Query 047314
Match_columns 173
No_of_seqs 129 out of 2559
Neff 9.7
Searched_HMMs 29240
Date Mon Mar 25 17:20:06 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047314.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/047314hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4fcg_A Uncharacterized protein 99.6 4.2E-15 1.4E-19 114.3 8.7 98 46-145 121-236 (328)
2 4fcg_A Uncharacterized protein 99.6 4.9E-15 1.7E-19 113.9 8.8 120 46-167 98-240 (328)
3 3m19_A Variable lymphocyte rec 99.5 7E-14 2.4E-18 103.4 11.9 121 46-168 53-191 (251)
4 2ell_A Acidic leucine-rich nuc 99.5 2.5E-14 8.4E-19 99.5 8.0 119 50-171 22-162 (168)
5 3rfs_A Internalin B, repeat mo 99.5 1.7E-13 5.6E-18 102.5 12.0 119 46-166 79-215 (272)
6 3e6j_A Variable lymphocyte rec 99.5 1.6E-13 5.5E-18 100.3 11.0 115 51-167 39-170 (229)
7 1p9a_G Platelet glycoprotein I 99.5 1.7E-13 5.9E-18 103.6 11.5 115 49-165 74-204 (290)
8 1ogq_A PGIP-2, polygalacturona 99.5 6.3E-14 2.2E-18 106.9 8.8 62 48-109 97-160 (313)
9 1p9a_G Platelet glycoprotein I 99.5 1.8E-13 6.1E-18 103.5 11.1 121 46-169 49-185 (290)
10 2v9t_B SLIT homolog 2 protein 99.5 3.1E-13 1.1E-17 98.2 11.2 114 52-167 32-163 (220)
11 1ogq_A PGIP-2, polygalacturona 99.5 6.2E-14 2.1E-18 106.9 7.7 120 46-167 70-208 (313)
12 2o6q_A Variable lymphocyte rec 99.5 4.3E-13 1.5E-17 100.1 11.9 118 47-166 56-191 (270)
13 3rfs_A Internalin B, repeat mo 99.5 4.6E-13 1.6E-17 100.1 11.9 121 46-169 57-194 (272)
14 1ozn_A Reticulon 4 receptor; N 99.5 3.3E-13 1.1E-17 101.3 10.8 61 48-108 52-115 (285)
15 4ezg_A Putative uncharacterize 99.5 2.4E-13 8.3E-18 97.0 9.6 120 46-169 60-194 (197)
16 2je0_A Acidic leucine-rich nuc 99.5 3.9E-14 1.3E-18 96.6 5.1 113 50-165 15-149 (149)
17 4g8a_A TOLL-like receptor 4; l 99.5 1.8E-13 6E-18 112.4 9.6 114 53-168 53-185 (635)
18 1a9n_A U2A', U2A'; complex (nu 99.5 4.4E-14 1.5E-18 99.2 5.2 121 46-170 13-154 (176)
19 1ozn_A Reticulon 4 receptor; N 99.5 6E-13 2.1E-17 99.9 11.7 121 46-168 74-213 (285)
20 2v70_A SLIT-2, SLIT homolog 2 99.5 4E-13 1.4E-17 97.6 10.3 115 52-167 32-164 (220)
21 1xeu_A Internalin C; cellular 99.5 2.1E-13 7.1E-18 101.7 8.3 118 46-169 57-185 (263)
22 3m19_A Variable lymphocyte rec 99.4 8.5E-13 2.9E-17 97.5 11.3 116 52-169 35-168 (251)
23 1h6t_A Internalin B; cell adhe 99.4 5.8E-13 2E-17 100.7 10.5 95 47-145 63-163 (291)
24 2o6q_A Variable lymphocyte rec 99.4 1.2E-12 4.1E-17 97.7 12.0 120 46-167 79-216 (270)
25 3rgz_A Protein brassinosteroid 99.4 4.7E-13 1.6E-17 113.3 10.7 122 46-168 412-550 (768)
26 2o6s_A Variable lymphocyte rec 99.4 1.6E-12 5.5E-17 93.3 11.7 115 51-167 27-159 (208)
27 1h6u_A Internalin H; cell adhe 99.4 7.8E-13 2.7E-17 100.7 10.3 116 46-166 57-183 (308)
28 1xeu_A Internalin C; cellular 99.4 1.5E-12 5.2E-17 97.0 11.4 118 47-169 36-163 (263)
29 2z66_A Variable lymphocyte rec 99.4 3.2E-13 1.1E-17 102.3 7.5 61 48-108 48-111 (306)
30 2z80_A TOLL-like receptor 2, v 99.4 7.5E-13 2.6E-17 102.3 9.7 118 47-166 71-208 (353)
31 2z66_A Variable lymphocyte rec 99.4 9.8E-13 3.3E-17 99.6 10.1 119 47-167 121-259 (306)
32 3rgz_A Protein brassinosteroid 99.4 7.8E-13 2.7E-17 111.9 10.3 62 47-108 485-548 (768)
33 1h6u_A Internalin H; cell adhe 99.4 2.8E-12 9.5E-17 97.6 11.6 116 48-168 103-229 (308)
34 3zyi_A Leucine-rich repeat-con 99.4 1.3E-12 4.3E-17 104.3 10.1 63 46-108 93-157 (452)
35 1h6t_A Internalin B; cell adhe 99.4 3.6E-12 1.2E-16 96.3 11.9 119 46-169 84-213 (291)
36 2z62_A TOLL-like receptor 4, v 99.4 1.4E-12 4.6E-17 97.5 9.3 99 47-145 47-156 (276)
37 4eco_A Uncharacterized protein 99.4 5.5E-13 1.9E-17 110.8 7.8 121 46-169 200-366 (636)
38 3zyi_A Leucine-rich repeat-con 99.4 2.1E-12 7.2E-17 103.0 10.7 44 47-90 118-162 (452)
39 1w8a_A SLIT protein; signaling 99.4 2.5E-12 8.4E-17 91.5 9.6 92 53-145 30-133 (192)
40 3zyj_A Leucine-rich repeat-con 99.4 2.9E-12 1E-16 101.8 11.0 65 46-110 82-148 (440)
41 3zyj_A Leucine-rich repeat-con 99.4 2.8E-12 9.7E-17 101.9 10.9 121 46-167 106-266 (440)
42 2wfh_A SLIT homolog 2 protein 99.4 3.9E-12 1.3E-16 90.7 10.5 92 52-145 31-133 (193)
43 3vq2_A TLR4, TOLL-like recepto 99.4 1E-12 3.4E-17 108.0 8.3 99 47-145 51-160 (606)
44 1dce_A Protein (RAB geranylger 99.4 1.4E-12 4.7E-17 107.1 9.1 108 53-163 442-567 (567)
45 2z81_A CD282 antigen, TOLL-lik 99.4 1.6E-12 5.4E-17 105.6 9.4 117 47-164 45-180 (549)
46 2id5_A Lingo-1, leucine rich r 99.4 2E-12 7E-17 103.5 9.7 99 46-145 50-159 (477)
47 1m9s_A Internalin B; cell inva 99.4 2.7E-12 9.2E-17 106.1 10.5 96 46-145 59-160 (605)
48 2z62_A TOLL-like receptor 4, v 99.4 1.9E-12 6.6E-17 96.7 8.8 115 52-168 28-161 (276)
49 1xku_A Decorin; proteoglycan, 99.4 2.7E-12 9.2E-17 98.2 9.2 114 52-167 52-182 (330)
50 2z80_A TOLL-like receptor 2, v 99.4 3.4E-12 1.2E-16 98.6 9.9 115 52-168 52-186 (353)
51 2o6s_A Variable lymphocyte rec 99.4 9.6E-12 3.3E-16 89.2 11.3 98 46-145 46-155 (208)
52 3vq2_A TLR4, TOLL-like recepto 99.3 5.1E-12 1.7E-16 103.8 10.9 115 52-168 32-165 (606)
53 2v9t_B SLIT homolog 2 protein 99.3 6.3E-12 2.2E-16 91.2 10.2 98 46-145 50-159 (220)
54 2id5_A Lingo-1, leucine rich r 99.3 6.2E-12 2.1E-16 100.7 10.9 116 52-168 32-164 (477)
55 3e6j_A Variable lymphocyte rec 99.3 7E-12 2.4E-16 91.5 10.2 112 54-169 21-148 (229)
56 4ecn_A Leucine-rich repeat pro 99.3 1.7E-12 5.8E-17 111.1 7.9 120 46-168 442-607 (876)
57 3o6n_A APL1; leucine-rich repe 99.3 4.3E-12 1.5E-16 99.2 9.6 118 48-166 65-196 (390)
58 2z81_A CD282 antigen, TOLL-lik 99.3 5E-12 1.7E-16 102.7 10.3 117 52-168 26-160 (549)
59 3t6q_A CD180 antigen; protein- 99.3 3.6E-12 1.2E-16 104.7 9.4 122 46-167 51-190 (606)
60 3v47_A TOLL-like receptor 5B a 99.3 5.4E-12 1.8E-16 100.2 10.0 117 51-168 274-407 (455)
61 2xwt_C Thyrotropin receptor; s 99.3 2.6E-12 9E-17 94.1 7.5 97 47-145 50-163 (239)
62 4g8a_A TOLL-like receptor 4; l 99.3 3.4E-12 1.2E-16 104.8 8.3 100 46-145 70-180 (635)
63 2z63_A TOLL-like receptor 4, v 99.3 4.2E-12 1.4E-16 103.4 8.7 99 47-145 47-156 (570)
64 2z7x_B TOLL-like receptor 1, v 99.3 5.6E-12 1.9E-16 101.9 9.3 120 46-167 342-479 (520)
65 4fmz_A Internalin; leucine ric 99.3 3.2E-12 1.1E-16 98.2 7.6 116 48-167 217-344 (347)
66 4fmz_A Internalin; leucine ric 99.3 9.9E-12 3.4E-16 95.5 10.2 118 46-168 60-189 (347)
67 2xot_A Amphoterin-induced prot 99.3 6.9E-12 2.4E-16 97.4 9.3 116 52-168 39-175 (361)
68 2ell_A Acidic leucine-rich nuc 99.3 3.8E-12 1.3E-16 88.3 7.0 97 46-145 43-154 (168)
69 3o6n_A APL1; leucine-rich repe 99.3 1.2E-11 4.1E-16 96.7 10.6 117 50-168 43-177 (390)
70 1o6v_A Internalin A; bacterial 99.3 1.1E-11 3.8E-16 99.1 10.7 116 46-166 62-187 (466)
71 4b8c_D Glucose-repressible alc 99.3 3.9E-12 1.3E-16 107.2 8.3 98 46-145 218-323 (727)
72 2v70_A SLIT-2, SLIT homolog 2 99.3 1.2E-11 4E-16 89.8 9.7 98 47-145 52-160 (220)
73 1xku_A Decorin; proteoglycan, 99.3 9.2E-12 3.1E-16 95.2 9.6 32 135-166 237-273 (330)
74 2xwt_C Thyrotropin receptor; s 99.3 5E-12 1.7E-16 92.6 7.7 118 47-167 75-216 (239)
75 3o53_A Protein LRIM1, AGAP0063 99.3 2.6E-12 8.8E-17 98.0 6.3 118 50-169 118-250 (317)
76 3oja_B Anopheles plasmodium-re 99.3 1E-11 3.6E-16 102.3 10.3 118 47-165 70-201 (597)
77 3oja_A Leucine-rich immune mol 99.3 2.7E-12 9.1E-17 103.6 6.5 118 49-168 117-249 (487)
78 3t6q_A CD180 antigen; protein- 99.3 1.1E-11 3.8E-16 101.8 10.1 122 46-167 272-411 (606)
79 4ezg_A Putative uncharacterize 99.3 7.7E-12 2.6E-16 89.1 8.0 98 46-145 82-188 (197)
80 4eco_A Uncharacterized protein 99.3 1.1E-11 3.7E-16 103.0 9.8 94 50-145 431-543 (636)
81 2z63_A TOLL-like receptor 4, v 99.3 1.2E-11 4E-16 100.8 9.6 115 52-168 28-161 (570)
82 4b8c_D Glucose-repressible alc 99.3 4.2E-12 1.4E-16 107.0 7.0 105 62-168 211-328 (727)
83 2z7x_B TOLL-like receptor 1, v 99.3 8.2E-12 2.8E-16 100.9 8.4 117 52-168 21-150 (520)
84 2wfh_A SLIT homolog 2 protein 99.3 1.9E-11 6.3E-16 87.1 9.2 109 55-167 13-137 (193)
85 3oja_B Anopheles plasmodium-re 99.3 1.3E-11 4.4E-16 101.7 9.5 118 50-169 49-184 (597)
86 2ft3_A Biglycan; proteoglycan, 99.3 1.7E-11 5.8E-16 93.9 9.6 112 52-166 54-182 (332)
87 2je0_A Acidic leucine-rich nuc 99.3 2.4E-12 8.1E-17 87.7 4.3 97 46-145 36-147 (149)
88 1ziw_A TOLL-like receptor 3; i 99.3 9.9E-12 3.4E-16 103.4 8.5 120 47-167 44-182 (680)
89 3oja_A Leucine-rich immune mol 99.3 5.2E-12 1.8E-16 101.9 6.5 115 47-167 53-180 (487)
90 1m9s_A Internalin B; cell inva 99.3 2.8E-11 9.7E-16 100.0 11.1 120 46-170 81-211 (605)
91 1ds9_A Outer arm dynein; leuci 99.3 4.6E-14 1.6E-18 100.9 -5.0 118 47-167 43-185 (198)
92 3a79_B TLR6, VLRB.59, TOLL-lik 99.3 2.2E-11 7.5E-16 99.5 10.3 120 46-167 371-508 (562)
93 4ecn_A Leucine-rich repeat pro 99.3 2.4E-11 8.3E-16 104.1 10.8 114 50-166 695-837 (876)
94 1ziw_A TOLL-like receptor 3; i 99.3 1.9E-11 6.6E-16 101.7 9.9 115 52-168 25-157 (680)
95 3a79_B TLR6, VLRB.59, TOLL-lik 99.2 2.2E-11 7.6E-16 99.5 9.3 117 52-168 52-181 (562)
96 4glp_A Monocyte differentiatio 99.2 1.2E-11 4.1E-16 94.0 7.0 116 50-168 143-284 (310)
97 2o6r_A Variable lymphocyte rec 99.2 8.7E-11 3E-15 82.1 10.8 93 51-145 27-131 (177)
98 1dce_A Protein (RAB geranylger 99.2 1.8E-11 6.2E-16 100.5 8.3 97 46-145 457-567 (567)
99 2ft3_A Biglycan; proteoglycan, 99.2 4.6E-11 1.6E-15 91.5 10.0 121 46-168 72-229 (332)
100 3j0a_A TOLL-like receptor 5; m 99.2 2.2E-11 7.6E-16 104.0 9.0 100 46-145 42-155 (844)
101 1wwl_A Monocyte differentiatio 99.2 9.1E-12 3.1E-16 94.8 5.8 61 49-109 118-184 (312)
102 1wwl_A Monocyte differentiatio 99.2 1.8E-11 6.3E-16 93.1 7.4 93 52-145 149-260 (312)
103 3o53_A Protein LRIM1, AGAP0063 99.2 4.3E-12 1.5E-16 96.8 3.9 116 47-169 53-182 (317)
104 3bz5_A Internalin-J, INLJ; leu 99.2 6.6E-11 2.3E-15 94.7 10.8 93 46-145 58-155 (457)
105 3v47_A TOLL-like receptor 5B a 99.2 1.5E-11 5.1E-16 97.7 6.9 120 49-169 209-384 (455)
106 1w8a_A SLIT protein; signaling 99.2 3E-11 1E-15 85.8 7.8 109 55-166 11-136 (192)
107 3bz5_A Internalin-J, INLJ; leu 99.2 3.9E-11 1.3E-15 96.1 9.2 113 46-166 36-158 (457)
108 1o6v_A Internalin A; bacterial 99.2 9.4E-11 3.2E-15 93.8 10.9 116 48-168 261-387 (466)
109 1a9n_A U2A', U2A'; complex (nu 99.2 1.6E-11 5.5E-16 85.9 5.3 95 48-145 37-147 (176)
110 1ds9_A Outer arm dynein; leuci 99.2 5.8E-13 2E-17 95.1 -3.0 110 54-167 25-151 (198)
111 3j0a_A TOLL-like receptor 5; m 99.2 7.1E-11 2.4E-15 100.9 9.3 120 46-166 67-214 (844)
112 2o6r_A Variable lymphocyte rec 99.2 2.2E-10 7.4E-15 80.1 9.9 110 54-167 9-135 (177)
113 4glp_A Monocyte differentiatio 99.2 2.8E-11 9.5E-16 91.9 5.7 119 46-168 163-306 (310)
114 2xot_A Amphoterin-induced prot 99.2 5.2E-11 1.8E-15 92.4 6.8 119 46-166 57-199 (361)
115 1jl5_A Outer protein YOPM; leu 99.1 2.6E-10 9E-15 91.2 10.7 93 47-145 148-244 (454)
116 3g39_A Variable lymphocyte rec 99.1 2.1E-10 7.1E-15 80.0 8.8 76 52-127 30-115 (170)
117 2ast_B S-phase kinase-associat 99.1 1.1E-11 3.7E-16 94.8 2.3 15 152-166 243-257 (336)
118 2r9u_A Variable lymphocyte rec 99.1 2.6E-10 9E-15 79.8 8.8 76 52-127 33-118 (174)
119 2ast_B S-phase kinase-associat 99.1 6.9E-12 2.4E-16 95.9 -0.2 122 47-168 88-234 (336)
120 3g06_A SSPH2 (leucine-rich rep 99.1 7.2E-10 2.5E-14 91.9 10.6 67 98-168 221-296 (622)
121 1jl5_A Outer protein YOPM; leu 99.0 1.1E-09 3.7E-14 87.6 10.3 109 52-167 111-248 (454)
122 3cvr_A Invasion plasmid antige 99.0 1.2E-09 4.1E-14 89.7 10.5 103 52-167 80-191 (571)
123 3cvr_A Invasion plasmid antige 99.0 9E-10 3.1E-14 90.5 9.4 112 49-167 97-241 (571)
124 4ay9_X Follicle-stimulating ho 99.0 7.1E-10 2.4E-14 85.6 7.9 121 46-168 48-214 (350)
125 2ca6_A RAN GTPase-activating p 99.0 7.4E-11 2.5E-15 92.1 1.3 40 49-88 91-135 (386)
126 2r9u_A Variable lymphocyte rec 99.0 1.6E-09 5.4E-14 75.8 8.0 88 54-145 14-112 (174)
127 3g06_A SSPH2 (leucine-rich rep 99.0 3.6E-09 1.2E-13 87.7 11.0 70 52-127 61-134 (622)
128 3g39_A Variable lymphocyte rec 99.0 2E-09 6.7E-14 75.0 8.0 89 53-145 10-109 (170)
129 2ca6_A RAN GTPase-activating p 98.9 1.5E-10 5.1E-15 90.3 -0.5 121 47-167 117-285 (386)
130 2ifg_A High affinity nerve gro 98.9 7.8E-09 2.7E-13 79.4 8.5 80 48-127 27-116 (347)
131 2ifg_A High affinity nerve gro 98.8 1.1E-08 3.8E-13 78.6 7.6 86 56-145 12-110 (347)
132 3goz_A Leucine-rich repeat-con 98.8 1.1E-09 3.7E-14 84.9 1.5 117 52-169 80-238 (362)
133 4ay9_X Follicle-stimulating ho 98.8 1.9E-08 6.4E-13 77.6 8.4 117 46-165 98-255 (350)
134 3goz_A Leucine-rich repeat-con 98.7 2.1E-09 7E-14 83.3 1.7 123 47-169 45-209 (362)
135 1z7x_W Ribonuclease inhibitor; 98.7 1.2E-09 4E-14 86.8 -1.6 117 51-167 255-409 (461)
136 1z7x_W Ribonuclease inhibitor; 98.6 7.1E-09 2.4E-13 82.3 0.3 13 155-167 369-381 (461)
137 3ogk_B Coronatine-insensitive 98.5 9.7E-08 3.3E-12 78.0 4.6 74 49-122 161-251 (592)
138 3ogk_B Coronatine-insensitive 98.4 4.4E-08 1.5E-12 80.0 1.8 118 47-164 187-350 (592)
139 3un9_A NLR family member X1; l 98.3 1.3E-08 4.6E-13 79.3 -3.7 117 52-168 101-251 (372)
140 3un9_A NLR family member X1; l 98.3 5E-08 1.7E-12 76.1 -1.5 118 51-168 71-223 (372)
141 3sb4_A Hypothetical leucine ri 98.3 2E-06 6.7E-11 65.6 6.8 65 97-164 225-305 (329)
142 2p1m_B Transport inhibitor res 98.2 7.2E-08 2.4E-12 78.7 -1.9 60 50-109 103-167 (594)
143 3sb4_A Hypothetical leucine ri 98.2 4.2E-06 1.4E-10 63.8 7.5 89 51-143 225-326 (329)
144 2p1m_B Transport inhibitor res 98.1 1.2E-06 4.2E-11 71.4 2.2 75 50-124 128-221 (594)
145 2ra8_A Uncharacterized protein 98.1 1.3E-06 4.5E-11 67.9 2.2 120 46-168 166-319 (362)
146 3rw6_A Nuclear RNA export fact 97.9 1.3E-06 4.5E-11 65.1 0.3 97 48-145 137-258 (267)
147 1io0_A Tropomodulin; LRR prote 97.8 2.3E-06 7.9E-11 60.1 0.0 82 46-127 30-136 (185)
148 4fdw_A Leucine rich hypothetic 97.8 6.6E-05 2.3E-09 59.0 7.9 62 46-108 174-236 (401)
149 3e4g_A ATP synthase subunit S, 97.6 2.3E-05 7.9E-10 54.7 2.5 33 53-85 62-95 (176)
150 1io0_A Tropomodulin; LRR prote 97.6 2.1E-05 7.3E-10 55.1 2.2 82 46-127 59-164 (185)
151 3rw6_A Nuclear RNA export fact 97.6 7.9E-05 2.7E-09 55.4 4.7 62 49-111 167-233 (267)
152 2ra8_A Uncharacterized protein 97.5 0.00022 7.7E-09 55.3 6.7 119 48-168 135-291 (362)
153 3e4g_A ATP synthase subunit S, 97.4 7.6E-05 2.6E-09 52.1 3.0 71 75-145 61-146 (176)
154 4fdw_A Leucine rich hypothetic 97.4 0.00078 2.7E-08 52.9 8.6 114 46-166 220-355 (401)
155 4gt6_A Cell surface protein; l 96.4 0.014 4.7E-07 45.3 8.3 115 46-164 259-386 (394)
156 3rfe_A Platelet glycoprotein I 96.4 0.0062 2.1E-07 40.0 5.2 55 55-111 11-68 (130)
157 4fs7_A Uncharacterized protein 95.7 0.039 1.3E-06 42.7 7.8 114 46-165 247-375 (394)
158 4h09_A Hypothetical leucine ri 95.7 0.046 1.6E-06 41.9 8.1 14 95-108 283-296 (379)
159 2a5y_B CED-4; apoptosis; HET: 95.4 0.0048 1.6E-07 50.3 1.4 34 1-34 435-473 (549)
160 4fs7_A Uncharacterized protein 95.3 0.13 4.4E-06 39.8 9.2 93 46-145 270-373 (394)
161 3rfe_A Platelet glycoprotein I 95.2 0.019 6.6E-07 37.6 3.6 36 53-88 32-68 (130)
162 4h09_A Hypothetical leucine ri 95.1 0.14 4.8E-06 39.2 9.0 115 46-164 211-341 (379)
163 4gt6_A Cell surface protein; l 95.0 0.21 7.2E-06 38.5 9.7 92 71-166 261-367 (394)
164 1pgv_A TMD-1, tropomodulin TMD 94.9 0.013 4.4E-07 41.5 2.3 78 47-124 36-136 (197)
165 1pgv_A TMD-1, tropomodulin TMD 94.5 0.049 1.7E-06 38.5 4.4 81 46-126 64-169 (197)
166 3sfz_A APAF-1, apoptotic pepti 83.0 0.5 1.7E-05 41.6 2.0 32 1-32 416-452 (1249)
167 1z6t_A APAF-1, apoptotic prote 63.1 2.8 9.5E-05 34.0 1.6 27 2-28 417-448 (591)
168 1vt4_I APAF-1 related killer D 50.4 4.8 0.00017 35.9 1.0 26 1-26 409-437 (1221)
169 2lz0_A Uncharacterized protein 38.1 45 0.0015 20.2 3.8 35 71-106 16-51 (100)
No 1
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.58 E-value=4.2e-15 Score=114.25 Aligned_cols=98 Identities=28% Similarity=0.266 Sum_probs=52.2
Q ss_pred ccccCCCcccEEEecCcccccchhhhCCCCCCcEEeccCCcc-cccCccccC---------CCCccEEEecCCCCCCCC-
Q 047314 46 FLAKECRLLQVLDLEGVYMALLDSSVGNLIHLRYLDLRKTWL-KKLPSSMGN---------LFNLQSLDLSSTLVDPIP- 114 (173)
Q Consensus 46 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~l~~L~~l~l~~~~~-~~~p~~l~~---------l~~L~~L~l~~~~~~~lp- 114 (173)
+.++.+++|++|++++|.++.+|..+.++++|+.|++++|.. ..+|..++. +++|+.|++++|.+..+|
T Consensus 121 ~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~ 200 (328)
T 4fcg_A 121 DTMQQFAGLETLTLARNPLRALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPA 200 (328)
T ss_dssp SCGGGGTTCSEEEEESCCCCCCCGGGGGCTTCCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCCCCCG
T ss_pred HHHhccCCCCEEECCCCccccCcHHHhcCcCCCEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcCcchH
Confidence 345666667777777776666666666666666666665432 244444332 555555555555444443
Q ss_pred ------cceEEEeeceeccccCCCCC-CCccccceeec
Q 047314 115 ------LLKHVCFNEFREMVVNPPVE-ASLPNLQKLIG 145 (173)
Q Consensus 115 ------~L~~L~l~~n~~~~~~lp~~-~~l~~L~~L~l 145 (173)
+|+.|++++|.+. .+|.. +.+++|++|++
T Consensus 201 ~l~~l~~L~~L~L~~N~l~--~l~~~l~~l~~L~~L~L 236 (328)
T 4fcg_A 201 SIANLQNLKSLKIRNSPLS--ALGPAIHHLPKLEELDL 236 (328)
T ss_dssp GGGGCTTCCEEEEESSCCC--CCCGGGGGCTTCCEEEC
T ss_pred hhcCCCCCCEEEccCCCCC--cCchhhccCCCCCEEEC
Confidence 4444444444444 34333 44444444444
No 2
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.58 E-value=4.9e-15 Score=113.85 Aligned_cols=120 Identities=20% Similarity=0.210 Sum_probs=93.9
Q ss_pred ccccCCCcccEEEecCcccccchhhhCCCCCCcEEeccCCcccccCccccCCCCccEEEecCCC-CCC------------
Q 047314 46 FLAKECRLLQVLDLEGVYMALLDSSVGNLIHLRYLDLRKTWLKKLPSSMGNLFNLQSLDLSSTL-VDP------------ 112 (173)
Q Consensus 46 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~l~~L~~l~l~~~~~~~~p~~l~~l~~L~~L~l~~~~-~~~------------ 112 (173)
+.+..+++|++|++++|.++.+|..++.+++|++|++++|.+..+|..++.+++|+.|++++|. ++.
T Consensus 98 ~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~ 177 (328)
T 4fcg_A 98 DQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNPLRALPASIASLNRLRELSIRACPELTELPEPLASTDASG 177 (328)
T ss_dssp SCGGGGTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESCCCCCCCGGGGGCTTCCEEEEEEETTCCCCCSCSEEEC-CC
T ss_pred hhhhhCCCCCEEECCCCCccchhHHHhccCCCCEEECCCCccccCcHHHhcCcCCCEEECCCCCCccccChhHhhccchh
Confidence 4466688888888888888888888888888888888888888888888888888888888862 333
Q ss_pred ----CCcceEEEeeceeccccCCCCC-CCccccceeec-----cccccccCCCCCcCEEEEecee
Q 047314 113 ----IPLLKHVCFNEFREMVVNPPVE-ASLPNLQKLIG-----TEMVCSSGRFSHLQFLKLSNIR 167 (173)
Q Consensus 113 ----lp~L~~L~l~~n~~~~~~lp~~-~~l~~L~~L~l-----~~~~~~l~~l~~L~~L~l~~~~ 167 (173)
+++|+.|++++|.+. .+|.. +.+++|++|++ ..+|..+..+++|+.|+++++.
T Consensus 178 ~~~~l~~L~~L~L~~n~l~--~lp~~l~~l~~L~~L~L~~N~l~~l~~~l~~l~~L~~L~Ls~n~ 240 (328)
T 4fcg_A 178 EHQGLVNLQSLRLEWTGIR--SLPASIANLQNLKSLKIRNSPLSALGPAIHHLPKLEELDLRGCT 240 (328)
T ss_dssp CEEESTTCCEEEEEEECCC--CCCGGGGGCTTCCEEEEESSCCCCCCGGGGGCTTCCEEECTTCT
T ss_pred hhccCCCCCEEECcCCCcC--cchHhhcCCCCCCEEEccCCCCCcCchhhccCCCCCEEECcCCc
Confidence 336788888888887 77777 88888888887 4566677788888888887754
No 3
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.54 E-value=7e-14 Score=103.35 Aligned_cols=121 Identities=24% Similarity=0.266 Sum_probs=99.0
Q ss_pred ccccCCCcccEEEecCcccccch-hhhCCCCCCcEEeccCCcccccC-ccccCCCCccEEEecCCCCCCCC--------c
Q 047314 46 FLAKECRLLQVLDLEGVYMALLD-SSVGNLIHLRYLDLRKTWLKKLP-SSMGNLFNLQSLDLSSTLVDPIP--------L 115 (173)
Q Consensus 46 ~~~~~l~~L~~L~l~~n~l~~~~-~~~~~l~~L~~l~l~~~~~~~~p-~~l~~l~~L~~L~l~~~~~~~lp--------~ 115 (173)
..+..+++|++|++++|.++.++ ..+..+++|+.|++++|.++.+| ..+..+++|+.|++++|.+..+| +
T Consensus 53 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~ 132 (251)
T 3m19_A 53 ATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTK 132 (251)
T ss_dssp TTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTT
T ss_pred hHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCc
Confidence 46888999999999999998544 45788999999999999999776 45688999999999999776655 8
Q ss_pred ceEEEeeceeccccCCCC-C-CCccccceeec-----cccc-cccCCCCCcCEEEEeceee
Q 047314 116 LKHVCFNEFREMVVNPPV-E-ASLPNLQKLIG-----TEMV-CSSGRFSHLQFLKLSNIRV 168 (173)
Q Consensus 116 L~~L~l~~n~~~~~~lp~-~-~~l~~L~~L~l-----~~~~-~~l~~l~~L~~L~l~~~~~ 168 (173)
|+.|++++|.+. .++. . +.+++|++|++ ..++ ..+..+++|+.|++++...
T Consensus 133 L~~L~Ls~N~l~--~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~ 191 (251)
T 3m19_A 133 LKELRLNTNQLQ--SIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQF 191 (251)
T ss_dssp CCEEECCSSCCC--CCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCB
T ss_pred ccEEECcCCcCC--ccCHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCce
Confidence 899999999998 6665 4 88899999998 3333 3578899999999987643
No 4
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.53 E-value=2.5e-14 Score=99.53 Aligned_cols=119 Identities=18% Similarity=0.171 Sum_probs=101.7
Q ss_pred CCCcccEEEecCcccc--cchhhhCCCCCCcEEeccCCcccccCccccCCCCccEEEecCCCCCC-CC-------cceEE
Q 047314 50 ECRLLQVLDLEGVYMA--LLDSSVGNLIHLRYLDLRKTWLKKLPSSMGNLFNLQSLDLSSTLVDP-IP-------LLKHV 119 (173)
Q Consensus 50 ~l~~L~~L~l~~n~l~--~~~~~~~~l~~L~~l~l~~~~~~~~p~~l~~l~~L~~L~l~~~~~~~-lp-------~L~~L 119 (173)
..++++.|++++|.++ .+|..+..+++|+.|++++|.++.+ ..+..+++|+.|++++|.+.. +| +|+.|
T Consensus 22 ~~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 100 (168)
T 2ell_A 22 TPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV-SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHL 100 (168)
T ss_dssp CTTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC-SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEE
T ss_pred CcccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh-hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEE
Confidence 3478999999999998 8888888999999999999998877 778999999999999998877 55 89999
Q ss_pred EeeceeccccCCC--CC-CCccccceeec-----ccccc----ccCCCCCcCEEEEeceeeecc
Q 047314 120 CFNEFREMVVNPP--VE-ASLPNLQKLIG-----TEMVC----SSGRFSHLQFLKLSNIRVEER 171 (173)
Q Consensus 120 ~l~~n~~~~~~lp--~~-~~l~~L~~L~l-----~~~~~----~l~~l~~L~~L~l~~~~~~~~ 171 (173)
++++|.+. .++ .. +.+++|++|++ ...|. .+..+++|+.|+++++...+.
T Consensus 101 ~Ls~N~l~--~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~ 162 (168)
T 2ell_A 101 NLSGNKLK--DISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQEA 162 (168)
T ss_dssp ECBSSSCC--SSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSCBC
T ss_pred eccCCccC--cchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChhhc
Confidence 99999998 555 45 88999999999 34454 688899999999998876543
No 5
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.52 E-value=1.7e-13 Score=102.53 Aligned_cols=119 Identities=24% Similarity=0.266 Sum_probs=74.6
Q ss_pred ccccCCCcccEEEecCcccccchhh-hCCCCCCcEEeccCCcccccCc-cccCCCCccEEEecCCCCCCCC--------c
Q 047314 46 FLAKECRLLQVLDLEGVYMALLDSS-VGNLIHLRYLDLRKTWLKKLPS-SMGNLFNLQSLDLSSTLVDPIP--------L 115 (173)
Q Consensus 46 ~~~~~l~~L~~L~l~~n~l~~~~~~-~~~l~~L~~l~l~~~~~~~~p~-~l~~l~~L~~L~l~~~~~~~lp--------~ 115 (173)
+.+..+++|++|++++|.++.+++. +..+++|+.|++++|.+..+|. .++.+++|+.|++++|.+..++ +
T Consensus 79 ~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~ 158 (272)
T 3rfs_A 79 SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTN 158 (272)
T ss_dssp GGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTT
T ss_pred hhhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCcc
Confidence 4456666677777777766644443 5666777777777776665543 3566677777777777554443 6
Q ss_pred ceEEEeeceeccccCCCC-C-CCccccceeec-----ccc-ccccCCCCCcCEEEEece
Q 047314 116 LKHVCFNEFREMVVNPPV-E-ASLPNLQKLIG-----TEM-VCSSGRFSHLQFLKLSNI 166 (173)
Q Consensus 116 L~~L~l~~n~~~~~~lp~-~-~~l~~L~~L~l-----~~~-~~~l~~l~~L~~L~l~~~ 166 (173)
|+.|++++|.+. .++. . +.+++|++|++ ... +..+..+++|+.|+++++
T Consensus 159 L~~L~l~~n~l~--~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N 215 (272)
T 3rfs_A 159 LTELDLSYNQLQ--SLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDN 215 (272)
T ss_dssp CCEEECCSSCCC--CCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSS
T ss_pred CCEEECCCCCcC--ccCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCC
Confidence 777777777776 4443 3 66677777776 222 333567777777777664
No 6
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.51 E-value=1.6e-13 Score=100.29 Aligned_cols=115 Identities=24% Similarity=0.235 Sum_probs=97.8
Q ss_pred CCcccEEEecCcccccc-hhhhCCCCCCcEEeccCCcccccCc-cccCCCCccEEEecCCCCCCCC--------cceEEE
Q 047314 51 CRLLQVLDLEGVYMALL-DSSVGNLIHLRYLDLRKTWLKKLPS-SMGNLFNLQSLDLSSTLVDPIP--------LLKHVC 120 (173)
Q Consensus 51 l~~L~~L~l~~n~l~~~-~~~~~~l~~L~~l~l~~~~~~~~p~-~l~~l~~L~~L~l~~~~~~~lp--------~L~~L~ 120 (173)
.++|++|++++|.++.+ |..+..+++|+.|++++|.++.+|. .+..+++|+.|++++|.+..++ +|+.|+
T Consensus 39 ~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~ 118 (229)
T 3e6j_A 39 PTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELF 118 (229)
T ss_dssp CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcCCccChhHhCcchhhCeEe
Confidence 37899999999999954 6678899999999999999998875 4688999999999999776665 899999
Q ss_pred eeceeccccCCCCC-CCccccceeec-----cccc-cccCCCCCcCEEEEecee
Q 047314 121 FNEFREMVVNPPVE-ASLPNLQKLIG-----TEMV-CSSGRFSHLQFLKLSNIR 167 (173)
Q Consensus 121 l~~n~~~~~~lp~~-~~l~~L~~L~l-----~~~~-~~l~~l~~L~~L~l~~~~ 167 (173)
+++|.+. .+|.. ..+++|++|++ ..++ ..+..+++|+.|++++..
T Consensus 119 Ls~N~l~--~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~ 170 (229)
T 3e6j_A 119 MCCNKLT--ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNP 170 (229)
T ss_dssp CCSSCCC--SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSC
T ss_pred ccCCccc--ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCC
Confidence 9999999 88888 89999999998 3444 457889999999998754
No 7
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.51 E-value=1.7e-13 Score=103.56 Aligned_cols=115 Identities=23% Similarity=0.208 Sum_probs=58.1
Q ss_pred cCCCcccEEEecCcccccchhhhCCCCCCcEEeccCCcccccC-ccccCCCCccEEEecCCCCCCCC--------cceEE
Q 047314 49 KECRLLQVLDLEGVYMALLDSSVGNLIHLRYLDLRKTWLKKLP-SSMGNLFNLQSLDLSSTLVDPIP--------LLKHV 119 (173)
Q Consensus 49 ~~l~~L~~L~l~~n~l~~~~~~~~~l~~L~~l~l~~~~~~~~p-~~l~~l~~L~~L~l~~~~~~~lp--------~L~~L 119 (173)
+.+++|++|++++|.++.+|..+..+++|+.|++++|+++.+| ..+..+++|+.|++++|.+..+| +|+.|
T Consensus 74 ~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L 153 (290)
T 1p9a_G 74 GTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKL 153 (290)
T ss_dssp SCCTTCCEEECCSSCCSSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEE
T ss_pred CCCCcCCEEECCCCcCCcCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEE
Confidence 3444455555555554444444455555555555555555443 33455555555555555444333 45555
Q ss_pred EeeceeccccCCCCC--CCccccceeec-----cccccccCCCCCcCEEEEec
Q 047314 120 CFNEFREMVVNPPVE--ASLPNLQKLIG-----TEMVCSSGRFSHLQFLKLSN 165 (173)
Q Consensus 120 ~l~~n~~~~~~lp~~--~~l~~L~~L~l-----~~~~~~l~~l~~L~~L~l~~ 165 (173)
++++|.+. .+|.. ..+++|+.|++ ..+|..+..+++|+.+++++
T Consensus 154 ~L~~N~l~--~l~~~~~~~l~~L~~L~L~~N~l~~ip~~~~~~~~L~~l~L~~ 204 (290)
T 1p9a_G 154 SLANNNLT--ELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHG 204 (290)
T ss_dssp ECTTSCCS--CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCCCSEEECCS
T ss_pred ECCCCcCC--ccCHHHhcCcCCCCEEECCCCcCCccChhhcccccCCeEEeCC
Confidence 55555555 44432 44555555555 34455555555555555543
No 8
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.50 E-value=6.3e-14 Score=106.92 Aligned_cols=62 Identities=19% Similarity=0.244 Sum_probs=26.1
Q ss_pred ccCCCcccEEEecCcccc-cchhhhCCCCCCcEEeccCCccc-ccCccccCCCCccEEEecCCC
Q 047314 48 AKECRLLQVLDLEGVYMA-LLDSSVGNLIHLRYLDLRKTWLK-KLPSSMGNLFNLQSLDLSSTL 109 (173)
Q Consensus 48 ~~~l~~L~~L~l~~n~l~-~~~~~~~~l~~L~~l~l~~~~~~-~~p~~l~~l~~L~~L~l~~~~ 109 (173)
++.+++|++|++++|.++ ..|..+.++++|++|++++|.+. .+|..+..+++|++|++++|.
T Consensus 97 l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~ 160 (313)
T 1ogq_A 97 IAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNR 160 (313)
T ss_dssp GGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSC
T ss_pred HhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCc
Confidence 334444444444444443 33444444444444444444443 334444444444444444443
No 9
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.50 E-value=1.8e-13 Score=103.47 Aligned_cols=121 Identities=25% Similarity=0.253 Sum_probs=100.0
Q ss_pred ccccCCCcccEEEecCcccccchhhhCCCCCCcEEeccCCcccccCccccCCCCccEEEecCCCCCCCC--------cce
Q 047314 46 FLAKECRLLQVLDLEGVYMALLDSSVGNLIHLRYLDLRKTWLKKLPSSMGNLFNLQSLDLSSTLVDPIP--------LLK 117 (173)
Q Consensus 46 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~l~~L~~l~l~~~~~~~~p~~l~~l~~L~~L~l~~~~~~~lp--------~L~ 117 (173)
..+..+++|+.|++++|.++.++.. ..+++|+.|++++|.+..+|..+..+++|+.|++++|.+..+| +|+
T Consensus 49 ~~~~~l~~L~~L~L~~n~l~~~~~~-~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~ 127 (290)
T 1p9a_G 49 ATLMPYTRLTQLNLDRAELTKLQVD-GTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQ 127 (290)
T ss_dssp GGGTTCTTCCEEECTTSCCCEEECC-SCCTTCCEEECCSSCCSSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCC
T ss_pred HHhhcCCCCCEEECCCCccCcccCC-CCCCcCCEEECCCCcCCcCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCC
Confidence 4688889999999999998866554 7788999999999999988888889999999999999777665 899
Q ss_pred EEEeeceeccccCCCCC--CCccccceeec-----cccccc-cCCCCCcCEEEEeceeee
Q 047314 118 HVCFNEFREMVVNPPVE--ASLPNLQKLIG-----TEMVCS-SGRFSHLQFLKLSNIRVE 169 (173)
Q Consensus 118 ~L~l~~n~~~~~~lp~~--~~l~~L~~L~l-----~~~~~~-l~~l~~L~~L~l~~~~~~ 169 (173)
.|++++|.+. .+|.. ..+++|+.|++ ..+|.. +..+++|+.|+++++...
T Consensus 128 ~L~L~~N~l~--~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~ 185 (290)
T 1p9a_G 128 ELYLKGNELK--TLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY 185 (290)
T ss_dssp EEECTTSCCC--CCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC
T ss_pred EEECCCCCCC--ccChhhcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCC
Confidence 9999999998 66654 78899999998 455544 578999999999876543
No 10
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.49 E-value=3.1e-13 Score=98.21 Aligned_cols=114 Identities=19% Similarity=0.232 Sum_probs=93.7
Q ss_pred CcccEEEecCcccccchh-hhCCCCCCcEEeccCCccccc-CccccCCCCccEEEecCCCCCCCC--------cceEEEe
Q 047314 52 RLLQVLDLEGVYMALLDS-SVGNLIHLRYLDLRKTWLKKL-PSSMGNLFNLQSLDLSSTLVDPIP--------LLKHVCF 121 (173)
Q Consensus 52 ~~L~~L~l~~n~l~~~~~-~~~~l~~L~~l~l~~~~~~~~-p~~l~~l~~L~~L~l~~~~~~~lp--------~L~~L~l 121 (173)
++++.|++++|.++.+++ .+..+++|+.|++++|.+..+ |..+..+++|+.|++++|.+..+| +|+.|++
T Consensus 32 ~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L 111 (220)
T 2v9t_B 32 ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLL 111 (220)
T ss_dssp TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCccCHhHccCCCCCCEEEC
Confidence 578999999999996555 688899999999999998855 778899999999999999877665 7899999
Q ss_pred eceeccccCC-CCC-CCccccceeec-----cccc-cccCCCCCcCEEEEecee
Q 047314 122 NEFREMVVNP-PVE-ASLPNLQKLIG-----TEMV-CSSGRFSHLQFLKLSNIR 167 (173)
Q Consensus 122 ~~n~~~~~~l-p~~-~~l~~L~~L~l-----~~~~-~~l~~l~~L~~L~l~~~~ 167 (173)
++|.+. .+ |.. +.+++|+.|++ ..++ ..+..+++|+.|++++..
