Query 047321
Match_columns 807
No_of_seqs 499 out of 3919
Neff 9.5
Searched_HMMs 46136
Date Fri Mar 29 09:59:09 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047321.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/047321hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4658 Apoptotic ATPase [Sign 100.0 1E-75 2.2E-80 680.8 39.6 705 1-776 71-846 (889)
2 PLN03210 Resistant to P. syrin 100.0 2.5E-60 5.5E-65 583.4 46.8 657 59-795 133-905 (1153)
3 PF00931 NB-ARC: NB-ARC domain 100.0 7.2E-44 1.6E-48 376.5 14.7 278 109-395 1-285 (287)
4 PLN00113 leucine-rich repeat r 99.7 3.7E-18 8.1E-23 210.9 12.4 303 467-797 69-394 (968)
5 PLN00113 leucine-rich repeat r 99.7 4.9E-18 1.1E-22 209.8 10.0 305 467-798 140-467 (968)
6 KOG0444 Cytoskeletal regulator 99.7 1.5E-18 3.3E-23 183.4 -4.2 256 467-795 103-374 (1255)
7 PLN03210 Resistant to P. syrin 99.6 3.8E-15 8.2E-20 184.5 17.3 274 466-776 588-910 (1153)
8 KOG0444 Cytoskeletal regulator 99.6 6.2E-17 1.4E-21 171.4 -4.6 112 672-796 240-352 (1255)
9 KOG0472 Leucine-rich repeat pr 99.5 1.3E-15 2.8E-20 154.2 -4.1 290 467-798 206-543 (565)
10 KOG4194 Membrane glycoprotein 99.5 8.2E-15 1.8E-19 154.9 1.2 288 465-799 76-432 (873)
11 PRK04841 transcriptional regul 99.5 5.7E-12 1.2E-16 155.1 26.3 293 103-445 13-332 (903)
12 PRK15387 E3 ubiquitin-protein 99.4 5.5E-13 1.2E-17 153.5 12.7 101 676-799 361-461 (788)
13 PRK00411 cdc6 cell division co 99.4 1.4E-10 3.1E-15 128.2 27.7 317 102-435 28-375 (394)
14 KOG0618 Serine/threonine phosp 99.3 2.9E-14 6.4E-19 158.8 -5.7 196 580-794 258-487 (1081)
15 TIGR03015 pepcterm_ATPase puta 99.3 2E-10 4.4E-15 119.9 22.7 183 130-317 42-242 (269)
16 KOG0472 Leucine-rich repeat pr 99.3 2.8E-14 6.2E-19 144.6 -7.4 111 671-797 200-311 (565)
17 KOG4194 Membrane glycoprotein 99.3 8.8E-13 1.9E-17 139.8 0.1 269 467-798 173-460 (873)
18 TIGR02928 orc1/cdc6 family rep 99.2 2.9E-09 6.2E-14 116.5 27.1 301 102-421 13-351 (365)
19 PRK15387 E3 ubiquitin-protein 99.2 5.6E-11 1.2E-15 137.1 13.6 235 466-779 221-465 (788)
20 PF01637 Arch_ATPase: Archaeal 99.2 1.2E-10 2.6E-15 118.9 11.7 195 106-312 1-233 (234)
21 PRK15370 E3 ubiquitin-protein 99.2 4.9E-11 1.1E-15 138.5 9.4 102 676-797 324-429 (754)
22 PRK00080 ruvB Holliday junctio 99.1 3.9E-10 8.5E-15 120.7 12.6 275 104-419 25-309 (328)
23 TIGR00635 ruvB Holliday juncti 99.1 1.4E-09 3.1E-14 115.7 15.4 268 104-419 4-288 (305)
24 COG2909 MalT ATP-dependent tra 99.1 1.2E-08 2.6E-13 114.5 22.1 298 103-447 18-340 (894)
25 KOG0617 Ras suppressor protein 99.0 5E-12 1.1E-16 113.9 -4.9 144 581-783 51-196 (264)
26 KOG0617 Ras suppressor protein 99.0 7E-12 1.5E-16 112.9 -5.5 155 582-797 29-187 (264)
27 KOG0618 Serine/threonine phosp 99.0 2.7E-11 5.9E-16 135.6 -2.7 107 675-796 217-323 (1081)
28 PF05729 NACHT: NACHT domain 99.0 4.2E-09 9.2E-14 101.1 12.3 143 132-280 1-163 (166)
29 PRK06893 DNA replication initi 98.9 7.1E-08 1.5E-12 97.4 17.0 155 130-315 38-205 (229)
30 KOG4658 Apoptotic ATPase [Sign 98.9 1.4E-09 3E-14 128.6 4.6 126 466-598 570-729 (889)
31 PRK15370 E3 ubiquitin-protein 98.8 3.8E-09 8.3E-14 122.9 7.3 226 466-771 198-427 (754)
32 PTZ00112 origin recognition co 98.8 6E-07 1.3E-11 101.9 23.3 215 102-318 753-987 (1164)
33 COG2256 MGS1 ATPase related to 98.8 6.1E-08 1.3E-12 100.2 12.9 175 100-309 26-208 (436)
34 PRK13342 recombination factor 98.8 2.6E-07 5.6E-12 102.1 18.5 178 104-315 12-198 (413)
35 COG3899 Predicted ATPase [Gene 98.7 5E-07 1.1E-11 107.5 17.3 314 106-445 2-386 (849)
36 PF13401 AAA_22: AAA domain; P 98.7 7.9E-08 1.7E-12 88.2 8.3 118 130-249 3-125 (131)
37 cd00116 LRR_RI Leucine-rich re 98.6 2.9E-09 6.2E-14 114.3 -1.9 261 482-798 15-293 (319)
38 TIGR03420 DnaA_homol_Hda DnaA 98.6 9.4E-07 2E-11 89.6 15.5 169 110-315 23-203 (226)
39 PRK04195 replication factor C 98.6 3.6E-06 7.9E-11 94.9 21.1 248 104-394 14-271 (482)
40 PRK05564 DNA polymerase III su 98.6 1.9E-06 4.2E-11 91.7 17.9 179 104-312 4-189 (313)
41 PRK14961 DNA polymerase III su 98.6 3.2E-06 6.9E-11 91.7 19.5 191 104-311 16-218 (363)
42 PRK14963 DNA polymerase III su 98.6 3.6E-07 7.7E-12 102.2 11.9 197 104-310 14-214 (504)
43 cd00009 AAA The AAA+ (ATPases 98.6 5.4E-07 1.2E-11 84.3 11.3 125 107-251 1-131 (151)
44 PF05496 RuvB_N: Holliday junc 98.5 6.5E-07 1.4E-11 86.7 11.5 182 104-318 24-226 (233)
45 COG1474 CDC6 Cdc6-related prot 98.5 7.9E-06 1.7E-10 87.6 20.7 207 104-314 17-239 (366)
46 PTZ00202 tuzin; Provisional 98.5 4.7E-06 1E-10 88.1 18.2 169 97-279 255-433 (550)
47 PF13191 AAA_16: AAA ATPase do 98.5 1.5E-07 3.2E-12 92.2 6.9 47 105-154 1-47 (185)
48 PRK07003 DNA polymerase III su 98.5 2.6E-06 5.6E-11 96.5 16.9 196 104-315 16-223 (830)
49 PRK12402 replication factor C 98.5 3.1E-06 6.6E-11 91.6 17.3 196 104-312 15-225 (337)
50 PRK14949 DNA polymerase III su 98.5 2.7E-06 5.9E-11 98.3 17.2 194 104-313 16-220 (944)
51 PRK14960 DNA polymerase III su 98.5 4E-06 8.6E-11 94.1 17.2 192 104-311 15-217 (702)
52 KOG4237 Extracellular matrix p 98.5 1.3E-08 2.8E-13 104.0 -2.2 278 464-802 64-365 (498)
53 PRK08727 hypothetical protein; 98.5 7.2E-06 1.6E-10 83.0 17.4 149 131-310 41-201 (233)
54 TIGR02903 spore_lon_C ATP-depe 98.5 3.5E-06 7.6E-11 97.1 16.8 202 104-316 154-398 (615)
55 PF13173 AAA_14: AAA domain 98.5 9.6E-07 2.1E-11 80.4 9.7 119 131-271 2-126 (128)
56 PLN03025 replication factor C 98.4 3.4E-06 7.5E-11 89.9 15.2 182 104-310 13-197 (319)
57 PRK06645 DNA polymerase III su 98.4 6.1E-06 1.3E-10 91.9 17.6 194 104-310 21-226 (507)
58 PRK12323 DNA polymerase III su 98.4 3.9E-06 8.4E-11 93.9 15.6 199 104-313 16-225 (700)
59 PRK00440 rfc replication facto 98.4 7.5E-06 1.6E-10 87.8 17.6 181 104-311 17-201 (319)
60 cd01128 rho_factor Transcripti 98.4 4.2E-07 9.1E-12 91.9 7.3 90 130-220 15-113 (249)
61 PRK08084 DNA replication initi 98.4 1.1E-05 2.3E-10 81.9 16.8 154 130-314 44-210 (235)
62 PRK14962 DNA polymerase III su 98.4 1E-05 2.2E-10 89.8 17.6 187 104-317 14-223 (472)
63 PRK14956 DNA polymerase III su 98.4 1.5E-06 3.2E-11 94.8 10.6 191 104-310 18-219 (484)
64 PRK14957 DNA polymerase III su 98.4 9.3E-06 2E-10 91.1 17.2 187 104-317 16-225 (546)
65 KOG0989 Replication factor C, 98.4 2.6E-06 5.7E-11 85.1 11.3 183 104-307 36-224 (346)
66 KOG2028 ATPase related to the 98.4 3.2E-06 6.9E-11 85.8 12.0 159 128-308 159-331 (554)
67 PRK13341 recombination factor 98.4 5.4E-06 1.2E-10 96.4 15.0 172 104-308 28-212 (725)
68 TIGR02397 dnaX_nterm DNA polym 98.3 2.8E-05 6E-10 84.8 19.7 183 104-314 14-219 (355)
69 PRK14964 DNA polymerase III su 98.3 1.6E-05 3.5E-10 87.9 17.2 180 104-310 13-214 (491)
70 PRK07994 DNA polymerase III su 98.3 1E-05 2.2E-10 92.2 15.8 194 104-313 16-220 (647)
71 PRK14951 DNA polymerase III su 98.3 1.4E-05 3E-10 90.9 16.6 196 104-312 16-224 (618)
72 cd00116 LRR_RI Leucine-rich re 98.3 9.6E-08 2.1E-12 102.5 -0.7 272 468-795 24-319 (319)
73 PRK14958 DNA polymerase III su 98.3 1.4E-05 3E-10 89.8 16.2 181 104-311 16-218 (509)
74 PRK05642 DNA replication initi 98.3 3.6E-05 7.8E-10 78.0 17.7 154 131-315 45-210 (234)
75 PRK08691 DNA polymerase III su 98.3 1.4E-05 3E-10 90.7 15.9 192 104-311 16-218 (709)
76 PRK07471 DNA polymerase III su 98.3 3.4E-05 7.3E-10 83.0 18.2 193 104-313 19-238 (365)
77 PRK08903 DnaA regulatory inact 98.3 2.4E-05 5.1E-10 79.3 16.3 153 130-317 41-203 (227)
78 TIGR00678 holB DNA polymerase 98.3 3.1E-05 6.7E-10 75.9 16.5 91 209-309 95-187 (188)
79 PRK05896 DNA polymerase III su 98.3 2.5E-05 5.5E-10 87.7 17.6 196 104-315 16-223 (605)
80 PRK09087 hypothetical protein; 98.3 1.3E-05 2.8E-10 80.4 13.9 142 130-312 43-194 (226)
81 PRK09112 DNA polymerase III su 98.3 2.2E-05 4.8E-10 83.9 16.1 196 103-313 22-240 (351)
82 PF05621 TniB: Bacterial TniB 98.3 4.8E-05 1E-09 77.5 17.5 203 104-310 34-258 (302)
83 PRK14955 DNA polymerase III su 98.3 1.7E-05 3.8E-10 87.0 15.6 198 104-311 16-226 (397)
84 PRK15386 type III secretion pr 98.3 2.8E-06 6.1E-11 90.4 8.7 119 581-769 47-187 (426)
85 PRK07940 DNA polymerase III su 98.2 3.1E-05 6.8E-10 83.9 17.0 180 104-313 5-213 (394)
86 COG3903 Predicted ATPase [Gene 98.2 3.9E-06 8.5E-11 87.7 9.5 268 130-418 13-290 (414)
87 PF00308 Bac_DnaA: Bacterial d 98.2 3.9E-05 8.4E-10 76.7 16.3 184 106-314 11-209 (219)
88 KOG0532 Leucine-rich repeat (L 98.2 3.3E-08 7.1E-13 105.7 -6.1 132 630-798 117-249 (722)
89 PRK09376 rho transcription ter 98.2 3.4E-06 7.4E-11 88.8 8.0 101 114-220 157-266 (416)
90 PRK14969 DNA polymerase III su 98.2 3.4E-05 7.3E-10 87.4 15.9 183 104-316 16-224 (527)
91 PRK09111 DNA polymerase III su 98.2 7E-05 1.5E-09 85.5 18.4 197 104-313 24-233 (598)
92 PRK14087 dnaA chromosomal repl 98.2 7.1E-05 1.5E-09 83.1 17.8 168 130-315 140-321 (450)
93 PRK14959 DNA polymerase III su 98.1 7.6E-05 1.6E-09 84.4 17.6 199 104-318 16-226 (624)
94 TIGR01242 26Sp45 26S proteasom 98.1 2.1E-05 4.6E-10 85.6 12.9 178 104-307 122-328 (364)
95 PRK14954 DNA polymerase III su 98.1 9.6E-05 2.1E-09 84.5 18.5 202 104-314 16-230 (620)
96 PRK14952 DNA polymerase III su 98.1 0.00012 2.5E-09 83.2 19.0 199 104-318 13-225 (584)
97 PRK14950 DNA polymerase III su 98.1 4.9E-05 1.1E-09 87.6 16.3 195 104-313 16-221 (585)
98 KOG2227 Pre-initiation complex 98.1 6.6E-05 1.4E-09 79.5 15.3 179 101-281 147-339 (529)
99 PRK07764 DNA polymerase III su 98.1 7.5E-05 1.6E-09 88.2 17.4 198 104-317 15-226 (824)
100 PRK07133 DNA polymerase III su 98.1 0.00015 3.3E-09 83.3 19.0 193 104-314 18-221 (725)
101 PRK14970 DNA polymerase III su 98.1 0.00015 3.3E-09 79.2 18.4 178 104-310 17-206 (367)
102 COG1136 SalX ABC-type antimicr 98.1 4E-05 8.6E-10 75.3 12.3 128 130-257 30-210 (226)
103 COG2884 FtsE Predicted ATPase 98.1 4.6E-05 1E-09 71.0 11.9 125 130-258 27-205 (223)
104 PRK14953 DNA polymerase III su 98.0 0.00023 5E-09 79.6 18.9 183 104-313 16-220 (486)
105 PRK15386 type III secretion pr 98.0 3.7E-06 8E-11 89.6 4.4 12 784-795 157-168 (426)
106 TIGR00767 rho transcription te 98.0 2.3E-05 5E-10 83.2 9.9 91 130-221 167-266 (415)
107 PF14580 LRR_9: Leucine-rich r 98.0 2E-06 4.3E-11 81.7 1.5 60 675-742 62-124 (175)
108 PRK11331 5-methylcytosine-spec 98.0 2.9E-05 6.4E-10 83.8 10.5 120 104-235 175-298 (459)
109 PF14516 AAA_35: AAA-like doma 98.0 0.00064 1.4E-08 72.7 20.6 202 102-320 9-246 (331)
110 PRK08451 DNA polymerase III su 98.0 0.0003 6.6E-09 78.7 18.6 194 104-313 14-218 (535)
111 PRK14948 DNA polymerase III su 98.0 0.00035 7.6E-09 80.4 19.6 196 104-313 16-222 (620)
112 PHA02544 44 clamp loader, smal 98.0 0.00015 3.3E-09 77.5 15.1 146 104-278 21-171 (316)
113 TIGR00362 DnaA chromosomal rep 98.0 0.00037 8E-09 77.1 18.6 159 131-311 136-308 (405)
114 PRK14971 DNA polymerase III su 97.9 0.00038 8.2E-09 80.1 18.8 176 104-310 17-219 (614)
115 KOG3207 Beta-tubulin folding c 97.9 2.8E-06 6.1E-11 88.6 1.3 16 582-597 168-183 (505)
116 cd03214 ABC_Iron-Siderophores_ 97.9 0.00012 2.5E-09 71.2 12.6 124 130-257 24-165 (180)
117 KOG1259 Nischarin, modulator o 97.9 1.1E-06 2.5E-11 86.7 -1.5 131 632-799 282-415 (490)
118 PRK06305 DNA polymerase III su 97.9 0.0005 1.1E-08 76.4 19.0 183 104-314 17-224 (451)
119 COG1126 GlnQ ABC-type polar am 97.9 0.00016 3.4E-09 69.2 12.6 126 130-258 27-204 (240)
120 KOG2543 Origin recognition com 97.9 0.00049 1.1E-08 71.2 17.1 166 102-278 4-191 (438)
121 PF14580 LRR_9: Leucine-rich r 97.9 5.9E-06 1.3E-10 78.5 3.1 106 675-796 17-126 (175)
122 KOG4237 Extracellular matrix p 97.9 6.2E-07 1.4E-11 92.0 -3.7 57 466-528 90-148 (498)
123 KOG0532 Leucine-rich repeat (L 97.9 3.8E-07 8.2E-12 97.7 -5.6 146 467-654 75-231 (722)
124 KOG3207 Beta-tubulin folding c 97.9 6.1E-06 1.3E-10 86.1 3.3 112 466-597 120-233 (505)
125 PRK06620 hypothetical protein; 97.9 0.00063 1.4E-08 67.7 17.5 135 132-311 45-187 (214)
126 TIGR02639 ClpA ATP-dependent C 97.9 0.00013 2.8E-09 86.6 14.8 155 105-280 183-358 (731)
127 PRK07399 DNA polymerase III su 97.9 0.00046 1E-08 72.8 17.0 196 104-313 4-221 (314)
128 PF05673 DUF815: Protein of un 97.9 0.00023 5E-09 70.3 13.6 124 100-250 23-150 (249)
129 cd03222 ABC_RNaseL_inhibitor T 97.9 0.00011 2.4E-09 70.5 11.3 107 130-257 24-139 (177)
130 CHL00181 cbbX CbbX; Provisiona 97.9 0.00052 1.1E-08 71.6 17.1 136 131-282 59-211 (287)
131 cd03223 ABCD_peroxisomal_ALDP 97.9 0.00016 3.6E-09 69.0 12.2 120 130-254 26-152 (166)
132 cd03247 ABCC_cytochrome_bd The 97.9 0.00012 2.7E-09 70.9 11.4 115 130-254 27-161 (178)
133 PRK06647 DNA polymerase III su 97.9 0.0007 1.5E-08 77.1 18.8 192 104-311 16-218 (563)
134 TIGR02880 cbbX_cfxQ probable R 97.9 0.00045 9.7E-09 72.1 16.0 134 132-281 59-209 (284)
135 TIGR03345 VI_ClpV1 type VI sec 97.9 8.4E-05 1.8E-09 88.9 12.0 180 105-306 188-389 (852)
136 cd03238 ABC_UvrA The excision 97.9 0.00012 2.7E-09 70.1 10.9 123 130-264 20-161 (176)
137 cd03228 ABCC_MRP_Like The MRP 97.9 0.00017 3.7E-09 69.3 12.0 123 130-255 27-160 (171)
138 KOG1259 Nischarin, modulator o 97.8 3E-06 6.4E-11 83.8 -0.4 130 584-776 282-415 (490)
139 KOG2120 SCF ubiquitin ligase, 97.8 7.4E-07 1.6E-11 88.1 -4.6 144 550-743 226-375 (419)
140 cd03221 ABCF_EF-3 ABCF_EF-3 E 97.8 0.00018 3.9E-09 66.8 11.6 108 130-256 25-133 (144)
141 PRK14965 DNA polymerase III su 97.8 0.00038 8.3E-09 79.9 16.4 197 104-316 16-224 (576)
142 PRK14088 dnaA chromosomal repl 97.8 0.0004 8.8E-09 77.1 16.0 159 131-310 130-302 (440)
143 cd03216 ABC_Carb_Monos_I This 97.8 0.00012 2.6E-09 69.7 10.2 120 130-256 25-148 (163)
144 CHL00095 clpC Clp protease ATP 97.8 0.00028 6.1E-09 84.8 15.6 154 105-279 180-353 (821)
145 COG0593 DnaA ATPase involved i 97.8 0.0013 2.9E-08 70.5 18.9 139 130-285 112-262 (408)
146 COG1120 FepC ABC-type cobalami 97.8 0.00013 2.8E-09 73.3 10.6 129 130-258 27-207 (258)
147 PRK14086 dnaA chromosomal repl 97.8 0.0012 2.6E-08 74.5 19.4 158 131-310 314-485 (617)
148 PRK03992 proteasome-activating 97.8 0.00021 4.7E-09 78.1 13.2 177 104-306 131-336 (389)
149 COG1121 ZnuC ABC-type Mn/Zn tr 97.8 0.00011 2.4E-09 73.4 9.8 127 130-256 29-205 (254)
150 COG3267 ExeA Type II secretory 97.8 0.0018 3.9E-08 63.8 17.6 198 111-316 34-248 (269)
151 PRK05563 DNA polymerase III su 97.8 0.0012 2.6E-08 75.5 19.2 192 104-311 16-218 (559)
152 PRK00149 dnaA chromosomal repl 97.8 0.0007 1.5E-08 75.9 17.1 159 130-310 147-319 (450)
153 TIGR02881 spore_V_K stage V sp 97.8 0.00034 7.4E-09 72.3 13.4 161 105-281 7-192 (261)
154 PRK12422 chromosomal replicati 97.8 0.0019 4E-08 71.7 19.9 154 131-306 141-306 (445)
155 cd03230 ABC_DR_subfamily_A Thi 97.8 0.00024 5.2E-09 68.5 11.4 121 130-256 25-161 (173)
156 COG2255 RuvB Holliday junction 97.8 0.00027 5.9E-09 70.2 11.7 179 104-315 26-225 (332)
157 cd03246 ABCC_Protease_Secretio 97.8 0.00018 3.8E-09 69.4 10.2 122 130-254 27-160 (173)
158 COG4608 AppF ABC-type oligopep 97.7 0.00029 6.3E-09 70.4 11.1 126 130-258 38-178 (268)
159 COG0396 sufC Cysteine desulfur 97.7 0.00048 1E-08 66.6 12.1 133 130-262 29-216 (251)
160 COG4886 Leucine-rich repeat (L 97.7 4E-05 8.7E-10 84.8 5.7 193 472-748 98-294 (394)
161 cd03229 ABC_Class3 This class 97.7 0.00015 3.3E-09 70.2 8.8 124 130-256 25-167 (178)
162 smart00382 AAA ATPases associa 97.7 0.00034 7.4E-09 64.5 10.7 87 132-222 3-90 (148)
163 PRK05707 DNA polymerase III su 97.7 0.0014 3E-08 69.6 16.2 97 209-313 105-203 (328)
164 PRK08116 hypothetical protein; 97.7 0.00023 5E-09 73.4 10.1 103 132-249 115-220 (268)
165 TIGR00602 rad24 checkpoint pro 97.6 0.00039 8.4E-09 79.5 12.4 200 104-308 84-318 (637)
166 cd03215 ABC_Carb_Monos_II This 97.6 0.00043 9.3E-09 67.3 11.2 120 130-257 25-171 (182)
167 PF00004 AAA: ATPase family as 97.6 0.00018 3.8E-09 65.8 8.0 96 134-249 1-111 (132)
168 cd03226 ABC_cobalt_CbiO_domain 97.6 0.00057 1.2E-08 67.9 12.2 128 130-257 25-193 (205)
169 cd03235 ABC_Metallic_Cations A 97.6 0.0004 8.6E-09 69.6 11.0 59 199-257 139-199 (213)
170 PRK11034 clpA ATP-dependent Cl 97.6 0.00074 1.6E-08 79.3 14.6 155 105-280 187-362 (758)
171 cd03263 ABC_subfamily_A The AB 97.6 0.00051 1.1E-08 69.2 11.6 57 200-256 141-198 (220)
172 PF13855 LRR_8: Leucine rich r 97.6 5.6E-05 1.2E-09 58.6 3.5 58 707-769 1-59 (61)
173 COG1124 DppF ABC-type dipeptid 97.6 0.0007 1.5E-08 66.2 11.7 129 130-258 32-210 (252)
174 cd03298 ABC_ThiQ_thiamine_tran 97.6 0.00031 6.7E-09 70.2 9.7 59 199-257 135-196 (211)
175 cd03293 ABC_NrtD_SsuB_transpor 97.6 0.0007 1.5E-08 68.2 12.2 127 130-256 29-198 (220)
176 TIGR03346 chaperone_ClpB ATP-d 97.6 0.00093 2E-08 80.7 15.2 154 105-280 174-349 (852)
177 PTZ00361 26 proteosome regulat 97.6 0.00053 1.1E-08 75.2 11.9 157 105-281 184-368 (438)
178 cd00267 ABC_ATPase ABC (ATP-bi 97.6 0.00029 6.4E-09 66.7 8.8 119 130-256 24-146 (157)
179 cd03225 ABC_cobalt_CbiO_domain 97.6 0.00017 3.7E-09 72.1 7.5 61 197-257 139-201 (211)
180 cd03245 ABCC_bacteriocin_expor 97.6 0.00082 1.8E-08 67.7 12.4 57 198-254 146-203 (220)
181 cd03259 ABC_Carb_Solutes_like 97.6 0.00076 1.7E-08 67.5 12.1 60 197-256 135-197 (213)
182 KOG4341 F-box protein containi 97.6 7.6E-06 1.7E-10 84.9 -2.4 122 675-800 318-443 (483)
183 cd03269 ABC_putative_ATPase Th 97.6 0.00099 2.1E-08 66.5 12.8 56 201-256 137-194 (210)
184 cd03369 ABCC_NFT1 Domain 2 of 97.6 0.0013 2.8E-08 65.4 13.6 60 196-255 129-189 (207)
185 cd03217 ABC_FeS_Assembly ABC-t 97.6 0.00053 1.1E-08 67.8 10.6 123 130-255 25-169 (200)
186 COG1116 TauB ABC-type nitrate/ 97.6 0.0011 2.3E-08 65.5 12.4 127 130-258 28-199 (248)
187 PRK11248 tauB taurine transpor 97.6 0.00076 1.6E-08 69.5 12.1 59 199-257 135-196 (255)
188 cd03264 ABC_drug_resistance_li 97.5 0.00076 1.6E-08 67.4 11.8 61 197-257 135-196 (211)
189 PF13855 LRR_8: Leucine rich r 97.5 0.00011 2.3E-09 57.0 4.3 60 731-795 1-61 (61)
190 PRK13539 cytochrome c biogenes 97.5 0.00071 1.5E-08 67.3 11.4 136 130-268 27-202 (207)
191 COG1117 PstB ABC-type phosphat 97.5 0.0006 1.3E-08 65.1 9.9 60 199-258 156-216 (253)
192 TIGR00960 3a0501s02 Type II (G 97.5 0.00021 4.6E-09 71.7 7.6 61 197-257 143-205 (216)
193 cd03237 ABC_RNaseL_inhibitor_d 97.5 0.00062 1.3E-08 69.5 11.0 129 130-258 24-184 (246)
194 PRK10865 protein disaggregatio 97.5 0.0012 2.7E-08 79.3 15.2 43 105-153 179-221 (857)
195 cd03232 ABC_PDR_domain2 The pl 97.5 0.00059 1.3E-08 67.0 10.5 120 130-251 32-169 (192)
196 cd03255 ABC_MJ0796_Lo1CDE_FtsE 97.5 0.00022 4.8E-09 71.7 7.6 56 199-254 147-205 (218)
197 cd03265 ABC_DrrA DrrA is the A 97.5 0.001 2.3E-08 66.9 12.5 58 200-257 139-199 (220)
198 TIGR01188 drrA daunorubicin re 97.5 0.00021 4.6E-09 75.6 7.6 59 199-257 131-191 (302)
199 COG1131 CcmA ABC-type multidru 97.5 0.00099 2.1E-08 69.8 12.5 128 130-257 30-204 (293)
200 PRK13538 cytochrome c biogenes 97.5 0.00099 2.1E-08 66.1 11.9 61 198-258 135-197 (204)
201 cd03297 ABC_ModC_molybdenum_tr 97.5 0.001 2.2E-08 66.7 12.0 61 196-256 135-198 (214)
202 TIGR03522 GldA_ABC_ATP gliding 97.5 0.0012 2.6E-08 69.7 13.2 58 200-257 141-199 (301)
203 PRK11247 ssuB aliphatic sulfon 97.5 0.0012 2.5E-08 68.0 12.6 128 130-257 37-201 (257)
204 PRK09544 znuC high-affinity zi 97.5 0.00089 1.9E-08 68.7 11.8 128 130-257 29-188 (251)
205 TIGR03771 anch_rpt_ABC anchore 97.5 0.00092 2E-08 67.4 11.7 59 199-257 120-180 (223)
206 TIGR03864 PQQ_ABC_ATP ABC tran 97.5 0.00085 1.8E-08 68.3 11.6 63 200-264 140-205 (236)
207 cd03266 ABC_NatA_sodium_export 97.5 0.0012 2.7E-08 66.2 12.6 57 200-256 144-202 (218)
208 PRK10536 hypothetical protein; 97.5 0.00072 1.6E-08 67.7 10.5 135 104-250 55-213 (262)
209 COG4886 Leucine-rich repeat (L 97.5 0.0001 2.2E-09 81.6 5.0 175 467-725 116-295 (394)
210 PLN03150 hypothetical protein; 97.5 8.9E-05 1.9E-09 86.3 4.6 109 678-797 419-529 (623)
211 PRK13540 cytochrome c biogenes 97.5 0.00081 1.8E-08 66.5 10.9 126 130-255 26-192 (200)
212 cd03301 ABC_MalK_N The N-termi 97.5 0.0012 2.6E-08 66.1 12.2 59 199-257 137-198 (213)
213 TIGR03740 galliderm_ABC gallid 97.5 0.0014 2.9E-08 66.2 12.6 58 200-257 132-191 (223)
214 cd03224 ABC_TM1139_LivF_branch 97.5 0.0011 2.3E-08 66.9 11.9 58 200-257 140-199 (222)
215 PRK13537 nodulation ABC transp 97.5 0.00094 2E-08 70.7 11.8 58 200-257 146-205 (306)
216 PRK10771 thiQ thiamine transpo 97.5 0.00055 1.2E-08 69.5 9.8 58 200-257 137-197 (232)
217 cd03261 ABC_Org_Solvent_Resist 97.5 0.0013 2.8E-08 67.0 12.5 61 197-257 141-204 (235)
218 PRK08769 DNA polymerase III su 97.5 0.0029 6.4E-08 66.5 15.3 95 209-313 112-208 (319)
219 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 97.5 0.0011 2.4E-08 66.8 11.8 125 130-257 47-209 (224)
220 cd03251 ABCC_MsbA MsbA is an e 97.5 0.0019 4E-08 65.8 13.6 66 197-264 143-209 (234)
221 cd03213 ABCG_EPDR ABCG transpo 97.5 0.0011 2.3E-08 65.2 11.4 119 130-251 34-172 (194)
222 cd03258 ABC_MetN_methionine_tr 97.5 0.001 2.2E-08 67.7 11.5 60 198-257 146-208 (233)
223 cd03244 ABCC_MRP_domain2 Domai 97.5 0.002 4.3E-08 64.9 13.6 59 197-255 144-203 (221)
224 cd03231 ABC_CcmA_heme_exporter 97.5 0.001 2.2E-08 65.9 11.2 124 130-253 25-188 (201)
225 cd03268 ABC_BcrA_bacitracin_re 97.4 0.0011 2.4E-08 66.0 11.4 58 200-257 134-193 (208)
226 TIGR01277 thiQ thiamine ABC tr 97.4 0.0011 2.4E-08 66.3 11.5 56 200-255 136-194 (213)
227 cd03254 ABCC_Glucan_exporter_l 97.4 0.0016 3.6E-08 65.9 12.8 59 197-255 144-203 (229)
228 PLN03150 hypothetical protein; 97.4 0.00012 2.5E-09 85.4 4.9 99 667-776 432-532 (623)
229 cd03218 ABC_YhbG The ABC trans 97.4 0.00097 2.1E-08 67.7 11.1 59 199-257 140-200 (232)
230 PRK13647 cbiO cobalt transport 97.4 0.0012 2.5E-08 68.9 11.9 61 197-257 143-205 (274)
231 PRK13543 cytochrome c biogenes 97.4 0.0017 3.7E-08 64.9 12.6 128 130-257 36-204 (214)
232 TIGR01166 cbiO cobalt transpor 97.4 0.00097 2.1E-08 65.4 10.5 53 199-251 134-188 (190)
233 PRK14247 phosphate ABC transpo 97.4 0.0015 3.3E-08 67.2 12.4 58 199-256 153-211 (250)
234 PRK10247 putative ABC transpor 97.4 0.0016 3.5E-08 65.7 12.4 64 199-264 144-210 (225)
235 TIGR02324 CP_lyasePhnL phospho 97.4 0.0027 5.8E-08 64.1 13.9 65 199-264 156-222 (224)
236 cd03253 ABCC_ATM1_transporter 97.4 0.0016 3.4E-08 66.4 12.3 59 197-255 142-201 (236)
237 PTZ00454 26S protease regulato 97.4 0.0014 3E-08 71.4 12.3 177 105-306 146-350 (398)
238 cd03250 ABCC_MRP_domain1 Domai 97.4 0.0028 6.2E-08 62.9 13.7 125 130-255 30-193 (204)
239 TIGR02673 FtsE cell division A 97.4 0.0018 3.8E-08 64.9 12.3 59 198-256 143-203 (214)
240 PRK09580 sufC cysteine desulfu 97.4 0.0017 3.7E-08 66.7 12.4 61 196-256 149-211 (248)
241 PRK06090 DNA polymerase III su 97.4 0.006 1.3E-07 64.2 16.4 93 209-313 107-201 (319)
242 cd03219 ABC_Mj1267_LivG_branch 97.4 0.00044 9.6E-09 70.5 7.9 58 200-257 151-210 (236)
243 PRK08058 DNA polymerase III su 97.4 0.0033 7.1E-08 67.2 14.7 162 105-278 6-180 (329)
244 TIGR02314 ABC_MetN D-methionin 97.4 0.0011 2.4E-08 70.9 11.0 62 197-258 145-209 (343)
245 PRK15056 manganese/iron transp 97.4 0.0016 3.5E-08 67.8 12.1 62 197-258 147-210 (272)
246 cd03292 ABC_FtsE_transporter F 97.4 0.0016 3.4E-08 65.3 11.7 58 199-256 143-202 (214)
247 PRK10908 cell division protein 97.4 0.00054 1.2E-08 69.0 8.3 60 198-257 143-204 (222)
248 PF04665 Pox_A32: Poxvirus A32 97.4 0.00082 1.8E-08 67.0 9.3 37 131-169 13-49 (241)
249 PRK11650 ugpC glycerol-3-phosp 97.4 0.00043 9.4E-09 74.6 7.9 129 130-258 29-203 (356)
250 PRK13650 cbiO cobalt transport 97.4 0.0012 2.6E-08 69.0 11.0 58 197-254 145-205 (279)
251 COG1373 Predicted ATPase (AAA+ 97.4 0.0027 5.9E-08 69.5 14.2 118 133-275 39-162 (398)
252 cd03252 ABCC_Hemolysin The ABC 97.4 0.0019 4.1E-08 65.9 12.3 57 199-255 145-202 (237)
253 cd03295 ABC_OpuCA_Osmoprotecti 97.4 0.0012 2.7E-08 67.4 10.9 58 200-257 143-203 (242)
254 PRK06871 DNA polymerase III su 97.4 0.0088 1.9E-07 63.1 17.3 94 208-310 105-200 (325)
255 PRK14269 phosphate ABC transpo 97.4 0.0023 4.9E-08 65.7 12.8 61 196-256 146-207 (246)
256 cd03267 ABC_NatA_like Similar 97.4 0.0018 4E-08 65.8 12.0 58 200-257 161-221 (236)
257 cd03249 ABC_MTABC3_MDL1_MDL2 M 97.4 0.0019 4.1E-08 65.9 12.1 56 199-254 146-202 (238)
258 TIGR01184 ntrCD nitrate transp 97.3 0.0015 3.2E-08 66.2 11.0 60 198-257 120-182 (230)
259 cd03296 ABC_CysA_sulfate_impor 97.3 0.00058 1.3E-08 69.7 8.1 57 200-256 144-203 (239)
260 PRK11000 maltose/maltodextrin 97.3 0.0018 3.9E-08 70.4 12.3 128 130-257 28-201 (369)
261 KOG0991 Replication factor C, 97.3 0.0021 4.5E-08 61.9 11.0 44 104-153 27-70 (333)
262 PRK11629 lolD lipoprotein tran 97.3 0.00058 1.3E-08 69.4 8.0 58 199-256 152-212 (233)
263 TIGR02211 LolD_lipo_ex lipopro 97.3 0.0023 4.9E-08 64.5 12.2 57 199-255 148-207 (221)
264 COG0488 Uup ATPase components 97.3 0.00054 1.2E-08 77.0 8.2 134 130-266 347-511 (530)
265 COG0488 Uup ATPase components 97.3 0.002 4.3E-08 72.5 12.7 61 196-258 157-218 (530)
266 PRK14250 phosphate ABC transpo 97.3 0.0014 3.1E-08 66.9 10.7 61 197-257 136-199 (241)
267 PF13177 DNA_pol3_delta2: DNA 97.3 0.0037 8E-08 59.3 12.8 139 108-268 1-162 (162)
268 PRK13536 nodulation factor exp 97.3 0.00049 1.1E-08 73.7 7.5 60 199-258 179-240 (340)
269 COG4181 Predicted ABC-type tra 97.3 0.0042 9E-08 57.2 12.1 85 174-258 122-215 (228)
270 cd03236 ABC_RNaseL_inhibitor_d 97.3 0.0025 5.5E-08 65.4 12.4 59 199-257 146-206 (255)
271 TIGR03608 L_ocin_972_ABC putat 97.3 0.0022 4.8E-08 63.8 11.7 58 197-254 139-198 (206)
272 COG3840 ThiQ ABC-type thiamine 97.3 0.0033 7.1E-08 58.5 11.5 125 130-257 24-197 (231)
273 PRK13545 tagH teichoic acids e 97.3 0.0031 6.8E-08 70.0 13.7 125 130-257 49-210 (549)
274 TIGR02639 ClpA ATP-dependent C 97.3 0.0019 4.2E-08 76.7 13.1 121 104-237 454-580 (731)
275 PRK11432 fbpC ferric transport 97.3 0.00055 1.2E-08 73.6 7.7 63 195-257 139-204 (351)
276 TIGR01288 nodI ATP-binding ABC 97.3 0.0021 4.6E-08 68.0 12.0 58 200-257 143-202 (303)
277 TIGR01978 sufC FeS assembly AT 97.3 0.0029 6.3E-08 64.7 12.7 60 197-256 149-210 (243)
278 PRK11153 metN DL-methionine tr 97.3 0.0022 4.9E-08 69.0 12.3 61 197-257 145-208 (343)
279 cd03256 ABC_PhnC_transporter A 97.3 0.002 4.3E-08 65.9 11.4 61 197-257 149-212 (241)
280 PRK10584 putative ABC transpor 97.3 0.0028 6E-08 64.2 12.4 58 198-255 152-212 (228)
281 PRK13648 cbiO cobalt transport 97.3 0.0022 4.8E-08 66.7 11.8 59 196-254 146-207 (269)
282 PRK11144 modC molybdate transp 97.3 0.003 6.4E-08 68.3 13.2 129 130-258 23-197 (352)
283 PRK10851 sulfate/thiosulfate t 97.3 0.00084 1.8E-08 72.3 8.9 63 196-258 140-205 (353)
284 TIGR01189 ccmA heme ABC export 97.3 0.0028 6.1E-08 62.6 12.0 52 199-250 134-187 (198)
285 cd03294 ABC_Pro_Gly_Bertaine T 97.3 0.0027 5.9E-08 66.0 12.4 61 196-256 164-227 (269)
286 PRK11300 livG leucine/isoleuci 97.3 0.0026 5.7E-08 65.6 12.3 59 199-257 160-221 (255)
287 TIGR00968 3a0106s01 sulfate AB 97.3 0.00062 1.3E-08 69.4 7.4 58 200-257 138-198 (237)
288 PRK10418 nikD nickel transport 97.3 0.0039 8.3E-08 64.3 13.4 61 196-256 144-207 (254)
289 PRK14265 phosphate ABC transpo 97.3 0.0027 5.9E-08 66.1 12.3 67 197-264 166-233 (274)
290 cd03233 ABC_PDR_domain1 The pl 97.3 0.0031 6.7E-08 62.4 12.1 122 130-251 32-181 (202)
291 PRK09493 glnQ glutamine ABC tr 97.3 0.0026 5.7E-08 64.9 12.0 58 200-257 144-203 (240)
292 COG2274 SunT ABC-type bacterio 97.3 0.0024 5.2E-08 74.5 12.9 61 196-256 613-674 (709)
293 PRK08181 transposase; Validate 97.3 0.00075 1.6E-08 69.2 7.8 101 132-250 107-209 (269)
294 CHL00176 ftsH cell division pr 97.3 0.0046 9.9E-08 71.4 15.1 177 104-305 183-386 (638)
295 PRK14259 phosphate ABC transpo 97.3 0.0032 7E-08 65.4 12.8 67 198-265 160-227 (269)
296 TIGR03411 urea_trans_UrtD urea 97.3 0.0032 6.8E-08 64.4 12.5 61 197-257 148-209 (242)
297 cd03278 ABC_SMC_barmotin Barmo 97.3 0.0029 6.4E-08 62.2 11.6 46 209-254 134-180 (197)
298 PRK13409 putative ATPase RIL; 97.3 0.0021 4.6E-08 74.2 12.3 135 130-265 364-528 (590)
299 PRK13640 cbiO cobalt transport 97.3 0.0018 3.9E-08 67.8 10.8 58 197-254 148-208 (282)
300 PRK11264 putative amino-acid A 97.3 0.0032 6.9E-08 64.7 12.5 59 199-257 151-211 (250)
301 PRK11124 artP arginine transpo 97.3 0.0033 7.2E-08 64.3 12.5 59 199-257 148-208 (242)
302 TIGR02142 modC_ABC molybdenum 97.3 0.0031 6.8E-08 68.2 12.9 62 196-257 135-199 (354)
303 PRK13541 cytochrome c biogenes 97.3 0.0015 3.3E-08 64.3 9.6 55 199-253 130-186 (195)
304 TIGR02770 nickel_nikD nickel i 97.2 0.0038 8.3E-08 63.2 12.8 61 197-257 130-193 (230)
305 PRK13652 cbiO cobalt transport 97.2 0.00072 1.6E-08 70.6 7.6 61 196-256 141-204 (277)
306 COG1135 AbcC ABC-type metal io 97.2 0.0022 4.7E-08 65.0 10.5 61 198-258 147-210 (339)
307 cd03248 ABCC_TAP TAP, the Tran 97.2 0.0036 7.8E-08 63.3 12.5 66 197-264 155-221 (226)
308 COG1119 ModF ABC-type molybden 97.2 0.0018 3.9E-08 63.5 9.6 74 178-251 151-234 (257)
309 cd03262 ABC_HisP_GlnQ_permease 97.2 0.003 6.4E-08 63.2 11.8 60 197-256 140-201 (213)
310 PRK13548 hmuV hemin importer A 97.2 0.0014 3.1E-08 67.6 9.7 60 198-257 140-208 (258)
311 KOG2120 SCF ubiquitin ligase, 97.2 7.8E-06 1.7E-10 81.0 -6.6 63 705-770 311-374 (419)
312 cd03300 ABC_PotA_N PotA is an 97.2 0.0029 6.2E-08 64.2 11.7 60 197-256 135-197 (232)
313 PRK14268 phosphate ABC transpo 97.2 0.0032 7E-08 65.0 12.3 60 198-257 160-220 (258)
314 cd03260 ABC_PstB_phosphate_tra 97.2 0.0026 5.6E-08 64.4 11.3 60 198-257 147-207 (227)
315 COG2812 DnaX DNA polymerase II 97.2 0.00037 8.1E-09 77.0 5.5 189 104-308 16-215 (515)
316 TIGR03258 PhnT 2-aminoethylpho 97.2 0.0027 5.9E-08 68.6 12.0 63 196-258 141-207 (362)
317 COG4618 ArpD ABC-type protease 97.2 0.0035 7.6E-08 67.6 12.4 58 200-257 480-539 (580)
318 PRK10895 lipopolysaccharide AB 97.2 0.0012 2.7E-08 67.4 9.1 57 200-256 145-203 (241)
319 PRK11831 putative ABC transpor 97.2 0.0021 4.5E-08 66.9 10.8 57 200-256 151-210 (269)
320 PRK09452 potA putrescine/sperm 97.2 0.0008 1.7E-08 72.9 7.9 63 196-258 148-213 (375)
321 COG0542 clpA ATP-binding subun 97.2 0.00081 1.8E-08 77.4 8.3 124 104-237 491-620 (786)
322 PF10443 RNA12: RNA12 protein; 97.2 0.018 4E-07 61.7 17.7 211 109-332 1-298 (431)
323 cd03289 ABCC_CFTR2 The CFTR su 97.2 0.0047 1E-07 64.1 13.3 57 199-255 145-202 (275)
324 PRK06921 hypothetical protein; 97.2 0.0019 4.1E-08 66.6 10.2 100 130-249 116-224 (266)
325 PRK10619 histidine/lysine/argi 97.2 0.0035 7.7E-08 64.7 12.4 60 198-257 158-219 (257)
326 TIGR02315 ABC_phnC phosphonate 97.2 0.0025 5.3E-08 65.3 11.1 58 199-256 152-212 (243)
327 PRK14249 phosphate ABC transpo 97.2 0.0045 9.8E-08 63.6 13.1 58 200-257 155-213 (251)
328 PRK12377 putative replication 97.2 0.00088 1.9E-08 67.8 7.6 101 131-248 101-204 (248)
329 PRK13643 cbiO cobalt transport 97.2 0.0041 9E-08 65.2 12.9 61 196-256 148-210 (288)
330 PRK10744 pstB phosphate transp 97.2 0.0033 7.2E-08 65.0 12.1 61 197-257 161-222 (260)
331 cd03283 ABC_MutS-like MutS-lik 97.2 0.0026 5.7E-08 62.6 10.7 22 132-153 26-47 (199)
332 TIGR03265 PhnT2 putative 2-ami 97.2 0.00066 1.4E-08 73.1 6.9 129 130-258 29-203 (353)
333 PRK10865 protein disaggregatio 97.2 0.0034 7.3E-08 75.6 13.6 124 104-237 568-697 (857)
334 PRK14246 phosphate ABC transpo 97.2 0.0039 8.3E-08 64.3 12.3 59 199-257 160-219 (257)
335 TIGR03345 VI_ClpV1 type VI sec 97.2 0.00087 1.9E-08 80.3 8.4 125 104-237 566-695 (852)
336 PF01695 IstB_IS21: IstB-like 97.2 0.00052 1.1E-08 66.1 5.4 101 130-249 46-149 (178)
337 PRK09183 transposase/IS protei 97.2 0.0025 5.4E-08 65.5 10.7 102 130-249 101-205 (259)
338 KOG2228 Origin recognition com 97.2 0.0033 7.2E-08 64.2 11.1 171 105-280 25-219 (408)
339 PRK11308 dppF dipeptide transp 97.2 0.0038 8.2E-08 66.6 12.4 62 197-258 159-223 (327)
340 CHL00131 ycf16 sulfate ABC tra 97.2 0.0047 1E-07 63.6 12.8 61 196-256 155-217 (252)
341 TIGR03005 ectoine_ehuA ectoine 97.2 0.0037 7.9E-08 64.4 11.9 60 197-256 151-213 (252)
342 PRK13634 cbiO cobalt transport 97.2 0.0043 9.4E-08 65.2 12.6 61 197-257 150-213 (290)
343 TIGR03873 F420-0_ABC_ATP propo 97.2 0.005 1.1E-07 63.5 12.9 60 198-257 143-204 (256)
344 PRK14264 phosphate ABC transpo 97.2 0.005 1.1E-07 65.2 13.1 60 199-258 207-267 (305)
345 PRK13649 cbiO cobalt transport 97.2 0.0028 6.1E-08 66.4 11.1 61 197-257 150-212 (280)
346 cd03299 ABC_ModC_like Archeal 97.2 0.0044 9.6E-08 63.0 12.2 61 196-256 133-196 (235)
347 TIGR03410 urea_trans_UrtE urea 97.2 0.0034 7.5E-08 63.6 11.4 58 200-257 139-199 (230)
348 PRK11614 livF leucine/isoleuci 97.2 0.0032 6.9E-08 64.2 11.1 57 200-256 145-203 (237)
349 PRK15439 autoinducer 2 ABC tra 97.2 0.0047 1E-07 70.6 13.7 128 130-257 36-207 (510)
350 KOG4341 F-box protein containi 97.2 5.4E-05 1.2E-09 78.8 -1.9 116 635-775 322-442 (483)
351 COG1122 CbiO ABC-type cobalt t 97.2 0.0029 6.3E-08 63.5 10.5 58 199-256 145-205 (235)
352 PRK13546 teichoic acids export 97.2 0.0041 8.8E-08 64.3 11.9 128 130-257 49-210 (264)
353 cd03257 ABC_NikE_OppD_transpor 97.1 0.0034 7.3E-08 63.6 11.2 58 199-256 152-212 (228)
354 PRK15064 ABC transporter ATP-b 97.1 0.0038 8.3E-08 71.8 13.0 59 197-257 160-219 (530)
355 PRK13637 cbiO cobalt transport 97.1 0.0032 6.9E-08 66.1 11.3 61 196-256 148-211 (287)
356 PRK15093 antimicrobial peptide 97.1 0.0059 1.3E-07 65.4 13.4 59 200-258 166-227 (330)
357 PRK04296 thymidine kinase; Pro 97.1 0.0013 2.8E-08 64.3 7.7 113 132-251 3-117 (190)
358 PRK09536 btuD corrinoid ABC tr 97.1 0.0048 1.1E-07 67.4 12.9 63 196-258 143-207 (402)
359 PRK13633 cobalt transporter AT 97.1 0.0029 6.4E-08 66.1 10.9 59 197-255 149-210 (280)
360 cd03240 ABC_Rad50 The catalyti 97.1 0.0019 4.1E-08 63.9 8.9 61 202-264 131-195 (204)
361 PRK14273 phosphate ABC transpo 97.1 0.005 1.1E-07 63.5 12.4 59 199-257 157-216 (254)
362 PRK14272 phosphate ABC transpo 97.1 0.0051 1.1E-07 63.3 12.5 57 200-256 156-213 (252)
363 PRK13651 cobalt transporter AT 97.1 0.0052 1.1E-07 64.9 12.7 60 197-256 170-231 (305)
364 PRK14261 phosphate ABC transpo 97.1 0.0057 1.2E-07 63.0 12.8 58 199-256 156-214 (253)
365 PRK14235 phosphate transporter 97.1 0.0049 1.1E-07 64.0 12.4 59 199-257 170-229 (267)
366 PRK08939 primosomal protein Dn 97.1 0.0022 4.8E-08 67.3 9.8 122 108-249 135-260 (306)
367 PRK13638 cbiO cobalt transport 97.1 0.0044 9.5E-08 64.5 12.0 61 197-257 141-203 (271)
368 PRK14245 phosphate ABC transpo 97.1 0.0046 9.9E-08 63.6 12.0 60 197-256 151-211 (250)
369 PRK13644 cbiO cobalt transport 97.1 0.0034 7.3E-08 65.4 11.1 59 197-255 141-201 (274)
370 PRK08118 topology modulation p 97.1 0.00021 4.5E-09 68.2 1.9 34 133-166 3-37 (167)
371 TIGR02640 gas_vesic_GvpN gas v 97.1 0.0083 1.8E-07 62.0 13.9 111 132-249 22-160 (262)
372 PRK10070 glycine betaine trans 97.1 0.0055 1.2E-07 66.9 13.1 63 196-258 168-233 (400)
373 PRK13635 cbiO cobalt transport 97.1 0.0012 2.7E-08 68.8 7.8 57 199-255 147-206 (279)
374 PRK14239 phosphate transporter 97.1 0.0053 1.1E-07 63.2 12.5 56 200-255 156-212 (252)
375 TIGR03689 pup_AAA proteasome A 97.1 0.003 6.5E-08 70.5 11.1 167 104-280 182-378 (512)
376 TIGR03346 chaperone_ClpB ATP-d 97.1 0.0024 5.1E-08 77.2 11.2 124 104-237 565-694 (852)
377 PRK15112 antimicrobial peptide 97.1 0.004 8.7E-08 64.6 11.4 61 197-257 154-217 (267)
378 PRK10636 putative ABC transpor 97.1 0.006 1.3E-07 71.5 14.1 127 130-258 337-495 (638)
379 PRK10787 DNA-binding ATP-depen 97.1 0.0011 2.4E-08 78.5 8.0 166 103-280 321-506 (784)
380 PRK11701 phnK phosphonate C-P 97.1 0.0048 1E-07 63.7 11.9 61 196-256 155-218 (258)
381 PRK14256 phosphate ABC transpo 97.1 0.0061 1.3E-07 62.7 12.7 58 199-256 155-213 (252)
382 TIGR00972 3a0107s01c2 phosphat 97.1 0.0042 9.2E-08 63.7 11.4 59 199-257 151-210 (247)
383 PRK14275 phosphate ABC transpo 97.1 0.0071 1.5E-07 63.4 13.3 61 197-257 187-248 (286)
384 PRK14242 phosphate transporter 97.1 0.0045 9.8E-08 63.8 11.7 59 199-257 156-215 (253)
385 PRK14253 phosphate ABC transpo 97.1 0.0047 1E-07 63.5 11.7 59 199-257 152-211 (249)
386 cd03281 ABC_MSH5_euk MutS5 hom 97.1 0.0053 1.1E-07 61.1 11.6 121 131-256 29-160 (213)
387 PRK14237 phosphate transporter 97.1 0.005 1.1E-07 63.9 12.0 57 200-256 171-228 (267)
388 TIGR02868 CydC thiol reductant 97.1 0.003 6.5E-08 72.8 11.4 49 201-249 479-528 (529)
389 PRK13632 cbiO cobalt transport 97.1 0.0035 7.5E-08 65.3 10.8 57 198-254 148-207 (271)
390 PRK07952 DNA replication prote 97.1 0.0031 6.8E-08 63.7 10.0 103 131-249 99-204 (244)
391 PRK10575 iron-hydroxamate tran 97.1 0.0046 1E-07 64.1 11.6 62 196-257 151-215 (265)
392 PRK13639 cbiO cobalt transport 97.1 0.0059 1.3E-07 63.7 12.5 59 198-256 143-203 (275)
393 PRK10419 nikE nickel transport 97.1 0.0057 1.2E-07 63.5 12.2 62 196-257 155-219 (268)
394 PRK14267 phosphate ABC transpo 97.1 0.0064 1.4E-07 62.6 12.5 58 200-257 157-215 (253)
395 PRK13636 cbiO cobalt transport 97.1 0.0013 2.8E-08 68.9 7.4 59 198-256 147-208 (283)
396 PRK11607 potG putrescine trans 97.1 0.0016 3.4E-08 70.8 8.3 129 130-258 44-218 (377)
397 PRK14263 phosphate ABC transpo 97.1 0.0074 1.6E-07 62.3 12.9 61 197-257 154-215 (261)
398 PRK15177 Vi polysaccharide exp 97.1 0.0059 1.3E-07 60.9 11.8 25 130-154 12-36 (213)
399 PRK06526 transposase; Provisio 97.1 0.0017 3.8E-08 66.2 8.0 102 130-250 97-201 (254)
400 PRK09473 oppD oligopeptide tra 97.1 0.0045 9.8E-08 66.1 11.5 58 200-257 169-229 (330)
401 PRK10636 putative ABC transpor 97.1 0.0059 1.3E-07 71.6 13.4 60 197-258 154-214 (638)
402 PRK13409 putative ATPase RIL; 97.1 0.0047 1E-07 71.4 12.4 63 196-258 216-279 (590)
403 PRK13642 cbiO cobalt transport 97.0 0.0015 3.3E-08 68.1 7.8 58 198-255 146-206 (277)
404 PRK14262 phosphate ABC transpo 97.0 0.0056 1.2E-07 62.9 11.9 57 200-256 154-211 (250)
405 PRK14274 phosphate ABC transpo 97.0 0.0061 1.3E-07 63.0 12.2 58 199-256 162-220 (259)
406 TIGR01241 FtsH_fam ATP-depende 97.0 0.017 3.6E-07 65.7 16.7 185 104-313 55-267 (495)
407 PRK14258 phosphate ABC transpo 97.0 0.0067 1.5E-07 62.7 12.5 61 197-257 155-218 (261)
408 COG1125 OpuBA ABC-type proline 97.0 0.0026 5.6E-08 62.5 8.5 57 202-258 145-204 (309)
409 PRK06964 DNA polymerase III su 97.0 0.028 6.1E-07 59.8 17.1 93 209-313 131-225 (342)
410 PRK10938 putative molybdenum t 97.0 0.0055 1.2E-07 69.8 12.8 63 195-257 138-202 (490)
411 PRK15079 oligopeptide ABC tran 97.0 0.0045 9.7E-08 66.2 11.2 59 200-258 169-230 (331)
412 PRK14238 phosphate transporter 97.0 0.0058 1.3E-07 63.6 11.9 57 201-257 176-233 (271)
413 cd01120 RecA-like_NTPases RecA 97.0 0.0031 6.7E-08 59.8 9.2 40 133-174 1-40 (165)
414 COG4555 NatA ABC-type Na+ tran 97.0 0.0012 2.5E-08 62.5 5.8 54 203-256 144-199 (245)
415 PRK13657 cyclic beta-1,2-gluca 97.0 0.005 1.1E-07 71.9 12.6 63 200-264 479-542 (588)
416 PRK15064 ABC transporter ATP-b 97.0 0.0069 1.5E-07 69.7 13.6 127 130-258 344-503 (530)
417 COG4152 ABC-type uncharacteriz 97.0 0.0066 1.4E-07 59.4 11.0 51 205-255 143-195 (300)
418 PRK11147 ABC transporter ATPas 97.0 0.007 1.5E-07 71.1 13.8 60 197-258 161-221 (635)
419 KOG1859 Leucine-rich repeat pr 97.0 2.3E-05 4.9E-10 86.6 -6.3 107 675-797 185-293 (1096)
420 COG3839 MalK ABC-type sugar tr 97.0 0.002 4.2E-08 67.6 8.1 129 130-258 28-202 (338)
421 PRK14244 phosphate ABC transpo 97.0 0.007 1.5E-07 62.3 12.2 57 200-256 157-214 (251)
422 PRK14251 phosphate ABC transpo 97.0 0.0053 1.2E-07 63.1 11.3 57 200-256 155-212 (251)
423 PRK14271 phosphate ABC transpo 97.0 0.0075 1.6E-07 62.9 12.5 59 199-257 170-229 (276)
424 cd03279 ABC_sbcCD SbcCD and ot 97.0 0.0091 2E-07 59.6 12.6 48 210-257 151-200 (213)
425 PRK10253 iron-enterobactin tra 97.0 0.0048 1E-07 64.0 11.0 60 198-257 149-211 (265)
426 PRK11889 flhF flagellar biosyn 97.0 0.0083 1.8E-07 63.8 12.5 113 130-245 240-357 (436)
427 PRK09984 phosphonate/organopho 97.0 0.0067 1.4E-07 62.8 11.9 58 200-257 160-220 (262)
428 TIGR01186 proV glycine betaine 97.0 0.0069 1.5E-07 65.3 12.3 60 199-258 136-198 (363)
429 PRK07993 DNA polymerase III su 97.0 0.025 5.4E-07 60.3 16.4 95 208-311 106-202 (334)
430 KOG3665 ZYG-1-like serine/thre 97.0 0.00023 5E-09 82.7 1.1 112 675-796 146-263 (699)
431 PRK11231 fecE iron-dicitrate t 97.0 0.0079 1.7E-07 62.0 12.4 58 199-256 145-204 (255)
432 PRK14241 phosphate transporter 97.0 0.0074 1.6E-07 62.3 12.1 59 199-257 155-214 (258)
433 PF07693 KAP_NTPase: KAP famil 97.0 0.047 1E-06 58.6 18.8 42 110-154 2-43 (325)
434 KOG1969 DNA replication checkp 97.0 0.0025 5.5E-08 71.3 8.8 90 128-235 323-412 (877)
435 PRK14248 phosphate ABC transpo 97.0 0.0068 1.5E-07 63.0 11.9 58 200-257 172-230 (268)
436 PRK12608 transcription termina 97.0 0.0051 1.1E-07 65.3 10.8 102 112-220 119-230 (380)
437 PRK11176 lipid transporter ATP 97.0 0.0049 1.1E-07 72.0 12.0 57 199-255 487-544 (582)
438 PRK11160 cysteine/glutathione 97.0 0.0066 1.4E-07 70.5 12.9 56 200-255 483-539 (574)
439 PRK11174 cysteine/glutathione 97.0 0.0072 1.6E-07 70.7 13.3 63 200-264 493-556 (588)
440 cd03288 ABCC_SUR2 The SUR doma 97.0 0.0085 1.8E-07 61.8 12.3 59 197-255 161-220 (257)
441 KOG0066 eIF2-interacting prote 97.0 0.0029 6.3E-08 66.3 8.6 122 130-253 612-764 (807)
442 PF02562 PhoH: PhoH-like prote 97.0 0.0018 4E-08 63.1 6.8 132 108-251 4-157 (205)
443 PRK14252 phosphate ABC transpo 97.0 0.01 2.2E-07 61.6 12.9 58 200-257 169-227 (265)
444 PRK14236 phosphate transporter 97.0 0.01 2.2E-07 61.9 12.9 58 199-256 175-233 (272)
445 TIGR02857 CydD thiol reductant 97.0 0.009 2E-07 68.9 13.7 57 199-255 465-522 (529)
446 PRK14243 phosphate transporter 97.0 0.0091 2E-07 61.9 12.4 58 200-257 159-217 (264)
447 PRK05541 adenylylsulfate kinas 97.0 0.0057 1.2E-07 59.1 10.3 36 130-167 6-41 (176)
448 PRK14270 phosphate ABC transpo 96.9 0.0083 1.8E-07 61.7 12.1 58 200-257 155-213 (251)
449 TIGR03375 type_I_sec_LssB type 96.9 0.0073 1.6E-07 72.0 13.3 57 199-255 608-665 (694)
450 PRK14240 phosphate transporter 96.9 0.0085 1.8E-07 61.6 12.1 58 200-257 154-212 (250)
451 PRK14260 phosphate ABC transpo 96.9 0.0091 2E-07 61.7 12.4 61 197-257 155-216 (259)
452 TIGR02769 nickel_nikE nickel i 96.9 0.0079 1.7E-07 62.4 11.9 60 197-256 155-217 (265)
453 TIGR00763 lon ATP-dependent pr 96.9 0.0059 1.3E-07 73.1 12.4 51 104-154 320-370 (775)
454 PRK13631 cbiO cobalt transport 96.9 0.012 2.5E-07 62.7 13.3 60 196-255 180-241 (320)
455 PRK13641 cbiO cobalt transport 96.9 0.0064 1.4E-07 63.8 11.2 61 197-257 150-212 (287)
456 PRK14254 phosphate ABC transpo 96.9 0.0089 1.9E-07 62.6 12.2 62 197-258 185-247 (285)
457 PRK13646 cbiO cobalt transport 96.9 0.0065 1.4E-07 63.7 11.2 60 197-256 150-212 (286)
458 PRK14255 phosphate ABC transpo 96.9 0.0084 1.8E-07 61.7 11.8 58 200-257 156-214 (252)
459 PRK03695 vitamin B12-transport 96.9 0.0094 2E-07 61.1 12.0 58 199-256 133-199 (248)
460 COG4988 CydD ABC-type transpor 96.9 0.0042 9E-08 68.6 9.7 128 130-257 346-522 (559)
461 TIGR02203 MsbA_lipidA lipid A 96.9 0.0066 1.4E-07 70.8 12.3 66 197-264 474-540 (571)
462 TIGR02323 CP_lyasePhnK phospho 96.9 0.0097 2.1E-07 61.3 12.2 61 197-257 153-216 (253)
463 PRK10762 D-ribose transporter 96.9 0.0084 1.8E-07 68.5 12.8 62 196-257 145-208 (501)
464 PRK04132 replication factor C 96.9 0.025 5.4E-07 66.9 16.6 154 138-311 571-729 (846)
465 cd03282 ABC_MSH4_euk MutS4 hom 96.9 0.0024 5.2E-08 63.0 7.2 122 130-258 28-159 (204)
466 PRK06835 DNA replication prote 96.9 0.0024 5.1E-08 67.7 7.5 102 132-249 184-288 (329)
467 PRK14257 phosphate ABC transpo 96.9 0.0092 2E-07 63.7 12.1 58 198-255 231-289 (329)
468 PRK11022 dppD dipeptide transp 96.9 0.0098 2.1E-07 63.5 12.3 58 200-257 161-221 (326)
469 KOG1514 Origin recognition com 96.9 0.035 7.5E-07 62.4 16.6 206 104-316 396-624 (767)
470 TIGR01192 chvA glucan exporter 96.9 0.01 2.2E-07 69.0 13.5 66 197-264 476-542 (585)
471 PRK07261 topology modulation p 96.9 0.0026 5.7E-08 60.9 7.2 64 133-219 2-66 (171)
472 cd01131 PilT Pilus retraction 96.9 0.0022 4.7E-08 63.2 6.7 111 132-254 2-113 (198)
473 CHL00095 clpC Clp protease ATP 96.9 0.0039 8.4E-08 75.2 10.1 124 104-237 509-638 (821)
474 COG3842 PotA ABC-type spermidi 96.9 0.0021 4.6E-08 67.8 6.8 129 130-258 30-205 (352)
475 PRK11819 putative ABC transpor 96.9 0.011 2.4E-07 68.4 13.4 57 199-257 170-227 (556)
476 COG0470 HolB ATPase involved i 96.9 0.0061 1.3E-07 65.4 10.7 142 105-266 2-167 (325)
477 PRK13645 cbiO cobalt transport 96.9 0.011 2.3E-07 62.3 12.3 58 200-257 158-218 (289)
478 PLN03073 ABC transporter F fam 96.9 0.013 2.7E-07 69.3 13.9 55 202-258 354-409 (718)
479 TIGR01069 mutS2 MutS2 family p 96.9 0.0012 2.5E-08 78.2 5.3 120 130-255 321-450 (771)
480 TIGR02858 spore_III_AA stage I 96.9 0.0066 1.4E-07 62.4 10.2 125 112-254 97-233 (270)
481 cd03234 ABCG_White The White s 96.8 0.013 2.8E-07 59.2 12.3 55 201-255 152-210 (226)
482 PRK13695 putative NTPase; Prov 96.8 0.0015 3.3E-08 63.0 5.2 22 133-154 2-23 (174)
483 PRK14266 phosphate ABC transpo 96.8 0.011 2.4E-07 60.7 11.9 58 200-257 154-212 (250)
484 cd03290 ABCC_SUR1_N The SUR do 96.8 0.024 5.1E-07 56.9 14.0 67 196-264 144-214 (218)
485 COG1222 RPT1 ATP-dependent 26S 96.8 0.031 6.8E-07 57.9 14.6 202 105-332 152-391 (406)
486 PRK11819 putative ABC transpor 96.8 0.015 3.4E-07 67.1 14.3 132 130-264 349-515 (556)
487 TIGR02982 heterocyst_DevA ABC 96.8 0.0085 1.9E-07 60.2 10.8 56 199-254 148-206 (220)
488 PRK11147 ABC transporter ATPas 96.8 0.011 2.4E-07 69.5 13.2 127 130-258 344-505 (635)
489 TIGR03269 met_CoM_red_A2 methy 96.8 0.0054 1.2E-07 70.4 10.5 61 197-257 173-236 (520)
490 PRK10982 galactose/methyl gala 96.8 0.013 2.9E-07 66.7 13.5 61 197-257 139-201 (491)
491 PLN03073 ABC transporter F fam 96.8 0.012 2.6E-07 69.5 13.3 127 130-258 534-692 (718)
492 KOG0531 Protein phosphatase 1, 96.8 0.00028 6E-09 78.4 -0.3 235 471-798 76-320 (414)
493 COG1875 NYN ribonuclease and A 96.8 0.0037 7.9E-08 64.6 7.7 134 106-248 226-386 (436)
494 PRK11288 araG L-arabinose tran 96.8 0.012 2.5E-07 67.3 13.0 63 196-258 400-464 (501)
495 TIGR02237 recomb_radB DNA repa 96.8 0.0053 1.2E-07 61.2 9.0 87 129-219 10-106 (209)
496 TIGR03269 met_CoM_red_A2 methy 96.8 0.013 2.8E-07 67.3 13.4 61 197-257 432-495 (520)
497 PRK15439 autoinducer 2 ABC tra 96.8 0.012 2.6E-07 67.3 13.0 62 196-257 407-470 (510)
498 COG1118 CysA ABC-type sulfate/ 96.8 0.0072 1.6E-07 61.2 9.6 128 130-257 27-205 (345)
499 TIGR01257 rim_protein retinal- 96.8 0.0028 6.1E-08 81.6 8.4 60 198-257 1067-1127(2272)
500 cd03291 ABCC_CFTR1 The CFTR su 96.8 0.014 3E-07 60.9 12.2 59 196-254 163-223 (282)
No 1
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=100.00 E-value=1e-75 Score=680.80 Aligned_cols=705 Identities=26% Similarity=0.399 Sum_probs=487.6
Q ss_pred CchhhhhHHHHHHHhhhhcCCCcccccccccccceeeeccccccccccCcchhhhHHHHHHHHHHHHHHHHHHhhcccCC
Q 047321 1 MEDVLDEWITARLKLQIEGIDDDNALALAPHKKKVRSFFCAVSNCFGSFKQLNLRHDIAVKIREINGKLDDIASQKDTFK 80 (807)
Q Consensus 1 ~ed~ld~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~l~~i~~~~~~~~ 80 (807)
|||+++.|..+....+..+.- .+...-.+.. |+ + .++++.+..+..+..++-.+......++
T Consensus 71 ~e~~~~~~~v~~~~~~~~~~l-------~~~~~~~~~~------c~-~----~~~~~~~~~~~~~~~rv~~~l~~ve~l~ 132 (889)
T KOG4658|consen 71 AEDIIWLFLVEEIERKANDLL-------STRSVERQRL------CL-C----GFCSKNVSDSYKYGKRVSKVLREVESLG 132 (889)
T ss_pred HHHHHHHHHHHHHHHHHhHHh-------hhhHHHHHHH------hh-h----hhHhHhhhhhHhHHHHHHHHHHHHHHhc
Confidence 578899999988876554320 0000011111 22 1 4566667777777777776666666665
Q ss_pred cccccc---CCcccccccccCCCccCCccccccchHHHHHHHHhCCCCCCCCCceEEEEEccCCChHHHHHHHHHcCcc-
Q 047321 81 FVENVS---NNVKKAERVRTTSLIDEGGVCGRVDEKNELLSKLLCGSSEQQKGLDVISLVGLGGIGKTTLAQLAYNNDE- 156 (807)
Q Consensus 81 ~~~~~~---~~~~~~~~~~~~~~~~~~~~vGR~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~- 156 (807)
...... ........+...+...... ||.+..++++.+.|... +..+++|+||||+||||||+.++|+..
T Consensus 133 ~~~~~~~~~~~~~~~~~~e~~~~~~~~~-VG~e~~~~kl~~~L~~d------~~~iv~i~GMGGvGKTTL~~qi~N~~~~ 205 (889)
T KOG4658|consen 133 SKGVFEVVGESLDPREKVETRPIQSESD-VGLETMLEKLWNRLMED------DVGIVGIYGMGGVGKTTLARQIFNKFDE 205 (889)
T ss_pred cccceecccccccchhhcccCCCCcccc-ccHHHHHHHHHHHhccC------CCCEEEEECCCcccHHHHHHHHhcccch
Confidence 333111 1011122234444444455 99999999999999853 348999999999999999999999987
Q ss_pred cccccceEEEEEeCCCCCHHHHHHHHHHHcCCCCCCCc--cHHHHHHHHHHHHhCCceEEEEeCCCCCCccChHHHHHhh
Q 047321 157 VKRNFEKVIWVCVSNTFEEISVAKAIIEGLGVSAFGLS--EFESLMKQIQEYITGKKIFLVLDDVWDGDYKKWDPFFSCL 234 (807)
Q Consensus 157 ~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~--~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~l 234 (807)
++.+|+.++||+||+.|+...++++|++.++....... ..+++...+.++|+++||+|||||||+. ..|+.+..++
T Consensus 206 v~~~Fd~~iWV~VSk~f~~~~iq~~Il~~l~~~~~~~~~~~~~~~~~~i~~~L~~krfllvLDDIW~~--~dw~~I~~~~ 283 (889)
T KOG4658|consen 206 VGNHFDGVIWVVVSKEFTTRKIQQTILERLGLLDEEWEDKEEDELASKLLNLLEGKRFLLVLDDIWEE--VDWDKIGVPF 283 (889)
T ss_pred hcccCceEEEEEEcccccHHhHHHHHHHHhccCCcccchhhHHHHHHHHHHHhccCceEEEEeccccc--ccHHhcCCCC
Confidence 99999999999999999999999999999987544333 2468889999999999999999999986 4599999999
Q ss_pred cCCCCCcEEEEEcCCHHHHHH-hCCCceEeCCCCChhhHHHHHHHHHhccCCccCccchHHHHHHHHHHcCCCHHHHHHH
Q 047321 235 KNGHHESKILITTHDRSVALQ-LGSIDIIPVKELGEGECWLLFKQIAFLRRSFEDCEKLEPIGRKIASKCKGLPLAAKVI 313 (807)
Q Consensus 235 ~~~~~gs~IliTTR~~~v~~~-~~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~~~~I~~~c~glPLai~~~ 313 (807)
|...+||+|++|||++.|+.. +++...++++.|+++|||+||++.||.... ...+.++++|++|+++|+|+|||++++
T Consensus 284 p~~~~g~KvvlTTRs~~V~~~~m~~~~~~~v~~L~~~eaW~LF~~~v~~~~~-~~~~~i~~lak~v~~kC~GLPLAl~vi 362 (889)
T KOG4658|consen 284 PSRENGSKVVLTTRSEEVCGRAMGVDYPIEVECLTPEEAWDLFQKKVGPNTL-GSHPDIEELAKEVAEKCGGLPLALNVL 362 (889)
T ss_pred CCccCCeEEEEEeccHhhhhccccCCccccccccCccccHHHHHHhhccccc-cccccHHHHHHHHHHHhCChHHHHHHH
Confidence 999999999999999999998 788889999999999999999999987644 233448999999999999999999999
Q ss_pred HHHhhcCCCHHHHHHHHhcccccc----ccCCCCchhhHHhcccCCCCccchhhhhhhhccCCCcceechhHHHHHHHhc
Q 047321 314 GNLLRSKNTAKEWHIILDSEMWKV----QEIGQGILAPLLLSYNDLPSNSMVKRCFSYCAVFPKDYNMNKRELINLWMTQ 389 (807)
Q Consensus 314 ~~~l~~~~~~~~w~~~~~~~~~~~----~~~~~~i~~~l~lsy~~L~~~~~~k~cfl~~s~fp~~~~i~~~~li~~W~ae 389 (807)
|+.|+.+.+.++|+++.+...+.+ +...+.|++++.+||+.||+ ++|.||+|||+||+||.|+++.||.+||||
T Consensus 363 G~~ma~K~t~~eW~~~~~~l~s~~~~~~~~~~~~i~~iLklSyd~L~~--~lK~CFLycalFPED~~I~~e~Li~yWiaE 440 (889)
T KOG4658|consen 363 GGLLACKKTVQEWRRALNVLKSSLAADFSGMEESILPILKLSYDNLPE--ELKSCFLYCALFPEDYEIKKEKLIEYWIAE 440 (889)
T ss_pred HHHhcCCCcHHHHHHHHccccccccCCCCchhhhhHHhhhccHhhhhH--HHHHHHHhhccCCcccccchHHHHHHHHhc
Confidence 999999999999999998765552 22246799999999999997 999999999999999999999999999999
Q ss_pred CCCCCC-CCchHHHHHHHHHHHHhhcCCcceeccCCCCCccEEEEChhHHHHHHHhhc-----cccEEEEcC-Cccceec
Q 047321 390 GYLNAD-EDEEMEMIGEEYFNILATRSFFQEFQKNDDDDFTSCKMHDIVNDFAQFVSR-----KECLWVEIN-GTKESVI 462 (807)
Q Consensus 390 g~i~~~-~~~~~e~~~~~~~~~L~~rsll~~~~~~~~~~~~~~~mHdlv~~~a~~~~~-----~e~~~~~~~-~~~~~~~ 462 (807)
||+.+. ...+++++|++|+.+|++++|++..... ++..+|+|||+|||+|..+|. .|..++... .....+.
T Consensus 441 Gfi~~~~~~~~~~d~G~~~i~~LV~~~Ll~~~~~~--~~~~~~kmHDvvRe~al~ias~~~~~~e~~iv~~~~~~~~~~~ 518 (889)
T KOG4658|consen 441 GFIDPLDGGETAEDVGYDYIEELVRASLLIEERDE--GRKETVKMHDVVREMALWIASDFGKQEENQIVSDGVGLSEIPQ 518 (889)
T ss_pred cCcCccccccchhcchHHHHHHHHHHHHHhhcccc--cceeEEEeeHHHHHHHHHHhccccccccceEEECCcCcccccc
Confidence 999984 4678999999999999999999886543 566789999999999999999 666555543 2222333
Q ss_pred ccCCcceEEEEEeeccCCCCc-------------------------cccCCCCceeEEEeCCCCCCCCCCCCcccccccc
Q 047321 463 NSFGDKVRHLGLKFEEGASFP-------------------------MSIHGLNRLRTLLIYDQSPYNPSLSSSILPELFN 517 (807)
Q Consensus 463 ~~~~~~~r~L~l~~~~~~~~~-------------------------~~~~~l~~Lr~L~l~~~~~~~l~~~i~~LP~~i~ 517 (807)
...+..+|++++.+|.+...+ ..|..++.||+|+|++|. .+.+||++|+
T Consensus 519 ~~~~~~~rr~s~~~~~~~~~~~~~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~------~l~~LP~~I~ 592 (889)
T KOG4658|consen 519 VKSWNSVRRMSLMNNKIEHIAGSSENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNS------SLSKLPSSIG 592 (889)
T ss_pred ccchhheeEEEEeccchhhccCCCCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCC------ccCcCChHHh
Confidence 445678899998888653211 116678999999999865 7899999999
Q ss_pred Ccccceeeecc-----------ccCCccCeeEecCccCCCccccccccccccccCcccccCCCCCCChhHHHHhhccCCC
Q 047321 518 KLACLRALVIR-----------QSLRTLEKFVVGGGVDGSNTCRLESLKNLQLLRECGIEGLGNVSHLDEAERLQLYNQQ 586 (807)
Q Consensus 518 ~L~~L~~LdL~-----------~~L~~L~~l~~~~~~~~~~~~~i~~L~~L~~L~~L~i~~l~~~~~~~~~~~~~l~~l~ 586 (807)
+|.|||||||+ .+|+.|..+++..... ......-+..|.+|+.|.+..-. .......-..+.++.
T Consensus 593 ~Li~LryL~L~~t~I~~LP~~l~~Lk~L~~Lnl~~~~~--l~~~~~i~~~L~~Lr~L~l~~s~--~~~~~~~l~el~~Le 668 (889)
T KOG4658|consen 593 ELVHLRYLDLSDTGISHLPSGLGNLKKLIYLNLEVTGR--LESIPGILLELQSLRVLRLPRSA--LSNDKLLLKELENLE 668 (889)
T ss_pred hhhhhhcccccCCCccccchHHHHHHhhheeccccccc--cccccchhhhcccccEEEeeccc--cccchhhHHhhhccc
Confidence 99999999998 4455555555543321 01111222235555554443311 111122222345555
Q ss_pred CCCeEEEEeeccCCCcchhhhhchhhHHHHHHhhc----CCCCCCCCCCCcc-cceEeccCCcCceeeCcccCCCCCCCC
Q 047321 587 NLLRLRLRFGRVVDGEDEERRRKNEKDKQLLEALQ----PPLSHLPPLGKLP-LKKLELRDLESVKRVGNEFLGIEESSE 661 (807)
Q Consensus 587 ~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~l~----p~~~~lp~l~~L~-L~~L~L~~~~~l~~i~~~~~~~~~l~~ 661 (807)
+|+.|....... .....-............+. ......+.++.++ |+.|.|.+|...+..........
T Consensus 669 ~L~~ls~~~~s~---~~~e~l~~~~~L~~~~~~l~~~~~~~~~~~~~~~~l~~L~~L~i~~~~~~e~~~~~~~~~~---- 741 (889)
T KOG4658|consen 669 HLENLSITISSV---LLLEDLLGMTRLRSLLQSLSIEGCSKRTLISSLGSLGNLEELSILDCGISEIVIEWEESLI---- 741 (889)
T ss_pred chhhheeecchh---HhHhhhhhhHHHHHHhHhhhhcccccceeecccccccCcceEEEEcCCCchhhcccccccc----
Confidence 666555543220 00000000011111111222 1112334467777 88888888775433221111110
Q ss_pred CCCCCCCCCCccc-cCcccccccccCCCccccchhhhccccCCCCCCcccEEEEccCCCCCCCcccccCC----------
Q 047321 662 DDPSSSSSSPSVI-AFPKLKSLEIDGMKELEEWNYRITRKENISIMPRLSSLQIMNCRKLKALPDYLLQT---------- 730 (807)
Q Consensus 662 ~~~~~~~~~~~~~-~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~lp~~l~~l---------- 730 (807)
.. .|++|..+.+.+|..+....+ ....|+|+.|.+..|+.+..+.+....+
T Consensus 742 -----------~~~~f~~l~~~~~~~~~~~r~l~~-------~~f~~~L~~l~l~~~~~~e~~i~~~k~~~~l~~~i~~f 803 (889)
T KOG4658|consen 742 -----------VLLCFPNLSKVSILNCHMLRDLTW-------LLFAPHLTSLSLVSCRLLEDIIPKLKALLELKELILPF 803 (889)
T ss_pred -----------hhhhHHHHHHHHhhccccccccch-------hhccCcccEEEEecccccccCCCHHHHhhhcccEEecc
Confidence 11 367777777777766655443 1246788888888887776554332222
Q ss_pred CCccEE-eeccCcccccccccccccCCCCCCCCeeeeccCCCcccCC
Q 047321 731 IALQKL-SIYSCDLLEELPILEDRRTTDIPRLSSLAIWYCPKLKVLP 776 (807)
Q Consensus 731 ~~L~~L-~l~~c~~l~~lP~~~~~~~~~l~~L~~L~i~~c~~l~~lP 776 (807)
.+++.+ .+.+.+ .+|.+.+..+ ..+.|+.+.+..||+++++|
T Consensus 804 ~~~~~l~~~~~l~---~l~~i~~~~l-~~~~l~~~~ve~~p~l~~~P 846 (889)
T KOG4658|consen 804 NKLEGLRMLCSLG---GLPQLYWLPL-SFLKLEELIVEECPKLGKLP 846 (889)
T ss_pred cccccceeeecCC---CCceeEeccc-CccchhheehhcCcccccCc
Confidence 223333 122211 1121111111 23346777777777777777
No 2
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=100.00 E-value=2.5e-60 Score=583.40 Aligned_cols=657 Identities=19% Similarity=0.246 Sum_probs=448.5
Q ss_pred HHHHHHHHHHHHHHHhhcccCCcccccc-------CCcccccccccCCCccCCccccccchHHHHHHHHhCCCCCCCCCc
Q 047321 59 AVKIREINGKLDDIASQKDTFKFVENVS-------NNVKKAERVRTTSLIDEGGVCGRVDEKNELLSKLLCGSSEQQKGL 131 (807)
Q Consensus 59 ~~~i~~i~~~l~~i~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~vGR~~~~~~l~~~L~~~~~~~~~~~ 131 (807)
..++++|++.|.++++... +....... ........-...+..+..++|||++.++++..+|.-. ..++
T Consensus 133 ~~~~~~w~~al~~~~~~~g-~~~~~~~~E~~~i~~Iv~~v~~~l~~~~~~~~~~~vG~~~~l~~l~~lL~l~----~~~~ 207 (1153)
T PLN03210 133 EDEKIQWKQALTDVANILG-YHSQNWPNEAKMIEEIANDVLGKLNLTPSNDFEDFVGIEDHIAKMSSLLHLE----SEEV 207 (1153)
T ss_pred hhHHHHHHHHHHHHhCcCc-eecCCCCCHHHHHHHHHHHHHHhhccccCcccccccchHHHHHHHHHHHccc----cCce
Confidence 3578999999999988743 33221110 0011111112223344567999999999999888543 3478
Q ss_pred eEEEEEccCCChHHHHHHHHHcCcccccccceEEEEEe---CCC-----------CC-HHHHHHHHHHHcCCCC-CCCcc
Q 047321 132 DVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCV---SNT-----------FE-EISVAKAIIEGLGVSA-FGLSE 195 (807)
Q Consensus 132 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~---~~~-----------~~-~~~~~~~i~~~l~~~~-~~~~~ 195 (807)
++|+|+||||+||||||+++|+ ++..+|+..+|+.. +.. +. ...+.++++..+.... .....
T Consensus 208 ~vvgI~G~gGiGKTTLA~~l~~--~l~~~F~g~vfv~~~~v~~~~~~~~~~~~~~~~~~~~l~~~~l~~il~~~~~~~~~ 285 (1153)
T PLN03210 208 RMVGIWGSSGIGKTTIARALFS--RLSRQFQSSVFIDRAFISKSMEIYSSANPDDYNMKLHLQRAFLSEILDKKDIKIYH 285 (1153)
T ss_pred EEEEEEcCCCCchHHHHHHHHH--HHhhcCCeEEEeeccccccchhhcccccccccchhHHHHHHHHHHHhCCCCcccCC
Confidence 9999999999999999999998 67788998887742 111 01 1223444444443221 11111
Q ss_pred HHHHHHHHHHHHhCCceEEEEeCCCCCCccChHHHHHhhcCCCCCcEEEEEcCCHHHHHHhCCCceEeCCCCChhhHHHH
Q 047321 196 FESLMKQIQEYITGKKIFLVLDDVWDGDYKKWDPFFSCLKNGHHESKILITTHDRSVALQLGSIDIIPVKELGEGECWLL 275 (807)
Q Consensus 196 ~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~IliTTR~~~v~~~~~~~~~~~l~~L~~~~~~~L 275 (807)
...+++.++++|+||||||||+ ...|+.+.....+.++||+||||||++.++..++..++|+++.|++++||+|
T Consensus 286 ----~~~~~~~L~~krvLLVLDdv~~--~~~l~~L~~~~~~~~~GsrIIiTTrd~~vl~~~~~~~~~~v~~l~~~ea~~L 359 (1153)
T PLN03210 286 ----LGAMEERLKHRKVLIFIDDLDD--QDVLDALAGQTQWFGSGSRIIVITKDKHFLRAHGIDHIYEVCLPSNELALEM 359 (1153)
T ss_pred ----HHHHHHHHhCCeEEEEEeCCCC--HHHHHHHHhhCccCCCCcEEEEEeCcHHHHHhcCCCeEEEecCCCHHHHHHH
Confidence 2456778899999999999976 4678888776666789999999999999998877778999999999999999
Q ss_pred HHHHHhccCCccCccchHHHHHHHHHHcCCCHHHHHHHHHHhhcCCCHHHHHHHHhccccccccCCCCchhhHHhcccCC
Q 047321 276 FKQIAFLRRSFEDCEKLEPIGRKIASKCKGLPLAAKVIGNLLRSKNTAKEWHIILDSEMWKVQEIGQGILAPLLLSYNDL 355 (807)
Q Consensus 276 f~~~a~~~~~~~~~~~~~~~~~~I~~~c~glPLai~~~~~~l~~~~~~~~w~~~~~~~~~~~~~~~~~i~~~l~lsy~~L 355 (807)
|+++||+... .+..+.+++++|+++|+|+|||++++|++|+.+ +..+|+.++++..... +..|..+|++||+.|
T Consensus 360 F~~~Af~~~~--~~~~~~~l~~~iv~~c~GLPLAl~vlgs~L~~k-~~~~W~~~l~~L~~~~---~~~I~~~L~~SYd~L 433 (1153)
T PLN03210 360 FCRSAFKKNS--PPDGFMELASEVALRAGNLPLGLNVLGSYLRGR-DKEDWMDMLPRLRNGL---DGKIEKTLRVSYDGL 433 (1153)
T ss_pred HHHHhcCCCC--CcHHHHHHHHHHHHHhCCCcHHHHHHHHHHcCC-CHHHHHHHHHHHHhCc---cHHHHHHHHHhhhcc
Confidence 9999997643 345688999999999999999999999999976 6889999998865433 246999999999999
Q ss_pred CCccchhhhhhhhccCCCcceechhHHHHHHHhcCCCCCCCCchHHHHHHHHHHHHhhcCCcceeccCCCCCccEEEECh
Q 047321 356 PSNSMVKRCFSYCAVFPKDYNMNKRELINLWMTQGYLNADEDEEMEMIGEEYFNILATRSFFQEFQKNDDDDFTSCKMHD 435 (807)
Q Consensus 356 ~~~~~~k~cfl~~s~fp~~~~i~~~~li~~W~aeg~i~~~~~~~~e~~~~~~~~~L~~rsll~~~~~~~~~~~~~~~mHd 435 (807)
+++ ..|.||+++|+||.+..++ .+..|++.+.... +..++.|+++|||+... ..+.|||
T Consensus 434 ~~~-~~k~~Fl~ia~ff~~~~~~---~v~~~l~~~~~~~----------~~~l~~L~~ksLi~~~~-------~~~~MHd 492 (1153)
T PLN03210 434 NNK-KDKAIFRHIACLFNGEKVN---DIKLLLANSDLDV----------NIGLKNLVDKSLIHVRE-------DIVEMHS 492 (1153)
T ss_pred Ccc-chhhhhheehhhcCCCCHH---HHHHHHHhcCCCc----------hhChHHHHhcCCEEEcC-------CeEEhhh
Confidence 873 4899999999999886553 4677888765532 22388999999998743 1489999
Q ss_pred hHHHHHHHhhcccc-------EEEEcCCc-cceecccCCcceEEEEEeeccCCC---CccccCCCCceeEEEeCCCC---
Q 047321 436 IVNDFAQFVSRKEC-------LWVEINGT-KESVINSFGDKVRHLGLKFEEGAS---FPMSIHGLNRLRTLLIYDQS--- 501 (807)
Q Consensus 436 lv~~~a~~~~~~e~-------~~~~~~~~-~~~~~~~~~~~~r~L~l~~~~~~~---~~~~~~~l~~Lr~L~l~~~~--- 501 (807)
++|++|+++++++. +....... .....+.+..+++.+++....... .+..|.+|++|++|.+..+.
T Consensus 493 Ll~~~~r~i~~~~~~~~~~r~~l~~~~di~~vl~~~~g~~~v~~i~l~~~~~~~~~i~~~aF~~m~~L~~L~~~~~~~~~ 572 (1153)
T PLN03210 493 LLQEMGKEIVRAQSNEPGEREFLVDAKDICDVLEDNTGTKKVLGITLDIDEIDELHIHENAFKGMRNLLFLKFYTKKWDQ 572 (1153)
T ss_pred HHHHHHHHHHHhhcCCCCcceeEeCHHHHHHHHHhCcccceeeEEEeccCccceeeecHHHHhcCccccEEEEecccccc
Confidence 99999999997763 22211111 111123345677777776554432 23456777888877775421
Q ss_pred ----------CCC-----------CCCCCccccccccCcccceeeecc-----------ccCCccCeeEecCccCCCccc
Q 047321 502 ----------PYN-----------PSLSSSILPELFNKLACLRALVIR-----------QSLRTLEKFVVGGGVDGSNTC 549 (807)
Q Consensus 502 ----------~~~-----------l~~~i~~LP~~i~~L~~L~~LdL~-----------~~L~~L~~l~~~~~~~~~~~~ 549 (807)
.+. -.+.+..+|..+ .+.+|++|+++ ..+.+|+.++++.+.. -.
T Consensus 573 ~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~~lP~~f-~~~~L~~L~L~~s~l~~L~~~~~~l~~Lk~L~Ls~~~~---l~ 648 (1153)
T PLN03210 573 KKEVRWHLPEGFDYLPPKLRLLRWDKYPLRCMPSNF-RPENLVKLQMQGSKLEKLWDGVHSLTGLRNIDLRGSKN---LK 648 (1153)
T ss_pred cccceeecCcchhhcCcccEEEEecCCCCCCCCCcC-CccCCcEEECcCccccccccccccCCCCCEEECCCCCC---cC
Confidence 000 023566666665 45677777776 3445555555554320 12
Q ss_pred cccccccccccCcccccCCCCCCChhHHHHhhccCCCCCCeEEEEeeccCCCcchhhhhchhhHHHHHHhhcCCCCCCCC
Q 047321 550 RLESLKNLQLLRECGIEGLGNVSHLDEAERLQLYNQQNLLRLRLRFGRVVDGEDEERRRKNEKDKQLLEALQPPLSHLPP 629 (807)
Q Consensus 550 ~i~~L~~L~~L~~L~i~~l~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~l~p~~~~lp~ 629 (807)
.++.+..+.+|+.|.+.++..+..+ +..+.++++|+.|++++|.. ...+|.
T Consensus 649 ~ip~ls~l~~Le~L~L~~c~~L~~l----p~si~~L~~L~~L~L~~c~~-------------------------L~~Lp~ 699 (1153)
T PLN03210 649 EIPDLSMATNLETLKLSDCSSLVEL----PSSIQYLNKLEDLDMSRCEN-------------------------LEILPT 699 (1153)
T ss_pred cCCccccCCcccEEEecCCCCcccc----chhhhccCCCCEEeCCCCCC-------------------------cCccCC
Confidence 2334555666666666654443322 22456677777777776541 034554
Q ss_pred CCCcc-cceEeccCCcCceeeCcccCCCCCCCCCCCCCCCCCCc------------------------------cccCcc
Q 047321 630 LGKLP-LKKLELRDLESVKRVGNEFLGIEESSEDDPSSSSSSPS------------------------------VIAFPK 678 (807)
Q Consensus 630 l~~L~-L~~L~L~~~~~l~~i~~~~~~~~~l~~~~~~~~~~~~~------------------------------~~~l~~ 678 (807)
-.+++ |+.|++++|..++.++.....+..|.+.++.....|.. ...+++
T Consensus 700 ~i~l~sL~~L~Lsgc~~L~~~p~~~~nL~~L~L~~n~i~~lP~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~s 779 (1153)
T PLN03210 700 GINLKSLYRLNLSGCSRLKSFPDISTNISWLDLDETAIEEFPSNLRLENLDELILCEMKSEKLWERVQPLTPLMTMLSPS 779 (1153)
T ss_pred cCCCCCCCEEeCCCCCCccccccccCCcCeeecCCCccccccccccccccccccccccchhhccccccccchhhhhcccc
Confidence 33566 77777777766655553322333333322222222211 112356
Q ss_pred cccccccCCCccccchhhhccccCCCCCCcccEEEEccCCCCCCCcccccCCCCccEEeeccCcccccccccc-------
Q 047321 679 LKSLEIDGMKELEEWNYRITRKENISIMPRLSSLQIMNCRKLKALPDYLLQTIALQKLSIYSCDLLEELPILE------- 751 (807)
Q Consensus 679 L~~L~l~~~~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~lp~~l~~l~~L~~L~l~~c~~l~~lP~~~------- 751 (807)
|+.|+|++|+.+..+|. .+..+++|+.|+|++|.+++.+|..+ .+++|+.|++++|..+..+|...
T Consensus 780 L~~L~Ls~n~~l~~lP~------si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p~~~~nL~~L~ 852 (1153)
T PLN03210 780 LTRLFLSDIPSLVELPS------SIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRTFPDISTNISDLN 852 (1153)
T ss_pred chheeCCCCCCccccCh------hhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCccccccccccccCEeE
Confidence 77777777777766665 45678888888888888888888776 67888888888887776655210
Q ss_pred ---------cccCCCCCCCCeeeeccCCCcccCCccCCCCCcccccccccchh
Q 047321 752 ---------DRRTTDIPRLSSLAIWYCPKLKVLPDYLLRTTTLQAGEQDYENE 795 (807)
Q Consensus 752 ---------~~~~~~l~~L~~L~i~~c~~l~~lP~~l~~l~~L~~L~l~~~~~ 795 (807)
+..+..+++|+.|++.+|++++.+|..+..++.|+.+++++|.-
T Consensus 853 Ls~n~i~~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~~ 905 (1153)
T PLN03210 853 LSRTGIEEVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCGA 905 (1153)
T ss_pred CCCCCCccChHHHhcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCCcc
Confidence 03456788999999999999999999899999999999999953
No 3
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=100.00 E-value=7.2e-44 Score=376.50 Aligned_cols=278 Identities=37% Similarity=0.610 Sum_probs=226.3
Q ss_pred ccchHHHHHHHHhCCCCCCCCCceEEEEEccCCChHHHHHHHHHcCcccccccceEEEEEeCCCCCHHHHHHHHHHHcCC
Q 047321 109 RVDEKNELLSKLLCGSSEQQKGLDVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSNTFEEISVAKAIIEGLGV 188 (807)
Q Consensus 109 R~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~ 188 (807)
||.++++|.+.|.... .+.++|+|+||||+||||||..++++..++.+|+.++|+.++...+...+++.|+..++.
T Consensus 1 re~~~~~l~~~L~~~~----~~~~~v~I~G~~G~GKT~LA~~~~~~~~~~~~f~~v~wv~~~~~~~~~~~~~~i~~~l~~ 76 (287)
T PF00931_consen 1 REKEIEKLKDWLLDNS----NEVRVVAIVGMGGIGKTTLARQVARDLRIKNRFDGVIWVSLSKNPSLEQLLEQILRQLGE 76 (287)
T ss_dssp -HHHHHHHHHHHHTTT----TSSEEEEEEESTTSSHHHHHHHHHCHHHHCCCCTEEEEEEEES-SCCHHHHHHHHHHHTC
T ss_pred CHHHHHHHHHHhhCCC----CCeEEEEEEcCCcCCcceeeeecccccccccccccccccccccccccccccccccccccc
Confidence 7899999999999643 479999999999999999999999976688999999999999999999999999999987
Q ss_pred CCC---CCccHHHHHHHHHHHHhCCceEEEEeCCCCCCccChHHHHHhhcCCCCCcEEEEEcCCHHHHHHhCC-CceEeC
Q 047321 189 SAF---GLSEFESLMKQIQEYITGKKIFLVLDDVWDGDYKKWDPFFSCLKNGHHESKILITTHDRSVALQLGS-IDIIPV 264 (807)
Q Consensus 189 ~~~---~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~IliTTR~~~v~~~~~~-~~~~~l 264 (807)
... ...+.+.....+.+.++++++||||||||+. ..|+.+...++....|++||||||+..++..+.. ...+++
T Consensus 77 ~~~~~~~~~~~~~~~~~l~~~L~~~~~LlVlDdv~~~--~~~~~l~~~~~~~~~~~kilvTTR~~~v~~~~~~~~~~~~l 154 (287)
T PF00931_consen 77 PDSSISDPKDIEELQDQLRELLKDKRCLLVLDDVWDE--EDLEELREPLPSFSSGSKILVTTRDRSVAGSLGGTDKVIEL 154 (287)
T ss_dssp C-STSSCCSSHHHHHHHHHHHHCCTSEEEEEEEE-SH--HHH-------HCHHSS-EEEEEESCGGGGTTHHSCEEEEEC
T ss_pred cccccccccccccccccchhhhccccceeeeeeeccc--ccccccccccccccccccccccccccccccccccccccccc
Confidence 743 4567788999999999999999999999874 5788888888877789999999999988876654 678999
Q ss_pred CCCChhhHHHHHHHHHhccCCccCccchHHHHHHHHHHcCCCHHHHHHHHHHhhcCCCHHHHHHHHhcccccccc---CC
Q 047321 265 KELGEGECWLLFKQIAFLRRSFEDCEKLEPIGRKIASKCKGLPLAAKVIGNLLRSKNTAKEWHIILDSEMWKVQE---IG 341 (807)
Q Consensus 265 ~~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~~~~I~~~c~glPLai~~~~~~l~~~~~~~~w~~~~~~~~~~~~~---~~ 341 (807)
++|+.++|++||++.++... ....+.+.+.+++|+++|+|+||||+++|++|+.+.+..+|..++++..+...+ ..
T Consensus 155 ~~L~~~ea~~L~~~~~~~~~-~~~~~~~~~~~~~i~~~c~glPLal~~~a~~l~~~~~~~~w~~~~~~l~~~~~~~~~~~ 233 (287)
T PF00931_consen 155 EPLSEEEALELFKKRAGRKE-SESPEDLEDLAKEIVEKCGGLPLALKLIASYLRSKSTVDEWEEALEELENSLRESRDYD 233 (287)
T ss_dssp SS--HHHHHHHHHHHHTSHS-----TTSCTHHHHHHHHTTT-HHHHHHHHHHHHHHHSSSSHHHHHHHHHHCHTCSSGSC
T ss_pred cccccccccccccccccccc-ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 99999999999999997765 223345567899999999999999999999997766778999998775555432 34
Q ss_pred CCchhhHHhcccCCCCccchhhhhhhhccCCCcceechhHHHHHHHhcCCCCCC
Q 047321 342 QGILAPLLLSYNDLPSNSMVKRCFSYCAVFPKDYNMNKRELINLWMTQGYLNAD 395 (807)
Q Consensus 342 ~~i~~~l~lsy~~L~~~~~~k~cfl~~s~fp~~~~i~~~~li~~W~aeg~i~~~ 395 (807)
..+..++.+||+.||+ ++|+||+|||+||+++.|+++.|+++|++||||...
T Consensus 234 ~~~~~~l~~s~~~L~~--~~~~~f~~L~~f~~~~~i~~~~li~lW~~e~~i~~~ 285 (287)
T PF00931_consen 234 RSVFSALELSYDSLPD--ELRRCFLYLSIFPEGVPIPRERLIRLWVAEGFISSK 285 (287)
T ss_dssp HHHHHHHHHHHHSSHT--CCHHHHHHGGGSGTTS-EEHHHHHHHHTT-HHTC--
T ss_pred ccccccceechhcCCc--cHHHHHhhCcCCCCCceECHHHHHHHHHHCCCCccc
Confidence 5699999999999999 999999999999999999999999999999999764
No 4
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.75 E-value=3.7e-18 Score=210.87 Aligned_cols=303 Identities=17% Similarity=0.129 Sum_probs=160.2
Q ss_pred cceEEEEEeeccCCC-CccccCCCCceeEEEeCCCCCCCCCCCC-cccccccc-Ccccceeeecc----------ccCCc
Q 047321 467 DKVRHLGLKFEEGAS-FPMSIHGLNRLRTLLIYDQSPYNPSLSS-SILPELFN-KLACLRALVIR----------QSLRT 533 (807)
Q Consensus 467 ~~~r~L~l~~~~~~~-~~~~~~~l~~Lr~L~l~~~~~~~l~~~i-~~LP~~i~-~L~~L~~LdL~----------~~L~~ 533 (807)
.+++.|+++++.+.. .+..+..+++|++|++++| .+ ..+|..+. ++++|++|+|+ ..+.+
T Consensus 69 ~~v~~L~L~~~~i~~~~~~~~~~l~~L~~L~Ls~n-------~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~~~l~~ 141 (968)
T PLN00113 69 SRVVSIDLSGKNISGKISSAIFRLPYIQTINLSNN-------QLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPRGSIPN 141 (968)
T ss_pred CcEEEEEecCCCccccCChHHhCCCCCCEEECCCC-------ccCCcCChHHhccCCCCCEEECcCCccccccCccccCC
Confidence 468888888887654 5677888899999999887 44 36887765 88888888887 34667
Q ss_pred cCeeEecCccCCCccccccccccccccCcccccCCCCCCChhHHHHhhccCCCCCCeEEEEeeccCCCcchhhhhchhhH
Q 047321 534 LEKFVVGGGVDGSNTCRLESLKNLQLLRECGIEGLGNVSHLDEAERLQLYNQQNLLRLRLRFGRVVDGEDEERRRKNEKD 613 (807)
Q Consensus 534 L~~l~~~~~~~~~~~~~i~~L~~L~~L~~L~i~~l~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~ 613 (807)
|+.++++.+.. .+..+..+++|.+|+.|++.+.. .....+..+.++++|+.|++++|.+...... . ...
T Consensus 142 L~~L~Ls~n~~--~~~~p~~~~~l~~L~~L~L~~n~----l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~----~-l~~ 210 (968)
T PLN00113 142 LETLDLSNNML--SGEIPNDIGSFSSLKVLDLGGNV----LVGKIPNSLTNLTSLEFLTLASNQLVGQIPR----E-LGQ 210 (968)
T ss_pred CCEEECcCCcc--cccCChHHhcCCCCCEEECccCc----ccccCChhhhhCcCCCeeeccCCCCcCcCCh----H-HcC
Confidence 77787776652 12233456677777777776522 1112223466778888888887763110000 0 000
Q ss_pred HHHHHhhcCC----CCCCCC-CCCcc-cceEeccCCcCceeeCcccCCCCCCCCC---CCCC-CCCCCccccCccccccc
Q 047321 614 KQLLEALQPP----LSHLPP-LGKLP-LKKLELRDLESVKRVGNEFLGIEESSED---DPSS-SSSSPSVIAFPKLKSLE 683 (807)
Q Consensus 614 ~~~l~~l~p~----~~~lp~-l~~L~-L~~L~L~~~~~l~~i~~~~~~~~~l~~~---~~~~-~~~~~~~~~l~~L~~L~ 683 (807)
...|..+.-. ...+|. ++.++ |++|+++++.....++..+.....|..+ ++.. ...|..+..+++|+.|+
T Consensus 211 l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ 290 (968)
T PLN00113 211 MKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLD 290 (968)
T ss_pred cCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEE
Confidence 0000000000 012332 45555 5555555543322333333322222222 2211 12333344455555555
Q ss_pred ccCCCccccchhhhccccCCCCCCcccEEEEccCCCCCCCcccccCCCCccEEeeccCcccccccccccccCCCCCCCCe
Q 047321 684 IDGMKELEEWNYRITRKENISIMPRLSSLQIMNCRKLKALPDYLLQTIALQKLSIYSCDLLEELPILEDRRTTDIPRLSS 763 (807)
Q Consensus 684 l~~~~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~lp~~l~~l~~L~~L~l~~c~~l~~lP~~~~~~~~~l~~L~~ 763 (807)
+++|.-....|. .+..+++|+.|++++|.-...+|..+..+++|+.|++++|.....+| ..+..+++|+.
T Consensus 291 Ls~n~l~~~~p~------~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p----~~l~~~~~L~~ 360 (968)
T PLN00113 291 LSDNSLSGEIPE------LVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIP----KNLGKHNNLTV 360 (968)
T ss_pred CcCCeeccCCCh------hHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCC----hHHhCCCCCcE
Confidence 554421112221 23345556666665554444455555555666666665554444455 44455566666
Q ss_pred eeeccCCCcccCCccCCCCCcccccccccchhhh
Q 047321 764 LAIWYCPKLKVLPDYLLRTTTLQAGEQDYENEKF 797 (807)
Q Consensus 764 L~i~~c~~l~~lP~~l~~l~~L~~L~l~~~~~~~ 797 (807)
|++++|.....+|..+..+++|+.|++++|++..
T Consensus 361 L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~ 394 (968)
T PLN00113 361 LDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEG 394 (968)
T ss_pred EECCCCeeEeeCChhHhCcCCCCEEECcCCEecc
Confidence 6666555444556555555666666666665543
No 5
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.73 E-value=4.9e-18 Score=209.81 Aligned_cols=305 Identities=15% Similarity=0.077 Sum_probs=152.9
Q ss_pred cceEEEEEeeccCCC-CccccCCCCceeEEEeCCCCCCCCCCCCccccccccCcccceeeecc------------ccCCc
Q 047321 467 DKVRHLGLKFEEGAS-FPMSIHGLNRLRTLLIYDQSPYNPSLSSSILPELFNKLACLRALVIR------------QSLRT 533 (807)
Q Consensus 467 ~~~r~L~l~~~~~~~-~~~~~~~l~~Lr~L~l~~~~~~~l~~~i~~LP~~i~~L~~L~~LdL~------------~~L~~ 533 (807)
..+++|++++|.+.. .|..+.++++||+|++++|. ....+|..++++++|++|+|+ .++.+
T Consensus 140 ~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~------l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~ 213 (968)
T PLN00113 140 PNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNV------LVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKS 213 (968)
T ss_pred CCCCEEECcCCcccccCChHHhcCCCCCEEECccCc------ccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCC
Confidence 456666666666542 56666667777777776652 233566666666666666665 34455
Q ss_pred cCeeEecCccCCCccccccccccccccCcccccCCCCCCChhHHHHhhccCCCCCCeEEEEeeccCCCcchhhhhchhhH
Q 047321 534 LEKFVVGGGVDGSNTCRLESLKNLQLLRECGIEGLGNVSHLDEAERLQLYNQQNLLRLRLRFGRVVDGEDEERRRKNEKD 613 (807)
Q Consensus 534 L~~l~~~~~~~~~~~~~i~~L~~L~~L~~L~i~~l~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~ 613 (807)
|+.+.++.+.. .+..+..+.++.+|+.|++.+.. .....+..+.++++|+.|++++|.+...... . ...
T Consensus 214 L~~L~L~~n~l--~~~~p~~l~~l~~L~~L~L~~n~----l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~----~-l~~ 282 (968)
T PLN00113 214 LKWIYLGYNNL--SGEIPYEIGGLTSLNHLDLVYNN----LTGPIPSSLGNLKNLQYLFLYQNKLSGPIPP----S-IFS 282 (968)
T ss_pred ccEEECcCCcc--CCcCChhHhcCCCCCEEECcCce----eccccChhHhCCCCCCEEECcCCeeeccCch----h-Hhh
Confidence 55555554431 11223344555555555554421 1112223455666666666665543100000 0 000
Q ss_pred HHHHHhhcCC----CCCCCC-CCCcc-cceEeccCCcCceeeCcccCCCCCC---CCCCCCCC-CCCCccccCccccccc
Q 047321 614 KQLLEALQPP----LSHLPP-LGKLP-LKKLELRDLESVKRVGNEFLGIEES---SEDDPSSS-SSSPSVIAFPKLKSLE 683 (807)
Q Consensus 614 ~~~l~~l~p~----~~~lp~-l~~L~-L~~L~L~~~~~l~~i~~~~~~~~~l---~~~~~~~~-~~~~~~~~l~~L~~L~ 683 (807)
...|+.|.-. ...+|. +++++ |+.|+++++.....++..+.....| .+.++... ..|..++.+++|+.|+
T Consensus 283 l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~ 362 (968)
T PLN00113 283 LQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLD 362 (968)
T ss_pred ccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEE
Confidence 0000000000 012232 44555 5555555544333333322222222 22222211 2233344455555555
Q ss_pred ccCCCccccchhhhccccCCCCCCcccEEEEccCCCCCCCcccccCCCCccEEeeccCcccccccccccccCCCCCCCCe
Q 047321 684 IDGMKELEEWNYRITRKENISIMPRLSSLQIMNCRKLKALPDYLLQTIALQKLSIYSCDLLEELPILEDRRTTDIPRLSS 763 (807)
Q Consensus 684 l~~~~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~lp~~l~~l~~L~~L~l~~c~~l~~lP~~~~~~~~~l~~L~~ 763 (807)
++++.-....+. .+..+++|+.|++++|.-...+|..+..+++|+.|++++|...+.+| ..+..+++|+.
T Consensus 363 Ls~n~l~~~~p~------~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p----~~~~~l~~L~~ 432 (968)
T PLN00113 363 LSTNNLTGEIPE------GLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELP----SEFTKLPLVYF 432 (968)
T ss_pred CCCCeeEeeCCh------hHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECC----hhHhcCCCCCE
Confidence 554321112221 23345666666666664444566666667777777777765555566 55667777777
Q ss_pred eeeccCCCcccCCccCCCCCcccccccccchhhhh
Q 047321 764 LAIWYCPKLKVLPDYLLRTTTLQAGEQDYENEKFS 798 (807)
Q Consensus 764 L~i~~c~~l~~lP~~l~~l~~L~~L~l~~~~~~~~ 798 (807)
|++++|.....+|..+..+++|+.|++++|.+...
T Consensus 433 L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~ 467 (968)
T PLN00113 433 LDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGG 467 (968)
T ss_pred EECcCCcccCccChhhccCCCCcEEECcCceeeee
Confidence 77777665556666666777777777777776543
No 6
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.67 E-value=1.5e-18 Score=183.44 Aligned_cols=256 Identities=18% Similarity=0.214 Sum_probs=156.9
Q ss_pred cceEEEEEeeccCCCCccccCCCCceeEEEeCCCCCCCCCCCCcccccc-ccCcccceeeecc-----------ccCCcc
Q 047321 467 DKVRHLGLKFEEGASFPMSIHGLNRLRTLLIYDQSPYNPSLSSSILPEL-FNKLACLRALVIR-----------QSLRTL 534 (807)
Q Consensus 467 ~~~r~L~l~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~l~~~i~~LP~~-i~~L~~L~~LdL~-----------~~L~~L 534 (807)
+.+..|++++|.+...|..+...+++-+|+|++| .|..+|.+ +-+|..|-+|||| ..|..|
T Consensus 103 ~dLt~lDLShNqL~EvP~~LE~AKn~iVLNLS~N-------~IetIPn~lfinLtDLLfLDLS~NrLe~LPPQ~RRL~~L 175 (1255)
T KOG0444|consen 103 KDLTILDLSHNQLREVPTNLEYAKNSIVLNLSYN-------NIETIPNSLFINLTDLLFLDLSNNRLEMLPPQIRRLSML 175 (1255)
T ss_pred ccceeeecchhhhhhcchhhhhhcCcEEEEcccC-------ccccCCchHHHhhHhHhhhccccchhhhcCHHHHHHhhh
Confidence 4455566666666556666666666666666665 55555543 2355555555555 122222
Q ss_pred CeeEecCccCCCccccccccccccccCcccccCCCCCCChhHHHHhhccCCCCCCeEEEEeeccCCCcchhhhhchhhHH
Q 047321 535 EKFVVGGGVDGSNTCRLESLKNLQLLRECGIEGLGNVSHLDEAERLQLYNQQNLLRLRLRFGRVVDGEDEERRRKNEKDK 614 (807)
Q Consensus 535 ~~l~~~~~~~~~~~~~i~~L~~L~~L~~L~i~~l~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~ 614 (807)
+.+.++++. ....-+..|..++.|..|.+++.. .....++..+..+.+|..++++.|++
T Consensus 176 qtL~Ls~NP--L~hfQLrQLPsmtsL~vLhms~Tq---RTl~N~Ptsld~l~NL~dvDlS~N~L---------------- 234 (1255)
T KOG0444|consen 176 QTLKLSNNP--LNHFQLRQLPSMTSLSVLHMSNTQ---RTLDNIPTSLDDLHNLRDVDLSENNL---------------- 234 (1255)
T ss_pred hhhhcCCCh--hhHHHHhcCccchhhhhhhccccc---chhhcCCCchhhhhhhhhccccccCC----------------
Confidence 222233221 011223344444444445444321 11122233566667777777777764
Q ss_pred HHHHhhcCCCCCCCC-CCCcc-cceEeccCCcCceeeCcccCCCCCCCCCCCCCCCCCCccccCcccccccccCCCcccc
Q 047321 615 QLLEALQPPLSHLPP-LGKLP-LKKLELRDLESVKRVGNEFLGIEESSEDDPSSSSSSPSVIAFPKLKSLEIDGMKELEE 692 (807)
Q Consensus 615 ~~l~~l~p~~~~lp~-l~~L~-L~~L~L~~~~~l~~i~~~~~~~~~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~ 692 (807)
..+|. +-+++ |+.|+|+++ .++.+.-. .+...+|++|+++. +.|..
T Consensus 235 ----------p~vPecly~l~~LrrLNLS~N-~iteL~~~--------------------~~~W~~lEtLNlSr-NQLt~ 282 (1255)
T KOG0444|consen 235 ----------PIVPECLYKLRNLRRLNLSGN-KITELNMT--------------------EGEWENLETLNLSR-NQLTV 282 (1255)
T ss_pred ----------CcchHHHhhhhhhheeccCcC-ceeeeecc--------------------HHHHhhhhhhcccc-chhcc
Confidence 33443 56777 888888773 35544321 33567788888877 46777
Q ss_pred chhhhccccCCCCCCcccEEEEccCCCC--CCCcccccCCCCccEEeeccCcccccccccccccCCCCCCCCeeeeccCC
Q 047321 693 WNYRITRKENISIMPRLSSLQIMNCRKL--KALPDYLLQTIALQKLSIYSCDLLEELPILEDRRTTDIPRLSSLAIWYCP 770 (807)
Q Consensus 693 ~~~~~~~~~~~~~l~~L~~L~l~~c~~L--~~lp~~l~~l~~L~~L~l~~c~~l~~lP~~~~~~~~~l~~L~~L~i~~c~ 770 (807)
+|. .+..++.|+.|.+.++ +| ..+|.+++.+.+|+.+...+ ++|+-+| ++++.++.|+.|.++ |+
T Consensus 283 LP~------avcKL~kL~kLy~n~N-kL~FeGiPSGIGKL~~Levf~aan-N~LElVP----EglcRC~kL~kL~L~-~N 349 (1255)
T KOG0444|consen 283 LPD------AVCKLTKLTKLYANNN-KLTFEGIPSGIGKLIQLEVFHAAN-NKLELVP----EGLCRCVKLQKLKLD-HN 349 (1255)
T ss_pred chH------HHhhhHHHHHHHhccC-cccccCCccchhhhhhhHHHHhhc-cccccCc----hhhhhhHHHHHhccc-cc
Confidence 765 5667888888887766 44 46788888888888888877 5778788 778888888888876 57
Q ss_pred CcccCCccCCCCCcccccccccchh
Q 047321 771 KLKVLPDYLLRTTTLQAGEQDYENE 795 (807)
Q Consensus 771 ~l~~lP~~l~~l~~L~~L~l~~~~~ 795 (807)
.|-.||+.|.-|+.|+.||+..|+-
T Consensus 350 rLiTLPeaIHlL~~l~vLDlreNpn 374 (1255)
T KOG0444|consen 350 RLITLPEAIHLLPDLKVLDLRENPN 374 (1255)
T ss_pred ceeechhhhhhcCCcceeeccCCcC
Confidence 7778888888888888888888764
No 7
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.62 E-value=3.8e-15 Score=184.50 Aligned_cols=274 Identities=18% Similarity=0.222 Sum_probs=158.1
Q ss_pred CcceEEEEEeeccCCCCccccCCCCceeEEEeCCCCCCCCCCCCccccccccCcccceeeecc-----------ccCCcc
Q 047321 466 GDKVRHLGLKFEEGASFPMSIHGLNRLRTLLIYDQSPYNPSLSSSILPELFNKLACLRALVIR-----------QSLRTL 534 (807)
Q Consensus 466 ~~~~r~L~l~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~l~~~i~~LP~~i~~L~~L~~LdL~-----------~~L~~L 534 (807)
+.++|.|.+.++.+..+|..+ .+.+|+.|++.++ .+..+|.++..+++|++|+|+ .++.+|
T Consensus 588 p~~Lr~L~~~~~~l~~lP~~f-~~~~L~~L~L~~s-------~l~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~ls~l~~L 659 (1153)
T PLN03210 588 PPKLRLLRWDKYPLRCMPSNF-RPENLVKLQMQGS-------KLEKLWDGVHSLTGLRNIDLRGSKNLKEIPDLSMATNL 659 (1153)
T ss_pred CcccEEEEecCCCCCCCCCcC-CccCCcEEECcCc-------cccccccccccCCCCCEEECCCCCCcCcCCccccCCcc
Confidence 567888888888777777776 4788888888887 788888888999999999997 345566
Q ss_pred CeeEecCccCCCccccccccccccccCcccccCCCCCCChhHHHHhhccCCCCCCeEEEEeeccCCCcchhhhhchhhHH
Q 047321 535 EKFVVGGGVDGSNTCRLESLKNLQLLRECGIEGLGNVSHLDEAERLQLYNQQNLLRLRLRFGRVVDGEDEERRRKNEKDK 614 (807)
Q Consensus 535 ~~l~~~~~~~~~~~~~i~~L~~L~~L~~L~i~~l~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~ 614 (807)
+.+.+.++. .....+..+++|.+|+.|.+.++.++..++. . .++++|+.|.+++|.....- +. ..
T Consensus 660 e~L~L~~c~--~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~----~-i~l~sL~~L~Lsgc~~L~~~----p~----~~ 724 (1153)
T PLN03210 660 ETLKLSDCS--SLVELPSSIQYLNKLEDLDMSRCENLEILPT----G-INLKSLYRLNLSGCSRLKSF----PD----IS 724 (1153)
T ss_pred cEEEecCCC--CccccchhhhccCCCCEEeCCCCCCcCccCC----c-CCCCCCCEEeCCCCCCcccc----cc----cc
Confidence 777776543 1122334566677777777776555443321 1 25667777777765411000 00 00
Q ss_pred HHHHhhc---CCCCCCCCCCCcc--------------------------------cceEeccCCcCceeeCcccCCCCCC
Q 047321 615 QLLEALQ---PPLSHLPPLGKLP--------------------------------LKKLELRDLESVKRVGNEFLGIEES 659 (807)
Q Consensus 615 ~~l~~l~---p~~~~lp~l~~L~--------------------------------L~~L~L~~~~~l~~i~~~~~~~~~l 659 (807)
.-|+.|. .....+|....++ |+.|+|++|+.+..+|..+.....|
T Consensus 725 ~nL~~L~L~~n~i~~lP~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L 804 (1153)
T PLN03210 725 TNISWLDLDETAIEEFPSNLRLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKL 804 (1153)
T ss_pred CCcCeeecCCCccccccccccccccccccccccchhhccccccccchhhhhccccchheeCCCCCCccccChhhhCCCCC
Confidence 0000000 0001222222233 4444444444333333332222222
Q ss_pred ---CCCCCCCCCCCCccccCcccccccccCCCccccchhhhccccCCCCCCcccEEEEccCCCCCCCcccccCCCCccEE
Q 047321 660 ---SEDDPSSSSSSPSVIAFPKLKSLEIDGMKELEEWNYRITRKENISIMPRLSSLQIMNCRKLKALPDYLLQTIALQKL 736 (807)
Q Consensus 660 ---~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~lp~~l~~l~~L~~L 736 (807)
.+.+|......|....+++|+.|++++|..+..++. ..++|+.|+++++ .++.+|.++..+++|+.|
T Consensus 805 ~~L~Ls~C~~L~~LP~~~~L~sL~~L~Ls~c~~L~~~p~---------~~~nL~~L~Ls~n-~i~~iP~si~~l~~L~~L 874 (1153)
T PLN03210 805 EHLEIENCINLETLPTGINLESLESLDLSGCSRLRTFPD---------ISTNISDLNLSRT-GIEEVPWWIEKFSNLSFL 874 (1153)
T ss_pred CEEECCCCCCcCeeCCCCCccccCEEECCCCCccccccc---------cccccCEeECCCC-CCccChHHHhcCCCCCEE
Confidence 111221111111111344444444444444433332 1234555555544 455677777889999999
Q ss_pred eeccCcccccccccccccCCCCCCCCeeeeccCCCcccCC
Q 047321 737 SIYSCDLLEELPILEDRRTTDIPRLSSLAIWYCPKLKVLP 776 (807)
Q Consensus 737 ~l~~c~~l~~lP~~~~~~~~~l~~L~~L~i~~c~~l~~lP 776 (807)
++++|+++..+| ..+..+++|+.+++++|+.+..++
T Consensus 875 ~L~~C~~L~~l~----~~~~~L~~L~~L~l~~C~~L~~~~ 910 (1153)
T PLN03210 875 DMNGCNNLQRVS----LNISKLKHLETVDFSDCGALTEAS 910 (1153)
T ss_pred ECCCCCCcCccC----cccccccCCCeeecCCCccccccc
Confidence 999999999999 677889999999999999988665
No 8
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.57 E-value=6.2e-17 Score=171.43 Aligned_cols=112 Identities=22% Similarity=0.305 Sum_probs=94.4
Q ss_pred ccccCcccccccccCCCccccchhhhccccCCCCCCcccEEEEccCCCCCCCcccccCCCCccEEeeccCc-cccccccc
Q 047321 672 SVIAFPKLKSLEIDGMKELEEWNYRITRKENISIMPRLSSLQIMNCRKLKALPDYLLQTIALQKLSIYSCD-LLEELPIL 750 (807)
Q Consensus 672 ~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~lp~~l~~l~~L~~L~l~~c~-~l~~lP~~ 750 (807)
.+..+++|+.|+|++ +.++++.. ..+...+|++|+++.+ .|+.+|..+..++.|+.|.+.++. ..+-||
T Consensus 240 cly~l~~LrrLNLS~-N~iteL~~------~~~~W~~lEtLNlSrN-QLt~LP~avcKL~kL~kLy~n~NkL~FeGiP-- 309 (1255)
T KOG0444|consen 240 CLYKLRNLRRLNLSG-NKITELNM------TEGEWENLETLNLSRN-QLTVLPDAVCKLTKLTKLYANNNKLTFEGIP-- 309 (1255)
T ss_pred HHhhhhhhheeccCc-Cceeeeec------cHHHHhhhhhhccccc-hhccchHHHhhhHHHHHHHhccCcccccCCc--
Confidence 345789999999998 57777665 3446789999999988 899999999999999999997743 346688
Q ss_pred ccccCCCCCCCCeeeeccCCCcccCCccCCCCCcccccccccchhh
Q 047321 751 EDRRTTDIPRLSSLAIWYCPKLKVLPDYLLRTTTLQAGEQDYENEK 796 (807)
Q Consensus 751 ~~~~~~~l~~L~~L~i~~c~~l~~lP~~l~~l~~L~~L~l~~~~~~ 796 (807)
.+++.+..|+.+...+ ++|+-+|+++.+|..|+.|.++.|.+.
T Consensus 310 --SGIGKL~~Levf~aan-N~LElVPEglcRC~kL~kL~L~~NrLi 352 (1255)
T KOG0444|consen 310 --SGIGKLIQLEVFHAAN-NKLELVPEGLCRCVKLQKLKLDHNRLI 352 (1255)
T ss_pred --cchhhhhhhHHHHhhc-cccccCchhhhhhHHHHHhccccccee
Confidence 8899999999998885 789999999999999999999999764
No 9
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.48 E-value=1.3e-15 Score=154.17 Aligned_cols=290 Identities=17% Similarity=0.184 Sum_probs=164.2
Q ss_pred cceEEEEEeeccCCCCccccCCCCceeEEEeCCCCCCCCCCCCcccccccc-CcccceeeeccccCCccCeeEecCccCC
Q 047321 467 DKVRHLGLKFEEGASFPMSIHGLNRLRTLLIYDQSPYNPSLSSSILPELFN-KLACLRALVIRQSLRTLEKFVVGGGVDG 545 (807)
Q Consensus 467 ~~~r~L~l~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~l~~~i~~LP~~i~-~L~~L~~LdL~~~L~~L~~l~~~~~~~~ 545 (807)
.++..|+++.|++..+| +|..|..|..|++..| .|+.+|..++ +|.+|.+|||+ .+..
T Consensus 206 ~~L~~LyL~~Nki~~lP-ef~gcs~L~Elh~g~N-------~i~~lpae~~~~L~~l~vLDLR------------dNkl- 264 (565)
T KOG0472|consen 206 ESLELLYLRRNKIRFLP-EFPGCSLLKELHVGEN-------QIEMLPAEHLKHLNSLLVLDLR------------DNKL- 264 (565)
T ss_pred hhhHHHHhhhcccccCC-CCCccHHHHHHHhccc-------HHHhhHHHHhcccccceeeecc------------cccc-
Confidence 44445555555555444 5555666666655555 6666776666 67777777776 2211
Q ss_pred CccccccccccccccCcccccCCCCCCChhHHHHhhccCCCCCCeEEEEeeccCCCcchhhhhchhhHHHHHHhhcCCC-
Q 047321 546 SNTCRLESLKNLQLLRECGIEGLGNVSHLDEAERLQLYNQQNLLRLRLRFGRVVDGEDEERRRKNEKDKQLLEALQPPL- 624 (807)
Q Consensus 546 ~~~~~i~~L~~L~~L~~L~i~~l~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~l~p~~- 624 (807)
...+.++..|++|..|++++ +.++ ..+..++++ +|+.|.+.+|.+.-+. .......-.++|..++...
T Consensus 265 --ke~Pde~clLrsL~rLDlSN----N~is-~Lp~sLgnl-hL~~L~leGNPlrTiR---r~ii~~gT~~vLKyLrs~~~ 333 (565)
T KOG0472|consen 265 --KEVPDEICLLRSLERLDLSN----NDIS-SLPYSLGNL-HLKFLALEGNPLRTIR---REIISKGTQEVLKYLRSKIK 333 (565)
T ss_pred --ccCchHHHHhhhhhhhcccC----Cccc-cCCcccccc-eeeehhhcCCchHHHH---HHHHcccHHHHHHHHHHhhc
Confidence 11122333444455555554 1111 122356676 7777777776531000 0001111234455444311
Q ss_pred -------------------CCCCCCCCcc-cceEeccCCcCceeeCcccCCCC------CCCCCCCCCCCCCCccccCcc
Q 047321 625 -------------------SHLPPLGKLP-LKKLELRDLESVKRVGNEFLGIE------ESSEDDPSSSSSSPSVIAFPK 678 (807)
Q Consensus 625 -------------------~~lp~l~~L~-L~~L~L~~~~~l~~i~~~~~~~~------~l~~~~~~~~~~~~~~~~l~~ 678 (807)
..+|....+. .+.|++++ ..++.+|.+.+... ...+..+...+.|..+..+..
T Consensus 334 ~dglS~se~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~-~qlt~VPdEVfea~~~~~Vt~VnfskNqL~elPk~L~~lke 412 (565)
T KOG0472|consen 334 DDGLSQSEGGTETAMTLPSESFPDIYAIITTKILDVSD-KQLTLVPDEVFEAAKSEIVTSVNFSKNQLCELPKRLVELKE 412 (565)
T ss_pred cCCCCCCcccccccCCCCCCcccchhhhhhhhhhcccc-cccccCCHHHHHHhhhcceEEEecccchHhhhhhhhHHHHH
Confidence 2344444555 78888876 45777776654322 222333334444443333333
Q ss_pred cccccccCCCccccchhhhccccCCCCCCcccEEEEccCCCCCCCcccccCCCCccEEeeccCcccccccc---------
Q 047321 679 LKSLEIDGMKELEEWNYRITRKENISIMPRLSSLQIMNCRKLKALPDYLLQTIALQKLSIYSCDLLEELPI--------- 749 (807)
Q Consensus 679 L~~L~l~~~~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~lp~~l~~l~~L~~L~l~~c~~l~~lP~--------- 749 (807)
+.+.-+... +..+|+. ..+..+++|..|+++++ -|..+|..++.+..|+.|+|+.+ .+..+|.
T Consensus 413 lvT~l~lsn-n~isfv~-----~~l~~l~kLt~L~L~NN-~Ln~LP~e~~~lv~Lq~LnlS~N-rFr~lP~~~y~lq~lE 484 (565)
T KOG0472|consen 413 LVTDLVLSN-NKISFVP-----LELSQLQKLTFLDLSNN-LLNDLPEEMGSLVRLQTLNLSFN-RFRMLPECLYELQTLE 484 (565)
T ss_pred HHHHHHhhc-Cccccch-----HHHHhhhcceeeecccc-hhhhcchhhhhhhhhheeccccc-ccccchHHHhhHHHHH
Confidence 333333332 3334433 24456777777777766 57777777777777777777764 4444441
Q ss_pred -----------cccccCCCCCCCCeeeeccCCCcccCCccCCCCCcccccccccchhhhh
Q 047321 750 -----------LEDRRTTDIPRLSSLAIWYCPKLKVLPDYLLRTTTLQAGEQDYENEKFS 798 (807)
Q Consensus 750 -----------~~~~~~~~l~~L~~L~i~~c~~l~~lP~~l~~l~~L~~L~l~~~~~~~~ 798 (807)
+....+.++.+|..|++.+ +.+..+|..++++++|++|++++|+|.-+
T Consensus 485 tllas~nqi~~vd~~~l~nm~nL~tLDL~n-Ndlq~IPp~LgnmtnL~hLeL~gNpfr~P 543 (565)
T KOG0472|consen 485 TLLASNNQIGSVDPSGLKNMRNLTTLDLQN-NDLQQIPPILGNMTNLRHLELDGNPFRQP 543 (565)
T ss_pred HHHhccccccccChHHhhhhhhcceeccCC-CchhhCChhhccccceeEEEecCCccCCC
Confidence 1113467889999999986 77999999999999999999999998744
No 10
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.47 E-value=8.2e-15 Score=154.88 Aligned_cols=288 Identities=15% Similarity=0.184 Sum_probs=155.8
Q ss_pred CCcceEEEEEeeccCCC-CccccCCCCceeEEEeCCCCCCCCCCCCccccccccCcccceeeecc------------ccC
Q 047321 465 FGDKVRHLGLKFEEGAS-FPMSIHGLNRLRTLLIYDQSPYNPSLSSSILPELFNKLACLRALVIR------------QSL 531 (807)
Q Consensus 465 ~~~~~r~L~l~~~~~~~-~~~~~~~l~~Lr~L~l~~~~~~~l~~~i~~LP~~i~~L~~L~~LdL~------------~~L 531 (807)
.+..++.|++++|.+.. -+..|.++++|+.+.+..| .+..+|...+...||..|+|. .-+
T Consensus 76 lp~~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N-------~Lt~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l 148 (873)
T KOG4194|consen 76 LPSQTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKN-------ELTRIPRFGHESGHLEKLDLRHNLISSVTSEELSAL 148 (873)
T ss_pred CccceeeeeccccccccCcHHHHhcCCcceeeeeccc-------hhhhcccccccccceeEEeeeccccccccHHHHHhH
Confidence 46778889999998765 4566788999999999887 777788777777777777776 111
Q ss_pred ------------------------CccCeeEecCccCCCccccccccccccccCcccccCCCCCCChhHHHHhhccCCCC
Q 047321 532 ------------------------RTLEKFVVGGGVDGSNTCRLESLKNLQLLRECGIEGLGNVSHLDEAERLQLYNQQN 587 (807)
Q Consensus 532 ------------------------~~L~~l~~~~~~~~~~~~~i~~L~~L~~L~~L~i~~l~~~~~~~~~~~~~l~~l~~ 587 (807)
.++..+++..+.++.. .......|++|-.|.+++ +..+......++++++
T Consensus 149 ~alrslDLSrN~is~i~~~sfp~~~ni~~L~La~N~It~l--~~~~F~~lnsL~tlkLsr----NrittLp~r~Fk~L~~ 222 (873)
T KOG4194|consen 149 PALRSLDLSRNLISEIPKPSFPAKVNIKKLNLASNRITTL--ETGHFDSLNSLLTLKLSR----NRITTLPQRSFKRLPK 222 (873)
T ss_pred hhhhhhhhhhchhhcccCCCCCCCCCceEEeecccccccc--ccccccccchheeeeccc----CcccccCHHHhhhcch
Confidence 1233444444432111 111122333344444433 2222333345777899
Q ss_pred CCeEEEEeeccCCCcchhhhhchhhHHHHHHhhcCCCCCCCCCCCcc-cceEeccCCcCceee-CcccCCCCCCCCCCCC
Q 047321 588 LLRLRLRFGRVVDGEDEERRRKNEKDKQLLEALQPPLSHLPPLGKLP-LKKLELRDLESVKRV-GNEFLGIEESSEDDPS 665 (807)
Q Consensus 588 L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~l~p~~~~lp~l~~L~-L~~L~L~~~~~l~~i-~~~~~~~~~l~~~~~~ 665 (807)
|+.|+|..|.+...++ -.+..|+ |+.|.|.+++ +..+ ...|++...++.++..
T Consensus 223 L~~LdLnrN~irive~------------------------ltFqgL~Sl~nlklqrN~-I~kL~DG~Fy~l~kme~l~L~ 277 (873)
T KOG4194|consen 223 LESLDLNRNRIRIVEG------------------------LTFQGLPSLQNLKLQRND-ISKLDDGAFYGLEKMEHLNLE 277 (873)
T ss_pred hhhhhccccceeeehh------------------------hhhcCchhhhhhhhhhcC-cccccCcceeeecccceeecc
Confidence 9999999887421111 0133444 5555554422 2222 2233333333322222
Q ss_pred CCC----CCCccccCcccccccccCCCccccchhhhccccCCCCCCcccEEEEccCCCCCCCccc---------------
Q 047321 666 SSS----SSPSVIAFPKLKSLEIDGMKELEEWNYRITRKENISIMPRLSSLQIMNCRKLKALPDY--------------- 726 (807)
Q Consensus 666 ~~~----~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~lp~~--------------- 726 (807)
... ....+.++.+|+.|++++ +.+..+.. +.....++|+.|+++++ .++.+|++
T Consensus 278 ~N~l~~vn~g~lfgLt~L~~L~lS~-NaI~rih~-----d~WsftqkL~~LdLs~N-~i~~l~~~sf~~L~~Le~LnLs~ 350 (873)
T KOG4194|consen 278 TNRLQAVNEGWLFGLTSLEQLDLSY-NAIQRIHI-----DSWSFTQKLKELDLSSN-RITRLDEGSFRVLSQLEELNLSH 350 (873)
T ss_pred cchhhhhhcccccccchhhhhccch-hhhheeec-----chhhhcccceeEecccc-ccccCChhHHHHHHHhhhhcccc
Confidence 110 011233555666666655 23322221 12223455555555555 45444431
Q ss_pred ----------ccCCCCccEEeeccCcccccccccccccCCCCCCCCeeeeccCCCcccCC-ccCCCCCcccccccccchh
Q 047321 727 ----------LLQTIALQKLSIYSCDLLEELPILEDRRTTDIPRLSSLAIWYCPKLKVLP-DYLLRTTTLQAGEQDYENE 795 (807)
Q Consensus 727 ----------l~~l~~L~~L~l~~c~~l~~lP~~~~~~~~~l~~L~~L~i~~c~~l~~lP-~~l~~l~~L~~L~l~~~~~ 795 (807)
+..+++|++|+|+++. +...-.-....+..+++|+.|.+.+ ++++++| ..+..+.+|+.||+.+|.+
T Consensus 351 Nsi~~l~e~af~~lssL~~LdLr~N~-ls~~IEDaa~~f~gl~~LrkL~l~g-Nqlk~I~krAfsgl~~LE~LdL~~Nai 428 (873)
T KOG4194|consen 351 NSIDHLAEGAFVGLSSLHKLDLRSNE-LSWCIEDAAVAFNGLPSLRKLRLTG-NQLKSIPKRAFSGLEALEHLDLGDNAI 428 (873)
T ss_pred cchHHHHhhHHHHhhhhhhhcCcCCe-EEEEEecchhhhccchhhhheeecC-ceeeecchhhhccCcccceecCCCCcc
Confidence 2334566666665532 2111000002345688899998887 6788888 6788889999999988877
Q ss_pred hhhh
Q 047321 796 KFSQ 799 (807)
Q Consensus 796 ~~~~ 799 (807)
-..+
T Consensus 429 aSIq 432 (873)
T KOG4194|consen 429 ASIQ 432 (873)
T ss_pred eeec
Confidence 5443
No 11
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.47 E-value=5.7e-12 Score=155.13 Aligned_cols=293 Identities=14% Similarity=0.170 Sum_probs=181.1
Q ss_pred CCccccccchHHHHHHHHhCCCCCCCCCceEEEEEccCCChHHHHHHHHHcCcccccccceEEEEEeCC-CCCHHHHHHH
Q 047321 103 EGGVCGRVDEKNELLSKLLCGSSEQQKGLDVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSN-TFEEISVAKA 181 (807)
Q Consensus 103 ~~~~vGR~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~-~~~~~~~~~~ 181 (807)
.+++|-|..-.+++-+ ....+++.|+|++|.||||++..+... ++.++|+++.. ..+...+...
T Consensus 13 ~~~~~~R~rl~~~l~~---------~~~~~~~~v~apaG~GKTtl~~~~~~~------~~~~~w~~l~~~d~~~~~f~~~ 77 (903)
T PRK04841 13 LHNTVVRERLLAKLSG---------ANNYRLVLVTSPAGYGKTTLISQWAAG------KNNLGWYSLDESDNQPERFASY 77 (903)
T ss_pred ccccCcchHHHHHHhc---------ccCCCeEEEECCCCCCHHHHHHHHHHh------CCCeEEEecCcccCCHHHHHHH
Confidence 3467777755554432 236789999999999999999998752 22588999864 4455666666
Q ss_pred HHHHcCCCCCC-------------CccHHHHHHHHHHHHh--CCceEEEEeCCCCCCccChHHHHHh-hcCCCCCcEEEE
Q 047321 182 IIEGLGVSAFG-------------LSEFESLMKQIQEYIT--GKKIFLVLDDVWDGDYKKWDPFFSC-LKNGHHESKILI 245 (807)
Q Consensus 182 i~~~l~~~~~~-------------~~~~~~~~~~l~~~l~--~k~~LlVlDdv~~~~~~~~~~l~~~-l~~~~~gs~Ili 245 (807)
++..++..... ..+...+...+...+. +.+++||+||+..-+.......... +....++.++||
T Consensus 78 l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~lvlDD~h~~~~~~~~~~l~~l~~~~~~~~~lv~ 157 (903)
T PRK04841 78 LIAALQQATNGHCSKSEALAQKRQYASLSSLFAQLFIELADWHQPLYLVIDDYHLITNPEIHEAMRFFLRHQPENLTLVV 157 (903)
T ss_pred HHHHHHHhcCcccchhhhhhccCCcCCHHHHHHHHHHHHhcCCCCEEEEEeCcCcCCChHHHHHHHHHHHhCCCCeEEEE
Confidence 66666421111 1122233333333332 6799999999966544444444444 444456678889
Q ss_pred EcCCHH---HHHHhCCCceEeCC----CCChhhHHHHHHHHHhccCCccCccchHHHHHHHHHHcCCCHHHHHHHHHHhh
Q 047321 246 TTHDRS---VALQLGSIDIIPVK----ELGEGECWLLFKQIAFLRRSFEDCEKLEPIGRKIASKCKGLPLAAKVIGNLLR 318 (807)
Q Consensus 246 TTR~~~---v~~~~~~~~~~~l~----~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~~~~I~~~c~glPLai~~~~~~l~ 318 (807)
|||... ...........++. +|+.+|+.++|....... --.+.+..|.+.|+|.|+++..++..++
T Consensus 158 ~sR~~~~~~~~~l~~~~~~~~l~~~~l~f~~~e~~~ll~~~~~~~-------~~~~~~~~l~~~t~Gwp~~l~l~~~~~~ 230 (903)
T PRK04841 158 LSRNLPPLGIANLRVRDQLLEIGSQQLAFDHQEAQQFFDQRLSSP-------IEAAESSRLCDDVEGWATALQLIALSAR 230 (903)
T ss_pred EeCCCCCCchHhHHhcCcceecCHHhCCCCHHHHHHHHHhccCCC-------CCHHHHHHHHHHhCChHHHHHHHHHHHh
Confidence 999842 11111112345566 999999999997654211 1234578999999999999999887775
Q ss_pred cCCC-HHHHHHHHhcccccccc-CCCCchhhHHh-cccCCCCccchhhhhhhhccCCCcceechhHHHHHHHhcCCCCCC
Q 047321 319 SKNT-AKEWHIILDSEMWKVQE-IGQGILAPLLL-SYNDLPSNSMVKRCFSYCAVFPKDYNMNKRELINLWMTQGYLNAD 395 (807)
Q Consensus 319 ~~~~-~~~w~~~~~~~~~~~~~-~~~~i~~~l~l-sy~~L~~~~~~k~cfl~~s~fp~~~~i~~~~li~~W~aeg~i~~~ 395 (807)
.... .... . +.+.. ....+...+.- .+..||+ +.++.+...|+++ .++.+.+-. +...
T Consensus 231 ~~~~~~~~~---~----~~~~~~~~~~~~~~l~~~v~~~l~~--~~~~~l~~~a~~~---~~~~~l~~~------l~~~- 291 (903)
T PRK04841 231 QNNSSLHDS---A----RRLAGINASHLSDYLVEEVLDNVDL--ETRHFLLRCSVLR---SMNDALIVR------VTGE- 291 (903)
T ss_pred hCCCchhhh---h----HhhcCCCchhHHHHHHHHHHhcCCH--HHHHHHHHhcccc---cCCHHHHHH------HcCC-
Confidence 4422 1110 0 11111 11234444333 3789999 8999999999996 234332211 1111
Q ss_pred CCchHHHHHHHHHHHHhhcCCcceeccCCCCCccEEEEChhHHHHHHHhh
Q 047321 396 EDEEMEMIGEEYFNILATRSFFQEFQKNDDDDFTSCKMHDIVNDFAQFVS 445 (807)
Q Consensus 396 ~~~~~e~~~~~~~~~L~~rsll~~~~~~~~~~~~~~~mHdlv~~~a~~~~ 445 (807)
+.+.+.+++|.++++|.....+ .+ ..|+.|+++++++++..
T Consensus 292 ------~~~~~~L~~l~~~~l~~~~~~~-~~--~~yr~H~L~r~~l~~~l 332 (903)
T PRK04841 292 ------ENGQMRLEELERQGLFIQRMDD-SG--EWFRYHPLFASFLRHRC 332 (903)
T ss_pred ------CcHHHHHHHHHHCCCeeEeecC-CC--CEEehhHHHHHHHHHHH
Confidence 2246789999999997542211 11 35888999999998775
No 12
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.43 E-value=5.5e-13 Score=153.52 Aligned_cols=101 Identities=20% Similarity=0.191 Sum_probs=77.1
Q ss_pred CcccccccccCCCccccchhhhccccCCCCCCcccEEEEccCCCCCCCcccccCCCCccEEeeccCcccccccccccccC
Q 047321 676 FPKLKSLEIDGMKELEEWNYRITRKENISIMPRLSSLQIMNCRKLKALPDYLLQTIALQKLSIYSCDLLEELPILEDRRT 755 (807)
Q Consensus 676 l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~lp~~l~~l~~L~~L~l~~c~~l~~lP~~~~~~~ 755 (807)
.++|+.|.+++ +.+..+|. .+++|+.|++++| .+..+|.. .++|+.|+++++ .+..+| .
T Consensus 361 p~~L~~L~Ls~-N~L~~LP~---------l~~~L~~LdLs~N-~Lt~LP~l---~s~L~~LdLS~N-~LssIP----~-- 419 (788)
T PRK15387 361 PSELYKLWAYN-NRLTSLPA---------LPSGLKELIVSGN-RLTSLPVL---PSELKELMVSGN-RLTSLP----M-- 419 (788)
T ss_pred Ccccceehhhc-cccccCcc---------cccccceEEecCC-cccCCCCc---ccCCCEEEccCC-cCCCCC----c--
Confidence 35677777776 35665553 2457999999888 78888854 367899999995 578888 2
Q ss_pred CCCCCCCeeeeccCCCcccCCccCCCCCcccccccccchhhhhh
Q 047321 756 TDIPRLSSLAIWYCPKLKVLPDYLLRTTTLQAGEQDYENEKFSQ 799 (807)
Q Consensus 756 ~~l~~L~~L~i~~c~~l~~lP~~l~~l~~L~~L~l~~~~~~~~~ 799 (807)
.+.+|+.|++++ ++++.+|..+.++++|+.|++++|++....
T Consensus 420 -l~~~L~~L~Ls~-NqLt~LP~sl~~L~~L~~LdLs~N~Ls~~~ 461 (788)
T PRK15387 420 -LPSGLLSLSVYR-NQLTRLPESLIHLSSETTVNLEGNPLSERT 461 (788)
T ss_pred -chhhhhhhhhcc-CcccccChHHhhccCCCeEECCCCCCCchH
Confidence 245788889887 568899999999999999999999987543
No 13
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=99.39 E-value=1.4e-10 Score=128.18 Aligned_cols=317 Identities=15% Similarity=0.071 Sum_probs=182.1
Q ss_pred cCCccccccchHHHHHHHHhCCCCCCCCCceEEEEEccCCChHHHHHHHHHcCcccccccceEEEEEeCCCCCHHHHHHH
Q 047321 102 DEGGVCGRVDEKNELLSKLLCGSSEQQKGLDVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSNTFEEISVAKA 181 (807)
Q Consensus 102 ~~~~~vGR~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~ 181 (807)
.+..++||++++++|...+...-. +.....+.|+|++|+|||++++.++++.......-..+++++....+...++..
T Consensus 28 ~P~~l~~Re~e~~~l~~~l~~~~~--~~~~~~~lI~G~~GtGKT~l~~~v~~~l~~~~~~~~~v~in~~~~~~~~~~~~~ 105 (394)
T PRK00411 28 VPENLPHREEQIEELAFALRPALR--GSRPLNVLIYGPPGTGKTTTVKKVFEELEEIAVKVVYVYINCQIDRTRYAIFSE 105 (394)
T ss_pred cCCCCCCHHHHHHHHHHHHHHHhC--CCCCCeEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEECCcCCCHHHHHHH
Confidence 456799999999999999854321 224456789999999999999999984322221234567777777778888999
Q ss_pred HHHHcCCCC--CCCccHHHHHHHHHHHHh--CCceEEEEeCCCCCC-ccChHHHHHhhc--CCCCCcE--EEEEcCCHHH
Q 047321 182 IIEGLGVSA--FGLSEFESLMKQIQEYIT--GKKIFLVLDDVWDGD-YKKWDPFFSCLK--NGHHESK--ILITTHDRSV 252 (807)
Q Consensus 182 i~~~l~~~~--~~~~~~~~~~~~l~~~l~--~k~~LlVlDdv~~~~-~~~~~~l~~~l~--~~~~gs~--IliTTR~~~v 252 (807)
|+.++.... ....+.++....+.+.+. +++.+||+|+++.-. ....+.+...+. ....+++ +|.++.+..+
T Consensus 106 i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~viviDE~d~l~~~~~~~~l~~l~~~~~~~~~~~v~vI~i~~~~~~ 185 (394)
T PRK00411 106 IARQLFGHPPPSSGLSFDELFDKIAEYLDERDRVLIVALDDINYLFEKEGNDVLYSLLRAHEEYPGARIGVIGISSDLTF 185 (394)
T ss_pred HHHHhcCCCCCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCHhHhhccCCchHHHHHHHhhhccCCCeEEEEEEECCcch
Confidence 999887522 122345666777777765 456899999996532 111222322222 1122333 5666665544
Q ss_pred HHHhC-------CCceEeCCCCChhhHHHHHHHHHhccC--CccCccchHHHHHHHHHHcCCCHHHHHHHHHHh--h--c
Q 047321 253 ALQLG-------SIDIIPVKELGEGECWLLFKQIAFLRR--SFEDCEKLEPIGRKIASKCKGLPLAAKVIGNLL--R--S 319 (807)
Q Consensus 253 ~~~~~-------~~~~~~l~~L~~~~~~~Lf~~~a~~~~--~~~~~~~~~~~~~~I~~~c~glPLai~~~~~~l--~--~ 319 (807)
..... ....+.+++++.++..+++..++...- ..-.+..+..+++......|..+.|+.++-... . .
