Query 047321
Match_columns 807
No_of_seqs 499 out of 3919
Neff 9.5
Searched_HMMs 29240
Date Mon Mar 25 17:29:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047321.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/047321hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2a5y_B CED-4; apoptosis; HET: 100.0 4.3E-49 1.5E-53 451.4 22.4 316 107-450 131-473 (549)
2 1vt4_I APAF-1 related killer D 100.0 2.4E-39 8.1E-44 373.2 19.9 286 105-442 129-437 (1221)
3 3sfz_A APAF-1, apoptotic pepti 100.0 1.2E-37 4E-42 394.7 28.7 314 99-448 119-452 (1249)
4 1z6t_A APAF-1, apoptotic prote 100.0 1.4E-34 4.9E-39 336.3 27.7 308 101-446 121-450 (591)
5 4fcg_A Uncharacterized protein 99.8 2.7E-19 9.2E-24 191.1 17.0 223 466-795 80-313 (328)
6 4fmz_A Internalin; leucine ric 99.8 7.5E-19 2.5E-23 189.7 17.5 269 466-796 65-346 (347)
7 4fmz_A Internalin; leucine ric 99.8 2.3E-18 7.8E-23 185.9 18.9 275 466-803 43-331 (347)
8 2id5_A Lingo-1, leucine rich r 99.8 1.5E-18 5.2E-23 195.9 15.0 283 465-800 30-337 (477)
9 3rgz_A Protein brassinosteroid 99.8 8.7E-19 3E-23 209.3 13.3 98 702-803 627-724 (768)
10 4ecn_A Leucine-rich repeat pro 99.8 3.7E-18 1.3E-22 202.9 16.7 118 466-598 447-607 (876)
11 3v47_A TOLL-like receptor 5B a 99.8 1.5E-18 5E-23 194.8 11.6 305 465-800 28-412 (455)
12 4fcg_A Uncharacterized protein 99.8 3.3E-18 1.1E-22 182.7 13.3 214 488-800 79-294 (328)
13 3rgz_A Protein brassinosteroid 99.7 3.7E-18 1.3E-22 203.9 13.7 309 466-800 199-555 (768)
14 3o6n_A APL1; leucine-rich repe 99.7 7.1E-18 2.4E-22 185.1 14.6 294 467-798 45-354 (390)
15 1o6v_A Internalin A; bacterial 99.7 3E-17 1E-21 184.5 18.0 289 466-802 67-372 (466)
16 4eco_A Uncharacterized protein 99.7 4.4E-18 1.5E-22 198.6 10.6 297 466-796 248-600 (636)
17 3t6q_A CD180 antigen; protein- 99.7 8.3E-18 2.8E-22 195.9 12.7 286 468-800 255-564 (606)
18 1o6v_A Internalin A; bacterial 99.7 7E-17 2.4E-21 181.5 19.7 284 466-797 89-389 (466)
19 4ecn_A Leucine-rich repeat pro 99.7 1.8E-17 6E-22 197.1 13.8 296 466-796 490-840 (876)
20 3oja_B Anopheles plasmodium-re 99.7 7.3E-17 2.5E-21 187.1 17.7 148 635-799 213-361 (597)
21 3bz5_A Internalin-J, INLJ; leu 99.7 1.5E-16 5.3E-21 177.5 18.7 265 466-796 63-352 (457)
22 1ogq_A PGIP-2, polygalacturona 99.7 1.5E-17 5.3E-22 176.3 9.9 248 467-797 50-305 (313)
23 4eco_A Uncharacterized protein 99.7 3.8E-17 1.3E-21 190.7 14.0 273 467-795 305-631 (636)
24 3t6q_A CD180 antigen; protein- 99.7 6.9E-17 2.4E-21 188.1 16.0 119 465-598 31-165 (606)
25 3vq2_A TLR4, TOLL-like recepto 99.7 3.4E-17 1.2E-21 190.7 13.3 271 466-807 284-569 (606)
26 2z7x_B TOLL-like receptor 1, v 99.7 1.2E-16 3.9E-21 182.6 16.7 90 705-802 397-487 (520)
27 3vq2_A TLR4, TOLL-like recepto 99.7 1.2E-16 4.2E-21 186.0 17.2 93 702-798 419-512 (606)
28 3a79_B TLR6, VLRB.59, TOLL-lik 99.7 3E-16 1E-20 180.9 19.6 118 466-598 51-181 (562)
29 2id5_A Lingo-1, leucine rich r 99.7 1E-16 3.5E-21 180.8 14.0 275 470-797 14-310 (477)
30 3zyi_A Leucine-rich repeat-con 99.7 1.7E-16 5.7E-21 177.7 15.3 241 470-798 57-305 (452)
31 3zyj_A Leucine-rich repeat-con 99.7 2.1E-16 7.1E-21 176.3 14.8 241 470-798 46-294 (440)
32 3oja_B Anopheles plasmodium-re 99.7 4E-17 1.4E-21 189.3 9.2 272 467-797 51-338 (597)
33 1xku_A Decorin; proteoglycan, 99.7 1E-15 3.5E-20 163.7 18.9 265 466-794 51-330 (330)
34 3v47_A TOLL-like receptor 5B a 99.7 4.2E-16 1.4E-20 174.7 16.6 274 471-797 14-385 (455)
35 3g06_A SSPH2 (leucine-rich rep 99.7 1.6E-15 5.6E-20 174.4 20.8 237 466-799 60-300 (622)
36 3j0a_A TOLL-like receptor 5; m 99.7 1E-15 3.5E-20 184.8 19.7 123 465-598 22-160 (844)
37 2z81_A CD282 antigen, TOLL-lik 99.7 2E-16 6.8E-21 181.9 12.8 65 729-800 449-514 (549)
38 1w5s_A Origin recognition comp 99.7 7E-15 2.4E-19 162.5 24.1 301 103-421 21-372 (412)
39 3bz5_A Internalin-J, INLJ; leu 99.7 8.1E-16 2.8E-20 171.6 16.6 261 466-797 41-332 (457)
40 2z63_A TOLL-like receptor 4, v 99.7 6.2E-16 2.1E-20 178.7 15.9 93 703-800 441-535 (570)
41 2qen_A Walker-type ATPase; unk 99.7 6.5E-15 2.2E-19 158.8 22.6 294 101-442 9-349 (350)
42 2ft3_A Biglycan; proteoglycan, 99.6 2.5E-15 8.6E-20 160.8 18.9 263 466-794 53-331 (332)
43 2z80_A TOLL-like receptor 2, v 99.6 2.6E-16 9E-21 170.0 11.0 250 466-800 51-318 (353)
44 2z66_A Variable lymphocyte rec 99.6 7.1E-16 2.4E-20 163.1 12.7 251 471-800 11-265 (306)
45 1xku_A Decorin; proteoglycan, 99.6 2.2E-15 7.7E-20 161.1 16.7 256 467-797 31-307 (330)
46 1jl5_A Outer protein YOPM; leu 99.6 5.7E-16 2E-20 172.7 12.6 257 466-795 10-289 (454)
47 1jl5_A Outer protein YOPM; leu 99.6 4.1E-15 1.4E-19 165.8 19.4 263 467-797 111-410 (454)
48 4g8a_A TOLL-like receptor 4; l 99.6 1.4E-15 4.8E-20 178.0 15.8 115 674-798 466-582 (635)
49 3o53_A Protein LRIM1, AGAP0063 99.6 1.8E-16 6.1E-21 168.5 6.6 236 466-794 33-273 (317)
50 2z81_A CD282 antigen, TOLL-lik 99.6 1.4E-15 4.7E-20 174.9 14.2 122 466-598 25-160 (549)
51 1ziw_A TOLL-like receptor 3; i 99.6 1.3E-15 4.6E-20 179.8 14.2 120 466-598 24-157 (680)
52 2z7x_B TOLL-like receptor 1, v 99.6 1.8E-15 6.2E-20 172.6 13.5 118 466-598 20-150 (520)
53 2fna_A Conserved hypothetical 99.6 2.8E-14 9.7E-19 154.2 22.3 292 102-441 11-356 (357)
54 2z63_A TOLL-like receptor 4, v 99.6 6E-16 2.1E-20 178.8 9.2 238 467-776 282-535 (570)
55 3a79_B TLR6, VLRB.59, TOLL-lik 99.6 7.2E-15 2.4E-19 169.3 17.8 114 469-599 33-159 (562)
56 1ogq_A PGIP-2, polygalacturona 99.6 5.3E-16 1.8E-20 164.5 7.2 227 490-800 50-285 (313)
57 1ziw_A TOLL-like receptor 3; i 99.6 5.6E-15 1.9E-19 174.4 16.6 88 704-797 533-623 (680)
58 1ozn_A Reticulon 4 receptor; N 99.6 7.2E-15 2.5E-19 153.6 15.6 222 470-801 14-243 (285)
59 3oja_A Leucine-rich immune mol 99.6 9.4E-16 3.2E-20 172.7 8.8 232 466-791 33-270 (487)
60 3o6n_A APL1; leucine-rich repe 99.6 3.7E-15 1.3E-19 163.4 12.1 250 488-796 43-331 (390)
61 3j0a_A TOLL-like receptor 5; m 99.6 2.3E-14 7.8E-19 173.0 18.5 276 470-796 7-375 (844)
62 3zyj_A Leucine-rich repeat-con 99.6 2E-14 6.8E-19 160.2 15.6 221 492-797 45-269 (440)
63 3zyi_A Leucine-rich repeat-con 99.6 1.8E-14 6E-19 161.2 15.2 221 492-797 56-280 (452)
64 3g06_A SSPH2 (leucine-rich rep 99.6 2.4E-14 8.1E-19 164.7 15.8 218 465-780 79-305 (622)
65 4ay9_X Follicle-stimulating ho 99.5 1.8E-13 6E-18 147.5 19.0 238 470-793 12-256 (350)
66 1ozn_A Reticulon 4 receptor; N 99.5 1.1E-14 3.9E-19 152.1 9.1 246 465-794 30-285 (285)
67 2ft3_A Biglycan; proteoglycan, 99.5 3.6E-13 1.2E-17 144.0 20.1 257 467-797 33-308 (332)
68 2z66_A Variable lymphocyte rec 99.5 6.6E-14 2.3E-18 147.9 12.8 223 465-771 26-260 (306)
69 1p9a_G Platelet glycoprotein I 99.5 1.7E-13 5.7E-18 143.3 14.6 109 675-795 98-207 (290)
70 2z80_A TOLL-like receptor 2, v 99.5 2.9E-14 9.8E-19 154.0 8.4 232 466-775 75-317 (353)
71 1fnn_A CDC6P, cell division co 99.5 5.9E-12 2E-16 137.7 26.3 323 104-447 17-386 (389)
72 3oja_A Leucine-rich immune mol 99.5 1E-13 3.5E-18 156.1 11.8 216 488-796 32-250 (487)
73 1h6u_A Internalin H; cell adhe 99.5 1.9E-13 6.4E-18 144.3 12.9 194 466-777 40-234 (308)
74 3o53_A Protein LRIM1, AGAP0063 99.5 8.8E-14 3E-18 147.6 10.2 221 484-796 28-250 (317)
75 1wwl_A Monocyte differentiatio 99.5 1.1E-14 3.8E-19 154.3 2.9 247 469-797 45-310 (312)
76 2xwt_C Thyrotropin receptor; s 99.5 8.1E-13 2.8E-17 134.0 16.4 130 582-770 101-237 (239)
77 2o6q_A Variable lymphocyte rec 99.4 1E-12 3.6E-17 135.9 16.2 195 468-770 17-216 (270)
78 2qby_B CDC6 homolog 3, cell di 99.4 1.3E-11 4.5E-16 134.7 24.4 294 104-422 20-341 (384)
79 1h6u_A Internalin H; cell adhe 99.4 7.4E-13 2.5E-17 139.8 13.6 53 467-528 63-115 (308)
80 2xwt_C Thyrotropin receptor; s 99.4 1.1E-12 3.6E-17 133.1 14.1 209 474-794 18-237 (239)
81 2v1u_A Cell division control p 99.4 1.3E-11 4.4E-16 134.8 23.7 294 103-421 18-352 (387)
82 3rfs_A Internalin B, repeat mo 99.4 2.2E-12 7.6E-17 133.5 14.8 140 582-785 105-248 (272)
83 2o6q_A Variable lymphocyte rec 99.4 4.4E-12 1.5E-16 131.1 16.9 109 675-795 107-217 (270)
84 4glp_A Monocyte differentiatio 99.4 8.4E-13 2.9E-17 139.6 11.3 159 581-796 140-307 (310)
85 2z62_A TOLL-like receptor 4, v 99.4 1E-12 3.4E-17 136.5 10.9 85 674-769 146-234 (276)
86 2ast_B S-phase kinase-associat 99.4 2.8E-14 9.7E-19 152.9 -1.2 108 675-796 192-306 (336)
87 2qby_A CDC6 homolog 1, cell di 99.4 7.6E-12 2.6E-16 136.6 17.7 296 103-421 19-349 (386)
88 1p9a_G Platelet glycoprotein I 99.4 7.6E-12 2.6E-16 130.6 16.7 54 466-528 9-63 (290)
89 1z7x_W Ribonuclease inhibitor; 99.4 5.6E-15 1.9E-19 165.8 -8.7 299 466-796 2-354 (461)
90 3rfs_A Internalin B, repeat mo 99.3 3.8E-12 1.3E-16 131.8 12.8 181 550-800 55-239 (272)
91 2z62_A TOLL-like receptor 4, v 99.3 5.4E-12 1.8E-16 131.0 11.0 200 465-742 26-235 (276)
92 2ast_B S-phase kinase-associat 99.3 3.9E-13 1.3E-17 143.9 -0.6 225 467-793 47-282 (336)
93 2ca6_A RAN GTPase-activating p 99.3 3.1E-13 1E-17 147.8 -1.6 275 480-800 22-320 (386)
94 1njg_A DNA polymerase III subu 99.3 1.1E-10 3.7E-15 118.4 17.5 197 104-317 23-231 (250)
95 1z7x_W Ribonuclease inhibitor; 99.3 9.2E-14 3.2E-18 155.9 -6.2 119 674-797 281-412 (461)
96 4ezg_A Putative uncharacterize 99.3 6.8E-12 2.3E-16 123.0 7.9 152 584-797 42-195 (197)
97 1wwl_A Monocyte differentiatio 99.2 1.5E-11 5.3E-16 129.9 10.2 204 466-770 94-307 (312)
98 4ay9_X Follicle-stimulating ho 99.2 1.7E-11 5.9E-16 131.9 10.7 215 466-768 29-255 (350)
99 1m9s_A Internalin B; cell inva 99.2 2.8E-11 9.7E-16 138.9 12.8 108 582-748 105-213 (605)
100 4g8a_A TOLL-like receptor 4; l 99.2 5.1E-11 1.7E-15 139.1 15.1 129 630-770 441-578 (635)
101 1m9s_A Internalin B; cell inva 99.2 2.6E-11 9.1E-16 139.2 11.5 177 508-771 32-209 (605)
102 1h6t_A Internalin B; cell adhe 99.2 2.1E-11 7.3E-16 127.3 9.4 79 675-769 132-210 (291)
103 3cvr_A Invasion plasmid antige 99.2 6.7E-11 2.3E-15 134.3 13.9 186 468-782 60-253 (571)
104 2chg_A Replication factor C sm 99.2 5.3E-10 1.8E-14 111.5 18.8 185 104-314 17-204 (226)
105 1h6t_A Internalin B; cell adhe 99.2 4.6E-11 1.6E-15 124.8 10.7 171 466-748 45-216 (291)
106 3ogk_B Coronatine-insensitive 99.2 1.1E-12 3.6E-17 152.2 -2.1 289 466-797 191-527 (592)
107 3m19_A Variable lymphocyte rec 99.2 1.7E-10 5.9E-15 117.7 12.7 155 586-798 35-194 (251)
108 3cvr_A Invasion plasmid antige 99.1 6E-11 2E-15 134.7 9.7 32 710-742 210-241 (571)
109 3m19_A Variable lymphocyte rec 99.1 5.3E-10 1.8E-14 114.0 15.1 171 468-742 15-190 (251)
110 3goz_A Leucine-rich repeat-con 99.1 4.7E-12 1.6E-16 137.0 -0.9 265 472-798 3-299 (362)
111 4glp_A Monocyte differentiatio 99.1 1.1E-10 3.8E-15 123.2 7.6 207 489-770 90-305 (310)
112 2v70_A SLIT-2, SLIT homolog 2 99.1 7E-10 2.4E-14 110.6 12.6 136 635-802 34-172 (220)
113 1dce_A Protein (RAB geranylger 99.1 1.5E-12 5.1E-17 148.7 -8.9 102 674-790 460-567 (567)
114 1sxj_B Activator 1 37 kDa subu 99.0 2.4E-09 8.4E-14 113.5 16.2 181 104-316 21-212 (323)
115 2ca6_A RAN GTPase-activating p 99.0 3E-11 1E-15 131.9 0.6 246 466-772 31-316 (386)
116 3ogk_B Coronatine-insensitive 99.0 1.8E-11 6.3E-16 141.7 -1.5 108 674-792 433-547 (592)
117 4ezg_A Putative uncharacterize 99.0 3.7E-10 1.3E-14 110.5 8.1 131 631-797 41-173 (197)
118 2v9t_B SLIT homolog 2 protein 99.0 1.9E-09 6.5E-14 107.4 12.4 132 635-798 34-167 (220)
119 1xeu_A Internalin C; cellular 99.0 8.1E-10 2.8E-14 113.4 9.8 59 674-742 125-183 (263)
120 1xeu_A Internalin C; cellular 99.0 6.6E-10 2.2E-14 114.1 8.6 149 582-797 37-186 (263)
121 3e6j_A Variable lymphocyte rec 99.0 1.9E-09 6.5E-14 108.2 11.5 132 634-798 40-174 (229)
122 2o6s_A Variable lymphocyte rec 98.9 3.1E-09 1.1E-13 104.8 11.5 152 585-800 27-182 (208)
123 2p1m_B Transport inhibitor res 98.9 3.7E-11 1.2E-15 139.3 -4.3 86 705-796 430-519 (594)
124 2ell_A Acidic leucine-rich nuc 98.9 4.5E-09 1.5E-13 99.8 9.2 129 634-796 24-160 (168)
125 1w8a_A SLIT protein; signaling 98.9 4.8E-09 1.6E-13 102.0 9.5 117 676-802 28-145 (192)
126 2p1m_B Transport inhibitor res 98.9 1.5E-10 5.3E-15 134.0 -1.5 39 758-796 455-494 (594)
127 2xot_A Amphoterin-induced prot 98.8 3.9E-09 1.3E-13 113.8 9.0 154 586-798 39-204 (361)
128 1hqc_A RUVB; extended AAA-ATPa 98.8 9.3E-09 3.2E-13 109.1 11.1 264 104-419 12-324 (324)
129 2o6s_A Variable lymphocyte rec 98.8 1.8E-08 6E-13 99.4 12.2 135 633-799 27-164 (208)
130 3goz_A Leucine-rich repeat-con 98.8 2.8E-10 9.4E-15 123.0 -1.4 243 466-770 21-295 (362)
131 1a9n_A U2A', U2A'; complex (nu 98.8 3.2E-09 1.1E-13 101.7 6.0 141 629-803 14-160 (176)
132 2xot_A Amphoterin-induced prot 98.8 1.5E-08 5.2E-13 109.2 11.8 131 635-797 41-177 (361)
133 1iqp_A RFCS; clamp loader, ext 98.8 3.4E-08 1.2E-12 104.8 13.7 182 104-317 25-215 (327)
134 3e6j_A Variable lymphocyte rec 98.8 2.8E-08 9.6E-13 99.6 11.7 129 586-771 40-171 (229)
135 4b8c_D Glucose-repressible alc 98.8 4.6E-09 1.6E-13 123.7 6.5 114 673-800 220-333 (727)
136 3te6_A Regulatory protein SIR3 98.8 1E-07 3.5E-12 98.9 15.4 172 105-282 21-213 (318)
137 2je0_A Acidic leucine-rich nuc 98.7 1.1E-08 3.8E-13 94.9 6.4 126 633-792 16-149 (149)
138 1dce_A Protein (RAB geranylger 98.7 3.2E-10 1.1E-14 129.3 -5.0 108 677-800 441-550 (567)
139 2wfh_A SLIT homolog 2 protein 98.7 3.4E-08 1.2E-12 96.0 10.1 111 676-799 30-142 (193)
140 1jr3_A DNA polymerase III subu 98.7 2.1E-07 7E-12 100.8 15.7 195 104-314 16-221 (373)
141 4b8c_D Glucose-repressible alc 98.6 5.7E-09 1.9E-13 122.9 2.0 116 630-779 220-336 (727)
142 2o6r_A Variable lymphocyte rec 98.6 1.1E-07 3.9E-12 90.8 10.8 114 675-800 26-141 (177)
143 2ell_A Acidic leucine-rich nuc 98.6 4.4E-08 1.5E-12 92.9 7.6 110 675-799 22-136 (168)
144 2v9t_B SLIT homolog 2 protein 98.6 9.5E-08 3.2E-12 95.0 10.3 110 676-797 31-142 (220)
145 2v70_A SLIT-2, SLIT homolog 2 98.6 7.6E-08 2.6E-12 95.7 9.4 112 676-798 31-144 (220)
146 2je0_A Acidic leucine-rich nuc 98.6 4.3E-08 1.5E-12 90.8 6.1 111 675-800 15-130 (149)
147 1a9n_A U2A', U2A'; complex (nu 98.6 3E-08 1E-12 94.8 4.8 134 581-770 14-151 (176)
148 2chq_A Replication factor C sm 98.6 3E-07 1E-11 97.0 12.5 182 104-314 17-204 (319)
149 3bos_A Putative DNA replicatio 98.5 2.1E-07 7.2E-12 93.8 9.9 174 104-314 28-217 (242)
150 1jbk_A CLPB protein; beta barr 98.5 5E-07 1.7E-11 87.3 11.0 151 104-276 22-194 (195)
151 1sxj_E Activator 1 40 kDa subu 98.5 7.2E-07 2.5E-11 95.7 12.1 196 104-314 14-237 (354)
152 2r9u_A Variable lymphocyte rec 98.4 3.4E-07 1.2E-11 87.2 8.4 103 680-798 15-120 (174)
153 3g39_A Variable lymphocyte rec 98.4 3.7E-07 1.3E-11 86.6 8.4 106 678-798 10-117 (170)
154 1sxj_D Activator 1 41 kDa subu 98.4 2.3E-06 8E-11 91.6 15.6 194 104-313 37-234 (353)
155 3pvs_A Replication-associated 98.4 5.1E-06 1.7E-10 91.2 17.7 179 104-314 26-215 (447)
156 3pfi_A Holliday junction ATP-d 98.4 5.7E-06 1.9E-10 88.0 16.5 176 104-314 29-227 (338)
157 2z4s_A Chromosomal replication 98.4 2.4E-06 8.2E-11 94.0 13.4 182 131-333 130-332 (440)
158 3h4m_A Proteasome-activating n 98.4 4.7E-06 1.6E-10 86.3 15.0 186 103-313 16-230 (285)
159 1ds9_A Outer arm dynein; leuci 98.3 2.2E-09 7.5E-14 105.0 -10.7 131 630-796 44-185 (198)
160 1sxj_A Activator 1 95 kDa subu 98.3 3.5E-06 1.2E-10 94.9 12.9 196 104-316 39-255 (516)
161 2o6r_A Variable lymphocyte rec 98.3 3.3E-06 1.1E-10 80.5 10.8 110 634-774 28-139 (177)
162 2qz4_A Paraplegin; AAA+, SPG7, 98.3 2.2E-05 7.4E-10 80.0 17.1 188 104-314 6-222 (262)
163 3uk6_A RUVB-like 2; hexameric 98.2 2.7E-05 9.1E-10 83.8 18.5 195 104-313 44-302 (368)
164 3u61_B DNA polymerase accessor 98.2 2.3E-05 7.9E-10 82.7 16.5 175 104-316 26-219 (324)
165 1a5t_A Delta prime, HOLB; zinc 98.2 2.6E-05 8.8E-10 82.6 16.6 170 110-313 8-204 (334)
166 2wfh_A SLIT homolog 2 protein 98.2 3.7E-06 1.3E-10 81.5 8.6 103 680-797 13-116 (193)
167 3syl_A Protein CBBX; photosynt 98.2 1.2E-05 4.2E-10 84.2 13.2 162 105-282 32-219 (309)
168 1d2n_A N-ethylmaleimide-sensit 98.1 4.1E-05 1.4E-09 78.5 16.2 196 104-331 33-259 (272)
169 3sb4_A Hypothetical leucine ri 98.1 4.7E-06 1.6E-10 88.3 9.3 83 706-796 225-310 (329)
170 1w8a_A SLIT protein; signaling 98.1 3.9E-06 1.3E-10 81.2 7.5 103 680-798 11-117 (192)
171 3ec2_A DNA replication protein 98.1 3.5E-06 1.2E-10 80.6 7.0 121 109-249 19-142 (180)
172 1l8q_A Chromosomal replication 98.1 3.8E-05 1.3E-09 81.0 15.8 156 130-309 36-203 (324)
173 3sb4_A Hypothetical leucine ri 98.1 4E-06 1.4E-10 88.8 8.1 100 676-789 225-327 (329)
174 2r9u_A Variable lymphocyte rec 98.1 9.7E-06 3.3E-10 77.0 9.7 89 676-776 32-121 (174)
175 2p65_A Hypothetical protein PF 98.1 5.8E-06 2E-10 79.3 8.0 44 104-153 22-65 (187)
176 1ds9_A Outer arm dynein; leuci 98.1 5.5E-08 1.9E-12 95.0 -7.0 112 673-800 44-157 (198)
177 3g39_A Variable lymphocyte rec 98.0 1.4E-05 4.8E-10 75.5 9.7 84 676-770 29-113 (170)
178 1sxj_C Activator 1 40 kDa subu 98.0 5.2E-05 1.8E-09 80.5 15.1 175 104-310 25-208 (340)
179 3n70_A Transport activator; si 98.0 5E-06 1.7E-10 76.3 5.6 114 105-249 2-115 (145)
180 3b9p_A CG5977-PA, isoform A; A 98.0 0.00033 1.1E-08 72.7 20.3 184 104-314 21-233 (297)
181 2qp9_X Vacuolar protein sortin 98.0 0.00019 6.5E-09 76.5 18.2 186 104-315 51-262 (355)
182 3d8b_A Fidgetin-like protein 1 98.0 0.00018 6.3E-09 76.7 17.7 188 104-316 84-297 (357)
183 3eie_A Vacuolar protein sortin 98.0 0.00019 6.6E-09 75.4 17.4 184 104-315 18-229 (322)
184 1xwi_A SKD1 protein; VPS4B, AA 97.9 0.00056 1.9E-08 71.7 20.2 188 104-316 12-225 (322)
185 2ifg_A High affinity nerve gro 97.9 1.3E-05 4.5E-10 85.5 7.7 89 703-797 27-117 (347)
186 2w58_A DNAI, primosome compone 97.9 2E-05 6.9E-10 76.8 8.2 118 112-249 37-158 (202)
187 2gno_A DNA polymerase III, gam 97.8 5.6E-05 1.9E-09 78.4 10.7 148 108-280 1-152 (305)
188 3e4g_A ATP synthase subunit S, 97.8 5.9E-06 2E-10 77.4 2.7 66 675-746 83-154 (176)
189 3co5_A Putative two-component 97.8 1.3E-05 4.3E-10 73.4 4.4 109 105-248 5-114 (143)
190 2pze_A Cystic fibrosis transme 97.8 0.00026 8.9E-09 70.2 13.7 126 130-255 33-195 (229)
191 4fdw_A Leucine rich hypothetic 97.8 0.00028 9.6E-09 76.5 15.2 107 675-795 269-382 (401)
192 2kjq_A DNAA-related protein; s 97.8 1.5E-05 5.1E-10 73.3 4.3 87 131-249 36-124 (149)
193 1qvr_A CLPB protein; coiled co 97.8 5E-05 1.7E-09 91.0 9.9 155 104-280 170-345 (854)
194 2ra8_A Uncharacterized protein 97.8 3.9E-06 1.3E-10 89.5 0.2 65 729-795 250-319 (362)
195 3cf0_A Transitional endoplasmi 97.7 0.00047 1.6E-08 71.6 15.9 181 104-309 15-223 (301)
196 4g1u_C Hemin import ATP-bindin 97.7 0.00013 4.5E-09 74.0 10.8 129 130-258 36-216 (266)
197 1mv5_A LMRA, multidrug resista 97.7 0.00014 4.9E-09 72.8 10.9 61 195-255 142-203 (243)
198 1vpl_A ABC transporter, ATP-bi 97.7 0.00022 7.6E-09 71.8 12.1 128 130-257 40-213 (256)
199 3pxg_A Negative regulator of g 97.7 8.8E-05 3E-09 82.2 10.0 144 105-280 181-338 (468)
200 2cbz_A Multidrug resistance-as 97.7 0.00027 9.3E-09 70.4 12.4 125 130-254 30-193 (237)
201 3tui_C Methionine import ATP-b 97.7 0.00017 6E-09 75.9 11.3 129 130-258 53-232 (366)
202 3e4g_A ATP synthase subunit S, 97.7 2.1E-05 7.3E-10 73.6 3.7 88 678-774 62-154 (176)
203 1ji0_A ABC transporter; ATP bi 97.7 0.0002 6.7E-09 71.7 10.9 63 195-257 142-206 (240)
204 4fcw_A Chaperone protein CLPB; 97.7 0.0002 6.9E-09 74.8 11.6 135 105-249 18-169 (311)
205 3vfd_A Spastin; ATPase, microt 97.7 0.0012 4E-08 71.4 17.9 187 104-314 115-326 (389)
206 2bjv_A PSP operon transcriptio 97.7 0.00013 4.4E-09 74.4 9.7 160 104-277 6-191 (265)
207 2zan_A Vacuolar protein sortin 97.6 0.0011 3.9E-08 72.7 17.9 189 104-315 134-346 (444)
208 2ff7_A Alpha-hemolysin translo 97.6 0.00012 3.9E-09 73.6 8.8 61 194-254 147-208 (247)
209 2olj_A Amino acid ABC transpor 97.6 0.0004 1.4E-08 70.2 12.8 63 196-258 163-227 (263)
210 2onk_A Molybdate/tungstate ABC 97.6 0.00011 3.7E-09 73.3 8.3 127 130-257 24-194 (240)
211 1ofh_A ATP-dependent HSL prote 97.6 0.0006 2.1E-08 71.0 14.4 153 104-278 15-213 (310)
212 3tif_A Uncharacterized ABC tra 97.6 0.00034 1.2E-08 69.6 11.8 59 196-254 149-210 (235)
213 4fdw_A Leucine rich hypothetic 97.6 0.0006 2.1E-08 73.9 14.6 57 675-741 298-355 (401)
214 2zu0_C Probable ATP-dependent 97.6 0.00073 2.5E-08 68.6 14.2 60 196-255 168-229 (267)
215 2nq2_C Hypothetical ABC transp 97.6 0.0003 1E-08 70.8 11.2 129 130-258 30-197 (253)
216 1b0u_A Histidine permease; ABC 97.6 0.00029 9.8E-09 71.4 11.0 62 197-258 158-221 (262)
217 3hu3_A Transitional endoplasmi 97.6 0.0006 2E-08 75.5 14.4 185 104-313 204-414 (489)
218 1in4_A RUVB, holliday junction 97.6 0.00051 1.7E-08 72.5 13.4 177 104-313 25-222 (334)
219 1ojl_A Transcriptional regulat 97.6 0.00023 7.8E-09 74.0 10.4 160 104-278 2-188 (304)
220 2pjz_A Hypothetical protein ST 97.6 0.00033 1.1E-08 70.8 11.2 121 131-256 30-191 (263)
221 4b4t_J 26S protease regulatory 97.6 0.0078 2.7E-07 63.9 22.0 178 105-307 149-354 (405)
222 3gfo_A Cobalt import ATP-bindi 97.6 0.00015 5E-09 73.9 8.5 63 195-257 146-211 (275)
223 2pcj_A ABC transporter, lipopr 97.6 0.00044 1.5E-08 68.3 11.7 124 130-253 29-203 (224)
224 4b4t_K 26S protease regulatory 97.6 0.0023 7.8E-08 69.0 18.0 178 104-306 172-378 (428)
225 3rlf_A Maltose/maltodextrin im 97.5 0.00027 9.3E-09 74.9 10.6 129 130-258 28-202 (381)
226 1z47_A CYSA, putative ABC-tran 97.5 0.00036 1.2E-08 73.5 11.2 129 130-258 40-214 (355)
227 3fvq_A Fe(3+) IONS import ATP- 97.5 0.00045 1.5E-08 72.7 11.9 129 130-258 29-207 (359)
228 2ixe_A Antigen peptide transpo 97.5 0.00028 9.6E-09 71.8 10.1 60 196-255 160-222 (271)
229 3nh6_A ATP-binding cassette SU 97.5 0.00021 7.1E-09 73.8 9.1 61 195-255 193-254 (306)
230 1ye8_A Protein THEP1, hypothet 97.5 0.00061 2.1E-08 64.5 11.6 66 207-274 96-170 (178)
231 2bbs_A Cystic fibrosis transme 97.5 0.00079 2.7E-08 69.0 13.2 126 130-255 63-224 (290)
232 1sgw_A Putative ABC transporte 97.5 0.00047 1.6E-08 67.3 11.0 124 130-253 34-196 (214)
233 2qi9_C Vitamin B12 import ATP- 97.5 0.00033 1.1E-08 70.3 9.9 128 130-257 25-200 (249)
234 2it1_A 362AA long hypothetical 97.5 0.00047 1.6E-08 72.9 11.5 129 130-258 28-202 (362)
235 2cvh_A DNA repair and recombin 97.5 0.00037 1.3E-08 68.6 10.2 87 130-222 19-117 (220)
236 2yz2_A Putative ABC transporte 97.5 0.00046 1.6E-08 70.1 11.1 127 130-256 32-204 (266)
237 3d31_A Sulfate/molybdate ABC t 97.5 0.00035 1.2E-08 73.5 10.0 129 130-258 25-196 (348)
238 2yyz_A Sugar ABC transporter, 97.5 0.00049 1.7E-08 72.6 11.2 129 130-258 28-202 (359)
239 1g6h_A High-affinity branched- 97.5 0.00021 7.3E-09 72.2 7.9 61 197-257 158-220 (257)
240 2ghi_A Transport protein; mult 97.4 0.00057 1.9E-08 69.1 11.0 60 195-254 158-218 (260)
241 2ifg_A High affinity nerve gro 97.4 0.0003 1E-08 74.8 9.0 86 673-770 27-114 (347)
242 1oxx_K GLCV, glucose, ABC tran 97.4 0.00075 2.6E-08 71.2 11.8 129 130-258 30-209 (353)
243 2d2e_A SUFC protein; ABC-ATPas 97.4 0.00046 1.6E-08 69.4 9.7 60 197-256 148-209 (250)
244 1g29_1 MALK, maltose transport 97.4 0.00081 2.8E-08 71.5 11.8 129 130-258 28-208 (372)
245 1v43_A Sugar-binding transport 97.4 0.00015 5.1E-09 77.0 6.1 129 130-258 36-210 (372)
246 2c9o_A RUVB-like 1; hexameric 97.4 0.00098 3.3E-08 73.6 12.8 97 212-313 297-409 (456)
247 1lv7_A FTSH; alpha/beta domain 97.4 0.0036 1.2E-07 63.2 15.9 184 104-312 12-223 (257)
248 2ra8_A Uncharacterized protein 97.4 2.7E-05 9.3E-10 83.0 0.1 19 510-528 129-147 (362)
249 4b4t_L 26S protease subunit RP 97.3 0.0054 1.9E-07 66.2 17.7 179 104-307 181-387 (437)
250 3un9_A NLR family member X1; l 97.3 1.2E-05 4.2E-10 86.4 -3.0 35 706-741 182-221 (372)
251 1r6b_X CLPA protein; AAA+, N-t 97.3 0.0014 4.6E-08 77.7 14.2 157 104-280 186-362 (758)
252 3pxi_A Negative regulator of g 97.3 0.00037 1.2E-08 82.4 9.2 156 104-280 491-675 (758)
253 4gp7_A Metallophosphoesterase; 97.3 4.8E-05 1.6E-09 71.9 1.0 127 130-256 8-165 (171)
254 3pxi_A Negative regulator of g 97.3 0.00044 1.5E-08 81.8 9.4 147 104-280 180-338 (758)
255 2ce7_A Cell division protein F 97.2 0.0066 2.3E-07 66.6 16.4 179 104-307 16-221 (476)
256 4b4t_H 26S protease regulatory 97.2 0.0069 2.4E-07 65.3 15.8 177 105-306 210-414 (467)
257 2w0m_A SSO2452; RECA, SSPF, un 97.1 0.0012 4.3E-08 65.4 9.6 116 130-250 22-168 (235)
258 3b5x_A Lipid A export ATP-bind 97.1 0.0023 7.9E-08 72.9 12.4 57 199-255 487-544 (582)
259 1n0w_A DNA repair protein RAD5 97.1 0.0011 3.7E-08 66.3 8.6 120 130-250 23-174 (243)
260 3ozx_A RNAse L inhibitor; ATP 97.1 0.0018 6.2E-08 72.5 10.8 64 195-258 141-205 (538)
261 2ihy_A ABC transporter, ATP-bi 97.1 0.00071 2.4E-08 69.0 6.8 60 196-255 165-228 (279)
262 4b4t_M 26S protease regulatory 97.0 0.0038 1.3E-07 67.4 12.5 177 104-306 181-386 (434)
263 3j16_B RLI1P; ribosome recycli 97.0 0.002 6.8E-08 73.1 10.8 132 132-264 379-541 (608)
264 3gd7_A Fusion complex of cysti 97.0 0.0015 5.1E-08 69.8 9.0 60 194-253 157-217 (390)
265 3j16_B RLI1P; ribosome recycli 97.0 0.0039 1.3E-07 70.8 12.5 80 179-258 202-289 (608)
266 4b4t_I 26S protease regulatory 97.0 0.0085 2.9E-07 63.9 14.2 176 105-306 183-387 (437)
267 2qgz_A Helicase loader, putati 97.0 0.00049 1.7E-08 71.5 4.6 41 111-154 135-175 (308)
268 4fs7_A Uncharacterized protein 97.0 0.011 3.8E-07 63.8 15.6 80 705-793 295-376 (394)
269 2iw3_A Elongation factor 3A; a 96.9 0.0065 2.2E-07 72.0 14.0 123 130-258 460-613 (986)
270 1qvr_A CLPB protein; coiled co 96.9 0.0018 6.2E-08 77.4 9.6 135 105-249 559-710 (854)
271 2ehv_A Hypothetical protein PH 96.9 0.0011 3.8E-08 66.6 6.5 120 130-253 29-185 (251)
272 1r6b_X CLPA protein; AAA+, N-t 96.9 0.0035 1.2E-07 74.1 11.7 135 104-249 458-607 (758)
273 3bk7_A ABC transporter ATP-bin 96.9 0.0037 1.3E-07 71.1 11.2 128 131-258 382-540 (607)
274 3ozx_A RNAse L inhibitor; ATP 96.9 0.0012 4.1E-08 73.9 7.0 128 131-258 294-454 (538)
275 2r44_A Uncharacterized protein 96.8 0.0014 4.8E-08 69.0 7.1 150 104-281 27-199 (331)
276 2r62_A Cell division protease 96.8 0.00032 1.1E-08 71.6 2.0 157 104-280 11-196 (268)
277 1yqt_A RNAse L inhibitor; ATP- 96.8 0.0027 9.2E-08 71.3 9.5 128 131-258 312-470 (538)
278 3b60_A Lipid A export ATP-bind 96.8 0.0031 1.1E-07 71.9 10.2 59 196-254 484-543 (582)
279 2yl4_A ATP-binding cassette SU 96.8 0.0022 7.5E-08 73.3 8.8 60 196-255 487-547 (595)
280 1cr0_A DNA primase/helicase; R 96.8 0.0038 1.3E-07 64.5 9.9 117 130-250 34-197 (296)
281 3t15_A Ribulose bisphosphate c 96.8 0.015 5.3E-07 59.7 14.1 25 129-153 34-58 (293)
282 3m6a_A ATP-dependent protease 96.7 0.0033 1.1E-07 70.8 9.5 50 104-153 81-130 (543)
283 3qf4_B Uncharacterized ABC tra 96.7 0.002 6.7E-08 73.7 7.5 57 199-255 498-555 (598)
284 3qf4_A ABC transporter, ATP-bi 96.7 0.0057 1.9E-07 69.6 11.3 60 195-254 482-542 (587)
285 4a82_A Cystic fibrosis transme 96.7 0.0024 8.1E-08 72.7 7.6 59 196-254 481-540 (578)
286 1pzn_A RAD51, DNA repair and r 96.6 0.0049 1.7E-07 65.2 9.3 121 129-250 129-286 (349)
287 3un9_A NLR family member X1; l 96.6 7.7E-05 2.6E-09 80.1 -4.7 119 675-798 124-254 (372)
288 1yqt_A RNAse L inhibitor; ATP- 96.6 0.0038 1.3E-07 70.0 8.8 79 180-258 140-226 (538)
289 4a74_A DNA repair and recombin 96.6 0.0068 2.3E-07 59.8 9.7 47 130-176 24-74 (231)
290 2vhj_A Ntpase P4, P4; non- hyd 96.6 0.0012 4.2E-08 67.7 3.9 70 130-221 122-193 (331)
291 1um8_A ATP-dependent CLP prote 96.6 0.011 3.8E-07 63.3 11.8 23 131-153 72-94 (376)
292 1jr3_D DNA polymerase III, del 96.6 0.059 2E-06 56.7 17.2 158 130-313 17-184 (343)
293 3bk7_A ABC transporter ATP-bin 96.5 0.0051 1.7E-07 69.9 8.7 79 180-258 210-296 (607)
294 1io0_A Tropomodulin; LRR prote 96.5 0.00042 1.4E-08 66.2 -0.2 122 674-803 33-171 (185)
295 2eyu_A Twitching motility prot 96.4 0.0059 2E-07 61.6 7.8 112 130-253 24-136 (261)
296 2b8t_A Thymidine kinase; deoxy 96.4 0.0024 8.1E-08 62.5 4.6 113 130-250 11-126 (223)
297 2x8a_A Nuclear valosin-contain 96.4 0.034 1.2E-06 56.5 13.4 155 104-280 10-191 (274)
298 2iw3_A Elongation factor 3A; a 96.4 0.01 3.4E-07 70.4 10.5 61 195-257 904-965 (986)
299 1ypw_A Transitional endoplasmi 96.3 0.0064 2.2E-07 71.8 8.5 157 104-280 204-385 (806)
300 2px0_A Flagellar biosynthesis 96.3 0.029 9.9E-07 57.6 12.3 87 130-219 104-191 (296)
301 3cf2_A TER ATPase, transitiona 96.3 0.042 1.4E-06 63.9 14.9 179 104-307 204-407 (806)
302 3hr8_A Protein RECA; alpha and 96.3 0.013 4.6E-07 61.5 9.8 85 130-221 60-150 (356)
303 3jvv_A Twitching mobility prot 96.2 0.0021 7.3E-08 67.9 3.3 114 130-254 122-235 (356)
304 1v5w_A DMC1, meiotic recombina 96.2 0.022 7.7E-07 59.9 11.0 91 129-220 120-229 (343)
305 3lda_A DNA repair protein RAD5 96.2 0.013 4.3E-07 62.9 9.2 119 130-249 177-327 (400)
306 3ux8_A Excinuclease ABC, A sub 96.2 0.015 5E-07 67.5 10.5 68 195-264 205-276 (670)
307 1g5t_A COB(I)alamin adenosyltr 96.1 0.0064 2.2E-07 57.7 5.9 115 131-251 28-164 (196)
308 1nlf_A Regulatory protein REPA 96.1 0.0097 3.3E-07 60.8 7.7 120 130-253 29-184 (279)
309 4aby_A DNA repair protein RECN 96.1 0.012 4.1E-07 64.1 8.8 56 200-255 303-361 (415)
310 1rz3_A Hypothetical protein rb 96.0 0.0056 1.9E-07 59.2 5.2 42 109-153 3-44 (201)
311 4fs7_A Uncharacterized protein 96.0 0.054 1.8E-06 58.3 13.6 98 675-788 295-393 (394)
312 2z43_A DNA repair and recombin 95.9 0.02 6.9E-07 59.8 9.4 89 130-219 106-212 (324)
313 2dr3_A UPF0273 protein PH0284; 95.9 0.035 1.2E-06 55.2 10.5 116 130-250 22-173 (247)
314 3rw6_A Nuclear RNA export fact 95.9 0.0034 1.2E-07 63.2 2.9 80 705-789 168-257 (267)
315 2i1q_A DNA repair and recombin 95.8 0.019 6.5E-07 60.0 8.5 89 130-219 97-213 (322)
316 2pt7_A CAG-ALFA; ATPase, prote 95.8 0.0099 3.4E-07 62.2 6.2 107 131-252 171-277 (330)
317 2zr9_A Protein RECA, recombina 95.8 0.026 9E-07 59.4 9.4 85 130-221 60-150 (349)
318 3g5u_A MCG1178, multidrug resi 95.8 0.033 1.1E-06 69.3 11.8 67 196-264 530-597 (1284)
319 3thx_A DNA mismatch repair pro 95.8 0.01 3.5E-07 70.5 6.8 117 130-256 661-791 (934)
320 3tqc_A Pantothenate kinase; bi 95.6 0.024 8.1E-07 58.7 8.2 46 106-153 69-114 (321)
321 4f4c_A Multidrug resistance pr 95.6 0.04 1.4E-06 68.8 11.7 51 201-251 1226-1277(1321)
322 1xp8_A RECA protein, recombina 95.6 0.041 1.4E-06 58.2 9.9 84 130-220 73-162 (366)
323 1u94_A RECA protein, recombina 95.6 0.032 1.1E-06 58.8 9.0 84 130-220 62-151 (356)
324 3c8u_A Fructokinase; YP_612366 95.5 0.0087 3E-07 58.1 4.1 38 112-153 7-44 (208)
325 3io5_A Recombination and repai 95.5 0.046 1.6E-06 55.8 9.4 82 133-221 30-122 (333)
326 2dhr_A FTSH; AAA+ protein, hex 95.5 0.13 4.4E-06 56.7 13.8 176 103-307 30-236 (499)
327 4gt6_A Cell surface protein; l 95.4 0.27 9.2E-06 52.7 16.1 85 704-797 285-371 (394)
328 4f4c_A Multidrug resistance pr 95.4 0.056 1.9E-06 67.5 11.9 57 196-252 558-615 (1321)
329 2ewv_A Twitching motility prot 95.3 0.034 1.2E-06 59.2 8.5 110 130-253 135-247 (372)
330 3g5u_A MCG1178, multidrug resi 95.3 0.039 1.3E-06 68.6 9.9 60 195-254 1174-1234(1284)
331 1ewq_A DNA mismatch repair pro 95.2 0.027 9.4E-07 65.5 7.9 108 131-255 576-703 (765)
332 1zp6_A Hypothetical protein AT 95.2 0.011 3.7E-07 56.5 3.8 25 130-154 8-32 (191)
333 3ux8_A Excinuclease ABC, A sub 95.2 0.046 1.6E-06 63.3 9.5 68 195-264 546-618 (670)
334 1vma_A Cell division protein F 95.2 0.08 2.7E-06 54.4 10.3 106 112-220 83-196 (306)
335 3e70_C DPA, signal recognition 95.1 0.12 4E-06 53.8 11.5 25 129-153 127-151 (328)
336 3ice_A Transcription terminati 95.0 0.025 8.6E-07 59.2 6.0 97 114-219 162-270 (422)
337 1kgd_A CASK, peripheral plasma 95.0 0.013 4.4E-07 55.4 3.3 24 130-153 4-27 (180)
338 3thx_B DNA mismatch repair pro 94.9 0.045 1.5E-06 64.8 8.3 47 208-254 750-800 (918)
339 3tr0_A Guanylate kinase, GMP k 94.8 0.015 5.1E-07 56.2 3.5 23 131-153 7-29 (205)
340 2vf7_A UVRA2, excinuclease ABC 94.8 0.057 1.9E-06 63.3 8.7 66 197-264 735-805 (842)
341 3uie_A Adenylyl-sulfate kinase 94.8 0.018 6.1E-07 55.5 3.9 24 130-153 24-47 (200)
342 3a00_A Guanylate kinase, GMP k 94.8 0.012 4.1E-07 56.0 2.6 22 132-153 2-23 (186)
343 1htw_A HI0065; nucleotide-bind 94.7 0.018 6.3E-07 52.9 3.7 24 130-153 32-55 (158)
344 1tf7_A KAIC; homohexamer, hexa 94.7 0.023 8E-07 63.7 5.2 118 130-252 38-187 (525)
345 1qhx_A CPT, protein (chloramph 94.7 0.014 4.9E-07 54.8 2.9 22 132-153 4-25 (178)
346 3lw7_A Adenylate kinase relate 94.7 0.015 5.1E-07 54.4 3.0 20 132-151 2-21 (179)
347 3dm5_A SRP54, signal recogniti 94.7 0.52 1.8E-05 50.8 15.3 24 130-153 99-122 (443)
348 3asz_A Uridine kinase; cytidin 94.6 0.018 6.1E-07 55.9 3.6 24 130-153 5-28 (211)
349 3kb2_A SPBC2 prophage-derived 94.6 0.015 5.2E-07 54.2 2.9 22 132-153 2-23 (173)
350 1tf7_A KAIC; homohexamer, hexa 94.6 0.025 8.7E-07 63.4 5.1 115 130-250 280-417 (525)
351 3vaa_A Shikimate kinase, SK; s 94.6 0.016 5.6E-07 55.7 3.1 24 130-153 24-47 (199)
352 2orw_A Thymidine kinase; TMTK, 94.6 0.0032 1.1E-07 59.9 -2.1 22 132-153 4-25 (184)
353 2bdt_A BH3686; alpha-beta prot 94.6 0.019 6.4E-07 54.7 3.4 22 132-153 3-24 (189)
354 3tau_A Guanylate kinase, GMP k 94.5 0.019 6.5E-07 55.7 3.5 25 130-154 7-31 (208)
355 1znw_A Guanylate kinase, GMP k 94.5 0.019 6.3E-07 55.7 3.3 24 130-153 19-42 (207)
356 1kag_A SKI, shikimate kinase I 94.5 0.015 5E-07 54.5 2.5 22 132-153 5-26 (173)
357 4eun_A Thermoresistant glucoki 94.5 0.019 6.3E-07 55.4 3.3 24 130-153 28-51 (200)
358 1gvn_B Zeta; postsegregational 94.5 0.029 1E-06 57.4 4.9 40 113-153 16-55 (287)
359 1odf_A YGR205W, hypothetical 3 94.5 0.021 7.2E-07 58.4 3.8 25 129-153 29-53 (290)
360 3rw6_A Nuclear RNA export fact 94.5 0.02 6.9E-07 57.6 3.6 86 675-766 168-258 (267)
361 3bh0_A DNAB-like replicative h 94.4 0.24 8.3E-06 51.2 11.9 53 130-186 67-119 (315)
362 1lvg_A Guanylate kinase, GMP k 94.4 0.016 5.4E-07 55.8 2.6 23 131-153 4-26 (198)
363 3nbx_X ATPase RAVA; AAA+ ATPas 94.4 0.022 7.6E-07 62.9 3.9 42 105-154 23-64 (500)
364 1ly1_A Polynucleotide kinase; 94.4 0.021 7.1E-07 53.7 3.2 22 132-153 3-24 (181)
365 3kl4_A SRP54, signal recogniti 94.3 0.29 9.9E-06 52.7 12.4 24 130-153 96-119 (433)
366 1knq_A Gluconate kinase; ALFA/ 94.3 0.026 9E-07 52.8 3.8 24 130-153 7-30 (175)
367 2yhs_A FTSY, cell division pro 94.3 0.1 3.5E-06 56.8 8.8 43 129-174 291-333 (503)
368 2ga8_A Hypothetical 39.9 kDa p 94.3 0.033 1.1E-06 58.0 4.7 45 107-153 2-46 (359)
369 1sky_E F1-ATPase, F1-ATP synth 94.2 0.086 2.9E-06 57.1 8.0 98 116-219 141-254 (473)
370 2j41_A Guanylate kinase; GMP, 94.2 0.025 8.4E-07 54.6 3.5 25 130-154 5-29 (207)
371 3aez_A Pantothenate kinase; tr 94.2 0.026 8.9E-07 58.4 3.7 25 129-153 88-112 (312)
372 3trf_A Shikimate kinase, SK; a 94.1 0.023 7.8E-07 53.8 2.9 23 131-153 5-27 (185)
373 1z6g_A Guanylate kinase; struc 94.1 0.021 7.2E-07 55.8 2.8 24 130-153 22-45 (218)
374 1s96_A Guanylate kinase, GMP k 94.1 0.025 8.7E-07 55.2 3.3 24 130-153 15-38 (219)
375 2jeo_A Uridine-cytidine kinase 94.1 0.03 1E-06 55.9 3.8 24 130-153 24-47 (245)
376 2p5t_B PEZT; postsegregational 94.1 0.035 1.2E-06 55.7 4.3 40 113-153 15-54 (253)
377 1sq5_A Pantothenate kinase; P- 94.0 0.051 1.8E-06 56.2 5.6 25 129-153 78-102 (308)
378 2qt1_A Nicotinamide riboside k 94.0 0.032 1.1E-06 53.9 3.8 25 129-153 19-43 (207)
379 2qor_A Guanylate kinase; phosp 94.0 0.023 7.8E-07 54.9 2.7 24 130-153 11-34 (204)
380 1ex7_A Guanylate kinase; subst 94.0 0.021 7.2E-07 54.0 2.3 22 132-153 2-23 (186)
381 3hws_A ATP-dependent CLP prote 94.0 0.036 1.2E-06 59.0 4.4 49 105-153 16-73 (363)
382 3t61_A Gluconokinase; PSI-biol 94.0 0.02 6.8E-07 55.2 2.2 23 131-153 18-40 (202)
383 2rhm_A Putative kinase; P-loop 94.0 0.03 1E-06 53.3 3.5 24 130-153 4-27 (193)
384 2bbw_A Adenylate kinase 4, AK4 94.0 0.028 9.5E-07 56.1 3.3 24 130-153 26-49 (246)
385 3ney_A 55 kDa erythrocyte memb 93.9 0.029 1E-06 53.5 3.3 24 130-153 18-41 (197)
386 2ck3_D ATP synthase subunit be 93.9 0.21 7.3E-06 53.9 10.2 99 115-219 142-262 (482)
387 2o8b_B DNA mismatch repair pro 93.9 0.064 2.2E-06 64.6 6.8 53 205-258 863-920 (1022)
388 1ls1_A Signal recognition part 93.9 0.19 6.5E-06 51.5 9.5 87 130-219 97-189 (295)
389 2yvu_A Probable adenylyl-sulfa 93.8 0.039 1.3E-06 52.3 3.9 24 130-153 12-35 (186)
390 1zu4_A FTSY; GTPase, signal re 93.8 0.2 7E-06 51.8 9.7 25 129-153 103-127 (320)
391 1nks_A Adenylate kinase; therm 93.8 0.03 1E-06 53.2 3.2 22 132-153 2-23 (194)
392 2r6f_A Excinuclease ABC subuni 93.8 0.17 5.9E-06 59.5 9.9 66 197-264 850-920 (972)
393 1jjv_A Dephospho-COA kinase; P 93.8 0.034 1.2E-06 53.7 3.5 22 132-153 3-24 (206)
394 2ze6_A Isopentenyl transferase 93.8 0.031 1E-06 56.1 3.2 22 132-153 2-23 (253)
395 2if2_A Dephospho-COA kinase; a 93.7 0.029 1E-06 54.0 3.0 22 132-153 2-23 (204)
396 3pih_A Uvrabc system protein A 93.7 0.53 1.8E-05 55.7 13.9 69 194-264 807-880 (916)
397 1rj9_A FTSY, signal recognitio 93.6 0.036 1.2E-06 57.1 3.6 24 130-153 101-124 (304)
398 3iij_A Coilin-interacting nucl 93.6 0.029 9.8E-07 52.9 2.6 24 130-153 10-33 (180)
399 1cke_A CK, MSSA, protein (cyti 93.6 0.034 1.2E-06 54.6 3.2 22 132-153 6-27 (227)
400 1fx0_B ATP synthase beta chain 93.6 0.14 4.9E-06 55.4 8.2 99 115-219 154-275 (498)
401 1kht_A Adenylate kinase; phosp 93.6 0.033 1.1E-06 52.9 3.0 22 132-153 4-25 (192)
402 1uf9_A TT1252 protein; P-loop, 93.6 0.039 1.3E-06 53.0 3.5 25 129-153 6-30 (203)
403 2i3b_A HCR-ntpase, human cance 93.5 0.03 1E-06 53.2 2.6 22 132-153 2-23 (189)
404 4akg_A Glutathione S-transfera 93.5 0.87 3E-05 60.1 16.7 227 134-416 1270-1537(2695)
405 1y63_A LMAJ004144AAA protein; 93.5 0.038 1.3E-06 52.3 3.2 24 130-153 9-32 (184)
406 4a1f_A DNAB helicase, replicat 93.5 0.22 7.6E-06 51.8 9.3 53 130-186 45-97 (338)
407 2ffh_A Protein (FFH); SRP54, s 93.5 0.29 1E-05 52.6 10.4 24 130-153 97-120 (425)
408 2jaq_A Deoxyguanosine kinase; 93.4 0.035 1.2E-06 53.3 3.0 21 133-153 2-22 (205)
409 1via_A Shikimate kinase; struc 93.4 0.03 1E-06 52.5 2.3 21 133-153 6-26 (175)
410 1ukz_A Uridylate kinase; trans 93.4 0.046 1.6E-06 52.6 3.7 25 129-153 13-37 (203)
411 4e22_A Cytidylate kinase; P-lo 93.4 0.042 1.4E-06 55.0 3.4 24 130-153 26-49 (252)
412 1wb9_A DNA mismatch repair pro 93.4 0.14 4.9E-06 59.9 8.4 24 130-153 606-629 (800)
413 3b85_A Phosphate starvation-in 93.3 0.029 1E-06 54.2 2.2 45 206-254 118-162 (208)
414 3fwy_A Light-independent proto 93.3 0.044 1.5E-06 56.7 3.6 25 129-153 46-70 (314)
415 2c95_A Adenylate kinase 1; tra 93.3 0.042 1.4E-06 52.5 3.2 24 130-153 8-31 (196)
416 1g8p_A Magnesium-chelatase 38 93.3 0.029 9.9E-07 59.3 2.3 44 104-153 24-67 (350)
417 1tev_A UMP-CMP kinase; ploop, 93.3 0.043 1.5E-06 52.3 3.3 23 131-153 3-25 (196)
418 3b9q_A Chloroplast SRP recepto 93.3 0.046 1.6E-06 56.2 3.6 24 130-153 99-122 (302)
419 1zuh_A Shikimate kinase; alpha 93.3 0.04 1.4E-06 51.2 2.9 24 130-153 6-29 (168)
420 3lnc_A Guanylate kinase, GMP k 93.2 0.029 9.8E-07 55.4 1.9 23 131-153 27-50 (231)
421 1uj2_A Uridine-cytidine kinase 93.2 0.045 1.5E-06 54.8 3.4 25 129-153 20-44 (252)
422 1xjc_A MOBB protein homolog; s 93.2 0.046 1.6E-06 50.6 3.2 24 130-153 3-26 (169)
423 3cm0_A Adenylate kinase; ATP-b 93.2 0.046 1.6E-06 51.7 3.3 23 131-153 4-26 (186)
424 1q57_A DNA primase/helicase; d 93.1 0.25 8.7E-06 54.9 9.8 51 130-183 241-291 (503)
425 2hf9_A Probable hydrogenase ni 93.1 0.059 2E-06 52.7 4.1 25 130-154 37-61 (226)
426 3l0o_A Transcription terminati 93.1 0.036 1.2E-06 57.9 2.5 37 112-153 161-197 (427)
427 2pez_A Bifunctional 3'-phospho 93.1 0.052 1.8E-06 51.0 3.4 24 130-153 4-27 (179)
428 2f1r_A Molybdopterin-guanine d 93.1 0.033 1.1E-06 51.9 2.0 22 132-153 3-24 (171)
429 3umf_A Adenylate kinase; rossm 93.1 0.052 1.8E-06 52.7 3.4 25 129-153 27-51 (217)
430 2xxa_A Signal recognition part 93.1 0.31 1.1E-05 52.7 9.9 41 113-153 79-122 (433)
431 1j8m_F SRP54, signal recogniti 93.0 0.25 8.5E-06 50.6 8.6 88 131-220 98-190 (297)
432 2zts_A Putative uncharacterize 93.0 0.13 4.5E-06 51.0 6.5 116 130-249 29-181 (251)
433 3a4m_A L-seryl-tRNA(SEC) kinas 93.0 0.051 1.8E-06 54.7 3.4 23 131-153 4-26 (260)
434 2iyv_A Shikimate kinase, SK; t 93.0 0.036 1.2E-06 52.4 2.1 22 132-153 3-24 (184)
435 2plr_A DTMP kinase, probable t 92.9 0.054 1.9E-06 52.4 3.4 23 131-153 4-26 (213)
436 1e6c_A Shikimate kinase; phosp 92.9 0.041 1.4E-06 51.3 2.3 22 132-153 3-24 (173)
437 2grj_A Dephospho-COA kinase; T 92.8 0.061 2.1E-06 51.2 3.5 25 129-153 10-34 (192)
438 2bwj_A Adenylate kinase 5; pho 92.8 0.049 1.7E-06 52.1 2.9 23 131-153 12-34 (199)
439 2cdn_A Adenylate kinase; phosp 92.8 0.057 1.9E-06 51.9 3.4 24 130-153 19-42 (201)
440 1qf9_A UMP/CMP kinase, protein 92.8 0.055 1.9E-06 51.4 3.2 24 130-153 5-28 (194)
441 2pt5_A Shikimate kinase, SK; a 92.7 0.054 1.9E-06 50.2 3.0 21 133-153 2-22 (168)
442 2j37_W Signal recognition part 92.7 1.1 3.7E-05 49.3 13.6 25 129-153 99-123 (504)
443 1io0_A Tropomodulin; LRR prote 92.7 0.038 1.3E-06 52.4 1.8 114 466-598 35-163 (185)
444 2wsm_A Hydrogenase expression/ 92.6 0.064 2.2E-06 52.3 3.5 41 108-154 13-53 (221)
445 2r9v_A ATP synthase subunit al 92.6 0.18 6.3E-06 54.7 7.2 96 115-219 164-276 (515)
446 2og2_A Putative signal recogni 92.6 0.065 2.2E-06 56.4 3.6 24 130-153 156-179 (359)
447 2ygr_A Uvrabc system protein A 92.6 0.2 6.7E-06 59.3 8.0 67 196-264 867-938 (993)
448 3zvl_A Bifunctional polynucleo 92.5 0.41 1.4E-05 51.7 10.0 24 130-153 257-280 (416)
449 2vli_A Antibiotic resistance p 92.5 0.041 1.4E-06 51.8 1.8 23 131-153 5-27 (183)
450 1ixz_A ATP-dependent metallopr 92.5 0.053 1.8E-06 54.3 2.8 148 134-307 52-221 (254)
451 2pbr_A DTMP kinase, thymidylat 92.5 0.059 2E-06 51.2 3.0 21 133-153 2-22 (195)
452 2qe7_A ATP synthase subunit al 92.5 0.19 6.6E-06 54.5 7.2 96 115-219 151-263 (502)
453 3llm_A ATP-dependent RNA helic 92.5 0.21 7.1E-06 49.2 7.1 32 113-152 66-97 (235)
454 1nn5_A Similar to deoxythymidy 92.4 0.067 2.3E-06 51.9 3.3 24 130-153 8-31 (215)
455 1aky_A Adenylate kinase; ATP:A 92.4 0.065 2.2E-06 52.3 3.1 23 131-153 4-26 (220)
456 2wwf_A Thymidilate kinase, put 92.4 0.064 2.2E-06 51.9 3.1 24 130-153 9-32 (212)
457 1gtv_A TMK, thymidylate kinase 92.3 0.037 1.3E-06 53.7 1.3 21 133-153 2-22 (214)
458 2v9p_A Replication protein E1; 92.3 0.069 2.4E-06 54.7 3.3 24 130-153 125-148 (305)
459 3tlx_A Adenylate kinase 2; str 92.3 0.079 2.7E-06 52.7 3.7 24 130-153 28-51 (243)
460 1m7g_A Adenylylsulfate kinase; 92.3 0.075 2.6E-06 51.5 3.5 24 130-153 24-47 (211)
461 3vr4_D V-type sodium ATPase su 92.3 0.18 6E-06 54.2 6.5 100 115-219 140-257 (465)
462 1tue_A Replication protein E1; 92.3 0.097 3.3E-06 49.8 4.0 36 113-153 45-80 (212)
463 2f6r_A COA synthase, bifunctio 92.2 0.082 2.8E-06 53.8 3.8 25 129-153 73-97 (281)
464 1zd8_A GTP:AMP phosphotransfer 92.2 0.066 2.2E-06 52.6 3.0 24 130-153 6-29 (227)
465 2z0h_A DTMP kinase, thymidylat 92.2 0.069 2.3E-06 50.9 3.0 21 133-153 2-22 (197)
466 1vht_A Dephospho-COA kinase; s 92.2 0.086 3E-06 51.3 3.7 23 131-153 4-26 (218)
467 2v54_A DTMP kinase, thymidylat 92.1 0.073 2.5E-06 51.1 3.1 24 131-154 4-27 (204)
468 3nwj_A ATSK2; P loop, shikimat 92.1 0.06 2E-06 53.6 2.5 23 131-153 48-70 (250)
469 3upu_A ATP-dependent DNA helic 92.1 0.067 2.3E-06 58.8 3.1 22 132-153 46-67 (459)
470 3sop_A Neuronal-specific septi 92.1 0.074 2.5E-06 53.7 3.2 21 133-153 4-24 (270)
471 3gqb_B V-type ATP synthase bet 92.1 0.12 4E-06 55.5 4.8 100 115-219 136-260 (464)
472 2ged_A SR-beta, signal recogni 92.1 0.11 3.7E-06 49.3 4.2 26 129-154 46-71 (193)
473 3fb4_A Adenylate kinase; psych 92.1 0.072 2.5E-06 51.8 3.0 21 133-153 2-22 (216)
474 1np6_A Molybdopterin-guanine d 92.0 0.085 2.9E-06 49.3 3.3 24 130-153 5-28 (174)
475 1zak_A Adenylate kinase; ATP:A 92.0 0.066 2.2E-06 52.4 2.7 24 130-153 4-27 (222)
476 1ny5_A Transcriptional regulat 92.0 0.88 3E-05 48.5 11.7 45 105-153 138-182 (387)
477 2vp4_A Deoxynucleoside kinase; 91.9 0.074 2.5E-06 52.4 3.0 25 129-153 18-42 (230)
478 3cmu_A Protein RECA, recombina 91.9 0.23 8E-06 63.1 8.0 85 129-220 1425-1515(2050)
479 2r6a_A DNAB helicase, replicat 91.9 0.38 1.3E-05 52.7 8.8 51 130-183 202-252 (454)
480 3dl0_A Adenylate kinase; phosp 91.8 0.079 2.7E-06 51.5 3.0 21 133-153 2-22 (216)
481 2c61_A A-type ATP synthase non 91.8 0.13 4.4E-06 55.6 4.8 100 115-219 141-258 (469)
482 4h09_A Hypothetical leucine ri 91.8 1.5 5.2E-05 46.3 13.5 32 467-499 46-78 (379)
483 1oix_A RAS-related protein RAB 91.8 0.081 2.8E-06 50.3 3.0 24 131-154 29-52 (191)
484 1iy2_A ATP-dependent metallopr 91.8 0.072 2.5E-06 54.2 2.8 178 104-307 40-245 (278)
485 2wji_A Ferrous iron transport 91.7 0.12 4E-06 47.7 3.9 23 132-154 4-26 (165)
486 3k1j_A LON protease, ATP-depen 91.7 0.088 3E-06 60.1 3.7 43 104-154 41-83 (604)
487 3kta_A Chromosome segregation 91.7 0.091 3.1E-06 49.4 3.2 22 132-153 27-48 (182)
488 2ck3_A ATP synthase subunit al 91.6 0.27 9.4E-06 53.4 7.1 100 115-219 151-271 (510)
489 3d3q_A TRNA delta(2)-isopenten 91.5 0.098 3.3E-06 54.3 3.4 22 132-153 8-29 (340)
490 2q6t_A DNAB replication FORK h 91.5 0.79 2.7E-05 49.9 10.9 53 130-185 199-251 (444)
491 3r20_A Cytidylate kinase; stru 91.5 0.098 3.3E-06 51.3 3.2 23 131-153 9-31 (233)
492 3a8t_A Adenylate isopentenyltr 91.4 0.12 4E-06 53.5 3.9 24 130-153 39-62 (339)
493 2j9r_A Thymidine kinase; TK1, 91.4 0.1 3.5E-06 50.1 3.2 111 130-251 27-139 (214)
494 3p32_A Probable GTPase RV1496/ 91.4 0.16 5.3E-06 53.7 5.0 37 113-153 65-101 (355)
495 3be4_A Adenylate kinase; malar 91.4 0.084 2.9E-06 51.4 2.6 23 131-153 5-27 (217)
496 3ake_A Cytidylate kinase; CMP 91.4 0.095 3.3E-06 50.4 3.0 21 133-153 4-24 (208)
497 3cf2_A TER ATPase, transitiona 91.3 1.3 4.4E-05 51.6 12.8 51 104-154 477-534 (806)
498 3exa_A TRNA delta(2)-isopenten 91.2 0.11 3.9E-06 52.9 3.4 23 131-153 3-25 (322)
499 3e1s_A Exodeoxyribonuclease V, 91.2 0.36 1.2E-05 54.3 8.0 23 131-153 204-226 (574)
500 1nij_A Hypothetical protein YJ 91.2 0.095 3.3E-06 54.4 2.9 25 130-154 3-27 (318)
No 1
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=100.00 E-value=4.3e-49 Score=451.43 Aligned_cols=316 Identities=19% Similarity=0.248 Sum_probs=257.4
Q ss_pred ccccchHHHHHHHHhCCCCCCCCCceEEEEEccCCChHHHHHHHHHc--CcccccccceEEEEEeCCCC--CHHHHHHHH
Q 047321 107 CGRVDEKNELLSKLLCGSSEQQKGLDVISLVGLGGIGKTTLAQLAYN--NDEVKRNFEKVIWVCVSNTF--EEISVAKAI 182 (807)
Q Consensus 107 vGR~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~--~~~~~~~f~~~~wv~~~~~~--~~~~~~~~i 182 (807)
|||++++++|.++|.... ....++|+|+||||+||||||+.+|+ +.+++.+|+.++||++++.. +...+++.|
T Consensus 131 ~GR~~~~~~l~~~L~~~~---~~~~~vv~I~G~gGvGKTtLA~~v~~~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~~~i 207 (549)
T 2a5y_B 131 YIREYHVDRVIKKLDEMC---DLDSFFLFLHGRAGSGKSVIASQALSKSDQLIGINYDSIVWLKDSGTAPKSTFDLFTDI 207 (549)
T ss_dssp CCCHHHHHHHHHHHHHHT---TSSSEEEEEECSTTSSHHHHHHHHHHHCSSTBTTTBSEEEEEECCCCSTTHHHHHHHHH
T ss_pred CCchHHHHHHHHHHhccc---CCCceEEEEEcCCCCCHHHHHHHHHHhhhHHHhccCCcEEEEEECCCCCCCHHHHHHHH
Confidence 599999999999997543 23689999999999999999999998 67899999999999999885 789999999
Q ss_pred HHHcCCCCC-------CCccHHHHHHHHHHHHhCC-ceEEEEeCCCCCCccChHHHHHhhcCCCCCcEEEEEcCCHHHHH
Q 047321 183 IEGLGVSAF-------GLSEFESLMKQIQEYITGK-KIFLVLDDVWDGDYKKWDPFFSCLKNGHHESKILITTHDRSVAL 254 (807)
Q Consensus 183 ~~~l~~~~~-------~~~~~~~~~~~l~~~l~~k-~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~IliTTR~~~v~~ 254 (807)
+.+++.... +..+.+.+...+++.++++ ||||||||||+.+...|.. .+||+||||||++.++.
