BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 047319
(376 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3E4E|A Chain A, Human Cytochrome P450 2e1 In Complex With The Inhibitor 4-
Methylpyrazole
pdb|3E4E|B Chain B, Human Cytochrome P450 2e1 In Complex With The Inhibitor 4-
Methylpyrazole
pdb|3E6I|A Chain A, Human Cytochrome P450 2e1 In Complex With The Inhibitor
Indazole
pdb|3E6I|B Chain B, Human Cytochrome P450 2e1 In Complex With The Inhibitor
Indazole
pdb|3GPH|A Chain A, Human Cytochrome P450 2e1 In Complex With
Omega-Imidazolyl-Decanoic Acid
pdb|3GPH|B Chain B, Human Cytochrome P450 2e1 In Complex With
Omega-Imidazolyl-Decanoic Acid
pdb|3KOH|A Chain A, Cytochrome P450 2e1 With Omega-Imidazolyl Octanoic Acid
pdb|3KOH|B Chain B, Cytochrome P450 2e1 With Omega-Imidazolyl Octanoic Acid
pdb|3LC4|A Chain A, Human Cytochrome P450 2e1 In Complex With
Omega-Imidazolyl-Dodecanoic Acid
pdb|3LC4|B Chain B, Human Cytochrome P450 2e1 In Complex With
Omega-Imidazolyl-Dodecanoic Acid
pdb|3T3Z|A Chain A, Human Cytochrome P450 2e1 In Complex With Pilocarpine
pdb|3T3Z|B Chain B, Human Cytochrome P450 2e1 In Complex With Pilocarpine
pdb|3T3Z|C Chain C, Human Cytochrome P450 2e1 In Complex With Pilocarpine
pdb|3T3Z|D Chain D, Human Cytochrome P450 2e1 In Complex With Pilocarpine
Length = 476
Score = 60.5 bits (145), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 49/174 (28%), Positives = 84/174 (48%), Gaps = 7/174 (4%)
Query: 103 KSRSIDLLPPSPPALPIVGHLYLLSSK-LPESLQTLAHRYGPLMRIRIGASTFFVVSNAT 161
K+ S LPP P LPI+G+L+ L K +P+S LA R+GP+ + +G+ V+
Sbjct: 4 KTSSKGKLPPGPFPLPIIGNLFQLELKNIPKSFTRLAQRFGPVFTLYVGSQRMVVMHGYK 63
Query: 162 IAKEIFKTHDISFSSRYESGPSAYNIYRGTGFITGPYGAYYRFMRKLCATELFAGPQMDR 221
KE + FS R + A++ +R G I G ++ +R+ T L +
Sbjct: 64 AVKEALLDYKDEFSGRGDL--PAFHAHRDRGIIFN-NGPTWKDIRRFSLTTLRNYGMGKQ 120
Query: 222 YNKLR-EQEIERLLKSLMKSSREGKPCDLGLELAAMANNLTFRMIMNKRFCENN 274
N+ R ++E LL++L K+ +G+P D + N+ ++ K F N+
Sbjct: 121 GNESRIQREAHFLLEALRKT--QGQPFDPTFLIGCAPCNVIADILFRKHFDYND 172
>pdb|1PQ2|A Chain A, Crystal Structure Of Human Drug Metabolizing Cytochrome
P450 2c8
pdb|1PQ2|B Chain B, Crystal Structure Of Human Drug Metabolizing Cytochrome
P450 2c8
pdb|2NNH|A Chain A, Cyp2c8dh Complexed With 2 Molecules Of 9-Cis Retinoic Acid
pdb|2NNH|B Chain B, Cyp2c8dh Complexed With 2 Molecules Of 9-Cis Retinoic Acid
pdb|2NNI|A Chain A, Cyp2c8dh Complexed With Montelukast
pdb|2NNJ|A Chain A, Cyp2c8dh Complexed With Felodipine
pdb|2VN0|A Chain A, Cyp2c8dh Complexed With Troglitazone
Length = 476
Score = 56.2 bits (134), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 45/169 (26%), Positives = 72/169 (42%), Gaps = 4/169 (2%)
Query: 103 KSRSIDLLPPSPPALPIVGHLYLLSSK-LPESLQTLAHRYGPLMRIRIGASTFFVVSNAT 161
K+ S LPP P LPI+G++ + K + +S + YGP+ + G + V
Sbjct: 4 KTSSKGKLPPGPTPLPIIGNMLQIDVKDICKSFTNFSKVYGPVFTVYFGMNPIVVFHGYE 63
Query: 162 IAKEIFKTHDISFSSRYESGPSAYNIYRGTGFITGPYGAYYRFMRKLCATELFAGPQMDR 221
KE + FS R S P + I +G G I+ G ++ +R+ T L R
Sbjct: 64 AVKEALIDNGEEFSGRGNS-PISQRITKGLGIISS-NGKRWKEIRRFSLTTLRNFGMGKR 121
Query: 222 YNKLREQEIERLLKSLMKSSREGKPCDLGLELAAMANNLTFRMIMNKRF 270
+ R QE L ++ ++ PCD L N+ ++ KRF
Sbjct: 122 SIEDRVQEEAHCLVEELRKTK-ASPCDPTFILGCAPCNVICSVVFQKRF 169
>pdb|4GQS|A Chain A, Structure Of Human Microsomal Cytochrome P450 (cyp) 2c19
pdb|4GQS|B Chain B, Structure Of Human Microsomal Cytochrome P450 (cyp) 2c19
pdb|4GQS|C Chain C, Structure Of Human Microsomal Cytochrome P450 (cyp) 2c19
pdb|4GQS|D Chain D, Structure Of Human Microsomal Cytochrome P450 (cyp) 2c19
Length = 477
Score = 52.8 bits (125), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 54/224 (24%), Positives = 93/224 (41%), Gaps = 7/224 (3%)
Query: 110 LPPSPPALPIVGHLYLLSSK-LPESLQTLAHRYGPLMRIRIGASTFFVVSNATIAKEIFK 168
LPP P LP++G++ + K + +SL L+ YGP+ + G V+ + KE
Sbjct: 12 LPPGPTPLPVIGNILQIDIKDVSKSLTNLSKIYGPVFTLYFGLERMVVLHGYEVVKEALI 71
Query: 169 THDISFSSRYESGPSAYNIYRGTGFITGPYGAYYRFMRKLCATELFAGPQMDRYNKLREQ 228
FS R P A RG G + G ++ +R+ L R + R Q
Sbjct: 72 DLGEEFSGRGHF-PLAERANRGFGIVFS-NGKRWKEIRRFSLMTLRNFGMGKRSIEDRVQ 129
Query: 229 EIERLLKSLMKSSREGKPCDLGLELAAMANNLTFRMIMNKRFCENNGSEAKRMRDSIVEI 288
E R L ++ ++ PCD L N+ +I KRF + + + + + E
Sbjct: 130 EEARCLVEELRKTK-ASPCDPTFILGCAPCNVICSIIFQKRF-DYKDQQFLNLMEKLNEN 187
Query: 289 MELATKFGINELFGFLNKIDLFGNGKN--LKDAMWRYDELIEEI 330
+ + + I F ID F N LK+ + +++E++
Sbjct: 188 IRIVSTPWIQICNNFPTIIDYFPGTHNKLLKNLAFMESDILEKV 231
>pdb|1R9O|A Chain A, Crystal Structure Of P4502c9 With Flurbiprofen Bound
Length = 477
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 44/162 (27%), Positives = 68/162 (41%), Gaps = 4/162 (2%)
Query: 110 LPPSPPALPIVGHLYLLSSK-LPESLQTLAHRYGPLMRIRIGASTFFVVSNATIAKEIFK 168
LPP P LP++G++ + K + +SL L+ YGP+ + G V+ KE
Sbjct: 12 LPPGPTPLPVIGNILQIGIKDISKSLTNLSKVYGPVFTLYFGLKPIVVLHGYEAVKEALI 71