T Consensus 186 ~~~l~~~~~s~~~~~~i~f~py~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~r~a~~ll~~a~~~a~~~ 265 (394)
T PRK00411 186 LYILDPRVKSVFRPEEIYFPPYTADEIFDILKDRVEEGFYPGVVDDEVLDLIADLTAREHGDARVAIDLLRRAGLIAERE 265 (394)
T ss_pred hhhcCHHHHhcCCcceeecCCCCHHHHHHHHHHHHHhhcccCCCCHhHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHc
Confidence 33221 124678999999999999998763211 111222233333333333566777777664332 1 1
Q ss_pred -CC--CHHHHHHHHhccccccccCCCCchhhHHhcccCCCCccchhhhhhhhccC-CC-cceechhHHHHH--HHhcCCC
Q 047321 320 -KN--TAKEWHIILDSEMWKVQEIGQGILAPLLLSYNDLPSNSMVKRCFSYCAVF-PK-DYNMNKRELINL--WMTQGYL 392 (807)
Q Consensus 320 -~~--~~~~w~~~~~~~~~~~~~~~~~i~~~l~lsy~~L~~~~~~k~cfl~~s~f-p~-~~~i~~~~li~~--W~aeg~i 392 (807)
.. +.+....+.+... .....-.+..||. +.|..+..++.. .. ...+....+... .+++.+-
T Consensus 266 ~~~~I~~~~v~~a~~~~~----------~~~~~~~~~~L~~--~~k~~L~ai~~~~~~~~~~~~~~~i~~~y~~l~~~~~ 333 (394)
T PRK00411 266 GSRKVTEEDVRKAYEKSE----------IVHLSEVLRTLPL--HEKLLLRAIVRLLKKGGDEVTTGEVYEEYKELCEELG 333 (394)
T ss_pred CCCCcCHHHHHHHHHHHH----------HHHHHHHHhcCCH--HHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHcC
Confidence 11 4555555554321 1223445788998 555554443322 11 123444444422 2332211
Q ss_pred CCCCCchHHHHHHHHHHHHhhcCCcceecc--CCCCCccEEEECh
Q 047321 393 NADEDEEMEMIGEEYFNILATRSFFQEFQK--NDDDDFTSCKMHD 435 (807)
Q Consensus 393 ~~~~~~~~e~~~~~~~~~L~~rsll~~~~~--~~~~~~~~~~mHd 435 (807)
.. ..-.....+|+++|...|+|+.... +..|+.+.++++.
T Consensus 334 ~~---~~~~~~~~~~l~~L~~~glI~~~~~~~g~~g~~~~~~~~~ 375 (394)
T PRK00411 334 YE---PRTHTRFYEYINKLDMLGIINTRYSGKGGRGRTRLISLSY 375 (394)
T ss_pred CC---cCcHHHHHHHHHHHHhcCCeEEEEecCCCCCCeEEEEecC
Confidence 10 0012334669999999999986542 3356656666653
No 14
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.34 E-value=2.9e-14 Score=158.80 Aligned_cols=196 Identities=24% Similarity=0.316 Sum_probs=96.3
Q ss_pred hhccCCCCCCeEEEEeeccCCCcchhhhhchhhHHHHHHhhcCCCCCCCC-CCCcc-cceEeccCCcCceeeCcccCCCC
Q 047321 580 LQLYNQQNLLRLRLRFGRVVDGEDEERRRKNEKDKQLLEALQPPLSHLPP-LGKLP-LKKLELRDLESVKRVGNEFLGIE 657 (807)
Q Consensus 580 ~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~l~p~~~~lp~-l~~L~-L~~L~L~~~~~l~~i~~~~~~~~ 657 (807)
..+..+.+|+.|....|.++..+.. .........+..-.-....+|+ ++.+. |++|+|.. +.+..+|..+....
T Consensus 258 ~wi~~~~nle~l~~n~N~l~~lp~r---i~~~~~L~~l~~~~nel~yip~~le~~~sL~tLdL~~-N~L~~lp~~~l~v~ 333 (1081)
T KOG0618|consen 258 EWIGACANLEALNANHNRLVALPLR---ISRITSLVSLSAAYNELEYIPPFLEGLKSLRTLDLQS-NNLPSLPDNFLAVL 333 (1081)
T ss_pred HHHHhcccceEecccchhHHhhHHH---HhhhhhHHHHHhhhhhhhhCCCcccccceeeeeeehh-ccccccchHHHhhh
Confidence 4567789999999988875322111 0001111111111111145555 66688 99999986 44666665432111
Q ss_pred --CCCCCCCCCC----------------------------CCCCccccCcccccccccCCCccccchhhhccccCCCCCC
Q 047321 658 --ESSEDDPSSS----------------------------SSSPSVIAFPKLKSLEIDGMKELEEWNYRITRKENISIMP 707 (807)
Q Consensus 658 --~l~~~~~~~~----------------------------~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~l~ 707 (807)
.+...+.+.. ...+.+.+|++|+.|+|++ +.+..+|. ..+.+++
T Consensus 334 ~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsy-NrL~~fpa-----s~~~kle 407 (1081)
T KOG0618|consen 334 NASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSY-NRLNSFPA-----SKLRKLE 407 (1081)
T ss_pred hHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecc-cccccCCH-----HHHhchH
Confidence 1111111111 1122233444555555544 23444443 2233444
Q ss_pred cccEEEEccCCCCCCCcccccCCCCccEEeeccCcccccccccccccCCCCCCCCeeeeccCCCccc--CCccCCCCCcc
Q 047321 708 RLSSLQIMNCRKLKALPDYLLQTIALQKLSIYSCDLLEELPILEDRRTTDIPRLSSLAIWYCPKLKV--LPDYLLRTTTL 785 (807)
Q Consensus 708 ~L~~L~l~~c~~L~~lp~~l~~l~~L~~L~l~~c~~l~~lP~~~~~~~~~l~~L~~L~i~~c~~l~~--lP~~l~~l~~L 785 (807)
.|+.|.++++ +|+.||..+..+..|++|...+ +.+..+| .+..++.|+.++++ |++|.. +|..... ++|
T Consensus 408 ~LeeL~LSGN-kL~~Lp~tva~~~~L~tL~ahs-N~l~~fP-----e~~~l~qL~~lDlS-~N~L~~~~l~~~~p~-p~L 478 (1081)
T KOG0618|consen 408 ELEELNLSGN-KLTTLPDTVANLGRLHTLRAHS-NQLLSFP-----ELAQLPQLKVLDLS-CNNLSEVTLPEALPS-PNL 478 (1081)
T ss_pred HhHHHhcccc-hhhhhhHHHHhhhhhHHHhhcC-Cceeech-----hhhhcCcceEEecc-cchhhhhhhhhhCCC-ccc
Confidence 4555555554 4555555555555555555444 2344444 34566777777777 455553 3433322 677
Q ss_pred cccccccch
Q 047321 786 QAGEQDYEN 794 (807)
Q Consensus 786 ~~L~l~~~~ 794 (807)
++||+++|.
T Consensus 479 kyLdlSGN~ 487 (1081)
T KOG0618|consen 479 KYLDLSGNT 487 (1081)
T ss_pred ceeeccCCc
Confidence 888887775
No 15
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=99.32 E-value=2e-10 Score=119.89 Aligned_cols=183 Identities=15% Similarity=0.155 Sum_probs=118.3
Q ss_pred CceEEEEEccCCChHHHHHHHHHcCcccccccceEEEEEeCCCCCHHHHHHHHHHHcCCCCCCCccHHHHHHHHHHH---
Q 047321 130 GLDVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSNTFEEISVAKAIIEGLGVSAFGLSEFESLMKQIQEY--- 206 (807)
Q Consensus 130 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~--- 206 (807)
...++.|+|++|+||||+++.+++..... .+ ...|+ +....+..+++..|+..++....+. +.......+.+.
T Consensus 42 ~~~~~~l~G~~G~GKTtl~~~l~~~l~~~-~~-~~~~~-~~~~~~~~~~l~~i~~~lG~~~~~~-~~~~~~~~l~~~l~~ 117 (269)
T TIGR03015 42 REGFILITGEVGAGKTTLIRNLLKRLDQE-RV-VAAKL-VNTRVDAEDLLRMVAADFGLETEGR-DKAALLRELEDFLIE 117 (269)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHhcCCC-Ce-EEeee-eCCCCCHHHHHHHHHHHcCCCCCCC-CHHHHHHHHHHHHHH
Confidence 35689999999999999999999853311 11 12233 3344577788889998887654332 222233333322
Q ss_pred --HhCCceEEEEeCCCCCCccChHHHHHhhcCC---CCCcEEEEEcCCHHHHHHhC----------CCceEeCCCCChhh
Q 047321 207 --ITGKKIFLVLDDVWDGDYKKWDPFFSCLKNG---HHESKILITTHDRSVALQLG----------SIDIIPVKELGEGE 271 (807)
Q Consensus 207 --l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~---~~gs~IliTTR~~~v~~~~~----------~~~~~~l~~L~~~~ 271 (807)
..+++.++|+||++.-+...++.+....... .....|++|... .....+. ....+++++++.+|
T Consensus 118 ~~~~~~~~vliiDe~~~l~~~~~~~l~~l~~~~~~~~~~~~vvl~g~~-~~~~~l~~~~~~~l~~r~~~~~~l~~l~~~e 196 (269)
T TIGR03015 118 QFAAGKRALLVVDEAQNLTPELLEELRMLSNFQTDNAKLLQIFLVGQP-EFRETLQSPQLQQLRQRIIASCHLGPLDREE 196 (269)
T ss_pred HHhCCCCeEEEEECcccCCHHHHHHHHHHhCcccCCCCeEEEEEcCCH-HHHHHHcCchhHHHHhheeeeeeCCCCCHHH
Confidence 2678899999999887656666665433211 122244555543 3322221 12367899999999
Q ss_pred HHHHHHHHHhccCCccCccchHHHHHHHHHHcCCCHHHHHHHHHHh
Q 047321 272 CWLLFKQIAFLRRSFEDCEKLEPIGRKIASKCKGLPLAAKVIGNLL 317 (807)
Q Consensus 272 ~~~Lf~~~a~~~~~~~~~~~~~~~~~~I~~~c~glPLai~~~~~~l 317 (807)
..+++...+...+......-..+..+.|++.++|.|..|+.++..+
T Consensus 197 ~~~~l~~~l~~~g~~~~~~~~~~~~~~i~~~s~G~p~~i~~l~~~~ 242 (269)
T TIGR03015 197 TREYIEHRLERAGNRDAPVFSEGAFDAIHRFSRGIPRLINILCDRL 242 (269)
T ss_pred HHHHHHHHHHHcCCCCCCCcCHHHHHHHHHHcCCcccHHHHHHHHH
Confidence 9999988764333211122345788999999999999999988876
No 16
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.30 E-value=2.8e-14 Score=144.58 Aligned_cols=111 Identities=17% Similarity=0.164 Sum_probs=84.8
Q ss_pred CccccCcccccccccCCCccccchhhhccccCCCCCCcccEEEEccCCCCCCCccccc-CCCCccEEeeccCcccccccc
Q 047321 671 PSVIAFPKLKSLEIDGMKELEEWNYRITRKENISIMPRLSSLQIMNCRKLKALPDYLL-QTIALQKLSIYSCDLLEELPI 749 (807)
Q Consensus 671 ~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~lp~~l~-~l~~L~~L~l~~c~~l~~lP~ 749 (807)
+.++++.+|+.|++.. +++..+|. ++.+..|++|++..+ .++.+|..+. ++++|..|++.+ ++++++|
T Consensus 200 ~~lg~l~~L~~LyL~~-Nki~~lPe-------f~gcs~L~Elh~g~N-~i~~lpae~~~~L~~l~vLDLRd-Nklke~P- 268 (565)
T KOG0472|consen 200 PELGGLESLELLYLRR-NKIRFLPE-------FPGCSLLKELHVGEN-QIEMLPAEHLKHLNSLLVLDLRD-NKLKEVP- 268 (565)
T ss_pred hhhcchhhhHHHHhhh-cccccCCC-------CCccHHHHHHHhccc-HHHhhHHHHhcccccceeeeccc-cccccCc-
Confidence 3356777888888876 46666653 445677888888766 7777887654 788888888888 5788888
Q ss_pred cccccCCCCCCCCeeeeccCCCcccCCccCCCCCcccccccccchhhh
Q 047321 750 LEDRRTTDIPRLSSLAIWYCPKLKVLPDYLLRTTTLQAGEQDYENEKF 797 (807)
Q Consensus 750 ~~~~~~~~l~~L~~L~i~~c~~l~~lP~~l~~l~~L~~L~l~~~~~~~ 797 (807)
..++-+.+|+.|++++ +.+.++|-.++++ .|+.|-+.+||+..
T Consensus 269 ---de~clLrsL~rLDlSN-N~is~Lp~sLgnl-hL~~L~leGNPlrT 311 (565)
T KOG0472|consen 269 ---DEICLLRSLERLDLSN-NDISSLPYSLGNL-HLKFLALEGNPLRT 311 (565)
T ss_pred ---hHHHHhhhhhhhcccC-CccccCCcccccc-eeeehhhcCCchHH
Confidence 7778888888888886 6788888888888 78888888888754
No 17
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.25 E-value=8.8e-13 Score=139.78 Aligned_cols=269 Identities=20% Similarity=0.246 Sum_probs=136.7
Q ss_pred cceEEEEEeeccCCC-CccccCCCCceeEEEeCCCCCCCCCCCCccccc-cccCcccceeeecccc-CCccCeeEecCcc
Q 047321 467 DKVRHLGLKFEEGAS-FPMSIHGLNRLRTLLIYDQSPYNPSLSSSILPE-LFNKLACLRALVIRQS-LRTLEKFVVGGGV 543 (807)
Q Consensus 467 ~~~r~L~l~~~~~~~-~~~~~~~l~~Lr~L~l~~~~~~~l~~~i~~LP~-~i~~L~~L~~LdL~~~-L~~L~~l~~~~~~ 543 (807)
.++.+|.+++|.+.. ....|..+.+|-+|.|+.| .++.||. ++.+|++|+.|||..| ++-.+.+.
T Consensus 173 ~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrN-------rittLp~r~Fk~L~~L~~LdLnrN~irive~lt----- 240 (873)
T KOG4194|consen 173 VNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRN-------RITTLPQRSFKRLPKLESLDLNRNRIRIVEGLT----- 240 (873)
T ss_pred CCceEEeeccccccccccccccccchheeeecccC-------cccccCHHHhhhcchhhhhhccccceeeehhhh-----
Confidence 468899999998876 3467888889999999988 8999985 5667999999999722 11111100
Q ss_pred CCCccccccccccccccCcccccCCCCCCChhHHHHhhccCCCCCCeEEEEeeccCCCcchhhhhchhhHHHHHHhhcCC
Q 047321 544 DGSNTCRLESLKNLQLLRECGIEGLGNVSHLDEAERLQLYNQQNLLRLRLRFGRVVDGEDEERRRKNEKDKQLLEALQPP 623 (807)
Q Consensus 544 ~~~~~~~i~~L~~L~~L~~L~i~~l~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~l~p~ 623 (807)
...+..|++|+ |+.-+|+.+.+ ..+..|.+++.|+|..|.+.....+. -.....|+.|.-.
T Consensus 241 ----FqgL~Sl~nlk-lqrN~I~kL~D---------G~Fy~l~kme~l~L~~N~l~~vn~g~-----lfgLt~L~~L~lS 301 (873)
T KOG4194|consen 241 ----FQGLPSLQNLK-LQRNDISKLDD---------GAFYGLEKMEHLNLETNRLQAVNEGW-----LFGLTSLEQLDLS 301 (873)
T ss_pred ----hcCchhhhhhh-hhhcCcccccC---------cceeeecccceeecccchhhhhhccc-----ccccchhhhhccc
Confidence 11122222222 22233332221 12444555555555555431111000 0000000000000
Q ss_pred C---C--CCCCCCCcc-cceEeccCCcCceeeCcccCCCCCCCCCCCCCCCCCCccccCcccccccccCCCccccchhhh
Q 047321 624 L---S--HLPPLGKLP-LKKLELRDLESVKRVGNEFLGIEESSEDDPSSSSSSPSVIAFPKLKSLEIDGMKELEEWNYRI 697 (807)
Q Consensus 624 ~---~--~lp~l~~L~-L~~L~L~~~~~l~~i~~~~~~~~~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~ 697 (807)
. . .....+.-+ |+.|+|+. +.++.++.. ++..+..|++|.|+. +.+..+..
T Consensus 302 ~NaI~rih~d~WsftqkL~~LdLs~-N~i~~l~~~-------------------sf~~L~~Le~LnLs~-Nsi~~l~e-- 358 (873)
T KOG4194|consen 302 YNAIQRIHIDSWSFTQKLKELDLSS-NRITRLDEG-------------------SFRVLSQLEELNLSH-NSIDHLAE-- 358 (873)
T ss_pred hhhhheeecchhhhcccceeEeccc-cccccCChh-------------------HHHHHHHhhhhcccc-cchHHHHh--
Confidence 0 0 001122233 55555543 234433322 123455666666665 34444332
Q ss_pred ccccCCCCCCcccEEEEccCCCCC-CC---cccccCCCCccEEeeccCcccccccccccccCCCCCCCCeeeeccCCCcc
Q 047321 698 TRKENISIMPRLSSLQIMNCRKLK-AL---PDYLLQTIALQKLSIYSCDLLEELPILEDRRTTDIPRLSSLAIWYCPKLK 773 (807)
Q Consensus 698 ~~~~~~~~l~~L~~L~l~~c~~L~-~l---p~~l~~l~~L~~L~l~~c~~l~~lP~~~~~~~~~l~~L~~L~i~~c~~l~ 773 (807)
..+..+.+|+.|++.++ .+. .+ ...+..+++|+.|.+.+ ++++.+|. ..+..++.|++|++.++.-..
T Consensus 359 ---~af~~lssL~~LdLr~N-~ls~~IEDaa~~f~gl~~LrkL~l~g-Nqlk~I~k---rAfsgl~~LE~LdL~~NaiaS 430 (873)
T KOG4194|consen 359 ---GAFVGLSSLHKLDLRSN-ELSWCIEDAAVAFNGLPSLRKLRLTG-NQLKSIPK---RAFSGLEALEHLDLGDNAIAS 430 (873)
T ss_pred ---hHHHHhhhhhhhcCcCC-eEEEEEecchhhhccchhhhheeecC-ceeeecch---hhhccCcccceecCCCCccee
Confidence 22344667777777665 222 11 11234577777777777 46777762 456677777888777755444
Q ss_pred cCCccCCCCCccccccc------ccchhhhh
Q 047321 774 VLPDYLLRTTTLQAGEQ------DYENEKFS 798 (807)
Q Consensus 774 ~lP~~l~~l~~L~~L~l------~~~~~~~~ 798 (807)
-=|+.+..+ .|+.|-+ .+|+++|=
T Consensus 431 Iq~nAFe~m-~Lk~Lv~nSssflCDCql~Wl 460 (873)
T KOG4194|consen 431 IQPNAFEPM-ELKELVMNSSSFLCDCQLKWL 460 (873)
T ss_pred ecccccccc-hhhhhhhcccceEEeccHHHH
Confidence 445666666 5665554 24666643
No 18
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=99.24 E-value=2.9e-09 Score=116.53 Aligned_cols=301 Identities=13% Similarity=0.069 Sum_probs=170.8
Q ss_pred cCCccccccchHHHHHHHHhCCCCCCCCCceEEEEEccCCChHHHHHHHHHcCcccc-cc--c-ceEEEEEeCCCCCHHH
Q 047321 102 DEGGVCGRVDEKNELLSKLLCGSSEQQKGLDVISLVGLGGIGKTTLAQLAYNNDEVK-RN--F-EKVIWVCVSNTFEEIS 177 (807)
Q Consensus 102 ~~~~~vGR~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~-~~--f-~~~~wv~~~~~~~~~~ 177 (807)
.+..++||++++++|...+..... +.....+.|+|++|+|||++++.++++..-. .. . -..+|+++....+...
T Consensus 13 ~p~~l~gRe~e~~~l~~~l~~~~~--~~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in~~~~~~~~~ 90 (365)
T TIGR02928 13 VPDRIVHRDEQIEELAKALRPILR--GSRPSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVNCQILDTLYQ 90 (365)
T ss_pred CCCCCCCcHHHHHHHHHHHHHHHc--CCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEECCCCCCHHH
Confidence 345799999999999999864221 2345678999999999999999998742111 11 0 1356778777777788
Q ss_pred HHHHHHHHcC---CCCC-CCccHHHHHHHHHHHHh--CCceEEEEeCCCCCCccChHH-HHHhhcC----CC--CCcEEE
Q 047321 178 VAKAIIEGLG---VSAF-GLSEFESLMKQIQEYIT--GKKIFLVLDDVWDGDYKKWDP-FFSCLKN----GH--HESKIL 244 (807)
Q Consensus 178 ~~~~i~~~l~---~~~~-~~~~~~~~~~~l~~~l~--~k~~LlVlDdv~~~~~~~~~~-l~~~l~~----~~--~gs~Il 244 (807)
++..|++++. .... ...+..+....+.+.+. +++++||||+++.-. ...+. +...+.. .. ....+|
T Consensus 91 ~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlvIDE~d~L~-~~~~~~L~~l~~~~~~~~~~~~~v~lI 169 (365)
T TIGR02928 91 VLVELANQLRGSGEEVPTTGLSTSEVFRRLYKELNERGDSLIIVLDEIDYLV-GDDDDLLYQLSRARSNGDLDNAKVGVI 169 (365)
T ss_pred HHHHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEECchhhhc-cCCcHHHHhHhccccccCCCCCeEEEE
Confidence 8999998884 2211 12234455555666553 568899999996541 11122 2222211 11 223455
Q ss_pred EEcCCHHHHHHhC----C---CceEeCCCCChhhHHHHHHHHHhcc-CCccCccchHHHHHHHHHHcCCCHHHH-HHHHH
Q 047321 245 ITTHDRSVALQLG----S---IDIIPVKELGEGECWLLFKQIAFLR-RSFEDCEKLEPIGRKIASKCKGLPLAA-KVIGN 315 (807)
Q Consensus 245 iTTR~~~v~~~~~----~---~~~~~l~~L~~~~~~~Lf~~~a~~~-~~~~~~~~~~~~~~~I~~~c~glPLai-~~~~~ 315 (807)
.+|........+. . ...+.+++++.++..+++..++-.. ......++..+.+..++....|.|-.+ .++-.
T Consensus 170 ~i~n~~~~~~~l~~~~~s~~~~~~i~f~p~~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~R~al~~l~~ 249 (365)
T TIGR02928 170 GISNDLKFRENLDPRVKSSLCEEEIIFPPYDAEELRDILENRAEKAFYDGVLDDGVIPLCAALAAQEHGDARKAIDLLRV 249 (365)
T ss_pred EEECCcchHhhcCHHHhccCCcceeeeCCCCHHHHHHHHHHHHHhhccCCCCChhHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 5555443322221 1 2468899999999999999887311 111122333344556677777888544 33222
Q ss_pred Hh----hc-C--CCHHHHHHHHhccccccccCCCCchhhHHhcccCCCCccchhhhhhhhccC--CCcceechhHHHHHH
Q 047321 316 LL----RS-K--NTAKEWHIILDSEMWKVQEIGQGILAPLLLSYNDLPSNSMVKRCFSYCAVF--PKDYNMNKRELINLW 386 (807)
Q Consensus 316 ~l----~~-~--~~~~~w~~~~~~~~~~~~~~~~~i~~~l~lsy~~L~~~~~~k~cfl~~s~f--p~~~~i~~~~li~~W 386 (807)
.. .. . -+.+..+.+.+... .....-+...||. +.|..+..++.. .++..+....+...+
T Consensus 250 a~~~a~~~~~~~it~~~v~~a~~~~~----------~~~~~~~i~~l~~--~~~~~l~ai~~~~~~~~~~~~~~~~~~~y 317 (365)
T TIGR02928 250 AGEIAEREGAERVTEDHVEKAQEKIE----------KDRLLELIRGLPT--HSKLVLLAIANLAANDEDPFRTGEVYEVY 317 (365)
T ss_pred HHHHHHHcCCCCCCHHHHHHHHHHHH----------HHHHHHHHHcCCH--HHHHHHHHHHHHHhcCCCCccHHHHHHHH
Confidence 11 11 1 13444444433221 1223345678888 666555444321 133345556555532
Q ss_pred --HhcCC-CCCCCCchHHHHHHHHHHHHhhcCCcceec
Q 047321 387 --MTQGY-LNADEDEEMEMIGEEYFNILATRSFFQEFQ 421 (807)
Q Consensus 387 --~aeg~-i~~~~~~~~e~~~~~~~~~L~~rsll~~~~ 421 (807)
+++.+ +.+ ..+....++++.|...|+|....
T Consensus 318 ~~~~~~~~~~~----~~~~~~~~~l~~l~~~gli~~~~ 351 (365)
T TIGR02928 318 KEVCEDIGVDP----LTQRRISDLLNELDMLGLVEAEE 351 (365)
T ss_pred HHHHHhcCCCC----CcHHHHHHHHHHHHhcCCeEEEE
Confidence 12211 111 22355677899999999998754
No 19
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.24 E-value=5.6e-11 Score=137.13 Aligned_cols=235 Identities=21% Similarity=0.208 Sum_probs=143.4
Q ss_pred CcceEEEEEeeccCCCCccccCCCCceeEEEeCCCCCCCCCCCCccccccccCcccceeeeccc-cCC-------ccCee
Q 047321 466 GDKVRHLGLKFEEGASFPMSIHGLNRLRTLLIYDQSPYNPSLSSSILPELFNKLACLRALVIRQ-SLR-------TLEKF 537 (807)
Q Consensus 466 ~~~~r~L~l~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~l~~~i~~LP~~i~~L~~L~~LdL~~-~L~-------~L~~l 537 (807)
+..++.|++.+|.++.+|.. +++|++|++++| .+..+|.. ..+|++|+++. .+. .|..+
T Consensus 221 ~~~L~~L~L~~N~Lt~LP~l---p~~Lk~LdLs~N-------~LtsLP~l---p~sL~~L~Ls~N~L~~Lp~lp~~L~~L 287 (788)
T PRK15387 221 PAHITTLVIPDNNLTSLPAL---PPELRTLEVSGN-------QLTSLPVL---PPGLLELSIFSNPLTHLPALPSGLCKL 287 (788)
T ss_pred hcCCCEEEccCCcCCCCCCC---CCCCcEEEecCC-------ccCcccCc---ccccceeeccCCchhhhhhchhhcCEE
Confidence 45678888888888777753 578888888887 77778754 35677777762 222 23333
Q ss_pred EecCccCCCccccccccccccccCcccccCCCCCCChhHHHHhhccCCCCCCeEEEEeeccCCCcchhhhhchhhHHHHH
Q 047321 538 VVGGGVDGSNTCRLESLKNLQLLRECGIEGLGNVSHLDEAERLQLYNQQNLLRLRLRFGRVVDGEDEERRRKNEKDKQLL 617 (807)
Q Consensus 538 ~~~~~~~~~~~~~i~~L~~L~~L~~L~i~~l~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l 617 (807)
.+..+.+...+.. +.+|+.|.+++- .+..++. -..+|+.|+++.|.+
T Consensus 288 ~Ls~N~Lt~LP~~------p~~L~~LdLS~N-~L~~Lp~-------lp~~L~~L~Ls~N~L------------------- 334 (788)
T PRK15387 288 WIFGNQLTSLPVL------PPGLQELSVSDN-QLASLPA-------LPSELCKLWAYNNQL------------------- 334 (788)
T ss_pred ECcCCcccccccc------ccccceeECCCC-ccccCCC-------CcccccccccccCcc-------------------
Confidence 3333321111110 122333333220 0111000 012344445544442
Q ss_pred HhhcCCCCCCCCCCCcc--cceEeccCCcCceeeCcccCCCCCCCCCCCCCCCCCCccccCcccccccccCCCccccchh
Q 047321 618 EALQPPLSHLPPLGKLP--LKKLELRDLESVKRVGNEFLGIEESSEDDPSSSSSSPSVIAFPKLKSLEIDGMKELEEWNY 695 (807)
Q Consensus 618 ~~l~p~~~~lp~l~~L~--L~~L~L~~~~~l~~i~~~~~~~~~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~ 695 (807)
..+|. +| |+.|+|++ +.++.+|........|.+.++....+|. ..++|+.|+++++ .+..+|.
T Consensus 335 -------~~LP~---lp~~Lq~LdLS~-N~Ls~LP~lp~~L~~L~Ls~N~L~~LP~---l~~~L~~LdLs~N-~Lt~LP~ 399 (788)
T PRK15387 335 -------TSLPT---LPSGLQELSVSD-NQLASLPTLPSELYKLWAYNNRLTSLPA---LPSGLKELIVSGN-RLTSLPV 399 (788)
T ss_pred -------ccccc---cccccceEecCC-CccCCCCCCCcccceehhhccccccCcc---cccccceEEecCC-cccCCCC
Confidence 23443 34 89999987 4577776544445555555554444442 2457999999884 6776664
Q ss_pred hhccccCCCCCCcccEEEEccCCCCCCCcccccCCCCccEEeeccCcccccccccccccCCCCCCCCeeeeccCCCcccC
Q 047321 696 RITRKENISIMPRLSSLQIMNCRKLKALPDYLLQTIALQKLSIYSCDLLEELPILEDRRTTDIPRLSSLAIWYCPKLKVL 775 (807)
Q Consensus 696 ~~~~~~~~~~l~~L~~L~l~~c~~L~~lp~~l~~l~~L~~L~l~~c~~l~~lP~~~~~~~~~l~~L~~L~i~~c~~l~~l 775 (807)
.+++|+.|++++| .+..+|.. ..+|+.|++++ +.+..+| ..+..+++|+.|++++|+.-...
T Consensus 400 ---------l~s~L~~LdLS~N-~LssIP~l---~~~L~~L~Ls~-NqLt~LP----~sl~~L~~L~~LdLs~N~Ls~~~ 461 (788)
T PRK15387 400 ---------LPSELKELMVSGN-RLTSLPML---PSGLLSLSVYR-NQLTRLP----ESLIHLSSETTVNLEGNPLSERT 461 (788)
T ss_pred ---------cccCCCEEEccCC-cCCCCCcc---hhhhhhhhhcc-CcccccC----hHHhhccCCCeEECCCCCCCchH
Confidence 3478999999998 68889854 35788999998 4688999 77889999999999987765554
Q ss_pred CccC
Q 047321 776 PDYL 779 (807)
Q Consensus 776 P~~l 779 (807)
|..+
T Consensus 462 ~~~L 465 (788)
T PRK15387 462 LQAL 465 (788)
T ss_pred HHHH
Confidence 4443
No 20
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=99.18 E-value=1.2e-10 Score=118.87 Aligned_cols=195 Identities=22% Similarity=0.183 Sum_probs=102.1
Q ss_pred cccccchHHHHHHHHhCCCCCCCCCceEEEEEccCCChHHHHHHHHHcCcccccccceEEEEEeCCCCCHHHHHHHH---
Q 047321 106 VCGRVDEKNELLSKLLCGSSEQQKGLDVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSNTFEEISVAKAI--- 182 (807)
Q Consensus 106 ~vGR~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i--- 182 (807)
|+||++|+++|.+.+.. +..+.+.|+|+.|+|||+|++.+.+. .+..-...+|+........ ..+..+
T Consensus 1 F~gR~~el~~l~~~l~~------~~~~~~~l~G~rg~GKTsLl~~~~~~--~~~~~~~~~y~~~~~~~~~-~~~~~~~~~ 71 (234)
T PF01637_consen 1 FFGREKELEKLKELLES------GPSQHILLYGPRGSGKTSLLKEFINE--LKEKGYKVVYIDFLEESNE-SSLRSFIEE 71 (234)
T ss_dssp S-S-HHHHHHHHHCHHH--------SSEEEEEESTTSSHHHHHHHHHHH--CT--EECCCHHCCTTBSHH-HHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHh------hcCcEEEEEcCCcCCHHHHHHHHHHH--hhhcCCcEEEEecccchhh-hHHHHHHHH
Confidence 79999999999998873 24678999999999999999999873 3221113344444333322 222221
Q ss_pred -----------HHHcCCCCC------CCccHHHHHHHHHHHHh--CCceEEEEeCCCCCC------ccChHHHHHhhcC-
Q 047321 183 -----------IEGLGVSAF------GLSEFESLMKQIQEYIT--GKKIFLVLDDVWDGD------YKKWDPFFSCLKN- 236 (807)
Q Consensus 183 -----------~~~l~~~~~------~~~~~~~~~~~l~~~l~--~k~~LlVlDdv~~~~------~~~~~~l~~~l~~- 236 (807)
...+..... ...........+.+.+. +++.+||+||+..-. ..-...+...+..
T Consensus 72 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~iiviDe~~~~~~~~~~~~~~~~~l~~~~~~~ 151 (234)
T PF01637_consen 72 TSLADELSEALGISIPSITLEKISKDLSEDSFSALERLLEKLKKKGKKVIIVIDEFQYLAIASEEDKDFLKSLRSLLDSL 151 (234)
T ss_dssp HHHHCHCHHHHHHHCCTSTTEEEECTS-GG-G--HHHHHHHHHHCHCCEEEEEETGGGGGBCTTTTHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHhhhcccccchhhhhcchhhHHHHHHHHHHHHHhcCCcEEEEEecHHHHhhcccchHHHHHHHHHHHhhc
Confidence 111111110 11222233333333332 356999999984432 1111234444433
Q ss_pred -CCCCcEEEEEcCCHHHHHH--------hCCCceEeCCCCChhhHHHHHHHHHhccCCccCccchHHHHHHHHHHcCCCH
Q 047321 237 -GHHESKILITTHDRSVALQ--------LGSIDIIPVKELGEGECWLLFKQIAFLRRSFEDCEKLEPIGRKIASKCKGLP 307 (807)
Q Consensus 237 -~~~gs~IliTTR~~~v~~~--------~~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~~~~I~~~c~glP 307 (807)
......+|+++....+... .+....+.+++|+.+++++++...+-.. ... +.-.+..++|+..+||+|
T Consensus 152 ~~~~~~~~v~~~S~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~e~~~~~~~~~~~~--~~~-~~~~~~~~~i~~~~gG~P 228 (234)
T PF01637_consen 152 LSQQNVSIVITGSSDSLMEEFLDDKSPLFGRFSHIELKPLSKEEAREFLKELFKEL--IKL-PFSDEDIEEIYSLTGGNP 228 (234)
T ss_dssp ---TTEEEEEEESSHHHHHHTT-TTSTTTT---EEEE----HHHHHHHHHHHHHCC---------HHHHHHHHHHHTT-H
T ss_pred cccCCceEEEECCchHHHHHhhcccCccccccceEEEeeCCHHHHHHHHHHHHHHh--hcc-cCCHHHHHHHHHHhCCCH
Confidence 1233345555555555443 1223459999999999999999865332 111 123456699999999999
Q ss_pred HHHHH
Q 047321 308 LAAKV 312 (807)
Q Consensus 308 Lai~~ 312 (807)
..|..
T Consensus 229 ~~l~~ 233 (234)
T PF01637_consen 229 RYLQE 233 (234)
T ss_dssp HHHHH
T ss_pred HHHhc
Confidence 98764
No 21
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.18 E-value=4.9e-11 Score=138.49 Aligned_cols=102 Identities=22% Similarity=0.239 Sum_probs=76.1
Q ss_pred CcccccccccCCCccccchhhhccccCCCCCCcccEEEEccCCCCCCCcccccCCCCccEEeeccCcccccccccccccC
Q 047321 676 FPKLKSLEIDGMKELEEWNYRITRKENISIMPRLSSLQIMNCRKLKALPDYLLQTIALQKLSIYSCDLLEELPILEDRRT 755 (807)
Q Consensus 676 l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~lp~~l~~l~~L~~L~l~~c~~l~~lP~~~~~~~ 755 (807)
+++|+.|.+++| .+..+|. . ..++|+.|++++| ++..+|..+. ++|+.|+|++| .+..+| ..+
T Consensus 324 ~~sL~~L~Ls~N-~Lt~LP~------~--l~~sL~~L~Ls~N-~L~~LP~~lp--~~L~~LdLs~N-~Lt~LP----~~l 386 (754)
T PRK15370 324 PPGLKTLEAGEN-ALTSLPA------S--LPPELQVLDVSKN-QITVLPETLP--PTITTLDVSRN-ALTNLP----ENL 386 (754)
T ss_pred cccceeccccCC-ccccCCh------h--hcCcccEEECCCC-CCCcCChhhc--CCcCEEECCCC-cCCCCC----HhH
Confidence 478999999886 5666654 2 2378999999998 6888887664 68999999986 577888 332
Q ss_pred CCCCCCCeeeeccCCCcccCCccCC----CCCcccccccccchhhh
Q 047321 756 TDIPRLSSLAIWYCPKLKVLPDYLL----RTTTLQAGEQDYENEKF 797 (807)
Q Consensus 756 ~~l~~L~~L~i~~c~~l~~lP~~l~----~l~~L~~L~l~~~~~~~ 797 (807)
..+|+.|++++ +++..+|..+. .++.+..+++.+|++..
T Consensus 387 --~~sL~~LdLs~-N~L~~LP~sl~~~~~~~~~l~~L~L~~Npls~ 429 (754)
T PRK15370 387 --PAALQIMQASR-NNLVRLPESLPHFRGEGPQPTRIIVEYNPFSE 429 (754)
T ss_pred --HHHHHHHhhcc-CCcccCchhHHHHhhcCCCccEEEeeCCCccH
Confidence 24688889887 46778886553 34778899999998753
No 22
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=99.12 E-value=3.9e-10 Score=120.70 Aligned_cols=275 Identities=18% Similarity=0.128 Sum_probs=143.5
Q ss_pred CccccccchHHHHHHHHhCCCCCCCCCceEEEEEccCCChHHHHHHHHHcCcccccccceEEEEEeCCCCCHHHHHHHHH
Q 047321 104 GGVCGRVDEKNELLSKLLCGSSEQQKGLDVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSNTFEEISVAKAII 183 (807)
Q Consensus 104 ~~~vGR~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 183 (807)
.+|+|+++.++.+...+...... ......+.|+|++|+||||+|+.+++.. ...+ .++.. ........+..++
T Consensus 25 ~~~vG~~~~~~~l~~~l~~~~~~-~~~~~~~ll~GppG~GKT~la~~ia~~l--~~~~---~~~~~-~~~~~~~~l~~~l 97 (328)
T PRK00080 25 DEFIGQEKVKENLKIFIEAAKKR-GEALDHVLLYGPPGLGKTTLANIIANEM--GVNI---RITSG-PALEKPGDLAAIL 97 (328)
T ss_pred HHhcCcHHHHHHHHHHHHHHHhc-CCCCCcEEEECCCCccHHHHHHHHHHHh--CCCe---EEEec-ccccChHHHHHHH
Confidence 56999999999998877542111 2345678899999999999999999843 2221 11111 1111112222333
Q ss_pred HHcCCCCC-CCccHH----HHHHHHHHHHhCCceEEEEeCCCCCCccChHHHHHhhcCCCCCcEEEEEcCCHHHHHHhCC
Q 047321 184 EGLGVSAF-GLSEFE----SLMKQIQEYITGKKIFLVLDDVWDGDYKKWDPFFSCLKNGHHESKILITTHDRSVALQLGS 258 (807)
Q Consensus 184 ~~l~~~~~-~~~~~~----~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~IliTTR~~~v~~~~~~ 258 (807)
..+..... -.++.+ ...+.+...+.+.+..+|+|+..+.. .+ .. ...+.+-|..||+...+...+..
T Consensus 98 ~~l~~~~vl~IDEi~~l~~~~~e~l~~~~e~~~~~~~l~~~~~~~--~~---~~---~l~~~~li~at~~~~~l~~~L~s 169 (328)
T PRK00080 98 TNLEEGDVLFIDEIHRLSPVVEEILYPAMEDFRLDIMIGKGPAAR--SI---RL---DLPPFTLIGATTRAGLLTSPLRD 169 (328)
T ss_pred HhcccCCEEEEecHhhcchHHHHHHHHHHHhcceeeeeccCcccc--ce---ee---cCCCceEEeecCCcccCCHHHHH
Confidence 32221100 001111 11122233333344444444432210 00 00 01223456667775433322211
Q ss_pred --CceEeCCCCChhhHHHHHHHHHhccCCccCccchHHHHHHHHHHcCCCHHHHHHHHHHhhcCCCHHHHHHHHhccccc
Q 047321 259 --IDIIPVKELGEGECWLLFKQIAFLRRSFEDCEKLEPIGRKIASKCKGLPLAAKVIGNLLRSKNTAKEWHIILDSEMWK 336 (807)
Q Consensus 259 --~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~~~~I~~~c~glPLai~~~~~~l~~~~~~~~w~~~~~~~~~~ 336 (807)
...+++++++.++..+++.+.+...+. .--.+.+..|++.|+|.|-.+..+...+. .|....... .
T Consensus 170 Rf~~~~~l~~~~~~e~~~il~~~~~~~~~----~~~~~~~~~ia~~~~G~pR~a~~~l~~~~------~~a~~~~~~--~ 237 (328)
T PRK00080 170 RFGIVQRLEFYTVEELEKIVKRSARILGV----EIDEEGALEIARRSRGTPRIANRLLRRVR------DFAQVKGDG--V 237 (328)
T ss_pred hcCeeeecCCCCHHHHHHHHHHHHHHcCC----CcCHHHHHHHHHHcCCCchHHHHHHHHHH------HHHHHcCCC--C
Confidence 246899999999999999988754332 12245689999999999965555444321 121111000 0
Q ss_pred cc-cCCCCchhhHHhcccCCCCccchhhhhh-hhccCCCcceechhHHHHHHHhcCCCCCCCCchHHHHHHHHHH-HHhh
Q 047321 337 VQ-EIGQGILAPLLLSYNDLPSNSMVKRCFS-YCAVFPKDYNMNKRELINLWMTQGYLNADEDEEMEMIGEEYFN-ILAT 413 (807)
Q Consensus 337 ~~-~~~~~i~~~l~lsy~~L~~~~~~k~cfl-~~s~fp~~~~i~~~~li~~W~aeg~i~~~~~~~~e~~~~~~~~-~L~~ 413 (807)
.. .........+...|..|++ ..+..+. ....|+.+ .+..+.+.... | ...+.+++.++ .|++
T Consensus 238 I~~~~v~~~l~~~~~~~~~l~~--~~~~~l~~~~~~~~~~-~~~~~~~a~~l---g--------~~~~~~~~~~e~~Li~ 303 (328)
T PRK00080 238 ITKEIADKALDMLGVDELGLDE--MDRKYLRTIIEKFGGG-PVGLDTLAAAL---G--------EERDTIEDVYEPYLIQ 303 (328)
T ss_pred CCHHHHHHHHHHhCCCcCCCCH--HHHHHHHHHHHHcCCC-ceeHHHHHHHH---C--------CCcchHHHHhhHHHHH
Confidence 00 0001123345666777887 5666664 66677665 45555543332 1 11234455566 8999
Q ss_pred cCCcce
Q 047321 414 RSFFQE 419 (807)
Q Consensus 414 rsll~~ 419 (807)
.+|++.
T Consensus 304 ~~li~~ 309 (328)
T PRK00080 304 QGFIQR 309 (328)
T ss_pred cCCccc
Confidence 999974
No 23
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=99.09 E-value=1.4e-09 Score=115.67 Aligned_cols=268 Identities=18% Similarity=0.128 Sum_probs=142.8
Q ss_pred CccccccchHHHHHHHHhCCCCCCCCCceEEEEEccCCChHHHHHHHHHcCcccccccceEEEEEeCCCCCHHHHHHHHH
Q 047321 104 GGVCGRVDEKNELLSKLLCGSSEQQKGLDVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSNTFEEISVAKAII 183 (807)
Q Consensus 104 ~~~vGR~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 183 (807)
.+|||+++.+++|..++...... ......+.++|++|+|||+||+.+++.. ...+ ..+........ ..+...+
T Consensus 4 ~~~iG~~~~~~~l~~~l~~~~~~-~~~~~~~ll~Gp~G~GKT~la~~ia~~~--~~~~---~~~~~~~~~~~-~~l~~~l 76 (305)
T TIGR00635 4 AEFIGQEKVKEQLQLFIEAAKMR-QEALDHLLLYGPPGLGKTTLAHIIANEM--GVNL---KITSGPALEKP-GDLAAIL 76 (305)
T ss_pred HHHcCHHHHHHHHHHHHHHHHhc-CCCCCeEEEECCCCCCHHHHHHHHHHHh--CCCE---EEeccchhcCc-hhHHHHH
Confidence 46999999999998888643211 2245568899999999999999998742 2222 11111111111 1122222
Q ss_pred HHcCCCCC-CCccH----HHHHHHHHHHHhCCceEEEEeCCCCCCccChHHHHHhhcCCCCCcEEEEEcCCHHHHHHhCC
Q 047321 184 EGLGVSAF-GLSEF----ESLMKQIQEYITGKKIFLVLDDVWDGDYKKWDPFFSCLKNGHHESKILITTHDRSVALQLGS 258 (807)
Q Consensus 184 ~~l~~~~~-~~~~~----~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~IliTTR~~~v~~~~~~ 258 (807)
..++.... -.++. ......+...+.+.+..+|+|+..+. ..+. . ...+.+-|..||+...+...+..
T Consensus 77 ~~~~~~~vl~iDEi~~l~~~~~e~l~~~~~~~~~~~v~~~~~~~--~~~~---~---~~~~~~li~~t~~~~~l~~~l~s 148 (305)
T TIGR00635 77 TNLEEGDVLFIDEIHRLSPAVEELLYPAMEDFRLDIVIGKGPSA--RSVR---L---DLPPFTLVGATTRAGMLTSPLRD 148 (305)
T ss_pred HhcccCCEEEEehHhhhCHHHHHHhhHHHhhhheeeeeccCccc--ccee---e---cCCCeEEEEecCCccccCHHHHh
Confidence 22221100 00111 11122334444444445555544221 1111 0 11234556667776544332211
Q ss_pred --CceEeCCCCChhhHHHHHHHHHhccCCccCccchHHHHHHHHHHcCCCHHHHHHHHHHhhc------CC--CHHHHHH
Q 047321 259 --IDIIPVKELGEGECWLLFKQIAFLRRSFEDCEKLEPIGRKIASKCKGLPLAAKVIGNLLRS------KN--TAKEWHI 328 (807)
Q Consensus 259 --~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~~~~I~~~c~glPLai~~~~~~l~~------~~--~~~~w~~ 328 (807)
...+.+++++.++..+++.+.+...+. .--.+.+..|++.|+|.|-.+..++..+.. .. +.+..+.
T Consensus 149 R~~~~~~l~~l~~~e~~~il~~~~~~~~~----~~~~~al~~ia~~~~G~pR~~~~ll~~~~~~a~~~~~~~it~~~v~~ 224 (305)
T TIGR00635 149 RFGIILRLEFYTVEELAEIVSRSAGLLNV----EIEPEAALEIARRSRGTPRIANRLLRRVRDFAQVRGQKIINRDIALK 224 (305)
T ss_pred hcceEEEeCCCCHHHHHHHHHHHHHHhCC----CcCHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHcCCCCcCHHHHHH
Confidence 236789999999999999988753322 122456789999999999766555443210 00 1111111
Q ss_pred HHhccccccccCCCCchhhHHhcccCCCCccchhhhhh-hhccCCCcceechhHHHHHHHhcCCCCCCCCchHHHHHHHH
Q 047321 329 ILDSEMWKVQEIGQGILAPLLLSYNDLPSNSMVKRCFS-YCAVFPKDYNMNKRELINLWMTQGYLNADEDEEMEMIGEEY 407 (807)
Q Consensus 329 ~~~~~~~~~~~~~~~i~~~l~lsy~~L~~~~~~k~cfl-~~s~fp~~~~i~~~~li~~W~aeg~i~~~~~~~~e~~~~~~ 407 (807)
....+...|..++. +.+..+. ....++.+ .+..+.+.... | .....++..
T Consensus 225 ---------------~l~~l~~~~~~l~~--~~~~~L~al~~~~~~~-~~~~~~ia~~l---g--------~~~~~~~~~ 275 (305)
T TIGR00635 225 ---------------ALEMLMIDELGLDE--IDRKLLSVLIEQFQGG-PVGLKTLAAAL---G--------EDADTIEDV 275 (305)
T ss_pred ---------------HHHHhCCCCCCCCH--HHHHHHHHHHHHhCCC-cccHHHHHHHh---C--------CCcchHHHh
Confidence 22224566778887 6666555 55666543 34444433222 1 112345666
Q ss_pred HH-HHhhcCCcce
Q 047321 408 FN-ILATRSFFQE 419 (807)
Q Consensus 408 ~~-~L~~rsll~~ 419 (807)
++ .|++++||..
T Consensus 276 ~e~~Li~~~li~~ 288 (305)
T TIGR00635 276 YEPYLLQIGFLQR 288 (305)
T ss_pred hhHHHHHcCCccc
Confidence 78 6999999963
No 24
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=99.08 E-value=1.2e-08 Score=114.51 Aligned_cols=298 Identities=16% Similarity=0.178 Sum_probs=188.6
Q ss_pred CCccccccchHHHHHHHHhCCCCCCCCCceEEEEEccCCChHHHHHHHHHcCcccccccceEEEEEeCCC-CCHHHHHHH
Q 047321 103 EGGVCGRVDEKNELLSKLLCGSSEQQKGLDVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSNT-FEEISVAKA 181 (807)
Q Consensus 103 ~~~~vGR~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~-~~~~~~~~~ 181 (807)
....|-|.. +++.|.. ..+.+.+.|..|+|.|||||+-.... . ...=..+.|++++.. -++..+..-
T Consensus 18 ~~~~v~R~r----L~~~L~~-----~~~~RL~li~APAGfGKttl~aq~~~--~-~~~~~~v~Wlslde~dndp~rF~~y 85 (894)
T COG2909 18 PDNYVVRPR----LLDRLRR-----ANDYRLILISAPAGFGKTTLLAQWRE--L-AADGAAVAWLSLDESDNDPARFLSY 85 (894)
T ss_pred cccccccHH----HHHHHhc-----CCCceEEEEeCCCCCcHHHHHHHHHH--h-cCcccceeEeecCCccCCHHHHHHH
Confidence 344555554 5555543 34789999999999999999988864 1 112235889998765 467777888
Q ss_pred HHHHcCCCCCCC-------------ccHHHHHHHHHHHHh--CCceEEEEeCCCCCCccChHH-HHHhhcCCCCCcEEEE
Q 047321 182 IIEGLGVSAFGL-------------SEFESLMKQIQEYIT--GKKIFLVLDDVWDGDYKKWDP-FFSCLKNGHHESKILI 245 (807)
Q Consensus 182 i~~~l~~~~~~~-------------~~~~~~~~~l~~~l~--~k~~LlVlDdv~~~~~~~~~~-l~~~l~~~~~gs~Ili 245 (807)
++..++...++. .+...+.+.+..-+. .++..+||||..--....... +...+....++-..||
T Consensus 86 Li~al~~~~p~~~~~a~~l~q~~~~~~l~~l~~~L~~Ela~~~~pl~LVlDDyHli~~~~l~~~l~fLl~~~P~~l~lvv 165 (894)
T COG2909 86 LIAALQQATPTLGDEAQTLLQKHQYVSLESLLSSLLNELASYEGPLYLVLDDYHLISDPALHEALRFLLKHAPENLTLVV 165 (894)
T ss_pred HHHHHHHhCccccHHHHHHHHhcccccHHHHHHHHHHHHHhhcCceEEEeccccccCcccHHHHHHHHHHhCCCCeEEEE
Confidence 887776432221 233334444444333 468899999986543334444 5555666778889999
Q ss_pred EcCCHHHH---HHhCCCceEeC----CCCChhhHHHHHHHHHhccCCccCccchHHHHHHHHHHcCCCHHHHHHHHHHhh
Q 047321 246 TTHDRSVA---LQLGSIDIIPV----KELGEGECWLLFKQIAFLRRSFEDCEKLEPIGRKIASKCKGLPLAAKVIGNLLR 318 (807)
Q Consensus 246 TTR~~~v~---~~~~~~~~~~l----~~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~~~~I~~~c~glPLai~~~~~~l~ 318 (807)
|||.+.-. +.--.....++ -.++.+|+-++|..... .+-...-++.+.+..+|-+-|+..++=.++
T Consensus 166 ~SR~rP~l~la~lRlr~~llEi~~~~Lrf~~eE~~~fl~~~~~-------l~Ld~~~~~~L~~~teGW~~al~L~aLa~~ 238 (894)
T COG2909 166 TSRSRPQLGLARLRLRDELLEIGSEELRFDTEEAAAFLNDRGS-------LPLDAADLKALYDRTEGWAAALQLIALALR 238 (894)
T ss_pred EeccCCCCcccceeehhhHHhcChHhhcCChHHHHHHHHHcCC-------CCCChHHHHHHHhhcccHHHHHHHHHHHcc
Confidence 99986421 11111123333 36889999999987541 112234578999999999999999988888
Q ss_pred cCCCHHHHHHHHhccccccccCCCCchh-hHHhcccCCCCccchhhhhhhhccCCCcceechhHHHHHHHhcCCCCCCCC
Q 047321 319 SKNTAKEWHIILDSEMWKVQEIGQGILA-PLLLSYNDLPSNSMVKRCFSYCAVFPKDYNMNKRELINLWMTQGYLNADED 397 (807)
Q Consensus 319 ~~~~~~~w~~~~~~~~~~~~~~~~~i~~-~l~lsy~~L~~~~~~k~cfl~~s~fp~~~~i~~~~li~~W~aeg~i~~~~~ 397 (807)
...+.+.-...+.-. ...|.. ...--++.||+ ++|..++-||+++.= -..|+..-
T Consensus 239 ~~~~~~q~~~~LsG~-------~~~l~dYL~eeVld~Lp~--~l~~FLl~~svl~~f----~~eL~~~L----------- 294 (894)
T COG2909 239 NNTSAEQSLRGLSGA-------ASHLSDYLVEEVLDRLPP--ELRDFLLQTSVLSRF----NDELCNAL----------- 294 (894)
T ss_pred CCCcHHHHhhhccch-------HHHHHHHHHHHHHhcCCH--HHHHHHHHHHhHHHh----hHHHHHHH-----------
Confidence 444433333222210 000111 12234678999 899999999998541 12333221
Q ss_pred chHHHHHHHHHHHHhhcCCcceeccCCCCCccEEEEChhHHHHHHHhhcc
Q 047321 398 EEMEMIGEEYFNILATRSFFQEFQKNDDDDFTSCKMHDIVNDFAQFVSRK 447 (807)
Q Consensus 398 ~~~e~~~~~~~~~L~~rsll~~~~~~~~~~~~~~~mHdlv~~~a~~~~~~ 447 (807)
+-++-+...+++|.+++|+-..-.+. ...|+.|.++.||.+.-...
T Consensus 295 -tg~~ng~amLe~L~~~gLFl~~Ldd~---~~WfryH~LFaeFL~~r~~~ 340 (894)
T COG2909 295 -TGEENGQAMLEELERRGLFLQRLDDE---GQWFRYHHLFAEFLRQRLQR 340 (894)
T ss_pred -hcCCcHHHHHHHHHhCCCceeeecCC---CceeehhHHHHHHHHhhhcc
Confidence 11244677899999999986433222 24699999999999877654
No 25
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.05 E-value=5e-12 Score=113.87 Aligned_cols=144 Identities=27% Similarity=0.380 Sum_probs=115.2
Q ss_pred hccCCCCCCeEEEEeeccCCCcchhhhhchhhHHHHHHhhcCCCCCCCC-CCCcc-cceEeccCCcCceeeCcccCCCCC
Q 047321 581 QLYNQQNLLRLRLRFGRVVDGEDEERRRKNEKDKQLLEALQPPLSHLPP-LGKLP-LKKLELRDLESVKRVGNEFLGIEE 658 (807)
Q Consensus 581 ~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~l~p~~~~lp~-l~~L~-L~~L~L~~~~~l~~i~~~~~~~~~ 658 (807)
.+.++.+|+.|.++.|.+ +.+|. ++.|| |+.|++. ++.+...|..
T Consensus 51 nia~l~nlevln~~nnqi--------------------------e~lp~~issl~klr~lnvg-mnrl~~lprg------ 97 (264)
T KOG0617|consen 51 NIAELKNLEVLNLSNNQI--------------------------EELPTSISSLPKLRILNVG-MNRLNILPRG------ 97 (264)
T ss_pred cHHHhhhhhhhhcccchh--------------------------hhcChhhhhchhhhheecc-hhhhhcCccc------
Confidence 567788999999988874 45664 88899 9999984 6666666654
Q ss_pred CCCCCCCCCCCCCccccCcccccccccCCCccccchhhhccccCCCCCCcccEEEEccCCCCCCCcccccCCCCccEEee
Q 047321 659 SSEDDPSSSSSSPSVIAFPKLKSLEIDGMKELEEWNYRITRKENISIMPRLSSLQIMNCRKLKALPDYLLQTIALQKLSI 738 (807)
Q Consensus 659 l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~lp~~l~~l~~L~~L~l 738 (807)
.+.||.|+.|++.+ +++.+-.. +..+..|..|+.|+++++ ..+-+|..++.+++|+.|.+
T Consensus 98 --------------fgs~p~levldlty-nnl~e~~l----pgnff~m~tlralyl~dn-dfe~lp~dvg~lt~lqil~l 157 (264)
T KOG0617|consen 98 --------------FGSFPALEVLDLTY-NNLNENSL----PGNFFYMTTLRALYLGDN-DFEILPPDVGKLTNLQILSL 157 (264)
T ss_pred --------------cCCCchhhhhhccc-cccccccC----CcchhHHHHHHHHHhcCC-CcccCChhhhhhcceeEEee
Confidence 45899999999988 45544322 335666788999999988 78899999999999999999
Q ss_pred ccCcccccccccccccCCCCCCCCeeeeccCCCcccCCccCCCCC
Q 047321 739 YSCDLLEELPILEDRRTTDIPRLSSLAIWYCPKLKVLPDYLLRTT 783 (807)
Q Consensus 739 ~~c~~l~~lP~~~~~~~~~l~~L~~L~i~~c~~l~~lP~~l~~l~ 783 (807)
.+ +.+-++| ..++.+..|+.|.|.+ +.++.+|..++++.
T Consensus 158 rd-ndll~lp----keig~lt~lrelhiqg-nrl~vlppel~~l~ 196 (264)
T KOG0617|consen 158 RD-NDLLSLP----KEIGDLTRLRELHIQG-NRLTVLPPELANLD 196 (264)
T ss_pred cc-CchhhCc----HHHHHHHHHHHHhccc-ceeeecChhhhhhh
Confidence 99 5788899 8889999999999997 67899997777664
No 26
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.01 E-value=7e-12 Score=112.93 Aligned_cols=155 Identities=23% Similarity=0.365 Sum_probs=125.1
Q ss_pred ccCCCCCCeEEEEeeccCCCcchhhhhchhhHHHHHHhhcCCCCCCC-CCCCcc-cceEeccCCcCceeeCcccCCCCCC
Q 047321 582 LYNQQNLLRLRLRFGRVVDGEDEERRRKNEKDKQLLEALQPPLSHLP-PLGKLP-LKKLELRDLESVKRVGNEFLGIEES 659 (807)
Q Consensus 582 l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~l~p~~~~lp-~l~~L~-L~~L~L~~~~~l~~i~~~~~~~~~l 659 (807)
+.++.+...|.|+.|.+ ..+| .+..|- |+.|++++ +.++.+|..
T Consensus 29 Lf~~s~ITrLtLSHNKl--------------------------~~vppnia~l~nlevln~~n-nqie~lp~~------- 74 (264)
T KOG0617|consen 29 LFNMSNITRLTLSHNKL--------------------------TVVPPNIAELKNLEVLNLSN-NQIEELPTS------- 74 (264)
T ss_pred ccchhhhhhhhcccCce--------------------------eecCCcHHHhhhhhhhhccc-chhhhcChh-------
Confidence 44556677777877764 2333 367777 88888876 556666643
Q ss_pred CCCCCCCCCCCCccccCcccccccccCCCccccchhhhccccCCCCCCcccEEEEccCCCC--CCCcccccCCCCccEEe
Q 047321 660 SEDDPSSSSSSPSVIAFPKLKSLEIDGMKELEEWNYRITRKENISIMPRLSSLQIMNCRKL--KALPDYLLQTIALQKLS 737 (807)
Q Consensus 660 ~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~L--~~lp~~l~~l~~L~~L~ 737 (807)
+..+|+|+.|++. |+.+..+|. +++.||-|+.|++..+ +| .++|..+-.++.|+.|.
T Consensus 75 -------------issl~klr~lnvg-mnrl~~lpr------gfgs~p~levldltyn-nl~e~~lpgnff~m~tlraly 133 (264)
T KOG0617|consen 75 -------------ISSLPKLRILNVG-MNRLNILPR------GFGSFPALEVLDLTYN-NLNENSLPGNFFYMTTLRALY 133 (264)
T ss_pred -------------hhhchhhhheecc-hhhhhcCcc------ccCCCchhhhhhcccc-ccccccCCcchhHHHHHHHHH
Confidence 5689999999995 678877776 8889999999999976 45 47898888889999999
Q ss_pred eccCcccccccccccccCCCCCCCCeeeeccCCCcccCCccCCCCCcccccccccchhhh
Q 047321 738 IYSCDLLEELPILEDRRTTDIPRLSSLAIWYCPKLKVLPDYLLRTTTLQAGEQDYENEKF 797 (807)
Q Consensus 738 l~~c~~l~~lP~~~~~~~~~l~~L~~L~i~~c~~l~~lP~~l~~l~~L~~L~l~~~~~~~ 797 (807)
+++ +..+-+| ..++.+++|+.|.+.+ +.+-++|..++.++.|+.|.+.+|.+..
T Consensus 134 l~d-ndfe~lp----~dvg~lt~lqil~lrd-ndll~lpkeig~lt~lrelhiqgnrl~v 187 (264)
T KOG0617|consen 134 LGD-NDFEILP----PDVGKLTNLQILSLRD-NDLLSLPKEIGDLTRLRELHIQGNRLTV 187 (264)
T ss_pred hcC-CCcccCC----hhhhhhcceeEEeecc-CchhhCcHHHHHHHHHHHHhcccceeee
Confidence 998 5788899 8889999999999998 5678899999999999999999998864
No 27
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.00 E-value=2.7e-11 Score=135.57 Aligned_cols=107 Identities=24% Similarity=0.270 Sum_probs=65.4
Q ss_pred cCcccccccccCCCccccchhhhccccCCCCCCcccEEEEccCCCCCCCcccccCCCCccEEeeccCccccccccccccc
Q 047321 675 AFPKLKSLEIDGMKELEEWNYRITRKENISIMPRLSSLQIMNCRKLKALPDYLLQTIALQKLSIYSCDLLEELPILEDRR 754 (807)
Q Consensus 675 ~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~lp~~l~~l~~L~~L~l~~c~~l~~lP~~~~~~ 754 (807)
.-++|+.|..+.|+-.+.... ..-.+|++++|+.. ++..+|.++..+.+|+.|++.+ +.+..+| ..
T Consensus 217 ~g~~l~~L~a~~n~l~~~~~~--------p~p~nl~~~dis~n-~l~~lp~wi~~~~nle~l~~n~-N~l~~lp----~r 282 (1081)
T KOG0618|consen 217 SGPSLTALYADHNPLTTLDVH--------PVPLNLQYLDISHN-NLSNLPEWIGACANLEALNANH-NRLVALP----LR 282 (1081)
T ss_pred cCcchheeeeccCcceeeccc--------cccccceeeecchh-hhhcchHHHHhcccceEecccc-hhHHhhH----HH
Confidence 345666666666543321111 12346777777766 6677777777777777777766 4566666 55
Q ss_pred CCCCCCCCeeeeccCCCcccCCccCCCCCcccccccccchhh
Q 047321 755 TTDIPRLSSLAIWYCPKLKVLPDYLLRTTTLQAGEQDYENEK 796 (807)
Q Consensus 755 ~~~l~~L~~L~i~~c~~l~~lP~~l~~l~~L~~L~l~~~~~~ 796 (807)
+....+|+.|.+.. +.++.+|..++.+++|+.|++..|++.
T Consensus 283 i~~~~~L~~l~~~~-nel~yip~~le~~~sL~tLdL~~N~L~ 323 (1081)
T KOG0618|consen 283 ISRITSLVSLSAAY-NELEYIPPFLEGLKSLRTLDLQSNNLP 323 (1081)
T ss_pred HhhhhhHHHHHhhh-hhhhhCCCcccccceeeeeeehhcccc
Confidence 55666666666665 346666666666667777777666553
No 28
>PF05729 NACHT: NACHT domain
Probab=98.98 E-value=4.2e-09 Score=101.07 Aligned_cols=143 Identities=19% Similarity=0.256 Sum_probs=88.6
Q ss_pred eEEEEEccCCChHHHHHHHHHcCcccccc----cceEEEEEeCCCCCHH---HHHHHHHHHcCCCCCCCccHHHHHHHHH
Q 047321 132 DVISLVGLGGIGKTTLAQLAYNNDEVKRN----FEKVIWVCVSNTFEEI---SVAKAIIEGLGVSAFGLSEFESLMKQIQ 204 (807)
Q Consensus 132 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~----f~~~~wv~~~~~~~~~---~~~~~i~~~l~~~~~~~~~~~~~~~~l~ 204 (807)
+++.|+|.+|+||||+++.++........ +...+|+......... .+...|........ ..... .+.
T Consensus 1 r~l~I~G~~G~GKStll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~---~~~~~---~~~ 74 (166)
T PF05729_consen 1 RVLWISGEPGSGKSTLLRKLAQQLAEEEPPPSKFPYPFFFSLRDISDSNNSRSLADLLFDQLPESI---APIEE---LLQ 74 (166)
T ss_pred CEEEEECCCCCChHHHHHHHHHHHHhcCcccccceEEEEEeehhhhhccccchHHHHHHHhhccch---hhhHH---HHH
Confidence 58999999999999999998874332222 4456677665544332 33333333332221 11111 222
Q ss_pred HH-HhCCceEEEEeCCCCCCc--c-----ChHHHH-HhhcC-CCCCcEEEEEcCCHHH---HHHhCCCceEeCCCCChhh
Q 047321 205 EY-ITGKKIFLVLDDVWDGDY--K-----KWDPFF-SCLKN-GHHESKILITTHDRSV---ALQLGSIDIIPVKELGEGE 271 (807)
Q Consensus 205 ~~-l~~k~~LlVlDdv~~~~~--~-----~~~~l~-~~l~~-~~~gs~IliTTR~~~v---~~~~~~~~~~~l~~L~~~~ 271 (807)
.. -..++++||+|+++.-.. . .+..+. ..+.. ..++.+|+||+|.... .........+++.+|++++
T Consensus 75 ~~~~~~~~~llilDglDE~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~liit~r~~~~~~~~~~~~~~~~~~l~~~~~~~ 154 (166)
T PF05729_consen 75 ELLEKNKRVLLILDGLDELEEQDQSQERQRLLDLLSQLLPQALPPGVKLIITSRPRAFPDLRRRLKQAQILELEPFSEED 154 (166)
T ss_pred HHHHcCCceEEEEechHhcccchhhhHHHHHHHHHHHHhhhccCCCCeEEEEEcCChHHHHHHhcCCCcEEEECCCCHHH
Confidence 22 257899999999854321 1 133333 33333 3578999999999766 3334455689999999999
Q ss_pred HHHHHHHHH
Q 047321 272 CWLLFKQIA 280 (807)
Q Consensus 272 ~~~Lf~~~a 280 (807)
..+++.+..
T Consensus 155 ~~~~~~~~f 163 (166)
T PF05729_consen 155 IKQYLRKYF 163 (166)
T ss_pred HHHHHHHHh
Confidence 999997653
No 29
>PRK06893 DNA replication initiation factor; Validated
Probab=98.87 E-value=7.1e-08 Score=97.39 Aligned_cols=155 Identities=15% Similarity=0.181 Sum_probs=98.2
Q ss_pred CceEEEEEccCCChHHHHHHHHHcCcccccccceEEEEEeCCCCCHHHHHHHHHHHcCCCCCCCccHHHHHHHHHHHHhC
Q 047321 130 GLDVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSNTFEEISVAKAIIEGLGVSAFGLSEFESLMKQIQEYITG 209 (807)
Q Consensus 130 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~ 209 (807)
..+.+.|+|++|+|||+||+.+++. .......+.|+.+.... .... .+.+.+.
T Consensus 38 ~~~~l~l~G~~G~GKThL~~ai~~~--~~~~~~~~~y~~~~~~~---~~~~---------------------~~~~~~~- 90 (229)
T PRK06893 38 QQPFFYIWGGKSSGKSHLLKAVSNH--YLLNQRTAIYIPLSKSQ---YFSP---------------------AVLENLE- 90 (229)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHH--HHHcCCCeEEeeHHHhh---hhhH---------------------HHHhhcc-
Confidence 3467899999999999999999984 32223345666553110 0000 1111112
Q ss_pred CceEEEEeCCCCCC-ccChHH-HHHhhcCC-CCCcEEEEEcCC----------HHHHHHhCCCceEeCCCCChhhHHHHH
Q 047321 210 KKIFLVLDDVWDGD-YKKWDP-FFSCLKNG-HHESKILITTHD----------RSVALQLGSIDIIPVKELGEGECWLLF 276 (807)
Q Consensus 210 k~~LlVlDdv~~~~-~~~~~~-l~~~l~~~-~~gs~IliTTR~----------~~v~~~~~~~~~~~l~~L~~~~~~~Lf 276 (807)
+.-+||+||+|... ...|+. +...+... ..|..+||+|.+ +++...+.....++++++++++.++++
T Consensus 91 ~~dlLilDDi~~~~~~~~~~~~l~~l~n~~~~~~~~illits~~~p~~l~~~~~~L~sRl~~g~~~~l~~pd~e~~~~iL 170 (229)
T PRK06893 91 QQDLVCLDDLQAVIGNEEWELAIFDLFNRIKEQGKTLLLISADCSPHALSIKLPDLASRLTWGEIYQLNDLTDEQKIIVL 170 (229)
T ss_pred cCCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCcEEEEeCCCChHHccccchhHHHHHhcCCeeeCCCCCHHHHHHHH
Confidence 34599999998642 345664 44444433 245556554443 356666666678999999999999999
Q ss_pred HHHHhccCCccCccchHHHHHHHHHHcCCCHHHHHHHHH
Q 047321 277 KQIAFLRRSFEDCEKLEPIGRKIASKCKGLPLAAKVIGN 315 (807)
Q Consensus 277 ~~~a~~~~~~~~~~~~~~~~~~I~~~c~glPLai~~~~~ 315 (807)
.+.++..+- .--.++..-|++.+.|..-++..+-.
T Consensus 171 ~~~a~~~~l----~l~~~v~~~L~~~~~~d~r~l~~~l~ 205 (229)
T PRK06893 171 QRNAYQRGI----ELSDEVANFLLKRLDRDMHTLFDALD 205 (229)
T ss_pred HHHHHHcCC----CCCHHHHHHHHHhccCCHHHHHHHHH
Confidence 999875432 12256778999999987766654433
No 30
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.86 E-value=1.4e-09 Score=128.59 Aligned_cols=126 Identities=23% Similarity=0.150 Sum_probs=92.0
Q ss_pred CcceEEEEEeec-cCCCCccccCCCCceeEEEeCCCCCCCCCCCCccccccccCcccceeeecc------------ccCC
Q 047321 466 GDKVRHLGLKFE-EGASFPMSIHGLNRLRTLLIYDQSPYNPSLSSSILPELFNKLACLRALVIR------------QSLR 532 (807)
Q Consensus 466 ~~~~r~L~l~~~-~~~~~~~~~~~l~~Lr~L~l~~~~~~~l~~~i~~LP~~i~~L~~L~~LdL~------------~~L~ 532 (807)
.+.+|.|++++| ....+|.+++++-+||+|+++++ .+..||.++++|+.|.|||+. ..|+
T Consensus 570 m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t-------~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~ 642 (889)
T KOG4658|consen 570 LPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDT-------GISHLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQ 642 (889)
T ss_pred CcceEEEECCCCCccCcCChHHhhhhhhhcccccCC-------CccccchHHHHHHhhheeccccccccccccchhhhcc
Confidence 578999999965 44569999999999999999998 899999999999999999998 3377
Q ss_pred ccCeeEecCccCCCccccccccccccccCcccccCCCC-----CC----------------ChhHHHHhhccCCCCCCeE
Q 047321 533 TLEKFVVGGGVDGSNTCRLESLKNLQLLRECGIEGLGN-----VS----------------HLDEAERLQLYNQQNLLRL 591 (807)
Q Consensus 533 ~L~~l~~~~~~~~~~~~~i~~L~~L~~L~~L~i~~l~~-----~~----------------~~~~~~~~~l~~l~~L~~L 591 (807)
+|+.+.+...........+.+|.+|.+|+.+.+..... .. .......+.+..+.+|+.|
T Consensus 643 ~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~~s~~~~e~l~~~~~L~~~~~~l~~~~~~~~~~~~~~~~l~~L~~L 722 (889)
T KOG4658|consen 643 SLRVLRLPRSALSNDKLLLKELENLEHLENLSITISSVLLLEDLLGMTRLRSLLQSLSIEGCSKRTLISSLGSLGNLEEL 722 (889)
T ss_pred cccEEEeeccccccchhhHHhhhcccchhhheeecchhHhHhhhhhhHHHHHHhHhhhhcccccceeecccccccCcceE
Confidence 88887776554334455677777777777766543221 00 0001122345667888888
Q ss_pred EEEeecc
Q 047321 592 RLRFGRV 598 (807)
Q Consensus 592 ~L~~~~~ 598 (807)
.+..+..
T Consensus 723 ~i~~~~~ 729 (889)
T KOG4658|consen 723 SILDCGI 729 (889)
T ss_pred EEEcCCC
Confidence 8887763
No 31
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=98.84 E-value=3.8e-09 Score=122.91 Aligned_cols=226 Identities=19% Similarity=0.291 Sum_probs=130.0
Q ss_pred CcceEEEEEeeccCCCCccccCCCCceeEEEeCCCCCCCCCCCCccccccccCcccceeeecc-ccCCccCeeEecCccC
Q 047321 466 GDKVRHLGLKFEEGASFPMSIHGLNRLRTLLIYDQSPYNPSLSSSILPELFNKLACLRALVIR-QSLRTLEKFVVGGGVD 544 (807)
Q Consensus 466 ~~~~r~L~l~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~l~~~i~~LP~~i~~L~~L~~LdL~-~~L~~L~~l~~~~~~~ 544 (807)
+..++.|++++|.+..+|..+. .+|++|++++| .+..+|..+. .+|+.|+|+ +++..++.
T Consensus 198 p~~L~~L~Ls~N~LtsLP~~l~--~nL~~L~Ls~N-------~LtsLP~~l~--~~L~~L~Ls~N~L~~LP~-------- 258 (754)
T PRK15370 198 PEQITTLILDNNELKSLPENLQ--GNIKTLYANSN-------QLTSIPATLP--DTIQEMELSINRITELPE-------- 258 (754)
T ss_pred ccCCcEEEecCCCCCcCChhhc--cCCCEEECCCC-------ccccCChhhh--ccccEEECcCCccCcCCh--------
Confidence 5678889999888888877664 58899999887 7778887664 368888887 22222221
Q ss_pred CCccccccccccccccCcccccCCCCCCChhHHHHhhccCCCCCCeEEEEeeccCCCcchhhhhchhhHHHHHHhhcCCC
Q 047321 545 GSNTCRLESLKNLQLLRECGIEGLGNVSHLDEAERLQLYNQQNLLRLRLRFGRVVDGEDEERRRKNEKDKQLLEALQPPL 624 (807)
Q Consensus 545 ~~~~~~i~~L~~L~~L~~L~i~~l~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~l~p~~ 624 (807)
. +. .+|+.|.+++ .++..++. .+. .+|+.|+++.|.+.
T Consensus 259 -----~---l~--s~L~~L~Ls~-N~L~~LP~----~l~--~sL~~L~Ls~N~Lt------------------------- 296 (754)
T PRK15370 259 -----R---LP--SALQSLDLFH-NKISCLPE----NLP--EELRYLSVYDNSIR------------------------- 296 (754)
T ss_pred -----h---Hh--CCCCEEECcC-CccCcccc----ccC--CCCcEEECCCCccc-------------------------
Confidence 1 11 1344444432 11111111 121 36778888777642
Q ss_pred CCCCCCCCc-c-cceEeccCCcCceeeCccc-CCCCCCCCCCCCCCCCCCccccCcccccccccCCCccccchhhhcccc
Q 047321 625 SHLPPLGKL-P-LKKLELRDLESVKRVGNEF-LGIEESSEDDPSSSSSSPSVIAFPKLKSLEIDGMKELEEWNYRITRKE 701 (807)
Q Consensus 625 ~~lp~l~~L-~-L~~L~L~~~~~l~~i~~~~-~~~~~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~ 701 (807)
.+|. .+ + |+.|+++++ .++.+|..+ ..+..|.+.++....+|.. -.++|+.|+++++ ++..+|.
T Consensus 297 -~LP~--~lp~sL~~L~Ls~N-~Lt~LP~~l~~sL~~L~Ls~N~Lt~LP~~--l~~sL~~L~Ls~N-~L~~LP~------ 363 (754)
T PRK15370 297 -TLPA--HLPSGITHLNVQSN-SLTALPETLPPGLKTLEAGENALTSLPAS--LPPELQVLDVSKN-QITVLPE------ 363 (754)
T ss_pred -cCcc--cchhhHHHHHhcCC-ccccCCccccccceeccccCCccccCChh--hcCcccEEECCCC-CCCcCCh------
Confidence 1221 01 1 444444432 233333211 1222233333332233322 2368999999986 5666654
Q ss_pred CCCCCCcccEEEEccCCCCCCCcccccCCCCccEEeeccCcccccccccccccCCCCCCCCeeeeccCCC
Q 047321 702 NISIMPRLSSLQIMNCRKLKALPDYLLQTIALQKLSIYSCDLLEELPILEDRRTTDIPRLSSLAIWYCPK 771 (807)
Q Consensus 702 ~~~~l~~L~~L~l~~c~~L~~lp~~l~~l~~L~~L~l~~c~~l~~lP~~~~~~~~~l~~L~~L~i~~c~~ 771 (807)
. ..++|+.|+|++| ++..+|..+. .+|+.|++++| .+..+|..-......++++..|.+.+++.
T Consensus 364 ~--lp~~L~~LdLs~N-~Lt~LP~~l~--~sL~~LdLs~N-~L~~LP~sl~~~~~~~~~l~~L~L~~Npl 427 (754)
T PRK15370 364 T--LPPTITTLDVSRN-ALTNLPENLP--AALQIMQASRN-NLVRLPESLPHFRGEGPQPTRIIVEYNPF 427 (754)
T ss_pred h--hcCCcCEEECCCC-cCCCCCHhHH--HHHHHHhhccC-CcccCchhHHHHhhcCCCccEEEeeCCCc
Confidence 2 2468999999998 7888998764 47999999985 67787710001223457788888887653
No 32
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=98.82 E-value=6e-07 Score=101.87 Aligned_cols=215 Identities=13% Similarity=0.078 Sum_probs=126.2
Q ss_pred cCCccccccchHHHHHHHHhCCCCCCCCCceEEEEEccCCChHHHHHHHHHcCccc---ccccc--eEEEEEeCCCCCHH
Q 047321 102 DEGGVCGRVDEKNELLSKLLCGSSEQQKGLDVISLVGLGGIGKTTLAQLAYNNDEV---KRNFE--KVIWVCVSNTFEEI 176 (807)
Q Consensus 102 ~~~~~vGR~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~---~~~f~--~~~wv~~~~~~~~~ 176 (807)
.+..+.||++|+++|...|...-.+ .....++.|+|++|+|||+.++.|.....- ....+ .+++|++....+..
T Consensus 753 VPD~LPhREeEIeeLasfL~paIkg-sgpnnvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYINCm~Lstp~ 831 (1164)
T PTZ00112 753 VPKYLPCREKEIKEVHGFLESGIKQ-SGSNQILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEINGMNVVHPN 831 (1164)
T ss_pred CCCcCCChHHHHHHHHHHHHHHHhc-CCCCceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEeCCccCCHH
Confidence 3467999999999999988654321 223467889999999999999999863211 11112 35677777777788
Q ss_pred HHHHHHHHHcCCCCC-CCccHHHHHHHHHHHH-h--CCceEEEEeCCCCCCccChHHHHHhhcC-CCCCcEEEE--EcCC
Q 047321 177 SVAKAIIEGLGVSAF-GLSEFESLMKQIQEYI-T--GKKIFLVLDDVWDGDYKKWDPFFSCLKN-GHHESKILI--TTHD 249 (807)
Q Consensus 177 ~~~~~i~~~l~~~~~-~~~~~~~~~~~l~~~l-~--~k~~LlVlDdv~~~~~~~~~~l~~~l~~-~~~gs~Ili--TTR~ 249 (807)
.++..|.+++..... ...........+...+ . +...+|||||++.-....-+.+...+.+ ...+++|+| +|.+
T Consensus 832 sIYqvI~qqL~g~~P~~GlsS~evLerLF~~L~k~~r~v~IIILDEID~L~kK~QDVLYnLFR~~~~s~SKLiLIGISNd 911 (1164)
T PTZ00112 832 AAYQVLYKQLFNKKPPNALNSFKILDRLFNQNKKDNRNVSILIIDEIDYLITKTQKVLFTLFDWPTKINSKLVLIAISNT 911 (1164)
T ss_pred HHHHHHHHHHcCCCCCccccHHHHHHHHHhhhhcccccceEEEeehHhhhCccHHHHHHHHHHHhhccCCeEEEEEecCc
Confidence 888889888854332 1222233444444443 2 2345899999954321111223333332 224555544 3433
Q ss_pred HHH--------HHHhCCCceEeCCCCChhhHHHHHHHHHhccCCccCccchHHHHHHHHHHcCCCHHHHHHHHHHhh
Q 047321 250 RSV--------ALQLGSIDIIPVKELGEGECWLLFKQIAFLRRSFEDCEKLEPIGRKIASKCKGLPLAAKVIGNLLR 318 (807)
Q Consensus 250 ~~v--------~~~~~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~~~~I~~~c~glPLai~~~~~~l~ 318 (807)
.+. ...++ ...+...+++.++-.+++..++-.....-.+..++-+|+.++...|-.=.||.++-.+..
T Consensus 912 lDLperLdPRLRSRLg-~eeIvF~PYTaEQL~dILk~RAe~A~gVLdDdAIELIArkVAq~SGDARKALDILRrAgE 987 (1164)
T PTZ00112 912 MDLPERLIPRCRSRLA-FGRLVFSPYKGDEIEKIIKERLENCKEIIDHTAIQLCARKVANVSGDIRKALQICRKAFE 987 (1164)
T ss_pred hhcchhhhhhhhhccc-cccccCCCCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHhhhhcCCHHHHHHHHHHHHHh
Confidence 222 11222 224677999999999999998854322222333444455555455556667666655543
No 33
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=98.78 E-value=6.1e-08 Score=100.18 Aligned_cols=175 Identities=20% Similarity=0.212 Sum_probs=109.0
Q ss_pred CccCCccccccchHHHHHHHHhCCCCCCCCCceEEEEEccCCChHHHHHHHHHcCcccccccceEEEEEeCCCCCHHHHH
Q 047321 100 LIDEGGVCGRVDEKNELLSKLLCGSSEQQKGLDVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSNTFEEISVA 179 (807)
Q Consensus 100 ~~~~~~~vGR~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~ 179 (807)
.+...+++|.+..+.++++ .+.+.-+.+||++|+||||||+.+.. .....| ..++...+-.+-+
T Consensus 26 ~vGQ~HLlg~~~~lrr~v~---------~~~l~SmIl~GPPG~GKTTlA~liA~--~~~~~f-----~~~sAv~~gvkdl 89 (436)
T COG2256 26 VVGQEHLLGEGKPLRRAVE---------AGHLHSMILWGPPGTGKTTLARLIAG--TTNAAF-----EALSAVTSGVKDL 89 (436)
T ss_pred hcChHhhhCCCchHHHHHh---------cCCCceeEEECCCCCCHHHHHHHHHH--hhCCce-----EEeccccccHHHH
Confidence 3445567777777777666 56788899999999999999999987 333333 2333333323223
Q ss_pred HHHHHHcCCCCCCCccHHHHHHHHHHHHhCCceEEEEeCCCCCCccChHHHHHhhcCCCCCcEEEE--EcCCHHHH---H
Q 047321 180 KAIIEGLGVSAFGLSEFESLMKQIQEYITGKKIFLVLDDVWDGDYKKWDPFFSCLKNGHHESKILI--TTHDRSVA---L 254 (807)
Q Consensus 180 ~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~Ili--TTR~~~v~---~ 254 (807)
+.+++.. -.....|++.+|++|+|..-+..+-+.+.. .-..|.-|+| ||-|+... .
T Consensus 90 r~i~e~a----------------~~~~~~gr~tiLflDEIHRfnK~QQD~lLp---~vE~G~iilIGATTENPsF~ln~A 150 (436)
T COG2256 90 REIIEEA----------------RKNRLLGRRTILFLDEIHRFNKAQQDALLP---HVENGTIILIGATTENPSFELNPA 150 (436)
T ss_pred HHHHHHH----------------HHHHhcCCceEEEEehhhhcChhhhhhhhh---hhcCCeEEEEeccCCCCCeeecHH
Confidence 3332221 122234899999999998776555554444 3455665655 56665432 1
Q ss_pred HhCCCceEeCCCCChhhHHHHHHHHHhccCCc-c-Ccc-chHHHHHHHHHHcCCCHHH
Q 047321 255 QLGSIDIIPVKELGEGECWLLFKQIAFLRRSF-E-DCE-KLEPIGRKIASKCKGLPLA 309 (807)
Q Consensus 255 ~~~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~-~-~~~-~~~~~~~~I~~~c~glPLa 309 (807)
...-..++++++|+.+|-.+++.+.+...... . ... --.++...+++.++|---+
T Consensus 151 LlSR~~vf~lk~L~~~di~~~l~ra~~~~~rgl~~~~~~i~~~a~~~l~~~s~GD~R~ 208 (436)
T COG2256 151 LLSRARVFELKPLSSEDIKKLLKRALLDEERGLGGQIIVLDEEALDYLVRLSNGDARR 208 (436)
T ss_pred HhhhhheeeeecCCHHHHHHHHHHHHhhhhcCCCcccccCCHHHHHHHHHhcCchHHH
Confidence 12335799999999999999998844222111 1 111 2245677888898886543
No 34
>PRK13342 recombination factor protein RarA; Reviewed
Probab=98.77 E-value=2.6e-07 Score=102.11 Aligned_cols=178 Identities=19% Similarity=0.213 Sum_probs=105.8
Q ss_pred CccccccchHHH---HHHHHhCCCCCCCCCceEEEEEccCCChHHHHHHHHHcCcccccccceEEEEEeCCCCCHHHHHH
Q 047321 104 GGVCGRVDEKNE---LLSKLLCGSSEQQKGLDVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSNTFEEISVAK 180 (807)
Q Consensus 104 ~~~vGR~~~~~~---l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~ 180 (807)
.++||++..+.. +..++.. .....+.|+|++|+||||+|+.+++. ....| +.++........++
T Consensus 12 ~d~vGq~~~v~~~~~L~~~i~~------~~~~~ilL~GppGtGKTtLA~~ia~~--~~~~~-----~~l~a~~~~~~~ir 78 (413)
T PRK13342 12 DEVVGQEHLLGPGKPLRRMIEA------GRLSSMILWGPPGTGKTTLARIIAGA--TDAPF-----EALSAVTSGVKDLR 78 (413)
T ss_pred HHhcCcHHHhCcchHHHHHHHc------CCCceEEEECCCCCCHHHHHHHHHHH--hCCCE-----EEEecccccHHHHH
Confidence 357887766554 6666642 34567889999999999999999873 22222 22222211111112
Q ss_pred HHHHHcCCCCCCCccHHHHHHHHHHH-HhCCceEEEEeCCCCCCccChHHHHHhhcCCCCCcEEEE--EcCCHHHH--HH
Q 047321 181 AIIEGLGVSAFGLSEFESLMKQIQEY-ITGKKIFLVLDDVWDGDYKKWDPFFSCLKNGHHESKILI--TTHDRSVA--LQ 255 (807)
Q Consensus 181 ~i~~~l~~~~~~~~~~~~~~~~l~~~-l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~Ili--TTR~~~v~--~~ 255 (807)
.+ ....... ..+++.+|++||++.-.....+.+...+.. |..++| ||.+.... ..
T Consensus 79 ~i-----------------i~~~~~~~~~g~~~vL~IDEi~~l~~~~q~~LL~~le~---~~iilI~att~n~~~~l~~a 138 (413)
T PRK13342 79 EV-----------------IEEARQRRSAGRRTILFIDEIHRFNKAQQDALLPHVED---GTITLIGATTENPSFEVNPA 138 (413)
T ss_pred HH-----------------HHHHHHhhhcCCceEEEEechhhhCHHHHHHHHHHhhc---CcEEEEEeCCCChhhhccHH
Confidence 22 2222111 246788999999987655555556665543 444444 34443211 11
Q ss_pred -hCCCceEeCCCCChhhHHHHHHHHHhccCCccCccchHHHHHHHHHHcCCCHHHHHHHHH
Q 047321 256 -LGSIDIIPVKELGEGECWLLFKQIAFLRRSFEDCEKLEPIGRKIASKCKGLPLAAKVIGN 315 (807)
Q Consensus 256 -~~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~~~~I~~~c~glPLai~~~~~ 315 (807)
..-...+.+.+++.++...++.+.+..... ....-..+....|++.|+|.+..+..+..
T Consensus 139 L~SR~~~~~~~~ls~e~i~~lL~~~l~~~~~-~~i~i~~~al~~l~~~s~Gd~R~aln~Le 198 (413)
T PRK13342 139 LLSRAQVFELKPLSEEDIEQLLKRALEDKER-GLVELDDEALDALARLANGDARRALNLLE 198 (413)
T ss_pred HhccceeeEeCCCCHHHHHHHHHHHHHHhhc-CCCCCCHHHHHHHHHhCCCCHHHHHHHHH
Confidence 122468899999999999999886532111 00022356678899999999977654433
No 35
>COG3899 Predicted ATPase [General function prediction only]
Probab=98.66 E-value=5e-07 Score=107.55 Aligned_cols=314 Identities=16% Similarity=0.164 Sum_probs=178.9
Q ss_pred cccccchHHHHHHHHhCCCCCCCCCceEEEEEccCCChHHHHHHHHHcCcccccccceEEEE---EeCCCCC---HHHHH
Q 047321 106 VCGRVDEKNELLSKLLCGSSEQQKGLDVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWV---CVSNTFE---EISVA 179 (807)
Q Consensus 106 ~vGR~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv---~~~~~~~---~~~~~ 179 (807)
++||+.+++.|.+.+.... .+...++.+.|.+|||||++++.|.. .+.+.+...+-- ....+.. ..+.+
T Consensus 2 l~GRe~ev~~Ll~~f~~v~---~g~~~~~lv~G~sGIGKsalv~ev~~--~i~~~~~~~i~~~f~q~~~~ipl~~lvq~~ 76 (849)
T COG3899 2 LYGRETELAQLLAAFDRVS---KGRGEVVLVAGESGIGKSALVNEVHK--PITQQRGYFIKGKFDQFERNIPLSPLVQAF 76 (849)
T ss_pred CCchHhHHHHHHHHHHHHh---CCCeEEEEEeecCCCcHHHHHHHHHH--HHhccceeeeHhhcccccCCCchHHHHHHH
Confidence 7999999999999997665 34667999999999999999999987 333222111111 1111111 12223
Q ss_pred HHHHHHc-------------------CCCCC-------------C---------CccHHH-----HHHHHHHHH-hCCce
Q 047321 180 KAIIEGL-------------------GVSAF-------------G---------LSEFES-----LMKQIQEYI-TGKKI 212 (807)
Q Consensus 180 ~~i~~~l-------------------~~~~~-------------~---------~~~~~~-----~~~~l~~~l-~~k~~ 212 (807)
++++.++ +.... + ...... ....+.... +.++.
T Consensus 77 r~l~~~ll~~~~~~~~~~~~~il~~~g~~~~~~~~vip~L~~i~g~~~~~~el~~~~~~~r~n~~~~~~i~~~~~~~~pl 156 (849)
T COG3899 77 RDLMGQLLSESDTRILSWRARLLAALGENGQVIIDVIPELELIIGKRPPALELSPTAAQNRFNLAFLRFIQVFTAEEHPL 156 (849)
T ss_pred HHHHHHHhhccchHHHHHHHHHHHHhcccchhHHhhhHHHHhhcCCCcchhhcccchhHHHHHHHHHHHHHHHHhccCCe
Confidence 3333322 21100 0 000000 111122222 45699
Q ss_pred EEEEeCCCCCCccChHHHHHhhcCCCC----CcEE--EEEcCCH--HHHHHhCCCceEeCCCCChhhHHHHHHHHHhccC
Q 047321 213 FLVLDDVWDGDYKKWDPFFSCLKNGHH----ESKI--LITTHDR--SVALQLGSIDIIPVKELGEGECWLLFKQIAFLRR 284 (807)
Q Consensus 213 LlVlDdv~~~~~~~~~~l~~~l~~~~~----gs~I--liTTR~~--~v~~~~~~~~~~~l~~L~~~~~~~Lf~~~a~~~~ 284 (807)
++|+||+...|....+-+......... ...| +.|.+.. .+-..-.....+.|.||+..+...+........
T Consensus 157 Vi~leDlhWaD~~SL~lL~~lm~~~~~~~~~~n~v~~~h~~~~~~~~~~~~~~~i~~I~L~PL~~~d~~~lV~~~l~~~- 235 (849)
T COG3899 157 VIVLEDLHWADSASLKLLQLLMDRIAIGAYRDNEVLLLHPLRPTLGEILKSATNITTITLAPLSRADTNQLVAATLGCT- 235 (849)
T ss_pred EEEEecccccChhHHHHHHHHHHhcchhhhhccccccCCCccchhhHHhhcCCceeEEecCcCchhhHHHHHHHHhCCc-
Confidence 999999966555555544433332221 1123 3333332 111222335689999999999999998765221
Q ss_pred CccCccchHHHHHHHHHHcCCCHHHHHHHHHHhhcC------CCHHHHHHHHhccccccccCCCCchhhHHhcccCCCCc
Q 047321 285 SFEDCEKLEPIGRKIASKCKGLPLAAKVIGNLLRSK------NTAKEWHIILDSEMWKVQEIGQGILAPLLLSYNDLPSN 358 (807)
Q Consensus 285 ~~~~~~~~~~~~~~I~~~c~glPLai~~~~~~l~~~------~~~~~w~~~~~~~~~~~~~~~~~i~~~l~lsy~~L~~~ 358 (807)
.....+..+.|+++..|+|+-+..+-..+... .+...|..-..+ ....... +.+...+..-.+.||.
T Consensus 236 ----~~~~~p~~~~i~~kt~GnPfFi~e~lk~l~~~~~i~f~~~~~~w~~~~~~-i~~~~~~-~~vv~~l~~rl~kL~~- 308 (849)
T COG3899 236 ----KLLPAPLLELIFEKTKGNPFFIEEFLKALYEEGLLVFNFDTGAWQCSIAS-LGILATT-DAVVEFLAARLQKLPG- 308 (849)
T ss_pred ----ccccchHHHHHHHHhcCCCccHHHHHHHHHhCCeeEecCCCcceeccHHh-cCCchhh-HHHHHHHHHHHhcCCH-
Confidence 22335568999999999999999888887664 233344321111 0011111 1245568888999999
Q ss_pred cchhhhhhhhccCCCcceechhHHHHHHHhcCCCCCCCCchHHHHHHHHHHHHhhcCCcceeccCC---CCCcc-EEEEC
Q 047321 359 SMVKRCFSYCAVFPKDYNMNKRELINLWMTQGYLNADEDEEMEMIGEEYFNILATRSFFQEFQKND---DDDFT-SCKMH 434 (807)
Q Consensus 359 ~~~k~cfl~~s~fp~~~~i~~~~li~~W~aeg~i~~~~~~~~e~~~~~~~~~L~~rsll~~~~~~~---~~~~~-~~~mH 434 (807)
..++.+-..|++-. .|+.+.|...|-. .....+...++.|....++-..+... ..... |-..|
T Consensus 309 -~t~~Vl~~AA~iG~--~F~l~~La~l~~~----------~~~~~a~~l~~al~e~lI~~~~~~yr~~~~~~~~~Y~F~H 375 (849)
T COG3899 309 -TTREVLKAAACIGN--RFDLDTLAALAED----------SPALEAAALLDALQEGLILPLSETYRFGSNVDIATYKFLH 375 (849)
T ss_pred -HHHHHHHHHHHhCc--cCCHHHHHHHHhh----------chHHHHHHHHHHhHhhceeccccccccccccchhhHHhhH
Confidence 88999999999854 4566666655521 33455666666666655553222111 11111 12468
Q ss_pred hhHHHHHHHhh
Q 047321 435 DIVNDFAQFVS 445 (807)
Q Consensus 435 dlv~~~a~~~~ 445 (807)
|.+++.|-...
T Consensus 376 ~~vqqaaY~~i 386 (849)
T COG3899 376 DRVQQAAYNLI 386 (849)
T ss_pred HHHHHHHhccC
Confidence 88888886543
No 36
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=98.65 E-value=7.9e-08 Score=88.18 Aligned_cols=118 Identities=19% Similarity=0.265 Sum_probs=79.7
Q ss_pred CceEEEEEccCCChHHHHHHHHHcCcccc---cccceEEEEEeCCCCCHHHHHHHHHHHcCCCCCCCccHHHHHHHHHHH
Q 047321 130 GLDVISLVGLGGIGKTTLAQLAYNNDEVK---RNFEKVIWVCVSNTFEEISVAKAIIEGLGVSAFGLSEFESLMKQIQEY 206 (807)
Q Consensus 130 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~---~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~ 206 (807)
+.+++.|+|++|+|||++++.++.+.... ..-..++|+.+....+...+...|+..++.......+...+...+.+.
T Consensus 3 ~~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~~~~~ 82 (131)
T PF13401_consen 3 SQRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLKSRQTSDELRSLLIDA 82 (131)
T ss_dssp ----EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSSSTS-HHHHHHHHHHH
T ss_pred CCcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCccccccCCHHHHHHHHHHH
Confidence 45789999999999999999998732110 002356699988888999999999999998766656677777888888
Q ss_pred HhCCc-eEEEEeCCCCC-CccChHHHHHhhcCCCCCcEEEEEcCC
Q 047321 207 ITGKK-IFLVLDDVWDG-DYKKWDPFFSCLKNGHHESKILITTHD 249 (807)
Q Consensus 207 l~~k~-~LlVlDdv~~~-~~~~~~~l~~~l~~~~~gs~IliTTR~ 249 (807)
+...+ .+||+||+..- +...++.+..... ..+.+||++.+.
T Consensus 83 l~~~~~~~lviDe~~~l~~~~~l~~l~~l~~--~~~~~vvl~G~~ 125 (131)
T PF13401_consen 83 LDRRRVVLLVIDEADHLFSDEFLEFLRSLLN--ESNIKVVLVGTP 125 (131)
T ss_dssp HHHCTEEEEEEETTHHHHTHHHHHHHHHHTC--SCBEEEEEEESS
T ss_pred HHhcCCeEEEEeChHhcCCHHHHHHHHHHHh--CCCCeEEEEECh
Confidence 86654 59999999543 3333333433333 566677777654
No 37
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=98.64 E-value=2.9e-09 Score=114.34 Aligned_cols=261 Identities=17% Similarity=0.096 Sum_probs=132.8
Q ss_pred CccccCCCCceeEEEeCCCCCCCCCCCC-----ccccccccCcccceeeeccccCCccCeeEecCccCCCcccccccccc
Q 047321 482 FPMSIHGLNRLRTLLIYDQSPYNPSLSS-----SILPELFNKLACLRALVIRQSLRTLEKFVVGGGVDGSNTCRLESLKN 556 (807)
Q Consensus 482 ~~~~~~~l~~Lr~L~l~~~~~~~l~~~i-----~~LP~~i~~L~~L~~LdL~~~L~~L~~l~~~~~~~~~~~~~i~~L~~ 556 (807)
.+..+..+.+|+.|.+.++ .+ ..++..+...++|++|+++.+ .+... .. ........+..
T Consensus 15 ~~~~~~~l~~L~~l~l~~~-------~l~~~~~~~i~~~l~~~~~l~~l~l~~~--~~~~~---~~---~~~~~~~~l~~ 79 (319)
T cd00116 15 ATELLPKLLCLQVLRLEGN-------TLGEEAAKALASALRPQPSLKELCLSLN--ETGRI---PR---GLQSLLQGLTK 79 (319)
T ss_pred hHHHHHHHhhccEEeecCC-------CCcHHHHHHHHHHHhhCCCceEEecccc--ccCCc---ch---HHHHHHHHHHh
Confidence 3444455666777777776 33 346666677777777777511 00000 00 00112234455
Q ss_pred ccccCcccccCCCCCCChhHHHHhhccCCCCCCeEEEEeeccCCCcchhhhhchhhHHHHHHhhcCCCCCCCCCCCc-c-
Q 047321 557 LQLLRECGIEGLGNVSHLDEAERLQLYNQQNLLRLRLRFGRVVDGEDEERRRKNEKDKQLLEALQPPLSHLPPLGKL-P- 634 (807)
Q Consensus 557 L~~L~~L~i~~l~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~l~p~~~~lp~l~~L-~- 634 (807)
+.+|+.|.+++..-.............. ++|+.|++++|.+.+ .....+... +..+ +
T Consensus 80 ~~~L~~L~l~~~~~~~~~~~~~~~l~~~-~~L~~L~ls~~~~~~----------~~~~~l~~~----------l~~~~~~ 138 (319)
T cd00116 80 GCGLQELDLSDNALGPDGCGVLESLLRS-SSLQELKLNNNGLGD----------RGLRLLAKG----------LKDLPPA 138 (319)
T ss_pred cCceeEEEccCCCCChhHHHHHHHHhcc-CcccEEEeeCCccch----------HHHHHHHHH----------HHhCCCC
Confidence 6666666666533221222222222233 668888888776321 000111111 2233 5
Q ss_pred cceEeccCCcCceeeCcccCCCCCCCCCCCCCCCCCCccccCcccccccccCCCccccchhhhccccCCCCCCcccEEEE
Q 047321 635 LKKLELRDLESVKRVGNEFLGIEESSEDDPSSSSSSPSVIAFPKLKSLEIDGMKELEEWNYRITRKENISIMPRLSSLQI 714 (807)
Q Consensus 635 L~~L~L~~~~~l~~i~~~~~~~~~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~l~~L~~L~l 714 (807)
|+.|++++|.-.......+. ..+..+++|+.|+++++ .+..-.. ......+..+++|+.|++
T Consensus 139 L~~L~L~~n~l~~~~~~~~~----------------~~~~~~~~L~~L~l~~n-~l~~~~~-~~l~~~l~~~~~L~~L~L 200 (319)
T cd00116 139 LEKLVLGRNRLEGASCEALA----------------KALRANRDLKELNLANN-GIGDAGI-RALAEGLKANCNLEVLDL 200 (319)
T ss_pred ceEEEcCCCcCCchHHHHHH----------------HHHHhCCCcCEEECcCC-CCchHHH-HHHHHHHHhCCCCCEEec
Confidence 88888887652211000000 00224567888888775 3331100 000012234568888888
Q ss_pred ccCCCCC-----CCcccccCCCCccEEeeccCccccccc--ccccccCCCCCCCCeeeeccCCCc----ccCCccCCCCC
Q 047321 715 MNCRKLK-----ALPDYLLQTIALQKLSIYSCDLLEELP--ILEDRRTTDIPRLSSLAIWYCPKL----KVLPDYLLRTT 783 (807)
Q Consensus 715 ~~c~~L~-----~lp~~l~~l~~L~~L~l~~c~~l~~lP--~~~~~~~~~l~~L~~L~i~~c~~l----~~lP~~l~~l~ 783 (807)
++| .+. .++..+..+++|++|++++|+ +.... .+........+.|++|++.+|... ..++..+..++
T Consensus 201 ~~n-~i~~~~~~~l~~~~~~~~~L~~L~ls~n~-l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~ 278 (319)
T cd00116 201 NNN-GLTDEGASALAETLASLKSLEVLNLGDNN-LTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKE 278 (319)
T ss_pred cCC-ccChHHHHHHHHHhcccCCCCEEecCCCc-CchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCC
Confidence 888 343 234455667888888888864 33210 000000113468888888876532 23445556667
Q ss_pred cccccccccchhhhh
Q 047321 784 TLQAGEQDYENEKFS 798 (807)
Q Consensus 784 ~L~~L~l~~~~~~~~ 798 (807)
.|+.+++++|.+...
T Consensus 279 ~L~~l~l~~N~l~~~ 293 (319)
T cd00116 279 SLLELDLRGNKFGEE 293 (319)
T ss_pred CccEEECCCCCCcHH
Confidence 888888888887644
No 38
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=98.61 E-value=9.4e-07 Score=89.57 Aligned_cols=169 Identities=16% Similarity=0.137 Sum_probs=99.9
Q ss_pred cchHHHHHHHHhCCCCCCCCCceEEEEEccCCChHHHHHHHHHcCcccccccceEEEEEeCCCCCHHHHHHHHHHHcCCC
Q 047321 110 VDEKNELLSKLLCGSSEQQKGLDVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSNTFEEISVAKAIIEGLGVS 189 (807)
Q Consensus 110 ~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~ 189 (807)
+..++.+..++. ......+.|+|+.|+|||+||+.+++. ........++++++.-.+ ..
T Consensus 23 ~~~~~~l~~~~~------~~~~~~lll~G~~G~GKT~la~~~~~~--~~~~~~~~~~i~~~~~~~------~~------- 81 (226)
T TIGR03420 23 AELLAALRQLAA------GKGDRFLYLWGESGSGKSHLLQAACAA--AEERGKSAIYLPLAELAQ------AD------- 81 (226)
T ss_pred HHHHHHHHHHHh------cCCCCeEEEECCCCCCHHHHHHHHHHH--HHhcCCcEEEEeHHHHHH------hH-------
Confidence 345666666653 234678999999999999999999874 222223344554332211 00
Q ss_pred CCCCccHHHHHHHHHHHHhCCceEEEEeCCCCCCcc-ChH-HHHHhhcCC-CCCcEEEEEcCCHH---------HHHHhC
Q 047321 190 AFGLSEFESLMKQIQEYITGKKIFLVLDDVWDGDYK-KWD-PFFSCLKNG-HHESKILITTHDRS---------VALQLG 257 (807)
Q Consensus 190 ~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~-~~~-~l~~~l~~~-~~gs~IliTTR~~~---------v~~~~~ 257 (807)
..+...+. +.-+||+||+..-... .|. .+...+... ..+.+||+||+... +...+.
T Consensus 82 -----------~~~~~~~~-~~~lLvIDdi~~l~~~~~~~~~L~~~l~~~~~~~~~iIits~~~~~~~~~~~~~L~~r~~ 149 (226)
T TIGR03420 82 -----------PEVLEGLE-QADLVCLDDVEAIAGQPEWQEALFHLYNRVREAGGRLLIAGRAAPAQLPLRLPDLRTRLA 149 (226)
T ss_pred -----------HHHHhhcc-cCCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCeEEEECCCChHHCCcccHHHHHHHh
Confidence 00111122 2348999999654322 333 355444321 23447888887532 222332
Q ss_pred CCceEeCCCCChhhHHHHHHHHHhccCCccCccchHHHHHHHHHHcCCCHHHHHHHHH
Q 047321 258 SIDIIPVKELGEGECWLLFKQIAFLRRSFEDCEKLEPIGRKIASKCKGLPLAAKVIGN 315 (807)
Q Consensus 258 ~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~~~~I~~~c~glPLai~~~~~ 315 (807)
....+++.+++.++...++...+-..+. .--.+..+.|++.+.|.|..+..+..
T Consensus 150 ~~~~i~l~~l~~~e~~~~l~~~~~~~~~----~~~~~~l~~L~~~~~gn~r~L~~~l~ 203 (226)
T TIGR03420 150 WGLVFQLPPLSDEEKIAALQSRAARRGL----QLPDEVADYLLRHGSRDMGSLMALLD 203 (226)
T ss_pred cCeeEecCCCCHHHHHHHHHHHHHHcCC----CCCHHHHHHHHHhccCCHHHHHHHHH
Confidence 2457899999999999999876532221 12245668888889999987766543
No 39
>PRK04195 replication factor C large subunit; Provisional
Probab=98.59 E-value=3.6e-06 Score=94.92 Aligned_cols=248 Identities=17% Similarity=0.156 Sum_probs=138.7
Q ss_pred CccccccchHHHHHHHHhCCCCCCCCCceEEEEEccCCChHHHHHHHHHcCcccccccceEEEEEeCCCCCHHHHHHHHH
Q 047321 104 GGVCGRVDEKNELLSKLLCGSSEQQKGLDVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSNTFEEISVAKAII 183 (807)
Q Consensus 104 ~~~vGR~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 183 (807)
.+++|+++.++++.+++..... +...+.+.|+|++|+||||+|+.+++... |+ .+-++.++..... ....++
T Consensus 14 ~dlvg~~~~~~~l~~~l~~~~~--g~~~~~lLL~GppG~GKTtla~ala~el~----~~-~ielnasd~r~~~-~i~~~i 85 (482)
T PRK04195 14 SDVVGNEKAKEQLREWIESWLK--GKPKKALLLYGPPGVGKTSLAHALANDYG----WE-VIELNASDQRTAD-VIERVA 85 (482)
T ss_pred HHhcCCHHHHHHHHHHHHHHhc--CCCCCeEEEECCCCCCHHHHHHHHHHHcC----CC-EEEEcccccccHH-HHHHHH
Confidence 4699999999999999865332 22378899999999999999999998431 22 2233444332222 222222
Q ss_pred HHcCCCCCCCccHHHHHHHHHHHHhCCceEEEEeCCCCCCc----cChHHHHHhhcCCCCCcEEEEEcCCH-HHHH-Hh-
Q 047321 184 EGLGVSAFGLSEFESLMKQIQEYITGKKIFLVLDDVWDGDY----KKWDPFFSCLKNGHHESKILITTHDR-SVAL-QL- 256 (807)
Q Consensus 184 ~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~----~~~~~l~~~l~~~~~gs~IliTTR~~-~v~~-~~- 256 (807)
....... .....++-+||+||++.-.. ..+..+...+... +..||+|+.+. .... .+
T Consensus 86 ~~~~~~~--------------sl~~~~~kvIiIDEaD~L~~~~d~~~~~aL~~~l~~~--~~~iIli~n~~~~~~~k~Lr 149 (482)
T PRK04195 86 GEAATSG--------------SLFGARRKLILLDEVDGIHGNEDRGGARAILELIKKA--KQPIILTANDPYDPSLRELR 149 (482)
T ss_pred HHhhccC--------------cccCCCCeEEEEecCcccccccchhHHHHHHHHHHcC--CCCEEEeccCccccchhhHh
Confidence 2221110 00113678999999965322 2345566655532 23466665432 1211 11
Q ss_pred CCCceEeCCCCChhhHHHHHHHHHhccCCccCccchHHHHHHHHHHcCCCHHHHHHHHHHhhcC-C--CHHHHHHHHhcc
Q 047321 257 GSIDIIPVKELGEGECWLLFKQIAFLRRSFEDCEKLEPIGRKIASKCKGLPLAAKVIGNLLRSK-N--TAKEWHIILDSE 333 (807)
Q Consensus 257 ~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~~~~I~~~c~glPLai~~~~~~l~~~-~--~~~~w~~~~~~~ 333 (807)
.....+++.+++.++....+.+.+...+.. . -.++...|++.++|-.-.+......+... . +.+.-..+..
T Consensus 150 sr~~~I~f~~~~~~~i~~~L~~i~~~egi~-i---~~eaL~~Ia~~s~GDlR~ain~Lq~~a~~~~~it~~~v~~~~~-- 223 (482)
T PRK04195 150 NACLMIEFKRLSTRSIVPVLKRICRKEGIE-C---DDEALKEIAERSGGDLRSAINDLQAIAEGYGKLTLEDVKTLGR-- 223 (482)
T ss_pred ccceEEEecCCCHHHHHHHHHHHHHHcCCC-C---CHHHHHHHHHHcCCCHHHHHHHHHHHhcCCCCCcHHHHHHhhc--
Confidence 224578999999999999988877543321 1 24567999999999876654433333332 1 2333332221
Q ss_pred ccccccCCCCchhhHHhcccCCCCccchhhhhhhhccCCCcceechhHHHHHHHhcCCCCC
Q 047321 334 MWKVQEIGQGILAPLLLSYNDLPSNSMVKRCFSYCAVFPKDYNMNKRELINLWMTQGYLNA 394 (807)
Q Consensus 334 ~~~~~~~~~~i~~~l~lsy~~L~~~~~~k~cfl~~s~fp~~~~i~~~~li~~W~aeg~i~~ 394 (807)
.+....++.++..-+..=..+ .+...+..+ .++. ..+-.|+.|.+...
T Consensus 224 ----~d~~~~if~~l~~i~~~k~~~-~a~~~~~~~-------~~~~-~~i~~~l~en~~~~ 271 (482)
T PRK04195 224 ----RDREESIFDALDAVFKARNAD-QALEASYDV-------DEDP-DDLIEWIDENIPKE 271 (482)
T ss_pred ----CCCCCCHHHHHHHHHCCCCHH-HHHHHHHcc-------cCCH-HHHHHHHHhccccc
Confidence 111234666666554411111 222222221 1222 34678999999764
No 40
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=98.59 E-value=1.9e-06 Score=91.66 Aligned_cols=179 Identities=13% Similarity=0.126 Sum_probs=117.0
Q ss_pred CccccccchHHHHHHHHhCCCCCCCCCceEEEEEccCCChHHHHHHHHHcC----cccccccceEEEEEe-CCCCCHHHH
Q 047321 104 GGVCGRVDEKNELLSKLLCGSSEQQKGLDVISLVGLGGIGKTTLAQLAYNN----DEVKRNFEKVIWVCV-SNTFEEISV 178 (807)
Q Consensus 104 ~~~vGR~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~----~~~~~~f~~~~wv~~-~~~~~~~~~ 178 (807)
.+++|.+..++.+...+..+ .-...+.++|+.|+||||+|+.++.. .....|.|...|... +....+.+
T Consensus 4 ~~i~g~~~~~~~l~~~~~~~-----~~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~~~~~~~i~v~~- 77 (313)
T PRK05564 4 HTIIGHENIKNRIKNSIIKN-----RFSHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEFKPINKKSIGVDD- 77 (313)
T ss_pred hhccCcHHHHHHHHHHHHcC-----CCCceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEeccccCCCCCHHH-
Confidence 35889888899999998643 24567889999999999999988762 112345565555432 22222222
Q ss_pred HHHHHHHcCCCCCCCccHHHHHHHHHHHHhCCceEEEEeCCCCCCccChHHHHHhhcCCCCCcEEEEEcCCHHHH-HH-h
Q 047321 179 AKAIIEGLGVSAFGLSEFESLMKQIQEYITGKKIFLVLDDVWDGDYKKWDPFFSCLKNGHHESKILITTHDRSVA-LQ-L 256 (807)
Q Consensus 179 ~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~IliTTR~~~v~-~~-~ 256 (807)
.+++.+.+... -..+++-++|+|++..-+...+..+...+.....++.+|++|.+.+.. .. .
T Consensus 78 ir~~~~~~~~~----------------p~~~~~kv~iI~~ad~m~~~a~naLLK~LEepp~~t~~il~~~~~~~ll~TI~ 141 (313)
T PRK05564 78 IRNIIEEVNKK----------------PYEGDKKVIIIYNSEKMTEQAQNAFLKTIEEPPKGVFIILLCENLEQILDTIK 141 (313)
T ss_pred HHHHHHHHhcC----------------cccCCceEEEEechhhcCHHHHHHHHHHhcCCCCCeEEEEEeCChHhCcHHHH
Confidence 12222222111 113566788888886666678888999998888889999888765422 11 1
Q ss_pred CCCceEeCCCCChhhHHHHHHHHHhccCCccCccchHHHHHHHHHHcCCCHHHHHH
Q 047321 257 GSIDIIPVKELGEGECWLLFKQIAFLRRSFEDCEKLEPIGRKIASKCKGLPLAAKV 312 (807)
Q Consensus 257 ~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~~~~I~~~c~glPLai~~ 312 (807)
.-...+.+.++++++....+.+...+ .-.+.+..++..++|.|.-+..
T Consensus 142 SRc~~~~~~~~~~~~~~~~l~~~~~~--------~~~~~~~~l~~~~~g~~~~a~~ 189 (313)
T PRK05564 142 SRCQIYKLNRLSKEEIEKFISYKYND--------IKEEEKKSAIAFSDGIPGKVEK 189 (313)
T ss_pred hhceeeeCCCcCHHHHHHHHHHHhcC--------CCHHHHHHHHHHcCCCHHHHHH
Confidence 22468999999999998877654311 1123467889999999876543
No 41
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.58 E-value=3.2e-06 Score=91.68 Aligned_cols=191 Identities=19% Similarity=0.220 Sum_probs=112.2
Q ss_pred CccccccchHHHHHHHHhCCCCCCCCCceEEEEEccCCChHHHHHHHHHcCcccccccceEEEEEeCCCCCHHHHHHHHH
Q 047321 104 GGVCGRVDEKNELLSKLLCGSSEQQKGLDVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSNTFEEISVAKAII 183 (807)
Q Consensus 104 ~~~vGR~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 183 (807)
.+++|.+..++.+...+..+. -...+.++|+.|+||||+|+.+++......... ......-...+.+.
T Consensus 16 ~~iiGq~~~~~~l~~~~~~~~-----~~h~~L~~Gp~G~GKTtla~~la~~l~c~~~~~-------~~pc~~c~~c~~~~ 83 (363)
T PRK14961 16 RDIIGQKHIVTAISNGLSLGR-----IHHAWLLSGTRGVGKTTIARLLAKSLNCQNGIT-------SNPCRKCIICKEIE 83 (363)
T ss_pred hhccChHHHHHHHHHHHHcCC-----CCeEEEEecCCCCCHHHHHHHHHHHhcCCCCCC-------CCCCCCCHHHHHHh
Confidence 468999999999998887422 345678999999999999999976321110000 00000000111111
Q ss_pred HHcCC-----CCCCCccHHHHHHHHHHHH-----hCCceEEEEeCCCCCCccChHHHHHhhcCCCCCcEEEEEcCCH-HH
Q 047321 184 EGLGV-----SAFGLSEFESLMKQIQEYI-----TGKKIFLVLDDVWDGDYKKWDPFFSCLKNGHHESKILITTHDR-SV 252 (807)
Q Consensus 184 ~~l~~-----~~~~~~~~~~~~~~l~~~l-----~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~IliTTR~~-~v 252 (807)
..... ........++. +.+.+.+ .+++-++|+|++..-....++.+...+.......++|++|.+. .+
T Consensus 84 ~~~~~d~~~~~~~~~~~v~~i-r~i~~~~~~~p~~~~~kviIIDEa~~l~~~a~naLLk~lEe~~~~~~fIl~t~~~~~l 162 (363)
T PRK14961 84 KGLCLDLIEIDAASRTKVEEM-REILDNIYYSPSKSRFKVYLIDEVHMLSRHSFNALLKTLEEPPQHIKFILATTDVEKI 162 (363)
T ss_pred cCCCCceEEecccccCCHHHH-HHHHHHHhcCcccCCceEEEEEChhhcCHHHHHHHHHHHhcCCCCeEEEEEcCChHhh
Confidence 10000 00000112221 1122221 2456699999997665556777887777666667777776553 33
Q ss_pred HHHh-CCCceEeCCCCChhhHHHHHHHHHhccCCccCccchHHHHHHHHHHcCCCHHHHH
Q 047321 253 ALQL-GSIDIIPVKELGEGECWLLFKQIAFLRRSFEDCEKLEPIGRKIASKCKGLPLAAK 311 (807)
Q Consensus 253 ~~~~-~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~~~~I~~~c~glPLai~ 311 (807)
...+ .-...+++.+++.++..+.+...+...+.. --.+.+..|++.++|.|-.+.
T Consensus 163 ~~tI~SRc~~~~~~~l~~~el~~~L~~~~~~~g~~----i~~~al~~ia~~s~G~~R~al 218 (363)
T PRK14961 163 PKTILSRCLQFKLKIISEEKIFNFLKYILIKESID----TDEYALKLIAYHAHGSMRDAL 218 (363)
T ss_pred hHHHHhhceEEeCCCCCHHHHHHHHHHHHHHcCCC----CCHHHHHHHHHHcCCCHHHHH
Confidence 3222 224689999999999999888876443321 124567889999999886443
No 42
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.56 E-value=3.6e-07 Score=102.20 Aligned_cols=197 Identities=16% Similarity=0.125 Sum_probs=114.8
Q ss_pred CccccccchHHHHHHHHhCCCCCCCCCceEEEEEccCCChHHHHHHHHHcCcccccccceEEEEEeCCCCCHHHHHHHHH
Q 047321 104 GGVCGRVDEKNELLSKLLCGSSEQQKGLDVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSNTFEEISVAKAII 183 (807)
Q Consensus 104 ~~~vGR~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 183 (807)
.+++|.+..++.|..++.... -...+.++|+.|+||||+|+.+++.......+....|.|.+.. .+.......+
T Consensus 14 ~dvvGq~~v~~~L~~~i~~~~-----l~ha~Lf~GppGtGKTTlA~~lA~~l~c~~~~~~~cg~C~sc~-~i~~~~h~dv 87 (504)
T PRK14963 14 DEVVGQEHVKEVLLAALRQGR-----LGHAYLFSGPRGVGKTTTARLIAMAVNCSGEDPKPCGECESCL-AVRRGAHPDV 87 (504)
T ss_pred HHhcChHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHHHhccCCCCCCCCcChhhH-HHhcCCCCce
Confidence 368999998888988887432 3456799999999999999998764221111211222221100 0000000000
Q ss_pred HHcCCC-CCCCccHHHHHHHHHH-HHhCCceEEEEeCCCCCCccChHHHHHhhcCCCCCcEEEEEcCC-HHHHHHh-CCC
Q 047321 184 EGLGVS-AFGLSEFESLMKQIQE-YITGKKIFLVLDDVWDGDYKKWDPFFSCLKNGHHESKILITTHD-RSVALQL-GSI 259 (807)
Q Consensus 184 ~~l~~~-~~~~~~~~~~~~~l~~-~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~IliTTR~-~~v~~~~-~~~ 259 (807)
..+... .....+..++...+.. -..+++-++|+|+++......+..+...+......+.+|++|.. ..+...+ ...
T Consensus 88 ~el~~~~~~~vd~iR~l~~~~~~~p~~~~~kVVIIDEad~ls~~a~naLLk~LEep~~~t~~Il~t~~~~kl~~~I~SRc 167 (504)
T PRK14963 88 LEIDAASNNSVEDVRDLREKVLLAPLRGGRKVYILDEAHMMSKSAFNALLKTLEEPPEHVIFILATTEPEKMPPTILSRT 167 (504)
T ss_pred EEecccccCCHHHHHHHHHHHhhccccCCCeEEEEECccccCHHHHHHHHHHHHhCCCCEEEEEEcCChhhCChHHhcce
Confidence 000000 0111112222222221 12356779999999776666777788888766556666665544 3332222 224
Q ss_pred ceEeCCCCChhhHHHHHHHHHhccCCccCccchHHHHHHHHHHcCCCHHHH
Q 047321 260 DIIPVKELGEGECWLLFKQIAFLRRSFEDCEKLEPIGRKIASKCKGLPLAA 310 (807)
Q Consensus 260 ~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~~~~I~~~c~glPLai 310 (807)
..+++.+++.++....+.+.+...+.. --.+.+..|++.++|.+--+
T Consensus 168 ~~~~f~~ls~~el~~~L~~i~~~egi~----i~~~Al~~ia~~s~GdlR~a 214 (504)
T PRK14963 168 QHFRFRRLTEEEIAGKLRRLLEAEGRE----AEPEALQLVARLADGAMRDA 214 (504)
T ss_pred EEEEecCCCHHHHHHHHHHHHHHcCCC----CCHHHHHHHHHHcCCCHHHH
Confidence 689999999999999999887544321 12456789999999998644
No 43
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=98.56 E-value=5.4e-07 Score=84.30 Aligned_cols=125 Identities=18% Similarity=0.128 Sum_probs=73.0
Q ss_pred ccccchHHHHHHHHhCCCCCCCCCceEEEEEccCCChHHHHHHHHHcCcccccccceEEEEEeCCCCCHHHHHHHHHHHc
Q 047321 107 CGRVDEKNELLSKLLCGSSEQQKGLDVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSNTFEEISVAKAIIEGL 186 (807)
Q Consensus 107 vGR~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l 186 (807)
+|++..++.+...+.. ...+.+.|+|++|+|||++|+.+++... ..-..++++...+..........+...
T Consensus 1 ~~~~~~~~~i~~~~~~------~~~~~v~i~G~~G~GKT~l~~~i~~~~~--~~~~~v~~~~~~~~~~~~~~~~~~~~~- 71 (151)
T cd00009 1 VGQEEAIEALREALEL------PPPKNLLLYGPPGTGKTTLARAIANELF--RPGAPFLYLNASDLLEGLVVAELFGHF- 71 (151)
T ss_pred CchHHHHHHHHHHHhC------CCCCeEEEECCCCCCHHHHHHHHHHHhh--cCCCCeEEEehhhhhhhhHHHHHhhhh-
Confidence 4788889999888863 2456899999999999999999998432 212345566554443322211111000
Q ss_pred CCCCCCCccHHHHHHHHHHHHhCCceEEEEeCCCCCCccChHHHHHhhcCC------CCCcEEEEEcCCHH
Q 047321 187 GVSAFGLSEFESLMKQIQEYITGKKIFLVLDDVWDGDYKKWDPFFSCLKNG------HHESKILITTHDRS 251 (807)
Q Consensus 187 ~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~------~~gs~IliTTR~~~ 251 (807)
............++.++|+||++.........+...+... ..+..||+||....
T Consensus 72 -----------~~~~~~~~~~~~~~~~lilDe~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~~ 131 (151)
T cd00009 72 -----------LVRLLFELAEKAKPGVLFIDEIDSLSRGAQNALLRVLETLNDLRIDRENVRVIGATNRPL 131 (151)
T ss_pred -----------hHhHHHHhhccCCCeEEEEeChhhhhHHHHHHHHHHHHhcCceeccCCCeEEEEecCccc
Confidence 0011112223457889999999753222233344444332 35778888887643
No 44
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=98.55 E-value=6.5e-07 Score=86.75 Aligned_cols=182 Identities=21% Similarity=0.243 Sum_probs=99.2
Q ss_pred CccccccchHHHHHHHHhCCCCCCCCCceEEEEEccCCChHHHHHHHHHcCcccccccceEEEEEeCCCCCHHHHHHHHH
Q 047321 104 GGVCGRVDEKNELLSKLLCGSSEQQKGLDVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSNTFEEISVAKAII 183 (807)
Q Consensus 104 ~~~vGR~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 183 (807)
.+|||.+.-++.+.-++...... .....-+.++|++|+||||||..+++ .....|. +++. ...+
T Consensus 24 ~efiGQ~~l~~~l~i~i~aa~~r-~~~l~h~lf~GPPG~GKTTLA~IIA~--e~~~~~~---~~sg-~~i~--------- 87 (233)
T PF05496_consen 24 DEFIGQEHLKGNLKILIRAAKKR-GEALDHMLFYGPPGLGKTTLARIIAN--ELGVNFK---ITSG-PAIE--------- 87 (233)
T ss_dssp CCS-S-HHHHHHHHHHHHHHHCT-TS---EEEEESSTTSSHHHHHHHHHH--HCT--EE---EEEC-CC-----------
T ss_pred HHccCcHHHHhhhHHHHHHHHhc-CCCcceEEEECCCccchhHHHHHHHh--ccCCCeE---eccc-hhhh---------
Confidence 57999998888765554322110 23577899999999999999999998 4444442 2221 1111
Q ss_pred HHcCCCCCCCccHHHHHHHHHHHHhCCceEEEEeCCCCCCccChHHHHHhhcCCC------CC-------------cEEE
Q 047321 184 EGLGVSAFGLSEFESLMKQIQEYITGKKIFLVLDDVWDGDYKKWDPFFSCLKNGH------HE-------------SKIL 244 (807)
Q Consensus 184 ~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~------~g-------------s~Il 244 (807)
...++...+.. + +++.+|.+|++..-+..+-+.+...+.++. .| +-|=
T Consensus 88 -----------k~~dl~~il~~-l-~~~~ILFIDEIHRlnk~~qe~LlpamEd~~idiiiG~g~~ar~~~~~l~~FTlig 154 (233)
T PF05496_consen 88 -----------KAGDLAAILTN-L-KEGDILFIDEIHRLNKAQQEILLPAMEDGKIDIIIGKGPNARSIRINLPPFTLIG 154 (233)
T ss_dssp -----------SCHHHHHHHHT----TT-EEEECTCCC--HHHHHHHHHHHHCSEEEEEBSSSSS-BEEEEE----EEEE
T ss_pred -----------hHHHHHHHHHh-c-CCCcEEEEechhhccHHHHHHHHHHhccCeEEEEeccccccceeeccCCCceEee
Confidence 01111111111 2 245678889997766555555666655431 11 2355
Q ss_pred EEcCCHHHHHHhCCCc--eEeCCCCChhhHHHHHHHHHhccCCccCccchHHHHHHHHHHcCCCHHHHHHHHHHhh
Q 047321 245 ITTHDRSVALQLGSID--IIPVKELGEGECWLLFKQIAFLRRSFEDCEKLEPIGRKIASKCKGLPLAAKVIGNLLR 318 (807)
Q Consensus 245 iTTR~~~v~~~~~~~~--~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~~~~I~~~c~glPLai~~~~~~l~ 318 (807)
.|||.-.+...+.... ..+++..+.+|-..+..+.+-.-+ -+-..+.+.+|++++.|-|--+.-+-+.++
T Consensus 155 ATTr~g~ls~pLrdRFgi~~~l~~Y~~~el~~Iv~r~a~~l~----i~i~~~~~~~Ia~rsrGtPRiAnrll~rvr 226 (233)
T PF05496_consen 155 ATTRAGLLSSPLRDRFGIVLRLEFYSEEELAKIVKRSARILN----IEIDEDAAEEIARRSRGTPRIANRLLRRVR 226 (233)
T ss_dssp EESSGCCTSHCCCTTSSEEEE----THHHHHHHHHHCCHCTT-----EE-HHHHHHHHHCTTTSHHHHHHHHHHHC
T ss_pred eeccccccchhHHhhcceecchhcCCHHHHHHHHHHHHHHhC----CCcCHHHHHHHHHhcCCChHHHHHHHHHHH
Confidence 6777654443333322 458999999999999987663322 223457899999999999976655444443
No 45
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=98.54 E-value=7.9e-06 Score=87.62 Aligned_cols=207 Identities=17% Similarity=0.156 Sum_probs=131.0
Q ss_pred CccccccchHHHHHHHHhCCCCCCCCCceEEEEEccCCChHHHHHHHHHcCcccccccc--eEEEEEeCCCCCHHHHHHH
Q 047321 104 GGVCGRVDEKNELLSKLLCGSSEQQKGLDVISLVGLGGIGKTTLAQLAYNNDEVKRNFE--KVIWVCVSNTFEEISVAKA 181 (807)
Q Consensus 104 ~~~vGR~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~--~~~wv~~~~~~~~~~~~~~ 181 (807)
..+.+|+++++++...|...-. +....-+.|+|..|+|||+.++.++. ++..... ..++|++....+..+++..
T Consensus 17 ~~l~~Re~ei~~l~~~l~~~~~--~~~p~n~~iyG~~GTGKT~~~~~v~~--~l~~~~~~~~~~yINc~~~~t~~~i~~~ 92 (366)
T COG1474 17 EELPHREEEINQLASFLAPALR--GERPSNIIIYGPTGTGKTATVKFVME--ELEESSANVEVVYINCLELRTPYQVLSK 92 (366)
T ss_pred ccccccHHHHHHHHHHHHHHhc--CCCCccEEEECCCCCCHhHHHHHHHH--HHHhhhccCceEEEeeeeCCCHHHHHHH
Confidence 3499999999999988866543 22333499999999999999999998 3433321 1689999999999999999
Q ss_pred HHHHcCCCCCCCccHHHHHHHHHHHH--hCCceEEEEeCCCCCCccChHHHHHhhcCCCC-CcE--EEEEcCCHHHHHHh
Q 047321 182 IIEGLGVSAFGLSEFESLMKQIQEYI--TGKKIFLVLDDVWDGDYKKWDPFFSCLKNGHH-ESK--ILITTHDRSVALQL 256 (807)
Q Consensus 182 i~~~l~~~~~~~~~~~~~~~~l~~~l--~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~-gs~--IliTTR~~~v~~~~ 256 (807)
|++.++..........+....+.+.+ .++.+++|||++..-....-+.+...+..... .++ ||.++-+..+...+
T Consensus 93 i~~~~~~~p~~g~~~~~~~~~l~~~~~~~~~~~IvvLDEid~L~~~~~~~LY~L~r~~~~~~~~v~vi~i~n~~~~~~~l 172 (366)
T COG1474 93 ILNKLGKVPLTGDSSLEILKRLYDNLSKKGKTVIVILDEVDALVDKDGEVLYSLLRAPGENKVKVSIIAVSNDDKFLDYL 172 (366)
T ss_pred HHHHcCCCCCCCCchHHHHHHHHHHHHhcCCeEEEEEcchhhhccccchHHHHHHhhccccceeEEEEEEeccHHHHHHh
Confidence 99999754444445555666666666 35899999999955321211344444443322 344 34444444443332
Q ss_pred CC-------CceEeCCCCChhhHHHHHHHHHhccCC-ccCccchHHHHHHHHHHcC-CCHHHHHHHH
Q 047321 257 GS-------IDIIPVKELGEGECWLLFKQIAFLRRS-FEDCEKLEPIGRKIASKCK-GLPLAAKVIG 314 (807)
Q Consensus 257 ~~-------~~~~~l~~L~~~~~~~Lf~~~a~~~~~-~~~~~~~~~~~~~I~~~c~-glPLai~~~~ 314 (807)
.+ ...+..++.+.++-...+..++-..-. ....+...+.+..++..-+ -.=.||..+-
T Consensus 173 d~rv~s~l~~~~I~F~pY~a~el~~Il~~R~~~~~~~~~~~~~vl~lia~~~a~~~GDAR~aidilr 239 (366)
T COG1474 173 DPRVKSSLGPSEIVFPPYTAEELYDILRERVEEGFSAGVIDDDVLKLIAALVAAESGDARKAIDILR 239 (366)
T ss_pred hhhhhhccCcceeeeCCCCHHHHHHHHHHHHHhhccCCCcCccHHHHHHHHHHHcCccHHHHHHHHH
Confidence 21 224778999999999999988742211 1122333333344444444 4445555443
No 46
>PTZ00202 tuzin; Provisional
Probab=98.53 E-value=4.7e-06 Score=88.06 Aligned_cols=169 Identities=15% Similarity=0.212 Sum_probs=105.1
Q ss_pred cCCCccCCccccccchHHHHHHHHhCCCCCCCCCceEEEEEccCCChHHHHHHHHHcCcccccccceEEEEEeCCCCCHH
Q 047321 97 TTSLIDEGGVCGRVDEKNELLSKLLCGSSEQQKGLDVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSNTFEEI 176 (807)
Q Consensus 97 ~~~~~~~~~~vGR~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~ 176 (807)
...+.+.+.|+||+++...|...|...+. ...++++|+|++|+|||||++.+..... + ...+++.. ...
T Consensus 255 ~~lPa~~~~FVGReaEla~Lr~VL~~~d~---~~privvLtG~~G~GKTTLlR~~~~~l~----~-~qL~vNpr---g~e 323 (550)
T PTZ00202 255 QSAPAVIRQFVSREAEESWVRQVLRRLDT---AHPRIVVFTGFRGCGKSSLCRSAVRKEG----M-PAVFVDVR---GTE 323 (550)
T ss_pred cCCCCCccCCCCcHHHHHHHHHHHhccCC---CCceEEEEECCCCCCHHHHHHHHHhcCC----c-eEEEECCC---CHH
Confidence 34455677999999999999999975442 2456999999999999999999986322 1 12222222 679
Q ss_pred HHHHHHHHHcCCCCCCCccHHHHHHHHHHHH-----h-CCceEEEEeCCCCCC-ccChHHHHHhhcCCCCCcEEEEEcCC
Q 047321 177 SVAKAIIEGLGVSAFGLSEFESLMKQIQEYI-----T-GKKIFLVLDDVWDGD-YKKWDPFFSCLKNGHHESKILITTHD 249 (807)
Q Consensus 177 ~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l-----~-~k~~LlVlDdv~~~~-~~~~~~l~~~l~~~~~gs~IliTTR~ 249 (807)
++++.|+.+++..... ...++...|.+.+ . |++.+||+-==...+ ...+.+. ..|.....-|.|++---.
T Consensus 324 ElLr~LL~ALGV~p~~--~k~dLLrqIqeaLl~~~~e~GrtPVLII~lreg~~l~rvyne~-v~la~drr~ch~v~evpl 400 (550)
T PTZ00202 324 DTLRSVVKALGVPNVE--ACGDLLDFISEACRRAKKMNGETPLLVLKLREGSSLQRVYNEV-VALACDRRLCHVVIEVPL 400 (550)
T ss_pred HHHHHHHHHcCCCCcc--cHHHHHHHHHHHHHHHHHhCCCCEEEEEEecCCCcHHHHHHHH-HHHHccchhheeeeeehH
Confidence 9999999999974322 2233434443332 3 677777765321111 1122221 123333445677765544
Q ss_pred HHHHHHh---CCCceEeCCCCChhhHHHHHHHH
Q 047321 250 RSVALQL---GSIDIIPVKELGEGECWLLFKQI 279 (807)
Q Consensus 250 ~~v~~~~---~~~~~~~l~~L~~~~~~~Lf~~~ 279 (807)
+.+.... .-.+.|-+++++.++|.++-.+.
T Consensus 401 eslt~~~~~lprldf~~vp~fsr~qaf~y~~h~ 433 (550)
T PTZ00202 401 ESLTIANTLLPRLDFYLVPNFSRSQAFAYTQHA 433 (550)
T ss_pred hhcchhcccCccceeEecCCCCHHHHHHHHhhc
Confidence 4332211 12457899999999998877654
No 47
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=98.53 E-value=1.5e-07 Score=92.17 Aligned_cols=47 Identities=26% Similarity=0.299 Sum_probs=32.2
Q ss_pred ccccccchHHHHHHHHhCCCCCCCCCceEEEEEccCCChHHHHHHHHHcC
Q 047321 105 GVCGRVDEKNELLSKLLCGSSEQQKGLDVISLVGLGGIGKTTLAQLAYNN 154 (807)
Q Consensus 105 ~~vGR~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 154 (807)
.||||+++++++...|.... ....+.+.|+|++|+|||+|++.++..
T Consensus 1 ~fvgR~~e~~~l~~~l~~~~---~~~~~~~ll~G~~G~GKT~ll~~~~~~ 47 (185)
T PF13191_consen 1 QFVGREEEIERLRDLLDAAQ---SGSPRNLLLTGESGSGKTSLLRALLDR 47 (185)
T ss_dssp --TT-HHHHHHHHHTTGGTS---S-----EEE-B-TTSSHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHH---cCCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 48999999999999995222 456799999999999999999998874
No 48
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=98.52 E-value=2.6e-06 Score=96.54 Aligned_cols=196 Identities=15% Similarity=0.166 Sum_probs=116.8
Q ss_pred CccccccchHHHHHHHHhCCCCCCCCCceEEEEEccCCChHHHHHHHHHcCcccccccceEEEEEeCCCCCHHHHHHHHH
Q 047321 104 GGVCGRVDEKNELLSKLLCGSSEQQKGLDVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSNTFEEISVAKAII 183 (807)
Q Consensus 104 ~~~vGR~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 183 (807)
.++||.+..++.|..++..+. -...+.++|+.|+||||+|+.+.+.......++ +.....-...+.|.
T Consensus 16 dEVIGQe~Vv~~L~~aL~~gR-----L~HAyLFtGPpGvGKTTlAriLAKaLnCe~~~~-------~~PCG~C~sCr~I~ 83 (830)
T PRK07003 16 ASLVGQEHVVRALTHALDGGR-----LHHAYLFTGTRGVGKTTLSRIFAKALNCETGVT-------SQPCGVCRACREID 83 (830)
T ss_pred HHHcCcHHHHHHHHHHHhcCC-----CCeEEEEECCCCCCHHHHHHHHHHHhcCccCCC-------CCCCcccHHHHHHh
Confidence 469999999999999987432 345677999999999999998876321111000 00001111111111
Q ss_pred HH-----cCCCCCCCccHHHHHHHHHHH----HhCCceEEEEeCCCCCCccChHHHHHhhcCCCCCcEEEEEcCCHH-HH
Q 047321 184 EG-----LGVSAFGLSEFESLMKQIQEY----ITGKKIFLVLDDVWDGDYKKWDPFFSCLKNGHHESKILITTHDRS-VA 253 (807)
Q Consensus 184 ~~-----l~~~~~~~~~~~~~~~~l~~~----l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~IliTTR~~~-v~ 253 (807)
.. +..+.......+++.+.+... ..++.-++|+|++..-+...+..++..+.......++|+||.+.. +.
T Consensus 84 ~G~h~DviEIDAas~rgVDdIReLIe~a~~~P~~gr~KVIIIDEah~LT~~A~NALLKtLEEPP~~v~FILaTtd~~KIp 163 (830)
T PRK07003 84 EGRFVDYVEMDAASNRGVDEMAALLERAVYAPVDARFKVYMIDEVHMLTNHAFNAMLKTLEEPPPHVKFILATTDPQKIP 163 (830)
T ss_pred cCCCceEEEecccccccHHHHHHHHHHHHhccccCCceEEEEeChhhCCHHHHHHHHHHHHhcCCCeEEEEEECChhhcc
Confidence 10 000000011122222222211 134566899999977766778888888877666778888777653 22
Q ss_pred HHh-CCCceEeCCCCChhhHHHHHHHHHhccCCccCccchHHHHHHHHHHcCCCH-HHHHHHHH
Q 047321 254 LQL-GSIDIIPVKELGEGECWLLFKQIAFLRRSFEDCEKLEPIGRKIASKCKGLP-LAAKVIGN 315 (807)
Q Consensus 254 ~~~-~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~~~~I~~~c~glP-Lai~~~~~ 315 (807)
..+ .-...+.++.++.++..+.+.+.+-..+.. -..+..+.|++.++|.. -|+..+-.
T Consensus 164 ~TIrSRCq~f~Fk~Ls~eeIv~~L~~Il~~EgI~----id~eAL~lIA~~A~GsmRdALsLLdQ 223 (830)
T PRK07003 164 VTVLSRCLQFNLKQMPAGHIVSHLERILGEERIA----FEPQALRLLARAAQGSMRDALSLTDQ 223 (830)
T ss_pred chhhhheEEEecCCcCHHHHHHHHHHHHHHcCCC----CCHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 121 224689999999999999998876443321 12456788999999865 45555433
No 49
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=98.51 E-value=3.1e-06 Score=91.59 Aligned_cols=196 Identities=15% Similarity=0.092 Sum_probs=110.9
Q ss_pred CccccccchHHHHHHHHhCCCCCCCCCceEEEEEccCCChHHHHHHHHHcCcccccccc-eEEEEEeCCCCCHHHHHHHH
Q 047321 104 GGVCGRVDEKNELLSKLLCGSSEQQKGLDVISLVGLGGIGKTTLAQLAYNNDEVKRNFE-KVIWVCVSNTFEEISVAKAI 182 (807)
Q Consensus 104 ~~~vGR~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~-~~~wv~~~~~~~~~~~~~~i 182 (807)
.+++|++..++.+..++.. +..+.+.++|+.|+||||+|+.+.+... ...+. ..+.+++++..+. ....+
T Consensus 15 ~~~~g~~~~~~~L~~~~~~------~~~~~lll~Gp~GtGKT~la~~~~~~l~-~~~~~~~~~~i~~~~~~~~--~~~~~ 85 (337)
T PRK12402 15 EDILGQDEVVERLSRAVDS------PNLPHLLVQGPPGSGKTAAVRALARELY-GDPWENNFTEFNVADFFDQ--GKKYL 85 (337)
T ss_pred HHhcCCHHHHHHHHHHHhC------CCCceEEEECCCCCCHHHHHHHHHHHhc-CcccccceEEechhhhhhc--chhhh
Confidence 4689999999999988863 2345688999999999999999876321 11111 1234443321100 00000
Q ss_pred H------HHcCCC-CCCCccHHHHHHHHHHHH-----hCCceEEEEeCCCCCCccChHHHHHhhcCCCCCcEEEEEcCCH
Q 047321 183 I------EGLGVS-AFGLSEFESLMKQIQEYI-----TGKKIFLVLDDVWDGDYKKWDPFFSCLKNGHHESKILITTHDR 250 (807)
Q Consensus 183 ~------~~l~~~-~~~~~~~~~~~~~l~~~l-----~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~IliTTR~~ 250 (807)
. ...+.. .......+.....+.... .+.+-+||+||+..-.......+...+......+++|+||.+.
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDe~~~l~~~~~~~L~~~le~~~~~~~~Il~~~~~ 165 (337)
T PRK12402 86 VEDPRFAHFLGTDKRIRSSKIDNFKHVLKEYASYRPLSADYKTILLDNAEALREDAQQALRRIMEQYSRTCRFIIATRQP 165 (337)
T ss_pred hcCcchhhhhhhhhhhccchHHHHHHHHHHHHhcCCCCCCCcEEEEeCcccCCHHHHHHHHHHHHhccCCCeEEEEeCCh
Confidence 0 000000 000011121222122211 2345689999996544334445666665555567788777543
Q ss_pred H-HHHHhC-CCceEeCCCCChhhHHHHHHHHHhccCCccCccchHHHHHHHHHHcCCCHHHHHH
Q 047321 251 S-VALQLG-SIDIIPVKELGEGECWLLFKQIAFLRRSFEDCEKLEPIGRKIASKCKGLPLAAKV 312 (807)
Q Consensus 251 ~-v~~~~~-~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~~~~I~~~c~glPLai~~ 312 (807)
. +...+. ....+++.+++.++...++.+.+...+.. --.+.+..+++.++|.+-.+..
T Consensus 166 ~~~~~~L~sr~~~v~~~~~~~~~~~~~l~~~~~~~~~~----~~~~al~~l~~~~~gdlr~l~~ 225 (337)
T PRK12402 166 SKLIPPIRSRCLPLFFRAPTDDELVDVLESIAEAEGVD----YDDDGLELIAYYAGGDLRKAIL 225 (337)
T ss_pred hhCchhhcCCceEEEecCCCHHHHHHHHHHHHHHcCCC----CCHHHHHHHHHHcCCCHHHHHH
Confidence 2 222222 23578899999999999998876443321 2245678899999998765543
No 50
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.51 E-value=2.7e-06 Score=98.26 Aligned_cols=194 Identities=16% Similarity=0.170 Sum_probs=116.2
Q ss_pred CccccccchHHHHHHHHhCCCCCCCCCceEEEEEccCCChHHHHHHHHHcCcccccccceEEEEEeCCCCCHHHHHHHHH
Q 047321 104 GGVCGRVDEKNELLSKLLCGSSEQQKGLDVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSNTFEEISVAKAII 183 (807)
Q Consensus 104 ~~~vGR~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 183 (807)
.++||.+..++.|..++..+. -...+.++|+.|+||||+|+.+++........... ....-.....|.
T Consensus 16 ddIIGQe~Iv~~LknaI~~~r-----l~HAyLFtGPpGtGKTTLARiLAk~Lnce~~~~~~-------pCg~C~sC~~i~ 83 (944)
T PRK14949 16 EQMVGQSHVLHALTNALTQQR-----LHHAYLFTGTRGVGKTSLARLFAKGLNCEQGVTAT-------PCGVCSSCVEIA 83 (944)
T ss_pred HHhcCcHHHHHHHHHHHHhCC-----CCeEEEEECCCCCCHHHHHHHHHHhccCccCCCCC-------CCCCchHHHHHh
Confidence 469999999999998887422 34556899999999999999998632111100000 000000000111
Q ss_pred HH-------cCCC-CCCCccHHHHHHHHHH-HHhCCceEEEEeCCCCCCccChHHHHHhhcCCCCCcEEEEEcCC-HHHH
Q 047321 184 EG-------LGVS-AFGLSEFESLMKQIQE-YITGKKIFLVLDDVWDGDYKKWDPFFSCLKNGHHESKILITTHD-RSVA 253 (807)
Q Consensus 184 ~~-------l~~~-~~~~~~~~~~~~~l~~-~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~IliTTR~-~~v~ 253 (807)
.. +... ..+..++..+...+.. -..+++-++|+|++..-....+..++..+-......++|++|.+ ..+.
T Consensus 84 ~g~~~DviEidAas~~kVDdIReLie~v~~~P~~gk~KViIIDEAh~LT~eAqNALLKtLEEPP~~vrFILaTTe~~kLl 163 (944)
T PRK14949 84 QGRFVDLIEVDAASRTKVDDTRELLDNVQYRPSRGRFKVYLIDEVHMLSRSSFNALLKTLEEPPEHVKFLLATTDPQKLP 163 (944)
T ss_pred cCCCceEEEeccccccCHHHHHHHHHHHHhhhhcCCcEEEEEechHhcCHHHHHHHHHHHhccCCCeEEEEECCCchhch
Confidence 00 0000 0111122222222221 12467889999999877777778888888776666666666555 3333
Q ss_pred HH-hCCCceEeCCCCChhhHHHHHHHHHhccCCccCccchHHHHHHHHHHcCCCHHHHHHH
Q 047321 254 LQ-LGSIDIIPVKELGEGECWLLFKQIAFLRRSFEDCEKLEPIGRKIASKCKGLPLAAKVI 313 (807)
Q Consensus 254 ~~-~~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~~~~I~~~c~glPLai~~~ 313 (807)
.. ..-...|.+++++.++....+.+.+-..+. .--.+.+..|++.++|.|--+..+
T Consensus 164 ~TIlSRCq~f~fkpLs~eEI~~~L~~il~~EgI----~~edeAL~lIA~~S~Gd~R~ALnL 220 (944)
T PRK14949 164 VTVLSRCLQFNLKSLTQDEIGTQLNHILTQEQL----PFEAEALTLLAKAANGSMRDALSL 220 (944)
T ss_pred HHHHHhheEEeCCCCCHHHHHHHHHHHHHHcCC----CCCHHHHHHHHHHcCCCHHHHHHH
Confidence 22 222468999999999999999887643221 122456788999999988644433
No 51
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.48 E-value=4e-06 Score=94.07 Aligned_cols=192 Identities=18% Similarity=0.165 Sum_probs=115.8
Q ss_pred CccccccchHHHHHHHHhCCCCCCCCCceEEEEEccCCChHHHHHHHHHcCcccccccceEEEEEeCCCCCHHHHHHHHH
Q 047321 104 GGVCGRVDEKNELLSKLLCGSSEQQKGLDVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSNTFEEISVAKAII 183 (807)
Q Consensus 104 ~~~vGR~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 183 (807)
.++||.+..++.|..++..+. -...+.++|+.|+||||+|+.+++...... ++.. .....-...+.|.
T Consensus 15 ddVIGQe~vv~~L~~aI~~gr-----l~HAyLF~GPpGvGKTTlAriLAK~LnC~~------~~~~-~pCg~C~sC~~I~ 82 (702)
T PRK14960 15 NELVGQNHVSRALSSALERGR-----LHHAYLFTGTRGVGKTTIARILAKCLNCET------GVTS-TPCEVCATCKAVN 82 (702)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHHhCCCc------CCCC-CCCccCHHHHHHh
Confidence 469999999999999987432 357889999999999999999876311110 1100 0000011111111
Q ss_pred HHcCC-----CCCCCccHHHHHHHHHH----HHhCCceEEEEeCCCCCCccChHHHHHhhcCCCCCcEEEEEcCCHH-HH
Q 047321 184 EGLGV-----SAFGLSEFESLMKQIQE----YITGKKIFLVLDDVWDGDYKKWDPFFSCLKNGHHESKILITTHDRS-VA 253 (807)
Q Consensus 184 ~~l~~-----~~~~~~~~~~~~~~l~~----~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~IliTTR~~~-v~ 253 (807)
..-.. ........++..+.+.. -..+++-++|+|++..-+......+...+.....+.++|++|.+.. +.
