Query 047315
Match_columns 417
No_of_seqs 203 out of 1810
Neff 8.7
Searched_HMMs 46136
Date Fri Mar 29 09:55:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047315.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/047315hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02155 polygalacturonase 100.0 2.3E-76 5E-81 576.8 47.7 366 44-417 26-392 (394)
2 PLN02793 Probable polygalactur 100.0 6.4E-76 1.4E-80 582.6 49.8 369 43-417 50-423 (443)
3 PLN02188 polygalacturonase/gly 100.0 3.9E-76 8.4E-81 577.7 44.8 371 42-417 33-404 (404)
4 PLN02218 polygalacturonase ADP 100.0 8.7E-75 1.9E-79 571.8 47.5 365 41-417 63-431 (431)
5 PLN03010 polygalacturonase 100.0 7.4E-73 1.6E-77 553.0 46.7 354 44-417 45-403 (409)
6 PLN03003 Probable polygalactur 100.0 1.2E-73 2.5E-78 561.4 40.6 360 44-417 22-389 (456)
7 PF00295 Glyco_hydro_28: Glyco 100.0 1.5E-56 3.2E-61 433.4 33.0 323 73-406 1-323 (326)
8 COG5434 PGU1 Endopygalactoruna 100.0 1.4E-41 3E-46 338.7 28.0 277 40-330 77-405 (542)
9 TIGR03808 RR_plus_rpt_1 twin-a 100.0 9.3E-27 2E-31 225.2 23.5 250 39-322 31-337 (455)
10 PF12708 Pectate_lyase_3: Pect 99.9 3.1E-22 6.6E-27 184.2 19.9 213 45-296 1-224 (225)
11 PLN02793 Probable polygalactur 99.9 8E-21 1.7E-25 189.2 29.8 220 103-362 143-397 (443)
12 PLN02188 polygalacturonase/gly 99.9 2.3E-20 5E-25 183.9 28.6 221 103-362 122-377 (404)
13 PLN02218 polygalacturonase ADP 99.9 3.3E-20 7.1E-25 184.0 28.2 219 103-361 156-410 (431)
14 PLN03003 Probable polygalactur 99.9 4.2E-20 9E-25 182.7 27.5 220 103-362 113-360 (456)
15 PLN02155 polygalacturonase 99.9 1.1E-19 2.5E-24 178.2 28.5 221 103-363 115-367 (394)
16 PF00295 Glyco_hydro_28: Glyco 99.9 7.7E-20 1.7E-24 177.3 25.6 218 103-361 60-310 (326)
17 PLN03010 polygalacturonase 99.9 8.1E-19 1.8E-23 172.6 28.6 216 103-362 139-377 (409)
18 PF03718 Glyco_hydro_49: Glyco 99.8 2.3E-17 5E-22 161.5 27.9 271 79-391 233-555 (582)
19 TIGR03805 beta_helix_1 paralle 99.7 3.6E-16 7.8E-21 150.4 20.9 196 65-322 1-202 (314)
20 COG5434 PGU1 Endopygalactoruna 99.4 1.3E-11 2.9E-16 124.3 16.2 154 190-362 237-398 (542)
21 TIGR03805 beta_helix_1 paralle 99.1 5E-08 1.1E-12 94.1 23.2 171 134-331 62-251 (314)
22 PF12541 DUF3737: Protein of u 98.9 3.8E-08 8.3E-13 89.2 13.1 123 173-325 94-227 (277)
23 COG3420 NosD Nitrous oxidase a 98.8 1E-06 2.2E-11 82.4 20.5 143 134-298 76-221 (408)
24 PF13229 Beta_helix: Right han 98.8 1.1E-07 2.3E-12 81.9 12.2 139 170-329 2-144 (158)
25 PRK10123 wcaM putative colanic 98.8 2.5E-07 5.5E-12 84.6 14.7 228 42-321 31-283 (464)
26 TIGR03808 RR_plus_rpt_1 twin-a 98.7 1.6E-06 3.4E-11 85.3 20.2 147 169-330 107-291 (455)
27 PF03718 Glyco_hydro_49: Glyco 98.7 5E-06 1.1E-10 82.8 22.4 242 77-361 255-553 (582)
28 PF13229 Beta_helix: Right han 98.6 4.8E-07 1E-11 77.8 12.5 138 129-298 3-144 (158)
29 PF07602 DUF1565: Protein of u 98.6 3.7E-06 7.9E-11 77.4 16.4 168 63-299 16-195 (246)
30 PF12541 DUF3737: Protein of u 98.6 3.4E-06 7.3E-11 76.8 15.7 13 224-236 115-127 (277)
31 PF14592 Chondroitinas_B: Chon 98.5 1.5E-05 3.2E-10 78.4 21.0 33 61-96 3-35 (425)
32 COG3866 PelB Pectate lyase [Ca 98.5 1.5E-05 3.3E-10 73.8 19.2 62 129-211 95-165 (345)
33 PLN02480 Probable pectinestera 98.5 6.3E-05 1.4E-09 72.8 23.5 201 60-323 58-277 (343)
34 PF05048 NosD: Periplasmic cop 98.5 5.6E-06 1.2E-10 76.8 15.4 83 171-260 38-120 (236)
35 PF05048 NosD: Periplasmic cop 98.5 5.2E-06 1.1E-10 77.0 15.1 135 169-328 14-150 (236)
36 COG3866 PelB Pectate lyase [Ca 98.4 3.2E-05 7E-10 71.6 19.3 122 171-292 95-229 (345)
37 smart00656 Amb_all Amb_all dom 98.4 1.9E-05 4.2E-10 70.6 16.8 100 192-292 32-144 (190)
38 PLN02634 probable pectinestera 98.3 0.00035 7.7E-09 67.7 23.6 206 61-322 67-290 (359)
39 PLN02682 pectinesterase family 98.3 0.00063 1.4E-08 66.3 24.5 207 61-323 81-305 (369)
40 PLN02176 putative pectinestera 98.2 0.00043 9.3E-09 66.9 22.5 197 61-323 50-271 (340)
41 PRK10531 acyl-CoA thioesterase 98.2 0.00058 1.2E-08 67.5 23.4 142 170-323 199-376 (422)
42 smart00656 Amb_all Amb_all dom 98.2 0.00018 3.9E-09 64.4 16.9 119 170-298 33-173 (190)
43 PF00544 Pec_lyase_C: Pectate 98.1 4.1E-05 8.9E-10 69.1 11.9 99 193-292 38-158 (200)
44 PLN02665 pectinesterase family 98.1 0.0019 4.1E-08 63.1 23.5 206 61-323 79-298 (366)
45 PLN02773 pectinesterase 98.1 0.0015 3.2E-08 62.7 22.3 212 61-323 16-240 (317)
46 PLN02497 probable pectinestera 98.0 0.0019 4.1E-08 62.3 22.5 133 173-323 111-264 (331)
47 PLN02304 probable pectinestera 98.0 0.0015 3.3E-08 63.8 20.6 200 61-322 86-311 (379)
48 PLN02708 Probable pectinestera 97.9 0.0018 3.9E-08 66.9 21.6 212 61-323 252-487 (553)
49 PLN02170 probable pectinestera 97.9 0.0015 3.2E-08 66.6 20.4 206 61-323 236-452 (529)
50 PLN02671 pectinesterase 97.9 0.0022 4.7E-08 62.4 20.0 209 61-323 70-295 (359)
51 PLN02713 Probable pectinestera 97.9 0.0017 3.7E-08 67.2 20.3 208 61-323 261-489 (566)
52 PF12708 Pectate_lyase_3: Pect 97.9 0.00075 1.6E-08 61.6 16.1 123 179-327 94-224 (225)
53 PLN02432 putative pectinestera 97.9 0.004 8.7E-08 59.1 21.0 199 61-322 22-229 (293)
54 PLN02916 pectinesterase family 97.9 0.0024 5.2E-08 64.8 20.5 209 61-323 198-426 (502)
55 PLN02995 Probable pectinestera 97.8 0.0021 4.6E-08 66.2 19.6 210 61-323 234-461 (539)
56 PLN02506 putative pectinestera 97.8 0.0028 6E-08 65.2 19.5 206 61-323 243-459 (537)
57 PLN02468 putative pectinestera 97.8 0.0025 5.3E-08 66.1 19.3 210 61-323 269-490 (565)
58 PLN02201 probable pectinestera 97.8 0.0046 1E-07 63.3 20.9 208 61-323 217-442 (520)
59 PLN02933 Probable pectinestera 97.8 0.0063 1.4E-07 62.3 21.7 209 61-323 229-454 (530)
60 PLN02745 Putative pectinestera 97.7 0.0042 9E-08 64.7 20.3 208 61-323 296-521 (596)
61 PF01095 Pectinesterase: Pecti 97.7 0.0015 3.4E-08 62.5 16.0 207 60-323 10-236 (298)
62 PLN02217 probable pectinestera 97.7 0.0038 8.2E-08 65.5 19.8 210 61-323 261-486 (670)
63 PLN02416 probable pectinestera 97.7 0.0041 8.9E-08 64.1 19.5 210 61-323 241-466 (541)
64 PLN03043 Probable pectinestera 97.7 0.007 1.5E-07 62.5 21.1 208 61-323 234-462 (538)
65 PLN02484 probable pectinestera 97.7 0.0075 1.6E-07 62.8 21.0 209 61-323 283-509 (587)
66 PLN02301 pectinesterase/pectin 97.7 0.0062 1.3E-07 62.8 20.0 208 61-323 247-472 (548)
67 PF01696 Adeno_E1B_55K: Adenov 97.6 0.012 2.6E-07 57.4 20.3 134 80-265 66-204 (386)
68 PLN02488 probable pectinestera 97.6 0.013 2.7E-07 59.5 20.9 207 60-322 207-432 (509)
69 PLN02197 pectinesterase 97.6 0.0087 1.9E-07 62.2 20.1 211 61-323 286-514 (588)
70 PLN02313 Pectinesterase/pectin 97.5 0.011 2.4E-07 61.6 19.7 210 61-323 286-511 (587)
71 PLN02990 Probable pectinestera 97.5 0.018 3.8E-07 59.9 20.8 211 61-323 270-496 (572)
72 PF00544 Pec_lyase_C: Pectate 97.5 0.0022 4.8E-08 57.8 12.6 120 171-298 39-187 (200)
73 PLN02314 pectinesterase 97.5 0.0097 2.1E-07 62.1 18.8 208 61-323 289-509 (586)
74 COG4677 PemB Pectin methyleste 97.1 0.018 3.9E-07 54.3 14.4 196 60-294 92-321 (405)
75 PF12218 End_N_terminal: N ter 96.9 0.001 2.3E-08 46.4 3.3 39 53-94 1-39 (67)
76 COG3420 NosD Nitrous oxidase a 96.7 0.025 5.3E-07 53.7 11.7 65 169-238 121-192 (408)
77 PF03211 Pectate_lyase: Pectat 96.0 1.1 2.5E-05 40.4 18.3 82 168-257 54-136 (215)
78 PLN02773 pectinesterase 95.9 0.81 1.8E-05 44.1 17.8 114 195-324 97-213 (317)
79 PF03211 Pectate_lyase: Pectat 94.9 1.1 2.4E-05 40.5 13.8 129 200-356 61-194 (215)
80 PF01696 Adeno_E1B_55K: Adenov 94.8 4.6 0.0001 39.8 20.8 87 196-296 117-204 (386)
81 PF14592 Chondroitinas_B: Chon 94.4 0.94 2E-05 45.2 13.3 126 171-300 62-222 (425)
82 PLN02480 Probable pectinestera 94.2 2.7 5.8E-05 41.1 15.9 114 195-323 127-252 (343)
83 TIGR03804 para_beta_helix para 93.7 0.098 2.1E-06 34.5 3.5 39 194-237 2-40 (44)
84 TIGR03804 para_beta_helix para 93.6 0.12 2.7E-06 34.0 3.9 40 220-260 1-40 (44)
85 PF07602 DUF1565: Protein of u 93.6 0.71 1.5E-05 42.8 10.1 132 193-359 90-224 (246)
86 PLN02708 Probable pectinestera 93.2 6.3 0.00014 41.2 17.4 114 197-324 327-450 (553)
87 PLN02682 pectinesterase family 92.8 2.7 5.9E-05 41.3 13.4 114 196-323 159-280 (369)
88 PLN02665 pectinesterase family 92.3 4.2 9E-05 40.1 13.9 116 194-324 148-273 (366)
89 PLN02634 probable pectinestera 91.6 3.3 7.3E-05 40.5 12.3 111 198-323 147-266 (359)
90 PF01095 Pectinesterase: Pecti 91.5 2.1 4.5E-05 41.2 10.8 114 196-324 83-203 (298)
91 PLN02170 probable pectinestera 91.3 5.6 0.00012 41.1 14.1 117 194-324 307-428 (529)
92 PLN02916 pectinesterase family 91.3 5.9 0.00013 40.7 14.1 116 196-324 273-393 (502)
93 PLN02671 pectinesterase 91.2 3.9 8.5E-05 40.1 12.4 111 197-323 151-270 (359)
94 PLN02432 putative pectinestera 91.2 5.4 0.00012 38.1 13.0 112 197-323 91-205 (293)
95 PLN02506 putative pectinestera 90.4 4.9 0.00011 41.8 12.9 114 195-323 314-434 (537)
96 PLN02713 Probable pectinestera 90.2 5.5 0.00012 41.7 13.2 114 196-323 336-455 (566)
97 PLN02201 probable pectinestera 90.1 9.3 0.0002 39.5 14.5 115 196-323 289-408 (520)
98 PRK10531 acyl-CoA thioesterase 90.1 7.1 0.00015 39.1 13.2 118 194-324 200-337 (422)
99 PLN02217 probable pectinestera 90.1 4.4 9.5E-05 43.1 12.4 113 198-324 335-453 (670)
100 PLN02497 probable pectinestera 90.0 6.6 0.00014 38.1 12.7 113 197-323 112-239 (331)
101 PRK10123 wcaM putative colanic 90.0 9.2 0.0002 35.9 12.9 171 199-392 121-315 (464)
102 PLN02933 Probable pectinestera 90.0 6.9 0.00015 40.5 13.4 115 196-323 301-420 (530)
103 PLN03043 Probable pectinestera 89.8 7.5 0.00016 40.5 13.7 116 195-324 308-429 (538)
104 PLN02304 probable pectinestera 89.7 10 0.00023 37.4 13.9 114 197-323 159-287 (379)
105 PF08480 Disaggr_assoc: Disagg 89.7 4.9 0.00011 35.2 10.2 72 251-326 3-79 (198)
106 PLN02698 Probable pectinestera 89.6 6.5 0.00014 40.5 12.9 142 171-323 264-419 (497)
107 PLN02488 probable pectinestera 89.6 10 0.00023 38.8 14.2 114 197-324 281-400 (509)
108 PLN02416 probable pectinestera 89.4 7.5 0.00016 40.5 13.4 115 196-323 313-432 (541)
109 PF09251 PhageP22-tail: Salmon 89.4 24 0.00053 35.1 18.5 57 250-323 311-367 (549)
110 PLN02698 Probable pectinestera 89.3 8.4 0.00018 39.7 13.5 115 196-324 266-386 (497)
111 PLN02176 putative pectinestera 89.3 9.5 0.00021 37.2 13.2 111 198-323 120-246 (340)
112 PLN02301 pectinesterase/pectin 89.2 8.2 0.00018 40.2 13.4 115 196-324 319-439 (548)
113 PLN02468 putative pectinestera 89.0 6.4 0.00014 41.2 12.6 114 197-324 342-461 (565)
114 PLN02745 Putative pectinestera 88.8 9.8 0.00021 40.1 13.8 113 197-324 369-488 (596)
115 PLN02484 probable pectinestera 88.7 8.9 0.00019 40.4 13.4 115 196-324 356-476 (587)
116 PLN02990 Probable pectinestera 88.6 9.4 0.0002 40.1 13.5 114 197-324 344-463 (572)
117 PLN02995 Probable pectinestera 88.6 7.3 0.00016 40.5 12.6 114 197-324 309-428 (539)
118 PLN02314 pectinesterase 88.2 11 0.00023 39.8 13.7 115 196-324 361-481 (586)
119 PLN02313 Pectinesterase/pectin 87.9 11 0.00023 39.8 13.4 114 197-324 359-478 (587)
120 PF09251 PhageP22-tail: Salmon 87.1 33 0.00071 34.2 15.1 37 167-206 145-181 (549)
121 PLN02197 pectinesterase 87.0 12 0.00026 39.3 13.1 115 196-324 360-481 (588)
122 PF08480 Disaggr_assoc: Disagg 84.9 26 0.00057 30.8 12.3 93 226-324 33-144 (198)
123 KOG1777 Putative Zn-finger pro 58.2 2.1E+02 0.0046 28.9 13.0 29 76-110 46-74 (625)
124 smart00710 PbH1 Parallel beta- 53.1 15 0.00032 20.0 2.3 19 281-299 3-22 (26)
125 smart00722 CASH Domain present 52.8 43 0.00093 27.4 6.0 68 174-244 73-144 (146)
126 COG4704 Uncharacterized protei 50.5 69 0.0015 26.7 6.4 35 59-94 59-95 (151)
127 COG4677 PemB Pectin methyleste 42.7 83 0.0018 30.4 6.6 84 198-291 187-285 (405)
128 PRK10081 entericidin B membran 31.1 55 0.0012 22.1 2.5 10 1-10 1-10 (48)
129 PRK13883 conjugal transfer pro 29.6 3.1E+02 0.0067 23.5 7.4 24 59-82 59-82 (151)
130 PF14262 DUF4353: Domain of un 28.1 5.1E+02 0.011 24.4 12.8 152 78-259 6-203 (264)
131 COG5567 Predicted small peripl 26.0 1.2E+02 0.0025 21.1 3.4 12 1-12 1-12 (58)
132 PRK14864 putative biofilm stre 25.6 3.5E+02 0.0075 21.6 7.3 6 44-49 52-57 (104)
133 PF10162 G8: G8 domain; Inter 24.3 1.9E+02 0.004 23.7 5.2 51 77-145 11-64 (125)
134 PHA00672 hypothetical protein 23.9 1.4E+02 0.0031 24.5 4.2 30 79-115 50-79 (152)
135 PRK09752 adhesin; Provisional 22.3 1.3E+03 0.027 26.9 15.1 10 229-238 155-164 (1250)
136 PF05342 Peptidase_M26_N: M26 21.9 56 0.0012 30.3 1.7 40 345-389 210-250 (250)
137 PF08139 LPAM_1: Prokaryotic m 21.5 1.1E+02 0.0025 17.5 2.3 11 6-16 8-18 (25)
138 PF03032 Brevenin: Brevenin/es 21.2 56 0.0012 21.8 1.2 21 5-25 3-23 (46)
No 1
>PLN02155 polygalacturonase
Probab=100.00 E-value=2.3e-76 Score=576.81 Aligned_cols=366 Identities=41% Similarity=0.756 Sum_probs=335.3
Q ss_pred eeEEeeeCCccCCCCcccHHHHHHHHHHHhhcCCCeEEEecCCeeeEeeeEEecCccCccceEEeEecEEEeecCccccc
Q 047315 44 LLVNVKDFGARADGRTDDSKAFEAAWKEACETTGAVTLLVPHGTYLIGPIKFAGPCKNVSNITVQMKGYLIASTNLSEYR 123 (417)
Q Consensus 44 ~~~nv~d~GA~gdg~tDdt~aiq~Al~~a~~~~ggg~V~ip~GtY~~~~l~l~~~~~~~s~~~l~~~G~l~~~~~~~~~~ 123 (417)
+++||+||||+|||.||||+|||+||+++|+..||++|+||+|+|++++|.|.|+|| |+++|+++|+|+.+.++..|.
T Consensus 26 ~~~nv~~yGA~gDG~td~t~Ai~~Ai~~aC~~~gGg~v~vP~G~yl~g~i~l~gpck--snv~l~l~G~l~~~~d~~~~~ 103 (394)
T PLN02155 26 NVFNVVSFGAKPDGVTDSTAAFLKAWQGACGSASSATVVVPTGTFLLKVITFGGPCK--SKITFQVAGTVVAPEDYRTFG 103 (394)
T ss_pred cEEEhhhcCcCCCCccccHHHHHHHHHHHcccCCCeEEEECCCcEEEEEEEEcccCC--CCceEEEeeEEECcccccccc
Confidence 489999999999999999999999998889988999999999999999999998888 999999999999888887776
Q ss_pred CCCCeEEEcCceeeEEecCeEEcCCCcccccCCCCCCCCCCCCCcceEEEEeecceEEEeeEEecCCcceEEEeceecEE
Q 047315 124 FGAGWVEFGGVEGLTLTGGGTFDGRGAKAWPYNGCPTHFNCKLLPTNVKFVAMKKTIVRRITSVNSKSFHIALVECKNFR 203 (417)
Q Consensus 124 ~~~~~i~~~~~~nv~I~G~G~idg~g~~~~~~~~~~~~~~~~~~~~~i~~~~~~nv~I~~v~i~n~~~~~i~~~~~~~v~ 203 (417)
....|+.+.+.+++.|+| |+|||+|+.||... ......+.+|+++.+.+|++++|++++++|+|.|++++..|++++
T Consensus 104 ~~~~wi~~~~~~~i~i~G-G~iDGqG~~ww~~~--~~~~~~~~~p~~i~~~~~~nv~i~gitl~nSp~w~i~~~~~~nv~ 180 (394)
T PLN02155 104 NSGYWILFNKVNRFSLVG-GTFDARANGFWSCR--KSGQNCPPGVRSISFNSAKDVIISGVKSMNSQVSHMTLNGCTNVV 180 (394)
T ss_pred ccceeEEEECcCCCEEEc-cEEecCceeEEEcc--cCCCCCCCcccceeEEEeeeEEEECeEEEcCCCeEEEEECeeeEE
Confidence 556799999999999999 99999999999743 233344557889999999999999999999999999999999999
Q ss_pred EEeEEEECCCCCCCCCeEEeecceeEEEEeeEEecCCceEEecCCceeEEEEeeEEcCCceEEEcccccCCCCCcEEEEE
Q 047315 204 GSKIKISAPANSPNTDGIHIERSSSVHVSRSHIGTGDDCISVGQGNSEVTIASITCGPGHGISVGSLGRYPNEGDVRGLV 283 (417)
Q Consensus 204 i~n~~i~~~~~~~~~DGi~~~~s~nv~I~n~~i~~gdD~i~i~s~s~nv~i~n~~~~~~~gi~igs~~~~~~~~~v~ni~ 283 (417)
|++++|.++.+++|+|||++.+|+||+|+||.|.++||||+++++++||+|+||+|..+||++|||++++...+.|+||+
T Consensus 181 i~~v~I~~p~~~~NtDGidi~~s~nV~I~~~~I~~gDDcIaik~gs~nI~I~n~~c~~GhGisIGS~g~~~~~~~V~nV~ 260 (394)
T PLN02155 181 VRNVKLVAPGNSPNTDGFHVQFSTGVTFTGSTVQTGDDCVAIGPGTRNFLITKLACGPGHGVSIGSLAKELNEDGVENVT 260 (394)
T ss_pred EEEEEEECCCCCCCCCccccccceeEEEEeeEEecCCceEEcCCCCceEEEEEEEEECCceEEeccccccCCCCcEEEEE
Confidence 99999999988899999999999999999999999999999999999999999999999999999998765568999999
Q ss_pred EEeeEEecCceEEEEEEecCCCCCeeEEeEEEEeEEEecCCccEEEEeeeCCCC-CCCCCCCCceeEeeEEEEeEEEEec
Q 047315 284 VRDSTMTGTMNGVRIKTWANSPGSSAATNMTFENIIMNNVSNPIIIDQAYCPFT-SCPTKPPSRVKLSDIYFKNIRGTSS 362 (417)
Q Consensus 284 i~n~~~~~~~~gi~i~~~~~~~~g~~i~ni~~~ni~~~~~~~~i~i~~~~~~~~-~~~~~~~~~~~v~nI~~~ni~~~~~ 362 (417)
++||+|.++.+|++||+|.+.++|+ ++||+|+||+|+++++||.|+|.|++.. .|+ ...+.+.++||+|+||+++..
T Consensus 261 v~n~~~~~t~~GirIKT~~~~~gG~-v~nI~f~ni~m~~v~~pI~i~q~Y~~~~~~~~-~~~s~v~i~~It~~ni~gt~~ 338 (394)
T PLN02155 261 VSSSVFTGSQNGVRIKSWARPSTGF-VRNVFFQDLVMKNVENPIIIDQNYCPTHEGCP-NEYSGVKISQVTYKNIQGTSA 338 (394)
T ss_pred EEeeEEeCCCcEEEEEEecCCCCEE-EEEEEEEeEEEcCccccEEEEecccCCCCCCc-CCCCCeEEEEEEEEeeEEEec
Confidence 9999999999999999997644788 9999999999999999999999997753 354 335567999999999999987
Q ss_pred CCceEEEeecCCCceeeEEEEeEEEEeCCCCCCCCeeeecceeeeeceecCCCCC
Q 047315 363 SAVAVALECSKGIPCQNIYLENVHLDLSSGEKQPTSSCKNVEAKYIGTQVPPPCA 417 (417)
Q Consensus 363 ~~~~~~i~~~~~~~~~~i~~~nv~i~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~ 417 (417)
...++.+.|.++.||+||+|+||+++..++ .+..+.|+||++.+.+.++||+|.
T Consensus 339 ~~~a~~l~c~~~~pc~~I~l~nv~i~~~~~-~~~~~~C~n~~G~~~~~~~p~~c~ 392 (394)
T PLN02155 339 TQEAMKLVCSKSSPCTGITLQDIKLTYNKG-TPATSFCFNAVGKSLGVIQPTSCL 392 (394)
T ss_pred CCceEEEEeCCCCCEEEEEEEeeEEEecCC-CccCcEEeccEeEEcccCCccccc
Confidence 677899999999999999999999998864 567899999999999999999994
No 2
>PLN02793 Probable polygalacturonase
Probab=100.00 E-value=6.4e-76 Score=582.58 Aligned_cols=369 Identities=42% Similarity=0.765 Sum_probs=337.1
Q ss_pred ceeEEeeeCCccCCCCcccHHHHHHHHHHHhhcCCCeEEEecCC-eeeEeeeEEecCccCccceEEeEecEEEeecCccc
Q 047315 43 SLLVNVKDFGARADGRTDDSKAFEAAWKEACETTGAVTLLVPHG-TYLIGPIKFAGPCKNVSNITVQMKGYLIASTNLSE 121 (417)
Q Consensus 43 ~~~~nv~d~GA~gdg~tDdt~aiq~Al~~a~~~~ggg~V~ip~G-tY~~~~l~l~~~~~~~s~~~l~~~G~l~~~~~~~~ 121 (417)
++++||+||||+|||.+|||+|||+||+++|+..||++|+||+| +|+++++.|.++|| |+++|+++|+|+++.++.+
T Consensus 50 ~~~~~V~dfGA~gDG~tddT~Aiq~Ai~~aC~~~ggg~v~vP~G~~fl~~~i~l~gpck--s~vtL~l~g~l~~~~d~~~ 127 (443)
T PLN02793 50 ERVLHVGDFGAKGDGVTDDTQAFKEAWKMACSSKVKTRIVIPAGYTFLVRPIDLGGPCK--AKLTLQISGTIIAPKDPDV 127 (443)
T ss_pred ceEEEhhhcccCCCCCCccHHHHHHHHHHHhccCCCCEEEECCCceEEEEEEEECCccC--CCeEEEEEEEEEccCChHH
Confidence 36999999999999999999999999988899889999999999 59999999988877 9999999999999999999
Q ss_pred ccCC--CCeEEEcCceeeEEecCeEEcCCCcccccCCCC-CCCCCCCCCcceEEEEeecceEEEeeEEecCCcceEEEec
Q 047315 122 YRFG--AGWVEFGGVEGLTLTGGGTFDGRGAKAWPYNGC-PTHFNCKLLPTNVKFVAMKKTIVRRITSVNSKSFHIALVE 198 (417)
Q Consensus 122 ~~~~--~~~i~~~~~~nv~I~G~G~idg~g~~~~~~~~~-~~~~~~~~~~~~i~~~~~~nv~I~~v~i~n~~~~~i~~~~ 198 (417)
|+.. +.||++.+.+|++|+|.|+|||+|+.||..... .....+..||++|.+.+|+|++|++++++|+|.|++++..
T Consensus 128 w~~~~~~~~i~~~~~~ni~ItG~G~IDG~G~~ww~~~~~~~~~~~~~~rP~~i~f~~~~nv~v~gitl~nSp~~~i~~~~ 207 (443)
T PLN02793 128 WKGLNPRKWLYFHGVNHLTVEGGGTVNGMGHEWWAQSCKINHTNPCRHAPTAITFHKCKDLRVENLNVIDSQQMHIAFTN 207 (443)
T ss_pred ccCCCCceEEEEecCceEEEEeceEEECCCcccccccccccCCCCccCCceEEEEEeeccEEEECeEEEcCCCeEEEEEc
Confidence 9753 579999999999999999999999999974210 1112234689999999999999999999999999999999
Q ss_pred eecEEEEeEEEECCCCCCCCCeEEeecceeEEEEeeEEecCCceEEecCCceeEEEEeeEEcCCceEEEcccccCCCCCc
Q 047315 199 CKNFRGSKIKISAPANSPNTDGIHIERSSSVHVSRSHIGTGDDCISVGQGNSEVTIASITCGPGHGISVGSLGRYPNEGD 278 (417)
Q Consensus 199 ~~~v~i~n~~i~~~~~~~~~DGi~~~~s~nv~I~n~~i~~gdD~i~i~s~s~nv~i~n~~~~~~~gi~igs~~~~~~~~~ 278 (417)
|++++|++++|.++...+|+|||++.+|+||+|+||+|.++||||+++++++||+|+||+|..+||++|||++++...+.
T Consensus 208 ~~nv~i~~l~I~~p~~spNTDGIdi~~s~nV~I~n~~I~~gDDcIaik~~s~nI~I~n~~c~~GhGisIGSlg~~~~~~~ 287 (443)
T PLN02793 208 CRRVTISGLKVIAPATSPNTDGIHISASRGVVIKDSIVRTGDDCISIVGNSSRIKIRNIACGPGHGISIGSLGKSNSWSE 287 (443)
T ss_pred cCcEEEEEEEEECCCCCCCCCcEeeeccceEEEEeCEEeCCCCeEEecCCcCCEEEEEeEEeCCccEEEecccCcCCCCc
Confidence 99999999999998888999999999999999999999999999999999999999999999999999999988776788
Q ss_pred EEEEEEEeeEEecCceEEEEEEecCCCCCeeEEeEEEEeEEEecCCccEEEEeeeCCC-CCCCCCCCCceeEeeEEEEeE
Q 047315 279 VRGLVVRDSTMTGTMNGVRIKTWANSPGSSAATNMTFENIIMNNVSNPIIIDQAYCPF-TSCPTKPPSRVKLSDIYFKNI 357 (417)
Q Consensus 279 v~ni~i~n~~~~~~~~gi~i~~~~~~~~g~~i~ni~~~ni~~~~~~~~i~i~~~~~~~-~~~~~~~~~~~~v~nI~~~ni 357 (417)
|+||+|+||++.++.+|++||+|.++ +|. ++||+|+||+|+++.+||.|+++|++. ..|. +.++.+.++||+|+||
T Consensus 288 V~nV~v~n~~~~~t~~GirIKt~~g~-~G~-v~nItf~ni~m~nv~~pI~I~q~Y~~~~~~~~-~~ts~v~I~nI~~~nI 364 (443)
T PLN02793 288 VRDITVDGAFLSNTDNGVRIKTWQGG-SGN-ASKITFQNIFMENVSNPIIIDQYYCDSRKPCA-NQTSAVKVENISFVHI 364 (443)
T ss_pred EEEEEEEccEEeCCCceEEEEEeCCC-CEE-EEEEEEEeEEEecCCceEEEEeeecCCCCCCC-CCCCCeEEEeEEEEEE
Confidence 99999999999999999999999986 678 999999999999999999999999763 3564 4556789999999999
Q ss_pred EEEecCCceEEEeecCCCceeeEEEEeEEEEeCCCCCCCCeeeecceeeeeceecCCCCC
Q 047315 358 RGTSSSAVAVALECSKGIPCQNIYLENVHLDLSSGEKQPTSSCKNVEAKYIGTQVPPPCA 417 (417)
Q Consensus 358 ~~~~~~~~~~~i~~~~~~~~~~i~~~nv~i~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~ 417 (417)
+++.....++.+.|+++.||+||+|+||+++..+++ .....|.|+++...|.+.||||.
T Consensus 365 ~Gt~~~~~ai~l~cs~~~pc~ni~l~nI~l~~~~g~-~~~~~C~n~~g~~~~~~~p~~C~ 423 (443)
T PLN02793 365 KGTSATEEAIKFACSDSSPCEGLYLEDVQLLSSTGD-FTESFCWEAYGSSSGQVYPPPCF 423 (443)
T ss_pred EEEEcccccEEEEeCCCCCEeeEEEEeeEEEecCCC-CCCcEEEccEEeECCeEcCCccc
Confidence 999865668999999999999999999999988764 66789999999999999999993
No 3
>PLN02188 polygalacturonase/glycoside hydrolase family protein
Probab=100.00 E-value=3.9e-76 Score=577.74 Aligned_cols=371 Identities=73% Similarity=1.227 Sum_probs=338.0
Q ss_pred CceeEEeeeCCccCCCCcccHHHHHHHHHHHhhcCCCeEEEecCCeeeEeeeEEecCccCccceEEeEecEEEeecCccc
Q 047315 42 SSLLVNVKDFGARADGRTDDSKAFEAAWKEACETTGAVTLLVPHGTYLIGPIKFAGPCKNVSNITVQMKGYLIASTNLSE 121 (417)
Q Consensus 42 ~~~~~nv~d~GA~gdg~tDdt~aiq~Al~~a~~~~ggg~V~ip~GtY~~~~l~l~~~~~~~s~~~l~~~G~l~~~~~~~~ 121 (417)
.+.++||+||||+|||.+|||+|||+||+++|+..||++|+||+|+|+++++.|+++|++.++++| +|+++.++++
T Consensus 33 ~~~~~nv~d~GA~gDg~tddT~Ai~~Ai~~aC~~~Ggg~V~vP~G~yl~g~i~lkgpc~~~s~v~l----~L~~s~d~~~ 108 (404)
T PLN02188 33 STFLFDVRSFGARANGHTDDSKAFMAAWKAACASTGAVTLLIPPGTYYIGPVQFHGPCTNVSSLTF----TLKAATDLSR 108 (404)
T ss_pred CceEEehhhcCcCCCCCeeCHHHHHHHHHHHhccCCCeEEEECCCeEEEEeEEeCCCcCcceeEEE----EEEcCCCHHH
Confidence 446999999999999999999999999988899888999999999999999999988874455655 8999999999
Q ss_pred ccCCCCeEEEcCceeeEEecCeEEcCCCcccccCCCCCCCCCCCCCcceEEEEeecceEEEeeEEecCCcceEEEeceec
Q 047315 122 YRFGAGWVEFGGVEGLTLTGGGTFDGRGAKAWPYNGCPTHFNCKLLPTNVKFVAMKKTIVRRITSVNSKSFHIALVECKN 201 (417)
Q Consensus 122 ~~~~~~~i~~~~~~nv~I~G~G~idg~g~~~~~~~~~~~~~~~~~~~~~i~~~~~~nv~I~~v~i~n~~~~~i~~~~~~~ 201 (417)
|+....|+.+..++|++|+|.|+|||+|+.||....+.....+..||++|.|.+|+|++|++++++|+|.|++++..|++
T Consensus 109 y~~~~~~i~~~~~~ni~I~G~G~IDG~G~~ww~~~~~~~~~~~~~rP~~i~f~~~~nv~i~gitl~nSp~w~i~~~~~~~ 188 (404)
T PLN02188 109 YGSGNDWIEFGWVNGLTLTGGGTFDGQGAAAWPFNKCPIRKDCKLLPTSVKFVNMNNTVVRGITSVNSKFFHIALVECRN 188 (404)
T ss_pred CCCccceEEEeceeeEEEEeeEEEeCCCcccccccccccCCCCCcCceEEEEEeeeeEEEeCeEEEcCCCeEEEEEcccc
Confidence 98777899999999999999999999999999754333334556789999999999999999999999999999999999
Q ss_pred EEEEeEEEECCCCCCCCCeEEeecceeEEEEeeEEecCCceEEecCCceeEEEEeeEEcCCceEEEcccccCCCCCcEEE
Q 047315 202 FRGSKIKISAPANSPNTDGIHIERSSSVHVSRSHIGTGDDCISVGQGNSEVTIASITCGPGHGISVGSLGRYPNEGDVRG 281 (417)
Q Consensus 202 v~i~n~~i~~~~~~~~~DGi~~~~s~nv~I~n~~i~~gdD~i~i~s~s~nv~i~n~~~~~~~gi~igs~~~~~~~~~v~n 281 (417)
++|++++|.++.+++|+|||++.+|+||+|+||+|.++||||+++++++||+|+|+.|..+||++|||.|+++..+.++|
T Consensus 189 v~i~~v~I~~~~~spNtDGidi~~s~nV~I~n~~I~~GDDcIaiksg~~nI~I~n~~c~~ghGisiGSlG~~~~~~~V~n 268 (404)
T PLN02188 189 FKGSGLKISAPSDSPNTDGIHIERSSGVYISDSRIGTGDDCISIGQGNSQVTITRIRCGPGHGISVGSLGRYPNEGDVTG 268 (404)
T ss_pred EEEEEEEEeCCCCCCCCCcEeeeCcccEEEEeeEEeCCCcEEEEccCCccEEEEEEEEcCCCcEEeCCCCCCCcCCcEEE
Confidence 99999999998888999999999999999999999999999999999999999999999999999999988777788999
Q ss_pred EEEEeeEEecCceEEEEEEecCC-CCCeeEEeEEEEeEEEecCCccEEEEeeeCCCCCCCCCCCCceeEeeEEEEeEEEE
Q 047315 282 LVVRDSTMTGTMNGVRIKTWANS-PGSSAATNMTFENIIMNNVSNPIIIDQAYCPFTSCPTKPPSRVKLSDIYFKNIRGT 360 (417)
Q Consensus 282 i~i~n~~~~~~~~gi~i~~~~~~-~~g~~i~ni~~~ni~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~v~nI~~~ni~~~ 360 (417)
|+|+||++.++.+|++||+|.+. +.|+ ++||+|+||+|+++.+||.|++.|++...|....++.+.++||+|+||+++
T Consensus 269 V~v~n~~~~~t~~GiriKt~~g~~~~G~-v~nI~f~ni~m~~v~~pI~i~~~Y~~~~~~~~~~~s~v~I~nIt~~nI~gt 347 (404)
T PLN02188 269 LVVRDCTFTGTTNGIRIKTWANSPGKSA-ATNMTFENIVMNNVTNPIIIDQKYCPFYSCESKYPSGVTLSDIYFKNIRGT 347 (404)
T ss_pred EEEEeeEEECCCcEEEEEEecCCCCceE-EEEEEEEeEEecCccceEEEEccccCCCCCCcCCCCCcEEEeEEEEEEEEE
Confidence 99999999999999999999764 2578 999999999999999999999999876666544456789999999999999
Q ss_pred ecCCceEEEeecCCCceeeEEEEeEEEEeCCCCCCCCeeeecceeeeeceecCCCCC
Q 047315 361 SSSAVAVALECSKGIPCQNIYLENVHLDLSSGEKQPTSSCKNVEAKYIGTQVPPPCA 417 (417)
Q Consensus 361 ~~~~~~~~i~~~~~~~~~~i~~~nv~i~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~ 417 (417)
.....++.+.|+++.||+||+|+||+++..++.....+.|+||++.+.|.+.||||.
T Consensus 348 ~~~~~a~~l~cs~~~pc~ni~~~nV~i~~~~g~~~~~~~C~nv~g~~~g~~~p~~C~ 404 (404)
T PLN02188 348 SSSQVAVLLKCSRGVPCQGVYLQDVHLDLSSGEGGTSSSCENVRAKYIGTQIPPPCP 404 (404)
T ss_pred ecCceEEEEEECCCCCEeeEEEEeeEEEecCCCCCcCceeEcceeEEcccCcCCCCC
Confidence 876678999999999999999999999988664566899999999999999999995
No 4
>PLN02218 polygalacturonase ADPG
Probab=100.00 E-value=8.7e-75 Score=571.83 Aligned_cols=365 Identities=45% Similarity=0.806 Sum_probs=333.9
Q ss_pred cCceeEEeeeCCccCCCCcccHHHHHHHHHHHhhcCCCeEEEecCC-eeeEeeeEEecCccCccceEEeEecEEEeecCc
Q 047315 41 TSSLLVNVKDFGARADGRTDDSKAFEAAWKEACETTGAVTLLVPHG-TYLIGPIKFAGPCKNVSNITVQMKGYLIASTNL 119 (417)
Q Consensus 41 ~~~~~~nv~d~GA~gdg~tDdt~aiq~Al~~a~~~~ggg~V~ip~G-tY~~~~l~l~~~~~~~s~~~l~~~G~l~~~~~~ 119 (417)
.+++++||+||||+|||.+|||+|||+||+++|++.|+++|+||+| +|+++++.|+|++| ++++|++.|+|+++.++
T Consensus 63 ~~~~~~nv~dfGA~gDG~tddT~Af~~Ai~~aCs~~Ggg~v~vP~G~tyl~~~i~l~gp~k--s~~~l~l~g~L~~s~d~ 140 (431)
T PLN02218 63 RTPTTVSVSDFGAKGDGKTDDTQAFVNAWKKACSSNGAVNLLVPKGNTYLLKSIQLTGPCK--SIRTVQIFGTLSASQKR 140 (431)
T ss_pred CCCcEEEeeecccCCCCCcccHHHHHHHHHHhhhcCCCcEEEECCCCeEEEeeeEecCccC--CceEEEEEEEEEeCCCh
Confidence 3567999999999999999999999999988999888999999999 69999999999888 99999999999999999
Q ss_pred ccccCCCCeEEEcCceeeEEecC--eEEcCCCcccccCCCC-CCCCCCCCCcceEEEEeecceEEEeeEEecCCcceEEE
Q 047315 120 SEYRFGAGWVEFGGVEGLTLTGG--GTFDGRGAKAWPYNGC-PTHFNCKLLPTNVKFVAMKKTIVRRITSVNSKSFHIAL 196 (417)
Q Consensus 120 ~~~~~~~~~i~~~~~~nv~I~G~--G~idg~g~~~~~~~~~-~~~~~~~~~~~~i~~~~~~nv~I~~v~i~n~~~~~i~~ 196 (417)
..|+....||.+.+.+|++|+|. |+|||+|+.||..... .+...+..||++|.|.+|+|++|++++++|+|.|++++
T Consensus 141 ~~y~~~~~wi~~~~~~ni~I~G~~~GtIDG~G~~WW~~~~~~~~~~~~~~rP~~i~f~~~~nv~I~gitl~nSp~w~i~~ 220 (431)
T PLN02218 141 SDYKDISKWIMFDGVNNLSVDGGSTGVVDGNGETWWQNSCKRNKAKPCTKAPTALTFYNSKSLIVKNLRVRNAQQIQISI 220 (431)
T ss_pred hhccccccCEEEecCcEEEEECCCCcEEeCCchhhhhcccccCCcCccCcCCEEEEEEccccEEEeCeEEEcCCCEEEEE
Confidence 99987789999999999999996 9999999999975311 11223456899999999999999999999999999999
Q ss_pred eceecEEEEeEEEECCCCCCCCCeEEeecceeEEEEeeEEecCCceEEecCCceeEEEEeeEEcCCceEEEcccccCCCC
Q 047315 197 VECKNFRGSKIKISAPANSPNTDGIHIERSSSVHVSRSHIGTGDDCISVGQGNSEVTIASITCGPGHGISVGSLGRYPNE 276 (417)
Q Consensus 197 ~~~~~v~i~n~~i~~~~~~~~~DGi~~~~s~nv~I~n~~i~~gdD~i~i~s~s~nv~i~n~~~~~~~gi~igs~~~~~~~ 276 (417)
..|++|+|++++|.++.+++|+|||++.+|+||+|+||+|.+|||||+++++++||+|+||+|..+||++|||++++...
T Consensus 221 ~~~~nV~i~~v~I~a~~~spNTDGIdi~ss~nV~I~n~~I~tGDDcIaIksgs~nI~I~n~~c~~GHGisIGS~g~~~~~ 300 (431)
T PLN02218 221 EKCSNVQVSNVVVTAPADSPNTDGIHITNTQNIRVSNSIIGTGDDCISIESGSQNVQINDITCGPGHGISIGSLGDDNSK 300 (431)
T ss_pred EceeeEEEEEEEEeCCCCCCCCCcEeecccceEEEEccEEecCCceEEecCCCceEEEEeEEEECCCCEEECcCCCCCCC
Confidence 99999999999999988889999999999999999999999999999999999999999999999999999999877656
Q ss_pred CcEEEEEEEeeEEecCceEEEEEEecCCCCCeeEEeEEEEeEEEecCCccEEEEeeeCCCCCCCCCCCCceeEeeEEEEe
Q 047315 277 GDVRGLVVRDSTMTGTMNGVRIKTWANSPGSSAATNMTFENIIMNNVSNPIIIDQAYCPFTSCPTKPPSRVKLSDIYFKN 356 (417)
Q Consensus 277 ~~v~ni~i~n~~~~~~~~gi~i~~~~~~~~g~~i~ni~~~ni~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~v~nI~~~n 356 (417)
+.|+||+|+||++.++.+|++||+|.++ +|+ ++||+|+||+|+++++||.|++.|++...|. ..++.+.++||+|+|
T Consensus 301 ~~V~nV~v~n~~~~~t~nGvRIKT~~Gg-~G~-v~nI~f~ni~m~~V~~pI~Idq~Y~~~~~~~-~~~s~v~I~nI~~~N 377 (431)
T PLN02218 301 AFVSGVTVDGAKLSGTDNGVRIKTYQGG-SGT-ASNIIFQNIQMENVKNPIIIDQDYCDKSKCT-SQQSAVQVKNVVYRN 377 (431)
T ss_pred ceEEEEEEEccEEecCCcceEEeecCCC-CeE-EEEEEEEeEEEEcccccEEEEeeccCCCCCC-CCCCCeEEEEEEEEe
Confidence 8899999999999999999999999986 688 9999999999999999999999998876676 445678999999999
Q ss_pred EEEEecCCceEEEeecCCCceeeEEEEeEEEEeCCCCCCCCeeeecceeeeeceecCCCCC
Q 047315 357 IRGTSSSAVAVALECSKGIPCQNIYLENVHLDLSSGEKQPTSSCKNVEAKYIGTQVPPPCA 417 (417)
Q Consensus 357 i~~~~~~~~~~~i~~~~~~~~~~i~~~nv~i~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~ 417 (417)
|+++.....++.+.|.++.||+||+|+||+|++. ...|+||.+...|.++| .|.
T Consensus 378 I~gtsa~~~ai~l~cs~~~pc~nI~l~nV~i~~~------~~~c~n~~~~~~~~~~p-~c~ 431 (431)
T PLN02218 378 ISGTSASDVAITFNCSKNYPCQGIVLDNVNIKGG------KATCTNANVVDKGAVSP-QCN 431 (431)
T ss_pred EEEEecCCcEEEEEECCCCCEeeEEEEeEEEECC------eeeEEEeeEEEcccCCC-CCC
Confidence 9999866678999999999999999999999853 45799999999999666 773
No 5
>PLN03010 polygalacturonase
Probab=100.00 E-value=7.4e-73 Score=553.04 Aligned_cols=354 Identities=41% Similarity=0.738 Sum_probs=326.8
Q ss_pred eeEEeeeCCccCCCCcccHHHHHHHHHHHhhcCC-CeEEEecCC-eeeEeeeEEecCccCccceEEeEecEEEeecCccc
Q 047315 44 LLVNVKDFGARADGRTDDSKAFEAAWKEACETTG-AVTLLVPHG-TYLIGPIKFAGPCKNVSNITVQMKGYLIASTNLSE 121 (417)
Q Consensus 44 ~~~nv~d~GA~gdg~tDdt~aiq~Al~~a~~~~g-gg~V~ip~G-tY~~~~l~l~~~~~~~s~~~l~~~G~l~~~~~~~~ 121 (417)
+++||+||||+|||++|||+|||+|++++|+..+ +++|+||+| +|++++|.|+++|+. ++++|+++|+|+++.++.+
T Consensus 45 ~~~nV~dyGA~gDG~tddt~A~~~Ai~~ac~~~g~~g~v~vP~G~~yl~~~i~l~~pc~~-~~v~l~l~G~l~~~~d~~~ 123 (409)
T PLN03010 45 QNYNVLKFGAKGDGQTDDSNAFLQAWNATCGGEGNINTLLIPSGKTYLLQPIEFKGPCKS-TSIKVQLDGIIVAPSNIVA 123 (409)
T ss_pred cEEeeeecCcCCCCCcccHHHHHHHHHHHccCCCCceEEEECCCCeEEEEeEEecCCCCC-CcEEEEEccEEEccCChhh
Confidence 5899999999999999999999999987785432 389999999 799999999987763 6899999999999999999
Q ss_pred ccC--CCCeEEEcCceeeEEecCeEEcCCCcccccCCCCCCCCCCCCCcceEEEEeecceEEEeeEEecCCcceEEEece
Q 047315 122 YRF--GAGWVEFGGVEGLTLTGGGTFDGRGAKAWPYNGCPTHFNCKLLPTNVKFVAMKKTIVRRITSVNSKSFHIALVEC 199 (417)
Q Consensus 122 ~~~--~~~~i~~~~~~nv~I~G~G~idg~g~~~~~~~~~~~~~~~~~~~~~i~~~~~~nv~I~~v~i~n~~~~~i~~~~~ 199 (417)
|+. ...|+.+.+.+|+.|+|.|+|||+|+.||. ++.+.+|+|++|++++++|+|.|++++..|
T Consensus 124 w~~~~~~~wi~f~~v~nv~I~G~G~IDG~G~~ww~---------------~l~~~~~~nv~v~gitl~nsp~~~i~i~~~ 188 (409)
T PLN03010 124 WSNPKSQMWISFSTVSGLMIDGSGTIDGRGSSFWE---------------ALHISKCDNLTINGITSIDSPKNHISIKTC 188 (409)
T ss_pred ccCCCCcceEEEecccccEEeeceEEeCCCccccc---------------eEEEEeecCeEEeeeEEEcCCceEEEEecc
Confidence 964 357999999999999999999999999996 489999999999999999999999999999
Q ss_pred ecEEEEeEEEECCCCCCCCCeEEeecceeEEEEeeEEecCCceEEecCCceeEEEEeeEEcCCceEEEcccccCCCCCcE
Q 047315 200 KNFRGSKIKISAPANSPNTDGIHIERSSSVHVSRSHIGTGDDCISVGQGNSEVTIASITCGPGHGISVGSLGRYPNEGDV 279 (417)
Q Consensus 200 ~~v~i~n~~i~~~~~~~~~DGi~~~~s~nv~I~n~~i~~gdD~i~i~s~s~nv~i~n~~~~~~~gi~igs~~~~~~~~~v 279 (417)
++++|++++|.++..++|+|||++.+|++|+|+||+|.++||||++++++.++.|+++.|..+||++|||+++++....|
T Consensus 189 ~nv~i~~i~I~a~~~s~NTDGiDi~~s~nV~I~n~~I~~gDDcIaiksgs~ni~I~~~~C~~gHGisIGS~g~~~~~~~V 268 (409)
T PLN03010 189 NYVAISKINILAPETSPNTDGIDISYSTNINIFDSTIQTGDDCIAINSGSSNINITQINCGPGHGISVGSLGADGANAKV 268 (409)
T ss_pred ccEEEEEEEEeCCCCCCCCCceeeeccceEEEEeeEEecCCCeEEecCCCCcEEEEEEEeECcCCEEEccCCCCCCCCee
Confidence 99999999999988889999999999999999999999999999999999999999999999999999999887666789
Q ss_pred EEEEEEeeEEecCceEEEEEEecCCCCCeeEEeEEEEeEEEecCCccEEEEeeeCCCC-CCCCCCCCceeEeeEEEEeEE
Q 047315 280 RGLVVRDSTMTGTMNGVRIKTWANSPGSSAATNMTFENIIMNNVSNPIIIDQAYCPFT-SCPTKPPSRVKLSDIYFKNIR 358 (417)
Q Consensus 280 ~ni~i~n~~~~~~~~gi~i~~~~~~~~g~~i~ni~~~ni~~~~~~~~i~i~~~~~~~~-~~~~~~~~~~~v~nI~~~ni~ 358 (417)
+||+|+||+|.++.+|++||+|.++ +|+ ++||+|+||+|+++++||.|++.|+... .|. ..++.+.++||+|+||+
T Consensus 269 ~nV~v~n~~i~~t~~GirIKt~~G~-~G~-v~nItf~nI~m~~v~~pI~I~q~Y~~~~~~~~-~~~s~v~Isdi~~~ni~ 345 (409)
T PLN03010 269 SDVHVTHCTFNQTTNGARIKTWQGG-QGY-ARNISFENITLINTKNPIIIDQQYIDKGKLDA-TKDSAVAISNVKYVGFR 345 (409)
T ss_pred EEEEEEeeEEeCCCcceEEEEecCC-CEE-EEEeEEEeEEEecCCccEEEEeeccCCCCCCC-CCCCceEEEeEEEEeeE
Confidence 9999999999999999999999986 688 9999999999999999999999998743 354 45788899999999999
Q ss_pred EEecCCceEEEeecCCCceeeEEEEeEEEEeCCCCCCCCeeeecceeeeeceecCCCCC
Q 047315 359 GTSSSAVAVALECSKGIPCQNIYLENVHLDLSSGEKQPTSSCKNVEAKYIGTQVPPPCA 417 (417)
Q Consensus 359 ~~~~~~~~~~i~~~~~~~~~~i~~~nv~i~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~ 417 (417)
++.....++.+.|++..||+||+|+||+++..++ .++.+.|.||++...+.+.||+|.
T Consensus 346 GT~~~~~~i~l~Cs~~~pC~ni~~~~v~l~~~~g-~~~~~~C~nv~g~~~~~~~~~~C~ 403 (409)
T PLN03010 346 GTTSNENAITLKCSAITHCKDVVMDDIDVTMENG-EKPKVECQNVEGESSDTDLMRDCF 403 (409)
T ss_pred EEeCCCccEEEEeCCCCCEeceEEEEEEEEecCC-CccceEeeCccccccCCCCCCccc
Confidence 9987788999999999999999999999998875 457899999999999999999994
No 6
>PLN03003 Probable polygalacturonase At3g15720
Probab=100.00 E-value=1.2e-73 Score=561.44 Aligned_cols=360 Identities=38% Similarity=0.698 Sum_probs=326.8
Q ss_pred eeEEeeeCCccCCCCcccHHHHHHHHHHHhhcCCCeEEEecCC-eeeEeeeEEecCccCcc-ceEEeEecEEEeecCccc
Q 047315 44 LLVNVKDFGARADGRTDDSKAFEAAWKEACETTGAVTLLVPHG-TYLIGPIKFAGPCKNVS-NITVQMKGYLIASTNLSE 121 (417)
Q Consensus 44 ~~~nv~d~GA~gdg~tDdt~aiq~Al~~a~~~~ggg~V~ip~G-tY~~~~l~l~~~~~~~s-~~~l~~~G~l~~~~~~~~ 121 (417)
.++||++|||+|||.+|||+|||+|+++||+..+|++|+||+| +|++++|.|++++| + .++++++|+++++.. ..
T Consensus 22 ~~fnV~~yGA~gDG~tDdT~Af~~Aw~aaC~~~ggg~v~VP~G~~yl~~pl~l~gpck--~~~~~~~i~G~i~ap~~-~~ 98 (456)
T PLN03003 22 NALDVTQFGAVGDGVTDDSQAFLKAWEAVCSGTGDGQFVVPAGMTFMLQPLKFQGSCK--STPVFVQMLGKLVAPSK-GN 98 (456)
T ss_pred eEEehhhcCCCCCCCcccHHHHHHHHHHhhhccCCCEEEECCCceEEeeeeEeCCCcc--CcceeeccCceEecCcc-cc
Confidence 4899999999999999999999999998898888999999999 58999999998877 4 488888999988653 45
Q ss_pred ccC-CCCeEEEcCceeeEEecCeEEcCCCcccccCCCCCCCCCCCCCcceEEEEeecceEEEeeEEecCCcceEEEecee
Q 047315 122 YRF-GAGWVEFGGVEGLTLTGGGTFDGRGAKAWPYNGCPTHFNCKLLPTNVKFVAMKKTIVRRITSVNSKSFHIALVECK 200 (417)
Q Consensus 122 ~~~-~~~~i~~~~~~nv~I~G~G~idg~g~~~~~~~~~~~~~~~~~~~~~i~~~~~~nv~I~~v~i~n~~~~~i~~~~~~ 200 (417)
|.. ...||.+.+.++++|+|.|+|||+|+.||... ..||+++.|.+|+|++|++++++|+|.|++++..|+
T Consensus 99 w~~~~~~wI~f~~~~~i~I~G~GtIDGqG~~wW~~~--------~~rP~~l~f~~~~nv~I~gitl~NSp~w~i~i~~c~ 170 (456)
T PLN03003 99 WKGDKDQWILFTDIEGLVIEGDGEINGQGSSWWEHK--------GSRPTALKFRSCNNLRLSGLTHLDSPMAHIHISECN 170 (456)
T ss_pred ccCCCcceEEEEcccceEEeccceEeCCchhhhhcc--------cCCceEEEEEecCCcEEeCeEEecCCcEEEEEeccc
Confidence 643 35799999999999999999999999999742 357999999999999999999999999999999999
Q ss_pred cEEEEeEEEECCCCCCCCCeEEeecceeEEEEeeEEecCCceEEecCCceeEEEEeeEEcCCceEEEcccccCCCCCcEE
Q 047315 201 NFRGSKIKISAPANSPNTDGIHIERSSSVHVSRSHIGTGDDCISVGQGNSEVTIASITCGPGHGISVGSLGRYPNEGDVR 280 (417)
Q Consensus 201 ~v~i~n~~i~~~~~~~~~DGi~~~~s~nv~I~n~~i~~gdD~i~i~s~s~nv~i~n~~~~~~~gi~igs~~~~~~~~~v~ 280 (417)
++++++++|.++.+++|+||||+.+|+||+|+||.|.++||||+++++++||+|+||+|.++||++|||+++++..+.|+
T Consensus 171 nV~i~~l~I~ap~~spNTDGIDi~~S~nV~I~n~~I~tGDDCIaiksgs~NI~I~n~~c~~GHGISIGSlg~~g~~~~V~ 250 (456)
T PLN03003 171 YVTISSLRINAPESSPNTDGIDVGASSNVVIQDCIIATGDDCIAINSGTSNIHISGIDCGPGHGISIGSLGKDGETATVE 250 (456)
T ss_pred cEEEEEEEEeCCCCCCCCCcEeecCcceEEEEecEEecCCCeEEeCCCCccEEEEeeEEECCCCeEEeeccCCCCcceEE
Confidence 99999999999988899999999999999999999999999999999999999999999999999999998876567899
Q ss_pred EEEEEeeEEecCceEEEEEEecCCCCCeeEEeEEEEeEEEecCCccEEEEeeeCCCC--C-CCCCCCCceeEeeEEEEeE
Q 047315 281 GLVVRDSTMTGTMNGVRIKTWANSPGSSAATNMTFENIIMNNVSNPIIIDQAYCPFT--S-CPTKPPSRVKLSDIYFKNI 357 (417)
Q Consensus 281 ni~i~n~~~~~~~~gi~i~~~~~~~~g~~i~ni~~~ni~~~~~~~~i~i~~~~~~~~--~-~~~~~~~~~~v~nI~~~ni 357 (417)
||+|+||++.++.+|++||+|.++ +|+ ++||+|+||+++++.+||.|+++|++.. . |. ..++.+.++||+|+||
T Consensus 251 NV~v~n~~~~~T~nGvRIKT~~Gg-~G~-v~nItf~nI~m~nV~~pI~Idq~Y~~~~~~~~~~-~~~s~v~IsnI~f~NI 327 (456)
T PLN03003 251 NVCVQNCNFRGTMNGARIKTWQGG-SGY-ARMITFNGITLDNVENPIIIDQFYNGGDSDNAKD-RKSSAVEVSKVVFSNF 327 (456)
T ss_pred EEEEEeeEEECCCcEEEEEEeCCC-CeE-EEEEEEEeEEecCccceEEEEcccCCCCCCCccc-CCCCCcEEEeEEEEeE
Confidence 999999999999999999999987 688 9999999999999999999999997533 2 32 3456789999999999
Q ss_pred EEEecCCceEEEeecCCCceeeEEEEeEEEEeCCC--CCCCCeeeecceeeeeceecCCCCC
Q 047315 358 RGTSSSAVAVALECSKGIPCQNIYLENVHLDLSSG--EKQPTSSCKNVEAKYIGTQVPPPCA 417 (417)
Q Consensus 358 ~~~~~~~~~~~i~~~~~~~~~~i~~~nv~i~~~~~--~~~~~~~c~~~~~~~~~~~~~~~~~ 417 (417)
+++.....++.+.|++..||+||+|+||+++.... +..+.+.|.||++.+.+..+||||.
T Consensus 328 ~GTs~~~~ai~l~Cs~~~PC~nI~l~ni~l~~~~~g~~~~~~~~C~Nv~G~~~~~~~~~~C~ 389 (456)
T PLN03003 328 IGTSKSEYGVDFRCSERVPCTEIFLRDMKIETASSGSGQVAQGQCLNVRGASTIAVPGLECL 389 (456)
T ss_pred EEEeCccceEEEEeCCCCCeeeEEEEEEEEEecCCCCCCccCcEEeccccccCceECCCCcc
Confidence 99987778899999999999999999999998732 2457899999999999999999994
No 7
>PF00295 Glyco_hydro_28: Glycosyl hydrolases family 28; InterPro: IPR000743 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 28 GH28 from CAZY comprises enzymes with several known activities; polygalacturonase (3.2.1.15 from EC); exo-polygalacturonase (3.2.1.67 from EC); exo-polygalacturonase (3.2.1.82 from EC); rhamnogalacturonase (EC not defined). Polygalacturonase (PG) (pectinase) [, ] catalyses the random hydrolysis of 1,4-alpha-D-galactosiduronic linkages in pectate and other galacturonans. In fruit, polygalacturonase plays an important role in cell wall metabolism during ripening. In plant bacterial pathogens such as Erwinia carotovora or Ralstonia solanacearum (Pseudomonas solanacearum) and fungal pathogens such as Aspergillus niger, polygalacturonase is involved in maceration and soft-rotting of plant tissue. Exo-poly-alpha-D-galacturonosidase (3.2.1.82 from EC) (exoPG) [] hydrolyses peptic acid from the non-reducing end, releasing digalacturonate. PG and exoPG share a few regions of sequence similarity, and belong to family 28 of the glycosyl hydrolases.; GO: 0004650 polygalacturonase activity, 0005975 carbohydrate metabolic process; PDB: 1KCC_A 1KCD_A 1K5C_A 1HG8_A 2IQ7_A 2UVF_B 1RMG_A 1CZF_B 3JUR_C 1BHE_A ....
Probab=100.00 E-value=1.5e-56 Score=433.45 Aligned_cols=323 Identities=39% Similarity=0.679 Sum_probs=279.7
Q ss_pred hhcCCCeEEEecCCeeeEeeeEEecCccCccceEEeEecEEEeecCcccccCCCCeEEEcCceeeEEecCeEEcCCCccc
Q 047315 73 CETTGAVTLLVPHGTYLIGPIKFAGPCKNVSNITVQMKGYLIASTNLSEYRFGAGWVEFGGVEGLTLTGGGTFDGRGAKA 152 (417)
Q Consensus 73 ~~~~ggg~V~ip~GtY~~~~l~l~~~~~~~s~~~l~~~G~l~~~~~~~~~~~~~~~i~~~~~~nv~I~G~G~idg~g~~~ 152 (417)
|++.++++|+||+|+|+++++.|++.+. +++++.++|++.++.....++. ..||.+.+++|+.|+|.|+|||+|+.|
T Consensus 1 C~~~~~~~v~vP~g~~~~~~~~l~~~l~--~~~~~~l~G~~~~~~~~~~~~~-~~~i~~~~~~ni~i~G~G~IDG~G~~w 77 (326)
T PF00295_consen 1 CSSIGGGTVVVPAGTYLLGPLFLKSTLH--SDVGLTLDGTINFSYDNWEGPN-SALIYAENAENITITGKGTIDGNGQAW 77 (326)
T ss_dssp HSEEEEESEEESTSTEEEEETSEETECE--TTCEEEEESEEEEG-EESTSE--SEEEEEESEEEEECTTSSEEE--GGGT
T ss_pred CcCCcCCEEEECCCCeEEceeEEEcccC--CCeEEEEEEEEEeCCCcccCCc-cEEEEEEceEEEEecCCceEcCchhhh
Confidence 5666788999999999999988875444 7899999999998855555554 789999999999999999999999999
Q ss_pred ccCCCCCCCCCCCCCcceEEEEeecceEEEeeEEecCCcceEEEeceecEEEEeEEEECCCCCCCCCeEEeecceeEEEE
Q 047315 153 WPYNGCPTHFNCKLLPTNVKFVAMKKTIVRRITSVNSKSFHIALVECKNFRGSKIKISAPANSPNTDGIHIERSSSVHVS 232 (417)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~i~~~~~~nv~I~~v~i~n~~~~~i~~~~~~~v~i~n~~i~~~~~~~~~DGi~~~~s~nv~I~ 232 (417)
|..... .......||+++.+.+|++++|++++++++|.|++++..|+++++++++|.++...+|+|||++.+|+||+|+
T Consensus 78 ~~~~~~-~~~~~~~rp~~i~~~~~~~~~i~~i~~~nsp~w~~~~~~~~nv~i~~i~I~~~~~~~NtDGid~~~s~nv~I~ 156 (326)
T PF00295_consen 78 WDGSGD-ANNNGQRRPRLIRFNNCKNVTIEGITIRNSPFWHIHINDCDNVTISNITINNPANSPNTDGIDIDSSKNVTIE 156 (326)
T ss_dssp CSSCTT-HCCSSSSSSESEEEEEEEEEEEESEEEES-SSESEEEESEEEEEEESEEEEEGGGCTS--SEEEESEEEEEEE
T ss_pred hccccc-cccccccccceeeeeeecceEEEeeEecCCCeeEEEEEccCCeEEcceEEEecCCCCCcceEEEEeeeEEEEE
Confidence 985411 1245567899999999999999999999999999999999999999999999877789999999999999999
Q ss_pred eeEEecCCceEEecCCceeEEEEeeEEcCCceEEEcccccCCCCCcEEEEEEEeeEEecCceEEEEEEecCCCCCeeEEe
Q 047315 233 RSHIGTGDDCISVGQGNSEVTIASITCGPGHGISVGSLGRYPNEGDVRGLVVRDSTMTGTMNGVRIKTWANSPGSSAATN 312 (417)
Q Consensus 233 n~~i~~gdD~i~i~s~s~nv~i~n~~~~~~~gi~igs~~~~~~~~~v~ni~i~n~~~~~~~~gi~i~~~~~~~~g~~i~n 312 (417)
||++.++||||+++++..||+|+||+|..+||++|||++..+....++||+|+||++.++.+|++||++++. +|. ++|
T Consensus 157 n~~i~~gDD~Iaiks~~~ni~v~n~~~~~ghGisiGS~~~~~~~~~i~nV~~~n~~i~~t~~gi~iKt~~~~-~G~-v~n 234 (326)
T PF00295_consen 157 NCFIDNGDDCIAIKSGSGNILVENCTCSGGHGISIGSEGSGGSQNDIRNVTFENCTIINTDNGIRIKTWPGG-GGY-VSN 234 (326)
T ss_dssp SEEEESSSESEEESSEECEEEEESEEEESSSEEEEEEESSSSE--EEEEEEEEEEEEESESEEEEEEEETTT-SEE-EEE
T ss_pred EeecccccCcccccccccceEEEeEEEeccccceeeeccCCccccEEEeEEEEEEEeeccceEEEEEEeccc-ceE-Eec
Confidence 999999999999999888999999999999999999997543334799999999999999999999999865 688 999
Q ss_pred EEEEeEEEecCCccEEEEeeeCCCCCCCCCCCCceeEeeEEEEeEEEEecCCceEEEeecCCCceeeEEEEeEEEEeCCC
Q 047315 313 MTFENIIMNNVSNPIIIDQAYCPFTSCPTKPPSRVKLSDIYFKNIRGTSSSAVAVALECSKGIPCQNIYLENVHLDLSSG 392 (417)
Q Consensus 313 i~~~ni~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~v~nI~~~ni~~~~~~~~~~~i~~~~~~~~~~i~~~nv~i~~~~~ 392 (417)
|+|+||+++++.+|+.|++.|.....|. .++..+.++||+|+||+++.....++.+.|.+..||+||+|+||+|+. +
T Consensus 235 I~f~ni~~~~v~~pi~i~~~y~~~~~~~-~~~~~~~i~nI~~~nitg~~~~~~~i~i~~~~~~~~~ni~f~nv~i~~-g- 311 (326)
T PF00295_consen 235 ITFENITMENVKYPIFIDQDYRDGGPCG-KPPSGVSISNITFRNITGTSAGSSAISIDCSPGSPCSNITFENVNITG-G- 311 (326)
T ss_dssp EEEEEEEEEEESEEEEEEEEECTTEESS-CSSSSSEEEEEEEEEEEEEESTSEEEEEE-BTTSSEEEEEEEEEEEES-S-
T ss_pred eEEEEEEecCCceEEEEEeccccccccC-cccCCceEEEEEEEeeEEEeccceEEEEEECCcCcEEeEEEEeEEEEc-C-
Confidence 9999999999999999999998865555 335667999999999999997667899999999999999999999998 2
Q ss_pred CCCCCeeeecceee
Q 047315 393 EKQPTSSCKNVEAK 406 (417)
Q Consensus 393 ~~~~~~~c~~~~~~ 406 (417)
...+.|+|++..