Query: 169 THDISFSSRYESGPSAYNIYRGTGFITGPYGAYYRFMRKLCATELFAGPQMDRYNKLREQ 228
FS R P A RG G + G ++ +R+ L R + R Q
Sbjct: 72 DLGEEFSGR-GIFPLAERANRGFGIVFS-NGKKWKEIRRFSLMTLRNFGMGKRSIEDRVQ 129
Query: 229 EIERLLKSLMKSSREGKPCDLGLELAAMANNLTFRMIMNKRF 270
E R L ++ ++ PCD L N+ +I +KRF
Sbjct: 130 EEARCLVEELRKTK-ASPCDPTFILGCAPCNVICSIIFHKRF 170
>pdb|1OG2|A Chain A, Structure Of Human Cytochrome P450 Cyp2c9
pdb|1OG2|B Chain B, Structure Of Human Cytochrome P450 Cyp2c9
pdb|1OG5|A Chain A, Structure Of Human Cytochrome P450 Cyp2c9
pdb|1OG5|B Chain B, Structure Of Human Cytochrome P450 Cyp2c9
Length = 475
Score = 49.3 bits (116), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 57/235 (24%), Positives = 97/235 (41%), Gaps = 12/235 (5%)
Query: 99 KTFTKSRSIDLLPPSPPALPIVGHLYLLSSK-LPESLQTLAHRYGPLMRIRIGASTFFVV 157
KT +K R PP P LP++G++ + K + +SL L+ YGP+ + G V+
Sbjct: 4 KTSSKGR-----PPGPTPLPVIGNILQIGIKDISKSLTNLSKVYGPVFTLYFGLKPIVVL 58
Query: 158 SNATIAKEIFKTHDISFSSRYESGPSAYNIYRGTGFITGPYGAYYRFMRKLCATELFAGP 217
KE FS R P A RG G + G ++ +R+ L
Sbjct: 59 HGYEAVKEALIDLGEEFSGR-GIFPLAERANRGFGIVFS-NGKKWKEIRRFSLMTLRNFG 116
Query: 218 QMDRYNKLREQEIERLLKSLMKSSREGKPCDLGLELAAMANNLTFRMIMNKRFCENNGSE 277
R + R QE R L ++ ++ PCD L N+ +I +KRF + +
Sbjct: 117 MGKRSIEDRVQEEARCLVEELRKTK-ASPCDPTFILGCAPCNVICSIIFHKRF-DYKDQQ 174
Query: 278 AKRMRDSIVEIMELATKFGINELFGFLNKIDLFGNGKN--LKDAMWRYDELIEEI 330
+ + + E +E+ + I F +D F N LK+ + ++E++
Sbjct: 175 FLNLMEKLNENIEILSSPWIQVYNNFPALLDYFPGTHNKLLKNVAFMKSYILEKV 229
>pdb|1DT6|A Chain A, Structure Of Mammalian Cytochrome P450 2c5
pdb|1N6B|A Chain A, Microsomal Cytochrome P450 2c5/3lvdh Complex With A
Dimethyl Derivative Of Sulfaphenazole
pdb|1NR6|A Chain A, Microsomal Cytochrome P450 2c53LVDH COMPLEX WITH
DICLOFENAC
Length = 473
Score = 48.5 bits (114), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 48/190 (25%), Positives = 80/190 (42%), Gaps = 5/190 (2%)
Query: 103 KSRSIDLLPPSPPALPIVGHLYLLSSK-LPESLQTLAHRYGPLMRIRIGASTFFVVSNAT 161
K+ S LPP P PI+G++ + +K + +SL + YGP+ + +G V+
Sbjct: 4 KTSSKGKLPPGPTPFPIIGNILQIDAKDISKSLTKFSECYGPVFTVYLGMKPTVVLHGYE 63
Query: 162 IAKEIFKTHDISFSSRYESGPSAYNIYRGTGFITGPYGAYYRFMRKLCATELFAGPQMDR 221
KE F+ R S P + +G G I ++ MR+ L R
Sbjct: 64 AVKEALVDLGEEFAGR-GSVPILEKVSKGLG-IAFSNAKTWKEMRRFSLMTLRNFGMGKR 121
Query: 222 YNKLREQEIERLLKSLMKSSREGKPCDLGLELAAMANNLTFRMIMNKRFCENNGSEAKRM 281
+ R QE R L ++ + PCD L N+ +I + RF + E ++
Sbjct: 122 SIEDRIQEEARCLVEELRKTN-ASPCDPTFILGCAPCNVICSVIFHNRF-DYKDEEFLKL 179
Query: 282 RDSIVEIMEL 291
+S+ E +EL
Sbjct: 180 MESLHENVEL 189
>pdb|3RUK|A Chain A, Human Cytochrome P450 Cyp17a1 In Complex With Abiraterone
pdb|3RUK|B Chain B, Human Cytochrome P450 Cyp17a1 In Complex With Abiraterone
pdb|3RUK|C Chain C, Human Cytochrome P450 Cyp17a1 In Complex With Abiraterone
pdb|3RUK|D Chain D, Human Cytochrome P450 Cyp17a1 In Complex With Abiraterone
pdb|3SWZ|A Chain A, Human Cytochrome P450 17a1 In Complex With Tok-001
pdb|3SWZ|B Chain B, Human Cytochrome P450 17a1 In Complex With Tok-001
pdb|3SWZ|C Chain C, Human Cytochrome P450 17a1 In Complex With Tok-001
pdb|3SWZ|D Chain D, Human Cytochrome P450 17a1 In Complex With Tok-001
Length = 494
Score = 48.5 bits (114), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 55/231 (23%), Positives = 102/231 (44%), Gaps = 15/231 (6%)
Query: 111 PPSPPALPIVGHLYLLS--SKLPESLQTLAHRYGPLMRIRIGASTFFVVSNATIAKEIFK 168
P S +LP+VG L L + + L +YGP+ +R+G T +V + +AKE+
Sbjct: 10 PKSLLSLPLVGSLPFLPRHGHMHNNFFKLQKKYGPIYSVRMGTKTTVIVGHHQLAKEVLI 69
Query: 169 THDISFSSRYESGP--SAYNIYRGTGFITGPYGAYYRFMRKLC-ATELFAGPQMDRYNKL 225
FS R + A N +G F GA+++ R+L AT + K+
Sbjct: 70 KKGKDFSGRPQMATLDIASNNRKGIAFADS--GAHWQLHRRLAMATFALFKDGDQKLEKI 127
Query: 226 REQEIERLLKSLMKSSREGKPCDLGLELAAMANNLTFRMIMNKRFCENNGSEAKRMRDSI 285
QEI L M ++ G+ D+ + N+ + N + +N E +++
Sbjct: 128 ICQEISTLCD--MLATHNGQSIDISFPVFVAVTNVISLICFNTSY-KNGDPELNVIQNYN 184
Query: 286 VEIMELATKFGINELFGFLNKIDLFGNG--KNLKDAMWRYDELIEEIMKGY 334
I++ +K + +L +L +F N + LK + ++L+ +I++ Y
Sbjct: 185 EGIIDNLSKDSLVDLVPWLK---IFPNKTLEKLKSHVKIRNDLLNKILENY 232
>pdb|2PG6|A Chain A, Crystal Structure Of Human Microsomal P450 2a6 L240cN297Q
pdb|2PG6|B Chain B, Crystal Structure Of Human Microsomal P450 2a6 L240cN297Q
pdb|2PG6|C Chain C, Crystal Structure Of Human Microsomal P450 2a6 L240cN297Q
pdb|2PG6|D Chain D, Crystal Structure Of Human Microsomal P450 2a6 L240cN297Q
Length = 476
Score = 45.1 bits (105), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 44/93 (47%), Gaps = 2/93 (2%)
Query: 103 KSRSIDLLPPSPPALPIVG-HLYLLSSKLPESLQTLAHRYGPLMRIRIGASTFFVVSNAT 161
K+ S LPP P LP +G +L L + ++ SL ++ RYGP+ I +G V+
Sbjct: 4 KTSSKGKLPPGPTPLPFIGNYLQLNTEQMYNSLMKISERYGPVFTIHLGPRRVVVLCGHD 63
Query: 162 IAKEIFKTHDISFSSRYESGPSAYNIYRGTGFI 194
+E FS R E + +++G G +
Sbjct: 64 AVREALVDQAEEFSGRGEQATFDW-VFKGYGVV 95
>pdb|3EBS|A Chain A, Human Cytochrome P450 2a6 I208sI300FG301AS369G IN COMPLEX
With Phenacetin