T Consensus 83 ~g~hpDviEIDAAs~~~VddIReli~~~~y~P~~gk~KV~IIDEVh~LS~~A~NALLKtLEEPP~~v~FILaTtd~~kIp 162 (702)
T PRK14960 83 EGRFIDLIEIDAASRTKVEDTRELLDNVPYAPTQGRFKVYLIDEVHMLSTHSFNALLKTLEEPPEHVKFLFATTDPQKLP 162 (702)
T ss_pred cCCCCceEEecccccCCHHHHHHHHHHHhhhhhcCCcEEEEEechHhcCHHHHHHHHHHHhcCCCCcEEEEEECChHhhh
Confidence 10000 00001122222221111 1236677999999977666677778888877666677777776632 22
Q ss_pred HH-hCCCceEeCCCCChhhHHHHHHHHHhccCCccCccchHHHHHHHHHHcCCCHHHHH
Q 047321 254 LQ-LGSIDIIPVKELGEGECWLLFKQIAFLRRSFEDCEKLEPIGRKIASKCKGLPLAAK 311 (807)
Q Consensus 254 ~~-~~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~~~~I~~~c~glPLai~ 311 (807)
.. ......+++++++.++....+.+.+-..+.. --.+....|++.++|.+-.+.
T Consensus 163 ~TIlSRCq~feFkpLs~eEI~k~L~~Il~kEgI~----id~eAL~~IA~~S~GdLRdAL 217 (702)
T PRK14960 163 ITVISRCLQFTLRPLAVDEITKHLGAILEKEQIA----ADQDAIWQIAESAQGSLRDAL 217 (702)
T ss_pred HHHHHhhheeeccCCCHHHHHHHHHHHHHHcCCC----CCHHHHHHHHHHcCCCHHHHH
Confidence 11 2335689999999999999998877543321 224567889999999885544
No 52
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=98.48 E-value=1.3e-08 Score=104.01 Aligned_cols=278 Identities=18% Similarity=0.157 Sum_probs=151.5
Q ss_pred cCCcceEEEEEeeccCCCCc-cccCCCCceeEEEeCCCCCCCCCCCCccc-cccccCcccceeeecc--ccCCccCeeEe
Q 047321 464 SFGDKVRHLGLKFEEGASFP-MSIHGLNRLRTLLIYDQSPYNPSLSSSIL-PELFNKLACLRALVIR--QSLRTLEKFVV 539 (807)
Q Consensus 464 ~~~~~~r~L~l~~~~~~~~~-~~~~~l~~Lr~L~l~~~~~~~l~~~i~~L-P~~i~~L~~L~~LdL~--~~L~~L~~l~~ 539 (807)
..|..+..+.+..|.++.+| ..|+.+++||.|+|++| .|+.+ |+.+..|..|-.|-+. ++++.|+.
T Consensus 64 ~LP~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N-------~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k--- 133 (498)
T KOG4237|consen 64 NLPPETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKN-------NISFIAPDAFKGLASLLSLVLYGNNKITDLPK--- 133 (498)
T ss_pred cCCCcceEEEeccCCcccCChhhccchhhhceeccccc-------chhhcChHhhhhhHhhhHHHhhcCCchhhhhh---
Confidence 45788889999999998866 57889999999999998 77777 8888888887666554 23333332
Q ss_pred cCccCCCccccccccccccccCcccccCCCCCCChhHHHHhhccCCCCCCeEEEEeeccCCCcchhhhhchhhHHHHHHh
Q 047321 540 GGGVDGSNTCRLESLKNLQLLRECGIEGLGNVSHLDEAERLQLYNQQNLLRLRLRFGRVVDGEDEERRRKNEKDKQLLEA 619 (807)
Q Consensus 540 ~~~~~~~~~~~i~~L~~L~~L~~L~i~~l~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~ 619 (807)
.. ++.|..|+.|.++- ..+.-.....+..+++|..|.+..|.+-.+..+
T Consensus 134 ---------~~---F~gL~slqrLllNa----n~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~--------------- 182 (498)
T KOG4237|consen 134 ---------GA---FGGLSSLQRLLLNA----NHINCIRQDALRDLPSLSLLSLYDNKIQSICKG--------------- 182 (498)
T ss_pred ---------hH---hhhHHHHHHHhcCh----hhhcchhHHHHHHhhhcchhcccchhhhhhccc---------------
Confidence 01 22233333333222 111222333466677777777766542110000
Q ss_pred hcCCCCCCCCCCCcc-cceEeccCCcCcee------------eCcccCCCC---CCCCCCCCCCCCCCccccCcccccc-
Q 047321 620 LQPPLSHLPPLGKLP-LKKLELRDLESVKR------------VGNEFLGIE---ESSEDDPSSSSSSPSVIAFPKLKSL- 682 (807)
Q Consensus 620 l~p~~~~lp~l~~L~-L~~L~L~~~~~l~~------------i~~~~~~~~---~l~~~~~~~~~~~~~~~~l~~L~~L- 682 (807)
.+..+. ++.+.+...+.+-. .+.++.+.. ...+.+........ -....+++.+
T Consensus 183 ---------tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgarc~~p~rl~~~Ri~q~~a-~kf~c~~esl~ 252 (498)
T KOG4237|consen 183 ---------TFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGARCVSPYRLYYKRINQEDA-RKFLCSLESLP 252 (498)
T ss_pred ---------cccchhccchHhhhcCccccccccchhhhHHhhchhhcccceecchHHHHHHHhcccch-hhhhhhHHhHH
Confidence 011222 33333322111000 000000000 00000000000000 0011112222
Q ss_pred --cccCCCccccchhhhccccCCCCCCcccEEEEccCCCCCCC-cccccCCCCccEEeeccCcccccccccccccCCCCC
Q 047321 683 --EIDGMKELEEWNYRITRKENISIMPRLSSLQIMNCRKLKAL-PDYLLQTIALQKLSIYSCDLLEELPILEDRRTTDIP 759 (807)
Q Consensus 683 --~l~~~~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~l-p~~l~~l~~L~~L~l~~c~~l~~lP~~~~~~~~~l~ 759 (807)
-.+.|.-....|. .-+..+|+|+.|+++++ +++.+ +.++..+..|++|.+.. ++++.+. ...+.++.
T Consensus 253 s~~~~~d~~d~~cP~-----~cf~~L~~L~~lnlsnN-~i~~i~~~aFe~~a~l~eL~L~~-N~l~~v~---~~~f~~ls 322 (498)
T KOG4237|consen 253 SRLSSEDFPDSICPA-----KCFKKLPNLRKLNLSNN-KITRIEDGAFEGAAELQELYLTR-NKLEFVS---SGMFQGLS 322 (498)
T ss_pred HhhccccCcCCcChH-----HHHhhcccceEeccCCC-ccchhhhhhhcchhhhhhhhcCc-chHHHHH---HHhhhccc
Confidence 0111111111111 12456899999999988 77777 45677888999999988 4677653 24567888
Q ss_pred CCCeeeeccCCCcccCCccCCCCCcccccccccchhhhhhhhh
Q 047321 760 RLSSLAIWYCPKLKVLPDYLLRTTTLQAGEQDYENEKFSQRIA 802 (807)
Q Consensus 760 ~L~~L~i~~c~~l~~lP~~l~~l~~L~~L~l~~~~~~~~~~~~ 802 (807)
.|+.|+++++.--..-|..++.+.+|..|++-.|++-..=.++
T Consensus 323 ~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~~CnC~l~ 365 (498)
T KOG4237|consen 323 GLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPFNCNCRLA 365 (498)
T ss_pred cceeeeecCCeeEEEecccccccceeeeeehccCcccCccchH
Confidence 9999999985544445788899999999999888776554433
No 53
>PRK08727 hypothetical protein; Validated
Probab=98.47 E-value=7.2e-06 Score=83.03 Aligned_cols=149 Identities=15% Similarity=0.088 Sum_probs=91.1
Q ss_pred ceEEEEEccCCChHHHHHHHHHcCcccccccceEEEEEeCCCCCHHHHHHHHHHHcCCCCCCCccHHHHHHHHHHHHhCC
Q 047321 131 LDVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSNTFEEISVAKAIIEGLGVSAFGLSEFESLMKQIQEYITGK 210 (807)
Q Consensus 131 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k 210 (807)
...+.|+|+.|+|||+|++.+++. .......+.|+++.+ ....+. ..+ +.+ .+
T Consensus 41 ~~~l~l~G~~G~GKThL~~a~~~~--~~~~~~~~~y~~~~~------~~~~~~-----------------~~~-~~l-~~ 93 (233)
T PRK08727 41 SDWLYLSGPAGTGKTHLALALCAA--AEQAGRSSAYLPLQA------AAGRLR-----------------DAL-EAL-EG 93 (233)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH--HHHcCCcEEEEeHHH------hhhhHH-----------------HHH-HHH-hc
Confidence 356999999999999999999873 222223455665322 111100 111 111 23
Q ss_pred ceEEEEeCCCCCC-ccChHH-HHHhhcCC-CCCcEEEEEcCCH---------HHHHHhCCCceEeCCCCChhhHHHHHHH
Q 047321 211 KIFLVLDDVWDGD-YKKWDP-FFSCLKNG-HHESKILITTHDR---------SVALQLGSIDIIPVKELGEGECWLLFKQ 278 (807)
Q Consensus 211 ~~LlVlDdv~~~~-~~~~~~-l~~~l~~~-~~gs~IliTTR~~---------~v~~~~~~~~~~~l~~L~~~~~~~Lf~~ 278 (807)
..+||+||+.... ...|.. +...+... ..|..||+|++.. ++...+.....+++++++.++-.+++.+
T Consensus 94 ~dlLiIDDi~~l~~~~~~~~~lf~l~n~~~~~~~~vI~ts~~~p~~l~~~~~dL~SRl~~~~~~~l~~~~~e~~~~iL~~ 173 (233)
T PRK08727 94 RSLVALDGLESIAGQREDEVALFDFHNRARAAGITLLYTARQMPDGLALVLPDLRSRLAQCIRIGLPVLDDVARAAVLRE 173 (233)
T ss_pred CCEEEEeCcccccCChHHHHHHHHHHHHHHHcCCeEEEECCCChhhhhhhhHHHHHHHhcCceEEecCCCHHHHHHHHHH
Confidence 4699999995431 223443 44433322 3456699999852 2233334456899999999999999998
Q ss_pred HHhccCCccCccchHHHHHHHHHHcCCCHHHH
Q 047321 279 IAFLRRSFEDCEKLEPIGRKIASKCKGLPLAA 310 (807)
Q Consensus 279 ~a~~~~~~~~~~~~~~~~~~I~~~c~glPLai 310 (807)
++...+- .--.++...|++.++|-.-.+
T Consensus 174 ~a~~~~l----~l~~e~~~~La~~~~rd~r~~ 201 (233)
T PRK08727 174 RAQRRGL----ALDEAAIDWLLTHGERELAGL 201 (233)
T ss_pred HHHHcCC----CCCHHHHHHHHHhCCCCHHHH
Confidence 7754322 122456788899998766554
No 54
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=98.46 E-value=3.5e-06 Score=97.05 Aligned_cols=202 Identities=19% Similarity=0.164 Sum_probs=122.6
Q ss_pred CccccccchHHHHHHHHhCCCCCCCCCceEEEEEccCCChHHHHHHHHHcCccccccc---ceEEEEEeCCC---CCHHH
Q 047321 104 GGVCGRVDEKNELLSKLLCGSSEQQKGLDVISLVGLGGIGKTTLAQLAYNNDEVKRNF---EKVIWVCVSNT---FEEIS 177 (807)
Q Consensus 104 ~~~vGR~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f---~~~~wv~~~~~---~~~~~ 177 (807)
++++|++..++.+.+.+.. .....+.|+|++|+||||+|+.+++.......+ ...-|+.+... .+...
T Consensus 154 ~~iiGqs~~~~~l~~~ia~------~~~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~~~~fv~i~~~~l~~d~~~ 227 (615)
T TIGR02903 154 SEIVGQERAIKALLAKVAS------PFPQHIILYGPPGVGKTTAARLALEEAKKLKHTPFAEDAPFVEVDGTTLRWDPRE 227 (615)
T ss_pred HhceeCcHHHHHHHHHHhc------CCCCeEEEECCCCCCHHHHHHHHHHhhhhccCCcccCCCCeEEEechhccCCHHH
Confidence 4689999999998888753 234579999999999999999998754322222 12234444321 12222
Q ss_pred HHH---------------HHHHHcCCC------------------CCCCccHHHHHHHHHHHHhCCceEEEEeCCCCCCc
Q 047321 178 VAK---------------AIIEGLGVS------------------AFGLSEFESLMKQIQEYITGKKIFLVLDDVWDGDY 224 (807)
Q Consensus 178 ~~~---------------~i~~~l~~~------------------~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~ 224 (807)
+.. ..++..+.. ..+..+ ...+..+.+.+.++++.++-|+.|..+.
T Consensus 228 i~~~llg~~~~~~~~~a~~~l~~~gl~~~~~g~v~~asgGvL~LDEi~~Ld-~~~Q~~Ll~~Le~~~v~~~~~~~~~~~~ 306 (615)
T TIGR02903 228 VTNPLLGSVHDPIYQGARRDLAETGVPEPKTGLVTDAHGGVLFIDEIGELD-PLLQNKLLKVLEDKRVEFSSSYYDPDDP 306 (615)
T ss_pred HhHHhcCCccHHHHHHHHHHHHHcCCCchhcCchhhcCCCeEEEeccccCC-HHHHHHHHHHHhhCeEEeecceeccCCc
Confidence 111 111111110 001111 2346778888888999999888887777
Q ss_pred cChHHHHHhhcCCCCCcEEEE--EcCCHHH-HHHh-CCCceEeCCCCChhhHHHHHHHHHhccCCccCccchHHHHHHHH
Q 047321 225 KKWDPFFSCLKNGHHESKILI--TTHDRSV-ALQL-GSIDIIPVKELGEGECWLLFKQIAFLRRSFEDCEKLEPIGRKIA 300 (807)
Q Consensus 225 ~~~~~l~~~l~~~~~gs~Ili--TTR~~~v-~~~~-~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~~~~I~ 300 (807)
..|+.+...+....+...|+| ||++... ...+ .....+.+.+++.+|.+.++.+.+-..+. .. -.++...|+
T Consensus 307 ~~~~~ik~~~~~~~~~~~VLI~aTt~~~~~l~~aLrSR~~~i~~~pls~edi~~Il~~~a~~~~v-~l---s~eal~~L~ 382 (615)
T TIGR02903 307 NVPKYIKKLFEEGAPADFVLIGATTRDPEEINPALRSRCAEVFFEPLTPEDIALIVLNAAEKINV-HL---AAGVEELIA 382 (615)
T ss_pred ccchhhhhhcccCccceEEEEEeccccccccCHHHHhceeEEEeCCCCHHHHHHHHHHHHHHcCC-CC---CHHHHHHHH
Confidence 788888877776666555555 5665431 1111 12346789999999999999987643211 11 134556666
Q ss_pred HHcCCCHHHHHHHHHH
Q 047321 301 SKCKGLPLAAKVIGNL 316 (807)
Q Consensus 301 ~~c~glPLai~~~~~~ 316 (807)
+.+..-+-|+..++..
T Consensus 383 ~ys~~gRraln~L~~~ 398 (615)
T TIGR02903 383 RYTIEGRKAVNILADV 398 (615)
T ss_pred HCCCcHHHHHHHHHHH
Confidence 6665556666666544
No 55
>PF13173 AAA_14: AAA domain
Probab=98.45 E-value=9.6e-07 Score=80.44 Aligned_cols=119 Identities=21% Similarity=0.302 Sum_probs=77.2
Q ss_pred ceEEEEEccCCChHHHHHHHHHcCcccccccceEEEEEeCCCCCHHHHHHHHHHHcCCCCCCCccHHHHHHHHHHHHhCC
Q 047321 131 LDVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSNTFEEISVAKAIIEGLGVSAFGLSEFESLMKQIQEYITGK 210 (807)
Q Consensus 131 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k 210 (807)
.+++.|.|+-|+||||+++.++.+.. ....++++++.+....... ..+ ..+.+.+....+
T Consensus 2 ~~~~~l~G~R~vGKTtll~~~~~~~~---~~~~~~yi~~~~~~~~~~~----------------~~~-~~~~~~~~~~~~ 61 (128)
T PF13173_consen 2 RKIIILTGPRGVGKTTLLKQLAKDLL---PPENILYINFDDPRDRRLA----------------DPD-LLEYFLELIKPG 61 (128)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhc---ccccceeeccCCHHHHHHh----------------hhh-hHHHHHHhhccC
Confidence 46899999999999999999987422 2234566655443221100 000 222333333347
Q ss_pred ceEEEEeCCCCCCccChHHHHHhhcCCCCCcEEEEEcCCHHHHHHh------CCCceEeCCCCChhh
Q 047321 211 KIFLVLDDVWDGDYKKWDPFFSCLKNGHHESKILITTHDRSVALQL------GSIDIIPVKELGEGE 271 (807)
Q Consensus 211 ~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~IliTTR~~~v~~~~------~~~~~~~l~~L~~~~ 271 (807)
+.++++|++.. ...|......+.+..+..+|++|+.+......- +....+++.||+..|
T Consensus 62 ~~~i~iDEiq~--~~~~~~~lk~l~d~~~~~~ii~tgS~~~~l~~~~~~~l~gr~~~~~l~Plsf~E 126 (128)
T PF13173_consen 62 KKYIFIDEIQY--LPDWEDALKFLVDNGPNIKIILTGSSSSLLSKDIAESLAGRVIEIELYPLSFRE 126 (128)
T ss_pred CcEEEEehhhh--hccHHHHHHHHHHhccCceEEEEccchHHHhhcccccCCCeEEEEEECCCCHHH
Confidence 78899999965 457888777776666677899999987665331 113467889998776
No 56
>PLN03025 replication factor C subunit; Provisional
Probab=98.45 E-value=3.4e-06 Score=89.93 Aligned_cols=182 Identities=13% Similarity=0.074 Sum_probs=107.0
Q ss_pred CccccccchHHHHHHHHhCCCCCCCCCceEEEEEccCCChHHHHHHHHHcCcccccccc-eEEEEEeCCCCCHHHHHHHH
Q 047321 104 GGVCGRVDEKNELLSKLLCGSSEQQKGLDVISLVGLGGIGKTTLAQLAYNNDEVKRNFE-KVIWVCVSNTFEEISVAKAI 182 (807)
Q Consensus 104 ~~~vGR~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~-~~~wv~~~~~~~~~~~~~~i 182 (807)
.+++|.++.++.|..++.. ++.+.+.++|++|+||||+|+.+++... ...|. .++-++.++..... ..+.+
T Consensus 13 ~~~~g~~~~~~~L~~~~~~------~~~~~lll~Gp~G~GKTtla~~la~~l~-~~~~~~~~~eln~sd~~~~~-~vr~~ 84 (319)
T PLN03025 13 DDIVGNEDAVSRLQVIARD------GNMPNLILSGPPGTGKTTSILALAHELL-GPNYKEAVLELNASDDRGID-VVRNK 84 (319)
T ss_pred HHhcCcHHHHHHHHHHHhc------CCCceEEEECCCCCCHHHHHHHHHHHHh-cccCccceeeecccccccHH-HHHHH
Confidence 3688998888888877753 2345578999999999999999887311 11221 11112222222211 12222
Q ss_pred HHHcCCCCCCCccHHHHHHHHHHHHhCCceEEEEeCCCCCCccChHHHHHhhcCCCCCcEEEEEcCCH-HHHHHh-CCCc
Q 047321 183 IEGLGVSAFGLSEFESLMKQIQEYITGKKIFLVLDDVWDGDYKKWDPFFSCLKNGHHESKILITTHDR-SVALQL-GSID 260 (807)
Q Consensus 183 ~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~IliTTR~~-~v~~~~-~~~~ 260 (807)
++.+...... .-.++.-++|+||+..-.......+...+......+++|+++... .+...+ ....
T Consensus 85 i~~~~~~~~~-------------~~~~~~kviiiDE~d~lt~~aq~aL~~~lE~~~~~t~~il~~n~~~~i~~~L~SRc~ 151 (319)
T PLN03025 85 IKMFAQKKVT-------------LPPGRHKIVILDEADSMTSGAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQSRCA 151 (319)
T ss_pred HHHHHhcccc-------------CCCCCeEEEEEechhhcCHHHHHHHHHHHhcccCCceEEEEeCCccccchhHHHhhh
Confidence 2211100000 002456799999997655445555666665545567777776542 221111 1135
Q ss_pred eEeCCCCChhhHHHHHHHHHhccCCccCccchHHHHHHHHHHcCCCHHHH
Q 047321 261 IIPVKELGEGECWLLFKQIAFLRRSFEDCEKLEPIGRKIASKCKGLPLAA 310 (807)
Q Consensus 261 ~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~~~~I~~~c~glPLai 310 (807)
.++++++++++....+...+-..+-. . -.+....|++.++|-.-.+
T Consensus 152 ~i~f~~l~~~~l~~~L~~i~~~egi~-i---~~~~l~~i~~~~~gDlR~a 197 (319)
T PLN03025 152 IVRFSRLSDQEILGRLMKVVEAEKVP-Y---VPEGLEAIIFTADGDMRQA 197 (319)
T ss_pred cccCCCCCHHHHHHHHHHHHHHcCCC-C---CHHHHHHHHHHcCCCHHHH
Confidence 78999999999999998887543321 1 1456788999999876443
No 57
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=98.45 E-value=6.1e-06 Score=91.94 Aligned_cols=194 Identities=15% Similarity=0.123 Sum_probs=114.9
Q ss_pred CccccccchHHHHHHHHhCCCCCCCCCceEEEEEccCCChHHHHHHHHHcCcccccccce-EEEEEeCCCCCHHHHHHHH
Q 047321 104 GGVCGRVDEKNELLSKLLCGSSEQQKGLDVISLVGLGGIGKTTLAQLAYNNDEVKRNFEK-VIWVCVSNTFEEISVAKAI 182 (807)
Q Consensus 104 ~~~vGR~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~-~~wv~~~~~~~~~~~~~~i 182 (807)
.+++|-+..++.|...+..+ .-...+.++|+.|+||||+|+.+++.......... ..+..+... .....+
T Consensus 21 ~dliGq~~vv~~L~~ai~~~-----ri~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~~~~~~~~~~~~C~~C----~~C~~i 91 (507)
T PRK06645 21 AELQGQEVLVKVLSYTILND-----RLAGGYLLTGIRGVGKTTSARIIAKAVNCSALITENTTIKTCEQC----TNCISF 91 (507)
T ss_pred HHhcCcHHHHHHHHHHHHcC-----CCCceEEEECCCCCCHHHHHHHHHHHhcCccccccCcCcCCCCCC----hHHHHH
Confidence 36899999999888877642 23467899999999999999999763211110000 000000000 011111
Q ss_pred HHHcCC-----CCCCCccHHHHHHHHHHH----HhCCceEEEEeCCCCCCccChHHHHHhhcCCCCCcEEEE-EcCCHHH
Q 047321 183 IEGLGV-----SAFGLSEFESLMKQIQEY----ITGKKIFLVLDDVWDGDYKKWDPFFSCLKNGHHESKILI-TTHDRSV 252 (807)
Q Consensus 183 ~~~l~~-----~~~~~~~~~~~~~~l~~~----l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~Ili-TTR~~~v 252 (807)
...... ........+++...+... +.+++-++|+||++.-....+..+...+......+.+|+ ||+...+
T Consensus 92 ~~~~h~Dv~eidaas~~~vd~Ir~iie~a~~~P~~~~~KVvIIDEa~~Ls~~a~naLLk~LEepp~~~vfI~aTte~~kI 171 (507)
T PRK06645 92 NNHNHPDIIEIDAASKTSVDDIRRIIESAEYKPLQGKHKIFIIDEVHMLSKGAFNALLKTLEEPPPHIIFIFATTEVQKI 171 (507)
T ss_pred hcCCCCcEEEeeccCCCCHHHHHHHHHHHHhccccCCcEEEEEEChhhcCHHHHHHHHHHHhhcCCCEEEEEEeCChHHh
Confidence 110000 000111222222222211 246778999999987767778888888876666666554 4454455
Q ss_pred HHHhC-CCceEeCCCCChhhHHHHHHHHHhccCCccCccchHHHHHHHHHHcCCCHHHH
Q 047321 253 ALQLG-SIDIIPVKELGEGECWLLFKQIAFLRRSFEDCEKLEPIGRKIASKCKGLPLAA 310 (807)
Q Consensus 253 ~~~~~-~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~~~~I~~~c~glPLai 310 (807)
...+. ....+++++++.++....+.+.+-..+.. -..+....|++.++|.+--+
T Consensus 172 ~~tI~SRc~~~ef~~ls~~el~~~L~~i~~~egi~----ie~eAL~~Ia~~s~GslR~a 226 (507)
T PRK06645 172 PATIISRCQRYDLRRLSFEEIFKLLEYITKQENLK----TDIEALRIIAYKSEGSARDA 226 (507)
T ss_pred hHHHHhcceEEEccCCCHHHHHHHHHHHHHHcCCC----CCHHHHHHHHHHcCCCHHHH
Confidence 44332 34579999999999999999888543321 12455688999999987544
No 58
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.44 E-value=3.9e-06 Score=93.90 Aligned_cols=199 Identities=14% Similarity=0.136 Sum_probs=115.0
Q ss_pred CccccccchHHHHHHHHhCCCCCCCCCceEEEEEccCCChHHHHHHHHHcCcccccccceEEEEEeCCCCCHHHHHHHHH
Q 047321 104 GGVCGRVDEKNELLSKLLCGSSEQQKGLDVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSNTFEEISVAKAII 183 (807)
Q Consensus 104 ~~~vGR~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 183 (807)
.++||.+..++.|.+.+..+. -...+.++|+.|+||||+|+.+.+...-... +..--+. +.....-...+.|.
T Consensus 16 ddVIGQe~vv~~L~~al~~gR-----LpHA~LFtGP~GvGKTTLAriLAkaLnC~~p-~~~~g~~-~~PCG~C~sC~~I~ 88 (700)
T PRK12323 16 TTLVGQEHVVRALTHALEQQR-----LHHAYLFTGTRGVGKTTLSRILAKSLNCTGA-DGEGGIT-AQPCGQCRACTEID 88 (700)
T ss_pred HHHcCcHHHHHHHHHHHHhCC-----CceEEEEECCCCCCHHHHHHHHHHHhcCCCc-cccccCC-CCCCcccHHHHHHH
Confidence 469999999999999997532 3466789999999999999998752111000 0000000 00000011111111
Q ss_pred HH-----cCCCCCCCccHHHHHHHHHHH----HhCCceEEEEeCCCCCCccChHHHHHhhcCCCCCcEEEEEcCC-HHHH
Q 047321 184 EG-----LGVSAFGLSEFESLMKQIQEY----ITGKKIFLVLDDVWDGDYKKWDPFFSCLKNGHHESKILITTHD-RSVA 253 (807)
Q Consensus 184 ~~-----l~~~~~~~~~~~~~~~~l~~~----l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~IliTTR~-~~v~ 253 (807)
.. +..+.......+++.+.+... ..++.-++|+|++..-+...+..++..+..-..++++|++|.+ ..+.
T Consensus 89 aG~hpDviEIdAas~~gVDdIReLie~~~~~P~~gr~KViIIDEah~Ls~~AaNALLKTLEEPP~~v~FILaTtep~kLl 168 (700)
T PRK12323 89 AGRFVDYIEMDAASNRGVDEMAQLLDKAVYAPTAGRFKVYMIDEVHMLTNHAFNAMLKTLEEPPEHVKFILATTDPQKIP 168 (700)
T ss_pred cCCCCcceEecccccCCHHHHHHHHHHHHhchhcCCceEEEEEChHhcCHHHHHHHHHhhccCCCCceEEEEeCChHhhh
Confidence 10 000000111223222222221 2466779999999877777777888887765556666555554 4443
Q ss_pred HHh-CCCceEeCCCCChhhHHHHHHHHHhccCCccCccchHHHHHHHHHHcCCCHHHHHHH
Q 047321 254 LQL-GSIDIIPVKELGEGECWLLFKQIAFLRRSFEDCEKLEPIGRKIASKCKGLPLAAKVI 313 (807)
Q Consensus 254 ~~~-~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~~~~I~~~c~glPLai~~~ 313 (807)
..+ .-...+.++.++.++..+.+.+.+-..+.. ...+..+.|++.++|.|..+..+
T Consensus 169 pTIrSRCq~f~f~~ls~eei~~~L~~Il~~Egi~----~d~eAL~~IA~~A~Gs~RdALsL 225 (700)
T PRK12323 169 VTVLSRCLQFNLKQMPPGHIVSHLDAILGEEGIA----HEVNALRLLAQAAQGSMRDALSL 225 (700)
T ss_pred hHHHHHHHhcccCCCChHHHHHHHHHHHHHcCCC----CCHHHHHHHHHHcCCCHHHHHHH
Confidence 222 224689999999999999988776433221 12345688999999999755433
No 59
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=98.43 E-value=7.5e-06 Score=87.80 Aligned_cols=181 Identities=13% Similarity=0.041 Sum_probs=107.2
Q ss_pred CccccccchHHHHHHHHhCCCCCCCCCceEEEEEccCCChHHHHHHHHHcCcccccccceEEEEEe--CCCCCHHHHHHH
Q 047321 104 GGVCGRVDEKNELLSKLLCGSSEQQKGLDVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCV--SNTFEEISVAKA 181 (807)
Q Consensus 104 ~~~vGR~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~--~~~~~~~~~~~~ 181 (807)
.+++|+++.++.+..++.. ...+.+.|+|+.|+||||+|+.+++... ...+.. .++.+ +...... ..+.
T Consensus 17 ~~~~g~~~~~~~l~~~i~~------~~~~~~ll~G~~G~GKt~~~~~l~~~l~-~~~~~~-~~i~~~~~~~~~~~-~~~~ 87 (319)
T PRK00440 17 DEIVGQEEIVERLKSYVKE------KNMPHLLFAGPPGTGKTTAALALARELY-GEDWRE-NFLELNASDERGID-VIRN 87 (319)
T ss_pred HHhcCcHHHHHHHHHHHhC------CCCCeEEEECCCCCCHHHHHHHHHHHHc-CCcccc-ceEEeccccccchH-HHHH
Confidence 4589999999999998863 2344579999999999999999987321 111211 12222 2221111 1111
Q ss_pred HHHHcCCCCCCCccHHHHHHHHHHHHhCCceEEEEeCCCCCCccChHHHHHhhcCCCCCcEEEEEcCCH-HHHHHh-CCC
Q 047321 182 IIEGLGVSAFGLSEFESLMKQIQEYITGKKIFLVLDDVWDGDYKKWDPFFSCLKNGHHESKILITTHDR-SVALQL-GSI 259 (807)
Q Consensus 182 i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~IliTTR~~-~v~~~~-~~~ 259 (807)
.+..+..... .....+-++++|++..-.......+...+......+++|+++... .+...+ ...
T Consensus 88 ~i~~~~~~~~--------------~~~~~~~vviiDe~~~l~~~~~~~L~~~le~~~~~~~lIl~~~~~~~l~~~l~sr~ 153 (319)
T PRK00440 88 KIKEFARTAP--------------VGGAPFKIIFLDEADNLTSDAQQALRRTMEMYSQNTRFILSCNYSSKIIDPIQSRC 153 (319)
T ss_pred HHHHHHhcCC--------------CCCCCceEEEEeCcccCCHHHHHHHHHHHhcCCCCCeEEEEeCCccccchhHHHHh
Confidence 1111100000 001345689999986544444556777666555566777776432 111111 123
Q ss_pred ceEeCCCCChhhHHHHHHHHHhccCCccCccchHHHHHHHHHHcCCCHHHHH
Q 047321 260 DIIPVKELGEGECWLLFKQIAFLRRSFEDCEKLEPIGRKIASKCKGLPLAAK 311 (807)
Q Consensus 260 ~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~~~~I~~~c~glPLai~ 311 (807)
..+++.+++.++....+...+-..+.. --.+.+..+++.++|.+--+.
T Consensus 154 ~~~~~~~l~~~ei~~~l~~~~~~~~~~----i~~~al~~l~~~~~gd~r~~~ 201 (319)
T PRK00440 154 AVFRFSPLKKEAVAERLRYIAENEGIE----ITDDALEAIYYVSEGDMRKAI 201 (319)
T ss_pred heeeeCCCCHHHHHHHHHHHHHHcCCC----CCHHHHHHHHHHcCCCHHHHH
Confidence 468999999999999988877543321 124567889999999886543
No 60
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=98.43 E-value=4.2e-07 Score=91.94 Aligned_cols=90 Identities=19% Similarity=0.146 Sum_probs=63.4
Q ss_pred CceEEEEEccCCChHHHHHHHHHcCcccccccceEEEEEeCCC--CCHHHHHHHHHHHcCCCCCCCccHH------HHHH
Q 047321 130 GLDVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSNT--FEEISVAKAIIEGLGVSAFGLSEFE------SLMK 201 (807)
Q Consensus 130 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~--~~~~~~~~~i~~~l~~~~~~~~~~~------~~~~ 201 (807)
....++|+|++|+|||||++.++++.... +|+.++|+.+... +++.++++.+...+-....+..... ....
T Consensus 15 ~Gqr~~I~G~~G~GKTTLlr~I~n~l~~~-~fdv~~~v~vI~er~~ev~el~~~I~~~~v~~~~~~~~~~~~~~~~~~~~ 93 (249)
T cd01128 15 KGQRGLIVAPPKAGKTTLLQSIANAITKN-HPEVYLIVLLIDERPEEVTDMQRSVKGEVIASTFDEPPERHVQVAEMVLE 93 (249)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhccccc-cCCeEEEEEEccCCCccHHHHHHHhccEEEEecCCCCHHHHHHHHHHHHH
Confidence 56789999999999999999999965444 8999999997776 7899999998443333222222111 1122
Q ss_pred HHHHH-HhCCceEEEEeCCC
Q 047321 202 QIQEY-ITGKKIFLVLDDVW 220 (807)
Q Consensus 202 ~l~~~-l~~k~~LlVlDdv~ 220 (807)
..... -.|++.++++|++.
T Consensus 94 ~a~~~~~~G~~vll~iDei~ 113 (249)
T cd01128 94 KAKRLVEHGKDVVILLDSIT 113 (249)
T ss_pred HHHHHHHCCCCEEEEEECHH
Confidence 22222 25899999999994
No 61
>PRK08084 DNA replication initiation factor; Provisional
Probab=98.40 E-value=1.1e-05 Score=81.93 Aligned_cols=154 Identities=18% Similarity=0.142 Sum_probs=93.7
Q ss_pred CceEEEEEccCCChHHHHHHHHHcCcccccccceEEEEEeCCCCCHHHHHHHHHHHcCCCCCCCccHHHHHHHHHHHHhC
Q 047321 130 GLDVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSNTFEEISVAKAIIEGLGVSAFGLSEFESLMKQIQEYITG 209 (807)
Q Consensus 130 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~ 209 (807)
..+.+.|+|+.|+|||+|++.+++. ....-..+.++.+..... ...+.. +.+.
T Consensus 44 ~~~~l~l~Gp~G~GKThLl~a~~~~--~~~~~~~v~y~~~~~~~~--------------------~~~~~~----~~~~- 96 (235)
T PRK08084 44 HSGYIYLWSREGAGRSHLLHAACAE--LSQRGRAVGYVPLDKRAW--------------------FVPEVL----EGME- 96 (235)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHH--HHhCCCeEEEEEHHHHhh--------------------hhHHHH----HHhh-
Confidence 3468899999999999999998873 222223345655432100 001111 1111
Q ss_pred CceEEEEeCCCCCC-ccChHH-HHHhhcCC-CCC-cEEEEEcCCH---------HHHHHhCCCceEeCCCCChhhHHHHH
Q 047321 210 KKIFLVLDDVWDGD-YKKWDP-FFSCLKNG-HHE-SKILITTHDR---------SVALQLGSIDIIPVKELGEGECWLLF 276 (807)
Q Consensus 210 k~~LlVlDdv~~~~-~~~~~~-l~~~l~~~-~~g-s~IliTTR~~---------~v~~~~~~~~~~~l~~L~~~~~~~Lf 276 (807)
+--+|++||+.... ...|+. +...+... ..| .++|+||+.. +....+....+++++++++++-.+++
T Consensus 97 ~~dlliiDdi~~~~~~~~~~~~lf~l~n~~~e~g~~~li~ts~~~p~~l~~~~~~L~SRl~~g~~~~l~~~~~~~~~~~l 176 (235)
T PRK08084 97 QLSLVCIDNIECIAGDELWEMAIFDLYNRILESGRTRLLITGDRPPRQLNLGLPDLASRLDWGQIYKLQPLSDEEKLQAL 176 (235)
T ss_pred hCCEEEEeChhhhcCCHHHHHHHHHHHHHHHHcCCCeEEEeCCCChHHcCcccHHHHHHHhCCceeeecCCCHHHHHHHH
Confidence 12488999995432 235554 33444322 233 3699998754 33444555578999999999999999
Q ss_pred HHHHhccCCccCccchHHHHHHHHHHcCCCHHHHHHHH
Q 047321 277 KQIAFLRRSFEDCEKLEPIGRKIASKCKGLPLAAKVIG 314 (807)
Q Consensus 277 ~~~a~~~~~~~~~~~~~~~~~~I~~~c~glPLai~~~~ 314 (807)
.+++...+- .--+++...|++.+.|..-++..+-
T Consensus 177 ~~~a~~~~~----~l~~~v~~~L~~~~~~d~r~l~~~l 210 (235)
T PRK08084 177 QLRARLRGF----ELPEDVGRFLLKRLDREMRTLFMTL 210 (235)
T ss_pred HHHHHHcCC----CCCHHHHHHHHHhhcCCHHHHHHHH
Confidence 887744321 1235678889999998766554433
No 62
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.39 E-value=1e-05 Score=89.84 Aligned_cols=187 Identities=17% Similarity=0.182 Sum_probs=109.3
Q ss_pred CccccccchHHHHHHHHhCCCCCCCCCceEEEEEccCCChHHHHHHHHHcCcccccc-------------------cceE
Q 047321 104 GGVCGRVDEKNELLSKLLCGSSEQQKGLDVISLVGLGGIGKTTLAQLAYNNDEVKRN-------------------FEKV 164 (807)
Q Consensus 104 ~~~vGR~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~-------------------f~~~ 164 (807)
.++||.+...+.|...+..+. -...+.++|+.|+||||+|+.+++....... +...
T Consensus 14 ~divGq~~i~~~L~~~i~~~~-----l~~~~Lf~GPpGtGKTTlA~~lA~~l~~~~~~~~~pc~~c~~c~~i~~g~~~dv 88 (472)
T PRK14962 14 SEVVGQDHVKKLIINALKKNS-----ISHAYIFAGPRGTGKTTVARILAKSLNCENRKGVEPCNECRACRSIDEGTFMDV 88 (472)
T ss_pred HHccCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCCCcccHHHHHHhcCCCCcc
Confidence 469999888888888776422 3356899999999999999999763211100 0011
Q ss_pred EEEEeCCCCCHHHHHHHHHHHcCCCCCCCccHHHHHHHHHH-HHhCCceEEEEeCCCCCCccChHHHHHhhcCCCCCcEE
Q 047321 165 IWVCVSNTFEEISVAKAIIEGLGVSAFGLSEFESLMKQIQE-YITGKKIFLVLDDVWDGDYKKWDPFFSCLKNGHHESKI 243 (807)
Q Consensus 165 ~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~-~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~I 243 (807)
..++.+..... .+...+...+.. -..+++-++|+|++..-.....+.+...+........+
T Consensus 89 ~el~aa~~~gi------------------d~iR~i~~~~~~~p~~~~~kVvIIDE~h~Lt~~a~~~LLk~LE~p~~~vv~ 150 (472)
T PRK14962 89 IELDAASNRGI------------------DEIRKIRDAVGYRPMEGKYKVYIIDEVHMLTKEAFNALLKTLEEPPSHVVF 150 (472)
T ss_pred EEEeCcccCCH------------------HHHHHHHHHHhhChhcCCeEEEEEEChHHhHHHHHHHHHHHHHhCCCcEEE
Confidence 11111111111 111111111111 12356779999999654444556676676654444444
Q ss_pred EEEcCC-HHHHHHhC-CCceEeCCCCChhhHHHHHHHHHhccCCccCccchHHHHHHHHHHcCC-CHHHHHHHHHHh
Q 047321 244 LITTHD-RSVALQLG-SIDIIPVKELGEGECWLLFKQIAFLRRSFEDCEKLEPIGRKIASKCKG-LPLAAKVIGNLL 317 (807)
Q Consensus 244 liTTR~-~~v~~~~~-~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~~~~I~~~c~g-lPLai~~~~~~l 317 (807)
|++|.+ ..+...+. ....+++.+++.++....+.+.+...+. .--.+....|++.++| ++.|+..+..+.
T Consensus 151 Ilattn~~kl~~~L~SR~~vv~f~~l~~~el~~~L~~i~~~egi----~i~~eal~~Ia~~s~GdlR~aln~Le~l~ 223 (472)
T PRK14962 151 VLATTNLEKVPPTIISRCQVIEFRNISDELIIKRLQEVAEAEGI----EIDREALSFIAKRASGGLRDALTMLEQVW 223 (472)
T ss_pred EEEeCChHhhhHHHhcCcEEEEECCccHHHHHHHHHHHHHHcCC----CCCHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 444444 34433332 3468899999999999998887744322 1124567888887765 567777776544
No 63
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.39 E-value=1.5e-06 Score=94.80 Aligned_cols=191 Identities=14% Similarity=0.117 Sum_probs=114.1
Q ss_pred CccccccchHHHHHHHHhCCCCCCCCCceEEEEEccCCChHHHHHHHHHcCcccccccceEEEEEeCCCCCHHHHHHHHH
Q 047321 104 GGVCGRVDEKNELLSKLLCGSSEQQKGLDVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSNTFEEISVAKAII 183 (807)
Q Consensus 104 ~~~vGR~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 183 (807)
.++||.+..+..|..++.... -...+.++|+.|+||||+|+.+++...-...... ..+..... ...+.
T Consensus 18 ~dvVGQe~iv~~L~~~i~~~r-----i~ha~Lf~GP~GtGKTTlAriLAk~Lnce~~~~~---~pCg~C~s----C~~i~ 85 (484)
T PRK14956 18 RDVIHQDLAIGALQNALKSGK-----IGHAYIFFGPRGVGKTTIARILAKRLNCENPIGN---EPCNECTS----CLEIT 85 (484)
T ss_pred HHHhChHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHhcCcccccCc---cccCCCcH----HHHHH
Confidence 468999999999988887422 2356899999999999999999873211110000 00111111 11121
Q ss_pred HHcCC--------CCCCCccHHHHHHHHHHH-HhCCceEEEEeCCCCCCccChHHHHHhhcCCCCCcEEEEEcCC-HHHH
Q 047321 184 EGLGV--------SAFGLSEFESLMKQIQEY-ITGKKIFLVLDDVWDGDYKKWDPFFSCLKNGHHESKILITTHD-RSVA 253 (807)
Q Consensus 184 ~~l~~--------~~~~~~~~~~~~~~l~~~-l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~IliTTR~-~~v~ 253 (807)
..... ...+..+..++.+.+... ..++.-++|+|++..-....+..++..+........+|++|.+ ..+.
T Consensus 86 ~g~~~dviEIdaas~~gVd~IReL~e~l~~~p~~g~~KV~IIDEah~Ls~~A~NALLKtLEEPp~~viFILaTte~~kI~ 165 (484)
T PRK14956 86 KGISSDVLEIDAASNRGIENIRELRDNVKFAPMGGKYKVYIIDEVHMLTDQSFNALLKTLEEPPAHIVFILATTEFHKIP 165 (484)
T ss_pred ccCCccceeechhhcccHHHHHHHHHHHHhhhhcCCCEEEEEechhhcCHHHHHHHHHHhhcCCCceEEEeecCChhhcc
Confidence 11110 011122223333333221 2456779999999877777788888877654445554544443 4443
Q ss_pred HHh-CCCceEeCCCCChhhHHHHHHHHHhccCCccCccchHHHHHHHHHHcCCCHHHH
Q 047321 254 LQL-GSIDIIPVKELGEGECWLLFKQIAFLRRSFEDCEKLEPIGRKIASKCKGLPLAA 310 (807)
Q Consensus 254 ~~~-~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~~~~I~~~c~glPLai 310 (807)
..+ .-...|.+.+++.++..+.+.+.+-..+. .--.+....|++.++|.+--+
T Consensus 166 ~TI~SRCq~~~f~~ls~~~i~~~L~~i~~~Egi----~~e~eAL~~Ia~~S~Gd~RdA 219 (484)
T PRK14956 166 ETILSRCQDFIFKKVPLSVLQDYSEKLCKIENV----QYDQEGLFWIAKKGDGSVRDM 219 (484)
T ss_pred HHHHhhhheeeecCCCHHHHHHHHHHHHHHcCC----CCCHHHHHHHHHHcCChHHHH
Confidence 332 22467999999999999998887644332 122456789999999998543
No 64
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.38 E-value=9.3e-06 Score=91.07 Aligned_cols=187 Identities=20% Similarity=0.237 Sum_probs=116.2
Q ss_pred CccccccchHHHHHHHHhCCCCCCCCCceEEEEEccCCChHHHHHHHHHcCcccc-------------------cccceE
Q 047321 104 GGVCGRVDEKNELLSKLLCGSSEQQKGLDVISLVGLGGIGKTTLAQLAYNNDEVK-------------------RNFEKV 164 (807)
Q Consensus 104 ~~~vGR~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~-------------------~~f~~~ 164 (807)
.+++|.+..++.|...+.... -...+.++|+.|+||||+|+.+++...-. ..|...
T Consensus 16 ~diiGq~~~v~~L~~~i~~~r-----l~ha~Lf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~sC~~i~~~~~~dl 90 (546)
T PRK14957 16 AEVAGQQHALNSLVHALETQK-----VHHAYLFTGTRGVGKTTLGRLLAKCLNCKTGVTAEPCNKCENCVAINNNSFIDL 90 (546)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHHHHHhcCCCCce
Confidence 468999999999999887422 34568899999999999999987521100 011112
Q ss_pred EEEEeCCCCCHHHHHHHHHHHcCCCCCCCccHHHHHHHHHHH-HhCCceEEEEeCCCCCCccChHHHHHhhcCCCCCcEE
Q 047321 165 IWVCVSNTFEEISVAKAIIEGLGVSAFGLSEFESLMKQIQEY-ITGKKIFLVLDDVWDGDYKKWDPFFSCLKNGHHESKI 243 (807)
Q Consensus 165 ~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~-l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~I 243 (807)
+++...... +..+...+...+... ..+++-++|+||+..-+...++.++..+......+.+
T Consensus 91 ieidaas~~------------------gvd~ir~ii~~~~~~p~~g~~kViIIDEa~~ls~~a~naLLK~LEepp~~v~f 152 (546)
T PRK14957 91 IEIDAASRT------------------GVEETKEILDNIQYMPSQGRYKVYLIDEVHMLSKQSFNALLKTLEEPPEYVKF 152 (546)
T ss_pred EEeeccccc------------------CHHHHHHHHHHHHhhhhcCCcEEEEEechhhccHHHHHHHHHHHhcCCCCceE
Confidence 222211111 112222333333221 3467779999999766666777888888776666666
Q ss_pred EEEcCC-HHHHHH-hCCCceEeCCCCChhhHHHHHHHHHhccCCccCccchHHHHHHHHHHcCCCHH-HHHHHHHHh
Q 047321 244 LITTHD-RSVALQ-LGSIDIIPVKELGEGECWLLFKQIAFLRRSFEDCEKLEPIGRKIASKCKGLPL-AAKVIGNLL 317 (807)
Q Consensus 244 liTTR~-~~v~~~-~~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~~~~I~~~c~glPL-ai~~~~~~l 317 (807)
|++|.+ ..+... ..-...+++++++.++....+.+.+-..+. .--.+....|++.++|.+- |+..+-.++
T Consensus 153 IL~Ttd~~kil~tI~SRc~~~~f~~Ls~~eI~~~L~~il~~egi----~~e~~Al~~Ia~~s~GdlR~alnlLek~i 225 (546)
T PRK14957 153 ILATTDYHKIPVTILSRCIQLHLKHISQADIKDQLKIILAKENI----NSDEQSLEYIAYHAKGSLRDALSLLDQAI 225 (546)
T ss_pred EEEECChhhhhhhHHHheeeEEeCCCCHHHHHHHHHHHHHHcCC----CCCHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 655544 333322 223568999999999998888876543221 1224556889999999764 555554433
No 65
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=98.38 E-value=2.6e-06 Score=85.06 Aligned_cols=183 Identities=15% Similarity=0.086 Sum_probs=115.0
Q ss_pred CccccccchHHHHHHHHhCCCCCCCCCceEEEEEccCCChHHHHHHHHHcCcccccccceEE-EEEeCCCCCHHHHHHHH
Q 047321 104 GGVCGRVDEKNELLSKLLCGSSEQQKGLDVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVI-WVCVSNTFEEISVAKAI 182 (807)
Q Consensus 104 ~~~vGR~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~-wv~~~~~~~~~~~~~~i 182 (807)
.+++|-+..++-|...+.. ...+...++|++|.|||+.|..++...--.+.|.+++ -.++|...... +.+.
T Consensus 36 de~~gQe~vV~~L~~a~~~------~~lp~~LFyGPpGTGKTStalafar~L~~~~~~~~rvl~lnaSderGis-vvr~- 107 (346)
T KOG0989|consen 36 DELAGQEHVVQVLKNALLR------RILPHYLFYGPPGTGKTSTALAFARALNCEQLFPCRVLELNASDERGIS-VVRE- 107 (346)
T ss_pred HhhcchHHHHHHHHHHHhh------cCCceEEeeCCCCCcHhHHHHHHHHHhcCccccccchhhhccccccccc-chhh-
Confidence 4689999999999999874 3678999999999999999988876322234555443 22333322111 0000
Q ss_pred HHHcCCCCCCCccHHHHHHHHHHHH--hCCc-eEEEEeCCCCCCccChHHHHHhhcCCCCCcEEEEEcCC-HHHHHHhC-
Q 047321 183 IEGLGVSAFGLSEFESLMKQIQEYI--TGKK-IFLVLDDVWDGDYKKWDPFFSCLKNGHHESKILITTHD-RSVALQLG- 257 (807)
Q Consensus 183 ~~~l~~~~~~~~~~~~~~~~l~~~l--~~k~-~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~IliTTR~-~~v~~~~~- 257 (807)
...+...+.....+.. .-++ -++|||++.....+.|..++..+.+....++.|+++-. ..+...+.
T Consensus 108 ---------Kik~fakl~~~~~~~~~~~~~~fKiiIlDEcdsmtsdaq~aLrr~mE~~s~~trFiLIcnylsrii~pi~S 178 (346)
T KOG0989|consen 108 ---------KIKNFAKLTVLLKRSDGYPCPPFKIIILDECDSMTSDAQAALRRTMEDFSRTTRFILICNYLSRIIRPLVS 178 (346)
T ss_pred ---------hhcCHHHHhhccccccCCCCCcceEEEEechhhhhHHHHHHHHHHHhccccceEEEEEcCChhhCChHHHh
Confidence 0001111110000000 0123 48899999888889999999999887666775555443 22222221
Q ss_pred CCceEeCCCCChhhHHHHHHHHHhccCCccCccchHHHHHHHHHHcCCCH
Q 047321 258 SIDIIPVKELGEGECWLLFKQIAFLRRSFEDCEKLEPIGRKIASKCKGLP 307 (807)
Q Consensus 258 ~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~~~~I~~~c~glP 307 (807)
-...|..++|.+++...-++..+-.++...+ .+..+.|++.++|--
T Consensus 179 RC~KfrFk~L~d~~iv~rL~~Ia~~E~v~~d----~~al~~I~~~S~GdL 224 (346)
T KOG0989|consen 179 RCQKFRFKKLKDEDIVDRLEKIASKEGVDID----DDALKLIAKISDGDL 224 (346)
T ss_pred hHHHhcCCCcchHHHHHHHHHHHHHhCCCCC----HHHHHHHHHHcCCcH
Confidence 2356899999999999999998865554322 345688999999853
No 66
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=98.38 E-value=3.2e-06 Score=85.84 Aligned_cols=159 Identities=21% Similarity=0.185 Sum_probs=101.0
Q ss_pred CCCceEEEEEccCCChHHHHHHHHHcCcccccccceEEEEEeCCCCCHHHHHHHHHHHcCCCCCCCccHHHHHHHHHHHH
Q 047321 128 QKGLDVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSNTFEEISVAKAIIEGLGVSAFGLSEFESLMKQIQEYI 207 (807)
Q Consensus 128 ~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l 207 (807)
.+..+-+.+||++|+||||||+.+....+-.. ..||..+....-..-+++|+++... ...+
T Consensus 159 q~~ipSmIlWGppG~GKTtlArlia~tsk~~S----yrfvelSAt~a~t~dvR~ife~aq~---------------~~~l 219 (554)
T KOG2028|consen 159 QNRIPSMILWGPPGTGKTTLARLIASTSKKHS----YRFVELSATNAKTNDVRDIFEQAQN---------------EKSL 219 (554)
T ss_pred cCCCCceEEecCCCCchHHHHHHHHhhcCCCc----eEEEEEeccccchHHHHHHHHHHHH---------------HHhh
Confidence 45788899999999999999999998533222 4566666655444445555544321 1234
Q ss_pred hCCceEEEEeCCCCCCccChHHHHHhhcCCCCCcEEEE--EcCCHHHH---HHhCCCceEeCCCCChhhHHHHHHHHHh-
Q 047321 208 TGKKIFLVLDDVWDGDYKKWDPFFSCLKNGHHESKILI--TTHDRSVA---LQLGSIDIIPVKELGEGECWLLFKQIAF- 281 (807)
Q Consensus 208 ~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~Ili--TTR~~~v~---~~~~~~~~~~l~~L~~~~~~~Lf~~~a~- 281 (807)
.++|.+|.+|+|...+..+-+. +||....|..++| ||.|+... ..+.-..++.|++|..++-..++.+..-
T Consensus 220 ~krkTilFiDEiHRFNksQQD~---fLP~VE~G~I~lIGATTENPSFqln~aLlSRC~VfvLekL~~n~v~~iL~raia~ 296 (554)
T KOG2028|consen 220 TKRKTILFIDEIHRFNKSQQDT---FLPHVENGDITLIGATTENPSFQLNAALLSRCRVFVLEKLPVNAVVTILMRAIAS 296 (554)
T ss_pred hcceeEEEeHHhhhhhhhhhhc---ccceeccCceEEEecccCCCccchhHHHHhccceeEeccCCHHHHHHHHHHHHHh
Confidence 5789999999997654433333 3555667775554 67766432 2234467899999999999888877332
Q ss_pred ccCCc----cCcc----chHHHHHHHHHHcCCCHH
Q 047321 282 LRRSF----EDCE----KLEPIGRKIASKCKGLPL 308 (807)
Q Consensus 282 ~~~~~----~~~~----~~~~~~~~I~~~c~glPL 308 (807)
..... ..+. -...+..-++..|.|---
T Consensus 297 l~dser~~~~l~n~s~~ve~siidyla~lsdGDaR 331 (554)
T KOG2028|consen 297 LGDSERPTDPLPNSSMFVEDSIIDYLAYLSDGDAR 331 (554)
T ss_pred hccccccCCCCCCcchhhhHHHHHHHHHhcCchHH
Confidence 11111 1111 124567778888888653
No 67
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=98.36 E-value=5.4e-06 Score=96.42 Aligned_cols=172 Identities=18% Similarity=0.272 Sum_probs=98.6
Q ss_pred CccccccchHH---HHHHHHhCCCCCCCCCceEEEEEccCCChHHHHHHHHHcCcccccccceEEEEEeCCCCCHHHHHH
Q 047321 104 GGVCGRVDEKN---ELLSKLLCGSSEQQKGLDVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSNTFEEISVAK 180 (807)
Q Consensus 104 ~~~vGR~~~~~---~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~ 180 (807)
.+|+|.+..+. .+...+. ......+.|+|++|+||||+|+.+++. ....| +.++....
T Consensus 28 dd~vGQe~ii~~~~~L~~~i~------~~~~~slLL~GPpGtGKTTLA~aIA~~--~~~~f-----~~lna~~~------ 88 (725)
T PRK13341 28 EEFVGQDHILGEGRLLRRAIK------ADRVGSLILYGPPGVGKTTLARIIANH--TRAHF-----SSLNAVLA------ 88 (725)
T ss_pred HHhcCcHHHhhhhHHHHHHHh------cCCCceEEEECCCCCCHHHHHHHHHHH--hcCcc-----eeehhhhh------
Confidence 46888887764 4555554 235567789999999999999999973 33333 11111100
Q ss_pred HHHHHcCCCCCCCccHHHHHHHHHHHH--hCCceEEEEeCCCCCCccChHHHHHhhcCCCCCcEEEEE--cCCHH--HHH
Q 047321 181 AIIEGLGVSAFGLSEFESLMKQIQEYI--TGKKIFLVLDDVWDGDYKKWDPFFSCLKNGHHESKILIT--THDRS--VAL 254 (807)
Q Consensus 181 ~i~~~l~~~~~~~~~~~~~~~~l~~~l--~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~IliT--TR~~~--v~~ 254 (807)
+..+.........+.+ .+++.+||+||++.-+...++.+...+. .|+.++|+ |.+.. +..
T Consensus 89 -----------~i~dir~~i~~a~~~l~~~~~~~IL~IDEIh~Ln~~qQdaLL~~lE---~g~IiLI~aTTenp~~~l~~ 154 (725)
T PRK13341 89 -----------GVKDLRAEVDRAKERLERHGKRTILFIDEVHRFNKAQQDALLPWVE---NGTITLIGATTENPYFEVNK 154 (725)
T ss_pred -----------hhHHHHHHHHHHHHHhhhcCCceEEEEeChhhCCHHHHHHHHHHhc---CceEEEEEecCCChHhhhhh
Confidence 0011111222222222 2467899999997655555555655443 34555553 44432 222
Q ss_pred Hh-CCCceEeCCCCChhhHHHHHHHHHhccCC---ccCccchHHHHHHHHHHcCCCHH
Q 047321 255 QL-GSIDIIPVKELGEGECWLLFKQIAFLRRS---FEDCEKLEPIGRKIASKCKGLPL 308 (807)
Q Consensus 255 ~~-~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~---~~~~~~~~~~~~~I~~~c~glPL 308 (807)
.+ .-...+.+++++.++...++.+.+-.... .....--.+....|++.+.|.--
T Consensus 155 aL~SR~~v~~l~pLs~edi~~IL~~~l~~~~~~~g~~~v~I~deaL~~La~~s~GD~R 212 (725)
T PRK13341 155 ALVSRSRLFRLKSLSDEDLHQLLKRALQDKERGYGDRKVDLEPEAEKHLVDVANGDAR 212 (725)
T ss_pred HhhccccceecCCCCHHHHHHHHHHHHHHHHhhcCCcccCCCHHHHHHHHHhCCCCHH
Confidence 11 12457999999999999999876631000 00111224567888889988754
No 68
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=98.35 E-value=2.8e-05 Score=84.79 Aligned_cols=183 Identities=13% Similarity=0.118 Sum_probs=111.9
Q ss_pred CccccccchHHHHHHHHhCCCCCCCCCceEEEEEccCCChHHHHHHHHHcCcccc--------------------cccce
Q 047321 104 GGVCGRVDEKNELLSKLLCGSSEQQKGLDVISLVGLGGIGKTTLAQLAYNNDEVK--------------------RNFEK 163 (807)
Q Consensus 104 ~~~vGR~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~--------------------~~f~~ 163 (807)
.+++|.+..++.+.+.+..+. -...+.++|+.|+||||+|+.+.....-. .+++.
T Consensus 14 ~~iig~~~~~~~l~~~~~~~~-----~~~~~Ll~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~~~ 88 (355)
T TIGR02397 14 EDVIGQEHIVQTLKNAIKNGR-----IAHAYLFSGPRGTGKTSIARIFAKALNCQNGPDGEPCNECESCKEINSGSSLDV 88 (355)
T ss_pred hhccCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCCE
Confidence 468999999999999886432 34578899999999999998886521100 12221
Q ss_pred EEEEEeCCCCCHHHHHHHHHHHcCCCCCCCccHHHHHHHHHHH-HhCCceEEEEeCCCCCCccChHHHHHhhcCCCCCcE
Q 047321 164 VIWVCVSNTFEEISVAKAIIEGLGVSAFGLSEFESLMKQIQEY-ITGKKIFLVLDDVWDGDYKKWDPFFSCLKNGHHESK 242 (807)
Q Consensus 164 ~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~-l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ 242 (807)
+++.-....... +...+...+... ..+++-++|+|++..-.......+...+......+.
T Consensus 89 -~~~~~~~~~~~~------------------~~~~l~~~~~~~p~~~~~~vviidea~~l~~~~~~~Ll~~le~~~~~~~ 149 (355)
T TIGR02397 89 -IEIDAASNNGVD------------------DIREILDNVKYAPSSGKYKVYIIDEVHMLSKSAFNALLKTLEEPPEHVV 149 (355)
T ss_pred -EEeeccccCCHH------------------HHHHHHHHHhcCcccCCceEEEEeChhhcCHHHHHHHHHHHhCCcccee
Confidence 222211111111 111122221111 234566899999855444556667777765555666
Q ss_pred EEEEcCCHH-HHHHh-CCCceEeCCCCChhhHHHHHHHHHhccCCccCccchHHHHHHHHHHcCCCHHHHHHHH
Q 047321 243 ILITTHDRS-VALQL-GSIDIIPVKELGEGECWLLFKQIAFLRRSFEDCEKLEPIGRKIASKCKGLPLAAKVIG 314 (807)
Q Consensus 243 IliTTR~~~-v~~~~-~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~~~~I~~~c~glPLai~~~~ 314 (807)
+|++|.+.. +...+ .....+++.++++++....+...+-..+.. --.+.+..+++.++|.|..+....
T Consensus 150 lIl~~~~~~~l~~~l~sr~~~~~~~~~~~~~l~~~l~~~~~~~g~~----i~~~a~~~l~~~~~g~~~~a~~~l 219 (355)
T TIGR02397 150 FILATTEPHKIPATILSRCQRFDFKRIPLEDIVERLKKILDKEGIK----IEDEALELIARAADGSLRDALSLL 219 (355)
T ss_pred EEEEeCCHHHHHHHHHhheeEEEcCCCCHHHHHHHHHHHHHHcCCC----CCHHHHHHHHHHcCCChHHHHHHH
Confidence 667765543 22222 224578899999999999998877443321 124677889999999987665443
No 69
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.33 E-value=1.6e-05 Score=87.86 Aligned_cols=180 Identities=17% Similarity=0.153 Sum_probs=113.1
Q ss_pred CccccccchHHHHHHHHhCCCCCCCCCceEEEEEccCCChHHHHHHHHHcCcc------------------cc-cccceE
Q 047321 104 GGVCGRVDEKNELLSKLLCGSSEQQKGLDVISLVGLGGIGKTTLAQLAYNNDE------------------VK-RNFEKV 164 (807)
Q Consensus 104 ~~~vGR~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~------------------~~-~~f~~~ 164 (807)
.++||.+..++.|...+..+. -...+.++|+.|+||||+|+.++.... +. ..+.-+
T Consensus 13 ~dliGQe~vv~~L~~a~~~~r-----i~ha~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~~~pCg~C~~C~~i~~~~~~Dv 87 (491)
T PRK14964 13 KDLVGQDVLVRILRNAFTLNK-----IPQSILLVGASGVGKTTCARIISLCLNCSNGPTSDPCGTCHNCISIKNSNHPDV 87 (491)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-----CCceEEEECCCCccHHHHHHHHHHHHcCcCCCCCCCccccHHHHHHhccCCCCE
Confidence 468999988888888876422 345789999999999999998865110 00 011122
Q ss_pred EEEEeCCCCCHHHHHHHHHHHcCCCCCCCccHHHHHHHHHHH-HhCCceEEEEeCCCCCCccChHHHHHhhcCCCCCcEE
Q 047321 165 IWVCVSNTFEEISVAKAIIEGLGVSAFGLSEFESLMKQIQEY-ITGKKIFLVLDDVWDGDYKKWDPFFSCLKNGHHESKI 243 (807)
Q Consensus 165 ~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~-l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~I 243 (807)
+.++.+....+.. ..++.+..... +.+++-++|+|++..-.......+...+..-.+.+++
T Consensus 88 ~eidaas~~~vdd------------------IR~Iie~~~~~P~~~~~KVvIIDEah~Ls~~A~NaLLK~LEePp~~v~f 149 (491)
T PRK14964 88 IEIDAASNTSVDD------------------IKVILENSCYLPISSKFKVYIIDEVHMLSNSAFNALLKTLEEPAPHVKF 149 (491)
T ss_pred EEEecccCCCHHH------------------HHHHHHHHHhccccCCceEEEEeChHhCCHHHHHHHHHHHhCCCCCeEE
Confidence 3333322222211 11111111110 2356778999999766666677788888776667766
Q ss_pred EEEcCC-HHHHHHh-CCCceEeCCCCChhhHHHHHHHHHhccCCccCccchHHHHHHHHHHcCCCHHHH
Q 047321 244 LITTHD-RSVALQL-GSIDIIPVKELGEGECWLLFKQIAFLRRSFEDCEKLEPIGRKIASKCKGLPLAA 310 (807)
Q Consensus 244 liTTR~-~~v~~~~-~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~~~~I~~~c~glPLai 310 (807)
|++|.+ ..+...+ .....+++++++.++....+.+.+...+.. --.+.+..|++.++|.+-.+
T Consensus 150 Ilatte~~Kl~~tI~SRc~~~~f~~l~~~el~~~L~~ia~~Egi~----i~~eAL~lIa~~s~GslR~a 214 (491)
T PRK14964 150 ILATTEVKKIPVTIISRCQRFDLQKIPTDKLVEHLVDIAKKENIE----HDEESLKLIAENSSGSMRNA 214 (491)
T ss_pred EEEeCChHHHHHHHHHhheeeecccccHHHHHHHHHHHHHHcCCC----CCHHHHHHHHHHcCCCHHHH
Confidence 666543 4443332 235689999999999999998887544321 12456788999999987644
No 70
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=98.32 E-value=1e-05 Score=92.18 Aligned_cols=194 Identities=17% Similarity=0.190 Sum_probs=116.0
Q ss_pred CccccccchHHHHHHHHhCCCCCCCCCceEEEEEccCCChHHHHHHHHHcCcccccccceEEEEEeCCCCCHHHHHHHHH
Q 047321 104 GGVCGRVDEKNELLSKLLCGSSEQQKGLDVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSNTFEEISVAKAII 183 (807)
Q Consensus 104 ~~~vGR~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 183 (807)
.++||.+..++.|...+..+. -...+.++|+.|+||||+|+.+++...-...+. ......-...+.|.
T Consensus 16 ~divGQe~vv~~L~~~l~~~r-----l~hAyLf~Gp~GvGKTTlAr~lAk~L~c~~~~~-------~~pCg~C~~C~~i~ 83 (647)
T PRK07994 16 AEVVGQEHVLTALANALDLGR-----LHHAYLFSGTRGVGKTTIARLLAKGLNCETGIT-------ATPCGECDNCREIE 83 (647)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHhhhhccCCC-------CCCCCCCHHHHHHH
Confidence 469999999999998887422 345578999999999999999876321110000 00111111222221
Q ss_pred HH-------cCCC-CCCCccHHHHHHHHHHH-HhCCceEEEEeCCCCCCccChHHHHHhhcCCCCCcEEEEEcCCH-HHH
Q 047321 184 EG-------LGVS-AFGLSEFESLMKQIQEY-ITGKKIFLVLDDVWDGDYKKWDPFFSCLKNGHHESKILITTHDR-SVA 253 (807)
Q Consensus 184 ~~-------l~~~-~~~~~~~~~~~~~l~~~-l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~IliTTR~~-~v~ 253 (807)
.. +... ..+.++..++...+... ..+++-++|+|++..-.......++..+.......++|++|.+. .+.
T Consensus 84 ~g~~~D~ieidaas~~~VddiR~li~~~~~~p~~g~~KV~IIDEah~Ls~~a~NALLKtLEEPp~~v~FIL~Tt~~~kLl 163 (647)
T PRK07994 84 QGRFVDLIEIDAASRTKVEDTRELLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLP 163 (647)
T ss_pred cCCCCCceeecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEechHhCCHHHHHHHHHHHHcCCCCeEEEEecCCccccc
Confidence 10 0000 01112222222222211 24677899999998777777788888887766666666655553 333
Q ss_pred HH-hCCCceEeCCCCChhhHHHHHHHHHhccCCccCccchHHHHHHHHHHcCCCHHHHHHH
Q 047321 254 LQ-LGSIDIIPVKELGEGECWLLFKQIAFLRRSFEDCEKLEPIGRKIASKCKGLPLAAKVI 313 (807)
Q Consensus 254 ~~-~~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~~~~I~~~c~glPLai~~~ 313 (807)
.. ..-...+.+++++.++....+.+.+-..+. ....+....|++.++|.+-.+..+
T Consensus 164 ~TI~SRC~~~~f~~Ls~~ei~~~L~~il~~e~i----~~e~~aL~~Ia~~s~Gs~R~Al~l 220 (647)
T PRK07994 164 VTILSRCLQFHLKALDVEQIRQQLEHILQAEQI----PFEPRALQLLARAADGSMRDALSL 220 (647)
T ss_pred hHHHhhheEeeCCCCCHHHHHHHHHHHHHHcCC----CCCHHHHHHHHHHcCCCHHHHHHH
Confidence 22 222568999999999999999887633221 112455688999999988654433
No 71
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.31 E-value=1.4e-05 Score=90.89 Aligned_cols=196 Identities=13% Similarity=0.128 Sum_probs=113.0
Q ss_pred CccccccchHHHHHHHHhCCCCCCCCCceEEEEEccCCChHHHHHHHHHcCcccccc--cceEEEEEeCCCCCHHHHHHH
Q 047321 104 GGVCGRVDEKNELLSKLLCGSSEQQKGLDVISLVGLGGIGKTTLAQLAYNNDEVKRN--FEKVIWVCVSNTFEEISVAKA 181 (807)
Q Consensus 104 ~~~vGR~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~--f~~~~wv~~~~~~~~~~~~~~ 181 (807)
.++||-+..++.|..++.... -...+.++|+.|+||||+|+.+.+...-... ...... .....-...+.
T Consensus 16 ~dviGQe~vv~~L~~~l~~~r-----l~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~~~~~~~~~~~----~pCg~C~~C~~ 86 (618)
T PRK14951 16 SEMVGQEHVVQALTNALTQQR-----LHHAYLFTGTRGVGKTTVSRILAKSLNCQGPDGQGGITA----TPCGVCQACRD 86 (618)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHHhcCCCcccccCCCC----CCCCccHHHHH
Confidence 468998888888888887432 3467799999999999999998642110000 000000 00111111122
Q ss_pred HHHHcC-----CCCCCCccHHHHHHHHHHH----HhCCceEEEEeCCCCCCccChHHHHHhhcCCCCCcEEEEEcCC-HH
Q 047321 182 IIEGLG-----VSAFGLSEFESLMKQIQEY----ITGKKIFLVLDDVWDGDYKKWDPFFSCLKNGHHESKILITTHD-RS 251 (807)
Q Consensus 182 i~~~l~-----~~~~~~~~~~~~~~~l~~~----l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~IliTTR~-~~ 251 (807)
|...-. .........++..+.+... ..++.-++|+|+++.-+...+..++..+.......++|++|.+ ..
T Consensus 87 i~~g~h~D~~eldaas~~~Vd~iReli~~~~~~p~~g~~KV~IIDEvh~Ls~~a~NaLLKtLEEPP~~~~fIL~Ttd~~k 166 (618)
T PRK14951 87 IDSGRFVDYTELDAASNRGVDEVQQLLEQAVYKPVQGRFKVFMIDEVHMLTNTAFNAMLKTLEEPPEYLKFVLATTDPQK 166 (618)
T ss_pred HHcCCCCceeecCcccccCHHHHHHHHHHHHhCcccCCceEEEEEChhhCCHHHHHHHHHhcccCCCCeEEEEEECCchh
Confidence 211000 0000111222222222111 1345668999999877777777788877765556666655544 33
Q ss_pred HHHH-hCCCceEeCCCCChhhHHHHHHHHHhccCCccCccchHHHHHHHHHHcCCCHHHHHH
Q 047321 252 VALQ-LGSIDIIPVKELGEGECWLLFKQIAFLRRSFEDCEKLEPIGRKIASKCKGLPLAAKV 312 (807)
Q Consensus 252 v~~~-~~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~~~~I~~~c~glPLai~~ 312 (807)
+... ..-...+++++++.++....+.+.+-..+.. -..+....|++.++|.+--+..
T Consensus 167 il~TIlSRc~~~~f~~Ls~eei~~~L~~i~~~egi~----ie~~AL~~La~~s~GslR~al~ 224 (618)
T PRK14951 167 VPVTVLSRCLQFNLRPMAPETVLEHLTQVLAAENVP----AEPQALRLLARAARGSMRDALS 224 (618)
T ss_pred hhHHHHHhceeeecCCCCHHHHHHHHHHHHHHcCCC----CCHHHHHHHHHHcCCCHHHHHH
Confidence 3322 2335689999999999999998876443321 1245678899999998755443
No 72
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=98.31 E-value=9.6e-08 Score=102.49 Aligned_cols=272 Identities=19% Similarity=0.122 Sum_probs=148.0
Q ss_pred ceEEEEEeeccCCC-----CccccCCCCceeEEEeCCCCCCCCCCCCccccccccCcccceeeecccc-CCccCeeEecC
Q 047321 468 KVRHLGLKFEEGAS-----FPMSIHGLNRLRTLLIYDQSPYNPSLSSSILPELFNKLACLRALVIRQS-LRTLEKFVVGG 541 (807)
Q Consensus 468 ~~r~L~l~~~~~~~-----~~~~~~~l~~Lr~L~l~~~~~~~l~~~i~~LP~~i~~L~~L~~LdL~~~-L~~L~~l~~~~ 541 (807)
.++.+.+.++.+.. ++..+...++|+.|++.++.--.....+..++..+.++.+|++|+++.+ +...
T Consensus 24 ~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~------- 96 (319)
T cd00116 24 CLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPD------- 96 (319)
T ss_pred hccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChh-------
Confidence 37777777777632 4556667788888888875200000122345667778888888888722 1100
Q ss_pred ccCCCccccccccccccccCcccccCCCCCCChhHHHHhhccCC-CCCCeEEEEeeccCCCcchhhhhchhhHHHHHHhh
Q 047321 542 GVDGSNTCRLESLKNLQLLRECGIEGLGNVSHLDEAERLQLYNQ-QNLLRLRLRFGRVVDGEDEERRRKNEKDKQLLEAL 620 (807)
Q Consensus 542 ~~~~~~~~~i~~L~~L~~L~~L~i~~l~~~~~~~~~~~~~l~~l-~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~l 620 (807)
....+..+..-.+|+.|.+++..--..........+..+ ++|+.|+++.|.+... ....+.+.
T Consensus 97 -----~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~----------~~~~~~~~- 160 (319)
T cd00116 97 -----GCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGA----------SCEALAKA- 160 (319)
T ss_pred -----HHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCch----------HHHHHHHH-
Confidence 011111111113366666665321111122333455666 8999999998874210 00111111
Q ss_pred cCCCCCCCCCCCcc-cceEeccCCcCceeeCcccCCCCCCCCCCCCCCCCCCccccCcccccccccCCCccccchhhhcc
Q 047321 621 QPPLSHLPPLGKLP-LKKLELRDLESVKRVGNEFLGIEESSEDDPSSSSSSPSVIAFPKLKSLEIDGMKELEEWNYRITR 699 (807)
Q Consensus 621 ~p~~~~lp~l~~L~-L~~L~L~~~~~l~~i~~~~~~~~~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~ 699 (807)
+..++ |++|+++++. ++..+... .+.....+++|+.|++++|. +...... .-
T Consensus 161 ---------~~~~~~L~~L~l~~n~-l~~~~~~~---------------l~~~l~~~~~L~~L~L~~n~-i~~~~~~-~l 213 (319)
T cd00116 161 ---------LRANRDLKELNLANNG-IGDAGIRA---------------LAEGLKANCNLEVLDLNNNG-LTDEGAS-AL 213 (319)
T ss_pred ---------HHhCCCcCEEECcCCC-CchHHHHH---------------HHHHHHhCCCCCEEeccCCc-cChHHHH-HH
Confidence 23345 8899998754 32111000 00012245789999998873 3321110 00
Q ss_pred ccCCCCCCcccEEEEccCCCCCC-----Ccccc-cCCCCccEEeeccCcccc-----cccccccccCCCCCCCCeeeecc
Q 047321 700 KENISIMPRLSSLQIMNCRKLKA-----LPDYL-LQTIALQKLSIYSCDLLE-----ELPILEDRRTTDIPRLSSLAIWY 768 (807)
Q Consensus 700 ~~~~~~l~~L~~L~l~~c~~L~~-----lp~~l-~~l~~L~~L~l~~c~~l~-----~lP~~~~~~~~~l~~L~~L~i~~ 768 (807)
...+..+++|+.|++++| .+.. +...+ ...+.|++|++++|. ++ .++ ..+..+++|+++++++
T Consensus 214 ~~~~~~~~~L~~L~ls~n-~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~-i~~~~~~~l~----~~~~~~~~L~~l~l~~ 287 (319)
T cd00116 214 AETLASLKSLEVLNLGDN-NLTDAGAAALASALLSPNISLLTLSLSCND-ITDDGAKDLA----EVLAEKESLLELDLRG 287 (319)
T ss_pred HHHhcccCCCCEEecCCC-cCchHHHHHHHHHHhccCCCceEEEccCCC-CCcHHHHHHH----HHHhcCCCccEEECCC
Confidence 113446789999999998 4542 11111 124789999999974 32 222 3345668899999998
Q ss_pred CCCcc----cCCccCCCC-Ccccccccccchh
Q 047321 769 CPKLK----VLPDYLLRT-TTLQAGEQDYENE 795 (807)
Q Consensus 769 c~~l~----~lP~~l~~l-~~L~~L~l~~~~~ 795 (807)
|..-. .+...+... +.|+.+++..+++
T Consensus 288 N~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (319)
T cd00116 288 NKFGEEGAQLLAESLLEPGNELESLWVKDDSF 319 (319)
T ss_pred CCCcHHHHHHHHHHHhhcCCchhhcccCCCCC
Confidence 65432 244444444 6888888888764
No 73
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.30 E-value=1.4e-05 Score=89.81 Aligned_cols=181 Identities=14% Similarity=0.106 Sum_probs=111.3
Q ss_pred CccccccchHHHHHHHHhCCCCCCCCCceEEEEEccCCChHHHHHHHHHcCccccc-------------------ccceE
Q 047321 104 GGVCGRVDEKNELLSKLLCGSSEQQKGLDVISLVGLGGIGKTTLAQLAYNNDEVKR-------------------NFEKV 164 (807)
Q Consensus 104 ~~~vGR~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~-------------------~f~~~ 164 (807)
.++||-+..++.|..++.... -...+.++|+.|+||||+|+.+++...-.. .|.-+
T Consensus 16 ~divGq~~v~~~L~~~~~~~~-----l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C~~i~~g~~~d~ 90 (509)
T PRK14958 16 QEVIGQAPVVRALSNALDQQY-----LHHAYLFTGTRGVGKTTISRILAKCLNCEKGVSANPCNDCENCREIDEGRFPDL 90 (509)
T ss_pred HHhcCCHHHHHHHHHHHHhCC-----CCeeEEEECCCCCCHHHHHHHHHHHhcCCCCCCcccCCCCHHHHHHhcCCCceE
Confidence 469999999999999997432 345678999999999999999876321111 11112
Q ss_pred EEEEeCCCCCHHHHHHHHHHHcCCCCCCCccHHHHHHHHHH-HHhCCceEEEEeCCCCCCccChHHHHHhhcCCCCCcEE
Q 047321 165 IWVCVSNTFEEISVAKAIIEGLGVSAFGLSEFESLMKQIQE-YITGKKIFLVLDDVWDGDYKKWDPFFSCLKNGHHESKI 243 (807)
Q Consensus 165 ~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~-~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~I 243 (807)
+.++......+. +..++...+.. -..++.-++|+|++..-.......++..+......+++
T Consensus 91 ~eidaas~~~v~------------------~iR~l~~~~~~~p~~~~~kV~iIDE~~~ls~~a~naLLk~LEepp~~~~f 152 (509)
T PRK14958 91 FEVDAASRTKVE------------------DTRELLDNIPYAPTKGRFKVYLIDEVHMLSGHSFNALLKTLEEPPSHVKF 152 (509)
T ss_pred EEEcccccCCHH------------------HHHHHHHHHhhccccCCcEEEEEEChHhcCHHHHHHHHHHHhccCCCeEE
Confidence 222221111111 11111111111 11356679999999776666777788888776666777
Q ss_pred EEEcCCH-HHHHHh-CCCceEeCCCCChhhHHHHHHHHHhccCCccCccchHHHHHHHHHHcCCCHHHHH
Q 047321 244 LITTHDR-SVALQL-GSIDIIPVKELGEGECWLLFKQIAFLRRSFEDCEKLEPIGRKIASKCKGLPLAAK 311 (807)
Q Consensus 244 liTTR~~-~v~~~~-~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~~~~I~~~c~glPLai~ 311 (807)
|++|.+. .+...+ .....+++++++.++....+.+.+-..+.. --.+....|++.++|.+.-+.
T Consensus 153 Ilattd~~kl~~tI~SRc~~~~f~~l~~~~i~~~l~~il~~egi~----~~~~al~~ia~~s~GslR~al 218 (509)
T PRK14958 153 ILATTDHHKLPVTVLSRCLQFHLAQLPPLQIAAHCQHLLKEENVE----FENAALDLLARAANGSVRDAL 218 (509)
T ss_pred EEEECChHhchHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCC----CCHHHHHHHHHHcCCcHHHHH
Confidence 6665443 332222 224578999999999888777766433221 123456789999999886443
No 74
>PRK05642 DNA replication initiation factor; Validated
Probab=98.30 E-value=3.6e-05 Score=77.96 Aligned_cols=154 Identities=14% Similarity=0.168 Sum_probs=94.3
Q ss_pred ceEEEEEccCCChHHHHHHHHHcCcccccccceEEEEEeCCCCCHHHHHHHHHHHcCCCCCCCccHHHHHHHHHHHHhCC
Q 047321 131 LDVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSNTFEEISVAKAIIEGLGVSAFGLSEFESLMKQIQEYITGK 210 (807)
Q Consensus 131 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k 210 (807)
...+.|+|..|+|||.|++.+++. ....-..++|++..+ +... . ..+.+.+.+-
T Consensus 45 ~~~l~l~G~~G~GKTHLl~a~~~~--~~~~~~~v~y~~~~~------~~~~--------------~----~~~~~~~~~~ 98 (234)
T PRK05642 45 ESLIYLWGKDGVGRSHLLQAACLR--FEQRGEPAVYLPLAE------LLDR--------------G----PELLDNLEQY 98 (234)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH--HHhCCCcEEEeeHHH------HHhh--------------h----HHHHHhhhhC
Confidence 467899999999999999999873 222223456665321 1110 0 1222223322
Q ss_pred ceEEEEeCCCCC-CccChHH-HHHhhcCC-CCCcEEEEEcCCHHH---------HHHhCCCceEeCCCCChhhHHHHHHH
Q 047321 211 KIFLVLDDVWDG-DYKKWDP-FFSCLKNG-HHESKILITTHDRSV---------ALQLGSIDIIPVKELGEGECWLLFKQ 278 (807)
Q Consensus 211 ~~LlVlDdv~~~-~~~~~~~-l~~~l~~~-~~gs~IliTTR~~~v---------~~~~~~~~~~~l~~L~~~~~~~Lf~~ 278 (807)
-+||+||+... ....|+. +...+... ..|..||+|++...- ...+.....+++.+++.++-.+++..
T Consensus 99 -d~LiiDDi~~~~~~~~~~~~Lf~l~n~~~~~g~~ilits~~~p~~l~~~~~~L~SRl~~gl~~~l~~~~~e~~~~il~~ 177 (234)
T PRK05642 99 -ELVCLDDLDVIAGKADWEEALFHLFNRLRDSGRRLLLAASKSPRELPIKLPDLKSRLTLALVFQMRGLSDEDKLRALQL 177 (234)
T ss_pred -CEEEEechhhhcCChHHHHHHHHHHHHHHhcCCEEEEeCCCCHHHcCccCccHHHHHhcCeeeecCCCCHHHHHHHHHH
Confidence 36889999543 2245554 55555432 346678888875332 12222335789999999999999997
Q ss_pred HHhccCCccCccchHHHHHHHHHHcCCCHHHHHHHHH
Q 047321 279 IAFLRRSFEDCEKLEPIGRKIASKCKGLPLAAKVIGN 315 (807)
Q Consensus 279 ~a~~~~~~~~~~~~~~~~~~I~~~c~glPLai~~~~~ 315 (807)
++...+- . --.++...|++.+.|..-++..+-.
T Consensus 178 ka~~~~~-~---l~~ev~~~L~~~~~~d~r~l~~~l~ 210 (234)
T PRK05642 178 RASRRGL-H---LTDEVGHFILTRGTRSMSALFDLLE 210 (234)
T ss_pred HHHHcCC-C---CCHHHHHHHHHhcCCCHHHHHHHHH
Confidence 7654321 1 1257788999999988766554433
No 75
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=98.29 E-value=1.4e-05 Score=90.69 Aligned_cols=192 Identities=15% Similarity=0.154 Sum_probs=111.2
Q ss_pred CccccccchHHHHHHHHhCCCCCCCCCceEEEEEccCCChHHHHHHHHHcCcccccccceEEEEEeCCCCCHHHHHHHHH
Q 047321 104 GGVCGRVDEKNELLSKLLCGSSEQQKGLDVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSNTFEEISVAKAII 183 (807)
Q Consensus 104 ~~~vGR~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 183 (807)
.++||.+..++.|..++.... -...+.++|+.|+||||+|+.+.+......... +. ....-...+.|.
T Consensus 16 ddIIGQe~vv~~L~~ai~~~r-----l~Ha~Lf~GP~GvGKTTlAriLAk~LnC~~~~~---~~----pCg~C~sCr~i~ 83 (709)
T PRK08691 16 ADLVGQEHVVKALQNALDEGR-----LHHAYLLTGTRGVGKTTIARILAKSLNCENAQH---GE----PCGVCQSCTQID 83 (709)
T ss_pred HHHcCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCcHHHHHHHHHHHhcccCCCC---CC----CCcccHHHHHHh
Confidence 469999999999999987432 356789999999999999999876311110000 00 000000001110
Q ss_pred HH-----cCCCCCCCccHHHHHHHHHH---H-HhCCceEEEEeCCCCCCccChHHHHHhhcCCCCCcEEEEEcCCH-HHH
Q 047321 184 EG-----LGVSAFGLSEFESLMKQIQE---Y-ITGKKIFLVLDDVWDGDYKKWDPFFSCLKNGHHESKILITTHDR-SVA 253 (807)
Q Consensus 184 ~~-----l~~~~~~~~~~~~~~~~l~~---~-l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~IliTTR~~-~v~ 253 (807)
.. +..........+.+...+.. . ..+++-++|+|++..-+......++..+......+++|++|.+. .+.
T Consensus 84 ~g~~~DvlEidaAs~~gVd~IRelle~a~~~P~~gk~KVIIIDEad~Ls~~A~NALLKtLEEPp~~v~fILaTtd~~kL~ 163 (709)
T PRK08691 84 AGRYVDLLEIDAASNTGIDNIREVLENAQYAPTAGKYKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFILATTDPHKVP 163 (709)
T ss_pred ccCccceEEEeccccCCHHHHHHHHHHHHhhhhhCCcEEEEEECccccCHHHHHHHHHHHHhCCCCcEEEEEeCCccccc
Confidence 00 00000011112222222211 1 23667799999996655555666777776655566677666543 222
Q ss_pred HH-hCCCceEeCCCCChhhHHHHHHHHHhccCCccCccchHHHHHHHHHHcCCCHHHHH
Q 047321 254 LQ-LGSIDIIPVKELGEGECWLLFKQIAFLRRSFEDCEKLEPIGRKIASKCKGLPLAAK 311 (807)
Q Consensus 254 ~~-~~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~~~~I~~~c~glPLai~ 311 (807)
.. .+....+.+++++.++....+.+.+-..+.. -..+....|++.++|.+.-+.
T Consensus 164 ~TIrSRC~~f~f~~Ls~eeI~~~L~~Il~kEgi~----id~eAL~~Ia~~A~GslRdAl 218 (709)
T PRK08691 164 VTVLSRCLQFVLRNMTAQQVADHLAHVLDSEKIA----YEPPALQLLGRAAAGSMRDAL 218 (709)
T ss_pred hHHHHHHhhhhcCCCCHHHHHHHHHHHHHHcCCC----cCHHHHHHHHHHhCCCHHHHH
Confidence 11 1223568899999999999998877543321 124567899999999985443
No 76
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=98.29 E-value=3.4e-05 Score=82.98 Aligned_cols=193 Identities=13% Similarity=0.101 Sum_probs=115.1
Q ss_pred CccccccchHHHHHHHHhCCCCCCCCCceEEEEEccCCChHHHHHHHHHcCcccccccceE---E---EEEeCCCCCHHH
Q 047321 104 GGVCGRVDEKNELLSKLLCGSSEQQKGLDVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKV---I---WVCVSNTFEEIS 177 (807)
Q Consensus 104 ~~~vGR~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~---~---wv~~~~~~~~~~ 177 (807)
.+++|.++.++.+.+.+..+. -...+.++|+.|+||+|+|..+....--....... . -..+... -.
T Consensus 19 ~~iiGq~~~~~~L~~~~~~~r-----l~HA~Lf~Gp~G~GK~~lA~~~A~~Llc~~~~~~~~~~~~~~~l~~~~~---c~ 90 (365)
T PRK07471 19 TALFGHAAAEAALLDAYRSGR-----LHHAWLIGGPQGIGKATLAYRMARFLLATPPPGGDGAVPPPTSLAIDPD---HP 90 (365)
T ss_pred hhccChHHHHHHHHHHHHcCC-----CCceEEEECCCCCCHHHHHHHHHHHHhCCCCCCCCccccccccccCCCC---Ch
Confidence 479999999999999887532 34568999999999999998775421000000000 0 0000000 01
Q ss_pred HHHHHHHHcCCC---------C-----CCCccHHHHHHHHHHHH-----hCCceEEEEeCCCCCCccChHHHHHhhcCCC
Q 047321 178 VAKAIIEGLGVS---------A-----FGLSEFESLMKQIQEYI-----TGKKIFLVLDDVWDGDYKKWDPFFSCLKNGH 238 (807)
Q Consensus 178 ~~~~i~~~l~~~---------~-----~~~~~~~~~~~~l~~~l-----~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~ 238 (807)
..+.|...-... . .....+++ ++.+.+.+ .+.+.++|+||+...+......+...+....
T Consensus 91 ~c~~i~~~~HPDl~~i~~~~~~~~~~~~~~I~Vdq-iR~l~~~~~~~~~~~~~kVviIDead~m~~~aanaLLK~LEepp 169 (365)
T PRK07471 91 VARRIAAGAHGGLLTLERSWNEKGKRLRTVITVDE-VRELISFFGLTAAEGGWRVVIVDTADEMNANAANALLKVLEEPP 169 (365)
T ss_pred HHHHHHccCCCCeEEEecccccccccccccccHHH-HHHHHHHhCcCcccCCCEEEEEechHhcCHHHHHHHHHHHhcCC
Confidence 111111111000 0 01112333 23333333 3567799999998777777778888887766
Q ss_pred CCcEEEEEcCCHH-HHHHh-CCCceEeCCCCChhhHHHHHHHHHhccCCccCccchHHHHHHHHHHcCCCHHHHHHH
Q 047321 239 HESKILITTHDRS-VALQL-GSIDIIPVKELGEGECWLLFKQIAFLRRSFEDCEKLEPIGRKIASKCKGLPLAAKVI 313 (807)
Q Consensus 239 ~gs~IliTTR~~~-v~~~~-~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~~~~I~~~c~glPLai~~~ 313 (807)
.++.+|++|++.. +...+ .....+.+.+++.++..+++.+.... . .......+++.++|.|+.+..+
T Consensus 170 ~~~~~IL~t~~~~~llpti~SRc~~i~l~~l~~~~i~~~L~~~~~~-----~---~~~~~~~l~~~s~Gsp~~Al~l 238 (365)
T PRK07471 170 ARSLFLLVSHAPARLLPTIRSRCRKLRLRPLAPEDVIDALAAAGPD-----L---PDDPRAALAALAEGSVGRALRL 238 (365)
T ss_pred CCeEEEEEECCchhchHHhhccceEEECCCCCHHHHHHHHHHhccc-----C---CHHHHHHHHHHcCCCHHHHHHH
Confidence 6777888887754 32222 23568999999999999999875311 1 1122267899999999866544
No 77
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=98.29 E-value=2.4e-05 Score=79.28 Aligned_cols=153 Identities=15% Similarity=0.143 Sum_probs=89.7
Q ss_pred CceEEEEEccCCChHHHHHHHHHcCcccccccceEEEEEeCCCCCHHHHHHHHHHHcCCCCCCCccHHHHHHHHHHHHhC
Q 047321 130 GLDVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSNTFEEISVAKAIIEGLGVSAFGLSEFESLMKQIQEYITG 209 (807)
Q Consensus 130 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~ 209 (807)
..+.+.|+|+.|+|||+||+.+++... .... ...+++..... .. + .. ..
T Consensus 41 ~~~~~~l~G~~G~GKT~La~ai~~~~~-~~~~-~~~~i~~~~~~------~~----~------------------~~-~~ 89 (227)
T PRK08903 41 ADRFFYLWGEAGSGRSHLLQALVADAS-YGGR-NARYLDAASPL------LA----F------------------DF-DP 89 (227)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHH-hCCC-cEEEEehHHhH------HH----H------------------hh-cc
Confidence 456789999999999999999987421 1121 23344432211 00 0 01 12
Q ss_pred CceEEEEeCCCCCCccChHHHHHhhcCC-CCCc-EEEEEcCCHHHH--------HHhCCCceEeCCCCChhhHHHHHHHH
Q 047321 210 KKIFLVLDDVWDGDYKKWDPFFSCLKNG-HHES-KILITTHDRSVA--------LQLGSIDIIPVKELGEGECWLLFKQI 279 (807)
Q Consensus 210 k~~LlVlDdv~~~~~~~~~~l~~~l~~~-~~gs-~IliTTR~~~v~--------~~~~~~~~~~l~~L~~~~~~~Lf~~~ 279 (807)
..-+||+||+..-+...-..+...+... ..+. .||+|++..... ..+.....+++.++++++-..++.+.
T Consensus 90 ~~~~liiDdi~~l~~~~~~~L~~~~~~~~~~~~~~vl~~~~~~~~~~~l~~~L~sr~~~~~~i~l~pl~~~~~~~~l~~~ 169 (227)
T PRK08903 90 EAELYAVDDVERLDDAQQIALFNLFNRVRAHGQGALLVAGPAAPLALPLREDLRTRLGWGLVYELKPLSDADKIAALKAA 169 (227)
T ss_pred cCCEEEEeChhhcCchHHHHHHHHHHHHHHcCCcEEEEeCCCCHHhCCCCHHHHHHHhcCeEEEecCCCHHHHHHHHHHH
Confidence 3457899999543332333354555332 2333 366666643321 12222358899999998877777665
Q ss_pred HhccCCccCccchHHHHHHHHHHcCCCHHHHHHHHHHh
Q 047321 280 AFLRRSFEDCEKLEPIGRKIASKCKGLPLAAKVIGNLL 317 (807)
Q Consensus 280 a~~~~~~~~~~~~~~~~~~I~~~c~glPLai~~~~~~l 317 (807)
+-..+- .--.++...+++.+.|.+..+..+-..+
T Consensus 170 ~~~~~v----~l~~~al~~L~~~~~gn~~~l~~~l~~l 203 (227)
T PRK08903 170 AAERGL----QLADEVPDYLLTHFRRDMPSLMALLDAL 203 (227)
T ss_pred HHHcCC----CCCHHHHHHHHHhccCCHHHHHHHHHHH
Confidence 422221 1224577888899999999887666554
No 78
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=98.28 E-value=3.1e-05 Score=75.87 Aligned_cols=91 Identities=11% Similarity=0.135 Sum_probs=65.1
Q ss_pred CCceEEEEeCCCCCCccChHHHHHhhcCCCCCcEEEEEcCCH-HHHHHh-CCCceEeCCCCChhhHHHHHHHHHhccCCc
Q 047321 209 GKKIFLVLDDVWDGDYKKWDPFFSCLKNGHHESKILITTHDR-SVALQL-GSIDIIPVKELGEGECWLLFKQIAFLRRSF 286 (807)
Q Consensus 209 ~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~IliTTR~~-~v~~~~-~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~ 286 (807)
+.+-++|+||+..-....++.+...+......+.+|++|++. .+...+ .....+++.+++.++..+.+.+. + -
T Consensus 95 ~~~kviiide~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~l~~~i~sr~~~~~~~~~~~~~~~~~l~~~--g--i- 169 (188)
T TIGR00678 95 SGRRVVIIEDAERMNEAAANALLKTLEEPPPNTLFILITPSPEKLLPTIRSRCQVLPFPPLSEEALLQWLIRQ--G--I- 169 (188)
T ss_pred CCeEEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhChHHHHhhcEEeeCCCCCHHHHHHHHHHc--C--C-
Confidence 567789999996655566777888887766667777777654 222222 22458999999999998888775 1 1
Q ss_pred cCccchHHHHHHHHHHcCCCHHH
Q 047321 287 EDCEKLEPIGRKIASKCKGLPLA 309 (807)
Q Consensus 287 ~~~~~~~~~~~~I~~~c~glPLa 309 (807)
..+.+..|++.++|.|..
T Consensus 170 -----~~~~~~~i~~~~~g~~r~ 187 (188)
T TIGR00678 170 -----SEEAAELLLALAGGSPGA 187 (188)
T ss_pred -----CHHHHHHHHHHcCCCccc
Confidence 145688999999998853
No 79
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=98.28 E-value=2.5e-05 Score=87.70 Aligned_cols=196 Identities=18% Similarity=0.195 Sum_probs=113.6
Q ss_pred CccccccchHHHHHHHHhCCCCCCCCCceEEEEEccCCChHHHHHHHHHcCcccccccceEEEEEeCCCCCHHHHHHHHH
Q 047321 104 GGVCGRVDEKNELLSKLLCGSSEQQKGLDVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSNTFEEISVAKAII 183 (807)
Q Consensus 104 ~~~vGR~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 183 (807)
.+++|++..++.+...+..+. -...+.++|+.|+||||+|+.+++...-.. |.... ....-...+.+.
T Consensus 16 ~dIIGQe~iv~~L~~aI~~~r-----l~hA~Lf~GP~GvGKTTlA~~lAk~L~C~~------~~~~~-~Cg~C~sCr~i~ 83 (605)
T PRK05896 16 KQIIGQELIKKILVNAILNNK-----LTHAYIFSGPRGIGKTSIAKIFAKAINCLN------PKDGD-CCNSCSVCESIN 83 (605)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-----CCceEEEECCCCCCHHHHHHHHHHHhcCCC------CCCCC-CCcccHHHHHHH
Confidence 468999999999999886432 346788999999999999999876211000 11100 111111111111
Q ss_pred HHcCCC--------CCCCccHHHHHHHHHHH-HhCCceEEEEeCCCCCCccChHHHHHhhcCCCCCcEEEEEcCC-HHHH
Q 047321 184 EGLGVS--------AFGLSEFESLMKQIQEY-ITGKKIFLVLDDVWDGDYKKWDPFFSCLKNGHHESKILITTHD-RSVA 253 (807)
Q Consensus 184 ~~l~~~--------~~~~~~~~~~~~~l~~~-l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~IliTTR~-~~v~ 253 (807)
...... ..+..+...+...+... ..+++-++|+|++..-....+..+...+......+.+|++|.. ..+.
T Consensus 84 ~~~h~DiieIdaas~igVd~IReIi~~~~~~P~~~~~KVIIIDEad~Lt~~A~NaLLKtLEEPp~~tvfIL~Tt~~~KLl 163 (605)
T PRK05896 84 TNQSVDIVELDAASNNGVDEIRNIIDNINYLPTTFKYKVYIIDEAHMLSTSAWNALLKTLEEPPKHVVFIFATTEFQKIP 163 (605)
T ss_pred cCCCCceEEeccccccCHHHHHHHHHHHHhchhhCCcEEEEEechHhCCHHHHHHHHHHHHhCCCcEEEEEECCChHhhh
Confidence 111000 01111122222222211 2244557999999765556677788887765556666555543 3333
Q ss_pred HH-hCCCceEeCCCCChhhHHHHHHHHHhccCCccCccchHHHHHHHHHHcCCCHH-HHHHHHH
Q 047321 254 LQ-LGSIDIIPVKELGEGECWLLFKQIAFLRRSFEDCEKLEPIGRKIASKCKGLPL-AAKVIGN 315 (807)
Q Consensus 254 ~~-~~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~~~~I~~~c~glPL-ai~~~~~ 315 (807)
.. ......+++.+++.++....+...+-..+.. --.+.+..+++.++|.+- |+..+-.
T Consensus 164 ~TI~SRcq~ieF~~Ls~~eL~~~L~~il~kegi~----Is~eal~~La~lS~GdlR~AlnlLek 223 (605)
T PRK05896 164 LTIISRCQRYNFKKLNNSELQELLKSIAKKEKIK----IEDNAIDKIADLADGSLRDGLSILDQ 223 (605)
T ss_pred HHHHhhhhhcccCCCCHHHHHHHHHHHHHHcCCC----CCHHHHHHHHHHcCCcHHHHHHHHHH
Confidence 22 2234689999999999999888876433221 124557889999999664 5555444
No 80
>PRK09087 hypothetical protein; Validated
Probab=98.28 E-value=1.3e-05 Score=80.45 Aligned_cols=142 Identities=14% Similarity=0.139 Sum_probs=89.1
Q ss_pred CceEEEEEccCCChHHHHHHHHHcCcccccccceEEEEEeCCCCCHHHHHHHHHHHcCCCCCCCccHHHHHHHHHHHHhC
Q 047321 130 GLDVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSNTFEEISVAKAIIEGLGVSAFGLSEFESLMKQIQEYITG 209 (807)
Q Consensus 130 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~ 209 (807)
..+.+.|+|+.|+|||+|++.++.... ..+++.. .+...++. .+.+
T Consensus 43 ~~~~l~l~G~~GsGKThLl~~~~~~~~-------~~~i~~~------~~~~~~~~---------------------~~~~ 88 (226)
T PRK09087 43 PSPVVVLAGPVGSGKTHLASIWREKSD-------ALLIHPN------EIGSDAAN---------------------AAAE 88 (226)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHhcC-------CEEecHH------HcchHHHH---------------------hhhc
Confidence 346799999999999999999886421 1133221 11111111 1111
Q ss_pred CceEEEEeCCCCCCccChHHHHHhhcCC-CCCcEEEEEcCC---------HHHHHHhCCCceEeCCCCChhhHHHHHHHH
Q 047321 210 KKIFLVLDDVWDGDYKKWDPFFSCLKNG-HHESKILITTHD---------RSVALQLGSIDIIPVKELGEGECWLLFKQI 279 (807)
Q Consensus 210 k~~LlVlDdv~~~~~~~~~~l~~~l~~~-~~gs~IliTTR~---------~~v~~~~~~~~~~~l~~L~~~~~~~Lf~~~ 279 (807)
-+|++||+.... ..-+.+...+... ..|..||+|++. ++....+.....+++++++.++-.+++.++
T Consensus 89 --~~l~iDDi~~~~-~~~~~lf~l~n~~~~~g~~ilits~~~p~~~~~~~~dL~SRl~~gl~~~l~~pd~e~~~~iL~~~ 165 (226)
T PRK09087 89 --GPVLIEDIDAGG-FDETGLFHLINSVRQAGTSLLMTSRLWPSSWNVKLPDLKSRLKAATVVEIGEPDDALLSQVIFKL 165 (226)
T ss_pred --CeEEEECCCCCC-CCHHHHHHHHHHHHhCCCeEEEECCCChHHhccccccHHHHHhCCceeecCCCCHHHHHHHHHHH
Confidence 378889995431 1123344444322 336679998873 344455556678999999999999999988
Q ss_pred HhccCCccCccchHHHHHHHHHHcCCCHHHHHH
Q 047321 280 AFLRRSFEDCEKLEPIGRKIASKCKGLPLAAKV 312 (807)
Q Consensus 280 a~~~~~~~~~~~~~~~~~~I~~~c~glPLai~~ 312 (807)
+-..+- .--+++...|++.+.|..-++..
T Consensus 166 ~~~~~~----~l~~ev~~~La~~~~r~~~~l~~ 194 (226)
T PRK09087 166 FADRQL----YVDPHVVYYLVSRMERSLFAAQT 194 (226)
T ss_pred HHHcCC----CCCHHHHHHHHHHhhhhHHHHHH
Confidence 844221 12256788899999888777664
No 81
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=98.27 E-value=2.2e-05 Score=83.89 Aligned_cols=196 Identities=14% Similarity=0.153 Sum_probs=117.5
Q ss_pred CCccccccchHHHHHHHHhCCCCCCCCCceEEEEEccCCChHHHHHHHHHcCccccc--ccceEEEEEeCCCCCHHHHHH
Q 047321 103 EGGVCGRVDEKNELLSKLLCGSSEQQKGLDVISLVGLGGIGKTTLAQLAYNNDEVKR--NFEKVIWVCVSNTFEEISVAK 180 (807)
Q Consensus 103 ~~~~vGR~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~--~f~~~~wv~~~~~~~~~~~~~ 180 (807)
-.+++|.++..+.+...+..+. -...+.|+|+.|+||||+|..+....--.. .+... ............+
T Consensus 22 ~~~l~Gh~~a~~~L~~a~~~gr-----l~ha~L~~G~~G~GKttlA~~lA~~Llc~~~~~~~~~---~~~~~~~~c~~c~ 93 (351)
T PRK09112 22 NTRLFGHEEAEAFLAQAYREGK-----LHHALLFEGPEGIGKATLAFHLANHILSHPDPAEAPE---TLADPDPASPVWR 93 (351)
T ss_pred hhhccCcHHHHHHHHHHHHcCC-----CCeeEeeECCCCCCHHHHHHHHHHHHcCCCccccCcc---ccCCCCCCCHHHH
Confidence 3579999999999999997532 355789999999999999998865211100 01100 0000111111233
Q ss_pred HHHHHcC-------CC--C-----CCCccHHHHHHHHHHHH-----hCCceEEEEeCCCCCCccChHHHHHhhcCCCCCc
Q 047321 181 AIIEGLG-------VS--A-----FGLSEFESLMKQIQEYI-----TGKKIFLVLDDVWDGDYKKWDPFFSCLKNGHHES 241 (807)
Q Consensus 181 ~i~~~l~-------~~--~-----~~~~~~~~~~~~l~~~l-----~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs 241 (807)
.|...-. .. . ......+++ +.+.+++ .+++-++|+|++..-+......+...+.....+.
T Consensus 94 ~i~~~~hPdl~~l~~~~~~~~~~~~~~I~vd~i-R~l~~~l~~~~~~g~~rVviIDeAd~l~~~aanaLLk~LEEpp~~~ 172 (351)
T PRK09112 94 QIAQGAHPNLLHITRPFDEKTGKFKTAITVDEI-RRVGHFLSQTSGDGNWRIVIIDPADDMNRNAANAILKTLEEPPARA 172 (351)
T ss_pred HHHcCCCCCEEEeecccccccccccccCCHHHH-HHHHHHhhhccccCCceEEEEEchhhcCHHHHHHHHHHHhcCCCCc
Confidence 3322210 00 0 011123333 2344443 3567799999997777777777888887655556
Q ss_pred EEEEEcCCH-HHHHHh-CCCceEeCCCCChhhHHHHHHHHHhccCCccCccchHHHHHHHHHHcCCCHHHHHHH
Q 047321 242 KILITTHDR-SVALQL-GSIDIIPVKELGEGECWLLFKQIAFLRRSFEDCEKLEPIGRKIASKCKGLPLAAKVI 313 (807)
Q Consensus 242 ~IliTTR~~-~v~~~~-~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~~~~I~~~c~glPLai~~~ 313 (807)
.+|++|... .+...+ .-...+.+.+++.++...++.+.... . . -..+.+..|++.++|.|..+..+
T Consensus 173 ~fiLit~~~~~llptIrSRc~~i~l~pl~~~~~~~~L~~~~~~--~---~-~~~~~~~~i~~~s~G~pr~Al~l 240 (351)
T PRK09112 173 LFILISHSSGRLLPTIRSRCQPISLKPLDDDELKKALSHLGSS--Q---G-SDGEITEALLQRSKGSVRKALLL 240 (351)
T ss_pred eEEEEECChhhccHHHHhhccEEEecCCCHHHHHHHHHHhhcc--c---C-CCHHHHHHHHHHcCCCHHHHHHH
Confidence 655555544 332222 22468999999999999999874311 1 1 12345678999999999866544
No 82
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=98.26 E-value=4.8e-05 Score=77.53 Aligned_cols=203 Identities=18% Similarity=0.179 Sum_probs=124.7
Q ss_pred Ccccccc---chHHHHHHHHhCCCCCCCCCceEEEEEccCCChHHHHHHHHHcCcccc----cccceEEEEEeCCCCCHH
Q 047321 104 GGVCGRV---DEKNELLSKLLCGSSEQQKGLDVISLVGLGGIGKTTLAQLAYNNDEVK----RNFEKVIWVCVSNTFEEI 176 (807)
Q Consensus 104 ~~~vGR~---~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~----~~f~~~~wv~~~~~~~~~ 176 (807)
+.+||.. +.++++.++|..+. ....+.+.|||.+|.|||++++.+...--.. ..--.++.|......+..
T Consensus 34 ~rWIgY~~A~~~L~~L~~Ll~~P~---~~Rmp~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~vq~P~~p~~~ 110 (302)
T PF05621_consen 34 DRWIGYPRAKEALDRLEELLEYPK---RHRMPNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYVQMPPEPDER 110 (302)
T ss_pred CCeecCHHHHHHHHHHHHHHhCCc---ccCCCceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEEecCCCCChH
Confidence 4566653 45677777777654 4567889999999999999999987521111 011146677888889999
Q ss_pred HHHHHHHHHcCCCCCCCccHHHHHHHHHHHHhC-CceEEEEeCCCCC---CccChHHHHHhhc---CCCCCcEEEEEcCC
Q 047321 177 SVAKAIIEGLGVSAFGLSEFESLMKQIQEYITG-KKIFLVLDDVWDG---DYKKWDPFFSCLK---NGHHESKILITTHD 249 (807)
Q Consensus 177 ~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~-k~~LlVlDdv~~~---~~~~~~~l~~~l~---~~~~gs~IliTTR~ 249 (807)
.++..|+..++...........+...+.+.++. +--+||+|++.+- ...+-..+...+. +.-.-+-|.+-|++
T Consensus 111 ~~Y~~IL~~lgaP~~~~~~~~~~~~~~~~llr~~~vrmLIIDE~H~lLaGs~~~qr~~Ln~LK~L~NeL~ipiV~vGt~~ 190 (302)
T PF05621_consen 111 RFYSAILEALGAPYRPRDRVAKLEQQVLRLLRRLGVRMLIIDEFHNLLAGSYRKQREFLNALKFLGNELQIPIVGVGTRE 190 (302)
T ss_pred HHHHHHHHHhCcccCCCCCHHHHHHHHHHHHHHcCCcEEEeechHHHhcccHHHHHHHHHHHHHHhhccCCCeEEeccHH
Confidence 999999999998876666666666666666654 5568899999652 2222233333333 22334555665654
Q ss_pred HHHHHHhC-----CCceEeCCCCChhhH-HHHHHHHH--hccCCccCccchHHHHHHHHHHcCCCHHHH
Q 047321 250 RSVALQLG-----SIDIIPVKELGEGEC-WLLFKQIA--FLRRSFEDCEKLEPIGRKIASKCKGLPLAA 310 (807)
Q Consensus 250 ~~v~~~~~-----~~~~~~l~~L~~~~~-~~Lf~~~a--~~~~~~~~~~~~~~~~~~I~~~c~glPLai 310 (807)
---+-..+ -...+.++....++- ..|+.... +.-.. ...-...++++.|...++|+.=-+
T Consensus 191 A~~al~~D~QLa~RF~~~~Lp~W~~d~ef~~LL~s~e~~LPLr~-~S~l~~~~la~~i~~~s~G~iG~l 258 (302)
T PF05621_consen 191 AYRALRTDPQLASRFEPFELPRWELDEEFRRLLASFERALPLRK-PSNLASPELARRIHERSEGLIGEL 258 (302)
T ss_pred HHHHhccCHHHHhccCCccCCCCCCCcHHHHHHHHHHHhCCCCC-CCCCCCHHHHHHHHHHcCCchHHH
Confidence 32221111 123566666665544 44443321 11111 122334678999999999986443
No 83
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.26 E-value=1.7e-05 Score=86.98 Aligned_cols=198 Identities=15% Similarity=0.169 Sum_probs=112.5
Q ss_pred CccccccchHHHHHHHHhCCCCCCCCCceEEEEEccCCChHHHHHHHHHcCcccccccceEEEEE-eCCCCCHHHHHHHH
Q 047321 104 GGVCGRVDEKNELLSKLLCGSSEQQKGLDVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVC-VSNTFEEISVAKAI 182 (807)
Q Consensus 104 ~~~vGR~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~-~~~~~~~~~~~~~i 182 (807)
.+++|.+..++.|..++..+. -...+.++|+.|+||||+|..+++...-...++...|.. .......-...+.+
T Consensus 16 ~eiiGq~~~~~~L~~~~~~~~-----~~ha~lf~Gp~G~GKtt~A~~~a~~l~c~~~~~~~~~~~~~~~~c~~c~~c~~~ 90 (397)
T PRK14955 16 ADITAQEHITRTIQNSLRMGR-----VGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDADYLQEVTEPCGECESCRDF 90 (397)
T ss_pred hhccChHHHHHHHHHHHHhCC-----cceeEEEECCCCCCHHHHHHHHHHHhcCCCCcCcccccccCCCCCCCCHHHHHH
Confidence 468999988888888886421 234588999999999999999876321111110000110 00111111111122
Q ss_pred HHHcCCC-----CCCCccHHHHHHHHHHHH-----hCCceEEEEeCCCCCCccChHHHHHhhcCCCCCcEEEEEc-CCHH
Q 047321 183 IEGLGVS-----AFGLSEFESLMKQIQEYI-----TGKKIFLVLDDVWDGDYKKWDPFFSCLKNGHHESKILITT-HDRS 251 (807)
Q Consensus 183 ~~~l~~~-----~~~~~~~~~~~~~l~~~l-----~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~IliTT-R~~~ 251 (807)
......+ .......+++.+ +.+.+ .+++-++|+||+..-....++.+...+....+.+.+|++| +...
T Consensus 91 ~~~~~~n~~~~~~~~~~~id~Ir~-l~~~~~~~p~~~~~kvvIIdea~~l~~~~~~~LLk~LEep~~~t~~Il~t~~~~k 169 (397)
T PRK14955 91 DAGTSLNISEFDAASNNSVDDIRL-LRENVRYGPQKGRYRVYIIDEVHMLSIAAFNAFLKTLEEPPPHAIFIFATTELHK 169 (397)
T ss_pred hcCCCCCeEeecccccCCHHHHHH-HHHHHhhchhcCCeEEEEEeChhhCCHHHHHHHHHHHhcCCCCeEEEEEeCChHH
Confidence 1111100 001111233322 22222 3566789999996655567788888887666667666555 3333
Q ss_pred HHHHhC-CCceEeCCCCChhhHHHHHHHHHhccCCccCccchHHHHHHHHHHcCCCHHHHH
Q 047321 252 VALQLG-SIDIIPVKELGEGECWLLFKQIAFLRRSFEDCEKLEPIGRKIASKCKGLPLAAK 311 (807)
Q Consensus 252 v~~~~~-~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~~~~I~~~c~glPLai~ 311 (807)
+...+. ....+++.++++++....+...+-..+. .--.+.+..|++.++|.+--+.
T Consensus 170 l~~tl~sR~~~v~f~~l~~~ei~~~l~~~~~~~g~----~i~~~al~~l~~~s~g~lr~a~ 226 (397)
T PRK14955 170 IPATIASRCQRFNFKRIPLEEIQQQLQGICEAEGI----SVDADALQLIGRKAQGSMRDAQ 226 (397)
T ss_pred hHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHcCC----CCCHHHHHHHHHHcCCCHHHHH
Confidence 432221 1357899999999998888876633221 1224568899999999875443
No 84
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.25 E-value=2.8e-06 Score=90.45 Aligned_cols=119 Identities=21% Similarity=0.306 Sum_probs=72.8
Q ss_pred hccCCCCCCeEEEEeeccCCCcchhhhhchhhHHHHHHhhcCCCCCCCCCCCcc--cceEeccCCcCceeeCcccCCCCC
Q 047321 581 QLYNQQNLLRLRLRFGRVVDGEDEERRRKNEKDKQLLEALQPPLSHLPPLGKLP--LKKLELRDLESVKRVGNEFLGIEE 658 (807)
Q Consensus 581 ~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~l~p~~~~lp~l~~L~--L~~L~L~~~~~l~~i~~~~~~~~~ 658 (807)
.+..+.++..|+++.|.+ ..+| .+| |+.|.+++|..++.++..
T Consensus 47 r~~~~~~l~~L~Is~c~L--------------------------~sLP---~LP~sLtsL~Lsnc~nLtsLP~~------ 91 (426)
T PRK15386 47 QIEEARASGRLYIKDCDI--------------------------ESLP---VLPNELTEITIENCNNLTTLPGS------ 91 (426)
T ss_pred HHHHhcCCCEEEeCCCCC--------------------------cccC---CCCCCCcEEEccCCCCcccCCch------
Confidence 466778999999997764 4566 466 999999999888776642
Q ss_pred CCCCCCCCCCCCCccccCcccccccccCCCccccchhhhccccCCCCCCcccEEEEcc--CCCCCCCcccccCC------
Q 047321 659 SSEDDPSSSSSSPSVIAFPKLKSLEIDGMKELEEWNYRITRKENISIMPRLSSLQIMN--CRKLKALPDYLLQT------ 730 (807)
Q Consensus 659 l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~l~~L~~L~l~~--c~~L~~lp~~l~~l------ 730 (807)
-.++|+.|.+++|.++..+|. +|+.|.+.. |..+..+|.++..|
T Consensus 92 ----------------LP~nLe~L~Ls~Cs~L~sLP~------------sLe~L~L~~n~~~~L~~LPssLk~L~I~~~n 143 (426)
T PRK15386 92 ----------------IPEGLEKLTVCHCPEISGLPE------------SVRSLEIKGSATDSIKNVPNGLTSLSINSYN 143 (426)
T ss_pred ----------------hhhhhhheEccCccccccccc------------ccceEEeCCCCCcccccCcchHhheeccccc
Confidence 124677777777766655543 344444432 23345555443222
Q ss_pred ------------CCccEEeeccCcccccccccccccCCCCCCCCeeeeccC
Q 047321 731 ------------IALQKLSIYSCDLLEELPILEDRRTTDIPRLSSLAIWYC 769 (807)
Q Consensus 731 ------------~~L~~L~l~~c~~l~~lP~~~~~~~~~l~~L~~L~i~~c 769 (807)
++|++|.+++|..+ .+| .. -..+|+.|.++.+
T Consensus 144 ~~~~~~lp~~LPsSLk~L~Is~c~~i-~LP----~~--LP~SLk~L~ls~n 187 (426)
T PRK15386 144 PENQARIDNLISPSLKTLSLTGCSNI-ILP----EK--LPESLQSITLHIE 187 (426)
T ss_pred cccccccccccCCcccEEEecCCCcc-cCc----cc--ccccCcEEEeccc
Confidence 36777777777644 233 11 1246677776543
No 85
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=98.25 E-value=3.1e-05 Score=83.93 Aligned_cols=180 Identities=11% Similarity=0.063 Sum_probs=109.6
Q ss_pred CccccccchHHHHHHHHhCCCCC----CCCCceEEEEEccCCChHHHHHHHHHcCcccc------------------ccc
Q 047321 104 GGVCGRVDEKNELLSKLLCGSSE----QQKGLDVISLVGLGGIGKTTLAQLAYNNDEVK------------------RNF 161 (807)
Q Consensus 104 ~~~vGR~~~~~~l~~~L~~~~~~----~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~------------------~~f 161 (807)
.+++|-+..++.|...+..+... ...-..-+.++|+.|+|||++|+.++....-. ..+
T Consensus 5 ~~IiGq~~~~~~L~~~i~~~~~~~~~~~~~l~ha~Lf~Gp~G~GKt~lA~~lA~~l~c~~~~~~~Cg~C~~C~~~~~~~h 84 (394)
T PRK07940 5 DDLVGQEAVVAELRAAARAARADVAAAGSGMTHAWLFTGPPGSGRSVAARAFAAALQCTDPDEPGCGECRACRTVLAGTH 84 (394)
T ss_pred hhccChHHHHHHHHHHHHhccccccccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCC
Confidence 36899999999999999754310 00134568899999999999999886521000 001
Q ss_pred ceEEEEEeCCCCCHHHHHHHHHHHcCCCCCCCccHHHHHHHHHHHH-----hCCceEEEEeCCCCCCccChHHHHHhhcC
Q 047321 162 EKVIWVCVSNTFEEISVAKAIIEGLGVSAFGLSEFESLMKQIQEYI-----TGKKIFLVLDDVWDGDYKKWDPFFSCLKN 236 (807)
Q Consensus 162 ~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l-----~~k~~LlVlDdv~~~~~~~~~~l~~~l~~ 236 (807)
+-..++.... .....+++. .+.+.. .+++-++|+|++..-+......+...+..
T Consensus 85 pD~~~i~~~~--------------------~~i~i~~iR-~l~~~~~~~p~~~~~kViiIDead~m~~~aanaLLk~LEe 143 (394)
T PRK07940 85 PDVRVVAPEG--------------------LSIGVDEVR-ELVTIAARRPSTGRWRIVVIEDADRLTERAANALLKAVEE 143 (394)
T ss_pred CCEEEecccc--------------------ccCCHHHHH-HHHHHHHhCcccCCcEEEEEechhhcCHHHHHHHHHHhhc
Confidence 1111111100 011122222 122221 34566888999977666666667777776
Q ss_pred CCCCcEEEEEcCCH-HHHHHh-CCCceEeCCCCChhhHHHHHHHHHhccCCccCccchHHHHHHHHHHcCCCHHHHHHH
Q 047321 237 GHHESKILITTHDR-SVALQL-GSIDIIPVKELGEGECWLLFKQIAFLRRSFEDCEKLEPIGRKIASKCKGLPLAAKVI 313 (807)
Q Consensus 237 ~~~gs~IliTTR~~-~v~~~~-~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~~~~I~~~c~glPLai~~~ 313 (807)
...++.+|++|.+. .+...+ .-...+.+.+++.++..+.+.+.. + . ..+.+..+++.++|.|.....+
T Consensus 144 p~~~~~fIL~a~~~~~llpTIrSRc~~i~f~~~~~~~i~~~L~~~~---~---~---~~~~a~~la~~s~G~~~~A~~l 213 (394)
T PRK07940 144 PPPRTVWLLCAPSPEDVLPTIRSRCRHVALRTPSVEAVAEVLVRRD---G---V---DPETARRAARASQGHIGRARRL 213 (394)
T ss_pred CCCCCeEEEEECChHHChHHHHhhCeEEECCCCCHHHHHHHHHHhc---C---C---CHHHHHHHHHHcCCCHHHHHHH
Confidence 66677777777664 333222 224689999999999988887432 1 1 1345788999999999755443
No 86
>COG3903 Predicted ATPase [General function prediction only]
Probab=98.25 E-value=3.9e-06 Score=87.75 Aligned_cols=268 Identities=21% Similarity=0.205 Sum_probs=167.2
Q ss_pred CceEEEEEccCCChHHHHHHHHHcCcccccccceEE-EEEeCCCCCHHHHHHHHHHHcCCCCCCCccHHHHHHHHHHHHh
Q 047321 130 GLDVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVI-WVCVSNTFEEISVAKAIIEGLGVSAFGLSEFESLMKQIQEYIT 208 (807)
Q Consensus 130 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~-wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 208 (807)
..+.+.++|.|||||||++-.+.. +..-|.... ++....-.+...+.-.+...++..... .+.....+...+.
T Consensus 13 ~~RlvtL~g~ggvgkttl~~~~a~---~~~~~~~~v~~vdl~pitD~~~v~~~~ag~~gl~~~~---g~~~~~~~~~~~~ 86 (414)
T COG3903 13 ALRLVTLTGAGGVGKTTLALQAAH---AASEYADGVAFVDLAPITDPALVFPTLAGALGLHVQP---GDSAVDTLVRRIG 86 (414)
T ss_pred hhheeeeeccCccceehhhhhhHh---HhhhcccceeeeeccccCchhHhHHHHHhhccccccc---chHHHHHHHHHHh
Confidence 568899999999999999988886 445565444 444444445554444444445544322 1233445666778
Q ss_pred CCceEEEEeCCCCCCccChHHHHHhhcCCCCCcEEEEEcCCHHHHHHhCCCceEeCCCCChh-hHHHHHHHHHhccCCc-
Q 047321 209 GKKIFLVLDDVWDGDYKKWDPFFSCLKNGHHESKILITTHDRSVALQLGSIDIIPVKELGEG-ECWLLFKQIAFLRRSF- 286 (807)
Q Consensus 209 ~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~IliTTR~~~v~~~~~~~~~~~l~~L~~~-~~~~Lf~~~a~~~~~~- 286 (807)
+++.++|+||...- ...-..+...+..+.+.-.|+.|+|..-. ........+..|+.. ++.++|...+......
T Consensus 87 ~rr~llvldncehl-~~~~a~~i~all~~~~~~~~~atsre~~l---~~ge~~~~~~~L~~~d~a~~lf~~ra~~~~~~f 162 (414)
T COG3903 87 DRRALLVLDNCEHL-LDACAALIVALLGACPRLAILATSREAIL---VAGEVHRRVPSLSLFDEAIELFVCRAVLVALSF 162 (414)
T ss_pred hhhHHHHhcCcHHH-HHHHHHHHHHHHccchhhhhHHHhHhhhc---ccccccccCCccccCCchhHHHHHHHHHhccce
Confidence 89999999997211 11122244445555566678888886532 233456778888865 7899998887543322
Q ss_pred cCccchHHHHHHHHHHcCCCHHHHHHHHHHhhcCCCHHHHHHHHhccccccccC-------CCCchhhHHhcccCCCCcc
Q 047321 287 EDCEKLEPIGRKIASKCKGLPLAAKVIGNLLRSKNTAKEWHIILDSEMWKVQEI-------GQGILAPLLLSYNDLPSNS 359 (807)
Q Consensus 287 ~~~~~~~~~~~~I~~~c~glPLai~~~~~~l~~~~~~~~w~~~~~~~~~~~~~~-------~~~i~~~l~lsy~~L~~~~ 359 (807)
.........+..|.++.+|.|++|..+++..+.-. .++-..-++.....+... .....+.+.+||.-|..
T Consensus 163 ~l~~~~~a~v~~icr~ldg~~laielaaarv~sl~-~~~i~~~L~drf~ll~~~~r~a~~~~qtl~asl~ws~~lLtg-- 239 (414)
T COG3903 163 WLTDDNAAAVAEICRRLDGIPLAIELAAARVRSLS-PDEIAAGLRDRFRLLTGGARLAVLRQQTLRASLDWSYALLTG-- 239 (414)
T ss_pred eecCCchHHHHHHHHHhhcchHHHHHHHHHHHhcC-HHHHHHHHhhHHHHHhcccccchhHHHhccchhhhhhHhhhh--
Confidence 12234456789999999999999999999887652 233333333222222211 13467889999999999
Q ss_pred chhhhhhhhccCCCcceechhHHHHHHHhcCCCCCCCCchHHHHHHHHHHHHhhcCCcc
Q 047321 360 MVKRCFSYCAVFPKDYNMNKRELINLWMTQGYLNADEDEEMEMIGEEYFNILATRSFFQ 418 (807)
Q Consensus 360 ~~k~cfl~~s~fp~~~~i~~~~li~~W~aeg~i~~~~~~~~e~~~~~~~~~L~~rsll~ 418 (807)
..+--|--++.|...+... ...|.+-|-... ......-..+..|++.+++-
T Consensus 240 we~~~~~rLa~~~g~f~~~----l~~~~a~g~~~~----~~~y~~~~a~~ll~~kslv~ 290 (414)
T COG3903 240 WERALFGRLAVFVGGFDLG----LALAVAAGADVD----VPRYLVLLALTLLVDKSLVV 290 (414)
T ss_pred HHHHHhcchhhhhhhhccc----HHHHHhcCCccc----cchHHHHHHHHHHhhccchh
Confidence 7888899999997776544 234544432210 01112233356677777764
No 87
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=98.24 E-value=3.9e-05 Score=76.74 Aligned_cols=184 Identities=13% Similarity=0.161 Sum_probs=105.2
Q ss_pred ccccc-chHHHHHHHHhCCCCCCCCCceEEEEEccCCChHHHHHHHHHcCccccccc-c-eEEEEEeCCCCCHHHHHHHH
Q 047321 106 VCGRV-DEKNELLSKLLCGSSEQQKGLDVISLVGLGGIGKTTLAQLAYNNDEVKRNF-E-KVIWVCVSNTFEEISVAKAI 182 (807)
Q Consensus 106 ~vGR~-~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f-~-~~~wv~~~~~~~~~~~~~~i 182 (807)
++|.. +..-.....+.... +.....+.|+|+.|+|||.|++.+++. ..+.. . .+++++ ..++...+
T Consensus 11 v~g~~N~~a~~~~~~ia~~~---~~~~~~l~l~G~~G~GKTHLL~Ai~~~--~~~~~~~~~v~y~~------~~~f~~~~ 79 (219)
T PF00308_consen 11 VVGESNELAYAAAKAIAENP---GERYNPLFLYGPSGLGKTHLLQAIANE--AQKQHPGKRVVYLS------AEEFIREF 79 (219)
T ss_dssp --TTTTHHHHHHHHHHHHST---TTSSSEEEEEESTTSSHHHHHHHHHHH--HHHHCTTS-EEEEE------HHHHHHHH
T ss_pred CcCCcHHHHHHHHHHHHhcC---CCCCCceEEECCCCCCHHHHHHHHHHH--HHhccccccceeec------HHHHHHHH
Confidence 45653 33334444444332 224556899999999999999999983 33222 2 345553 44555555
Q ss_pred HHHcCCCCCCCccHHHHHHHHHHHHhCCceEEEEeCCCCC-CccChHH-HHHhhcCC-CCCcEEEEEcCCH---------
Q 047321 183 IEGLGVSAFGLSEFESLMKQIQEYITGKKIFLVLDDVWDG-DYKKWDP-FFSCLKNG-HHESKILITTHDR--------- 250 (807)
Q Consensus 183 ~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~-~~~~~~~-l~~~l~~~-~~gs~IliTTR~~--------- 250 (807)
...+... .. ..+...++ .--+|++||++.- ....|+. +...+... ..|.+||+|++..
T Consensus 80 ~~~~~~~-----~~----~~~~~~~~-~~DlL~iDDi~~l~~~~~~q~~lf~l~n~~~~~~k~li~ts~~~P~~l~~~~~ 149 (219)
T PF00308_consen 80 ADALRDG-----EI----EEFKDRLR-SADLLIIDDIQFLAGKQRTQEELFHLFNRLIESGKQLILTSDRPPSELSGLLP 149 (219)
T ss_dssp HHHHHTT-----SH----HHHHHHHC-TSSEEEEETGGGGTTHHHHHHHHHHHHHHHHHTTSEEEEEESS-TTTTTTS-H
T ss_pred HHHHHcc-----cc----hhhhhhhh-cCCEEEEecchhhcCchHHHHHHHHHHHHHHhhCCeEEEEeCCCCccccccCh
Confidence 5554331 11 22333444 4568889999553 2233444 44444322 3566899999642
Q ss_pred HHHHHhCCCceEeCCCCChhhHHHHHHHHHhccCCccCccchHHHHHHHHHHcCCCHHHHHHHH
Q 047321 251 SVALQLGSIDIIPVKELGEGECWLLFKQIAFLRRSFEDCEKLEPIGRKIASKCKGLPLAAKVIG 314 (807)
Q Consensus 251 ~v~~~~~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~~~~I~~~c~glPLai~~~~ 314 (807)
+....+...-.++++++++++...++.+.+-..+-. --++++.-|++.+.+..-.+..+-
T Consensus 150 ~L~SRl~~Gl~~~l~~pd~~~r~~il~~~a~~~~~~----l~~~v~~~l~~~~~~~~r~L~~~l 209 (219)
T PF00308_consen 150 DLRSRLSWGLVVELQPPDDEDRRRILQKKAKERGIE----LPEEVIEYLARRFRRDVRELEGAL 209 (219)
T ss_dssp HHHHHHHCSEEEEE----HHHHHHHHHHHHHHTT------S-HHHHHHHHHHTTSSHHHHHHHH
T ss_pred hhhhhHhhcchhhcCCCCHHHHHHHHHHHHHHhCCC----CcHHHHHHHHHhhcCCHHHHHHHH
Confidence 333444455689999999999999999988544331 235677888888887766655443
No 88
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.24 E-value=3.3e-08 Score=105.67 Aligned_cols=132 Identities=23% Similarity=0.381 Sum_probs=106.9
Q ss_pred CCCcc-cceEeccCCcCceeeCcccCCCCCCCCCCCCCCCCCCccccCcccccccccCCCccccchhhhccccCCCCCCc
Q 047321 630 LGKLP-LKKLELRDLESVKRVGNEFLGIEESSEDDPSSSSSSPSVIAFPKLKSLEIDGMKELEEWNYRITRKENISIMPR 708 (807)
Q Consensus 630 l~~L~-L~~L~L~~~~~l~~i~~~~~~~~~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~l~~ 708 (807)
+.+|. |.+|+|+. +.+..+|..++ .+ -|+.|.+++ ++++.+|. +++..+.
T Consensus 117 i~~L~~lt~l~ls~-NqlS~lp~~lC--------------------~l-pLkvli~sN-Nkl~~lp~------~ig~~~t 167 (722)
T KOG0532|consen 117 ICNLEALTFLDLSS-NQLSHLPDGLC--------------------DL-PLKVLIVSN-NKLTSLPE------EIGLLPT 167 (722)
T ss_pred hhhhhHHHHhhhcc-chhhcCChhhh--------------------cC-cceeEEEec-CccccCCc------ccccchh
Confidence 66777 77777765 34555554432 33 388999988 68888876 5568899
Q ss_pred ccEEEEccCCCCCCCcccccCCCCccEEeeccCcccccccccccccCCCCCCCCeeeeccCCCcccCCccCCCCCccccc
Q 047321 709 LSSLQIMNCRKLKALPDYLLQTIALQKLSIYSCDLLEELPILEDRRTTDIPRLSSLAIWYCPKLKVLPDYLLRTTTLQAG 788 (807)
Q Consensus 709 L~~L~l~~c~~L~~lp~~l~~l~~L~~L~l~~c~~l~~lP~~~~~~~~~l~~L~~L~i~~c~~l~~lP~~l~~l~~L~~L 788 (807)
|..|+.+.| ++.++|..++++.+|+.|.+.. +.+..+| ..++.|+ |..|+++ |+++..||-.+.+++.|++|
T Consensus 168 l~~ld~s~n-ei~slpsql~~l~slr~l~vrR-n~l~~lp----~El~~Lp-Li~lDfS-cNkis~iPv~fr~m~~Lq~l 239 (722)
T KOG0532|consen 168 LAHLDVSKN-EIQSLPSQLGYLTSLRDLNVRR-NHLEDLP----EELCSLP-LIRLDFS-CNKISYLPVDFRKMRHLQVL 239 (722)
T ss_pred HHHhhhhhh-hhhhchHHhhhHHHHHHHHHhh-hhhhhCC----HHHhCCc-eeeeecc-cCceeecchhhhhhhhheee
Confidence 999999988 8999999999999999999998 5788888 6666554 7889998 79999999999999999999
Q ss_pred ccccchhhhh
Q 047321 789 EQDYENEKFS 798 (807)
Q Consensus 789 ~l~~~~~~~~ 798 (807)
-|.+|+++-+
T Consensus 240 ~LenNPLqSP 249 (722)
T KOG0532|consen 240 QLENNPLQSP 249 (722)
T ss_pred eeccCCCCCC
Confidence 9999999754
No 89
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=98.20 E-value=3.4e-06 Score=88.83 Aligned_cols=101 Identities=16% Similarity=0.103 Sum_probs=68.3
Q ss_pred HHHHHHHhCCCCCCCCCceEEEEEccCCChHHHHHHHHHcCcccccccceEEEEEeCCCC--CHHHHHHHHHHHcCCCCC
Q 047321 114 NELLSKLLCGSSEQQKGLDVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSNTF--EEISVAKAIIEGLGVSAF 191 (807)
Q Consensus 114 ~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~--~~~~~~~~i~~~l~~~~~ 191 (807)
-++++.+..- +.-....|+|++|+||||||+.+|++.... +|+.++||.+.+.+ ++.++++.|...+-....
T Consensus 157 ~rvID~l~PI-----GkGQR~lIvgppGvGKTTLaK~Ian~I~~n-hFDv~~~VvLIgER~~EVtdiqrsIlg~vv~st~ 230 (416)
T PRK09376 157 TRIIDLIAPI-----GKGQRGLIVAPPKAGKTVLLQNIANSITTN-HPEVHLIVLLIDERPEEVTDMQRSVKGEVVASTF 230 (416)
T ss_pred eeeeeeeccc-----ccCceEEEeCCCCCChhHHHHHHHHHHHhh-cCCeEEEEEEeCCchhHHHHHHHHhcCcEEEECC
Confidence 3566666542 355678999999999999999999964443 89999999999887 777788877643322222
Q ss_pred CCccHHHH-----HHHHHHH--HhCCceEEEEeCCC
Q 047321 192 GLSEFESL-----MKQIQEY--ITGKKIFLVLDDVW 220 (807)
Q Consensus 192 ~~~~~~~~-----~~~l~~~--l~~k~~LlVlDdv~ 220 (807)
+....... .-...++ -.|++.+|++|++.
T Consensus 231 d~~~~~~~~~a~~~ie~Ae~~~e~G~dVlL~iDsIt 266 (416)
T PRK09376 231 DEPAERHVQVAEMVIEKAKRLVEHGKDVVILLDSIT 266 (416)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEEEChH
Confidence 22211111 1112222 25899999999994
No 90
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.18 E-value=3.4e-05 Score=87.36 Aligned_cols=183 Identities=15% Similarity=0.164 Sum_probs=111.4
Q ss_pred CccccccchHHHHHHHHhCCCCCCCCCceEEEEEccCCChHHHHHHHHHcCccccc-------------------ccceE
Q 047321 104 GGVCGRVDEKNELLSKLLCGSSEQQKGLDVISLVGLGGIGKTTLAQLAYNNDEVKR-------------------NFEKV 164 (807)
Q Consensus 104 ~~~vGR~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~-------------------~f~~~ 164 (807)
.++||.+..++.+..++.... -...+.++|+.|+||||+|+.+........ .|.-.
T Consensus 16 ~divGq~~v~~~L~~~i~~~~-----~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pcg~C~~C~~i~~~~~~d~ 90 (527)
T PRK14969 16 SELVGQEHVVRALTNALEQQR-----LHHAYLFTGTRGVGKTTLARILAKSLNCETGVTATPCGVCSACLEIDSGRFVDL 90 (527)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-----CCEEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCce
Confidence 468999999999999887432 345678999999999999999875311100 01111
Q ss_pred EEEEeCCCCCHHHHHHHHHHHcCCCCCCCccHHHHHHHHHHH----HhCCceEEEEeCCCCCCccChHHHHHhhcCCCCC
Q 047321 165 IWVCVSNTFEEISVAKAIIEGLGVSAFGLSEFESLMKQIQEY----ITGKKIFLVLDDVWDGDYKKWDPFFSCLKNGHHE 240 (807)
Q Consensus 165 ~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~----l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~g 240 (807)
+++..... ...+++...+... ..+++-++|+|++..-.......+...+......
T Consensus 91 ~ei~~~~~---------------------~~vd~ir~l~~~~~~~p~~~~~kVvIIDEad~ls~~a~naLLK~LEepp~~ 149 (527)
T PRK14969 91 IEVDAASN---------------------TQVDAMRELLDNAQYAPTRGRFKVYIIDEVHMLSKSAFNAMLKTLEEPPEH 149 (527)
T ss_pred eEeecccc---------------------CCHHHHHHHHHHHhhCcccCCceEEEEcCcccCCHHHHHHHHHHHhCCCCC
Confidence 12211111 1122222111111 1356779999999766655667788888776556
Q ss_pred cEEEEEcCCH-HHHHH-hCCCceEeCCCCChhhHHHHHHHHHhccCCccCccchHHHHHHHHHHcCCCHH-HHHHHHHH
Q 047321 241 SKILITTHDR-SVALQ-LGSIDIIPVKELGEGECWLLFKQIAFLRRSFEDCEKLEPIGRKIASKCKGLPL-AAKVIGNL 316 (807)
Q Consensus 241 s~IliTTR~~-~v~~~-~~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~~~~I~~~c~glPL-ai~~~~~~ 316 (807)
+.+|++|.+. .+... ..-...+++++++.++....+.+.+-..+. ....+....|++.++|.+- |+..+-.+
T Consensus 150 ~~fIL~t~d~~kil~tI~SRc~~~~f~~l~~~~i~~~L~~il~~egi----~~~~~al~~la~~s~Gslr~al~lldqa 224 (527)
T PRK14969 150 VKFILATTDPQKIPVTVLSRCLQFNLKQMPPPLIVSHLQHILEQENI----PFDATALQLLARAAAGSMRDALSLLDQA 224 (527)
T ss_pred EEEEEEeCChhhCchhHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCC----CCCHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 6666666443 22211 111457899999999999888876643322 1124556889999999875 44444333
No 91
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=98.17 E-value=7e-05 Score=85.47 Aligned_cols=197 Identities=15% Similarity=0.145 Sum_probs=116.4
Q ss_pred CccccccchHHHHHHHHhCCCCCCCCCceEEEEEccCCChHHHHHHHHHcCcccccccc--eEEEEEeCCCCCHHHHHHH
Q 047321 104 GGVCGRVDEKNELLSKLLCGSSEQQKGLDVISLVGLGGIGKTTLAQLAYNNDEVKRNFE--KVIWVCVSNTFEEISVAKA 181 (807)
Q Consensus 104 ~~~vGR~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~--~~~wv~~~~~~~~~~~~~~ 181 (807)
.++||.+..++.|...+..+. -...+.++|+.|+||||+|+.+++......... ...+ .....-...+.
T Consensus 24 ~dliGq~~~v~~L~~~~~~gr-----i~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~~~~~~~~~~~----~~cg~c~~C~~ 94 (598)
T PRK09111 24 DDLIGQEAMVRTLTNAFETGR-----IAQAFMLTGVRGVGKTTTARILARALNYEGPDGDGGPTI----DLCGVGEHCQA 94 (598)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-----CCceEEEECCCCCCHHHHHHHHHHhhCcCCccccCCCcc----ccCcccHHHHH
Confidence 469999999999999987432 345788999999999999999976321111000 0000 00011111222
Q ss_pred HHHHcCCC-----CCCCccHHH---HHHHHHHH-HhCCceEEEEeCCCCCCccChHHHHHhhcCCCCCcEEEEEc-CCHH
Q 047321 182 IIEGLGVS-----AFGLSEFES---LMKQIQEY-ITGKKIFLVLDDVWDGDYKKWDPFFSCLKNGHHESKILITT-HDRS 251 (807)
Q Consensus 182 i~~~l~~~-----~~~~~~~~~---~~~~l~~~-l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~IliTT-R~~~ 251 (807)
|...-... .......++ +...++.. ..+++-++|+|++..-.......+...+..-...+.+|++| ....
T Consensus 95 i~~g~h~Dv~e~~a~s~~gvd~IReIie~~~~~P~~a~~KVvIIDEad~Ls~~a~naLLKtLEePp~~~~fIl~tte~~k 174 (598)
T PRK09111 95 IMEGRHVDVLEMDAASHTGVDDIREIIESVRYRPVSARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHVKFIFATTEIRK 174 (598)
T ss_pred HhcCCCCceEEecccccCCHHHHHHHHHHHHhchhcCCcEEEEEEChHhCCHHHHHHHHHHHHhCCCCeEEEEEeCChhh
Confidence 22211110 001122233 22222111 23556689999996666566777888887766667666555 3334
Q ss_pred HHHHh-CCCceEeCCCCChhhHHHHHHHHHhccCCccCccchHHHHHHHHHHcCCCHHHHHHH
Q 047321 252 VALQL-GSIDIIPVKELGEGECWLLFKQIAFLRRSFEDCEKLEPIGRKIASKCKGLPLAAKVI 313 (807)
Q Consensus 252 v~~~~-~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~~~~I~~~c~glPLai~~~ 313 (807)
+...+ .....+++..++.++....+.+.+-..+.. --.+....|++.++|.+.-+...
T Consensus 175 ll~tI~SRcq~~~f~~l~~~el~~~L~~i~~kegi~----i~~eAl~lIa~~a~Gdlr~al~~ 233 (598)
T PRK09111 175 VPVTVLSRCQRFDLRRIEADVLAAHLSRIAAKEGVE----VEDEALALIARAAEGSVRDGLSL 233 (598)
T ss_pred hhHHHHhheeEEEecCCCHHHHHHHHHHHHHHcCCC----CCHHHHHHHHHHcCCCHHHHHHH
Confidence 33222 234689999999999999998877443321 12356788999999998665443
No 92
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=98.16 E-value=7.1e-05 Score=83.10 Aligned_cols=168 Identities=19% Similarity=0.202 Sum_probs=102.9
Q ss_pred CceEEEEEccCCChHHHHHHHHHcCccccccc--ceEEEEEeCCCCCHHHHHHHHHHHcCCCCCCCccHHHHHHHHHHHH
Q 047321 130 GLDVISLVGLGGIGKTTLAQLAYNNDEVKRNF--EKVIWVCVSNTFEEISVAKAIIEGLGVSAFGLSEFESLMKQIQEYI 207 (807)
Q Consensus 130 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f--~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l 207 (807)
....+.|+|..|+|||+|++.+.+. +.... ..+++++ ...+...+...+.... .....+.+.+
T Consensus 140 ~~npl~i~G~~G~GKTHLl~Ai~~~--l~~~~~~~~v~yv~------~~~f~~~~~~~l~~~~-------~~~~~~~~~~ 204 (450)
T PRK14087 140 SYNPLFIYGESGMGKTHLLKAAKNY--IESNFSDLKVSYMS------GDEFARKAVDILQKTH-------KEIEQFKNEI 204 (450)
T ss_pred ccCceEEECCCCCcHHHHHHHHHHH--HHHhCCCCeEEEEE------HHHHHHHHHHHHHHhh-------hHHHHHHHHh
Confidence 3456899999999999999999873 22211 2334443 3455566655553210 1122333333
Q ss_pred hCCceEEEEeCCCCCCc-cCh-HHHHHhhcCC-CCCcEEEEEcCCH---------HHHHHhCCCceEeCCCCChhhHHHH
Q 047321 208 TGKKIFLVLDDVWDGDY-KKW-DPFFSCLKNG-HHESKILITTHDR---------SVALQLGSIDIIPVKELGEGECWLL 275 (807)
Q Consensus 208 ~~k~~LlVlDdv~~~~~-~~~-~~l~~~l~~~-~~gs~IliTTR~~---------~v~~~~~~~~~~~l~~L~~~~~~~L 275 (807)
+ +.-+||+||+..... ..+ +.+...+... ..|..||+|+... ++...+...-.+.+++++.++-.++
T Consensus 205 ~-~~dvLiIDDiq~l~~k~~~~e~lf~l~N~~~~~~k~iIltsd~~P~~l~~l~~rL~SR~~~Gl~~~L~~pd~e~r~~i 283 (450)
T PRK14087 205 C-QNDVLIIDDVQFLSYKEKTNEIFFTIFNNFIENDKQLFFSSDKSPELLNGFDNRLITRFNMGLSIAIQKLDNKTATAI 283 (450)
T ss_pred c-cCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCcEEEECCCCHHHHhhccHHHHHHHhCCceeccCCcCHHHHHHH
Confidence 3 455889999965321 223 3354444432 3455688886642 2223334445788999999999999
Q ss_pred HHHHHhccCCccCccchHHHHHHHHHHcCCCHHHHHHHHH
Q 047321 276 FKQIAFLRRSFEDCEKLEPIGRKIASKCKGLPLAAKVIGN 315 (807)
Q Consensus 276 f~~~a~~~~~~~~~~~~~~~~~~I~~~c~glPLai~~~~~ 315 (807)
+.+++-..+. ...--.++...|++.++|.|-.+..+..
T Consensus 284 L~~~~~~~gl--~~~l~~evl~~Ia~~~~gd~R~L~gaL~ 321 (450)
T PRK14087 284 IKKEIKNQNI--KQEVTEEAINFISNYYSDDVRKIKGSVS 321 (450)
T ss_pred HHHHHHhcCC--CCCCCHHHHHHHHHccCCCHHHHHHHHH
Confidence 9998854321 0123367889999999999987765543
No 93
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.14 E-value=7.6e-05 Score=84.40 Aligned_cols=199 Identities=14% Similarity=0.172 Sum_probs=116.1
Q ss_pred CccccccchHHHHHHHHhCCCCCCCCCceEEEEEccCCChHHHHHHHHHcCcccccccceEEEEEeCCCCCHHHHHHHHH
Q 047321 104 GGVCGRVDEKNELLSKLLCGSSEQQKGLDVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSNTFEEISVAKAII 183 (807)
Q Consensus 104 ~~~vGR~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 183 (807)
.+++|.+..++.|...+.... -...+.++|+.|+||||+|+.+++......... ...+..-...+.|.
T Consensus 16 ~dIiGQe~v~~~L~~ai~~~r-----i~ha~Lf~GPpG~GKTtiArilAk~L~C~~~~~-------~~pCg~C~sC~~i~ 83 (624)
T PRK14959 16 AEVAGQETVKAILSRAAQENR-----VAPAYLFSGTRGVGKTTIARIFAKALNCETAPT-------GEPCNTCEQCRKVT 83 (624)
T ss_pred HHhcCCHHHHHHHHHHHHcCC-----CCceEEEECCCCCCHHHHHHHHHHhccccCCCC-------CCCCcccHHHHHHh
Confidence 468998888888888886422 356788999999999999999876321110000 00111111112221
Q ss_pred HHcCCC--------CCCCccHHHHHHHHHH-HHhCCceEEEEeCCCCCCccChHHHHHhhcCCCCCcEEEEEcCC-HHHH
Q 047321 184 EGLGVS--------AFGLSEFESLMKQIQE-YITGKKIFLVLDDVWDGDYKKWDPFFSCLKNGHHESKILITTHD-RSVA 253 (807)
Q Consensus 184 ~~l~~~--------~~~~~~~~~~~~~l~~-~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~IliTTR~-~~v~ 253 (807)
...... ....++...+...+.. -..+++-++|+|++..-....+..+...+........+|++|.+ ..+.
T Consensus 84 ~g~hpDv~eId~a~~~~Id~iR~L~~~~~~~p~~g~~kVIIIDEad~Lt~~a~naLLk~LEEP~~~~ifILaTt~~~kll 163 (624)
T PRK14959 84 QGMHVDVVEIDGASNRGIDDAKRLKEAIGYAPMEGRYKVFIIDEAHMLTREAFNALLKTLEEPPARVTFVLATTEPHKFP 163 (624)
T ss_pred cCCCCceEEEecccccCHHHHHHHHHHHHhhhhcCCceEEEEEChHhCCHHHHHHHHHHhhccCCCEEEEEecCChhhhh
Confidence 111000 0011111222222211 12456779999999766656667787777654445556665554 3443
Q ss_pred HHh-CCCceEeCCCCChhhHHHHHHHHHhccCCccCccchHHHHHHHHHHcCCCH-HHHHHHHHHhh
Q 047321 254 LQL-GSIDIIPVKELGEGECWLLFKQIAFLRRSFEDCEKLEPIGRKIASKCKGLP-LAAKVIGNLLR 318 (807)
Q Consensus 254 ~~~-~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~~~~I~~~c~glP-Lai~~~~~~l~ 318 (807)
..+ .-...+++++++.++....+...+...+.. -..+.+..|++.++|.+ .|+..+..++.
