BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 047315
(417 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1BHE|A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora
Length = 376
Score = 82.8 bits (203), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 73/247 (29%), Positives = 114/247 (46%), Gaps = 30/247 (12%)
Query: 168 PTNVKFVAMKKTIVRRITSVNSKSFHIALVECKNFRGSKIKISAPANSPNTDGIHIEXXX 227
P ++ K + ++ +NS +FH+ + F K I P+ + NTDGI
Sbjct: 151 PRLIQINKSKNFTLYNVSLINSPNFHVVFSDGDGFTAWKTTIKTPSTARNTDGIDPMSSK 210
Query: 228 XXXXXXXXIGTGDDCISVG--QGNSE---VTIASITCGPGHGISVGS--LGRYPNEGDVR 280
I TGDD +++ +G +E ++I G GHG+S+GS +G Y
Sbjct: 211 NITIAYSNIATGDDNVAIKAYKGRAETRNISILHNDFGTGHGMSIGSETMGVY------- 263
Query: 281 GLVVRDSTMTGTMNGVRIKTWANSPGSSAATNMTFENIIMNNVSNPIIIDQAYCPFTSCP 340
+ V D M GT NG+RIK+ ++ G + + N++M NV+ PI+ID Y
Sbjct: 264 NVTVDDLKMNGTTNGLRIKSDKSAAG--VVNGVRYSNVVMKNVAKPIVIDTVY------E 315
Query: 341 TKPPSRV-KLSDIYFKNIRGTSSSAVAVALECSKGIPCQNIYLENVHLDLSSGEKQPTSS 399
K S V SDI FK++ + V + E +K P + + ++NV L S T
Sbjct: 316 KKEGSNVPDWSDITFKDVTSETKGVVVLNGENAKK-PIE-VTMKNVKLTSDS-----TWQ 368
Query: 400 CKNVEAK 406
KNV K
Sbjct: 369 IKNVNVK 375
>pdb|1NHC|A Chain A, Structural Insights Into The Processivity Of
Endopolygalacturonase I From Aspergillus Niger
pdb|1NHC|B Chain B, Structural Insights Into The Processivity Of
Endopolygalacturonase I From Aspergillus Niger
pdb|1NHC|C Chain C, Structural Insights Into The Processivity Of
Endopolygalacturonase I From Aspergillus Niger
pdb|1NHC|D Chain D, Structural Insights Into The Processivity Of
Endopolygalacturonase I From Aspergillus Niger
pdb|1NHC|E Chain E, Structural Insights Into The Processivity Of
Endopolygalacturonase I From Aspergillus Niger
pdb|1NHC|F Chain F, Structural Insights Into The Processivity Of
Endopolygalacturonase I From Aspergillus Niger
Length = 336
Score = 75.5 bits (184), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 69/235 (29%), Positives = 111/235 (47%), Gaps = 21/235 (8%)
Query: 172 KFVAMKKTIVRRITSVNSKSFHIALVECKNFRGSKIKISAPANSPNTDGIHIEXXXXXXX 231
K + +K T V+ I SV + + H+ N G NTDG I
Sbjct: 114 KGINIKNTPVQAI-SVQATNVHLNDFTIDNSDGDD------NGGHNTDGFDISESTGVYI 166
Query: 232 XXXXIGTGDDCISVGQGNSEVTIASITCGPGHGISVGSLGRYPNEGDVRGLVVRDSTMTG 291
+ DDCI++ G S ++ TC GHG+S+GS+G ++ V+ + + DST++
Sbjct: 167 SGATVKNQDDCIAINSGES-ISFTGGTCSGGHGLSIGSVGGR-DDNTVKNVTISDSTVSN 224
Query: 292 TMNGVRIKTWANSPGSSAATNMTFENIIMNNVSN-PIIIDQAYCPFTSCPTKPPSR-VKL 349
+ NGVRIKT G + +T+ NI ++ +++ I+I+Q Y PT PS + +
Sbjct: 225 SANGVRIKTIYKETGD--VSEITYSNIQLSGITDYGIVIEQDY--ENGSPTGTPSTGIPI 280
Query: 350 SDIYFKNIRGT-SSSAVAVALECSKGIPCQNIYLENVHLDLSSGEKQPTSSCKNV 403
+D+ + GT A V + C G C + V DLS G + + C+NV