T Consensus 312 --~~~~~c~nv~~~ 323 (326)
T PF00295_consen 312 --KKPAQCKNVPSG 323 (326)
T ss_dssp --BSESEEBSCCTT
T ss_pred --CcCeEEECCCCC
Confidence 688999999764
No 8
>COG5434 PGU1 Endopygalactorunase [Cell envelope biogenesis, outer membrane]
Probab=100.00 E-value=1.4e-41 Score=338.72 Aligned_cols=277 Identities=31% Similarity=0.505 Sum_probs=235.5
Q ss_pred ccCceeEEeeeCCccCCCCcccHHHHHHHHHHHhhcCCCeEEEecCCeeeEeeeEEecCccCccceEEeEe-c-EEEeec
Q 047315 40 ETSSLLVNVKDFGARADGRTDDSKAFEAAWKEACETTGAVTLLVPHGTYLIGPIKFAGPCKNVSNITVQMK-G-YLIAST 117 (417)
Q Consensus 40 ~~~~~~~nv~d~GA~gdg~tDdt~aiq~Al~~a~~~~ggg~V~ip~GtY~~~~l~l~~~~~~~s~~~l~~~-G-~l~~~~ 117 (417)
....+.++|.+|||+|||.+|+++|||+|| ++|++.+|++|+||+|+|+.++|.|+ |+++|+++ | +|+.+.
T Consensus 77 ~~~~t~~sv~~~ga~gDG~t~~~~aiq~AI-~~ca~a~Gg~V~lPaGtylsg~l~LK------S~~~L~l~egatl~~~~ 149 (542)
T COG5434 77 AATDTAFSVSDDGAVGDGATDNTAAIQAAI-DACASAGGGTVLLPAGTYLSGPLFLK------SNVTLHLAEGATLLASS 149 (542)
T ss_pred ccccceeeeccccccccCCccCHHHHHHHH-HhhhhhcCceEEECCceeEeeeEEEe------cccEEEecCCceeeCCC
Confidence 345569999999999999999999999997 56887899999999999999999999 99999996 7 999999
Q ss_pred CcccccC--------CC----------CeEE-------------EcCceeeE-EecCeEEcCCCc---c-cccCCCCCCC
Q 047315 118 NLSEYRF--------GA----------GWVE-------------FGGVEGLT-LTGGGTFDGRGA---K-AWPYNGCPTH 161 (417)
Q Consensus 118 ~~~~~~~--------~~----------~~i~-------------~~~~~nv~-I~G~G~idg~g~---~-~~~~~~~~~~ 161 (417)
++..|+. .. .++. ....+|.. |.|.++++|+++ . ||........
T Consensus 150 ~p~~y~~~~~~~~~~~~~~~~a~~~~~~~~~~~g~~d~~~~~~~~~~~~n~~~i~g~~~i~g~~~~~g~~~~~~~g~~~~ 229 (542)
T COG5434 150 NPKDYPSFTSRFNGNSGPYVYATDSDNAMISGEGLADGKADLLIAGNSSNRKEIWGKGTIDGNGYKRGDKWFSGLGAVET 229 (542)
T ss_pred ChhhccccccccccccCcceeeecccCceeeeecccccCcccceeccCCceEEEeccceecCccccchhhhhhcccchhh
Confidence 9999983 11 1221 22234444 888888888641 2 6654321011
Q ss_pred CC--CCCCcceEEEEeecceEEEeeEEecCCcceEEEeceecEEEEeEEEECCCCCCCCCeEEeecceeEEEEeeEEecC
Q 047315 162 FN--CKLLPTNVKFVAMKKTIVRRITSVNSKSFHIALVECKNFRGSKIKISAPANSPNTDGIHIERSSSVHVSRSHIGTG 239 (417)
Q Consensus 162 ~~--~~~~~~~i~~~~~~nv~I~~v~i~n~~~~~i~~~~~~~v~i~n~~i~~~~~~~~~DGi~~~~s~nv~I~n~~i~~g 239 (417)
.- ...+|..+.+..|.||++++++|.+++.|.+|+..|+|++++|++|.+.... |+||+++.+|+||+|++|+|.++
T Consensus 230 ~i~~~~~rp~~~~l~~c~NV~~~g~~i~ns~~~~~h~~~~~nl~~~nl~I~~~~~~-NtDG~d~~sc~NvlI~~~~fdtg 308 (542)
T COG5434 230 RIGGKGVRPRTVVLKGCRNVLLEGLNIKNSPLWTVHPVDCDNLTFRNLTIDANRFD-NTDGFDPGSCSNVLIEGCRFDTG 308 (542)
T ss_pred cccccCcCCceEEEeccceEEEeeeEecCCCcEEEeeecccCceecceEEECCCCC-CCCccccccceeEEEeccEEecC
Confidence 11 1258999999999999999999999999999999999999999999997654 99999999999999999999999
Q ss_pred CceEEecCC-----------ceeEEEEeeEEcCCce-EEEcccccCCCCCcEEEEEEEeeEEecCceEEEEEEecCCCCC
Q 047315 240 DDCISVGQG-----------NSEVTIASITCGPGHG-ISVGSLGRYPNEGDVRGLVVRDSTMTGTMNGVRIKTWANSPGS 307 (417)
Q Consensus 240 dD~i~i~s~-----------s~nv~i~n~~~~~~~g-i~igs~~~~~~~~~v~ni~i~n~~~~~~~~gi~i~~~~~~~~g 307 (417)
||||+++++ ++++.|+||+|..+|| +.+||+ +.++++||++|||.|.++.+|++||+..++ +|
T Consensus 309 DD~I~iksg~~~~~~~~~~~~~~i~i~~c~~~~ghG~~v~Gse----~~ggv~ni~ved~~~~~~d~GLRikt~~~~-gG 383 (542)
T COG5434 309 DDCIAIKSGAGLDGKKGYGPSRNIVIRNCYFSSGHGGLVLGSE----MGGGVQNITVEDCVMDNTDRGLRIKTNDGR-GG 383 (542)
T ss_pred CceEEeecccCCcccccccccccEEEecceecccccceEeeee----cCCceeEEEEEeeeeccCcceeeeeeeccc-ce
Confidence 999999995 5899999999999996 999999 779999999999999999999999999987 57
Q ss_pred eeEEeEEEEeEEEecCCccEEEE
Q 047315 308 SAATNMTFENIIMNNVSNPIIID 330 (417)
Q Consensus 308 ~~i~ni~~~ni~~~~~~~~i~i~ 330 (417)
. ++||+|+++++.++..+..|.
T Consensus 384 ~-v~nI~~~~~~~~nv~t~~~i~ 405 (542)
T COG5434 384 G-VRNIVFEDNKMRNVKTKLSIN 405 (542)
T ss_pred e-EEEEEEecccccCcccceeee
Confidence 7 999999999999986555454
No 9
>TIGR03808 RR_plus_rpt_1 twin-arg-translocated uncharacterized repeat protein. Members of this protein family have a Sec-independent twin-arginine tranlocation (TAT) signal sequence, which enables tranfer of proteins folded around prosthetic groups to cross the plasma membrane. These proteins have four copies of a repeat of about 23 amino acids that resembles the beta-helix repeat. Beta-helix refers to a structural motif in which successive beta strands wind around to stack parallel in a right-handed helix, as in AlgG and related enzymes of carbohydrate metabolism. The twin-arginine motif suggests that members of this protein family bind some unknown cofactor.
Probab=99.95 E-value=9.3e-27 Score=225.25 Aligned_cols=250 Identities=19% Similarity=0.248 Sum_probs=194.8
Q ss_pred cccCceeEEeeeCCccCCCCcccHHHHHHHHHHHhhcCCCeEEEecCCeeeEeeeEEecCccCccceEEeEe-cEEEeec
Q 047315 39 KETSSLLVNVKDFGARADGRTDDSKAFEAAWKEACETTGAVTLLVPHGTYLIGPIKFAGPCKNVSNITVQMK-GYLIAST 117 (417)
Q Consensus 39 ~~~~~~~~nv~d~GA~gdg~tDdt~aiq~Al~~a~~~~ggg~V~ip~GtY~~~~l~l~~~~~~~s~~~l~~~-G~l~~~~ 117 (417)
|.+|.+.+++++|||++||.+|+|+|||+||+++ + .++++|.+|+|+|+.+++.|+ ++++|.++ |.....
T Consensus 31 p~~p~r~~dv~~fGa~~dG~td~T~ALQaAIdaA-a-~gG~tV~Lp~G~Y~~G~L~L~------spltL~G~~gAt~~v- 101 (455)
T TIGR03808 31 PLTSTLGRDATQYGVRPNSPDDQTRALQRAIDEA-A-RAQTPLALPPGVYRTGPLRLP------SGAQLIGVRGATRLV- 101 (455)
T ss_pred CCCCccCCCHHHcCcCCCCcchHHHHHHHHHHHh-h-cCCCEEEECCCceecccEEEC------CCcEEEecCCcEEEE-
Confidence 4456677999999999999999999999998754 3 356899999999999999999 99999998 432111
Q ss_pred CcccccCCCCeEEEcCceeeEEecCeEEcCCCcccccCCCCCCCCCCCCCcceEEEEeecceEEEeeEEecCCcceEEEe
Q 047315 118 NLSEYRFGAGWVEFGGVEGLTLTGGGTFDGRGAKAWPYNGCPTHFNCKLLPTNVKFVAMKKTIVRRITSVNSKSFHIALV 197 (417)
Q Consensus 118 ~~~~~~~~~~~i~~~~~~nv~I~G~G~idg~g~~~~~~~~~~~~~~~~~~~~~i~~~~~~nv~I~~v~i~n~~~~~i~~~ 197 (417)
+.....++...++++|+|+|. +|+++|..|. .++.+|.+..|++++|+++++.++..|++.+.
T Consensus 102 ----IdG~~~lIiai~A~nVTIsGL-tIdGsG~dl~------------~rdAgI~v~~a~~v~Iedn~L~gsg~FGI~L~ 164 (455)
T TIGR03808 102 ----FTGGPSLLSSEGADGIGLSGL-TLDGGGIPLP------------QRRGLIHCQGGRDVRITDCEITGSGGNGIWLE 164 (455)
T ss_pred ----EcCCceEEEEecCCCeEEEee-EEEeCCCccc------------CCCCEEEEccCCceEEEeeEEEcCCcceEEEE
Confidence 111246777778999999995 9999986543 35789999999999999999999989999999
Q ss_pred cee----------------------cEEEEeEEEECCCC--------------------------------CCCCCeEEe
Q 047315 198 ECK----------------------NFRGSKIKISAPAN--------------------------------SPNTDGIHI 223 (417)
Q Consensus 198 ~~~----------------------~v~i~n~~i~~~~~--------------------------------~~~~DGi~~ 223 (417)
.|+ ++.|++.+|....+ ....+||++
T Consensus 165 ~~~~~I~~N~I~g~~~~~I~lw~S~g~~V~~N~I~g~RD~gi~i~r~~~~~dg~~v~~n~i~~i~a~~gg~~~~GNGI~~ 244 (455)
T TIGR03808 165 TVSGDISGNTITQIAVTAIVSFDALGLIVARNTIIGANDNGIEILRSAIGDDGTIVTDNRIEDIKAGPGGSGQYGNAINA 244 (455)
T ss_pred cCcceEecceEeccccceEEEeccCCCEEECCEEEccCCCCeEEEEeeecCCcceeeccccccccccCCCcCCccccEEE
Confidence 999 88888888876444 234678999
Q ss_pred ecceeEEEEeeEEecCC-ceEEecCCceeEEEEeeEEcCCceEEEcccccCCCCCcEEEEEEEeeEEecCceEEEEEEec
Q 047315 224 ERSSSVHVSRSHIGTGD-DCISVGQGNSEVTIASITCGPGHGISVGSLGRYPNEGDVRGLVVRDSTMTGTMNGVRIKTWA 302 (417)
Q Consensus 224 ~~s~nv~I~n~~i~~gd-D~i~i~s~s~nv~i~n~~~~~~~gi~igs~~~~~~~~~v~ni~i~n~~~~~~~~gi~i~~~~ 302 (417)
+.+.+++|++++|+.++ |+|.+.+ ++|++|+++.|..-.=.++.++ ...+.-.|+|+++.+...|+.+....
T Consensus 245 ~~a~~v~V~gN~I~~~r~dgI~~ns-ss~~~i~~N~~~~~R~~alhym------fs~~g~~i~~N~~~g~~~G~av~nf~ 317 (455)
T TIGR03808 245 FRAGNVIVRGNRIRNCDYSAVRGNS-ASNIQITGNSVSDVREVALYSE------FAFEGAVIANNTVDGAAVGVSVCNFN 317 (455)
T ss_pred EccCCeEEECCEEeccccceEEEEc-ccCcEEECcEeeeeeeeEEEEE------EeCCCcEEeccEEecCcceEEEEeec
Confidence 99999999999999988 9998887 7899999988874332244333 11222567888888888898887654
Q ss_pred CC-CCCeeEEeEEEEeEEEec
Q 047315 303 NS-PGSSAATNMTFENIIMNN 322 (417)
Q Consensus 303 ~~-~~g~~i~ni~~~ni~~~~ 322 (417)
.. .... +++-.++|++-+.
T Consensus 318 ~ggr~~~-~~gn~irn~~~~~ 337 (455)
T TIGR03808 318 EGGRLAV-VQGNIIRNLIPKR 337 (455)
T ss_pred CCceEEE-EecceeeccccCC
Confidence 32 2345 7777788887765
No 10
>PF12708 Pectate_lyase_3: Pectate lyase superfamily protein; PDB: 3EQN_A 3EQO_A 2PYG_A 2PYH_A 3SUC_A 3GQ7_A 3GQ9_A 3GQA_A 3GQ8_A 2VBE_A ....
Probab=99.90 E-value=3.1e-22 Score=184.22 Aligned_cols=213 Identities=25% Similarity=0.395 Sum_probs=132.1
Q ss_pred eEEeeeCCccCCCCcccHHHHHHHHHHHhhcCCCeEEEecCCeeeEe-eeEEecCccCccceEEeEec---EEEe-ecCc
Q 047315 45 LVNVKDFGARADGRTDDSKAFEAAWKEACETTGAVTLLVPHGTYLIG-PIKFAGPCKNVSNITVQMKG---YLIA-STNL 119 (417)
Q Consensus 45 ~~nv~d~GA~gdg~tDdt~aiq~Al~~a~~~~ggg~V~ip~GtY~~~-~l~l~~~~~~~s~~~l~~~G---~l~~-~~~~ 119 (417)
.+||+||||+|||.+|||+|||+||++ ++..++++|+||||+|+++ ++.++ ++++|+++| +++. ....
T Consensus 1 ~inv~~fGa~~dG~tDdt~Aiq~Ai~~-~~~~~g~~v~~P~G~Y~i~~~l~~~------s~v~l~G~g~~~~~~~~~~~~ 73 (225)
T PF12708_consen 1 FINVTDFGAKGDGVTDDTAAIQAAIDA-AAAAGGGVVYFPPGTYRISGTLIIP------SNVTLRGAGGNSTILFLSGSG 73 (225)
T ss_dssp EEEGGGGT--TEEEEE-HHHHHHHHHH-HCSTTSEEEEE-SEEEEESS-EEE-------TTEEEEESSTTTEEEEECTTT
T ss_pred CcceeecCcCCCCChhHHHHHHHhhhh-cccCCCeEEEEcCcEEEEeCCeEcC------CCeEEEccCCCeeEEEecCcc
Confidence 379999999999999999999999843 4557899999999999999 59998 999999985 3443 2222
Q ss_pred ccccCCCCeEEEcC-cee--eEEecCeEEcCCCcccccCCCCCCCCCCCCCcceEEEEeecceEEEeeEEecCCcceEEE
Q 047315 120 SEYRFGAGWVEFGG-VEG--LTLTGGGTFDGRGAKAWPYNGCPTHFNCKLLPTNVKFVAMKKTIVRRITSVNSKSFHIAL 196 (417)
Q Consensus 120 ~~~~~~~~~i~~~~-~~n--v~I~G~G~idg~g~~~~~~~~~~~~~~~~~~~~~i~~~~~~nv~I~~v~i~n~~~~~i~~ 196 (417)
..+........+.. ..+ +.|++ -++++.....-. ....+.+..+.++.|+++++.+....++.+
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~i~n-l~i~~~~~~~~~------------~~~~i~~~~~~~~~i~nv~~~~~~~~~i~~ 140 (225)
T PF12708_consen 74 DSFSVVPGIGVFDSGNSNIGIQIRN-LTIDGNGIDPNN------------NNNGIRFNSSQNVSISNVRIENSGGDGIYF 140 (225)
T ss_dssp STSCCEEEEEECCSCSCCEEEEEEE-EEEEETCGCE-S------------CEEEEEETTEEEEEEEEEEEES-SS-SEEE
T ss_pred cccccccceeeeecCCCCceEEEEe-eEEEcccccCCC------------CceEEEEEeCCeEEEEeEEEEccCccEEEE
Confidence 22221011111111 111 22444 444444321100 135677788889999999998887778877
Q ss_pred eceecEEEEeEEEECCCCCCCCCeEEeec-ceeEEEEeeEEecCCceEEecCCceeEEEEeeEEcC-C-ceEEEcccccC
Q 047315 197 VECKNFRGSKIKISAPANSPNTDGIHIER-SSSVHVSRSHIGTGDDCISVGQGNSEVTIASITCGP-G-HGISVGSLGRY 273 (417)
Q Consensus 197 ~~~~~v~i~n~~i~~~~~~~~~DGi~~~~-s~nv~I~n~~i~~gdD~i~i~s~s~nv~i~n~~~~~-~-~gi~igs~~~~ 273 (417)
..++...+.+..... ++.+.. +.++.+.+|.+..+++++.. +.++++++||.+.. . .|+.+...
T Consensus 141 ~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~g~~~--~~~~~~i~n~~~~~~~~~gi~i~~~--- 207 (225)
T PF12708_consen 141 NTGTDYRIIGSTHVS--------GIFIDNGSNNVIVNNCIFNGGDNGIIL--GNNNITISNNTFEGNCGNGINIEGG--- 207 (225)
T ss_dssp ECCEECEEECCEEEE--------EEEEESCEEEEEEECEEEESSSCSEEC--EEEEEEEECEEEESSSSESEEEEEC---
T ss_pred EccccCcEeecccce--------eeeeccceeEEEECCccccCCCceeEe--ecceEEEEeEEECCccceeEEEECC---
Confidence 765555544433321 344433 35677788888888877433 24788888888875 2 36766332
Q ss_pred CCCCcEEEEEEEeeEEecCceEE
Q 047315 274 PNEGDVRGLVVRDSTMTGTMNGV 296 (417)
Q Consensus 274 ~~~~~v~ni~i~n~~~~~~~~gi 296 (417)
.+++|+|++++++..||
T Consensus 208 ------~~~~i~n~~i~~~~~g~ 224 (225)
T PF12708_consen 208 ------SNIIISNNTIENCDDGI 224 (225)
T ss_dssp ------SEEEEEEEEEESSSEEE
T ss_pred ------eEEEEEeEEEECCccCc
Confidence 13777788888777776
No 11
>PLN02793 Probable polygalacturonase
Probab=99.89 E-value=8e-21 Score=189.23 Aligned_cols=220 Identities=15% Similarity=0.248 Sum_probs=173.1
Q ss_pred cceEEeEecEEEeecCcccccC------------CCCeEEEcCceeeEEecCeEEcCCCcccccCCCCCCCCCCCCCcce
Q 047315 103 SNITVQMKGYLIASTNLSEYRF------------GAGWVEFGGVEGLTLTGGGTFDGRGAKAWPYNGCPTHFNCKLLPTN 170 (417)
Q Consensus 103 s~~~l~~~G~l~~~~~~~~~~~------------~~~~i~~~~~~nv~I~G~G~idg~g~~~~~~~~~~~~~~~~~~~~~ 170 (417)
++++|.+.|+|.+.. ...|.. .+.++.+.+++|++|+|.-+.+.. .| .
T Consensus 143 ~ni~ItG~G~IDG~G-~~ww~~~~~~~~~~~~~~rP~~i~f~~~~nv~v~gitl~nSp---~~----------------~ 202 (443)
T PLN02793 143 NHLTVEGGGTVNGMG-HEWWAQSCKINHTNPCRHAPTAITFHKCKDLRVENLNVIDSQ---QM----------------H 202 (443)
T ss_pred ceEEEEeceEEECCC-cccccccccccCCCCccCCceEEEEEeeccEEEECeEEEcCC---Ce----------------E
Confidence 789999988887642 233321 246899999999999995555442 23 4
Q ss_pred EEEEeecceEEEeeEEecC----CcceEEEeceecEEEEeEEEECCCCCCCCCeEEee-cceeEEEEeeEEecCCceEEe
Q 047315 171 VKFVAMKKTIVRRITSVNS----KSFHIALVECKNFRGSKIKISAPANSPNTDGIHIE-RSSSVHVSRSHIGTGDDCISV 245 (417)
Q Consensus 171 i~~~~~~nv~I~~v~i~n~----~~~~i~~~~~~~v~i~n~~i~~~~~~~~~DGi~~~-~s~nv~I~n~~i~~gdD~i~i 245 (417)
+++.+|+||+|++++|.++ ...||++..|+||.|+|++|.+ ..|+|.+. +|+||+|+||.+..++ ||++
T Consensus 203 i~~~~~~nv~i~~l~I~~p~~spNTDGIdi~~s~nV~I~n~~I~~-----gDDcIaik~~s~nI~I~n~~c~~Gh-GisI 276 (443)
T PLN02793 203 IAFTNCRRVTISGLKVIAPATSPNTDGIHISASRGVVIKDSIVRT-----GDDCISIVGNSSRIKIRNIACGPGH-GISI 276 (443)
T ss_pred EEEEccCcEEEEEEEEECCCCCCCCCcEeeeccceEEEEeCEEeC-----CCCeEEecCCcCCEEEEEeEEeCCc-cEEE
Confidence 8899999999999999874 2459999999999999999998 45789995 6999999999998886 7999
Q ss_pred cCC--------ceeEEEEeeEEcCC-ceEEEcccccCCCCCcEEEEEEEeeEEecCceEEEEEEecCC--------CCCe
Q 047315 246 GQG--------NSEVTIASITCGPG-HGISVGSLGRYPNEGDVRGLVVRDSTMTGTMNGVRIKTWANS--------PGSS 308 (417)
Q Consensus 246 ~s~--------s~nv~i~n~~~~~~-~gi~igs~~~~~~~~~v~ni~i~n~~~~~~~~gi~i~~~~~~--------~~g~ 308 (417)
+|- .+||+|+||++.+. .|++|++... ..+.++||+|+|++|.+..++|.|...... ....
T Consensus 277 GSlg~~~~~~~V~nV~v~n~~~~~t~~GirIKt~~g--~~G~v~nItf~ni~m~nv~~pI~I~q~Y~~~~~~~~~~ts~v 354 (443)
T PLN02793 277 GSLGKSNSWSEVRDITVDGAFLSNTDNGVRIKTWQG--GSGNASKITFQNIFMENVSNPIIIDQYYCDSRKPCANQTSAV 354 (443)
T ss_pred ecccCcCCCCcEEEEEEEccEEeCCCceEEEEEeCC--CCEEEEEEEEEeEEEecCCceEEEEeeecCCCCCCCCCCCCe
Confidence 882 48999999999987 5999998743 347899999999999999999999875421 1122
Q ss_pred eEEeEEEEeEEEecCC-ccEEEEeeeCCCCCCCCCCCCceeEeeEEEEeEEEEec
Q 047315 309 AATNMTFENIIMNNVS-NPIIIDQAYCPFTSCPTKPPSRVKLSDIYFKNIRGTSS 362 (417)
Q Consensus 309 ~i~ni~~~ni~~~~~~-~~i~i~~~~~~~~~~~~~~~~~~~v~nI~~~ni~~~~~ 362 (417)
.|+||+|+||+.+... .++.+. |. +..+++||+|+||+++..
T Consensus 355 ~I~nI~~~nI~Gt~~~~~ai~l~--------cs----~~~pc~ni~l~nI~l~~~ 397 (443)
T PLN02793 355 KVENISFVHIKGTSATEEAIKFA--------CS----DSSPCEGLYLEDVQLLSS 397 (443)
T ss_pred EEEeEEEEEEEEEEcccccEEEE--------eC----CCCCEeeEEEEeeEEEec
Confidence 3899999999987653 355554 22 233689999999999864
No 12
>PLN02188 polygalacturonase/glycoside hydrolase family protein
Probab=99.88 E-value=2.3e-20 Score=183.86 Aligned_cols=221 Identities=17% Similarity=0.263 Sum_probs=171.6
Q ss_pred cceEEeEecEEEeecCccccc-----------CCCCeEEEcCceeeEEecCeEEcCCCcccccCCCCCCCCCCCCCcceE
Q 047315 103 SNITVQMKGYLIASTNLSEYR-----------FGAGWVEFGGVEGLTLTGGGTFDGRGAKAWPYNGCPTHFNCKLLPTNV 171 (417)
Q Consensus 103 s~~~l~~~G~l~~~~~~~~~~-----------~~~~~i~~~~~~nv~I~G~G~idg~g~~~~~~~~~~~~~~~~~~~~~i 171 (417)
++++|.+.|+|.+... ..|+ ..+.++.+.+++|+.|+|.-+.+. +.| .+
T Consensus 122 ~ni~I~G~G~IDG~G~-~ww~~~~~~~~~~~~~rP~~i~f~~~~nv~i~gitl~nS---p~w----------------~i 181 (404)
T PLN02188 122 NGLTLTGGGTFDGQGA-AAWPFNKCPIRKDCKLLPTSVKFVNMNNTVVRGITSVNS---KFF----------------HI 181 (404)
T ss_pred eeEEEEeeEEEeCCCc-ccccccccccCCCCCcCceEEEEEeeeeEEEeCeEEEcC---CCe----------------EE
Confidence 6888888888887532 3442 124688999999999999333332 334 49
Q ss_pred EEEeecceEEEeeEEecCC----cceEEEeceecEEEEeEEEECCCCCCCCCeEEee-cceeEEEEeeEEecCCceEEec
Q 047315 172 KFVAMKKTIVRRITSVNSK----SFHIALVECKNFRGSKIKISAPANSPNTDGIHIE-RSSSVHVSRSHIGTGDDCISVG 246 (417)
Q Consensus 172 ~~~~~~nv~I~~v~i~n~~----~~~i~~~~~~~v~i~n~~i~~~~~~~~~DGi~~~-~s~nv~I~n~~i~~gdD~i~i~ 246 (417)
++..|+||+|++++|.++. ..||++..|++|.|+|++|.+ ..|+|.+. +++||+|+||.+..++ +|+++
T Consensus 182 ~~~~~~~v~i~~v~I~~~~~spNtDGidi~~s~nV~I~n~~I~~-----GDDcIaiksg~~nI~I~n~~c~~gh-GisiG 255 (404)
T PLN02188 182 ALVECRNFKGSGLKISAPSDSPNTDGIHIERSSGVYISDSRIGT-----GDDCISIGQGNSQVTITRIRCGPGH-GISVG 255 (404)
T ss_pred EEEccccEEEEEEEEeCCCCCCCCCcEeeeCcccEEEEeeEEeC-----CCcEEEEccCCccEEEEEEEEcCCC-cEEeC
Confidence 9999999999999998742 459999999999999999998 45789995 5789999999998775 79998
Q ss_pred C--------CceeEEEEeeEEcCC-ceEEEcccccCCCCCcEEEEEEEeeEEecCceEEEEEEecC---------CCCCe
Q 047315 247 Q--------GNSEVTIASITCGPG-HGISVGSLGRYPNEGDVRGLVVRDSTMTGTMNGVRIKTWAN---------SPGSS 308 (417)
Q Consensus 247 s--------~s~nv~i~n~~~~~~-~gi~igs~~~~~~~~~v~ni~i~n~~~~~~~~gi~i~~~~~---------~~~g~ 308 (417)
| +.+||+|+||++.++ +|++|++....+..+.++||+|+|++|.+...+|.|..... .....
T Consensus 256 SlG~~~~~~~V~nV~v~n~~~~~t~~GiriKt~~g~~~~G~v~nI~f~ni~m~~v~~pI~i~~~Y~~~~~~~~~~~s~v~ 335 (404)
T PLN02188 256 SLGRYPNEGDVTGLVVRDCTFTGTTNGIRIKTWANSPGKSAATNMTFENIVMNNVTNPIIIDQKYCPFYSCESKYPSGVT 335 (404)
T ss_pred CCCCCCcCCcEEEEEEEeeEEECCCcEEEEEEecCCCCceEEEEEEEEeEEecCccceEEEEccccCCCCCCcCCCCCcE
Confidence 8 249999999999987 59999986333334789999999999999999999976321 11234
Q ss_pred eEEeEEEEeEEEecCC-ccEEEEeeeCCCCCCCCCCCCceeEeeEEEEeEEEEec
Q 047315 309 AATNMTFENIIMNNVS-NPIIIDQAYCPFTSCPTKPPSRVKLSDIYFKNIRGTSS 362 (417)
Q Consensus 309 ~i~ni~~~ni~~~~~~-~~i~i~~~~~~~~~~~~~~~~~~~v~nI~~~ni~~~~~ 362 (417)
|+||+|+||+.+... .++.+. |. +..+.+||+|+||+++..
T Consensus 336 -I~nIt~~nI~gt~~~~~a~~l~--------cs----~~~pc~ni~~~nV~i~~~ 377 (404)
T PLN02188 336 -LSDIYFKNIRGTSSSQVAVLLK--------CS----RGVPCQGVYLQDVHLDLS 377 (404)
T ss_pred -EEeEEEEEEEEEecCceEEEEE--------EC----CCCCEeeEEEEeeEEEec
Confidence 999999999997753 344443 21 233688999999999864
No 13
>PLN02218 polygalacturonase ADPG
Probab=99.88 E-value=3.3e-20 Score=184.03 Aligned_cols=219 Identities=17% Similarity=0.227 Sum_probs=169.1
Q ss_pred cceEEeEe--cEEEeecCcccccC------------CCCeEEEcCceeeEEecCeEEcCCCcccccCCCCCCCCCCCCCc
Q 047315 103 SNITVQMK--GYLIASTNLSEYRF------------GAGWVEFGGVEGLTLTGGGTFDGRGAKAWPYNGCPTHFNCKLLP 168 (417)
Q Consensus 103 s~~~l~~~--G~l~~~~~~~~~~~------------~~~~i~~~~~~nv~I~G~G~idg~g~~~~~~~~~~~~~~~~~~~ 168 (417)
+|++|.+. |+|.+.. ...|.. .+.++.+.+++|++|+|.-..+. +.|
T Consensus 156 ~ni~I~G~~~GtIDG~G-~~WW~~~~~~~~~~~~~~rP~~i~f~~~~nv~I~gitl~nS---p~w--------------- 216 (431)
T PLN02218 156 NNLSVDGGSTGVVDGNG-ETWWQNSCKRNKAKPCTKAPTALTFYNSKSLIVKNLRVRNA---QQI--------------- 216 (431)
T ss_pred cEEEEECCCCcEEeCCc-hhhhhcccccCCcCccCcCCEEEEEEccccEEEeCeEEEcC---CCE---------------
Confidence 78888886 7887643 233321 24578999999999999433343 224
Q ss_pred ceEEEEeecceEEEeeEEecC----CcceEEEeceecEEEEeEEEECCCCCCCCCeEEee-cceeEEEEeeEEecCCceE
Q 047315 169 TNVKFVAMKKTIVRRITSVNS----KSFHIALVECKNFRGSKIKISAPANSPNTDGIHIE-RSSSVHVSRSHIGTGDDCI 243 (417)
Q Consensus 169 ~~i~~~~~~nv~I~~v~i~n~----~~~~i~~~~~~~v~i~n~~i~~~~~~~~~DGi~~~-~s~nv~I~n~~i~~gdD~i 243 (417)
.+++.+|+||+|+++++.++ ...||++.+|+||.|+|++|.+. .|.|.+. +++||+|+||.+..++ |+
T Consensus 217 -~i~~~~~~nV~i~~v~I~a~~~spNTDGIdi~ss~nV~I~n~~I~tG-----DDcIaIksgs~nI~I~n~~c~~GH-Gi 289 (431)
T PLN02218 217 -QISIEKCSNVQVSNVVVTAPADSPNTDGIHITNTQNIRVSNSIIGTG-----DDCISIESGSQNVQINDITCGPGH-GI 289 (431)
T ss_pred -EEEEEceeeEEEEEEEEeCCCCCCCCCcEeecccceEEEEccEEecC-----CceEEecCCCceEEEEeEEEECCC-CE
Confidence 49999999999999999874 24599999999999999999984 5788885 4889999999998775 79
Q ss_pred EecCC--------ceeEEEEeeEEcCC-ceEEEcccccCCCCCcEEEEEEEeeEEecCceEEEEEEecCC-------CCC
Q 047315 244 SVGQG--------NSEVTIASITCGPG-HGISVGSLGRYPNEGDVRGLVVRDSTMTGTMNGVRIKTWANS-------PGS 307 (417)
Q Consensus 244 ~i~s~--------s~nv~i~n~~~~~~-~gi~igs~~~~~~~~~v~ni~i~n~~~~~~~~gi~i~~~~~~-------~~g 307 (417)
+++|. .+||+|+||++.+. .|++|++... ..+.++||+|+|++|.+..++|.|...... +..
T Consensus 290 sIGS~g~~~~~~~V~nV~v~n~~~~~t~nGvRIKT~~G--g~G~v~nI~f~ni~m~~V~~pI~Idq~Y~~~~~~~~~~s~ 367 (431)
T PLN02218 290 SIGSLGDDNSKAFVSGVTVDGAKLSGTDNGVRIKTYQG--GSGTASNIIFQNIQMENVKNPIIIDQDYCDKSKCTSQQSA 367 (431)
T ss_pred EECcCCCCCCCceEEEEEEEccEEecCCcceEEeecCC--CCeEEEEEEEEeEEEEcccccEEEEeeccCCCCCCCCCCC
Confidence 99883 47999999999886 4999998733 347999999999999999999999865321 122
Q ss_pred eeEEeEEEEeEEEecCC-ccEEEEeeeCCCCCCCCCCCCceeEeeEEEEeEEEEe
Q 047315 308 SAATNMTFENIIMNNVS-NPIIIDQAYCPFTSCPTKPPSRVKLSDIYFKNIRGTS 361 (417)
Q Consensus 308 ~~i~ni~~~ni~~~~~~-~~i~i~~~~~~~~~~~~~~~~~~~v~nI~~~ni~~~~ 361 (417)
..|+||+|+||+.+... .++.+. |. +..+++||+|+||.++.
T Consensus 368 v~I~nI~~~NI~gtsa~~~ai~l~--------cs----~~~pc~nI~l~nV~i~~ 410 (431)
T PLN02218 368 VQVKNVVYRNISGTSASDVAITFN--------CS----KNYPCQGIVLDNVNIKG 410 (431)
T ss_pred eEEEEEEEEeEEEEecCCcEEEEE--------EC----CCCCEeeEEEEeEEEEC
Confidence 33899999999997653 344443 22 22368899999999875
No 14
>PLN03003 Probable polygalacturonase At3g15720
Probab=99.87 E-value=4.2e-20 Score=182.74 Aligned_cols=220 Identities=16% Similarity=0.248 Sum_probs=172.3
Q ss_pred cceEEeEecEEEeecCccccc---CCCCeEEEcCceeeEEecCeEEcCCCcccccCCCCCCCCCCCCCcceEEEEeecce
Q 047315 103 SNITVQMKGYLIASTNLSEYR---FGAGWVEFGGVEGLTLTGGGTFDGRGAKAWPYNGCPTHFNCKLLPTNVKFVAMKKT 179 (417)
Q Consensus 103 s~~~l~~~G~l~~~~~~~~~~---~~~~~i~~~~~~nv~I~G~G~idg~g~~~~~~~~~~~~~~~~~~~~~i~~~~~~nv 179 (417)
++++|.+.|+|.+.. ...|. ..+.++.+.+++|+.|+|.-.++. +.| .+++.+|+||
T Consensus 113 ~~i~I~G~GtIDGqG-~~wW~~~~~rP~~l~f~~~~nv~I~gitl~NS---p~w----------------~i~i~~c~nV 172 (456)
T PLN03003 113 EGLVIEGDGEINGQG-SSWWEHKGSRPTALKFRSCNNLRLSGLTHLDS---PMA----------------HIHISECNYV 172 (456)
T ss_pred cceEEeccceEeCCc-hhhhhcccCCceEEEEEecCCcEEeCeEEecC---CcE----------------EEEEeccccE
Confidence 789999999888653 33443 235689999999999999434443 233 4999999999
Q ss_pred EEEeeEEecC---C-cceEEEeceecEEEEeEEEECCCCCCCCCeEEee-cceeEEEEeeEEecCCceEEecCC------
Q 047315 180 IVRRITSVNS---K-SFHIALVECKNFRGSKIKISAPANSPNTDGIHIE-RSSSVHVSRSHIGTGDDCISVGQG------ 248 (417)
Q Consensus 180 ~I~~v~i~n~---~-~~~i~~~~~~~v~i~n~~i~~~~~~~~~DGi~~~-~s~nv~I~n~~i~~gdD~i~i~s~------ 248 (417)
+|++++|.++ + ..||++.+|+||.|+|++|.+ ..|+|.+. +|+||+|+||.+..++ ||+++|-
T Consensus 173 ~i~~l~I~ap~~spNTDGIDi~~S~nV~I~n~~I~t-----GDDCIaiksgs~NI~I~n~~c~~GH-GISIGSlg~~g~~ 246 (456)
T PLN03003 173 TISSLRINAPESSPNTDGIDVGASSNVVIQDCIIAT-----GDDCIAINSGTSNIHISGIDCGPGH-GISIGSLGKDGET 246 (456)
T ss_pred EEEEEEEeCCCCCCCCCcEeecCcceEEEEecEEec-----CCCeEEeCCCCccEEEEeeEEECCC-CeEEeeccCCCCc
Confidence 9999999974 2 459999999999999999998 45789886 4789999999998875 8999882
Q ss_pred --ceeEEEEeeEEcCC-ceEEEcccccCCCCCcEEEEEEEeeEEecCceEEEEEEecCC----------CCCeeEEeEEE
Q 047315 249 --NSEVTIASITCGPG-HGISVGSLGRYPNEGDVRGLVVRDSTMTGTMNGVRIKTWANS----------PGSSAATNMTF 315 (417)
Q Consensus 249 --s~nv~i~n~~~~~~-~gi~igs~~~~~~~~~v~ni~i~n~~~~~~~~gi~i~~~~~~----------~~g~~i~ni~~ 315 (417)
.+||+|+||++.++ +|++|++... ..+.++||+|+|++|.+..++|.|...... ..+..|+||+|
T Consensus 247 ~~V~NV~v~n~~~~~T~nGvRIKT~~G--g~G~v~nItf~nI~m~nV~~pI~Idq~Y~~~~~~~~~~~~~s~v~IsnI~f 324 (456)
T PLN03003 247 ATVENVCVQNCNFRGTMNGARIKTWQG--GSGYARMITFNGITLDNVENPIIIDQFYNGGDSDNAKDRKSSAVEVSKVVF 324 (456)
T ss_pred ceEEEEEEEeeEEECCCcEEEEEEeCC--CCeEEEEEEEEeEEecCccceEEEEcccCCCCCCCcccCCCCCcEEEeEEE
Confidence 58999999999987 4999998743 246899999999999999999999764421 11234999999
Q ss_pred EeEEEecC-CccEEEEeeeCCCCCCCCCCCCceeEeeEEEEeEEEEec
Q 047315 316 ENIIMNNV-SNPIIIDQAYCPFTSCPTKPPSRVKLSDIYFKNIRGTSS 362 (417)
Q Consensus 316 ~ni~~~~~-~~~i~i~~~~~~~~~~~~~~~~~~~v~nI~~~ni~~~~~ 362 (417)
+||+.+.. ..++.+. |+ +..+.+||+|+||.++..
T Consensus 325 ~NI~GTs~~~~ai~l~--------Cs----~~~PC~nI~l~ni~l~~~ 360 (456)
T PLN03003 325 SNFIGTSKSEYGVDFR--------CS----ERVPCTEIFLRDMKIETA 360 (456)
T ss_pred EeEEEEeCccceEEEE--------eC----CCCCeeeEEEEEEEEEec
Confidence 99998654 3455444 32 233578999999998864
No 15
>PLN02155 polygalacturonase
Probab=99.87 E-value=1.1e-19 Score=178.17 Aligned_cols=221 Identities=16% Similarity=0.258 Sum_probs=168.0
Q ss_pred cceEEeEecEEEeecCccccc---------CCCCeEEEcCceeeEEecCeEEcCCCcccccCCCCCCCCCCCCCcceEEE
Q 047315 103 SNITVQMKGYLIASTNLSEYR---------FGAGWVEFGGVEGLTLTGGGTFDGRGAKAWPYNGCPTHFNCKLLPTNVKF 173 (417)
Q Consensus 103 s~~~l~~~G~l~~~~~~~~~~---------~~~~~i~~~~~~nv~I~G~G~idg~g~~~~~~~~~~~~~~~~~~~~~i~~ 173 (417)
+++.|.+ |+|.... ...|. ....++.+.+++|+.|+|.-..+. +.| .+++
T Consensus 115 ~~i~i~G-G~iDGqG-~~ww~~~~~~~~~~~~p~~i~~~~~~nv~i~gitl~nS---p~w----------------~i~~ 173 (394)
T PLN02155 115 NRFSLVG-GTFDARA-NGFWSCRKSGQNCPPGVRSISFNSAKDVIISGVKSMNS---QVS----------------HMTL 173 (394)
T ss_pred CCCEEEc-cEEecCc-eeEEEcccCCCCCCCcccceeEEEeeeEEEECeEEEcC---CCe----------------EEEE
Confidence 6777777 7776532 22232 123578999999999999433332 234 4999
Q ss_pred EeecceEEEeeEEecCC----cceEEEeceecEEEEeEEEECCCCCCCCCeEEeec-ceeEEEEeeEEecCCceEEecCC
Q 047315 174 VAMKKTIVRRITSVNSK----SFHIALVECKNFRGSKIKISAPANSPNTDGIHIER-SSSVHVSRSHIGTGDDCISVGQG 248 (417)
Q Consensus 174 ~~~~nv~I~~v~i~n~~----~~~i~~~~~~~v~i~n~~i~~~~~~~~~DGi~~~~-s~nv~I~n~~i~~gdD~i~i~s~ 248 (417)
.+|+||+|++++|.++. ..||++..|++|.|+|++|.+ ..|+|.+.+ |+||+|+||.+..++ |++++|.
T Consensus 174 ~~~~nv~i~~v~I~~p~~~~NtDGidi~~s~nV~I~~~~I~~-----gDDcIaik~gs~nI~I~n~~c~~Gh-GisIGS~ 247 (394)
T PLN02155 174 NGCTNVVVRNVKLVAPGNSPNTDGFHVQFSTGVTFTGSTVQT-----GDDCVAIGPGTRNFLITKLACGPGH-GVSIGSL 247 (394)
T ss_pred ECeeeEEEEEEEEECCCCCCCCCccccccceeEEEEeeEEec-----CCceEEcCCCCceEEEEEEEEECCc-eEEeccc
Confidence 99999999999998743 359999999999999999998 457888864 789999999999875 8999883
Q ss_pred --------ceeEEEEeeEEcCC-ceEEEcccccCCCCCcEEEEEEEeeEEecCceEEEEEEecCC-----C---CCeeEE
Q 047315 249 --------NSEVTIASITCGPG-HGISVGSLGRYPNEGDVRGLVVRDSTMTGTMNGVRIKTWANS-----P---GSSAAT 311 (417)
Q Consensus 249 --------s~nv~i~n~~~~~~-~gi~igs~~~~~~~~~v~ni~i~n~~~~~~~~gi~i~~~~~~-----~---~g~~i~ 311 (417)
.+||+|+||++.+. .|++|++..+ +..+.++||+|+|++|.+...+|.|.+.... + .+..|+
T Consensus 248 g~~~~~~~V~nV~v~n~~~~~t~~GirIKT~~~-~~gG~v~nI~f~ni~m~~v~~pI~i~q~Y~~~~~~~~~~~s~v~i~ 326 (394)
T PLN02155 248 AKELNEDGVENVTVSSSVFTGSQNGVRIKSWAR-PSTGFVRNVFFQDLVMKNVENPIIIDQNYCPTHEGCPNEYSGVKIS 326 (394)
T ss_pred cccCCCCcEEEEEEEeeEEeCCCcEEEEEEecC-CCCEEEEEEEEEeEEEcCccccEEEEecccCCCCCCcCCCCCeEEE
Confidence 39999999999876 4999998522 1347899999999999999999999764321 0 112389
Q ss_pred eEEEEeEEEecCC-ccEEEEeeeCCCCCCCCCCCCceeEeeEEEEeEEEEecC
Q 047315 312 NMTFENIIMNNVS-NPIIIDQAYCPFTSCPTKPPSRVKLSDIYFKNIRGTSSS 363 (417)
Q Consensus 312 ni~~~ni~~~~~~-~~i~i~~~~~~~~~~~~~~~~~~~v~nI~~~ni~~~~~~ 363 (417)
||+|+|++..... .++.+. |. +..+.+||+|+||+++...
T Consensus 327 ~It~~ni~gt~~~~~a~~l~--------c~----~~~pc~~I~l~nv~i~~~~ 367 (394)
T PLN02155 327 QVTYKNIQGTSATQEAMKLV--------CS----KSSPCTGITLQDIKLTYNK 367 (394)
T ss_pred EEEEEeeEEEecCCceEEEE--------eC----CCCCEEEEEEEeeEEEecC
Confidence 9999999998763 344444 22 2336899999999998753
No 16
>PF00295 Glyco_hydro_28: Glycosyl hydrolases family 28; InterPro: IPR000743 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 28 GH28 from CAZY comprises enzymes with several known activities; polygalacturonase (3.2.1.15 from EC); exo-polygalacturonase (3.2.1.67 from EC); exo-polygalacturonase (3.2.1.82 from EC); rhamnogalacturonase (EC not defined). Polygalacturonase (PG) (pectinase) [, ] catalyses the random hydrolysis of 1,4-alpha-D-galactosiduronic linkages in pectate and other galacturonans. In fruit, polygalacturonase plays an important role in cell wall metabolism during ripening. In plant bacterial pathogens such as Erwinia carotovora or Ralstonia solanacearum (Pseudomonas solanacearum) and fungal pathogens such as Aspergillus niger, polygalacturonase is involved in maceration and soft-rotting of plant tissue. Exo-poly-alpha-D-galacturonosidase (3.2.1.82 from EC) (exoPG) [] hydrolyses peptic acid from the non-reducing end, releasing digalacturonate. PG and exoPG share a few regions of sequence similarity, and belong to family 28 of the glycosyl hydrolases.; GO: 0004650 polygalacturonase activity, 0005975 carbohydrate metabolic process; PDB: 1KCC_A 1KCD_A 1K5C_A 1HG8_A 2IQ7_A 2UVF_B 1RMG_A 1CZF_B 3JUR_C 1BHE_A ....
Probab=99.86 E-value=7.7e-20 Score=177.27 Aligned_cols=218 Identities=24% Similarity=0.305 Sum_probs=167.8
Q ss_pred cceEEeEecEEEeecCccccc----------CCCCeEEEcCceeeEEecCeEEcCCCcccccCCCCCCCCCCCCCcceEE
Q 047315 103 SNITVQMKGYLIASTNLSEYR----------FGAGWVEFGGVEGLTLTGGGTFDGRGAKAWPYNGCPTHFNCKLLPTNVK 172 (417)
Q Consensus 103 s~~~l~~~G~l~~~~~~~~~~----------~~~~~i~~~~~~nv~I~G~G~idg~g~~~~~~~~~~~~~~~~~~~~~i~ 172 (417)
+++++.+.|+|.+... ..|+ ..+.++.+.+++++.|+|.-..+. +.| .++
T Consensus 60 ~ni~i~G~G~IDG~G~-~w~~~~~~~~~~~~~rp~~i~~~~~~~~~i~~i~~~ns---p~w----------------~~~ 119 (326)
T PF00295_consen 60 ENITITGKGTIDGNGQ-AWWDGSGDANNNGQRRPRLIRFNNCKNVTIEGITIRNS---PFW----------------HIH 119 (326)
T ss_dssp EEEECTTSSEEE--GG-GTCSSCTTHCCSSSSSSESEEEEEEEEEEEESEEEES----SSE----------------SEE
T ss_pred EEEEecCCceEcCchh-hhhccccccccccccccceeeeeeecceEEEeeEecCC---Cee----------------EEE
Confidence 6777777778876532 3332 125779999999999999433333 224 489
Q ss_pred EEeecceEEEeeEEecCC----cceEEEeceecEEEEeEEEECCCCCCCCCeEEeecce-eEEEEeeEEecCCceEEecC
Q 047315 173 FVAMKKTIVRRITSVNSK----SFHIALVECKNFRGSKIKISAPANSPNTDGIHIERSS-SVHVSRSHIGTGDDCISVGQ 247 (417)
Q Consensus 173 ~~~~~nv~I~~v~i~n~~----~~~i~~~~~~~v~i~n~~i~~~~~~~~~DGi~~~~s~-nv~I~n~~i~~gdD~i~i~s 247 (417)
+.+|+||+|++++|.++. ..||++.+|++++|+||.|.+ ..|+|.+.+.+ ||+|+||.+..++ ++++++
T Consensus 120 ~~~~~nv~i~~i~I~~~~~~~NtDGid~~~s~nv~I~n~~i~~-----gDD~Iaiks~~~ni~v~n~~~~~gh-GisiGS 193 (326)
T PF00295_consen 120 INDCDNVTISNITINNPANSPNTDGIDIDSSKNVTIENCFIDN-----GDDCIAIKSGSGNILVENCTCSGGH-GISIGS 193 (326)
T ss_dssp EESEEEEEEESEEEEEGGGCTS--SEEEESEEEEEEESEEEES-----SSESEEESSEECEEEEESEEEESSS-EEEEEE
T ss_pred EEccCCeEEcceEEEecCCCCCcceEEEEeeeEEEEEEeeccc-----ccCcccccccccceEEEeEEEeccc-cceeee
Confidence 999999999999999864 359999999999999999998 45789997755 9999999998775 698876
Q ss_pred ---C-----ceeEEEEeeEEcCC-ceEEEcccccCCCCCcEEEEEEEeeEEecCceEEEEEEecCC--------CCCeeE
Q 047315 248 ---G-----NSEVTIASITCGPG-HGISVGSLGRYPNEGDVRGLVVRDSTMTGTMNGVRIKTWANS--------PGSSAA 310 (417)
Q Consensus 248 ---~-----s~nv~i~n~~~~~~-~gi~igs~~~~~~~~~v~ni~i~n~~~~~~~~gi~i~~~~~~--------~~g~~i 310 (417)
+ -+||+|+||++.++ .|++|++.. +..+.++||+|+|++|.+..+++.|...... .... +
T Consensus 194 ~~~~~~~~~i~nV~~~n~~i~~t~~gi~iKt~~--~~~G~v~nI~f~ni~~~~v~~pi~i~~~y~~~~~~~~~~~~~~-i 270 (326)
T PF00295_consen 194 EGSGGSQNDIRNVTFENCTIINTDNGIRIKTWP--GGGGYVSNITFENITMENVKYPIFIDQDYRDGGPCGKPPSGVS-I 270 (326)
T ss_dssp ESSSSE--EEEEEEEEEEEEESESEEEEEEEET--TTSEEEEEEEEEEEEEEEESEEEEEEEEECTTEESSCSSSSSE-E
T ss_pred ccCCccccEEEeEEEEEEEeeccceEEEEEEec--ccceEEeceEEEEEEecCCceEEEEEeccccccccCcccCCce-E
Confidence 2 37999999999887 499998853 2458999999999999999999988764221 1235 9
Q ss_pred EeEEEEeEEEecCC-ccEEEEeeeCCCCCCCCCCCCceeEeeEEEEeEEEEe
Q 047315 311 TNMTFENIIMNNVS-NPIIIDQAYCPFTSCPTKPPSRVKLSDIYFKNIRGTS 361 (417)
Q Consensus 311 ~ni~~~ni~~~~~~-~~i~i~~~~~~~~~~~~~~~~~~~v~nI~~~ni~~~~ 361 (417)
+||+|+||+..... .++.+. |. +..+++||+|+||.++.
T Consensus 271 ~nI~~~nitg~~~~~~~i~i~--------~~----~~~~~~ni~f~nv~i~~ 310 (326)
T PF00295_consen 271 SNITFRNITGTSAGSSAISID--------CS----PGSPCSNITFENVNITG 310 (326)
T ss_dssp EEEEEEEEEEEESTSEEEEEE---------B----TTSSEEEEEEEEEEEES
T ss_pred EEEEEEeeEEEeccceEEEEE--------EC----CcCcEEeEEEEeEEEEc
Confidence 99999999998876 555554 11 22369999999999998
No 17
>PLN03010 polygalacturonase
Probab=99.85 E-value=8.1e-19 Score=172.57 Aligned_cols=216 Identities=19% Similarity=0.252 Sum_probs=168.9
Q ss_pred cceEEeEecEEEeecCcccccCCCCeEEEcCceeeEEecCeEEcCCCcccccCCCCCCCCCCCCCcceEEEEeecceEEE
Q 047315 103 SNITVQMKGYLIASTNLSEYRFGAGWVEFGGVEGLTLTGGGTFDGRGAKAWPYNGCPTHFNCKLLPTNVKFVAMKKTIVR 182 (417)
Q Consensus 103 s~~~l~~~G~l~~~~~~~~~~~~~~~i~~~~~~nv~I~G~G~idg~g~~~~~~~~~~~~~~~~~~~~~i~~~~~~nv~I~ 182 (417)
++++|.+.|+|.... ...|. ++.+.+++|++|+|.-..+. +.| .+++.+|++|+|+
T Consensus 139 ~nv~I~G~G~IDG~G-~~ww~----~l~~~~~~nv~v~gitl~ns---p~~----------------~i~i~~~~nv~i~ 194 (409)
T PLN03010 139 SGLMIDGSGTIDGRG-SSFWE----ALHISKCDNLTINGITSIDS---PKN----------------HISIKTCNYVAIS 194 (409)
T ss_pred cccEEeeceEEeCCC-ccccc----eEEEEeecCeEEeeeEEEcC---Cce----------------EEEEeccccEEEE
Confidence 889999999988653 33443 58899999999999444443 223 4899999999999
Q ss_pred eeEEecCC----cceEEEeceecEEEEeEEEECCCCCCCCCeEEeec-ceeEEEEeeEEecCCceEEecCC--------c
Q 047315 183 RITSVNSK----SFHIALVECKNFRGSKIKISAPANSPNTDGIHIER-SSSVHVSRSHIGTGDDCISVGQG--------N 249 (417)
Q Consensus 183 ~v~i~n~~----~~~i~~~~~~~v~i~n~~i~~~~~~~~~DGi~~~~-s~nv~I~n~~i~~gdD~i~i~s~--------s 249 (417)
++++.++. ..||++..|++|+|+|++|.+. .|+|.+.+ +.++.|+++.+..++ ||+++|. .
T Consensus 195 ~i~I~a~~~s~NTDGiDi~~s~nV~I~n~~I~~g-----DDcIaiksgs~ni~I~~~~C~~gH-GisIGS~g~~~~~~~V 268 (409)
T PLN03010 195 KINILAPETSPNTDGIDISYSTNINIFDSTIQTG-----DDCIAINSGSSNINITQINCGPGH-GISVGSLGADGANAKV 268 (409)
T ss_pred EEEEeCCCCCCCCCceeeeccceEEEEeeEEecC-----CCeEEecCCCCcEEEEEEEeECcC-CEEEccCCCCCCCCee
Confidence 99998753 4599999999999999999984 57888864 568888888887665 8999883 4
Q ss_pred eeEEEEeeEEcCC-ceEEEcccccCCCCCcEEEEEEEeeEEecCceEEEEEEecCC--------CCCeeEEeEEEEeEEE
Q 047315 250 SEVTIASITCGPG-HGISVGSLGRYPNEGDVRGLVVRDSTMTGTMNGVRIKTWANS--------PGSSAATNMTFENIIM 320 (417)
Q Consensus 250 ~nv~i~n~~~~~~-~gi~igs~~~~~~~~~v~ni~i~n~~~~~~~~gi~i~~~~~~--------~~g~~i~ni~~~ni~~ 320 (417)
+||+|+||++.++ .|++|++... ..+.++||+|+|++|.+..++|.|.+.... +.+..|+||+|+||+.
T Consensus 269 ~nV~v~n~~i~~t~~GirIKt~~G--~~G~v~nItf~nI~m~~v~~pI~I~q~Y~~~~~~~~~~~s~v~Isdi~~~ni~G 346 (409)
T PLN03010 269 SDVHVTHCTFNQTTNGARIKTWQG--GQGYARNISFENITLINTKNPIIIDQQYIDKGKLDATKDSAVAISNVKYVGFRG 346 (409)
T ss_pred EEEEEEeeEEeCCCcceEEEEecC--CCEEEEEeEEEeEEEecCCccEEEEeeccCCCCCCCCCCCceEEEeEEEEeeEE
Confidence 9999999999987 5999998732 347899999999999999999999875422 1234489999999999
Q ss_pred ecCC-ccEEEEeeeCCCCCCCCCCCCceeEeeEEEEeEEEEec
Q 047315 321 NNVS-NPIIIDQAYCPFTSCPTKPPSRVKLSDIYFKNIRGTSS 362 (417)
Q Consensus 321 ~~~~-~~i~i~~~~~~~~~~~~~~~~~~~v~nI~~~ni~~~~~ 362 (417)
+... .++.+. |+ +..+.+||+|+||.++..
T Consensus 347 T~~~~~~i~l~--------Cs----~~~pC~ni~~~~v~l~~~ 377 (409)
T PLN03010 347 TTSNENAITLK--------CS----AITHCKDVVMDDIDVTME 377 (409)
T ss_pred EeCCCccEEEE--------eC----CCCCEeceEEEEEEEEec
Confidence 7543 455554 32 223577999999999864
No 18
>PF03718 Glyco_hydro_49: Glycosyl hydrolase family 49; InterPro: IPR005192 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is a family of dextranase (3.2.1.11 from EC) and isopullulanase (3.2.1.57 from EC) which are all members of glycoside hydrolase family 49 (GH49 from CAZY). Dextranase hydrolyses alpha-1,6-glycosidic bonds in dextran polymers.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds; PDB: 1X0C_A 1WMR_A 2Z8G_B 1OGM_X 1OGO_X.
Probab=99.81 E-value=2.3e-17 Score=161.49 Aligned_cols=271 Identities=18% Similarity=0.189 Sum_probs=154.9
Q ss_pred eEEEecCCeeeEee---eEEecCccCccce-EEeEe-cEEEeecCcccccCCCCeEEEcCceeeEEecCeEEcCCCcccc
Q 047315 79 VTLLVPHGTYLIGP---IKFAGPCKNVSNI-TVQMK-GYLIASTNLSEYRFGAGWVEFGGVEGLTLTGGGTFDGRGAKAW 153 (417)
Q Consensus 79 g~V~ip~GtY~~~~---l~l~~~~~~~s~~-~l~~~-G~l~~~~~~~~~~~~~~~i~~~~~~nv~I~G~G~idg~g~~~~ 153 (417)
.+|||+||+|.++. ++|+ +++ +|+++ |.... +++.+....+|+.|.|+|++.|....|.
T Consensus 233 ~~lYF~PGVy~ig~~~~l~L~------sn~~~VYlApGAyVk----------GAf~~~~~~~nv~i~G~GVLSGe~Yvy~ 296 (582)
T PF03718_consen 233 DTLYFKPGVYWIGSDYHLRLP------SNTKWVYLAPGAYVK----------GAFEYTDTQQNVKITGRGVLSGEQYVYE 296 (582)
T ss_dssp SEEEE-SEEEEEBCTC-EEE-------TT--EEEE-TTEEEE----------S-EEE---SSEEEEESSSEEE-TTS-TT
T ss_pred ceEEeCCceEEeCCCccEEEC------CCccEEEEcCCcEEE----------EEEEEccCCceEEEEeeEEEcCcceeEe
Confidence 59999999999984 8888 775 78888 53333 1333445789999999999999887663
Q ss_pred cCCCCCCCCC-------CC-CCcceEE---EEeecceEEEeeEEecCCcceEEEecee----cEEEEeEEEECCCCCCCC
Q 047315 154 PYNGCPTHFN-------CK-LLPTNVK---FVAMKKTIVRRITSVNSKSFHIALVECK----NFRGSKIKISAPANSPNT 218 (417)
Q Consensus 154 ~~~~~~~~~~-------~~-~~~~~i~---~~~~~nv~I~~v~i~n~~~~~i~~~~~~----~v~i~n~~i~~~~~~~~~ 218 (417)
... ...+. +. ..-+++. ...+.++.+++++|.++|.|.+.+.+.+ +..|+|.++.+.+. .++
T Consensus 297 A~~--~e~y~~~s~A~~~~~~~lkm~~~~~~~g~q~~~~~GiTI~~pP~~Sm~l~g~~~~~~~~~i~nyKqVGaW~-~qt 373 (582)
T PF03718_consen 297 ADT--EESYLHLSGAVKCHRESLKMLWHISANGGQTLTCEGITINDPPFHSMDLYGNENDKFSMNISNYKQVGAWY-FQT 373 (582)
T ss_dssp BBC--CCTTSB-SSC---TTTB--SEEECS-SSSEEEEEES-EEE--SS-SEEEESSSGGGEEEEEEEEEEE---C-TT-
T ss_pred ccC--CCCccccccccccchhhhhhhhhhccCCcceEEEEeeEecCCCcceEEecCCccccccceeeceeeeeeEE-ecc
Confidence 211 11111 00 1123454 3446699999999999999999999655 48999999998764 689
Q ss_pred CeEEeecceeEEEEeeEEecCCceEEecCCceeEEEEeeEEcCCc-e--EEEcccccCCCCCcEEEEEEEeeEEecCc--
Q 047315 219 DGIHIERSSSVHVSRSHIGTGDDCISVGQGNSEVTIASITCGPGH-G--ISVGSLGRYPNEGDVRGLVVRDSTMTGTM-- 293 (417)
Q Consensus 219 DGi~~~~s~nv~I~n~~i~~gdD~i~i~s~s~nv~i~n~~~~~~~-g--i~igs~~~~~~~~~v~ni~i~n~~~~~~~-- 293 (417)
|||.+. ++-+|+||+++..||+|.+.. +++.|+||.++..+ | +.+|.. ...+++|.|+|+.+.+++
T Consensus 374 DGi~ly--~nS~i~dcF~h~nDD~iKlYh--S~v~v~~~ViWk~~Ngpiiq~GW~-----pr~isnv~veni~IIh~r~~ 444 (582)
T PF03718_consen 374 DGIELY--PNSTIRDCFIHVNDDAIKLYH--SNVSVSNTVIWKNENGPIIQWGWT-----PRNISNVSVENIDIIHNRWI 444 (582)
T ss_dssp ---B----TT-EEEEEEEEESS-SEE--S--TTEEEEEEEEEE-SSS-SEE--CS--------EEEEEEEEEEEEE---S
T ss_pred CCcccc--CCCeeeeeEEEecCchhheee--cCcceeeeEEEecCCCCeEEeecc-----ccccCceEEeeeEEEeeeee
Confidence 999998 477789999999999997764 59999999998764 3 777643 467999999999998752
Q ss_pred -------eEEEEEEecC----CC----CCeeEEeEEEEeEEEecCC-ccEEEEeeeCCCCCCCCCCCCceeEeeEEEEeE
Q 047315 294 -------NGVRIKTWAN----SP----GSSAATNMTFENIIMNNVS-NPIIIDQAYCPFTSCPTKPPSRVKLSDIYFKNI 357 (417)
Q Consensus 294 -------~gi~i~~~~~----~~----~g~~i~ni~~~ni~~~~~~-~~i~i~~~~~~~~~~~~~~~~~~~v~nI~~~ni 357 (417)
.+|--.+... .+ ....|++++|+|+++++.- ..+.|.. .-..+|+.++|+
T Consensus 445 ~~~~~~n~~I~~ss~~y~~~~s~~~adp~~ti~~~~~~nv~~EG~~~~l~ri~p--------------lqn~~nl~ikN~ 510 (582)
T PF03718_consen 445 WHNNYVNTAILGSSPFYDDMASTKTADPSTTIRNMTFSNVRCEGMCPCLFRIYP--------------LQNYDNLVIKNV 510 (582)
T ss_dssp SGGCTTT-ECEEE--BTTS-SSS--BEEEEEEEEEEEEEEEEECCE-ECEEE----------------SEEEEEEEEEEE
T ss_pred cccCCCCceeEecccccccccCCCCCCcccceeeEEEEeEEEecccceeEEEee--------------cCCCcceEEEEe
Confidence 3443332211 10 1122799999999999864 3445541 113455556666
Q ss_pred EEEe-----cCCceEEEee------cCCCceeeEEEEeEEEEeCC
Q 047315 358 RGTS-----SSAVAVALEC------SKGIPCQNIYLENVHLDLSS 391 (417)
Q Consensus 358 ~~~~-----~~~~~~~i~~------~~~~~~~~i~~~nv~i~~~~ 391 (417)
.+.. .......+.. .......+|.|+|.+|.++.