pdb|3EBS|B Chain B, Human Cytochrome P450 2a6 I208sI300FG301AS369G IN COMPLEX
With Phenacetin
pdb|3EBS|C Chain C, Human Cytochrome P450 2a6 I208sI300FG301AS369G IN COMPLEX
With Phenacetin
pdb|3EBS|D Chain D, Human Cytochrome P450 2a6 I208sI300FG301AS369G IN COMPLEX
With Phenacetin
pdb|3T3Q|A Chain A, Human Cytochrome P450 2a6 I208sI300FG301AS369G IN COMPLEX
WITH Pilocarpine
pdb|3T3Q|B Chain B, Human Cytochrome P450 2a6 I208sI300FG301AS369G IN COMPLEX
WITH Pilocarpine
pdb|3T3Q|C Chain C, Human Cytochrome P450 2a6 I208sI300FG301AS369G IN COMPLEX
WITH Pilocarpine
pdb|3T3Q|D Chain D, Human Cytochrome P450 2a6 I208sI300FG301AS369G IN COMPLEX
WITH Pilocarpine
Length = 476
Score = 45.1 bits (105), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 44/93 (47%), Gaps = 2/93 (2%)
Query: 103 KSRSIDLLPPSPPALPIVG-HLYLLSSKLPESLQTLAHRYGPLMRIRIGASTFFVVSNAT 161
K+ S LPP P LP +G +L L + ++ SL ++ RYGP+ I +G V+
Sbjct: 4 KTSSKGKLPPGPTPLPFIGNYLQLNTEQMYNSLMKISERYGPVFTIHLGPRRVVVLCGHD 63
Query: 162 IAKEIFKTHDISFSSRYESGPSAYNIYRGTGFI 194
+E FS R E + +++G G +
Sbjct: 64 AVREALVDQAEEFSGRGEQATFDW-VFKGYGVV 95
>pdb|1Z10|A Chain A, Crystal Structure Of Human Microsomal P450 2a6 With
Coumarin Bound
pdb|1Z10|B Chain B, Crystal Structure Of Human Microsomal P450 2a6 With
Coumarin Bound
pdb|1Z10|C Chain C, Crystal Structure Of Human Microsomal P450 2a6 With
Coumarin Bound
pdb|1Z10|D Chain D, Crystal Structure Of Human Microsomal P450 2a6 With
Coumarin Bound
pdb|1Z11|A Chain A, Crystal Structure Of Human Microsomal P450 2a6 With
Methoxsalen Bound
pdb|1Z11|B Chain B, Crystal Structure Of Human Microsomal P450 2a6 With
Methoxsalen Bound
pdb|1Z11|C Chain C, Crystal Structure Of Human Microsomal P450 2a6 With
Methoxsalen Bound
pdb|1Z11|D Chain D, Crystal Structure Of Human Microsomal P450 2a6 With
Methoxsalen Bound
pdb|2FDU|A Chain A, Microsomal P450 2a6 With The Inhibitor N,N-Dimethyl(5-
(Pyridin-3-Yl)furan-2-Yl)methanamine Bound
pdb|2FDU|B Chain B, Microsomal P450 2a6 With The Inhibitor N,N-Dimethyl(5-
(Pyridin-3-Yl)furan-2-Yl)methanamine Bound
pdb|2FDU|C Chain C, Microsomal P450 2a6 With The Inhibitor N,N-Dimethyl(5-
(Pyridin-3-Yl)furan-2-Yl)methanamine Bound
pdb|2FDU|D Chain D, Microsomal P450 2a6 With The Inhibitor N,N-Dimethyl(5-
(Pyridin-3-Yl)furan-2-Yl)methanamine Bound
pdb|2FDV|A Chain A, Microsomal P450 2a6 With The Inhibitor
N-Methyl(5-(Pyridin- 3-Yl)furan-2-Yl)methanamine Bound
pdb|2FDV|B Chain B, Microsomal P450 2a6 With The Inhibitor
N-Methyl(5-(Pyridin- 3-Yl)furan-2-Yl)methanamine Bound
pdb|2FDV|C Chain C, Microsomal P450 2a6 With The Inhibitor
N-Methyl(5-(Pyridin- 3-Yl)furan-2-Yl)methanamine Bound
pdb|2FDV|D Chain D, Microsomal P450 2a6 With The Inhibitor
N-Methyl(5-(Pyridin- 3-Yl)furan-2-Yl)methanamine Bound
pdb|2FDW|A Chain A, Crystal Structure Of Human Microsomal P450 2a6 With The
Inhibitor (5-(Pyridin-3-Yl)furan-2-Yl)methanamine Bound
pdb|2FDW|B Chain B, Crystal Structure Of Human Microsomal P450 2a6 With The
Inhibitor (5-(Pyridin-3-Yl)furan-2-Yl)methanamine Bound
pdb|2FDW|C Chain C, Crystal Structure Of Human Microsomal P450 2a6 With The
Inhibitor (5-(Pyridin-3-Yl)furan-2-Yl)methanamine Bound
pdb|2FDW|D Chain D, Crystal Structure Of Human Microsomal P450 2a6 With The
Inhibitor (5-(Pyridin-3-Yl)furan-2-Yl)methanamine Bound
pdb|2FDY|A Chain A, Microsomal P450 2a6 With The Inhibitor Adrithiol Bound
pdb|2FDY|B Chain B, Microsomal P450 2a6 With The Inhibitor Adrithiol Bound
pdb|2FDY|C Chain C, Microsomal P450 2a6 With The Inhibitor Adrithiol Bound
pdb|2FDY|D Chain D, Microsomal P450 2a6 With The Inhibitor Adrithiol Bound
pdb|3T3R|A Chain A, Human Cytochrome P450 2a6 In Complex With Pilocarpine
pdb|3T3R|B Chain B, Human Cytochrome P450 2a6 In Complex With Pilocarpine
pdb|3T3R|C Chain C, Human Cytochrome P450 2a6 In Complex With Pilocarpine
pdb|3T3R|D Chain D, Human Cytochrome P450 2a6 In Complex With Pilocarpine
pdb|4EJJ|A Chain A, Human Cytochrome P450 2a6 In Complex With Nicotine
pdb|4EJJ|B Chain B, Human Cytochrome P450 2a6 In Complex With Nicotine
pdb|4EJJ|C Chain C, Human Cytochrome P450 2a6 In Complex With Nicotine
pdb|4EJJ|D Chain D, Human Cytochrome P450 2a6 In Complex With Nicotine
Length = 476
Score = 45.1 bits (105), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 44/93 (47%), Gaps = 2/93 (2%)
Query: 103 KSRSIDLLPPSPPALPIVG-HLYLLSSKLPESLQTLAHRYGPLMRIRIGASTFFVVSNAT 161
K+ S LPP P LP +G +L L + ++ SL ++ RYGP+ I +G V+
Sbjct: 4 KTSSKGKLPPGPTPLPFIGNYLQLNTEQMYNSLMKISERYGPVFTIHLGPRRVVVLCGHD 63
Query: 162 IAKEIFKTHDISFSSRYESGPSAYNIYRGTGFI 194
+E FS R E + +++G G +
Sbjct: 64 AVREALVDQAEEFSGRGEQATFDW-VFKGYGVV 95
>pdb|2P85|A Chain A, Structure Of Human Lung Cytochrome P450 2a13 With Indole
Bound In Two Alternate Conformations
pdb|2P85|B Chain B, Structure Of Human Lung Cytochrome P450 2a13 With Indole
Bound In Two Alternate Conformations
