Query 047314
Match_columns 173
No_of_seqs 129 out of 2559
Neff 9.7
Searched_HMMs 46136
Date Fri Mar 29 09:54:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047314.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/047314hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0617 Ras suppressor protein 99.6 2.5E-17 5.3E-22 114.6 -4.0 121 46-168 50-185 (264)
2 KOG4658 Apoptotic ATPase [Sign 99.5 8E-14 1.7E-18 119.6 6.7 163 2-165 462-677 (889)
3 PLN03210 Resistant to P. syrin 99.5 3.5E-13 7.7E-18 119.5 9.8 164 2-167 474-715 (1153)
4 PLN00113 leucine-rich repeat r 99.3 3.2E-12 7E-17 111.8 7.5 118 48-166 160-294 (968)
5 PLN00113 leucine-rich repeat r 99.3 8E-12 1.7E-16 109.4 8.3 118 50-168 138-272 (968)
6 KOG0617 Ras suppressor protein 99.3 2.7E-13 5.9E-18 94.5 -2.1 121 46-166 27-160 (264)
7 KOG4194 Membrane glycoprotein 99.2 4.3E-12 9.3E-17 102.6 0.8 122 46-169 263-405 (873)
8 PF14580 LRR_9: Leucine-rich r 99.1 1.9E-11 4.1E-16 86.5 2.5 121 49-171 16-155 (175)
9 KOG0444 Cytoskeletal regulator 99.1 1.4E-11 3E-16 100.7 -1.3 120 51-170 125-259 (1255)
10 KOG0444 Cytoskeletal regulator 99.0 1.5E-11 3.3E-16 100.5 -3.7 122 46-167 216-350 (1255)
11 KOG4194 Membrane glycoprotein 98.9 4E-10 8.6E-15 91.5 2.7 122 46-169 96-234 (873)
12 KOG0472 Leucine-rich repeat pr 98.9 1.1E-10 2.3E-15 91.0 -0.9 108 57-166 417-538 (565)
13 PLN03210 Resistant to P. syrin 98.9 4.8E-09 1E-13 93.6 8.2 116 51-169 777-906 (1153)
14 PF14580 LRR_9: Leucine-rich r 98.9 1.5E-09 3.3E-14 76.8 3.7 96 47-145 36-147 (175)
15 KOG0472 Leucine-rich repeat pr 98.8 2E-11 4.3E-16 95.0 -8.1 120 46-167 154-286 (565)
16 PF13855 LRR_8: Leucine rich r 98.8 8.9E-09 1.9E-13 60.3 4.8 59 52-110 1-61 (61)
17 KOG0618 Serine/threonine phosp 98.8 7.6E-10 1.6E-14 93.6 -1.4 100 46-145 377-483 (1081)
18 KOG0618 Serine/threonine phosp 98.7 2.5E-09 5.5E-14 90.5 0.3 69 46-114 258-326 (1081)
19 KOG0532 Leucine-rich repeat (L 98.7 1.5E-09 3.2E-14 87.8 -1.9 116 46-165 115-243 (722)
20 PRK15370 E3 ubiquitin-protein 98.6 7.8E-08 1.7E-12 82.1 5.6 38 53-92 221-258 (754)
21 KOG4658 Apoptotic ATPase [Sign 98.6 3.8E-08 8.3E-13 85.2 3.6 124 46-169 565-730 (889)
22 KOG0532 Leucine-rich repeat (L 98.6 1.3E-09 2.8E-14 88.1 -5.0 119 46-168 92-223 (722)
23 PLN03150 hypothetical protein; 98.6 1.7E-07 3.8E-12 78.8 6.8 92 53-145 419-522 (623)
24 PRK15387 E3 ubiquitin-protein 98.5 1.5E-07 3.2E-12 80.4 5.9 89 76-168 343-457 (788)
25 COG4886 Leucine-rich repeat (L 98.5 5.3E-08 1.1E-12 77.5 2.4 120 46-167 133-266 (394)
26 KOG1259 Nischarin, modulator o 98.5 1.4E-08 3.1E-13 76.9 -1.4 97 46-145 278-381 (490)
27 PRK15370 E3 ubiquitin-protein 98.5 6.8E-07 1.5E-11 76.4 8.0 106 52-166 199-314 (754)
28 cd00116 LRR_RI Leucine-rich re 98.5 3.2E-08 7E-13 76.1 -0.1 121 47-167 76-232 (319)
29 PF12799 LRR_4: Leucine Rich r 98.4 3.5E-07 7.7E-12 49.9 3.8 40 52-91 1-40 (44)
30 cd00116 LRR_RI Leucine-rich re 98.4 5.6E-08 1.2E-12 74.8 0.3 14 75-88 137-150 (319)
31 KOG1259 Nischarin, modulator o 98.4 7.4E-08 1.6E-12 73.1 0.1 99 46-145 301-406 (490)
32 COG4886 Leucine-rich repeat (L 98.3 1.9E-07 4.1E-12 74.3 2.0 121 46-168 110-244 (394)
33 PLN03150 hypothetical protein; 98.3 9.3E-07 2E-11 74.5 6.0 81 46-126 436-527 (623)
34 PRK15387 E3 ubiquitin-protein 98.3 2.1E-06 4.5E-11 73.5 7.2 83 53-145 223-309 (788)
35 PF13855 LRR_8: Leucine rich r 98.3 5.7E-07 1.2E-11 52.6 2.6 52 75-126 1-61 (61)
36 PF12799 LRR_4: Leucine Rich r 98.3 7.1E-07 1.5E-11 48.6 2.7 40 75-114 1-40 (44)
37 KOG4237 Extracellular matrix p 98.2 8.8E-08 1.9E-12 74.7 -3.3 98 46-145 60-171 (498)
38 KOG4237 Extracellular matrix p 98.2 1E-07 2.2E-12 74.4 -3.3 98 46-145 85-195 (498)
39 KOG1644 U2-associated snRNP A' 98.0 7.4E-06 1.6E-10 58.8 3.5 57 53-110 43-100 (233)
40 KOG1859 Leucine-rich repeat pr 98.0 9.2E-08 2E-12 79.8 -7.4 92 51-145 163-261 (1096)
41 KOG0531 Protein phosphatase 1, 97.8 3.1E-06 6.8E-11 68.0 -0.3 79 48-127 91-175 (414)
42 KOG1909 Ran GTPase-activating 97.8 9.9E-06 2.2E-10 62.4 1.6 125 46-170 86-255 (382)
43 KOG3207 Beta-tubulin folding c 97.7 5.4E-06 1.2E-10 65.7 -1.0 35 51-85 196-232 (505)
44 KOG3207 Beta-tubulin folding c 97.7 9.3E-06 2E-10 64.4 0.3 120 47-168 141-313 (505)
45 PRK15386 type III secretion pr 97.7 0.00015 3.2E-09 58.0 7.0 73 48-125 48-123 (426)
46 KOG0531 Protein phosphatase 1, 97.7 7.9E-06 1.7E-10 65.7 -0.5 118 50-169 70-199 (414)
47 KOG4579 Leucine-rich repeat (L 97.6 5E-06 1.1E-10 56.4 -2.4 63 52-114 53-116 (177)
48 KOG4579 Leucine-rich repeat (L 97.5 1.6E-05 3.5E-10 54.0 -0.4 74 54-127 29-113 (177)
49 KOG1644 U2-associated snRNP A' 97.4 0.00028 6.2E-09 50.8 4.8 113 55-171 22-155 (233)
50 KOG1859 Leucine-rich repeat pr 97.3 1.1E-05 2.4E-10 67.8 -4.0 98 46-145 181-286 (1096)
51 COG5238 RNA1 Ran GTPase-activa 97.2 0.0004 8.6E-09 52.5 3.6 124 46-169 86-255 (388)
52 KOG2120 SCF ubiquitin ligase, 97.2 8E-06 1.7E-10 62.1 -5.7 63 46-108 204-270 (419)
53 KOG3665 ZYG-1-like serine/thre 97.0 0.00058 1.3E-08 58.3 3.7 76 49-125 145-231 (699)
54 KOG2123 Uncharacterized conser 97.0 2.1E-05 4.5E-10 59.4 -4.9 77 50-128 17-102 (388)
55 KOG2982 Uncharacterized conser 96.9 0.00061 1.3E-08 52.1 2.4 63 46-108 91-156 (418)
56 PF00560 LRR_1: Leucine Rich R 96.9 0.00079 1.7E-08 30.8 1.7 21 53-73 1-21 (22)
57 KOG2739 Leucine-rich acidic nu 96.7 0.00059 1.3E-08 50.8 0.9 79 48-127 39-129 (260)
58 KOG1909 Ran GTPase-activating 96.6 0.00049 1.1E-08 53.3 -0.3 123 47-169 152-311 (382)
59 KOG2982 Uncharacterized conser 96.4 0.0012 2.7E-08 50.5 0.7 79 49-127 68-159 (418)
60 PRK15386 type III secretion pr 96.3 0.009 2E-07 48.0 5.2 58 71-133 48-112 (426)
61 KOG2123 Uncharacterized conser 96.1 0.00018 3.9E-09 54.5 -4.7 60 48-108 37-98 (388)
62 PF00560 LRR_1: Leucine Rich R 96.1 0.0027 5.9E-08 28.9 1.0 21 76-96 1-21 (22)
63 KOG2739 Leucine-rich acidic nu 96.0 0.0046 1E-07 46.2 2.2 69 46-114 59-132 (260)
64 KOG2120 SCF ubiquitin ligase, 95.9 0.00025 5.5E-09 54.1 -4.8 116 53-168 186-350 (419)
65 PF13504 LRR_7: Leucine rich r 95.4 0.012 2.6E-07 25.0 1.4 16 53-68 2-17 (17)
66 smart00370 LRR Leucine-rich re 94.0 0.049 1.1E-06 25.6 1.8 19 52-70 2-20 (26)
67 smart00369 LRR_TYP Leucine-ric 94.0 0.049 1.1E-06 25.6 1.8 19 52-70 2-20 (26)
68 PF13306 LRR_5: Leucine rich r 93.9 0.24 5.2E-06 32.6 5.8 76 47-124 7-91 (129)
69 COG5238 RNA1 Ran GTPase-activa 93.6 0.053 1.1E-06 41.4 2.2 78 50-127 28-133 (388)
70 PF13306 LRR_5: Leucine rich r 91.0 0.61 1.3E-05 30.6 4.7 61 46-108 29-91 (129)
71 PF13516 LRR_6: Leucine Rich r 87.2 0.19 4.1E-06 23.0 0.0 14 52-65 2-15 (24)
72 KOG0473 Leucine-rich repeat pr 86.6 0.011 2.3E-07 44.0 -6.6 67 48-114 38-104 (326)
73 smart00367 LRR_CC Leucine-rich 83.2 0.29 6.4E-06 22.9 -0.3 18 155-172 1-18 (26)
74 smart00364 LRR_BAC Leucine-ric 82.0 0.84 1.8E-05 21.6 1.0 17 53-69 3-19 (26)
75 smart00365 LRR_SD22 Leucine-ri 78.6 1.7 3.7E-05 20.5 1.5 16 98-113 2-17 (26)
76 KOG1947 Leucine rich repeat pr 76.9 0.22 4.8E-06 40.3 -3.2 34 51-84 187-223 (482)
77 KOG0473 Leucine-rich repeat pr 74.0 0.1 2.2E-06 39.0 -5.2 64 46-109 59-122 (326)
78 KOG3864 Uncharacterized conser 72.2 0.36 7.8E-06 35.1 -2.6 79 66-145 92-183 (221)
79 KOG3864 Uncharacterized conser 68.3 0.91 2E-05 33.1 -1.3 70 54-123 103-185 (221)
80 smart00368 LRR_RI Leucine rich 67.7 3.9 8.5E-05 19.4 1.3 14 52-65 2-15 (28)
81 KOG4341 F-box protein containi 66.7 1.2 2.6E-05 36.0 -1.0 74 97-170 293-386 (483)
82 KOG1947 Leucine rich repeat pr 62.8 1.7 3.7E-05 35.1 -0.9 96 74-169 187-308 (482)
83 KOG4341 F-box protein containi 58.8 4 8.7E-05 33.2 0.6 62 47-108 289-356 (483)
84 KOG3763 mRNA export factor TAP 47.7 7.9 0.00017 32.6 0.6 72 73-145 216-308 (585)
85 PF05725 FNIP: FNIP Repeat; I 27.5 1E+02 0.0022 16.1 3.1 7 115-121 35-41 (44)
86 TIGR00864 PCC polycystin catio 23.2 54 0.0012 33.3 1.9 30 59-88 2-32 (2740)
No 1
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.59 E-value=2.5e-17 Score=114.57 Aligned_cols=121 Identities=26% Similarity=0.336 Sum_probs=111.5
Q ss_pred ccccCCCcccEEEecCcccccchhhhCCCCCCcEEeccCCcccccCccccCCCCccEEEecCCCC--CCCC-------cc
Q 047314 46 FLAKECRLLQVLDLEGVYMALLDSSVGNLIHLRYLDLRKTWLKKLPSSMGNLFNLQSLDLSSTLV--DPIP-------LL 116 (173)
Q Consensus 46 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~l~~L~~l~l~~~~~~~~p~~l~~l~~L~~L~l~~~~~--~~lp-------~L 116 (173)
|.++++.+|++|++.+|+++++|.+++++++|+.|+++.|++..+|..|+.++.|+.|++++|++ ..+| .|
T Consensus 50 pnia~l~nlevln~~nnqie~lp~~issl~klr~lnvgmnrl~~lprgfgs~p~levldltynnl~e~~lpgnff~m~tl 129 (264)
T KOG0617|consen 50 PNIAELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMNRLNILPRGFGSFPALEVLDLTYNNLNENSLPGNFFYMTTL 129 (264)
T ss_pred CcHHHhhhhhhhhcccchhhhcChhhhhchhhhheecchhhhhcCccccCCCchhhhhhccccccccccCCcchhHHHHH
Confidence 77999999999999999999999999999999999999999999999999999999999999965 4466 78
Q ss_pred eEEEeeceeccccCCCCC-CCccccceeec-----cccccccCCCCCcCEEEEeceee
Q 047314 117 KHVCFNEFREMVVNPPVE-ASLPNLQKLIG-----TEMVCSSGRFSHLQFLKLSNIRV 168 (173)
Q Consensus 117 ~~L~l~~n~~~~~~lp~~-~~l~~L~~L~l-----~~~~~~l~~l~~L~~L~l~~~~~ 168 (173)
+.|+++.|.+. -+|.. +.+++|+.|.+ -++|.+++.+.+|++|.+.+.+-
T Consensus 130 ralyl~dndfe--~lp~dvg~lt~lqil~lrdndll~lpkeig~lt~lrelhiqgnrl 185 (264)
T KOG0617|consen 130 RALYLGDNDFE--ILPPDVGKLTNLQILSLRDNDLLSLPKEIGDLTRLRELHIQGNRL 185 (264)
T ss_pred HHHHhcCCCcc--cCChhhhhhcceeEEeeccCchhhCcHHHHHHHHHHHHhccccee
Confidence 99999999998 88988 99999999998 56899999999999999887653
No 2
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.47 E-value=8e-14 Score=119.64 Aligned_cols=163 Identities=28% Similarity=0.306 Sum_probs=118.3
Q ss_pred cccccCCccc-c-----ceeEeCHHHHHHHHHhcc-----ccceEeecCCCCc-c---------C------------ccc
Q 047314 2 ELIERSMVQP-I-----KTIQVHDLLRELAISKAK-----EDRFLDIIHEDSN-A---------R------------FLA 48 (173)
Q Consensus 2 ~l~~r~l~~~-~-----~~~~~h~~~~~~~~~~~~-----~~~~~~~~~~~~~-~---------r------------~~~ 48 (173)
+||.|+|++. . .+|+|||+++++|.++++ +++.+...+.... . | +.-
T Consensus 462 ~LV~~~Ll~~~~~~~~~~~~kmHDvvRe~al~ias~~~~~~e~~iv~~~~~~~~~~~~~~~~~~rr~s~~~~~~~~~~~~ 541 (889)
T KOG4658|consen 462 ELVRASLLIEERDEGRKETVKMHDVVREMALWIASDFGKQEENQIVSDGVGLSEIPQVKSWNSVRRMSLMNNKIEHIAGS 541 (889)
T ss_pred HHHHHHHHhhcccccceeEEEeeHHHHHHHHHHhccccccccceEEECCcCccccccccchhheeEEEEeccchhhccCC
Confidence 6889999988 2 899999999999999999 6665555431111 1 1 333
Q ss_pred cCCCcccEEEecCcc--cccchhh-hCCCCCCcEEeccCCc-ccccCccccCCCCccEEEecCCCCCCCC-------cce
Q 047314 49 KECRLLQVLDLEGVY--MALLDSS-VGNLIHLRYLDLRKTW-LKKLPSSMGNLFNLQSLDLSSTLVDPIP-------LLK 117 (173)
Q Consensus 49 ~~l~~L~~L~l~~n~--l~~~~~~-~~~l~~L~~l~l~~~~-~~~~p~~l~~l~~L~~L~l~~~~~~~lp-------~L~ 117 (173)
...++|++|-+.+|. +..++.. |..++.|+.||+++|. +..+|..++.+-+|++|+++++.+..+| .|.
T Consensus 542 ~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~~LP~~l~~Lk~L~ 621 (889)
T KOG4658|consen 542 SENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGISHLPSGLGNLKKLI 621 (889)
T ss_pred CCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCccccchHHHHHHhhh
Confidence 445578888888886 4555444 6678999999998765 5689999999999999999999998888 788
Q ss_pred EEEeeceeccccCCCCC-CCccccceeec--------cccccccCCCCCcCEEEEec
Q 047314 118 HVCFNEFREMVVNPPVE-ASLPNLQKLIG--------TEMVCSSGRFSHLQFLKLSN 165 (173)
Q Consensus 118 ~L~l~~n~~~~~~lp~~-~~l~~L~~L~l--------~~~~~~l~~l~~L~~L~l~~ 165 (173)
+|++..+.... .+|.. ..+.+|++|.+ .....++..+++|+.+.+..