T Consensus 112 ~~N~l~--~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~ 163 (220)
T 2v9t_B 112 NANKIN--CLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNP 163 (220)
T ss_dssp CSSCCC--CCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred CCCCCC--EeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCC
Confidence 999998 45 445 88899999998 3333 347889999999988754
No 11
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.48 E-value=6.2e-14 Score=106.94 Aligned_cols=120 Identities=19% Similarity=0.265 Sum_probs=85.7
Q ss_pred ccccCCCcccEEEecC-cccc-cchhhhCCCCCCcEEeccCCccc-ccCccccCCCCccEEEecCCCCC-CCC-------
Q 047314 46 FLAKECRLLQVLDLEG-VYMA-LLDSSVGNLIHLRYLDLRKTWLK-KLPSSMGNLFNLQSLDLSSTLVD-PIP------- 114 (173)
Q Consensus 46 ~~~~~l~~L~~L~l~~-n~l~-~~~~~~~~l~~L~~l~l~~~~~~-~~p~~l~~l~~L~~L~l~~~~~~-~lp------- 114 (173)
+.++.+++|++|++++ |.++ .+|..+.++++|++|++++|.+. .+|..+..+++|++|++++|.+. .+|
T Consensus 70 ~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~ 149 (313)
T 1ogq_A 70 SSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLP 149 (313)
T ss_dssp GGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCT
T ss_pred hhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHhcCC
Confidence 4577788888888884 7777 77888888888888888888887 77778888888888888888654 333
Q ss_pred cceEEEeeceeccccCCCCC-CCcc-ccceeec------cccccccCCCCCcCEEEEecee
Q 047314 115 LLKHVCFNEFREMVVNPPVE-ASLP-NLQKLIG------TEMVCSSGRFSHLQFLKLSNIR 167 (173)
Q Consensus 115 ~L~~L~l~~n~~~~~~lp~~-~~l~-~L~~L~l------~~~~~~l~~l~~L~~L~l~~~~ 167 (173)
+|+.|++++|.+.+ .+|.. +.++ +|+.|++ +..|..+..++ |+.|+++++.
T Consensus 150 ~L~~L~L~~N~l~~-~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~ 208 (313)
T 1ogq_A 150 NLVGITFDGNRISG-AIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNM 208 (313)
T ss_dssp TCCEEECCSSCCEE-ECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSE
T ss_pred CCCeEECcCCcccC-cCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCc
Confidence 78888888888776 66666 6665 7777777 23444444444 5555554443
No 12
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.48 E-value=4.3e-13 Score=100.08 Aligned_cols=118 Identities=22% Similarity=0.245 Sum_probs=62.5
Q ss_pred cccCCCcccEEEecCcccccchhh-hCCCCCCcEEeccCCcccccCc-cccCCCCccEEEecCCCCCCCC--------cc
Q 047314 47 LAKECRLLQVLDLEGVYMALLDSS-VGNLIHLRYLDLRKTWLKKLPS-SMGNLFNLQSLDLSSTLVDPIP--------LL 116 (173)
Q Consensus 47 ~~~~l~~L~~L~l~~n~l~~~~~~-~~~l~~L~~l~l~~~~~~~~p~-~l~~l~~L~~L~l~~~~~~~lp--------~L 116 (173)
.|..+++|++|++++|.++.+|.. +..+++|+.|++++|.+..+|. .+..+++|+.|++++|.+..++ +|
T Consensus 56 ~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L 135 (270)
T 2o6q_A 56 AFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKL 135 (270)
T ss_dssp SSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred HhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCC
Confidence 455666666666666666654444 3456666666666666655443 3355566666666655443332 55
Q ss_pred eEEEeeceeccccCCCCC--CCccccceeec-----ccccc-ccCCCCCcCEEEEece
Q 047314 117 KHVCFNEFREMVVNPPVE--ASLPNLQKLIG-----TEMVC-SSGRFSHLQFLKLSNI 166 (173)
Q Consensus 117 ~~L~l~~n~~~~~~lp~~--~~l~~L~~L~l-----~~~~~-~l~~l~~L~~L~l~~~ 166 (173)
+.|++++|.+. .+|.. +.+++|+.|++ ..++. .+..+++|+.|+++++
T Consensus 136 ~~L~Ls~n~l~--~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N 191 (270)
T 2o6q_A 136 TYLSLGYNELQ--SLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNN 191 (270)
T ss_dssp CEEECCSSCCC--CCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEECCCCcCC--ccCHhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCC
Confidence 55555555555 34332 45555555555 12222 2444555555555443
No 13
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.48 E-value=4.6e-13 Score=100.12 Aligned_cols=121 Identities=22% Similarity=0.247 Sum_probs=101.7
Q ss_pred ccccCCCcccEEEecCcccccchhhhCCCCCCcEEeccCCcccccCc-cccCCCCccEEEecCCCCCCCC--------cc
Q 047314 46 FLAKECRLLQVLDLEGVYMALLDSSVGNLIHLRYLDLRKTWLKKLPS-SMGNLFNLQSLDLSSTLVDPIP--------LL 116 (173)
Q Consensus 46 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~l~~L~~l~l~~~~~~~~p~-~l~~l~~L~~L~l~~~~~~~lp--------~L 116 (173)
+.+..+++|++|++++|.++.+ +.+..+++|++|++++|.++.++. .++.+++|+.|++++|.+..++ +|
T Consensus 57 ~~l~~l~~L~~L~l~~n~l~~~-~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 135 (272)
T 3rfs_A 57 QGIQYLPNVRYLALGGNKLHDI-SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNL 135 (272)
T ss_dssp TTGGGCTTCCEEECTTSCCCCC-GGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTC
T ss_pred cccccCCCCcEEECCCCCCCCc-hhhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCC
Confidence 5688899999999999999875 478899999999999999997765 4689999999999999776654 89
Q ss_pred eEEEeeceeccccCCCC-C-CCccccceeec-----cccc-cccCCCCCcCEEEEeceeee
Q 047314 117 KHVCFNEFREMVVNPPV-E-ASLPNLQKLIG-----TEMV-CSSGRFSHLQFLKLSNIRVE 169 (173)
Q Consensus 117 ~~L~l~~n~~~~~~lp~-~-~~l~~L~~L~l-----~~~~-~~l~~l~~L~~L~l~~~~~~ 169 (173)
+.|++++|.+. .++. . +.+++|+.|++ ..++ ..++.+++|+.|+++++...
T Consensus 136 ~~L~L~~n~l~--~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~ 194 (272)
T 3rfs_A 136 TYLNLAHNQLQ--SLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLK 194 (272)
T ss_dssp CEEECCSSCCC--CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCS
T ss_pred CEEECCCCccC--ccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCC
Confidence 99999999998 5654 4 88999999999 3333 34688999999999987543
No 14
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.47 E-value=3.3e-13 Score=101.31 Aligned_cols=61 Identities=28% Similarity=0.413 Sum_probs=24.2
Q ss_pred ccCCCcccEEEecCcccccc-hhhhCCCCCCcEEeccCCc-cccc-CccccCCCCccEEEecCC
Q 047314 48 AKECRLLQVLDLEGVYMALL-DSSVGNLIHLRYLDLRKTW-LKKL-PSSMGNLFNLQSLDLSST 108 (173)
Q Consensus 48 ~~~l~~L~~L~l~~n~l~~~-~~~~~~l~~L~~l~l~~~~-~~~~-p~~l~~l~~L~~L~l~~~ 108 (173)
+..+++|++|++++|.++.+ |..+..+++|+.|++++|. +..+ |..+..+++|+.|++++|
T Consensus 52 ~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n 115 (285)
T 1ozn_A 52 FRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRC 115 (285)
T ss_dssp TTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTS
T ss_pred cccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEECCCC
Confidence 33444444444444444422 3333444444444444443 3322 233333444444444443
No 15
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.47 E-value=2.4e-13 Score=96.98 Aligned_cols=120 Identities=15% Similarity=0.139 Sum_probs=95.7
Q ss_pred ccccCCCcccEEEecCcccccchhhhCCCCCCcEEeccCCccc-ccCccccCCCCccEEEecCCCCCC--------CCcc
Q 047314 46 FLAKECRLLQVLDLEGVYMALLDSSVGNLIHLRYLDLRKTWLK-KLPSSMGNLFNLQSLDLSSTLVDP--------IPLL 116 (173)
Q Consensus 46 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~l~~L~~l~l~~~~~~-~~p~~l~~l~~L~~L~l~~~~~~~--------lp~L 116 (173)
+.+..+++|++|++++|.++.++ .+..+++|+.|++++|.++ ..|..++.+++|+.|++++|.+.. +++|
T Consensus 60 ~~l~~l~~L~~L~l~~n~~~~~~-~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L 138 (197)
T 4ezg_A 60 TGIEYAHNIKDLTINNIHATNYN-PISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKV 138 (197)
T ss_dssp TTGGGCTTCSEEEEESCCCSCCG-GGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECCSSBCBGGGHHHHTTCSSC
T ss_pred HHHhcCCCCCEEEccCCCCCcch-hhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEecCCccCcHhHHHHhhCCCC
Confidence 45778899999999999776554 6888999999999999988 468888999999999999997654 3389
Q ss_pred eEEEeecee-ccccCCCCCCCccccceeec-----cccccccCCCCCcCEEEEeceeee
Q 047314 117 KHVCFNEFR-EMVVNPPVEASLPNLQKLIG-----TEMVCSSGRFSHLQFLKLSNIRVE 169 (173)
Q Consensus 117 ~~L~l~~n~-~~~~~lp~~~~l~~L~~L~l-----~~~~~~l~~l~~L~~L~l~~~~~~ 169 (173)
+.|++++|. +. .++..+.+++|++|++ ..++ .+..+++|+.|++++....
T Consensus 139 ~~L~L~~n~~i~--~~~~l~~l~~L~~L~l~~n~i~~~~-~l~~l~~L~~L~l~~N~i~ 194 (197)
T 4ezg_A 139 NSIDLSYNGAIT--DIMPLKTLPELKSLNIQFDGVHDYR-GIEDFPKLNQLYAFSQTIG 194 (197)
T ss_dssp CEEECCSCTBCC--CCGGGGGCSSCCEEECTTBCCCCCT-TGGGCSSCCEEEECBC---
T ss_pred CEEEccCCCCcc--ccHhhcCCCCCCEEECCCCCCcChH-HhccCCCCCEEEeeCcccC
Confidence 999999997 66 6662288899999998 3333 6788999999999887654
No 16
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.47 E-value=3.9e-14 Score=96.63 Aligned_cols=113 Identities=19% Similarity=0.181 Sum_probs=94.7
Q ss_pred CCCcccEEEecCcccc--cchhhhCCCCCCcEEeccCCcccccCccccCCCCccEEEecCCCCCC-CC-------cceEE
Q 047314 50 ECRLLQVLDLEGVYMA--LLDSSVGNLIHLRYLDLRKTWLKKLPSSMGNLFNLQSLDLSSTLVDP-IP-------LLKHV 119 (173)
Q Consensus 50 ~l~~L~~L~l~~n~l~--~~~~~~~~l~~L~~l~l~~~~~~~~p~~l~~l~~L~~L~l~~~~~~~-lp-------~L~~L 119 (173)
..++++.|++++|.++ .+|..+..+++|+.|++++|.++.+ ..++.+++|+.|++++|.+.. +| +|+.|
T Consensus 15 ~~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L 93 (149)
T 2je0_A 15 TPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI-ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHL 93 (149)
T ss_dssp CGGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC-TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEE
T ss_pred CCccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc-hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEE
Confidence 3467999999999998 7888888999999999999998876 778899999999999998877 44 89999
Q ss_pred EeeceeccccCCC--CC-CCccccceeec-----ccccc----ccCCCCCcCEEEEec
Q 047314 120 CFNEFREMVVNPP--VE-ASLPNLQKLIG-----TEMVC----SSGRFSHLQFLKLSN 165 (173)
Q Consensus 120 ~l~~n~~~~~~lp--~~-~~l~~L~~L~l-----~~~~~----~l~~l~~L~~L~l~~ 165 (173)
++++|.+. .++ .. +.+++|++|++ ...|. .+..+++|+.|++++
T Consensus 94 ~ls~N~i~--~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~d 149 (149)
T 2je0_A 94 NLSGNKIK--DLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGYD 149 (149)
T ss_dssp ECTTSCCC--SHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred ECCCCcCC--ChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCCC
Confidence 99999998 443 55 88999999998 33443 578899999998764
No 17
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.47 E-value=1.8e-13 Score=112.41 Aligned_cols=114 Identities=20% Similarity=0.198 Sum_probs=95.3
Q ss_pred cccEEEecCcccccchh-hhCCCCCCcEEeccCCcccccCc-cccCCCCccEEEecCCCCCCCC--------cceEEEee
Q 047314 53 LLQVLDLEGVYMALLDS-SVGNLIHLRYLDLRKTWLKKLPS-SMGNLFNLQSLDLSSTLVDPIP--------LLKHVCFN 122 (173)
Q Consensus 53 ~L~~L~l~~n~l~~~~~-~~~~l~~L~~l~l~~~~~~~~p~-~l~~l~~L~~L~l~~~~~~~lp--------~L~~L~l~ 122 (173)
.+++|++++|.|+.+|+ +|.++++|++|++++|.++.+|+ .|..+++|++|++++|.+..+| +|++|+++
T Consensus 53 ~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~Ls 132 (635)
T 4g8a_A 53 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAV 132 (635)
T ss_dssp TCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEECT
T ss_pred CCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEECC
Confidence 78999999999996654 68899999999999999997754 6889999999999999877665 89999999
Q ss_pred ceeccccCCCC-C-CCccccceeec-------cccccccCCCCCcCEEEEeceee
Q 047314 123 EFREMVVNPPV-E-ASLPNLQKLIG-------TEMVCSSGRFSHLQFLKLSNIRV 168 (173)
Q Consensus 123 ~n~~~~~~lp~-~-~~l~~L~~L~l-------~~~~~~l~~l~~L~~L~l~~~~~ 168 (173)
+|.+. .++. . +++++|++|++ ...|..++.+++|++|+++++..
T Consensus 133 ~N~l~--~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l 185 (635)
T 4g8a_A 133 ETNLA--SLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI 185 (635)
T ss_dssp TSCCC--CSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCC
T ss_pred CCcCC--CCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccc
Confidence 99998 6665 3 88999999998 23466788899999999887653
No 18
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.46 E-value=4.4e-14 Score=99.16 Aligned_cols=121 Identities=17% Similarity=0.207 Sum_probs=99.7
Q ss_pred ccccCCCcccEEEecCcccccchhhhCCCC-CCcEEeccCCcccccCccccCCCCccEEEecCCCCCCCC--------cc
Q 047314 46 FLAKECRLLQVLDLEGVYMALLDSSVGNLI-HLRYLDLRKTWLKKLPSSMGNLFNLQSLDLSSTLVDPIP--------LL 116 (173)
Q Consensus 46 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~l~-~L~~l~l~~~~~~~~p~~l~~l~~L~~L~l~~~~~~~lp--------~L 116 (173)
+.+.++.+|+.|++++|.++.+|. +..+. +|+.|++++|.++.+ ..++.+++|+.|++++|.+..+| +|
T Consensus 13 ~~~~~~~~L~~L~l~~n~l~~i~~-~~~~~~~L~~L~Ls~N~l~~~-~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L 90 (176)
T 1a9n_A 13 AQYTNAVRDRELDLRGYKIPVIEN-LGATLDQFDAIDFSDNEIRKL-DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDL 90 (176)
T ss_dssp CEEECTTSCEEEECTTSCCCSCCC-GGGGTTCCSEEECCSSCCCEE-CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTC
T ss_pred HhcCCcCCceEEEeeCCCCchhHH-hhhcCCCCCEEECCCCCCCcc-cccccCCCCCEEECCCCcccccCcchhhcCCCC
Confidence 456778899999999999997754 55554 899999999999877 67889999999999999887665 89
Q ss_pred eEEEeeceeccccCCCC--C-CCccccceeec-----cccccc----cCCCCCcCEEEEeceeeec
Q 047314 117 KHVCFNEFREMVVNPPV--E-ASLPNLQKLIG-----TEMVCS----SGRFSHLQFLKLSNIRVEE 170 (173)
Q Consensus 117 ~~L~l~~n~~~~~~lp~--~-~~l~~L~~L~l-----~~~~~~----l~~l~~L~~L~l~~~~~~~ 170 (173)
+.|++++|.+. .+|. . +.+++|+.|++ ...|.. +..+++|+.|+++++...+
T Consensus 91 ~~L~L~~N~i~--~~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n~~~~ 154 (176)
T 1a9n_A 91 TELILTNNSLV--ELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVKLKE 154 (176)
T ss_dssp CEEECCSCCCC--CGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEECCHHH
T ss_pred CEEECCCCcCC--cchhhHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCcCCHHH
Confidence 99999999997 7776 5 88899999998 444553 7889999999998876543
No 19
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.46 E-value=6e-13 Score=99.86 Aligned_cols=121 Identities=23% Similarity=0.237 Sum_probs=93.9
Q ss_pred ccccCCCcccEEEecCcc-cccc-hhhhCCCCCCcEEeccCCccccc-CccccCCCCccEEEecCCCCCCCC--------
Q 047314 46 FLAKECRLLQVLDLEGVY-MALL-DSSVGNLIHLRYLDLRKTWLKKL-PSSMGNLFNLQSLDLSSTLVDPIP-------- 114 (173)
Q Consensus 46 ~~~~~l~~L~~L~l~~n~-l~~~-~~~~~~l~~L~~l~l~~~~~~~~-p~~l~~l~~L~~L~l~~~~~~~lp-------- 114 (173)
..+..+++|++|++++|. ++.+ |..+..+++|+.|++++|.+..+ |..+..+++|+.|++++|.+..++
T Consensus 74 ~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~ 153 (285)
T 1ozn_A 74 AAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLG 153 (285)
T ss_dssp TTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCT
T ss_pred hhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCC
Confidence 467888888999998887 7754 66688888899999888888855 566788888899998888665544
Q ss_pred cceEEEeeceeccccCCCC-C-CCccccceeec------cccccccCCCCCcCEEEEeceee
Q 047314 115 LLKHVCFNEFREMVVNPPV-E-ASLPNLQKLIG------TEMVCSSGRFSHLQFLKLSNIRV 168 (173)
Q Consensus 115 ~L~~L~l~~n~~~~~~lp~-~-~~l~~L~~L~l------~~~~~~l~~l~~L~~L~l~~~~~ 168 (173)
+|+.|++++|.+. .++. . ..+++|+.|++ +..|..+..+++|+.|+++++..
T Consensus 154 ~L~~L~l~~n~l~--~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l 213 (285)
T 1ozn_A 154 NLTHLFLHGNRIS--SVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNL 213 (285)
T ss_dssp TCCEEECCSSCCC--EECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCC
T ss_pred CccEEECCCCccc--ccCHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcC
Confidence 7888888888887 5554 3 77888888888 23366788888888888887644
No 20
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.46 E-value=4e-13 Score=97.63 Aligned_cols=115 Identities=15% Similarity=0.144 Sum_probs=90.1
Q ss_pred CcccEEEecCcccccch--hhhCCCCCCcEEeccCCcccccCc-cccCCCCccEEEecCCCCCCCC--------cceEEE
Q 047314 52 RLLQVLDLEGVYMALLD--SSVGNLIHLRYLDLRKTWLKKLPS-SMGNLFNLQSLDLSSTLVDPIP--------LLKHVC 120 (173)
Q Consensus 52 ~~L~~L~l~~n~l~~~~--~~~~~l~~L~~l~l~~~~~~~~p~-~l~~l~~L~~L~l~~~~~~~lp--------~L~~L~ 120 (173)
..++.|++++|.++.++ ..+..+++|+.|++++|.++.++. .+..+++|+.|++++|.+..++ +|+.|+
T Consensus 32 ~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 111 (220)
T 2v70_A 32 QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLM 111 (220)
T ss_dssp TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEE
T ss_pred CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEEE
Confidence 35678999999988553 237788899999999998886654 7888899999999998776655 788999
Q ss_pred eeceeccccCCCCC-CCccccceeec-----cc-cccccCCCCCcCEEEEecee
Q 047314 121 FNEFREMVVNPPVE-ASLPNLQKLIG-----TE-MVCSSGRFSHLQFLKLSNIR 167 (173)
Q Consensus 121 l~~n~~~~~~lp~~-~~l~~L~~L~l-----~~-~~~~l~~l~~L~~L~l~~~~ 167 (173)
+++|.+.+ ..|.. ..+++|+.|++ .. .|..+..+++|+.|++++..
T Consensus 112 Ls~N~l~~-~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~ 164 (220)
T 2v70_A 112 LRSNRITC-VGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANP 164 (220)
T ss_dssp CTTSCCCC-BCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCC
T ss_pred CCCCcCCe-ECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcC
Confidence 99998883 33555 88889999988 23 36678889999999888754
No 21
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.45 E-value=2.1e-13 Score=101.73 Aligned_cols=118 Identities=17% Similarity=0.119 Sum_probs=79.6
Q ss_pred ccccCCCcccEEEecCcccccchhhhCCCCCCcEEeccCCcccccCccccCCCCccEEEecCCCCCCCC------cceEE
Q 047314 46 FLAKECRLLQVLDLEGVYMALLDSSVGNLIHLRYLDLRKTWLKKLPSSMGNLFNLQSLDLSSTLVDPIP------LLKHV 119 (173)
Q Consensus 46 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~l~~L~~l~l~~~~~~~~p~~l~~l~~L~~L~l~~~~~~~lp------~L~~L 119 (173)
+.+..+++|+.|++++|.++.+++ +..+++|+.|++++|.++.+|.... ++|+.|++++|.+..++ +|+.|
T Consensus 57 ~~l~~l~~L~~L~L~~N~i~~~~~-l~~l~~L~~L~L~~N~l~~l~~~~~--~~L~~L~L~~N~l~~~~~l~~l~~L~~L 133 (263)
T 1xeu_A 57 AGMQFFTNLKELHLSHNQISDLSP-LKDLTKLEELSVNRNRLKNLNGIPS--ACLSRLFLDNNELRDTDSLIHLKNLEIL 133 (263)
T ss_dssp TTGGGCTTCCEEECCSSCCCCCGG-GTTCSSCCEEECCSSCCSCCTTCCC--SSCCEEECCSSCCSBSGGGTTCTTCCEE
T ss_pred hHHhhCCCCCEEECCCCccCCChh-hccCCCCCEEECCCCccCCcCcccc--CcccEEEccCCccCCChhhcCcccccEE
Confidence 446667777777777777776655 6777777777777777776654322 67777777777665544 67777
Q ss_pred EeeceeccccCCCCCCCccccceeec-----cccccccCCCCCcCEEEEeceeee
Q 047314 120 CFNEFREMVVNPPVEASLPNLQKLIG-----TEMVCSSGRFSHLQFLKLSNIRVE 169 (173)
Q Consensus 120 ~l~~n~~~~~~lp~~~~l~~L~~L~l-----~~~~~~l~~l~~L~~L~l~~~~~~ 169 (173)
++++|.+. .++..+.+++|+.|++ ... ..+..+++|+.|++++....
T Consensus 134 ~Ls~N~i~--~~~~l~~l~~L~~L~L~~N~i~~~-~~l~~l~~L~~L~l~~N~~~ 185 (263)
T 1xeu_A 134 SIRNNKLK--SIVMLGFLSKLEVLDLHGNEITNT-GGLTRLKKVNWIDLTGQKCV 185 (263)
T ss_dssp ECTTSCCC--BCGGGGGCTTCCEEECTTSCCCBC-TTSTTCCCCCEEEEEEEEEE
T ss_pred ECCCCcCC--CChHHccCCCCCEEECCCCcCcch-HHhccCCCCCEEeCCCCccc
Confidence 77777777 4442266777777777 222 45777888888888776543
No 22
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.45 E-value=8.5e-13 Score=97.49 Aligned_cols=116 Identities=23% Similarity=0.337 Sum_probs=98.4
Q ss_pred CcccEEEecCcccccc-hhhhCCCCCCcEEeccCCcccccC-ccccCCCCccEEEecCCCCCCCC--------cceEEEe
Q 047314 52 RLLQVLDLEGVYMALL-DSSVGNLIHLRYLDLRKTWLKKLP-SSMGNLFNLQSLDLSSTLVDPIP--------LLKHVCF 121 (173)
Q Consensus 52 ~~L~~L~l~~n~l~~~-~~~~~~l~~L~~l~l~~~~~~~~p-~~l~~l~~L~~L~l~~~~~~~lp--------~L~~L~l 121 (173)
+.++.|++++|.++.+ +..+.++++|+.|++++|.++.++ ..+..+++|+.|++++|.+..++ +|+.|++
T Consensus 35 ~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 114 (251)
T 3m19_A 35 ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYL 114 (251)
T ss_dssp TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCcccccChhHhcccCCCCEEEc
Confidence 5799999999999954 456899999999999999999665 55799999999999999877665 8999999
Q ss_pred eceeccccCCCCC--CCccccceeec-----ccccc-ccCCCCCcCEEEEeceeee
Q 047314 122 NEFREMVVNPPVE--ASLPNLQKLIG-----TEMVC-SSGRFSHLQFLKLSNIRVE 169 (173)
Q Consensus 122 ~~n~~~~~~lp~~--~~l~~L~~L~l-----~~~~~-~l~~l~~L~~L~l~~~~~~ 169 (173)
++|.+. .++.. +.+++|+.|++ ..+|. .++.+++|+.|+++++...
T Consensus 115 ~~N~l~--~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 168 (251)
T 3m19_A 115 GGNQLK--SLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQ 168 (251)
T ss_dssp CSSCCC--CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCS
T ss_pred CCCcCC--CcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCC
Confidence 999999 66654 78999999999 44444 5889999999999987543
No 23
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.45 E-value=5.8e-13 Score=100.66 Aligned_cols=95 Identities=23% Similarity=0.229 Sum_probs=50.8
Q ss_pred cccCCCcccEEEecCcccccchhhhCCCCCCcEEeccCCcccccCccccCCCCccEEEecCCCCCCCC------cceEEE
Q 047314 47 LAKECRLLQVLDLEGVYMALLDSSVGNLIHLRYLDLRKTWLKKLPSSMGNLFNLQSLDLSSTLVDPIP------LLKHVC 120 (173)
Q Consensus 47 ~~~~l~~L~~L~l~~n~l~~~~~~~~~l~~L~~l~l~~~~~~~~p~~l~~l~~L~~L~l~~~~~~~lp------~L~~L~ 120 (173)
.+..+++|+.|++++|.++.+++ +..+++|+.|++++|.++.+|. +..+++|+.|++++|.+..++ +|+.|+
T Consensus 63 ~~~~l~~L~~L~L~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~L~~n~i~~~~~l~~l~~L~~L~ 140 (291)
T 1h6t_A 63 GIQYLPNVTKLFLNGNKLTDIKP-LANLKNLGWLFLDENKVKDLSS-LKDLKKLKSLSLEHNGISDINGLVHLPQLESLY 140 (291)
T ss_dssp TGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCGGG-GTTCTTCCEEECTTSCCCCCGGGGGCTTCCEEE
T ss_pred hHhcCCCCCEEEccCCccCCCcc-cccCCCCCEEECCCCcCCCChh-hccCCCCCEEECCCCcCCCChhhcCCCCCCEEE
Confidence 35556666666666666665444 5566666666666665555432 555555666666555544433 455555
Q ss_pred eeceeccccCCCCCCCccccceeec
Q 047314 121 FNEFREMVVNPPVEASLPNLQKLIG 145 (173)
Q Consensus 121 l~~n~~~~~~lp~~~~l~~L~~L~l 145 (173)
+++|.+. .++..+.+++|+.|++
T Consensus 141 l~~n~l~--~~~~l~~l~~L~~L~L 163 (291)
T 1h6t_A 141 LGNNKIT--DITVLSRLTKLDTLSL 163 (291)
T ss_dssp CCSSCCC--CCGGGGGCTTCSEEEC
T ss_pred ccCCcCC--cchhhccCCCCCEEEc
Confidence 5555554 2211144444444444
No 24
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.44 E-value=1.2e-12 Score=97.69 Aligned_cols=120 Identities=23% Similarity=0.257 Sum_probs=101.0
Q ss_pred ccccCCCcccEEEecCcccccchhh-hCCCCCCcEEeccCCcccccC-ccccCCCCccEEEecCCCCCCCC--------c
Q 047314 46 FLAKECRLLQVLDLEGVYMALLDSS-VGNLIHLRYLDLRKTWLKKLP-SSMGNLFNLQSLDLSSTLVDPIP--------L 115 (173)
Q Consensus 46 ~~~~~l~~L~~L~l~~n~l~~~~~~-~~~l~~L~~l~l~~~~~~~~p-~~l~~l~~L~~L~l~~~~~~~lp--------~ 115 (173)
..|..+++|++|++++|.++.+|.. +..+++|+.|++++|.+..+| ..++.+++|+.|++++|.+..+| +
T Consensus 79 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~ 158 (270)
T 2o6q_A 79 GIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTS 158 (270)
T ss_dssp TTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTT
T ss_pred hhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcc
Confidence 4578899999999999999976654 678999999999999999775 45789999999999999776655 8
Q ss_pred ceEEEeeceeccccCCCC-C-CCccccceeec-----ccccc-ccCCCCCcCEEEEecee
Q 047314 116 LKHVCFNEFREMVVNPPV-E-ASLPNLQKLIG-----TEMVC-SSGRFSHLQFLKLSNIR 167 (173)
Q Consensus 116 L~~L~l~~n~~~~~~lp~-~-~~l~~L~~L~l-----~~~~~-~l~~l~~L~~L~l~~~~ 167 (173)
|+.|++++|.+. .++. . ..+++|++|++ ..+|. .+..+++|+.|++++..
T Consensus 159 L~~L~L~~n~l~--~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~ 216 (270)
T 2o6q_A 159 LKELRLYNNQLK--RVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENP 216 (270)
T ss_dssp CCEEECCSSCCS--CCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred cceeEecCCcCc--EeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCC
Confidence 999999999998 6665 3 78999999999 34444 47889999999998754
No 25
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.44 E-value=4.7e-13 Score=113.27 Aligned_cols=122 Identities=25% Similarity=0.281 Sum_probs=98.1
Q ss_pred ccccCCCcccEEEecCcccc-cchhhhCCCCCCcEEeccCCccc-ccCccccCCCCccEEEecCCCCC-CCC-------c
Q 047314 46 FLAKECRLLQVLDLEGVYMA-LLDSSVGNLIHLRYLDLRKTWLK-KLPSSMGNLFNLQSLDLSSTLVD-PIP-------L 115 (173)
Q Consensus 46 ~~~~~l~~L~~L~l~~n~l~-~~~~~~~~l~~L~~l~l~~~~~~-~~p~~l~~l~~L~~L~l~~~~~~-~lp-------~ 115 (173)
..++.+++|++|++++|.++ ..|..+..+++|+.|++++|.+. .+|..++.+++|+.|++++|.+. .+| +
T Consensus 412 ~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~ 491 (768)
T 3rgz_A 412 PTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTN 491 (768)
T ss_dssp GGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTT
T ss_pred HHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCC
Confidence 45777888888888888887 67777888888888888888877 67788888888888888888665 344 7
Q ss_pred ceEEEeeceeccccCCCCC-CCccccceeec------cccccccCCCCCcCEEEEeceee
Q 047314 116 LKHVCFNEFREMVVNPPVE-ASLPNLQKLIG------TEMVCSSGRFSHLQFLKLSNIRV 168 (173)
Q Consensus 116 L~~L~l~~n~~~~~~lp~~-~~l~~L~~L~l------~~~~~~l~~l~~L~~L~l~~~~~ 168 (173)
|+.|++++|.+.+ .+|.. +.+++|++|++ +.+|..++.+++|+.|+++++..
T Consensus 492 L~~L~L~~N~l~~-~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l 550 (768)
T 3rgz_A 492 LNWISLSNNRLTG-EIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLF 550 (768)
T ss_dssp CCEEECCSSCCCS-CCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEE
T ss_pred CCEEEccCCccCC-cCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCcc
Confidence 8888888888886 67777 88888888888 56788888889999998887754
No 26
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.43 E-value=1.6e-12 Score=93.27 Aligned_cols=115 Identities=25% Similarity=0.294 Sum_probs=89.8
Q ss_pred CCcccEEEecCcccccchhh-hCCCCCCcEEeccCCcccccCcc-ccCCCCccEEEecCCCCCCCC--------cceEEE
Q 047314 51 CRLLQVLDLEGVYMALLDSS-VGNLIHLRYLDLRKTWLKKLPSS-MGNLFNLQSLDLSSTLVDPIP--------LLKHVC 120 (173)
Q Consensus 51 l~~L~~L~l~~n~l~~~~~~-~~~l~~L~~l~l~~~~~~~~p~~-l~~l~~L~~L~l~~~~~~~lp--------~L~~L~ 120 (173)
.+++++|++++|.++.++.. +..+++|+.|++++|.++.+|.. +..+++|++|++++|.+..++ +|+.|+
T Consensus 27 ~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 106 (208)
T 2o6s_A 27 PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELA 106 (208)
T ss_dssp CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEE
Confidence 45788999999988865554 67888999999999988877654 578889999999988766554 788999
Q ss_pred eeceeccccCCCC-C-CCccccceeec-----cccccc-cCCCCCcCEEEEecee
Q 047314 121 FNEFREMVVNPPV-E-ASLPNLQKLIG-----TEMVCS-SGRFSHLQFLKLSNIR 167 (173)
Q Consensus 121 l~~n~~~~~~lp~-~-~~l~~L~~L~l-----~~~~~~-l~~l~~L~~L~l~~~~ 167 (173)
+++|.+. .++. . +.+++|+.|++ ..++.. +..+++|+.|++++..
T Consensus 107 L~~N~l~--~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~ 159 (208)
T 2o6s_A 107 LNTNQLQ--SLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNP 159 (208)
T ss_dssp CCSSCCC--CCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCC
T ss_pred cCCCcCc--ccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCC
Confidence 9999888 5554 3 78888999988 334443 7788899999888753
No 27
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.43 E-value=7.8e-13 Score=100.66 Aligned_cols=116 Identities=24% Similarity=0.228 Sum_probs=63.8
Q ss_pred ccccCCCcccEEEecCcccccchhhhCCCCCCcEEeccCCcccccCccccCCCCccEEEecCCCCCCCC------cceEE
Q 047314 46 FLAKECRLLQVLDLEGVYMALLDSSVGNLIHLRYLDLRKTWLKKLPSSMGNLFNLQSLDLSSTLVDPIP------LLKHV 119 (173)
Q Consensus 46 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~l~~L~~l~l~~~~~~~~p~~l~~l~~L~~L~l~~~~~~~lp------~L~~L 119 (173)
+.+..+++|++|++++|.++.+++ +..+++|+.|++++|.++.++ .+..+++|+.|++++|.+..++ +|+.|
T Consensus 57 ~~~~~l~~L~~L~L~~n~i~~~~~-~~~l~~L~~L~L~~n~l~~~~-~~~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L 134 (308)
T 1h6u_A 57 EGVQYLNNLIGLELKDNQITDLAP-LKNLTKITELELSGNPLKNVS-AIAGLQSIKTLDLTSTQITDVTPLAGLSNLQVL 134 (308)
T ss_dssp TTGGGCTTCCEEECCSSCCCCCGG-GTTCCSCCEEECCSCCCSCCG-GGTTCTTCCEEECTTSCCCCCGGGTTCTTCCEE
T ss_pred hhhhccCCCCEEEccCCcCCCChh-HccCCCCCEEEccCCcCCCch-hhcCCCCCCEEECCCCCCCCchhhcCCCCCCEE
Confidence 345566666666666666665555 666666666666666665543 4556666666666666554433 55566
Q ss_pred EeeceeccccCCCCCCCccccceeec-----cccccccCCCCCcCEEEEece
Q 047314 120 CFNEFREMVVNPPVEASLPNLQKLIG-----TEMVCSSGRFSHLQFLKLSNI 166 (173)
Q Consensus 120 ~l~~n~~~~~~lp~~~~l~~L~~L~l-----~~~~~~l~~l~~L~~L~l~~~ 166 (173)
++++|.+. .++..+.+++|+.|++ ..++. +..+++|+.|+++++
T Consensus 135 ~l~~n~l~--~~~~l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n 183 (308)
T 1h6u_A 135 YLDLNQIT--NISPLAGLTNLQYLSIGNAQVSDLTP-LANLSKLTTLKADDN 183 (308)
T ss_dssp ECCSSCCC--CCGGGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSS
T ss_pred ECCCCccC--cCccccCCCCccEEEccCCcCCCChh-hcCCCCCCEEECCCC
Confidence 66655555 3322244455555555 12222 444455555554443
No 28
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.42 E-value=1.5e-12 Score=97.00 Aligned_cols=118 Identities=19% Similarity=0.224 Sum_probs=101.5
Q ss_pred cccCCCcccEEEecCcccccchhhhCCCCCCcEEeccCCcccccCccccCCCCccEEEecCCCCCCCC-----cceEEEe
Q 047314 47 LAKECRLLQVLDLEGVYMALLDSSVGNLIHLRYLDLRKTWLKKLPSSMGNLFNLQSLDLSSTLVDPIP-----LLKHVCF 121 (173)
Q Consensus 47 ~~~~l~~L~~L~l~~n~l~~~~~~~~~l~~L~~l~l~~~~~~~~p~~l~~l~~L~~L~l~~~~~~~lp-----~L~~L~l 121 (173)
.+..+++|+.|++++|.++.++ .+..+++|+.|++++|.++.+|. +..+++|+.|++++|.+..+| +|+.|++
T Consensus 36 ~~~~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~L~~N~i~~~~~-l~~l~~L~~L~L~~N~l~~l~~~~~~~L~~L~L 113 (263)
T 1xeu_A 36 SQKELSGVQNFNGDNSNIQSLA-GMQFFTNLKELHLSHNQISDLSP-LKDLTKLEELSVNRNRLKNLNGIPSACLSRLFL 113 (263)
T ss_dssp CHHHHTTCSEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCSSCCEEECCSSCCSCCTTCCCSSCCEEEC
T ss_pred chhhcCcCcEEECcCCCcccch-HHhhCCCCCEEECCCCccCCChh-hccCCCCCEEECCCCccCCcCccccCcccEEEc
Confidence 4678899999999999999877 78899999999999999998877 899999999999999887776 8999999
Q ss_pred eceeccccCCCCCCCccccceeec-----cccccccCCCCCcCEEEEeceeee
Q 047314 122 NEFREMVVNPPVEASLPNLQKLIG-----TEMVCSSGRFSHLQFLKLSNIRVE 169 (173)
Q Consensus 122 ~~n~~~~~~lp~~~~l~~L~~L~l-----~~~~~~l~~l~~L~~L~l~~~~~~ 169 (173)
++|.+. .++..+.+++|+.|++ ..++ .+..+++|+.|+++++...
T Consensus 114 ~~N~l~--~~~~l~~l~~L~~L~Ls~N~i~~~~-~l~~l~~L~~L~L~~N~i~ 163 (263)
T 1xeu_A 114 DNNELR--DTDSLIHLKNLEILSIRNNKLKSIV-MLGFLSKLEVLDLHGNEIT 163 (263)
T ss_dssp CSSCCS--BSGGGTTCTTCCEEECTTSCCCBCG-GGGGCTTCCEEECTTSCCC
T ss_pred cCCccC--CChhhcCcccccEEECCCCcCCCCh-HHccCCCCCEEECCCCcCc
Confidence 999998 5543388999999999 3444 6888999999999987654
No 29
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.42 E-value=3.2e-13 Score=102.29 Aligned_cols=61 Identities=23% Similarity=0.224 Sum_probs=30.7
Q ss_pred ccCCCcccEEEecCcccccc---hhhhCCCCCCcEEeccCCcccccCccccCCCCccEEEecCC
Q 047314 48 AKECRLLQVLDLEGVYMALL---DSSVGNLIHLRYLDLRKTWLKKLPSSMGNLFNLQSLDLSST 108 (173)
Q Consensus 48 ~~~l~~L~~L~l~~n~l~~~---~~~~~~l~~L~~l~l~~~~~~~~p~~l~~l~~L~~L~l~~~ 108 (173)
|.++++|++|++++|.++.. +..+..+++|+.|++++|.+..+|..+..+++|+.|++++|
T Consensus 48 ~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~l~~~~~~l~~L~~L~l~~n 111 (306)
T 2z66_A 48 FDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHS 111 (306)
T ss_dssp TTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEEEEEEEEETCTTCCEEECTTS
T ss_pred hhccccCCEEECCCCccCcccCcccccccccccCEEECCCCccccChhhcCCCCCCCEEECCCC
Confidence 45555566666655555422 33444455555555555554444444444445555555444
No 30
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.42 E-value=7.5e-13 Score=102.27 Aligned_cols=118 Identities=23% Similarity=0.176 Sum_probs=63.3
Q ss_pred cccCCCcccEEEecCcccccc-hhhhCCCCCCcEEeccCCcccccCcc-ccCCCCccEEEecCCCCCCCC---------c
Q 047314 47 LAKECRLLQVLDLEGVYMALL-DSSVGNLIHLRYLDLRKTWLKKLPSS-MGNLFNLQSLDLSSTLVDPIP---------L 115 (173)
Q Consensus 47 ~~~~l~~L~~L~l~~n~l~~~-~~~~~~l~~L~~l~l~~~~~~~~p~~-l~~l~~L~~L~l~~~~~~~lp---------~ 115 (173)
.+.++++|++|++++|.++.+ |..+.++++|++|++++|.++.+|.. ++.+++|+.|++++|.+..+| +
T Consensus 71 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~ 150 (353)
T 2z80_A 71 DLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTK 150 (353)
T ss_dssp TTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTT
T ss_pred HhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCC
Confidence 455566666666666665533 33455566666666666666555543 455666666666665443322 5
Q ss_pred ceEEEeecee-ccccCC-CCC-CCccccceeec------cccccccCCCCCcCEEEEece
Q 047314 116 LKHVCFNEFR-EMVVNP-PVE-ASLPNLQKLIG------TEMVCSSGRFSHLQFLKLSNI 166 (173)
Q Consensus 116 L~~L~l~~n~-~~~~~l-p~~-~~l~~L~~L~l------~~~~~~l~~l~~L~~L~l~~~ 166 (173)
|+.|++++|. +. .+ +.. +.+++|+.|++ +..|..++.+++|++|+++++
T Consensus 151 L~~L~l~~n~~~~--~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n 208 (353)
T 2z80_A 151 LQILRVGNMDTFT--KIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMK 208 (353)
T ss_dssp CCEEEEEESSSCC--EECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECS
T ss_pred CcEEECCCCcccc--ccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCC
Confidence 5666666552 33 23 223 55556666655 122445555555555555544
No 31
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.42 E-value=9.8e-13 Score=99.60 Aligned_cols=119 Identities=23% Similarity=0.229 Sum_probs=76.8
Q ss_pred cccCCCcccEEEecCcccc-cchhhhCCCCCCcEEeccCCcccc--cCccccCCCCccEEEecCCCCCCC--------Cc
Q 047314 47 LAKECRLLQVLDLEGVYMA-LLDSSVGNLIHLRYLDLRKTWLKK--LPSSMGNLFNLQSLDLSSTLVDPI--------PL 115 (173)
Q Consensus 47 ~~~~l~~L~~L~l~~n~l~-~~~~~~~~l~~L~~l~l~~~~~~~--~p~~l~~l~~L~~L~l~~~~~~~l--------p~ 115 (173)
.+..+++|++|++++|.++ ..+..+..+++|+.|++++|.+.. .|..+..+++|+.|++++|.+..+ ++
T Consensus 121 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~ 200 (306)
T 2z66_A 121 VFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSS 200 (306)
T ss_dssp TTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTT
T ss_pred hhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCC
Confidence 4566667777777777666 444456666777777777776653 566667777777777777755443 26
Q ss_pred ceEEEeeceeccccCCCC-C-CCccccceeec------cccccccCCCC-CcCEEEEecee
Q 047314 116 LKHVCFNEFREMVVNPPV-E-ASLPNLQKLIG------TEMVCSSGRFS-HLQFLKLSNIR 167 (173)
Q Consensus 116 L~~L~l~~n~~~~~~lp~-~-~~l~~L~~L~l------~~~~~~l~~l~-~L~~L~l~~~~ 167 (173)
|+.|++++|.+. .++. . ..+++|+.|++ +..|..+..++ +|+.|++++..