T Consensus 208 l~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~~kr~LlVLDdv~~~~~~~~~~--------~~gs~ilvTTR~~~v~~ 279 (549)
T 2a5y_B 208 LLMLKSEDDLLNFPSVEHVTSVVLKRMICNALIDRPNTLFVFDDVVQEETIRWAQ--------ELRLRCLVTTRDVEISN 279 (549)
T ss_dssp HHHHTTTSCCTTCCCCTTCCHHHHHHHHHHHHTTSTTEEEEEEEECCHHHHHHHH--------HTTCEEEEEESBGGGGG
T ss_pred HHHHhcCcccccccccccccHHHHHHHHHHHHcCCCcEEEEEECCCCchhhcccc--------cCCCEEEEEcCCHHHHH
Confidence 999986521 2234567788999999996 9999999999853222221 27999999999999998
Q ss_pred HhC-CCceEeCCCCChhhHHHHHHHHHhccCCccCccchHHHHHHHHHHcCCCHHHHHHHHHHhhcCCCHHHHHHHHhcc
Q 047321 255 QLG-SIDIIPVKELGEGECWLLFKQIAFLRRSFEDCEKLEPIGRKIASKCKGLPLAAKVIGNLLRSKNTAKEWHIILDSE 333 (807)
Q Consensus 255 ~~~-~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~~~~I~~~c~glPLai~~~~~~l~~~~~~~~w~~~~~~~ 333 (807)
.++ ....|+|++|+.++||+||.++||... ..+.+.+++++|+++|+|+||||+++|+.++.+ + -+|...+.+.
T Consensus 280 ~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~---~~~~~~~~~~~I~~~c~GlPLAl~~~g~~l~~~-~-w~~~~~l~~~ 354 (549)
T 2a5y_B 280 AASQTCEFIEVTSLEIDECYDFLEAYGMPMP---VGEKEEDVLNKTIELSSGNPATLMMFFKSCEPK-T-FEKMAQLNNK 354 (549)
T ss_dssp GCCSCEEEEECCCCCHHHHHHHHHHTSCCCC-----CHHHHHHHHHHHHHTTCHHHHHHHHTTCCSS-S-HHHHHHHHHH
T ss_pred HcCCCCeEEECCCCCHHHHHHHHHHHhcCCC---CchhHHHHHHHHHHHhCCChHHHHHHHHHhccc-h-HHHHHHhHHH
Confidence 876 346799999999999999999987643 246788899999999999999999999999766 2 2333444443
Q ss_pred ccccccCCCCchhhHHhcccCCCCccchhhhhh-----------hhccCCCcceechhHHHHHHHhc--CCCCCCC-Cch
Q 047321 334 MWKVQEIGQGILAPLLLSYNDLPSNSMVKRCFS-----------YCAVFPKDYNMNKRELINLWMTQ--GYLNADE-DEE 399 (807)
Q Consensus 334 ~~~~~~~~~~i~~~l~lsy~~L~~~~~~k~cfl-----------~~s~fp~~~~i~~~~li~~W~ae--g~i~~~~-~~~ 399 (807)
.+.. ...++.+++.+||++||. ++|.||+ |||+||+++.|+ +++|+|+ ||+...+ ..+
T Consensus 355 l~~~--~~~~i~~~l~~Sy~~L~~--~lk~~f~~Ls~~er~l~~~ls~fp~~~~i~----i~~w~a~~~G~i~~~~~~~~ 426 (549)
T 2a5y_B 355 LESR--GLVGVECITPYSYKSLAM--ALQRCVEVLSDEDRSALAFAVVMPPGVDIP----VKLWSCVIPVDICSNEEEQL 426 (549)
T ss_dssp HHHH--CSSTTCCCSSSSSSSHHH--HHHHHHHTSCHHHHHHTTGGGSSCTTCCEE----HHHHHHHSCC-------CCC
T ss_pred hhcc--cHHHHHHHHhcccccccH--HHHHHHhccchhhhhHhhheeeeCCCCeee----eeeeeeeccceeccCCCCCC
Confidence 3332 245699999999999999 9999999 999999999999 8899999 9998766 566
Q ss_pred HHHHHHHHHHHHhhcCCcceeccCCCCCccEEEEChhHHHHHHHhhccccE
Q 047321 400 MEMIGEEYFNILATRSFFQEFQKNDDDDFTSCKMHDIVNDFAQFVSRKECL 450 (807)
Q Consensus 400 ~e~~~~~~~~~L~~rsll~~~~~~~~~~~~~~~mHdlv~~~a~~~~~~e~~ 450 (807)
++++++ ||++|+++|||++...+ ...+|+|||+||++|++++.+++.
T Consensus 427 ~~~~~~-~l~~L~~rsLl~~~~~~---~~~~~~mHdlv~~~a~~~~~~~~~ 473 (549)
T 2a5y_B 427 DDEVAD-RLKRLSKRGALLSGKRM---PVLTFKIDHIIHMFLKHVVDAQTI 473 (549)
T ss_dssp THHHHH-HHHHTTTBSSCSEEECS---SSCEEECCHHHHHHHHTTSCTHHH
T ss_pred HHHHHH-HHHHHHHcCCeeEecCC---CceEEEeChHHHHHHHHHHHHHHH
Confidence 788887 99999999999987643 345799999999999999988764
No 2
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=100.00 E-value=2.4e-39 Score=373.20 Aligned_cols=286 Identities=19% Similarity=0.192 Sum_probs=227.5
Q ss_pred ccccccchHHHHHHHHhCCCCCCCCCceEEEEEccCCChHHHHHHHHHcCcccccccce-EEEEEeCCCCCHHHHHHHHH
Q 047321 105 GVCGRVDEKNELLSKLLCGSSEQQKGLDVISLVGLGGIGKTTLAQLAYNNDEVKRNFEK-VIWVCVSNTFEEISVAKAII 183 (807)
Q Consensus 105 ~~vGR~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~-~~wv~~~~~~~~~~~~~~i~ 183 (807)
..|||++++++|.++|... ...++|+|+||||+||||||+.+|++.+++.+|+. ++|+++++.++...++..|+
T Consensus 129 ~~VGRe~eLeeL~elL~~~-----d~~RVV~IvGmGGIGKTTLAk~Vy~d~rV~~~Fd~gV~WVsVs~~~d~~~IL~~Ll 203 (1221)
T 1vt4_I 129 YNVSRLQPYLKLRQALLEL-----RPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQ 203 (1221)
T ss_dssp SCCCCHHHHHHHHHHHHHC-----CSSCEEEECCSTTSSHHHHHHHHHHHCHHHHHHSSCEEEEECCCSSSHHHHHHHHH
T ss_pred CCCCcHHHHHHHHHHHhcc-----CCCeEEEEEcCCCccHHHHHHHHHHhhHHHHhCCCcEEEEEeCCCCCHHHHHHHHH
Confidence 3599999999999999842 24789999999999999999999987778899986 99999999999888887777
Q ss_pred HHcCC---C---CCC-----CccHHHHHHHHHHHH---hCCceEEEEeCCCCCCccChHHHHHhhcCCCCCcEEEEEcCC
Q 047321 184 EGLGV---S---AFG-----LSEFESLMKQIQEYI---TGKKIFLVLDDVWDGDYKKWDPFFSCLKNGHHESKILITTHD 249 (807)
Q Consensus 184 ~~l~~---~---~~~-----~~~~~~~~~~l~~~l---~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~IliTTR~ 249 (807)
+.++. . ..+ ..+.+.+...+++.+ .++|+||||||||+ ...|+.+ + +||+||||||+
T Consensus 204 ~lL~~i~~~~~~~~d~~~~ip~~leeL~e~Lr~lL~~l~~KRvLLVLDDVwd--~eqLe~f----~---pGSRILVTTRd 274 (1221)
T 1vt4_I 204 KLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQN--AKAWNAF----N---LSCKILLTTRF 274 (1221)
T ss_dssp HHHHHHCSSSTTTSCCCSSHHHHHHHHHHHHHHHHHHSTTSSCEEEEESCCC--HHHHHHH----H---SSCCEEEECSC
T ss_pred HHHhhcCcccccccccccCCCCCHHHHHHHHHHHHHhhcCCCEEEEEeCcCh--HHHHHhh----C---CCeEEEEeccC
Confidence 64321 1 111 123455667777766 68999999999987 3445432 2 78999999999
Q ss_pred HHHHHHhCCCceEeCC------CCChhhHHHHHHHHHhccCCccCccchHHHHHHHHHHcCCCHHHHHHHHHHhhcCC-C
Q 047321 250 RSVALQLGSIDIIPVK------ELGEGECWLLFKQIAFLRRSFEDCEKLEPIGRKIASKCKGLPLAAKVIGNLLRSKN-T 322 (807)
Q Consensus 250 ~~v~~~~~~~~~~~l~------~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~~~~I~~~c~glPLai~~~~~~l~~~~-~ 322 (807)
+.++..+.....++++ +|+.+|||+||.+.. +.. ..++..+| |+|+||||+++|+.|+.+. +
T Consensus 275 ~~Va~~l~g~~vy~LeL~d~dL~LS~eEA~eLF~~~~-g~~-------~eeL~~eI---CgGLPLALkLaGs~Lr~k~~s 343 (1221)
T 1vt4_I 275 KQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYL-DCR-------PQDLPREV---LTTNPRRLSIIAESIRDGLAT 343 (1221)
T ss_dssp SHHHHHHHHHSSCEEEECSSSSCCCHHHHHHHHHHHH-CCC-------TTTHHHHH---CCCCHHHHHHHHHHHHHSCSS
T ss_pred hHHHHhcCCCeEEEecCccccCCcCHHHHHHHHHHHc-CCC-------HHHHHHHH---hCCCHHHHHHHHHHHhCCCCC
Confidence 9998655433356666 999999999999883 221 11223333 9999999999999999874 6
Q ss_pred HHHHHHHHhccccccccCCCCchhhHHhcccCCCCccch-hhhhhhhccCCCcceechhHHHHHHHhcCCCCCCCCchHH
Q 047321 323 AKEWHIILDSEMWKVQEIGQGILAPLLLSYNDLPSNSMV-KRCFSYCAVFPKDYNMNKRELINLWMTQGYLNADEDEEME 401 (807)
Q Consensus 323 ~~~w~~~~~~~~~~~~~~~~~i~~~l~lsy~~L~~~~~~-k~cfl~~s~fp~~~~i~~~~li~~W~aeg~i~~~~~~~~e 401 (807)
.++|... ....+..+|.+||+.||+ ++ |+||+|||+||+++.|+++.++.+|+++| +
T Consensus 344 ~eeW~~~----------~~~~I~aaLelSYd~Lp~--eelK~cFL~LAIFPed~~I~~elLa~LW~aeG----------e 401 (1221)
T 1vt4_I 344 WDNWKHV----------NCDKLTTIIESSLNVLEP--AEYRKMFDRLSVFPPSAHIPTILLSLIWFDVI----------K 401 (1221)
T ss_dssp HHHHHHC----------SCHHHHHHHHHHHHHSCT--THHHHHHHHTTSSCTTSCEEHHHHHHHHCSSC----------S
T ss_pred HHHHhcC----------ChhHHHHHHHHHHHhCCH--HHHHHHHHHHhCCCCCCCCCHHHHHHHhcCCC----------H
Confidence 7788753 134689999999999999 88 99999999999999999999999999987 1
Q ss_pred HHHHHHHHHHhhcCCcceeccCCCCCccEEEEChhHHHHHH
Q 047321 402 MIGEEYFNILATRSFFQEFQKNDDDDFTSCKMHDIVNDFAQ 442 (807)
Q Consensus 402 ~~~~~~~~~L~~rsll~~~~~~~~~~~~~~~mHdlv~~~a~ 442 (807)
+.++++|++|+++|||+... ...+|+|||++++++.
T Consensus 402 edAe~~L~eLvdRSLLq~d~-----~~~rYrMHDLllELr~ 437 (1221)
T 1vt4_I 402 SDVMVVVNKLHKYSLVEKQP-----KESTISIPSIYLELKV 437 (1221)
T ss_dssp HHHHHHHHHHHTSSSSSBCS-----SSSEEBCCCHHHHHHH
T ss_pred HHHHHHHHHHHhhCCEEEeC-----CCCEEEehHHHHHHhc
Confidence 35888999999999999731 2246999999999663
No 3
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=1.2e-37 Score=394.69 Aligned_cols=314 Identities=22% Similarity=0.309 Sum_probs=248.5
Q ss_pred CCccCCccccccchHHHHHHHHhCCCCCCCCCceEEEEEccCCChHHHHHHHHHcCccc-cccc-ceEEEEEeCCCCC--
Q 047321 99 SLIDEGGVCGRVDEKNELLSKLLCGSSEQQKGLDVISLVGLGGIGKTTLAQLAYNNDEV-KRNF-EKVIWVCVSNTFE-- 174 (807)
Q Consensus 99 ~~~~~~~~vGR~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~-~~~f-~~~~wv~~~~~~~-- 174 (807)
.+..++.||||++++++|.++|.... ...++|+|+||||+||||||+++|++.+. ..+| +.++||++++..+
T Consensus 119 ~p~~~~~~vgR~~~~~~l~~~l~~~~----~~~~~v~i~G~gG~GKTtLa~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 194 (1249)
T 3sfz_A 119 VPQRPVIFVTRKKLVHAIQQKLWKLN----GEPGWVTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVSIGKQDKSG 194 (1249)
T ss_dssp CCCCCSSCCCCHHHHHHHHHHHHTTT----TSCEEEEEECSTTSSHHHHHHHHTCCHHHHTTTSTTCEEEEECCSCCHHH
T ss_pred CCCCCceeccHHHHHHHHHHHHhhcc----CCCCEEEEEeCCCCCHHHHHHHHhcChhHHHhhCCCeEEEEEECCcCchH
Confidence 33455679999999999999997543 36899999999999999999999997543 4445 6788999988654
Q ss_pred HHHHHHHHHHHcCCCC----CCCccHHHHHHHHHHHHhCC--ceEEEEeCCCCCCccChHHHHHhhcCCCCCcEEEEEcC
Q 047321 175 EISVAKAIIEGLGVSA----FGLSEFESLMKQIQEYITGK--KIFLVLDDVWDGDYKKWDPFFSCLKNGHHESKILITTH 248 (807)
Q Consensus 175 ~~~~~~~i~~~l~~~~----~~~~~~~~~~~~l~~~l~~k--~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~IliTTR 248 (807)
....+..++..+.... ....+.+.+...++..+.++ |+||||||||+. ..| ....+|++||||||
T Consensus 195 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LlvlDd~~~~--~~~-------~~~~~~~~ilvTtR 265 (1249)
T 3sfz_A 195 LLMKLQNLCMRLDQEESFSQRLPLNIEEAKDRLRVLMLRKHPRSLLILDDVWDP--WVL-------KAFDNQCQILLTTR 265 (1249)
T ss_dssp HHHHHHHHHHHHTTTCTTCSSCCSSHHHHHHHHHHHTSSSSCSCEEEEESCCCH--HHH-------TTTCSSCEEEEEES
T ss_pred HHHHHHHHHHHhhhhcccccCCCCCHHHHHHHHHHHHhccCCCEEEEEecCCCH--HHH-------HhhcCCCEEEEEcC
Confidence 3344666777766532 22356778888899988877 999999999863 222 23368999999999
Q ss_pred CHHHHHH-hCCCceEeCCC-CChhhHHHHHHHHHhccCCccCccchHHHHHHHHHHcCCCHHHHHHHHHHhhcCCCHHHH
Q 047321 249 DRSVALQ-LGSIDIIPVKE-LGEGECWLLFKQIAFLRRSFEDCEKLEPIGRKIASKCKGLPLAAKVIGNLLRSKNTAKEW 326 (807)
Q Consensus 249 ~~~v~~~-~~~~~~~~l~~-L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~~~~I~~~c~glPLai~~~~~~l~~~~~~~~w 326 (807)
++.++.. ++....+++.+ |++++|++||...++... +.+.+++++|+++|+|+||||+++|++|+.+. ..|
T Consensus 266 ~~~~~~~~~~~~~~~~~~~~l~~~~a~~l~~~~~~~~~-----~~~~~~~~~i~~~~~glPLal~~~~~~l~~~~--~~~ 338 (1249)
T 3sfz_A 266 DKSVTDSVMGPKHVVPVESGLGREKGLEILSLFVNMKK-----EDLPAEAHSIIKECKGSPLVVSLIGALLRDFP--NRW 338 (1249)
T ss_dssp STTTTTTCCSCBCCEECCSSCCHHHHHHHHHHHHTSCS-----TTCCTHHHHHHHHTTTCHHHHHHHHHHHHHSS--SCH
T ss_pred CHHHHHhhcCCceEEEecCCCCHHHHHHHHHHhhCCCh-----hhCcHHHHHHHHHhCCCHHHHHHHHHHhhcCh--hHH
Confidence 9998854 45567899996 999999999999884322 33456789999999999999999999998765 346
Q ss_pred HHHHhcccccc----ccC----CCCchhhHHhcccCCCCccchhhhhhhhccCCCcceechhHHHHHHHhcCCCCCCCCc
Q 047321 327 HIILDSEMWKV----QEI----GQGILAPLLLSYNDLPSNSMVKRCFSYCAVFPKDYNMNKRELINLWMTQGYLNADEDE 398 (807)
Q Consensus 327 ~~~~~~~~~~~----~~~----~~~i~~~l~lsy~~L~~~~~~k~cfl~~s~fp~~~~i~~~~li~~W~aeg~i~~~~~~ 398 (807)
...++...... ... ...+..+|.+||+.||+ ++|+||+|||+||+++.|+++.++.+|.++
T Consensus 339 ~~~l~~l~~~~~~~~~~~~~~~~~~~~~~l~~s~~~L~~--~~~~~~~~l~~f~~~~~i~~~~~~~~~~~~--------- 407 (1249)
T 3sfz_A 339 AYYLRQLQNKQFKRIRKSSSYDYEALDEAMSISVEMLRE--DIKDYYTDLSILQKDVKVPTKVLCVLWDLE--------- 407 (1249)
T ss_dssp HHHHHHHHSCCCCCSSCTTCTTHHHHHHHHHHHHHTSCT--TTHHHHHHGGGSCTTCCEEHHHHHHHHTCC---------
T ss_pred HHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhCCH--HHHHHHHHhCccCCCCeeCHHHHHHHhCCC---------
Confidence 66555432211 111 13588999999999999 999999999999999999999999999765
Q ss_pred hHHHHHHHHHHHHhhcCCcceeccCCCCCccEEEEChhHHHHHHHhhccc
Q 047321 399 EMEMIGEEYFNILATRSFFQEFQKNDDDDFTSCKMHDIVNDFAQFVSRKE 448 (807)
Q Consensus 399 ~~e~~~~~~~~~L~~rsll~~~~~~~~~~~~~~~mHdlv~~~a~~~~~~e 448 (807)
++.+++++++|+++|||+... ++...+|+|||+||++|++.+.++
T Consensus 408 --~~~~~~~l~~L~~~sl~~~~~---~~~~~~~~~h~l~~~~~~~~~~~~ 452 (1249)
T 3sfz_A 408 --TEEVEDILQEFVNKSLLFCNR---NGKSFCYYLHDLQVDFLTEKNRSQ 452 (1249)
T ss_dssp --HHHHHHHHHHHHHTTSCEEEE---SSSSEEEECCHHHHHHHHHHTGGG
T ss_pred --HHHHHHHHHHHHhccceEEec---CCCceEEEecHHHHHHHHhhhhHH
Confidence 367899999999999999754 344467999999999999998766
No 4
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=100.00 E-value=1.4e-34 Score=336.27 Aligned_cols=308 Identities=21% Similarity=0.273 Sum_probs=235.6
Q ss_pred ccCCccccccchHHHHHHHHhCCCCCCCCCceEEEEEccCCChHHHHHHHHHcCccc-cccc-ceEEEEEeCCCCCHHHH
Q 047321 101 IDEGGVCGRVDEKNELLSKLLCGSSEQQKGLDVISLVGLGGIGKTTLAQLAYNNDEV-KRNF-EKVIWVCVSNTFEEISV 178 (807)
Q Consensus 101 ~~~~~~vGR~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~-~~~f-~~~~wv~~~~~~~~~~~ 178 (807)
..++.||||++++++|.+.|.... +..++|+|+||||+||||||..++++.++ ..+| +.++|++++.. +...+
T Consensus 121 ~~~~~~vGR~~~l~~L~~~L~~~~----~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~v~wv~~~~~-~~~~~ 195 (591)
T 1z6t_A 121 QRPVVFVTRKKLVNAIQQKLSKLK----GEPGWVTIHGMAGCGKSVLAAEAVRDHSLLEGCFPGGVHWVSVGKQ-DKSGL 195 (591)
T ss_dssp CCCSSCCCCHHHHHHHHHHHTTST----TSCEEEEEECCTTSSHHHHHHHHHCCHHHHHHHCTTCEEEEEEESC-CHHHH
T ss_pred CCCCeecccHHHHHHHHHHHhccc----CCCceEEEEcCCCCCHHHHHHHHHhchhHHHhhCCCceEEEECCCC-chHHH
Confidence 345679999999999999997532 35789999999999999999999997665 7889 48999999776 33333
Q ss_pred HHH---HHHHcCCC----CCCCccHHHHHHHHHHHHhC--CceEEEEeCCCCCCccChHHHHHhhcCCCCCcEEEEEcCC
Q 047321 179 AKA---IIEGLGVS----AFGLSEFESLMKQIQEYITG--KKIFLVLDDVWDGDYKKWDPFFSCLKNGHHESKILITTHD 249 (807)
Q Consensus 179 ~~~---i~~~l~~~----~~~~~~~~~~~~~l~~~l~~--k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~IliTTR~ 249 (807)
+.. ++..++.. .....+.+.....+...+.+ +++||||||+|+. ..+ ....+|++||||||+
T Consensus 196 ~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LLVLDdv~~~-----~~l----~~l~~~~~ilvTsR~ 266 (591)
T 1z6t_A 196 LMKLQNLCTRLDQDESFSQRLPLNIEEAKDRLRILMLRKHPRSLLILDDVWDS-----WVL----KAFDSQCQILLTTRD 266 (591)
T ss_dssp HHHHHHHHHHHCSSCCSCSSCCCSHHHHHHHHHHHHHHTCTTCEEEEEEECCH-----HHH----HTTCSSCEEEEEESC
T ss_pred HHHHHHHHHHhccccccccCCCCCHHHHHHHHHHHHccCCCCeEEEEeCCCCH-----HHH----HHhcCCCeEEEECCC
Confidence 333 34444421 12345667778888888876 7999999999863 222 223678999999999
Q ss_pred HHHHHHhCCCceEeC---CCCChhhHHHHHHHHHhccCCccCccchHHHHHHHHHHcCCCHHHHHHHHHHhhcCCCHHHH
Q 047321 250 RSVALQLGSIDIIPV---KELGEGECWLLFKQIAFLRRSFEDCEKLEPIGRKIASKCKGLPLAAKVIGNLLRSKNTAKEW 326 (807)
Q Consensus 250 ~~v~~~~~~~~~~~l---~~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~~~~I~~~c~glPLai~~~~~~l~~~~~~~~w 326 (807)
+.++..+.. ..+++ ++|+.+++++||...++... ....+.+.+|+++|+|+||||+++|+.++... ..|
T Consensus 267 ~~~~~~~~~-~~~~v~~l~~L~~~ea~~L~~~~~~~~~-----~~~~~~~~~i~~~~~G~PLal~~~a~~l~~~~--~~w 338 (591)
T 1z6t_A 267 KSVTDSVMG-PKYVVPVESSLGKEKGLEILSLFVNMKK-----ADLPEQAHSIIKECKGSPLVVSLIGALLRDFP--NRW 338 (591)
T ss_dssp GGGGTTCCS-CEEEEECCSSCCHHHHHHHHHHHHTSCG-----GGSCTHHHHHHHHHTTCHHHHHHHHHHHHHST--TCH
T ss_pred cHHHHhcCC-CceEeecCCCCCHHHHHHHHHHHhCCCc-----ccccHHHHHHHHHhCCCcHHHHHHHHHHhcCc--hhH
Confidence 988765432 33443 68999999999999886421 12245689999999999999999999998764 357
Q ss_pred HHHHhcccccc--------ccCCCCchhhHHhcccCCCCccchhhhhhhhccCCCcceechhHHHHHHHhcCCCCCCCCc
Q 047321 327 HIILDSEMWKV--------QEIGQGILAPLLLSYNDLPSNSMVKRCFSYCAVFPKDYNMNKRELINLWMTQGYLNADEDE 398 (807)
Q Consensus 327 ~~~~~~~~~~~--------~~~~~~i~~~l~lsy~~L~~~~~~k~cfl~~s~fp~~~~i~~~~li~~W~aeg~i~~~~~~ 398 (807)
..+++...... ......+..++..||+.||+ +.|.||++||+||+++.|+.+.++.+|.++
T Consensus 339 ~~~l~~l~~~~~~~~~~~~~~~~~~l~~~l~~s~~~L~~--~~~~~l~~la~f~~~~~i~~~~l~~l~~~~--------- 407 (591)
T 1z6t_A 339 EYYLKQLQNKQFKRIRKSSSYDYEALDEAMSISVEMLRE--DIKDYYTDLSILQKDVKVPTKVLCILWDME--------- 407 (591)
T ss_dssp HHHHHHHHSCCCCCSSCCCSSCCHHHHHHHHHHHHTSCT--TTHHHHHHGGGCCTTCCEEHHHHHHHHTCC---------
T ss_pred HHHHHHHHHhHHHHhhhccccchHHHHHHHHHHHHhCCH--HHHHHHHHccccCCCCccCHHHHHHHhccC---------
Confidence 76665432211 11123588899999999999 899999999999999999999999999653
Q ss_pred hHHHHHHHHHHHHhhcCCcceeccCCCCCccEEEEChhHHHHHHHhhc
Q 047321 399 EMEMIGEEYFNILATRSFFQEFQKNDDDDFTSCKMHDIVNDFAQFVSR 446 (807)
Q Consensus 399 ~~e~~~~~~~~~L~~rsll~~~~~~~~~~~~~~~mHdlv~~~a~~~~~ 446 (807)
.+.+.+++++|+++|||+.... +...+|+||+++|++++....
T Consensus 408 --~~~~~~~l~~L~~~~Ll~~~~~---~~~~~~~~H~lv~~~~~~~~~ 450 (591)
T 1z6t_A 408 --TEEVEDILQEFVNKSLLFCDRN---GKSFRYYLHDLQVDFLTEKNC 450 (591)
T ss_dssp --HHHHHHHHHHHHHTTSSEEEEE---TTEEEEECCHHHHHHHHHHTG
T ss_pred --HHHHHHHHHHHHhCcCeEEecC---CCccEEEEcHHHHHHHHhhhh
Confidence 2457889999999999986542 334579999999999998843
No 5
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.81 E-value=2.7e-19 Score=191.09 Aligned_cols=223 Identities=21% Similarity=0.296 Sum_probs=175.4
Q ss_pred CcceEEEEEeeccCCCCccccCCCCceeEEEeCCCCCCCCCCCCccccccccCcccceeeeccccCCccCeeEecCccCC
Q 047321 466 GDKVRHLGLKFEEGASFPMSIHGLNRLRTLLIYDQSPYNPSLSSSILPELFNKLACLRALVIRQSLRTLEKFVVGGGVDG 545 (807)
Q Consensus 466 ~~~~r~L~l~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~l~~~i~~LP~~i~~L~~L~~LdL~~~L~~L~~l~~~~~~~~ 545 (807)
...++.|+++++.+..+|..+.++++|++|++++| .+..+|..++++++|++|+|+.+
T Consensus 80 ~~~l~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n-------~l~~lp~~~~~l~~L~~L~Ls~n--------------- 137 (328)
T 4fcg_A 80 QPGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAA-------GLMELPDTMQQFAGLETLTLARN--------------- 137 (328)
T ss_dssp STTCCEEEEESSCCSSCCSCGGGGTTCSEEEEESS-------CCCCCCSCGGGGTTCSEEEEESC---------------
T ss_pred ccceeEEEccCCCchhcChhhhhCCCCCEEECCCC-------CccchhHHHhccCCCCEEECCCC---------------
Confidence 46789999999999999999999999999999998 77899999999999999999722
Q ss_pred CccccccccccccccCcccccCCCCCCChhHHHHhhccCCCCCCeEEEEeeccCCCcchhhhhchhhHHHHHHhhcCCCC
Q 047321 546 SNTCRLESLKNLQLLRECGIEGLGNVSHLDEAERLQLYNQQNLLRLRLRFGRVVDGEDEERRRKNEKDKQLLEALQPPLS 625 (807)
Q Consensus 546 ~~~~~i~~L~~L~~L~~L~i~~l~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~l~p~~~ 625 (807)
.+.. ++. .+.++++|+.|++++|... .
T Consensus 138 ----~l~~-----------------lp~-------~l~~l~~L~~L~L~~n~~~-------------------------~ 164 (328)
T 4fcg_A 138 ----PLRA-----------------LPA-------SIASLNRLRELSIRACPEL-------------------------T 164 (328)
T ss_dssp ----CCCC-----------------CCG-------GGGGCTTCCEEEEEEETTC-------------------------C
T ss_pred ----cccc-----------------CcH-------HHhcCcCCCEEECCCCCCc-------------------------c
Confidence 1110 010 2445667777777776521 2
Q ss_pred CCCC----------CCCcc-cceEeccCCcCceeeCcccCCCCCCCCCCCCCCCCCCccccCcccccccccCCCccccch
Q 047321 626 HLPP----------LGKLP-LKKLELRDLESVKRVGNEFLGIEESSEDDPSSSSSSPSVIAFPKLKSLEIDGMKELEEWN 694 (807)
Q Consensus 626 ~lp~----------l~~L~-L~~L~L~~~~~l~~i~~~~~~~~~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~ 694 (807)
.+|. ++.++ |++|+|+++ .++.++.. +..+++|+.|+++++ .+..++
T Consensus 165 ~~p~~~~~~~~~~~~~~l~~L~~L~L~~n-~l~~lp~~--------------------l~~l~~L~~L~L~~N-~l~~l~ 222 (328)
T 4fcg_A 165 ELPEPLASTDASGEHQGLVNLQSLRLEWT-GIRSLPAS--------------------IANLQNLKSLKIRNS-PLSALG 222 (328)
T ss_dssp CCCSCSEEEC-CCCEEESTTCCEEEEEEE-CCCCCCGG--------------------GGGCTTCCEEEEESS-CCCCCC
T ss_pred ccChhHhhccchhhhccCCCCCEEECcCC-CcCcchHh--------------------hcCCCCCCEEEccCC-CCCcCc
Confidence 3332 23477 888888875 35444432 457889999999885 565555
Q ss_pred hhhccccCCCCCCcccEEEEccCCCCCCCcccccCCCCccEEeeccCcccccccccccccCCCCCCCCeeeeccCCCccc
Q 047321 695 YRITRKENISIMPRLSSLQIMNCRKLKALPDYLLQTIALQKLSIYSCDLLEELPILEDRRTTDIPRLSSLAIWYCPKLKV 774 (807)
Q Consensus 695 ~~~~~~~~~~~l~~L~~L~l~~c~~L~~lp~~l~~l~~L~~L~l~~c~~l~~lP~~~~~~~~~l~~L~~L~i~~c~~l~~ 774 (807)
. .+..+++|+.|++++|.....+|..+..+++|+.|++++|+.++.+| ..+..+++|++|++++|+.++.
T Consensus 223 ~------~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p----~~~~~l~~L~~L~L~~n~~~~~ 292 (328)
T 4fcg_A 223 P------AIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLP----LDIHRLTQLEKLDLRGCVNLSR 292 (328)
T ss_dssp G------GGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCC----TTGGGCTTCCEEECTTCTTCCC
T ss_pred h------hhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcc----hhhhcCCCCCEEeCCCCCchhh
Confidence 4 45678999999999998888999999999999999999999899998 7788899999999999999999
Q ss_pred CCccCCCCCcccccccccchh
Q 047321 775 LPDYLLRTTTLQAGEQDYENE 795 (807)
Q Consensus 775 lP~~l~~l~~L~~L~l~~~~~ 795 (807)
+|..+.++++|+.+++..+.+
T Consensus 293 iP~~l~~L~~L~~l~l~~~~~ 313 (328)
T 4fcg_A 293 LPSLIAQLPANCIILVPPHLQ 313 (328)
T ss_dssp CCGGGGGSCTTCEEECCGGGS
T ss_pred ccHHHhhccCceEEeCCHHHH
Confidence 999999999999999887655
No 6
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.79 E-value=7.5e-19 Score=189.67 Aligned_cols=269 Identities=16% Similarity=0.210 Sum_probs=160.2
Q ss_pred CcceEEEEEeeccCCCCccccCCCCceeEEEeCCCCCCCCCCCCccccccccCcccceeeecc----------ccCCccC
Q 047321 466 GDKVRHLGLKFEEGASFPMSIHGLNRLRTLLIYDQSPYNPSLSSSILPELFNKLACLRALVIR----------QSLRTLE 535 (807)
Q Consensus 466 ~~~~r~L~l~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~l~~~i~~LP~~i~~L~~L~~LdL~----------~~L~~L~ 535 (807)
..++++|++++|.+..++. +..+++|++|++++| .+..+| .++++++|++|+++ .++.+|+
T Consensus 65 ~~~L~~L~l~~n~i~~~~~-~~~l~~L~~L~L~~n-------~i~~~~-~~~~l~~L~~L~l~~n~i~~~~~~~~l~~L~ 135 (347)
T 4fmz_A 65 LTNLEYLNLNGNQITDISP-LSNLVKLTNLYIGTN-------KITDIS-ALQNLTNLRELYLNEDNISDISPLANLTKMY 135 (347)
T ss_dssp CTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSS-------CCCCCG-GGTTCTTCSEEECTTSCCCCCGGGTTCTTCC
T ss_pred cCCccEEEccCCccccchh-hhcCCcCCEEEccCC-------cccCch-HHcCCCcCCEEECcCCcccCchhhccCCcee
Confidence 4567777777777766555 777777777777776 566665 47777777777776 3455556
Q ss_pred eeEecCccCCCccccccccccccccCcccccCCCCCCChhHHHHhhccCCCCCCeEEEEeeccCCCcchhhhhchhhHHH
Q 047321 536 KFVVGGGVDGSNTCRLESLKNLQLLRECGIEGLGNVSHLDEAERLQLYNQQNLLRLRLRFGRVVDGEDEERRRKNEKDKQ 615 (807)
Q Consensus 536 ~l~~~~~~~~~~~~~i~~L~~L~~L~~L~i~~l~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~ 615 (807)
.+.++.+.. ...+..+..+.+|+.|.+.+..- .... .+..+++|+.|++++|.+
T Consensus 136 ~L~l~~n~~---~~~~~~~~~l~~L~~L~l~~~~~-~~~~-----~~~~l~~L~~L~l~~n~l----------------- 189 (347)
T 4fmz_A 136 SLNLGANHN---LSDLSPLSNMTGLNYLTVTESKV-KDVT-----PIANLTDLYSLSLNYNQI----------------- 189 (347)
T ss_dssp EEECTTCTT---CCCCGGGTTCTTCCEEECCSSCC-CCCG-----GGGGCTTCSEEECTTSCC-----------------
T ss_pred EEECCCCCC---cccccchhhCCCCcEEEecCCCc-CCch-----hhccCCCCCEEEccCCcc-----------------
Confidence 666655421 12233355555555555554221 1111 155666667776666653
Q ss_pred HHHhhcCCCCCCCCCCCcc-cceEeccCCcCceeeCc--ccCCCCCCCCCCCCCCCCCCccccCcccccccccCCCcccc
Q 047321 616 LLEALQPPLSHLPPLGKLP-LKKLELRDLESVKRVGN--EFLGIEESSEDDPSSSSSSPSVIAFPKLKSLEIDGMKELEE 692 (807)
Q Consensus 616 ~l~~l~p~~~~lp~l~~L~-L~~L~L~~~~~l~~i~~--~~~~~~~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~ 692 (807)
..++.+..++ |+.|+++++. +..++. .......|.+.++.....++ +..+++|+.|+++++ .+..
T Consensus 190 ---------~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n-~l~~ 257 (347)
T 4fmz_A 190 ---------EDISPLASLTSLHYFTAYVNQ-ITDITPVANMTRLNSLKIGNNKITDLSP-LANLSQLTWLEIGTN-QISD 257 (347)
T ss_dssp ---------CCCGGGGGCTTCCEEECCSSC-CCCCGGGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSS-CCCC
T ss_pred ---------cccccccCCCccceeecccCC-CCCCchhhcCCcCCEEEccCCccCCCcc-hhcCCCCCEEECCCC-ccCC
Confidence 3344456667 7777777643 333322 11123333344444333333 556777777777765 4444
Q ss_pred chhhhccccCCCCCCcccEEEEccCCCCCCCcccccCCCCccEEeeccCcccccccccccccCCCCCCCCeeeeccCCCc
Q 047321 693 WNYRITRKENISIMPRLSSLQIMNCRKLKALPDYLLQTIALQKLSIYSCDLLEELPILEDRRTTDIPRLSSLAIWYCPKL 772 (807)
Q Consensus 693 ~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~lp~~l~~l~~L~~L~l~~c~~l~~lP~~~~~~~~~l~~L~~L~i~~c~~l 772 (807)
++ .+..+++|+.|++++| .+..+| .+..+++|+.|++++|......| ..+..+++|+.|++++|+ +
T Consensus 258 ~~-------~~~~l~~L~~L~l~~n-~l~~~~-~~~~l~~L~~L~L~~n~l~~~~~----~~l~~l~~L~~L~L~~n~-l 323 (347)
T 4fmz_A 258 IN-------AVKDLTKLKMLNVGSN-QISDIS-VLNNLSQLNSLFLNNNQLGNEDM----EVIGGLTNLTTLFLSQNH-I 323 (347)
T ss_dssp CG-------GGTTCTTCCEEECCSS-CCCCCG-GGGGCTTCSEEECCSSCCCGGGH----HHHHTCTTCSEEECCSSS-C
T ss_pred Ch-------hHhcCCCcCEEEccCC-ccCCCh-hhcCCCCCCEEECcCCcCCCcCh----hHhhccccCCEEEccCCc-c
Confidence 43 2446777888888777 666665 46677778888887765433334 455677788888888765 4
Q ss_pred ccCCccCCCCCcccccccccchhh
Q 047321 773 KVLPDYLLRTTTLQAGEQDYENEK 796 (807)
Q Consensus 773 ~~lP~~l~~l~~L~~L~l~~~~~~ 796 (807)
+.+|. +..++.|+.|++++|++.
T Consensus 324 ~~~~~-~~~l~~L~~L~l~~N~i~ 346 (347)
T 4fmz_A 324 TDIRP-LASLSKMDSADFANQVIK 346 (347)
T ss_dssp CCCGG-GGGCTTCSEESSSCC---
T ss_pred ccccC-hhhhhccceeehhhhccc
Confidence 55543 667778888888887764
No 7
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.78 E-value=2.3e-18 Score=185.85 Aligned_cols=275 Identities=18% Similarity=0.188 Sum_probs=213.0
Q ss_pred CcceEEEEEeeccCCCCccccCCCCceeEEEeCCCCCCCCCCCCccccccccCcccceeeecc----------ccCCccC
Q 047321 466 GDKVRHLGLKFEEGASFPMSIHGLNRLRTLLIYDQSPYNPSLSSSILPELFNKLACLRALVIR----------QSLRTLE 535 (807)
Q Consensus 466 ~~~~r~L~l~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~l~~~i~~LP~~i~~L~~L~~LdL~----------~~L~~L~ 535 (807)
.+++++|+++++.+..++ .+..+++|++|++++| .+..+|. +.++++|++|+++ .++.+|+
T Consensus 43 l~~L~~L~l~~~~i~~~~-~~~~~~~L~~L~l~~n-------~i~~~~~-~~~l~~L~~L~L~~n~i~~~~~~~~l~~L~ 113 (347)
T 4fmz_A 43 LESITKLVVAGEKVASIQ-GIEYLTNLEYLNLNGN-------QITDISP-LSNLVKLTNLYIGTNKITDISALQNLTNLR 113 (347)
T ss_dssp HTTCSEEECCSSCCCCCT-TGGGCTTCCEEECCSS-------CCCCCGG-GTTCTTCCEEECCSSCCCCCGGGTTCTTCS
T ss_pred cccccEEEEeCCccccch-hhhhcCCccEEEccCC-------ccccchh-hhcCCcCCEEEccCCcccCchHHcCCCcCC
Confidence 567999999999988665 4888999999999998 7888887 9999999999998 5678888
Q ss_pred eeEecCccCCCccccccccccccccCcccccCCCCCCChhHHHHhhccCCCCCCeEEEEeeccCCCcchhhhhchhhHHH
Q 047321 536 KFVVGGGVDGSNTCRLESLKNLQLLRECGIEGLGNVSHLDEAERLQLYNQQNLLRLRLRFGRVVDGEDEERRRKNEKDKQ 615 (807)
Q Consensus 536 ~l~~~~~~~~~~~~~i~~L~~L~~L~~L~i~~l~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~ 615 (807)
.+.++.+.+ ..+..+..+.+|+.|.+.+........ .+.++++|+.|+++.|.+
T Consensus 114 ~L~l~~n~i----~~~~~~~~l~~L~~L~l~~n~~~~~~~-----~~~~l~~L~~L~l~~~~~----------------- 167 (347)
T 4fmz_A 114 ELYLNEDNI----SDISPLANLTKMYSLNLGANHNLSDLS-----PLSNMTGLNYLTVTESKV----------------- 167 (347)
T ss_dssp EEECTTSCC----CCCGGGTTCTTCCEEECTTCTTCCCCG-----GGTTCTTCCEEECCSSCC-----------------
T ss_pred EEECcCCcc----cCchhhccCCceeEEECCCCCCccccc-----chhhCCCCcEEEecCCCc-----------------
Confidence 999988763 233347778888888887754444432 378899999999998874
Q ss_pred HHHhhcCCCCCCCCCCCcc-cceEeccCCcCceeeCcccCCCCCCC---CCCCCCCCCCCccccCcccccccccCCCccc
Q 047321 616 LLEALQPPLSHLPPLGKLP-LKKLELRDLESVKRVGNEFLGIEESS---EDDPSSSSSSPSVIAFPKLKSLEIDGMKELE 691 (807)
Q Consensus 616 ~l~~l~p~~~~lp~l~~L~-L~~L~L~~~~~l~~i~~~~~~~~~l~---~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~ 691 (807)
..++.++.++ |+.|+++++. +..++. +.....|. +.++.....++ +..+++|+.|+++++ .+.