Sbjct: 281 TDVTVDGVTGTLEDDATQVYILCGDG-SCSDWTWSGV--DLSGG--KTSDKCENV 330
>pdb|1CZF|A Chain A, Endo-Polygalacturonase Ii From Aspergillus Niger
pdb|1CZF|B Chain B, Endo-Polygalacturonase Ii From Aspergillus Niger
Length = 362
Score = 68.9 bits (167), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 54/166 (32%), Positives = 93/166 (56%), Gaps = 14/166 (8%)
Query: 240 DDCISVGQGNSEVTIASITCGPGHGISVGSLGRYPNEGDVRGLVVRDSTMTGTMNGVRIK 299
DDC++V G + + TC GHG+S+GS+G N V+ + + ST++ + N VRIK
Sbjct: 201 DDCLAVNSGEN-IWFTGGTCIGGHGLSIGSVGDRSNN-VVKNVTIEHSTVSNSENAVRIK 258
Query: 300 TWANSPGSSAATNMTFENIIMNNVSN-PIIIDQAYCPFTSCPT-KPPSRVKLSDIYFKNI 357
T + + GS + +T+ NI+M+ +S+ ++I Q Y PT KP + V + D+ +++
Sbjct: 259 TISGATGS--VSEITYSNIVMSGISDYGVVIQQDYED--GKPTGKPTNGVTIQDVKLESV 314
Query: 358 RGT-SSSAVAVALECSKGIPCQNIYLENVHLDLSSGEKQPTSSCKN 402
G+ S A + L C G C + ++V + +G K+ T +CKN
Sbjct: 315 TGSVDSGATEIYLLCGSG-SCSDWTWDDVKV---TGGKKST-ACKN 355
>pdb|1HG8|A Chain A, Endopolygalacturonase From The Phytopathogenic Fungus
Fusarium Moniliforme
Length = 349
Score = 67.8 bits (164), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 55/168 (32%), Positives = 88/168 (52%), Gaps = 10/168 (5%)
Query: 210 SAPANSPNTDGIHIEXXXXXXXXXXXIGTGDDCISVGQGNSEVTIASITCGPGHGISVGS 269
S PA + NTDG I + DDC++V G + + ++++ C GHG+S+GS
Sbjct: 159 SLPA-AHNTDGFDISSSDHVTLDNNHVYNQDDCVAVTSG-TNIVVSNMYCSGGHGLSIGS 216
Query: 270 LGRYPNEGDVRGLVVRDSTMTGTMNGVRIKTWANSPGSSAATNMTFENIIMNNVSN-PII 328
+G ++ V G+ S + + NG RIK +NS + N+T++NI + N+S +
Sbjct: 217 VGG-KSDNVVDGVQFLSSQVVNSQNGCRIK--SNSGATGTINNVTYQNIALTNISTYGVD 273
Query: 329 IDQAYCPFTSCPT-KPPSRVKLSDIYFKNIRGT-SSSAVAVALECSKG 374
+ Q Y PT KP + VK+S+I F + GT +SSA + C G
Sbjct: 274 VQQDY--LNGGPTGKPTNGVKISNIKFIKVTGTVASSAQDWFILCGDG 319
>pdb|1IA5|A Chain A, Polygalacturonase From Aspergillus Aculeatus
pdb|1IB4|A Chain A, Crystal Structure Of Polygalacturonase From Aspergillus
Aculeatus At Ph4.5
pdb|1IB4|B Chain B, Crystal Structure Of Polygalacturonase From Aspergillus
Aculeatus At Ph4.5
Length = 339
Score = 64.3 bits (155), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 57/190 (30%), Positives = 95/190 (50%), Gaps = 16/190 (8%)
Query: 217 NTDGIHIEXXXXXXXXXXXIGTGDDCISVGQGNSEVTIASITCGPGHGISVGSLG-RYPN 275
NTD I + DDC++V G + + C GHG+S+GS+G R N
Sbjct: 157 NTDAFDIGTSTYVTISGATVYNQDDCVAVNSGE-NIYFSGGYCSGGHGLSIGSVGGRSDN 215
Query: 276 EGDVRGLVVRDSTMTGTMNGVRIKTWANSPGSSAATNMTFENIIMNNVSN-PIIIDQAYC 334
V+ + DST+ + NGVRIKT ++ GS +++T+++I + +++ I++ Q Y
Sbjct: 216 T--VKNVTFVDSTIINSDNGVRIKTNIDTTGS--VSDVTYKDITLTSIAKYGIVVQQNYG 271
Query: 335 PFTSCPTKPPSRVKLSDIYFKNIRGT-SSSAVAVALECSKGIPCQNIYLENVHLDLSSGE 393
+S PT + V ++D N+ G+ SS + + C G C + +V + SG