T Consensus 164 ~TI~SRcq~i~F~pLs~~eL~~~L~~il~~egi~----id~eal~lIA~~s~GdlR~Al~lLeqll~ 226 (624)
T PRK14959 164 VTIVSRCQHFTFTRLSEAGLEAHLTKVLGREGVD----YDPAAVRLIARRAAGSVRDSMSLLGQVLA 226 (624)
T ss_pred HHHHhhhhccccCCCCHHHHHHHHHHHHHHcCCC----CCHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 222 224578999999999999998876543321 12456788999999965 67777765553
No 94
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=98.14 E-value=2.1e-05 Score=85.57 Aligned_cols=178 Identities=17% Similarity=0.132 Sum_probs=99.4
Q ss_pred CccccccchHHHHHHHHhCCCCC-------CCCCceEEEEEccCCChHHHHHHHHHcCcccccccceEEEEEeCCCCCHH
Q 047321 104 GGVCGRVDEKNELLSKLLCGSSE-------QQKGLDVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSNTFEEI 176 (807)
Q Consensus 104 ~~~vGR~~~~~~l~~~L~~~~~~-------~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~ 176 (807)
.++.|+++.++++.+.+..+-.. +-...+-+.|+|++|+|||++|+.+++. ....| +.+.. .
T Consensus 122 ~di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lakaia~~--l~~~~-----~~v~~----~ 190 (364)
T TIGR01242 122 EDIGGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHE--TNATF-----IRVVG----S 190 (364)
T ss_pred HHhCChHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHh--CCCCE-----Eecch----H
Confidence 46899999999998887432110 0123456899999999999999999983 33333 22211 1
Q ss_pred HHHHHHHHHcCCCCCCCccHHHHHHHHHHH-HhCCceEEEEeCCCCC-----------CccChHHHHHhh---cC--CCC
Q 047321 177 SVAKAIIEGLGVSAFGLSEFESLMKQIQEY-ITGKKIFLVLDDVWDG-----------DYKKWDPFFSCL---KN--GHH 239 (807)
Q Consensus 177 ~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~-l~~k~~LlVlDdv~~~-----------~~~~~~~l~~~l---~~--~~~ 239 (807)
.+.... ++ ........+.+. -...+.+|++||++.- +......+...+ .. ...
T Consensus 191 ~l~~~~---~g-------~~~~~i~~~f~~a~~~~p~il~iDEiD~l~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~~~~ 260 (364)
T TIGR01242 191 ELVRKY---IG-------EGARLVREIFELAKEKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAELDGFDPRG 260 (364)
T ss_pred HHHHHh---hh-------HHHHHHHHHHHHHHhcCCcEEEhhhhhhhccccccCCCCccHHHHHHHHHHHHHhhCCCCCC
Confidence 111110 00 111122222222 2346789999998542 111122233333 11 124
Q ss_pred CcEEEEEcCCHHHH-HHh----CCCceEeCCCCChhhHHHHHHHHHhccCCccCccchHHHHHHHHHHcCCCH
Q 047321 240 ESKILITTHDRSVA-LQL----GSIDIIPVKELGEGECWLLFKQIAFLRRSFEDCEKLEPIGRKIASKCKGLP 307 (807)
Q Consensus 240 gs~IliTTR~~~v~-~~~----~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~~~~I~~~c~glP 307 (807)
+.+||.||...+.. ..+ .-...+.++..+.++..++|..++...... .... ...+++.+.|..
T Consensus 261 ~v~vI~ttn~~~~ld~al~r~grfd~~i~v~~P~~~~r~~Il~~~~~~~~l~-~~~~----~~~la~~t~g~s 328 (364)
T TIGR01242 261 NVKVIAATNRPDILDPALLRPGRFDRIIEVPLPDFEGRLEILKIHTRKMKLA-EDVD----LEAIAKMTEGAS 328 (364)
T ss_pred CEEEEEecCChhhCChhhcCcccCceEEEeCCcCHHHHHHHHHHHHhcCCCC-ccCC----HHHHHHHcCCCC
Confidence 56788888754321 111 113578999999999999999877543321 1112 366777777653
No 95
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.13 E-value=9.6e-05 Score=84.50 Aligned_cols=202 Identities=14% Similarity=0.147 Sum_probs=113.7
Q ss_pred CccccccchHHHHHHHHhCCCCCCCCCceEEEEEccCCChHHHHHHHHHcCcccccccceEEEEE-eCCCCCHHHHHHHH
Q 047321 104 GGVCGRVDEKNELLSKLLCGSSEQQKGLDVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVC-VSNTFEEISVAKAI 182 (807)
Q Consensus 104 ~~~vGR~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~-~~~~~~~~~~~~~i 182 (807)
.++||.+..++.|...+..+. -...+.++|+.|+||||+|+.+++........+...|.. +......-...+.+
T Consensus 16 ~eivGQe~i~~~L~~~i~~~r-----i~ha~Lf~Gp~GvGKttlA~~lAk~L~c~~~~~~~~~~~~~~~~Cg~C~sC~~~ 90 (620)
T PRK14954 16 ADITAQEHITHTIQNSLRMDR-----VGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDPVYLQEVTEPCGECESCRDF 90 (620)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-----CCeeEEEECCCCCCHHHHHHHHHHHhCCCCcCCccccccccCCCCccCHHHHHH
Confidence 468999999999988886422 345588999999999999988875321111110000110 00111111111222
Q ss_pred HHHcCCC-----CCCCccHHHHHHHHHHH----HhCCceEEEEeCCCCCCccChHHHHHhhcCCCCCcEEEEEc-CCHHH
Q 047321 183 IEGLGVS-----AFGLSEFESLMKQIQEY----ITGKKIFLVLDDVWDGDYKKWDPFFSCLKNGHHESKILITT-HDRSV 252 (807)
Q Consensus 183 ~~~l~~~-----~~~~~~~~~~~~~l~~~----l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~IliTT-R~~~v 252 (807)
...-..+ .......+++...+... ..+.+-++|+||+..-.....+.+...+..-...+.+|++| +...+
T Consensus 91 ~~g~~~n~~~~d~~s~~~vd~Ir~l~e~~~~~P~~~~~KVvIIdEad~Lt~~a~naLLK~LEePp~~tv~IL~t~~~~kL 170 (620)
T PRK14954 91 DAGTSLNISEFDAASNNSVDDIRQLRENVRYGPQKGRYRVYIIDEVHMLSTAAFNAFLKTLEEPPPHAIFIFATTELHKI 170 (620)
T ss_pred hccCCCCeEEecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEeChhhcCHHHHHHHHHHHhCCCCCeEEEEEeCChhhh
Confidence 1111100 00111233333322222 24566789999997655556777888887765556555555 43344
Q ss_pred HHH-hCCCceEeCCCCChhhHHHHHHHHHhccCCccCccchHHHHHHHHHHcCCCHH-HHHHHH
Q 047321 253 ALQ-LGSIDIIPVKELGEGECWLLFKQIAFLRRSFEDCEKLEPIGRKIASKCKGLPL-AAKVIG 314 (807)
Q Consensus 253 ~~~-~~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~~~~I~~~c~glPL-ai~~~~ 314 (807)
... ......+++.+++.++....+.+.+-..+.. --.+.+..|++.++|..- |+..+-
T Consensus 171 l~TI~SRc~~vef~~l~~~ei~~~L~~i~~~egi~----I~~eal~~La~~s~Gdlr~al~eLe 230 (620)
T PRK14954 171 PATIASRCQRFNFKRIPLDEIQSQLQMICRAEGIQ----IDADALQLIARKAQGSMRDAQSILD 230 (620)
T ss_pred hHHHHhhceEEecCCCCHHHHHHHHHHHHHHcCCC----CCHHHHHHHHHHhCCCHHHHHHHHH
Confidence 332 2335689999999999888887766433221 124567889999999654 444443
No 96
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.13 E-value=0.00012 Score=83.20 Aligned_cols=199 Identities=15% Similarity=0.123 Sum_probs=117.3
Q ss_pred CccccccchHHHHHHHHhCCCCCCCCCceEEEEEccCCChHHHHHHHHHcCcccccccceEEEEEeCCCCCHHHHHHHHH
Q 047321 104 GGVCGRVDEKNELLSKLLCGSSEQQKGLDVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSNTFEEISVAKAII 183 (807)
Q Consensus 104 ~~~vGR~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 183 (807)
.++||.+..++.|..++..+. -...+.++|+.|+||||+|+.+++...-....+ + .....-...+.|.
T Consensus 13 ~eivGq~~i~~~L~~~i~~~r-----~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~---~----~pCg~C~~C~~i~ 80 (584)
T PRK14952 13 AEVVGQEHVTEPLSSALDAGR-----INHAYLFSGPRGCGKTSSARILARSLNCAQGPT---A----TPCGVCESCVALA 80 (584)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHHhccccCCC---C----CcccccHHHHHhh
Confidence 468999999999999987422 345678999999999999999876321110000 0 0000001111111
Q ss_pred HH---------cCC-CCCCCccHHHHHHHHHHH-HhCCceEEEEeCCCCCCccChHHHHHhhcCCCCCcEEEEEc-CCHH
Q 047321 184 EG---------LGV-SAFGLSEFESLMKQIQEY-ITGKKIFLVLDDVWDGDYKKWDPFFSCLKNGHHESKILITT-HDRS 251 (807)
Q Consensus 184 ~~---------l~~-~~~~~~~~~~~~~~l~~~-l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~IliTT-R~~~ 251 (807)
.. +.. ...+.++..++.+.+... ..+++-++|+|++..-.......++..+..-...+.+|++| ....
T Consensus 81 ~~~~~~~dvieidaas~~gvd~iRel~~~~~~~P~~~~~KVvIIDEah~Lt~~A~NALLK~LEEpp~~~~fIL~tte~~k 160 (584)
T PRK14952 81 PNGPGSIDVVELDAASHGGVDDTRELRDRAFYAPAQSRYRIFIVDEAHMVTTAGFNALLKIVEEPPEHLIFIFATTEPEK 160 (584)
T ss_pred cccCCCceEEEeccccccCHHHHHHHHHHHHhhhhcCCceEEEEECCCcCCHHHHHHHHHHHhcCCCCeEEEEEeCChHh
Confidence 10 000 011122222232222211 23567799999997766677777888887766666655555 4444
Q ss_pred HHHHh-CCCceEeCCCCChhhHHHHHHHHHhccCCccCccchHHHHHHHHHHcCCCHH-HHHHHHHHhh
Q 047321 252 VALQL-GSIDIIPVKELGEGECWLLFKQIAFLRRSFEDCEKLEPIGRKIASKCKGLPL-AAKVIGNLLR 318 (807)
Q Consensus 252 v~~~~-~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~~~~I~~~c~glPL-ai~~~~~~l~ 318 (807)
+...+ .-...+++..++.++..+.+.+.+...+.. --.+.+..|++.++|.+- |+..+-.++.
T Consensus 161 ll~TI~SRc~~~~F~~l~~~~i~~~L~~i~~~egi~----i~~~al~~Ia~~s~GdlR~aln~Ldql~~ 225 (584)
T PRK14952 161 VLPTIRSRTHHYPFRLLPPRTMRALIARICEQEGVV----VDDAVYPLVIRAGGGSPRDTLSVLDQLLA 225 (584)
T ss_pred hHHHHHHhceEEEeeCCCHHHHHHHHHHHHHHcCCC----CCHHHHHHHHHHcCCCHHHHHHHHHHHHh
Confidence 43322 225689999999999998888776543321 123456888999999874 5555555443
No 97
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.13 E-value=4.9e-05 Score=87.56 Aligned_cols=195 Identities=14% Similarity=0.142 Sum_probs=113.8
Q ss_pred CccccccchHHHHHHHHhCCCCCCCCCceEEEEEccCCChHHHHHHHHHcCcccccccceEEEEEeCCCCCHHHHHHHHH
Q 047321 104 GGVCGRVDEKNELLSKLLCGSSEQQKGLDVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSNTFEEISVAKAII 183 (807)
Q Consensus 104 ~~~vGR~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 183 (807)
.++||.+..++.|..++..+. -...+.++|+.|+||||+|+.+++......... ...........+.|.
T Consensus 16 ~eiiGq~~~~~~L~~~i~~~~-----i~~a~Lf~Gp~G~GKTtlA~~lA~~l~c~~~~~------~~~~c~~c~~c~~i~ 84 (585)
T PRK14950 16 AELVGQEHVVQTLRNAIAEGR-----VAHAYLFTGPRGVGKTSTARILAKAVNCTTNDP------KGRPCGTCEMCRAIA 84 (585)
T ss_pred HHhcCCHHHHHHHHHHHHhCC-----CceEEEEECCCCCCHHHHHHHHHHHhcCCCCCC------CCCCCccCHHHHHHh
Confidence 469999999999988886422 345678999999999999999876321100000 000111112233332
Q ss_pred HHcCCC-----CCCCccHHHHH---HHHHHH-HhCCceEEEEeCCCCCCccChHHHHHhhcCCCCCcEEEEEcCC-HHHH
Q 047321 184 EGLGVS-----AFGLSEFESLM---KQIQEY-ITGKKIFLVLDDVWDGDYKKWDPFFSCLKNGHHESKILITTHD-RSVA 253 (807)
Q Consensus 184 ~~l~~~-----~~~~~~~~~~~---~~l~~~-l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~IliTTR~-~~v~ 253 (807)
...... .......+++. ..+... ..+++-++|+|++..-.....+.+...+......+.+|++|.+ ..+.
T Consensus 85 ~~~~~d~~~i~~~~~~~vd~ir~ii~~~~~~p~~~~~kVvIIDEa~~L~~~a~naLLk~LEepp~~tv~Il~t~~~~kll 164 (585)
T PRK14950 85 EGSAVDVIEMDAASHTSVDDAREIIERVQFRPALARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHAIFILATTEVHKVP 164 (585)
T ss_pred cCCCCeEEEEeccccCCHHHHHHHHHHHhhCcccCCeEEEEEeChHhCCHHHHHHHHHHHhcCCCCeEEEEEeCChhhhh
Confidence 221111 00111222222 211111 1256779999999655555667777777666566666666644 3333
Q ss_pred HHh-CCCceEeCCCCChhhHHHHHHHHHhccCCccCccchHHHHHHHHHHcCCCHHHHHHH
Q 047321 254 LQL-GSIDIIPVKELGEGECWLLFKQIAFLRRSFEDCEKLEPIGRKIASKCKGLPLAAKVI 313 (807)
Q Consensus 254 ~~~-~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~~~~I~~~c~glPLai~~~ 313 (807)
..+ .....+.+..++.++....+.+.+...+.. --.+.+..|++.++|.+..+...
T Consensus 165 ~tI~SR~~~i~f~~l~~~el~~~L~~~a~~egl~----i~~eal~~La~~s~Gdlr~al~~ 221 (585)
T PRK14950 165 ATILSRCQRFDFHRHSVADMAAHLRKIAAAEGIN----LEPGALEAIARAATGSMRDAENL 221 (585)
T ss_pred HHHHhccceeeCCCCCHHHHHHHHHHHHHHcCCC----CCHHHHHHHHHHcCCCHHHHHHH
Confidence 222 224578899999999988888776443321 12456789999999998655433
No 98
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=98.12 E-value=6.6e-05 Score=79.48 Aligned_cols=179 Identities=12% Similarity=0.084 Sum_probs=115.8
Q ss_pred ccCCccccccchHHHHHHHHhCCCCCCCCCceEEEEEccCCChHHHHHHHHHcCcccccccceEEEEEeCCCCCHHHHHH
Q 047321 101 IDEGGVCGRVDEKNELLSKLLCGSSEQQKGLDVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSNTFEEISVAK 180 (807)
Q Consensus 101 ~~~~~~vGR~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~ 180 (807)
..+..++||+.|...+.+++...-. .....-+.|.|.+|.|||.+...++.+..-...=..++++++..-.....++.
T Consensus 147 ~~p~~l~gRe~e~~~v~~F~~~hle--~~t~gSlYVsG~PGtgkt~~l~rvl~~~~~~~~~~~~v~inc~sl~~~~aiF~ 224 (529)
T KOG2227|consen 147 APPGTLKGRELEMDIVREFFSLHLE--LNTSGSLYVSGQPGTGKTALLSRVLDSLSKSSKSPVTVYINCTSLTEASAIFK 224 (529)
T ss_pred CCCCCccchHHHHHHHHHHHHhhhh--cccCcceEeeCCCCcchHHHHHHHHHhhhhhcccceeEEEeeccccchHHHHH
Confidence 3456799999999999999876544 45677899999999999999999988533222112457777776677888888
Q ss_pred HHHHHcCCCCCCCccHHHHHHHHHHHHhCC--ceEEEEeCCCCCCccChHHHHHhhcCC-CCCcEEEEEcCC--HHHHH-
Q 047321 181 AIIEGLGVSAFGLSEFESLMKQIQEYITGK--KIFLVLDDVWDGDYKKWDPFFSCLKNG-HHESKILITTHD--RSVAL- 254 (807)
Q Consensus 181 ~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k--~~LlVlDdv~~~~~~~~~~l~~~l~~~-~~gs~IliTTR~--~~v~~- 254 (807)
.|...+...........+.+..+.+...+. .+|+|+|+.+.-....-..+...|.+. -+++++|+.--- -+...
T Consensus 225 kI~~~~~q~~~s~~~~~~~~~~~~~h~~q~k~~~llVlDEmD~L~tr~~~vLy~lFewp~lp~sr~iLiGiANslDlTdR 304 (529)
T KOG2227|consen 225 KIFSSLLQDLVSPGTGMQHLEKFEKHTKQSKFMLLLVLDEMDHLITRSQTVLYTLFEWPKLPNSRIILIGIANSLDLTDR 304 (529)
T ss_pred HHHHHHHHHhcCCchhHHHHHHHHHHHhcccceEEEEechhhHHhhcccceeeeehhcccCCcceeeeeeehhhhhHHHH
Confidence 888887322222222255566666666543 689999998443222222233333322 356666554321 11111
Q ss_pred ---Hh-----CCCceEeCCCCChhhHHHHHHHHHh
Q 047321 255 ---QL-----GSIDIIPVKELGEGECWLLFKQIAF 281 (807)
Q Consensus 255 ---~~-----~~~~~~~l~~L~~~~~~~Lf~~~a~ 281 (807)
.+ .....+..++.+.++..++|..+.-
T Consensus 305 ~LprL~~~~~~~P~~l~F~PYTk~qI~~Il~~rl~ 339 (529)
T KOG2227|consen 305 FLPRLNLDLTIKPKLLVFPPYTKDQIVEILQQRLS 339 (529)
T ss_pred HhhhhhhccCCCCceeeecCCCHHHHHHHHHHHHh
Confidence 11 1245788899999999999998873
No 99
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=98.10 E-value=7.5e-05 Score=88.17 Aligned_cols=198 Identities=14% Similarity=0.116 Sum_probs=114.6
Q ss_pred CccccccchHHHHHHHHhCCCCCCCCCceEEEEEccCCChHHHHHHHHHcCcccccccceEEEEEeCCCCCHHHHHHHHH
Q 047321 104 GGVCGRVDEKNELLSKLLCGSSEQQKGLDVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSNTFEEISVAKAII 183 (807)
Q Consensus 104 ~~~vGR~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 183 (807)
.++||.+..++.|..++.... -...+.++|+.|+||||+|+.+.+...-...... .....-...+.|.
T Consensus 15 ~eiiGqe~v~~~L~~~i~~~r-----i~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~~~~~~-------~pCg~C~sC~~~~ 82 (824)
T PRK07764 15 AEVIGQEHVTEPLSTALDSGR-----INHAYLFSGPRGCGKTSSARILARSLNCVEGPTS-------TPCGECDSCVALA 82 (824)
T ss_pred HHhcCcHHHHHHHHHHHHhCC-----CCceEEEECCCCCCHHHHHHHHHHHhCcccCCCC-------CCCcccHHHHHHH
Confidence 468999999999999987432 3456889999999999999998763211110000 0000000111111
Q ss_pred HH---------cCC-CCCCCccHHHHHHHHHH-HHhCCceEEEEeCCCCCCccChHHHHHhhcCCCCCcEEEEEcCC-HH
Q 047321 184 EG---------LGV-SAFGLSEFESLMKQIQE-YITGKKIFLVLDDVWDGDYKKWDPFFSCLKNGHHESKILITTHD-RS 251 (807)
Q Consensus 184 ~~---------l~~-~~~~~~~~~~~~~~l~~-~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~IliTTR~-~~ 251 (807)
.. +.. ...+.+++.++.+.+.. -..++.-++|||++..-....+..|+..+..-...+.+|++|.+ ..
T Consensus 83 ~g~~~~~dv~eidaas~~~Vd~iR~l~~~~~~~p~~~~~KV~IIDEad~lt~~a~NaLLK~LEEpP~~~~fIl~tt~~~k 162 (824)
T PRK07764 83 PGGPGSLDVTEIDAASHGGVDDARELRERAFFAPAESRYKIFIIDEAHMVTPQGFNALLKIVEEPPEHLKFIFATTEPDK 162 (824)
T ss_pred cCCCCCCcEEEecccccCCHHHHHHHHHHHHhchhcCCceEEEEechhhcCHHHHHHHHHHHhCCCCCeEEEEEeCChhh
Confidence 11 000 00111122222221111 12456678999999777777777888888876666666655544 33
Q ss_pred HHHHhC-CCceEeCCCCChhhHHHHHHHHHhccCCccCccchHHHHHHHHHHcCCCHHHH-HHHHHHh
Q 047321 252 VALQLG-SIDIIPVKELGEGECWLLFKQIAFLRRSFEDCEKLEPIGRKIASKCKGLPLAA-KVIGNLL 317 (807)
Q Consensus 252 v~~~~~-~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~~~~I~~~c~glPLai-~~~~~~l 317 (807)
+...+. ....|++..++.++...++.+..-..+. . --.+....|++.++|.+..+ ..+-.++
T Consensus 163 Ll~TIrSRc~~v~F~~l~~~~l~~~L~~il~~EGv-~---id~eal~lLa~~sgGdlR~Al~eLEKLi 226 (824)
T PRK07764 163 VIGTIRSRTHHYPFRLVPPEVMRGYLERICAQEGV-P---VEPGVLPLVIRAGGGSVRDSLSVLDQLL 226 (824)
T ss_pred hhHHHHhheeEEEeeCCCHHHHHHHHHHHHHHcCC-C---CCHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 433332 3568999999999998888776533222 1 12345678999999988433 4443333
No 100
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=98.10 E-value=0.00015 Score=83.30 Aligned_cols=193 Identities=15% Similarity=0.165 Sum_probs=111.7
Q ss_pred CccccccchHHHHHHHHhCCCCCCCCCceEEEEEccCCChHHHHHHHHHcCcccccccceEEEEEeCCCCCHHHHHHHHH
Q 047321 104 GGVCGRVDEKNELLSKLLCGSSEQQKGLDVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSNTFEEISVAKAII 183 (807)
Q Consensus 104 ~~~vGR~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 183 (807)
.+++|.+..++.|...+..+. -...+.++|+.|+||||+|+.++...--....+ ....-.......
T Consensus 18 ~dIiGQe~~v~~L~~aI~~~r-----l~HAYLF~GP~GtGKTt~AriLAk~LnC~~~~~---------~~~pC~~C~~~~ 83 (725)
T PRK07133 18 DDIVGQDHIVQTLKNIIKSNK-----ISHAYLFSGPRGTGKTSVAKIFANALNCSHKTD---------LLEPCQECIENV 83 (725)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCcHHHHHHHHHHHhcccccCC---------CCCchhHHHHhh
Confidence 468999999999999987432 456778999999999999999875211000000 000000000000
Q ss_pred H------HcCC-CCCCCccHHHHHHHHHHH-HhCCceEEEEeCCCCCCccChHHHHHhhcCCCCCcEEEEEc-CCHHHHH
Q 047321 184 E------GLGV-SAFGLSEFESLMKQIQEY-ITGKKIFLVLDDVWDGDYKKWDPFFSCLKNGHHESKILITT-HDRSVAL 254 (807)
Q Consensus 184 ~------~l~~-~~~~~~~~~~~~~~l~~~-l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~IliTT-R~~~v~~ 254 (807)
. .+.. ...+..+..++.+.+... ..+++-++|+|++..-....+..++..+......+.+|++| +...+..
T Consensus 84 ~~~~Dvieidaasn~~vd~IReLie~~~~~P~~g~~KV~IIDEa~~LT~~A~NALLKtLEEPP~~tifILaTte~~KLl~ 163 (725)
T PRK07133 84 NNSLDIIEMDAASNNGVDEIRELIENVKNLPTQSKYKIYIIDEVHMLSKSAFNALLKTLEEPPKHVIFILATTEVHKIPL 163 (725)
T ss_pred cCCCcEEEEeccccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhCCHHHHHHHHHHhhcCCCceEEEEEcCChhhhhH
Confidence 0 0000 001111222233222221 23667799999997666667777887777655555555444 4444432
Q ss_pred H-hCCCceEeCCCCChhhHHHHHHHHHhccCCccCccchHHHHHHHHHHcCCCHH-HHHHHH
Q 047321 255 Q-LGSIDIIPVKELGEGECWLLFKQIAFLRRSFEDCEKLEPIGRKIASKCKGLPL-AAKVIG 314 (807)
Q Consensus 255 ~-~~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~~~~I~~~c~glPL-ai~~~~ 314 (807)
. ......+++.+++.++....+...+-..+.. -..+.+..|++.++|.+- |+..+-
T Consensus 164 TI~SRcq~ieF~~L~~eeI~~~L~~il~kegI~----id~eAl~~LA~lS~GslR~AlslLe 221 (725)
T PRK07133 164 TILSRVQRFNFRRISEDEIVSRLEFILEKENIS----YEKNALKLIAKLSSGSLRDALSIAE 221 (725)
T ss_pred HHHhhceeEEccCCCHHHHHHHHHHHHHHcCCC----CCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 2 2234689999999999998888766433321 123457889999999775 444433
No 101
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.09 E-value=0.00015 Score=79.21 Aligned_cols=178 Identities=19% Similarity=0.198 Sum_probs=105.7
Q ss_pred CccccccchHHHHHHHHhCCCCCCCCCceEEEEEccCCChHHHHHHHHHcCcccc------cccceEEEEEeCCCCCHHH
Q 047321 104 GGVCGRVDEKNELLSKLLCGSSEQQKGLDVISLVGLGGIGKTTLAQLAYNNDEVK------RNFEKVIWVCVSNTFEEIS 177 (807)
Q Consensus 104 ~~~vGR~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~------~~f~~~~wv~~~~~~~~~~ 177 (807)
.+++|.+..++.+...+..+. -.+.+.++|+.|+||||+|+.+.+..... ..|...+ +.....
T Consensus 17 ~~iig~~~~~~~l~~~i~~~~-----~~~~~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~~~~~~~-~~l~~~----- 85 (367)
T PRK14970 17 DDVVGQSHITNTLLNAIENNH-----LAQALLFCGPRGVGKTTCARILARKINQPGYDDPNEDFSFNI-FELDAA----- 85 (367)
T ss_pred HhcCCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCcce-EEeccc-----
Confidence 468999999999999987422 35688999999999999999987631110 1121111 011100
Q ss_pred HHHHHHHHcCCCCCCCccHHHHHHHHHHH----HhCCceEEEEeCCCCCCccChHHHHHhhcCCCCCcEEEEEcC-CHHH
Q 047321 178 VAKAIIEGLGVSAFGLSEFESLMKQIQEY----ITGKKIFLVLDDVWDGDYKKWDPFFSCLKNGHHESKILITTH-DRSV 252 (807)
Q Consensus 178 ~~~~i~~~l~~~~~~~~~~~~~~~~l~~~----l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~IliTTR-~~~v 252 (807)
.....++....+.+. ..+++-++|+||+..-....+..+...+......+.+|++|. ...+
T Consensus 86 --------------~~~~~~~i~~l~~~~~~~p~~~~~kiviIDE~~~l~~~~~~~ll~~le~~~~~~~~Il~~~~~~kl 151 (367)
T PRK14970 86 --------------SNNSVDDIRNLIDQVRIPPQTGKYKIYIIDEVHMLSSAAFNAFLKTLEEPPAHAIFILATTEKHKI 151 (367)
T ss_pred --------------cCCCHHHHHHHHHHHhhccccCCcEEEEEeChhhcCHHHHHHHHHHHhCCCCceEEEEEeCCcccC
Confidence 001111211111110 134566899999965444456667666655444555555553 3222
Q ss_pred HHH-hCCCceEeCCCCChhhHHHHHHHHHhccCCccCccchHHHHHHHHHHcCCCHHHH
Q 047321 253 ALQ-LGSIDIIPVKELGEGECWLLFKQIAFLRRSFEDCEKLEPIGRKIASKCKGLPLAA 310 (807)
Q Consensus 253 ~~~-~~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~~~~I~~~c~glPLai 310 (807)
... ......++.+++++++....+...+...+.. --.+.+..|++.++|.+-.+
T Consensus 152 ~~~l~sr~~~v~~~~~~~~~l~~~l~~~~~~~g~~----i~~~al~~l~~~~~gdlr~~ 206 (367)
T PRK14970 152 IPTILSRCQIFDFKRITIKDIKEHLAGIAVKEGIK----FEDDALHIIAQKADGALRDA 206 (367)
T ss_pred CHHHHhcceeEecCCccHHHHHHHHHHHHHHcCCC----CCHHHHHHHHHhCCCCHHHH
Confidence 222 1224578999999999999998877543321 12456788999999976533
No 102
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=98.09 E-value=4e-05 Score=75.30 Aligned_cols=128 Identities=21% Similarity=0.255 Sum_probs=79.9
Q ss_pred CceEEEEEccCCChHHHHHHHHHcCccc-------------------ccccc--eEEEEE----eCCCCC----------
Q 047321 130 GLDVISLVGLGGIGKTTLAQLAYNNDEV-------------------KRNFE--KVIWVC----VSNTFE---------- 174 (807)
Q Consensus 130 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~-------------------~~~f~--~~~wv~----~~~~~~---------- 174 (807)
.-.+|+|+|++|+|||||...+..-.+. ...|. .+-+|. .-..++
T Consensus 30 ~Ge~vaI~GpSGSGKSTLLniig~ld~pt~G~v~i~g~d~~~l~~~~~~~~R~~~iGfvFQ~~nLl~~ltv~ENv~lpl~ 109 (226)
T COG1136 30 AGEFVAIVGPSGSGKSTLLNLLGGLDKPTSGEVLINGKDLTKLSEKELAKLRRKKIGFVFQNFNLLPDLTVLENVELPLL 109 (226)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEcCcCCHHHHHHHHHHhEEEECccCCCCCCCCHHHHHHhHHH
Confidence 4569999999999999999998431110 01111 111221 111111
Q ss_pred --------HHHHHHHHHHHcCCC-------CCCCccHHHHHHHHHHHHhCCceEEEEeCCCCC-CccChHHHHHhhcCC-
Q 047321 175 --------EISVAKAIIEGLGVS-------AFGLSEFESLMKQIQEYITGKKIFLVLDDVWDG-DYKKWDPFFSCLKNG- 237 (807)
Q Consensus 175 --------~~~~~~~i~~~l~~~-------~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~-~~~~~~~l~~~l~~~- 237 (807)
..+....+++.++.. .......++..-.+.+.+..++-+|+.|+.... |.+.-+.+...+...
T Consensus 110 ~~~~~~~~~~~~~~~l~~~lgl~~~~~~~~p~eLSGGqqQRVAIARAL~~~P~iilADEPTgnLD~~t~~~V~~ll~~~~ 189 (226)
T COG1136 110 IAGKSAGRRKRAAEELLEVLGLEDRLLKKKPSELSGGQQQRVAIARALINNPKIILADEPTGNLDSKTAKEVLELLRELN 189 (226)
T ss_pred HcCCChhHHHHHHHHHHHhcCChhhhccCCchhcCHHHHHHHHHHHHHhcCCCeEEeeCccccCChHHHHHHHHHHHHHH
Confidence 122344455555543 112344566667789999999999999998654 445555566666544
Q ss_pred -CCCcEEEEEcCCHHHHHHhC
Q 047321 238 -HHESKILITTHDRSVALQLG 257 (807)
Q Consensus 238 -~~gs~IliTTR~~~v~~~~~ 257 (807)
..|..||+.|++..+|..+.
T Consensus 190 ~~~g~tii~VTHd~~lA~~~d 210 (226)
T COG1136 190 KERGKTIIMVTHDPELAKYAD 210 (226)
T ss_pred HhcCCEEEEEcCCHHHHHhCC
Confidence 45788999999999998654
No 103
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=98.08 E-value=4.6e-05 Score=71.05 Aligned_cols=125 Identities=22% Similarity=0.287 Sum_probs=79.8
Q ss_pred CceEEEEEccCCChHHHHHHHHHcCcccccccceEEEEE---------------------eCCCC---------------
Q 047321 130 GLDVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVC---------------------VSNTF--------------- 173 (807)
Q Consensus 130 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~---------------------~~~~~--------------- 173 (807)
...++.++|++|+|||||.+.+|...+.. .+.+|+. |-|++
T Consensus 27 ~Gef~fl~GpSGAGKSTllkLi~~~e~pt---~G~i~~~~~dl~~l~~~~iP~LRR~IGvVFQD~rLL~~~tvyeNVA~p 103 (223)
T COG2884 27 KGEFVFLTGPSGAGKSTLLKLIYGEERPT---RGKILVNGHDLSRLKGREIPFLRRQIGVVFQDFRLLPDRTVYENVALP 103 (223)
T ss_pred CceEEEEECCCCCCHHHHHHHHHhhhcCC---CceEEECCeecccccccccchhhheeeeEeeeccccccchHhhhhhhh
Confidence 56799999999999999999998754322 1233332 11111
Q ss_pred ------C---HHHHHHHHHHHcCCCC------CCCccHHHHHHHHHHHHhCCceEEEEeCCCCC-Cc-cChHHHHHhhc-
Q 047321 174 ------E---EISVAKAIIEGLGVSA------FGLSEFESLMKQIQEYITGKKIFLVLDDVWDG-DY-KKWDPFFSCLK- 235 (807)
Q Consensus 174 ------~---~~~~~~~i~~~l~~~~------~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~-~~-~~~~~l~~~l~- 235 (807)
. ..+-....++..+... ......++....|.+.+-+++-+|+-|+.... |+ ..|+. ...|.
T Consensus 104 L~v~G~~~~~i~~rV~~~L~~VgL~~k~~~lP~~LSGGEQQRvaIARAiV~~P~vLlADEPTGNLDp~~s~~i-m~lfee 182 (223)
T COG2884 104 LRVIGKPPREIRRRVSEVLDLVGLKHKARALPSQLSGGEQQRVAIARAIVNQPAVLLADEPTGNLDPDLSWEI-MRLFEE 182 (223)
T ss_pred hhccCCCHHHHHHHHHHHHHHhccchhhhcCccccCchHHHHHHHHHHHccCCCeEeecCCCCCCChHHHHHH-HHHHHH
Confidence 1 1122233334444321 23345666777799999999999999988553 33 34544 34443
Q ss_pred CCCCCcEEEEEcCCHHHHHHhCC
Q 047321 236 NGHHESKILITTHDRSVALQLGS 258 (807)
Q Consensus 236 ~~~~gs~IliTTR~~~v~~~~~~ 258 (807)
-...|+.||++|++.++...+..
T Consensus 183 inr~GtTVl~ATHd~~lv~~~~~ 205 (223)
T COG2884 183 INRLGTTVLMATHDLELVNRMRH 205 (223)
T ss_pred HhhcCcEEEEEeccHHHHHhccC
Confidence 34678999999999998877644
No 104
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.04 E-value=0.00023 Score=79.62 Aligned_cols=183 Identities=15% Similarity=0.151 Sum_probs=109.7
Q ss_pred CccccccchHHHHHHHHhCCCCCCCCCceEEEEEccCCChHHHHHHHHHcCccc---cc----------------ccceE
Q 047321 104 GGVCGRVDEKNELLSKLLCGSSEQQKGLDVISLVGLGGIGKTTLAQLAYNNDEV---KR----------------NFEKV 164 (807)
Q Consensus 104 ~~~vGR~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~---~~----------------~f~~~ 164 (807)
.+++|.+..++.+...+.... -...+.++|+.|+||||+|+.++....- .. .|...
T Consensus 16 ~diiGq~~i~~~L~~~i~~~~-----i~hayLf~Gp~G~GKTtlAr~lAk~L~c~~~~~~~pc~~c~nc~~i~~g~~~d~ 90 (486)
T PRK14953 16 KEVIGQEIVVRILKNAVKLQR-----VSHAYIFAGPRGTGKTTIARILAKVLNCLNPQEGEPCGKCENCVEIDKGSFPDL 90 (486)
T ss_pred HHccChHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHHhcCcCCCCCCCCCccHHHHHHhcCCCCcE
Confidence 368999999999999987432 3456788999999999999998752110 00 01111
Q ss_pred EEEEeCCCCCHHHHHHHHHHHcCCCCCCCccHHHHHHHHHHH-HhCCceEEEEeCCCCCCccChHHHHHhhcCCCCCcEE
Q 047321 165 IWVCVSNTFEEISVAKAIIEGLGVSAFGLSEFESLMKQIQEY-ITGKKIFLVLDDVWDGDYKKWDPFFSCLKNGHHESKI 243 (807)
Q Consensus 165 ~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~-l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~I 243 (807)
+++..... .+..+...+...+... ..+++-++|+|++..-.....+.+...+....+...+
T Consensus 91 ~eidaas~------------------~gvd~ir~I~~~~~~~P~~~~~KVvIIDEad~Lt~~a~naLLk~LEepp~~~v~ 152 (486)
T PRK14953 91 IEIDAASN------------------RGIDDIRALRDAVSYTPIKGKYKVYIIDEAHMLTKEAFNALLKTLEEPPPRTIF 152 (486)
T ss_pred EEEeCccC------------------CCHHHHHHHHHHHHhCcccCCeeEEEEEChhhcCHHHHHHHHHHHhcCCCCeEE
Confidence 11111111 1111122222222111 2356779999999665555566777777665555555
Q ss_pred EEEcCC-HHHHHH-hCCCceEeCCCCChhhHHHHHHHHHhccCCccCccchHHHHHHHHHHcCCCHHHHHHH
Q 047321 244 LITTHD-RSVALQ-LGSIDIIPVKELGEGECWLLFKQIAFLRRSFEDCEKLEPIGRKIASKCKGLPLAAKVI 313 (807)
Q Consensus 244 liTTR~-~~v~~~-~~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~~~~I~~~c~glPLai~~~ 313 (807)
|++|.+ ..+... ......+++.+++.++....+.+.+-..+- .--.+.+..|++.++|.+..+...
T Consensus 153 Il~tt~~~kl~~tI~SRc~~i~f~~ls~~el~~~L~~i~k~egi----~id~~al~~La~~s~G~lr~al~~ 220 (486)
T PRK14953 153 ILCTTEYDKIPPTILSRCQRFIFSKPTKEQIKEYLKRICNEEKI----EYEEKALDLLAQASEGGMRDAASL 220 (486)
T ss_pred EEEECCHHHHHHHHHHhceEEEcCCCCHHHHHHHHHHHHHHcCC----CCCHHHHHHHHHHcCCCHHHHHHH
Confidence 555543 333322 222457899999999999888887644332 112356788899999977655443
No 105
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.04 E-value=3.7e-06 Score=89.58 Aligned_cols=12 Identities=8% Similarity=-0.092 Sum_probs=7.3
Q ss_pred cccccccccchh
Q 047321 784 TLQAGEQDYENE 795 (807)
Q Consensus 784 ~L~~L~l~~~~~ 795 (807)
+|+.|++++|..
T Consensus 157 SLk~L~Is~c~~ 168 (426)
T PRK15386 157 SLKTLSLTGCSN 168 (426)
T ss_pred cccEEEecCCCc
Confidence 566666666653
No 106
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=98.02 E-value=2.3e-05 Score=83.19 Aligned_cols=91 Identities=15% Similarity=0.098 Sum_probs=63.9
Q ss_pred CceEEEEEccCCChHHHHHHHHHcCcccccccceEEEEEeCCC--CCHHHHHHHHHHHcCCCCCCCccHH------HHHH
Q 047321 130 GLDVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSNT--FEEISVAKAIIEGLGVSAFGLSEFE------SLMK 201 (807)
Q Consensus 130 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~--~~~~~~~~~i~~~l~~~~~~~~~~~------~~~~ 201 (807)
.-..++|+|++|+|||||++.+++.... ++|+..+||.+.+. .++.++++.++..+-....+..... ...+
T Consensus 167 ~Gq~~~IvG~~g~GKTtL~~~i~~~I~~-nhfdv~v~VlLIgER~~EVtDLqrsIlg~Vvast~d~p~~~~~~va~~v~e 245 (415)
T TIGR00767 167 KGQRGLIVAPPKAGKTVLLQKIAQAITR-NHPEVELIVLLIDERPEEVTDMQRSVKGEVVASTFDEPASRHVQVAEMVIE 245 (415)
T ss_pred CCCEEEEECCCCCChhHHHHHHHHhhcc-cCCceEEEEEEcCCCCccHHHHHHHhhceEEEecCCCChHHHHHHHHHHHH
Confidence 5568999999999999999999985433 37999999999866 7899999998655444333322111 1111
Q ss_pred HHHHH-HhCCceEEEEeCCCC
Q 047321 202 QIQEY-ITGKKIFLVLDDVWD 221 (807)
Q Consensus 202 ~l~~~-l~~k~~LlVlDdv~~ 221 (807)
..... -.|++.+|++|++..
T Consensus 246 ~Ae~~~~~GkdVVLlIDEitR 266 (415)
T TIGR00767 246 KAKRLVEHKKDVVILLDSITR 266 (415)
T ss_pred HHHHHHHcCCCeEEEEEChhH
Confidence 12222 258999999999943
No 107
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.01 E-value=2e-06 Score=81.73 Aligned_cols=60 Identities=23% Similarity=0.381 Sum_probs=19.7
Q ss_pred cCcccccccccCCCccccchhhhccccCC-CCCCcccEEEEccCCCCCCCcc--cccCCCCccEEeeccCc
Q 047321 675 AFPKLKSLEIDGMKELEEWNYRITRKENI-SIMPRLSSLQIMNCRKLKALPD--YLLQTIALQKLSIYSCD 742 (807)
Q Consensus 675 ~l~~L~~L~l~~~~~l~~~~~~~~~~~~~-~~l~~L~~L~l~~c~~L~~lp~--~l~~l~~L~~L~l~~c~ 742 (807)
.+++|+.|.+++ +.++.+.. .+ ..+|+|+.|+++++ ++..+-. .+..+++|+.|++.++|
T Consensus 62 ~L~~L~~L~L~~-N~I~~i~~------~l~~~lp~L~~L~L~~N-~I~~l~~l~~L~~l~~L~~L~L~~NP 124 (175)
T PF14580_consen 62 GLPRLKTLDLSN-NRISSISE------GLDKNLPNLQELYLSNN-KISDLNELEPLSSLPKLRVLSLEGNP 124 (175)
T ss_dssp --TT--EEE--S-S---S-CH------HHHHH-TT--EEE-TTS----SCCCCGGGGG-TT--EEE-TT-G
T ss_pred ChhhhhhcccCC-CCCCcccc------chHHhCCcCCEEECcCC-cCCChHHhHHHHcCCCcceeeccCCc
Confidence 566677776666 34544421 11 13666777777665 4443321 34456666666666654
No 108
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=98.00 E-value=2.9e-05 Score=83.80 Aligned_cols=120 Identities=15% Similarity=0.167 Sum_probs=77.1
Q ss_pred CccccccchHHHHHHHHhCCCCCCCCCceEEEEEccCCChHHHHHHHHHcCcccccccceEEEEEeCCCCCHHHHHHHHH
Q 047321 104 GGVCGRVDEKNELLSKLLCGSSEQQKGLDVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSNTFEEISVAKAII 183 (807)
Q Consensus 104 ~~~vGR~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 183 (807)
.++++.++.++.+...|.. .+.+.++|++|+|||++|+.+++.......|+.+.||.+.+.++...+...+
T Consensus 175 ~d~~i~e~~le~l~~~L~~--------~~~iil~GppGtGKT~lA~~la~~l~~~~~~~~v~~VtFHpsySYeDFI~G~- 245 (459)
T PRK11331 175 NDLFIPETTIETILKRLTI--------KKNIILQGPPGVGKTFVARRLAYLLTGEKAPQRVNMVQFHQSYSYEDFIQGY- 245 (459)
T ss_pred hcccCCHHHHHHHHHHHhc--------CCCEEEECCCCCCHHHHHHHHHHHhcCCcccceeeEEeecccccHHHHhccc-
Confidence 4578889999999999873 3468889999999999999998754444567788899999888766654322
Q ss_pred HHcCCCCCCCccHH-HHHHHHHHHH--hCCceEEEEeCCCCCCccC-hHHHHHhhc
Q 047321 184 EGLGVSAFGLSEFE-SLMKQIQEYI--TGKKIFLVLDDVWDGDYKK-WDPFFSCLK 235 (807)
Q Consensus 184 ~~l~~~~~~~~~~~-~~~~~l~~~l--~~k~~LlVlDdv~~~~~~~-~~~l~~~l~ 235 (807)
.....+..-.. -..+.+.+.. .+++++||+|++...+... +..+...+.
T Consensus 246 ---rP~~vgy~~~~G~f~~~~~~A~~~p~~~~vliIDEINRani~kiFGel~~lLE 298 (459)
T PRK11331 246 ---RPNGVGFRRKDGIFYNFCQQAKEQPEKKYVFIIDEINRANLSKVFGEVMMLME 298 (459)
T ss_pred ---CCCCCCeEecCchHHHHHHHHHhcccCCcEEEEehhhccCHHHhhhhhhhhcc
Confidence 11111111001 1122222222 2478999999996655333 445555444
No 109
>PF14516 AAA_35: AAA-like domain
Probab=98.00 E-value=0.00064 Score=72.69 Aligned_cols=202 Identities=15% Similarity=0.129 Sum_probs=120.1
Q ss_pred cCCccccccchHHHHHHHHhCCCCCCCCCceEEEEEccCCChHHHHHHHHHcCcccccccceEEEEEeCCC-----CCHH
Q 047321 102 DEGGVCGRVDEKNELLSKLLCGSSEQQKGLDVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSNT-----FEEI 176 (807)
Q Consensus 102 ~~~~~vGR~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~-----~~~~ 176 (807)
+.+-+|.|...-+++.+.+.. ....+.|.|+-.+|||+|...+.+..+- ..+ ..+++++... .+..
T Consensus 9 ~~~~Yi~R~~~e~~~~~~i~~-------~G~~~~I~apRq~GKTSll~~l~~~l~~-~~~-~~v~id~~~~~~~~~~~~~ 79 (331)
T PF14516_consen 9 DSPFYIERPPAEQECYQEIVQ-------PGSYIRIKAPRQMGKTSLLLRLLERLQQ-QGY-RCVYIDLQQLGSAIFSDLE 79 (331)
T ss_pred CCCcccCchHHHHHHHHHHhc-------CCCEEEEECcccCCHHHHHHHHHHHHHH-CCC-EEEEEEeecCCCcccCCHH
Confidence 445678998777777777753 3468999999999999999998774322 233 3456766542 2455
Q ss_pred HHHHHHHH----HcCCCCC-------CCccHHHHHHHHHHHH---hCCceEEEEeCCCCC-C-ccChHHHHHhhcC----
Q 047321 177 SVAKAIIE----GLGVSAF-------GLSEFESLMKQIQEYI---TGKKIFLVLDDVWDG-D-YKKWDPFFSCLKN---- 236 (807)
Q Consensus 177 ~~~~~i~~----~l~~~~~-------~~~~~~~~~~~l~~~l---~~k~~LlVlDdv~~~-~-~~~~~~l~~~l~~---- 236 (807)
..++.+.. +++.... ...........+.+++ .+++.+|++|++..- + ....+.+...+..
T Consensus 80 ~f~~~~~~~i~~~L~l~~~l~~~w~~~~~~~~~~~~~~~~~ll~~~~~~lVL~iDEiD~l~~~~~~~~dF~~~LR~~~~~ 159 (331)
T PF14516_consen 80 QFLRWFCEEISRQLKLDEKLDEYWDEEIGSKISCTEYFEEYLLKQIDKPLVLFIDEIDRLFEYPQIADDFFGLLRSWYEQ 159 (331)
T ss_pred HHHHHHHHHHHHHcCCChhHHHHHHHhcCChhhHHHHHHHHHHhcCCCCEEEEEechhhhccCcchHHHHHHHHHHHHHh
Confidence 55555544 4443310 0111122233344433 268999999999542 1 1222334443332
Q ss_pred CC----CCcEEEEEcCCHHHHHHh-------CCCceEeCCCCChhhHHHHHHHHHhccCCccCccchHHHHHHHHHHcCC
Q 047321 237 GH----HESKILITTHDRSVALQL-------GSIDIIPVKELGEGECWLLFKQIAFLRRSFEDCEKLEPIGRKIASKCKG 305 (807)
Q Consensus 237 ~~----~gs~IliTTR~~~v~~~~-------~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~~~~I~~~c~g 305 (807)
.. ...-.+|..+........ .....+.|++++.+|...|..++-.. . -....++|...+||
T Consensus 160 ~~~~~~~~~L~li~~~~t~~~~~~~~~~SPFNIg~~i~L~~Ft~~ev~~L~~~~~~~-----~---~~~~~~~l~~~tgG 231 (331)
T PF14516_consen 160 RKNNPIWQKLRLILAGSTEDYIILDINQSPFNIGQPIELPDFTPEEVQELAQRYGLE-----F---SQEQLEQLMDWTGG 231 (331)
T ss_pred cccCcccceEEEEEecCcccccccCCCCCCcccccceeCCCCCHHHHHHHHHhhhcc-----C---CHHHHHHHHHHHCC
Confidence 11 112223333322211111 11347889999999999998876321 1 12237999999999
Q ss_pred CHHHHHHHHHHhhcC
Q 047321 306 LPLAAKVIGNLLRSK 320 (807)
Q Consensus 306 lPLai~~~~~~l~~~ 320 (807)
+|..+..++..+...
T Consensus 232 hP~Lv~~~~~~l~~~ 246 (331)
T PF14516_consen 232 HPYLVQKACYLLVEE 246 (331)
T ss_pred CHHHHHHHHHHHHHc
Confidence 999999999999764
No 110
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=97.99 E-value=0.0003 Score=78.66 Aligned_cols=194 Identities=12% Similarity=0.105 Sum_probs=112.9
Q ss_pred CccccccchHHHHHHHHhCCCCCCCCCceEEEEEccCCChHHHHHHHHHcCcccccccceEEEEEeCCCCCHHHHHHHHH
Q 047321 104 GGVCGRVDEKNELLSKLLCGSSEQQKGLDVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSNTFEEISVAKAII 183 (807)
Q Consensus 104 ~~~vGR~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 183 (807)
.++||-+..++.+...+..+ .-...+.++|+.|+||||+|+.+++..--...-+. .....-...+.+.
T Consensus 14 deiiGqe~v~~~L~~~I~~g-----rl~hayLf~Gp~G~GKTt~Ar~LAk~L~c~~~~~~-------~pC~~C~~C~~~~ 81 (535)
T PRK08451 14 DELIGQESVSKTLSLALDNN-----RLAHAYLFSGLRGSGKTSSARIFARALVCEQGPSS-------TPCDTCIQCQSAL 81 (535)
T ss_pred HHccCcHHHHHHHHHHHHcC-----CCCeeEEEECCCCCcHHHHHHHHHHHhcCCCCCCC-------CCCcccHHHHHHh
Confidence 46899998899999888642 23457789999999999999987652110000000 0000000000000
Q ss_pred HHcCC-----CCCCCccHHHHHHHHHHH----HhCCceEEEEeCCCCCCccChHHHHHhhcCCCCCcEEEEEcCCH-HHH
Q 047321 184 EGLGV-----SAFGLSEFESLMKQIQEY----ITGKKIFLVLDDVWDGDYKKWDPFFSCLKNGHHESKILITTHDR-SVA 253 (807)
Q Consensus 184 ~~l~~-----~~~~~~~~~~~~~~l~~~----l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~IliTTR~~-~v~ 253 (807)
..... ........+++...+... ..+++-++|+|++..-.......++..+......+++|++|.+. .+.
T Consensus 82 ~~~h~dv~eldaas~~gId~IRelie~~~~~P~~~~~KVvIIDEad~Lt~~A~NALLK~LEEpp~~t~FIL~ttd~~kL~ 161 (535)
T PRK08451 82 ENRHIDIIEMDAASNRGIDDIRELIEQTKYKPSMARFKIFIIDEVHMLTKEAFNALLKTLEEPPSYVKFILATTDPLKLP 161 (535)
T ss_pred hcCCCeEEEeccccccCHHHHHHHHHHHhhCcccCCeEEEEEECcccCCHHHHHHHHHHHhhcCCceEEEEEECChhhCc
Confidence 00000 000001122222222211 12556799999997766667777888887766667777777653 221
Q ss_pred HHh-CCCceEeCCCCChhhHHHHHHHHHhccCCccCccchHHHHHHHHHHcCCCHHHHHHH
Q 047321 254 LQL-GSIDIIPVKELGEGECWLLFKQIAFLRRSFEDCEKLEPIGRKIASKCKGLPLAAKVI 313 (807)
Q Consensus 254 ~~~-~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~~~~I~~~c~glPLai~~~ 313 (807)
..+ .-...+++.+++.++....+.+.+-..+.. --.+.+..|++.++|.+.-+..+
T Consensus 162 ~tI~SRc~~~~F~~Ls~~ei~~~L~~Il~~EGi~----i~~~Al~~Ia~~s~GdlR~alnl 218 (535)
T PRK08451 162 ATILSRTQHFRFKQIPQNSIISHLKTILEKEGVS----YEPEALEILARSGNGSLRDTLTL 218 (535)
T ss_pred hHHHhhceeEEcCCCCHHHHHHHHHHHHHHcCCC----CCHHHHHHHHHHcCCcHHHHHHH
Confidence 111 224689999999999999888776443321 12456789999999998655443
No 111
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.99 E-value=0.00035 Score=80.44 Aligned_cols=196 Identities=14% Similarity=0.129 Sum_probs=113.5
Q ss_pred CccccccchHHHHHHHHhCCCCCCCCCceEEEEEccCCChHHHHHHHHHcCcccccccceEEEEEeCCCCCHHHHHHHHH
Q 047321 104 GGVCGRVDEKNELLSKLLCGSSEQQKGLDVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSNTFEEISVAKAII 183 (807)
Q Consensus 104 ~~~vGR~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 183 (807)
.+++|.+..++.|..++.... -...+.++|+.|+||||+|+.++...... ..+.. .......-...+.+.
T Consensus 16 ~~liGq~~i~~~L~~~l~~~r-----l~~a~Lf~Gp~G~GKttlA~~lAk~L~c~-~~~~~----~~~~Cg~C~~C~~i~ 85 (620)
T PRK14948 16 DELVGQEAIATTLKNALISNR-----IAPAYLFTGPRGTGKTSSARILAKSLNCL-NSDKP----TPEPCGKCELCRAIA 85 (620)
T ss_pred hhccChHHHHHHHHHHHHcCC-----CCceEEEECCCCCChHHHHHHHHHHhcCC-CcCCC----CCCCCcccHHHHHHh
Confidence 468999999999999887532 34578899999999999999997632111 00000 001111122223332
Q ss_pred HHcCCC-----CCCCccHHHHHHHHHHH----HhCCceEEEEeCCCCCCccChHHHHHhhcCCCCCcEEEEEcCCH-HHH
Q 047321 184 EGLGVS-----AFGLSEFESLMKQIQEY----ITGKKIFLVLDDVWDGDYKKWDPFFSCLKNGHHESKILITTHDR-SVA 253 (807)
Q Consensus 184 ~~l~~~-----~~~~~~~~~~~~~l~~~----l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~IliTTR~~-~v~ 253 (807)
...... .......+.+.+.+... ..+++-++|+|++..-....+..++..+..-...+.+|++|.+. .+.
T Consensus 86 ~g~h~D~~ei~~~~~~~vd~IReii~~a~~~p~~~~~KViIIDEad~Lt~~a~naLLK~LEePp~~tvfIL~t~~~~~ll 165 (620)
T PRK14948 86 AGNALDVIEIDAASNTGVDNIRELIERAQFAPVQARWKVYVIDECHMLSTAAFNALLKTLEEPPPRVVFVLATTDPQRVL 165 (620)
T ss_pred cCCCccEEEEeccccCCHHHHHHHHHHHhhChhcCCceEEEEECccccCHHHHHHHHHHHhcCCcCeEEEEEeCChhhhh
Confidence 221110 00112222222222111 13566789999997666666777888887655555555555443 333
Q ss_pred HHh-CCCceEeCCCCChhhHHHHHHHHHhccCCccCccchHHHHHHHHHHcCCCHHHHHHH
Q 047321 254 LQL-GSIDIIPVKELGEGECWLLFKQIAFLRRSFEDCEKLEPIGRKIASKCKGLPLAAKVI 313 (807)
Q Consensus 254 ~~~-~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~~~~I~~~c~glPLai~~~ 313 (807)
..+ .....+++..++.++....+.+.+-..+.. --.+.+..|++.++|.+..+..+
T Consensus 166 pTIrSRc~~~~f~~l~~~ei~~~L~~ia~kegi~----is~~al~~La~~s~G~lr~A~~l 222 (620)
T PRK14948 166 PTIISRCQRFDFRRIPLEAMVQHLSEIAEKESIE----IEPEALTLVAQRSQGGLRDAESL 222 (620)
T ss_pred HHHHhheeEEEecCCCHHHHHHHHHHHHHHhCCC----CCHHHHHHHHHHcCCCHHHHHHH
Confidence 222 224678899999999888887766432221 11355789999999988655433
No 112
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=97.96 E-value=0.00015 Score=77.54 Aligned_cols=146 Identities=17% Similarity=0.148 Sum_probs=86.4
Q ss_pred CccccccchHHHHHHHHhCCCCCCCCCceEEEEEccCCChHHHHHHHHHcCcccccccceEEEEEeCCCCCHHHHHHHHH
Q 047321 104 GGVCGRVDEKNELLSKLLCGSSEQQKGLDVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSNTFEEISVAKAII 183 (807)
Q Consensus 104 ~~~vGR~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 183 (807)
.+++|.++..+.+..++..+ ....++.++|++|+||||+|+.+++. .... ...++.+. ... ...+..+
T Consensus 21 ~~~~~~~~~~~~l~~~~~~~-----~~~~~lll~G~~G~GKT~la~~l~~~--~~~~---~~~i~~~~-~~~-~~i~~~l 88 (316)
T PHA02544 21 DECILPAADKETFKSIVKKG-----RIPNMLLHSPSPGTGKTTVAKALCNE--VGAE---VLFVNGSD-CRI-DFVRNRL 88 (316)
T ss_pred HHhcCcHHHHHHHHHHHhcC-----CCCeEEEeeCcCCCCHHHHHHHHHHH--hCcc---ceEeccCc-ccH-HHHHHHH
Confidence 46899999999999988742 23567778999999999999999873 2211 22333333 111 1111111
Q ss_pred HHcCCCCCCCccHHHHHHHHHHH--HhCCceEEEEeCCCCC-CccChHHHHHhhcCCCCCcEEEEEcCCHHH-HHHh-CC
Q 047321 184 EGLGVSAFGLSEFESLMKQIQEY--ITGKKIFLVLDDVWDG-DYKKWDPFFSCLKNGHHESKILITTHDRSV-ALQL-GS 258 (807)
Q Consensus 184 ~~l~~~~~~~~~~~~~~~~l~~~--l~~k~~LlVlDdv~~~-~~~~~~~l~~~l~~~~~gs~IliTTR~~~v-~~~~-~~ 258 (807)
..+ ... +.+.+-++|+||+... .......+...+.....++++|+||..... ...+ ..
T Consensus 89 ~~~-----------------~~~~~~~~~~~vliiDe~d~l~~~~~~~~L~~~le~~~~~~~~Ilt~n~~~~l~~~l~sR 151 (316)
T PHA02544 89 TRF-----------------ASTVSLTGGGKVIIIDEFDRLGLADAQRHLRSFMEAYSKNCSFIITANNKNGIIEPLRSR 151 (316)
T ss_pred HHH-----------------HHhhcccCCCeEEEEECcccccCHHHHHHHHHHHHhcCCCceEEEEcCChhhchHHHHhh
Confidence 111 111 1245668999999654 222233455556555667788888875431 1111 12
Q ss_pred CceEeCCCCChhhHHHHHHH
Q 047321 259 IDIIPVKELGEGECWLLFKQ 278 (807)
Q Consensus 259 ~~~~~l~~L~~~~~~~Lf~~ 278 (807)
...+.++..+.++..+++..
T Consensus 152 ~~~i~~~~p~~~~~~~il~~ 171 (316)
T PHA02544 152 CRVIDFGVPTKEEQIEMMKQ 171 (316)
T ss_pred ceEEEeCCCCHHHHHHHHHH
Confidence 34677777788887766554
No 113
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=97.96 E-value=0.00037 Score=77.13 Aligned_cols=159 Identities=16% Similarity=0.163 Sum_probs=93.4
Q ss_pred ceEEEEEccCCChHHHHHHHHHcCccccccc--ceEEEEEeCCCCCHHHHHHHHHHHcCCCCCCCccHHHHHHHHHHHHh
Q 047321 131 LDVISLVGLGGIGKTTLAQLAYNNDEVKRNF--EKVIWVCVSNTFEEISVAKAIIEGLGVSAFGLSEFESLMKQIQEYIT 208 (807)
Q Consensus 131 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f--~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 208 (807)
...+.|+|+.|+|||+|++.+++. +.... ..+++++. ..+...+...+... ..+ .+.+.++
T Consensus 136 ~n~l~l~G~~G~GKThL~~ai~~~--l~~~~~~~~v~yi~~------~~~~~~~~~~~~~~-----~~~----~~~~~~~ 198 (405)
T TIGR00362 136 YNPLFIYGGVGLGKTHLLHAIGNE--ILENNPNAKVVYVSS------EKFTNDFVNALRNN-----KME----EFKEKYR 198 (405)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHH--HHHhCCCCcEEEEEH------HHHHHHHHHHHHcC-----CHH----HHHHHHH
Confidence 456899999999999999999984 33322 23455542 33344444444321 122 2233333
Q ss_pred CCceEEEEeCCCCCCcc-Ch-HHHHHhhcCC-CCCcEEEEEcCCH-HH--------HHHhCCCceEeCCCCChhhHHHHH
Q 047321 209 GKKIFLVLDDVWDGDYK-KW-DPFFSCLKNG-HHESKILITTHDR-SV--------ALQLGSIDIIPVKELGEGECWLLF 276 (807)
Q Consensus 209 ~k~~LlVlDdv~~~~~~-~~-~~l~~~l~~~-~~gs~IliTTR~~-~v--------~~~~~~~~~~~l~~L~~~~~~~Lf 276 (807)
+ .-+||+||+...... .+ +.+...+... ..|..||+|+... .. ...+.....+++++.+.++-..++
T Consensus 199 ~-~dlLiiDDi~~l~~~~~~~~~l~~~~n~~~~~~~~iiits~~~p~~l~~l~~~l~SRl~~g~~v~i~~pd~~~r~~il 277 (405)
T TIGR00362 199 S-VDLLLIDDIQFLAGKERTQEEFFHTFNALHENGKQIVLTSDRPPKELPGLEERLRSRFEWGLVVDIEPPDLETRLAIL 277 (405)
T ss_pred h-CCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCCEEEecCCCHHHHhhhhhhhhhhccCCeEEEeCCCCHHHHHHHH
Confidence 2 458899999653211 12 2244433321 2345677777642 21 122222346899999999999999
Q ss_pred HHHHhccCCccCccchHHHHHHHHHHcCCCHHHHH
Q 047321 277 KQIAFLRRSFEDCEKLEPIGRKIASKCKGLPLAAK 311 (807)
Q Consensus 277 ~~~a~~~~~~~~~~~~~~~~~~I~~~c~glPLai~ 311 (807)
.+.+-..+. .--.++...|++.+.|..-.+.
T Consensus 278 ~~~~~~~~~----~l~~e~l~~ia~~~~~~~r~l~ 308 (405)
T TIGR00362 278 QKKAEEEGL----ELPDEVLEFIAKNIRSNVRELE 308 (405)
T ss_pred HHHHHHcCC----CCCHHHHHHHHHhcCCCHHHHH
Confidence 998854322 1125678889999998776543
No 114
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.94 E-value=0.00038 Score=80.15 Aligned_cols=176 Identities=15% Similarity=0.160 Sum_probs=111.5
Q ss_pred CccccccchHHHHHHHHhCCCCCCCCCceEEEEEccCCChHHHHHHHHHcCccc---------------------ccccc
Q 047321 104 GGVCGRVDEKNELLSKLLCGSSEQQKGLDVISLVGLGGIGKTTLAQLAYNNDEV---------------------KRNFE 162 (807)
Q Consensus 104 ~~~vGR~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~---------------------~~~f~ 162 (807)
.+++|.+..++.|...+..+ .-...+.++|+.|+||||+|+.+...... ..+|+
T Consensus 17 ~~viGq~~~~~~L~~~i~~~-----~l~hayLf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~Cg~C~sC~~~~~~~~~n 91 (614)
T PRK14971 17 ESVVGQEALTTTLKNAIATN-----KLAHAYLFCGPRGVGKTTCARIFAKTINCQNLTADGEACNECESCVAFNEQRSYN 91 (614)
T ss_pred HHhcCcHHHHHHHHHHHHcC-----CCCeeEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCCCcchHHHHHhcCCCCc
Confidence 46899999999999998742 23466889999999999999887652110 01222
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHHcCCCCCCCccHHHHHHHHHHH----HhCCceEEEEeCCCCCCccChHHHHHhhcCCC
Q 047321 163 KVIWVCVSNTFEEISVAKAIIEGLGVSAFGLSEFESLMKQIQEY----ITGKKIFLVLDDVWDGDYKKWDPFFSCLKNGH 238 (807)
Q Consensus 163 ~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~----l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~ 238 (807)
. ..+...... ..+++...+.+. ..+++-++|+|++..-....++.+...+..-.
T Consensus 92 ~-~~ld~~~~~---------------------~vd~Ir~li~~~~~~P~~~~~KVvIIdea~~Ls~~a~naLLK~LEepp 149 (614)
T PRK14971 92 I-HELDAASNN---------------------SVDDIRNLIEQVRIPPQIGKYKIYIIDEVHMLSQAAFNAFLKTLEEPP 149 (614)
T ss_pred e-EEecccccC---------------------CHHHHHHHHHHHhhCcccCCcEEEEEECcccCCHHHHHHHHHHHhCCC
Confidence 1 111111111 122222222111 23456688999997766667778888887766
Q ss_pred CCcEEEEEc-CCHHHHHHh-CCCceEeCCCCChhhHHHHHHHHHhccCCccCccchHHHHHHHHHHcCCCHHHH
Q 047321 239 HESKILITT-HDRSVALQL-GSIDIIPVKELGEGECWLLFKQIAFLRRSFEDCEKLEPIGRKIASKCKGLPLAA 310 (807)
Q Consensus 239 ~gs~IliTT-R~~~v~~~~-~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~~~~I~~~c~glPLai 310 (807)
..+.+|++| +...+...+ .....+++.+++.++....+.+.+-..+-. --.+.+..|++.++|..--+
T Consensus 150 ~~tifIL~tt~~~kIl~tI~SRc~iv~f~~ls~~ei~~~L~~ia~~egi~----i~~~al~~La~~s~gdlr~a 219 (614)
T PRK14971 150 SYAIFILATTEKHKILPTILSRCQIFDFNRIQVADIVNHLQYVASKEGIT----AEPEALNVIAQKADGGMRDA 219 (614)
T ss_pred CCeEEEEEeCCchhchHHHHhhhheeecCCCCHHHHHHHHHHHHHHcCCC----CCHHHHHHHHHHcCCCHHHH
Confidence 666665554 444444332 235689999999999999998877543321 12346788999999977544
No 115
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=97.94 E-value=2.8e-06 Score=88.56 Aligned_cols=16 Identities=25% Similarity=0.165 Sum_probs=9.6
Q ss_pred ccCCCCCCeEEEEeec
Q 047321 582 LYNQQNLLRLRLRFGR 597 (807)
Q Consensus 582 l~~l~~L~~L~L~~~~ 597 (807)
...+++|+.|.|+.|.
T Consensus 168 ~eqLp~Le~LNls~Nr 183 (505)
T KOG3207|consen 168 AEQLPSLENLNLSSNR 183 (505)
T ss_pred HHhcccchhccccccc
Confidence 4455666666666655
No 116
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=97.94 E-value=0.00012 Score=71.18 Aligned_cols=124 Identities=18% Similarity=0.204 Sum_probs=75.6
Q ss_pred CceEEEEEccCCChHHHHHHHHHcCcccccccceEEEEE---eCCCCCHHHHH------HHHHHHcCCCC------CCCc
Q 047321 130 GLDVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVC---VSNTFEEISVA------KAIIEGLGVSA------FGLS 194 (807)
Q Consensus 130 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~---~~~~~~~~~~~------~~i~~~l~~~~------~~~~ 194 (807)
.-.+++|+|++|+|||||++.++.-. ....+.+++. +. ..+..... -++++.++... ....
T Consensus 24 ~G~~~~l~G~nGsGKStLl~~i~G~~---~~~~G~v~~~g~~~~-~~~~~~~~~~i~~~~q~l~~~gl~~~~~~~~~~LS 99 (180)
T cd03214 24 AGEIVGILGPNGAGKSTLLKTLAGLL---KPSSGEILLDGKDLA-SLSPKELARKIAYVPQALELLGLAHLADRPFNELS 99 (180)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC---CCCCcEEEECCEECC-cCCHHHHHHHHhHHHHHHHHcCCHhHhcCCcccCC
Confidence 45699999999999999999998732 2233344332 21 11222211 12444444321 1223
Q ss_pred cHHHHHHHHHHHHhCCceEEEEeCCCCC-CccChHHHHHhhcCCC-C-CcEEEEEcCCHHHHHHhC
Q 047321 195 EFESLMKQIQEYITGKKIFLVLDDVWDG-DYKKWDPFFSCLKNGH-H-ESKILITTHDRSVALQLG 257 (807)
Q Consensus 195 ~~~~~~~~l~~~l~~k~~LlVlDdv~~~-~~~~~~~l~~~l~~~~-~-gs~IliTTR~~~v~~~~~ 257 (807)
..+...-.+.+.+...+-++++|++... |....+.+...+.... . |..||++|++......+.
T Consensus 100 ~G~~qrl~laral~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tiii~sh~~~~~~~~~ 165 (180)
T cd03214 100 GGERQRVLLARALAQEPPILLLDEPTSHLDIAHQIELLELLRRLARERGKTVVMVLHDLNLAARYA 165 (180)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhC
Confidence 3444455577888889999999999754 4445555666555432 2 678999999987664433
No 117
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=97.94 E-value=1.1e-06 Score=86.72 Aligned_cols=131 Identities=17% Similarity=0.203 Sum_probs=102.7
Q ss_pred Ccc-cceEeccCCcCceeeCcccCCCCCCCCCCCCCCCCCCccccCcccccccccCCCccccchhhhccccCCCCCCccc
Q 047321 632 KLP-LKKLELRDLESVKRVGNEFLGIEESSEDDPSSSSSSPSVIAFPKLKSLEIDGMKELEEWNYRITRKENISIMPRLS 710 (807)
Q Consensus 632 ~L~-L~~L~L~~~~~l~~i~~~~~~~~~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~l~~L~ 710 (807)
... |+.|+|++ +.++.+..+ ..-.|+++.|++++. .+..+. .+..+++|+
T Consensus 282 TWq~LtelDLS~-N~I~~iDES--------------------vKL~Pkir~L~lS~N-~i~~v~-------nLa~L~~L~ 332 (490)
T KOG1259|consen 282 TWQELTELDLSG-NLITQIDES--------------------VKLAPKLRRLILSQN-RIRTVQ-------NLAELPQLQ 332 (490)
T ss_pred hHhhhhhccccc-cchhhhhhh--------------------hhhccceeEEecccc-ceeeeh-------hhhhcccce
Confidence 344 88889987 456666543 346899999999984 554443 356789999
Q ss_pred EEEEccCCCCCCCcccccCCCCccEEeeccCcccccccccccccCCCCCCCCeeeeccCCCcccCC--ccCCCCCccccc
Q 047321 711 SLQIMNCRKLKALPDYLLQTIALQKLSIYSCDLLEELPILEDRRTTDIPRLSSLAIWYCPKLKVLP--DYLLRTTTLQAG 788 (807)
Q Consensus 711 ~L~l~~c~~L~~lp~~l~~l~~L~~L~l~~c~~l~~lP~~~~~~~~~l~~L~~L~i~~c~~l~~lP--~~l~~l~~L~~L 788 (807)
.|+++++ .|.++-.+-..+-+.+.|.+.+ +.++++ .++..+-+|..|++.+ +++..+. .++++|++|+.+
T Consensus 333 ~LDLS~N-~Ls~~~Gwh~KLGNIKtL~La~-N~iE~L-----SGL~KLYSLvnLDl~~-N~Ie~ldeV~~IG~LPCLE~l 404 (490)
T KOG1259|consen 333 LLDLSGN-LLAECVGWHLKLGNIKTLKLAQ-NKIETL-----SGLRKLYSLVNLDLSS-NQIEELDEVNHIGNLPCLETL 404 (490)
T ss_pred Eeecccc-hhHhhhhhHhhhcCEeeeehhh-hhHhhh-----hhhHhhhhheeccccc-cchhhHHHhcccccccHHHHH
Confidence 9999988 7888887767788999999998 578887 5677888999999987 4566554 589999999999
Q ss_pred ccccchhhhhh
Q 047321 789 EQDYENEKFSQ 799 (807)
Q Consensus 789 ~l~~~~~~~~~ 799 (807)
.+.+||+...+
T Consensus 405 ~L~~NPl~~~v 415 (490)
T KOG1259|consen 405 RLTGNPLAGSV 415 (490)
T ss_pred hhcCCCccccc
Confidence 99999987654
No 118
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=97.94 E-value=0.0005 Score=76.44 Aligned_cols=183 Identities=14% Similarity=0.152 Sum_probs=108.8
Q ss_pred CccccccchHHHHHHHHhCCCCCCCCCceEEEEEccCCChHHHHHHHHHcCcccc---------------------cccc
Q 047321 104 GGVCGRVDEKNELLSKLLCGSSEQQKGLDVISLVGLGGIGKTTLAQLAYNNDEVK---------------------RNFE 162 (807)
Q Consensus 104 ~~~vGR~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~---------------------~~f~ 162 (807)
.+++|.+..++.+...+..+. -...+.++|+.|+||||+|+.+++...-. .+++
T Consensus 17 ~diiGq~~~v~~L~~~i~~~~-----i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~c~~c~~C~~i~~~~~~d 91 (451)
T PRK06305 17 SEILGQDAVVAVLKNALRFNR-----AAHAYLFSGIRGTGKTTLARIFAKALNCQNPTEDQEPCNQCASCKEISSGTSLD 91 (451)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-----CceEEEEEcCCCCCHHHHHHHHHHHhcCCCcccCCCCCcccHHHHHHhcCCCCc
Confidence 469999999999999887422 34678899999999999999886521100 0111
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHHcCCCCCCCccHHHHHHHHHHH-HhCCceEEEEeCCCCCCccChHHHHHhhcCCCCCc
Q 047321 163 KVIWVCVSNTFEEISVAKAIIEGLGVSAFGLSEFESLMKQIQEY-ITGKKIFLVLDDVWDGDYKKWDPFFSCLKNGHHES 241 (807)
Q Consensus 163 ~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~-l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs 241 (807)
.+++.-... .+..+...+...+... ..+++-++|+|++..-.....+.+...+......+
T Consensus 92 -~~~i~g~~~------------------~gid~ir~i~~~l~~~~~~~~~kvvIIdead~lt~~~~n~LLk~lEep~~~~ 152 (451)
T PRK06305 92 -VLEIDGASH------------------RGIEDIRQINETVLFTPSKSRYKIYIIDEVHMLTKEAFNSLLKTLEEPPQHV 152 (451)
T ss_pred -eEEeecccc------------------CCHHHHHHHHHHHHhhhhcCCCEEEEEecHHhhCHHHHHHHHHHhhcCCCCc
Confidence 111110000 0111122222111111 23667789999986544445566777776655566
Q ss_pred EEEEEcCC-HHHHHHh-CCCceEeCCCCChhhHHHHHHHHHhccCCccCccchHHHHHHHHHHcCCCHH-HHHHHH
Q 047321 242 KILITTHD-RSVALQL-GSIDIIPVKELGEGECWLLFKQIAFLRRSFEDCEKLEPIGRKIASKCKGLPL-AAKVIG 314 (807)
Q Consensus 242 ~IliTTR~-~~v~~~~-~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~~~~I~~~c~glPL-ai~~~~ 314 (807)
.+|++|.+ ..+...+ .....++++++++++....+.+.+-..+.. --.+.+..|++.++|.+- |+..+-
T Consensus 153 ~~Il~t~~~~kl~~tI~sRc~~v~f~~l~~~el~~~L~~~~~~eg~~----i~~~al~~L~~~s~gdlr~a~~~Le 224 (451)
T PRK06305 153 KFFLATTEIHKIPGTILSRCQKMHLKRIPEETIIDKLALIAKQEGIE----TSREALLPIARAAQGSLRDAESLYD 224 (451)
T ss_pred eEEEEeCChHhcchHHHHhceEEeCCCCCHHHHHHHHHHHHHHcCCC----CCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 66666643 2222221 224579999999999998888776432211 124567889999999764 444443
No 119
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=97.93 E-value=0.00016 Score=69.24 Aligned_cols=126 Identities=21% Similarity=0.228 Sum_probs=81.0
Q ss_pred CceEEEEEccCCChHHHHHHHHHcCcccccccceEEEEE-------------------eCCCC-----------------
Q 047321 130 GLDVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVC-------------------VSNTF----------------- 173 (807)
Q Consensus 130 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~-------------------~~~~~----------------- 173 (807)
.-.|++|+|++|+|||||.+.+-.=+.+ -.+.+|+. |-+.|
T Consensus 27 ~Gevv~iiGpSGSGKSTlLRclN~LE~~---~~G~I~i~g~~~~~~~~~~~~R~~vGmVFQ~fnLFPHlTvleNv~lap~ 103 (240)
T COG1126 27 KGEVVVIIGPSGSGKSTLLRCLNGLEEP---DSGSITVDGEDVGDKKDILKLRRKVGMVFQQFNLFPHLTVLENVTLAPV 103 (240)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHCCcCC---CCceEEECCEeccchhhHHHHHHhcCeecccccccccchHHHHHHhhhH
Confidence 5579999999999999999998542111 12223321 11121
Q ss_pred --------CHHHHHHHHHHHcCCCC------CCCccHHHHHHHHHHHHhCCceEEEEeCCCCC-CccChHHHHHhhcCC-
Q 047321 174 --------EEISVAKAIIEGLGVSA------FGLSEFESLMKQIQEYITGKKIFLVLDDVWDG-DYKKWDPFFSCLKNG- 237 (807)
Q Consensus 174 --------~~~~~~~~i~~~l~~~~------~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~-~~~~~~~l~~~l~~~- 237 (807)
..++...++++.++... .......+..-.|.+.|.=++-++.||++.+. |++...++...+..-
T Consensus 104 ~v~~~~k~eA~~~A~~lL~~VGL~~ka~~yP~qLSGGQqQRVAIARALaM~P~vmLFDEPTSALDPElv~EVL~vm~~LA 183 (240)
T COG1126 104 KVKKLSKAEAREKALELLEKVGLADKADAYPAQLSGGQQQRVAIARALAMDPKVMLFDEPTSALDPELVGEVLDVMKDLA 183 (240)
T ss_pred HHcCCCHHHHHHHHHHHHHHcCchhhhhhCccccCcHHHHHHHHHHHHcCCCCEEeecCCcccCCHHHHHHHHHHHHHHH
Confidence 11233444455555431 22344455566788999999999999999775 665556665555443
Q ss_pred CCCcEEEEEcCCHHHHHHhCC
Q 047321 238 HHESKILITTHDRSVALQLGS 258 (807)
Q Consensus 238 ~~gs~IliTTR~~~v~~~~~~ 258 (807)
..|-..|+.|++-..|..+..
T Consensus 184 ~eGmTMivVTHEM~FAr~Vad 204 (240)
T COG1126 184 EEGMTMIIVTHEMGFAREVAD 204 (240)
T ss_pred HcCCeEEEEechhHHHHHhhh
Confidence 467789999999888887655
No 120
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=97.93 E-value=0.00049 Score=71.22 Aligned_cols=166 Identities=17% Similarity=0.264 Sum_probs=105.4
Q ss_pred cCCccccccchHHHHHHHHhCCCCCCCCCceEEEEEccCCChHHHHHHHHHcCcccccccceEEEEEeCCCCCHHHHHHH
Q 047321 102 DEGGVCGRVDEKNELLSKLLCGSSEQQKGLDVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSNTFEEISVAKA 181 (807)
Q Consensus 102 ~~~~~vGR~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~ 181 (807)
.++.|.+|+.++..+..++...+ ..-...|.|.|-+|.|||.+.+.+++... . ..+|+++-..++.+.++..
T Consensus 4 l~~~v~~Re~qi~~L~~Llg~~~---~~~PS~~~iyG~sgTGKT~~~r~~l~~~n--~---~~vw~n~~ecft~~~lle~ 75 (438)
T KOG2543|consen 4 LEPNVPCRESQIRRLKSLLGNNS---CTIPSIVHIYGHSGTGKTYLVRQLLRKLN--L---ENVWLNCVECFTYAILLEK 75 (438)
T ss_pred cccCccchHHHHHHHHHHhCCCC---cccceeEEEeccCCCchhHHHHHHHhhcC--C---cceeeehHHhccHHHHHHH
Confidence 35679999999999999887654 22456669999999999999999998542 1 3589999999999999999
Q ss_pred HHHHcCCCCCCC-------ccHHHHHHHHHHH--H--hCCceEEEEeCCCCCCccChHH-HHHhh---cC--CCCCcEEE
Q 047321 182 IIEGLGVSAFGL-------SEFESLMKQIQEY--I--TGKKIFLVLDDVWDGDYKKWDP-FFSCL---KN--GHHESKIL 244 (807)
Q Consensus 182 i~~~l~~~~~~~-------~~~~~~~~~l~~~--l--~~k~~LlVlDdv~~~~~~~~~~-l~~~l---~~--~~~gs~Il 244 (807)
|+........+. ....+....+.++ . +++.++||||++..- .+.+. +...+ .. ..+.. +|
T Consensus 76 IL~~~~~~d~dg~~~~~~~en~~d~i~~l~q~~~~t~~d~~~~liLDnad~l--rD~~a~ll~~l~~L~el~~~~~i-~i 152 (438)
T KOG2543|consen 76 ILNKSQLADKDGDKVEGDAENFSDFIYLLVQWPAATNRDQKVFLILDNADAL--RDMDAILLQCLFRLYELLNEPTI-VI 152 (438)
T ss_pred HHHHhccCCCchhhhhhHHHHHHHHHHHHHhhHHhhccCceEEEEEcCHHhh--hccchHHHHHHHHHHHHhCCCce-EE
Confidence 999985222111 1122223333332 1 246899999999432 22222 11111 11 12333 33
Q ss_pred EEcCC--HHHHH-HhCCC--ceEeCCCCChhhHHHHHHH
Q 047321 245 ITTHD--RSVAL-QLGSI--DIIPVKELGEGECWLLFKQ 278 (807)
Q Consensus 245 iTTR~--~~v~~-~~~~~--~~~~l~~L~~~~~~~Lf~~ 278 (807)
+++-- +..-. .++.. -++..+..+.+|..+++.+
T Consensus 153 ils~~~~e~~y~~n~g~~~i~~l~fP~Ys~~e~~~Il~~ 191 (438)
T KOG2543|consen 153 ILSAPSCEKQYLINTGTLEIVVLHFPQYSVEETQVILSR 191 (438)
T ss_pred EEeccccHHHhhcccCCCCceEEecCCCCHHHHHHHHhc
Confidence 33332 22221 13443 3567788999999888865
No 121
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=97.92 E-value=5.9e-06 Score=78.54 Aligned_cols=106 Identities=18% Similarity=0.238 Sum_probs=32.7
Q ss_pred cCcccccccccCCCccccchhhhccccCCC-CCCcccEEEEccCCCCCCCcccccCCCCccEEeeccCcccccccccccc
Q 047321 675 AFPKLKSLEIDGMKELEEWNYRITRKENIS-IMPRLSSLQIMNCRKLKALPDYLLQTIALQKLSIYSCDLLEELPILEDR 753 (807)
Q Consensus 675 ~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~-~l~~L~~L~l~~c~~L~~lp~~l~~l~~L~~L~l~~c~~l~~lP~~~~~ 753 (807)
+..+++.|+|.++ .++.+. .++ .+.+|+.|++++| .++.++ ++..+++|++|++++ +.+.+++ .
T Consensus 17 n~~~~~~L~L~~n-~I~~Ie-------~L~~~l~~L~~L~Ls~N-~I~~l~-~l~~L~~L~~L~L~~-N~I~~i~----~ 81 (175)
T PF14580_consen 17 NPVKLRELNLRGN-QISTIE-------NLGATLDKLEVLDLSNN-QITKLE-GLPGLPRLKTLDLSN-NRISSIS----E 81 (175)
T ss_dssp ---------------------------S--TT-TT--EEE-TTS---S--T-T----TT--EEE--S-S---S-C----H
T ss_pred ccccccccccccc-cccccc-------chhhhhcCCCEEECCCC-CCcccc-CccChhhhhhcccCC-CCCCccc----c
Confidence 4445677777764 343332 222 4667777777777 666666 566677777777776 4566664 2
Q ss_pred cC-CCCCCCCeeeeccCCCcccCC--ccCCCCCcccccccccchhh
Q 047321 754 RT-TDIPRLSSLAIWYCPKLKVLP--DYLLRTTTLQAGEQDYENEK 796 (807)
Q Consensus 754 ~~-~~l~~L~~L~i~~c~~l~~lP--~~l~~l~~L~~L~l~~~~~~ 796 (807)
.+ ..+|+|++|.+++ +++..+. ..+..+++|+.|++.+||+.
T Consensus 82 ~l~~~lp~L~~L~L~~-N~I~~l~~l~~L~~l~~L~~L~L~~NPv~ 126 (175)
T PF14580_consen 82 GLDKNLPNLQELYLSN-NKISDLNELEPLSSLPKLRVLSLEGNPVC 126 (175)
T ss_dssp HHHHH-TT--EEE-TT-S---SCCCCGGGGG-TT--EEE-TT-GGG
T ss_pred chHHhCCcCCEEECcC-CcCCChHHhHHHHcCCCcceeeccCCccc
Confidence 22 2467777777765 4455443 34556777777777777764
No 122
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=97.92 E-value=6.2e-07 Score=92.01 Aligned_cols=57 Identities=26% Similarity=0.444 Sum_probs=49.4
Q ss_pred CcceEEEEEeeccCCC-CccccCCCCceeEEEeCCCCCCCCCCCCccccc-cccCcccceeeecc
Q 047321 466 GDKVRHLGLKFEEGAS-FPMSIHGLNRLRTLLIYDQSPYNPSLSSSILPE-LFNKLACLRALVIR 528 (807)
Q Consensus 466 ~~~~r~L~l~~~~~~~-~~~~~~~l~~Lr~L~l~~~~~~~l~~~i~~LP~-~i~~L~~L~~LdL~ 528 (807)
.+++|+|++++|.++. -|..|..+++|-+|.+.++. .|+.||+ .+++|..|+-|.+.
T Consensus 90 l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~N------kI~~l~k~~F~gL~slqrLllN 148 (498)
T KOG4237|consen 90 LHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNN------KITDLPKGAFGGLSSLQRLLLN 148 (498)
T ss_pred hhhhceecccccchhhcChHhhhhhHhhhHHHhhcCC------chhhhhhhHhhhHHHHHHHhcC
Confidence 5789999999999987 58899999999999888832 8999995 58999999999887
No 123
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=97.92 E-value=3.8e-07 Score=97.75 Aligned_cols=146 Identities=21% Similarity=0.260 Sum_probs=107.8
Q ss_pred cceEEEEEeeccCCCCccccCCCCceeEEEeCCCCCCCCCCCCccccccccCcccceeeecc-ccCCc---------cCe
Q 047321 467 DKVRHLGLKFEEGASFPMSIHGLNRLRTLLIYDQSPYNPSLSSSILPELFNKLACLRALVIR-QSLRT---------LEK 536 (807)
Q Consensus 467 ~~~r~L~l~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~l~~~i~~LP~~i~~L~~L~~LdL~-~~L~~---------L~~ 536 (807)
......+++.|.+..+|..++.+..|..|.++.| .+..+|..|++|..|.||||+ +.++. |+.
T Consensus 75 tdt~~aDlsrNR~~elp~~~~~f~~Le~liLy~n-------~~r~ip~~i~~L~~lt~l~ls~NqlS~lp~~lC~lpLkv 147 (722)
T KOG0532|consen 75 TDTVFADLSRNRFSELPEEACAFVSLESLILYHN-------CIRTIPEAICNLEALTFLDLSSNQLSHLPDGLCDLPLKV 147 (722)
T ss_pred cchhhhhccccccccCchHHHHHHHHHHHHHHhc-------cceecchhhhhhhHHHHhhhccchhhcCChhhhcCccee
Confidence 4456677888988889999999999999999998 889999999999999999998 44444 455
Q ss_pred eEecCccCCCccccccccccccccCcccccCCCCCCChhHHHHhhccCCCCCCeEEEEeeccCCCcchhhhhchhhHHHH
Q 047321 537 FVVGGGVDGSNTCRLESLKNLQLLRECGIEGLGNVSHLDEAERLQLYNQQNLLRLRLRFGRVVDGEDEERRRKNEKDKQL 616 (807)
Q Consensus 537 l~~~~~~~~~~~~~i~~L~~L~~L~~L~i~~l~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~ 616 (807)
+.+.++.. ...+.+++.+..|..|+.+..+- ...++.++++.+|+.|.+..|.+
T Consensus 148 li~sNNkl---~~lp~~ig~~~tl~~ld~s~nei-----~slpsql~~l~slr~l~vrRn~l------------------ 201 (722)
T KOG0532|consen 148 LIVSNNKL---TSLPEEIGLLPTLAHLDVSKNEI-----QSLPSQLGYLTSLRDLNVRRNHL------------------ 201 (722)
T ss_pred EEEecCcc---ccCCcccccchhHHHhhhhhhhh-----hhchHHhhhHHHHHHHHHhhhhh------------------
Confidence 66666653 33344455555566565554221 12344678888999998888874
Q ss_pred HHhhcCCCCCCCC-CCCcccceEeccCCcCceeeCcccC
Q 047321 617 LEALQPPLSHLPP-LGKLPLKKLELRDLESVKRVGNEFL 654 (807)
Q Consensus 617 l~~l~p~~~~lp~-l~~L~L~~L~L~~~~~l~~i~~~~~ 654 (807)
..+|. +..|||..|+++ |+.+.++|..|.
T Consensus 202 --------~~lp~El~~LpLi~lDfS-cNkis~iPv~fr 231 (722)
T KOG0532|consen 202 --------EDLPEELCSLPLIRLDFS-CNKISYLPVDFR 231 (722)
T ss_pred --------hhCCHHHhCCceeeeecc-cCceeecchhhh
Confidence 34554 667889999997 688999998765
No 124
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=97.92 E-value=6.1e-06 Score=86.11 Aligned_cols=112 Identities=15% Similarity=0.014 Sum_probs=69.9
Q ss_pred CcceEEEEEeeccCCCCc--cccCCCCceeEEEeCCCCCCCCCCCCccccccccCcccceeeeccccCCccCeeEecCcc
Q 047321 466 GDKVRHLGLKFEEGASFP--MSIHGLNRLRTLLIYDQSPYNPSLSSSILPELFNKLACLRALVIRQSLRTLEKFVVGGGV 543 (807)
Q Consensus 466 ~~~~r~L~l~~~~~~~~~--~~~~~l~~Lr~L~l~~~~~~~l~~~i~~LP~~i~~L~~L~~LdL~~~L~~L~~l~~~~~~ 543 (807)
.+++|.+++.+......+ .....|+++|.|+|++|- -+....+-+-+..|++|+.|+|+.|.-....
T Consensus 120 ~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL----~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~------- 188 (505)
T KOG3207|consen 120 LKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNL----FHNWFPVLKIAEQLPSLENLNLSSNRLSNFI------- 188 (505)
T ss_pred HHhhhheeecCccccccchhhhhhhCCcceeecchhhh----HHhHHHHHHHHHhcccchhcccccccccCCc-------
Confidence 578999999988876544 356789999999999961 1133344456778899999999844222111
Q ss_pred CCCccccccccccccccCcccccCCCCCCChhHHHHhhccCCCCCCeEEEEeec
Q 047321 544 DGSNTCRLESLKNLQLLRECGIEGLGNVSHLDEAERLQLYNQQNLLRLRLRFGR 597 (807)
Q Consensus 544 ~~~~~~~i~~L~~L~~L~~L~i~~l~~~~~~~~~~~~~l~~l~~L~~L~L~~~~ 597 (807)
...... .+.+|+.|.++.+.- + .....-.+..+++|+.|+|..|.
T Consensus 189 ----~s~~~~--~l~~lK~L~l~~CGl-s--~k~V~~~~~~fPsl~~L~L~~N~ 233 (505)
T KOG3207|consen 189 ----SSNTTL--LLSHLKQLVLNSCGL-S--WKDVQWILLTFPSLEVLYLEANE 233 (505)
T ss_pred ----cccchh--hhhhhheEEeccCCC-C--HHHHHHHHHhCCcHHHhhhhccc
Confidence 001111 344555555555321 1 22333346678899999998874
No 125
>PRK06620 hypothetical protein; Validated
Probab=97.92 E-value=0.00063 Score=67.69 Aligned_cols=135 Identities=14% Similarity=0.089 Sum_probs=81.6
Q ss_pred eEEEEEccCCChHHHHHHHHHcCcccccccceEEEEEeCCCCCHHHHHHHHHHHcCCCCCCCccHHHHHHHHHHHHhCCc
Q 047321 132 DVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSNTFEEISVAKAIIEGLGVSAFGLSEFESLMKQIQEYITGKK 211 (807)
Q Consensus 132 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~ 211 (807)
+.+.|+|+.|+|||+|++.+++... . .++. ..+.. + +.. +..
T Consensus 45 ~~l~l~Gp~G~GKThLl~a~~~~~~--~-----~~~~--~~~~~---------------------~-------~~~-~~~ 86 (214)
T PRK06620 45 FTLLIKGPSSSGKTYLTKIWQNLSN--A-----YIIK--DIFFN---------------------E-------EIL-EKY 86 (214)
T ss_pred ceEEEECCCCCCHHHHHHHHHhccC--C-----EEcc--hhhhc---------------------h-------hHH-hcC
Confidence 6799999999999999999887421 1 1111 00000 0 011 234
Q ss_pred eEEEEeCCCCCCccChHHHHHhhcCC-CCCcEEEEEcCCHH-------HHHHhCCCceEeCCCCChhhHHHHHHHHHhcc
Q 047321 212 IFLVLDDVWDGDYKKWDPFFSCLKNG-HHESKILITTHDRS-------VALQLGSIDIIPVKELGEGECWLLFKQIAFLR 283 (807)
Q Consensus 212 ~LlVlDdv~~~~~~~~~~l~~~l~~~-~~gs~IliTTR~~~-------v~~~~~~~~~~~l~~L~~~~~~~Lf~~~a~~~ 283 (807)
-+|++||+..-.. ..+...+... ..|..||+|++... ....+...-+++++++++++-..++.+.+...
T Consensus 87 d~lliDdi~~~~~---~~lf~l~N~~~e~g~~ilits~~~p~~l~l~~L~SRl~~gl~~~l~~pd~~~~~~~l~k~~~~~ 163 (214)
T PRK06620 87 NAFIIEDIENWQE---PALLHIFNIINEKQKYLLLTSSDKSRNFTLPDLSSRIKSVLSILLNSPDDELIKILIFKHFSIS 163 (214)
T ss_pred CEEEEeccccchH---HHHHHHHHHHHhcCCEEEEEcCCCccccchHHHHHHHhCCceEeeCCCCHHHHHHHHHHHHHHc
Confidence 5788999952211 1233332211 34668999987432 33334445589999999999888888876432
Q ss_pred CCccCccchHHHHHHHHHHcCCCHHHHH
Q 047321 284 RSFEDCEKLEPIGRKIASKCKGLPLAAK 311 (807)
Q Consensus 284 ~~~~~~~~~~~~~~~I~~~c~glPLai~ 311 (807)
+- .--+++...|++.+.|---.+.
T Consensus 164 ~l----~l~~ev~~~L~~~~~~d~r~l~ 187 (214)
T PRK06620 164 SV----TISRQIIDFLLVNLPREYSKII 187 (214)
T ss_pred CC----CCCHHHHHHHHHHccCCHHHHH
Confidence 11 1225678888888888655443
No 126
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=97.91 E-value=0.00013 Score=86.63 Aligned_cols=155 Identities=21% Similarity=0.212 Sum_probs=85.7
Q ss_pred ccccccchHHHHHHHHhCCCCCCCCCceEEEEEccCCChHHHHHHHHHcCc---cccccc-ceEEEEEeCCCCCHHHHHH
Q 047321 105 GVCGRVDEKNELLSKLLCGSSEQQKGLDVISLVGLGGIGKTTLAQLAYNND---EVKRNF-EKVIWVCVSNTFEEISVAK 180 (807)
Q Consensus 105 ~~vGR~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~---~~~~~f-~~~~wv~~~~~~~~~~~~~ 180 (807)
.++||+++++++++.|... ...-+.++|++|+|||++|+.++... .+...+ +..+|.. +...+
T Consensus 183 ~~igr~~ei~~~~~~L~~~------~~~n~lL~G~pG~GKT~l~~~la~~~~~~~~p~~l~~~~~~~~-----~~~~l-- 249 (731)
T TIGR02639 183 PLIGREDELERTIQVLCRR------KKNNPLLVGEPGVGKTAIAEGLALRIAEGKVPENLKNAKIYSL-----DMGSL-- 249 (731)
T ss_pred cccCcHHHHHHHHHHHhcC------CCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCeEEEe-----cHHHH--
Confidence 5899999999999998743 33456799999999999999988731 111111 2334421 11111
Q ss_pred HHHHHcCCCCCCCccHHHHHHHHHHHH-hCCceEEEEeCCCCCC---------ccChHHHHHhhcCCCCCcEEEEEcCCH
Q 047321 181 AIIEGLGVSAFGLSEFESLMKQIQEYI-TGKKIFLVLDDVWDGD---------YKKWDPFFSCLKNGHHESKILITTHDR 250 (807)
Q Consensus 181 ~i~~~l~~~~~~~~~~~~~~~~l~~~l-~~k~~LlVlDdv~~~~---------~~~~~~l~~~l~~~~~gs~IliTTR~~ 250 (807)
... .. -..+.+.....+.+.+ ..++.+|++|++..-. ...-+.++..+..+ .-++|-+|...
T Consensus 250 --~a~---~~-~~g~~e~~l~~i~~~~~~~~~~ILfiDEih~l~~~g~~~~~~~~~~~~L~~~l~~g--~i~~IgaTt~~ 321 (731)
T TIGR02639 250 --LAG---TK-YRGDFEERLKAVVSEIEKEPNAILFIDEIHTIVGAGATSGGSMDASNLLKPALSSG--KLRCIGSTTYE 321 (731)
T ss_pred --hhh---cc-ccchHHHHHHHHHHHHhccCCeEEEEecHHHHhccCCCCCccHHHHHHHHHHHhCC--CeEEEEecCHH
Confidence 110 00 0112233333333333 3468899999985210 11122244444322 12445444432
Q ss_pred HHHHHh-------CCCceEeCCCCChhhHHHHHHHHH
Q 047321 251 SVALQL-------GSIDIIPVKELGEGECWLLFKQIA 280 (807)
Q Consensus 251 ~v~~~~-------~~~~~~~l~~L~~~~~~~Lf~~~a 280 (807)
+..... .-...+++++++.++..+++....
T Consensus 322 e~~~~~~~d~al~rRf~~i~v~~p~~~~~~~il~~~~ 358 (731)
T TIGR02639 322 EYKNHFEKDRALSRRFQKIDVGEPSIEETVKILKGLK 358 (731)
T ss_pred HHHHHhhhhHHHHHhCceEEeCCCCHHHHHHHHHHHH
Confidence 221111 113478999999999999998654
No 127
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=97.90 E-value=0.00046 Score=72.79 Aligned_cols=196 Identities=14% Similarity=0.175 Sum_probs=114.7
Q ss_pred CccccccchHHHHHHHHhCCCCCCCCCceEEEEEccCCChHHHHHHHHHcCc---c---------c-ccccceEEEEEeC
Q 047321 104 GGVCGRVDEKNELLSKLLCGSSEQQKGLDVISLVGLGGIGKTTLAQLAYNND---E---------V-KRNFEKVIWVCVS 170 (807)
Q Consensus 104 ~~~vGR~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~---~---------~-~~~f~~~~wv~~~ 170 (807)
.+++|.++.++.+...+..+. -...+.++|+.|+||+++|..++... . + ...++-..|+.-.
T Consensus 4 ~~iiGq~~~~~~L~~~i~~~r-----l~ha~Lf~G~~G~Gk~~~A~~~a~~llc~~~c~~c~~~~~~~~~hPDl~~i~p~ 78 (314)
T PRK07399 4 ANLIGQPLAIELLTAAIKQNR-----IAPAYLFAGPEGVGRKLAALCFIEGLLSQGSPSKNIRRRLEEGNHPDLLWVEPT 78 (314)
T ss_pred HHhCCHHHHHHHHHHHHHhCC-----CCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCCcHhcccccCCCCCEEEEecc
Confidence 368999999999999987432 35789999999999999997765421 0 0 1122333444321
Q ss_pred CCCCHHHHHHHHHHHcC--CCCCCCccHHHHHHHHHHHH-----hCCceEEEEeCCCCCCccChHHHHHhhcCCCCCcEE
Q 047321 171 NTFEEISVAKAIIEGLG--VSAFGLSEFESLMKQIQEYI-----TGKKIFLVLDDVWDGDYKKWDPFFSCLKNGHHESKI 243 (807)
Q Consensus 171 ~~~~~~~~~~~i~~~l~--~~~~~~~~~~~~~~~l~~~l-----~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~I 243 (807)
...+...+...-++..+ .........++. +.+.+.+ .+.+-++|+|++...+......++..+..-. .+.+
T Consensus 79 ~~~~g~~~~~~~~~~~~~~~~~~~~I~id~i-r~i~~~l~~~p~~~~~kVvII~~ae~m~~~aaNaLLK~LEEPp-~~~f 156 (314)
T PRK07399 79 YQHQGKLITASEAEEAGLKRKAPPQIRLEQI-REIKRFLSRPPLEAPRKVVVIEDAETMNEAAANALLKTLEEPG-NGTL 156 (314)
T ss_pred ccccccccchhhhhhccccccccccCcHHHH-HHHHHHHccCcccCCceEEEEEchhhcCHHHHHHHHHHHhCCC-CCeE
Confidence 11111101111111221 111111222332 2333333 3567799999997666667777888886655 4456
Q ss_pred EEEcCCH-HHHHHh-CCCceEeCCCCChhhHHHHHHHHHhccCCccCccchHHHHHHHHHHcCCCHHHHHHH
Q 047321 244 LITTHDR-SVALQL-GSIDIIPVKELGEGECWLLFKQIAFLRRSFEDCEKLEPIGRKIASKCKGLPLAAKVI 313 (807)
Q Consensus 244 liTTR~~-~v~~~~-~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~~~~I~~~c~glPLai~~~ 313 (807)
|++|.+. .+...+ .-...+++.++++++..+.+.+...... .......++..++|.|..+..+
T Consensus 157 ILi~~~~~~Ll~TI~SRcq~i~f~~l~~~~~~~~L~~~~~~~~-------~~~~~~~l~~~a~Gs~~~al~~ 221 (314)
T PRK07399 157 ILIAPSPESLLPTIVSRCQIIPFYRLSDEQLEQVLKRLGDEEI-------LNINFPELLALAQGSPGAAIAN 221 (314)
T ss_pred EEEECChHhCcHHHHhhceEEecCCCCHHHHHHHHHHhhcccc-------chhHHHHHHHHcCCCHHHHHHH
Confidence 6555543 333322 2356899999999999999987642111 1111367899999999765543
No 128
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=97.89 E-value=0.00023 Score=70.29 Aligned_cols=124 Identities=19% Similarity=0.231 Sum_probs=72.3
Q ss_pred CccCCccccccchHHHHHHHHhCCCCCCCCCceEEEEEccCCChHHHHHHHHHcCcccccccceEEEEEeCCCCCHHHHH
Q 047321 100 LIDEGGVCGRVDEKNELLSKLLCGSSEQQKGLDVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSNTFEEISVA 179 (807)
Q Consensus 100 ~~~~~~~vGR~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~ 179 (807)
.+.-.+++|.+.+++.|++--..=-. .....-+.++|..|+|||++++.+.+...-+. . + -|.+
T Consensus 23 ~~~l~~L~Gie~Qk~~l~~Nt~~Fl~--G~pannvLL~G~rGtGKSSlVkall~~y~~~G-L--R-lIev---------- 86 (249)
T PF05673_consen 23 PIRLDDLIGIERQKEALIENTEQFLQ--GLPANNVLLWGARGTGKSSLVKALLNEYADQG-L--R-LIEV---------- 86 (249)
T ss_pred CCCHHHhcCHHHHHHHHHHHHHHHHc--CCCCcceEEecCCCCCHHHHHHHHHHHHhhcC-c--e-EEEE----------
Confidence 34446799999999988765422111 33566788899999999999999987211111 1 1 1111
Q ss_pred HHHHHHcCCCCCCCccHHHHHHHHHHHHhCCceEEEEeCCCCC-CccChHHHHHhhcCC---CCCcEEEEEcCCH
Q 047321 180 KAIIEGLGVSAFGLSEFESLMKQIQEYITGKKIFLVLDDVWDG-DYKKWDPFFSCLKNG---HHESKILITTHDR 250 (807)
Q Consensus 180 ~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~-~~~~~~~l~~~l~~~---~~gs~IliTTR~~ 250 (807)
...+..+...+.+.++. ...||+|.+||+.-+ +...+..++..|.-+ .+...+|..|-|+
T Consensus 87 ---------~k~~L~~l~~l~~~l~~--~~~kFIlf~DDLsFe~~d~~yk~LKs~LeGgle~~P~NvliyATSNR 150 (249)
T PF05673_consen 87 ---------SKEDLGDLPELLDLLRD--RPYKFILFCDDLSFEEGDTEYKALKSVLEGGLEARPDNVLIYATSNR 150 (249)
T ss_pred ---------CHHHhccHHHHHHHHhc--CCCCEEEEecCCCCCCCcHHHHHHHHHhcCccccCCCcEEEEEecch
Confidence 11122333444444432 357999999998433 344566666666533 2334455555554
No 129
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=97.89 E-value=0.00011 Score=70.47 Aligned_cols=107 Identities=20% Similarity=0.112 Sum_probs=67.8
Q ss_pred CceEEEEEccCCChHHHHHHHHHcCcccccccceEEEEE------eCCCCCHHHHHHHHHHHcCCCCCCCccHHHHHHHH
Q 047321 130 GLDVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVC------VSNTFEEISVAKAIIEGLGVSAFGLSEFESLMKQI 203 (807)
Q Consensus 130 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~------~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l 203 (807)
.-.+++|+|++|+|||||++.+..-.. ...+.+++. +.+... ....+...-.+
T Consensus 24 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~~---p~~G~i~~~g~~i~~~~q~~~------------------LSgGq~qrv~l 82 (177)
T cd03222 24 EGEVIGIVGPNGTGKTTAVKILAGQLI---PNGDNDEWDGITPVYKPQYID------------------LSGGELQRVAI 82 (177)
T ss_pred CCCEEEEECCCCChHHHHHHHHHcCCC---CCCcEEEECCEEEEEEcccCC------------------CCHHHHHHHHH
Confidence 456999999999999999999986322 122222221 111111 33334445567
Q ss_pred HHHHhCCceEEEEeCCCCC-CccChHHHHHhhcCC-CC-CcEEEEEcCCHHHHHHhC
Q 047321 204 QEYITGKKIFLVLDDVWDG-DYKKWDPFFSCLKNG-HH-ESKILITTHDRSVALQLG 257 (807)
Q Consensus 204 ~~~l~~k~~LlVlDdv~~~-~~~~~~~l~~~l~~~-~~-gs~IliTTR~~~v~~~~~ 257 (807)
.+.+..++-++++|+.... |....+.+...+... .. +..||++|++......+.
T Consensus 83 aral~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~~~ 139 (177)
T cd03222 83 AAALLRNATFYLFDEPSAYLDIEQRLNAARAIRRLSEEGKKTALVVEHDLAVLDYLS 139 (177)
T ss_pred HHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEECCHHHHHHhC
Confidence 7788889999999999664 444444455555432 22 367999999987766543
No 130
>CHL00181 cbbX CbbX; Provisional
Probab=97.89 E-value=0.00052 Score=71.56 Aligned_cols=136 Identities=11% Similarity=0.032 Sum_probs=72.8
Q ss_pred ceEEEEEccCCChHHHHHHHHHcCcccccccceEEEEEeCCCCCHHHHHHHHHHHcCCCCCCCccHHHHHHHHHHHHhCC
Q 047321 131 LDVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSNTFEEISVAKAIIEGLGVSAFGLSEFESLMKQIQEYITGK 210 (807)
Q Consensus 131 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k 210 (807)
...+.++|++|+||||+|+.++........-...-|+.++ ...+ .....+. . .......+.+ ..
T Consensus 59 ~~~ill~G~pGtGKT~lAr~la~~~~~~g~~~~~~~~~v~----~~~l----~~~~~g~----~-~~~~~~~l~~---a~ 122 (287)
T CHL00181 59 GLHMSFTGSPGTGKTTVALKMADILYKLGYIKKGHLLTVT----RDDL----VGQYIGH----T-APKTKEVLKK---AM 122 (287)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHcCCCCCCceEEec----HHHH----HHHHhcc----c-hHHHHHHHHH---cc
Confidence 3458899999999999999997631111111111244443 1112 1111111 0 1111122222 12
Q ss_pred ceEEEEeCCCCC---------CccChHHHHHhhcCCCCCcEEEEEcCCHHHHHHhC--------CCceEeCCCCChhhHH
Q 047321 211 KIFLVLDDVWDG---------DYKKWDPFFSCLKNGHHESKILITTHDRSVALQLG--------SIDIIPVKELGEGECW 273 (807)
Q Consensus 211 ~~LlVlDdv~~~---------~~~~~~~l~~~l~~~~~gs~IliTTR~~~v~~~~~--------~~~~~~l~~L~~~~~~ 273 (807)
.-+|++|++..- ..+..+.+...+.....+.+||+++....+..... -...+.+++++.++..
T Consensus 123 ggVLfIDE~~~l~~~~~~~~~~~e~~~~L~~~me~~~~~~~vI~ag~~~~~~~~~~~np~L~sR~~~~i~F~~~t~~el~ 202 (287)
T CHL00181 123 GGVLFIDEAYYLYKPDNERDYGSEAIEILLQVMENQRDDLVVIFAGYKDRMDKFYESNPGLSSRIANHVDFPDYTPEELL 202 (287)
T ss_pred CCEEEEEccchhccCCCccchHHHHHHHHHHHHhcCCCCEEEEEeCCcHHHHHHHhcCHHHHHhCCceEEcCCcCHHHHH
Confidence 359999999531 11222334444545555567777776444322211 1347899999999999
Q ss_pred HHHHHHHhc
Q 047321 274 LLFKQIAFL 282 (807)
Q Consensus 274 ~Lf~~~a~~ 282 (807)
+++...+-.
T Consensus 203 ~I~~~~l~~ 211 (287)
T CHL00181 203 QIAKIMLEE 211 (287)
T ss_pred HHHHHHHHH
Confidence 998887643
No 131
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=97.88 E-value=0.00016 Score=69.03 Aligned_cols=120 Identities=17% Similarity=0.104 Sum_probs=71.2
Q ss_pred CceEEEEEccCCChHHHHHHHHHcCcccc-c--ccc---eEEEEEeCCCCCHHHHHHHHHHHcCCCCCCCccHHHHHHHH
Q 047321 130 GLDVISLVGLGGIGKTTLAQLAYNNDEVK-R--NFE---KVIWVCVSNTFEEISVAKAIIEGLGVSAFGLSEFESLMKQI 203 (807)
Q Consensus 130 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~-~--~f~---~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l 203 (807)
.-.+++|+|++|+|||||++.+..-.... + .++ .+.++.-...+....+.+.+... ........+...-.+
T Consensus 26 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~~~i~~~~q~~~~~~~tv~~nl~~~---~~~~LS~G~~~rv~l 102 (166)
T cd03223 26 PGDRLLITGPSGTGKSSLFRALAGLWPWGSGRIGMPEGEDLLFLPQRPYLPLGTLREQLIYP---WDDVLSGGEQQRLAF 102 (166)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCCceEEEECCCCccccccHHHHhhcc---CCCCCCHHHHHHHHH
Confidence 45699999999999999999998642211 1 111 12222111111111233333211 222334445555667
Q ss_pred HHHHhCCceEEEEeCCCCC-CccChHHHHHhhcCCCCCcEEEEEcCCHHHHH
Q 047321 204 QEYITGKKIFLVLDDVWDG-DYKKWDPFFSCLKNGHHESKILITTHDRSVAL 254 (807)
Q Consensus 204 ~~~l~~k~~LlVlDdv~~~-~~~~~~~l~~~l~~~~~gs~IliTTR~~~v~~ 254 (807)
.+.+..++-++++|+.... |......+...+... +..||++|++.....
T Consensus 103 aral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~--~~tiiivsh~~~~~~ 152 (166)
T cd03223 103 ARLLLHKPKFVFLDEATSALDEESEDRLYQLLKEL--GITVISVGHRPSLWK 152 (166)
T ss_pred HHHHHcCCCEEEEECCccccCHHHHHHHHHHHHHh--CCEEEEEeCChhHHh
Confidence 7888889999999999664 444455565655543 467999999987653
No 132
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=97.87 E-value=0.00012 Score=70.86 Aligned_cols=115 Identities=17% Similarity=0.115 Sum_probs=68.6
Q ss_pred CceEEEEEccCCChHHHHHHHHHcCcccccccceEEEEEe-----------------CCCCC--HHHHHHHHHHHcCCCC
Q 047321 130 GLDVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCV-----------------SNTFE--EISVAKAIIEGLGVSA 190 (807)
Q Consensus 130 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~-----------------~~~~~--~~~~~~~i~~~l~~~~ 190 (807)
.-.+++|+|++|+|||||++.+..-... ..+.+++.- .+... ...+.+.+ .
T Consensus 27 ~Ge~~~i~G~nGsGKStLl~~l~G~~~~---~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~tv~~~i-------~ 96 (178)
T cd03247 27 QGEKIALLGRSGSGKSTLLQLLTGDLKP---QQGEITLDGVPVSDLEKALSSLISVLNQRPYLFDTTLRNNL-------G 96 (178)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccCCC---CCCEEEECCEEHHHHHHHHHhhEEEEccCCeeecccHHHhh-------c
Confidence 4468999999999999999999763211 122222210 11100 00111111 1
Q ss_pred CCCccHHHHHHHHHHHHhCCceEEEEeCCCCC-CccChHHHHHhhcCCCCCcEEEEEcCCHHHHH
Q 047321 191 FGLSEFESLMKQIQEYITGKKIFLVLDDVWDG-DYKKWDPFFSCLKNGHHESKILITTHDRSVAL 254 (807)
Q Consensus 191 ~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~-~~~~~~~l~~~l~~~~~gs~IliTTR~~~v~~ 254 (807)
......+...-.+.+.+-.++-++++|++... |....+.+...+.....+..||++|++.....
T Consensus 97 ~~LS~G~~qrv~laral~~~p~~lllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~ 161 (178)
T cd03247 97 RRFSGGERQRLALARILLQDAPIVLLDEPTVGLDPITERQLLSLIFEVLKDKTLIWITHHLTGIE 161 (178)
T ss_pred ccCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHH
Confidence 11222334445577778889999999999765 44445556566554444678999999988765
No 133
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=97.86 E-value=0.0007 Score=77.06 Aligned_cols=192 Identities=11% Similarity=0.084 Sum_probs=112.7
Q ss_pred CccccccchHHHHHHHHhCCCCCCCCCceEEEEEccCCChHHHHHHHHHcCcccccccceEEEEEeCCCCCHHHHHHHHH
Q 047321 104 GGVCGRVDEKNELLSKLLCGSSEQQKGLDVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSNTFEEISVAKAII 183 (807)
Q Consensus 104 ~~~vGR~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 183 (807)
.+++|-+..++.|...+..+. -...+.++|+.|+||||+|+.+++.......... ..+... ...+.|.
T Consensus 16 ~diiGqe~iv~~L~~~i~~~~-----i~hayLf~Gp~G~GKTt~Ar~lAk~L~c~~~~~~---~pC~~C----~~C~~i~ 83 (563)
T PRK06647 16 NSLEGQDFVVETLKHSIESNK-----IANAYIFSGPRGVGKTSSARAFARCLNCVNGPTP---MPCGEC----SSCKSID 83 (563)
T ss_pred HHccCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHhhccccCCCC---CCCccc----hHHHHHH
Confidence 468999999999999997432 4567889999999999999998763211100000 000000 0011111
Q ss_pred HHcCC-----CCCCCccHHHHHH---HHHHH-HhCCceEEEEeCCCCCCccChHHHHHhhcCCCCCcEEEEEcCC-HHHH
Q 047321 184 EGLGV-----SAFGLSEFESLMK---QIQEY-ITGKKIFLVLDDVWDGDYKKWDPFFSCLKNGHHESKILITTHD-RSVA 253 (807)
Q Consensus 184 ~~l~~-----~~~~~~~~~~~~~---~l~~~-l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~IliTTR~-~~v~ 253 (807)
..-.. ........+++.. .+... ..+++-++|+|++..-....++.+...+......+.+|++|.+ ..+.
T Consensus 84 ~~~~~dv~~idgas~~~vddIr~l~e~~~~~p~~~~~KVvIIDEa~~Ls~~a~naLLK~LEepp~~~vfI~~tte~~kL~ 163 (563)
T PRK06647 84 NDNSLDVIEIDGASNTSVQDVRQIKEEIMFPPASSRYRVYIIDEVHMLSNSAFNALLKTIEEPPPYIVFIFATTEVHKLP 163 (563)
T ss_pred cCCCCCeEEecCcccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhcCHHHHHHHHHhhccCCCCEEEEEecCChHHhH
Confidence 11000 0000112222222 11111 2466778999999766666677788777765566666666544 3333
Q ss_pred HHh-CCCceEeCCCCChhhHHHHHHHHHhccCCccCccchHHHHHHHHHHcCCCHHHHH
Q 047321 254 LQL-GSIDIIPVKELGEGECWLLFKQIAFLRRSFEDCEKLEPIGRKIASKCKGLPLAAK 311 (807)
Q Consensus 254 ~~~-~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~~~~I~~~c~glPLai~ 311 (807)
..+ .....+++.+++.++....+.+.+...+.. --.+.+..|++.++|.+-.+.
T Consensus 164 ~tI~SRc~~~~f~~l~~~el~~~L~~i~~~egi~----id~eAl~lLa~~s~GdlR~al 218 (563)
T PRK06647 164 ATIKSRCQHFNFRLLSLEKIYNMLKKVCLEDQIK----YEDEALKWIAYKSTGSVRDAY 218 (563)
T ss_pred HHHHHhceEEEecCCCHHHHHHHHHHHHHHcCCC----CCHHHHHHHHHHcCCCHHHHH
Confidence 222 224578999999999988888877543321 224567889999999885443
No 134
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=97.86 E-value=0.00045 Score=72.10 Aligned_cols=134 Identities=13% Similarity=0.077 Sum_probs=72.1
Q ss_pred eEEEEEccCCChHHHHHHHHHcCcccccccceEEEEEeCCCCCHHHHHHHHHHHcCCCCCCCccHHHHHHHHHHHHhCCc
Q 047321 132 DVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSNTFEEISVAKAIIEGLGVSAFGLSEFESLMKQIQEYITGKK 211 (807)
Q Consensus 132 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~ 211 (807)
.-+.++|++|+|||++|+.++............-++.++. .. ++..+.+. . .......+.+. ..
T Consensus 59 ~~vll~G~pGTGKT~lA~~ia~~l~~~g~~~~~~~v~v~~----~~----l~~~~~g~----~-~~~~~~~~~~a---~~ 122 (284)
T TIGR02880 59 LHMSFTGNPGTGKTTVALRMAQILHRLGYVRKGHLVSVTR----DD----LVGQYIGH----T-APKTKEILKRA---MG 122 (284)
T ss_pred ceEEEEcCCCCCHHHHHHHHHHHHHHcCCcccceEEEecH----HH----HhHhhccc----c-hHHHHHHHHHc---cC
Confidence 3688999999999999977765211111111112444332 11 12212111 1 11122222222 34
Q ss_pred eEEEEeCCCCC---------CccChHHHHHhhcCCCCCcEEEEEcCCHHHHHHhCC--------CceEeCCCCChhhHHH
Q 047321 212 IFLVLDDVWDG---------DYKKWDPFFSCLKNGHHESKILITTHDRSVALQLGS--------IDIIPVKELGEGECWL 274 (807)
Q Consensus 212 ~LlVlDdv~~~---------~~~~~~~l~~~l~~~~~gs~IliTTR~~~v~~~~~~--------~~~~~l~~L~~~~~~~ 274 (807)
-+|++|++..- ..+.++.+...+.....+.+||+++........... ...+++++++.+|-.+
T Consensus 123 gvL~iDEi~~L~~~~~~~~~~~~~~~~Ll~~le~~~~~~~vI~a~~~~~~~~~~~~np~L~sR~~~~i~fp~l~~edl~~ 202 (284)
T TIGR02880 123 GVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENQRDDLVVILAGYKDRMDSFFESNPGFSSRVAHHVDFPDYSEAELLV 202 (284)
T ss_pred cEEEEechhhhccCCCccchHHHHHHHHHHHHhcCCCCEEEEEeCCcHHHHHHHhhCHHHHhhCCcEEEeCCcCHHHHHH
Confidence 68999998521 112234455566555556677777654433222111 3468999999999999
Q ss_pred HHHHHHh
Q 047321 275 LFKQIAF 281 (807)
Q Consensus 275 Lf~~~a~ 281 (807)
++.+.+-
T Consensus 203 I~~~~l~ 209 (284)
T TIGR02880 203 IAGLMLK 209 (284)
T ss_pred HHHHHHH
Confidence 9988763
No 135
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=97.86 E-value=8.4e-05 Score=88.86 Aligned_cols=180 Identities=18% Similarity=0.137 Sum_probs=94.5
Q ss_pred ccccccchHHHHHHHHhCCCCCCCCCceEEEEEccCCChHHHHHHHHHcCcc---ccc-ccceEEE-EEeCCCCCHHHHH
Q 047321 105 GVCGRVDEKNELLSKLLCGSSEQQKGLDVISLVGLGGIGKTTLAQLAYNNDE---VKR-NFEKVIW-VCVSNTFEEISVA 179 (807)
Q Consensus 105 ~~vGR~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~---~~~-~f~~~~w-v~~~~~~~~~~~~ 179 (807)
.+|||+++++++++.|... ...-+.++|++|+||||+|+.++.... +.. -....+| +.++.-
T Consensus 188 ~~iGr~~ei~~~i~~l~r~------~~~n~lLvG~pGvGKTal~~~La~~i~~~~v~~~l~~~~i~~l~l~~l------- 254 (852)
T TIGR03345 188 PVLGRDDEIRQMIDILLRR------RQNNPILTGEAGVGKTAVVEGLALRIAAGDVPPALRNVRLLSLDLGLL------- 254 (852)
T ss_pred cccCCHHHHHHHHHHHhcC------CcCceeEECCCCCCHHHHHHHHHHHHhhCCCCccccCCeEEEeehhhh-------
Confidence 5899999999999999743 344567999999999999999887311 111 1122333 221110
Q ss_pred HHHHHHcCCCCCCCccHHHHHHH-HHHHH-hCCceEEEEeCCCCCC-----ccChH---HHHHhhcCCCCCcEEEEEcCC
Q 047321 180 KAIIEGLGVSAFGLSEFESLMKQ-IQEYI-TGKKIFLVLDDVWDGD-----YKKWD---PFFSCLKNGHHESKILITTHD 249 (807)
Q Consensus 180 ~~i~~~l~~~~~~~~~~~~~~~~-l~~~l-~~k~~LlVlDdv~~~~-----~~~~~---~l~~~l~~~~~gs~IliTTR~ 249 (807)
..+. ....+.+..... +.+.- .+.+.+|++|++..-. ...-+ .+...+..+ .-++|-+|..
T Consensus 255 ------~ag~-~~~ge~e~~lk~ii~e~~~~~~~~ILfIDEih~l~~~g~~~~~~d~~n~Lkp~l~~G--~l~~IgaTT~ 325 (852)
T TIGR03345 255 ------QAGA-SVKGEFENRLKSVIDEVKASPQPIILFIDEAHTLIGAGGQAGQGDAANLLKPALARG--ELRTIAATTW 325 (852)
T ss_pred ------hccc-ccchHHHHHHHHHHHHHHhcCCCeEEEEeChHHhccCCCccccccHHHHhhHHhhCC--CeEEEEecCH
Confidence 0000 011122222222 22222 2568999999985421 01111 233333322 2456666655
Q ss_pred HHHHHHh-------CCCceEeCCCCChhhHHHHHHHHHhccCCccCccchHHHHHHHHHHcCCC
Q 047321 250 RSVALQL-------GSIDIIPVKELGEGECWLLFKQIAFLRRSFEDCEKLEPIGRKIASKCKGL 306 (807)
Q Consensus 250 ~~v~~~~-------~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~~~~I~~~c~gl 306 (807)
.+....+ .-...+.+++++.++..+++....-.-.....-.-..+....+++.+.+.
T Consensus 326 ~e~~~~~~~d~AL~rRf~~i~v~eps~~~~~~iL~~~~~~~e~~~~v~i~d~al~~~~~ls~ry 389 (852)
T TIGR03345 326 AEYKKYFEKDPALTRRFQVVKVEEPDEETAIRMLRGLAPVLEKHHGVLILDEAVVAAVELSHRY 389 (852)
T ss_pred HHHhhhhhccHHHHHhCeEEEeCCCCHHHHHHHHHHHHHhhhhcCCCeeCHHHHHHHHHHcccc
Confidence 4332211 12358999999999999997544321111011111234456666666543
No 136
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=97.86 E-value=0.00012 Score=70.13 Aligned_cols=123 Identities=17% Similarity=0.251 Sum_probs=72.8
Q ss_pred CceEEEEEccCCChHHHHHHHHHcCc---ccccc---cc--eEEEEEeCCCCCHHHHHHHHHHHcCCCCC-------CCc
Q 047321 130 GLDVISLVGLGGIGKTTLAQLAYNND---EVKRN---FE--KVIWVCVSNTFEEISVAKAIIEGLGVSAF-------GLS 194 (807)
Q Consensus 130 ~~~vi~I~G~gGiGKTtLa~~v~~~~---~~~~~---f~--~~~wv~~~~~~~~~~~~~~i~~~l~~~~~-------~~~ 194 (807)
.-.+++|+|++|+|||||.+.+..+. .+... |. ...|+ .+ .+.++.++.... ...
T Consensus 20 ~G~~~~l~G~nG~GKSTLl~~il~~~G~v~~~~~~~~~~~~~~~~~--~q--------~~~l~~~~L~~~~~~~~~~~LS 89 (176)
T cd03238 20 LNVLVVVTGVSGSGKSTLVNEGLYASGKARLISFLPKFSRNKLIFI--DQ--------LQFLIDVGLGYLTLGQKLSTLS 89 (176)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhhcCCcEEECCcccccccccEEEE--hH--------HHHHHHcCCCccccCCCcCcCC
Confidence 45799999999999999999986321 11111 11 12232 11 345565554321 112
Q ss_pred cHHHHHHHHHHHHhCC--ceEEEEeCCCCC-CccChHHHHHhhcCC-CCCcEEEEEcCCHHHHHHhCCCceEeC
Q 047321 195 EFESLMKQIQEYITGK--KIFLVLDDVWDG-DYKKWDPFFSCLKNG-HHESKILITTHDRSVALQLGSIDIIPV 264 (807)
Q Consensus 195 ~~~~~~~~l~~~l~~k--~~LlVlDdv~~~-~~~~~~~l~~~l~~~-~~gs~IliTTR~~~v~~~~~~~~~~~l 264 (807)
......-.+.+.+..+ +-++++|++... |....+.+...+... ..|..||++|++.+.... ...++.+
T Consensus 90 gGq~qrl~laral~~~~~p~llLlDEPt~~LD~~~~~~l~~~l~~~~~~g~tvIivSH~~~~~~~--~d~i~~l 161 (176)
T cd03238 90 GGELQRVKLASELFSEPPGTLFILDEPSTGLHQQDINQLLEVIKGLIDLGNTVILIEHNLDVLSS--ADWIIDF 161 (176)
T ss_pred HHHHHHHHHHHHHhhCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHh--CCEEEEE
Confidence 2333444566677677 889999999664 444455555555432 246789999999887643 3344444
No 137
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.85 E-value=0.00017 Score=69.33 Aligned_cols=123 Identities=19% Similarity=0.156 Sum_probs=68.6
Q ss_pred CceEEEEEccCCChHHHHHHHHHcCcccccccceEEEEEeCC--CCCHHHHHHHHHHHcCCCC-CC-------CccHHHH
Q 047321 130 GLDVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSN--TFEEISVAKAIIEGLGVSA-FG-------LSEFESL 199 (807)
Q Consensus 130 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~--~~~~~~~~~~i~~~l~~~~-~~-------~~~~~~~ 199 (807)
.-.+++|+|++|+|||||++.++.-.. ...+.+++.-.. ........+.+.-...... .. ....+..
T Consensus 27 ~G~~~~l~G~nGsGKstLl~~i~G~~~---~~~G~i~~~g~~~~~~~~~~~~~~i~~~~~~~~~~~~t~~e~lLS~G~~~ 103 (171)
T cd03228 27 PGEKVAIVGPSGSGKSTLLKLLLRLYD---PTSGEILIDGVDLRDLDLESLRKNIAYVPQDPFLFSGTIRENILSGGQRQ 103 (171)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHcCCC---CCCCEEEECCEEhhhcCHHHHHhhEEEEcCCchhccchHHHHhhCHHHHH
Confidence 456999999999999999999986321 222333221100 0011111000000000000 00 1222333
Q ss_pred HHHHHHHHhCCceEEEEeCCCCC-CccChHHHHHhhcCCCCCcEEEEEcCCHHHHHH
Q 047321 200 MKQIQEYITGKKIFLVLDDVWDG-DYKKWDPFFSCLKNGHHESKILITTHDRSVALQ 255 (807)
Q Consensus 200 ~~~l~~~l~~k~~LlVlDdv~~~-~~~~~~~l~~~l~~~~~gs~IliTTR~~~v~~~ 255 (807)
.-.+.+.+..++-+++||++... |....+.+...+.....+..||++|++.+....
T Consensus 104 rl~la~al~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~ 160 (171)
T cd03228 104 RIAIARALLRDPPILILDEATSALDPETEALILEALRALAKGKTVIVIAHRLSTIRD 160 (171)
T ss_pred HHHHHHHHhcCCCEEEEECCCcCCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHHh
Confidence 34467777888999999999765 444555566666544445779999999877654
No 138
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=97.85 E-value=3e-06 Score=83.84 Aligned_cols=130 Identities=24% Similarity=0.358 Sum_probs=93.0
Q ss_pred CCCCCCeEEEEeeccCCCcchhhhhchhhHHHHHHhhcCCCCCCCCCCCcc-cceEeccCCcCceeeCcccCCCCCCCCC
Q 047321 584 NQQNLLRLRLRFGRVVDGEDEERRRKNEKDKQLLEALQPPLSHLPPLGKLP-LKKLELRDLESVKRVGNEFLGIEESSED 662 (807)
Q Consensus 584 ~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~l~p~~~~lp~l~~L~-L~~L~L~~~~~l~~i~~~~~~~~~l~~~ 662 (807)
-.+.|++|+|+.|.+..... +..-+| ++.|+++. +.+..++.
T Consensus 282 TWq~LtelDLS~N~I~~iDE-------------------------SvKL~Pkir~L~lS~-N~i~~v~n----------- 324 (490)
T KOG1259|consen 282 TWQELTELDLSGNLITQIDE-------------------------SVKLAPKLRRLILSQ-NRIRTVQN----------- 324 (490)
T ss_pred hHhhhhhccccccchhhhhh-------------------------hhhhccceeEEeccc-cceeeehh-----------
Confidence 34678899999887421110 133467 99999987 45666653
Q ss_pred CCCCCCCCCccccCcccccccccCCCcc---ccchhhhccccCCCCCCcccEEEEccCCCCCCCcccccCCCCccEEeec
Q 047321 663 DPSSSSSSPSVIAFPKLKSLEIDGMKEL---EEWNYRITRKENISIMPRLSSLQIMNCRKLKALPDYLLQTIALQKLSIY 739 (807)
Q Consensus 663 ~~~~~~~~~~~~~l~~L~~L~l~~~~~l---~~~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~lp~~l~~l~~L~~L~l~ 739 (807)
+..+++|..|++++. .+ ..|.. .+-+.+.|.+..+ .+.++. +++.+-+|..|+++
T Consensus 325 ----------La~L~~L~~LDLS~N-~Ls~~~Gwh~---------KLGNIKtL~La~N-~iE~LS-GL~KLYSLvnLDl~ 382 (490)
T KOG1259|consen 325 ----------LAELPQLQLLDLSGN-LLAECVGWHL---------KLGNIKTLKLAQN-KIETLS-GLRKLYSLVNLDLS 382 (490)
T ss_pred ----------hhhcccceEeecccc-hhHhhhhhHh---------hhcCEeeeehhhh-hHhhhh-hhHhhhhheecccc
Confidence 347899999999983 33 34443 6778999999988 777777 78889999999999
Q ss_pred cCcccccccccccccCCCCCCCCeeeeccCCCcccCC
Q 047321 740 SCDLLEELPILEDRRTTDIPRLSSLAIWYCPKLKVLP 776 (807)
Q Consensus 740 ~c~~l~~lP~~~~~~~~~l~~L~~L~i~~c~~l~~lP 776 (807)
++ +++.+.. ...++++|.|+++.+.++| +..+|
T Consensus 383 ~N-~Ie~lde--V~~IG~LPCLE~l~L~~NP-l~~~v 415 (490)
T KOG1259|consen 383 SN-QIEELDE--VNHIGNLPCLETLRLTGNP-LAGSV 415 (490)
T ss_pred cc-chhhHHH--hcccccccHHHHHhhcCCC-ccccc
Confidence 84 4555421 1578899999999999876 34344
No 139
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=97.85 E-value=7.4e-07 Score=88.12 Aligned_cols=144 Identities=17% Similarity=0.267 Sum_probs=90.3
Q ss_pred cccccccccccCcccccCCCCCCChhHHHHhhccCCCCCCeEEEEeeccCCCcchhhhhchhhHHHHHHhhcCCCCCCCC
Q 047321 550 RLESLKNLQLLRECGIEGLGNVSHLDEAERLQLYNQQNLLRLRLRFGRVVDGEDEERRRKNEKDKQLLEALQPPLSHLPP 629 (807)
Q Consensus 550 ~i~~L~~L~~L~~L~i~~l~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~l~p~~~~lp~ 629 (807)
....+.+=.+|+.|.++....+.. .+....+.+|+.|.+|+|+||.+.. +. .+++
T Consensus 226 I~~~iAkN~~L~~lnlsm~sG~t~--n~~~ll~~scs~L~~LNlsWc~l~~----------~~-Vtv~------------ 280 (419)
T KOG2120|consen 226 IVNTIAKNSNLVRLNLSMCSGFTE--NALQLLLSSCSRLDELNLSWCFLFT----------EK-VTVA------------ 280 (419)
T ss_pred HHHHHhccccceeeccccccccch--hHHHHHHHhhhhHhhcCchHhhccc----------hh-hhHH------------
Confidence 334455556677777777665543 4555678889999999999997310 00 0110
Q ss_pred CCCc-c-cceEeccCCcCceeeCcc-cCCCCCCCCCCCCCCCCCCccccCcccccccccCCCccccchhhhccccCCCCC
Q 047321 630 LGKL-P-LKKLELRDLESVKRVGNE-FLGIEESSEDDPSSSSSSPSVIAFPKLKSLEIDGMKELEEWNYRITRKENISIM 706 (807)
Q Consensus 630 l~~L-~-L~~L~L~~~~~l~~i~~~-~~~~~~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~l 706 (807)
+.+. + |+.|+|+||.. .++.. +..+ ...+|+|..|+|++|..++.-.. ..+..|
T Consensus 281 V~hise~l~~LNlsG~rr--nl~~sh~~tL----------------~~rcp~l~~LDLSD~v~l~~~~~-----~~~~kf 337 (419)
T KOG2120|consen 281 VAHISETLTQLNLSGYRR--NLQKSHLSTL----------------VRRCPNLVHLDLSDSVMLKNDCF-----QEFFKF 337 (419)
T ss_pred HhhhchhhhhhhhhhhHh--hhhhhHHHHH----------------HHhCCceeeeccccccccCchHH-----HHHHhc
Confidence 1122 2 88888888753 22211 0001 23688999999999887765222 345678
Q ss_pred CcccEEEEccCCCCCCCcc---cccCCCCccEEeeccCcc
Q 047321 707 PRLSSLQIMNCRKLKALPD---YLLQTIALQKLSIYSCDL 743 (807)
Q Consensus 707 ~~L~~L~l~~c~~L~~lp~---~l~~l~~L~~L~l~~c~~ 743 (807)
+.|++|.++.|..+ .|. .+...++|.+|++.+|-.
T Consensus 338 ~~L~~lSlsRCY~i--~p~~~~~l~s~psl~yLdv~g~vs 375 (419)
T KOG2120|consen 338 NYLQHLSLSRCYDI--IPETLLELNSKPSLVYLDVFGCVS 375 (419)
T ss_pred chheeeehhhhcCC--ChHHeeeeccCcceEEEEeccccC
Confidence 99999999999654 233 245567888888888753
No 140
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=97.85 E-value=0.00018 Score=66.85 Aligned_cols=108 Identities=25% Similarity=0.264 Sum_probs=68.1
Q ss_pred CceEEEEEccCCChHHHHHHHHHcCcccccccceEEEEEeCCCCCHHHHHHHHHHHcCCCCCCCccHHHHHHHHHHHHhC
Q 047321 130 GLDVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSNTFEEISVAKAIIEGLGVSAFGLSEFESLMKQIQEYITG 209 (807)
Q Consensus 130 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~ 209 (807)
.-.+++|+|++|+|||||++.+..-.. ...+.+|+.-. ..++.- .+....+...-.+.+.+..
T Consensus 25 ~Ge~~~i~G~nGsGKStLl~~l~G~~~---~~~G~i~~~~~-------------~~i~~~-~~lS~G~~~rv~laral~~ 87 (144)
T cd03221 25 PGDRIGLVGRNGAGKSTLLKLIAGELE---PDEGIVTWGST-------------VKIGYF-EQLSGGEKMRLALAKLLLE 87 (144)
T ss_pred CCCEEEEECCCCCCHHHHHHHHcCCCC---CCceEEEECCe-------------EEEEEE-ccCCHHHHHHHHHHHHHhc
Confidence 457999999999999999999987422 22333333210 000000 0023334444557777888
Q ss_pred CceEEEEeCCCCC-CccChHHHHHhhcCCCCCcEEEEEcCCHHHHHHh
Q 047321 210 KKIFLVLDDVWDG-DYKKWDPFFSCLKNGHHESKILITTHDRSVALQL 256 (807)
Q Consensus 210 k~~LlVlDdv~~~-~~~~~~~l~~~l~~~~~gs~IliTTR~~~v~~~~ 256 (807)
++-++++|++... |....+.+...+... +..||++|++.+.....
T Consensus 88 ~p~illlDEP~~~LD~~~~~~l~~~l~~~--~~til~~th~~~~~~~~ 133 (144)
T cd03221 88 NPNLLLLDEPTNHLDLESIEALEEALKEY--PGTVILVSHDRYFLDQV 133 (144)
T ss_pred CCCEEEEeCCccCCCHHHHHHHHHHHHHc--CCEEEEEECCHHHHHHh
Confidence 8999999999654 555556666666544 34699999988766543
No 141
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.83 E-value=0.00038 Score=79.86 Aligned_cols=197 Identities=13% Similarity=0.171 Sum_probs=112.3
Q ss_pred CccccccchHHHHHHHHhCCCCCCCCCceEEEEEccCCChHHHHHHHHHcCcccccccceEEEEEeCCCCCHHHHHHHHH
Q 047321 104 GGVCGRVDEKNELLSKLLCGSSEQQKGLDVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSNTFEEISVAKAII 183 (807)
Q Consensus 104 ~~~vGR~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 183 (807)
.++||.+..++.|...+..+. -...+.++|+.|+||||+|+.+++...-....+ ......-...+.|.
T Consensus 16 ~~iiGq~~v~~~L~~~i~~~~-----~~hayLf~Gp~G~GKtt~A~~lak~l~c~~~~~-------~~~c~~c~~c~~i~ 83 (576)
T PRK14965 16 SDLTGQEHVSRTLQNAIDTGR-----VAHAFLFTGARGVGKTSTARILAKALNCEQGLT-------AEPCNVCPPCVEIT 83 (576)
T ss_pred HHccCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHhhcCCCCCC-------CCCCCccHHHHHHh
Confidence 469999999999999887422 345678999999999999999876311110000 00000001111111
Q ss_pred HHcC--------CCCCCCccHHHHHHHHHHH-HhCCceEEEEeCCCCCCccChHHHHHhhcCCCCCcEEEEEc-CCHHHH
Q 047321 184 EGLG--------VSAFGLSEFESLMKQIQEY-ITGKKIFLVLDDVWDGDYKKWDPFFSCLKNGHHESKILITT-HDRSVA 253 (807)
Q Consensus 184 ~~l~--------~~~~~~~~~~~~~~~l~~~-l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~IliTT-R~~~v~ 253 (807)
..-. ....+..+..++...+... ..+++-++|+|++..-.......+...+......+.+|++| ....+.
T Consensus 84 ~g~~~d~~eid~~s~~~v~~ir~l~~~~~~~p~~~~~KVvIIdev~~Lt~~a~naLLk~LEepp~~~~fIl~t~~~~kl~ 163 (576)
T PRK14965 84 EGRSVDVFEIDGASNTGVDDIRELRENVKYLPSRSRYKIFIIDEVHMLSTNAFNALLKTLEEPPPHVKFIFATTEPHKVP 163 (576)
T ss_pred cCCCCCeeeeeccCccCHHHHHHHHHHHHhccccCCceEEEEEChhhCCHHHHHHHHHHHHcCCCCeEEEEEeCChhhhh
Confidence 1000 0001111222222222111 13456689999997666666777888887665566666554 444444
Q ss_pred HHh-CCCceEeCCCCChhhHHHHHHHHHhccCCccCccchHHHHHHHHHHcCCCH-HHHHHHHHH
Q 047321 254 LQL-GSIDIIPVKELGEGECWLLFKQIAFLRRSFEDCEKLEPIGRKIASKCKGLP-LAAKVIGNL 316 (807)
Q Consensus 254 ~~~-~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~~~~I~~~c~glP-Lai~~~~~~ 316 (807)
..+ .....+++++++.++....+...+-..+.. --.+.+..|++.++|.. .|+..+-..
T Consensus 164 ~tI~SRc~~~~f~~l~~~~i~~~L~~i~~~egi~----i~~~al~~la~~a~G~lr~al~~Ldql 224 (576)
T PRK14965 164 ITILSRCQRFDFRRIPLQKIVDRLRYIADQEGIS----ISDAALALVARKGDGSMRDSLSTLDQV 224 (576)
T ss_pred HHHHHhhhhhhcCCCCHHHHHHHHHHHHHHhCCC----CCHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 332 224578899999999988887766433221 12456788999999966 455554443
No 142
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=97.83 E-value=0.0004 Score=77.07 Aligned_cols=159 Identities=15% Similarity=0.143 Sum_probs=95.1
Q ss_pred ceEEEEEccCCChHHHHHHHHHcCccccccc-c-eEEEEEeCCCCCHHHHHHHHHHHcCCCCCCCccHHHHHHHHHHHHh
Q 047321 131 LDVISLVGLGGIGKTTLAQLAYNNDEVKRNF-E-KVIWVCVSNTFEEISVAKAIIEGLGVSAFGLSEFESLMKQIQEYIT 208 (807)
Q Consensus 131 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f-~-~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 208 (807)
..-+.|+|+.|+|||+||+.+++. +.... . .++|++. .+++..+...+... .. ..+.+...
T Consensus 130 ~n~l~lyG~~G~GKTHLl~ai~~~--l~~~~~~~~v~yi~~------~~f~~~~~~~~~~~-----~~----~~f~~~~~ 192 (440)
T PRK14088 130 YNPLFIYGGVGLGKTHLLQSIGNY--VVQNEPDLRVMYITS------EKFLNDLVDSMKEG-----KL----NEFREKYR 192 (440)
T ss_pred CCeEEEEcCCCCcHHHHHHHHHHH--HHHhCCCCeEEEEEH------HHHHHHHHHHHhcc-----cH----HHHHHHHH
Confidence 445999999999999999999983 33322 2 3556643 34455555544321 11 22333334
Q ss_pred CCceEEEEeCCCCC-CccCh-HHHHHhhcCC-CCCcEEEEEcC-CHHHH--------HHhCCCceEeCCCCChhhHHHHH
Q 047321 209 GKKIFLVLDDVWDG-DYKKW-DPFFSCLKNG-HHESKILITTH-DRSVA--------LQLGSIDIIPVKELGEGECWLLF 276 (807)
Q Consensus 209 ~k~~LlVlDdv~~~-~~~~~-~~l~~~l~~~-~~gs~IliTTR-~~~v~--------~~~~~~~~~~l~~L~~~~~~~Lf 276 (807)
.+.-+|++||+... +...+ +.+...+... ..|..||+||. .+.-. ..+...-.+.+++.+.++-..++
T Consensus 193 ~~~dvLlIDDi~~l~~~~~~q~elf~~~n~l~~~~k~iIitsd~~p~~l~~l~~rL~SR~~~gl~v~i~~pd~e~r~~IL 272 (440)
T PRK14088 193 KKVDVLLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPDEETRKKIA 272 (440)
T ss_pred hcCCEEEEechhhhcCcHHHHHHHHHHHHHHHHcCCeEEEECCCCHHHHHHHHHHHhhHHhcCceEeeCCCCHHHHHHHH
Confidence 45678999999643 11222 2343433321 23456888874 33221 12233447899999999999999
Q ss_pred HHHHhccCCccCccchHHHHHHHHHHcCCCHHHH
Q 047321 277 KQIAFLRRSFEDCEKLEPIGRKIASKCKGLPLAA 310 (807)
Q Consensus 277 ~~~a~~~~~~~~~~~~~~~~~~I~~~c~glPLai 310 (807)
.+.+...+. . --.+++..|++.+.|.--.+
T Consensus 273 ~~~~~~~~~-~---l~~ev~~~Ia~~~~~~~R~L 302 (440)
T PRK14088 273 RKMLEIEHG-E---LPEEVLNFVAENVDDNLRRL 302 (440)
T ss_pred HHHHHhcCC-C---CCHHHHHHHHhccccCHHHH
Confidence 988753222 1 12567888999888865444
No 143
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=97.82 E-value=0.00012 Score=69.67 Aligned_cols=120 Identities=18% Similarity=0.225 Sum_probs=72.7
Q ss_pred CceEEEEEccCCChHHHHHHHHHcCcccccccceEEEEEeCC--CCCHHHHHHHHHHHcCCCCCCCccHHHHHHHHHHHH
Q 047321 130 GLDVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSN--TFEEISVAKAIIEGLGVSAFGLSEFESLMKQIQEYI 207 (807)
Q Consensus 130 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~--~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l 207 (807)
.-.+++|+|++|+|||||++.++.-. ....+.+++.-.. ..+.....+ ..++. ..+....+...-.+.+.+
T Consensus 25 ~Ge~~~l~G~nGsGKSTLl~~i~G~~---~~~~G~v~~~g~~~~~~~~~~~~~---~~i~~-~~qLS~G~~qrl~laral 97 (163)
T cd03216 25 RGEVHALLGENGAGKSTLMKILSGLY---KPDSGEILVDGKEVSFASPRDARR---AGIAM-VYQLSVGERQMVEIARAL 97 (163)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC---CCCCeEEEECCEECCcCCHHHHHh---cCeEE-EEecCHHHHHHHHHHHHH
Confidence 45699999999999999999998632 2334444442111 111111111 11111 011334445555677888
Q ss_pred hCCceEEEEeCCCCC-CccChHHHHHhhcCC-CCCcEEEEEcCCHHHHHHh
Q 047321 208 TGKKIFLVLDDVWDG-DYKKWDPFFSCLKNG-HHESKILITTHDRSVALQL 256 (807)
Q Consensus 208 ~~k~~LlVlDdv~~~-~~~~~~~l~~~l~~~-~~gs~IliTTR~~~v~~~~ 256 (807)
-.++-++++|++... |....+.+...+... ..|..||++|++.......
T Consensus 98 ~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~ 148 (163)
T cd03216 98 ARNARLLILDEPTAALTPAEVERLFKVIRRLRAQGVAVIFISHRLDEVFEI 148 (163)
T ss_pred hcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHh
Confidence 888999999999764 555555566666443 3467899999998755443
No 144
>CHL00095 clpC Clp protease ATP binding subunit
Probab=97.82 E-value=0.00028 Score=84.84 Aligned_cols=154 Identities=21% Similarity=0.166 Sum_probs=85.9
Q ss_pred ccccccchHHHHHHHHhCCCCCCCCCceEEEEEccCCChHHHHHHHHHcCcc---ccccc-ceEEEEEeCCCCCHHHHHH
Q 047321 105 GVCGRVDEKNELLSKLLCGSSEQQKGLDVISLVGLGGIGKTTLAQLAYNNDE---VKRNF-EKVIWVCVSNTFEEISVAK 180 (807)
Q Consensus 105 ~~vGR~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~---~~~~f-~~~~wv~~~~~~~~~~~~~ 180 (807)
.++||+++++++++.|... ..+-+.++|++|+|||++|+.++.... +.... +..+|.- +...+
T Consensus 180 ~~igr~~ei~~~~~~L~r~------~~~n~lL~G~pGvGKTal~~~la~~i~~~~vp~~l~~~~i~~l-----~~~~l-- 246 (821)
T CHL00095 180 PVIGREKEIERVIQILGRR------TKNNPILIGEPGVGKTAIAEGLAQRIVNRDVPDILEDKLVITL-----DIGLL-- 246 (821)
T ss_pred CCCCcHHHHHHHHHHHccc------ccCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEe-----eHHHH--
Confidence 4899999999999999743 334557999999999999999876311 11111 2344421 11111
Q ss_pred HHHHHcCCCCCCCccHHHHHHHHHHH-HhCCceEEEEeCCCCC-------CccChHH-HHHhhcCCCCCcEEEEEcCCHH
Q 047321 181 AIIEGLGVSAFGLSEFESLMKQIQEY-ITGKKIFLVLDDVWDG-------DYKKWDP-FFSCLKNGHHESKILITTHDRS 251 (807)
Q Consensus 181 ~i~~~l~~~~~~~~~~~~~~~~l~~~-l~~k~~LlVlDdv~~~-------~~~~~~~-l~~~l~~~~~gs~IliTTR~~~ 251 (807)
+.+.. -..+.++....+.+. -..++.+|++|++..- ....... +...+..+ .-++|.+|....