T Consensus 168 ---------~~~~~~~~l~~L~~L~l~~n~-l~~~~~-~~~l~~L~~L~l~~n~l~~~~~-~~~~~~L~~L~l~~n-~l~ 234 (347)
T 4fmz_A 168 ---------KDVTPIANLTDLYSLSLNYNQ-IEDISP-LASLTSLHYFTAYVNQITDITP-VANMTRLNSLKIGNN-KIT 234 (347)
T ss_dssp ---------CCCGGGGGCTTCSEEECTTSC-CCCCGG-GGGCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECCSS-CCC
T ss_pred ---------CCchhhccCCCCCEEEccCCc-cccccc-ccCCCccceeecccCCCCCCch-hhcCCcCCEEEccCC-ccC
Confidence 3455577888 9999999864 555543 33333333 33333333333 678999999999986 555
Q ss_pred cchhhhccccCCCCCCcccEEEEccCCCCCCCcccccCCCCccEEeeccCcccccccccccccCCCCCCCCeeeeccCCC
Q 047321 692 EWNYRITRKENISIMPRLSSLQIMNCRKLKALPDYLLQTIALQKLSIYSCDLLEELPILEDRRTTDIPRLSSLAIWYCPK 771 (807)
Q Consensus 692 ~~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~lp~~l~~l~~L~~L~l~~c~~l~~lP~~~~~~~~~l~~L~~L~i~~c~~ 771 (807)
..+. +..+++|+.|++++| .+..++ .+..+++|++|++++| .+..+| .+..+++|+.|++++|..
T Consensus 235 ~~~~-------~~~l~~L~~L~l~~n-~l~~~~-~~~~l~~L~~L~l~~n-~l~~~~-----~~~~l~~L~~L~L~~n~l 299 (347)
T 4fmz_A 235 DLSP-------LANLSQLTWLEIGTN-QISDIN-AVKDLTKLKMLNVGSN-QISDIS-----VLNNLSQLNSLFLNNNQL 299 (347)
T ss_dssp CCGG-------GTTCTTCCEEECCSS-CCCCCG-GGTTCTTCCEEECCSS-CCCCCG-----GGGGCTTCSEEECCSSCC
T ss_pred CCcc-------hhcCCCCCEEECCCC-ccCCCh-hHhcCCCcCEEEccCC-ccCCCh-----hhcCCCCCCEEECcCCcC
Confidence 5542 567999999999999 788876 6888999999999997 577775 467899999999999876
Q ss_pred cccCCccCCCCCcccccccccchhhhhhhhhh
Q 047321 772 LKVLPDYLLRTTTLQAGEQDYENEKFSQRIAK 803 (807)
Q Consensus 772 l~~lP~~l~~l~~L~~L~l~~~~~~~~~~~~~ 803 (807)
....|..+..+++|+.|++++|++....+++.
T Consensus 300 ~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~ 331 (347)
T 4fmz_A 300 GNEDMEVIGGLTNLTTLFLSQNHITDIRPLAS 331 (347)
T ss_dssp CGGGHHHHHTCTTCSEEECCSSSCCCCGGGGG
T ss_pred CCcChhHhhccccCCEEEccCCccccccChhh
Confidence 55666888999999999999999876655443
No 8
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.77 E-value=1.5e-18 Score=195.90 Aligned_cols=283 Identities=18% Similarity=0.183 Sum_probs=175.9
Q ss_pred CCcceEEEEEeeccCCCC-ccccCCCCceeEEEeCCCCCCCCCCCCccc-cccccCcccceeeecc------------cc
Q 047321 465 FGDKVRHLGLKFEEGASF-PMSIHGLNRLRTLLIYDQSPYNPSLSSSIL-PELFNKLACLRALVIR------------QS 530 (807)
Q Consensus 465 ~~~~~r~L~l~~~~~~~~-~~~~~~l~~Lr~L~l~~~~~~~l~~~i~~L-P~~i~~L~~L~~LdL~------------~~ 530 (807)
.+..+++|++++|.+..+ +..|.++++|++|++++| .+..+ |..++++++|++|+|+ .+
T Consensus 30 ~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-------~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 102 (477)
T 2id5_A 30 IPTETRLLDLGKNRIKTLNQDEFASFPHLEELELNEN-------IVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTG 102 (477)
T ss_dssp CCTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTS-------CCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTT
T ss_pred CCCCCcEEECCCCccceECHhHccCCCCCCEEECCCC-------ccCEeChhhhhCCccCCEEECCCCcCCccCcccccC
Confidence 366889999999888774 567888999999999987 66666 7778888888888887 35
Q ss_pred CCccCeeEecCccCCCccccccccccccccCcccccCCCCCCChhHHHHhhccCCCCCCeEEEEeeccCCCcchhhhhch
Q 047321 531 LRTLEKFVVGGGVDGSNTCRLESLKNLQLLRECGIEGLGNVSHLDEAERLQLYNQQNLLRLRLRFGRVVDGEDEERRRKN 610 (807)
Q Consensus 531 L~~L~~l~~~~~~~~~~~~~i~~L~~L~~L~~L~i~~l~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~ 610 (807)
+.+|+.++++.+.+.. .....+..+.+|+.|.+.+-. + .......+.++++|+.|+++.|.+.
T Consensus 103 l~~L~~L~Ls~n~i~~--~~~~~~~~l~~L~~L~l~~n~-l---~~~~~~~~~~l~~L~~L~l~~n~l~----------- 165 (477)
T 2id5_A 103 LSNLTKLDISENKIVI--LLDYMFQDLYNLKSLEVGDND-L---VYISHRAFSGLNSLEQLTLEKCNLT----------- 165 (477)
T ss_dssp CTTCCEEECTTSCCCE--ECTTTTTTCTTCCEEEECCTT-C---CEECTTSSTTCTTCCEEEEESCCCS-----------
T ss_pred CCCCCEEECCCCcccc--CChhHccccccCCEEECCCCc-c---ceeChhhccCCCCCCEEECCCCcCc-----------
Confidence 5667777776664211 112334556666666555411 1 1111124666777777777777642
Q ss_pred hhHHHHHHhhcCCCCCCCC--CCCcc-cceEeccCCcCceeeCc-ccCCCCCCCCCC---CC-CCCCCCccccCcccccc
Q 047321 611 EKDKQLLEALQPPLSHLPP--LGKLP-LKKLELRDLESVKRVGN-EFLGIEESSEDD---PS-SSSSSPSVIAFPKLKSL 682 (807)
Q Consensus 611 ~~~~~~l~~l~p~~~~lp~--l~~L~-L~~L~L~~~~~l~~i~~-~~~~~~~l~~~~---~~-~~~~~~~~~~l~~L~~L 682 (807)
.+|. ++.++ |+.|+|+++. +..++. .+.....|..++ +. ....++......+|+.|
T Consensus 166 ---------------~~~~~~l~~l~~L~~L~l~~n~-i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L 229 (477)
T 2id5_A 166 ---------------SIPTEALSHLHGLIVLRLRHLN-INAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSL 229 (477)
T ss_dssp ---------------SCCHHHHTTCTTCCEEEEESCC-CCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEE
T ss_pred ---------------ccChhHhcccCCCcEEeCCCCc-CcEeChhhcccCcccceeeCCCCccccccCcccccCccccEE
Confidence 2221 34445 5555555433 333322 111111111111 11 01111122234577788
Q ss_pred cccCCCccccchhhhccccCCCCCCcccEEEEccCCCCCCCcc-cccCCCCccEEeeccCcccccc-cccccccCCCCCC
Q 047321 683 EIDGMKELEEWNYRITRKENISIMPRLSSLQIMNCRKLKALPD-YLLQTIALQKLSIYSCDLLEEL-PILEDRRTTDIPR 760 (807)
Q Consensus 683 ~l~~~~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~lp~-~l~~l~~L~~L~l~~c~~l~~l-P~~~~~~~~~l~~ 760 (807)
+++++ .+..++. ..+..+++|+.|++++| .+..++. .+..+++|++|++++|. +..+ | ..+..+++
T Consensus 230 ~l~~n-~l~~~~~-----~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~----~~~~~l~~ 297 (477)
T 2id5_A 230 SITHC-NLTAVPY-----LAVRHLVYLRFLNLSYN-PISTIEGSMLHELLRLQEIQLVGGQ-LAVVEP----YAFRGLNY 297 (477)
T ss_dssp EEESS-CCCSCCH-----HHHTTCTTCCEEECCSS-CCCEECTTSCTTCTTCCEEECCSSC-CSEECT----TTBTTCTT
T ss_pred ECcCC-cccccCH-----HHhcCccccCeeECCCC-cCCccChhhccccccCCEEECCCCc-cceECH----HHhcCccc
Confidence 87775 4555543 23456788888888888 4665543 46778888888888864 4444 4 56778899
Q ss_pred CCeeeeccCCCcccCC-ccCCCCCcccccccccchhhhhhh
Q 047321 761 LSSLAIWYCPKLKVLP-DYLLRTTTLQAGEQDYENEKFSQR 800 (807)
Q Consensus 761 L~~L~i~~c~~l~~lP-~~l~~l~~L~~L~l~~~~~~~~~~ 800 (807)
|+.|++++| .++.+| ..+..+++|+.|++++|++...-.
T Consensus 298 L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~l~c~c~ 337 (477)
T 2id5_A 298 LRVLNVSGN-QLTTLEESVFHSVGNLETLILDSNPLACDCR 337 (477)
T ss_dssp CCEEECCSS-CCSCCCGGGBSCGGGCCEEECCSSCEECSGG
T ss_pred CCEEECCCC-cCceeCHhHcCCCcccCEEEccCCCccCccc
Confidence 999999985 577777 456888999999999998865433
No 9
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.77 E-value=8.7e-19 Score=209.35 Aligned_cols=98 Identities=13% Similarity=0.009 Sum_probs=86.6
Q ss_pred CCCCCCcccEEEEccCCCCCCCcccccCCCCccEEeeccCcccccccccccccCCCCCCCCeeeeccCCCcccCCccCCC
Q 047321 702 NISIMPRLSSLQIMNCRKLKALPDYLLQTIALQKLSIYSCDLLEELPILEDRRTTDIPRLSSLAIWYCPKLKVLPDYLLR 781 (807)
Q Consensus 702 ~~~~l~~L~~L~l~~c~~L~~lp~~l~~l~~L~~L~l~~c~~l~~lP~~~~~~~~~l~~L~~L~i~~c~~l~~lP~~l~~ 781 (807)
.+..+++|+.|++++|.-...+|..++.+++|+.|++++|.-.+.+| ..++++++|+.|++++|...+.+|..+.+
T Consensus 627 ~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip----~~l~~L~~L~~LdLs~N~l~g~ip~~l~~ 702 (768)
T 3rgz_A 627 TFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIP----DEVGDLRGLNILDLSSNKLDGRIPQAMSA 702 (768)
T ss_dssp SCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCC----GGGGGCTTCCEEECCSSCCEECCCGGGGG
T ss_pred hhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCC----hHHhCCCCCCEEECCCCcccCcCChHHhC
Confidence 45568899999999996556899999999999999999987667899 88999999999999998877799999999
Q ss_pred CCcccccccccchhhhhhhhhh
Q 047321 782 TTTLQAGEQDYENEKFSQRIAK 803 (807)
Q Consensus 782 l~~L~~L~l~~~~~~~~~~~~~ 803 (807)
+++|+.|++++|++.+++|-..
T Consensus 703 l~~L~~L~ls~N~l~g~iP~~~ 724 (768)
T 3rgz_A 703 LTMLTEIDLSNNNLSGPIPEMG 724 (768)
T ss_dssp CCCCSEEECCSSEEEEECCSSS
T ss_pred CCCCCEEECcCCcccccCCCch
Confidence 9999999999999988777443
No 10
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.76 E-value=3.7e-18 Score=202.90 Aligned_cols=118 Identities=18% Similarity=0.194 Sum_probs=82.8
Q ss_pred CcceEEEEEeeccCCC------------------CccccC--CCCceeEEEeCCCCCCCCCCCCccccccccCcccceee
Q 047321 466 GDKVRHLGLKFEEGAS------------------FPMSIH--GLNRLRTLLIYDQSPYNPSLSSSILPELFNKLACLRAL 525 (807)
Q Consensus 466 ~~~~r~L~l~~~~~~~------------------~~~~~~--~l~~Lr~L~l~~~~~~~l~~~i~~LP~~i~~L~~L~~L 525 (807)
..++++|++++|.+.. +|..+. ++++|++|++++|. ....+|..+++|++|++|
T Consensus 447 L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~------l~~~iP~~l~~L~~L~~L 520 (876)
T 4ecn_A 447 LTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCP------NMTQLPDFLYDLPELQSL 520 (876)
T ss_dssp CTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCT------TCCSCCGGGGGCSSCCEE
T ss_pred CCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCC------CCccChHHHhCCCCCCEE
Confidence 4678999999998887 888877 99999999999874 467788888888888888
Q ss_pred ecccc--CC-------------------ccCeeEecCccCCCcccccc--ccccccccCcccccCCCCCCChhHHHHhhc
Q 047321 526 VIRQS--LR-------------------TLEKFVVGGGVDGSNTCRLE--SLKNLQLLRECGIEGLGNVSHLDEAERLQL 582 (807)
Q Consensus 526 dL~~~--L~-------------------~L~~l~~~~~~~~~~~~~i~--~L~~L~~L~~L~i~~l~~~~~~~~~~~~~l 582 (807)
+|+.+ +. +|+.+.++.+.+. ..+. .+.++.+|+.|.+.+.. +..++ .+
T Consensus 521 ~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~---~ip~~~~l~~L~~L~~L~Ls~N~-l~~lp-----~~ 591 (876)
T 4ecn_A 521 NIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE---EFPASASLQKMVKLGLLDCVHNK-VRHLE-----AF 591 (876)
T ss_dssp ECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC---BCCCHHHHTTCTTCCEEECTTSC-CCBCC-----CC
T ss_pred ECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC---ccCChhhhhcCCCCCEEECCCCC-cccch-----hh
Confidence 88733 33 5777887777632 1222 36666667766665421 11111 46
Q ss_pred cCCCCCCeEEEEeecc
Q 047321 583 YNQQNLLRLRLRFGRV 598 (807)
Q Consensus 583 ~~l~~L~~L~L~~~~~ 598 (807)
.++++|+.|+|++|.+
T Consensus 592 ~~L~~L~~L~Ls~N~l 607 (876)
T 4ecn_A 592 GTNVKLTDLKLDYNQI 607 (876)
T ss_dssp CTTSEESEEECCSSCC
T ss_pred cCCCcceEEECcCCcc
Confidence 6777777777777764
No 11
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.75 E-value=1.5e-18 Score=194.82 Aligned_cols=305 Identities=18% Similarity=0.170 Sum_probs=195.3
Q ss_pred CCcceEEEEEeeccCCCC-ccccCCCCceeEEEeCCCCCCCCCCCCc-cc-cccccCcccceeeecc------------c
Q 047321 465 FGDKVRHLGLKFEEGASF-PMSIHGLNRLRTLLIYDQSPYNPSLSSS-IL-PELFNKLACLRALVIR------------Q 529 (807)
Q Consensus 465 ~~~~~r~L~l~~~~~~~~-~~~~~~l~~Lr~L~l~~~~~~~l~~~i~-~L-P~~i~~L~~L~~LdL~------------~ 529 (807)
.+..+++|++++|.+..+ |..+.++++|++|++++| .+. .+ |..++++++|++|+|+ .
T Consensus 28 l~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n-------~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~ 100 (455)
T 3v47_A 28 LPAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQ-------TPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFN 100 (455)
T ss_dssp CCTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCC-------STTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTT
T ss_pred CCCccCEEEecCCccCcCChhHhccCccccEEECcCC-------cccceECcccccccccCCEEeCCCCccCccChhhcc
Confidence 367899999999998874 778999999999999997 443 55 5678999999999998 5
Q ss_pred cCCccCeeEecCccCCCccccccc--cccccccCcccccCC--CCCCChhHHHHhhccCCCCCCeEEEEeeccCCCcchh
Q 047321 530 SLRTLEKFVVGGGVDGSNTCRLES--LKNLQLLRECGIEGL--GNVSHLDEAERLQLYNQQNLLRLRLRFGRVVDGEDEE 605 (807)
Q Consensus 530 ~L~~L~~l~~~~~~~~~~~~~i~~--L~~L~~L~~L~i~~l--~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~ 605 (807)
++.+|+.+.++.+.+.. ..+.. +..+.+|+.|.+.+. ..+.. ...+.++++|+.|++++|.+.......
T Consensus 101 ~l~~L~~L~L~~n~l~~--~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-----~~~~~~l~~L~~L~L~~n~l~~~~~~~ 173 (455)
T 3v47_A 101 GLANLEVLTLTQCNLDG--AVLSGNFFKPLTSLEMLVLRDNNIKKIQP-----ASFFLNMRRFHVLDLTFNKVKSICEED 173 (455)
T ss_dssp TCTTCCEEECTTSCCBT--HHHHSSTTTTCTTCCEEECCSSBCCSCCC-----CGGGGGCTTCCEEECTTCCBSCCCTTT
T ss_pred CcccCCEEeCCCCCCCc--cccCcccccCcccCCEEECCCCccCccCc-----ccccCCCCcccEEeCCCCcccccChhh
Confidence 67778888887765211 11222 666777777666542 22111 012677888999999888753221100
Q ss_pred hhhchhhHH-HHHHhhcCCC---CCCC----------CCCCcc-cceEeccCCcCceeeCccc-----------------
Q 047321 606 RRRKNEKDK-QLLEALQPPL---SHLP----------PLGKLP-LKKLELRDLESVKRVGNEF----------------- 653 (807)
Q Consensus 606 ~~~~~~~~~-~~l~~l~p~~---~~lp----------~l~~L~-L~~L~L~~~~~l~~i~~~~----------------- 653 (807)
..... ..+..+.-.. ..++ .+..++ |++|+|+++.....++..+
T Consensus 174 ----l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~ 249 (455)
T 3v47_A 174 ----LLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNS 249 (455)
T ss_dssp ----SGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTC
T ss_pred ----hhccccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccc
Confidence 00000 0000000000 1111 123457 8888888763211111000
Q ss_pred -------------------------CCCCCCCCCCCCCCC-CCCccccCcccccccccCCCccccchhhhccccCCCCCC
Q 047321 654 -------------------------LGIEESSEDDPSSSS-SSPSVIAFPKLKSLEIDGMKELEEWNYRITRKENISIMP 707 (807)
Q Consensus 654 -------------------------~~~~~l~~~~~~~~~-~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~l~ 707 (807)
.....+.+.++.... .+..+..+++|+.|+++++ .+...+. ..+..++
T Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~-----~~~~~l~ 323 (455)
T 3v47_A 250 YNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQN-EINKIDD-----NAFWGLT 323 (455)
T ss_dssp TTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTS-CCCEECT-----TTTTTCT
T ss_pred cccccccchhhhccCcccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCC-cccccCh-----hHhcCcc
Confidence 011122222222222 2334567888999998885 4555432 3566789
Q ss_pred cccEEEEccCCCCCCC-cccccCCCCccEEeeccCcccccc-cccccccCCCCCCCCeeeeccCCCcccCCc-cCCCCCc
Q 047321 708 RLSSLQIMNCRKLKAL-PDYLLQTIALQKLSIYSCDLLEEL-PILEDRRTTDIPRLSSLAIWYCPKLKVLPD-YLLRTTT 784 (807)
Q Consensus 708 ~L~~L~l~~c~~L~~l-p~~l~~l~~L~~L~l~~c~~l~~l-P~~~~~~~~~l~~L~~L~i~~c~~l~~lP~-~l~~l~~ 784 (807)
+|+.|++++| .+..+ |..+..+++|++|++++|. +..+ | ..+..+++|++|++++| .++.+|. .+..+++
T Consensus 324 ~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~----~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~ 396 (455)
T 3v47_A 324 HLLKLNLSQN-FLGSIDSRMFENLDKLEVLDLSYNH-IRALGD----QSFLGLPNLKELALDTN-QLKSVPDGIFDRLTS 396 (455)
T ss_dssp TCCEEECCSS-CCCEECGGGGTTCTTCCEEECCSSC-CCEECT----TTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTT
T ss_pred cCCEEECCCC-ccCCcChhHhcCcccCCEEECCCCc-ccccCh----hhccccccccEEECCCC-ccccCCHhHhccCCc
Confidence 9999999999 66666 6678889999999999975 5554 5 67788999999999985 5777774 5689999
Q ss_pred ccccccccchhhhhhh
Q 047321 785 LQAGEQDYENEKFSQR 800 (807)
Q Consensus 785 L~~L~l~~~~~~~~~~ 800 (807)
|+.|++++|++....|
T Consensus 397 L~~L~l~~N~l~~~~~ 412 (455)
T 3v47_A 397 LQKIWLHTNPWDCSCP 412 (455)
T ss_dssp CCEEECCSSCBCCCTT
T ss_pred ccEEEccCCCcccCCC
Confidence 9999999999987665
No 12
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.75 E-value=3.3e-18 Score=182.66 Aligned_cols=214 Identities=20% Similarity=0.231 Sum_probs=174.0
Q ss_pred CCCceeEEEeCCCCCCCCCCCCccccccccCcccceeeeccccCCccCeeEecCccCCCccccccccccccccCcccccC
Q 047321 488 GLNRLRTLLIYDQSPYNPSLSSSILPELFNKLACLRALVIRQSLRTLEKFVVGGGVDGSNTCRLESLKNLQLLRECGIEG 567 (807)
Q Consensus 488 ~l~~Lr~L~l~~~~~~~l~~~i~~LP~~i~~L~~L~~LdL~~~L~~L~~l~~~~~~~~~~~~~i~~L~~L~~L~~L~i~~ 567 (807)
...++++|+++++ .+..+|..+++|++|++|+|+.+ .+..+
T Consensus 79 ~~~~l~~L~L~~n-------~l~~lp~~l~~l~~L~~L~L~~n-------------------~l~~l------------- 119 (328)
T 4fcg_A 79 TQPGRVALELRSV-------PLPQFPDQAFRLSHLQHMTIDAA-------------------GLMEL------------- 119 (328)
T ss_dssp TSTTCCEEEEESS-------CCSSCCSCGGGGTTCSEEEEESS-------------------CCCCC-------------
T ss_pred cccceeEEEccCC-------CchhcChhhhhCCCCCEEECCCC-------------------Cccch-------------
Confidence 3578999999998 88899999999999999999721 11111
Q ss_pred CCCCCChhHHHHhhccCCCCCCeEEEEeeccCCCcchhhhhchhhHHHHHHhhcCCCCCCCC-CCCcc-cceEeccCCcC
Q 047321 568 LGNVSHLDEAERLQLYNQQNLLRLRLRFGRVVDGEDEERRRKNEKDKQLLEALQPPLSHLPP-LGKLP-LKKLELRDLES 645 (807)
Q Consensus 568 l~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~l~p~~~~lp~-l~~L~-L~~L~L~~~~~ 645 (807)
+. .+.++++|+.|+|++|.+ ..+|. ++.++ |++|+|++|+.
T Consensus 120 ----p~-------~~~~l~~L~~L~Ls~n~l--------------------------~~lp~~l~~l~~L~~L~L~~n~~ 162 (328)
T 4fcg_A 120 ----PD-------TMQQFAGLETLTLARNPL--------------------------RALPASIASLNRLRELSIRACPE 162 (328)
T ss_dssp ----CS-------CGGGGTTCSEEEEESCCC--------------------------CCCCGGGGGCTTCCEEEEEEETT
T ss_pred ----hH-------HHhccCCCCEEECCCCcc--------------------------ccCcHHHhcCcCCCEEECCCCCC
Confidence 11 245667899999998875 45564 78899 99999999888
Q ss_pred ceeeCcccCCCCCCCCCCCCCCCCCCccccCcccccccccCCCccccchhhhccccCCCCCCcccEEEEccCCCCCCCcc
Q 047321 646 VKRVGNEFLGIEESSEDDPSSSSSSPSVIAFPKLKSLEIDGMKELEEWNYRITRKENISIMPRLSSLQIMNCRKLKALPD 725 (807)
Q Consensus 646 l~~i~~~~~~~~~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~lp~ 725 (807)
++.++..+.... .+..+..+++|+.|+++++ .+..+|. .+..+++|+.|++++| .+..+|.
T Consensus 163 ~~~~p~~~~~~~-----------~~~~~~~l~~L~~L~L~~n-~l~~lp~------~l~~l~~L~~L~L~~N-~l~~l~~ 223 (328)
T 4fcg_A 163 LTELPEPLASTD-----------ASGEHQGLVNLQSLRLEWT-GIRSLPA------SIANLQNLKSLKIRNS-PLSALGP 223 (328)
T ss_dssp CCCCCSCSEEEC------------CCCEEESTTCCEEEEEEE-CCCCCCG------GGGGCTTCCEEEEESS-CCCCCCG
T ss_pred ccccChhHhhcc-----------chhhhccCCCCCEEECcCC-CcCcchH------hhcCCCCCCEEEccCC-CCCcCch
Confidence 877776543210 1112446999999999985 6666654 4668999999999999 7888999
Q ss_pred cccCCCCccEEeeccCcccccccccccccCCCCCCCCeeeeccCCCcccCCccCCCCCcccccccccchhhhhhh
Q 047321 726 YLLQTIALQKLSIYSCDLLEELPILEDRRTTDIPRLSSLAIWYCPKLKVLPDYLLRTTTLQAGEQDYENEKFSQR 800 (807)
Q Consensus 726 ~l~~l~~L~~L~l~~c~~l~~lP~~~~~~~~~l~~L~~L~i~~c~~l~~lP~~l~~l~~L~~L~l~~~~~~~~~~ 800 (807)
.+..+++|++|++++|+..+.+| ..+..+++|+.|++++|+.++.+|..+.++++|+.|++++|++....|
T Consensus 224 ~l~~l~~L~~L~Ls~n~~~~~~p----~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP 294 (328)
T 4fcg_A 224 AIHHLPKLEELDLRGCTALRNYP----PIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLP 294 (328)
T ss_dssp GGGGCTTCCEEECTTCTTCCBCC----CCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCC
T ss_pred hhccCCCCCEEECcCCcchhhhH----HHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhcc
Confidence 99999999999999999999999 788899999999999999999999999999999999999999876555
No 13
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.74 E-value=3.7e-18 Score=203.89 Aligned_cols=309 Identities=15% Similarity=0.050 Sum_probs=194.3
Q ss_pred CcceEEEEEeeccCCCCccccCCCCceeEEEeCCCCCCCCCCCCc-cccccccCcccceeeecc----------ccCCcc
Q 047321 466 GDKVRHLGLKFEEGASFPMSIHGLNRLRTLLIYDQSPYNPSLSSS-ILPELFNKLACLRALVIR----------QSLRTL 534 (807)
Q Consensus 466 ~~~~r~L~l~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~l~~~i~-~LP~~i~~L~~L~~LdL~----------~~L~~L 534 (807)
..++++|++++|.+...+..+.++++|++|++++| .+. .+|..++++++|++|+++ ..+.+|
T Consensus 199 l~~L~~L~Ls~n~l~~~~~~l~~l~~L~~L~Ls~n-------~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~L 271 (768)
T 3rgz_A 199 CVNLEFLDVSSNNFSTGIPFLGDCSALQHLDISGN-------KLSGDFSRAISTCTELKLLNISSNQFVGPIPPLPLKSL 271 (768)
T ss_dssp CTTCCEEECCSSCCCSCCCBCTTCCSCCEEECCSS-------CCCSCHHHHTTTCSSCCEEECCSSCCEESCCCCCCTTC
T ss_pred CCcCCEEECcCCcCCCCCcccccCCCCCEEECcCC-------cCCCcccHHHhcCCCCCEEECCCCcccCccCccccCCC
Confidence 46778888888877664444778888888888876 333 556677777777777776 234445
Q ss_pred CeeEecCccCC-C----------------------ccccccccccccccCcccccCCCCCCChh-HHHHhhccCCCCCCe
Q 047321 535 EKFVVGGGVDG-S----------------------NTCRLESLKNLQLLRECGIEGLGNVSHLD-EAERLQLYNQQNLLR 590 (807)
Q Consensus 535 ~~l~~~~~~~~-~----------------------~~~~i~~L~~L~~L~~L~i~~l~~~~~~~-~~~~~~l~~l~~L~~ 590 (807)
+.+.+..+... . .+..+..+..+.+|+.|.+.+.. .. ......+.++++|+.
T Consensus 272 ~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~----l~~~ip~~~l~~l~~L~~ 347 (768)
T 3rgz_A 272 QYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNN----FSGELPMDTLLKMRGLKV 347 (768)
T ss_dssp CEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSE----EEEECCHHHHTTCTTCCE
T ss_pred CEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCCccEEECCCCc----ccCcCCHHHHhcCCCCCE
Confidence 55555444310 0 01112233444444444444311 11 001112556667777
Q ss_pred EEEEeeccCC-CcchhhhhchhhHHHHHHhhcCCC----CCCC-CCCC--cc-cceEeccCCcCceeeCcccCCCCCCCC
Q 047321 591 LRLRFGRVVD-GEDEERRRKNEKDKQLLEALQPPL----SHLP-PLGK--LP-LKKLELRDLESVKRVGNEFLGIEESSE 661 (807)
Q Consensus 591 L~L~~~~~~~-~~~~~~~~~~~~~~~~l~~l~p~~----~~lp-~l~~--L~-L~~L~L~~~~~l~~i~~~~~~~~~l~~ 661 (807)
|+++.|.+.. .+.. .......|+.+.-.. ..+| .+.. ++ |++|++++|.....++..+.....|..
T Consensus 348 L~Ls~n~l~~~~p~~-----l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~ 422 (768)
T 3rgz_A 348 LDLSFNEFSGELPES-----LTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVS 422 (768)
T ss_dssp EECCSSEEEECCCTT-----HHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCE
T ss_pred EeCcCCccCccccHH-----HHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHhcCCCCCE
Confidence 7776665320 0000 000000011110000 1122 2444 66 888888887644466666655555544
Q ss_pred CCCC---C-CCCCCccccCcccccccccCCCccccchhhhccccCCCCCCcccEEEEccCCCCCCCcccccCCCCccEEe
Q 047321 662 DDPS---S-SSSSPSVIAFPKLKSLEIDGMKELEEWNYRITRKENISIMPRLSSLQIMNCRKLKALPDYLLQTIALQKLS 737 (807)
Q Consensus 662 ~~~~---~-~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~lp~~l~~l~~L~~L~ 737 (807)
++.+ . ...|..+..+++|+.|+++++.-....+. .+..+++|+.|++++|.-...+|..+..+++|+.|+
T Consensus 423 L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~------~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~ 496 (768)
T 3rgz_A 423 LHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQ------ELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWIS 496 (768)
T ss_dssp EECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCG------GGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEE
T ss_pred EECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCH------HHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEE
Confidence 3333 2 24566677889999999988643334443 456789999999999965558899999999999999
Q ss_pred eccCcccccccccccccCCCCCCCCeeeeccCCCcccCCccCCCCCcccccccccchhhhhhh
Q 047321 738 IYSCDLLEELPILEDRRTTDIPRLSSLAIWYCPKLKVLPDYLLRTTTLQAGEQDYENEKFSQR 800 (807)
Q Consensus 738 l~~c~~l~~lP~~~~~~~~~l~~L~~L~i~~c~~l~~lP~~l~~l~~L~~L~l~~~~~~~~~~ 800 (807)
+++|...+.+| ..+..+++|+.|++++|...+.+|..++++++|+.|++++|++..+.|
T Consensus 497 L~~N~l~~~~p----~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip 555 (768)
T 3rgz_A 497 LSNNRLTGEIP----KWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIP 555 (768)
T ss_dssp CCSSCCCSCCC----GGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCC
T ss_pred ccCCccCCcCC----hHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCC
Confidence 99987666888 778899999999999988778999999999999999999999876655
No 14
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.74 E-value=7.1e-18 Score=185.09 Aligned_cols=294 Identities=17% Similarity=0.149 Sum_probs=178.6
Q ss_pred cceEEEEEeeccCCCCccc-cCCCCceeEEEeCCCCCCCCCCCCcccc-ccccCcccceeeecc------------ccCC
Q 047321 467 DKVRHLGLKFEEGASFPMS-IHGLNRLRTLLIYDQSPYNPSLSSSILP-ELFNKLACLRALVIR------------QSLR 532 (807)
Q Consensus 467 ~~~r~L~l~~~~~~~~~~~-~~~l~~Lr~L~l~~~~~~~l~~~i~~LP-~~i~~L~~L~~LdL~------------~~L~ 532 (807)
.+++++++.++.+..+|.. +..+++|++|+++++ .+..+| ..++++++|++|+|+ .++.
T Consensus 45 ~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n-------~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~ 117 (390)
T 3o6n_A 45 NNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDL-------QIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVP 117 (390)
T ss_dssp CCCSEEEEESCEESEECTHHHHHCCCCSEEECTTS-------CCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCT
T ss_pred CCceEEEecCCchhhCChhHhcccccCcEEECCCC-------cccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCC
Confidence 5566777776666655544 456667777777766 555554 356666666666665 3455
Q ss_pred ccCeeEecCccCCCccccccccccccccCcccccCCCCCCChhHHHHhhccCCCCCCeEEEEeeccCCCcchhhhhchhh
Q 047321 533 TLEKFVVGGGVDGSNTCRLESLKNLQLLRECGIEGLGNVSHLDEAERLQLYNQQNLLRLRLRFGRVVDGEDEERRRKNEK 612 (807)
Q Consensus 533 ~L~~l~~~~~~~~~~~~~i~~L~~L~~L~~L~i~~l~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~ 612 (807)
+|+.++++.+.+...+. ..+.++.+|+.|.+.+.. +. ......+.++++|+.|+++.|.+......
T Consensus 118 ~L~~L~L~~n~l~~l~~--~~~~~l~~L~~L~L~~n~-l~---~~~~~~~~~l~~L~~L~l~~n~l~~~~~~-------- 183 (390)
T 3o6n_A 118 LLTVLVLERNDLSSLPR--GIFHNTPKLTTLSMSNNN-LE---RIEDDTFQATTSLQNLQLSSNRLTHVDLS-------- 183 (390)
T ss_dssp TCCEEECCSSCCCCCCT--TTTTTCTTCCEEECCSSC-CC---BCCTTTTSSCTTCCEEECCSSCCSBCCGG--------
T ss_pred CCCEEECCCCccCcCCH--HHhcCCCCCcEEECCCCc-cC---ccChhhccCCCCCCEEECCCCcCCccccc--------
Confidence 56666666554221111 113455566666555421 11 11112366777788888777764221100
Q ss_pred HHHHHHhhcCCCCCCCCCCCcc-cceEeccCCcCceeeCccc-CCCCCCCCCCCCCCCCCCccccCcccccccccCCCcc
Q 047321 613 DKQLLEALQPPLSHLPPLGKLP-LKKLELRDLESVKRVGNEF-LGIEESSEDDPSSSSSSPSVIAFPKLKSLEIDGMKEL 690 (807)
Q Consensus 613 ~~~~l~~l~p~~~~lp~l~~L~-L~~L~L~~~~~l~~i~~~~-~~~~~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l 690 (807)
....|..+.-....+..+...+ |+.|+++++. +..++... .....|.+.++.... ++.+..+++|+.|+++++ .+
T Consensus 184 ~l~~L~~L~l~~n~l~~~~~~~~L~~L~l~~n~-l~~~~~~~~~~L~~L~l~~n~l~~-~~~l~~l~~L~~L~Ls~n-~l 260 (390)
T 3o6n_A 184 LIPSLFHANVSYNLLSTLAIPIAVEELDASHNS-INVVRGPVNVELTILKLQHNNLTD-TAWLLNYPGLVEVDLSYN-EL 260 (390)
T ss_dssp GCTTCSEEECCSSCCSEEECCSSCSEEECCSSC-CCEEECCCCSSCCEEECCSSCCCC-CGGGGGCTTCSEEECCSS-CC
T ss_pred cccccceeecccccccccCCCCcceEEECCCCe-eeeccccccccccEEECCCCCCcc-cHHHcCCCCccEEECCCC-cC
Confidence 0000000000001111122234 7777776643 44443322 233333344443333 245678899999999986 45
Q ss_pred ccchhhhccccCCCCCCcccEEEEccCCCCCCCcccccCCCCccEEeeccCcccccccccccccCCCCCCCCeeeeccCC
Q 047321 691 EEWNYRITRKENISIMPRLSSLQIMNCRKLKALPDYLLQTIALQKLSIYSCDLLEELPILEDRRTTDIPRLSSLAIWYCP 770 (807)
Q Consensus 691 ~~~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~lp~~l~~l~~L~~L~l~~c~~l~~lP~~~~~~~~~l~~L~~L~i~~c~ 770 (807)
..... ..+..+++|+.|++++| +++.+|..+..+++|++|++++| .+..+| ..+..+++|+.|++++|+
T Consensus 261 ~~~~~-----~~~~~l~~L~~L~L~~n-~l~~~~~~~~~l~~L~~L~L~~n-~l~~~~----~~~~~l~~L~~L~L~~N~ 329 (390)
T 3o6n_A 261 EKIMY-----HPFVKMQRLERLYISNN-RLVALNLYGQPIPTLKVLDLSHN-HLLHVE----RNQPQFDRLENLYLDHNS 329 (390)
T ss_dssp CEEES-----GGGTTCSSCCEEECCSS-CCCEEECSSSCCTTCCEEECCSS-CCCCCG----GGHHHHTTCSEEECCSSC
T ss_pred CCcCh-----hHccccccCCEEECCCC-cCcccCcccCCCCCCCEEECCCC-cceecC----ccccccCcCCEEECCCCc
Confidence 55432 35667999999999998 78889988888999999999997 677888 666788999999999865
Q ss_pred CcccCCccCCCCCcccccccccchhhhh
Q 047321 771 KLKVLPDYLLRTTTLQAGEQDYENEKFS 798 (807)
Q Consensus 771 ~l~~lP~~l~~l~~L~~L~l~~~~~~~~ 798 (807)
++.+| +..+++|+.|++++|++...
T Consensus 330 -i~~~~--~~~~~~L~~L~l~~N~~~~~ 354 (390)
T 3o6n_A 330 -IVTLK--LSTHHTLKNLTLSHNDWDCN 354 (390)
T ss_dssp -CCCCC--CCTTCCCSEEECCSSCEEHH
T ss_pred -cceeC--chhhccCCEEEcCCCCccch
Confidence 67776 77889999999999998764
No 15
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.73 E-value=3e-17 Score=184.52 Aligned_cols=289 Identities=17% Similarity=0.272 Sum_probs=167.9
Q ss_pred CcceEEEEEeeccCCCCccccCCCCceeEEEeCCCCCCCCCCCCccccccccCcccceeeecc----------ccCCccC
Q 047321 466 GDKVRHLGLKFEEGASFPMSIHGLNRLRTLLIYDQSPYNPSLSSSILPELFNKLACLRALVIR----------QSLRTLE 535 (807)
Q Consensus 466 ~~~~r~L~l~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~l~~~i~~LP~~i~~L~~L~~LdL~----------~~L~~L~ 535 (807)
...+++|++++|.+..++. +.++++|++|++++| .+..+|. ++++++|++|+++ .++.+|+
T Consensus 67 l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~l~~n-------~l~~~~~-~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~ 137 (466)
T 1o6v_A 67 LNNLTQINFSNNQLTDITP-LKNLTKLVDILMNNN-------QIADITP-LANLTNLTGLTLFNNQITDIDPLKNLTNLN 137 (466)
T ss_dssp CTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSS-------CCCCCGG-GTTCTTCCEEECCSSCCCCCGGGTTCTTCS
T ss_pred hcCCCEEECCCCccCCchh-hhccccCCEEECCCC-------ccccChh-hcCCCCCCEEECCCCCCCCChHHcCCCCCC
Confidence 4567777777777766555 777777777777776 5566655 6777777777776 3455566
Q ss_pred eeEecCccCCCccccccccccccccCcccccCCCCCCChhHHHHhhccCCCCCCeEEEEeeccCCCcchhhhhchhhHHH
Q 047321 536 KFVVGGGVDGSNTCRLESLKNLQLLRECGIEGLGNVSHLDEAERLQLYNQQNLLRLRLRFGRVVDGEDEERRRKNEKDKQ 615 (807)
Q Consensus 536 ~l~~~~~~~~~~~~~i~~L~~L~~L~~L~i~~l~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~ 615 (807)
.+.++.+. -..+..+..+.+|+.|.+.+ .+... ..+.++++|+.|++++|.+.....- ....
T Consensus 138 ~L~l~~n~----l~~~~~~~~l~~L~~L~l~~--~~~~~-----~~~~~l~~L~~L~l~~n~l~~~~~l-------~~l~ 199 (466)
T 1o6v_A 138 RLELSSNT----ISDISALSGLTSLQQLSFGN--QVTDL-----KPLANLTTLERLDISSNKVSDISVL-------AKLT 199 (466)
T ss_dssp EEEEEEEE----ECCCGGGTTCTTCSEEEEEE--SCCCC-----GGGTTCTTCCEEECCSSCCCCCGGG-------GGCT
T ss_pred EEECCCCc----cCCChhhccCCcccEeecCC--cccCc-----hhhccCCCCCEEECcCCcCCCChhh-------ccCC
Confidence 66665544 11223344455555544432 11111 1245556666666665543111000 0000
Q ss_pred HHHhhcCC---CCCCCCCCCcc-cceEeccCCcCceeeCcccC---CCCCCCCCCCCCCCCCCccccCcccccccccCCC
Q 047321 616 LLEALQPP---LSHLPPLGKLP-LKKLELRDLESVKRVGNEFL---GIEESSEDDPSSSSSSPSVIAFPKLKSLEIDGMK 688 (807)
Q Consensus 616 ~l~~l~p~---~~~lp~l~~L~-L~~L~L~~~~~l~~i~~~~~---~~~~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 688 (807)
.|+.+.-. ...+++++.++ |+.|+++++. ++.++ .+. ....|.+.++.....++ +..+++|+.|+++++
T Consensus 200 ~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~-l~~~~-~l~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n- 275 (466)
T 1o6v_A 200 NLESLIATNNQISDITPLGILTNLDELSLNGNQ-LKDIG-TLASLTNLTDLDLANNQISNLAP-LSGLTKLTELKLGAN- 275 (466)
T ss_dssp TCSEEECCSSCCCCCGGGGGCTTCCEEECCSSC-CCCCG-GGGGCTTCSEEECCSSCCCCCGG-GTTCTTCSEEECCSS-
T ss_pred CCCEEEecCCcccccccccccCCCCEEECCCCC-cccch-hhhcCCCCCEEECCCCccccchh-hhcCCCCCEEECCCC-
Confidence 00000000 02333355666 7777777643 44332 122 22233333333333332 556777777777764
Q ss_pred ccccchhhhccccCCCCCCcccEEEEccCCCCCCCcccccCCCCccEEeeccCcccccccccccccCCCCCCCCeeeecc
Q 047321 689 ELEEWNYRITRKENISIMPRLSSLQIMNCRKLKALPDYLLQTIALQKLSIYSCDLLEELPILEDRRTTDIPRLSSLAIWY 768 (807)
Q Consensus 689 ~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~lp~~l~~l~~L~~L~l~~c~~l~~lP~~~~~~~~~l~~L~~L~i~~ 768 (807)
.+..++. +..+++|+.|++++| ++..+|. +..+++|+.|++++| .+..++ .+..+++|+.|++++
T Consensus 276 ~l~~~~~-------~~~l~~L~~L~L~~n-~l~~~~~-~~~l~~L~~L~L~~n-~l~~~~-----~~~~l~~L~~L~l~~ 340 (466)
T 1o6v_A 276 QISNISP-------LAGLTALTNLELNEN-QLEDISP-ISNLKNLTYLTLYFN-NISDIS-----PVSSLTKLQRLFFYN 340 (466)
T ss_dssp CCCCCGG-------GTTCTTCSEEECCSS-CCSCCGG-GGGCTTCSEEECCSS-CCSCCG-----GGGGCTTCCEEECCS
T ss_pred ccCcccc-------ccCCCccCeEEcCCC-cccCchh-hcCCCCCCEEECcCC-cCCCch-----hhccCccCCEeECCC
Confidence 4444432 456788888888888 6777764 677888888888887 455554 256789999999998
Q ss_pred CCCcccCCccCCCCCcccccccccchhhhhhhhh
Q 047321 769 CPKLKVLPDYLLRTTTLQAGEQDYENEKFSQRIA 802 (807)
Q Consensus 769 c~~l~~lP~~l~~l~~L~~L~l~~~~~~~~~~~~ 802 (807)
| .+..+| .+.++++|+.|++++|++....|+.
T Consensus 341 n-~l~~~~-~l~~l~~L~~L~l~~n~l~~~~~~~ 372 (466)
T 1o6v_A 341 N-KVSDVS-SLANLTNINWLSAGHNQISDLTPLA 372 (466)
T ss_dssp S-CCCCCG-GGTTCTTCCEEECCSSCCCBCGGGT
T ss_pred C-ccCCch-hhccCCCCCEEeCCCCccCccchhh
Confidence 6 566665 6888999999999999887655543
No 16
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.73 E-value=4.4e-18 Score=198.58 Aligned_cols=297 Identities=11% Similarity=0.103 Sum_probs=174.9
Q ss_pred CcceEEEEEeeccCCC-CccccCCCCceeEEEeCCCCCCCCCCCCc--cccccccCc------ccceeeecc--------
Q 047321 466 GDKVRHLGLKFEEGAS-FPMSIHGLNRLRTLLIYDQSPYNPSLSSS--ILPELFNKL------ACLRALVIR-------- 528 (807)
Q Consensus 466 ~~~~r~L~l~~~~~~~-~~~~~~~l~~Lr~L~l~~~~~~~l~~~i~--~LP~~i~~L------~~L~~LdL~-------- 528 (807)
..++++|++++|.+.. +|..+.++++|++|++++|. .+. .+|..+++| ++|++|+++
T Consensus 248 l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~------~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~ip 321 (636)
T 4eco_A 248 LKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNR------GISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFP 321 (636)
T ss_dssp CTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCT------TSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCSSCC
T ss_pred cCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCC------CCccccchHHHHhhhccccCCCCCEEECCCCcCCccC
Confidence 4678889998887654 78888889999999998872 144 467666665 677777765
Q ss_pred -----ccCCccCeeEecCccCCCccccccccccccccCcccccCCCCCCChhHHHHhhccCCCC-CCeEEEEeeccCCCc
Q 047321 529 -----QSLRTLEKFVVGGGVDGSNTCRLESLKNLQLLRECGIEGLGNVSHLDEAERLQLYNQQN-LLRLRLRFGRVVDGE 602 (807)
Q Consensus 529 -----~~L~~L~~l~~~~~~~~~~~~~i~~L~~L~~L~~L~i~~l~~~~~~~~~~~~~l~~l~~-L~~L~L~~~~~~~~~ 602 (807)
.++.+|+.+.++.+.+. + .++.+..+.+|+.|.+.+. .+. ..+..+.++++ |+.|++++|.+...+
T Consensus 322 ~~~~l~~l~~L~~L~L~~N~l~--g-~ip~~~~l~~L~~L~L~~N----~l~-~lp~~l~~l~~~L~~L~Ls~N~l~~lp 393 (636)
T 4eco_A 322 VETSLQKMKKLGMLECLYNQLE--G-KLPAFGSEIKLASLNLAYN----QIT-EIPANFCGFTEQVENLSFAHNKLKYIP 393 (636)
T ss_dssp CHHHHTTCTTCCEEECCSCCCE--E-ECCCCEEEEEESEEECCSS----EEE-ECCTTSEEECTTCCEEECCSSCCSSCC
T ss_pred chhhhccCCCCCEEeCcCCcCc--c-chhhhCCCCCCCEEECCCC----ccc-cccHhhhhhcccCcEEEccCCcCcccc
Confidence 23445556666555421 0 1224455555555554431 111 11123555555 666666666542111
Q ss_pred chhhhhchhhHHHHHHhhcCCC----CCCCC-CC-------Ccc-cceEeccCCcCceeeCccc----CCCCCCCCCCCC
Q 047321 603 DEERRRKNEKDKQLLEALQPPL----SHLPP-LG-------KLP-LKKLELRDLESVKRVGNEF----LGIEESSEDDPS 665 (807)
Q Consensus 603 ~~~~~~~~~~~~~~l~~l~p~~----~~lp~-l~-------~L~-L~~L~L~~~~~l~~i~~~~----~~~~~l~~~~~~ 665 (807)
..- .... ...|+.+.-.. ...|. ++ .++ |++|+|+++. ++.++..+ .....|.+.++.
T Consensus 394 ~~~---~~~~-l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~-l~~lp~~~~~~l~~L~~L~Ls~N~ 468 (636)
T 4eco_A 394 NIF---DAKS-VSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQ-ISKFPKELFSTGSPLSSINLMGNM 468 (636)
T ss_dssp SCC---CTTC-SSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSC-CCSCCTHHHHTTCCCSEEECCSSC
T ss_pred hhh---hhcc-cCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCc-cCcCCHHHHccCCCCCEEECCCCC
Confidence 100 0000 00000000000 11121 33 566 8888887744 55665432 233344444444
Q ss_pred CCCCCCcccc--------CcccccccccCCCccccchhhhccccCCC--CCCcccEEEEccCCCCCCCcccccCCCCccE
Q 047321 666 SSSSSPSVIA--------FPKLKSLEIDGMKELEEWNYRITRKENIS--IMPRLSSLQIMNCRKLKALPDYLLQTIALQK 735 (807)
Q Consensus 666 ~~~~~~~~~~--------l~~L~~L~l~~~~~l~~~~~~~~~~~~~~--~l~~L~~L~l~~c~~L~~lp~~l~~l~~L~~ 735 (807)
....|..... +++|+.|+++++ .+..++. .+. .+++|+.|++++| .+..+|..+..+++|+.
T Consensus 469 l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N-~l~~lp~------~~~~~~l~~L~~L~Ls~N-~l~~ip~~~~~l~~L~~ 540 (636)
T 4eco_A 469 LTEIPKNSLKDENENFKNTYLLTSIDLRFN-KLTKLSD------DFRATTLPYLVGIDLSYN-SFSKFPTQPLNSSTLKG 540 (636)
T ss_dssp CSBCCSSSSEETTEECTTGGGCCEEECCSS-CCCBCCG------GGSTTTCTTCCEEECCSS-CCSSCCCGGGGCSSCCE
T ss_pred CCCcCHHHhccccccccccCCccEEECcCC-cCCccCh------hhhhccCCCcCEEECCCC-CCCCcChhhhcCCCCCE
Confidence 4444443222 227888888875 5655554 333 7888888888888 66678888888888888
Q ss_pred Eeecc------CcccccccccccccCCCCCCCCeeeeccCCCcccCCccCCCCCcccccccccchhh
Q 047321 736 LSIYS------CDLLEELPILEDRRTTDIPRLSSLAIWYCPKLKVLPDYLLRTTTLQAGEQDYENEK 796 (807)
Q Consensus 736 L~l~~------c~~l~~lP~~~~~~~~~l~~L~~L~i~~c~~l~~lP~~l~~l~~L~~L~l~~~~~~ 796 (807)
|++++ +...+.+| ..+..+++|+.|++++|. ++.+|..+. ++|+.|++++|++.
T Consensus 541 L~Ls~N~~ls~N~l~~~~p----~~l~~l~~L~~L~Ls~N~-l~~ip~~~~--~~L~~L~Ls~N~l~ 600 (636)
T 4eco_A 541 FGIRNQRDAQGNRTLREWP----EGITLCPSLTQLQIGSND-IRKVNEKIT--PNISVLDIKDNPNI 600 (636)
T ss_dssp EECCSCBCTTCCBCCCCCC----TTGGGCSSCCEEECCSSC-CCBCCSCCC--TTCCEEECCSCTTC
T ss_pred EECCCCcccccCcccccCh----HHHhcCCCCCEEECCCCc-CCccCHhHh--CcCCEEECcCCCCc
Confidence 88854 44456677 677788888999988865 488887765 78889999888764
No 17
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.73 E-value=8.3e-18 Score=195.91 Aligned_cols=286 Identities=17% Similarity=0.202 Sum_probs=189.0
Q ss_pred ceEEEEEeeccCCCCcc-ccCCCCceeEEEeCCCCCCCCCCCCccccccccCcccceeeecc------------ccCCcc
Q 047321 468 KVRHLGLKFEEGASFPM-SIHGLNRLRTLLIYDQSPYNPSLSSSILPELFNKLACLRALVIR------------QSLRTL 534 (807)
Q Consensus 468 ~~r~L~l~~~~~~~~~~-~~~~l~~Lr~L~l~~~~~~~l~~~i~~LP~~i~~L~~L~~LdL~------------~~L~~L 534 (807)
.++++++++|.+..++. .|..+++|++|++++| .+..+|..++++++|++|+++ .++.+|
T Consensus 255 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-------~l~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L 327 (606)
T 3t6q_A 255 SVESINLQKHYFFNISSNTFHCFSGLQELDLTAT-------HLSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSL 327 (606)
T ss_dssp EEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTS-------CCSCCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTC
T ss_pred ceeEEEeecCccCccCHHHhccccCCCEEeccCC-------ccCCCChhhcccccCCEEECccCCcCcCchhhhhccCcC
Confidence 68888888888876554 4788899999999888 778888888889999999887 456667
Q ss_pred CeeEecCccCCCccccccccccccccCcccccCCCCCCChhHHHHhhccCCCCCCeEEEEeeccCCCcchhhhhchhhHH
Q 047321 535 EKFVVGGGVDGSNTCRLESLKNLQLLRECGIEGLGNVSHLDEAERLQLYNQQNLLRLRLRFGRVVDGEDEERRRKNEKDK 614 (807)
Q Consensus 535 ~~l~~~~~~~~~~~~~i~~L~~L~~L~~L~i~~l~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~ 614 (807)
+.+.+.++.... ......+..+.+|+.|.+.+.. +.... .....+.++++|+.|++++|.+.
T Consensus 328 ~~L~l~~n~~~~-~~~~~~~~~l~~L~~L~l~~n~-l~~~~-~~~~~~~~l~~L~~L~l~~n~l~--------------- 389 (606)
T 3t6q_A 328 THLSIKGNTKRL-ELGTGCLENLENLRELDLSHDD-IETSD-CCNLQLRNLSHLQSLNLSYNEPL--------------- 389 (606)
T ss_dssp SEEECCSCSSCC-BCCSSTTTTCTTCCEEECCSSC-CCEEE-ESTTTTTTCTTCCEEECCSCSCE---------------
T ss_pred CEEECCCCCccc-ccchhhhhccCcCCEEECCCCc-ccccc-CcchhcccCCCCCEEECCCCcCC---------------
Confidence 777776654210 0111225566667766665421 11100 00124677788888888877631
Q ss_pred HHHHhhcCCCCCCC-CCCCcc-cceEeccCCcCceee-Ccc-cCCCCCC---CCCCCCCCCC-CCccccCcccccccccC
Q 047321 615 QLLEALQPPLSHLP-PLGKLP-LKKLELRDLESVKRV-GNE-FLGIEES---SEDDPSSSSS-SPSVIAFPKLKSLEIDG 686 (807)
Q Consensus 615 ~~l~~l~p~~~~lp-~l~~L~-L~~L~L~~~~~l~~i-~~~-~~~~~~l---~~~~~~~~~~-~~~~~~l~~L~~L~l~~ 686 (807)
...| .++.++ |++|+++++. +... +.. +.....| .+.++..... +..+..+++|+.|++++
T Consensus 390 ----------~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~ 458 (606)
T 3t6q_A 390 ----------SLKTEAFKECPQLELLDLAFTR-LKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQG 458 (606)
T ss_dssp ----------EECTTTTTTCTTCSEEECTTCC-EECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTT
T ss_pred ----------cCCHHHhcCCccCCeEECCCCc-CCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCC
Confidence 1112 256677 8888887654 3322 222 2233333 3333333322 33456789999999988
Q ss_pred CCcccc--chhhhccccCCCCCCcccEEEEccCCCCCCC-cccccCCCCccEEeeccCcccccccccccccCCCCCCCCe
Q 047321 687 MKELEE--WNYRITRKENISIMPRLSSLQIMNCRKLKAL-PDYLLQTIALQKLSIYSCDLLEELPILEDRRTTDIPRLSS 763 (807)
Q Consensus 687 ~~~l~~--~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~l-p~~l~~l~~L~~L~l~~c~~l~~lP~~~~~~~~~l~~L~~ 763 (807)
+. +.. ++. ...+..+++|+.|++++| .+..+ |..+..+++|++|++++|.-....| ..+..+++| .
