Query 047317
Match_columns 299
No_of_seqs 66 out of 68
Neff 4.9
Searched_HMMs 13730
Date Mon Mar 25 17:23:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047317.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/047317hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2ifta1 c.66.1.46 (A:11-193) P 16.7 26 0.0019 27.3 1.7 30 31-60 59-89 (183)
2 d1eucb1 c.23.4.1 (B:246-393) S 15.1 81 0.0059 24.4 4.4 25 35-59 40-66 (148)
3 d1clia1 d.79.4.1 (A:5-170) Ami 15.0 41 0.003 26.6 2.6 44 25-68 77-130 (166)
4 d2bv3a3 d.14.1.1 (A:479-599) E 14.8 18 0.0013 27.1 0.3 12 192-203 72-83 (121)
5 d2dy1a3 d.14.1.1 (A:455-569) E 14.2 18 0.0013 27.1 0.1 12 192-203 66-77 (115)
6 d1e0ca1 c.46.1.2 (A:1-135) Sul 12.8 36 0.0027 24.1 1.5 24 84-112 9-32 (135)
7 d2gwfa1 c.46.1.4 (A:181-315) U 11.9 97 0.0071 21.8 3.8 25 85-112 2-26 (135)
8 d1rhsa1 c.46.1.2 (A:1-149) Rho 10.6 1.2E+02 0.0088 22.4 4.1 31 85-116 9-39 (149)
9 d1odha_ d.239.1.1 (A:) Mgcm1 { 10.5 37 0.0027 26.9 0.9 12 199-210 117-128 (158)
10 d1urha1 c.46.1.2 (A:2-148) 3-m 10.1 58 0.0042 24.3 1.9 30 83-117 2-31 (147)
No 1
>d2ifta1 c.66.1.46 (A:11-193) Putative methylase HI0767 {Haemophilus influenzae [TaxId: 727]}
Probab=16.73 E-value=26 Score=27.27 Aligned_cols=30 Identities=20% Similarity=0.334 Sum_probs=22.0
Q ss_pred HHHHhcCCceeEEeecCCChH-HHHHHHHHH
Q 047317 31 ILALCTGMRPVIMVDYGGKMP-ELQEHLCEL 60 (299)
Q Consensus 31 VlaV~~GLRPAvL~Dy~~~~~-qlq~~L~~L 60 (299)
+=|+.+|-+.+++||-+.... .+++.+..|
T Consensus 59 lEalSRGA~~v~fVE~~~~a~~~ik~Ni~~l 89 (183)
T d2ifta1 59 FEALSRQAKKVTFLELDKTVANQLKKNLQTL 89 (183)
T ss_dssp HHHHHTTCSEEEEECSCHHHHHHHHHHHHHT
T ss_pred eeeeeecceeeEEeecccchhhhHhhHHhhh
Confidence 557899999999999998654 454444433
No 2
>d1eucb1 c.23.4.1 (B:246-393) Succinyl-CoA synthetase, beta-chain, C-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}
Probab=15.13 E-value=81 Score=24.45 Aligned_cols=25 Identities=20% Similarity=0.401 Sum_probs=17.6
Q ss_pred hcCCceeEEeecCCChH--HHHHHHHH
Q 047317 35 CTGMRPVIMVDYGGKMP--ELQEHLCE 59 (299)
Q Consensus 35 ~~GLRPAvL~Dy~~~~~--qlq~~L~~ 59 (299)
..|.|||-..|.+|.-+ ++.+.+.=
T Consensus 40 ~~Gg~pANFlDiGGga~~e~v~~al~i 66 (148)
T d1eucb1 40 LNGGKPANFLDLGGGVKESQVYQAFKL 66 (148)
T ss_dssp HTTCCBSEEEECCSSCCHHHHHHHHHH