T Consensus 201 L~~L~L~~N~l~--~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~ 259 (306)
T 2z66_A 201 LQVLNMSHNNFF--SLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQND 259 (306)
T ss_dssp CCEEECTTSCCS--BCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCC
T ss_pred CCEEECCCCccC--ccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCC
Confidence 777777777776 4444 3 66677777777 33455566663 77777776654
No 32
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.41 E-value=7.8e-13 Score=111.90 Aligned_cols=62 Identities=23% Similarity=0.364 Sum_probs=32.9
Q ss_pred cccCCCcccEEEecCcccc-cchhhhCCCCCCcEEeccCCccc-ccCccccCCCCccEEEecCC
Q 047314 47 LAKECRLLQVLDLEGVYMA-LLDSSVGNLIHLRYLDLRKTWLK-KLPSSMGNLFNLQSLDLSST 108 (173)
Q Consensus 47 ~~~~l~~L~~L~l~~n~l~-~~~~~~~~l~~L~~l~l~~~~~~-~~p~~l~~l~~L~~L~l~~~ 108 (173)
.+..+++|++|++++|.++ .+|..++.+++|+.|++++|.+. .+|..++.+++|+.|++++|
T Consensus 485 ~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N 548 (768)
T 3rgz_A 485 GLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTN 548 (768)
T ss_dssp GGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSS
T ss_pred HHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCC
Confidence 3455555555555555555 45555555555555555555554 44545555555555544444
No 33
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.40 E-value=2.8e-12 Score=97.61 Aligned_cols=116 Identities=21% Similarity=0.264 Sum_probs=55.7
Q ss_pred ccCCCcccEEEecCcccccchhhhCCCCCCcEEeccCCcccccCccccCCCCccEEEecCCCCCCCC------cceEEEe
Q 047314 48 AKECRLLQVLDLEGVYMALLDSSVGNLIHLRYLDLRKTWLKKLPSSMGNLFNLQSLDLSSTLVDPIP------LLKHVCF 121 (173)
Q Consensus 48 ~~~l~~L~~L~l~~n~l~~~~~~~~~l~~L~~l~l~~~~~~~~p~~l~~l~~L~~L~l~~~~~~~lp------~L~~L~l 121 (173)
+..+++|+.|++++|.++.++. +..+++|+.|++++|.++.++. ++.+++|+.|++++|.+..++ +|+.|++
T Consensus 103 ~~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l 180 (308)
T 1h6u_A 103 IAGLQSIKTLDLTSTQITDVTP-LAGLSNLQVLYLDLNQITNISP-LAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKA 180 (308)
T ss_dssp GTTCTTCCEEECTTSCCCCCGG-GTTCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEEC
T ss_pred hcCCCCCCEEECCCCCCCCchh-hcCCCCCCEEECCCCccCcCcc-ccCCCCccEEEccCCcCCCChhhcCCCCCCEEEC
Confidence 3334444444444444443322 4444444444444444443332 444445555555555433332 4555555
Q ss_pred eceeccccCCCCCCCccccceeec-----cccccccCCCCCcCEEEEeceee
Q 047314 122 NEFREMVVNPPVEASLPNLQKLIG-----TEMVCSSGRFSHLQFLKLSNIRV 168 (173)
Q Consensus 122 ~~n~~~~~~lp~~~~l~~L~~L~l-----~~~~~~l~~l~~L~~L~l~~~~~ 168 (173)
++|.+. .++....+++|++|++ ...+ .+..+++|+.|+++++..
T Consensus 181 ~~n~l~--~~~~l~~l~~L~~L~L~~N~l~~~~-~l~~l~~L~~L~l~~N~i 229 (308)
T 1h6u_A 181 DDNKIS--DISPLASLPNLIEVHLKNNQISDVS-PLANTSNLFIVTLTNQTI 229 (308)
T ss_dssp CSSCCC--CCGGGGGCTTCCEEECTTSCCCBCG-GGTTCTTCCEEEEEEEEE
T ss_pred CCCccC--cChhhcCCCCCCEEEccCCccCccc-cccCCCCCCEEEccCCee
Confidence 555554 3332244556666665 2223 356677777777766654
No 34
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.40 E-value=1.3e-12 Score=104.25 Aligned_cols=63 Identities=25% Similarity=0.301 Sum_probs=29.7
Q ss_pred ccccCCCcccEEEecCccccc-chhhhCCCCCCcEEeccCCcccccCc-cccCCCCccEEEecCC
Q 047314 46 FLAKECRLLQVLDLEGVYMAL-LDSSVGNLIHLRYLDLRKTWLKKLPS-SMGNLFNLQSLDLSST 108 (173)
Q Consensus 46 ~~~~~l~~L~~L~l~~n~l~~-~~~~~~~l~~L~~l~l~~~~~~~~p~-~l~~l~~L~~L~l~~~ 108 (173)
..|..+++|+.|++++|.++. .+..+..+++|+.|++++|.++.+|. .+..+++|+.|++++|
T Consensus 93 ~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N 157 (452)
T 3zyi_A 93 DTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNN 157 (452)
T ss_dssp TTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEECCSC
T ss_pred HHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEECCCC
Confidence 344555555555555555552 22334445555555555554444432 2344444444444444
No 35
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.40 E-value=3.6e-12 Score=96.27 Aligned_cols=119 Identities=20% Similarity=0.192 Sum_probs=101.2
Q ss_pred ccccCCCcccEEEecCcccccchhhhCCCCCCcEEeccCCcccccCccccCCCCccEEEecCCCCCCCC------cceEE
Q 047314 46 FLAKECRLLQVLDLEGVYMALLDSSVGNLIHLRYLDLRKTWLKKLPSSMGNLFNLQSLDLSSTLVDPIP------LLKHV 119 (173)
Q Consensus 46 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~l~~L~~l~l~~~~~~~~p~~l~~l~~L~~L~l~~~~~~~lp------~L~~L 119 (173)
+.+..+++|+.|++++|.++.++. +..+++|+.|++++|.+..+ +.+..+++|+.|++++|.+..++ +|+.|
T Consensus 84 ~~l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~L~~n~i~~~-~~l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L 161 (291)
T 1h6t_A 84 KPLANLKNLGWLFLDENKVKDLSS-LKDLKKLKSLSLEHNGISDI-NGLVHLPQLESLYLGNNKITDITVLSRLTKLDTL 161 (291)
T ss_dssp GGGTTCTTCCEEECCSSCCCCGGG-GTTCTTCCEEECTTSCCCCC-GGGGGCTTCCEEECCSSCCCCCGGGGGCTTCSEE
T ss_pred cccccCCCCCEEECCCCcCCCChh-hccCCCCCEEECCCCcCCCC-hhhcCCCCCCEEEccCCcCCcchhhccCCCCCEE
Confidence 348899999999999999987654 89999999999999999876 46889999999999999877665 89999
Q ss_pred EeeceeccccCCCCCCCccccceeec-----cccccccCCCCCcCEEEEeceeee
Q 047314 120 CFNEFREMVVNPPVEASLPNLQKLIG-----TEMVCSSGRFSHLQFLKLSNIRVE 169 (173)
Q Consensus 120 ~l~~n~~~~~~lp~~~~l~~L~~L~l-----~~~~~~l~~l~~L~~L~l~~~~~~ 169 (173)
++++|.+. .++....+++|+.|++ ..++ .+..+++|+.|+++++...
T Consensus 162 ~L~~N~l~--~~~~l~~l~~L~~L~L~~N~i~~l~-~l~~l~~L~~L~l~~n~i~ 213 (291)
T 1h6t_A 162 SLEDNQIS--DIVPLAGLTKLQNLYLSKNHISDLR-ALAGLKNLDVLELFSQECL 213 (291)
T ss_dssp ECCSSCCC--CCGGGTTCTTCCEEECCSSCCCBCG-GGTTCTTCSEEEEEEEEEE
T ss_pred EccCCccc--cchhhcCCCccCEEECCCCcCCCCh-hhccCCCCCEEECcCCccc
Confidence 99999998 4543477899999999 3444 4889999999999987653
No 36
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.39 E-value=1.4e-12 Score=97.50 Aligned_cols=99 Identities=24% Similarity=0.194 Sum_probs=47.8
Q ss_pred cccCCCcccEEEecCcccccchh-hhCCCCCCcEEeccCCcccccC-ccccCCCCccEEEecCCCCCCCC--------cc
Q 047314 47 LAKECRLLQVLDLEGVYMALLDS-SVGNLIHLRYLDLRKTWLKKLP-SSMGNLFNLQSLDLSSTLVDPIP--------LL 116 (173)
Q Consensus 47 ~~~~l~~L~~L~l~~n~l~~~~~-~~~~l~~L~~l~l~~~~~~~~p-~~l~~l~~L~~L~l~~~~~~~lp--------~L 116 (173)
.+..+++|++|++++|.++.++. .+..+++|+.|++++|.+..++ ..+..+++|+.|++++|.+..++ +|
T Consensus 47 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L 126 (276)
T 2z62_A 47 SFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTL 126 (276)
T ss_dssp TTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTC
T ss_pred HhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEECCCCCccccCchhcccCCCC
Confidence 34455555555555555553222 3445555555555555555332 34455555555555555333222 45
Q ss_pred eEEEeeceeccccCCCCC-CCccccceeec
Q 047314 117 KHVCFNEFREMVVNPPVE-ASLPNLQKLIG 145 (173)
Q Consensus 117 ~~L~l~~n~~~~~~lp~~-~~l~~L~~L~l 145 (173)
+.|++++|.+....+|.. +.+++|++|++
T Consensus 127 ~~L~l~~n~l~~~~l~~~~~~l~~L~~L~L 156 (276)
T 2z62_A 127 KELNVAHNLIQSFKLPEYFSNLTNLEHLDL 156 (276)
T ss_dssp CEEECCSSCCCCCCCCGGGGGCTTCCEEEC
T ss_pred CEEECcCCccceecCchhhccCCCCCEEEC
Confidence 555555555542223444 45555555555
No 37
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.39 E-value=5.5e-13 Score=110.75 Aligned_cols=121 Identities=14% Similarity=0.117 Sum_probs=103.5
Q ss_pred ccccCCCcccEEEecCccccc------------------chhhhC--CCCCCcEEeccCCccc-ccCccccCCCCccEEE
Q 047314 46 FLAKECRLLQVLDLEGVYMAL------------------LDSSVG--NLIHLRYLDLRKTWLK-KLPSSMGNLFNLQSLD 104 (173)
Q Consensus 46 ~~~~~l~~L~~L~l~~n~l~~------------------~~~~~~--~l~~L~~l~l~~~~~~-~~p~~l~~l~~L~~L~ 104 (173)
+.++++++|++|++++|.++. +|..++ ++++|++|++++|.+. .+|..++.+++|+.|+
T Consensus 200 ~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ 279 (636)
T 4eco_A 200 KAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLIN 279 (636)
T ss_dssp GGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEE
T ss_pred HHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEE
Confidence 458899999999999999996 999988 9999999999999866 8899999999999999
Q ss_pred ecCCC-CCC--C-------------CcceEEEeeceeccccCCCC--C-CCccccceeec------cccccccCCCCCcC
Q 047314 105 LSSTL-VDP--I-------------PLLKHVCFNEFREMVVNPPV--E-ASLPNLQKLIG------TEMVCSSGRFSHLQ 159 (173)
Q Consensus 105 l~~~~-~~~--l-------------p~L~~L~l~~n~~~~~~lp~--~-~~l~~L~~L~l------~~~~~~l~~l~~L~ 159 (173)
+++|. +.. + ++|+.|++++|.+. .+|. . +.+++|++|++ +.+| .++.+++|+
T Consensus 280 Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~--~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~ 356 (636)
T 4eco_A 280 VACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK--TFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLA 356 (636)
T ss_dssp CTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS--SCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEES
T ss_pred CcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC--ccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCC
Confidence 99997 664 3 37899999999998 8888 7 88999999988 3677 778888888
Q ss_pred EEEEeceeee
Q 047314 160 FLKLSNIRVE 169 (173)
Q Consensus 160 ~L~l~~~~~~ 169 (173)
.|+++++...
T Consensus 357 ~L~L~~N~l~ 366 (636)
T 4eco_A 357 SLNLAYNQIT 366 (636)
T ss_dssp EEECCSSEEE
T ss_pred EEECCCCccc
Confidence 8888876543
No 38
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.39 E-value=2.1e-12 Score=102.95 Aligned_cols=44 Identities=23% Similarity=0.252 Sum_probs=21.2
Q ss_pred cccCCCcccEEEecCcccccchhh-hCCCCCCcEEeccCCccccc
Q 047314 47 LAKECRLLQVLDLEGVYMALLDSS-VGNLIHLRYLDLRKTWLKKL 90 (173)
Q Consensus 47 ~~~~l~~L~~L~l~~n~l~~~~~~-~~~l~~L~~l~l~~~~~~~~ 90 (173)
.|.++++|++|++++|.++.+|.. +..+++|+.|++++|.+..+
T Consensus 118 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~ 162 (452)
T 3zyi_A 118 AFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESI 162 (452)
T ss_dssp TTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEECCSCCCCEE
T ss_pred hccCcccCCEEECCCCcCCccChhhhcccCCCCEEECCCCCccee
Confidence 344455555555555555533332 44455555555555544433
No 39
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.38 E-value=2.5e-12 Score=91.50 Aligned_cols=92 Identities=23% Similarity=0.265 Sum_probs=45.1
Q ss_pred cccEEEecCcccccchhh--hCCCCCCcEEeccCCccccc-CccccCCCCccEEEecCCCCCCCC--------cceEEEe
Q 047314 53 LLQVLDLEGVYMALLDSS--VGNLIHLRYLDLRKTWLKKL-PSSMGNLFNLQSLDLSSTLVDPIP--------LLKHVCF 121 (173)
Q Consensus 53 ~L~~L~l~~n~l~~~~~~--~~~l~~L~~l~l~~~~~~~~-p~~l~~l~~L~~L~l~~~~~~~lp--------~L~~L~l 121 (173)
+++.|++++|.++.+++. +..+++|+.|++++|.++.+ |..+..+++|+.|++++|.+..++ +|+.|++
T Consensus 30 ~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 109 (192)
T 1w8a_A 30 HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNL 109 (192)
T ss_dssp TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEEC
T ss_pred CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEEC
Confidence 455555555555543332 44555555555555555533 444555555555555555433222 4555555
Q ss_pred eceeccccCCCCC-CCccccceeec
Q 047314 122 NEFREMVVNPPVE-ASLPNLQKLIG 145 (173)
Q Consensus 122 ~~n~~~~~~lp~~-~~l~~L~~L~l 145 (173)
++|.+.+ ..|.. +.+++|++|++
T Consensus 110 ~~N~l~~-~~~~~~~~l~~L~~L~L 133 (192)
T 1w8a_A 110 YDNQISC-VMPGSFEHLNSLTSLNL 133 (192)
T ss_dssp CSSCCCE-ECTTSSTTCTTCCEEEC
T ss_pred CCCcCCe-eCHHHhhcCCCCCEEEe
Confidence 5555553 22333 44455555544
No 40
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.38 E-value=2.9e-12 Score=101.82 Aligned_cols=65 Identities=23% Similarity=0.266 Sum_probs=35.2
Q ss_pred ccccCCCcccEEEecCcccccc-hhhhCCCCCCcEEeccCCcccccCc-cccCCCCccEEEecCCCC
Q 047314 46 FLAKECRLLQVLDLEGVYMALL-DSSVGNLIHLRYLDLRKTWLKKLPS-SMGNLFNLQSLDLSSTLV 110 (173)
Q Consensus 46 ~~~~~l~~L~~L~l~~n~l~~~-~~~~~~l~~L~~l~l~~~~~~~~p~-~l~~l~~L~~L~l~~~~~ 110 (173)
..|..+++|++|++++|.++.+ +..+..+++|+.|++++|.++.+|. .+..+++|+.|++++|.+
T Consensus 82 ~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i 148 (440)
T 3zyj_A 82 NSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPI 148 (440)
T ss_dssp TTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEECCSCCC
T ss_pred HHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCceeeCCCCcc
Confidence 3455566666666666665532 3345555556666665555554443 345555555555555533
No 41
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.38 E-value=2.8e-12 Score=101.88 Aligned_cols=121 Identities=21% Similarity=0.168 Sum_probs=66.8
Q ss_pred ccccCCCcccEEEecCcccccchh-hhCCCCCCcEEeccCCcccccCc-c-------------------------ccCCC
Q 047314 46 FLAKECRLLQVLDLEGVYMALLDS-SVGNLIHLRYLDLRKTWLKKLPS-S-------------------------MGNLF 98 (173)
Q Consensus 46 ~~~~~l~~L~~L~l~~n~l~~~~~-~~~~l~~L~~l~l~~~~~~~~p~-~-------------------------l~~l~ 98 (173)
..|.++++|++|++++|.++.+|. .+..+++|+.|++++|.+..+|. . +..++
T Consensus 106 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~ 185 (440)
T 3zyj_A 106 GAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLS 185 (440)
T ss_dssp GGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCS
T ss_pred hhccCCccCCEEECCCCcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhccc
Confidence 345666666666666666664444 35566666666666665554432 3 34455
Q ss_pred CccEEEecCCCCCCCC------cceEEEeeceeccccCCCCC-CCccccceeec------cccccccCCCCCcCEEEEec
Q 047314 99 NLQSLDLSSTLVDPIP------LLKHVCFNEFREMVVNPPVE-ASLPNLQKLIG------TEMVCSSGRFSHLQFLKLSN 165 (173)
Q Consensus 99 ~L~~L~l~~~~~~~lp------~L~~L~l~~n~~~~~~lp~~-~~l~~L~~L~l------~~~~~~l~~l~~L~~L~l~~ 165 (173)
+|+.|++++|.+..+| +|+.|++++|.+.+ ..|.. ..+++|+.|++ ...+..+.++++|+.|++++
T Consensus 186 ~L~~L~L~~n~l~~~~~~~~l~~L~~L~Ls~N~l~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 264 (440)
T 3zyj_A 186 NLRYLNLAMCNLREIPNLTPLIKLDELDLSGNHLSA-IRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAH 264 (440)
T ss_dssp SCCEEECTTSCCSSCCCCTTCSSCCEEECTTSCCCE-ECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTT
T ss_pred ccCeecCCCCcCccccccCCCcccCEEECCCCccCc-cChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCC
Confidence 5555555555544444 55666666666552 22333 55566666665 12233455666666666655
Q ss_pred ee
Q 047314 166 IR 167 (173)
Q Consensus 166 ~~ 167 (173)
+.
T Consensus 265 N~ 266 (440)
T 3zyj_A 265 NN 266 (440)
T ss_dssp SC
T ss_pred CC
Confidence 43
No 42
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.38 E-value=3.9e-12 Score=90.65 Aligned_cols=92 Identities=26% Similarity=0.311 Sum_probs=62.2
Q ss_pred CcccEEEecCcccccchhhhCCCCCCcEEeccCCcccccC-ccccCCCCccEEEecCCCCCCCC--------cceEEEee
Q 047314 52 RLLQVLDLEGVYMALLDSSVGNLIHLRYLDLRKTWLKKLP-SSMGNLFNLQSLDLSSTLVDPIP--------LLKHVCFN 122 (173)
Q Consensus 52 ~~L~~L~l~~n~l~~~~~~~~~l~~L~~l~l~~~~~~~~p-~~l~~l~~L~~L~l~~~~~~~lp--------~L~~L~l~ 122 (173)
++++.|++++|.++.+|..+..+++|+.|++++|.++.++ ..+..+++|+.|++++|.+..++ +|+.|+++
T Consensus 31 ~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~ 110 (193)
T 2wfh_A 31 RDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLH 110 (193)
T ss_dssp TTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECC
T ss_pred CCCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEECC
Confidence 4677777777777766666777777777777777777554 45677777777777777655443 67777777
Q ss_pred ceeccccCCCCC--CCccccceeec
Q 047314 123 EFREMVVNPPVE--ASLPNLQKLIG 145 (173)
Q Consensus 123 ~n~~~~~~lp~~--~~l~~L~~L~l 145 (173)
+|.+. .+|.. ..+++|+.|++
T Consensus 111 ~N~l~--~~~~~~~~~l~~L~~L~L 133 (193)
T 2wfh_A 111 GNDIS--VVPEGAFNDLSALSHLAI 133 (193)
T ss_dssp SSCCC--BCCTTTTTTCTTCCEEEC
T ss_pred CCCCC--eeChhhhhcCccccEEEe
Confidence 77776 45542 56666776666
No 43
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.38 E-value=1e-12 Score=108.04 Aligned_cols=99 Identities=23% Similarity=0.199 Sum_probs=48.3
Q ss_pred cccCCCcccEEEecCcccccc-hhhhCCCCCCcEEeccCCccccc-CccccCCCCccEEEecCCCCCCCC--------cc
Q 047314 47 LAKECRLLQVLDLEGVYMALL-DSSVGNLIHLRYLDLRKTWLKKL-PSSMGNLFNLQSLDLSSTLVDPIP--------LL 116 (173)
Q Consensus 47 ~~~~l~~L~~L~l~~n~l~~~-~~~~~~l~~L~~l~l~~~~~~~~-p~~l~~l~~L~~L~l~~~~~~~lp--------~L 116 (173)
.|.++++|++|++++|.++.+ |..+.++++|++|++++|.+..+ |..++.+++|++|++++|.+..++ +|
T Consensus 51 ~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 130 (606)
T 3vq2_A 51 SFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITL 130 (606)
T ss_dssp TTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTC
T ss_pred hccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhhcCCcccCCEEEccCCccccccccccCCCCCC
Confidence 344555555555555555532 33445555555555555555433 444555555555555555443322 45
Q ss_pred eEEEeeceeccccCCCCC-CCccccceeec
Q 047314 117 KHVCFNEFREMVVNPPVE-ASLPNLQKLIG 145 (173)
Q Consensus 117 ~~L~l~~n~~~~~~lp~~-~~l~~L~~L~l 145 (173)
+.|++++|.+.+..+|.. +++++|++|++
T Consensus 131 ~~L~L~~n~l~~~~lp~~~~~l~~L~~L~L 160 (606)
T 3vq2_A 131 KKLNVAHNFIHSCKLPAYFSNLTNLVHVDL 160 (606)
T ss_dssp CEEECCSSCCCCCCCCGGGGTCTTCCEEEC
T ss_pred CEEeCCCCcccceechHhHhhcCCCCEEEc
Confidence 555555555542233444 45555555554
No 44
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.38 E-value=1.4e-12 Score=107.12 Aligned_cols=108 Identities=19% Similarity=0.202 Sum_probs=91.1
Q ss_pred cccEEEecCcccccchhhhCCCCCCcEEeccCCcccccCccccCCCCccEEEecCCCCCCCC------cceEEEeeceec
Q 047314 53 LLQVLDLEGVYMALLDSSVGNLIHLRYLDLRKTWLKKLPSSMGNLFNLQSLDLSSTLVDPIP------LLKHVCFNEFRE 126 (173)
Q Consensus 53 ~L~~L~l~~n~l~~~~~~~~~l~~L~~l~l~~~~~~~~p~~l~~l~~L~~L~l~~~~~~~lp------~L~~L~l~~n~~ 126 (173)
.|+.|++++|.++.+|. ++.+++|+.|++++|.++.+|..++.+++|+.|++++|.+..+| +|+.|++++|.+
T Consensus 442 ~L~~L~Ls~n~l~~lp~-~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp~l~~l~~L~~L~Ls~N~l 520 (567)
T 1dce_A 442 DVRVLHLAHKDLTVLCH-LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVDGVANLPRLQELLLCNNRL 520 (567)
T ss_dssp TCSEEECTTSCCSSCCC-GGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCCCGGGTTCSSCCEEECCSSCC
T ss_pred CceEEEecCCCCCCCcC-ccccccCcEeecCcccccccchhhhcCCCCCEEECCCCCCCCCcccCCCCCCcEEECCCCCC
Confidence 48899999999998876 89999999999999999999999999999999999999887776 899999999999
Q ss_pred cccCC--CCC-CCccccceeec-----cccccc----cCCCCCcCEEEE
Q 047314 127 MVVNP--PVE-ASLPNLQKLIG-----TEMVCS----SGRFSHLQFLKL 163 (173)
Q Consensus 127 ~~~~l--p~~-~~l~~L~~L~l-----~~~~~~----l~~l~~L~~L~l 163 (173)
. .+ |.. +.+++|+.|++ ...|.. +..+++|+.|++
T Consensus 521 ~--~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 521 Q--QSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSILT 567 (567)
T ss_dssp C--SSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred C--CCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccCC
Confidence 8 45 777 89999999998 333333 234788888863
No 45
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.38 E-value=1.6e-12 Score=105.62 Aligned_cols=117 Identities=24% Similarity=0.243 Sum_probs=70.7
Q ss_pred cccCCCcccEEEecCccccc-chhhhCCCCCCcEEeccCCcccccCcc-ccCCCCccEEEecCCCCCCC--C-------c
Q 047314 47 LAKECRLLQVLDLEGVYMAL-LDSSVGNLIHLRYLDLRKTWLKKLPSS-MGNLFNLQSLDLSSTLVDPI--P-------L 115 (173)
Q Consensus 47 ~~~~l~~L~~L~l~~n~l~~-~~~~~~~l~~L~~l~l~~~~~~~~p~~-l~~l~~L~~L~l~~~~~~~l--p-------~ 115 (173)
.+..+++|++|++++|.++. .|..+..+++|++|++++|.+..+|+. ++.+++|++|++++|.+..+ | +
T Consensus 45 ~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~ 124 (549)
T 2z81_A 45 DLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTN 124 (549)
T ss_dssp TTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTT
T ss_pred hhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEECCCCcccccchhhhhhccCC
Confidence 46667777777777777763 334566777777777777776655543 66777777777777755432 1 6
Q ss_pred ceEEEeeceeccccCCCC-C-CCccccceeec------cccccccCCCCCcCEEEEe
Q 047314 116 LKHVCFNEFREMVVNPPV-E-ASLPNLQKLIG------TEMVCSSGRFSHLQFLKLS 164 (173)
Q Consensus 116 L~~L~l~~n~~~~~~lp~-~-~~l~~L~~L~l------~~~~~~l~~l~~L~~L~l~ 164 (173)
|+.|++++|.+.+ .+|. . +.+++|++|++ +..|..++.+++|+.|+++
T Consensus 125 L~~L~L~~n~~~~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~ 180 (549)
T 2z81_A 125 LQTLRIGNVETFS-EIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLH 180 (549)
T ss_dssp CCEEEEEESSSCC-EECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEE
T ss_pred ccEEECCCCcccc-ccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEecc
Confidence 6777777666332 4442 3 66666776666 2244445554444444443
No 46
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.37 E-value=2e-12 Score=103.46 Aligned_cols=99 Identities=24% Similarity=0.222 Sum_probs=59.1
Q ss_pred ccccCCCcccEEEecCccccc-chhhhCCCCCCcEEeccCCcccccCc-cccCCCCccEEEecCCCCCCC--------Cc
Q 047314 46 FLAKECRLLQVLDLEGVYMAL-LDSSVGNLIHLRYLDLRKTWLKKLPS-SMGNLFNLQSLDLSSTLVDPI--------PL 115 (173)
Q Consensus 46 ~~~~~l~~L~~L~l~~n~l~~-~~~~~~~l~~L~~l~l~~~~~~~~p~-~l~~l~~L~~L~l~~~~~~~l--------p~ 115 (173)
..|..+++|++|++++|.++. .|..+.++++|+.|++++|.++.+|. .+..+++|+.|++++|.+..+ ++
T Consensus 50 ~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~ 129 (477)
T 2id5_A 50 DEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYN 129 (477)
T ss_dssp TTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTT
T ss_pred hHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEECCCCccccCChhHcccccc
Confidence 356666777777777776663 35556666777777777666665554 346666666776666644332 25
Q ss_pred ceEEEeeceeccccCCCCC-CCccccceeec
Q 047314 116 LKHVCFNEFREMVVNPPVE-ASLPNLQKLIG 145 (173)
Q Consensus 116 L~~L~l~~n~~~~~~lp~~-~~l~~L~~L~l 145 (173)
|+.|++++|.+.. ..+.. +.+++|+.|++
T Consensus 130 L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~l 159 (477)
T 2id5_A 130 LKSLEVGDNDLVY-ISHRAFSGLNSLEQLTL 159 (477)
T ss_dssp CCEEEECCTTCCE-ECTTSSTTCTTCCEEEE
T ss_pred CCEEECCCCccce-eChhhccCCCCCCEEEC
Confidence 6666666665552 22333 55556666555
No 47
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.37 E-value=2.7e-12 Score=106.12 Aligned_cols=96 Identities=23% Similarity=0.216 Sum_probs=59.6
Q ss_pred ccccCCCcccEEEecCcccccchhhhCCCCCCcEEeccCCcccccCccccCCCCccEEEecCCCCCCCC------cceEE
Q 047314 46 FLAKECRLLQVLDLEGVYMALLDSSVGNLIHLRYLDLRKTWLKKLPSSMGNLFNLQSLDLSSTLVDPIP------LLKHV 119 (173)
Q Consensus 46 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~l~~L~~l~l~~~~~~~~p~~l~~l~~L~~L~l~~~~~~~lp------~L~~L 119 (173)
+.+..+++|+.|++++|.++.+++ +..+++|+.|++++|.+..+| .+..+++|+.|++++|.+..++ +|+.|
T Consensus 59 ~~l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~l~~l~-~l~~l~~L~~L~Ls~N~l~~l~~l~~l~~L~~L 136 (605)
T 1m9s_A 59 QGIQYLPNVTKLFLNGNKLTDIKP-LTNLKNLGWLFLDENKIKDLS-SLKDLKKLKSLSLEHNGISDINGLVHLPQLESL 136 (605)
T ss_dssp TTGGGCTTCCEEECTTSCCCCCGG-GGGCTTCCEEECCSSCCCCCT-TSTTCTTCCEEECTTSCCCCCGGGGGCTTCSEE
T ss_pred hHHccCCCCCEEEeeCCCCCCChh-hccCCCCCEEECcCCCCCCCh-hhccCCCCCEEEecCCCCCCCccccCCCccCEE
Confidence 446667777777777777775554 666777777777777666554 4666666666666666555543 56666
Q ss_pred EeeceeccccCCCCCCCccccceeec
Q 047314 120 CFNEFREMVVNPPVEASLPNLQKLIG 145 (173)
Q Consensus 120 ~l~~n~~~~~~lp~~~~l~~L~~L~l 145 (173)
++++|.+. .++..+.+++|+.|++
T Consensus 137 ~Ls~N~l~--~l~~l~~l~~L~~L~L 160 (605)
T 1m9s_A 137 YLGNNKIT--DITVLSRLTKLDTLSL 160 (605)
T ss_dssp ECCSSCCC--CCGGGGSCTTCSEEEC
T ss_pred ECCCCccC--CchhhcccCCCCEEEC
Confidence 66666655 3321155555555555
No 48
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.37 E-value=1.9e-12 Score=96.68 Aligned_cols=115 Identities=20% Similarity=0.190 Sum_probs=86.7
Q ss_pred CcccEEEecCcccccchh-hhCCCCCCcEEeccCCcccccC-ccccCCCCccEEEecCCCCCCCC--------cceEEEe
Q 047314 52 RLLQVLDLEGVYMALLDS-SVGNLIHLRYLDLRKTWLKKLP-SSMGNLFNLQSLDLSSTLVDPIP--------LLKHVCF 121 (173)
Q Consensus 52 ~~L~~L~l~~n~l~~~~~-~~~~l~~L~~l~l~~~~~~~~p-~~l~~l~~L~~L~l~~~~~~~lp--------~L~~L~l 121 (173)
++++.|++++|.++.++. .+.++++|+.|++++|.+..++ ..+..+++|+.|++++|.+..++ +|+.|++
T Consensus 28 ~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l 107 (276)
T 2z62_A 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA 107 (276)
T ss_dssp TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEEC
T ss_pred CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEEC
Confidence 358888888888885544 6778888888888888888665 46788888888888888654433 7888888
Q ss_pred eceeccccCCCC-C-CCccccceeec-----cc--cccccCCCCCcCEEEEeceee
Q 047314 122 NEFREMVVNPPV-E-ASLPNLQKLIG-----TE--MVCSSGRFSHLQFLKLSNIRV 168 (173)
Q Consensus 122 ~~n~~~~~~lp~-~-~~l~~L~~L~l-----~~--~~~~l~~l~~L~~L~l~~~~~ 168 (173)
++|.+. .++. . +.+++|++|++ .. +|..++.+++|+.|+++++..
T Consensus 108 ~~n~l~--~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l 161 (276)
T 2z62_A 108 VETNLA--SLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI 161 (276)
T ss_dssp TTSCCC--CSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCC
T ss_pred CCCCcc--ccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCC
Confidence 888887 5544 4 77888888888 22 567788888888888887653
No 49
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.36 E-value=2.7e-12 Score=98.22 Aligned_cols=114 Identities=18% Similarity=0.211 Sum_probs=80.7
Q ss_pred CcccEEEecCcccccchh-hhCCCCCCcEEeccCCccccc-CccccCCCCccEEEecCCCCCCCC-----cceEEEeece
Q 047314 52 RLLQVLDLEGVYMALLDS-SVGNLIHLRYLDLRKTWLKKL-PSSMGNLFNLQSLDLSSTLVDPIP-----LLKHVCFNEF 124 (173)
Q Consensus 52 ~~L~~L~l~~n~l~~~~~-~~~~l~~L~~l~l~~~~~~~~-p~~l~~l~~L~~L~l~~~~~~~lp-----~L~~L~l~~n 124 (173)
+.+++|++++|.++.++. .+.++++|++|++++|.++.+ |..++.+++|++|++++|.+..+| +|+.|++++|
T Consensus 52 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~~L~~L~l~~n 131 (330)
T 1xku_A 52 PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEKMPKTLQELRVHEN 131 (330)
T ss_dssp TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCSBCCSSCCTTCCEEECCSS
T ss_pred CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCcCCccChhhcccccEEECCCC
Confidence 567788888888775544 577788888888888877755 667778888888888888777666 6778888877
Q ss_pred eccccCCCC-C-CCccccceeec--------cccccccCCCCCcCEEEEecee
Q 047314 125 REMVVNPPV-E-ASLPNLQKLIG--------TEMVCSSGRFSHLQFLKLSNIR 167 (173)
Q Consensus 125 ~~~~~~lp~-~-~~l~~L~~L~l--------~~~~~~l~~l~~L~~L~l~~~~ 167 (173)
.+. .++. . +.+++|+.|++ +..+..+..+++|+.|+++++.
T Consensus 132 ~l~--~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~ 182 (330)
T 1xku_A 132 EIT--KVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTN 182 (330)
T ss_dssp CCC--BBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSC
T ss_pred ccc--ccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCc
Confidence 777 4443 3 66777777777 1234456667777777766544
No 50
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.36 E-value=3.4e-12 Score=98.56 Aligned_cols=115 Identities=18% Similarity=0.195 Sum_probs=99.1
Q ss_pred CcccEEEecCcccccchh-hhCCCCCCcEEeccCCccccc-CccccCCCCccEEEecCCCCCCCC--------cceEEEe
Q 047314 52 RLLQVLDLEGVYMALLDS-SVGNLIHLRYLDLRKTWLKKL-PSSMGNLFNLQSLDLSSTLVDPIP--------LLKHVCF 121 (173)
Q Consensus 52 ~~L~~L~l~~n~l~~~~~-~~~~l~~L~~l~l~~~~~~~~-p~~l~~l~~L~~L~l~~~~~~~lp--------~L~~L~l 121 (173)
++++.|++++|.++.+|. .+.++++|+.|++++|.++.+ |..++.+++|++|++++|.+..+| +|+.|++
T Consensus 52 ~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 131 (353)
T 2z80_A 52 EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNL 131 (353)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEEC
T ss_pred ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEEC
Confidence 589999999999996665 689999999999999999966 567899999999999999887776 8999999
Q ss_pred eceeccccCCCC--C-CCccccceeec------ccc-ccccCCCCCcCEEEEeceee
Q 047314 122 NEFREMVVNPPV--E-ASLPNLQKLIG------TEM-VCSSGRFSHLQFLKLSNIRV 168 (173)
Q Consensus 122 ~~n~~~~~~lp~--~-~~l~~L~~L~l------~~~-~~~l~~l~~L~~L~l~~~~~ 168 (173)
++|.+. .+|. . +.+++|++|++ ..+ +..+..+++|++|+++++..
T Consensus 132 ~~n~l~--~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l 186 (353)
T 2z80_A 132 LGNPYK--TLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDL 186 (353)
T ss_dssp TTCCCS--SSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTC
T ss_pred CCCCCc--ccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCc
Confidence 999999 7776 4 88999999998 222 45688999999999987653
No 51
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.35 E-value=9.6e-12 Score=89.20 Aligned_cols=98 Identities=26% Similarity=0.326 Sum_probs=82.5
Q ss_pred ccccCCCcccEEEecCcccccchhh-hCCCCCCcEEeccCCcccccCcc-ccCCCCccEEEecCCCCCCCC--------c
Q 047314 46 FLAKECRLLQVLDLEGVYMALLDSS-VGNLIHLRYLDLRKTWLKKLPSS-MGNLFNLQSLDLSSTLVDPIP--------L 115 (173)
Q Consensus 46 ~~~~~l~~L~~L~l~~n~l~~~~~~-~~~l~~L~~l~l~~~~~~~~p~~-l~~l~~L~~L~l~~~~~~~lp--------~ 115 (173)
..+..+++|++|++++|.++.+|.. +..+++|++|++++|.++.+|.. +..+++|+.|++++|.+..++ +
T Consensus 46 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~ 125 (208)
T 2o6s_A 46 GVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQ 125 (208)
T ss_dssp TTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTT
T ss_pred hhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCc
Confidence 4578899999999999999976665 67899999999999999977654 688999999999999776654 8
Q ss_pred ceEEEeeceeccccCCCCC--CCccccceeec
Q 047314 116 LKHVCFNEFREMVVNPPVE--ASLPNLQKLIG 145 (173)
Q Consensus 116 L~~L~l~~n~~~~~~lp~~--~~l~~L~~L~l 145 (173)
|+.|++++|.+. .++.. +.+++|+.|++
T Consensus 126 L~~L~l~~N~l~--~~~~~~~~~l~~L~~L~l 155 (208)
T 2o6s_A 126 LKDLRLYQNQLK--SVPDGVFDRLTSLQYIWL 155 (208)
T ss_dssp CCEEECCSSCCS--CCCTTTTTTCTTCCEEEC
T ss_pred CCEEECCCCccc--eeCHHHhccCCCccEEEe
Confidence 999999999998 56543 78889999887
No 52
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.35 E-value=5.1e-12 Score=103.82 Aligned_cols=115 Identities=20% Similarity=0.248 Sum_probs=100.3
Q ss_pred CcccEEEecCcccccch-hhhCCCCCCcEEeccCCccccc-CccccCCCCccEEEecCCCCCCC-C-------cceEEEe
Q 047314 52 RLLQVLDLEGVYMALLD-SSVGNLIHLRYLDLRKTWLKKL-PSSMGNLFNLQSLDLSSTLVDPI-P-------LLKHVCF 121 (173)
Q Consensus 52 ~~L~~L~l~~n~l~~~~-~~~~~l~~L~~l~l~~~~~~~~-p~~l~~l~~L~~L~l~~~~~~~l-p-------~L~~L~l 121 (173)
+++++|++++|.++.++ ..+.++++|+.|++++|.+..+ |..++.+++|++|++++|.+..+ | +|+.|++
T Consensus 32 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L 111 (606)
T 3vq2_A 32 SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVA 111 (606)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEEC
T ss_pred CCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhhcCCcccCCEEEc
Confidence 78999999999999554 4789999999999999999966 66789999999999999987666 3 8999999
Q ss_pred eceeccccCCC-CC-CCccccceeec-----c--ccccccCCCCCcCEEEEeceee
Q 047314 122 NEFREMVVNPP-VE-ASLPNLQKLIG-----T--EMVCSSGRFSHLQFLKLSNIRV 168 (173)
Q Consensus 122 ~~n~~~~~~lp-~~-~~l~~L~~L~l-----~--~~~~~l~~l~~L~~L~l~~~~~ 168 (173)
++|.+. .++ .. +.+++|++|++ . .+|..++++++|++|+++++..
T Consensus 112 ~~n~l~--~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l 165 (606)
T 3vq2_A 112 VETKLA--SLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYI 165 (606)
T ss_dssp TTSCCC--CSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCC
T ss_pred cCCccc--cccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcc
Confidence 999998 565 45 99999999999 2 4688899999999999998754
No 53
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.35 E-value=6.3e-12 Score=91.24 Aligned_cols=98 Identities=19% Similarity=0.183 Sum_probs=86.6
Q ss_pred ccccCCCcccEEEecCccccc-chhhhCCCCCCcEEeccCCcccccCcc-ccCCCCccEEEecCCCCCCCC--------c
Q 047314 46 FLAKECRLLQVLDLEGVYMAL-LDSSVGNLIHLRYLDLRKTWLKKLPSS-MGNLFNLQSLDLSSTLVDPIP--------L 115 (173)
Q Consensus 46 ~~~~~l~~L~~L~l~~n~l~~-~~~~~~~l~~L~~l~l~~~~~~~~p~~-l~~l~~L~~L~l~~~~~~~lp--------~ 115 (173)
..|..+++|+.|++++|.++. .|..+..+++|+.|++++|.++.+|.. +..+++|+.|++++|.+..++ +
T Consensus 50 ~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~ 129 (220)
T 2v9t_B 50 GAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHN 129 (220)
T ss_dssp TSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTT
T ss_pred hHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCC
Confidence 368899999999999999994 577899999999999999999988765 588999999999999877664 8
Q ss_pred ceEEEeeceeccccCCCC-C-CCccccceeec
Q 047314 116 LKHVCFNEFREMVVNPPV-E-ASLPNLQKLIG 145 (173)
Q Consensus 116 L~~L~l~~n~~~~~~lp~-~-~~l~~L~~L~l 145 (173)
|+.|++++|.+. .++. . ..+++|+.|++
T Consensus 130 L~~L~L~~N~l~--~~~~~~~~~l~~L~~L~L 159 (220)
T 2v9t_B 130 LNLLSLYDNKLQ--TIAKGTFSPLRAIQTMHL 159 (220)
T ss_dssp CCEEECCSSCCS--CCCTTTTTTCTTCCEEEC
T ss_pred CCEEECCCCcCC--EECHHHHhCCCCCCEEEe
Confidence 999999999999 5654 4 88999999998
No 54
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.34 E-value=6.2e-12 Score=100.67 Aligned_cols=116 Identities=24% Similarity=0.295 Sum_probs=98.8
Q ss_pred CcccEEEecCcccccc-hhhhCCCCCCcEEeccCCccccc-CccccCCCCccEEEecCCCCCCCC--------cceEEEe
Q 047314 52 RLLQVLDLEGVYMALL-DSSVGNLIHLRYLDLRKTWLKKL-PSSMGNLFNLQSLDLSSTLVDPIP--------LLKHVCF 121 (173)
Q Consensus 52 ~~L~~L~l~~n~l~~~-~~~~~~l~~L~~l~l~~~~~~~~-p~~l~~l~~L~~L~l~~~~~~~lp--------~L~~L~l 121 (173)
++++.|++++|.++.+ +..+.++++|+.|++++|.+..+ |..+..+++|+.|++++|.+..+| +|+.|++
T Consensus 32 ~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 111 (477)
T 2id5_A 32 TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDI 111 (477)
T ss_dssp TTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEEC
T ss_pred CCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEEC
Confidence 5899999999999954 56799999999999999999955 778999999999999999777665 8999999
Q ss_pred eceeccccCCCCC-CCccccceeec------cccccccCCCCCcCEEEEeceee
Q 047314 122 NEFREMVVNPPVE-ASLPNLQKLIG------TEMVCSSGRFSHLQFLKLSNIRV 168 (173)
Q Consensus 122 ~~n~~~~~~lp~~-~~l~~L~~L~l------~~~~~~l~~l~~L~~L~l~~~~~ 168 (173)
++|.+.. ..+.. +.+++|+.|++ ...+..+..+++|+.|+++++..
T Consensus 112 s~n~i~~-~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l 164 (477)
T 2id5_A 112 SENKIVI-LLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNL 164 (477)
T ss_dssp TTSCCCE-ECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCC
T ss_pred CCCcccc-CChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcC
Confidence 9999984 34555 89999999998 23355688999999999988754
No 55
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.34 E-value=7e-12 Score=91.52 Aligned_cols=112 Identities=23% Similarity=0.298 Sum_probs=96.8
Q ss_pred ccEEEecCcccccchhhhCCCCCCcEEeccCCccccc-CccccCCCCccEEEecCCCCCCCC--------cceEEEeece
Q 047314 54 LQVLDLEGVYMALLDSSVGNLIHLRYLDLRKTWLKKL-PSSMGNLFNLQSLDLSSTLVDPIP--------LLKHVCFNEF 124 (173)
Q Consensus 54 L~~L~l~~n~l~~~~~~~~~l~~L~~l~l~~~~~~~~-p~~l~~l~~L~~L~l~~~~~~~lp--------~L~~L~l~~n 124 (173)
-+.++.+++.++.+|..+. ++|+.|++++|.+..+ |..+..+++|+.|++++|.+..+| +|+.|++++|
T Consensus 21 ~~~v~c~~~~l~~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N 98 (229)
T 3e6j_A 21 GTTVDCRSKRHASVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTN 98 (229)
T ss_dssp TTEEECTTSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CCEeEccCCCcCccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCC
Confidence 5678999999998888664 8899999999999966 677899999999999999877765 8999999999
Q ss_pred eccccCCCCC--CCccccceeec-----cccccccCCCCCcCEEEEeceeee
Q 047314 125 REMVVNPPVE--ASLPNLQKLIG-----TEMVCSSGRFSHLQFLKLSNIRVE 169 (173)
Q Consensus 125 ~~~~~~lp~~--~~l~~L~~L~l-----~~~~~~l~~l~~L~~L~l~~~~~~ 169 (173)
.+. .++.. +.+++|+.|++ ..+|..+..+++|+.|++++....