T Consensus 459 n~-l~~~~~~~----~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~----~~l~~l~~L-~ 527 (606)
T 3t6q_A 459 NH-FPKGNIQK----TNSLQTLGRLEILVLSFC-DLSSIDQHAFTSLKMMNHVDLSHNRLTSSSI----EALSHLKGI-Y 527 (606)
T ss_dssp CB-CGGGEECS----SCGGGGCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEECCSSCCCGGGG----GGGTTCCSC-E
T ss_pred CC-CCcccccc----chhhccCCCccEEECCCC-ccCccChhhhccccCCCEEECCCCccCcCCh----hHhCccccc-E
Confidence 63 332 121 234567899999999999 55555 6778899999999999975444555 677888999 9
Q ss_pred eeeccCCCcccCCccCCCCCcccccccccchhhhhhh
Q 047321 764 LAIWYCPKLKVLPDYLLRTTTLQAGEQDYENEKFSQR 800 (807)
Q Consensus 764 L~i~~c~~l~~lP~~l~~l~~L~~L~l~~~~~~~~~~ 800 (807)
|++++|......|..+..+++|+.|++++|++...-+
T Consensus 528 L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~ 564 (606)
T 3t6q_A 528 LNLASNHISIILPSLLPILSQQRTINLRQNPLDCTCS 564 (606)
T ss_dssp EECCSSCCCCCCGGGHHHHHTSSEEECTTCCEECSGG
T ss_pred EECcCCcccccCHhhcccCCCCCEEeCCCCCccccCC
Confidence 9999876554455677888999999999998876544
No 18
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.73 E-value=7e-17 Score=181.51 Aligned_cols=284 Identities=19% Similarity=0.229 Sum_probs=180.1
Q ss_pred CcceEEEEEeeccCCCCccccCCCCceeEEEeCCCCCCCCCCCCccccccccCcccceeeecc----------ccCCccC
Q 047321 466 GDKVRHLGLKFEEGASFPMSIHGLNRLRTLLIYDQSPYNPSLSSSILPELFNKLACLRALVIR----------QSLRTLE 535 (807)
Q Consensus 466 ~~~~r~L~l~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~l~~~i~~LP~~i~~L~~L~~LdL~----------~~L~~L~ 535 (807)
..++++|++++|.+...+. +.++++|++|++++| .+..+|. ++++++|++|+++ .++.+|+
T Consensus 89 l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~L~~n-------~l~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~ 159 (466)
T 1o6v_A 89 LTKLVDILMNNNQIADITP-LANLTNLTGLTLFNN-------QITDIDP-LKNLTNLNRLELSSNTISDISALSGLTSLQ 159 (466)
T ss_dssp CTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSS-------CCCCCGG-GTTCTTCSEEEEEEEEECCCGGGTTCTTCS
T ss_pred cccCCEEECCCCccccChh-hcCCCCCCEEECCCC-------CCCCChH-HcCCCCCCEEECCCCccCCChhhccCCccc
Confidence 4678888888888776665 788888888888887 6666765 7777888888776 3445555
Q ss_pred eeEecCccCCCccccccccccccccCcccccCCCCCCChhHHHHhhccCCCCCCeEEEEeeccCCCcchhhhhchhhHHH
Q 047321 536 KFVVGGGVDGSNTCRLESLKNLQLLRECGIEGLGNVSHLDEAERLQLYNQQNLLRLRLRFGRVVDGEDEERRRKNEKDKQ 615 (807)
Q Consensus 536 ~l~~~~~~~~~~~~~i~~L~~L~~L~~L~i~~l~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~ 615 (807)
.+.+++.. ..+..+.++.+|+.|.+.+.. +... ..+.++++|+.|++++|.+...... ....
T Consensus 160 ~L~l~~~~-----~~~~~~~~l~~L~~L~l~~n~-l~~~-----~~l~~l~~L~~L~l~~n~l~~~~~~-------~~l~ 221 (466)
T 1o6v_A 160 QLSFGNQV-----TDLKPLANLTTLERLDISSNK-VSDI-----SVLAKLTNLESLIATNNQISDITPL-------GILT 221 (466)
T ss_dssp EEEEEESC-----CCCGGGTTCTTCCEEECCSSC-CCCC-----GGGGGCTTCSEEECCSSCCCCCGGG-------GGCT
T ss_pred EeecCCcc-----cCchhhccCCCCCEEECcCCc-CCCC-----hhhccCCCCCEEEecCCcccccccc-------cccC
Confidence 55554221 122234455555555554321 1111 1244555556665555543211000 0000
Q ss_pred HHHhhcCC---CCCCCCCCCcc-cceEeccCCcCceeeCcccCCCCCC---CCCCCCCCCCCCccccCcccccccccCCC
Q 047321 616 LLEALQPP---LSHLPPLGKLP-LKKLELRDLESVKRVGNEFLGIEES---SEDDPSSSSSSPSVIAFPKLKSLEIDGMK 688 (807)
Q Consensus 616 ~l~~l~p~---~~~lp~l~~L~-L~~L~L~~~~~l~~i~~~~~~~~~l---~~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 688 (807)
.|+.+.-. ...++.++.++ |+.|+++++. +..++. +.....| .+.++.....++ +..+++|+.|+++++
T Consensus 222 ~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~-l~~~~~-~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~L~~n- 297 (466)
T 1o6v_A 222 NLDELSLNGNQLKDIGTLASLTNLTDLDLANNQ-ISNLAP-LSGLTKLTELKLGANQISNISP-LAGLTALTNLELNEN- 297 (466)
T ss_dssp TCCEEECCSSCCCCCGGGGGCTTCSEEECCSSC-CCCCGG-GTTCTTCSEEECCSSCCCCCGG-GTTCTTCSEEECCSS-
T ss_pred CCCEEECCCCCcccchhhhcCCCCCEEECCCCc-cccchh-hhcCCCCCEEECCCCccCcccc-ccCCCccCeEEcCCC-
Confidence 00000000 03445567788 9999998765 444332 3333333 334444444443 678999999999986
Q ss_pred ccccchhhhccccCCCCCCcccEEEEccCCCCCCCcccccCCCCccEEeeccCcccccccccccccCCCCCCCCeeeecc
Q 047321 689 ELEEWNYRITRKENISIMPRLSSLQIMNCRKLKALPDYLLQTIALQKLSIYSCDLLEELPILEDRRTTDIPRLSSLAIWY 768 (807)
Q Consensus 689 ~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~lp~~l~~l~~L~~L~l~~c~~l~~lP~~~~~~~~~l~~L~~L~i~~ 768 (807)
.+..++. +..+++|+.|++++| .+..++. +..+++|+.|++++| .+..+| .+..+++|+.|++++
T Consensus 298 ~l~~~~~-------~~~l~~L~~L~L~~n-~l~~~~~-~~~l~~L~~L~l~~n-~l~~~~-----~l~~l~~L~~L~l~~ 362 (466)
T 1o6v_A 298 QLEDISP-------ISNLKNLTYLTLYFN-NISDISP-VSSLTKLQRLFFYNN-KVSDVS-----SLANLTNINWLSAGH 362 (466)
T ss_dssp CCSCCGG-------GGGCTTCSEEECCSS-CCSCCGG-GGGCTTCCEEECCSS-CCCCCG-----GGTTCTTCCEEECCS
T ss_pred cccCchh-------hcCCCCCCEEECcCC-cCCCchh-hccCccCCEeECCCC-ccCCch-----hhccCCCCCEEeCCC
Confidence 5655543 457899999999999 6777765 778999999999997 566765 567899999999998
Q ss_pred CCCcccCCccCCCCCcccccccccchhhh
Q 047321 769 CPKLKVLPDYLLRTTTLQAGEQDYENEKF 797 (807)
Q Consensus 769 c~~l~~lP~~l~~l~~L~~L~l~~~~~~~ 797 (807)
|......| +.+++.|+.|++++|++..
T Consensus 363 n~l~~~~~--~~~l~~L~~L~l~~n~~~~ 389 (466)
T 1o6v_A 363 NQISDLTP--LANLTRITQLGLNDQAWTN 389 (466)
T ss_dssp SCCCBCGG--GTTCTTCCEEECCCEEEEC
T ss_pred CccCccch--hhcCCCCCEEeccCCcccC
Confidence 76544444 8899999999999998764
No 19
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.72 E-value=1.8e-17 Score=197.12 Aligned_cols=296 Identities=14% Similarity=0.104 Sum_probs=182.0
Q ss_pred CcceEEEEEeeccCC-CCccccCCCCceeEEEeCCCCCCCCCCCCc--cccccccCcc-------cceeeecc-------
Q 047321 466 GDKVRHLGLKFEEGA-SFPMSIHGLNRLRTLLIYDQSPYNPSLSSS--ILPELFNKLA-------CLRALVIR------- 528 (807)
Q Consensus 466 ~~~~r~L~l~~~~~~-~~~~~~~~l~~Lr~L~l~~~~~~~l~~~i~--~LP~~i~~L~-------~L~~LdL~------- 528 (807)
..++++|++++|.+. .+|..+.++++|++|++++|. .+. .+|..+++|. +|++|+|+
T Consensus 490 L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~------~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~i 563 (876)
T 4ecn_A 490 LKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNR------GISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEF 563 (876)
T ss_dssp CTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCT------TSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCBC
T ss_pred CCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCC------CcccccchHHHHhhhhcccccCCccEEEeeCCcCCcc
Confidence 577999999998754 488899999999999999973 144 3666666555 67777665
Q ss_pred ------ccCCccCeeEecCccCCCccccccccccccccCcccccCCCCCCChhHHHHhhccCCCC-CCeEEEEeeccCCC
Q 047321 529 ------QSLRTLEKFVVGGGVDGSNTCRLESLKNLQLLRECGIEGLGNVSHLDEAERLQLYNQQN-LLRLRLRFGRVVDG 601 (807)
Q Consensus 529 ------~~L~~L~~l~~~~~~~~~~~~~i~~L~~L~~L~~L~i~~l~~~~~~~~~~~~~l~~l~~-L~~L~L~~~~~~~~ 601 (807)
.++.+|+.+.++.+.+. .++.+..+.+|+.|.+.+..- .. .+..+.++++ |+.|+|+.|.+...
T Consensus 564 p~~~~l~~L~~L~~L~Ls~N~l~----~lp~~~~L~~L~~L~Ls~N~l-~~----lp~~l~~l~~~L~~L~Ls~N~L~~l 634 (876)
T 4ecn_A 564 PASASLQKMVKLGLLDCVHNKVR----HLEAFGTNVKLTDLKLDYNQI-EE----IPEDFCAFTDQVEGLGFSHNKLKYI 634 (876)
T ss_dssp CCHHHHTTCTTCCEEECTTSCCC----BCCCCCTTSEESEEECCSSCC-SC----CCTTSCEECTTCCEEECCSSCCCSC
T ss_pred CChhhhhcCCCCCEEECCCCCcc----cchhhcCCCcceEEECcCCcc-cc----chHHHhhccccCCEEECcCCCCCcC
Confidence 23445555666655422 223555555566655543211 11 1123555666 66676666654221
Q ss_pred cchhhhhchhhHHHHHHhhcCCC----CCCCC----CC--Ccc-cceEeccCCcCceeeCcccC----CCCCCCCCCCCC
Q 047321 602 EDEERRRKNEKDKQLLEALQPPL----SHLPP----LG--KLP-LKKLELRDLESVKRVGNEFL----GIEESSEDDPSS 666 (807)
Q Consensus 602 ~~~~~~~~~~~~~~~l~~l~p~~----~~lp~----l~--~L~-L~~L~L~~~~~l~~i~~~~~----~~~~l~~~~~~~ 666 (807)
+..-.... ...|+.|.-.. ..+|. ++ .++ |+.|+|+++. +..++..+. .+..|.+.++..
T Consensus 635 p~~~~~~~----~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~-L~~lp~~~~~~l~~L~~L~Ls~N~L 709 (876)
T 4ecn_A 635 PNIFNAKS----VYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNE-IQKFPTELFATGSPISTIILSNNLM 709 (876)
T ss_dssp CSCCCTTC----SSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSC-CCSCCHHHHHTTCCCSEEECCSCCC
T ss_pred chhhhccc----cCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCc-CCccCHHHHccCCCCCEEECCCCcC
Confidence 11000000 00000000000 11122 22 345 7788887644 555554332 333444444444
Q ss_pred CCCCCccc--------cCcccccccccCCCccccchhhhccccCCC--CCCcccEEEEccCCCCCCCcccccCCCCccEE
Q 047321 667 SSSSPSVI--------AFPKLKSLEIDGMKELEEWNYRITRKENIS--IMPRLSSLQIMNCRKLKALPDYLLQTIALQKL 736 (807)
Q Consensus 667 ~~~~~~~~--------~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~--~l~~L~~L~l~~c~~L~~lp~~l~~l~~L~~L 736 (807)
..+|.... ++++|+.|+|+++ .+..++. .+. .+++|+.|++++| .+..+|..+..+++|+.|
T Consensus 710 ~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N-~L~~lp~------~l~~~~l~~L~~L~Ls~N-~L~~lp~~l~~L~~L~~L 781 (876)
T 4ecn_A 710 TSIPENSLKPKDGNYKNTYLLTTIDLRFN-KLTSLSD------DFRATTLPYLSNMDVSYN-CFSSFPTQPLNSSQLKAF 781 (876)
T ss_dssp SCCCTTSSSCTTSCCTTGGGCCEEECCSS-CCCCCCG------GGSTTTCTTCCEEECCSS-CCSSCCCGGGGCTTCCEE
T ss_pred CccChHHhccccccccccCCccEEECCCC-CCccchH------HhhhccCCCcCEEEeCCC-CCCccchhhhcCCCCCEE
Confidence 44444332 3348999999886 6666654 343 7899999999988 677799888899999999
Q ss_pred eecc------CcccccccccccccCCCCCCCCeeeeccCCCcccCCccCCCCCcccccccccchhh
Q 047321 737 SIYS------CDLLEELPILEDRRTTDIPRLSSLAIWYCPKLKVLPDYLLRTTTLQAGEQDYENEK 796 (807)
Q Consensus 737 ~l~~------c~~l~~lP~~~~~~~~~l~~L~~L~i~~c~~l~~lP~~l~~l~~L~~L~l~~~~~~ 796 (807)
+|++ |.....+| ..+..+++|+.|++++|. ++.+|..+. ++|+.|++++|++.
T Consensus 782 ~Ls~N~~ls~N~l~~~ip----~~l~~L~~L~~L~Ls~N~-L~~Ip~~l~--~~L~~LdLs~N~l~ 840 (876)
T 4ecn_A 782 GIRHQRDAEGNRILRQWP----TGITTCPSLIQLQIGSND-IRKVDEKLT--PQLYILDIADNPNI 840 (876)
T ss_dssp ECCCCBCTTCCBCCCCCC----TTGGGCSSCCEEECCSSC-CCBCCSCCC--SSSCEEECCSCTTC
T ss_pred ECCCCCCcccccccccCh----HHHhcCCCCCEEECCCCC-CCccCHhhc--CCCCEEECCCCCCC
Confidence 9976 44456677 777889999999999865 488998765 68999999999873
No 20
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.71 E-value=7.3e-17 Score=187.11 Aligned_cols=148 Identities=20% Similarity=0.207 Sum_probs=110.3
Q ss_pred cceEeccCCcCceeeCccc-CCCCCCCCCCCCCCCCCCccccCcccccccccCCCccccchhhhccccCCCCCCcccEEE
Q 047321 635 LKKLELRDLESVKRVGNEF-LGIEESSEDDPSSSSSSPSVIAFPKLKSLEIDGMKELEEWNYRITRKENISIMPRLSSLQ 713 (807)
Q Consensus 635 L~~L~L~~~~~l~~i~~~~-~~~~~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~l~~L~~L~ 713 (807)
|+.|+++++. +..++... ..+..|.+.++.... ++.+..+++|+.|+|+++ .+...+. ..+..+++|+.|+
T Consensus 213 L~~L~ls~n~-l~~~~~~~~~~L~~L~L~~n~l~~-~~~l~~l~~L~~L~Ls~N-~l~~~~~-----~~~~~l~~L~~L~ 284 (597)
T 3oja_B 213 VEELDASHNS-INVVRGPVNVELTILKLQHNNLTD-TAWLLNYPGLVEVDLSYN-ELEKIMY-----HPFVKMQRLERLY 284 (597)
T ss_dssp CSEEECCSSC-CCEEECSCCSCCCEEECCSSCCCC-CGGGGGCTTCSEEECCSS-CCCEEES-----GGGTTCSSCCEEE
T ss_pred hheeeccCCc-ccccccccCCCCCEEECCCCCCCC-ChhhccCCCCCEEECCCC-ccCCCCH-----HHhcCccCCCEEE
Confidence 7777777644 44443322 233333444443333 355778999999999986 4555432 3567899999999
Q ss_pred EccCCCCCCCcccccCCCCccEEeeccCcccccccccccccCCCCCCCCeeeeccCCCcccCCccCCCCCcccccccccc
Q 047321 714 IMNCRKLKALPDYLLQTIALQKLSIYSCDLLEELPILEDRRTTDIPRLSSLAIWYCPKLKVLPDYLLRTTTLQAGEQDYE 793 (807)
Q Consensus 714 l~~c~~L~~lp~~l~~l~~L~~L~l~~c~~l~~lP~~~~~~~~~l~~L~~L~i~~c~~l~~lP~~l~~l~~L~~L~l~~~ 793 (807)
+++| .+..+|..+..+++|+.|+|++| .+..+| ..+..+++|+.|++++|+ +..+| +..+++|+.|++++|
T Consensus 285 Ls~N-~l~~l~~~~~~l~~L~~L~Ls~N-~l~~i~----~~~~~l~~L~~L~L~~N~-l~~~~--~~~~~~L~~L~l~~N 355 (597)
T 3oja_B 285 ISNN-RLVALNLYGQPIPTLKVLDLSHN-HLLHVE----RNQPQFDRLENLYLDHNS-IVTLK--LSTHHTLKNLTLSHN 355 (597)
T ss_dssp CTTS-CCCEEECSSSCCTTCCEEECCSS-CCCCCG----GGHHHHTTCSEEECCSSC-CCCCC--CCTTCCCSEEECCSS
T ss_pred CCCC-CCCCCCcccccCCCCcEEECCCC-CCCccC----cccccCCCCCEEECCCCC-CCCcC--hhhcCCCCEEEeeCC
Confidence 9998 78889988888999999999997 577888 667789999999999865 66676 678899999999999
Q ss_pred hhhhhh
Q 047321 794 NEKFSQ 799 (807)
Q Consensus 794 ~~~~~~ 799 (807)
++....
T Consensus 356 ~~~~~~ 361 (597)
T 3oja_B 356 DWDCNS 361 (597)
T ss_dssp CEEHHH
T ss_pred CCCChh
Confidence 987653
No 21
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.71 E-value=1.5e-16 Score=177.47 Aligned_cols=265 Identities=13% Similarity=0.100 Sum_probs=134.6
Q ss_pred CcceEEEEEeeccCCCCccccCCCCceeEEEeCCCCCCCCCCCCccccccccCcccceeeecc---------ccCCccCe
Q 047321 466 GDKVRHLGLKFEEGASFPMSIHGLNRLRTLLIYDQSPYNPSLSSSILPELFNKLACLRALVIR---------QSLRTLEK 536 (807)
Q Consensus 466 ~~~~r~L~l~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~l~~~i~~LP~~i~~L~~L~~LdL~---------~~L~~L~~ 536 (807)
...+++|++++|.+..+| +..+++|++|++++| .+..+| ++++++|++|+++ .++.+|+.
T Consensus 63 l~~L~~L~Ls~n~l~~~~--~~~l~~L~~L~Ls~N-------~l~~~~--~~~l~~L~~L~L~~N~l~~l~~~~l~~L~~ 131 (457)
T 3bz5_A 63 LTGLTKLICTSNNITTLD--LSQNTNLTYLACDSN-------KLTNLD--VTPLTKLTYLNCDTNKLTKLDVSQNPLLTY 131 (457)
T ss_dssp CTTCSEEECCSSCCSCCC--CTTCTTCSEEECCSS-------CCSCCC--CTTCTTCCEEECCSSCCSCCCCTTCTTCCE
T ss_pred cCCCCEEEccCCcCCeEc--cccCCCCCEEECcCC-------CCceee--cCCCCcCCEEECCCCcCCeecCCCCCcCCE
Confidence 355666666666666553 566666777777666 555554 6667777777766 34455566
Q ss_pred eEecCccCCCccccccccccccccCcccccCCCCCCChhHHHHhhccCCCCCCeEEEEeeccCCCcchhhhhchhhHHHH
Q 047321 537 FVVGGGVDGSNTCRLESLKNLQLLRECGIEGLGNVSHLDEAERLQLYNQQNLLRLRLRFGRVVDGEDEERRRKNEKDKQL 616 (807)
Q Consensus 537 l~~~~~~~~~~~~~i~~L~~L~~L~~L~i~~l~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~ 616 (807)
+.++.+.+.. + .+..+.+|+.|.+.+...+... .+..+++|+.|++++|.+
T Consensus 132 L~l~~N~l~~----l-~l~~l~~L~~L~l~~n~~~~~~------~~~~l~~L~~L~ls~n~l------------------ 182 (457)
T 3bz5_A 132 LNCARNTLTE----I-DVSHNTQLTELDCHLNKKITKL------DVTPQTQLTTLDCSFNKI------------------ 182 (457)
T ss_dssp EECTTSCCSC----C-CCTTCTTCCEEECTTCSCCCCC------CCTTCTTCCEEECCSSCC------------------
T ss_pred EECCCCccce----e-ccccCCcCCEEECCCCCccccc------ccccCCcCCEEECCCCcc------------------
Confidence 6665554211 1 2445555555555543222221 255666777777776664
Q ss_pred HHhhcCCCCCCCCCCCcc-cceEeccCCcCceeeCc-ccCCCCCCCCCCCCCCCCCCccccCcccccccccCCCccccch
Q 047321 617 LEALQPPLSHLPPLGKLP-LKKLELRDLESVKRVGN-EFLGIEESSEDDPSSSSSSPSVIAFPKLKSLEIDGMKELEEWN 694 (807)
Q Consensus 617 l~~l~p~~~~lp~l~~L~-L~~L~L~~~~~l~~i~~-~~~~~~~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~ 694 (807)
..+| ++.++ |+.|+++++. ++.++. .......|.+.++.....| +..+++|+.|+++++ .+...+
T Consensus 183 --------~~l~-l~~l~~L~~L~l~~N~-l~~~~l~~l~~L~~L~Ls~N~l~~ip--~~~l~~L~~L~l~~N-~l~~~~ 249 (457)
T 3bz5_A 183 --------TELD-VSQNKLLNRLNCDTNN-ITKLDLNQNIQLTFLDCSSNKLTEID--VTPLTQLTYFDCSVN-PLTELD 249 (457)
T ss_dssp --------CCCC-CTTCTTCCEEECCSSC-CSCCCCTTCTTCSEEECCSSCCSCCC--CTTCTTCSEEECCSS-CCSCCC
T ss_pred --------ceec-cccCCCCCEEECcCCc-CCeeccccCCCCCEEECcCCcccccC--ccccCCCCEEEeeCC-cCCCcC
Confidence 2333 45555 6666665533 333310 0111222222333333332 445666666666653 343332
Q ss_pred hhhccccCCCCCC----------cccEEEEccCCCCCCCcccccCCCCccEEeeccCcccccccc----cccccCCCCCC
Q 047321 695 YRITRKENISIMP----------RLSSLQIMNCRKLKALPDYLLQTIALQKLSIYSCDLLEELPI----LEDRRTTDIPR 760 (807)
Q Consensus 695 ~~~~~~~~~~~l~----------~L~~L~l~~c~~L~~lp~~l~~l~~L~~L~l~~c~~l~~lP~----~~~~~~~~l~~ 760 (807)
. ..++ +|+.|++++|+.+..+| ...+++|+.|++++|+.++.+|. +..-.+..+++
T Consensus 250 ~--------~~l~~L~~L~l~~n~L~~L~l~~n~~~~~~~--~~~l~~L~~L~Ls~n~~l~~l~~~~~~L~~L~l~~~~~ 319 (457)
T 3bz5_A 250 V--------STLSKLTTLHCIQTDLLEIDLTHNTQLIYFQ--AEGCRKIKELDVTHNTQLYLLDCQAAGITELDLSQNPK 319 (457)
T ss_dssp C--------TTCTTCCEEECTTCCCSCCCCTTCTTCCEEE--CTTCTTCCCCCCTTCTTCCEEECTTCCCSCCCCTTCTT
T ss_pred H--------HHCCCCCEEeccCCCCCEEECCCCccCCccc--ccccccCCEEECCCCcccceeccCCCcceEechhhccc
Confidence 2 1223 33344444444444444 23556666666666665555551 00112334455
Q ss_pred CCeeeeccCCCcccCCccCCCCCcccccccccchhh
Q 047321 761 LSSLAIWYCPKLKVLPDYLLRTTTLQAGEQDYENEK 796 (807)
Q Consensus 761 L~~L~i~~c~~l~~lP~~l~~l~~L~~L~l~~~~~~ 796 (807)
|+.|++++| +++.+| +.+++.|+.|++++|++.
T Consensus 320 L~~L~L~~N-~l~~l~--l~~l~~L~~L~l~~N~l~ 352 (457)
T 3bz5_A 320 LVYLYLNNT-ELTELD--VSHNTKLKSLSCVNAHIQ 352 (457)
T ss_dssp CCEEECTTC-CCSCCC--CTTCTTCSEEECCSSCCC
T ss_pred CCEEECCCC-cccccc--cccCCcCcEEECCCCCCC
Confidence 555555542 344443 556666666666666554
No 22
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.70 E-value=1.5e-17 Score=176.32 Aligned_cols=248 Identities=15% Similarity=0.124 Sum_probs=183.0
Q ss_pred cceEEEEEeeccCCC---CccccCCCCceeEEEeCC-CCCCCCCCCCccccccccCcccceeeecccc-CCccCeeEecC
Q 047321 467 DKVRHLGLKFEEGAS---FPMSIHGLNRLRTLLIYD-QSPYNPSLSSSILPELFNKLACLRALVIRQS-LRTLEKFVVGG 541 (807)
Q Consensus 467 ~~~r~L~l~~~~~~~---~~~~~~~l~~Lr~L~l~~-~~~~~l~~~i~~LP~~i~~L~~L~~LdL~~~-L~~L~~l~~~~ 541 (807)
.++++|+++++.+.. +|..+.++++|++|++++ +. ....+|..++++++|++|+|+.+ +.
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~------l~~~~p~~l~~l~~L~~L~Ls~n~l~--------- 114 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINN------LVGPIPPAIAKLTQLHYLYITHTNVS--------- 114 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETT------EESCCCGGGGGCTTCSEEEEEEECCE---------
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCc------ccccCChhHhcCCCCCEEECcCCeeC---------
Confidence 679999999999874 789999999999999995 52 34478999999999999999832 11
Q ss_pred ccCCCccccccccccccccCcccccCCCCCCChhHHHHhhccCCCCCCeEEEEeeccCCCcchhhhhchhhHHHHHHhhc
Q 047321 542 GVDGSNTCRLESLKNLQLLRECGIEGLGNVSHLDEAERLQLYNQQNLLRLRLRFGRVVDGEDEERRRKNEKDKQLLEALQ 621 (807)
Q Consensus 542 ~~~~~~~~~i~~L~~L~~L~~L~i~~l~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~l~ 621 (807)
+..+..+.++.+|+.|.+.+- .+....+..+.++++|+.|+++.|.+.
T Consensus 115 ------~~~p~~~~~l~~L~~L~Ls~N----~l~~~~p~~~~~l~~L~~L~L~~N~l~---------------------- 162 (313)
T 1ogq_A 115 ------GAIPDFLSQIKTLVTLDFSYN----ALSGTLPPSISSLPNLVGITFDGNRIS---------------------- 162 (313)
T ss_dssp ------EECCGGGGGCTTCCEEECCSS----EEESCCCGGGGGCTTCCEEECCSSCCE----------------------
T ss_pred ------CcCCHHHhCCCCCCEEeCCCC----ccCCcCChHHhcCCCCCeEECcCCccc----------------------
Confidence 122334666777777776642 111112235778899999999988741
Q ss_pred CCCCCCCC-CCCcc--cceEeccCCcCceeeCcccCCCCCCCCCCCCCCCCCCccccCcccccccccCCCccccchhhhc
Q 047321 622 PPLSHLPP-LGKLP--LKKLELRDLESVKRVGNEFLGIEESSEDDPSSSSSSPSVIAFPKLKSLEIDGMKELEEWNYRIT 698 (807)
Q Consensus 622 p~~~~lp~-l~~L~--L~~L~L~~~~~l~~i~~~~~~~~~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~ 698 (807)
..+|. ++.++ |++|+++++.....++.. +..++ |+.|+++++ .+.....
T Consensus 163 ---~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~--------------------~~~l~-L~~L~Ls~N-~l~~~~~--- 214 (313)
T 1ogq_A 163 ---GAIPDSYGSFSKLFTSMTISRNRLTGKIPPT--------------------FANLN-LAFVDLSRN-MLEGDAS--- 214 (313)
T ss_dssp ---EECCGGGGCCCTTCCEEECCSSEEEEECCGG--------------------GGGCC-CSEEECCSS-EEEECCG---
T ss_pred ---CcCCHHHhhhhhcCcEEECcCCeeeccCChH--------------------HhCCc-ccEEECcCC-cccCcCC---
Confidence 13343 55554 899999886532244433 23455 999999986 4543332
Q ss_pred cccCCCCCCcccEEEEccCCCCCCCcccccCCCCccEEeeccCcccccccccccccCCCCCCCCeeeeccCCCcccCCcc
Q 047321 699 RKENISIMPRLSSLQIMNCRKLKALPDYLLQTIALQKLSIYSCDLLEELPILEDRRTTDIPRLSSLAIWYCPKLKVLPDY 778 (807)
Q Consensus 699 ~~~~~~~l~~L~~L~l~~c~~L~~lp~~l~~l~~L~~L~l~~c~~l~~lP~~~~~~~~~l~~L~~L~i~~c~~l~~lP~~ 778 (807)
..+..+++|+.|++++| .+...+..+..+++|++|++++|...+.+| ..+..+++|+.|++++|+..+.+|..
T Consensus 215 --~~~~~l~~L~~L~L~~N-~l~~~~~~~~~l~~L~~L~Ls~N~l~~~~p----~~l~~l~~L~~L~Ls~N~l~~~ip~~ 287 (313)
T 1ogq_A 215 --VLFGSDKNTQKIHLAKN-SLAFDLGKVGLSKNLNGLDLRNNRIYGTLP----QGLTQLKFLHSLNVSFNNLCGEIPQG 287 (313)
T ss_dssp --GGCCTTSCCSEEECCSS-EECCBGGGCCCCTTCCEEECCSSCCEECCC----GGGGGCTTCCEEECCSSEEEEECCCS
T ss_pred --HHHhcCCCCCEEECCCC-ceeeecCcccccCCCCEEECcCCcccCcCC----hHHhcCcCCCEEECcCCcccccCCCC
Confidence 35678999999999999 555555568889999999999986555788 77889999999999998766688865
Q ss_pred CCCCCcccccccccchhhh
Q 047321 779 LLRTTTLQAGEQDYENEKF 797 (807)
Q Consensus 779 l~~l~~L~~L~l~~~~~~~ 797 (807)
.++++|+.+++++|+...
T Consensus 288 -~~l~~L~~l~l~~N~~lc 305 (313)
T 1ogq_A 288 -GNLQRFDVSAYANNKCLC 305 (313)
T ss_dssp -TTGGGSCGGGTCSSSEEE
T ss_pred -ccccccChHHhcCCCCcc
Confidence 889999999999998543
No 23
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.70 E-value=3.8e-17 Score=190.69 Aligned_cols=273 Identities=15% Similarity=0.173 Sum_probs=180.0
Q ss_pred cceEEEEEeeccCCCCcc--ccCCCCceeEEEeCCCCCCCCCCCCc-cccccccCcccceeeecc-----------ccCC
Q 047321 467 DKVRHLGLKFEEGASFPM--SIHGLNRLRTLLIYDQSPYNPSLSSS-ILPELFNKLACLRALVIR-----------QSLR 532 (807)
Q Consensus 467 ~~~r~L~l~~~~~~~~~~--~~~~l~~Lr~L~l~~~~~~~l~~~i~-~LP~~i~~L~~L~~LdL~-----------~~L~ 532 (807)
.++++|++++|.+..+|. .+.++++|++|++++| .+. .+| .++++++|++|+++ .++.
T Consensus 305 ~~L~~L~L~~n~l~~ip~~~~l~~l~~L~~L~L~~N-------~l~g~ip-~~~~l~~L~~L~L~~N~l~~lp~~l~~l~ 376 (636)
T 4eco_A 305 EKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYN-------QLEGKLP-AFGSEIKLASLNLAYNQITEIPANFCGFT 376 (636)
T ss_dssp GTCCEEECCSSCCSSCCCHHHHTTCTTCCEEECCSC-------CCEEECC-CCEEEEEESEEECCSSEEEECCTTSEEEC
T ss_pred CCCCEEECCCCcCCccCchhhhccCCCCCEEeCcCC-------cCccchh-hhCCCCCCCEEECCCCccccccHhhhhhc
Confidence 567888888887777777 7888888888888877 566 777 77888888888877 3445
Q ss_pred c-cCeeEecCccCCCccccccccccc--cccCcccccCCCCCCChhHHHHhhcc-------CCCCCCeEEEEeeccCCCc
Q 047321 533 T-LEKFVVGGGVDGSNTCRLESLKNL--QLLRECGIEGLGNVSHLDEAERLQLY-------NQQNLLRLRLRFGRVVDGE 602 (807)
Q Consensus 533 ~-L~~l~~~~~~~~~~~~~i~~L~~L--~~L~~L~i~~l~~~~~~~~~~~~~l~-------~l~~L~~L~L~~~~~~~~~ 602 (807)
. |+.+.++.+.+...+ ..+..+ .+|+.|.+.+. .+....+..+. .+.+|+.|+++.|.+
T Consensus 377 ~~L~~L~Ls~N~l~~lp---~~~~~~~l~~L~~L~Ls~N----~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l---- 445 (636)
T 4eco_A 377 EQVENLSFAHNKLKYIP---NIFDAKSVSVMSAIDFSYN----EIGSVDGKNFDPLDPTPFKGINVSSINLSNNQI---- 445 (636)
T ss_dssp TTCCEEECCSSCCSSCC---SCCCTTCSSCEEEEECCSS----CTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCC----
T ss_pred ccCcEEEccCCcCcccc---hhhhhcccCccCEEECcCC----cCCCcchhhhcccccccccCCCCCEEECcCCcc----
Confidence 5 666777666533222 122222 24555555441 11111112233 556788888887764
Q ss_pred chhhhhchhhHHHHHHhhcCCCCCCCC--CCCcc-cceEeccCCcCceeeCcccC-----------CCCCCCCCCCCCCC
Q 047321 603 DEERRRKNEKDKQLLEALQPPLSHLPP--LGKLP-LKKLELRDLESVKRVGNEFL-----------GIEESSEDDPSSSS 668 (807)
Q Consensus 603 ~~~~~~~~~~~~~~l~~l~p~~~~lp~--l~~L~-L~~L~L~~~~~l~~i~~~~~-----------~~~~l~~~~~~~~~ 668 (807)
..+|. +..++ |++|+|+++. ++.++.... ....|.+.++....
T Consensus 446 ----------------------~~lp~~~~~~l~~L~~L~Ls~N~-l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~ 502 (636)
T 4eco_A 446 ----------------------SKFPKELFSTGSPLSSINLMGNM-LTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTK 502 (636)
T ss_dssp ----------------------CSCCTHHHHTTCCCSEEECCSSC-CSBCCSSSSEETTEECTTGGGCCEEECCSSCCCB
T ss_pred ----------------------CcCCHHHHccCCCCCEEECCCCC-CCCcCHHHhccccccccccCCccEEECcCCcCCc
Confidence 34444 33467 8888888754 556665443 33444555555556
Q ss_pred CCCccc--cCcccccccccCCCccccchhhhccccCCCCCCcccEEEEcc------CCCCCCCcccccCCCCccEEeecc
Q 047321 669 SSPSVI--AFPKLKSLEIDGMKELEEWNYRITRKENISIMPRLSSLQIMN------CRKLKALPDYLLQTIALQKLSIYS 740 (807)
Q Consensus 669 ~~~~~~--~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~l~~L~~L~l~~------c~~L~~lp~~l~~l~~L~~L~l~~ 740 (807)
+|..+. .+++|+.|+|+++ .+..+|. .+..+++|+.|++++ |.-...+|..+..+++|++|++++
T Consensus 503 lp~~~~~~~l~~L~~L~Ls~N-~l~~ip~------~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~ 575 (636)
T 4eco_A 503 LSDDFRATTLPYLVGIDLSYN-SFSKFPT------QPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGS 575 (636)
T ss_dssp CCGGGSTTTCTTCCEEECCSS-CCSSCCC------GGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCS
T ss_pred cChhhhhccCCCcCEEECCCC-CCCCcCh------hhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCC
Confidence 666666 8999999999995 5666554 556799999999954 545678999999999999999999
Q ss_pred CcccccccccccccCCCCCCCCeeeeccCCCcc-----cCCccCC---CCCcccccccccchh
Q 047321 741 CDLLEELPILEDRRTTDIPRLSSLAIWYCPKLK-----VLPDYLL---RTTTLQAGEQDYENE 795 (807)
Q Consensus 741 c~~l~~lP~~~~~~~~~l~~L~~L~i~~c~~l~-----~lP~~l~---~l~~L~~L~l~~~~~ 795 (807)
|. ++.+| ..+. ++|+.|++++|+... ..|.... .+...+..++.+|+.
T Consensus 576 N~-l~~ip----~~~~--~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~~~~~~i~~C~~ 631 (636)
T 4eco_A 576 ND-IRKVN----EKIT--PNISVLDIKDNPNISIDLSYVCPYIEAGMYMLFYDKTQDIRGCDA 631 (636)
T ss_dssp SC-CCBCC----SCCC--TTCCEEECCSCTTCEEECTTTHHHHHTTCCEEECCTTSEEESCGG
T ss_pred Cc-CCccC----HhHh--CcCCEEECcCCCCccccHHhcchhhhcccceeecCCccccCCCcc
Confidence 75 69998 4443 899999999976432 1122122 233345567777753
No 24
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.70 E-value=6.9e-17 Score=188.13 Aligned_cols=119 Identities=13% Similarity=0.131 Sum_probs=74.6
Q ss_pred CCcceEEEEEeeccCCCC-ccccCCCCceeEEEeCCCCCCCCCCCCccc-cccccCcccceeeecc------------cc
Q 047321 465 FGDKVRHLGLKFEEGASF-PMSIHGLNRLRTLLIYDQSPYNPSLSSSIL-PELFNKLACLRALVIR------------QS 530 (807)
Q Consensus 465 ~~~~~r~L~l~~~~~~~~-~~~~~~l~~Lr~L~l~~~~~~~l~~~i~~L-P~~i~~L~~L~~LdL~------------~~ 530 (807)
.+..+++|++++|.+..+ |..|.++++||+|++++| .+..+ |..|+++++|++|+|+ .+
T Consensus 31 l~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n-------~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~ 103 (606)
T 3t6q_A 31 LPNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRC-------QIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSG 103 (606)
T ss_dssp SCTTCCEEECTTCCCSEECTTTSTTCTTCSEEECTTC-------CCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSS
T ss_pred CCCcCcEEEccCCccCcCChhHhccCccceEEECCCC-------ccceeChhhccCccccCeeeCCCCcccccChhhhcc
Confidence 366889999999988775 667889999999999987 55555 6677778888888777 45
Q ss_pred CCccCeeEecCccCCCccccccccccccccCcccccC--CCCCCChhHHHHhhccCCCCCCeEEEEeecc
Q 047321 531 LRTLEKFVVGGGVDGSNTCRLESLKNLQLLRECGIEG--LGNVSHLDEAERLQLYNQQNLLRLRLRFGRV 598 (807)
Q Consensus 531 L~~L~~l~~~~~~~~~~~~~i~~L~~L~~L~~L~i~~--l~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~ 598 (807)
+.+|+.++++.+.+... ....+.++.+|+.|.+.+ +..+.. ..+..+++|+.|+++.|.+
T Consensus 104 l~~L~~L~L~~n~i~~l--~~~~~~~l~~L~~L~L~~n~l~~~~~------~~~~~l~~L~~L~L~~n~l 165 (606)
T 3t6q_A 104 PKALKHLFFIQTGISSI--DFIPLHNQKTLESLYLGSNHISSIKL------PKGFPTEKLKVLDFQNNAI 165 (606)
T ss_dssp CTTCCEEECTTSCCSCG--GGSCCTTCTTCCEEECCSSCCCCCCC------CTTCCCTTCCEEECCSSCC
T ss_pred cccccEeeccccCcccC--CcchhccCCcccEEECCCCcccccCc------ccccCCcccCEEEcccCcc
Confidence 66667777766653211 112344555555555543 111110 0233356666666666553
No 25
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.70 E-value=3.4e-17 Score=190.73 Aligned_cols=271 Identities=15% Similarity=0.124 Sum_probs=186.9
Q ss_pred CcceEEEEEeeccCCCCccccCCCCceeEEEeCCCCCCCCCCCCccccccccCcccceeeeccc----------cCCccC
Q 047321 466 GDKVRHLGLKFEEGASFPMSIHGLNRLRTLLIYDQSPYNPSLSSSILPELFNKLACLRALVIRQ----------SLRTLE 535 (807)
Q Consensus 466 ~~~~r~L~l~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~l~~~i~~LP~~i~~L~~L~~LdL~~----------~L~~L~ 535 (807)
..+++.+++.++.+..+| .+..+++|++|++.+| .+..+| .+ .+++|++|+++. .+.+|+
T Consensus 284 l~~L~~L~l~~~~~~~l~-~l~~~~~L~~L~l~~n-------~l~~lp-~~-~l~~L~~L~l~~n~~~~~~~~~~l~~L~ 353 (606)
T 3vq2_A 284 LANVSAMSLAGVSIKYLE-DVPKHFKWQSLSIIRC-------QLKQFP-TL-DLPFLKSLTLTMNKGSISFKKVALPSLS 353 (606)
T ss_dssp GTTCSEEEEESCCCCCCC-CCCTTCCCSEEEEESC-------CCSSCC-CC-CCSSCCEEEEESCSSCEECCCCCCTTCC
T ss_pred CCCCCEEEecCccchhhh-hccccccCCEEEcccc-------cCcccc-cC-CCCccceeeccCCcCccchhhccCCCCC
Confidence 467888999988887777 7888999999999998 678888 45 899999999872 356666
Q ss_pred eeEecCccCCCccccccccccccccCcccccCCCCCCChhHHHHhhccCCCCCCeEEEEeeccCCCcchhhhhchhhHHH
Q 047321 536 KFVVGGGVDGSNTCRLESLKNLQLLRECGIEGLGNVSHLDEAERLQLYNQQNLLRLRLRFGRVVDGEDEERRRKNEKDKQ 615 (807)
Q Consensus 536 ~l~~~~~~~~~~~~~i~~L~~L~~L~~L~i~~l~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~ 615 (807)
.++++.+.+...+.....+..+.+|+.|.+.+.. +... +..+.++++|+.|+++.|.+.
T Consensus 354 ~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~-l~~~----~~~~~~l~~L~~L~l~~n~l~---------------- 412 (606)
T 3vq2_A 354 YLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNG-AIIM----SANFMGLEELQHLDFQHSTLK---------------- 412 (606)
T ss_dssp EEECCSSCEEEEEECCHHHHCCSCCCEEECCSCS-EEEE----CCCCTTCTTCCEEECTTSEEE----------------
T ss_pred EEECcCCccCCCcchhhhhccCCcccEeECCCCc-cccc----hhhccCCCCCCeeECCCCccC----------------
Confidence 6666655421111112334455556665555421 1110 124566677777777766531
Q ss_pred HHHhhcCCCCCCC--CCCCcc-cceEeccCCcCceeeCcccCCCCCCCCCCCCCCCCCCccccCcccccccccCCCcccc
Q 047321 616 LLEALQPPLSHLP--PLGKLP-LKKLELRDLESVKRVGNEFLGIEESSEDDPSSSSSSPSVIAFPKLKSLEIDGMKELEE 692 (807)
Q Consensus 616 ~l~~l~p~~~~lp--~l~~L~-L~~L~L~~~~~l~~i~~~~~~~~~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~ 692 (807)
...| .++.++ |++|+++++. +.... +..+..+++|+.|+++++ .+..
T Consensus 413 ---------~~~~~~~~~~l~~L~~L~l~~n~-l~~~~-------------------~~~~~~l~~L~~L~l~~n-~l~~ 462 (606)
T 3vq2_A 413 ---------RVTEFSAFLSLEKLLYLDISYTN-TKIDF-------------------DGIFLGLTSLNTLKMAGN-SFKD 462 (606)
T ss_dssp ---------STTTTTTTTTCTTCCEEECTTSC-CEECC-------------------TTTTTTCTTCCEEECTTC-EEGG
T ss_pred ---------CccChhhhhccccCCEEECcCCC-CCccc-------------------hhhhcCCCCCCEEECCCC-cCCC
Confidence 1112 356667 7777777655 33221 112457899999999986 4443
Q ss_pred chhhhccccCCCCCCcccEEEEccCCCCCC-CcccccCCCCccEEeeccCcccccccccccccCCCCCCCCeeeeccCCC
Q 047321 693 WNYRITRKENISIMPRLSSLQIMNCRKLKA-LPDYLLQTIALQKLSIYSCDLLEELPILEDRRTTDIPRLSSLAIWYCPK 771 (807)
Q Consensus 693 ~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~-lp~~l~~l~~L~~L~l~~c~~l~~lP~~~~~~~~~l~~L~~L~i~~c~~ 771 (807)
... +..+..+++|+.|++++| .+.. .|..+..+++|++|++++|.-....| ..+..+++|+.|++++|.
T Consensus 463 ~~~----~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~----~~~~~l~~L~~L~l~~N~- 532 (606)
T 3vq2_A 463 NTL----SNVFANTTNLTFLDLSKC-QLEQISWGVFDTLHRLQLLNMSHNNLLFLDS----SHYNQLYSLSTLDCSFNR- 532 (606)
T ss_dssp GEE----CSCCTTCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEECCSSCCSCEEG----GGTTTCTTCCEEECTTSC-
T ss_pred cch----HHhhccCCCCCEEECCCC-cCCccChhhhcccccCCEEECCCCcCCCcCH----HHccCCCcCCEEECCCCc-
Confidence 111 235678999999999999 5554 46778999999999999985444446 778899999999999865
Q ss_pred cccCCccCCCCC-cccccccccchhhhhhhhhhhccC
Q 047321 772 LKVLPDYLLRTT-TLQAGEQDYENEKFSQRIAKMFCW 807 (807)
Q Consensus 772 l~~lP~~l~~l~-~L~~L~l~~~~~~~~~~~~~~~~~ 807 (807)
++.+|..+..++ +|+.|++++|++...-++..+..|
T Consensus 533 l~~~p~~~~~l~~~L~~l~l~~N~~~c~c~~~~~~~~ 569 (606)
T 3vq2_A 533 IETSKGILQHFPKSLAFFNLTNNSVACICEHQKFLQW 569 (606)
T ss_dssp CCCEESCGGGSCTTCCEEECCSCCCCCSSTTHHHHTT
T ss_pred CcccCHhHhhhcccCcEEEccCCCcccCCccHHHHHH
Confidence 889998898887 699999999998876655544444
No 26
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.70 E-value=1.2e-16 Score=182.57 Aligned_cols=90 Identities=20% Similarity=0.141 Sum_probs=58.8
Q ss_pred CCCcccEEEEccCCCCCCCcccccCCCCccEEeeccCcccccccccccccCCCCCCCCeeeeccCCCcccCCcc-CCCCC
Q 047321 705 IMPRLSSLQIMNCRKLKALPDYLLQTIALQKLSIYSCDLLEELPILEDRRTTDIPRLSSLAIWYCPKLKVLPDY-LLRTT 783 (807)
Q Consensus 705 ~l~~L~~L~l~~c~~L~~lp~~l~~l~~L~~L~l~~c~~l~~lP~~~~~~~~~l~~L~~L~i~~c~~l~~lP~~-l~~l~ 783 (807)
.+++|+.|++++|.-...+|..+. ++|+.|++++| .+..+| ..+..+++|++|++++| .++.+|.. +.+++
T Consensus 397 ~l~~L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N-~l~~ip----~~~~~l~~L~~L~L~~N-~l~~l~~~~~~~l~ 468 (520)
T 2z7x_B 397 WTKSLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSN-KIKSIP----KQVVKLEALQELNVASN-QLKSVPDGIFDRLT 468 (520)
T ss_dssp CCTTCCEEECCSSCCCGGGGGSCC--TTCCEEECCSS-CCCCCC----GGGGGCTTCCEEECCSS-CCCCCCTTTTTTCT
T ss_pred cCccCCEEECcCCCCCcchhhhhc--ccCCEEECCCC-cccccc----hhhhcCCCCCEEECCCC-cCCccCHHHhccCC
Confidence 344444444444422223333322 56666666664 455666 55668889999999885 57788865 88899
Q ss_pred cccccccccchhhhhhhhh
Q 047321 784 TLQAGEQDYENEKFSQRIA 802 (807)
Q Consensus 784 ~L~~L~l~~~~~~~~~~~~ 802 (807)
+|+.|++++|++...-++.
T Consensus 469 ~L~~L~l~~N~~~c~c~~~ 487 (520)
T 2z7x_B 469 SLQKIWLHTNPWDCSCPRI 487 (520)
T ss_dssp TCCEEECCSSCBCCCHHHH
T ss_pred cccEEECcCCCCcccCCch
Confidence 9999999999887655443
No 27
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.70 E-value=1.2e-16 Score=185.99 Aligned_cols=93 Identities=15% Similarity=0.109 Sum_probs=67.1
Q ss_pred CCCCCCcccEEEEccCCCCCCCcccccCCCCccEEeeccCccccc-ccccccccCCCCCCCCeeeeccCCCcccCCccCC
Q 047321 702 NISIMPRLSSLQIMNCRKLKALPDYLLQTIALQKLSIYSCDLLEE-LPILEDRRTTDIPRLSSLAIWYCPKLKVLPDYLL 780 (807)
Q Consensus 702 ~~~~l~~L~~L~l~~c~~L~~lp~~l~~l~~L~~L~l~~c~~l~~-lP~~~~~~~~~l~~L~~L~i~~c~~l~~lP~~l~ 780 (807)
.+..+++|+.|++++|.-....|..+..+++|++|++++|..... +| ..+..+++|+.|++++|......|..+.
T Consensus 419 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~----~~~~~l~~L~~L~Ls~n~l~~~~~~~~~ 494 (606)
T 3vq2_A 419 AFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLS----NVFANTTNLTFLDLSKCQLEQISWGVFD 494 (606)
T ss_dssp TTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEEC----SCCTTCTTCCEEECTTSCCCEECTTTTT
T ss_pred hhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchH----HhhccCCCCCEEECCCCcCCccChhhhc
Confidence 345667777777777744444566677788888888887653332 45 5677888889999988765555567788
Q ss_pred CCCcccccccccchhhhh
Q 047321 781 RTTTLQAGEQDYENEKFS 798 (807)
Q Consensus 781 ~l~~L~~L~l~~~~~~~~ 798 (807)
++++|+.|++++|++...
T Consensus 495 ~l~~L~~L~Ls~N~l~~~ 512 (606)
T 3vq2_A 495 TLHRLQLLNMSHNNLLFL 512 (606)
T ss_dssp TCTTCCEEECCSSCCSCE
T ss_pred ccccCCEEECCCCcCCCc
Confidence 889999999998887643
No 28
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.69 E-value=3e-16 Score=180.87 Aligned_cols=118 Identities=17% Similarity=0.102 Sum_probs=87.5
Q ss_pred CcceEEEEEeeccCCCCc-cccCCCCceeEEEeCCCCCCCCCCCCccc-cccccCcccceeeecc---------ccCCcc
Q 047321 466 GDKVRHLGLKFEEGASFP-MSIHGLNRLRTLLIYDQSPYNPSLSSSIL-PELFNKLACLRALVIR---------QSLRTL 534 (807)
Q Consensus 466 ~~~~r~L~l~~~~~~~~~-~~~~~l~~Lr~L~l~~~~~~~l~~~i~~L-P~~i~~L~~L~~LdL~---------~~L~~L 534 (807)
+..+++|++++|.+..++ ..|.++++||+|++++| .+..+ |..++++++|++|+|+ ..+.+|
T Consensus 51 ~~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N-------~l~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~l~~L 123 (562)
T 3a79_B 51 PPRTKALSLSQNSISELRMPDISFLSELRVLRLSHN-------RIRSLDFHVFLFNQDLEYLDVSHNRLQNISCCPMASL 123 (562)
T ss_dssp CTTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSC-------CCCEECTTTTTTCTTCCEEECTTSCCCEECSCCCTTC
T ss_pred CCCcCEEECCCCCccccChhhhccCCCccEEECCCC-------CCCcCCHHHhCCCCCCCEEECCCCcCCccCccccccC
Confidence 578999999999998765 68999999999999998 77777 6789999999999998 456788
Q ss_pred CeeEecCccCCCccccccccccccccCcccccCCCCCCChhHHHHhhccCCCCC--CeEEEEeecc
Q 047321 535 EKFVVGGGVDGSNTCRLESLKNLQLLRECGIEGLGNVSHLDEAERLQLYNQQNL--LRLRLRFGRV 598 (807)
Q Consensus 535 ~~l~~~~~~~~~~~~~i~~L~~L~~L~~L~i~~l~~~~~~~~~~~~~l~~l~~L--~~L~L~~~~~ 598 (807)
+.++++.+.+...+ ....+.++.+|+.|.+.+- .+.. ..+..+++| +.|++++|.+
T Consensus 124 ~~L~Ls~N~l~~l~-~p~~~~~l~~L~~L~L~~n-~l~~------~~~~~l~~L~L~~L~L~~n~l 181 (562)
T 3a79_B 124 RHLDLSFNDFDVLP-VCKEFGNLTKLTFLGLSAA-KFRQ------LDLLPVAHLHLSCILLDLVSY 181 (562)
T ss_dssp SEEECCSSCCSBCC-CCGGGGGCTTCCEEEEECS-BCCT------TTTGGGTTSCEEEEEEEESSC
T ss_pred CEEECCCCCccccC-chHhhcccCcccEEecCCC-cccc------CchhhhhhceeeEEEeecccc
Confidence 88888887632211 1245677778888777652 1221 123444455 8888888764
No 29
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.69 E-value=1e-16 Score=180.82 Aligned_cols=275 Identities=17% Similarity=0.126 Sum_probs=192.6
Q ss_pred EEEEEeeccCCCCccccCCCCceeEEEeCCCCCCCCCCCCccc-cccccCcccceeeecc------------ccCCccCe
Q 047321 470 RHLGLKFEEGASFPMSIHGLNRLRTLLIYDQSPYNPSLSSSIL-PELFNKLACLRALVIR------------QSLRTLEK 536 (807)
Q Consensus 470 r~L~l~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~l~~~i~~L-P~~i~~L~~L~~LdL~------------~~L~~L~~ 536 (807)
+.+..+++.+..+|..+. ++|++|++++| .+..+ |..+.++++|++|+|+ .++.+|+.
T Consensus 14 ~~v~c~~~~l~~ip~~~~--~~l~~L~L~~n-------~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~ 84 (477)
T 2id5_A 14 RAVLCHRKRFVAVPEGIP--TETRLLDLGKN-------RIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRT 84 (477)
T ss_dssp TEEECCSCCCSSCCSCCC--TTCSEEECCSS-------CCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCE
T ss_pred CEEEeCCCCcCcCCCCCC--CCCcEEECCCC-------ccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCE
Confidence 456666677777887664 68999999998 78877 5789999999999998 46777888
Q ss_pred eEecCccCCCccccccccccccccCcccccCCCCCCChhHHHHhhccCCCCCCeEEEEeeccCCCcchhhhhchhhHHHH
Q 047321 537 FVVGGGVDGSNTCRLESLKNLQLLRECGIEGLGNVSHLDEAERLQLYNQQNLLRLRLRFGRVVDGEDEERRRKNEKDKQL 616 (807)
Q Consensus 537 l~~~~~~~~~~~~~i~~L~~L~~L~~L~i~~l~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~ 616 (807)
+.++.+.+...+ ...+.++.+|+.|.+.+-. +.......+.++++|+.|+++.|.+.