Sbjct: 272 DTSSTPT---TGVPITDFVLDNVHGSVVSSGTNILISCGSG-SCSDWTWTDVSV---SGG 324
Query: 394 KQPTSSCKNV 403
K +S C NV
Sbjct: 325 KT-SSKCTNV 333
>pdb|1RMG|A Chain A, Rhamnogalacturonase A From Aspergillus Aculeatus
Length = 422
Score = 64.3 bits (155), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 81/359 (22%), Positives = 143/359 (39%), Gaps = 44/359 (12%)
Query: 47 NVKDFGARADGRTDDSKAFEAAWKEACETTGAVTLLVPHGTY-------LIGPIKFAGPC 99
N+ +GA AD TD A +AW AC++ G V +P G Y L G A
Sbjct: 22 NILSYGAVADNSTDVGPAITSAWA-ACKSGGLV--YIPSGNYALNTWVTLTGGSATAIQL 78
Query: 100 KNVSNITVQMKGYLIASTNLSEYRFGAGWVXXXXXXXXXXXXXXXXXXXXAKAWPYNGCP 159
+ T G +IA T+ +++ + Y+
Sbjct: 79 DGIIYRTGTASGNMIAVTDTTDFEL---------------FSSTSKGAVQGFGYVYHAEG 123
Query: 160 THFNCKLLPTNVKFVAMKKTIVRRITSVNSKSFHIALVECKNFRGSKIKISAPANSPNTD 219
T+ L T+V ++ I+ V++ +FH + C + + I N D
Sbjct: 124 TYGARILRLTDVTHFSVHDIIL-----VDAPAFHFTMDTCSDGEVYNMAIRG-GNEGGLD 177
Query: 220 GIHIEXXXXXXXXXXXIGTGDDCISVGQGNSEVTIASITCGPGHGISVGSLGRYPNEGDV 279
GI + + D+C++V + + + SI C G ++GSLG + DV
Sbjct: 178 GIDV-WGSNIWVHDVEVTNKDECVTVKSPANNILVESIYCNWSGGCAMGSLGA---DTDV 233
Query: 280 RGLVVRDSTMTGTMNGVRIKTWANSPGSSAATNMTFENIIMNNVSNPIIIDQAYCPFTSC 339
+V R+ + IK+ + GS +N+ EN I + + + ID + T+
Sbjct: 234 TDIVYRNVYTWSSNQMYMIKS---NGGSGTVSNVLLENFIGHGNAYSLDIDGYWSSMTAV 290
Query: 340 PTKPPSRVKLSDIYFKNIRGTSSSAVA---VALECSKGIPCQNIYLENVHLDLSSGEKQ 395
V+L++I KN +GT ++ + + CS PC ++ LE++ + SG +
Sbjct: 291 AGD---GVQLNNITVKNWKGTEANGATRPPIRVVCSDTAPCTDLTLEDIAIWTESGSSE 346
>pdb|2IQ7|A Chain A, Crystal Structure Of The Polygalacturonase From
Colletotrichum Lupini And Its Implications For The
Interaction With Polygalacturonase- Inhibiting Proteins
pdb|2IQ7|B Chain B, Crystal Structure Of The Polygalacturonase From
Colletotrichum Lupini And Its Implications For The
Interaction With Polygalacturonase- Inhibiting Proteins
pdb|2IQ7|C Chain C, Crystal Structure Of The Polygalacturonase From
Colletotrichum Lupini And Its Implications For The
Interaction With Polygalacturonase- Inhibiting Proteins
pdb|2IQ7|D Chain D, Crystal Structure Of The Polygalacturonase From
Colletotrichum Lupini And Its Implications For The
Interaction With Polygalacturonase- Inhibiting Proteins
pdb|2IQ7|E Chain E, Crystal Structure Of The Polygalacturonase From
Colletotrichum Lupini And Its Implications For The
Interaction With Polygalacturonase- Inhibiting Proteins
pdb|2IQ7|F Chain F, Crystal Structure Of The Polygalacturonase From
Colletotrichum Lupini And Its Implications For The
Interaction With Polygalacturonase- Inhibiting Proteins
pdb|2IQ7|G Chain G, Crystal Structure Of The Polygalacturonase From
Colletotrichum Lupini And Its Implications For The
Interaction With Polygalacturonase- Inhibiting Proteins