T Consensus 622 ~Lnl~~~~~l~-~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~ 677 (889)
T KOG4658|consen 622 YLNLEVTGRLE-SIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSITI 677 (889)
T ss_pred eeccccccccc-cccchhhhcccccEEEeeccccccchhhHHhhhcccchhhheeec
Confidence 88888776553 44455 67889999888 22333455566666555543
No 3
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.45 E-value=3.5e-13 Score=119.50 Aligned_cols=164 Identities=21% Similarity=0.270 Sum_probs=98.0
Q ss_pred cccccCCccc-cceeEeCHHHHHHHHHhccccc-------eEeec-------CCCCcc-------------------Ccc
Q 047314 2 ELIERSMVQP-IKTIQVHDLLRELAISKAKEDR-------FLDII-------HEDSNA-------------------RFL 47 (173)
Q Consensus 2 ~l~~r~l~~~-~~~~~~h~~~~~~~~~~~~~~~-------~~~~~-------~~~~~~-------------------r~~ 47 (173)
.|+++|||+. ..++.|||++++||.++++++. +.... .....+ +.+
T Consensus 474 ~L~~ksLi~~~~~~~~MHdLl~~~~r~i~~~~~~~~~~r~~l~~~~di~~vl~~~~g~~~v~~i~l~~~~~~~~~i~~~a 553 (1153)
T PLN03210 474 NLVDKSLIHVREDIVEMHSLLQEMGKEIVRAQSNEPGEREFLVDAKDICDVLEDNTGTKKVLGITLDIDEIDELHIHENA 553 (1153)
T ss_pred HHHhcCCEEEcCCeEEhhhHHHHHHHHHHHhhcCCCCcceeEeCHHHHHHHHHhCcccceeeEEEeccCccceeeecHHH
Confidence 6899999988 7889999999999999986542 11110 000000 145
Q ss_pred ccCCCcccEEEecCcc------cc-cchhhhCC-----------------------CCCCcEEeccCCcccccCccccCC
Q 047314 48 AKECRLLQVLDLEGVY------MA-LLDSSVGN-----------------------LIHLRYLDLRKTWLKKLPSSMGNL 97 (173)
Q Consensus 48 ~~~l~~L~~L~l~~n~------l~-~~~~~~~~-----------------------l~~L~~l~l~~~~~~~~p~~l~~l 97 (173)
|.+|++|+.|.+..+. +. .+|+.+.. ..+|+.|+++++.+..++..+..+
T Consensus 554 F~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~~lP~~f~~~~L~~L~L~~s~l~~L~~~~~~l 633 (1153)
T PLN03210 554 FKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLRCMPSNFRPENLVKLQMQGSKLEKLWDGVHSL 633 (1153)
T ss_pred HhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCCCCCCcCCccCCcEEECcCccccccccccccC
Confidence 7777777777765432 11 23333333 345555555555555555555666
Q ss_pred CCccEEEecCC-CCCCCC------cceEEEeeceeccccCCCCC-CCccccceeec------cccccccCCCCCcCEEEE
Q 047314 98 FNLQSLDLSST-LVDPIP------LLKHVCFNEFREMVVNPPVE-ASLPNLQKLIG------TEMVCSSGRFSHLQFLKL 163 (173)
Q Consensus 98 ~~L~~L~l~~~-~~~~lp------~L~~L~l~~n~~~~~~lp~~-~~l~~L~~L~l------~~~~~~l~~l~~L~~L~l 163 (173)
++|+.++++++ .++.+| +|+.|++.+|.... .+|.. +.+++|+.|++ +.+|..+ ++++|+.|++
T Consensus 634 ~~Lk~L~Ls~~~~l~~ip~ls~l~~Le~L~L~~c~~L~-~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~sL~~L~L 711 (1153)
T PLN03210 634 TGLRNIDLRGSKNLKEIPDLSMATNLETLKLSDCSSLV-ELPSSIQYLNKLEDLDMSRCENLEILPTGI-NLKSLYRLNL 711 (1153)
T ss_pred CCCCEEECCCCCCcCcCCccccCCcccEEEecCCCCcc-ccchhhhccCCCCEEeCCCCCCcCccCCcC-CCCCCCEEeC
Confidence 66666666655 244443 56666666654333 56666 66667777666 3344443 5667777777
Q ss_pred ecee
Q 047314 164 SNIR 167 (173)
Q Consensus 164 ~~~~ 167 (173)
++|.
T Consensus 712 sgc~ 715 (1153)
T PLN03210 712 SGCS 715 (1153)
T ss_pred CCCC
Confidence 6664
No 4
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.32 E-value=3.2e-12 Score=111.83 Aligned_cols=118 Identities=27% Similarity=0.293 Sum_probs=49.5
Q ss_pred ccCCCcccEEEecCcccc-cchhhhCCCCCCcEEeccCCccc-ccCccccCCCCccEEEecCCCCC-CCC-------cce
Q 047314 48 AKECRLLQVLDLEGVYMA-LLDSSVGNLIHLRYLDLRKTWLK-KLPSSMGNLFNLQSLDLSSTLVD-PIP-------LLK 117 (173)
Q Consensus 48 ~~~l~~L~~L~l~~n~l~-~~~~~~~~l~~L~~l~l~~~~~~-~~p~~l~~l~~L~~L~l~~~~~~-~lp-------~L~ 117 (173)
++.+++|++|++++|.+. .+|..+.++++|++|++++|.+. .+|..++.+++|+.|++++|.+. .+| +|+
T Consensus 160 ~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~ 239 (968)
T PLN00113 160 IGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLN 239 (968)
T ss_pred HhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCC
Confidence 334444444444444443 34444444444444444444433 33444444444444444444322 122 444
Q ss_pred EEEeeceeccccCCCCC-CCccccceeec------cccccccCCCCCcCEEEEece
Q 047314 118 HVCFNEFREMVVNPPVE-ASLPNLQKLIG------TEMVCSSGRFSHLQFLKLSNI 166 (173)
Q Consensus 118 ~L~l~~n~~~~~~lp~~-~~l~~L~~L~l------~~~~~~l~~l~~L~~L~l~~~ 166 (173)
+|++++|.+.+ .+|.. +++++|+.|++ +..|..+.++++|+.|+++++
T Consensus 240 ~L~L~~n~l~~-~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n 294 (968)
T PLN00113 240 HLDLVYNNLTG-PIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDN 294 (968)
T ss_pred EEECcCceecc-ccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCC
Confidence 44444444443 33333 44444444444 223333444444444444433
No 5
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.30 E-value=8e-12 Score=109.36 Aligned_cols=118 Identities=29% Similarity=0.368 Sum_probs=84.3
Q ss_pred CCCcccEEEecCcccc-cchhhhCCCCCCcEEeccCCccc-ccCccccCCCCccEEEecCCCCC-CCC-------cceEE
Q 047314 50 ECRLLQVLDLEGVYMA-LLDSSVGNLIHLRYLDLRKTWLK-KLPSSMGNLFNLQSLDLSSTLVD-PIP-------LLKHV 119 (173)
Q Consensus 50 ~l~~L~~L~l~~n~l~-~~~~~~~~l~~L~~l~l~~~~~~-~~p~~l~~l~~L~~L~l~~~~~~-~lp-------~L~~L 119 (173)
.+++|++|++++|.++ ..|..++++++|+.|++++|.+. .+|..++.+++|++|++++|.+. .+| +|+.|
T Consensus 138 ~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L 217 (968)
T PLN00113 138 SIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWI 217 (968)
T ss_pred ccCCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEE
Confidence 4556666666666665 56667777777888888777765 66777777778888888777543 233 67788
Q ss_pred EeeceeccccCCCCC-CCccccceeec------cccccccCCCCCcCEEEEeceee
Q 047314 120 CFNEFREMVVNPPVE-ASLPNLQKLIG------TEMVCSSGRFSHLQFLKLSNIRV 168 (173)
Q Consensus 120 ~l~~n~~~~~~lp~~-~~l~~L~~L~l------~~~~~~l~~l~~L~~L~l~~~~~ 168 (173)
++++|.+.+ .+|.. +.+++|++|++ +..|..++++++|+.|+++++..
T Consensus 218 ~L~~n~l~~-~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l 272 (968)
T PLN00113 218 YLGYNNLSG-EIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKL 272 (968)
T ss_pred ECcCCccCC-cCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCee
Confidence 888887775 66766 77788888877 45677778888888888877653
No 6
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.26 E-value=2.7e-13 Score=94.53 Aligned_cols=121 Identities=18% Similarity=0.219 Sum_probs=104.1
Q ss_pred ccccCCCcccEEEecCcccccchhhhCCCCCCcEEeccCCcccccCccccCCCCccEEEecCCCC-------CCCCcceE
Q 047314 46 FLAKECRLLQVLDLEGVYMALLDSSVGNLIHLRYLDLRKTWLKKLPSSMGNLFNLQSLDLSSTLV-------DPIPLLKH 118 (173)
Q Consensus 46 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~l~~L~~l~l~~~~~~~~p~~l~~l~~L~~L~l~~~~~-------~~lp~L~~ 118 (173)
+.+-.+.+++.|.++.|.++.+|+.+..+.+|+.|++++|+++++|.+++.+++|+.|+++-|.+ +.+|.|+.
T Consensus 27 ~gLf~~s~ITrLtLSHNKl~~vppnia~l~nlevln~~nnqie~lp~~issl~klr~lnvgmnrl~~lprgfgs~p~lev 106 (264)
T KOG0617|consen 27 PGLFNMSNITRLTLSHNKLTVVPPNIAELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMNRLNILPRGFGSFPALEV 106 (264)
T ss_pred ccccchhhhhhhhcccCceeecCCcHHHhhhhhhhhcccchhhhcChhhhhchhhhheecchhhhhcCccccCCCchhhh
Confidence 44667788899999999999999999999999999999999999999999999999999998854 44558999
Q ss_pred EEeeceeccccCCCCC-CCccccceeec-----cccccccCCCCCcCEEEEece
Q 047314 119 VCFNEFREMVVNPPVE-ASLPNLQKLIG-----TEMVCSSGRFSHLQFLKLSNI 166 (173)
Q Consensus 119 L~l~~n~~~~~~lp~~-~~l~~L~~L~l-----~~~~~~l~~l~~L~~L~l~~~ 166 (173)
|++.+|.+....+|.. -.+..|+-|.+ .-+|..++++++||.|.+++.
T Consensus 107 ldltynnl~e~~lpgnff~m~tlralyl~dndfe~lp~dvg~lt~lqil~lrdn 160 (264)
T KOG0617|consen 107 LDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFEILPPDVGKLTNLQILSLRDN 160 (264)
T ss_pred hhccccccccccCCcchhHHHHHHHHHhcCCCcccCChhhhhhcceeEEeeccC
Confidence 9999999987677765 55666666666 567999999999999988764
No 7
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.18 E-value=4.3e-12 Score=102.61 Aligned_cols=122 Identities=19% Similarity=0.142 Sum_probs=96.0
Q ss_pred ccccCCCcccEEEecCcccccchh-hhCCCCCCcEEeccCCccc-ccCccccCCCCccEEEecCCCCCCCC--------c
Q 047314 46 FLAKECRLLQVLDLEGVYMALLDS-SVGNLIHLRYLDLRKTWLK-KLPSSMGNLFNLQSLDLSSTLVDPIP--------L 115 (173)
Q Consensus 46 ~~~~~l~~L~~L~l~~n~l~~~~~-~~~~l~~L~~l~l~~~~~~-~~p~~l~~l~~L~~L~l~~~~~~~lp--------~ 115 (173)
..|..|.+++.|++..|+++.+.+ ++.+++.|+.|+++.|.|. ..++++..+++|..|++++|.+.+++ .
T Consensus 263 G~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~ 342 (873)
T KOG4194|consen 263 GAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQ 342 (873)
T ss_pred cceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecchhhhcccceeEeccccccccCChhHHHHHHH
Confidence 688999999999999999995544 5789999999999999999 44788999999999999999999988 6
Q ss_pred ceEEEeeceeccccCCCCC--CCccccceeec---------cccccccCCCCCcCEEEEeceeee
Q 047314 116 LKHVCFNEFREMVVNPPVE--ASLPNLQKLIG---------TEMVCSSGRFSHLQFLKLSNIRVE 169 (173)
Q Consensus 116 L~~L~l~~n~~~~~~lp~~--~~l~~L~~L~l---------~~~~~~l~~l~~L~~L~l~~~~~~ 169 (173)
|+.|+++.|++. .+... ..+++|+.|++ +.-...+..++.|++|++.+...+
T Consensus 343 Le~LnLs~Nsi~--~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk 405 (873)
T KOG4194|consen 343 LEELNLSHNSID--HLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLK 405 (873)
T ss_pred hhhhcccccchH--HHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCceee
Confidence 778888888777 66554 67777777777 122223566777777776665443
No 8
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.15 E-value=1.9e-11 Score=86.52 Aligned_cols=121 Identities=26% Similarity=0.346 Sum_probs=37.6
Q ss_pred cCCCcccEEEecCcccccchhhhC-CCCCCcEEeccCCcccccCccccCCCCccEEEecCCCCCCC--------CcceEE
Q 047314 49 KECRLLQVLDLEGVYMALLDSSVG-NLIHLRYLDLRKTWLKKLPSSMGNLFNLQSLDLSSTLVDPI--------PLLKHV 119 (173)
Q Consensus 49 ~~l~~L~~L~l~~n~l~~~~~~~~-~l~~L~~l~l~~~~~~~~p~~l~~l~~L~~L~l~~~~~~~l--------p~L~~L 119 (173)
.+..+++.|++.+|.|+.+ +.++ .+.+|+.|++++|.++.++ .+..++.|++|++++|.+..+ |+|+.|
T Consensus 16 ~n~~~~~~L~L~~n~I~~I-e~L~~~l~~L~~L~Ls~N~I~~l~-~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~L 93 (175)
T PF14580_consen 16 NNPVKLRELNLRGNQISTI-ENLGATLDKLEVLDLSNNQITKLE-GLPGLPRLKTLDLSNNRISSISEGLDKNLPNLQEL 93 (175)
T ss_dssp ---------------------S--TT-TT--EEE-TTS--S--T-T----TT--EEE--SS---S-CHHHHHH-TT--EE
T ss_pred ccccccccccccccccccc-cchhhhhcCCCEEECCCCCCcccc-CccChhhhhhcccCCCCCCccccchHHhCCcCCEE
Confidence 3444567777777777644 2344 4566777777777777664 466677777777777765544 267777
Q ss_pred EeeceeccccCCCCC-CCccccceeec---------cccccccCCCCCcCEEEEeceeeecc
Q 047314 120 CFNEFREMVVNPPVE-ASLPNLQKLIG---------TEMVCSSGRFSHLQFLKLSNIRVEER 171 (173)
Q Consensus 120 ~l~~n~~~~~~lp~~-~~l~~L~~L~l---------~~~~~~l~~l~~L~~L~l~~~~~~~~ 171 (173)
++++|.+..+.-... ..+++|+.|++ .-....+..+|+|+.||-..+...++
T Consensus 94 ~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~~~V~~~ER 155 (175)
T PF14580_consen 94 YLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDGQDVTEEER 155 (175)
T ss_dssp E-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETTEETTS-B-
T ss_pred ECcCCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCCEEccHHHh
Confidence 777777762222223 66777777777 11122356677777777666555443
No 9
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.06 E-value=1.4e-11 Score=100.71 Aligned_cols=120 Identities=26% Similarity=0.309 Sum_probs=76.5
Q ss_pred CCcccEEEecCcccccchhhh-CCCCCCcEEeccCCcccccCccccCCCCccEEEecCCC-----CCCCC---cceEEEe
Q 047314 51 CRLLQVLDLEGVYMALLDSSV-GNLIHLRYLDLRKTWLKKLPSSMGNLFNLQSLDLSSTL-----VDPIP---LLKHVCF 121 (173)
Q Consensus 51 l~~L~~L~l~~n~l~~~~~~~-~~l~~L~~l~l~~~~~~~~p~~l~~l~~L~~L~l~~~~-----~~~lp---~L~~L~l 121 (173)
.+++-+|++++|+|..+|.++ -+++-|-+|+++.|++..+|+.+..+..|++|.+++|. ++.+| +|+.|.+
T Consensus 125 AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~NrLe~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhm 204 (1255)
T KOG0444|consen 125 AKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNRLEMLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHM 204 (1255)
T ss_pred hcCcEEEEcccCccccCCchHHHhhHhHhhhccccchhhhcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhc
Confidence 334444555555555555543 24555555555555555666666666666666666662 34455 6666777
Q ss_pred eceeccccCCCCC-CCccccceeec-----cccccccCCCCCcCEEEEeceeeec
Q 047314 122 NEFREMVVNPPVE-ASLPNLQKLIG-----TEMVCSSGRFSHLQFLKLSNIRVEE 170 (173)
Q Consensus 122 ~~n~~~~~~lp~~-~~l~~L~~L~l-----~~~~~~l~~l~~L~~L~l~~~~~~~ 170 (173)
+++.-+...+|.. ..+.+|..+|+ ..+|..+..+++|+.|++++....+
T Consensus 205 s~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp~vPecly~l~~LrrLNLS~N~ite 259 (1255)
T KOG0444|consen 205 SNTQRTLDNIPTSLDDLHNLRDVDLSENNLPIVPECLYKLRNLRRLNLSGNKITE 259 (1255)
T ss_pred ccccchhhcCCCchhhhhhhhhccccccCCCcchHHHhhhhhhheeccCcCceee
Confidence 7666555567777 77788888887 4567778899999999998876543
No 10
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=98.99 E-value=1.5e-11 Score=100.50 Aligned_cols=122 Identities=23% Similarity=0.242 Sum_probs=71.0
Q ss_pred ccccCCCcccEEEecCcccccchhhhCCCCCCcEEeccCCcccccCccccCCCCccEEEecCCCCCCCC-------cceE
Q 047314 46 FLAKECRLLQVLDLEGVYMALLDSSVGNLIHLRYLDLRKTWLKKLPSSMGNLFNLQSLDLSSTLVDPIP-------LLKH 118 (173)
Q Consensus 46 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~l~~L~~l~l~~~~~~~~p~~l~~l~~L~~L~l~~~~~~~lp-------~L~~ 118 (173)
+.+..+.+|+.++++.|+++.+|..+.++.+|+.|++++|.++++.-..+...+|++|+++.|++..+| .|+.
T Consensus 216 tsld~l~NL~dvDlS~N~Lp~vPecly~l~~LrrLNLS~N~iteL~~~~~~W~~lEtLNlSrNQLt~LP~avcKL~kL~k 295 (1255)
T KOG0444|consen 216 TSLDDLHNLRDVDLSENNLPIVPECLYKLRNLRRLNLSGNKITELNMTEGEWENLETLNLSRNQLTVLPDAVCKLTKLTK 295 (1255)
T ss_pred CchhhhhhhhhccccccCCCcchHHHhhhhhhheeccCcCceeeeeccHHHHhhhhhhccccchhccchHHHhhhHHHHH
Confidence 445555566666666666666666666666666666666666655555555556666666666665555 4555
Q ss_pred EEeeceeccccCCCCC-CCccccceeec-----cccccccCCCCCcCEEEEecee
Q 047314 119 VCFNEFREMVVNPPVE-ASLPNLQKLIG-----TEMVCSSGRFSHLQFLKLSNIR 167 (173)
Q Consensus 119 L~l~~n~~~~~~lp~~-~~l~~L~~L~l-----~~~~~~l~~l~~L~~L~l~~~~ 167 (173)
|++.+|.+.=+-+|.+ |.+.+|+.++. .-+|..+..|..|++|.+++.+
T Consensus 296 Ly~n~NkL~FeGiPSGIGKL~~Levf~aanN~LElVPEglcRC~kL~kL~L~~Nr 350 (1255)
T KOG0444|consen 296 LYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLELVPEGLCRCVKLQKLKLDHNR 350 (1255)
T ss_pred HHhccCcccccCCccchhhhhhhHHHHhhccccccCchhhhhhHHHHHhcccccc
Confidence 5566655543345555 66655555554 3345556666666666555443
No 11
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=98.94 E-value=4e-10 Score=91.48 Aligned_cols=122 Identities=26% Similarity=0.260 Sum_probs=82.7
Q ss_pred ccccCCCcccEEEecCcccccchhhhCCCCCCcEEeccCCccccc-CccccCCCCccEEEecCCCCCCCC--------cc
Q 047314 46 FLAKECRLLQVLDLEGVYMALLDSSVGNLIHLRYLDLRKTWLKKL-PSSMGNLFNLQSLDLSSTLVDPIP--------LL 116 (173)
Q Consensus 46 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~l~~L~~l~l~~~~~~~~-p~~l~~l~~L~~L~l~~~~~~~lp--------~L 116 (173)
..|.++++|+.+++.+|.++.+|.......++..|++..|.|..+ ...+..++.|+.+|++.|.+..+| ++
T Consensus 96 ~~f~nl~nLq~v~l~~N~Lt~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrslDLSrN~is~i~~~sfp~~~ni 175 (873)
T KOG4194|consen 96 EFFYNLPNLQEVNLNKNELTRIPRFGHESGHLEKLDLRHNLISSVTSEELSALPALRSLDLSRNLISEIPKPSFPAKVNI 175 (873)
T ss_pred HHHhcCCcceeeeeccchhhhcccccccccceeEEeeeccccccccHHHHHhHhhhhhhhhhhchhhcccCCCCCCCCCc
Confidence 456777788888888887777777666666677777777777744 456677777788888887666655 67
Q ss_pred eEEEeeceeccccCCCCC--CCccccceeec-----ccccc-ccCCCCCcCEEEEeceeee
Q 047314 117 KHVCFNEFREMVVNPPVE--ASLPNLQKLIG-----TEMVC-SSGRFSHLQFLKLSNIRVE 169 (173)
Q Consensus 117 ~~L~l~~n~~~~~~lp~~--~~l~~L~~L~l-----~~~~~-~l~~l~~L~~L~l~~~~~~ 169 (173)
++|++++|+++ ++-.. ..+.+|-.|.+ ..+|. .++++++|+.|++...+..