T Consensus 511 ~~~~w~~~~~~~~~s~~k~~~~~~~~~~~~~~gi~i~N~tVgg~~ 555 (582)
T PF03718_consen 511 HFESWNGLDITSQVSGLKAYYNMANNKQNDTMGIIIENWTVGGEK 555 (582)
T ss_dssp EECEET-CGCSTT-EEE---CCTTT--B--EEEEEEEEEEETTEE
T ss_pred ecccccCcccccceeeccccccccccccccccceEEEeEEECCEE
Confidence 5541 1111111111 11234788999999887664
No 19
>TIGR03805 beta_helix_1 parallel beta-helix repeat-containing protein. Members of this protein family contain a tandem pair of beta-helix repeats (see TIGR03804). Each repeat is expected to consist of three beta strands that form a single turn as they form a right-handed helix of stacked beta-structure. Member proteinsa occur regularly in two-gene pairs along with another uncharacterized protein family; both protein families exhibit either lipoprotein or regular signal peptides, suggesting transit through the plasma membrane, and the two may be fused. The function of the pair is unknown.
Probab=99.73 E-value=3.6e-16 Score=150.38 Aligned_cols=196 Identities=16% Similarity=0.236 Sum_probs=108.8
Q ss_pred HHHHHHHHhhcCCCeEEEecCCeeeEe-eeEEecCccCccceEEeEecEEEeecCcccccCCCCeEEEcCceeeEEecCe
Q 047315 65 FEAAWKEACETTGAVTLLVPHGTYLIG-PIKFAGPCKNVSNITVQMKGYLIASTNLSEYRFGAGWVEFGGVEGLTLTGGG 143 (417)
Q Consensus 65 iq~Al~~a~~~~ggg~V~ip~GtY~~~-~l~l~~~~~~~s~~~l~~~G~l~~~~~~~~~~~~~~~i~~~~~~nv~I~G~G 143 (417)
||+|+++| ..|.+|+||+|+|.++ +|.+. + ++++|.++|. +..
T Consensus 1 iQ~Ai~~A---~~GDtI~l~~G~Y~~~~~l~I~---~--~~Iti~G~g~----------------------~~t------ 44 (314)
T TIGR03805 1 LQEALIAA---QPGDTIVLPEGVFQFDRTLSLD---A--DGVTIRGAGM----------------------DET------ 44 (314)
T ss_pred CHhHHhhC---CCCCEEEECCCEEEcceeEEEe---C--CCeEEEecCC----------------------Ccc------
Confidence 68998765 4578999999999974 77775 2 6677766541 001
Q ss_pred EEcCCCcccccCCCCCCCCCCCCCcceEEEEeecceEEEeeEEecCCcceEEEeceecEEEEeEEEECCCC---CCCCCe
Q 047315 144 TFDGRGAKAWPYNGCPTHFNCKLLPTNVKFVAMKKTIVRRITSVNSKSFHIALVECKNFRGSKIKISAPAN---SPNTDG 220 (417)
Q Consensus 144 ~idg~g~~~~~~~~~~~~~~~~~~~~~i~~~~~~nv~I~~v~i~n~~~~~i~~~~~~~v~i~n~~i~~~~~---~~~~DG 220 (417)
+|++.++. .....+ +..+++|+|+++++.++..+++.+..|++++|+++++..... ....+|
T Consensus 45 vid~~~~~--------------~~~~~i-~v~a~~VtI~~ltI~~~~~~GI~v~~s~~i~I~n~~i~~~~~~~~~~~~~G 109 (314)
T TIGR03805 45 ILDFSGQV--------------GGAEGL-LVTSDDVTLSDLAVENTKGDGVKVKGSDGIIIRRLRVEWTGGPKSSNGAYG 109 (314)
T ss_pred EEecccCC--------------CCCceE-EEEeCCeEEEeeEEEcCCCCeEEEeCCCCEEEEeeEEEeccCccccCCcce
Confidence 12221110 001123 224566666666666666666666666666666666653211 123456
Q ss_pred EEeecceeEEEEeeEEecC-CceEEecCCceeEEEEeeEEcCCc-eEEEcccccCCCCCcEEEEEEEeeEEecCceEEEE
Q 047315 221 IHIERSSSVHVSRSHIGTG-DDCISVGQGNSEVTIASITCGPGH-GISVGSLGRYPNEGDVRGLVVRDSTMTGTMNGVRI 298 (417)
Q Consensus 221 i~~~~s~nv~I~n~~i~~g-dD~i~i~s~s~nv~i~n~~~~~~~-gi~igs~~~~~~~~~v~ni~i~n~~~~~~~~gi~i 298 (417)
|.+..|++++|++|+++.. |+||.++. +++++|++|++.... |+.+. ...++.++++++.+...|+.+
T Consensus 110 I~~~~s~~v~I~~n~i~g~~d~GIyv~~-s~~~~v~nN~~~~n~~GI~i~---------~S~~~~v~~N~~~~N~~Gi~v 179 (314)
T TIGR03805 110 IYPVESTNVLVEDSYVRGASDAGIYVGQ-SQNIVVRNNVAEENVAGIEIE---------NSQNADVYNNIATNNTGGILV 179 (314)
T ss_pred EEEeccCCEEEECCEEECCCcccEEECC-CCCeEEECCEEccCcceEEEE---------ecCCcEEECCEEeccceeEEE
Confidence 6666666666666666654 33666654 566666666665443 55541 123456666666665556666
Q ss_pred EEecCCCCCeeEEeEEEEeEEEec
Q 047315 299 KTWANSPGSSAATNMTFENIIMNN 322 (417)
Q Consensus 299 ~~~~~~~~g~~i~ni~~~ni~~~~ 322 (417)
...++.+... -+++++++.++.+
T Consensus 180 ~~~p~~~~~~-s~~~~v~~N~i~~ 202 (314)
T TIGR03805 180 FDLPGLPQPG-GSNVRVFDNIIFD 202 (314)
T ss_pred eecCCCCcCC-ccceEEECCEEEC
Confidence 4444322222 3455555555543
No 20
>COG5434 PGU1 Endopygalactorunase [Cell envelope biogenesis, outer membrane]
Probab=99.37 E-value=1.3e-11 Score=124.31 Aligned_cols=154 Identities=18% Similarity=0.263 Sum_probs=128.2
Q ss_pred CcceEEEeceecEEEEeEEEECCCCCCCCCeEEeecceeEEEEeeEEecCC----ceEEecCCceeEEEEeeEEcCCc-e
Q 047315 190 KSFHIALVECKNFRGSKIKISAPANSPNTDGIHIERSSSVHVSRSHIGTGD----DCISVGQGNSEVTIASITCGPGH-G 264 (417)
Q Consensus 190 ~~~~i~~~~~~~v~i~n~~i~~~~~~~~~DGi~~~~s~nv~I~n~~i~~gd----D~i~i~s~s~nv~i~n~~~~~~~-g 264 (417)
+...+.+..|+||.+++++|.+++ ..++++..|+|++++|.++.+.+ |++.+.+ ++||+|++|+|..++ .
T Consensus 237 rp~~~~l~~c~NV~~~g~~i~ns~----~~~~h~~~~~nl~~~nl~I~~~~~~NtDG~d~~s-c~NvlI~~~~fdtgDD~ 311 (542)
T COG5434 237 RPRTVVLKGCRNVLLEGLNIKNSP----LWTVHPVDCDNLTFRNLTIDANRFDNTDGFDPGS-CSNVLIEGCRFDTGDDC 311 (542)
T ss_pred CCceEEEeccceEEEeeeEecCCC----cEEEeeecccCceecceEEECCCCCCCCcccccc-ceeEEEeccEEecCCce
Confidence 445789999999999999999965 36899999999999999998764 5999988 899999999999886 4
Q ss_pred EEEcccccCC---CCCcEEEEEEEeeEEecCceEEEEEEecCCCCCeeEEeEEEEeEEEecCCccEEEEeeeCCCCCCCC
Q 047315 265 ISVGSLGRYP---NEGDVRGLVVRDSTMTGTMNGVRIKTWANSPGSSAATNMTFENIIMNNVSNPIIIDQAYCPFTSCPT 341 (417)
Q Consensus 265 i~igs~~~~~---~~~~v~ni~i~n~~~~~~~~gi~i~~~~~~~~g~~i~ni~~~ni~~~~~~~~i~i~~~~~~~~~~~~ 341 (417)
+++++..... .....++|+|+||.|...+.++.+.++.+ ++ ++||++||+.+.+...++.|+..
T Consensus 312 I~iksg~~~~~~~~~~~~~~i~i~~c~~~~ghG~~v~Gse~~--gg--v~ni~ved~~~~~~d~GLRikt~--------- 378 (542)
T COG5434 312 IAIKSGAGLDGKKGYGPSRNIVIRNCYFSSGHGGLVLGSEMG--GG--VQNITVEDCVMDNTDRGLRIKTN--------- 378 (542)
T ss_pred EEeecccCCcccccccccccEEEecceecccccceEeeeecC--Cc--eeEEEEEeeeeccCcceeeeeee---------
Confidence 8997753221 11346999999999998888899988886 35 79999999999999999999974
Q ss_pred CCCCceeEeeEEEEeEEEEec
Q 047315 342 KPPSRVKLSDIYFKNIRGTSS 362 (417)
Q Consensus 342 ~~~~~~~v~nI~~~ni~~~~~ 362 (417)
...++.++||+|+++.....
T Consensus 379 -~~~gG~v~nI~~~~~~~~nv 398 (542)
T COG5434 379 -DGRGGGVRNIVFEDNKMRNV 398 (542)
T ss_pred -cccceeEEEEEEecccccCc
Confidence 23346899999999887664
No 21
>TIGR03805 beta_helix_1 parallel beta-helix repeat-containing protein. Members of this protein family contain a tandem pair of beta-helix repeats (see TIGR03804). Each repeat is expected to consist of three beta strands that form a single turn as they form a right-handed helix of stacked beta-structure. Member proteinsa occur regularly in two-gene pairs along with another uncharacterized protein family; both protein families exhibit either lipoprotein or regular signal peptides, suggesting transit through the plasma membrane, and the two may be fused. The function of the pair is unknown.
Probab=99.07 E-value=5e-08 Score=94.14 Aligned_cols=171 Identities=14% Similarity=0.154 Sum_probs=125.0
Q ss_pred ceeeEEecCeEEcCCCcccccCCCCCCCCCCCCCcceEEEEeecceEEEeeEEec-------CCcceEEEeceecEEEEe
Q 047315 134 VEGLTLTGGGTFDGRGAKAWPYNGCPTHFNCKLLPTNVKFVAMKKTIVRRITSVN-------SKSFHIALVECKNFRGSK 206 (417)
Q Consensus 134 ~~nv~I~G~G~idg~g~~~~~~~~~~~~~~~~~~~~~i~~~~~~nv~I~~v~i~n-------~~~~~i~~~~~~~v~i~n 206 (417)
+++|+|+| -++...+ ..+|.+.+|++++|+++++.. ...+|+.+..|++++|++
T Consensus 62 a~~VtI~~-ltI~~~~------------------~~GI~v~~s~~i~I~n~~i~~~~~~~~~~~~~GI~~~~s~~v~I~~ 122 (314)
T TIGR03805 62 SDDVTLSD-LAVENTK------------------GDGVKVKGSDGIIIRRLRVEWTGGPKSSNGAYGIYPVESTNVLVED 122 (314)
T ss_pred eCCeEEEe-eEEEcCC------------------CCeEEEeCCCCEEEEeeEEEeccCccccCCcceEEEeccCCEEEEC
Confidence 58899998 3333221 236888999999999999962 246899999999999999
Q ss_pred EEEECCCCCCCCCeEEeecceeEEEEeeEEecCCceEEecCCceeEEEEeeEEcCCc-eEEEcccccCCCCCcEEEEEEE
Q 047315 207 IKISAPANSPNTDGIHIERSSSVHVSRSHIGTGDDCISVGQGNSEVTIASITCGPGH-GISVGSLGRYPNEGDVRGLVVR 285 (417)
Q Consensus 207 ~~i~~~~~~~~~DGi~~~~s~nv~I~n~~i~~gdD~i~i~s~s~nv~i~n~~~~~~~-gi~igs~~~~~~~~~v~ni~i~ 285 (417)
+++... ..+||.+..|++++|+++++.....||.+.. +.+++|+++.+.... |+.+...... .....++++|+
T Consensus 123 n~i~g~----~d~GIyv~~s~~~~v~nN~~~~n~~GI~i~~-S~~~~v~~N~~~~N~~Gi~v~~~p~~-~~~~s~~~~v~ 196 (314)
T TIGR03805 123 SYVRGA----SDAGIYVGQSQNIVVRNNVAEENVAGIEIEN-SQNADVYNNIATNNTGGILVFDLPGL-PQPGGSNVRVF 196 (314)
T ss_pred CEEECC----CcccEEECCCCCeEEECCEEccCcceEEEEe-cCCcEEECCEEeccceeEEEeecCCC-CcCCccceEEE
Confidence 999873 2359999999999999999999988999875 789999999998654 7777443111 12356799999
Q ss_pred eeEEecCce-EEE-----EEEecCCCCCeeE----EeEEEEeEEEecCCc-cEEEEe
Q 047315 286 DSTMTGTMN-GVR-----IKTWANSPGSSAA----TNMTFENIIMNNVSN-PIIIDQ 331 (417)
Q Consensus 286 n~~~~~~~~-gi~-----i~~~~~~~~g~~i----~ni~~~ni~~~~~~~-~i~i~~ 331 (417)
++++.+... .+. +...+. ..|. + +++.|+|.++.+... ++.+..
T Consensus 197 ~N~i~~n~~~n~~~~gn~v~~~~~-g~Gi-~i~~~~~v~I~~N~i~~n~~~~i~~~~ 251 (314)
T TIGR03805 197 DNIIFDNNTPNFAPAGSIVASVPA-GTGV-VVMANRDVEIFGNVISNNDTANVLISS 251 (314)
T ss_pred CCEEECCCCCCCcccCCceecCCC-CcEE-EEEcccceEEECCEEeCCcceeEEEEe
Confidence 999987532 111 111111 1233 3 899999999998875 455543
No 22
>PF12541 DUF3737: Protein of unknown function (DUF3737) ; InterPro: IPR022208 This family of proteins is found in bacteria, archaea and eukaryotes. Proteins in this family are typically between 281 and 297 amino acids in length.
Probab=98.87 E-value=3.8e-08 Score=89.18 Aligned_cols=123 Identities=14% Similarity=0.212 Sum_probs=86.9
Q ss_pred EEeecceEEEeeEEecCCcceEEEeceecEEEEeEEEECCCCCCC-----CCeE------EeecceeEEEEeeEEecCCc
Q 047315 173 FVAMKKTIVRRITSVNSKSFHIALVECKNFRGSKIKISAPANSPN-----TDGI------HIERSSSVHVSRSHIGTGDD 241 (417)
Q Consensus 173 ~~~~~nv~I~~v~i~n~~~~~i~~~~~~~v~i~n~~i~~~~~~~~-----~DGi------~~~~s~nv~I~n~~i~~gdD 241 (417)
|+.|++++++++++.+++... ..|++++++|+.+.+.....+ -|++ .+++++||.|+|+++.+.|
T Consensus 94 fR~~~~i~L~nv~~~~A~Et~---W~c~~i~l~nv~~~gdYf~m~s~ni~id~l~~~GnY~Fq~~kNvei~ns~l~sKD- 169 (277)
T PF12541_consen 94 FRECSNITLENVDIPDADETL---WNCRGIKLKNVQANGDYFFMNSENIYIDNLVLDGNYSFQYCKNVEIHNSKLDSKD- 169 (277)
T ss_pred hhcccCcEEEeeEeCCCcccC---EEeCCeEEEeEEEeceEeeeeccceEEeceEEeCCEEeeceeeEEEEccEEeccc-
Confidence 457888899988888776543 367777777777744222111 2333 3356899999999999887
Q ss_pred eEEecCCceeEEEEeeEEcCCceEEEcccccCCCCCcEEEEEEEeeEEecCceEEEEEEecCCCCCeeEEeEEEEeEEEe
Q 047315 242 CISVGQGNSEVTIASITCGPGHGISVGSLGRYPNEGDVRGLVVRDSTMTGTMNGVRIKTWANSPGSSAATNMTFENIIMN 321 (417)
Q Consensus 242 ~i~i~s~s~nv~i~n~~~~~~~gi~igs~~~~~~~~~v~ni~i~n~~~~~~~~gi~i~~~~~~~~g~~i~ni~~~ni~~~ 321 (417)
|++. ++||+|.|+.+.+-. ++ ...+|+++.||++.+.+ |+ -+ ++|++++|+++.
T Consensus 170 --AFWn-~eNVtVyDS~i~GEY-Lg----------W~SkNltliNC~I~g~Q-pL----------CY-~~~L~l~nC~~~ 223 (277)
T PF12541_consen 170 --AFWN-CENVTVYDSVINGEY-LG----------WNSKNLTLINCTIEGTQ-PL----------CY-CDNLVLENCTMI 223 (277)
T ss_pred --cccc-CCceEEEcceEeeeE-EE----------EEcCCeEEEEeEEeccC-cc----------Ee-ecceEEeCcEee
Confidence 4554 899999999884211 22 34568999999998775 33 46 899999999998
Q ss_pred cCCc
Q 047315 322 NVSN 325 (417)
Q Consensus 322 ~~~~ 325 (417)
+++-
T Consensus 224 ~tdl 227 (277)
T PF12541_consen 224 DTDL 227 (277)
T ss_pred ccee
Confidence 7643
No 23
>COG3420 NosD Nitrous oxidase accessory protein [Inorganic ion transport and metabolism]
Probab=98.81 E-value=1e-06 Score=82.42 Aligned_cols=143 Identities=16% Similarity=0.113 Sum_probs=94.4
Q ss_pred ceeeEEecCeEEcCCCcccccCCCCCCCCCCCCCcceEEEEeecceEEEeeEEecCCcceEEEeceecEEEEeEEEECCC
Q 047315 134 VEGLTLTGGGTFDGRGAKAWPYNGCPTHFNCKLLPTNVKFVAMKKTIVRRITSVNSKSFHIALVECKNFRGSKIKISAPA 213 (417)
Q Consensus 134 ~~nv~I~G~G~idg~g~~~~~~~~~~~~~~~~~~~~~i~~~~~~nv~I~~v~i~n~~~~~i~~~~~~~v~i~n~~i~~~~ 213 (417)
+.++.++| -++-+.|..... .....+.-..++.-.|+...+.. ..+++.+.++.++.++..+|....
T Consensus 76 aP~~~v~G-l~vr~sg~~lp~-----------m~agI~v~~~at~A~Vr~N~l~~-n~~Gi~l~~s~d~~i~~n~i~G~~ 142 (408)
T COG3420 76 APDVIVEG-LTVRGSGRSLPA-----------MDAGIFVGRTATGAVVRHNDLIG-NSFGIYLHGSADVRIEGNTIQGLA 142 (408)
T ss_pred CCCceeee-EEEecCCCCccc-----------ccceEEeccCcccceEEcccccc-cceEEEEeccCceEEEeeEEeecc
Confidence 46777777 455554432111 01223444556677777776665 457999999999999999999854
Q ss_pred C---CCCCCeEEeecceeEEEEeeEEecCCceEEecCCceeEEEEeeEEcCCceEEEcccccCCCCCcEEEEEEEeeEEe
Q 047315 214 N---SPNTDGIHIERSSSVHVSRSHIGTGDDCISVGQGNSEVTIASITCGPGHGISVGSLGRYPNEGDVRGLVVRDSTMT 290 (417)
Q Consensus 214 ~---~~~~DGi~~~~s~nv~I~n~~i~~gdD~i~i~s~s~nv~i~n~~~~~~~gi~igs~~~~~~~~~v~ni~i~n~~~~ 290 (417)
+ .....||+++.+++..|....+.-+.|||..+. |++-.|+++.|.... .|.+ -.+..+..++++...
T Consensus 143 ~~r~~~rGnGI~vyNa~~a~V~~ndisy~rDgIy~~~-S~~~~~~gnr~~~~R---ygvH-----yM~t~~s~i~dn~s~ 213 (408)
T COG3420 143 DLRVAERGNGIYVYNAPGALVVGNDISYGRDGIYSDT-SQHNVFKGNRFRDLR---YGVH-----YMYTNDSRISDNSSR 213 (408)
T ss_pred ccchhhccCceEEEcCCCcEEEcCccccccceEEEcc-cccceecccchhhee---eeEE-----EEeccCcEeeccccc
Confidence 4 245789999999999999999999999999887 667777777765432 2111 012234455555555
Q ss_pred cCceEEEE
Q 047315 291 GTMNGVRI 298 (417)
Q Consensus 291 ~~~~gi~i 298 (417)
+...|+.+
T Consensus 214 ~N~vG~AL 221 (408)
T COG3420 214 DNRVGYAL 221 (408)
T ss_pred CCcceEEE
Confidence 55555554
No 24
>PF13229 Beta_helix: Right handed beta helix region; PDB: 2INV_C 2INU_C 1RU4_A.
Probab=98.77 E-value=1.1e-07 Score=81.89 Aligned_cols=139 Identities=22% Similarity=0.281 Sum_probs=97.1
Q ss_pred eEEEEeecceEEEeeEEecCCcceEEEeceecEEEEeEEEECCCCCCCCCeEEeecceeEEEEeeEEecCCceEEecCCc
Q 047315 170 NVKFVAMKKTIVRRITSVNSKSFHIALVECKNFRGSKIKISAPANSPNTDGIHIERSSSVHVSRSHIGTGDDCISVGQGN 249 (417)
Q Consensus 170 ~i~~~~~~nv~I~~v~i~n~~~~~i~~~~~~~v~i~n~~i~~~~~~~~~DGi~~~~s~nv~I~n~~i~~gdD~i~i~s~s 249 (417)
+|.+....+++|++++|.+....++.+..+..++|++++|.. ...|+++....++++++|.+.....++.+. .+
T Consensus 2 Gi~i~~~~~~~i~~~~i~~~~~~gi~~~~~~~~~i~n~~i~~-----~~~gi~~~~~~~~~i~~~~~~~~~~~i~~~-~~ 75 (158)
T PF13229_consen 2 GISINNGSNVTIRNCTISNNGGDGIHVSGSSNITIENCTISN-----GGYGIYVSGGSNVTISNNTISDNGSGIYVS-GS 75 (158)
T ss_dssp CEEETTCEC-EEESEEEESSSSECEEE-SSCESEEES-EEES-----STTSEEEECCES-EEES-EEES-SEEEECC-S-
T ss_pred EEEEECCcCeEEeeeEEEeCCCeEEEEEcCCCeEEECeEEEC-----CCcEEEEecCCCeEEECeEEEEccceEEEE-ec
Confidence 367778889999999999999999999999999999999997 456899998899999999999887777777 47
Q ss_pred eeEEEEeeEEcCCc--eEEEcccccCCCCCcEEEEEEEeeEEecCc-eEEEEEEecCCCCCeeEEeEEEEeEEEecCC-c
Q 047315 250 SEVTIASITCGPGH--GISVGSLGRYPNEGDVRGLVVRDSTMTGTM-NGVRIKTWANSPGSSAATNMTFENIIMNNVS-N 325 (417)
Q Consensus 250 ~nv~i~n~~~~~~~--gi~igs~~~~~~~~~v~ni~i~n~~~~~~~-~gi~i~~~~~~~~g~~i~ni~~~ni~~~~~~-~ 325 (417)
.+++|++|.+.... |+.+.. ..++++|+++++.+.. .|+.+.... -.+++++++++.+.. .
T Consensus 76 ~~~~i~~~~i~~~~~~gi~~~~--------~~~~~~i~~n~~~~~~~~gi~~~~~~-------~~~~~i~~n~i~~~~~~ 140 (158)
T PF13229_consen 76 SNITIENNRIENNGDYGIYISN--------SSSNVTIENNTIHNNGGSGIYLEGGS-------SPNVTIENNTISNNGGN 140 (158)
T ss_dssp CS-EEES-EEECSSS-SCE-TC--------EECS-EEES-EEECCTTSSCEEEECC---------S-EEECEEEECESSE
T ss_pred CCceecCcEEEcCCCccEEEec--------cCCCEEEEeEEEEeCcceeEEEECCC-------CCeEEEEEEEEEeCcce
Confidence 89999999998653 676632 2456899999999876 778775422 146777777777654 4
Q ss_pred cEEE
Q 047315 326 PIII 329 (417)
Q Consensus 326 ~i~i 329 (417)
++.+
T Consensus 141 gi~~ 144 (158)
T PF13229_consen 141 GIYL 144 (158)
T ss_dssp EEE-
T ss_pred eEEE
Confidence 4433
No 25
>PRK10123 wcaM putative colanic acid biosynthesis protein; Provisional
Probab=98.76 E-value=2.5e-07 Score=84.61 Aligned_cols=228 Identities=19% Similarity=0.305 Sum_probs=125.0
Q ss_pred CceeEEeeeCCccCCCCcccHHHHHHHHHHHhhcCCCeEEEecCCeee--Ee-eeEEecCccCccceEEeEecEEEeecC
Q 047315 42 SSLLVNVKDFGARADGRTDDSKAFEAAWKEACETTGAVTLLVPHGTYL--IG-PIKFAGPCKNVSNITVQMKGYLIASTN 118 (417)
Q Consensus 42 ~~~~~nv~d~GA~gdg~tDdt~aiq~Al~~a~~~~ggg~V~ip~GtY~--~~-~l~l~~~~~~~s~~~l~~~G~l~~~~~ 118 (417)
+..++|+.||- ..|=-++|.+|+.+ +.||++|+|--- +. .+.++ .+-+|++.|.|.....
T Consensus 31 ~~~~vni~dy~-----~~dwiasfkqaf~e------~qtvvvpagl~cenint~ifip------~gktl~v~g~l~gngr 93 (464)
T PRK10123 31 ARQSVNINDYN-----PHDWIASFKQAFSE------GQTVVVPAGLVCDNINTGIFIP------PGKTLHILGSLRGNGR 93 (464)
T ss_pred CCceeehhhcC-----cccHHHHHHHHhcc------CcEEEecCccEecccccceEeC------CCCeEEEEEEeecCCc
Confidence 55699999997 34667889999743 579999999532 22 57777 6678888887776422
Q ss_pred cccccCCCCeEEEcCceeeEEecCeEEcCCCcccccCCCCCCCCCCCCCcceEEEEeecceEEEeeEEecC-CcceEEEe
Q 047315 119 LSEYRFGAGWVEFGGVEGLTLTGGGTFDGRGAKAWPYNGCPTHFNCKLLPTNVKFVAMKKTIVRRITSVNS-KSFHIALV 197 (417)
Q Consensus 119 ~~~~~~~~~~i~~~~~~nv~I~G~G~idg~g~~~~~~~~~~~~~~~~~~~~~i~~~~~~nv~I~~v~i~n~-~~~~i~~~ 197 (417)
+.|+..++|+ +.|+ ..|. .+...+.+ ..++..|+++.+..- |-.-|.+.
T Consensus 94 -------grfvlqdg~q---v~ge----~~g~---------------~hnitldv-rgsdc~ikgiamsgfgpvtqiyig 143 (464)
T PRK10123 94 -------GRFVLQDGSQ---VTGE----EGGS---------------MHNITLDV-RGSDCTIKGLAMSGFGPVTQIYIG 143 (464)
T ss_pred -------eeEEEecCCE---eecC----CCce---------------eeeEEEee-ccCceEEeeeeecccCceeEEEEc
Confidence 2445444433 3331 0000 00111222 233556666665432 22234443
Q ss_pred ce-----ecEEEEeEEEECCCCCCCCCeEEeecceeEEEEeeEEec-CCceEEecC--CceeEEEEe-----eEEcCC--
Q 047315 198 EC-----KNFRGSKIKISAPANSPNTDGIHIERSSSVHVSRSHIGT-GDDCISVGQ--GNSEVTIAS-----ITCGPG-- 262 (417)
Q Consensus 198 ~~-----~~v~i~n~~i~~~~~~~~~DGi~~~~s~nv~I~n~~i~~-gdD~i~i~s--~s~nv~i~n-----~~~~~~-- 262 (417)
+- ++++|+++++....+.--..|+|-.- ..+.|.||+|+. ..|+|-..- +.++++|++ ..|.++
T Consensus 144 gk~prvmrnl~id~itv~~anyailrqgfhnq~-dgaritn~rfs~lqgdaiewnvaindr~ilisdhvie~inctngki 222 (464)
T PRK10123 144 GKNKRVMRNLTIDNLTVSHANYAILRQGFHNQI-IGANITNCKFSDLQGDAIEWNVAINDRDILISDHVIERINCTNGKI 222 (464)
T ss_pred CCCchhhhccEEccEEEeeccHHHHhhhhhhcc-ccceeeccccccccCceEEEEEEecccceeeehheheeecccCCcc
Confidence 33 46777777776543322233444332 456677777765 234432211 134555543 445555
Q ss_pred -ceEEEcccccC-----CCCCcEEEEEEEeeEEecCceEEEEEEecCCCCCeeEEeEEEEeEEEe
Q 047315 263 -HGISVGSLGRY-----PNEGDVRGLVVRDSTMTGTMNGVRIKTWANSPGSSAATNMTFENIIMN 321 (417)
Q Consensus 263 -~gi~igs~~~~-----~~~~~v~ni~i~n~~~~~~~~gi~i~~~~~~~~g~~i~ni~~~ni~~~ 321 (417)
+|+.||-.|.- +....++|..+.|++-.++..=+.+.. + .-+.|+||.-+||+-+
T Consensus 223 nwgigiglagstydn~ype~q~vknfvvanitgs~crqlvhven--g--khfvirnvkaknitpd 283 (464)
T PRK10123 223 NWGIGIGLAGSTYDNNYPEDQAVKNFVVANITGSDCRQLIHVEN--G--KHFVIRNIKAKNITPD 283 (464)
T ss_pred cceeeeeeccccccCCCchhhhhhhEEEEeccCcChhheEEecC--C--cEEEEEeeeccccCCC
Confidence 47777655432 334567888888888877765555521 1 1133677777776543
No 26
>TIGR03808 RR_plus_rpt_1 twin-arg-translocated uncharacterized repeat protein. Members of this protein family have a Sec-independent twin-arginine tranlocation (TAT) signal sequence, which enables tranfer of proteins folded around prosthetic groups to cross the plasma membrane. These proteins have four copies of a repeat of about 23 amino acids that resembles the beta-helix repeat. Beta-helix refers to a structural motif in which successive beta strands wind around to stack parallel in a right-handed helix, as in AlgG and related enzymes of carbohydrate metabolism. The twin-arginine motif suggests that members of this protein family bind some unknown cofactor.
Probab=98.73 E-value=1.6e-06 Score=85.34 Aligned_cols=147 Identities=17% Similarity=0.160 Sum_probs=104.9
Q ss_pred ceEEEEeecceEEEeeEEecCC------cceEEEeceecEEEEeEEEECCCCCCCCCeEEeecceeEEEEeeEEec-CCc
Q 047315 169 TNVKFVAMKKTIVRRITSVNSK------SFHIALVECKNFRGSKIKISAPANSPNTDGIHIERSSSVHVSRSHIGT-GDD 241 (417)
Q Consensus 169 ~~i~~~~~~nv~I~~v~i~n~~------~~~i~~~~~~~v~i~n~~i~~~~~~~~~DGi~~~~s~nv~I~n~~i~~-gdD 241 (417)
..+.-..+++|+|++++|.++. ..+|++..|++++|++++|.+.. .-||++..|+ ..|+++.+.. .+.
T Consensus 107 ~lIiai~A~nVTIsGLtIdGsG~dl~~rdAgI~v~~a~~v~Iedn~L~gsg----~FGI~L~~~~-~~I~~N~I~g~~~~ 181 (455)
T TIGR03808 107 SLLSSEGADGIGLSGLTLDGGGIPLPQRRGLIHCQGGRDVRITDCEITGSG----GNGIWLETVS-GDISGNTITQIAVT 181 (455)
T ss_pred eEEEEecCCCeEEEeeEEEeCCCcccCCCCEEEEccCCceEEEeeEEEcCC----cceEEEEcCc-ceEecceEeccccc
Confidence 3466778999999999999874 33899999999999999999842 3589999888 6666666654 466
Q ss_pred eEEecCCceeEEEEeeEEcCCc--eEEEccc------------------------ccCCCC---CcEEEEEEEeeEEecC
Q 047315 242 CISVGQGNSEVTIASITCGPGH--GISVGSL------------------------GRYPNE---GDVRGLVVRDSTMTGT 292 (417)
Q Consensus 242 ~i~i~s~s~nv~i~n~~~~~~~--gi~igs~------------------------~~~~~~---~~v~ni~i~n~~~~~~ 292 (417)
.|.++. +++.+|+++++.... ||.|... ++++.. ....+++|+++++.++
T Consensus 182 ~I~lw~-S~g~~V~~N~I~g~RD~gi~i~r~~~~~dg~~v~~n~i~~i~a~~gg~~~~GNGI~~~~a~~v~V~gN~I~~~ 260 (455)
T TIGR03808 182 AIVSFD-ALGLIVARNTIIGANDNGIEILRSAIGDDGTIVTDNRIEDIKAGPGGSGQYGNAINAFRAGNVIVRGNRIRNC 260 (455)
T ss_pred eEEEec-cCCCEEECCEEEccCCCCeEEEEeeecCCcceeeccccccccccCCCcCCccccEEEEccCCeEEECCEEecc
Confidence 676664 778888888887653 4665433 222211 1235788888888888
Q ss_pred c-eEEEEEEecCCCCCeeEEeEEEEeEEEecCCc-cEEEE
Q 047315 293 M-NGVRIKTWANSPGSSAATNMTFENIIMNNVSN-PIIID 330 (417)
Q Consensus 293 ~-~gi~i~~~~~~~~g~~i~ni~~~ni~~~~~~~-~i~i~ 330 (417)
. .|+++.+ .+|+.|++.++++..+ ++...
T Consensus 261 r~dgI~~ns---------ss~~~i~~N~~~~~R~~alhym 291 (455)
T TIGR03808 261 DYSAVRGNS---------ASNIQITGNSVSDVREVALYSE 291 (455)
T ss_pred ccceEEEEc---------ccCcEEECcEeeeeeeeEEEEE
Confidence 7 7888743 4777777777777765 55443
No 27
>PF03718 Glyco_hydro_49: Glycosyl hydrolase family 49; InterPro: IPR005192 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is a family of dextranase (3.2.1.11 from EC) and isopullulanase (3.2.1.57 from EC) which are all members of glycoside hydrolase family 49 (GH49 from CAZY). Dextranase hydrolyses alpha-1,6-glycosidic bonds in dextran polymers.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds; PDB: 1X0C_A 1WMR_A 2Z8G_B 1OGM_X 1OGO_X.
Probab=98.69 E-value=5e-06 Score=82.75 Aligned_cols=242 Identities=18% Similarity=0.224 Sum_probs=131.6
Q ss_pred CCeEEEecCCeeeEeeeEEecCccCccceEEeEecEEEeecCc------ccccC-C---------CCeE---EEcCceee
Q 047315 77 GAVTLLVPHGTYLIGPIKFAGPCKNVSNITVQMKGYLIASTNL------SEYRF-G---------AGWV---EFGGVEGL 137 (417)
Q Consensus 77 ggg~V~ip~GtY~~~~l~l~~~~~~~s~~~l~~~G~l~~~~~~------~~~~~-~---------~~~i---~~~~~~nv 137 (417)
...+|||.||.|.-+++.+... . +++.+.+.|+|....=. +.|.. . -.++ ...+.++.
T Consensus 255 n~~~VYlApGAyVkGAf~~~~~-~--~nv~i~G~GVLSGe~Yvy~A~~~e~y~~~s~A~~~~~~~lkm~~~~~~~g~q~~ 331 (582)
T PF03718_consen 255 NTKWVYLAPGAYVKGAFEYTDT-Q--QNVKITGRGVLSGEQYVYEADTEESYLHLSGAVKCHRESLKMLWHISANGGQTL 331 (582)
T ss_dssp T--EEEE-TTEEEES-EEE----S--SEEEEESSSEEE-TTS-TTBBCCCTTSB-SSC---TTTB--SEEECS-SSSEEE
T ss_pred CccEEEEcCCcEEEEEEEEccC-C--ceEEEEeeEEEcCcceeEeccCCCCccccccccccchhhhhhhhhhccCCcceE
Confidence 3469999999999999877622 2 88999999998874211 12220 0 0223 24456788
Q ss_pred EEecCeEEcCCCcccccCCCCCCCCCCCCCcceEEEEeec----ceEEEeeEEecCCcc---eEEEeceecEEEEeEEEE
Q 047315 138 TLTGGGTFDGRGAKAWPYNGCPTHFNCKLLPTNVKFVAMK----KTIVRRITSVNSKSF---HIALVECKNFRGSKIKIS 210 (417)
Q Consensus 138 ~I~G~G~idg~g~~~~~~~~~~~~~~~~~~~~~i~~~~~~----nv~I~~v~i~n~~~~---~i~~~~~~~v~i~n~~i~ 210 (417)
.+.| -+|.... + +.+.+++-. +..|+|.+...+-.| |+.+. .+-+|+||.+.
T Consensus 332 ~~~G-iTI~~pP--~----------------~Sm~l~g~~~~~~~~~i~nyKqVGaW~~qtDGi~ly--~nS~i~dcF~h 390 (582)
T PF03718_consen 332 TCEG-ITINDPP--F----------------HSMDLYGNENDKFSMNISNYKQVGAWYFQTDGIELY--PNSTIRDCFIH 390 (582)
T ss_dssp EEES--EEE--S--S-----------------SEEEESSSGGGEEEEEEEEEEE---CTT----B----TT-EEEEEEEE
T ss_pred EEEe-eEecCCC--c----------------ceEEecCCccccccceeeceeeeeeEEeccCCcccc--CCCeeeeeEEE
Confidence 8888 4444322 2 236666444 478999999876444 67665 56678999999
Q ss_pred CCCCCCCCCeEEeecceeEEEEeeEEecCCc--eEEecC---CceeEEEEeeEEcC----------CceEEEcccccC--
Q 047315 211 APANSPNTDGIHIERSSSVHVSRSHIGTGDD--CISVGQ---GNSEVTIASITCGP----------GHGISVGSLGRY-- 273 (417)
Q Consensus 211 ~~~~~~~~DGi~~~~s~nv~I~n~~i~~gdD--~i~i~s---~s~nv~i~n~~~~~----------~~gi~igs~~~~-- 273 (417)
. +.|+|.+.. .++.|++|++...+. .+.++- ..+||.|+|+.+-. ..+| +++...+
T Consensus 391 ~-----nDD~iKlYh-S~v~v~~~ViWk~~Ngpiiq~GW~pr~isnv~veni~IIh~r~~~~~~~~n~~I-~~ss~~y~~ 463 (582)
T PF03718_consen 391 V-----NDDAIKLYH-SNVSVSNTVIWKNENGPIIQWGWTPRNISNVSVENIDIIHNRWIWHNNYVNTAI-LGSSPFYDD 463 (582)
T ss_dssp E-----SS-SEE--S-TTEEEEEEEEEE-SSS-SEE--CS---EEEEEEEEEEEEE---SSGGCTTT-EC-EEE--BTTS
T ss_pred e-----cCchhheee-cCcceeeeEEEecCCCCeEEeeccccccCceEEeeeEEEeeeeecccCCCCcee-Eeccccccc
Confidence 7 678998887 799999999986432 233322 24799999987621 1132 2222222
Q ss_pred ---CCC----CcEEEEEEEeeEEecCceE-EEEEEecCCCCCeeEEeEEEEeEEEecCC-----cc-EEEEeeeCCCCCC
Q 047315 274 ---PNE----GDVRGLVVRDSTMTGTMNG-VRIKTWANSPGSSAATNMTFENIIMNNVS-----NP-IIIDQAYCPFTSC 339 (417)
Q Consensus 274 ---~~~----~~v~ni~i~n~~~~~~~~g-i~i~~~~~~~~g~~i~ni~~~ni~~~~~~-----~~-i~i~~~~~~~~~~ 339 (417)
... ..+++++|+|+++++...+ ++|.... . ..|+.++|+.++... .. -.++..+....
T Consensus 464 ~~s~~~adp~~ti~~~~~~nv~~EG~~~~l~ri~plq-----n-~~nl~ikN~~~~~w~~~~~~~~~s~~k~~~~~~~-- 535 (582)
T PF03718_consen 464 MASTKTADPSTTIRNMTFSNVRCEGMCPCLFRIYPLQ-----N-YDNLVIKNVHFESWNGLDITSQVSGLKAYYNMAN-- 535 (582)
T ss_dssp -SSS--BEEEEEEEEEEEEEEEEECCE-ECEEE--SE-----E-EEEEEEEEEEECEET-CGCSTT-EEE---CCTTT--
T ss_pred ccCCCCCCcccceeeEEEEeEEEecccceeEEEeecC-----C-CcceEEEEeecccccCcccccceeeccccccccc--
Confidence 011 2368999999999996654 7886433 3 588889999888432 11 12222222111
Q ss_pred CCCCCCceeEeeEEEEeEEEEe
Q 047315 340 PTKPPSRVKLSDIYFKNIRGTS 361 (417)
Q Consensus 340 ~~~~~~~~~v~nI~~~ni~~~~ 361 (417)
.......+|.|+|+++..
T Consensus 536 ----~~~~~~~gi~i~N~tVgg 553 (582)
T PF03718_consen 536 ----NKQNDTMGIIIENWTVGG 553 (582)
T ss_dssp ------B--EEEEEEEEEEETT
T ss_pred ----cccccccceEEEeEEECC
Confidence 113357888888888755
No 28
>PF13229 Beta_helix: Right handed beta helix region; PDB: 2INV_C 2INU_C 1RU4_A.
Probab=98.65 E-value=4.8e-07 Score=77.80 Aligned_cols=138 Identities=20% Similarity=0.278 Sum_probs=96.2
Q ss_pred EEEcCceeeEEecCeEEcCCCcccccCCCCCCCCCCCCCcceEEEEeecceEEEeeEEecCCcceEEEeceecEEEEeEE
Q 047315 129 VEFGGVEGLTLTGGGTFDGRGAKAWPYNGCPTHFNCKLLPTNVKFVAMKKTIVRRITSVNSKSFHIALVECKNFRGSKIK 208 (417)
Q Consensus 129 i~~~~~~nv~I~G~G~idg~g~~~~~~~~~~~~~~~~~~~~~i~~~~~~nv~I~~v~i~n~~~~~i~~~~~~~v~i~n~~ 208 (417)
|.+.+..+++|++ .+|...+ ..+|.+..+..++|++.+|.+ ...++.+....++.+++++
T Consensus 3 i~i~~~~~~~i~~-~~i~~~~------------------~~gi~~~~~~~~~i~n~~i~~-~~~gi~~~~~~~~~i~~~~ 62 (158)
T PF13229_consen 3 ISINNGSNVTIRN-CTISNNG------------------GDGIHVSGSSNITIENCTISN-GGYGIYVSGGSNVTISNNT 62 (158)
T ss_dssp EEETTCEC-EEES-EEEESSS------------------SECEEE-SSCESEEES-EEES-STTSEEEECCES-EEES-E
T ss_pred EEEECCcCeEEee-eEEEeCC------------------CeEEEEEcCCCeEEECeEEEC-CCcEEEEecCCCeEEECeE
Confidence 4555667777777 5555432 356999999999999999999 7789999999999999999
Q ss_pred EECCCCCCCCCeEEeecceeEEEEeeEEecCCc-eEEecCCceeEEEEeeEEcCC--ceEEEcccccCCCCCcEEEEEEE
Q 047315 209 ISAPANSPNTDGIHIERSSSVHVSRSHIGTGDD-CISVGQGNSEVTIASITCGPG--HGISVGSLGRYPNEGDVRGLVVR 285 (417)
Q Consensus 209 i~~~~~~~~~DGi~~~~s~nv~I~n~~i~~gdD-~i~i~s~s~nv~i~n~~~~~~--~gi~igs~~~~~~~~~v~ni~i~ 285 (417)
+.... .|+.+..+.+++|++|.+....+ +|.+...+++++|++|+|... .|+.+... .-.+++|+
T Consensus 63 ~~~~~-----~~i~~~~~~~~~i~~~~i~~~~~~gi~~~~~~~~~~i~~n~~~~~~~~gi~~~~~-------~~~~~~i~ 130 (158)
T PF13229_consen 63 ISDNG-----SGIYVSGSSNITIENNRIENNGDYGIYISNSSSNVTIENNTIHNNGGSGIYLEGG-------SSPNVTIE 130 (158)
T ss_dssp EES-S-----EEEECCS-CS-EEES-EEECSSS-SCE-TCEECS-EEES-EEECCTTSSCEEEEC-------C--S-EEE
T ss_pred EEEcc-----ceEEEEecCCceecCcEEEcCCCccEEEeccCCCEEEEeEEEEeCcceeEEEECC-------CCCeEEEE
Confidence 99733 78999999999999999998654 898873267999999999865 46777433 13368889
Q ss_pred eeEEecCc-eEEEE
Q 047315 286 DSTMTGTM-NGVRI 298 (417)
Q Consensus 286 n~~~~~~~-~gi~i 298 (417)
+|++.+.. .|+.+
T Consensus 131 ~n~i~~~~~~gi~~ 144 (158)
T PF13229_consen 131 NNTISNNGGNGIYL 144 (158)
T ss_dssp CEEEECESSEEEE-
T ss_pred EEEEEeCcceeEEE
Confidence 99998865 78877
No 29
>PF07602 DUF1565: Protein of unknown function (DUF1565); InterPro: IPR011459 These proteins share a region of homology in their N termini, and are found in several phylogenetically diverse bacteria and in the archaeon Methanosarcina acetivorans. Some of these proteins also contain characterised domains such as IPR001119 from INTERPRO (e.g. Q8YWJ6 from SWISSPROT) and IPR005084 from INTERPRO (e.g. Q9FBS2 from SWISSPROT).
Probab=98.56 E-value=3.7e-06 Score=77.37 Aligned_cols=168 Identities=19% Similarity=0.238 Sum_probs=97.8
Q ss_pred HHHHHHHHHHhhcCCCeEEEecCCeeeEe-----eeEEecCccCccceEEeEecEEEeecCcccccCCCCeEEEcCceee
Q 047315 63 KAFEAAWKEACETTGAVTLLVPHGTYLIG-----PIKFAGPCKNVSNITVQMKGYLIASTNLSEYRFGAGWVEFGGVEGL 137 (417)
Q Consensus 63 ~aiq~Al~~a~~~~ggg~V~ip~GtY~~~-----~l~l~~~~~~~s~~~l~~~G~l~~~~~~~~~~~~~~~i~~~~~~nv 137 (417)
+.|++||+.| ..|.+|+|-||+|.-. ||.++ +.++|+++..-+.. ..+
T Consensus 16 ~Ti~~A~~~a---~~g~~i~l~~GtY~~~~ge~fPi~i~------~gVtl~G~~~~kG~------------------~~i 68 (246)
T PF07602_consen 16 KTITKALQAA---QPGDTIQLAPGTYSEATGETFPIIIK------PGVTLIGNESNKGQ------------------IDI 68 (246)
T ss_pred HHHHHHHHhC---CCCCEEEECCceeccccCCcccEEec------CCeEEeecccCCCc------------------ceE
Confidence 4799998654 5578999999999864 57787 88888776421110 122
Q ss_pred EEecCe---EEcCCCcccccCCCCCCCCCCCCCcceEEEEeecceEEEeeEEecC---CcceEEEeceecEEEEeEEEEC
Q 047315 138 TLTGGG---TFDGRGAKAWPYNGCPTHFNCKLLPTNVKFVAMKKTIVRRITSVNS---KSFHIALVECKNFRGSKIKISA 211 (417)
Q Consensus 138 ~I~G~G---~idg~g~~~~~~~~~~~~~~~~~~~~~i~~~~~~nv~I~~v~i~n~---~~~~i~~~~~~~v~i~n~~i~~ 211 (417)
.+.|.+ +|++.+... ....+.+....+.+|+++++.|+ ...++.+.++ +.+|+|++|..
T Consensus 69 l~~g~~~~~~I~g~~~~~--------------~~qn~tI~~~~~~~i~GvtItN~n~~~g~Gi~Iess-~~tI~Nntf~~ 133 (246)
T PF07602_consen 69 LITGGGTGPTISGGGPDL--------------SGQNVTIILANNATISGVTITNPNIARGTGIWIESS-SPTIANNTFTN 133 (246)
T ss_pred EecCCceEEeEeccCccc--------------cceeEEEEecCCCEEEEEEEEcCCCCcceEEEEecC-CcEEEeeEEEC
Confidence 222211 233322100 02346677788888999998887 2335666555 66777777765
Q ss_pred CCCCCCCCeEEeecceeEEEEeeEEecCCceEEecCCceeEEEEeeEEcCC-ceEEEcccccCCCCCcEEEEEEEeeEEe
Q 047315 212 PANSPNTDGIHIERSSSVHVSRSHIGTGDDCISVGQGNSEVTIASITCGPG-HGISVGSLGRYPNEGDVRGLVVRDSTMT 290 (417)
Q Consensus 212 ~~~~~~~DGi~~~~s~nv~I~n~~i~~gdD~i~i~s~s~nv~i~n~~~~~~-~gi~igs~~~~~~~~~v~ni~i~n~~~~ 290 (417)
. ..+||.+.+.. .+....+.+|+++.+... .|+++... ...++ ..|+|+.++
T Consensus 134 ~----~~~GI~v~g~~-----------------~~~~i~~~vI~GN~~~~~~~Gi~i~~~-----~~~~~-n~I~NN~I~ 186 (246)
T PF07602_consen 134 N----GREGIFVTGTS-----------------ANPGINGNVISGNSIYFNKTGISISDN-----AAPVE-NKIENNIIE 186 (246)
T ss_pred C----ccccEEEEeee-----------------cCCcccceEeecceEEecCcCeEEEcc-----cCCcc-ceeeccEEE
Confidence 2 23454442211 112234566777766643 47777432 12233 356888888
Q ss_pred cCceEEEEE
Q 047315 291 GTMNGVRIK 299 (417)
Q Consensus 291 ~~~~gi~i~ 299 (417)
+...||.+.
T Consensus 187 ~N~~Gi~~~ 195 (246)
T PF07602_consen 187 NNNIGIVAI 195 (246)
T ss_pred eCCcCeEee
Confidence 777787654
No 30
>PF12541 DUF3737: Protein of unknown function (DUF3737) ; InterPro: IPR022208 This family of proteins is found in bacteria, archaea and eukaryotes. Proteins in this family are typically between 281 and 297 amino acids in length.
Probab=98.56 E-value=3.4e-06 Score=76.76 Aligned_cols=13 Identities=0% Similarity=0.044 Sum_probs=7.3
Q ss_pred ecceeEEEEeeEE
Q 047315 224 ERSSSVHVSRSHI 236 (417)
Q Consensus 224 ~~s~nv~I~n~~i 236 (417)
+.|++|+++|+.+
T Consensus 115 W~c~~i~l~nv~~ 127 (277)
T PF12541_consen 115 WNCRGIKLKNVQA 127 (277)
T ss_pred EEeCCeEEEeEEE
Confidence 4455555555555
No 31
>PF14592 Chondroitinas_B: Chondroitinase B; PDB: 1OFM_A 1OFL_A 1DBO_A 1DBG_A.
Probab=98.55 E-value=1.5e-05 Score=78.44 Aligned_cols=33 Identities=24% Similarity=0.306 Sum_probs=22.0
Q ss_pred cHHHHHHHHHHHhhcCCCeEEEecCCeeeEeeeEEe
Q 047315 61 DSKAFEAAWKEACETTGAVTLLVPHGTYLIGPIKFA 96 (417)
Q Consensus 61 dt~aiq~Al~~a~~~~ggg~V~ip~GtY~~~~l~l~ 96 (417)
+.++||+||++| ..|.+|+++.|+|.-..|.+.
T Consensus 3 s~~~lq~Ai~~a---~pGD~I~L~~Gty~~~~i~~~ 35 (425)
T PF14592_consen 3 SVAELQSAIDNA---KPGDTIVLADGTYKDVEIVFK 35 (425)
T ss_dssp SHHHHHHHHHH-----TT-EEEE-SEEEET-EEEE-
T ss_pred CHHHHHHHHHhC---CCCCEEEECCceeecceEEEE
Confidence 568999998765 568899999999983355554
No 32
>COG3866 PelB Pectate lyase [Carbohydrate transport and metabolism]
Probab=98.53 E-value=1.5e-05 Score=73.77 Aligned_cols=62 Identities=19% Similarity=0.168 Sum_probs=37.9
Q ss_pred EEEcCceeeEEecCe---EEcCCCcccccCCCCCCCCCCCCCcceEEEEeecceEEEeeEEecCC-----cceEEE-ece
Q 047315 129 VEFGGVEGLTLTGGG---TFDGRGAKAWPYNGCPTHFNCKLLPTNVKFVAMKKTIVRRITSVNSK-----SFHIAL-VEC 199 (417)
Q Consensus 129 i~~~~~~nv~I~G~G---~idg~g~~~~~~~~~~~~~~~~~~~~~i~~~~~~nv~I~~v~i~n~~-----~~~i~~-~~~ 199 (417)
+.+..+.|.+|.|.| ++.|- .|.+..+.||.|+|++|...+ ...|.+ ..+
T Consensus 95 ~~iki~sNkTivG~g~~a~~~g~---------------------gl~i~~a~NVIirNltf~~~~~~d~~~D~Isi~~~~ 153 (345)
T COG3866 95 ITIKIGSNKTIVGSGADATLVGG---------------------GLKIRDAGNVIIRNLTFEGFYQGDPNYDAISIYDDG 153 (345)
T ss_pred EEEeeccccEEEeeccccEEEec---------------------eEEEEeCCcEEEEeeEEEeeccCCCCCCcEEeccCC
Confidence 666667888888854 33332 367777888888888887665 234444 344
Q ss_pred ecEEEEeEEEEC
Q 047315 200 KNFRGSKIKISA 211 (417)
Q Consensus 200 ~~v~i~n~~i~~ 211 (417)
+|+.|++|++..
T Consensus 154 ~nIWIDH~tf~~ 165 (345)
T COG3866 154 HNIWIDHNTFSG 165 (345)
T ss_pred eEEEEEeeEecc
Confidence 444444444444
No 33
>PLN02480 Probable pectinesterase
Probab=98.49 E-value=6.3e-05 Score=72.81 Aligned_cols=201 Identities=12% Similarity=0.088 Sum_probs=115.4
Q ss_pred ccHHHHHHHHHHHhhcC-CCeEEEecCCeeeEeeeEEecCccCccceEEeEecEEEeecCcccccCCCCeEEEcCceeeE
Q 047315 60 DDSKAFEAAWKEACETT-GAVTLLVPHGTYLIGPIKFAGPCKNVSNITVQMKGYLIASTNLSEYRFGAGWVEFGGVEGLT 138 (417)
Q Consensus 60 Ddt~aiq~Al~~a~~~~-ggg~V~ip~GtY~~~~l~l~~~~~~~s~~~l~~~G~l~~~~~~~~~~~~~~~i~~~~~~nv~ 138 (417)
.|-..||+||+++-... ..-+|+|.+|+|. ..+.++.. | .+++|.+++ .+...
T Consensus 58 g~f~TIQ~AIdaap~~~~~~~~I~Ik~GvY~-E~V~I~~~-k--p~ItL~G~g----------------------~~~Tv 111 (343)
T PLN02480 58 GDFTSVQSAIDAVPVGNSEWIIVHLRKGVYR-EKVHIPEN-K--PFIFMRGNG----------------------KGRTS 111 (343)
T ss_pred CCcccHHHHHhhCccCCCceEEEEEcCcEEE-EEEEECCC-C--ceEEEEecC----------------------CCCeE
Confidence 46889999987542211 1225889999998 55555310 1 345555543 01122
Q ss_pred EecCeEEcCCCcccccCCCCCCCCCCCCCcceEEEEeecceEEEeeEEecCCc---------ceEEE-eceecEEEEeEE
Q 047315 139 LTGGGTFDGRGAKAWPYNGCPTHFNCKLLPTNVKFVAMKKTIVRRITSVNSKS---------FHIAL-VECKNFRGSKIK 208 (417)
Q Consensus 139 I~G~G~idg~g~~~~~~~~~~~~~~~~~~~~~i~~~~~~nv~I~~v~i~n~~~---------~~i~~-~~~~~v~i~n~~ 208 (417)
|.+ +... ..+ . ........+++++++|++|+|+.. .++.+ ..++++.+.||+
T Consensus 112 I~~------~~~~-------~~~----~-~saTvtV~a~~f~a~nLTf~Nta~~g~~~~~~~QAVAl~v~gDra~f~~c~ 173 (343)
T PLN02480 112 IVW------SQSS-------SDN----A-ASATFTVEAPHFVAFGISIRNDAPTGMAFTSENQSVAAFVGADKVAFYHCA 173 (343)
T ss_pred EEc------cccc-------cCC----C-CceEEEEECCCEEEEeeEEEecCCCCCCCCCCCceEEEEecCCcEEEEeeE
Confidence 222 1100 000 0 122334467899999999999821 24444 467889999999
Q ss_pred EECCCCCCCCCeEEeecceeEEEEeeEEecCCceEEecCCceeEEEEeeEEcCC-------ce-EEEcccccCCCCCcEE
Q 047315 209 ISAPANSPNTDGIHIERSSSVHVSRSHIGTGDDCISVGQGNSEVTIASITCGPG-------HG-ISVGSLGRYPNEGDVR 280 (417)
Q Consensus 209 i~~~~~~~~~DGi~~~~s~nv~I~n~~i~~gdD~i~i~s~s~nv~i~n~~~~~~-------~g-i~igs~~~~~~~~~v~ 280 (417)
+.+.. |-+... ...-.++||.|...=|-|- |.-...+++|++..- .| +.-.+ + ....-.
T Consensus 174 f~G~Q-----DTLy~~-~gR~yf~~C~IeG~VDFIF---G~g~a~fe~C~i~s~~~~~~~~~G~ITA~~--r--~~~~~~ 240 (343)
T PLN02480 174 FYSTH-----NTLFDY-KGRHYYHSCYIQGSIDFIF---GRGRSIFHNCEIFVIADRRVKIYGSITAHN--R--ESEDNS 240 (343)
T ss_pred Eeccc-----ceeEeC-CCCEEEEeCEEEeeeeEEc---cceeEEEEccEEEEecCCCCCCceEEEcCC--C--CCCCCC
Confidence 98743 333322 3467889999987655442 345788889888531 23 22211 1 112334
Q ss_pred EEEEEeeEEecCceEEEEEEecCCCCCeeEEeEEEEeEEEecC
Q 047315 281 GLVVRDSTMTGTMNGVRIKTWANSPGSSAATNMTFENIIMNNV 323 (417)
Q Consensus 281 ni~i~n~~~~~~~~gi~i~~~~~~~~g~~i~ni~~~ni~~~~~ 323 (417)
...|.||++.+.. ...+ |++..- -..++|.|..|.+.
T Consensus 241 GfvF~~C~i~g~g-~~yL----GRPW~~-ya~vVf~~t~l~~~ 277 (343)
T PLN02480 241 GFVFIKGKVYGIG-EVYL----GRAKGA-YSRVIFAKTYLSKT 277 (343)
T ss_pred EEEEECCEEcccC-ceee----ecCCCC-cceEEEEecccCCe
Confidence 6788999987643 2333 222222 47888888888653
No 34
>PF05048 NosD: Periplasmic copper-binding protein (NosD); InterPro: IPR007742 Bacterial nitrous oxide (N(2)O) reductase is the terminal oxidoreductase of a respiratory process that generates dinitrogen from N(2)O. To attain its functional state, the enzyme is subjected to a maturation process which involves the protein-driven synthesis of a unique copper-sulphur cluster and metallation of the binuclear Cu(A) site in the periplasm. NosD is a periplasmic protein which is thought to insert copper into the exported reductase apoenzyme [].
Probab=98.47 E-value=5.6e-06 Score=76.81 Aligned_cols=83 Identities=23% Similarity=0.168 Sum_probs=42.2
Q ss_pred EEEEeecceEEEeeEEecCCcceEEEeceecEEEEeEEEECCCCCCCCCeEEeecceeEEEEeeEEecCCceEEecCCce
Q 047315 171 VKFVAMKKTIVRRITSVNSKSFHIALVECKNFRGSKIKISAPANSPNTDGIHIERSSSVHVSRSHIGTGDDCISVGQGNS 250 (417)
Q Consensus 171 i~~~~~~nv~I~~v~i~n~~~~~i~~~~~~~v~i~n~~i~~~~~~~~~DGi~~~~s~nv~I~n~~i~~gdD~i~i~s~s~ 250 (417)
+.+..+.+++|++.++.+. ..++++..+++++|+++++.. +..||.+..+.+.+|+++.+.....||.+.. +.
T Consensus 38 i~~~~s~~~~I~~n~i~~~-~~GI~~~~s~~~~i~~n~i~~-----n~~Gi~l~~s~~~~I~~N~i~~n~~GI~l~~-s~ 110 (236)
T PF05048_consen 38 IYVENSDNNTISNNTISNN-RYGIHLMGSSNNTIENNTISN-----NGYGIYLMGSSNNTISNNTISNNGYGIYLYG-SS 110 (236)
T ss_pred EEEEEcCCeEEEeeEEECC-CeEEEEEccCCCEEEeEEEEc-----cCCCEEEEcCCCcEEECCEecCCCceEEEee-CC
Confidence 4455555555555555544 445555555555555555554 2245555554444555555555444554443 34
Q ss_pred eEEEEeeEEc
Q 047315 251 EVTIASITCG 260 (417)
Q Consensus 251 nv~i~n~~~~ 260 (417)
+.+|+++++.
T Consensus 111 ~~~I~~N~i~ 120 (236)
T PF05048_consen 111 NNTISNNTIS 120 (236)
T ss_pred ceEEECcEEe
Confidence 4555555554
No 35
>PF05048 NosD: Periplasmic copper-binding protein (NosD); InterPro: IPR007742 Bacterial nitrous oxide (N(2)O) reductase is the terminal oxidoreductase of a respiratory process that generates dinitrogen from N(2)O. To attain its functional state, the enzyme is subjected to a maturation process which involves the protein-driven synthesis of a unique copper-sulphur cluster and metallation of the binuclear Cu(A) site in the periplasm. NosD is a periplasmic protein which is thought to insert copper into the exported reductase apoenzyme [].
Probab=98.47 E-value=5.2e-06 Score=77.01 Aligned_cols=135 Identities=21% Similarity=0.178 Sum_probs=107.6
Q ss_pred ceEEEEeecceEEEeeEEecCCcceEEEeceecEEEEeEEEECCCCCCCCCeEEeecceeEEEEeeEEecCCceEEecCC
Q 047315 169 TNVKFVAMKKTIVRRITSVNSKSFHIALVECKNFRGSKIKISAPANSPNTDGIHIERSSSVHVSRSHIGTGDDCISVGQG 248 (417)
Q Consensus 169 ~~i~~~~~~nv~I~~v~i~n~~~~~i~~~~~~~v~i~n~~i~~~~~~~~~DGi~~~~s~nv~I~n~~i~~gdD~i~i~s~ 248 (417)
..+.+.++++..|++.++.+. ..++.+..+.+++|+++++.. ...||++..+++++|+++.+.....||.+..
T Consensus 14 ~Gi~l~~~~~~~i~~n~i~~~-~~gi~~~~s~~~~I~~n~i~~-----~~~GI~~~~s~~~~i~~n~i~~n~~Gi~l~~- 86 (236)
T PF05048_consen 14 NGIYLWNSSNNSIENNTISNS-RDGIYVENSDNNTISNNTISN-----NRYGIHLMGSSNNTIENNTISNNGYGIYLMG- 86 (236)
T ss_pred CcEEEEeCCCCEEEcCEEEeC-CCEEEEEEcCCeEEEeeEEEC-----CCeEEEEEccCCCEEEeEEEEccCCCEEEEc-
Confidence 348888899999999999764 467799999999999999997 4679999999999999999999889999987
Q ss_pred ceeEEEEeeEEcCCc-eEEEcccccCCCCCcEEEEEEEeeEEecCceEEEEEEecCCCCCeeEEeEEEEeEEEecC-Ccc
Q 047315 249 NSEVTIASITCGPGH-GISVGSLGRYPNEGDVRGLVVRDSTMTGTMNGVRIKTWANSPGSSAATNMTFENIIMNNV-SNP 326 (417)
Q Consensus 249 s~nv~i~n~~~~~~~-gi~igs~~~~~~~~~v~ni~i~n~~~~~~~~gi~i~~~~~~~~g~~i~ni~~~ni~~~~~-~~~ 326 (417)
+.+.+|+++++.... ||.+.. ..+.+|+++++.+...||.+.. ..+.++++.++.+. ..+
T Consensus 87 s~~~~I~~N~i~~n~~GI~l~~---------s~~~~I~~N~i~~~~~GI~l~~---------s~~n~I~~N~i~~n~~~G 148 (236)
T PF05048_consen 87 SSNNTISNNTISNNGYGIYLYG---------SSNNTISNNTISNNGYGIYLSS---------SSNNTITGNTISNNTDYG 148 (236)
T ss_pred CCCcEEECCEecCCCceEEEee---------CCceEEECcEEeCCCEEEEEEe---------CCCCEEECeEEeCCCccc
Confidence 445599999997654 776632 3347899999998888999853 24556666677666 567
Q ss_pred EE
Q 047315 327 II 328 (417)
Q Consensus 327 i~ 328 (417)
+.
T Consensus 149 i~ 150 (236)
T PF05048_consen 149 IY 150 (236)
T ss_pred eE
Confidence 66
No 36
>COG3866 PelB Pectate lyase [Carbohydrate transport and metabolism]
Probab=98.45 E-value=3.2e-05 Score=71.64 Aligned_cols=122 Identities=10% Similarity=0.116 Sum_probs=95.5
Q ss_pred EEEEeecceEEEeeEEec-CCcceEEEeceecEEEEeEEEECCCCC-CCCCeEEe-ecceeEEEEeeEEec---------
Q 047315 171 VKFVAMKKTIVRRITSVN-SKSFHIALVECKNFRGSKIKISAPANS-PNTDGIHI-ERSSSVHVSRSHIGT--------- 238 (417)
Q Consensus 171 i~~~~~~nv~I~~v~i~n-~~~~~i~~~~~~~v~i~n~~i~~~~~~-~~~DGi~~-~~s~nv~I~n~~i~~--------- 238 (417)
+.+.-+.|++|.++.-.. .-++++.+.+..||.|+|++|+..... ++-|+|.+ ..++||.|++|.|..
T Consensus 95 ~~iki~sNkTivG~g~~a~~~g~gl~i~~a~NVIirNltf~~~~~~d~~~D~Isi~~~~~nIWIDH~tf~~~s~~~~~~h 174 (345)
T COG3866 95 ITIKIGSNKTIVGSGADATLVGGGLKIRDAGNVIIRNLTFEGFYQGDPNYDAISIYDDGHNIWIDHNTFSGGSYNASGSH 174 (345)
T ss_pred EEEeeccccEEEeeccccEEEeceEEEEeCCcEEEEeeEEEeeccCCCCCCcEEeccCCeEEEEEeeEeccccccccccC
Confidence 888999999999887433 247899999999999999999974421 23589999 789999999999987
Q ss_pred CCceEEecCCceeEEEEeeEEcCCc-eEEEcccccCCCCCcEEEEEEEeeEEecC
Q 047315 239 GDDCISVGQGNSEVTIASITCGPGH-GISVGSLGRYPNEGDVRGLVVRDSTMTGT 292 (417)
Q Consensus 239 gdD~i~i~s~s~nv~i~n~~~~~~~-gi~igs~~~~~~~~~v~ni~i~n~~~~~~ 292 (417)
+|-.+.++-++..|+|++|+|.... +.-+|+.........-.+|++.+|.|.+.
T Consensus 175 ~DGl~Dik~~AnyITiS~n~fhdh~Kssl~G~sD~~~~~~~~~kvT~hhNyFkn~ 229 (345)
T COG3866 175 GDGLVDIKKDANYITISYNKFHDHDKSSLLGSSDSSNYDDGKYKVTIHHNYFKNL 229 (345)
T ss_pred CCccEEeccCCcEEEEEeeeeecCCeeeeeccCCcccccCCceeEEEeccccccc
Confidence 2445678888899999999998765 67777763321224456899999999885
No 37
>smart00656 Amb_all Amb_all domain.