Length = 339
Score = 63.2 bits (152), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 55/194 (28%), Positives = 95/194 (48%), Gaps = 14/194 (7%)
Query: 213 ANSPNTDGIHIEXXXXXXXXXXXIGTGDDCISVGQGNSEVTIASITCGPGHGISVGSLGR 272
A NTD + + DDC+++ G + +T TC GHG+S+GS+G
Sbjct: 149 AGGHNTDAFDVGSSTGVYISGANVKNQDDCLAINSG-TNITFTGGTCSGGHGLSIGSVGG 207
Query: 273 YPNEGDVRGLVVRDSTMTGTMNGVRIKTWANSPGSSAATNMTFENIIMNNVSN-PIIIDQ 331
+ V+ + + +S + + NGVRIKT + + GS + +T+ I ++N++ I+I+Q
Sbjct: 208 RSDN-TVKTVTISNSKIVNSDNGVRIKTVSGATGS--VSGVTYSGITLSNIAKYGIVIEQ 264
Query: 332 AYCPFTSCPTKPPSR-VKLSDIYFKNIRGT-SSSAVAVALECSKGIPCQNIYLENVHLDL 389
Y PT P+ V ++ + I G+ +SS V + C+ G C N V +
Sbjct: 265 DY--ENGSPTGTPTNGVPITGLTLSKITGSVASSGTNVYILCASG-ACSNWKWSGVSV-- 319
Query: 390 SSGEKQPTSSCKNV 403
+G K+ T C N+
Sbjct: 320 -TGGKKST-KCSNI 331
>pdb|3JUR|A Chain A, The Crystal Structure Of A Hyperthermoactive
Exopolygalacturonase From Thermotoga Maritima
pdb|3JUR|B Chain B, The Crystal Structure Of A Hyperthermoactive
Exopolygalacturonase From Thermotoga Maritima
pdb|3JUR|C Chain C, The Crystal Structure Of A Hyperthermoactive
Exopolygalacturonase From Thermotoga Maritima
pdb|3JUR|D Chain D, The Crystal Structure Of A Hyperthermoactive
Exopolygalacturonase From Thermotoga Maritima
Length = 448
Score = 62.8 bits (151), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 83/342 (24%), Positives = 119/342 (34%), Gaps = 72/342 (21%)
Query: 46 VNVKDFGARADGRTDDSKAFEAAWKEACETTGAVTLLVPHGTYLIGPIKFAGPCKNVSNI 105
VN+ DFGAR DGRTD S++F+ A +E + G L+VP G +L GPI SNI
Sbjct: 28 VNLLDFGARGDGRTDCSESFKRAIEELSKQGGG-RLIVPEGVFLTGPIHLK------SNI 80
Query: 106 TVQMKGYLIASTNLSEY------RFGA---------GWVXXXXXXXXXXXXXXXXXXXXA 150
+ +KG + + Y RF +
Sbjct: 81 ELHVKGTIKFIPDPERYLPVVLTRFEGIELYNYSPLVYALDCENVAITGSGVLDGSADNE 140
Query: 151 KAWPYNGCPTHFNCKLLPTNVKFVAMKKTIVRRITSVNSKSF---------HIALVECKN 201
WP+ G + LP + V K + R T V + F + C+N
Sbjct: 141 HWWPWKGKKDFGWKEGLPNQQEDVKKLKEMAERGTPVEERVFGKGHYLRPSFVQFYRCRN 200
Query: 202 --FRGSKI-------------------KISAPANSPNTDGIHIEXXXXXXXXXXXIGTGD 240
G KI I + PN DGI E TGD
Sbjct: 201 VLVEGVKIINSPMWCIHPVLSENVIIRNIEISSTGPNNDGIDPESCKYMLIEKCRFDTGD 260
Query: 241 DCISVGQGN----------SEVTIAS----ITCGPGHGISVGSLGRYPNEGDVRGLVVRD 286
D + + G SE + I+ G+ +GS G VR +V R+
Sbjct: 261 DSVVIKSGRDADGRRIGVPSEYILVRDNLVISQASHGGLVIGS----EMSGGVRNVVARN 316
Query: 287 STMTGTMNGVRIKTWANSPGSSAATNMTFENIIMNNVSNPII 328
+ +R+KT NS N+ F + + NVS +I
Sbjct: 317 NVYMNVERALRLKT--NSRRGGYMENIFFIDNVAVNVSEEVI 356
>pdb|1K5C|A Chain A, Endopolygalacturonase I From Stereum Purpureum At 0.96 A
Resolution
pdb|1KCC|A Chain A, Endopolygalacturonase I From Stereum Purpureum Complexed
With A Galacturonate At 1.00 A Resolution.