T Consensus 176 ~~L~La~N~It--~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~ir 234 (873)
T KOG4194|consen 176 KKLNLASNRIT--TLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIR 234 (873)
T ss_pred eEEeecccccc--ccccccccccchheeeecccCcccccCHHHhhhcchhhhhhcccccee
Confidence 77888877777 55433 55566666666 33443 3666777777776655443
No 12
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=98.93 E-value=1.1e-10 Score=90.99 Aligned_cols=108 Identities=25% Similarity=0.335 Sum_probs=82.5
Q ss_pred EEecCcccccchhhhCCCCCCcEEeccCCcccccCccccCCCCccEEEecCCCCCCCC-------cceEEEeeceecccc
Q 047314 57 LDLEGVYMALLDSSVGNLIHLRYLDLRKTWLKKLPSSMGNLFNLQSLDLSSTLVDPIP-------LLKHVCFNEFREMVV 129 (173)
Q Consensus 57 L~l~~n~l~~~~~~~~~l~~L~~l~l~~~~~~~~p~~l~~l~~L~~L~l~~~~~~~lp-------~L~~L~l~~n~~~~~ 129 (173)
+.++.|.+..+|..++.+++|..|++++|.+..+|..++.+..|+.++++.|+++.+| .++.+-.+.|.+.
T Consensus 417 l~lsnn~isfv~~~l~~l~kLt~L~L~NN~Ln~LP~e~~~lv~Lq~LnlS~NrFr~lP~~~y~lq~lEtllas~nqi~-- 494 (565)
T KOG0472|consen 417 LVLSNNKISFVPLELSQLQKLTFLDLSNNLLNDLPEEMGSLVRLQTLNLSFNRFRMLPECLYELQTLETLLASNNQIG-- 494 (565)
T ss_pred HHhhcCccccchHHHHhhhcceeeecccchhhhcchhhhhhhhhheecccccccccchHHHhhHHHHHHHHhcccccc--
Confidence 4455555555566677778888888888888888888888888888888888888777 4455555567777
Q ss_pred CCCC-C-CCccccceeec-----cccccccCCCCCcCEEEEece
Q 047314 130 NPPV-E-ASLPNLQKLIG-----TEMVCSSGRFSHLQFLKLSNI 166 (173)
Q Consensus 130 ~lp~-~-~~l~~L~~L~l-----~~~~~~l~~l~~L~~L~l~~~ 166 (173)
.++. . .+|.+|..||+ ..+|..++++.+|++|++++.
T Consensus 495 ~vd~~~l~nm~nL~tLDL~nNdlq~IPp~LgnmtnL~hLeL~gN 538 (565)
T KOG0472|consen 495 SVDPSGLKNMRNLTTLDLQNNDLQQIPPILGNMTNLRHLELDGN 538 (565)
T ss_pred ccChHHhhhhhhcceeccCCCchhhCChhhccccceeEEEecCC
Confidence 5554 4 88889999988 678999999999999998874
No 13
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=98.90 E-value=4.8e-09 Score=93.59 Aligned_cols=116 Identities=25% Similarity=0.282 Sum_probs=98.6
Q ss_pred CCcccEEEecCcccc-cchhhhCCCCCCcEEeccCCc-ccccCccccCCCCccEEEecCC-CCCCCC----cceEEEeec
Q 047314 51 CRLLQVLDLEGVYMA-LLDSSVGNLIHLRYLDLRKTW-LKKLPSSMGNLFNLQSLDLSST-LVDPIP----LLKHVCFNE 123 (173)
Q Consensus 51 l~~L~~L~l~~n~l~-~~~~~~~~l~~L~~l~l~~~~-~~~~p~~l~~l~~L~~L~l~~~-~~~~lp----~L~~L~l~~ 123 (173)
.++|+.|++++|... .+|.+++++++|+.|++++|. +..+|..+ .+++|+.|++++| .+..+| +|+.|++++
T Consensus 777 ~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p~~~~nL~~L~Ls~ 855 (1153)
T PLN03210 777 SPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRTFPDISTNISDLNLSR 855 (1153)
T ss_pred cccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCccccccccccccCEeECCC
Confidence 467889999998644 899999999999999998864 66888766 7899999999998 466665 899999999
Q ss_pred eeccccCCCCC-CCccccceeec------cccccccCCCCCcCEEEEeceeee
Q 047314 124 FREMVVNPPVE-ASLPNLQKLIG------TEMVCSSGRFSHLQFLKLSNIRVE 169 (173)
Q Consensus 124 n~~~~~~lp~~-~~l~~L~~L~l------~~~~~~l~~l~~L~~L~l~~~~~~ 169 (173)
|.+. .+|.. +.+++|+.|++ ..+|..+..+++|+.+++++|...
T Consensus 856 n~i~--~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~~L 906 (1153)
T PLN03210 856 TGIE--EVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCGAL 906 (1153)
T ss_pred CCCc--cChHHHhcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCCccc
Confidence 9998 88988 99999999988 467777889999999999988643
No 14
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.89 E-value=1.5e-09 Score=76.83 Aligned_cols=96 Identities=26% Similarity=0.307 Sum_probs=49.3
Q ss_pred ccc-CCCcccEEEecCcccccchhhhCCCCCCcEEeccCCcccccCccc-cCCCCccEEEecCCCCCCCC---------c
Q 047314 47 LAK-ECRLLQVLDLEGVYMALLDSSVGNLIHLRYLDLRKTWLKKLPSSM-GNLFNLQSLDLSSTLVDPIP---------L 115 (173)
Q Consensus 47 ~~~-~l~~L~~L~l~~n~l~~~~~~~~~l~~L~~l~l~~~~~~~~p~~l-~~l~~L~~L~l~~~~~~~lp---------~ 115 (173)
.++ .+.+|+.|++++|.++.+. .+..++.|+.|++++|.++.++..+ ..+++|+.|.+++|.+..+. +
T Consensus 36 ~L~~~l~~L~~L~Ls~N~I~~l~-~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~L~L~~N~I~~l~~l~~L~~l~~ 114 (175)
T PF14580_consen 36 NLGATLDKLEVLDLSNNQITKLE-GLPGLPRLKTLDLSNNRISSISEGLDKNLPNLQELYLSNNKISDLNELEPLSSLPK 114 (175)
T ss_dssp S--TT-TT--EEE-TTS--S--T-T----TT--EEE--SS---S-CHHHHHH-TT--EEE-TTS---SCCCCGGGGG-TT
T ss_pred chhhhhcCCCEEECCCCCCcccc-CccChhhhhhcccCCCCCCccccchHHhCCcCCEEECcCCcCCChHHhHHHHcCCC
Confidence 344 5789999999999999764 5788999999999999999887666 46899999999999775543 8
Q ss_pred ceEEEeeceeccccCCCC----C-CCccccceeec
Q 047314 116 LKHVCFNEFREMVVNPPV----E-ASLPNLQKLIG 145 (173)
Q Consensus 116 L~~L~l~~n~~~~~~lp~----~-~~l~~L~~L~l 145 (173)
|+.|++.+|++. ..+. . ..+|+|+.||.
T Consensus 115 L~~L~L~~NPv~--~~~~YR~~vi~~lP~Lk~LD~ 147 (175)
T PF14580_consen 115 LRVLSLEGNPVC--EKKNYRLFVIYKLPSLKVLDG 147 (175)
T ss_dssp --EEE-TT-GGG--GSTTHHHHHHHH-TT-SEETT
T ss_pred cceeeccCCccc--chhhHHHHHHHHcChhheeCC
Confidence 999999999998 4443 1 67899999997
No 15
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=98.83 E-value=2e-11 Score=94.98 Aligned_cols=120 Identities=28% Similarity=0.254 Sum_probs=93.1
Q ss_pred ccccCCCcccEEEecCcccccchhhhCCCCCCcEEeccCCcccccCccccCCCCccEEEecCCCCCCCC------cceEE
Q 047314 46 FLAKECRLLQVLDLEGVYMALLDSSVGNLIHLRYLDLRKTWLKKLPSSMGNLFNLQSLDLSSTLVDPIP------LLKHV 119 (173)
Q Consensus 46 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~l~~L~~l~l~~~~~~~~p~~l~~l~~L~~L~l~~~~~~~lp------~L~~L 119 (173)
+.+..+.++..+++.+|.++++|+..-+|+.|+.++.-.|-++.+|+.++.+.+|..|++..|.+..+| .|..+
T Consensus 154 ~~~~~~~~l~~l~~~~n~l~~l~~~~i~m~~L~~ld~~~N~L~tlP~~lg~l~~L~~LyL~~Nki~~lPef~gcs~L~El 233 (565)
T KOG0472|consen 154 EDMVNLSKLSKLDLEGNKLKALPENHIAMKRLKHLDCNSNLLETLPPELGGLESLELLYLRRNKIRFLPEFPGCSLLKEL 233 (565)
T ss_pred hHHHHHHHHHHhhccccchhhCCHHHHHHHHHHhcccchhhhhcCChhhcchhhhHHHHhhhcccccCCCCCccHHHHHH
Confidence 556677777788888888887777766688888888877878888888888888888888888887777 67778
Q ss_pred EeeceeccccCCCCC--CCccccceeec-----cccccccCCCCCcCEEEEecee
Q 047314 120 CFNEFREMVVNPPVE--ASLPNLQKLIG-----TEMVCSSGRFSHLQFLKLSNIR 167 (173)
Q Consensus 120 ~l~~n~~~~~~lp~~--~~l~~L~~L~l-----~~~~~~l~~l~~L~~L~l~~~~ 167 (173)
+++.|.+. -+|.. ..++++-.||+ .++|.++.-+.+|.+||+++..
T Consensus 234 h~g~N~i~--~lpae~~~~L~~l~vLDLRdNklke~Pde~clLrsL~rLDlSNN~ 286 (565)
T KOG0472|consen 234 HVGENQIE--MLPAEHLKHLNSLLVLDLRDNKLKEVPDEICLLRSLERLDLSNND 286 (565)
T ss_pred HhcccHHH--hhHHHHhcccccceeeeccccccccCchHHHHhhhhhhhcccCCc
Confidence 88888777 67766 57777777777 6677777777777777777654
No 16
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.82 E-value=8.9e-09 Score=60.35 Aligned_cols=59 Identities=36% Similarity=0.450 Sum_probs=51.8
Q ss_pred CcccEEEecCcccccchh-hhCCCCCCcEEeccCCcccccC-ccccCCCCccEEEecCCCC
Q 047314 52 RLLQVLDLEGVYMALLDS-SVGNLIHLRYLDLRKTWLKKLP-SSMGNLFNLQSLDLSSTLV 110 (173)
Q Consensus 52 ~~L~~L~l~~n~l~~~~~-~~~~l~~L~~l~l~~~~~~~~p-~~l~~l~~L~~L~l~~~~~ 110 (173)
++|++|++++|.++.+|+ .+..+++|+++++++|.+..++ ..+..+++|+.|++++|.+
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 578999999999997775 5788999999999999999775 5789999999999999864
No 17
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=98.76 E-value=7.6e-10 Score=93.56 Aligned_cols=100 Identities=26% Similarity=0.233 Sum_probs=81.0
Q ss_pred ccccCCCcccEEEecCcccccchhh-hCCCCCCcEEeccCCcccccCccccCCCCccEEEecCCCCCCCC------cceE
Q 047314 46 FLAKECRLLQVLDLEGVYMALLDSS-VGNLIHLRYLDLRKTWLKKLPSSMGNLFNLQSLDLSSTLVDPIP------LLKH 118 (173)
Q Consensus 46 ~~~~~l~~L~~L~l~~n~l~~~~~~-~~~l~~L~~l~l~~~~~~~~p~~l~~l~~L~~L~l~~~~~~~lp------~L~~ 118 (173)
|.+-++++|++|++++|.+..+|.+ +.++..|+.|++++|.++.+|..+..+..|++|..-+|.+..+| .|+.
T Consensus 377 p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~~Lp~tva~~~~L~tL~ahsN~l~~fPe~~~l~qL~~ 456 (1081)
T KOG0618|consen 377 PVLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLTTLPDTVANLGRLHTLRAHSNQLLSFPELAQLPQLKV 456 (1081)
T ss_pred hhhccccceeeeeecccccccCCHHHHhchHHhHHHhcccchhhhhhHHHHhhhhhHHHhhcCCceeechhhhhcCcceE
Confidence 7888888999999999988877776 56788888899999988888888888888888888888777777 7888
Q ss_pred EEeeceeccccCCCCCCCccccceeec
Q 047314 119 VCFNEFREMVVNPPVEASLPNLQKLIG 145 (173)
Q Consensus 119 L~l~~n~~~~~~lp~~~~l~~L~~L~l 145 (173)
++++.|.+....+|..-.+++|++||+
T Consensus 457 lDlS~N~L~~~~l~~~~p~p~LkyLdl 483 (1081)
T KOG0618|consen 457 LDLSCNNLSEVTLPEALPSPNLKYLDL 483 (1081)
T ss_pred EecccchhhhhhhhhhCCCcccceeec
Confidence 899988888544444433388888888
No 18
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=98.71 E-value=2.5e-09 Score=90.47 Aligned_cols=69 Identities=22% Similarity=0.290 Sum_probs=58.1
Q ss_pred ccccCCCcccEEEecCcccccchhhhCCCCCCcEEeccCCcccccCccccCCCCccEEEecCCCCCCCC
Q 047314 46 FLAKECRLLQVLDLEGVYMALLDSSVGNLIHLRYLDLRKTWLKKLPSSMGNLFNLQSLDLSSTLVDPIP 114 (173)
Q Consensus 46 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~l~~L~~l~l~~~~~~~~p~~l~~l~~L~~L~l~~~~~~~lp 114 (173)
.+++.+.+|+.+....|.++.+|..+..+++|+.+....|.++.+|+...++.+|++|++..|.+..+|
T Consensus 258 ~wi~~~~nle~l~~n~N~l~~lp~ri~~~~~L~~l~~~~nel~yip~~le~~~sL~tLdL~~N~L~~lp 326 (1081)
T KOG0618|consen 258 EWIGACANLEALNANHNRLVALPLRISRITSLVSLSAAYNELEYIPPFLEGLKSLRTLDLQSNNLPSLP 326 (1081)
T ss_pred HHHHhcccceEecccchhHHhhHHHHhhhhhHHHHHhhhhhhhhCCCcccccceeeeeeehhccccccc
Confidence 677788888888888888888888888888888888888888888888888888999998888887776
No 19
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.68 E-value=1.5e-09 Score=87.80 Aligned_cols=116 Identities=28% Similarity=0.343 Sum_probs=82.1
Q ss_pred ccccCCCcccEEEecCcccccchhhhCCCCCCcEEeccCCcccccCccccCCCCccEEEecCCCCCCCC-------cceE
Q 047314 46 FLAKECRLLQVLDLEGVYMALLDSSVGNLIHLRYLDLRKTWLKKLPSSMGNLFNLQSLDLSSTLVDPIP-------LLKH 118 (173)
Q Consensus 46 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~l~~L~~l~l~~~~~~~~p~~l~~l~~L~~L~l~~~~~~~lp-------~L~~ 118 (173)
..++.+..|++++++.|+++.+|..++.++ |+.+.+++|+++.+|..++....|..++.+.|.+..+| +|+.
T Consensus 115 ~~i~~L~~lt~l~ls~NqlS~lp~~lC~lp-Lkvli~sNNkl~~lp~~ig~~~tl~~ld~s~nei~slpsql~~l~slr~ 193 (722)
T KOG0532|consen 115 EAICNLEALTFLDLSSNQLSHLPDGLCDLP-LKVLIVSNNKLTSLPEEIGLLPTLAHLDVSKNEIQSLPSQLGYLTSLRD 193 (722)
T ss_pred hhhhhhhHHHHhhhccchhhcCChhhhcCc-ceeEEEecCccccCCcccccchhHHHhhhhhhhhhhchHHhhhHHHHHH
Confidence 567778888888888888888888887774 78888888888888888887778888888888777776 5555
Q ss_pred EEeeceeccccCCCCC-CCccccceeec-----cccccccCCCCCcCEEEEec
Q 047314 119 VCFNEFREMVVNPPVE-ASLPNLQKLIG-----TEMVCSSGRFSHLQFLKLSN 165 (173)
Q Consensus 119 L~l~~n~~~~~~lp~~-~~l~~L~~L~l-----~~~~~~l~~l~~L~~L~l~~ 165 (173)
+.+..|.+. .+|.. ..++ |..||+ ..+|..+.+++.|+.|-+.+
T Consensus 194 l~vrRn~l~--~lp~El~~Lp-Li~lDfScNkis~iPv~fr~m~~Lq~l~Len 243 (722)
T KOG0532|consen 194 LNVRRNHLE--DLPEELCSLP-LIRLDFSCNKISYLPVDFRKMRHLQVLQLEN 243 (722)
T ss_pred HHHhhhhhh--hCCHHHhCCc-eeeeecccCceeecchhhhhhhhheeeeecc
Confidence 666666665 55655 5443 445555 44566666666666665554
No 20
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=98.59 E-value=7.8e-08 Score=82.06 Aligned_cols=38 Identities=11% Similarity=0.216 Sum_probs=18.8
Q ss_pred cccEEEecCcccccchhhhCCCCCCcEEeccCCcccccCc
Q 047314 53 LLQVLDLEGVYMALLDSSVGNLIHLRYLDLRKTWLKKLPS 92 (173)
Q Consensus 53 ~L~~L~l~~n~l~~~~~~~~~l~~L~~l~l~~~~~~~~p~ 92 (173)
+|+.|++++|.++.+|..+. .+|+.|++++|.+..+|.