T Consensus 99 ~l~--~l~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~l~ 148 (229)
T 3e6j_A 99 QLT--VLPSAVFDRLVHLKELFMCCNKLTELPRGIERLTHLTHLALDQNQLK 148 (229)
T ss_dssp CCC--CCCTTTTTTCTTCCEEECCSSCCCSCCTTGGGCTTCSEEECCSSCCC
T ss_pred cCC--ccChhHhCcchhhCeEeccCCcccccCcccccCCCCCEEECCCCcCC
Confidence 999 66654 88999999999 677888999999999999987543
No 56
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.34 E-value=1.7e-12 Score=111.15 Aligned_cols=120 Identities=18% Similarity=0.161 Sum_probs=100.9
Q ss_pred ccccCCCcccEEEecCccccc------------------chhhhC--CCCCCcEEeccCCccc-ccCccccCCCCccEEE
Q 047314 46 FLAKECRLLQVLDLEGVYMAL------------------LDSSVG--NLIHLRYLDLRKTWLK-KLPSSMGNLFNLQSLD 104 (173)
Q Consensus 46 ~~~~~l~~L~~L~l~~n~l~~------------------~~~~~~--~l~~L~~l~l~~~~~~-~~p~~l~~l~~L~~L~ 104 (173)
+.++++++|++|++++|.++. +|..++ ++++|+.|++++|.+. .+|..++.+++|+.|+
T Consensus 442 ~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~ 521 (876)
T 4ecn_A 442 KAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLN 521 (876)
T ss_dssp GGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEE
T ss_pred HHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEE
Confidence 458889999999999999986 888887 9999999999998866 8898999999999999
Q ss_pred ecCCC-CCC--CC--------------cceEEEeeceeccccCCCC--C-CCccccceeec-----cccccccCCCCCcC
Q 047314 105 LSSTL-VDP--IP--------------LLKHVCFNEFREMVVNPPV--E-ASLPNLQKLIG-----TEMVCSSGRFSHLQ 159 (173)
Q Consensus 105 l~~~~-~~~--lp--------------~L~~L~l~~n~~~~~~lp~--~-~~l~~L~~L~l-----~~~~~~l~~l~~L~ 159 (173)
+++|. +.. +| +|+.|++++|.+. .+|. . +.+++|+.|++ ..+| .++.+++|+
T Consensus 522 Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~--~ip~~~~l~~L~~L~~L~Ls~N~l~~lp-~~~~L~~L~ 598 (876)
T 4ecn_A 522 IACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE--EFPASASLQKMVKLGLLDCVHNKVRHLE-AFGTNVKLT 598 (876)
T ss_dssp CTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC--BCCCHHHHTTCTTCCEEECTTSCCCBCC-CCCTTSEES
T ss_pred CcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC--ccCChhhhhcCCCCCEEECCCCCcccch-hhcCCCcce
Confidence 99997 653 33 6899999999998 8888 6 88899999988 4566 777888888
Q ss_pred EEEEeceee
Q 047314 160 FLKLSNIRV 168 (173)
Q Consensus 160 ~L~l~~~~~ 168 (173)
.|+++++..
T Consensus 599 ~L~Ls~N~l 607 (876)
T 4ecn_A 599 DLKLDYNQI 607 (876)
T ss_dssp EEECCSSCC
T ss_pred EEECcCCcc
Confidence 888877653
No 57
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.34 E-value=4.3e-12 Score=99.17 Aligned_cols=118 Identities=15% Similarity=0.133 Sum_probs=72.4
Q ss_pred ccCCCcccEEEecCcccccch-hhhCCCCCCcEEeccCCcccccC-ccccCCCCccEEEecCCCCCCCC--------cce
Q 047314 48 AKECRLLQVLDLEGVYMALLD-SSVGNLIHLRYLDLRKTWLKKLP-SSMGNLFNLQSLDLSSTLVDPIP--------LLK 117 (173)
Q Consensus 48 ~~~l~~L~~L~l~~n~l~~~~-~~~~~l~~L~~l~l~~~~~~~~p-~~l~~l~~L~~L~l~~~~~~~lp--------~L~ 117 (173)
+..+++|++|++++|.++.++ ..+..+++|+.|++++|.+..+| ..++.+++|+.|++++|.+..+| +|+
T Consensus 65 ~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~ 144 (390)
T 3o6n_A 65 LDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLT 144 (390)
T ss_dssp HHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred hcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCccCcCCHHHhcCCCCCc
Confidence 566677777777777776433 35667777777777777776553 44667777777777777655544 667
Q ss_pred EEEeeceeccccCCCCC-CCccccceeec--ccc-ccccCCCCCcCEEEEece
Q 047314 118 HVCFNEFREMVVNPPVE-ASLPNLQKLIG--TEM-VCSSGRFSHLQFLKLSNI 166 (173)
Q Consensus 118 ~L~l~~n~~~~~~lp~~-~~l~~L~~L~l--~~~-~~~l~~l~~L~~L~l~~~ 166 (173)
.|++++|.+.+ ..+.. +.+++|+.|++ ..+ ...+..+++|+.|++++.
T Consensus 145 ~L~L~~n~l~~-~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~L~~L~l~~n 196 (390)
T 3o6n_A 145 TLSMSNNNLER-IEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYN 196 (390)
T ss_dssp EEECCSSCCCB-CCTTTTSSCTTCCEEECCSSCCSBCCGGGCTTCSEEECCSS
T ss_pred EEECCCCccCc-cChhhccCCCCCCEEECCCCcCCccccccccccceeecccc
Confidence 77777777762 22333 66677777776 111 112445555555555543
No 58
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.34 E-value=5e-12 Score=102.68 Aligned_cols=117 Identities=19% Similarity=0.198 Sum_probs=100.0
Q ss_pred CcccEEEecCccccc-chhhhCCCCCCcEEeccCCcccccC-ccccCCCCccEEEecCCCCCCCC--------cceEEEe
Q 047314 52 RLLQVLDLEGVYMAL-LDSSVGNLIHLRYLDLRKTWLKKLP-SSMGNLFNLQSLDLSSTLVDPIP--------LLKHVCF 121 (173)
Q Consensus 52 ~~L~~L~l~~n~l~~-~~~~~~~l~~L~~l~l~~~~~~~~p-~~l~~l~~L~~L~l~~~~~~~lp--------~L~~L~l 121 (173)
+++++|++++|.++. .|..+.++++|++|++++|.+..++ ..++.+++|++|++++|.+..++ +|++|++
T Consensus 26 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 105 (549)
T 2z81_A 26 AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNL 105 (549)
T ss_dssp TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEEC
T ss_pred CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEEC
Confidence 689999999999994 4677999999999999999999664 67899999999999999887766 8999999
Q ss_pred eceeccccCCCCC-CCccccceeec------cccc-cccCCCCCcCEEEEeceee
Q 047314 122 NEFREMVVNPPVE-ASLPNLQKLIG------TEMV-CSSGRFSHLQFLKLSNIRV 168 (173)
Q Consensus 122 ~~n~~~~~~lp~~-~~l~~L~~L~l------~~~~-~~l~~l~~L~~L~l~~~~~ 168 (173)
++|.+.+...|.. +.+++|++|++ +.+| ..+.++++|++|+++++..
T Consensus 106 s~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l 160 (549)
T 2z81_A 106 MGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSL 160 (549)
T ss_dssp TTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTC
T ss_pred CCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcc
Confidence 9999984334566 89999999998 3344 4688999999999987654
No 59
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.34 E-value=3.6e-12 Score=104.71 Aligned_cols=122 Identities=15% Similarity=0.045 Sum_probs=93.2
Q ss_pred ccccCCCcccEEEecCcccc-cchhhhCCCCCCcEEeccCCccccc-CccccCCCCccEEEecCCCCCCCC--------c
Q 047314 46 FLAKECRLLQVLDLEGVYMA-LLDSSVGNLIHLRYLDLRKTWLKKL-PSSMGNLFNLQSLDLSSTLVDPIP--------L 115 (173)
Q Consensus 46 ~~~~~l~~L~~L~l~~n~l~-~~~~~~~~l~~L~~l~l~~~~~~~~-p~~l~~l~~L~~L~l~~~~~~~lp--------~ 115 (173)
..|+++++|++|++++|.++ ..|..+.++++|+.|++++|.+..+ |..++.+++|++|++++|.+..++ +
T Consensus 51 ~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~~ 130 (606)
T 3t6q_A 51 TTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKT 130 (606)
T ss_dssp TTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEECTTSCCSCGGGSCCTTCTT
T ss_pred hHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhhhcccccccEeeccccCcccCCcchhccCCc
Confidence 46788889999999999888 4567788899999999998888744 677888899999999988766542 7
Q ss_pred ceEEEeeceeccccCCCCCCCccccceeec------cccccccCCCCCcC--EEEEecee
Q 047314 116 LKHVCFNEFREMVVNPPVEASLPNLQKLIG------TEMVCSSGRFSHLQ--FLKLSNIR 167 (173)
Q Consensus 116 L~~L~l~~n~~~~~~lp~~~~l~~L~~L~l------~~~~~~l~~l~~L~--~L~l~~~~ 167 (173)
|+.|++++|.+.+...|....+++|++|++ +..|..++.+++|+ .|+++++.
T Consensus 131 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l~~n~ 190 (606)
T 3t6q_A 131 LESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGND 190 (606)
T ss_dssp CCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHHTTTTCCSEEEECTTCC
T ss_pred ccEEECCCCcccccCcccccCCcccCEEEcccCcccccChhhhhhhcccceeEEecCCCc
Confidence 889999999888422344444888888888 22355577888888 77776654
No 60
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.34 E-value=5.4e-12 Score=100.23 Aligned_cols=117 Identities=21% Similarity=0.191 Sum_probs=96.5
Q ss_pred CCcccEEEecCcccc-cchhhhCCCCCCcEEeccCCccccc-CccccCCCCccEEEecCCCCCCCC--------cceEEE
Q 047314 51 CRLLQVLDLEGVYMA-LLDSSVGNLIHLRYLDLRKTWLKKL-PSSMGNLFNLQSLDLSSTLVDPIP--------LLKHVC 120 (173)
Q Consensus 51 l~~L~~L~l~~n~l~-~~~~~~~~l~~L~~l~l~~~~~~~~-p~~l~~l~~L~~L~l~~~~~~~lp--------~L~~L~ 120 (173)
.++|+.|++++|.++ ..|..+..+++|+.|++++|.+..+ |..++.+++|+.|++++|.+..++ +|+.|+
T Consensus 274 ~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 353 (455)
T 3v47_A 274 ASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLD 353 (455)
T ss_dssp TSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEE
T ss_pred ccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEE
Confidence 368999999999998 5677788999999999999999855 668889999999999999776553 899999
Q ss_pred eeceeccccCCCCC-CCccccceeec-----ccccc-ccCCCCCcCEEEEeceee
Q 047314 121 FNEFREMVVNPPVE-ASLPNLQKLIG-----TEMVC-SSGRFSHLQFLKLSNIRV 168 (173)
Q Consensus 121 l~~n~~~~~~lp~~-~~l~~L~~L~l-----~~~~~-~l~~l~~L~~L~l~~~~~ 168 (173)
+++|.+.+ ..|.. +.+++|++|++ ..+|. .+..+++|+.|+++++..
T Consensus 354 Ls~N~l~~-~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l 407 (455)
T 3v47_A 354 LSYNHIRA-LGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPW 407 (455)
T ss_dssp CCSSCCCE-ECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCB
T ss_pred CCCCcccc-cChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCc
Confidence 99999984 34666 88999999998 44444 468899999999987653
No 61
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.33 E-value=2.6e-12 Score=94.05 Aligned_cols=97 Identities=18% Similarity=0.105 Sum_probs=59.5
Q ss_pred cccCCCcccEEEecCcc-cccchh-hhCCCCCCcEEeccC-CcccccC-ccccCCCCccEEEecCCCCCCCC------cc
Q 047314 47 LAKECRLLQVLDLEGVY-MALLDS-SVGNLIHLRYLDLRK-TWLKKLP-SSMGNLFNLQSLDLSSTLVDPIP------LL 116 (173)
Q Consensus 47 ~~~~l~~L~~L~l~~n~-l~~~~~-~~~~l~~L~~l~l~~-~~~~~~p-~~l~~l~~L~~L~l~~~~~~~lp------~L 116 (173)
.|..+++|++|++++|. ++.+++ .+..+++|+.|++++ |.++.+| ..+..+++|+.|++++|.+..+| +|
T Consensus 50 ~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~l~~n~l~~lp~~~~l~~L 129 (239)
T 2xwt_C 50 AFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLKMFPDLTKVYST 129 (239)
T ss_dssp TTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEEEEEECCCSCCCCTTCCBC
T ss_pred HccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEeCCCCCCcccccccccccc
Confidence 46667777777777775 664444 466677777777766 6666554 34566667777777766555444 44
Q ss_pred e---EEEeece-eccccCCCC-C-CCccccc-eeec
Q 047314 117 K---HVCFNEF-REMVVNPPV-E-ASLPNLQ-KLIG 145 (173)
Q Consensus 117 ~---~L~l~~n-~~~~~~lp~-~-~~l~~L~-~L~l 145 (173)
+ .|++++| .+. .++. . +.+++|+ .|++
T Consensus 130 ~~L~~L~l~~N~~l~--~i~~~~~~~l~~L~~~L~l 163 (239)
T 2xwt_C 130 DIFFILEITDNPYMT--SIPVNAFQGLCNETLTLKL 163 (239)
T ss_dssp CSEEEEEEESCTTCC--EECTTTTTTTBSSEEEEEC
T ss_pred ccccEEECCCCcchh--hcCcccccchhcceeEEEc
Confidence 4 6666666 555 3433 2 5566666 6655
No 62
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.32 E-value=3.4e-12 Score=104.76 Aligned_cols=100 Identities=24% Similarity=0.201 Sum_probs=88.0
Q ss_pred ccccCCCcccEEEecCcccccchh-hhCCCCCCcEEeccCCcccccCc-cccCCCCccEEEecCCCCCCCC--------c
Q 047314 46 FLAKECRLLQVLDLEGVYMALLDS-SVGNLIHLRYLDLRKTWLKKLPS-SMGNLFNLQSLDLSSTLVDPIP--------L 115 (173)
Q Consensus 46 ~~~~~l~~L~~L~l~~n~l~~~~~-~~~~l~~L~~l~l~~~~~~~~p~-~l~~l~~L~~L~l~~~~~~~lp--------~ 115 (173)
..|.++++|++|++++|.++.+|+ .|.++++|++|++++|+++.+|. .|..+++|++|++++|.+..+| +
T Consensus 70 ~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~ 149 (635)
T 4g8a_A 70 YSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKT 149 (635)
T ss_dssp TTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEECTTSCCCCSTTCCCTTCTT
T ss_pred HHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEECCCCcCCCCChhhhhcCcc
Confidence 579999999999999999996655 58899999999999999998875 5799999999999999776665 8
Q ss_pred ceEEEeeceeccccCCCCC-CCccccceeec
Q 047314 116 LKHVCFNEFREMVVNPPVE-ASLPNLQKLIG 145 (173)
Q Consensus 116 L~~L~l~~n~~~~~~lp~~-~~l~~L~~L~l 145 (173)
|+.|++++|.+.....|.. +.+++|++|++
T Consensus 150 L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L 180 (635)
T 4g8a_A 150 LKELNVAHNLIQSFKLPEYFSNLTNLEHLDL 180 (635)
T ss_dssp CCEEECCSSCCCCCCCCGGGGGCTTCCEEEC
T ss_pred cCeeccccCccccCCCchhhccchhhhhhcc
Confidence 9999999999985445666 88999999998
No 63
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.32 E-value=4.2e-12 Score=103.39 Aligned_cols=99 Identities=25% Similarity=0.201 Sum_probs=62.5
Q ss_pred cccCCCcccEEEecCcccccc-hhhhCCCCCCcEEeccCCcccccC-ccccCCCCccEEEecCCCCCCCC--------cc
Q 047314 47 LAKECRLLQVLDLEGVYMALL-DSSVGNLIHLRYLDLRKTWLKKLP-SSMGNLFNLQSLDLSSTLVDPIP--------LL 116 (173)
Q Consensus 47 ~~~~l~~L~~L~l~~n~l~~~-~~~~~~l~~L~~l~l~~~~~~~~p-~~l~~l~~L~~L~l~~~~~~~lp--------~L 116 (173)
.|..+++|++|++++|.++.+ |..+.++++|++|++++|.+..+| ..++.+++|++|++++|.+..++ +|
T Consensus 47 ~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L 126 (570)
T 2z63_A 47 SFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTL 126 (570)
T ss_dssp TTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCSCTTCTTC
T ss_pred HhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCccccccccccccccccCCCccccccccc
Confidence 566667777777777766643 344666677777777776666443 45666677777777766554433 66
Q ss_pred eEEEeeceeccccCCCCC-CCccccceeec
Q 047314 117 KHVCFNEFREMVVNPPVE-ASLPNLQKLIG 145 (173)
Q Consensus 117 ~~L~l~~n~~~~~~lp~~-~~l~~L~~L~l 145 (173)
++|++++|.+.+..+|.. +++++|++|++
T Consensus 127 ~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l 156 (570)
T 2z63_A 127 KELNVAHNLIQSFKLPEYFSNLTNLEHLDL 156 (570)
T ss_dssp CEEECCSSCCCCCCCCGGGGGCTTCCEEEC
T ss_pred cEEecCCCccceecChhhhcccCCCCEEeC
Confidence 677777766663234555 66667777666
No 64
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.32 E-value=5.6e-12 Score=101.87 Aligned_cols=120 Identities=18% Similarity=0.142 Sum_probs=87.2
Q ss_pred ccccCCCcccEEEecCcccc---cchhhhCCCCCCcEEeccCCcccc-cCcc-ccCCCCccEEEecCCCCCC-----C-C
Q 047314 46 FLAKECRLLQVLDLEGVYMA---LLDSSVGNLIHLRYLDLRKTWLKK-LPSS-MGNLFNLQSLDLSSTLVDP-----I-P 114 (173)
Q Consensus 46 ~~~~~l~~L~~L~l~~n~l~---~~~~~~~~l~~L~~l~l~~~~~~~-~p~~-l~~l~~L~~L~l~~~~~~~-----l-p 114 (173)
..++.+++|+.|++++|.++ .+|..+..+++|+.|++++|.+.. +|.. +..+++|+.|++++|.+.. + +
T Consensus 342 ~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~ 421 (520)
T 2z7x_B 342 ENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLPP 421 (520)
T ss_dssp TTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSCCCGGGGGSCCT
T ss_pred hhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCccCCEEECcCCCCCcchhhhhcc
Confidence 44566777777777777776 344557777777777777777774 6654 5667777777777776532 2 2
Q ss_pred cceEEEeeceeccccCCCCC-CCccccceeec-----cccccc-cCCCCCcCEEEEecee
Q 047314 115 LLKHVCFNEFREMVVNPPVE-ASLPNLQKLIG-----TEMVCS-SGRFSHLQFLKLSNIR 167 (173)
Q Consensus 115 ~L~~L~l~~n~~~~~~lp~~-~~l~~L~~L~l-----~~~~~~-l~~l~~L~~L~l~~~~ 167 (173)
+|+.|++++|.+. .+|.. ..+++|++|++ ..+|.. +..+++|+.|+++++.
T Consensus 422 ~L~~L~Ls~N~l~--~ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~ 479 (520)
T 2z7x_B 422 RIKVLDLHSNKIK--SIPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTNP 479 (520)
T ss_dssp TCCEEECCSSCCC--CCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred cCCEEECCCCccc--ccchhhhcCCCCCEEECCCCcCCccCHHHhccCCcccEEECcCCC
Confidence 7888888888887 78877 78888888888 556665 7788888888888754
No 65
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.32 E-value=3.2e-12 Score=98.21 Aligned_cols=116 Identities=18% Similarity=0.239 Sum_probs=53.9
Q ss_pred ccCCCcccEEEecCcccccchhhhCCCCCCcEEeccCCcccccCccccCCCCccEEEecCCCCCCCC------cceEEEe
Q 047314 48 AKECRLLQVLDLEGVYMALLDSSVGNLIHLRYLDLRKTWLKKLPSSMGNLFNLQSLDLSSTLVDPIP------LLKHVCF 121 (173)
Q Consensus 48 ~~~l~~L~~L~l~~n~l~~~~~~~~~l~~L~~l~l~~~~~~~~p~~l~~l~~L~~L~l~~~~~~~lp------~L~~L~l 121 (173)
+..+++|+.|++++|.++..+. +..+++|+.|++++|.+..+ +.+..+++|+.|++++|.+..++ +|+.|++
T Consensus 217 ~~~~~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~L 294 (347)
T 4fmz_A 217 VANMTRLNSLKIGNNKITDLSP-LANLSQLTWLEIGTNQISDI-NAVKDLTKLKMLNVGSNQISDISVLNNLSQLNSLFL 294 (347)
T ss_dssp GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCC-GGGTTCTTCCEEECCSSCCCCCGGGGGCTTCSEEEC
T ss_pred hhcCCcCCEEEccCCccCCCcc-hhcCCCCCEEECCCCccCCC-hhHhcCCCcCEEEccCCccCCChhhcCCCCCCEEEC
Confidence 4444455555555555444333 44455555555555544433 23444555555555555444333 4555555
Q ss_pred eceeccccCCCCC-CCccccceeec-----cccccccCCCCCcCEEEEecee
Q 047314 122 NEFREMVVNPPVE-ASLPNLQKLIG-----TEMVCSSGRFSHLQFLKLSNIR 167 (173)
Q Consensus 122 ~~n~~~~~~lp~~-~~l~~L~~L~l-----~~~~~~l~~l~~L~~L~l~~~~ 167 (173)
++|.+.+ ..+.. +.+++|+.|++ ...+. +..+++|+.|+++++.
T Consensus 295 ~~n~l~~-~~~~~l~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~l~~N~ 344 (347)
T 4fmz_A 295 NNNQLGN-EDMEVIGGLTNLTTLFLSQNHITDIRP-LASLSKMDSADFANQV 344 (347)
T ss_dssp CSSCCCG-GGHHHHHTCTTCSEEECCSSSCCCCGG-GGGCTTCSEESSSCC-
T ss_pred cCCcCCC-cChhHhhccccCCEEEccCCccccccC-hhhhhccceeehhhhc
Confidence 5555442 22222 44555555555 11221 4455555555555543
No 66
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.32 E-value=9.9e-12 Score=95.49 Aligned_cols=118 Identities=17% Similarity=0.222 Sum_probs=83.5
Q ss_pred ccccCCCcccEEEecCcccccchhhhCCCCCCcEEeccCCcccccCccccCCCCccEEEecCCCCCCCC------cceEE
Q 047314 46 FLAKECRLLQVLDLEGVYMALLDSSVGNLIHLRYLDLRKTWLKKLPSSMGNLFNLQSLDLSSTLVDPIP------LLKHV 119 (173)
Q Consensus 46 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~l~~L~~l~l~~~~~~~~p~~l~~l~~L~~L~l~~~~~~~lp------~L~~L 119 (173)
+.+..+++|++|++++|.++.++. +..+++|+.|++++|.++.+| .+..+++|+.|++++|.+..++ +|+.+
T Consensus 60 ~~~~~~~~L~~L~l~~n~i~~~~~-~~~l~~L~~L~L~~n~i~~~~-~~~~l~~L~~L~l~~n~i~~~~~~~~l~~L~~L 137 (347)
T 4fmz_A 60 QGIEYLTNLEYLNLNGNQITDISP-LSNLVKLTNLYIGTNKITDIS-ALQNLTNLRELYLNEDNISDISPLANLTKMYSL 137 (347)
T ss_dssp TTGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCG-GGTTCTTCSEEECTTSCCCCCGGGTTCTTCCEE
T ss_pred hhhhhcCCccEEEccCCccccchh-hhcCCcCCEEEccCCcccCch-HHcCCCcCCEEECcCCcccCchhhccCCceeEE
Confidence 457778888888888888886666 778888888888888777664 5778888888888888766554 77888
Q ss_pred EeeceeccccCCCCC-CCccccceeec-----cccccccCCCCCcCEEEEeceee
Q 047314 120 CFNEFREMVVNPPVE-ASLPNLQKLIG-----TEMVCSSGRFSHLQFLKLSNIRV 168 (173)
Q Consensus 120 ~l~~n~~~~~~lp~~-~~l~~L~~L~l-----~~~~~~l~~l~~L~~L~l~~~~~ 168 (173)
++++|... ..+.. +.+++|++|++ ...+. +..+++|+.|+++++..
T Consensus 138 ~l~~n~~~--~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~l~~L~~L~l~~n~l 189 (347)
T 4fmz_A 138 NLGANHNL--SDLSPLSNMTGLNYLTVTESKVKDVTP-IANLTDLYSLSLNYNQI 189 (347)
T ss_dssp ECTTCTTC--CCCGGGTTCTTCCEEECCSSCCCCCGG-GGGCTTCSEEECTTSCC
T ss_pred ECCCCCCc--ccccchhhCCCCcEEEecCCCcCCchh-hccCCCCCEEEccCCcc
Confidence 88877544 23333 66777777776 22222 56667777777766543
No 67
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.31 E-value=6.9e-12 Score=97.36 Aligned_cols=116 Identities=22% Similarity=0.256 Sum_probs=81.9
Q ss_pred CcccEEEecCcccccchhh-hC-CCCCCcEEeccCCcccccC-ccccCCCCccEEEecCCCCCCCC--------cceEEE
Q 047314 52 RLLQVLDLEGVYMALLDSS-VG-NLIHLRYLDLRKTWLKKLP-SSMGNLFNLQSLDLSSTLVDPIP--------LLKHVC 120 (173)
Q Consensus 52 ~~L~~L~l~~n~l~~~~~~-~~-~l~~L~~l~l~~~~~~~~p-~~l~~l~~L~~L~l~~~~~~~lp--------~L~~L~ 120 (173)
..++.|++++|.++.++.. +. .+++|+.|++++|.+..++ ..+..+++|+.|++++|.+..++ +|+.|+
T Consensus 39 ~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 118 (361)
T 2xot_A 39 SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLL 118 (361)
T ss_dssp TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEE
T ss_pred CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCcCCcCCHHHhCCCcCCCEEE
Confidence 3477888888888855554 44 7888888888888888665 45788888888888888665443 788888
Q ss_pred eeceeccccCCCCC-CCccccceeec-----ccccccc----CCCCCcCEEEEeceee
Q 047314 121 FNEFREMVVNPPVE-ASLPNLQKLIG-----TEMVCSS----GRFSHLQFLKLSNIRV 168 (173)
Q Consensus 121 l~~n~~~~~~lp~~-~~l~~L~~L~l-----~~~~~~l----~~l~~L~~L~l~~~~~ 168 (173)
+++|.+.. ..+.. +.+++|+.|++ ..+|..+ ..+++|+.|++++...
T Consensus 119 L~~N~i~~-~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l 175 (361)
T 2xot_A 119 LYNNHIVV-VDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKL 175 (361)
T ss_dssp CCSSCCCE-ECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCC
T ss_pred CCCCcccE-ECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCC
Confidence 88888873 22444 77888888887 3445443 5678888888877543
No 68
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.31 E-value=3.8e-12 Score=88.35 Aligned_cols=97 Identities=28% Similarity=0.239 Sum_probs=85.7
Q ss_pred ccccCCCcccEEEecCcccccchhhhCCCCCCcEEeccCCcccc-cCccccCCCCccEEEecCCCCCCCC---------c
Q 047314 46 FLAKECRLLQVLDLEGVYMALLDSSVGNLIHLRYLDLRKTWLKK-LPSSMGNLFNLQSLDLSSTLVDPIP---------L 115 (173)
Q Consensus 46 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~l~~L~~l~l~~~~~~~-~p~~l~~l~~L~~L~l~~~~~~~lp---------~ 115 (173)
..+..+++|++|++++|.++.+ ..+..+++|+.|++++|.+.. +|..+..+++|+.|++++|.+..+| +
T Consensus 43 ~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~ 121 (168)
T 2ell_A 43 GLTAEFVNLEFLSLINVGLISV-SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLEC 121 (168)
T ss_dssp SCCGGGGGCCEEEEESSCCCCC-SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEECBSSSCCSSGGGGGGSSCSC
T ss_pred HHHHhCCCCCEEeCcCCCCCCh-hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEeccCCccCcchhHHHHhcCCC
Confidence 4568899999999999999976 778899999999999999996 6777778999999999999887754 8
Q ss_pred ceEEEeeceeccccCCCC----C-CCccccceeec
Q 047314 116 LKHVCFNEFREMVVNPPV----E-ASLPNLQKLIG 145 (173)
Q Consensus 116 L~~L~l~~n~~~~~~lp~----~-~~l~~L~~L~l 145 (173)
|+.|++++|.+. .+|. . ..+++|++|++
T Consensus 122 L~~L~l~~N~l~--~~~~~~~~~~~~l~~L~~L~l 154 (168)
T 2ell_A 122 LKSLDLFNCEVT--NLNDYRESVFKLLPQLTYLDG 154 (168)
T ss_dssp CCEEECCSSGGG--TSTTHHHHHHTTCSSCCEETT
T ss_pred CCEEEeeCCcCc--chHHHHHHHHHhCccCcEecC
Confidence 999999999999 6776 5 88999999998
No 69
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.31 E-value=1.2e-11 Score=96.68 Aligned_cols=117 Identities=16% Similarity=0.200 Sum_probs=78.7
Q ss_pred CCCcccEEEecCcccccchhh-hCCCCCCcEEeccCCcccccC-ccccCCCCccEEEecCCCCCCCC--------cceEE
Q 047314 50 ECRLLQVLDLEGVYMALLDSS-VGNLIHLRYLDLRKTWLKKLP-SSMGNLFNLQSLDLSSTLVDPIP--------LLKHV 119 (173)
Q Consensus 50 ~l~~L~~L~l~~n~l~~~~~~-~~~l~~L~~l~l~~~~~~~~p-~~l~~l~~L~~L~l~~~~~~~lp--------~L~~L 119 (173)
.+.+++++++.++.++.+|.. +..+++|+.|++++|.+..++ ..+..+++|+.|++++|.+..++ +|+.|
T Consensus 43 ~l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 122 (390)
T 3o6n_A 43 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVL 122 (390)
T ss_dssp GGCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred ccCCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEE
Confidence 356777777777777766655 456777777777777777554 46677777777777777655443 67777
Q ss_pred EeeceeccccCCCCC--CCccccceeec-----cc-cccccCCCCCcCEEEEeceee
Q 047314 120 CFNEFREMVVNPPVE--ASLPNLQKLIG-----TE-MVCSSGRFSHLQFLKLSNIRV 168 (173)
Q Consensus 120 ~l~~n~~~~~~lp~~--~~l~~L~~L~l-----~~-~~~~l~~l~~L~~L~l~~~~~ 168 (173)
++++|.+. .+|.. +.+++|++|++ .. .+..+..+++|+.|+++++..
T Consensus 123 ~L~~n~l~--~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l 177 (390)
T 3o6n_A 123 VLERNDLS--SLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRL 177 (390)
T ss_dssp ECCSSCCC--CCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCC
T ss_pred ECCCCccC--cCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcC
Confidence 77777777 56553 66777777777 22 234466777777777776543
No 70
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.31 E-value=1.1e-11 Score=99.14 Aligned_cols=116 Identities=17% Similarity=0.174 Sum_probs=88.9
Q ss_pred ccccCCCcccEEEecCcccccchhhhCCCCCCcEEeccCCcccccCccccCCCCccEEEecCCCCCCCC------cceEE
Q 047314 46 FLAKECRLLQVLDLEGVYMALLDSSVGNLIHLRYLDLRKTWLKKLPSSMGNLFNLQSLDLSSTLVDPIP------LLKHV 119 (173)
Q Consensus 46 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~l~~L~~l~l~~~~~~~~p~~l~~l~~L~~L~l~~~~~~~lp------~L~~L 119 (173)
+.+..+++|++|++++|.++.+++ +.++++|++|++++|.+..++. ++.+++|++|++++|.+..++ +|++|
T Consensus 62 ~~~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L 139 (466)
T 1o6v_A 62 DGVEYLNNLTQINFSNNQLTDITP-LKNLTKLVDILMNNNQIADITP-LANLTNLTGLTLFNNQITDIDPLKNLTNLNRL 139 (466)
T ss_dssp TTGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCGGGTTCTTCSEE
T ss_pred cchhhhcCCCEEECCCCccCCchh-hhccccCCEEECCCCccccChh-hcCCCCCCEEECCCCCCCCChHHcCCCCCCEE
Confidence 557889999999999999997776 8999999999999999987766 899999999999999776655 89999
Q ss_pred EeeceeccccCCCCCCCccccceeec----cccccccCCCCCcCEEEEece
Q 047314 120 CFNEFREMVVNPPVEASLPNLQKLIG----TEMVCSSGRFSHLQFLKLSNI 166 (173)
Q Consensus 120 ~l~~n~~~~~~lp~~~~l~~L~~L~l----~~~~~~l~~l~~L~~L~l~~~ 166 (173)
++++|.+. .++..+.+++|+.|++ ... ..+..+++|+.|+++++
T Consensus 140 ~l~~n~l~--~~~~~~~l~~L~~L~l~~~~~~~-~~~~~l~~L~~L~l~~n 187 (466)
T 1o6v_A 140 ELSSNTIS--DISALSGLTSLQQLSFGNQVTDL-KPLANLTTLERLDISSN 187 (466)
T ss_dssp EEEEEEEC--CCGGGTTCTTCSEEEEEESCCCC-GGGTTCTTCCEEECCSS
T ss_pred ECCCCccC--CChhhccCCcccEeecCCcccCc-hhhccCCCCCEEECcCC
Confidence 99999888 4543256666666665 111 12455555555555544
No 71
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.31 E-value=3.9e-12 Score=107.18 Aligned_cols=98 Identities=30% Similarity=0.288 Sum_probs=86.5
Q ss_pred ccccCCCcccEEEecCcccccchhhhCCCCCCcEEeccCCcccccCccccCCCCccEEEecCCCCCCCC-------cceE
Q 047314 46 FLAKECRLLQVLDLEGVYMALLDSSVGNLIHLRYLDLRKTWLKKLPSSMGNLFNLQSLDLSSTLVDPIP-------LLKH 118 (173)
Q Consensus 46 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~l~~L~~l~l~~~~~~~~p~~l~~l~~L~~L~l~~~~~~~lp-------~L~~ 118 (173)
+.+..+..|+.|++++|.+..+|..+..+++|+.|++++|.++.+|..++.+++|++|++++|.+..+| +|+.
T Consensus 218 ~~~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~ 297 (727)
T 4b8c_D 218 DSKYDDQLWHALDLSNLQIFNISANIFKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLTSLPAELGSCFQLKY 297 (727)
T ss_dssp ----CCCCCCEEECTTSCCSCCCGGGGGCCSCSCCBCTTSCCSCCCGGGGGGTTCCEEECTTSCCSSCCSSGGGGTTCSE
T ss_pred hhhccCCCCcEEECCCCCCCCCChhhcCCCCCCEEEeeCCcCcccChhhhCCCCCCEEeCcCCcCCccChhhcCCCCCCE
Confidence 457888999999999999998888888999999999999999999999999999999999999888887 8899
Q ss_pred EEeeceeccccCCCCC-CCccccceeec
Q 047314 119 VCFNEFREMVVNPPVE-ASLPNLQKLIG 145 (173)
Q Consensus 119 L~l~~n~~~~~~lp~~-~~l~~L~~L~l 145 (173)
|++++|.+. .+|.. +.+++|+.|++
T Consensus 298 L~L~~N~l~--~lp~~~~~l~~L~~L~L 323 (727)
T 4b8c_D 298 FYFFDNMVT--TLPWEFGNLCNLQFLGV 323 (727)
T ss_dssp EECCSSCCC--CCCSSTTSCTTCCCEEC
T ss_pred EECCCCCCC--ccChhhhcCCCccEEeC
Confidence 999999998 88888 89999999998
No 72
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.31 E-value=1.2e-11 Score=89.82 Aligned_cols=98 Identities=13% Similarity=0.142 Sum_probs=85.2
Q ss_pred cccCCCcccEEEecCcccccchh-hhCCCCCCcEEeccCCcccccCc-cccCCCCccEEEecCCCCCCCC--------cc
Q 047314 47 LAKECRLLQVLDLEGVYMALLDS-SVGNLIHLRYLDLRKTWLKKLPS-SMGNLFNLQSLDLSSTLVDPIP--------LL 116 (173)
Q Consensus 47 ~~~~l~~L~~L~l~~n~l~~~~~-~~~~l~~L~~l~l~~~~~~~~p~-~l~~l~~L~~L~l~~~~~~~lp--------~L 116 (173)
.|..+++|+.|++++|.++.+++ .+..+++|+.|++++|.++.++. .+..+++|+.|++++|.+..++ +|
T Consensus 52 ~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L 131 (220)
T 2v70_A 52 IFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSV 131 (220)
T ss_dssp CGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTC
T ss_pred hhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccC
Confidence 48899999999999999996554 78999999999999999997765 5889999999999999877653 89
Q ss_pred eEEEeeceeccccCCCCC-CCccccceeec
Q 047314 117 KHVCFNEFREMVVNPPVE-ASLPNLQKLIG 145 (173)
Q Consensus 117 ~~L~l~~n~~~~~~lp~~-~~l~~L~~L~l 145 (173)
+.|++++|.+.+ ..|.. +.+++|+.|++
T Consensus 132 ~~L~L~~N~l~~-~~~~~~~~l~~L~~L~L 160 (220)
T 2v70_A 132 RLLSLYDNQITT-VAPGAFDTLHSLSTLNL 160 (220)
T ss_dssp SEEECTTSCCCC-BCTTTTTTCTTCCEEEC
T ss_pred CEEECCCCcCCE-ECHHHhcCCCCCCEEEe
Confidence 999999999994 33556 88999999998
No 73
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.31 E-value=9.2e-12 Score=95.24 Aligned_cols=32 Identities=22% Similarity=0.213 Sum_probs=15.1
Q ss_pred CCccccceeec-----cccccccCCCCCcCEEEEece
Q 047314 135 ASLPNLQKLIG-----TEMVCSSGRFSHLQFLKLSNI 166 (173)
Q Consensus 135 ~~l~~L~~L~l-----~~~~~~l~~l~~L~~L~l~~~ 166 (173)
+.+++|+.|++ ..+|..+..+++|+.|+++++
T Consensus 237 ~~l~~L~~L~L~~N~l~~lp~~l~~l~~L~~L~l~~N 273 (330)
T 1xku_A 237 ANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNN 273 (330)
T ss_dssp GGSTTCCEEECCSSCCSSCCTTTTTCSSCCEEECCSS
T ss_pred cCCCCCCEEECCCCcCccCChhhccCCCcCEEECCCC
Confidence 44444444444 334444445555555555443
No 74
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.31 E-value=5e-12 Score=92.57 Aligned_cols=118 Identities=14% Similarity=0.169 Sum_probs=75.3
Q ss_pred cccCCCcccEEEecC-cccccchh-hhCCCCCCcEEeccCCcccccCccccCCCCcc---EEEecCC-CCCCCC------
Q 047314 47 LAKECRLLQVLDLEG-VYMALLDS-SVGNLIHLRYLDLRKTWLKKLPSSMGNLFNLQ---SLDLSST-LVDPIP------ 114 (173)
Q Consensus 47 ~~~~l~~L~~L~l~~-n~l~~~~~-~~~~l~~L~~l~l~~~~~~~~p~~l~~l~~L~---~L~l~~~-~~~~lp------ 114 (173)
.|.++++|++|++++ |.++.+++ .+..+++|+.|++++|.++.+|. ++.+++|+ .|++++| .+..+|
T Consensus 75 ~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~l~~n~l~~lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~ 153 (239)
T 2xwt_C 75 SFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLKMFPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQG 153 (239)
T ss_dssp TEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEEEEEECCCSCCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTT
T ss_pred HcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEeCCCCCCccccc-cccccccccccEEECCCCcchhhcCcccccc
Confidence 567777777777777 77775443 46677777777777777776665 66666666 7777777 554433
Q ss_pred --cce-EEEeeceeccccCCCCC-CCccccceeec------cccc-cccCCC-CCcCEEEEecee
Q 047314 115 --LLK-HVCFNEFREMVVNPPVE-ASLPNLQKLIG------TEMV-CSSGRF-SHLQFLKLSNIR 167 (173)
Q Consensus 115 --~L~-~L~l~~n~~~~~~lp~~-~~l~~L~~L~l------~~~~-~~l~~l-~~L~~L~l~~~~ 167 (173)
+|+ .+++++|.+. .+|.. ...++|+.|++ ..+| ..+..+ ++|+.|++++..
T Consensus 154 l~~L~~~L~l~~n~l~--~i~~~~~~~~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~ 216 (239)
T 2xwt_C 154 LCNETLTLKLYNNGFT--SVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTS 216 (239)
T ss_dssp TBSSEEEEECCSCCCC--EECTTTTTTCEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCC
T ss_pred hhcceeEEEcCCCCCc--ccCHhhcCCCCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCc
Confidence 566 7777777666 55544 22266777666 1222 335566 677777776643
No 75
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.31 E-value=2.6e-12 Score=98.02 Aligned_cols=118 Identities=14% Similarity=0.091 Sum_probs=90.5
Q ss_pred CCCcccEEEecCcccccch-hhhCCCCCCcEEeccCCccccc-Cccc-cCCCCccEEEecCCCCCCCC------cceEEE
Q 047314 50 ECRLLQVLDLEGVYMALLD-SSVGNLIHLRYLDLRKTWLKKL-PSSM-GNLFNLQSLDLSSTLVDPIP------LLKHVC 120 (173)
Q Consensus 50 ~l~~L~~L~l~~n~l~~~~-~~~~~l~~L~~l~l~~~~~~~~-p~~l-~~l~~L~~L~l~~~~~~~lp------~L~~L~ 120 (173)
.+++|+.|++++|.++.++ ..+..+++|+.|++++|.+... |..+ ..+++|+.|++++|.+..++ +|+.|+
T Consensus 118 ~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~l~~L~~L~ 197 (317)
T 3o53_A 118 RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQVVFAKLKTLD 197 (317)
T ss_dssp CCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEECCCCCTTCCEEE
T ss_pred ccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCcccccccccccCCEEE
Confidence 3566777777777777443 3577788889999988888854 4455 46788999999988765543 889999
Q ss_pred eeceeccccCCCCC-CCccccceeec-----cccccccCCCCCcCEEEEeceeee
Q 047314 121 FNEFREMVVNPPVE-ASLPNLQKLIG-----TEMVCSSGRFSHLQFLKLSNIRVE 169 (173)
Q Consensus 121 l~~n~~~~~~lp~~-~~l~~L~~L~l-----~~~~~~l~~l~~L~~L~l~~~~~~ 169 (173)
+++|.+. .+|.. ..+++|+.|++ ..+|..+..+++|+.|+++++...
T Consensus 198 Ls~N~l~--~l~~~~~~l~~L~~L~L~~N~l~~l~~~~~~l~~L~~L~l~~N~~~ 250 (317)
T 3o53_A 198 LSSNKLA--FMGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFH 250 (317)
T ss_dssp CCSSCCC--EECGGGGGGTTCSEEECTTSCCCEECTTCCCCTTCCEEECTTCCCB
T ss_pred CCCCcCC--cchhhhcccCcccEEECcCCcccchhhHhhcCCCCCEEEccCCCcc
Confidence 9999888 67766 78889999988 567777888899999998876543
No 76
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.30 E-value=1e-11 Score=102.27 Aligned_cols=118 Identities=15% Similarity=0.139 Sum_probs=82.4
Q ss_pred cccCCCcccEEEecCcccccc-hhhhCCCCCCcEEeccCCcccccC-ccccCCCCccEEEecCCCCCCCC--------cc
Q 047314 47 LAKECRLLQVLDLEGVYMALL-DSSVGNLIHLRYLDLRKTWLKKLP-SSMGNLFNLQSLDLSSTLVDPIP--------LL 116 (173)
Q Consensus 47 ~~~~l~~L~~L~l~~n~l~~~-~~~~~~l~~L~~l~l~~~~~~~~p-~~l~~l~~L~~L~l~~~~~~~lp--------~L 116 (173)
.+..+++|++|++++|.++.+ |..+..+++|+.|++++|.+..+| ..++.+++|++|++++|.+..+| +|
T Consensus 70 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L 149 (597)
T 3oja_B 70 LLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKL 149 (597)
T ss_dssp HHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred HHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCCCCCHHHhccCCCC
Confidence 466788888888888888844 446788888888888888888664 45688888888888888766655 78
Q ss_pred eEEEeeceeccccCCCCC-CCccccceeec--ccc-ccccCCCCCcCEEEEec
Q 047314 117 KHVCFNEFREMVVNPPVE-ASLPNLQKLIG--TEM-VCSSGRFSHLQFLKLSN 165 (173)
Q Consensus 117 ~~L~l~~n~~~~~~lp~~-~~l~~L~~L~l--~~~-~~~l~~l~~L~~L~l~~ 165 (173)
+.|++++|.+.+ ..|.. +.+++|+.|++ ..+ ...++.+++|+.|++++
T Consensus 150 ~~L~Ls~N~l~~-~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~L~l~~ 201 (597)
T 3oja_B 150 TTLSMSNNNLER-IEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSY 201 (597)
T ss_dssp CEEECCSSCCCB-CCTTTTTTCTTCCEEECTTSCCSBCCGGGCTTCSEEECCS
T ss_pred CEEEeeCCcCCC-CChhhhhcCCcCcEEECcCCCCCCcChhhhhhhhhhhccc
Confidence 888888888874 33444 77888888887 111 11234455555555544
No 77
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.30 E-value=2.7e-12 Score=103.56 Aligned_cols=118 Identities=14% Similarity=0.073 Sum_probs=93.5
Q ss_pred cCCCcccEEEecCccccc-chhhhCCCCCCcEEeccCCcccc-cCcccc-CCCCccEEEecCCCCCCCC------cceEE
Q 047314 49 KECRLLQVLDLEGVYMAL-LDSSVGNLIHLRYLDLRKTWLKK-LPSSMG-NLFNLQSLDLSSTLVDPIP------LLKHV 119 (173)
Q Consensus 49 ~~l~~L~~L~l~~n~l~~-~~~~~~~l~~L~~l~l~~~~~~~-~p~~l~-~l~~L~~L~l~~~~~~~lp------~L~~L 119 (173)
..+++|+.|++++|.++. .|..+..+++|+.|++++|.++. .|..+. .+++|+.|++++|.+..+| +|+.|
T Consensus 117 ~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~~~~~~l~~L~~L 196 (487)
T 3oja_A 117 SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQVVFAKLKTL 196 (487)
T ss_dssp CCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEECCCCCTTCCEE
T ss_pred cccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccccccccccCCCCCEE
Confidence 345677888888888874 45567888899999999998884 566664 6889999999999765543 88999
Q ss_pred EeeceeccccCCCCC-CCccccceeec-----cccccccCCCCCcCEEEEeceee
Q 047314 120 CFNEFREMVVNPPVE-ASLPNLQKLIG-----TEMVCSSGRFSHLQFLKLSNIRV 168 (173)
Q Consensus 120 ~l~~n~~~~~~lp~~-~~l~~L~~L~l-----~~~~~~l~~l~~L~~L~l~~~~~ 168 (173)
++++|.+. .+|.. +.+++|+.|++ ..+|..+..+++|+.|+++++..