T Consensus 85 L~L~~n~l~~~~--~~~~~~l~~L~~L~Ls~n~----i~~~~~~~~~~l~~L~~L~l~~n~l~----------------- 141 (477)
T 2id5_A 85 LGLRSNRLKLIP--LGVFTGLSNLTKLDISENK----IVILLDYMFQDLYNLKSLEVGDNDLV----------------- 141 (477)
T ss_dssp EECCSSCCCSCC--TTSSTTCTTCCEEECTTSC----CCEECTTTTTTCTTCCEEEECCTTCC-----------------
T ss_pred EECCCCcCCccC--cccccCCCCCCEEECCCCc----cccCChhHccccccCCEEECCCCccc-----------------
Confidence 888877532221 1234566777777766421 11111234678889999999887641
Q ss_pred HHhhcCCCCCCC--CCCCcc-cceEeccCCcCceeeCcc-cCCCCCCC---CCCCCCCCCC-CccccCcccccccccCCC
Q 047321 617 LEALQPPLSHLP--PLGKLP-LKKLELRDLESVKRVGNE-FLGIEESS---EDDPSSSSSS-PSVIAFPKLKSLEIDGMK 688 (807)
Q Consensus 617 l~~l~p~~~~lp--~l~~L~-L~~L~L~~~~~l~~i~~~-~~~~~~l~---~~~~~~~~~~-~~~~~l~~L~~L~l~~~~ 688 (807)
.++ .++.++ |+.|+|+++. ++.++.. +.....|. +.++.....+ ..+..+++|+.|++++++
T Consensus 142 ---------~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~ 211 (477)
T 2id5_A 142 ---------YISHRAFSGLNSLEQLTLEKCN-LTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWP 211 (477)
T ss_dssp ---------EECTTSSTTCTTCCEEEEESCC-CSSCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCT
T ss_pred ---------eeChhhccCCCCCCEEECCCCc-CcccChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCc
Confidence 121 367788 9999998854 5555432 22333332 2223222222 235578889999998887
Q ss_pred ccccchhhhccccCCCCCCcccEEEEccCCCCCCCcc-cccCCCCccEEeeccCcccccccccccccCCCCCCCCeeeec
Q 047321 689 ELEEWNYRITRKENISIMPRLSSLQIMNCRKLKALPD-YLLQTIALQKLSIYSCDLLEELPILEDRRTTDIPRLSSLAIW 767 (807)
Q Consensus 689 ~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~lp~-~l~~l~~L~~L~l~~c~~l~~lP~~~~~~~~~l~~L~~L~i~ 767 (807)
.+..++. .....++|+.|++++| +++.+|. .+..+++|+.|++++|. +..+| ...+..+++|+.|+++
T Consensus 212 ~~~~~~~------~~~~~~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~---~~~~~~l~~L~~L~L~ 280 (477)
T 2id5_A 212 YLDTMTP------NCLYGLNLTSLSITHC-NLTAVPYLAVRHLVYLRFLNLSYNP-ISTIE---GSMLHELLRLQEIQLV 280 (477)
T ss_dssp TCCEECT------TTTTTCCCSEEEEESS-CCCSCCHHHHTTCTTCCEEECCSSC-CCEEC---TTSCTTCTTCCEEECC
T ss_pred cccccCc------ccccCccccEEECcCC-cccccCHHHhcCccccCeeECCCCc-CCccC---hhhccccccCCEEECC
Confidence 7766654 3344568999999998 7888884 57889999999999964 66665 1457789999999999
Q ss_pred cCCCcccCCccCCCCCcccccccccchhhh
Q 047321 768 YCPKLKVLPDYLLRTTTLQAGEQDYENEKF 797 (807)
Q Consensus 768 ~c~~l~~lP~~l~~l~~L~~L~l~~~~~~~ 797 (807)
+|......|..+..+++|+.|++++|.+..
T Consensus 281 ~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 310 (477)
T 2id5_A 281 GGQLAVVEPYAFRGLNYLRVLNVSGNQLTT 310 (477)
T ss_dssp SSCCSEECTTTBTTCTTCCEEECCSSCCSC
T ss_pred CCccceECHHHhcCcccCCEEECCCCcCce
Confidence 865544457889999999999999998764
No 30
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.68 E-value=1.7e-16 Score=177.67 Aligned_cols=241 Identities=16% Similarity=0.242 Sum_probs=164.5
Q ss_pred EEEEEeeccCCCCccccCCCCceeEEEeCCCCCCCCCCCCccc-cccccCcccceeeeccccCCccCeeEecCccCCCcc
Q 047321 470 RHLGLKFEEGASFPMSIHGLNRLRTLLIYDQSPYNPSLSSSIL-PELFNKLACLRALVIRQSLRTLEKFVVGGGVDGSNT 548 (807)
Q Consensus 470 r~L~l~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~l~~~i~~L-P~~i~~L~~L~~LdL~~~L~~L~~l~~~~~~~~~~~ 548 (807)
+.++..+..+..+|..+. ++|++|++++| .+..+ |..++++++|++|+|+.+ .+..+
T Consensus 57 ~~v~c~~~~l~~iP~~~~--~~l~~L~L~~n-------~i~~~~~~~~~~l~~L~~L~Ls~n--~i~~~----------- 114 (452)
T 3zyi_A 57 SKVVCTRRGLSEVPQGIP--SNTRYLNLMEN-------NIQMIQADTFRHLHHLEVLQLGRN--SIRQI----------- 114 (452)
T ss_dssp CEEECCSSCCSSCCSCCC--TTCSEEECCSS-------CCCEECTTTTTTCTTCCEEECCSS--CCCEE-----------
T ss_pred cEEEECCCCcCccCCCCC--CCccEEECcCC-------cCceECHHHcCCCCCCCEEECCCC--ccCCc-----------
Confidence 344445555555555443 46666777666 55555 455666666766666522 11111
Q ss_pred ccccccccccccCcccccC--CCCCCChhHHHHhhccCCCCCCeEEEEeeccCCCcchhhhhchhhHHHHHHhhcCCCCC
Q 047321 549 CRLESLKNLQLLRECGIEG--LGNVSHLDEAERLQLYNQQNLLRLRLRFGRVVDGEDEERRRKNEKDKQLLEALQPPLSH 626 (807)
Q Consensus 549 ~~i~~L~~L~~L~~L~i~~--l~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~l~p~~~~ 626 (807)
....+..+.+|+.|.+.+ +..+. ...+.++++|+.|+|+.|.+ ..
T Consensus 115 -~~~~~~~l~~L~~L~L~~n~l~~~~------~~~~~~l~~L~~L~L~~N~l--------------------------~~ 161 (452)
T 3zyi_A 115 -EVGAFNGLASLNTLELFDNWLTVIP------SGAFEYLSKLRELWLRNNPI--------------------------ES 161 (452)
T ss_dssp -CTTTTTTCTTCCEEECCSSCCSBCC------TTTSSSCTTCCEEECCSCCC--------------------------CE
T ss_pred -ChhhccCcccCCEEECCCCcCCccC------hhhhcccCCCCEEECCCCCc--------------------------ce
Confidence 112233444455544443 11111 12467788999999998875 23
Q ss_pred CCC--CCCcc-cceEeccCCcCceeeCcccCCCCCCCCCCCCCCCCCCccccCcccccccccCCCccccchhhhccccCC
Q 047321 627 LPP--LGKLP-LKKLELRDLESVKRVGNEFLGIEESSEDDPSSSSSSPSVIAFPKLKSLEIDGMKELEEWNYRITRKENI 703 (807)
Q Consensus 627 lp~--l~~L~-L~~L~L~~~~~l~~i~~~~~~~~~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~ 703 (807)
+|. +..++ |+.|+|++++.++.++... +..+++|+.|+++++ ++..++ .+
T Consensus 162 ~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~-------------------~~~l~~L~~L~L~~n-~l~~~~-------~~ 214 (452)
T 3zyi_A 162 IPSYAFNRVPSLMRLDLGELKKLEYISEGA-------------------FEGLFNLKYLNLGMC-NIKDMP-------NL 214 (452)
T ss_dssp ECTTTTTTCTTCCEEECCCCTTCCEECTTT-------------------TTTCTTCCEEECTTS-CCSSCC-------CC
T ss_pred eCHhHHhcCCcccEEeCCCCCCccccChhh-------------------ccCCCCCCEEECCCC-cccccc-------cc
Confidence 443 77889 9999999988888887542 347899999999985 566554 35
Q ss_pred CCCCcccEEEEccCCCCCCC-cccccCCCCccEEeeccCcccccccccccccCCCCCCCCeeeeccCCCcccCC-ccCCC
Q 047321 704 SIMPRLSSLQIMNCRKLKAL-PDYLLQTIALQKLSIYSCDLLEELPILEDRRTTDIPRLSSLAIWYCPKLKVLP-DYLLR 781 (807)
Q Consensus 704 ~~l~~L~~L~l~~c~~L~~l-p~~l~~l~~L~~L~l~~c~~l~~lP~~~~~~~~~l~~L~~L~i~~c~~l~~lP-~~l~~ 781 (807)
..+++|+.|++++| .+..+ |..+..+++|+.|++++|. +..++ ...+..+++|+.|++++| .++.+| ..+..
T Consensus 215 ~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~---~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~ 288 (452)
T 3zyi_A 215 TPLVGLEELEMSGN-HFPEIRPGSFHGLSSLKKLWVMNSQ-VSLIE---RNAFDGLASLVELNLAHN-NLSSLPHDLFTP 288 (452)
T ss_dssp TTCTTCCEEECTTS-CCSEECGGGGTTCTTCCEEECTTSC-CCEEC---TTTTTTCTTCCEEECCSS-CCSCCCTTSSTT
T ss_pred cccccccEEECcCC-cCcccCcccccCccCCCEEEeCCCc-CceEC---HHHhcCCCCCCEEECCCC-cCCccChHHhcc
Confidence 67899999999999 56555 7778999999999999964 55543 156788999999999986 677777 55788
Q ss_pred CCcccccccccchhhhh
Q 047321 782 TTTLQAGEQDYENEKFS 798 (807)
Q Consensus 782 l~~L~~L~l~~~~~~~~ 798 (807)
+++|+.|++++|++...
T Consensus 289 l~~L~~L~L~~Np~~Cd 305 (452)
T 3zyi_A 289 LRYLVELHLHHNPWNCD 305 (452)
T ss_dssp CTTCCEEECCSSCEECS
T ss_pred ccCCCEEEccCCCcCCC
Confidence 99999999999987544
No 31
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.68 E-value=2.1e-16 Score=176.25 Aligned_cols=241 Identities=17% Similarity=0.263 Sum_probs=168.7
Q ss_pred EEEEEeeccCCCCccccCCCCceeEEEeCCCCCCCCCCCCcccc-ccccCcccceeeeccccCCccCeeEecCccCCCcc
Q 047321 470 RHLGLKFEEGASFPMSIHGLNRLRTLLIYDQSPYNPSLSSSILP-ELFNKLACLRALVIRQSLRTLEKFVVGGGVDGSNT 548 (807)
Q Consensus 470 r~L~l~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~l~~~i~~LP-~~i~~L~~L~~LdL~~~L~~L~~l~~~~~~~~~~~ 548 (807)
+.++..+..+..+|..+. +++++|++++| .+..+| ..+.++++|++|+|+.+ .+..+
T Consensus 46 ~~v~c~~~~l~~iP~~~~--~~l~~L~L~~n-------~i~~~~~~~~~~l~~L~~L~Ls~n--~i~~i----------- 103 (440)
T 3zyj_A 46 SKVICVRKNLREVPDGIS--TNTRLLNLHEN-------QIQIIKVNSFKHLRHLEILQLSRN--HIRTI----------- 103 (440)
T ss_dssp CEEECCSCCCSSCCSCCC--TTCSEEECCSC-------CCCEECTTTTSSCSSCCEEECCSS--CCCEE-----------
T ss_pred CEEEeCCCCcCcCCCCCC--CCCcEEEccCC-------cCCeeCHHHhhCCCCCCEEECCCC--cCCcc-----------
Confidence 345555556666666554 56777777776 566554 56777777777777622 11111
Q ss_pred ccccccccccccCcccccC--CCCCCChhHHHHhhccCCCCCCeEEEEeeccCCCcchhhhhchhhHHHHHHhhcCCCCC
Q 047321 549 CRLESLKNLQLLRECGIEG--LGNVSHLDEAERLQLYNQQNLLRLRLRFGRVVDGEDEERRRKNEKDKQLLEALQPPLSH 626 (807)
Q Consensus 549 ~~i~~L~~L~~L~~L~i~~--l~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~l~p~~~~ 626 (807)
....+..+.+|+.|.+.+ +..+. ...+.++++|+.|+|+.|.+ ..
T Consensus 104 -~~~~~~~l~~L~~L~L~~n~l~~~~------~~~~~~l~~L~~L~L~~N~i--------------------------~~ 150 (440)
T 3zyj_A 104 -EIGAFNGLANLNTLELFDNRLTTIP------NGAFVYLSKLKELWLRNNPI--------------------------ES 150 (440)
T ss_dssp -CGGGGTTCSSCCEEECCSSCCSSCC------TTTSCSCSSCCEEECCSCCC--------------------------CE
T ss_pred -ChhhccCCccCCEEECCCCcCCeeC------HhHhhccccCceeeCCCCcc--------------------------cc
Confidence 112344455555555543 22111 12467788999999998875 23
Q ss_pred CCC--CCCcc-cceEeccCCcCceeeCcccCCCCCCCCCCCCCCCCCCccccCcccccccccCCCccccchhhhccccCC
Q 047321 627 LPP--LGKLP-LKKLELRDLESVKRVGNEFLGIEESSEDDPSSSSSSPSVIAFPKLKSLEIDGMKELEEWNYRITRKENI 703 (807)
Q Consensus 627 lp~--l~~L~-L~~L~L~~~~~l~~i~~~~~~~~~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~ 703 (807)
+|. +..++ |++|+|++++.+..++... +..+++|+.|+++++ ++..++. +
T Consensus 151 ~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~-------------------~~~l~~L~~L~L~~n-~l~~~~~-------~ 203 (440)
T 3zyj_A 151 IPSYAFNRIPSLRRLDLGELKRLSYISEGA-------------------FEGLSNLRYLNLAMC-NLREIPN-------L 203 (440)
T ss_dssp ECTTTTTTCTTCCEEECCCCTTCCEECTTT-------------------TTTCSSCCEEECTTS-CCSSCCC-------C
T ss_pred cCHHHhhhCcccCEeCCCCCCCcceeCcch-------------------hhcccccCeecCCCC-cCccccc-------c
Confidence 333 77888 9999999988888776532 347899999999986 6666653 5
Q ss_pred CCCCcccEEEEccCCCCCCC-cccccCCCCccEEeeccCcccccccccccccCCCCCCCCeeeeccCCCcccCC-ccCCC
Q 047321 704 SIMPRLSSLQIMNCRKLKAL-PDYLLQTIALQKLSIYSCDLLEELPILEDRRTTDIPRLSSLAIWYCPKLKVLP-DYLLR 781 (807)
Q Consensus 704 ~~l~~L~~L~l~~c~~L~~l-p~~l~~l~~L~~L~l~~c~~l~~lP~~~~~~~~~l~~L~~L~i~~c~~l~~lP-~~l~~ 781 (807)
..+++|+.|++++| .+..+ |..+..+++|+.|+++++ .+..++ ...+..+++|+.|++++| .++.+| ..+..
T Consensus 204 ~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~---~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~ 277 (440)
T 3zyj_A 204 TPLIKLDELDLSGN-HLSAIRPGSFQGLMHLQKLWMIQS-QIQVIE---RNAFDNLQSLVEINLAHN-NLTLLPHDLFTP 277 (440)
T ss_dssp TTCSSCCEEECTTS-CCCEECTTTTTTCTTCCEEECTTC-CCCEEC---TTSSTTCTTCCEEECTTS-CCCCCCTTTTSS
T ss_pred CCCcccCEEECCCC-ccCccChhhhccCccCCEEECCCC-ceeEEC---hhhhcCCCCCCEEECCCC-CCCccChhHhcc
Confidence 67899999999999 66666 677889999999999996 455554 156788999999999985 577777 55688
Q ss_pred CCcccccccccchhhhh
Q 047321 782 TTTLQAGEQDYENEKFS 798 (807)
Q Consensus 782 l~~L~~L~l~~~~~~~~ 798 (807)
+++|+.|++++|++..+
T Consensus 278 l~~L~~L~L~~Np~~Cd 294 (440)
T 3zyj_A 278 LHHLERIHLHHNPWNCN 294 (440)
T ss_dssp CTTCCEEECCSSCEECS
T ss_pred ccCCCEEEcCCCCccCC
Confidence 99999999999987543
No 32
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.67 E-value=4e-17 Score=189.32 Aligned_cols=272 Identities=15% Similarity=0.131 Sum_probs=168.8
Q ss_pred cceEEEEEeeccCCCCccc-cCCCCceeEEEeCCCCCCCCCCCCcccc-ccccCcccceeeecc------------ccCC
Q 047321 467 DKVRHLGLKFEEGASFPMS-IHGLNRLRTLLIYDQSPYNPSLSSSILP-ELFNKLACLRALVIR------------QSLR 532 (807)
Q Consensus 467 ~~~r~L~l~~~~~~~~~~~-~~~l~~Lr~L~l~~~~~~~l~~~i~~LP-~~i~~L~~L~~LdL~------------~~L~ 532 (807)
..++.+++.++.+..+|.. +.++++|++|++++| .+..+| ..++.+++|++|+|+ .++.
T Consensus 51 ~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n-------~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~ 123 (597)
T 3oja_B 51 NNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDL-------QIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVP 123 (597)
T ss_dssp CCCSEEEESSCEESEECTHHHHHCCCCSEEECTTS-------CCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCT
T ss_pred CCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCC-------CCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCC
Confidence 4566666666666555543 455677777777766 555554 366777777777766 2334
Q ss_pred ccCeeEecCccCCCccccccccccccccCcccccCCCCCCChhHHHHhhccCCCCCCeEEEEeeccCCCcchhhhhchhh
Q 047321 533 TLEKFVVGGGVDGSNTCRLESLKNLQLLRECGIEGLGNVSHLDEAERLQLYNQQNLLRLRLRFGRVVDGEDEERRRKNEK 612 (807)
Q Consensus 533 ~L~~l~~~~~~~~~~~~~i~~L~~L~~L~~L~i~~l~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~ 612 (807)
+|..++++++.+...+ ...+.++.+|+.|.+.+.. +. ...+..+.++++|+.|++++|.+
T Consensus 124 ~L~~L~L~~n~l~~l~--~~~~~~l~~L~~L~Ls~N~-l~---~~~~~~~~~l~~L~~L~L~~N~l-------------- 183 (597)
T 3oja_B 124 LLTVLVLERNDLSSLP--RGIFHNTPKLTTLSMSNNN-LE---RIEDDTFQATTSLQNLQLSSNRL-------------- 183 (597)
T ss_dssp TCCEEECCSSCCCCCC--TTTTTTCTTCCEEECCSSC-CC---BCCTTTTTTCTTCCEEECTTSCC--------------
T ss_pred CCCEEEeeCCCCCCCC--HHHhccCCCCCEEEeeCCc-CC---CCChhhhhcCCcCcEEECcCCCC--------------
Confidence 4444444444321111 1113455555555554421 11 11112356667777777776653
Q ss_pred HHHHHHhhcCCCCCCCCCCCcc-cceEeccCCcCceeeCcccCCCCCCCCCCCCCCCCCCccccCcccccccccCCCccc
Q 047321 613 DKQLLEALQPPLSHLPPLGKLP-LKKLELRDLESVKRVGNEFLGIEESSEDDPSSSSSSPSVIAFPKLKSLEIDGMKELE 691 (807)
Q Consensus 613 ~~~~l~~l~p~~~~lp~l~~L~-L~~L~L~~~~~l~~i~~~~~~~~~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~ 691 (807)
..+ +++.++ |+.|+++++. +..++.. .....|.+.++.....+. ..+++|+.|+++++ .+.
T Consensus 184 ------------~~~-~~~~l~~L~~L~l~~n~-l~~l~~~-~~L~~L~ls~n~l~~~~~--~~~~~L~~L~L~~n-~l~ 245 (597)
T 3oja_B 184 ------------THV-DLSLIPSLFHANVSYNL-LSTLAIP-IAVEELDASHNSINVVRG--PVNVELTILKLQHN-NLT 245 (597)
T ss_dssp ------------SBC-CGGGCTTCSEEECCSSC-CSEEECC-TTCSEEECCSSCCCEEEC--SCCSCCCEEECCSS-CCC
T ss_pred ------------CCc-ChhhhhhhhhhhcccCc-cccccCC-chhheeeccCCccccccc--ccCCCCCEEECCCC-CCC
Confidence 112 244566 7777776643 4433211 122333333333332222 23468899998885 454
Q ss_pred cchhhhccccCCCCCCcccEEEEccCCCCCCC-cccccCCCCccEEeeccCcccccccccccccCCCCCCCCeeeeccCC
Q 047321 692 EWNYRITRKENISIMPRLSSLQIMNCRKLKAL-PDYLLQTIALQKLSIYSCDLLEELPILEDRRTTDIPRLSSLAIWYCP 770 (807)
Q Consensus 692 ~~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~l-p~~l~~l~~L~~L~l~~c~~l~~lP~~~~~~~~~l~~L~~L~i~~c~ 770 (807)
..+ .+..+++|+.|++++| .+..+ |..+..+++|+.|+|++| .+..+| ..+..+++|+.|++++|
T Consensus 246 ~~~-------~l~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~l~----~~~~~l~~L~~L~Ls~N- 311 (597)
T 3oja_B 246 DTA-------WLLNYPGLVEVDLSYN-ELEKIMYHPFVKMQRLERLYISNN-RLVALN----LYGQPIPTLKVLDLSHN- 311 (597)
T ss_dssp CCG-------GGGGCTTCSEEECCSS-CCCEEESGGGTTCSSCCEEECTTS-CCCEEE----CSSSCCTTCCEEECCSS-
T ss_pred CCh-------hhccCCCCCEEECCCC-ccCCCCHHHhcCccCCCEEECCCC-CCCCCC----cccccCCCCcEEECCCC-
Confidence 433 3557899999999999 55544 778899999999999995 677888 66678999999999986
Q ss_pred CcccCCccCCCCCcccccccccchhhh
Q 047321 771 KLKVLPDYLLRTTTLQAGEQDYENEKF 797 (807)
Q Consensus 771 ~l~~lP~~l~~l~~L~~L~l~~~~~~~ 797 (807)
.+..+|..+..+++|+.|++++|++..
T Consensus 312 ~l~~i~~~~~~l~~L~~L~L~~N~l~~ 338 (597)
T 3oja_B 312 HLLHVERNQPQFDRLENLYLDHNSIVT 338 (597)
T ss_dssp CCCCCGGGHHHHTTCSEEECCSSCCCC
T ss_pred CCCccCcccccCCCCCEEECCCCCCCC
Confidence 567899888899999999999998753
No 33
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.67 E-value=1e-15 Score=163.68 Aligned_cols=265 Identities=14% Similarity=0.185 Sum_probs=143.7
Q ss_pred CcceEEEEEeeccCCCCcc-ccCCCCceeEEEeCCCCCCCCCCCCccc-cccccCcccceeeeccc-cCCccCeeEecCc
Q 047321 466 GDKVRHLGLKFEEGASFPM-SIHGLNRLRTLLIYDQSPYNPSLSSSIL-PELFNKLACLRALVIRQ-SLRTLEKFVVGGG 542 (807)
Q Consensus 466 ~~~~r~L~l~~~~~~~~~~-~~~~l~~Lr~L~l~~~~~~~l~~~i~~L-P~~i~~L~~L~~LdL~~-~L~~L~~l~~~~~ 542 (807)
+..+++|++++|.+..++. .+.++++|++|++++| .+..+ |..++++++|++|+++. .+..++.
T Consensus 51 ~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n-------~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~------ 117 (330)
T 1xku_A 51 PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINN-------KISKISPGAFAPLVKLERLYLSKNQLKELPE------ 117 (330)
T ss_dssp CTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSS-------CCCCBCTTTTTTCTTCCEEECCSSCCSBCCS------
T ss_pred CCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCC-------cCCeeCHHHhcCCCCCCEEECCCCcCCccCh------
Confidence 5689999999999887665 7899999999999998 67777 88999999999999982 2322211
Q ss_pred cCCCccccccccccccccCcccccCCCCCCChhHHHHhhccCCCCCCeEEEEeeccCCCcchhhhhchhhHHHHHHhhcC
Q 047321 543 VDGSNTCRLESLKNLQLLRECGIEGLGNVSHLDEAERLQLYNQQNLLRLRLRFGRVVDGEDEERRRKNEKDKQLLEALQP 622 (807)
Q Consensus 543 ~~~~~~~~i~~L~~L~~L~~L~i~~l~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~l~p 622 (807)
.+ ..+|+.|.+.+.. +.. .....+.++++|+.|+++.|.+...
T Consensus 118 -------~~-----~~~L~~L~l~~n~-l~~---~~~~~~~~l~~L~~L~l~~n~l~~~--------------------- 160 (330)
T 1xku_A 118 -------KM-----PKTLQELRVHENE-ITK---VRKSVFNGLNQMIVVELGTNPLKSS--------------------- 160 (330)
T ss_dssp -------SC-----CTTCCEEECCSSC-CCB---BCHHHHTTCTTCCEEECCSSCCCGG---------------------
T ss_pred -------hh-----cccccEEECCCCc-ccc---cCHhHhcCCccccEEECCCCcCCcc---------------------
Confidence 00 0223333332210 011 1111244455555555555442100
Q ss_pred CCCCCC-CCCCcc-cceEeccCCcCceeeCcccC-CCCCCCCCCCCCCCC-CCccccCcccccccccCCCccccchhhhc
Q 047321 623 PLSHLP-PLGKLP-LKKLELRDLESVKRVGNEFL-GIEESSEDDPSSSSS-SPSVIAFPKLKSLEIDGMKELEEWNYRIT 698 (807)
Q Consensus 623 ~~~~lp-~l~~L~-L~~L~L~~~~~l~~i~~~~~-~~~~l~~~~~~~~~~-~~~~~~l~~L~~L~l~~~~~l~~~~~~~~ 698 (807)
...+ .++.++ |++|+++++. ++.++..+. ....|.+.++..... +..+..+++|+.|+++++ .+...+.
T Consensus 161 --~~~~~~~~~l~~L~~L~l~~n~-l~~l~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~--- 233 (330)
T 1xku_A 161 --GIENGAFQGMKKLSYIRIADTN-ITTIPQGLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFN-SISAVDN--- 233 (330)
T ss_dssp --GBCTTGGGGCTTCCEEECCSSC-CCSCCSSCCTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSS-CCCEECT---
T ss_pred --CcChhhccCCCCcCEEECCCCc-cccCCccccccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCC-cCceeCh---
Confidence 0011 133444 5555554432 333332211 111111111111111 112346677777777764 3444432
Q ss_pred cccCCCCCCcccEEEEccCCCCCCCcccccCCCCccEEeeccCcccccccccccccCC------CCCCCCeeeeccCCCc
Q 047321 699 RKENISIMPRLSSLQIMNCRKLKALPDYLLQTIALQKLSIYSCDLLEELPILEDRRTT------DIPRLSSLAIWYCPKL 772 (807)
Q Consensus 699 ~~~~~~~l~~L~~L~l~~c~~L~~lp~~l~~l~~L~~L~l~~c~~l~~lP~~~~~~~~------~l~~L~~L~i~~c~~l 772 (807)
..+..+++|+.|++++| .+..+|.++..+++|++|++++| .+..+|. ..+. ..++|+.|++.+++..
T Consensus 234 --~~~~~l~~L~~L~L~~N-~l~~lp~~l~~l~~L~~L~l~~N-~i~~~~~---~~f~~~~~~~~~~~l~~l~l~~N~~~ 306 (330)
T 1xku_A 234 --GSLANTPHLRELHLNNN-KLVKVPGGLADHKYIQVVYLHNN-NISAIGS---NDFCPPGYNTKKASYSGVSLFSNPVQ 306 (330)
T ss_dssp --TTGGGSTTCCEEECCSS-CCSSCCTTTTTCSSCCEEECCSS-CCCCCCT---TSSSCSSCCTTSCCCSEEECCSSSSC
T ss_pred --hhccCCCCCCEEECCCC-cCccCChhhccCCCcCEEECCCC-cCCccCh---hhcCCcccccccccccceEeecCccc
Confidence 23445677777777777 66677777777777777777775 4556551 1111 2356677777765532
Q ss_pred c--cCCccCCCCCcccccccccch
Q 047321 773 K--VLPDYLLRTTTLQAGEQDYEN 794 (807)
Q Consensus 773 ~--~lP~~l~~l~~L~~L~l~~~~ 794 (807)
. ..|..+..+..|+.+++++|+
T Consensus 307 ~~~i~~~~f~~~~~l~~l~L~~N~ 330 (330)
T 1xku_A 307 YWEIQPSTFRCVYVRAAVQLGNYK 330 (330)
T ss_dssp GGGSCGGGGTTCCCGGGEEC----
T ss_pred ccccCccccccccceeEEEecccC
Confidence 1 334566677777777777663
No 34
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.67 E-value=4.2e-16 Score=174.70 Aligned_cols=274 Identities=15% Similarity=0.106 Sum_probs=176.7
Q ss_pred EEEEeeccCCCCccccCCCCceeEEEeCCCCCCCCCCCCccc-cccccCcccceeeecc-------------ccCCccCe
Q 047321 471 HLGLKFEEGASFPMSIHGLNRLRTLLIYDQSPYNPSLSSSIL-PELFNKLACLRALVIR-------------QSLRTLEK 536 (807)
Q Consensus 471 ~L~l~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~l~~~i~~L-P~~i~~L~~L~~LdL~-------------~~L~~L~~ 536 (807)
.+...++.+..+|. + .++|++|++++| .+..+ |..++++++|++|+++ .++.+|+.
T Consensus 14 ~~~c~~~~l~~lp~-l--~~~l~~L~Ls~n-------~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~ 83 (455)
T 3v47_A 14 NAICINRGLHQVPE-L--PAHVNYVDLSLN-------SIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLII 83 (455)
T ss_dssp EEECCSSCCSSCCC-C--CTTCCEEECCSS-------CCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCE
T ss_pred ccCcCCCCcccCCC-C--CCccCEEEecCC-------ccCcCChhHhccCccccEEECcCCcccceECcccccccccCCE
Confidence 45556666776776 3 389999999998 77777 7889999999999998 45778889
Q ss_pred eEecCccCCCccccccccccccccCcccccCCCCCCChhHHHHh--hccCCCCCCeEEEEeeccCCCcchhhhhchhhHH
Q 047321 537 FVVGGGVDGSNTCRLESLKNLQLLRECGIEGLGNVSHLDEAERL--QLYNQQNLLRLRLRFGRVVDGEDEERRRKNEKDK 614 (807)
Q Consensus 537 l~~~~~~~~~~~~~i~~L~~L~~L~~L~i~~l~~~~~~~~~~~~--~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~ 614 (807)
++++.+.+. ......+.++.+|+.|.+.+. .+.+.... .+.++++|+.|+++.|.+.
T Consensus 84 L~Ls~n~l~--~~~~~~~~~l~~L~~L~L~~n----~l~~~~~~~~~~~~l~~L~~L~L~~n~l~--------------- 142 (455)
T 3v47_A 84 LKLDYNQFL--QLETGAFNGLANLEVLTLTQC----NLDGAVLSGNFFKPLTSLEMLVLRDNNIK--------------- 142 (455)
T ss_dssp EECTTCTTC--EECTTTTTTCTTCCEEECTTS----CCBTHHHHSSTTTTCTTCCEEECCSSBCC---------------
T ss_pred EeCCCCccC--ccChhhccCcccCCEEeCCCC----CCCccccCcccccCcccCCEEECCCCccC---------------
Confidence 998877531 223445677888888888763 22222222 3788999999999988752
Q ss_pred HHHHhhcCCCCCCCC--CCCcc-cceEeccCCcCceee-CcccCCC-----CCCCCCCCCCCCCCC---------ccccC
Q 047321 615 QLLEALQPPLSHLPP--LGKLP-LKKLELRDLESVKRV-GNEFLGI-----EESSEDDPSSSSSSP---------SVIAF 676 (807)
Q Consensus 615 ~~l~~l~p~~~~lp~--l~~L~-L~~L~L~~~~~l~~i-~~~~~~~-----~~l~~~~~~~~~~~~---------~~~~l 676 (807)
...|. ++.++ |++|+++++. +..+ +..+... ..+.+.++.....++ ....+
T Consensus 143 ----------~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~ 211 (455)
T 3v47_A 143 ----------KIQPASFFLNMRRFHVLDLTFNK-VKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKN 211 (455)
T ss_dssp ----------SCCCCGGGGGCTTCCEEECTTCC-BSCCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTT
T ss_pred ----------ccCcccccCCCCcccEEeCCCCc-ccccChhhhhccccccccccccccCcccccchhhcccccccccccc
Confidence 12232 56778 8888888754 3332 2222111 111111111111110 01123
Q ss_pred cccccccccCCC--------------------------------------------------------------ccccch
Q 047321 677 PKLKSLEIDGMK--------------------------------------------------------------ELEEWN 694 (807)
Q Consensus 677 ~~L~~L~l~~~~--------------------------------------------------------------~l~~~~ 694 (807)
++|+.|+++++. .+....
T Consensus 212 ~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~ 291 (455)
T 3v47_A 212 TSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALL 291 (455)
T ss_dssp CEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEEC
T ss_pred ceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccchhhhccCcccccccccccCceEEEecCccccccc
Confidence 444444444431 121111
Q ss_pred hhhccccCCCCCCcccEEEEccCCCCCCC-cccccCCCCccEEeeccCcccccc-cccccccCCCCCCCCeeeeccCCCc
Q 047321 695 YRITRKENISIMPRLSSLQIMNCRKLKAL-PDYLLQTIALQKLSIYSCDLLEEL-PILEDRRTTDIPRLSSLAIWYCPKL 772 (807)
Q Consensus 695 ~~~~~~~~~~~l~~L~~L~l~~c~~L~~l-p~~l~~l~~L~~L~l~~c~~l~~l-P~~~~~~~~~l~~L~~L~i~~c~~l 772 (807)
+..+..+++|+.|++++| .+..+ |..+..+++|++|++++|. +..+ | ..+..+++|+.|++++|...
T Consensus 292 -----~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~----~~~~~l~~L~~L~Ls~N~l~ 360 (455)
T 3v47_A 292 -----KSVFSHFTDLEQLTLAQN-EINKIDDNAFWGLTHLLKLNLSQNF-LGSIDS----RMFENLDKLEVLDLSYNHIR 360 (455)
T ss_dssp -----TTTTTTCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEECCSSC-CCEECG----GGGTTCTTCCEEECCSSCCC
T ss_pred -----hhhcccCCCCCEEECCCC-cccccChhHhcCcccCCEEECCCCc-cCCcCh----hHhcCcccCCEEECCCCccc
Confidence 123566788888888888 45554 5577888889999998864 5555 4 56778899999999987544
Q ss_pred ccCCccCCCCCcccccccccchhhh
Q 047321 773 KVLPDYLLRTTTLQAGEQDYENEKF 797 (807)
Q Consensus 773 ~~lP~~l~~l~~L~~L~l~~~~~~~ 797 (807)
...|..+..+++|+.|++++|++..
T Consensus 361 ~~~~~~~~~l~~L~~L~L~~N~l~~ 385 (455)
T 3v47_A 361 ALGDQSFLGLPNLKELALDTNQLKS 385 (455)
T ss_dssp EECTTTTTTCTTCCEEECCSSCCSC
T ss_pred ccChhhccccccccEEECCCCcccc
Confidence 4447888899999999999998764
No 35
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.66 E-value=1.6e-15 Score=174.37 Aligned_cols=237 Identities=21% Similarity=0.152 Sum_probs=146.7
Q ss_pred CcceEEEEEeeccCCCCccccCCCCceeEEEeCCCCCCCCCCCCccccccccCcccceeeeccc-cCCccCeeEecCccC
Q 047321 466 GDKVRHLGLKFEEGASFPMSIHGLNRLRTLLIYDQSPYNPSLSSSILPELFNKLACLRALVIRQ-SLRTLEKFVVGGGVD 544 (807)
Q Consensus 466 ~~~~r~L~l~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~l~~~i~~LP~~i~~L~~L~~LdL~~-~L~~L~~l~~~~~~~ 544 (807)
+.++++|++++|.++.+|. .+++|++|++++| .+..+|. .+++|++|+|+. ++..++
T Consensus 60 ~~~L~~L~L~~N~l~~lp~---~l~~L~~L~Ls~N-------~l~~lp~---~l~~L~~L~Ls~N~l~~l~--------- 117 (622)
T 3g06_A 60 PAHITTLVIPDNNLTSLPA---LPPELRTLEVSGN-------QLTSLPV---LPPGLLELSIFSNPLTHLP--------- 117 (622)
T ss_dssp CTTCSEEEECSCCCSCCCC---CCTTCCEEEECSC-------CCSCCCC---CCTTCCEEEECSCCCCCCC---------
T ss_pred CCCCcEEEecCCCCCCCCC---cCCCCCEEEcCCC-------cCCcCCC---CCCCCCEEECcCCcCCCCC---------
Confidence 3567777777777666655 4567777777776 5666665 566677777661 111111
Q ss_pred CCccccccccccccccCcccccC--CCCCCChhHHHHhhccCCCCCCeEEEEeeccCCCcchhhhhchhhHHHHHHhhcC
Q 047321 545 GSNTCRLESLKNLQLLRECGIEG--LGNVSHLDEAERLQLYNQQNLLRLRLRFGRVVDGEDEERRRKNEKDKQLLEALQP 622 (807)
Q Consensus 545 ~~~~~~i~~L~~L~~L~~L~i~~--l~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~l~p 622 (807)
. .+.+|+.|.+.+ +..++. .+++|+.|+++.|.+
T Consensus 118 ----~------~l~~L~~L~L~~N~l~~lp~----------~l~~L~~L~Ls~N~l------------------------ 153 (622)
T 3g06_A 118 ----A------LPSGLCKLWIFGNQLTSLPV----------LPPGLQELSVSDNQL------------------------ 153 (622)
T ss_dssp ----C------CCTTCCEEECCSSCCSCCCC----------CCTTCCEEECCSSCC------------------------
T ss_pred ----C------CCCCcCEEECCCCCCCcCCC----------CCCCCCEEECcCCcC------------------------
Confidence 1 122233333322 111111 125566666665553
Q ss_pred CCCCCCCCCCcc-cceEeccCCcCceeeCcccCCCCCCCCCCCCCCCCCCccccCcccccccccCCCccccchhhhcccc
Q 047321 623 PLSHLPPLGKLP-LKKLELRDLESVKRVGNEFLGIEESSEDDPSSSSSSPSVIAFPKLKSLEIDGMKELEEWNYRITRKE 701 (807)
Q Consensus 623 ~~~~lp~l~~L~-L~~L~L~~~~~l~~i~~~~~~~~~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~ 701 (807)
..+|. .++ |+.|+++++ .++.++..+..+..|.+.++.....+. .+++|+.|.++++ .+..++.
T Consensus 154 --~~l~~--~~~~L~~L~L~~N-~l~~l~~~~~~L~~L~Ls~N~l~~l~~---~~~~L~~L~L~~N-~l~~l~~------ 218 (622)
T 3g06_A 154 --ASLPA--LPSELCKLWAYNN-QLTSLPMLPSGLQELSVSDNQLASLPT---LPSELYKLWAYNN-RLTSLPA------ 218 (622)
T ss_dssp --SCCCC--CCTTCCEEECCSS-CCSCCCCCCTTCCEEECCSSCCSCCCC---CCTTCCEEECCSS-CCSSCCC------
T ss_pred --CCcCC--ccCCCCEEECCCC-CCCCCcccCCCCcEEECCCCCCCCCCC---ccchhhEEECcCC-cccccCC------
Confidence 22222 123 555555542 234444222233333333333333222 4578899999885 5665553
Q ss_pred CCCCCCcccEEEEccCCCCCCCcccccCCCCccEEeeccCcccccccccccccCCCCCCCCeeeeccCCCcccCCccCCC
Q 047321 702 NISIMPRLSSLQIMNCRKLKALPDYLLQTIALQKLSIYSCDLLEELPILEDRRTTDIPRLSSLAIWYCPKLKVLPDYLLR 781 (807)
Q Consensus 702 ~~~~l~~L~~L~l~~c~~L~~lp~~l~~l~~L~~L~l~~c~~l~~lP~~~~~~~~~l~~L~~L~i~~c~~l~~lP~~l~~ 781 (807)
.+++|+.|++++| +++.+| ..+++|+.|++++| .+..+| . .+++|+.|++++| .++.+|..+.+
T Consensus 219 ---~~~~L~~L~Ls~N-~L~~lp---~~l~~L~~L~Ls~N-~L~~lp----~---~~~~L~~L~Ls~N-~L~~lp~~l~~ 282 (622)
T 3g06_A 219 ---LPSGLKELIVSGN-RLTSLP---VLPSELKELMVSGN-RLTSLP----M---LPSGLLSLSVYRN-QLTRLPESLIH 282 (622)
T ss_dssp ---CCTTCCEEECCSS-CCSCCC---CCCTTCCEEECCSS-CCSCCC----C---CCTTCCEEECCSS-CCCSCCGGGGG
T ss_pred ---CCCCCCEEEccCC-ccCcCC---CCCCcCcEEECCCC-CCCcCC----c---ccccCcEEeCCCC-CCCcCCHHHhh
Confidence 4689999999998 888888 45689999999996 688898 3 6789999999986 67899999999
Q ss_pred CCcccccccccchhhhhh
Q 047321 782 TTTLQAGEQDYENEKFSQ 799 (807)
Q Consensus 782 l~~L~~L~l~~~~~~~~~ 799 (807)
+++|+.|++++|++....
T Consensus 283 l~~L~~L~L~~N~l~~~~ 300 (622)
T 3g06_A 283 LSSETTVNLEGNPLSERT 300 (622)
T ss_dssp SCTTCEEECCSCCCCHHH
T ss_pred ccccCEEEecCCCCCCcC
Confidence 999999999999987544
No 36
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.66 E-value=1e-15 Score=184.76 Aligned_cols=123 Identities=19% Similarity=0.117 Sum_probs=91.8
Q ss_pred CCcceEEEEEeeccCCC-CccccCCCCceeEEEeCCCCCCCCCCCCccc-cccccCcccceeeecc------------cc
Q 047321 465 FGDKVRHLGLKFEEGAS-FPMSIHGLNRLRTLLIYDQSPYNPSLSSSIL-PELFNKLACLRALVIR------------QS 530 (807)
Q Consensus 465 ~~~~~r~L~l~~~~~~~-~~~~~~~l~~Lr~L~l~~~~~~~l~~~i~~L-P~~i~~L~~L~~LdL~------------~~ 530 (807)
.+..+++|++++|.++. .|..|.++++||+|++++|. .+..+ |..+++|++|++|+|+ .+
T Consensus 22 lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~------~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~ 95 (844)
T 3j0a_A 22 VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQY------TPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQG 95 (844)
T ss_dssp SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTC------CCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCS
T ss_pred CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCC------CccccCHHHhcCCCCCCEEECCCCcCcccCHhHccC
Confidence 47899999999999877 47789999999999999974 45667 7889999999999998 67
Q ss_pred CCccCeeEecCccCCCccccccc--cccccccCcccccCCCCCCChhHHHHhhccCCCCCCeEEEEeecc
Q 047321 531 LRTLEKFVVGGGVDGSNTCRLES--LKNLQLLRECGIEGLGNVSHLDEAERLQLYNQQNLLRLRLRFGRV 598 (807)
Q Consensus 531 L~~L~~l~~~~~~~~~~~~~i~~--L~~L~~L~~L~i~~l~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~ 598 (807)
+.+|+.++++.+.... ..+.. +.+|.+|+.|.+++..- .... ....+.++++|+.|+|+.|.+
T Consensus 96 l~~L~~L~Ls~n~l~~--~~~~~~~~~~L~~L~~L~Ls~N~l-~~~~--~~~~~~~L~~L~~L~Ls~N~i 160 (844)
T 3j0a_A 96 LFHLFELRLYFCGLSD--AVLKDGYFRNLKALTRLDLSKNQI-RSLY--LHPSFGKLNSLKSIDFSSNQI 160 (844)
T ss_dssp CSSCCCEECTTCCCSS--CCSTTCCCSSCSSCCEEEEESCCC-CCCC--CCGGGGTCSSCCEEEEESSCC
T ss_pred CcccCEeeCcCCCCCc--ccccCccccccCCCCEEECCCCcc-cccc--cchhHhhCCCCCEEECCCCcC
Confidence 8888888888775321 11222 66777888877765221 1100 112578899999999998875
No 37
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.66 E-value=2e-16 Score=181.93 Aligned_cols=65 Identities=28% Similarity=0.163 Sum_probs=40.0
Q ss_pred CCCCccEEeeccCcccccccccccccCCCCCCCCeeeeccCCCcccCC-ccCCCCCcccccccccchhhhhhh
Q 047321 729 QTIALQKLSIYSCDLLEELPILEDRRTTDIPRLSSLAIWYCPKLKVLP-DYLLRTTTLQAGEQDYENEKFSQR 800 (807)
Q Consensus 729 ~l~~L~~L~l~~c~~l~~lP~~~~~~~~~l~~L~~L~i~~c~~l~~lP-~~l~~l~~L~~L~l~~~~~~~~~~ 800 (807)
.+++|++|++++| .+..+| . ...+++|+.|++++|. ++.+| ..+.++++|+.|++++|++....+
T Consensus 449 ~l~~L~~L~Ls~N-~l~~ip----~-~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 514 (549)
T 2z81_A 449 FLPRLQELYISRN-KLKTLP----D-ASLFPVLLVMKISRNQ-LKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 514 (549)
T ss_dssp CCTTCCEEECCSS-CCSSCC----C-GGGCTTCCEEECCSSC-CCCCCTTGGGGCTTCCEEECCSSCBCCCHH
T ss_pred cCChhcEEECCCC-ccCcCC----C-cccCccCCEEecCCCc-cCCcCHHHHhcCcccCEEEecCCCccCCCc
Confidence 3555666666554 455555 2 2456677777777653 44443 457777888888888877765544
No 38
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=99.66 E-value=7e-15 Score=162.45 Aligned_cols=301 Identities=12% Similarity=-0.009 Sum_probs=182.1
Q ss_pred CCccccccchHHHHHHHH-hCCCCCCCCCceEEEE--EccCCChHHHHHHHHHcCcccc---cccc-eEEEEEeCCCCCH
Q 047321 103 EGGVCGRVDEKNELLSKL-LCGSSEQQKGLDVISL--VGLGGIGKTTLAQLAYNNDEVK---RNFE-KVIWVCVSNTFEE 175 (807)
Q Consensus 103 ~~~~vGR~~~~~~l~~~L-~~~~~~~~~~~~vi~I--~G~gGiGKTtLa~~v~~~~~~~---~~f~-~~~wv~~~~~~~~ 175 (807)
+..++||+++++++.+.+ .....+.....+.+.| +|++|+||||||+.+++..... ..+. .++|+.+....+.
T Consensus 21 p~~l~gR~~el~~l~~~l~~~~~~~~~~~~~~~li~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (412)
T 1w5s_A 21 PPELRVRRGEAEALARIYLNRLLSGAGLSDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYVNAFNAPNL 100 (412)
T ss_dssp CSSCSSSCHHHHHHHHHHHHHHHTSSCBCCEEEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEEEEGGGCCSH
T ss_pred CCCCCChHHHHHHHHHHHhHHHhcCCCCCCCEEEEeCcCcCCCCHHHHHHHHHHHHHHHHhccCCceeEEEEECCCCCCH
Confidence 467999999999999988 4211100023456777 9999999999999998742211 0122 3568887777788
Q ss_pred HHHHHHHHHHcCCCCCC-CccHHHHHHHHHHHHh--CCceEEEEeCCCCCC------ccChHHHHHhhcCC---C--CCc
Q 047321 176 ISVAKAIIEGLGVSAFG-LSEFESLMKQIQEYIT--GKKIFLVLDDVWDGD------YKKWDPFFSCLKNG---H--HES 241 (807)
Q Consensus 176 ~~~~~~i~~~l~~~~~~-~~~~~~~~~~l~~~l~--~k~~LlVlDdv~~~~------~~~~~~l~~~l~~~---~--~gs 241 (807)
..++..++..++..... ..+...+...+.+.+. +++++||+||++.-+ ...+..+...+... . ...
T Consensus 101 ~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~llvlDe~~~l~~~~~~~~~~l~~l~~~~~~~~~~~~~~~v 180 (412)
T 1w5s_A 101 YTILSLIVRQTGYPIQVRGAPALDILKALVDNLYVENHYLLVILDEFQSMLSSPRIAAEDLYTLLRVHEEIPSRDGVNRI 180 (412)
T ss_dssp HHHHHHHHHHHTCCCCCTTCCHHHHHHHHHHHHHHHTCEEEEEEESTHHHHSCTTSCHHHHHHHHTHHHHSCCTTSCCBE
T ss_pred HHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEEeCHHHHhhccCcchHHHHHHHHHHHhcccCCCCceE
Confidence 89999999988764321 2334556666666664 789999999996531 12233333333322 2 344
Q ss_pred EEEEEcCCHHHHHHh--------CC-CceEeCCCCChhhHHHHHHHHHhccCCccCccchHHHHHHHHHHcC------CC
Q 047321 242 KILITTHDRSVALQL--------GS-IDIIPVKELGEGECWLLFKQIAFLRRSFEDCEKLEPIGRKIASKCK------GL 306 (807)
Q Consensus 242 ~IliTTR~~~v~~~~--------~~-~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~~~~I~~~c~------gl 306 (807)
.||+||+...+...+ .. ...+.+++++.++++++|...+...... ..--.+.+..|++.++ |.
T Consensus 181 ~lI~~~~~~~~~~~l~~~~~~~~~~~~~~i~l~~l~~~e~~~ll~~~~~~~~~~--~~~~~~~~~~i~~~~~~~~~~~G~ 258 (412)
T 1w5s_A 181 GFLLVASDVRALSYMREKIPQVESQIGFKLHLPAYKSRELYTILEQRAELGLRD--TVWEPRHLELISDVYGEDKGGDGS 258 (412)
T ss_dssp EEEEEEEETHHHHHHHHHCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHHBCT--TSCCHHHHHHHHHHHCGGGTSCCC
T ss_pred EEEEEeccccHHHHHhhhcchhhhhcCCeeeeCCCCHHHHHHHHHHHHHhcCCC--CCCChHHHHHHHHHHHHhccCCCc
Confidence 578788765543211 11 2249999999999999998764321110 1112456788999999 99
Q ss_pred HHHHHHHHHHh---h--cC---CCHHHHHHHHhccccccccCCCCchhhHHhcccCCCCccchhhhhhhhccCC--Ccce
Q 047321 307 PLAAKVIGNLL---R--SK---NTAKEWHIILDSEMWKVQEIGQGILAPLLLSYNDLPSNSMVKRCFSYCAVFP--KDYN 376 (807)
Q Consensus 307 PLai~~~~~~l---~--~~---~~~~~w~~~~~~~~~~~~~~~~~i~~~l~lsy~~L~~~~~~k~cfl~~s~fp--~~~~ 376 (807)
|..+..++... . .. -+.+.+..+...... ...+.-++..||. +.+.++..++.+. .+..
T Consensus 259 p~~~~~l~~~a~~~a~~~~~~~i~~~~v~~~~~~~~~---------~~~~~~~l~~l~~--~~~~~l~aia~l~~~~~~~ 327 (412)
T 1w5s_A 259 ARRAIVALKMACEMAEAMGRDSLSEDLVRKAVSENEA---------ASIQTHELEALSI--HELIILRLIAEATLGGMEW 327 (412)
T ss_dssp HHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHC---------------CCSSSSSCH--HHHHHHHHHHHHHHTTCSS
T ss_pred HHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhc---------cchHHHHHHcCCH--HHHHHHHHHHHHHhcCCCC
Confidence 97665544321 1 11 133444444332110 2234456788998 8899888888653 2234
Q ss_pred echhHHHHHHH--h---cCCCCCCCCchHHHHHHHHHHHHhhcCCcceec
Q 047321 377 MNKRELINLWM--T---QGYLNADEDEEMEMIGEEYFNILATRSFFQEFQ 421 (807)
Q Consensus 377 i~~~~li~~W~--a---eg~i~~~~~~~~e~~~~~~~~~L~~rsll~~~~ 421 (807)
+....+...+. + .|. . .........+++.|...++|....
T Consensus 328 ~~~~~~~~~~~~~~~~~~~~-~----~~~~~~~~~~l~~L~~~gli~~~~ 372 (412)
T 1w5s_A 328 INAGLLRQRYEDASLTMYNV-K----PRGYTQYHIYLKHLTSLGLVDAKP 372 (412)
T ss_dssp BCHHHHHHHHHHHHHHHSCC-C----CCCHHHHHHHHHHHHHTTSEEEEC
T ss_pred ccHHHHHHHHHHHHHhhcCC-C----CCCHHHHHHHHHHHHhCCCEEeec
Confidence 55555544432 2 121 0 111234567899999999998754
No 39
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.66 E-value=8.1e-16 Score=171.65 Aligned_cols=261 Identities=13% Similarity=0.089 Sum_probs=175.2
Q ss_pred CcceEEEEEeeccCCCCccccCCCCceeEEEeCCCCCCCCCCCCccccccccCcccceeeecc---------ccCCccCe
Q 047321 466 GDKVRHLGLKFEEGASFPMSIHGLNRLRTLLIYDQSPYNPSLSSSILPELFNKLACLRALVIR---------QSLRTLEK 536 (807)
Q Consensus 466 ~~~~r~L~l~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~l~~~i~~LP~~i~~L~~L~~LdL~---------~~L~~L~~ 536 (807)
..++++|+++++.+..+| .+..+++|++|++++| .+..+| ++.+++|++|+++ .++.+|+.
T Consensus 41 l~~L~~L~Ls~n~l~~~~-~l~~l~~L~~L~Ls~n-------~l~~~~--~~~l~~L~~L~Ls~N~l~~~~~~~l~~L~~ 110 (457)
T 3bz5_A 41 LATLTSLDCHNSSITDMT-GIEKLTGLTKLICTSN-------NITTLD--LSQNTNLTYLACDSNKLTNLDVTPLTKLTY 110 (457)
T ss_dssp HTTCCEEECCSSCCCCCT-TGGGCTTCSEEECCSS-------CCSCCC--CTTCTTCSEEECCSSCCSCCCCTTCTTCCE
T ss_pred cCCCCEEEccCCCcccCh-hhcccCCCCEEEccCC-------cCCeEc--cccCCCCCEEECcCCCCceeecCCCCcCCE
Confidence 467999999999998776 7899999999999998 788887 9999999999998 45667777
Q ss_pred eEecCccCCCccccccccccccccCcccccCCCCCCChhHHHHhhccCCCCCCeEEEEeeccCCCcchhhhhchhhHHHH
Q 047321 537 FVVGGGVDGSNTCRLESLKNLQLLRECGIEGLGNVSHLDEAERLQLYNQQNLLRLRLRFGRVVDGEDEERRRKNEKDKQL 616 (807)
Q Consensus 537 l~~~~~~~~~~~~~i~~L~~L~~L~~L~i~~l~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~ 616 (807)
++++.+.+.. + .+..+.+|+.|.+.+. .+... .+.++++|+.|+++.|...
T Consensus 111 L~L~~N~l~~----l-~~~~l~~L~~L~l~~N-~l~~l------~l~~l~~L~~L~l~~n~~~----------------- 161 (457)
T 3bz5_A 111 LNCDTNKLTK----L-DVSQNPLLTYLNCARN-TLTEI------DVSHNTQLTELDCHLNKKI----------------- 161 (457)
T ss_dssp EECCSSCCSC----C-CCTTCTTCCEEECTTS-CCSCC------CCTTCTTCCEEECTTCSCC-----------------
T ss_pred EECCCCcCCe----e-cCCCCCcCCEEECCCC-cccee------ccccCCcCCEEECCCCCcc-----------------
Confidence 7777765322 2 2566666776666542 11211 3667788888888777410
Q ss_pred HHhhcCCCCCCCCCCCcc-cceEeccCCcCceeeCcccCCCCCC---CCCCCCCCCCCCccccCcccccccccCCCcccc
Q 047321 617 LEALQPPLSHLPPLGKLP-LKKLELRDLESVKRVGNEFLGIEES---SEDDPSSSSSSPSVIAFPKLKSLEIDGMKELEE 692 (807)
Q Consensus 617 l~~l~p~~~~lp~l~~L~-L~~L~L~~~~~l~~i~~~~~~~~~l---~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~ 692 (807)
..+ .++.++ |+.|+++++. ++.++ +.....| .+.++..... .+..+++|+.|+++++ .+..