pdb|2P85|C Chain C, Structure Of Human Lung Cytochrome P450 2a13 With Indole
Bound In Two Alternate Conformations
pdb|2P85|D Chain D, Structure Of Human Lung Cytochrome P450 2a13 With Indole
Bound In Two Alternate Conformations
pdb|2P85|E Chain E, Structure Of Human Lung Cytochrome P450 2a13 With Indole
Bound In Two Alternate Conformations
pdb|2P85|F Chain F, Structure Of Human Lung Cytochrome P450 2a13 With Indole
Bound In Two Alternate Conformations
pdb|3T3S|A Chain A, Human Cytochrome P450 2a13 In Complex With Pilocarpine
pdb|3T3S|B Chain B, Human Cytochrome P450 2a13 In Complex With Pilocarpine
pdb|3T3S|C Chain C, Human Cytochrome P450 2a13 In Complex With Pilocarpine
pdb|3T3S|D Chain D, Human Cytochrome P450 2a13 In Complex With Pilocarpine
pdb|3T3S|E Chain E, Human Cytochrome P450 2a13 In Complex With Pilocarpine
pdb|3T3S|F Chain F, Human Cytochrome P450 2a13 In Complex With Pilocarpine
pdb|3T3S|G Chain G, Human Cytochrome P450 2a13 In Complex With Pilocarpine
pdb|3T3S|H Chain H, Human Cytochrome P450 2a13 In Complex With Pilocarpine
pdb|4EJG|A Chain A, Human Cytochrome P450 2a13 In Complex With Nicotine
pdb|4EJG|B Chain B, Human Cytochrome P450 2a13 In Complex With Nicotine
pdb|4EJG|C Chain C, Human Cytochrome P450 2a13 In Complex With Nicotine
pdb|4EJG|D Chain D, Human Cytochrome P450 2a13 In Complex With Nicotine
pdb|4EJG|E Chain E, Human Cytochrome P450 2a13 In Complex With Nicotine
pdb|4EJG|F Chain F, Human Cytochrome P450 2a13 In Complex With Nicotine
pdb|4EJG|G Chain G, Human Cytochrome P450 2a13 In Complex With Nicotine
pdb|4EJG|H Chain H, Human Cytochrome P450 2a13 In Complex With Nicotine
pdb|4EJH|A Chain A, Human Cytochrome P450 2a13 In Complex With
4-(Methylnitrosamino)-1-(3- Pyridyl)-1-Butanone (Nnk)
pdb|4EJH|B Chain B, Human Cytochrome P450 2a13 In Complex With
4-(Methylnitrosamino)-1-(3- Pyridyl)-1-Butanone (Nnk)
pdb|4EJH|C Chain C, Human Cytochrome P450 2a13 In Complex With
4-(Methylnitrosamino)-1-(3- Pyridyl)-1-Butanone (Nnk)
pdb|4EJH|D Chain D, Human Cytochrome P450 2a13 In Complex With
4-(Methylnitrosamino)-1-(3- Pyridyl)-1-Butanone (Nnk)
pdb|4EJH|E Chain E, Human Cytochrome P450 2a13 In Complex With
4-(Methylnitrosamino)-1-(3- Pyridyl)-1-Butanone (Nnk)
pdb|4EJH|F Chain F, Human Cytochrome P450 2a13 In Complex With
4-(Methylnitrosamino)-1-(3- Pyridyl)-1-Butanone (Nnk)
pdb|4EJH|G Chain G, Human Cytochrome P450 2a13 In Complex With
4-(Methylnitrosamino)-1-(3- Pyridyl)-1-Butanone (Nnk)
pdb|4EJH|H Chain H, Human Cytochrome P450 2a13 In Complex With
4-(Methylnitrosamino)-1-(3- Pyridyl)-1-Butanone (Nnk)
pdb|4EJI|A Chain A, Human Cytochrome P450 2a13 In Complex With Two Molecules
Of 4- (Methylnitrosamino)-1-(3-Puridyl)-1-Butanone
Length = 476
Score = 45.1 bits (105), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 42/169 (24%), Positives = 70/169 (41%), Gaps = 4/169 (2%)
Query: 103 KSRSIDLLPPSPPALPIVG-HLYLLSSKLPESLQTLAHRYGPLMRIRIGASTFFVVSNAT 161
K+ S LPP P LP +G +L L + ++ SL ++ RYGP+ I +G V+
Sbjct: 4 KTSSKGKLPPGPTPLPFIGNYLQLNTEQMYNSLMKISERYGPVFTIHLGPRRVVVLCGHD 63
Query: 162 IAKEIFKTHDISFSSRYESGPSAYNIYRGTGFITGPYGAYYRFMRKLCATELFAGPQMDR 221
KE FS R E + +++G G + G + +R+ L R
Sbjct: 64 AVKEALVDQAEEFSGRGEQATFDW-LFKGYG-VAFSNGERAKQLRRFSIATLRGFGVGKR 121
Query: 222 YNKLREQEIERLLKSLMKSSREGKPCDLGLELAAMANNLTFRMIMNKRF 270
+ R QE L ++ + G D L+ +N+ ++ RF
Sbjct: 122 GIEERIQEEAGFLIDALRGT-HGANIDPTFFLSRTVSNVISSIVFGDRF 169
>pdb|1PO5|A Chain A, Structure Of Mammalian Cytochrome P450 2b4
Length = 476
Score = 45.1 bits (105), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 43/169 (25%), Positives = 73/169 (43%), Gaps = 4/169 (2%)
Query: 103 KSRSIDLLPPSPPALPIVGHLYLLSSK-LPESLQTLAHRYGPLMRIRIGASTFFVVSNAT 161
K+ S LPP P LP++G+L + K L S L +YG + + +G+ V+
Sbjct: 4 KTSSKGKLPPGPSPLPVLGNLLQMDRKGLLRSFLRLREKYGDVFTVYLGSRPVVVLCGTD 63
Query: 162 IAKEIFKTHDISFSSRYESGPSAYNIYRGTGFITGPYGAYYRFMRKLCATELFAGPQMDR 221
+E +FS R + I++G G I G +R +R+ + R
Sbjct: 64 AIREALVDQAEAFSGRGKIA-VVDPIFQGYGVIFA-NGERWRALRRFSLATMRDFGMGKR 121
Query: 222 YNKLREQEIERLLKSLMKSSREGKPCDLGLELAAMANNLTFRMIMNKRF 270
+ R QE R L ++ S+ G D L ++ +N+ ++ KRF
Sbjct: 122 SVEERIQEEARCLVEELRKSK-GALLDNTLLFHSITSNIICSIVFGKRF 169
>pdb|2PG7|A Chain A, Crystal Structure Of Human Microsomal P450 2a6 N297qI300V
pdb|2PG7|B Chain B, Crystal Structure Of Human Microsomal P450 2a6 N297qI300V
pdb|2PG7|C Chain C, Crystal Structure Of Human Microsomal P450 2a6 N297qI300V
pdb|2PG7|D Chain D, Crystal Structure Of Human Microsomal P450 2a6 N297qI300V
Length = 476
Score = 45.1 bits (105), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 44/93 (47%), Gaps = 2/93 (2%)
Query: 103 KSRSIDLLPPSPPALPIVG-HLYLLSSKLPESLQTLAHRYGPLMRIRIGASTFFVVSNAT 161
K+ S LPP P LP +G +L L + ++ SL ++ RYGP+ I +G V+
Sbjct: 4 KTSSKGKLPPGPTPLPFIGNYLQLNTEQMYNSLMKISERYGPVFTIHLGPRRVVVLCGHD 63
Query: 162 IAKEIFKTHDISFSSRYESGPSAYNIYRGTGFI 194