T Consensus 197 ~Ls~N~l~--~~~~~~~~l~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~l~~N~l 249 (487)
T 3oja_A 197 DLSSNKLA--FMGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGF 249 (487)
T ss_dssp ECCSSCCC--EECGGGGGGTTCSEEECTTSCCCEECTTCCCCTTCCEEECTTCCB
T ss_pred ECCCCCCC--CCCHhHcCCCCccEEEecCCcCcccchhhccCCCCCEEEcCCCCC
Confidence 99999988 56666 88889999998 55787888899999999987654
No 78
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.30 E-value=1.1e-11 Score=101.83 Aligned_cols=122 Identities=20% Similarity=0.149 Sum_probs=79.8
Q ss_pred ccccCCCcccEEEecCcccccchhhhCCCCCCcEEeccCCccccc-CccccCCCCccEEEecCCCCC---------CCCc
Q 047314 46 FLAKECRLLQVLDLEGVYMALLDSSVGNLIHLRYLDLRKTWLKKL-PSSMGNLFNLQSLDLSSTLVD---------PIPL 115 (173)
Q Consensus 46 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~l~~L~~l~l~~~~~~~~-p~~l~~l~~L~~L~l~~~~~~---------~lp~ 115 (173)
..|..+++|+.|++++|.++.+|..+..+++|+.|++++|.+..+ |..+..+++|+.|++++|.+. .+++
T Consensus 272 ~~~~~l~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~ 351 (606)
T 3t6q_A 272 NTFHCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLEN 351 (606)
T ss_dssp TTTTTCTTCSEEECTTSCCSCCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTT
T ss_pred HHhccccCCCEEeccCCccCCCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhccCc
Confidence 347778888888888888888888888888888888888887754 556677777777777777432 2226
Q ss_pred ceEEEeeceeccccCC-CCC-CCccccceeec------cccccccCCCCCcCEEEEecee
Q 047314 116 LKHVCFNEFREMVVNP-PVE-ASLPNLQKLIG------TEMVCSSGRFSHLQFLKLSNIR 167 (173)
Q Consensus 116 L~~L~l~~n~~~~~~l-p~~-~~l~~L~~L~l------~~~~~~l~~l~~L~~L~l~~~~ 167 (173)
|+.|++++|.+.+... +.. +.+++|++|++ +..|..+..+++|+.|+++++.
T Consensus 352 L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 411 (606)
T 3t6q_A 352 LRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTR 411 (606)
T ss_dssp CCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCC
T ss_pred CCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCc
Confidence 6777777766653110 333 56666666666 1223445555555555555543
No 79
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.30 E-value=7.7e-12 Score=89.13 Aligned_cols=98 Identities=18% Similarity=0.138 Sum_probs=87.4
Q ss_pred ccccCCCcccEEEecCcccc-cchhhhCCCCCCcEEeccCCccc-ccCccccCCCCccEEEecCCC-CCCCC------cc
Q 047314 46 FLAKECRLLQVLDLEGVYMA-LLDSSVGNLIHLRYLDLRKTWLK-KLPSSMGNLFNLQSLDLSSTL-VDPIP------LL 116 (173)
Q Consensus 46 ~~~~~l~~L~~L~l~~n~l~-~~~~~~~~l~~L~~l~l~~~~~~-~~p~~l~~l~~L~~L~l~~~~-~~~lp------~L 116 (173)
+.+..+++|++|++++|.++ ..|..+..+++|+.|++++|.+. ..|..++.+++|+.|++++|. ++.+| +|
T Consensus 82 ~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~~l~~l~~L 161 (197)
T 4ezg_A 82 NPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIMPLKTLPEL 161 (197)
T ss_dssp GGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCGGGGGCSSC
T ss_pred hhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCccccHhhcCCCCC
Confidence 57889999999999999999 57888999999999999999998 567889999999999999997 87776 89
Q ss_pred eEEEeeceeccccCCCCCCCccccceeec
Q 047314 117 KHVCFNEFREMVVNPPVEASLPNLQKLIG 145 (173)
Q Consensus 117 ~~L~l~~n~~~~~~lp~~~~l~~L~~L~l 145 (173)
+.|++++|.+. .++....+++|+.|++
T Consensus 162 ~~L~l~~n~i~--~~~~l~~l~~L~~L~l 188 (197)
T 4ezg_A 162 KSLNIQFDGVH--DYRGIEDFPKLNQLYA 188 (197)
T ss_dssp CEEECTTBCCC--CCTTGGGCSSCCEEEE
T ss_pred CEEECCCCCCc--ChHHhccCCCCCEEEe
Confidence 99999999998 6663388899999987
No 80
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.29 E-value=1.1e-11 Score=102.96 Aligned_cols=94 Identities=13% Similarity=0.088 Sum_probs=42.5
Q ss_pred CCCcccEEEecCcccccchhhhC-CCCCCcEEeccCCcccccCccccC-C-------CCccEEEecCCCCCCCC------
Q 047314 50 ECRLLQVLDLEGVYMALLDSSVG-NLIHLRYLDLRKTWLKKLPSSMGN-L-------FNLQSLDLSSTLVDPIP------ 114 (173)
Q Consensus 50 ~l~~L~~L~l~~n~l~~~~~~~~-~l~~L~~l~l~~~~~~~~p~~l~~-l-------~~L~~L~l~~~~~~~lp------ 114 (173)
.+++|+.|++++|.++.+|..+. .+++|+.|++++|.++.+|..+.. . ++|+.|++++|.+..+|
T Consensus 431 ~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~~ 510 (636)
T 4eco_A 431 KGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRAT 510 (636)
T ss_dssp CCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCSBCCSSSSEETTEECTTGGGCCEEECCSSCCCBCCGGGSTT
T ss_pred cCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCCCcCHHHhccccccccccCCccEEECcCCcCCccChhhhhc
Confidence 34455555555555554444422 345555555555554444433211 1 14455555554433322
Q ss_pred ---cceEEEeeceeccccCCCCC-CCccccceeec
Q 047314 115 ---LLKHVCFNEFREMVVNPPVE-ASLPNLQKLIG 145 (173)
Q Consensus 115 ---~L~~L~l~~n~~~~~~lp~~-~~l~~L~~L~l 145 (173)
+|+.|++++|.+. .+|.. +.+++|+.|++
T Consensus 511 ~l~~L~~L~Ls~N~l~--~ip~~~~~l~~L~~L~L 543 (636)
T 4eco_A 511 TLPYLVGIDLSYNSFS--KFPTQPLNSSTLKGFGI 543 (636)
T ss_dssp TCTTCCEEECCSSCCS--SCCCGGGGCSSCCEEEC
T ss_pred cCCCcCEEECCCCCCC--CcChhhhcCCCCCEEEC
Confidence 3444555555444 34444 44444444443
No 81
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.29 E-value=1.2e-11 Score=100.76 Aligned_cols=115 Identities=19% Similarity=0.182 Sum_probs=98.8
Q ss_pred CcccEEEecCcccccc-hhhhCCCCCCcEEeccCCcccccC-ccccCCCCccEEEecCCCCCCCC--------cceEEEe
Q 047314 52 RLLQVLDLEGVYMALL-DSSVGNLIHLRYLDLRKTWLKKLP-SSMGNLFNLQSLDLSSTLVDPIP--------LLKHVCF 121 (173)
Q Consensus 52 ~~L~~L~l~~n~l~~~-~~~~~~l~~L~~l~l~~~~~~~~p-~~l~~l~~L~~L~l~~~~~~~lp--------~L~~L~l 121 (173)
++++.|++++|.++.+ +..+.++++|+.|++++|.+..++ ..++.+++|++|++++|.+..++ +|+.|++
T Consensus 28 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 107 (570)
T 2z63_A 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA 107 (570)
T ss_dssp SSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEEC
T ss_pred ccccEEEccCCccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCccccccccc
Confidence 5799999999999954 557899999999999999999764 56899999999999999765443 8999999
Q ss_pred eceeccccCCCC-C-CCccccceeec-----c--ccccccCCCCCcCEEEEeceee
Q 047314 122 NEFREMVVNPPV-E-ASLPNLQKLIG-----T--EMVCSSGRFSHLQFLKLSNIRV 168 (173)
Q Consensus 122 ~~n~~~~~~lp~-~-~~l~~L~~L~l-----~--~~~~~l~~l~~L~~L~l~~~~~ 168 (173)
++|.+. .++. . +.+++|++|++ . .+|..++++++|+.|+++++..
T Consensus 108 ~~n~l~--~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l 161 (570)
T 2z63_A 108 VETNLA--SLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI 161 (570)
T ss_dssp TTSCCC--CSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCC
T ss_pred cccccc--cCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCcc
Confidence 999998 6765 4 89999999999 2 3688899999999999988754
No 82
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.28 E-value=4.2e-12 Score=107.00 Aligned_cols=105 Identities=20% Similarity=0.169 Sum_probs=87.7
Q ss_pred cccccchhhhCCCCCCcEEeccCCcccccCccccCCCCccEEEecCCCCCCCC-------cceEEEeeceeccccCCCCC
Q 047314 62 VYMALLDSSVGNLIHLRYLDLRKTWLKKLPSSMGNLFNLQSLDLSSTLVDPIP-------LLKHVCFNEFREMVVNPPVE 134 (173)
Q Consensus 62 n~l~~~~~~~~~l~~L~~l~l~~~~~~~~p~~l~~l~~L~~L~l~~~~~~~lp-------~L~~L~l~~n~~~~~~lp~~ 134 (173)
|.+...+..+..+..|+.|++++|.+..+|..+..+++|+.|++++|.+..+| +|+.|++++|.+. .+|..
T Consensus 211 n~~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~--~lp~~ 288 (727)
T 4b8c_D 211 NRMVMPKDSKYDDQLWHALDLSNLQIFNISANIFKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLT--SLPAE 288 (727)
T ss_dssp -----------CCCCCCEEECTTSCCSCCCGGGGGCCSCSCCBCTTSCCSCCCGGGGGGTTCCEEECTTSCCS--SCCSS
T ss_pred cceecChhhhccCCCCcEEECCCCCCCCCChhhcCCCCCCEEEeeCCcCcccChhhhCCCCCCEEeCcCCcCC--ccChh
Confidence 33344466688899999999999999999999999999999999999988888 8999999999999 89988
Q ss_pred -CCccccceeec-----cccccccCCCCCcCEEEEeceee
Q 047314 135 -ASLPNLQKLIG-----TEMVCSSGRFSHLQFLKLSNIRV 168 (173)
Q Consensus 135 -~~l~~L~~L~l-----~~~~~~l~~l~~L~~L~l~~~~~ 168 (173)
+.+++|++|++ +.+|..++.+++|+.|+++++..
T Consensus 289 ~~~l~~L~~L~L~~N~l~~lp~~~~~l~~L~~L~L~~N~l 328 (727)
T 4b8c_D 289 LGSCFQLKYFYFFDNMVTTLPWEFGNLCNLQFLGVEGNPL 328 (727)
T ss_dssp GGGGTTCSEEECCSSCCCCCCSSTTSCTTCCCEECTTSCC
T ss_pred hcCCCCCCEEECCCCCCCccChhhhcCCCccEEeCCCCcc
Confidence 99999999999 67888899999999999998754
No 83
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.28 E-value=8.2e-12 Score=100.90 Aligned_cols=117 Identities=23% Similarity=0.156 Sum_probs=96.8
Q ss_pred CcccEEEecCcccccc-hhhhCCCCCCcEEeccCCccccc-CccccCCCCccEEEecCCCCCCCC-----cceEEEeece
Q 047314 52 RLLQVLDLEGVYMALL-DSSVGNLIHLRYLDLRKTWLKKL-PSSMGNLFNLQSLDLSSTLVDPIP-----LLKHVCFNEF 124 (173)
Q Consensus 52 ~~L~~L~l~~n~l~~~-~~~~~~l~~L~~l~l~~~~~~~~-p~~l~~l~~L~~L~l~~~~~~~lp-----~L~~L~l~~n 124 (173)
+++++|++++|.++.+ |..+.++++|++|++++|.++.+ |..++.+++|++|++++|.+..+| +|++|++++|
T Consensus 21 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~l~~L~~L~L~~N 100 (520)
T 2z7x_B 21 QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLVKISCHPTVNLKHLDLSFN 100 (520)
T ss_dssp TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCCEEECCCCCCCSEEECCSS
T ss_pred ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCceeecCccccCCccEEeccCC
Confidence 7899999999999954 46799999999999999999965 778999999999999999887665 8999999999
Q ss_pred eccccCCCCC-CCccccceeec--ccc-ccccCCCCCc--CEEEEeceee
Q 047314 125 REMVVNPPVE-ASLPNLQKLIG--TEM-VCSSGRFSHL--QFLKLSNIRV 168 (173)
Q Consensus 125 ~~~~~~lp~~-~~l~~L~~L~l--~~~-~~~l~~l~~L--~~L~l~~~~~ 168 (173)
.+.+..+|.. +.+++|++|++ ..+ ...+..+++| +.|+++++..
T Consensus 101 ~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~L~L~~L~l~~n~l 150 (520)
T 2z7x_B 101 AFDALPICKEFGNMSQLKFLGLSTTHLEKSSVLPIAHLNISKVLLVLGET 150 (520)
T ss_dssp CCSSCCCCGGGGGCTTCCEEEEEESSCCGGGGGGGTTSCEEEEEEEECTT
T ss_pred ccccccchhhhccCCcceEEEecCcccchhhccccccceeeEEEeecccc
Confidence 9984345667 89999999998 111 2346677777 8999887643
No 84
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.28 E-value=1.9e-11 Score=87.10 Aligned_cols=109 Identities=17% Similarity=0.163 Sum_probs=89.0
Q ss_pred cEEEecCcccccchhhhCCCCCCcEEeccCCcccccCccccCCCCccEEEecCCCCCCCC--------cceEEEeeceec
Q 047314 55 QVLDLEGVYMALLDSSVGNLIHLRYLDLRKTWLKKLPSSMGNLFNLQSLDLSSTLVDPIP--------LLKHVCFNEFRE 126 (173)
Q Consensus 55 ~~L~l~~n~l~~~~~~~~~l~~L~~l~l~~~~~~~~p~~l~~l~~L~~L~l~~~~~~~lp--------~L~~L~l~~n~~ 126 (173)
++++.+++.++.+|..+. .+++.|++++|.++.+|..+..+++|+.|++++|.+..++ +|+.|++++|.+
T Consensus 13 ~~l~~~~~~l~~ip~~~~--~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l 90 (193)
T 2wfh_A 13 TVVRCSNKGLKVLPKGIP--RDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRL 90 (193)
T ss_dssp TEEECTTSCCSSCCSCCC--TTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred CEEEcCCCCCCcCCCCCC--CCCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCcc
Confidence 578889998888887654 5799999999999988888899999999999999776655 789999999999
Q ss_pred cccCCCC-C-CCccccceeec-----ccccc-ccCCCCCcCEEEEecee
Q 047314 127 MVVNPPV-E-ASLPNLQKLIG-----TEMVC-SSGRFSHLQFLKLSNIR 167 (173)
Q Consensus 127 ~~~~lp~-~-~~l~~L~~L~l-----~~~~~-~l~~l~~L~~L~l~~~~ 167 (173)
. .++. . +.+++|+.|++ ..+|. .+..+++|+.|++++..
T Consensus 91 ~--~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~ 137 (193)
T 2wfh_A 91 R--CIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANP 137 (193)
T ss_dssp C--BCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSC
T ss_pred C--EeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCC
Confidence 8 5554 4 88899999998 44444 47788999999888753
No 85
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.28 E-value=1.3e-11 Score=101.74 Aligned_cols=118 Identities=16% Similarity=0.189 Sum_probs=101.0
Q ss_pred CCCcccEEEecCcccccchhh-hCCCCCCcEEeccCCcccccC-ccccCCCCccEEEecCCCCCCCC--------cceEE
Q 047314 50 ECRLLQVLDLEGVYMALLDSS-VGNLIHLRYLDLRKTWLKKLP-SSMGNLFNLQSLDLSSTLVDPIP--------LLKHV 119 (173)
Q Consensus 50 ~l~~L~~L~l~~n~l~~~~~~-~~~l~~L~~l~l~~~~~~~~p-~~l~~l~~L~~L~l~~~~~~~lp--------~L~~L 119 (173)
.+.+++.+++.+|.++.+|+. +..+++|+.|++++|.+..++ ..++.+++|+.|++++|.+..+| +|+.|
T Consensus 49 ~l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 128 (597)
T 3oja_B 49 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVL 128 (597)
T ss_dssp GGCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred cCCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEE
Confidence 467899999999999977776 578999999999999999665 58899999999999999776655 89999
Q ss_pred EeeceeccccCCCCC--CCccccceeec------cccccccCCCCCcCEEEEeceeee
Q 047314 120 CFNEFREMVVNPPVE--ASLPNLQKLIG------TEMVCSSGRFSHLQFLKLSNIRVE 169 (173)
Q Consensus 120 ~l~~n~~~~~~lp~~--~~l~~L~~L~l------~~~~~~l~~l~~L~~L~l~~~~~~ 169 (173)
++++|.+. .+|.. +.+++|++|++ +..|..++.+++|+.|+++++...
T Consensus 129 ~L~~n~l~--~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 184 (597)
T 3oja_B 129 VLERNDLS--SLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLT 184 (597)
T ss_dssp ECCSSCCC--CCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCS
T ss_pred EeeCCCCC--CCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCC
Confidence 99999999 67764 88999999999 334556899999999999987543
No 86
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.28 E-value=1.7e-11 Score=93.88 Aligned_cols=112 Identities=22% Similarity=0.234 Sum_probs=82.2
Q ss_pred CcccEEEecCcccccc-hhhhCCCCCCcEEeccCCccccc-CccccCCCCccEEEecCCCCCCCC-----cceEEEeece
Q 047314 52 RLLQVLDLEGVYMALL-DSSVGNLIHLRYLDLRKTWLKKL-PSSMGNLFNLQSLDLSSTLVDPIP-----LLKHVCFNEF 124 (173)
Q Consensus 52 ~~L~~L~l~~n~l~~~-~~~~~~l~~L~~l~l~~~~~~~~-p~~l~~l~~L~~L~l~~~~~~~lp-----~L~~L~l~~n 124 (173)
+++++|++++|.++.+ |..+.++++|+.|++++|.++.+ |..++.+++|+.|++++|.+..+| +|+.|++++|
T Consensus 54 ~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~L~~L~l~~n 133 (332)
T 2ft3_A 54 PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLVEIPPNLPSSLVELRIHDN 133 (332)
T ss_dssp TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSCCCSCCSSCCTTCCEEECCSS
T ss_pred CCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCCcCCccCccccccCCEEECCCC
Confidence 5788888888888854 44688888888888888888855 667888888888888888877776 7888888888
Q ss_pred eccccCCCCC--CCccccceeec-----c---ccccccCCCCCcCEEEEece
Q 047314 125 REMVVNPPVE--ASLPNLQKLIG-----T---EMVCSSGRFSHLQFLKLSNI 166 (173)
Q Consensus 125 ~~~~~~lp~~--~~l~~L~~L~l-----~---~~~~~l~~l~~L~~L~l~~~ 166 (173)
.+. .++.. +.+++|+.|++ . ..+..+..+ +|+.|+++++
T Consensus 134 ~i~--~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n 182 (332)
T 2ft3_A 134 RIR--KVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEA 182 (332)
T ss_dssp CCC--CCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSS
T ss_pred ccC--ccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCC
Confidence 887 56553 77888888887 1 224445544 5555555544
No 87
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.28 E-value=2.4e-12 Score=87.67 Aligned_cols=97 Identities=24% Similarity=0.221 Sum_probs=84.5
Q ss_pred ccccCCCcccEEEecCcccccchhhhCCCCCCcEEeccCCcccc-cCccccCCCCccEEEecCCCCCCCC---------c
Q 047314 46 FLAKECRLLQVLDLEGVYMALLDSSVGNLIHLRYLDLRKTWLKK-LPSSMGNLFNLQSLDLSSTLVDPIP---------L 115 (173)
Q Consensus 46 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~l~~L~~l~l~~~~~~~-~p~~l~~l~~L~~L~l~~~~~~~lp---------~ 115 (173)
+.+..+++|+.|++++|.++.+ ..+..+++|+.|++++|.++. +|..+..+++|+.|++++|.+..++ +
T Consensus 36 ~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ls~N~i~~~~~~~~~~~l~~ 114 (149)
T 2je0_A 36 GLTDEFEELEFLSTINVGLTSI-ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLEN 114 (149)
T ss_dssp SCCTTCTTCCEEECTTSCCCCC-TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEECTTSCCCSHHHHGGGGGCTT
T ss_pred HHHhhcCCCcEEECcCCCCCCc-hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEECCCCcCCChHHHHHHhhCCC
Confidence 4578899999999999999976 778899999999999999996 7777778999999999999887643 8
Q ss_pred ceEEEeeceeccccCCCC----C-CCccccceeec
Q 047314 116 LKHVCFNEFREMVVNPPV----E-ASLPNLQKLIG 145 (173)
Q Consensus 116 L~~L~l~~n~~~~~~lp~----~-~~l~~L~~L~l 145 (173)
|+.|++++|.+. .++. . +.+++|+.|++
T Consensus 115 L~~L~l~~N~l~--~~~~~~~~~~~~l~~L~~L~l 147 (149)
T 2je0_A 115 LKSLDLFNCEVT--NLNDYRENVFKLLPQLTYLDG 147 (149)
T ss_dssp CCEEECTTCGGG--GSTTHHHHHHHHCTTCCEETT
T ss_pred CCEEeCcCCccc--chHHHHHHHHHHCCCcccccC
Confidence 999999999999 5665 4 78899998875
No 88
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.27 E-value=9.9e-12 Score=103.44 Aligned_cols=120 Identities=23% Similarity=0.137 Sum_probs=76.9
Q ss_pred cccCCCcccEEEecCcccc-cchhhhCCCCCCcEEeccCCcccccCc-cccCCCCccEEEecCCCCCCCC--------cc
Q 047314 47 LAKECRLLQVLDLEGVYMA-LLDSSVGNLIHLRYLDLRKTWLKKLPS-SMGNLFNLQSLDLSSTLVDPIP--------LL 116 (173)
Q Consensus 47 ~~~~l~~L~~L~l~~n~l~-~~~~~~~~l~~L~~l~l~~~~~~~~p~-~l~~l~~L~~L~l~~~~~~~lp--------~L 116 (173)
.|+++++|++|++++|.++ ..|..+.++++|++|++++|.++.+|. .++.+++|++|++++|.+..++ +|
T Consensus 44 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 123 (680)
T 1ziw_A 44 NFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNL 123 (680)
T ss_dssp GGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTC
T ss_pred HHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChhhhccCCCCCEEECCCCccCccChhHccccCCC
Confidence 4667777777777777777 345556677777777777777776665 4677777777777777555443 67
Q ss_pred eEEEeeceeccccCCCCC-CCccccceeec-----ccc-cccc--CCCCCcCEEEEecee
Q 047314 117 KHVCFNEFREMVVNPPVE-ASLPNLQKLIG-----TEM-VCSS--GRFSHLQFLKLSNIR 167 (173)
Q Consensus 117 ~~L~l~~n~~~~~~lp~~-~~l~~L~~L~l-----~~~-~~~l--~~l~~L~~L~l~~~~ 167 (173)
++|++++|.+.+ ..|.. +.+++|++|++ ... +..+ ..+++|+.|+++++.
T Consensus 124 ~~L~Ls~n~l~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~ 182 (680)
T 1ziw_A 124 ITLDLSHNGLSS-TKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQ 182 (680)
T ss_dssp CEEECCSSCCSC-CCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCC
T ss_pred CEEECCCCcccc-cCchhhcccccCCEEEccCCcccccCHHHhhccccccccEEECCCCc
Confidence 777777777763 33444 66777777776 111 2222 234667777766553
No 89
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.27 E-value=5.2e-12 Score=101.85 Aligned_cols=115 Identities=16% Similarity=0.120 Sum_probs=68.8
Q ss_pred cccCCCcccEEEecCcccccchhhhCCCCCCcEEeccCCcccccCccccCCCCccEEEecCCCCCCCC-----cceEEEe
Q 047314 47 LAKECRLLQVLDLEGVYMALLDSSVGNLIHLRYLDLRKTWLKKLPSSMGNLFNLQSLDLSSTLVDPIP-----LLKHVCF 121 (173)
Q Consensus 47 ~~~~l~~L~~L~l~~n~l~~~~~~~~~l~~L~~l~l~~~~~~~~p~~l~~l~~L~~L~l~~~~~~~lp-----~L~~L~l 121 (173)
.++.+++|++|++++|.++..++ +..+++|+.|++++|.++.+|. .++|+.|++++|.+..++ +|+.|++
T Consensus 53 ~~~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~l~~l~~----~~~L~~L~L~~N~l~~~~~~~l~~L~~L~L 127 (487)
T 3oja_A 53 DLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNYVQELLV----GPSIETLHAANNNISRVSCSRGQGKKNIYL 127 (487)
T ss_dssp GGTTCTTCCEEECTTSCCEEEEE-CTTCTTCCEEECCSSEEEEEEE----CTTCCEEECCSSCCCCEEECCCSSCEEEEC
T ss_pred HHhCCCCCCEEEeeCCCCCCCcc-cccCCCCCEEEecCCcCCCCCC----CCCcCEEECcCCcCCCCCccccCCCCEEEC
Confidence 56667777777777777664333 6666777777777766665442 245555566555554432 6677777
Q ss_pred eceeccccCCCCC-CCccccceeec------cccccccC-CCCCcCEEEEecee
Q 047314 122 NEFREMVVNPPVE-ASLPNLQKLIG------TEMVCSSG-RFSHLQFLKLSNIR 167 (173)
Q Consensus 122 ~~n~~~~~~lp~~-~~l~~L~~L~l------~~~~~~l~-~l~~L~~L~l~~~~ 167 (173)
++|.+.+ ..|.. +.+++|+.|++ +..|..+. .+++|+.|+++++.
T Consensus 128 ~~N~l~~-~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~ 180 (487)
T 3oja_A 128 ANNKITM-LRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNF 180 (487)
T ss_dssp CSSCCCS-GGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSC
T ss_pred CCCCCCC-CCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCc
Confidence 7777663 22334 66677777776 22344443 56666666666654
No 90
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.27 E-value=2.8e-11 Score=100.01 Aligned_cols=120 Identities=20% Similarity=0.196 Sum_probs=100.7
Q ss_pred ccccCCCcccEEEecCcccccchhhhCCCCCCcEEeccCCcccccCccccCCCCccEEEecCCCCCCCC------cceEE
Q 047314 46 FLAKECRLLQVLDLEGVYMALLDSSVGNLIHLRYLDLRKTWLKKLPSSMGNLFNLQSLDLSSTLVDPIP------LLKHV 119 (173)
Q Consensus 46 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~l~~L~~l~l~~~~~~~~p~~l~~l~~L~~L~l~~~~~~~lp------~L~~L 119 (173)
+.+..+++|+.|++++|.++.+| .+..+++|+.|++++|.+..+ +.+..+++|+.|++++|.+..++ +|+.|
T Consensus 81 ~~l~~l~~L~~L~Ls~N~l~~l~-~l~~l~~L~~L~Ls~N~l~~l-~~l~~l~~L~~L~Ls~N~l~~l~~l~~l~~L~~L 158 (605)
T 1m9s_A 81 KPLTNLKNLGWLFLDENKIKDLS-SLKDLKKLKSLSLEHNGISDI-NGLVHLPQLESLYLGNNKITDITVLSRLTKLDTL 158 (605)
T ss_dssp GGGGGCTTCCEEECCSSCCCCCT-TSTTCTTCCEEECTTSCCCCC-GGGGGCTTCSEEECCSSCCCCCGGGGSCTTCSEE
T ss_pred hhhccCCCCCEEECcCCCCCCCh-hhccCCCCCEEEecCCCCCCC-ccccCCCccCEEECCCCccCCchhhcccCCCCEE
Confidence 44889999999999999998765 688999999999999998876 45889999999999999876655 89999
Q ss_pred EeeceeccccCCCCCCCccccceeec-----cccccccCCCCCcCEEEEeceeeec
Q 047314 120 CFNEFREMVVNPPVEASLPNLQKLIG-----TEMVCSSGRFSHLQFLKLSNIRVEE 170 (173)
Q Consensus 120 ~l~~n~~~~~~lp~~~~l~~L~~L~l-----~~~~~~l~~l~~L~~L~l~~~~~~~ 170 (173)
++++|.+. .++....+++|+.|++ ..+ ..+..+++|+.|+++++....
T Consensus 159 ~Ls~N~l~--~~~~l~~l~~L~~L~Ls~N~i~~l-~~l~~l~~L~~L~L~~N~l~~ 211 (605)
T 1m9s_A 159 SLEDNQIS--DIVPLAGLTKLQNLYLSKNHISDL-RALAGLKNLDVLELFSQECLN 211 (605)
T ss_dssp ECCSSCCC--CCGGGTTCTTCCEEECCSSCCCBC-GGGTTCTTCSEEECCSEEEEC
T ss_pred ECcCCcCC--CchhhccCCCCCEEECcCCCCCCC-hHHccCCCCCEEEccCCcCcC
Confidence 99999998 4433577899999999 333 358899999999999876543
No 91
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.27 E-value=4.6e-14 Score=100.86 Aligned_cols=118 Identities=18% Similarity=0.176 Sum_probs=97.7
Q ss_pred cccCCCcccEEEecCcccccchhhhCCCCCCcEEeccCCcccccCccccCCCCccEEEecCCCCCCCC------cceEEE
Q 047314 47 LAKECRLLQVLDLEGVYMALLDSSVGNLIHLRYLDLRKTWLKKLPSSMGNLFNLQSLDLSSTLVDPIP------LLKHVC 120 (173)
Q Consensus 47 ~~~~l~~L~~L~l~~n~l~~~~~~~~~l~~L~~l~l~~~~~~~~p~~l~~l~~L~~L~l~~~~~~~lp------~L~~L~ 120 (173)
.+..+++|++|++++|.++.+| .+..+++|+.|++++|.++.+|..+..+++|+.|++++|.+..+| +|+.|+
T Consensus 43 ~~~~l~~L~~L~ls~n~l~~l~-~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~N~l~~l~~~~~l~~L~~L~ 121 (198)
T 1ds9_A 43 TLSTLKACKHLALSTNNIEKIS-SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQIASLSGIEKLVNLRVLY 121 (198)
T ss_dssp HHHHTTTCSEEECSEEEESCCC-CHHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEEEEEEECCCHHHHHHHHHSSEEE
T ss_pred HHhcCCCCCEEECCCCCCcccc-ccccCCCCCEEECCCCCcccccchhhcCCcCCEEECcCCcCCcCCccccCCCCCEEE
Confidence 6788999999999999999877 888899999999999999988887788899999999999888776 899999
Q ss_pred eeceeccccCCCC--C-CCccccceeec------ccccc----------ccCCCCCcCEEEEecee
Q 047314 121 FNEFREMVVNPPV--E-ASLPNLQKLIG------TEMVC----------SSGRFSHLQFLKLSNIR 167 (173)
Q Consensus 121 l~~n~~~~~~lp~--~-~~l~~L~~L~l------~~~~~----------~l~~l~~L~~L~l~~~~ 167 (173)
+++|.+. .++. . ..+++|++|++ +..|. .+..+++|+.|+-..+.
T Consensus 122 l~~N~i~--~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld~~~i~ 185 (198)
T 1ds9_A 122 MSNNKIT--NWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLDGMPVD 185 (198)
T ss_dssp ESEEECC--CHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEECCGGGT
T ss_pred CCCCcCC--chhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEECCcccC
Confidence 9999998 5544 4 78899999998 22222 27789999988744443
No 92
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.27 E-value=2.2e-11 Score=99.50 Aligned_cols=120 Identities=22% Similarity=0.190 Sum_probs=82.1
Q ss_pred ccccCCCcccEEEecCcccccc---hhhhCCCCCCcEEeccCCcccc-cCcc-ccCCCCccEEEecCCCCCC-----C-C
Q 047314 46 FLAKECRLLQVLDLEGVYMALL---DSSVGNLIHLRYLDLRKTWLKK-LPSS-MGNLFNLQSLDLSSTLVDP-----I-P 114 (173)
Q Consensus 46 ~~~~~l~~L~~L~l~~n~l~~~---~~~~~~l~~L~~l~l~~~~~~~-~p~~-l~~l~~L~~L~l~~~~~~~-----l-p 114 (173)
..++.+++|+.|++++|.++.+ |..+..+++|+.|++++|.+.. +|.. +..+++|+.|++++|.+.. + +
T Consensus 371 ~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~ 450 (562)
T 3a79_B 371 QGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLPP 450 (562)
T ss_dssp TTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTCCEEECCSSCCCGGGGSSCCT
T ss_pred hhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcccCCEEECCCCCCCcchhhhhcC
Confidence 3456666777777777766633 3446667777777777777664 5543 5666777777777775532 2 2
Q ss_pred cceEEEeeceeccccCCCCC-CCccccceeec-----cccccc-cCCCCCcCEEEEecee
Q 047314 115 LLKHVCFNEFREMVVNPPVE-ASLPNLQKLIG-----TEMVCS-SGRFSHLQFLKLSNIR 167 (173)
Q Consensus 115 ~L~~L~l~~n~~~~~~lp~~-~~l~~L~~L~l-----~~~~~~-l~~l~~L~~L~l~~~~ 167 (173)
+|+.|++++|.+. .+|.. ..+++|+.|++ ..+|.. +..+++|+.|++++..
T Consensus 451 ~L~~L~L~~N~l~--~ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~ 508 (562)
T 3a79_B 451 KVKVLDLHNNRIM--SIPKDVTHLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDNP 508 (562)
T ss_dssp TCSEEECCSSCCC--CCCTTTTSSCCCSEEECCSSCCCCCCTTSTTTCTTCCCEECCSCC
T ss_pred cCCEEECCCCcCc--ccChhhcCCCCCCEEECCCCCCCCCCHHHHhcCCCCCEEEecCCC
Confidence 7788888888877 77777 77888888888 556665 7788888888887653
No 93
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.27 E-value=2.4e-11 Score=104.05 Aligned_cols=114 Identities=19% Similarity=0.186 Sum_probs=55.3
Q ss_pred CCCcccEEEecCcccccchhhhCCCC--------CCcEEeccCCcccccCcccc--CCCCccEEEecCCCCCCCC-----
Q 047314 50 ECRLLQVLDLEGVYMALLDSSVGNLI--------HLRYLDLRKTWLKKLPSSMG--NLFNLQSLDLSSTLVDPIP----- 114 (173)
Q Consensus 50 ~l~~L~~L~l~~n~l~~~~~~~~~l~--------~L~~l~l~~~~~~~~p~~l~--~l~~L~~L~l~~~~~~~lp----- 114 (173)
.+++|+.|++++|.++.+|..+.... +|+.|++++|.+..+|..+. .+++|+.|++++|.+..+|
T Consensus 695 ~l~~L~~L~Ls~N~L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~~lp~~l~~~~l~~L~~L~Ls~N~L~~lp~~l~~ 774 (876)
T 4ecn_A 695 TGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSLSDDFRATTLPYLSNMDVSYNCFSSFPTQPLN 774 (876)
T ss_dssp TTCCCSEEECCSCCCSCCCTTSSSCTTSCCTTGGGCCEEECCSSCCCCCCGGGSTTTCTTCCEEECCSSCCSSCCCGGGG
T ss_pred cCCCCCEEECCCCcCCccChHHhccccccccccCCccEEECCCCCCccchHHhhhccCCCcCEEEeCCCCCCccchhhhc
Confidence 44455555555555554444433221 45555555555555555444 4555555555555444444
Q ss_pred --cceEEEeec------eeccccCCCCC-CCccccceeec-----cccccccCCCCCcCEEEEece
Q 047314 115 --LLKHVCFNE------FREMVVNPPVE-ASLPNLQKLIG-----TEMVCSSGRFSHLQFLKLSNI 166 (173)
Q Consensus 115 --~L~~L~l~~------n~~~~~~lp~~-~~l~~L~~L~l-----~~~~~~l~~l~~L~~L~l~~~ 166 (173)
+|+.|++++ |.+.+ .+|.. +.+++|+.|++ +.+|..+. ++|+.|+++++
T Consensus 775 L~~L~~L~Ls~N~~ls~N~l~~-~ip~~l~~L~~L~~L~Ls~N~L~~Ip~~l~--~~L~~LdLs~N 837 (876)
T 4ecn_A 775 SSQLKAFGIRHQRDAEGNRILR-QWPTGITTCPSLIQLQIGSNDIRKVDEKLT--PQLYILDIADN 837 (876)
T ss_dssp CTTCCEEECCCCBCTTCCBCCC-CCCTTGGGCSSCCEEECCSSCCCBCCSCCC--SSSCEEECCSC
T ss_pred CCCCCEEECCCCCCcccccccc-cChHHHhcCCCCCEEECCCCCCCccCHhhc--CCCCEEECCCC
Confidence 455555543 33333 44444 55555555555 33444332 35555555554
No 94
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.26 E-value=1.9e-11 Score=101.70 Aligned_cols=115 Identities=21% Similarity=0.169 Sum_probs=98.9
Q ss_pred CcccEEEecCcccccchh-hhCCCCCCcEEeccCCccccc-CccccCCCCccEEEecCCCCCCCC--------cceEEEe
Q 047314 52 RLLQVLDLEGVYMALLDS-SVGNLIHLRYLDLRKTWLKKL-PSSMGNLFNLQSLDLSSTLVDPIP--------LLKHVCF 121 (173)
Q Consensus 52 ~~L~~L~l~~n~l~~~~~-~~~~l~~L~~l~l~~~~~~~~-p~~l~~l~~L~~L~l~~~~~~~lp--------~L~~L~l 121 (173)
++++.|++++|.++.+|+ .+.++++|+.|++++|.+..+ |..++.+++|++|++++|.+..+| +|++|++
T Consensus 25 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L 104 (680)
T 1ziw_A 25 TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHL 104 (680)
T ss_dssp TTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEEC
T ss_pred CCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChhhhccCCCCCEEEC
Confidence 689999999999996555 589999999999999999855 677899999999999999877666 8999999
Q ss_pred eceeccccCCC-CC-CCccccceeec------cccccccCCCCCcCEEEEeceee
Q 047314 122 NEFREMVVNPP-VE-ASLPNLQKLIG------TEMVCSSGRFSHLQFLKLSNIRV 168 (173)
Q Consensus 122 ~~n~~~~~~lp-~~-~~l~~L~~L~l------~~~~~~l~~l~~L~~L~l~~~~~ 168 (173)
++|.+. .++ .. +.+++|++|++ +..|..++++++|+.|+++++..
T Consensus 105 ~~n~l~--~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l 157 (680)
T 1ziw_A 105 MSNSIQ--KIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKI 157 (680)
T ss_dssp CSSCCC--CCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCC
T ss_pred CCCccC--ccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcc
Confidence 999998 665 45 89999999999 33466688999999999988643
No 95
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.25 E-value=2.2e-11 Score=99.47 Aligned_cols=117 Identities=21% Similarity=0.142 Sum_probs=96.0
Q ss_pred CcccEEEecCcccccch-hhhCCCCCCcEEeccCCccccc-CccccCCCCccEEEecCCCCCCCC-----cceEEEeece
Q 047314 52 RLLQVLDLEGVYMALLD-SSVGNLIHLRYLDLRKTWLKKL-PSSMGNLFNLQSLDLSSTLVDPIP-----LLKHVCFNEF 124 (173)
Q Consensus 52 ~~L~~L~l~~n~l~~~~-~~~~~l~~L~~l~l~~~~~~~~-p~~l~~l~~L~~L~l~~~~~~~lp-----~L~~L~l~~n 124 (173)
++++.|++++|.++.++ ..+.++++|+.|++++|.++.+ |..++.+++|++|++++|.+..+| +|+.|++++|
T Consensus 52 ~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~l~~L~~L~Ls~N 131 (562)
T 3a79_B 52 PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQNISCCPMASLRHLDLSFN 131 (562)
T ss_dssp TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSCCCEECSCCCTTCSEEECCSS
T ss_pred CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCcCCccCccccccCCEEECCCC
Confidence 78999999999999655 5799999999999999999966 677899999999999999887776 8999999999
Q ss_pred eccccCCCCC-CCccccceeec--ccc-ccccCCCCCc--CEEEEeceee
Q 047314 125 REMVVNPPVE-ASLPNLQKLIG--TEM-VCSSGRFSHL--QFLKLSNIRV 168 (173)
Q Consensus 125 ~~~~~~lp~~-~~l~~L~~L~l--~~~-~~~l~~l~~L--~~L~l~~~~~ 168 (173)
.+.+...|.. +++++|++|++ ..+ ...+..+++| +.|+++++..
T Consensus 132 ~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~L~L~~L~L~~n~l 181 (562)
T 3a79_B 132 DFDVLPVCKEFGNLTKLTFLGLSAAKFRQLDLLPVAHLHLSCILLDLVSY 181 (562)
T ss_dssp CCSBCCCCGGGGGCTTCCEEEEECSBCCTTTTGGGTTSCEEEEEEEESSC
T ss_pred CccccCchHhhcccCcccEEecCCCccccCchhhhhhceeeEEEeecccc
Confidence 9984334456 89999999999 111 2235566666 8998887644
No 96
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.24 E-value=1.2e-11 Score=93.99 Aligned_cols=116 Identities=17% Similarity=0.051 Sum_probs=63.8
Q ss_pred CCCcccEEEecCcccccc-hhhhCCCCCCcEEeccCCcccc---cC--ccccCCCCccEEEecCCCCCCCC---------
Q 047314 50 ECRLLQVLDLEGVYMALL-DSSVGNLIHLRYLDLRKTWLKK---LP--SSMGNLFNLQSLDLSSTLVDPIP--------- 114 (173)
Q Consensus 50 ~l~~L~~L~l~~n~l~~~-~~~~~~l~~L~~l~l~~~~~~~---~p--~~l~~l~~L~~L~l~~~~~~~lp--------- 114 (173)
.+++|++|++++|.++.. |..+..+++|++|++++|.+.. ++ ..++.+++|++|++++|.+..++
T Consensus 143 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~ 222 (310)
T 4glp_A 143 LKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAA 222 (310)
T ss_dssp BCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHH
T ss_pred hccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhc
Confidence 356666666666666633 3445566666666666665431 21 22245566666666666554322
Q ss_pred --cceEEEeeceeccccCCCCC-CCc---cccceeec-----cccccccCCCCCcCEEEEeceee
Q 047314 115 --LLKHVCFNEFREMVVNPPVE-ASL---PNLQKLIG-----TEMVCSSGRFSHLQFLKLSNIRV 168 (173)
Q Consensus 115 --~L~~L~l~~n~~~~~~lp~~-~~l---~~L~~L~l-----~~~~~~l~~l~~L~~L~l~~~~~ 168 (173)
+|++|++++|.+.+ ..|.. +.+ ++|++|++ ..+|..+. ++|+.|+++++..