T Consensus 221 nL~~L~Ls~N~LtsLP~~l~--~~L~~L~Ls~N~L~~LP~ 258 (754)
T PRK15370 221 NIKTLYANSNQLTSIPATLP--DTIQEMELSINRITELPE 258 (754)
T ss_pred CCCEEECCCCccccCChhhh--ccccEEECcCCccCcCCh
Confidence 56666666666655554432 234444444444444443
No 21
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.58 E-value=3.8e-08 Score=85.18 Aligned_cols=124 Identities=33% Similarity=0.450 Sum_probs=90.5
Q ss_pred ccccCCCcccEEEecCcc-cccchhhhCCCCCCcEEeccCCcccccCccccCCCCccEEEecCCC-CCCCC-------cc
Q 047314 46 FLAKECRLLQVLDLEGVY-MALLDSSVGNLIHLRYLDLRKTWLKKLPSSMGNLFNLQSLDLSSTL-VDPIP-------LL 116 (173)
Q Consensus 46 ~~~~~l~~L~~L~l~~n~-l~~~~~~~~~l~~L~~l~l~~~~~~~~p~~l~~l~~L~~L~l~~~~-~~~lp-------~L 116 (173)
+.|..++.|++||+++|. +.++|.+++.+.+|++|+++.+.+..+|.+++.+..|.+|++..+. ...+| +|
T Consensus 565 ~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~L 644 (889)
T KOG4658|consen 565 EFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGISHLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSL 644 (889)
T ss_pred HHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCccccchHHHHHHhhheeccccccccccccchhhhcccc
Confidence 458889999999999875 5699999999999999999999999999999999999999998873 23333 78
Q ss_pred eEEEeeceeccccCC-CCC-CCccccceeec-------------------------------cccccccCCCCCcCEEEE
Q 047314 117 KHVCFNEFREMVVNP-PVE-ASLPNLQKLIG-------------------------------TEMVCSSGRFSHLQFLKL 163 (173)
Q Consensus 117 ~~L~l~~n~~~~~~l-p~~-~~l~~L~~L~l-------------------------------~~~~~~l~~l~~L~~L~l 163 (173)
++|.+.......+.. ... .++..|+.+.. ...+..++.+.+|+.|.+
T Consensus 645 r~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~~s~~~~e~l~~~~~L~~~~~~l~~~~~~~~~~~~~~~~l~~L~~L~i 724 (889)
T KOG4658|consen 645 RVLRLPRSALSNDKLLLKELENLEHLENLSITISSVLLLEDLLGMTRLRSLLQSLSIEGCSKRTLISSLGSLGNLEELSI 724 (889)
T ss_pred cEEEeeccccccchhhHHhhhcccchhhheeecchhHhHhhhhhhHHHHHHhHhhhhcccccceeecccccccCcceEEE
Confidence 888887654221011 111 23333333322 223445778888999999
Q ss_pred eceeee
Q 047314 164 SNIRVE 169 (173)
Q Consensus 164 ~~~~~~ 169 (173)
.+|...
T Consensus 725 ~~~~~~ 730 (889)
T KOG4658|consen 725 LDCGIS 730 (889)
T ss_pred EcCCCc
Confidence 888764
No 22
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.57 E-value=1.3e-09 Score=88.11 Aligned_cols=119 Identities=23% Similarity=0.239 Sum_probs=102.2
Q ss_pred ccccCCCcccEEEecCcccccchhhhCCCCCCcEEeccCCcccccCccccCCCCccEEEecCCCCCCCC-------cceE
Q 047314 46 FLAKECRLLQVLDLEGVYMALLDSSVGNLIHLRYLDLRKTWLKKLPSSMGNLFNLQSLDLSSTLVDPIP-------LLKH 118 (173)
Q Consensus 46 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~l~~L~~l~l~~~~~~~~p~~l~~l~~L~~L~l~~~~~~~lp-------~L~~ 118 (173)
..++.+..|..+.+..|.+..+|..++++..|.+++++.|+++.+|..+..|+ |+.+.+++|+++.+| .|.+
T Consensus 92 ~~~~~f~~Le~liLy~n~~r~ip~~i~~L~~lt~l~ls~NqlS~lp~~lC~lp-Lkvli~sNNkl~~lp~~ig~~~tl~~ 170 (722)
T KOG0532|consen 92 EEACAFVSLESLILYHNCIRTIPEAICNLEALTFLDLSSNQLSHLPDGLCDLP-LKVLIVSNNKLTSLPEEIGLLPTLAH 170 (722)
T ss_pred hHHHHHHHHHHHHHHhccceecchhhhhhhHHHHhhhccchhhcCChhhhcCc-ceeEEEecCccccCCcccccchhHHH
Confidence 34455667888888888888889999999999999999999999999888776 888999999888777 8899
Q ss_pred EEeeceeccccCCCCC-CCccccceeec-----cccccccCCCCCcCEEEEeceee
Q 047314 119 VCFNEFREMVVNPPVE-ASLPNLQKLIG-----TEMVCSSGRFSHLQFLKLSNIRV 168 (173)
Q Consensus 119 L~l~~n~~~~~~lp~~-~~l~~L~~L~l-----~~~~~~l~~l~~L~~L~l~~~~~ 168 (173)
++.+.|.+. .+|.. +++.+|+.|.+ ..+|.++..|+ |.+||+++...
T Consensus 171 ld~s~nei~--slpsql~~l~slr~l~vrRn~l~~lp~El~~Lp-Li~lDfScNki 223 (722)
T KOG0532|consen 171 LDVSKNEIQ--SLPSQLGYLTSLRDLNVRRNHLEDLPEELCSLP-LIRLDFSCNKI 223 (722)
T ss_pred hhhhhhhhh--hchHHhhhHHHHHHHHHhhhhhhhCCHHHhCCc-eeeeecccCce
Confidence 999999998 89988 99999998887 67899988777 88999998654
No 23
>PLN03150 hypothetical protein; Provisional
Probab=98.55 E-value=1.7e-07 Score=78.81 Aligned_cols=92 Identities=22% Similarity=0.349 Sum_probs=74.7
Q ss_pred cccEEEecCcccc-cchhhhCCCCCCcEEeccCCccc-ccCccccCCCCccEEEecCCCCC-CCC-------cceEEEee
Q 047314 53 LLQVLDLEGVYMA-LLDSSVGNLIHLRYLDLRKTWLK-KLPSSMGNLFNLQSLDLSSTLVD-PIP-------LLKHVCFN 122 (173)
Q Consensus 53 ~L~~L~l~~n~l~-~~~~~~~~l~~L~~l~l~~~~~~-~~p~~l~~l~~L~~L~l~~~~~~-~lp-------~L~~L~l~ 122 (173)
.++.|++.+|.++ .+|..+..+++|+.|++++|.+. .+|..++.+++|+.|++++|.+. .+| +|+.|+++
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN 498 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence 3778899999988 78888999999999999999887 78888999999999999999764 444 78999999
Q ss_pred ceeccccCCCCC-CC-ccccceeec
Q 047314 123 EFREMVVNPPVE-AS-LPNLQKLIG 145 (173)
Q Consensus 123 ~n~~~~~~lp~~-~~-l~~L~~L~l 145 (173)
+|.+.+ .+|.. +. ..++..+++
T Consensus 499 ~N~l~g-~iP~~l~~~~~~~~~l~~ 522 (623)
T PLN03150 499 GNSLSG-RVPAALGGRLLHRASFNF 522 (623)
T ss_pred CCcccc-cCChHHhhccccCceEEe
Confidence 999887 77876 43 345555555
No 24
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=98.54 E-value=1.5e-07 Score=80.42 Aligned_cols=89 Identities=21% Similarity=0.175 Sum_probs=58.0
Q ss_pred CCcEEeccCCcccccCccccC-----------------CCCccEEEecCCCCCCCC----cceEEEeeceeccccCCCCC
Q 047314 76 HLRYLDLRKTWLKKLPSSMGN-----------------LFNLQSLDLSSTLVDPIP----LLKHVCFNEFREMVVNPPVE 134 (173)
Q Consensus 76 ~L~~l~l~~~~~~~~p~~l~~-----------------l~~L~~L~l~~~~~~~lp----~L~~L~l~~n~~~~~~lp~~ 134 (173)
+|+.|++++|+++.+|..... ..+|+.|++++|.+..+| +|+.|++++|.+. .+|..
T Consensus 343 ~Lq~LdLS~N~Ls~LP~lp~~L~~L~Ls~N~L~~LP~l~~~L~~LdLs~N~Lt~LP~l~s~L~~LdLS~N~Ls--sIP~l 420 (788)
T PRK15387 343 GLQELSVSDNQLASLPTLPSELYKLWAYNNRLTSLPALPSGLKELIVSGNRLTSLPVLPSELKELMVSGNRLT--SLPML 420 (788)
T ss_pred ccceEecCCCccCCCCCCCcccceehhhccccccCcccccccceEEecCCcccCCCCcccCCCEEEccCCcCC--CCCcc
Confidence 466777777766655532111 124666777777666665 6777777777776 56643
Q ss_pred CCccccceeec-----cccccccCCCCCcCEEEEeceee
Q 047314 135 ASLPNLQKLIG-----TEMVCSSGRFSHLQFLKLSNIRV 168 (173)
Q Consensus 135 ~~l~~L~~L~l-----~~~~~~l~~l~~L~~L~l~~~~~ 168 (173)
..+|+.|++ ..+|..+.++++|+.|+++++.-
T Consensus 421 --~~~L~~L~Ls~NqLt~LP~sl~~L~~L~~LdLs~N~L 457 (788)
T PRK15387 421 --PSGLLSLSVYRNQLTRLPESLIHLSSETTVNLEGNPL 457 (788)
T ss_pred --hhhhhhhhhccCcccccChHHhhccCCCeEECCCCCC
Confidence 234556666 66788888899999999887643
No 25
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.51 E-value=5.3e-08 Score=77.46 Aligned_cols=120 Identities=32% Similarity=0.352 Sum_probs=69.4
Q ss_pred ccccCCC-cccEEEecCcccccchhhhCCCCCCcEEeccCCcccccCccccCCCCccEEEecCCCCCCCC-------cce
Q 047314 46 FLAKECR-LLQVLDLEGVYMALLDSSVGNLIHLRYLDLRKTWLKKLPSSMGNLFNLQSLDLSSTLVDPIP-------LLK 117 (173)
Q Consensus 46 ~~~~~l~-~L~~L~l~~n~l~~~~~~~~~l~~L~~l~l~~~~~~~~p~~l~~l~~L~~L~l~~~~~~~lp-------~L~ 117 (173)
+....+. +|+.|++++|.+..+|..+..+++|+.|+++.|.+..+|...+..+.|+.+++++|.+..+| .|+
T Consensus 133 ~~~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~~~L~~L~ls~N~i~~l~~~~~~~~~L~ 212 (394)
T COG4886 133 PLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFNDLSDLPKLLSNLSNLNNLDLSGNKISDLPPEIELLSALE 212 (394)
T ss_pred cccccchhhcccccccccchhhhhhhhhccccccccccCCchhhhhhhhhhhhhhhhheeccCCccccCchhhhhhhhhh
Confidence 4444443 67777777777776666666777777777777777777666556667777777777666666 356
Q ss_pred EEEeeceeccccCCCCC-CCccccceeec-----cccccccCCCCCcCEEEEecee
Q 047314 118 HVCFNEFREMVVNPPVE-ASLPNLQKLIG-----TEMVCSSGRFSHLQFLKLSNIR 167 (173)
Q Consensus 118 ~L~l~~n~~~~~~lp~~-~~l~~L~~L~l-----~~~~~~l~~l~~L~~L~l~~~~ 167 (173)
.+.+++|... ..+.. +.++++..+.+ ...+..++.++.++.|++++..
T Consensus 213 ~l~~~~N~~~--~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~l~~l~~L~~s~n~ 266 (394)
T COG4886 213 ELDLSNNSII--ELLSSLSNLKNLSGLELSNNKLEDLPESIGNLSNLETLDLSNNQ 266 (394)
T ss_pred hhhhcCCcce--ecchhhhhcccccccccCCceeeeccchhccccccceecccccc
Confidence 6666666433 23333 44444444433 1123444555555555555443
No 26
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.48 E-value=1.4e-08 Score=76.87 Aligned_cols=97 Identities=26% Similarity=0.226 Sum_probs=62.1
Q ss_pred ccccCCCcccEEEecCcccccchhhhCCCCCCcEEeccCCcccccCccccCCCCccEEEecCCCCCCCC-------cceE
Q 047314 46 FLAKECRLLQVLDLEGVYMALLDSSVGNLIHLRYLDLRKTWLKKLPSSMGNLFNLQSLDLSSTLVDPIP-------LLKH 118 (173)
Q Consensus 46 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~l~~L~~l~l~~~~~~~~p~~l~~l~~L~~L~l~~~~~~~lp-------~L~~ 118 (173)
..+..+..|+.+++++|.|+.+-+++.-++.++.|+++.|++..+-. +..+++|+.||+++|.+..+. +++.
T Consensus 278 ~~~dTWq~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~i~~v~n-La~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIKt 356 (490)
T KOG1259|consen 278 VSADTWQELTELDLSGNLITQIDESVKLAPKLRRLILSQNRIRTVQN-LAELPQLQLLDLSGNLLAECVGWHLKLGNIKT 356 (490)
T ss_pred EecchHhhhhhccccccchhhhhhhhhhccceeEEeccccceeeehh-hhhcccceEeecccchhHhhhhhHhhhcCEee
Confidence 34455566777888888777766776667777888887777765533 667777788888877554433 5566
Q ss_pred EEeeceeccccCCCCCCCccccceeec
Q 047314 119 VCFNEFREMVVNPPVEASLPNLQKLIG 145 (173)
Q Consensus 119 L~l~~n~~~~~~lp~~~~l~~L~~L~l 145 (173)
|.++.|.+. ++...+.+-+|..||+
T Consensus 357 L~La~N~iE--~LSGL~KLYSLvnLDl 381 (490)
T KOG1259|consen 357 LKLAQNKIE--TLSGLRKLYSLVNLDL 381 (490)
T ss_pred eehhhhhHh--hhhhhHhhhhheeccc
Confidence 666665554 3322245555555555
No 27
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=98.46 E-value=6.8e-07 Score=76.42 Aligned_cols=106 Identities=15% Similarity=0.170 Sum_probs=68.0
Q ss_pred CcccEEEecCcccccchhhhCCCCCCcEEeccCCcccccCccccCCCCccEEEecCCCCCCCC-----cceEEEeeceec
Q 047314 52 RLLQVLDLEGVYMALLDSSVGNLIHLRYLDLRKTWLKKLPSSMGNLFNLQSLDLSSTLVDPIP-----LLKHVCFNEFRE 126 (173)
Q Consensus 52 ~~L~~L~l~~n~l~~~~~~~~~l~~L~~l~l~~~~~~~~p~~l~~l~~L~~L~l~~~~~~~lp-----~L~~L~l~~n~~ 126 (173)
++++.|++++|.++.+|..+. .+|+.|++++|.++.+|..+. .+|+.|++++|.+..+| +|+.|++++|.+
T Consensus 199 ~~L~~L~Ls~N~LtsLP~~l~--~nL~~L~Ls~N~LtsLP~~l~--~~L~~L~Ls~N~L~~LP~~l~s~L~~L~Ls~N~L 274 (754)
T PRK15370 199 EQITTLILDNNELKSLPENLQ--GNIKTLYANSNQLTSIPATLP--DTIQEMELSINRITELPERLPSALQSLDLFHNKI 274 (754)
T ss_pred cCCcEEEecCCCCCcCChhhc--cCCCEEECCCCccccCChhhh--ccccEEECcCCccCcCChhHhCCCCEEECcCCcc
Confidence 357777777777777776554 467777777777777776543 35777778877777776 677788877777
Q ss_pred cccCCCCCCCccccceeec-----cccccccCCCCCcCEEEEece
Q 047314 127 MVVNPPVEASLPNLQKLIG-----TEMVCSSGRFSHLQFLKLSNI 166 (173)
Q Consensus 127 ~~~~lp~~~~l~~L~~L~l-----~~~~~~l~~l~~L~~L~l~~~ 166 (173)
. .+|.. -.++|+.|++ ..+|..+. ++|+.|+++++
T Consensus 275 ~--~LP~~-l~~sL~~L~Ls~N~Lt~LP~~lp--~sL~~L~Ls~N 314 (754)
T PRK15370 275 S--CLPEN-LPEELRYLSVYDNSIRTLPAHLP--SGITHLNVQSN 314 (754)
T ss_pred C--ccccc-cCCCCcEEECCCCccccCcccch--hhHHHHHhcCC
Confidence 7 56653 1246777776 33333222 24555555543
No 28
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=98.45 E-value=3.2e-08 Score=76.12 Aligned_cols=121 Identities=19% Similarity=0.106 Sum_probs=60.8
Q ss_pred cccCCCcccEEEecCcccc-cchhhhCCCCC---CcEEeccCCccc-----ccCccccCC-CCccEEEecCCCCCC----
Q 047314 47 LAKECRLLQVLDLEGVYMA-LLDSSVGNLIH---LRYLDLRKTWLK-----KLPSSMGNL-FNLQSLDLSSTLVDP---- 112 (173)
Q Consensus 47 ~~~~l~~L~~L~l~~n~l~-~~~~~~~~l~~---L~~l~l~~~~~~-----~~p~~l~~l-~~L~~L~l~~~~~~~---- 112 (173)
.+..+++|+.|++++|.+. ..+..+..+.. |+.|++++|.+. .+...+..+ ++|+.+++++|.+..
T Consensus 76 ~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~ 155 (319)
T cd00116 76 GLTKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCE 155 (319)
T ss_pred HHHhcCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHH
Confidence 3455666667777666665 34444433333 666666666554 112233444 566666666665441
Q ss_pred -C-------CcceEEEeeceeccccCC---CCC-CCccccceeec----------cccccccCCCCCcCEEEEecee
Q 047314 113 -I-------PLLKHVCFNEFREMVVNP---PVE-ASLPNLQKLIG----------TEMVCSSGRFSHLQFLKLSNIR 167 (173)
Q Consensus 113 -l-------p~L~~L~l~~n~~~~~~l---p~~-~~l~~L~~L~l----------~~~~~~l~~l~~L~~L~l~~~~ 167 (173)
+ ++|+.|++++|.+.+..+ +.. ..+++|++|++ ..++..+..+++|+.|+++++.