Probab=98.42 E-value=1.9e-05 Score=70.56 Aligned_cols=100 Identities=16% Similarity=0.189 Sum_probs=74.5
Q ss_pred ceEEEeceecEEEEeEEEECCCCC--CCCCeEEeecceeEEEEeeEEecC----------CceEEecCCceeEEEEeeEE
Q 047315 192 FHIALVECKNFRGSKIKISAPANS--PNTDGIHIERSSSVHVSRSHIGTG----------DDCISVGQGNSEVTIASITC 259 (417)
Q Consensus 192 ~~i~~~~~~~v~i~n~~i~~~~~~--~~~DGi~~~~s~nv~I~n~~i~~g----------dD~i~i~s~s~nv~i~n~~~ 259 (417)
.++.+..++||.|+|++|+..... .+.|+|.+.++++|.|.+|.|..+ |..+.++.++.+|+|++|.|
T Consensus 32 ~gl~i~~~~NVIirnl~i~~~~~~~~~~~D~i~~~~~~~VwIDHct~s~~~~~~~~~~~~D~~~di~~~s~~vTvs~~~f 111 (190)
T smart00656 32 GGLTIKSVSNVIIRNLTIHDPKPVYGSDGDAISIDGSSNVWIDHVSLSGCTVTGFGDDTYDGLIDIKNGSTYVTISNNYF 111 (190)
T ss_pred eEEEEEecceEEEeCCEEECCccCCCCCCCEEEEeCCCeEEEEccEeEcceeccCCCCCCCccEEECcccccEEEECceE
Confidence 455566677888888888875431 367999999999999999999986 44567787889999999999
Q ss_pred cCCc-eEEEcccccCCCCCcEEEEEEEeeEEecC
Q 047315 260 GPGH-GISVGSLGRYPNEGDVRGLVVRDSTMTGT 292 (417)
Q Consensus 260 ~~~~-gi~igs~~~~~~~~~v~ni~i~n~~~~~~ 292 (417)
..-+ +.-+|+.... ......+|++.++.+.+.
T Consensus 112 ~~h~~~~liG~~d~~-~~~~~~~vT~h~N~~~~~ 144 (190)
T smart00656 112 HNHWKVMLLGHSDSD-TDDGKMRVTIAHNYFGNL 144 (190)
T ss_pred ecCCEEEEEccCCCc-cccccceEEEECcEEcCc
Confidence 7654 6778764221 112355899999999764
No 38
>PLN02634 probable pectinesterase
Probab=98.30 E-value=0.00035 Score=67.73 Aligned_cols=206 Identities=17% Similarity=0.140 Sum_probs=112.6
Q ss_pred cHHHHHHHHHHHhhc-CCCeEEEecCCeeeEeeeEEecCccCccceEEeEec---EEEeecCcccccCCCCeEEEcCcee
Q 047315 61 DSKAFEAAWKEACET-TGAVTLLVPHGTYLIGPIKFAGPCKNVSNITVQMKG---YLIASTNLSEYRFGAGWVEFGGVEG 136 (417)
Q Consensus 61 dt~aiq~Al~~a~~~-~ggg~V~ip~GtY~~~~l~l~~~~~~~s~~~l~~~G---~l~~~~~~~~~~~~~~~i~~~~~~n 136 (417)
|-..||+||+++-.. ...-+|+|.||+|.- .+.++. .| .+++|+++| ++.--.+. ..+
T Consensus 67 df~TIQaAIda~P~~~~~r~vI~Ik~GvY~E-kV~Ip~-~k--~~ItL~G~g~~~TiIt~~~~--------------a~~ 128 (359)
T PLN02634 67 DFRSVQDAVDSVPKNNTMSVTIKINAGFYRE-KVVVPA-TK--PYITFQGAGRDVTAIEWHDR--------------ASD 128 (359)
T ss_pred CccCHHHHHhhCcccCCccEEEEEeCceEEE-EEEEcC-CC--CeEEEEecCCCceEEEeccc--------------ccc
Confidence 577899998754322 234589999999983 333421 12 677777775 22110000 000
Q ss_pred eEEecCeEEcCCCcccccCCCCCCCCCCCCCcceEEEEeecceEEEeeEEecCCc---------ceEEE-eceecEEEEe
Q 047315 137 LTLTGGGTFDGRGAKAWPYNGCPTHFNCKLLPTNVKFVAMKKTIVRRITSVNSKS---------FHIAL-VECKNFRGSK 206 (417)
Q Consensus 137 v~I~G~G~idg~g~~~~~~~~~~~~~~~~~~~~~i~~~~~~nv~I~~v~i~n~~~---------~~i~~-~~~~~v~i~n 206 (417)
.| -++.. +- .. ...-....++++..+||+|.|+.. ..+-+ ...+...+.+
T Consensus 129 ---~~---~~g~~--~~-----------T~-~SaTv~V~a~~F~a~niTf~Nta~~~~~g~~~~QAVAl~v~gDra~f~~ 188 (359)
T PLN02634 129 ---RG---ANGQQ--LR-----------TY-QTASVTVYANYFTARNISFKNTAPAPMPGMQGWQAVAFRISGDKAFFFG 188 (359)
T ss_pred ---cC---CCCcc--cc-----------cc-cceEEEEECCCeEEEeCeEEeCCccCCCCCCCCceEEEEecCCcEEEEE
Confidence 00 01110 00 00 122334457889999999998732 12222 2467788888
Q ss_pred EEEECCCCCCCCCeEEeecceeEEEEeeEEecCCceEEecCCceeEEEEeeEEcCC---ce-EEEcccccCCCCCcEEEE
Q 047315 207 IKISAPANSPNTDGIHIERSSSVHVSRSHIGTGDDCISVGQGNSEVTIASITCGPG---HG-ISVGSLGRYPNEGDVRGL 282 (417)
Q Consensus 207 ~~i~~~~~~~~~DGi~~~~s~nv~I~n~~i~~gdD~i~i~s~s~nv~i~n~~~~~~---~g-i~igs~~~~~~~~~v~ni 282 (417)
|++.+. .|-+... ...-.+++|.|...=|-|- |.....+++|++..- .| +.-- ++. ....-...
T Consensus 189 C~f~G~-----QDTL~~~-~gR~yf~~CyIeG~VDFIF---G~g~a~Fe~C~I~s~~~~~g~ITA~--~R~-~~~~~~Gf 256 (359)
T PLN02634 189 CGFYGA-----QDTLCDD-AGRHYFKECYIEGSIDFIF---GNGRSMYKDCELHSIASRFGSIAAH--GRT-CPEEKTGF 256 (359)
T ss_pred eEEecc-----cceeeeC-CCCEEEEeeEEcccccEEc---CCceEEEeccEEEEecCCCcEEEeC--CCC-CCCCCcEE
Confidence 888873 3333332 2467888888887655543 334677888887532 23 2221 110 12333567
Q ss_pred EEEeeEEecCceEEEEEEecCCCCCeeEEeEEEEeEEEec
Q 047315 283 VVRDSTMTGTMNGVRIKTWANSPGSSAATNMTFENIIMNN 322 (417)
Q Consensus 283 ~i~n~~~~~~~~gi~i~~~~~~~~g~~i~ni~~~ni~~~~ 322 (417)
.|.||++.+.. -+.+ |++.+- -..++|.+..|.+
T Consensus 257 vF~~C~vtg~g-~~yL----GRPW~~-yarvVf~~t~l~~ 290 (359)
T PLN02634 257 AFVGCRVTGTG-PLYV----GRAMGQ-YSRIVYAYTYFDA 290 (359)
T ss_pred EEEcCEEcCCc-ceEe----cCCCCC-cceEEEEecccCC
Confidence 88888887643 2333 222222 3778888877765
No 39
>PLN02682 pectinesterase family protein
Probab=98.27 E-value=0.00063 Score=66.34 Aligned_cols=207 Identities=18% Similarity=0.161 Sum_probs=114.0
Q ss_pred cHHHHHHHHHHHhhc-CCCeEEEecCCeeeEeeeEEecCccCccceEEeEec---EEEeecCcccccCCCCeEEEcCcee
Q 047315 61 DSKAFEAAWKEACET-TGAVTLLVPHGTYLIGPIKFAGPCKNVSNITVQMKG---YLIASTNLSEYRFGAGWVEFGGVEG 136 (417)
Q Consensus 61 dt~aiq~Al~~a~~~-~ggg~V~ip~GtY~~~~l~l~~~~~~~s~~~l~~~G---~l~~~~~~~~~~~~~~~i~~~~~~n 136 (417)
|-..||+||+++-.. ...-+|+|.+|+|. ..+.++. .| .+++|+++| ++. ......
T Consensus 81 df~TIQ~AIdavP~~~~~r~vI~Ik~G~Y~-EkV~Ip~-~k--~~Itl~G~g~~~TiI---------------t~~~~a- 140 (369)
T PLN02682 81 DFTTIQAAIDSLPVINLVRVVIKVNAGTYR-EKVNIPP-LK--AYITLEGAGADKTII---------------QWGDTA- 140 (369)
T ss_pred CccCHHHHHhhccccCCceEEEEEeCceee-EEEEEec-cC--ceEEEEecCCCccEE---------------Eecccc-
Confidence 577899998754322 23468999999998 3344421 02 678888775 111 110000
Q ss_pred eEEecCeEEcCCCcccccCCCCCCCCCCCCCcceEEEEeecceEEEeeEEecCCc---------ceEEE-eceecEEEEe
Q 047315 137 LTLTGGGTFDGRGAKAWPYNGCPTHFNCKLLPTNVKFVAMKKTIVRRITSVNSKS---------FHIAL-VECKNFRGSK 206 (417)
Q Consensus 137 v~I~G~G~idg~g~~~~~~~~~~~~~~~~~~~~~i~~~~~~nv~I~~v~i~n~~~---------~~i~~-~~~~~v~i~n 206 (417)
+.....|..+ ......-....++++..+|++|.|+.. ..+-+ ...+...+.+
T Consensus 141 ------~~~~~~g~~~------------gT~~SAT~~v~a~~F~a~nlTf~Nt~~~~~~g~~g~QAVAL~v~gDr~~fy~ 202 (369)
T PLN02682 141 ------DTPGPGGRPL------------GTYGSATFAVNSPYFIAKNITFKNTAPVPPPGALGKQAVALRISADTAAFYG 202 (369)
T ss_pred ------CccCCCCCcc------------ccccceEEEEECCCeEEEeeEEEcccccCCCCCCcccEEEEEecCCcEEEEc
Confidence 0000011100 011223455678899999999999642 12333 2577888888
Q ss_pred EEEECCCCCCCCCeEEeecceeEEEEeeEEecCCceEEecCCceeEEEEeeEEcC---Cce-EEEcccccCCCCCcEEEE
Q 047315 207 IKISAPANSPNTDGIHIERSSSVHVSRSHIGTGDDCISVGQGNSEVTIASITCGP---GHG-ISVGSLGRYPNEGDVRGL 282 (417)
Q Consensus 207 ~~i~~~~~~~~~DGi~~~~s~nv~I~n~~i~~gdD~i~i~s~s~nv~i~n~~~~~---~~g-i~igs~~~~~~~~~v~ni 282 (417)
|++.+.. |-+... ...-.++||.|...-|-|- |.....+++|++.. ..| +.--+ +. ....-...
T Consensus 203 C~f~G~Q-----DTLy~~-~gRqyf~~C~IeG~VDFIF---G~g~a~Fe~C~I~s~~~~~G~ITA~~--r~-~~~~~~Gf 270 (369)
T PLN02682 203 CKFLGAQ-----DTLYDH-LGRHYFKDCYIEGSVDFIF---GNGLSLYEGCHLHAIARNFGALTAQK--RQ-SVLEDTGF 270 (369)
T ss_pred ceEeccc-----cceEEC-CCCEEEEeeEEcccccEEe---cCceEEEEccEEEEecCCCeEEecCC--CC-CCCCCceE
Confidence 8888733 333322 2457888888887655553 23478888888752 123 22211 10 11223467
Q ss_pred EEEeeEEecCceEEEEEEecCCCCCeeEEeEEEEeEEEecC
Q 047315 283 VVRDSTMTGTMNGVRIKTWANSPGSSAATNMTFENIIMNNV 323 (417)
Q Consensus 283 ~i~n~~~~~~~~gi~i~~~~~~~~g~~i~ni~~~ni~~~~~ 323 (417)
.|.||++.+.. .+.+ |++..- -..++|.|..|.+.
T Consensus 271 vF~~C~itg~g-~~yL----GRpW~~-yarvVf~~t~m~~~ 305 (369)
T PLN02682 271 SFVNCKVTGSG-ALYL----GRAWGT-FSRVVFAYTYMDNI 305 (369)
T ss_pred EEEeeEecCCC-ceEe----ecCCCC-cceEEEEeccCCCc
Confidence 78888887643 2333 222222 37778888877754
No 40
>PLN02176 putative pectinesterase
Probab=98.23 E-value=0.00043 Score=66.89 Aligned_cols=197 Identities=21% Similarity=0.234 Sum_probs=112.5
Q ss_pred cHHHHHHHHHHHhhcC-CCeEEEecCCeeeEeeeEEecCccCccceEEeEec---EEEeecCcccccCCCCeEEEcCcee
Q 047315 61 DSKAFEAAWKEACETT-GAVTLLVPHGTYLIGPIKFAGPCKNVSNITVQMKG---YLIASTNLSEYRFGAGWVEFGGVEG 136 (417)
Q Consensus 61 dt~aiq~Al~~a~~~~-ggg~V~ip~GtY~~~~l~l~~~~~~~s~~~l~~~G---~l~~~~~~~~~~~~~~~i~~~~~~n 136 (417)
|-..||+||+++-... ..-+|+|++|+|. ..+.++.. | .+++|+++| ++.- ..+..
T Consensus 50 df~TIq~AIdavP~~~~~~~~I~Ik~GvY~-EkV~Ip~~-k--~~vtl~G~g~~~TiIt---------------~~~~~- 109 (340)
T PLN02176 50 YFKTVQSAIDSIPLQNQNWIRILIQNGIYR-EKVTIPKE-K--GYIYMQGKGIEKTIIA---------------YGDHQ- 109 (340)
T ss_pred CccCHHHHHhhchhcCCceEEEEECCcEEE-EEEEECCC-C--ccEEEEEcCCCceEEE---------------EeCCc-
Confidence 5778999987543222 2347999999998 33444311 2 677777775 2111 00000
Q ss_pred eEEecCeEEcCCCcccccCCCCCCCCCCCCCcceEEEEeecceEEEeeEEecCCc----------ceEEE-eceecEEEE
Q 047315 137 LTLTGGGTFDGRGAKAWPYNGCPTHFNCKLLPTNVKFVAMKKTIVRRITSVNSKS----------FHIAL-VECKNFRGS 205 (417)
Q Consensus 137 v~I~G~G~idg~g~~~~~~~~~~~~~~~~~~~~~i~~~~~~nv~I~~v~i~n~~~----------~~i~~-~~~~~v~i~ 205 (417)
++ + ....+. ..++++..+|++|.|... ..+-+ ...+...+.
T Consensus 110 ------~t-~--------------------~saT~~-v~a~~F~a~nlT~~Nt~~~~~~~~~~~~QAVAl~v~gDr~~f~ 161 (340)
T PLN02176 110 ------AT-D--------------------TSATFT-SYASNIIITGITFKNTYNIASNSSRPTKPAVAARMLGDKYAII 161 (340)
T ss_pred ------cc-c--------------------cceEEE-EECCCEEEEeeEEEeCCCccCCCCCCccceEEEEecCccEEEE
Confidence 00 0 011233 357889999999998732 12222 256788899
Q ss_pred eEEEECCCCCCCCCeEEeecceeEEEEeeEEecCCceEEecCCceeEEEEeeEEcC---------Cce-EEEcccccCCC
Q 047315 206 KIKISAPANSPNTDGIHIERSSSVHVSRSHIGTGDDCISVGQGNSEVTIASITCGP---------GHG-ISVGSLGRYPN 275 (417)
Q Consensus 206 n~~i~~~~~~~~~DGi~~~~s~nv~I~n~~i~~gdD~i~i~s~s~nv~i~n~~~~~---------~~g-i~igs~~~~~~ 275 (417)
+|++.+. .|-+... ...-.+++|.|...=|-|- |.....+++|++.. ..| +.--+ + ..
T Consensus 162 ~C~f~G~-----QDTLy~~-~gRqyf~~CyIeG~VDFIF---G~a~a~Fe~C~I~s~~~~~~~~~~~g~ITA~~--r-~~ 229 (340)
T PLN02176 162 DSSFDGF-----QDTLFDG-KGRHYYKRCVISGGIDFIF---GYAQSIFEGCTLKLTLGIYPPNEPYGTITAQG--R-PS 229 (340)
T ss_pred ccEEecc-----cceeEeC-CcCEEEEecEEEecccEEe---cCceEEEeccEEEEecccCCCCCCcEEEEeCC--C-CC
Confidence 9999873 3334333 3467888999988766553 33478888888752 123 22211 1 01
Q ss_pred CCcEEEEEEEeeEEecCceEEEEEEecCCCCCeeEEeEEEEeEEEecC
Q 047315 276 EGDVRGLVVRDSTMTGTMNGVRIKTWANSPGSSAATNMTFENIIMNNV 323 (417)
Q Consensus 276 ~~~v~ni~i~n~~~~~~~~gi~i~~~~~~~~g~~i~ni~~~ni~~~~~ 323 (417)
...-....|.||++.+.. -..+ |++..- -..++|.|..|.+.
T Consensus 230 ~~~~~GfvF~~C~itg~g-~~yL----GRPW~~-yarvVf~~t~m~~~ 271 (340)
T PLN02176 230 PSDKGGFVFKDCTVTGVG-KALL----GRAWGS-YARVIFYRSRFSDV 271 (340)
T ss_pred CCCCcEEEEECCEEccCc-ceee----ecCCCC-CceEEEEecCcCCe
Confidence 123346888899987643 2222 322222 37788888877753
No 41
>PRK10531 acyl-CoA thioesterase; Provisional
Probab=98.22 E-value=0.00058 Score=67.54 Aligned_cols=142 Identities=13% Similarity=0.181 Sum_probs=81.6
Q ss_pred eEEEEeecceEEEeeEEecCCcc--------eEEE-eceecEEEEeEEEECCCCCCCCCeEEee-----------cceeE
Q 047315 170 NVKFVAMKKTIVRRITSVNSKSF--------HIAL-VECKNFRGSKIKISAPANSPNTDGIHIE-----------RSSSV 229 (417)
Q Consensus 170 ~i~~~~~~nv~I~~v~i~n~~~~--------~i~~-~~~~~v~i~n~~i~~~~~~~~~DGi~~~-----------~s~nv 229 (417)
......++++..+||+|.|+... .+-+ ...+.+.+.+|+|.+..| -+... .....
T Consensus 199 ATv~v~ad~F~a~NLTf~Ntag~~~~~~~~QAVALrv~GDra~fy~C~flG~QD-----TLy~~~~~~~~~~~~~~~gRq 273 (422)
T PRK10531 199 AVFWSQNNGLQLQNLTIENTLGDSVDAGNHPAVALRTDGDKVQIENVNILGRQD-----TFFVTNSGVQNRLETDRQPRT 273 (422)
T ss_pred EEEEEECCCEEEEeeEEEeCCCCCCCCCcceeEEEEEcCCcEEEEeeEEecccc-----eeeeccccccccccccccccE
Confidence 45566899999999999998431 2222 356788888888887433 33321 22357
Q ss_pred EEEeeEEecCCceEEecCCceeEEEEeeEEcCC------ce-EEEcccccCCCCCcEEEEEEEeeEEecCceE-EEEE-E
Q 047315 230 HVSRSHIGTGDDCISVGQGNSEVTIASITCGPG------HG-ISVGSLGRYPNEGDVRGLVVRDSTMTGTMNG-VRIK-T 300 (417)
Q Consensus 230 ~I~n~~i~~gdD~i~i~s~s~nv~i~n~~~~~~------~g-i~igs~~~~~~~~~v~ni~i~n~~~~~~~~g-i~i~-~ 300 (417)
.+++|.|...-|-|- |.-...+++|++..- .| +.-.+. ....-....|.||++.....+ ..+. .
T Consensus 274 Yf~~CyIeG~VDFIF---G~g~AvFenC~I~s~~~~~~~~g~ITA~~t----~~~~~~GfvF~nCrit~~g~~~~yLGRp 346 (422)
T PRK10531 274 YVKNSYIEGDVDFVF---GRGAVVFDNTEFRVVNSRTQQEAYVFAPAT----LPNIYYGFLAINSRFNASGDGVAQLGRA 346 (422)
T ss_pred EEEeCEEeecccEEc---cCceEEEEcCEEEEecCCCCCceEEEecCC----CCCCCCEEEEECCEEecCCCCCeeccCC
Confidence 888888887655553 344778888877431 13 111111 123344678888888774322 2332 1
Q ss_pred ecCC-------CCCeeEEeEEEEeEEEecC
Q 047315 301 WANS-------PGSSAATNMTFENIIMNNV 323 (417)
Q Consensus 301 ~~~~-------~~g~~i~ni~~~ni~~~~~ 323 (417)
|... ++......++|.+..|.+.
T Consensus 347 W~~~s~~~~y~~~~~~~arvV~~~s~i~~~ 376 (422)
T PRK10531 347 WDVDAGLSAYVNGANTNGQVVIRDSAINEG 376 (422)
T ss_pred CcccccccccccccCCcceEEEEeCcccce
Confidence 2211 0011025677888777664
No 42
>smart00656 Amb_all Amb_all domain.
Probab=98.15 E-value=0.00018 Score=64.35 Aligned_cols=119 Identities=21% Similarity=0.208 Sum_probs=84.7
Q ss_pred eEEEEeecceEEEeeEEecCC------cceEEEeceecEEEEeEEEECCCC----CCCCCeE-Eee-cceeEEEEeeEEe
Q 047315 170 NVKFVAMKKTIVRRITSVNSK------SFHIALVECKNFRGSKIKISAPAN----SPNTDGI-HIE-RSSSVHVSRSHIG 237 (417)
Q Consensus 170 ~i~~~~~~nv~I~~v~i~n~~------~~~i~~~~~~~v~i~n~~i~~~~~----~~~~DGi-~~~-~s~nv~I~n~~i~ 237 (417)
.|.+..++||.|++++|++.. ..+|.+.++++|.|++|++..... ....||. ++. .+.+++|++|.|.
T Consensus 33 gl~i~~~~NVIirnl~i~~~~~~~~~~~D~i~~~~~~~VwIDHct~s~~~~~~~~~~~~D~~~di~~~s~~vTvs~~~f~ 112 (190)
T smart00656 33 GLTIKSVSNVIIRNLTIHDPKPVYGSDGDAISIDGSSNVWIDHVSLSGCTVTGFGDDTYDGLIDIKNGSTYVTISNNYFH 112 (190)
T ss_pred EEEEEecceEEEeCCEEECCccCCCCCCCEEEEeCCCeEEEEccEeEcceeccCCCCCCCccEEECcccccEEEECceEe
Confidence 377777999999999999863 358999999999999999997411 1124553 443 4799999999998
Q ss_pred cCCceEEecCCce-------eEEEEeeEEcCCce--EEEcccccCCCCCcEEEEEEEeeEEecCc-eEEEE
Q 047315 238 TGDDCISVGQGNS-------EVTIASITCGPGHG--ISVGSLGRYPNEGDVRGLVVRDSTMTGTM-NGVRI 298 (417)
Q Consensus 238 ~gdD~i~i~s~s~-------nv~i~n~~~~~~~g--i~igs~~~~~~~~~v~ni~i~n~~~~~~~-~gi~i 298 (417)
..+=+.-++++.+ +|++.+|.|.+..+ -.+ ..+ .+.+-|+.+.+.. +++.+
T Consensus 113 ~h~~~~liG~~d~~~~~~~~~vT~h~N~~~~~~~R~P~~-------r~g---~~hv~NN~~~n~~~~~~~~ 173 (190)
T smart00656 113 NHWKVMLLGHSDSDTDDGKMRVTIAHNYFGNLRQRAPRV-------RFG---YVHVYNNYYTGWTSYAIGG 173 (190)
T ss_pred cCCEEEEEccCCCccccccceEEEECcEEcCcccCCCcc-------cCC---EEEEEeeEEeCcccEeEec
Confidence 7666666665432 79999999975432 111 011 5788888887765 55544
No 43
>PF00544 Pec_lyase_C: Pectate lyase; InterPro: IPR002022 Pectate lyase 4.2.2.2 from EC is an enzyme involved in the maceration and soft rotting of plant tissue. Pectate lyase is responsible for the eliminative cleavage of pectate, yielding oligosaccharides with 4-deoxy-alpha-D-mann-4-enuronosyl groups at their non-reducing ends. The protein is maximally expressed late in pollen development. It has been suggested that the pollen expression of pectate lyase genes might relate to a requirement for pectin degradation during pollen tube growth []. The structure and the folding kinetics of one member of this family, pectate lyase C (pelC)1 from Erwinia chrysanthemi has been investigated in some detail [,]. PelC contains a parallel beta-helix folding motif. The majority of the regular secondary structure is composed of parallel beta-sheets (about 30%). The individual strands of the sheets are connected by unordered loops of varying length. The backbone is then formed by a large helix composed of beta-sheets. There are two disulphide bonds in pelC and 12 proline residues. One of these prolines, Pro220, is involved in a cis peptide bond. he folding mechanism of pelC involves two slow phases that have been attributed to proline isomerization. Some of the proteins in this family are allergens. Allergies are hypersensitivity reactions of the immune system to specific substances called allergens (such as pollen, stings, drugs, or food) that, in most people, result in no symptoms. A nomenclature system has been established for antigens (allergens) that cause IgE-mediated atopic allergies in humans [WHO/IUIS Allergen Nomenclature Subcommittee King T.P., Hoffmann D., Loewenstein H., Marsh D.G., Platts-Mills T.A.E., Thomas W. Bull. World Health Organ. 72:797-806(1994)]. This nomenclature system is defined by a designation that is composed of the first three letters of the genus; a space; the first letter of the species name; a space and an arabic number. In the event that two species names have identical designations, they are discriminated from one another by adding one or more letters (as necessary) to each species designation. The allergens in this family include allergens with the following designations: Amb a 1, Amb a 2, Amb a 3, Cha o 1, Cup a 1, Cry j 1, Jun a 1. Two of the major allergens in the pollen of short ragweed (Ambrosia artemisiifolia) are Amb aI and Amb aII. The primary structure of Amb aII has been deduced and has been shown to share ~65% sequence identity with the Amb alpha I multigene family of allergens []. Members of the Amb aI/aII family include Nicotiana tabacum (Common tobacco) pectate lyase, which is similar to the deduced amino acid sequences of two pollen-specific pectate lyase genes identified in Solanum lycopersicum (Tomato) (Lycopersicon esculentum) []; Cry jI, a major allergenic glycoprotein of Cryptomeria japonica (Japanese cedar) - the most common pollen allergen in Japan []; and P56 and P59, which share sequence similarity with pectate lyases of plant pathogenic bacteria [].; PDB: 1O8M_A 1O8K_A 1O8E_A 1O8H_A 2PEC_A 1PLU_A 1O8I_A 1O8J_A 1O8D_A 1O8F_A ....
Probab=98.10 E-value=4.1e-05 Score=69.06 Aligned_cols=99 Identities=18% Similarity=0.299 Sum_probs=66.1
Q ss_pred eEEEe-ceecEEEEeEEEECC-----------CCCCCCCeEEeecceeEEEEeeEEecC---------CceEEecCCcee
Q 047315 193 HIALV-ECKNFRGSKIKISAP-----------ANSPNTDGIHIERSSSVHVSRSHIGTG---------DDCISVGQGNSE 251 (417)
Q Consensus 193 ~i~~~-~~~~v~i~n~~i~~~-----------~~~~~~DGi~~~~s~nv~I~n~~i~~g---------dD~i~i~s~s~n 251 (417)
++.+. +++||.|+|++|... ......|+|.+..+++|.|.+|.+..+ |..+.++.++.+
T Consensus 38 G~~i~~~~~NVIirNl~~~~~~~~~~~~~~~~~~~~~~Dai~i~~~~nVWIDH~sfs~~~~~~~~~~~Dg~idi~~~s~~ 117 (200)
T PF00544_consen 38 GLRIIKGASNVIIRNLRFRNVPVDPGPDWSGDGDSSDGDAISIDNSSNVWIDHCSFSWGNFECNSDSSDGLIDIKKGSDN 117 (200)
T ss_dssp EEEEEESCEEEEEES-EEECEEEECSTEEETTEEECS--SEEEESTEEEEEES-EEEETTS-GGGSSSSSSEEEESSTEE
T ss_pred eEEEecCCCeEEEECCEEEeccccCCcccCCCccccCCCeEEEEecccEEEeccEEeccccccccccCCceEEEEeCCce
Confidence 45554 666777777777651 112467899999999999999999876 445788888999
Q ss_pred EEEEeeEEcCCc-eEEEcccccCCCCCcEEEEEEEeeEEecC
Q 047315 252 VTIASITCGPGH-GISVGSLGRYPNEGDVRGLVVRDSTMTGT 292 (417)
Q Consensus 252 v~i~n~~~~~~~-gi~igs~~~~~~~~~v~ni~i~n~~~~~~ 292 (417)
|+|++|.|...+ +.-+|+......... ..+++.++.+.++
T Consensus 118 vTiS~n~f~~~~k~~l~G~~d~~~~~~~-~~vT~hhN~f~~~ 158 (200)
T PF00544_consen 118 VTISNNIFDNHNKTMLIGSSDSNSTDRG-LRVTFHHNYFANT 158 (200)
T ss_dssp EEEES-EEEEEEETCEESSCTTCGGGTT-EEEEEES-EEEEE
T ss_pred EEEEchhccccccccccCCCCCccccCC-ceEEEEeEEECch
Confidence 999999997653 466777533222233 8899999999764
No 44
>PLN02665 pectinesterase family protein
Probab=98.07 E-value=0.0019 Score=63.11 Aligned_cols=206 Identities=18% Similarity=0.121 Sum_probs=112.7
Q ss_pred cHHHHHHHHHHHhhc-CCCeEEEecCCeeeEeeeEEecCccCccceEEeEecEEEeecCcccccCCCCeEEEcCceeeEE
Q 047315 61 DSKAFEAAWKEACET-TGAVTLLVPHGTYLIGPIKFAGPCKNVSNITVQMKGYLIASTNLSEYRFGAGWVEFGGVEGLTL 139 (417)
Q Consensus 61 dt~aiq~Al~~a~~~-~ggg~V~ip~GtY~~~~l~l~~~~~~~s~~~l~~~G~l~~~~~~~~~~~~~~~i~~~~~~nv~I 139 (417)
|-..||+||+++-.. ...-+|+|.+|+|. ..+.++. .| .+++|++++. +...|
T Consensus 79 df~TIq~AIdaiP~~~~~r~vI~Ik~GvY~-EkV~Ip~-~k--p~Itl~G~~~----------------------~~tiI 132 (366)
T PLN02665 79 DFKTITDAIKSIPAGNTQRVIIDIGPGEYN-EKITIDR-SK--PFVTLYGSPG----------------------AMPTL 132 (366)
T ss_pred CccCHHHHHhhCcccCCceEEEEEeCcEEE-EEEEecC-CC--CEEEEEecCC----------------------CCCEE
Confidence 577899998754322 22357899999998 3344431 12 5667666641 01111
Q ss_pred ecCeEEcCCCcccccCCCCCCCCCCCCCcceEEEEeecceEEEeeEEecCCc---------ceEEE-eceecEEEEeEEE
Q 047315 140 TGGGTFDGRGAKAWPYNGCPTHFNCKLLPTNVKFVAMKKTIVRRITSVNSKS---------FHIAL-VECKNFRGSKIKI 209 (417)
Q Consensus 140 ~G~G~idg~g~~~~~~~~~~~~~~~~~~~~~i~~~~~~nv~I~~v~i~n~~~---------~~i~~-~~~~~v~i~n~~i 209 (417)
+..+.-.. +. .....-....++++..+||+|+|+.. ..+-+ ...+...+.||++
T Consensus 133 t~~~~a~~-----~g-----------T~~SaTv~v~a~~F~a~nitf~Nta~~~~~~~~g~QAVAl~v~gDka~f~~C~f 196 (366)
T PLN02665 133 TFDGTAAK-----YG-----------TVYSATLIVESDYFMAANIIIKNSAPRPDGKRKGAQAVAMRISGDKAAFYNCRF 196 (366)
T ss_pred EECCccCC-----CC-----------CcceEEEEEECCCeEEEeeEEEeCCCCcCCCCCCcceEEEEEcCCcEEEEccee
Confidence 11000000 00 01233455678999999999999632 12222 2467788888888
Q ss_pred ECCCCCCCCCeEEeecceeEEEEeeEEecCCceEEecCCceeEEEEeeEEcCC-ce--EEEcccccCCCCCcEEEEEEEe
Q 047315 210 SAPANSPNTDGIHIERSSSVHVSRSHIGTGDDCISVGQGNSEVTIASITCGPG-HG--ISVGSLGRYPNEGDVRGLVVRD 286 (417)
Q Consensus 210 ~~~~~~~~~DGi~~~~s~nv~I~n~~i~~gdD~i~i~s~s~nv~i~n~~~~~~-~g--i~igs~~~~~~~~~v~ni~i~n 286 (417)
.+. .|-+... ...-.+++|.|...=|-|- |.....+++|++..- .+ -.|-..++. ....-....|.|
T Consensus 197 ~G~-----QDTL~~~-~gr~yf~~CyIeG~VDFIF---G~g~a~fe~C~i~s~~~~~~g~ITA~~r~-~~~~~~GfvF~~ 266 (366)
T PLN02665 197 IGF-----QDTLCDD-KGRHFFKDCYIEGTVDFIF---GSGKSLYLNTELHVVGDGGLRVITAQARN-SEAEDSGFSFVH 266 (366)
T ss_pred ccc-----cceeEeC-CCCEEEEeeEEeeccceec---cccceeeEccEEEEecCCCcEEEEcCCCC-CCCCCceEEEEe
Confidence 873 3333333 2457788888887655553 334678888887521 11 111111110 112334667888
Q ss_pred eEEecCceEEEEEEecCCCCCeeEEeEEEEeEEEecC
Q 047315 287 STMTGTMNGVRIKTWANSPGSSAATNMTFENIIMNNV 323 (417)
Q Consensus 287 ~~~~~~~~gi~i~~~~~~~~g~~i~ni~~~ni~~~~~ 323 (417)
|++.+....+.+ |++.+- -..+.|.|..|.+.
T Consensus 267 C~itg~~~~~yL----GRpW~~-ysrvVf~~t~m~~~ 298 (366)
T PLN02665 267 CKVTGTGTGAYL----GRAWMS-RPRVVFAYTEMSSV 298 (366)
T ss_pred eEEecCCCceee----cCCCCC-cceEEEEccccCCe
Confidence 888875423333 222222 36788888877753
No 45
>PLN02773 pectinesterase
Probab=98.07 E-value=0.0015 Score=62.74 Aligned_cols=212 Identities=18% Similarity=0.152 Sum_probs=118.4
Q ss_pred cHHHHHHHHHHHhhcC-CCeEEEecCCeeeEeeeEEecCccCccceEEeEec---EEEeecCcccccCCCCeEEEcCcee
Q 047315 61 DSKAFEAAWKEACETT-GAVTLLVPHGTYLIGPIKFAGPCKNVSNITVQMKG---YLIASTNLSEYRFGAGWVEFGGVEG 136 (417)
Q Consensus 61 dt~aiq~Al~~a~~~~-ggg~V~ip~GtY~~~~l~l~~~~~~~s~~~l~~~G---~l~~~~~~~~~~~~~~~i~~~~~~n 136 (417)
|-.-||+||+++-... ..-+|+|.+|+|. ..+.++.. | .+++|.+++ ++..-.+...... -.. ..
T Consensus 16 df~TIq~Aida~P~~~~~~~~I~Ik~G~Y~-E~V~I~~~-k--~~itl~G~~~~~TiI~~~~~a~~~~------~~~-~~ 84 (317)
T PLN02773 16 DYCTVQDAIDAVPLCNRCRTVIRVAPGVYR-QPVYVPKT-K--NLITLAGLSPEATVLTWNNTATKID------HHQ-AS 84 (317)
T ss_pred CccCHHHHHhhchhcCCceEEEEEeCceEE-EEEEECcC-C--ccEEEEeCCCCceEEEccCcccccc------ccc-cc
Confidence 4778999987543322 2358999999998 44555311 1 467777764 2221000000000 000 00
Q ss_pred eEEecCeEEcCCCcccccCCCCCCCCCCCCCcceEEEEeecceEEEeeEEecCCcc----eEEE-eceecEEEEeEEEEC
Q 047315 137 LTLTGGGTFDGRGAKAWPYNGCPTHFNCKLLPTNVKFVAMKKTIVRRITSVNSKSF----HIAL-VECKNFRGSKIKISA 211 (417)
Q Consensus 137 v~I~G~G~idg~g~~~~~~~~~~~~~~~~~~~~~i~~~~~~nv~I~~v~i~n~~~~----~i~~-~~~~~v~i~n~~i~~ 211 (417)
...|.|+ . ...-....++++..+||+|.|.... .+-+ ..++.+.+.+|++.+
T Consensus 85 -~~~g~gT---------------------~-~SaTv~v~a~~f~a~nlT~~Nt~~~~~gQAvAl~v~gDr~~f~~c~~~G 141 (317)
T PLN02773 85 -RVIGTGT---------------------F-GCGTVIVEGEDFIAENITFENSAPEGSGQAVAIRVTADRCAFYNCRFLG 141 (317)
T ss_pred -cccCcCc---------------------c-CceEEEEECCCeEEEeeEEEeCCCCCCCcEEEEEecCccEEEEccEeec
Confidence 0001011 1 1234555788999999999998421 2222 256889999999987
Q ss_pred CCCCCCCCeEEeecceeEEEEeeEEecCCceEEecCCceeEEEEeeEEcCC-ce-EEEcccccCCCCCcEEEEEEEeeEE
Q 047315 212 PANSPNTDGIHIERSSSVHVSRSHIGTGDDCISVGQGNSEVTIASITCGPG-HG-ISVGSLGRYPNEGDVRGLVVRDSTM 289 (417)
Q Consensus 212 ~~~~~~~DGi~~~~s~nv~I~n~~i~~gdD~i~i~s~s~nv~i~n~~~~~~-~g-i~igs~~~~~~~~~v~ni~i~n~~~ 289 (417)
. .|-+.... ..-.++||.|...-|-|- |.....+++|++..- .| |.--+ +. ....-....|.||++
T Consensus 142 ~-----QDTL~~~~-gr~yf~~c~IeG~VDFIF---G~g~a~Fe~c~i~s~~~g~ITA~~--r~-~~~~~~GfvF~~c~i 209 (317)
T PLN02773 142 W-----QDTLYLHY-GKQYLRDCYIEGSVDFIF---GNSTALLEHCHIHCKSAGFITAQS--RK-SSQESTGYVFLRCVI 209 (317)
T ss_pred c-----cceeEeCC-CCEEEEeeEEeecccEEe---eccEEEEEeeEEEEccCcEEECCC--CC-CCCCCceEEEEccEE
Confidence 3 34444433 468889999988766553 345788999988642 34 22211 10 112234678999999
Q ss_pred ecCce--EEEEEEecCCCCCeeEEeEEEEeEEEecC
Q 047315 290 TGTMN--GVRIKTWANSPGSSAATNMTFENIIMNNV 323 (417)
Q Consensus 290 ~~~~~--gi~i~~~~~~~~g~~i~ni~~~ni~~~~~ 323 (417)
.+... -..+ |++..- -..++|.|..|.+.
T Consensus 210 t~~~~~~~~yL----GRpW~~-~a~vVf~~t~l~~~ 240 (317)
T PLN02773 210 TGNGGSGYMYL----GRPWGP-FGRVVFAYTYMDAC 240 (317)
T ss_pred ecCCCCcceee----cCCCCC-CceEEEEecccCCe
Confidence 87542 1233 222222 37788888888763
No 46
>PLN02497 probable pectinesterase
Probab=98.04 E-value=0.0019 Score=62.28 Aligned_cols=133 Identities=21% Similarity=0.211 Sum_probs=75.8
Q ss_pred EEeecceEEEeeEEecCCcc-----------eEEE-eceecEEEEeEEEECCCCCCCCCeEEeecceeEEEEeeEEecCC
Q 047315 173 FVAMKKTIVRRITSVNSKSF-----------HIAL-VECKNFRGSKIKISAPANSPNTDGIHIERSSSVHVSRSHIGTGD 240 (417)
Q Consensus 173 ~~~~~nv~I~~v~i~n~~~~-----------~i~~-~~~~~v~i~n~~i~~~~~~~~~DGi~~~~s~nv~I~n~~i~~gd 240 (417)
...++++..+|++|.|+... .+-+ ...+...+.+|++.+.. |-+... ...-.+++|.|...-
T Consensus 111 ~v~a~~f~a~nlT~~Nt~~~~~~~~~~~~~QAVAl~v~gDr~~fy~C~f~G~Q-----DTLy~~-~gRqyf~~C~IeG~V 184 (331)
T PLN02497 111 STLADNTVVKSITFANSYNFPSKGNKNPRVPAVAAMIGGDKSAFYSCGFAGVQ-----DTLWDS-DGRHYFKRCTIQGAV 184 (331)
T ss_pred EEecCCeEEEccEEEeCCCCccccCCCCCcceEEEEecCCcEEEEeeEEeccc-----cceeeC-CCcEEEEeCEEEecc
Confidence 35677889999999887421 2222 24677888888888743 333222 345678888888765
Q ss_pred ceEEecCCceeEEEEeeEEcCC--------ce-EEEcccccCCCCCcEEEEEEEeeEEecCceEEEEEEecCCCCCeeEE
Q 047315 241 DCISVGQGNSEVTIASITCGPG--------HG-ISVGSLGRYPNEGDVRGLVVRDSTMTGTMNGVRIKTWANSPGSSAAT 311 (417)
Q Consensus 241 D~i~i~s~s~nv~i~n~~~~~~--------~g-i~igs~~~~~~~~~v~ni~i~n~~~~~~~~gi~i~~~~~~~~g~~i~ 311 (417)
|-|- |.....+++|++..- .| +.--+ + ..........|.||++.+.. -..+ |++..- -.
T Consensus 185 DFIF---G~g~a~Fe~C~I~s~~~~~~~~~~g~ITA~~--r-~~~~~~~GfvF~~C~itg~g-~~yL----GRPW~~-ys 252 (331)
T PLN02497 185 DFIF---GSGQSIYESCVIQVLGGQLEPGLAGFITAQG--R-TNPYDANGFVFKNCLVYGTG-SAYL----GRPWRG-YS 252 (331)
T ss_pred cEEc---cCceEEEEccEEEEecCcCCCCCceEEEecC--C-CCCCCCceEEEEccEEccCC-CEEE----eCCCCC-Cc
Confidence 5542 234677888877521 12 22211 1 01233346778888887643 2333 222221 36
Q ss_pred eEEEEeEEEecC
Q 047315 312 NMTFENIIMNNV 323 (417)
Q Consensus 312 ni~~~ni~~~~~ 323 (417)
.+.|.|..|.+.
T Consensus 253 rvvf~~t~m~~~ 264 (331)
T PLN02497 253 RVLFYNSNLTDV 264 (331)
T ss_pred eEEEEecccCCe
Confidence 777777777653
No 47
>PLN02304 probable pectinesterase
Probab=97.97 E-value=0.0015 Score=63.78 Aligned_cols=200 Identities=17% Similarity=0.187 Sum_probs=108.9
Q ss_pred cHHHHHHHHHHHhhc-CCCeEEEecCCeeeEeeeEEecCccCccceEEeEec---EEEeecCcccccCCCCeEEEcCcee
Q 047315 61 DSKAFEAAWKEACET-TGAVTLLVPHGTYLIGPIKFAGPCKNVSNITVQMKG---YLIASTNLSEYRFGAGWVEFGGVEG 136 (417)
Q Consensus 61 dt~aiq~Al~~a~~~-~ggg~V~ip~GtY~~~~l~l~~~~~~~s~~~l~~~G---~l~~~~~~~~~~~~~~~i~~~~~~n 136 (417)
|-..||+||+++-.. ...-+|+|.+|+|. ..+.++. .| .+++|+++| ++.. .....
T Consensus 86 df~TIQ~AIdavP~~~~~r~vI~Ik~GvY~-EkV~Ip~-~K--~~Itl~G~g~~~TiIt---------------~~~~a- 145 (379)
T PLN02304 86 NFTTVQSAVDAVGNFSQKRNVIWINSGIYY-EKVTVPK-TK--PNITFQGQGFDSTAIA---------------WNDTA- 145 (379)
T ss_pred CccCHHHHHhhCcccCCCcEEEEEeCeEeE-EEEEECC-CC--CcEEEEecCCCCcEEE---------------ccCcc-
Confidence 577899998754322 23458999999998 3344431 12 678888775 1111 00000
Q ss_pred eEEecCeEEcCCCcccccCCCCCCCCCCCCCcceEEEEeecceEEEeeEEecCCc---------ceEEE-eceecEEEEe
Q 047315 137 LTLTGGGTFDGRGAKAWPYNGCPTHFNCKLLPTNVKFVAMKKTIVRRITSVNSKS---------FHIAL-VECKNFRGSK 206 (417)
Q Consensus 137 v~I~G~G~idg~g~~~~~~~~~~~~~~~~~~~~~i~~~~~~nv~I~~v~i~n~~~---------~~i~~-~~~~~v~i~n 206 (417)
..+.|+. ...-....++++..+||+|.|+.. .++-+ ..++...+.+
T Consensus 146 --~~~~gT~----------------------~SaTv~v~a~~F~a~nITf~Nta~~~~~g~~~~QAVAL~v~gDra~fy~ 201 (379)
T PLN02304 146 --KSANGTF----------------------YSASVQVFASNFIAKNISFMNVAPIPKPGDVGAQAVAIRIAGDQAAFWG 201 (379)
T ss_pred --cCCCCcc----------------------ceEEEEEECCCeEEEeeEEEecCCCCCCCCCCccEEEEEecCCcEEEEe
Confidence 0000111 122344557889999999998731 12322 2567788888
Q ss_pred EEEECCCCCCCCCeEEeecceeEEEEeeEEecCCceEEecCCceeEEEEeeEEcCC-----------ce-EEEcccccCC
Q 047315 207 IKISAPANSPNTDGIHIERSSSVHVSRSHIGTGDDCISVGQGNSEVTIASITCGPG-----------HG-ISVGSLGRYP 274 (417)
Q Consensus 207 ~~i~~~~~~~~~DGi~~~~s~nv~I~n~~i~~gdD~i~i~s~s~nv~i~n~~~~~~-----------~g-i~igs~~~~~ 274 (417)
|+|.+.. |-+... ...-.++||.|...=|-|- |.-...+++|++..- .| +.--+ + .
T Consensus 202 C~f~G~Q-----DTLy~~-~gR~Yf~~CyIeG~VDFIF---G~g~A~Fe~C~I~s~~~~~~~g~~~~~G~ITA~~--R-t 269 (379)
T PLN02304 202 CGFFGAQ-----DTLHDD-RGRHYFKDCYIQGSIDFIF---GDARSLYENCRLISMANPVPPGSKSINGAVTAHG--R-T 269 (379)
T ss_pred ceEeccc-----ceeEeC-CCCEEEEeeEEcccccEEe---ccceEEEEccEEEEecCCcccccccCceEEEecC--C-C
Confidence 8888733 333322 2456788888887655543 234677777777421 12 21111 0 0
Q ss_pred CCCcEEEEEEEeeEEecCceEEEEEEecCCCCCeeEEeEEEEeEEEec
Q 047315 275 NEGDVRGLVVRDSTMTGTMNGVRIKTWANSPGSSAATNMTFENIIMNN 322 (417)
Q Consensus 275 ~~~~v~ni~i~n~~~~~~~~gi~i~~~~~~~~g~~i~ni~~~ni~~~~ 322 (417)
....-....|.||++.+.. -+.+ |++..- -..++|.|..|.+
T Consensus 270 ~~~~~~GfvF~~C~itg~g-~vyL----GRPW~p-ysrvVf~~t~m~~ 311 (379)
T PLN02304 270 SKDENTGFSFVNCTIGGTG-RIWL----GRAWRP-YSRVVFAYTSMTD 311 (379)
T ss_pred CCCCCceEEEECCEEccCc-ceee----cCCCCC-cceEEEEecccCC
Confidence 1223346778888886532 2333 222222 3677777777765
No 48
>PLN02708 Probable pectinesterase/pectinesterase inhibitor
Probab=97.94 E-value=0.0018 Score=66.94 Aligned_cols=212 Identities=17% Similarity=0.150 Sum_probs=116.6
Q ss_pred cHHHHHHHHHHHhhc--CCCeEEEecCCeeeEeeeEEecCccCccceEEeEecEEEeecCcccccCCCCeEEEcCceeeE
Q 047315 61 DSKAFEAAWKEACET--TGAVTLLVPHGTYLIGPIKFAGPCKNVSNITVQMKGYLIASTNLSEYRFGAGWVEFGGVEGLT 138 (417)
Q Consensus 61 dt~aiq~Al~~a~~~--~ggg~V~ip~GtY~~~~l~l~~~~~~~s~~~l~~~G~l~~~~~~~~~~~~~~~i~~~~~~nv~ 138 (417)
|-..||+||+++-.. .+.-+|+|.+|+|.- .+.++- .| .+++|.++|. +...
T Consensus 252 ~f~TIq~Av~a~p~~~~~~r~vI~vk~GvY~E-~V~i~~-~k--~~v~l~G~g~----------------------~~Ti 305 (553)
T PLN02708 252 CYKTVQEAVNAAPDNNGDRKFVIRIKEGVYEE-TVRVPL-EK--KNVVFLGDGM----------------------GKTV 305 (553)
T ss_pred CccCHHHHHHhhhhccCCccEEEEEeCceEEe-eeeecC-CC--ccEEEEecCC----------------------CceE
Confidence 577899998765331 234699999999983 333321 02 6777777751 1111
Q ss_pred EecCeEEcCCCcccccCCCCCCCCCCCCCcceEEEEeecceEEEeeEEecCCc----ceEEEe-ceecEEEEeEEEECCC
Q 047315 139 LTGGGTFDGRGAKAWPYNGCPTHFNCKLLPTNVKFVAMKKTIVRRITSVNSKS----FHIALV-ECKNFRGSKIKISAPA 213 (417)
Q Consensus 139 I~G~G~idg~g~~~~~~~~~~~~~~~~~~~~~i~~~~~~nv~I~~v~i~n~~~----~~i~~~-~~~~v~i~n~~i~~~~ 213 (417)
|+|.-.....| |. .....-.....+++..+|++|.|... ..+-+. .++.+.+.+|.|.+..
T Consensus 306 It~~~~~~~~g---~~-----------T~~saT~~v~~~~f~a~~it~~Ntag~~~~QAVAlrv~~D~~~f~~c~~~G~Q 371 (553)
T PLN02708 306 ITGSLNVGQPG---IS-----------TYNTATVGVLGDGFMARDLTIQNTAGPDAHQAVAFRSDSDLSVIENCEFLGNQ 371 (553)
T ss_pred EEecCccCCCC---cC-----------ccceEEEEEEcCCeEEEeeEEEcCCCCCCCceEEEEecCCcEEEEeeeeeecc
Confidence 22210000000 00 01223444568899999999999753 233333 5778888889888743
Q ss_pred CCCCCCeEEeecceeEEEEeeEEecCCceEEecCCceeEEEEeeEEcC---------CceEEEcccccCCCCCcEEEEEE
Q 047315 214 NSPNTDGIHIERSSSVHVSRSHIGTGDDCISVGQGNSEVTIASITCGP---------GHGISVGSLGRYPNEGDVRGLVV 284 (417)
Q Consensus 214 ~~~~~DGi~~~~s~nv~I~n~~i~~gdD~i~i~s~s~nv~i~n~~~~~---------~~gi~igs~~~~~~~~~v~ni~i 284 (417)
|-+.... ..-.+++|.|.+.=|-|- |...+.++||.+.. +..-.|-..++ .....-..+.|
T Consensus 372 -----DTLy~~~-~rq~y~~C~I~GtVDFIF---G~a~avfq~c~i~~~~~~~~~~~~~~~~iTA~~r-~~~~~~~G~vf 441 (553)
T PLN02708 372 -----DTLYAHS-LRQFYKSCRIQGNVDFIF---GNSAAVFQDCAILIAPRQLKPEKGENNAVTAHGR-TDPAQSTGFVF 441 (553)
T ss_pred -----ccceeCC-CceEEEeeEEeecCCEEe---cCceEEEEccEEEEeccccCCCCCCceEEEeCCC-CCCCCCceEEE
Confidence 3344333 456788888887766553 34578888888751 11112211111 12233457888
Q ss_pred EeeEEecCceEE--------EEEEecCCCCCeeEEeEEEEeEEEecC
Q 047315 285 RDSTMTGTMNGV--------RIKTWANSPGSSAATNMTFENIIMNNV 323 (417)
Q Consensus 285 ~n~~~~~~~~gi--------~i~~~~~~~~g~~i~ni~~~ni~~~~~ 323 (417)
.||++.....-. .-+++-|++..- -..++|-+..+.+.
T Consensus 442 ~~C~it~~~~~~~~~~~~~~~~~~yLGRPW~~-ysr~V~~~s~l~~~ 487 (553)
T PLN02708 442 QNCLINGTEEYMKLYRSNPKVHKNFLGRPWKE-YSRTVFIGCNLEAL 487 (553)
T ss_pred EccEEecCCcccccccccccccceeeecCCCC-cceEEEEecccCCe
Confidence 888887643211 012232333332 36777777777653
No 49
>PLN02170 probable pectinesterase/pectinesterase inhibitor
Probab=97.92 E-value=0.0015 Score=66.60 Aligned_cols=206 Identities=18% Similarity=0.210 Sum_probs=117.9
Q ss_pred cHHHHHHHHHHHhh--cCCCeEEEecCCeeeEeeeEEecCccCccceEEeEecEEEeecCcccccCCCCeEEEcCceeeE
Q 047315 61 DSKAFEAAWKEACE--TTGAVTLLVPHGTYLIGPIKFAGPCKNVSNITVQMKGYLIASTNLSEYRFGAGWVEFGGVEGLT 138 (417)
Q Consensus 61 dt~aiq~Al~~a~~--~~ggg~V~ip~GtY~~~~l~l~~~~~~~s~~~l~~~G~l~~~~~~~~~~~~~~~i~~~~~~nv~ 138 (417)
|-..||+||+++.. ....-+|+|.+|+|. ..+.++. .| .+++|+++|. +...
T Consensus 236 ~f~TIq~AI~a~~~~~~~~r~vI~Ik~GvY~-E~V~I~~-~k--~nItl~G~g~----------------------~~Ti 289 (529)
T PLN02170 236 THKTIGEALLSTSLESGGGRTVIYLKAGTYH-ENLNIPT-KQ--KNVMLVGDGK----------------------GKTV 289 (529)
T ss_pred chhhHHHHHHhcccccCCceEEEEEeCCeeE-EEEecCC-CC--ceEEEEEcCC----------------------CCeE
Confidence 57889999875432 233568999999998 3344431 12 6777777751 1111
Q ss_pred EecCeEEcCCCcccccCCCCCCCCCCCCCcceEEEEeecceEEEeeEEecCCc----ceEEE-eceecEEEEeEEEECCC
Q 047315 139 LTGGGTFDGRGAKAWPYNGCPTHFNCKLLPTNVKFVAMKKTIVRRITSVNSKS----FHIAL-VECKNFRGSKIKISAPA 213 (417)
Q Consensus 139 I~G~G~idg~g~~~~~~~~~~~~~~~~~~~~~i~~~~~~nv~I~~v~i~n~~~----~~i~~-~~~~~v~i~n~~i~~~~ 213 (417)
|+|... .+.+ |. .-...-.....+++..+|++|.|... ..+-+ ..++...+.+|++.+..
T Consensus 290 It~~~~-~~~g---~~-----------T~~SaTv~v~~~~F~a~nitf~Ntag~~~~QAVALrv~gDr~~fy~C~f~GyQ 354 (529)
T PLN02170 290 IVGSRS-NRGG---WT-----------TYQTATVAAMGDGFIARDITFVNSAGPNSEQAVALRVGSDKSVVYRCSVEGYQ 354 (529)
T ss_pred EEeCCc-CCCC---Cc-----------cccceEEEEEcCCeEEEeeEEEecCCCCCCceEEEEecCCcEEEEeeeEeccC
Confidence 222100 0001 00 01234556678899999999999742 23333 25778899999998743
Q ss_pred CCCCCCeEEeecceeEEEEeeEEecCCceEEecCCceeEEEEeeEEcCC----ceEEEcccccCCCCCcEEEEEEEeeEE
Q 047315 214 NSPNTDGIHIERSSSVHVSRSHIGTGDDCISVGQGNSEVTIASITCGPG----HGISVGSLGRYPNEGDVRGLVVRDSTM 289 (417)
Q Consensus 214 ~~~~~DGi~~~~s~nv~I~n~~i~~gdD~i~i~s~s~nv~i~n~~~~~~----~gi~igs~~~~~~~~~v~ni~i~n~~~ 289 (417)
|-+.... ..-.+++|.|.+.=|-|- |.....++||.+..- ..-.|-..++ .....-..+.|.||++
T Consensus 355 -----DTLy~~~-~Rqyy~~C~I~GtVDFIF---G~a~avFq~C~I~~~~~~~~~g~ITAq~R-~~~~~~~Gfvf~~C~i 424 (529)
T PLN02170 355 -----DSLYTHS-KRQFYRETDITGTVDFIF---GNSAVVFQSCNIAARKPSGDRNYVTAQGR-SDPNQNTGISIHNCRI 424 (529)
T ss_pred -----CcceeCC-CCEEEEeeEEccccceec---ccceEEEeccEEEEecCCCCceEEEecCC-CCCCCCceEEEEeeEE
Confidence 3344333 456779999988655553 345788888887521 1112211111 1223345788999999
Q ss_pred ecCceEEEEEEecCCCCCeeEEeEEEEeEEEecC
Q 047315 290 TGTMNGVRIKTWANSPGSSAATNMTFENIIMNNV 323 (417)
Q Consensus 290 ~~~~~gi~i~~~~~~~~g~~i~ni~~~ni~~~~~ 323 (417)
.+.. ...+ |++..- -..++|.+..+.+.
T Consensus 425 t~~~-~~yL----GRPW~~-ysrvVf~~t~l~~~ 452 (529)
T PLN02170 425 TAES-MTYL----GRPWKE-YSRTVVMQSFIDGS 452 (529)
T ss_pred ecCC-ceee----eCCCCC-CceEEEEecccCCe
Confidence 8754 2222 332222 37778888877653
No 50
>PLN02671 pectinesterase
Probab=97.89 E-value=0.0022 Score=62.43 Aligned_cols=209 Identities=15% Similarity=0.133 Sum_probs=111.7
Q ss_pred cHHHHHHHHHHHhhc-CCCeEEEecCCeeeEeeeEEecCccCccceEEeEecEEEeecCcccccCCCCeEEEcCceeeEE
Q 047315 61 DSKAFEAAWKEACET-TGAVTLLVPHGTYLIGPIKFAGPCKNVSNITVQMKGYLIASTNLSEYRFGAGWVEFGGVEGLTL 139 (417)
Q Consensus 61 dt~aiq~Al~~a~~~-~ggg~V~ip~GtY~~~~l~l~~~~~~~s~~~l~~~G~l~~~~~~~~~~~~~~~i~~~~~~nv~I 139 (417)
|-..||+||+++-.. ...-+|+|.||+|. ..+.++.. | .+++|+++|. . .++..|
T Consensus 70 df~TIQ~AIdavP~~~~~~~~I~Ik~GvY~-EkV~I~~~-k--~~Itl~G~g~-----~---------------~~~TvI 125 (359)
T PLN02671 70 DSLTVQGAVDMVPDYNSQRVKIYILPGIYR-EKVLVPKS-K--PYISFIGNES-----R---------------AGDTVI 125 (359)
T ss_pred CccCHHHHHHhchhcCCccEEEEEeCceEE-EEEEECCC-C--CeEEEEecCC-----C---------------CCCEEE
Confidence 577899998754332 23458999999998 33344210 2 5666666540 0 011111
Q ss_pred ecC---eEEcCCCcccccCCCCCCCCCCCCCcceEEEEeecceEEEeeEEecCCc--------ceEEE-eceecEEEEeE
Q 047315 140 TGG---GTFDGRGAKAWPYNGCPTHFNCKLLPTNVKFVAMKKTIVRRITSVNSKS--------FHIAL-VECKNFRGSKI 207 (417)
Q Consensus 140 ~G~---G~idg~g~~~~~~~~~~~~~~~~~~~~~i~~~~~~nv~I~~v~i~n~~~--------~~i~~-~~~~~v~i~n~ 207 (417)
... +....++..| ......-....++++..+||+|.|... ..+-+ ...+.+.+.+|
T Consensus 126 t~~~~a~~~~~~g~~~------------gT~~SaTv~v~a~~F~a~nitfeNt~~~~~g~~~~QAVALrv~gDra~f~~c 193 (359)
T PLN02671 126 SWNDKASDLDSNGFEL------------GTYRTASVTIESDYFCATGITFENTVVAEPGGQGMQAVALRISGDKAFFYKV 193 (359)
T ss_pred EcCCcccccccCCccc------------cceeeEEEEEECCceEEEeeEEEcCCCCCCCCCCccEEEEEEcCccEEEEcc
Confidence 110 0000111100 011223455667889999999998721 12222 24677888888
Q ss_pred EEECCCCCCCCCeEEeecceeEEEEeeEEecCCceEEecCCceeEEEEeeEEcCC---ce-EEEcccccCCCCCcEEEEE
Q 047315 208 KISAPANSPNTDGIHIERSSSVHVSRSHIGTGDDCISVGQGNSEVTIASITCGPG---HG-ISVGSLGRYPNEGDVRGLV 283 (417)
Q Consensus 208 ~i~~~~~~~~~DGi~~~~s~nv~I~n~~i~~gdD~i~i~s~s~nv~i~n~~~~~~---~g-i~igs~~~~~~~~~v~ni~ 283 (417)
++.+.. |-+... ...-.+++|.|...-|-|- |.....+++|++..- .| +.--+. . ....-....
T Consensus 194 ~f~G~Q-----DTLy~~-~gR~yf~~CyIeG~VDFIF---G~g~A~Fe~C~I~s~~~~~G~ITA~~r--~-~~~~~~Gfv 261 (359)
T PLN02671 194 RVLGAQ-----DTLLDE-TGSHYFYQCYIQGSVDFIF---GNAKSLYQDCVIQSTAKRSGAIAAHHR--D-SPTEDTGFS 261 (359)
T ss_pred eEeccc-----cccEeC-CCcEEEEecEEEEeccEEe---cceeEEEeccEEEEecCCCeEEEeecc--C-CCCCCccEE
Confidence 888743 333322 2356888888887655553 234678888887531 23 222111 0 112334678
Q ss_pred EEeeEEecCceEEEEEEecCCCCCeeEEeEEEEeEEEecC
Q 047315 284 VRDSTMTGTMNGVRIKTWANSPGSSAATNMTFENIIMNNV 323 (417)
Q Consensus 284 i~n~~~~~~~~gi~i~~~~~~~~g~~i~ni~~~ni~~~~~ 323 (417)
|.||++.+.. .+.+ |++..- -..++|.|..|.+.
T Consensus 262 F~~C~itg~g-~vyL----GRPW~~-yarvVf~~t~m~~~ 295 (359)
T PLN02671 262 FVNCVINGTG-KIYL----GRAWGN-YSRTVYSNCFIADI 295 (359)
T ss_pred EEccEEccCc-cEEE----eCCCCC-CceEEEEecccCCe
Confidence 8888887633 2333 222222 36777888777653
No 51
>PLN02713 Probable pectinesterase/pectinesterase inhibitor
Probab=97.88 E-value=0.0017 Score=67.19 Aligned_cols=208 Identities=17% Similarity=0.200 Sum_probs=120.3
Q ss_pred cHHHHHHHHHHHhhc----CCCeEEEecCCeeeEeeeEEecCccCccceEEeEecEEEeecCcccccCCCCeEEEcCcee
Q 047315 61 DSKAFEAAWKEACET----TGAVTLLVPHGTYLIGPIKFAGPCKNVSNITVQMKGYLIASTNLSEYRFGAGWVEFGGVEG 136 (417)
Q Consensus 61 dt~aiq~Al~~a~~~----~ggg~V~ip~GtY~~~~l~l~~~~~~~s~~~l~~~G~l~~~~~~~~~~~~~~~i~~~~~~n 136 (417)
|-..||+||+++-.. .+.-+|+|.+|+|. ..+.++.. | .+++|+++|. +.
T Consensus 261 ~f~TIq~Av~a~p~~~~~~~~~~vI~Ik~G~Y~-E~V~i~~~-k--~~i~l~G~g~----------------------~~ 314 (566)
T PLN02713 261 NFTTINDAVAAAPNNTDGSNGYFVIYVTAGVYE-EYVSIPKN-K--KYLMMIGDGI----------------------NQ 314 (566)
T ss_pred CCCCHHHHHHhhhcccCCCCceEEEEEcCcEEE-EEEEecCC-C--ceEEEEecCC----------------------CC
Confidence 577899998654221 12358999999998 33444311 2 5677777651 11
Q ss_pred eEEecCe-EEcCCCcccccCCCCCCCCCCCCCcceEEEEeecceEEEeeEEecCCc----ceEEE-eceecEEEEeEEEE
Q 047315 137 LTLTGGG-TFDGRGAKAWPYNGCPTHFNCKLLPTNVKFVAMKKTIVRRITSVNSKS----FHIAL-VECKNFRGSKIKIS 210 (417)
Q Consensus 137 v~I~G~G-~idg~g~~~~~~~~~~~~~~~~~~~~~i~~~~~~nv~I~~v~i~n~~~----~~i~~-~~~~~v~i~n~~i~ 210 (417)
..|+|.. ..+| |. .. ...-.....+++..+|++|.|... ..+-+ ..++...+.+|+|.
T Consensus 315 TiIt~~~~~~~g-----~~----------T~-~SaT~~v~~~~F~a~nitf~Ntag~~~~QAVAlrv~~D~~~fy~C~~~ 378 (566)
T PLN02713 315 TVITGNRSVVDG-----WT----------TF-NSATFAVVGQNFVAVNITFRNTAGPAKHQAVALRSGADLSTFYSCSFE 378 (566)
T ss_pred cEEEcCCcccCC-----Cc----------cc-cceeEEEECCCeEEEeeEEEeCCCCCCCceEEEEecCCcEEEEeeeec
Confidence 1122210 0111 11 01 123444567999999999999742 23333 36788899999999
Q ss_pred CCCCCCCCCeEEeecceeEEEEeeEEecCCceEEecCCceeEEEEeeEEcCC------ce-EEEcccccCCCCCcEEEEE
Q 047315 211 APANSPNTDGIHIERSSSVHVSRSHIGTGDDCISVGQGNSEVTIASITCGPG------HG-ISVGSLGRYPNEGDVRGLV 283 (417)
Q Consensus 211 ~~~~~~~~DGi~~~~s~nv~I~n~~i~~gdD~i~i~s~s~nv~i~n~~~~~~------~g-i~igs~~~~~~~~~v~ni~ 283 (417)
+. .|-+.... ..-.+++|.|.+.=|-|- |...+.++||.+..- .+ +.. .++ .....-..+.