T Consensus 247 -----~ag~~-~~ge~e~rl~~i~~~~~~~~~~ILfiDEih~l~~~g~~~g~~~~a~lLkp~l~rg--~l~~IgaTt~~e 318 (821)
T CHL00095 247 -----LAGTK-YRGEFEERLKRIFDEIQENNNIILVIDEVHTLIGAGAAEGAIDAANILKPALARG--ELQCIGATTLDE 318 (821)
T ss_pred -----hccCC-CccHHHHHHHHHHHHHHhcCCeEEEEecHHHHhcCCCCCCcccHHHHhHHHHhCC--CcEEEEeCCHHH
Confidence 11111 112233333333332 2356899999998421 0111222 33333322 235666665554
Q ss_pred HHHHh-------CCCceEeCCCCChhhHHHHHHHH
Q 047321 252 VALQL-------GSIDIIPVKELGEGECWLLFKQI 279 (807)
Q Consensus 252 v~~~~-------~~~~~~~l~~L~~~~~~~Lf~~~ 279 (807)
..... .....+.+...+.++...++...
T Consensus 319 y~~~ie~D~aL~rRf~~I~v~ep~~~e~~aILr~l 353 (821)
T CHL00095 319 YRKHIEKDPALERRFQPVYVGEPSVEETIEILFGL 353 (821)
T ss_pred HHHHHhcCHHHHhcceEEecCCCCHHHHHHHHHHH
Confidence 42221 12356788999999988888754
No 145
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=97.81 E-value=0.0013 Score=70.46 Aligned_cols=139 Identities=17% Similarity=0.174 Sum_probs=86.1
Q ss_pred CceEEEEEccCCChHHHHHHHHHcCcccccccceEEEEEeCCCCCHHHHHHHHHHHcCCCCCCCccHHHHHHHHHHHHhC
Q 047321 130 GLDVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSNTFEEISVAKAIIEGLGVSAFGLSEFESLMKQIQEYITG 209 (807)
Q Consensus 130 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~ 209 (807)
....+.|+|..|.|||.|++.+.+ ....+.+....+.++ ....+..++..+.. .-...+++..
T Consensus 112 ~~nplfi~G~~GlGKTHLl~Aign--~~~~~~~~a~v~y~~----se~f~~~~v~a~~~---------~~~~~Fk~~y-- 174 (408)
T COG0593 112 AYNPLFIYGGVGLGKTHLLQAIGN--EALANGPNARVVYLT----SEDFTNDFVKALRD---------NEMEKFKEKY-- 174 (408)
T ss_pred cCCcEEEECCCCCCHHHHHHHHHH--HHHhhCCCceEEecc----HHHHHHHHHHHHHh---------hhHHHHHHhh--
Confidence 578999999999999999999998 444444422223222 22333333333221 1233444444
Q ss_pred CceEEEEeCCCCC-CccChHH-HHHhhcCC-CCCcEEEEEcCC---------HHHHHHhCCCceEeCCCCChhhHHHHHH
Q 047321 210 KKIFLVLDDVWDG-DYKKWDP-FFSCLKNG-HHESKILITTHD---------RSVALQLGSIDIIPVKELGEGECWLLFK 277 (807)
Q Consensus 210 k~~LlVlDdv~~~-~~~~~~~-l~~~l~~~-~~gs~IliTTR~---------~~v~~~~~~~~~~~l~~L~~~~~~~Lf~ 277 (807)
.--++++||++.- ..+.|+. +...+..- ..|..||+|++. +++...+...-++++.+.+.+....++.
T Consensus 175 ~~dlllIDDiq~l~gk~~~qeefFh~FN~l~~~~kqIvltsdr~P~~l~~~~~rL~SR~~~Gl~~~I~~Pd~e~r~aiL~ 254 (408)
T COG0593 175 SLDLLLIDDIQFLAGKERTQEEFFHTFNALLENGKQIVLTSDRPPKELNGLEDRLRSRLEWGLVVEIEPPDDETRLAILR 254 (408)
T ss_pred ccCeeeechHhHhcCChhHHHHHHHHHHHHHhcCCEEEEEcCCCchhhccccHHHHHHHhceeEEeeCCCCHHHHHHHHH
Confidence 4458889999652 1223333 44444432 334489999864 3344455556689999999999999999
Q ss_pred HHHhccCC
Q 047321 278 QIAFLRRS 285 (807)
Q Consensus 278 ~~a~~~~~ 285 (807)
+++...+-
T Consensus 255 kka~~~~~ 262 (408)
T COG0593 255 KKAEDRGI 262 (408)
T ss_pred HHHHhcCC
Confidence 97754443
No 146
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=97.81 E-value=0.00013 Score=73.30 Aligned_cols=129 Identities=20% Similarity=0.233 Sum_probs=76.5
Q ss_pred CceEEEEEccCCChHHHHHHHHHcCccccc----------------cc-ceEEEEEeC---------------------C
Q 047321 130 GLDVISLVGLGGIGKTTLAQLAYNNDEVKR----------------NF-EKVIWVCVS---------------------N 171 (807)
Q Consensus 130 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~----------------~f-~~~~wv~~~---------------------~ 171 (807)
.-.+++|+|++|+|||||.+.++.-..... .+ ....++.-+ .
T Consensus 27 ~G~i~~iiGpNG~GKSTLLk~l~g~l~p~~G~V~l~g~~i~~~~~kelAk~ia~vpQ~~~~~~~~tV~d~V~~GR~p~~~ 106 (258)
T COG1120 27 KGEITGILGPNGSGKSTLLKCLAGLLKPKSGEVLLDGKDIASLSPKELAKKLAYVPQSPSAPFGLTVYELVLLGRYPHLG 106 (258)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCCchhhcCHHHHhhhEEEeccCCCCCCCcEEeehHhhcCCcccc
Confidence 467999999999999999999865211000 00 011222100 0
Q ss_pred -----CCCHHHHHHHHHHHcCCCC-----C-CCccHHHHHHHHHHHHhCCceEEEEeCCCCC-CccChHHHHHhhcCC--
Q 047321 172 -----TFEEISVAKAIIEGLGVSA-----F-GLSEFESLMKQIQEYITGKKIFLVLDDVWDG-DYKKWDPFFSCLKNG-- 237 (807)
Q Consensus 172 -----~~~~~~~~~~i~~~l~~~~-----~-~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~-~~~~~~~l~~~l~~~-- 237 (807)
.....+...+.++.++... . .....+.....+++.+..+.-+|+||+..+. |...-..+...+...
T Consensus 107 ~~~~~~~~D~~~v~~aL~~~~~~~la~r~~~~LSGGerQrv~iArALaQ~~~iLLLDEPTs~LDi~~Q~evl~ll~~l~~ 186 (258)
T COG1120 107 LFGRPSKEDEEIVEEALELLGLEHLADRPVDELSGGERQRVLIARALAQETPILLLDEPTSHLDIAHQIEVLELLRDLNR 186 (258)
T ss_pred cccCCCHhHHHHHHHHHHHhCcHHHhcCcccccChhHHHHHHHHHHHhcCCCEEEeCCCccccCHHHHHHHHHHHHHHHH
Confidence 0112224444555555432 1 2233444556678889999999999998664 333333344444432
Q ss_pred CCCcEEEEEcCCHHHHHHhCC
Q 047321 238 HHESKILITTHDRSVALQLGS 258 (807)
Q Consensus 238 ~~gs~IliTTR~~~v~~~~~~ 258 (807)
..|..||+++++.+.|...+.
T Consensus 187 ~~~~tvv~vlHDlN~A~ryad 207 (258)
T COG1120 187 EKGLTVVMVLHDLNLAARYAD 207 (258)
T ss_pred hcCCEEEEEecCHHHHHHhCC
Confidence 357789999999998877654
No 147
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=97.81 E-value=0.0012 Score=74.49 Aligned_cols=158 Identities=14% Similarity=0.135 Sum_probs=94.3
Q ss_pred ceEEEEEccCCChHHHHHHHHHcCccccccc--ceEEEEEeCCCCCHHHHHHHHHHHcCCCCCCCccHHHHHHHHHHHHh
Q 047321 131 LDVISLVGLGGIGKTTLAQLAYNNDEVKRNF--EKVIWVCVSNTFEEISVAKAIIEGLGVSAFGLSEFESLMKQIQEYIT 208 (807)
Q Consensus 131 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f--~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 208 (807)
...+.|+|..|+|||.|++.+++. ....+ ..+++++ ..++..++...+... . ...+.+.+.
T Consensus 314 ~NpL~LyG~sGsGKTHLL~AIa~~--a~~~~~g~~V~Yit------aeef~~el~~al~~~-----~----~~~f~~~y~ 376 (617)
T PRK14086 314 YNPLFIYGESGLGKTHLLHAIGHY--ARRLYPGTRVRYVS------SEEFTNEFINSIRDG-----K----GDSFRRRYR 376 (617)
T ss_pred CCcEEEECCCCCCHHHHHHHHHHH--HHHhCCCCeEEEee------HHHHHHHHHHHHHhc-----c----HHHHHHHhh
Confidence 345899999999999999999984 32222 2344554 233344443333211 1 122333333
Q ss_pred CCceEEEEeCCCCCC-ccChHH-HHHhhcCC-CCCcEEEEEcCCH---------HHHHHhCCCceEeCCCCChhhHHHHH
Q 047321 209 GKKIFLVLDDVWDGD-YKKWDP-FFSCLKNG-HHESKILITTHDR---------SVALQLGSIDIIPVKELGEGECWLLF 276 (807)
Q Consensus 209 ~k~~LlVlDdv~~~~-~~~~~~-l~~~l~~~-~~gs~IliTTR~~---------~v~~~~~~~~~~~l~~L~~~~~~~Lf 276 (807)
. .-+|||||+.... ...|+. +...+... ..|..|||||+.. ++...+...-++++...+.+.-..++
T Consensus 377 ~-~DLLlIDDIq~l~gke~tqeeLF~l~N~l~e~gk~IIITSd~~P~eL~~l~~rL~SRf~~GLvv~I~~PD~EtR~aIL 455 (617)
T PRK14086 377 E-MDILLVDDIQFLEDKESTQEEFFHTFNTLHNANKQIVLSSDRPPKQLVTLEDRLRNRFEWGLITDVQPPELETRIAIL 455 (617)
T ss_pred c-CCEEEEehhccccCCHHHHHHHHHHHHHHHhcCCCEEEecCCChHhhhhccHHHHhhhhcCceEEcCCCCHHHHHHHH
Confidence 2 4588899996542 233333 44444322 3355688888752 23333444568999999999999999
Q ss_pred HHHHhccCCccCccchHHHHHHHHHHcCCCHHHH
Q 047321 277 KQIAFLRRSFEDCEKLEPIGRKIASKCKGLPLAA 310 (807)
Q Consensus 277 ~~~a~~~~~~~~~~~~~~~~~~I~~~c~glPLai 310 (807)
.+++...+- .--.+++..|++.+.+..-.+
T Consensus 456 ~kka~~r~l----~l~~eVi~yLa~r~~rnvR~L 485 (617)
T PRK14086 456 RKKAVQEQL----NAPPEVLEFIASRISRNIREL 485 (617)
T ss_pred HHHHHhcCC----CCCHHHHHHHHHhccCCHHHH
Confidence 998754332 122567788888887765444
No 148
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=97.81 E-value=0.00021 Score=78.09 Aligned_cols=177 Identities=17% Similarity=0.136 Sum_probs=96.6
Q ss_pred CccccccchHHHHHHHHhCCCCC-------CCCCceEEEEEccCCChHHHHHHHHHcCcccccccceEEEEEeCCCCCHH
Q 047321 104 GGVCGRVDEKNELLSKLLCGSSE-------QQKGLDVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSNTFEEI 176 (807)
Q Consensus 104 ~~~vGR~~~~~~l~~~L~~~~~~-------~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~ 176 (807)
.++.|+++.++++.+.+..+-.. +-...+-|.++|++|+|||++|+.+++. .... |+.++. .
T Consensus 131 ~di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lAkaia~~--~~~~-----~i~v~~----~ 199 (389)
T PRK03992 131 EDIGGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHE--TNAT-----FIRVVG----S 199 (389)
T ss_pred HHhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHHHHHHHH--hCCC-----EEEeeh----H
Confidence 35789999999998876432110 0134567899999999999999999973 2222 222211 1
Q ss_pred HHHHHHHHHcCCCCCCCccHHHHHHHHHHH-HhCCceEEEEeCCCCC-----------CccChHHHHHhhcC--C---CC
Q 047321 177 SVAKAIIEGLGVSAFGLSEFESLMKQIQEY-ITGKKIFLVLDDVWDG-----------DYKKWDPFFSCLKN--G---HH 239 (807)
Q Consensus 177 ~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~-l~~k~~LlVlDdv~~~-----------~~~~~~~l~~~l~~--~---~~ 239 (807)
.+. .... + +.......+.+. -...+.+|++||+..- +......+...+.. + ..
T Consensus 200 ~l~----~~~~----g--~~~~~i~~~f~~a~~~~p~IlfiDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~~~ 269 (389)
T PRK03992 200 ELV----QKFI----G--EGARLVRELFELAREKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAEMDGFDPRG 269 (389)
T ss_pred HHh----Hhhc----c--chHHHHHHHHHHHHhcCCeEEEEechhhhhcccccCCCCccHHHHHHHHHHHHhccccCCCC
Confidence 111 1110 0 111222222222 2356789999998531 11112223333321 1 23
Q ss_pred CcEEEEEcCCHHHHH-Hh-C---CCceEeCCCCChhhHHHHHHHHHhccCCccCccchHHHHHHHHHHcCCC
Q 047321 240 ESKILITTHDRSVAL-QL-G---SIDIIPVKELGEGECWLLFKQIAFLRRSFEDCEKLEPIGRKIASKCKGL 306 (807)
Q Consensus 240 gs~IliTTR~~~v~~-~~-~---~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~~~~I~~~c~gl 306 (807)
+..||.||...+... .+ . -...+.++..+.++-.++|+.+.....- ..... ...+++.+.|.
T Consensus 270 ~v~VI~aTn~~~~ld~allRpgRfd~~I~v~~P~~~~R~~Il~~~~~~~~~-~~~~~----~~~la~~t~g~ 336 (389)
T PRK03992 270 NVKIIAATNRIDILDPAILRPGRFDRIIEVPLPDEEGRLEILKIHTRKMNL-ADDVD----LEELAELTEGA 336 (389)
T ss_pred CEEEEEecCChhhCCHHHcCCccCceEEEECCCCHHHHHHHHHHHhccCCC-CCcCC----HHHHHHHcCCC
Confidence 456777776543221 11 1 1347899999999999999887643221 11122 35566677664
No 149
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=97.80 E-value=0.00011 Score=73.37 Aligned_cols=127 Identities=20% Similarity=0.306 Sum_probs=75.3
Q ss_pred CceEEEEEccCCChHHHHHHHHHcCcc-----cc------ccc---ceEEEEEe----CCCC--CH--------------
Q 047321 130 GLDVISLVGLGGIGKTTLAQLAYNNDE-----VK------RNF---EKVIWVCV----SNTF--EE-------------- 175 (807)
Q Consensus 130 ~~~vi~I~G~gGiGKTtLa~~v~~~~~-----~~------~~f---~~~~wv~~----~~~~--~~-------------- 175 (807)
.-.+++|+|++|+|||||.+.+..-.. +. ... ..+.||.- ...| ++
T Consensus 29 ~G~~~~iiGPNGaGKSTLlK~iLGll~p~~G~i~~~g~~~~~~~~~~~IgYVPQ~~~~d~~fP~tV~d~V~~g~~~~~g~ 108 (254)
T COG1121 29 KGEITALIGPNGAGKSTLLKAILGLLKPSSGEIKIFGKPVRKRRKRLRIGYVPQKSSVDRSFPITVKDVVLLGRYGKKGW 108 (254)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCcCCcceEEEccccccccccCCeEEEcCcccccCCCCCcCHHHHHHccCcccccc
Confidence 347999999999999999999865111 10 001 13445431 1111 11
Q ss_pred --------HHHHHHHHHHcCCCC-----CCC-ccHHHHHHHHHHHHhCCceEEEEeCCCCC-CccChHHHHHhhcCC-CC
Q 047321 176 --------ISVAKAIIEGLGVSA-----FGL-SEFESLMKQIQEYITGKKIFLVLDDVWDG-DYKKWDPFFSCLKNG-HH 239 (807)
Q Consensus 176 --------~~~~~~i~~~l~~~~-----~~~-~~~~~~~~~l~~~l~~k~~LlVlDdv~~~-~~~~~~~l~~~l~~~-~~ 239 (807)
.+...+.++.++... .+. ...+.....+++.|..++-|++||+.... |...-..+...+..- ..
T Consensus 109 ~~~~~~~d~~~v~~aL~~Vgm~~~~~r~i~~LSGGQ~QRV~lARAL~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~~e 188 (254)
T COG1121 109 FRRLNKKDKEKVDEALERVGMEDLRDRQIGELSGGQKQRVLLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQE 188 (254)
T ss_pred cccccHHHHHHHHHHHHHcCchhhhCCcccccCcHHHHHHHHHHHhccCCCEEEecCCcccCCHHHHHHHHHHHHHHHHC
Confidence 234445555555432 222 23333344578889999999999998664 433334454444432 23
Q ss_pred CcEEEEEcCCHHHHHHh
Q 047321 240 ESKILITTHDRSVALQL 256 (807)
Q Consensus 240 gs~IliTTR~~~v~~~~ 256 (807)
|..||++|+|-......
T Consensus 189 g~tIl~vtHDL~~v~~~ 205 (254)
T COG1121 189 GKTVLMVTHDLGLVMAY 205 (254)
T ss_pred CCEEEEEeCCcHHhHhh
Confidence 88999999997765443
No 150
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=97.79 E-value=0.0018 Score=63.83 Aligned_cols=198 Identities=20% Similarity=0.258 Sum_probs=117.9
Q ss_pred chHHHHHHHHhCCCCCCCCCceEEEEEccCCChHHHHHHHHHcCcccccccceEEEEEe-CCCCCHHHHHHHHHHHcCCC
Q 047321 111 DEKNELLSKLLCGSSEQQKGLDVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCV-SNTFEEISVAKAIIEGLGVS 189 (807)
Q Consensus 111 ~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~-~~~~~~~~~~~~i~~~l~~~ 189 (807)
.+.++.+..+...- ..+..++.++|.-|+|||.+++..... ..+ +.++-|.+ ........+...|+..+...
T Consensus 34 a~h~e~l~~l~~~i---~d~qg~~~vtGevGsGKTv~~Ral~~s--~~~--d~~~~v~i~~~~~s~~~~~~ai~~~l~~~ 106 (269)
T COG3267 34 ADHNEALLMLHAAI---ADGQGILAVTGEVGSGKTVLRRALLAS--LNE--DQVAVVVIDKPTLSDATLLEAIVADLESQ 106 (269)
T ss_pred hhhhHHHHHHHHHH---hcCCceEEEEecCCCchhHHHHHHHHh--cCC--CceEEEEecCcchhHHHHHHHHHHHhccC
Confidence 34444544444333 346679999999999999999944321 111 11121333 34556777888888888763
Q ss_pred CCCC--ccHHHHHHHHHHHH-hCCc-eEEEEeCCCCCCccChHHHHHhhcCCCCCc---EEEEEcCCH-------HHHHH
Q 047321 190 AFGL--SEFESLMKQIQEYI-TGKK-IFLVLDDVWDGDYKKWDPFFSCLKNGHHES---KILITTHDR-------SVALQ 255 (807)
Q Consensus 190 ~~~~--~~~~~~~~~l~~~l-~~k~-~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs---~IliTTR~~-------~v~~~ 255 (807)
..-. ...++..+.+.+.. ++++ ..++.||.........+.++-.......++ +|+..-..+ .+...
T Consensus 107 p~~~~~~~~e~~~~~L~al~~~g~r~v~l~vdEah~L~~~~le~Lrll~nl~~~~~~~l~ivL~Gqp~L~~~lr~~~l~e 186 (269)
T COG3267 107 PKVNVNAVLEQIDRELAALVKKGKRPVVLMVDEAHDLNDSALEALRLLTNLEEDSSKLLSIVLIGQPKLRPRLRLPVLRE 186 (269)
T ss_pred ccchhHHHHHHHHHHHHHHHHhCCCCeEEeehhHhhhChhHHHHHHHHHhhcccccCceeeeecCCcccchhhchHHHHh
Confidence 2111 12333444444444 5677 899999997665556666555443222222 345443321 11111
Q ss_pred hCC-Cce-EeCCCCChhhHHHHHHHHHhccCCccCccchHHHHHHHHHHcCCCHHHHHHHHHH
Q 047321 256 LGS-IDI-IPVKELGEGECWLLFKQIAFLRRSFEDCEKLEPIGRKIASKCKGLPLAAKVIGNL 316 (807)
Q Consensus 256 ~~~-~~~-~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~~~~I~~~c~glPLai~~~~~~ 316 (807)
... ..+ |++.|++.++...++..+..+... ..+---.+....|.....|.|.+|..++..
T Consensus 187 ~~~R~~ir~~l~P~~~~~t~~yl~~~Le~a~~-~~~l~~~~a~~~i~~~sqg~P~lin~~~~~ 248 (269)
T COG3267 187 LEQRIDIRIELPPLTEAETGLYLRHRLEGAGL-PEPLFSDDALLLIHEASQGIPRLINNLATL 248 (269)
T ss_pred hhheEEEEEecCCcChHHHHHHHHHHHhccCC-CcccCChhHHHHHHHHhccchHHHHHHHHH
Confidence 111 234 899999999999988887655432 222233556788999999999999887654
No 151
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=97.78 E-value=0.0012 Score=75.50 Aligned_cols=192 Identities=16% Similarity=0.135 Sum_probs=109.6
Q ss_pred CccccccchHHHHHHHHhCCCCCCCCCceEEEEEccCCChHHHHHHHHHcCcccccccceEEEEEeCCCCCHHHHHHHHH
Q 047321 104 GGVCGRVDEKNELLSKLLCGSSEQQKGLDVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSNTFEEISVAKAII 183 (807)
Q Consensus 104 ~~~vGR~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 183 (807)
.+++|.+..++.+...+.... -...+.++|+.|+||||+|+.+.........-+ ......-...+.|.
T Consensus 16 ~~viGq~~v~~~L~~~i~~~~-----~~hayLf~Gp~GtGKTt~Ak~lAkal~c~~~~~-------~~pC~~C~~C~~i~ 83 (559)
T PRK05563 16 EDVVGQEHITKTLKNAIKQGK-----ISHAYLFSGPRGTGKTSAAKIFAKAVNCLNPPD-------GEPCNECEICKAIT 83 (559)
T ss_pred HhccCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCC-------CCCCCccHHHHHHh
Confidence 479999999999999987532 356678899999999999999865211100000 00011111112221
Q ss_pred HHcCCC--------CCCCccHHHHHHHHHHH-HhCCceEEEEeCCCCCCccChHHHHHhhcCCCCCcEEEEEc-CCHHHH
Q 047321 184 EGLGVS--------AFGLSEFESLMKQIQEY-ITGKKIFLVLDDVWDGDYKKWDPFFSCLKNGHHESKILITT-HDRSVA 253 (807)
Q Consensus 184 ~~l~~~--------~~~~~~~~~~~~~l~~~-l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~IliTT-R~~~v~ 253 (807)
...... ..+.++..++...+... ..+++-++|+|++..-....+..+...+........+|++| ....+.
T Consensus 84 ~g~~~dv~eidaas~~~vd~ir~i~~~v~~~p~~~~~kViIIDE~~~Lt~~a~naLLKtLEepp~~~ifIlatt~~~ki~ 163 (559)
T PRK05563 84 NGSLMDVIEIDAASNNGVDEIRDIRDKVKYAPSEAKYKVYIIDEVHMLSTGAFNALLKTLEEPPAHVIFILATTEPHKIP 163 (559)
T ss_pred cCCCCCeEEeeccccCCHHHHHHHHHHHhhCcccCCeEEEEEECcccCCHHHHHHHHHHhcCCCCCeEEEEEeCChhhCc
Confidence 111000 00111122222222111 24567789999997655566777777776654455555444 433332
Q ss_pred HHh-CCCceEeCCCCChhhHHHHHHHHHhccCCccCccchHHHHHHHHHHcCCCHHHHH
Q 047321 254 LQL-GSIDIIPVKELGEGECWLLFKQIAFLRRSFEDCEKLEPIGRKIASKCKGLPLAAK 311 (807)
Q Consensus 254 ~~~-~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~~~~I~~~c~glPLai~ 311 (807)
..+ .....+++.+++.++....+...+-..+.. --.+.+..|++.++|.+..+.
T Consensus 164 ~tI~SRc~~~~f~~~~~~ei~~~L~~i~~~egi~----i~~~al~~ia~~s~G~~R~al 218 (559)
T PRK05563 164 ATILSRCQRFDFKRISVEDIVERLKYILDKEGIE----YEDEALRLIARAAEGGMRDAL 218 (559)
T ss_pred HHHHhHheEEecCCCCHHHHHHHHHHHHHHcCCC----CCHHHHHHHHHHcCCCHHHHH
Confidence 222 224578999999999988888877433321 123567888999999876443
No 152
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=97.78 E-value=0.0007 Score=75.91 Aligned_cols=159 Identities=15% Similarity=0.128 Sum_probs=94.2
Q ss_pred CceEEEEEccCCChHHHHHHHHHcCccccccc--ceEEEEEeCCCCCHHHHHHHHHHHcCCCCCCCccHHHHHHHHHHHH
Q 047321 130 GLDVISLVGLGGIGKTTLAQLAYNNDEVKRNF--EKVIWVCVSNTFEEISVAKAIIEGLGVSAFGLSEFESLMKQIQEYI 207 (807)
Q Consensus 130 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f--~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l 207 (807)
....+.|+|+.|+|||+|++.+++. ....+ ..+++++. ..+...+...+... .. ..+.+.+
T Consensus 147 ~~~~l~l~G~~G~GKThL~~ai~~~--~~~~~~~~~v~yi~~------~~~~~~~~~~~~~~-----~~----~~~~~~~ 209 (450)
T PRK00149 147 AYNPLFIYGGVGLGKTHLLHAIGNY--ILEKNPNAKVVYVTS------EKFTNDFVNALRNN-----TM----EEFKEKY 209 (450)
T ss_pred cCCeEEEECCCCCCHHHHHHHHHHH--HHHhCCCCeEEEEEH------HHHHHHHHHHHHcC-----cH----HHHHHHH
Confidence 3456899999999999999999984 43333 23445543 23333343333211 11 2233333
Q ss_pred hCCceEEEEeCCCCCCcc-Ch-HHHHHhhcCC-CCCcEEEEEcCCHH---------HHHHhCCCceEeCCCCChhhHHHH
Q 047321 208 TGKKIFLVLDDVWDGDYK-KW-DPFFSCLKNG-HHESKILITTHDRS---------VALQLGSIDIIPVKELGEGECWLL 275 (807)
Q Consensus 208 ~~k~~LlVlDdv~~~~~~-~~-~~l~~~l~~~-~~gs~IliTTR~~~---------v~~~~~~~~~~~l~~L~~~~~~~L 275 (807)
+ +.-+||+||+...... .+ +.+...+... ..|..||+||.... +...+.....+++++.+.++-..+
T Consensus 210 ~-~~dlLiiDDi~~l~~~~~~~~~l~~~~n~l~~~~~~iiits~~~p~~l~~l~~~l~SRl~~gl~v~i~~pd~~~r~~i 288 (450)
T PRK00149 210 R-SVDVLLIDDIQFLAGKERTQEEFFHTFNALHEAGKQIVLTSDRPPKELPGLEERLRSRFEWGLTVDIEPPDLETRIAI 288 (450)
T ss_pred h-cCCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCcEEEECCCCHHHHHHHHHHHHhHhcCCeeEEecCCCHHHHHHH
Confidence 3 3558999999643211 12 2344433221 23445777776431 122333345799999999999999
Q ss_pred HHHHHhccCCccCccchHHHHHHHHHHcCCCHHHH
Q 047321 276 FKQIAFLRRSFEDCEKLEPIGRKIASKCKGLPLAA 310 (807)
Q Consensus 276 f~~~a~~~~~~~~~~~~~~~~~~I~~~c~glPLai 310 (807)
+.+.+-..+. .--.++...|++.+.|..-.+
T Consensus 289 l~~~~~~~~~----~l~~e~l~~ia~~~~~~~R~l 319 (450)
T PRK00149 289 LKKKAEEEGI----DLPDEVLEFIAKNITSNVREL 319 (450)
T ss_pred HHHHHHHcCC----CCCHHHHHHHHcCcCCCHHHH
Confidence 9998854221 122467889999999887644
No 153
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=97.77 E-value=0.00034 Score=72.34 Aligned_cols=161 Identities=14% Similarity=0.089 Sum_probs=79.7
Q ss_pred ccccccchHHHHHHHHhCC---------CCCCCCCceEEEEEccCCChHHHHHHHHHcCcccccccceEEEEEeCCCCCH
Q 047321 105 GVCGRVDEKNELLSKLLCG---------SSEQQKGLDVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSNTFEE 175 (807)
Q Consensus 105 ~~vGR~~~~~~l~~~L~~~---------~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~ 175 (807)
.++|.++.+++|.+..... .....+....+.++|++|+||||+|+.+++...-........++.++..
T Consensus 7 ~~~Gl~~vk~~i~~~~~~~~~~~~~~~~g~~~~~~~~~vll~GppGtGKTtlA~~ia~~l~~~~~~~~~~~v~~~~~--- 83 (261)
T TIGR02881 7 RMVGLDEVKALIKEIYAWIQINEKRKEEGLKTSKQVLHMIFKGNPGTGKTTVARILGKLFKEMNVLSKGHLIEVERA--- 83 (261)
T ss_pred HhcChHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCcceEEEEcCCCCCHHHHHHHHHHHHHhcCcccCCceEEecHH---
Confidence 4788887776665443211 0000234567889999999999999999762110000011112222111
Q ss_pred HHHHHHHHHHcCCCCCCCccHHHHHHHHHHHHhCCceEEEEeCCCCCC--------ccChHHHHHhhcCCCCCcEEEEEc
Q 047321 176 ISVAKAIIEGLGVSAFGLSEFESLMKQIQEYITGKKIFLVLDDVWDGD--------YKKWDPFFSCLKNGHHESKILITT 247 (807)
Q Consensus 176 ~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~--------~~~~~~l~~~l~~~~~gs~IliTT 247 (807)
.+. ... .+. ........+.+. ..-+|++|++..-. .+..+.+...+........+|+++
T Consensus 84 -~l~----~~~----~g~-~~~~~~~~~~~a---~~~VL~IDE~~~L~~~~~~~~~~~~i~~Ll~~~e~~~~~~~vila~ 150 (261)
T TIGR02881 84 -DLV----GEY----IGH-TAQKTREVIKKA---LGGVLFIDEAYSLARGGEKDFGKEAIDTLVKGMEDNRNEFVLILAG 150 (261)
T ss_pred -Hhh----hhh----ccc-hHHHHHHHHHhc---cCCEEEEechhhhccCCccchHHHHHHHHHHHHhccCCCEEEEecC
Confidence 111 100 000 011112222221 23589999995421 112233444444433333455555
Q ss_pred CCHHHHH------HhCC--CceEeCCCCChhhHHHHHHHHHh
Q 047321 248 HDRSVAL------QLGS--IDIIPVKELGEGECWLLFKQIAF 281 (807)
Q Consensus 248 R~~~v~~------~~~~--~~~~~l~~L~~~~~~~Lf~~~a~ 281 (807)
...+... .+.. ...+++++++.++-.+++.+.+.
T Consensus 151 ~~~~~~~~~~~~p~L~sRf~~~i~f~~~~~~el~~Il~~~~~ 192 (261)
T TIGR02881 151 YSDEMDYFLSLNPGLRSRFPISIDFPDYTVEELMEIAERMVK 192 (261)
T ss_pred CcchhHHHHhcChHHHhccceEEEECCCCHHHHHHHHHHHHH
Confidence 4432211 0111 23688999999999999987764
No 154
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=97.77 E-value=0.0019 Score=71.66 Aligned_cols=154 Identities=17% Similarity=0.163 Sum_probs=88.7
Q ss_pred ceEEEEEccCCChHHHHHHHHHcCcccccccceEEEEEeCCCCCHHHHHHHHHHHcCCCCCCCccHHHHHHHHHHHHhCC
Q 047321 131 LDVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSNTFEEISVAKAIIEGLGVSAFGLSEFESLMKQIQEYITGK 210 (807)
Q Consensus 131 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k 210 (807)
...+.|+|+.|+|||+|++.+++. +...-..+++++ ...+...+...+... . ...+++..+ +
T Consensus 141 ~npl~L~G~~G~GKTHLl~Ai~~~--l~~~~~~v~yi~------~~~f~~~~~~~l~~~-----~----~~~f~~~~~-~ 202 (445)
T PRK12422 141 FNPIYLFGPEGSGKTHLMQAAVHA--LRESGGKILYVR------SELFTEHLVSAIRSG-----E----MQRFRQFYR-N 202 (445)
T ss_pred CceEEEEcCCCCCHHHHHHHHHHH--HHHcCCCEEEee------HHHHHHHHHHHHhcc-----h----HHHHHHHcc-c
Confidence 467889999999999999999984 322222344543 233444444444221 1 122333333 4
Q ss_pred ceEEEEeCCCCCCccC--hHHHHHhhcCC-CCCcEEEEEcCCH-H--------HHHHhCCCceEeCCCCChhhHHHHHHH
Q 047321 211 KIFLVLDDVWDGDYKK--WDPFFSCLKNG-HHESKILITTHDR-S--------VALQLGSIDIIPVKELGEGECWLLFKQ 278 (807)
Q Consensus 211 ~~LlVlDdv~~~~~~~--~~~l~~~l~~~-~~gs~IliTTR~~-~--------v~~~~~~~~~~~l~~L~~~~~~~Lf~~ 278 (807)
.-+|++||+....... .+.+...+... ..|..||+||... . +...+...-.+++.+++.++-..++.+
T Consensus 203 ~dvLiIDDiq~l~~k~~~qeelf~l~N~l~~~~k~IIlts~~~p~~l~~l~~rL~SR~~~Gl~~~l~~pd~e~r~~iL~~ 282 (445)
T PRK12422 203 VDALFIEDIEVFSGKGATQEEFFHTFNSLHTEGKLIVISSTCAPQDLKAMEERLISRFEWGIAIPLHPLTKEGLRSFLER 282 (445)
T ss_pred CCEEEEcchhhhcCChhhHHHHHHHHHHHHHCCCcEEEecCCCHHHHhhhHHHHHhhhcCCeEEecCCCCHHHHHHHHHH
Confidence 5588899985532221 22344443321 2355688887542 1 222233345889999999999999998
Q ss_pred HHhccCCccCccchHHHHHHHHHHcCCC
Q 047321 279 IAFLRRSFEDCEKLEPIGRKIASKCKGL 306 (807)
Q Consensus 279 ~a~~~~~~~~~~~~~~~~~~I~~~c~gl 306 (807)
++-..+. .--.++...|+..+.|.
T Consensus 283 k~~~~~~----~l~~evl~~la~~~~~d 306 (445)
T PRK12422 283 KAEALSI----RIEETALDFLIEALSSN 306 (445)
T ss_pred HHHHcCC----CCCHHHHHHHHHhcCCC
Confidence 8754321 11245667677777654
No 155
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.77 E-value=0.00024 Score=68.49 Aligned_cols=121 Identities=21% Similarity=0.231 Sum_probs=69.4
Q ss_pred CceEEEEEccCCChHHHHHHHHHcCcccccccceEEEEEeCCCCCHHHHHHHHHHHcCC--CC---CC---------Ccc
Q 047321 130 GLDVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSNTFEEISVAKAIIEGLGV--SA---FG---------LSE 195 (807)
Q Consensus 130 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~--~~---~~---------~~~ 195 (807)
.-.+++|+|++|+|||||++.++.... ...+.+++.-....... ..+...++. +. .. ...
T Consensus 25 ~Ge~~~i~G~nGsGKStLl~~l~G~~~---~~~G~i~~~g~~~~~~~---~~~~~~i~~~~q~~~~~~~~tv~~~~~LS~ 98 (173)
T cd03230 25 KGEIYGLLGPNGAGKTTLIKIILGLLK---PDSGEIKVLGKDIKKEP---EEVKRRIGYLPEEPSLYENLTVRENLKLSG 98 (173)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCC---CCCeEEEECCEEcccch---HhhhccEEEEecCCccccCCcHHHHhhcCH
Confidence 456999999999999999999986321 12233332110000000 000001100 00 00 222
Q ss_pred HHHHHHHHHHHHhCCceEEEEeCCCCC-CccChHHHHHhhcCC-CCCcEEEEEcCCHHHHHHh
Q 047321 196 FESLMKQIQEYITGKKIFLVLDDVWDG-DYKKWDPFFSCLKNG-HHESKILITTHDRSVALQL 256 (807)
Q Consensus 196 ~~~~~~~l~~~l~~k~~LlVlDdv~~~-~~~~~~~l~~~l~~~-~~gs~IliTTR~~~v~~~~ 256 (807)
.+...-.+.+.+..++-++++|++... |......+...+... ..|..||++|++......+
T Consensus 99 G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~th~~~~~~~~ 161 (173)
T cd03230 99 GMKQRLALAQALLHDPELLILDEPTSGLDPESRREFWELLRELKKEGKTILLSSHILEEAERL 161 (173)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHh
Confidence 333444577888899999999999665 444455555555543 2367899999998766544
No 156
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=97.77 E-value=0.00027 Score=70.22 Aligned_cols=179 Identities=21% Similarity=0.183 Sum_probs=104.1
Q ss_pred CccccccchHHHHHHHHhCCCCCCCCCceEEEEEccCCChHHHHHHHHHcCcccccccceEEEEEeCCCCCHHHHHHHHH
Q 047321 104 GGVCGRVDEKNELLSKLLCGSSEQQKGLDVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSNTFEEISVAKAII 183 (807)
Q Consensus 104 ~~~vGR~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 183 (807)
.+|||.++-++++.=.+...... +...--+.++|++|.||||||..+++. +...+. ++-.....-..-+..|+
T Consensus 26 ~efiGQ~~vk~~L~ifI~AAk~r-~e~lDHvLl~GPPGlGKTTLA~IIA~E--mgvn~k----~tsGp~leK~gDlaaiL 98 (332)
T COG2255 26 DEFIGQEKVKEQLQIFIKAAKKR-GEALDHVLLFGPPGLGKTTLAHIIANE--LGVNLK----ITSGPALEKPGDLAAIL 98 (332)
T ss_pred HHhcChHHHHHHHHHHHHHHHhc-CCCcCeEEeeCCCCCcHHHHHHHHHHH--hcCCeE----ecccccccChhhHHHHH
Confidence 47999998888887666544332 456788999999999999999999984 332221 11111111111122222
Q ss_pred HHcCCCCCCCccHHHHHHHHHHHHhCCceEEEEeCCCCCCccChHHHHHhhcCC--------CCCc-----------EEE
Q 047321 184 EGLGVSAFGLSEFESLMKQIQEYITGKKIFLVLDDVWDGDYKKWDPFFSCLKNG--------HHES-----------KIL 244 (807)
Q Consensus 184 ~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~--------~~gs-----------~Il 244 (807)
..+ ...-+|.+|++..-....-+.+...+.+. ++++ -|=
T Consensus 99 t~L----------------------e~~DVLFIDEIHrl~~~vEE~LYpaMEDf~lDI~IG~gp~Arsv~ldLppFTLIG 156 (332)
T COG2255 99 TNL----------------------EEGDVLFIDEIHRLSPAVEEVLYPAMEDFRLDIIIGKGPAARSIRLDLPPFTLIG 156 (332)
T ss_pred hcC----------------------CcCCeEEEehhhhcChhHHHHhhhhhhheeEEEEEccCCccceEeccCCCeeEee
Confidence 222 13345555766544332222233322222 2233 355
Q ss_pred EEcCCHHHHHHhCC--CceEeCCCCChhhHHHHHHHHHhccCCccCccchHHHHHHHHHHcCCCHHHHHHHHH
Q 047321 245 ITTHDRSVALQLGS--IDIIPVKELGEGECWLLFKQIAFLRRSFEDCEKLEPIGRKIASKCKGLPLAAKVIGN 315 (807)
Q Consensus 245 iTTR~~~v~~~~~~--~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~~~~I~~~c~glPLai~~~~~ 315 (807)
.|||--.+..-+.. .-+.+++-.+.+|-.++..+.|..-+. +-..+.+.+|+++..|-|--+.-+-+
T Consensus 157 ATTr~G~lt~PLrdRFGi~~rlefY~~~eL~~Iv~r~a~~l~i----~i~~~~a~eIA~rSRGTPRIAnRLLr 225 (332)
T COG2255 157 ATTRAGMLTNPLRDRFGIIQRLEFYTVEELEEIVKRSAKILGI----EIDEEAALEIARRSRGTPRIANRLLR 225 (332)
T ss_pred eccccccccchhHHhcCCeeeeecCCHHHHHHHHHHHHHHhCC----CCChHHHHHHHHhccCCcHHHHHHHH
Confidence 78886443332222 126788999999999999888743222 22356789999999999975544333
No 157
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=97.75 E-value=0.00018 Score=69.41 Aligned_cols=122 Identities=15% Similarity=0.119 Sum_probs=68.1
Q ss_pred CceEEEEEccCCChHHHHHHHHHcCcccccccceEEEEEeCC--CCCHHHHHHHHHHHcCCCC-CC-------CccHHHH
Q 047321 130 GLDVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSN--TFEEISVAKAIIEGLGVSA-FG-------LSEFESL 199 (807)
Q Consensus 130 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~--~~~~~~~~~~i~~~l~~~~-~~-------~~~~~~~ 199 (807)
.-.+++|+|++|+|||||++.++.-.. ...+.+++.-.. ........+.+.-...... .. ....+..
T Consensus 27 ~Ge~~~i~G~nGsGKStLl~~l~G~~~---~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~~~lLS~G~~q 103 (173)
T cd03246 27 PGESLAIIGPSGSGKSTLARLILGLLR---PTSGRVRLDGADISQWDPNELGDHVGYLPQDDELFSGSIAENILSGGQRQ 103 (173)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhccC---CCCCeEEECCEEcccCCHHHHHhheEEECCCCccccCcHHHHCcCHHHHH
Confidence 456999999999999999999986321 122222221100 0111111111100000000 00 2223334
Q ss_pred HHHHHHHHhCCceEEEEeCCCCC-CccChHHHHHhhcCC-CCCcEEEEEcCCHHHHH
Q 047321 200 MKQIQEYITGKKIFLVLDDVWDG-DYKKWDPFFSCLKNG-HHESKILITTHDRSVAL 254 (807)
Q Consensus 200 ~~~l~~~l~~k~~LlVlDdv~~~-~~~~~~~l~~~l~~~-~~gs~IliTTR~~~v~~ 254 (807)
.-.+.+.+..++-++++|++... |......+...+... ..|..||++|++.+...
T Consensus 104 rv~la~al~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~ 160 (173)
T cd03246 104 RLGLARALYGNPRILVLDEPNSHLDVEGERALNQAIAALKAAGATRIVIAHRPETLA 160 (173)
T ss_pred HHHHHHHHhcCCCEEEEECCccccCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHH
Confidence 45577778888899999999765 444455555555432 34678999999987764
No 158
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=97.71 E-value=0.00029 Score=70.43 Aligned_cols=126 Identities=21% Similarity=0.213 Sum_probs=79.9
Q ss_pred CceEEEEEccCCChHHHHHHHHHcCcccccccceEEEEEeCC-----CCCHHHHHHHHHHHcCCCC-------CCCccHH
Q 047321 130 GLDVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSN-----TFEEISVAKAIIEGLGVSA-------FGLSEFE 197 (807)
Q Consensus 130 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~-----~~~~~~~~~~i~~~l~~~~-------~~~~~~~ 197 (807)
...+++|+|.+|+||||+++.+.. ....-.+.+++.-.+ .....+...++++.++... .+.....
T Consensus 38 ~ge~~glVGESG~GKSTlgr~i~~---L~~pt~G~i~f~g~~i~~~~~~~~~~~v~elL~~Vgl~~~~~~ryPhelSGGQ 114 (268)
T COG4608 38 EGETLGLVGESGCGKSTLGRLILG---LEEPTSGEILFEGKDITKLSKEERRERVLELLEKVGLPEEFLYRYPHELSGGQ 114 (268)
T ss_pred CCCEEEEEecCCCCHHHHHHHHHc---CcCCCCceEEEcCcchhhcchhHHHHHHHHHHHHhCCCHHHhhcCCcccCchh
Confidence 567999999999999999999986 323233344433111 1223344566677666432 1122233
Q ss_pred HHHHHHHHHHhCCceEEEEeCCCCC-CccChHHHHHhhcC--CCCCcEEEEEcCCHHHHHHhCC
Q 047321 198 SLMKQIQEYITGKKIFLVLDDVWDG-DYKKWDPFFSCLKN--GHHESKILITTHDRSVALQLGS 258 (807)
Q Consensus 198 ~~~~~l~~~l~~k~~LlVlDdv~~~-~~~~~~~l~~~l~~--~~~gs~IliTTR~~~v~~~~~~ 258 (807)
...-.+.+.+.-++-++|.|+..+. |...-.++...+.+ ...|-..+.+|++-.|+..+..
T Consensus 115 rQRi~IARALal~P~liV~DEpvSaLDvSiqaqIlnLL~dlq~~~~lt~lFIsHDL~vv~~isd 178 (268)
T COG4608 115 RQRIGIARALALNPKLIVADEPVSALDVSVQAQILNLLKDLQEELGLTYLFISHDLSVVRYISD 178 (268)
T ss_pred hhhHHHHHHHhhCCcEEEecCchhhcchhHHHHHHHHHHHHHHHhCCeEEEEEEEHHhhhhhcc
Confidence 3334578889999999999998554 32222334444433 2456779999999999988765
No 159
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.71 E-value=0.00048 Score=66.62 Aligned_cols=133 Identities=21% Similarity=0.218 Sum_probs=79.3
Q ss_pred CceEEEEEccCCChHHHHHHHHHcCcccc--c---ccc--------------eEEEEEeCCCC-----------------
Q 047321 130 GLDVISLVGLGGIGKTTLAQLAYNNDEVK--R---NFE--------------KVIWVCVSNTF----------------- 173 (807)
Q Consensus 130 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~--~---~f~--------------~~~wv~~~~~~----------------- 173 (807)
.-.+.+|.||+|+||||||..+..++..+ + -|+ .-+++....+.
T Consensus 29 ~GEvhaiMGPNGsGKSTLa~~i~G~p~Y~Vt~G~I~~~GedI~~l~~~ERAr~GifLafQ~P~ei~GV~~~~fLr~a~n~ 108 (251)
T COG0396 29 EGEVHAIMGPNGSGKSTLAYTIMGHPKYEVTEGEILFDGEDILELSPDERARAGIFLAFQYPVEIPGVTNSDFLRAAMNA 108 (251)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCCceEecceEEECCcccccCCHhHHHhcCCEEeecCCccCCCeeHHHHHHHHHHh
Confidence 45789999999999999999997654321 0 111 11222111111
Q ss_pred ---------CHHHHHHHHHHHcCCC--------CCCCccHHHHHHHHHHHHhCCceEEEEeCCCCC-CccChHHHHHhhc
Q 047321 174 ---------EEISVAKAIIEGLGVS--------AFGLSEFESLMKQIQEYITGKKIFLVLDDVWDG-DYKKWDPFFSCLK 235 (807)
Q Consensus 174 ---------~~~~~~~~i~~~l~~~--------~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~-~~~~~~~l~~~l~ 235 (807)
.....++..++.++.. ..+....+.....+.+.+--++-+.|||+.++. |.+....+...+.
T Consensus 109 ~~~~~~~~~~~~~~~~e~~~~l~~~~~~l~R~vN~GFSGGEkKR~EilQ~~~lePkl~ILDE~DSGLDIdalk~V~~~i~ 188 (251)
T COG0396 109 RRGARGILPEFIKELKEKAELLGLDEEFLERYVNEGFSGGEKKRNEILQLLLLEPKLAILDEPDSGLDIDALKIVAEGIN 188 (251)
T ss_pred hhccccccHHHHHHHHHHHHHcCCCHHHhhcccCCCcCcchHHHHHHHHHHhcCCCEEEecCCCcCccHHHHHHHHHHHH
Confidence 1122233333333332 122334455566677777788999999999765 4444444444433
Q ss_pred C-CCCCcEEEEEcCCHHHHHHhCCCceE
Q 047321 236 N-GHHESKILITTHDRSVALQLGSIDII 262 (807)
Q Consensus 236 ~-~~~gs~IliTTR~~~v~~~~~~~~~~ 262 (807)
. ...|+-++|+|+...++..+.+..+|
T Consensus 189 ~lr~~~~~~liITHy~rll~~i~pD~vh 216 (251)
T COG0396 189 ALREEGRGVLIITHYQRLLDYIKPDKVH 216 (251)
T ss_pred HHhcCCCeEEEEecHHHHHhhcCCCEEE
Confidence 2 24577799999999999888765544
No 160
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=97.71 E-value=4e-05 Score=84.81 Aligned_cols=193 Identities=25% Similarity=0.355 Sum_probs=109.1
Q ss_pred EEEeeccCCCCccccCCCCceeEEEeCCCCCCCCCCCCccccccccCcc-cceeeecc-ccCCccCeeEecCccCCCccc
Q 047321 472 LGLKFEEGASFPMSIHGLNRLRTLLIYDQSPYNPSLSSSILPELFNKLA-CLRALVIR-QSLRTLEKFVVGGGVDGSNTC 549 (807)
Q Consensus 472 L~l~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~l~~~i~~LP~~i~~L~-~L~~LdL~-~~L~~L~~l~~~~~~~~~~~~ 549 (807)
+....+........+..++.+..|.+.++ .+..+|..++.+. +|+.|+++ ..+..++
T Consensus 98 l~~~~~~~~~~~~~~~~~~~l~~L~l~~n-------~i~~i~~~~~~~~~nL~~L~l~~N~i~~l~-------------- 156 (394)
T COG4886 98 LDLNLNRLRSNISELLELTNLTSLDLDNN-------NITDIPPLIGLLKSNLKELDLSDNKIESLP-------------- 156 (394)
T ss_pred eeccccccccCchhhhcccceeEEecCCc-------ccccCccccccchhhcccccccccchhhhh--------------
Confidence 33344443223444455577788887777 7778887777774 77777776 1111111
Q ss_pred cccccccccccCcccccCCCCCCChhHHHHhhccCCCCCCeEEEEeeccCCCcchhhhhchhhHHHHHHhhcCCCCCCCC
Q 047321 550 RLESLKNLQLLRECGIEGLGNVSHLDEAERLQLYNQQNLLRLRLRFGRVVDGEDEERRRKNEKDKQLLEALQPPLSHLPP 629 (807)
Q Consensus 550 ~i~~L~~L~~L~~L~i~~l~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~l~p~~~~lp~ 629 (807)
..+..+.+|+.|.+.. +.+.. .......+.+|+.|+++.|.+ ..+|.
T Consensus 157 --~~~~~l~~L~~L~l~~----N~l~~-l~~~~~~~~~L~~L~ls~N~i--------------------------~~l~~ 203 (394)
T COG4886 157 --SPLRNLPNLKNLDLSF----NDLSD-LPKLLSNLSNLNNLDLSGNKI--------------------------SDLPP 203 (394)
T ss_pred --hhhhccccccccccCC----chhhh-hhhhhhhhhhhhheeccCCcc--------------------------ccCch
Confidence 2344455555555443 11111 111222567777888877764 34444
Q ss_pred C-CCcc-cceEeccCCcCceeeCcccCCCCCCCCCCCCCCCCCCccccCcccccccccCCCccccchhhhccccCCCCCC
Q 047321 630 L-GKLP-LKKLELRDLESVKRVGNEFLGIEESSEDDPSSSSSSPSVIAFPKLKSLEIDGMKELEEWNYRITRKENISIMP 707 (807)
Q Consensus 630 l-~~L~-L~~L~L~~~~~l~~i~~~~~~~~~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~l~ 707 (807)
. +.+. |++|.+.+...+..+. .+..+.++..|.+.+. .+...+ ..+..++
T Consensus 204 ~~~~~~~L~~l~~~~N~~~~~~~---------------------~~~~~~~l~~l~l~~n-~~~~~~------~~~~~l~ 255 (394)
T COG4886 204 EIELLSALEELDLSNNSIIELLS---------------------SLSNLKNLSGLELSNN-KLEDLP------ESIGNLS 255 (394)
T ss_pred hhhhhhhhhhhhhcCCcceecch---------------------hhhhcccccccccCCc-eeeecc------chhcccc
Confidence 3 3444 7777776643222111 1345666666665543 333322 2345677
Q ss_pred cccEEEEccCCCCCCCcccccCCCCccEEeeccCccccccc
Q 047321 708 RLSSLQIMNCRKLKALPDYLLQTIALQKLSIYSCDLLEELP 748 (807)
Q Consensus 708 ~L~~L~l~~c~~L~~lp~~l~~l~~L~~L~l~~c~~l~~lP 748 (807)
+|+.|+++++ .+..++. +..+.+|+.|++++.......|
T Consensus 256 ~l~~L~~s~n-~i~~i~~-~~~~~~l~~L~~s~n~~~~~~~ 294 (394)
T COG4886 256 NLETLDLSNN-QISSISS-LGSLTNLRELDLSGNSLSNALP 294 (394)
T ss_pred ccceeccccc-ccccccc-ccccCccCEEeccCccccccch
Confidence 8888888877 7777775 7788888888888854443333
No 161
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.69 E-value=0.00015 Score=70.24 Aligned_cols=124 Identities=21% Similarity=0.161 Sum_probs=69.0
Q ss_pred CceEEEEEccCCChHHHHHHHHHcCcccccccceEEEEE---eCCCC-CHHHHHHHHHHHcCCCC-C-C----------C
Q 047321 130 GLDVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVC---VSNTF-EEISVAKAIIEGLGVSA-F-G----------L 193 (807)
Q Consensus 130 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~---~~~~~-~~~~~~~~i~~~l~~~~-~-~----------~ 193 (807)
.-.+++|+|++|+|||||++.++.... ...+.+.+. +.... ......+.+.-...... . . .
T Consensus 25 ~G~~~~i~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~~~l~~~l 101 (178)
T cd03229 25 AGEIVALLGPSGSGKSTLLRCIAGLEE---PDSGSILIDGEDLTDLEDELPPLRRRIGMVFQDFALFPHLTVLENIALGL 101 (178)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC---CCceEEEECCEEccccchhHHHHhhcEEEEecCCccCCCCCHHHheeecC
Confidence 456999999999999999999985321 222333321 11100 01111111100000000 0 0 1
Q ss_pred ccHHHHHHHHHHHHhCCceEEEEeCCCCC-CccChHHHHHhhcCCC--CCcEEEEEcCCHHHHHHh
Q 047321 194 SEFESLMKQIQEYITGKKIFLVLDDVWDG-DYKKWDPFFSCLKNGH--HESKILITTHDRSVALQL 256 (807)
Q Consensus 194 ~~~~~~~~~l~~~l~~k~~LlVlDdv~~~-~~~~~~~l~~~l~~~~--~gs~IliTTR~~~v~~~~ 256 (807)
...+...-.+.+.+..++-++++|++... |....+.+...+.... .|..||++|++.......
T Consensus 102 S~G~~qr~~la~al~~~p~llilDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~ 167 (178)
T cd03229 102 SGGQQQRVALARALAMDPDVLLLDEPTSALDPITRREVRALLKSLQAQLGITVVLVTHDLDEAARL 167 (178)
T ss_pred CHHHHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHh
Confidence 22233444567778889999999999665 5555555666555432 257899999998766543
No 162
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=97.67 E-value=0.00034 Score=64.50 Aligned_cols=87 Identities=24% Similarity=0.156 Sum_probs=45.8
Q ss_pred eEEEEEccCCChHHHHHHHHHcCcccccccceEEEEEeCCCCCHHHHHHHHHHHcCCCCCCCccHHHHHHHHHHHHhC-C
Q 047321 132 DVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSNTFEEISVAKAIIEGLGVSAFGLSEFESLMKQIQEYITG-K 210 (807)
Q Consensus 132 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~-k 210 (807)
..+.|+|++|+||||+|+.++.... .....++++..+........... ............... ....+.+.... +
T Consensus 3 ~~~~l~G~~G~GKTtl~~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 78 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALARELG--PPGGGVIYIDGEDILEEVLDQLL-LIIVGGKKASGSGEL-RLRLALALARKLK 78 (148)
T ss_pred CEEEEECCCCCcHHHHHHHHHhccC--CCCCCEEEECCEEccccCHHHHH-hhhhhccCCCCCHHH-HHHHHHHHHHhcC
Confidence 5789999999999999999987422 22123445544333222211111 111111111122222 22333344433 3
Q ss_pred ceEEEEeCCCCC
Q 047321 211 KIFLVLDDVWDG 222 (807)
Q Consensus 211 ~~LlVlDdv~~~ 222 (807)
..++++|+++..
T Consensus 79 ~~viiiDei~~~ 90 (148)
T smart00382 79 PDVLILDEITSL 90 (148)
T ss_pred CCEEEEECCccc
Confidence 599999999664
No 163
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=97.66 E-value=0.0014 Score=69.63 Aligned_cols=97 Identities=12% Similarity=0.115 Sum_probs=68.4
Q ss_pred CCceEEEEeCCCCCCccChHHHHHhhcCCCCCcEEEEEcCCHHH-HHH-hCCCceEeCCCCChhhHHHHHHHHHhccCCc
Q 047321 209 GKKIFLVLDDVWDGDYKKWDPFFSCLKNGHHESKILITTHDRSV-ALQ-LGSIDIIPVKELGEGECWLLFKQIAFLRRSF 286 (807)
Q Consensus 209 ~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~IliTTR~~~v-~~~-~~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~ 286 (807)
+++-++|+|++..-+......+...+..-..++.+|+||.+... ... ..-...+.+.+++.+++.+.+.... ..
T Consensus 105 ~~~kv~iI~~a~~m~~~aaNaLLK~LEEPp~~~~fiL~t~~~~~ll~TI~SRc~~~~~~~~~~~~~~~~L~~~~-~~--- 180 (328)
T PRK05707 105 GGRKVVLIEPAEAMNRNAANALLKSLEEPSGDTVLLLISHQPSRLLPTIKSRCQQQACPLPSNEESLQWLQQAL-PE--- 180 (328)
T ss_pred CCCeEEEECChhhCCHHHHHHHHHHHhCCCCCeEEEEEECChhhCcHHHHhhceeeeCCCcCHHHHHHHHHHhc-cc---
Confidence 45556678999777777788888888876677888888887543 222 2225689999999999998887653 11
Q ss_pred cCccchHHHHHHHHHHcCCCHHHHHHH
Q 047321 287 EDCEKLEPIGRKIASKCKGLPLAAKVI 313 (807)
Q Consensus 287 ~~~~~~~~~~~~I~~~c~glPLai~~~ 313 (807)
...+.+..++..++|.|..+..+
T Consensus 181 ----~~~~~~~~~l~la~Gsp~~A~~l 203 (328)
T PRK05707 181 ----SDERERIELLTLAGGSPLRALQL 203 (328)
T ss_pred ----CChHHHHHHHHHcCCCHHHHHHH
Confidence 11234567789999999865544
No 164
>PRK08116 hypothetical protein; Validated
Probab=97.66 E-value=0.00023 Score=73.41 Aligned_cols=103 Identities=21% Similarity=0.211 Sum_probs=59.8
Q ss_pred eEEEEEccCCChHHHHHHHHHcCcccccccceEEEEEeCCCCCHHHHHHHHHHHcCCCCCCCccHHHHHHHHHHHHhCCc
Q 047321 132 DVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSNTFEEISVAKAIIEGLGVSAFGLSEFESLMKQIQEYITGKK 211 (807)
Q Consensus 132 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~ 211 (807)
..+.|+|..|+|||.||..+++. ....-..+++++ ...++..+........ .... ..+.+.+.+-
T Consensus 115 ~gl~l~G~~GtGKThLa~aia~~--l~~~~~~v~~~~------~~~ll~~i~~~~~~~~--~~~~----~~~~~~l~~~- 179 (268)
T PRK08116 115 VGLLLWGSVGTGKTYLAACIANE--LIEKGVPVIFVN------FPQLLNRIKSTYKSSG--KEDE----NEIIRSLVNA- 179 (268)
T ss_pred ceEEEECCCCCCHHHHHHHHHHH--HHHcCCeEEEEE------HHHHHHHHHHHHhccc--cccH----HHHHHHhcCC-
Confidence 45889999999999999999984 322233455554 3445555544433211 1111 1223334433
Q ss_pred eEEEEeCCCCCCccChHH--HHHhhcCC-CCCcEEEEEcCC
Q 047321 212 IFLVLDDVWDGDYKKWDP--FFSCLKNG-HHESKILITTHD 249 (807)
Q Consensus 212 ~LlVlDdv~~~~~~~~~~--l~~~l~~~-~~gs~IliTTR~ 249 (807)
-||||||+..+....|.. +...+... ..|..+||||..
T Consensus 180 dlLviDDlg~e~~t~~~~~~l~~iin~r~~~~~~~IiTsN~ 220 (268)
T PRK08116 180 DLLILDDLGAERDTEWAREKVYNIIDSRYRKGLPTIVTTNL 220 (268)
T ss_pred CEEEEecccCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCC
Confidence 389999996554445544 44444432 345568888864
No 165
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.64 E-value=0.00039 Score=79.52 Aligned_cols=200 Identities=10% Similarity=0.104 Sum_probs=100.2
Q ss_pred CccccccchHHHHHHHHhCCCCCCCCCceEEEEEccCCChHHHHHHHHHcCcccccccceEEEEEeCC---CCCHHHHHH
Q 047321 104 GGVCGRVDEKNELLSKLLCGSSEQQKGLDVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSN---TFEEISVAK 180 (807)
Q Consensus 104 ~~~vGR~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~---~~~~~~~~~ 180 (807)
.+++|.++.++++..++...... ....+++.|+|++|+||||+++.++.... ++..-|++-.. ..+...+..
T Consensus 84 del~~~~~ki~~l~~~l~~~~~~-~~~~~illL~GP~GsGKTTl~~~la~~l~----~~~~Ew~npv~~~~~~~~~~~~~ 158 (637)
T TIGR00602 84 HELAVHKKKIEEVETWLKAQVLE-NAPKRILLITGPSGCGKSTTIKILSKELG----IQVQEWSNPTLPDFQKNDHKVTL 158 (637)
T ss_pred HHhcCcHHHHHHHHHHHHhcccc-cCCCcEEEEECCCCCCHHHHHHHHHHHhh----hHHHHHhhhhhhcccccccccch
Confidence 57999999999999998754321 23456899999999999999999987321 22222321100 000001111
Q ss_pred HHHHHcCCCCCCCccHHHHHHHHHH---H----HhCCceEEEEeCCCCC---CccChHHHHH-hhcCCCCCcEEEEEcCC
Q 047321 181 AIIEGLGVSAFGLSEFESLMKQIQE---Y----ITGKKIFLVLDDVWDG---DYKKWDPFFS-CLKNGHHESKILITTHD 249 (807)
Q Consensus 181 ~i~~~l~~~~~~~~~~~~~~~~l~~---~----l~~k~~LlVlDdv~~~---~~~~~~~l~~-~l~~~~~gs~IliTTR~ 249 (807)
.+.+.+................... . ..+++.+|++||+.+. .......+.. .....+.-.-|+|||-+
T Consensus 159 s~~~~~~~~~s~~~~F~~fl~~a~~~~~~~g~~~~~~~~IILIDEiPn~~~r~~~~lq~lLr~~~~e~~~~pLI~I~TE~ 238 (637)
T TIGR00602 159 SLESCFSNFQSQIEVFSEFLLRATNKLQMLGDDLMTDKKIILVEDLPNQFYRDTRALHEILRWKYVSIGRCPLVFIITES 238 (637)
T ss_pred hhhhccccccchHHHHHHHHHHHHhhhcccccccCCceeEEEeecchhhchhhHHHHHHHHHHHhhcCCCceEEEEecCC
Confidence 1222221111111122222222111 1 1356789999998332 1223333333 22222222345566632
Q ss_pred HH---------HH------HHh-C--CCceEeCCCCChhhHHHHHHHHHhccCCccCcc---chHHHHHHHHHHcCCCHH
Q 047321 250 RS---------VA------LQL-G--SIDIIPVKELGEGECWLLFKQIAFLRRSFEDCE---KLEPIGRKIASKCKGLPL 308 (807)
Q Consensus 250 ~~---------v~------~~~-~--~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~---~~~~~~~~I~~~c~glPL 308 (807)
.. .. ..+ . ....+.+.++...+-...+.+.+-......... .-.+....|+..++|---
T Consensus 239 ~~~~~~~~~~~f~~~~lL~~eLls~~rv~~I~FnPia~t~l~K~L~rIl~~E~~~~~~~~~~p~~~~l~~I~~~s~GDiR 318 (637)
T TIGR00602 239 LEGDNNQRRLLFPAETIMNKEILEEPRVSNISFNPIAPTIMKKFLNRIVTIEAKKNGEKIKVPKKTSVELLCQGCSGDIR 318 (637)
T ss_pred ccccccccccccchhcccCHhHhcccceeEEEeCCCCHHHHHHHHHHHHHhhhhccccccccCCHHHHHHHHHhCCChHH
Confidence 11 10 011 1 124588999999997777777664322111011 113456777777777543
No 166
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=97.64 E-value=0.00043 Score=67.34 Aligned_cols=120 Identities=19% Similarity=0.219 Sum_probs=68.5
Q ss_pred CceEEEEEccCCChHHHHHHHHHcCcccccccceEEEEE-------------------eCCC------CCHHHHHHHHHH
Q 047321 130 GLDVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVC-------------------VSNT------FEEISVAKAIIE 184 (807)
Q Consensus 130 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~-------------------~~~~------~~~~~~~~~i~~ 184 (807)
.-.+++|+|++|+|||||++.+..-... ..+.+++. +.+. +....+.+.+.-
T Consensus 25 ~G~~~~i~G~nGsGKSTLl~~l~G~~~~---~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~t~~e~l~~ 101 (182)
T cd03215 25 AGEIVGIAGLVGNGQTELAEALFGLRPP---ASGEITLDGKPVTRRSPRDAIRAGIAYVPEDRKREGLVLDLSVAENIAL 101 (182)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCCC---CCceEEECCEECCccCHHHHHhCCeEEecCCcccCcccCCCcHHHHHHH
Confidence 4468999999999999999999763221 11222221 1111 000111111111
Q ss_pred HcCCCCCCCccHHHHHHHHHHHHhCCceEEEEeCCCCC-CccChHHHHHhhcCC-CCCcEEEEEcCCHHHHHHhC
Q 047321 185 GLGVSAFGLSEFESLMKQIQEYITGKKIFLVLDDVWDG-DYKKWDPFFSCLKNG-HHESKILITTHDRSVALQLG 257 (807)
Q Consensus 185 ~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~-~~~~~~~l~~~l~~~-~~gs~IliTTR~~~v~~~~~ 257 (807)
... ....+...-.+.+.+-.++-++++|++... |....+.+...+... ..|..||++|++......+.
T Consensus 102 ~~~-----LS~G~~qrl~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~~ 171 (182)
T cd03215 102 SSL-----LSGGNQQKVVLARWLARDPRVLILDEPTRGVDVGAKAEIYRLIRELADAGKAVLLISSELDELLGLC 171 (182)
T ss_pred Hhh-----cCHHHHHHHHHHHHHccCCCEEEECCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhC
Confidence 000 122223334577778889999999999665 555555566655533 24678999999976555433
No 167
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=97.64 E-value=0.00018 Score=65.82 Aligned_cols=96 Identities=21% Similarity=0.153 Sum_probs=52.8
Q ss_pred EEEEccCCChHHHHHHHHHcCcccccccceEEEEEeCCCCCHHHHHHHHHHHcCCCCCCCccHHHHHHHHHHHHhCC-ce
Q 047321 134 ISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSNTFEEISVAKAIIEGLGVSAFGLSEFESLMKQIQEYITGK-KI 212 (807)
Q Consensus 134 i~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k-~~ 212 (807)
|.|+|+.|+||||+|+.+++.. ..+ .+.++.+...+ .........+...+.+.-+.. +.
T Consensus 1 ill~G~~G~GKT~l~~~la~~l--~~~---~~~i~~~~~~~---------------~~~~~~~~~i~~~~~~~~~~~~~~ 60 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYL--GFP---FIEIDGSELIS---------------SYAGDSEQKIRDFFKKAKKSAKPC 60 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHT--TSE---EEEEETTHHHT---------------SSTTHHHHHHHHHHHHHHHTSTSE
T ss_pred CEEECcCCCCeeHHHHHHHhhc--ccc---ccccccccccc---------------ccccccccccccccccccccccce
Confidence 5799999999999999999842 222 23333221110 011122233333344433344 89
Q ss_pred EEEEeCCCCCCccC-----------hHHHHHhhcCCC---CCcEEEEEcCC
Q 047321 213 FLVLDDVWDGDYKK-----------WDPFFSCLKNGH---HESKILITTHD 249 (807)
Q Consensus 213 LlVlDdv~~~~~~~-----------~~~l~~~l~~~~---~gs~IliTTR~ 249 (807)
+|++||+..-.... ...+...+.... .+..||.||..
T Consensus 61 vl~iDe~d~l~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~~~vI~ttn~ 111 (132)
T PF00004_consen 61 VLFIDEIDKLFPKSQPSSSSFEQRLLNQLLSLLDNPSSKNSRVIVIATTNS 111 (132)
T ss_dssp EEEEETGGGTSHHCSTSSSHHHHHHHHHHHHHHHTTTTTSSSEEEEEEESS
T ss_pred eeeeccchhcccccccccccccccccceeeecccccccccccceeEEeeCC
Confidence 99999995433232 344555554433 23567777765
No 168
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=97.63 E-value=0.00057 Score=67.92 Aligned_cols=128 Identities=21% Similarity=0.273 Sum_probs=72.5
Q ss_pred CceEEEEEccCCChHHHHHHHHHcCccc-cc--ccc-----------eEEEEEeCCC--C---CHH--------------
Q 047321 130 GLDVISLVGLGGIGKTTLAQLAYNNDEV-KR--NFE-----------KVIWVCVSNT--F---EEI-------------- 176 (807)
Q Consensus 130 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~-~~--~f~-----------~~~wv~~~~~--~---~~~-------------- 176 (807)
.-.+++|+|++|+|||||++.++.-... .+ .++ .+.|+.-... + ++.
T Consensus 25 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~i~~~~q~~~~~~~~~tv~e~l~~~~~~~~~~~ 104 (205)
T cd03226 25 AGEIIALTGKNGAGKTTLAKILAGLIKESSGSILLNGKPIKAKERRKSIGYVMQDVDYQLFTDSVREELLLGLKELDAGN 104 (205)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEhhhHHhhcceEEEecChhhhhhhccHHHHHhhhhhhcCccH
Confidence 4569999999999999999999753110 00 000 1222221110 0 110
Q ss_pred HHHHHHHHHcCCCC------CCCccHHHHHHHHHHHHhCCceEEEEeCCCCC-CccChHHHHHhhcCC-CCCcEEEEEcC
Q 047321 177 SVAKAIIEGLGVSA------FGLSEFESLMKQIQEYITGKKIFLVLDDVWDG-DYKKWDPFFSCLKNG-HHESKILITTH 248 (807)
Q Consensus 177 ~~~~~i~~~l~~~~------~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~-~~~~~~~l~~~l~~~-~~gs~IliTTR 248 (807)
....++++.++... ......+...-.+.+.+..++-+++||++... |....+.+...+... ..|..||++|+
T Consensus 105 ~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sH 184 (205)
T cd03226 105 EQAETVLKDLDLYALKERHPLSLSGGQKQRLAIAAALLSGKDLLIFDEPTSGLDYKNMERVGELIRELAAQGKAVIVITH 184 (205)
T ss_pred HHHHHHHHHcCCchhcCCCchhCCHHHHHHHHHHHHHHhCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEeC
Confidence 11233344443321 11122333344567777788999999999765 455555566665543 34667999999
Q ss_pred CHHHHHHhC
Q 047321 249 DRSVALQLG 257 (807)
Q Consensus 249 ~~~v~~~~~ 257 (807)
+......+.
T Consensus 185 ~~~~~~~~~ 193 (205)
T cd03226 185 DYEFLAKVC 193 (205)
T ss_pred CHHHHHHhC
Confidence 987665443
No 169
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=97.63 E-value=0.0004 Score=69.56 Aligned_cols=59 Identities=22% Similarity=0.314 Sum_probs=40.6
Q ss_pred HHHHHHHHHhCCceEEEEeCCCCC-CccChHHHHHhhcCC-CCCcEEEEEcCCHHHHHHhC
Q 047321 199 LMKQIQEYITGKKIFLVLDDVWDG-DYKKWDPFFSCLKNG-HHESKILITTHDRSVALQLG 257 (807)
Q Consensus 199 ~~~~l~~~l~~k~~LlVlDdv~~~-~~~~~~~l~~~l~~~-~~gs~IliTTR~~~v~~~~~ 257 (807)
..-.+.+.+..++-++++|++... |......+...+... ..|..||++|++.+....+.
T Consensus 139 qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~sH~~~~~~~~~ 199 (213)
T cd03235 139 QRVLLARALVQDPDLLLLDEPFAGVDPKTQEDIYELLRELRREGMTILVVTHDLGLVLEYF 199 (213)
T ss_pred HHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhc
Confidence 344466777788899999999765 555555566655543 25677999999987665543
No 170
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=97.62 E-value=0.00074 Score=79.32 Aligned_cols=155 Identities=17% Similarity=0.178 Sum_probs=85.9
Q ss_pred ccccccchHHHHHHHHhCCCCCCCCCceEEEEEccCCChHHHHHHHHHcCcc---cccc-cceEEEEEeCCCCCHHHHHH
Q 047321 105 GVCGRVDEKNELLSKLLCGSSEQQKGLDVISLVGLGGIGKTTLAQLAYNNDE---VKRN-FEKVIWVCVSNTFEEISVAK 180 (807)
Q Consensus 105 ~~vGR~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~---~~~~-f~~~~wv~~~~~~~~~~~~~ 180 (807)
.++||+++++++++.|.... ..-+.++|++|+|||++|+.++.... +... .++.+|.. +...
T Consensus 187 ~liGR~~ei~~~i~iL~r~~------~~n~LLvGppGvGKT~lae~la~~i~~~~vP~~l~~~~~~~l-----~~~~--- 252 (758)
T PRK11034 187 PLIGREKELERAIQVLCRRR------KNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSL-----DIGS--- 252 (758)
T ss_pred cCcCCCHHHHHHHHHHhccC------CCCeEEECCCCCCHHHHHHHHHHHHHhcCCCchhcCCeEEec-----cHHH---
Confidence 48999999999999997532 23446899999999999999886311 1111 13344421 1111
Q ss_pred HHHHHcCCCCCCCccHHHHHHHHHHHH-hCCceEEEEeCCCCC--------CccChHH-HHHhhcCCCCCcEEEEEcCCH
Q 047321 181 AIIEGLGVSAFGLSEFESLMKQIQEYI-TGKKIFLVLDDVWDG--------DYKKWDP-FFSCLKNGHHESKILITTHDR 250 (807)
Q Consensus 181 ~i~~~l~~~~~~~~~~~~~~~~l~~~l-~~k~~LlVlDdv~~~--------~~~~~~~-l~~~l~~~~~gs~IliTTR~~ 250 (807)
++. +.. -..+.+.....+.+.+ +..+.+|++|++..- ....... +...+..+ .-+||-+|...
T Consensus 253 -lla--G~~--~~Ge~e~rl~~l~~~l~~~~~~ILfIDEIh~L~g~g~~~~g~~d~~nlLkp~L~~g--~i~vIgATt~~ 325 (758)
T PRK11034 253 -LLA--GTK--YRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLSSG--KIRVIGSTTYQ 325 (758)
T ss_pred -Hhc--ccc--hhhhHHHHHHHHHHHHHhcCCCEEEeccHHHHhccCCCCCcHHHHHHHHHHHHhCC--CeEEEecCChH
Confidence 111 001 0112233333333333 356789999999531 1111222 33333222 23455555544
Q ss_pred HHHHHh-------CCCceEeCCCCChhhHHHHHHHHH
Q 047321 251 SVALQL-------GSIDIIPVKELGEGECWLLFKQIA 280 (807)
Q Consensus 251 ~v~~~~-------~~~~~~~l~~L~~~~~~~Lf~~~a 280 (807)
+....+ .-...+.+++.+.+++.+++....
T Consensus 326 E~~~~~~~D~AL~rRFq~I~v~ePs~~~~~~IL~~~~ 362 (758)
T PRK11034 326 EFSNIFEKDRALARRFQKIDITEPSIEETVQIINGLK 362 (758)
T ss_pred HHHHHhhccHHHHhhCcEEEeCCCCHHHHHHHHHHHH
Confidence 432211 113478999999999999998654
No 171
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=97.61 E-value=0.00051 Score=69.16 Aligned_cols=57 Identities=21% Similarity=0.248 Sum_probs=40.3
Q ss_pred HHHHHHHHhCCceEEEEeCCCCC-CccChHHHHHhhcCCCCCcEEEEEcCCHHHHHHh
Q 047321 200 MKQIQEYITGKKIFLVLDDVWDG-DYKKWDPFFSCLKNGHHESKILITTHDRSVALQL 256 (807)
Q Consensus 200 ~~~l~~~l~~k~~LlVlDdv~~~-~~~~~~~l~~~l~~~~~gs~IliTTR~~~v~~~~ 256 (807)
.-.+.+.+..++-++++|++... |....+.+...+.....+..||++|++...+..+
T Consensus 141 rv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~ 198 (220)
T cd03263 141 KLSLAIALIGGPSVLLLDEPTSGLDPASRRAIWDLILEVRKGRSIILTTHSMDEAEAL 198 (220)
T ss_pred HHHHHHHHhcCCCEEEECCCCCCCCHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHh
Confidence 34466777888999999999765 5555555666665433456799999998876554
No 172
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=97.61 E-value=5.6e-05 Score=58.60 Aligned_cols=58 Identities=26% Similarity=0.394 Sum_probs=28.1
Q ss_pred CcccEEEEccCCCCCCCcc-cccCCCCccEEeeccCcccccccccccccCCCCCCCCeeeeccC
Q 047321 707 PRLSSLQIMNCRKLKALPD-YLLQTIALQKLSIYSCDLLEELPILEDRRTTDIPRLSSLAIWYC 769 (807)
Q Consensus 707 ~~L~~L~l~~c~~L~~lp~-~l~~l~~L~~L~l~~c~~l~~lP~~~~~~~~~l~~L~~L~i~~c 769 (807)
|+|+.|++++| +++.+|. .+..+++|++|++++| .+..+| ...+.++++|++|++++|
T Consensus 1 p~L~~L~l~~n-~l~~i~~~~f~~l~~L~~L~l~~N-~l~~i~---~~~f~~l~~L~~L~l~~N 59 (61)
T PF13855_consen 1 PNLESLDLSNN-KLTEIPPDSFSNLPNLETLDLSNN-NLTSIP---PDAFSNLPNLRYLDLSNN 59 (61)
T ss_dssp TTESEEEETSS-TESEECTTTTTTGTTESEEEETSS-SESEEE---TTTTTTSTTESEEEETSS
T ss_pred CcCcEEECCCC-CCCccCHHHHcCCCCCCEeEccCC-ccCccC---HHHHcCCCCCCEEeCcCC
Confidence 34555555555 5555543 3445555555555542 344443 123445555555555543
No 173
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=97.60 E-value=0.0007 Score=66.25 Aligned_cols=129 Identities=16% Similarity=0.236 Sum_probs=74.4
Q ss_pred CceEEEEEccCCChHHHHHHHHHcCcc------------c-c-----cccce--EEEEEeCCCCCHH----HH-------
Q 047321 130 GLDVISLVGLGGIGKTTLAQLAYNNDE------------V-K-----RNFEK--VIWVCVSNTFEEI----SV------- 178 (807)
Q Consensus 130 ~~~vi~I~G~gGiGKTtLa~~v~~~~~------------~-~-----~~f~~--~~wv~~~~~~~~~----~~------- 178 (807)
.-.+++|+|.+|+|||||++.+..-.+ . . ..|.. .+|-+-....++. ++
T Consensus 32 ~Ge~lgivGeSGsGKSTL~r~l~Gl~~p~~G~I~~~G~~~~~~~~~~~~~~~VQmVFQDp~~SLnP~~tv~~~l~Epl~~ 111 (252)
T COG1124 32 RGETLGIVGESGSGKSTLARLLAGLEKPSSGSILLDGKPLAPKKRAKAFYRPVQMVFQDPYSSLNPRRTVGRILSEPLRP 111 (252)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhcccCCCCceEEECCcccCccccchhhccceeEEecCCccccCcchhHHHHHhhhhcc
Confidence 557999999999999999999853111 0 0 11222 2232222222221 11
Q ss_pred ---------HHHHHHHcCCCC-------CCCccHHHHHHHHHHHHhCCceEEEEeCCCCC-CccChHHHHHhhcCC--CC
Q 047321 179 ---------AKAIIEGLGVSA-------FGLSEFESLMKQIQEYITGKKIFLVLDDVWDG-DYKKWDPFFSCLKNG--HH 239 (807)
Q Consensus 179 ---------~~~i~~~l~~~~-------~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~-~~~~~~~l~~~l~~~--~~ 239 (807)
..+++++++... .+....+...-.+.+.+.-++-+||+|++.+. |...-..+...|... ..
T Consensus 112 ~~~~~~~~~i~~~L~~VgL~~~~l~R~P~eLSGGQ~QRiaIARAL~~~PklLIlDEptSaLD~siQa~IlnlL~~l~~~~ 191 (252)
T COG1124 112 HGLSKSQQRIAELLDQVGLPPSFLDRRPHELSGGQRQRIAIARALIPEPKLLILDEPTSALDVSVQAQILNLLLELKKER 191 (252)
T ss_pred CCccHHHHHHHHHHHHcCCCHHHHhcCchhcChhHHHHHHHHHHhccCCCEEEecCchhhhcHHHHHHHHHHHHHHHHhc
Confidence 234444444431 12223333344578888899999999998654 322223344444332 34
Q ss_pred CcEEEEEcCCHHHHHHhCC
Q 047321 240 ESKILITTHDRSVALQLGS 258 (807)
Q Consensus 240 gs~IliTTR~~~v~~~~~~ 258 (807)
+-.+|++|++-.++..++.
T Consensus 192 ~lt~l~IsHdl~~v~~~cd 210 (252)
T COG1124 192 GLTYLFISHDLALVEHMCD 210 (252)
T ss_pred CceEEEEeCcHHHHHHHhh
Confidence 5679999999988877654
No 174
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.60 E-value=0.00031 Score=70.21 Aligned_cols=59 Identities=17% Similarity=0.213 Sum_probs=40.9
Q ss_pred HHHHHHHHHhCCceEEEEeCCCCC-CccChHHHHHhhcCC--CCCcEEEEEcCCHHHHHHhC
Q 047321 199 LMKQIQEYITGKKIFLVLDDVWDG-DYKKWDPFFSCLKNG--HHESKILITTHDRSVALQLG 257 (807)
Q Consensus 199 ~~~~l~~~l~~k~~LlVlDdv~~~-~~~~~~~l~~~l~~~--~~gs~IliTTR~~~v~~~~~ 257 (807)
..-.+.+.+..++-++++|++... |....+.+...+... ..|..||++|++......+.
T Consensus 135 qrv~ia~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~ 196 (211)
T cd03298 135 QRVALARVLVRDKPVLLLDEPFAALDPALRAEMLDLVLDLHAETKMTVLMVTHQPEDAKRLA 196 (211)
T ss_pred HHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhhh
Confidence 344466777788899999999765 555556666666543 23677999999987665543
No 175
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.59 E-value=0.0007 Score=68.15 Aligned_cols=127 Identities=20% Similarity=0.212 Sum_probs=71.5
Q ss_pred CceEEEEEccCCChHHHHHHHHHcCccc-cc--cc---------ceEEEEEeC----CCCCHHH----------------
Q 047321 130 GLDVISLVGLGGIGKTTLAQLAYNNDEV-KR--NF---------EKVIWVCVS----NTFEEIS---------------- 177 (807)
Q Consensus 130 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~-~~--~f---------~~~~wv~~~----~~~~~~~---------------- 177 (807)
.-.+++|+|++|+|||||++.++.-... .+ .| ..+.++.-. ...++.+
T Consensus 29 ~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~ 108 (220)
T cd03293 29 EGEFVALVGPSGCGKSTLLRIIAGLERPTSGEVLVDGEPVTGPGPDRGYVFQQDALLPWLTVLDNVALGLELQGVPKAEA 108 (220)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECccccCcEEEEecccccccCCCHHHHHHHHHHHcCCCHHHH
Confidence 4468999999999999999999763211 00 01 112222211 1112211
Q ss_pred --HHHHHHHHcCCCC------CCCccHHHHHHHHHHHHhCCceEEEEeCCCCC-CccChHHHHHhhcCC--CCCcEEEEE
Q 047321 178 --VAKAIIEGLGVSA------FGLSEFESLMKQIQEYITGKKIFLVLDDVWDG-DYKKWDPFFSCLKNG--HHESKILIT 246 (807)
Q Consensus 178 --~~~~i~~~l~~~~------~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~-~~~~~~~l~~~l~~~--~~gs~IliT 246 (807)
...++++.++... ......+...-.+.+.+..++-+++||++... |....+.+...+... ..|..||++
T Consensus 109 ~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiii~ 188 (220)
T cd03293 109 RERAEELLELVGLSGFENAYPHQLSGGMRQRVALARALAVDPDVLLLDEPFSALDALTREQLQEELLDIWRETGKTVLLV 188 (220)
T ss_pred HHHHHHHHHHcCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEE
Confidence 1122333333221 11223333444567777888999999999765 444555566655542 236679999
Q ss_pred cCCHHHHHHh
Q 047321 247 THDRSVALQL 256 (807)
Q Consensus 247 TR~~~v~~~~ 256 (807)
|++......+
T Consensus 189 sH~~~~~~~~ 198 (220)
T cd03293 189 THDIDEAVFL 198 (220)
T ss_pred ecCHHHHHHh
Confidence 9998755443
No 176
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=97.58 E-value=0.00093 Score=80.69 Aligned_cols=154 Identities=15% Similarity=0.094 Sum_probs=83.5
Q ss_pred ccccccchHHHHHHHHhCCCCCCCCCceEEEEEccCCChHHHHHHHHHcCcccc---cc-cceEEEEEeCCCCCHHHHHH
Q 047321 105 GVCGRVDEKNELLSKLLCGSSEQQKGLDVISLVGLGGIGKTTLAQLAYNNDEVK---RN-FEKVIWVCVSNTFEEISVAK 180 (807)
Q Consensus 105 ~~vGR~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~---~~-f~~~~wv~~~~~~~~~~~~~ 180 (807)
.++||+++++++++.|... ....+.++|++|+|||++|+.++....-. .. ....+|.. +...+.
T Consensus 174 ~~igr~~ei~~~~~~l~r~------~~~n~lL~G~pGvGKT~l~~~la~~i~~~~~p~~l~~~~~~~l-----~~~~l~- 241 (852)
T TIGR03346 174 PVIGRDEEIRRTIQVLSRR------TKNNPVLIGEPGVGKTAIVEGLAQRIVNGDVPESLKNKRLLAL-----DMGALI- 241 (852)
T ss_pred cCCCcHHHHHHHHHHHhcC------CCCceEEEcCCCCCHHHHHHHHHHHHhccCCchhhcCCeEEEe-----eHHHHh-
Confidence 4999999999999999743 33456689999999999999887631110 00 12233321 111111
Q ss_pred HHHHHcCCCCCCCccHHHHHHHHHHHH-h-CCceEEEEeCCCCCC-----ccC--hHH-HHHhhcCCCCC-cEEEEEcCC
Q 047321 181 AIIEGLGVSAFGLSEFESLMKQIQEYI-T-GKKIFLVLDDVWDGD-----YKK--WDP-FFSCLKNGHHE-SKILITTHD 249 (807)
Q Consensus 181 ~i~~~l~~~~~~~~~~~~~~~~l~~~l-~-~k~~LlVlDdv~~~~-----~~~--~~~-l~~~l~~~~~g-s~IliTTR~ 249 (807)
. +.. -..+.+.....+.+.+ + +++.+|++|++..-. ... ... +...+ ..| -++|-+|..
T Consensus 242 ---a---~~~-~~g~~e~~l~~~l~~~~~~~~~~ILfIDEih~l~~~g~~~~~~d~~~~Lk~~l---~~g~i~~IgaTt~ 311 (852)
T TIGR03346 242 ---A---GAK-YRGEFEERLKAVLNEVTKSEGQIILFIDELHTLVGAGKAEGAMDAGNMLKPAL---ARGELHCIGATTL 311 (852)
T ss_pred ---h---cch-hhhhHHHHHHHHHHHHHhcCCCeEEEeccHHHhhcCCCCcchhHHHHHhchhh---hcCceEEEEeCcH
Confidence 0 000 0012232233333333 2 468999999985321 001 111 22222 223 345555554
Q ss_pred HHHHHHh-------CCCceEeCCCCChhhHHHHHHHHH
Q 047321 250 RSVALQL-------GSIDIIPVKELGEGECWLLFKQIA 280 (807)
Q Consensus 250 ~~v~~~~-------~~~~~~~l~~L~~~~~~~Lf~~~a 280 (807)
......+ .-...+.++..+.++...++....
T Consensus 312 ~e~r~~~~~d~al~rRf~~i~v~~p~~~~~~~iL~~~~ 349 (852)
T TIGR03346 312 DEYRKYIEKDAALERRFQPVFVDEPTVEDTISILRGLK 349 (852)
T ss_pred HHHHHHhhcCHHHHhcCCEEEeCCCCHHHHHHHHHHHH
Confidence 4432211 113467899999999999887654
No 177
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=97.58 E-value=0.00053 Score=75.22 Aligned_cols=157 Identities=15% Similarity=0.095 Sum_probs=86.7
Q ss_pred ccccccchHHHHHHHHhCCCCC-------CCCCceEEEEEccCCChHHHHHHHHHcCcccccccceEEEEEeCCCCCHHH
Q 047321 105 GVCGRVDEKNELLSKLLCGSSE-------QQKGLDVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSNTFEEIS 177 (807)
Q Consensus 105 ~~vGR~~~~~~l~~~L~~~~~~-------~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~ 177 (807)
++.|.++.++++.+.+..+-.. +-...+-+.++|++|+|||++|+.+++. ....| +.+... +
T Consensus 184 DIgGl~~qi~~l~e~v~lpl~~p~~~~~~gi~~p~gVLL~GPPGTGKT~LAraIA~e--l~~~f-----i~V~~s-e--- 252 (438)
T PTZ00361 184 DIGGLEQQIQEIKEAVELPLTHPELYDDIGIKPPKGVILYGPPGTGKTLLAKAVANE--TSATF-----LRVVGS-E--- 252 (438)
T ss_pred HhcCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHh--hCCCE-----EEEecc-h---
Confidence 4678888888888776421100 0124556889999999999999999983 33333 222111 0
Q ss_pred HHHHHHHHcCCCCCCCccHHHHHHHHHHHHhCCceEEEEeCCCCC-----------CccChHHHHHhhc---C--CCCCc
Q 047321 178 VAKAIIEGLGVSAFGLSEFESLMKQIQEYITGKKIFLVLDDVWDG-----------DYKKWDPFFSCLK---N--GHHES 241 (807)
Q Consensus 178 ~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~-----------~~~~~~~l~~~l~---~--~~~gs 241 (807)
+. ....+ .....+...+.....+.+.+|+||++..- +......+...+. . ...+.
T Consensus 253 L~----~k~~G-----e~~~~vr~lF~~A~~~~P~ILfIDEID~l~~kR~~~~sgg~~e~qr~ll~LL~~Ldg~~~~~~V 323 (438)
T PTZ00361 253 LI----QKYLG-----DGPKLVRELFRVAEENAPSIVFIDEIDAIGTKRYDATSGGEKEIQRTMLELLNQLDGFDSRGDV 323 (438)
T ss_pred hh----hhhcc-----hHHHHHHHHHHHHHhCCCcEEeHHHHHHHhccCCCCCCcccHHHHHHHHHHHHHHhhhcccCCe
Confidence 11 10000 01111222222333467889999997321 0000111222221 1 13356
Q ss_pred EEEEEcCCHHHHHH-h-C---CCceEeCCCCChhhHHHHHHHHHh
Q 047321 242 KILITTHDRSVALQ-L-G---SIDIIPVKELGEGECWLLFKQIAF 281 (807)
Q Consensus 242 ~IliTTR~~~v~~~-~-~---~~~~~~l~~L~~~~~~~Lf~~~a~ 281 (807)
+||+||...+.... + . -...++++..+.++..++|..+..
T Consensus 324 ~VI~ATNr~d~LDpaLlRpGRfd~~I~~~~Pd~~~R~~Il~~~~~ 368 (438)
T PTZ00361 324 KVIMATNRIESLDPALIRPGRIDRKIEFPNPDEKTKRRIFEIHTS 368 (438)
T ss_pred EEEEecCChHHhhHHhccCCeeEEEEEeCCCCHHHHHHHHHHHHh
Confidence 78888876554332 1 1 135789999999999999987763
No 178
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.58 E-value=0.00029 Score=66.66 Aligned_cols=119 Identities=19% Similarity=0.176 Sum_probs=71.0
Q ss_pred CceEEEEEccCCChHHHHHHHHHcCcccccccceEEEEEeCCCC--CHHHHHHHHHHHcCCCCCCCccHHHHHHHHHHHH
Q 047321 130 GLDVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSNTF--EEISVAKAIIEGLGVSAFGLSEFESLMKQIQEYI 207 (807)
Q Consensus 130 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~--~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l 207 (807)
.-.+++|+|.+|+|||||++.+.... ......+++.-.... ..... ...++.. .+....+...-.+.+.+
T Consensus 24 ~g~~~~i~G~nGsGKStll~~l~g~~---~~~~G~i~~~~~~~~~~~~~~~----~~~i~~~-~qlS~G~~~r~~l~~~l 95 (157)
T cd00267 24 AGEIVALVGPNGSGKSTLLRAIAGLL---KPTSGEILIDGKDIAKLPLEEL----RRRIGYV-PQLSGGQRQRVALARAL 95 (157)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC---CCCccEEEECCEEcccCCHHHH----HhceEEE-eeCCHHHHHHHHHHHHH
Confidence 34799999999999999999998732 223444444321111 11111 1111110 01233344445577777
Q ss_pred hCCceEEEEeCCCCC-CccChHHHHHhhcCC-CCCcEEEEEcCCHHHHHHh
Q 047321 208 TGKKIFLVLDDVWDG-DYKKWDPFFSCLKNG-HHESKILITTHDRSVALQL 256 (807)
Q Consensus 208 ~~k~~LlVlDdv~~~-~~~~~~~l~~~l~~~-~~gs~IliTTR~~~v~~~~ 256 (807)
...+-++++|++... |......+...+... ..+..||++|++.......
T Consensus 96 ~~~~~i~ilDEp~~~lD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~ 146 (157)
T cd00267 96 LLNPDLLLLDEPTSGLDPASRERLLELLRELAEEGRTVIIVTHDPELAELA 146 (157)
T ss_pred hcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHh
Confidence 788999999999754 444455555555432 2256799999998877654
No 179
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=97.57 E-value=0.00017 Score=72.09 Aligned_cols=61 Identities=25% Similarity=0.274 Sum_probs=41.5
Q ss_pred HHHHHHHHHHHhCCceEEEEeCCCCC-CccChHHHHHhhcCC-CCCcEEEEEcCCHHHHHHhC
Q 047321 197 ESLMKQIQEYITGKKIFLVLDDVWDG-DYKKWDPFFSCLKNG-HHESKILITTHDRSVALQLG 257 (807)
Q Consensus 197 ~~~~~~l~~~l~~k~~LlVlDdv~~~-~~~~~~~l~~~l~~~-~~gs~IliTTR~~~v~~~~~ 257 (807)
+...-.+.+.+..++-+++||++.+. |....+.+...+... ..|..||++|++...+..+.
T Consensus 139 ~~qrv~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tvi~~sH~~~~~~~~~ 201 (211)
T cd03225 139 QKQRVAIAGVLAMDPDILLLDEPTAGLDPAGRRELLELLKKLKAEGKTIIIVTHDLDLLLELA 201 (211)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhC
Confidence 33444567777788889999999765 555555566655433 23678999999987665543
No 180
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=97.57 E-value=0.00082 Score=67.66 Aligned_cols=57 Identities=16% Similarity=0.159 Sum_probs=40.0
Q ss_pred HHHHHHHHHHhCCceEEEEeCCCCC-CccChHHHHHhhcCCCCCcEEEEEcCCHHHHH
Q 047321 198 SLMKQIQEYITGKKIFLVLDDVWDG-DYKKWDPFFSCLKNGHHESKILITTHDRSVAL 254 (807)
Q Consensus 198 ~~~~~l~~~l~~k~~LlVlDdv~~~-~~~~~~~l~~~l~~~~~gs~IliTTR~~~v~~ 254 (807)
...-.+.+.+..++-++++|++... |......+...+.....+..||++|++.+...
T Consensus 146 ~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~ 203 (220)
T cd03245 146 RQAVALARALLNDPPILLLDEPTSAMDMNSEERLKERLRQLLGDKTLIIITHRPSLLD 203 (220)
T ss_pred HHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHH
Confidence 3344466677788889999999665 55555666666655433467999999988753
No 181
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.57 E-value=0.00076 Score=67.50 Aligned_cols=60 Identities=22% Similarity=0.230 Sum_probs=40.9
Q ss_pred HHHHHHHHHHHhCCceEEEEeCCCCC-CccChHHHHHhhcCC--CCCcEEEEEcCCHHHHHHh
Q 047321 197 ESLMKQIQEYITGKKIFLVLDDVWDG-DYKKWDPFFSCLKNG--HHESKILITTHDRSVALQL 256 (807)
Q Consensus 197 ~~~~~~l~~~l~~k~~LlVlDdv~~~-~~~~~~~l~~~l~~~--~~gs~IliTTR~~~v~~~~ 256 (807)
+...-.+.+.+..++-+++||++... |......+...+... ..|..||++|++......+
T Consensus 135 ~~qrl~la~al~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~ 197 (213)
T cd03259 135 QQQRVALARALAREPSLLLLDEPLSALDAKLREELREELKELQRELGITTIYVTHDQEEALAL 197 (213)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHh
Confidence 33344567777888999999999765 444555566666543 2367899999998765443
No 182
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=97.56 E-value=7.6e-06 Score=84.95 Aligned_cols=122 Identities=18% Similarity=0.241 Sum_probs=76.7
Q ss_pred cCcccccccccCCCccccchhhhccccCCCCCCcccEEEEccCCCCCC--CcccccCCCCccEEeeccCcccccccc-cc
Q 047321 675 AFPKLKSLEIDGMKELEEWNYRITRKENISIMPRLSSLQIMNCRKLKA--LPDYLLQTIALQKLSIYSCDLLEELPI-LE 751 (807)
Q Consensus 675 ~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~--lp~~l~~l~~L~~L~l~~c~~l~~lP~-~~ 751 (807)
+.++|+.|.+..|..+..... .....+.+.|+.|++..|-.... +-.--.+++.|+.|.+++|..+.+--. .-
T Consensus 318 ~~~~L~~l~l~~c~~fsd~~f----t~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l 393 (483)
T KOG4341|consen 318 HCHNLQVLELSGCQQFSDRGF----TMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHL 393 (483)
T ss_pred CCCceEEEeccccchhhhhhh----hhhhcCChhhhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhh
Confidence 557777777777766554333 11123567777777777733221 222224678899999998887655310 00
Q ss_pred cccCCCCCCCCeeeeccCCCcccC-CccCCCCCcccccccccchhhhhhh
Q 047321 752 DRRTTDIPRLSSLAIWYCPKLKVL-PDYLLRTTTLQAGEQDYENEKFSQR 800 (807)
Q Consensus 752 ~~~~~~l~~L~~L~i~~c~~l~~l-P~~l~~l~~L~~L~l~~~~~~~~~~ 800 (807)
...-+.+..|..+.+.+||.++.- -+.+.++++|+.+++..|+--+.-+
T Consensus 394 ~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~vtk~~ 443 (483)
T KOG4341|consen 394 SSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQDVTKEA 443 (483)
T ss_pred hhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechhhhhhhh
Confidence 022346677888999999987643 2567788899999998887654433
No 183
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.56 E-value=0.00099 Score=66.51 Aligned_cols=56 Identities=16% Similarity=0.284 Sum_probs=38.3
Q ss_pred HHHHHHHhCCceEEEEeCCCCC-CccChHHHHHhhcCC-CCCcEEEEEcCCHHHHHHh
Q 047321 201 KQIQEYITGKKIFLVLDDVWDG-DYKKWDPFFSCLKNG-HHESKILITTHDRSVALQL 256 (807)
Q Consensus 201 ~~l~~~l~~k~~LlVlDdv~~~-~~~~~~~l~~~l~~~-~~gs~IliTTR~~~v~~~~ 256 (807)
-.+.+.+..++-++++|++.+. |....+.+...+... ..|..||++|++......+
T Consensus 137 l~la~al~~~p~~lllDEP~~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~~~~~~ 194 (210)
T cd03269 137 VQFIAAVIHDPELLILDEPFSGLDPVNVELLKDVIRELARAGKTVILSTHQMELVEEL 194 (210)
T ss_pred HHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHh
Confidence 3466777778889999999765 444445555555432 3467899999998766543
No 184
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=97.56 E-value=0.0013 Score=65.44 Aligned_cols=60 Identities=17% Similarity=0.190 Sum_probs=41.9
Q ss_pred HHHHHHHHHHHHhCCceEEEEeCCCCC-CccChHHHHHhhcCCCCCcEEEEEcCCHHHHHH
Q 047321 196 FESLMKQIQEYITGKKIFLVLDDVWDG-DYKKWDPFFSCLKNGHHESKILITTHDRSVALQ 255 (807)
Q Consensus 196 ~~~~~~~l~~~l~~k~~LlVlDdv~~~-~~~~~~~l~~~l~~~~~gs~IliTTR~~~v~~~ 255 (807)
.+...-.+.+.+..++-++++|++... |....+.+...+.....|..||++|++......
T Consensus 129 G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~th~~~~~~~ 189 (207)
T cd03369 129 GQRQLLCLARALLKRPRVLVLDEATASIDYATDALIQKTIREEFTNSTILTIAHRLRTIID 189 (207)
T ss_pred HHHHHHHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHhh
Confidence 334444567777788899999999765 555555566666554457789999999877644
No 185
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=97.56 E-value=0.00053 Score=67.81 Aligned_cols=123 Identities=20% Similarity=0.160 Sum_probs=70.1
Q ss_pred CceEEEEEccCCChHHHHHHHHHcCc--cc-cc--ccc--------------e-EEEEEeCCCCCHHHHHHHHHHHcCCC
Q 047321 130 GLDVISLVGLGGIGKTTLAQLAYNND--EV-KR--NFE--------------K-VIWVCVSNTFEEISVAKAIIEGLGVS 189 (807)
Q Consensus 130 ~~~vi~I~G~gGiGKTtLa~~v~~~~--~~-~~--~f~--------------~-~~wv~~~~~~~~~~~~~~i~~~l~~~ 189 (807)
.-.+++|+|.+|+|||||++.+.... .. .+ .|+ . +.++.-...........+++...
T Consensus 25 ~Ge~~~i~G~nGsGKStLl~~l~G~~~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~l~~~--- 101 (200)
T cd03217 25 KGEVHALMGPNGSGKSTLAKTIMGHPKYEVTEGEILFKGEDITDLPPEERARLGIFLAFQYPPEIPGVKNADFLRYV--- 101 (200)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCcCCCCccEEEECCEECCcCCHHHHhhCcEEEeecChhhccCccHHHHHhhc---
Confidence 45799999999999999999988741 10 00 000 0 11211110000001111222111
Q ss_pred CCCCccHHHHHHHHHHHHhCCceEEEEeCCCCC-CccChHHHHHhhcCC-CCCcEEEEEcCCHHHHHH
Q 047321 190 AFGLSEFESLMKQIQEYITGKKIFLVLDDVWDG-DYKKWDPFFSCLKNG-HHESKILITTHDRSVALQ 255 (807)
Q Consensus 190 ~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~-~~~~~~~l~~~l~~~-~~gs~IliTTR~~~v~~~ 255 (807)
.......+...-.+.+.+..++-++++|++... |....+.+...+... ..|..||++|++.+.+..
T Consensus 102 ~~~LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~L~~~~~~~~tiii~sh~~~~~~~ 169 (200)
T cd03217 102 NEGFSGGEKKRNEILQLLLLEPDLAILDEPDSGLDIDALRLVAEVINKLREEGKSVLIITHYQRLLDY 169 (200)
T ss_pred cccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHH
Confidence 112333444455577888889999999999664 444455555555443 236789999999887764
No 186
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.56 E-value=0.0011 Score=65.53 Aligned_cols=127 Identities=24% Similarity=0.338 Sum_probs=76.3
Q ss_pred CceEEEEEccCCChHHHHHHHHHcCc------------ccc----------cccceEEEEEeCCCC------------CH
Q 047321 130 GLDVISLVGLGGIGKTTLAQLAYNND------------EVK----------RNFEKVIWVCVSNTF------------EE 175 (807)
Q Consensus 130 ~~~vi~I~G~gGiGKTtLa~~v~~~~------------~~~----------~~f~~~~wv~~~~~~------------~~ 175 (807)
.-.+|+|+|++|+|||||.+.++.=. .+. +.+..--|.++-++. ..
T Consensus 28 ~GEfvsilGpSGcGKSTLLriiAGL~~p~~G~V~~~g~~v~~p~~~~~~vFQ~~~LlPW~Tv~~NV~l~l~~~~~~~~e~ 107 (248)
T COG1116 28 KGEFVAILGPSGCGKSTLLRLIAGLEKPTSGEVLLDGRPVTGPGPDIGYVFQEDALLPWLTVLDNVALGLELRGKSKAEA 107 (248)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCcccCCCCCCEEEEeccCcccchhhHHhhheehhhccccchHhH
Confidence 55799999999999999999986411 111 111222354433321 12
Q ss_pred HHHHHHHHHHcCCCCCC------CccHHHHHHHHHHHHhCCceEEEEeCCCCC-Ccc----ChHHHHHhhcCCCCCcEEE
Q 047321 176 ISVAKAIIEGLGVSAFG------LSEFESLMKQIQEYITGKKIFLVLDDVWDG-DYK----KWDPFFSCLKNGHHESKIL 244 (807)
Q Consensus 176 ~~~~~~i~~~l~~~~~~------~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~-~~~----~~~~l~~~l~~~~~gs~Il 244 (807)
.+...++++.++..... ..........+.+.+..++-+|.+|+.... |.. ..+.+...+ ...+..|+
T Consensus 108 ~~~a~~~L~~VgL~~~~~~~P~qLSGGMrQRVaiARAL~~~P~lLLlDEPFgALDalTR~~lq~~l~~lw--~~~~~Tvl 185 (248)
T COG1116 108 RERAKELLELVGLAGFEDKYPHQLSGGMRQRVAIARALATRPKLLLLDEPFGALDALTREELQDELLRLW--EETRKTVL 185 (248)
T ss_pred HHHHHHHHHHcCCcchhhcCccccChHHHHHHHHHHHHhcCCCEEEEcCCcchhhHHHHHHHHHHHHHHH--HhhCCEEE
Confidence 33566667777664322 233334455688889999999999998654 211 112222222 23456799
Q ss_pred EEcCCHHHHHHhCC
Q 047321 245 ITTHDRSVALQLGS 258 (807)
Q Consensus 245 iTTR~~~v~~~~~~ 258 (807)
+.|++-+-|-.++.
T Consensus 186 lVTHdi~EAv~Lsd 199 (248)
T COG1116 186 LVTHDVDEAVYLAD 199 (248)
T ss_pred EEeCCHHHHHhhhC
Confidence 99999877766543
No 187
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=97.55 E-value=0.00076 Score=69.46 Aligned_cols=59 Identities=19% Similarity=0.236 Sum_probs=40.7
Q ss_pred HHHHHHHHHhCCceEEEEeCCCCC-CccChHHHHHhhcCC--CCCcEEEEEcCCHHHHHHhC
Q 047321 199 LMKQIQEYITGKKIFLVLDDVWDG-DYKKWDPFFSCLKNG--HHESKILITTHDRSVALQLG 257 (807)
Q Consensus 199 ~~~~l~~~l~~k~~LlVlDdv~~~-~~~~~~~l~~~l~~~--~~gs~IliTTR~~~v~~~~~ 257 (807)
..-.+.+.+..++-+++||++... |......+...+... ..|..||++|++.+.+..+.
T Consensus 135 qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~g~tviivsH~~~~~~~~~ 196 (255)
T PRK11248 135 QRVGIARALAANPQLLLLDEPFGALDAFTREQMQTLLLKLWQETGKQVLLITHDIEEAVFMA 196 (255)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhC
Confidence 344466777788999999999765 444555565655542 23677999999988765544
No 188
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.55 E-value=0.00076 Score=67.39 Aligned_cols=61 Identities=18% Similarity=0.171 Sum_probs=41.3
Q ss_pred HHHHHHHHHHHhCCceEEEEeCCCCC-CccChHHHHHhhcCCCCCcEEEEEcCCHHHHHHhC
Q 047321 197 ESLMKQIQEYITGKKIFLVLDDVWDG-DYKKWDPFFSCLKNGHHESKILITTHDRSVALQLG 257 (807)
Q Consensus 197 ~~~~~~l~~~l~~k~~LlVlDdv~~~-~~~~~~~l~~~l~~~~~gs~IliTTR~~~v~~~~~ 257 (807)
+...-.+.+.+..++-++++|++... |....+.+...+.....+..||++|++......+.
T Consensus 135 ~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~vsH~~~~~~~~~ 196 (211)
T cd03264 135 MRRRVGIAQALVGDPSILIVDEPTAGLDPEERIRFRNLLSELGEDRIVILSTHIVEDVESLC 196 (211)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHHhC
Confidence 33344567777889999999999765 44445556566554433467999999988765443
No 189
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=97.54 E-value=0.00011 Score=57.02 Aligned_cols=60 Identities=22% Similarity=0.314 Sum_probs=41.1
Q ss_pred CCccEEeeccCcccccccccccccCCCCCCCCeeeeccCCCcccCC-ccCCCCCcccccccccchh
Q 047321 731 IALQKLSIYSCDLLEELPILEDRRTTDIPRLSSLAIWYCPKLKVLP-DYLLRTTTLQAGEQDYENE 795 (807)
Q Consensus 731 ~~L~~L~l~~c~~l~~lP~~~~~~~~~l~~L~~L~i~~c~~l~~lP-~~l~~l~~L~~L~l~~~~~ 795 (807)
|+|++|++++| .+..+|. ..+..+++|++|++++ +.++.+| ..+.++++|+.|++++|++
T Consensus 1 p~L~~L~l~~n-~l~~i~~---~~f~~l~~L~~L~l~~-N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNN-KLTEIPP---DSFSNLPNLETLDLSN-NNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSS-TESEECT---TTTTTGTTESEEEETS-SSESEEETTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCC-CCCccCH---HHHcCCCCCCEeEccC-CccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 46777777775 6677661 3556777777777774 4566665 5667777777777777763
No 190
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=97.54 E-value=0.00071 Score=67.34 Aligned_cols=136 Identities=15% Similarity=0.139 Sum_probs=75.9
Q ss_pred CceEEEEEccCCChHHHHHHHHHcCcccc-c--ccc-----------eEEEEEeCC----CCCHHHH-------------
Q 047321 130 GLDVISLVGLGGIGKTTLAQLAYNNDEVK-R--NFE-----------KVIWVCVSN----TFEEISV------------- 178 (807)
Q Consensus 130 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~-~--~f~-----------~~~wv~~~~----~~~~~~~------------- 178 (807)
.-.+++|+|++|+|||||++.+..-.... + .|+ .+.|+.-.. ..++.+-
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~tv~~~l~~~~~~~~~~~~ 106 (207)
T PRK13539 27 AGEALVLTGPNGSGKTTLLRLIAGLLPPAAGTIKLDGGDIDDPDVAEACHYLGHRNAMKPALTVAENLEFWAAFLGGEEL 106 (207)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEeCcchhhHhhcEEecCCCcCCCCCcHHHHHHHHHHhcCCcHH
Confidence 45799999999999999999987532110 0 010 122221111 1111111
Q ss_pred -HHHHHHHcCCCC------CCCccHHHHHHHHHHHHhCCceEEEEeCCCCC-CccChHHHHHhhcCC-CCCcEEEEEcCC
Q 047321 179 -AKAIIEGLGVSA------FGLSEFESLMKQIQEYITGKKIFLVLDDVWDG-DYKKWDPFFSCLKNG-HHESKILITTHD 249 (807)
Q Consensus 179 -~~~i~~~l~~~~------~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~-~~~~~~~l~~~l~~~-~~gs~IliTTR~ 249 (807)
..++++.++... ......+...-.+.+.+..++-++++|++... |......+...+... ..|..||++|++
T Consensus 107 ~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~ 186 (207)
T PRK13539 107 DIAAALEAVGLAPLAHLPFGYLSAGQKRRVALARLLVSNRPIWILDEPTAALDAAAVALFAELIRAHLAQGGIVIAATHI 186 (207)
T ss_pred HHHHHHHHcCCHHHHcCChhhcCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCC
Confidence 122333333221 01122233334466777788999999999765 555555566666532 346789999999
Q ss_pred HHHHHHhCCCceEeCCCCC
Q 047321 250 RSVALQLGSIDIIPVKELG 268 (807)
Q Consensus 250 ~~v~~~~~~~~~~~l~~L~ 268 (807)
...... ..++.++...
T Consensus 187 ~~~~~~---~~~~~~~~~~ 202 (207)
T PRK13539 187 PLGLPG---ARELDLGPFA 202 (207)
T ss_pred chhhcc---CcEEeecCcc
Confidence 776543 4566665533
No 191
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.54 E-value=0.0006 Score=65.09 Aligned_cols=60 Identities=17% Similarity=0.092 Sum_probs=38.5
Q ss_pred HHHHHHHHHhCCceEEEEeCCCCC-CccChHHHHHhhcCCCCCcEEEEEcCCHHHHHHhCC
Q 047321 199 LMKQIQEYITGKKIFLVLDDVWDG-DYKKWDPFFSCLKNGHHESKILITTHDRSVALQLGS 258 (807)
Q Consensus 199 ~~~~l~~~l~~k~~LlVlDdv~~~-~~~~~~~l~~~l~~~~~gs~IliTTR~~~v~~~~~~ 258 (807)
..-.+.+.+.-++-+|.+|+..+. |+-.-.++...+...+..-.|||.|++.+-|..+..
T Consensus 156 QRLcIARalAv~PeVlLmDEPtSALDPIsT~kIEeLi~eLk~~yTIviVTHnmqQAaRvSD 216 (253)
T COG1117 156 QRLCIARALAVKPEVLLMDEPTSALDPISTLKIEELITELKKKYTIVIVTHNMQQAARVSD 216 (253)
T ss_pred HHHHHHHHHhcCCcEEEecCcccccCchhHHHHHHHHHHHHhccEEEEEeCCHHHHHHHhH
Confidence 334467788889999999998654 322222333333333345579999999887766543
No 192
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=97.53 E-value=0.00021 Score=71.70 Aligned_cols=61 Identities=18% Similarity=0.172 Sum_probs=41.5
Q ss_pred HHHHHHHHHHHhCCceEEEEeCCCCC-CccChHHHHHhhcCC-CCCcEEEEEcCCHHHHHHhC
Q 047321 197 ESLMKQIQEYITGKKIFLVLDDVWDG-DYKKWDPFFSCLKNG-HHESKILITTHDRSVALQLG 257 (807)
Q Consensus 197 ~~~~~~l~~~l~~k~~LlVlDdv~~~-~~~~~~~l~~~l~~~-~~gs~IliTTR~~~v~~~~~ 257 (807)
+...-.+.+.+..++-+++||++.+. |....+.+...+... ..|..||++|++.+....+.
T Consensus 143 ~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~~~~~~~ 205 (216)
T TIGR00960 143 EQQRVAIARAIVHKPPLLLADEPTGNLDPELSRDIMRLFEEFNRRGTTVLVATHDINLVETYR 205 (216)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhC
Confidence 33444577778888999999999765 444455555555432 24667999999987665443
No 193
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=97.53 E-value=0.00062 Score=69.53 Aligned_cols=129 Identities=19% Similarity=0.131 Sum_probs=73.4
Q ss_pred CceEEEEEccCCChHHHHHHHHHcCcccc-c--ccc--eEEEEEeC----CCCCHHHHH--------------HHHHHHc
Q 047321 130 GLDVISLVGLGGIGKTTLAQLAYNNDEVK-R--NFE--KVIWVCVS----NTFEEISVA--------------KAIIEGL 186 (807)
Q Consensus 130 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~-~--~f~--~~~wv~~~----~~~~~~~~~--------------~~i~~~l 186 (807)
.-.+++|+|++|+|||||++.+....... + .++ .+.++.-. ...++.+.+ .++++.+
T Consensus 24 ~Ge~~~i~G~NGsGKSTLlk~L~G~~~p~~G~i~~~g~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~l 103 (246)
T cd03237 24 ESEVIGILGPNGIGKTTFIKMLAGVLKPDEGDIEIELDTVSYKPQYIKADYEGTVRDLLSSITKDFYTHPYFKTEIAKPL 103 (246)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCcCCCCeEEECCceEEEecccccCCCCCCHHHHHHHHhhhccccHHHHHHHHHHc
Confidence 45799999999999999999997642211 1 111 12222111 011222221 2233333
Q ss_pred CCCC------CCCccHHHHHHHHHHHHhCCceEEEEeCCCCC-CccChHHHHHhhcCC--CCCcEEEEEcCCHHHHHHhC
Q 047321 187 GVSA------FGLSEFESLMKQIQEYITGKKIFLVLDDVWDG-DYKKWDPFFSCLKNG--HHESKILITTHDRSVALQLG 257 (807)
Q Consensus 187 ~~~~------~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~-~~~~~~~l~~~l~~~--~~gs~IliTTR~~~v~~~~~ 257 (807)
+... ......+...-.+.+.+..++-+++||++... |......+...+... ..|..||++|++...+..+.
T Consensus 104 ~l~~~~~~~~~~LSgGe~qrv~iaraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiivsHd~~~~~~~~ 183 (246)
T cd03237 104 QIEQILDREVPELSGGELQRVAIAACLSKDADIYLLDEPSAYLDVEQRLMASKVIRRFAENNEKTAFVVEHDIIMIDYLA 183 (246)
T ss_pred CCHHHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhC
Confidence 3221 11122333344577788889999999999664 444444555555443 23677999999987766544
Q ss_pred C
Q 047321 258 S 258 (807)
Q Consensus 258 ~ 258 (807)
.
T Consensus 184 d 184 (246)
T cd03237 184 D 184 (246)
T ss_pred C
Confidence 3
No 194
>PRK10865 protein disaggregation chaperone; Provisional
Probab=97.53 E-value=0.0012 Score=79.27 Aligned_cols=43 Identities=26% Similarity=0.279 Sum_probs=37.0
Q ss_pred ccccccchHHHHHHHHhCCCCCCCCCceEEEEEccCCChHHHHHHHHHc
Q 047321 105 GVCGRVDEKNELLSKLLCGSSEQQKGLDVISLVGLGGIGKTTLAQLAYN 153 (807)
Q Consensus 105 ~~vGR~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 153 (807)
.++||+.+++++++.|... ...-+.++|++|+|||++|+.+..
T Consensus 179 ~vigr~~ei~~~i~iL~r~------~~~n~lL~G~pGvGKT~l~~~la~ 221 (857)
T PRK10865 179 PVIGRDEEIRRTIQVLQRR------TKNNPVLIGEPGVGKTAIVEGLAQ 221 (857)
T ss_pred cCCCCHHHHHHHHHHHhcC------CcCceEEECCCCCCHHHHHHHHHH
Confidence 4999999999999999743 344567999999999999999876
No 195
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.53 E-value=0.00059 Score=67.00 Aligned_cols=120 Identities=23% Similarity=0.207 Sum_probs=67.5
Q ss_pred CceEEEEEccCCChHHHHHHHHHcCcc---ccc--ccc----------eEEEEEeCCC-CCHHHHHHHHHHHcCCCCCCC
Q 047321 130 GLDVISLVGLGGIGKTTLAQLAYNNDE---VKR--NFE----------KVIWVCVSNT-FEEISVAKAIIEGLGVSAFGL 193 (807)
Q Consensus 130 ~~~vi~I~G~gGiGKTtLa~~v~~~~~---~~~--~f~----------~~~wv~~~~~-~~~~~~~~~i~~~l~~~~~~~ 193 (807)
.-.+++|+|++|+|||||++.++.... ... .|+ .+.|+.-... +....+.+.+....... ..
T Consensus 32 ~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~G~i~~~g~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~--~L 109 (192)
T cd03232 32 PGTLTALMGESGAGKTTLLDVLAGRKTAGVITGEILINGRPLDKNFQRSTGYVEQQDVHSPNLTVREALRFSALLR--GL 109 (192)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEEECCEehHHHhhhceEEecccCccccCCcHHHHHHHHHHHh--cC
Confidence 457999999999999999999985311 111 011 1222221111 11112222221110000 23
Q ss_pred ccHHHHHHHHHHHHhCCceEEEEeCCCCC-CccChHHHHHhhcCC-CCCcEEEEEcCCHH
Q 047321 194 SEFESLMKQIQEYITGKKIFLVLDDVWDG-DYKKWDPFFSCLKNG-HHESKILITTHDRS 251 (807)
Q Consensus 194 ~~~~~~~~~l~~~l~~k~~LlVlDdv~~~-~~~~~~~l~~~l~~~-~~gs~IliTTR~~~ 251 (807)
...+...-.+.+.+..++-++++|++... |......+...+... ..|..||++|++.+
T Consensus 110 SgGe~qrv~la~al~~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiiivtH~~~ 169 (192)
T cd03232 110 SVEQRKRLTIGVELAAKPSILFLDEPTSGLDSQAAYNIVRFLKKLADSGQAILCTIHQPS 169 (192)
T ss_pred CHHHhHHHHHHHHHhcCCcEEEEeCCCcCCCHHHHHHHHHHHHHHHHcCCEEEEEEcCCh
Confidence 33344455577778888899999998664 444455555555432 24678999999875
No 196
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=97.53 E-value=0.00022 Score=71.69 Aligned_cols=56 Identities=16% Similarity=0.199 Sum_probs=39.4
Q ss_pred HHHHHHHHHhCCceEEEEeCCCCC-CccChHHHHHhhcCCC--CCcEEEEEcCCHHHHH
Q 047321 199 LMKQIQEYITGKKIFLVLDDVWDG-DYKKWDPFFSCLKNGH--HESKILITTHDRSVAL 254 (807)
Q Consensus 199 ~~~~l~~~l~~k~~LlVlDdv~~~-~~~~~~~l~~~l~~~~--~gs~IliTTR~~~v~~ 254 (807)
..-.+.+.+..++-+++||++... |....+.+...+.... .|..||++|++.+...
T Consensus 147 qrv~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~ 205 (218)
T cd03255 147 QRVAIARALANDPKIILADEPTGNLDSETGKEVMELLRELNKEAGTTIVVVTHDPELAE 205 (218)
T ss_pred HHHHHHHHHccCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEECCHHHHh
Confidence 344467777888999999999765 4445555666655432 3678999999987664
No 197
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.52 E-value=0.001 Score=66.87 Aligned_cols=58 Identities=24% Similarity=0.210 Sum_probs=39.1
Q ss_pred HHHHHHHHhCCceEEEEeCCCCC-CccChHHHHHhhcCC-C-CCcEEEEEcCCHHHHHHhC
Q 047321 200 MKQIQEYITGKKIFLVLDDVWDG-DYKKWDPFFSCLKNG-H-HESKILITTHDRSVALQLG 257 (807)
Q Consensus 200 ~~~l~~~l~~k~~LlVlDdv~~~-~~~~~~~l~~~l~~~-~-~gs~IliTTR~~~v~~~~~ 257 (807)
.-.+.+.+-.++-++++|++.+. |...-+.+...+... . .|..||++|++...+....
T Consensus 139 r~~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~tH~~~~~~~~~ 199 (220)
T cd03265 139 RLEIARSLVHRPEVLFLDEPTIGLDPQTRAHVWEYIEKLKEEFGMTILLTTHYMEEAEQLC 199 (220)
T ss_pred HHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhC
Confidence 34466777788899999999765 444444455555432 2 3667999999987765543
No 198
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=97.52 E-value=0.00021 Score=75.58 Aligned_cols=59 Identities=22% Similarity=0.208 Sum_probs=40.7
Q ss_pred HHHHHHHHHhCCceEEEEeCCCCC-CccChHHHHHhhcCC-CCCcEEEEEcCCHHHHHHhC
Q 047321 199 LMKQIQEYITGKKIFLVLDDVWDG-DYKKWDPFFSCLKNG-HHESKILITTHDRSVALQLG 257 (807)
Q Consensus 199 ~~~~l~~~l~~k~~LlVlDdv~~~-~~~~~~~l~~~l~~~-~~gs~IliTTR~~~v~~~~~ 257 (807)
..-.+.+.+-.++-+++||++... |...-..+...+... ..|..||+||++.+.+..+.
T Consensus 131 qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~tvi~~sH~~~~~~~~~ 191 (302)
T TIGR01188 131 RRLDIAASLIHQPDVLFLDEPTTGLDPRTRRAIWDYIRALKEEGVTILLTTHYMEEADKLC 191 (302)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhC
Confidence 344567778889999999999765 444444455554432 34778999999988766544
No 199
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=97.52 E-value=0.00099 Score=69.80 Aligned_cols=128 Identities=20% Similarity=0.199 Sum_probs=74.3
Q ss_pred CceEEEEEccCCChHHHHHHHHHcCcccc-c---cc------------ceEEEEEeCCC----CCHH-------------
Q 047321 130 GLDVISLVGLGGIGKTTLAQLAYNNDEVK-R---NF------------EKVIWVCVSNT----FEEI------------- 176 (807)
Q Consensus 130 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~-~---~f------------~~~~wv~~~~~----~~~~------------- 176 (807)
.-.++++.|++|+|||||.+.+..-.+.. + .+ ..+.++.-... .++.
T Consensus 30 ~Gei~gllG~NGAGKTTllk~l~gl~~p~~G~i~i~G~~~~~~~~~~~~~igy~~~~~~~~~~lT~~e~l~~~~~l~~~~ 109 (293)
T COG1131 30 PGEIFGLLGPNGAGKTTLLKILAGLLKPTSGEILVLGYDVVKEPAKVRRRIGYVPQEPSLYPELTVRENLEFFARLYGLS 109 (293)
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCCcCCCceEEEEcCEeCccCHHHHHhheEEEccCCCCCccccHHHHHHHHHHHhCCC
Confidence 45799999999999999999997532110 0 00 01222221111 1222
Q ss_pred -----HHHHHHHHHcCCCCCC------CccHHHHHHHHHHHHhCCceEEEEeCCCCC-CccChHHHHHhhcCC-CCC-cE
Q 047321 177 -----SVAKAIIEGLGVSAFG------LSEFESLMKQIQEYITGKKIFLVLDDVWDG-DYKKWDPFFSCLKNG-HHE-SK 242 (807)
Q Consensus 177 -----~~~~~i~~~l~~~~~~------~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~-~~~~~~~l~~~l~~~-~~g-s~ 242 (807)
+....+++.++..... ........-.+...+-+++-+++||+..+. |+..-..+...+... ..| ..
T Consensus 110 ~~~~~~~~~~~l~~~~L~~~~~~~~~~lS~G~kqrl~ia~aL~~~P~lliLDEPt~GLDp~~~~~~~~~l~~l~~~g~~t 189 (293)
T COG1131 110 KEEAEERIEELLELFGLEDKANKKVRTLSGGMKQRLSIALALLHDPELLILDEPTSGLDPESRREIWELLRELAKEGGVT 189 (293)
T ss_pred hhHHHHHHHHHHHHcCCchhhCcchhhcCHHHHHHHHHHHHHhcCCCEEEECCCCcCCCHHHHHHHHHHHHHHHhCCCcE
Confidence 2333455555544311 111222233466778889999999999775 544444555555433 223 67
Q ss_pred EEEEcCCHHHHHHhC
Q 047321 243 ILITTHDRSVALQLG 257 (807)
Q Consensus 243 IliTTR~~~v~~~~~ 257 (807)
|++||+..+.+..+.
T Consensus 190 vlissH~l~e~~~~~ 204 (293)
T COG1131 190 ILLSTHILEEAEELC 204 (293)
T ss_pred EEEeCCcHHHHHHhC
Confidence 999999987776653
No 200
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=97.51 E-value=0.00099 Score=66.14 Aligned_cols=61 Identities=11% Similarity=0.111 Sum_probs=41.0
Q ss_pred HHHHHHHHHHhCCceEEEEeCCCCC-CccChHHHHHhhcCC-CCCcEEEEEcCCHHHHHHhCC
Q 047321 198 SLMKQIQEYITGKKIFLVLDDVWDG-DYKKWDPFFSCLKNG-HHESKILITTHDRSVALQLGS 258 (807)
Q Consensus 198 ~~~~~l~~~l~~k~~LlVlDdv~~~-~~~~~~~l~~~l~~~-~~gs~IliTTR~~~v~~~~~~ 258 (807)
...-.+.+.+-.++-++++|+.... |....+.+...+... ..|..||++|++......++.
T Consensus 135 ~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~i~~~~~ 197 (204)
T PRK13538 135 QRRVALARLWLTRAPLWILDEPFTAIDKQGVARLEALLAQHAEQGGMVILTTHQDLPVASDKV 197 (204)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEecChhhhccCCc
Confidence 3344466777788899999999765 555555566655432 345679999998876655443
No 201
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.50 E-value=0.001 Score=66.68 Aligned_cols=61 Identities=21% Similarity=0.196 Sum_probs=40.8
Q ss_pred HHHHHHHHHHHHhCCceEEEEeCCCCC-CccChHHHHHhhcCC--CCCcEEEEEcCCHHHHHHh
Q 047321 196 FESLMKQIQEYITGKKIFLVLDDVWDG-DYKKWDPFFSCLKNG--HHESKILITTHDRSVALQL 256 (807)
Q Consensus 196 ~~~~~~~l~~~l~~k~~LlVlDdv~~~-~~~~~~~l~~~l~~~--~~gs~IliTTR~~~v~~~~ 256 (807)
.+...-.+.+.+..++-+++||++... |....+.+...+... ..|..||++|++.+.....
T Consensus 135 G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~ 198 (214)
T cd03297 135 GEKQRVALARALAAQPELLLLDEPFSALDRALRLQLLPELKQIKKNLNIPVIFVTHDLSEAEYL 198 (214)
T ss_pred HHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEecCHHHHHHh
Confidence 333444567778888999999999665 444445555555443 2367799999998765543
No 202
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=97.50 E-value=0.0012 Score=69.75 Aligned_cols=58 Identities=17% Similarity=0.188 Sum_probs=40.7
Q ss_pred HHHHHHHHhCCceEEEEeCCCCC-CccChHHHHHhhcCCCCCcEEEEEcCCHHHHHHhC
Q 047321 200 MKQIQEYITGKKIFLVLDDVWDG-DYKKWDPFFSCLKNGHHESKILITTHDRSVALQLG 257 (807)
Q Consensus 200 ~~~l~~~l~~k~~LlVlDdv~~~-~~~~~~~l~~~l~~~~~gs~IliTTR~~~v~~~~~ 257 (807)
.-.+.+.+-+++-+++||++.+. |....+.+...+.....+..||+||++.+.+..++
T Consensus 141 rv~la~al~~~p~lliLDEPt~gLD~~~~~~l~~~l~~~~~~~tiii~sH~l~~~~~~~ 199 (301)
T TIGR03522 141 RVGLAQALIHDPKVLILDEPTTGLDPNQLVEIRNVIKNIGKDKTIILSTHIMQEVEAIC 199 (301)
T ss_pred HHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHhcCCCEEEEEcCCHHHHHHhC
Confidence 34467778889999999999765 54445555555554444678999999987655543
No 203
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=97.50 E-value=0.0012 Score=68.05 Aligned_cols=128 Identities=19% Similarity=0.195 Sum_probs=72.9
Q ss_pred CceEEEEEccCCChHHHHHHHHHcCccc-cc--ccc---------eEEEEEeCCC----CCHH------------HHHHH
Q 047321 130 GLDVISLVGLGGIGKTTLAQLAYNNDEV-KR--NFE---------KVIWVCVSNT----FEEI------------SVAKA 181 (807)
Q Consensus 130 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~-~~--~f~---------~~~wv~~~~~----~~~~------------~~~~~ 181 (807)
.-.+++|+|++|+|||||++.+..-... .+ .|+ .+.|+.-... .++. ....+
T Consensus 37 ~Ge~~~I~G~NGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~ 116 (257)
T PRK11247 37 AGQFVAVVGRSGCGKSTLLRLLAGLETPSAGELLAGTAPLAEAREDTRLMFQDARLLPWKKVIDNVGLGLKGQWRDAALQ 116 (257)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEHHHhhCceEEEecCccCCCCCcHHHHHHhcccchHHHHHHH
Confidence 4569999999999999999999753211 00 011 1223321111 1111 12233
Q ss_pred HHHHcCCCC------CCCccHHHHHHHHHHHHhCCceEEEEeCCCCC-CccChHHHHHhhcCC--CCCcEEEEEcCCHHH
Q 047321 182 IIEGLGVSA------FGLSEFESLMKQIQEYITGKKIFLVLDDVWDG-DYKKWDPFFSCLKNG--HHESKILITTHDRSV 252 (807)
Q Consensus 182 i~~~l~~~~------~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~-~~~~~~~l~~~l~~~--~~gs~IliTTR~~~v 252 (807)
+++.++... ......+...-.+.+.+..++-+++||++.+. |......+...+... ..|..||++|++...
T Consensus 117 ~l~~~gl~~~~~~~~~~LSgGqkqrl~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tviivsHd~~~ 196 (257)
T PRK11247 117 ALAAVGLADRANEWPAALSGGQKQRVALARALIHRPGLLLLDEPLGALDALTRIEMQDLIESLWQQHGFTVLLVTHDVSE 196 (257)
T ss_pred HHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHH
Confidence 444444321 11223333444567777788899999999765 444445555555432 236679999999876
Q ss_pred HHHhC
Q 047321 253 ALQLG 257 (807)
Q Consensus 253 ~~~~~ 257 (807)
...+.
T Consensus 197 ~~~~~ 201 (257)
T PRK11247 197 AVAMA 201 (257)
T ss_pred HHHhC
Confidence 55443
No 204
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=97.50 E-value=0.00089 Score=68.67 Aligned_cols=128 Identities=16% Similarity=0.185 Sum_probs=71.4
Q ss_pred CceEEEEEccCCChHHHHHHHHHcCcccc-c--ccc---eEEEEEeCCCC------CHH-----------HHHHHHHHHc
Q 047321 130 GLDVISLVGLGGIGKTTLAQLAYNNDEVK-R--NFE---KVIWVCVSNTF------EEI-----------SVAKAIIEGL 186 (807)
Q Consensus 130 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~-~--~f~---~~~wv~~~~~~------~~~-----------~~~~~i~~~l 186 (807)
.-.+++|+|++|+|||||++.++.-.... + .++ .+.++.-...+ +.. +-...+++.+
T Consensus 29 ~Ge~~~I~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~~~~~i~~v~q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~ 108 (251)
T PRK09544 29 PGKILTLLGPNGAGKSTLVRVVLGLVAPDEGVIKRNGKLRIGYVPQKLYLDTTLPLTVNRFLRLRPGTKKEDILPALKRV 108 (251)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCccCEEEeccccccccccChhHHHHHhccccccHHHHHHHHHHc
Confidence 45689999999999999999998632111 1 011 12222111000 111 1122334444
Q ss_pred CCCC------CCCccHHHHHHHHHHHHhCCceEEEEeCCCCC-CccChHHHHHhhcCC--CCCcEEEEEcCCHHHHHHhC
Q 047321 187 GVSA------FGLSEFESLMKQIQEYITGKKIFLVLDDVWDG-DYKKWDPFFSCLKNG--HHESKILITTHDRSVALQLG 257 (807)
Q Consensus 187 ~~~~------~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~-~~~~~~~l~~~l~~~--~~gs~IliTTR~~~v~~~~~ 257 (807)
+... ......+...-.+.+.+..++-++++|++.+. |......+...+... ..|..||++|++.+.+....
T Consensus 109 gl~~~~~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~g~tiiivsH~~~~i~~~~ 188 (251)
T PRK09544 109 QAGHLIDAPMQKLSGGETQRVLLARALLNRPQLLVLDEPTQGVDVNGQVALYDLIDQLRRELDCAVLMVSHDLHLVMAKT 188 (251)
T ss_pred CChHHHhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhC
Confidence 3321 11122333344567777788899999999765 444444555555432 22667999999988765543
No 205
>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit. This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.
Probab=97.50 E-value=0.00092 Score=67.36 Aligned_cols=59 Identities=20% Similarity=0.244 Sum_probs=41.0
Q ss_pred HHHHHHHHHhCCceEEEEeCCCCC-CccChHHHHHhhcCC-CCCcEEEEEcCCHHHHHHhC
Q 047321 199 LMKQIQEYITGKKIFLVLDDVWDG-DYKKWDPFFSCLKNG-HHESKILITTHDRSVALQLG 257 (807)
Q Consensus 199 ~~~~l~~~l~~k~~LlVlDdv~~~-~~~~~~~l~~~l~~~-~~gs~IliTTR~~~v~~~~~ 257 (807)
..-.+.+.+..++-++++|++... |......+...+... ..|..||++|++.+....+.
T Consensus 120 qrv~laral~~~p~llilDEP~~~LD~~~~~~l~~~l~~~~~~~~tvii~sH~~~~~~~~~ 180 (223)
T TIGR03771 120 QRVLVARALATRPSVLLLDEPFTGLDMPTQELLTELFIELAGAGTAILMTTHDLAQAMATC 180 (223)
T ss_pred HHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhC
Confidence 344577778889999999999665 455555566665543 24778999999987655443
No 206
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=97.50 E-value=0.00085 Score=68.33 Aligned_cols=63 Identities=14% Similarity=0.129 Sum_probs=43.1
Q ss_pred HHHHHHHHhCCceEEEEeCCCCC-CccChHHHHHhhcCC--CCCcEEEEEcCCHHHHHHhCCCceEeC
Q 047321 200 MKQIQEYITGKKIFLVLDDVWDG-DYKKWDPFFSCLKNG--HHESKILITTHDRSVALQLGSIDIIPV 264 (807)
Q Consensus 200 ~~~l~~~l~~k~~LlVlDdv~~~-~~~~~~~l~~~l~~~--~~gs~IliTTR~~~v~~~~~~~~~~~l 264 (807)
.-.+.+.+..++-++++|++... |....+.+...+... ..|..||++|++.+.+.. ..+++.+
T Consensus 140 rl~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~--~d~i~~l 205 (236)
T TIGR03864 140 RVEIARALLHRPALLLLDEPTVGLDPASRAAIVAHVRALCRDQGLSVLWATHLVDEIEA--DDRLVVL 205 (236)
T ss_pred HHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecChhhHhh--CCEEEEE
Confidence 34567777888999999999765 555555566666543 246789999999877653 3344444
No 207
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=97.50 E-value=0.0012 Score=66.22 Aligned_cols=57 Identities=19% Similarity=0.135 Sum_probs=38.0
Q ss_pred HHHHHHHHhCCceEEEEeCCCCC-CccChHHHHHhhcCC-CCCcEEEEEcCCHHHHHHh
Q 047321 200 MKQIQEYITGKKIFLVLDDVWDG-DYKKWDPFFSCLKNG-HHESKILITTHDRSVALQL 256 (807)
Q Consensus 200 ~~~l~~~l~~k~~LlVlDdv~~~-~~~~~~~l~~~l~~~-~~gs~IliTTR~~~v~~~~ 256 (807)
.-.+.+.+-.++-+++||++... |...-+.+...+... ..|..||++|++...+..+
T Consensus 144 rv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~~ 202 (218)
T cd03266 144 KVAIARALVHDPPVLLLDEPTTGLDVMATRALREFIRQLRALGKCILFSTHIMQEVERL 202 (218)
T ss_pred HHHHHHHHhcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHh
Confidence 34466777788889999999765 444444455555432 2466799999998765543
No 208
>PRK10536 hypothetical protein; Provisional
Probab=97.50 E-value=0.00072 Score=67.75 Aligned_cols=135 Identities=13% Similarity=0.220 Sum_probs=75.6
Q ss_pred CccccccchHHHHHHHHhCCCCCCCCCceEEEEEccCCChHHHHHHHHHcCcccccccceEEEEE----eCCC--C---C
Q 047321 104 GGVCGRVDEKNELLSKLLCGSSEQQKGLDVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVC----VSNT--F---E 174 (807)
Q Consensus 104 ~~~vGR~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~----~~~~--~---~ 174 (807)
..+.+|......++.++.. ..+|.+.|++|+|||+||..+..+.-..+.|+.++-.. ..+. | +
T Consensus 55 ~~i~p~n~~Q~~~l~al~~--------~~lV~i~G~aGTGKT~La~a~a~~~l~~~~~~kIiI~RP~v~~ge~LGfLPG~ 126 (262)
T PRK10536 55 SPILARNEAQAHYLKAIES--------KQLIFATGEAGCGKTWISAAKAAEALIHKDVDRIIVTRPVLQADEDLGFLPGD 126 (262)
T ss_pred ccccCCCHHHHHHHHHHhc--------CCeEEEECCCCCCHHHHHHHHHHHHHhcCCeeEEEEeCCCCCchhhhCcCCCC
Confidence 4577888889999998862 34999999999999999998876422233444333221 0110 0 1
Q ss_pred HHH----HHHHHHHHcCCCCCCCccHHHHHH--------HHHHHHhCCce---EEEEeCCCCCCccChHHHHHhhcCCCC
Q 047321 175 EIS----VAKAIIEGLGVSAFGLSEFESLMK--------QIQEYITGKKI---FLVLDDVWDGDYKKWDPFFSCLKNGHH 239 (807)
Q Consensus 175 ~~~----~~~~i~~~l~~~~~~~~~~~~~~~--------~l~~~l~~k~~---LlVlDdv~~~~~~~~~~l~~~l~~~~~ 239 (807)
..+ .++-+...+..- .+....+.... .=-.+++|..+ ++|+|++.+-+. ..+...+...+.
T Consensus 127 ~~eK~~p~~~pi~D~L~~~-~~~~~~~~~~~~~~~~Iei~~l~ymRGrtl~~~~vIvDEaqn~~~---~~~k~~ltR~g~ 202 (262)
T PRK10536 127 IAEKFAPYFRPVYDVLVRR-LGASFMQYCLRPEIGKVEIAPFAYMRGRTFENAVVILDEAQNVTA---AQMKMFLTRLGE 202 (262)
T ss_pred HHHHHHHHHHHHHHHHHHH-hChHHHHHHHHhccCcEEEecHHHhcCCcccCCEEEEechhcCCH---HHHHHHHhhcCC
Confidence 111 112222222110 00011111110 01235677655 999999977654 445555556678
Q ss_pred CcEEEEEcCCH
Q 047321 240 ESKILITTHDR 250 (807)
Q Consensus 240 gs~IliTTR~~ 250 (807)
+|+||+|--..
T Consensus 203 ~sk~v~~GD~~ 213 (262)
T PRK10536 203 NVTVIVNGDIT 213 (262)
T ss_pred CCEEEEeCChh
Confidence 99999986543
No 209
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=97.49 E-value=0.0001 Score=81.58 Aligned_cols=175 Identities=22% Similarity=0.328 Sum_probs=115.5
Q ss_pred cceEEEEEeeccCCCCccccCCCC-ceeEEEeCCCCCCCCCCCCccccccccCcccceeeecc-ccCCccCeeEecCccC
Q 047321 467 DKVRHLGLKFEEGASFPMSIHGLN-RLRTLLIYDQSPYNPSLSSSILPELFNKLACLRALVIR-QSLRTLEKFVVGGGVD 544 (807)
Q Consensus 467 ~~~r~L~l~~~~~~~~~~~~~~l~-~Lr~L~l~~~~~~~l~~~i~~LP~~i~~L~~L~~LdL~-~~L~~L~~l~~~~~~~ 544 (807)
..+..+.+.++.+..++.....++ +|+.|+++++ .+..+|..++.+++|+.|+++ ..+..++..
T Consensus 116 ~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N-------~i~~l~~~~~~l~~L~~L~l~~N~l~~l~~~------- 181 (394)
T COG4886 116 TNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDN-------KIESLPSPLRNLPNLKNLDLSFNDLSDLPKL------- 181 (394)
T ss_pred cceeEEecCCcccccCccccccchhhccccccccc-------chhhhhhhhhccccccccccCCchhhhhhhh-------
Confidence 568999999999988888888885 9999999998 899999889999999999997 222222211
Q ss_pred CCccccccccccccccCcccccC--CCCCCChhHHHHhhccCCCCCCeEEEEeeccCCCcchhhhhchhhHHHHHHhhcC
Q 047321 545 GSNTCRLESLKNLQLLRECGIEG--LGNVSHLDEAERLQLYNQQNLLRLRLRFGRVVDGEDEERRRKNEKDKQLLEALQP 622 (807)
Q Consensus 545 ~~~~~~i~~L~~L~~L~~L~i~~--l~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~l~p 622 (807)
...+..|+.|.+++ +..++. .+....+|++|.+..|...
T Consensus 182 ---------~~~~~~L~~L~ls~N~i~~l~~-------~~~~~~~L~~l~~~~N~~~----------------------- 222 (394)
T COG4886 182 ---------LSNLSNLNNLDLSGNKISDLPP-------EIELLSALEELDLSNNSII----------------------- 222 (394)
T ss_pred ---------hhhhhhhhheeccCCccccCch-------hhhhhhhhhhhhhcCCcce-----------------------
Confidence 11333444444443 222221 1234456888888877310
Q ss_pred CCCCCCCCCCcc-cceEeccCCcCceeeCcccCCCCCCCCCCCCCCCCCCccccCcccccccccCCCccccchhhhcccc
Q 047321 623 PLSHLPPLGKLP-LKKLELRDLESVKRVGNEFLGIEESSEDDPSSSSSSPSVIAFPKLKSLEIDGMKELEEWNYRITRKE 701 (807)
Q Consensus 623 ~~~~lp~l~~L~-L~~L~L~~~~~l~~i~~~~~~~~~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~ 701 (807)
..+..+..+. +..|.+.+.. +..++. .++.+++|+.|+++++ .+..++.
T Consensus 223 --~~~~~~~~~~~l~~l~l~~n~-~~~~~~--------------------~~~~l~~l~~L~~s~n-~i~~i~~------ 272 (394)
T COG4886 223 --ELLSSLSNLKNLSGLELSNNK-LEDLPE--------------------SIGNLSNLETLDLSNN-QISSISS------ 272 (394)
T ss_pred --ecchhhhhcccccccccCCce-eeeccc--------------------hhccccccceeccccc-ccccccc------
Confidence 2233366666 7777665432 333211 1457888999999884 5666653
Q ss_pred CCCCCCcccEEEEccCCCCCCCcc
Q 047321 702 NISIMPRLSSLQIMNCRKLKALPD 725 (807)
Q Consensus 702 ~~~~l~~L~~L~l~~c~~L~~lp~ 725 (807)
+..+.+|+.|++++......+|.
T Consensus 273 -~~~~~~l~~L~~s~n~~~~~~~~ 295 (394)
T COG4886 273 -LGSLTNLRELDLSGNSLSNALPL 295 (394)
T ss_pred -ccccCccCEEeccCccccccchh
Confidence 55789999999998855555553
No 210
>PLN03150 hypothetical protein; Provisional
Probab=97.48 E-value=8.9e-05 Score=86.34 Aligned_cols=109 Identities=15% Similarity=0.085 Sum_probs=87.1
Q ss_pred ccccccccCCCccc-cchhhhccccCCCCCCcccEEEEccCCCCCCCcccccCCCCccEEeeccCcccccccccccccCC
Q 047321 678 KLKSLEIDGMKELE-EWNYRITRKENISIMPRLSSLQIMNCRKLKALPDYLLQTIALQKLSIYSCDLLEELPILEDRRTT 756 (807)
Q Consensus 678 ~L~~L~l~~~~~l~-~~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~lp~~l~~l~~L~~L~l~~c~~l~~lP~~~~~~~~ 756 (807)
.++.|+|+++ .+. .++ ..+..+++|+.|++++|.-...+|..++.+++|+.|+|++|.....+| ..+.
T Consensus 419 ~v~~L~L~~n-~L~g~ip------~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP----~~l~ 487 (623)
T PLN03150 419 FIDGLGLDNQ-GLRGFIP------NDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIP----ESLG 487 (623)
T ss_pred EEEEEECCCC-CccccCC------HHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCc----hHHh
Confidence 5788888875 443 333 356789999999999995556899999999999999999987667888 7888
Q ss_pred CCCCCCeeeeccCCCcccCCccCCCC-Ccccccccccchhhh
Q 047321 757 DIPRLSSLAIWYCPKLKVLPDYLLRT-TTLQAGEQDYENEKF 797 (807)
Q Consensus 757 ~l~~L~~L~i~~c~~l~~lP~~l~~l-~~L~~L~l~~~~~~~ 797 (807)
.+++|+.|++++|.....+|..+..+ ..+..+++.+|+...
T Consensus 488 ~L~~L~~L~Ls~N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc 529 (623)
T PLN03150 488 QLTSLRILNLNGNSLSGRVPAALGGRLLHRASFNFTDNAGLC 529 (623)
T ss_pred cCCCCCEEECcCCcccccCChHHhhccccCceEEecCCcccc
Confidence 99999999999988778999887653 456778888776543
No 211
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=97.48 E-value=0.00081 Score=66.51 Aligned_cols=126 Identities=15% Similarity=0.106 Sum_probs=71.2
Q ss_pred CceEEEEEccCCChHHHHHHHHHcCcccc---------------ccc-ceEEEEEeC----CCCCHHH------------
Q 047321 130 GLDVISLVGLGGIGKTTLAQLAYNNDEVK---------------RNF-EKVIWVCVS----NTFEEIS------------ 177 (807)
Q Consensus 130 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~---------------~~f-~~~~wv~~~----~~~~~~~------------ 177 (807)
.-.+++|+|++|+|||||++.+....... ..+ ..+.|+.-. ...++.+
T Consensus 26 ~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~~~~~~~~~~~~ 105 (200)
T PRK13540 26 AGGLLHLKGSNGAGKTTLLKLIAGLLNPEKGEILFERQSIKKDLCTYQKQLCFVGHRSGINPYLTLRENCLYDIHFSPGA 105 (200)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCCCCeeEEECCCccccCHHHHHhheEEeccccccCcCCCHHHHHHHHHhcCcch
Confidence 45799999999999999999986532110 001 122233211 1112211
Q ss_pred -HHHHHHHHcCCCC------CCCccHHHHHHHHHHHHhCCceEEEEeCCCCC-CccChHHHHHhhcCC-CCCcEEEEEcC
Q 047321 178 -VAKAIIEGLGVSA------FGLSEFESLMKQIQEYITGKKIFLVLDDVWDG-DYKKWDPFFSCLKNG-HHESKILITTH 248 (807)
Q Consensus 178 -~~~~i~~~l~~~~------~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~-~~~~~~~l~~~l~~~-~~gs~IliTTR 248 (807)
...++++.++... ......+...-.+.+.+..++-++++|++... |...-+.+...+... ..|..||+||+
T Consensus 106 ~~~~~~l~~~~l~~~~~~~~~~LS~G~~~rv~laral~~~p~~lilDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh 185 (200)
T PRK13540 106 VGITELCRLFSLEHLIDYPCGLLSSGQKRQVALLRLWMSKAKLWLLDEPLVALDELSLLTIITKIQEHRAKGGAVLLTSH 185 (200)
T ss_pred HHHHHHHHHcCCchhhhCChhhcCHHHHHHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHcCCEEEEEeC
Confidence 1223333333221 11223333444567777888899999999665 444444555555542 34678999999
Q ss_pred CHHHHHH
Q 047321 249 DRSVALQ 255 (807)
Q Consensus 249 ~~~v~~~ 255 (807)
+......