T Consensus 156 ~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~ 232 (319)
T cd00116 156 ALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNN 232 (319)
T ss_pred HHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCc
Confidence 0 146666666665553111 111 22345666655 1122334455566666666543
No 29
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.44 E-value=3.5e-07 Score=49.86 Aligned_cols=40 Identities=25% Similarity=0.334 Sum_probs=28.5
Q ss_pred CcccEEEecCcccccchhhhCCCCCCcEEeccCCcccccC
Q 047314 52 RLLQVLDLEGVYMALLDSSVGNLIHLRYLDLRKTWLKKLP 91 (173)
Q Consensus 52 ~~L~~L~l~~n~l~~~~~~~~~l~~L~~l~l~~~~~~~~p 91 (173)
++|++|++++|+|+.+|+.+.++++|+.|++++|.++.++
T Consensus 1 ~~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~~i~ 40 (44)
T PF12799_consen 1 KNLEELDLSNNQITDLPPELSNLPNLETLNLSNNPISDIS 40 (44)
T ss_dssp TT-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCSBEG
T ss_pred CcceEEEccCCCCcccCchHhCCCCCCEEEecCCCCCCCc
Confidence 4677888888888877777778888888888877776553
No 30
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=98.41 E-value=5.6e-08 Score=74.81 Aligned_cols=14 Identities=29% Similarity=0.235 Sum_probs=6.6
Q ss_pred CCCcEEeccCCccc
Q 047314 75 IHLRYLDLRKTWLK 88 (173)
Q Consensus 75 ~~L~~l~l~~~~~~ 88 (173)
++|+.+++++|.++
T Consensus 137 ~~L~~L~L~~n~l~ 150 (319)
T cd00116 137 PALEKLVLGRNRLE 150 (319)
T ss_pred CCceEEEcCCCcCC
Confidence 44455555444433
No 31
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.37 E-value=7.4e-08 Score=73.07 Aligned_cols=99 Identities=19% Similarity=0.170 Sum_probs=83.0
Q ss_pred ccccCCCcccEEEecCcccccchhhhCCCCCCcEEeccCCcccccCccccCCCCccEEEecCCCCCCCC------cceEE
Q 047314 46 FLAKECRLLQVLDLEGVYMALLDSSVGNLIHLRYLDLRKTWLKKLPSSMGNLFNLQSLDLSSTLVDPIP------LLKHV 119 (173)
Q Consensus 46 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~l~~L~~l~l~~~~~~~~p~~l~~l~~L~~L~l~~~~~~~lp------~L~~L 119 (173)
..+.-++.++.|++++|.+..+.. +..+.+|+.|++++|.+..+-.+-.++.+..+|.+++|.+..+. +|..|
T Consensus 301 ESvKL~Pkir~L~lS~N~i~~v~n-La~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIKtL~La~N~iE~LSGL~KLYSLvnL 379 (490)
T KOG1259|consen 301 ESVKLAPKLRRLILSQNRIRTVQN-LAELPQLQLLDLSGNLLAECVGWHLKLGNIKTLKLAQNKIETLSGLRKLYSLVNL 379 (490)
T ss_pred hhhhhccceeEEeccccceeeehh-hhhcccceEeecccchhHhhhhhHhhhcCEeeeehhhhhHhhhhhhHhhhhheec
Confidence 456668899999999999986544 78899999999999999887766678899999999999777665 89999
Q ss_pred EeeceeccccCCCCC-CCccccceeec
Q 047314 120 CFNEFREMVVNPPVE-ASLPNLQKLIG 145 (173)
Q Consensus 120 ~l~~n~~~~~~lp~~-~~l~~L~~L~l 145 (173)
++.+|++...+-.+. |++|.|+++.+
T Consensus 380 Dl~~N~Ie~ldeV~~IG~LPCLE~l~L 406 (490)
T KOG1259|consen 380 DLSSNQIEELDEVNHIGNLPCLETLRL 406 (490)
T ss_pred cccccchhhHHHhcccccccHHHHHhh
Confidence 999999983333455 99999999887
No 32
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.35 E-value=1.9e-07 Score=74.33 Aligned_cols=121 Identities=30% Similarity=0.344 Sum_probs=99.2
Q ss_pred ccccCCCcccEEEecCcccccchhhhCCCC-CCcEEeccCCcccccCccccCCCCccEEEecCCCCCCCC-------cce
Q 047314 46 FLAKECRLLQVLDLEGVYMALLDSSVGNLI-HLRYLDLRKTWLKKLPSSMGNLFNLQSLDLSSTLVDPIP-------LLK 117 (173)
Q Consensus 46 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~l~-~L~~l~l~~~~~~~~p~~l~~l~~L~~L~l~~~~~~~lp-------~L~ 117 (173)
.....++.++.+++.+|.++.+++....+. +|+.++++.|.+..+|..+..++.|+.|++++|.+..+| .|+
T Consensus 110 ~~~~~~~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~~~L~ 189 (394)
T COG4886 110 SELLELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFNDLSDLPKLLSNLSNLN 189 (394)
T ss_pred hhhhcccceeEEecCCcccccCccccccchhhcccccccccchhhhhhhhhccccccccccCCchhhhhhhhhhhhhhhh
Confidence 344555779999999999999999888885 999999999999999888899999999999999887776 788
Q ss_pred EEEeeceeccccCCCCC-CCccccceeec-----cccccccCCCCCcCEEEEeceee
Q 047314 118 HVCFNEFREMVVNPPVE-ASLPNLQKLIG-----TEMVCSSGRFSHLQFLKLSNIRV 168 (173)
Q Consensus 118 ~L~l~~n~~~~~~lp~~-~~l~~L~~L~l-----~~~~~~l~~l~~L~~L~l~~~~~ 168 (173)
.+++++|.+. ++|.. +....|+.+.+ ...+..+..++++..+.+.+...
T Consensus 190 ~L~ls~N~i~--~l~~~~~~~~~L~~l~~~~N~~~~~~~~~~~~~~l~~l~l~~n~~ 244 (394)
T COG4886 190 NLDLSGNKIS--DLPPEIELLSALEELDLSNNSIIELLSSLSNLKNLSGLELSNNKL 244 (394)
T ss_pred heeccCCccc--cCchhhhhhhhhhhhhhcCCcceecchhhhhcccccccccCCcee
Confidence 9999999999 88876 56666888887 24566677788777777665543
No 33
>PLN03150 hypothetical protein; Provisional
Probab=98.34 E-value=9.3e-07 Score=74.48 Aligned_cols=81 Identities=25% Similarity=0.377 Sum_probs=69.9
Q ss_pred ccccCCCcccEEEecCcccc-cchhhhCCCCCCcEEeccCCccc-ccCccccCCCCccEEEecCCCCC-CCC--------
Q 047314 46 FLAKECRLLQVLDLEGVYMA-LLDSSVGNLIHLRYLDLRKTWLK-KLPSSMGNLFNLQSLDLSSTLVD-PIP-------- 114 (173)
Q Consensus 46 ~~~~~l~~L~~L~l~~n~l~-~~~~~~~~l~~L~~l~l~~~~~~-~~p~~l~~l~~L~~L~l~~~~~~-~lp-------- 114 (173)
+.++.+++|+.|++++|.++ .+|..+..+++|+.|++++|.+. .+|..++.+++|+.|++++|.+. .+|
T Consensus 436 ~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~~~~ 515 (623)
T PLN03150 436 NDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAALGGRLL 515 (623)
T ss_pred HHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcCCcccccCChHHhhccc
Confidence 56788999999999999998 89999999999999999999998 88999999999999999999764 566
Q ss_pred cceEEEeeceec
Q 047314 115 LLKHVCFNEFRE 126 (173)
Q Consensus 115 ~L~~L~l~~n~~ 126 (173)
++..+++.+|..
T Consensus 516 ~~~~l~~~~N~~ 527 (623)
T PLN03150 516 HRASFNFTDNAG 527 (623)
T ss_pred cCceEEecCCcc
Confidence 344667776643
No 34
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=98.30 E-value=2.1e-06 Score=73.52 Aligned_cols=83 Identities=23% Similarity=0.193 Sum_probs=50.1
Q ss_pred cccEEEecCcccccchhhhCCCCCCcEEeccCCcccccCccccCCCCccEEEecCCCCCCCC----cceEEEeeceeccc
Q 047314 53 LLQVLDLEGVYMALLDSSVGNLIHLRYLDLRKTWLKKLPSSMGNLFNLQSLDLSSTLVDPIP----LLKHVCFNEFREMV 128 (173)
Q Consensus 53 ~L~~L~l~~n~l~~~~~~~~~l~~L~~l~l~~~~~~~~p~~l~~l~~L~~L~l~~~~~~~lp----~L~~L~l~~n~~~~ 128 (173)
+++.|++.+|+++.+|.. +++|+.|++++|.++.+|.. .++|+.|++++|.+..+| .|+.|++++|.+.
T Consensus 223 ~L~~L~L~~N~Lt~LP~l---p~~Lk~LdLs~N~LtsLP~l---p~sL~~L~Ls~N~L~~Lp~lp~~L~~L~Ls~N~Lt- 295 (788)
T PRK15387 223 HITTLVIPDNNLTSLPAL---PPELRTLEVSGNQLTSLPVL---PPGLLELSIFSNPLTHLPALPSGLCKLWIFGNQLT- 295 (788)
T ss_pred CCCEEEccCCcCCCCCCC---CCCCcEEEecCCccCcccCc---ccccceeeccCCchhhhhhchhhcCEEECcCCccc-
Confidence 566666666666655542 35667777777766666542 245666666666555544 5666677776666
Q ss_pred cCCCCCCCccccceeec
Q 047314 129 VNPPVEASLPNLQKLIG 145 (173)
Q Consensus 129 ~~lp~~~~l~~L~~L~l 145 (173)
.+|. ..++|+.|++
T Consensus 296 -~LP~--~p~~L~~LdL 309 (788)
T PRK15387 296 -SLPV--LPPGLQELSV 309 (788)
T ss_pred -cccc--cccccceeEC
Confidence 4554 2356777776
No 35
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.29 E-value=5.7e-07 Score=52.56 Aligned_cols=52 Identities=35% Similarity=0.463 Sum_probs=41.7
Q ss_pred CCCcEEeccCCcccccCc-cccCCCCccEEEecCCCCCCCC--------cceEEEeeceec
Q 047314 75 IHLRYLDLRKTWLKKLPS-SMGNLFNLQSLDLSSTLVDPIP--------LLKHVCFNEFRE 126 (173)
Q Consensus 75 ~~L~~l~l~~~~~~~~p~-~l~~l~~L~~L~l~~~~~~~lp--------~L~~L~l~~n~~ 126 (173)
++|+.+++++|.+..+|. .+..+++|++|++++|.+..++ +|+++++++|.+
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 468999999999998874 6788999999999998665443 778888777753
No 36
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.28 E-value=7.1e-07 Score=48.65 Aligned_cols=40 Identities=35% Similarity=0.538 Sum_probs=34.5
Q ss_pred CCCcEEeccCCcccccCccccCCCCccEEEecCCCCCCCC
Q 047314 75 IHLRYLDLRKTWLKKLPSSMGNLFNLQSLDLSSTLVDPIP 114 (173)
Q Consensus 75 ~~L~~l~l~~~~~~~~p~~l~~l~~L~~L~l~~~~~~~lp 114 (173)
++|++|++++|+++.+|+.++.|++|+.|++++|.+.+++
T Consensus 1 ~~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~~i~ 40 (44)
T PF12799_consen 1 KNLEELDLSNNQITDLPPELSNLPNLETLNLSNNPISDIS 40 (44)
T ss_dssp TT-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCSBEG
T ss_pred CcceEEEccCCCCcccCchHhCCCCCCEEEecCCCCCCCc
Confidence 4789999999999999988999999999999999888764
No 37
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=98.17 E-value=8.8e-08 Score=74.75 Aligned_cols=98 Identities=21% Similarity=0.222 Sum_probs=64.8
Q ss_pred ccccCCCc-ccEEEecCcccccchhh-hCCCCCCcEEeccCCccccc-CccccCCCCccEEEecC-CCCCCCC-------
Q 047314 46 FLAKECRL-LQVLDLEGVYMALLDSS-VGNLIHLRYLDLRKTWLKKL-PSSMGNLFNLQSLDLSS-TLVDPIP------- 114 (173)
Q Consensus 46 ~~~~~l~~-L~~L~l~~n~l~~~~~~-~~~l~~L~~l~l~~~~~~~~-p~~l~~l~~L~~L~l~~-~~~~~lp------- 114 (173)
.+-.+++. ...+++..|+|+.+|+. |..+++|+.++++.|.|+.+ |+.|..+.++..|-+.+ |+|+++|
T Consensus 60 eVP~~LP~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL 139 (498)
T KOG4237|consen 60 EVPANLPPETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGL 139 (498)
T ss_pred cCcccCCCcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhH
Confidence 34444443 44578888888876665 77888899999998888855 77888888876666655 7888887
Q ss_pred -cceEEEeeceeccccCCCCC--CCccccceeec
Q 047314 115 -LLKHVCFNEFREMVVNPPVE--ASLPNLQKLIG 145 (173)
Q Consensus 115 -~L~~L~l~~n~~~~~~lp~~--~~l~~L~~L~l 145 (173)
+++.|.+.-|.+. .+++. ..+++|..|.+
T Consensus 140 ~slqrLllNan~i~--Cir~~al~dL~~l~lLsl 171 (498)
T KOG4237|consen 140 SSLQRLLLNANHIN--CIRQDALRDLPSLSLLSL 171 (498)
T ss_pred HHHHHHhcChhhhc--chhHHHHHHhhhcchhcc
Confidence 4444545544444 44433 45555555544
No 38
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=98.16 E-value=1e-07 Score=74.43 Aligned_cols=98 Identities=21% Similarity=0.185 Sum_probs=74.5
Q ss_pred ccccCCCcccEEEecCcccc-cchhhhCCCCCCcEEeccC-CcccccCc-cccCCCCccEEEecCCCCCCCC--------
Q 047314 46 FLAKECRLLQVLDLEGVYMA-LLDSSVGNLIHLRYLDLRK-TWLKKLPS-SMGNLFNLQSLDLSSTLVDPIP-------- 114 (173)
Q Consensus 46 ~~~~~l~~L~~L~l~~n~l~-~~~~~~~~l~~L~~l~l~~-~~~~~~p~-~l~~l~~L~~L~l~~~~~~~lp-------- 114 (173)
.+|+.+++|+.|+++.|+|+ .-|..|..++.+..|-+.+ |+|+.+|. .|+.+.+++.|.+.-|.+.-++
T Consensus 85 ~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLllNan~i~Cir~~al~dL~ 164 (498)
T KOG4237|consen 85 GAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLLNANHINCIRQDALRDLP 164 (498)
T ss_pred hhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhcChhhhcchhHHHHHHhh
Confidence 68999999999999999999 5677799999977766654 99999985 5789999999988887655443
Q ss_pred cceEEEeeceeccccCCCCC--CCccccceeec
Q 047314 115 LLKHVCFNEFREMVVNPPVE--ASLPNLQKLIG 145 (173)
Q Consensus 115 ~L~~L~l~~n~~~~~~lp~~--~~l~~L~~L~l 145 (173)
++..|.+..|.+. .++.. ..+.+++.+++
T Consensus 165 ~l~lLslyDn~~q--~i~~~tf~~l~~i~tlhl 195 (498)
T KOG4237|consen 165 SLSLLSLYDNKIQ--SICKGTFQGLAAIKTLHL 195 (498)
T ss_pred hcchhcccchhhh--hhccccccchhccchHhh
Confidence 6667777777666 55542 55555555554
No 39
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.97 E-value=7.4e-06 Score=58.84 Aligned_cols=57 Identities=21% Similarity=0.321 Sum_probs=31.4
Q ss_pred cccEEEecCcccccchhhhCCCCCCcEEeccCCcccccCccccC-CCCccEEEecCCCC
Q 047314 53 LLQVLDLEGVYMALLDSSVGNLIHLRYLDLRKTWLKKLPSSMGN-LFNLQSLDLSSTLV 110 (173)
Q Consensus 53 ~L~~L~l~~n~l~~~~~~~~~l~~L~~l~l~~~~~~~~p~~l~~-l~~L~~L~l~~~~~ 110 (173)
+...+++.+|.+-.+ ..+..+..|.+|.+.+|.|+.+.+.+.. +++|..|.+.+|.+
T Consensus 43 ~~d~iDLtdNdl~~l-~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi 100 (233)
T KOG1644|consen 43 QFDAIDLTDNDLRKL-DNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSI 100 (233)
T ss_pred ccceecccccchhhc-ccCCCccccceEEecCCcceeeccchhhhccccceEEecCcch
Confidence 444566666665533 2345556666666666666655444432 34566666666544
No 40
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.95 E-value=9.2e-08 Score=79.79 Aligned_cols=92 Identities=22% Similarity=0.182 Sum_probs=60.3
Q ss_pred CCcccEEEecCcccccchhhhCCCCCCcEEeccCCcccccCccccCCCCccEEEecCCCCCCCC-------cceEEEeec
Q 047314 51 CRLLQVLDLEGVYMALLDSSVGNLIHLRYLDLRKTWLKKLPSSMGNLFNLQSLDLSSTLVDPIP-------LLKHVCFNE 123 (173)
Q Consensus 51 l~~L~~L~l~~n~l~~~~~~~~~l~~L~~l~l~~~~~~~~p~~l~~l~~L~~L~l~~~~~~~lp-------~L~~L~l~~ 123 (173)
...|.+.+.++|.+..+-.++.-++.++.|+++.|++..+- .+..|++|.+||+++|.++.+| .|..|.+.+
T Consensus 163 Wn~L~~a~fsyN~L~~mD~SLqll~ale~LnLshNk~~~v~-~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~L~~L~lrn 241 (1096)
T KOG1859|consen 163 WNKLATASFSYNRLVLMDESLQLLPALESLNLSHNKFTKVD-NLRRLPKLKHLDLSYNCLRHVPQLSMVGCKLQLLNLRN 241 (1096)
T ss_pred hhhHhhhhcchhhHHhHHHHHHHHHHhhhhccchhhhhhhH-HHHhcccccccccccchhccccccchhhhhheeeeecc
Confidence 34566667777777666666666677777777777766543 5566677777777777666666 566677777
Q ss_pred eeccccCCCCCCCccccceeec
Q 047314 124 FREMVVNPPVEASLPNLQKLIG 145 (173)
Q Consensus 124 n~~~~~~lp~~~~l~~L~~L~l 145 (173)
|-++ ++....++++|+.||+
T Consensus 242 N~l~--tL~gie~LksL~~LDl 261 (1096)
T KOG1859|consen 242 NALT--TLRGIENLKSLYGLDL 261 (1096)
T ss_pred cHHH--hhhhHHhhhhhhccch
Confidence 7665 4433356666666666
No 41
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=97.84 E-value=3.1e-06 Score=67.98 Aligned_cols=79 Identities=27% Similarity=0.351 Sum_probs=40.2
Q ss_pred ccCCCcccEEEecCcccccchhhhCCCCCCcEEeccCCcccccCccccCCCCccEEEecCCCCCCCC------cceEEEe
Q 047314 48 AKECRLLQVLDLEGVYMALLDSSVGNLIHLRYLDLRKTWLKKLPSSMGNLFNLQSLDLSSTLVDPIP------LLKHVCF 121 (173)
Q Consensus 48 ~~~l~~L~~L~l~~n~l~~~~~~~~~l~~L~~l~l~~~~~~~~p~~l~~l~~L~~L~l~~~~~~~lp------~L~~L~l 121 (173)
+..+++++.+++.+|.|..+...+..+++|+++++++|.|+.+. .+..++.|+.|++.+|.+..++ .|+.+++
T Consensus 91 l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~~i~-~l~~l~~L~~L~l~~N~i~~~~~~~~l~~L~~l~l 169 (414)
T KOG0531|consen 91 LSKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKITKLE-GLSTLTLLKELNLSGNLISDISGLESLKSLKLLDL 169 (414)
T ss_pred cccccceeeeeccccchhhcccchhhhhcchheecccccccccc-chhhccchhhheeccCcchhccCCccchhhhcccC
Confidence 44555555555555555544333445555555555555555442 2334444555555555444333 4455555
Q ss_pred eceecc
Q 047314 122 NEFREM 127 (173)
Q Consensus 122 ~~n~~~ 127 (173)
++|.+.
T Consensus 170 ~~n~i~ 175 (414)
T KOG0531|consen 170 SYNRIV 175 (414)
T ss_pred Ccchhh
Confidence 555554
No 42
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=97.78 E-value=9.9e-06 Score=62.44 Aligned_cols=125 Identities=17% Similarity=0.092 Sum_probs=94.3
Q ss_pred ccccCCCcccEEEecCcccc-cchhh----hCCCCCCcEEeccCCcccc--------------cCccccCCCCccEEEec
Q 047314 46 FLAKECRLLQVLDLEGVYMA-LLDSS----VGNLIHLRYLDLRKTWLKK--------------LPSSMGNLFNLQSLDLS 106 (173)
Q Consensus 46 ~~~~~l~~L~~L~l~~n~l~-~~~~~----~~~l~~L~~l~l~~~~~~~--------------~p~~l~~l~~L~~L~l~ 106 (173)
+++..+++|++++|+.|.+. ..++. +.++..|+.|.+.+|++.. .....+.-+.|+++...
T Consensus 86 ~aL~~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~ 165 (382)
T KOG1909|consen 86 KALLGCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICG 165 (382)
T ss_pred HHHhcCCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEee
Confidence 77788889999999999987 55444 3467889999999987662 12234556789999999
Q ss_pred CCCCCCCC------------cceEEEeeceeccccCC---CCC-CCccccceeec----------cccccccCCCCCcCE
Q 047314 107 STLVDPIP------------LLKHVCFNEFREMVVNP---PVE-ASLPNLQKLIG----------TEMVCSSGRFSHLQF 160 (173)
Q Consensus 107 ~~~~~~lp------------~L~~L~l~~n~~~~~~l---p~~-~~l~~L~~L~l----------~~~~~~l~~l~~L~~ 160 (173)
.|++..-+ .|+.+.+..|.+....+ ... ..+++|+.|++ ..+...++.+++|+.