T Consensus 379 G~-----QDTLy~~~-~Rqyy~~C~I~GtVDFIF---G~a~avfq~C~i~~~~~~~~~~~~iTA--q~r-~~~~~~~G~v 446 (566)
T PLN02713 379 AY-----QDTLYTHS-LRQFYRECDIYGTVDFIF---GNAAVVFQNCNLYPRLPMQGQFNTITA--QGR-TDPNQNTGTS 446 (566)
T ss_pred cC-----CcceEECC-CCEEEEeeEEecccceec---ccceEEEeccEEEEecCCCCCcceeee--cCC-CCCCCCCEEE
Confidence 74 34444443 457999999998766553 345889999988421 12 222 111 1223345789
Q ss_pred EEeeEEecCceE----EEEEEecCCCCCeeEEeEEEEeEEEecC
Q 047315 284 VRDSTMTGTMNG----VRIKTWANSPGSSAATNMTFENIIMNNV 323 (417)
Q Consensus 284 i~n~~~~~~~~g----i~i~~~~~~~~g~~i~ni~~~ni~~~~~ 323 (417)
|.||++...... -..+++-|++..- -..++|.+..|.+.
T Consensus 447 f~~c~i~~~~~~~~~~~~~~~yLGRPW~~-ysr~V~~~s~~~~~ 489 (566)
T PLN02713 447 IQNCTIKAADDLASSNYTVKTYLGRPWKE-YSRTVVMQSYIDGL 489 (566)
T ss_pred EEcCEEecCCcccccccccceeeecCCCC-cceEEEEecccCCe
Confidence 999999875421 0122333433332 37788888888764
No 52
>PF12708 Pectate_lyase_3: Pectate lyase superfamily protein; PDB: 3EQN_A 3EQO_A 2PYG_A 2PYH_A 3SUC_A 3GQ7_A 3GQ9_A 3GQA_A 3GQ8_A 2VBE_A ....
Probab=97.87 E-value=0.00075 Score=61.59 Aligned_cols=123 Identities=21% Similarity=0.346 Sum_probs=81.7
Q ss_pred eEEEeeEEecCC------cceEEEeceecEEEEeEEEECCCCCCCCCeEEeecceeEEEEeeEEecCCceEEecCCceeE
Q 047315 179 TIVRRITSVNSK------SFHIALVECKNFRGSKIKISAPANSPNTDGIHIERSSSVHVSRSHIGTGDDCISVGQGNSEV 252 (417)
Q Consensus 179 v~I~~v~i~n~~------~~~i~~~~~~~v~i~n~~i~~~~~~~~~DGi~~~~s~nv~I~n~~i~~gdD~i~i~s~s~nv 252 (417)
++|+++++.... ..++++..++++.++||++.+. +.+|+.+..+....+.+..... ++.+..++.++
T Consensus 94 ~~i~nl~i~~~~~~~~~~~~~i~~~~~~~~~i~nv~~~~~----~~~~i~~~~~~~~~~~~~~~~~---~~~~~~~~~~~ 166 (225)
T PF12708_consen 94 IQIRNLTIDGNGIDPNNNNNGIRFNSSQNVSISNVRIENS----GGDGIYFNTGTDYRIIGSTHVS---GIFIDNGSNNV 166 (225)
T ss_dssp EEEEEEEEEETCGCE-SCEEEEEETTEEEEEEEEEEEES-----SS-SEEEECCEECEEECCEEEE---EEEEESCEEEE
T ss_pred EEEEeeEEEcccccCCCCceEEEEEeCCeEEEEeEEEEcc----CccEEEEEccccCcEeecccce---eeeeccceeEE
Confidence 447887776543 2478888999999999999873 4677887754444444433221 23333345678
Q ss_pred EEEeeEEcCCc-eEEEcccccCCCCCcEEEEEEEeeEEec-CceEEEEEEecCCCCCeeEEeEEEEeEEEecCCccE
Q 047315 253 TIASITCGPGH-GISVGSLGRYPNEGDVRGLVVRDSTMTG-TMNGVRIKTWANSPGSSAATNMTFENIIMNNVSNPI 327 (417)
Q Consensus 253 ~i~n~~~~~~~-gi~igs~~~~~~~~~v~ni~i~n~~~~~-~~~gi~i~~~~~~~~g~~i~ni~~~ni~~~~~~~~i 327 (417)
.+.++.+..+. |+..+ -++++++||.+.+ ...|+.+.. + .+++++|++++++..+|
T Consensus 167 ~~~~~~~~~~~~g~~~~----------~~~~~i~n~~~~~~~~~gi~i~~------~---~~~~i~n~~i~~~~~g~ 224 (225)
T PF12708_consen 167 IVNNCIFNGGDNGIILG----------NNNITISNNTFEGNCGNGINIEG------G---SNIIISNNTIENCDDGI 224 (225)
T ss_dssp EEECEEEESSSCSEECE----------EEEEEEECEEEESSSSESEEEEE------C---SEEEEEEEEEESSSEEE
T ss_pred EECCccccCCCceeEee----------cceEEEEeEEECCccceeEEEEC------C---eEEEEEeEEEECCccCc
Confidence 88888887654 53221 1689999999998 778898843 2 44788888888876654
No 53
>PLN02432 putative pectinesterase
Probab=97.86 E-value=0.004 Score=59.10 Aligned_cols=199 Identities=17% Similarity=0.150 Sum_probs=107.5
Q ss_pred cHHHHHHHHHHHhhc-CCCeEEEecCCeeeEeeeEEecCccCccceEEeEecEEEeecCcccccCCCCeEEEcCceeeEE
Q 047315 61 DSKAFEAAWKEACET-TGAVTLLVPHGTYLIGPIKFAGPCKNVSNITVQMKGYLIASTNLSEYRFGAGWVEFGGVEGLTL 139 (417)
Q Consensus 61 dt~aiq~Al~~a~~~-~ggg~V~ip~GtY~~~~l~l~~~~~~~s~~~l~~~G~l~~~~~~~~~~~~~~~i~~~~~~nv~I 139 (417)
|-..||+||+++-.. ...-+|+|.+|+|. ..+.++.. | .+++|.+++. ++..|
T Consensus 22 ~f~TIq~Aida~p~~~~~~~~I~I~~G~Y~-E~V~ip~~-k--~~itl~G~~~----------------------~~TvI 75 (293)
T PLN02432 22 DFRKIQDAIDAVPSNNSQLVFIWVKPGIYR-EKVVVPAD-K--PFITLSGTQA----------------------SNTII 75 (293)
T ss_pred CccCHHHHHhhccccCCceEEEEEeCceeE-EEEEEecc-C--ceEEEEEcCC----------------------CCeEE
Confidence 577899998754332 23458999999996 33444210 1 5666666540 11112
Q ss_pred ecCeEEcCCCcccccCCCCCCCCCCCCCcceEEEEeecceEEEeeEEecCCc---ceEEE-eceecEEEEeEEEECCCCC
Q 047315 140 TGGGTFDGRGAKAWPYNGCPTHFNCKLLPTNVKFVAMKKTIVRRITSVNSKS---FHIAL-VECKNFRGSKIKISAPANS 215 (417)
Q Consensus 140 ~G~G~idg~g~~~~~~~~~~~~~~~~~~~~~i~~~~~~nv~I~~v~i~n~~~---~~i~~-~~~~~v~i~n~~i~~~~~~ 215 (417)
... ++.+ . . ...-....++++..+|++|.|... -.+-+ ...+...+.+|++.+.
T Consensus 76 ~~~---~~~~-~--------------~-~saT~~v~a~~f~a~nlt~~Nt~g~~~QAvAl~v~gDr~~f~~c~~~G~--- 133 (293)
T PLN02432 76 TWN---DGGD-I--------------F-ESPTLSVLASDFVGRFLTIQNTFGSSGKAVALRVAGDRAAFYGCRILSY--- 133 (293)
T ss_pred Eec---CCcc-c--------------c-cceEEEEECCCeEEEeeEEEeCCCCCCceEEEEEcCCcEEEEcceEecc---
Confidence 110 0000 0 0 112334567889999999998732 12222 2567788888888863
Q ss_pred CCCCeEEeecceeEEEEeeEEecCCceEEecCCceeEEEEeeEEcC---Cce-EEEcccccCCCCCcEEEEEEEeeEEec
Q 047315 216 PNTDGIHIERSSSVHVSRSHIGTGDDCISVGQGNSEVTIASITCGP---GHG-ISVGSLGRYPNEGDVRGLVVRDSTMTG 291 (417)
Q Consensus 216 ~~~DGi~~~~s~nv~I~n~~i~~gdD~i~i~s~s~nv~i~n~~~~~---~~g-i~igs~~~~~~~~~v~ni~i~n~~~~~ 291 (417)
.|-+... ...-.++||.|...-|-|- |.....+++|++.. ..| +.--+.. ....-....|.||++.+
T Consensus 134 --QDTLy~~-~gr~yf~~c~I~G~VDFIF---G~g~a~Fe~c~i~s~~~~~g~itA~~r~---~~~~~~Gfvf~~c~itg 204 (293)
T PLN02432 134 --QDTLLDD-TGRHYYRNCYIEGATDFIC---GNAASLFEKCHLHSLSPNNGAITAQQRT---SASENTGFTFLGCKLTG 204 (293)
T ss_pred --cceeEEC-CCCEEEEeCEEEecccEEe---cCceEEEEeeEEEEecCCCCeEEecCCC---CCCCCceEEEEeeEEcc
Confidence 3333333 2456788888887655553 23467788887742 123 2221110 11223367788888875
Q ss_pred CceEEEEEEecCCCCCeeEEeEEEEeEEEec
Q 047315 292 TMNGVRIKTWANSPGSSAATNMTFENIIMNN 322 (417)
Q Consensus 292 ~~~gi~i~~~~~~~~g~~i~ni~~~ni~~~~ 322 (417)
.. ...+ |++.+- -..+.|.|..|.+
T Consensus 205 ~g-~~yL----GRpW~~-~srvvf~~t~l~~ 229 (293)
T PLN02432 205 AG-TTYL----GRPWGP-YSRVVFALSYMSS 229 (293)
T ss_pred cc-hhhc----cCCCCC-ccEEEEEecccCC
Confidence 32 1222 222222 3677777777765
No 54
>PLN02916 pectinesterase family protein
Probab=97.86 E-value=0.0024 Score=64.80 Aligned_cols=209 Identities=16% Similarity=0.154 Sum_probs=119.6
Q ss_pred cHHHHHHHHHHHhh----cCCCeEEEecCCeeeEeeeEEecCccCccceEEeEecEEEeecCcccccCCCCeEEEcCcee
Q 047315 61 DSKAFEAAWKEACE----TTGAVTLLVPHGTYLIGPIKFAGPCKNVSNITVQMKGYLIASTNLSEYRFGAGWVEFGGVEG 136 (417)
Q Consensus 61 dt~aiq~Al~~a~~----~~ggg~V~ip~GtY~~~~l~l~~~~~~~s~~~l~~~G~l~~~~~~~~~~~~~~~i~~~~~~n 136 (417)
|-..||+||+++-. ....-+|+|.+|+|. ..+.++.. | .+++|+++|. +.
T Consensus 198 ~f~TIq~AI~a~P~~~~~~~~r~vI~Ik~GvY~-E~V~I~~~-k--~~i~l~G~g~----------------------~~ 251 (502)
T PLN02916 198 THRTINQALAALSRMGKSRTNRVIIYVKAGVYN-EKVEIDRH-M--KNVMFVGDGM----------------------DK 251 (502)
T ss_pred CccCHHHHHHhcccccCCCCceEEEEEeCceee-EEEEecCC-C--ceEEEEecCC----------------------CC
Confidence 56789999865432 123458999999998 34444311 2 5777777751 11
Q ss_pred eEEecCe-EEcCCCcccccCCCCCCCCCCCCCcceEEEEeecceEEEeeEEecCCc----ceEEEe-ceecEEEEeEEEE
Q 047315 137 LTLTGGG-TFDGRGAKAWPYNGCPTHFNCKLLPTNVKFVAMKKTIVRRITSVNSKS----FHIALV-ECKNFRGSKIKIS 210 (417)
Q Consensus 137 v~I~G~G-~idg~g~~~~~~~~~~~~~~~~~~~~~i~~~~~~nv~I~~v~i~n~~~----~~i~~~-~~~~v~i~n~~i~ 210 (417)
..|++.- .-+|.. . ....-.....+++..+|++|.|... ..+-+. .++...+.+|.|.
T Consensus 252 TiIt~~~~~~~g~~-T---------------~~SAT~~v~~~~F~A~nitf~Ntag~~~~QAVALrv~~D~a~fy~C~f~ 315 (502)
T PLN02916 252 TIITNNRNVPDGST-T---------------YSSATFGVSGDGFWARDITFENTAGPHKHQAVALRVSSDLSVFYRCSFK 315 (502)
T ss_pred cEEEeCCccCCCCc-c---------------eeeEEEEEECCCEEEEeeEEEeCCCCCCCceEEEEEcCCcEEEEeeeEe
Confidence 1111100 001100 0 0223455667889999999998732 233333 5788899999999
Q ss_pred CCCCCCCCCeEEeecceeEEEEeeEEecCCceEEecCCceeEEEEeeEEcCC------ceEEEcccccCCCCCcEEEEEE
Q 047315 211 APANSPNTDGIHIERSSSVHVSRSHIGTGDDCISVGQGNSEVTIASITCGPG------HGISVGSLGRYPNEGDVRGLVV 284 (417)
Q Consensus 211 ~~~~~~~~DGi~~~~s~nv~I~n~~i~~gdD~i~i~s~s~nv~i~n~~~~~~------~gi~igs~~~~~~~~~v~ni~i 284 (417)
+. .|-+.... ..-..++|.|.+.=|-|- |.....++||.+..- .| .|-..++ .....-..+.|
T Consensus 316 G~-----QDTLy~~~-~Rqyy~~C~I~GtVDFIF---G~a~avFq~C~I~~~~~~~~~~g-~ITAq~r-~~~~~~tGfvf 384 (502)
T PLN02916 316 GY-----QDTLFVHS-LRQFYRDCHIYGTIDFIF---GDAAVVFQNCDIFVRRPMDHQGN-MITAQGR-DDPHENTGISI 384 (502)
T ss_pred cc-----CceeEeCC-CCEEEEecEEecccceec---cCceEEEecCEEEEecCCCCCcc-eEEecCC-CCCCCCcEEEE
Confidence 74 34444443 456889999998766553 345888899987421 12 2211111 01233457889
Q ss_pred EeeEEecCceEE----EEEEecCCCCCeeEEeEEEEeEEEecC
Q 047315 285 RDSTMTGTMNGV----RIKTWANSPGSSAATNMTFENIIMNNV 323 (417)
Q Consensus 285 ~n~~~~~~~~gi----~i~~~~~~~~g~~i~ni~~~ni~~~~~ 323 (417)
.||++....... ..+++-|+|..- -+.++|.+..|.+.
T Consensus 385 ~~C~it~~~~~~~~~g~~~~yLGRPW~~-ysrvVf~~t~~~~~ 426 (502)
T PLN02916 385 QHSRVRASPEFEAVKGRFKSFLGRPWKK-YSRTVFLKTDLDGL 426 (502)
T ss_pred EeeEEecCccccccccccceEeecCCCC-CceEEEEecccCCe
Confidence 999998754211 122333333332 47888888888764
No 55
>PLN02995 Probable pectinesterase/pectinesterase inhibitor
Probab=97.82 E-value=0.0021 Score=66.18 Aligned_cols=210 Identities=18% Similarity=0.178 Sum_probs=120.9
Q ss_pred cHHHHHHHHHHHhh---cCCCeEEEecCCeeeEeeeEEecCccCccceEEeEecEEEeecCcccccCCCCeEEEcCceee
Q 047315 61 DSKAFEAAWKEACE---TTGAVTLLVPHGTYLIGPIKFAGPCKNVSNITVQMKGYLIASTNLSEYRFGAGWVEFGGVEGL 137 (417)
Q Consensus 61 dt~aiq~Al~~a~~---~~ggg~V~ip~GtY~~~~l~l~~~~~~~s~~~l~~~G~l~~~~~~~~~~~~~~~i~~~~~~nv 137 (417)
|-..||+||+++-. ..+.-+|+|.+|+|.-. +.++. .| .+++|+++|. +..
T Consensus 234 ~f~TIq~Ai~a~p~~~~~~~r~vI~Ik~G~Y~E~-V~i~~-~k--~~i~l~G~g~----------------------~~T 287 (539)
T PLN02995 234 HFNTVQAAIDVAGRRKVTSGRFVIYVKRGIYQEN-INVRL-NN--DDIMLVGDGM----------------------RST 287 (539)
T ss_pred CccCHHHHHHhcccccCCCceEEEEEeCCEeEEE-EEecC-CC--CcEEEEEcCC----------------------CCe
Confidence 57789999875422 23456899999999844 33321 12 6788877761 111
Q ss_pred EEecCeEEcCCCcccccCCCCCCCCCCCCCcceEEEEeecceEEEeeEEecCCc----ceEEEe-ceecEEEEeEEEECC
Q 047315 138 TLTGGGTFDGRGAKAWPYNGCPTHFNCKLLPTNVKFVAMKKTIVRRITSVNSKS----FHIALV-ECKNFRGSKIKISAP 212 (417)
Q Consensus 138 ~I~G~G~idg~g~~~~~~~~~~~~~~~~~~~~~i~~~~~~nv~I~~v~i~n~~~----~~i~~~-~~~~v~i~n~~i~~~ 212 (417)
.|+|.-.. +.+ |. .-...-.....+++..+|++|.|... ..+-+. .++...+.+|+|.+.
T Consensus 288 vIt~~~~~-~~~---~~-----------T~~SaT~~v~~~~F~a~nitf~Ntag~~~~QAVAlrv~~Dr~~f~~c~~~G~ 352 (539)
T PLN02995 288 IITGGRSV-KGG---YT-----------TYNSATAGIEGLHFIAKGITFRNTAGPAKGQAVALRSSSDLSIFYKCSIEGY 352 (539)
T ss_pred EEEeCCcc-CCC---Cc-----------ccceEEEEEECCCeEEEeeEEEeCCCCCCCceEEEEEcCCceeEEcceEecc
Confidence 11110000 000 00 00223344568899999999998743 233333 578899999999984
Q ss_pred CCCCCCCeEEeecceeEEEEeeEEecCCceEEecCCceeEEEEeeEEcCC------ceEEEcccccCCCCCcEEEEEEEe
Q 047315 213 ANSPNTDGIHIERSSSVHVSRSHIGTGDDCISVGQGNSEVTIASITCGPG------HGISVGSLGRYPNEGDVRGLVVRD 286 (417)
Q Consensus 213 ~~~~~~DGi~~~~s~nv~I~n~~i~~gdD~i~i~s~s~nv~i~n~~~~~~------~gi~igs~~~~~~~~~v~ni~i~n 286 (417)
.| -+.... ..-..++|.|.+.=|-|- |.....+++|++..- .| .|-..++. ....-..+.|.|
T Consensus 353 QD-----TLy~~~-~Rqyy~~C~I~GtVDFIF---G~a~avf~~C~i~~~~~~~~~~~-~iTA~~r~-~~~~~~G~vf~~ 421 (539)
T PLN02995 353 QD-----TLMVHS-QRQFYRECYIYGTVDFIF---GNAAAVFQNCIILPRRPLKGQAN-VITAQGRA-DPFQNTGISIHN 421 (539)
T ss_pred cc-----hhccCC-CceEEEeeEEeeccceEe---cccceEEeccEEEEecCCCCCcc-eEecCCCC-CCCCCceEEEEe
Confidence 43 333333 456899999998766553 345788899988531 12 22111111 123346889999
Q ss_pred eEEecCceEE----EEEEecCCCCCeeEEeEEEEeEEEecC
Q 047315 287 STMTGTMNGV----RIKTWANSPGSSAATNMTFENIIMNNV 323 (417)
Q Consensus 287 ~~~~~~~~gi----~i~~~~~~~~g~~i~ni~~~ni~~~~~ 323 (417)
|++....... ..+.+-|+|..- -..++|.+..+.+.
T Consensus 422 c~i~~~~~~~~~~~~~~~yLGRPW~~-ysrvv~~~t~~~~~ 461 (539)
T PLN02995 422 SRILPAPDLKPVVRTVKTYMGRPWMK-FSRTVVLQTYLDNV 461 (539)
T ss_pred eEEecCCcccccccccceeccCCCCC-CcceEEEeccccCc
Confidence 9998754211 122333443333 47788888888664
No 56
>PLN02506 putative pectinesterase/pectinesterase inhibitor
Probab=97.77 E-value=0.0028 Score=65.23 Aligned_cols=206 Identities=20% Similarity=0.238 Sum_probs=116.1
Q ss_pred cHHHHHHHHHHHhhc-CCCeEEEecCCeeeEeeeEEecCccCccceEEeEecEEEeecCcccccCCCCeEEEcCceeeEE
Q 047315 61 DSKAFEAAWKEACET-TGAVTLLVPHGTYLIGPIKFAGPCKNVSNITVQMKGYLIASTNLSEYRFGAGWVEFGGVEGLTL 139 (417)
Q Consensus 61 dt~aiq~Al~~a~~~-~ggg~V~ip~GtY~~~~l~l~~~~~~~s~~~l~~~G~l~~~~~~~~~~~~~~~i~~~~~~nv~I 139 (417)
|-..||+||+++-.. .+.-+|+|.+|+|.-. +.++. .| .+++|.++|. +...|
T Consensus 243 ~f~TIq~Av~a~p~~~~~r~vI~Vk~GvY~E~-V~I~~-~k--~~i~l~G~g~----------------------~~tiI 296 (537)
T PLN02506 243 HYRTITEAINEAPNHSNRRYIIYVKKGVYKEN-IDMKK-KK--TNIMLVGDGI----------------------GQTVV 296 (537)
T ss_pred CccCHHHHHHhchhcCCCcEEEEEeCCeeeEE-EeccC-CC--ceEEEEEcCC----------------------CCeEE
Confidence 577899998654332 2346999999999733 22220 02 5677766651 11111
Q ss_pred ecCeEEcCCCcccccCCCCCCCCCCCCCcceEEEEeecceEEEeeEEecCCcc----eEEE-eceecEEEEeEEEECCCC
Q 047315 140 TGGGTFDGRGAKAWPYNGCPTHFNCKLLPTNVKFVAMKKTIVRRITSVNSKSF----HIAL-VECKNFRGSKIKISAPAN 214 (417)
Q Consensus 140 ~G~G~idg~g~~~~~~~~~~~~~~~~~~~~~i~~~~~~nv~I~~v~i~n~~~~----~i~~-~~~~~v~i~n~~i~~~~~ 214 (417)
++.... ..| |. .-...-....++++..+|++|.|.... .+-+ ..++...+.+|+|.+..
T Consensus 297 t~~~~~-~~g---~~-----------T~~saT~~v~~~~F~a~nit~~Ntag~~~~QAVAl~v~~D~~~fy~C~~~G~Q- 360 (537)
T PLN02506 297 TGNRNF-MQG---WT-----------TFRTATVAVSGRGFIARDITFRNTAGPQNHQAVALRVDSDQSAFYRCSMEGYQ- 360 (537)
T ss_pred EeCccc-cCC---CC-----------cccceEEEEEcCCeEEEeeEEEeCCCCCCCceEEEEecCCcEEEEcceeeccc-
Confidence 111000 001 00 002234556788999999999997422 3333 25788899999998743
Q ss_pred CCCCCeEEeecceeEEEEeeEEecCCceEEecCCceeEEEEeeEEcCC-----ceEEEcccccCCCCCcEEEEEEEeeEE
Q 047315 215 SPNTDGIHIERSSSVHVSRSHIGTGDDCISVGQGNSEVTIASITCGPG-----HGISVGSLGRYPNEGDVRGLVVRDSTM 289 (417)
Q Consensus 215 ~~~~DGi~~~~s~nv~I~n~~i~~gdD~i~i~s~s~nv~i~n~~~~~~-----~gi~igs~~~~~~~~~v~ni~i~n~~~ 289 (417)
|-+.... ..-..++|.|.+.=|-|- |.....++||++..- ..-.|-..++. ....-..+.|.||++
T Consensus 361 ----DTLy~~~-~rqyy~~C~I~GtVDFIF---G~a~avfq~C~i~~r~~~~~~~~~iTA~~r~-~~~~~~G~vf~~c~i 431 (537)
T PLN02506 361 ----DTLYAHS-LRQFYRECEIYGTIDFIF---GNGAAVLQNCKIYTRVPLPLQKVTITAQGRK-SPHQSTGFSIQDSYV 431 (537)
T ss_pred ----ccceecC-CceEEEeeEEecccceEc---cCceeEEeccEEEEccCCCCCCceEEccCCC-CCCCCcEEEEEcCEE
Confidence 3333333 456889999988655553 345788888888521 11122111111 122345788999988
Q ss_pred ecCceEEEEEEecCCCCCeeEEeEEEEeEEEecC
Q 047315 290 TGTMNGVRIKTWANSPGSSAATNMTFENIIMNNV 323 (417)
Q Consensus 290 ~~~~~gi~i~~~~~~~~g~~i~ni~~~ni~~~~~ 323 (417)
.... ...+ |++..- -..++|-+..+.+.
T Consensus 432 ~~~~-~~yL----GRPW~~-~sr~v~~~t~l~~~ 459 (537)
T PLN02506 432 LATQ-PTYL----GRPWKQ-YSRTVFMNTYMSQL 459 (537)
T ss_pred ccCC-ceEE----ecCCCC-CceEEEEecCCCCe
Confidence 7643 2333 332222 37777888777763
No 57
>PLN02468 putative pectinesterase/pectinesterase inhibitor
Probab=97.77 E-value=0.0025 Score=66.13 Aligned_cols=210 Identities=18% Similarity=0.186 Sum_probs=120.6
Q ss_pred cHHHHHHHHHHHhhc-CCCeEEEecCCeeeEeeeEEecCccCccceEEeEecEEEeecCcccccCCCCeEEEcCceeeEE
Q 047315 61 DSKAFEAAWKEACET-TGAVTLLVPHGTYLIGPIKFAGPCKNVSNITVQMKGYLIASTNLSEYRFGAGWVEFGGVEGLTL 139 (417)
Q Consensus 61 dt~aiq~Al~~a~~~-~ggg~V~ip~GtY~~~~l~l~~~~~~~s~~~l~~~G~l~~~~~~~~~~~~~~~i~~~~~~nv~I 139 (417)
+-..||+||+++-.. .+.-+|+|.+|+|.- .+.++-. | .+++|.++|. +...|
T Consensus 269 ~f~tI~~Av~a~p~~~~~~~vI~ik~GvY~E-~V~i~~~-k--~~i~~~G~g~----------------------~~tiI 322 (565)
T PLN02468 269 KYKTISEALKDVPEKSEKRTIIYVKKGVYFE-NVRVEKK-K--WNVVMVGDGM----------------------SKTIV 322 (565)
T ss_pred CccCHHHHHHhchhcCCCcEEEEEeCCceEE-EEEecCC-C--CeEEEEecCC----------------------CCCEE
Confidence 467899998654332 245699999999983 4444310 1 5677777651 11112
Q ss_pred ecCe-EEcCCCcccccCCCCCCCCCCCCCcceEEEEeecceEEEeeEEecCCcc----eEEE-eceecEEEEeEEEECCC
Q 047315 140 TGGG-TFDGRGAKAWPYNGCPTHFNCKLLPTNVKFVAMKKTIVRRITSVNSKSF----HIAL-VECKNFRGSKIKISAPA 213 (417)
Q Consensus 140 ~G~G-~idg~g~~~~~~~~~~~~~~~~~~~~~i~~~~~~nv~I~~v~i~n~~~~----~i~~-~~~~~v~i~n~~i~~~~ 213 (417)
+|.. ..||.. .| ...-.....+++..+|++|.|.... .+-+ ..++...+.+|+|.+..
T Consensus 323 t~~~~~~dg~~--t~--------------~saT~~v~~~~f~a~~itf~Ntag~~~~QAVAl~v~~D~~~fy~c~~~G~Q 386 (565)
T PLN02468 323 SGSLNFVDGTP--TF--------------STATFAVFGKGFMARDMGFRNTAGPIKHQAVALMSSADLSVFYRCTMDAFQ 386 (565)
T ss_pred EeCCccCCCCC--cc--------------ceeeeeEECCCeEEEEEEEEeCCCCCCCceEEEEEcCCcEEEEEeEEEecc
Confidence 2100 011111 11 1223444578999999999987432 3333 36788999999999744
Q ss_pred CCCCCCeEEeecceeEEEEeeEEecCCceEEecCCceeEEEEeeEEcCC-----ceEEEcccccCCCCCcEEEEEEEeeE
Q 047315 214 NSPNTDGIHIERSSSVHVSRSHIGTGDDCISVGQGNSEVTIASITCGPG-----HGISVGSLGRYPNEGDVRGLVVRDST 288 (417)
Q Consensus 214 ~~~~~DGi~~~~s~nv~I~n~~i~~gdD~i~i~s~s~nv~i~n~~~~~~-----~gi~igs~~~~~~~~~v~ni~i~n~~ 288 (417)
| -+.... ..-..++|.|.+.=|-|- |...+.++||.+..- ..-.|-..++. ....-..+.|.||+
T Consensus 387 D-----TLy~~~-~rq~y~~C~I~GtvDFIF---G~a~avfq~c~i~~~~~~~~~~~~iTA~~r~-~~~~~~G~vf~~c~ 456 (565)
T PLN02468 387 D-----TLYAHA-QRQFYRECNIYGTVDFIF---GNSAVVFQNCNILPRRPMKGQQNTITAQGRT-DPNQNTGISIQNCT 456 (565)
T ss_pred c-----hhccCC-CceEEEeeEEecccceee---ccceEEEeccEEEEecCCCCCCceEEecCCC-CCCCCceEEEEccE
Confidence 3 333333 456799999998756553 345889999988421 11122111111 22344578999999
Q ss_pred EecCceEEEEEEecCCCCCeeEEeEEEEeEEEecC
Q 047315 289 MTGTMNGVRIKTWANSPGSSAATNMTFENIIMNNV 323 (417)
Q Consensus 289 ~~~~~~gi~i~~~~~~~~g~~i~ni~~~ni~~~~~ 323 (417)
+......-..+++-|+|..- -+.++|.+..+.+.
T Consensus 457 i~~~~~~~~~~~yLGRPW~~-~sr~v~~~s~~~~~ 490 (565)
T PLN02468 457 ILPLGDLTSVKTFLGRPWKN-YSTTVIMHSMMGSL 490 (565)
T ss_pred EecCCCccccceeeecCCCC-CceEEEEecccCCe
Confidence 98754322233333444333 46778888877764
No 58
>PLN02201 probable pectinesterase/pectinesterase inhibitor
Probab=97.77 E-value=0.0046 Score=63.26 Aligned_cols=208 Identities=18% Similarity=0.208 Sum_probs=119.8
Q ss_pred cHHHHHHHHHHHhhc-CCCeEEEecCCeeeEeeeEEecCccCccceEEeEecEEEeecCcccccCCCCeEEEcCceeeEE
Q 047315 61 DSKAFEAAWKEACET-TGAVTLLVPHGTYLIGPIKFAGPCKNVSNITVQMKGYLIASTNLSEYRFGAGWVEFGGVEGLTL 139 (417)
Q Consensus 61 dt~aiq~Al~~a~~~-~ggg~V~ip~GtY~~~~l~l~~~~~~~s~~~l~~~G~l~~~~~~~~~~~~~~~i~~~~~~nv~I 139 (417)
|-..||+||+++-.. ...-+|+|.+|+|. ..+.++.. | .+++|+++|. +...|
T Consensus 217 ~f~TIq~Ai~a~P~~~~~r~vI~Ik~GvY~-E~V~I~~~-k--~~i~l~G~g~----------------------~~TiI 270 (520)
T PLN02201 217 NFTTIMDAVLAAPDYSTKRYVIYIKKGVYL-ENVEIKKK-K--WNIMMVGDGI----------------------DATVI 270 (520)
T ss_pred CccCHHHHHHhchhcCCCcEEEEEeCceeE-EEEEecCC-C--ceEEEEecCC----------------------CCcEE
Confidence 577899998654322 23468999999997 34444311 1 5677777751 11111
Q ss_pred ecCe-EEcCCCcccccCCCCCCCCCCCCCcceEEEEeecceEEEeeEEecCCc----ceEEEe-ceecEEEEeEEEECCC
Q 047315 140 TGGG-TFDGRGAKAWPYNGCPTHFNCKLLPTNVKFVAMKKTIVRRITSVNSKS----FHIALV-ECKNFRGSKIKISAPA 213 (417)
Q Consensus 140 ~G~G-~idg~g~~~~~~~~~~~~~~~~~~~~~i~~~~~~nv~I~~v~i~n~~~----~~i~~~-~~~~v~i~n~~i~~~~ 213 (417)
++.. ..+| |. .-...-.....+++..+|++|.|... ..+-+. .++...+.+|+|.+.
T Consensus 271 t~~~~~~~g-----~~-----------T~~SAT~~v~~~~F~a~nitf~Ntag~~~~QAVAlrv~~D~~~fy~C~f~G~- 333 (520)
T PLN02201 271 TGNRSFIDG-----WT-----------TFRSATFAVSGRGFIARDITFQNTAGPEKHQAVALRSDSDLSVFYRCAMRGY- 333 (520)
T ss_pred EeCCccCCC-----Cc-----------ccceEEEEEECCCeEEEeeEEEECCCCCCCceEEEEEcCCcEEEEeeeeecc-
Confidence 1100 0011 00 00223445668899999999998743 233333 577889999999973
Q ss_pred CCCCCCeEEeecceeEEEEeeEEecCCceEEecCCceeEEEEeeEEcCC------ce-EEEcccccCCCCCcEEEEEEEe
Q 047315 214 NSPNTDGIHIERSSSVHVSRSHIGTGDDCISVGQGNSEVTIASITCGPG------HG-ISVGSLGRYPNEGDVRGLVVRD 286 (417)
Q Consensus 214 ~~~~~DGi~~~~s~nv~I~n~~i~~gdD~i~i~s~s~nv~i~n~~~~~~------~g-i~igs~~~~~~~~~v~ni~i~n 286 (417)
.|-+.... ..-..++|.|.+.=|-|- |.....++||++..- .| +..- ++ .....-..+.|.|
T Consensus 334 ----QDTLy~~~-~Rqyy~~C~I~GtVDFIF---G~a~avf~~C~i~~~~~~~~~~~~iTAq--~r-~~~~~~~Gfvf~~ 402 (520)
T PLN02201 334 ----QDTLYTHT-MRQFYRECRITGTVDFIF---GDATAVFQNCQILAKKGLPNQKNTITAQ--GR-KDPNQPTGFSIQF 402 (520)
T ss_pred ----CCeeEeCC-CCEEEEeeEEeecccEEe---cCceEEEEccEEEEecCCCCCCceEEec--CC-CCCCCCcEEEEEe
Confidence 34444443 456789999998766553 345788999987531 12 2221 11 1223345788999
Q ss_pred eEEecCceEE----EEEEecCCCCCeeEEeEEEEeEEEecC
Q 047315 287 STMTGTMNGV----RIKTWANSPGSSAATNMTFENIIMNNV 323 (417)
Q Consensus 287 ~~~~~~~~gi----~i~~~~~~~~g~~i~ni~~~ni~~~~~ 323 (417)
|++....... ..+.+-|++..- -+.+.|.+..|.+.
T Consensus 403 C~it~~~~~~~~~~~~~~yLGRPW~~-ysrvv~~~t~l~~~ 442 (520)
T PLN02201 403 SNISADTDLLPYLNTTATYLGRPWKL-YSRTVFMQNYMSDA 442 (520)
T ss_pred eEEecCccccccccccceEeecCCCC-CceEEEEecCcCCe
Confidence 9997643211 112233333332 47788888888764
No 59
>PLN02933 Probable pectinesterase/pectinesterase inhibitor
Probab=97.76 E-value=0.0063 Score=62.30 Aligned_cols=209 Identities=15% Similarity=0.176 Sum_probs=119.8
Q ss_pred cHHHHHHHHHHHhhc-CCCeEEEecCCeeeEeeeEEecCccCccceEEeEecEEEeecCcccccCCCCeEEEcCceeeEE
Q 047315 61 DSKAFEAAWKEACET-TGAVTLLVPHGTYLIGPIKFAGPCKNVSNITVQMKGYLIASTNLSEYRFGAGWVEFGGVEGLTL 139 (417)
Q Consensus 61 dt~aiq~Al~~a~~~-~ggg~V~ip~GtY~~~~l~l~~~~~~~s~~~l~~~G~l~~~~~~~~~~~~~~~i~~~~~~nv~I 139 (417)
|-..||+||+++-.. ...-+|+|.+|+|. ..+.++.. | .+++|+++|. +...|
T Consensus 229 ~f~TIq~Ai~a~P~~~~~r~vI~Ik~GvY~-E~V~I~~~-k--~~itl~G~g~----------------------~~TiI 282 (530)
T PLN02933 229 NFTTINEAVSAAPNSSETRFIIYIKGGEYF-ENVELPKK-K--TMIMFIGDGI----------------------GKTVI 282 (530)
T ss_pred CccCHHHHHHhchhcCCCcEEEEEcCceEE-EEEEecCC-C--ceEEEEEcCC----------------------CCcEE
Confidence 577899998754322 23468999999998 44555411 2 5677777751 11111
Q ss_pred ecCe-EEcCCCcccccCCCCCCCCCCCCCcceEEEEeecceEEEeeEEecCCc----ceEEEe-ceecEEEEeEEEECCC
Q 047315 140 TGGG-TFDGRGAKAWPYNGCPTHFNCKLLPTNVKFVAMKKTIVRRITSVNSKS----FHIALV-ECKNFRGSKIKISAPA 213 (417)
Q Consensus 140 ~G~G-~idg~g~~~~~~~~~~~~~~~~~~~~~i~~~~~~nv~I~~v~i~n~~~----~~i~~~-~~~~v~i~n~~i~~~~ 213 (417)
++.. ..+| |. .....-.....+++..+|++|.|... ..+-+. .++...+.+|+|.+..
T Consensus 283 t~~~~~~dg-----~~-----------T~~SaT~~v~a~~F~a~nitf~Ntag~~~~QAVAlrv~~Dra~fy~C~f~G~Q 346 (530)
T PLN02933 283 KANRSRIDG-----WS-----------TFQTATVGVKGKGFIAKDISFVNYAGPAKHQAVALRSGSDHSAFYRCEFDGYQ 346 (530)
T ss_pred EeCCccCCC-----Cc-----------cccceEEEEECCCEEEEeeEEEECCCCCCCceEEEEEcCCcEEEEEeEEEecc
Confidence 1100 0011 10 01223455678899999999998743 233333 5788899999999743
Q ss_pred CCCCCCeEEeecceeEEEEeeEEecCCceEEecCCceeEEEEeeEEcCC------ceEEEcccccCCCCCcEEEEEEEee
Q 047315 214 NSPNTDGIHIERSSSVHVSRSHIGTGDDCISVGQGNSEVTIASITCGPG------HGISVGSLGRYPNEGDVRGLVVRDS 287 (417)
Q Consensus 214 ~~~~~DGi~~~~s~nv~I~n~~i~~gdD~i~i~s~s~nv~i~n~~~~~~------~gi~igs~~~~~~~~~v~ni~i~n~ 287 (417)
|-+.... ..-.+++|.|.+.=|-|- |.....++||++..- .+ .|-..++ .....-..+.|.||
T Consensus 347 -----DTLy~~~-~Rqyy~~C~IeGtVDFIF---G~a~avFq~C~i~~~~~~~~~~~-~iTAq~r-~~~~~~tGfvf~~C 415 (530)
T PLN02933 347 -----DTLYVHS-AKQFYRECDIYGTIDFIF---GNAAVVFQNCSLYARKPNPNHKI-AFTAQSR-NQSDQPTGISIISS 415 (530)
T ss_pred -----cccccCC-CceEEEeeEEecccceec---cCceEEEeccEEEEeccCCCCce-EEEecCC-CCCCCCceEEEEee
Confidence 3333333 356899999998655543 345788888887421 12 1211111 11233457899999
Q ss_pred EEecCceEEE----EEEecCCCCCeeEEeEEEEeEEEecC
Q 047315 288 TMTGTMNGVR----IKTWANSPGSSAATNMTFENIIMNNV 323 (417)
Q Consensus 288 ~~~~~~~gi~----i~~~~~~~~g~~i~ni~~~ni~~~~~ 323 (417)
++........ .+.+-|++..- -..++|.+..+.+.
T Consensus 416 ~it~~~~~~~~~~~~~~yLGRPW~~-ysrvVf~~s~l~~~ 454 (530)
T PLN02933 416 RILAAPDLIPVKENFKAYLGRPWRK-YSRTVIIKSFIDDL 454 (530)
T ss_pred EEecCCcccccccccceEeccCCCC-CceEEEEecccCCe
Confidence 9987432111 12333433332 37788888888764
No 60
>PLN02745 Putative pectinesterase/pectinesterase inhibitor
Probab=97.73 E-value=0.0042 Score=64.75 Aligned_cols=208 Identities=13% Similarity=0.148 Sum_probs=120.8
Q ss_pred cHHHHHHHHHHHhhc-CCCeEEEecCCeeeEeeeEEecCccCccceEEeEecEEEeecCcccccCCCCeEEEcCceeeEE
Q 047315 61 DSKAFEAAWKEACET-TGAVTLLVPHGTYLIGPIKFAGPCKNVSNITVQMKGYLIASTNLSEYRFGAGWVEFGGVEGLTL 139 (417)
Q Consensus 61 dt~aiq~Al~~a~~~-~ggg~V~ip~GtY~~~~l~l~~~~~~~s~~~l~~~G~l~~~~~~~~~~~~~~~i~~~~~~nv~I 139 (417)
|-..||+||+++-.. ...-+|+|.+|+|.- .+.++.. | .+++|+++|. +...|
T Consensus 296 ~f~TIq~Ai~a~P~~~~~r~vI~Ik~GvY~E-~V~I~~~-k--~~i~l~G~g~----------------------~~TiI 349 (596)
T PLN02745 296 NFTTISDALAAMPAKYEGRYVIYVKQGIYDE-TVTVDKK-M--VNVTMYGDGS----------------------QKTIV 349 (596)
T ss_pred CcccHHHHHHhccccCCceEEEEEeCCeeEE-EEEEcCC-C--ceEEEEecCC----------------------CceEE
Confidence 577899998654222 234689999999983 3444311 2 5777777761 11111
Q ss_pred ecCeE-EcCCCcccccCCCCCCCCCCCCCcceEEEEeecceEEEeeEEecCCc----ceEEE-eceecEEEEeEEEECCC
Q 047315 140 TGGGT-FDGRGAKAWPYNGCPTHFNCKLLPTNVKFVAMKKTIVRRITSVNSKS----FHIAL-VECKNFRGSKIKISAPA 213 (417)
Q Consensus 140 ~G~G~-idg~g~~~~~~~~~~~~~~~~~~~~~i~~~~~~nv~I~~v~i~n~~~----~~i~~-~~~~~v~i~n~~i~~~~ 213 (417)
+|... .+|.+ + . ...-.....+++..+|++|.|... ..+-+ ..++...+.+|+|.+..
T Consensus 350 t~~~~~~~g~~-T--------------~-~saT~~v~~~~F~a~nitf~Ntag~~~~QAVAl~v~~Dr~~f~~c~~~G~Q 413 (596)
T PLN02745 350 TGNKNFADGVR-T--------------F-RTATFVALGEGFMAKSMGFRNTAGPEKHQAVAIRVQSDRSIFLNCRFEGYQ 413 (596)
T ss_pred EECCcccCCCc-c--------------e-eeEEEEEEcCCEEEEeeEEEECCCCCCCceEEEEEcCCcEEEEeeEEeecc
Confidence 11000 00100 0 0 123444578899999999999742 23333 36788999999999844
Q ss_pred CCCCCCeEEeecceeEEEEeeEEecCCceEEecCCceeEEEEeeEEcCC------ce-EEEcccccCCCCCcEEEEEEEe
Q 047315 214 NSPNTDGIHIERSSSVHVSRSHIGTGDDCISVGQGNSEVTIASITCGPG------HG-ISVGSLGRYPNEGDVRGLVVRD 286 (417)
Q Consensus 214 ~~~~~DGi~~~~s~nv~I~n~~i~~gdD~i~i~s~s~nv~i~n~~~~~~------~g-i~igs~~~~~~~~~v~ni~i~n 286 (417)
| -+... ..+-.+++|.|.+.=|-|- |.....++||++..- .| +.-- ++ .....-..+.|.|
T Consensus 414 D-----TLy~~-~~Rqyy~~C~I~GtVDFIF---G~a~avf~~C~i~~~~~~~~~~~~iTAq--~r-~~~~~~~Gfvf~~ 481 (596)
T PLN02745 414 D-----TLYAQ-THRQFYRSCVITGTIDFIF---GDAAAIFQNCLIFVRKPLPNQQNTVTAQ--GR-VDKFETTGIVLQN 481 (596)
T ss_pred c-----ccccC-CCcEEEEeeEEEeeccEEe---cceeEEEEecEEEEecCCCCCCceEEec--CC-CCCCCCceEEEEe
Confidence 3 33333 3467899999998766443 346889999988531 12 2221 11 1223346789999
Q ss_pred eEEecCceEE----EEEEecCCCCCeeEEeEEEEeEEEecC
Q 047315 287 STMTGTMNGV----RIKTWANSPGSSAATNMTFENIIMNNV 323 (417)
Q Consensus 287 ~~~~~~~~gi----~i~~~~~~~~g~~i~ni~~~ni~~~~~ 323 (417)
|++....... ..+++-|++..- -..+.|.+..+.+.
T Consensus 482 c~i~~~~~~~~~~~~~~~yLGRPW~~-ysrvv~~~s~l~~~ 521 (596)
T PLN02745 482 CRIAPDEDLKPVKTEVKSYLGRPWKE-FSRTIVMESTIEDV 521 (596)
T ss_pred eEEecCccccccccccceeccCCCCC-CccEEEEecccCCe
Confidence 9998754211 123344443333 47788888877753
No 61
>PF01095 Pectinesterase: Pectinesterase; InterPro: IPR000070 Pectinesterase 3.1.1.11 from EC (pectin methylesterase) catalyses the de-esterification of pectin into pectate and methanol. Pectin is one of the main components of the plant cell wall. In plants, pectinesterase plays an important role in cell wall metabolism during fruit ripening. In plant bacterial pathogens such as Erwinia carotovora and in fungal pathogens such as Aspergillus niger, pectinesterase is involved in maceration and soft-rotting of plant tissue. Plant pectinesterases are regulated by pectinesterase inhibitors, which are ineffective against microbial enzymes []. Prokaryotic and eukaryotic pectinesterases share a few regions of sequence similarity. The crystal structure of pectinesterase from Erwinia chrysanthemi revealed a beta-helix structure similar to that found in pectinolytic enzymes, though it is different from most structures of esterases []. The putative catalytic residues are in a similar location to those of the active site and substrate-binding cleft of pectate lyase.; GO: 0030599 pectinesterase activity, 0042545 cell wall modification, 0005618 cell wall; PDB: 1QJV_B 1XG2_A 1GQ8_A 2NTQ_A 2NTP_A 2NT9_A 2NT6_B 2NSP_B 2NTB_A 2NST_A ....
Probab=97.72 E-value=0.0015 Score=62.45 Aligned_cols=207 Identities=18% Similarity=0.207 Sum_probs=101.4
Q ss_pred ccHHHHHHHHHHHhhcC-CCeEEEecCCeeeEeeeEEecCccCccceEEeEecEEEeecCcccccCCCCeEEEcCceeeE
Q 047315 60 DDSKAFEAAWKEACETT-GAVTLLVPHGTYLIGPIKFAGPCKNVSNITVQMKGYLIASTNLSEYRFGAGWVEFGGVEGLT 138 (417)
Q Consensus 60 Ddt~aiq~Al~~a~~~~-ggg~V~ip~GtY~~~~l~l~~~~~~~s~~~l~~~G~l~~~~~~~~~~~~~~~i~~~~~~nv~ 138 (417)
-|-..||+||+++-... ..-+|+|.||+|. ..+.++.. | .+++|.+++ .....
T Consensus 10 gdf~TIq~Aida~p~~~~~~~~I~I~~G~Y~-E~V~i~~~-k--~~v~l~G~~----------------------~~~ti 63 (298)
T PF01095_consen 10 GDFTTIQAAIDAAPDNNTSRYTIFIKPGTYR-EKVTIPRS-K--PNVTLIGEG----------------------RDKTI 63 (298)
T ss_dssp SSBSSHHHHHHHS-SSSSS-EEEEE-SEEEE---EEE-ST-S--TTEEEEES-----------------------TTTEE
T ss_pred CCccCHHHHHHhchhcCCceEEEEEeCeeEc-cccEeccc-c--ceEEEEecC----------------------CCceE
Confidence 46778999987543222 2358999999998 33444411 1 467776664 01112
Q ss_pred EecCeEEcCCCcccccCCCCCCCCCCCCCcceEEEEeecceEEEeeEEecCCcc------eEEEeceecEEEEeEEEECC
Q 047315 139 LTGGGTFDGRGAKAWPYNGCPTHFNCKLLPTNVKFVAMKKTIVRRITSVNSKSF------HIALVECKNFRGSKIKISAP 212 (417)
Q Consensus 139 I~G~G~idg~g~~~~~~~~~~~~~~~~~~~~~i~~~~~~nv~I~~v~i~n~~~~------~i~~~~~~~v~i~n~~i~~~ 212 (417)
|.+.... ..+...+ +. .......+++.+++|+|.|.... ++.+ .++...+.+|++.+.
T Consensus 64 I~~~~~~-~~~~~t~-------------~s-aT~~v~a~~f~~~nit~~Nt~g~~~~qAvAl~~-~~d~~~f~~c~~~g~ 127 (298)
T PF01095_consen 64 ITGNDNA-ADGGGTF-------------RS-ATFSVNADDFTAENITFENTAGPSGGQAVALRV-SGDRAAFYNCRFLGY 127 (298)
T ss_dssp EEE---T-TTB-HCG-------------GC--SEEE-STT-EEEEEEEEEHCSGSG----SEEE-T-TSEEEEEEEEE-S
T ss_pred EEEeccc-ccccccc-------------cc-ccccccccceeeeeeEEecCCCCcccceeeeee-cCCcEEEEEeEEccc
Confidence 2220000 0000001 11 12334688999999999986322 3333 557788888888873
Q ss_pred CCCCCCCeEEeecceeEEEEeeEEecCCceEEecCCceeEEEEeeEEcCC-----ceEEEcccccCCCCCcEEEEEEEee
Q 047315 213 ANSPNTDGIHIERSSSVHVSRSHIGTGDDCISVGQGNSEVTIASITCGPG-----HGISVGSLGRYPNEGDVRGLVVRDS 287 (417)
Q Consensus 213 ~~~~~~DGi~~~~s~nv~I~n~~i~~gdD~i~i~s~s~nv~i~n~~~~~~-----~gi~igs~~~~~~~~~v~ni~i~n~ 287 (417)
.|-+.... .+..++||.|...-|-|-= .....+++|++... ..-.|-..++ .....-....|.||
T Consensus 128 -----QDTL~~~~-~r~y~~~c~IeG~vDFIfG---~~~a~f~~c~i~~~~~~~~~~~~ItA~~r-~~~~~~~G~vF~~c 197 (298)
T PF01095_consen 128 -----QDTLYANG-GRQYFKNCYIEGNVDFIFG---NGTAVFENCTIHSRRPGGGQGGYITAQGR-TSPSQKSGFVFDNC 197 (298)
T ss_dssp -----TT-EEE-S-SEEEEES-EEEESEEEEEE---SSEEEEES-EEEE--SSTSSTEEEEEE----CTTSS-EEEEES-
T ss_pred -----cceeeecc-ceeEEEeeEEEecCcEEEC---CeeEEeeeeEEEEeccccccceeEEeCCc-cccCCCeEEEEEEe
Confidence 44454443 4678888888887666643 33677888887521 1112211111 01233456788888
Q ss_pred EEecCc--------eEEEEEEecCCCCCeeEEeEEEEeEEEecC
Q 047315 288 TMTGTM--------NGVRIKTWANSPGSSAATNMTFENIIMNNV 323 (417)
Q Consensus 288 ~~~~~~--------~gi~i~~~~~~~~g~~i~ni~~~ni~~~~~ 323 (417)
++.... ....+. ++.+- -..++|.|..|.+.
T Consensus 198 ~i~~~~~~~~~~~~~~~yLG----RpW~~-~s~vvf~~t~m~~~ 236 (298)
T PF01095_consen 198 TITGDSGVSPSYSDGSVYLG----RPWGP-YSRVVFINTYMDDH 236 (298)
T ss_dssp EEEESTTTCGGCCCSTEEEE------SSE-ETEEEEES-EE-TT
T ss_pred EEecCccccccccceeEEec----Ccccc-eeeEEEEccccCCe
Confidence 887642 123332 22222 36788888888764
No 62
>PLN02217 probable pectinesterase/pectinesterase inhibitor
Probab=97.71 E-value=0.0038 Score=65.54 Aligned_cols=210 Identities=13% Similarity=0.140 Sum_probs=122.6
Q ss_pred cHHHHHHHHHHHhhc-CCCeEEEecCCeeeEeeeEEecCccCccceEEeEecEEEeecCcccccCCCCeEEEcCceeeEE
Q 047315 61 DSKAFEAAWKEACET-TGAVTLLVPHGTYLIGPIKFAGPCKNVSNITVQMKGYLIASTNLSEYRFGAGWVEFGGVEGLTL 139 (417)
Q Consensus 61 dt~aiq~Al~~a~~~-~ggg~V~ip~GtY~~~~l~l~~~~~~~s~~~l~~~G~l~~~~~~~~~~~~~~~i~~~~~~nv~I 139 (417)
|-..||+||+++-.. ...-+|+|.+|+|.- .+.++.. | .+++|+++|. +...|
T Consensus 261 ~f~TIq~Av~a~P~~~~~r~vI~Ik~GvY~E-~V~I~~~-k--~~i~l~Gdg~----------------------~~TiI 314 (670)
T PLN02217 261 QYKTINEALNFVPKKKNTTFVVHIKAGIYKE-YVQVNRS-M--THLVFIGDGP----------------------DKTVI 314 (670)
T ss_pred CccCHHHHHHhccccCCceEEEEEeCCceEE-EEEEcCC-C--CcEEEEecCC----------------------CCeEE
Confidence 577899998654221 234589999999984 3334310 1 4666666651 11112
Q ss_pred ecCe-EEcCCCcccccCCCCCCCCCCCCCcceEEEEeecceEEEeeEEecCCc----ceEEEe-ceecEEEEeEEEECCC
Q 047315 140 TGGG-TFDGRGAKAWPYNGCPTHFNCKLLPTNVKFVAMKKTIVRRITSVNSKS----FHIALV-ECKNFRGSKIKISAPA 213 (417)
Q Consensus 140 ~G~G-~idg~g~~~~~~~~~~~~~~~~~~~~~i~~~~~~nv~I~~v~i~n~~~----~~i~~~-~~~~v~i~n~~i~~~~ 213 (417)
+|.- .-+|.+ + . ...-.....+++..+|++|.|... ..+-+. .++...+.+|+|.+..
T Consensus 315 t~~~~~~dg~~-T--------------~-~SAT~~v~g~~F~a~nitf~Ntag~~~~QAVAlrv~~Dra~fy~C~f~G~Q 378 (670)
T PLN02217 315 SGSKSYKDGIT-T--------------Y-KTATVAIVGDHFIAKNIGFENTAGAIKHQAVAIRVLSDESIFYNCKFDGYQ 378 (670)
T ss_pred EcCCccCCCCC-c--------------c-ceEEEEEECCCeEEEeeEEEeCCCCCCCceEEEEecCCcEEEEcceeeecc
Confidence 1100 001100 0 0 123344568899999999999743 233333 6789999999999743
Q ss_pred CCCCCCeEEeecceeEEEEeeEEecCCceEEecCCceeEEEEeeEEcCC-----ceEEEcccccCCCCCcEEEEEEEeeE
Q 047315 214 NSPNTDGIHIERSSSVHVSRSHIGTGDDCISVGQGNSEVTIASITCGPG-----HGISVGSLGRYPNEGDVRGLVVRDST 288 (417)
Q Consensus 214 ~~~~~DGi~~~~s~nv~I~n~~i~~gdD~i~i~s~s~nv~i~n~~~~~~-----~gi~igs~~~~~~~~~v~ni~i~n~~ 288 (417)
|-+.... .+-.+++|.|.+.=|-|- |.....++||++..- ..-.|-..++ .....-..+.|.||+
T Consensus 379 -----DTLy~~~-~Rqyy~~C~I~GtVDFIF---G~a~avfq~C~I~~r~~~~~~~~~ITAqgr-~~~~~~tGfvf~~C~ 448 (670)
T PLN02217 379 -----DTLYAHS-HRQFYRDCTISGTIDFLF---GDAAAVFQNCTLLVRKPLLNQACPITAHGR-KDPRESTGFVLQGCT 448 (670)
T ss_pred -----chhccCC-CcEEEEeCEEEEeccEEe---cCceEEEEccEEEEccCCCCCceeEecCCC-CCCCCCceEEEEeeE
Confidence 3333333 567999999998656553 345799999998531 1122322221 122345679999999
Q ss_pred EecCceEE----EEEEecCCCCCeeEEeEEEEeEEEecC
Q 047315 289 MTGTMNGV----RIKTWANSPGSSAATNMTFENIIMNNV 323 (417)
Q Consensus 289 ~~~~~~gi----~i~~~~~~~~g~~i~ni~~~ni~~~~~ 323 (417)
+.....-+ ..+.+-|++..- -..+.|.+..|.+.
T Consensus 449 i~~~~~~~~~~~~~~~yLGRPW~~-ysrvVf~~t~l~~~ 486 (670)
T PLN02217 449 IVGEPDYLAVKETSKAYLGRPWKE-YSRTIIMNTFIPDF 486 (670)
T ss_pred EecCccccccccccceeeccCCCC-CceEEEEecccCCe
Confidence 98864211 112333443333 47888888888753
No 63
>PLN02416 probable pectinesterase/pectinesterase inhibitor
Probab=97.70 E-value=0.0041 Score=64.13 Aligned_cols=210 Identities=17% Similarity=0.213 Sum_probs=118.0
Q ss_pred cHHHHHHHHHHHhhcC-CCeEEEecCCeeeEeeeEEecCccCccceEEeEecEEEeecCcccccCCCCeEEEcCceeeEE
Q 047315 61 DSKAFEAAWKEACETT-GAVTLLVPHGTYLIGPIKFAGPCKNVSNITVQMKGYLIASTNLSEYRFGAGWVEFGGVEGLTL 139 (417)
Q Consensus 61 dt~aiq~Al~~a~~~~-ggg~V~ip~GtY~~~~l~l~~~~~~~s~~~l~~~G~l~~~~~~~~~~~~~~~i~~~~~~nv~I 139 (417)
|-..||+||+++-... ..-+|+|.+|+|.- .+.++. .| .+++|.++|. +...|
T Consensus 241 ~f~TIq~Ai~a~p~~~~~r~vI~Ik~GvY~E-~V~i~~-~k--~~i~l~G~g~----------------------~~TiI 294 (541)
T PLN02416 241 NFSTITDAINFAPNNSNDRIIIYVREGVYEE-NVEIPI-YK--TNIVLIGDGS----------------------DVTFI 294 (541)
T ss_pred CccCHHHHHHhhhhcCCceEEEEEeCceeEE-EEecCC-CC--ccEEEEecCC----------------------CceEE
Confidence 5778999986543322 33578999999973 334421 02 6777777761 11111
Q ss_pred ecCe-EEcCCCcccccCCCCCCCCCCCCCcceEEEEeecceEEEeeEEecCCcc----eEEE-eceecEEEEeEEEECCC
Q 047315 140 TGGG-TFDGRGAKAWPYNGCPTHFNCKLLPTNVKFVAMKKTIVRRITSVNSKSF----HIAL-VECKNFRGSKIKISAPA 213 (417)
Q Consensus 140 ~G~G-~idg~g~~~~~~~~~~~~~~~~~~~~~i~~~~~~nv~I~~v~i~n~~~~----~i~~-~~~~~v~i~n~~i~~~~ 213 (417)
+|.. ..+| |. .. ...-.....+++..+|++|.|.... .+-+ ..++...+.+|+|.+..
T Consensus 295 t~~~~~~~g-----~~----------T~-~saT~~v~~~~F~a~nitf~Ntag~~~~QAVAl~v~~D~~~fy~c~~~G~Q 358 (541)
T PLN02416 295 TGNRSVVDG-----WT----------TF-RSATLAVSGEGFLARDITIENTAGPEKHQAVALRVNADLVALYRCTINGYQ 358 (541)
T ss_pred eCCCccCCC-----CC----------cc-ceEEEEEECCCeEEEeeEEEECCCCCCCceEEEEEcCccEEEEcceEeccc
Confidence 1110 0011 11 01 1233444588999999999987432 2333 25788899999998744
Q ss_pred CCCCCCeEEeecceeEEEEeeEEecCCceEEecCCceeEEEEeeEEcCC---ce--EEEcccccCCCCCcEEEEEEEeeE
Q 047315 214 NSPNTDGIHIERSSSVHVSRSHIGTGDDCISVGQGNSEVTIASITCGPG---HG--ISVGSLGRYPNEGDVRGLVVRDST 288 (417)
Q Consensus 214 ~~~~~DGi~~~~s~nv~I~n~~i~~gdD~i~i~s~s~nv~i~n~~~~~~---~g--i~igs~~~~~~~~~v~ni~i~n~~ 288 (417)
| -+... +..-.+++|.|.+.=|-|- |.....++||++..- .| -.|-..++ .....-..+.|.||+
T Consensus 359 D-----TLy~~-~~Rqyy~~C~I~GtVDFIF---G~a~avfq~c~i~~~~~~~~~~~~iTA~~r-~~~~~~~G~vf~~c~ 428 (541)
T PLN02416 359 D-----TLYVH-SFRQFYRECDIYGTIDYIF---GNAAVVFQACNIVSKMPMPGQFTVITAQSR-DTPDEDTGISIQNCS 428 (541)
T ss_pred c-----hhccC-CCceEEEeeEEeeccceee---ccceEEEeccEEEEecCCCCCceEEECCCC-CCCCCCCEEEEEeeE
Confidence 3 33333 3456889999998666553 345788888888531 11 12211111 122334578899999
Q ss_pred EecCceEE----EEEEecCCCCCeeEEeEEEEeEEEecC
Q 047315 289 MTGTMNGV----RIKTWANSPGSSAATNMTFENIIMNNV 323 (417)
Q Consensus 289 ~~~~~~gi----~i~~~~~~~~g~~i~ni~~~ni~~~~~ 323 (417)
+.....-. ..+++-|++..- -..++|.+..+.+.
T Consensus 429 i~~~~~~~~~~~~~~~yLGRPW~~-~sr~v~~~s~i~~~ 466 (541)
T PLN02416 429 ILATEDLYSNSNSVKSYLGRPWRV-YSRTVVLESYIDDF 466 (541)
T ss_pred EecCCccccccccccccccCCCCC-CccEEEEecccCCe
Confidence 97653210 123333443332 37777888777663
No 64
>PLN03043 Probable pectinesterase/pectinesterase inhibitor; Provisional
Probab=97.69 E-value=0.007 Score=62.46 Aligned_cols=208 Identities=14% Similarity=0.177 Sum_probs=121.4
Q ss_pred cHHHHHHHHHHHhhcC----CCeEEEecCCeeeEeeeEEecCccCccceEEeEecEEEeecCcccccCCCCeEEEcCcee
Q 047315 61 DSKAFEAAWKEACETT----GAVTLLVPHGTYLIGPIKFAGPCKNVSNITVQMKGYLIASTNLSEYRFGAGWVEFGGVEG 136 (417)
Q Consensus 61 dt~aiq~Al~~a~~~~----ggg~V~ip~GtY~~~~l~l~~~~~~~s~~~l~~~G~l~~~~~~~~~~~~~~~i~~~~~~n 136 (417)
+-..||+||+++-... +.-+|+|.+|+|.- .+.++.. | .+++|.++|. +.
T Consensus 234 ~f~TI~~Av~a~p~~~~~~~~r~vI~vk~G~Y~E-~V~i~~~-k--~~i~l~G~g~----------------------~~ 287 (538)
T PLN03043 234 NFTTITDAIAAAPNNSKPEDGYFVIYAREGYYEE-YVVVPKN-K--KNIMLIGDGI----------------------NK 287 (538)
T ss_pred CCcCHHHHHHhccccCCCCcceEEEEEcCeeeEE-EEEeCCC-C--CcEEEEecCC----------------------CC
Confidence 5778999986442221 13489999999973 3444311 2 6777777751 11
Q ss_pred eEEecCe-EEcCCCcccccCCCCCCCCCCCCCcceEEEEeecceEEEeeEEecCCc----ceEEEe-ceecEEEEeEEEE
Q 047315 137 LTLTGGG-TFDGRGAKAWPYNGCPTHFNCKLLPTNVKFVAMKKTIVRRITSVNSKS----FHIALV-ECKNFRGSKIKIS 210 (417)
Q Consensus 137 v~I~G~G-~idg~g~~~~~~~~~~~~~~~~~~~~~i~~~~~~nv~I~~v~i~n~~~----~~i~~~-~~~~v~i~n~~i~ 210 (417)
..|+|.- ..|| |.. . ..+......+++..+|++|.|... -.+-+. .++...+.+|+|.
T Consensus 288 tiIt~~~~~~dg-----~~T----------~-~saT~~v~~~~F~a~~it~~Ntag~~~~QAvAlrv~~D~~~f~~C~~~ 351 (538)
T PLN03043 288 TIITGNHSVVDG-----WTT----------F-NSSTFAVSGERFVAVDVTFRNTAGPEKHQAVALRNNADLSTFYRCSFE 351 (538)
T ss_pred eEEEeCCccCCC-----Ccc----------c-cceEEEEECCCEEEEeeEEEECCCCCCCceEEEEEcCCcEEEEeeEEe
Confidence 2222210 0111 111 1 233455567899999999999743 234333 5778999999999
Q ss_pred CCCCCCCCCeEEeecceeEEEEeeEEecCCceEEecCCceeEEEEeeEEcCC------ce-EEEcccccCCCCCcEEEEE
Q 047315 211 APANSPNTDGIHIERSSSVHVSRSHIGTGDDCISVGQGNSEVTIASITCGPG------HG-ISVGSLGRYPNEGDVRGLV 283 (417)
Q Consensus 211 ~~~~~~~~DGi~~~~s~nv~I~n~~i~~gdD~i~i~s~s~nv~i~n~~~~~~------~g-i~igs~~~~~~~~~v~ni~ 283 (417)
+.. |-+.... ..-..++|.|.+.=|-|- |.-.+.++||++..- .+ +..- ++ .....-..+.
T Consensus 352 gyQ-----DTLy~~~-~rq~y~~c~I~GtVDFIF---G~a~avfq~c~i~~r~~~~~~~~~iTA~--~r-~~~~~~tG~~ 419 (538)
T PLN03043 352 GYQ-----DTLYVHS-LRQFYRECDIYGTVDFIF---GNAAAIFQNCNLYARKPMANQKNAFTAQ--GR-TDPNQNTGIS 419 (538)
T ss_pred ccC-----cccccCC-CcEEEEeeEEeeccceEe---ecceeeeeccEEEEecCCCCCCceEEec--CC-CCCCCCceEE
Confidence 844 3333333 457899999998766553 345889999988531 12 3221 11 1223345789
Q ss_pred EEeeEEecCceEE----EEEEecCCCCCeeEEeEEEEeEEEecC
Q 047315 284 VRDSTMTGTMNGV----RIKTWANSPGSSAATNMTFENIIMNNV 323 (417)
Q Consensus 284 i~n~~~~~~~~gi----~i~~~~~~~~g~~i~ni~~~ni~~~~~ 323 (417)
|.||++.....-. ..+++-|++..- -+.++|.+..|.+.