+E FS R E + +++G G +
Sbjct: 64 AVREALVDQAEEFSGRGEQATFDW-VFKGYGVV 95
>pdb|2PG5|A Chain A, Crystal Structure Of Human Microsomal P450 2a6 N297q
pdb|2PG5|B Chain B, Crystal Structure Of Human Microsomal P450 2a6 N297q
pdb|2PG5|C Chain C, Crystal Structure Of Human Microsomal P450 2a6 N297q
pdb|2PG5|D Chain D, Crystal Structure Of Human Microsomal P450 2a6 N297q
Length = 476
Score = 45.1 bits (105), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 44/93 (47%), Gaps = 2/93 (2%)
Query: 103 KSRSIDLLPPSPPALPIVG-HLYLLSSKLPESLQTLAHRYGPLMRIRIGASTFFVVSNAT 161
K+ S LPP P LP +G +L L + ++ SL ++ RYGP+ I +G V+
Sbjct: 4 KTSSKGKLPPGPTPLPFIGNYLQLNTEQMYNSLMKISERYGPVFTIHLGPRRVVVLCGHD 63
Query: 162 IAKEIFKTHDISFSSRYESGPSAYNIYRGTGFI 194
+E FS R E + +++G G +
Sbjct: 64 AVREALVDQAEEFSGRGEQATFDW-VFKGYGVV 95
>pdb|1SUO|A Chain A, Structure Of Mammalian Cytochrome P450 2b4 With Bound
4-(4- Chlorophenyl)imidazole
pdb|2BDM|A Chain A, Structure Of Cytochrome P450 2b4 With Bound Bifonazole
pdb|3G5N|A Chain A, Triple Ligand Occupancy Crystal Structure Of Cytochrome
P450 Complex With The Inhibitor
1-Biphenyl-4-Methyl-1h-Imidazole
pdb|3G5N|B Chain B, Triple Ligand Occupancy Crystal Structure Of Cytochrome
P450 Complex With The Inhibitor
1-Biphenyl-4-Methyl-1h-Imidazole
pdb|3G5N|C Chain C, Triple Ligand Occupancy Crystal Structure Of Cytochrome
P450 Complex With The Inhibitor
1-Biphenyl-4-Methyl-1h-Imidazole
pdb|3G5N|D Chain D, Triple Ligand Occupancy Crystal Structure Of Cytochrome
P450 Complex With The Inhibitor
1-Biphenyl-4-Methyl-1h-Imidazole
pdb|3G93|A Chain A, Single Ligand Occupancy Crystal Structure Of Cytochrome
P450 Complex With The Inhibitor
1-Biphenyl-4-Methyl-1h-Imidazole
pdb|3G93|B Chain B, Single Ligand Occupancy Crystal Structure Of Cytochrome
P450 Complex With The Inhibitor
1-Biphenyl-4-Methyl-1h-Imidazole
pdb|3G93|C Chain C, Single Ligand Occupancy Crystal Structure Of Cytochrome
P450 Complex With The Inhibitor
1-Biphenyl-4-Methyl-1h-Imidazole
pdb|3G93|D Chain D, Single Ligand Occupancy Crystal Structure Of Cytochrome
P450 Complex With The Inhibitor
1-Biphenyl-4-Methyl-1h-Imidazole
pdb|3KW4|A Chain A, Crystal Structure Of Cytochrome 2b4 In Complex With The
Anti-Platelet Drug Ticlopidine
pdb|3ME6|A Chain A, Crystal Structure Of Cytochrome 2b4 In Complex With The
Anti-Platelet Drug Clopidogrel
pdb|3ME6|B Chain B, Crystal Structure Of Cytochrome 2b4 In Complex With The
Anti-Platelet Drug Clopidogrel
pdb|3ME6|C Chain C, Crystal Structure Of Cytochrome 2b4 In Complex With The
Anti-Platelet Drug Clopidogrel
pdb|3ME6|D Chain D, Crystal Structure Of Cytochrome 2b4 In Complex With The
Anti-Platelet Drug Clopidogrel
pdb|3MVR|A Chain A, Crystal Structure Of Cytochrome P450 2b4-H226y In A Closed
Conformation
pdb|3MVR|B Chain B, Crystal Structure Of Cytochrome P450 2b4-H226y In A Closed
Conformation
pdb|3R1A|A Chain A, Closed Crystal Structure Of Cytochrome P450 2b4 Covalently
Bound To The Mechanism-Based Inactivator
Tert-Butylphenylacetylene
pdb|3R1A|B Chain B, Closed Crystal Structure Of Cytochrome P450 2b4 Covalently
Bound To The Mechanism-Based Inactivator
Tert-Butylphenylacetylene
pdb|3R1A|C Chain C, Closed Crystal Structure Of Cytochrome P450 2b4 Covalently
Bound To The Mechanism-Based Inactivator
Tert-Butylphenylacetylene
pdb|3R1A|D Chain D, Closed Crystal Structure Of Cytochrome P450 2b4 Covalently
Bound To The Mechanism-Based Inactivator
Tert-Butylphenylacetylene
pdb|3R1A|E Chain E, Closed Crystal Structure Of Cytochrome P450 2b4 Covalently
Bound To The Mechanism-Based Inactivator
Tert-Butylphenylacetylene
pdb|3R1A|F Chain F, Closed Crystal Structure Of Cytochrome P450 2b4 Covalently
Bound To The Mechanism-Based Inactivator
Tert-Butylphenylacetylene
pdb|3R1A|G Chain G, Closed Crystal Structure Of Cytochrome P450 2b4 Covalently
Bound To The Mechanism-Based Inactivator
Tert-Butylphenylacetylene
pdb|3R1A|H Chain H, Closed Crystal Structure Of Cytochrome P450 2b4 Covalently
Bound To The Mechanism-Based Inactivator
Tert-Butylphenylacetylene
pdb|3R1B|A Chain A, Open Crystal Structure Of Cytochrome P450 2b4 Covalently
Bound To The Mechanism-Based Inactivator
Tert-Butylphenylacetylene
pdb|3R1B|B Chain B, Open Crystal Structure Of Cytochrome P450 2b4 Covalently
Bound To The Mechanism-Based Inactivator
Tert-Butylphenylacetylene
pdb|3R1B|C Chain C, Open Crystal Structure Of Cytochrome P450 2b4 Covalently
Bound To The Mechanism-Based Inactivator
Tert-Butylphenylacetylene
pdb|3R1B|D Chain D, Open Crystal Structure Of Cytochrome P450 2b4 Covalently
Bound To The Mechanism-Based Inactivator
Tert-Butylphenylacetylene
pdb|3TMZ|A Chain A, Crystal Structure Of P450 2b4(H226y) In Complex With
Amlodipine
pdb|3UAS|A Chain A, Cytochrome P450 2b4 Covalently Bound To The
Mechanism-based Inactivator 9-ethynylphenanthrene
Length = 476