T Consensus 223 l~~L~~L~Ls~N~l~~-~~p~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~--~~L~~L~Ls~N~l 284 (310)
T 4glp_A 223 GVQPHSLDLSHNSLRA-TVNPSAPRCMWSSALNSLNLSFAGLEQVPKGLP--AKLRVLDLSSNRL 284 (310)
T ss_dssp TCCCSSEECTTSCCCC-CCCSCCSSCCCCTTCCCEECCSSCCCSCCSCCC--SCCSCEECCSCCC
T ss_pred CCCCCEEECCCCCCCc-cchhhHHhccCcCcCCEEECCCCCCCchhhhhc--CCCCEEECCCCcC
Confidence 56667777776663 22443 333 56666666 34444442 5666666665543
No 97
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.24 E-value=8.7e-11 Score=82.13 Aligned_cols=93 Identities=24% Similarity=0.298 Sum_probs=65.0
Q ss_pred CCcccEEEecCcccccchhh-hCCCCCCcEEeccCCcccccCcc-ccCCCCccEEEecCCCCCCCC--------cceEEE
Q 047314 51 CRLLQVLDLEGVYMALLDSS-VGNLIHLRYLDLRKTWLKKLPSS-MGNLFNLQSLDLSSTLVDPIP--------LLKHVC 120 (173)
Q Consensus 51 l~~L~~L~l~~n~l~~~~~~-~~~l~~L~~l~l~~~~~~~~p~~-l~~l~~L~~L~l~~~~~~~lp--------~L~~L~ 120 (173)
.++++.|++++|.++.+|.. +..+++|+.|++++|.++.+|.. +..+++|+.|++++|.+..+| +|+.|+
T Consensus 27 ~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~ 106 (177)
T 2o6r_A 27 PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELA 106 (177)
T ss_dssp CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEE
Confidence 35777888888877755543 56777788888887777766543 577777888888777665544 677777
Q ss_pred eeceeccccCCCCC--CCccccceeec
Q 047314 121 FNEFREMVVNPPVE--ASLPNLQKLIG 145 (173)
Q Consensus 121 l~~n~~~~~~lp~~--~~l~~L~~L~l 145 (173)
+++|.+. .+|.. ..+++|++|++
T Consensus 107 l~~N~l~--~~~~~~~~~l~~L~~L~l 131 (177)
T 2o6r_A 107 LDTNQLK--SVPDGIFDRLTSLQKIWL 131 (177)
T ss_dssp CCSSCCS--CCCTTTTTTCTTCCEEEC
T ss_pred CcCCcce--EeCHHHhcCCcccCEEEe
Confidence 7777777 55543 56677777776
No 98
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.24 E-value=1.8e-11 Score=100.48 Aligned_cols=97 Identities=19% Similarity=0.159 Sum_probs=86.1
Q ss_pred ccccCCCcccEEEecCcccccchhhhCCCCCCcEEeccCCcccccCccccCCCCccEEEecCCCCCCC--C-------cc
Q 047314 46 FLAKECRLLQVLDLEGVYMALLDSSVGNLIHLRYLDLRKTWLKKLPSSMGNLFNLQSLDLSSTLVDPI--P-------LL 116 (173)
Q Consensus 46 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~l~~L~~l~l~~~~~~~~p~~l~~l~~L~~L~l~~~~~~~l--p-------~L 116 (173)
+.++.+++|+.|++++|.++.+|..++.+++|+.|++++|.++.+| .++.+++|+.|++++|.+..+ | +|
T Consensus 457 p~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L 535 (567)
T 1dce_A 457 CHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRL 535 (567)
T ss_dssp CCGGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCCCG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTC
T ss_pred cCccccccCcEeecCcccccccchhhhcCCCCCEEECCCCCCCCCc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCC
Confidence 4589999999999999999999999999999999999999999988 899999999999999988877 6 89
Q ss_pred eEEEeeceeccccCCCCC-----CCccccceeec
Q 047314 117 KHVCFNEFREMVVNPPVE-----ASLPNLQKLIG 145 (173)
Q Consensus 117 ~~L~l~~n~~~~~~lp~~-----~~l~~L~~L~l 145 (173)
+.|++++|.+. ..|.. ..+++|+.|++
T Consensus 536 ~~L~L~~N~l~--~~~~~~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 536 VLLNLQGNSLC--QEEGIQERLAEMLPSVSSILT 567 (567)
T ss_dssp CEEECTTSGGG--GSSSCTTHHHHHCTTCSEEEC
T ss_pred CEEEecCCcCC--CCccHHHHHHHHCcccCccCC
Confidence 99999999999 44433 34788888864
No 99
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.24 E-value=4.6e-11 Score=91.47 Aligned_cols=121 Identities=18% Similarity=0.144 Sum_probs=87.0
Q ss_pred ccccCCCcccEEEecCccccc-chhhhCCCCCCcEEeccCCcccccCccccCCCCccEEEecCCCCCCCC--------cc
Q 047314 46 FLAKECRLLQVLDLEGVYMAL-LDSSVGNLIHLRYLDLRKTWLKKLPSSMGNLFNLQSLDLSSTLVDPIP--------LL 116 (173)
Q Consensus 46 ~~~~~l~~L~~L~l~~n~l~~-~~~~~~~l~~L~~l~l~~~~~~~~p~~l~~l~~L~~L~l~~~~~~~lp--------~L 116 (173)
..+..+++|++|++++|.++. .|..+.++++|+.|++++|.+..+|..+. ++|+.|++++|.+..++ +|
T Consensus 72 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L 149 (332)
T 2ft3_A 72 DDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLVEIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNM 149 (332)
T ss_dssp TTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSCCCSCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSC
T ss_pred hHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCCcCCccCcccc--ccCCEEECCCCccCccCHhHhCCCccC
Confidence 468889999999999999984 47778899999999999998888887665 68888888888766655 78
Q ss_pred eEEEeeceeccccCC-CCC-CCc--------------------cccceeec-----cc-cccccCCCCCcCEEEEeceee
Q 047314 117 KHVCFNEFREMVVNP-PVE-ASL--------------------PNLQKLIG-----TE-MVCSSGRFSHLQFLKLSNIRV 168 (173)
Q Consensus 117 ~~L~l~~n~~~~~~l-p~~-~~l--------------------~~L~~L~l-----~~-~~~~l~~l~~L~~L~l~~~~~ 168 (173)
+.|++++|.+..... +.. +.+ ++|+.|++ .. .+..+..+++|+.|+++++..
T Consensus 150 ~~L~l~~n~l~~~~~~~~~~~~l~L~~L~l~~n~l~~l~~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l 229 (332)
T 2ft3_A 150 NCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLTGIPKDLPETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQI 229 (332)
T ss_dssp CEEECCSCCCBGGGSCTTSSCSCCCSCCBCCSSBCSSCCSSSCSSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCC
T ss_pred CEEECCCCccccCCCCcccccCCccCEEECcCCCCCccCccccCCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcC
Confidence 888888887752112 222 333 34555555 12 234577778888888777543
No 100
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.23 E-value=2.2e-11 Score=103.99 Aligned_cols=100 Identities=22% Similarity=0.211 Sum_probs=58.5
Q ss_pred ccccCCCcccEEEecCcccc-cc-hhhhCCCCCCcEEeccCCccccc-CccccCCCCccEEEecCCCCCC----------
Q 047314 46 FLAKECRLLQVLDLEGVYMA-LL-DSSVGNLIHLRYLDLRKTWLKKL-PSSMGNLFNLQSLDLSSTLVDP---------- 112 (173)
Q Consensus 46 ~~~~~l~~L~~L~l~~n~l~-~~-~~~~~~l~~L~~l~l~~~~~~~~-p~~l~~l~~L~~L~l~~~~~~~---------- 112 (173)
..|+++++|++|++++|... .+ |..+.++++|++|++++|.+..+ |..++.+++|+.|++++|.+..
T Consensus 42 ~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~ 121 (844)
T 3j0a_A 42 SSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRN 121 (844)
T ss_dssp SSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSS
T ss_pred hHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEeeCcCCCCCcccccCccccc
Confidence 34666666666666666433 33 45566666666666666666633 5566666666666666664432
Q ss_pred CCcceEEEeeceeccccCCCCC-CCccccceeec
Q 047314 113 IPLLKHVCFNEFREMVVNPPVE-ASLPNLQKLIG 145 (173)
Q Consensus 113 lp~L~~L~l~~n~~~~~~lp~~-~~l~~L~~L~l 145 (173)
+++|++|++++|.+.+...+.. +++++|++|++
T Consensus 122 L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~L 155 (844)
T 3j0a_A 122 LKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDF 155 (844)
T ss_dssp CSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEE
T ss_pred cCCCCEEECCCCcccccccchhHhhCCCCCEEEC
Confidence 1256666666666663111223 66666666665
No 101
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.23 E-value=9.1e-12 Score=94.78 Aligned_cols=61 Identities=23% Similarity=0.248 Sum_probs=34.5
Q ss_pred cCCCcccEEEecCcccccchhhhCCC-----CCCcEEeccCCcccccC-ccccCCCCccEEEecCCC
Q 047314 49 KECRLLQVLDLEGVYMALLDSSVGNL-----IHLRYLDLRKTWLKKLP-SSMGNLFNLQSLDLSSTL 109 (173)
Q Consensus 49 ~~l~~L~~L~l~~n~l~~~~~~~~~l-----~~L~~l~l~~~~~~~~p-~~l~~l~~L~~L~l~~~~ 109 (173)
..+++|++|++++|.++..|..+..+ ++|++|++++|.+..++ ..++.+++|+.|++++|.
T Consensus 118 ~~l~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~ 184 (312)
T 1wwl_A 118 ATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNP 184 (312)
T ss_dssp CCSCCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCT
T ss_pred hcCCCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCC
Confidence 55666666666666666445444444 55666666665555443 455555555555555554
No 102
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.23 E-value=1.8e-11 Score=93.08 Aligned_cols=93 Identities=18% Similarity=0.041 Sum_probs=44.5
Q ss_pred CcccEEEecCcccccch-hhhCCCCCCcEEeccCCccc-c--cCccc--cCCCCccEEEecCCCCCCC-----------C
Q 047314 52 RLLQVLDLEGVYMALLD-SSVGNLIHLRYLDLRKTWLK-K--LPSSM--GNLFNLQSLDLSSTLVDPI-----------P 114 (173)
Q Consensus 52 ~~L~~L~l~~n~l~~~~-~~~~~l~~L~~l~l~~~~~~-~--~p~~l--~~l~~L~~L~l~~~~~~~l-----------p 114 (173)
++|++|++++|.++.++ ..+..+++|+.|++++|.+. . .|..+ +.+++|+.|++++|.+..+ +
T Consensus 149 ~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~ 228 (312)
T 1wwl_A 149 PGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARV 228 (312)
T ss_dssp TTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTC
T ss_pred CCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCC
Confidence 55555555555555332 44555555555555555533 1 22222 4455555555555554421 1
Q ss_pred cceEEEeeceeccccCCC-CC-CCccccceeec
Q 047314 115 LLKHVCFNEFREMVVNPP-VE-ASLPNLQKLIG 145 (173)
Q Consensus 115 ~L~~L~l~~n~~~~~~lp-~~-~~l~~L~~L~l 145 (173)
+|+.|++++|.+.+ ..| .. ..+++|++|++
T Consensus 229 ~L~~L~Ls~N~l~~-~~~~~~~~~l~~L~~L~L 260 (312)
T 1wwl_A 229 QLQGLDLSHNSLRD-AAGAPSCDWPSQLNSLNL 260 (312)
T ss_dssp CCSEEECTTSCCCS-SCCCSCCCCCTTCCEEEC
T ss_pred CCCEEECCCCcCCc-ccchhhhhhcCCCCEEEC
Confidence 45555555555552 122 11 33455555554
No 103
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.23 E-value=4.3e-12 Score=96.78 Aligned_cols=116 Identities=15% Similarity=0.098 Sum_probs=73.7
Q ss_pred cccCCCcccEEEecCcccccchhhhCCCCCCcEEeccCCcccccCccccCCCCccEEEecCCCCCCCC-----cceEEEe
Q 047314 47 LAKECRLLQVLDLEGVYMALLDSSVGNLIHLRYLDLRKTWLKKLPSSMGNLFNLQSLDLSSTLVDPIP-----LLKHVCF 121 (173)
Q Consensus 47 ~~~~l~~L~~L~l~~n~l~~~~~~~~~l~~L~~l~l~~~~~~~~p~~l~~l~~L~~L~l~~~~~~~lp-----~L~~L~l 121 (173)
.+..+++|++|++++|.++..++ +..+++|++|++++|.++.+|. .++|+.|++++|.+..++ +|+.|++
T Consensus 53 ~~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~Ls~n~l~~l~~----~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l 127 (317)
T 3o53_A 53 DLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNYVQELLV----GPSIETLHAANNNISRVSCSRGQGKKNIYL 127 (317)
T ss_dssp HHTTCTTCCEEECTTSCCEEEEE-ETTCTTCCEEECCSSEEEEEEE----CTTCCEEECCSSCCSEEEECCCSSCEEEEC
T ss_pred HhhCCCcCCEEECCCCcCCcchh-hhhcCCCCEEECcCCccccccC----CCCcCEEECCCCccCCcCccccCCCCEEEC
Confidence 45566666666666666653333 5566666666666666554432 256666666666554433 7888888
Q ss_pred eceeccccCCCC-C-CCccccceeec-----cc-ccccc-CCCCCcCEEEEeceeee
Q 047314 122 NEFREMVVNPPV-E-ASLPNLQKLIG-----TE-MVCSS-GRFSHLQFLKLSNIRVE 169 (173)
Q Consensus 122 ~~n~~~~~~lp~-~-~~l~~L~~L~l-----~~-~~~~l-~~l~~L~~L~l~~~~~~ 169 (173)
++|.+. .++. . +.+++|++|++ .. .+..+ ..+++|+.|+++++...
T Consensus 128 ~~N~l~--~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~ 182 (317)
T 3o53_A 128 ANNKIT--MLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY 182 (317)
T ss_dssp CSSCCC--SGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCC
T ss_pred CCCCCC--CccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCc
Confidence 888887 4543 4 77888999988 22 23444 46889999999887643
No 104
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.23 E-value=6.6e-11 Score=94.72 Aligned_cols=93 Identities=17% Similarity=0.083 Sum_probs=56.9
Q ss_pred ccccCCCcccEEEecCcccccchhhhCCCCCCcEEeccCCcccccCccccCCCCccEEEecCCCCCCCC-----cceEEE
Q 047314 46 FLAKECRLLQVLDLEGVYMALLDSSVGNLIHLRYLDLRKTWLKKLPSSMGNLFNLQSLDLSSTLVDPIP-----LLKHVC 120 (173)
Q Consensus 46 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~l~~L~~l~l~~~~~~~~p~~l~~l~~L~~L~l~~~~~~~lp-----~L~~L~ 120 (173)
+.++.+++|++|++++|.++.+| ++.+++|++|++++|.++.+| ++.+++|++|++++|.+..+| +|+.|+
T Consensus 58 ~~l~~l~~L~~L~Ls~n~l~~~~--~~~l~~L~~L~Ls~N~l~~~~--~~~l~~L~~L~L~~N~l~~l~~~~l~~L~~L~ 133 (457)
T 3bz5_A 58 TGIEKLTGLTKLICTSNNITTLD--LSQNTNLTYLACDSNKLTNLD--VTPLTKLTYLNCDTNKLTKLDVSQNPLLTYLN 133 (457)
T ss_dssp TTGGGCTTCSEEECCSSCCSCCC--CTTCTTCSEEECCSSCCSCCC--CTTCTTCCEEECCSSCCSCCCCTTCTTCCEEE
T ss_pred hhhcccCCCCEEEccCCcCCeEc--cccCCCCCEEECcCCCCceee--cCCCCcCCEEECCCCcCCeecCCCCCcCCEEE
Confidence 34566667777777777666543 566666777777666666554 566666777777766554444 666666
Q ss_pred eeceeccccCCCCCCCccccceeec
Q 047314 121 FNEFREMVVNPPVEASLPNLQKLIG 145 (173)
Q Consensus 121 l~~n~~~~~~lp~~~~l~~L~~L~l 145 (173)
+++|.+.+ ++ .+.+++|++|++
T Consensus 134 l~~N~l~~--l~-l~~l~~L~~L~l 155 (457)
T 3bz5_A 134 CARNTLTE--ID-VSHNTQLTELDC 155 (457)
T ss_dssp CTTSCCSC--CC-CTTCTTCCEEEC
T ss_pred CCCCccce--ec-cccCCcCCEEEC
Confidence 66666662 22 144455555554
No 105
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.22 E-value=1.5e-11 Score=97.70 Aligned_cols=120 Identities=18% Similarity=0.090 Sum_probs=94.2
Q ss_pred cCCCcccEEEecCcccc-cchhhhCC---------------------------------------CCCCcEEeccCCccc
Q 047314 49 KECRLLQVLDLEGVYMA-LLDSSVGN---------------------------------------LIHLRYLDLRKTWLK 88 (173)
Q Consensus 49 ~~l~~L~~L~l~~n~l~-~~~~~~~~---------------------------------------l~~L~~l~l~~~~~~ 88 (173)
..+++|+.|++++|.++ ..|..+.. ..+|+.+++++|.+.
T Consensus 209 ~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~ 288 (455)
T 3v47_A 209 FKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIF 288 (455)
T ss_dssp TTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCC
T ss_pred cccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccchhhhccCcccccccccccCceEEEecCcccc
Confidence 35578999999999876 44443321 257899999999888
Q ss_pred -ccCccccCCCCccEEEecCCCCCCC--------CcceEEEeeceeccccCCCCC-CCccccceeec------ccccccc
Q 047314 89 -KLPSSMGNLFNLQSLDLSSTLVDPI--------PLLKHVCFNEFREMVVNPPVE-ASLPNLQKLIG------TEMVCSS 152 (173)
Q Consensus 89 -~~p~~l~~l~~L~~L~l~~~~~~~l--------p~L~~L~l~~n~~~~~~lp~~-~~l~~L~~L~l------~~~~~~l 152 (173)
..|..++.+++|+.|++++|.+..+ ++|+.|++++|.+.+ ..|.. +.+++|+.|++ +..|..+
T Consensus 289 ~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~ 367 (455)
T 3v47_A 289 ALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGS-IDSRMFENLDKLEVLDLSYNHIRALGDQSF 367 (455)
T ss_dssp EECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCE-ECGGGGTTCTTCCEEECCSSCCCEECTTTT
T ss_pred ccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCC-cChhHhcCcccCCEEECCCCcccccChhhc
Confidence 4577889999999999999976554 289999999999984 33455 88999999999 3346779
Q ss_pred CCCCCcCEEEEeceeee
Q 047314 153 GRFSHLQFLKLSNIRVE 169 (173)
Q Consensus 153 ~~l~~L~~L~l~~~~~~ 169 (173)
..+++|+.|+++++...
T Consensus 368 ~~l~~L~~L~L~~N~l~ 384 (455)
T 3v47_A 368 LGLPNLKELALDTNQLK 384 (455)
T ss_dssp TTCTTCCEEECCSSCCS
T ss_pred cccccccEEECCCCccc
Confidence 99999999999987544
No 106
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.22 E-value=3e-11 Score=85.80 Aligned_cols=109 Identities=20% Similarity=0.171 Sum_probs=61.7
Q ss_pred cEEEecCcccccchhhhCCCCCCcEEeccCCcccccCcc--ccCCCCccEEEecCCCCCCCC--------cceEEEeece
Q 047314 55 QVLDLEGVYMALLDSSVGNLIHLRYLDLRKTWLKKLPSS--MGNLFNLQSLDLSSTLVDPIP--------LLKHVCFNEF 124 (173)
Q Consensus 55 ~~L~l~~n~l~~~~~~~~~l~~L~~l~l~~~~~~~~p~~--l~~l~~L~~L~l~~~~~~~lp--------~L~~L~l~~n 124 (173)
++++++++.++.+|..+.. +++.|++++|.++.++.. ++.+++|+.|++++|.+..++ +|+.|++++|
T Consensus 11 ~~l~~s~~~l~~ip~~~~~--~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N 88 (192)
T 1w8a_A 11 TTVDCTGRGLKEIPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGEN 88 (192)
T ss_dssp TEEECTTSCCSSCCSCCCT--TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSC
T ss_pred CEEEcCCCCcCcCccCCCC--CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCC
Confidence 4566666666665554433 566666666666655432 566666666666666554432 5666666666
Q ss_pred eccccCCCCC-CCccccceeec------cccccccCCCCCcCEEEEece
Q 047314 125 REMVVNPPVE-ASLPNLQKLIG------TEMVCSSGRFSHLQFLKLSNI 166 (173)
Q Consensus 125 ~~~~~~lp~~-~~l~~L~~L~l------~~~~~~l~~l~~L~~L~l~~~ 166 (173)
.+.+ ..+.. +.+++|++|++ +..|..+..+++|+.|++++.
T Consensus 89 ~l~~-~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N 136 (192)
T 1w8a_A 89 KIKE-ISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASN 136 (192)
T ss_dssp CCCE-ECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTC
T ss_pred cCCc-cCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCC
Confidence 6663 22233 55666666666 223445666666666666553
No 107
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.22 E-value=3.9e-11 Score=96.08 Aligned_cols=113 Identities=17% Similarity=0.095 Sum_probs=95.8
Q ss_pred ccccCCCcccEEEecCcccccchhhhCCCCCCcEEeccCCcccccCccccCCCCccEEEecCCCCCCCC-----cceEEE
Q 047314 46 FLAKECRLLQVLDLEGVYMALLDSSVGNLIHLRYLDLRKTWLKKLPSSMGNLFNLQSLDLSSTLVDPIP-----LLKHVC 120 (173)
Q Consensus 46 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~l~~L~~l~l~~~~~~~~p~~l~~l~~L~~L~l~~~~~~~lp-----~L~~L~ 120 (173)
..++.+++|++|++++|.++.+| .+..+++|+.|++++|.++.+| ++.+++|+.|++++|.+..++ +|+.|+
T Consensus 36 ~~~~~l~~L~~L~Ls~n~l~~~~-~l~~l~~L~~L~Ls~n~l~~~~--~~~l~~L~~L~Ls~N~l~~~~~~~l~~L~~L~ 112 (457)
T 3bz5_A 36 ISEEQLATLTSLDCHNSSITDMT-GIEKLTGLTKLICTSNNITTLD--LSQNTNLTYLACDSNKLTNLDVTPLTKLTYLN 112 (457)
T ss_dssp EEHHHHTTCCEEECCSSCCCCCT-TGGGCTTCSEEECCSSCCSCCC--CTTCTTCSEEECCSSCCSCCCCTTCTTCCEEE
T ss_pred cChhHcCCCCEEEccCCCcccCh-hhcccCCCCEEEccCCcCCeEc--cccCCCCCEEECcCCCCceeecCCCCcCCEEE
Confidence 35778999999999999999776 6899999999999999999876 889999999999999776655 899999
Q ss_pred eeceeccccCCCCCCCccccceeec-----cccccccCCCCCcCEEEEece
Q 047314 121 FNEFREMVVNPPVEASLPNLQKLIG-----TEMVCSSGRFSHLQFLKLSNI 166 (173)
Q Consensus 121 l~~n~~~~~~lp~~~~l~~L~~L~l-----~~~~~~l~~l~~L~~L~l~~~ 166 (173)
+++|.+. .++ .+.+++|++|++ ..+ .++.+++|+.|+++++
T Consensus 113 L~~N~l~--~l~-~~~l~~L~~L~l~~N~l~~l--~l~~l~~L~~L~l~~n 158 (457)
T 3bz5_A 113 CDTNKLT--KLD-VSQNPLLTYLNCARNTLTEI--DVSHNTQLTELDCHLN 158 (457)
T ss_dssp CCSSCCS--CCC-CTTCTTCCEEECTTSCCSCC--CCTTCTTCCEEECTTC
T ss_pred CCCCcCC--eec-CCCCCcCCEEECCCCcccee--ccccCCcCCEEECCCC
Confidence 9999998 454 378899999998 233 3677888888887766
No 108
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.21 E-value=9.4e-11 Score=93.75 Aligned_cols=116 Identities=20% Similarity=0.243 Sum_probs=62.7
Q ss_pred ccCCCcccEEEecCcccccchhhhCCCCCCcEEeccCCcccccCccccCCCCccEEEecCCCCCCCC------cceEEEe
Q 047314 48 AKECRLLQVLDLEGVYMALLDSSVGNLIHLRYLDLRKTWLKKLPSSMGNLFNLQSLDLSSTLVDPIP------LLKHVCF 121 (173)
Q Consensus 48 ~~~l~~L~~L~l~~n~l~~~~~~~~~l~~L~~l~l~~~~~~~~p~~l~~l~~L~~L~l~~~~~~~lp------~L~~L~l 121 (173)
+..+++|+.|++++|.++..++ +..+++|+.|++++|.+..++. ++.+++|+.|++++|.+..++ +|+.|++
T Consensus 261 ~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~l 338 (466)
T 1o6v_A 261 LSGLTKLTELKLGANQISNISP-LAGLTALTNLELNENQLEDISP-ISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFF 338 (466)
T ss_dssp GTTCTTCSEEECCSSCCCCCGG-GTTCTTCSEEECCSSCCSCCGG-GGGCTTCSEEECCSSCCSCCGGGGGCTTCCEEEC
T ss_pred hhcCCCCCEEECCCCccCcccc-ccCCCccCeEEcCCCcccCchh-hcCCCCCCEEECcCCcCCCchhhccCccCCEeEC
Confidence 4444455555555554443333 4455555555555555554433 455555666666665444332 5666666
Q ss_pred eceeccccCCCCCCCccccceeec-----cccccccCCCCCcCEEEEeceee
Q 047314 122 NEFREMVVNPPVEASLPNLQKLIG-----TEMVCSSGRFSHLQFLKLSNIRV 168 (173)
Q Consensus 122 ~~n~~~~~~lp~~~~l~~L~~L~l-----~~~~~~l~~l~~L~~L~l~~~~~ 168 (173)
++|.+. .++..+.+++|+.|++ ...+. +..+++|+.|+++++..
T Consensus 339 ~~n~l~--~~~~l~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~~ 387 (466)
T 1o6v_A 339 YNNKVS--DVSSLANLTNINWLSAGHNQISDLTP-LANLTRITQLGLNDQAW 387 (466)
T ss_dssp CSSCCC--CCGGGTTCTTCCEEECCSSCCCBCGG-GTTCTTCCEEECCCEEE
T ss_pred CCCccC--CchhhccCCCCCEEeCCCCccCccch-hhcCCCCCEEeccCCcc
Confidence 666665 3321166677777776 12222 66777777777776643
No 109
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.20 E-value=1.6e-11 Score=85.92 Aligned_cols=95 Identities=15% Similarity=0.128 Sum_probs=82.6
Q ss_pred ccCCC-cccEEEecCcccccchhhhCCCCCCcEEeccCCcccccCccc-cCCCCccEEEecCCCCCCCC---------cc
Q 047314 48 AKECR-LLQVLDLEGVYMALLDSSVGNLIHLRYLDLRKTWLKKLPSSM-GNLFNLQSLDLSSTLVDPIP---------LL 116 (173)
Q Consensus 48 ~~~l~-~L~~L~l~~n~l~~~~~~~~~l~~L~~l~l~~~~~~~~p~~l-~~l~~L~~L~l~~~~~~~lp---------~L 116 (173)
+..+. +|++|++++|.++.+ +.+..+++|+.|++++|.++.+|+.+ ..+++|+.|++++|.++.+| +|
T Consensus 37 ~~~~~~~L~~L~Ls~N~l~~~-~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~l~~l~~L 115 (176)
T 1a9n_A 37 LGATLDQFDAIDFSDNEIRKL-DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSL 115 (176)
T ss_dssp GGGGTTCCSEEECCSSCCCEE-CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEECCSCCCCCGGGGGGGGGCTTC
T ss_pred hhhcCCCCCEEECCCCCCCcc-cccccCCCCCEEECCCCcccccCcchhhcCCCCCEEECCCCcCCcchhhHhhhcCCCC
Confidence 44444 999999999999976 67889999999999999999888665 89999999999999887655 79
Q ss_pred eEEEeeceeccccCCCC----C-CCccccceeec
Q 047314 117 KHVCFNEFREMVVNPPV----E-ASLPNLQKLIG 145 (173)
Q Consensus 117 ~~L~l~~n~~~~~~lp~----~-~~l~~L~~L~l 145 (173)
+.+++++|.+. .+|. . +.+++|+.|++
T Consensus 116 ~~L~l~~N~i~--~~~~~~~~~~~~l~~L~~Ld~ 147 (176)
T 1a9n_A 116 TYLCILRNPVT--NKKHYRLYVIYKVPQVRVLDF 147 (176)
T ss_dssp CEEECCSSGGG--GSTTHHHHHHHHCTTCSEETT
T ss_pred CEEEecCCCCC--CcHhHHHHHHHHCCccceeCC
Confidence 99999999998 6665 3 78899999998
No 110
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.18 E-value=5.8e-13 Score=95.06 Aligned_cols=110 Identities=21% Similarity=0.250 Sum_probs=90.9
Q ss_pred ccEEEecCc--ccccchhhhCCCCCCcEEeccCCcccccCccccCCCCccEEEecCCCCCCCC-------cceEEEeece
Q 047314 54 LQVLDLEGV--YMALLDSSVGNLIHLRYLDLRKTWLKKLPSSMGNLFNLQSLDLSSTLVDPIP-------LLKHVCFNEF 124 (173)
Q Consensus 54 L~~L~l~~n--~l~~~~~~~~~l~~L~~l~l~~~~~~~~p~~l~~l~~L~~L~l~~~~~~~lp-------~L~~L~l~~n 124 (173)
++...+.+. .++.+|..+..+++|+.|++++|.++.+| .+..+++|+.|++++|.+..+| +|+.|++++|
T Consensus 25 l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~l~-~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~N 103 (198)
T 1ds9_A 25 AEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEKIS-SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYN 103 (198)
T ss_dssp CSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESCCC-CHHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEEEEEE
T ss_pred hheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcccc-ccccCCCCCEEECCCCCcccccchhhcCCcCCEEECcCC
Confidence 444445443 34456668999999999999999999888 8899999999999999888888 7999999999
Q ss_pred eccccCCCCC-CCccccceeec-----ccccc--ccCCCCCcCEEEEecee
Q 047314 125 REMVVNPPVE-ASLPNLQKLIG-----TEMVC--SSGRFSHLQFLKLSNIR 167 (173)
Q Consensus 125 ~~~~~~lp~~-~~l~~L~~L~l-----~~~~~--~l~~l~~L~~L~l~~~~ 167 (173)
.+. .+| . +.+++|++|++ ..++. .+..+++|+.|+++++.
T Consensus 104 ~l~--~l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~ 151 (198)
T 1ds9_A 104 QIA--SLS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNP 151 (198)
T ss_dssp ECC--CHH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCH
T ss_pred cCC--cCC-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCc
Confidence 998 566 5 78899999998 33333 68899999999998864
No 111
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.18 E-value=7.1e-11 Score=100.89 Aligned_cols=120 Identities=23% Similarity=0.217 Sum_probs=96.1
Q ss_pred ccccCCCcccEEEecCcccc-cchhhhCCCCCCcEEeccCCccc-ccCcc--ccCCCCccEEEecCCCCCCCC-------
Q 047314 46 FLAKECRLLQVLDLEGVYMA-LLDSSVGNLIHLRYLDLRKTWLK-KLPSS--MGNLFNLQSLDLSSTLVDPIP------- 114 (173)
Q Consensus 46 ~~~~~l~~L~~L~l~~n~l~-~~~~~~~~l~~L~~l~l~~~~~~-~~p~~--l~~l~~L~~L~l~~~~~~~lp------- 114 (173)
..|.++++|++|++++|.++ ..|..+.++++|+.|++++|.+. ..|.. ++.+++|+.|++++|.+..++
T Consensus 67 ~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~ 146 (844)
T 3j0a_A 67 EAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGK 146 (844)
T ss_dssp TTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGT
T ss_pred HHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhh
Confidence 46899999999999999999 45888999999999999999988 45554 899999999999999765542
Q ss_pred --cceEEEeeceeccccCCCCC-CCc--cccceeec------cccccccCCCCC------cCEEEEece
Q 047314 115 --LLKHVCFNEFREMVVNPPVE-ASL--PNLQKLIG------TEMVCSSGRFSH------LQFLKLSNI 166 (173)
Q Consensus 115 --~L~~L~l~~n~~~~~~lp~~-~~l--~~L~~L~l------~~~~~~l~~l~~------L~~L~l~~~ 166 (173)
+|+.|++++|.+.+ ..+.. +.+ ++|+.|++ +..|..++.+++ |+.|+++++
T Consensus 147 L~~L~~L~Ls~N~i~~-~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n 214 (844)
T 3j0a_A 147 LNSLKSIDFSSNQIFL-VCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGN 214 (844)
T ss_dssp CSSCCEEEEESSCCCC-CCSGGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSC
T ss_pred CCCCCEEECCCCcCCe-eCHHHcccccCCccceEECCCCccccccccchhhcCCccccCceeEEecCCC
Confidence 89999999999884 34444 555 78888887 334555555554 889988876
No 112
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.17 E-value=2.2e-10 Score=80.10 Aligned_cols=110 Identities=19% Similarity=0.216 Sum_probs=82.5
Q ss_pred ccEEEecCcccccchhhhCCCCCCcEEeccCCcccccCc-cccCCCCccEEEecCCCCCCCC--------cceEEEeece
Q 047314 54 LQVLDLEGVYMALLDSSVGNLIHLRYLDLRKTWLKKLPS-SMGNLFNLQSLDLSSTLVDPIP--------LLKHVCFNEF 124 (173)
Q Consensus 54 L~~L~l~~n~l~~~~~~~~~l~~L~~l~l~~~~~~~~p~-~l~~l~~L~~L~l~~~~~~~lp--------~L~~L~l~~n 124 (173)
.+.+++.++.++.+|..+. ++++.|++++|.++.+|. .++.+++|+.|++++|.+..++ +|+.|++++|
T Consensus 9 ~~~l~~~~~~l~~~p~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N 86 (177)
T 2o6r_A 9 GTEIRCNSKGLTSVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHEN 86 (177)
T ss_dssp TTEEECCSSCCSSCCTTCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CCEEEecCCCCccCCCCCC--CCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCC
Confidence 4678888888887776543 578888888888886664 4578888888888888766654 7888888888
Q ss_pred eccccCCCC-C-CCccccceeec-----cccccc-cCCCCCcCEEEEecee
Q 047314 125 REMVVNPPV-E-ASLPNLQKLIG-----TEMVCS-SGRFSHLQFLKLSNIR 167 (173)
Q Consensus 125 ~~~~~~lp~-~-~~l~~L~~L~l-----~~~~~~-l~~l~~L~~L~l~~~~ 167 (173)
.+. .++. . +.+++|++|++ ..+|.. +..+++|+.|++++..
T Consensus 87 ~l~--~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~ 135 (177)
T 2o6r_A 87 KLQ--SLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNP 135 (177)
T ss_dssp CCC--CCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred Ccc--ccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCC
Confidence 888 5554 3 77888888888 444544 5778888888887754
No 113
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.17 E-value=2.8e-11 Score=91.94 Aligned_cols=119 Identities=17% Similarity=0.061 Sum_probs=95.3
Q ss_pred ccccCCCcccEEEecCccccc---chhh--hCCCCCCcEEeccCCcccccCcc----ccCCCCccEEEecCCCCCCC-C-
Q 047314 46 FLAKECRLLQVLDLEGVYMAL---LDSS--VGNLIHLRYLDLRKTWLKKLPSS----MGNLFNLQSLDLSSTLVDPI-P- 114 (173)
Q Consensus 46 ~~~~~l~~L~~L~l~~n~l~~---~~~~--~~~l~~L~~l~l~~~~~~~~p~~----l~~l~~L~~L~l~~~~~~~l-p- 114 (173)
..++.+++|++|++++|.+.. ++.. +..+++|++|++++|.++.++.. ++.+++|+.|++++|.+... |
T Consensus 163 ~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~ 242 (310)
T 4glp_A 163 EQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAGVQPHSLDLSHNSLRATVNP 242 (310)
T ss_dssp TSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTTSCCCCCCCS
T ss_pred HHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcCCCCCEEECCCCCCCccchh
Confidence 567899999999999999762 3333 36889999999999999865542 47789999999999977665 3
Q ss_pred ---------cceEEEeeceeccccCCCCCCCccccceeec-----cccccccCCCCCcCEEEEeceee
Q 047314 115 ---------LLKHVCFNEFREMVVNPPVEASLPNLQKLIG-----TEMVCSSGRFSHLQFLKLSNIRV 168 (173)
Q Consensus 115 ---------~L~~L~l~~n~~~~~~lp~~~~l~~L~~L~l-----~~~~~~l~~l~~L~~L~l~~~~~ 168 (173)
+|+.|++++|.+. .+|.. -.++|+.|++ ..+|. +..+++|+.|++++...
T Consensus 243 ~~~~~~~~~~L~~L~Ls~N~l~--~lp~~-~~~~L~~L~Ls~N~l~~~~~-~~~l~~L~~L~L~~N~l 306 (310)
T 4glp_A 243 SAPRCMWSSALNSLNLSFAGLE--QVPKG-LPAKLRVLDLSSNRLNRAPQ-PDELPEVDNLTLDGNPF 306 (310)
T ss_dssp CCSSCCCCTTCCCEECCSSCCC--SCCSC-CCSCCSCEECCSCCCCSCCC-TTSCCCCSCEECSSTTT
T ss_pred hHHhccCcCcCCEEECCCCCCC--chhhh-hcCCCCEEECCCCcCCCCch-hhhCCCccEEECcCCCC
Confidence 7999999999999 78775 2279999999 33443 67899999999987654
No 114
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.16 E-value=5.2e-11 Score=92.44 Aligned_cols=119 Identities=22% Similarity=0.214 Sum_probs=94.2
Q ss_pred cccc-CCCcccEEEecCcccccch-hhhCCCCCCcEEeccCCcccccCc-cccCCCCccEEEecCCCCCCC--------C
Q 047314 46 FLAK-ECRLLQVLDLEGVYMALLD-SSVGNLIHLRYLDLRKTWLKKLPS-SMGNLFNLQSLDLSSTLVDPI--------P 114 (173)
Q Consensus 46 ~~~~-~l~~L~~L~l~~n~l~~~~-~~~~~l~~L~~l~l~~~~~~~~p~-~l~~l~~L~~L~l~~~~~~~l--------p 114 (173)
..+. .+++|+.|++++|.++.++ ..+..+++|+.|++++|.++.++. .+..+++|+.|++++|.+..+ +
T Consensus 57 ~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~ 136 (361)
T 2xot_A 57 EWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMA 136 (361)
T ss_dssp TSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCT
T ss_pred hhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcc
Confidence 4465 8999999999999999655 568999999999999999997764 678999999999999977654 3
Q ss_pred cceEEEeeceeccccCCCCC-----CCccccceeec-----cccc-cccCCCCC--cCEEEEece
Q 047314 115 LLKHVCFNEFREMVVNPPVE-----ASLPNLQKLIG-----TEMV-CSSGRFSH--LQFLKLSNI 166 (173)
Q Consensus 115 ~L~~L~l~~n~~~~~~lp~~-----~~l~~L~~L~l-----~~~~-~~l~~l~~--L~~L~l~~~ 166 (173)
+|+.|++++|.+. .+|.. ..+++|+.|++ ..+| ..+..++. ++.|++.+.
T Consensus 137 ~L~~L~L~~N~l~--~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~~~l~~l~l~~N 199 (361)
T 2xot_A 137 QLQKLYLSQNQIS--RFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNN 199 (361)
T ss_dssp TCCEEECCSSCCC--SCCGGGTC----CTTCCEEECCSSCCCCCCHHHHHHSCHHHHTTEECCSS
T ss_pred cCCEEECCCCcCC--eeCHHHhcCcccCCcCCEEECCCCCCCccCHHHhhhccHhhcceEEecCC
Confidence 8999999999999 67654 35889999998 3333 23556665 367777764
No 115
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.15 E-value=2.6e-10 Score=91.18 Aligned_cols=93 Identities=17% Similarity=0.259 Sum_probs=54.8
Q ss_pred cccCCCcccEEEecCcccccchhhhCCCCCCcEEeccCCcccccCccccCCCCccEEEecCCCCCCCC----cceEEEee
Q 047314 47 LAKECRLLQVLDLEGVYMALLDSSVGNLIHLRYLDLRKTWLKKLPSSMGNLFNLQSLDLSSTLVDPIP----LLKHVCFN 122 (173)
Q Consensus 47 ~~~~l~~L~~L~l~~n~l~~~~~~~~~l~~L~~l~l~~~~~~~~p~~l~~l~~L~~L~l~~~~~~~lp----~L~~L~l~ 122 (173)
.++.+++|++|++++|.++.+|..+ .+|+.|++++|.++.+| .++.+++|+.|++++|.+..+| +|+.|+++
T Consensus 148 ~~~~l~~L~~L~l~~N~l~~lp~~~---~~L~~L~L~~n~l~~l~-~~~~l~~L~~L~l~~N~l~~l~~~~~~L~~L~l~ 223 (454)
T 1jl5_A 148 ELQNSSFLKIIDVDNNSLKKLPDLP---PSLEFIAAGNNQLEELP-ELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAG 223 (454)
T ss_dssp CCTTCTTCCEEECCSSCCSCCCCCC---TTCCEEECCSSCCSSCC-CCTTCTTCCEEECCSSCCSSCCCCCTTCCEEECC
T ss_pred ccCCCCCCCEEECCCCcCcccCCCc---ccccEEECcCCcCCcCc-cccCCCCCCEEECCCCcCCcCCCCcCcccEEECc
Confidence 3455555555555555554443322 34555555555555554 4666677777777777665554 67777777
Q ss_pred ceeccccCCCCCCCccccceeec
Q 047314 123 EFREMVVNPPVEASLPNLQKLIG 145 (173)
Q Consensus 123 ~n~~~~~~lp~~~~l~~L~~L~l 145 (173)
+|.+. .+|..+.+++|++|++
T Consensus 224 ~n~l~--~lp~~~~l~~L~~L~l 244 (454)
T 1jl5_A 224 NNILE--ELPELQNLPFLTTIYA 244 (454)
T ss_dssp SSCCS--SCCCCTTCTTCCEEEC
T ss_pred CCcCC--cccccCCCCCCCEEEC
Confidence 77666 5663366677777776
No 116
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.14 E-value=2.1e-10 Score=79.97 Aligned_cols=76 Identities=28% Similarity=0.310 Sum_probs=42.1
Q ss_pred CcccEEEecCcccccc-hhhhCCCCCCcEEeccCCcccccCcc-ccCCCCccEEEecCCCCCCCC--------cceEEEe
Q 047314 52 RLLQVLDLEGVYMALL-DSSVGNLIHLRYLDLRKTWLKKLPSS-MGNLFNLQSLDLSSTLVDPIP--------LLKHVCF 121 (173)
Q Consensus 52 ~~L~~L~l~~n~l~~~-~~~~~~l~~L~~l~l~~~~~~~~p~~-l~~l~~L~~L~l~~~~~~~lp--------~L~~L~l 121 (173)
+++++|++++|.++.+ |..+..+++|+.|++++|.++.+|.. +..+++|+.|++++|.+..+| +|+.|++
T Consensus 30 ~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L 109 (170)
T 3g39_A 30 TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWL 109 (170)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCccCEeCHHHhcCCCCCCEEEe
Confidence 4555666666666533 33455566666666666665555433 355566666666666544443 4555666
Q ss_pred eceecc
Q 047314 122 NEFREM 127 (173)
Q Consensus 122 ~~n~~~ 127 (173)
++|.+.
T Consensus 110 ~~N~~~ 115 (170)
T 3g39_A 110 LNNPWD 115 (170)
T ss_dssp CSSCBC
T ss_pred CCCCCC
Confidence 555554
No 117
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.14 E-value=1.1e-11 Score=94.78 Aligned_cols=15 Identities=33% Similarity=0.230 Sum_probs=6.0
Q ss_pred cCCCCCcCEEEEece
Q 047314 152 SGRFSHLQFLKLSNI 166 (173)
Q Consensus 152 l~~l~~L~~L~l~~~ 166 (173)
+..+++|+.|+++++
T Consensus 243 l~~l~~L~~L~l~~~ 257 (336)
T 2ast_B 243 FFQLNYLQHLSLSRC 257 (336)
T ss_dssp GGGCTTCCEEECTTC
T ss_pred HhCCCCCCEeeCCCC
Confidence 333444444444333
No 118
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.13 E-value=2.6e-10 Score=79.82 Aligned_cols=76 Identities=24% Similarity=0.288 Sum_probs=44.6
Q ss_pred CcccEEEecCcccccc-hhhhCCCCCCcEEeccCCcccccCcc-ccCCCCccEEEecCCCCCCCC--------cceEEEe
Q 047314 52 RLLQVLDLEGVYMALL-DSSVGNLIHLRYLDLRKTWLKKLPSS-MGNLFNLQSLDLSSTLVDPIP--------LLKHVCF 121 (173)
Q Consensus 52 ~~L~~L~l~~n~l~~~-~~~~~~l~~L~~l~l~~~~~~~~p~~-l~~l~~L~~L~l~~~~~~~lp--------~L~~L~l 121 (173)
++|+.|++++|.++.+ |..+..+++|+.|++++|.++.+|.. +..+++|+.|++++|.+..+| +|+.|++
T Consensus 33 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L 112 (174)
T 2r9u_A 33 TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYL 112 (174)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEEC
T ss_pred CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCccceeCHHHhccccCCCEEEe
Confidence 4566666666666643 34455666666666666666655543 355666666666666554443 5566666
Q ss_pred eceecc
Q 047314 122 NEFREM 127 (173)
Q Consensus 122 ~~n~~~ 127 (173)
++|.+.