T Consensus 420 ~~~c~i~~~~~~~~~~~~~~~yLGRpW~~-ysr~v~~~s~i~~~ 462 (538)
T PLN03043 420 IINCTIEAAPDLAMDPNSTMNFLGRPWKP-YSRTVYMQSYIGDL 462 (538)
T ss_pred EEecEEecCCcccccccccceeccCCCCC-CceEEEEecccCCe
Confidence 9999998754210 122333444333 47788888877764
No 65
>PLN02484 probable pectinesterase/pectinesterase inhibitor
Probab=97.66 E-value=0.0075 Score=62.83 Aligned_cols=209 Identities=19% Similarity=0.176 Sum_probs=120.9
Q ss_pred cHHHHHHHHHHHhhc-CCCeEEEecCCeeeEeeeEEecCccCccceEEeEecEEEeecCcccccCCCCeEEEcCceeeEE
Q 047315 61 DSKAFEAAWKEACET-TGAVTLLVPHGTYLIGPIKFAGPCKNVSNITVQMKGYLIASTNLSEYRFGAGWVEFGGVEGLTL 139 (417)
Q Consensus 61 dt~aiq~Al~~a~~~-~ggg~V~ip~GtY~~~~l~l~~~~~~~s~~~l~~~G~l~~~~~~~~~~~~~~~i~~~~~~nv~I 139 (417)
|-..||+||+++-.. ...-+|+|.+|+|.-..+.++.. | .+++|.++|. +...|
T Consensus 283 ~f~TIq~Ai~a~P~~~~~r~vI~Ik~G~Y~E~~v~i~~~-k--~ni~l~G~g~----------------------~~TiI 337 (587)
T PLN02484 283 TFKTISEAIKKAPEHSSRRTIIYVKAGRYEENNLKVGRK-K--TNLMFIGDGK----------------------GKTVI 337 (587)
T ss_pred CcccHHHHHHhccccCCCcEEEEEeCCEEEEEEEEECCC-C--ceEEEEecCC----------------------CCeEE
Confidence 477899998654322 23468999999998644555311 2 5777777751 11112
Q ss_pred ecCe-EEcCCCcccccCCCCCCCCCCCCCcceEEEEeecceEEEeeEEecCCc----ceEEEe-ceecEEEEeEEEECCC
Q 047315 140 TGGG-TFDGRGAKAWPYNGCPTHFNCKLLPTNVKFVAMKKTIVRRITSVNSKS----FHIALV-ECKNFRGSKIKISAPA 213 (417)
Q Consensus 140 ~G~G-~idg~g~~~~~~~~~~~~~~~~~~~~~i~~~~~~nv~I~~v~i~n~~~----~~i~~~-~~~~v~i~n~~i~~~~ 213 (417)
+|.- ..++.+ + + ...-.....+++..+|++|.|... ..+-+. .++...+.+|+|.+..
T Consensus 338 t~~~~~~~~~~-t-~--------------~saT~~v~~~~F~a~~itf~Ntag~~~~QAvAlrv~~D~~~fy~C~~~G~Q 401 (587)
T PLN02484 338 TGGKSIFDNLT-T-F--------------HTASFAATGAGFIARDMTFENWAGPAKHQAVALRVGADHAVVYRCNIIGYQ 401 (587)
T ss_pred ecCCcccCCCc-c-c--------------ceEEEEEEcCCEEEEeeEEEECCCCCCCceEEEEecCCcEEEEeeeEeccC
Confidence 2200 001100 0 0 123445578889999999998742 233333 5788899999999744
Q ss_pred CCCCCCeEEeecceeEEEEeeEEecCCceEEecCCceeEEEEeeEEcCC------ce-EEEcccccCCCCCcEEEEEEEe
Q 047315 214 NSPNTDGIHIERSSSVHVSRSHIGTGDDCISVGQGNSEVTIASITCGPG------HG-ISVGSLGRYPNEGDVRGLVVRD 286 (417)
Q Consensus 214 ~~~~~DGi~~~~s~nv~I~n~~i~~gdD~i~i~s~s~nv~i~n~~~~~~------~g-i~igs~~~~~~~~~v~ni~i~n 286 (417)
|-+... +..-.+++|.|.+.=|-|- |.....++||++..- .| |.-- ++ .....-..+.|.|
T Consensus 402 -----DTLy~~-~~Rqyy~~C~I~GtVDFIF---G~a~avfq~C~i~~~~~~~~~~~~ITAq--~r-~~~~~~~G~vf~~ 469 (587)
T PLN02484 402 -----DTLYVH-SNRQFFRECDIYGTVDFIF---GNAAVVLQNCSIYARKPMAQQKNTITAQ--NR-KDPNQNTGISIHA 469 (587)
T ss_pred -----cccccC-CCcEEEEecEEEeccceec---ccceeEEeccEEEEecCCCCCceEEEec--CC-CCCCCCcEEEEEe
Confidence 333333 2456889999998655543 345888999988531 12 2221 11 1123345789999
Q ss_pred eEEecCceE----EEEEEecCCCCCeeEEeEEEEeEEEecC
Q 047315 287 STMTGTMNG----VRIKTWANSPGSSAATNMTFENIIMNNV 323 (417)
Q Consensus 287 ~~~~~~~~g----i~i~~~~~~~~g~~i~ni~~~ni~~~~~ 323 (417)
|++.....- -..+++-|++..- -..++|.+..|.+.
T Consensus 470 c~i~~~~~~~~~~~~~~~yLGRPW~~-ysrvV~~~s~i~~~ 509 (587)
T PLN02484 470 CRILAASDLAASKGSFPTYLGRPWKL-YSRTVYMMSYMGDH 509 (587)
T ss_pred eEEecCCccccccCccceeccCCCCC-CceEEEEecccCCe
Confidence 999874421 1122333444333 47788888888764
No 66
>PLN02301 pectinesterase/pectinesterase inhibitor
Probab=97.65 E-value=0.0062 Score=62.80 Aligned_cols=208 Identities=17% Similarity=0.190 Sum_probs=120.0
Q ss_pred cHHHHHHHHHHHhhcC-CCeEEEecCCeeeEeeeEEecCccCccceEEeEecEEEeecCcccccCCCCeEEEcCceeeEE
Q 047315 61 DSKAFEAAWKEACETT-GAVTLLVPHGTYLIGPIKFAGPCKNVSNITVQMKGYLIASTNLSEYRFGAGWVEFGGVEGLTL 139 (417)
Q Consensus 61 dt~aiq~Al~~a~~~~-ggg~V~ip~GtY~~~~l~l~~~~~~~s~~~l~~~G~l~~~~~~~~~~~~~~~i~~~~~~nv~I 139 (417)
|-..||+||+++-... ..-+|+|.+|+|.- .+.++. .| .+++|.++|. +...|
T Consensus 247 ~f~TIq~Ai~a~P~~~~~r~vI~Ik~G~Y~E-~V~i~~-~k--~~i~l~G~g~----------------------~~TiI 300 (548)
T PLN02301 247 KYKTVKEAVASAPDNSKTRYVIYVKKGTYKE-NVEIGK-KK--KNLMLVGDGM----------------------DSTII 300 (548)
T ss_pred CcccHHHHHHhhhhcCCceEEEEEeCceeeE-EEEecC-CC--ceEEEEecCC----------------------CCcEE
Confidence 5778999986543322 23589999999983 344431 02 6777777751 11111
Q ss_pred ecCe-EEcCCCcccccCCCCCCCCCCCCCcceEEEEeecceEEEeeEEecCCc----ceEEEe-ceecEEEEeEEEECCC
Q 047315 140 TGGG-TFDGRGAKAWPYNGCPTHFNCKLLPTNVKFVAMKKTIVRRITSVNSKS----FHIALV-ECKNFRGSKIKISAPA 213 (417)
Q Consensus 140 ~G~G-~idg~g~~~~~~~~~~~~~~~~~~~~~i~~~~~~nv~I~~v~i~n~~~----~~i~~~-~~~~v~i~n~~i~~~~ 213 (417)
+|.. ..+|.+ .+ ...-.....+++..+|++|.|... ..+-+. .++...+.+|+|.+..
T Consensus 301 t~~~~~~dg~~--T~--------------~SaT~~v~~~~F~a~nitf~Ntag~~~~QAVAlrv~~D~~~fy~C~~~G~Q 364 (548)
T PLN02301 301 TGSLNVIDGST--TF--------------RSATVAAVGDGFIAQDIWFQNTAGPEKHQAVALRVSADQAVINRCRIDAYQ 364 (548)
T ss_pred EeCCccCCCCC--ce--------------eeEEEEEECCceEEEeeEEEECCCCCCCceEEEEecCCcEEEEeeeeeecc
Confidence 1100 001110 00 223455567899999999999743 233333 5788999999999743
Q ss_pred CCCCCCeEEeecceeEEEEeeEEecCCceEEecCCceeEEEEeeEEcCC------ce-EEEcccccCCCCCcEEEEEEEe
Q 047315 214 NSPNTDGIHIERSSSVHVSRSHIGTGDDCISVGQGNSEVTIASITCGPG------HG-ISVGSLGRYPNEGDVRGLVVRD 286 (417)
Q Consensus 214 ~~~~~DGi~~~~s~nv~I~n~~i~~gdD~i~i~s~s~nv~i~n~~~~~~------~g-i~igs~~~~~~~~~v~ni~i~n 286 (417)
|-+.... ..-..++|.|.+.=|-|- |.....++||++..- .+ +.. .++ .....-..+.|.|
T Consensus 365 -----DTLy~~~-~Rqyy~~C~I~GtVDFIF---G~a~avfq~c~i~~~~~~~~~~~~iTA--qgr-~~~~~~tG~vf~~ 432 (548)
T PLN02301 365 -----DTLYAHS-LRQFYRDSYITGTVDFIF---GNAAVVFQNCKIVARKPMAGQKNMVTA--QGR-TDPNQNTGISIQK 432 (548)
T ss_pred -----ccceecC-CcEEEEeeEEEeccceec---ccceeEEeccEEEEecCCCCCCceEEe--cCC-CCCCCCCEEEEEe
Confidence 3344333 456899999998766553 345888999988521 12 222 111 1223445789999
Q ss_pred eEEecCceEE----EEEEecCCCCCeeEEeEEEEeEEEecC
Q 047315 287 STMTGTMNGV----RIKTWANSPGSSAATNMTFENIIMNNV 323 (417)
Q Consensus 287 ~~~~~~~~gi----~i~~~~~~~~g~~i~ni~~~ni~~~~~ 323 (417)
|++.....-. ..+++-|++..- -..++|.+..+.+.
T Consensus 433 c~i~~~~~~~~~~~~~~~yLGRPW~~-ysr~V~~~s~l~~~ 472 (548)
T PLN02301 433 CDIIASSDLEPVKGSFKTYLGRPWKE-YSRTVVMQSYIDDH 472 (548)
T ss_pred eEEecCccccccccccceeeecCCCC-CceEEEEecccCCe
Confidence 9998754211 122333433333 47777877777653
No 67
>PF01696 Adeno_E1B_55K: Adenovirus EB1 55K protein / large t-antigen; InterPro: IPR002612 This family consists of adenovirus E1B 55 kDa protein or large t-antigen. E1B 55 kDa binds p53 the tumor suppressor protein converting it from a transcriptional activator which responds to damaged DNA in to an unregulated repressor of genes with a p53 binding site []. This protects the virus against p53 induced host antiviral responses and prevents apoptosis as induced by the adenovirus E1A protein []. The E1B region of adenovirus encodes two proteins E1B 55 kDa, the large t-antigen as found in this family and E1B 19 kDa IPR002924 from INTERPRO, the small t-antigen. Both of these proteins inhibit E1A induced apoptosis.
Probab=97.62 E-value=0.012 Score=57.45 Aligned_cols=134 Identities=14% Similarity=0.082 Sum_probs=80.8
Q ss_pred EEEecCC-eeeEe-eeEEecCccCccceEEeEec-EEEeecCcccccCCCCeEEEcCceeeEEecCeEEcCCCcccccCC
Q 047315 80 TLLVPHG-TYLIG-PIKFAGPCKNVSNITVQMKG-YLIASTNLSEYRFGAGWVEFGGVEGLTLTGGGTFDGRGAKAWPYN 156 (417)
Q Consensus 80 ~V~ip~G-tY~~~-~l~l~~~~~~~s~~~l~~~G-~l~~~~~~~~~~~~~~~i~~~~~~nv~I~G~G~idg~g~~~~~~~ 156 (417)
.|++-|| +|.+. ++.++ +...|.+.| +++....... .+.+.-. +
T Consensus 66 KVaL~Pg~~Y~i~~~V~I~------~~cYIiGnGA~V~v~~~~~~--------------~f~v~~~---~---------- 112 (386)
T PF01696_consen 66 KVALRPGAVYVIRKPVNIR------SCCYIIGNGATVRVNGPDRV--------------AFRVCMQ---S---------- 112 (386)
T ss_pred EEEeCCCCEEEEeeeEEec------ceEEEECCCEEEEEeCCCCc--------------eEEEEcC---C----------
Confidence 6777777 59986 89998 788999997 5444211111 0111110 0
Q ss_pred CCCCCCCCCCCcceEEEEeecceEEEeeEEecCC-cceEEEeceecEEEEeEEEECCCCCCCCCeEEeecceeEEEEeeE
Q 047315 157 GCPTHFNCKLLPTNVKFVAMKKTIVRRITSVNSK-SFHIALVECKNFRGSKIKISAPANSPNTDGIHIERSSSVHVSRSH 235 (417)
Q Consensus 157 ~~~~~~~~~~~~~~i~~~~~~nv~I~~v~i~n~~-~~~i~~~~~~~v~i~n~~i~~~~~~~~~DGi~~~~s~nv~I~n~~ 235 (417)
..| .+.+-.+|++.|+.|...+ ..++-+...+++.+.+|.+.+-. |..+.......|++|.
T Consensus 113 ---------~~P---~V~gM~~VtF~ni~F~~~~~~~g~~f~~~t~~~~hgC~F~gf~------g~cl~~~~~~~VrGC~ 174 (386)
T PF01696_consen 113 ---------MGP---GVVGMEGVTFVNIRFEGRDTFSGVVFHANTNTLFHGCSFFGFH------GTCLESWAGGEVRGCT 174 (386)
T ss_pred ---------CCC---eEeeeeeeEEEEEEEecCCccceeEEEecceEEEEeeEEecCc------ceeEEEcCCcEEeeeE
Confidence 012 1334456777777777666 55777777777778887777622 3344434567777777
Q ss_pred EecCCceEEecCCceeEEEEeeEEcCCc-eE
Q 047315 236 IGTGDDCISVGQGNSEVTIASITCGPGH-GI 265 (417)
Q Consensus 236 i~~gdD~i~i~s~s~nv~i~n~~~~~~~-gi 265 (417)
|....-|+.-. +...+.|++|.|.... |+
T Consensus 175 F~~C~~gi~~~-~~~~lsVk~C~FekC~igi 204 (386)
T PF01696_consen 175 FYGCWKGIVSR-GKSKLSVKKCVFEKCVIGI 204 (386)
T ss_pred EEEEEEEeecC-CcceEEeeheeeeheEEEE
Confidence 77655555333 2457777777776654 44
No 68
>PLN02488 probable pectinesterase/pectinesterase inhibitor
Probab=97.60 E-value=0.013 Score=59.46 Aligned_cols=207 Identities=16% Similarity=0.145 Sum_probs=119.5
Q ss_pred ccHHHHHHHHHHHhhc-CCCeEEEecCCeeeEeeeEEecCccCccceEEeEec---EEEeecCcccccCCCCeEEEcCce
Q 047315 60 DDSKAFEAAWKEACET-TGAVTLLVPHGTYLIGPIKFAGPCKNVSNITVQMKG---YLIASTNLSEYRFGAGWVEFGGVE 135 (417)
Q Consensus 60 Ddt~aiq~Al~~a~~~-~ggg~V~ip~GtY~~~~l~l~~~~~~~s~~~l~~~G---~l~~~~~~~~~~~~~~~i~~~~~~ 135 (417)
-|-..||+||+++-.. ...-+|+|.+|+|.- .+.++. .| .+++|.++| ++.-. . .
T Consensus 207 G~f~TIq~AI~a~P~~~~~r~vI~Ik~GvY~E-~V~I~~-~k--~nItliGdg~~~TiIt~---------------n--~ 265 (509)
T PLN02488 207 GKYNTVNAAIAAAPEHSRKRFVIYIKTGVYDE-IVRIGS-TK--PNLTLIGDGQDSTIITG---------------N--L 265 (509)
T ss_pred CCccCHHHHHHhchhcCCCcEEEEEeCCeeEE-EEEecC-CC--ccEEEEecCCCceEEEE---------------c--c
Confidence 3577899998654322 234589999999983 344431 12 678887776 21110 0 0
Q ss_pred eeEEecCeEEcCCCcccccCCCCCCCCCCCCCcceEEEEeecceEEEeeEEecCCc----ceEEEe-ceecEEEEeEEEE
Q 047315 136 GLTLTGGGTFDGRGAKAWPYNGCPTHFNCKLLPTNVKFVAMKKTIVRRITSVNSKS----FHIALV-ECKNFRGSKIKIS 210 (417)
Q Consensus 136 nv~I~G~G~idg~g~~~~~~~~~~~~~~~~~~~~~i~~~~~~nv~I~~v~i~n~~~----~~i~~~-~~~~v~i~n~~i~ 210 (417)
++ ..|.+++ ..+-.....+++..+|++|.|... ..+-+. .++...+.+|.|.
T Consensus 266 ~~-~~g~~T~----------------------~SATv~v~g~gF~A~nitf~Ntag~~~~QAVALrv~~Dra~Fy~C~f~ 322 (509)
T PLN02488 266 SA-SNGKRTF----------------------YTATVASNGDGFIGIDMCFRNTAGPAKGPAVALRVSGDMSVIYRCRIE 322 (509)
T ss_pred cc-cCCCCce----------------------eeEEEEEEcCCeEEEeeEEEECCCCCCCceEEEEecCCcEEEEcceee
Confidence 00 0011110 123444567788999999998742 233333 5788899999999
Q ss_pred CCCCCCCCCeEEeecceeEEEEeeEEecCCceEEecCCceeEEEEeeEEcCC------ceEEEcccccCCCCCcEEEEEE
Q 047315 211 APANSPNTDGIHIERSSSVHVSRSHIGTGDDCISVGQGNSEVTIASITCGPG------HGISVGSLGRYPNEGDVRGLVV 284 (417)
Q Consensus 211 ~~~~~~~~DGi~~~~s~nv~I~n~~i~~gdD~i~i~s~s~nv~i~n~~~~~~------~gi~igs~~~~~~~~~v~ni~i 284 (417)
+.. |-+... +.+-.+++|.|.+.=|-|- |...+.++||.+..- .+ .|-..++ .....-..+.|
T Consensus 323 GyQ-----DTLy~~-~~RqyyrdC~I~GtVDFIF---G~a~avFq~C~I~sr~~~~~~~~-~ITAq~R-~~~~~~tGfvf 391 (509)
T PLN02488 323 GYQ-----DALYPH-RDRQFYRECFITGTVDFIC---GNAAAVFQFCQIVARQPMMGQSN-VITAQSR-ESKDDNSGFSI 391 (509)
T ss_pred ccC-----cceeeC-CCCEEEEeeEEeeccceEe---cceEEEEEccEEEEecCCCCCCE-EEEeCCC-CCCCCCcEEEE
Confidence 743 334333 3567889999998766553 356888999988521 12 2311111 11233457899
Q ss_pred EeeEEecCceEE----EEEEecCCCCCeeEEeEEEEeEEEec
Q 047315 285 RDSTMTGTMNGV----RIKTWANSPGSSAATNMTFENIIMNN 322 (417)
Q Consensus 285 ~n~~~~~~~~gi----~i~~~~~~~~g~~i~ni~~~ni~~~~ 322 (417)
.||++....... ..+++-|+|..- -+.+.|-+..+.+
T Consensus 392 ~~C~it~~~~~~~~~~~~~~YLGRPW~~-ySrvVf~~s~i~~ 432 (509)
T PLN02488 392 QKCNITASSDLDPVKATVKTYLGRPWRK-YSTVAVLQSFIGD 432 (509)
T ss_pred EeeEEecCCcccccccccceeecCCCCC-CccEEEEeccCCC
Confidence 999998754211 123344443333 3677777777765
No 69
>PLN02197 pectinesterase
Probab=97.58 E-value=0.0087 Score=62.17 Aligned_cols=211 Identities=12% Similarity=0.093 Sum_probs=120.7
Q ss_pred cHHHHHHHHHHHhhc-CCCeEEEecCCeeeEeeeEEecCccCccceEEeEecEEEeecCcccccCCCCeEEEcCceeeEE
Q 047315 61 DSKAFEAAWKEACET-TGAVTLLVPHGTYLIGPIKFAGPCKNVSNITVQMKGYLIASTNLSEYRFGAGWVEFGGVEGLTL 139 (417)
Q Consensus 61 dt~aiq~Al~~a~~~-~ggg~V~ip~GtY~~~~l~l~~~~~~~s~~~l~~~G~l~~~~~~~~~~~~~~~i~~~~~~nv~I 139 (417)
|-..||+||+++-.. .+.-+|+|.+|+|.- .+.++. .| .+++|+++|. +...|
T Consensus 286 ~f~TIq~Ai~a~P~~~~~r~vI~Ik~GvY~E-~V~I~~-~k--~ni~l~G~g~----------------------~~TiI 339 (588)
T PLN02197 286 QFKTISQAVMACPDKNPGRCIIHIKAGIYNE-QVTIPK-KK--NNIFMFGDGA----------------------RKTVI 339 (588)
T ss_pred CcCCHHHHHHhccccCCceEEEEEeCceEEE-EEEccC-CC--ceEEEEEcCC----------------------CCeEE
Confidence 567899998654322 233579999999983 333431 12 5777777751 11111
Q ss_pred ecCe---EEcCCCcccccCCCCCCCCCCCCCcceEEEEeecceEEEeeEEecCCc----ceEEEe-ceecEEEEeEEEEC
Q 047315 140 TGGG---TFDGRGAKAWPYNGCPTHFNCKLLPTNVKFVAMKKTIVRRITSVNSKS----FHIALV-ECKNFRGSKIKISA 211 (417)
Q Consensus 140 ~G~G---~idg~g~~~~~~~~~~~~~~~~~~~~~i~~~~~~nv~I~~v~i~n~~~----~~i~~~-~~~~v~i~n~~i~~ 211 (417)
++.- ..+|.. + . ...-.....+++..+|++|.|... ..+-+. .++...+.+|.|.+
T Consensus 340 t~~~~~~~~~g~~-T--------------~-~SaT~~v~~~~F~a~nitf~Ntag~~~~QAVAlrv~~D~~~fy~C~f~G 403 (588)
T PLN02197 340 SYNRSVKLSPGTT-T--------------S-LSGTVQVESEGFMAKWIGFKNTAGPMGHQAVAIRVNGDRAVIFNCRFDG 403 (588)
T ss_pred EeccccccCCCCc-c--------------c-ceeEEEEECCcEEEEEeEEEeCCCCCCCceEEEEecCCcEEEEEeEEEe
Confidence 1100 001100 0 0 123444568899999999999743 233333 67889999999997
Q ss_pred CCCCCCCCeEEeecceeEEEEeeEEecCCceEEecCCceeEEEEeeEEcCC---ce--EEEcccccCCCCCcEEEEEEEe
Q 047315 212 PANSPNTDGIHIERSSSVHVSRSHIGTGDDCISVGQGNSEVTIASITCGPG---HG--ISVGSLGRYPNEGDVRGLVVRD 286 (417)
Q Consensus 212 ~~~~~~~DGi~~~~s~nv~I~n~~i~~gdD~i~i~s~s~nv~i~n~~~~~~---~g--i~igs~~~~~~~~~v~ni~i~n 286 (417)
. .|-+.... ..-.+++|.|.+.=|-|- |.....++||++..- .| -.|-..++......-..+.|.|
T Consensus 404 y-----QDTLy~~~-~Rqyy~~C~I~GtVDFIF---G~a~avfq~C~i~~r~~~~~~~~~iTAqgr~~~~~~~tG~vf~~ 474 (588)
T PLN02197 404 Y-----QDTLYVNN-GRQFYRNIVVSGTVDFIF---GKSATVIQNSLIVVRKGSKGQYNTVTADGNEKGLAMKIGIVLQN 474 (588)
T ss_pred c-----CcceEecC-CCEEEEeeEEEecccccc---cceeeeeecCEEEEecCCCCCceeEECCCCCCCCCCCcEEEEEc
Confidence 4 34444443 456899999998655542 344688999987521 12 1221222110013345789999
Q ss_pred eEEecCceE----EEEEEecCCCCCeeEEeEEEEeEEEecC
Q 047315 287 STMTGTMNG----VRIKTWANSPGSSAATNMTFENIIMNNV 323 (417)
Q Consensus 287 ~~~~~~~~g----i~i~~~~~~~~g~~i~ni~~~ni~~~~~ 323 (417)
|++.....- ...+++-|++..- -..+.|-+..|.+.
T Consensus 475 C~it~~~~~~~~~~~~~~yLGRPW~~-ysrvV~~~s~~~~~ 514 (588)
T PLN02197 475 CRIVPDKKLTAERLTVASYLGRPWKK-FSTTVIISTEIGDL 514 (588)
T ss_pred cEEecCCcccccccccccccCCCCCC-CceEEEEecccCCe
Confidence 999875421 1223444444333 47788888888653
No 70
>PLN02313 Pectinesterase/pectinesterase inhibitor
Probab=97.50 E-value=0.011 Score=61.62 Aligned_cols=210 Identities=19% Similarity=0.222 Sum_probs=119.0
Q ss_pred cHHHHHHHHHHHhhc-CCCeEEEecCCeeeEeeeEEecCccCccceEEeEecEEEeecCcccccCCCCeEEEcCceeeEE
Q 047315 61 DSKAFEAAWKEACET-TGAVTLLVPHGTYLIGPIKFAGPCKNVSNITVQMKGYLIASTNLSEYRFGAGWVEFGGVEGLTL 139 (417)
Q Consensus 61 dt~aiq~Al~~a~~~-~ggg~V~ip~GtY~~~~l~l~~~~~~~s~~~l~~~G~l~~~~~~~~~~~~~~~i~~~~~~nv~I 139 (417)
|-..||+||+++-.. .+.-+|+|.+|+|.- .+.++.. | .+++|.++|. +...|
T Consensus 286 ~f~TI~~Av~a~p~~~~~r~vI~ik~GvY~E-~V~i~~~-k--~ni~l~Gdg~----------------------~~TiI 339 (587)
T PLN02313 286 DFTTVAAAVAAAPEKSNKRFVIHIKAGVYRE-NVEVTKK-K--KNIMFLGDGR----------------------GKTII 339 (587)
T ss_pred CCccHHHHHHhccccCCceEEEEEeCceeEE-EEEeCCC-C--CeEEEEecCC----------------------CccEE
Confidence 577899998654322 234599999999983 3333210 2 5677777651 11122
Q ss_pred ecC-eEEcCCCcccccCCCCCCCCCCCCCcceEEEEeecceEEEeeEEecCCcc----eEEEe-ceecEEEEeEEEECCC
Q 047315 140 TGG-GTFDGRGAKAWPYNGCPTHFNCKLLPTNVKFVAMKKTIVRRITSVNSKSF----HIALV-ECKNFRGSKIKISAPA 213 (417)
Q Consensus 140 ~G~-G~idg~g~~~~~~~~~~~~~~~~~~~~~i~~~~~~nv~I~~v~i~n~~~~----~i~~~-~~~~v~i~n~~i~~~~ 213 (417)
+|. ...+|.. .+ ...-.....+++..+|++|.|.... .+-+. .++...+.+|.|.+..
T Consensus 340 t~~~~~~~g~~--t~--------------~sat~~v~~~~F~a~~itf~Ntag~~~~QAvAlrv~~D~~~fy~C~~~g~Q 403 (587)
T PLN02313 340 TGSRNVVDGST--TF--------------HSATVAAVGERFLARDITFQNTAGPSKHQAVALRVGSDFSAFYQCDMFAYQ 403 (587)
T ss_pred EeCCcccCCCC--ce--------------eeEEEEEECCCeEEEeeEEEeCCCCCCCceEEEEecCCcEEEEeeeEeccc
Confidence 221 0111111 01 1234445678999999999997432 33333 6788899999999743
Q ss_pred CCCCCCeEEeecceeEEEEeeEEecCCceEEecCCceeEEEEeeEEcCC---ce--EEEcccccCCCCCcEEEEEEEeeE
Q 047315 214 NSPNTDGIHIERSSSVHVSRSHIGTGDDCISVGQGNSEVTIASITCGPG---HG--ISVGSLGRYPNEGDVRGLVVRDST 288 (417)
Q Consensus 214 ~~~~~DGi~~~~s~nv~I~n~~i~~gdD~i~i~s~s~nv~i~n~~~~~~---~g--i~igs~~~~~~~~~v~ni~i~n~~ 288 (417)
|-+.... ..-..++|.|.+.=|-|- |...+.++||.+..- .| -.|-..++ .....-..+.|.||+
T Consensus 404 -----DTLy~~~-~rq~y~~c~I~GtvDFIF---G~a~avfq~c~i~~r~~~~~~~~~iTAqgr-~~~~~~tG~v~~~c~ 473 (587)
T PLN02313 404 -----DTLYVHS-NRQFFVKCHITGTVDFIF---GNAAAVLQDCDINARRPNSGQKNMVTAQGR-SDPNQNTGIVIQNCR 473 (587)
T ss_pred -----chhccCC-CcEEEEeeEEeeccceec---cceeEEEEccEEEEecCCCCCcceEEecCC-CCCCCCceEEEEecE
Confidence 3333333 456889999998766553 345888999988521 11 12211111 122334578999999
Q ss_pred EecCceEE----EEEEecCCCCCeeEEeEEEEeEEEecC
Q 047315 289 MTGTMNGV----RIKTWANSPGSSAATNMTFENIIMNNV 323 (417)
Q Consensus 289 ~~~~~~gi----~i~~~~~~~~g~~i~ni~~~ni~~~~~ 323 (417)
+.....-. ..+++-|+|..- -+-++|-+..+.+.
T Consensus 474 i~~~~~~~~~~~~~~~yLGRPW~~-ysr~v~~~s~i~~~ 511 (587)
T PLN02313 474 IGGTSDLLAVKGTFPTYLGRPWKE-YSRTVIMQSDISDV 511 (587)
T ss_pred EecCCccccccccchhhccCCCCC-CccEEEEecccCCe
Confidence 98754211 122333443332 36677777777653
No 71
>PLN02990 Probable pectinesterase/pectinesterase inhibitor
Probab=97.48 E-value=0.018 Score=59.91 Aligned_cols=211 Identities=15% Similarity=0.171 Sum_probs=119.7
Q ss_pred cHHHHHHHHHHHhhc-CCCeEEEecCCeeeEeeeEEecCccCccceEEeEecEEEeecCcccccCCCCeEEEcCceeeEE
Q 047315 61 DSKAFEAAWKEACET-TGAVTLLVPHGTYLIGPIKFAGPCKNVSNITVQMKGYLIASTNLSEYRFGAGWVEFGGVEGLTL 139 (417)
Q Consensus 61 dt~aiq~Al~~a~~~-~ggg~V~ip~GtY~~~~l~l~~~~~~~s~~~l~~~G~l~~~~~~~~~~~~~~~i~~~~~~nv~I 139 (417)
|-..||+||+++-.. ...-+|+|.+|+|.- .+.++. .| .+++|+++|. +...|
T Consensus 270 ~f~TIq~Av~a~p~~~~~r~vI~Ik~GvY~E-~V~i~~-~k--~~i~l~G~g~----------------------~~TiI 323 (572)
T PLN02990 270 QYKTINEALNAVPKANQKPFVIYIKQGVYNE-KVDVTK-KM--THVTFIGDGP----------------------TKTKI 323 (572)
T ss_pred CCcCHHHHHhhCcccCCceEEEEEeCceeEE-EEEecC-CC--CcEEEEecCC----------------------CceEE
Confidence 567899998654221 234589999999983 344431 12 6777777761 11111
Q ss_pred ecCe-EEcCCCcccccCCCCCCCCCCCCCcceEEEEeecceEEEeeEEecCCc----ceEEEe-ceecEEEEeEEEECCC
Q 047315 140 TGGG-TFDGRGAKAWPYNGCPTHFNCKLLPTNVKFVAMKKTIVRRITSVNSKS----FHIALV-ECKNFRGSKIKISAPA 213 (417)
Q Consensus 140 ~G~G-~idg~g~~~~~~~~~~~~~~~~~~~~~i~~~~~~nv~I~~v~i~n~~~----~~i~~~-~~~~v~i~n~~i~~~~ 213 (417)
+|.- .-++. |. .. ...-.....+++..+|++|.|... ..+-+. .++...+.+|+|.+..
T Consensus 324 t~~~~~~~g~----~~----------T~-~saT~~v~~~~F~a~nitf~Ntag~~~~QAVAlrv~~D~~~f~~c~~~G~Q 388 (572)
T PLN02990 324 TGSLNFYIGK----VK----------TY-LTATVAINGDHFTAKNIGFENTAGPEGHQAVALRVSADYAVFYNCQIDGYQ 388 (572)
T ss_pred EeccccCCCC----cc----------ce-eeeEEEEEcCCEEEEeeEEEeCCCCCCCceEEEEEcCCcEEEEeeeEeccc
Confidence 1100 00000 00 00 123344567899999999999753 233333 5788999999999743
Q ss_pred CCCCCCeEEeecceeEEEEeeEEecCCceEEecCCceeEEEEeeEEcCC---ce--EEEcccccCCCCCcEEEEEEEeeE
Q 047315 214 NSPNTDGIHIERSSSVHVSRSHIGTGDDCISVGQGNSEVTIASITCGPG---HG--ISVGSLGRYPNEGDVRGLVVRDST 288 (417)
Q Consensus 214 ~~~~~DGi~~~~s~nv~I~n~~i~~gdD~i~i~s~s~nv~i~n~~~~~~---~g--i~igs~~~~~~~~~v~ni~i~n~~ 288 (417)
|-+.... ..-.+++|.|.+.=|-|- |.....++||++..- .| -.|-..++. ....-..+.|.||+
T Consensus 389 -----DTLy~~~-~Rqyy~~C~I~GtVDFIF---G~a~avf~~C~i~~~~~~~~~~~~iTAq~r~-~~~~~~G~vf~~C~ 458 (572)
T PLN02990 389 -----DTLYVHS-HRQFFRDCTVSGTVDFIF---GDAKVVLQNCNIVVRKPMKGQSCMITAQGRS-DVRESTGLVLQNCH 458 (572)
T ss_pred -----chhccCC-CcEEEEeeEEecccceEc---cCceEEEEccEEEEecCCCCCceEEEeCCCC-CCCCCceEEEEeeE
Confidence 3333333 456889999998766553 345788999988521 11 222111111 12334578999999
Q ss_pred EecCceEE----EEEEecCCCCCeeEEeEEEEeEEEecC
Q 047315 289 MTGTMNGV----RIKTWANSPGSSAATNMTFENIIMNNV 323 (417)
Q Consensus 289 ~~~~~~gi----~i~~~~~~~~g~~i~ni~~~ni~~~~~ 323 (417)
+....... ..+.+-|++..- -+.+.|.+..|.+.
T Consensus 459 it~~~~~~~~~~~~~~yLGRpW~~-ysrvV~~~s~i~~~ 496 (572)
T PLN02990 459 ITGEPAYIPVKSINKAYLGRPWKE-FSRTIIMGTTIDDV 496 (572)
T ss_pred EecCccccccccccceEeecCCCC-CceEEEEecccCCe
Confidence 98754211 112333333332 37788888877754
No 72
>PF00544 Pec_lyase_C: Pectate lyase; InterPro: IPR002022 Pectate lyase 4.2.2.2 from EC is an enzyme involved in the maceration and soft rotting of plant tissue. Pectate lyase is responsible for the eliminative cleavage of pectate, yielding oligosaccharides with 4-deoxy-alpha-D-mann-4-enuronosyl groups at their non-reducing ends. The protein is maximally expressed late in pollen development. It has been suggested that the pollen expression of pectate lyase genes might relate to a requirement for pectin degradation during pollen tube growth []. The structure and the folding kinetics of one member of this family, pectate lyase C (pelC)1 from Erwinia chrysanthemi has been investigated in some detail [,]. PelC contains a parallel beta-helix folding motif. The majority of the regular secondary structure is composed of parallel beta-sheets (about 30%). The individual strands of the sheets are connected by unordered loops of varying length. The backbone is then formed by a large helix composed of beta-sheets. There are two disulphide bonds in pelC and 12 proline residues. One of these prolines, Pro220, is involved in a cis peptide bond. he folding mechanism of pelC involves two slow phases that have been attributed to proline isomerization. Some of the proteins in this family are allergens. Allergies are hypersensitivity reactions of the immune system to specific substances called allergens (such as pollen, stings, drugs, or food) that, in most people, result in no symptoms. A nomenclature system has been established for antigens (allergens) that cause IgE-mediated atopic allergies in humans [WHO/IUIS Allergen Nomenclature Subcommittee King T.P., Hoffmann D., Loewenstein H., Marsh D.G., Platts-Mills T.A.E., Thomas W. Bull. World Health Organ. 72:797-806(1994)]. This nomenclature system is defined by a designation that is composed of the first three letters of the genus; a space; the first letter of the species name; a space and an arabic number. In the event that two species names have identical designations, they are discriminated from one another by adding one or more letters (as necessary) to each species designation. The allergens in this family include allergens with the following designations: Amb a 1, Amb a 2, Amb a 3, Cha o 1, Cup a 1, Cry j 1, Jun a 1. Two of the major allergens in the pollen of short ragweed (Ambrosia artemisiifolia) are Amb aI and Amb aII. The primary structure of Amb aII has been deduced and has been shown to share ~65% sequence identity with the Amb alpha I multigene family of allergens []. Members of the Amb aI/aII family include Nicotiana tabacum (Common tobacco) pectate lyase, which is similar to the deduced amino acid sequences of two pollen-specific pectate lyase genes identified in Solanum lycopersicum (Tomato) (Lycopersicon esculentum) []; Cry jI, a major allergenic glycoprotein of Cryptomeria japonica (Japanese cedar) - the most common pollen allergen in Japan []; and P56 and P59, which share sequence similarity with pectate lyases of plant pathogenic bacteria [].; PDB: 1O8M_A 1O8K_A 1O8E_A 1O8H_A 2PEC_A 1PLU_A 1O8I_A 1O8J_A 1O8D_A 1O8F_A ....
Probab=97.48 E-value=0.0022 Score=57.83 Aligned_cols=120 Identities=16% Similarity=0.147 Sum_probs=74.5
Q ss_pred EEE-EeecceEEEeeEEecC---------------CcceEEEeceecEEEEeEEEECCCC---CCCCCe-EEee-cceeE
Q 047315 171 VKF-VAMKKTIVRRITSVNS---------------KSFHIALVECKNFRGSKIKISAPAN---SPNTDG-IHIE-RSSSV 229 (417)
Q Consensus 171 i~~-~~~~nv~I~~v~i~n~---------------~~~~i~~~~~~~v~i~n~~i~~~~~---~~~~DG-i~~~-~s~nv 229 (417)
+.+ .+++||.|++++|+.. ...++.+..+++|.|++|++..... ....|| +++. .+.+|
T Consensus 39 ~~i~~~~~NVIirNl~~~~~~~~~~~~~~~~~~~~~~Dai~i~~~~nVWIDH~sfs~~~~~~~~~~~Dg~idi~~~s~~v 118 (200)
T PF00544_consen 39 LRIIKGASNVIIRNLRFRNVPVDPGPDWSGDGDSSDGDAISIDNSSNVWIDHCSFSWGNFECNSDSSDGLIDIKKGSDNV 118 (200)
T ss_dssp EEEEESCEEEEEES-EEECEEEECSTEEETTEEECS--SEEEESTEEEEEES-EEEETTS-GGGSSSSSSEEEESSTEEE
T ss_pred EEEecCCCeEEEECCEEEeccccCCcccCCCccccCCCeEEEEecccEEEeccEEeccccccccccCCceEEEEeCCceE
Confidence 344 4899999999999982 4458999999999999999998521 111455 6765 58999
Q ss_pred EEEeeEEecCCceEEecCC-------ceeEEEEeeEEcCCceEEEcccccCCCCCcEEEEEEEeeEEec-CceEEEE
Q 047315 230 HVSRSHIGTGDDCISVGQG-------NSEVTIASITCGPGHGISVGSLGRYPNEGDVRGLVVRDSTMTG-TMNGVRI 298 (417)
Q Consensus 230 ~I~n~~i~~gdD~i~i~s~-------s~nv~i~n~~~~~~~gi~igs~~~~~~~~~v~ni~i~n~~~~~-~~~gi~i 298 (417)
+|++|.|.+.+.+.-+++. ..+|++.+|.|.+..+ +. .....-.+.+-|+.+.+ ..+++..
T Consensus 119 TiS~n~f~~~~k~~l~G~~d~~~~~~~~~vT~hhN~f~~~~~-------R~-P~~r~G~~Hv~NN~~~~~~~y~i~~ 187 (200)
T PF00544_consen 119 TISNNIFDNHNKTMLIGSSDSNSTDRGLRVTFHHNYFANTNS-------RN-PRVRFGYVHVYNNYYYNWSGYAIGA 187 (200)
T ss_dssp EEES-EEEEEEETCEESSCTTCGGGTTEEEEEES-EEEEEEE--------T-TEECSCEEEEES-EEEEECSESEEE
T ss_pred EEEchhccccccccccCCCCCccccCCceEEEEeEEECchhh-------CC-CcccccEEEEEEeeeECCCCEEEEc
Confidence 9999999875443333331 2699999999864321 00 00011146777776644 4556665
No 73
>PLN02314 pectinesterase
Probab=97.47 E-value=0.0097 Score=62.10 Aligned_cols=208 Identities=16% Similarity=0.184 Sum_probs=120.0
Q ss_pred cHHHHHHHHHHHhhc-CCCeEEEecCCeeeEeeeEEecCccCccceEEeEecEEEeecCcccccCCCCeEEEcCceeeEE
Q 047315 61 DSKAFEAAWKEACET-TGAVTLLVPHGTYLIGPIKFAGPCKNVSNITVQMKGYLIASTNLSEYRFGAGWVEFGGVEGLTL 139 (417)
Q Consensus 61 dt~aiq~Al~~a~~~-~ggg~V~ip~GtY~~~~l~l~~~~~~~s~~~l~~~G~l~~~~~~~~~~~~~~~i~~~~~~nv~I 139 (417)
|-..||+||+++-.. .+.-+|+|.+|+|.- .+.++.. | .+++|+++|. +...|
T Consensus 289 ~f~TI~~Av~a~p~~~~~r~vI~ik~G~Y~E-~V~i~~~-k--~~i~l~G~g~----------------------~~tiI 342 (586)
T PLN02314 289 DVKTINEAVASIPKKSKSRFVIYVKEGTYVE-NVLLDKS-K--WNVMIYGDGK----------------------DKTII 342 (586)
T ss_pred CccCHHHHHhhccccCCceEEEEEcCceEEE-EEEecCC-C--ceEEEEecCC----------------------CCcEE
Confidence 567799998654222 234589999999983 3334310 2 5677777751 11111
Q ss_pred ecCe-EEcCCCcccccCCCCCCCCCCCCCcceEEEEeecceEEEeeEEecCCc----ceEEE-eceecEEEEeEEEECCC
Q 047315 140 TGGG-TFDGRGAKAWPYNGCPTHFNCKLLPTNVKFVAMKKTIVRRITSVNSKS----FHIAL-VECKNFRGSKIKISAPA 213 (417)
Q Consensus 140 ~G~G-~idg~g~~~~~~~~~~~~~~~~~~~~~i~~~~~~nv~I~~v~i~n~~~----~~i~~-~~~~~v~i~n~~i~~~~ 213 (417)
+|.. ..+|.. ++ ...-.....+++..+|++|.|... ..+-+ ..++...+.+|+|.+..
T Consensus 343 t~~~~~~~g~~-t~---------------~saT~~v~~~~F~a~~itf~Ntag~~~~QAvAlrv~~D~~~f~~c~~~G~Q 406 (586)
T PLN02314 343 SGSLNFVDGTP-TF---------------STATFAAAGKGFIAKDMGFINTAGAAKHQAVAFRSGSDMSVFYQCSFDAFQ 406 (586)
T ss_pred EecCCcCCCCC-cc---------------ceEEEEEEcCCeEEEeeEEEECCCCCCCceEEEEecCCcEEEEeeEEEecc
Confidence 1100 011111 11 123444578899999999998742 23333 36778889999999743
Q ss_pred CCCCCCeEEeecceeEEEEeeEEecCCceEEecCCceeEEEEeeEEcCC------ceEEEcccccCCCCCcEEEEEEEee
Q 047315 214 NSPNTDGIHIERSSSVHVSRSHIGTGDDCISVGQGNSEVTIASITCGPG------HGISVGSLGRYPNEGDVRGLVVRDS 287 (417)
Q Consensus 214 ~~~~~DGi~~~~s~nv~I~n~~i~~gdD~i~i~s~s~nv~i~n~~~~~~------~gi~igs~~~~~~~~~v~ni~i~n~ 287 (417)
|-+.... ..-..++|.|.+.=|-|- |...+.++||.+..- .+ .|-..++ .....-..+.|.||
T Consensus 407 -----DTLy~~~-~rq~y~~C~I~GtvDFIF---G~a~avf~~c~i~~~~~~~~~~~-~iTA~~r-~~~~~~~G~vf~~c 475 (586)
T PLN02314 407 -----DTLYAHS-NRQFYRDCDITGTIDFIF---GNAAVVFQNCNIQPRQPLPNQFN-TITAQGK-KDPNQNTGISIQRC 475 (586)
T ss_pred -----chheeCC-CCEEEEeeEEEeccceec---cCceeeeeccEEEEecCCCCCCc-eEecCCC-CCCCCCCEEEEEee
Confidence 3343333 456889999998655553 345888999988531 12 2211111 12234457899999
Q ss_pred EEecCceEEEEEEecCCCCCeeEEeEEEEeEEEecC
Q 047315 288 TMTGTMNGVRIKTWANSPGSSAATNMTFENIIMNNV 323 (417)
Q Consensus 288 ~~~~~~~gi~i~~~~~~~~g~~i~ni~~~ni~~~~~ 323 (417)
++..... +..+++-|++..- -..++|.+..+.+.
T Consensus 476 ~i~~~~~-~~~~~yLGRpW~~-ysr~v~~~s~i~~~ 509 (586)
T PLN02314 476 TISAFGN-LTAPTYLGRPWKD-FSTTVIMQSYIGSF 509 (586)
T ss_pred EEecCCc-ccccccccCCCCC-CceEEEEecccCCc
Confidence 9987542 2233344444332 36778888877764
No 74
>COG4677 PemB Pectin methylesterase [Carbohydrate transport and metabolism]
Probab=97.12 E-value=0.018 Score=54.29 Aligned_cols=196 Identities=12% Similarity=0.060 Sum_probs=96.5
Q ss_pred ccHHHHHHHHHHHhhcCC--CeEEEecCCeeeEeeeEEecCccCccceEEeEec------EEEeecCcccccCCCCeEEE
Q 047315 60 DDSKAFEAAWKEACETTG--AVTLLVPHGTYLIGPIKFAGPCKNVSNITVQMKG------YLIASTNLSEYRFGAGWVEF 131 (417)
Q Consensus 60 Ddt~aiq~Al~~a~~~~g--gg~V~ip~GtY~~~~l~l~~~~~~~s~~~l~~~G------~l~~~~~~~~~~~~~~~i~~ 131 (417)
++-..||+|++++....+ ...+.+.+|.|. ..+.++-. .-.++|++++ +|-.... .-+..+.+..+
T Consensus 92 ~~f~TIQaAvdaA~~~~~~kr~yI~vk~GvY~-e~v~Vp~~---~~~ITLyGed~~~~~tvIg~n~a--agp~np~~~m~ 165 (405)
T COG4677 92 VTFTTIQAAVDAAIIKRTNKRQYIAVKAGVYQ-ETVYVPAA---PGGITLYGEDEKPIDTVIGLNLA--AGPGNPAGYMY 165 (405)
T ss_pred cchHHHHHHHhhhcccCCCceEEEEEccceec-eeEEecCC---CCceeEEecCCCCcceEEEEecC--CCCCCccceee
Confidence 567789999887654433 567889999997 33333310 0237777764 1111111 00111122222
Q ss_pred cCceeeEEecCeEEcCCCcccccCCCCCCCCCCCCCcceEEEEeecceEEEeeEEecCCcce--------E-EEeceecE
Q 047315 132 GGVEGLTLTGGGTFDGRGAKAWPYNGCPTHFNCKLLPTNVKFVAMKKTIVRRITSVNSKSFH--------I-ALVECKNF 202 (417)
Q Consensus 132 ~~~~nv~I~G~G~idg~g~~~~~~~~~~~~~~~~~~~~~i~~~~~~nv~I~~v~i~n~~~~~--------i-~~~~~~~v 202 (417)
..|.--+..=.|++ ...-.+...+++..+++++.|....+ + .....+.+
T Consensus 166 n~c~ss~~~tigt~----------------------~Sat~~v~~ndf~~~nlT~en~~gd~~lagn~~AVaL~~dgDka 223 (405)
T COG4677 166 NSCQSSRSATIGTL----------------------CSATFWVQNNDFQLQNLTIENTLGDGVLAGNHPAVALATDGDKA 223 (405)
T ss_pred cccccchhhhhhhh----------------------hhhhheeecCCcccccceeecccCCccccCCceeEEEEecCCce
Confidence 22110000000111 12234455667777777777764332 2 22366778
Q ss_pred EEEeEEEECCCCCCCCCeEEeecc-----------eeEEEEeeEEecCCceEEecCCceeEEEEeeEEcC------CceE
Q 047315 203 RGSKIKISAPANSPNTDGIHIERS-----------SSVHVSRSHIGTGDDCISVGQGNSEVTIASITCGP------GHGI 265 (417)
Q Consensus 203 ~i~n~~i~~~~~~~~~DGi~~~~s-----------~nv~I~n~~i~~gdD~i~i~s~s~nv~i~n~~~~~------~~gi 265 (417)
.++||++.... |-+-...+ -.-.++||.|+..-|-|. |+.-+.+.+|.+.. ..|.
T Consensus 224 ~frnv~llg~Q-----dTlFv~~~~~~~~~~tn~~~R~yftNsyI~GdvDfIf---GsgtaVFd~c~i~~~d~r~~~~gY 295 (405)
T COG4677 224 IFRNVNLLGNQ-----DTLFVGNSGVQNRLETNRQPRTYFTNSYIEGDVDFIF---GSGTAVFDNCEIQVVDSRTQQEGY 295 (405)
T ss_pred eeeeeeEeecc-----ceEEecCCCCccccccCcchhhheecceecccceEEe---ccceEEeccceEEEeccCCCccee
Confidence 88888888633 22222211 134678888876544442 34456777776631 1242
Q ss_pred EEcccccCCCCCcEEEEEEEeeEEecCce
Q 047315 266 SVGSLGRYPNEGDVRGLVVRDSTMTGTMN 294 (417)
Q Consensus 266 ~igs~~~~~~~~~v~ni~i~n~~~~~~~~ 294 (417)
-+--.. ..+.-....+-|++|.....
T Consensus 296 IfApST---~~~~~YGflalNsrfna~g~ 321 (405)
T COG4677 296 IFAPST---LSGIPYGFLALNSRFNASGD 321 (405)
T ss_pred EeccCC---CCCCceeEEEEeeeeecCCC
Confidence 221111 12333466777777776544
No 75
>PF12218 End_N_terminal: N terminal extension of bacteriophage endosialidase; InterPro: IPR024429 This entry represents the N-terminal extension domain of endosialidases which is approximately 70 amino acids in length. The two N-terminal domains (this domain and the beta propeller) assemble in the compact 'cap' whereas the C-terminal domain forms an extended tail-like structure. The very N-terminal part of the 'cap' region (residues 246 to 312) holds the only alpha-helix of the protein and is presumably the residual part of the deleted N-terminal head-binding domain [].; PDB: 3JU4_A 3GVL_A 3GVK_B 3GVJ_A 1V0E_B 1V0F_E.
Probab=96.91 E-value=0.001 Score=46.35 Aligned_cols=39 Identities=28% Similarity=0.320 Sum_probs=22.2
Q ss_pred ccCCCCcccHHHHHHHHHHHhhcCCCeEEEecCCeeeEeeeE
Q 047315 53 ARADGRTDDSKAFEAAWKEACETTGAVTLLVPHGTYLIGPIK 94 (417)
Q Consensus 53 A~gdg~tDdt~aiq~Al~~a~~~~ggg~V~ip~GtY~~~~l~ 94 (417)
|+|||+||||+||.+||.+. ..|..|---.=||.+++|.
T Consensus 1 A~GDGvtdDt~A~~a~l~a~---~~g~~IDg~GlTykVs~lP 39 (67)
T PF12218_consen 1 AKGDGVTDDTAAITAALEAS---PVGRKIDGAGLTYKVSSLP 39 (67)
T ss_dssp ---CCCCE-HHHHHHHHHHS----TTS-EE-TT-EEEESS--
T ss_pred CCCccccCcHHHHHHHHhcc---CCCeEEecCCceEEEeeCc
Confidence 68999999999999997542 4444554444479988653
No 76
>COG3420 NosD Nitrous oxidase accessory protein [Inorganic ion transport and metabolism]
Probab=96.70 E-value=0.025 Score=53.72 Aligned_cols=65 Identities=12% Similarity=-0.002 Sum_probs=40.3
Q ss_pred ceEEEEeecceEEEeeEEecC-------CcceEEEeceecEEEEeEEEECCCCCCCCCeEEeecceeEEEEeeEEec
Q 047315 169 TNVKFVAMKKTIVRRITSVNS-------KSFHIALVECKNFRGSKIKISAPANSPNTDGIHIERSSSVHVSRSHIGT 238 (417)
Q Consensus 169 ~~i~~~~~~nv~I~~v~i~n~-------~~~~i~~~~~~~v~i~n~~i~~~~~~~~~DGi~~~~s~nv~I~n~~i~~ 238 (417)
..|.++++.++.|++.++..- ...+|++..+.+..|...+|. ...|||....|++-.|++.+++.
T Consensus 121 ~Gi~l~~s~d~~i~~n~i~G~~~~r~~~rGnGI~vyNa~~a~V~~ndis-----y~rDgIy~~~S~~~~~~gnr~~~ 192 (408)
T COG3420 121 FGIYLHGSADVRIEGNTIQGLADLRVAERGNGIYVYNAPGALVVGNDIS-----YGRDGIYSDTSQHNVFKGNRFRD 192 (408)
T ss_pred eEEEEeccCceEEEeeEEeeccccchhhccCceEEEcCCCcEEEcCccc-----cccceEEEcccccceecccchhh
Confidence 356777777777777776542 234677777777666666664 34566666666666666555543
No 77
>PF03211 Pectate_lyase: Pectate lyase; InterPro: IPR004898 Pectate lyase is responsible for the maceration and soft-rotting of plant tissue. It catalyses the eliminative cleavage of pectate to produce oligosaccharides with 4-deoxy-alpha-D-gluc-4-enuronosyl groups at their non-reducing ends. Pectate lyase is an extracellular enzyme and is induced by pectin. It is subject to self-catabolite repression, and has been implicated in plant disease. The structure and the folding kinetics of one member of this family, pectate lyase C (pelC)1 from Erwinia chrysanthemi has been investigated in some detail []. PelC contains a parallel beta-helix folding motif. The majority of the regular secondary structure is composed of parallel beta-sheets (about 30%). The individual strands of the sheets are connected by unordered loops of varying length. The backbone is then formed by a large helix composed of beta-sheets. There are two disulphide bonds in pelC and 12 proline residues. One of these prolines, Pro220, is involved in a cis peptide bond. he folding mechanism of pelC involves two slow phases that have been attributed to proline isomerization.; GO: 0030570 pectate lyase activity, 0005576 extracellular region; PDB: 3T9G_B 3B90_B 3B8Y_A 3B4N_B 1EE6_A.
Probab=96.01 E-value=1.1 Score=40.41 Aligned_cols=82 Identities=10% Similarity=0.053 Sum_probs=48.9
Q ss_pred cceEEEEeecceEEEeeEEecCCcceEEEeceecEEEEeEEEECCCCCCCCCeEEeecce-eEEEEeeEEecCCceEEec
Q 047315 168 PTNVKFVAMKKTIVRRITSVNSKSFHIALVECKNFRGSKIKISAPANSPNTDGIHIERSS-SVHVSRSHIGTGDDCISVG 246 (417)
Q Consensus 168 ~~~i~~~~~~nv~I~~v~i~n~~~~~i~~~~~~~v~i~n~~i~~~~~~~~~DGi~~~~s~-nv~I~n~~i~~gdD~i~i~ 246 (417)
..+|.+. +..+|+|+.|-.....+||..+ +.+|+|+..+. ...|.+.+.+.. .++|.+.-..+.+|-+-=.
T Consensus 54 ~~vF~le--~GatlkNvIiG~~~~dGIHC~G--~Ctl~NVwwed----VcEDA~T~kg~~~~~~I~ggga~~A~DKV~Q~ 125 (215)
T PF03211_consen 54 DPVFILE--DGATLKNVIIGANQADGIHCKG--SCTLENVWWED----VCEDAATFKGDGGTVTIIGGGARNASDKVFQH 125 (215)
T ss_dssp --SEEEE--TTEEEEEEEETSS-TT-EEEES--CEEEEEEEESS-----SSESEEEESSEEEEEEESTEEEEEEEEEEEE
T ss_pred ceEEEec--CCCEEEEEEEcCCCcCceEEcC--CEEEEEEEecc----cceeeeEEcCCCceEEEeCCcccCCCccEEEe
Confidence 3344444 5678888888666667777777 67777777776 346677776655 6677776666665554333
Q ss_pred CCceeEEEEee
Q 047315 247 QGNSEVTIASI 257 (417)
Q Consensus 247 s~s~nv~i~n~ 257 (417)
.+...+.|+|-
T Consensus 126 Ng~Gtv~I~nF 136 (215)
T PF03211_consen 126 NGGGTVTIKNF 136 (215)
T ss_dssp -SSEEEEEEEE
T ss_pred cCceeEEEEeE
Confidence 33445666663
No 78
>PLN02773 pectinesterase
Probab=95.94 E-value=0.81 Score=44.13 Aligned_cols=114 Identities=11% Similarity=0.140 Sum_probs=78.9
Q ss_pred EEeceecEEEEeEEEECCCCC--CCCCeEEeecceeEEEEeeEEecCCceEEecCCceeEEEEeeEEcCCceEEEccccc
Q 047315 195 ALVECKNFRGSKIKISAPANS--PNTDGIHIERSSSVHVSRSHIGTGDDCISVGQGNSEVTIASITCGPGHGISVGSLGR 272 (417)
Q Consensus 195 ~~~~~~~v~i~n~~i~~~~~~--~~~DGi~~~~s~nv~I~n~~i~~gdD~i~i~s~s~nv~i~n~~~~~~~gi~igs~~~ 272 (417)
....++++..+|++|.+.... ...-.+.+. +..+.+.||.|.+..|-+..+. ..-.++||++.+.-.+-+|..
T Consensus 97 v~v~a~~f~a~nlT~~Nt~~~~~gQAvAl~v~-gDr~~f~~c~~~G~QDTL~~~~--gr~yf~~c~IeG~VDFIFG~g-- 171 (317)
T PLN02773 97 VIVEGEDFIAENITFENSAPEGSGQAVAIRVT-ADRCAFYNCRFLGWQDTLYLHY--GKQYLRDCYIEGSVDFIFGNS-- 171 (317)
T ss_pred EEEECCCeEEEeeEEEeCCCCCCCcEEEEEec-CccEEEEccEeecccceeEeCC--CCEEEEeeEEeecccEEeecc--
Confidence 334578999999999985422 122334444 5889999999999999988764 478999999988777877653
Q ss_pred CCCCCcEEEEEEEeeEEecCceEEEEEEecC-CCCCeeEEeEEEEeEEEecCC
Q 047315 273 YPNEGDVRGLVVRDSTMTGTMNGVRIKTWAN-SPGSSAATNMTFENIIMNNVS 324 (417)
Q Consensus 273 ~~~~~~v~ni~i~n~~~~~~~~gi~i~~~~~-~~~g~~i~ni~~~ni~~~~~~ 324 (417)
...|++|++.....|. |..... .+.. -....|.|+++....
T Consensus 172 --------~a~Fe~c~i~s~~~g~-ITA~~r~~~~~--~~GfvF~~c~it~~~ 213 (317)
T PLN02773 172 --------TALLEHCHIHCKSAGF-ITAQSRKSSQE--STGYVFLRCVITGNG 213 (317)
T ss_pred --------EEEEEeeEEEEccCcE-EECCCCCCCCC--CceEEEEccEEecCC
Confidence 4789999997655443 322111 1111 256789999998754
No 79
>PF03211 Pectate_lyase: Pectate lyase; InterPro: IPR004898 Pectate lyase is responsible for the maceration and soft-rotting of plant tissue. It catalyses the eliminative cleavage of pectate to produce oligosaccharides with 4-deoxy-alpha-D-gluc-4-enuronosyl groups at their non-reducing ends. Pectate lyase is an extracellular enzyme and is induced by pectin. It is subject to self-catabolite repression, and has been implicated in plant disease. The structure and the folding kinetics of one member of this family, pectate lyase C (pelC)1 from Erwinia chrysanthemi has been investigated in some detail []. PelC contains a parallel beta-helix folding motif. The majority of the regular secondary structure is composed of parallel beta-sheets (about 30%). The individual strands of the sheets are connected by unordered loops of varying length. The backbone is then formed by a large helix composed of beta-sheets. There are two disulphide bonds in pelC and 12 proline residues. One of these prolines, Pro220, is involved in a cis peptide bond. he folding mechanism of pelC involves two slow phases that have been attributed to proline isomerization.; GO: 0030570 pectate lyase activity, 0005576 extracellular region; PDB: 3T9G_B 3B90_B 3B8Y_A 3B4N_B 1EE6_A.
Probab=94.88 E-value=1.1 Score=40.52 Aligned_cols=129 Identities=16% Similarity=0.210 Sum_probs=76.0
Q ss_pred ecEEEEeEEEECCCCCCCCCeEEeecceeEEEEeeEEec-CCceEEecCCceeEEEEeeEEcCCce--EEEcccccCCCC
Q 047315 200 KNFRGSKIKISAPANSPNTDGIHIERSSSVHVSRSHIGT-GDDCISVGQGNSEVTIASITCGPGHG--ISVGSLGRYPNE 276 (417)
Q Consensus 200 ~~v~i~n~~i~~~~~~~~~DGi~~~~s~nv~I~n~~i~~-gdD~i~i~s~s~nv~i~n~~~~~~~g--i~igs~~~~~~~ 276 (417)
...+++|+.|-. ...||||..+ +-+|+|+.+.. +.|+++++..+..++|.+.-..+... |+.-..
T Consensus 61 ~GatlkNvIiG~----~~~dGIHC~G--~Ctl~NVwwedVcEDA~T~kg~~~~~~I~ggga~~A~DKV~Q~Ng~------ 128 (215)
T PF03211_consen 61 DGATLKNVIIGA----NQADGIHCKG--SCTLENVWWEDVCEDAATFKGDGGTVTIIGGGARNASDKVFQHNGG------ 128 (215)
T ss_dssp TTEEEEEEEETS----S-TT-EEEES--CEEEEEEEESS-SSESEEEESSEEEEEEESTEEEEEEEEEEEE-SS------
T ss_pred CCCEEEEEEEcC----CCcCceEEcC--CEEEEEEEecccceeeeEEcCCCceEEEeCCcccCCCccEEEecCc------
Confidence 356888888854 3679999998 78999999976 79999999865577777776665544 444211
Q ss_pred CcEEEEEEEeeEEecCceEEEEEEecC--CCCCeeEEeEEEEeEEEecCCccEEEEeeeCCCCCCCCCCCCceeEeeEEE
Q 047315 277 GDVRGLVVRDSTMTGTMNGVRIKTWAN--SPGSSAATNMTFENIIMNNVSNPIIIDQAYCPFTSCPTKPPSRVKLSDIYF 354 (417)
Q Consensus 277 ~~v~ni~i~n~~~~~~~~gi~i~~~~~--~~~g~~i~ni~~~ni~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~v~nI~~ 354 (417)
+ .++|+|.+..+. |--..+..+ ...+. -+++.+++........-..|...|.+ ..+|+++.+
T Consensus 129 G---tv~I~nF~a~d~--GKl~RSCGnC~~~~~~-~r~v~v~~~~~~~~~~~~giN~N~gD----------~ati~~~~~ 192 (215)
T PF03211_consen 129 G---TVTIKNFYAEDF--GKLYRSCGNCSNNGGP-RRHVVVNNVVAGPGNSLVGINRNYGD----------TATISNSCI 192 (215)
T ss_dssp E---EEEEEEEEEEEE--EEEEEE-TTETS-----EEEEEEEEEEEEEEEEEEEEEEGGTT----------TEEEEEEEE
T ss_pred e---eEEEEeEEEcCC--CEEEEeCCCCCCCCCc-ceEEEEeeEEecCCcEEEEEECCCCC----------eEEEEEEEe
Confidence 1 366666555433 322333211 11123 36677777665544444455554443 335666666
Q ss_pred Ee
Q 047315 355 KN 356 (417)
Q Consensus 355 ~n 356 (417)
+.
T Consensus 193 ~~ 194 (215)
T PF03211_consen 193 KG 194 (215)
T ss_dssp EE
T ss_pred cC
Confidence 65
No 80
>PF01696 Adeno_E1B_55K: Adenovirus EB1 55K protein / large t-antigen; InterPro: IPR002612 This family consists of adenovirus E1B 55 kDa protein or large t-antigen. E1B 55 kDa binds p53 the tumor suppressor protein converting it from a transcriptional activator which responds to damaged DNA in to an unregulated repressor of genes with a p53 binding site []. This protects the virus against p53 induced host antiviral responses and prevents apoptosis as induced by the adenovirus E1A protein []. The E1B region of adenovirus encodes two proteins E1B 55 kDa, the large t-antigen as found in this family and E1B 19 kDa IPR002924 from INTERPRO, the small t-antigen. Both of these proteins inhibit E1A induced apoptosis.
Probab=94.78 E-value=4.6 Score=39.78 Aligned_cols=87 Identities=10% Similarity=0.056 Sum_probs=64.3
Q ss_pred EeceecEEEEeEEEECCCCCCCCCeEEeecceeEEEEeeEEecCCceEEecCCceeEEEEeeEEcCCc-eEEEcccccCC
Q 047315 196 LVECKNFRGSKIKISAPANSPNTDGIHIERSSSVHVSRSHIGTGDDCISVGQGNSEVTIASITCGPGH-GISVGSLGRYP 274 (417)
Q Consensus 196 ~~~~~~v~i~n~~i~~~~~~~~~DGi~~~~s~nv~I~n~~i~~gdD~i~i~s~s~nv~i~n~~~~~~~-gi~igs~~~~~ 274 (417)
+.+=.+|++.|+++...+ ...|+.+.+..++++.+|.|.+-. +.+++. .....|++|+|.... |+.-
T Consensus 117 V~gM~~VtF~ni~F~~~~---~~~g~~f~~~t~~~~hgC~F~gf~-g~cl~~-~~~~~VrGC~F~~C~~gi~~------- 184 (386)
T PF01696_consen 117 VVGMEGVTFVNIRFEGRD---TFSGVVFHANTNTLFHGCSFFGFH-GTCLES-WAGGEVRGCTFYGCWKGIVS------- 184 (386)
T ss_pred EeeeeeeEEEEEEEecCC---ccceeEEEecceEEEEeeEEecCc-ceeEEE-cCCcEEeeeEEEEEEEEeec-------
Confidence 455578999999999854 355888888899999999999753 333443 247899999997654 4422
Q ss_pred CCCcEEEEEEEeeEEecCceEE
Q 047315 275 NEGDVRGLVVRDSTMTGTMNGV 296 (417)
Q Consensus 275 ~~~~v~ni~i~n~~~~~~~~gi 296 (417)
.....+.+++|.|+...-||
T Consensus 185 --~~~~~lsVk~C~FekC~igi 204 (386)
T PF01696_consen 185 --RGKSKLSVKKCVFEKCVIGI 204 (386)
T ss_pred --CCcceEEeeheeeeheEEEE
Confidence 34456788888888887777
No 81
>PF14592 Chondroitinas_B: Chondroitinase B; PDB: 1OFM_A 1OFL_A 1DBO_A 1DBG_A.