T Consensus 162 --------~~~-~~~~l~~L~~L~ls~n~-l~~l~--l~~l~~L~~L~l~~N~l~~~--~l~~l~~L~~L~Ls~N-~l~~ 226 (457)
T 3bz5_A 162 --------TKL-DVTPQTQLTTLDCSFNK-ITELD--VSQNKLLNRLNCDTNNITKL--DLNQNIQLTFLDCSSN-KLTE 226 (457)
T ss_dssp --------CCC-CCTTCTTCCEEECCSSC-CCCCC--CTTCTTCCEEECCSSCCSCC--CCTTCTTCSEEECCSS-CCSC
T ss_pred --------ccc-ccccCCcCCEEECCCCc-cceec--cccCCCCCEEECcCCcCCee--ccccCCCCCEEECcCC-cccc
Confidence 223 366778 8999988753 55554 2222222 2333333332 2557788888888774 4555
Q ss_pred chhhhccccCCCCCCcccEEEEccCCCCCCCcccccCCCCc----------cEEeeccCcccccccccccccCCCCCCCC
Q 047321 693 WNYRITRKENISIMPRLSSLQIMNCRKLKALPDYLLQTIAL----------QKLSIYSCDLLEELPILEDRRTTDIPRLS 762 (807)
Q Consensus 693 ~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~lp~~l~~l~~L----------~~L~l~~c~~l~~lP~~~~~~~~~l~~L~ 762 (807)
++ +..+++|+.|++++| .++.+| +..+++| +.|++++|..++.+| ...+++|+
T Consensus 227 ip--------~~~l~~L~~L~l~~N-~l~~~~--~~~l~~L~~L~l~~n~L~~L~l~~n~~~~~~~------~~~l~~L~ 289 (457)
T 3bz5_A 227 ID--------VTPLTQLTYFDCSVN-PLTELD--VSTLSKLTTLHCIQTDLLEIDLTHNTQLIYFQ------AEGCRKIK 289 (457)
T ss_dssp CC--------CTTCTTCSEEECCSS-CCSCCC--CTTCTTCCEEECTTCCCSCCCCTTCTTCCEEE------CTTCTTCC
T ss_pred cC--------ccccCCCCEEEeeCC-cCCCcC--HHHCCCCCEEeccCCCCCEEECCCCccCCccc------ccccccCC
Confidence 43 346788888888887 666665 2334444 445555555555554 35678899
Q ss_pred eeeeccCCCcccCCc--------cCCCCCcccccccccchhhh
Q 047321 763 SLAIWYCPKLKVLPD--------YLLRTTTLQAGEQDYENEKF 797 (807)
Q Consensus 763 ~L~i~~c~~l~~lP~--------~l~~l~~L~~L~l~~~~~~~ 797 (807)
.|++++|+.++.+|. .+.++++|+.|++++|++..
T Consensus 290 ~L~Ls~n~~l~~l~~~~~~L~~L~l~~~~~L~~L~L~~N~l~~ 332 (457)
T 3bz5_A 290 ELDVTHNTQLYLLDCQAAGITELDLSQNPKLVYLYLNNTELTE 332 (457)
T ss_dssp CCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEECTTCCCSC
T ss_pred EEECCCCcccceeccCCCcceEechhhcccCCEEECCCCcccc
Confidence 999998887776663 24566788888888887765
No 40
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.65 E-value=6.2e-16 Score=178.67 Aligned_cols=93 Identities=22% Similarity=0.193 Sum_probs=63.2
Q ss_pred CCCCCcccEEEEccCCCC-CCCcccccCCCCccEEeeccCcccccccccccccCCCCCCCCeeeeccCCCcccCC-ccCC
Q 047321 703 ISIMPRLSSLQIMNCRKL-KALPDYLLQTIALQKLSIYSCDLLEELPILEDRRTTDIPRLSSLAIWYCPKLKVLP-DYLL 780 (807)
Q Consensus 703 ~~~l~~L~~L~l~~c~~L-~~lp~~l~~l~~L~~L~l~~c~~l~~lP~~~~~~~~~l~~L~~L~i~~c~~l~~lP-~~l~ 780 (807)
+..+++|+.|++++|.-. ..+|..+..+++|++|++++|......| ..+..+++|+.|++++|. ++.+| ..+.
T Consensus 441 ~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~----~~~~~l~~L~~L~l~~n~-l~~~~~~~~~ 515 (570)
T 2z63_A 441 FNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSP----TAFNSLSSLQVLNMASNQ-LKSVPDGIFD 515 (570)
T ss_dssp TTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECT----TTTTTCTTCCEEECCSSC-CSCCCTTTTT
T ss_pred hhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCCh----hhhhcccCCCEEeCCCCc-CCCCCHHHhh
Confidence 445667777777776322 2466677777777777777764333335 566778888888888764 55554 5678
Q ss_pred CCCcccccccccchhhhhhh
Q 047321 781 RTTTLQAGEQDYENEKFSQR 800 (807)
Q Consensus 781 ~l~~L~~L~l~~~~~~~~~~ 800 (807)
++++|+.|++++|++....+
T Consensus 516 ~l~~L~~L~l~~N~~~~~~~ 535 (570)
T 2z63_A 516 RLTSLQKIWLHTNPWDCSCP 535 (570)
T ss_dssp TCTTCCEEECCSSCBCCCTT
T ss_pred cccCCcEEEecCCcccCCCc
Confidence 88888888888888765544
No 41
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=99.65 E-value=6.5e-15 Score=158.81 Aligned_cols=294 Identities=12% Similarity=0.084 Sum_probs=177.3
Q ss_pred ccCCccccccchHHHHHHHHhCCCCCCCCCceEEEEEccCCChHHHHHHHHHcCcccccccceEEEEEeCCCC------C
Q 047321 101 IDEGGVCGRVDEKNELLSKLLCGSSEQQKGLDVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSNTF------E 174 (807)
Q Consensus 101 ~~~~~~vGR~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~------~ 174 (807)
..+..|+||++++++|.+++.. + +++.|+|+.|+|||||++.+++. . . .+|+++.... +
T Consensus 9 ~~~~~~~gR~~el~~L~~~l~~-------~-~~v~i~G~~G~GKT~Ll~~~~~~--~----~-~~~~~~~~~~~~~~~~~ 73 (350)
T 2qen_A 9 TRREDIFDREEESRKLEESLEN-------Y-PLTLLLGIRRVGKSSLLRAFLNE--R----P-GILIDCRELYAERGHIT 73 (350)
T ss_dssp CSGGGSCSCHHHHHHHHHHHHH-------C-SEEEEECCTTSSHHHHHHHHHHH--S----S-EEEEEHHHHHHTTTCBC
T ss_pred CChHhcCChHHHHHHHHHHHhc-------C-CeEEEECCCcCCHHHHHHHHHHH--c----C-cEEEEeecccccccCCC
Confidence 3456799999999999998862 2 69999999999999999999873 2 1 6677764432 5
Q ss_pred HHHHHHHHHHHcCC----------------CCC--CCccHHHHHHHHHHHHhC-CceEEEEeCCCCCCc-------cChH
Q 047321 175 EISVAKAIIEGLGV----------------SAF--GLSEFESLMKQIQEYITG-KKIFLVLDDVWDGDY-------KKWD 228 (807)
Q Consensus 175 ~~~~~~~i~~~l~~----------------~~~--~~~~~~~~~~~l~~~l~~-k~~LlVlDdv~~~~~-------~~~~ 228 (807)
...++..+...+.. ... .......+...+.+.... ++.+||+||++.-+. ..+.
T Consensus 74 ~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vlvlDe~~~~~~~~~~~~~~~~~ 153 (350)
T 2qen_A 74 REELIKELQSTISPFQKFQSKFKISLNLKFLTLEPRKLSLREVFRELNDLGEELGEFIVAFDEAQYLRFYGSRGGKELLA 153 (350)
T ss_dssp HHHHHHHHHHHSCSHHHHHHHHTCCCCCGGGTSCGGGCCHHHHHHHHHHHHHHHSCEEEEEETGGGGGGBTTTTTHHHHH
T ss_pred HHHHHHHHHHHHHHHHhHhhhceeEEEecceeeccccchHHHHHHHHHHHHhccCCEEEEEeCHHHHhccCccchhhHHH
Confidence 55666666655432 000 113455566666665543 399999999965321 1122
Q ss_pred HHHHhhcCCCCCcEEEEEcCCHHHHHHh-----------CC-CceEeCCCCChhhHHHHHHHHHhccCCccCccchHHHH
Q 047321 229 PFFSCLKNGHHESKILITTHDRSVALQL-----------GS-IDIIPVKELGEGECWLLFKQIAFLRRSFEDCEKLEPIG 296 (807)
Q Consensus 229 ~l~~~l~~~~~gs~IliTTR~~~v~~~~-----------~~-~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~~ 296 (807)
.+...... .++.++|+|++...+...+ +. ...+++.+|+.+|+.+++....-..+. . .-.+.+
T Consensus 154 ~L~~~~~~-~~~~~~il~g~~~~~l~~~l~~~~~~~~l~~~~~~~i~l~pl~~~e~~~~l~~~~~~~~~-~---~~~~~~ 228 (350)
T 2qen_A 154 LFAYAYDS-LPNLKIILTGSEVGLLHDFLKITDYESPLYGRIAGEVLVKPFDKDTSVEFLKRGFREVNL-D---VPENEI 228 (350)
T ss_dssp HHHHHHHH-CTTEEEEEEESSHHHHHHHHCTTCTTSTTTTCCCEEEECCCCCHHHHHHHHHHHHHTTTC-C---CCHHHH
T ss_pred HHHHHHHh-cCCeEEEEECCcHHHHHHHHhhcCCCCccccCccceeeCCCCCHHHHHHHHHHHHHHcCC-C---CCHHHH
Confidence 23222222 2567899999886542221 11 237899999999999999875422111 1 123567
Q ss_pred HHHHHHcCCCHHHHHHHHHHhhcCCCHHHHHH-HHhccccccccCCCCchh-hHHhcccCCCCccchhhhhhhhccCCCc
Q 047321 297 RKIASKCKGLPLAAKVIGNLLRSKNTAKEWHI-ILDSEMWKVQEIGQGILA-PLLLSYNDLPSNSMVKRCFSYCAVFPKD 374 (807)
Q Consensus 297 ~~I~~~c~glPLai~~~~~~l~~~~~~~~w~~-~~~~~~~~~~~~~~~i~~-~l~lsy~~L~~~~~~k~cfl~~s~fp~~ 374 (807)
..|++.++|+|+++..++..+....+...+.. +.+..... +.. +-.+.+ + ++ ..+..+..+|. +
T Consensus 229 ~~i~~~tgG~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~l~~l~~-~-~~--~~~~~l~~la~---g 294 (350)
T 2qen_A 229 EEAVELLDGIPGWLVVFGVEYLRNGDFGRAMKRTLEVAKGL-------IMGELEELRR-R-SP--RYVDILRAIAL---G 294 (350)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-------HHHHHHHHHH-H-CH--HHHHHHHHHHT---T
T ss_pred HHHHHHhCCCHHHHHHHHHHHhccccHhHHHHHHHHHHHHH-------HHHHHHHHHh-C-Ch--hHHHHHHHHHh---C
Confidence 89999999999999998876533222222211 11110000 001 111112 2 55 77888888887 2
Q ss_pred ceechhHHHHHHHhcCCCCCCCCchHHHHHHHHHHHHhhcCCcceeccCCCCCccEEEE-ChhHHHHHH
Q 047321 375 YNMNKRELINLWMTQGYLNADEDEEMEMIGEEYFNILATRSFFQEFQKNDDDDFTSCKM-HDIVNDFAQ 442 (807)
Q Consensus 375 ~~i~~~~li~~W~aeg~i~~~~~~~~e~~~~~~~~~L~~rsll~~~~~~~~~~~~~~~m-Hdlv~~~a~ 442 (807)
.++...+.....+.. - .. .......+++.|.+.++|.... + .|.+ |++++++.+
T Consensus 295 -~~~~~~l~~~~~~~~-~----~~-~~~~~~~~l~~L~~~gli~~~~----~---~y~~~~p~~~~~~~ 349 (350)
T 2qen_A 295 -YNRWSLIRDYLAVKG-T----KI-PEPRLYALLENLKKMNWIVEED----N---TYKIADPVVATVLR 349 (350)
T ss_dssp -CCSHHHHHHHHHHTT-C----CC-CHHHHHHHHHHHHHTTSEEEET----T---EEEESSHHHHHHHT
T ss_pred -CCCHHHHHHHHHHHh-C----CC-CHHHHHHHHHHHHhCCCEEecC----C---EEEEecHHHHHHHc
Confidence 134445544332211 0 01 1244678999999999997652 1 2555 778887753
No 42
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.65 E-value=2.5e-15 Score=160.82 Aligned_cols=263 Identities=17% Similarity=0.214 Sum_probs=162.8
Q ss_pred CcceEEEEEeeccCCCC-ccccCCCCceeEEEeCCCCCCCCCCCCccc-cccccCcccceeeeccc-cCCccCeeEecCc
Q 047321 466 GDKVRHLGLKFEEGASF-PMSIHGLNRLRTLLIYDQSPYNPSLSSSIL-PELFNKLACLRALVIRQ-SLRTLEKFVVGGG 542 (807)
Q Consensus 466 ~~~~r~L~l~~~~~~~~-~~~~~~l~~Lr~L~l~~~~~~~l~~~i~~L-P~~i~~L~~L~~LdL~~-~L~~L~~l~~~~~ 542 (807)
+..+++|++++|.+..+ |..+.++++|++|++++| .+..+ |..++++++|++|+++. .+..++.
T Consensus 53 ~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n-------~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~------ 119 (332)
T 2ft3_A 53 SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNN-------KISKIHEKAFSPLRKLQKLYISKNHLVEIPP------ 119 (332)
T ss_dssp CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS-------CCCEECGGGSTTCTTCCEEECCSSCCCSCCS------
T ss_pred CCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCC-------ccCccCHhHhhCcCCCCEEECCCCcCCccCc------
Confidence 46788888888887765 457888889999999887 66666 77888888999998872 2222211
Q ss_pred cCCCccccccccccccccCcccccC--CCCCCChhHHHHhhccCCCCCCeEEEEeeccCCCcchhhhhchhhHHHHHHhh
Q 047321 543 VDGSNTCRLESLKNLQLLRECGIEG--LGNVSHLDEAERLQLYNQQNLLRLRLRFGRVVDGEDEERRRKNEKDKQLLEAL 620 (807)
Q Consensus 543 ~~~~~~~~i~~L~~L~~L~~L~i~~--l~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~l 620 (807)
.+ . .+|+.|.+.+ +..+.. ..+.++++|+.|++++|.+...
T Consensus 120 -------~~---~--~~L~~L~l~~n~i~~~~~------~~~~~l~~L~~L~l~~n~l~~~------------------- 162 (332)
T 2ft3_A 120 -------NL---P--SSLVELRIHDNRIRKVPK------GVFSGLRNMNCIEMGGNPLENS------------------- 162 (332)
T ss_dssp -------SC---C--TTCCEEECCSSCCCCCCS------GGGSSCSSCCEEECCSCCCBGG-------------------
T ss_pred -------cc---c--ccCCEEECCCCccCccCH------hHhCCCccCCEEECCCCccccC-------------------
Confidence 11 0 2344444332 111111 1356667777777776653100
Q ss_pred cCCCCCCCC-CCCcccceEeccCCcCceeeCcccC-CCCCCCCCCCCCCCCC-CccccCcccccccccCCCccccchhhh
Q 047321 621 QPPLSHLPP-LGKLPLKKLELRDLESVKRVGNEFL-GIEESSEDDPSSSSSS-PSVIAFPKLKSLEIDGMKELEEWNYRI 697 (807)
Q Consensus 621 ~p~~~~lp~-l~~L~L~~L~L~~~~~l~~i~~~~~-~~~~l~~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~l~~~~~~~ 697 (807)
...|. ++.+.|++|+++++. ++.++..+. ....|.+.++.....+ ..+..+++|+.|+++++ .+..++.
T Consensus 163 ----~~~~~~~~~l~L~~L~l~~n~-l~~l~~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N-~l~~~~~-- 234 (332)
T 2ft3_A 163 ----GFEPGAFDGLKLNYLRISEAK-LTGIPKDLPETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHN-QIRMIEN-- 234 (332)
T ss_dssp ----GSCTTSSCSCCCSCCBCCSSB-CSSCCSSSCSSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSS-CCCCCCT--
T ss_pred ----CCCcccccCCccCEEECcCCC-CCccCccccCCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCC-cCCcCCh--
Confidence 00111 221126666666533 444443322 2233333333333332 34567889999999885 5555543
Q ss_pred ccccCCCCCCcccEEEEccCCCCCCCcccccCCCCccEEeeccCcccccccccccccCC------CCCCCCeeeeccCCC
Q 047321 698 TRKENISIMPRLSSLQIMNCRKLKALPDYLLQTIALQKLSIYSCDLLEELPILEDRRTT------DIPRLSSLAIWYCPK 771 (807)
Q Consensus 698 ~~~~~~~~l~~L~~L~l~~c~~L~~lp~~l~~l~~L~~L~l~~c~~l~~lP~~~~~~~~------~l~~L~~L~i~~c~~ 771 (807)
..+..+++|+.|++++| ++..+|.++..+++|+.|+++++ .+..+|. ..+. ..++|+.|++.+++.
T Consensus 235 ---~~~~~l~~L~~L~L~~N-~l~~lp~~l~~l~~L~~L~l~~N-~l~~~~~---~~~~~~~~~~~~~~l~~L~l~~N~~ 306 (332)
T 2ft3_A 235 ---GSLSFLPTLRELHLDNN-KLSRVPAGLPDLKLLQVVYLHTN-NITKVGV---NDFCPVGFGVKRAYYNGISLFNNPV 306 (332)
T ss_dssp ---TGGGGCTTCCEEECCSS-CCCBCCTTGGGCTTCCEEECCSS-CCCBCCT---TSSSCSSCCSSSCCBSEEECCSSSS
T ss_pred ---hHhhCCCCCCEEECCCC-cCeecChhhhcCccCCEEECCCC-CCCccCh---hHccccccccccccccceEeecCcc
Confidence 23557899999999988 78899988989999999999985 5777761 1222 246788999998775
Q ss_pred c--ccCCccCCCCCcccccccccch
Q 047321 772 L--KVLPDYLLRTTTLQAGEQDYEN 794 (807)
Q Consensus 772 l--~~lP~~l~~l~~L~~L~l~~~~ 794 (807)
. ...|..+..++.|+.+++++|.
T Consensus 307 ~~~~~~~~~~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 307 PYWEVQPATFRCVTDRLAIQFGNYK 331 (332)
T ss_dssp CGGGSCGGGGTTBCCSTTEEC----
T ss_pred cccccCcccccccchhhhhhccccc
Confidence 4 3456778889999999998875
No 43
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.65 E-value=2.6e-16 Score=170.02 Aligned_cols=250 Identities=16% Similarity=0.153 Sum_probs=168.4
Q ss_pred CcceEEEEEeeccCCCCcc-ccCCCCceeEEEeCCCCCCCCCCCCccc-cccccCcccceeeecccc-CCccCeeEecCc
Q 047321 466 GDKVRHLGLKFEEGASFPM-SIHGLNRLRTLLIYDQSPYNPSLSSSIL-PELFNKLACLRALVIRQS-LRTLEKFVVGGG 542 (807)
Q Consensus 466 ~~~~r~L~l~~~~~~~~~~-~~~~l~~Lr~L~l~~~~~~~l~~~i~~L-P~~i~~L~~L~~LdL~~~-L~~L~~l~~~~~ 542 (807)
+..+++|++++|.+..++. .+.++++|++|++++| .+..+ |..++++++|++|+++.+ +..++
T Consensus 51 ~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n-------~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~------- 116 (353)
T 2z80_A 51 TEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSN-------GINTIEEDSFSSLGSLEHLDLSYNYLSNLS------- 116 (353)
T ss_dssp CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTS-------CCCEECTTTTTTCTTCCEEECCSSCCSSCC-------
T ss_pred cccCcEEECCCCcCcccCHHHhccCCCCCEEECCCC-------ccCccCHhhcCCCCCCCEEECCCCcCCcCC-------
Confidence 4578888888888877554 6788888888888887 66666 456888888888888722 22211
Q ss_pred cCCCccccccccccccccCcccccC--CCCCCChhHHHHhhccCCCCCCeEEEEeec-cCCCcchhhhhchhhHHHHHHh
Q 047321 543 VDGSNTCRLESLKNLQLLRECGIEG--LGNVSHLDEAERLQLYNQQNLLRLRLRFGR-VVDGEDEERRRKNEKDKQLLEA 619 (807)
Q Consensus 543 ~~~~~~~~i~~L~~L~~L~~L~i~~--l~~~~~~~~~~~~~l~~l~~L~~L~L~~~~-~~~~~~~~~~~~~~~~~~~l~~ 619 (807)
...+..+.+|+.|.+.+ +..++. ...+.++++|+.|+++.|. +
T Consensus 117 --------~~~~~~l~~L~~L~L~~n~l~~l~~-----~~~~~~l~~L~~L~l~~n~~~--------------------- 162 (353)
T 2z80_A 117 --------SSWFKPLSSLTFLNLLGNPYKTLGE-----TSLFSHLTKLQILRVGNMDTF--------------------- 162 (353)
T ss_dssp --------HHHHTTCTTCSEEECTTCCCSSSCS-----SCSCTTCTTCCEEEEEESSSC---------------------
T ss_pred --------HhHhCCCccCCEEECCCCCCcccCc-----hhhhccCCCCcEEECCCCccc---------------------
Confidence 11144556666666654 222211 0146778899999998874 2
Q ss_pred hcCCCCCCC--CCCCcc-cceEeccCCcCceeeCcccCCCCCCCCCCCCCCCCCCccccCcccccccccCCCccccchhh
Q 047321 620 LQPPLSHLP--PLGKLP-LKKLELRDLESVKRVGNEFLGIEESSEDDPSSSSSSPSVIAFPKLKSLEIDGMKELEEWNYR 696 (807)
Q Consensus 620 l~p~~~~lp--~l~~L~-L~~L~L~~~~~l~~i~~~~~~~~~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~ 696 (807)
..++ .++.++ |++|+++++. +..+... .+..+++|+.|+++++ .+..++.
T Consensus 163 -----~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~-------------------~l~~l~~L~~L~l~~n-~l~~~~~- 215 (353)
T 2z80_A 163 -----TKIQRKDFAGLTFLEELEIDASD-LQSYEPK-------------------SLKSIQNVSHLILHMK-QHILLLE- 215 (353)
T ss_dssp -----CEECTTTTTTCCEEEEEEEEETT-CCEECTT-------------------TTTTCSEEEEEEEECS-CSTTHHH-
T ss_pred -----cccCHHHccCCCCCCEEECCCCC-cCccCHH-------------------HHhccccCCeecCCCC-ccccchh-
Confidence 2222 367788 9999998754 4443211 1347889999999885 4555553
Q ss_pred hccccCCCCCCcccEEEEccCCCCCCCcc-c---ccCCCCccEEeeccCcc----cccccccccccCCCCCCCCeeeecc
Q 047321 697 ITRKENISIMPRLSSLQIMNCRKLKALPD-Y---LLQTIALQKLSIYSCDL----LEELPILEDRRTTDIPRLSSLAIWY 768 (807)
Q Consensus 697 ~~~~~~~~~l~~L~~L~l~~c~~L~~lp~-~---l~~l~~L~~L~l~~c~~----l~~lP~~~~~~~~~l~~L~~L~i~~ 768 (807)
.....+++|+.|++++| .+..++. . ....+.++.++++++.- +..+| ..+..+++|+.|++++
T Consensus 216 ----~~~~~~~~L~~L~L~~n-~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~----~~l~~l~~L~~L~Ls~ 286 (353)
T 2z80_A 216 ----IFVDVTSSVECLELRDT-DLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVM----KLLNQISGLLELEFSR 286 (353)
T ss_dssp ----HHHHHTTTEEEEEEESC-BCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHH----HHHHTCTTCCEEECCS
T ss_pred ----hhhhhcccccEEECCCC-ccccccccccccccccchhhccccccccccCcchhhhH----HHHhcccCCCEEECCC
Confidence 11234789999999988 5655442 1 23456778888877542 22456 5677899999999998
Q ss_pred CCCcccCCccC-CCCCcccccccccchhhhhhh
Q 047321 769 CPKLKVLPDYL-LRTTTLQAGEQDYENEKFSQR 800 (807)
Q Consensus 769 c~~l~~lP~~l-~~l~~L~~L~l~~~~~~~~~~ 800 (807)
| .++.+|..+ .++++|+.|++++|++....+
T Consensus 287 N-~l~~i~~~~~~~l~~L~~L~L~~N~~~~~~~ 318 (353)
T 2z80_A 287 N-QLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 318 (353)
T ss_dssp S-CCCCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred C-CCCccCHHHHhcCCCCCEEEeeCCCccCcCC
Confidence 5 678999774 899999999999999876654
No 44
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.64 E-value=7.1e-16 Score=163.08 Aligned_cols=251 Identities=17% Similarity=0.137 Sum_probs=158.0
Q ss_pred EEEEeeccCCCCccccCCCCceeEEEeCCCCCCCCCCCCcccccc-ccCcccceeeeccccCCccCeeEecCccCCCccc
Q 047321 471 HLGLKFEEGASFPMSIHGLNRLRTLLIYDQSPYNPSLSSSILPEL-FNKLACLRALVIRQSLRTLEKFVVGGGVDGSNTC 549 (807)
Q Consensus 471 ~L~l~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~l~~~i~~LP~~-i~~L~~L~~LdL~~~L~~L~~l~~~~~~~~~~~~ 549 (807)
.+...++.++.+|..+. ++|++|+++++ .+..+|.. ++++++|++|+|+.+ .+... +.
T Consensus 11 ~l~c~~~~l~~ip~~~~--~~l~~L~L~~n-------~l~~i~~~~~~~l~~L~~L~L~~n--~l~~~----------~~ 69 (306)
T 2z66_A 11 EIRCNSKGLTSVPTGIP--SSATRLELESN-------KLQSLPHGVFDKLTQLTKLSLSSN--GLSFK----------GC 69 (306)
T ss_dssp EEECCSSCCSSCCSCCC--TTCCEEECCSS-------CCCCCCTTTTTTCTTCSEEECCSS--CCCEE----------EE
T ss_pred EEEcCCCCcccCCCCCC--CCCCEEECCCC-------ccCccCHhHhhccccCCEEECCCC--ccCcc----------cC
Confidence 34455555555665443 56777777776 56666654 567777777777622 11111 00
Q ss_pred cccccccccccCcccccCCCCCCChhHHHHhhccCCCCCCeEEEEeeccCCCcchhhhhchhhHHHHHHhhcCCCCCCCC
Q 047321 550 RLESLKNLQLLRECGIEGLGNVSHLDEAERLQLYNQQNLLRLRLRFGRVVDGEDEERRRKNEKDKQLLEALQPPLSHLPP 629 (807)
Q Consensus 550 ~i~~L~~L~~L~~L~i~~l~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~l~p~~~~lp~ 629 (807)
.......+.+|+.|.+++.. +.. ....+.++++|+.|++++|.+... .....
T Consensus 70 ~~~~~~~~~~L~~L~Ls~n~-i~~----l~~~~~~l~~L~~L~l~~n~l~~~-----------------------~~~~~ 121 (306)
T 2z66_A 70 CSQSDFGTTSLKYLDLSFNG-VIT----MSSNFLGLEQLEHLDFQHSNLKQM-----------------------SEFSV 121 (306)
T ss_dssp EEHHHHSCSCCCEEECCSCS-EEE----EEEEEETCTTCCEEECTTSEEESS-----------------------TTTTT
T ss_pred cccccccccccCEEECCCCc-ccc----ChhhcCCCCCCCEEECCCCccccc-----------------------ccchh
Confidence 11122234445555554311 111 112366778888888887764110 01123
Q ss_pred CCCcc-cceEeccCCcCceeeCcccCCCCCCCCCCCCCCCCCCccccCcccccccccCCCccccchhhhccccCCCCCCc
Q 047321 630 LGKLP-LKKLELRDLESVKRVGNEFLGIEESSEDDPSSSSSSPSVIAFPKLKSLEIDGMKELEEWNYRITRKENISIMPR 708 (807)
Q Consensus 630 l~~L~-L~~L~L~~~~~l~~i~~~~~~~~~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~l~~ 708 (807)
+..++ |++|+++++. +..+.... +..+++|+.|+++++ .+..... +..+..+++
T Consensus 122 ~~~l~~L~~L~l~~n~-l~~~~~~~-------------------~~~l~~L~~L~l~~n-~l~~~~~----~~~~~~l~~ 176 (306)
T 2z66_A 122 FLSLRNLIYLDISHTH-TRVAFNGI-------------------FNGLSSLEVLKMAGN-SFQENFL----PDIFTELRN 176 (306)
T ss_dssp TTTCTTCCEEECTTSC-CEECSTTT-------------------TTTCTTCCEEECTTC-EEGGGEE----CSCCTTCTT
T ss_pred hhhccCCCEEECCCCc-CCccchhh-------------------cccCcCCCEEECCCC-ccccccc----hhHHhhCcC
Confidence 67788 9999998754 44332221 347889999999885 3433111 235667899
Q ss_pred ccEEEEccCCCCCCC-cccccCCCCccEEeeccCcccccccccccccCCCCCCCCeeeeccCCCcccCCccCCCC-Cccc
Q 047321 709 LSSLQIMNCRKLKAL-PDYLLQTIALQKLSIYSCDLLEELPILEDRRTTDIPRLSSLAIWYCPKLKVLPDYLLRT-TTLQ 786 (807)
Q Consensus 709 L~~L~l~~c~~L~~l-p~~l~~l~~L~~L~l~~c~~l~~lP~~~~~~~~~l~~L~~L~i~~c~~l~~lP~~l~~l-~~L~ 786 (807)
|+.|++++| .+..+ |..+..+++|++|++++| .+..+|. ..+..+++|+.|++++|......|..+..+ ++|+
T Consensus 177 L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~---~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~ 251 (306)
T 2z66_A 177 LTFLDLSQC-QLEQLSPTAFNSLSSLQVLNMSHN-NFFSLDT---FPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLA 251 (306)
T ss_dssp CCEEECTTS-CCCEECTTTTTTCTTCCEEECTTS-CCSBCCS---GGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCC
T ss_pred CCEEECCCC-CcCCcCHHHhcCCCCCCEEECCCC-ccCccCh---hhccCcccCCEeECCCCCCcccCHHHHHhhhccCC
Confidence 999999998 56665 667888999999999986 4666651 356788999999999877666677788888 4899
Q ss_pred ccccccchhhhhhh
Q 047321 787 AGEQDYENEKFSQR 800 (807)
Q Consensus 787 ~L~l~~~~~~~~~~ 800 (807)
.|++++|++...-.
T Consensus 252 ~L~L~~N~~~~~c~ 265 (306)
T 2z66_A 252 FLNLTQNDFACTCE 265 (306)
T ss_dssp EEECTTCCEECSGG
T ss_pred EEEccCCCeecccC
Confidence 99999998865433
No 45
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.64 E-value=2.2e-15 Score=161.06 Aligned_cols=256 Identities=14% Similarity=0.190 Sum_probs=173.5
Q ss_pred cceEEEEEeeccCCCCccccCCCCceeEEEeCCCCCCCCCCCCccccc-cccCcccceeeecccc-CCccCeeEecCccC
Q 047321 467 DKVRHLGLKFEEGASFPMSIHGLNRLRTLLIYDQSPYNPSLSSSILPE-LFNKLACLRALVIRQS-LRTLEKFVVGGGVD 544 (807)
Q Consensus 467 ~~~r~L~l~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~l~~~i~~LP~-~i~~L~~L~~LdL~~~-L~~L~~l~~~~~~~ 544 (807)
..++.++++++.+..+|..+. ++|++|++++| .+..+|. .++++++|++|+|+.+ +..+
T Consensus 31 c~l~~l~~~~~~l~~lp~~~~--~~l~~L~L~~n-------~i~~~~~~~~~~l~~L~~L~L~~n~l~~~---------- 91 (330)
T 1xku_A 31 CHLRVVQCSDLGLEKVPKDLP--PDTALLDLQNN-------KITEIKDGDFKNLKNLHTLILINNKISKI---------- 91 (330)
T ss_dssp EETTEEECTTSCCCSCCCSCC--TTCCEEECCSS-------CCCCBCTTTTTTCTTCCEEECCSSCCCCB----------
T ss_pred CCCeEEEecCCCccccCccCC--CCCeEEECCCC-------cCCEeChhhhccCCCCCEEECCCCcCCee----------
Confidence 356788888888887887664 68999999998 7888875 7999999999999832 2211
Q ss_pred CCccccccccccccccCcccccC--CCCCCChhHHHHhhccCCCCCCeEEEEeeccCCCcchhhhhchhhHHHHHHhhcC
Q 047321 545 GSNTCRLESLKNLQLLRECGIEG--LGNVSHLDEAERLQLYNQQNLLRLRLRFGRVVDGEDEERRRKNEKDKQLLEALQP 622 (807)
Q Consensus 545 ~~~~~~i~~L~~L~~L~~L~i~~--l~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~l~p 622 (807)
....+..+.+|+.|.+.+ +..++. .+ .++|+.|+++.|.+
T Consensus 92 -----~~~~~~~l~~L~~L~Ls~n~l~~l~~-------~~--~~~L~~L~l~~n~l------------------------ 133 (330)
T 1xku_A 92 -----SPGAFAPLVKLERLYLSKNQLKELPE-------KM--PKTLQELRVHENEI------------------------ 133 (330)
T ss_dssp -----CTTTTTTCTTCCEEECCSSCCSBCCS-------SC--CTTCCEEECCSSCC------------------------
T ss_pred -----CHHHhcCCCCCCEEECCCCcCCccCh-------hh--cccccEEECCCCcc------------------------
Confidence 123455666777776654 222221 12 26999999998875
Q ss_pred CCCCCCC--CCCcc-cceEeccCCcCce---eeCcccCCCCCC---CCCCCCCCCCCCccccCcccccccccCCCccccc
Q 047321 623 PLSHLPP--LGKLP-LKKLELRDLESVK---RVGNEFLGIEES---SEDDPSSSSSSPSVIAFPKLKSLEIDGMKELEEW 693 (807)
Q Consensus 623 ~~~~lp~--l~~L~-L~~L~L~~~~~l~---~i~~~~~~~~~l---~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~ 693 (807)
..++. ++.++ |+.|+++++. ++ ..+..+.....| .+.++.....|.. .+++|+.|+++++ .+...
T Consensus 134 --~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~--~~~~L~~L~l~~n-~l~~~ 207 (330)
T 1xku_A 134 --TKVRKSVFNGLNQMIVVELGTNP-LKSSGIENGAFQGMKKLSYIRIADTNITTIPQG--LPPSLTELHLDGN-KITKV 207 (330)
T ss_dssp --CBBCHHHHTTCTTCCEEECCSSC-CCGGGBCTTGGGGCTTCCEEECCSSCCCSCCSS--CCTTCSEEECTTS-CCCEE
T ss_pred --cccCHhHhcCCccccEEECCCCc-CCccCcChhhccCCCCcCEEECCCCccccCCcc--ccccCCEEECCCC-cCCcc
Confidence 23332 66788 9999998754 33 223333333333 3333444444433 3478888888875 45554
Q ss_pred hhhhccccCCCCCCcccEEEEccCCCCCCCcc-cccCCCCccEEeeccCcccccccccccccCCCCCCCCeeeeccCCCc
Q 047321 694 NYRITRKENISIMPRLSSLQIMNCRKLKALPD-YLLQTIALQKLSIYSCDLLEELPILEDRRTTDIPRLSSLAIWYCPKL 772 (807)
Q Consensus 694 ~~~~~~~~~~~~l~~L~~L~l~~c~~L~~lp~-~l~~l~~L~~L~l~~c~~l~~lP~~~~~~~~~l~~L~~L~i~~c~~l 772 (807)
+. ..+..+++|+.|++++| .+..++. .+..+++|++|++++| .+..+| ..+..+++|+.|++++| .+
T Consensus 208 ~~-----~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~L~~N-~l~~lp----~~l~~l~~L~~L~l~~N-~i 275 (330)
T 1xku_A 208 DA-----ASLKGLNNLAKLGLSFN-SISAVDNGSLANTPHLRELHLNNN-KLVKVP----GGLADHKYIQVVYLHNN-NI 275 (330)
T ss_dssp CT-----GGGTTCTTCCEEECCSS-CCCEECTTTGGGSTTCCEEECCSS-CCSSCC----TTTTTCSSCCEEECCSS-CC
T ss_pred CH-----HHhcCCCCCCEEECCCC-cCceeChhhccCCCCCCEEECCCC-cCccCC----hhhccCCCcCEEECCCC-cC
Confidence 32 34567888999999888 5666543 6778889999999886 577888 67788889999999875 46
Q ss_pred ccCCc-cCC------CCCcccccccccchhhh
Q 047321 773 KVLPD-YLL------RTTTLQAGEQDYENEKF 797 (807)
Q Consensus 773 ~~lP~-~l~------~l~~L~~L~l~~~~~~~ 797 (807)
+.+|. .+. ..+.|+.+++++|++..
T Consensus 276 ~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~ 307 (330)
T 1xku_A 276 SAIGSNDFCPPGYNTKKASYSGVSLFSNPVQY 307 (330)
T ss_dssp CCCCTTSSSCSSCCTTSCCCSEEECCSSSSCG
T ss_pred CccChhhcCCcccccccccccceEeecCcccc
Confidence 66663 332 24678888898888753
No 46
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.64 E-value=5.7e-16 Score=172.71 Aligned_cols=257 Identities=17% Similarity=0.114 Sum_probs=143.0
Q ss_pred CcceEEEEEeeccCCCCccccCCCCceeEEEeCCCCCCCCCCCCccccccccCcccc-------------eeeecc-ccC
Q 047321 466 GDKVRHLGLKFEEGASFPMSIHGLNRLRTLLIYDQSPYNPSLSSSILPELFNKLACL-------------RALVIR-QSL 531 (807)
Q Consensus 466 ~~~~r~L~l~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~l~~~i~~LP~~i~~L~~L-------------~~LdL~-~~L 531 (807)
...+|.+.+++|.+..+|.+++++++|++|++++|. ....+|.+++++++| ++|+++ ..+
T Consensus 10 ~~~L~~L~l~~n~l~~iP~~i~~L~~L~~L~l~~n~------~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l 83 (454)
T 1jl5_A 10 NTFLQEPLRHSSNLTEMPVEAENVKSKTEYYNAWSE------WERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGL 83 (454)
T ss_dssp ------------------------CCHHHHHHHHHH------HHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSCC
T ss_pred cccchhhhcccCchhhCChhHhcccchhhhhccCCc------ccccCCcccccchhcchhhhhhhhccCCCEEEecCCcc
Confidence 467899999999998899999999999999999872 334789999999987 666665 222
Q ss_pred -------CccCeeEecCccCCCccccccccccccccCcccccCCCCCCChhHHHHhhccCC-CCCCeEEEEeeccCCCcc
Q 047321 532 -------RTLEKFVVGGGVDGSNTCRLESLKNLQLLRECGIEGLGNVSHLDEAERLQLYNQ-QNLLRLRLRFGRVVDGED 603 (807)
Q Consensus 532 -------~~L~~l~~~~~~~~~~~~~i~~L~~L~~L~~L~i~~l~~~~~~~~~~~~~l~~l-~~L~~L~L~~~~~~~~~~ 603 (807)
.+|+.++++.+.....+. .+.+|+.|.+.+. .+.. +... ++|++|+++.|.+
T Consensus 84 ~~lp~~~~~L~~L~l~~n~l~~lp~------~~~~L~~L~l~~n-~l~~--------l~~~~~~L~~L~L~~n~l----- 143 (454)
T 1jl5_A 84 SSLPELPPHLESLVASCNSLTELPE------LPQSLKSLLVDNN-NLKA--------LSDLPPLLEYLGVSNNQL----- 143 (454)
T ss_dssp SCCCSCCTTCSEEECCSSCCSSCCC------CCTTCCEEECCSS-CCSC--------CCSCCTTCCEEECCSSCC-----
T ss_pred ccCCCCcCCCCEEEccCCcCCcccc------ccCCCcEEECCCC-ccCc--------ccCCCCCCCEEECcCCCC-----
Confidence 335555555554221111 1234444444331 1111 1112 5777888877764
Q ss_pred hhhhhchhhHHHHHHhhcCCCCCCCCCCCcc-cceEeccCCcCceeeCcccCCCCCCCCCCCCCCCCCCccccCcccccc
Q 047321 604 EERRRKNEKDKQLLEALQPPLSHLPPLGKLP-LKKLELRDLESVKRVGNEFLGIEESSEDDPSSSSSSPSVIAFPKLKSL 682 (807)
Q Consensus 604 ~~~~~~~~~~~~~l~~l~p~~~~lp~l~~L~-L~~L~L~~~~~l~~i~~~~~~~~~l~~~~~~~~~~~~~~~~l~~L~~L 682 (807)
..+|.++.++ |++|+++++ .++.++........|.+.++.....| .+..+++|+.|
T Consensus 144 ---------------------~~lp~~~~l~~L~~L~l~~N-~l~~lp~~~~~L~~L~L~~n~l~~l~-~~~~l~~L~~L 200 (454)
T 1jl5_A 144 ---------------------EKLPELQNSSFLKIIDVDNN-SLKKLPDLPPSLEFIAAGNNQLEELP-ELQNLPFLTAI 200 (454)
T ss_dssp ---------------------SSCCCCTTCTTCCEEECCSS-CCSCCCCCCTTCCEEECCSSCCSSCC-CCTTCTTCCEE
T ss_pred ---------------------CCCcccCCCCCCCEEECCCC-cCcccCCCcccccEEECcCCcCCcCc-cccCCCCCCEE
Confidence 4577788889 999999885 46667665555556666666555544 57788999999
Q ss_pred cccCCCccccchhhhccccCCCCCCcccEEEEccCCCCCCCcccccCCCCccEEeeccCcccccccccccccCCCCCCCC
Q 047321 683 EIDGMKELEEWNYRITRKENISIMPRLSSLQIMNCRKLKALPDYLLQTIALQKLSIYSCDLLEELPILEDRRTTDIPRLS 762 (807)
Q Consensus 683 ~l~~~~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~lp~~l~~l~~L~~L~l~~c~~l~~lP~~~~~~~~~l~~L~ 762 (807)
+++++ .+..++. ..++|+.|++++| .+..+| .+..+++|++|++++| .+..+| . .+++|+
T Consensus 201 ~l~~N-~l~~l~~---------~~~~L~~L~l~~n-~l~~lp-~~~~l~~L~~L~l~~N-~l~~l~----~---~~~~L~ 260 (454)
T 1jl5_A 201 YADNN-SLKKLPD---------LPLSLESIVAGNN-ILEELP-ELQNLPFLTTIYADNN-LLKTLP----D---LPPSLE 260 (454)
T ss_dssp ECCSS-CCSSCCC---------CCTTCCEEECCSS-CCSSCC-CCTTCTTCCEEECCSS-CCSSCC----S---CCTTCC
T ss_pred ECCCC-cCCcCCC---------CcCcccEEECcCC-cCCccc-ccCCCCCCCEEECCCC-cCCccc----c---cccccC
Confidence 99885 4554443 2357888888877 666777 4777778888888775 456665 1 235566
Q ss_pred eeeeccCCCcccCCccCCCCCcccccccccchh
Q 047321 763 SLAIWYCPKLKVLPDYLLRTTTLQAGEQDYENE 795 (807)
Q Consensus 763 ~L~i~~c~~l~~lP~~l~~l~~L~~L~l~~~~~ 795 (807)
.|++++| .++.+|.. +++|+.|++++|.+
T Consensus 261 ~L~l~~N-~l~~l~~~---~~~L~~L~ls~N~l 289 (454)
T 1jl5_A 261 ALNVRDN-YLTDLPEL---PQSLTFLDVSENIF 289 (454)
T ss_dssp EEECCSS-CCSCCCCC---CTTCCEEECCSSCC
T ss_pred EEECCCC-cccccCcc---cCcCCEEECcCCcc
Confidence 6666553 34445432 23444555555443
No 47
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.64 E-value=4.1e-15 Score=165.77 Aligned_cols=263 Identities=17% Similarity=0.162 Sum_probs=147.6
Q ss_pred cceEEEEEeeccCCCCccccCCCCceeEEEeCCCCCCCCCCCCccccccccCcccceeeecc--------ccCCccCeeE
Q 047321 467 DKVRHLGLKFEEGASFPMSIHGLNRLRTLLIYDQSPYNPSLSSSILPELFNKLACLRALVIR--------QSLRTLEKFV 538 (807)
Q Consensus 467 ~~~r~L~l~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~l~~~i~~LP~~i~~L~~L~~LdL~--------~~L~~L~~l~ 538 (807)
.++++|++++|.+..++.. .++|++|++++| .+..+| .++++++|++|+++ ....+|+.+.
T Consensus 111 ~~L~~L~l~~n~l~~l~~~---~~~L~~L~L~~n-------~l~~lp-~~~~l~~L~~L~l~~N~l~~lp~~~~~L~~L~ 179 (454)
T 1jl5_A 111 QSLKSLLVDNNNLKALSDL---PPLLEYLGVSNN-------QLEKLP-ELQNSSFLKIIDVDNNSLKKLPDLPPSLEFIA 179 (454)
T ss_dssp TTCCEEECCSSCCSCCCSC---CTTCCEEECCSS-------CCSSCC-CCTTCTTCCEEECCSSCCSCCCCCCTTCCEEE
T ss_pred CCCcEEECCCCccCcccCC---CCCCCEEECcCC-------CCCCCc-ccCCCCCCCEEECCCCcCcccCCCcccccEEE
Confidence 5566666666665544321 156777777776 666777 48888888888887 1233456666
Q ss_pred ecCccCCCccccccccccccccCcccccCC--CCCCChhHHHHhhccCCCCCCeEEEEeeccCCCcchhhhhchhhHHHH
Q 047321 539 VGGGVDGSNTCRLESLKNLQLLRECGIEGL--GNVSHLDEAERLQLYNQQNLLRLRLRFGRVVDGEDEERRRKNEKDKQL 616 (807)
Q Consensus 539 ~~~~~~~~~~~~i~~L~~L~~L~~L~i~~l--~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~ 616 (807)
++.+.+. .+..+..+.+|+.|.+.+. ..++. ...+|+.|+++.|.+
T Consensus 180 L~~n~l~----~l~~~~~l~~L~~L~l~~N~l~~l~~----------~~~~L~~L~l~~n~l------------------ 227 (454)
T 1jl5_A 180 AGNNQLE----ELPELQNLPFLTAIYADNNSLKKLPD----------LPLSLESIVAGNNIL------------------ 227 (454)
T ss_dssp CCSSCCS----SCCCCTTCTTCCEEECCSSCCSSCCC----------CCTTCCEEECCSSCC------------------
T ss_pred CcCCcCC----cCccccCCCCCCEEECCCCcCCcCCC----------CcCcccEEECcCCcC------------------
Confidence 6665422 2334566666666555441 11111 124677777776663
Q ss_pred HHhhcCCCCCCCCCCCcc-cceEeccCCcCceeeCcccCCCCCCCCCCCCCCCCCCccccCcccccccccCCCccccchh
Q 047321 617 LEALQPPLSHLPPLGKLP-LKKLELRDLESVKRVGNEFLGIEESSEDDPSSSSSSPSVIAFPKLKSLEIDGMKELEEWNY 695 (807)
Q Consensus 617 l~~l~p~~~~lp~l~~L~-L~~L~L~~~~~l~~i~~~~~~~~~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~ 695 (807)
..+|.++.++ |++|+++++. ++.++........|.+.++.....|. .+++|+.|+++++ .+..++.
T Consensus 228 --------~~lp~~~~l~~L~~L~l~~N~-l~~l~~~~~~L~~L~l~~N~l~~l~~---~~~~L~~L~ls~N-~l~~l~~ 294 (454)
T 1jl5_A 228 --------EELPELQNLPFLTTIYADNNL-LKTLPDLPPSLEALNVRDNYLTDLPE---LPQSLTFLDVSEN-IFSGLSE 294 (454)
T ss_dssp --------SSCCCCTTCTTCCEEECCSSC-CSSCCSCCTTCCEEECCSSCCSCCCC---CCTTCCEEECCSS-CCSEESC
T ss_pred --------CcccccCCCCCCCEEECCCCc-CCcccccccccCEEECCCCcccccCc---ccCcCCEEECcCC-ccCcccC
Confidence 3556677777 7777777643 45554433333444444444333332 2356666666653 2332211
Q ss_pred ---hhc-------cccCCCCC-CcccEEEEccCCCCCCCcccccCCCCccEEeeccCcccccccccccccCCCCCCCCee
Q 047321 696 ---RIT-------RKENISIM-PRLSSLQIMNCRKLKALPDYLLQTIALQKLSIYSCDLLEELPILEDRRTTDIPRLSSL 764 (807)
Q Consensus 696 ---~~~-------~~~~~~~l-~~L~~L~l~~c~~L~~lp~~l~~l~~L~~L~l~~c~~l~~lP~~~~~~~~~l~~L~~L 764 (807)
... ....+..+ ++|+.|++++| ++..+|.. +++|+.|++++| .+..+| . .+++|+.|
T Consensus 295 ~~~~L~~L~l~~N~l~~i~~~~~~L~~L~Ls~N-~l~~lp~~---~~~L~~L~L~~N-~l~~lp----~---~l~~L~~L 362 (454)
T 1jl5_A 295 LPPNLYYLNASSNEIRSLCDLPPSLEELNVSNN-KLIELPAL---PPRLERLIASFN-HLAEVP----E---LPQNLKQL 362 (454)
T ss_dssp CCTTCCEEECCSSCCSEECCCCTTCCEEECCSS-CCSCCCCC---CTTCCEEECCSS-CCSCCC----C---CCTTCCEE
T ss_pred cCCcCCEEECcCCcCCcccCCcCcCCEEECCCC-cccccccc---CCcCCEEECCCC-cccccc----c---hhhhccEE
Confidence 000 00011223 48889999887 67778864 588999999986 677888 3 57899999
Q ss_pred eeccCCCcc--cCCccCCCC-------------Ccccccccccchhhh
Q 047321 765 AIWYCPKLK--VLPDYLLRT-------------TTLQAGEQDYENEKF 797 (807)
Q Consensus 765 ~i~~c~~l~--~lP~~l~~l-------------~~L~~L~l~~~~~~~ 797 (807)
++++|.... .+|.+++++ ++|+.|++++|++..
T Consensus 363 ~L~~N~l~~l~~ip~~l~~L~~n~~~~~i~~~~~~L~~L~ls~N~l~~ 410 (454)
T 1jl5_A 363 HVEYNPLREFPDIPESVEDLRMNSHLAEVPELPQNLKQLHVETNPLRE 410 (454)
T ss_dssp ECCSSCCSSCCCCCTTCCEEECCC------------------------
T ss_pred ECCCCCCCcCCCChHHHHhhhhcccccccccccCcCCEEECCCCcCCc
Confidence 999876555 678888877 889999999999875
No 48
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.63 E-value=1.4e-15 Score=177.97 Aligned_cols=115 Identities=16% Similarity=0.129 Sum_probs=87.1
Q ss_pred ccCcccccccccCCCccccchhhhccccCCCCCCcccEEEEccCCCCCCC-cccccCCCCccEEeeccCccccccccccc
Q 047321 674 IAFPKLKSLEIDGMKELEEWNYRITRKENISIMPRLSSLQIMNCRKLKAL-PDYLLQTIALQKLSIYSCDLLEELPILED 752 (807)
Q Consensus 674 ~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~l-p~~l~~l~~L~~L~l~~c~~l~~lP~~~~ 752 (807)
..+++|+.|+++++.....+. +..+..+++|+.|++++| +++.+ |..+..+++|++|+|+++ .+..+|.
T Consensus 466 ~~~~~L~~L~Ls~N~~~~~~~-----~~~~~~l~~L~~L~Ls~N-~L~~l~~~~f~~l~~L~~L~Ls~N-~l~~l~~--- 535 (635)
T 4g8a_A 466 NGLSSLEVLKMAGNSFQENFL-----PDIFTELRNLTFLDLSQC-QLEQLSPTAFNSLSSLQVLNMSHN-NFFSLDT--- 535 (635)
T ss_dssp TTCTTCCEEECTTCEEGGGEE-----CSCCTTCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEECTTS-CCCBCCC---
T ss_pred ccchhhhhhhhhhcccccccC-----chhhhhccccCEEECCCC-ccCCcChHHHcCCCCCCEEECCCC-cCCCCCh---
Confidence 456677777777654444333 245677899999999999 67776 567889999999999996 5777651
Q ss_pred ccCCCCCCCCeeeeccCCCcccCCccCCCC-Ccccccccccchhhhh
Q 047321 753 RRTTDIPRLSSLAIWYCPKLKVLPDYLLRT-TTLQAGEQDYENEKFS 798 (807)
Q Consensus 753 ~~~~~l~~L~~L~i~~c~~l~~lP~~l~~l-~~L~~L~l~~~~~~~~ 798 (807)
..+..+++|+.|++++|......|..+.++ ++|+.|++++|++..+
T Consensus 536 ~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~C~ 582 (635)
T 4g8a_A 536 FPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACT 582 (635)
T ss_dssp GGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCCBCCS
T ss_pred hHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCCccc
Confidence 457889999999999865444456788888 6899999999888653
No 49
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.63 E-value=1.8e-16 Score=168.53 Aligned_cols=236 Identities=14% Similarity=0.106 Sum_probs=166.1
Q ss_pred CcceEEEEEeeccCCCCc-cccCCCCceeEEEeCCCCCCCCCCCCccccccccCcccceeeeccccCCccCeeEecCccC
Q 047321 466 GDKVRHLGLKFEEGASFP-MSIHGLNRLRTLLIYDQSPYNPSLSSSILPELFNKLACLRALVIRQSLRTLEKFVVGGGVD 544 (807)
Q Consensus 466 ~~~~r~L~l~~~~~~~~~-~~~~~l~~Lr~L~l~~~~~~~l~~~i~~LP~~i~~L~~L~~LdL~~~L~~L~~l~~~~~~~ 544 (807)
..++++|++++|.+...+ ..+..+++|++|++++| .+..+|. ++.+++|++|+++.+
T Consensus 33 ~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n-------~l~~~~~-~~~l~~L~~L~Ls~n-------------- 90 (317)
T 3o53_A 33 AWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSN-------VLYETLD-LESLSTLRTLDLNNN-------------- 90 (317)
T ss_dssp GGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTS-------CCEEEEE-ETTCTTCCEEECCSS--------------
T ss_pred CCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCC-------cCCcchh-hhhcCCCCEEECcCC--------------
Confidence 457889999988887654 67888999999999988 6766665 888889999988722
Q ss_pred CCccccccccccccccCcccccCCCCCCChhHHHHhhccCCCCCCeEEEEeeccCCCcchhhhhchhhHHHHHHhhcCCC
Q 047321 545 GSNTCRLESLKNLQLLRECGIEGLGNVSHLDEAERLQLYNQQNLLRLRLRFGRVVDGEDEERRRKNEKDKQLLEALQPPL 624 (807)
Q Consensus 545 ~~~~~~i~~L~~L~~L~~L~i~~l~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~l~p~~ 624 (807)
.+..+..+.+|+.|.+.+.. +... ....+++|+.|++++|.+
T Consensus 91 -----~l~~l~~~~~L~~L~l~~n~-l~~~------~~~~~~~L~~L~l~~N~l-------------------------- 132 (317)
T 3o53_A 91 -----YVQELLVGPSIETLHAANNN-ISRV------SCSRGQGKKNIYLANNKI-------------------------- 132 (317)
T ss_dssp -----EEEEEEECTTCCEEECCSSC-CSEE------EECCCSSCEEEECCSSCC--------------------------
T ss_pred -----ccccccCCCCcCEEECCCCc-cCCc------CccccCCCCEEECCCCCC--------------------------
Confidence 23333344556665554411 1111 123467888888888874
Q ss_pred CCCC--CCCCcc-cceEeccCCcCceeeCcccCCCCCCCCCCCCCCCCCCccccCcccccccccCCCccccchhhhcccc
Q 047321 625 SHLP--PLGKLP-LKKLELRDLESVKRVGNEFLGIEESSEDDPSSSSSSPSVIAFPKLKSLEIDGMKELEEWNYRITRKE 701 (807)
Q Consensus 625 ~~lp--~l~~L~-L~~L~L~~~~~l~~i~~~~~~~~~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~ 701 (807)
..++ .++.++ |++|+++++. +..++.... ...+++|+.|+++++ .+..++.