T Consensus 186 ~~~~~~~ 192 (200)
T PRK13540 186 QDLPLNK 192 (200)
T ss_pred Cchhccc
Confidence 8766544
No 212
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=97.48 E-value=0.0012 Score=66.07 Aligned_cols=59 Identities=17% Similarity=0.164 Sum_probs=39.1
Q ss_pred HHHHHHHHHhCCceEEEEeCCCCC-CccChHHHHHhhcCC--CCCcEEEEEcCCHHHHHHhC
Q 047321 199 LMKQIQEYITGKKIFLVLDDVWDG-DYKKWDPFFSCLKNG--HHESKILITTHDRSVALQLG 257 (807)
Q Consensus 199 ~~~~l~~~l~~k~~LlVlDdv~~~-~~~~~~~l~~~l~~~--~~gs~IliTTR~~~v~~~~~ 257 (807)
..-.+.+.+-.++-+++||++... |...-..+...+... ..|..||++|++.+....+.
T Consensus 137 qr~~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~sH~~~~~~~~~ 198 (213)
T cd03301 137 QRVALGRAIVREPKVFLMDEPLSNLDAKLRVQMRAELKRLQQRLGTTTIYVTHDQVEAMTMA 198 (213)
T ss_pred HHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhc
Confidence 334467777788889999999665 444444455555432 23677999999987655443
No 213
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=97.48 E-value=0.0014 Score=66.20 Aligned_cols=58 Identities=17% Similarity=0.177 Sum_probs=40.1
Q ss_pred HHHHHHHHhCCceEEEEeCCCCC-CccChHHHHHhhcCC-CCCcEEEEEcCCHHHHHHhC
Q 047321 200 MKQIQEYITGKKIFLVLDDVWDG-DYKKWDPFFSCLKNG-HHESKILITTHDRSVALQLG 257 (807)
Q Consensus 200 ~~~l~~~l~~k~~LlVlDdv~~~-~~~~~~~l~~~l~~~-~~gs~IliTTR~~~v~~~~~ 257 (807)
.-.+.+.+-.++-++++|++... |....+.+...+... ..|..||+||++.+......
T Consensus 132 rv~laral~~~p~llllDEP~~~LD~~~~~~l~~~L~~~~~~~~tiii~sH~~~~~~~~~ 191 (223)
T TIGR03740 132 RLGIAIALLNHPKLLILDEPTNGLDPIGIQELRELIRSFPEQGITVILSSHILSEVQQLA 191 (223)
T ss_pred HHHHHHHHhcCCCEEEECCCccCCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHHhc
Confidence 33466777788899999999765 555555566655543 24667999999988765433
No 214
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=97.48 E-value=0.0011 Score=66.90 Aligned_cols=58 Identities=21% Similarity=0.357 Sum_probs=39.7
Q ss_pred HHHHHHHHhCCceEEEEeCCCCC-CccChHHHHHhhcCC-CCCcEEEEEcCCHHHHHHhC
Q 047321 200 MKQIQEYITGKKIFLVLDDVWDG-DYKKWDPFFSCLKNG-HHESKILITTHDRSVALQLG 257 (807)
Q Consensus 200 ~~~l~~~l~~k~~LlVlDdv~~~-~~~~~~~l~~~l~~~-~~gs~IliTTR~~~v~~~~~ 257 (807)
.-.+.+.+..++-++++|++... |....+.+...+... ..|..||++|++......+.
T Consensus 140 rv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~ 199 (222)
T cd03224 140 MLAIARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIRELRDEGVTILLVEQNARFALEIA 199 (222)
T ss_pred HHHHHHHHhcCCCEEEECCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhc
Confidence 34466677778889999999765 444555566665433 24678999999987655443
No 215
>PRK13537 nodulation ABC transporter NodI; Provisional
Probab=97.47 E-value=0.00094 Score=70.66 Aligned_cols=58 Identities=24% Similarity=0.222 Sum_probs=40.4
Q ss_pred HHHHHHHHhCCceEEEEeCCCCC-CccChHHHHHhhcCC-CCCcEEEEEcCCHHHHHHhC
Q 047321 200 MKQIQEYITGKKIFLVLDDVWDG-DYKKWDPFFSCLKNG-HHESKILITTHDRSVALQLG 257 (807)
Q Consensus 200 ~~~l~~~l~~k~~LlVlDdv~~~-~~~~~~~l~~~l~~~-~~gs~IliTTR~~~v~~~~~ 257 (807)
.-.+.+.+-.++-+++||++.+. |...-..+...+... ..|..||+||++.+.+..++
T Consensus 146 rl~la~aL~~~P~lllLDEPt~gLD~~~~~~l~~~l~~l~~~g~till~sH~l~e~~~~~ 205 (306)
T PRK13537 146 RLTLARALVNDPDVLVLDEPTTGLDPQARHLMWERLRSLLARGKTILLTTHFMEEAERLC 205 (306)
T ss_pred HHHHHHHHhCCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhC
Confidence 33467778889999999999765 444444455555432 34778999999988765544
No 216
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=97.47 E-value=0.00055 Score=69.52 Aligned_cols=58 Identities=12% Similarity=0.241 Sum_probs=39.6
Q ss_pred HHHHHHHHhCCceEEEEeCCCCC-CccChHHHHHhhcCC--CCCcEEEEEcCCHHHHHHhC
Q 047321 200 MKQIQEYITGKKIFLVLDDVWDG-DYKKWDPFFSCLKNG--HHESKILITTHDRSVALQLG 257 (807)
Q Consensus 200 ~~~l~~~l~~k~~LlVlDdv~~~-~~~~~~~l~~~l~~~--~~gs~IliTTR~~~v~~~~~ 257 (807)
.-.+.+.+..++-+++||++... |....+.+...+... ..|..||++|++......+.
T Consensus 137 rv~laral~~~p~lllLDEP~~gLD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~~~~~~~ 197 (232)
T PRK10771 137 RVALARCLVREQPILLLDEPFSALDPALRQEMLTLVSQVCQERQLTLLMVSHSLEDAARIA 197 (232)
T ss_pred HHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhC
Confidence 34466677788889999999665 445555566655543 23678999999988765543
No 217
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.47 E-value=0.0013 Score=67.01 Aligned_cols=61 Identities=13% Similarity=0.087 Sum_probs=41.3
Q ss_pred HHHHHHHHHHHhCCceEEEEeCCCCC-CccChHHHHHhhcCCC--CCcEEEEEcCCHHHHHHhC
Q 047321 197 ESLMKQIQEYITGKKIFLVLDDVWDG-DYKKWDPFFSCLKNGH--HESKILITTHDRSVALQLG 257 (807)
Q Consensus 197 ~~~~~~l~~~l~~k~~LlVlDdv~~~-~~~~~~~l~~~l~~~~--~gs~IliTTR~~~v~~~~~ 257 (807)
+...-.+.+.+..++-+++||++... |......+...+.... .|..||++|++.+.+..+.
T Consensus 141 ~~qrv~ia~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsH~~~~~~~~~ 204 (235)
T cd03261 141 MKKRVALARALALDPELLLYDEPTAGLDPIASGVIDDLIRSLKKELGLTSIMVTHDLDTAFAIA 204 (235)
T ss_pred HHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhc
Confidence 33344567777888899999999765 4444555666665432 3677999999987665443
No 218
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=97.47 E-value=0.0029 Score=66.53 Aligned_cols=95 Identities=9% Similarity=0.086 Sum_probs=66.7
Q ss_pred CCceEEEEeCCCCCCccChHHHHHhhcCCCCCcEEEEEcCCHH-HHHHh-CCCceEeCCCCChhhHHHHHHHHHhccCCc
Q 047321 209 GKKIFLVLDDVWDGDYKKWDPFFSCLKNGHHESKILITTHDRS-VALQL-GSIDIIPVKELGEGECWLLFKQIAFLRRSF 286 (807)
Q Consensus 209 ~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~IliTTR~~~-v~~~~-~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~ 286 (807)
+++-++|+|++...+...-..++..+..-..++.+|++|.+.. +...+ .-...+.+.+++.+++.+.+.+.. .
T Consensus 112 g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~~~fiL~~~~~~~lLpTIrSRCq~i~~~~~~~~~~~~~L~~~~----~- 186 (319)
T PRK08769 112 GIAQVVIVDPADAINRAACNALLKTLEEPSPGRYLWLISAQPARLPATIRSRCQRLEFKLPPAHEALAWLLAQG----V- 186 (319)
T ss_pred CCcEEEEeccHhhhCHHHHHHHHHHhhCCCCCCeEEEEECChhhCchHHHhhheEeeCCCcCHHHHHHHHHHcC----C-
Confidence 5667999999976666666678888877777887877777643 33222 225678999999999988886521 1
Q ss_pred cCccchHHHHHHHHHHcCCCHHHHHHH
Q 047321 287 EDCEKLEPIGRKIASKCKGLPLAAKVI 313 (807)
Q Consensus 287 ~~~~~~~~~~~~I~~~c~glPLai~~~ 313 (807)
. ...+..++..++|.|+.+..+
T Consensus 187 -~----~~~a~~~~~l~~G~p~~A~~~ 208 (319)
T PRK08769 187 -S----ERAAQEALDAARGHPGLAAQW 208 (319)
T ss_pred -C----hHHHHHHHHHcCCCHHHHHHH
Confidence 1 223567899999999866543
No 219
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=97.47 E-value=0.0011 Score=66.82 Aligned_cols=125 Identities=18% Similarity=0.096 Sum_probs=69.0
Q ss_pred CceEEEEEccCCChHHHHHHHHHcCcccccccceEEEEE------------eCCCCCHHH------------------HH
Q 047321 130 GLDVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVC------------VSNTFEEIS------------------VA 179 (807)
Q Consensus 130 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~------------~~~~~~~~~------------------~~ 179 (807)
.-.+++|+|++|+|||||++.+..-... ..+.+|+. +....++.+ ..
T Consensus 47 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~p---~~G~i~~~g~~~~~~~~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~ 123 (224)
T cd03220 47 RGERIGLIGRNGAGKSTLLRLLAGIYPP---DSGTVTVRGRVSSLLGLGGGFNPELTGRENIYLNGRLLGLSRKEIDEKI 123 (224)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCC---CceEEEECCEEchhhcccccCCCCCcHHHHHHHHHHHcCCCHHHHHHHH
Confidence 4568999999999999999999863221 11111110 001111111 11
Q ss_pred HHHHHHcCCCC------CCCccHHHHHHHHHHHHhCCceEEEEeCCCCC-CccChHHHHHhhcCC-CCCcEEEEEcCCHH
Q 047321 180 KAIIEGLGVSA------FGLSEFESLMKQIQEYITGKKIFLVLDDVWDG-DYKKWDPFFSCLKNG-HHESKILITTHDRS 251 (807)
Q Consensus 180 ~~i~~~l~~~~------~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~-~~~~~~~l~~~l~~~-~~gs~IliTTR~~~ 251 (807)
.++++.++... ......+...-.+.+.+-.++-++++|++... |...-..+...+... ..|..||++|++.+
T Consensus 124 ~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEP~~gLD~~~~~~~~~~l~~~~~~~~tiii~sH~~~ 203 (224)
T cd03220 124 DEIIEFSELGDFIDLPVKTYSSGMKARLAFAIATALEPDILLIDEVLAVGDAAFQEKCQRRLRELLKQGKTVILVSHDPS 203 (224)
T ss_pred HHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH
Confidence 22233333211 11122333344577788889999999999764 333333344444332 23567999999987
Q ss_pred HHHHhC
Q 047321 252 VALQLG 257 (807)
Q Consensus 252 v~~~~~ 257 (807)
.+....
T Consensus 204 ~~~~~~ 209 (224)
T cd03220 204 SIKRLC 209 (224)
T ss_pred HHHHhC
Confidence 765443
No 220
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.46 E-value=0.0019 Score=65.76 Aligned_cols=66 Identities=14% Similarity=0.111 Sum_probs=44.4
Q ss_pred HHHHHHHHHHHhCCceEEEEeCCCCC-CccChHHHHHhhcCCCCCcEEEEEcCCHHHHHHhCCCceEeC
Q 047321 197 ESLMKQIQEYITGKKIFLVLDDVWDG-DYKKWDPFFSCLKNGHHESKILITTHDRSVALQLGSIDIIPV 264 (807)
Q Consensus 197 ~~~~~~l~~~l~~k~~LlVlDdv~~~-~~~~~~~l~~~l~~~~~gs~IliTTR~~~v~~~~~~~~~~~l 264 (807)
+...-.+.+.+..++-+++||++... |....+.+...+.....|..||++|++...... ..+++.+
T Consensus 143 ~~qrv~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~--~d~v~~l 209 (234)
T cd03251 143 QRQRIAIARALLKDPPILILDEATSALDTESERLVQAALERLMKNRTTFVIAHRLSTIEN--ADRIVVL 209 (234)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHhh--CCEEEEe
Confidence 34444567777788889999999665 555555666666544456779999999877654 3344444
No 221
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=97.46 E-value=0.0011 Score=65.23 Aligned_cols=119 Identities=19% Similarity=0.209 Sum_probs=67.9
Q ss_pred CceEEEEEccCCChHHHHHHHHHcCcccccccceEEEE---------------EeCCCC---CHHHHHHHHHHHcCCCCC
Q 047321 130 GLDVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWV---------------CVSNTF---EEISVAKAIIEGLGVSAF 191 (807)
Q Consensus 130 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv---------------~~~~~~---~~~~~~~~i~~~l~~~~~ 191 (807)
.-.+++|.|++|+|||||++.+..-.. .....+.+++ .+.+.. ....+...+.......
T Consensus 34 ~Ge~~~l~G~nGsGKStLl~~i~Gl~~-~~~~~G~i~~~g~~~~~~~~~~~i~~~~q~~~~~~~~t~~~~i~~~~~~~-- 110 (194)
T cd03213 34 PGELTAIMGPSGAGKSTLLNALAGRRT-GLGVSGEVLINGRPLDKRSFRKIIGYVPQDDILHPTLTVRETLMFAAKLR-- 110 (194)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCC-CCCCceEEEECCEeCchHhhhheEEEccCcccCCCCCcHHHHHHHHHHhc--
Confidence 457999999999999999999986320 0111111111 011111 1112222221110000
Q ss_pred CCccHHHHHHHHHHHHhCCceEEEEeCCCCC-CccChHHHHHhhcCC-CCCcEEEEEcCCHH
Q 047321 192 GLSEFESLMKQIQEYITGKKIFLVLDDVWDG-DYKKWDPFFSCLKNG-HHESKILITTHDRS 251 (807)
Q Consensus 192 ~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~-~~~~~~~l~~~l~~~-~~gs~IliTTR~~~ 251 (807)
.....+...-.+.+.+..++-++++|++.+. |....+.+...+... ..|..||++|++..
T Consensus 111 ~LS~G~~qrv~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~ 172 (194)
T cd03213 111 GLSGGERKRVSIALELVSNPSLLFLDEPTSGLDSSSALQVMSLLRRLADTGRTIICSIHQPS 172 (194)
T ss_pred cCCHHHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEecCch
Confidence 2233344445577778888899999999765 555555666665543 24778999999864
No 222
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.46 E-value=0.001 Score=67.67 Aligned_cols=60 Identities=15% Similarity=0.181 Sum_probs=40.7
Q ss_pred HHHHHHHHHHhCCceEEEEeCCCCC-CccChHHHHHhhcCC--CCCcEEEEEcCCHHHHHHhC
Q 047321 198 SLMKQIQEYITGKKIFLVLDDVWDG-DYKKWDPFFSCLKNG--HHESKILITTHDRSVALQLG 257 (807)
Q Consensus 198 ~~~~~l~~~l~~k~~LlVlDdv~~~-~~~~~~~l~~~l~~~--~~gs~IliTTR~~~v~~~~~ 257 (807)
...-.+.+.+..++-+++||++... |......+...+... ..|..||++|++.+....+.
T Consensus 146 ~qrv~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~~~~~~~ 208 (233)
T cd03258 146 KQRVGIARALANNPKVLLCDEATSALDPETTQSILALLRDINRELGLTIVLITHEMEVVKRIC 208 (233)
T ss_pred HHHHHHHHHHhcCCCEEEecCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhC
Confidence 3344466777788889999999765 444445566666543 23678999999987765443
No 223
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=97.46 E-value=0.002 Score=64.88 Aligned_cols=59 Identities=14% Similarity=0.194 Sum_probs=40.5
Q ss_pred HHHHHHHHHHHhCCceEEEEeCCCCC-CccChHHHHHhhcCCCCCcEEEEEcCCHHHHHH
Q 047321 197 ESLMKQIQEYITGKKIFLVLDDVWDG-DYKKWDPFFSCLKNGHHESKILITTHDRSVALQ 255 (807)
Q Consensus 197 ~~~~~~l~~~l~~k~~LlVlDdv~~~-~~~~~~~l~~~l~~~~~gs~IliTTR~~~v~~~ 255 (807)
+...-.+.+.+..++-++++|++... |....+.+...+.....+..||++|++......
T Consensus 144 ~~qr~~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~ 203 (221)
T cd03244 144 QRQLLCLARALLRKSKILVLDEATASVDPETDALIQKTIREAFKDCTVLTIAHRLDTIID 203 (221)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHhh
Confidence 33344466777788889999999765 555555566666554445679999998876654
No 224
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=97.45 E-value=0.001 Score=65.85 Aligned_cols=124 Identities=15% Similarity=0.183 Sum_probs=69.7
Q ss_pred CceEEEEEccCCChHHHHHHHHHcCcccc---------------cccc-eEEEEEeCC----CCCH------------HH
Q 047321 130 GLDVISLVGLGGIGKTTLAQLAYNNDEVK---------------RNFE-KVIWVCVSN----TFEE------------IS 177 (807)
Q Consensus 130 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~---------------~~f~-~~~wv~~~~----~~~~------------~~ 177 (807)
.-.+++|+|.+|+|||||.+.+..-.... ..+. .+.++.-.. ..++ .+
T Consensus 25 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~ 104 (201)
T cd03231 25 AGEALQVTGPNGSGKTTLLRILAGLSPPLAGRVLLNGGPLDFQRDSIARGLLYLGHAPGIKTTLSVLENLRFWHADHSDE 104 (201)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccccHHhhhheEEeccccccCCCcCHHHHHHhhcccccHH
Confidence 45799999999999999999986531100 0011 122221100 0111 11
Q ss_pred HHHHHHHHcCCCC------CCCccHHHHHHHHHHHHhCCceEEEEeCCCCC-CccChHHHHHhhcCC-CCCcEEEEEcCC
Q 047321 178 VAKAIIEGLGVSA------FGLSEFESLMKQIQEYITGKKIFLVLDDVWDG-DYKKWDPFFSCLKNG-HHESKILITTHD 249 (807)
Q Consensus 178 ~~~~i~~~l~~~~------~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~-~~~~~~~l~~~l~~~-~~gs~IliTTR~ 249 (807)
....+++.++... ......+...-.+.+.+..++-++++|++... |....+.+...+... ..|..||++|++
T Consensus 105 ~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~sH~ 184 (201)
T cd03231 105 QVEEALARVGLNGFEDRPVAQLSAGQQRRVALARLLLSGRPLWILDEPTTALDKAGVARFAEAMAGHCARGGMVVLTTHQ 184 (201)
T ss_pred HHHHHHHHcCChhhhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecC
Confidence 2233444444321 11122333444567777788889999999765 555555566666432 346679999997
Q ss_pred HHHH
Q 047321 250 RSVA 253 (807)
Q Consensus 250 ~~v~ 253 (807)
..-.
T Consensus 185 ~~~~ 188 (201)
T cd03231 185 DLGL 188 (201)
T ss_pred chhh
Confidence 6543
No 225
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=97.45 E-value=0.0011 Score=66.04 Aligned_cols=58 Identities=19% Similarity=0.181 Sum_probs=40.0
Q ss_pred HHHHHHHHhCCceEEEEeCCCCC-CccChHHHHHhhcCC-CCCcEEEEEcCCHHHHHHhC
Q 047321 200 MKQIQEYITGKKIFLVLDDVWDG-DYKKWDPFFSCLKNG-HHESKILITTHDRSVALQLG 257 (807)
Q Consensus 200 ~~~l~~~l~~k~~LlVlDdv~~~-~~~~~~~l~~~l~~~-~~gs~IliTTR~~~v~~~~~ 257 (807)
.-.+.+.+..++-++++|++... |....+.+...+... ..|..||++|++...+....
T Consensus 134 rv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~~~ 193 (208)
T cd03268 134 RLGIALALLGNPDLLILDEPTNGLDPDGIKELRELILSLRDQGITVLISSHLLSEIQKVA 193 (208)
T ss_pred HHHHHHHHhcCCCEEEECCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHHhc
Confidence 33466777788889999999765 455555566555532 24677999999988765443
No 226
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=97.45 E-value=0.0011 Score=66.26 Aligned_cols=56 Identities=18% Similarity=0.238 Sum_probs=38.8
Q ss_pred HHHHHHHHhCCceEEEEeCCCCC-CccChHHHHHhhcCC--CCCcEEEEEcCCHHHHHH
Q 047321 200 MKQIQEYITGKKIFLVLDDVWDG-DYKKWDPFFSCLKNG--HHESKILITTHDRSVALQ 255 (807)
Q Consensus 200 ~~~l~~~l~~k~~LlVlDdv~~~-~~~~~~~l~~~l~~~--~~gs~IliTTR~~~v~~~ 255 (807)
.-.+.+.+..++-++++|++... |......+...+... ..|..||++|++......
T Consensus 136 rl~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~~tii~vsh~~~~~~~ 194 (213)
T TIGR01277 136 RVALARCLVRPNPILLLDEPFSALDPLLREEMLALVKQLCSERQRTLLMVTHHLSDARA 194 (213)
T ss_pred HHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHh
Confidence 34466677778889999999765 555555566665543 236789999999876544
No 227
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.44 E-value=0.0016 Score=65.91 Aligned_cols=59 Identities=17% Similarity=0.143 Sum_probs=41.3
Q ss_pred HHHHHHHHHHHhCCceEEEEeCCCCC-CccChHHHHHhhcCCCCCcEEEEEcCCHHHHHH
Q 047321 197 ESLMKQIQEYITGKKIFLVLDDVWDG-DYKKWDPFFSCLKNGHHESKILITTHDRSVALQ 255 (807)
Q Consensus 197 ~~~~~~l~~~l~~k~~LlVlDdv~~~-~~~~~~~l~~~l~~~~~gs~IliTTR~~~v~~~ 255 (807)
+...-.+.+.+..++-+++||++... |....+.+...+.....|..||++|++......
T Consensus 144 ~~~rv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~ 203 (229)
T cd03254 144 ERQLLAIARAMLRDPKILILDEATSNIDTETEKLIQEALEKLMKGRTSIIIAHRLSTIKN 203 (229)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHhh
Confidence 33344567777888999999999765 555555566666544447789999999877653
No 228
>PLN03150 hypothetical protein; Provisional
Probab=97.44 E-value=0.00012 Score=85.39 Aligned_cols=99 Identities=15% Similarity=0.183 Sum_probs=77.3
Q ss_pred CCCCCccccCcccccccccCCCccc-cchhhhccccCCCCCCcccEEEEccCCCCCCCcccccCCCCccEEeeccCcccc
Q 047321 667 SSSSPSVIAFPKLKSLEIDGMKELE-EWNYRITRKENISIMPRLSSLQIMNCRKLKALPDYLLQTIALQKLSIYSCDLLE 745 (807)
Q Consensus 667 ~~~~~~~~~l~~L~~L~l~~~~~l~-~~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~lp~~l~~l~~L~~L~l~~c~~l~ 745 (807)
+..|..+..+++|+.|+|+++ .+. .+|. .+..+++|+.|++++|.--..+|..++.+++|+.|+|++|...+
T Consensus 432 g~ip~~i~~L~~L~~L~Ls~N-~l~g~iP~------~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N~l~g 504 (623)
T PLN03150 432 GFIPNDISKLRHLQSINLSGN-SIRGNIPP------SLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSG 504 (623)
T ss_pred ccCCHHHhCCCCCCEEECCCC-cccCcCCh------HHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcCCcccc
Confidence 355667788999999999986 443 4443 46789999999999995556899999999999999999987777
Q ss_pred cccccccccCCC-CCCCCeeeeccCCCcccCC
Q 047321 746 ELPILEDRRTTD-IPRLSSLAIWYCPKLKVLP 776 (807)
Q Consensus 746 ~lP~~~~~~~~~-l~~L~~L~i~~c~~l~~lP 776 (807)
.+| ..+.. +.++..+++.+++.+...|
T Consensus 505 ~iP----~~l~~~~~~~~~l~~~~N~~lc~~p 532 (623)
T PLN03150 505 RVP----AALGGRLLHRASFNFTDNAGLCGIP 532 (623)
T ss_pred cCC----hHHhhccccCceEEecCCccccCCC
Confidence 888 54443 3466788888877777666
No 229
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=97.44 E-value=0.00097 Score=67.75 Aligned_cols=59 Identities=22% Similarity=0.257 Sum_probs=38.7
Q ss_pred HHHHHHHHHhCCceEEEEeCCCCC-CccChHHHHHhhcCC-CCCcEEEEEcCCHHHHHHhC
Q 047321 199 LMKQIQEYITGKKIFLVLDDVWDG-DYKKWDPFFSCLKNG-HHESKILITTHDRSVALQLG 257 (807)
Q Consensus 199 ~~~~l~~~l~~k~~LlVlDdv~~~-~~~~~~~l~~~l~~~-~~gs~IliTTR~~~v~~~~~ 257 (807)
..-.+.+.+..++-+++||++... |...-+.+...+... ..|..||++|++.+......
T Consensus 140 qrl~la~al~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~~~~~~~ 200 (232)
T cd03218 140 RRVEIARALATNPKFLLLDEPFAGVDPIAVQDIQKIIKILKDRGIGVLITDHNVRETLSIT 200 (232)
T ss_pred HHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhC
Confidence 334567777888999999999765 444444455544432 24667999999986554433
No 230
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.44 E-value=0.0012 Score=68.86 Aligned_cols=61 Identities=16% Similarity=0.213 Sum_probs=41.8
Q ss_pred HHHHHHHHHHHhCCceEEEEeCCCCC-CccChHHHHHhhcCC-CCCcEEEEEcCCHHHHHHhC
Q 047321 197 ESLMKQIQEYITGKKIFLVLDDVWDG-DYKKWDPFFSCLKNG-HHESKILITTHDRSVALQLG 257 (807)
Q Consensus 197 ~~~~~~l~~~l~~k~~LlVlDdv~~~-~~~~~~~l~~~l~~~-~~gs~IliTTR~~~v~~~~~ 257 (807)
....-.+.+.+..++-++++|++... |......+...+... ..|..||++|++.+.+..+.
T Consensus 143 ~~qrv~laraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tili~tH~~~~~~~~~ 205 (274)
T PRK13647 143 QKKRVAIAGVLAMDPDVIVLDEPMAYLDPRGQETLMEILDRLHNQGKTVIVATHDVDLAAEWA 205 (274)
T ss_pred HHHHHHHHHHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhC
Confidence 33344577788889999999999765 444455555555433 23678999999988765443
No 231
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=97.43 E-value=0.0017 Score=64.95 Aligned_cols=128 Identities=15% Similarity=0.144 Sum_probs=72.0
Q ss_pred CceEEEEEccCCChHHHHHHHHHcCcccc-c--ccc-----------eEEEEEeCCC----CCHH---------------
Q 047321 130 GLDVISLVGLGGIGKTTLAQLAYNNDEVK-R--NFE-----------KVIWVCVSNT----FEEI--------------- 176 (807)
Q Consensus 130 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~-~--~f~-----------~~~wv~~~~~----~~~~--------------- 176 (807)
.-.+++|+|++|+|||||++.+....... + .|+ .+.++.-... .++.
T Consensus 36 ~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~i~~~~~~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~ 115 (214)
T PRK13543 36 AGEALLVQGDNGAGKTTLLRVLAGLLHVESGQIQIDGKTATRGDRSRFMAYLGHLPGLKADLSTLENLHFLCGLHGRRAK 115 (214)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCCCCCCeeEEECCEEccchhhhhceEEeecCcccccCCcHHHHHHHHHHhcCCcHH
Confidence 45689999999999999999997632110 0 011 1223321111 1111
Q ss_pred HHHHHHHHHcCCCC------CCCccHHHHHHHHHHHHhCCceEEEEeCCCCC-CccChHHHHHhhcC-CCCCcEEEEEcC
Q 047321 177 SVAKAIIEGLGVSA------FGLSEFESLMKQIQEYITGKKIFLVLDDVWDG-DYKKWDPFFSCLKN-GHHESKILITTH 248 (807)
Q Consensus 177 ~~~~~i~~~l~~~~------~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~-~~~~~~~l~~~l~~-~~~gs~IliTTR 248 (807)
+....+++.++... ......+...-.+.+.+-.++-++++|++.+. |....+.+...+.. ...|..||++|+
T Consensus 116 ~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH 195 (214)
T PRK13543 116 QMPGSALAIVGLAGYEDTLVRQLSAGQKKRLALARLWLSPAPLWLLDEPYANLDLEGITLVNRMISAHLRGGGAALVTTH 195 (214)
T ss_pred HHHHHHHHHcCChhhccCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEec
Confidence 11223333333221 11122334444566777778889999999665 44444555555543 234567999999
Q ss_pred CHHHHHHhC
Q 047321 249 DRSVALQLG 257 (807)
Q Consensus 249 ~~~v~~~~~ 257 (807)
+......+.
T Consensus 196 ~~~~~~~~~ 204 (214)
T PRK13543 196 GAYAAPPVR 204 (214)
T ss_pred Chhhhhhhc
Confidence 987765544
No 232
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=97.43 E-value=0.00097 Score=65.39 Aligned_cols=53 Identities=21% Similarity=0.245 Sum_probs=36.2
Q ss_pred HHHHHHHHHhCCceEEEEeCCCCC-CccChHHHHHhhcCC-CCCcEEEEEcCCHH
Q 047321 199 LMKQIQEYITGKKIFLVLDDVWDG-DYKKWDPFFSCLKNG-HHESKILITTHDRS 251 (807)
Q Consensus 199 ~~~~l~~~l~~k~~LlVlDdv~~~-~~~~~~~l~~~l~~~-~~gs~IliTTR~~~ 251 (807)
..-.+.+.+..++-++++|++... |....+.+...+... ..|..||++|++.+
T Consensus 134 qrv~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tili~sH~~~ 188 (190)
T TIGR01166 134 KRVAIAGAVAMRPDVLLLDEPTAGLDPAGREQMLAILRRLRAEGMTVVISTHDVD 188 (190)
T ss_pred HHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeeccc
Confidence 344466777788899999999765 444455555555432 34678999998764
No 233
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.43 E-value=0.0015 Score=67.15 Aligned_cols=58 Identities=16% Similarity=0.056 Sum_probs=40.4
Q ss_pred HHHHHHHHHhCCceEEEEeCCCCC-CccChHHHHHhhcCCCCCcEEEEEcCCHHHHHHh
Q 047321 199 LMKQIQEYITGKKIFLVLDDVWDG-DYKKWDPFFSCLKNGHHESKILITTHDRSVALQL 256 (807)
Q Consensus 199 ~~~~l~~~l~~k~~LlVlDdv~~~-~~~~~~~l~~~l~~~~~gs~IliTTR~~~v~~~~ 256 (807)
..-.+.+.+..++-+++||++... |....+.+...+.....|..||++|++.......
T Consensus 153 qrv~laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~ 211 (250)
T PRK14247 153 QRLCIARALAFQPEVLLADEPTANLDPENTAKIESLFLELKKDMTIVLVTHFPQQAARI 211 (250)
T ss_pred HHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHh
Confidence 344466777788999999999665 5555555666665443467799999998766543
No 234
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=97.42 E-value=0.0016 Score=65.72 Aligned_cols=64 Identities=14% Similarity=0.133 Sum_probs=42.9
Q ss_pred HHHHHHHHHhCCceEEEEeCCCCC-CccChHHHHHhhcCC--CCCcEEEEEcCCHHHHHHhCCCceEeC
Q 047321 199 LMKQIQEYITGKKIFLVLDDVWDG-DYKKWDPFFSCLKNG--HHESKILITTHDRSVALQLGSIDIIPV 264 (807)
Q Consensus 199 ~~~~l~~~l~~k~~LlVlDdv~~~-~~~~~~~l~~~l~~~--~~gs~IliTTR~~~v~~~~~~~~~~~l 264 (807)
..-.+.+.+..++-++++|++... |....+.+...+... ..|..||++|++.+.... ...++.+
T Consensus 144 qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvii~sh~~~~~~~--~d~i~~l 210 (225)
T PRK10247 144 QRISLIRNLQFMPKVLLLDEITSALDESNKHNVNEIIHRYVREQNIAVLWVTHDKDEINH--ADKVITL 210 (225)
T ss_pred HHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECChHHHHh--CCEEEEE
Confidence 344467777888899999999665 455555566666543 236789999999887643 3344444
No 235
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL. Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.
Probab=97.42 E-value=0.0027 Score=64.12 Aligned_cols=65 Identities=14% Similarity=0.142 Sum_probs=42.8
Q ss_pred HHHHHHHHHhCCceEEEEeCCCCC-CccChHHHHHhhcCC-CCCcEEEEEcCCHHHHHHhCCCceEeC
Q 047321 199 LMKQIQEYITGKKIFLVLDDVWDG-DYKKWDPFFSCLKNG-HHESKILITTHDRSVALQLGSIDIIPV 264 (807)
Q Consensus 199 ~~~~l~~~l~~k~~LlVlDdv~~~-~~~~~~~l~~~l~~~-~~gs~IliTTR~~~v~~~~~~~~~~~l 264 (807)
..-.+.+.+-.++-++++|++... |......+...+... ..|..||++|++...+..+.. .++.+
T Consensus 156 qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vsH~~~~~~~~~d-~i~~~ 222 (224)
T TIGR02324 156 QRVNIARGFIADYPILLLDEPTASLDAANRQVVVELIAEAKARGAALIGIFHDEEVRELVAD-RVMDV 222 (224)
T ss_pred HHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcc-eeEec
Confidence 344466777778889999999665 444555565655542 246789999999887655443 34443
No 236
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.41 E-value=0.0016 Score=66.42 Aligned_cols=59 Identities=17% Similarity=0.181 Sum_probs=41.7
Q ss_pred HHHHHHHHHHHhCCceEEEEeCCCCC-CccChHHHHHhhcCCCCCcEEEEEcCCHHHHHH
Q 047321 197 ESLMKQIQEYITGKKIFLVLDDVWDG-DYKKWDPFFSCLKNGHHESKILITTHDRSVALQ 255 (807)
Q Consensus 197 ~~~~~~l~~~l~~k~~LlVlDdv~~~-~~~~~~~l~~~l~~~~~gs~IliTTR~~~v~~~ 255 (807)
+...-.+.+.+..++-+++||++... |....+.+...+.....|..||++|++......
T Consensus 142 ~~~rl~la~aL~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sh~~~~~~~ 201 (236)
T cd03253 142 EKQRVAIARAILKNPPILLLDEATSALDTHTEREIQAALRDVSKGRTTIVIAHRLSTIVN 201 (236)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEcCCHHHHHh
Confidence 33344567778889999999999765 555555566666544337789999999877654
No 237
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=97.41 E-value=0.0014 Score=71.45 Aligned_cols=177 Identities=14% Similarity=0.087 Sum_probs=94.0
Q ss_pred ccccccchHHHHHHHHhCCCCC-------CCCCceEEEEEccCCChHHHHHHHHHcCcccccccceEEEEEeCCCCCHHH
Q 047321 105 GVCGRVDEKNELLSKLLCGSSE-------QQKGLDVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSNTFEEIS 177 (807)
Q Consensus 105 ~~vGR~~~~~~l~~~L~~~~~~-------~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~ 177 (807)
++.|.+..+++|.+.+..+-.. +-...+-+.++|++|+|||++|+.+++. ....| +.+.. ..
T Consensus 146 digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LAkalA~~--l~~~f-----i~i~~----s~ 214 (398)
T PTZ00454 146 DIGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLAKAVAHH--TTATF-----IRVVG----SE 214 (398)
T ss_pred HcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHh--cCCCE-----EEEeh----HH
Confidence 5788888888887766321100 0134577899999999999999999984 22222 11111 11
Q ss_pred HHHHHHHHcCCCCCCCccHHHHHHHHHHHHhCCceEEEEeCCCCC-------C---ccChHH-HHHhhc---C--CCCCc
Q 047321 178 VAKAIIEGLGVSAFGLSEFESLMKQIQEYITGKKIFLVLDDVWDG-------D---YKKWDP-FFSCLK---N--GHHES 241 (807)
Q Consensus 178 ~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~-------~---~~~~~~-l~~~l~---~--~~~gs 241 (807)
+. ....+ .....+...+.......+.+|++|++..- . ...... +...+. . ...+.
T Consensus 215 l~----~k~~g-----e~~~~lr~lf~~A~~~~P~ILfIDEID~i~~~r~~~~~~~d~~~~r~l~~LL~~ld~~~~~~~v 285 (398)
T PTZ00454 215 FV----QKYLG-----EGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGADREVQRILLELLNQMDGFDQTTNV 285 (398)
T ss_pred HH----HHhcc-----hhHHHHHHHHHHHHhcCCeEEEEECHhhhccccccccCCccHHHHHHHHHHHHHhhccCCCCCE
Confidence 11 11100 01112222233334567899999997431 0 011111 222222 1 12456
Q ss_pred EEEEEcCCHHHHH-H-hC---CCceEeCCCCChhhHHHHHHHHHhccCCccCccchHHHHHHHHHHcCCC
Q 047321 242 KILITTHDRSVAL-Q-LG---SIDIIPVKELGEGECWLLFKQIAFLRRSFEDCEKLEPIGRKIASKCKGL 306 (807)
Q Consensus 242 ~IliTTR~~~v~~-~-~~---~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~~~~I~~~c~gl 306 (807)
.||+||...+... . .. -...++++..+.++..++|..+...... .....+ ..+++.+.|.
T Consensus 286 ~VI~aTN~~d~LDpAllR~GRfd~~I~~~~P~~~~R~~Il~~~~~~~~l-~~dvd~----~~la~~t~g~ 350 (398)
T PTZ00454 286 KVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLIFQTITSKMNL-SEEVDL----EDFVSRPEKI 350 (398)
T ss_pred EEEEecCCchhCCHHHcCCCcccEEEEeCCcCHHHHHHHHHHHHhcCCC-CcccCH----HHHHHHcCCC
Confidence 7888887654321 1 11 1346889888888888888765532221 222233 4556666554
No 238
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=97.40 E-value=0.0028 Score=62.86 Aligned_cols=125 Identities=16% Similarity=0.195 Sum_probs=70.5
Q ss_pred CceEEEEEccCCChHHHHHHHHHcCcccc-c--ccce-EEEEEeCC---------------CCCHHHHHHHHHHHcCC--
Q 047321 130 GLDVISLVGLGGIGKTTLAQLAYNNDEVK-R--NFEK-VIWVCVSN---------------TFEEISVAKAIIEGLGV-- 188 (807)
Q Consensus 130 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~-~--~f~~-~~wv~~~~---------------~~~~~~~~~~i~~~l~~-- 188 (807)
.-.+++|+|++|+|||||++.+..-.... . .|+. +.++.-.. .+.... .....+.++.
T Consensus 30 ~G~~~~i~G~nG~GKSTLl~~i~G~~~~~~G~i~~~g~i~~~~q~~~l~~~t~~enl~~~~~~~~~~-~~~~~~~~~l~~ 108 (204)
T cd03250 30 KGELVAIVGPVGSGKSSLLSALLGELEKLSGSVSVPGSIAYVSQEPWIQNGTIRENILFGKPFDEER-YEKVIKACALEP 108 (204)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCcCCCCCCeEEEcCEEEEEecCchhccCcHHHHhccCCCcCHHH-HHHHHHHcCcHH
Confidence 45699999999999999999997632211 1 1222 22221110 111111 1111211110
Q ss_pred ---------------CCCCCccHHHHHHHHHHHHhCCceEEEEeCCCCC-CccChHHHHHh-hcC-CCCCcEEEEEcCCH
Q 047321 189 ---------------SAFGLSEFESLMKQIQEYITGKKIFLVLDDVWDG-DYKKWDPFFSC-LKN-GHHESKILITTHDR 250 (807)
Q Consensus 189 ---------------~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~-~~~~~~~l~~~-l~~-~~~gs~IliTTR~~ 250 (807)
........+...-.+.+.+..++-++++|+.... |....+.+... +.. ...|..||++|++.
T Consensus 109 ~~~~~~~~~~~~~~~~~~~lS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~ll~~~~~~~~tvi~~sh~~ 188 (204)
T cd03250 109 DLEILPDGDLTEIGEKGINLSGGQKQRISLARAVYSDADIYLLDDPLSAVDAHVGRHIFENCILGLLLNNKTRILVTHQL 188 (204)
T ss_pred HHHhccCcccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHhccCCCEEEEEeCCH
Confidence 0112233444455577888889999999998665 44444555553 332 23477899999998
Q ss_pred HHHHH
Q 047321 251 SVALQ 255 (807)
Q Consensus 251 ~v~~~ 255 (807)
.....
T Consensus 189 ~~~~~ 193 (204)
T cd03250 189 QLLPH 193 (204)
T ss_pred HHHhh
Confidence 77654
No 239
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=97.40 E-value=0.0018 Score=64.94 Aligned_cols=59 Identities=19% Similarity=0.211 Sum_probs=40.0
Q ss_pred HHHHHHHHHHhCCceEEEEeCCCCC-CccChHHHHHhhcCC-CCCcEEEEEcCCHHHHHHh
Q 047321 198 SLMKQIQEYITGKKIFLVLDDVWDG-DYKKWDPFFSCLKNG-HHESKILITTHDRSVALQL 256 (807)
Q Consensus 198 ~~~~~l~~~l~~k~~LlVlDdv~~~-~~~~~~~l~~~l~~~-~~gs~IliTTR~~~v~~~~ 256 (807)
...-.+.+.+..++-+++||++... |......+...+... ..|..||++|++......+
T Consensus 143 ~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~~ 203 (214)
T TIGR02673 143 QQRVAIARAIVNSPPLLLADEPTGNLDPDLSERILDLLKRLNKRGTTVIVATHDLSLVDRV 203 (214)
T ss_pred HHHHHHHHHHhCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHh
Confidence 3344567777888999999999765 444445555555432 2466799999997766544
No 240
>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed
Probab=97.40 E-value=0.0017 Score=66.71 Aligned_cols=61 Identities=15% Similarity=0.109 Sum_probs=40.1
Q ss_pred HHHHHHHHHHHHhCCceEEEEeCCCCC-CccChHHHHHhhcCC-CCCcEEEEEcCCHHHHHHh
Q 047321 196 FESLMKQIQEYITGKKIFLVLDDVWDG-DYKKWDPFFSCLKNG-HHESKILITTHDRSVALQL 256 (807)
Q Consensus 196 ~~~~~~~l~~~l~~k~~LlVlDdv~~~-~~~~~~~l~~~l~~~-~~gs~IliTTR~~~v~~~~ 256 (807)
.+...-.+.+.+..++-+++||++.+. |...-+.+...+... ..|..||++|++.......
T Consensus 149 G~~qrv~laral~~~p~illLDEPt~~LD~~~~~~l~~~l~~l~~~~~tiii~sH~~~~~~~~ 211 (248)
T PRK09580 149 GEKKRNDILQMAVLEPELCILDESDSGLDIDALKIVADGVNSLRDGKRSFIIVTHYQRILDYI 211 (248)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhh
Confidence 334445577777888999999999765 433334454444322 2366799999998876654
No 241
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=97.39 E-value=0.006 Score=64.16 Aligned_cols=93 Identities=11% Similarity=0.099 Sum_probs=67.5
Q ss_pred CCceEEEEeCCCCCCccChHHHHHhhcCCCCCcEEEEEcCCHH-HHHHh-CCCceEeCCCCChhhHHHHHHHHHhccCCc
Q 047321 209 GKKIFLVLDDVWDGDYKKWDPFFSCLKNGHHESKILITTHDRS-VALQL-GSIDIIPVKELGEGECWLLFKQIAFLRRSF 286 (807)
Q Consensus 209 ~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~IliTTR~~~-v~~~~-~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~ 286 (807)
+.+-++|+|++..........+...+..-..++.+|++|.+.+ +...+ .-...+.+.+++.+++.+.+.... .
T Consensus 107 ~~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~lLpTI~SRCq~~~~~~~~~~~~~~~L~~~~----~- 181 (319)
T PRK06090 107 NGYRLFVIEPADAMNESASNALLKTLEEPAPNCLFLLVTHNQKRLLPTIVSRCQQWVVTPPSTAQAMQWLKGQG----I- 181 (319)
T ss_pred CCceEEEecchhhhCHHHHHHHHHHhcCCCCCeEEEEEECChhhChHHHHhcceeEeCCCCCHHHHHHHHHHcC----C-
Confidence 4566889999977677778889999888777787777777643 33333 335689999999999998886531 1
Q ss_pred cCccchHHHHHHHHHHcCCCHHHHHHH
Q 047321 287 EDCEKLEPIGRKIASKCKGLPLAAKVI 313 (807)
Q Consensus 287 ~~~~~~~~~~~~I~~~c~glPLai~~~ 313 (807)
. .+..++..++|.|+.+..+
T Consensus 182 -~------~~~~~l~l~~G~p~~A~~~ 201 (319)
T PRK06090 182 -T------VPAYALKLNMGSPLKTLAM 201 (319)
T ss_pred -c------hHHHHHHHcCCCHHHHHHH
Confidence 0 1356789999999976544
No 242
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=97.39 E-value=0.00044 Score=70.47 Aligned_cols=58 Identities=17% Similarity=0.286 Sum_probs=39.7
Q ss_pred HHHHHHHHhCCceEEEEeCCCCC-CccChHHHHHhhcCC-CCCcEEEEEcCCHHHHHHhC
Q 047321 200 MKQIQEYITGKKIFLVLDDVWDG-DYKKWDPFFSCLKNG-HHESKILITTHDRSVALQLG 257 (807)
Q Consensus 200 ~~~l~~~l~~k~~LlVlDdv~~~-~~~~~~~l~~~l~~~-~~gs~IliTTR~~~v~~~~~ 257 (807)
.-.+.+.+..++-++++|++... |......+...+... ..|..||++|++.+.+..+.
T Consensus 151 rv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~~~~~~~ 210 (236)
T cd03219 151 RLEIARALATDPKLLLLDEPAAGLNPEETEELAELIRELRERGITVLLVEHDMDVVMSLA 210 (236)
T ss_pred HHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhC
Confidence 34466777788899999999765 444455555555432 24667999999988765543
No 243
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=97.39 E-value=0.0033 Score=67.21 Aligned_cols=162 Identities=9% Similarity=0.040 Sum_probs=89.9
Q ss_pred cccc-ccchHHHHHHHHhCCCCCCCCCceEEEEEccCCChHHHHHHHHHcCcccccccceEEEEEeCCCCCHHHHHHHHH
Q 047321 105 GVCG-RVDEKNELLSKLLCGSSEQQKGLDVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSNTFEEISVAKAII 183 (807)
Q Consensus 105 ~~vG-R~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 183 (807)
.++| -+..++.+...+..+ .-...+.++|+.|+||||+|+.+.+..--....... ....-...+.+.
T Consensus 6 ~i~~~q~~~~~~L~~~~~~~-----~l~ha~Lf~G~~G~gk~~~a~~la~~l~c~~~~~~~-------~cg~C~~c~~~~ 73 (329)
T PRK08058 6 QLTALQPVVVKMLQNSIAKN-----RLSHAYLFEGAKGTGKKATALWLAKSLFCLERNGVE-------PCGTCTNCKRID 73 (329)
T ss_pred HHHhhHHHHHHHHHHHHHcC-----CCCceEEEECCCCCCHHHHHHHHHHHHCCCCCCCCC-------CCCcCHHHHHHh
Confidence 3566 556667777777532 245677999999999999998875421100000000 000000000110
Q ss_pred HHcCC------CCCCCccHHHHHHHHHHH----HhCCceEEEEeCCCCCCccChHHHHHhhcCCCCCcEEEEEcCCHH-H
Q 047321 184 EGLGV------SAFGLSEFESLMKQIQEY----ITGKKIFLVLDDVWDGDYKKWDPFFSCLKNGHHESKILITTHDRS-V 252 (807)
Q Consensus 184 ~~l~~------~~~~~~~~~~~~~~l~~~----l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~IliTTR~~~-v 252 (807)
..-.. ........+++.+.+... ..+.+-++|+|++..-+......++..+..-..++.+|++|.+.. +
T Consensus 74 ~~~hpD~~~i~~~~~~i~id~ir~l~~~~~~~~~~~~~kvviI~~a~~~~~~a~NaLLK~LEEPp~~~~~Il~t~~~~~l 153 (329)
T PRK08058 74 SGNHPDVHLVAPDGQSIKKDQIRYLKEEFSKSGVESNKKVYIIEHADKMTASAANSLLKFLEEPSGGTTAILLTENKHQI 153 (329)
T ss_pred cCCCCCEEEeccccccCCHHHHHHHHHHHhhCCcccCceEEEeehHhhhCHHHHHHHHHHhcCCCCCceEEEEeCChHhC
Confidence 00000 000011223332222211 235667899999966666666778888887777787777776643 2
Q ss_pred HHHh-CCCceEeCCCCChhhHHHHHHH
Q 047321 253 ALQL-GSIDIIPVKELGEGECWLLFKQ 278 (807)
Q Consensus 253 ~~~~-~~~~~~~l~~L~~~~~~~Lf~~ 278 (807)
...+ .-...+++.+++.++..+.+.+
T Consensus 154 l~TIrSRc~~i~~~~~~~~~~~~~L~~ 180 (329)
T PRK08058 154 LPTILSRCQVVEFRPLPPESLIQRLQE 180 (329)
T ss_pred cHHHHhhceeeeCCCCCHHHHHHHHHH
Confidence 2222 2256899999999999887764
No 244
>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.
Probab=97.39 E-value=0.0011 Score=70.94 Aligned_cols=62 Identities=18% Similarity=0.188 Sum_probs=43.0
Q ss_pred HHHHHHHHHHHhCCceEEEEeCCCCC-CccChHHHHHhhcCC--CCCcEEEEEcCCHHHHHHhCC
Q 047321 197 ESLMKQIQEYITGKKIFLVLDDVWDG-DYKKWDPFFSCLKNG--HHESKILITTHDRSVALQLGS 258 (807)
Q Consensus 197 ~~~~~~l~~~l~~k~~LlVlDdv~~~-~~~~~~~l~~~l~~~--~~gs~IliTTR~~~v~~~~~~ 258 (807)
+...-.+.+.+..++-++++|++.+. |...-..+...+..- ..|..||++|++.+++..+..
T Consensus 145 qkQRV~IARAL~~~P~iLLlDEPts~LD~~t~~~i~~lL~~l~~~~g~tiiliTH~~~~v~~~~d 209 (343)
T TIGR02314 145 QKQRVAIARALASNPKVLLCDEATSALDPATTQSILELLKEINRRLGLTILLITHEMDVVKRICD 209 (343)
T ss_pred HHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCC
Confidence 33344577888889999999999765 444444555555543 236789999999988766543
No 245
>PRK15056 manganese/iron transporter ATP-binding protein; Provisional
Probab=97.38 E-value=0.0016 Score=67.83 Aligned_cols=62 Identities=18% Similarity=0.263 Sum_probs=41.6
Q ss_pred HHHHHHHHHHHhCCceEEEEeCCCCC-CccChHHHHHhhcCC-CCCcEEEEEcCCHHHHHHhCC
Q 047321 197 ESLMKQIQEYITGKKIFLVLDDVWDG-DYKKWDPFFSCLKNG-HHESKILITTHDRSVALQLGS 258 (807)
Q Consensus 197 ~~~~~~l~~~l~~k~~LlVlDdv~~~-~~~~~~~l~~~l~~~-~~gs~IliTTR~~~v~~~~~~ 258 (807)
+...-.+.+.+-.++-++++|++... |......+...+... ..|..||++|++.+....+..
T Consensus 147 ~~qrv~laraL~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~g~tviivsH~~~~~~~~~d 210 (272)
T PRK15056 147 QKKRVFLARAIAQQGQVILLDEPFTGVDVKTEARIISLLRELRDEGKTMLVSTHNLGSVTEFCD 210 (272)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCC
Confidence 33444567777788899999999765 444555565655432 246679999999876555443
No 246
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=97.38 E-value=0.0016 Score=65.31 Aligned_cols=58 Identities=16% Similarity=0.146 Sum_probs=39.8
Q ss_pred HHHHHHHHHhCCceEEEEeCCCCC-CccChHHHHHhhcCC-CCCcEEEEEcCCHHHHHHh
Q 047321 199 LMKQIQEYITGKKIFLVLDDVWDG-DYKKWDPFFSCLKNG-HHESKILITTHDRSVALQL 256 (807)
Q Consensus 199 ~~~~l~~~l~~k~~LlVlDdv~~~-~~~~~~~l~~~l~~~-~~gs~IliTTR~~~v~~~~ 256 (807)
..-.+.+.+-.++-++++|++... |....+.+...+... ..|..||++|++......+
T Consensus 143 qrv~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tiiivtH~~~~~~~~ 202 (214)
T cd03292 143 QRVAIARAIVNSPTILIADEPTGNLDPDTTWEIMNLLKKINKAGTTVVVATHAKELVDTT 202 (214)
T ss_pred HHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHh
Confidence 344466777788889999999765 444455555555442 3467799999998766544
No 247
>PRK10908 cell division protein FtsE; Provisional
Probab=97.38 E-value=0.00054 Score=69.04 Aligned_cols=60 Identities=15% Similarity=0.130 Sum_probs=40.1
Q ss_pred HHHHHHHHHHhCCceEEEEeCCCCC-CccChHHHHHhhcCC-CCCcEEEEEcCCHHHHHHhC
Q 047321 198 SLMKQIQEYITGKKIFLVLDDVWDG-DYKKWDPFFSCLKNG-HHESKILITTHDRSVALQLG 257 (807)
Q Consensus 198 ~~~~~l~~~l~~k~~LlVlDdv~~~-~~~~~~~l~~~l~~~-~~gs~IliTTR~~~v~~~~~ 257 (807)
...-.+.+.+-.++-+++||++... |....+.+...+... ..|..||++|++.+....+.
T Consensus 143 ~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~ 204 (222)
T PRK10908 143 QQRVGIARAVVNKPAVLLADEPTGNLDDALSEGILRLFEEFNRVGVTVLMATHDIGLISRRS 204 (222)
T ss_pred HHHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhC
Confidence 3344466777788899999999665 444444455555432 23667999999988766543
No 248
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=97.38 E-value=0.00082 Score=67.03 Aligned_cols=37 Identities=22% Similarity=0.369 Sum_probs=29.5
Q ss_pred ceEEEEEccCCChHHHHHHHHHcCcccccccceEEEEEe
Q 047321 131 LDVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCV 169 (807)
Q Consensus 131 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~ 169 (807)
.-.++|+|..|+|||||+..+.. .....|+.+++++-
T Consensus 13 ~fr~viIG~sGSGKT~li~~lL~--~~~~~f~~I~l~t~ 49 (241)
T PF04665_consen 13 PFRMVIIGKSGSGKTTLIKSLLY--YLRHKFDHIFLITP 49 (241)
T ss_pred CceEEEECCCCCCHHHHHHHHHH--hhcccCCEEEEEec
Confidence 34788999999999999999887 46677877766643
No 249
>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional
Probab=97.38 E-value=0.00043 Score=74.61 Aligned_cols=129 Identities=18% Similarity=0.153 Sum_probs=73.2
Q ss_pred CceEEEEEccCCChHHHHHHHHHcCcccc-c--ccc------------eEEEEEeCC----CCCH---------------
Q 047321 130 GLDVISLVGLGGIGKTTLAQLAYNNDEVK-R--NFE------------KVIWVCVSN----TFEE--------------- 175 (807)
Q Consensus 130 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~-~--~f~------------~~~wv~~~~----~~~~--------------- 175 (807)
.-.+++|+|++|+|||||.+.++.-.... + .|+ .+.+|.-.. ..++
T Consensus 29 ~Ge~~~llG~sGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~~~~~r~ig~v~Q~~~lfp~~tv~eNi~~~~~~~~~~~ 108 (356)
T PRK11650 29 DGEFIVLVGPSGCGKSTLLRMVAGLERITSGEIWIGGRVVNELEPADRDIAMVFQNYALYPHMSVRENMAYGLKIRGMPK 108 (356)
T ss_pred CCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCCEEEEeCCccccCCCCHHHHHHhHHhhcCCCH
Confidence 34689999999999999999996531110 0 011 122221110 0011
Q ss_pred ---HHHHHHHHHHcCCCC------CCCccHHHHHHHHHHHHhCCceEEEEeCCCCC-CccChHHHHHhhcCC--CCCcEE
Q 047321 176 ---ISVAKAIIEGLGVSA------FGLSEFESLMKQIQEYITGKKIFLVLDDVWDG-DYKKWDPFFSCLKNG--HHESKI 243 (807)
Q Consensus 176 ---~~~~~~i~~~l~~~~------~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~-~~~~~~~l~~~l~~~--~~gs~I 243 (807)
.....++++.++... ......+...-.+.+.+..++-+++||+.... |...-+.+...+..- ..|..|
T Consensus 109 ~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~QRvalARAL~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~ti 188 (356)
T PRK11650 109 AEIEERVAEAARILELEPLLDRKPRELSGGQRQRVAMGRAIVREPAVFLFDEPLSNLDAKLRVQMRLEIQRLHRRLKTTS 188 (356)
T ss_pred HHHHHHHHHHHHHcCChhHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEE
Confidence 112233444444321 11233344455578888899999999999764 433344455554432 236789
Q ss_pred EEEcCCHHHHHHhCC
Q 047321 244 LITTHDRSVALQLGS 258 (807)
Q Consensus 244 liTTR~~~v~~~~~~ 258 (807)
|++|++...+..+..
T Consensus 189 i~vTHd~~ea~~l~D 203 (356)
T PRK11650 189 LYVTHDQVEAMTLAD 203 (356)
T ss_pred EEEeCCHHHHHHhCC
Confidence 999999876655543
No 250
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.37 E-value=0.0012 Score=69.01 Aligned_cols=58 Identities=14% Similarity=0.118 Sum_probs=40.9
Q ss_pred HHHHHHHHHHHhCCceEEEEeCCCCC-CccChHHHHHhhcCC--CCCcEEEEEcCCHHHHH
Q 047321 197 ESLMKQIQEYITGKKIFLVLDDVWDG-DYKKWDPFFSCLKNG--HHESKILITTHDRSVAL 254 (807)
Q Consensus 197 ~~~~~~l~~~l~~k~~LlVlDdv~~~-~~~~~~~l~~~l~~~--~~gs~IliTTR~~~v~~ 254 (807)
+...-.+.+.+..++-++++|++... |......+...+... ..|..||++|++.+...
T Consensus 145 q~qrv~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tilivtH~~~~~~ 205 (279)
T PRK13650 145 QKQRVAIAGAVAMRPKIIILDEATSMLDPEGRLELIKTIKGIRDDYQMTVISITHDLDEVA 205 (279)
T ss_pred HHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHH
Confidence 33444577788889999999999765 444455566665543 23778999999987764
No 251
>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=97.37 E-value=0.0027 Score=69.47 Aligned_cols=118 Identities=21% Similarity=0.306 Sum_probs=75.1
Q ss_pred EEEEEccCCChHHHHHHHHHcCcccccccceEEEEEeCCCCCHHHHHHHHHHHcCCCCCCCccHHHHHHHHHHHHhCCce
Q 047321 133 VISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSNTFEEISVAKAIIEGLGVSAFGLSEFESLMKQIQEYITGKKI 212 (807)
Q Consensus 133 vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~ 212 (807)
++.|.|+-++||||+++.+... ..+. .+++...+......-+. +....+...-..++.
T Consensus 39 i~~i~GpR~~GKTtll~~l~~~--~~~~---~iy~~~~d~~~~~~~l~-----------------d~~~~~~~~~~~~~~ 96 (398)
T COG1373 39 IILILGPRQVGKTTLLKLLIKG--LLEE---IIYINFDDLRLDRIELL-----------------DLLRAYIELKEREKS 96 (398)
T ss_pred EEEEECCccccHHHHHHHHHhh--CCcc---eEEEEecchhcchhhHH-----------------HHHHHHHHhhccCCc
Confidence 9999999999999999777653 2122 45554333221111111 111112222222778
Q ss_pred EEEEeCCCCCCccChHHHHHhhcCCCCCcEEEEEcCCHHHHH-----Hh-CCCceEeCCCCChhhHHHH
Q 047321 213 FLVLDDVWDGDYKKWDPFFSCLKNGHHESKILITTHDRSVAL-----QL-GSIDIIPVKELGEGECWLL 275 (807)
Q Consensus 213 LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~IliTTR~~~v~~-----~~-~~~~~~~l~~L~~~~~~~L 275 (807)
.++||+|.. ...|+.....+.+.++. +|++|+-+..... .. +-...+++.||+..|-..+
T Consensus 97 yifLDEIq~--v~~W~~~lk~l~d~~~~-~v~itgsss~ll~~~~~~~L~GR~~~~~l~PlSF~Efl~~ 162 (398)
T COG1373 97 YIFLDEIQN--VPDWERALKYLYDRGNL-DVLITGSSSSLLSKEISESLAGRGKDLELYPLSFREFLKL 162 (398)
T ss_pred eEEEecccC--chhHHHHHHHHHccccc-eEEEECCchhhhccchhhhcCCCceeEEECCCCHHHHHhh
Confidence 999999965 47899988888877666 8999888754432 22 2245789999999888664
No 252
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=97.37 E-value=0.0019 Score=65.87 Aligned_cols=57 Identities=14% Similarity=0.197 Sum_probs=40.6
Q ss_pred HHHHHHHHHhCCceEEEEeCCCCC-CccChHHHHHhhcCCCCCcEEEEEcCCHHHHHH
Q 047321 199 LMKQIQEYITGKKIFLVLDDVWDG-DYKKWDPFFSCLKNGHHESKILITTHDRSVALQ 255 (807)
Q Consensus 199 ~~~~l~~~l~~k~~LlVlDdv~~~-~~~~~~~l~~~l~~~~~gs~IliTTR~~~v~~~ 255 (807)
..-.+.+.+-.++-+++||++... |....+.+...+.....|..||++|++.+....
T Consensus 145 qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~ 202 (237)
T cd03252 145 QRIAIARALIHNPRILIFDEATSALDYESEHAIMRNMHDICAGRTVIIIAHRLSTVKN 202 (237)
T ss_pred HHHHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHHh
Confidence 344466777778889999999765 555555566666544447789999999887653
No 253
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.37 E-value=0.0012 Score=67.40 Aligned_cols=58 Identities=19% Similarity=0.249 Sum_probs=38.5
Q ss_pred HHHHHHHHhCCceEEEEeCCCCC-CccChHHHHHhhcCC--CCCcEEEEEcCCHHHHHHhC
Q 047321 200 MKQIQEYITGKKIFLVLDDVWDG-DYKKWDPFFSCLKNG--HHESKILITTHDRSVALQLG 257 (807)
Q Consensus 200 ~~~l~~~l~~k~~LlVlDdv~~~-~~~~~~~l~~~l~~~--~~gs~IliTTR~~~v~~~~~ 257 (807)
.-.+.+.+-.++-++++|++.+. |...-+.+...+... ..|..||++|++......+.
T Consensus 143 rv~laral~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~g~tvii~sH~~~~~~~~~ 203 (242)
T cd03295 143 RVGVARALAADPPLLLMDEPFGALDPITRDQLQEEFKRLQQELGKTIVFVTHDIDEAFRLA 203 (242)
T ss_pred HHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhC
Confidence 34466777788889999999664 444444455555543 23677999999987654433
No 254
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=97.37 E-value=0.0088 Score=63.07 Aligned_cols=94 Identities=9% Similarity=0.015 Sum_probs=67.8
Q ss_pred hCCceEEEEeCCCCCCccChHHHHHhhcCCCCCcEEEEEcCCHH-HHHHh-CCCceEeCCCCChhhHHHHHHHHHhccCC
Q 047321 208 TGKKIFLVLDDVWDGDYKKWDPFFSCLKNGHHESKILITTHDRS-VALQL-GSIDIIPVKELGEGECWLLFKQIAFLRRS 285 (807)
Q Consensus 208 ~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~IliTTR~~~-v~~~~-~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~ 285 (807)
.+++-++|+|++..........++..+-.-..++.+|++|.+.. +...+ .-...+.+.++++++..+.+......
T Consensus 105 ~g~~KV~iI~~a~~m~~~AaNaLLKtLEEPp~~~~fiL~t~~~~~llpTI~SRC~~~~~~~~~~~~~~~~L~~~~~~--- 181 (325)
T PRK06871 105 QGGNKVVYIQGAERLTEAAANALLKTLEEPRPNTYFLLQADLSAALLPTIYSRCQTWLIHPPEEQQALDWLQAQSSA--- 181 (325)
T ss_pred cCCceEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhCchHHHhhceEEeCCCCCHHHHHHHHHHHhcc---
Confidence 36677889999977777777888888888777888888877653 33222 22568999999999999888765411
Q ss_pred ccCccchHHHHHHHHHHcCCCHHHH
Q 047321 286 FEDCEKLEPIGRKIASKCKGLPLAA 310 (807)
Q Consensus 286 ~~~~~~~~~~~~~I~~~c~glPLai 310 (807)
. ...+...+..++|.|+.+
T Consensus 182 --~----~~~~~~~~~l~~g~p~~A 200 (325)
T PRK06871 182 --E----ISEILTALRINYGRPLLA 200 (325)
T ss_pred --C----hHHHHHHHHHcCCCHHHH
Confidence 1 112566788999999644
No 255
>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.36 E-value=0.0023 Score=65.66 Aligned_cols=61 Identities=18% Similarity=0.118 Sum_probs=41.7
Q ss_pred HHHHHHHHHHHHhCCceEEEEeCCCCC-CccChHHHHHhhcCCCCCcEEEEEcCCHHHHHHh
Q 047321 196 FESLMKQIQEYITGKKIFLVLDDVWDG-DYKKWDPFFSCLKNGHHESKILITTHDRSVALQL 256 (807)
Q Consensus 196 ~~~~~~~l~~~l~~k~~LlVlDdv~~~-~~~~~~~l~~~l~~~~~gs~IliTTR~~~v~~~~ 256 (807)
.+...-.+.+.+..++-+++||++... |...-..+...+.....|..||++|++.+.....
T Consensus 146 G~~qrv~laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~~~~~ 207 (246)
T PRK14269 146 GQQQRLCIARALAIKPKLLLLDEPTSALDPISSGVIEELLKELSHNLSMIMVTHNMQQGKRV 207 (246)
T ss_pred HHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHhh
Confidence 344455577788889999999999664 4444445556555443467899999998765443
No 256
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=97.36 E-value=0.0018 Score=65.80 Aligned_cols=58 Identities=21% Similarity=0.180 Sum_probs=40.6
Q ss_pred HHHHHHHHhCCceEEEEeCCCCC-CccChHHHHHhhcCC--CCCcEEEEEcCCHHHHHHhC
Q 047321 200 MKQIQEYITGKKIFLVLDDVWDG-DYKKWDPFFSCLKNG--HHESKILITTHDRSVALQLG 257 (807)
Q Consensus 200 ~~~l~~~l~~k~~LlVlDdv~~~-~~~~~~~l~~~l~~~--~~gs~IliTTR~~~v~~~~~ 257 (807)
.-.+.+.+..++-+++||++... |....+.+...+... ..|..||++|++......+.
T Consensus 161 rl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~~~ 221 (236)
T cd03267 161 RAEIAAALLHEPEILFLDEPTIGLDVVAQENIRNFLKEYNRERGTTVLLTSHYMKDIEALA 221 (236)
T ss_pred HHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEecCHHHHHHhC
Confidence 34466777788899999999765 555555566666543 23667999999988665543
No 257
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=97.36 E-value=0.0019 Score=65.93 Aligned_cols=56 Identities=14% Similarity=0.112 Sum_probs=39.8
Q ss_pred HHHHHHHHHhCCceEEEEeCCCCC-CccChHHHHHhhcCCCCCcEEEEEcCCHHHHH
Q 047321 199 LMKQIQEYITGKKIFLVLDDVWDG-DYKKWDPFFSCLKNGHHESKILITTHDRSVAL 254 (807)
Q Consensus 199 ~~~~l~~~l~~k~~LlVlDdv~~~-~~~~~~~l~~~l~~~~~gs~IliTTR~~~v~~ 254 (807)
..-.+.+.+..++-++++|++... |....+.+...+.....|..||++|++.+...
T Consensus 146 qrv~la~al~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~g~~vi~~sh~~~~~~ 202 (238)
T cd03249 146 QRIAIARALLRNPKILLLDEATSALDAESEKLVQEALDRAMKGRTTIVIAHRLSTIR 202 (238)
T ss_pred HHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHh
Confidence 334466677778889999999765 55555566666654335777999999987765
No 258
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=97.35 E-value=0.0015 Score=66.22 Aligned_cols=60 Identities=23% Similarity=0.248 Sum_probs=40.6
Q ss_pred HHHHHHHHHHhCCceEEEEeCCCCC-CccChHHHHHhhcCC--CCCcEEEEEcCCHHHHHHhC
Q 047321 198 SLMKQIQEYITGKKIFLVLDDVWDG-DYKKWDPFFSCLKNG--HHESKILITTHDRSVALQLG 257 (807)
Q Consensus 198 ~~~~~l~~~l~~k~~LlVlDdv~~~-~~~~~~~l~~~l~~~--~~gs~IliTTR~~~v~~~~~ 257 (807)
...-.+.+.+..++-+++||++... |......+...+... ..|..||++|++......+.
T Consensus 120 ~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~ 182 (230)
T TIGR01184 120 KQRVAIARALSIRPKVLLLDEPFGALDALTRGNLQEELMQIWEEHRVTVLMVTHDVDEALLLS 182 (230)
T ss_pred HHHHHHHHHHHcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhc
Confidence 3344466777788899999999765 555555566666542 23667999999987655443
No 259
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.34 E-value=0.00058 Score=69.70 Aligned_cols=57 Identities=19% Similarity=0.243 Sum_probs=38.0
Q ss_pred HHHHHHHHhCCceEEEEeCCCCC-CccChHHHHHhhcCC--CCCcEEEEEcCCHHHHHHh
Q 047321 200 MKQIQEYITGKKIFLVLDDVWDG-DYKKWDPFFSCLKNG--HHESKILITTHDRSVALQL 256 (807)
Q Consensus 200 ~~~l~~~l~~k~~LlVlDdv~~~-~~~~~~~l~~~l~~~--~~gs~IliTTR~~~v~~~~ 256 (807)
.-.+.+.+-.++-+++||++... |...-..+...+... ..|..||++|++.+.....
T Consensus 144 rl~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~~~~~~ 203 (239)
T cd03296 144 RVALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRRLHDELHVTTVFVTHDQEEALEV 203 (239)
T ss_pred HHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHh
Confidence 34466777778889999999765 444444455555432 2366799999998765443
No 260
>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional
Probab=97.34 E-value=0.0018 Score=70.37 Aligned_cols=128 Identities=18% Similarity=0.168 Sum_probs=72.9
Q ss_pred CceEEEEEccCCChHHHHHHHHHcCcccc-c--cc------------ceEEEEEeCC----CCCHH--------------
Q 047321 130 GLDVISLVGLGGIGKTTLAQLAYNNDEVK-R--NF------------EKVIWVCVSN----TFEEI-------------- 176 (807)
Q Consensus 130 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~-~--~f------------~~~~wv~~~~----~~~~~-------------- 176 (807)
.-.+++|+|++|+|||||++.++.-.... + .| ..+.++.-.. ..++.
T Consensus 28 ~Ge~~~l~G~nGsGKSTLL~~iaGl~~p~~G~I~~~g~~i~~~~~~~~~i~~v~Q~~~l~~~~tv~eni~~~~~~~~~~~ 107 (369)
T PRK11000 28 EGEFVVFVGPSGCGKSTLLRMIAGLEDITSGDLFIGEKRMNDVPPAERGVGMVFQSYALYPHLSVAENMSFGLKLAGAKK 107 (369)
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHhHCCEEEEeCCcccCCCCCHHHHHHhHHhhcCCCH
Confidence 44689999999999999999997532110 0 01 1122222110 01111
Q ss_pred ----HHHHHHHHHcCCCC------CCCccHHHHHHHHHHHHhCCceEEEEeCCCCC-CccChHHHHHhhcCC--CCCcEE
Q 047321 177 ----SVAKAIIEGLGVSA------FGLSEFESLMKQIQEYITGKKIFLVLDDVWDG-DYKKWDPFFSCLKNG--HHESKI 243 (807)
Q Consensus 177 ----~~~~~i~~~l~~~~------~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~-~~~~~~~l~~~l~~~--~~gs~I 243 (807)
+...++++.++... ......+...-.+.+.+..++-+++||+.... |....+.+...+... ..|..|
T Consensus 108 ~~~~~~~~~~l~~lgL~~~~~~~~~~LSgGq~QRvaLAraL~~~P~lLLLDEPts~LD~~~~~~l~~~L~~l~~~~g~tv 187 (369)
T PRK11000 108 EEINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTM 187 (369)
T ss_pred HHHHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHhCCEE
Confidence 11233444444321 11233344455577888889999999999764 444444455555432 236779
Q ss_pred EEEcCCHHHHHHhC
Q 047321 244 LITTHDRSVALQLG 257 (807)
Q Consensus 244 liTTR~~~v~~~~~ 257 (807)
|++|++.+.+..+.
T Consensus 188 I~vTHd~~~~~~~~ 201 (369)
T PRK11000 188 IYVTHDQVEAMTLA 201 (369)
T ss_pred EEEeCCHHHHHHhC
Confidence 99999987665544
No 261
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=97.34 E-value=0.0021 Score=61.94 Aligned_cols=44 Identities=20% Similarity=0.191 Sum_probs=36.7
Q ss_pred CccccccchHHHHHHHHhCCCCCCCCCceEEEEEccCCChHHHHHHHHHc
Q 047321 104 GGVCGRVDEKNELLSKLLCGSSEQQKGLDVISLVGLGGIGKTTLAQLAYN 153 (807)
Q Consensus 104 ~~~vGR~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 153 (807)
.++||-++-++++.-... .++.+-+.|.||+|+||||-+..+++
T Consensus 27 ~dIVGNe~tv~rl~via~------~gnmP~liisGpPG~GKTTsi~~LAr 70 (333)
T KOG0991|consen 27 QDIVGNEDTVERLSVIAK------EGNMPNLIISGPPGTGKTTSILCLAR 70 (333)
T ss_pred HHhhCCHHHHHHHHHHHH------cCCCCceEeeCCCCCchhhHHHHHHH
Confidence 468999998888876655 45788899999999999998888776
No 262
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=97.33 E-value=0.00058 Score=69.40 Aligned_cols=58 Identities=19% Similarity=0.253 Sum_probs=41.0
Q ss_pred HHHHHHHHHhCCceEEEEeCCCCC-CccChHHHHHhhcCC--CCCcEEEEEcCCHHHHHHh
Q 047321 199 LMKQIQEYITGKKIFLVLDDVWDG-DYKKWDPFFSCLKNG--HHESKILITTHDRSVALQL 256 (807)
Q Consensus 199 ~~~~l~~~l~~k~~LlVlDdv~~~-~~~~~~~l~~~l~~~--~~gs~IliTTR~~~v~~~~ 256 (807)
..-.+.+.+..++-+++||++... |....+.+...+... ..|..||++|++.+.+..+
T Consensus 152 qrl~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~sH~~~~~~~~ 212 (233)
T PRK11629 152 QRVAIARALVNNPRLVLADEPTGNLDARNADSIFQLLGELNRLQGTAFLVVTHDLQLAKRM 212 (233)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhh
Confidence 344467777788999999999765 455555566666543 2467899999998876654
No 263
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=97.33 E-value=0.0023 Score=64.46 Aligned_cols=57 Identities=16% Similarity=0.197 Sum_probs=39.2
Q ss_pred HHHHHHHHHhCCceEEEEeCCCCC-CccChHHHHHhhcCC--CCCcEEEEEcCCHHHHHH
Q 047321 199 LMKQIQEYITGKKIFLVLDDVWDG-DYKKWDPFFSCLKNG--HHESKILITTHDRSVALQ 255 (807)
Q Consensus 199 ~~~~l~~~l~~k~~LlVlDdv~~~-~~~~~~~l~~~l~~~--~~gs~IliTTR~~~v~~~ 255 (807)
..-.+.+.+-.++-+++||++... |......+...+... ..|..||++|++.+....
T Consensus 148 qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~~~~~ 207 (221)
T TIGR02211 148 QRVAIARALVNQPSLVLADEPTGNLDNNNAKIIFDLMLELNRELNTSFLVVTHDLELAKK 207 (221)
T ss_pred HHHHHHHHHhCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHhh
Confidence 344466777778889999999765 555555566665533 236679999999877654
No 264
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=97.33 E-value=0.00054 Score=76.98 Aligned_cols=134 Identities=22% Similarity=0.262 Sum_probs=81.7
Q ss_pred CceEEEEEccCCChHHHHHHHHHcCcc-----cc-cccceEEEEEeCC---------------CC-C-HHHHHHHHHHHc
Q 047321 130 GLDVISLVGLGGIGKTTLAQLAYNNDE-----VK-RNFEKVIWVCVSN---------------TF-E-EISVAKAIIEGL 186 (807)
Q Consensus 130 ~~~vi~I~G~gGiGKTtLa~~v~~~~~-----~~-~~f~~~~wv~~~~---------------~~-~-~~~~~~~i~~~l 186 (807)
.-..|+|+|++|+|||||.+.+..... ++ ..--.+.|+.-.. .+ + .....+..+..+
T Consensus 347 ~g~riaiiG~NG~GKSTLlk~l~g~~~~~~G~v~~g~~v~igyf~Q~~~~l~~~~t~~d~l~~~~~~~~e~~~r~~L~~f 426 (530)
T COG0488 347 RGDRIAIVGPNGAGKSTLLKLLAGELGPLSGTVKVGETVKIGYFDQHRDELDPDKTVLEELSEGFPDGDEQEVRAYLGRF 426 (530)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhhhcccCCceEEeCCceEEEEEEehhhhcCccCcHHHHHHhhCccccHHHHHHHHHHc
Confidence 456899999999999999999954211 11 0001122222111 01 0 123344455555
Q ss_pred CCCCC-------CCccHHHHHHHHHHHHhCCceEEEEeCCCCC-CccChHHHHHhhcCCCCCcEEEEEcCCHHHHHHhCC
Q 047321 187 GVSAF-------GLSEFESLMKQIQEYITGKKIFLVLDDVWDG-DYKKWDPFFSCLKNGHHESKILITTHDRSVALQLGS 258 (807)
Q Consensus 187 ~~~~~-------~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~-~~~~~~~l~~~l~~~~~gs~IliTTR~~~v~~~~~~ 258 (807)
+.... .....+...-.+...+..++-+||||++.+. |.+..+.+...|... +|+ ||++|+++.....+.+
T Consensus 427 ~F~~~~~~~~v~~LSGGEk~Rl~La~ll~~~pNvLiLDEPTNhLDi~s~~aLe~aL~~f-~Gt-vl~VSHDr~Fl~~va~ 504 (530)
T COG0488 427 GFTGEDQEKPVGVLSGGEKARLLLAKLLLQPPNLLLLDEPTNHLDIESLEALEEALLDF-EGT-VLLVSHDRYFLDRVAT 504 (530)
T ss_pred CCChHHHhCchhhcCHhHHHHHHHHHHhccCCCEEEEcCCCccCCHHHHHHHHHHHHhC-CCe-EEEEeCCHHHHHhhcc
Confidence 43321 1233444455577777889999999999876 666666677777655 354 9999999998887764
Q ss_pred CceEeCCC
Q 047321 259 IDIIPVKE 266 (807)
Q Consensus 259 ~~~~~l~~ 266 (807)
+++.+.+
T Consensus 505 -~i~~~~~ 511 (530)
T COG0488 505 -RIWLVED 511 (530)
T ss_pred -eEEEEcC
Confidence 4555553
No 265
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=97.33 E-value=0.002 Score=72.50 Aligned_cols=61 Identities=15% Similarity=0.135 Sum_probs=43.6
Q ss_pred HHHHHHHHHHHHhCCceEEEEeCCCCC-CccChHHHHHhhcCCCCCcEEEEEcCCHHHHHHhCC
Q 047321 196 FESLMKQIQEYITGKKIFLVLDDVWDG-DYKKWDPFFSCLKNGHHESKILITTHDRSVALQLGS 258 (807)
Q Consensus 196 ~~~~~~~l~~~l~~k~~LlVlDdv~~~-~~~~~~~l~~~l~~~~~gs~IliTTR~~~v~~~~~~ 258 (807)
.......|.+.|-.++-+|+||++.+. |.+...-+..+|.. .+| .+||+|+++.....+.+
T Consensus 157 G~r~Rv~LA~aL~~~pDlLLLDEPTNHLD~~~i~WLe~~L~~-~~g-tviiVSHDR~FLd~V~t 218 (530)
T COG0488 157 GWRRRVALARALLEEPDLLLLDEPTNHLDLESIEWLEDYLKR-YPG-TVIVVSHDRYFLDNVAT 218 (530)
T ss_pred HHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHh-CCC-cEEEEeCCHHHHHHHhh
Confidence 344556688888899999999999775 33333335555543 445 69999999998877655
No 266
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.32 E-value=0.0014 Score=66.91 Aligned_cols=61 Identities=16% Similarity=0.159 Sum_probs=41.2
Q ss_pred HHHHHHHHHHHhCCceEEEEeCCCCC-CccChHHHHHhhcCC--CCCcEEEEEcCCHHHHHHhC
Q 047321 197 ESLMKQIQEYITGKKIFLVLDDVWDG-DYKKWDPFFSCLKNG--HHESKILITTHDRSVALQLG 257 (807)
Q Consensus 197 ~~~~~~l~~~l~~k~~LlVlDdv~~~-~~~~~~~l~~~l~~~--~~gs~IliTTR~~~v~~~~~ 257 (807)
+...-.+.+.+..++-++++|++... |....+.+...+... ..|..||++|++.+....+.
T Consensus 136 ~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tii~~sH~~~~~~~~~ 199 (241)
T PRK14250 136 EAQRVSIARTLANNPEVLLLDEPTSALDPTSTEIIEELIVKLKNKMNLTVIWITHNMEQAKRIG 199 (241)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeccHHHHHHhC
Confidence 33344567777788899999999765 444455566655543 23677999999988765443
No 267
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=97.32 E-value=0.0037 Score=59.28 Aligned_cols=139 Identities=18% Similarity=0.212 Sum_probs=76.9
Q ss_pred cccchHHHHHHHHhCCCCCCCCCceEEEEEccCCChHHHHHHHHHcC----cccc--------------cccceEEEEEe
Q 047321 108 GRVDEKNELLSKLLCGSSEQQKGLDVISLVGLGGIGKTTLAQLAYNN----DEVK--------------RNFEKVIWVCV 169 (807)
Q Consensus 108 GR~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~----~~~~--------------~~f~~~~wv~~ 169 (807)
|-++..+.|.+.+... .-...+.++|+.|+||+++|..+++. .... ....-..|+.-
T Consensus 1 gq~~~~~~L~~~~~~~-----~l~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~~c~~c~~c~~~~~~~~~d~~~~~~ 75 (162)
T PF13177_consen 1 GQEEIIELLKNLIKSG-----RLPHALLFHGPSGSGKKTLALAFARALLCSNPNEDPCGECRSCRRIEEGNHPDFIIIKP 75 (162)
T ss_dssp S-HHHHHHHHHHHHCT-----C--SEEEEECSTTSSHHHHHHHHHHHHC-TT-CTT--SSSHHHHHHHTT-CTTEEEEET
T ss_pred CcHHHHHHHHHHHHcC-----CcceeEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHhccCcceEEEec
Confidence 4456667777777642 23557899999999999999887541 1110 11222333332
Q ss_pred CCC---CCHHHHHHHHHHHcCCCCCCCccHHHHHHHHHHHHhCCceEEEEeCCCCCCccChHHHHHhhcCCCCCcEEEEE
Q 047321 170 SNT---FEEISVAKAIIEGLGVSAFGLSEFESLMKQIQEYITGKKIFLVLDDVWDGDYKKWDPFFSCLKNGHHESKILIT 246 (807)
Q Consensus 170 ~~~---~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~IliT 246 (807)
... ..++++- .+...+.... ..+++-++|+||+.......+..++..+-....++.+|++
T Consensus 76 ~~~~~~i~i~~ir-~i~~~~~~~~----------------~~~~~KviiI~~ad~l~~~a~NaLLK~LEepp~~~~fiL~ 138 (162)
T PF13177_consen 76 DKKKKSIKIDQIR-EIIEFLSLSP----------------SEGKYKVIIIDEADKLTEEAQNALLKTLEEPPENTYFILI 138 (162)
T ss_dssp TTSSSSBSHHHHH-HHHHHCTSS-----------------TTSSSEEEEEETGGGS-HHHHHHHHHHHHSTTTTEEEEEE
T ss_pred ccccchhhHHHHH-HHHHHHHHHH----------------hcCCceEEEeehHhhhhHHHHHHHHHHhcCCCCCEEEEEE
Confidence 221 2222211 2222222211 1246779999999877778888899999888889999999
Q ss_pred cCCHH-HHHH-hCCCceEeCCCCC
Q 047321 247 THDRS-VALQ-LGSIDIIPVKELG 268 (807)
Q Consensus 247 TR~~~-v~~~-~~~~~~~~l~~L~ 268 (807)
|++.. +... ..-...+.+.+++
T Consensus 139 t~~~~~il~TI~SRc~~i~~~~ls 162 (162)
T PF13177_consen 139 TNNPSKILPTIRSRCQVIRFRPLS 162 (162)
T ss_dssp ES-GGGS-HHHHTTSEEEEE----
T ss_pred ECChHHChHHHHhhceEEecCCCC
Confidence 98764 2222 2224456655543
No 268
>PRK13536 nodulation factor exporter subunit NodI; Provisional
Probab=97.32 E-value=0.00049 Score=73.71 Aligned_cols=60 Identities=22% Similarity=0.213 Sum_probs=41.1
Q ss_pred HHHHHHHHHhCCceEEEEeCCCCC-CccChHHHHHhhcCC-CCCcEEEEEcCCHHHHHHhCC
Q 047321 199 LMKQIQEYITGKKIFLVLDDVWDG-DYKKWDPFFSCLKNG-HHESKILITTHDRSVALQLGS 258 (807)
Q Consensus 199 ~~~~l~~~l~~k~~LlVlDdv~~~-~~~~~~~l~~~l~~~-~~gs~IliTTR~~~v~~~~~~ 258 (807)
..-.+...+..++-+++||++.+. |...-..+...+... ..|..||+||++.+.+..+..
T Consensus 179 qrv~lA~aL~~~P~lLiLDEPt~gLD~~~r~~l~~~l~~l~~~g~tilisSH~l~e~~~~~d 240 (340)
T PRK13536 179 RRLTLARALINDPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFMEEAERLCD 240 (340)
T ss_pred HHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCC
Confidence 344467778889999999999765 444444455555432 247789999999887665443
No 269
>COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=97.32 E-value=0.0042 Score=57.17 Aligned_cols=85 Identities=22% Similarity=0.249 Sum_probs=60.8
Q ss_pred CHHHHHHHHHHHcCCCC------CCCccHHHHHHHHHHHHhCCceEEEEeCCCCC-CccChHHHHHhhc--CCCCCcEEE
Q 047321 174 EEISVAKAIIEGLGVSA------FGLSEFESLMKQIQEYITGKKIFLVLDDVWDG-DYKKWDPFFSCLK--NGHHESKIL 244 (807)
Q Consensus 174 ~~~~~~~~i~~~l~~~~------~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~-~~~~~~~l~~~l~--~~~~gs~Il 244 (807)
+.....+..++.++... ......++..-.|.+.+...+-+++-|+.... |...-+++.+.+- ....|+..|
T Consensus 122 ~~~~~A~~lL~~vGLg~Rl~HyP~qLSGGEQQRVAiARAfa~~P~vLfADEPTGNLD~~Tg~~iaDLlF~lnre~G~TlV 201 (228)
T COG4181 122 DSRAGAKALLEAVGLGKRLTHYPAQLSGGEQQRVALARAFAGRPDVLFADEPTGNLDRATGDKIADLLFALNRERGTTLV 201 (228)
T ss_pred cHHHHHHHHHHHhCcccccccCccccCchHHHHHHHHHHhcCCCCEEeccCCCCCcchhHHHHHHHHHHHHhhhcCceEE
Confidence 44556777788777542 33456677778899999999999999998654 3334444544433 346789999
Q ss_pred EEcCCHHHHHHhCC
Q 047321 245 ITTHDRSVALQLGS 258 (807)
Q Consensus 245 iTTR~~~v~~~~~~ 258 (807)
+.|+++.+|..|.-
T Consensus 202 lVTHD~~LA~Rc~R 215 (228)
T COG4181 202 LVTHDPQLAARCDR 215 (228)
T ss_pred EEeCCHHHHHhhhh
Confidence 99999999988754
No 270
>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=97.32 E-value=0.0025 Score=65.39 Aligned_cols=59 Identities=17% Similarity=0.137 Sum_probs=38.7
Q ss_pred HHHHHHHHHhCCceEEEEeCCCCC-CccChHHHHHhhcCC-CCCcEEEEEcCCHHHHHHhC
Q 047321 199 LMKQIQEYITGKKIFLVLDDVWDG-DYKKWDPFFSCLKNG-HHESKILITTHDRSVALQLG 257 (807)
Q Consensus 199 ~~~~l~~~l~~k~~LlVlDdv~~~-~~~~~~~l~~~l~~~-~~gs~IliTTR~~~v~~~~~ 257 (807)
..-.+.+.+-..+-++++|++... |......+...+... ..|..||++|++......+.
T Consensus 146 qrv~laral~~~p~illlDEPts~LD~~~~~~l~~~l~~l~~~~~tIIiiSHd~~~~~~~a 206 (255)
T cd03236 146 QRVAIAAALARDADFYFFDEPSSYLDIKQRLNAARLIRELAEDDNYVLVVEHDLAVLDYLS 206 (255)
T ss_pred HHHHHHHHHHhCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhC
Confidence 344466667777889999999765 444444444544432 23667999999988776543
No 271
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=97.31 E-value=0.0022 Score=63.77 Aligned_cols=58 Identities=24% Similarity=0.239 Sum_probs=40.2
Q ss_pred HHHHHHHHHHHhCCceEEEEeCCCCC-CccChHHHHHhhcCC-CCCcEEEEEcCCHHHHH
Q 047321 197 ESLMKQIQEYITGKKIFLVLDDVWDG-DYKKWDPFFSCLKNG-HHESKILITTHDRSVAL 254 (807)
Q Consensus 197 ~~~~~~l~~~l~~k~~LlVlDdv~~~-~~~~~~~l~~~l~~~-~~gs~IliTTR~~~v~~ 254 (807)
+...-.+.+.+..++-+++||++... |....+.+...+... ..|..||++|++.....
T Consensus 139 ~~qr~~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~ 198 (206)
T TIGR03608 139 EQQRVALARAILKDPPLILADEPTGSLDPKNRDEVLDLLLELNDEGKTIIIVTHDPEVAK 198 (206)
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCcCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHh
Confidence 33344567778889999999999765 455555566655432 24678999999987654
No 272
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=97.31 E-value=0.0033 Score=58.51 Aligned_cols=125 Identities=18% Similarity=0.250 Sum_probs=69.8
Q ss_pred CceEEEEEccCCChHHHHHHHHHcCcccccccceEEEEEe-------------CCCC-----------------------
Q 047321 130 GLDVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCV-------------SNTF----------------------- 173 (807)
Q Consensus 130 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~-------------~~~~----------------------- 173 (807)
.-.+++|+|++|+||+||...|+.- ...-.+.+|++- |--|
T Consensus 24 ~ge~vAi~GpSGaGKSTLLnLIAGF---~~P~~G~i~i~g~d~t~~~P~~RPVSmlFQEnNLFaHLtV~qNigLGl~P~L 100 (231)
T COG3840 24 AGEIVAILGPSGAGKSTLLNLIAGF---ETPASGEILINGVDHTASPPAERPVSMLFQENNLFAHLTVAQNIGLGLSPGL 100 (231)
T ss_pred CCcEEEEECCCCccHHHHHHHHHhc---cCCCCceEEEcCeecCcCCcccCChhhhhhccccchhhhhhhhhcccCCccc
Confidence 4578999999999999999999752 112234555531 1000
Q ss_pred ----CHHHHHHHHHHHcCCCC------CCCccHHHHHHHHHHHHhCCceEEEEeCCCCC-CccChHHHHHhhcC--CCCC
Q 047321 174 ----EEISVAKAIIEGLGVSA------FGLSEFESLMKQIQEYITGKKIFLVLDDVWDG-DYKKWDPFFSCLKN--GHHE 240 (807)
Q Consensus 174 ----~~~~~~~~i~~~l~~~~------~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~-~~~~~~~l~~~l~~--~~~g 240 (807)
...+-...++.+.+... ......+.....+.+.+-..+-++.||+.... ++.--.++.....+ ...+
T Consensus 101 kL~a~~r~~v~~aa~~vGl~~~~~RLP~~LSGGqRQRvALARclvR~~PilLLDEPFsALdP~LR~eMl~Lv~~l~~E~~ 180 (231)
T COG3840 101 KLNAEQREKVEAAAAQVGLAGFLKRLPGELSGGQRQRVALARCLVREQPILLLDEPFSALDPALRAEMLALVSQLCDERK 180 (231)
T ss_pred ccCHHHHHHHHHHHHHhChhhHhhhCccccCchHHHHHHHHHHHhccCCeEEecCchhhcCHHHHHHHHHHHHHHHHhhC
Confidence 01223344555554431 11233344445577777677777889998764 33333333333222 2345
Q ss_pred cEEEEEcCCHHHHHHhC
Q 047321 241 SKILITTHDRSVALQLG 257 (807)
Q Consensus 241 s~IliTTR~~~v~~~~~ 257 (807)
-.+++.|+..+-+..+.
T Consensus 181 ~TllmVTH~~~Da~~ia 197 (231)
T COG3840 181 MTLLMVTHHPEDAARIA 197 (231)
T ss_pred CEEEEEeCCHHHHHHhh
Confidence 56888888765554443
No 273
>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional
Probab=97.31 E-value=0.0031 Score=70.01 Aligned_cols=125 Identities=16% Similarity=0.147 Sum_probs=71.6
Q ss_pred CceEEEEEccCCChHHHHHHHHHcCcccccccceEEEE-------E----eCCCCCHHH------------------HHH
Q 047321 130 GLDVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWV-------C----VSNTFEEIS------------------VAK 180 (807)
Q Consensus 130 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv-------~----~~~~~~~~~------------------~~~ 180 (807)
.-.+++|+|++|+|||||++.++.-... ..+.+++ . .....++.+ ...
T Consensus 49 ~GEivgIiGpNGSGKSTLLkiLaGLl~P---~sGeI~I~G~~~~i~~~~~l~~~lTV~EnL~l~~~~~~~~~~e~~e~i~ 125 (549)
T PRK13545 49 EGEIVGIIGLNGSGKSTLSNLIAGVTMP---NKGTVDIKGSAALIAISSGLNGQLTGIENIELKGLMMGLTKEKIKEIIP 125 (549)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCCCC---CceEEEECCEeeeEEeccccCCCCcHHHHHHhhhhhcCCCHHHHHHHHH
Confidence 4569999999999999999999863211 1111111 1 111112111 111
Q ss_pred HHHHHcCCCC------CCCccHHHHHHHHHHHHhCCceEEEEeCCCCC-CccChHHHHHhhcCC-CCCcEEEEEcCCHHH
Q 047321 181 AIIEGLGVSA------FGLSEFESLMKQIQEYITGKKIFLVLDDVWDG-DYKKWDPFFSCLKNG-HHESKILITTHDRSV 252 (807)
Q Consensus 181 ~i~~~l~~~~------~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~-~~~~~~~l~~~l~~~-~~gs~IliTTR~~~v 252 (807)
.+++.++... ......+...-.+.+.+...+-+++||++... |......+...+... ..|..||++|++...
T Consensus 126 elLe~lgL~~~ld~~~~~LSGGQrQRVaLArAL~~~P~LLLLDEPTsgLD~~sr~~LlelL~el~~~G~TIIIVSHdl~~ 205 (549)
T PRK13545 126 EIIEFADIGKFIYQPVKTYSSGMKSRLGFAISVHINPDILVIDEALSVGDQTFTKKCLDKMNEFKEQGKTIFFISHSLSQ 205 (549)
T ss_pred HHHHHcCChhHhhCCcccCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHhCCCEEEEEECCHHH
Confidence 2333333321 11222333344577778888999999999764 444444555555432 346789999999876
Q ss_pred HHHhC
Q 047321 253 ALQLG 257 (807)
Q Consensus 253 ~~~~~ 257 (807)
...+.
T Consensus 206 i~~l~ 210 (549)
T PRK13545 206 VKSFC 210 (549)
T ss_pred HHHhC
Confidence 65543
No 274
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=97.31 E-value=0.0019 Score=76.75 Aligned_cols=121 Identities=16% Similarity=0.239 Sum_probs=70.7
Q ss_pred CccccccchHHHHHHHHhCCCC---CCCCCceEEEEEccCCChHHHHHHHHHcCcccccccceEEEEEeCCCCCHHHHHH
Q 047321 104 GGVCGRVDEKNELLSKLLCGSS---EQQKGLDVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSNTFEEISVAK 180 (807)
Q Consensus 104 ~~~vGR~~~~~~l~~~L~~~~~---~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~ 180 (807)
..++|.++.++.+...+..... ..+....++.++|+.|+|||+||+.++.. . +...+.++.+...+...
T Consensus 454 ~~v~GQ~~ai~~l~~~i~~~~~g~~~~~~p~~~~lf~Gp~GvGKT~lA~~la~~--l---~~~~~~~d~se~~~~~~--- 525 (731)
T TIGR02639 454 AKIFGQDEAIDSLVSSIKRSRAGLGNPNKPVGSFLFTGPTGVGKTELAKQLAEA--L---GVHLERFDMSEYMEKHT--- 525 (731)
T ss_pred cceeCcHHHHHHHHHHHHHHhcCCCCCCCCceeEEEECCCCccHHHHHHHHHHH--h---cCCeEEEeCchhhhccc---
Confidence 3578888888888888764211 00223457899999999999999999873 2 22234455443222111
Q ss_pred HHHHHcCCC--CCCCccHHHHHHHHHHHHhCC-ceEEEEeCCCCCCccChHHHHHhhcCC
Q 047321 181 AIIEGLGVS--AFGLSEFESLMKQIQEYITGK-KIFLVLDDVWDGDYKKWDPFFSCLKNG 237 (807)
Q Consensus 181 ~i~~~l~~~--~~~~~~~~~~~~~l~~~l~~k-~~LlVlDdv~~~~~~~~~~l~~~l~~~ 237 (807)
+...++.. ..+...... +.+.++.+ .-+++||++...+...+..+...+..+
T Consensus 526 -~~~lig~~~gyvg~~~~~~----l~~~~~~~p~~VvllDEieka~~~~~~~Ll~~ld~g 580 (731)
T TIGR02639 526 -VSRLIGAPPGYVGFEQGGL----LTEAVRKHPHCVLLLDEIEKAHPDIYNILLQVMDYA 580 (731)
T ss_pred -HHHHhcCCCCCcccchhhH----HHHHHHhCCCeEEEEechhhcCHHHHHHHHHhhccC
Confidence 11112211 112222222 33334334 459999999877777777777777654
No 275
>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional
Probab=97.30 E-value=0.00055 Score=73.56 Aligned_cols=63 Identities=16% Similarity=0.130 Sum_probs=43.7
Q ss_pred cHHHHHHHHHHHHhCCceEEEEeCCCCC-CccChHHHHHhhcCC--CCCcEEEEEcCCHHHHHHhC
Q 047321 195 EFESLMKQIQEYITGKKIFLVLDDVWDG-DYKKWDPFFSCLKNG--HHESKILITTHDRSVALQLG 257 (807)
Q Consensus 195 ~~~~~~~~l~~~l~~k~~LlVlDdv~~~-~~~~~~~l~~~l~~~--~~gs~IliTTR~~~v~~~~~ 257 (807)
..+...-.+.+.+-.++-+++||++... |....+.+...+..- ..|..||++|++...+..+.
T Consensus 139 gGq~QRVaLARaL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~e~~~la 204 (351)
T PRK11432 139 GGQQQRVALARALILKPKVLLFDEPLSNLDANLRRSMREKIRELQQQFNITSLYVTHDQSEAFAVS 204 (351)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhC
Confidence 3344455578888889999999998664 444555555555432 33678999999988776554
No 276
>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.
Probab=97.30 E-value=0.0021 Score=68.01 Aligned_cols=58 Identities=22% Similarity=0.230 Sum_probs=39.8
Q ss_pred HHHHHHHHhCCceEEEEeCCCCC-CccChHHHHHhhcCC-CCCcEEEEEcCCHHHHHHhC
Q 047321 200 MKQIQEYITGKKIFLVLDDVWDG-DYKKWDPFFSCLKNG-HHESKILITTHDRSVALQLG 257 (807)
Q Consensus 200 ~~~l~~~l~~k~~LlVlDdv~~~-~~~~~~~l~~~l~~~-~~gs~IliTTR~~~v~~~~~ 257 (807)
.-.+.+.+..++-+++||++... |...-..+...+... ..|..||++|++...+..+.
T Consensus 143 rv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~til~~sH~~~~~~~~~ 202 (303)
T TIGR01288 143 RLTLARALINDPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFMEEAERLC 202 (303)
T ss_pred HHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhC
Confidence 34467777889999999999765 444444455555432 34678999999988766544
No 277
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=97.29 E-value=0.0029 Score=64.74 Aligned_cols=60 Identities=17% Similarity=0.176 Sum_probs=41.8
Q ss_pred HHHHHHHHHHHhCCceEEEEeCCCCC-CccChHHHHHhhcCC-CCCcEEEEEcCCHHHHHHh
Q 047321 197 ESLMKQIQEYITGKKIFLVLDDVWDG-DYKKWDPFFSCLKNG-HHESKILITTHDRSVALQL 256 (807)
Q Consensus 197 ~~~~~~l~~~l~~k~~LlVlDdv~~~-~~~~~~~l~~~l~~~-~~gs~IliTTR~~~v~~~~ 256 (807)
+...-.+.+.+..++-+++||++... |....+.+...+... ..|..||++|++.+.....
T Consensus 149 ~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~vsH~~~~~~~~ 210 (243)
T TIGR01978 149 EKKRNEILQMALLEPKLAILDEIDSGLDIDALKIVAEGINRLREPDRSFLIITHYQRLLNYI 210 (243)
T ss_pred HHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCcEEEEEEecHHHHHhh
Confidence 33444567777888999999999765 555555566665543 2467799999998877654
No 278
>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional
Probab=97.29 E-value=0.0022 Score=68.95 Aligned_cols=61 Identities=16% Similarity=0.176 Sum_probs=42.7
Q ss_pred HHHHHHHHHHHhCCceEEEEeCCCCC-CccChHHHHHhhcCC--CCCcEEEEEcCCHHHHHHhC
Q 047321 197 ESLMKQIQEYITGKKIFLVLDDVWDG-DYKKWDPFFSCLKNG--HHESKILITTHDRSVALQLG 257 (807)
Q Consensus 197 ~~~~~~l~~~l~~k~~LlVlDdv~~~-~~~~~~~l~~~l~~~--~~gs~IliTTR~~~v~~~~~ 257 (807)
+...-.+.+.+..++-+++||++... |......+...+... ..|..||++|++.+.+..+.
T Consensus 145 q~qRv~lAraL~~~p~iLlLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiilvtH~~~~i~~~~ 208 (343)
T PRK11153 145 QKQRVAIARALASNPKVLLCDEATSALDPATTRSILELLKDINRELGLTIVLITHEMDVVKRIC 208 (343)
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhC
Confidence 33444577778888999999999765 555555566666543 23678999999988766544
No 279
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.29 E-value=0.002 Score=65.89 Aligned_cols=61 Identities=11% Similarity=0.141 Sum_probs=41.5
Q ss_pred HHHHHHHHHHHhCCceEEEEeCCCCC-CccChHHHHHhhcCC--CCCcEEEEEcCCHHHHHHhC
Q 047321 197 ESLMKQIQEYITGKKIFLVLDDVWDG-DYKKWDPFFSCLKNG--HHESKILITTHDRSVALQLG 257 (807)
Q Consensus 197 ~~~~~~l~~~l~~k~~LlVlDdv~~~-~~~~~~~l~~~l~~~--~~gs~IliTTR~~~v~~~~~ 257 (807)
+...-.+.+.+...+-+++||++... |......+...+... ..|..||++|++.+.+..+.
T Consensus 149 ~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~~~~~~~ 212 (241)
T cd03256 149 QQQRVAIARALMQQPKLILADEPVASLDPASSRQVMDLLKRINREEGITVIVSLHQVDLAREYA 212 (241)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhC
Confidence 33344466777788889999999765 455555566666543 23667999999987766443
No 280
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=97.29 E-value=0.0028 Score=64.18 Aligned_cols=58 Identities=19% Similarity=0.224 Sum_probs=39.9
Q ss_pred HHHHHHHHHHhCCceEEEEeCCCCC-CccChHHHHHhhcCC--CCCcEEEEEcCCHHHHHH
Q 047321 198 SLMKQIQEYITGKKIFLVLDDVWDG-DYKKWDPFFSCLKNG--HHESKILITTHDRSVALQ 255 (807)
Q Consensus 198 ~~~~~l~~~l~~k~~LlVlDdv~~~-~~~~~~~l~~~l~~~--~~gs~IliTTR~~~v~~~ 255 (807)
...-.+.+.+..++-+++||++... |....+.+...+... ..|..||++|++......
T Consensus 152 ~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~ 212 (228)
T PRK10584 152 QQRVALARAFNGRPDVLFADEPTGNLDRQTGDKIADLLFSLNREHGTTLILVTHDLQLAAR 212 (228)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHh
Confidence 3344466777778889999999765 555555566666543 236679999999876643
No 281
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.29 E-value=0.0022 Score=66.70 Aligned_cols=59 Identities=19% Similarity=0.190 Sum_probs=39.7
Q ss_pred HHHHHHHHHHHHhCCceEEEEeCCCCC-CccChHHHHHhhcCC--CCCcEEEEEcCCHHHHH
Q 047321 196 FESLMKQIQEYITGKKIFLVLDDVWDG-DYKKWDPFFSCLKNG--HHESKILITTHDRSVAL 254 (807)
Q Consensus 196 ~~~~~~~l~~~l~~k~~LlVlDdv~~~-~~~~~~~l~~~l~~~--~~gs~IliTTR~~~v~~ 254 (807)
.+...-.+.+.+-.++-+++||++... |...-..+...+... ..|..||++|++...+.
T Consensus 146 G~~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tiiivtH~~~~~~ 207 (269)
T PRK13648 146 GQKQRVAIAGVLALNPSVIILDEATSMLDPDARQNLLDLVRKVKSEHNITIISITHDLSEAM 207 (269)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCchHHh
Confidence 334444567777888899999999765 444444555555442 23677999999877664
No 282
>PRK11144 modC molybdate transporter ATP-binding protein; Provisional
Probab=97.29 E-value=0.003 Score=68.28 Aligned_cols=129 Identities=18% Similarity=0.213 Sum_probs=73.4
Q ss_pred CceEEEEEccCCChHHHHHHHHHcCcccc-c--cc------------------ceEEEEEeC----CCCCHH--------
Q 047321 130 GLDVISLVGLGGIGKTTLAQLAYNNDEVK-R--NF------------------EKVIWVCVS----NTFEEI-------- 176 (807)
Q Consensus 130 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~-~--~f------------------~~~~wv~~~----~~~~~~-------- 176 (807)
.-.+++|+|++|+|||||++.++.-.... + .+ ..+.++.-. ...++.
T Consensus 23 ~Ge~~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~ 102 (352)
T PRK11144 23 AQGITAIFGRSGAGKTSLINAISGLTRPQKGRIVLNGRVLFDAEKGICLPPEKRRIGYVFQDARLFPHYKVRGNLRYGMA 102 (352)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccccchhhCCEEEEcCCcccCCCCcHHHHHHhhhh
Confidence 34699999999999999999997532110 0 00 011122100 001111
Q ss_pred ----HHHHHHHHHcCCCC------CCCccHHHHHHHHHHHHhCCceEEEEeCCCCC-CccChHHHHHhhcCC--CCCcEE
Q 047321 177 ----SVAKAIIEGLGVSA------FGLSEFESLMKQIQEYITGKKIFLVLDDVWDG-DYKKWDPFFSCLKNG--HHESKI 243 (807)
Q Consensus 177 ----~~~~~i~~~l~~~~------~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~-~~~~~~~l~~~l~~~--~~gs~I 243 (807)
+...++++.++... ......+...-.+.+.+..++-+++||+.... |......+...+... ..|..|
T Consensus 103 ~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qRvalaraL~~~p~llLLDEPts~LD~~~~~~l~~~L~~l~~~~g~ti 182 (352)
T PRK11144 103 KSMVAQFDKIVALLGIEPLLDRYPGSLSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRKRELLPYLERLAREINIPI 182 (352)
T ss_pred hhhHHHHHHHHHHcCCchhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeE
Confidence 12233455554431 11223344455577888889999999999764 444444555555432 236679
Q ss_pred EEEcCCHHHHHHhCC
Q 047321 244 LITTHDRSVALQLGS 258 (807)
Q Consensus 244 liTTR~~~v~~~~~~ 258 (807)
|++|++...+..+..
T Consensus 183 i~vTHd~~~~~~~~d 197 (352)
T PRK11144 183 LYVSHSLDEILRLAD 197 (352)
T ss_pred EEEecCHHHHHHhCC
Confidence 999999876655443
No 283
>PRK10851 sulfate/thiosulfate transporter subunit; Provisional
Probab=97.29 E-value=0.00084 Score=72.32 Aligned_cols=63 Identities=14% Similarity=0.180 Sum_probs=43.8
Q ss_pred HHHHHHHHHHHHhCCceEEEEeCCCCC-CccChHHHHHhhcCC--CCCcEEEEEcCCHHHHHHhCC
Q 047321 196 FESLMKQIQEYITGKKIFLVLDDVWDG-DYKKWDPFFSCLKNG--HHESKILITTHDRSVALQLGS 258 (807)
Q Consensus 196 ~~~~~~~l~~~l~~k~~LlVlDdv~~~-~~~~~~~l~~~l~~~--~~gs~IliTTR~~~v~~~~~~ 258 (807)
.+...-.+.+.+..++-+++||+.... |......+...+... ..|..||++|++...+..+..
T Consensus 140 Gq~QRvalArAL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tii~vTHd~~ea~~~~D 205 (353)
T PRK10851 140 GQKQRVALARALAVEPQILLLDEPFGALDAQVRKELRRWLRQLHEELKFTSVFVTHDQEEAMEVAD 205 (353)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCC
Confidence 344455577888889999999999665 444445555555432 336789999999987766554
No 284
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=97.28 E-value=0.0028 Score=62.57 Aligned_cols=52 Identities=15% Similarity=0.150 Sum_probs=35.1
Q ss_pred HHHHHHHHHhCCceEEEEeCCCCC-CccChHHHHHhhcCC-CCCcEEEEEcCCH
Q 047321 199 LMKQIQEYITGKKIFLVLDDVWDG-DYKKWDPFFSCLKNG-HHESKILITTHDR 250 (807)
Q Consensus 199 ~~~~l~~~l~~k~~LlVlDdv~~~-~~~~~~~l~~~l~~~-~~gs~IliTTR~~ 250 (807)
..-.+.+.+-.++-++++|++.+. |......+...+... ..|..||++|++.
T Consensus 134 qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sH~~ 187 (198)
T TIGR01189 134 RRLALARLWLSRAPLWILDEPTTALDKAGVALLAGLLRAHLARGGIVLLTTHQD 187 (198)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEEccc
Confidence 344467777888999999999765 444444555555432 3466799999875
No 285
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.28 E-value=0.0027 Score=65.95 Aligned_cols=61 Identities=18% Similarity=0.128 Sum_probs=41.4
Q ss_pred HHHHHHHHHHHHhCCceEEEEeCCCCC-CccChHHHHHhhcCC--CCCcEEEEEcCCHHHHHHh
Q 047321 196 FESLMKQIQEYITGKKIFLVLDDVWDG-DYKKWDPFFSCLKNG--HHESKILITTHDRSVALQL 256 (807)
Q Consensus 196 ~~~~~~~l~~~l~~k~~LlVlDdv~~~-~~~~~~~l~~~l~~~--~~gs~IliTTR~~~v~~~~ 256 (807)
.+...-.+.+.+-.++-+++||++... |......+...+... ..|..||++|++.+....+
T Consensus 164 Gq~qrv~lAral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiii~tH~~~~~~~~ 227 (269)
T cd03294 164 GMQQRVGLARALAVDPDILLMDEAFSALDPLIRREMQDELLRLQAELQKTIVFITHDLDEALRL 227 (269)
T ss_pred HHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHh
Confidence 333444577788889999999999765 444555566655443 2367899999998765443
No 286
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=97.28 E-value=0.0026 Score=65.58 Aligned_cols=59 Identities=17% Similarity=0.254 Sum_probs=40.3
Q ss_pred HHHHHHHHHhCCceEEEEeCCCCC-CccChHHHHHhhcCC--CCCcEEEEEcCCHHHHHHhC
Q 047321 199 LMKQIQEYITGKKIFLVLDDVWDG-DYKKWDPFFSCLKNG--HHESKILITTHDRSVALQLG 257 (807)
Q Consensus 199 ~~~~l~~~l~~k~~LlVlDdv~~~-~~~~~~~l~~~l~~~--~~gs~IliTTR~~~v~~~~~ 257 (807)
..-.+.+.+..++-++++|++.+. |...-..+...+... ..|..||++|++...+..+.
T Consensus 160 qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~~~tii~~sH~~~~~~~~~ 221 (255)
T PRK11300 160 RRLEIARCMVTQPEILMLDEPAAGLNPKETKELDELIAELRNEHNVTVLLIEHDMKLVMGIS 221 (255)
T ss_pred HHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHHHHHHhC
Confidence 344466777888999999999765 444444555555432 23678999999988765543
No 287
>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein.
Probab=97.28 E-value=0.00062 Score=69.37 Aligned_cols=58 Identities=21% Similarity=0.284 Sum_probs=40.2
Q ss_pred HHHHHHHHhCCceEEEEeCCCCC-CccChHHHHHhhcCCC--CCcEEEEEcCCHHHHHHhC
Q 047321 200 MKQIQEYITGKKIFLVLDDVWDG-DYKKWDPFFSCLKNGH--HESKILITTHDRSVALQLG 257 (807)
Q Consensus 200 ~~~l~~~l~~k~~LlVlDdv~~~-~~~~~~~l~~~l~~~~--~gs~IliTTR~~~v~~~~~ 257 (807)
.-.+.+.+..++-++++|++... |....+.+...+.... .|..||++|++...+..+.
T Consensus 138 rl~laral~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tvli~sH~~~~~~~~~ 198 (237)
T TIGR00968 138 RVALARALAVEPQVLLLDEPFGALDAKVRKELRSWLRKLHDEVHVTTVFVTHDQEEAMEVA 198 (237)
T ss_pred HHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhc
Confidence 34466777788899999999665 5555566666665432 2678999999988655433
No 288
>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional
Probab=97.27 E-value=0.0039 Score=64.27 Aligned_cols=61 Identities=18% Similarity=0.131 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHHhCCceEEEEeCCCCC-CccChHHHHHhhcCC--CCCcEEEEEcCCHHHHHHh
Q 047321 196 FESLMKQIQEYITGKKIFLVLDDVWDG-DYKKWDPFFSCLKNG--HHESKILITTHDRSVALQL 256 (807)
Q Consensus 196 ~~~~~~~l~~~l~~k~~LlVlDdv~~~-~~~~~~~l~~~l~~~--~~gs~IliTTR~~~v~~~~ 256 (807)
.+...-.+.+.+..++-+++||++... |...-..+...+... ..|..||++|++.+....+
T Consensus 144 Gq~qrv~laral~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~~~~~g~til~~sH~~~~~~~~ 207 (254)
T PRK10418 144 GMLQRMMIALALLCEAPFIIADEPTTDLDVVAQARILDLLESIVQKRALGMLLVTHDMGVVARL 207 (254)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHh
Confidence 333444577778888999999999764 443434455555432 2367799999998765543
No 289
>PRK14265 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.27 E-value=0.0027 Score=66.10 Aligned_cols=67 Identities=15% Similarity=0.032 Sum_probs=45.3
Q ss_pred HHHHHHHHHHHhCCceEEEEeCCCCC-CccChHHHHHhhcCCCCCcEEEEEcCCHHHHHHhCCCceEeC
Q 047321 197 ESLMKQIQEYITGKKIFLVLDDVWDG-DYKKWDPFFSCLKNGHHESKILITTHDRSVALQLGSIDIIPV 264 (807)
Q Consensus 197 ~~~~~~l~~~l~~k~~LlVlDdv~~~-~~~~~~~l~~~l~~~~~gs~IliTTR~~~v~~~~~~~~~~~l 264 (807)
+...-.+.+.+..++-+++||++... |....+.+...+.....+..||++|++......+.. +.+.+
T Consensus 166 q~qrv~LAraL~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tiii~sH~~~~~~~~~d-~i~~l 233 (274)
T PRK14265 166 QQQRLCIARAIAMKPDVLLMDEPCSALDPISTRQVEELCLELKEQYTIIMVTHNMQQASRVAD-WTAFF 233 (274)
T ss_pred HHHHHHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCC-EEEEE
Confidence 33344567777888999999999765 555555566666544345679999999887765543 34444
No 290
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.27 E-value=0.0031 Score=62.42 Aligned_cols=122 Identities=17% Similarity=0.217 Sum_probs=62.7
Q ss_pred CceEEEEEccCCChHHHHHHHHHcCcc---c-cc--------------ccc-eEEEEEeCCCCCH-HHHHHHHHHH--c-
Q 047321 130 GLDVISLVGLGGIGKTTLAQLAYNNDE---V-KR--------------NFE-KVIWVCVSNTFEE-ISVAKAIIEG--L- 186 (807)
Q Consensus 130 ~~~vi~I~G~gGiGKTtLa~~v~~~~~---~-~~--------------~f~-~~~wv~~~~~~~~-~~~~~~i~~~--l- 186 (807)
.-.+++|+|++|+|||||++.+..-.. . .. .+. .+.++.-...+.. ..+.+.+... .
T Consensus 32 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~G~i~i~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~ 111 (202)
T cd03233 32 PGEMVLVLGRPGSGCSTLLKALANRTEGNVSVEGDIHYNGIPYKEFAEKYPGEIIYVSEEDVHFPTLTVRETLDFALRCK 111 (202)
T ss_pred CCcEEEEECCCCCCHHHHHHHhcccCCCCCCcceEEEECCEECccchhhhcceEEEEecccccCCCCcHHHHHhhhhhhc
Confidence 457999999999999999999876322 0 00 011 1222221111111 1222222211 1
Q ss_pred CCCC-CCCccHHHHHHHHHHHHhCCceEEEEeCCCCC-CccChHHHHHhhcCC--CCCcE-EEEEcCCHH
Q 047321 187 GVSA-FGLSEFESLMKQIQEYITGKKIFLVLDDVWDG-DYKKWDPFFSCLKNG--HHESK-ILITTHDRS 251 (807)
Q Consensus 187 ~~~~-~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~-~~~~~~~l~~~l~~~--~~gs~-IliTTR~~~ 251 (807)
.... ......+...-.+.+.+-.++-++++|+.... |...-+.+...+... ..+.. ||+|++..+
T Consensus 112 ~~~~~~~LS~Ge~qrl~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~~t~ii~~~h~~~ 181 (202)
T cd03233 112 GNEFVRGISGGERKRVSIAEALVSRASVLCWDNSTRGLDSSTALEILKCIRTMADVLKTTTFVSLYQASD 181 (202)
T ss_pred cccchhhCCHHHHHHHHHHHHHhhCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEEcCCHH
Confidence 1111 12233344444577788888889999998664 444344455555432 22444 455566543
No 291
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=97.27 E-value=0.0026 Score=64.94 Aligned_cols=58 Identities=14% Similarity=0.196 Sum_probs=39.5
Q ss_pred HHHHHHHHhCCceEEEEeCCCCC-CccChHHHHHhhcCC-CCCcEEEEEcCCHHHHHHhC
Q 047321 200 MKQIQEYITGKKIFLVLDDVWDG-DYKKWDPFFSCLKNG-HHESKILITTHDRSVALQLG 257 (807)
Q Consensus 200 ~~~l~~~l~~k~~LlVlDdv~~~-~~~~~~~l~~~l~~~-~~gs~IliTTR~~~v~~~~~ 257 (807)
.-.+.+.+-.++-+++||++... |......+...+... ..|..||++|++.+.+..+.
T Consensus 144 rv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~ 203 (240)
T PRK09493 144 RVAIARALAVKPKLMLFDEPTSALDPELRHEVLKVMQDLAEEGMTMVIVTHEIGFAEKVA 203 (240)
T ss_pred HHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhC
Confidence 34466677778889999999765 445555565655432 24667999999988765543
No 292
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=97.27 E-value=0.0024 Score=74.46 Aligned_cols=61 Identities=15% Similarity=0.084 Sum_probs=41.2
Q ss_pred HHHHHHHHHHHHhCCceEEEEeCCCCC-CccChHHHHHhhcCCCCCcEEEEEcCCHHHHHHh
Q 047321 196 FESLMKQIQEYITGKKIFLVLDDVWDG-DYKKWDPFFSCLKNGHHESKILITTHDRSVALQL 256 (807)
Q Consensus 196 ~~~~~~~l~~~l~~k~~LlVlDdv~~~-~~~~~~~l~~~l~~~~~gs~IliTTR~~~v~~~~ 256 (807)
.....-.+.+.+-.++-+|+||+..+. |.+.-..+...+.....|..+|++|+........
T Consensus 613 GQrQrlalARaLl~~P~ILlLDEaTSaLD~~sE~~I~~~L~~~~~~~T~I~IaHRl~ti~~a 674 (709)
T COG2274 613 GQRQRLALARALLSKPKILLLDEATSALDPETEAIILQNLLQILQGRTVIIIAHRLSTIRSA 674 (709)
T ss_pred HHHHHHHHHHHhccCCCEEEEeCcccccCHhHHHHHHHHHHHHhcCCeEEEEEccchHhhhc
Confidence 333344578888999999999999765 4444445677776666666677777766555443
No 293
>PRK08181 transposase; Validated
Probab=97.27 E-value=0.00075 Score=69.25 Aligned_cols=101 Identities=21% Similarity=0.190 Sum_probs=55.3
Q ss_pred eEEEEEccCCChHHHHHHHHHcCcccccccceEEEEEeCCCCCHHHHHHHHHHHcCCCCCCCccHHHHHHHHHHHHhCCc
Q 047321 132 DVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSNTFEEISVAKAIIEGLGVSAFGLSEFESLMKQIQEYITGKK 211 (807)
Q Consensus 132 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~ 211 (807)
.-+.|+|++|+|||.||..+.+. .......++|+. ..+++..+..... ....+.... .+ .+.
T Consensus 107 ~nlll~Gp~GtGKTHLa~Aia~~--a~~~g~~v~f~~------~~~L~~~l~~a~~-----~~~~~~~l~----~l-~~~ 168 (269)
T PRK08181 107 ANLLLFGPPGGGKSHLAAAIGLA--LIENGWRVLFTR------TTDLVQKLQVARR-----ELQLESAIA----KL-DKF 168 (269)
T ss_pred ceEEEEecCCCcHHHHHHHHHHH--HHHcCCceeeee------HHHHHHHHHHHHh-----CCcHHHHHH----HH-hcC
Confidence 45899999999999999999873 222222344553 3444444433211 112222222 22 245
Q ss_pred eEEEEeCCCCCCccChH--HHHHhhcCCCCCcEEEEEcCCH
Q 047321 212 IFLVLDDVWDGDYKKWD--PFFSCLKNGHHESKILITTHDR 250 (807)
Q Consensus 212 ~LlVlDdv~~~~~~~~~--~l~~~l~~~~~gs~IliTTR~~ 250 (807)
-|||+||+.......|. .+...+.....+..+||||...
T Consensus 169 dLLIIDDlg~~~~~~~~~~~Lf~lin~R~~~~s~IiTSN~~ 209 (269)
T PRK08181 169 DLLILDDLAYVTKDQAETSVLFELISARYERRSILITANQP 209 (269)
T ss_pred CEEEEeccccccCCHHHHHHHHHHHHHHHhCCCEEEEcCCC
Confidence 69999999554333332 3555554322223488888653
No 294
>CHL00176 ftsH cell division protein; Validated
Probab=97.27 E-value=0.0046 Score=71.44 Aligned_cols=177 Identities=16% Similarity=0.093 Sum_probs=94.9
Q ss_pred CccccccchHHHHHHH---HhCCCCC---CCCCceEEEEEccCCChHHHHHHHHHcCcccccccceEEEEEeCCCCCHHH
Q 047321 104 GGVCGRVDEKNELLSK---LLCGSSE---QQKGLDVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSNTFEEIS 177 (807)
Q Consensus 104 ~~~vGR~~~~~~l~~~---L~~~~~~---~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~ 177 (807)
.+++|.++.++++.+. +..+..- +....+-+.++|++|+|||++|+.++... ... ++.++.. +
T Consensus 183 ~dv~G~~~~k~~l~eiv~~lk~~~~~~~~g~~~p~gVLL~GPpGTGKT~LAralA~e~--~~p-----~i~is~s----~ 251 (638)
T CHL00176 183 RDIAGIEEAKEEFEEVVSFLKKPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEA--EVP-----FFSISGS----E 251 (638)
T ss_pred HhccChHHHHHHHHHHHHHHhCHHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHh--CCC-----eeeccHH----H
Confidence 4578887666555444 3322110 01234568999999999999999998732 111 2322211 1
Q ss_pred HHHHHHHHcCCCCCCCccHHHHHHHHHHHHhCCceEEEEeCCCCC----------CccChHH-HHHhhc---C--CCCCc
Q 047321 178 VAKAIIEGLGVSAFGLSEFESLMKQIQEYITGKKIFLVLDDVWDG----------DYKKWDP-FFSCLK---N--GHHES 241 (807)
Q Consensus 178 ~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~----------~~~~~~~-l~~~l~---~--~~~gs 241 (807)
+. ....+ .....+...+.+...+.+.+|++||+..- ....++. +...+. . ...+.
T Consensus 252 f~----~~~~g-----~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~~dg~~~~~~V 322 (638)
T CHL00176 252 FV----EMFVG-----VGAARVRDLFKKAKENSPCIVFIDEIDAVGRQRGAGIGGGNDEREQTLNQLLTEMDGFKGNKGV 322 (638)
T ss_pred HH----HHhhh-----hhHHHHHHHHHHHhcCCCcEEEEecchhhhhcccCCCCCCcHHHHHHHHHHHhhhccccCCCCe
Confidence 11 00000 01122333344555678899999999431 0112222 222221 1 23455
Q ss_pred EEEEEcCCHHHHH-Hh-C---CCceEeCCCCChhhHHHHHHHHHhccCCccCccchHHHHHHHHHHcCC
Q 047321 242 KILITTHDRSVAL-QL-G---SIDIIPVKELGEGECWLLFKQIAFLRRSFEDCEKLEPIGRKIASKCKG 305 (807)
Q Consensus 242 ~IliTTR~~~v~~-~~-~---~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~~~~I~~~c~g 305 (807)
.||.||...+... .+ . -...+.++..+.++-.++++.++-.... ........+++.+.|
T Consensus 323 iVIaaTN~~~~LD~ALlRpGRFd~~I~v~lPd~~~R~~IL~~~l~~~~~-----~~d~~l~~lA~~t~G 386 (638)
T CHL00176 323 IVIAATNRVDILDAALLRPGRFDRQITVSLPDREGRLDILKVHARNKKL-----SPDVSLELIARRTPG 386 (638)
T ss_pred eEEEecCchHhhhhhhhccccCceEEEECCCCHHHHHHHHHHHHhhccc-----chhHHHHHHHhcCCC
Confidence 6777776644322 11 1 1357788888999999999887643111 112235678888887
No 295
>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.27 E-value=0.0032 Score=65.38 Aligned_cols=67 Identities=13% Similarity=0.062 Sum_probs=42.9
Q ss_pred HHHHHHHHHHhCCceEEEEeCCCCC-CccChHHHHHhhcCCCCCcEEEEEcCCHHHHHHhCCCceEeCC
Q 047321 198 SLMKQIQEYITGKKIFLVLDDVWDG-DYKKWDPFFSCLKNGHHESKILITTHDRSVALQLGSIDIIPVK 265 (807)
Q Consensus 198 ~~~~~l~~~l~~k~~LlVlDdv~~~-~~~~~~~l~~~l~~~~~gs~IliTTR~~~v~~~~~~~~~~~l~ 265 (807)
...-.+.+.+..++-++++|++... |...-..+...+.....+..||++|++.+.+..+.. +++.+.
T Consensus 160 ~qrl~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~~tiiivtH~~~~~~~~~d-~i~~l~ 227 (269)
T PRK14259 160 QQRLCIARTIAIEPEVILMDEPCSALDPISTLKIEETMHELKKNFTIVIVTHNMQQAVRVSD-MTAFFN 227 (269)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcC-EEEEEe
Confidence 3344466777788889999999664 444444455555543345679999999876655443 344443
No 296
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=97.26 E-value=0.0032 Score=64.43 Aligned_cols=61 Identities=15% Similarity=0.185 Sum_probs=41.4
Q ss_pred HHHHHHHHHHHhCCceEEEEeCCCCC-CccChHHHHHhhcCCCCCcEEEEEcCCHHHHHHhC
Q 047321 197 ESLMKQIQEYITGKKIFLVLDDVWDG-DYKKWDPFFSCLKNGHHESKILITTHDRSVALQLG 257 (807)
Q Consensus 197 ~~~~~~l~~~l~~k~~LlVlDdv~~~-~~~~~~~l~~~l~~~~~gs~IliTTR~~~v~~~~~ 257 (807)
+...-.+.+.+-.++-++++|++... |......+...+.....+..||+||++.+.+..+.
T Consensus 148 e~qrv~laral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~ 209 (242)
T TIGR03411 148 QKQWLEIGMLLMQDPKLLLLDEPVAGMTDEETEKTAELLKSLAGKHSVVVVEHDMEFVRSIA 209 (242)
T ss_pred HHHHHHHHHHHhcCCCEEEecCCccCCCHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhC
Confidence 33344567777788889999999765 55555556565554333567999999987765543
No 297
>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function. Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w
Probab=97.26 E-value=0.0029 Score=62.17 Aligned_cols=46 Identities=26% Similarity=0.314 Sum_probs=31.6
Q ss_pred CCceEEEEeCCCCC-CccChHHHHHhhcCCCCCcEEEEEcCCHHHHH
Q 047321 209 GKKIFLVLDDVWDG-DYKKWDPFFSCLKNGHHESKILITTHDRSVAL 254 (807)
Q Consensus 209 ~k~~LlVlDdv~~~-~~~~~~~l~~~l~~~~~gs~IliTTR~~~v~~ 254 (807)
..+-++++|++... +......+...+.....+..||++|++.+...
T Consensus 134 ~~~~illlDEP~~~LD~~~~~~l~~~l~~~~~~~tiIiitH~~~~~~ 180 (197)
T cd03278 134 RPSPFCVLDEVDAALDDANVERFARLLKEFSKETQFIVITHRKGTME 180 (197)
T ss_pred CCCCEEEEeCCcccCCHHHHHHHHHHHHHhccCCEEEEEECCHHHHh
Confidence 45579999999765 44444456565554444577999999988764
No 298
>PRK13409 putative ATPase RIL; Provisional
Probab=97.26 E-value=0.0021 Score=74.15 Aligned_cols=135 Identities=20% Similarity=0.170 Sum_probs=77.1
Q ss_pred CceEEEEEccCCChHHHHHHHHHcCcccc-c--ccce-EEEEEeC----CCCCHHHH-------------HHHHHHHcCC
Q 047321 130 GLDVISLVGLGGIGKTTLAQLAYNNDEVK-R--NFEK-VIWVCVS----NTFEEISV-------------AKAIIEGLGV 188 (807)
Q Consensus 130 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~-~--~f~~-~~wv~~~----~~~~~~~~-------------~~~i~~~l~~ 188 (807)
.-.+++|+|++|+|||||++.++...... + .++. +.++.-. ...++.+. ..++++.++.
T Consensus 364 ~Geiv~l~G~NGsGKSTLlk~L~Gl~~p~~G~I~~~~~i~y~~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~L~~l~l 443 (590)
T PRK13409 364 EGEVIGIVGPNGIGKTTFAKLLAGVLKPDEGEVDPELKISYKPQYIKPDYDGTVEDLLRSITDDLGSSYYKSEIIKPLQL 443 (590)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEEeeeEEEecccccCCCCCcHHHHHHHHhhhcChHHHHHHHHHHCCC
Confidence 44699999999999999999998642211 1 1111 1111100 11122211 2233444433
Q ss_pred CC------CCCccHHHHHHHHHHHHhCCceEEEEeCCCCC-CccChHHHHHhhcCC--CCCcEEEEEcCCHHHHHHhCCC
Q 047321 189 SA------FGLSEFESLMKQIQEYITGKKIFLVLDDVWDG-DYKKWDPFFSCLKNG--HHESKILITTHDRSVALQLGSI 259 (807)
Q Consensus 189 ~~------~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~-~~~~~~~l~~~l~~~--~~gs~IliTTR~~~v~~~~~~~ 259 (807)
.. ......+...-.+.+.+..++-+++||+..+. |...-..+...+... ..|..||++|++...+..+..
T Consensus 444 ~~~~~~~~~~LSGGe~QRvaiAraL~~~p~llLLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tviivsHD~~~~~~~aD- 522 (590)
T PRK13409 444 ERLLDKNVKDLSGGELQRVAIAACLSRDADLYLLDEPSAHLDVEQRLAVAKAIRRIAEEREATALVVDHDIYMIDYISD- 522 (590)
T ss_pred HHHHhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCC-
Confidence 21 11233344455577888889999999999765 444445555555543 236679999999887766543
Q ss_pred ceEeCC
Q 047321 260 DIIPVK 265 (807)
Q Consensus 260 ~~~~l~ 265 (807)
+++.+.
T Consensus 523 rvivl~ 528 (590)
T PRK13409 523 RLMVFE 528 (590)
T ss_pred EEEEEc
Confidence 344443
No 299
>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.25 E-value=0.0018 Score=67.79 Aligned_cols=58 Identities=14% Similarity=0.139 Sum_probs=41.1
Q ss_pred HHHHHHHHHHHhCCceEEEEeCCCCC-CccChHHHHHhhcCC--CCCcEEEEEcCCHHHHH
Q 047321 197 ESLMKQIQEYITGKKIFLVLDDVWDG-DYKKWDPFFSCLKNG--HHESKILITTHDRSVAL 254 (807)
Q Consensus 197 ~~~~~~l~~~l~~k~~LlVlDdv~~~-~~~~~~~l~~~l~~~--~~gs~IliTTR~~~v~~ 254 (807)
+...-.+.+.+..++-++++|+.... |......+...+... ..|..||++|++.+...
T Consensus 148 ~~qrv~laral~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~~~~ 208 (282)
T PRK13640 148 QKQRVAIAGILAVEPKIIILDESTSMLDPAGKEQILKLIRKLKKKNNLTVISITHDIDEAN 208 (282)
T ss_pred HHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHH
Confidence 33344567778889999999999765 555555566666543 23778999999987764
No 300
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=97.25 E-value=0.0032 Score=64.74 Aligned_cols=59 Identities=14% Similarity=0.195 Sum_probs=39.4
Q ss_pred HHHHHHHHHhCCceEEEEeCCCCC-CccChHHHHHhhcCC-CCCcEEEEEcCCHHHHHHhC
Q 047321 199 LMKQIQEYITGKKIFLVLDDVWDG-DYKKWDPFFSCLKNG-HHESKILITTHDRSVALQLG 257 (807)
Q Consensus 199 ~~~~l~~~l~~k~~LlVlDdv~~~-~~~~~~~l~~~l~~~-~~gs~IliTTR~~~v~~~~~ 257 (807)
..-.+.+.+..++-+++||++... |......+...+... ..|..||++|++......+.
T Consensus 151 qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~tH~~~~~~~~~ 211 (250)
T PRK11264 151 QRVAIARALAMRPEVILFDEPTSALDPELVGEVLNTIRQLAQEKRTMVIVTHEMSFARDVA 211 (250)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhc
Confidence 344467777788899999999665 444445555555432 23667999999987665433
No 301
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=97.25 E-value=0.0033 Score=64.28 Aligned_cols=59 Identities=17% Similarity=0.118 Sum_probs=40.8
Q ss_pred HHHHHHHHHhCCceEEEEeCCCCC-CccChHHHHHhhcCC-CCCcEEEEEcCCHHHHHHhC
Q 047321 199 LMKQIQEYITGKKIFLVLDDVWDG-DYKKWDPFFSCLKNG-HHESKILITTHDRSVALQLG 257 (807)
Q Consensus 199 ~~~~l~~~l~~k~~LlVlDdv~~~-~~~~~~~l~~~l~~~-~~gs~IliTTR~~~v~~~~~ 257 (807)
..-.+.+.+-.++-+++||++.+. |....+.+...+... ..|..||++|++......+.
T Consensus 148 qrv~laral~~~p~llilDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~~ 208 (242)
T PRK11124 148 QRVAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIRELAETGITQVIVTHEVEVARKTA 208 (242)
T ss_pred HHHHHHHHHhcCCCEEEEcCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhc
Confidence 344466777778889999999765 555566666666542 24677999999987765433
No 302
>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein. This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.
Probab=97.25 E-value=0.0031 Score=68.19 Aligned_cols=62 Identities=18% Similarity=0.158 Sum_probs=41.6
Q ss_pred HHHHHHHHHHHHhCCceEEEEeCCCCC-CccChHHHHHhhcCC--CCCcEEEEEcCCHHHHHHhC
Q 047321 196 FESLMKQIQEYITGKKIFLVLDDVWDG-DYKKWDPFFSCLKNG--HHESKILITTHDRSVALQLG 257 (807)
Q Consensus 196 ~~~~~~~l~~~l~~k~~LlVlDdv~~~-~~~~~~~l~~~l~~~--~~gs~IliTTR~~~v~~~~~ 257 (807)
.+...-.+.+.+..++-+++||++... |......+...+... ..|..||++|++.+.+..+.
T Consensus 135 GqkqRvalAraL~~~p~lllLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiiivtH~~~~~~~~~ 199 (354)
T TIGR02142 135 GEKQRVAIGRALLSSPRLLLMDEPLAALDDPRKYEILPYLERLHAEFGIPILYVSHSLQEVLRLA 199 (354)
T ss_pred HHHHHHHHHHHHHcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhC
Confidence 334445577778888999999999765 444444555555432 23667999999987765543
No 303
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=97.25 E-value=0.0015 Score=64.28 Aligned_cols=55 Identities=16% Similarity=0.185 Sum_probs=36.1
Q ss_pred HHHHHHHHHhCCceEEEEeCCCCC-CccChHHHHHhhcC-CCCCcEEEEEcCCHHHH
Q 047321 199 LMKQIQEYITGKKIFLVLDDVWDG-DYKKWDPFFSCLKN-GHHESKILITTHDRSVA 253 (807)
Q Consensus 199 ~~~~l~~~l~~k~~LlVlDdv~~~-~~~~~~~l~~~l~~-~~~gs~IliTTR~~~v~ 253 (807)
..-.+.+.+-.++-++++|++... |...-+.+...+.. ...|..||++|++....
T Consensus 130 ~rl~la~al~~~p~~lllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~i 186 (195)
T PRK13541 130 KIVAIARLIACQSDLWLLDEVETNLSKENRDLLNNLIVMKANSGGIVLLSSHLESSI 186 (195)
T ss_pred HHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCcccc
Confidence 344466777788899999999664 44444445555532 23466799999987543
No 304
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.
Probab=97.25 E-value=0.0038 Score=63.23 Aligned_cols=61 Identities=20% Similarity=0.168 Sum_probs=40.3
Q ss_pred HHHHHHHHHHHhCCceEEEEeCCCCC-CccChHHHHHhhcCCC--CCcEEEEEcCCHHHHHHhC
Q 047321 197 ESLMKQIQEYITGKKIFLVLDDVWDG-DYKKWDPFFSCLKNGH--HESKILITTHDRSVALQLG 257 (807)
Q Consensus 197 ~~~~~~l~~~l~~k~~LlVlDdv~~~-~~~~~~~l~~~l~~~~--~gs~IliTTR~~~v~~~~~ 257 (807)
+...-.+.+.+..++-+++||++... |......+...+.... .|..||++|++.+....+.
T Consensus 130 ~~qrv~laral~~~p~vllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~ 193 (230)
T TIGR02770 130 MLQRVMIALALLLEPPFLIADEPTTDLDVVNQARVLKLLRELRQLFGTGILLITHDLGVVARIA 193 (230)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhC
Confidence 33344567777778889999999765 4444445555555432 3667999999977655433
No 305
>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.24 E-value=0.00072 Score=70.59 Aligned_cols=61 Identities=20% Similarity=0.192 Sum_probs=41.5
Q ss_pred HHHHHHHHHHHHhCCceEEEEeCCCCC-CccChHHHHHhhcCC--CCCcEEEEEcCCHHHHHHh
Q 047321 196 FESLMKQIQEYITGKKIFLVLDDVWDG-DYKKWDPFFSCLKNG--HHESKILITTHDRSVALQL 256 (807)
Q Consensus 196 ~~~~~~~l~~~l~~k~~LlVlDdv~~~-~~~~~~~l~~~l~~~--~~gs~IliTTR~~~v~~~~ 256 (807)
.+...-.+.+.+..++-++++|++... |......+...+..- ..|..||++|++.+.....
T Consensus 141 Gq~qrl~laraL~~~p~llilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~~~~~~ 204 (277)
T PRK13652 141 GEKKRVAIAGVIAMEPQVLVLDEPTAGLDPQGVKELIDFLNDLPETYGMTVIFSTHQLDLVPEM 204 (277)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHh
Confidence 334445577788889999999999765 444455566665532 2367899999998765443
No 306
>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.24 E-value=0.0022 Score=65.00 Aligned_cols=61 Identities=16% Similarity=0.207 Sum_probs=47.0
Q ss_pred HHHHHHHHHHhCCceEEEEeCCCCC-CccChHHHHHhhcC--CCCCcEEEEEcCCHHHHHHhCC
Q 047321 198 SLMKQIQEYITGKKIFLVLDDVWDG-DYKKWDPFFSCLKN--GHHESKILITTHDRSVALQLGS 258 (807)
Q Consensus 198 ~~~~~l~~~l~~k~~LlVlDdv~~~-~~~~~~~l~~~l~~--~~~gs~IliTTR~~~v~~~~~~ 258 (807)
...-.|.+.|..++-+|..|++.+. |++.-..+...|.+ ...|-.|+++|+..+|...++.
T Consensus 147 KQRVaIARALa~~P~iLL~DEaTSALDP~TT~sIL~LL~~In~~lglTIvlITHEm~Vvk~ic~ 210 (339)
T COG1135 147 KQRVAIARALANNPKILLCDEATSALDPETTQSILELLKDINRELGLTIVLITHEMEVVKRICD 210 (339)
T ss_pred hhHHHHHHHHhcCCCEEEecCccccCChHHHHHHHHHHHHHHHHcCCEEEEEechHHHHHHHhh
Confidence 3345588999999999999999775 56666667777654 3578899999999998877654
No 307
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=97.24 E-value=0.0036 Score=63.27 Aligned_cols=66 Identities=15% Similarity=0.164 Sum_probs=43.2
Q ss_pred HHHHHHHHHHHhCCceEEEEeCCCCC-CccChHHHHHhhcCCCCCcEEEEEcCCHHHHHHhCCCceEeC
Q 047321 197 ESLMKQIQEYITGKKIFLVLDDVWDG-DYKKWDPFFSCLKNGHHESKILITTHDRSVALQLGSIDIIPV 264 (807)
Q Consensus 197 ~~~~~~l~~~l~~k~~LlVlDdv~~~-~~~~~~~l~~~l~~~~~gs~IliTTR~~~v~~~~~~~~~~~l 264 (807)
+...-.+.+.+-.++-++++|+.... |....+.+...+.....+..||++|++...... ..+++.+
T Consensus 155 ~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~--~d~i~~l 221 (226)
T cd03248 155 QKQRVAIARALIRNPQVLILDEATSALDAESEQQVQQALYDWPERRTVLVIAHRLSTVER--ADQILVL 221 (226)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEECCHHHHHh--CCEEEEe
Confidence 33344466777788999999999765 555555565655543334679999999877643 3445544
No 308
>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]
Probab=97.24 E-value=0.0018 Score=63.54 Aligned_cols=74 Identities=23% Similarity=0.296 Sum_probs=44.5
Q ss_pred HHHHHHHHcCCCCCC------CccHHHHHHHHHHHHhCCceEEEEeCCCCC-CccChHHHHHhhc---CCCCCcEEEEEc
Q 047321 178 VAKAIIEGLGVSAFG------LSEFESLMKQIQEYITGKKIFLVLDDVWDG-DYKKWDPFFSCLK---NGHHESKILITT 247 (807)
Q Consensus 178 ~~~~i~~~l~~~~~~------~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~-~~~~~~~l~~~l~---~~~~gs~IliTT 247 (807)
....+++.++..... ....++....+.+.+-.++-|||||+..+. |....+.+...+. ....+..+|+.|
T Consensus 151 ~a~~lle~~g~~~la~r~~~~LS~Ge~rrvLiaRALv~~P~LLiLDEP~~GLDl~~re~ll~~l~~~~~~~~~~~ll~Vt 230 (257)
T COG1119 151 AAQWLLELLGAKHLADRPFGSLSQGEQRRVLIARALVKDPELLILDEPAQGLDLIAREQLLNRLEELAASPGAPALLFVT 230 (257)
T ss_pred HHHHHHHHcchhhhccCchhhcCHhHHHHHHHHHHHhcCCCEEEecCccccCChHHHHHHHHHHHHHhcCCCCceEEEEE
Confidence 345566666654221 223344455578888999999999998664 4444445555554 333455677777
Q ss_pred CCHH
Q 047321 248 HDRS 251 (807)
Q Consensus 248 R~~~ 251 (807)
+..+
T Consensus 231 Hh~e 234 (257)
T COG1119 231 HHAE 234 (257)
T ss_pred cchh
Confidence 6543
No 309
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=97.24 E-value=0.003 Score=63.22 Aligned_cols=60 Identities=12% Similarity=0.171 Sum_probs=40.1
Q ss_pred HHHHHHHHHHHhCCceEEEEeCCCCC-CccChHHHHHhhcCC-CCCcEEEEEcCCHHHHHHh
Q 047321 197 ESLMKQIQEYITGKKIFLVLDDVWDG-DYKKWDPFFSCLKNG-HHESKILITTHDRSVALQL 256 (807)
Q Consensus 197 ~~~~~~l~~~l~~k~~LlVlDdv~~~-~~~~~~~l~~~l~~~-~~gs~IliTTR~~~v~~~~ 256 (807)
+...-.+.+.+..++-+++||++... |....+.+...+... ..|..||++|++......+
T Consensus 140 ~~qrv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tvi~~sh~~~~~~~~ 201 (213)
T cd03262 140 QQQRVAIARALAMNPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMVVVTHEMGFAREV 201 (213)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHh
Confidence 33344466777788889999999765 555555565655532 2466799999998765443
No 310
>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional
Probab=97.24 E-value=0.0014 Score=67.59 Aligned_cols=60 Identities=15% Similarity=0.236 Sum_probs=39.7
Q ss_pred HHHHHHHHHHh------CCceEEEEeCCCCC-CccChHHHHHhhcCC--CCCcEEEEEcCCHHHHHHhC
Q 047321 198 SLMKQIQEYIT------GKKIFLVLDDVWDG-DYKKWDPFFSCLKNG--HHESKILITTHDRSVALQLG 257 (807)
Q Consensus 198 ~~~~~l~~~l~------~k~~LlVlDdv~~~-~~~~~~~l~~~l~~~--~~gs~IliTTR~~~v~~~~~ 257 (807)
...-.+.+.+. .++-+++||++... |......+...+... ..|..||++|++........
T Consensus 140 ~qrv~la~al~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~ 208 (258)
T PRK13548 140 QQRVQLARVLAQLWEPDGPPRWLLLDEPTSALDLAHQHHVLRLARQLAHERGLAVIVVLHDLNLAARYA 208 (258)
T ss_pred HHHHHHHHHHhcccccCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhc
Confidence 33444666666 57899999999765 455555565655542 24667999999987665443
No 311
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=97.23 E-value=7.8e-06 Score=81.05 Aligned_cols=63 Identities=24% Similarity=0.299 Sum_probs=28.4
Q ss_pred CCCcccEEEEccCCCCCC-CcccccCCCCccEEeeccCcccccccccccccCCCCCCCCeeeeccCC
Q 047321 705 IMPRLSSLQIMNCRKLKA-LPDYLLQTIALQKLSIYSCDLLEELPILEDRRTTDIPRLSSLAIWYCP 770 (807)
Q Consensus 705 ~l~~L~~L~l~~c~~L~~-lp~~l~~l~~L~~L~l~~c~~l~~lP~~~~~~~~~l~~L~~L~i~~c~ 770 (807)
..|+|..|++++|-.++. +...+-.++.|++|.++.|..+ +| -.--.+...|+|.+|++-+|-
T Consensus 311 rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY~i--~p-~~~~~l~s~psl~yLdv~g~v 374 (419)
T KOG2120|consen 311 RCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCYDI--IP-ETLLELNSKPSLVYLDVFGCV 374 (419)
T ss_pred hCCceeeeccccccccCchHHHHHHhcchheeeehhhhcCC--Ch-HHeeeeccCcceEEEEecccc
Confidence 355555666655544432 1112334555556666555432 11 000123344555555555543
No 312
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.23 E-value=0.0029 Score=64.24 Aligned_cols=60 Identities=22% Similarity=0.222 Sum_probs=41.2
Q ss_pred HHHHHHHHHHHhCCceEEEEeCCCCC-CccChHHHHHhhcCCC--CCcEEEEEcCCHHHHHHh
Q 047321 197 ESLMKQIQEYITGKKIFLVLDDVWDG-DYKKWDPFFSCLKNGH--HESKILITTHDRSVALQL 256 (807)
Q Consensus 197 ~~~~~~l~~~l~~k~~LlVlDdv~~~-~~~~~~~l~~~l~~~~--~gs~IliTTR~~~v~~~~ 256 (807)
+...-.+.+.+..++-+++||++... |......+...+.... .|..||++|++.......
T Consensus 135 ~~qrl~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sh~~~~~~~~ 197 (232)
T cd03300 135 QQQRVAIARALVNEPKVLLLDEPLGALDLKLRKDMQLELKRLQKELGITFVFVTHDQEEALTM 197 (232)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHh
Confidence 33344567778888999999999665 5555555666665432 367899999998765443
No 313
>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.23 E-value=0.0032 Score=65.01 Aligned_cols=60 Identities=17% Similarity=0.132 Sum_probs=40.9
Q ss_pred HHHHHHHHHHhCCceEEEEeCCCCC-CccChHHHHHhhcCCCCCcEEEEEcCCHHHHHHhC
Q 047321 198 SLMKQIQEYITGKKIFLVLDDVWDG-DYKKWDPFFSCLKNGHHESKILITTHDRSVALQLG 257 (807)
Q Consensus 198 ~~~~~l~~~l~~k~~LlVlDdv~~~-~~~~~~~l~~~l~~~~~gs~IliTTR~~~v~~~~~ 257 (807)
...-.+.+.+-.++-+++||++... |......+...+.....|..||++|++...+..+.
T Consensus 160 ~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~tiiivsH~~~~~~~~~ 220 (258)
T PRK14268 160 QQRLCIARTLAVKPKIILFDEPTSALDPISTARIEDLIMNLKKDYTIVIVTHNMQQAARIS 220 (258)
T ss_pred HHHHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHhhCCEEEEEECCHHHHHHhC
Confidence 3344566777788899999999664 55555556565554334678999999987665443
No 314
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=97.23 E-value=0.0026 Score=64.39 Aligned_cols=60 Identities=17% Similarity=0.132 Sum_probs=39.9
Q ss_pred HHHHHHHHHHhCCceEEEEeCCCCC-CccChHHHHHhhcCCCCCcEEEEEcCCHHHHHHhC
Q 047321 198 SLMKQIQEYITGKKIFLVLDDVWDG-DYKKWDPFFSCLKNGHHESKILITTHDRSVALQLG 257 (807)
Q Consensus 198 ~~~~~l~~~l~~k~~LlVlDdv~~~-~~~~~~~l~~~l~~~~~gs~IliTTR~~~v~~~~~ 257 (807)
...-.+.+.+..++-++++|++... |......+...+........||++|++.+.+....