Score = 45.1 bits (105), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 43/169 (25%), Positives = 73/169 (43%), Gaps = 4/169 (2%)
Query: 103 KSRSIDLLPPSPPALPIVGHLYLLSSK-LPESLQTLAHRYGPLMRIRIGASTFFVVSNAT 161
K+ S LPP P LP++G+L + K L S L +YG + + +G+ V+
Sbjct: 4 KTSSKGKLPPGPSPLPVLGNLLQMDRKGLLRSFLRLREKYGDVFTVYLGSRPVVVLCGTD 63
Query: 162 IAKEIFKTHDISFSSRYESGPSAYNIYRGTGFITGPYGAYYRFMRKLCATELFAGPQMDR 221
+E +FS R + I++G G I G +R +R+ + R
Sbjct: 64 AIREALVDQAEAFSGRGKIA-VVDPIFQGYGVIFA-NGERWRALRRFSLATMRDFGMGKR 121
Query: 222 YNKLREQEIERLLKSLMKSSREGKPCDLGLELAAMANNLTFRMIMNKRF 270
+ R QE R L ++ S+ G D L ++ +N+ ++ KRF
Sbjct: 122 SVEERIQEEARCLVEELRKSK-GALLDNTLLFHSITSNIICSIVFGKRF 169
>pdb|4H1N|A Chain A, Crystal Structure Of P450 2b4 F297a Mutant In Complex With
Anti- Platelet Drug Clopidogrel
Length = 479
Score = 45.1 bits (105), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 43/169 (25%), Positives = 73/169 (43%), Gaps = 4/169 (2%)
Query: 103 KSRSIDLLPPSPPALPIVGHLYLLSSK-LPESLQTLAHRYGPLMRIRIGASTFFVVSNAT 161
K+ S LPP P LP++G+L + K L S L +YG + + +G+ V+
Sbjct: 4 KTSSKGKLPPGPSPLPVLGNLLQMDRKGLLRSFLRLREKYGDVFTVYLGSRPVVVLCGTD 63
Query: 162 IAKEIFKTHDISFSSRYESGPSAYNIYRGTGFITGPYGAYYRFMRKLCATELFAGPQMDR 221
+E +FS R + I++G G I G +R +R+ + R
Sbjct: 64 AIREALVDQAEAFSGRGKIA-VVDPIFQGYGVIFA-NGERWRALRRFSLATMRDFGMGKR 121
Query: 222 YNKLREQEIERLLKSLMKSSREGKPCDLGLELAAMANNLTFRMIMNKRF 270
+ R QE R L ++ S+ G D L ++ +N+ ++ KRF
Sbjct: 122 SVEERIQEEARCLVEELRKSK-GALLDNTLLFHSITSNIICSIVFGKRF 169
>pdb|2Q6N|A Chain A, Structure Of Cytochrome P450 2b4 With Bound 1-(4-
Cholorophenyl)imidazole
pdb|2Q6N|B Chain B, Structure Of Cytochrome P450 2b4 With Bound 1-(4-
Cholorophenyl)imidazole
pdb|2Q6N|C Chain C, Structure Of Cytochrome P450 2b4 With Bound 1-(4-
Cholorophenyl)imidazole
pdb|2Q6N|D Chain D, Structure Of Cytochrome P450 2b4 With Bound 1-(4-
Cholorophenyl)imidazole
pdb|2Q6N|E Chain E, Structure Of Cytochrome P450 2b4 With Bound 1-(4-
Cholorophenyl)imidazole
pdb|2Q6N|F Chain F, Structure Of Cytochrome P450 2b4 With Bound 1-(4-
Cholorophenyl)imidazole
pdb|2Q6N|G Chain G, Structure Of Cytochrome P450 2b4 With Bound 1-(4-
Cholorophenyl)imidazole
Length = 478
Score = 44.7 bits (104), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 43/169 (25%), Positives = 73/169 (43%), Gaps = 4/169 (2%)
Query: 103 KSRSIDLLPPSPPALPIVGHLYLLSSK-LPESLQTLAHRYGPLMRIRIGASTFFVVSNAT 161
K+ S LPP P LP++G+L + K L S L +YG + + +G+ V+
Sbjct: 4 KTSSKGKLPPGPSPLPVLGNLLQMDRKGLLRSFLRLREKYGDVFTVYLGSRPVVVLCGTD 63
Query: 162 IAKEIFKTHDISFSSRYESGPSAYNIYRGTGFITGPYGAYYRFMRKLCATELFAGPQMDR 221
+E +FS R + I++G G I G +R +R+ + R
Sbjct: 64 AIREALVDQAEAFSGRGKIA-VVDPIFQGYGVIFA-NGERWRALRRFSLATMRDFGMGKR 121
Query: 222 YNKLREQEIERLLKSLMKSSREGKPCDLGLELAAMANNLTFRMIMNKRF 270
+ R QE R L ++ S+ G D L ++ +N+ ++ KRF
Sbjct: 122 SVEERIQEEARCLVEELRKSK-GALLDNTLLFHSITSNIICSIVFGKRF 169
>pdb|3TK3|A Chain A, Cytochrome P450 2b4 Mutant L437a In Complex With
4-(4-Chlorophenyl) Imidazole
pdb|3TK3|B Chain B, Cytochrome P450 2b4 Mutant L437a In Complex With
4-(4-Chlorophenyl) Imidazole
pdb|3TK3|C Chain C, Cytochrome P450 2b4 Mutant L437a In Complex With
4-(4-Chlorophenyl) Imidazole
pdb|3TK3|D Chain D, Cytochrome P450 2b4 Mutant L437a In Complex With
4-(4-Chlorophenyl) Imidazole
Length = 476
Score = 44.7 bits (104), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 43/169 (25%), Positives = 73/169 (43%), Gaps = 4/169 (2%)
Query: 103 KSRSIDLLPPSPPALPIVGHLYLLSSK-LPESLQTLAHRYGPLMRIRIGASTFFVVSNAT 161
K+ S LPP P LP++G+L + K L S L +YG + + +G+ V+
Sbjct: 4 KTSSKGKLPPGPSPLPVLGNLLQMDRKGLLRSFLRLREKYGDVFTVYLGSRPVVVLCGTD 63
Query: 162 IAKEIFKTHDISFSSRYESGPSAYNIYRGTGFITGPYGAYYRFMRKLCATELFAGPQMDR 221
+E +FS R + I++G G I G +R +R+ + R
Sbjct: 64 AIREALVDQAEAFSGRGKIA-VVDPIFQGYGVIFA-NGERWRALRRFSLATMRDFGMGKR 121
Query: 222 YNKLREQEIERLLKSLMKSSREGKPCDLGLELAAMANNLTFRMIMNKRF 270
+ R QE R L ++ S+ G D L ++ +N+ ++ KRF
Sbjct: 122 SVEERIQEEARCLVEELRKSK-GALLDNTLLFHSITSNIICSIVFGKRF 169
>pdb|3QZ1|A Chain A, Crystal Structure Of Bovine Steroid Of 21-Hydroxylase
(P450c21)
pdb|3QZ1|B Chain B, Crystal Structure Of Bovine Steroid Of 21-Hydroxylase
(P450c21)
pdb|3QZ1|C Chain C, Crystal Structure Of Bovine Steroid Of 21-Hydroxylase
(P450c21)
pdb|3QZ1|D Chain D, Crystal Structure Of Bovine Steroid Of 21-Hydroxylase
(P450c21)
Length = 496
Score = 44.7 bits (104), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 47/218 (21%), Positives = 89/218 (40%), Gaps = 21/218 (9%)
Query: 114 PPALPIVGHLYLLSSKLPESLQTLAHRYGPLMRIRIGASTFFVVSNATIAKEIFKTHDIS 173
PP +P G L+LL LP L +L + GP+ R+R+G V+++ +E +
Sbjct: 31 PPLVP--GFLHLLQPNLPIHLLSLTQKLGPVYRLRLGLQEVVVLNSKRTIEEAMIRKWVD 88
Query: 174 FSSRYESGPSAYNIYRGTGFITGPYGAYYRFMRKLCATELFAGPQ--MDRY-NKLREQEI 230
F+ R + R G Y ++ +KL + L G + M+ + ++L ++
Sbjct: 89 FAGRPQIPSYKLVSQRCQDISLGDYSLLWKAHKKLTRSALLLGTRSSMEPWVDQLTQEFC 148