T Consensus 133 ~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~------------------~~~l~~L~~L~L~~N-~l~~~~~------ 186 (317)
T 3o53_A 133 TMLRDLDEGCRSRVQYLDLKLNE-IDTVNFAEL------------------AASSDTLEHLNLQYN-FIYDVKG------ 186 (317)
T ss_dssp CSGGGBCTGGGSSEEEEECTTSC-CCEEEGGGG------------------GGGTTTCCEEECTTS-CCCEEEC------
T ss_pred CCccchhhhccCCCCEEECCCCC-CCcccHHHH------------------hhccCcCCEEECCCC-cCccccc------
Confidence 2222 256678 8999998754 444432110 125788899999885 5665543
Q ss_pred CCCCCCcccEEEEccCCCCCCCcccccCCCCccEEeeccCcccccccccccccCCCCCCCCeeeeccCCCc-ccCCccCC
Q 047321 702 NISIMPRLSSLQIMNCRKLKALPDYLLQTIALQKLSIYSCDLLEELPILEDRRTTDIPRLSSLAIWYCPKL-KVLPDYLL 780 (807)
Q Consensus 702 ~~~~l~~L~~L~l~~c~~L~~lp~~l~~l~~L~~L~l~~c~~l~~lP~~~~~~~~~l~~L~~L~i~~c~~l-~~lP~~l~ 780 (807)
...+++|+.|++++| ++..+|..+..+++|+.|++++| .+..+| ..+..+++|+.|++++|+.. ..+|..+.
T Consensus 187 -~~~l~~L~~L~Ls~N-~l~~l~~~~~~l~~L~~L~L~~N-~l~~l~----~~~~~l~~L~~L~l~~N~~~~~~~~~~~~ 259 (317)
T 3o53_A 187 -QVVFAKLKTLDLSSN-KLAFMGPEFQSAAGVTWISLRNN-KLVLIE----KALRFSQNLEHFDLRGNGFHCGTLRDFFS 259 (317)
T ss_dssp -CCCCTTCCEEECCSS-CCCEECGGGGGGTTCSEEECTTS-CCCEEC----TTCCCCTTCCEEECTTCCCBHHHHHHHHH
T ss_pred -ccccccCCEEECCCC-cCCcchhhhcccCcccEEECcCC-cccchh----hHhhcCCCCCEEEccCCCccCcCHHHHHh
Confidence 235888999999888 78888878888889999999886 677888 66778888999999887765 46777788
Q ss_pred CCCcccccccccch
Q 047321 781 RTTTLQAGEQDYEN 794 (807)
Q Consensus 781 ~l~~L~~L~l~~~~ 794 (807)
.++.|+.+++++|+
T Consensus 260 ~~~~L~~l~l~~~~ 273 (317)
T 3o53_A 260 KNQRVQTVAKQTVK 273 (317)
T ss_dssp TCHHHHHHHHHHHH
T ss_pred ccccceEEECCCch
Confidence 88888888887543
No 50
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.62 E-value=1.4e-15 Score=174.89 Aligned_cols=122 Identities=16% Similarity=0.218 Sum_probs=82.5
Q ss_pred CcceEEEEEeeccCCCC-ccccCCCCceeEEEeCCCCCCCCCCCCcccc-ccccCcccceeeecc------------ccC
Q 047321 466 GDKVRHLGLKFEEGASF-PMSIHGLNRLRTLLIYDQSPYNPSLSSSILP-ELFNKLACLRALVIR------------QSL 531 (807)
Q Consensus 466 ~~~~r~L~l~~~~~~~~-~~~~~~l~~Lr~L~l~~~~~~~l~~~i~~LP-~~i~~L~~L~~LdL~------------~~L 531 (807)
+..+++|++++|.+... |..|.++++||+|++++| .+..+| ..++++++|++|+|+ .++
T Consensus 25 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n-------~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l 97 (549)
T 2z81_A 25 TAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSS-------RINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPL 97 (549)
T ss_dssp CTTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTS-------CCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTC
T ss_pred CCCccEEECcCCccCccChhhhhcCCcccEEECCCC-------CcCccChhhccccccCCEEECCCCccCccCHHHhccC
Confidence 46789999999888764 567888999999999988 666664 678888888888887 567
Q ss_pred CccCeeEecCccCCCccccccccccccccCcccccCCCCCCChhHHHHhhccCCCCCCeEEEEeecc
Q 047321 532 RTLEKFVVGGGVDGSNTCRLESLKNLQLLRECGIEGLGNVSHLDEAERLQLYNQQNLLRLRLRFGRV 598 (807)
Q Consensus 532 ~~L~~l~~~~~~~~~~~~~i~~L~~L~~L~~L~i~~l~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~ 598 (807)
.+|+.++++.+.+... .....+.++.+|+.|.+.+...+... ....+.++++|+.|++++|.+
T Consensus 98 ~~L~~L~Ls~n~l~~~-~~~~~~~~l~~L~~L~L~~n~~~~~~---~~~~~~~l~~L~~L~L~~n~l 160 (549)
T 2z81_A 98 SSLKYLNLMGNPYQTL-GVTSLFPNLTNLQTLRIGNVETFSEI---RRIDFAGLTSLNELEIKALSL 160 (549)
T ss_dssp TTCCEEECTTCCCSSS-CSSCSCTTCTTCCEEEEEESSSCCEE---CTTTTTTCCEEEEEEEEETTC
T ss_pred CCCcEEECCCCccccc-chhhhhhccCCccEEECCCCcccccc---CHhhhhcccccCeeeccCCcc
Confidence 7788888877653211 11234566667777666553211111 112456677777777777664
No 51
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.62 E-value=1.3e-15 Score=179.77 Aligned_cols=120 Identities=18% Similarity=0.175 Sum_probs=72.8
Q ss_pred CcceEEEEEeeccCCCCcc-ccCCCCceeEEEeCCCCCCCCCCCCccc-cccccCcccceeeecc------------ccC
Q 047321 466 GDKVRHLGLKFEEGASFPM-SIHGLNRLRTLLIYDQSPYNPSLSSSIL-PELFNKLACLRALVIR------------QSL 531 (807)
Q Consensus 466 ~~~~r~L~l~~~~~~~~~~-~~~~l~~Lr~L~l~~~~~~~l~~~i~~L-P~~i~~L~~L~~LdL~------------~~L 531 (807)
+.++++|++++|.+..++. .|.++++|++|++++| .+..+ |..++++++|++|+|+ .++
T Consensus 24 ~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n-------~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l 96 (680)
T 1ziw_A 24 PTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFN-------TISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFC 96 (680)
T ss_dssp CTTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSS-------CCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTC
T ss_pred CCCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCC-------ccCccCHHHHhcccCcCEEECCCCccCccChhhhccC
Confidence 5788999999888877554 5888888999998887 44444 5667777777777776 345
Q ss_pred CccCeeEecCccCCCccccccccccccccCcccccCCCCCCChhHHHHhhccCCCCCCeEEEEeecc
Q 047321 532 RTLEKFVVGGGVDGSNTCRLESLKNLQLLRECGIEGLGNVSHLDEAERLQLYNQQNLLRLRLRFGRV 598 (807)
Q Consensus 532 ~~L~~l~~~~~~~~~~~~~i~~L~~L~~L~~L~i~~l~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~ 598 (807)
.+|+.++++.+.+.. .....+.++.+|+.|.+.+..- . ......+.++++|+.|++++|.+
T Consensus 97 ~~L~~L~L~~n~l~~--~~~~~~~~l~~L~~L~Ls~n~l-~---~~~~~~~~~l~~L~~L~L~~n~l 157 (680)
T 1ziw_A 97 TNLTELHLMSNSIQK--IKNNPFVKQKNLITLDLSHNGL-S---STKLGTQVQLENLQELLLSNNKI 157 (680)
T ss_dssp TTCSEEECCSSCCCC--CCSCTTTTCTTCCEEECCSSCC-S---CCCCCSSSCCTTCCEEECCSSCC
T ss_pred CCCCEEECCCCccCc--cChhHccccCCCCEEECCCCcc-c---ccCchhhcccccCCEEEccCCcc
Confidence 556666666554211 1112345555566655544211 1 01111345666777777766653
No 52
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.61 E-value=1.8e-15 Score=172.64 Aligned_cols=118 Identities=16% Similarity=0.144 Sum_probs=88.8
Q ss_pred CcceEEEEEeeccCCCCc-cccCCCCceeEEEeCCCCCCCCCCCCccc-cccccCcccceeeecc---------ccCCcc
Q 047321 466 GDKVRHLGLKFEEGASFP-MSIHGLNRLRTLLIYDQSPYNPSLSSSIL-PELFNKLACLRALVIR---------QSLRTL 534 (807)
Q Consensus 466 ~~~~r~L~l~~~~~~~~~-~~~~~l~~Lr~L~l~~~~~~~l~~~i~~L-P~~i~~L~~L~~LdL~---------~~L~~L 534 (807)
+.++++|++++|.+...+ ..|.++++|++|++++| .+..+ |..++++++|++|+|+ ..+.+|
T Consensus 20 ~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n-------~l~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~l~~L 92 (520)
T 2z7x_B 20 SQKTTILNISQNYISELWTSDILSLSKLRILIISHN-------RIQYLDISVFKFNQELEYLDLSHNKLVKISCHPTVNL 92 (520)
T ss_dssp CTTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSS-------CCCEEEGGGGTTCTTCCEEECCSSCCCEEECCCCCCC
T ss_pred cccccEEECCCCcccccChhhccccccccEEecCCC-------ccCCcChHHhhcccCCCEEecCCCceeecCccccCCc
Confidence 478999999999998755 68999999999999998 77777 7899999999999998 356778
Q ss_pred CeeEecCccCCCccccccccccccccCcccccCCCCCCChhHHHHhhccCCCCC--CeEEEEeecc
Q 047321 535 EKFVVGGGVDGSNTCRLESLKNLQLLRECGIEGLGNVSHLDEAERLQLYNQQNL--LRLRLRFGRV 598 (807)
Q Consensus 535 ~~l~~~~~~~~~~~~~i~~L~~L~~L~~L~i~~l~~~~~~~~~~~~~l~~l~~L--~~L~L~~~~~ 598 (807)
+.++++.+.+... ..+..++++.+|+.|.+.+-. +. . ..+..+++| +.|++++|.+
T Consensus 93 ~~L~L~~N~l~~~-~~p~~~~~l~~L~~L~L~~n~-l~---~---~~~~~l~~L~L~~L~l~~n~l 150 (520)
T 2z7x_B 93 KHLDLSFNAFDAL-PICKEFGNMSQLKFLGLSTTH-LE---K---SSVLPIAHLNISKVLLVLGET 150 (520)
T ss_dssp SEEECCSSCCSSC-CCCGGGGGCTTCCEEEEEESS-CC---G---GGGGGGTTSCEEEEEEEECTT
T ss_pred cEEeccCCccccc-cchhhhccCCcceEEEecCcc-cc---h---hhccccccceeeEEEeecccc
Confidence 8888887763211 122456777778877776521 21 1 245566677 9999988874
No 53
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=99.61 E-value=2.8e-14 Score=154.19 Aligned_cols=292 Identities=11% Similarity=0.067 Sum_probs=170.6
Q ss_pred cCCccccccchHHHHHHHHhCCCCCCCCCceEEEEEccCCChHHHHHHHHHcCcccccccceEEEEEeCCC-----CCHH
Q 047321 102 DEGGVCGRVDEKNELLSKLLCGSSEQQKGLDVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSNT-----FEEI 176 (807)
Q Consensus 102 ~~~~~vGR~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~-----~~~~ 176 (807)
.+..|+||+++++.|.+ +. . +++.|+|++|+|||||++.+++. ... ..+|+++... .+..
T Consensus 11 ~~~~~~gR~~el~~L~~-l~------~---~~v~i~G~~G~GKT~L~~~~~~~--~~~---~~~~~~~~~~~~~~~~~~~ 75 (357)
T 2fna_A 11 NRKDFFDREKEIEKLKG-LR------A---PITLVLGLRRTGKSSIIKIGINE--LNL---PYIYLDLRKFEERNYISYK 75 (357)
T ss_dssp SGGGSCCCHHHHHHHHH-TC------S---SEEEEEESTTSSHHHHHHHHHHH--HTC---CEEEEEGGGGTTCSCCCHH
T ss_pred CHHHhcChHHHHHHHHH-hc------C---CcEEEECCCCCCHHHHHHHHHHh--cCC---CEEEEEchhhccccCCCHH
Confidence 44679999999999999 64 2 59999999999999999999873 222 2578877642 3444
Q ss_pred HHHHHHHHHcC--------------C------CCC---------CCccHHHHHHHHHHHHhCCceEEEEeCCCCCC---c
Q 047321 177 SVAKAIIEGLG--------------V------SAF---------GLSEFESLMKQIQEYITGKKIFLVLDDVWDGD---Y 224 (807)
Q Consensus 177 ~~~~~i~~~l~--------------~------~~~---------~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~---~ 224 (807)
..+..+.+.+. . ... .......+...+.+... ++.+||+||++.-+ .
T Consensus 76 ~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~-~~~vlvlDe~~~~~~~~~ 154 (357)
T 2fna_A 76 DFLLELQKEINKLVKRLPSLLKALKNIQGIVIMGNEIKFNWNRKDRLSFANLLESFEQASK-DNVIIVLDEAQELVKLRG 154 (357)
T ss_dssp HHHHHHHHHHHHHHHHCTTHHHHTTTSTTEEECSSSEEEC-----CCCHHHHHHHHHHTCS-SCEEEEEETGGGGGGCTT
T ss_pred HHHHHHHHHHHHHhhhhhHHHHHhcccceEEecceEEEeccCCcchhhHHHHHHHHHhcCC-CCeEEEEECHHHhhccCc
Confidence 44444433221 0 000 01234444444443222 49999999996532 1
Q ss_pred cChHHHHHhhcCCCCCcEEEEEcCCHHHHHHh----------C-C-CceEeCCCCChhhHHHHHHHHHhccCCccCccch
Q 047321 225 KKWDPFFSCLKNGHHESKILITTHDRSVALQL----------G-S-IDIIPVKELGEGECWLLFKQIAFLRRSFEDCEKL 292 (807)
Q Consensus 225 ~~~~~l~~~l~~~~~gs~IliTTR~~~v~~~~----------~-~-~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~~ 292 (807)
..+..+...+....++.++|+|++.......+ . . ...+.+.+|+.+++.+++.......+. ....
T Consensus 155 ~~~~~~l~~~~~~~~~~~~i~~g~~~~~l~~~l~~~~~~~~l~~r~~~~i~l~~l~~~e~~~~l~~~~~~~~~--~~~~- 231 (357)
T 2fna_A 155 VNLLPALAYAYDNLKRIKFIMSGSEMGLLYDYLRVEDPESPLFGRAFSTVELKPFSREEAIEFLRRGFQEADI--DFKD- 231 (357)
T ss_dssp CCCHHHHHHHHHHCTTEEEEEEESSHHHHHHHTTTTCTTSTTTTCCCEEEEECCCCHHHHHHHHHHHHHHHTC--CCCC-
T ss_pred hhHHHHHHHHHHcCCCeEEEEEcCchHHHHHHHhccCCCCccccCccceeecCCCCHHHHHHHHHHHHHHcCC--CCCc-
Confidence 23333333333223467899999987643221 1 1 247899999999999999875421111 1111
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHhhcCCCHHHHHHHHhccccccccCCCCchhhH-Hhccc--CCCCccchhhhhhhhc
Q 047321 293 EPIGRKIASKCKGLPLAAKVIGNLLRSKNTAKEWHIILDSEMWKVQEIGQGILAPL-LLSYN--DLPSNSMVKRCFSYCA 369 (807)
Q Consensus 293 ~~~~~~I~~~c~glPLai~~~~~~l~~~~~~~~w~~~~~~~~~~~~~~~~~i~~~l-~lsy~--~L~~~~~~k~cfl~~s 369 (807)
...|++.|+|+|+++..++..+....+...|..-.-..... .+...+ .+.+. .|++ ..+..+..+|
T Consensus 232 ---~~~i~~~t~G~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~l~~~~~~~~~l~~--~~~~~l~~la 300 (357)
T 2fna_A 232 ---YEVVYEKIGGIPGWLTYFGFIYLDNKNLDFAINQTLEYAKK------LILKEFENFLHGREIARK--RYLNIMRTLS 300 (357)
T ss_dssp ---HHHHHHHHCSCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH------HHHHHHHHHHTTCGGGHH--HHHHHHHHHT
T ss_pred ---HHHHHHHhCCCHHHHHHHHHHHccccchHHHHHHHHHHHHH------HHHHHHHHHhhccccccH--HHHHHHHHHH
Confidence 17899999999999999988765433333332211000000 011111 11111 5666 7888888888
Q ss_pred cCCCcceechhHHHHHHH-hcCCCCCCCCchHHHHHHHHHHHHhhcCCcceeccCCCCCccEEEE-ChhHHHHH
Q 047321 370 VFPKDYNMNKRELINLWM-TQGYLNADEDEEMEMIGEEYFNILATRSFFQEFQKNDDDDFTSCKM-HDIVNDFA 441 (807)
Q Consensus 370 ~fp~~~~i~~~~li~~W~-aeg~i~~~~~~~~e~~~~~~~~~L~~rsll~~~~~~~~~~~~~~~m-Hdlv~~~a 441 (807)
.- . +...+....- ..|. .........+++.|++.++|.... + .|++ |++++++.
T Consensus 301 ~g---~--~~~~l~~~~~~~~g~------~~~~~~~~~~L~~L~~~gli~~~~----~---~y~f~~~~~~~~l 356 (357)
T 2fna_A 301 KC---G--KWSDVKRALELEEGI------EISDSEIYNYLTQLTKHSWIIKEG----E---KYCPSEPLISLAF 356 (357)
T ss_dssp TC---B--CHHHHHHHHHHHHCS------CCCHHHHHHHHHHHHHTTSEEESS----S---CEEESSHHHHHHT
T ss_pred cC---C--CHHHHHHHHHHhcCC------CCCHHHHHHHHHHHHhCCCEEecC----C---EEEecCHHHHHhh
Confidence 72 1 3344332110 1121 001234667899999999997642 1 2554 78888764
No 54
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.61 E-value=6e-16 Score=178.77 Aligned_cols=238 Identities=16% Similarity=0.139 Sum_probs=131.8
Q ss_pred cceEEEEEeeccCCCCccccCCCCceeEEEeCCCCCCCCCCCCccccccccCcccceeeecc----------ccCCccCe
Q 047321 467 DKVRHLGLKFEEGASFPMSIHGLNRLRTLLIYDQSPYNPSLSSSILPELFNKLACLRALVIR----------QSLRTLEK 536 (807)
Q Consensus 467 ~~~r~L~l~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~l~~~i~~LP~~i~~L~~L~~LdL~----------~~L~~L~~ 536 (807)
..++.|+++++.+..+|..+..+ +|++|++.+| .+..+|. ..+++|++|+++ ..+..|+.
T Consensus 282 ~~L~~L~l~~~~l~~l~~~~~~~-~L~~L~l~~n-------~~~~l~~--~~l~~L~~L~l~~n~~~~~~~~~~~~~L~~ 351 (570)
T 2z63_A 282 TNVSSFSLVSVTIERVKDFSYNF-GWQHLELVNC-------KFGQFPT--LKLKSLKRLTFTSNKGGNAFSEVDLPSLEF 351 (570)
T ss_dssp TTCSEEEEESCEECSCCBCCSCC-CCSEEEEESC-------BCSSCCB--CBCSSCCEEEEESCBSCCBCCCCBCTTCCE
T ss_pred CcccEEEecCccchhhhhhhccC-CccEEeeccC-------cccccCc--ccccccCEEeCcCCccccccccccCCCCCE
Confidence 45556666665555555555555 6666666665 4455554 355566666655 23444555
Q ss_pred eEecCccCCCccccccccccccccCcccccCCCCCCChhHHHHhhccCCCCCCeEEEEeeccCCCcchhhhhchhhHHHH
Q 047321 537 FVVGGGVDGSNTCRLESLKNLQLLRECGIEGLGNVSHLDEAERLQLYNQQNLLRLRLRFGRVVDGEDEERRRKNEKDKQL 616 (807)
Q Consensus 537 l~~~~~~~~~~~~~i~~L~~L~~L~~L~i~~l~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~ 616 (807)
++++.+.+...+.....+..+.+|+.|.+.+.. +.. . ...+.++++|+.|+++.|.+.
T Consensus 352 L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~-l~~---~-~~~~~~l~~L~~L~l~~n~l~----------------- 409 (570)
T 2z63_A 352 LDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNG-VIT---M-SSNFLGLEQLEHLDFQHSNLK----------------- 409 (570)
T ss_dssp EECCSSCCBEEEEEEHHHHTCSCCCEEECCSCS-EEE---E-EEEEETCTTCCEEECTTSEEE-----------------
T ss_pred EeCcCCccCccccccccccccCccCEEECCCCc-ccc---c-cccccccCCCCEEEccCCccc-----------------
Confidence 555444321111112223344444444444311 000 0 011445555555555544421
Q ss_pred HHhhcCCCCCCC--CCCCcc-cceEeccCCcCceeeCcccCCCCCCCCCCCCCCCCCCccccCcccccccccCCCccc--
Q 047321 617 LEALQPPLSHLP--PLGKLP-LKKLELRDLESVKRVGNEFLGIEESSEDDPSSSSSSPSVIAFPKLKSLEIDGMKELE-- 691 (807)
Q Consensus 617 l~~l~p~~~~lp--~l~~L~-L~~L~L~~~~~l~~i~~~~~~~~~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~-- 691 (807)
...| .++.++ |++|+++++. +..+. +..+..+++|+.|+++++. +.
T Consensus 410 --------~~~~~~~~~~l~~L~~L~l~~n~-l~~~~-------------------~~~~~~l~~L~~L~l~~n~-l~~~ 460 (570)
T 2z63_A 410 --------QMSEFSVFLSLRNLIYLDISHTH-TRVAF-------------------NGIFNGLSSLEVLKMAGNS-FQEN 460 (570)
T ss_dssp --------SCTTSCTTTTCTTCCEEECTTSC-CEECC-------------------TTTTTTCTTCCEEECTTCE-EGGG
T ss_pred --------cccchhhhhcCCCCCEEeCcCCc-ccccc-------------------hhhhhcCCcCcEEECcCCc-Cccc
Confidence 1111 245556 6666666543 22221 1124478888999888864 32
Q ss_pred cchhhhccccCCCCCCcccEEEEccCCCCCCC-cccccCCCCccEEeeccCcccccccccccccCCCCCCCCeeeeccCC
Q 047321 692 EWNYRITRKENISIMPRLSSLQIMNCRKLKAL-PDYLLQTIALQKLSIYSCDLLEELPILEDRRTTDIPRLSSLAIWYCP 770 (807)
Q Consensus 692 ~~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~l-p~~l~~l~~L~~L~l~~c~~l~~lP~~~~~~~~~l~~L~~L~i~~c~ 770 (807)
.++ ..+..+++|+.|++++| .+..+ |..+..+++|++|++++| .+..+|. ..+..+++|+.|++++|+
T Consensus 461 ~~p------~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~---~~~~~l~~L~~L~l~~N~ 529 (570)
T 2z63_A 461 FLP------DIFTELRNLTFLDLSQC-QLEQLSPTAFNSLSSLQVLNMASN-QLKSVPD---GIFDRLTSLQKIWLHTNP 529 (570)
T ss_dssp EEC------SCCTTCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEECCSS-CCSCCCT---TTTTTCTTCCEEECCSSC
T ss_pred cch------hhhhcccCCCEEECCCC-ccccCChhhhhcccCCCEEeCCCC-cCCCCCH---HHhhcccCCcEEEecCCc
Confidence 233 35667889999999888 55555 777888889999999886 4666551 456788889999998876
Q ss_pred CcccCC
Q 047321 771 KLKVLP 776 (807)
Q Consensus 771 ~l~~lP 776 (807)
.....|
T Consensus 530 ~~~~~~ 535 (570)
T 2z63_A 530 WDCSCP 535 (570)
T ss_dssp BCCCTT
T ss_pred ccCCCc
Confidence 555544
No 55
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.60 E-value=7.2e-15 Score=169.27 Aligned_cols=114 Identities=18% Similarity=0.079 Sum_probs=87.4
Q ss_pred eEEEEEeeccCCCCccccCCCCceeEEEeCCCCCCCCCCCCcccc-ccccCcccceeeecc------------ccCCccC
Q 047321 469 VRHLGLKFEEGASFPMSIHGLNRLRTLLIYDQSPYNPSLSSSILP-ELFNKLACLRALVIR------------QSLRTLE 535 (807)
Q Consensus 469 ~r~L~l~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~l~~~i~~LP-~~i~~L~~L~~LdL~------------~~L~~L~ 535 (807)
.++++++++.++.+|..+. ++|++|++++| .+..+| ..++++++|++|+|+ .++..|+
T Consensus 33 ~~~l~ls~~~L~~ip~~~~--~~L~~L~Ls~N-------~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~ 103 (562)
T 3a79_B 33 ESMVDYSNRNLTHVPKDLP--PRTKALSLSQN-------SISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLE 103 (562)
T ss_dssp CCEEECTTSCCCSCCTTSC--TTCCEEECCSS-------CCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCC
T ss_pred CcEEEcCCCCCccCCCCCC--CCcCEEECCCC-------CccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCC
Confidence 4899999999998888765 89999999998 788886 689999999999998 5678899
Q ss_pred eeEecCccCCCccccccccccccccCcccccCCCCCCChhHHHHhhccCCCCCCeEEEEeeccC
Q 047321 536 KFVVGGGVDGSNTCRLESLKNLQLLRECGIEGLGNVSHLDEAERLQLYNQQNLLRLRLRFGRVV 599 (807)
Q Consensus 536 ~l~~~~~~~~~~~~~i~~L~~L~~L~~L~i~~l~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~ 599 (807)
.++++.+.+. .++.. .+.+|+.|.+++-. +.... .+..+.++++|+.|+++.|.+.
T Consensus 104 ~L~Ls~N~l~----~lp~~-~l~~L~~L~Ls~N~-l~~l~--~p~~~~~l~~L~~L~L~~n~l~ 159 (562)
T 3a79_B 104 YLDVSHNRLQ----NISCC-PMASLRHLDLSFND-FDVLP--VCKEFGNLTKLTFLGLSAAKFR 159 (562)
T ss_dssp EEECTTSCCC----EECSC-CCTTCSEEECCSSC-CSBCC--CCGGGGGCTTCCEEEEECSBCC
T ss_pred EEECCCCcCC----ccCcc-ccccCCEEECCCCC-ccccC--chHhhcccCcccEEecCCCccc
Confidence 9999988743 22222 67778887776522 11100 1135788999999999999864
No 56
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.60 E-value=5.3e-16 Score=164.45 Aligned_cols=227 Identities=16% Similarity=0.131 Sum_probs=168.7
Q ss_pred CceeEEEeCCCCCCCCCCCCc---cccccccCcccceeeeccc-c-CCccCeeEecCccCCCccccccccccccccCccc
Q 047321 490 NRLRTLLIYDQSPYNPSLSSS---ILPELFNKLACLRALVIRQ-S-LRTLEKFVVGGGVDGSNTCRLESLKNLQLLRECG 564 (807)
Q Consensus 490 ~~Lr~L~l~~~~~~~l~~~i~---~LP~~i~~L~~L~~LdL~~-~-L~~L~~l~~~~~~~~~~~~~i~~L~~L~~L~~L~ 564 (807)
.+++.|+++++ .+. .+|..++++++|++|+++. + +. +..+..+.++.+|+.|.
T Consensus 50 ~~l~~L~L~~~-------~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~---------------~~~p~~l~~l~~L~~L~ 107 (313)
T 1ogq_A 50 YRVNNLDLSGL-------NLPKPYPIPSSLANLPYLNFLYIGGINNLV---------------GPIPPAIAKLTQLHYLY 107 (313)
T ss_dssp CCEEEEEEECC-------CCSSCEECCGGGGGCTTCSEEEEEEETTEE---------------SCCCGGGGGCTTCSEEE
T ss_pred ceEEEEECCCC-------CccCCcccChhHhCCCCCCeeeCCCCCccc---------------ccCChhHhcCCCCCEEE
Confidence 58999999998 555 6899999999999999972 2 11 12344567778888877
Q ss_pred ccCCCCCCChhHHHHhhccCCCCCCeEEEEeeccCCCcchhhhhchhhHHHHHHhhcCCCCCCCC-CCCcc-cceEeccC
Q 047321 565 IEGLGNVSHLDEAERLQLYNQQNLLRLRLRFGRVVDGEDEERRRKNEKDKQLLEALQPPLSHLPP-LGKLP-LKKLELRD 642 (807)
Q Consensus 565 i~~l~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~l~p~~~~lp~-l~~L~-L~~L~L~~ 642 (807)
+.+.. +....+..+.++++|++|+++.|.+. ..+|. ++.++ |++|++++
T Consensus 108 Ls~n~----l~~~~p~~~~~l~~L~~L~Ls~N~l~-------------------------~~~p~~~~~l~~L~~L~L~~ 158 (313)
T 1ogq_A 108 ITHTN----VSGAIPDFLSQIKTLVTLDFSYNALS-------------------------GTLPPSISSLPNLVGITFDG 158 (313)
T ss_dssp EEEEC----CEEECCGGGGGCTTCCEEECCSSEEE-------------------------SCCCGGGGGCTTCCEEECCS
T ss_pred CcCCe----eCCcCCHHHhCCCCCCEEeCCCCccC-------------------------CcCChHHhcCCCCCeEECcC
Confidence 76521 11122235788999999999988741 24554 78889 99999998
Q ss_pred CcCceeeCcccCCCCCCCCCCCCCCCCCCccccCc-ccccccccCCCccc-cchhhhccccCCCCCCcccEEEEccCCCC
Q 047321 643 LESVKRVGNEFLGIEESSEDDPSSSSSSPSVIAFP-KLKSLEIDGMKELE-EWNYRITRKENISIMPRLSSLQIMNCRKL 720 (807)
Q Consensus 643 ~~~l~~i~~~~~~~~~l~~~~~~~~~~~~~~~~l~-~L~~L~l~~~~~l~-~~~~~~~~~~~~~~l~~L~~L~l~~c~~L 720 (807)
+.....++.. +..++ +|+.|+++++ .+. ..+. .+..++ |+.|++++|.--
T Consensus 159 N~l~~~~p~~--------------------l~~l~~~L~~L~L~~N-~l~~~~~~------~~~~l~-L~~L~Ls~N~l~ 210 (313)
T 1ogq_A 159 NRISGAIPDS--------------------YGSFSKLFTSMTISRN-RLTGKIPP------TFANLN-LAFVDLSRNMLE 210 (313)
T ss_dssp SCCEEECCGG--------------------GGCCCTTCCEEECCSS-EEEEECCG------GGGGCC-CSEEECCSSEEE
T ss_pred CcccCcCCHH--------------------HhhhhhcCcEEECcCC-eeeccCCh------HHhCCc-ccEEECcCCccc
Confidence 6533355543 34666 8999999986 444 3333 344555 999999999444
Q ss_pred CCCcccccCCCCccEEeeccCcccccccccccccCCCCCCCCeeeeccCCCcccCCccCCCCCcccccccccchhhhhhh
Q 047321 721 KALPDYLLQTIALQKLSIYSCDLLEELPILEDRRTTDIPRLSSLAIWYCPKLKVLPDYLLRTTTLQAGEQDYENEKFSQR 800 (807)
Q Consensus 721 ~~lp~~l~~l~~L~~L~l~~c~~l~~lP~~~~~~~~~l~~L~~L~i~~c~~l~~lP~~l~~l~~L~~L~l~~~~~~~~~~ 800 (807)
...|..+..+++|+.|++++|.....+| .+..+++|++|++++|.....+|..+..+++|+.|++++|++....|
T Consensus 211 ~~~~~~~~~l~~L~~L~L~~N~l~~~~~-----~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip 285 (313)
T 1ogq_A 211 GDASVLFGSDKNTQKIHLAKNSLAFDLG-----KVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIP 285 (313)
T ss_dssp ECCGGGCCTTSCCSEEECCSSEECCBGG-----GCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECC
T ss_pred CcCCHHHhcCCCCCEEECCCCceeeecC-----cccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCC
Confidence 4678888999999999999975433444 46789999999999977666899999999999999999999875544
No 57
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.60 E-value=5.6e-15 Score=174.40 Aligned_cols=88 Identities=13% Similarity=0.097 Sum_probs=42.9
Q ss_pred CCCCcccEEEEccCCCCCCCccc-ccCCCCccEEeeccCcccccccccccccCCCCCCCCeeeeccCCCcccCCc-cCC-
Q 047321 704 SIMPRLSSLQIMNCRKLKALPDY-LLQTIALQKLSIYSCDLLEELPILEDRRTTDIPRLSSLAIWYCPKLKVLPD-YLL- 780 (807)
Q Consensus 704 ~~l~~L~~L~l~~c~~L~~lp~~-l~~l~~L~~L~l~~c~~l~~lP~~~~~~~~~l~~L~~L~i~~c~~l~~lP~-~l~- 780 (807)
..+++|+.|++++| .+..+|.. +..+++|+.|+++++ .+..+|. ..+..+++|+.|++++| .++.+|. .+.
T Consensus 533 ~~l~~L~~L~L~~N-~l~~i~~~~~~~l~~L~~L~Ls~N-~l~~l~~---~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~ 606 (680)
T 1ziw_A 533 KGLSHLHILNLESN-GFDEIPVEVFKDLFELKIIDLGLN-NLNTLPA---SVFNNQVSLKSLNLQKN-LITSVEKKVFGP 606 (680)
T ss_dssp TTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS-CCCCCCT---TTTTTCTTCCEEECTTS-CCCBCCHHHHHH
T ss_pred cCCCCCCEEECCCC-CCCCCCHHHcccccCcceeECCCC-CCCcCCH---hHhCCCCCCCEEECCCC-cCCccChhHhcc
Confidence 34555555555555 44455532 455555555555542 4444441 12345555555555553 3444442 222
Q ss_pred CCCcccccccccchhhh
Q 047321 781 RTTTLQAGEQDYENEKF 797 (807)
Q Consensus 781 ~l~~L~~L~l~~~~~~~ 797 (807)
.+++|+.+++++|++..
T Consensus 607 ~~~~L~~l~l~~N~~~c 623 (680)
T 1ziw_A 607 AFRNLTELDMRFNPFDC 623 (680)
T ss_dssp HHTTCSEEECTTCCCCB
T ss_pred cccccCEEEccCCCccc
Confidence 34555555555555543
No 58
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.60 E-value=7.2e-15 Score=153.58 Aligned_cols=222 Identities=17% Similarity=0.210 Sum_probs=128.6
Q ss_pred EEEEEeeccCCCCccccCCCCceeEEEeCCCCCCCCCCCCcccc-ccccCcccceeeeccccCCccCeeEecCccCCCcc
Q 047321 470 RHLGLKFEEGASFPMSIHGLNRLRTLLIYDQSPYNPSLSSSILP-ELFNKLACLRALVIRQSLRTLEKFVVGGGVDGSNT 548 (807)
Q Consensus 470 r~L~l~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~l~~~i~~LP-~~i~~L~~L~~LdL~~~L~~L~~l~~~~~~~~~~~ 548 (807)
+.++...+.+..+|..+ .++|++|+++++ .+..+| ..++++++|++|+++.+ .+..+
T Consensus 14 ~~~~c~~~~l~~ip~~~--~~~l~~L~l~~n-------~i~~~~~~~~~~~~~L~~L~l~~n--~l~~~----------- 71 (285)
T 1ozn_A 14 VTTSCPQQGLQAVPVGI--PAASQRIFLHGN-------RISHVPAASFRACRNLTILWLHSN--VLARI----------- 71 (285)
T ss_dssp CEEECCSSCCSSCCTTC--CTTCSEEECTTS-------CCCEECTTTTTTCTTCCEEECCSS--CCCEE-----------
T ss_pred eEEEcCcCCcccCCcCC--CCCceEEEeeCC-------cCCccCHHHcccCCCCCEEECCCC--cccee-----------
Confidence 56666777777677654 468888998887 677776 46888888888888622 01100
Q ss_pred ccccccccccccCcccccCCCCCCChhHHHHhhccCCCCCCeEEEEeec-cCCCcchhhhhchhhHHHHHHhhcCCCCCC
Q 047321 549 CRLESLKNLQLLRECGIEGLGNVSHLDEAERLQLYNQQNLLRLRLRFGR-VVDGEDEERRRKNEKDKQLLEALQPPLSHL 627 (807)
Q Consensus 549 ~~i~~L~~L~~L~~L~i~~l~~~~~~~~~~~~~l~~l~~L~~L~L~~~~-~~~~~~~~~~~~~~~~~~~l~~l~p~~~~l 627 (807)
... .+.++++|+.|++++|. + ..+
T Consensus 72 -~~~----------------------------~~~~l~~L~~L~l~~n~~l--------------------------~~~ 96 (285)
T 1ozn_A 72 -DAA----------------------------AFTGLALLEQLDLSDNAQL--------------------------RSV 96 (285)
T ss_dssp -CTT----------------------------TTTTCTTCCEEECCSCTTC--------------------------CCC
T ss_pred -CHh----------------------------hcCCccCCCEEeCCCCCCc--------------------------ccc
Confidence 011 23344556666665553 2 122
Q ss_pred -C-CCCCcc-cceEeccCCcCceeeCcccCCCCCCCCCCCCCCCCCCccccCcccccccccCCCccccchhhhccccCCC
Q 047321 628 -P-PLGKLP-LKKLELRDLESVKRVGNEFLGIEESSEDDPSSSSSSPSVIAFPKLKSLEIDGMKELEEWNYRITRKENIS 704 (807)
Q Consensus 628 -p-~l~~L~-L~~L~L~~~~~l~~i~~~~~~~~~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~ 704 (807)
| .++.++ |++|+++++. +..++.. .+..+++|+.|+++++ .+..++. ..+.
T Consensus 97 ~~~~~~~l~~L~~L~l~~n~-l~~~~~~-------------------~~~~l~~L~~L~l~~n-~l~~~~~-----~~~~ 150 (285)
T 1ozn_A 97 DPATFHGLGRLHTLHLDRCG-LQELGPG-------------------LFRGLAALQYLYLQDN-ALQALPD-----DTFR 150 (285)
T ss_dssp CTTTTTTCTTCCEEECTTSC-CCCCCTT-------------------TTTTCTTCCEEECCSS-CCCCCCT-----TTTT
T ss_pred CHHHhcCCcCCCEEECCCCc-CCEECHh-------------------HhhCCcCCCEEECCCC-cccccCH-----hHhc
Confidence 1 245566 6666666543 3322211 1235666677776664 3444432 2344
Q ss_pred CCCcccEEEEccCCCCCCCccc-ccCCCCccEEeeccCcccccc-cccccccCCCCCCCCeeeeccCCCcccCC-ccCCC
Q 047321 705 IMPRLSSLQIMNCRKLKALPDY-LLQTIALQKLSIYSCDLLEEL-PILEDRRTTDIPRLSSLAIWYCPKLKVLP-DYLLR 781 (807)
Q Consensus 705 ~l~~L~~L~l~~c~~L~~lp~~-l~~l~~L~~L~l~~c~~l~~l-P~~~~~~~~~l~~L~~L~i~~c~~l~~lP-~~l~~ 781 (807)
.+++|+.|++++| +++.+|.. +..+++|+.|++++|. +..+ | ..+..+++|+.|++++| .++.+| ..+..
T Consensus 151 ~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~----~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~ 223 (285)
T 1ozn_A 151 DLGNLTHLFLHGN-RISSVPERAFRGLHSLDRLLLHQNR-VAHVHP----HAFRDLGRLMTLYLFAN-NLSALPTEALAP 223 (285)
T ss_dssp TCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSSC-CCEECT----TTTTTCTTCCEEECCSS-CCSCCCHHHHTT
T ss_pred cCCCccEEECCCC-cccccCHHHhcCccccCEEECCCCc-ccccCH----hHccCcccccEeeCCCC-cCCcCCHHHccc
Confidence 5667777777766 56666543 5666777777777654 3333 4 45566677777777764 444555 44666
Q ss_pred CCcccccccccchhhhhhhh
Q 047321 782 TTTLQAGEQDYENEKFSQRI 801 (807)
Q Consensus 782 l~~L~~L~l~~~~~~~~~~~ 801 (807)
+++|+.|++++|++...-+.
T Consensus 224 l~~L~~L~l~~N~~~c~~~~ 243 (285)
T 1ozn_A 224 LRALQYLRLNDNPWVCDCRA 243 (285)
T ss_dssp CTTCCEEECCSSCEECSGGG
T ss_pred CcccCEEeccCCCccCCCCc
Confidence 77777777777766544433
No 59
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.59 E-value=9.4e-16 Score=172.68 Aligned_cols=232 Identities=13% Similarity=0.106 Sum_probs=164.5
Q ss_pred CcceEEEEEeeccCCCC-ccccCCCCceeEEEeCCCCCCCCCCCCccccccccCcccceeeeccccCCccCeeEecCccC
Q 047321 466 GDKVRHLGLKFEEGASF-PMSIHGLNRLRTLLIYDQSPYNPSLSSSILPELFNKLACLRALVIRQSLRTLEKFVVGGGVD 544 (807)
Q Consensus 466 ~~~~r~L~l~~~~~~~~-~~~~~~l~~Lr~L~l~~~~~~~l~~~i~~LP~~i~~L~~L~~LdL~~~L~~L~~l~~~~~~~ 544 (807)
..++++|++++|.+..+ |..|..+++|++|++++| .+..+|. ++.+++|++|+|+.+
T Consensus 33 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N-------~l~~~~~-l~~l~~L~~L~Ls~N-------------- 90 (487)
T 3oja_A 33 AWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSN-------VLYETLD-LESLSTLRTLDLNNN-------------- 90 (487)
T ss_dssp GGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTS-------CCEEEEE-CTTCTTCCEEECCSS--------------
T ss_pred CCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCC-------CCCCCcc-cccCCCCCEEEecCC--------------
Confidence 45789999999988775 467889999999999988 6766665 889999999998722
Q ss_pred CCccccccccccccccCcccccCCCCCCChhHHHHhhccCCCCCCeEEEEeeccCCCcchhhhhchhhHHHHHHhhcCCC
Q 047321 545 GSNTCRLESLKNLQLLRECGIEGLGNVSHLDEAERLQLYNQQNLLRLRLRFGRVVDGEDEERRRKNEKDKQLLEALQPPL 624 (807)
Q Consensus 545 ~~~~~~i~~L~~L~~L~~L~i~~l~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~l~p~~ 624 (807)
.+..+....+|+.|.+.+.. +... ....+++|+.|+|++|.+.
T Consensus 91 -----~l~~l~~~~~L~~L~L~~N~-l~~~------~~~~l~~L~~L~L~~N~l~------------------------- 133 (487)
T 3oja_A 91 -----YVQELLVGPSIETLHAANNN-ISRV------SCSRGQGKKNIYLANNKIT------------------------- 133 (487)
T ss_dssp -----EEEEEEECTTCCEEECCSSC-CCCE------EECCCSSCEEEECCSSCCC-------------------------
T ss_pred -----cCCCCCCCCCcCEEECcCCc-CCCC------CccccCCCCEEECCCCCCC-------------------------
Confidence 23333334556665555421 1111 1234578888888888742
Q ss_pred CCC-C-CCCCcc-cceEeccCCcCcee-eCcccCCCCCCCCCCCCCCCCCCccccCcccccccccCCCccccchhhhccc
Q 047321 625 SHL-P-PLGKLP-LKKLELRDLESVKR-VGNEFLGIEESSEDDPSSSSSSPSVIAFPKLKSLEIDGMKELEEWNYRITRK 700 (807)
Q Consensus 625 ~~l-p-~l~~L~-L~~L~L~~~~~l~~-i~~~~~~~~~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~ 700 (807)
.+ | .++.++ |++|+|+++. +.. .+..+ ...+++|+.|+|+++ .+..++.
T Consensus 134 -~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~l-------------------~~~l~~L~~L~Ls~N-~l~~~~~----- 186 (487)
T 3oja_A 134 -MLRDLDEGCRSRVQYLDLKLNE-IDTVNFAEL-------------------AASSDTLEHLNLQYN-FIYDVKG----- 186 (487)
T ss_dssp -SGGGBCGGGGSSEEEEECTTSC-CCEEEGGGG-------------------GGGTTTCCEEECTTS-CCCEEEC-----
T ss_pred -CCCchhhcCCCCCCEEECCCCC-CCCcChHHH-------------------hhhCCcccEEecCCC-ccccccc-----
Confidence 22 2 256778 9999998754 443 33221 125788999999885 4655543
Q ss_pred cCCCCCCcccEEEEccCCCCCCCcccccCCCCccEEeeccCcccccccccccccCCCCCCCCeeeeccCCCc-ccCCccC
Q 047321 701 ENISIMPRLSSLQIMNCRKLKALPDYLLQTIALQKLSIYSCDLLEELPILEDRRTTDIPRLSSLAIWYCPKL-KVLPDYL 779 (807)
Q Consensus 701 ~~~~~l~~L~~L~l~~c~~L~~lp~~l~~l~~L~~L~l~~c~~l~~lP~~~~~~~~~l~~L~~L~i~~c~~l-~~lP~~l 779 (807)
...+++|+.|++++| .+..+|..+..+++|+.|++++| .+..+| ..+..+++|+.|++++|+.. ..+|..+
T Consensus 187 --~~~l~~L~~L~Ls~N-~l~~~~~~~~~l~~L~~L~Ls~N-~l~~lp----~~l~~l~~L~~L~l~~N~l~c~~~~~~~ 258 (487)
T 3oja_A 187 --QVVFAKLKTLDLSSN-KLAFMGPEFQSAAGVTWISLRNN-KLVLIE----KALRFSQNLEHFDLRGNGFHCGTLRDFF 258 (487)
T ss_dssp --CCCCTTCCEEECCSS-CCCEECGGGGGGTTCSEEECTTS-CCCEEC----TTCCCCTTCCEEECTTCCBCHHHHHHHH
T ss_pred --cccCCCCCEEECCCC-CCCCCCHhHcCCCCccEEEecCC-cCcccc----hhhccCCCCCEEEcCCCCCcCcchHHHH
Confidence 335889999999888 78888888888889999999885 577788 66778888999999887655 4677778
Q ss_pred CCCCcccccccc
Q 047321 780 LRTTTLQAGEQD 791 (807)
Q Consensus 780 ~~l~~L~~L~l~ 791 (807)
..++.|+.++++
T Consensus 259 ~~l~~L~~l~~~ 270 (487)
T 3oja_A 259 SKNQRVQTVAKQ 270 (487)
T ss_dssp TTCHHHHHHHHH
T ss_pred HhCCCCcEEecc
Confidence 888888888775
No 60
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.58 E-value=3.7e-15 Score=163.36 Aligned_cols=250 Identities=16% Similarity=0.128 Sum_probs=161.8
Q ss_pred CCCceeEEEeCCCCCCCCCCCCcccccc-ccCcccceeeecc------------ccCCccCeeEecCccCCCcccccccc
Q 047321 488 GLNRLRTLLIYDQSPYNPSLSSSILPEL-FNKLACLRALVIR------------QSLRTLEKFVVGGGVDGSNTCRLESL 554 (807)
Q Consensus 488 ~l~~Lr~L~l~~~~~~~l~~~i~~LP~~-i~~L~~L~~LdL~------------~~L~~L~~l~~~~~~~~~~~~~i~~L 554 (807)
.+++||+|++.++ .+..+|.. +.++++|++|+++ .++.+|+.+.++.+.+... ....+
T Consensus 43 ~l~~l~~l~l~~~-------~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~--~~~~~ 113 (390)
T 3o6n_A 43 TLNNQKIVTFKNS-------TMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYL--PPHVF 113 (390)
T ss_dssp GGCCCSEEEEESC-------EESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCC--CTTTT
T ss_pred ccCCceEEEecCC-------chhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcC--CHHHh
Confidence 4789999999998 88999976 6899999999998 5667778888877653221 12335
Q ss_pred ccccccCcccccC--CCCCCChhHHHHhhccCCCCCCeEEEEeeccCCCcchhhhhchhhHHHHHHhhcCCCCCCC--CC
Q 047321 555 KNLQLLRECGIEG--LGNVSHLDEAERLQLYNQQNLLRLRLRFGRVVDGEDEERRRKNEKDKQLLEALQPPLSHLP--PL 630 (807)
Q Consensus 555 ~~L~~L~~L~i~~--l~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~l~p~~~~lp--~l 630 (807)
.++.+|+.|.+.+ +..++. ..+.++++|+.|+++.|.+. .++ .+
T Consensus 114 ~~l~~L~~L~L~~n~l~~l~~------~~~~~l~~L~~L~L~~n~l~--------------------------~~~~~~~ 161 (390)
T 3o6n_A 114 QNVPLLTVLVLERNDLSSLPR------GIFHNTPKLTTLSMSNNNLE--------------------------RIEDDTF 161 (390)
T ss_dssp TTCTTCCEEECCSSCCCCCCT------TTTTTCTTCCEEECCSSCCC--------------------------BCCTTTT
T ss_pred cCCCCCCEEECCCCccCcCCH------HHhcCCCCCcEEECCCCccC--------------------------ccChhhc
Confidence 5666677766654 222221 13567888888888887742 222 25
Q ss_pred CCcc-cceEeccCCcCceeeCcc-cCCCCC-------------------CCCCCCCCCCCCCccccCcccccccccCCCc
Q 047321 631 GKLP-LKKLELRDLESVKRVGNE-FLGIEE-------------------SSEDDPSSSSSSPSVIAFPKLKSLEIDGMKE 689 (807)
Q Consensus 631 ~~L~-L~~L~L~~~~~l~~i~~~-~~~~~~-------------------l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~ 689 (807)
+.++ |++|+++++. ++.++.. +..... |.+.++.....+ ...+++|+.|+++++ .
T Consensus 162 ~~l~~L~~L~l~~n~-l~~~~~~~l~~L~~L~l~~n~l~~~~~~~~L~~L~l~~n~l~~~~--~~~~~~L~~L~l~~n-~ 237 (390)
T 3o6n_A 162 QATTSLQNLQLSSNR-LTHVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVR--GPVNVELTILKLQHN-N 237 (390)
T ss_dssp SSCTTCCEEECCSSC-CSBCCGGGCTTCSEEECCSSCCSEEECCSSCSEEECCSSCCCEEE--CCCCSSCCEEECCSS-C
T ss_pred cCCCCCCEEECCCCc-CCccccccccccceeecccccccccCCCCcceEEECCCCeeeecc--ccccccccEEECCCC-C
Confidence 6667 7777777643 3333211 111111 111111111111 113456666666664 3
Q ss_pred cccchhhhccccCCCCCCcccEEEEccCCCCCCC-cccccCCCCccEEeeccCcccccccccccccCCCCCCCCeeeecc
Q 047321 690 LEEWNYRITRKENISIMPRLSSLQIMNCRKLKAL-PDYLLQTIALQKLSIYSCDLLEELPILEDRRTTDIPRLSSLAIWY 768 (807)
Q Consensus 690 l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~l-p~~l~~l~~L~~L~l~~c~~l~~lP~~~~~~~~~l~~L~~L~i~~ 768 (807)
+...+ .+..+++|+.|++++| .+..+ |..+..+++|++|++++| .+..+| ..+..+++|+.|++++
T Consensus 238 l~~~~-------~l~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~----~~~~~l~~L~~L~L~~ 304 (390)
T 3o6n_A 238 LTDTA-------WLLNYPGLVEVDLSYN-ELEKIMYHPFVKMQRLERLYISNN-RLVALN----LYGQPIPTLKVLDLSH 304 (390)
T ss_dssp CCCCG-------GGGGCTTCSEEECCSS-CCCEEESGGGTTCSSCCEEECCSS-CCCEEE----CSSSCCTTCCEEECCS
T ss_pred CcccH-------HHcCCCCccEEECCCC-cCCCcChhHccccccCCEEECCCC-cCcccC----cccCCCCCCCEEECCC
Confidence 33332 2456788888888888 45544 667788888888888885 577777 5566788889998887
Q ss_pred CCCcccCCccCCCCCcccccccccchhh
Q 047321 769 CPKLKVLPDYLLRTTTLQAGEQDYENEK 796 (807)
Q Consensus 769 c~~l~~lP~~l~~l~~L~~L~l~~~~~~ 796 (807)
| .++.+|..+..+++|+.|++++|++.
T Consensus 305 n-~l~~~~~~~~~l~~L~~L~L~~N~i~ 331 (390)
T 3o6n_A 305 N-HLLHVERNQPQFDRLENLYLDHNSIV 331 (390)
T ss_dssp S-CCCCCGGGHHHHTTCSEEECCSSCCC
T ss_pred C-cceecCccccccCcCCEEECCCCccc
Confidence 6 57788877888888889999888874
No 61
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.57 E-value=2.3e-14 Score=172.95 Aligned_cols=276 Identities=18% Similarity=0.130 Sum_probs=169.4
Q ss_pred EEEEEeeccCCCCccccCCCCceeEEEeCCCCCCCCCCCCccc-cccccCcccceeeecc-------------ccCCccC
Q 047321 470 RHLGLKFEEGASFPMSIHGLNRLRTLLIYDQSPYNPSLSSSIL-PELFNKLACLRALVIR-------------QSLRTLE 535 (807)
Q Consensus 470 r~L~l~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~l~~~i~~L-P~~i~~L~~L~~LdL~-------------~~L~~L~ 535 (807)
+.++.++++++.+|. -.++|++|++++| .+..+ |..+.+|++|++|||+ .++.+|+
T Consensus 7 ~~~dcs~~~L~~vP~---lp~~l~~LdLs~N-------~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~ 76 (844)
T 3j0a_A 7 RIAFYRFCNLTQVPQ---VLNTTERLLLSFN-------YIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLR 76 (844)
T ss_dssp EEEEESCCCSSCCCS---SCTTCCEEEEESC-------CCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCC
T ss_pred eEEEccCCCCCCCCC---CCCCcCEEECCCC-------cCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCC
Confidence 456667777777887 4689999999998 77776 7899999999999998 5677889
Q ss_pred eeEecCccCCCccccccccccccccCcccccCCCCCCChhHHHHhhccCCCCCCeEEEEeeccCCCcchhhhhchhhHHH
Q 047321 536 KFVVGGGVDGSNTCRLESLKNLQLLRECGIEGLGNVSHLDEAERLQLYNQQNLLRLRLRFGRVVDGEDEERRRKNEKDKQ 615 (807)
Q Consensus 536 ~l~~~~~~~~~~~~~i~~L~~L~~L~~L~i~~l~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~ 615 (807)
.++++.+.+. ...+..+..|.+|+.|.+.+..-..... ....+.++++|+.|+|+.|.+..
T Consensus 77 ~L~Ls~N~l~--~~~p~~~~~l~~L~~L~Ls~n~l~~~~~--~~~~~~~L~~L~~L~Ls~N~l~~--------------- 137 (844)
T 3j0a_A 77 ILDLGSSKIY--FLHPDAFQGLFHLFELRLYFCGLSDAVL--KDGYFRNLKALTRLDLSKNQIRS--------------- 137 (844)
T ss_dssp EEECTTCCCC--EECTTSSCSCSSCCCEECTTCCCSSCCS--TTCCCSSCSSCCEEEEESCCCCC---------------
T ss_pred EEECCCCcCc--ccCHhHccCCcccCEeeCcCCCCCcccc--cCccccccCCCCEEECCCCcccc---------------
Confidence 9999887632 2234566778888887776532111000 01137889999999999998421
Q ss_pred HHHhhcCCCCCCC-CCCCcc-cceEeccCCcCceee-CcccC-----CCCCCCCCCCCCC-CCCCccccCcc------cc
Q 047321 616 LLEALQPPLSHLP-PLGKLP-LKKLELRDLESVKRV-GNEFL-----GIEESSEDDPSSS-SSSPSVIAFPK------LK 680 (807)
Q Consensus 616 ~l~~l~p~~~~lp-~l~~L~-L~~L~L~~~~~l~~i-~~~~~-----~~~~l~~~~~~~~-~~~~~~~~l~~------L~ 680 (807)
...+ .+++++ |++|+|+++. +..+ +..+. ....+.+..+... ..+..+..+++ |+
T Consensus 138 ---------~~~~~~~~~L~~L~~L~Ls~N~-i~~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~ 207 (844)
T 3j0a_A 138 ---------LYLHPSFGKLNSLKSIDFSSNQ-IFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLE 207 (844)
T ss_dssp ---------CCCCGGGGTCSSCCEEEEESSC-CCCCCSGGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBS
T ss_pred ---------cccchhHhhCCCCCEEECCCCc-CCeeCHHHcccccCCccceEECCCCccccccccchhhcCCccccCcee
Confidence 1122 367888 9999888754 3322 22221 1122222222111 11111122222 55
Q ss_pred cccccCCC-------------------------------------------------------------ccccchhhhcc
Q 047321 681 SLEIDGMK-------------------------------------------------------------ELEEWNYRITR 699 (807)
Q Consensus 681 ~L~l~~~~-------------------------------------------------------------~l~~~~~~~~~ 699 (807)
.|+++++. .+...+
T Consensus 208 ~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~----- 282 (844)
T 3j0a_A 208 ILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLN----- 282 (844)
T ss_dssp EEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEEC-----
T ss_pred EEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCChhhhhccccCCccEEECCCCcccccC-----
Confidence 55554431 111111
Q ss_pred ccCCCCCCcccEEEEccCCCCCCC-cccccCCCCccEEeeccCcccccc-cccccccCCCCCCCCeeeeccCCCcccCC-
Q 047321 700 KENISIMPRLSSLQIMNCRKLKAL-PDYLLQTIALQKLSIYSCDLLEEL-PILEDRRTTDIPRLSSLAIWYCPKLKVLP- 776 (807)
Q Consensus 700 ~~~~~~l~~L~~L~l~~c~~L~~l-p~~l~~l~~L~~L~l~~c~~l~~l-P~~~~~~~~~l~~L~~L~i~~c~~l~~lP- 776 (807)
+..+..+++|+.|++++| ++..+ |..+..+++|++|++++|. +..+ | ..+..+++|+.|++++| .+..+|
T Consensus 283 ~~~~~~l~~L~~L~L~~n-~i~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~----~~~~~l~~L~~L~L~~N-~i~~~~~ 355 (844)
T 3j0a_A 283 SRVFETLKDLKVLNLAYN-KINKIADEAFYGLDNLQVLNLSYNL-LGELYS----SNFYGLPKVAYIDLQKN-HIAIIQD 355 (844)
T ss_dssp SCCSSSCCCCCEEEEESC-CCCEECTTTTTTCSSCCEEEEESCC-CSCCCS----CSCSSCTTCCEEECCSC-CCCCCCS
T ss_pred hhhhhcCCCCCEEECCCC-cCCCCChHHhcCCCCCCEEECCCCC-CCccCH----HHhcCCCCCCEEECCCC-CCCccCh
Confidence 123455677777777776 44443 4456677777777777753 4444 4 56677788888888875 455555
Q ss_pred ccCCCCCcccccccccchhh
Q 047321 777 DYLLRTTTLQAGEQDYENEK 796 (807)
Q Consensus 777 ~~l~~l~~L~~L~l~~~~~~ 796 (807)
..+.++++|+.|++++|.+.