T Consensus 147 ~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~ 207 (227)
T cd03260 147 QQRLCLARALANEPEVLLLDEPTSALDPISTAKIEELIAELKKEYTIVIVTHNMQQAARVA 207 (227)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhhCcEEEEEeccHHHHHHhC
Confidence 3344566777788899999999765 44445556666554322267999999987655433
No 315
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=97.23 E-value=0.00037 Score=76.97 Aligned_cols=189 Identities=17% Similarity=0.166 Sum_probs=115.7
Q ss_pred CccccccchHHHHHHHHhCCCCCCCCCceEEEEEccCCChHHHHHHHHHcCcccccccceEEEEEeCCCCCHHHHHHHHH
Q 047321 104 GGVCGRVDEKNELLSKLLCGSSEQQKGLDVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSNTFEEISVAKAII 183 (807)
Q Consensus 104 ~~~vGR~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 183 (807)
+++||-+.-...|...+.... -..-....|+-|+||||+|+.++....... | .....+..-...+.|.
T Consensus 16 ~evvGQe~v~~~L~nal~~~r-----i~hAYlfsG~RGvGKTt~Ari~AkalNC~~------~-~~~ePC~~C~~Ck~I~ 83 (515)
T COG2812 16 DDVVGQEHVVKTLSNALENGR-----IAHAYLFSGPRGVGKTTIARILAKALNCEN------G-PTAEPCGKCISCKEIN 83 (515)
T ss_pred HHhcccHHHHHHHHHHHHhCc-----chhhhhhcCCCCcCchhHHHHHHHHhcCCC------C-CCCCcchhhhhhHhhh
Confidence 457999999999999987533 456678899999999999999875211110 0 0111111112222332
Q ss_pred HH--------cCCCCCCCccHHHHHHHHHHH-HhCCceEEEEeCCCCCCccChHHHHHhhcCCCCCcEEEEEcCCH-HHH
Q 047321 184 EG--------LGVSAFGLSEFESLMKQIQEY-ITGKKIFLVLDDVWDGDYKKWDPFFSCLKNGHHESKILITTHDR-SVA 253 (807)
Q Consensus 184 ~~--------l~~~~~~~~~~~~~~~~l~~~-l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~IliTTR~~-~v~ 253 (807)
.. -..+..+.++.+++.+.+.-. .+++.-+.|+|+|.......|..++..+-.-......|..|.+. .+.
T Consensus 84 ~g~~~DviEiDaASn~gVddiR~i~e~v~y~P~~~ryKVyiIDEvHMLS~~afNALLKTLEEPP~hV~FIlATTe~~Kip 163 (515)
T COG2812 84 EGSLIDVIEIDAASNTGVDDIREIIEKVNYAPSEGRYKVYIIDEVHMLSKQAFNALLKTLEEPPSHVKFILATTEPQKIP 163 (515)
T ss_pred cCCcccchhhhhhhccChHHHHHHHHHhccCCccccceEEEEecHHhhhHHHHHHHhcccccCccCeEEEEecCCcCcCc
Confidence 22 111112222322222222211 14566699999998777788888888887766666666655553 332
Q ss_pred -HHhCCCceEeCCCCChhhHHHHHHHHHhccCCccCccchHHHHHHHHHHcCCCHH
Q 047321 254 -LQLGSIDIIPVKELGEGECWLLFKQIAFLRRSFEDCEKLEPIGRKIASKCKGLPL 308 (807)
Q Consensus 254 -~~~~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~~~~I~~~c~glPL 308 (807)
..+.-.+.|.++.++.++-...+...+-..+-. ...+....|++..+|..-
T Consensus 164 ~TIlSRcq~f~fkri~~~~I~~~L~~i~~~E~I~----~e~~aL~~ia~~a~Gs~R 215 (515)
T COG2812 164 NTILSRCQRFDFKRLDLEEIAKHLAAILDKEGIN----IEEDALSLIARAAEGSLR 215 (515)
T ss_pred hhhhhccccccccCCCHHHHHHHHHHHHHhcCCc----cCHHHHHHHHHHcCCChh
Confidence 233446789999999999999888877544432 224556778888888654
No 316
>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT. This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.
Probab=97.23 E-value=0.0027 Score=68.55 Aligned_cols=63 Identities=24% Similarity=0.136 Sum_probs=43.1
Q ss_pred HHHHHHHHHHHHhCCceEEEEeCCCCC-CccChHHHHHhhcCC--C-CCcEEEEEcCCHHHHHHhCC
Q 047321 196 FESLMKQIQEYITGKKIFLVLDDVWDG-DYKKWDPFFSCLKNG--H-HESKILITTHDRSVALQLGS 258 (807)
Q Consensus 196 ~~~~~~~l~~~l~~k~~LlVlDdv~~~-~~~~~~~l~~~l~~~--~-~gs~IliTTR~~~v~~~~~~ 258 (807)
.+...-.+.+.+..++-+++||+.... |......+...+... . .|..||++|++.+.+..+..
T Consensus 141 Gq~QRvaLARAL~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~~g~til~vTHd~~ea~~l~d 207 (362)
T TIGR03258 141 GMQQRIAIARAIAIEPDVLLLDEPLSALDANIRANMREEIAALHEELPELTILCVTHDQDDALTLAD 207 (362)
T ss_pred HHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhCCCCEEEEEeCCHHHHHHhCC
Confidence 344445578888899999999998665 444455555555432 2 26789999999887665543
No 317
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=97.23 E-value=0.0035 Score=67.56 Aligned_cols=58 Identities=12% Similarity=0.190 Sum_probs=38.5
Q ss_pred HHHHHHHHhCCceEEEEeCCCCC-CccChHHHHHhhcC-CCCCcEEEEEcCCHHHHHHhC
Q 047321 200 MKQIQEYITGKKIFLVLDDVWDG-DYKKWDPFFSCLKN-GHHESKILITTHDRSVALQLG 257 (807)
Q Consensus 200 ~~~l~~~l~~k~~LlVlDdv~~~-~~~~~~~l~~~l~~-~~~gs~IliTTR~~~v~~~~~ 257 (807)
.-.+.+.+=|.++|+|||+.... |.+--..+...+.. ...|..+|++|+.+.+...++
T Consensus 480 RIaLARAlYG~P~lvVLDEPNsNLD~~GE~AL~~Ai~~~k~rG~~vvviaHRPs~L~~~D 539 (580)
T COG4618 480 RIALARALYGDPFLVVLDEPNSNLDSEGEAALAAAILAAKARGGTVVVIAHRPSALASVD 539 (580)
T ss_pred HHHHHHHHcCCCcEEEecCCCCCcchhHHHHHHHHHHHHHHcCCEEEEEecCHHHHhhcc
Confidence 33477888899999999998554 22222225555443 356777888888887766543
No 318
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=97.23 E-value=0.0012 Score=67.38 Aligned_cols=57 Identities=19% Similarity=0.254 Sum_probs=36.7
Q ss_pred HHHHHHHHhCCceEEEEeCCCCC-CccChHHHHHhhcCC-CCCcEEEEEcCCHHHHHHh
Q 047321 200 MKQIQEYITGKKIFLVLDDVWDG-DYKKWDPFFSCLKNG-HHESKILITTHDRSVALQL 256 (807)
Q Consensus 200 ~~~l~~~l~~k~~LlVlDdv~~~-~~~~~~~l~~~l~~~-~~gs~IliTTR~~~v~~~~ 256 (807)
.-.+.+.+..++-++++|++... |......+...+... ..|..||++|++.+....+
T Consensus 145 rv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~sH~~~~~~~~ 203 (241)
T PRK10895 145 RVEIARALAANPKFILLDEPFAGVDPISVIDIKRIIEHLRDSGLGVLITDHNVRETLAV 203 (241)
T ss_pred HHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEEcCHHHHHHh
Confidence 34466777788899999999664 434444444444322 2466799999998654443
No 319
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=97.23 E-value=0.0021 Score=66.85 Aligned_cols=57 Identities=12% Similarity=0.172 Sum_probs=38.9
Q ss_pred HHHHHHHHhCCceEEEEeCCCCC-CccChHHHHHhhcCC--CCCcEEEEEcCCHHHHHHh
Q 047321 200 MKQIQEYITGKKIFLVLDDVWDG-DYKKWDPFFSCLKNG--HHESKILITTHDRSVALQL 256 (807)
Q Consensus 200 ~~~l~~~l~~k~~LlVlDdv~~~-~~~~~~~l~~~l~~~--~~gs~IliTTR~~~v~~~~ 256 (807)
.-.+.+.+-.++-+++||++... |......+...+... ..|..||++|++......+
T Consensus 151 rv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~~~~~~ 210 (269)
T PRK11831 151 RAALARAIALEPDLIMFDEPFVGQDPITMGVLVKLISELNSALGVTCVVVSHDVPEVLSI 210 (269)
T ss_pred HHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHh
Confidence 34466777788899999999665 444455555555543 2367899999997665544
No 320
>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed
Probab=97.22 E-value=0.0008 Score=72.93 Aligned_cols=63 Identities=24% Similarity=0.260 Sum_probs=43.4
Q ss_pred HHHHHHHHHHHHhCCceEEEEeCCCCC-CccChHHHHHhhcCC--CCCcEEEEEcCCHHHHHHhCC
Q 047321 196 FESLMKQIQEYITGKKIFLVLDDVWDG-DYKKWDPFFSCLKNG--HHESKILITTHDRSVALQLGS 258 (807)
Q Consensus 196 ~~~~~~~l~~~l~~k~~LlVlDdv~~~-~~~~~~~l~~~l~~~--~~gs~IliTTR~~~v~~~~~~ 258 (807)
.+...-.+.+.+-.++-+++||+.... |....+.+...+... ..|..||++|++...+..+..
T Consensus 148 Gq~QRVaLARaL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tiI~vTHd~~ea~~laD 213 (375)
T PRK09452 148 GQQQRVAIARAVVNKPKVLLLDESLSALDYKLRKQMQNELKALQRKLGITFVFVTHDQEEALTMSD 213 (375)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCC
Confidence 344455577888888999999999665 444455566665542 237789999999887665543
No 321
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=97.22 E-value=0.00081 Score=77.39 Aligned_cols=124 Identities=18% Similarity=0.281 Sum_probs=76.0
Q ss_pred CccccccchHHHHHHHHhCCCCC---CCCCceEEEEEccCCChHHHHHHHHHcCcccccccceEEEEEeCCCCCHHHHHH
Q 047321 104 GGVCGRVDEKNELLSKLLCGSSE---QQKGLDVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSNTFEEISVAK 180 (807)
Q Consensus 104 ~~~vGR~~~~~~l~~~L~~~~~~---~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~ 180 (807)
..++|-++.+..+.+.+.....+ .+....+..++||.|+|||.||+.++.. .-+.=+..+-++.|....-.
T Consensus 491 ~rViGQd~AV~avs~aIrraRaGL~dp~rPigsFlF~GPTGVGKTELAkaLA~~--Lfg~e~aliR~DMSEy~EkH---- 564 (786)
T COG0542 491 KRVIGQDEAVEAVSDAIRRARAGLGDPNRPIGSFLFLGPTGVGKTELAKALAEA--LFGDEQALIRIDMSEYMEKH---- 564 (786)
T ss_pred cceeChHHHHHHHHHHHHHHhcCCCCCCCCceEEEeeCCCcccHHHHHHHHHHH--hcCCCccceeechHHHHHHH----
Confidence 46899999999998887543321 2445678888999999999999988751 11000223333333222111
Q ss_pred HHHHHcCCC--CCCCccHHHHHHHHHHHHhCCce-EEEEeCCCCCCccChHHHHHhhcCC
Q 047321 181 AIIEGLGVS--AFGLSEFESLMKQIQEYITGKKI-FLVLDDVWDGDYKKWDPFFSCLKNG 237 (807)
Q Consensus 181 ~i~~~l~~~--~~~~~~~~~~~~~l~~~l~~k~~-LlVlDdv~~~~~~~~~~l~~~l~~~ 237 (807)
.+-+-+|.+ ..+-.+.. .+-+..+.++| +|.||++...+++..+.+...|.++
T Consensus 565 sVSrLIGaPPGYVGyeeGG----~LTEaVRr~PySViLlDEIEKAHpdV~nilLQVlDdG 620 (786)
T COG0542 565 SVSRLIGAPPGYVGYEEGG----QLTEAVRRKPYSVILLDEIEKAHPDVFNLLLQVLDDG 620 (786)
T ss_pred HHHHHhCCCCCCceecccc----chhHhhhcCCCeEEEechhhhcCHHHHHHHHHHhcCC
Confidence 122223322 12222222 34455667878 8889999777888888888888776
No 322
>PF10443 RNA12: RNA12 protein; InterPro: IPR018850 Mitochondrial escape protein 2 (also known as RNA12) plays a role in maintaining the mitochondrial genome and in controlling mtDNA escape [, ]. It is also involved in the regulation of mtDNA nucleotide structure and number []. Additionally, this protein have a dispensable role in the early maturation of pre-rRNA [].
Probab=97.22 E-value=0.018 Score=61.68 Aligned_cols=211 Identities=15% Similarity=0.156 Sum_probs=124.7
Q ss_pred ccchHHHHHHHHhCCCCCCCCCceEEEEEccCCChHHHHH-HHHHcCcccccccceEEEEEeCCC---CCHHHHHHHHHH
Q 047321 109 RVDEKNELLSKLLCGSSEQQKGLDVISLVGLGGIGKTTLA-QLAYNNDEVKRNFEKVIWVCVSNT---FEEISVAKAIIE 184 (807)
Q Consensus 109 R~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa-~~v~~~~~~~~~f~~~~wv~~~~~---~~~~~~~~~i~~ 184 (807)
|.+..++|..||... .-.+|+|.||-|+||+.|+ .++..+.+. ++.+++.+- .+...+...++.
T Consensus 1 R~e~~~~L~~wL~e~------~~TFIvV~GPrGSGK~elV~d~~L~~r~~------vL~IDC~~i~~ar~D~~~I~~lA~ 68 (431)
T PF10443_consen 1 RKEAIEQLKSWLNEN------PNTFIVVQGPRGSGKRELVMDHVLKDRKN------VLVIDCDQIVKARGDAAFIKNLAS 68 (431)
T ss_pred CchHHHHHHHHHhcC------CCeEEEEECCCCCCccHHHHHHHHhCCCC------EEEEEChHhhhccChHHHHHHHHH
Confidence 677889999999843 4579999999999999999 777764322 444444322 122333333333
Q ss_pred HcCC-----------------------CCCCC-ccHHHHHHH--------HHH-------------------HHh---CC
Q 047321 185 GLGV-----------------------SAFGL-SEFESLMKQ--------IQE-------------------YIT---GK 210 (807)
Q Consensus 185 ~l~~-----------------------~~~~~-~~~~~~~~~--------l~~-------------------~l~---~k 210 (807)
++|. ...+. .+.+..... |++ ++. .+
T Consensus 69 qvGY~PvFsw~nSiss~IDLa~qGltGqKaGfSes~e~Ql~~IL~~t~~ALr~ial~~~~~~~~~~~l~e~~yl~~hPe~ 148 (431)
T PF10443_consen 69 QVGYFPVFSWMNSISSFIDLAVQGLTGQKAGFSESLETQLKKILQTTATALRDIALSNRKKDDKDANLKEEDYLEAHPER 148 (431)
T ss_pred hcCCCcchHHHHHHHHHHHHHHhhccccccCCCCChHHHHHHHHHHHHHHHHHHHHHhhhccccccccCchhhhhhCCcc
Confidence 3322 22221 122221111 111 111 13
Q ss_pred ceEEEEeCCCCCC---ccChHHHHHh---hcCCCCCcEEEEEcCCHHHHHHh----C--CCceEeCCCCChhhHHHHHHH
Q 047321 211 KIFLVLDDVWDGD---YKKWDPFFSC---LKNGHHESKILITTHDRSVALQL----G--SIDIIPVKELGEGECWLLFKQ 278 (807)
Q Consensus 211 ~~LlVlDdv~~~~---~~~~~~l~~~---l~~~~~gs~IliTTR~~~v~~~~----~--~~~~~~l~~L~~~~~~~Lf~~ 278 (807)
+-++|+|+.-... .-.|+.+..- +- ..+-.+||++|-+......+ . ..+.+.|...+++.|..+...
T Consensus 149 ~PVVVIdnF~~k~~~~~~iy~~laeWAa~Lv-~~nIAHVIFlT~dv~~~k~LskaLPn~vf~tI~L~Das~~~Ak~yV~~ 227 (431)
T PF10443_consen 149 RPVVVIDNFLHKAEENDFIYDKLAEWAASLV-QNNIAHVIFLTDDVSYSKPLSKALPNRVFKTISLSDASPESAKQYVLS 227 (431)
T ss_pred CCEEEEcchhccCcccchHHHHHHHHHHHHH-hcCccEEEEECCCCchhhhHHHhCCCCceeEEeecCCCHHHHHHHHHH
Confidence 6799999984421 1122222211 11 13445789988886555433 2 245788999999999999998
Q ss_pred HHhccCCc------------cC----ccchHHHHHHHHHHcCCCHHHHHHHHHHhhcCCCHH-HHHHHHhc
Q 047321 279 IAFLRRSF------------ED----CEKLEPIGRKIASKCKGLPLAAKVIGNLLRSKNTAK-EWHIILDS 332 (807)
Q Consensus 279 ~a~~~~~~------------~~----~~~~~~~~~~I~~~c~glPLai~~~~~~l~~~~~~~-~w~~~~~~ 332 (807)
+.-..... .. .....+-....++.+||=-.-+..+++.++...+++ .-..+.++
T Consensus 228 ~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eld~~i~~LGGRltDLe~lvrRiksGe~p~~Av~~iI~q 298 (431)
T PF10443_consen 228 QLDEDTEDSSDSKESNEQNKNDKSAENEKDLAELDECIEPLGGRLTDLEFLVRRIKSGESPEEAVEEIISQ 298 (431)
T ss_pred HhcccccccccccccccccccccccccccchHHHHHHHHHcCCcHHHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 87443110 00 013445567788999999999999999999887643 44444443
No 323
>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=97.22 E-value=0.0047 Score=64.08 Aligned_cols=57 Identities=16% Similarity=0.248 Sum_probs=39.7
Q ss_pred HHHHHHHHHhCCceEEEEeCCCCC-CccChHHHHHhhcCCCCCcEEEEEcCCHHHHHH
Q 047321 199 LMKQIQEYITGKKIFLVLDDVWDG-DYKKWDPFFSCLKNGHHESKILITTHDRSVALQ 255 (807)
Q Consensus 199 ~~~~l~~~l~~k~~LlVlDdv~~~-~~~~~~~l~~~l~~~~~gs~IliTTR~~~v~~~ 255 (807)
..-.+.+.+-.++-++++|++... |......+...+.....++.||++|++.+....
T Consensus 145 qrl~LaRall~~p~illlDEpts~LD~~~~~~l~~~l~~~~~~~tii~isH~~~~i~~ 202 (275)
T cd03289 145 QLMCLARSVLSKAKILLLDEPSAHLDPITYQVIRKTLKQAFADCTVILSEHRIEAMLE 202 (275)
T ss_pred HHHHHHHHHhcCCCEEEEECccccCCHHHHHHHHHHHHHhcCCCEEEEEECCHHHHHh
Confidence 344466777788899999999765 444555566666544457789999998776543
No 324
>PRK06921 hypothetical protein; Provisional
Probab=97.22 E-value=0.0019 Score=66.58 Aligned_cols=100 Identities=23% Similarity=0.343 Sum_probs=55.7
Q ss_pred CceEEEEEccCCChHHHHHHHHHcCcccccc-cceEEEEEeCCCCCHHHHHHHHHHHcCCCCCCCccHHHHHHHHHHHHh
Q 047321 130 GLDVISLVGLGGIGKTTLAQLAYNNDEVKRN-FEKVIWVCVSNTFEEISVAKAIIEGLGVSAFGLSEFESLMKQIQEYIT 208 (807)
Q Consensus 130 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~-f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 208 (807)
....+.++|..|+|||+||..+++. +... -..++|+.. .+++..+...+ +.....+. .+
T Consensus 116 ~~~~l~l~G~~G~GKThLa~aia~~--l~~~~g~~v~y~~~------~~l~~~l~~~~----------~~~~~~~~-~~- 175 (266)
T PRK06921 116 RKNSIALLGQPGSGKTHLLTAAANE--LMRKKGVPVLYFPF------VEGFGDLKDDF----------DLLEAKLN-RM- 175 (266)
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHH--HhhhcCceEEEEEH------HHHHHHHHHHH----------HHHHHHHH-Hh-
Confidence 3567899999999999999999984 3322 234566653 22233322211 11111222 22
Q ss_pred CCceEEEEeCCCC-----CCccChHH--HHHhhcCC-CCCcEEEEEcCC
Q 047321 209 GKKIFLVLDDVWD-----GDYKKWDP--FFSCLKNG-HHESKILITTHD 249 (807)
Q Consensus 209 ~k~~LlVlDdv~~-----~~~~~~~~--l~~~l~~~-~~gs~IliTTR~ 249 (807)
.+--|||+||+.. +....|.. +...+... ..+..+||||..
T Consensus 176 ~~~dlLiIDDl~~~~~g~e~~t~~~~~~lf~iin~R~~~~k~tIitsn~ 224 (266)
T PRK06921 176 KKVEVLFIDDLFKPVNGKPRATEWQIEQMYSVLNYRYLNHKPILISSEL 224 (266)
T ss_pred cCCCEEEEeccccccCCCccCCHHHHHHHHHHHHHHHHCCCCEEEECCC
Confidence 3467999999932 22334543 55444432 234457888764
No 325
>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional
Probab=97.22 E-value=0.0035 Score=64.70 Aligned_cols=60 Identities=12% Similarity=0.149 Sum_probs=41.7
Q ss_pred HHHHHHHHHHhCCceEEEEeCCCCC-CccChHHHHHhhcCC-CCCcEEEEEcCCHHHHHHhC
Q 047321 198 SLMKQIQEYITGKKIFLVLDDVWDG-DYKKWDPFFSCLKNG-HHESKILITTHDRSVALQLG 257 (807)
Q Consensus 198 ~~~~~l~~~l~~k~~LlVlDdv~~~-~~~~~~~l~~~l~~~-~~gs~IliTTR~~~v~~~~~ 257 (807)
...-.+.+.+-.++-+++||++... |......+...+... ..|..||++|++......+.
T Consensus 158 ~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsH~~~~~~~~~ 219 (257)
T PRK10619 158 QQRVSIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVS 219 (257)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhc
Confidence 3444567777888889999999765 555555566655433 24778999999988766543
No 326
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=97.22 E-value=0.0025 Score=65.28 Aligned_cols=58 Identities=16% Similarity=0.166 Sum_probs=39.2
Q ss_pred HHHHHHHHHhCCceEEEEeCCCCC-CccChHHHHHhhcCC--CCCcEEEEEcCCHHHHHHh
Q 047321 199 LMKQIQEYITGKKIFLVLDDVWDG-DYKKWDPFFSCLKNG--HHESKILITTHDRSVALQL 256 (807)
Q Consensus 199 ~~~~l~~~l~~k~~LlVlDdv~~~-~~~~~~~l~~~l~~~--~~gs~IliTTR~~~v~~~~ 256 (807)
..-.+.+.+-.++-+++||++... |......+...+... ..|..||++|++.+.+..+
T Consensus 152 qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~tH~~~~~~~~ 212 (243)
T TIGR02315 152 QRVAIARALAQQPDLILADEPIASLDPKTSKQVMDYLKRINKEDGITVIINLHQVDLAKKY 212 (243)
T ss_pred HHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHh
Confidence 344466777788889999999765 444445555555433 2366799999998776544
No 327
>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.22 E-value=0.0045 Score=63.64 Aligned_cols=58 Identities=14% Similarity=0.079 Sum_probs=39.8
Q ss_pred HHHHHHHHhCCceEEEEeCCCCC-CccChHHHHHhhcCCCCCcEEEEEcCCHHHHHHhC
Q 047321 200 MKQIQEYITGKKIFLVLDDVWDG-DYKKWDPFFSCLKNGHHESKILITTHDRSVALQLG 257 (807)
Q Consensus 200 ~~~l~~~l~~k~~LlVlDdv~~~-~~~~~~~l~~~l~~~~~gs~IliTTR~~~v~~~~~ 257 (807)
.-.+.+.+..++-+++||++... |......+...+.....|..||++|++......+.
T Consensus 155 rv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tilivsh~~~~~~~~~ 213 (251)
T PRK14249 155 RLCIARVLAIEPEVILMDEPCSALDPVSTMRIEELMQELKQNYTIAIVTHNMQQAARAS 213 (251)
T ss_pred HHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhC
Confidence 34466777788899999999664 44445555555544334678999999987765543
No 328
>PRK12377 putative replication protein; Provisional
Probab=97.21 E-value=0.00088 Score=67.83 Aligned_cols=101 Identities=21% Similarity=0.132 Sum_probs=56.7
Q ss_pred ceEEEEEccCCChHHHHHHHHHcCcccccccceEEEEEeCCCCCHHHHHHHHHHHcCCCCCCCccHHHHHHHHHHHHhCC
Q 047321 131 LDVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSNTFEEISVAKAIIEGLGVSAFGLSEFESLMKQIQEYITGK 210 (807)
Q Consensus 131 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k 210 (807)
...+.|+|+.|+|||+||..+++. .......++++++. +++..+-..... ...... +.+.+ .+
T Consensus 101 ~~~l~l~G~~GtGKThLa~AIa~~--l~~~g~~v~~i~~~------~l~~~l~~~~~~----~~~~~~----~l~~l-~~ 163 (248)
T PRK12377 101 CTNFVFSGKPGTGKNHLAAAIGNR--LLAKGRSVIVVTVP------DVMSRLHESYDN----GQSGEK----FLQEL-CK 163 (248)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH--HHHcCCCeEEEEHH------HHHHHHHHHHhc----cchHHH----HHHHh-cC
Confidence 467899999999999999999984 33333335565542 344444333211 111111 22222 46
Q ss_pred ceEEEEeCCCCCCccChHH--HHHhhcCC-CCCcEEEEEcC
Q 047321 211 KIFLVLDDVWDGDYKKWDP--FFSCLKNG-HHESKILITTH 248 (807)
Q Consensus 211 ~~LlVlDdv~~~~~~~~~~--l~~~l~~~-~~gs~IliTTR 248 (807)
.-|||+||+.......|.. +...+... .+.--+||||-
T Consensus 164 ~dLLiIDDlg~~~~s~~~~~~l~~ii~~R~~~~~ptiitSN 204 (248)
T PRK12377 164 VDLLVLDEIGIQRETKNEQVVLNQIIDRRTASMRSVGMLTN 204 (248)
T ss_pred CCEEEEcCCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEcC
Confidence 7799999995554445553 44444332 22223677764
No 329
>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.21 E-value=0.0041 Score=65.25 Aligned_cols=61 Identities=16% Similarity=0.099 Sum_probs=41.7
Q ss_pred HHHHHHHHHHHHhCCceEEEEeCCCCC-CccChHHHHHhhcCC-CCCcEEEEEcCCHHHHHHh
Q 047321 196 FESLMKQIQEYITGKKIFLVLDDVWDG-DYKKWDPFFSCLKNG-HHESKILITTHDRSVALQL 256 (807)
Q Consensus 196 ~~~~~~~l~~~l~~k~~LlVlDdv~~~-~~~~~~~l~~~l~~~-~~gs~IliTTR~~~v~~~~ 256 (807)
.+...-.+.+.+..++-+++||++... |......+...+... ..|..||++|++.+.+..+
T Consensus 148 GqkqrvaiA~aL~~~p~illLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~vtHd~~~~~~~ 210 (288)
T PRK13643 148 GQMRRVAIAGILAMEPEVLVLDEPTAGLDPKARIEMMQLFESIHQSGQTVVLVTHLMDDVADY 210 (288)
T ss_pred HHHHHHHHHHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHh
Confidence 334445577788888899999999765 444555555555432 2477899999998866543
No 330
>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional
Probab=97.21 E-value=0.0033 Score=65.02 Aligned_cols=61 Identities=16% Similarity=0.115 Sum_probs=40.9
Q ss_pred HHHHHHHHHHHhCCceEEEEeCCCCC-CccChHHHHHhhcCCCCCcEEEEEcCCHHHHHHhC
Q 047321 197 ESLMKQIQEYITGKKIFLVLDDVWDG-DYKKWDPFFSCLKNGHHESKILITTHDRSVALQLG 257 (807)
Q Consensus 197 ~~~~~~l~~~l~~k~~LlVlDdv~~~-~~~~~~~l~~~l~~~~~gs~IliTTR~~~v~~~~~ 257 (807)
+...-.+.+.+..++-++++|++... |....+.+...+.....+..||++|++......+.
T Consensus 161 q~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tiii~sH~~~~~~~~~ 222 (260)
T PRK10744 161 QQQRLCIARGIAIRPEVLLLDEPCSALDPISTGRIEELITELKQDYTVVIVTHNMQQAARCS 222 (260)
T ss_pred HHHHHHHHHHHHCCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhC
Confidence 33344567777788899999999764 44444555555554334567999999987665433
No 331
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=97.20 E-value=0.0026 Score=62.56 Aligned_cols=22 Identities=23% Similarity=0.169 Sum_probs=20.3
Q ss_pred eEEEEEccCCChHHHHHHHHHc
Q 047321 132 DVISLVGLGGIGKTTLAQLAYN 153 (807)
Q Consensus 132 ~vi~I~G~gGiGKTtLa~~v~~ 153 (807)
++++|+|++|.|||||++.+..
T Consensus 26 ~~~~ltGpNg~GKSTllr~i~~ 47 (199)
T cd03283 26 NGILITGSNMSGKSTFLRTIGV 47 (199)
T ss_pred cEEEEECCCCCChHHHHHHHHH
Confidence 7999999999999999998864
No 332
>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein. This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.
Probab=97.20 E-value=0.00066 Score=73.11 Aligned_cols=129 Identities=17% Similarity=0.184 Sum_probs=74.6
Q ss_pred CceEEEEEccCCChHHHHHHHHHcCcccc-c--ccc------------eEEEEEeCC----CCCH---------------
Q 047321 130 GLDVISLVGLGGIGKTTLAQLAYNNDEVK-R--NFE------------KVIWVCVSN----TFEE--------------- 175 (807)
Q Consensus 130 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~-~--~f~------------~~~wv~~~~----~~~~--------------- 175 (807)
.-.+++|+|++|+|||||.+.++.-.... + .|+ .+.++.-.. ..++
T Consensus 29 ~Ge~~~l~GpsGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~~~~r~ig~v~Q~~~lfp~~tv~eNi~~~~~~~~~~~ 108 (353)
T TIGR03265 29 KGEFVCLLGPSGCGKTTLLRIIAGLERQTAGTIYQGGRDITRLPPQKRDYGIVFQSYALFPNLTVADNIAYGLKNRGMGR 108 (353)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCCEEEEeCCcccCCCCcHHHHHHHHHHhcCCCH
Confidence 34699999999999999999997532211 0 011 111111000 0011
Q ss_pred ---HHHHHHHHHHcCCCC------CCCccHHHHHHHHHHHHhCCceEEEEeCCCCC-CccChHHHHHhhcCC--CCCcEE
Q 047321 176 ---ISVAKAIIEGLGVSA------FGLSEFESLMKQIQEYITGKKIFLVLDDVWDG-DYKKWDPFFSCLKNG--HHESKI 243 (807)
Q Consensus 176 ---~~~~~~i~~~l~~~~------~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~-~~~~~~~l~~~l~~~--~~gs~I 243 (807)
.....++++.++... ......+...-.+.+.+..++-+++||+.... |......+...+... ..|..|
T Consensus 109 ~~~~~~~~~~l~~l~L~~~~~~~~~~LSgGq~QRvaLARaL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~~~tv 188 (353)
T TIGR03265 109 AEVAERVAELLDLVGLPGSERKYPGQLSGGQQQRVALARALATSPGLLLLDEPLSALDARVREHLRTEIRQLQRRLGVTT 188 (353)
T ss_pred HHHHHHHHHHHHHcCCCchhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEE
Confidence 122344455554432 11233444455678888889999999998664 444444555555432 236789
Q ss_pred EEEcCCHHHHHHhCC
Q 047321 244 LITTHDRSVALQLGS 258 (807)
Q Consensus 244 liTTR~~~v~~~~~~ 258 (807)
|++|++...+..+..
T Consensus 189 i~vTHd~~ea~~l~d 203 (353)
T TIGR03265 189 IMVTHDQEEALSMAD 203 (353)
T ss_pred EEEcCCHHHHHHhCC
Confidence 999999887765543
No 333
>PRK10865 protein disaggregation chaperone; Provisional
Probab=97.20 E-value=0.0034 Score=75.62 Aligned_cols=124 Identities=16% Similarity=0.253 Sum_probs=69.1
Q ss_pred CccccccchHHHHHHHHhCCCC---CCCCCceEEEEEccCCChHHHHHHHHHcCcccccccceEEEEEeCCCCCHHHHHH
Q 047321 104 GGVCGRVDEKNELLSKLLCGSS---EQQKGLDVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSNTFEEISVAK 180 (807)
Q Consensus 104 ~~~vGR~~~~~~l~~~L~~~~~---~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~ 180 (807)
..++|.+..++.+...+..... ..+....++.++|+.|+|||++|+.+++. ....-...+.++++.... ..
T Consensus 568 ~~viGQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~Lf~Gp~G~GKT~lA~aLa~~--l~~~~~~~i~id~se~~~-~~--- 641 (857)
T PRK10865 568 HRVIGQNEAVEAVSNAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELCKALANF--MFDSDDAMVRIDMSEFME-KH--- 641 (857)
T ss_pred CeEeCCHHHHHHHHHHHHHHHhcccCCCCCCceEEEECCCCCCHHHHHHHHHHH--hhcCCCcEEEEEhHHhhh-hh---
Confidence 3588999998888888754211 00223357889999999999999999862 111112233444433211 11
Q ss_pred HHHHHcCCCC--CCCccHHHHHHHHHHHHhC-CceEEEEeCCCCCCccChHHHHHhhcCC
Q 047321 181 AIIEGLGVSA--FGLSEFESLMKQIQEYITG-KKIFLVLDDVWDGDYKKWDPFFSCLKNG 237 (807)
Q Consensus 181 ~i~~~l~~~~--~~~~~~~~~~~~l~~~l~~-k~~LlVlDdv~~~~~~~~~~l~~~l~~~ 237 (807)
.+.+-++... .+...... +.+.++. ..-+|+|||+...+...+..+...+..+
T Consensus 642 ~~~~LiG~~pgy~g~~~~g~----l~~~v~~~p~~vLllDEieka~~~v~~~Ll~ile~g 697 (857)
T PRK10865 642 SVSRLVGAPPGYVGYEEGGY----LTEAVRRRPYSVILLDEVEKAHPDVFNILLQVLDDG 697 (857)
T ss_pred hHHHHhCCCCcccccchhHH----HHHHHHhCCCCeEEEeehhhCCHHHHHHHHHHHhhC
Confidence 1111222211 11111112 2333333 3369999999766777777787777554
No 334
>PRK14246 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.20 E-value=0.0039 Score=64.31 Aligned_cols=59 Identities=15% Similarity=0.133 Sum_probs=41.6
Q ss_pred HHHHHHHHHhCCceEEEEeCCCCC-CccChHHHHHhhcCCCCCcEEEEEcCCHHHHHHhC
Q 047321 199 LMKQIQEYITGKKIFLVLDDVWDG-DYKKWDPFFSCLKNGHHESKILITTHDRSVALQLG 257 (807)
Q Consensus 199 ~~~~l~~~l~~k~~LlVlDdv~~~-~~~~~~~l~~~l~~~~~gs~IliTTR~~~v~~~~~ 257 (807)
..-.+.+.+-.++-++++|+.... |....+.+...+.....+..||++|++...+..+.
T Consensus 160 qrl~laral~~~P~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiilvsh~~~~~~~~~ 219 (257)
T PRK14246 160 QRLTIARALALKPKVLLMDEPTSMIDIVNSQAIEKLITELKNEIAIVIVSHNPQQVARVA 219 (257)
T ss_pred HHHHHHHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCcEEEEEECCHHHHHHhC
Confidence 344566777788899999999764 45555566666654444578999999988765543
No 335
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=97.19 E-value=0.00087 Score=80.34 Aligned_cols=125 Identities=20% Similarity=0.245 Sum_probs=70.2
Q ss_pred CccccccchHHHHHHHHhCCC---CCCCCCceEEEEEccCCChHHHHHHHHHcCcccccccceEEEEEeCCCCCHHHHHH
Q 047321 104 GGVCGRVDEKNELLSKLLCGS---SEQQKGLDVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSNTFEEISVAK 180 (807)
Q Consensus 104 ~~~vGR~~~~~~l~~~L~~~~---~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~ 180 (807)
..++|.++.++.+.+.+.... ...+....++.++|+.|+|||.+|+.++.. .-......+-++++...+..
T Consensus 566 ~~v~GQ~~Av~~v~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKT~lA~~La~~--l~~~~~~~~~~dmse~~~~~---- 639 (852)
T TIGR03345 566 ERVIGQDHALEAIAERIRTARAGLEDPRKPLGVFLLVGPSGVGKTETALALAEL--LYGGEQNLITINMSEFQEAH---- 639 (852)
T ss_pred CeEcChHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCCCHHHHHHHHHHH--HhCCCcceEEEeHHHhhhhh----
Confidence 468999999999988885421 111334568899999999999999888652 21111122222222211111
Q ss_pred HHHHHcCCC--CCCCccHHHHHHHHHHHHhCCceEEEEeCCCCCCccChHHHHHhhcCC
Q 047321 181 AIIEGLGVS--AFGLSEFESLMKQIQEYITGKKIFLVLDDVWDGDYKKWDPFFSCLKNG 237 (807)
Q Consensus 181 ~i~~~l~~~--~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~ 237 (807)
.+.+-++.. ..+..+...+...++ +...-+|+||++...+...++.+...+..+
T Consensus 640 ~~~~l~g~~~gyvg~~~~g~L~~~v~---~~p~svvllDEieka~~~v~~~Llq~ld~g 695 (852)
T TIGR03345 640 TVSRLKGSPPGYVGYGEGGVLTEAVR---RKPYSVVLLDEVEKAHPDVLELFYQVFDKG 695 (852)
T ss_pred hhccccCCCCCcccccccchHHHHHH---hCCCcEEEEechhhcCHHHHHHHHHHhhcc
Confidence 111112211 111112222333332 245669999999776777777787777665
No 336
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=97.19 E-value=0.00052 Score=66.13 Aligned_cols=101 Identities=21% Similarity=0.409 Sum_probs=51.5
Q ss_pred CceEEEEEccCCChHHHHHHHHHcCcccccccceEEEEEeCCCCCHHHHHHHHHHHcCCCCCCCccHHHHHHHHHHHHhC
Q 047321 130 GLDVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSNTFEEISVAKAIIEGLGVSAFGLSEFESLMKQIQEYITG 209 (807)
Q Consensus 130 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~ 209 (807)
...-+.|+|+.|+|||.||..+.+.. +...+ .+.|+. ..+++..+-. .. ........ + +.+.
T Consensus 46 ~~~~l~l~G~~G~GKThLa~ai~~~~-~~~g~-~v~f~~------~~~L~~~l~~----~~-~~~~~~~~---~-~~l~- 107 (178)
T PF01695_consen 46 NGENLILYGPPGTGKTHLAVAIANEA-IRKGY-SVLFIT------ASDLLDELKQ----SR-SDGSYEEL---L-KRLK- 107 (178)
T ss_dssp C--EEEEEESTTSSHHHHHHHHHHHH-HHTT---EEEEE------HHHHHHHHHC----CH-CCTTHCHH---H-HHHH-
T ss_pred cCeEEEEEhhHhHHHHHHHHHHHHHh-ccCCc-ceeEee------cCceeccccc----cc-cccchhhh---c-Cccc-
Confidence 34569999999999999999998732 22222 345554 3344444322 11 11122222 2 2233
Q ss_pred CceEEEEeCCCCCCccChHH--HHHhhcCC-CCCcEEEEEcCC
Q 047321 210 KKIFLVLDDVWDGDYKKWDP--FFSCLKNG-HHESKILITTHD 249 (807)
Q Consensus 210 k~~LlVlDdv~~~~~~~~~~--l~~~l~~~-~~gs~IliTTR~ 249 (807)
+--||||||+-......|.. +...+... .++ .+||||..
T Consensus 108 ~~dlLilDDlG~~~~~~~~~~~l~~ii~~R~~~~-~tIiTSN~ 149 (178)
T PF01695_consen 108 RVDLLILDDLGYEPLSEWEAELLFEIIDERYERK-PTIITSNL 149 (178)
T ss_dssp TSSCEEEETCTSS---HHHHHCTHHHHHHHHHT--EEEEEESS
T ss_pred cccEecccccceeeecccccccchhhhhHhhccc-CeEeeCCC
Confidence 45688899996654444443 33333322 233 47778764
No 337
>PRK09183 transposase/IS protein; Provisional
Probab=97.18 E-value=0.0025 Score=65.49 Aligned_cols=102 Identities=18% Similarity=0.228 Sum_probs=53.2
Q ss_pred CceEEEEEccCCChHHHHHHHHHcCcccccccceEEEEEeCCCCCHHHHHHHHHHHcCCCCCCCccHHHHHHHHHHHHhC
Q 047321 130 GLDVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSNTFEEISVAKAIIEGLGVSAFGLSEFESLMKQIQEYITG 209 (807)
Q Consensus 130 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~ 209 (807)
....+.|+|++|+|||+||..+..... ...+ .+.+++ ...+...+...... .. ....+.+. ..
T Consensus 101 ~~~~v~l~Gp~GtGKThLa~al~~~a~-~~G~-~v~~~~------~~~l~~~l~~a~~~-----~~---~~~~~~~~-~~ 163 (259)
T PRK09183 101 RNENIVLLGPSGVGKTHLAIALGYEAV-RAGI-KVRFTT------AADLLLQLSTAQRQ-----GR---YKTTLQRG-VM 163 (259)
T ss_pred cCCeEEEEeCCCCCHHHHHHHHHHHHH-HcCC-eEEEEe------HHHHHHHHHHHHHC-----Cc---HHHHHHHH-hc
Confidence 345688999999999999999976322 1222 233332 22333332221110 01 11222222 24
Q ss_pred CceEEEEeCCCCCCccChH--HHHHhhcCC-CCCcEEEEEcCC
Q 047321 210 KKIFLVLDDVWDGDYKKWD--PFFSCLKNG-HHESKILITTHD 249 (807)
Q Consensus 210 k~~LlVlDdv~~~~~~~~~--~l~~~l~~~-~~gs~IliTTR~ 249 (807)
+.-++|+||+.......+. .+...+... ..++ +||||..
T Consensus 164 ~~dlLiiDdlg~~~~~~~~~~~lf~li~~r~~~~s-~iiTsn~ 205 (259)
T PRK09183 164 APRLLIIDEIGYLPFSQEEANLFFQVIAKRYEKGS-MILTSNL 205 (259)
T ss_pred CCCEEEEcccccCCCChHHHHHHHHHHHHHHhcCc-EEEecCC
Confidence 5669999999654333333 344444332 2355 7788764
No 338
>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair]
Probab=97.18 E-value=0.0033 Score=64.15 Aligned_cols=171 Identities=18% Similarity=0.211 Sum_probs=100.1
Q ss_pred ccccccchHHHHHHHHhCCCCCCCCCceEEEEEccCCChHHHHHHHHHcC-cccccccceEEEEEeCCCCCHH-HHHHHH
Q 047321 105 GVCGRVDEKNELLSKLLCGSSEQQKGLDVISLVGLGGIGKTTLAQLAYNN-DEVKRNFEKVIWVCVSNTFEEI-SVAKAI 182 (807)
Q Consensus 105 ~~vGR~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~-~~~~~~f~~~~wv~~~~~~~~~-~~~~~i 182 (807)
.++|-.++..++-.++....- .+...-|.|+|+.|.|||+|...+..+ +++.++| +-|........+ -.++.|
T Consensus 25 ~l~g~~~~~~~l~~~lkqt~~--~gEsnsviiigprgsgkT~li~~~Ls~~q~~~E~~---l~v~Lng~~~~dk~al~~I 99 (408)
T KOG2228|consen 25 NLFGVQDEQKHLSELLKQTIL--HGESNSVIIIGPRGSGKTILIDTRLSDIQENGENF---LLVRLNGELQTDKIALKGI 99 (408)
T ss_pred ceeehHHHHHHHHHHHHHHHH--hcCCCceEEEccCCCCceEeeHHHHhhHHhcCCeE---EEEEECccchhhHHHHHHH
Confidence 488998888888888754321 234557889999999999999888775 2233343 334444443332 235555
Q ss_pred HHHcCCC----CCCCccHHHHHHHHHHHHh------CCceEEEEeCCCCCCccChHHHHHh-hc----CCCCCcEEEEEc
Q 047321 183 IEGLGVS----AFGLSEFESLMKQIQEYIT------GKKIFLVLDDVWDGDYKKWDPFFSC-LK----NGHHESKILITT 247 (807)
Q Consensus 183 ~~~l~~~----~~~~~~~~~~~~~l~~~l~------~k~~LlVlDdv~~~~~~~~~~l~~~-l~----~~~~gs~IliTT 247 (807)
.+++..+ .....+..+....+-..|+ +-++++|+|+.+-.-...-+.+... |. ...|-+-|-+||
T Consensus 100 ~rql~~e~~~~~k~~gsfte~l~~lL~~L~~~~~~t~~~ViFIldEfDlf~~h~rQtllYnlfDisqs~r~Piciig~Tt 179 (408)
T KOG2228|consen 100 TRQLALELNRIVKSFGSFTENLSKLLEALKKGDETTSGKVIFILDEFDLFAPHSRQTLLYNLFDISQSARAPICIIGVTT 179 (408)
T ss_pred HHHHHHHHhhhheeecccchhHHHHHHHHhcCCCCCCceEEEEeehhhccccchhhHHHHHHHHHHhhcCCCeEEEEeec
Confidence 5554322 1122223333344444443 2368999998754432233332222 21 235667788999
Q ss_pred CCH-------HHHHHhCCCceEeCCCCChhhHHHHHHHHH
Q 047321 248 HDR-------SVALQLGSIDIIPVKELGEGECWLLFKQIA 280 (807)
Q Consensus 248 R~~-------~v~~~~~~~~~~~l~~L~~~~~~~Lf~~~a 280 (807)
|-. .|-.......++-++.++-++-..++++..
T Consensus 180 rld~lE~LEKRVKSRFshr~I~m~~~~~l~~yv~l~r~ll 219 (408)
T KOG2228|consen 180 RLDILELLEKRVKSRFSHRVIFMLPSLPLGDYVDLYRKLL 219 (408)
T ss_pred cccHHHHHHHHHHhhcccceeeccCCCChHHHHHHHHHHh
Confidence 963 233333444467778888888888888765
No 339
>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional
Probab=97.18 E-value=0.0038 Score=66.62 Aligned_cols=62 Identities=13% Similarity=0.080 Sum_probs=42.8
Q ss_pred HHHHHHHHHHHhCCceEEEEeCCCCC-CccChHHHHHhhcCC--CCCcEEEEEcCCHHHHHHhCC
Q 047321 197 ESLMKQIQEYITGKKIFLVLDDVWDG-DYKKWDPFFSCLKNG--HHESKILITTHDRSVALQLGS 258 (807)
Q Consensus 197 ~~~~~~l~~~l~~k~~LlVlDdv~~~-~~~~~~~l~~~l~~~--~~gs~IliTTR~~~v~~~~~~ 258 (807)
....-.+.+.+..++-+||+|+.... |......+...+... ..|..||++|++..++..+..
T Consensus 159 q~QRv~iArAL~~~P~lLilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~~~~~~ad 223 (327)
T PRK11308 159 QRQRIAIARALMLDPDVVVADEPVSALDVSVQAQVLNLMMDLQQELGLSYVFISHDLSVVEHIAD 223 (327)
T ss_pred HHHHHHHHHHHHcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCC
Confidence 33344567778888899999999665 444445555555432 246789999999988876543
No 340
>CHL00131 ycf16 sulfate ABC transporter protein; Validated
Probab=97.18 E-value=0.0047 Score=63.62 Aligned_cols=61 Identities=16% Similarity=0.143 Sum_probs=41.9
Q ss_pred HHHHHHHHHHHHhCCceEEEEeCCCCC-CccChHHHHHhhcCC-CCCcEEEEEcCCHHHHHHh
Q 047321 196 FESLMKQIQEYITGKKIFLVLDDVWDG-DYKKWDPFFSCLKNG-HHESKILITTHDRSVALQL 256 (807)
Q Consensus 196 ~~~~~~~l~~~l~~k~~LlVlDdv~~~-~~~~~~~l~~~l~~~-~~gs~IliTTR~~~v~~~~ 256 (807)
.+...-.+.+.+..++-++++|++... |....+.+...+... ..|..||++|++.......
T Consensus 155 G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~~tH~~~~~~~~ 217 (252)
T CHL00131 155 GEKKRNEILQMALLDSELAILDETDSGLDIDALKIIAEGINKLMTSENSIILITHYQRLLDYI 217 (252)
T ss_pred HHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHhh
Confidence 334444577778889999999999765 444555565555432 2467799999998876543
No 341
>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.
Probab=97.17 E-value=0.0037 Score=64.39 Aligned_cols=60 Identities=15% Similarity=0.257 Sum_probs=40.2
Q ss_pred HHHHHHHHHHHhCCceEEEEeCCCCC-CccChHHHHHhhcCC--CCCcEEEEEcCCHHHHHHh
Q 047321 197 ESLMKQIQEYITGKKIFLVLDDVWDG-DYKKWDPFFSCLKNG--HHESKILITTHDRSVALQL 256 (807)
Q Consensus 197 ~~~~~~l~~~l~~k~~LlVlDdv~~~-~~~~~~~l~~~l~~~--~~gs~IliTTR~~~v~~~~ 256 (807)
+...-.+.+.+-.++-++++|++... |......+...+... ..|..||++|++......+
T Consensus 151 ~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~~ 213 (252)
T TIGR03005 151 QQQRVAIARALAMRPKVMLFDEVTSALDPELVGEVLNVIRRLASEHDLTMLLVTHEMGFAREF 213 (252)
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHh
Confidence 33344567777788889999999765 444455565555543 2367899999998765443
No 342
>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.17 E-value=0.0043 Score=65.19 Aligned_cols=61 Identities=18% Similarity=0.139 Sum_probs=41.6
Q ss_pred HHHHHHHHHHHhCCceEEEEeCCCCC-CccChHHHHHhhcCC--CCCcEEEEEcCCHHHHHHhC
Q 047321 197 ESLMKQIQEYITGKKIFLVLDDVWDG-DYKKWDPFFSCLKNG--HHESKILITTHDRSVALQLG 257 (807)
Q Consensus 197 ~~~~~~l~~~l~~k~~LlVlDdv~~~-~~~~~~~l~~~l~~~--~~gs~IliTTR~~~v~~~~~ 257 (807)
+...-.+.+.+..++-++++|++... |...-..+...+... ..|..||++|++.+.+..+.
T Consensus 150 q~qrv~lAraL~~~P~llllDEPt~~LD~~~~~~l~~~L~~l~~~~g~tviiitHd~~~~~~~~ 213 (290)
T PRK13634 150 QMRRVAIAGVLAMEPEVLVLDEPTAGLDPKGRKEMMEMFYKLHKEKGLTTVLVTHSMEDAARYA 213 (290)
T ss_pred HHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhC
Confidence 33444577888889999999999765 444444455555443 23678999999988765543
No 343
>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein. This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.
Probab=97.17 E-value=0.005 Score=63.53 Aligned_cols=60 Identities=12% Similarity=0.130 Sum_probs=41.1
Q ss_pred HHHHHHHHHHhCCceEEEEeCCCCC-CccChHHHHHhhcCC-CCCcEEEEEcCCHHHHHHhC
Q 047321 198 SLMKQIQEYITGKKIFLVLDDVWDG-DYKKWDPFFSCLKNG-HHESKILITTHDRSVALQLG 257 (807)
Q Consensus 198 ~~~~~l~~~l~~k~~LlVlDdv~~~-~~~~~~~l~~~l~~~-~~gs~IliTTR~~~v~~~~~ 257 (807)
...-.+.+.+..++-+++||++... |....+.+...+... ..|..||++|++........
T Consensus 143 ~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~ 204 (256)
T TIGR03873 143 RQRVHVARALAQEPKLLLLDEPTNHLDVRAQLETLALVRELAATGVTVVAALHDLNLAASYC 204 (256)
T ss_pred HHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhC
Confidence 3344467777788899999999764 455555566655543 24677999999988765543
No 344
>PRK14264 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.16 E-value=0.005 Score=65.21 Aligned_cols=60 Identities=12% Similarity=0.109 Sum_probs=41.0
Q ss_pred HHHHHHHHHhCCceEEEEeCCCCC-CccChHHHHHhhcCCCCCcEEEEEcCCHHHHHHhCC
Q 047321 199 LMKQIQEYITGKKIFLVLDDVWDG-DYKKWDPFFSCLKNGHHESKILITTHDRSVALQLGS 258 (807)
Q Consensus 199 ~~~~l~~~l~~k~~LlVlDdv~~~-~~~~~~~l~~~l~~~~~gs~IliTTR~~~v~~~~~~ 258 (807)
..-.+.+.+..++-+++||++... |......+...+.....+..||++|++...+..+..
T Consensus 207 qrv~LAraL~~~p~lLLLDEPtsgLD~~~~~~l~~~L~~~~~~~tiiivtH~~~~i~~~~d 267 (305)
T PRK14264 207 QRLCIARCLAVDPEVILMDEPASALDPIATSKIEDLIEELAEEYTVVVVTHNMQQAARISD 267 (305)
T ss_pred HHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEEcCHHHHHHhcC
Confidence 344466777788899999999665 445555566665544334569999999887665443
No 345
>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.16 E-value=0.0028 Score=66.36 Aligned_cols=61 Identities=20% Similarity=0.173 Sum_probs=41.3
Q ss_pred HHHHHHHHHHHhCCceEEEEeCCCCC-CccChHHHHHhhcCC-CCCcEEEEEcCCHHHHHHhC
Q 047321 197 ESLMKQIQEYITGKKIFLVLDDVWDG-DYKKWDPFFSCLKNG-HHESKILITTHDRSVALQLG 257 (807)
Q Consensus 197 ~~~~~~l~~~l~~k~~LlVlDdv~~~-~~~~~~~l~~~l~~~-~~gs~IliTTR~~~v~~~~~ 257 (807)
+...-.+.+.+..++-+++||++... |....+.+...+... ..|..||++|++.+.+..+.
T Consensus 150 ~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivsH~~~~~~~~~ 212 (280)
T PRK13649 150 QMRRVAIAGILAMEPKILVLDEPTAGLDPKGRKELMTLFKKLHQSGMTIVLVTHLMDDVANYA 212 (280)
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeccHHHHHHhC
Confidence 33344567777888999999999765 444445555555432 24678999999988665543
No 346
>cd03299 ABC_ModC_like Archeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.16 E-value=0.0044 Score=62.99 Aligned_cols=61 Identities=23% Similarity=0.198 Sum_probs=40.4
Q ss_pred HHHHHHHHHHHHhCCceEEEEeCCCCC-CccChHHHHHhhcCC--CCCcEEEEEcCCHHHHHHh
Q 047321 196 FESLMKQIQEYITGKKIFLVLDDVWDG-DYKKWDPFFSCLKNG--HHESKILITTHDRSVALQL 256 (807)
Q Consensus 196 ~~~~~~~l~~~l~~k~~LlVlDdv~~~-~~~~~~~l~~~l~~~--~~gs~IliTTR~~~v~~~~ 256 (807)
.+...-.+.+.+..++-++++|++... |...-+.+...+... ..|..||++|++.......
T Consensus 133 G~~qrl~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~~~~~~~~tili~tH~~~~~~~~ 196 (235)
T cd03299 133 GEQQRVAIARALVVNPKILLLDEPFSALDVRTKEKLREELKKIRKEFGVTVLHVTHDFEEAWAL 196 (235)
T ss_pred HHHHHHHHHHHHHcCCCEEEECCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHh
Confidence 344445577778888899999999664 444444455555432 2367899999998765443
No 347
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=97.16 E-value=0.0034 Score=63.60 Aligned_cols=58 Identities=16% Similarity=0.145 Sum_probs=39.7
Q ss_pred HHHHHHHHhCCceEEEEeCCCCC-CccChHHHHHhhcCCC--CCcEEEEEcCCHHHHHHhC
Q 047321 200 MKQIQEYITGKKIFLVLDDVWDG-DYKKWDPFFSCLKNGH--HESKILITTHDRSVALQLG 257 (807)
Q Consensus 200 ~~~l~~~l~~k~~LlVlDdv~~~-~~~~~~~l~~~l~~~~--~gs~IliTTR~~~v~~~~~ 257 (807)
.-.+.+.+..++-++++|++... |......+...+.... .|..||++|++.+.+..+.
T Consensus 139 rv~la~al~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~ 199 (230)
T TIGR03410 139 QLAIARALVTRPKLLLLDEPTEGIQPSIIKDIGRVIRRLRAEGGMAILLVEQYLDFARELA 199 (230)
T ss_pred HHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHhC
Confidence 34466777788899999999665 4455555666555432 3677999999987665443
No 348
>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=97.15 E-value=0.0032 Score=64.19 Aligned_cols=57 Identities=19% Similarity=0.252 Sum_probs=38.3
Q ss_pred HHHHHHHHhCCceEEEEeCCCCC-CccChHHHHHhhcCC-CCCcEEEEEcCCHHHHHHh
Q 047321 200 MKQIQEYITGKKIFLVLDDVWDG-DYKKWDPFFSCLKNG-HHESKILITTHDRSVALQL 256 (807)
Q Consensus 200 ~~~l~~~l~~k~~LlVlDdv~~~-~~~~~~~l~~~l~~~-~~gs~IliTTR~~~v~~~~ 256 (807)
.-.+.+.+..++-+++||++... |......+...+... ..|..||++|++.+....+
T Consensus 145 rl~la~al~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~ 203 (237)
T PRK11614 145 MLAIGRALMSQPRLLLLDEPSLGLAPIIIQQIFDTIEQLREQGMTIFLVEQNANQALKL 203 (237)
T ss_pred HHHHHHHHHhCCCEEEEcCccccCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHHHHHhh
Confidence 33456667778889999999765 555555565555432 3467899999997654443
No 349
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=97.15 E-value=0.0047 Score=70.59 Aligned_cols=128 Identities=18% Similarity=0.199 Sum_probs=73.9
Q ss_pred CceEEEEEccCCChHHHHHHHHHcCccc-cc--ccc---------------eEEEEEeCC----CCCH------------
Q 047321 130 GLDVISLVGLGGIGKTTLAQLAYNNDEV-KR--NFE---------------KVIWVCVSN----TFEE------------ 175 (807)
Q Consensus 130 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~-~~--~f~---------------~~~wv~~~~----~~~~------------ 175 (807)
.-.+++|+|++|+|||||++.++.-... .+ .|+ .+.|+.-.. ..++
T Consensus 36 ~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~ 115 (510)
T PRK15439 36 AGEVHALLGGNGAGKSTLMKIIAGIVPPDSGTLEIGGNPCARLTPAKAHQLGIYLVPQEPLLFPNLSVKENILFGLPKRQ 115 (510)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHHHhCCEEEEeccCccCCCCcHHHHhhcccccch
Confidence 4568999999999999999998653110 00 000 122332111 0111
Q ss_pred --HHHHHHHHHHcCCCCC------CCccHHHHHHHHHHHHhCCceEEEEeCCCCC-CccChHHHHHhhcCC-CCCcEEEE
Q 047321 176 --ISVAKAIIEGLGVSAF------GLSEFESLMKQIQEYITGKKIFLVLDDVWDG-DYKKWDPFFSCLKNG-HHESKILI 245 (807)
Q Consensus 176 --~~~~~~i~~~l~~~~~------~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~-~~~~~~~l~~~l~~~-~~gs~Ili 245 (807)
.+....+++.++.... .....+...-.+.+.+..++-+++||++.+. |...-..+...+... ..|..||+
T Consensus 116 ~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~aL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii 195 (510)
T PRK15439 116 ASMQKMKQLLAALGCQLDLDSSAGSLEVADRQIVEILRGLMRDSRILILDEPTASLTPAETERLFSRIRELLAQGVGIVF 195 (510)
T ss_pred HHHHHHHHHHHHcCCCccccCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEE
Confidence 1123344555554321 1223344455577888889999999999765 444444455554432 34678999
Q ss_pred EcCCHHHHHHhC
Q 047321 246 TTHDRSVALQLG 257 (807)
Q Consensus 246 TTR~~~v~~~~~ 257 (807)
+|++.+.+..+.
T Consensus 196 vtHd~~~~~~~~ 207 (510)
T PRK15439 196 ISHKLPEIRQLA 207 (510)
T ss_pred EeCCHHHHHHhC
Confidence 999987665543
No 350
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=97.15 E-value=5.4e-05 Score=78.82 Aligned_cols=116 Identities=19% Similarity=0.301 Sum_probs=71.5
Q ss_pred cceEeccCCcCceeeCcccCCCCCCCCCCCCCCCCCCccccCcccccccccCCCccccchhhhccccCCCCCCcccEEEE
Q 047321 635 LKKLELRDLESVKRVGNEFLGIEESSEDDPSSSSSSPSVIAFPKLKSLEIDGMKELEEWNYRITRKENISIMPRLSSLQI 714 (807)
Q Consensus 635 L~~L~L~~~~~l~~i~~~~~~~~~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~l~~L~~L~l 714 (807)
|+.|-+++|..++..+-...+ .+.+.|+.|++..|.....-.. .....+.|.|+.|.+
T Consensus 322 L~~l~l~~c~~fsd~~ft~l~------------------rn~~~Le~l~~e~~~~~~d~tL----~sls~~C~~lr~lsl 379 (483)
T KOG4341|consen 322 LQVLELSGCQQFSDRGFTMLG------------------RNCPHLERLDLEECGLITDGTL----ASLSRNCPRLRVLSL 379 (483)
T ss_pred eEEEeccccchhhhhhhhhhh------------------cCChhhhhhcccccceehhhhH----hhhccCCchhccCCh
Confidence 899999998877665533221 2677788888777654433222 122346778888888
Q ss_pred ccCCCCCCC-----cccccCCCCccEEeeccCcccccccccccccCCCCCCCCeeeeccCCCcccC
Q 047321 715 MNCRKLKAL-----PDYLLQTIALQKLSIYSCDLLEELPILEDRRTTDIPRLSSLAIWYCPKLKVL 775 (807)
Q Consensus 715 ~~c~~L~~l-----p~~l~~l~~L~~L~l~~c~~l~~lP~~~~~~~~~l~~L~~L~i~~c~~l~~l 775 (807)
+.|...+.- ..+-.....|+.|.+++|+.+.+-- + +....+++|+.+++.+|.....=
T Consensus 380 shce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~-L--e~l~~c~~Leri~l~~~q~vtk~ 442 (483)
T KOG4341|consen 380 SHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDAT-L--EHLSICRNLERIELIDCQDVTKE 442 (483)
T ss_pred hhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHH-H--HHHhhCcccceeeeechhhhhhh
Confidence 877555432 2222345567888888887665421 1 23445677888888887776543
No 351
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.15 E-value=0.0029 Score=63.48 Aligned_cols=58 Identities=26% Similarity=0.272 Sum_probs=39.9
Q ss_pred HHHHHHHHHhCCceEEEEeCCCCC-CccChHHHHHhhcCC--CCCcEEEEEcCCHHHHHHh
Q 047321 199 LMKQIQEYITGKKIFLVLDDVWDG-DYKKWDPFFSCLKNG--HHESKILITTHDRSVALQL 256 (807)
Q Consensus 199 ~~~~l~~~l~~k~~LlVlDdv~~~-~~~~~~~l~~~l~~~--~~gs~IliTTR~~~v~~~~ 256 (807)
..-.|...+.-++-++|||+.... |...-..+...+..- ..|..||++||+-+.....
T Consensus 145 qRvaIA~vLa~~P~iliLDEPta~LD~~~~~~l~~~l~~L~~~~~~tii~~tHd~~~~~~~ 205 (235)
T COG1122 145 QRVAIAGVLAMGPEILLLDEPTAGLDPKGRRELLELLKKLKEEGGKTIIIVTHDLELVLEY 205 (235)
T ss_pred eeHHhhHHHHcCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCCeEEEEeCcHHHHHhh
Confidence 344567777788999999999765 555555566666543 2356789999987765543
No 352
>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional
Probab=97.15 E-value=0.0041 Score=64.27 Aligned_cols=128 Identities=20% Similarity=0.161 Sum_probs=69.0
Q ss_pred CceEEEEEccCCChHHHHHHHHHcCcccc-c--ccceE-EEEE----eCCCCCHHH---------------H---HHHHH
Q 047321 130 GLDVISLVGLGGIGKTTLAQLAYNNDEVK-R--NFEKV-IWVC----VSNTFEEIS---------------V---AKAII 183 (807)
Q Consensus 130 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~-~--~f~~~-~wv~----~~~~~~~~~---------------~---~~~i~ 183 (807)
.-.+++|+|++|+|||||++.++.-.... + .++.. .++. +....++.+ . ...++
T Consensus 49 ~Ge~~~liG~NGsGKSTLlk~L~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l 128 (264)
T PRK13546 49 EGDVIGLVGINGSGKSTLSNIIGGSLSPTVGKVDRNGEVSVIAISAGLSGQLTGIENIEFKMLCMGFKRKEIKAMTPKII 128 (264)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEeEEecccCCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 45689999999999999999998642211 0 11111 1111 111111111 1 11222
Q ss_pred HHcCCCC------CCCccHHHHHHHHHHHHhCCceEEEEeCCCCC-CccChHHHHHhhcCC-CCCcEEEEEcCCHHHHHH
Q 047321 184 EGLGVSA------FGLSEFESLMKQIQEYITGKKIFLVLDDVWDG-DYKKWDPFFSCLKNG-HHESKILITTHDRSVALQ 255 (807)
Q Consensus 184 ~~l~~~~------~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~-~~~~~~~l~~~l~~~-~~gs~IliTTR~~~v~~~ 255 (807)
+.++... ......+...-.+.+.+..++-+++||++.+. |...-..+...+... ..|..||++|++......
T Consensus 129 ~~~~l~~~~~~~~~~LS~Gq~qrv~Laral~~~p~iLlLDEPt~gLD~~~~~~l~~~L~~~~~~g~tiIiisH~~~~i~~ 208 (264)
T PRK13546 129 EFSELGEFIYQPVKKYSSGMRAKLGFSINITVNPDILVIDEALSVGDQTFAQKCLDKIYEFKEQNKTIFFVSHNLGQVRQ 208 (264)
T ss_pred HHcCCchhhcCCcccCCHHHHHHHHHHHHHhhCCCEEEEeCccccCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHH
Confidence 2222211 11122233334467777788899999999654 433333444444332 346789999999877655
Q ss_pred hC
Q 047321 256 LG 257 (807)
Q Consensus 256 ~~ 257 (807)
+.
T Consensus 209 ~~ 210 (264)
T PRK13546 209 FC 210 (264)
T ss_pred Hc
Confidence 43
No 353
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=97.15 E-value=0.0034 Score=63.58 Aligned_cols=58 Identities=19% Similarity=0.180 Sum_probs=40.1
Q ss_pred HHHHHHHHHhCCceEEEEeCCCCC-CccChHHHHHhhcCCC--CCcEEEEEcCCHHHHHHh
Q 047321 199 LMKQIQEYITGKKIFLVLDDVWDG-DYKKWDPFFSCLKNGH--HESKILITTHDRSVALQL 256 (807)
Q Consensus 199 ~~~~l~~~l~~k~~LlVlDdv~~~-~~~~~~~l~~~l~~~~--~gs~IliTTR~~~v~~~~ 256 (807)
..-.+.+.+-.++-+++||++... |....+.+...+.... .|..||++|++...+...
T Consensus 152 qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~ 212 (228)
T cd03257 152 QRVAIARALALNPKLLIADEPTSALDVSVQAQILDLLKKLQEELGLTLLFITHDLGVVAKI 212 (228)
T ss_pred HHHHHHHHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHh
Confidence 344466777788899999999765 4445555666665432 267899999998776543
No 354
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=97.15 E-value=0.0038 Score=71.79 Aligned_cols=59 Identities=19% Similarity=0.211 Sum_probs=41.5
Q ss_pred HHHHHHHHHHHhCCceEEEEeCCCCC-CccChHHHHHhhcCCCCCcEEEEEcCCHHHHHHhC
Q 047321 197 ESLMKQIQEYITGKKIFLVLDDVWDG-DYKKWDPFFSCLKNGHHESKILITTHDRSVALQLG 257 (807)
Q Consensus 197 ~~~~~~l~~~l~~k~~LlVlDdv~~~-~~~~~~~l~~~l~~~~~gs~IliTTR~~~v~~~~~ 257 (807)
+...-.+.+.+..++-+++||++.+. |......+...+.. .|..||++|++......+.
T Consensus 160 q~qrv~lA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~--~~~tiiivsHd~~~~~~~~ 219 (530)
T PRK15064 160 WKLRVLLAQALFSNPDILLLDEPTNNLDINTIRWLEDVLNE--RNSTMIIISHDRHFLNSVC 219 (530)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHh--CCCeEEEEeCCHHHHHhhc
Confidence 33445577777888999999999775 44455556666653 3567999999988765544
No 355
>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.15 E-value=0.0032 Score=66.06 Aligned_cols=61 Identities=20% Similarity=0.205 Sum_probs=42.3
Q ss_pred HHHHHHHHHHHHhCCceEEEEeCCCCC-CccChHHHHHhhcCC--CCCcEEEEEcCCHHHHHHh
Q 047321 196 FESLMKQIQEYITGKKIFLVLDDVWDG-DYKKWDPFFSCLKNG--HHESKILITTHDRSVALQL 256 (807)
Q Consensus 196 ~~~~~~~l~~~l~~k~~LlVlDdv~~~-~~~~~~~l~~~l~~~--~~gs~IliTTR~~~v~~~~ 256 (807)
.....-.+.+.+..++-++++|++... |......+...+... ..|..||++|++.+.+..+
T Consensus 148 Gq~qrv~iAraL~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~ 211 (287)
T PRK13637 148 GQKRRVAIAGVVAMEPKILILDEPTAGLDPKGRDEILNKIKELHKEYNMTIILVSHSMEDVAKL 211 (287)
T ss_pred HHHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHh
Confidence 334445577888889999999999765 555555566665543 2367899999997765443
No 356
>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional
Probab=97.14 E-value=0.0059 Score=65.40 Aligned_cols=59 Identities=17% Similarity=0.224 Sum_probs=40.8
Q ss_pred HHHHHHHHhCCceEEEEeCCCCC-CccChHHHHHhhcCC--CCCcEEEEEcCCHHHHHHhCC
Q 047321 200 MKQIQEYITGKKIFLVLDDVWDG-DYKKWDPFFSCLKNG--HHESKILITTHDRSVALQLGS 258 (807)
Q Consensus 200 ~~~l~~~l~~k~~LlVlDdv~~~-~~~~~~~l~~~l~~~--~~gs~IliTTR~~~v~~~~~~ 258 (807)
.-.+.+.+..++-+||+|+.... |...-..+...+... ..|..||++|++..++..+..
T Consensus 166 Rv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~tii~itHdl~~v~~~~d 227 (330)
T PRK15093 166 KVMIAIALANQPRLLIADEPTNAMEPTTQAQIFRLLTRLNQNNNTTILLISHDLQMLSQWAD 227 (330)
T ss_pred HHHHHHHHHCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCC
Confidence 34467778889999999999664 433444455555432 247789999999888766543
No 357
>PRK04296 thymidine kinase; Provisional
Probab=97.14 E-value=0.0013 Score=64.27 Aligned_cols=113 Identities=15% Similarity=0.088 Sum_probs=61.9
Q ss_pred eEEEEEccCCChHHHHHHHHHcCcccccccceEEEEEeCCCCCHHHHHHHHHHHcCCCCCC--CccHHHHHHHHHHHHhC
Q 047321 132 DVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSNTFEEISVAKAIIEGLGVSAFG--LSEFESLMKQIQEYITG 209 (807)
Q Consensus 132 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~--~~~~~~~~~~l~~~l~~ 209 (807)
.++.|+|+.|.||||+|..++.. ...+-..++.+ ...++.......++..++..... ....+++...+.+ ..+
T Consensus 3 ~i~litG~~GsGKTT~~l~~~~~--~~~~g~~v~i~--k~~~d~~~~~~~i~~~lg~~~~~~~~~~~~~~~~~~~~-~~~ 77 (190)
T PRK04296 3 KLEFIYGAMNSGKSTELLQRAYN--YEERGMKVLVF--KPAIDDRYGEGKVVSRIGLSREAIPVSSDTDIFELIEE-EGE 77 (190)
T ss_pred EEEEEECCCCCHHHHHHHHHHHH--HHHcCCeEEEE--eccccccccCCcEecCCCCcccceEeCChHHHHHHHHh-hCC
Confidence 57889999999999999887763 22222223333 12222222233445555432211 2234444555544 334
Q ss_pred CceEEEEeCCCCCCccChHHHHHhhcCCCCCcEEEEEcCCHH
Q 047321 210 KKIFLVLDDVWDGDYKKWDPFFSCLKNGHHESKILITTHDRS 251 (807)
Q Consensus 210 k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~IliTTR~~~ 251 (807)
+.-+||+|++..-+.++...+...+ ...|..||+|.++.+
T Consensus 78 ~~dvviIDEaq~l~~~~v~~l~~~l--~~~g~~vi~tgl~~~ 117 (190)
T PRK04296 78 KIDCVLIDEAQFLDKEQVVQLAEVL--DDLGIPVICYGLDTD 117 (190)
T ss_pred CCCEEEEEccccCCHHHHHHHHHHH--HHcCCeEEEEecCcc
Confidence 5569999999443222222333332 345778999998754
No 358
>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed
Probab=97.14 E-value=0.0048 Score=67.36 Aligned_cols=63 Identities=13% Similarity=0.077 Sum_probs=41.8
Q ss_pred HHHHHHHHHHHHhCCceEEEEeCCCCC-CccChHHHHHhhcCC-CCCcEEEEEcCCHHHHHHhCC
Q 047321 196 FESLMKQIQEYITGKKIFLVLDDVWDG-DYKKWDPFFSCLKNG-HHESKILITTHDRSVALQLGS 258 (807)
Q Consensus 196 ~~~~~~~l~~~l~~k~~LlVlDdv~~~-~~~~~~~l~~~l~~~-~~gs~IliTTR~~~v~~~~~~ 258 (807)
.+...-.+.+.+-.++-+++||+.... |...-..+...+... ..|..||++|++.+.+..+..
T Consensus 143 GerQRv~IArAL~~~P~iLLLDEPtsgLD~~~~~~l~~lL~~l~~~g~TIIivsHdl~~~~~~ad 207 (402)
T PRK09536 143 GERQRVLLARALAQATPVLLLDEPTASLDINHQVRTLELVRRLVDDGKTAVAAIHDLDLAARYCD 207 (402)
T ss_pred HHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCC
Confidence 344445577888889999999999664 433333444444432 246689999999888765443
No 359
>PRK13633 cobalt transporter ATP-binding subunit; Provisional
Probab=97.14 E-value=0.0029 Score=66.13 Aligned_cols=59 Identities=14% Similarity=0.104 Sum_probs=41.7
Q ss_pred HHHHHHHHHHHhCCceEEEEeCCCCC-CccChHHHHHhhcCC--CCCcEEEEEcCCHHHHHH
Q 047321 197 ESLMKQIQEYITGKKIFLVLDDVWDG-DYKKWDPFFSCLKNG--HHESKILITTHDRSVALQ 255 (807)
Q Consensus 197 ~~~~~~l~~~l~~k~~LlVlDdv~~~-~~~~~~~l~~~l~~~--~~gs~IliTTR~~~v~~~ 255 (807)
+...-.+.+.+..++-++++|++... |......+...+... ..|..||++|++.+.+..
T Consensus 149 ~~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvtH~~~~~~~ 210 (280)
T PRK13633 149 QKQRVAIAGILAMRPECIIFDEPTAMLDPSGRREVVNTIKELNKKYGITIILITHYMEEAVE 210 (280)
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecChHHHhc
Confidence 33344567778889999999999765 555555566666543 247789999999887654
No 360
>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Probab=97.13 E-value=0.0019 Score=63.93 Aligned_cols=61 Identities=16% Similarity=0.224 Sum_probs=40.1
Q ss_pred HHHHHHhCCceEEEEeCCCCC-CccChH-HHHHhhcCCCC--CcEEEEEcCCHHHHHHhCCCceEeC
Q 047321 202 QIQEYITGKKIFLVLDDVWDG-DYKKWD-PFFSCLKNGHH--ESKILITTHDRSVALQLGSIDIIPV 264 (807)
Q Consensus 202 ~l~~~l~~k~~LlVlDdv~~~-~~~~~~-~l~~~l~~~~~--gs~IliTTR~~~v~~~~~~~~~~~l 264 (807)
.+.+.+..++-++++|++... |....+ .+...+..... |..||++|++...... ...++.+
T Consensus 131 ala~al~~~p~illlDEP~~~LD~~~~~~~l~~~l~~~~~~~~~~iiiitH~~~~~~~--~d~i~~l 195 (204)
T cd03240 131 ALAETFGSNCGILALDEPTTNLDEENIEESLAEIIEERKSQKNFQLIVITHDEELVDA--ADHIYRV 195 (204)
T ss_pred HHHHHhccCCCEEEEcCCccccCHHHHHHHHHHHHHHHHhccCCEEEEEEecHHHHhh--CCEEEEE
Confidence 456677788999999999664 444455 55555544322 5679999999877643 2344444
No 361
>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.13 E-value=0.005 Score=63.48 Aligned_cols=59 Identities=15% Similarity=0.081 Sum_probs=39.4
Q ss_pred HHHHHHHHHhCCceEEEEeCCCCC-CccChHHHHHhhcCCCCCcEEEEEcCCHHHHHHhC
Q 047321 199 LMKQIQEYITGKKIFLVLDDVWDG-DYKKWDPFFSCLKNGHHESKILITTHDRSVALQLG 257 (807)
Q Consensus 199 ~~~~l~~~l~~k~~LlVlDdv~~~-~~~~~~~l~~~l~~~~~gs~IliTTR~~~v~~~~~ 257 (807)
..-.+.+.+-.++-+++||++... |...-..+...+.....+..||++|++.+.+..+.
T Consensus 157 qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tvii~sH~~~~~~~~~ 216 (254)
T PRK14273 157 QRLCIARTLAIEPNVILMDEPTSALDPISTGKIEELIINLKESYTIIIVTHNMQQAGRIS 216 (254)
T ss_pred HHHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhC
Confidence 344466777778889999999665 44444445555544334567999999988765543
No 362
>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.13 E-value=0.0051 Score=63.31 Aligned_cols=57 Identities=16% Similarity=0.139 Sum_probs=39.2
Q ss_pred HHHHHHHHhCCceEEEEeCCCCC-CccChHHHHHhhcCCCCCcEEEEEcCCHHHHHHh
Q 047321 200 MKQIQEYITGKKIFLVLDDVWDG-DYKKWDPFFSCLKNGHHESKILITTHDRSVALQL 256 (807)
Q Consensus 200 ~~~l~~~l~~k~~LlVlDdv~~~-~~~~~~~l~~~l~~~~~gs~IliTTR~~~v~~~~ 256 (807)
.-.+.+.+..++-++++|++... |......+...+.....+..||++|++.......
T Consensus 156 rv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~ 213 (252)
T PRK14272 156 RLCIARALAVEPEILLMDEPTSALDPASTARIEDLMTDLKKVTTIIIVTHNMHQAARV 213 (252)
T ss_pred HHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHh
Confidence 34466677778889999999664 4444555666655444457799999998766543
No 363
>PRK13651 cobalt transporter ATP-binding subunit; Provisional
Probab=97.13 E-value=0.0052 Score=64.92 Aligned_cols=60 Identities=20% Similarity=0.264 Sum_probs=39.6
Q ss_pred HHHHHHHHHHHhCCceEEEEeCCCCC-CccChHHHHHhhcCC-CCCcEEEEEcCCHHHHHHh
Q 047321 197 ESLMKQIQEYITGKKIFLVLDDVWDG-DYKKWDPFFSCLKNG-HHESKILITTHDRSVALQL 256 (807)
Q Consensus 197 ~~~~~~l~~~l~~k~~LlVlDdv~~~-~~~~~~~l~~~l~~~-~~gs~IliTTR~~~v~~~~ 256 (807)
+...-.+.+.+..++-+|+||++... |...-..+...+... ..|..||++|++.+.+...
T Consensus 170 qkqrvalA~aL~~~P~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivtHd~~~~~~~ 231 (305)
T PRK13651 170 QKRRVALAGILAMEPDFLVFDEPTAGLDPQGVKEILEIFDNLNKQGKTIILVTHDLDNVLEW 231 (305)
T ss_pred HHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeeCHHHHHHh
Confidence 33344577788889999999999765 433334455544332 3477899999998755443
No 364
>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.13 E-value=0.0057 Score=63.02 Aligned_cols=58 Identities=14% Similarity=0.134 Sum_probs=38.5
Q ss_pred HHHHHHHHHhCCceEEEEeCCCCC-CccChHHHHHhhcCCCCCcEEEEEcCCHHHHHHh
Q 047321 199 LMKQIQEYITGKKIFLVLDDVWDG-DYKKWDPFFSCLKNGHHESKILITTHDRSVALQL 256 (807)
Q Consensus 199 ~~~~l~~~l~~k~~LlVlDdv~~~-~~~~~~~l~~~l~~~~~gs~IliTTR~~~v~~~~ 256 (807)
..-.+.+.+...+-+++||++... |....+.+...+.....+..||++|++.......
T Consensus 156 qrv~laral~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~~~tvii~sh~~~~~~~~ 214 (253)
T PRK14261 156 QRLCIARTLAVNPEVILMDEPCSALDPIATAKIEDLIEDLKKEYTVIIVTHNMQQAARV 214 (253)
T ss_pred HHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhhCceEEEEEcCHHHHHhh
Confidence 344466777778899999999665 4444455555554433346799999998766543
No 365
>PRK14235 phosphate transporter ATP-binding protein; Provisional
Probab=97.13 E-value=0.0049 Score=63.97 Aligned_cols=59 Identities=15% Similarity=0.095 Sum_probs=40.3
Q ss_pred HHHHHHHHHhCCceEEEEeCCCCC-CccChHHHHHhhcCCCCCcEEEEEcCCHHHHHHhC
Q 047321 199 LMKQIQEYITGKKIFLVLDDVWDG-DYKKWDPFFSCLKNGHHESKILITTHDRSVALQLG 257 (807)
Q Consensus 199 ~~~~l~~~l~~k~~LlVlDdv~~~-~~~~~~~l~~~l~~~~~gs~IliTTR~~~v~~~~~ 257 (807)
..-.+.+.+..++-+|+||++... |......+...+.....+..||++|++.+.+..+.
T Consensus 170 qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~l~~~~tiiivtH~~~~~~~~~ 229 (267)
T PRK14235 170 QRLCIARAIAVSPEVILMDEPCSALDPIATAKVEELIDELRQNYTIVIVTHSMQQAARVS 229 (267)
T ss_pred HHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHhcCCeEEEEEcCHHHHHhhC
Confidence 344466777788899999999665 45555556665554333567999999987765443
No 366
>PRK08939 primosomal protein DnaI; Reviewed
Probab=97.13 E-value=0.0022 Score=67.35 Aligned_cols=122 Identities=16% Similarity=0.212 Sum_probs=68.9
Q ss_pred cccchHHHHHHHHhCCCCCCCCCceEEEEEccCCChHHHHHHHHHcCcccccccceEEEEEeCCCCCHHHHHHHHHHHcC
Q 047321 108 GRVDEKNELLSKLLCGSSEQQKGLDVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSNTFEEISVAKAIIEGLG 187 (807)
Q Consensus 108 GR~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~ 187 (807)
+|....+...+++..-.. .....-+.|+|..|+|||.||..+++... ...+. +.++++ ..++..+.....
T Consensus 135 ~~~~~~~~~~~fi~~~~~--~~~~~gl~L~G~~G~GKThLa~Aia~~l~-~~g~~-v~~~~~------~~l~~~lk~~~~ 204 (306)
T PRK08939 135 DRLDALMAALDFLEAYPP--GEKVKGLYLYGDFGVGKSYLLAAIANELA-KKGVS-STLLHF------PEFIRELKNSIS 204 (306)
T ss_pred HHHHHHHHHHHHHHHhhc--cCCCCeEEEECCCCCCHHHHHHHHHHHHH-HcCCC-EEEEEH------HHHHHHHHHHHh
Confidence 444444445555543221 12446799999999999999999998432 22333 445543 344455544432
Q ss_pred CCCCCCccHHHHHHHHHHHHhCCceEEEEeCCCCCCccChHH--HHHhh-cCC-CCCcEEEEEcCC
Q 047321 188 VSAFGLSEFESLMKQIQEYITGKKIFLVLDDVWDGDYKKWDP--FFSCL-KNG-HHESKILITTHD 249 (807)
Q Consensus 188 ~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~--l~~~l-~~~-~~gs~IliTTR~ 249 (807)
.. +... .+.. + .+--||||||+..+....|.. +...+ ... ..+-.+|+||--
T Consensus 205 ~~-----~~~~---~l~~-l-~~~dlLiIDDiG~e~~s~~~~~~ll~~Il~~R~~~~~~ti~TSNl 260 (306)
T PRK08939 205 DG-----SVKE---KIDA-V-KEAPVLMLDDIGAEQMSSWVRDEVLGVILQYRMQEELPTFFTSNF 260 (306)
T ss_pred cC-----cHHH---HHHH-h-cCCCEEEEecCCCccccHHHHHHHHHHHHHHHHHCCCeEEEECCC
Confidence 11 1222 2222 2 356799999997766677764 54444 322 234457788753
No 367
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.13 E-value=0.0044 Score=64.53 Aligned_cols=61 Identities=15% Similarity=0.265 Sum_probs=41.1
Q ss_pred HHHHHHHHHHHhCCceEEEEeCCCCC-CccChHHHHHhhcCC-CCCcEEEEEcCCHHHHHHhC
Q 047321 197 ESLMKQIQEYITGKKIFLVLDDVWDG-DYKKWDPFFSCLKNG-HHESKILITTHDRSVALQLG 257 (807)
Q Consensus 197 ~~~~~~l~~~l~~k~~LlVlDdv~~~-~~~~~~~l~~~l~~~-~~gs~IliTTR~~~v~~~~~ 257 (807)
+...-.+.+.+..++-+++||++... |......+...+... ..|..||++|++.+....+.
T Consensus 141 ~~qrl~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~~ 203 (271)
T PRK13638 141 QKKRVAIAGALVLQARYLLLDEPTAGLDPAGRTQMIAIIRRIVAQGNHVIISSHDIDLIYEIS 203 (271)
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhC
Confidence 33344567778888999999999765 444444555555432 24677999999987765543
No 368
>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.12 E-value=0.0046 Score=63.58 Aligned_cols=60 Identities=15% Similarity=0.110 Sum_probs=41.0
Q ss_pred HHHHHHHHHHHhCCceEEEEeCCCCC-CccChHHHHHhhcCCCCCcEEEEEcCCHHHHHHh
Q 047321 197 ESLMKQIQEYITGKKIFLVLDDVWDG-DYKKWDPFFSCLKNGHHESKILITTHDRSVALQL 256 (807)
Q Consensus 197 ~~~~~~l~~~l~~k~~LlVlDdv~~~-~~~~~~~l~~~l~~~~~gs~IliTTR~~~v~~~~ 256 (807)
+...-.+.+.+..++-+++||++... |......+...+.....+..||++|++......+
T Consensus 151 ~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivtH~~~~~~~~ 211 (250)
T PRK14245 151 QQQRLCIARAMAVSPSVLLMDEPASALDPISTAKVEELIHELKKDYTIVIVTHNMQQAARV 211 (250)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHhh
Confidence 33344566777788889999999765 5555555666665444466799999998765443
No 369
>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.12 E-value=0.0034 Score=65.41 Aligned_cols=59 Identities=15% Similarity=0.103 Sum_probs=40.3
Q ss_pred HHHHHHHHHHHhCCceEEEEeCCCCC-CccChHHHHHhhcCC-CCCcEEEEEcCCHHHHHH
Q 047321 197 ESLMKQIQEYITGKKIFLVLDDVWDG-DYKKWDPFFSCLKNG-HHESKILITTHDRSVALQ 255 (807)
Q Consensus 197 ~~~~~~l~~~l~~k~~LlVlDdv~~~-~~~~~~~l~~~l~~~-~~gs~IliTTR~~~v~~~ 255 (807)
....-.+.+.+..++-+++||++... |......+...+... ..|..||++|++.+.+..
T Consensus 141 ~~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~~tH~~~~~~~ 201 (274)
T PRK13644 141 QGQCVALAGILTMEPECLIFDEVTSMLDPDSGIAVLERIKKLHEKGKTIVYITHNLEELHD 201 (274)
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHhh
Confidence 33344567778889999999999765 444444555555432 347789999999887643
No 370
>PRK08118 topology modulation protein; Reviewed
Probab=97.12 E-value=0.00021 Score=68.19 Aligned_cols=34 Identities=32% Similarity=0.614 Sum_probs=26.9
Q ss_pred EEEEEccCCChHHHHHHHHHcCcccc-cccceEEE
Q 047321 133 VISLVGLGGIGKTTLAQLAYNNDEVK-RNFEKVIW 166 (807)
Q Consensus 133 vi~I~G~gGiGKTtLa~~v~~~~~~~-~~f~~~~w 166 (807)
.|.|+|++|+||||||+.+++..... -+||..+|
T Consensus 3 rI~I~G~~GsGKSTlak~L~~~l~~~~~~lD~l~~ 37 (167)
T PRK08118 3 KIILIGSGGSGKSTLARQLGEKLNIPVHHLDALFW 37 (167)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCceecchhhc
Confidence 58999999999999999999854433 45666665
No 371
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=97.12 E-value=0.0083 Score=61.96 Aligned_cols=111 Identities=18% Similarity=0.234 Sum_probs=57.1
Q ss_pred eEEEEEccCCChHHHHHHHHHcCcccccccceEEEEEeCCCCCHHHHHHHH------------HHHcCCCCCCCccHHHH
Q 047321 132 DVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSNTFEEISVAKAI------------IEGLGVSAFGLSEFESL 199 (807)
Q Consensus 132 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i------------~~~l~~~~~~~~~~~~~ 199 (807)
.-+.|.|++|+|||++|+.++. ..... .+.+++....+..+++... ........ +.....-.
T Consensus 22 ~~vLL~G~~GtGKT~lA~~la~--~lg~~---~~~i~~~~~~~~~dllg~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 95 (262)
T TIGR02640 22 YPVHLRGPAGTGKTTLAMHVAR--KRDRP---VMLINGDAELTTSDLVGSYAGYTRKKVHDQFIHNVVKLE-DIVRQNWV 95 (262)
T ss_pred CeEEEEcCCCCCHHHHHHHHHH--HhCCC---EEEEeCCccCCHHHHhhhhcccchhhHHHHHHHHhhhhh-cccceeec
Confidence 3566899999999999999986 22222 3445555554444332211 00000000 00000000
Q ss_pred HHHHHHHHhCCceEEEEeCCCCCCccChHHHHHhhcCC----------------CCCcEEEEEcCC
Q 047321 200 MKQIQEYITGKKIFLVLDDVWDGDYKKWDPFFSCLKNG----------------HHESKILITTHD 249 (807)
Q Consensus 200 ~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~----------------~~gs~IliTTR~ 249 (807)
...+....+ +...+++|++...+.+.+..+...+..+ .++.+||+|+-.
T Consensus 96 ~g~l~~A~~-~g~~lllDEi~r~~~~~q~~Ll~~Le~~~~~i~~~~~~~~~i~~~~~frvIaTsN~ 160 (262)
T TIGR02640 96 DNRLTLAVR-EGFTLVYDEFTRSKPETNNVLLSVFEEGVLELPGKRGTSRYVDVHPEFRVIFTSNP 160 (262)
T ss_pred CchHHHHHH-cCCEEEEcchhhCCHHHHHHHHHHhcCCeEEccCCCCCCceEecCCCCEEEEeeCC
Confidence 011222222 3468999999776666666666666432 134577887764
No 372
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=97.12 E-value=0.0055 Score=66.87 Aligned_cols=63 Identities=16% Similarity=0.184 Sum_probs=42.5
Q ss_pred HHHHHHHHHHHHhCCceEEEEeCCCCC-CccChHHHHHhhcCC--CCCcEEEEEcCCHHHHHHhCC
Q 047321 196 FESLMKQIQEYITGKKIFLVLDDVWDG-DYKKWDPFFSCLKNG--HHESKILITTHDRSVALQLGS 258 (807)
Q Consensus 196 ~~~~~~~l~~~l~~k~~LlVlDdv~~~-~~~~~~~l~~~l~~~--~~gs~IliTTR~~~v~~~~~~ 258 (807)
.+...-.+.+.+..++-+++||++... |......+...+... ..|..||++|++.+.+..+..
T Consensus 168 Gq~QRv~LArAL~~~P~iLLLDEPts~LD~~~r~~l~~~L~~l~~~~g~TIIivTHd~~~~~~~~D 233 (400)
T PRK10070 168 GMRQRVGLARALAINPDILLMDEAFSALDPLIRTEMQDELVKLQAKHQRTIVFISHDLDEAMRIGD 233 (400)
T ss_pred HHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHHCCCeEEEEECCHHHHHHhCC
Confidence 344445577788889999999999765 444444555555432 246679999999887665443
No 373
>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.12 E-value=0.0012 Score=68.84 Aligned_cols=57 Identities=18% Similarity=0.148 Sum_probs=40.5
Q ss_pred HHHHHHHHHhCCceEEEEeCCCCC-CccChHHHHHhhcCCC--CCcEEEEEcCCHHHHHH
Q 047321 199 LMKQIQEYITGKKIFLVLDDVWDG-DYKKWDPFFSCLKNGH--HESKILITTHDRSVALQ 255 (807)
Q Consensus 199 ~~~~l~~~l~~k~~LlVlDdv~~~-~~~~~~~l~~~l~~~~--~gs~IliTTR~~~v~~~ 255 (807)
..-.+.+.+..++-+|+||++... |......+...+.... .|..||++|++.+....
T Consensus 147 qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~~~~tilivsH~~~~~~~ 206 (279)
T PRK13635 147 QRVAIAGVLALQPDIIILDEATSMLDPRGRREVLETVRQLKEQKGITVLSITHDLDEAAQ 206 (279)
T ss_pred HHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHc
Confidence 344467777888999999999765 5555556666665432 37789999999876653
No 374
>PRK14239 phosphate transporter ATP-binding protein; Provisional
Probab=97.12 E-value=0.0053 Score=63.21 Aligned_cols=56 Identities=14% Similarity=0.083 Sum_probs=37.5
Q ss_pred HHHHHHHHhCCceEEEEeCCCCC-CccChHHHHHhhcCCCCCcEEEEEcCCHHHHHH
Q 047321 200 MKQIQEYITGKKIFLVLDDVWDG-DYKKWDPFFSCLKNGHHESKILITTHDRSVALQ 255 (807)
Q Consensus 200 ~~~l~~~l~~k~~LlVlDdv~~~-~~~~~~~l~~~l~~~~~gs~IliTTR~~~v~~~ 255 (807)
.-.+.+.+..++-+++||++... |......+...+.....+..||++|++.+....
T Consensus 156 rv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~ 212 (252)
T PRK14239 156 RVCIARVLATSPKIILLDEPTSALDPISAGKIEETLLGLKDDYTMLLVTRSMQQASR 212 (252)
T ss_pred HHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHHHHhhCCeEEEEECCHHHHHH
Confidence 33456667778889999999765 444555565655543335679999998765444
No 375
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=97.11 E-value=0.003 Score=70.46 Aligned_cols=167 Identities=11% Similarity=0.070 Sum_probs=86.5
Q ss_pred CccccccchHHHHHHHHhCCCCC-------CCCCceEEEEEccCCChHHHHHHHHHcCccccc---ccceEEEEEeCCCC
Q 047321 104 GGVCGRVDEKNELLSKLLCGSSE-------QQKGLDVISLVGLGGIGKTTLAQLAYNNDEVKR---NFEKVIWVCVSNTF 173 (807)
Q Consensus 104 ~~~vGR~~~~~~l~~~L~~~~~~-------~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~---~f~~~~wv~~~~~~ 173 (807)
.++.|.+..++++.+.+..+-.. +-...+-+.++|++|+|||++|+.+++...... ......|+.+....
T Consensus 182 ~dIgGl~~~i~~i~~~v~lp~~~~~l~~~~gl~~p~GILLyGPPGTGKT~LAKAlA~eL~~~i~~~~~~~~~fl~v~~~e 261 (512)
T TIGR03689 182 ADIGGLDSQIEQIRDAVELPFLHPELYREYDLKPPKGVLLYGPPGCGKTLIAKAVANSLAQRIGAETGDKSYFLNIKGPE 261 (512)
T ss_pred HHcCChHHHHHHHHHHHHHHhhCHHHHHhccCCCCcceEEECCCCCcHHHHHHHHHHhhccccccccCCceeEEeccchh
Confidence 45788999999988876421100 012345689999999999999999998422110 01123344433210
Q ss_pred CHHHHHHHHHHHcCCCCCCCccHHHHHHHHHHH-HhCCceEEEEeCCCCCC-------ccCh-----HHHHHhhcCC--C
Q 047321 174 EEISVAKAIIEGLGVSAFGLSEFESLMKQIQEY-ITGKKIFLVLDDVWDGD-------YKKW-----DPFFSCLKNG--H 238 (807)
Q Consensus 174 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~-l~~k~~LlVlDdv~~~~-------~~~~-----~~l~~~l~~~--~ 238 (807)
+ +....+. .......+....++. ..+++.+|+||+++.-- .... ..+...+... .
T Consensus 262 ----L----l~kyvGe--te~~ir~iF~~Ar~~a~~g~p~IIfIDEiD~L~~~R~~~~s~d~e~~il~~LL~~LDgl~~~ 331 (512)
T TIGR03689 262 ----L----LNKYVGE--TERQIRLIFQRAREKASDGRPVIVFFDEMDSIFRTRGSGVSSDVETTVVPQLLSELDGVESL 331 (512)
T ss_pred ----h----cccccch--HHHHHHHHHHHHHHHhhcCCCceEEEehhhhhhcccCCCccchHHHHHHHHHHHHhcccccC
Confidence 1 0000000 000111112222221 23579999999995310 1111 1232323221 1
Q ss_pred CCcEEEEEcCCHHHHH-Hh-C---CCceEeCCCCChhhHHHHHHHHH
Q 047321 239 HESKILITTHDRSVAL-QL-G---SIDIIPVKELGEGECWLLFKQIA 280 (807)
Q Consensus 239 ~gs~IliTTR~~~v~~-~~-~---~~~~~~l~~L~~~~~~~Lf~~~a 280 (807)
.+..||.||-..+... .+ . -...++++..+.++..++|.++.
T Consensus 332 ~~ViVI~ATN~~d~LDpALlRpGRfD~~I~~~~Pd~e~r~~Il~~~l 378 (512)
T TIGR03689 332 DNVIVIGASNREDMIDPAILRPGRLDVKIRIERPDAEAAADIFSKYL 378 (512)
T ss_pred CceEEEeccCChhhCCHhhcCccccceEEEeCCCCHHHHHHHHHHHh
Confidence 3444555554433211 11 1 13468999999999999998876
No 376
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=97.11 E-value=0.0024 Score=77.23 Aligned_cols=124 Identities=18% Similarity=0.265 Sum_probs=71.7
Q ss_pred CccccccchHHHHHHHHhCCCCC---CCCCceEEEEEccCCChHHHHHHHHHcCcccccccceEEEEEeCCCCCHHHHHH
Q 047321 104 GGVCGRVDEKNELLSKLLCGSSE---QQKGLDVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSNTFEEISVAK 180 (807)
Q Consensus 104 ~~~vGR~~~~~~l~~~L~~~~~~---~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~ 180 (807)
..++|.+..++.+...+.....+ .+....++.++|+.|+|||++|+.+... ....-...+.++++...+...+
T Consensus 565 ~~v~GQ~~av~~v~~~i~~~~~gl~~~~~p~~~~Lf~Gp~GvGKt~lA~~La~~--l~~~~~~~i~~d~s~~~~~~~~-- 640 (852)
T TIGR03346 565 ERVVGQDEAVEAVSDAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELAKALAEF--LFDDEDAMVRIDMSEYMEKHSV-- 640 (852)
T ss_pred cccCCChHHHHHHHHHHHHHhccCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHH--hcCCCCcEEEEechhhcccchH--
Confidence 45899999999999888653210 0223467889999999999999999862 2111122334444432221111
Q ss_pred HHHHHcCCC--CCCCccHHHHHHHHHHHHhCC-ceEEEEeCCCCCCccChHHHHHhhcCC
Q 047321 181 AIIEGLGVS--AFGLSEFESLMKQIQEYITGK-KIFLVLDDVWDGDYKKWDPFFSCLKNG 237 (807)
Q Consensus 181 ~i~~~l~~~--~~~~~~~~~~~~~l~~~l~~k-~~LlVlDdv~~~~~~~~~~l~~~l~~~ 237 (807)
...++.. ..+..+... +...++.+ ..+|+||++...+...+..+...+..+
T Consensus 641 --~~l~g~~~g~~g~~~~g~----l~~~v~~~p~~vlllDeieka~~~v~~~Ll~~l~~g 694 (852)
T TIGR03346 641 --ARLIGAPPGYVGYEEGGQ----LTEAVRRKPYSVVLFDEVEKAHPDVFNVLLQVLDDG 694 (852)
T ss_pred --HHhcCCCCCccCcccccH----HHHHHHcCCCcEEEEeccccCCHHHHHHHHHHHhcC
Confidence 1112211 111112122 33333333 349999999877788888888887654
No 377
>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional
Probab=97.10 E-value=0.004 Score=64.65 Aligned_cols=61 Identities=5% Similarity=0.076 Sum_probs=40.9
Q ss_pred HHHHHHHHHHHhCCceEEEEeCCCCC-CccChHHHHHhhcCC--CCCcEEEEEcCCHHHHHHhC
Q 047321 197 ESLMKQIQEYITGKKIFLVLDDVWDG-DYKKWDPFFSCLKNG--HHESKILITTHDRSVALQLG 257 (807)
Q Consensus 197 ~~~~~~l~~~l~~k~~LlVlDdv~~~-~~~~~~~l~~~l~~~--~~gs~IliTTR~~~v~~~~~ 257 (807)
+...-.+.+.+..++-+++||++... |......+...+... ..|..||++|++.+....+.
T Consensus 154 ~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tviivsH~~~~~~~~~ 217 (267)
T PRK15112 154 QKQRLGLARALILRPKVIIADEALASLDMSMRSQLINLMLELQEKQGISYIYVTQHLGMMKHIS 217 (267)
T ss_pred HHHHHHHHHHHHhCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCHHHHHHhc
Confidence 33344567777888999999999765 444444555555543 23667999999987765543
No 378
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=97.10 E-value=0.006 Score=71.52 Aligned_cols=127 Identities=17% Similarity=0.209 Sum_probs=74.0
Q ss_pred CceEEEEEccCCChHHHHHHHHHcCccc-cc--ccc---eEEEEEeCC--CCC----HH------------HHHHHHHHH
Q 047321 130 GLDVISLVGLGGIGKTTLAQLAYNNDEV-KR--NFE---KVIWVCVSN--TFE----EI------------SVAKAIIEG 185 (807)
Q Consensus 130 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~-~~--~f~---~~~wv~~~~--~~~----~~------------~~~~~i~~~ 185 (807)
.-.+++|+|++|+|||||++.+...... .+ .+. .+.++.-.. ..+ +. .....++..
T Consensus 337 ~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~igy~~Q~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~ 416 (638)
T PRK10636 337 PGSRIGLLGRNGAGKSTLIKLLAGELAPVSGEIGLAKGIKLGYFAQHQLEFLRADESPLQHLARLAPQELEQKLRDYLGG 416 (638)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCCEEEEEecCcchhhCCccchHHHHHHHhCchhhHHHHHHHHHH
Confidence 4579999999999999999999864221 11 111 112222110 011 11 112233444
Q ss_pred cCCCC-------CCCccHHHHHHHHHHHHhCCceEEEEeCCCCC-CccChHHHHHhhcCCCCCcEEEEEcCCHHHHHHhC
Q 047321 186 LGVSA-------FGLSEFESLMKQIQEYITGKKIFLVLDDVWDG-DYKKWDPFFSCLKNGHHESKILITTHDRSVALQLG 257 (807)
Q Consensus 186 l~~~~-------~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~-~~~~~~~l~~~l~~~~~gs~IliTTR~~~v~~~~~ 257 (807)
++... ......+...-.+.+.+..++-+|+||++.+. |...-+.+...+... .| .||++|++......+.
T Consensus 417 ~~l~~~~~~~~~~~LSgGekqRl~La~~l~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~-~g-tvi~vSHd~~~~~~~~ 494 (638)
T PRK10636 417 FGFQGDKVTEETRRFSGGEKARLVLALIVWQRPNLLLLDEPTNHLDLDMRQALTEALIDF-EG-ALVVVSHDRHLLRSTT 494 (638)
T ss_pred cCCChhHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHc-CC-eEEEEeCCHHHHHHhC
Confidence 43321 11122333444567777888999999999775 555555566666655 35 5999999998876654
Q ss_pred C
Q 047321 258 S 258 (807)
Q Consensus 258 ~ 258 (807)
+
T Consensus 495 d 495 (638)
T PRK10636 495 D 495 (638)
T ss_pred C
Confidence 3
No 379
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=97.10 E-value=0.0011 Score=78.55 Aligned_cols=166 Identities=17% Similarity=0.230 Sum_probs=88.1
Q ss_pred CCccccccchHHHHHHHHhCCCCCCCCCceEEEEEccCCChHHHHHHHHHcCcccccccceEEEEEeCCCCCHHHHHHHH
Q 047321 103 EGGVCGRVDEKNELLSKLLCGSSEQQKGLDVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSNTFEEISVAKAI 182 (807)
Q Consensus 103 ~~~~vGR~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i 182 (807)
+.+.+|.++.+++|+++|............++.++|++|+||||+|+.++.. ....| +-+..+...+...+...-
T Consensus 321 ~~~~~g~~~vK~~i~~~l~~~~~~~~~~g~~i~l~GppG~GKTtl~~~ia~~--l~~~~---~~i~~~~~~d~~~i~g~~ 395 (784)
T PRK10787 321 DTDHYGLERVKDRILEYLAVQSRVNKIKGPILCLVGPPGVGKTSLGQSIAKA--TGRKY---VRMALGGVRDEAEIRGHR 395 (784)
T ss_pred hhhccCHHHHHHHHHHHHHHHHhcccCCCceEEEECCCCCCHHHHHHHHHHH--hCCCE---EEEEcCCCCCHHHhccch
Confidence 3468999999999998886422111234568999999999999999999862 33233 123333333332221110
Q ss_pred HHHcCCCCCCCccHHHHHHHHHHHHhCCceEEEEeCCCCCCccC----hHHHHHhhcCC--------------C-CCcEE
Q 047321 183 IEGLGVSAFGLSEFESLMKQIQEYITGKKIFLVLDDVWDGDYKK----WDPFFSCLKNG--------------H-HESKI 243 (807)
Q Consensus 183 ~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~----~~~l~~~l~~~--------------~-~gs~I 243 (807)
+.. .+.. ...+...+... ....-+++||++..-.... ...+...+... . ....+
T Consensus 396 -~~~----~g~~-~G~~~~~l~~~-~~~~~villDEidk~~~~~~g~~~~aLlevld~~~~~~~~d~~~~~~~dls~v~~ 468 (784)
T PRK10787 396 -RTY----IGSM-PGKLIQKMAKV-GVKNPLFLLDEIDKMSSDMRGDPASALLEVLDPEQNVAFSDHYLEVDYDLSDVMF 468 (784)
T ss_pred -hcc----CCCC-CcHHHHHHHhc-CCCCCEEEEEChhhcccccCCCHHHHHHHHhccccEEEEecccccccccCCceEE
Confidence 000 1111 11222233222 2234578999995543221 23444444321 0 22333
Q ss_pred EEEcCCHHHHHH-hCCCceEeCCCCChhhHHHHHHHHH
Q 047321 244 LITTHDRSVALQ-LGSIDIIPVKELGEGECWLLFKQIA 280 (807)
Q Consensus 244 liTTR~~~v~~~-~~~~~~~~l~~L~~~~~~~Lf~~~a 280 (807)
|.|+....+... .+-..++++.+++.++-.++.+++.
T Consensus 469 i~TaN~~~i~~aLl~R~~ii~~~~~t~eek~~Ia~~~L 506 (784)
T PRK10787 469 VATSNSMNIPAPLLDRMEVIRLSGYTEDEKLNIAKRHL 506 (784)
T ss_pred EEcCCCCCCCHHHhcceeeeecCCCCHHHHHHHHHHhh
Confidence 444433222111 1223578889999888888777655
No 380
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional
Probab=97.10 E-value=0.0048 Score=63.74 Aligned_cols=61 Identities=21% Similarity=0.187 Sum_probs=41.3
Q ss_pred HHHHHHHHHHHHhCCceEEEEeCCCCC-CccChHHHHHhhcCC--CCCcEEEEEcCCHHHHHHh
Q 047321 196 FESLMKQIQEYITGKKIFLVLDDVWDG-DYKKWDPFFSCLKNG--HHESKILITTHDRSVALQL 256 (807)
Q Consensus 196 ~~~~~~~l~~~l~~k~~LlVlDdv~~~-~~~~~~~l~~~l~~~--~~gs~IliTTR~~~v~~~~ 256 (807)
.+...-.+.+.+..++-++++|++... |......+...+... ..|..||++|++...+...
T Consensus 155 Gq~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~isH~~~~~~~~ 218 (258)
T PRK11701 155 GMQQRLQIARNLVTHPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLAVARLL 218 (258)
T ss_pred HHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHh
Confidence 333444577778889999999999765 444444555555432 2367899999998877654
No 381
>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.10 E-value=0.0061 Score=62.74 Aligned_cols=58 Identities=17% Similarity=0.102 Sum_probs=37.3
Q ss_pred HHHHHHHHHhCCceEEEEeCCCCC-CccChHHHHHhhcCCCCCcEEEEEcCCHHHHHHh
Q 047321 199 LMKQIQEYITGKKIFLVLDDVWDG-DYKKWDPFFSCLKNGHHESKILITTHDRSVALQL 256 (807)
Q Consensus 199 ~~~~l~~~l~~k~~LlVlDdv~~~-~~~~~~~l~~~l~~~~~gs~IliTTR~~~v~~~~ 256 (807)
..-.+.+.+-.++-++++|++.+. |...-..+...+.....+..||++|++......+
T Consensus 155 qrl~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~tiiivsH~~~~~~~~ 213 (252)
T PRK14256 155 QRLCIARTIAVKPEVILMDEPASALDPISTLKIEELIEELKEKYTIIIVTHNMQQAARV 213 (252)
T ss_pred HHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCcEEEEECCHHHHHhh
Confidence 344466777788889999999664 3333444545444333345689999988765443
No 382
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein. This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.
Probab=97.09 E-value=0.0042 Score=63.70 Aligned_cols=59 Identities=17% Similarity=0.120 Sum_probs=39.5
Q ss_pred HHHHHHHHHhCCceEEEEeCCCCC-CccChHHHHHhhcCCCCCcEEEEEcCCHHHHHHhC
Q 047321 199 LMKQIQEYITGKKIFLVLDDVWDG-DYKKWDPFFSCLKNGHHESKILITTHDRSVALQLG 257 (807)
Q Consensus 199 ~~~~l~~~l~~k~~LlVlDdv~~~-~~~~~~~l~~~l~~~~~gs~IliTTR~~~v~~~~~ 257 (807)
..-.+.+.+..++-++++|++... |......+...+.....+..||++|++.+....+.
T Consensus 151 qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivsH~~~~~~~~~ 210 (247)
T TIGR00972 151 QRLCIARALAVEPEVLLLDEPTSALDPIATGKIEELIQELKKKYTIVIVTHNMQQAARIS 210 (247)
T ss_pred HHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCeEEEEecCHHHHHHhC
Confidence 344467777788889999999764 44445555555554333467999999988665443
No 383
>PRK14275 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.09 E-value=0.0071 Score=63.42 Aligned_cols=61 Identities=16% Similarity=0.135 Sum_probs=41.0
Q ss_pred HHHHHHHHHHHhCCceEEEEeCCCCC-CccChHHHHHhhcCCCCCcEEEEEcCCHHHHHHhC
Q 047321 197 ESLMKQIQEYITGKKIFLVLDDVWDG-DYKKWDPFFSCLKNGHHESKILITTHDRSVALQLG 257 (807)
Q Consensus 197 ~~~~~~l~~~l~~k~~LlVlDdv~~~-~~~~~~~l~~~l~~~~~gs~IliTTR~~~v~~~~~ 257 (807)
+...-.+.+.+..++-+++||++... |....+.+...+.....+..||++|++.+....+.
T Consensus 187 q~qrv~LAraL~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~~~tvIivsH~~~~~~~~~ 248 (286)
T PRK14275 187 QQQRLCVARTLAVEPEILLLDEPTSALDPKATAKIEDLIQELRGSYTIMIVTHNMQQASRVS 248 (286)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhC
Confidence 33344567777788899999999765 44445556566554333567999999987765543
No 384
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=97.09 E-value=0.0045 Score=63.76 Aligned_cols=59 Identities=15% Similarity=0.100 Sum_probs=40.2
Q ss_pred HHHHHHHHHhCCceEEEEeCCCCC-CccChHHHHHhhcCCCCCcEEEEEcCCHHHHHHhC
Q 047321 199 LMKQIQEYITGKKIFLVLDDVWDG-DYKKWDPFFSCLKNGHHESKILITTHDRSVALQLG 257 (807)
Q Consensus 199 ~~~~l~~~l~~k~~LlVlDdv~~~-~~~~~~~l~~~l~~~~~gs~IliTTR~~~v~~~~~ 257 (807)
..-.+.+.+..++-+++||++... |......+...+.....|..||++|++.+....+.
T Consensus 156 qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tvii~tH~~~~~~~~~ 215 (253)
T PRK14242 156 QRLCIARALAVEPEVLLMDEPASALDPIATQKIEELIHELKARYTIIIVTHNMQQAARVS 215 (253)
T ss_pred HHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCeEEEEEecHHHHHHhC
Confidence 344466777788899999999665 44455556666554434567999999987665433
No 385
>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.09 E-value=0.0047 Score=63.46 Aligned_cols=59 Identities=15% Similarity=0.091 Sum_probs=40.0
Q ss_pred HHHHHHHHHhCCceEEEEeCCCCC-CccChHHHHHhhcCCCCCcEEEEEcCCHHHHHHhC
Q 047321 199 LMKQIQEYITGKKIFLVLDDVWDG-DYKKWDPFFSCLKNGHHESKILITTHDRSVALQLG 257 (807)
Q Consensus 199 ~~~~l~~~l~~k~~LlVlDdv~~~-~~~~~~~l~~~l~~~~~gs~IliTTR~~~v~~~~~ 257 (807)
..-.+.+.+..++-++++|++... |......+...+.....+..||++|++.+....+.
T Consensus 152 qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~~ 211 (249)
T PRK14253 152 QRLCIARTIAMEPDVILMDEPTSALDPIATHKIEELMEELKKNYTIVIVTHSMQQARRIS 211 (249)
T ss_pred HHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHHhC
Confidence 344467777788899999999664 44445555555554433567999999987655543
No 386
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=97.09 E-value=0.0053 Score=61.14 Aligned_cols=121 Identities=12% Similarity=0.165 Sum_probs=59.1
Q ss_pred ceEEEEEccCCChHHHHHHHHHcCcccccccceEEEEEeCCCCCHHHHHHHHHHHcCCCC---CCCccHHHHHHHHHHH-
Q 047321 131 LDVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSNTFEEISVAKAIIEGLGVSA---FGLSEFESLMKQIQEY- 206 (807)
Q Consensus 131 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~---~~~~~~~~~~~~l~~~- 206 (807)
.+++.|+|++|.||||+.+.+...... .+-...+|. .. .. ...+.++...+.... ........-..++...
T Consensus 29 ~~~~~itGpNg~GKStlLk~i~~~~~l-a~~G~~v~a--~~-~~-~~~~d~i~~~l~~~~si~~~~S~f~~el~~l~~~l 103 (213)
T cd03281 29 PSIMVITGPNSSGKSVYLKQVALIVFL-AHIGSFVPA--DS-AT-IGLVDKIFTRMSSRESVSSGQSAFMIDLYQVSKAL 103 (213)
T ss_pred ceEEEEECCCCCChHHHHHHHHHHHHH-HhCCCeeEc--CC-cE-EeeeeeeeeeeCCccChhhccchHHHHHHHHHHHH
Confidence 488999999999999999988632111 000011110 00 00 001111111111110 0111122222233322
Q ss_pred -HhCCceEEEEeCCCCC-CccChHH----HHHhhcCC-CCCcEEEEEcCCHHHHHHh
Q 047321 207 -ITGKKIFLVLDDVWDG-DYKKWDP----FFSCLKNG-HHESKILITTHDRSVALQL 256 (807)
Q Consensus 207 -l~~k~~LlVlDdv~~~-~~~~~~~----l~~~l~~~-~~gs~IliTTR~~~v~~~~ 256 (807)
+..++-|+++|++... +...... +...+... ..+..+|+||++.+++...
T Consensus 104 ~~~~~~slvllDE~~~gtd~~~~~~~~~ail~~l~~~~~~~~~vli~TH~~~l~~~~ 160 (213)
T cd03281 104 RLATRRSLVLIDEFGKGTDTEDGAGLLIATIEHLLKRGPECPRVIVSTHFHELFNRS 160 (213)
T ss_pred HhCCCCcEEEeccccCCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEcChHHHHHhh
Confidence 3468899999999664 2222111 22333222 2345799999999887665
No 387
>PRK14237 phosphate transporter ATP-binding protein; Provisional
Probab=97.09 E-value=0.005 Score=63.94 Aligned_cols=57 Identities=19% Similarity=0.093 Sum_probs=38.5
Q ss_pred HHHHHHHHhCCceEEEEeCCCCC-CccChHHHHHhhcCCCCCcEEEEEcCCHHHHHHh
Q 047321 200 MKQIQEYITGKKIFLVLDDVWDG-DYKKWDPFFSCLKNGHHESKILITTHDRSVALQL 256 (807)
Q Consensus 200 ~~~l~~~l~~k~~LlVlDdv~~~-~~~~~~~l~~~l~~~~~gs~IliTTR~~~v~~~~ 256 (807)
.-.+.+.+..++-+++||++... |......+...+.....+..||++|++.......
T Consensus 171 rl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~~~~~ 228 (267)
T PRK14237 171 RLCIARAIAVKPDILLMDEPASALDPISTMQLEETMFELKKNYTIIIVTHNMQQAARA 228 (267)
T ss_pred HHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHh
Confidence 34466777778889999999765 4444455555555433456799999988765443
No 388
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=97.08 E-value=0.003 Score=72.76 Aligned_cols=49 Identities=14% Similarity=0.180 Sum_probs=34.5
Q ss_pred HHHHHHHhCCceEEEEeCCCCC-CccChHHHHHhhcCCCCCcEEEEEcCC
Q 047321 201 KQIQEYITGKKIFLVLDDVWDG-DYKKWDPFFSCLKNGHHESKILITTHD 249 (807)
Q Consensus 201 ~~l~~~l~~k~~LlVlDdv~~~-~~~~~~~l~~~l~~~~~gs~IliTTR~ 249 (807)
-.+.+.+-.++-++|||++.+. |.+.-..+...+....++..+|++||.
T Consensus 479 iaiARall~~~~iliLDE~TSaLD~~te~~I~~~l~~~~~~~TvIiItHr 528 (529)
T TIGR02868 479 LALARALLADAPILLLDEPTEHLDAGTESELLEDLLAALSGKTVVVITHH 528 (529)
T ss_pred HHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEecC
Confidence 3467777778889999999765 444445566666665566677777764
No 389
>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.08 E-value=0.0035 Score=65.26 Aligned_cols=57 Identities=14% Similarity=0.115 Sum_probs=38.1
Q ss_pred HHHHHHHHHHhCCceEEEEeCCCCC-CccChHHHHHhhcCC-C-CCcEEEEEcCCHHHHH
Q 047321 198 SLMKQIQEYITGKKIFLVLDDVWDG-DYKKWDPFFSCLKNG-H-HESKILITTHDRSVAL 254 (807)
Q Consensus 198 ~~~~~l~~~l~~k~~LlVlDdv~~~-~~~~~~~l~~~l~~~-~-~gs~IliTTR~~~v~~ 254 (807)
...-.+.+.+..++-+++||++... |...-..+...+... . .+..||++|++.+...
T Consensus 148 ~qrl~laral~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~ 207 (271)
T PRK13632 148 KQRVAIASVLALNPEIIIFDESTSMLDPKGKREIKKIMVDLRKTRKKTLISITHDMDEAI 207 (271)
T ss_pred HHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEEechhHHh
Confidence 3344467777888999999999765 444444555555543 2 2467899998876654
No 390
>PRK07952 DNA replication protein DnaC; Validated
Probab=97.08 E-value=0.0031 Score=63.72 Aligned_cols=103 Identities=15% Similarity=0.163 Sum_probs=57.3
Q ss_pred ceEEEEEccCCChHHHHHHHHHcCcccccccceEEEEEeCCCCCHHHHHHHHHHHcCCCCCCCccHHHHHHHHHHHHhCC
Q 047321 131 LDVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSNTFEEISVAKAIIEGLGVSAFGLSEFESLMKQIQEYITGK 210 (807)
Q Consensus 131 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k 210 (807)
...+.++|.+|+|||+||..+++.. ...-..+++++ ..+++..+-..... .....+ .+.+.+. +
T Consensus 99 ~~~~~l~G~~GtGKThLa~aia~~l--~~~g~~v~~it------~~~l~~~l~~~~~~---~~~~~~----~~l~~l~-~ 162 (244)
T PRK07952 99 IASFIFSGKPGTGKNHLAAAICNEL--LLRGKSVLIIT------VADIMSAMKDTFSN---SETSEE----QLLNDLS-N 162 (244)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHH--HhcCCeEEEEE------HHHHHHHHHHHHhh---ccccHH----HHHHHhc-c
Confidence 4578999999999999999998842 22223445553 34444444333311 111112 2223344 4
Q ss_pred ceEEEEeCCCCCCccChHH--HHHhhcCC-CCCcEEEEEcCC
Q 047321 211 KIFLVLDDVWDGDYKKWDP--FFSCLKNG-HHESKILITTHD 249 (807)
Q Consensus 211 ~~LlVlDdv~~~~~~~~~~--l~~~l~~~-~~gs~IliTTR~ 249 (807)
.-+||+||+.......|+. +...+... ...-.+||||-.
T Consensus 163 ~dlLvIDDig~~~~s~~~~~~l~~Ii~~Ry~~~~~tiitSNl 204 (244)
T PRK07952 163 VDLLVIDEIGVQTESRYEKVIINQIVDRRSSSKRPTGMLTNS 204 (244)
T ss_pred CCEEEEeCCCCCCCCHHHHHHHHHHHHHHHhCCCCEEEeCCC
Confidence 5688999997665556664 33333322 222346777653
No 391
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=97.08 E-value=0.0046 Score=64.14 Aligned_cols=62 Identities=15% Similarity=0.099 Sum_probs=41.2
Q ss_pred HHHHHHHHHHHHhCCceEEEEeCCCCC-CccChHHHHHhhcCC--CCCcEEEEEcCCHHHHHHhC
Q 047321 196 FESLMKQIQEYITGKKIFLVLDDVWDG-DYKKWDPFFSCLKNG--HHESKILITTHDRSVALQLG 257 (807)
Q Consensus 196 ~~~~~~~l~~~l~~k~~LlVlDdv~~~-~~~~~~~l~~~l~~~--~~gs~IliTTR~~~v~~~~~ 257 (807)
.+...-.+.+.+..++-+++||++... |......+...+... ..|..||++|++........
T Consensus 151 G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~~~~tiii~sH~~~~i~~~~ 215 (265)
T PRK10575 151 GERQRAWIAMLVAQDSRCLLLDEPTSALDIAHQVDVLALVHRLSQERGLTVIAVLHDINMAARYC 215 (265)
T ss_pred HHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhC
Confidence 333444567778889999999999665 444444455555433 23677999999987665433
No 392
>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.08 E-value=0.0059 Score=63.67 Aligned_cols=59 Identities=22% Similarity=0.195 Sum_probs=40.4
Q ss_pred HHHHHHHHHHhCCceEEEEeCCCCC-CccChHHHHHhhcCC-CCCcEEEEEcCCHHHHHHh
Q 047321 198 SLMKQIQEYITGKKIFLVLDDVWDG-DYKKWDPFFSCLKNG-HHESKILITTHDRSVALQL 256 (807)
Q Consensus 198 ~~~~~l~~~l~~k~~LlVlDdv~~~-~~~~~~~l~~~l~~~-~~gs~IliTTR~~~v~~~~ 256 (807)
...-.+.+.+..++-++++|++... |......+...+... ..|..||++|++.+.+...
T Consensus 143 ~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~~til~vtH~~~~~~~~ 203 (275)
T PRK13639 143 KKRVAIAGILAMKPEIIVLDEPTSGLDPMGASQIMKLLYDLNKEGITIIISTHDVDLVPVY 203 (275)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHh
Confidence 3344567777888899999999765 455555565655543 2367799999998766543
No 393
>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional
Probab=97.07 E-value=0.0057 Score=63.51 Aligned_cols=62 Identities=16% Similarity=0.113 Sum_probs=41.9
Q ss_pred HHHHHHHHHHHHhCCceEEEEeCCCCC-CccChHHHHHhhcCCC--CCcEEEEEcCCHHHHHHhC
Q 047321 196 FESLMKQIQEYITGKKIFLVLDDVWDG-DYKKWDPFFSCLKNGH--HESKILITTHDRSVALQLG 257 (807)
Q Consensus 196 ~~~~~~~l~~~l~~k~~LlVlDdv~~~-~~~~~~~l~~~l~~~~--~gs~IliTTR~~~v~~~~~ 257 (807)
.+...-.+.+.+-.++-+++||+.... |....+.+...+.... .|..||++|++......+.
T Consensus 155 Ge~qrl~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiiivsH~~~~i~~~~ 219 (268)
T PRK10419 155 GQLQRVCLARALAVEPKLLILDEAVSNLDLVLQAGVIRLLKKLQQQFGTACLFITHDLRLVERFC 219 (268)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHHcCcEEEEEECCHHHHHHhC
Confidence 444455577788889999999999765 4444445555554332 3678999999987665443
No 394
>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.07 E-value=0.0064 Score=62.65 Aligned_cols=58 Identities=19% Similarity=0.120 Sum_probs=39.1
Q ss_pred HHHHHHHHhCCceEEEEeCCCCC-CccChHHHHHhhcCCCCCcEEEEEcCCHHHHHHhC
Q 047321 200 MKQIQEYITGKKIFLVLDDVWDG-DYKKWDPFFSCLKNGHHESKILITTHDRSVALQLG 257 (807)
Q Consensus 200 ~~~l~~~l~~k~~LlVlDdv~~~-~~~~~~~l~~~l~~~~~gs~IliTTR~~~v~~~~~ 257 (807)
.-.+.+.+..++-++++|++... |......+...+.....+..||++|++........
T Consensus 157 rv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~ 215 (253)
T PRK14267 157 RLVIARALAMKPKILLMDEPTANIDPVGTAKIEELLFELKKEYTIVLVTHSPAQAARVS 215 (253)
T ss_pred HHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhhCCEEEEEECCHHHHHhhC
Confidence 33466677788899999999664 44445555555554334567999999987655433
No 395
>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.07 E-value=0.0013 Score=68.88 Aligned_cols=59 Identities=22% Similarity=0.166 Sum_probs=40.5
Q ss_pred HHHHHHHHHHhCCceEEEEeCCCCC-CccChHHHHHhhcCC--CCCcEEEEEcCCHHHHHHh
Q 047321 198 SLMKQIQEYITGKKIFLVLDDVWDG-DYKKWDPFFSCLKNG--HHESKILITTHDRSVALQL 256 (807)
Q Consensus 198 ~~~~~l~~~l~~k~~LlVlDdv~~~-~~~~~~~l~~~l~~~--~~gs~IliTTR~~~v~~~~ 256 (807)
...-.+.+.+..++-+++||++... |......+...+... ..|..||++|++.+.....
T Consensus 147 ~qrl~laraL~~~p~lLilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvsH~~~~~~~~ 208 (283)
T PRK13636 147 KKRVAIAGVLVMEPKVLVLDEPTAGLDPMGVSEIMKLLVEMQKELGLTIIIATHDIDIVPLY 208 (283)
T ss_pred HHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHh
Confidence 3344467778888999999999765 555555555555433 2367899999998776543
No 396
>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional
Probab=97.07 E-value=0.0016 Score=70.76 Aligned_cols=129 Identities=16% Similarity=0.195 Sum_probs=73.0
Q ss_pred CceEEEEEccCCChHHHHHHHHHcCcccc-c--ccc------------eEEEEEeCC----CCCH---------------
Q 047321 130 GLDVISLVGLGGIGKTTLAQLAYNNDEVK-R--NFE------------KVIWVCVSN----TFEE--------------- 175 (807)
Q Consensus 130 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~-~--~f~------------~~~wv~~~~----~~~~--------------- 175 (807)
.-.+++|+|++|+|||||.+.++.-.... + .|+ .+.++.-.. ..++
T Consensus 44 ~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~vfQ~~~lfp~ltv~eNi~~~l~~~~~~~ 123 (377)
T PRK11607 44 KGEIFALLGASGCGKSTLLRMLAGFEQPTAGQIMLDGVDLSHVPPYQRPINMMFQSYALFPHMTVEQNIAFGLKQDKLPK 123 (377)
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHCCEEEEeCCCccCCCCCHHHHHHHHHHHcCCCH
Confidence 34699999999999999999997421110 0 000 122221110 0011
Q ss_pred ---HHHHHHHHHHcCCCC------CCCccHHHHHHHHHHHHhCCceEEEEeCCCCC-CccChHHHHHhhcCC--CCCcEE
Q 047321 176 ---ISVAKAIIEGLGVSA------FGLSEFESLMKQIQEYITGKKIFLVLDDVWDG-DYKKWDPFFSCLKNG--HHESKI 243 (807)
Q Consensus 176 ---~~~~~~i~~~l~~~~------~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~-~~~~~~~l~~~l~~~--~~gs~I 243 (807)
.+...++++.++... ......+...-.+.+.+..++-+|+||+.... |....+.+...+... ..|..|
T Consensus 124 ~~~~~~v~~~l~~l~L~~~~~~~~~~LSgGq~QRVaLARAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~ti 203 (377)
T PRK11607 124 AEIASRVNEMLGLVHMQEFAKRKPHQLSGGQRQRVALARSLAKRPKLLLLDEPMGALDKKLRDRMQLEVVDILERVGVTC 203 (377)
T ss_pred HHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEE
Confidence 112234444444431 11233444455678888899999999998665 433444444333221 236779
Q ss_pred EEEcCCHHHHHHhCC
Q 047321 244 LITTHDRSVALQLGS 258 (807)
Q Consensus 244 liTTR~~~v~~~~~~ 258 (807)
|++|++...+..+..
T Consensus 204 i~vTHd~~ea~~laD 218 (377)
T PRK11607 204 VMVTHDQEEAMTMAG 218 (377)
T ss_pred EEEcCCHHHHHHhCC
Confidence 999999887666554
No 397
>PRK14263 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.06 E-value=0.0074 Score=62.35 Aligned_cols=61 Identities=16% Similarity=0.135 Sum_probs=41.3
Q ss_pred HHHHHHHHHHHhCCceEEEEeCCCCC-CccChHHHHHhhcCCCCCcEEEEEcCCHHHHHHhC
Q 047321 197 ESLMKQIQEYITGKKIFLVLDDVWDG-DYKKWDPFFSCLKNGHHESKILITTHDRSVALQLG 257 (807)
Q Consensus 197 ~~~~~~l~~~l~~k~~LlVlDdv~~~-~~~~~~~l~~~l~~~~~gs~IliTTR~~~v~~~~~ 257 (807)
+...-.+.+.+..++-++++|++... |...-+.+...+.....+..||++|++.+....+.
T Consensus 154 ~~qrv~laral~~~p~llllDEPtsgLD~~~~~~l~~~l~~~~~~~tii~isH~~~~i~~~~ 215 (261)
T PRK14263 154 QQQRLCIARAIATEPEVLLLDEPCSALDPIATRRVEELMVELKKDYTIALVTHNMQQAIRVA 215 (261)
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhC
Confidence 33444567777788999999999664 44444556665554444677999999987655433
No 398
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=97.06 E-value=0.0059 Score=60.94 Aligned_cols=25 Identities=32% Similarity=0.360 Sum_probs=22.2
Q ss_pred CceEEEEEccCCChHHHHHHHHHcC
Q 047321 130 GLDVISLVGLGGIGKTTLAQLAYNN 154 (807)
Q Consensus 130 ~~~vi~I~G~gGiGKTtLa~~v~~~ 154 (807)
.-.+++|+|++|+|||||++.++.-
T Consensus 12 ~Ge~~~l~G~NGsGKSTLlk~i~Gl 36 (213)
T PRK15177 12 YHEHIGILAAPGSGKTTLTRLLCGL 36 (213)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4579999999999999999999863
No 399
>PRK06526 transposase; Provisional
Probab=97.06 E-value=0.0017 Score=66.20 Aligned_cols=102 Identities=18% Similarity=0.252 Sum_probs=53.6
Q ss_pred CceEEEEEccCCChHHHHHHHHHcCcccccccceEEEEEeCCCCCHHHHHHHHHHHcCCCCCCCccHHHHHHHHHHHHhC
Q 047321 130 GLDVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSNTFEEISVAKAIIEGLGVSAFGLSEFESLMKQIQEYITG 209 (807)
Q Consensus 130 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~ 209 (807)
...-+.|+|++|+|||+||..+..... ...+. +.|+ +..+++..+..... . .. ....+.+. .
T Consensus 97 ~~~nlll~Gp~GtGKThLa~al~~~a~-~~g~~-v~f~------t~~~l~~~l~~~~~----~-~~---~~~~l~~l--~ 158 (254)
T PRK06526 97 GKENVVFLGPPGTGKTHLAIGLGIRAC-QAGHR-VLFA------TAAQWVARLAAAHH----A-GR---LQAELVKL--G 158 (254)
T ss_pred cCceEEEEeCCCCchHHHHHHHHHHHH-HCCCc-hhhh------hHHHHHHHHHHHHh----c-Cc---HHHHHHHh--c
Confidence 345689999999999999999876322 22222 2232 23344444432211 0 11 11222222 2
Q ss_pred CceEEEEeCCCCCCccChH--HHHHhhcC-CCCCcEEEEEcCCH
Q 047321 210 KKIFLVLDDVWDGDYKKWD--PFFSCLKN-GHHESKILITTHDR 250 (807)
Q Consensus 210 k~~LlVlDdv~~~~~~~~~--~l~~~l~~-~~~gs~IliTTR~~ 250 (807)
+.-+||+||+.......+. .+...+.. ...++ +|+||...
T Consensus 159 ~~dlLIIDD~g~~~~~~~~~~~L~~li~~r~~~~s-~IitSn~~ 201 (254)
T PRK06526 159 RYPLLIVDEVGYIPFEPEAANLFFQLVSSRYERAS-LIVTSNKP 201 (254)
T ss_pred cCCEEEEcccccCCCCHHHHHHHHHHHHHHHhcCC-EEEEcCCC
Confidence 4569999999644322232 24444432 23344 78887653
No 400
>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional
Probab=97.05 E-value=0.0045 Score=66.12 Aligned_cols=58 Identities=17% Similarity=0.188 Sum_probs=39.9
Q ss_pred HHHHHHHHhCCceEEEEeCCCCC-CccChHHHHHhhcCC--CCCcEEEEEcCCHHHHHHhC
Q 047321 200 MKQIQEYITGKKIFLVLDDVWDG-DYKKWDPFFSCLKNG--HHESKILITTHDRSVALQLG 257 (807)
Q Consensus 200 ~~~l~~~l~~k~~LlVlDdv~~~-~~~~~~~l~~~l~~~--~~gs~IliTTR~~~v~~~~~ 257 (807)
.-.|.+.+..++-+||+|++.+. |...-..+...+... ..|..||++|++..++..+.
T Consensus 169 Rv~IArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~~~~~~~ 229 (330)
T PRK09473 169 RVMIAMALLCRPKLLIADEPTTALDVTVQAQIMTLLNELKREFNTAIIMITHDLGVVAGIC 229 (330)
T ss_pred HHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEECCHHHHHHhC
Confidence 34467777888999999999665 444444455554432 23678999999988876543
No 401
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=97.05 E-value=0.0059 Score=71.59 Aligned_cols=60 Identities=15% Similarity=0.148 Sum_probs=41.1
Q ss_pred HHHHHHHHHHHhCCceEEEEeCCCCC-CccChHHHHHhhcCCCCCcEEEEEcCCHHHHHHhCC
Q 047321 197 ESLMKQIQEYITGKKIFLVLDDVWDG-DYKKWDPFFSCLKNGHHESKILITTHDRSVALQLGS 258 (807)
Q Consensus 197 ~~~~~~l~~~l~~k~~LlVlDdv~~~-~~~~~~~l~~~l~~~~~gs~IliTTR~~~v~~~~~~ 258 (807)
....-.+.+.+-.++-+|+||++.+. |......+...+... .+ .||++|++......+.+
T Consensus 154 erqRv~LA~aL~~~P~lLLLDEPtn~LD~~~~~~L~~~L~~~-~~-tviivsHd~~~l~~~~d 214 (638)
T PRK10636 154 WRMRLNLAQALICRSDLLLLDEPTNHLDLDAVIWLEKWLKSY-QG-TLILISHDRDFLDPIVD 214 (638)
T ss_pred HHHHHHHHHHHccCCCEEEEcCCCCcCCHHHHHHHHHHHHhC-CC-eEEEEeCCHHHHHHhcC
Confidence 33445577788888999999999775 444444455565543 23 69999999987766543
No 402
>PRK13409 putative ATPase RIL; Provisional
Probab=97.05 E-value=0.0047 Score=71.36 Aligned_cols=63 Identities=16% Similarity=0.082 Sum_probs=41.8
Q ss_pred HHHHHHHHHHHHhCCceEEEEeCCCCC-CccChHHHHHhhcCCCCCcEEEEEcCCHHHHHHhCC
Q 047321 196 FESLMKQIQEYITGKKIFLVLDDVWDG-DYKKWDPFFSCLKNGHHESKILITTHDRSVALQLGS 258 (807)
Q Consensus 196 ~~~~~~~l~~~l~~k~~LlVlDdv~~~-~~~~~~~l~~~l~~~~~gs~IliTTR~~~v~~~~~~ 258 (807)
.+...-.+...+..++-+++||++.+. |...-..+...+.....|..||++|++......+..
T Consensus 216 Ge~qrv~ia~al~~~p~lllLDEPts~LD~~~~~~l~~~i~~l~~g~tvIivsHd~~~l~~~~D 279 (590)
T PRK13409 216 GELQRVAIAAALLRDADFYFFDEPTSYLDIRQRLNVARLIRELAEGKYVLVVEHDLAVLDYLAD 279 (590)
T ss_pred HHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCC
Confidence 344445577778888999999998765 444444444444432226779999999887766543
No 403
>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.05 E-value=0.0015 Score=68.13 Aligned_cols=58 Identities=16% Similarity=0.129 Sum_probs=40.4
Q ss_pred HHHHHHHHHHhCCceEEEEeCCCCC-CccChHHHHHhhcCC--CCCcEEEEEcCCHHHHHH
Q 047321 198 SLMKQIQEYITGKKIFLVLDDVWDG-DYKKWDPFFSCLKNG--HHESKILITTHDRSVALQ 255 (807)
Q Consensus 198 ~~~~~l~~~l~~k~~LlVlDdv~~~-~~~~~~~l~~~l~~~--~~gs~IliTTR~~~v~~~ 255 (807)
...-.+.+.+..++-++++|++... |......+...+... ..|..||++|++.+.+..
T Consensus 146 ~qrv~lAraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiil~sH~~~~~~~ 206 (277)
T PRK13642 146 KQRVAVAGIIALRPEIIILDESTSMLDPTGRQEIMRVIHEIKEKYQLTVLSITHDLDEAAS 206 (277)
T ss_pred HHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHh
Confidence 3344567777888889999999665 555555666666533 236789999999877653
No 404
>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.05 E-value=0.0056 Score=62.93 Aligned_cols=57 Identities=18% Similarity=0.145 Sum_probs=38.3
Q ss_pred HHHHHHHHhCCceEEEEeCCCCC-CccChHHHHHhhcCCCCCcEEEEEcCCHHHHHHh
Q 047321 200 MKQIQEYITGKKIFLVLDDVWDG-DYKKWDPFFSCLKNGHHESKILITTHDRSVALQL 256 (807)
Q Consensus 200 ~~~l~~~l~~k~~LlVlDdv~~~-~~~~~~~l~~~l~~~~~gs~IliTTR~~~v~~~~ 256 (807)
.-.+.+.+-.++-++++|++... |......+...+.....+..||++|++.+.+...
T Consensus 154 r~~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tili~sH~~~~~~~~ 211 (250)
T PRK14262 154 RLCIARALAVEPEVILLDEPTSALDPIATQRIEKLLEELSENYTIVIVTHNIGQAIRI 211 (250)
T ss_pred HHHHHHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHh
Confidence 34466677778889999999665 4444455555554433456799999998755443
No 405
>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.05 E-value=0.0061 Score=63.03 Aligned_cols=58 Identities=16% Similarity=0.092 Sum_probs=39.4
Q ss_pred HHHHHHHHHhCCceEEEEeCCCCC-CccChHHHHHhhcCCCCCcEEEEEcCCHHHHHHh
Q 047321 199 LMKQIQEYITGKKIFLVLDDVWDG-DYKKWDPFFSCLKNGHHESKILITTHDRSVALQL 256 (807)
Q Consensus 199 ~~~~l~~~l~~k~~LlVlDdv~~~-~~~~~~~l~~~l~~~~~gs~IliTTR~~~v~~~~ 256 (807)
..-.+.+.+..++-++++|++... |......+...+.....+..||++|++.+....+
T Consensus 162 qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivtH~~~~~~~~ 220 (259)
T PRK14274 162 QRLCIARALATNPDVLLMDEPTSALDPVSTRKIEELILKLKEKYTIVIVTHNMQQAARV 220 (259)
T ss_pred HHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhcCCEEEEEEcCHHHHHHh
Confidence 344466777788889999999765 5555555666555433356789999987765443
No 406
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=97.05 E-value=0.017 Score=65.71 Aligned_cols=185 Identities=15% Similarity=0.049 Sum_probs=95.0
Q ss_pred CccccccchHHHHHHHHh---CCCC---CCCCCceEEEEEccCCChHHHHHHHHHcCcccccccceEEEEEeCCCCCHHH
Q 047321 104 GGVCGRVDEKNELLSKLL---CGSS---EQQKGLDVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSNTFEEIS 177 (807)
Q Consensus 104 ~~~vGR~~~~~~l~~~L~---~~~~---~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~ 177 (807)
.+++|-++.++++.+.+. .+.. .+....+-+.++|++|+|||++|+.+++.. ... ++.++. ..
T Consensus 55 ~di~g~~~~k~~l~~~~~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~--~~~-----~~~i~~----~~ 123 (495)
T TIGR01241 55 KDVAGIDEAKEELMEIVDFLKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLAKAVAGEA--GVP-----FFSISG----SD 123 (495)
T ss_pred HHhCCHHHHHHHHHHHHHHHHCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHc--CCC-----eeeccH----HH
Confidence 468888877666655442 1110 001234458899999999999999998742 212 222221 11
Q ss_pred HHHHHHHHcCCCCCCCccHHHHHHHHHHHHhCCceEEEEeCCCCCC----------ccChHHH----HHhhcC--CCCCc
Q 047321 178 VAKAIIEGLGVSAFGLSEFESLMKQIQEYITGKKIFLVLDDVWDGD----------YKKWDPF----FSCLKN--GHHES 241 (807)
Q Consensus 178 ~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~----------~~~~~~l----~~~l~~--~~~gs 241 (807)
+. ....+ .....+...+.......+.+|++||+..-. ...+... ...+.. ...+.
T Consensus 124 ~~----~~~~g-----~~~~~l~~~f~~a~~~~p~Il~iDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~~d~~~~~~~v 194 (495)
T TIGR01241 124 FV----EMFVG-----VGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGTNTGV 194 (495)
T ss_pred HH----HHHhc-----ccHHHHHHHHHHHHhcCCCEEEEechhhhhhccccCcCCccHHHHHHHHHHHhhhccccCCCCe
Confidence 11 11100 011223333444445678999999984310 1112222 212211 12344
Q ss_pred EEEEEcCCHHHH-HHh----CCCceEeCCCCChhhHHHHHHHHHhccCCccCccchHHHHHHHHHHcCC-CHHHHHHH
Q 047321 242 KILITTHDRSVA-LQL----GSIDIIPVKELGEGECWLLFKQIAFLRRSFEDCEKLEPIGRKIASKCKG-LPLAAKVI 313 (807)
Q Consensus 242 ~IliTTR~~~v~-~~~----~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~~~~I~~~c~g-lPLai~~~ 313 (807)
.||.||...+.. ..+ .-...+.++..+.++-.++|..+.-.... .... ....+++.+.| .+-.|..+
T Consensus 195 ~vI~aTn~~~~ld~al~r~gRfd~~i~i~~Pd~~~R~~il~~~l~~~~~-~~~~----~l~~la~~t~G~sgadl~~l 267 (495)
T TIGR01241 195 IVIAATNRPDVLDPALLRPGRFDRQVVVDLPDIKGREEILKVHAKNKKL-APDV----DLKAVARRTPGFSGADLANL 267 (495)
T ss_pred EEEEecCChhhcCHHHhcCCcceEEEEcCCCCHHHHHHHHHHHHhcCCC-Ccch----hHHHHHHhCCCCCHHHHHHH
Confidence 566666554321 111 12357889988988888888876632211 1111 23577888877 44444443
No 407
>PRK14258 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.04 E-value=0.0067 Score=62.73 Aligned_cols=61 Identities=18% Similarity=0.122 Sum_probs=41.7
Q ss_pred HHHHHHHHHHHhCCceEEEEeCCCCC-CccChHHHHHhhcCC--CCCcEEEEEcCCHHHHHHhC
Q 047321 197 ESLMKQIQEYITGKKIFLVLDDVWDG-DYKKWDPFFSCLKNG--HHESKILITTHDRSVALQLG 257 (807)
Q Consensus 197 ~~~~~~l~~~l~~k~~LlVlDdv~~~-~~~~~~~l~~~l~~~--~~gs~IliTTR~~~v~~~~~ 257 (807)
+...-.+.+.+..++-+++||++... |......+...+... ..|..||++|++...+..+.
T Consensus 155 q~qrv~laral~~~p~vllLDEP~~~LD~~~~~~l~~~l~~l~~~~~~tiiivsH~~~~i~~~~ 218 (261)
T PRK14258 155 QQQRLCIARALAVKPKVLLMDEPCFGLDPIASMKVESLIQSLRLRSELTMVIVSHNLHQVSRLS 218 (261)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhc
Confidence 33344566777788899999999665 555555566666542 24678999999988766544
No 408
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=97.04 E-value=0.0026 Score=62.54 Aligned_cols=57 Identities=19% Similarity=0.283 Sum_probs=36.8
Q ss_pred HHHHHHhCCceEEEEeCCCCC-CccChHHHHHhhc--CCCCCcEEEEEcCCHHHHHHhCC
Q 047321 202 QIQEYITGKKIFLVLDDVWDG-DYKKWDPFFSCLK--NGHHESKILITTHDRSVALQLGS 258 (807)
Q Consensus 202 ~l~~~l~~k~~LlVlDdv~~~-~~~~~~~l~~~l~--~~~~gs~IliTTR~~~v~~~~~~ 258 (807)
-+.+.+...+-++.+|+.... |+-.-..+...+. ...-|..||..|++.+-|-.++.
T Consensus 145 Gv~RALAadP~ilLMDEPFgALDpI~R~~lQ~e~~~lq~~l~kTivfVTHDidEA~kLad 204 (309)
T COG1125 145 GVARALAADPPILLMDEPFGALDPITRKQLQEEIKELQKELGKTIVFVTHDIDEALKLAD 204 (309)
T ss_pred HHHHHHhcCCCeEeecCCccccChhhHHHHHHHHHHHHHHhCCEEEEEecCHHHHHhhhc
Confidence 366777788889999998764 3222223322222 12346679999999988877654
No 409
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=97.04 E-value=0.028 Score=59.80 Aligned_cols=93 Identities=13% Similarity=0.133 Sum_probs=66.1
Q ss_pred CCceEEEEeCCCCCCccChHHHHHhhcCCCCCcEEEEEcCCHH-HHHH-hCCCceEeCCCCChhhHHHHHHHHHhccCCc
Q 047321 209 GKKIFLVLDDVWDGDYKKWDPFFSCLKNGHHESKILITTHDRS-VALQ-LGSIDIIPVKELGEGECWLLFKQIAFLRRSF 286 (807)
Q Consensus 209 ~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~IliTTR~~~-v~~~-~~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~ 286 (807)
+++-++|+|++...+...+..+...+..-.+++.+|++|.+.+ +... ..-...+.+.+++.++..+.+.... .
T Consensus 131 ~~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~LLpTI~SRcq~i~~~~~~~~~~~~~L~~~~----~- 205 (342)
T PRK06964 131 GGARVVVLYPAEALNVAAANALLKTLEEPPPGTVFLLVSARIDRLLPTILSRCRQFPMTVPAPEAAAAWLAAQG----V- 205 (342)
T ss_pred CCceEEEEechhhcCHHHHHHHHHHhcCCCcCcEEEEEECChhhCcHHHHhcCEEEEecCCCHHHHHHHHHHcC----C-
Confidence 5566889999987777888889999988777887777766643 3322 2235689999999999998887641 1
Q ss_pred cCccchHHHHHHHHHHcCCCHHHHHHH
Q 047321 287 EDCEKLEPIGRKIASKCKGLPLAAKVI 313 (807)
Q Consensus 287 ~~~~~~~~~~~~I~~~c~glPLai~~~ 313 (807)
. + ...++..++|.|..+..+
T Consensus 206 -~-~-----~~~~l~~~~Gsp~~Al~~ 225 (342)
T PRK06964 206 -A-D-----ADALLAEAGGAPLAALAL 225 (342)
T ss_pred -C-h-----HHHHHHHcCCCHHHHHHH
Confidence 1 1 133578889999765543
No 410
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=97.04 E-value=0.0055 Score=69.79 Aligned_cols=63 Identities=13% Similarity=0.139 Sum_probs=42.2
Q ss_pred cHHHHHHHHHHHHhCCceEEEEeCCCCC-CccChHHHHHhhcCC-CCCcEEEEEcCCHHHHHHhC
Q 047321 195 EFESLMKQIQEYITGKKIFLVLDDVWDG-DYKKWDPFFSCLKNG-HHESKILITTHDRSVALQLG 257 (807)
Q Consensus 195 ~~~~~~~~l~~~l~~k~~LlVlDdv~~~-~~~~~~~l~~~l~~~-~~gs~IliTTR~~~v~~~~~ 257 (807)
..+...-.+.+.+..++-+++||++... |......+...+... ..|..||++|++.+.+....