T Consensus 166 rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~E 245 (382)
T KOG1909|consen 166 RNRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRE 245 (382)
T ss_pred ccccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchhee
Confidence 99877655 78889999988874222 123 67899999999 335556888999999
Q ss_pred EEEeceeeec
Q 047314 161 LKLSNIRVEE 170 (173)
Q Consensus 161 L~l~~~~~~~ 170 (173)
+++.+|-..+
T Consensus 246 l~l~dcll~~ 255 (382)
T KOG1909|consen 246 LNLGDCLLEN 255 (382)
T ss_pred eccccccccc
Confidence 9999885543
No 43
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=97.70 E-value=5.4e-06 Score=65.66 Aligned_cols=35 Identities=17% Similarity=0.063 Sum_probs=15.4
Q ss_pred CCcccEEEecCcccc--cchhhhCCCCCCcEEeccCC
Q 047314 51 CRLLQVLDLEGVYMA--LLDSSVGNLIHLRYLDLRKT 85 (173)
Q Consensus 51 l~~L~~L~l~~n~l~--~~~~~~~~l~~L~~l~l~~~ 85 (173)
+++++.|.+++|.++ ++..-....+++..|++..|
T Consensus 196 l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N 232 (505)
T KOG3207|consen 196 LSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEAN 232 (505)
T ss_pred hhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcc
Confidence 445555555555554 22222223444444444444
No 44
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=97.70 E-value=9.3e-06 Score=64.35 Aligned_cols=120 Identities=21% Similarity=0.206 Sum_probs=66.6
Q ss_pred cccCCCcccEEEecCcccc---cchhhhCCCCCCcEEeccCCccccc-Cccc-cCCCCccEEEecCCCCCC---------
Q 047314 47 LAKECRLLQVLDLEGVYMA---LLDSSVGNLIHLRYLDLRKTWLKKL-PSSM-GNLFNLQSLDLSSTLVDP--------- 112 (173)
Q Consensus 47 ~~~~l~~L~~L~l~~n~l~---~~~~~~~~l~~L~~l~l~~~~~~~~-p~~l-~~l~~L~~L~l~~~~~~~--------- 112 (173)
....|++++.|+++.|-+. .+..-...+++|+.|+++.|++... .... ..+++|+.|.++.|.+..
T Consensus 141 ~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~ 220 (505)
T KOG3207|consen 141 YSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHLKQLVLNSCGLSWKDVQWILLT 220 (505)
T ss_pred hhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhhhheEEeccCCCCHHHHHHHHHh
Confidence 3455777777777777655 2223344567777777776655522 1111 234555566666554321
Q ss_pred CC------------------------cceEEEeeceeccccCCCC--C-CCccccceeec-------cccccc-----cC
Q 047314 113 IP------------------------LLKHVCFNEFREMVVNPPV--E-ASLPNLQKLIG-------TEMVCS-----SG 153 (173)
Q Consensus 113 lp------------------------~L~~L~l~~n~~~~~~lp~--~-~~l~~L~~L~l-------~~~~~~-----l~ 153 (173)
+| .|+.|++++|.+. +.++ . +.++.|..|.+ -..|+. ..
T Consensus 221 fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li--~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~ 298 (505)
T KOG3207|consen 221 FPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLI--DFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTH 298 (505)
T ss_pred CCcHHHhhhhcccccceecchhhhhhHHhhccccCCccc--ccccccccccccchhhhhccccCcchhcCCCccchhhhc
Confidence 22 5677777777666 5553 2 66677776666 112222 34
Q ss_pred CCCCcCEEEEeceee
Q 047314 154 RFSHLQFLKLSNIRV 168 (173)
Q Consensus 154 ~l~~L~~L~l~~~~~ 168 (173)
.++.|+.|++.....
T Consensus 299 ~f~kL~~L~i~~N~I 313 (505)
T KOG3207|consen 299 TFPKLEYLNISENNI 313 (505)
T ss_pred ccccceeeecccCcc
Confidence 566777777665443
No 45
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.70 E-value=0.00015 Score=57.97 Aligned_cols=73 Identities=16% Similarity=0.207 Sum_probs=50.5
Q ss_pred ccCCCcccEEEecCcccccchhhhCCCCCCcEEeccC-CcccccCccccCCCCccEEEecCC-CCCCCC-cceEEEeece
Q 047314 48 AKECRLLQVLDLEGVYMALLDSSVGNLIHLRYLDLRK-TWLKKLPSSMGNLFNLQSLDLSST-LVDPIP-LLKHVCFNEF 124 (173)
Q Consensus 48 ~~~l~~L~~L~l~~n~l~~~~~~~~~l~~L~~l~l~~-~~~~~~p~~l~~l~~L~~L~l~~~-~~~~lp-~L~~L~l~~n 124 (173)
+..+.+++.|++++|.++.+|. + ..+|+.|.+++ +.++.+|..+. .+|+.|.+++| .+..+| +|+.|.+..+
T Consensus 48 ~~~~~~l~~L~Is~c~L~sLP~-L--P~sLtsL~Lsnc~nLtsLP~~LP--~nLe~L~Ls~Cs~L~sLP~sLe~L~L~~n 122 (426)
T PRK15386 48 IEEARASGRLYIKDCDIESLPV-L--PNELTEITIENCNNLTTLPGSIP--EGLEKLTVCHCPEISGLPESVRSLEIKGS 122 (426)
T ss_pred HHHhcCCCEEEeCCCCCcccCC-C--CCCCcEEEccCCCCcccCCchhh--hhhhheEccCcccccccccccceEEeCCC
Confidence 4456888899999988887762 1 23588888876 34556665442 46888888887 677777 7777777654
Q ss_pred e
Q 047314 125 R 125 (173)
Q Consensus 125 ~ 125 (173)
.
T Consensus 123 ~ 123 (426)
T PRK15386 123 A 123 (426)
T ss_pred C
Confidence 4
No 46
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=97.66 E-value=7.9e-06 Score=65.69 Aligned_cols=118 Identities=24% Similarity=0.235 Sum_probs=83.2
Q ss_pred CCCcccEEEecCcccccchhhhCCCCCCcEEeccCCcccccCccccCCCCccEEEecCCCCCCCC------cceEEEeec
Q 047314 50 ECRLLQVLDLEGVYMALLDSSVGNLIHLRYLDLRKTWLKKLPSSMGNLFNLQSLDLSSTLVDPIP------LLKHVCFNE 123 (173)
Q Consensus 50 ~l~~L~~L~l~~n~l~~~~~~~~~l~~L~~l~l~~~~~~~~p~~l~~l~~L~~L~l~~~~~~~lp------~L~~L~l~~ 123 (173)
.+..++.+.+..|.++..-..+..+.++..+++..|.+..+...+..+++|+++++++|.|+.+. .|+.|++.+
T Consensus 70 ~l~~l~~l~l~~n~i~~~~~~l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~~i~~l~~l~~L~~L~l~~ 149 (414)
T KOG0531|consen 70 SLTSLKELNLRQNLIAKILNHLSKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKITKLEGLSTLTLLKELNLSG 149 (414)
T ss_pred HhHhHHhhccchhhhhhhhcccccccceeeeeccccchhhcccchhhhhcchheeccccccccccchhhccchhhheecc
Confidence 45667777788887776555577888888888888888877665778888888999988777665 678888888
Q ss_pred eeccccCCCCCCCccccceeec-----cccccc-cCCCCCcCEEEEeceeee
Q 047314 124 FREMVVNPPVEASLPNLQKLIG-----TEMVCS-SGRFSHLQFLKLSNIRVE 169 (173)
Q Consensus 124 n~~~~~~lp~~~~l~~L~~L~l-----~~~~~~-l~~l~~L~~L~l~~~~~~ 169 (173)
|.+. .+.....+++|+.+++ ..+... +..+.+++.+.+.+....
T Consensus 150 N~i~--~~~~~~~l~~L~~l~l~~n~i~~ie~~~~~~~~~l~~l~l~~n~i~ 199 (414)
T KOG0531|consen 150 NLIS--DISGLESLKSLKLLDLSYNRIVDIENDELSELISLEELDLGGNSIR 199 (414)
T ss_pred Ccch--hccCCccchhhhcccCCcchhhhhhhhhhhhccchHHHhccCCchh
Confidence 8887 5554444777777777 111111 356666666666655443
No 47
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.57 E-value=5e-06 Score=56.38 Aligned_cols=63 Identities=16% Similarity=0.168 Sum_probs=32.0
Q ss_pred CcccEEEecCcccccchhhhCCC-CCCcEEeccCCcccccCccccCCCCccEEEecCCCCCCCC
Q 047314 52 RLLQVLDLEGVYMALLDSSVGNL-IHLRYLDLRKTWLKKLPSSMGNLFNLQSLDLSSTLVDPIP 114 (173)
Q Consensus 52 ~~L~~L~l~~n~l~~~~~~~~~l-~~L~~l~l~~~~~~~~p~~l~~l~~L~~L~l~~~~~~~lp 114 (173)
.+|+..++++|.+.++|+.+... +..+++++..|.+..+|..+..++.|+.|++++|.+...|
T Consensus 53 ~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lNl~~N~l~~~p 116 (177)
T KOG4579|consen 53 YELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLNLRFNPLNAEP 116 (177)
T ss_pred ceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhcccccCccccch
Confidence 34444555555555555554432 3455555555555555555555555555555555444443
No 48
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.53 E-value=1.6e-05 Score=53.98 Aligned_cols=74 Identities=18% Similarity=0.185 Sum_probs=36.7
Q ss_pred ccEEEecCcccc---cchhhhCCCCCCcEEeccCCcccccCccccCC-CCccEEEecCCCCCCCC-------cceEEEee
Q 047314 54 LQVLDLEGVYMA---LLDSSVGNLIHLRYLDLRKTWLKKLPSSMGNL-FNLQSLDLSSTLVDPIP-------LLKHVCFN 122 (173)
Q Consensus 54 L~~L~l~~n~l~---~~~~~~~~l~~L~~l~l~~~~~~~~p~~l~~l-~~L~~L~l~~~~~~~lp-------~L~~L~l~ 122 (173)
+..++++.|.+- ..+..+.....|..+++++|.++..|+.+... +.++++++++|.+.++| .|+.++++
T Consensus 29 ~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lNl~ 108 (177)
T KOG4579|consen 29 LHFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLNLR 108 (177)
T ss_pred hhhcccccchhhHHHHHHHHHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhcccc
Confidence 344455555433 22223333444555555555555555555332 34555555555555555 45555555
Q ss_pred ceecc
Q 047314 123 EFREM 127 (173)
Q Consensus 123 ~n~~~ 127 (173)
.|.+.
T Consensus 109 ~N~l~ 113 (177)
T KOG4579|consen 109 FNPLN 113 (177)
T ss_pred cCccc
Confidence 55555
No 49
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.43 E-value=0.00028 Score=50.85 Aligned_cols=113 Identities=24% Similarity=0.320 Sum_probs=72.5
Q ss_pred cEEEecCcccccchhhhCC-CCCCcEEeccCCcccccCccccCCCCccEEEecCCCCCCCC--------cceEEEeecee
Q 047314 55 QVLDLEGVYMALLDSSVGN-LIHLRYLDLRKTWLKKLPSSMGNLFNLQSLDLSSTLVDPIP--------LLKHVCFNEFR 125 (173)
Q Consensus 55 ~~L~l~~n~l~~~~~~~~~-l~~L~~l~l~~~~~~~~p~~l~~l~~L~~L~l~~~~~~~lp--------~L~~L~l~~n~ 125 (173)
+.+++.+.++...-. ++- +.+.-.++++.|.+..++ .+..++.|.+|.+++|+|..+. .|..|.+.+|+
T Consensus 22 ~e~~LR~lkip~ien-lg~~~d~~d~iDLtdNdl~~l~-~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNs 99 (233)
T KOG1644|consen 22 RELDLRGLKIPVIEN-LGATLDQFDAIDLTDNDLRKLD-NLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNS 99 (233)
T ss_pred cccccccccccchhh-ccccccccceecccccchhhcc-cCCCccccceEEecCCcceeeccchhhhccccceEEecCcc
Confidence 445566655532211 221 244566778777766553 4666778888888888776654 68888888888
Q ss_pred ccccCCCC--C-CCccccceeec-------cc--cccccCCCCCcCEEEEeceeeecc
Q 047314 126 EMVVNPPV--E-ASLPNLQKLIG-------TE--MVCSSGRFSHLQFLKLSNIRVEER 171 (173)
Q Consensus 126 ~~~~~lp~--~-~~l~~L~~L~l-------~~--~~~~l~~l~~L~~L~l~~~~~~~~ 171 (173)
+. .+.. . ..+|.|++|.+ .. .--.+..+|+|+.||+..++.+++
T Consensus 100 i~--~l~dl~pLa~~p~L~~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~kVt~~ER 155 (233)
T KOG1644|consen 100 IQ--ELGDLDPLASCPKLEYLTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQKVTRKER 155 (233)
T ss_pred hh--hhhhcchhccCCccceeeecCCchhcccCceeEEEEecCcceEeehhhhhHHHH
Confidence 77 4433 3 67788888877 11 111267788888888888776654
No 50
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.30 E-value=1.1e-05 Score=67.80 Aligned_cols=98 Identities=22% Similarity=0.132 Sum_probs=71.9
Q ss_pred ccccCCCcccEEEecCcccccchhhhCCCCCCcEEeccCCcccccCc-cccCCCCccEEEecCCCCCCCC------cceE
Q 047314 46 FLAKECRLLQVLDLEGVYMALLDSSVGNLIHLRYLDLRKTWLKKLPS-SMGNLFNLQSLDLSSTLVDPIP------LLKH 118 (173)
Q Consensus 46 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~l~~L~~l~l~~~~~~~~p~-~l~~l~~L~~L~l~~~~~~~lp------~L~~ 118 (173)
..+.-++.++.|+++.|+++++. .+..+++|++||++.|.+..+|. +...+. |+.|.+.+|.++.+- +|+.
T Consensus 181 ~SLqll~ale~LnLshNk~~~v~-~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~-L~~L~lrnN~l~tL~gie~LksL~~ 258 (1096)
T KOG1859|consen 181 ESLQLLPALESLNLSHNKFTKVD-NLRRLPKLKHLDLSYNCLRHVPQLSMVGCK-LQLLNLRNNALTTLRGIENLKSLYG 258 (1096)
T ss_pred HHHHHHHHhhhhccchhhhhhhH-HHHhcccccccccccchhccccccchhhhh-heeeeecccHHHhhhhHHhhhhhhc
Confidence 45666788899999999988765 67888999999999998888874 233444 899999998555443 8888
Q ss_pred EEeeceeccccCCCCC-CCccccceeec
Q 047314 119 VCFNEFREMVVNPPVE-ASLPNLQKLIG 145 (173)
Q Consensus 119 L~l~~n~~~~~~lp~~-~~l~~L~~L~l 145 (173)
|++++|-+.+.+-... ..+..|+.|.+
T Consensus 259 LDlsyNll~~hseL~pLwsLs~L~~L~L 286 (1096)
T KOG1859|consen 259 LDLSYNLLSEHSELEPLWSLSSLIVLWL 286 (1096)
T ss_pred cchhHhhhhcchhhhHHHHHHHHHHHhh
Confidence 9999988873111222 56667777776
No 51
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=97.20 E-value=0.0004 Score=52.48 Aligned_cols=124 Identities=15% Similarity=0.067 Sum_probs=91.8
Q ss_pred ccccCCCcccEEEecCcccc-cchhh----hCCCCCCcEEeccCCcccccC--------------ccccCCCCccEEEec
Q 047314 46 FLAKECRLLQVLDLEGVYMA-LLDSS----VGNLIHLRYLDLRKTWLKKLP--------------SSMGNLFNLQSLDLS 106 (173)
Q Consensus 46 ~~~~~l~~L~~L~l~~n~l~-~~~~~----~~~l~~L~~l~l~~~~~~~~p--------------~~l~~l~~L~~L~l~ 106 (173)
+++.+|++|+..+++.|.+. ..|+. +.+.+.|..|.+.+|++..+. +....-|.|++++..
T Consensus 86 ~aLlkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicg 165 (388)
T COG5238 86 KALLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICG 165 (388)
T ss_pred HHHhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEec
Confidence 88899999999999999987 55554 456788999999999765221 122346789999999
Q ss_pred CCCCCCCC------------cceEEEeeceeccccCCC----CC-CCccccceeec----------cccccccCCCCCcC
Q 047314 107 STLVDPIP------------LLKHVCFNEFREMVVNPP----VE-ASLPNLQKLIG----------TEMVCSSGRFSHLQ 159 (173)
Q Consensus 107 ~~~~~~lp------------~L~~L~l~~n~~~~~~lp----~~-~~l~~L~~L~l----------~~~~~~l~~l~~L~ 159 (173)
.|++...| .|+.+.+..|.++..-+. .. ..+.+|+.||+ ..+...+..++.|+
T Consensus 166 rNRlengs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lr 245 (388)
T COG5238 166 RNRLENGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLR 245 (388)
T ss_pred cchhccCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhh
Confidence 99877766 688888999988842111 12 46678999998 23455577888899
Q ss_pred EEEEeceeee
Q 047314 160 FLKLSNIRVE 169 (173)
Q Consensus 160 ~L~l~~~~~~ 169 (173)
.|.+.+|=..
T Consensus 246 EL~lnDClls 255 (388)
T COG5238 246 ELRLNDCLLS 255 (388)
T ss_pred hccccchhhc
Confidence 9988887543
No 52
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=97.16 E-value=8e-06 Score=62.10 Aligned_cols=63 Identities=21% Similarity=0.251 Sum_probs=34.7
Q ss_pred ccccCCCcccEEEecCcccc-cchhhhCCCCCCcEEeccCC-cccccC--ccccCCCCccEEEecCC
Q 047314 46 FLAKECRLLQVLDLEGVYMA-LLDSSVGNLIHLRYLDLRKT-WLKKLP--SSMGNLFNLQSLDLSST 108 (173)
Q Consensus 46 ~~~~~l~~L~~L~l~~n~l~-~~~~~~~~l~~L~~l~l~~~-~~~~~p--~~l~~l~~L~~L~l~~~ 108 (173)
..++.+.+|+.|.+.|+.+. .+-..+..-.+|..++++.+ ++++.. --+..|..|..|++++|
T Consensus 204 ~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc 270 (419)
T KOG2120|consen 204 GILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWC 270 (419)
T ss_pred HHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhcCchHh
Confidence 44555666666666666655 34444555556666666653 244221 22355666666666666
No 53
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.05 E-value=0.00058 Score=58.33 Aligned_cols=76 Identities=21% Similarity=0.232 Sum_probs=40.2
Q ss_pred cCCCcccEEEecCcccc--cchhhhCCCCCCcEEeccCCcccccCccccCCCCccEEEecCCCCCCCC---------cce
Q 047314 49 KECRLLQVLDLEGVYMA--LLDSSVGNLIHLRYLDLRKTWLKKLPSSMGNLFNLQSLDLSSTLVDPIP---------LLK 117 (173)
Q Consensus 49 ~~l~~L~~L~l~~n~l~--~~~~~~~~l~~L~~l~l~~~~~~~~p~~l~~l~~L~~L~l~~~~~~~lp---------~L~ 117 (173)
.-+|.|+.|.+.+-.+. ++..-..++++|..||++++.++.+ .+++.+++|+.|.+.+-.+.... +|+
T Consensus 145 ~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl-~GIS~LknLq~L~mrnLe~e~~~~l~~LF~L~~L~ 223 (699)
T KOG3665|consen 145 TMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL-SGISRLKNLQVLSMRNLEFESYQDLIDLFNLKKLR 223 (699)
T ss_pred hhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc-HHHhccccHHHHhccCCCCCchhhHHHHhcccCCC
Confidence 34566666666665543 2222233556666666666665544 45556666666655544333221 556
Q ss_pred EEEeecee
Q 047314 118 HVCFNEFR 125 (173)
Q Consensus 118 ~L~l~~n~ 125 (173)
+|+++...