Probab=94.38 E-value=0.94 Score=45.17 Aligned_cols=126 Identities=11% Similarity=0.050 Sum_probs=52.5
Q ss_pred EEEEeecceEEEeeEEecC--Cc-c----eEE--EeceecEEEEeEEEECCCCC-CCCCeEEe----ecceeEEEEeeEE
Q 047315 171 VKFVAMKKTIVRRITSVNS--KS-F----HIA--LVECKNFRGSKIKISAPANS-PNTDGIHI----ERSSSVHVSRSHI 236 (417)
Q Consensus 171 i~~~~~~nv~I~~v~i~n~--~~-~----~i~--~~~~~~v~i~n~~i~~~~~~-~~~DGi~~----~~s~nv~I~n~~i 236 (417)
|.+. .+.++|+++.|++. +. . ... -..+.+.++.+|.|..-... ...+..++ ..+++-+|++|.|
T Consensus 62 l~i~-G~yl~v~GL~F~ng~~~~~~vi~fr~~~~~~~a~~~RlT~~vi~~fn~~~~~~~~~wv~~~~l~G~~NrvDhn~F 140 (425)
T PF14592_consen 62 LRIS-GSYLVVSGLKFKNGYTPTGAVISFRNGGDASYANHCRLTNCVIDDFNNPDREESDNWVTIYSLYGKHNRVDHNYF 140 (425)
T ss_dssp EEE--SSSEEEES-EEEEE---TTT--TTS--SEEE-SSS-EEES-EEES--SS-S-SEEE---TT-----S-EEES-EE
T ss_pred EEEE-eeeEEEeCeEEecCCCCCCceEEeecCCCcceecceEEEeEEeeccCCcccccCceEEEEEEeeccCceEEccEe
Confidence 3433 46788888888764 21 1 111 12467888888888863211 11223333 2468888888888
Q ss_pred ecC---CceEEec--C-----CceeEEEEeeEEc-----CCc---eEEEcccccCCCCCcEEEEEEEeeEEecCce---E
Q 047315 237 GTG---DDCISVG--Q-----GNSEVTIASITCG-----PGH---GISVGSLGRYPNEGDVRGLVVRDSTMTGTMN---G 295 (417)
Q Consensus 237 ~~g---dD~i~i~--s-----~s~nv~i~n~~~~-----~~~---gi~igs~~~~~~~~~v~ni~i~n~~~~~~~~---g 295 (417)
.+. .--+.+. - -...-+|++|+|. ++. .|+||... ....-.+.+|+++.|..+.. =
T Consensus 141 ~gK~~~G~~l~V~~~~~~~~~~~~~h~IdhNyF~~rp~~g~NggEtIRiG~S~---~S~~~s~t~Ve~NlFe~cdGE~EI 217 (425)
T PF14592_consen 141 QGKTNRGPTLAVRVILNGSQSIANYHRIDHNYFGPRPPKGGNGGETIRIGTSH---SSMSDSNTTVENNLFERCDGEVEI 217 (425)
T ss_dssp E---SSS-SEEE--S--SS-------EEES-EEE-E---SSS---SEEE-SST---T-B-----EEES-EEEEE-SSSEE
T ss_pred eccccCCcEEEEEecccCccccccCceEEeccccccCCCCCCCceeEEEeccc---ccccccceeeecchhhhcCCceeE
Confidence 763 2223433 1 1235578888885 122 38887653 23444677888888877652 2
Q ss_pred EEEEE
Q 047315 296 VRIKT 300 (417)
Q Consensus 296 i~i~~ 300 (417)
|++|+
T Consensus 218 ISvKS 222 (425)
T PF14592_consen 218 ISVKS 222 (425)
T ss_dssp EEEES
T ss_pred EEeec
Confidence 55554
No 82
>PLN02480 Probable pectinesterase
Probab=94.22 E-value=2.7 Score=41.10 Aligned_cols=114 Identities=11% Similarity=0.054 Sum_probs=76.9
Q ss_pred EEeceecEEEEeEEEECCCC---C--CCCCeEEe-ecceeEEEEeeEEecCCceEEecCCceeEEEEeeEEcCCceEEEc
Q 047315 195 ALVECKNFRGSKIKISAPAN---S--PNTDGIHI-ERSSSVHVSRSHIGTGDDCISVGQGNSEVTIASITCGPGHGISVG 268 (417)
Q Consensus 195 ~~~~~~~v~i~n~~i~~~~~---~--~~~DGi~~-~~s~nv~I~n~~i~~gdD~i~i~s~s~nv~i~n~~~~~~~gi~ig 268 (417)
......+++++|++|.+... . ....++.+ ..+.++.++||.|.+..|-+.... ..-.++||++.+.-.+-+|
T Consensus 127 vtV~a~~f~a~nLTf~Nta~~g~~~~~~~QAVAl~v~gDra~f~~c~f~G~QDTLy~~~--gR~yf~~C~IeG~VDFIFG 204 (343)
T PLN02480 127 FTVEAPHFVAFGISIRNDAPTGMAFTSENQSVAAFVGADKVAFYHCAFYSTHNTLFDYK--GRHYYHSCYIQGSIDFIFG 204 (343)
T ss_pred EEEECCCEEEEeeEEEecCCCCCCCCCCCceEEEEecCCcEEEEeeEEecccceeEeCC--CCEEEEeCEEEeeeeEEcc
Confidence 34456899999999999631 1 12234555 347899999999999999887553 4788999999877677776
Q ss_pred ccccCCCCCcEEEEEEEeeEEecCc------eEEEEEEecCCCCCeeEEeEEEEeEEEecC
Q 047315 269 SLGRYPNEGDVRGLVVRDSTMTGTM------NGVRIKTWANSPGSSAATNMTFENIIMNNV 323 (417)
Q Consensus 269 s~~~~~~~~~v~ni~i~n~~~~~~~------~gi~i~~~~~~~~g~~i~ni~~~ni~~~~~ 323 (417)
.. ...|+||++.... .|. |...... ... -....|.|+++...
T Consensus 205 ~g----------~a~fe~C~i~s~~~~~~~~~G~-ITA~~r~-~~~-~~GfvF~~C~i~g~ 252 (343)
T PLN02480 205 RG----------RSIFHNCEIFVIADRRVKIYGS-ITAHNRE-SED-NSGFVFIKGKVYGI 252 (343)
T ss_pred ce----------eEEEEccEEEEecCCCCCCceE-EEcCCCC-CCC-CCEEEEECCEEccc
Confidence 53 4688888887542 122 3222211 122 35678999998764
No 83
>TIGR03804 para_beta_helix parallel beta-helix repeat (two copies). This model represents a tandem pair of an approximately 22-amino acid (each) repeat homologous to the beta-strand repeats that stack in a right-handed parallel beta-helix in the periplasmic C-5 mannuronan epimerase, AlgA, of Pseudomonas aeruginosa. A homology domain consisting of a longer tandem array of these repeats is described in the SMART database as CASH (SM00722), and is found in many carbohydrate-binding proteins and sugar hydrolases. A single repeat is represented by SM00710. This TIGRFAMs model represents a flavor of the parallel beta-helix-forming repeat based on prokaryotic sequences only in its seed alignment, although it also finds many eukaryotic sequences.
Probab=93.66 E-value=0.098 Score=34.53 Aligned_cols=39 Identities=26% Similarity=0.176 Sum_probs=19.4
Q ss_pred EEEeceecEEEEeEEEECCCCCCCCCeEEeecceeEEEEeeEEe
Q 047315 194 IALVECKNFRGSKIKISAPANSPNTDGIHIERSSSVHVSRSHIG 237 (417)
Q Consensus 194 i~~~~~~~v~i~n~~i~~~~~~~~~DGi~~~~s~nv~I~n~~i~ 237 (417)
|.+..+.+.+|++.++.. +.+||++..+++-+|+++.+.
T Consensus 2 I~l~~s~~~~i~~N~i~~-----~~~GI~~~~s~~n~i~~N~~~ 40 (44)
T TIGR03804 2 IYLESSSNNTLENNTASN-----NSYGIYLTDSSNNTLSNNTAS 40 (44)
T ss_pred EEEEecCCCEEECcEEeC-----CCCEEEEEeCCCCEeECCEEE
Confidence 444445555555555553 334555555555555554444
No 84
>TIGR03804 para_beta_helix parallel beta-helix repeat (two copies). This model represents a tandem pair of an approximately 22-amino acid (each) repeat homologous to the beta-strand repeats that stack in a right-handed parallel beta-helix in the periplasmic C-5 mannuronan epimerase, AlgA, of Pseudomonas aeruginosa. A homology domain consisting of a longer tandem array of these repeats is described in the SMART database as CASH (SM00722), and is found in many carbohydrate-binding proteins and sugar hydrolases. A single repeat is represented by SM00710. This TIGRFAMs model represents a flavor of the parallel beta-helix-forming repeat based on prokaryotic sequences only in its seed alignment, although it also finds many eukaryotic sequences.
Probab=93.60 E-value=0.12 Score=34.04 Aligned_cols=40 Identities=23% Similarity=0.251 Sum_probs=29.4
Q ss_pred eEEeecceeEEEEeeEEecCCceEEecCCceeEEEEeeEEc
Q 047315 220 GIHIERSSSVHVSRSHIGTGDDCISVGQGNSEVTIASITCG 260 (417)
Q Consensus 220 Gi~~~~s~nv~I~n~~i~~gdD~i~i~s~s~nv~i~n~~~~ 260 (417)
||.++.+.+.+|+++.+....|||.+.. +++-+|+++++.
T Consensus 1 GI~l~~s~~~~i~~N~i~~~~~GI~~~~-s~~n~i~~N~~~ 40 (44)
T TIGR03804 1 GIYLESSSNNTLENNTASNNSYGIYLTD-SSNNTLSNNTAS 40 (44)
T ss_pred CEEEEecCCCEEECcEEeCCCCEEEEEe-CCCCEeECCEEE
Confidence 5777777777788888887777887766 566677776664
No 85
>PF07602 DUF1565: Protein of unknown function (DUF1565); InterPro: IPR011459 These proteins share a region of homology in their N termini, and are found in several phylogenetically diverse bacteria and in the archaeon Methanosarcina acetivorans. Some of these proteins also contain characterised domains such as IPR001119 from INTERPRO (e.g. Q8YWJ6 from SWISSPROT) and IPR005084 from INTERPRO (e.g. Q9FBS2 from SWISSPROT).
Probab=93.57 E-value=0.71 Score=42.78 Aligned_cols=132 Identities=18% Similarity=0.208 Sum_probs=73.5
Q ss_pred eEEEeceecEEEEeEEEECCCCCCCCCeEEeecceeEEEEeeEEecC-CceEEecCCceeEEEEeeEEcCCceEEEcccc
Q 047315 193 HIALVECKNFRGSKIKISAPANSPNTDGIHIERSSSVHVSRSHIGTG-DDCISVGQGNSEVTIASITCGPGHGISVGSLG 271 (417)
Q Consensus 193 ~i~~~~~~~v~i~n~~i~~~~~~~~~DGi~~~~s~nv~I~n~~i~~g-dD~i~i~s~s~nv~i~n~~~~~~~gi~igs~~ 271 (417)
.+.+....+.+|++++|.++.. ...-|+++.++ +.+|+||+|.+. .++ +.+-...
T Consensus 90 n~tI~~~~~~~i~GvtItN~n~-~~g~Gi~Iess-~~tI~Nntf~~~~~~G----------------------I~v~g~~ 145 (246)
T PF07602_consen 90 NVTIILANNATISGVTITNPNI-ARGTGIWIESS-SPTIANNTFTNNGREG----------------------IFVTGTS 145 (246)
T ss_pred eEEEEecCCCEEEEEEEEcCCC-CcceEEEEecC-CcEEEeeEEECCcccc----------------------EEEEeee
Confidence 3445556677888888888631 13446666654 666666666652 333 3331110
Q ss_pred cCCCCCcEEEEEEEeeEEecCceEEEEEEecCCCCCeeEEeEEEEeEEEecCCccEEEEeeeCCCCCCC-CC-CCCceeE
Q 047315 272 RYPNEGDVRGLVVRDSTMTGTMNGVRIKTWANSPGSSAATNMTFENIIMNNVSNPIIIDQAYCPFTSCP-TK-PPSRVKL 349 (417)
Q Consensus 272 ~~~~~~~v~ni~i~n~~~~~~~~gi~i~~~~~~~~g~~i~ni~~~ni~~~~~~~~i~i~~~~~~~~~~~-~~-~~~~~~v 349 (417)
-...+.++.|+++.+.....|+.+..... + +.| .++|..+++...++.+...- ++... .+ .+.+..+
T Consensus 146 ---~~~~i~~~vI~GN~~~~~~~Gi~i~~~~~---~--~~n-~I~NN~I~~N~~Gi~~~~~~--pDlG~~s~~~~g~N~~ 214 (246)
T PF07602_consen 146 ---ANPGINGNVISGNSIYFNKTGISISDNAA---P--VEN-KIENNIIENNNIGIVAIGDA--PDLGTGSEGSPGNNIF 214 (246)
T ss_pred ---cCCcccceEeecceEEecCcCeEEEcccC---C--ccc-eeeccEEEeCCcCeEeeccC--CccccCCCCCCCCcEE
Confidence 12456778899999999888998865442 2 122 33666676665576655322 22111 01 1223356
Q ss_pred eeEEEEeEEE
Q 047315 350 SDIYFKNIRG 359 (417)
Q Consensus 350 ~nI~~~ni~~ 359 (417)
++=..-||..
T Consensus 215 ~~N~~~Dl~~ 224 (246)
T PF07602_consen 215 RNNGRYDLNN 224 (246)
T ss_pred ecCcceeeEe
Confidence 6666666665
No 86
>PLN02708 Probable pectinesterase/pectinesterase inhibitor
Probab=93.15 E-value=6.3 Score=41.18 Aligned_cols=114 Identities=14% Similarity=0.156 Sum_probs=76.9
Q ss_pred eceecEEEEeEEEECCCCCCCCCeEEee-cceeEEEEeeEEecCCceEEecCCceeEEEEeeEEcCCceEEEcccccCCC
Q 047315 197 VECKNFRGSKIKISAPANSPNTDGIHIE-RSSSVHVSRSHIGTGDDCISVGQGNSEVTIASITCGPGHGISVGSLGRYPN 275 (417)
Q Consensus 197 ~~~~~v~i~n~~i~~~~~~~~~DGi~~~-~s~nv~I~n~~i~~gdD~i~i~s~s~nv~i~n~~~~~~~gi~igs~~~~~~ 275 (417)
...+++..+|++|.+.........+.+. .+..+.+.||.|.+..|-+...+ ..-.+++|++.+.-++-+|..
T Consensus 327 v~~~~f~a~~it~~Ntag~~~~QAVAlrv~~D~~~f~~c~~~G~QDTLy~~~--~rq~y~~C~I~GtVDFIFG~a----- 399 (553)
T PLN02708 327 VLGDGFMARDLTIQNTAGPDAHQAVAFRSDSDLSVIENCEFLGNQDTLYAHS--LRQFYKSCRIQGNVDFIFGNS----- 399 (553)
T ss_pred EEcCCeEEEeeEEEcCCCCCCCceEEEEecCCcEEEEeeeeeeccccceeCC--CceEEEeeEEeecCCEEecCc-----
Confidence 4567899999999986432222333332 35899999999999999888765 356789999988878888654
Q ss_pred CCcEEEEEEEeeEEecCc------eE--EEEEEecCCC-CCeeEEeEEEEeEEEecCC
Q 047315 276 EGDVRGLVVRDSTMTGTM------NG--VRIKTWANSP-GSSAATNMTFENIIMNNVS 324 (417)
Q Consensus 276 ~~~v~ni~i~n~~~~~~~------~g--i~i~~~~~~~-~g~~i~ni~~~ni~~~~~~ 324 (417)
.+.|+||++.-.. .| -.| +..++. ... -..+.|.|+++....
T Consensus 400 -----~avfq~c~i~~~~~~~~~~~~~~~~i-TA~~r~~~~~-~~G~vf~~C~it~~~ 450 (553)
T PLN02708 400 -----AAVFQDCAILIAPRQLKPEKGENNAV-TAHGRTDPAQ-STGFVFQNCLINGTE 450 (553)
T ss_pred -----eEEEEccEEEEeccccCCCCCCceEE-EeCCCCCCCC-CceEEEEccEEecCC
Confidence 4788999887321 11 223 222211 111 367899999997653
No 87
>PLN02682 pectinesterase family protein
Probab=92.79 E-value=2.7 Score=41.33 Aligned_cols=114 Identities=9% Similarity=0.014 Sum_probs=75.4
Q ss_pred EeceecEEEEeEEEECCCCC-------CCCCeEEeecceeEEEEeeEEecCCceEEecCCceeEEEEeeEEcCCceEEEc
Q 047315 196 LVECKNFRGSKIKISAPANS-------PNTDGIHIERSSSVHVSRSHIGTGDDCISVGQGNSEVTIASITCGPGHGISVG 268 (417)
Q Consensus 196 ~~~~~~v~i~n~~i~~~~~~-------~~~DGi~~~~s~nv~I~n~~i~~gdD~i~i~s~s~nv~i~n~~~~~~~gi~ig 268 (417)
....+++..+|++|.+.... ..+-.+.+. +.+..+.+|.|.+..|-+.... ..-.++||++.+.-++-+|
T Consensus 159 ~v~a~~F~a~nlTf~Nt~~~~~~g~~g~QAVAL~v~-gDr~~fy~C~f~G~QDTLy~~~--gRqyf~~C~IeG~VDFIFG 235 (369)
T PLN02682 159 AVNSPYFIAKNITFKNTAPVPPPGALGKQAVALRIS-ADTAAFYGCKFLGAQDTLYDHL--GRHYFKDCYIEGSVDFIFG 235 (369)
T ss_pred EEECCCeEEEeeEEEcccccCCCCCCcccEEEEEec-CCcEEEEcceEeccccceEECC--CCEEEEeeEEcccccEEec
Confidence 34566899999999985321 112233333 6899999999999999887654 4689999999887788776
Q ss_pred ccccCCCCCcEEEEEEEeeEEecCce-EEEEEEecCCCCCeeEEeEEEEeEEEecC
Q 047315 269 SLGRYPNEGDVRGLVVRDSTMTGTMN-GVRIKTWANSPGSSAATNMTFENIIMNNV 323 (417)
Q Consensus 269 s~~~~~~~~~v~ni~i~n~~~~~~~~-gi~i~~~~~~~~g~~i~ni~~~ni~~~~~ 323 (417)
.. ...|++|++..... .-.|.......... -....|.|+++...
T Consensus 236 ~g----------~a~Fe~C~I~s~~~~~G~ITA~~r~~~~~-~~GfvF~~C~itg~ 280 (369)
T PLN02682 236 NG----------LSLYEGCHLHAIARNFGALTAQKRQSVLE-DTGFSFVNCKVTGS 280 (369)
T ss_pred Cc----------eEEEEccEEEEecCCCeEEecCCCCCCCC-CceEEEEeeEecCC
Confidence 53 46888888875322 11232211110111 35778999999874
No 88
>PLN02665 pectinesterase family protein
Probab=92.27 E-value=4.2 Score=40.08 Aligned_cols=116 Identities=11% Similarity=0.082 Sum_probs=78.0
Q ss_pred EEEeceecEEEEeEEEECCCCC-------CCCCeEEeecceeEEEEeeEEecCCceEEecCCceeEEEEeeEEcCCceEE
Q 047315 194 IALVECKNFRGSKIKISAPANS-------PNTDGIHIERSSSVHVSRSHIGTGDDCISVGQGNSEVTIASITCGPGHGIS 266 (417)
Q Consensus 194 i~~~~~~~v~i~n~~i~~~~~~-------~~~DGi~~~~s~nv~I~n~~i~~gdD~i~i~s~s~nv~i~n~~~~~~~gi~ 266 (417)
.....++++..+|++|.+.... ...-.+.+. +....+.||.|.+..|-+.... ..-.+++|++.+.-++-
T Consensus 148 Tv~v~a~~F~a~nitf~Nta~~~~~~~~g~QAVAl~v~-gDka~f~~C~f~G~QDTL~~~~--gr~yf~~CyIeG~VDFI 224 (366)
T PLN02665 148 TLIVESDYFMAANIIIKNSAPRPDGKRKGAQAVAMRIS-GDKAAFYNCRFIGFQDTLCDDK--GRHFFKDCYIEGTVDFI 224 (366)
T ss_pred EEEEECCCeEEEeeEEEeCCCCcCCCCCCcceEEEEEc-CCcEEEEcceeccccceeEeCC--CCEEEEeeEEeecccee
Confidence 3345678999999999985321 122234444 5889999999999999887654 46889999998877777
Q ss_pred EcccccCCCCCcEEEEEEEeeEEecCceE--EEEEEecCCCC-CeeEEeEEEEeEEEecCC
Q 047315 267 VGSLGRYPNEGDVRGLVVRDSTMTGTMNG--VRIKTWANSPG-SSAATNMTFENIIMNNVS 324 (417)
Q Consensus 267 igs~~~~~~~~~v~ni~i~n~~~~~~~~g--i~i~~~~~~~~-g~~i~ni~~~ni~~~~~~ 324 (417)
+|.. ...|++|++.....+ -.|. ..++.. .. -....|.|+++.+..
T Consensus 225 FG~g----------~a~fe~C~i~s~~~~~~g~IT-A~~r~~~~~-~~GfvF~~C~itg~~ 273 (366)
T PLN02665 225 FGSG----------KSLYLNTELHVVGDGGLRVIT-AQARNSEAE-DSGFSFVHCKVTGTG 273 (366)
T ss_pred cccc----------ceeeEccEEEEecCCCcEEEE-cCCCCCCCC-CceEEEEeeEEecCC
Confidence 7653 357888888765443 2222 222111 11 356789999998754
No 89
>PLN02634 probable pectinesterase
Probab=91.59 E-value=3.3 Score=40.55 Aligned_cols=111 Identities=9% Similarity=0.041 Sum_probs=73.4
Q ss_pred ceecEEEEeEEEECCCCC-------CCCCeEEeecceeEEEEeeEEecCCceEEecCCceeEEEEeeEEcCCceEEEccc
Q 047315 198 ECKNFRGSKIKISAPANS-------PNTDGIHIERSSSVHVSRSHIGTGDDCISVGQGNSEVTIASITCGPGHGISVGSL 270 (417)
Q Consensus 198 ~~~~v~i~n~~i~~~~~~-------~~~DGi~~~~s~nv~I~n~~i~~gdD~i~i~s~s~nv~i~n~~~~~~~gi~igs~ 270 (417)
..+++..+|++|.+.... ...-.+.+. +....+.+|.|.+..|-+.... ..-.+++|++.+.-++-+|..
T Consensus 147 ~a~~F~a~niTf~Nta~~~~~g~~~~QAVAl~v~-gDra~f~~C~f~G~QDTL~~~~--gR~yf~~CyIeG~VDFIFG~g 223 (359)
T PLN02634 147 YANYFTARNISFKNTAPAPMPGMQGWQAVAFRIS-GDKAFFFGCGFYGAQDTLCDDA--GRHYFKECYIEGSIDFIFGNG 223 (359)
T ss_pred ECCCeEEEeCeEEeCCccCCCCCCCCceEEEEec-CCcEEEEEeEEecccceeeeCC--CCEEEEeeEEcccccEEcCCc
Confidence 456788888888875311 122233334 5889999999999999887654 478999999987777777653
Q ss_pred ccCCCCCcEEEEEEEeeEEecCceE-EEEEEecCCC-CCeeEEeEEEEeEEEecC
Q 047315 271 GRYPNEGDVRGLVVRDSTMTGTMNG-VRIKTWANSP-GSSAATNMTFENIIMNNV 323 (417)
Q Consensus 271 ~~~~~~~~v~ni~i~n~~~~~~~~g-i~i~~~~~~~-~g~~i~ni~~~ni~~~~~ 323 (417)
...|+||++...... -.| +..++. ... -....|.|+++...
T Consensus 224 ----------~a~Fe~C~I~s~~~~~g~I-TA~~R~~~~~-~~GfvF~~C~vtg~ 266 (359)
T PLN02634 224 ----------RSMYKDCELHSIASRFGSI-AAHGRTCPEE-KTGFAFVGCRVTGT 266 (359)
T ss_pred ----------eEEEeccEEEEecCCCcEE-EeCCCCCCCC-CcEEEEEcCEEcCC
Confidence 357888888764321 122 222211 111 36789999999874
No 90
>PF01095 Pectinesterase: Pectinesterase; InterPro: IPR000070 Pectinesterase 3.1.1.11 from EC (pectin methylesterase) catalyses the de-esterification of pectin into pectate and methanol. Pectin is one of the main components of the plant cell wall. In plants, pectinesterase plays an important role in cell wall metabolism during fruit ripening. In plant bacterial pathogens such as Erwinia carotovora and in fungal pathogens such as Aspergillus niger, pectinesterase is involved in maceration and soft-rotting of plant tissue. Plant pectinesterases are regulated by pectinesterase inhibitors, which are ineffective against microbial enzymes []. Prokaryotic and eukaryotic pectinesterases share a few regions of sequence similarity. The crystal structure of pectinesterase from Erwinia chrysanthemi revealed a beta-helix structure similar to that found in pectinolytic enzymes, though it is different from most structures of esterases []. The putative catalytic residues are in a similar location to those of the active site and substrate-binding cleft of pectate lyase.; GO: 0030599 pectinesterase activity, 0042545 cell wall modification, 0005618 cell wall; PDB: 1QJV_B 1XG2_A 1GQ8_A 2NTQ_A 2NTP_A 2NT9_A 2NT6_B 2NSP_B 2NTB_A 2NST_A ....
Probab=91.54 E-value=2.1 Score=41.15 Aligned_cols=114 Identities=13% Similarity=0.165 Sum_probs=67.5
Q ss_pred EeceecEEEEeEEEECCCCC--CCCCeEEeecceeEEEEeeEEecCCceEEecCCceeEEEEeeEEcCCceEEEcccccC
Q 047315 196 LVECKNFRGSKIKISAPANS--PNTDGIHIERSSSVHVSRSHIGTGDDCISVGQGNSEVTIASITCGPGHGISVGSLGRY 273 (417)
Q Consensus 196 ~~~~~~v~i~n~~i~~~~~~--~~~DGi~~~~s~nv~I~n~~i~~gdD~i~i~s~s~nv~i~n~~~~~~~gi~igs~~~~ 273 (417)
....+++.++|++|.+.... ..+-.+.+. +.++.+.+|.|.+..|-+.... .+..++||++.+.-.+-+|..
T Consensus 83 ~v~a~~f~~~nit~~Nt~g~~~~qAvAl~~~-~d~~~f~~c~~~g~QDTL~~~~--~r~y~~~c~IeG~vDFIfG~~--- 156 (298)
T PF01095_consen 83 SVNADDFTAENITFENTAGPSGGQAVALRVS-GDRAAFYNCRFLGYQDTLYANG--GRQYFKNCYIEGNVDFIFGNG--- 156 (298)
T ss_dssp EE-STT-EEEEEEEEEHCSGSG----SEEET--TSEEEEEEEEE-STT-EEE-S--SEEEEES-EEEESEEEEEESS---
T ss_pred cccccceeeeeeEEecCCCCcccceeeeeec-CCcEEEEEeEEccccceeeecc--ceeEEEeeEEEecCcEEECCe---
Confidence 34568999999999984321 123344444 4789999999999999887765 468899999987777878653
Q ss_pred CCCCcEEEEEEEeeEEecCc----eEEEEEEecC-CCCCeeEEeEEEEeEEEecCC
Q 047315 274 PNEGDVRGLVVRDSTMTGTM----NGVRIKTWAN-SPGSSAATNMTFENIIMNNVS 324 (417)
Q Consensus 274 ~~~~~v~ni~i~n~~~~~~~----~gi~i~~~~~-~~~g~~i~ni~~~ni~~~~~~ 324 (417)
...|+||++.... .+-.|..... .+.. -..++|.|+++....
T Consensus 157 -------~a~f~~c~i~~~~~~~~~~~~ItA~~r~~~~~--~~G~vF~~c~i~~~~ 203 (298)
T PF01095_consen 157 -------TAVFENCTIHSRRPGGGQGGYITAQGRTSPSQ--KSGFVFDNCTITGDS 203 (298)
T ss_dssp -------EEEEES-EEEE--SSTSSTEEEEEE---CTTS--S-EEEEES-EEEEST
T ss_pred -------eEEeeeeEEEEeccccccceeEEeCCccccCC--CeEEEEEEeEEecCc
Confidence 3578888887532 1223322211 1122 378899999998753
No 91
>PLN02170 probable pectinesterase/pectinesterase inhibitor
Probab=91.35 E-value=5.6 Score=41.10 Aligned_cols=117 Identities=11% Similarity=0.093 Sum_probs=77.4
Q ss_pred EEEeceecEEEEeEEEECCCCCC--CCCeEEeecceeEEEEeeEEecCCceEEecCCceeEEEEeeEEcCCceEEEcccc
Q 047315 194 IALVECKNFRGSKIKISAPANSP--NTDGIHIERSSSVHVSRSHIGTGDDCISVGQGNSEVTIASITCGPGHGISVGSLG 271 (417)
Q Consensus 194 i~~~~~~~v~i~n~~i~~~~~~~--~~DGi~~~~s~nv~I~n~~i~~gdD~i~i~s~s~nv~i~n~~~~~~~gi~igs~~ 271 (417)
......+++..+|++|.+..... ..-.+.+. +....+.+|.|.+..|-+...+ ..-.+++|++.+.-++-+|..
T Consensus 307 Tv~v~~~~F~a~nitf~Ntag~~~~QAVALrv~-gDr~~fy~C~f~GyQDTLy~~~--~Rqyy~~C~I~GtVDFIFG~a- 382 (529)
T PLN02170 307 TVAAMGDGFIARDITFVNSAGPNSEQAVALRVG-SDKSVVYRCSVEGYQDSLYTHS--KRQFYRETDITGTVDFIFGNS- 382 (529)
T ss_pred EEEEEcCCeEEEeeEEEecCCCCCCceEEEEec-CCcEEEEeeeEeccCCcceeCC--CCEEEEeeEEccccceecccc-
Confidence 33456678999999999864322 22334334 5889999999999999888765 356889999988777877653
Q ss_pred cCCCCCcEEEEEEEeeEEecCce---EEEEEEecCCCCCeeEEeEEEEeEEEecCC
Q 047315 272 RYPNEGDVRGLVVRDSTMTGTMN---GVRIKTWANSPGSSAATNMTFENIIMNNVS 324 (417)
Q Consensus 272 ~~~~~~~v~ni~i~n~~~~~~~~---gi~i~~~~~~~~g~~i~ni~~~ni~~~~~~ 324 (417)
...|+||++..... .-.|.......... -..+.|.|+++....
T Consensus 383 ---------~avFq~C~I~~~~~~~~~g~ITAq~R~~~~~-~~Gfvf~~C~it~~~ 428 (529)
T PLN02170 383 ---------AVVFQSCNIAARKPSGDRNYVTAQGRSDPNQ-NTGISIHNCRITAES 428 (529)
T ss_pred ---------eEEEeccEEEEecCCCCceEEEecCCCCCCC-CceEEEEeeEEecCC
Confidence 36888888865321 12332221111112 367889999998753
No 92
>PLN02916 pectinesterase family protein
Probab=91.26 E-value=5.9 Score=40.71 Aligned_cols=116 Identities=11% Similarity=0.075 Sum_probs=76.4
Q ss_pred EeceecEEEEeEEEECCCCCCCCCeEEee-cceeEEEEeeEEecCCceEEecCCceeEEEEeeEEcCCceEEEcccccCC
Q 047315 196 LVECKNFRGSKIKISAPANSPNTDGIHIE-RSSSVHVSRSHIGTGDDCISVGQGNSEVTIASITCGPGHGISVGSLGRYP 274 (417)
Q Consensus 196 ~~~~~~v~i~n~~i~~~~~~~~~DGi~~~-~s~nv~I~n~~i~~gdD~i~i~s~s~nv~i~n~~~~~~~gi~igs~~~~~ 274 (417)
....+++..+|++|.+.........+.+. .+....+.+|.|.+..|-+...+ ..-.+++|++.+.-.+-+|..
T Consensus 273 ~v~~~~F~A~nitf~Ntag~~~~QAVALrv~~D~a~fy~C~f~G~QDTLy~~~--~Rqyy~~C~I~GtVDFIFG~a---- 346 (502)
T PLN02916 273 GVSGDGFWARDITFENTAGPHKHQAVALRVSSDLSVFYRCSFKGYQDTLFVHS--LRQFYRDCHIYGTIDFIFGDA---- 346 (502)
T ss_pred EEECCCEEEEeeEEEeCCCCCCCceEEEEEcCCcEEEEeeeEeccCceeEeCC--CCEEEEecEEecccceeccCc----
Confidence 34556888999999985432222333332 35889999999999999888775 357889999988777877653
Q ss_pred CCCcEEEEEEEeeEEecCc----eEEEEEEecCCCCCeeEEeEEEEeEEEecCC
Q 047315 275 NEGDVRGLVVRDSTMTGTM----NGVRIKTWANSPGSSAATNMTFENIIMNNVS 324 (417)
Q Consensus 275 ~~~~v~ni~i~n~~~~~~~----~gi~i~~~~~~~~g~~i~ni~~~ni~~~~~~ 324 (417)
...|+||++.... ..-.|.......... -..+.|.|+++....
T Consensus 347 ------~avFq~C~I~~~~~~~~~~g~ITAq~r~~~~~-~tGfvf~~C~it~~~ 393 (502)
T PLN02916 347 ------AVVFQNCDIFVRRPMDHQGNMITAQGRDDPHE-NTGISIQHSRVRASP 393 (502)
T ss_pred ------eEEEecCEEEEecCCCCCcceEEecCCCCCCC-CcEEEEEeeEEecCc
Confidence 4678888886432 112332211111112 367889999998753
No 93
>PLN02671 pectinesterase
Probab=91.19 E-value=3.9 Score=40.11 Aligned_cols=111 Identities=14% Similarity=0.195 Sum_probs=72.8
Q ss_pred eceecEEEEeEEEECCCC----C--CCCCeEEeecceeEEEEeeEEecCCceEEecCCceeEEEEeeEEcCCceEEEccc
Q 047315 197 VECKNFRGSKIKISAPAN----S--PNTDGIHIERSSSVHVSRSHIGTGDDCISVGQGNSEVTIASITCGPGHGISVGSL 270 (417)
Q Consensus 197 ~~~~~v~i~n~~i~~~~~----~--~~~DGi~~~~s~nv~I~n~~i~~gdD~i~i~s~s~nv~i~n~~~~~~~gi~igs~ 270 (417)
...+++..+|++|.+... . ..+-.+.+. +.++.+.+|.|.+..|-+.... ..-.+++|++.+.-++-+|..
T Consensus 151 v~a~~F~a~nitfeNt~~~~~g~~~~QAVALrv~-gDra~f~~c~f~G~QDTLy~~~--gR~yf~~CyIeG~VDFIFG~g 227 (359)
T PLN02671 151 IESDYFCATGITFENTVVAEPGGQGMQAVALRIS-GDKAFFYKVRVLGAQDTLLDET--GSHYFYQCYIQGSVDFIFGNA 227 (359)
T ss_pred EECCceEEEeeEEEcCCCCCCCCCCccEEEEEEc-CccEEEEcceEeccccccEeCC--CcEEEEecEEEEeccEEecce
Confidence 345678888888887521 1 122334444 5899999999999999887654 367999999987777777653
Q ss_pred ccCCCCCcEEEEEEEeeEEecCc--eEEEEEEecC-CCCCeeEEeEEEEeEEEecC
Q 047315 271 GRYPNEGDVRGLVVRDSTMTGTM--NGVRIKTWAN-SPGSSAATNMTFENIIMNNV 323 (417)
Q Consensus 271 ~~~~~~~~v~ni~i~n~~~~~~~--~gi~i~~~~~-~~~g~~i~ni~~~ni~~~~~ 323 (417)
...|++|++.... .| .|..... .+.. -....|.|+++...
T Consensus 228 ----------~A~Fe~C~I~s~~~~~G-~ITA~~r~~~~~--~~GfvF~~C~itg~ 270 (359)
T PLN02671 228 ----------KSLYQDCVIQSTAKRSG-AIAAHHRDSPTE--DTGFSFVNCVINGT 270 (359)
T ss_pred ----------eEEEeccEEEEecCCCe-EEEeeccCCCCC--CccEEEEccEEccC
Confidence 3688888887542 23 2322211 1112 36778999999764
No 94
>PLN02432 putative pectinesterase
Probab=91.16 E-value=5.4 Score=38.09 Aligned_cols=112 Identities=13% Similarity=0.140 Sum_probs=74.6
Q ss_pred eceecEEEEeEEEECCCCC-CCCCeEEeecceeEEEEeeEEecCCceEEecCCceeEEEEeeEEcCCceEEEcccccCCC
Q 047315 197 VECKNFRGSKIKISAPANS-PNTDGIHIERSSSVHVSRSHIGTGDDCISVGQGNSEVTIASITCGPGHGISVGSLGRYPN 275 (417)
Q Consensus 197 ~~~~~v~i~n~~i~~~~~~-~~~DGi~~~~s~nv~I~n~~i~~gdD~i~i~s~s~nv~i~n~~~~~~~gi~igs~~~~~~ 275 (417)
...+++..+|++|.+.... ...-.+.+. +....+.+|.|.+..|-+.... ..-.++||++.+.-.+-+|..
T Consensus 91 v~a~~f~a~nlt~~Nt~g~~~QAvAl~v~-gDr~~f~~c~~~G~QDTLy~~~--gr~yf~~c~I~G~VDFIFG~g----- 162 (293)
T PLN02432 91 VLASDFVGRFLTIQNTFGSSGKAVALRVA-GDRAAFYGCRILSYQDTLLDDT--GRHYYRNCYIEGATDFICGNA----- 162 (293)
T ss_pred EECCCeEEEeeEEEeCCCCCCceEEEEEc-CCcEEEEcceEecccceeEECC--CCEEEEeCEEEecccEEecCc-----
Confidence 3557899999999985321 122233333 5899999999999999887654 367999999988777877653
Q ss_pred CCcEEEEEEEeeEEecCc--eEEEEEEecCCCCCeeEEeEEEEeEEEecC
Q 047315 276 EGDVRGLVVRDSTMTGTM--NGVRIKTWANSPGSSAATNMTFENIIMNNV 323 (417)
Q Consensus 276 ~~~v~ni~i~n~~~~~~~--~gi~i~~~~~~~~g~~i~ni~~~ni~~~~~ 323 (417)
...|++|++.... .| .|.......... -....|.|+++...
T Consensus 163 -----~a~Fe~c~i~s~~~~~g-~itA~~r~~~~~-~~Gfvf~~c~itg~ 205 (293)
T PLN02432 163 -----ASLFEKCHLHSLSPNNG-AITAQQRTSASE-NTGFTFLGCKLTGA 205 (293)
T ss_pred -----eEEEEeeEEEEecCCCC-eEEecCCCCCCC-CceEEEEeeEEccc
Confidence 3688888886432 23 332222111111 25788999999863
No 95
>PLN02506 putative pectinesterase/pectinesterase inhibitor
Probab=90.40 E-value=4.9 Score=41.79 Aligned_cols=114 Identities=11% Similarity=0.107 Sum_probs=76.8
Q ss_pred EEeceecEEEEeEEEECCCCCC--CCCeEEeecceeEEEEeeEEecCCceEEecCCceeEEEEeeEEcCCceEEEccccc
Q 047315 195 ALVECKNFRGSKIKISAPANSP--NTDGIHIERSSSVHVSRSHIGTGDDCISVGQGNSEVTIASITCGPGHGISVGSLGR 272 (417)
Q Consensus 195 ~~~~~~~v~i~n~~i~~~~~~~--~~DGi~~~~s~nv~I~n~~i~~gdD~i~i~s~s~nv~i~n~~~~~~~gi~igs~~~ 272 (417)
.....+++..+|++|.+..... ..-.+.+. +.++.+.+|.|.+..|-+...+ ..-.+++|++.+.-.+-+|..
T Consensus 314 ~~v~~~~F~a~nit~~Ntag~~~~QAVAl~v~-~D~~~fy~C~~~G~QDTLy~~~--~rqyy~~C~I~GtVDFIFG~a-- 388 (537)
T PLN02506 314 VAVSGRGFIARDITFRNTAGPQNHQAVALRVD-SDQSAFYRCSMEGYQDTLYAHS--LRQFYRECEIYGTIDFIFGNG-- 388 (537)
T ss_pred EEEEcCCeEEEeeEEEeCCCCCCCceEEEEec-CCcEEEEcceeecccccceecC--CceEEEeeEEecccceEccCc--
Confidence 3456788999999999854322 22333334 6899999999999999888765 356999999988777878663
Q ss_pred CCCCCcEEEEEEEeeEEecCce----EEEEEEecCCC-CCeeEEeEEEEeEEEecC
Q 047315 273 YPNEGDVRGLVVRDSTMTGTMN----GVRIKTWANSP-GSSAATNMTFENIIMNNV 323 (417)
Q Consensus 273 ~~~~~~v~ni~i~n~~~~~~~~----gi~i~~~~~~~-~g~~i~ni~~~ni~~~~~ 323 (417)
...|+||++..... .-.|.. .++. ... -..+.|.|+++...
T Consensus 389 --------~avfq~C~i~~r~~~~~~~~~iTA-~~r~~~~~-~~G~vf~~c~i~~~ 434 (537)
T PLN02506 389 --------AAVLQNCKIYTRVPLPLQKVTITA-QGRKSPHQ-STGFSIQDSYVLAT 434 (537)
T ss_pred --------eeEEeccEEEEccCCCCCCceEEc-cCCCCCCC-CcEEEEEcCEEccC
Confidence 36888888875321 123322 2211 111 35678999988764
No 96
>PLN02713 Probable pectinesterase/pectinesterase inhibitor
Probab=90.24 E-value=5.5 Score=41.70 Aligned_cols=114 Identities=10% Similarity=0.091 Sum_probs=75.3
Q ss_pred EeceecEEEEeEEEECCCCCCCCCeEEee-cceeEEEEeeEEecCCceEEecCCceeEEEEeeEEcCCceEEEcccccCC
Q 047315 196 LVECKNFRGSKIKISAPANSPNTDGIHIE-RSSSVHVSRSHIGTGDDCISVGQGNSEVTIASITCGPGHGISVGSLGRYP 274 (417)
Q Consensus 196 ~~~~~~v~i~n~~i~~~~~~~~~DGi~~~-~s~nv~I~n~~i~~gdD~i~i~s~s~nv~i~n~~~~~~~gi~igs~~~~~ 274 (417)
....+++..+|++|.+.........+.+. .+....+.+|.|.+..|-+...+ ..-.+++|++.+.-.+-+|..
T Consensus 336 ~v~~~~F~a~nitf~Ntag~~~~QAVAlrv~~D~~~fy~C~~~G~QDTLy~~~--~Rqyy~~C~I~GtVDFIFG~a---- 409 (566)
T PLN02713 336 AVVGQNFVAVNITFRNTAGPAKHQAVALRSGADLSTFYSCSFEAYQDTLYTHS--LRQFYRECDIYGTVDFIFGNA---- 409 (566)
T ss_pred EEECCCeEEEeeEEEeCCCCCCCceEEEEecCCcEEEEeeeeccCCcceEECC--CCEEEEeeEEecccceecccc----
Confidence 34558899999999985432222333332 35889999999999999888775 357999999987777777653
Q ss_pred CCCcEEEEEEEeeEEecCc----eEEEEEEecCCC-CCeeEEeEEEEeEEEecC
Q 047315 275 NEGDVRGLVVRDSTMTGTM----NGVRIKTWANSP-GSSAATNMTFENIIMNNV 323 (417)
Q Consensus 275 ~~~~v~ni~i~n~~~~~~~----~gi~i~~~~~~~-~g~~i~ni~~~ni~~~~~ 323 (417)
.+.|+||++.... ..-.|.. .++. ... -..+.|.|+++...
T Consensus 410 ------~avfq~C~i~~~~~~~~~~~~iTA-q~r~~~~~-~~G~vf~~c~i~~~ 455 (566)
T PLN02713 410 ------AVVFQNCNLYPRLPMQGQFNTITA-QGRTDPNQ-NTGTSIQNCTIKAA 455 (566)
T ss_pred ------eEEEeccEEEEecCCCCCcceeee-cCCCCCCC-CCEEEEEcCEEecC
Confidence 4788888886531 1112322 2211 111 36788999998764
No 97
>PLN02201 probable pectinesterase/pectinesterase inhibitor
Probab=90.11 E-value=9.3 Score=39.54 Aligned_cols=115 Identities=10% Similarity=0.065 Sum_probs=75.4
Q ss_pred EeceecEEEEeEEEECCCCCCCCCeEEee-cceeEEEEeeEEecCCceEEecCCceeEEEEeeEEcCCceEEEcccccCC
Q 047315 196 LVECKNFRGSKIKISAPANSPNTDGIHIE-RSSSVHVSRSHIGTGDDCISVGQGNSEVTIASITCGPGHGISVGSLGRYP 274 (417)
Q Consensus 196 ~~~~~~v~i~n~~i~~~~~~~~~DGi~~~-~s~nv~I~n~~i~~gdD~i~i~s~s~nv~i~n~~~~~~~gi~igs~~~~~ 274 (417)
....+++..+|++|.+.........+.+. .+....+.+|.|.+..|-+...+ ..-.+++|++.+.-.+-+|..
T Consensus 289 ~v~~~~F~a~nitf~Ntag~~~~QAVAlrv~~D~~~fy~C~f~G~QDTLy~~~--~Rqyy~~C~I~GtVDFIFG~a---- 362 (520)
T PLN02201 289 AVSGRGFIARDITFQNTAGPEKHQAVALRSDSDLSVFYRCAMRGYQDTLYTHT--MRQFYRECRITGTVDFIFGDA---- 362 (520)
T ss_pred EEECCCeEEEeeEEEECCCCCCCceEEEEEcCCcEEEEeeeeeccCCeeEeCC--CCEEEEeeEEeecccEEecCc----
Confidence 34567889999999985432222333332 35889999999999999888765 356889999988777878653
Q ss_pred CCCcEEEEEEEeeEEecCc----eEEEEEEecCCCCCeeEEeEEEEeEEEecC
Q 047315 275 NEGDVRGLVVRDSTMTGTM----NGVRIKTWANSPGSSAATNMTFENIIMNNV 323 (417)
Q Consensus 275 ~~~~v~ni~i~n~~~~~~~----~gi~i~~~~~~~~g~~i~ni~~~ni~~~~~ 323 (417)
...|+||++.... ..-.|.......... -..+.|.|+++...
T Consensus 363 ------~avf~~C~i~~~~~~~~~~~~iTAq~r~~~~~-~~Gfvf~~C~it~~ 408 (520)
T PLN02201 363 ------TAVFQNCQILAKKGLPNQKNTITAQGRKDPNQ-PTGFSIQFSNISAD 408 (520)
T ss_pred ------eEEEEccEEEEecCCCCCCceEEecCCCCCCC-CcEEEEEeeEEecC
Confidence 3688888886522 112232221111112 35788999998764
No 98
>PRK10531 acyl-CoA thioesterase; Provisional
Probab=90.11 E-value=7.1 Score=39.15 Aligned_cols=118 Identities=8% Similarity=0.034 Sum_probs=76.9
Q ss_pred EEEeceecEEEEeEEEECCCCC------CCCCeEEeecceeEEEEeeEEecCCceEEecCC----------ceeEEEEee
Q 047315 194 IALVECKNFRGSKIKISAPANS------PNTDGIHIERSSSVHVSRSHIGTGDDCISVGQG----------NSEVTIASI 257 (417)
Q Consensus 194 i~~~~~~~v~i~n~~i~~~~~~------~~~DGi~~~~s~nv~I~n~~i~~gdD~i~i~s~----------s~nv~i~n~ 257 (417)
......+++..+|++|.+.... ...-.+.+. +..+.+.+|.|.+..|-+..... ...-.+++|
T Consensus 200 Tv~v~ad~F~a~NLTf~Ntag~~~~~~~~QAVALrv~-GDra~fy~C~flG~QDTLy~~~~~~~~~~~~~~~gRqYf~~C 278 (422)
T PRK10531 200 VFWSQNNGLQLQNLTIENTLGDSVDAGNHPAVALRTD-GDKVQIENVNILGRQDTFFVTNSGVQNRLETDRQPRTYVKNS 278 (422)
T ss_pred EEEEECCCEEEEeeEEEeCCCCCCCCCcceeEEEEEc-CCcEEEEeeEEecccceeeeccccccccccccccccEEEEeC
Confidence 3345678999999999985421 112233333 58999999999999998877421 236899999
Q ss_pred EEcCCceEEEcccccCCCCCcEEEEEEEeeEEecCce----EEEEEEecCCCCCeeEEeEEEEeEEEecCC
Q 047315 258 TCGPGHGISVGSLGRYPNEGDVRGLVVRDSTMTGTMN----GVRIKTWANSPGSSAATNMTFENIIMNNVS 324 (417)
Q Consensus 258 ~~~~~~gi~igs~~~~~~~~~v~ni~i~n~~~~~~~~----gi~i~~~~~~~~g~~i~ni~~~ni~~~~~~ 324 (417)
++.+.-.+-+|.. ...|+||++..... .-.|...... ... -..++|.|+++....
T Consensus 279 yIeG~VDFIFG~g----------~AvFenC~I~s~~~~~~~~g~ITA~~t~-~~~-~~GfvF~nCrit~~g 337 (422)
T PRK10531 279 YIEGDVDFVFGRG----------AVVFDNTEFRVVNSRTQQEAYVFAPATL-PNI-YYGFLAINSRFNASG 337 (422)
T ss_pred EEeecccEEccCc----------eEEEEcCEEEEecCCCCCceEEEecCCC-CCC-CCEEEEECCEEecCC
Confidence 9987777877653 46788888866321 1223222111 112 356889999998743
No 99
>PLN02217 probable pectinesterase/pectinesterase inhibitor
Probab=90.08 E-value=4.4 Score=43.13 Aligned_cols=113 Identities=11% Similarity=0.086 Sum_probs=74.5
Q ss_pred ceecEEEEeEEEECCCCCCCCCeEEee-cceeEEEEeeEEecCCceEEecCCceeEEEEeeEEcCCceEEEcccccCCCC
Q 047315 198 ECKNFRGSKIKISAPANSPNTDGIHIE-RSSSVHVSRSHIGTGDDCISVGQGNSEVTIASITCGPGHGISVGSLGRYPNE 276 (417)
Q Consensus 198 ~~~~v~i~n~~i~~~~~~~~~DGi~~~-~s~nv~I~n~~i~~gdD~i~i~s~s~nv~i~n~~~~~~~gi~igs~~~~~~~ 276 (417)
..+++..+|++|.+.........+.+. .+....+.+|.|.+..|-+...+ ..-.+++|++.+.-.+-+|..
T Consensus 335 ~g~~F~a~nitf~Ntag~~~~QAVAlrv~~Dra~fy~C~f~G~QDTLy~~~--~Rqyy~~C~I~GtVDFIFG~a------ 406 (670)
T PLN02217 335 VGDHFIAKNIGFENTAGAIKHQAVAIRVLSDESIFYNCKFDGYQDTLYAHS--HRQFYRDCTISGTIDFLFGDA------ 406 (670)
T ss_pred ECCCeEEEeeEEEeCCCCCCCceEEEEecCCcEEEEcceeeeccchhccCC--CcEEEEeCEEEEeccEEecCc------
Confidence 457888999999985432222333332 35889999999999888887764 467899999987777777653
Q ss_pred CcEEEEEEEeeEEecCc----eEEEEEEecCCCC-CeeEEeEEEEeEEEecCC
Q 047315 277 GDVRGLVVRDSTMTGTM----NGVRIKTWANSPG-SSAATNMTFENIIMNNVS 324 (417)
Q Consensus 277 ~~v~ni~i~n~~~~~~~----~gi~i~~~~~~~~-g~~i~ni~~~ni~~~~~~ 324 (417)
...|+||++.... ..-.|.. .++.. .. -..+.|.|+++....
T Consensus 407 ----~avfq~C~I~~r~~~~~~~~~ITA-qgr~~~~~-~tGfvf~~C~i~~~~ 453 (670)
T PLN02217 407 ----AAVFQNCTLLVRKPLLNQACPITA-HGRKDPRE-STGFVLQGCTIVGEP 453 (670)
T ss_pred ----eEEEEccEEEEccCCCCCceeEec-CCCCCCCC-CceEEEEeeEEecCc
Confidence 3678888886431 1123322 22211 12 367899999998753
No 100
>PLN02497 probable pectinesterase
Probab=90.01 E-value=6.6 Score=38.14 Aligned_cols=113 Identities=12% Similarity=0.024 Sum_probs=73.5
Q ss_pred eceecEEEEeEEEECCCCCC---------CCCeEEeecceeEEEEeeEEecCCceEEecCCceeEEEEeeEEcCCceEEE
Q 047315 197 VECKNFRGSKIKISAPANSP---------NTDGIHIERSSSVHVSRSHIGTGDDCISVGQGNSEVTIASITCGPGHGISV 267 (417)
Q Consensus 197 ~~~~~v~i~n~~i~~~~~~~---------~~DGi~~~~s~nv~I~n~~i~~gdD~i~i~s~s~nv~i~n~~~~~~~gi~i 267 (417)
...+++..+|++|.+..... .+-.+.+. +.+..+.||.|.+..|-+.... ..-.+++|++.+.-++-+
T Consensus 112 v~a~~f~a~nlT~~Nt~~~~~~~~~~~~~QAVAl~v~-gDr~~fy~C~f~G~QDTLy~~~--gRqyf~~C~IeG~VDFIF 188 (331)
T PLN02497 112 TLADNTVVKSITFANSYNFPSKGNKNPRVPAVAAMIG-GDKSAFYSCGFAGVQDTLWDSD--GRHYFKRCTIQGAVDFIF 188 (331)
T ss_pred EecCCeEEEccEEEeCCCCccccCCCCCcceEEEEec-CCcEEEEeeEEeccccceeeCC--CcEEEEeCEEEecccEEc
Confidence 34678999999999854211 11223333 5889999999999999886554 468999999987777777
Q ss_pred cccccCCCCCcEEEEEEEeeEEecCce------EEEEEEecCCCCCeeEEeEEEEeEEEecC
Q 047315 268 GSLGRYPNEGDVRGLVVRDSTMTGTMN------GVRIKTWANSPGSSAATNMTFENIIMNNV 323 (417)
Q Consensus 268 gs~~~~~~~~~v~ni~i~n~~~~~~~~------gi~i~~~~~~~~g~~i~ni~~~ni~~~~~ 323 (417)
|.. ...|+||++..... .-.|.......... -....|.|+++...
T Consensus 189 G~g----------~a~Fe~C~I~s~~~~~~~~~~g~ITA~~r~~~~~-~~GfvF~~C~itg~ 239 (331)
T PLN02497 189 GSG----------QSIYESCVIQVLGGQLEPGLAGFITAQGRTNPYD-ANGFVFKNCLVYGT 239 (331)
T ss_pred cCc----------eEEEEccEEEEecCcCCCCCceEEEecCCCCCCC-CceEEEEccEEccC
Confidence 653 36888888874321 12232221111111 35678999999864
No 101
>PRK10123 wcaM putative colanic acid biosynthesis protein; Provisional
Probab=89.98 E-value=9.2 Score=35.94 Aligned_cols=171 Identities=16% Similarity=0.171 Sum_probs=93.6
Q ss_pred eecEEEEeEEEECCCCCCCCCeEEeec-----ceeEEEEeeEEecCCceE---EecCCceeEEEEeeEEcCC--ceEEEc
Q 047315 199 CKNFRGSKIKISAPANSPNTDGIHIER-----SSSVHVSRSHIGTGDDCI---SVGQGNSEVTIASITCGPG--HGISVG 268 (417)
Q Consensus 199 ~~~v~i~n~~i~~~~~~~~~DGi~~~~-----s~nv~I~n~~i~~gdD~i---~i~s~s~nv~i~n~~~~~~--~gi~ig 268 (417)
.++..|+++.+.+-+ + -.-|.+.+ -+|.+|.+.++....=+| .+......+.|.||.|..= +++..-
T Consensus 121 gsdc~ikgiamsgfg--p-vtqiyiggk~prvmrnl~id~itv~~anyailrqgfhnq~dgaritn~rfs~lqgdaiewn 197 (464)
T PRK10123 121 GSDCTIKGLAMSGFG--P-VTQIYIGGKNKRVMRNLTIDNLTVSHANYAILRQGFHNQIIGANITNCKFSDLQGDAIEWN 197 (464)
T ss_pred cCceEEeeeeecccC--c-eeEEEEcCCCchhhhccEEccEEEeeccHHHHhhhhhhccccceeeccccccccCceEEEE
Confidence 345566666665411 1 11244433 356777777765421111 0001135678889988753 333321
Q ss_pred cc-ccCCCCCcEEEEEEEeeEEecC--ceEEEEEEe----cC--CCCCeeEEeEEEEeEEEecCCccEEEEeeeCCCCCC
Q 047315 269 SL-GRYPNEGDVRGLVVRDSTMTGT--MNGVRIKTW----AN--SPGSSAATNMTFENIIMNNVSNPIIIDQAYCPFTSC 339 (417)
Q Consensus 269 s~-~~~~~~~~v~ni~i~n~~~~~~--~~gi~i~~~----~~--~~~g~~i~ni~~~ni~~~~~~~~i~i~~~~~~~~~~ 339 (417)
-. .. ..--+++=.++.+.+.+. ..||.|... +. ++... ++|+.+-||+.+++.+.+.+.
T Consensus 198 vaind--r~ilisdhvie~inctngkinwgigiglagstydn~ype~q~-vknfvvanitgs~crqlvhve--------- 265 (464)
T PRK10123 198 VAIND--RDILISDHVIERINCTNGKINWGIGIGLAGSTYDNNYPEDQA-VKNFVVANITGSDCRQLIHVE--------- 265 (464)
T ss_pred EEecc--cceeeehheheeecccCCcccceeeeeeccccccCCCchhhh-hhhEEEEeccCcChhheEEec---------
Confidence 10 00 112233444444444432 346666531 11 12334 899999999999998777665
Q ss_pred CCCCCCceeEeeEEEEeEEEEecCC-----ceEEEeecCCCceeeEEEEeEEEEeCCC
Q 047315 340 PTKPPSRVKLSDIYFKNIRGTSSSA-----VAVALECSKGIPCQNIYLENVHLDLSSG 392 (417)
Q Consensus 340 ~~~~~~~~~v~nI~~~ni~~~~~~~-----~~~~i~~~~~~~~~~i~~~nv~i~~~~~ 392 (417)
....+.++||.-+||+-..+.. ..+-+-+ |+|+.++||.+....|
T Consensus 266 ---ngkhfvirnvkaknitpdfskkagidnatvaiyg-----cdnfvidni~mvnsag 315 (464)
T PRK10123 266 ---NGKHFVIRNIKAKNITPDFSKKAGIDNATVAIYG-----CDNFVIDNIEMINSAG 315 (464)
T ss_pred ---CCcEEEEEeeeccccCCCchhhcCCCcceEEEEc-----ccceEEeccccccccc
Confidence 2356678899999988665432 2333434 8999999999765543
No 102
>PLN02933 Probable pectinesterase/pectinesterase inhibitor
Probab=89.96 E-value=6.9 Score=40.50 Aligned_cols=115 Identities=10% Similarity=0.106 Sum_probs=75.1
Q ss_pred EeceecEEEEeEEEECCCCCCCCCeEEee-cceeEEEEeeEEecCCceEEecCCceeEEEEeeEEcCCceEEEcccccCC
Q 047315 196 LVECKNFRGSKIKISAPANSPNTDGIHIE-RSSSVHVSRSHIGTGDDCISVGQGNSEVTIASITCGPGHGISVGSLGRYP 274 (417)
Q Consensus 196 ~~~~~~v~i~n~~i~~~~~~~~~DGi~~~-~s~nv~I~n~~i~~gdD~i~i~s~s~nv~i~n~~~~~~~gi~igs~~~~~ 274 (417)
....+++..+|++|.+.........+.+. .+....+.+|.|.+..|-+...+ ..-.+++|++.+.-.+-+|..
T Consensus 301 ~v~a~~F~a~nitf~Ntag~~~~QAVAlrv~~Dra~fy~C~f~G~QDTLy~~~--~Rqyy~~C~IeGtVDFIFG~a---- 374 (530)
T PLN02933 301 GVKGKGFIAKDISFVNYAGPAKHQAVALRSGSDHSAFYRCEFDGYQDTLYVHS--AKQFYRECDIYGTIDFIFGNA---- 374 (530)
T ss_pred EEECCCEEEEeeEEEECCCCCCCceEEEEEcCCcEEEEEeEEEecccccccCC--CceEEEeeEEecccceeccCc----
Confidence 34567899999999985432222334442 36889999999999999887765 356999999988777877653
Q ss_pred CCCcEEEEEEEeeEEecCc----eEEEEEEecCCCCCeeEEeEEEEeEEEecC
Q 047315 275 NEGDVRGLVVRDSTMTGTM----NGVRIKTWANSPGSSAATNMTFENIIMNNV 323 (417)
Q Consensus 275 ~~~~v~ni~i~n~~~~~~~----~gi~i~~~~~~~~g~~i~ni~~~ni~~~~~ 323 (417)
...|+||++.... ..-.|.......... -..+.|.|+++...
T Consensus 375 ------~avFq~C~i~~~~~~~~~~~~iTAq~r~~~~~-~tGfvf~~C~it~~ 420 (530)
T PLN02933 375 ------AVVFQNCSLYARKPNPNHKIAFTAQSRNQSDQ-PTGISIISSRILAA 420 (530)
T ss_pred ------eEEEeccEEEEeccCCCCceEEEecCCCCCCC-CceEEEEeeEEecC
Confidence 3678888886432 112232221111111 35788999999864
No 103
>PLN03043 Probable pectinesterase/pectinesterase inhibitor; Provisional
Probab=89.76 E-value=7.5 Score=40.50 Aligned_cols=116 Identities=8% Similarity=0.084 Sum_probs=77.2
Q ss_pred EEeceecEEEEeEEEECCCCCCCCCeEEee-cceeEEEEeeEEecCCceEEecCCceeEEEEeeEEcCCceEEEcccccC
Q 047315 195 ALVECKNFRGSKIKISAPANSPNTDGIHIE-RSSSVHVSRSHIGTGDDCISVGQGNSEVTIASITCGPGHGISVGSLGRY 273 (417)
Q Consensus 195 ~~~~~~~v~i~n~~i~~~~~~~~~DGi~~~-~s~nv~I~n~~i~~gdD~i~i~s~s~nv~i~n~~~~~~~gi~igs~~~~ 273 (417)
.....+++..+|++|.+.........+.+. .+....+.+|.|.+..|-+...+ ..-.++||++.+.-.+-+|..
T Consensus 308 ~~v~~~~F~a~~it~~Ntag~~~~QAvAlrv~~D~~~f~~C~~~gyQDTLy~~~--~rq~y~~c~I~GtVDFIFG~a--- 382 (538)
T PLN03043 308 FAVSGERFVAVDVTFRNTAGPEKHQAVALRNNADLSTFYRCSFEGYQDTLYVHS--LRQFYRECDIYGTVDFIFGNA--- 382 (538)
T ss_pred EEEECCCEEEEeeEEEECCCCCCCceEEEEEcCCcEEEEeeEEeccCcccccCC--CcEEEEeeEEeeccceEeecc---
Confidence 344568899999999985432223344442 35789999999999999888765 357999999988777878654
Q ss_pred CCCCcEEEEEEEeeEEecCc----eEEEEEEecCCCC-CeeEEeEEEEeEEEecCC
Q 047315 274 PNEGDVRGLVVRDSTMTGTM----NGVRIKTWANSPG-SSAATNMTFENIIMNNVS 324 (417)
Q Consensus 274 ~~~~~v~ni~i~n~~~~~~~----~gi~i~~~~~~~~-g~~i~ni~~~ni~~~~~~ 324 (417)
...|+||++.... ..-.|.. .++.. .. -..+.|.|+++....
T Consensus 383 -------~avfq~c~i~~r~~~~~~~~~iTA-~~r~~~~~-~tG~~~~~c~i~~~~ 429 (538)
T PLN03043 383 -------AAIFQNCNLYARKPMANQKNAFTA-QGRTDPNQ-NTGISIINCTIEAAP 429 (538)
T ss_pred -------eeeeeccEEEEecCCCCCCceEEe-cCCCCCCC-CceEEEEecEEecCC
Confidence 3688888886521 1112222 22111 11 367889999998643
No 104
>PLN02304 probable pectinesterase
Probab=89.69 E-value=10 Score=37.43 Aligned_cols=114 Identities=11% Similarity=0.091 Sum_probs=73.4
Q ss_pred eceecEEEEeEEEECCCCC-----CCCCeEEee-cceeEEEEeeEEecCCceEEecCCceeEEEEeeEEcCCceEEEccc
Q 047315 197 VECKNFRGSKIKISAPANS-----PNTDGIHIE-RSSSVHVSRSHIGTGDDCISVGQGNSEVTIASITCGPGHGISVGSL 270 (417)
Q Consensus 197 ~~~~~v~i~n~~i~~~~~~-----~~~DGi~~~-~s~nv~I~n~~i~~gdD~i~i~s~s~nv~i~n~~~~~~~gi~igs~ 270 (417)
...+++..+|++|.+.... .......+. .+....+.+|.|.+..|-+.... ..-.++||++.+.-.+-+|..
T Consensus 159 v~a~~F~a~nITf~Nta~~~~~g~~~~QAVAL~v~gDra~fy~C~f~G~QDTLy~~~--gR~Yf~~CyIeG~VDFIFG~g 236 (379)
T PLN02304 159 VFASNFIAKNISFMNVAPIPKPGDVGAQAVAIRIAGDQAAFWGCGFFGAQDTLHDDR--GRHYFKDCYIQGSIDFIFGDA 236 (379)
T ss_pred EECCCeEEEeeEEEecCCCCCCCCCCccEEEEEecCCcEEEEeceEecccceeEeCC--CCEEEEeeEEcccccEEeccc
Confidence 3457888999999985311 111223332 36899999999999999887654 468899999988777878663
Q ss_pred ccCCCCCcEEEEEEEeeEEecCceE---------EEEEEecCCCCCeeEEeEEEEeEEEecC
Q 047315 271 GRYPNEGDVRGLVVRDSTMTGTMNG---------VRIKTWANSPGSSAATNMTFENIIMNNV 323 (417)
Q Consensus 271 ~~~~~~~~v~ni~i~n~~~~~~~~g---------i~i~~~~~~~~g~~i~ni~~~ni~~~~~ 323 (417)
...|++|++...... -.|.......... -....|.|+++...