pdb|1KCD|A Chain A, Endopolygalacturonase I From Stereum Purpureum Complexed
With Two Galacturonate At 1.15 A Resolution
Length = 335
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 41/138 (29%), Positives = 72/138 (52%), Gaps = 16/138 (11%)
Query: 240 DDCISVGQGNSEVTIASITCGPGHGISVGSL--GRYPNEGDVRGLVVRDSTMTGTMNGVR 297
DDCI++ GN+ + + C GHGIS+GS+ G++ V +V++ +T+T +M GVR
Sbjct: 173 DDCIAINDGNN-IRFENNQCSGGHGISIGSIATGKH-----VSNVVIKGNTVTRSMYGVR 226
Query: 298 IKTWANSPGSSAATNMTFE-NIIMNNVSNPIIIDQAYCPFTSCPTKPPSRVKLSDIYFKN 356
IK + S++ + +T++ N I ++I Q+Y P + SD+ F
Sbjct: 227 IKAQRTAT-SASVSGVTYDANTISGIAKYGVLISQSYPDDVG---NPGTGAPFSDVNFTG 282
Query: 357 IRGT---SSSAVAVALEC 371
T +++A V +EC
Sbjct: 283 GATTIKVNNAATRVTVEC 300
>pdb|3GQ7|A Chain A, Crystal Structure Of The Bacteriophage Phi29 Gene
Product 12 N- Terminal Fragment
pdb|3GQ8|A Chain A, Crystal Structure Of The Bacteriophage Phi29 Gene
Product 12 N- Terminal Fragment In Complex With
2-(N-Cyclohexylamino)ethane Sulfonic Acid (Ches)
pdb|3GQ9|A Chain A, Crystal Structure Of The Bacteriophage Phi29 Gene
Product 12 N- Terminal Fragment In An Apo Form
pdb|3GQA|A Chain A, Crystal Structure Of The Bacteriophage Phi29 Gene
Product 12 N- Terminal Fragment In Complex With Cobalt
Ions
Length = 609
Score = 38.5 bits (88), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 29/52 (55%), Gaps = 6/52 (11%)
Query: 39 KETSSLLVNVKDFGARADGRTDDSKAFEAAWKEACETTGAVTLLVPHGTYLI 90
E V+VK +GA+ DG TDD +AFE A + + VP+GT+++
Sbjct: 16 DELKQFGVSVKTYGAKGDGVTDDIRAFEKAIES------GFPVYVPYGTFMV 61
>pdb|3SUC|A Chain A, Crystal Structure Of The Pre-Mature Bacteriophage Phi29
Gene Product 12
Length = 772
Score = 38.1 bits (87), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 29/51 (56%), Gaps = 6/51 (11%)
Query: 40 ETSSLLVNVKDFGARADGRTDDSKAFEAAWKEACETTGAVTLLVPHGTYLI 90
E V+VK +GA+ DG TDD +AFE A + + VP+GT+++
Sbjct: 17 ELKQFGVSVKTYGAKGDGVTDDIRAFEKAIES------GFPVYVPYGTFMV 61
>pdb|3EQN|A Chain A, Crystal Structure Of Beta-1,3-Glucanase From Phanerochaete
Chrysosporium (Lam55a)
pdb|3EQN|B Chain B, Crystal Structure Of Beta-1,3-Glucanase From Phanerochaete
Chrysosporium (Lam55a)
pdb|3EQO|A Chain A, Crystal Structure Of Beta-1,3-Glucanase From Phanerochaete
Chrysosporium (Lam55a) Gluconolactone Complex
pdb|3EQO|B Chain B, Crystal Structure Of Beta-1,3-Glucanase From Phanerochaete
Chrysosporium (Lam55a) Gluconolactone Complex
Length = 758
Score = 37.0 bits (84), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 21/55 (38%), Positives = 31/55 (56%), Gaps = 8/55 (14%)
Query: 44 LLVNVKDFGARADGRTDDSKAFEAAWK------EACETTGAVTLLV--PHGTYLI 90