T Consensus 224 vLDIS~~~ 231 (699)
T KOG3665|consen 224 VLDISRDK 231 (699)
T ss_pred eeeccccc
Confidence 66666543
No 54
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.98 E-value=2.1e-05 Score=59.37 Aligned_cols=77 Identities=17% Similarity=0.195 Sum_probs=44.1
Q ss_pred CCCcccEEEecCcccccchhhhCCCCCCcEEeccCCcccccCccccCCCCccEEEecCCCCCCC---------CcceEEE
Q 047314 50 ECRLLQVLDLEGVYMALLDSSVGNLIHLRYLDLRKTWLKKLPSSMGNLFNLQSLDLSSTLVDPI---------PLLKHVC 120 (173)
Q Consensus 50 ~l~~L~~L~l~~n~l~~~~~~~~~l~~L~~l~l~~~~~~~~p~~l~~l~~L~~L~l~~~~~~~l---------p~L~~L~ 120 (173)
.+.+++.|+..|+.++++ .-...|+.|..|.++-|.|+.+. .+..|+.|+.|.+..|.|..+ |+|+.|+
T Consensus 17 dl~~vkKLNcwg~~L~DI-sic~kMp~lEVLsLSvNkIssL~-pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LW 94 (388)
T KOG2123|consen 17 DLENVKKLNCWGCGLDDI-SICEKMPLLEVLSLSVNKISSLA-PLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLW 94 (388)
T ss_pred HHHHhhhhcccCCCccHH-HHHHhcccceeEEeeccccccch-hHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHh
Confidence 355566677777766643 11235666777777777666552 245566666666666644433 2555666
Q ss_pred eeceeccc
Q 047314 121 FNEFREMV 128 (173)
Q Consensus 121 l~~n~~~~ 128 (173)
+..|...+
T Consensus 95 L~ENPCc~ 102 (388)
T KOG2123|consen 95 LDENPCCG 102 (388)
T ss_pred hccCCccc
Confidence 65554443
No 55
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.92 E-value=0.00061 Score=52.11 Aligned_cols=63 Identities=25% Similarity=0.212 Sum_probs=29.6
Q ss_pred ccccCCCcccEEEecCcccccchhhh-CCCCCCcEEeccCCccc--ccCccccCCCCccEEEecCC
Q 047314 46 FLAKECRLLQVLDLEGVYMALLDSSV-GNLIHLRYLDLRKTWLK--KLPSSMGNLFNLQSLDLSST 108 (173)
Q Consensus 46 ~~~~~l~~L~~L~l~~n~l~~~~~~~-~~l~~L~~l~l~~~~~~--~~p~~l~~l~~L~~L~l~~~ 108 (173)
.++..|+.+++|+++.|++.....+. ..+.+|+.+-+-++.+. ..-..+..+|.++.+.++.|
T Consensus 91 ~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N 156 (418)
T KOG2982|consen 91 AILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVTELHMSDN 156 (418)
T ss_pred HHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhhhhhhhccc
Confidence 34455555666666665554222232 23445555555444333 22223344555555555554
No 56
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=96.87 E-value=0.00079 Score=30.76 Aligned_cols=21 Identities=38% Similarity=0.471 Sum_probs=13.6
Q ss_pred cccEEEecCcccccchhhhCC
Q 047314 53 LLQVLDLEGVYMALLDSSVGN 73 (173)
Q Consensus 53 ~L~~L~l~~n~l~~~~~~~~~ 73 (173)
+|++|++++|.++.+|+++++
T Consensus 1 ~L~~Ldls~n~l~~ip~~~~~ 21 (22)
T PF00560_consen 1 NLEYLDLSGNNLTSIPSSFSN 21 (22)
T ss_dssp TESEEEETSSEESEEGTTTTT
T ss_pred CccEEECCCCcCEeCChhhcC
Confidence 366777777777766666543
No 57
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.71 E-value=0.00059 Score=50.84 Aligned_cols=79 Identities=22% Similarity=0.231 Sum_probs=44.8
Q ss_pred ccCCCcccEEEecCcccccchhhhCCCCCCcEEeccCC--ccc-ccCccccCCCCccEEEecCCCCCCCC---------c
Q 047314 48 AKECRLLQVLDLEGVYMALLDSSVGNLIHLRYLDLRKT--WLK-KLPSSMGNLFNLQSLDLSSTLVDPIP---------L 115 (173)
Q Consensus 48 ~~~l~~L~~L~l~~n~l~~~~~~~~~l~~L~~l~l~~~--~~~-~~p~~l~~l~~L~~L~l~~~~~~~lp---------~ 115 (173)
...+..+..+.+.+..++.+ ..+..|++|+.|.++.| .+. .++.-.-.+++|+++++++|.+..+. +
T Consensus 39 ~d~~~~le~ls~~n~gltt~-~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~n 117 (260)
T KOG2739|consen 39 TDEFVELELLSVINVGLTTL-TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELEN 117 (260)
T ss_pred cccccchhhhhhhccceeec-ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcc
Confidence 34445555566666555532 23455667777777766 444 44444445577777777777554322 4
Q ss_pred ceEEEeeceecc
Q 047314 116 LKHVCFNEFREM 127 (173)
Q Consensus 116 L~~L~l~~n~~~ 127 (173)
|..|.++.|...
T Consensus 118 L~~Ldl~n~~~~ 129 (260)
T KOG2739|consen 118 LKSLDLFNCSVT 129 (260)
T ss_pred hhhhhcccCCcc
Confidence 556666665554
No 58
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=96.58 E-value=0.00049 Score=53.35 Aligned_cols=123 Identities=17% Similarity=0.129 Sum_probs=81.9
Q ss_pred cccCCCcccEEEecCcccc-----cchhhhCCCCCCcEEeccCCccc-----ccCccccCCCCccEEEecCCCCCC----
Q 047314 47 LAKECRLLQVLDLEGVYMA-----LLDSSVGNLIHLRYLDLRKTWLK-----KLPSSMGNLFNLQSLDLSSTLVDP---- 112 (173)
Q Consensus 47 ~~~~l~~L~~L~l~~n~l~-----~~~~~~~~l~~L~~l~l~~~~~~-----~~p~~l~~l~~L~~L~l~~~~~~~---- 112 (173)
-.+.-++|+++....|.+. .+...+..++.|..+.++.|.|. .+...+..+++|+.|++.+|.++.
T Consensus 152 k~~~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~ 231 (382)
T KOG1909|consen 152 KAASKPKLRVFICGRNRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSV 231 (382)
T ss_pred ccCCCcceEEEEeeccccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHH
Confidence 3455677888888888755 23344566778888888777665 123456778888888888884432
Q ss_pred --------CCcceEEEeeceeccccC---CC-CC-CCccccceeec----------cccccccCCCCCcCEEEEeceeee
Q 047314 113 --------IPLLKHVCFNEFREMVVN---PP-VE-ASLPNLQKLIG----------TEMVCSSGRFSHLQFLKLSNIRVE 169 (173)
Q Consensus 113 --------lp~L~~L~l~~n~~~~~~---lp-~~-~~l~~L~~L~l----------~~~~~~l~~l~~L~~L~l~~~~~~ 169 (173)
+|+|+.+++++|.+...- +. .. ...|+|+.+.+ ..+...+...|.|.+|++.+++..
T Consensus 232 ~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l~ 311 (382)
T KOG1909|consen 232 ALAKALSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRLG 311 (382)
T ss_pred HHHHHhcccchheeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCccccc
Confidence 336888888888776311 11 12 45678888887 223334666888899999888874
No 59
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.36 E-value=0.0012 Score=50.51 Aligned_cols=79 Identities=23% Similarity=0.196 Sum_probs=51.4
Q ss_pred cCCCcccEEEecCcccccchh---hhCCCCCCcEEeccCCcccccCccc-cCCCCccEEEecCCCC---------CCCCc
Q 047314 49 KECRLLQVLDLEGVYMALLDS---SVGNLIHLRYLDLRKTWLKKLPSSM-GNLFNLQSLDLSSTLV---------DPIPL 115 (173)
Q Consensus 49 ~~l~~L~~L~l~~n~l~~~~~---~~~~l~~L~~l~l~~~~~~~~p~~l-~~l~~L~~L~l~~~~~---------~~lp~ 115 (173)
..+..++.+++.+|.|+++.+ -+.+|+.|++|+++.|++..--..+ .+..+|++|.+.+..+ ..+|.
T Consensus 68 ~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~ 147 (418)
T KOG2982|consen 68 SSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPK 147 (418)
T ss_pred HHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchh
Confidence 346678888888888874433 2457888888888888766322333 3567788888877632 23445
Q ss_pred ceEEEeeceecc
Q 047314 116 LKHVCFNEFREM 127 (173)
Q Consensus 116 L~~L~l~~n~~~ 127 (173)
++.|+++.|+++
T Consensus 148 vtelHmS~N~~r 159 (418)
T KOG2982|consen 148 VTELHMSDNSLR 159 (418)
T ss_pred hhhhhhccchhh
Confidence 666666666544
No 60
>PRK15386 type III secretion protein GogB; Provisional
Probab=96.28 E-value=0.009 Score=47.97 Aligned_cols=58 Identities=12% Similarity=0.168 Sum_probs=43.1
Q ss_pred hCCCCCCcEEeccCCcccccCccccCCCCccEEEecCC-CCCCCC-----cceEEEeece-eccccCCCC
Q 047314 71 VGNLIHLRYLDLRKTWLKKLPSSMGNLFNLQSLDLSST-LVDPIP-----LLKHVCFNEF-REMVVNPPV 133 (173)
Q Consensus 71 ~~~l~~L~~l~l~~~~~~~~p~~l~~l~~L~~L~l~~~-~~~~lp-----~L~~L~l~~n-~~~~~~lp~ 133 (173)
+..+.++..|+++++.++.+|. + ..+|+.|.+++| .+..+| +|+.|.+++| .+. .+|.
T Consensus 48 ~~~~~~l~~L~Is~c~L~sLP~-L--P~sLtsL~Lsnc~nLtsLP~~LP~nLe~L~Ls~Cs~L~--sLP~ 112 (426)
T PRK15386 48 IEEARASGRLYIKDCDIESLPV-L--PNELTEITIENCNNLTTLPGSIPEGLEKLTVCHCPEIS--GLPE 112 (426)
T ss_pred HHHhcCCCEEEeCCCCCcccCC-C--CCCCcEEEccCCCCcccCCchhhhhhhheEccCccccc--cccc
Confidence 3446889999999998888882 2 246999999886 455554 8999999988 444 5554
No 61
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.13 E-value=0.00018 Score=54.45 Aligned_cols=60 Identities=28% Similarity=0.345 Sum_probs=25.2
Q ss_pred ccCCCcccEEEecCcccccchhhhCCCCCCcEEeccCCcccccC--ccccCCCCccEEEecCC
Q 047314 48 AKECRLLQVLDLEGVYMALLDSSVGNLIHLRYLDLRKTWLKKLP--SSMGNLFNLQSLDLSST 108 (173)
Q Consensus 48 ~~~l~~L~~L~l~~n~l~~~~~~~~~l~~L~~l~l~~~~~~~~p--~~l~~l~~L~~L~l~~~ 108 (173)
..+|+.|++|.|+-|.|+.+ ..+..++.|+.|+++.|.|..+- ..+.++++|++|.+..|
T Consensus 37 c~kMp~lEVLsLSvNkIssL-~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL~EN 98 (388)
T KOG2123|consen 37 CEKMPLLEVLSLSVNKISSL-APLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWLDEN 98 (388)
T ss_pred HHhcccceeEEeeccccccc-hhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhhccC
Confidence 34444444444444444432 22334444444444444444221 22344444444444443
No 62
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=96.13 E-value=0.0027 Score=28.92 Aligned_cols=21 Identities=48% Similarity=0.738 Sum_probs=16.5
Q ss_pred CCcEEeccCCcccccCccccC
Q 047314 76 HLRYLDLRKTWLKKLPSSMGN 96 (173)
Q Consensus 76 ~L~~l~l~~~~~~~~p~~l~~ 96 (173)
+|++|++++|.++.+|++++.
T Consensus 1 ~L~~Ldls~n~l~~ip~~~~~ 21 (22)
T PF00560_consen 1 NLEYLDLSGNNLTSIPSSFSN 21 (22)
T ss_dssp TESEEEETSSEESEEGTTTTT
T ss_pred CccEEECCCCcCEeCChhhcC
Confidence 478889998888888877654
No 63
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.01 E-value=0.0046 Score=46.17 Aligned_cols=69 Identities=25% Similarity=0.223 Sum_probs=52.8
Q ss_pred ccccCCCcccEEEecCc--ccc-cchhhhCCCCCCcEEeccCCccccc--CccccCCCCccEEEecCCCCCCCC
Q 047314 46 FLAKECRLLQVLDLEGV--YMA-LLDSSVGNLIHLRYLDLRKTWLKKL--PSSMGNLFNLQSLDLSSTLVDPIP 114 (173)
Q Consensus 46 ~~~~~l~~L~~L~l~~n--~l~-~~~~~~~~l~~L~~l~l~~~~~~~~--p~~l~~l~~L~~L~l~~~~~~~lp 114 (173)
..+..+++|+.|.++.| .+. .++......++|+++.+++|++..+ -..+..+.+|..|++.+|....+.
T Consensus 59 ~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~Ldl~n~~~~~l~ 132 (260)
T KOG2739|consen 59 TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLKSLDLFNCSVTNLD 132 (260)
T ss_pred ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcchhhhhcccCCccccc
Confidence 66788889999999999 555 5555566679999999999998842 233566778889999998655543
No 64
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=95.91 E-value=0.00025 Score=54.15 Aligned_cols=116 Identities=22% Similarity=0.157 Sum_probs=73.9
Q ss_pred cccEEEecCcccc--cchhhhCCCCCCcEEeccCCccc-ccCccccCCCCccEEEecCC-CCCCCC---------cceEE
Q 047314 53 LLQVLDLEGVYMA--LLDSSVGNLIHLRYLDLRKTWLK-KLPSSMGNLFNLQSLDLSST-LVDPIP---------LLKHV 119 (173)
Q Consensus 53 ~L~~L~l~~n~l~--~~~~~~~~l~~L~~l~l~~~~~~-~~p~~l~~l~~L~~L~l~~~-~~~~lp---------~L~~L 119 (173)
.++.+|++...|+ .+..-+..+.+|+.+.+.++++. .+...+.+-..|+.++++.+ .+.... .|..|
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~L 265 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDEL 265 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhc
Confidence 4888999999888 44455667788999999998887 55666777788999999887 343322 34444
Q ss_pred Eeeceecccc---------------------------C-CCCC-CCccccceeec-------cccccccCCCCCcCEEEE
Q 047314 120 CFNEFREMVV---------------------------N-PPVE-ASLPNLQKLIG-------TEMVCSSGRFSHLQFLKL 163 (173)
Q Consensus 120 ~l~~n~~~~~---------------------------~-lp~~-~~l~~L~~L~l-------~~~~~~l~~l~~L~~L~l 163 (173)
+++.|..... . +... ..+|+|.+||+ .....++..++.|++|.+
T Consensus 266 NlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSl 345 (419)
T KOG2120|consen 266 NLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSL 345 (419)
T ss_pred CchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeeeh
Confidence 4443322210 1 1112 55666666666 233445667777777777
Q ss_pred eceee
Q 047314 164 SNIRV 168 (173)
Q Consensus 164 ~~~~~ 168 (173)
+.|..
T Consensus 346 sRCY~ 350 (419)
T KOG2120|consen 346 SRCYD 350 (419)
T ss_pred hhhcC
Confidence 66643
No 65
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=95.36 E-value=0.012 Score=24.96 Aligned_cols=16 Identities=31% Similarity=0.343 Sum_probs=7.1
Q ss_pred cccEEEecCcccccch
Q 047314 53 LLQVLDLEGVYMALLD 68 (173)
Q Consensus 53 ~L~~L~l~~n~l~~~~ 68 (173)
+|+.|++++|.++.+|
T Consensus 2 ~L~~L~l~~n~L~~lP 17 (17)
T PF13504_consen 2 NLRTLDLSNNRLTSLP 17 (17)
T ss_dssp T-SEEEETSS--SSE-
T ss_pred ccCEEECCCCCCCCCc
Confidence 4566666666655443
No 66
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=93.98 E-value=0.049 Score=25.59 Aligned_cols=19 Identities=26% Similarity=0.265 Sum_probs=11.1
Q ss_pred CcccEEEecCcccccchhh
Q 047314 52 RLLQVLDLEGVYMALLDSS 70 (173)
Q Consensus 52 ~~L~~L~l~~n~l~~~~~~ 70 (173)
++|+.|++++|.++.+|+.
T Consensus 2 ~~L~~L~L~~N~l~~lp~~ 20 (26)
T smart00370 2 PNLRELDLSNNQLSSLPPG 20 (26)
T ss_pred CCCCEEECCCCcCCcCCHH
Confidence 4556666666666655554
No 67
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=93.98 E-value=0.049 Score=25.59 Aligned_cols=19 Identities=26% Similarity=0.265 Sum_probs=11.1
Q ss_pred CcccEEEecCcccccchhh
Q 047314 52 RLLQVLDLEGVYMALLDSS 70 (173)
Q Consensus 52 ~~L~~L~l~~n~l~~~~~~ 70 (173)
++|+.|++++|.++.+|+.
T Consensus 2 ~~L~~L~L~~N~l~~lp~~ 20 (26)
T smart00369 2 PNLRELDLSNNQLSSLPPG 20 (26)
T ss_pred CCCCEEECCCCcCCcCCHH
Confidence 4556666666666655554
No 68
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=93.92 E-value=0.24 Score=32.56 Aligned_cols=76 Identities=14% Similarity=0.270 Sum_probs=39.5
Q ss_pred cccCCCcccEEEecCcccccchhh-hCCCCCCcEEeccCCcccccC-ccccCCCCccEEEecCCC--C-----CCCCcce
Q 047314 47 LAKECRLLQVLDLEGVYMALLDSS-VGNLIHLRYLDLRKTWLKKLP-SSMGNLFNLQSLDLSSTL--V-----DPIPLLK 117 (173)
Q Consensus 47 ~~~~l~~L~~L~l~~n~l~~~~~~-~~~l~~L~~l~l~~~~~~~~p-~~l~~l~~L~~L~l~~~~--~-----~~lp~L~ 117 (173)
+|.++.+|+.+.+.. .+..++.. +....+++.+.+..+ +..++ ..+..+.+++.+.+..+. + ...+.++
T Consensus 7 ~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~~~~~i~~~~F~~~~~l~ 84 (129)
T PF13306_consen 7 AFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPNNLKSIGDNAFSNCTNLK 84 (129)
T ss_dssp TTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETSTT-EE-TTTTTT-TTEC
T ss_pred HHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeeccccccccccccccccccccccccccccc
Confidence 577788888888774 45544443 566777888888765 55554 345667678888876531 1 1122666
Q ss_pred EEEeece
Q 047314 118 HVCFNEF 124 (173)
Q Consensus 118 ~L~l~~n 124 (173)
.+.+..+
T Consensus 85 ~i~~~~~ 91 (129)
T PF13306_consen 85 NIDIPSN 91 (129)
T ss_dssp EEEETTT
T ss_pred ccccCcc
Confidence 6666543
No 69
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=93.57 E-value=0.053 Score=41.37 Aligned_cols=78 Identities=24% Similarity=0.256 Sum_probs=42.2
Q ss_pred CCCcccEEEecCcccc-c----chhhhCCCCCCcEEeccCCc---cc-ccC-------ccccCCCCccEEEecCCCCCC-
Q 047314 50 ECRLLQVLDLEGVYMA-L----LDSSVGNLIHLRYLDLRKTW---LK-KLP-------SSMGNLFNLQSLDLSSTLVDP- 112 (173)
Q Consensus 50 ~l~~L~~L~l~~n~l~-~----~~~~~~~l~~L~~l~l~~~~---~~-~~p-------~~l~~l~~L~~L~l~~~~~~~- 112 (173)
.+..++.++++||.|. . +...+.+-.+|+..+++.-. .. ++| +.+-+|+.|+.+++|+|.++.