T ss_pred HcCCCeeeEEecCCCCCHHHHHHHHHH
Confidence 36889999999997655 45444433
No 3
>d1clia1 d.79.4.1 (A:5-170) Aminoimidazole ribonucleotide synthetase (PurM) N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=15.04 E-value=41 Score=26.60 Aligned_cols=44 Identities=18% Similarity=0.404 Sum_probs=32.8
Q ss_pred hhhHHHHHH------HhcCCceeEEeecCCChH----HHHHHHHHHHHHhhhcC
Q 047317 25 LRLEIDILA------LCTGMRPVIMVDYGGKMP----ELQEHLCELLKRCQKES 68 (299)
Q Consensus 25 ~~La~dVla------V~~GLRPAvL~Dy~~~~~----qlq~~L~~LL~~~q~~~ 68 (299)
..++.|+.| +|.|-||-.++||.+... .+.+.+..+.+.|++.+
T Consensus 77 ~~iG~DlVam~vNDil~~GA~Pl~flDY~a~~~~~~~~~~~iv~Gi~~ac~~~~ 130 (166)
T d1clia1 77 DTIGIDLVAMCVNDLVVQGAEPLFFLDYYATGKLDVDTASAVISGIAEGCLQSG 130 (166)
T ss_dssp SSHHHHHHHHHHHHHGGGTCEEEEEEEEEEESSCCHHHHHHHHHHHHHHHHHHT
T ss_pred cCcchhhHhhccchhhhccHHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHhC
Confidence 456777776 578999999999986543 46677777777777654
No 4
>d2bv3a3 d.14.1.1 (A:479-599) Elongation factor G (EF-G), domain IV {Thermus thermophilus [TaxId: 274]}
Probab=14.79 E-value=18 Score=27.11 Aligned_cols=12 Identities=50% Similarity=0.922 Sum_probs=10.2
Q ss_pred ceeeeecCCceE
Q 047317 192 TLNGWLLGYPVV 203 (299)
Q Consensus 192 TL~G~LLGYPVv 203 (299)
...|.|.||||+
T Consensus 72 ~~~G~l~G~pv~ 83 (121)
T d2bv3a3 72 MQSGPLIGFPVV 83 (121)
T ss_dssp TTSCSSSSCCBC
T ss_pred HHhcCcCCCEeE
Confidence 567999999996
No 5
>d2dy1a3 d.14.1.1 (A:455-569) Elongation factor G (EF-G), domain IV {Thermus thermophilus, EF-G-2 [TaxId: 274]}
Probab=14.16 E-value=18 Score=27.08 Aligned_cols=12 Identities=42% Similarity=0.844 Sum_probs=10.2
Q ss_pred ceeeeecCCceE
Q 047317 192 TLNGWLLGYPVV 203 (299)
Q Consensus 192 TL~G~LLGYPVv 203 (299)
...|.|.||||+
T Consensus 66 ~~~G~l~GyPv~ 77 (115)
T d2dy1a3 66 AKKGVLAGFPVM 77 (115)
T ss_dssp HTSCTTTSCCBC
T ss_pred hhcccccCCcee
Confidence 457999999996
No 6
>d1e0ca1 c.46.1.2 (A:1-135) Sulfurtransferase {Azotobacter vinelandii [TaxId: 354]}
Probab=12.78 E-value=36 Score=24.11 Aligned_cols=24 Identities=33% Similarity=0.418 Sum_probs=18.0
Q ss_pred EEEehhHHHHHHHhhccCCCceEEEEccC
Q 047317 84 YLIHVKGLAEYVSSSLSSEAELHFVDLEQ 112 (299)
Q Consensus 84 ~lIn~~~l~e~l~~~l~s~~~~~FVDvs~ 112 (299)
+||+++.+.+++. .+++.+||++.