Query: 231 ERLLKSLMKSSREGKPCDLGLELAAMANNLTFRMIMNKRFCENNGSEAKRMRDSIVEIME 290
ER+ + G P + E + LT +I F + D + ++M+
Sbjct: 149 ERM------RVQAGAPVTIQKEFSL----LTCSIICYLTFGNKEDTLVHAFHDCVQDLMK 198
Query: 291 LATKFGINELFGFLNKIDLFGNGKNLKDAMWRYDELIE 328
+ I ++ + + F N +WR + IE
Sbjct: 199 TWDHWSI-QILDMVPFLRFFPN-----PGLWRLKQAIE 230
>pdb|4I8V|A Chain A, Human Cytochrome P450 1a1 In Complex With
Alpha-naphthoflavone
pdb|4I8V|B Chain B, Human Cytochrome P450 1a1 In Complex With
Alpha-naphthoflavone
pdb|4I8V|C Chain C, Human Cytochrome P450 1a1 In Complex With
Alpha-naphthoflavone
pdb|4I8V|D Chain D, Human Cytochrome P450 1a1 In Complex With
Alpha-naphthoflavone
Length = 491
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 18/67 (26%), Positives = 33/67 (49%)
Query: 111 PPSPPALPIVGHLYLLSSKLPESLQTLAHRYGPLMRIRIGASTFFVVSNATIAKEIFKTH 170
PP P P++GH+ L +L ++ +YG +++IRIG++ V+S ++
Sbjct: 13 PPGPWGWPLIGHMLTLGKNPHLALSRMSQQYGDVLQIRIGSTPVVVLSGLDTIRQALVRQ 72
Query: 171 DISFSSR 177
F R
Sbjct: 73 GDDFKGR 79
>pdb|2HI4|A Chain A, Crystal Structure Of Human Microsomal P450 1a2 In Complex
With Alpha-Naphthoflavone
Length = 495
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 33/67 (49%)
Query: 111 PPSPPALPIVGHLYLLSSKLPESLQTLAHRYGPLMRIRIGASTFFVVSNATIAKEIFKTH 170
PP P P++GH+ L +L ++ RYG +++IRIG++ V+S ++
Sbjct: 18 PPEPWGWPLLGHVLTLGKNPHLALSRMSQRYGDVLQIRIGSTPVLVLSRLDTIRQALVRQ 77
Query: 171 DISFSSR 177
F R
Sbjct: 78 GDDFKGR 84
>pdb|3PM0|A Chain A, Structural Characterization Of The Complex Between Alpha-
Naphthoflavone And Human Cytochrome P450 1b1 (Cyp1b1)
Length = 507
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/97 (24%), Positives = 42/97 (43%), Gaps = 1/97 (1%)
Query: 111 PPSPPALPIVGHLYLLSSKLPESLQTLAHRYGPLMRIRIGASTFFVVSNATIAKEIFKTH 170
PP P A P++G+ + S LA RYG + +IR+G+ V++ +
Sbjct: 11 PPGPFAWPLIGNAAAVGQAAHLSFARLARRYGDVFQIRLGSCPIVVLNGERAIHQALVQQ 70
Query: 171 DISFSSRYESGPSAYNIYRGTGFITGPYGAYYRFMRK 207
+F+ R S S + G G Y +++ R+
Sbjct: 71 GSAFADR-PSFASFRVVSGGRSMAFGHYSEHWKVQRR 106
>pdb|1YJ7|A Chain A, Crystal Structure Of Enteropathogenic E.Coli (Epec) Type
Iii Secretion System Protein Escj
pdb|1YJ7|B Chain B, Crystal Structure Of Enteropathogenic E.Coli (Epec) Type
Iii Secretion System Protein Escj
pdb|1YJ7|C Chain C, Crystal Structure Of Enteropathogenic E.Coli (Epec) Type
Iii Secretion System Protein Escj
pdb|1YJ7|D Chain D, Crystal Structure Of Enteropathogenic E.Coli (Epec) Type
Iii Secretion System Protein Escj
Length = 171
Score = 32.7 bits (73), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 34/147 (23%), Positives = 62/147 (42%), Gaps = 16/147 (10%)
Query: 153 TFFVVSNATIAKEIFKTHDISFSSRYESGPSAYNIYRGTGFITGPYGAYYRFMRKLCATE 212
+ ++ ++KE+ K+ +++ S A I GF P + ++
Sbjct: 19 ALLLSNDVNVSKEMDKSGNMTLSVAAADFVRAITILNNNGF---PKKKFADIEVIFPPSQ 75
Query: 213 LFAGPQMD--RYNKLREQEIERLLK----------SLMKSSREGKPCDLG-LELAAMANN 259
L A P + + N L+EQ+IERLL SL ++ E +P L +++ N
Sbjct: 76 LVASPSQENAKINYLKEQDIERLLSKIPGVIDCSVSLNVNNNESQPSSAAVLVISSPEVN 135
Query: 260 LTFRMIMNKRFCENNGSEAKRMRDSIV 286
L +I K +N+ + K S+V
Sbjct: 136 LAPSVIQIKNLVKNSVDDLKLENISVV 162
>pdb|1SDM|A Chain A, Crystal Structure Of Kinesin-Like Calmodulin Binding
Protein
pdb|3CNZ|A Chain A, Structural Dynamics Of The Microtubule Binding And
Regulatory Elements In The Kinesin-Like Calmodulin
Binding Protein
pdb|3CNZ|B Chain B, Structural Dynamics Of The Microtubule Binding And
Regulatory Elements In The Kinesin-Like Calmodulin
Binding Protein
pdb|3COB|A Chain A, Structural Dynamics Of The Microtubule Binding And
Regulatory Elements In The Kinesin-Like Calmodulin
Binding Protein
pdb|3COB|C Chain C, Structural Dynamics Of The Microtubule Binding And
Regulatory Elements In The Kinesin-Like Calmodulin
Binding Protein
Length = 369
Score = 32.0 bits (71), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 30/62 (48%), Gaps = 5/62 (8%)
Query: 22 SVKPFTVSFFWANHWSIKHMIDRVIASTSVKETRFDKENCYTILKESLVNGF--CHLGHP 79
SV FTV W + + +HM DRV + ++ F+ L +S V+G+ C +
Sbjct: 31 SVDEFTVEHLWKDDKAKQHMYDRVFDGNATQDDVFEDTK---YLVQSAVDGYNVCIFAYG 87
Query: 80 ET 81
+T
Sbjct: 88 QT 89
>pdb|1D8V|A Chain A, The Restrained And Minimized Average Nmr Structure Of
Map30
Length = 263
Score = 30.4 bits (67), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 17/37 (45%), Positives = 24/37 (64%), Gaps = 2/37 (5%)
Query: 167 FKTHDISFSSRYESGPSAYNI-YRGTGFITGPYGAYY 202
++T D+S+ + ES P AYNI ++GT IT PY Y
Sbjct: 74 YRTRDVSYFFK-ESPPEAYNILFKGTRKITLPYTGNY 109
>pdb|1CF5|A Chain A, Beta-Momorcharin Structure At 2.55 A
pdb|1CF5|B Chain B, Beta-Momorcharin Structure At 2.55 A
Length = 249
Score = 30.4 bits (67), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 17/37 (45%), Positives = 24/37 (64%), Gaps = 2/37 (5%)
Query: 167 FKTHDISFSSRYESGPSAYNI-YRGTGFITGPYGAYY 202
++T D+S+ + ES P AYNI ++GT IT PY Y
Sbjct: 74 YRTRDVSYFFK-ESPPEAYNILFKGTRKITLPYTGNY 109