T Consensus 237 ----------~A~Fe~C~I~s~~~~~~~g~~~~~G~ITA~~Rt~~~~-~~GfvF~~C~itg~ 287 (379)
T PLN02304 237 ----------RSLYENCRLISMANPVPPGSKSINGAVTAHGRTSKDE-NTGFSFVNCTIGGT 287 (379)
T ss_pred ----------eEEEEccEEEEecCCcccccccCceEEEecCCCCCCC-CceEEEECCEEccC
Confidence 368888888753211 1232221110111 35678999998764
No 105
>PF08480 Disaggr_assoc: Disaggregatase related; InterPro: IPR013687 The members of this family are disaggregatases and several hypothetical proteins of the archaeal genus Methanosarcina. Disaggregatases cause aggregates to separate into single cells [] and contain parallel beta-helix repeats. Also see IPR010671 from INTERPRO.
Probab=89.65 E-value=4.9 Score=35.20 Aligned_cols=72 Identities=19% Similarity=0.301 Sum_probs=31.1
Q ss_pred eEEEEeeEEcCCc--eEEE-cccccCCCCCcEEEEEEEeeEEecCceEEEEEEecCC--CCCeeEEeEEEEeEEEecCCc
Q 047315 251 EVTIASITCGPGH--GISV-GSLGRYPNEGDVRGLVVRDSTMTGTMNGVRIKTWANS--PGSSAATNMTFENIIMNNVSN 325 (417)
Q Consensus 251 nv~i~n~~~~~~~--gi~i-gs~~~~~~~~~v~ni~i~n~~~~~~~~gi~i~~~~~~--~~g~~i~ni~~~ni~~~~~~~ 325 (417)
+|+|-|+.+++.. ||-+ |..+.+ .....+||+|+++.|.++..--.+. |.+. ..|+ .|.++||..++++..
T Consensus 3 dIEIYnN~I~~T~g~GIWl~gy~~~y-sk~~a~nVhIhhN~fY~tGtn~~~~-wvGGIv~sGF--~ntlIENNVfDG~y~ 78 (198)
T PF08480_consen 3 DIEIYNNTIYNTYGPGIWLFGYDGSY-SKDSAKNVHIHHNIFYDTGTNPNID-WVGGIVTSGF--YNTLIENNVFDGVYH 78 (198)
T ss_pred ceEEecceeecccCceEEEEecCCCC-CccccccEEEECcEeecCCcCCCCc-eeeeEEeccc--cccEEEeeeeccccc
Confidence 4555566555432 4333 222221 2233446666666665543211110 0000 0232 555666666666554
Q ss_pred c
Q 047315 326 P 326 (417)
Q Consensus 326 ~ 326 (417)
+
T Consensus 79 a 79 (198)
T PF08480_consen 79 A 79 (198)
T ss_pred c
Confidence 3
No 106
>PLN02698 Probable pectinesterase/pectinesterase inhibitor
Probab=89.58 E-value=6.5 Score=40.53 Aligned_cols=142 Identities=13% Similarity=0.068 Sum_probs=75.5
Q ss_pred EEEEeecceEEEeeEEecCCcc----eEEEe-ceecEEEEeEEEECCCCCCCCCeEEeecceeEEEEeeEEecCCceEEe
Q 047315 171 VKFVAMKKTIVRRITSVNSKSF----HIALV-ECKNFRGSKIKISAPANSPNTDGIHIERSSSVHVSRSHIGTGDDCISV 245 (417)
Q Consensus 171 i~~~~~~nv~I~~v~i~n~~~~----~i~~~-~~~~v~i~n~~i~~~~~~~~~DGi~~~~s~nv~I~n~~i~~gdD~i~i 245 (417)
-.....+++..+|++|.|.... .+-+. .++...+.+|.|.+.. |-+.... ..-.+++|.|.+.=|-|-
T Consensus 264 T~~v~~~~F~a~nitf~Ntag~~~~QAvAl~v~~D~~~fy~c~~~G~Q-----DTLy~~~-~rqyy~~C~I~G~vDFIF- 336 (497)
T PLN02698 264 TFTITGDGFIARDIGFKNAAGPKGEQAIALSITSDHSVLYRCSIAGYQ-----DTLYAAA-LRQFYRECDIYGTIDFIF- 336 (497)
T ss_pred eEEEECCCeEEEeeEEEECCCCCCCceEEEEecCCcEEEEcceeeccc-----chheeCC-CcEEEEeeEEEeccceEe-
Confidence 3445678888888888887432 23222 4677777788777633 3333333 345777788776555443
Q ss_pred cCCceeEEEEeeEEcCC---ce--EEEcccccCCCCCcEEEEEEEeeEEecCceEE----EEEEecCCCCCeeEEeEEEE
Q 047315 246 GQGNSEVTIASITCGPG---HG--ISVGSLGRYPNEGDVRGLVVRDSTMTGTMNGV----RIKTWANSPGSSAATNMTFE 316 (417)
Q Consensus 246 ~s~s~nv~i~n~~~~~~---~g--i~igs~~~~~~~~~v~ni~i~n~~~~~~~~gi----~i~~~~~~~~g~~i~ni~~~ 316 (417)
|.....++||++..- .+ -.|-..++ .....-..+.|.||++....... ..+.+-|+|..- -..++|.
T Consensus 337 --G~a~avf~~C~i~~~~~~~~~~~~iTAq~r-~~~~~~~G~vf~~c~i~~~~~~~~~~~~~~~yLGRPW~~-ysr~vf~ 412 (497)
T PLN02698 337 --GNAAAVFQNCYLFLRRPHGKSYNVILANGR-SDPGQNTGFSLQSCRIRTSSDFSPVKHSYSSYLGRPWKK-YSRAIVM 412 (497)
T ss_pred --cccceeecccEEEEecCCCCCceEEEecCC-CCCCCCceEEEEeeEEecCCcccccccccceeccCCCCC-CceEEEE
Confidence 234677777777421 11 11211111 01123356777778777654211 123333443332 3666677
Q ss_pred eEEEecC
Q 047315 317 NIIMNNV 323 (417)
Q Consensus 317 ni~~~~~ 323 (417)
+..+.+.
T Consensus 413 ~s~l~~~ 419 (497)
T PLN02698 413 ESYIDDA 419 (497)
T ss_pred ecccCCc
Confidence 6666653
No 107
>PLN02488 probable pectinesterase/pectinesterase inhibitor
Probab=89.56 E-value=10 Score=38.85 Aligned_cols=114 Identities=9% Similarity=0.076 Sum_probs=77.1
Q ss_pred eceecEEEEeEEEECCCCCCCCCeEEee-cceeEEEEeeEEecCCceEEecCCceeEEEEeeEEcCCceEEEcccccCCC
Q 047315 197 VECKNFRGSKIKISAPANSPNTDGIHIE-RSSSVHVSRSHIGTGDDCISVGQGNSEVTIASITCGPGHGISVGSLGRYPN 275 (417)
Q Consensus 197 ~~~~~v~i~n~~i~~~~~~~~~DGi~~~-~s~nv~I~n~~i~~gdD~i~i~s~s~nv~i~n~~~~~~~gi~igs~~~~~~ 275 (417)
...+++..+|++|.+.........+.+. .+....+.+|.|.+..|-+...+ ..-.+++|++.+.-.+-+|..
T Consensus 281 v~g~gF~A~nitf~Ntag~~~~QAVALrv~~Dra~Fy~C~f~GyQDTLy~~~--~RqyyrdC~I~GtVDFIFG~a----- 353 (509)
T PLN02488 281 SNGDGFIGIDMCFRNTAGPAKGPAVALRVSGDMSVIYRCRIEGYQDALYPHR--DRQFYRECFITGTVDFICGNA----- 353 (509)
T ss_pred EEcCCeEEEeeEEEECCCCCCCceEEEEecCCcEEEEcceeeccCcceeeCC--CCEEEEeeEEeeccceEecce-----
Confidence 3457888999999985432223344442 36889999999999999888764 467999999988777877654
Q ss_pred CCcEEEEEEEeeEEecCce----EEEEEEecCCC-CCeeEEeEEEEeEEEecCC
Q 047315 276 EGDVRGLVVRDSTMTGTMN----GVRIKTWANSP-GSSAATNMTFENIIMNNVS 324 (417)
Q Consensus 276 ~~~v~ni~i~n~~~~~~~~----gi~i~~~~~~~-~g~~i~ni~~~ni~~~~~~ 324 (417)
.+.|+||++..... .-.|.. .++. ... -..+.|.|+++....
T Consensus 354 -----~avFq~C~I~sr~~~~~~~~~ITA-q~R~~~~~-~tGfvf~~C~it~~~ 400 (509)
T PLN02488 354 -----AAVFQFCQIVARQPMMGQSNVITA-QSRESKDD-NSGFSIQKCNITASS 400 (509)
T ss_pred -----EEEEEccEEEEecCCCCCCEEEEe-CCCCCCCC-CcEEEEEeeEEecCC
Confidence 47888998875321 123432 2221 111 367899999998754
No 108
>PLN02416 probable pectinesterase/pectinesterase inhibitor
Probab=89.42 E-value=7.5 Score=40.49 Aligned_cols=115 Identities=16% Similarity=0.165 Sum_probs=75.0
Q ss_pred EeceecEEEEeEEEECCCCCCCCCeEEee-cceeEEEEeeEEecCCceEEecCCceeEEEEeeEEcCCceEEEcccccCC
Q 047315 196 LVECKNFRGSKIKISAPANSPNTDGIHIE-RSSSVHVSRSHIGTGDDCISVGQGNSEVTIASITCGPGHGISVGSLGRYP 274 (417)
Q Consensus 196 ~~~~~~v~i~n~~i~~~~~~~~~DGi~~~-~s~nv~I~n~~i~~gdD~i~i~s~s~nv~i~n~~~~~~~gi~igs~~~~~ 274 (417)
....+++..+|++|.+.........+.+. .+..+.+.+|.|.+..|-+...+ ..-.+++|++.+.-++-+|..
T Consensus 313 ~v~~~~F~a~nitf~Ntag~~~~QAVAl~v~~D~~~fy~c~~~G~QDTLy~~~--~Rqyy~~C~I~GtVDFIFG~a---- 386 (541)
T PLN02416 313 AVSGEGFLARDITIENTAGPEKHQAVALRVNADLVALYRCTINGYQDTLYVHS--FRQFYRECDIYGTIDYIFGNA---- 386 (541)
T ss_pred EEECCCeEEEeeEEEECCCCCCCceEEEEEcCccEEEEcceEecccchhccCC--CceEEEeeEEeeccceeeccc----
Confidence 34567899999999985432222333332 35889999999999999887664 456999999988777777653
Q ss_pred CCCcEEEEEEEeeEEecCce--E--EEEEEecCCCCCeeEEeEEEEeEEEecC
Q 047315 275 NEGDVRGLVVRDSTMTGTMN--G--VRIKTWANSPGSSAATNMTFENIIMNNV 323 (417)
Q Consensus 275 ~~~~v~ni~i~n~~~~~~~~--g--i~i~~~~~~~~g~~i~ni~~~ni~~~~~ 323 (417)
...|+||++..... | -.| +..++..+..-..+.|.|+++...
T Consensus 387 ------~avfq~c~i~~~~~~~~~~~~i-TA~~r~~~~~~~G~vf~~c~i~~~ 432 (541)
T PLN02416 387 ------AVVFQACNIVSKMPMPGQFTVI-TAQSRDTPDEDTGISIQNCSILAT 432 (541)
T ss_pred ------eEEEeccEEEEecCCCCCceEE-ECCCCCCCCCCCEEEEEeeEEecC
Confidence 46788888865321 1 123 222211111036788999999764
No 109
>PF09251 PhageP22-tail: Salmonella phage P22 tail-spike; InterPro: IPR015331 This entry is represented by the Bacteriophage P22, Gp9, tailspike protein (TSP). The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. The TSP C-terminal domain adopts a structure that consists of a single-stranded right-handed beta-helix, which in turn is made of parallel beta-strands and short turns. They are required for recognition of the 0-antigenic repeating units of the cell surface, and for subsequent infection of the bacterial cell by the phage []. ; PDB: 1QA3_A 1QRB_A 2XC1_C 1QA2_A 1TYX_A 2VFQ_A 2VFO_A 1TYU_A 2VFN_A 1QA1_A ....
Probab=89.37 E-value=24 Score=35.06 Aligned_cols=57 Identities=28% Similarity=0.427 Sum_probs=31.1
Q ss_pred eeEEEEeeEEcCCceEEEcccccCCCCCcEEEEEEEeeEEecCceEEEEEEecCCCCCeeEEeEEEEeEEEecC
Q 047315 250 SEVTIASITCGPGHGISVGSLGRYPNEGDVRGLVVRDSTMTGTMNGVRIKTWANSPGSSAATNMTFENIIMNNV 323 (417)
Q Consensus 250 ~nv~i~n~~~~~~~gi~igs~~~~~~~~~v~ni~i~n~~~~~~~~gi~i~~~~~~~~g~~i~ni~~~ni~~~~~ 323 (417)
.|-.|+|....++.|+.++-.| ..+.++||++++|. ..|+.+.. .|=.|+||++-+.
T Consensus 311 tnHiidNi~~~~~lGVG~~~DG---~~~yvsni~~~d~~----g~G~~~~~----------~~~~ftNitvId~ 367 (549)
T PF09251_consen 311 TNHIIDNILVRGSLGVGIGMDG---KGGYVSNITVQDCA----GAGIFIRG----------TNKVFTNITVIDT 367 (549)
T ss_dssp ---EEEEEEEES-SSESCEEEC---CS-EEEEEEEES-S----SESEEEEC----------CS-EEEEEEEES-
T ss_pred hhhhhhhhheeccceeeeeecC---CCceEeeEEeeccc----CCceEEee----------cCCceeeeEEEec
Confidence 5778888888888887775544 44667777666653 23555532 3445667766554
No 110
>PLN02698 Probable pectinesterase/pectinesterase inhibitor
Probab=89.33 E-value=8.4 Score=39.72 Aligned_cols=115 Identities=11% Similarity=0.057 Sum_probs=76.2
Q ss_pred EeceecEEEEeEEEECCCCCCCCCeEEee-cceeEEEEeeEEecCCceEEecCCceeEEEEeeEEcCCceEEEcccccCC
Q 047315 196 LVECKNFRGSKIKISAPANSPNTDGIHIE-RSSSVHVSRSHIGTGDDCISVGQGNSEVTIASITCGPGHGISVGSLGRYP 274 (417)
Q Consensus 196 ~~~~~~v~i~n~~i~~~~~~~~~DGi~~~-~s~nv~I~n~~i~~gdD~i~i~s~s~nv~i~n~~~~~~~gi~igs~~~~~ 274 (417)
....+++..+|++|++.........+.+. .+.+..+.+|.|.+..|-+...+ ..-.+++|++.+.-.+-+|..
T Consensus 266 ~v~~~~F~a~nitf~Ntag~~~~QAvAl~v~~D~~~fy~c~~~G~QDTLy~~~--~rqyy~~C~I~G~vDFIFG~a---- 339 (497)
T PLN02698 266 TITGDGFIARDIGFKNAAGPKGEQAIALSITSDHSVLYRCSIAGYQDTLYAAA--LRQFYRECDIYGTIDFIFGNA---- 339 (497)
T ss_pred EEECCCeEEEeeEEEECCCCCCCceEEEEecCCcEEEEcceeecccchheeCC--CcEEEEeeEEEeccceEeccc----
Confidence 34667899999999985432222333332 35899999999999999888765 346899999987777877653
Q ss_pred CCCcEEEEEEEeeEEecCce--E--EEEEEecCC-CCCeeEEeEEEEeEEEecCC
Q 047315 275 NEGDVRGLVVRDSTMTGTMN--G--VRIKTWANS-PGSSAATNMTFENIIMNNVS 324 (417)
Q Consensus 275 ~~~~v~ni~i~n~~~~~~~~--g--i~i~~~~~~-~~g~~i~ni~~~ni~~~~~~ 324 (417)
...|+||++..... + -.|. ..++ .... -..+.|.|+++....
T Consensus 340 ------~avf~~C~i~~~~~~~~~~~~iT-Aq~r~~~~~-~~G~vf~~c~i~~~~ 386 (497)
T PLN02698 340 ------AAVFQNCYLFLRRPHGKSYNVIL-ANGRSDPGQ-NTGFSLQSCRIRTSS 386 (497)
T ss_pred ------ceeecccEEEEecCCCCCceEEE-ecCCCCCCC-CceEEEEeeEEecCC
Confidence 35788888864221 1 1232 2221 1112 367889999998754
No 111
>PLN02176 putative pectinesterase
Probab=89.25 E-value=9.5 Score=37.22 Aligned_cols=111 Identities=14% Similarity=0.115 Sum_probs=73.9
Q ss_pred ceecEEEEeEEEECCCCC--------CCCCeEEeecceeEEEEeeEEecCCceEEecCCceeEEEEeeEEcCCceEEEcc
Q 047315 198 ECKNFRGSKIKISAPANS--------PNTDGIHIERSSSVHVSRSHIGTGDDCISVGQGNSEVTIASITCGPGHGISVGS 269 (417)
Q Consensus 198 ~~~~v~i~n~~i~~~~~~--------~~~DGi~~~~s~nv~I~n~~i~~gdD~i~i~s~s~nv~i~n~~~~~~~gi~igs 269 (417)
.++++..+|++|.+.... ...-.+.+. +....+.+|.|.+..|-+.... ..-.+++|++.+.-++-+|.
T Consensus 120 ~a~~F~a~nlT~~Nt~~~~~~~~~~~~QAVAl~v~-gDr~~f~~C~f~G~QDTLy~~~--gRqyf~~CyIeG~VDFIFG~ 196 (340)
T PLN02176 120 YASNIIITGITFKNTYNIASNSSRPTKPAVAARML-GDKYAIIDSSFDGFQDTLFDGK--GRHYYKRCVISGGIDFIFGY 196 (340)
T ss_pred ECCCEEEEeeEEEeCCCccCCCCCCccceEEEEec-CccEEEEccEEecccceeEeCC--cCEEEEecEEEecccEEecC
Confidence 568899999999985321 112223333 5889999999999999887654 47899999998877777765
Q ss_pred cccCCCCCcEEEEEEEeeEEecCc-----e--EEEEEEecCCCC-CeeEEeEEEEeEEEecC
Q 047315 270 LGRYPNEGDVRGLVVRDSTMTGTM-----N--GVRIKTWANSPG-SSAATNMTFENIIMNNV 323 (417)
Q Consensus 270 ~~~~~~~~~v~ni~i~n~~~~~~~-----~--gi~i~~~~~~~~-g~~i~ni~~~ni~~~~~ 323 (417)
. ...|+||++.... . .-.|.. .++.. .. -....|.|+++...
T Consensus 197 a----------~a~Fe~C~I~s~~~~~~~~~~~g~ITA-~~r~~~~~-~~GfvF~~C~itg~ 246 (340)
T PLN02176 197 A----------QSIFEGCTLKLTLGIYPPNEPYGTITA-QGRPSPSD-KGGFVFKDCTVTGV 246 (340)
T ss_pred c----------eEEEeccEEEEecccCCCCCCcEEEEe-CCCCCCCC-CcEEEEECCEEccC
Confidence 3 4788888887431 1 112222 22111 11 35788999999864
No 112
>PLN02301 pectinesterase/pectinesterase inhibitor
Probab=89.21 E-value=8.2 Score=40.22 Aligned_cols=115 Identities=9% Similarity=0.091 Sum_probs=75.9
Q ss_pred EeceecEEEEeEEEECCCCCCCCCeEEee-cceeEEEEeeEEecCCceEEecCCceeEEEEeeEEcCCceEEEcccccCC
Q 047315 196 LVECKNFRGSKIKISAPANSPNTDGIHIE-RSSSVHVSRSHIGTGDDCISVGQGNSEVTIASITCGPGHGISVGSLGRYP 274 (417)
Q Consensus 196 ~~~~~~v~i~n~~i~~~~~~~~~DGi~~~-~s~nv~I~n~~i~~gdD~i~i~s~s~nv~i~n~~~~~~~gi~igs~~~~~ 274 (417)
....+++..+|++|.+.........+.+. .+....+.+|.|.+..|-+...+ ..-.+++|++.+.-++-+|..
T Consensus 319 ~v~~~~F~a~nitf~Ntag~~~~QAVAlrv~~D~~~fy~C~~~G~QDTLy~~~--~Rqyy~~C~I~GtVDFIFG~a---- 392 (548)
T PLN02301 319 AAVGDGFIAQDIWFQNTAGPEKHQAVALRVSADQAVINRCRIDAYQDTLYAHS--LRQFYRDSYITGTVDFIFGNA---- 392 (548)
T ss_pred EEECCceEEEeeEEEECCCCCCCceEEEEecCCcEEEEeeeeeeccccceecC--CcEEEEeeEEEeccceecccc----
Confidence 34567899999999985422222333332 35889999999999999888765 356999999988777777653
Q ss_pred CCCcEEEEEEEeeEEecCce----EEEEEEecCC-CCCeeEEeEEEEeEEEecCC
Q 047315 275 NEGDVRGLVVRDSTMTGTMN----GVRIKTWANS-PGSSAATNMTFENIIMNNVS 324 (417)
Q Consensus 275 ~~~~v~ni~i~n~~~~~~~~----gi~i~~~~~~-~~g~~i~ni~~~ni~~~~~~ 324 (417)
...|+||++.-... .-.|.. .++ .... -..+.|.|+++....
T Consensus 393 ------~avfq~c~i~~~~~~~~~~~~iTA-qgr~~~~~-~tG~vf~~c~i~~~~ 439 (548)
T PLN02301 393 ------AVVFQNCKIVARKPMAGQKNMVTA-QGRTDPNQ-NTGISIQKCDIIASS 439 (548)
T ss_pred ------eeEEeccEEEEecCCCCCCceEEe-cCCCCCCC-CCEEEEEeeEEecCc
Confidence 46888888865321 112322 221 1112 367899999998653
No 113
>PLN02468 putative pectinesterase/pectinesterase inhibitor
Probab=88.97 E-value=6.4 Score=41.23 Aligned_cols=114 Identities=10% Similarity=0.077 Sum_probs=75.7
Q ss_pred eceecEEEEeEEEECCCCCCCCCeEEee-cceeEEEEeeEEecCCceEEecCCceeEEEEeeEEcCCceEEEcccccCCC
Q 047315 197 VECKNFRGSKIKISAPANSPNTDGIHIE-RSSSVHVSRSHIGTGDDCISVGQGNSEVTIASITCGPGHGISVGSLGRYPN 275 (417)
Q Consensus 197 ~~~~~v~i~n~~i~~~~~~~~~DGi~~~-~s~nv~I~n~~i~~gdD~i~i~s~s~nv~i~n~~~~~~~gi~igs~~~~~~ 275 (417)
...+++..+|++|.+.........+.+. .+....+.+|.|.+..|-+...+ ..-.+++|++.+.-.+-+|..
T Consensus 342 v~~~~f~a~~itf~Ntag~~~~QAVAl~v~~D~~~fy~c~~~G~QDTLy~~~--~rq~y~~C~I~GtvDFIFG~a----- 414 (565)
T PLN02468 342 VFGKGFMARDMGFRNTAGPIKHQAVALMSSADLSVFYRCTMDAFQDTLYAHA--QRQFYRECNIYGTVDFIFGNS----- 414 (565)
T ss_pred EECCCeEEEEEEEEeCCCCCCCceEEEEEcCCcEEEEEeEEEeccchhccCC--CceEEEeeEEecccceeeccc-----
Confidence 3557899999999985432222333332 35889999999999999888765 356799999988777877654
Q ss_pred CCcEEEEEEEeeEEecCce----EEEEEEecCC-CCCeeEEeEEEEeEEEecCC
Q 047315 276 EGDVRGLVVRDSTMTGTMN----GVRIKTWANS-PGSSAATNMTFENIIMNNVS 324 (417)
Q Consensus 276 ~~~v~ni~i~n~~~~~~~~----gi~i~~~~~~-~~g~~i~ni~~~ni~~~~~~ 324 (417)
.+.|+||++..... .-.|.. .++ .... -..+.|.|+++....
T Consensus 415 -----~avfq~c~i~~~~~~~~~~~~iTA-~~r~~~~~-~~G~vf~~c~i~~~~ 461 (565)
T PLN02468 415 -----AVVFQNCNILPRRPMKGQQNTITA-QGRTDPNQ-NTGISIQNCTILPLG 461 (565)
T ss_pred -----eEEEeccEEEEecCCCCCCceEEe-cCCCCCCC-CceEEEEccEEecCC
Confidence 47888888864211 122322 221 1112 367899999998753
No 114
>PLN02745 Putative pectinesterase/pectinesterase inhibitor
Probab=88.82 E-value=9.8 Score=40.14 Aligned_cols=113 Identities=8% Similarity=0.042 Sum_probs=75.2
Q ss_pred eceecEEEEeEEEECCCCCC--CCCeEEeecceeEEEEeeEEecCCceEEecCCceeEEEEeeEEcCCceEEEcccccCC
Q 047315 197 VECKNFRGSKIKISAPANSP--NTDGIHIERSSSVHVSRSHIGTGDDCISVGQGNSEVTIASITCGPGHGISVGSLGRYP 274 (417)
Q Consensus 197 ~~~~~v~i~n~~i~~~~~~~--~~DGi~~~~s~nv~I~n~~i~~gdD~i~i~s~s~nv~i~n~~~~~~~gi~igs~~~~~ 274 (417)
...+++..+|++|.+..... ..-.+.+. +....+.+|.|.+..|-+...+ ..-.+++|++.+.-.+-+|..
T Consensus 369 v~~~~F~a~nitf~Ntag~~~~QAVAl~v~-~Dr~~f~~c~~~G~QDTLy~~~--~Rqyy~~C~I~GtVDFIFG~a---- 441 (596)
T PLN02745 369 ALGEGFMAKSMGFRNTAGPEKHQAVAIRVQ-SDRSIFLNCRFEGYQDTLYAQT--HRQFYRSCVITGTIDFIFGDA---- 441 (596)
T ss_pred EEcCCEEEEeeEEEECCCCCCCceEEEEEc-CCcEEEEeeEEeecccccccCC--CcEEEEeeEEEeeccEEecce----
Confidence 35678999999999854211 22233333 5889999999999999887664 467999999988777777653
Q ss_pred CCCcEEEEEEEeeEEecCc----eEEEEEEecCCC-CCeeEEeEEEEeEEEecCC
Q 047315 275 NEGDVRGLVVRDSTMTGTM----NGVRIKTWANSP-GSSAATNMTFENIIMNNVS 324 (417)
Q Consensus 275 ~~~~v~ni~i~n~~~~~~~----~gi~i~~~~~~~-~g~~i~ni~~~ni~~~~~~ 324 (417)
...|+||++.-.. ..-.|.. .++. ... -..+.|.|+++....
T Consensus 442 ------~avf~~C~i~~~~~~~~~~~~iTA-q~r~~~~~-~~Gfvf~~c~i~~~~ 488 (596)
T PLN02745 442 ------AAIFQNCLIFVRKPLPNQQNTVTA-QGRVDKFE-TTGIVLQNCRIAPDE 488 (596)
T ss_pred ------eEEEEecEEEEecCCCCCCceEEe-cCCCCCCC-CceEEEEeeEEecCc
Confidence 4688888886431 1112322 2211 111 367899999998753
No 115
>PLN02484 probable pectinesterase/pectinesterase inhibitor
Probab=88.73 E-value=8.9 Score=40.39 Aligned_cols=115 Identities=11% Similarity=0.105 Sum_probs=75.4
Q ss_pred EeceecEEEEeEEEECCCCCCCCCeEEee-cceeEEEEeeEEecCCceEEecCCceeEEEEeeEEcCCceEEEcccccCC
Q 047315 196 LVECKNFRGSKIKISAPANSPNTDGIHIE-RSSSVHVSRSHIGTGDDCISVGQGNSEVTIASITCGPGHGISVGSLGRYP 274 (417)
Q Consensus 196 ~~~~~~v~i~n~~i~~~~~~~~~DGi~~~-~s~nv~I~n~~i~~gdD~i~i~s~s~nv~i~n~~~~~~~gi~igs~~~~~ 274 (417)
....+++..+|++|.+.........+.+. .+....+.+|.|.+..|-+...+ ..-.+++|++.+.-.+-+|..
T Consensus 356 ~v~~~~F~a~~itf~Ntag~~~~QAvAlrv~~D~~~fy~C~~~G~QDTLy~~~--~Rqyy~~C~I~GtVDFIFG~a---- 429 (587)
T PLN02484 356 AATGAGFIARDMTFENWAGPAKHQAVALRVGADHAVVYRCNIIGYQDTLYVHS--NRQFFRECDIYGTVDFIFGNA---- 429 (587)
T ss_pred EEEcCCEEEEeeEEEECCCCCCCceEEEEecCCcEEEEeeeEeccCcccccCC--CcEEEEecEEEeccceecccc----
Confidence 34567889999999985432222333332 35889999999999999887765 356899999987777777653
Q ss_pred CCCcEEEEEEEeeEEecCc----eEEEEEEecCCC-CCeeEEeEEEEeEEEecCC
Q 047315 275 NEGDVRGLVVRDSTMTGTM----NGVRIKTWANSP-GSSAATNMTFENIIMNNVS 324 (417)
Q Consensus 275 ~~~~v~ni~i~n~~~~~~~----~gi~i~~~~~~~-~g~~i~ni~~~ni~~~~~~ 324 (417)
...|+||++.... ..-.|.. .++. ... -..+.|.|+++....
T Consensus 430 ------~avfq~C~i~~~~~~~~~~~~ITA-q~r~~~~~-~~G~vf~~c~i~~~~ 476 (587)
T PLN02484 430 ------AVVLQNCSIYARKPMAQQKNTITA-QNRKDPNQ-NTGISIHACRILAAS 476 (587)
T ss_pred ------eeEEeccEEEEecCCCCCceEEEe-cCCCCCCC-CcEEEEEeeEEecCC
Confidence 3688888886421 1122322 2211 112 367899999997643
No 116
>PLN02990 Probable pectinesterase/pectinesterase inhibitor
Probab=88.62 E-value=9.4 Score=40.05 Aligned_cols=114 Identities=11% Similarity=0.164 Sum_probs=75.4
Q ss_pred eceecEEEEeEEEECCCCCCCCCeEEee-cceeEEEEeeEEecCCceEEecCCceeEEEEeeEEcCCceEEEcccccCCC
Q 047315 197 VECKNFRGSKIKISAPANSPNTDGIHIE-RSSSVHVSRSHIGTGDDCISVGQGNSEVTIASITCGPGHGISVGSLGRYPN 275 (417)
Q Consensus 197 ~~~~~v~i~n~~i~~~~~~~~~DGi~~~-~s~nv~I~n~~i~~gdD~i~i~s~s~nv~i~n~~~~~~~gi~igs~~~~~~ 275 (417)
...+++..+|++|.+.........+.+. .+....+.+|.|.+..|-+...+ ..-.+++|++.+.-.+-+|..
T Consensus 344 v~~~~F~a~nitf~Ntag~~~~QAVAlrv~~D~~~f~~c~~~G~QDTLy~~~--~Rqyy~~C~I~GtVDFIFG~a----- 416 (572)
T PLN02990 344 INGDHFTAKNIGFENTAGPEGHQAVALRVSADYAVFYNCQIDGYQDTLYVHS--HRQFFRDCTVSGTVDFIFGDA----- 416 (572)
T ss_pred EEcCCEEEEeeEEEeCCCCCCCceEEEEEcCCcEEEEeeeEecccchhccCC--CcEEEEeeEEecccceEccCc-----
Confidence 3557889999999985432222333332 35889999999999999887765 356889999988777877653
Q ss_pred CCcEEEEEEEeeEEecCc--e--EEEEEEecCCCC-CeeEEeEEEEeEEEecCC
Q 047315 276 EGDVRGLVVRDSTMTGTM--N--GVRIKTWANSPG-SSAATNMTFENIIMNNVS 324 (417)
Q Consensus 276 ~~~v~ni~i~n~~~~~~~--~--gi~i~~~~~~~~-g~~i~ni~~~ni~~~~~~ 324 (417)
...|+||++.... . .-.|.. .++.. .. -..+.|.|+++....
T Consensus 417 -----~avf~~C~i~~~~~~~~~~~~iTA-q~r~~~~~-~~G~vf~~C~it~~~ 463 (572)
T PLN02990 417 -----KVVLQNCNIVVRKPMKGQSCMITA-QGRSDVRE-STGLVLQNCHITGEP 463 (572)
T ss_pred -----eEEEEccEEEEecCCCCCceEEEe-CCCCCCCC-CceEEEEeeEEecCc
Confidence 3688888886421 1 123322 22211 11 367899999998754
No 117
>PLN02995 Probable pectinesterase/pectinesterase inhibitor
Probab=88.60 E-value=7.3 Score=40.54 Aligned_cols=114 Identities=11% Similarity=0.069 Sum_probs=74.1
Q ss_pred eceecEEEEeEEEECCCCCCCCCeEEee-cceeEEEEeeEEecCCceEEecCCceeEEEEeeEEcCCceEEEcccccCCC
Q 047315 197 VECKNFRGSKIKISAPANSPNTDGIHIE-RSSSVHVSRSHIGTGDDCISVGQGNSEVTIASITCGPGHGISVGSLGRYPN 275 (417)
Q Consensus 197 ~~~~~v~i~n~~i~~~~~~~~~DGi~~~-~s~nv~I~n~~i~~gdD~i~i~s~s~nv~i~n~~~~~~~gi~igs~~~~~~ 275 (417)
...+++..+|++|.+...........+. .+....+.+|.|.+..|-+...+ ..-.+++|++.+.-.+-+|..
T Consensus 309 v~~~~F~a~nitf~Ntag~~~~QAVAlrv~~Dr~~f~~c~~~G~QDTLy~~~--~Rqyy~~C~I~GtVDFIFG~a----- 381 (539)
T PLN02995 309 IEGLHFIAKGITFRNTAGPAKGQAVALRSSSDLSIFYKCSIEGYQDTLMVHS--QRQFYRECYIYGTVDFIFGNA----- 381 (539)
T ss_pred EECCCeEEEeeEEEeCCCCCCCceEEEEEcCCceeEEcceEecccchhccCC--CceEEEeeEEeeccceEeccc-----
Confidence 3567888899999985432222333332 35889999999999988887664 356899999987777777653
Q ss_pred CCcEEEEEEEeeEEecCce----EEEEEEecCCC-CCeeEEeEEEEeEEEecCC
Q 047315 276 EGDVRGLVVRDSTMTGTMN----GVRIKTWANSP-GSSAATNMTFENIIMNNVS 324 (417)
Q Consensus 276 ~~~v~ni~i~n~~~~~~~~----gi~i~~~~~~~-~g~~i~ni~~~ni~~~~~~ 324 (417)
...|+||++..... .-.|.. .++. ... -..+.|.|+++....
T Consensus 382 -----~avf~~C~i~~~~~~~~~~~~iTA-~~r~~~~~-~~G~vf~~c~i~~~~ 428 (539)
T PLN02995 382 -----AAVFQNCIILPRRPLKGQANVITA-QGRADPFQ-NTGISIHNSRILPAP 428 (539)
T ss_pred -----ceEEeccEEEEecCCCCCcceEec-CCCCCCCC-CceEEEEeeEEecCC
Confidence 36788888765321 122322 2211 112 367899999998753
No 118
>PLN02314 pectinesterase
Probab=88.21 E-value=11 Score=39.84 Aligned_cols=115 Identities=9% Similarity=0.076 Sum_probs=75.6
Q ss_pred EeceecEEEEeEEEECCCCCCCCCeEEee-cceeEEEEeeEEecCCceEEecCCceeEEEEeeEEcCCceEEEcccccCC
Q 047315 196 LVECKNFRGSKIKISAPANSPNTDGIHIE-RSSSVHVSRSHIGTGDDCISVGQGNSEVTIASITCGPGHGISVGSLGRYP 274 (417)
Q Consensus 196 ~~~~~~v~i~n~~i~~~~~~~~~DGi~~~-~s~nv~I~n~~i~~gdD~i~i~s~s~nv~i~n~~~~~~~gi~igs~~~~~ 274 (417)
....+++..+|++|.+...........+. .+....+.+|.|.+..|-+...+ ..-.+++|++.+.-.+-+|..
T Consensus 361 ~v~~~~F~a~~itf~Ntag~~~~QAvAlrv~~D~~~f~~c~~~G~QDTLy~~~--~rq~y~~C~I~GtvDFIFG~a---- 434 (586)
T PLN02314 361 AAAGKGFIAKDMGFINTAGAAKHQAVAFRSGSDMSVFYQCSFDAFQDTLYAHS--NRQFYRDCDITGTIDFIFGNA---- 434 (586)
T ss_pred EEEcCCeEEEeeEEEECCCCCCCceEEEEecCCcEEEEeeEEEeccchheeCC--CCEEEEeeEEEeccceeccCc----
Confidence 34667899999999985422222333332 35888999999999999887765 356899999988777877653
Q ss_pred CCCcEEEEEEEeeEEecCc----eEEEEEEecCCC-CCeeEEeEEEEeEEEecCC
Q 047315 275 NEGDVRGLVVRDSTMTGTM----NGVRIKTWANSP-GSSAATNMTFENIIMNNVS 324 (417)
Q Consensus 275 ~~~~v~ni~i~n~~~~~~~----~gi~i~~~~~~~-~g~~i~ni~~~ni~~~~~~ 324 (417)
...|+||.+.-.. ..-.| +..++. ... -..+.|.|+++....
T Consensus 435 ------~avf~~c~i~~~~~~~~~~~~i-TA~~r~~~~~-~~G~vf~~c~i~~~~ 481 (586)
T PLN02314 435 ------AVVFQNCNIQPRQPLPNQFNTI-TAQGKKDPNQ-NTGISIQRCTISAFG 481 (586)
T ss_pred ------eeeeeccEEEEecCCCCCCceE-ecCCCCCCCC-CCEEEEEeeEEecCC
Confidence 3688888886421 11123 222221 112 367899999998754
No 119
>PLN02313 Pectinesterase/pectinesterase inhibitor
Probab=87.89 E-value=11 Score=39.81 Aligned_cols=114 Identities=11% Similarity=0.131 Sum_probs=74.7
Q ss_pred eceecEEEEeEEEECCCCCCCCCeEEee-cceeEEEEeeEEecCCceEEecCCceeEEEEeeEEcCCceEEEcccccCCC
Q 047315 197 VECKNFRGSKIKISAPANSPNTDGIHIE-RSSSVHVSRSHIGTGDDCISVGQGNSEVTIASITCGPGHGISVGSLGRYPN 275 (417)
Q Consensus 197 ~~~~~v~i~n~~i~~~~~~~~~DGi~~~-~s~nv~I~n~~i~~gdD~i~i~s~s~nv~i~n~~~~~~~gi~igs~~~~~~ 275 (417)
...+++..+|++|.+.........+.+. .+....+.+|.|.+..|-+...+ ..-.+++|++.+.-.+-+|..
T Consensus 359 v~~~~F~a~~itf~Ntag~~~~QAvAlrv~~D~~~fy~C~~~g~QDTLy~~~--~rq~y~~c~I~GtvDFIFG~a----- 431 (587)
T PLN02313 359 AVGERFLARDITFQNTAGPSKHQAVALRVGSDFSAFYQCDMFAYQDTLYVHS--NRQFFVKCHITGTVDFIFGNA----- 431 (587)
T ss_pred EECCCeEEEeeEEEeCCCCCCCceEEEEecCCcEEEEeeeEecccchhccCC--CcEEEEeeEEeeccceeccce-----
Confidence 3557889999999985432222333332 35888999999999999888765 345899999987777777653
Q ss_pred CCcEEEEEEEeeEEecCce--E--EEEEEecCCCC-CeeEEeEEEEeEEEecCC
Q 047315 276 EGDVRGLVVRDSTMTGTMN--G--VRIKTWANSPG-SSAATNMTFENIIMNNVS 324 (417)
Q Consensus 276 ~~~v~ni~i~n~~~~~~~~--g--i~i~~~~~~~~-g~~i~ni~~~ni~~~~~~ 324 (417)
.+.|+||++.-... + -.|. ..++.. .. -..+.|.|+++....
T Consensus 432 -----~avfq~c~i~~r~~~~~~~~~iT-Aqgr~~~~~-~tG~v~~~c~i~~~~ 478 (587)
T PLN02313 432 -----AAVLQDCDINARRPNSGQKNMVT-AQGRSDPNQ-NTGIVIQNCRIGGTS 478 (587)
T ss_pred -----eEEEEccEEEEecCCCCCcceEE-ecCCCCCCC-CceEEEEecEEecCC
Confidence 47888888875321 1 1232 222211 11 367899999997654
No 120
>PF09251 PhageP22-tail: Salmonella phage P22 tail-spike; InterPro: IPR015331 This entry is represented by the Bacteriophage P22, Gp9, tailspike protein (TSP). The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. The TSP C-terminal domain adopts a structure that consists of a single-stranded right-handed beta-helix, which in turn is made of parallel beta-strands and short turns. They are required for recognition of the 0-antigenic repeating units of the cell surface, and for subsequent infection of the bacterial cell by the phage []. ; PDB: 1QA3_A 1QRB_A 2XC1_C 1QA2_A 1TYX_A 2VFQ_A 2VFO_A 1TYU_A 2VFN_A 1QA1_A ....
Probab=87.11 E-value=33 Score=34.19 Aligned_cols=37 Identities=5% Similarity=0.104 Sum_probs=21.0
Q ss_pred CcceEEEEeecceEEEeeEEecCCcceEEEeceecEEEEe
Q 047315 167 LPTNVKFVAMKKTIVRRITSVNSKSFHIALVECKNFRGSK 206 (417)
Q Consensus 167 ~~~~i~~~~~~nv~I~~v~i~n~~~~~i~~~~~~~v~i~n 206 (417)
....+.+..|.+|.+++-.- .+-+..+..|+++++.+
T Consensus 145 i~stL~I~~~~gv~v~~~~g---~ma~ylf~~c~~~k~~~ 181 (549)
T PF09251_consen 145 IGSTLRIRSCSGVEVENASG---TMAGYLFRGCHHCKVID 181 (549)
T ss_dssp --EEEEEES-ECEEEES-EE---EEEEEEEES-ECEEEES
T ss_pred ceeEEEEeccCceEEEcCcc---ceeeeeecccceEEEec
Confidence 34568888888887765332 23356677777776654
No 121
>PLN02197 pectinesterase
Probab=87.03 E-value=12 Score=39.33 Aligned_cols=115 Identities=13% Similarity=0.136 Sum_probs=76.4
Q ss_pred EeceecEEEEeEEEECCCCCCCCCeEEee-cceeEEEEeeEEecCCceEEecCCceeEEEEeeEEcCCceEEEcccccCC
Q 047315 196 LVECKNFRGSKIKISAPANSPNTDGIHIE-RSSSVHVSRSHIGTGDDCISVGQGNSEVTIASITCGPGHGISVGSLGRYP 274 (417)
Q Consensus 196 ~~~~~~v~i~n~~i~~~~~~~~~DGi~~~-~s~nv~I~n~~i~~gdD~i~i~s~s~nv~i~n~~~~~~~gi~igs~~~~~ 274 (417)
....+++..+|++|.+...........+. .+....+.+|.|.+..|-+...+ ..-.+++|++.+.-.+-+|..
T Consensus 360 ~v~~~~F~a~nitf~Ntag~~~~QAVAlrv~~D~~~fy~C~f~GyQDTLy~~~--~Rqyy~~C~I~GtVDFIFG~a---- 433 (588)
T PLN02197 360 QVESEGFMAKWIGFKNTAGPMGHQAVAIRVNGDRAVIFNCRFDGYQDTLYVNN--GRQFYRNIVVSGTVDFIFGKS---- 433 (588)
T ss_pred EEECCcEEEEEeEEEeCCCCCCCceEEEEecCCcEEEEEeEEEecCcceEecC--CCEEEEeeEEEecccccccce----
Confidence 34567899999999985432222333332 35889999999999999988765 356999999987777777553
Q ss_pred CCCcEEEEEEEeeEEecCc--eE--EEEEEecCCCC--CeeEEeEEEEeEEEecCC
Q 047315 275 NEGDVRGLVVRDSTMTGTM--NG--VRIKTWANSPG--SSAATNMTFENIIMNNVS 324 (417)
Q Consensus 275 ~~~~v~ni~i~n~~~~~~~--~g--i~i~~~~~~~~--g~~i~ni~~~ni~~~~~~ 324 (417)
...|+||++.-.. .| -.| +..++.. .. -..+.|.|+++....
T Consensus 434 ------~avfq~C~i~~r~~~~~~~~~i-TAqgr~~~~~~-~tG~vf~~C~it~~~ 481 (588)
T PLN02197 434 ------ATVIQNSLIVVRKGSKGQYNTV-TADGNEKGLAM-KIGIVLQNCRIVPDK 481 (588)
T ss_pred ------eeeeecCEEEEecCCCCCceeE-ECCCCCCCCCC-CcEEEEEccEEecCC
Confidence 2688888876421 11 223 3333211 11 357899999998753
No 122
>PF08480 Disaggr_assoc: Disaggregatase related; InterPro: IPR013687 The members of this family are disaggregatases and several hypothetical proteins of the archaeal genus Methanosarcina. Disaggregatases cause aggregates to separate into single cells [] and contain parallel beta-helix repeats. Also see IPR010671 from INTERPRO.
Probab=84.95 E-value=26 Score=30.79 Aligned_cols=93 Identities=14% Similarity=0.154 Sum_probs=52.4
Q ss_pred ceeEEEEeeEEecC--------CceEEecCCceeEEEEeeEEcCCceEEEccc---ccCCCCCcEEEEEEEeeEEecCc-
Q 047315 226 SSSVHVSRSHIGTG--------DDCISVGQGNSEVTIASITCGPGHGISVGSL---GRYPNEGDVRGLVVRDSTMTGTM- 293 (417)
Q Consensus 226 s~nv~I~n~~i~~g--------dD~i~i~s~s~nv~i~n~~~~~~~gi~igs~---~~~~~~~~v~ni~i~n~~~~~~~- 293 (417)
.++|.|++..|... -.||. .+|=.|.+|+|+.|.+..+.+|... ......+.-.-.+++|+.+.++.
T Consensus 33 a~nVhIhhN~fY~tGtn~~~~wvGGIv-~sGF~ntlIENNVfDG~y~aai~~~y~~~~~sp~gsgyttivRNNII~NT~~ 111 (198)
T PF08480_consen 33 AKNVHIHHNIFYDTGTNPNIDWVGGIV-TSGFYNTLIENNVFDGVYHAAIAQMYPDYDLSPKGSGYTTIVRNNIIVNTRK 111 (198)
T ss_pred cccEEEECcEeecCCcCCCCceeeeEE-eccccccEEEeeeecccccceEEEEecccccCCCCCceEEEEEcceEeeeee
Confidence 46788888887642 12332 2334688999999987754333221 11112232334677777776643
Q ss_pred -------eEEEEEEecCCCCCeeEEeEEEEeEEEecCC
Q 047315 294 -------NGVRIKTWANSPGSSAATNMTFENIIMNNVS 324 (417)
Q Consensus 294 -------~gi~i~~~~~~~~g~~i~ni~~~ni~~~~~~ 324 (417)
.|..|...-. . -..+.++|..+.+..
T Consensus 112 r~~~~~GtGYgv~N~L~----~-tHsFvLenNclYnN~ 144 (198)
T PF08480_consen 112 RKSSPAGTGYGVINYLP----E-THSFVLENNCLYNNA 144 (198)
T ss_pred cccCCCCceeEEEecCC----C-cceEEEEccceeccC
Confidence 3444443221 1 378888888887754
No 123
>KOG1777 consensus Putative Zn-finger protein [General function prediction only]
Probab=58.22 E-value=2.1e+02 Score=28.86 Aligned_cols=29 Identities=14% Similarity=0.209 Sum_probs=24.3
Q ss_pred CCCeEEEecCCeeeEeeeEEecCccCccceEEeEe
Q 047315 76 TGAVTLLVPHGTYLIGPIKFAGPCKNVSNITVQMK 110 (417)
Q Consensus 76 ~ggg~V~ip~GtY~~~~l~l~~~~~~~s~~~l~~~ 110 (417)
.-..-+++-+|+|....+++. |++.|.++
T Consensus 46 ~~e~LIFlH~G~~e~~~i~I~------sdvqiiGA 74 (625)
T KOG1777|consen 46 DEEKLIFLHEGTHETETIRIT------SDVQIIGA 74 (625)
T ss_pred cccceEEEEeccccceEEEEc------CCeeEecc
Confidence 345689999999998899998 88888776
No 124
>smart00710 PbH1 Parallel beta-helix repeats. The tertiary structures of pectate lyases and rhamnogalacturonase A show a stack of parallel beta strands that are coiled into a large helix. Each coil of the helix represents a structural repeat that, in some homologues, can be recognised from sequence information alone. Conservation of asparagines might be connected with asparagine-ladders that contribute to the stability of the fold. Proteins containing these repeats most often are enzymes with polysaccharide substrates.
Probab=53.10 E-value=15 Score=20.01 Aligned_cols=19 Identities=16% Similarity=0.391 Sum_probs=12.0
Q ss_pred EEEEEeeEEecCce-EEEEE
Q 047315 281 GLVVRDSTMTGTMN-GVRIK 299 (417)
Q Consensus 281 ni~i~n~~~~~~~~-gi~i~ 299 (417)
+++|+++++.+... |+.+.
T Consensus 3 ~~~i~~n~i~~~~~~Gi~i~ 22 (26)
T smart00710 3 NVTIENNTIRNNGGDGIYIG 22 (26)
T ss_pred CEEEECCEEEeCCCCcEEEe
Confidence 46677777766655 66654
No 125
>smart00722 CASH Domain present in carbohydrate binding proteins and sugar hydrolses.
Probab=52.80 E-value=43 Score=27.35 Aligned_cols=68 Identities=18% Similarity=0.111 Sum_probs=45.3
Q ss_pred EeecceEEEeeEEecC---CcceEEEeceecEEEEeEEEECCCCCCCCCeEEeecceeEEEEe-eEEecCCceEE
Q 047315 174 VAMKKTIVRRITSVNS---KSFHIALVECKNFRGSKIKISAPANSPNTDGIHIERSSSVHVSR-SHIGTGDDCIS 244 (417)
Q Consensus 174 ~~~~nv~I~~v~i~n~---~~~~i~~~~~~~v~i~n~~i~~~~~~~~~DGi~~~~s~nv~I~n-~~i~~gdD~i~ 244 (417)
..+.+..+.+-.+.+. ..+|+.+..+.+..+.+.++. . ... .+|++++.+.+..+.+ ..+....||+.
T Consensus 73 ~~~~~~~i~~N~~~~~~~~~~~Gi~~~~~~~~~~~~N~i~-~-~~~-g~G~~~~~~~~~~~~~~~~~~~~~~Gi~ 144 (146)
T smart00722 73 QNTGKNLIIDNVTINGTEGSGAGIVVTAGSEGLFIGNRII-T-NND-GDGNYLSDSSGGDLIGNRIYDNGRDGIA 144 (146)
T ss_pred cCccccEEEcceecCCCccceEEEEEECCccceEecCeEE-e-ecC-CCCEEEeCCCCcEEEcceeEecCCCcEe
Confidence 5666777777777665 377888887777666666665 1 112 6788888877777777 55555555654
No 126
>COG4704 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=50.54 E-value=69 Score=26.66 Aligned_cols=35 Identities=14% Similarity=0.239 Sum_probs=20.6
Q ss_pred cccHHHHHHHHHHHhhc--CCCeEEEecCCeeeEeeeE
Q 047315 59 TDDSKAFEAAWKEACET--TGAVTLLVPHGTYLIGPIK 94 (417)
Q Consensus 59 tDdt~aiq~Al~~a~~~--~ggg~V~ip~GtY~~~~l~ 94 (417)
.++...||+|= ..... -.-...-+|||+|-+..++
T Consensus 59 ~~~~~~f~rac-tsit~dpv~~~f~~Lk~G~YAvaa~q 95 (151)
T COG4704 59 MSDPSRFQRAC-TSITGDPVSKSFYGLKPGKYAVAAFQ 95 (151)
T ss_pred CCCchHHhhhc-ccccCCchhheeecCCCccEEEEEEE
Confidence 46788888882 11111 1112455899999876543
No 127
>COG4677 PemB Pectin methylesterase [Carbohydrate transport and metabolism]
Probab=42.68 E-value=83 Score=30.39 Aligned_cols=84 Identities=11% Similarity=0.137 Sum_probs=53.8
Q ss_pred ceecEEEEeEEEECCCC----CCCCCeEEe-ecceeEEEEeeEEecCCceEEecCC----------ceeEEEEeeEEcCC
Q 047315 198 ECKNFRGSKIKISAPAN----SPNTDGIHI-ERSSSVHVSRSHIGTGDDCISVGQG----------NSEVTIASITCGPG 262 (417)
Q Consensus 198 ~~~~v~i~n~~i~~~~~----~~~~DGi~~-~~s~nv~I~n~~i~~gdD~i~i~s~----------s~nv~i~n~~~~~~ 262 (417)
.-.++..+|+++.+... ..+.-.+.+ ..+..+.++||.+....|-+..+.. .-.-.++||++.+-
T Consensus 187 ~~ndf~~~nlT~en~~gd~~lagn~~AVaL~~dgDka~frnv~llg~QdTlFv~~~~~~~~~~tn~~~R~yftNsyI~Gd 266 (405)
T COG4677 187 QNNDFQLQNLTIENTLGDGVLAGNHPAVALATDGDKAIFRNVNLLGNQDTLFVGNSGVQNRLETNRQPRTYFTNSYIEGD 266 (405)
T ss_pred ecCCcccccceeecccCCccccCCceeEEEEecCCceeeeeeeEeeccceEEecCCCCccccccCcchhhheecceeccc
Confidence 34567777777776432 112223333 2367899999999998888877653 11456788888765
Q ss_pred ceEEEcccccCCCCCcEEEEEEEeeEEec
Q 047315 263 HGISVGSLGRYPNEGDVRGLVVRDSTMTG 291 (417)
Q Consensus 263 ~gi~igs~~~~~~~~~v~ni~i~n~~~~~ 291 (417)
-.+-+|+. -..|++|.+.-
T Consensus 267 vDfIfGsg----------taVFd~c~i~~ 285 (405)
T COG4677 267 VDFIFGSG----------TAVFDNCEIQV 285 (405)
T ss_pred ceEEeccc----------eEEeccceEEE
Confidence 57777664 25677777754
No 128
>PRK10081 entericidin B membrane lipoprotein; Provisional
Probab=31.07 E-value=55 Score=22.05 Aligned_cols=10 Identities=10% Similarity=0.129 Sum_probs=4.8
Q ss_pred CchhhhHHHH
Q 047315 1 MNTELDSKLL 10 (417)
Q Consensus 1 M~~~~~~~~~ 10 (417)
|+++++..++
T Consensus 1 MmKk~i~~i~ 10 (48)
T PRK10081 1 MVKKTIAAIF 10 (48)
T ss_pred ChHHHHHHHH
Confidence 6555444433
No 129
>PRK13883 conjugal transfer protein TrbH; Provisional
Probab=29.61 E-value=3.1e+02 Score=23.46 Aligned_cols=24 Identities=25% Similarity=0.219 Sum_probs=17.6
Q ss_pred cccHHHHHHHHHHHhhcCCCeEEE
Q 047315 59 TDDSKAFEAAWKEACETTGAVTLL 82 (417)
Q Consensus 59 tDdt~aiq~Al~~a~~~~ggg~V~ 82 (417)
.|.+++|-.||.++....|-+++.
T Consensus 59 q~~~D~Fg~aL~~aLR~~GYaV~e 82 (151)
T PRK13883 59 QPTPDAFGQALVKALRDKGYALLE 82 (151)
T ss_pred cCCCcHHHHHHHHHHHHcCeEEEe
Confidence 456678888888777777777774
No 130
>PF14262 DUF4353: Domain of unknown function (DUF4353)
Probab=28.05 E-value=5.1e+02 Score=24.36 Aligned_cols=152 Identities=21% Similarity=0.270 Sum_probs=0.0
Q ss_pred CeEEEecC-CeeeE------eeeEEecCccCccceEEeEec-EEEeecCcccccC-------------------------
Q 047315 78 AVTLLVPH-GTYLI------GPIKFAGPCKNVSNITVQMKG-YLIASTNLSEYRF------------------------- 124 (417)
Q Consensus 78 gg~V~ip~-GtY~~------~~l~l~~~~~~~s~~~l~~~G-~l~~~~~~~~~~~------------------------- 124 (417)
+.+|-|-+ |+|.+ +.+.+...-. ..+.|.|+| .|..+..+.-|..
T Consensus 6 ~~~vtIt~~GtY~lsGs~~~g~i~V~a~~~--~~v~lvL~gv~it~~~~a~I~v~~a~k~~i~la~gt~N~lsd~~~~~~ 83 (264)
T PF14262_consen 6 GSTVTITKAGTYVLSGSLSDGQIVVDAGDT--DKVRLVLDGVSITNSSGAAIYVKSADKVFITLAEGTTNTLSDGSSYTD 83 (264)
T ss_pred CCEEEEcCCEEEEEEEEccCcEEEEEcCCC--ceEEEEECCeEEeCCCCCCEEEEeCCeEEEEEcCCCceEEecCccccc
Q ss_pred -----CCCeEEEcCceeeEEecCeEEcCCCcccccCCCCCCCCCCCCCcceEEEEeecceEEEeeEEe-cCCcceEEEec
Q 047315 125 -----GAGWVEFGGVEGLTLTGGGTFDGRGAKAWPYNGCPTHFNCKLLPTNVKFVAMKKTIVRRITSV-NSKSFHIALVE 198 (417)
Q Consensus 125 -----~~~~i~~~~~~nv~I~G~G~idg~g~~~~~~~~~~~~~~~~~~~~~i~~~~~~nv~I~~v~i~-n~~~~~i~~~~ 198 (417)
...-|+.. .+++|.|.|++.-.+ ...=-++--++++|.+-++. .+...++.-..
T Consensus 84 ~~~~~~~aai~sk--~dLti~G~GtL~V~g------------------~~~~GI~s~d~L~I~~Gti~V~a~~dGi~g~d 143 (264)
T PF14262_consen 84 SDDDEPDAAIYSK--GDLTINGSGTLTVTG------------------NYKHGIHSKDDLVITGGTITVTAADDGIKGKD 143 (264)
T ss_pred ccCCCccEEEEEC--CCEEEcceEEEEEEe------------------cccCcEEeCCeEEEEecEEEEEEcccceecce
Q ss_pred eecEEEEeEEEECCCCCCCCCeEEeecceeEEEEeeEEecC-------CceEEecCCceeEEEEeeEE
Q 047315 199 CKNFRGSKIKISAPANSPNTDGIHIERSSSVHVSRSHIGTG-------DDCISVGQGNSEVTIASITC 259 (417)
Q Consensus 199 ~~~v~i~n~~i~~~~~~~~~DGi~~~~s~nv~I~n~~i~~g-------dD~i~i~s~s~nv~i~n~~~ 259 (417)
+-.+.=-.++|.. ..|||+-...++-.--...|..| +|+|.-.. .++|.+-++
T Consensus 144 ~v~I~gGti~i~a-----~~DGI~s~n~~d~~~G~v~I~GGtitI~a~~DGI~A~~---~l~I~GGti 203 (264)
T PF14262_consen 144 SVTINGGTITITA-----GGDGIKSDNDEDESKGYVTINGGTITITAGDDGIDANG---DLTINGGTI 203 (264)
T ss_pred EEEEeCCEEEEEe-----CCCcccccCccccceeEEEEeCCEEEEEeCCCCccCce---eEEEcCCeE
No 131
>COG5567 Predicted small periplasmic lipoprotein [Cell motility and secretion]
Probab=25.99 E-value=1.2e+02 Score=21.12 Aligned_cols=12 Identities=33% Similarity=0.368 Sum_probs=5.3
Q ss_pred CchhhhHHHHHH
Q 047315 1 MNTELDSKLLLV 12 (417)
Q Consensus 1 M~~~~~~~~~l~ 12 (417)
|++.+++.+++.
T Consensus 1 mk~~~~s~~ala 12 (58)
T COG5567 1 MKNVFKSLLALA 12 (58)
T ss_pred ChhHHHHHHHHH
Confidence 554444444333
No 132
>PRK14864 putative biofilm stress and motility protein A; Provisional
Probab=25.65 E-value=3.5e+02 Score=21.56 Aligned_cols=6 Identities=17% Similarity=-0.186 Sum_probs=3.7
Q ss_pred eeEEee
Q 047315 44 LLVNVK 49 (417)
Q Consensus 44 ~~~nv~ 49 (417)
++++|.
T Consensus 52 GtVSvs 57 (104)
T PRK14864 52 GTVSAL 57 (104)
T ss_pred eEEEEe
Confidence 466666
No 133
>PF10162 G8: G8 domain; InterPro: IPR019316 This entry represents a domain found in disease proteins PKHD1 and KIAA1199 and is named G8 after its 8 conserved glycines. It is predicted to contain 10 beta strands and an alpha helix [].
Probab=24.28 E-value=1.9e+02 Score=23.69 Aligned_cols=51 Identities=20% Similarity=0.390 Sum_probs=29.3
Q ss_pred CCeEEEecCCeeeE-e-e-eEEecCccCccceEEeEecEEEeecCcccccCCCCeEEEcCceeeEEecCeEE
Q 047315 77 GAVTLLVPHGTYLI-G-P-IKFAGPCKNVSNITVQMKGYLIASTNLSEYRFGAGWVEFGGVEGLTLTGGGTF 145 (417)
Q Consensus 77 ggg~V~ip~GtY~~-~-~-l~l~~~~~~~s~~~l~~~G~l~~~~~~~~~~~~~~~i~~~~~~nv~I~G~G~i 145 (417)
.+..|+||+|...+ . + ..+ -.|.+.|+|.+..+ ++. -+ .++.|.|.|.|.+
T Consensus 11 ~g~~V~I~~g~~v~lD~~~~~l---------~~l~I~G~L~f~~~-~~~-----~L---~a~~I~V~~Gg~l 64 (125)
T PF10162_consen 11 AGDNVVIPAGQTVLLDVSTPKL---------GSLIIGGTLIFDDD-RDI-----TL---RAEYILVEGGGRL 64 (125)
T ss_pred CCCEEEECCCCEEEEcCCChhe---------eEEEEEEEEEEccC-CCC-----EE---EEEEEEECCCCeE
Confidence 36799999997553 3 2 223 23445889998754 221 11 1367777774333
No 134
>PHA00672 hypothetical protein
Probab=23.87 E-value=1.4e+02 Score=24.48 Aligned_cols=30 Identities=23% Similarity=0.371 Sum_probs=20.6
Q ss_pred eEEEecCCeeeEeeeEEecCccCccceEEeEecEEEe
Q 047315 79 VTLLVPHGTYLIGPIKFAGPCKNVSNITVQMKGYLIA 115 (417)
Q Consensus 79 g~V~ip~GtY~~~~l~l~~~~~~~s~~~l~~~G~l~~ 115 (417)
.++.||+|+-+++.+.=- +++ |.+.|.+..
T Consensus 50 Rei~IPkGt~LtG~~hkf------~~~-ii~sG~itV 79 (152)
T PHA00672 50 RTIRIPAGVALTGALIKV------STV-LIFSGHATV 79 (152)
T ss_pred EEEeccCceeeeeeeeEe------eEE-EEecccEEE
Confidence 489999999999854333 666 666664443
No 135
>PRK09752 adhesin; Provisional
Probab=22.29 E-value=1.3e+03 Score=26.91 Aligned_cols=10 Identities=10% Similarity=0.265 Sum_probs=4.8
Q ss_pred EEEEeeEEec
Q 047315 229 VHVSRSHIGT 238 (417)
Q Consensus 229 v~I~n~~i~~ 238 (417)
+.|.|+.|.+
T Consensus 155 l~I~NS~F~n 164 (1250)
T PRK09752 155 LRVTNAMFRN 164 (1250)
T ss_pred EEEEecEEEc
Confidence 4455555443
No 136
>PF05342 Peptidase_M26_N: M26 IgA1-specific Metallo-endopeptidase N-terminal region; InterPro: IPR008006 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases corresponds to MEROPS peptidase family M26 (clan MA(E)). The active site residues for members of this family and family M4 occur in the motif HEXXH. The type example is IgA1-specific metalloendopeptidase from Streptococcus sanguis (Q59986 from SWISSPROT).; GO: 0004222 metalloendopeptidase activity, 0008270 zinc ion binding, 0016021 integral to membrane
Probab=21.89 E-value=56 Score=30.33 Aligned_cols=40 Identities=20% Similarity=0.266 Sum_probs=23.5
Q ss_pred CceeEeeEEEEeEEEEecCCceEEEeecCCCce-eeEEEEeEEEEe
Q 047315 345 SRVKLSDIYFKNIRGTSSSAVAVALECSKGIPC-QNIYLENVHLDL 389 (417)
Q Consensus 345 ~~~~v~nI~~~ni~~~~~~~~~~~i~~~~~~~~-~~i~~~nv~i~~ 389 (417)
.++.|+||.|+|+.+... .....+... + .+=+++||+++|
T Consensus 210 ~gatI~nL~l~nv~I~~~-d~va~LA~~----ak~~t~IenV~v~G 250 (250)
T PF05342_consen 210 NGATIKNLNLKNVNINGP-DDVAALANE----AKNNTTIENVKVTG 250 (250)
T ss_pred cCCEEEcceeEEeeeecc-ccHHHHHHh----hccCCEEEEEEecC
Confidence 345899999999988874 222222221 2 245666666653
No 137
>PF08139 LPAM_1: Prokaryotic membrane lipoprotein lipid attachment site; InterPro: IPR012640 In prokaryotes, membrane lipoproteins are synthesized with a precursor signal peptide, which is cleaved by a specific lipoprotein signal peptidase (signal peptidase II). The peptidase recognises a conserved sequence and cuts upstream of a cysteine residue to which a glyceride-fatty acid lipid is attached [,]. This lipid attachment site is found in homologues of the VirB proteins of type IV secretion systems (T4SS). Conjugal transfer across the cell envelope of Gram-negative bacteria is mediated by a supramolecular structure termed mating pair formation (Mpf) complex. Collectively, secretion pathways ancestrally related to bacterial conjugation systems are now known as T4SS. T4SS are involved in the delivery of effector molecules to eukaryotic target cells; each of these systems exports distinct DNA or protein substrates to effect a myriad of changes in host cell physiology during infection [].
Probab=21.51 E-value=1.1e+02 Score=17.54 Aligned_cols=11 Identities=18% Similarity=0.289 Sum_probs=4.3
Q ss_pred hHHHHHHHHHH
Q 047315 6 DSKLLLVLFII 16 (417)
Q Consensus 6 ~~~~~l~~~~~ 16 (417)
++++++++++.
T Consensus 8 Kkil~~l~a~~ 18 (25)
T PF08139_consen 8 KKILFPLLALF 18 (25)
T ss_pred HHHHHHHHHHH
Confidence 33444443333
No 138
>PF03032 Brevenin: Brevenin/esculentin/gaegurin/rugosin family; InterPro: IPR004275 In addition to the highly specific cell-mediated immune system, vertebrates possess an efficient host-defence mechanism against invading microorganisms which involves the synthesis of highly potent antimicrobial peptides with a large spectrum of activity. This entry represents a number of these defence peptides secreted from the skin of amphibians, including the opiate-like dermorphins and deltorphins, and the antimicrobial dermoseptins and temporins.; GO: 0006952 defense response, 0042742 defense response to bacterium, 0005576 extracellular region
Probab=21.21 E-value=56 Score=21.85 Aligned_cols=21 Identities=29% Similarity=0.422 Sum_probs=11.5
Q ss_pred hhHHHHHHHHHHHHhhcccCC
Q 047315 5 LDSKLLLVLFIICFSDAFAGG 25 (417)
Q Consensus 5 ~~~~~~l~~~~~~~~~~~~~~ 25 (417)
|++.++|++++...+...+..
T Consensus 3 lKKsllLlfflG~ISlSlCee 23 (46)
T PF03032_consen 3 LKKSLLLLFFLGTISLSLCEE 23 (46)
T ss_pred chHHHHHHHHHHHcccchHHH
Confidence 455566665655555555433
Done!