T Consensus 9 ~lIs~~el~~~l~-----~~~~viiDvR~ 32 (135)
T d1e0ca1 9 LVIEPADLQARLS-----APELILVDLTS 32 (135)
T ss_dssp SEECHHHHHTTTT-----CTTEEEEECSC
T ss_pred cEeeHHHHHHHhc-----CCCeEEEECCC
Confidence 6788888887664 23688999875
No 7
>d2gwfa1 c.46.1.4 (A:181-315) Ubiquitin carboxyl-terminal hydrolase 8, USP8 {Human (Homo sapiens) [TaxId: 9606]}
Probab=11.92 E-value=97 Score=21.76 Aligned_cols=25 Identities=20% Similarity=0.272 Sum_probs=19.1
Q ss_pred EEehhHHHHHHHhhccCCCceEEEEccC
Q 047317 85 LIHVKGLAEYVSSSLSSEAELHFVDLEQ 112 (299)
Q Consensus 85 lIn~~~l~e~l~~~l~s~~~~~FVDvs~ 112 (299)
.|+|+.+.+.+++. +.++++||++.
T Consensus 2 ~Is~~eL~~~l~~~---~~~~liiDvR~ 26 (135)
T d2gwfa1 2 AITAKELYTMMTDK---NISLIIMDARR 26 (135)
T ss_dssp EECHHHHHHHHHST---TSCEEEEECSC
T ss_pred eECHHHHHHHHhcC---CCCEEEEEecC
Confidence 37888998888743 33689999985
No 8
>d1rhsa1 c.46.1.2 (A:1-149) Rhodanese {Cow (Bos taurus) [TaxId: 9913]}
Probab=10.61 E-value=1.2e+02 Score=22.41 Aligned_cols=31 Identities=29% Similarity=0.282 Sum_probs=22.8
Q ss_pred EEehhHHHHHHHhhccCCCceEEEEccCCCCc
Q 047317 85 LIHVKGLAEYVSSSLSSEAELHFVDLEQDPPK 116 (299)
Q Consensus 85 lIn~~~l~e~l~~~l~s~~~~~FVDvs~s~P~ 116 (299)
||.++-|.++++.... ++++.+||++...|.
T Consensus 9 lVs~~wL~~~L~~~~~-~~~~~IiD~r~~~~~ 39 (149)
T d1rhsa1 9 LVSTKWLAESVRAGKV-GPGLRVLDASWYSPG 39 (149)
T ss_dssp EECHHHHHHHHHTTCC-BTTEEEEECCCCCTT
T ss_pred ccCHHHHHHHHhccCC-CCCEEEEEecCcCCC
Confidence 7888889888886433 237899999876554
No 9
>d1odha_ d.239.1.1 (A:) Mgcm1 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=10.54 E-value=37 Score=26.93 Aligned_cols=12 Identities=25% Similarity=0.791 Sum_probs=10.1
Q ss_pred CCceEEEecCCC
Q 047317 199 GYPVVYLFDKEH 210 (299)
Q Consensus 199 GYPVvY~f~~~~ 210 (299)
||||++++..+.
T Consensus 117 GypVthfWr~~~ 128 (158)
T d1odha_ 117 GFPVTNFWRHDG 128 (158)
T ss_dssp TBCCEEEEEECS
T ss_pred CCcceEEEEEcC
Confidence 999999998553
No 10
>d1urha1 c.46.1.2 (A:2-148) 3-mercaptopyruvate sulfurtransferase {Escherichia coli [TaxId: 562]}
Probab=10.06 E-value=58 Score=24.26 Aligned_cols=30 Identities=20% Similarity=0.428 Sum_probs=22.1
Q ss_pred EEEEehhHHHHHHHhhccCCCceEEEEccCCCCcc
Q 047317 83 IYLIHVKGLAEYVSSSLSSEAELHFVDLEQDPPKM 117 (299)
Q Consensus 83 i~lIn~~~l~e~l~~~l~s~~~~~FVDvs~s~P~l 117 (299)
.|||.++-|.+++. .+++.+||++...|..
T Consensus 2 ~~lVs~~wL~~~L~-----~~~v~iiD~r~~~~~~ 31 (147)
T d1urha1 2 TWFVGADWLAEHID-----DPEIQIIDARMASPGQ 31 (147)
T ss_dssp CCEECHHHHHTTTT-----CTTEEEEECCCCCSSC
T ss_pred CccCcHHHHHHHhC-----CCCeEEEEeeCCCCCc
Confidence 47889988887765 3379999998665433
Done!