T Consensus 28 ~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~ 107 (388)
T COG5238 28 MMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSE 107 (388)
T ss_pred hhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCcc
Confidence 3566677777777765 2 22333444555555554321 11 222 334556777777777774432
Q ss_pred CC-----------cceEEEeeceecc
Q 047314 113 IP-----------LLKHVCFNEFREM 127 (173)
Q Consensus 113 lp-----------~L~~L~l~~n~~~ 127 (173)
.| .|.||.+++|.+.
T Consensus 108 ~~e~L~d~is~~t~l~HL~l~NnGlG 133 (388)
T COG5238 108 FPEELGDLISSSTDLVHLKLNNNGLG 133 (388)
T ss_pred cchHHHHHHhcCCCceeEEeecCCCC
Confidence 22 5667777766554
No 70
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=90.99 E-value=0.61 Score=30.59 Aligned_cols=61 Identities=18% Similarity=0.322 Sum_probs=39.6
Q ss_pred ccccCCCcccEEEecCcccccchhh-hCCCCCCcEEeccCCcccccC-ccccCCCCccEEEecCC
Q 047314 46 FLAKECRLLQVLDLEGVYMALLDSS-VGNLIHLRYLDLRKTWLKKLP-SSMGNLFNLQSLDLSST 108 (173)
Q Consensus 46 ~~~~~l~~L~~L~l~~n~l~~~~~~-~~~l~~L~~l~l~~~~~~~~p-~~l~~l~~L~~L~l~~~ 108 (173)
..|..+++++.+.+..+ +..++.. +.+.+.++.+.+.. .+..++ ..+..+.+++.+.+..+
T Consensus 29 ~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~~i~~~~~ 91 (129)
T PF13306_consen 29 NAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNLKNIDIPSN 91 (129)
T ss_dssp TTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTECEEEETTT
T ss_pred hhccccccccccccccc-ccccceeeeecccccccccccc-cccccccccccccccccccccCcc
Confidence 46888989999999875 6655444 66677899999976 455554 45667899999998764
No 71
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=87.16 E-value=0.19 Score=23.01 Aligned_cols=14 Identities=29% Similarity=0.342 Sum_probs=8.1
Q ss_pred CcccEEEecCcccc
Q 047314 52 RLLQVLDLEGVYMA 65 (173)
Q Consensus 52 ~~L~~L~l~~n~l~ 65 (173)
++|+.|++++|.++
T Consensus 2 ~~L~~L~l~~n~i~ 15 (24)
T PF13516_consen 2 PNLETLDLSNNQIT 15 (24)
T ss_dssp TT-SEEE-TSSBEH
T ss_pred CCCCEEEccCCcCC
Confidence 56677777777665
No 72
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=86.55 E-value=0.011 Score=44.01 Aligned_cols=67 Identities=22% Similarity=0.198 Sum_probs=37.9
Q ss_pred ccCCCcccEEEecCcccccchhhhCCCCCCcEEeccCCcccccCccccCCCCccEEEecCCCCCCCC
Q 047314 48 AKECRLLQVLDLEGVYMALLDSSVGNLIHLRYLDLRKTWLKKLPSSMGNLFNLQSLDLSSTLVDPIP 114 (173)
Q Consensus 48 ~~~l~~L~~L~l~~n~l~~~~~~~~~l~~L~~l~l~~~~~~~~p~~l~~l~~L~~L~l~~~~~~~lp 114 (173)
+..++..++||++.|.+..+-..+.-++.+..++++.|++..+|..++++..+..+++..|.....|
T Consensus 38 i~~~kr~tvld~~s~r~vn~~~n~s~~t~~~rl~~sknq~~~~~~d~~q~~e~~~~~~~~n~~~~~p 104 (326)
T KOG0473|consen 38 IASFKRVTVLDLSSNRLVNLGKNFSILTRLVRLDLSKNQIKFLPKDAKQQRETVNAASHKNNHSQQP 104 (326)
T ss_pred hhccceeeeehhhhhHHHhhccchHHHHHHHHHhccHhhHhhChhhHHHHHHHHHHHhhccchhhCC
Confidence 3445566666666666554444455555555566666666666666666655555555555444444
No 73
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=83.24 E-value=0.29 Score=22.90 Aligned_cols=18 Identities=22% Similarity=0.134 Sum_probs=13.7
Q ss_pred CCCcCEEEEeceeeeccC
Q 047314 155 FSHLQFLKLSNIRVEERS 172 (173)
Q Consensus 155 l~~L~~L~l~~~~~~~~~ 172 (173)
+++|++|+++.|...++.
T Consensus 1 c~~L~~L~l~~C~~itD~ 18 (26)
T smart00367 1 CPNLRELDLSGCTNITDE 18 (26)
T ss_pred CCCCCEeCCCCCCCcCHH
Confidence 467889999988876554
No 74
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=82.00 E-value=0.84 Score=21.63 Aligned_cols=17 Identities=18% Similarity=0.217 Sum_probs=8.6
Q ss_pred cccEEEecCcccccchh
Q 047314 53 LLQVLDLEGVYMALLDS 69 (173)
Q Consensus 53 ~L~~L~l~~n~l~~~~~ 69 (173)
+|+.|++++|+++.+|.
T Consensus 3 ~L~~L~vs~N~Lt~LPe 19 (26)
T smart00364 3 SLKELNVSNNQLTSLPE 19 (26)
T ss_pred ccceeecCCCccccCcc
Confidence 34555555555554443
No 75
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=78.63 E-value=1.7 Score=20.53 Aligned_cols=16 Identities=44% Similarity=0.584 Sum_probs=8.4
Q ss_pred CCccEEEecCCCCCCC
Q 047314 98 FNLQSLDLSSTLVDPI 113 (173)
Q Consensus 98 ~~L~~L~l~~~~~~~l 113 (173)
.+|+.|++++|.|..+
T Consensus 2 ~~L~~L~L~~NkI~~I 17 (26)
T smart00365 2 TNLEELDLSQNKIKKI 17 (26)
T ss_pred CccCEEECCCCcccee
Confidence 3455555555555443
No 76
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=76.92 E-value=0.22 Score=40.26 Aligned_cols=34 Identities=35% Similarity=0.442 Sum_probs=14.4
Q ss_pred CCcccEEEecCcc-ccc--chhhhCCCCCCcEEeccC
Q 047314 51 CRLLQVLDLEGVY-MAL--LDSSVGNLIHLRYLDLRK 84 (173)
Q Consensus 51 l~~L~~L~l~~n~-l~~--~~~~~~~l~~L~~l~l~~ 84 (173)
++.++.+.+.++. ++. +-......+.|+.+++++
T Consensus 187 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~ 223 (482)
T KOG1947|consen 187 CPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSG 223 (482)
T ss_pred CchhhHhhhcccccCChhhHHHHHhhCchhheecccC
Confidence 4445555444442 221 122233445555555543
No 77
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=74.03 E-value=0.1 Score=39.01 Aligned_cols=64 Identities=14% Similarity=-0.058 Sum_probs=55.0
Q ss_pred ccccCCCcccEEEecCcccccchhhhCCCCCCcEEeccCCcccccCccccCCCCccEEEecCCC
Q 047314 46 FLAKECRLLQVLDLEGVYMALLDSSVGNLIHLRYLDLRKTWLKKLPSSMGNLFNLQSLDLSSTL 109 (173)
Q Consensus 46 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~l~~L~~l~l~~~~~~~~p~~l~~l~~L~~L~l~~~~ 109 (173)
..|..+..+..|+++.|.+..+|+.+..+..+..++...|..+..|.++++.+.++.++...+.
T Consensus 59 ~n~s~~t~~~rl~~sknq~~~~~~d~~q~~e~~~~~~~~n~~~~~p~s~~k~~~~k~~e~k~~~ 122 (326)
T KOG0473|consen 59 KNFSILTRLVRLDLSKNQIKFLPKDAKQQRETVNAASHKNNHSQQPKSQKKEPHPKKNEQKKTE 122 (326)
T ss_pred cchHHHHHHHHHhccHhhHhhChhhHHHHHHHHHHHhhccchhhCCccccccCCcchhhhccCc
Confidence 4566677788899999999999999988888888888888888999999999999988888774
No 78
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=72.24 E-value=0.36 Score=35.14 Aligned_cols=79 Identities=16% Similarity=0.158 Sum_probs=47.5
Q ss_pred cchhhhCCCCCCcEEeccCCccc-ccCccccCCCCccEEEecCCC-C--------CC-CCcceEEEeece-eccccCCCC
Q 047314 66 LLDSSVGNLIHLRYLDLRKTWLK-KLPSSMGNLFNLQSLDLSSTL-V--------DP-IPLLKHVCFNEF-REMVVNPPV 133 (173)
Q Consensus 66 ~~~~~~~~l~~L~~l~l~~~~~~-~~p~~l~~l~~L~~L~l~~~~-~--------~~-lp~L~~L~l~~n-~~~~~~lp~ 133 (173)
..|.....-..++.++.++..|. +--..+..++.++.|.+.+|. + .. .|+|+.|++++| +|+. .-..
T Consensus 92 ~lp~~~~~~~~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~-~GL~ 170 (221)
T KOG3864|consen 92 SLPGPNADNVKIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITD-GGLA 170 (221)
T ss_pred cCCCCCCCcceEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeech-hHHH
Confidence 33443333345777888887777 334667778888888877772 2 12 228888888876 3331 1122
Q ss_pred C-CCccccceeec
Q 047314 134 E-ASLPNLQKLIG 145 (173)
Q Consensus 134 ~-~~l~~L~~L~l 145 (173)
. ..+++|+.|++
T Consensus 171 ~L~~lknLr~L~l 183 (221)
T KOG3864|consen 171 CLLKLKNLRRLHL 183 (221)
T ss_pred HHHHhhhhHHHHh
Confidence 2 56677777666
No 79
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=68.27 E-value=0.91 Score=33.11 Aligned_cols=70 Identities=17% Similarity=0.180 Sum_probs=43.8
Q ss_pred ccEEEecCcccc-cchhhhCCCCCCcEEeccCCc-ccc-cCcccc-CCCCccEEEecCC-CCCCC--------CcceEEE
Q 047314 54 LQVLDLEGVYMA-LLDSSVGNLIHLRYLDLRKTW-LKK-LPSSMG-NLFNLQSLDLSST-LVDPI--------PLLKHVC 120 (173)
Q Consensus 54 L~~L~l~~n~l~-~~~~~~~~l~~L~~l~l~~~~-~~~-~p~~l~-~l~~L~~L~l~~~-~~~~l--------p~L~~L~ 120 (173)
++.++-+++.|. .-...+.++..++.+.+.++. +.. .-..++ ..++|+.|++++| .|++- ++|+.|.
T Consensus 103 IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~ 182 (221)
T KOG3864|consen 103 IEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRLH 182 (221)
T ss_pred EEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHHH
Confidence 455677777776 555667777888888777654 221 122333 3578999999988 46543 2666665
Q ss_pred eec
Q 047314 121 FNE 123 (173)
Q Consensus 121 l~~ 123 (173)
+.+
T Consensus 183 l~~ 185 (221)
T KOG3864|consen 183 LYD 185 (221)
T ss_pred hcC
Confidence 543
No 80
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=67.69 E-value=3.9 Score=19.40 Aligned_cols=14 Identities=29% Similarity=0.309 Sum_probs=9.1
Q ss_pred CcccEEEecCcccc
Q 047314 52 RLLQVLDLEGVYMA 65 (173)
Q Consensus 52 ~~L~~L~l~~n~l~ 65 (173)
++|++|++++|.+.
T Consensus 2 ~~L~~LdL~~N~i~ 15 (28)
T smart00368 2 PSLRELDLSNNKLG 15 (28)
T ss_pred CccCEEECCCCCCC
Confidence 45667777777665
No 81
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=66.68 E-value=1.2 Score=35.99 Aligned_cols=74 Identities=19% Similarity=0.085 Sum_probs=41.4
Q ss_pred CCCccEEEecCC-CCCCCC---------cceEEEeecee-ccccCCCCC-CCccccceeec--------cccccccCCCC
Q 047314 97 LFNLQSLDLSST-LVDPIP---------LLKHVCFNEFR-EMVVNPPVE-ASLPNLQKLIG--------TEMVCSSGRFS 156 (173)
Q Consensus 97 l~~L~~L~l~~~-~~~~lp---------~L~~L~l~~n~-~~~~~lp~~-~~l~~L~~L~l--------~~~~~~l~~l~ 156 (173)
+..|++++.+++ .+...+ +|+.+.+..|. ++...+... .+++.|+.+++ +.+...-.+++
T Consensus 293 c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~ 372 (483)
T KOG4341|consen 293 CHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCP 372 (483)
T ss_pred hhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCc
Confidence 445566666655 233222 77777777764 332111222 67777777777 22333345677
Q ss_pred CcCEEEEeceeeec
Q 047314 157 HLQFLKLSNIRVEE 170 (173)
Q Consensus 157 ~L~~L~l~~~~~~~ 170 (173)
.||.|.++.|+--.
T Consensus 373 ~lr~lslshce~it 386 (483)
T KOG4341|consen 373 RLRVLSLSHCELIT 386 (483)
T ss_pred hhccCChhhhhhhh
Confidence 77777777665443
No 82
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=62.78 E-value=1.7 Score=35.14 Aligned_cols=96 Identities=25% Similarity=0.208 Sum_probs=59.2
Q ss_pred CCCCcEEeccCCc-ccc--cCccccCCCCccEEEecCC--CCCCCC-----------cceEEEeecee-ccccCCCCC-C
Q 047314 74 LIHLRYLDLRKTW-LKK--LPSSMGNLFNLQSLDLSST--LVDPIP-----------LLKHVCFNEFR-EMVVNPPVE-A 135 (173)
Q Consensus 74 l~~L~~l~l~~~~-~~~--~p~~l~~l~~L~~L~l~~~--~~~~lp-----------~L~~L~l~~n~-~~~~~lp~~-~ 135 (173)
.+.++.+.+.... +.. +-.....++.|+.++++++ .+...+ +|+.++++.+. ++...+... .
T Consensus 187 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~ 266 (482)
T KOG1947|consen 187 CPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALAS 266 (482)
T ss_pred CchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHh
Confidence 5667777666542 333 2234467888999998873 111111 77888888876 553122222 4
Q ss_pred Cccccceeec--------cccccccCCCCCcCEEEEeceeee
Q 047314 136 SLPNLQKLIG--------TEMVCSSGRFSHLQFLKLSNIRVE 169 (173)
Q Consensus 136 ~l~~L~~L~l--------~~~~~~l~~l~~L~~L~l~~~~~~ 169 (173)
.+++|+.|.+ ..+......+++|++|+++.|...
T Consensus 267 ~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~ 308 (482)
T KOG1947|consen 267 RCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGL 308 (482)
T ss_pred hCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccc
Confidence 5788888876 112222557888999999988765
No 83
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=58.80 E-value=4 Score=33.16 Aligned_cols=62 Identities=24% Similarity=0.293 Sum_probs=28.3
Q ss_pred cccCCCcccEEEecCcc-cc-cchhhhC-CCCCCcEEeccCCc-ccccC-ccc-cCCCCccEEEecCC
Q 047314 47 LAKECRLLQVLDLEGVY-MA-LLDSSVG-NLIHLRYLDLRKTW-LKKLP-SSM-GNLFNLQSLDLSST 108 (173)
Q Consensus 47 ~~~~l~~L~~L~l~~n~-l~-~~~~~~~-~l~~L~~l~l~~~~-~~~~p-~~l-~~l~~L~~L~l~~~ 108 (173)
+-..+..++++..+++. ++ .....++ +..+|+.+.+.+++ ++..- ..+ .++++|+.+++..+
T Consensus 289 i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~ 356 (483)
T KOG4341|consen 289 IACGCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEEC 356 (483)
T ss_pred HhhhhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhccccc
Confidence 34445556666665553 22 2222333 33556666665543 33221 111 33455555555554
No 84
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=47.69 E-value=7.9 Score=32.55 Aligned_cols=72 Identities=24% Similarity=0.246 Sum_probs=42.1
Q ss_pred CCCCCcEEeccCCcccccC--ccc-cCCCCccEEEecCC--CCCC---CC-----cceEEEeeceeccccCCCC------
Q 047314 73 NLIHLRYLDLRKTWLKKLP--SSM-GNLFNLQSLDLSST--LVDP---IP-----LLKHVCFNEFREMVVNPPV------ 133 (173)
Q Consensus 73 ~l~~L~~l~l~~~~~~~~p--~~l-~~l~~L~~L~l~~~--~~~~---lp-----~L~~L~l~~n~~~~~~lp~------ 133 (173)
+.+.+..+.+++|++..+- .++ ..-++|..|+|++| .+.. ++ .|+.|.+.+|++.. +...
T Consensus 216 n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~~el~K~k~l~Leel~l~GNPlc~-tf~~~s~yv~ 294 (585)
T KOG3763|consen 216 NFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSESELDKLKGLPLEELVLEGNPLCT-TFSDRSEYVS 294 (585)
T ss_pred CCcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcchhhhhhhcCCCHHHeeecCCcccc-chhhhHHHHH
Confidence 4556666777777666331 233 34567777777777 2222 11 67778888887774 3321
Q ss_pred -C-CCccccceeec
Q 047314 134 -E-ASLPNLQKLIG 145 (173)
Q Consensus 134 -~-~~l~~L~~L~l 145 (173)
. ..+|+|..||-
T Consensus 295 ~i~~~FPKL~~LDG 308 (585)
T KOG3763|consen 295 AIRELFPKLLRLDG 308 (585)
T ss_pred HHHHhcchheeecC
Confidence 1 25667777764
No 85
>PF05725 FNIP: FNIP Repeat; InterPro: IPR008615 This repeat is approximately 22 residues long and is only found in Dictyostelium discoideum (Slime mould). It appears to be related to IPR001611 from INTERPRO. The alignment consists of two tandem repeats. It is termed the FNIP repeat after the pattern of conserved residues.
Probab=27.48 E-value=1e+02 Score=16.06 Aligned_cols=7 Identities=43% Similarity=0.657 Sum_probs=2.9
Q ss_pred cceEEEe
Q 047314 115 LLKHVCF 121 (173)
Q Consensus 115 ~L~~L~l 121 (173)
+++.|.+
T Consensus 35 sl~~L~f 41 (44)
T PF05725_consen 35 SLKSLSF 41 (44)
T ss_pred CceEEEe
Confidence 4444433
No 86
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=23.22 E-value=54 Score=33.30 Aligned_cols=30 Identities=17% Similarity=0.289 Sum_probs=14.8
Q ss_pred ecCcccccchhh-hCCCCCCcEEeccCCccc
Q 047314 59 LEGVYMALLDSS-VGNLIHLRYLDLRKTWLK 88 (173)
Q Consensus 59 l~~n~l~~~~~~-~~~l~~L~~l~l~~~~~~ 88 (173)
|++|+|+.+|.. |..+.+|+.|+|++|.+.
T Consensus 2 LSnN~LstLp~g~F~~L~sL~~LdLsgNPw~ 32 (2740)
T TIGR00864 2 ISNNKISTIEEGICANLCNLSEIDLSGNPFE 32 (2740)
T ss_pred CCCCcCCccChHHhccCCCceEEEeeCCccc
Confidence 445555544433 344555555555555443
Done!