+ NVK++GA+ DG TDD+ A +AA + C++T LV P GTY +
Sbjct: 48 VFRNVKNYGAKGDGNTDDTAAIQAAINAGGRCGQGCDSTTTQPALVYFPPGTYKV 102
Score = 29.3 bits (64), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 26/48 (54%), Gaps = 3/48 (6%)
Query: 43 SLLVNVKDFGARADGRTDDSKAFEAAWKEACETTGAVTLLVPHGTYLI 90
S V+V+ GA+ DG TDD++A + + + G + GTY++
Sbjct: 398 SDFVSVRSQGAKGDGHTDDTQAIKNVFAKYA---GCKIIFFDAGTYIV 442
>pdb|2UVE|A Chain A, Structure Of Yersinia Enterocolitica Family 28
Exopolygalacturonase
pdb|2UVE|B Chain B, Structure Of Yersinia Enterocolitica Family 28
Exopolygalacturonase
pdb|2UVF|A Chain A, Structure Of Yersinia Enterocolitica Family 28
Exopolygalacturonase In Complex With Digalaturonic Acid
pdb|2UVF|B Chain B, Structure Of Yersinia Enterocolitica Family 28
Exopolygalacturonase In Complex With Digalaturonic Acid
Length = 608
Score = 36.6 bits (83), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 43/81 (53%), Gaps = 7/81 (8%)
Query: 45 LVNVKDFGARADGRTDDSKAFEAAWKEACETTGAVTLLVPHGTYLIGPIKFAGPCKNVSN 104
+VNV+DFGA DG+T ++KA + A ++C+ V +P GTY G + K+
Sbjct: 156 IVNVRDFGAIDDGKTLNTKAIQQAI-DSCKPGCRVE--IPAGTYKSGALWL----KSDMT 208
Query: 105 ITVQMKGYLIASTNLSEYRFG 125
+ +Q L+ S N +Y G
Sbjct: 209 LNLQAGAILLGSENPDDYPAG 229
Score = 32.0 bits (71), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 50/219 (22%), Positives = 90/219 (41%), Gaps = 25/219 (11%)
Query: 186 SVNSKSFH-IALVECKNFRGSKIKISAPANSPNTDGIHIEXXXXXXXXXXXIGTGDDCIS 244
+V + +FH I +E N + + I ++ N DGI TGDDCI+
Sbjct: 348 TVRNPAFHGIMNLENHNVVANGL-IHQTYDANNGDGIEFGNSQNVMVFNNFFDTGDDCIN 406
Query: 245 VGQGNSE----------VTIASITCGPGHG-ISVGS-LGRYPNEGDVRGLVVRDSTMTGT 292
G E + + GHG I GS G + + ++ ++ M T
Sbjct: 407 FAAGTGEKAQEQEPMKGAWLFNNYFRMGHGAIVTGSHTGAW-----IEDILAENNVMYLT 461
Query: 293 MNGVRIKTWANSPGSSAATNMTFENIIMNNVSNPI-IIDQAYCPFTSCPTKPPSRV--KL 349
G+R K+ + G A N+TF N M +++ + ++ Y + PP+++ +
Sbjct: 462 DIGLRAKSTSTIGG--GARNVTFRNNAMRDLAKQVMVMTLDYADSNANIDYPPAKIPAQF 519
Query: 350 SDIYFKNIRGTSSSAVAVALECSKGIPCQNIYLENVHLD 388
D KN+ +S+ ++E KG + VH++
Sbjct: 520 YDFTLKNVTVDNSTGKNPSIEI-KGDTANKAWHRLVHVN 557
>pdb|1H80|A Chain A, 1,3-Alpha-1,4-Beta-D-Galactose-4-Sulfate-3,6-Anhydro-D-
Galactose-2-Sulfate 4 Galactohydrolase
pdb|1H80|B Chain B, 1,3-Alpha-1,4-Beta-D-Galactose-4-Sulfate-3,6-Anhydro-D-
Galactose-2-Sulfate 4 Galactohydrolase
pdb|1KTW|A Chain A, Iota-carrageenase Complexed To Iota-carrageenan
Fragments
pdb|1KTW|B Chain B, Iota-carrageenase Complexed To Iota-carrageenan
Fragments
Length = 464
Score = 35.4 bits (80), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 22/41 (53%)
Query: 48 VKDFGARADGRTDDSKAFEAAWKEACETTGAVTLLVPHGTY 88