>pdb|3PVL|A Chain A, Structure Of Myosin Viia Myth4-Ferm-Sh3 In Complex With
The Cen1 Of Sans
Length = 655
Score = 30.0 bits (66), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 22/106 (20%), Positives = 50/106 (47%), Gaps = 9/106 (8%)
Query: 231 ERLLKSLMKSSREGKPCDLGLELAAMANN------LTFRMIMNKRFCENNGSEAKRMRDS 284
ERL ++ + +R P LEL A + +TF K ++ + A+ + ++
Sbjct: 235 ERLRRTFVNGTRTQPPS--WLELQATKSKKPIMLPVTFMDGTTKTLLTDSATTARELCNA 292
Query: 285 IVEIMELATKFGINELFGFLNKIDLFGNGKN-LKDAMWRYDELIEE 329
+ + + L +FG + +K+ G+G + + DA+ + ++ +E
Sbjct: 293 LADKISLKDRFGFSLYIALFDKVSSLGSGSDHVMDAISQCEQYAKE 338
>pdb|3C6G|A Chain A, Crystal Structure Of Cyp2r1 In Complex With Vitamin D3
pdb|3C6G|B Chain B, Crystal Structure Of Cyp2r1 In Complex With Vitamin D3
pdb|3DL9|A Chain A, Crystal Structure Of Cyp2r1 In Complex With
1-Alpha-Hydroxy- Vitamin D2
pdb|3DL9|B Chain B, Crystal Structure Of Cyp2r1 In Complex With
1-Alpha-Hydroxy- Vitamin D2
Length = 479
Score = 28.5 bits (62), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 45/213 (21%), Positives = 88/213 (41%), Gaps = 12/213 (5%)
Query: 127 SSKLPES-LQTLAHRYGPLMRIRIGASTFFVVSNATIAKEIFKTHDISFSSRYESGPSAY 185
SS+LP ++ + YG + + +G + V++ + KE F+ R P
Sbjct: 32 SSELPHVYMRKQSQVYGEIFSLDLGGISTVVLNGYDVVKECLVHQSEIFADR-PCLPLFM 90
Query: 186 NIYRGTGFITGPYGAYYRFMRKLCATEL--FAGPQMDRYNKLREQEIERLLKSLMKSSRE 243
+ + G + YG + R+L F Q +K+ E+ + +++ +
Sbjct: 91 KMTKMGGLLNSRYGRGWVDHRRLAVNSFRYFGYGQKSFESKILEET--KFFNDAIETYK- 147
Query: 244 GKPCDLGLELAAMANNLTFRMIMNKRFCENNGSEAKRMRDSIVEIMELATKFGINELFGF 303
G+P D + +N+T +I +RF + ++ + M + E +ELA + L+
Sbjct: 148 GRPFDFKQLITNAVSNITNLIIFGERFTYED-TDFQHMIELFSENVELAASASVF-LYNA 205
Query: 304 LNKIDLFGNGKN---LKDAMWRYDELIEEIMKG 333
I + GK+ ++A YD L I K
Sbjct: 206 FPWIGILPFGKHQQLFRNAAVVYDFLSRLIEKA 238
>pdb|3CZH|A Chain A, Crystal Structure Of Cyp2r1 In Complex With Vitamin D2
pdb|3CZH|B Chain B, Crystal Structure Of Cyp2r1 In Complex With Vitamin D2
Length = 481
Score = 28.5 bits (62), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 45/213 (21%), Positives = 88/213 (41%), Gaps = 12/213 (5%)
Query: 127 SSKLPES-LQTLAHRYGPLMRIRIGASTFFVVSNATIAKEIFKTHDISFSSRYESGPSAY 185
SS+LP ++ + YG + + +G + V++ + KE F+ R P
Sbjct: 32 SSELPHVYMRKQSQVYGEIFSLDLGGISTVVLNGYDVVKECLVHQSEIFADR-PCLPLFM 90
Query: 186 NIYRGTGFITGPYGAYYRFMRKLCATEL--FAGPQMDRYNKLREQEIERLLKSLMKSSRE 243
+ + G + YG + R+L F Q +K+ E+ + +++ +
Sbjct: 91 KMTKMGGLLNSRYGRGWVDHRRLAVNSFRYFGYGQKSFESKILEET--KFFNDAIETYK- 147
Query: 244 GKPCDLGLELAAMANNLTFRMIMNKRFCENNGSEAKRMRDSIVEIMELATKFGINELFGF 303
G+P D + +N+T +I +RF + ++ + M + E +ELA + L+
Sbjct: 148 GRPFDFKQLITNAVSNITNLIIFGERFTYED-TDFQHMIELFSENVELAASASVF-LYNA 205
Query: 304 LNKIDLFGNGKN---LKDAMWRYDELIEEIMKG 333
I + GK+ ++A YD L I K
Sbjct: 206 FPWIGILPFGKHQQLFRNAAVVYDFLSRLIEKA 238
>pdb|1VG0|A Chain A, The Crystal Structures Of The Rep-1 Protein In Complex
With Monoprenylated Rab7 Protein
pdb|1VG9|A Chain A, The Crystal Structures Of The Rep-1 Protein In Complex
With C-Terminally Truncated Rab7 Protein
pdb|1VG9|C Chain C, The Crystal Structures Of The Rep-1 Protein In Complex
With C-Terminally Truncated Rab7 Protein
pdb|1VG9|E Chain E, The Crystal Structures Of The Rep-1 Protein In Complex
With C-Terminally Truncated Rab7 Protein
pdb|1VG9|G Chain G, The Crystal Structures Of The Rep-1 Protein In Complex
With C-Terminally Truncated Rab7 Protein
Length = 650
Score = 28.1 bits (61), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 15/57 (26%), Positives = 24/57 (42%)
Query: 137 LAHRYGPLMRIRIGASTFFVVSNATIAKEIFKTHDISFSSRYESGPSAYNIYRGTGF 193
LA R G + ++ + F T+ ++ ++F YE P Y Y GT F
Sbjct: 261 LAFREGTVEQVPCSRADVFNSKQLTMVEKRMLMKFLTFCVEYEEHPDEYRAYEGTTF 317
>pdb|1LTX|R Chain R, Structure Of Rab Escort Protein-1 In Complex With Rab
Geranylgeranyl Transferase And Isoprenoid
Length = 650
Score = 28.1 bits (61), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 15/57 (26%), Positives = 24/57 (42%)
Query: 137 LAHRYGPLMRIRIGASTFFVVSNATIAKEIFKTHDISFSSRYESGPSAYNIYRGTGF 193
LA R G + ++ + F T+ ++ ++F YE P Y Y GT F
Sbjct: 261 LAFREGTVEQVPCSRADVFNSKQLTMVEKRMLMKFLTFCVEYEEHPDEYRAYEGTTF 317
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.138 0.414
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,550,549
Number of Sequences: 62578
Number of extensions: 403581
Number of successful extensions: 815
Number of sequences better than 100.0: 41
Number of HSP's better than 100.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 25
Number of HSP's that attempted gapping in prelim test: 792
Number of HSP's gapped (non-prelim): 41
length of query: 376
length of database: 14,973,337
effective HSP length: 100
effective length of query: 276
effective length of database: 8,715,537
effective search space: 2405488212
effective search space used: 2405488212
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 52 (24.6 bits)