T Consensus 138 gG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tvii~tH~~~~~~~~~ 202 (490)
T PRK10938 138 TGETRKTLLCQALMSEPDLLILDEPFDGLDVASRQQLAELLASLHQSGITLVLVLNRFDEIPDFV 202 (490)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHhhC
Confidence 3344455577778888999999999775 444444555555432 34678999999977665443
No 411
>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional
Probab=97.03 E-value=0.0045 Score=66.15 Aligned_cols=59 Identities=12% Similarity=0.129 Sum_probs=41.2
Q ss_pred HHHHHHHHhCCceEEEEeCCCCC-CccChHHHHHhhcCC--CCCcEEEEEcCCHHHHHHhCC
Q 047321 200 MKQIQEYITGKKIFLVLDDVWDG-DYKKWDPFFSCLKNG--HHESKILITTHDRSVALQLGS 258 (807)
Q Consensus 200 ~~~l~~~l~~k~~LlVlDdv~~~-~~~~~~~l~~~l~~~--~~gs~IliTTR~~~v~~~~~~ 258 (807)
.-.+.+.+..++-+||+|+.... |......+...+... ..|..||++|++...+..+..
T Consensus 169 Rv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~~~til~iTHdl~~~~~~~d 230 (331)
T PRK15079 169 RIGIARALILEPKLIICDEPVSALDVSIQAQVVNLLQQLQREMGLSLIFIAHDLAVVKHISD 230 (331)
T ss_pred HHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCC
Confidence 44467777888999999999765 444444555555432 246789999999988776543
No 412
>PRK14238 phosphate transporter ATP-binding protein; Provisional
Probab=97.03 E-value=0.0058 Score=63.58 Aligned_cols=57 Identities=14% Similarity=0.109 Sum_probs=39.0
Q ss_pred HHHHHHHhCCceEEEEeCCCCC-CccChHHHHHhhcCCCCCcEEEEEcCCHHHHHHhC
Q 047321 201 KQIQEYITGKKIFLVLDDVWDG-DYKKWDPFFSCLKNGHHESKILITTHDRSVALQLG 257 (807)
Q Consensus 201 ~~l~~~l~~k~~LlVlDdv~~~-~~~~~~~l~~~l~~~~~gs~IliTTR~~~v~~~~~ 257 (807)
-.+.+.+..++-+++||++... |......+...+.....+..||++|++.+....+.
T Consensus 176 v~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivsH~~~~i~~~~ 233 (271)
T PRK14238 176 LCIARCLAIEPDVILMDEPTSALDPISTLKVEELVQELKKDYSIIIVTHNMQQAARIS 233 (271)
T ss_pred HHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHcCCEEEEEEcCHHHHHHhC
Confidence 3456666778889999999765 45555556555554334567999999988765543
No 413
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=97.03 E-value=0.0031 Score=59.83 Aligned_cols=40 Identities=35% Similarity=0.409 Sum_probs=28.6
Q ss_pred EEEEEccCCChHHHHHHHHHcCcccccccceEEEEEeCCCCC
Q 047321 133 VISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSNTFE 174 (807)
Q Consensus 133 vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~ 174 (807)
++.|+|++|+||||++..+... ....-..++|+.......
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~~--~~~~~~~v~~~~~e~~~~ 40 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALN--IATKGGKVVYVDIEEEIE 40 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHHH--HHhcCCEEEEEECCcchH
Confidence 4689999999999999998763 222334567777665543
No 414
>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=97.03 E-value=0.0012 Score=62.55 Aligned_cols=54 Identities=20% Similarity=0.287 Sum_probs=36.8
Q ss_pred HHHHHhCCceEEEEeCCCCC-CccChHHHHHhhcCC-CCCcEEEEEcCCHHHHHHh
Q 047321 203 IQEYITGKKIFLVLDDVWDG-DYKKWDPFFSCLKNG-HHESKILITTHDRSVALQL 256 (807)
Q Consensus 203 l~~~l~~k~~LlVlDdv~~~-~~~~~~~l~~~l~~~-~~gs~IliTTR~~~v~~~~ 256 (807)
+.+.+-.++-++|||+..+. |...-..+...+... ..|-.||..|+.-+-...+
T Consensus 144 iARAlvh~P~i~vlDEP~sGLDi~~~r~~~dfi~q~k~egr~viFSSH~m~Eveal 199 (245)
T COG4555 144 IARALVHDPSILVLDEPTSGLDIRTRRKFHDFIKQLKNEGRAVIFSSHIMQEVEAL 199 (245)
T ss_pred HHHHHhcCCCeEEEcCCCCCccHHHHHHHHHHHHHhhcCCcEEEEecccHHHHHHh
Confidence 66777788999999999765 333344455555544 3477789999986554433
No 415
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=97.03 E-value=0.005 Score=71.92 Aligned_cols=63 Identities=16% Similarity=0.107 Sum_probs=41.8
Q ss_pred HHHHHHHHhCCceEEEEeCCCCC-CccChHHHHHhhcCCCCCcEEEEEcCCHHHHHHhCCCceEeC
Q 047321 200 MKQIQEYITGKKIFLVLDDVWDG-DYKKWDPFFSCLKNGHHESKILITTHDRSVALQLGSIDIIPV 264 (807)
Q Consensus 200 ~~~l~~~l~~k~~LlVlDdv~~~-~~~~~~~l~~~l~~~~~gs~IliTTR~~~v~~~~~~~~~~~l 264 (807)
.-.+.+.+-.++-++|||++.+. |...-..+...+....++..||++||+......+ ++++.+
T Consensus 479 RialARall~~~~iliLDEpts~LD~~t~~~i~~~l~~~~~~~tvIiitHr~~~~~~~--D~ii~l 542 (588)
T PRK13657 479 RLAIARALLKDPPILILDEATSALDVETEAKVKAALDELMKGRTTFIIAHRLSTVRNA--DRILVF 542 (588)
T ss_pred HHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHhcCCEEEEEEecHHHHHhC--CEEEEE
Confidence 34466777778889999999765 4444445666665554566788888888776543 334444
No 416
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=97.03 E-value=0.0069 Score=69.69 Aligned_cols=127 Identities=18% Similarity=0.229 Sum_probs=74.1
Q ss_pred CceEEEEEccCCChHHHHHHHHHcCcccc-c--ccc---eEEEEEeCC------CCCHHH-------------HHHHHHH
Q 047321 130 GLDVISLVGLGGIGKTTLAQLAYNNDEVK-R--NFE---KVIWVCVSN------TFEEIS-------------VAKAIIE 184 (807)
Q Consensus 130 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~-~--~f~---~~~wv~~~~------~~~~~~-------------~~~~i~~ 184 (807)
.-.+++|+|++|+|||||++.++.-.... + .|+ .+.++.-.. ..++.+ ....+++
T Consensus 344 ~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~~~~~~i~~~~q~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~l~ 423 (530)
T PRK15064 344 AGERLAIIGENGVGKTTLLRTLVGELEPDSGTVKWSENANIGYYAQDHAYDFENDLTLFDWMSQWRQEGDDEQAVRGTLG 423 (530)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCceEEEEEcccccccCCCCCcHHHHHHHhccCCccHHHHHHHHH
Confidence 45699999999999999999997632110 1 121 122322110 011211 1223444
Q ss_pred HcCCC-C------CCCccHHHHHHHHHHHHhCCceEEEEeCCCCC-CccChHHHHHhhcCCCCCcEEEEEcCCHHHHHHh
Q 047321 185 GLGVS-A------FGLSEFESLMKQIQEYITGKKIFLVLDDVWDG-DYKKWDPFFSCLKNGHHESKILITTHDRSVALQL 256 (807)
Q Consensus 185 ~l~~~-~------~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~-~~~~~~~l~~~l~~~~~gs~IliTTR~~~v~~~~ 256 (807)
.++.. . ......+...-.+.+.+..++-+++||++.+. |....+.+...+... .+ .||++|++...+..+
T Consensus 424 ~~~l~~~~~~~~~~~LSgGq~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~-~~-tvi~vsHd~~~~~~~ 501 (530)
T PRK15064 424 RLLFSQDDIKKSVKVLSGGEKGRMLFGKLMMQKPNVLVMDEPTNHMDMESIESLNMALEKY-EG-TLIFVSHDREFVSSL 501 (530)
T ss_pred HcCCChhHhcCcccccCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHC-CC-EEEEEeCCHHHHHHh
Confidence 44331 0 11122344445577778889999999999765 445555566666554 34 699999999877665
Q ss_pred CC
Q 047321 257 GS 258 (807)
Q Consensus 257 ~~ 258 (807)
+.
T Consensus 502 ~d 503 (530)
T PRK15064 502 AT 503 (530)
T ss_pred CC
Confidence 43
No 417
>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=97.03 E-value=0.0066 Score=59.36 Aligned_cols=51 Identities=14% Similarity=0.244 Sum_probs=36.0
Q ss_pred HHHhCCceEEEEeCCCCC-CccChHHHHHhhcC-CCCCcEEEEEcCCHHHHHH
Q 047321 205 EYITGKKIFLVLDDVWDG-DYKKWDPFFSCLKN-GHHESKILITTHDRSVALQ 255 (807)
Q Consensus 205 ~~l~~k~~LlVlDdv~~~-~~~~~~~l~~~l~~-~~~gs~IliTTR~~~v~~~ 255 (807)
..+-.++-|+|||+..+. |+-.-+.+.....+ ...|..||..|+...-+..
T Consensus 143 saviHePeLlILDEPFSGLDPVN~elLk~~I~~lk~~GatIifSsH~Me~vEe 195 (300)
T COG4152 143 SAVIHEPELLILDEPFSGLDPVNVELLKDAIFELKEEGATIIFSSHRMEHVEE 195 (300)
T ss_pred HHHhcCCCEEEecCCccCCChhhHHHHHHHHHHHHhcCCEEEEecchHHHHHH
Confidence 344578889999999876 55555666666543 4678899999987654433
No 418
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=97.02 E-value=0.007 Score=71.08 Aligned_cols=60 Identities=18% Similarity=0.183 Sum_probs=41.5
Q ss_pred HHHHHHHHHHHhCCceEEEEeCCCCC-CccChHHHHHhhcCCCCCcEEEEEcCCHHHHHHhCC
Q 047321 197 ESLMKQIQEYITGKKIFLVLDDVWDG-DYKKWDPFFSCLKNGHHESKILITTHDRSVALQLGS 258 (807)
Q Consensus 197 ~~~~~~l~~~l~~k~~LlVlDdv~~~-~~~~~~~l~~~l~~~~~gs~IliTTR~~~v~~~~~~ 258 (807)
+...-.+.+.+-.++-+|+||++.+. |...-+.+...+.... + .||++|++......+.+
T Consensus 161 ekqRv~LAraL~~~P~lLLLDEPt~~LD~~~~~~L~~~L~~~~-~-tvlivsHd~~~l~~~~d 221 (635)
T PRK11147 161 WLRKAALGRALVSNPDVLLLDEPTNHLDIETIEWLEGFLKTFQ-G-SIIFISHDRSFIRNMAT 221 (635)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHhCC-C-EEEEEeCCHHHHHHhcC
Confidence 33445577778888999999999775 4444444566665443 4 69999999887765543
No 419
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.02 E-value=2.3e-05 Score=86.64 Aligned_cols=107 Identities=20% Similarity=0.257 Sum_probs=61.9
Q ss_pred cCcccccccccCCCccccchhhhccccCCCCCCcccEEEEccCCCCCCCcccccCCCCccEEeeccCccccccccccccc
Q 047321 675 AFPKLKSLEIDGMKELEEWNYRITRKENISIMPRLSSLQIMNCRKLKALPDYLLQTIALQKLSIYSCDLLEELPILEDRR 754 (807)
Q Consensus 675 ~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~lp~~l~~l~~L~~L~l~~c~~l~~lP~~~~~~ 754 (807)
-+|.|+.|+|+. +++..+.. +..++.|+.|+|+.+ .|+.+|.--..--.|+.|.|++ +.++++ ..
T Consensus 185 ll~ale~LnLsh-Nk~~~v~~-------Lr~l~~LkhLDlsyN-~L~~vp~l~~~gc~L~~L~lrn-N~l~tL-----~g 249 (1096)
T KOG1859|consen 185 LLPALESLNLSH-NKFTKVDN-------LRRLPKLKHLDLSYN-CLRHVPQLSMVGCKLQLLNLRN-NALTTL-----RG 249 (1096)
T ss_pred HHHHhhhhccch-hhhhhhHH-------HHhcccccccccccc-hhccccccchhhhhheeeeecc-cHHHhh-----hh
Confidence 456666666665 23333322 234666777777655 5666663211112377777777 456666 46
Q ss_pred CCCCCCCCeeeeccCCCcccCC--ccCCCCCcccccccccchhhh
Q 047321 755 TTDIPRLSSLAIWYCPKLKVLP--DYLLRTTTLQAGEQDYENEKF 797 (807)
Q Consensus 755 ~~~l~~L~~L~i~~c~~l~~lP--~~l~~l~~L~~L~l~~~~~~~ 797 (807)
++++.+|+.|+++++ .+.... +-+..|..|..|++.+||+-+
T Consensus 250 ie~LksL~~LDlsyN-ll~~hseL~pLwsLs~L~~L~LeGNPl~c 293 (1096)
T KOG1859|consen 250 IENLKSLYGLDLSYN-LLSEHSELEPLWSLSSLIVLWLEGNPLCC 293 (1096)
T ss_pred HHhhhhhhccchhHh-hhhcchhhhHHHHHHHHHHHhhcCCcccc
Confidence 677778888887763 222221 123456777888888887644
No 420
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=97.02 E-value=0.002 Score=67.64 Aligned_cols=129 Identities=22% Similarity=0.238 Sum_probs=71.9
Q ss_pred CceEEEEEccCCChHHHHHHHHHcCcccc-----------ccc----ceEEEEE----------eCCC------------
Q 047321 130 GLDVISLVGLGGIGKTTLAQLAYNNDEVK-----------RNF----EKVIWVC----------VSNT------------ 172 (807)
Q Consensus 130 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~-----------~~f----~~~~wv~----------~~~~------------ 172 (807)
.-..++++|++|+|||||.+.++.=.... ... ..++.|. |.++
T Consensus 28 ~Gef~vllGPSGcGKSTlLr~IAGLe~~~~G~I~i~g~~vt~l~P~~R~iamVFQ~yALyPhmtV~~Niaf~Lk~~~~~k 107 (338)
T COG3839 28 DGEFVVLLGPSGCGKSTLLRMIAGLEEPTSGEILIDGRDVTDLPPEKRGIAMVFQNYALYPHMTVYENIAFGLKLRGVPK 107 (338)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhHCCEEEEeCCccccCCCcHHHHhhhhhhhCCCch
Confidence 44689999999999999999996421110 000 0111111 1000
Q ss_pred CCHHHHHHHHHHHcCCCC------CCCccHHHHHHHHHHHHhCCceEEEEeCCCCC-CccChHHHHHhhcC--CCCCcEE
Q 047321 173 FEEISVAKAIIEGLGVSA------FGLSEFESLMKQIQEYITGKKIFLVLDDVWDG-DYKKWDPFFSCLKN--GHHESKI 243 (807)
Q Consensus 173 ~~~~~~~~~i~~~l~~~~------~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~-~~~~~~~l~~~l~~--~~~gs~I 243 (807)
....+-.+++++.++... ..........-.+.+.+-.++-++.||+.-+. |..--..++..+.. ..-|..+
T Consensus 108 ~ei~~rV~eva~~L~l~~lL~r~P~~LSGGQrQRVAlaRAlVr~P~v~L~DEPlSnLDa~lR~~mr~ei~~lh~~l~~T~ 187 (338)
T COG3839 108 AEIDKRVKEVAKLLGLEHLLNRKPLQLSGGQRQRVALARALVRKPKVFLLDEPLSNLDAKLRVLMRSEIKKLHERLGTTT 187 (338)
T ss_pred HHHHHHHHHHHHHcCChhHHhcCcccCChhhHHHHHHHHHHhcCCCEEEecCchhHhhHHHHHHHHHHHHHHHHhcCCcE
Confidence 011223344444444321 22233344445677888888889999998553 22222234444432 2346778
Q ss_pred EEEcCCHHHHHHhCC
Q 047321 244 LITTHDRSVALQLGS 258 (807)
Q Consensus 244 liTTR~~~v~~~~~~ 258 (807)
|..|++..-|..++.
T Consensus 188 IYVTHDq~EAmtlad 202 (338)
T COG3839 188 IYVTHDQVEAMTLAD 202 (338)
T ss_pred EEEcCCHHHHHhhCC
Confidence 999999888777665
No 421
>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.01 E-value=0.007 Score=62.25 Aligned_cols=57 Identities=18% Similarity=0.162 Sum_probs=39.0
Q ss_pred HHHHHHHHhCCceEEEEeCCCCC-CccChHHHHHhhcCCCCCcEEEEEcCCHHHHHHh
Q 047321 200 MKQIQEYITGKKIFLVLDDVWDG-DYKKWDPFFSCLKNGHHESKILITTHDRSVALQL 256 (807)
Q Consensus 200 ~~~l~~~l~~k~~LlVlDdv~~~-~~~~~~~l~~~l~~~~~gs~IliTTR~~~v~~~~ 256 (807)
.-.+.+.+..++-++++|++... |......+...+.....|..||++|++......+
T Consensus 157 rv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiiiisH~~~~~~~~ 214 (251)
T PRK14244 157 RLCIARAIAVKPTMLLMDEPCSALDPVATNVIENLIQELKKNFTIIVVTHSMKQAKKV 214 (251)
T ss_pred HHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHhh
Confidence 34466677778889999999664 4444555666655433467899999998765543
No 422
>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.01 E-value=0.0053 Score=63.13 Aligned_cols=57 Identities=16% Similarity=0.126 Sum_probs=39.0
Q ss_pred HHHHHHHHhCCceEEEEeCCCCC-CccChHHHHHhhcCCCCCcEEEEEcCCHHHHHHh
Q 047321 200 MKQIQEYITGKKIFLVLDDVWDG-DYKKWDPFFSCLKNGHHESKILITTHDRSVALQL 256 (807)
Q Consensus 200 ~~~l~~~l~~k~~LlVlDdv~~~-~~~~~~~l~~~l~~~~~gs~IliTTR~~~v~~~~ 256 (807)
.-.+.+.+..++-++++|++.+. |....+.+...+.....+..||++|++......+
T Consensus 155 r~~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiiiisH~~~~~~~~ 212 (251)
T PRK14251 155 RICIARALAVRPKVVLLDEPTSALDPISSSEIEETLMELKHQYTFIMVTHNLQQAGRI 212 (251)
T ss_pred HHHHHHHHhcCCCEEEecCCCccCCHHHHHHHHHHHHHHHcCCeEEEEECCHHHHHhh
Confidence 34466777788889999999765 4445555656555433456799999998765543
No 423
>PRK14271 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.01 E-value=0.0075 Score=62.86 Aligned_cols=59 Identities=14% Similarity=0.167 Sum_probs=38.2
Q ss_pred HHHHHHHHHhCCceEEEEeCCCCC-CccChHHHHHhhcCCCCCcEEEEEcCCHHHHHHhC
Q 047321 199 LMKQIQEYITGKKIFLVLDDVWDG-DYKKWDPFFSCLKNGHHESKILITTHDRSVALQLG 257 (807)
Q Consensus 199 ~~~~l~~~l~~k~~LlVlDdv~~~-~~~~~~~l~~~l~~~~~gs~IliTTR~~~v~~~~~ 257 (807)
..-.+.+.+-..+-++++|++... |...-..+...+.....+..||++|++......+.
T Consensus 170 qrl~LAral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tiiivsH~~~~~~~~~ 229 (276)
T PRK14271 170 QLLCLARTLAVNPEVLLLDEPTSALDPTTTEKIEEFIRSLADRLTVIIVTHNLAQAARIS 229 (276)
T ss_pred HHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhC
Confidence 344466777778889999999665 43334445555544323467999999987655433
No 424
>cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends. They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini.
Probab=97.01 E-value=0.0091 Score=59.62 Aligned_cols=48 Identities=10% Similarity=0.137 Sum_probs=31.6
Q ss_pred CceEEEEeCCCCC-CccChHHHHHhhcCCC-CCcEEEEEcCCHHHHHHhC
Q 047321 210 KKIFLVLDDVWDG-DYKKWDPFFSCLKNGH-HESKILITTHDRSVALQLG 257 (807)
Q Consensus 210 k~~LlVlDdv~~~-~~~~~~~l~~~l~~~~-~gs~IliTTR~~~v~~~~~ 257 (807)
.+-++++|++... |....+.+...+.... .|..||++|++.+......
T Consensus 151 ~~~~lllDEp~~~lD~~~~~~~~~~l~~~~~~~~tii~itH~~~~~~~~~ 200 (213)
T cd03279 151 RLEALFIDEGFGTLDPEALEAVATALELIRTENRMVGVISHVEELKERIP 200 (213)
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEECchHHHHhhC
Confidence 4568999998654 4444555555554332 3667999999987765543
No 425
>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional
Probab=97.01 E-value=0.0048 Score=63.99 Aligned_cols=60 Identities=13% Similarity=0.081 Sum_probs=40.4
Q ss_pred HHHHHHHHHHhCCceEEEEeCCCCC-CccChHHHHHhhcCC--CCCcEEEEEcCCHHHHHHhC
Q 047321 198 SLMKQIQEYITGKKIFLVLDDVWDG-DYKKWDPFFSCLKNG--HHESKILITTHDRSVALQLG 257 (807)
Q Consensus 198 ~~~~~l~~~l~~k~~LlVlDdv~~~-~~~~~~~l~~~l~~~--~~gs~IliTTR~~~v~~~~~ 257 (807)
...-.+.+.+-.++-++++|++... |....+.+...+... ..|..||++|++......+.
T Consensus 149 ~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~L~~l~~~~~~tiii~tH~~~~~~~~~ 211 (265)
T PRK10253 149 RQRAWIAMVLAQETAIMLLDEPTTWLDISHQIDLLELLSELNREKGYTLAAVLHDLNQACRYA 211 (265)
T ss_pred HHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhC
Confidence 3344466777788899999999664 445555565655442 23677999999987655443
No 426
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.00 E-value=0.0083 Score=63.84 Aligned_cols=113 Identities=11% Similarity=0.191 Sum_probs=59.9
Q ss_pred CceEEEEEccCCChHHHHHHHHHcCcccccccceEEEEEeCCCCCH--HHHHHHHHHHcCCCCCCCccHHHHHHHHHHHH
Q 047321 130 GLDVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSNTFEE--ISVAKAIIEGLGVSAFGLSEFESLMKQIQEYI 207 (807)
Q Consensus 130 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~--~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l 207 (807)
..++|+|+|++|+||||++..++.... ...+ .+..++. +.+.. .+-++...+.++.......+...+.+.+...-
T Consensus 240 ~~~vI~LVGptGvGKTTTiaKLA~~L~-~~Gk-kVglI~a-Dt~RiaAvEQLk~yae~lgipv~v~~d~~~L~~aL~~lk 316 (436)
T PRK11889 240 EVQTIALIGPTGVGKTTTLAKMAWQFH-GKKK-TVGFITT-DHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFK 316 (436)
T ss_pred CCcEEEEECCCCCcHHHHHHHHHHHHH-HcCC-cEEEEec-CCcchHHHHHHHHHhhhcCCcEEecCCHHHHHHHHHHHH
Confidence 458999999999999999999876321 1222 2334443 33332 22233334444433322334455555554443
Q ss_pred hC-CceEEEEeCCCCC--CccChHHHHHhhcCCCCCcEEEE
Q 047321 208 TG-KKIFLVLDDVWDG--DYKKWDPFFSCLKNGHHESKILI 245 (807)
Q Consensus 208 ~~-k~~LlVlDdv~~~--~~~~~~~l~~~l~~~~~gs~Ili 245 (807)
.. +.-++++|-.-.. +......+...+....+...++|
T Consensus 317 ~~~~~DvVLIDTaGRs~kd~~lm~EL~~~lk~~~PdevlLV 357 (436)
T PRK11889 317 EEARVDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLT 357 (436)
T ss_pred hccCCCEEEEeCccccCcCHHHHHHHHHHHhhcCCCeEEEE
Confidence 22 3467788977443 23334555555544433333444
No 427
>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional
Probab=97.00 E-value=0.0067 Score=62.84 Aligned_cols=58 Identities=14% Similarity=0.157 Sum_probs=40.4
Q ss_pred HHHHHHHHhCCceEEEEeCCCCC-CccChHHHHHhhcCCC--CCcEEEEEcCCHHHHHHhC
Q 047321 200 MKQIQEYITGKKIFLVLDDVWDG-DYKKWDPFFSCLKNGH--HESKILITTHDRSVALQLG 257 (807)
Q Consensus 200 ~~~l~~~l~~k~~LlVlDdv~~~-~~~~~~~l~~~l~~~~--~gs~IliTTR~~~v~~~~~ 257 (807)
.-.+.+.+..++-+|++|+..+. |....+.+...+.... .|..||++|++...+..+.
T Consensus 160 rv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~tH~~~~~~~~~ 220 (262)
T PRK09984 160 RVAIARALMQQAKVILADEPIASLDPESARIVMDTLRDINQNDGITVVVTLHQVDYALRYC 220 (262)
T ss_pred HHHHHHHHhcCCCEEEecCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhC
Confidence 34466777788889999999765 5555555666665432 3678999999988655443
No 428
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=97.00 E-value=0.0069 Score=65.27 Aligned_cols=60 Identities=20% Similarity=0.281 Sum_probs=41.9
Q ss_pred HHHHHHHHHhCCceEEEEeCCCCC-CccChHHHHHhhcCC--CCCcEEEEEcCCHHHHHHhCC
Q 047321 199 LMKQIQEYITGKKIFLVLDDVWDG-DYKKWDPFFSCLKNG--HHESKILITTHDRSVALQLGS 258 (807)
Q Consensus 199 ~~~~l~~~l~~k~~LlVlDdv~~~-~~~~~~~l~~~l~~~--~~gs~IliTTR~~~v~~~~~~ 258 (807)
..-.+.+.+..++-++++|++... |......+...+... ..|..||++|++.+.+..++.
T Consensus 136 QRV~lARAL~~~p~iLLlDEP~saLD~~~r~~l~~~l~~l~~~~~~Tii~vTHd~~ea~~~~d 198 (363)
T TIGR01186 136 QRVGLARALAAEPDILLMDEAFSALDPLIRDSMQDELKKLQATLQKTIVFITHDLDEAIRIGD 198 (363)
T ss_pred HHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCC
Confidence 344477888889999999999765 555555555555432 336779999999887665543
No 429
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=97.00 E-value=0.025 Score=60.29 Aligned_cols=95 Identities=11% Similarity=-0.004 Sum_probs=67.4
Q ss_pred hCCceEEEEeCCCCCCccChHHHHHhhcCCCCCcEEEEEcCCHH-HHHHh-CCCceEeCCCCChhhHHHHHHHHHhccCC
Q 047321 208 TGKKIFLVLDDVWDGDYKKWDPFFSCLKNGHHESKILITTHDRS-VALQL-GSIDIIPVKELGEGECWLLFKQIAFLRRS 285 (807)
Q Consensus 208 ~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~IliTTR~~~-v~~~~-~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~ 285 (807)
.+++-++|+|++..........+...+..-..++.+|++|.+.+ +...+ .-...+.+.+++.+++.+.+.... +
T Consensus 106 ~g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~lLpTIrSRCq~~~~~~~~~~~~~~~L~~~~---~- 181 (334)
T PRK07993 106 LGGAKVVWLPDAALLTDAAANALLKTLEEPPENTWFFLACREPARLLATLRSRCRLHYLAPPPEQYALTWLSREV---T- 181 (334)
T ss_pred cCCceEEEEcchHhhCHHHHHHHHHHhcCCCCCeEEEEEECChhhChHHHHhccccccCCCCCHHHHHHHHHHcc---C-
Confidence 36777999999977666777788888888777887777777643 43232 235578999999999988876431 1
Q ss_pred ccCccchHHHHHHHHHHcCCCHHHHH
Q 047321 286 FEDCEKLEPIGRKIASKCKGLPLAAK 311 (807)
Q Consensus 286 ~~~~~~~~~~~~~I~~~c~glPLai~ 311 (807)
. ..+.+..++..++|.|..+.
T Consensus 182 --~---~~~~a~~~~~la~G~~~~Al 202 (334)
T PRK07993 182 --M---SQDALLAALRLSAGAPGAAL 202 (334)
T ss_pred --C---CHHHHHHHHHHcCCCHHHHH
Confidence 1 12336788999999996543
No 430
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=96.99 E-value=0.00023 Score=82.69 Aligned_cols=112 Identities=20% Similarity=0.180 Sum_probs=77.7
Q ss_pred cCcccccccccCCCccccchhhhccccCCCCCCcccEEEEccCCCCCCCcccccCCCCccEEeeccCccccccccccccc
Q 047321 675 AFPKLKSLEIDGMKELEEWNYRITRKENISIMPRLSSLQIMNCRKLKALPDYLLQTIALQKLSIYSCDLLEELPILEDRR 754 (807)
Q Consensus 675 ~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~lp~~l~~l~~L~~L~l~~c~~l~~lP~~~~~~ 754 (807)
.||+|++|.+.+..-.... . .....+||+|..|+|+++ +++.+ .++++|++|+.|.+.+.+ ++.-+-+ ..
T Consensus 146 ~LPsL~sL~i~~~~~~~~d-F----~~lc~sFpNL~sLDIS~T-nI~nl-~GIS~LknLq~L~mrnLe-~e~~~~l--~~ 215 (699)
T KOG3665|consen 146 MLPSLRSLVISGRQFDNDD-F----SQLCASFPNLRSLDISGT-NISNL-SGISRLKNLQVLSMRNLE-FESYQDL--ID 215 (699)
T ss_pred hCcccceEEecCceecchh-H----HHHhhccCccceeecCCC-CccCc-HHHhccccHHHHhccCCC-CCchhhH--HH
Confidence 6999999999985332222 1 113358999999999999 88888 589999999999998754 2221100 24
Q ss_pred CCCCCCCCeeeeccCCCccc--CC----ccCCCCCcccccccccchhh
Q 047321 755 TTDIPRLSSLAIWYCPKLKV--LP----DYLLRTTTLQAGEQDYENEK 796 (807)
Q Consensus 755 ~~~l~~L~~L~i~~c~~l~~--lP----~~l~~l~~L~~L~l~~~~~~ 796 (807)
+-+|.+|+.|+|+.-.+... +. +.-..|++|+.||.|+..+.
T Consensus 216 LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~ 263 (699)
T KOG3665|consen 216 LFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDIN 263 (699)
T ss_pred HhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchh
Confidence 45799999999986433221 11 22245889999999986553
No 431
>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional
Probab=96.99 E-value=0.0079 Score=62.01 Aligned_cols=58 Identities=10% Similarity=0.092 Sum_probs=39.6
Q ss_pred HHHHHHHHHhCCceEEEEeCCCCC-CccChHHHHHhhcCC-CCCcEEEEEcCCHHHHHHh
Q 047321 199 LMKQIQEYITGKKIFLVLDDVWDG-DYKKWDPFFSCLKNG-HHESKILITTHDRSVALQL 256 (807)
Q Consensus 199 ~~~~l~~~l~~k~~LlVlDdv~~~-~~~~~~~l~~~l~~~-~~gs~IliTTR~~~v~~~~ 256 (807)
..-.+.+.+..++-++++|++.+. |....+.+...+... ..|..||++|++......+
T Consensus 145 qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~l~~~~~tiii~tH~~~~~~~~ 204 (255)
T PRK11231 145 QRAFLAMVLAQDTPVVLLDEPTTYLDINHQVELMRLMRELNTQGKTVVTVLHDLNQASRY 204 (255)
T ss_pred HHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHh
Confidence 344466777788899999999765 455555566655432 2467799999998765443
No 432
>PRK14241 phosphate transporter ATP-binding protein; Provisional
Probab=96.99 E-value=0.0074 Score=62.35 Aligned_cols=59 Identities=17% Similarity=0.117 Sum_probs=37.9
Q ss_pred HHHHHHHHHhCCceEEEEeCCCCC-CccChHHHHHhhcCCCCCcEEEEEcCCHHHHHHhC
Q 047321 199 LMKQIQEYITGKKIFLVLDDVWDG-DYKKWDPFFSCLKNGHHESKILITTHDRSVALQLG 257 (807)
Q Consensus 199 ~~~~l~~~l~~k~~LlVlDdv~~~-~~~~~~~l~~~l~~~~~gs~IliTTR~~~v~~~~~ 257 (807)
..-.+.+.+-.++-++++|++... |...-..+...+.....+..||++|++......+.
T Consensus 155 qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tviivsH~~~~~~~~~ 214 (258)
T PRK14241 155 QRLCIARAIAVEPDVLLMDEPCSALDPISTLAIEDLINELKQDYTIVIVTHNMQQAARVS 214 (258)
T ss_pred HHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhC
Confidence 344466777778889999999654 43333445555443333457999999987655443
No 433
>PF07693 KAP_NTPase: KAP family P-loop domain; InterPro: IPR011646 The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals. Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side [].
Probab=96.98 E-value=0.047 Score=58.58 Aligned_cols=42 Identities=19% Similarity=0.152 Sum_probs=32.6
Q ss_pred cchHHHHHHHHhCCCCCCCCCceEEEEEccCCChHHHHHHHHHcC
Q 047321 110 VDEKNELLSKLLCGSSEQQKGLDVISLVGLGGIGKTTLAQLAYNN 154 (807)
Q Consensus 110 ~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 154 (807)
+.-.+.|.+.+.... .....+|+|.|.=|+|||++.+.+...
T Consensus 2 ~~~a~~la~~I~~~~---~~~~~~IgL~G~WGsGKSs~l~~l~~~ 43 (325)
T PF07693_consen 2 KPYAKALAEIIKNPD---SDDPFVIGLYGEWGSGKSSFLNMLKEE 43 (325)
T ss_pred hHHHHHHHHHHhccC---CCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 344566777776543 257899999999999999999998763
No 434
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=96.98 E-value=0.0025 Score=71.33 Aligned_cols=90 Identities=21% Similarity=0.262 Sum_probs=61.5
Q ss_pred CCCceEEEEEccCCChHHHHHHHHHcCcccccccceEEEEEeCCCCCHHHHHHHHHHHcCCCCCCCccHHHHHHHHHHHH
Q 047321 128 QKGLDVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSNTFEEISVAKAIIEGLGVSAFGLSEFESLMKQIQEYI 207 (807)
Q Consensus 128 ~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l 207 (807)
.+.-++..++|++|+||||||..++++.. | .++=|+.|+..+...+-..|...+........
T Consensus 323 RP~kKilLL~GppGlGKTTLAHViAkqaG----Y-sVvEINASDeRt~~~v~~kI~~avq~~s~l~a------------- 384 (877)
T KOG1969|consen 323 RPPKKILLLCGPPGLGKTTLAHVIAKQAG----Y-SVVEINASDERTAPMVKEKIENAVQNHSVLDA------------- 384 (877)
T ss_pred CCccceEEeecCCCCChhHHHHHHHHhcC----c-eEEEecccccccHHHHHHHHHHHHhhcccccc-------------
Confidence 46678999999999999999999997432 2 25667788887777666666555543322111
Q ss_pred hCCceEEEEeCCCCCCccChHHHHHhhc
Q 047321 208 TGKKIFLVLDDVWDGDYKKWDPFFSCLK 235 (807)
Q Consensus 208 ~~k~~LlVlDdv~~~~~~~~~~l~~~l~ 235 (807)
.+++.-||+|+++.......+.+...+.
T Consensus 385 dsrP~CLViDEIDGa~~~~Vdvilslv~ 412 (877)
T KOG1969|consen 385 DSRPVCLVIDEIDGAPRAAVDVILSLVK 412 (877)
T ss_pred CCCcceEEEecccCCcHHHHHHHHHHHH
Confidence 2578889999997665444455555544
No 435
>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional
Probab=96.98 E-value=0.0068 Score=63.00 Aligned_cols=58 Identities=22% Similarity=0.188 Sum_probs=38.2
Q ss_pred HHHHHHHHhCCceEEEEeCCCCC-CccChHHHHHhhcCCCCCcEEEEEcCCHHHHHHhC
Q 047321 200 MKQIQEYITGKKIFLVLDDVWDG-DYKKWDPFFSCLKNGHHESKILITTHDRSVALQLG 257 (807)
Q Consensus 200 ~~~l~~~l~~k~~LlVlDdv~~~-~~~~~~~l~~~l~~~~~gs~IliTTR~~~v~~~~~ 257 (807)
.-.+.+.+..++-+++||++... |...-+.+...+.....+..||++|++...+....
T Consensus 172 rl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~~~~~~ 230 (268)
T PRK14248 172 RLCIARTLAMKPAVLLLDEPASALDPISNAKIEELITELKEEYSIIIVTHNMQQALRVS 230 (268)
T ss_pred HHHHHHHHhCCCCEEEEcCCCcccCHHHHHHHHHHHHHHhcCCEEEEEEeCHHHHHHhC
Confidence 33466677778889999999765 44444445555544333567999999987655443
No 436
>PRK12608 transcription termination factor Rho; Provisional
Probab=96.98 E-value=0.0051 Score=65.26 Aligned_cols=102 Identities=17% Similarity=0.122 Sum_probs=65.9
Q ss_pred hHHHHHHHHhCCCCCCCCCceEEEEEccCCChHHHHHHHHHcCccccc-ccce-EEEEEeCC-CCCHHHHHHHHHHHcCC
Q 047321 112 EKNELLSKLLCGSSEQQKGLDVISLVGLGGIGKTTLAQLAYNNDEVKR-NFEK-VIWVCVSN-TFEEISVAKAIIEGLGV 188 (807)
Q Consensus 112 ~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~-~f~~-~~wv~~~~-~~~~~~~~~~i~~~l~~ 188 (807)
-..++++.+..-. .-..+.|+|..|+|||||++.+++. +.. +-+. .+|+.+.+ ..++.++.+.+...+..
T Consensus 119 ~~~RvID~l~PiG-----kGQR~LIvG~pGtGKTTLl~~la~~--i~~~~~dv~~vv~lIgER~~EV~df~~~i~~~Vva 191 (380)
T PRK12608 119 LSMRVVDLVAPIG-----KGQRGLIVAPPRAGKTVLLQQIAAA--VAANHPEVHLMVLLIDERPEEVTDMRRSVKGEVYA 191 (380)
T ss_pred hhHhhhhheeecC-----CCceEEEECCCCCCHHHHHHHHHHH--HHhcCCCceEEEEEecCCCCCHHHHHHHHhhhEEe
Confidence 4456888887532 3456799999999999999998873 322 2233 35666655 45678888888877765
Q ss_pred CCCCCccHH-----HHHHHHHHHH--hCCceEEEEeCCC
Q 047321 189 SAFGLSEFE-----SLMKQIQEYI--TGKKIFLVLDDVW 220 (807)
Q Consensus 189 ~~~~~~~~~-----~~~~~l~~~l--~~k~~LlVlDdv~ 220 (807)
...+..... .....+.+++ .|++.+||+|++.
T Consensus 192 st~de~~~~~~~v~~~~~~~Ae~f~~~GkdVVLvlDslt 230 (380)
T PRK12608 192 STFDRPPDEHIRVAELVLERAKRLVEQGKDVVILLDSLT 230 (380)
T ss_pred ecCCCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEEeCcH
Confidence 543322211 1122233333 5899999999983
No 437
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=96.97 E-value=0.0049 Score=71.95 Aligned_cols=57 Identities=16% Similarity=0.144 Sum_probs=38.7
Q ss_pred HHHHHHHHHhCCceEEEEeCCCCC-CccChHHHHHhhcCCCCCcEEEEEcCCHHHHHH
Q 047321 199 LMKQIQEYITGKKIFLVLDDVWDG-DYKKWDPFFSCLKNGHHESKILITTHDRSVALQ 255 (807)
Q Consensus 199 ~~~~l~~~l~~k~~LlVlDdv~~~-~~~~~~~l~~~l~~~~~gs~IliTTR~~~v~~~ 255 (807)
..-.+.+.+-.++-++|||+..+. |.+.-..+...+.....+..+|++||+......
T Consensus 487 QRi~LARall~~~~ililDEptsaLD~~t~~~i~~~l~~~~~~~tvI~VtHr~~~~~~ 544 (582)
T PRK11176 487 QRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLSTIEK 544 (582)
T ss_pred HHHHHHHHHHhCCCEEEEECccccCCHHHHHHHHHHHHHHhCCCEEEEEecchHHHHh
Confidence 334466777778889999999765 444444566666555456678888888766554
No 438
>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=96.97 E-value=0.0066 Score=70.50 Aligned_cols=56 Identities=20% Similarity=0.211 Sum_probs=38.5
Q ss_pred HHHHHHHHhCCceEEEEeCCCCC-CccChHHHHHhhcCCCCCcEEEEEcCCHHHHHH
Q 047321 200 MKQIQEYITGKKIFLVLDDVWDG-DYKKWDPFFSCLKNGHHESKILITTHDRSVALQ 255 (807)
Q Consensus 200 ~~~l~~~l~~k~~LlVlDdv~~~-~~~~~~~l~~~l~~~~~gs~IliTTR~~~v~~~ 255 (807)
.-.+.+.+-.++-+++||+.... |.+.-+.+...+....++..+|++|+.......
T Consensus 483 RialARall~~~~ililDE~ts~lD~~t~~~i~~~l~~~~~~~tviiitHr~~~~~~ 539 (574)
T PRK11160 483 RLGIARALLHDAPLLLLDEPTEGLDAETERQILELLAEHAQNKTVLMITHRLTGLEQ 539 (574)
T ss_pred HHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEecChhHHHh
Confidence 34467777778899999999765 555555677777655556677777777655443
No 439
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=96.97 E-value=0.0072 Score=70.68 Aligned_cols=63 Identities=16% Similarity=0.100 Sum_probs=41.0
Q ss_pred HHHHHHHHhCCceEEEEeCCCCC-CccChHHHHHhhcCCCCCcEEEEEcCCHHHHHHhCCCceEeC
Q 047321 200 MKQIQEYITGKKIFLVLDDVWDG-DYKKWDPFFSCLKNGHHESKILITTHDRSVALQLGSIDIIPV 264 (807)
Q Consensus 200 ~~~l~~~l~~k~~LlVlDdv~~~-~~~~~~~l~~~l~~~~~gs~IliTTR~~~v~~~~~~~~~~~l 264 (807)
.-.+.+.+-.++-+++||++.+. |.+.-..+...+....++..+|++|+....... .++++.+
T Consensus 493 RialARAll~~~~IliLDE~TSaLD~~te~~i~~~l~~~~~~~TvIiItHrl~~i~~--aD~Iivl 556 (588)
T PRK11174 493 RLALARALLQPCQLLLLDEPTASLDAHSEQLVMQALNAASRRQTTLMVTHQLEDLAQ--WDQIWVM 556 (588)
T ss_pred HHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHhCCCEEEEEecChHHHHh--CCEEEEE
Confidence 33467777778899999999765 555555666666655455567777777655443 2344554
No 440
>cd03288 ABCC_SUR2 The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=96.97 E-value=0.0085 Score=61.83 Aligned_cols=59 Identities=12% Similarity=0.175 Sum_probs=40.4
Q ss_pred HHHHHHHHHHHhCCceEEEEeCCCCC-CccChHHHHHhhcCCCCCcEEEEEcCCHHHHHH
Q 047321 197 ESLMKQIQEYITGKKIFLVLDDVWDG-DYKKWDPFFSCLKNGHHESKILITTHDRSVALQ 255 (807)
Q Consensus 197 ~~~~~~l~~~l~~k~~LlVlDdv~~~-~~~~~~~l~~~l~~~~~gs~IliTTR~~~v~~~ 255 (807)
+...-.+.+.+-.++-++++|++... |...-+.+...+.....+..||++|++......
T Consensus 161 ~~qrl~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~~~~~~tiii~sh~~~~~~~ 220 (257)
T cd03288 161 QRQLFCLARAFVRKSSILIMDEATASIDMATENILQKVVMTAFADRTVVTIAHRVSTILD 220 (257)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHhcCCCEEEEEecChHHHHh
Confidence 44445577778888999999999664 433344455555543456789999999887654
No 441
>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]
Probab=96.97 E-value=0.0029 Score=66.32 Aligned_cols=122 Identities=20% Similarity=0.328 Sum_probs=71.6
Q ss_pred CceEEEEEccCCChHHHHHHHHHcC-----cccccccceEE-EEEe------CCCCCHHHHH-----------HHHHHHc
Q 047321 130 GLDVISLVGLGGIGKTTLAQLAYNN-----DEVKRNFEKVI-WVCV------SNTFEEISVA-----------KAIIEGL 186 (807)
Q Consensus 130 ~~~vi~I~G~gGiGKTtLa~~v~~~-----~~~~~~f~~~~-wv~~------~~~~~~~~~~-----------~~i~~~l 186 (807)
--+.|+|||++|+||+||.+.+... -..+.+-..++ |++- ....+..+.+ +.-+..+
T Consensus 612 mdSRiaIVGPNGVGKSTlLkLL~Gkl~P~~GE~RKnhrL~iG~FdQh~~E~L~~Eetp~EyLqr~FNlpyq~ARK~LG~f 691 (807)
T KOG0066|consen 612 MDSRIAIVGPNGVGKSTLLKLLIGKLDPNDGELRKNHRLRIGWFDQHANEALNGEETPVEYLQRKFNLPYQEARKQLGTF 691 (807)
T ss_pred ccceeEEECCCCccHHHHHHHHhcCCCCCcchhhccceeeeechhhhhHHhhccccCHHHHHHHhcCCChHHHHHHhhhh
Confidence 4568999999999999999998652 22333333333 6541 1111222221 1122222
Q ss_pred CCCC-------CCCccHHHHHHHHHHHHhCCceEEEEeCCCCC-CccChHHHHHhhcCCCCCcEEEEEcCCHHHH
Q 047321 187 GVSA-------FGLSEFESLMKQIQEYITGKKIFLVLDDVWDG-DYKKWDPFFSCLKNGHHESKILITTHDRSVA 253 (807)
Q Consensus 187 ~~~~-------~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~-~~~~~~~l~~~l~~~~~gs~IliTTR~~~v~ 253 (807)
+... .+..........+.+..-+.+-+||||+..+. +.+..+.+...+.....| |||.|+++...
T Consensus 692 GL~sHAHTikikdLSGGQKaRValaeLal~~PDvlILDEPTNNLDIESIDALaEAIney~Gg--Vi~VsHDeRLi 764 (807)
T KOG0066|consen 692 GLASHAHTIKIKDLSGGQKARVALAELALGGPDVLILDEPTNNLDIESIDALAEAINEYNGG--VIMVSHDERLI 764 (807)
T ss_pred hhhhccceEeeeecCCcchHHHHHHHHhcCCCCEEEecCCCCCcchhhHHHHHHHHHhccCc--EEEEeccccee
Confidence 2211 12222333344566666788899999998765 666777777777765433 77888887654
No 442
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=96.96 E-value=0.0018 Score=63.12 Aligned_cols=132 Identities=23% Similarity=0.281 Sum_probs=64.6
Q ss_pred cccchHHHHHHHHhCCCCCCCCCceEEEEEccCCChHHHHHHHHHcCcccccccceEEEEEeCCC------CCHHH----
Q 047321 108 GRVDEKNELLSKLLCGSSEQQKGLDVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSNT------FEEIS---- 177 (807)
Q Consensus 108 GR~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~------~~~~~---- 177 (807)
.+..+-...++.|. ...++.+.|++|.|||.||....-+.-..+.|+.++++.-.-. |-+-.
T Consensus 4 p~~~~Q~~~~~al~--------~~~~v~~~G~AGTGKT~LA~a~Al~~v~~g~~~kiii~Rp~v~~~~~lGflpG~~~eK 75 (205)
T PF02562_consen 4 PKNEEQKFALDALL--------NNDLVIVNGPAGTGKTFLALAAALELVKEGEYDKIIITRPPVEAGEDLGFLPGDLEEK 75 (205)
T ss_dssp --SHHHHHHHHHHH--------H-SEEEEE--TTSSTTHHHHHHHHHHHHTTS-SEEEEEE-S--TT----SS-------
T ss_pred CCCHHHHHHHHHHH--------hCCeEEEECCCCCcHHHHHHHHHHHHHHhCCCcEEEEEecCCCCccccccCCCCHHHH
Confidence 45556667777776 3459999999999999999887765444577887777642111 10000
Q ss_pred ---HHHHHHHHcCCCCCCCccHHHHHHH------HHHHHhCC---ceEEEEeCCCCCCccChHHHHHhhcCCCCCcEEEE
Q 047321 178 ---VAKAIIEGLGVSAFGLSEFESLMKQ------IQEYITGK---KIFLVLDDVWDGDYKKWDPFFSCLKNGHHESKILI 245 (807)
Q Consensus 178 ---~~~~i~~~l~~~~~~~~~~~~~~~~------l~~~l~~k---~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~Ili 245 (807)
.+.-+...+..-. +....+.+... --.+++|+ ..++|+|++.+-... ++...+...+.|||||+
T Consensus 76 ~~p~~~p~~d~l~~~~-~~~~~~~~~~~~~Ie~~~~~~iRGrt~~~~~iIvDEaQN~t~~---~~k~ilTR~g~~skii~ 151 (205)
T PF02562_consen 76 MEPYLRPIYDALEELF-GKEKLEELIQNGKIEIEPLAFIRGRTFDNAFIIVDEAQNLTPE---ELKMILTRIGEGSKIII 151 (205)
T ss_dssp --TTTHHHHHHHTTTS--TTCHHHHHHTTSEEEEEGGGGTT--B-SEEEEE-SGGG--HH---HHHHHHTTB-TT-EEEE
T ss_pred HHHHHHHHHHHHHHHh-ChHhHHHHhhcCeEEEEehhhhcCccccceEEEEecccCCCHH---HHHHHHcccCCCcEEEE
Confidence 1111222221110 11222222211 01234554 459999999765443 45555666788999999
Q ss_pred EcCCHH
Q 047321 246 TTHDRS 251 (807)
Q Consensus 246 TTR~~~ 251 (807)
+--..+
T Consensus 152 ~GD~~Q 157 (205)
T PF02562_consen 152 TGDPSQ 157 (205)
T ss_dssp EE----
T ss_pred ecCcee
Confidence 976543
No 443
>PRK14252 phosphate ABC transporter ATP-binding protein; Provisional
Probab=96.96 E-value=0.01 Score=61.62 Aligned_cols=58 Identities=17% Similarity=0.152 Sum_probs=39.2
Q ss_pred HHHHHHHHhCCceEEEEeCCCCC-CccChHHHHHhhcCCCCCcEEEEEcCCHHHHHHhC
Q 047321 200 MKQIQEYITGKKIFLVLDDVWDG-DYKKWDPFFSCLKNGHHESKILITTHDRSVALQLG 257 (807)
Q Consensus 200 ~~~l~~~l~~k~~LlVlDdv~~~-~~~~~~~l~~~l~~~~~gs~IliTTR~~~v~~~~~ 257 (807)
.-.+.+.+..++-++++|++... |....+.+...+.....+..||++|++.+......
T Consensus 169 rv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~tiiivth~~~~~~~~~ 227 (265)
T PRK14252 169 RLCIARALATDPEILLFDEPTSALDPIATASIEELISDLKNKVTILIVTHNMQQAARVS 227 (265)
T ss_pred HHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCEEEEEecCHHHHHHhC
Confidence 34466777778889999999664 44445555555554334567999999987665433
No 444
>PRK14236 phosphate transporter ATP-binding protein; Provisional
Probab=96.96 E-value=0.01 Score=61.87 Aligned_cols=58 Identities=19% Similarity=0.086 Sum_probs=39.2
Q ss_pred HHHHHHHHHhCCceEEEEeCCCCC-CccChHHHHHhhcCCCCCcEEEEEcCCHHHHHHh
Q 047321 199 LMKQIQEYITGKKIFLVLDDVWDG-DYKKWDPFFSCLKNGHHESKILITTHDRSVALQL 256 (807)
Q Consensus 199 ~~~~l~~~l~~k~~LlVlDdv~~~-~~~~~~~l~~~l~~~~~gs~IliTTR~~~v~~~~ 256 (807)
..-.+.+.+-.++-++++|+.... |......+...+.....+..||++|++.+.+...
T Consensus 175 qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~~~tiiivtH~~~~~~~~ 233 (272)
T PRK14236 175 QRLVIARAIAIEPEVLLLDEPTSALDPISTLKIEELITELKSKYTIVIVTHNMQQAARV 233 (272)
T ss_pred HHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCeEEEEeCCHHHHHhh
Confidence 344466777788899999999765 4444455555555433356799999998765543
No 445
>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Probab=96.95 E-value=0.009 Score=68.85 Aligned_cols=57 Identities=16% Similarity=0.122 Sum_probs=40.1
Q ss_pred HHHHHHHHHhCCceEEEEeCCCCC-CccChHHHHHhhcCCCCCcEEEEEcCCHHHHHH
Q 047321 199 LMKQIQEYITGKKIFLVLDDVWDG-DYKKWDPFFSCLKNGHHESKILITTHDRSVALQ 255 (807)
Q Consensus 199 ~~~~l~~~l~~k~~LlVlDdv~~~-~~~~~~~l~~~l~~~~~gs~IliTTR~~~v~~~ 255 (807)
..-.+.+.+-.++-+++||++.+. |.+....+...+.....+..+|++|++......
T Consensus 465 qri~laRal~~~~~ililDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~ 522 (529)
T TIGR02857 465 QRLALARAFLRDAPLLLLDEPTAHLDAETEALVTEALRALAQGRTVLLVTHRLALAER 522 (529)
T ss_pred HHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHHh
Confidence 334466777778899999999765 555666676777655566778888888766543
No 446
>PRK14243 phosphate transporter ATP-binding protein; Provisional
Probab=96.95 E-value=0.0091 Score=61.88 Aligned_cols=58 Identities=16% Similarity=0.115 Sum_probs=37.6
Q ss_pred HHHHHHHHhCCceEEEEeCCCCC-CccChHHHHHhhcCCCCCcEEEEEcCCHHHHHHhC
Q 047321 200 MKQIQEYITGKKIFLVLDDVWDG-DYKKWDPFFSCLKNGHHESKILITTHDRSVALQLG 257 (807)
Q Consensus 200 ~~~l~~~l~~k~~LlVlDdv~~~-~~~~~~~l~~~l~~~~~gs~IliTTR~~~v~~~~~ 257 (807)
.-.+.+.+-.++-+++||++... |...-+.+...+.....+..||++|++.+....+.
T Consensus 159 rv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tvi~vtH~~~~~~~~~ 217 (264)
T PRK14243 159 RLCIARAIAVQPEVILMDEPCSALDPISTLRIEELMHELKEQYTIIIVTHNMQQAARVS 217 (264)
T ss_pred HHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhC
Confidence 34466667778889999999664 44444445555543333457999999987665544
No 447
>PRK05541 adenylylsulfate kinase; Provisional
Probab=96.95 E-value=0.0057 Score=59.06 Aligned_cols=36 Identities=39% Similarity=0.623 Sum_probs=28.0
Q ss_pred CceEEEEEccCCChHHHHHHHHHcCcccccccceEEEE
Q 047321 130 GLDVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWV 167 (807)
Q Consensus 130 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv 167 (807)
...+|.|.|+.|+||||+|+.++. .....+...+++
T Consensus 6 ~~~~I~i~G~~GsGKst~a~~l~~--~l~~~~~~~~~~ 41 (176)
T PRK05541 6 NGYVIWITGLAGSGKTTIAKALYE--RLKLKYSNVIYL 41 (176)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHH--HHHHcCCcEEEE
Confidence 557999999999999999999987 444445555554
No 448
>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional
Probab=96.95 E-value=0.0083 Score=61.68 Aligned_cols=58 Identities=19% Similarity=0.097 Sum_probs=38.3
Q ss_pred HHHHHHHHhCCceEEEEeCCCCC-CccChHHHHHhhcCCCCCcEEEEEcCCHHHHHHhC
Q 047321 200 MKQIQEYITGKKIFLVLDDVWDG-DYKKWDPFFSCLKNGHHESKILITTHDRSVALQLG 257 (807)
Q Consensus 200 ~~~l~~~l~~k~~LlVlDdv~~~-~~~~~~~l~~~l~~~~~gs~IliTTR~~~v~~~~~ 257 (807)
.-.+.+.+..++-++++|++.+. |......+...+.....+..||++|++.+....+.
T Consensus 155 rv~laral~~~p~llllDEP~~~LD~~~~~~l~~~L~~~~~~~tiiivsH~~~~~~~~~ 213 (251)
T PRK14270 155 RLCIARTIAVKPDVILMDEPTSALDPISTLKIEDLMVELKKEYTIVIVTHNMQQASRVS 213 (251)
T ss_pred HHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCeEEEEEcCHHHHHHhc
Confidence 34466667778889999999765 44444555555544333456999999987655443
No 449
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=96.95 E-value=0.0073 Score=72.00 Aligned_cols=57 Identities=18% Similarity=0.158 Sum_probs=39.4
Q ss_pred HHHHHHHHHhCCceEEEEeCCCCC-CccChHHHHHhhcCCCCCcEEEEEcCCHHHHHH
Q 047321 199 LMKQIQEYITGKKIFLVLDDVWDG-DYKKWDPFFSCLKNGHHESKILITTHDRSVALQ 255 (807)
Q Consensus 199 ~~~~l~~~l~~k~~LlVlDdv~~~-~~~~~~~l~~~l~~~~~gs~IliTTR~~~v~~~ 255 (807)
..-.+.+.+-.++-+++||++.+. |.+.-..+...+....++..+|++||+......
T Consensus 608 QRlalARall~~p~iliLDE~Ts~LD~~te~~i~~~l~~~~~~~T~iiItHrl~~~~~ 665 (694)
T TIGR03375 608 QAVALARALLRDPPILLLDEPTSAMDNRSEERFKDRLKRWLAGKTLVLVTHRTSLLDL 665 (694)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHh
Confidence 334466777778899999999765 555555566666655556678888887776544
No 450
>PRK14240 phosphate transporter ATP-binding protein; Provisional
Probab=96.94 E-value=0.0085 Score=61.59 Aligned_cols=58 Identities=16% Similarity=0.107 Sum_probs=38.6
Q ss_pred HHHHHHHHhCCceEEEEeCCCCC-CccChHHHHHhhcCCCCCcEEEEEcCCHHHHHHhC
Q 047321 200 MKQIQEYITGKKIFLVLDDVWDG-DYKKWDPFFSCLKNGHHESKILITTHDRSVALQLG 257 (807)
Q Consensus 200 ~~~l~~~l~~k~~LlVlDdv~~~-~~~~~~~l~~~l~~~~~gs~IliTTR~~~v~~~~~ 257 (807)
.-.+.+.+-.++-++++|++... |...-..+...+.....+..||++|++.+....+.
T Consensus 154 rv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~ 212 (250)
T PRK14240 154 RLCIARALAVEPEVLLMDEPTSALDPISTLKIEELIQELKKDYTIVIVTHNMQQASRIS 212 (250)
T ss_pred HHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEEeCHHHHHhhC
Confidence 44466777778889999999664 44444445555544334667999999987655443
No 451
>PRK14260 phosphate ABC transporter ATP-binding protein; Provisional
Probab=96.94 E-value=0.0091 Score=61.69 Aligned_cols=61 Identities=18% Similarity=0.100 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHhCCceEEEEeCCCCC-CccChHHHHHhhcCCCCCcEEEEEcCCHHHHHHhC
Q 047321 197 ESLMKQIQEYITGKKIFLVLDDVWDG-DYKKWDPFFSCLKNGHHESKILITTHDRSVALQLG 257 (807)
Q Consensus 197 ~~~~~~l~~~l~~k~~LlVlDdv~~~-~~~~~~~l~~~l~~~~~gs~IliTTR~~~v~~~~~ 257 (807)
+...-.+.+.+..++-+++||++... |...-..+...+.....+..||++|++.+....+.
T Consensus 155 ~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~i~~~~ 216 (259)
T PRK14260 155 QQQRLCIARALAIKPKVLLMDEPCSALDPIATMKVEELIHSLRSELTIAIVTHNMQQATRVS 216 (259)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhc
Confidence 33344567777788889999999764 43344445555543333457889999887665544
No 452
>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE. This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.
Probab=96.94 E-value=0.0079 Score=62.38 Aligned_cols=60 Identities=18% Similarity=0.183 Sum_probs=40.0
Q ss_pred HHHHHHHHHHHhCCceEEEEeCCCCC-CccChHHHHHhhcCC--CCCcEEEEEcCCHHHHHHh
Q 047321 197 ESLMKQIQEYITGKKIFLVLDDVWDG-DYKKWDPFFSCLKNG--HHESKILITTHDRSVALQL 256 (807)
Q Consensus 197 ~~~~~~l~~~l~~k~~LlVlDdv~~~-~~~~~~~l~~~l~~~--~~gs~IliTTR~~~v~~~~ 256 (807)
+...-.+.+.+-.++-+++||++... |....+.+...+... ..|..||++|++...+..+
T Consensus 155 e~qrv~laral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~~~~~~ 217 (265)
T TIGR02769 155 QLQRINIARALAVKPKLIVLDEAVSNLDMVLQAVILELLRKLQQAFGTAYLFITHDLRLVQSF 217 (265)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHH
Confidence 33344567777788889999999664 444444455555433 2367799999998776543
No 453
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=96.94 E-value=0.0059 Score=73.14 Aligned_cols=51 Identities=24% Similarity=0.274 Sum_probs=38.0
Q ss_pred CccccccchHHHHHHHHhCCCCCCCCCceEEEEEccCCChHHHHHHHHHcC
Q 047321 104 GGVCGRVDEKNELLSKLLCGSSEQQKGLDVISLVGLGGIGKTTLAQLAYNN 154 (807)
Q Consensus 104 ~~~vGR~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 154 (807)
.+++|.++.++++.+++...........+++.++|++|+|||++|+.+++.
T Consensus 320 ~~~~G~~~~k~~i~~~~~~~~~~~~~~~~~lll~GppG~GKT~lAk~iA~~ 370 (775)
T TIGR00763 320 EDHYGLKKVKERILEYLAVQKLRGKMKGPILCLVGPPGVGKTSLGKSIAKA 370 (775)
T ss_pred hhcCChHHHHHHHHHHHHHHHhhcCCCCceEEEECCCCCCHHHHHHHHHHH
Confidence 358899999999888764321111224458999999999999999999973
No 454
>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=96.94 E-value=0.012 Score=62.73 Aligned_cols=60 Identities=15% Similarity=0.186 Sum_probs=40.1
Q ss_pred HHHHHHHHHHHHhCCceEEEEeCCCCC-CccChHHHHHhhcCC-CCCcEEEEEcCCHHHHHH
Q 047321 196 FESLMKQIQEYITGKKIFLVLDDVWDG-DYKKWDPFFSCLKNG-HHESKILITTHDRSVALQ 255 (807)
Q Consensus 196 ~~~~~~~l~~~l~~k~~LlVlDdv~~~-~~~~~~~l~~~l~~~-~~gs~IliTTR~~~v~~~ 255 (807)
.+...-.+.+.+..++-+++||++... |...-..+...+... ..|..||++|++.+.+..
T Consensus 180 GqkqRvaiAraL~~~p~iLLLDEPtsgLD~~~~~~l~~~L~~l~~~g~TiiivtHd~~~~~~ 241 (320)
T PRK13631 180 GQKRRVAIAGILAIQPEILIFDEPTAGLDPKGEHEMMQLILDAKANNKTVFVITHTMEHVLE 241 (320)
T ss_pred HHHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHH
Confidence 344455577888889999999999765 444444455554432 246789999999875543
No 455
>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=96.93 E-value=0.0064 Score=63.82 Aligned_cols=61 Identities=15% Similarity=0.174 Sum_probs=41.1
Q ss_pred HHHHHHHHHHHhCCceEEEEeCCCCC-CccChHHHHHhhcCC-CCCcEEEEEcCCHHHHHHhC
Q 047321 197 ESLMKQIQEYITGKKIFLVLDDVWDG-DYKKWDPFFSCLKNG-HHESKILITTHDRSVALQLG 257 (807)
Q Consensus 197 ~~~~~~l~~~l~~k~~LlVlDdv~~~-~~~~~~~l~~~l~~~-~~gs~IliTTR~~~v~~~~~ 257 (807)
....-.+.+.+..++-+|+||++... |...-..+...+... ..|..||++|++.+.+....
T Consensus 150 q~qrl~laral~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~~g~tvlivsH~~~~~~~~~ 212 (287)
T PRK13641 150 QMRRVAIAGVMAYEPEILCLDEPAAGLDPEGRKEMMQLFKDYQKAGHTVILVTHNMDDVAEYA 212 (287)
T ss_pred HHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhC
Confidence 33344577778888999999999765 444444455555432 34788999999988665543
No 456
>PRK14254 phosphate ABC transporter ATP-binding protein; Provisional
Probab=96.93 E-value=0.0089 Score=62.61 Aligned_cols=62 Identities=15% Similarity=0.130 Sum_probs=40.5
Q ss_pred HHHHHHHHHHHhCCceEEEEeCCCCC-CccChHHHHHhhcCCCCCcEEEEEcCCHHHHHHhCC
Q 047321 197 ESLMKQIQEYITGKKIFLVLDDVWDG-DYKKWDPFFSCLKNGHHESKILITTHDRSVALQLGS 258 (807)
Q Consensus 197 ~~~~~~l~~~l~~k~~LlVlDdv~~~-~~~~~~~l~~~l~~~~~gs~IliTTR~~~v~~~~~~ 258 (807)
+...-.+.+.+..++-+|+||+.... |...-..+...+.....+..||++|++.+.+..+..
T Consensus 185 e~qrv~LAraL~~~p~lLLLDEPts~LD~~~~~~l~~~L~~~~~~~tiii~tH~~~~i~~~~d 247 (285)
T PRK14254 185 QQQRLCIARAIAPDPEVILMDEPASALDPVATSKIEDLIEELAEEYTVVIVTHNMQQAARISD 247 (285)
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhcC
Confidence 33444567777888899999999765 444444455555443223469999999887655443
No 457
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=96.92 E-value=0.0065 Score=63.72 Aligned_cols=60 Identities=18% Similarity=0.205 Sum_probs=41.1
Q ss_pred HHHHHHHHHHHhCCceEEEEeCCCCC-CccChHHHHHhhcCC--CCCcEEEEEcCCHHHHHHh
Q 047321 197 ESLMKQIQEYITGKKIFLVLDDVWDG-DYKKWDPFFSCLKNG--HHESKILITTHDRSVALQL 256 (807)
Q Consensus 197 ~~~~~~l~~~l~~k~~LlVlDdv~~~-~~~~~~~l~~~l~~~--~~gs~IliTTR~~~v~~~~ 256 (807)
+...-.+.+.+..++-+++||++... |...-..+...+... ..|..||++|++.+.+..+
T Consensus 150 q~qrv~laraL~~~p~illlDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvl~vtH~~~~~~~~ 212 (286)
T PRK13646 150 QMRKIAIVSILAMNPDIIVLDEPTAGLDPQSKRQVMRLLKSLQTDENKTIILVSHDMNEVARY 212 (286)
T ss_pred HHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHh
Confidence 33445577788889999999999765 444444455555542 3477899999998765444
No 458
>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional
Probab=96.91 E-value=0.0084 Score=61.72 Aligned_cols=58 Identities=17% Similarity=0.121 Sum_probs=37.4
Q ss_pred HHHHHHHHhCCceEEEEeCCCCC-CccChHHHHHhhcCCCCCcEEEEEcCCHHHHHHhC
Q 047321 200 MKQIQEYITGKKIFLVLDDVWDG-DYKKWDPFFSCLKNGHHESKILITTHDRSVALQLG 257 (807)
Q Consensus 200 ~~~l~~~l~~k~~LlVlDdv~~~-~~~~~~~l~~~l~~~~~gs~IliTTR~~~v~~~~~ 257 (807)
.-.+.+.+-.++-++++|++.+. |...-..+...+.....+..||++|++.+......
T Consensus 156 rv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~vsH~~~~~~~~~ 214 (252)
T PRK14255 156 RVCIARVLAVKPDVILLDEPTSALDPISSTQIENMLLELRDQYTIILVTHSMHQASRIS 214 (252)
T ss_pred HHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHhCCEEEEEECCHHHHHHhC
Confidence 34466777788889999999664 43344445555543333456888999887665433
No 459
>PRK03695 vitamin B12-transporter ATPase; Provisional
Probab=96.91 E-value=0.0094 Score=61.11 Aligned_cols=58 Identities=14% Similarity=0.198 Sum_probs=37.3
Q ss_pred HHHHHHHHHhC-------CceEEEEeCCCCC-CccChHHHHHhhcCC-CCCcEEEEEcCCHHHHHHh
Q 047321 199 LMKQIQEYITG-------KKIFLVLDDVWDG-DYKKWDPFFSCLKNG-HHESKILITTHDRSVALQL 256 (807)
Q Consensus 199 ~~~~l~~~l~~-------k~~LlVlDdv~~~-~~~~~~~l~~~l~~~-~~gs~IliTTR~~~v~~~~ 256 (807)
..-.+.+.+.. ++-++++|++... |......+...+... ..|..||++|++.+....+
T Consensus 133 qrv~la~al~~~~~~~~p~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~~tvi~~sH~~~~~~~~ 199 (248)
T PRK03695 133 QRVRLAAVVLQVWPDINPAGQLLLLDEPMNSLDVAQQAALDRLLSELCQQGIAVVMSSHDLNHTLRH 199 (248)
T ss_pred HHHHHHHHHhccccccCCCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHh
Confidence 33445566654 5589999999765 444445555555433 2467899999998755443
No 460
>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=96.91 E-value=0.0042 Score=68.58 Aligned_cols=128 Identities=20% Similarity=0.219 Sum_probs=76.2
Q ss_pred CceEEEEEccCCChHHHHHHHHHcCcc------------c-----ccccceEEEEEeCCCC---------------CHHH
Q 047321 130 GLDVISLVGLGGIGKTTLAQLAYNNDE------------V-----KRNFEKVIWVCVSNTF---------------EEIS 177 (807)
Q Consensus 130 ~~~vi~I~G~gGiGKTtLa~~v~~~~~------------~-----~~~f~~~~wv~~~~~~---------------~~~~ 177 (807)
.-+.++|+|.+|+|||||+..+..-.. . ...+..+.||.-.... ..++
T Consensus 346 ~g~~talvG~SGaGKSTLl~lL~G~~~~~~G~I~vng~~l~~l~~~~~~k~i~~v~Q~p~lf~gTireNi~l~~~~~s~e 425 (559)
T COG4988 346 AGQLTALVGASGAGKSTLLNLLLGFLAPTQGEIRVNGIDLRDLSPEAWRKQISWVSQNPYLFAGTIRENILLARPDASDE 425 (559)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCcCCCCCceEEECCccccccCHHHHHhHeeeeCCCCccccccHHHHhhccCCcCCHH
Confidence 567899999999999999999843111 1 1223456787532221 1122
Q ss_pred HHHHHHHHcCCCC----------------CCCccHHHHHHHHHHHHhCCceEEEEeCCCCC-CccChHHHHHhhcCCCCC
Q 047321 178 VAKAIIEGLGVSA----------------FGLSEFESLMKQIQEYITGKKIFLVLDDVWDG-DYKKWDPFFSCLKNGHHE 240 (807)
Q Consensus 178 ~~~~i~~~l~~~~----------------~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~-~~~~~~~l~~~l~~~~~g 240 (807)
-..+.+++.+... .+....+...-.+.+.+-.++-++++|+.... |.+.-..+...+.....+
T Consensus 426 ~i~~al~~a~l~~~v~~p~GLdt~ige~G~~LSgGQ~QRlaLARAll~~~~l~llDEpTA~LD~etE~~i~~~l~~l~~~ 505 (559)
T COG4988 426 EIIAALDQAGLLEFVPKPDGLDTVIGEGGAGLSGGQAQRLALARALLSPASLLLLDEPTAHLDAETEQIILQALQELAKQ 505 (559)
T ss_pred HHHHHHHHhcHHHhhcCCCcccchhccCCCCCCHHHHHHHHHHHHhcCCCCEEEecCCccCCCHhHHHHHHHHHHHHHhC
Confidence 2223333332210 11122233344577788888999999999665 444444466666666666
Q ss_pred cEEEEEcCCHHHHHHhC
Q 047321 241 SKILITTHDRSVALQLG 257 (807)
Q Consensus 241 s~IliTTR~~~v~~~~~ 257 (807)
..+|+.|+....+..++
T Consensus 506 ktvl~itHrl~~~~~~D 522 (559)
T COG4988 506 KTVLVITHRLEDAADAD 522 (559)
T ss_pred CeEEEEEcChHHHhcCC
Confidence 77888888887766554
No 461
>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA. This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.
Probab=96.91 E-value=0.0066 Score=70.77 Aligned_cols=66 Identities=15% Similarity=0.111 Sum_probs=44.5
Q ss_pred HHHHHHHHHHHhCCceEEEEeCCCCC-CccChHHHHHhhcCCCCCcEEEEEcCCHHHHHHhCCCceEeC
Q 047321 197 ESLMKQIQEYITGKKIFLVLDDVWDG-DYKKWDPFFSCLKNGHHESKILITTHDRSVALQLGSIDIIPV 264 (807)
Q Consensus 197 ~~~~~~l~~~l~~k~~LlVlDdv~~~-~~~~~~~l~~~l~~~~~gs~IliTTR~~~v~~~~~~~~~~~l 264 (807)
+...-.+.+.+-.++-+++||++.+. |....+.+...+....++..||+.||+......+ ++++.+
T Consensus 474 qrQRiaLARall~~~~illLDEpts~LD~~~~~~i~~~L~~~~~~~tiIiitH~~~~~~~~--D~ii~l 540 (571)
T TIGR02203 474 QRQRLAIARALLKDAPILILDEATSALDNESERLVQAALERLMQGRTTLVIAHRLSTIEKA--DRIVVM 540 (571)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHhCCCEEEEEehhhHHHHhC--CEEEEE
Confidence 33344466677778889999999765 5556666777776655667788888888765543 334544
No 462
>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.
Probab=96.91 E-value=0.0097 Score=61.30 Aligned_cols=61 Identities=21% Similarity=0.231 Sum_probs=40.6
Q ss_pred HHHHHHHHHHHhCCceEEEEeCCCCC-CccChHHHHHhhcCC--CCCcEEEEEcCCHHHHHHhC
Q 047321 197 ESLMKQIQEYITGKKIFLVLDDVWDG-DYKKWDPFFSCLKNG--HHESKILITTHDRSVALQLG 257 (807)
Q Consensus 197 ~~~~~~l~~~l~~k~~LlVlDdv~~~-~~~~~~~l~~~l~~~--~~gs~IliTTR~~~v~~~~~ 257 (807)
+...-.+.+.+..++-++++|++.+. |...-+.+...+... ..|..||++|++.+......
T Consensus 153 ~~qrv~laral~~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~vsH~~~~~~~~~ 216 (253)
T TIGR02323 153 MQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRDLGLAVIIVTHDLGVARLLA 216 (253)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhc
Confidence 33444577778889999999999765 444444455555432 23678999999987765433
No 463
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=96.90 E-value=0.0084 Score=68.48 Aligned_cols=62 Identities=13% Similarity=0.210 Sum_probs=41.2
Q ss_pred HHHHHHHHHHHHhCCceEEEEeCCCCC-CccChHHHHHhhcCC-CCCcEEEEEcCCHHHHHHhC
Q 047321 196 FESLMKQIQEYITGKKIFLVLDDVWDG-DYKKWDPFFSCLKNG-HHESKILITTHDRSVALQLG 257 (807)
Q Consensus 196 ~~~~~~~l~~~l~~k~~LlVlDdv~~~-~~~~~~~l~~~l~~~-~~gs~IliTTR~~~v~~~~~ 257 (807)
.+...-.+.+.+..++-+++||++.+. |...-..+...+... ..|..||++|++.+.+..+.
T Consensus 145 G~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvii~sHd~~~~~~~~ 208 (501)
T PRK10762 145 GEQQMVEIAKVLSFESKVIIMDEPTDALTDTETESLFRVIRELKSQGRGIVYISHRLKEIFEIC 208 (501)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCcCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhC
Confidence 344455577888889999999999765 444444444444322 23667999999987665543
No 464
>PRK04132 replication factor C small subunit; Provisional
Probab=96.90 E-value=0.025 Score=66.88 Aligned_cols=154 Identities=12% Similarity=-0.011 Sum_probs=97.4
Q ss_pred c--cCCChHHHHHHHHHcCcccccccc-eEEEEEeCCCCCHHHHHHHHHHHcCCCCCCCccHHHHHHHHHHHHhCCceEE
Q 047321 138 G--LGGIGKTTLAQLAYNNDEVKRNFE-KVIWVCVSNTFEEISVAKAIIEGLGVSAFGLSEFESLMKQIQEYITGKKIFL 214 (807)
Q Consensus 138 G--~gGiGKTtLa~~v~~~~~~~~~f~-~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~Ll 214 (807)
| |.++||||+|..++++. ..+.++ ..+-++.++..... ..++++..+...... -..+.-++
T Consensus 571 G~lPh~lGKTT~A~ala~~l-~g~~~~~~~lElNASd~rgid-~IR~iIk~~a~~~~~--------------~~~~~KVv 634 (846)
T PRK04132 571 GNLPTVLHNTTAALALAREL-FGENWRHNFLELNASDERGIN-VIREKVKEFARTKPI--------------GGASFKII 634 (846)
T ss_pred CCCCCcccHHHHHHHHHHhh-hcccccCeEEEEeCCCcccHH-HHHHHHHHHHhcCCc--------------CCCCCEEE
Confidence 7 88999999999999842 112222 34556666654444 333333332211000 01245799
Q ss_pred EEeCCCCCCccChHHHHHhhcCCCCCcEEEEEcCCH-HHHHHhC-CCceEeCCCCChhhHHHHHHHHHhccCCccCccch
Q 047321 215 VLDDVWDGDYKKWDPFFSCLKNGHHESKILITTHDR-SVALQLG-SIDIIPVKELGEGECWLLFKQIAFLRRSFEDCEKL 292 (807)
Q Consensus 215 VlDdv~~~~~~~~~~l~~~l~~~~~gs~IliTTR~~-~v~~~~~-~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~~ 292 (807)
|+|+++.-+......++..+......+++|++|.+. .+...+. -+..+.+.+++.++....+...+...+- . -.
T Consensus 635 IIDEaD~Lt~~AQnALLk~lEep~~~~~FILi~N~~~kIi~tIrSRC~~i~F~~ls~~~i~~~L~~I~~~Egi-~---i~ 710 (846)
T PRK04132 635 FLDEADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQSRCAIFRFRPLRDEDIAKRLRYIAENEGL-E---LT 710 (846)
T ss_pred EEECcccCCHHHHHHHHHHhhCCCCCeEEEEEeCChhhCchHHhhhceEEeCCCCCHHHHHHHHHHHHHhcCC-C---CC
Confidence 999998777667777888887665667777666654 3332222 2568999999999999888877643221 1 12
Q ss_pred HHHHHHHHHHcCCCHHHHH
Q 047321 293 EPIGRKIASKCKGLPLAAK 311 (807)
Q Consensus 293 ~~~~~~I~~~c~glPLai~ 311 (807)
.+....|++.++|.+..+.
T Consensus 711 ~e~L~~Ia~~s~GDlR~AI 729 (846)
T PRK04132 711 EEGLQAILYIAEGDMRRAI 729 (846)
T ss_pred HHHHHHHHHHcCCCHHHHH
Confidence 4567899999999885443
No 465
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=96.89 E-value=0.0024 Score=62.98 Aligned_cols=122 Identities=19% Similarity=0.249 Sum_probs=62.6
Q ss_pred CceEEEEEccCCChHHHHHHHHHcCcccccccceEEEEEeCCCCCHHHHHHHHHHHcCCCCC---CCccHHHHHHHHHHH
Q 047321 130 GLDVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSNTFEEISVAKAIIEGLGVSAF---GLSEFESLMKQIQEY 206 (807)
Q Consensus 130 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~---~~~~~~~~~~~l~~~ 206 (807)
..+++.|.|++|.||||+.+.+....... + ...+|... ...-.+...|...++.... +......-..++...
T Consensus 28 ~~~~~~l~G~n~~GKstll~~i~~~~~la-~--~G~~vpa~--~~~l~~~d~I~~~~~~~d~~~~~~S~fs~e~~~~~~i 102 (204)
T cd03282 28 SSRFHIITGPNMSGKSTYLKQIALLAIMA-Q--IGCFVPAE--YATLPIFNRLLSRLSNDDSMERNLSTFASEMSETAYI 102 (204)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHH-H--cCCCcchh--hcCccChhheeEecCCccccchhhhHHHHHHHHHHHH
Confidence 34799999999999999998886421111 1 11111110 0001222333333332211 111111112222222
Q ss_pred H--hCCceEEEEeCCCCC-CccCh----HHHHHhhcCCCCCcEEEEEcCCHHHHHHhCC
Q 047321 207 I--TGKKIFLVLDDVWDG-DYKKW----DPFFSCLKNGHHESKILITTHDRSVALQLGS 258 (807)
Q Consensus 207 l--~~k~~LlVlDdv~~~-~~~~~----~~l~~~l~~~~~gs~IliTTR~~~v~~~~~~ 258 (807)
+ ..++-|+++|++... +.... ..+...+.. .|+.+|++|++.+++..+..
T Consensus 103 l~~~~~~~lvllDE~~~gt~~~~~~~l~~~il~~l~~--~~~~~i~~TH~~~l~~~~~~ 159 (204)
T cd03282 103 LDYADGDSLVLIDELGRGTSSADGFAISLAILECLIK--KESTVFFATHFRDIAAILGN 159 (204)
T ss_pred HHhcCCCcEEEeccccCCCCHHHHHHHHHHHHHHHHh--cCCEEEEECChHHHHHHhhc
Confidence 2 357889999998543 12111 123333333 37789999999998877653
No 466
>PRK06835 DNA replication protein DnaC; Validated
Probab=96.89 E-value=0.0024 Score=67.68 Aligned_cols=102 Identities=18% Similarity=0.216 Sum_probs=55.7
Q ss_pred eEEEEEccCCChHHHHHHHHHcCcccccccceEEEEEeCCCCCHHHHHHHHHHHcCCCCCCCccHHHHHHHHHHHHhCCc
Q 047321 132 DVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSNTFEEISVAKAIIEGLGVSAFGLSEFESLMKQIQEYITGKK 211 (807)
Q Consensus 132 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~ 211 (807)
..+.++|+.|+|||.||..+++.. ...-..++++++ ..++..+..... . ...+... .+ +.+. +-
T Consensus 184 ~~Lll~G~~GtGKThLa~aIa~~l--~~~g~~V~y~t~------~~l~~~l~~~~~-~--~~~~~~~---~~-~~l~-~~ 247 (329)
T PRK06835 184 ENLLFYGNTGTGKTFLSNCIAKEL--LDRGKSVIYRTA------DELIEILREIRF-N--NDKELEE---VY-DLLI-NC 247 (329)
T ss_pred CcEEEECCCCCcHHHHHHHHHHHH--HHCCCeEEEEEH------HHHHHHHHHHHh-c--cchhHHH---HH-HHhc-cC
Confidence 679999999999999999998842 222224556653 223333322110 0 0111111 11 2222 34
Q ss_pred eEEEEeCCCCCCccChH--HHHHhhcCC-CCCcEEEEEcCC
Q 047321 212 IFLVLDDVWDGDYKKWD--PFFSCLKNG-HHESKILITTHD 249 (807)
Q Consensus 212 ~LlVlDdv~~~~~~~~~--~l~~~l~~~-~~gs~IliTTR~ 249 (807)
-|||+||+..+....|. .+...+... ..+..+||||..
T Consensus 248 DLLIIDDlG~e~~t~~~~~~Lf~iin~R~~~~k~tIiTSNl 288 (329)
T PRK06835 248 DLLIIDDLGTEKITEFSKSELFNLINKRLLRQKKMIISTNL 288 (329)
T ss_pred CEEEEeccCCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCC
Confidence 68999999665444443 355555433 234458888764
No 467
>PRK14257 phosphate ABC transporter ATP-binding protein; Provisional
Probab=96.89 E-value=0.0092 Score=63.69 Aligned_cols=58 Identities=17% Similarity=0.075 Sum_probs=39.4
Q ss_pred HHHHHHHHHHhCCceEEEEeCCCCC-CccChHHHHHhhcCCCCCcEEEEEcCCHHHHHH
Q 047321 198 SLMKQIQEYITGKKIFLVLDDVWDG-DYKKWDPFFSCLKNGHHESKILITTHDRSVALQ 255 (807)
Q Consensus 198 ~~~~~l~~~l~~k~~LlVlDdv~~~-~~~~~~~l~~~l~~~~~gs~IliTTR~~~v~~~ 255 (807)
...-.+.+.+-.++-+++||++... |......+...+.....+..||++|++.+....
T Consensus 231 kqRl~LARAl~~~p~IlLLDEPts~LD~~~~~~i~~~i~~l~~~~Tii~iTH~l~~i~~ 289 (329)
T PRK14257 231 QQRLCIARAIALEPEVLLMDEPTSALDPIATAKIEELILELKKKYSIIIVTHSMAQAQR 289 (329)
T ss_pred HHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHH
Confidence 3344467777888889999999664 444444455555544445678989988876654
No 468
>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional
Probab=96.89 E-value=0.0098 Score=63.49 Aligned_cols=58 Identities=16% Similarity=0.154 Sum_probs=39.3
Q ss_pred HHHHHHHHhCCceEEEEeCCCCC-CccChHHHHHhhcCC--CCCcEEEEEcCCHHHHHHhC
Q 047321 200 MKQIQEYITGKKIFLVLDDVWDG-DYKKWDPFFSCLKNG--HHESKILITTHDRSVALQLG 257 (807)
Q Consensus 200 ~~~l~~~l~~k~~LlVlDdv~~~-~~~~~~~l~~~l~~~--~~gs~IliTTR~~~v~~~~~ 257 (807)
.-.+.+.+..++-+||+|+.... |...-..+...+... ..|..||++|++..++..+.
T Consensus 161 Rv~iArAL~~~P~llilDEPts~LD~~~~~~il~lL~~l~~~~g~til~iTHdl~~~~~~a 221 (326)
T PRK11022 161 RVMIAMAIACRPKLLIADEPTTALDVTIQAQIIELLLELQQKENMALVLITHDLALVAEAA 221 (326)
T ss_pred HHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhC
Confidence 33466777788889999999665 444344455554432 24678999999988876544
No 469
>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair]
Probab=96.89 E-value=0.035 Score=62.42 Aligned_cols=206 Identities=14% Similarity=0.099 Sum_probs=119.9
Q ss_pred CccccccchHHHHHHHHhCCCCCCCCCceEEEEEccCCChHHHHHHHHHcCcc------cccccceEEEEEeCCCCCHHH
Q 047321 104 GGVCGRVDEKNELLSKLLCGSSEQQKGLDVISLVGLGGIGKTTLAQLAYNNDE------VKRNFEKVIWVCVSNTFEEIS 177 (807)
Q Consensus 104 ~~~vGR~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~------~~~~f~~~~wv~~~~~~~~~~ 177 (807)
..+-+|+.+..+|...+...-.. +...+.+.|.|.+|+|||..+..|.+..+ --..|+ .+.|+...-....+
T Consensus 396 ~sLpcRe~E~~~I~~f~~~~i~~-~~~g~~mYIsGvPGtGKT~tV~~Vm~~Lq~~s~~~e~p~f~-yveINgm~l~~~~~ 473 (767)
T KOG1514|consen 396 ESLPCRENEFSEIEDFLRSFISD-QGLGSCMYISGVPGTGKTATVLEVMKELQTSSAQKELPKFD-YVEINGLRLASPRE 473 (767)
T ss_pred ccccchhHHHHHHHHHHHhhcCC-CCCceeEEEecCCCCCceehHHHHHHHHHHHHhhcCCCCcc-EEEEcceeecCHHH
Confidence 45789999999998887654332 24556999999999999999999987322 112343 23455555567899
Q ss_pred HHHHHHHHcCCCCCCCccHHHHHHHHHHHHh-----CCceEEEEeCCCCCCccChHHHHHhhcCC-CCCcEEEEEcC-C-
Q 047321 178 VAKAIIEGLGVSAFGLSEFESLMKQIQEYIT-----GKKIFLVLDDVWDGDYKKWDPFFSCLKNG-HHESKILITTH-D- 249 (807)
Q Consensus 178 ~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~-----~k~~LlVlDdv~~~~~~~~~~l~~~l~~~-~~gs~IliTTR-~- 249 (807)
++..|...+.+.... .....+.+..++. .+..++++|+++.--...-+.+...|.+- .++|+++|.+= +
T Consensus 474 ~Y~~I~~~lsg~~~~---~~~al~~L~~~f~~~k~~~~~~VvLiDElD~Lvtr~QdVlYn~fdWpt~~~sKLvvi~IaNT 550 (767)
T KOG1514|consen 474 IYEKIWEALSGERVT---WDAALEALNFRFTVPKPKRSTTVVLIDELDILVTRSQDVLYNIFDWPTLKNSKLVVIAIANT 550 (767)
T ss_pred HHHHHHHhcccCccc---HHHHHHHHHHhhccCCCCCCCEEEEeccHHHHhcccHHHHHHHhcCCcCCCCceEEEEeccc
Confidence 999999999776432 2334455555553 46789999988432112233455555553 56777665542 1
Q ss_pred HHH---------HHHhCCCceEeCCCCChhhHHHHHHHHHhccCCccCccchHHHHHHHHHHcCCCHHHHHHHHHH
Q 047321 250 RSV---------ALQLGSIDIIPVKELGEGECWLLFKQIAFLRRSFEDCEKLEPIGRKIASKCKGLPLAAKVIGNL 316 (807)
Q Consensus 250 ~~v---------~~~~~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~~~~I~~~c~glPLai~~~~~~ 316 (807)
.+. ...++ ...+...+.+.++-.++...+..+... ......+=++++|+.-.|-.-.|+.+.-+.
T Consensus 551 mdlPEr~l~nrvsSRlg-~tRi~F~pYth~qLq~Ii~~RL~~~~~-f~~~aielvarkVAavSGDaRraldic~RA 624 (767)
T KOG1514|consen 551 MDLPERLLMNRVSSRLG-LTRICFQPYTHEQLQEIISARLKGLDA-FENKAIELVARKVAAVSGDARRALDICRRA 624 (767)
T ss_pred ccCHHHHhccchhhhcc-ceeeecCCCCHHHHHHHHHHhhcchhh-cchhHHHHHHHHHHhccccHHHHHHHHHHH
Confidence 111 11111 235666777777766666655433211 112223334555555555555555544443
No 470
>TIGR01192 chvA glucan exporter ATP-binding protein. This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.
Probab=96.88 E-value=0.01 Score=69.04 Aligned_cols=66 Identities=17% Similarity=0.112 Sum_probs=43.8
Q ss_pred HHHHHHHHHHHhCCceEEEEeCCCCC-CccChHHHHHhhcCCCCCcEEEEEcCCHHHHHHhCCCceEeC
Q 047321 197 ESLMKQIQEYITGKKIFLVLDDVWDG-DYKKWDPFFSCLKNGHHESKILITTHDRSVALQLGSIDIIPV 264 (807)
Q Consensus 197 ~~~~~~l~~~l~~k~~LlVlDdv~~~-~~~~~~~l~~~l~~~~~gs~IliTTR~~~v~~~~~~~~~~~l 264 (807)
+...-.+.+.+-.++-++|||++.+. |......+...+.....+..||++|++...... .++++.+
T Consensus 476 q~qrl~lARall~~p~ililDEpts~LD~~~~~~i~~~l~~~~~~~tvI~isH~~~~~~~--~d~i~~l 542 (585)
T TIGR01192 476 ERQRLAIARAILKNAPILVLDEATSALDVETEARVKNAIDALRKNRTTFIIAHRLSTVRN--ADLVLFL 542 (585)
T ss_pred HHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHhCCCEEEEEEcChHHHHc--CCEEEEE
Confidence 33334577788889999999999765 555555566666554456678888888766543 3344444
No 471
>PRK07261 topology modulation protein; Provisional
Probab=96.88 E-value=0.0026 Score=60.95 Aligned_cols=64 Identities=16% Similarity=0.326 Sum_probs=39.2
Q ss_pred EEEEEccCCChHHHHHHHHHcCccc-ccccceEEEEEeCCCCCHHHHHHHHHHHcCCCCCCCccHHHHHHHHHHHHhCCc
Q 047321 133 VISLVGLGGIGKTTLAQLAYNNDEV-KRNFEKVIWVCVSNTFEEISVAKAIIEGLGVSAFGLSEFESLMKQIQEYITGKK 211 (807)
Q Consensus 133 vi~I~G~gGiGKTtLa~~v~~~~~~-~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~ 211 (807)
.|.|+|++|+||||||+.+...... .-+.|...|-.. ....+.++....+.+.+.+.+
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~~~~~~i~~D~~~~~~~---------------------~~~~~~~~~~~~~~~~~~~~~ 60 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQHYNCPVLHLDTLHFQPN---------------------WQERDDDDMIADISNFLLKHD 60 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHhCCCeEecCCEEeccc---------------------cccCCHHHHHHHHHHHHhCCC
Confidence 4899999999999999998753221 123344444211 011223445566666676666
Q ss_pred eEEEEeCC
Q 047321 212 IFLVLDDV 219 (807)
Q Consensus 212 ~LlVlDdv 219 (807)
.|+|..
T Consensus 61 --wIidg~ 66 (171)
T PRK07261 61 --WIIDGN 66 (171)
T ss_pred --EEEcCc
Confidence 577876
No 472
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=96.88 E-value=0.0022 Score=63.22 Aligned_cols=111 Identities=14% Similarity=0.225 Sum_probs=60.3
Q ss_pred eEEEEEccCCChHHHHHHHHHcCcccccccceEEEEEeCCCCCHH-HHHHHHHHHcCCCCCCCccHHHHHHHHHHHHhCC
Q 047321 132 DVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSNTFEEI-SVAKAIIEGLGVSAFGLSEFESLMKQIQEYITGK 210 (807)
Q Consensus 132 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~-~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k 210 (807)
.+|.|+|+.|+||||++..+... ........+++. .+..... .-...+..+ ...+ .+.....+.++..+...
T Consensus 2 GlilI~GptGSGKTTll~~ll~~--~~~~~~~~i~t~-e~~~E~~~~~~~~~i~q---~~vg-~~~~~~~~~i~~aLr~~ 74 (198)
T cd01131 2 GLVLVTGPTGSGKSTTLAAMIDY--INKNKTHHILTI-EDPIEFVHESKRSLINQ---REVG-LDTLSFENALKAALRQD 74 (198)
T ss_pred cEEEEECCCCCCHHHHHHHHHHH--hhhcCCcEEEEE-cCCccccccCccceeee---cccC-CCccCHHHHHHHHhcCC
Confidence 47899999999999999987652 222223333332 2221100 000001100 0011 11223455677778778
Q ss_pred ceEEEEeCCCCCCccChHHHHHhhcCCCCCcEEEEEcCCHHHHH
Q 047321 211 KIFLVLDDVWDGDYKKWDPFFSCLKNGHHESKILITTHDRSVAL 254 (807)
Q Consensus 211 ~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~IliTTR~~~v~~ 254 (807)
+-++++|++.+ .+.+...... ...|..++.|++..++..
T Consensus 75 pd~ii~gEird--~e~~~~~l~~---a~~G~~v~~t~Ha~~~~~ 113 (198)
T cd01131 75 PDVILVGEMRD--LETIRLALTA---AETGHLVMSTLHTNSAAK 113 (198)
T ss_pred cCEEEEcCCCC--HHHHHHHHHH---HHcCCEEEEEecCCcHHH
Confidence 88999999953 3333332222 234566899998876654
No 473
>CHL00095 clpC Clp protease ATP binding subunit
Probab=96.88 E-value=0.0039 Score=75.20 Aligned_cols=124 Identities=16% Similarity=0.235 Sum_probs=70.9
Q ss_pred CccccccchHHHHHHHHhCCCC---CCCCCceEEEEEccCCChHHHHHHHHHcCcccccccceEEEEEeCCCCCHHHHHH
Q 047321 104 GGVCGRVDEKNELLSKLLCGSS---EQQKGLDVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSNTFEEISVAK 180 (807)
Q Consensus 104 ~~~vGR~~~~~~l~~~L~~~~~---~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~ 180 (807)
..++|-++.++.+...+..... ..+.....+.++|+.|+|||+||+.++.. .-..-...+-++.+...+...+
T Consensus 509 ~~v~GQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKt~lA~~LA~~--l~~~~~~~~~~d~s~~~~~~~~-- 584 (821)
T CHL00095 509 KRIIGQDEAVVAVSKAIRRARVGLKNPNRPIASFLFSGPTGVGKTELTKALASY--FFGSEDAMIRLDMSEYMEKHTV-- 584 (821)
T ss_pred CcCcChHHHHHHHHHHHHHHhhcccCCCCCceEEEEECCCCCcHHHHHHHHHHH--hcCCccceEEEEchhccccccH--
Confidence 4689999999999888753211 11223456789999999999999998762 1111112333344332221111
Q ss_pred HHHHHcCCC--CCCCccHHHHHHHHHHHHhCCc-eEEEEeCCCCCCccChHHHHHhhcCC
Q 047321 181 AIIEGLGVS--AFGLSEFESLMKQIQEYITGKK-IFLVLDDVWDGDYKKWDPFFSCLKNG 237 (807)
Q Consensus 181 ~i~~~l~~~--~~~~~~~~~~~~~l~~~l~~k~-~LlVlDdv~~~~~~~~~~l~~~l~~~ 237 (807)
...++.. ..+..+.. .+.+.++.++ -+++||++...+...+..+...+..+
T Consensus 585 --~~l~g~~~gyvg~~~~~----~l~~~~~~~p~~VvllDeieka~~~v~~~Llq~le~g 638 (821)
T CHL00095 585 --SKLIGSPPGYVGYNEGG----QLTEAVRKKPYTVVLFDEIEKAHPDIFNLLLQILDDG 638 (821)
T ss_pred --HHhcCCCCcccCcCccc----hHHHHHHhCCCeEEEECChhhCCHHHHHHHHHHhccC
Confidence 1112211 11112222 2344455555 58899999777777788888877654
No 474
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=96.87 E-value=0.0021 Score=67.76 Aligned_cols=129 Identities=22% Similarity=0.302 Sum_probs=72.9
Q ss_pred CceEEEEEccCCChHHHHHHHHHcCccccc----------------------ccce-EEE--EEeCCC----------C-
Q 047321 130 GLDVISLVGLGGIGKTTLAQLAYNNDEVKR----------------------NFEK-VIW--VCVSNT----------F- 173 (807)
Q Consensus 130 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~----------------------~f~~-~~w--v~~~~~----------~- 173 (807)
.-.++.+.|++|+||||+.+.++.-..... -|+. .+| .+|.++ .
T Consensus 30 ~Gef~~lLGPSGcGKTTlLR~IAGfe~p~~G~I~l~G~~i~~lpp~kR~ig~VFQ~YALFPHltV~~NVafGLk~~~~~~ 109 (352)
T COG3842 30 KGEFVTLLGPSGCGKTTLLRMIAGFEQPSSGEILLDGEDITDVPPEKRPIGMVFQSYALFPHMTVEENVAFGLKVRKKLK 109 (352)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhhcccceeecCcccCCCCcHHHHhhhhhhhcCCCC
Confidence 347999999999999999999964221110 0110 000 011111 0
Q ss_pred --CHHHHHHHHHHHcCCCCC------CCccHHHHHHHHHHHHhCCceEEEEeCCCCC-CccChHHHHHhhcC--CCCCcE
Q 047321 174 --EEISVAKAIIEGLGVSAF------GLSEFESLMKQIQEYITGKKIFLVLDDVWDG-DYKKWDPFFSCLKN--GHHESK 242 (807)
Q Consensus 174 --~~~~~~~~i~~~l~~~~~------~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~-~~~~~~~l~~~l~~--~~~gs~ 242 (807)
...+...++++.++.... +.....+....+.+.|..++-+|.||+.-+. |..--+.+...+.. ...|..
T Consensus 110 ~~~i~~rv~e~L~lV~L~~~~~R~p~qLSGGQqQRVALARAL~~~P~vLLLDEPlSaLD~kLR~~mr~Elk~lq~~~giT 189 (352)
T COG3842 110 KAEIKARVEEALELVGLEGFADRKPHQLSGGQQQRVALARALVPEPKVLLLDEPLSALDAKLREQMRKELKELQRELGIT 189 (352)
T ss_pred HHHHHHHHHHHHHHcCchhhhhhChhhhChHHHHHHHHHHHhhcCcchhhhcCcccchhHHHHHHHHHHHHHHHHhcCCe
Confidence 122234444554444321 1233444556688999999999999998654 22222223333321 234778
Q ss_pred EEEEcCCHHHHHHhCC
Q 047321 243 ILITTHDRSVALQLGS 258 (807)
Q Consensus 243 IliTTR~~~v~~~~~~ 258 (807)
.|..|++..-|..+..
T Consensus 190 ~i~VTHDqeEAl~msD 205 (352)
T COG3842 190 FVYVTHDQEEALAMSD 205 (352)
T ss_pred EEEEECCHHHHhhhcc
Confidence 9999999887766654
No 475
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=96.87 E-value=0.011 Score=68.37 Aligned_cols=57 Identities=18% Similarity=0.126 Sum_probs=40.2
Q ss_pred HHHHHHHHHhCCceEEEEeCCCCC-CccChHHHHHhhcCCCCCcEEEEEcCCHHHHHHhC
Q 047321 199 LMKQIQEYITGKKIFLVLDDVWDG-DYKKWDPFFSCLKNGHHESKILITTHDRSVALQLG 257 (807)
Q Consensus 199 ~~~~l~~~l~~k~~LlVlDdv~~~-~~~~~~~l~~~l~~~~~gs~IliTTR~~~v~~~~~ 257 (807)
..-.+.+.+-.++-+++||++.+. |......+...+.... + .||++|++.+.+..+.
T Consensus 170 qrv~la~al~~~p~vlLLDEPt~~LD~~~~~~l~~~L~~~~-~-tviiisHd~~~~~~~~ 227 (556)
T PRK11819 170 RRVALCRLLLEKPDMLLLDEPTNHLDAESVAWLEQFLHDYP-G-TVVAVTHDRYFLDNVA 227 (556)
T ss_pred HHHHHHHHHhCCCCEEEEcCCCCcCChHHHHHHHHHHHhCC-C-eEEEEeCCHHHHHhhc
Confidence 344466777788889999999775 4445555666665543 4 6999999988776654
No 476
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=96.86 E-value=0.0061 Score=65.44 Aligned_cols=142 Identities=16% Similarity=0.171 Sum_probs=83.4
Q ss_pred ccccccchHHHHHHHHhCCCCCCCCCceEEEEEccCCChHHHHHHHHHcCccccc-------------------ccceEE
Q 047321 105 GVCGRVDEKNELLSKLLCGSSEQQKGLDVISLVGLGGIGKTTLAQLAYNNDEVKR-------------------NFEKVI 165 (807)
Q Consensus 105 ~~vGR~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~-------------------~f~~~~ 165 (807)
.++|-+....++..+..... .....+.++|+.|+||||+|..+.+...-.. ..+.+.
T Consensus 2 ~~~~~~~~~~~l~~~~~~~~----~~~halL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~~~~~~~~~~d~l 77 (325)
T COG0470 2 ELVPWQEAVKRLLVQALESG----RLPHALLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHCRSCKLIPAGNHPDFL 77 (325)
T ss_pred CcccchhHHHHHHHHHHhcC----CCCceeeeeCCCCCCHHHHHHHHHHHHhCCCcccCCcccchhhhhHHhhcCCCceE
Confidence 46777888888888887432 1233599999999999999988876311000 112333
Q ss_pred EEEeCCCCC---HHHHHHHHHHHcCCCCCCCccHHHHHHHHHHHHhCCceEEEEeCCCCCCccChHHHHHhhcCCCCCcE
Q 047321 166 WVCVSNTFE---EISVAKAIIEGLGVSAFGLSEFESLMKQIQEYITGKKIFLVLDDVWDGDYKKWDPFFSCLKNGHHESK 242 (807)
Q Consensus 166 wv~~~~~~~---~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ 242 (807)
.++.++... ..+..+++.+....... .++.-++++|++.......-..++..+......+.
T Consensus 78 el~~s~~~~~~i~~~~vr~~~~~~~~~~~----------------~~~~kviiidead~mt~~A~nallk~lEep~~~~~ 141 (325)
T COG0470 78 ELNPSDLRKIDIIVEQVRELAEFLSESPL----------------EGGYKVVIIDEADKLTEDAANALLKTLEEPPKNTR 141 (325)
T ss_pred EecccccCCCcchHHHHHHHHHHhccCCC----------------CCCceEEEeCcHHHHhHHHHHHHHHHhccCCCCeE
Confidence 343333332 12223333332221110 35678999999976655555667777777777888
Q ss_pred EEEEcCCHH-HHHHhC-CCceEeCCC
Q 047321 243 ILITTHDRS-VALQLG-SIDIIPVKE 266 (807)
Q Consensus 243 IliTTR~~~-v~~~~~-~~~~~~l~~ 266 (807)
+|++|.+.. +...+. ....+.+.+
T Consensus 142 ~il~~n~~~~il~tI~SRc~~i~f~~ 167 (325)
T COG0470 142 FILITNDPSKILPTIRSRCQRIRFKP 167 (325)
T ss_pred EEEEcCChhhccchhhhcceeeecCC
Confidence 888887432 222222 234666666
No 477
>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=96.86 E-value=0.011 Score=62.27 Aligned_cols=58 Identities=22% Similarity=0.286 Sum_probs=38.3
Q ss_pred HHHHHHHHhCCceEEEEeCCCCC-CccChHHHHHhhcCC--CCCcEEEEEcCCHHHHHHhC
Q 047321 200 MKQIQEYITGKKIFLVLDDVWDG-DYKKWDPFFSCLKNG--HHESKILITTHDRSVALQLG 257 (807)
Q Consensus 200 ~~~l~~~l~~k~~LlVlDdv~~~-~~~~~~~l~~~l~~~--~~gs~IliTTR~~~v~~~~~ 257 (807)
.-.+.+.+..++-+++||++... |...-..+...+... ..|..||++|++.+.+..+.
T Consensus 158 rv~laral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiiisH~~~~~~~~~ 218 (289)
T PRK13645 158 RVALAGIIAMDGNTLVLDEPTGGLDPKGEEDFINLFERLNKEYKKRIIMVTHNMDQVLRIA 218 (289)
T ss_pred HHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhC
Confidence 34466777788889999999765 443444455554432 23678999999987655443
No 478
>PLN03073 ABC transporter F family; Provisional
Probab=96.86 E-value=0.013 Score=69.30 Aligned_cols=55 Identities=13% Similarity=0.086 Sum_probs=38.7
Q ss_pred HHHHHHhCCceEEEEeCCCCC-CccChHHHHHhhcCCCCCcEEEEEcCCHHHHHHhCC
Q 047321 202 QIQEYITGKKIFLVLDDVWDG-DYKKWDPFFSCLKNGHHESKILITTHDRSVALQLGS 258 (807)
Q Consensus 202 ~l~~~l~~k~~LlVlDdv~~~-~~~~~~~l~~~l~~~~~gs~IliTTR~~~v~~~~~~ 258 (807)
.|.+.+-.++-+|+||++.+. |...-..+...+... +..|||+|++......+.+
T Consensus 354 ~LA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~--~~tviivsHd~~~l~~~~d 409 (718)
T PLN03073 354 ALARALFIEPDLLLLDEPTNHLDLHAVLWLETYLLKW--PKTFIVVSHAREFLNTVVT 409 (718)
T ss_pred HHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHc--CCEEEEEECCHHHHHHhCC
Confidence 466667778889999999775 444444566666554 4569999999887765443
No 479
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=96.85 E-value=0.0012 Score=78.20 Aligned_cols=120 Identities=21% Similarity=0.250 Sum_probs=58.9
Q ss_pred CceEEEEEccCCChHHHHHHHHHcCcccccccceEEEEEeCCCCCHHHHHHHHHHHcCCCC---CCCccHHHHHHHHHHH
Q 047321 130 GLDVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSNTFEEISVAKAIIEGLGVSA---FGLSEFESLMKQIQEY 206 (807)
Q Consensus 130 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~---~~~~~~~~~~~~l~~~ 206 (807)
+.++++|+|++|.||||+.+.+....... ...++|.+..... ...+.++...++... ........-...+...
T Consensus 321 ~~~~liItGpNg~GKSTlLK~i~~~~l~a---q~G~~Vpa~~~~~-~~~~d~i~~~i~~~~si~~~LStfS~~m~~~~~i 396 (771)
T TIGR01069 321 EKRVLAITGPNTGGKTVTLKTLGLLALMF---QSGIPIPANEHSE-IPYFEEIFADIGDEQSIEQNLSTFSGHMKNISAI 396 (771)
T ss_pred CceEEEEECCCCCCchHHHHHHHHHHHHH---HhCCCccCCcccc-ccchhheeeecChHhHHhhhhhHHHHHHHHHHHH
Confidence 45799999999999999999886421000 0011111111000 000111111111100 0011111112223333
Q ss_pred Hh--CCceEEEEeCCCCC-CccChHHH----HHhhcCCCCCcEEEEEcCCHHHHHH
Q 047321 207 IT--GKKIFLVLDDVWDG-DYKKWDPF----FSCLKNGHHESKILITTHDRSVALQ 255 (807)
Q Consensus 207 l~--~k~~LlVlDdv~~~-~~~~~~~l----~~~l~~~~~gs~IliTTR~~~v~~~ 255 (807)
+. +.+-|+++|++... +......+ ...+. ..|+.+|+||+...+...
T Consensus 397 l~~~~~~sLvLlDE~g~GtD~~eg~ala~aiLe~l~--~~g~~viitTH~~eL~~~ 450 (771)
T TIGR01069 397 LSKTTENSLVLFDELGAGTDPDEGSALAISILEYLL--KQNAQVLITTHYKELKAL 450 (771)
T ss_pred HHhcCCCcEEEecCCCCCCCHHHHHHHHHHHHHHHH--hcCCEEEEECChHHHHHH
Confidence 33 47899999999664 33333333 22332 357889999999887654
No 480
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=96.85 E-value=0.0066 Score=62.41 Aligned_cols=125 Identities=16% Similarity=0.095 Sum_probs=66.8
Q ss_pred hHHHHHHHHhCCCCCCCCCceEEEEEccCCChHHHHHHHHHcCcccccccceEEEEE---eCCCCCHHHHHHHHHHHcCC
Q 047321 112 EKNELLSKLLCGSSEQQKGLDVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVC---VSNTFEEISVAKAIIEGLGV 188 (807)
Q Consensus 112 ~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~---~~~~~~~~~~~~~i~~~l~~ 188 (807)
..+.++..+.. .....-++|+|+.|+|||||++.+..... .....+++. +....+.. ++......
T Consensus 97 ~~~~~l~~l~~-----~~~~~~~~i~g~~g~GKttl~~~l~~~~~---~~~G~i~~~g~~v~~~d~~~----ei~~~~~~ 164 (270)
T TIGR02858 97 AADKLLPYLVR-----NNRVLNTLIISPPQCGKTTLLRDLARILS---TGISQLGLRGKKVGIVDERS----EIAGCVNG 164 (270)
T ss_pred cHHHHHHHHHh-----CCCeeEEEEEcCCCCCHHHHHHHHhCccC---CCCceEEECCEEeecchhHH----HHHHHhcc
Confidence 34555555553 22457899999999999999999987322 222333331 11111112 22222211
Q ss_pred ---CCC----CC-ccHHHHHHHHHHHHh-CCceEEEEeCCCCCCccChHHHHHhhcCCCCCcEEEEEcCCHHHHH
Q 047321 189 ---SAF----GL-SEFESLMKQIQEYIT-GKKIFLVLDDVWDGDYKKWDPFFSCLKNGHHESKILITTHDRSVAL 254 (807)
Q Consensus 189 ---~~~----~~-~~~~~~~~~l~~~l~-~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~IliTTR~~~v~~ 254 (807)
... +. ..... ...+...+. ..+-++++|++.. .+.+..+...+. .|..||+||++..+..
T Consensus 165 ~~q~~~~~r~~v~~~~~k-~~~~~~~i~~~~P~villDE~~~--~e~~~~l~~~~~---~G~~vI~ttH~~~~~~ 233 (270)
T TIGR02858 165 VPQHDVGIRTDVLDGCPK-AEGMMMLIRSMSPDVIVVDEIGR--EEDVEALLEALH---AGVSIIATAHGRDVED 233 (270)
T ss_pred cccccccccccccccchH-HHHHHHHHHhCCCCEEEEeCCCc--HHHHHHHHHHHh---CCCEEEEEechhHHHH
Confidence 110 01 11111 122333332 5889999999843 334444544443 4778999999877644
No 481
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in
Probab=96.84 E-value=0.013 Score=59.15 Aligned_cols=55 Identities=18% Similarity=0.137 Sum_probs=36.5
Q ss_pred HHHHHHHhCCceEEEEeCCCCC-CccChHHHHHhhcCC-CCCcEEEEEcCCH--HHHHH
Q 047321 201 KQIQEYITGKKIFLVLDDVWDG-DYKKWDPFFSCLKNG-HHESKILITTHDR--SVALQ 255 (807)
Q Consensus 201 ~~l~~~l~~k~~LlVlDdv~~~-~~~~~~~l~~~l~~~-~~gs~IliTTR~~--~v~~~ 255 (807)
-.+.+.+...+-++++|++... |......+...+... ..|..||+||++. .+...
T Consensus 152 l~laral~~~p~illlDEP~~gLD~~~~~~~~~~l~~~~~~~~tiii~sh~~~~~~~~~ 210 (226)
T cd03234 152 VSIAVQLLWDPKVLILDEPTSGLDSFTALNLVSTLSQLARRNRIVILTIHQPRSDLFRL 210 (226)
T ss_pred HHHHHHHHhCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHh
Confidence 3466677778889999999664 545555566655432 2366799999985 44443
No 482
>PRK13695 putative NTPase; Provisional
Probab=96.84 E-value=0.0015 Score=62.97 Aligned_cols=22 Identities=36% Similarity=0.425 Sum_probs=19.5
Q ss_pred EEEEEccCCChHHHHHHHHHcC
Q 047321 133 VISLVGLGGIGKTTLAQLAYNN 154 (807)
Q Consensus 133 vi~I~G~gGiGKTtLa~~v~~~ 154 (807)
.|+|+|.+|+|||||++.+++.
T Consensus 2 ~i~ltG~~G~GKTTll~~i~~~ 23 (174)
T PRK13695 2 KIGITGPPGVGKTTLVLKIAEL 23 (174)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999998764
No 483
>PRK14266 phosphate ABC transporter ATP-binding protein; Provisional
Probab=96.83 E-value=0.011 Score=60.71 Aligned_cols=58 Identities=16% Similarity=0.134 Sum_probs=39.7
Q ss_pred HHHHHHHHhCCceEEEEeCCCCC-CccChHHHHHhhcCCCCCcEEEEEcCCHHHHHHhC
Q 047321 200 MKQIQEYITGKKIFLVLDDVWDG-DYKKWDPFFSCLKNGHHESKILITTHDRSVALQLG 257 (807)
Q Consensus 200 ~~~l~~~l~~k~~LlVlDdv~~~-~~~~~~~l~~~l~~~~~gs~IliTTR~~~v~~~~~ 257 (807)
.-.+.+.+..++-++++|++... |......+...+.....+..||++|++........
T Consensus 154 rv~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~tiii~sh~~~~~~~~~ 212 (250)
T PRK14266 154 RLCIARTIAVSPEVILMDEPCSALDPISTTKIEDLIHKLKEDYTIVIVTHNMQQATRVS 212 (250)
T ss_pred HHHHHHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCeEEEEECCHHHHHhhc
Confidence 34466777788889999999765 44455556666654444677999998877655443
No 484
>cd03290 ABCC_SUR1_N The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=96.83 E-value=0.024 Score=56.91 Aligned_cols=67 Identities=16% Similarity=0.152 Sum_probs=41.3
Q ss_pred HHHHHHHHHHHHhCCceEEEEeCCCCC-CccChHHHHH--hhcC-CCCCcEEEEEcCCHHHHHHhCCCceEeC
Q 047321 196 FESLMKQIQEYITGKKIFLVLDDVWDG-DYKKWDPFFS--CLKN-GHHESKILITTHDRSVALQLGSIDIIPV 264 (807)
Q Consensus 196 ~~~~~~~l~~~l~~k~~LlVlDdv~~~-~~~~~~~l~~--~l~~-~~~gs~IliTTR~~~v~~~~~~~~~~~l 264 (807)
.+...-.+.+.+..++-++++|++... |....+.+.. .+.. ...|..||++|++...... ...++.+
T Consensus 144 G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~~ll~~~~~~~~tii~~sH~~~~~~~--~d~i~~l 214 (218)
T cd03290 144 GQRQRICVARALYQNTNIVFLDDPFSALDIHLSDHLMQEGILKFLQDDKRTLVLVTHKLQYLPH--ADWIIAM 214 (218)
T ss_pred HHHHHHHHHHHHhhCCCEEEEeCCccccCHHHHHHHHHHHHHHHHhcCCCEEEEEeCChHHHhh--CCEEEEe
Confidence 334445577778888899999999665 4444444443 2221 1236789999999877643 3344444
No 485
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=96.83 E-value=0.031 Score=57.87 Aligned_cols=202 Identities=17% Similarity=0.175 Sum_probs=110.2
Q ss_pred ccccccchHHHHHHHHhCCCCC-------CCCCceEEEEEccCCChHHHHHHHHHcCcccccccceEEEEEeCCCCCHHH
Q 047321 105 GVCGRVDEKNELLSKLLCGSSE-------QQKGLDVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSNTFEEIS 177 (807)
Q Consensus 105 ~~vGR~~~~~~l~~~L~~~~~~-------~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~ 177 (807)
++=|-++++++|.+...-+-.. +-...+=|.++|++|.|||-||++|++. ....| +.|... +
T Consensus 152 dIGGL~~Qi~EirE~VELPL~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~~--T~AtF-----IrvvgS----E 220 (406)
T COG1222 152 DIGGLDEQIQEIREVVELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVANQ--TDATF-----IRVVGS----E 220 (406)
T ss_pred hccCHHHHHHHHHHHhcccccCHHHHHHcCCCCCCceEeeCCCCCcHHHHHHHHHhc--cCceE-----EEeccH----H
Confidence 3566788899888877443211 1345677899999999999999999993 33333 333222 1
Q ss_pred HHHHHHHHcCCCCCCCccHHHHHHHHHHHHh-CCceEEEEeCCCC-----------CCccChHHHHHhhc---CC--CCC
Q 047321 178 VAKAIIEGLGVSAFGLSEFESLMKQIQEYIT-GKKIFLVLDDVWD-----------GDYKKWDPFFSCLK---NG--HHE 240 (807)
Q Consensus 178 ~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~-~k~~LlVlDdv~~-----------~~~~~~~~l~~~l~---~~--~~g 240 (807)
+.++ .++ +...+.+.+.+.-+ ..+.+|.+|+++. .+.+.-..+...|. .+ ...
T Consensus 221 lVqK---YiG-------EGaRlVRelF~lArekaPsIIFiDEIDAIg~kR~d~~t~gDrEVQRTmleLL~qlDGFD~~~n 290 (406)
T COG1222 221 LVQK---YIG-------EGARLVRELFELAREKAPSIIFIDEIDAIGAKRFDSGTSGDREVQRTMLELLNQLDGFDPRGN 290 (406)
T ss_pred HHHH---Hhc-------cchHHHHHHHHHHhhcCCeEEEEechhhhhcccccCCCCchHHHHHHHHHHHHhccCCCCCCC
Confidence 1111 111 12334444555444 4588999998832 12222222333333 22 245
Q ss_pred cEEEEEcCCHHHHHH--hC---CCceEeCCCCChhhHHHHHHHHHhccCCccCccchHHHHHHHHHHcCCCH----HHHH
Q 047321 241 SKILITTHDRSVALQ--LG---SIDIIPVKELGEGECWLLFKQIAFLRRSFEDCEKLEPIGRKIASKCKGLP----LAAK 311 (807)
Q Consensus 241 s~IliTTR~~~v~~~--~~---~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~~~~I~~~c~glP----Lai~ 311 (807)
.|||..|-..++..- +. -...++++.-+.+.-.++|+-++-. .+....-.+ +.+++.|.|.- -|+.
T Consensus 291 vKVI~ATNR~D~LDPALLRPGR~DRkIEfplPd~~gR~~Il~IHtrk-M~l~~dvd~----e~la~~~~g~sGAdlkaic 365 (406)
T COG1222 291 VKVIMATNRPDILDPALLRPGRFDRKIEFPLPDEEGRAEILKIHTRK-MNLADDVDL----ELLARLTEGFSGADLKAIC 365 (406)
T ss_pred eEEEEecCCccccChhhcCCCcccceeecCCCCHHHHHHHHHHHhhh-ccCccCcCH----HHHHHhcCCCchHHHHHHH
Confidence 688888866554321 11 1456777755555556666655532 222333444 55667777664 4555
Q ss_pred HHHHHh--hcCC---CHHHHHHHHhc
Q 047321 312 VIGNLL--RSKN---TAKEWHIILDS 332 (807)
Q Consensus 312 ~~~~~l--~~~~---~~~~w~~~~~~ 332 (807)
+=|+++ |..+ +.+.+....++
T Consensus 366 tEAGm~AiR~~R~~Vt~~DF~~Av~K 391 (406)
T COG1222 366 TEAGMFAIRERRDEVTMEDFLKAVEK 391 (406)
T ss_pred HHHhHHHHHhccCeecHHHHHHHHHH
Confidence 556664 3332 34555554443
No 486
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=96.83 E-value=0.015 Score=67.14 Aligned_cols=132 Identities=17% Similarity=0.189 Sum_probs=75.5
Q ss_pred CceEEEEEccCCChHHHHHHHHHcCcccc-c--ccc---eEEEEEeCC-----CCCHHH----------------HHHHH
Q 047321 130 GLDVISLVGLGGIGKTTLAQLAYNNDEVK-R--NFE---KVIWVCVSN-----TFEEIS----------------VAKAI 182 (807)
Q Consensus 130 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~-~--~f~---~~~wv~~~~-----~~~~~~----------------~~~~i 182 (807)
.-.+++|+|++|+|||||++.++...... + .|. .+.++.-.. ..++.+ ..+.+
T Consensus 349 ~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~~~~~~i~~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~ 428 (556)
T PRK11819 349 PGGIVGIIGPNGAGKSTLFKMITGQEQPDSGTIKIGETVKLAYVDQSRDALDPNKTVWEEISGGLDIIKVGNREIPSRAY 428 (556)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCceEEEEEeCchhhcCCCCCHHHHHHhhcccccccccHHHHHHH
Confidence 45689999999999999999998632110 0 111 122322110 011111 11234
Q ss_pred HHHcCCCC-------CCCccHHHHHHHHHHHHhCCceEEEEeCCCCC-CccChHHHHHhhcCCCCCcEEEEEcCCHHHHH
Q 047321 183 IEGLGVSA-------FGLSEFESLMKQIQEYITGKKIFLVLDDVWDG-DYKKWDPFFSCLKNGHHESKILITTHDRSVAL 254 (807)
Q Consensus 183 ~~~l~~~~-------~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~-~~~~~~~l~~~l~~~~~gs~IliTTR~~~v~~ 254 (807)
++.++... ......+...-.+.+.+..++-+++||++.+. |...-+.+...+.... | .||++|++.....
T Consensus 429 l~~~~l~~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~-~-tvi~vtHd~~~~~ 506 (556)
T PRK11819 429 VGRFNFKGGDQQKKVGVLSGGERNRLHLAKTLKQGGNVLLLDEPTNDLDVETLRALEEALLEFP-G-CAVVISHDRWFLD 506 (556)
T ss_pred HHhCCCChhHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhCC-C-eEEEEECCHHHHH
Confidence 44444321 01122333344567778889999999999765 5445555666665543 5 4899999988766
Q ss_pred HhCCCceEeC
Q 047321 255 QLGSIDIIPV 264 (807)
Q Consensus 255 ~~~~~~~~~l 264 (807)
.+.. +++.+
T Consensus 507 ~~~d-~i~~l 515 (556)
T PRK11819 507 RIAT-HILAF 515 (556)
T ss_pred HhCC-EEEEE
Confidence 6543 34444
No 487
>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.
Probab=96.83 E-value=0.0085 Score=60.22 Aligned_cols=56 Identities=18% Similarity=0.179 Sum_probs=38.0
Q ss_pred HHHHHHHHHhCCceEEEEeCCCCC-CccChHHHHHhhcCC--CCCcEEEEEcCCHHHHH
Q 047321 199 LMKQIQEYITGKKIFLVLDDVWDG-DYKKWDPFFSCLKNG--HHESKILITTHDRSVAL 254 (807)
Q Consensus 199 ~~~~l~~~l~~k~~LlVlDdv~~~-~~~~~~~l~~~l~~~--~~gs~IliTTR~~~v~~ 254 (807)
..-.+.+.+..++-++++|++... |...-..+...+... ..|..||++|++.++..
T Consensus 148 qrv~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sh~~~~~~ 206 (220)
T TIGR02982 148 QRVAIARALVHRPKLVLADEPTAALDSKSGRDVVELMQKLAREQGCTILIVTHDNRILD 206 (220)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHh
Confidence 344467777888999999998664 444444455555432 23677999999987653
No 488
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=96.83 E-value=0.011 Score=69.48 Aligned_cols=127 Identities=19% Similarity=0.189 Sum_probs=72.6
Q ss_pred CceEEEEEccCCChHHHHHHHHHcCccc-cc--ccc---eEEEEEeCC-----CCCHHHH----------------HHHH
Q 047321 130 GLDVISLVGLGGIGKTTLAQLAYNNDEV-KR--NFE---KVIWVCVSN-----TFEEISV----------------AKAI 182 (807)
Q Consensus 130 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~-~~--~f~---~~~wv~~~~-----~~~~~~~----------------~~~i 182 (807)
.-.+++|+|++|+|||||++.++..... .+ .|. .+.|+.-.. ..++.+. ...+
T Consensus 344 ~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~i~y~~q~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~ 423 (635)
T PRK11147 344 RGDKIALIGPNGCGKTTLLKLMLGQLQADSGRIHCGTKLEVAYFDQHRAELDPEKTVMDNLAEGKQEVMVNGRPRHVLGY 423 (635)
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCCcEEEEEeCcccccCCCCCHHHHHHhhcccccccchHHHHHHH
Confidence 4568999999999999999999864221 11 111 122332110 0112111 1122
Q ss_pred HHHcCCCC-------CCCccHHHHHHHHHHHHhCCceEEEEeCCCCC-CccChHHHHHhhcCCCCCcEEEEEcCCHHHHH
Q 047321 183 IEGLGVSA-------FGLSEFESLMKQIQEYITGKKIFLVLDDVWDG-DYKKWDPFFSCLKNGHHESKILITTHDRSVAL 254 (807)
Q Consensus 183 ~~~l~~~~-------~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~-~~~~~~~l~~~l~~~~~gs~IliTTR~~~v~~ 254 (807)
+..++... ......+...-.+.+.+..++-+|+||++.+. |....+.+...+... .| .||++|++.....
T Consensus 424 l~~~~l~~~~~~~~~~~LSgGekqRl~la~al~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~-~~-tvi~vSHd~~~~~ 501 (635)
T PRK11147 424 LQDFLFHPKRAMTPVKALSGGERNRLLLARLFLKPSNLLILDEPTNDLDVETLELLEELLDSY-QG-TVLLVSHDRQFVD 501 (635)
T ss_pred HHhcCCCHHHHhChhhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhC-CC-eEEEEECCHHHHH
Confidence 22222210 01122333344466777788899999999775 555556666666654 34 6999999988776
Q ss_pred HhCC
Q 047321 255 QLGS 258 (807)
Q Consensus 255 ~~~~ 258 (807)
.+..
T Consensus 502 ~~~d 505 (635)
T PRK11147 502 NTVT 505 (635)
T ss_pred HhcC
Confidence 5543
No 489
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=96.83 E-value=0.0054 Score=70.41 Aligned_cols=61 Identities=13% Similarity=0.148 Sum_probs=41.0
Q ss_pred HHHHHHHHHHHhCCceEEEEeCCCCC-CccChHHHHHhhcCC--CCCcEEEEEcCCHHHHHHhC
Q 047321 197 ESLMKQIQEYITGKKIFLVLDDVWDG-DYKKWDPFFSCLKNG--HHESKILITTHDRSVALQLG 257 (807)
Q Consensus 197 ~~~~~~l~~~l~~k~~LlVlDdv~~~-~~~~~~~l~~~l~~~--~~gs~IliTTR~~~v~~~~~ 257 (807)
+...-.+.+.+..++-+|+||+..+. |......+...+... ..|..||++|++.+.+..+.
T Consensus 173 q~qrv~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~ 236 (520)
T TIGR03269 173 EKQRVVLARQLAKEPFLFLADEPTGTLDPQTAKLVHNALEEAVKASGISMVLTSHWPEVIEDLS 236 (520)
T ss_pred HHHHHHHHHHHhcCCCEEEeeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhc
Confidence 33344567777888889999999765 444444454444432 23667999999988776543
No 490
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=96.82 E-value=0.013 Score=66.65 Aligned_cols=61 Identities=15% Similarity=0.218 Sum_probs=41.2
Q ss_pred HHHHHHHHHHHhCCceEEEEeCCCCC-CccChHHHHHhhcCC-CCCcEEEEEcCCHHHHHHhC
Q 047321 197 ESLMKQIQEYITGKKIFLVLDDVWDG-DYKKWDPFFSCLKNG-HHESKILITTHDRSVALQLG 257 (807)
Q Consensus 197 ~~~~~~l~~~l~~k~~LlVlDdv~~~-~~~~~~~l~~~l~~~-~~gs~IliTTR~~~v~~~~~ 257 (807)
+...-.+.+.+..++-+++||++... |......+...+... ..|..||++|++.+.+..+.
T Consensus 139 q~qrv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvii~tH~~~~~~~~~ 201 (491)
T PRK10982 139 QMQMIEIAKAFSYNAKIVIMDEPTSSLTEKEVNHLFTIIRKLKERGCGIVYISHKMEEIFQLC 201 (491)
T ss_pred HHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhC
Confidence 33445577778888999999999765 444445555555432 34667999999987665543
No 491
>PLN03073 ABC transporter F family; Provisional
Probab=96.82 E-value=0.012 Score=69.51 Aligned_cols=127 Identities=18% Similarity=0.181 Sum_probs=73.2
Q ss_pred CceEEEEEccCCChHHHHHHHHHcCcccc-c--ccc---eEEEEEeC--CCCCH----------------HHHHHHHHHH
Q 047321 130 GLDVISLVGLGGIGKTTLAQLAYNNDEVK-R--NFE---KVIWVCVS--NTFEE----------------ISVAKAIIEG 185 (807)
Q Consensus 130 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~-~--~f~---~~~wv~~~--~~~~~----------------~~~~~~i~~~ 185 (807)
.-.+++|+|++|+|||||++.+....... + .+. .+.++.-. ...+. ....+.++..
T Consensus 534 ~Ge~i~LvG~NGsGKSTLLk~L~Gll~p~~G~I~~~~~~~igyv~Q~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~L~~ 613 (718)
T PLN03073 534 LDSRIAMVGPNGIGKSTILKLISGELQPSSGTVFRSAKVRMAVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGS 613 (718)
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCCCCCCceEEECCceeEEEEeccccccCCcchhHHHHHHHhcCCCCHHHHHHHHHH
Confidence 44699999999999999999997632110 1 010 12222110 00011 1112334444
Q ss_pred cCCCC-------CCCccHHHHHHHHHHHHhCCceEEEEeCCCCC-CccChHHHHHhhcCCCCCcEEEEEcCCHHHHHHhC
Q 047321 186 LGVSA-------FGLSEFESLMKQIQEYITGKKIFLVLDDVWDG-DYKKWDPFFSCLKNGHHESKILITTHDRSVALQLG 257 (807)
Q Consensus 186 l~~~~-------~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~-~~~~~~~l~~~l~~~~~gs~IliTTR~~~v~~~~~ 257 (807)
++... ......+...-.+.+.+..++-+|+||++.+. |...-+.+...+... .| .||++|++......+.
T Consensus 614 ~gl~~~~~~~~~~~LSgGqkqRvaLAraL~~~p~lLLLDEPT~~LD~~s~~~l~~~L~~~-~g-tvIivSHd~~~i~~~~ 691 (718)
T PLN03073 614 FGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHILLLDEPSNHLDLDAVEALIQGLVLF-QG-GVLMVSHDEHLISGSV 691 (718)
T ss_pred CCCChHHhcCCccccCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHc-CC-EEEEEECCHHHHHHhC
Confidence 44321 11223344445567778889999999999765 444444565655543 35 6999999988776654
Q ss_pred C
Q 047321 258 S 258 (807)
Q Consensus 258 ~ 258 (807)
.
T Consensus 692 d 692 (718)
T PLN03073 692 D 692 (718)
T ss_pred C
Confidence 3
No 492
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=96.81 E-value=0.00028 Score=78.43 Aligned_cols=235 Identities=21% Similarity=0.279 Sum_probs=119.6
Q ss_pred EEEEeeccCCCCccccCCCCceeEEEeCCCCCCCCCCCCccccccccCcccceeeecc-ccCCccCeeEecCccCCCccc
Q 047321 471 HLGLKFEEGASFPMSIHGLNRLRTLLIYDQSPYNPSLSSSILPELFNKLACLRALVIR-QSLRTLEKFVVGGGVDGSNTC 549 (807)
Q Consensus 471 ~L~l~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~l~~~i~~LP~~i~~L~~L~~LdL~-~~L~~L~~l~~~~~~~~~~~~ 549 (807)
.+++..|.+...-..+..+++|..|++.++ .+..+...+..+.+|++|+++ +.+.
T Consensus 76 ~l~l~~n~i~~~~~~l~~~~~l~~l~l~~n-------~i~~i~~~l~~~~~L~~L~ls~N~I~----------------- 131 (414)
T KOG0531|consen 76 ELNLRQNLIAKILNHLSKLKSLEALDLYDN-------KIEKIENLLSSLVNLQVLDLSFNKIT----------------- 131 (414)
T ss_pred hhccchhhhhhhhcccccccceeeeecccc-------chhhcccchhhhhcchheeccccccc-----------------
Confidence 333555555433444677888888888887 777777668888888888887 1111
Q ss_pred cccccccccccCcccccCCCCCCChhHHHHhhccCCCCCCeEEEEeeccCCCcchhhhhchhhHHHHHHhhcCCCCCCCC
Q 047321 550 RLESLKNLQLLRECGIEGLGNVSHLDEAERLQLYNQQNLLRLRLRFGRVVDGEDEERRRKNEKDKQLLEALQPPLSHLPP 629 (807)
Q Consensus 550 ~i~~L~~L~~L~~L~i~~l~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~l~p~~~~lp~ 629 (807)
.+..+..|..|+.|.+.+ +.+. ....+..+.+|+.+++.+|.+. .++.
T Consensus 132 ~i~~l~~l~~L~~L~l~~----N~i~--~~~~~~~l~~L~~l~l~~n~i~--------------------------~ie~ 179 (414)
T KOG0531|consen 132 KLEGLSTLTLLKELNLSG----NLIS--DISGLESLKSLKLLDLSYNRIV--------------------------DIEN 179 (414)
T ss_pred cccchhhccchhhheecc----Ccch--hccCCccchhhhcccCCcchhh--------------------------hhhh
Confidence 122222233333333332 1100 0012333566777777766631 1222
Q ss_pred --CCCcc-cceEeccCCcCceeeCcccCCCCCCCCCCCCCCCCCCccccCcccccccccCCCccccchhhhccccCCCCC
Q 047321 630 --LGKLP-LKKLELRDLESVKRVGNEFLGIEESSEDDPSSSSSSPSVIAFPKLKSLEIDGMKELEEWNYRITRKENISIM 706 (807)
Q Consensus 630 --l~~L~-L~~L~L~~~~~l~~i~~~~~~~~~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~l 706 (807)
+..+. |+.+.+.++. +..+.. ...+..+..+.+.+ ..+... .++..+
T Consensus 180 ~~~~~~~~l~~l~l~~n~-i~~i~~---------------------~~~~~~l~~~~l~~-n~i~~~-------~~l~~~ 229 (414)
T KOG0531|consen 180 DELSELISLEELDLGGNS-IREIEG---------------------LDLLKKLVLLSLLD-NKISKL-------EGLNEL 229 (414)
T ss_pred hhhhhccchHHHhccCCc-hhcccc---------------------hHHHHHHHHhhccc-ccceec-------cCcccc
Confidence 34455 6666666532 222211 01222222233322 111111 122233
Q ss_pred Cc--ccEEEEccCCCCCCCcccccCCCCccEEeeccCcccccccccccccCCCCCCCCeeeeccCCCc---ccCCc-cCC
Q 047321 707 PR--LSSLQIMNCRKLKALPDYLLQTIALQKLSIYSCDLLEELPILEDRRTTDIPRLSSLAIWYCPKL---KVLPD-YLL 780 (807)
Q Consensus 707 ~~--L~~L~l~~c~~L~~lp~~l~~l~~L~~L~l~~c~~l~~lP~~~~~~~~~l~~L~~L~i~~c~~l---~~lP~-~l~ 780 (807)
+. |+.+++.+. .+..+|..+..+..+..|++.+. .+..+ ..+...+.+..+........ ..... ...
T Consensus 230 ~~~~L~~l~l~~n-~i~~~~~~~~~~~~l~~l~~~~n-~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 302 (414)
T KOG0531|consen 230 VMLHLRELYLSGN-RISRSPEGLENLKNLPVLDLSSN-RISNL-----EGLERLPKLSELWLNDNKLALSEAISQEYITS 302 (414)
T ss_pred hhHHHHHHhcccC-ccccccccccccccccccchhhc-ccccc-----ccccccchHHHhccCcchhcchhhhhcccccc
Confidence 33 888888887 45556566777888888888763 44333 12233344444444332211 11122 145
Q ss_pred CCCcccccccccchhhhh
Q 047321 781 RTTTLQAGEQDYENEKFS 798 (807)
Q Consensus 781 ~l~~L~~L~l~~~~~~~~ 798 (807)
....+....+..+++...
T Consensus 303 ~~~~~~~~~~~~~~~~~~ 320 (414)
T KOG0531|consen 303 AAPTLVTLTLELNPIRKI 320 (414)
T ss_pred ccccccccccccCccccc
Confidence 667788888888877654
No 493
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]
Probab=96.81 E-value=0.0037 Score=64.59 Aligned_cols=134 Identities=27% Similarity=0.330 Sum_probs=73.6
Q ss_pred cccccchHHHHHHHHhCCCCCCCCCceEEEEEccCCChHHHHHHHHHcCcc-cccccceEEE----EEeCCCC------C
Q 047321 106 VCGRVDEKNELLSKLLCGSSEQQKGLDVISLVGLGGIGKTTLAQLAYNNDE-VKRNFEKVIW----VCVSNTF------E 174 (807)
Q Consensus 106 ~vGR~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~-~~~~f~~~~w----v~~~~~~------~ 174 (807)
+-+|..+..--+++|+ ++....|.+.|.+|.|||.||-+..-.+. .++.|..++- +.+.+.. .
T Consensus 226 i~prn~eQ~~ALdlLl------d~dI~lV~L~G~AGtGKTlLALaAgleqv~e~~~y~KiiVtRp~vpvG~dIGfLPG~e 299 (436)
T COG1875 226 IRPRNAEQRVALDLLL------DDDIDLVSLGGKAGTGKTLLALAAGLEQVLERKRYRKIIVTRPTVPVGEDIGFLPGTE 299 (436)
T ss_pred cCcccHHHHHHHHHhc------CCCCCeEEeeccCCccHhHHHHHHHHHHHHHHhhhceEEEecCCcCcccccCcCCCch
Confidence 4556677777778887 45789999999999999999966532211 2334443321 1222221 1
Q ss_pred ---HHHHHHHHHHHcCCC-CCCCccHHHHHHHH---------HHHHhCC---ceEEEEeCCCCCCccChHHHHHhhcCCC
Q 047321 175 ---EISVAKAIIEGLGVS-AFGLSEFESLMKQI---------QEYITGK---KIFLVLDDVWDGDYKKWDPFFSCLKNGH 238 (807)
Q Consensus 175 ---~~~~~~~i~~~l~~~-~~~~~~~~~~~~~l---------~~~l~~k---~~LlVlDdv~~~~~~~~~~l~~~l~~~~ 238 (807)
..-.++.|..-+..- ..+......+...+ -.+++|+ +-++|+|+..+-.+ .+++..+...+
T Consensus 300 EeKm~PWmq~i~DnLE~L~~~~~~~~~~l~~~l~~~~iev~alt~IRGRSl~~~FiIIDEaQNLTp---heikTiltR~G 376 (436)
T COG1875 300 EEKMGPWMQAIFDNLEVLFSPNEPGDRALEEILSRGRIEVEALTYIRGRSLPDSFIIIDEAQNLTP---HELKTILTRAG 376 (436)
T ss_pred hhhccchHHHHHhHHHHHhcccccchHHHHHHHhccceeeeeeeeecccccccceEEEehhhccCH---HHHHHHHHhcc
Confidence 111233333322211 00111111111111 1234554 55899999976544 34566677789
Q ss_pred CCcEEEEEcC
Q 047321 239 HESKILITTH 248 (807)
Q Consensus 239 ~gs~IliTTR 248 (807)
.||||+.|--
T Consensus 377 ~GsKIVl~gd 386 (436)
T COG1875 377 EGSKIVLTGD 386 (436)
T ss_pred CCCEEEEcCC
Confidence 9999999864
No 494
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=96.81 E-value=0.012 Score=67.32 Aligned_cols=63 Identities=11% Similarity=0.170 Sum_probs=42.6
Q ss_pred HHHHHHHHHHHHhCCceEEEEeCCCCC-CccChHHHHHhhcCC-CCCcEEEEEcCCHHHHHHhCC
Q 047321 196 FESLMKQIQEYITGKKIFLVLDDVWDG-DYKKWDPFFSCLKNG-HHESKILITTHDRSVALQLGS 258 (807)
Q Consensus 196 ~~~~~~~l~~~l~~k~~LlVlDdv~~~-~~~~~~~l~~~l~~~-~~gs~IliTTR~~~v~~~~~~ 258 (807)
.+...-.+.+.+..++-+|+||+..+. |......+...+... ..|..||++|++.+.+..+..
T Consensus 400 Gq~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviivsHd~~~~~~~~d 464 (501)
T PRK11288 400 GNQQKAILGRWLSEDMKVILLDEPTRGIDVGAKHEIYNVIYELAAQGVAVLFVSSDLPEVLGVAD 464 (501)
T ss_pred HHHHHHHHHHHHccCCCEEEEcCCCCCCCHhHHHHHHHHHHHHHhCCCEEEEECCCHHHHHhhCC
Confidence 344445577778888999999999765 444455555554322 236679999999887765543
No 495
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=96.81 E-value=0.0053 Score=61.18 Aligned_cols=87 Identities=18% Similarity=0.284 Sum_probs=51.5
Q ss_pred CCceEEEEEccCCChHHHHHHHHHcCcccccccceEEEEEeCCCCCHHHHHHHHHHHc----CCC-----CCCCccHHHH
Q 047321 129 KGLDVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSNTFEEISVAKAIIEGL----GVS-----AFGLSEFESL 199 (807)
Q Consensus 129 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l----~~~-----~~~~~~~~~~ 199 (807)
...+++.|+|++|+|||++|..++.. ....-..++|++... ++...+.+ +++.. ... ..+..+....
T Consensus 10 ~~g~i~~i~G~~GsGKT~l~~~~~~~--~~~~g~~v~yi~~e~-~~~~rl~~-~~~~~~~~~~~~i~~~~~~~~~~~~~~ 85 (209)
T TIGR02237 10 ERGTITQIYGPPGSGKTNICMILAVN--AARQGKKVVYIDTEG-LSPERFKQ-IAEDRPERALSNFIVFEVFDFDEQGVA 85 (209)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH--HHhCCCeEEEEECCC-CCHHHHHH-HHHhChHHHhcCEEEEECCCHHHHHHH
Confidence 45789999999999999999887753 223345788998865 66555443 33221 000 0111122223
Q ss_pred HHHHHHHHhC-CceEEEEeCC
Q 047321 200 MKQIQEYITG-KKIFLVLDDV 219 (807)
Q Consensus 200 ~~~l~~~l~~-k~~LlVlDdv 219 (807)
...+.+.+.. +.-++|+|.+
T Consensus 86 ~~~l~~~~~~~~~~lvVIDSi 106 (209)
T TIGR02237 86 IQKTSKFIDRDSASLVVVDSF 106 (209)
T ss_pred HHHHHHHHhhcCccEEEEeCc
Confidence 4444444433 4567888876
No 496
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=96.80 E-value=0.013 Score=67.29 Aligned_cols=61 Identities=15% Similarity=0.168 Sum_probs=42.2
Q ss_pred HHHHHHHHHHHhCCceEEEEeCCCCC-CccChHHHHHhhcCC--CCCcEEEEEcCCHHHHHHhC
Q 047321 197 ESLMKQIQEYITGKKIFLVLDDVWDG-DYKKWDPFFSCLKNG--HHESKILITTHDRSVALQLG 257 (807)
Q Consensus 197 ~~~~~~l~~~l~~k~~LlVlDdv~~~-~~~~~~~l~~~l~~~--~~gs~IliTTR~~~v~~~~~ 257 (807)
+...-.+.+.+..++-+|++|++.+. |...-..+...+... ..|..||++|++.+.+..+.
T Consensus 432 q~qrv~laral~~~p~lLllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vsHd~~~~~~~~ 495 (520)
T TIGR03269 432 ERHRVALAQVLIKEPRIVILDEPTGTMDPITKVDVTHSILKAREEMEQTFIIVSHDMDFVLDVC 495 (520)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCHHHHHHhC
Confidence 33344567778889999999999765 555555566666432 23667999999988776544
No 497
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=96.80 E-value=0.012 Score=67.30 Aligned_cols=62 Identities=13% Similarity=0.195 Sum_probs=42.3
Q ss_pred HHHHHHHHHHHHhCCceEEEEeCCCCC-CccChHHHHHhhcCC-CCCcEEEEEcCCHHHHHHhC
Q 047321 196 FESLMKQIQEYITGKKIFLVLDDVWDG-DYKKWDPFFSCLKNG-HHESKILITTHDRSVALQLG 257 (807)
Q Consensus 196 ~~~~~~~l~~~l~~k~~LlVlDdv~~~-~~~~~~~l~~~l~~~-~~gs~IliTTR~~~v~~~~~ 257 (807)
.+...-.+.+.+..++-+|+||++.+. |......+...+... ..|..||++|++.+.+..++
T Consensus 407 G~kqrl~la~al~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~~g~tiIivsHd~~~i~~~~ 470 (510)
T PRK15439 407 GNQQKVLIAKCLEASPQLLIVDEPTRGVDVSARNDIYQLIRSIAAQNVAVLFISSDLEEIEQMA 470 (510)
T ss_pred HHHHHHHHHHHHhhCCCEEEECCCCcCcChhHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhC
Confidence 444455577777788899999999765 444555555555432 23667999999988776654
No 498
>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=96.80 E-value=0.0072 Score=61.23 Aligned_cols=128 Identities=23% Similarity=0.274 Sum_probs=74.4
Q ss_pred CceEEEEEccCCChHHHHHHHHHcCccc---ccccceEEEEEeCCC----------------CCHHHHHHHHHHHcCCC-
Q 047321 130 GLDVISLVGLGGIGKTTLAQLAYNNDEV---KRNFEKVIWVCVSNT----------------FEEISVAKAIIEGLGVS- 189 (807)
Q Consensus 130 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~---~~~f~~~~wv~~~~~----------------~~~~~~~~~i~~~l~~~- 189 (807)
.-.++++.|++|+|||||.+.++.=... +-.|+...|.++++. |.-..+.+.|+-.+...
T Consensus 27 ~Ge~vaLlGpSGaGKsTlLRiIAGLe~p~~G~I~~~~~~l~D~~~~~~~~R~VGfvFQ~YALF~HmtVa~NIAFGl~~~~ 106 (345)
T COG1118 27 SGELVALLGPSGAGKSTLLRIIAGLETPDAGRIRLNGRVLFDVSNLAVRDRKVGFVFQHYALFPHMTVADNIAFGLKVRK 106 (345)
T ss_pred CCcEEEEECCCCCcHHHHHHHHhCcCCCCCceEEECCEeccchhccchhhcceeEEEechhhcccchHHhhhhhcccccc
Confidence 3469999999999999999999752211 123455555554431 12223444444433221
Q ss_pred ----------------------C------CCCccHHHHHHHHHHHHhCCceEEEEeCCCCCCccChHH-HHHhhcCC--C
Q 047321 190 ----------------------A------FGLSEFESLMKQIQEYITGKKIFLVLDDVWDGDYKKWDP-FFSCLKNG--H 238 (807)
Q Consensus 190 ----------------------~------~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~-l~~~l~~~--~ 238 (807)
. .+........-.+.+.+.-.+-+|.||+....-...|.. ++..|... .
T Consensus 107 ~~p~~~~~r~rv~elL~lvqL~~la~ryP~QLSGGQrQRVALARALA~eP~vLLLDEPf~ALDa~vr~~lr~wLr~~~~~ 186 (345)
T COG1118 107 ERPSEAEIRARVEELLRLVQLEGLADRYPAQLSGGQRQRVALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRKLHDR 186 (345)
T ss_pred cCCChhhHHHHHHHHHHHhcccchhhcCchhcChHHHHHHHHHHHhhcCCCeEeecCCchhhhHHHHHHHHHHHHHHHHh
Confidence 0 111222222344677777888899999987653334433 55555432 3
Q ss_pred CCcEEEEEcCCHHHHHHhC
Q 047321 239 HESKILITTHDRSVALQLG 257 (807)
Q Consensus 239 ~gs~IliTTR~~~v~~~~~ 257 (807)
-|...+.+|+|..-+..+.
T Consensus 187 ~~~ttvfVTHD~eea~~la 205 (345)
T COG1118 187 LGVTTVFVTHDQEEALELA 205 (345)
T ss_pred hCceEEEEeCCHHHHHhhc
Confidence 3667888999887665544
No 499
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=96.80 E-value=0.0028 Score=81.61 Aligned_cols=60 Identities=22% Similarity=0.228 Sum_probs=41.0
Q ss_pred HHHHHHHHHHhCCceEEEEeCCCCC-CccChHHHHHhhcCCCCCcEEEEEcCCHHHHHHhC
Q 047321 198 SLMKQIQEYITGKKIFLVLDDVWDG-DYKKWDPFFSCLKNGHHESKILITTHDRSVALQLG 257 (807)
Q Consensus 198 ~~~~~l~~~l~~k~~LlVlDdv~~~-~~~~~~~l~~~l~~~~~gs~IliTTR~~~v~~~~~ 257 (807)
...-.+...+-+++-+++||+.... |...-..+...+.....|..||+||++.+.+..++
T Consensus 1067 KQRLsLArALi~~PkVLLLDEPTSGLDp~sr~~l~~lL~~l~~g~TIIltTHdmdea~~la 1127 (2272)
T TIGR01257 1067 QRKLSVAIAFVGDAKVVVLDEPTSGVDPYSRRSIWDLLLKYRSGRTIIMSTHHMDEADLLG 1127 (2272)
T ss_pred HHHHHHHHHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhC
Confidence 3344467778889999999999765 44333444444443345778999999988876554
No 500
>cd03291 ABCC_CFTR1 The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=96.79 E-value=0.014 Score=60.88 Aligned_cols=59 Identities=8% Similarity=-0.030 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHHhCCceEEEEeCCCCC-CccChHHHHHhh-cCCCCCcEEEEEcCCHHHHH
Q 047321 196 FESLMKQIQEYITGKKIFLVLDDVWDG-DYKKWDPFFSCL-KNGHHESKILITTHDRSVAL 254 (807)
Q Consensus 196 ~~~~~~~l~~~l~~k~~LlVlDdv~~~-~~~~~~~l~~~l-~~~~~gs~IliTTR~~~v~~ 254 (807)
.+...-.+.+.+..++-++++|++... |...-..+...+ .....+..||++|++.....
T Consensus 163 Gq~qrv~lAraL~~~p~iLiLDEPt~gLD~~~~~~l~~~ll~~~~~~~tIiiisH~~~~~~ 223 (282)
T cd03291 163 GQRARISLARAVYKDADLYLLDSPFGYLDVFTEKEIFESCVCKLMANKTRILVTSKMEHLK 223 (282)
T ss_pred HHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHhhCCCEEEEEeCChHHHH
Confidence 333445577778888999999999654 333333343322 22233567999999987654
Done!