V DFGA + +DDS A + A TLL+P+GTY
Sbjct: 25 VDDFGANGNDTSDDSNALQRAINAISRKPNGGTLLIPNGTY 65
>pdb|3LMW|A Chain A, Crystal Structure Of Iota-Carrageenase Family Gh82 From
A. Fortis In Absence Of Chloride Ions
pdb|3LMW|B Chain B, Crystal Structure Of Iota-Carrageenase Family Gh82 From
A. Fortis In Absence Of Chloride Ions
Length = 473
Score = 35.4 bits (80), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 22/41 (53%)
Query: 48 VKDFGARADGRTDDSKAFEAAWKEACETTGAVTLLVPHGTY 88
V DFGA + +DDS A + A TLL+P+GTY
Sbjct: 26 VDDFGANGNDTSDDSNALQRAINAISRKPNGGTLLIPNGTY 66
>pdb|3IYP|C Chain C, The Interaction Of Decay-Accelerating Factor With
Echovirus 7
pdb|2X5I|B Chain B, Crystal Structure Echovirus 7
Length = 260
Score = 31.2 bits (69), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 18/28 (64%)
Query: 249 NSEVTIASITCGPGHGISVGSLGRYPNE 276
N E T+ SI C G G+ VG+L YP++
Sbjct: 160 NGEHTVQSIVCNAGMGVGVGNLTIYPHQ 187
>pdb|1M11|2 Chain 2, Structural Model Of Human Decay-accelerating Factor Bound
To Echovirus 7 From Cryo-electron Microscopy
Length = 254
Score = 29.3 bits (64), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 17/26 (65%)
Query: 251 EVTIASITCGPGHGISVGSLGRYPNE 276
E T+ SI C G G+ VG+L YP++
Sbjct: 156 EHTVQSIVCNAGMGVGVGNLTIYPHQ 181
>pdb|2PYG|A Chain A, Azotobacter Vinelandii Mannuronan C-5 Epimerase Alge4
A-Module
pdb|2PYG|B Chain B, Azotobacter Vinelandii Mannuronan C-5 Epimerase Alge4
A-Module
pdb|2PYH|A Chain A, Azotobacter Vinelandii Mannuronan C-5 Epimerase Alge4
A-Module Complexed With Mannuronan Trisaccharide
pdb|2PYH|B Chain B, Azotobacter Vinelandii Mannuronan C-5 Epimerase Alge4
A-Module Complexed With Mannuronan Trisaccharide
Length = 377
Score = 28.9 bits (63), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
Query: 47 NVKDFGARADGRTDDSKAFEAAWKEACETTGAVTLLVPHGTYLI 90
NVKDFGA DG +DD + +AA A T+ +P G Y +
Sbjct: 4 NVKDFGALGDGVSDDRASIQAAIDAAYAAG-GGTVYLPAGEYRV 46
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.133 0.403
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,598,951
Number of Sequences: 62578
Number of extensions: 436146
Number of successful extensions: 772
Number of sequences better than 100.0: 18
Number of HSP's better than 100.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 732
Number of HSP's gapped (non-prelim): 24
length of query: 417
length of database: 14,973,337
effective HSP length: 101
effective length of query: 316
effective length of database: 8,652,959
effective search space: 2734335044
effective search space used: 2734335044
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (25.0 bits)