T Consensus 113 ~~N~~~ 118 (174)
T 2r9u_A 113 YNNPWD 118 (174)
T ss_dssp CSSCBC
T ss_pred CCCCcc
Confidence 666555
No 119
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.11 E-value=6.9e-12 Score=95.88 Aligned_cols=122 Identities=18% Similarity=0.129 Sum_probs=100.3
Q ss_pred cccCCCcccEEEecCcccc-c-chhhhCCCCCCcEEeccCCccc-ccCccccCCCCccEEEecCC-CCCC---------C
Q 047314 47 LAKECRLLQVLDLEGVYMA-L-LDSSVGNLIHLRYLDLRKTWLK-KLPSSMGNLFNLQSLDLSST-LVDP---------I 113 (173)
Q Consensus 47 ~~~~l~~L~~L~l~~n~l~-~-~~~~~~~l~~L~~l~l~~~~~~-~~p~~l~~l~~L~~L~l~~~-~~~~---------l 113 (173)
.+..+++|+.|++++|.++ . +|..+..+++|+.|++++|.+. ..|..++.+++|+.|++++| .++. +
T Consensus 88 ~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~ 167 (336)
T 2ast_B 88 EHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSC 167 (336)
T ss_dssp SCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHC
T ss_pred hhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcC
Confidence 3567899999999999988 4 7888899999999999999888 67788889999999999999 5653 3
Q ss_pred CcceEEEeece-eccccCCCCC-CCcc-ccceeec-c--------ccccccCCCCCcCEEEEeceee
Q 047314 114 PLLKHVCFNEF-REMVVNPPVE-ASLP-NLQKLIG-T--------EMVCSSGRFSHLQFLKLSNIRV 168 (173)
Q Consensus 114 p~L~~L~l~~n-~~~~~~lp~~-~~l~-~L~~L~l-~--------~~~~~l~~l~~L~~L~l~~~~~ 168 (173)
++|+.|++++| .+.+..++.. +.++ +|++|++ + .++..+..+++|+.|+++++..
T Consensus 168 ~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~ 234 (336)
T 2ast_B 168 SRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVM 234 (336)
T ss_dssp TTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTT
T ss_pred CCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCc
Confidence 38999999999 8875335666 7888 9999998 1 1244567899999999998863
No 120
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.08 E-value=7.2e-10 Score=91.88 Aligned_cols=67 Identities=21% Similarity=0.151 Sum_probs=47.1
Q ss_pred CCccEEEecCCCCCCCC----cceEEEeeceeccccCCCCCCCccccceeec-----cccccccCCCCCcCEEEEeceee
Q 047314 98 FNLQSLDLSSTLVDPIP----LLKHVCFNEFREMVVNPPVEASLPNLQKLIG-----TEMVCSSGRFSHLQFLKLSNIRV 168 (173)
Q Consensus 98 ~~L~~L~l~~~~~~~lp----~L~~L~l~~n~~~~~~lp~~~~l~~L~~L~l-----~~~~~~l~~l~~L~~L~l~~~~~ 168 (173)
++|+.|++++|.+..+| +|+.|++++|.+. .+|. .+++|+.|++ ..+|..+.++++|+.|+++++..
T Consensus 221 ~~L~~L~Ls~N~L~~lp~~l~~L~~L~Ls~N~L~--~lp~--~~~~L~~L~Ls~N~L~~lp~~l~~l~~L~~L~L~~N~l 296 (622)
T 3g06_A 221 SGLKELIVSGNRLTSLPVLPSELKELMVSGNRLT--SLPM--LPSGLLSLSVYRNQLTRLPESLIHLSSETTVNLEGNPL 296 (622)
T ss_dssp TTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCS--CCCC--CCTTCCEEECCSSCCCSCCGGGGGSCTTCEEECCSCCC
T ss_pred CCCCEEEccCCccCcCCCCCCcCcEEECCCCCCC--cCCc--ccccCcEEeCCCCCCCcCCHHHhhccccCEEEecCCCC
Confidence 45666666666665554 6777777777666 5554 4567777777 56777788889999998887653
No 121
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.05 E-value=1.1e-09 Score=87.62 Aligned_cols=109 Identities=20% Similarity=0.254 Sum_probs=65.6
Q ss_pred CcccEEEecCcccccchhhhCCCCCCcEEeccCCcccccCccccCCCCccEEEecCCCCCCCC----cceEEEeeceecc
Q 047314 52 RLLQVLDLEGVYMALLDSSVGNLIHLRYLDLRKTWLKKLPSSMGNLFNLQSLDLSSTLVDPIP----LLKHVCFNEFREM 127 (173)
Q Consensus 52 ~~L~~L~l~~n~l~~~~~~~~~l~~L~~l~l~~~~~~~~p~~l~~l~~L~~L~l~~~~~~~lp----~L~~L~l~~n~~~ 127 (173)
++|+.|++++|.++.+|.. .++|+.|++++|.++.+| .++.+++|++|++++|.+..+| +|+.|++++|.+.
T Consensus 111 ~~L~~L~l~~n~l~~l~~~---~~~L~~L~L~~n~l~~lp-~~~~l~~L~~L~l~~N~l~~lp~~~~~L~~L~L~~n~l~ 186 (454)
T 1jl5_A 111 QSLKSLLVDNNNLKALSDL---PPLLEYLGVSNNQLEKLP-ELQNSSFLKIIDVDNNSLKKLPDLPPSLEFIAAGNNQLE 186 (454)
T ss_dssp TTCCEEECCSSCCSCCCSC---CTTCCEEECCSSCCSSCC-CCTTCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCS
T ss_pred CCCcEEECCCCccCcccCC---CCCCCEEECcCCCCCCCc-ccCCCCCCCEEECCCCcCcccCCCcccccEEECcCCcCC
Confidence 4455555555554433221 146777777777777666 4677777777777777666655 6777777777666
Q ss_pred ccCCCCCCCccccceeec-------------------------cccccccCCCCCcCEEEEecee
Q 047314 128 VVNPPVEASLPNLQKLIG-------------------------TEMVCSSGRFSHLQFLKLSNIR 167 (173)
Q Consensus 128 ~~~lp~~~~l~~L~~L~l-------------------------~~~~~~l~~l~~L~~L~l~~~~ 167 (173)
.+|..+.+++|++|++ ..+| .++.+++|+.|+++++.
T Consensus 187 --~l~~~~~l~~L~~L~l~~N~l~~l~~~~~~L~~L~l~~n~l~~lp-~~~~l~~L~~L~l~~N~ 248 (454)
T 1jl5_A 187 --ELPELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILEELP-ELQNLPFLTTIYADNNL 248 (454)
T ss_dssp --SCCCCTTCTTCCEEECCSSCCSSCCCCCTTCCEEECCSSCCSSCC-CCTTCTTCCEEECCSSC
T ss_pred --cCccccCCCCCCEEECCCCcCCcCCCCcCcccEEECcCCcCCccc-ccCCCCCCCEEECCCCc
Confidence 4542255555555555 2334 35666777777776654
No 122
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.04 E-value=1.2e-09 Score=89.74 Aligned_cols=103 Identities=22% Similarity=0.227 Sum_probs=64.7
Q ss_pred CcccEEEecCcccccchhhhCCCCCCcEEeccCCcccccCccccCCCCccEEEecCCCCCCCC----cceEEEeeceecc
Q 047314 52 RLLQVLDLEGVYMALLDSSVGNLIHLRYLDLRKTWLKKLPSSMGNLFNLQSLDLSSTLVDPIP----LLKHVCFNEFREM 127 (173)
Q Consensus 52 ~~L~~L~l~~n~l~~~~~~~~~l~~L~~l~l~~~~~~~~p~~l~~l~~L~~L~l~~~~~~~lp----~L~~L~l~~n~~~ 127 (173)
++|++|++++|.++.+| ..+++|+.|++++|.++.+|. +.. +|+.|++++|.+..+| +|+.|++++|.+.
T Consensus 80 ~~L~~L~Ls~N~l~~ip---~~l~~L~~L~Ls~N~l~~ip~-l~~--~L~~L~Ls~N~l~~lp~~l~~L~~L~Ls~N~l~ 153 (571)
T 3cvr_A 80 PQITVLEITQNALISLP---ELPASLEYLDACDNRLSTLPE-LPA--SLKHLDVDNNQLTMLPELPALLEYINADNNQLT 153 (571)
T ss_dssp TTCSEEECCSSCCSCCC---CCCTTCCEEECCSSCCSCCCC-CCT--TCCEEECCSSCCSCCCCCCTTCCEEECCSSCCS
T ss_pred CCCCEEECcCCCCcccc---cccCCCCEEEccCCCCCCcch-hhc--CCCEEECCCCcCCCCCCcCccccEEeCCCCccC
Confidence 56777777777777666 345667777777777666665 443 6777777777665555 5677777777666
Q ss_pred ccCCCCCCCccccceeec-----cccccccCCCCCcCEEEEecee
Q 047314 128 VVNPPVEASLPNLQKLIG-----TEMVCSSGRFSHLQFLKLSNIR 167 (173)
Q Consensus 128 ~~~lp~~~~l~~L~~L~l-----~~~~~~l~~l~~L~~L~l~~~~ 167 (173)
.+|. .+++|+.|++ ..+|. +. ++|+.|+++++.
T Consensus 154 --~lp~--~l~~L~~L~Ls~N~L~~lp~-l~--~~L~~L~Ls~N~ 191 (571)
T 3cvr_A 154 --MLPE--LPTSLEVLSVRNNQLTFLPE-LP--ESLEALDVSTNL 191 (571)
T ss_dssp --CCCC--CCTTCCEEECCSSCCSCCCC-CC--TTCCEEECCSSC
T ss_pred --cCCC--cCCCcCEEECCCCCCCCcch-hh--CCCCEEECcCCC
Confidence 4544 4556666666 33444 33 566666666654
No 123
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.03 E-value=9e-10 Score=90.46 Aligned_cols=112 Identities=15% Similarity=0.045 Sum_probs=60.7
Q ss_pred cCCCcccEEEecCcccccchhhhCCCCCCcEEeccCCcccccCccc-----------------cCCCCccEEEecCCCCC
Q 047314 49 KECRLLQVLDLEGVYMALLDSSVGNLIHLRYLDLRKTWLKKLPSSM-----------------GNLFNLQSLDLSSTLVD 111 (173)
Q Consensus 49 ~~l~~L~~L~l~~n~l~~~~~~~~~l~~L~~l~l~~~~~~~~p~~l-----------------~~l~~L~~L~l~~~~~~ 111 (173)
..+++|++|++++|.++.+|. +.+ +|+.|++++|.++.+|..+ ..+++|+.|++++|.+.
T Consensus 97 ~~l~~L~~L~Ls~N~l~~ip~-l~~--~L~~L~Ls~N~l~~lp~~l~~L~~L~Ls~N~l~~lp~~l~~L~~L~Ls~N~L~ 173 (571)
T 3cvr_A 97 ELPASLEYLDACDNRLSTLPE-LPA--SLKHLDVDNNQLTMLPELPALLEYINADNNQLTMLPELPTSLEVLSVRNNQLT 173 (571)
T ss_dssp CCCTTCCEEECCSSCCSCCCC-CCT--TCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCS
T ss_pred cccCCCCEEEccCCCCCCcch-hhc--CCCEEECCCCcCCCCCCcCccccEEeCCCCccCcCCCcCCCcCEEECCCCCCC
Confidence 345666666666666665555 433 5555555555555444400 02344455555555444
Q ss_pred CCC----cceEEEeeceeccccCCCCCCCcccc-------ceeec-----cccccccCCCCCcCEEEEecee
Q 047314 112 PIP----LLKHVCFNEFREMVVNPPVEASLPNL-------QKLIG-----TEMVCSSGRFSHLQFLKLSNIR 167 (173)
Q Consensus 112 ~lp----~L~~L~l~~n~~~~~~lp~~~~l~~L-------~~L~l-----~~~~~~l~~l~~L~~L~l~~~~ 167 (173)
.+| +|+.|++++|.+. .+|.. ..+| +.|++ ..+|..+..+++|+.|+++++.
T Consensus 174 ~lp~l~~~L~~L~Ls~N~L~--~lp~~--~~~L~~~~~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~L~~N~ 241 (571)
T 3cvr_A 174 FLPELPESLEALDVSTNLLE--SLPAV--PVRNHHSEETEIFFRCRENRITHIPENILSLDPTCTIILEDNP 241 (571)
T ss_dssp CCCCCCTTCCEEECCSSCCS--SCCCC--C--------CCEEEECCSSCCCCCCGGGGGSCTTEEEECCSSS
T ss_pred CcchhhCCCCEEECcCCCCC--chhhH--HHhhhcccccceEEecCCCcceecCHHHhcCCCCCEEEeeCCc
Confidence 443 4555555555555 44443 0144 66766 4567767778888888877754
No 124
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.02 E-value=7.1e-10 Score=85.59 Aligned_cols=121 Identities=19% Similarity=0.093 Sum_probs=82.3
Q ss_pred ccccCCCcccEEEecCcccc-cchh-hhCCCCCCcE-EeccCCccccc-CccccCCCCccEEEecCCCCCCCC-------
Q 047314 46 FLAKECRLLQVLDLEGVYMA-LLDS-SVGNLIHLRY-LDLRKTWLKKL-PSSMGNLFNLQSLDLSSTLVDPIP------- 114 (173)
Q Consensus 46 ~~~~~l~~L~~L~l~~n~l~-~~~~-~~~~l~~L~~-l~l~~~~~~~~-p~~l~~l~~L~~L~l~~~~~~~lp------- 114 (173)
.+|.++++|++|++++|.+. .+|. .+.+++++.. +.+..|.+..+ |..+..+++|+.|++++|.+..+|
T Consensus 48 ~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~ 127 (350)
T 4ay9_X 48 GAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHS 127 (350)
T ss_dssp TSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCB
T ss_pred HHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCchhhhhccccccccccccccccCCchhhccc
Confidence 46788888888888888875 4544 3667777665 44556777766 456788888888888888665544
Q ss_pred ---------------------------cceEEEeeceeccccCCCCC-CCccccceeec------ccccc-ccCCCCCcC
Q 047314 115 ---------------------------LLKHVCFNEFREMVVNPPVE-ASLPNLQKLIG------TEMVC-SSGRFSHLQ 159 (173)
Q Consensus 115 ---------------------------~L~~L~l~~n~~~~~~lp~~-~~l~~L~~L~l------~~~~~-~l~~l~~L~ 159 (173)
.++.|++++|.+. .++.. ....+|+.+++ +.+|. .+..+++|+
T Consensus 128 ~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~--~i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~ 205 (350)
T 4ay9_X 128 LQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQ--EIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPV 205 (350)
T ss_dssp SSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCC--EECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCS
T ss_pred chhhhhhhccccccccccccchhhcchhhhhhcccccccc--CCChhhccccchhHHhhccCCcccCCCHHHhccCcccc
Confidence 3455666666666 45554 44455666665 44554 367888888
Q ss_pred EEEEeceee
Q 047314 160 FLKLSNIRV 168 (173)
Q Consensus 160 ~L~l~~~~~ 168 (173)
.|++++...
T Consensus 206 ~LdLs~N~l 214 (350)
T 4ay9_X 206 ILDISRTRI 214 (350)
T ss_dssp EEECTTSCC
T ss_pred hhhcCCCCc
Confidence 888887654
No 125
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=98.99 E-value=7.4e-11 Score=92.09 Aligned_cols=40 Identities=20% Similarity=0.164 Sum_probs=22.6
Q ss_pred cCCCcccEEEecCccccc-----chhhhCCCCCCcEEeccCCccc
Q 047314 49 KECRLLQVLDLEGVYMAL-----LDSSVGNLIHLRYLDLRKTWLK 88 (173)
Q Consensus 49 ~~l~~L~~L~l~~n~l~~-----~~~~~~~l~~L~~l~l~~~~~~ 88 (173)
..+++|++|++++|.++. +|..+..+++|+.|++++|.++
T Consensus 91 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~ 135 (386)
T 2ca6_A 91 LKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLG 135 (386)
T ss_dssp TTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCH
T ss_pred hhCCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCC
Confidence 455666666666665553 4445555556666666655554
No 126
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=98.99 E-value=1.6e-09 Score=75.82 Aligned_cols=88 Identities=22% Similarity=0.305 Sum_probs=76.9
Q ss_pred ccEEEecCcccccchhhhCCCCCCcEEeccCCccccc-CccccCCCCccEEEecCCCCCCCC--------cceEEEeece
Q 047314 54 LQVLDLEGVYMALLDSSVGNLIHLRYLDLRKTWLKKL-PSSMGNLFNLQSLDLSSTLVDPIP--------LLKHVCFNEF 124 (173)
Q Consensus 54 L~~L~l~~n~l~~~~~~~~~l~~L~~l~l~~~~~~~~-p~~l~~l~~L~~L~l~~~~~~~lp--------~L~~L~l~~n 124 (173)
-+.+++++|.++.+|..+. ++|+.|++++|.+..+ |..+..+++|+.|++++|.+..+| +|+.|++++|
T Consensus 14 ~~~l~~~~n~l~~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N 91 (174)
T 2r9u_A 14 QTLVNCQNIRLASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDN 91 (174)
T ss_dssp SSEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CcEEEeCCCCCCccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCC
Confidence 3689999999999888775 7899999999999976 567899999999999999877765 8999999999
Q ss_pred eccccCCCCC--CCccccceeec
Q 047314 125 REMVVNPPVE--ASLPNLQKLIG 145 (173)
Q Consensus 125 ~~~~~~lp~~--~~l~~L~~L~l 145 (173)
.+. .+|.. +.+++|++|++
T Consensus 92 ~l~--~l~~~~~~~l~~L~~L~L 112 (174)
T 2r9u_A 92 HLK--SIPRGAFDNLKSLTHIYL 112 (174)
T ss_dssp CCC--CCCTTTTTTCTTCSEEEC
T ss_pred ccc--eeCHHHhccccCCCEEEe
Confidence 999 67654 88999999998
No 127
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=98.98 E-value=3.6e-09 Score=87.74 Aligned_cols=70 Identities=19% Similarity=0.122 Sum_probs=40.4
Q ss_pred CcccEEEecCcccccchhhhCCCCCCcEEeccCCcccccCccccCCCCccEEEecCCCCCCCC----cceEEEeeceecc
Q 047314 52 RLLQVLDLEGVYMALLDSSVGNLIHLRYLDLRKTWLKKLPSSMGNLFNLQSLDLSSTLVDPIP----LLKHVCFNEFREM 127 (173)
Q Consensus 52 ~~L~~L~l~~n~l~~~~~~~~~l~~L~~l~l~~~~~~~~p~~l~~l~~L~~L~l~~~~~~~lp----~L~~L~l~~n~~~ 127 (173)
++|+.|++++|.++.+|. .+++|+.|++++|.++.+|. .+++|+.|++++|.+..+| +|+.|++++|.+.
T Consensus 61 ~~L~~L~L~~N~l~~lp~---~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N~l~~l~~~l~~L~~L~L~~N~l~ 134 (622)
T 3g06_A 61 AHITTLVIPDNNLTSLPA---LPPELRTLEVSGNQLTSLPV---LPPGLLELSIFSNPLTHLPALPSGLCKLWIFGNQLT 134 (622)
T ss_dssp TTCSEEEECSCCCSCCCC---CCTTCCEEEECSCCCSCCCC---CCTTCCEEEECSCCCCCCCCCCTTCCEEECCSSCCS
T ss_pred CCCcEEEecCCCCCCCCC---cCCCCCEEEcCCCcCCcCCC---CCCCCCEEECcCCcCCCCCCCCCCcCEEECCCCCCC
Confidence 466666666666665555 35566666666666665554 4455566666665555444 4555555555444
No 128
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=98.98 E-value=2e-09 Score=74.99 Aligned_cols=89 Identities=21% Similarity=0.287 Sum_probs=77.5
Q ss_pred cccEEEecCcccccchhhhCCCCCCcEEeccCCccccc-CccccCCCCccEEEecCCCCCCCC--------cceEEEeec
Q 047314 53 LLQVLDLEGVYMALLDSSVGNLIHLRYLDLRKTWLKKL-PSSMGNLFNLQSLDLSSTLVDPIP--------LLKHVCFNE 123 (173)
Q Consensus 53 ~L~~L~l~~n~l~~~~~~~~~l~~L~~l~l~~~~~~~~-p~~l~~l~~L~~L~l~~~~~~~lp--------~L~~L~l~~ 123 (173)
..+.+++++|.++.+|..+. .+++.|++++|.++.+ |..+..+++|+.|++++|.+..+| +|+.|++++
T Consensus 10 ~~~~l~~s~n~l~~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~ 87 (170)
T 3g39_A 10 SGTTVDCSGKSLASVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLND 87 (170)
T ss_dssp ETTEEECTTSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCCEEEeCCCCcCccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCC
Confidence 35789999999999888764 7899999999999977 567899999999999999887766 799999999
Q ss_pred eeccccCCCC-C-CCccccceeec
Q 047314 124 FREMVVNPPV-E-ASLPNLQKLIG 145 (173)
Q Consensus 124 n~~~~~~lp~-~-~~l~~L~~L~l 145 (173)
|.+. .++. . +.+++|+.|++
T Consensus 88 N~l~--~~~~~~~~~l~~L~~L~L 109 (170)
T 3g39_A 88 NQLK--SIPRGAFDNLKSLTHIWL 109 (170)
T ss_dssp SCCC--CCCTTTTTTCTTCCEEEC
T ss_pred CccC--EeCHHHhcCCCCCCEEEe
Confidence 9999 6765 4 88999999998
No 129
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=98.88 E-value=1.5e-10 Score=90.35 Aligned_cols=121 Identities=17% Similarity=0.091 Sum_probs=63.6
Q ss_pred cccCCCcccEEEecCcccc-cchh----hhCCC---------CCCcEEeccCCccc--ccC---ccccCCCCccEEEecC
Q 047314 47 LAKECRLLQVLDLEGVYMA-LLDS----SVGNL---------IHLRYLDLRKTWLK--KLP---SSMGNLFNLQSLDLSS 107 (173)
Q Consensus 47 ~~~~l~~L~~L~l~~n~l~-~~~~----~~~~l---------~~L~~l~l~~~~~~--~~p---~~l~~l~~L~~L~l~~ 107 (173)
.+..+++|++|++++|.++ ..+. .+..+ ++|+.|++++|.++ .+| ..+..+++|+.|++++
T Consensus 117 ~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~ 196 (386)
T 2ca6_A 117 FLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQ 196 (386)
T ss_dssp HHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCS
T ss_pred HHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCcCEEECcC
Confidence 4556667777777777665 2222 22223 56666666666654 223 3445566666666666
Q ss_pred CCCC-------------CCCcceEEEeeceeccc---cCCCCC-CCccccceeec----------ccccccc--CCCCCc
Q 047314 108 TLVD-------------PIPLLKHVCFNEFREMV---VNPPVE-ASLPNLQKLIG----------TEMVCSS--GRFSHL 158 (173)
Q Consensus 108 ~~~~-------------~lp~L~~L~l~~n~~~~---~~lp~~-~~l~~L~~L~l----------~~~~~~l--~~l~~L 158 (173)
|.++ .+++|+.|++++|.+.. ..+|.. ..+++|++|++ ..++..+ +.+++|
T Consensus 197 n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L 276 (386)
T 2ca6_A 197 NGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGL 276 (386)
T ss_dssp SCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCC
T ss_pred CCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCe
Confidence 6554 12256666666666531 033444 45556666655 0123333 225556
Q ss_pred CEEEEecee
Q 047314 159 QFLKLSNIR 167 (173)
Q Consensus 159 ~~L~l~~~~ 167 (173)
+.|+++++.
T Consensus 277 ~~L~L~~n~ 285 (386)
T 2ca6_A 277 QTLRLQYNE 285 (386)
T ss_dssp CEEECCSSC
T ss_pred EEEECcCCc
Confidence 666665544
No 130
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.86 E-value=7.8e-09 Score=79.39 Aligned_cols=80 Identities=19% Similarity=0.182 Sum_probs=69.6
Q ss_pred ccCCCcccEEEecC-cccccch-hhhCCCCCCcEEeccCCcccccC-ccccCCCCccEEEecCCCCCCCC-------cce
Q 047314 48 AKECRLLQVLDLEG-VYMALLD-SSVGNLIHLRYLDLRKTWLKKLP-SSMGNLFNLQSLDLSSTLVDPIP-------LLK 117 (173)
Q Consensus 48 ~~~l~~L~~L~l~~-n~l~~~~-~~~~~l~~L~~l~l~~~~~~~~p-~~l~~l~~L~~L~l~~~~~~~lp-------~L~ 117 (173)
+..+++|+.|++++ |.++.+| ..+..+++|+.|++++|.++.+| ..|..+++|+.|++++|.+..+| .|+
T Consensus 27 l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~L~ 106 (347)
T 2ifg_A 27 LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLSLQ 106 (347)
T ss_dssp SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCCSTTTCSCCCC
T ss_pred CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCccceeCHHHcccCCce
Confidence 78888999999996 9999655 56889999999999999999665 56799999999999999988887 589
Q ss_pred EEEeeceecc
Q 047314 118 HVCFNEFREM 127 (173)
Q Consensus 118 ~L~l~~n~~~ 127 (173)
.|++.+|.+.
T Consensus 107 ~l~l~~N~~~ 116 (347)
T 2ifg_A 107 ELVLSGNPLH 116 (347)
T ss_dssp EEECCSSCCC
T ss_pred EEEeeCCCcc
Confidence 9999998776
No 131
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.81 E-value=1.1e-08 Score=78.57 Aligned_cols=86 Identities=16% Similarity=0.114 Sum_probs=73.9
Q ss_pred EEEecCc-ccccchhhhCCCCCCcEEeccC-CcccccC-ccccCCCCccEEEecCCCCCCCC--------cceEEEeece
Q 047314 56 VLDLEGV-YMALLDSSVGNLIHLRYLDLRK-TWLKKLP-SSMGNLFNLQSLDLSSTLVDPIP--------LLKHVCFNEF 124 (173)
Q Consensus 56 ~L~l~~n-~l~~~~~~~~~l~~L~~l~l~~-~~~~~~p-~~l~~l~~L~~L~l~~~~~~~lp--------~L~~L~l~~n 124 (173)
.++.+++ .++.+|. +..+++|+.|++++ |.++.+| ..|+.+++|+.|++++|.+..++ +|+.|++++|
T Consensus 12 ~v~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N 90 (347)
T 2ifg_A 12 GLRCTRDGALDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFN 90 (347)
T ss_dssp CEECCSSCCCTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSS
T ss_pred EEEcCCCCCCCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCC
Confidence 4688888 8999999 99999999999996 9999776 57899999999999999876654 8999999999
Q ss_pred eccccCCCCC--CCccccceeec
Q 047314 125 REMVVNPPVE--ASLPNLQKLIG 145 (173)
Q Consensus 125 ~~~~~~lp~~--~~l~~L~~L~l 145 (173)
.+. .+|.. ..++ |+.|++
T Consensus 91 ~l~--~~~~~~~~~~~-L~~l~l 110 (347)
T 2ifg_A 91 ALE--SLSWKTVQGLS-LQELVL 110 (347)
T ss_dssp CCS--CCCSTTTCSCC-CCEEEC
T ss_pred ccc--eeCHHHcccCC-ceEEEe
Confidence 999 67765 4444 888888
No 132
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=98.79 E-value=1.1e-09 Score=84.94 Aligned_cols=117 Identities=16% Similarity=0.136 Sum_probs=65.3
Q ss_pred CcccEEEecCcccc-cchhh----hCCC-CCCcEEeccCCcccccCc-c----ccC-CCCccEEEecCCCCCC-------
Q 047314 52 RLLQVLDLEGVYMA-LLDSS----VGNL-IHLRYLDLRKTWLKKLPS-S----MGN-LFNLQSLDLSSTLVDP------- 112 (173)
Q Consensus 52 ~~L~~L~l~~n~l~-~~~~~----~~~l-~~L~~l~l~~~~~~~~p~-~----l~~-l~~L~~L~l~~~~~~~------- 112 (173)
++|++|++++|.++ ..+.. +..+ ++|+.|++++|.++..+. . +.. ..+|+.|++++|.++.
T Consensus 80 ~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~ 159 (362)
T 3goz_A 80 ANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELI 159 (362)
T ss_dssp TTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHH
T ss_pred CCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHH
Confidence 66777777777666 33332 2233 567777777776664432 2 222 2467777777776552
Q ss_pred -----CC-cceEEEeeceeccccCCCC----C-CCc-cccceeec-----cc-----cccccCC-CCCcCEEEEeceeee
Q 047314 113 -----IP-LLKHVCFNEFREMVVNPPV----E-ASL-PNLQKLIG-----TE-----MVCSSGR-FSHLQFLKLSNIRVE 169 (173)
Q Consensus 113 -----lp-~L~~L~l~~n~~~~~~lp~----~-~~l-~~L~~L~l-----~~-----~~~~l~~-l~~L~~L~l~~~~~~ 169 (173)
.+ +|+.|++++|.+.+ ..+. . ..+ ++|++|++ +. ++..+.. .++|+.|+++++...
T Consensus 160 ~~l~~~~~~L~~L~Ls~n~l~~-~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~ 238 (362)
T 3goz_A 160 QILAAIPANVNSLNLRGNNLAS-KNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLH 238 (362)
T ss_dssp HHHHTSCTTCCEEECTTSCGGG-SCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCC
T ss_pred HHHhcCCccccEeeecCCCCch-hhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCC
Confidence 22 67777777777663 2221 1 223 47777777 11 3444444 347777777776543
No 133
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=98.79 E-value=1.9e-08 Score=77.61 Aligned_cols=117 Identities=17% Similarity=0.077 Sum_probs=68.2
Q ss_pred ccccCCCcccEEEecCcccccchhh-hCCCC--------------------------CCcEEeccCCcccccCccccCCC
Q 047314 46 FLAKECRLLQVLDLEGVYMALLDSS-VGNLI--------------------------HLRYLDLRKTWLKKLPSSMGNLF 98 (173)
Q Consensus 46 ~~~~~l~~L~~L~l~~n~l~~~~~~-~~~l~--------------------------~L~~l~l~~~~~~~~p~~l~~l~ 98 (173)
..|..+++|++|++++|.++.+|.. +.... .++.|++++|+++.+|.......
T Consensus 98 ~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~i~~~~f~~~ 177 (350)
T 4ay9_X 98 EAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNSAFNGT 177 (350)
T ss_dssp TSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEECTTSSTTE
T ss_pred hhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccCCChhhcccc
Confidence 4677888888888888877644331 22222 34555555666665555544455
Q ss_pred CccEEEecC-CCCCCCC--------cceEEEeeceeccccCCCCC--CCccccceeec---cccccccCCCCCcCEEEEe
Q 047314 99 NLQSLDLSS-TLVDPIP--------LLKHVCFNEFREMVVNPPVE--ASLPNLQKLIG---TEMVCSSGRFSHLQFLKLS 164 (173)
Q Consensus 99 ~L~~L~l~~-~~~~~lp--------~L~~L~l~~n~~~~~~lp~~--~~l~~L~~L~l---~~~~~~l~~l~~L~~L~l~ 164 (173)
+|+.+++++ |.++.+| +|+.|++++|.+. .+|.. .+++.|+.++. ..+| .+.++++|+.+++.
T Consensus 178 ~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~--~lp~~~~~~L~~L~~l~~~~l~~lP-~l~~l~~L~~l~l~ 254 (350)
T 4ay9_X 178 QLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIH--SLPSYGLENLKKLRARSTYNLKKLP-TLEKLVALMEASLT 254 (350)
T ss_dssp EEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCC--CCCSSSCTTCCEEECTTCTTCCCCC-CTTTCCSCCEEECS
T ss_pred chhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcC--ccChhhhccchHhhhccCCCcCcCC-CchhCcChhhCcCC
Confidence 566666653 3455544 5667777777666 56553 44444444443 4455 36667777777764
Q ss_pred c
Q 047314 165 N 165 (173)
Q Consensus 165 ~ 165 (173)
+
T Consensus 255 ~ 255 (350)
T 4ay9_X 255 Y 255 (350)
T ss_dssp C
T ss_pred C
Confidence 3
No 134
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=98.75 E-value=2.1e-09 Score=83.33 Aligned_cols=123 Identities=14% Similarity=0.135 Sum_probs=72.4
Q ss_pred cccCCC-cccEEEecCcccc-cchhhhCCC-----CCCcEEeccCCcccccC-cc----ccCC-CCccEEEecCCCCCCC
Q 047314 47 LAKECR-LLQVLDLEGVYMA-LLDSSVGNL-----IHLRYLDLRKTWLKKLP-SS----MGNL-FNLQSLDLSSTLVDPI 113 (173)
Q Consensus 47 ~~~~l~-~L~~L~l~~n~l~-~~~~~~~~l-----~~L~~l~l~~~~~~~~p-~~----l~~l-~~L~~L~l~~~~~~~l 113 (173)
.+..++ +|+.|++++|.++ ..+..+..+ ++|+.|++++|.++..+ .. +..+ ++|+.|++++|.++..
T Consensus 45 ~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~ 124 (362)
T 3goz_A 45 AFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSK 124 (362)
T ss_dssp HHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGS
T ss_pred HHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcH
Confidence 455666 7777777777777 345555543 67777777777776433 22 3334 6777777777765443
Q ss_pred C-------------cceEEEeeceeccccCC---CCC-CCcc-ccceeec------cccc----cccCCC-CCcCEEEEe
Q 047314 114 P-------------LLKHVCFNEFREMVVNP---PVE-ASLP-NLQKLIG------TEMV----CSSGRF-SHLQFLKLS 164 (173)
Q Consensus 114 p-------------~L~~L~l~~n~~~~~~l---p~~-~~l~-~L~~L~l------~~~~----~~l~~l-~~L~~L~l~ 164 (173)
+ +|+.|++++|.+..... +.. ..++ +|++|++ ...+ ..+..+ ++|+.|+++
T Consensus 125 ~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls 204 (362)
T 3goz_A 125 SSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLS 204 (362)
T ss_dssp CHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECT
T ss_pred HHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECC
Confidence 2 67777777777763111 111 2333 7777777 1111 223444 478888877
Q ss_pred ceeee
Q 047314 165 NIRVE 169 (173)
Q Consensus 165 ~~~~~ 169 (173)
++...
T Consensus 205 ~N~i~ 209 (362)
T 3goz_A 205 ANLLG 209 (362)
T ss_dssp TSCGG
T ss_pred CCCCC
Confidence 76543
No 135
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=98.67 E-value=1.2e-09 Score=86.78 Aligned_cols=117 Identities=17% Similarity=-0.002 Sum_probs=54.0
Q ss_pred CCcccEEEecCccccc-----chhhhCCCCCCcEEeccCCccc-ccCcccc-----CCCCccEEEecCCCCCCC------
Q 047314 51 CRLLQVLDLEGVYMAL-----LDSSVGNLIHLRYLDLRKTWLK-KLPSSMG-----NLFNLQSLDLSSTLVDPI------ 113 (173)
Q Consensus 51 l~~L~~L~l~~n~l~~-----~~~~~~~l~~L~~l~l~~~~~~-~~p~~l~-----~l~~L~~L~l~~~~~~~l------ 113 (173)
+++|+.|++++|.++. ++..+..+++|+.|++++|.+. ..+..+. ..++|+.|++++|.+...
T Consensus 255 ~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~ 334 (461)
T 1z7x_W 255 SSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFS 334 (461)
T ss_dssp TCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHH
T ss_pred CCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHH
Confidence 4445555555554442 3344444455555555555443 1111111 113455555555544322
Q ss_pred ------CcceEEEeeceeccccCCC---CC--CCccccceeec-----c-----ccccccCCCCCcCEEEEecee
Q 047314 114 ------PLLKHVCFNEFREMVVNPP---VE--ASLPNLQKLIG-----T-----EMVCSSGRFSHLQFLKLSNIR 167 (173)
Q Consensus 114 ------p~L~~L~l~~n~~~~~~lp---~~--~~l~~L~~L~l-----~-----~~~~~l~~l~~L~~L~l~~~~ 167 (173)
++|+.|++++|.+.+.... .. ...++|+.|++ . .+|..+..+++|+.|+++++.
T Consensus 335 ~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~ 409 (461)
T 1z7x_W 335 SVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNC 409 (461)
T ss_dssp HHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSS
T ss_pred HHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCCCC
Confidence 2556666666655421111 11 11346666666 1 345555566667777766654
No 136
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=98.58 E-value=7.1e-09 Score=82.25 Aligned_cols=13 Identities=31% Similarity=0.181 Sum_probs=6.7
Q ss_pred CCCcCEEEEecee
Q 047314 155 FSHLQFLKLSNIR 167 (173)
Q Consensus 155 l~~L~~L~l~~~~ 167 (173)
.++|+.|+++++.
T Consensus 369 ~~~L~~L~L~~n~ 381 (461)
T 1z7x_W 369 GSVLRVLWLADCD 381 (461)
T ss_dssp TCCCCEEECTTSC
T ss_pred CCceEEEECCCCC
Confidence 4455555555543
No 137
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=98.48 E-value=9.7e-08 Score=78.00 Aligned_cols=74 Identities=19% Similarity=0.205 Sum_probs=41.4
Q ss_pred cCCCcccEEEecCcccc-c----chhhhCCCCCCcEEeccCCccc-----ccCccccCCCCccEEEecCCCCCCCC----
Q 047314 49 KECRLLQVLDLEGVYMA-L----LDSSVGNLIHLRYLDLRKTWLK-----KLPSSMGNLFNLQSLDLSSTLVDPIP---- 114 (173)
Q Consensus 49 ~~l~~L~~L~l~~n~l~-~----~~~~~~~l~~L~~l~l~~~~~~-----~~p~~l~~l~~L~~L~l~~~~~~~lp---- 114 (173)
..+++|++|++++|.++ . ++.....+++|+.|+++.|.++ .++..+..+++|+.|++++|.+..++
T Consensus 161 ~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~l~~~~~ 240 (592)
T 3ogk_B 161 THCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILELVGFFK 240 (592)
T ss_dssp HHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGGGHHHHH
T ss_pred hhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHHHHHHHh
Confidence 35667777777777654 2 2223344566666666666554 22333445666666666666544333
Q ss_pred ---cceEEEee
Q 047314 115 ---LLKHVCFN 122 (173)
Q Consensus 115 ---~L~~L~l~ 122 (173)
+|+.+.++
T Consensus 241 ~~~~L~~L~l~ 251 (592)
T 3ogk_B 241 AAANLEEFCGG 251 (592)
T ss_dssp HCTTCCEEEEC
T ss_pred hhhHHHhhccc
Confidence 55555554
No 138
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=98.45 E-value=4.4e-08 Score=80.03 Aligned_cols=118 Identities=16% Similarity=0.079 Sum_probs=65.0
Q ss_pred cccCCCcccEEEecCcccc-----cchhhhCCCCCCcEEeccCCcccccCccccCCCCccEEEec---------------
Q 047314 47 LAKECRLLQVLDLEGVYMA-----LLDSSVGNLIHLRYLDLRKTWLKKLPSSMGNLFNLQSLDLS--------------- 106 (173)
Q Consensus 47 ~~~~l~~L~~L~l~~n~l~-----~~~~~~~~l~~L~~l~l~~~~~~~~p~~l~~l~~L~~L~l~--------------- 106 (173)
.+..+++|+.|++++|.++ .++..+.++++|+.|+++++.+..+|..+..+++|+.++++
T Consensus 187 ~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l 266 (592)
T 3ogk_B 187 LAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNL 266 (592)
T ss_dssp HHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGGGHHHHHHCTTCCEEEECBCCCCTTCTTSSSCC
T ss_pred HHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHHHHHHHhhhhHHHhhcccccccccchHHHHHHh
Confidence 3445677777777777664 23333456677777777776665555555555555555554
Q ss_pred ------------CCCCCCCC-------cceEEEeeceeccccCCCCC-CCccccceeec------cccccccCCCCCcCE
Q 047314 107 ------------STLVDPIP-------LLKHVCFNEFREMVVNPPVE-ASLPNLQKLIG------TEMVCSSGRFSHLQF 160 (173)
Q Consensus 107 ------------~~~~~~lp-------~L~~L~l~~n~~~~~~lp~~-~~l~~L~~L~l------~~~~~~l~~l~~L~~ 160 (173)
++....+| +|+.|++++|.+.+..++.. +.+++|+.|++ ..++.....+++|++
T Consensus 267 ~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~ 346 (592)
T 3ogk_B 267 VFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKR 346 (592)
T ss_dssp CCCTTCCEEEETTCCTTTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCE
T ss_pred hccccccccCccccchhHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEeccCccCHHHHHHHHHhCCCCCE
Confidence 32222222 56666666666543222233 55666666665 122222345566666
Q ss_pred EEEe
Q 047314 161 LKLS 164 (173)
Q Consensus 161 L~l~ 164 (173)
|+++
T Consensus 347 L~L~ 350 (592)
T 3ogk_B 347 LRIE 350 (592)
T ss_dssp EEEE
T ss_pred EEee
Confidence 6666
No 139
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.33 E-value=1.3e-08 Score=79.35 Aligned_cols=117 Identities=14% Similarity=0.091 Sum_probs=68.5
Q ss_pred CcccEEEecCcccc-cchhhh-CCCCCCcEEeccCCccccc-Cccc-----cCCCCccEEEecCCCCCC-----------
Q 047314 52 RLLQVLDLEGVYMA-LLDSSV-GNLIHLRYLDLRKTWLKKL-PSSM-----GNLFNLQSLDLSSTLVDP----------- 112 (173)
Q Consensus 52 ~~L~~L~l~~n~l~-~~~~~~-~~l~~L~~l~l~~~~~~~~-p~~l-----~~l~~L~~L~l~~~~~~~----------- 112 (173)
++|+.|++++|.++ .....+ ..+.+|+.|++++|.++.. ...+ ...++|+.|++++|.++.
T Consensus 101 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~ 180 (372)
T 3un9_A 101 HALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLA 180 (372)
T ss_dssp SCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHH
T ss_pred CCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHh
Confidence 57777777777765 222222 2345677777777776522 2222 235667777777776633
Q ss_pred -CCcceEEEeeceeccccC---CCCC-CCccccceeec----------cccccccCCCCCcCEEEEeceee
Q 047314 113 -IPLLKHVCFNEFREMVVN---PPVE-ASLPNLQKLIG----------TEMVCSSGRFSHLQFLKLSNIRV 168 (173)
Q Consensus 113 -lp~L~~L~l~~n~~~~~~---lp~~-~~l~~L~~L~l----------~~~~~~l~~l~~L~~L~l~~~~~ 168 (173)
.++|++|++++|.+.... ++.. ...++|+.|++ ..++..+...++|+.|+++++..
T Consensus 181 ~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i 251 (372)
T 3un9_A 181 GNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNEL 251 (372)
T ss_dssp TCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSC
T ss_pred cCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCC
Confidence 336777777777766311 1222 44567777777 12333455567778888777654
No 140
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.28 E-value=5e-08 Score=76.10 Aligned_cols=118 Identities=17% Similarity=0.118 Sum_probs=65.4
Q ss_pred CCcccEEEecCcccc-cchhhh----CC-CCCCcEEeccCCccc-ccCccc-cCCCCccEEEecCCCCCC----------
Q 047314 51 CRLLQVLDLEGVYMA-LLDSSV----GN-LIHLRYLDLRKTWLK-KLPSSM-GNLFNLQSLDLSSTLVDP---------- 112 (173)
Q Consensus 51 l~~L~~L~l~~n~l~-~~~~~~----~~-l~~L~~l~l~~~~~~-~~p~~l-~~l~~L~~L~l~~~~~~~---------- 112 (173)
++.++.|++++|.++ .....+ .. ..+|+.|++++|.++ .....+ ..+.+|+.|++++|.++.
T Consensus 71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L 150 (372)
T 3un9_A 71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLL 150 (372)
T ss_dssp HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHH
T ss_pred HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHH
Confidence 345667777777766 222222 21 256777777777665 222222 334567777777776643
Q ss_pred ---CCcceEEEeeceeccccC---CCCC-CCccccceeec----------cccccccCCCCCcCEEEEeceee
Q 047314 113 ---IPLLKHVCFNEFREMVVN---PPVE-ASLPNLQKLIG----------TEMVCSSGRFSHLQFLKLSNIRV 168 (173)
Q Consensus 113 ---lp~L~~L~l~~n~~~~~~---lp~~-~~l~~L~~L~l----------~~~~~~l~~l~~L~~L~l~~~~~ 168 (173)
.+.|+.|++++|.+.... ++.. ...++|++|++ ..++..+...++|+.|+++++..
T Consensus 151 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i 223 (372)
T 3un9_A 151 LHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGA 223 (372)
T ss_dssp HSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCC
T ss_pred HhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCC
Confidence 125777777777665211 2222 34566777776 12244455666777777776654
No 141
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.26 E-value=2e-06 Score=65.63 Aligned_cols=65 Identities=22% Similarity=0.172 Sum_probs=36.0
Q ss_pred CCCccEEEecCCCCCCCC--------cceEEEeeceeccccCCCCC--CCccccc-eeec----ccc-ccccCCCCCcCE
Q 047314 97 LFNLQSLDLSSTLVDPIP--------LLKHVCFNEFREMVVNPPVE--ASLPNLQ-KLIG----TEM-VCSSGRFSHLQF 160 (173)
Q Consensus 97 l~~L~~L~l~~~~~~~lp--------~L~~L~l~~n~~~~~~lp~~--~~l~~L~-~L~l----~~~-~~~l~~l~~L~~ 160 (173)
+++|+.+++++|.+..+| +|+.+.+..| +. .++.. .++++|+ .+.+ ..+ +.++.++++|+.
T Consensus 225 ~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~--~I~~~aF~~~~~L~~~l~l~~~l~~I~~~aF~~c~~L~~ 301 (329)
T 3sb4_A 225 MPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LK--TIGQRVFSNCGRLAGTLELPASVTAIEFGAFMGCDNLRY 301 (329)
T ss_dssp CTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CC--EECTTTTTTCTTCCEEEEECTTCCEECTTTTTTCTTEEE
T ss_pred cCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cc--eehHHHhhCChhccEEEEEcccceEEchhhhhCCccCCE
Confidence 456666666665555444 5666666665 44 44433 5666666 6655 222 234566666666
Q ss_pred EEEe
Q 047314 161 LKLS 164 (173)
Q Consensus 161 L~l~ 164 (173)
+++.
T Consensus 302 l~l~ 305 (329)
T 3sb4_A 302 VLAT 305 (329)
T ss_dssp EEEC
T ss_pred EEeC
Confidence 6653
No 142
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=98.22 E-value=7.2e-08 Score=78.75 Aligned_cols=60 Identities=17% Similarity=0.176 Sum_probs=30.0
Q ss_pred CCCcccEEEecCcccc-cchhhhC-CCCCCcEEeccCC-cccc--cCccccCCCCccEEEecCCC
Q 047314 50 ECRLLQVLDLEGVYMA-LLDSSVG-NLIHLRYLDLRKT-WLKK--LPSSMGNLFNLQSLDLSSTL 109 (173)
Q Consensus 50 ~l~~L~~L~l~~n~l~-~~~~~~~-~l~~L~~l~l~~~-~~~~--~p~~l~~l~~L~~L~l~~~~ 109 (173)
.+++|+.|++++|.++ ..+..+. .+++|+.|++++| .++. ++..+..+++|+.|++++|.
T Consensus 103 ~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~ 167 (594)
T 2p1m_B 103 SYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESD 167 (594)
T ss_dssp HCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCE
T ss_pred hCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCc
Confidence 3455666666665555 3333333 3555666666555 3332 23333345556666665553
No 143
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.20 E-value=4.2e-06 Score=63.78 Aligned_cols=89 Identities=18% Similarity=0.089 Sum_probs=51.4
Q ss_pred CCcccEEEecCcccccchhh-hCCCCCCcEEeccCCcccccC-ccccCCCCcc-EEEecCCCCCCCC--------cceEE
Q 047314 51 CRLLQVLDLEGVYMALLDSS-VGNLIHLRYLDLRKTWLKKLP-SSMGNLFNLQ-SLDLSSTLVDPIP--------LLKHV 119 (173)
Q Consensus 51 l~~L~~L~l~~n~l~~~~~~-~~~l~~L~~l~l~~~~~~~~p-~~l~~l~~L~-~L~l~~~~~~~lp--------~L~~L 119 (173)
+++|+.+++.+|.++.+|.. |.++.+|+.++++.| ++.++ ..|..+.+|+ .+.+.+ .+..++ +|+.+
T Consensus 225 ~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l 302 (329)
T 3sb4_A 225 MPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYV 302 (329)
T ss_dssp CTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEE
T ss_pred cCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEE
Confidence 66777777777777655554 566777777777666 55554 4566677776 776665 332222 55555
Q ss_pred EeeceeccccCCCCC--CCcccccee
Q 047314 120 CFNEFREMVVNPPVE--ASLPNLQKL 143 (173)
Q Consensus 120 ~l~~n~~~~~~lp~~--~~l~~L~~L 143 (173)
.+..|.+. .++.. .++++|+.+
T Consensus 303 ~l~~n~i~--~I~~~aF~~~~~L~~l 326 (329)
T 3sb4_A 303 LATGDKIT--TLGDELFGNGVPSKLI 326 (329)
T ss_dssp EECSSCCC--EECTTTTCTTCCCCEE
T ss_pred EeCCCccC--ccchhhhcCCcchhhh
Confidence 55555554 33332 444444443
No 144
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=98.06 E-value=1.2e-06 Score=71.40 Aligned_cols=75 Identities=24% Similarity=0.251 Sum_probs=45.1
Q ss_pred CCCcccEEEecCc-cccc--chhhhCCCCCCcEEeccCCccccc-Cc----cccCCCCccEEEecCCC--CC--------
Q 047314 50 ECRLLQVLDLEGV-YMAL--LDSSVGNLIHLRYLDLRKTWLKKL-PS----SMGNLFNLQSLDLSSTL--VD-------- 111 (173)
Q Consensus 50 ~l~~L~~L~l~~n-~l~~--~~~~~~~l~~L~~l~l~~~~~~~~-p~----~l~~l~~L~~L~l~~~~--~~-------- 111 (173)
.+++|+.|++.+| .++. ++..+.++++|+.|++++|.++.. +. ....+++|+.|++++|. +.
T Consensus 128 ~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~ 207 (594)
T 2p1m_B 128 SFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLV 207 (594)
T ss_dssp HCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHH
T ss_pred hCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHH
Confidence 5677888888877 4552 333344677788888877765521 22 22355677777777765 11
Q ss_pred -CCCcceEEEeece
Q 047314 112 -PIPLLKHVCFNEF 124 (173)
Q Consensus 112 -~lp~L~~L~l~~n 124 (173)
..|+|+.|++++|
T Consensus 208 ~~~~~L~~L~L~~~ 221 (594)
T 2p1m_B 208 TRCPNLKSLKLNRA 221 (594)
T ss_dssp HHCTTCCEEECCTT
T ss_pred HhCCCCcEEecCCC
Confidence 1136677777665
No 145
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.06 E-value=1.3e-06 Score=67.88 Aligned_cols=120 Identities=20% Similarity=0.212 Sum_probs=76.0
Q ss_pred ccccCCCcccEEEecCcccccchhhhCCCCCCcEEeccCCccc-ccCccc--cCCCCccEEEecCC------C--C----
Q 047314 46 FLAKECRLLQVLDLEGVYMALLDSSVGNLIHLRYLDLRKTWLK-KLPSSM--GNLFNLQSLDLSST------L--V---- 110 (173)
Q Consensus 46 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~l~~L~~l~l~~~~~~-~~p~~l--~~l~~L~~L~l~~~------~--~---- 110 (173)
+.+..+++|+.|.+.++.-..++. + .+.+|+.|.+..+.+. .....+ ..+++|+.|+++.+ . +
T Consensus 166 ~ll~~~P~L~~L~L~g~~~l~l~~-~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~ 243 (362)
T 2ra8_A 166 PVLDAMPLLNNLKIKGTNNLSIGK-K-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFR 243 (362)
T ss_dssp HHHHTCTTCCEEEEECCBTCBCCS-C-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTG
T ss_pred HHHhcCCCCcEEEEeCCCCceecc-c-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHH
Confidence 455677888888888873123333 3 3778888888777665 222333 26788888887531 1 1
Q ss_pred -----CCCCcceEEEeeceeccccCCCC---C-CCccccceeec----------cccccccCCCCCcCEEEEeceee
Q 047314 111 -----DPIPLLKHVCFNEFREMVVNPPV---E-ASLPNLQKLIG----------TEMVCSSGRFSHLQFLKLSNIRV 168 (173)
Q Consensus 111 -----~~lp~L~~L~l~~n~~~~~~lp~---~-~~l~~L~~L~l----------~~~~~~l~~l~~L~~L~l~~~~~ 168 (173)
..+|+|+.|.+.+|.+.. ..+. . ..+++|++|++ ..++..+..+++|+.|+++.+..
T Consensus 244 ~~l~~~~~p~Lr~L~L~~~~i~~-~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i 319 (362)
T 2ra8_A 244 PLFSKDRFPNLKWLGIVDAEEQN-VVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYL 319 (362)
T ss_dssp GGSCTTTCTTCCEEEEESCTTHH-HHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBC
T ss_pred HHHhcCCCCCcCEEeCCCCCCch-HHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcC
Confidence 134688899888887663 2211 1 45788888888 12333445678899998887754
No 146
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.95 E-value=1.3e-06 Score=65.06 Aligned_cols=97 Identities=20% Similarity=0.148 Sum_probs=61.2
Q ss_pred ccCCCcccE--EEecCcccccchhh----hCCCCCCcEEeccCCccccc---CccccCCCCccEEEecCCCCCCCC----
Q 047314 48 AKECRLLQV--LDLEGVYMALLDSS----VGNLIHLRYLDLRKTWLKKL---PSSMGNLFNLQSLDLSSTLVDPIP---- 114 (173)
Q Consensus 48 ~~~l~~L~~--L~l~~n~l~~~~~~----~~~l~~L~~l~l~~~~~~~~---p~~l~~l~~L~~L~l~~~~~~~lp---- 114 (173)
+...+.|.. +++..|....++.. ..++++|+.|++++|.++.+ |..+..+++|+.|++++|.+..+.
T Consensus 137 l~~dp~L~~~~l~l~~N~~~~~~~~l~i~~~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~l~~ 216 (267)
T 3rw6_A 137 LRSDPDLVAQNIDVVLNRRSCMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDK 216 (267)
T ss_dssp GGGCHHHHHTTCCCCTTSHHHHHHHHHHHHHHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGGGGGG
T ss_pred cCCCcchhhcCccccCCHHHHHHHHHHHHHhhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCchhhhh
Confidence 444444544 55566643322221 23578888889888887744 355567888888888888776543
Q ss_pred ----cceEEEeeceeccccCCCC-------C-CCccccceeec
Q 047314 115 ----LLKHVCFNEFREMVVNPPV-------E-ASLPNLQKLIG 145 (173)
Q Consensus 115 ----~L~~L~l~~n~~~~~~lp~-------~-~~l~~L~~L~l 145 (173)
+|+.|++.+|.+.+ .+|. . ..+|+|+.||-
T Consensus 217 l~~l~L~~L~L~~Npl~~-~~~~~~~y~~~il~~~P~L~~LDg 258 (267)
T 3rw6_A 217 IKGLKLEELWLDGNSLCD-TFRDQSTYISAIRERFPKLLRLDG 258 (267)
T ss_dssp GTTSCCSEEECTTSTTGG-GCSSHHHHHHHHHHHCTTCCEESS
T ss_pred cccCCcceEEccCCcCcc-ccCcchhHHHHHHHHCcccCeECC
Confidence 67788888888775 4442 1 45555655553
No 147
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.84 E-value=2.3e-06 Score=60.14 Aligned_cols=82 Identities=11% Similarity=0.072 Sum_probs=60.1
Q ss_pred ccccCCCcccEEEecCc-ccc-----cchhhhCCCCCCcEEeccCCcccc-----cCccccCCCCccEEEecCCCCCCCC
Q 047314 46 FLAKECRLLQVLDLEGV-YMA-----LLDSSVGNLIHLRYLDLRKTWLKK-----LPSSMGNLFNLQSLDLSSTLVDPIP 114 (173)
Q Consensus 46 ~~~~~l~~L~~L~l~~n-~l~-----~~~~~~~~l~~L~~l~l~~~~~~~-----~p~~l~~l~~L~~L~l~~~~~~~lp 114 (173)
..+...+.|+.|++++| .+. .+...+...++|+.|++++|.+.. +...+...+.|+.|++++|.++.-.
T Consensus 30 ~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g 109 (185)
T 1io0_A 30 RIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSG 109 (185)
T ss_dssp HHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHH
T ss_pred HHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHH
Confidence 45667788999999998 776 245556677889999999988762 3445556678899999988776521
Q ss_pred ------------cceEEEe--eceecc
Q 047314 115 ------------LLKHVCF--NEFREM 127 (173)
Q Consensus 115 ------------~L~~L~l--~~n~~~ 127 (173)
+|+.|++ ++|.+.
T Consensus 110 ~~~l~~~L~~n~~L~~L~L~~~~N~i~ 136 (185)
T 1io0_A 110 ILALVEALQSNTSLIELRIDNQSQPLG 136 (185)
T ss_dssp HHHHHHGGGGCSSCCEEECCCCSSCCC
T ss_pred HHHHHHHHHhCCCceEEEecCCCCCCC
Confidence 6888888 667665
No 148
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=97.81 E-value=6.6e-05 Score=58.99 Aligned_cols=62 Identities=18% Similarity=0.154 Sum_probs=43.4
Q ss_pred ccccCCCcccEEEecCcccccchhhhCCCCCCcEEeccCCcccccC-ccccCCCCccEEEecCC
Q 047314 46 FLAKECRLLQVLDLEGVYMALLDSSVGNLIHLRYLDLRKTWLKKLP-SSMGNLFNLQSLDLSST 108 (173)
Q Consensus 46 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~l~~L~~l~l~~~~~~~~p-~~l~~l~~L~~L~l~~~ 108 (173)
.+|.++.+|+.+++..|.++.++.......+|+.+.+..+ +..++ ..|..+++|+.+.+..+
T Consensus 174 ~aF~~c~~L~~l~l~~n~l~~I~~~aF~~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~ 236 (401)
T 4fdw_A 174 DIFYYCYNLKKADLSKTKITKLPASTFVYAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN 236 (401)
T ss_dssp STTTTCTTCCEEECTTSCCSEECTTTTTTCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT
T ss_pred HHhhCcccCCeeecCCCcceEechhhEeecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC
Confidence 5788888999999988887766665444567777777644 55443 45667777777777653
No 149
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.63 E-value=2.3e-05 Score=54.70 Aligned_cols=33 Identities=15% Similarity=0.128 Sum_probs=18.4
Q ss_pred cccEEEecCcccc-cchhhhCCCCCCcEEeccCC
Q 047314 53 LLQVLDLEGVYMA-LLDSSVGNLIHLRYLDLRKT 85 (173)
Q Consensus 53 ~L~~L~l~~n~l~-~~~~~~~~l~~L~~l~l~~~ 85 (173)
+|+.|+++++.++ .-...+..+++|+.|+++++
T Consensus 62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C 95 (176)
T 3e4g_A 62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKC 95 (176)
T ss_dssp CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESC
T ss_pred eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCC
Confidence 4566666666655 33344555556666666554
No 150
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.61 E-value=2.1e-05 Score=55.14 Aligned_cols=82 Identities=12% Similarity=0.088 Sum_probs=65.0
Q ss_pred ccccCCCcccEEEecCcccc-c----chhhhCCCCCCcEEeccCCcccc-----cCccccCCCCccEEEe--cCCCCCCC
Q 047314 46 FLAKECRLLQVLDLEGVYMA-L----LDSSVGNLIHLRYLDLRKTWLKK-----LPSSMGNLFNLQSLDL--SSTLVDPI 113 (173)
Q Consensus 46 ~~~~~l~~L~~L~l~~n~l~-~----~~~~~~~l~~L~~l~l~~~~~~~-----~p~~l~~l~~L~~L~l--~~~~~~~l 113 (173)
..+...++|++|++++|.+. . +...+...+.|+.|++++|.+.. +...+...+.|+.|++ ++|.++.-
T Consensus 59 ~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~ 138 (185)
T 1io0_A 59 EALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNN 138 (185)
T ss_dssp HHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHH
T ss_pred HHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHH
Confidence 55667789999999999987 2 34445566889999999999883 4567777889999999 88887652
Q ss_pred C------------cceEEEeeceecc
Q 047314 114 P------------LLKHVCFNEFREM 127 (173)
Q Consensus 114 p------------~L~~L~l~~n~~~ 127 (173)
. +|+.|++++|.+.
T Consensus 139 g~~~l~~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 139 VEMEIANMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp HHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred HHHHHHHHHHhCCCcCEEeccCCCCC
Confidence 1 7899999988775
No 151
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.56 E-value=7.9e-05 Score=55.43 Aligned_cols=62 Identities=23% Similarity=0.193 Sum_probs=50.1
Q ss_pred cCCCcccEEEecCcccccc---hhhhCCCCCCcEEeccCCcccccCccccCCC--CccEEEecCCCCC
Q 047314 49 KECRLLQVLDLEGVYMALL---DSSVGNLIHLRYLDLRKTWLKKLPSSMGNLF--NLQSLDLSSTLVD 111 (173)
Q Consensus 49 ~~l~~L~~L~l~~n~l~~~---~~~~~~l~~L~~l~l~~~~~~~~p~~l~~l~--~L~~L~l~~~~~~ 111 (173)
..+++|+.|++++|.++.+ |..+..+++|+.|++++|.+..+ ..+..+. +|+.|++++|.+.
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~-~~l~~l~~l~L~~L~L~~Npl~ 233 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE-RELDKIKGLKLEELWLDGNSLC 233 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG-GGGGGGTTSCCSEEECTTSTTG
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc-hhhhhcccCCcceEEccCCcCc
Confidence 4688999999999999854 35567899999999999999865 2344444 8999999999764
No 152
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=97.49 E-value=0.00022 Score=55.27 Aligned_cols=119 Identities=18% Similarity=0.077 Sum_probs=76.8
Q ss_pred ccCCCcccEEEecCcccc----------cchhhhCCCCCCcEEeccCCcccccCccccCCCCccEEEecCCCCC------
Q 047314 48 AKECRLLQVLDLEGVYMA----------LLDSSVGNLIHLRYLDLRKTWLKKLPSSMGNLFNLQSLDLSSTLVD------ 111 (173)
Q Consensus 48 ~~~l~~L~~L~l~~n~l~----------~~~~~~~~l~~L~~l~l~~~~~~~~p~~l~~l~~L~~L~l~~~~~~------ 111 (173)
...+++|+.|.+...... .+...+..+++|+.|.++++....++. + .+++|+.|.+..|.+.
T Consensus 135 ~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l~l~~-~-~~~~L~~L~L~~~~l~~~~l~~ 212 (362)
T 2ra8_A 135 KEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNLSIGK-K-PRPNLKSLEIISGGLPDSVVED 212 (362)
T ss_dssp HHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTCBCCS-C-BCTTCSEEEEECSBCCHHHHHH
T ss_pred hhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCceecc-c-cCCCCcEEEEecCCCChHHHHH
Confidence 456788999988654321 244455678899999998774234444 3 3789999999888553
Q ss_pred ----CCCcceEEEeec--eecccc----CCCC-C--CCccccceeec--cc----cccc---cCCCCCcCEEEEeceee
Q 047314 112 ----PIPLLKHVCFNE--FREMVV----NPPV-E--ASLPNLQKLIG--TE----MVCS---SGRFSHLQFLKLSNIRV 168 (173)
Q Consensus 112 ----~lp~L~~L~l~~--n~~~~~----~lp~-~--~~l~~L~~L~l--~~----~~~~---l~~l~~L~~L~l~~~~~ 168 (173)
.+|+|+.|+++. +...+. .+.. . +.+|+|++|++ .. .+.. .+.+++|+.|+++.+..
T Consensus 213 l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L 291 (362)
T 2ra8_A 213 ILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVL 291 (362)
T ss_dssp HHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCC
T ss_pred HHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCC
Confidence 567999998863 221110 1111 1 45789999998 11 1112 24688999999987543
No 153
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.44 E-value=7.6e-05 Score=52.07 Aligned_cols=71 Identities=10% Similarity=0.036 Sum_probs=51.9
Q ss_pred CCCcEEeccCCccc-ccCccccCCCCccEEEecCCC-CCC--------C----CcceEEEeecee-ccccCCCCCCCccc
Q 047314 75 IHLRYLDLRKTWLK-KLPSSMGNLFNLQSLDLSSTL-VDP--------I----PLLKHVCFNEFR-EMVVNPPVEASLPN 139 (173)
Q Consensus 75 ~~L~~l~l~~~~~~-~~p~~l~~l~~L~~L~l~~~~-~~~--------l----p~L~~L~l~~n~-~~~~~lp~~~~l~~ 139 (173)
..|+.++++++.++ .--..+..+++|+.|++++|. ++. . ++|++|++++|. ++...+.....+++
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~ 140 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRN 140 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTT
T ss_pred ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCC
Confidence 47999999998887 334567889999999999993 543 2 158999999985 55312221256899
Q ss_pred cceeec
Q 047314 140 LQKLIG 145 (173)
Q Consensus 140 L~~L~l 145 (173)
|++|++
T Consensus 141 L~~L~L 146 (176)
T 3e4g_A 141 LKYLFL 146 (176)
T ss_dssp CCEEEE
T ss_pred CCEEEC
Confidence 999988
No 154
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=97.38 E-value=0.00078 Score=52.87 Aligned_cols=114 Identities=8% Similarity=0.028 Sum_probs=65.9
Q ss_pred ccccCCCcccEEEecCcccccchhh-hCCCCCCcEEeccCCccccc-CccccCCCCccEEEecCCCCC-----CCC----
Q 047314 46 FLAKECRLLQVLDLEGVYMALLDSS-VGNLIHLRYLDLRKTWLKKL-PSSMGNLFNLQSLDLSSTLVD-----PIP---- 114 (173)
Q Consensus 46 ~~~~~l~~L~~L~l~~n~l~~~~~~-~~~l~~L~~l~l~~~~~~~~-p~~l~~l~~L~~L~l~~~~~~-----~lp---- 114 (173)
.+|.++++|+.+.+..+ ++.++.. |.+ .+|+.+.+.. .+..+ +..|..|++|+.+.+.++.+. .++
T Consensus 220 ~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~lp~-~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF 296 (401)
T 4fdw_A 220 QAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKLPN-GVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCL 296 (401)
T ss_dssp TTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEEEET-TCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTT
T ss_pred hHhhCCCCCCEEecCCC-ccCcccccccc-CCccEEEeCC-CccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHh
Confidence 45667777777777654 3433332 333 5666666643 34544 345677777777777665432 122
Q ss_pred ----cceEEEeeceeccccCCCCC--CCccccceeec----ccc-ccccCCCCCcCEEEEece
Q 047314 115 ----LLKHVCFNEFREMVVNPPVE--ASLPNLQKLIG----TEM-VCSSGRFSHLQFLKLSNI 166 (173)
Q Consensus 115 ----~L~~L~l~~n~~~~~~lp~~--~~l~~L~~L~l----~~~-~~~l~~l~~L~~L~l~~~ 166 (173)
+|+.+.+.. .+. .++.. .++++|+.+.+ ..+ ..++.++ +|+.+.+.+.
T Consensus 297 ~~c~~L~~l~l~~-~i~--~I~~~aF~~c~~L~~l~lp~~l~~I~~~aF~~~-~L~~l~l~~n 355 (401)
T 4fdw_A 297 EGCPKLARFEIPE-SIR--ILGQGLLGGNRKVTQLTIPANVTQINFSAFNNT-GIKEVKVEGT 355 (401)
T ss_dssp TTCTTCCEECCCT-TCC--EECTTTTTTCCSCCEEEECTTCCEECTTSSSSS-CCCEEEECCS
T ss_pred hCCccCCeEEeCC-ceE--EEhhhhhcCCCCccEEEECccccEEcHHhCCCC-CCCEEEEcCC
Confidence 677777663 344 44443 66677777776 222 3346667 7777777654
No 155
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=96.42 E-value=0.014 Score=45.28 Aligned_cols=115 Identities=15% Similarity=0.178 Sum_probs=64.8
Q ss_pred ccccCCCcccEEEecCcccccchhhhCCCCCCcEEeccCCcccccC-ccccCCCCccEEEecCC--CCCC-----CCcce
Q 047314 46 FLAKECRLLQVLDLEGVYMALLDSSVGNLIHLRYLDLRKTWLKKLP-SSMGNLFNLQSLDLSST--LVDP-----IPLLK 117 (173)
Q Consensus 46 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~l~~L~~l~l~~~~~~~~p-~~l~~l~~L~~L~l~~~--~~~~-----lp~L~ 117 (173)
.+|..+..|+.+.+..+..+--...+.++..|+.+.+.. .+..++ ..|..|.+|+.+.+..+ .++. ..+|+
T Consensus 259 ~aF~~c~~L~~i~lp~~~~~I~~~aF~~c~~L~~i~l~~-~i~~I~~~aF~~c~~L~~i~lp~~v~~I~~~aF~~C~~L~ 337 (394)
T 4gt6_A 259 HAFDSCAYLASVKMPDSVVSIGTGAFMNCPALQDIEFSS-RITELPESVFAGCISLKSIDIPEGITQILDDAFAGCEQLE 337 (394)
T ss_dssp TTTTTCSSCCEEECCTTCCEECTTTTTTCTTCCEEECCT-TCCEECTTTTTTCTTCCEEECCTTCCEECTTTTTTCTTCC
T ss_pred ceeeecccccEEecccccceecCcccccccccccccCCC-cccccCceeecCCCCcCEEEeCCcccEehHhHhhCCCCCC
Confidence 467777778877776554333334466777788877753 355554 45677788888887654 1211 11677
Q ss_pred EEEeeceeccccCCCCC--CCccccceeec-c--ccccccCCCCCcCEEEEe
Q 047314 118 HVCFNEFREMVVNPPVE--ASLPNLQKLIG-T--EMVCSSGRFSHLQFLKLS 164 (173)
Q Consensus 118 ~L~l~~n~~~~~~lp~~--~~l~~L~~L~l-~--~~~~~l~~l~~L~~L~l~ 164 (173)
.+.+..+ +. .+... .++++|+.+.+ + .....+..+..|+.+.+.
T Consensus 338 ~i~ip~s-v~--~I~~~aF~~C~~L~~i~~~~~~~~~~~~~~~~~L~~i~i~ 386 (394)
T 4gt6_A 338 RIAIPSS-VT--KIPESAFSNCTALNNIEYSGSRSQWNAISTDSGLQNLPVA 386 (394)
T ss_dssp EEEECTT-CC--BCCGGGGTTCTTCCEEEESSCHHHHHTCBCCCCC------
T ss_pred EEEECcc-cC--EEhHhHhhCCCCCCEEEECCceeehhhhhccCCCCEEEeC
Confidence 7777543 44 45443 67777777776 1 112235556666666554
No 156
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.38 E-value=0.0062 Score=40.02 Aligned_cols=55 Identities=18% Similarity=0.170 Sum_probs=40.0
Q ss_pred cEEEecCcccc--cchhhhCCCCCCcEEeccCCcccccCc-cccCCCCccEEEecCCCCC
Q 047314 55 QVLDLEGVYMA--LLDSSVGNLIHLRYLDLRKTWLKKLPS-SMGNLFNLQSLDLSSTLVD 111 (173)
Q Consensus 55 ~~L~l~~n~l~--~~~~~~~~l~~L~~l~l~~~~~~~~p~-~l~~l~~L~~L~l~~~~~~ 111 (173)
..++-+++.++ .+|..+. .+++.|++++|.++.+|. .|..+++|+.|++.+|.+.
T Consensus 11 ~~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 11 TLVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp TEEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred CEEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence 36777777777 7776532 358888888888887765 4577888888888887543
No 157
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=95.75 E-value=0.039 Score=42.73 Aligned_cols=114 Identities=11% Similarity=0.046 Sum_probs=59.7
Q ss_pred ccccCCCcccEEEecCcccccchhhhCCCCCCcEEeccCCcccccCccccCCCCccEEEecCCCCCCC--------Ccce
Q 047314 46 FLAKECRLLQVLDLEGVYMALLDSSVGNLIHLRYLDLRKTWLKKLPSSMGNLFNLQSLDLSSTLVDPI--------PLLK 117 (173)
Q Consensus 46 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~l~~L~~l~l~~~~~~~~p~~l~~l~~L~~L~l~~~~~~~l--------p~L~ 117 (173)
..+..+..++.+.+..+........+.....++.+....+.+. ...+..+.+|+.+.+..+ +..+ .+|+
T Consensus 247 ~~f~~~~~l~~~~~~~~~~~i~~~~F~~~~~l~~~~~~~~~i~--~~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~ 323 (394)
T 4fs7_A 247 SVFYGCTDLESISIQNNKLRIGGSLFYNCSGLKKVIYGSVIVP--EKTFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLV 323 (394)
T ss_dssp STTTTCSSCCEEEECCTTCEECSCTTTTCTTCCEEEECSSEEC--TTTTTTCTTCCEEEECTT-CCEECTTTTTTCTTCC
T ss_pred ccccccccceeEEcCCCcceeeccccccccccceeccCceeec--cccccccccccccccccc-cceechhhhcCCCCCC
Confidence 4677778888888776643333334555566666555443221 123455566666666543 1111 1566
Q ss_pred EEEeeceeccccCCCCC--CCccccceeec----ccc-ccccCCCCCcCEEEEec
Q 047314 118 HVCFNEFREMVVNPPVE--ASLPNLQKLIG----TEM-VCSSGRFSHLQFLKLSN 165 (173)
Q Consensus 118 ~L~l~~n~~~~~~lp~~--~~l~~L~~L~l----~~~-~~~l~~l~~L~~L~l~~ 165 (173)
.+.+..+ +. .+... .++.+|+.+.+ ..+ ..++.++++|+++++..
T Consensus 324 ~i~lp~~-v~--~I~~~aF~~c~~L~~i~lp~~l~~I~~~aF~~C~~L~~i~lp~ 375 (394)
T 4fs7_A 324 SIDLPYL-VE--EIGKRSFRGCTSLSNINFPLSLRKIGANAFQGCINLKKVELPK 375 (394)
T ss_dssp EECCCTT-CC--EECTTTTTTCTTCCEECCCTTCCEECTTTBTTCTTCCEEEEEG
T ss_pred EEEeCCc-cc--EEhHHhccCCCCCCEEEECccccEehHHHhhCCCCCCEEEECC
Confidence 6655432 33 33332 55666666666 222 22466666777666643
No 158
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=95.71 E-value=0.046 Score=41.93 Aligned_cols=14 Identities=14% Similarity=0.216 Sum_probs=6.2
Q ss_pred cCCCCccEEEecCC
Q 047314 95 GNLFNLQSLDLSST 108 (173)
Q Consensus 95 ~~l~~L~~L~l~~~ 108 (173)
..+.+|+.+.+.++
T Consensus 283 ~~c~~L~~i~l~~~ 296 (379)
T 4h09_A 283 SGCSNLTKVVMDNS 296 (379)
T ss_dssp TTCTTCCEEEECCT
T ss_pred cccccccccccccc
Confidence 44444444444433
No 159
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=95.35 E-value=0.0048 Score=50.27 Aligned_cols=34 Identities=9% Similarity=0.204 Sum_probs=29.3
Q ss_pred CcccccCCccc-----cceeEeCHHHHHHHHHhccccce
Q 047314 1 MELIERSMVQP-----IKTIQVHDLLRELAISKAKEDRF 34 (173)
Q Consensus 1 ~~l~~r~l~~~-----~~~~~~h~~~~~~~~~~~~~~~~ 34 (173)
++|++|||++. ..+|+|||+++++|..++.++++
T Consensus 435 ~~L~~rsLl~~~~~~~~~~~~mHdlv~~~a~~~~~~~~~ 473 (549)
T 2a5y_B 435 KRLSKRGALLSGKRMPVLTFKIDHIIHMFLKHVVDAQTI 473 (549)
T ss_dssp HHTTTBSSCSEEECSSSCEEECCHHHHHHHHTTSCTHHH
T ss_pred HHHHHcCCeeEecCCCceEEEeChHHHHHHHHHHHHHHH
Confidence 47999999997 35799999999999999887664
No 160
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=95.27 E-value=0.13 Score=39.78 Aligned_cols=93 Identities=19% Similarity=0.129 Sum_probs=42.2
Q ss_pred ccccCCCcccEEEecCcccccchhhhCCCCCCcEEeccCCcccccC-ccccCCCCccEEEecCCCCCCCC--------cc
Q 047314 46 FLAKECRLLQVLDLEGVYMALLDSSVGNLIHLRYLDLRKTWLKKLP-SSMGNLFNLQSLDLSSTLVDPIP--------LL 116 (173)
Q Consensus 46 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~l~~L~~l~l~~~~~~~~p-~~l~~l~~L~~L~l~~~~~~~lp--------~L 116 (173)
..|..+..++.+......+.. ..+....+|+.+.+..+ ++.++ ..|..+.+|+.+.+..+ +..++ +|
T Consensus 270 ~~F~~~~~l~~~~~~~~~i~~--~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L 345 (394)
T 4fs7_A 270 SLFYNCSGLKKVIYGSVIVPE--KTFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSL 345 (394)
T ss_dssp CTTTTCTTCCEEEECSSEECT--TTTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTC
T ss_pred cccccccccceeccCceeecc--ccccccccccccccccc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCC
Confidence 345555555555554433221 12344555555555433 33332 34455555655555432 22111 45
Q ss_pred eEEEeeceeccccCCCCC--CCccccceeec
Q 047314 117 KHVCFNEFREMVVNPPVE--ASLPNLQKLIG 145 (173)
Q Consensus 117 ~~L~l~~n~~~~~~lp~~--~~l~~L~~L~l 145 (173)
+.+.+..+ +. .+... .++++|+.+.+
T Consensus 346 ~~i~lp~~-l~--~I~~~aF~~C~~L~~i~l 373 (394)
T 4fs7_A 346 SNINFPLS-LR--KIGANAFQGCINLKKVEL 373 (394)
T ss_dssp CEECCCTT-CC--EECTTTBTTCTTCCEEEE
T ss_pred CEEEECcc-cc--EehHHHhhCCCCCCEEEE
Confidence 55555443 32 33322 45555555555
No 161
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=95.15 E-value=0.019 Score=37.63 Aligned_cols=36 Identities=22% Similarity=0.145 Sum_probs=31.9
Q ss_pred cccEEEecCcccccchhh-hCCCCCCcEEeccCCccc
Q 047314 53 LLQVLDLEGVYMALLDSS-VGNLIHLRYLDLRKTWLK 88 (173)
Q Consensus 53 ~L~~L~l~~n~l~~~~~~-~~~l~~L~~l~l~~~~~~ 88 (173)
+++.|+|++|.|+.+|.. +..+++|+.+++++|.+.
T Consensus 32 ~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 32 DTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp TCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred CCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence 699999999999987776 677999999999999776
No 162
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=95.10 E-value=0.14 Score=39.18 Aligned_cols=115 Identities=11% Similarity=0.078 Sum_probs=76.3
Q ss_pred ccccCCCcccEEEecCcccccchhhhCCCCCCcEEeccCCcccccC-ccccCCCCccEEEecCCCCCC--------CCcc
Q 047314 46 FLAKECRLLQVLDLEGVYMALLDSSVGNLIHLRYLDLRKTWLKKLP-SSMGNLFNLQSLDLSSTLVDP--------IPLL 116 (173)
Q Consensus 46 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~l~~L~~l~l~~~~~~~~p-~~l~~l~~L~~L~l~~~~~~~--------lp~L 116 (173)
..+..+..++.+.+..+--..-...+.....|+.+.+..+ ++.+. ..+..+.+|+.+.+..+ +.. ..+|
T Consensus 211 ~~f~~~~~l~~i~~~~~~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L 288 (379)
T 4h09_A 211 YGFSYGKNLKKITITSGVTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNL 288 (379)
T ss_dssp TTTTTCSSCSEEECCTTCCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTC
T ss_pred cccccccccceeeeccceeEEccccccCCccceEEEcCCC-ccEeCccccceeehhcccccccc-ceecccccccccccc
Confidence 5667777888888765522233345667788888888765 55443 45677888888888654 222 2278
Q ss_pred eEEEeeceeccccCCCCC--CCccccceeec----cccc-cccCCCCCcCEEEEe
Q 047314 117 KHVCFNEFREMVVNPPVE--ASLPNLQKLIG----TEMV-CSSGRFSHLQFLKLS 164 (173)
Q Consensus 117 ~~L~l~~n~~~~~~lp~~--~~l~~L~~L~l----~~~~-~~l~~l~~L~~L~l~ 164 (173)
+.+.+..+.+. .++.. .++.+|+.+.+ ..+. .++.++++|+.+.+-
T Consensus 289 ~~i~l~~~~i~--~I~~~aF~~c~~L~~i~lp~~l~~I~~~aF~~C~~L~~i~ip 341 (379)
T 4h09_A 289 TKVVMDNSAIE--TLEPRVFMDCVKLSSVTLPTALKTIQVYAFKNCKALSTISYP 341 (379)
T ss_dssp CEEEECCTTCC--EECTTTTTTCTTCCEEECCTTCCEECTTTTTTCTTCCCCCCC
T ss_pred ccccccccccc--eehhhhhcCCCCCCEEEcCccccEEHHHHhhCCCCCCEEEEC
Confidence 88888777666 55543 77888888887 2332 347778888877663
No 163
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=94.99 E-value=0.21 Score=38.54 Aligned_cols=92 Identities=16% Similarity=0.145 Sum_probs=60.3
Q ss_pred hCCCCCCcEEeccCCcccccCccccCCCCccEEEecCCCCCCCC--------cceEEEeeceeccccCCCCC--CCcccc
Q 047314 71 VGNLIHLRYLDLRKTWLKKLPSSMGNLFNLQSLDLSSTLVDPIP--------LLKHVCFNEFREMVVNPPVE--ASLPNL 140 (173)
Q Consensus 71 ~~~l~~L~~l~l~~~~~~~~p~~l~~l~~L~~L~l~~~~~~~lp--------~L~~L~l~~n~~~~~~lp~~--~~l~~L 140 (173)
+.....|+.+.+..+....-...+..+.+|+.+.+... +..++ +|+.+.+..+ +. .+... .++.+|
T Consensus 261 F~~c~~L~~i~lp~~~~~I~~~aF~~c~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~--~I~~~aF~~C~~L 336 (394)
T 4gt6_A 261 FDSCAYLASVKMPDSVVSIGTGAFMNCPALQDIEFSSR-ITELPESVFAGCISLKSIDIPEG-IT--QILDDAFAGCEQL 336 (394)
T ss_dssp TTTCSSCCEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEECCTT-CC--EECTTTTTTCTTC
T ss_pred eeecccccEEecccccceecCcccccccccccccCCCc-ccccCceeecCCCCcCEEEeCCc-cc--EehHhHhhCCCCC
Confidence 45567777777765533333455677888888887643 33322 7888888653 33 44433 778889
Q ss_pred ceeec----ccc-ccccCCCCCcCEEEEece
Q 047314 141 QKLIG----TEM-VCSSGRFSHLQFLKLSNI 166 (173)
Q Consensus 141 ~~L~l----~~~-~~~l~~l~~L~~L~l~~~ 166 (173)
+.+.+ ..+ ..++.++++|+.+++.+.
T Consensus 337 ~~i~ip~sv~~I~~~aF~~C~~L~~i~~~~~ 367 (394)
T 4gt6_A 337 ERIAIPSSVTKIPESAFSNCTALNNIEYSGS 367 (394)
T ss_dssp CEEEECTTCCBCCGGGGTTCTTCCEEEESSC
T ss_pred CEEEECcccCEEhHhHhhCCCCCCEEEECCc
Confidence 98888 233 335888999999988753
No 164
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=94.88 E-value=0.013 Score=41.46 Aligned_cols=78 Identities=15% Similarity=0.174 Sum_probs=50.8
Q ss_pred cccCCCcccEEEecCc-ccc-----cchhhhCCCCCCcEEeccCCccc-c----cCccccCCCCccEEEecCCCCCCCC-
Q 047314 47 LAKECRLLQVLDLEGV-YMA-----LLDSSVGNLIHLRYLDLRKTWLK-K----LPSSMGNLFNLQSLDLSSTLVDPIP- 114 (173)
Q Consensus 47 ~~~~l~~L~~L~l~~n-~l~-----~~~~~~~~l~~L~~l~l~~~~~~-~----~p~~l~~l~~L~~L~l~~~~~~~lp- 114 (173)
....-+.|+.|+++++ .+. .+.+.+..-+.|+.|++++|.+. . +...+..-..|+.|++++|.|+.-.
T Consensus 36 ll~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga 115 (197)
T 1pgv_A 36 LREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELL 115 (197)
T ss_dssp HHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHH
T ss_pred HHhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHH
Confidence 3445567888888875 554 24455556677888888888777 2 2233444567888888888776422
Q ss_pred -----------cceEEEeece
Q 047314 115 -----------LLKHVCFNEF 124 (173)
Q Consensus 115 -----------~L~~L~l~~n 124 (173)
.|+.|++++|
T Consensus 116 ~ala~aL~~N~tL~~L~L~n~ 136 (197)
T 1pgv_A 116 ARLLRSTLVTQSIVEFKADNQ 136 (197)
T ss_dssp HHHHHHTTTTCCCSEEECCCC
T ss_pred HHHHHHHhhCCceeEEECCCC
Confidence 6777777654
No 165
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=94.46 E-value=0.049 Score=38.46 Aligned_cols=81 Identities=14% Similarity=0.075 Sum_probs=56.7
Q ss_pred ccccCCCcccEEEecCcccc-c----chhhhCCCCCCcEEeccCCccc-----ccCccccCCCCccEEEecCCCCCCCC-
Q 047314 46 FLAKECRLLQVLDLEGVYMA-L----LDSSVGNLIHLRYLDLRKTWLK-----KLPSSMGNLFNLQSLDLSSTLVDPIP- 114 (173)
Q Consensus 46 ~~~~~l~~L~~L~l~~n~l~-~----~~~~~~~l~~L~~l~l~~~~~~-----~~p~~l~~l~~L~~L~l~~~~~~~lp- 114 (173)
..+..-..|+.|++++|.+. . +...+..-+.|+.|++++|.++ .+...+..-..|+.|+++++....+.
T Consensus 64 ~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~ 143 (197)
T 1pgv_A 64 EAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGN 143 (197)
T ss_dssp HHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCH
T ss_pred HHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHHHHHhhCCceeEEECCCCcCcCcCH
Confidence 45666789999999999988 3 2333444578999999999988 23345555667999999865332222
Q ss_pred --------------cceEEEeeceec
Q 047314 115 --------------LLKHVCFNEFRE 126 (173)
Q Consensus 115 --------------~L~~L~l~~n~~ 126 (173)
+|..|++..|.+
T Consensus 144 ~g~~~ia~aL~~N~tL~~L~l~~~~~ 169 (197)
T 1pgv_A 144 QVEMDMMMAIEENESLLRVGISFASM 169 (197)
T ss_dssp HHHHHHHHHHHHCSSCCEEECCCCCH
T ss_pred HHHHHHHHHHHhCCCcCeEeccCCCc
Confidence 677777776543
No 166
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=82.99 E-value=0.5 Score=41.60 Aligned_cols=32 Identities=19% Similarity=0.273 Sum_probs=26.4
Q ss_pred CcccccCCccc--c---ceeEeCHHHHHHHHHhcccc
Q 047314 1 MELIERSMVQP--I---KTIQVHDLLRELAISKAKED 32 (173)
Q Consensus 1 ~~l~~r~l~~~--~---~~~~~h~~~~~~~~~~~~~~ 32 (173)
++|++|||++. . ..|+||+++++++...+.++
T Consensus 416 ~~L~~~sl~~~~~~~~~~~~~~h~l~~~~~~~~~~~~ 452 (1249)
T 3sfz_A 416 QEFVNKSLLFCNRNGKSFCYYLHDLQVDFLTEKNRSQ 452 (1249)
T ss_dssp HHHHHTTSCEEEESSSSEEEECCHHHHHHHHHHTGGG
T ss_pred HHHHhccceEEecCCCceEEEecHHHHHHHHhhhhHH
Confidence 37899999988 2 35999999999999886554
No 167
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=63.10 E-value=2.8 Score=33.99 Aligned_cols=27 Identities=22% Similarity=0.309 Sum_probs=23.2
Q ss_pred cccccCCccc-----cceeEeCHHHHHHHHHh
Q 047314 2 ELIERSMVQP-----IKTIQVHDLLRELAISK 28 (173)
Q Consensus 2 ~l~~r~l~~~-----~~~~~~h~~~~~~~~~~ 28 (173)
+|+++|||+. ...|.||+++++++...
T Consensus 417 ~L~~~~Ll~~~~~~~~~~~~~H~lv~~~~~~~ 448 (591)
T 1z6t_A 417 EFVNKSLLFCDRNGKSFRYYLHDLQVDFLTEK 448 (591)
T ss_dssp HHHHTTSSEEEEETTEEEEECCHHHHHHHHHH
T ss_pred HHHhCcCeEEecCCCccEEEEcHHHHHHHHhh
Confidence 6899999986 24799999999999877
No 168
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=50.43 E-value=4.8 Score=35.86 Aligned_cols=26 Identities=27% Similarity=0.350 Sum_probs=21.7
Q ss_pred CcccccCCccc---cceeEeCHHHHHHHH
Q 047314 1 MELIERSMVQP---IKTIQVHDLLRELAI 26 (173)
Q Consensus 1 ~~l~~r~l~~~---~~~~~~h~~~~~~~~ 26 (173)
++|++||||+. ..+|+|||++++++.
T Consensus 409 ~eLvdRSLLq~d~~~~rYrMHDLllELr~ 437 (1221)
T 1vt4_I 409 NKLHKYSLVEKQPKESTISIPSIYLELKV 437 (1221)
T ss_dssp HHHHTSSSSSBCSSSSEEBCCCHHHHHHH
T ss_pred HHHHhhCCEEEeCCCCEEEehHHHHHHhc
Confidence 37999999997 468999999988653
No 169
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=38.11 E-value=45 Score=20.19 Aligned_cols=35 Identities=14% Similarity=0.173 Sum_probs=14.5
Q ss_pred hCCCCCCcEEeccCCccccc-CccccCCCCccEEEec
Q 047314 71 VGNLIHLRYLDLRKTWLKKL-PSSMGNLFNLQSLDLS 106 (173)
Q Consensus 71 ~~~l~~L~~l~l~~~~~~~~-p~~l~~l~~L~~L~l~ 106 (173)
|.++.+|+.+.+..+ ++.+ ...|..|.+|+.+.+.
T Consensus 16 F~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~ 51 (100)
T 2lz0_A 16 FAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILT 51 (100)
T ss_dssp TTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEEC
T ss_pred hcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEc
Confidence 334444444444433 2222 2234444445444443
Done!