T Consensus 356 ~~~~~l~~L~~L~Ls~N~l~ 375 (844)
T 3j0a_A 356 QTFKFLEKLQTLDLRDNALT 375 (844)
T ss_dssp SCSCSCCCCCEEEEETCCSC
T ss_pred hhhcCCCCCCEEECCCCCCC
Confidence 45777888888888888765
No 62
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.56 E-value=2e-14 Score=160.16 Aligned_cols=221 Identities=18% Similarity=0.236 Sum_probs=166.4
Q ss_pred eeEEEeCCCCCCCCCCCCccccccccCcccceeeeccccCCccCeeEecCccCCCccccccccccccccCcccccCCCCC
Q 047321 492 LRTLLIYDQSPYNPSLSSSILPELFNKLACLRALVIRQSLRTLEKFVVGGGVDGSNTCRLESLKNLQLLRECGIEGLGNV 571 (807)
Q Consensus 492 Lr~L~l~~~~~~~l~~~i~~LP~~i~~L~~L~~LdL~~~L~~L~~l~~~~~~~~~~~~~i~~L~~L~~L~~L~i~~l~~~ 571 (807)
.+.+++.+. .+..+|..+. .+|++|+|+.+ .+..+ ....+.++.+|+.|.+.+.. +
T Consensus 45 ~~~v~c~~~-------~l~~iP~~~~--~~l~~L~L~~n--~i~~~------------~~~~~~~l~~L~~L~Ls~n~-i 100 (440)
T 3zyj_A 45 FSKVICVRK-------NLREVPDGIS--TNTRLLNLHEN--QIQII------------KVNSFKHLRHLEILQLSRNH-I 100 (440)
T ss_dssp SCEEECCSC-------CCSSCCSCCC--TTCSEEECCSC--CCCEE------------CTTTTSSCSSCCEEECCSSC-C
T ss_pred CCEEEeCCC-------CcCcCCCCCC--CCCcEEEccCC--cCCee------------CHHHhhCCCCCCEEECCCCc-C
Confidence 456777766 8899998776 68899998722 11111 12345667777777776521 1
Q ss_pred CChhHHHHhhccCCCCCCeEEEEeeccCCCcchhhhhchhhHHHHHHhhcCCCCCCCC--CCCcc-cceEeccCCcCcee
Q 047321 572 SHLDEAERLQLYNQQNLLRLRLRFGRVVDGEDEERRRKNEKDKQLLEALQPPLSHLPP--LGKLP-LKKLELRDLESVKR 648 (807)
Q Consensus 572 ~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~l~p~~~~lp~--l~~L~-L~~L~L~~~~~l~~ 648 (807)
. ......+.++++|+.|+|+.|.+ ..+|. +..++ |++|+|+++. ++.
T Consensus 101 ~---~i~~~~~~~l~~L~~L~L~~n~l--------------------------~~~~~~~~~~l~~L~~L~L~~N~-i~~ 150 (440)
T 3zyj_A 101 R---TIEIGAFNGLANLNTLELFDNRL--------------------------TTIPNGAFVYLSKLKELWLRNNP-IES 150 (440)
T ss_dssp C---EECGGGGTTCSSCCEEECCSSCC--------------------------SSCCTTTSCSCSSCCEEECCSCC-CCE
T ss_pred C---ccChhhccCCccCCEEECCCCcC--------------------------CeeCHhHhhccccCceeeCCCCc-ccc
Confidence 1 11223578899999999999885 34443 78889 9999999854 666
Q ss_pred eCcccCCCCCCCCCCCCCCCCCCccccCcccccccccCCCccccchhhhccccCCCCCCcccEEEEccCCCCCCCccccc
Q 047321 649 VGNEFLGIEESSEDDPSSSSSSPSVIAFPKLKSLEIDGMKELEEWNYRITRKENISIMPRLSSLQIMNCRKLKALPDYLL 728 (807)
Q Consensus 649 i~~~~~~~~~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~lp~~l~ 728 (807)
++... +..+++|+.|+++++..+..++. ..+..+++|+.|++++| +++.+| .+.
T Consensus 151 ~~~~~-------------------~~~l~~L~~L~l~~~~~l~~i~~-----~~~~~l~~L~~L~L~~n-~l~~~~-~~~ 204 (440)
T 3zyj_A 151 IPSYA-------------------FNRIPSLRRLDLGELKRLSYISE-----GAFEGLSNLRYLNLAMC-NLREIP-NLT 204 (440)
T ss_dssp ECTTT-------------------TTTCTTCCEEECCCCTTCCEECT-----TTTTTCSSCCEEECTTS-CCSSCC-CCT
T ss_pred cCHHH-------------------hhhCcccCEeCCCCCCCcceeCc-----chhhcccccCeecCCCC-cCcccc-ccC
Confidence 65432 34789999999999888877764 45678999999999999 889998 588
Q ss_pred CCCCccEEeeccCcccccc-cccccccCCCCCCCCeeeeccCCCcccCCccCCCCCcccccccccchhhh
Q 047321 729 QTIALQKLSIYSCDLLEEL-PILEDRRTTDIPRLSSLAIWYCPKLKVLPDYLLRTTTLQAGEQDYENEKF 797 (807)
Q Consensus 729 ~l~~L~~L~l~~c~~l~~l-P~~~~~~~~~l~~L~~L~i~~c~~l~~lP~~l~~l~~L~~L~l~~~~~~~ 797 (807)
.+++|++|+|++| .+..+ | ..+..+++|+.|++++|..-...|..+.++++|+.|++++|++..
T Consensus 205 ~l~~L~~L~Ls~N-~l~~~~~----~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 269 (440)
T 3zyj_A 205 PLIKLDELDLSGN-HLSAIRP----GSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTL 269 (440)
T ss_dssp TCSSCCEEECTTS-CCCEECT----TTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCC
T ss_pred CCcccCEEECCCC-ccCccCh----hhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCc
Confidence 8999999999997 56555 4 678899999999999865444445788999999999999998863
No 63
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.56 E-value=1.8e-14 Score=161.19 Aligned_cols=221 Identities=16% Similarity=0.207 Sum_probs=166.1
Q ss_pred eeEEEeCCCCCCCCCCCCccccccccCcccceeeeccccCCccCeeEecCccCCCccccccccccccccCcccccCCCCC
Q 047321 492 LRTLLIYDQSPYNPSLSSSILPELFNKLACLRALVIRQSLRTLEKFVVGGGVDGSNTCRLESLKNLQLLRECGIEGLGNV 571 (807)
Q Consensus 492 Lr~L~l~~~~~~~l~~~i~~LP~~i~~L~~L~~LdL~~~L~~L~~l~~~~~~~~~~~~~i~~L~~L~~L~~L~i~~l~~~ 571 (807)
.+.+++.+. .+..+|..+. .+|++|+|+.+ .+..+ ....+.++.+|+.|.+.+. .+
T Consensus 56 ~~~v~c~~~-------~l~~iP~~~~--~~l~~L~L~~n--~i~~~------------~~~~~~~l~~L~~L~Ls~n-~i 111 (452)
T 3zyi_A 56 FSKVVCTRR-------GLSEVPQGIP--SNTRYLNLMEN--NIQMI------------QADTFRHLHHLEVLQLGRN-SI 111 (452)
T ss_dssp SCEEECCSS-------CCSSCCSCCC--TTCSEEECCSS--CCCEE------------CTTTTTTCTTCCEEECCSS-CC
T ss_pred CcEEEECCC-------CcCccCCCCC--CCccEEECcCC--cCceE------------CHHHcCCCCCCCEEECCCC-cc
Confidence 456777765 7888998776 68999999732 11111 1234566777777776652 11
Q ss_pred CChhHHHHhhccCCCCCCeEEEEeeccCCCcchhhhhchhhHHHHHHhhcCCCCCCCC--CCCcc-cceEeccCCcCcee
Q 047321 572 SHLDEAERLQLYNQQNLLRLRLRFGRVVDGEDEERRRKNEKDKQLLEALQPPLSHLPP--LGKLP-LKKLELRDLESVKR 648 (807)
Q Consensus 572 ~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~l~p~~~~lp~--l~~L~-L~~L~L~~~~~l~~ 648 (807)
. ......+.++++|+.|+|+.|.+ ..+|. ++.++ |++|+|+++. ++.
T Consensus 112 ~---~~~~~~~~~l~~L~~L~L~~n~l--------------------------~~~~~~~~~~l~~L~~L~L~~N~-l~~ 161 (452)
T 3zyi_A 112 R---QIEVGAFNGLASLNTLELFDNWL--------------------------TVIPSGAFEYLSKLRELWLRNNP-IES 161 (452)
T ss_dssp C---EECTTTTTTCTTCCEEECCSSCC--------------------------SBCCTTTSSSCTTCCEEECCSCC-CCE
T ss_pred C---CcChhhccCcccCCEEECCCCcC--------------------------CccChhhhcccCCCCEEECCCCC-cce
Confidence 1 11223578899999999999885 33443 77889 9999999854 666
Q ss_pred eCcccCCCCCCCCCCCCCCCCCCccccCcccccccccCCCccccchhhhccccCCCCCCcccEEEEccCCCCCCCccccc
Q 047321 649 VGNEFLGIEESSEDDPSSSSSSPSVIAFPKLKSLEIDGMKELEEWNYRITRKENISIMPRLSSLQIMNCRKLKALPDYLL 728 (807)
Q Consensus 649 i~~~~~~~~~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~lp~~l~ 728 (807)
++... +..+++|+.|++++|..+..++. ..+..+++|+.|++++| ++..+| .+.
T Consensus 162 ~~~~~-------------------~~~l~~L~~L~l~~~~~l~~i~~-----~~~~~l~~L~~L~L~~n-~l~~~~-~~~ 215 (452)
T 3zyi_A 162 IPSYA-------------------FNRVPSLMRLDLGELKKLEYISE-----GAFEGLFNLKYLNLGMC-NIKDMP-NLT 215 (452)
T ss_dssp ECTTT-------------------TTTCTTCCEEECCCCTTCCEECT-----TTTTTCTTCCEEECTTS-CCSSCC-CCT
T ss_pred eCHhH-------------------HhcCCcccEEeCCCCCCccccCh-----hhccCCCCCCEEECCCC-cccccc-ccc
Confidence 65432 34789999999999988888765 45678999999999999 788888 588
Q ss_pred CCCCccEEeeccCcccccc-cccccccCCCCCCCCeeeeccCCCcccCCccCCCCCcccccccccchhhh
Q 047321 729 QTIALQKLSIYSCDLLEEL-PILEDRRTTDIPRLSSLAIWYCPKLKVLPDYLLRTTTLQAGEQDYENEKF 797 (807)
Q Consensus 729 ~l~~L~~L~l~~c~~l~~l-P~~~~~~~~~l~~L~~L~i~~c~~l~~lP~~l~~l~~L~~L~l~~~~~~~ 797 (807)
.+++|++|++++|. +..+ | ..+.++++|+.|++++|......|..+..+++|+.|++++|++..
T Consensus 216 ~l~~L~~L~Ls~N~-l~~~~~----~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 280 (452)
T 3zyi_A 216 PLVGLEELEMSGNH-FPEIRP----GSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSS 280 (452)
T ss_dssp TCTTCCEEECTTSC-CSEECG----GGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSC
T ss_pred ccccccEEECcCCc-CcccCc----ccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCc
Confidence 89999999999975 5554 5 678899999999999866544456889999999999999998863
No 64
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.56 E-value=2.4e-14 Score=164.71 Aligned_cols=218 Identities=19% Similarity=0.177 Sum_probs=142.9
Q ss_pred CCcceEEEEEeeccCCCCccccCCCCceeEEEeCCCCCCCCCCCCccccccccCcccceeeecccc-C-------CccCe
Q 047321 465 FGDKVRHLGLKFEEGASFPMSIHGLNRLRTLLIYDQSPYNPSLSSSILPELFNKLACLRALVIRQS-L-------RTLEK 536 (807)
Q Consensus 465 ~~~~~r~L~l~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~l~~~i~~LP~~i~~L~~L~~LdL~~~-L-------~~L~~ 536 (807)
...++++|++++|.++.+|. .+++|++|++++| .+..+|. .+.+|++|+++.| + .+|..
T Consensus 79 ~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N-------~l~~l~~---~l~~L~~L~L~~N~l~~lp~~l~~L~~ 145 (622)
T 3g06_A 79 LPPELRTLEVSGNQLTSLPV---LPPGLLELSIFSN-------PLTHLPA---LPSGLCKLWIFGNQLTSLPVLPPGLQE 145 (622)
T ss_dssp CCTTCCEEEECSCCCSCCCC---CCTTCCEEEECSC-------CCCCCCC---CCTTCCEEECCSSCCSCCCCCCTTCCE
T ss_pred cCCCCCEEEcCCCcCCcCCC---CCCCCCEEECcCC-------cCCCCCC---CCCCcCEEECCCCCCCcCCCCCCCCCE
Confidence 46789999999999988887 6899999999998 8888887 6788999988722 2 33333
Q ss_pred eEecCccCCCccccccccccccccCcccccCCCCCCChhHHHHhhccCCCCCCeEEEEeeccCCCcchhhhhchhhHHHH
Q 047321 537 FVVGGGVDGSNTCRLESLKNLQLLRECGIEGLGNVSHLDEAERLQLYNQQNLLRLRLRFGRVVDGEDEERRRKNEKDKQL 616 (807)
Q Consensus 537 l~~~~~~~~~~~~~i~~L~~L~~L~~L~i~~l~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~ 616 (807)
+.++.+.+. .++ ....+|+.|+++.|.+
T Consensus 146 L~Ls~N~l~------------------------~l~----------~~~~~L~~L~L~~N~l------------------ 173 (622)
T 3g06_A 146 LSVSDNQLA------------------------SLP----------ALPSELCKLWAYNNQL------------------ 173 (622)
T ss_dssp EECCSSCCS------------------------CCC----------CCCTTCCEEECCSSCC------------------
T ss_pred EECcCCcCC------------------------CcC----------CccCCCCEEECCCCCC------------------
Confidence 333333211 111 0123455555555443
Q ss_pred HHhhcCCCCCCCCCCCcc-cceEeccCCcCceeeCcccCCCCCCCCCCCCCCCCCCccccCcccccccccCCCccccchh
Q 047321 617 LEALQPPLSHLPPLGKLP-LKKLELRDLESVKRVGNEFLGIEESSEDDPSSSSSSPSVIAFPKLKSLEIDGMKELEEWNY 695 (807)
Q Consensus 617 l~~l~p~~~~lp~l~~L~-L~~L~L~~~~~l~~i~~~~~~~~~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~ 695 (807)
..+| ..++ |+.|+++++ .++.++.....+..|.+.++.....+. .+++|+.|+++++ .+..++.
T Consensus 174 --------~~l~--~~~~~L~~L~Ls~N-~l~~l~~~~~~L~~L~L~~N~l~~l~~---~~~~L~~L~Ls~N-~L~~lp~ 238 (622)
T 3g06_A 174 --------TSLP--MLPSGLQELSVSDN-QLASLPTLPSELYKLWAYNNRLTSLPA---LPSGLKELIVSGN-RLTSLPV 238 (622)
T ss_dssp --------SCCC--CCCTTCCEEECCSS-CCSCCCCCCTTCCEEECCSSCCSSCCC---CCTTCCEEECCSS-CCSCCCC
T ss_pred --------CCCc--ccCCCCcEEECCCC-CCCCCCCccchhhEEECcCCcccccCC---CCCCCCEEEccCC-ccCcCCC
Confidence 2233 2234 555555543 244444333333333333333333332 4588999999885 6666543
Q ss_pred hhccccCCCCCCcccEEEEccCCCCCCCcccccCCCCccEEeeccCcccccccccccccCCCCCCCCeeeeccCCCcccC
Q 047321 696 RITRKENISIMPRLSSLQIMNCRKLKALPDYLLQTIALQKLSIYSCDLLEELPILEDRRTTDIPRLSSLAIWYCPKLKVL 775 (807)
Q Consensus 696 ~~~~~~~~~~l~~L~~L~l~~c~~L~~lp~~l~~l~~L~~L~l~~c~~l~~lP~~~~~~~~~l~~L~~L~i~~c~~l~~l 775 (807)
.+++|+.|++++| +++.+|. .+++|+.|++++| .+..+| ..+.++++|+.|++++|+.....
T Consensus 239 ---------~l~~L~~L~Ls~N-~L~~lp~---~~~~L~~L~Ls~N-~L~~lp----~~l~~l~~L~~L~L~~N~l~~~~ 300 (622)
T 3g06_A 239 ---------LPSELKELMVSGN-RLTSLPM---LPSGLLSLSVYRN-QLTRLP----ESLIHLSSETTVNLEGNPLSERT 300 (622)
T ss_dssp ---------CCTTCCEEECCSS-CCSCCCC---CCTTCCEEECCSS-CCCSCC----GGGGGSCTTCEEECCSCCCCHHH
T ss_pred ---------CCCcCcEEECCCC-CCCcCCc---ccccCcEEeCCCC-CCCcCC----HHHhhccccCEEEecCCCCCCcC
Confidence 5789999999998 7888986 5789999999996 677888 77888999999999988765555
Q ss_pred CccCC
Q 047321 776 PDYLL 780 (807)
Q Consensus 776 P~~l~ 780 (807)
|..+.
T Consensus 301 ~~~l~ 305 (622)
T 3g06_A 301 LQALR 305 (622)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 54433
No 65
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.53 E-value=1.8e-13 Score=147.47 Aligned_cols=238 Identities=17% Similarity=0.161 Sum_probs=164.3
Q ss_pred EEEEEeeccCCCCccccCCCCceeEEEeCCCCCCCCCCCCccccc-cccCcccceeeecccc-C-CccCeeEecCccCCC
Q 047321 470 RHLGLKFEEGASFPMSIHGLNRLRTLLIYDQSPYNPSLSSSILPE-LFNKLACLRALVIRQS-L-RTLEKFVVGGGVDGS 546 (807)
Q Consensus 470 r~L~l~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~l~~~i~~LP~-~i~~L~~L~~LdL~~~-L-~~L~~l~~~~~~~~~ 546 (807)
+.+.-++++++.+|..+ .+++++|+|++| .++.+|. .+.+|++|++|+|+.+ + ..++.
T Consensus 12 ~~v~C~~~~Lt~iP~~l--~~~l~~L~Ls~N-------~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~---------- 72 (350)
T 4ay9_X 12 RVFLCQESKVTEIPSDL--PRNAIELRFVLT-------KLRVIQKGAFSGFGDLEKIEISQNDVLEVIEA---------- 72 (350)
T ss_dssp TEEEEESTTCCSCCTTC--CTTCSEEEEESC-------CCSEECTTSSTTCTTCCEEEEECCTTCCEECT----------
T ss_pred CEEEecCCCCCccCcCc--CCCCCEEEccCC-------cCCCcCHHHHcCCCCCCEEECcCCCCCCccCh----------
Confidence 34566677777788776 368999999998 8889986 5899999999999733 1 11111
Q ss_pred ccccccccccccccCcccccCCCCCCChhHHHHhhccCCCCCCeEEEEeeccCCCcchhhhhchhhHHHHHHhhcCCCCC
Q 047321 547 NTCRLESLKNLQLLRECGIEGLGNVSHLDEAERLQLYNQQNLLRLRLRFGRVVDGEDEERRRKNEKDKQLLEALQPPLSH 626 (807)
Q Consensus 547 ~~~~i~~L~~L~~L~~L~i~~l~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~l~p~~~~ 626 (807)
..+..|.++..+..+.-+++..+.. ..+.++++|+.|+++.|.+ ..
T Consensus 73 --~~f~~L~~l~~~l~~~~N~l~~l~~------~~f~~l~~L~~L~l~~n~l--------------------------~~ 118 (350)
T 4ay9_X 73 --DVFSNLPKLHEIRIEKANNLLYINP------EAFQNLPNLQYLLISNTGI--------------------------KH 118 (350)
T ss_dssp --TSBCSCTTCCEEEEEEETTCCEECT------TSBCCCTTCCEEEEEEECC--------------------------SS
T ss_pred --hHhhcchhhhhhhcccCCcccccCc------hhhhhcccccccccccccc--------------------------cc
Confidence 1122222222211122233333321 2578899999999999985 34
Q ss_pred CCCC--CCcc-cceEeccCCcCceeeCcccCCCCCCCCCCCCCCCCCCccccCcccccccccCCCccccchhhhccccCC
Q 047321 627 LPPL--GKLP-LKKLELRDLESVKRVGNEFLGIEESSEDDPSSSSSSPSVIAFPKLKSLEIDGMKELEEWNYRITRKENI 703 (807)
Q Consensus 627 lp~l--~~L~-L~~L~L~~~~~l~~i~~~~~~~~~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~ 703 (807)
+|.. .... +..|++.++..+..++...+. .....|+.|++++ +.++.++. ..
T Consensus 119 ~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~------------------~~~~~l~~L~L~~-N~i~~i~~------~~ 173 (350)
T 4ay9_X 119 LPDVHKIHSLQKVLLDIQDNINIHTIERNSFV------------------GLSFESVILWLNK-NGIQEIHN------SA 173 (350)
T ss_dssp CCCCTTCCBSSCEEEEEESCTTCCEECTTSST------------------TSBSSCEEEECCS-SCCCEECT------TS
T ss_pred CCchhhcccchhhhhhhccccccccccccchh------------------hcchhhhhhcccc-ccccCCCh------hh
Confidence 4442 2344 788888887778887654211 1224578888887 46777664 44
Q ss_pred CCCCcccEEEEccCCCCCCCccc-ccCCCCccEEeeccCcccccccccccccCCCCCCCCeeeeccCCCcccCCccCCCC
Q 047321 704 SIMPRLSSLQIMNCRKLKALPDY-LLQTIALQKLSIYSCDLLEELPILEDRRTTDIPRLSSLAIWYCPKLKVLPDYLLRT 782 (807)
Q Consensus 704 ~~l~~L~~L~l~~c~~L~~lp~~-l~~l~~L~~L~l~~c~~l~~lP~~~~~~~~~l~~L~~L~i~~c~~l~~lP~~l~~l 782 (807)
...++|+.|.+.++..++.+|.. +..+++|++|+++++ .+..+| . ..+.+|++|.+.+|+.++.+| .+.++
T Consensus 174 f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N-~l~~lp----~--~~~~~L~~L~~l~~~~l~~lP-~l~~l 245 (350)
T 4ay9_X 174 FNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRT-RIHSLP----S--YGLENLKKLRARSTYNLKKLP-TLEKL 245 (350)
T ss_dssp STTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTS-CCCCCC----S--SSCTTCCEEECTTCTTCCCCC-CTTTC
T ss_pred ccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCC-CcCccC----h--hhhccchHhhhccCCCcCcCC-CchhC
Confidence 45678999999888889999864 578899999999985 688888 3 347788888888889999999 57888
Q ss_pred Ccccccccccc
Q 047321 783 TTLQAGEQDYE 793 (807)
Q Consensus 783 ~~L~~L~l~~~ 793 (807)
++|+.++++++
T Consensus 246 ~~L~~l~l~~~ 256 (350)
T 4ay9_X 246 VALMEASLTYP 256 (350)
T ss_dssp CSCCEEECSCH
T ss_pred cChhhCcCCCC
Confidence 89999888753
No 66
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.53 E-value=1.1e-14 Score=152.10 Aligned_cols=246 Identities=18% Similarity=0.157 Sum_probs=160.1
Q ss_pred CCcceEEEEEeeccCCCCc-cccCCCCceeEEEeCCCCCCCCCCCCccc-cccccCcccceeeecccc--CCccCeeEec
Q 047321 465 FGDKVRHLGLKFEEGASFP-MSIHGLNRLRTLLIYDQSPYNPSLSSSIL-PELFNKLACLRALVIRQS--LRTLEKFVVG 540 (807)
Q Consensus 465 ~~~~~r~L~l~~~~~~~~~-~~~~~l~~Lr~L~l~~~~~~~l~~~i~~L-P~~i~~L~~L~~LdL~~~--L~~L~~l~~~ 540 (807)
.+..+++|+++++.+..++ ..+..+++|++|++++| .+..+ |..++++++|++|+++.+ +..+.
T Consensus 30 ~~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n-------~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~----- 97 (285)
T 1ozn_A 30 IPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSN-------VLARIDAAAFTGLALLEQLDLSDNAQLRSVD----- 97 (285)
T ss_dssp CCTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSS-------CCCEECTTTTTTCTTCCEEECCSCTTCCCCC-----
T ss_pred CCCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCC-------ccceeCHhhcCCccCCCEEeCCCCCCccccC-----
Confidence 4678999999999988765 56899999999999998 67777 788999999999999833 22221
Q ss_pred CccCCCccccccccccccccCcccccCCCCCCChhHHHHhhccCCCCCCeEEEEeeccCCCcchhhhhchhhHHHHHHhh
Q 047321 541 GGVDGSNTCRLESLKNLQLLRECGIEGLGNVSHLDEAERLQLYNQQNLLRLRLRFGRVVDGEDEERRRKNEKDKQLLEAL 620 (807)
Q Consensus 541 ~~~~~~~~~~i~~L~~L~~L~~L~i~~l~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~l 620 (807)
...+..+.+|+.|.+.+.. +.. .....+.++++|+.|++++|.+
T Consensus 98 ----------~~~~~~l~~L~~L~l~~n~-l~~---~~~~~~~~l~~L~~L~l~~n~l---------------------- 141 (285)
T 1ozn_A 98 ----------PATFHGLGRLHTLHLDRCG-LQE---LGPGLFRGLAALQYLYLQDNAL---------------------- 141 (285)
T ss_dssp ----------TTTTTTCTTCCEEECTTSC-CCC---CCTTTTTTCTTCCEEECCSSCC----------------------
T ss_pred ----------HHHhcCCcCCCEEECCCCc-CCE---ECHhHhhCCcCCCEEECCCCcc----------------------
Confidence 2234455666666665421 111 1112467788889998888874
Q ss_pred cCCCCCCCC--CCCcc-cceEeccCCcCceeeCcccCCCCCCCCCCCCCCCCCCccccCcccccccccCCCccccchhhh
Q 047321 621 QPPLSHLPP--LGKLP-LKKLELRDLESVKRVGNEFLGIEESSEDDPSSSSSSPSVIAFPKLKSLEIDGMKELEEWNYRI 697 (807)
Q Consensus 621 ~p~~~~lp~--l~~L~-L~~L~L~~~~~l~~i~~~~~~~~~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~ 697 (807)
..+|. ++.++ |++|+++++ .++.++... +..+++|+.|+++++ .+..+..
T Consensus 142 ----~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~-------------------~~~l~~L~~L~l~~n-~l~~~~~-- 194 (285)
T 1ozn_A 142 ----QALPDDTFRDLGNLTHLFLHGN-RISSVPERA-------------------FRGLHSLDRLLLHQN-RVAHVHP-- 194 (285)
T ss_dssp ----CCCCTTTTTTCTTCCEEECCSS-CCCEECTTT-------------------TTTCTTCCEEECCSS-CCCEECT--
T ss_pred ----cccCHhHhccCCCccEEECCCC-cccccCHHH-------------------hcCccccCEEECCCC-cccccCH--
Confidence 23333 67788 888988875 355555421 336788888888885 4555432
Q ss_pred ccccCCCCCCcccEEEEccCCCCCCCcc-cccCCCCccEEeeccCcccccccccccccCCCCCCCCeeeeccCCCcccCC
Q 047321 698 TRKENISIMPRLSSLQIMNCRKLKALPD-YLLQTIALQKLSIYSCDLLEELPILEDRRTTDIPRLSSLAIWYCPKLKVLP 776 (807)
Q Consensus 698 ~~~~~~~~l~~L~~L~l~~c~~L~~lp~-~l~~l~~L~~L~l~~c~~l~~lP~~~~~~~~~l~~L~~L~i~~c~~l~~lP 776 (807)
..+..+++|+.|++++| .+..+|. .+..+++|+.|++++++-....+ .. ..+..++.+...........|
T Consensus 195 ---~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~-~~----~~~~~l~~~~~~~~~~~c~~p 265 (285)
T 1ozn_A 195 ---HAFRDLGRLMTLYLFAN-NLSALPTEALAPLRALQYLRLNDNPWVCDCR-AR----PLWAWLQKFRGSSSEVPCSLP 265 (285)
T ss_dssp ---TTTTTCTTCCEEECCSS-CCSCCCHHHHTTCTTCCEEECCSSCEECSGG-GH----HHHHHHHHCCSEECCCBEEES
T ss_pred ---hHccCcccccEeeCCCC-cCCcCCHHHcccCcccCEEeccCCCccCCCC-cH----HHHHHHHhcccccCccccCCc
Confidence 35567888899999888 6766764 47788888999888875433322 00 001122333333333334566
Q ss_pred ccCC--CCCcccccccccch
Q 047321 777 DYLL--RTTTLQAGEQDYEN 794 (807)
Q Consensus 777 ~~l~--~l~~L~~L~l~~~~ 794 (807)
..+. .+..+...++++|+
T Consensus 266 ~~l~g~~l~~l~~~~l~~C~ 285 (285)
T 1ozn_A 266 QRLAGRDLKRLAANDLQGCA 285 (285)
T ss_dssp GGGTTCBGGGSCGGGSCCC-
T ss_pred hHhCCcChhhcCHHHhccCC
Confidence 5553 35667777777774
No 67
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.52 E-value=3.6e-13 Score=144.02 Aligned_cols=257 Identities=15% Similarity=0.173 Sum_probs=183.4
Q ss_pred cceEEEEEeeccCCCCccccCCCCceeEEEeCCCCCCCCCCCCcccc-ccccCcccceeeeccccCCccCeeEecCccCC
Q 047321 467 DKVRHLGLKFEEGASFPMSIHGLNRLRTLLIYDQSPYNPSLSSSILP-ELFNKLACLRALVIRQSLRTLEKFVVGGGVDG 545 (807)
Q Consensus 467 ~~~r~L~l~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~l~~~i~~LP-~~i~~L~~L~~LdL~~~L~~L~~l~~~~~~~~ 545 (807)
..++.++++++.+..+|..+. ++|++|++++| .+..+| ..++++++|++|+++.+ .+..+
T Consensus 33 c~l~~l~~~~~~l~~ip~~~~--~~l~~L~l~~n-------~i~~~~~~~~~~l~~L~~L~L~~n--~l~~~-------- 93 (332)
T 2ft3_A 33 CHLRVVQCSDLGLKAVPKEIS--PDTTLLDLQNN-------DISELRKDDFKGLQHLYALVLVNN--KISKI-------- 93 (332)
T ss_dssp EETTEEECCSSCCSSCCSCCC--TTCCEEECCSS-------CCCEECTTTTTTCTTCCEEECCSS--CCCEE--------
T ss_pred ccCCEEECCCCCccccCCCCC--CCCeEEECCCC-------cCCccCHhHhhCCCCCcEEECCCC--ccCcc--------
Confidence 357889999998888887764 79999999998 777774 58999999999999833 11111
Q ss_pred CccccccccccccccCcccccC--CCCCCChhHHHHhhccCCCCCCeEEEEeeccCCCcchhhhhchhhHHHHHHhhcCC
Q 047321 546 SNTCRLESLKNLQLLRECGIEG--LGNVSHLDEAERLQLYNQQNLLRLRLRFGRVVDGEDEERRRKNEKDKQLLEALQPP 623 (807)
Q Consensus 546 ~~~~~i~~L~~L~~L~~L~i~~--l~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~l~p~ 623 (807)
....+..+.+|+.|.+.+ +..++. .+. ++|++|+++.|.+
T Consensus 94 ----~~~~~~~l~~L~~L~L~~n~l~~l~~-------~~~--~~L~~L~l~~n~i------------------------- 135 (332)
T 2ft3_A 94 ----HEKAFSPLRKLQKLYISKNHLVEIPP-------NLP--SSLVELRIHDNRI------------------------- 135 (332)
T ss_dssp ----CGGGSTTCTTCCEEECCSSCCCSCCS-------SCC--TTCCEEECCSSCC-------------------------
T ss_pred ----CHhHhhCcCCCCEEECCCCcCCccCc-------ccc--ccCCEEECCCCcc-------------------------
Confidence 123455666777766654 222221 122 7999999998875
Q ss_pred CCCCCC--CCCcc-cceEeccCCcCcee---eCcccC--CCCCCCCCCCCCCCCCCccccCcccccccccCCCccccchh
Q 047321 624 LSHLPP--LGKLP-LKKLELRDLESVKR---VGNEFL--GIEESSEDDPSSSSSSPSVIAFPKLKSLEIDGMKELEEWNY 695 (807)
Q Consensus 624 ~~~lp~--l~~L~-L~~L~L~~~~~l~~---i~~~~~--~~~~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~ 695 (807)
..+|. ++.++ |+.|+++++. ++. .+..+. ....+.+.++.....|.. .+++|+.|+++++ .+...+.
T Consensus 136 -~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~~~l~L~~L~l~~n~l~~l~~~--~~~~L~~L~l~~n-~i~~~~~ 210 (332)
T 2ft3_A 136 -RKVPKGVFSGLRNMNCIEMGGNP-LENSGFEPGAFDGLKLNYLRISEAKLTGIPKD--LPETLNELHLDHN-KIQAIEL 210 (332)
T ss_dssp -CCCCSGGGSSCSSCCEEECCSCC-CBGGGSCTTSSCSCCCSCCBCCSSBCSSCCSS--SCSSCSCCBCCSS-CCCCCCT
T ss_pred -CccCHhHhCCCccCCEEECCCCc-cccCCCCcccccCCccCEEECcCCCCCccCcc--ccCCCCEEECCCC-cCCccCH
Confidence 34554 77899 9999999854 432 232222 233344444444445543 3479999999985 5655543
Q ss_pred hhccccCCCCCCcccEEEEccCCCCCCCcc-cccCCCCccEEeeccCcccccccccccccCCCCCCCCeeeeccCCCccc
Q 047321 696 RITRKENISIMPRLSSLQIMNCRKLKALPD-YLLQTIALQKLSIYSCDLLEELPILEDRRTTDIPRLSSLAIWYCPKLKV 774 (807)
Q Consensus 696 ~~~~~~~~~~l~~L~~L~l~~c~~L~~lp~-~l~~l~~L~~L~l~~c~~l~~lP~~~~~~~~~l~~L~~L~i~~c~~l~~ 774 (807)
..+..+++|+.|++++| .+..++. .+..+++|++|++++| .+..+| ..+..+++|+.|++++| .++.
T Consensus 211 -----~~l~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N-~l~~lp----~~l~~l~~L~~L~l~~N-~l~~ 278 (332)
T 2ft3_A 211 -----EDLLRYSKLYRLGLGHN-QIRMIENGSLSFLPTLRELHLDNN-KLSRVP----AGLPDLKLLQVVYLHTN-NITK 278 (332)
T ss_dssp -----TSSTTCTTCSCCBCCSS-CCCCCCTTGGGGCTTCCEEECCSS-CCCBCC----TTGGGCTTCCEEECCSS-CCCB
T ss_pred -----HHhcCCCCCCEEECCCC-cCCcCChhHhhCCCCCCEEECCCC-cCeecC----hhhhcCccCCEEECCCC-CCCc
Confidence 35678999999999999 6777754 6888999999999996 678998 67888999999999985 5777
Q ss_pred CC-ccCCC------CCcccccccccchhhh
Q 047321 775 LP-DYLLR------TTTLQAGEQDYENEKF 797 (807)
Q Consensus 775 lP-~~l~~------l~~L~~L~l~~~~~~~ 797 (807)
+| ..+.. .+.|+.|++++|++..
T Consensus 279 ~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~ 308 (332)
T 2ft3_A 279 VGVNDFCPVGFGVKRAYYNGISLFNNPVPY 308 (332)
T ss_dssp CCTTSSSCSSCCSSSCCBSEEECCSSSSCG
T ss_pred cChhHccccccccccccccceEeecCcccc
Confidence 76 33333 4678999999999863
No 68
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.50 E-value=6.6e-14 Score=147.87 Aligned_cols=223 Identities=15% Similarity=0.139 Sum_probs=158.7
Q ss_pred CCcceEEEEEeeccCCCCccc-cCCCCceeEEEeCCCCCCCCCCCCccc---cccccCcccceeeecccc-CCccCeeEe
Q 047321 465 FGDKVRHLGLKFEEGASFPMS-IHGLNRLRTLLIYDQSPYNPSLSSSIL---PELFNKLACLRALVIRQS-LRTLEKFVV 539 (807)
Q Consensus 465 ~~~~~r~L~l~~~~~~~~~~~-~~~l~~Lr~L~l~~~~~~~l~~~i~~L---P~~i~~L~~L~~LdL~~~-L~~L~~l~~ 539 (807)
.+.++++|++++|.+..+|.. |.++++|++|++++| .+..+ |..+..+++|++|+++.+ +..
T Consensus 26 ~~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n-------~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~------ 92 (306)
T 2z66_A 26 IPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSN-------GLSFKGCCSQSDFGTTSLKYLDLSFNGVIT------ 92 (306)
T ss_dssp CCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSS-------CCCEEEEEEHHHHSCSCCCEEECCSCSEEE------
T ss_pred CCCCCCEEECCCCccCccCHhHhhccccCCEEECCCC-------ccCcccCcccccccccccCEEECCCCcccc------
Confidence 357899999999999887765 689999999999998 56554 678888999999999833 111
Q ss_pred cCccCCCccccccccccccccCcccccC--CCCCCChhHHHHhhccCCCCCCeEEEEeeccCCCcchhhhhchhhHHHHH
Q 047321 540 GGGVDGSNTCRLESLKNLQLLRECGIEG--LGNVSHLDEAERLQLYNQQNLLRLRLRFGRVVDGEDEERRRKNEKDKQLL 617 (807)
Q Consensus 540 ~~~~~~~~~~~i~~L~~L~~L~~L~i~~--l~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l 617 (807)
....+..+.+|+.|.+.+ +..+.. ...+.++++|+.|++++|.+.
T Consensus 93 ----------l~~~~~~l~~L~~L~l~~n~l~~~~~-----~~~~~~l~~L~~L~l~~n~l~------------------ 139 (306)
T 2z66_A 93 ----------MSSNFLGLEQLEHLDFQHSNLKQMSE-----FSVFLSLRNLIYLDISHTHTR------------------ 139 (306)
T ss_dssp ----------EEEEEETCTTCCEEECTTSEEESSTT-----TTTTTTCTTCCEEECTTSCCE------------------
T ss_pred ----------ChhhcCCCCCCCEEECCCCccccccc-----chhhhhccCCCEEECCCCcCC------------------
Confidence 112244556666665554 111111 124678899999999988741
Q ss_pred HhhcCCCCCCCC-CCCcc-cceEeccCCcCce-eeCcccCCCCCCCCCCCCCCCCCCccccCcccccccccCCCccccch
Q 047321 618 EALQPPLSHLPP-LGKLP-LKKLELRDLESVK-RVGNEFLGIEESSEDDPSSSSSSPSVIAFPKLKSLEIDGMKELEEWN 694 (807)
Q Consensus 618 ~~l~p~~~~lp~-l~~L~-L~~L~L~~~~~l~-~i~~~~~~~~~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~ 694 (807)
...|. ++.++ |++|+++++.... .++.. +..+++|+.|+++++ .+...+
T Consensus 140 -------~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~--------------------~~~l~~L~~L~Ls~n-~l~~~~ 191 (306)
T 2z66_A 140 -------VAFNGIFNGLSSLEVLKMAGNSFQENFLPDI--------------------FTELRNLTFLDLSQC-QLEQLS 191 (306)
T ss_dssp -------ECSTTTTTTCTTCCEEECTTCEEGGGEECSC--------------------CTTCTTCCEEECTTS-CCCEEC
T ss_pred -------ccchhhcccCcCCCEEECCCCccccccchhH--------------------HhhCcCCCEEECCCC-CcCCcC
Confidence 12222 67788 9999998864222 23322 347899999999986 566553
Q ss_pred hhhccccCCCCCCcccEEEEccCCCCCCCcc-cccCCCCccEEeeccCcccccccccccccCCCCC-CCCeeeeccCCC
Q 047321 695 YRITRKENISIMPRLSSLQIMNCRKLKALPD-YLLQTIALQKLSIYSCDLLEELPILEDRRTTDIP-RLSSLAIWYCPK 771 (807)
Q Consensus 695 ~~~~~~~~~~~l~~L~~L~l~~c~~L~~lp~-~l~~l~~L~~L~l~~c~~l~~lP~~~~~~~~~l~-~L~~L~i~~c~~ 771 (807)
. ..+..+++|+.|++++| .+..+|. .+..+++|+.|++++|......| ..+..++ +|+.|++++|+.
T Consensus 192 ~-----~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~----~~~~~~~~~L~~L~L~~N~~ 260 (306)
T 2z66_A 192 P-----TAFNSLSSLQVLNMSHN-NFFSLDTFPYKCLNSLQVLDYSLNHIMTSKK----QELQHFPSSLAFLNLTQNDF 260 (306)
T ss_dssp T-----TTTTTCTTCCEEECTTS-CCSBCCSGGGTTCTTCCEEECTTSCCCBCSS----SSCCCCCTTCCEEECTTCCE
T ss_pred H-----HHhcCCCCCCEEECCCC-ccCccChhhccCcccCCEeECCCCCCcccCH----HHHHhhhccCCEEEccCCCe
Confidence 2 35667899999999998 6777754 67889999999999986544455 5667774 899999998664
No 69
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.49 E-value=1.7e-13 Score=143.31 Aligned_cols=109 Identities=23% Similarity=0.235 Sum_probs=54.7
Q ss_pred cCcccccccccCCCccccchhhhccccCCCCCCcccEEEEccCCCCCCCccc-ccCCCCccEEeeccCcccccccccccc
Q 047321 675 AFPKLKSLEIDGMKELEEWNYRITRKENISIMPRLSSLQIMNCRKLKALPDY-LLQTIALQKLSIYSCDLLEELPILEDR 753 (807)
Q Consensus 675 ~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~lp~~-l~~l~~L~~L~l~~c~~l~~lP~~~~~ 753 (807)
.+++|+.|+++++ .+..++. ..+..+++|+.|++++| +++.+|.. +..+++|+.|+++++ .+..+|. .
T Consensus 98 ~l~~L~~L~l~~N-~l~~l~~-----~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N-~l~~l~~---~ 166 (290)
T 1p9a_G 98 TLPALTVLDVSFN-RLTSLPL-----GALRGLGELQELYLKGN-ELKTLPPGLLTPTPKLEKLSLANN-NLTELPA---G 166 (290)
T ss_dssp TCTTCCEEECCSS-CCCCCCS-----STTTTCTTCCEEECTTS-CCCCCCTTTTTTCTTCCEEECTTS-CCSCCCT---T
T ss_pred cCCCCCEEECCCC-cCcccCH-----HHHcCCCCCCEEECCCC-CCCccChhhcccccCCCEEECCCC-cCCccCH---H
Confidence 4455555555542 3433332 22344555555555555 45455433 344555555655553 3455541 1
Q ss_pred cCCCCCCCCeeeeccCCCcccCCccCCCCCcccccccccchh
Q 047321 754 RTTDIPRLSSLAIWYCPKLKVLPDYLLRTTTLQAGEQDYENE 795 (807)
Q Consensus 754 ~~~~l~~L~~L~i~~c~~l~~lP~~l~~l~~L~~L~l~~~~~ 795 (807)
.+..+++|+.|++++ +.++.+|..+..++.|+.+++++|++
T Consensus 167 ~~~~l~~L~~L~L~~-N~l~~ip~~~~~~~~L~~l~L~~Np~ 207 (290)
T 1p9a_G 167 LLNGLENLDTLLLQE-NSLYTIPKGFFGSHLLPFAFLHGNPW 207 (290)
T ss_dssp TTTTCTTCCEEECCS-SCCCCCCTTTTTTCCCSEEECCSCCB
T ss_pred HhcCcCCCCEEECCC-CcCCccChhhcccccCCeEEeCCCCc
Confidence 234455555665554 34555555555555566666655554
No 70
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.49 E-value=2.9e-14 Score=153.96 Aligned_cols=232 Identities=17% Similarity=0.161 Sum_probs=163.4
Q ss_pred CcceEEEEEeeccCCCC-ccccCCCCceeEEEeCCCCCCCCCCCCcccccc-ccCcccceeeecccc-CCccCeeEecCc
Q 047321 466 GDKVRHLGLKFEEGASF-PMSIHGLNRLRTLLIYDQSPYNPSLSSSILPEL-FNKLACLRALVIRQS-LRTLEKFVVGGG 542 (807)
Q Consensus 466 ~~~~r~L~l~~~~~~~~-~~~~~~l~~Lr~L~l~~~~~~~l~~~i~~LP~~-i~~L~~L~~LdL~~~-L~~L~~l~~~~~ 542 (807)
..++++|++++|.+..+ +..+.++++|++|++++| .+..+|.. ++++++|++|+++.+ +..++.
T Consensus 75 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n-------~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~------ 141 (353)
T 2z80_A 75 CVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYN-------YLSNLSSSWFKPLSSLTFLNLLGNPYKTLGE------ 141 (353)
T ss_dssp CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS-------CCSSCCHHHHTTCTTCSEEECTTCCCSSSCS------
T ss_pred CCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCC-------cCCcCCHhHhCCCccCCEEECCCCCCcccCc------
Confidence 57899999999998875 567999999999999998 88889876 899999999999833 332221
Q ss_pred cCCCccccccccccccccCcccccCCCCCCChhHHHHhhccCCCCCCeEEEEeeccCCCcchhhhhchhhHHHHHHhhcC
Q 047321 543 VDGSNTCRLESLKNLQLLRECGIEGLGNVSHLDEAERLQLYNQQNLLRLRLRFGRVVDGEDEERRRKNEKDKQLLEALQP 622 (807)
Q Consensus 543 ~~~~~~~~i~~L~~L~~L~~L~i~~l~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~l~p 622 (807)
...+..+.+|+.|.+.+...+... ....+.++++|+.|++++|.+.
T Consensus 142 --------~~~~~~l~~L~~L~l~~n~~~~~~---~~~~~~~l~~L~~L~l~~n~l~----------------------- 187 (353)
T 2z80_A 142 --------TSLFSHLTKLQILRVGNMDTFTKI---QRKDFAGLTFLEELEIDASDLQ----------------------- 187 (353)
T ss_dssp --------SCSCTTCTTCCEEEEEESSSCCEE---CTTTTTTCCEEEEEEEEETTCC-----------------------
T ss_pred --------hhhhccCCCCcEEECCCCcccccc---CHHHccCCCCCCEEECCCCCcC-----------------------
Confidence 023556667777777653222211 1225778999999999998741
Q ss_pred CCCCCC-CCCCcc-cceEeccCCcCceeeCcccCCCCCCCCCCCCCCCCCCccccCcccccccccCCCccccchhhhccc
Q 047321 623 PLSHLP-PLGKLP-LKKLELRDLESVKRVGNEFLGIEESSEDDPSSSSSSPSVIAFPKLKSLEIDGMKELEEWNYRITRK 700 (807)
Q Consensus 623 ~~~~lp-~l~~L~-L~~L~L~~~~~l~~i~~~~~~~~~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~ 700 (807)
...| .++.++ |++|+++++. ++.++..+ ...+++|+.|+++++ .+..++.. ..
T Consensus 188 --~~~~~~l~~l~~L~~L~l~~n~-l~~~~~~~-------------------~~~~~~L~~L~L~~n-~l~~~~~~--~l 242 (353)
T 2z80_A 188 --SYEPKSLKSIQNVSHLILHMKQ-HILLLEIF-------------------VDVTSSVECLELRDT-DLDTFHFS--EL 242 (353)
T ss_dssp --EECTTTTTTCSEEEEEEEECSC-STTHHHHH-------------------HHHTTTEEEEEEESC-BCTTCCCC----
T ss_pred --ccCHHHHhccccCCeecCCCCc-cccchhhh-------------------hhhcccccEEECCCC-cccccccc--cc
Confidence 1122 377889 9999998754 44444321 225899999999985 55544320 00
Q ss_pred cCCCCCCcccEEEEccCCCCC-----CCcccccCCCCccEEeeccCccccccccccccc-CCCCCCCCeeeeccCCCccc
Q 047321 701 ENISIMPRLSSLQIMNCRKLK-----ALPDYLLQTIALQKLSIYSCDLLEELPILEDRR-TTDIPRLSSLAIWYCPKLKV 774 (807)
Q Consensus 701 ~~~~~l~~L~~L~l~~c~~L~-----~lp~~l~~l~~L~~L~l~~c~~l~~lP~~~~~~-~~~l~~L~~L~i~~c~~l~~ 774 (807)
......+.++.+++.++ .+. .+|..+..+++|++|++++| .+..+| .. +..+++|+.|++++|+....
T Consensus 243 ~~~~~~~~l~~l~L~~~-~l~~~~l~~l~~~l~~l~~L~~L~Ls~N-~l~~i~----~~~~~~l~~L~~L~L~~N~~~~~ 316 (353)
T 2z80_A 243 STGETNSLIKKFTFRNV-KITDESLFQVMKLLNQISGLLELEFSRN-QLKSVP----DGIFDRLTSLQKIWLHTNPWDCS 316 (353)
T ss_dssp ----CCCCCCEEEEESC-BCCHHHHHHHHHHHHTCTTCCEEECCSS-CCCCCC----TTTTTTCTTCCEEECCSSCBCCC
T ss_pred ccccccchhhccccccc-cccCcchhhhHHHHhcccCCCEEECCCC-CCCccC----HHHHhcCCCCCEEEeeCCCccCc
Confidence 11234567888888877 343 47778889999999999996 678888 55 47899999999998765443
Q ss_pred C
Q 047321 775 L 775 (807)
Q Consensus 775 l 775 (807)
.
T Consensus 317 ~ 317 (353)
T 2z80_A 317 C 317 (353)
T ss_dssp H
T ss_pred C
Confidence 3
No 71
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=99.48 E-value=5.9e-12 Score=137.72 Aligned_cols=323 Identities=13% Similarity=0.049 Sum_probs=194.3
Q ss_pred CccccccchHHHHHHHHhCCCCCCCCCceEEEEEccCCChHHHHHHHHHcCcccccc-cceEEEEEeCCCCCHHHHHHHH
Q 047321 104 GGVCGRVDEKNELLSKLLCGSSEQQKGLDVISLVGLGGIGKTTLAQLAYNNDEVKRN-FEKVIWVCVSNTFEEISVAKAI 182 (807)
Q Consensus 104 ~~~vGR~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~-f~~~~wv~~~~~~~~~~~~~~i 182 (807)
..++||+++++++.+++.....+..+..+.+.|+|++|+||||||+.+++. .... -...+|+++....+...++..+
T Consensus 17 ~~l~gr~~~~~~l~~~l~~~~~~~~~~~~~~li~G~~G~GKTtl~~~l~~~--~~~~~~~~~~~i~~~~~~~~~~~~~~l 94 (389)
T 1fnn_A 17 KRLPHREQQLQQLDILLGNWLRNPGHHYPRATLLGRPGTGKTVTLRKLWEL--YKDKTTARFVYINGFIYRNFTAIIGEI 94 (389)
T ss_dssp SCCTTCHHHHHHHHHHHHHHHHSTTSSCCEEEEECCTTSSHHHHHHHHHHH--HTTSCCCEEEEEETTTCCSHHHHHHHH
T ss_pred CCCCChHHHHHHHHHHHHHHHcCCCCCCCeEEEECCCCCCHHHHHHHHHHH--HhhhcCeeEEEEeCccCCCHHHHHHHH
Confidence 679999999999999886421100123348999999999999999999873 3222 1246678877888888899999
Q ss_pred HHHcCCCCCC-CccHHHHHHHHHHHHh--CCceEEEEeCCCCCCccChHHHHHhhcCCC----CCcEEEEEcCCHHHHHH
Q 047321 183 IEGLGVSAFG-LSEFESLMKQIQEYIT--GKKIFLVLDDVWDGDYKKWDPFFSCLKNGH----HESKILITTHDRSVALQ 255 (807)
Q Consensus 183 ~~~l~~~~~~-~~~~~~~~~~l~~~l~--~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~----~gs~IliTTR~~~v~~~ 255 (807)
+..++..... ......+...+...+. +++.+||+||++.-+......+...+.... .+..||+||+.......
T Consensus 95 ~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~L~~~~~~~~~~~~~~~~iI~~~~~~~~~~~ 174 (389)
T 1fnn_A 95 ARSLNIPFPRRGLSRDEFLALLVEHLRERDLYMFLVLDDAFNLAPDILSTFIRLGQEADKLGAFRIALVIVGHNDAVLNN 174 (389)
T ss_dssp HHHTTCCCCSSCCCHHHHHHHHHHHHHHTTCCEEEEEETGGGSCHHHHHHHHHHTTCHHHHSSCCEEEEEEESSTHHHHT
T ss_pred HHHhCccCCCCCCCHHHHHHHHHHHHhhcCCeEEEEEECccccchHHHHHHHHHHHhCCCCCcCCEEEEEEECCchHHHH
Confidence 9888654322 2345556666666654 668899999997655555555555553321 36678888887654433
Q ss_pred hCC-------CceEeCCCCChhhHHHHHHHHHhccCCccCccchHHHHHHHHHHc---------CCCHHHHHHHHHH-hh
Q 047321 256 LGS-------IDIIPVKELGEGECWLLFKQIAFLRRSFEDCEKLEPIGRKIASKC---------KGLPLAAKVIGNL-LR 318 (807)
Q Consensus 256 ~~~-------~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~~~~I~~~c---------~glPLai~~~~~~-l~ 318 (807)
+.. ...+.+++++.++..+++...+..... ...--.+....|++.+ +|.|..+..+... ..
T Consensus 175 l~~~~~~r~~~~~i~~~pl~~~~~~~~l~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~~~G~~r~~~~~l~~a~~ 252 (389)
T 1fnn_A 175 LDPSTRGIMGKYVIRFSPYTKDQIFDILLDRAKAGLA--EGSYSEDILQMIADITGAQTPLDTNRGDARLAIDILYRSAY 252 (389)
T ss_dssp SCHHHHHHHTTCEEECCCCBHHHHHHHHHHHHHHHBC--TTSSCHHHHHHHHHHHSBSSTTCTTSCCHHHHHHHHHHHHH
T ss_pred hCHHhhhcCCCceEEeCCCCHHHHHHHHHHHHHhhcC--CCCCCHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHHHHHH
Confidence 221 236999999999999999887642111 0112245678899999 7887554443332 11
Q ss_pred -----cC--CCHHHHHHHHhccccccccCCCCchhhHHhcccCCCCccchhhhhhhhccCC---CcceechhHHHHHHHh
Q 047321 319 -----SK--NTAKEWHIILDSEMWKVQEIGQGILAPLLLSYNDLPSNSMVKRCFSYCAVFP---KDYNMNKRELINLWMT 388 (807)
Q Consensus 319 -----~~--~~~~~w~~~~~~~~~~~~~~~~~i~~~l~lsy~~L~~~~~~k~cfl~~s~fp---~~~~i~~~~li~~W~a 388 (807)
.. -+.+....+..... ...+.-.+..|+. +.+.++..++.+. .+..+....+...+..
T Consensus 253 ~a~~~~~~~i~~~~v~~~~~~~~----------~~~~~~~l~~l~~--~~~~~L~~l~~~~~~~~~~~~~~~~i~~~~~~ 320 (389)
T 1fnn_A 253 AAQQNGRKHIAPEDVRKSSKEVL----------FGISEEVLIGLPL--HEKLFLLAIVRSLKISHTPYITFGDAEESYKI 320 (389)
T ss_dssp HHHHTTCSSCCHHHHHHHHHHHS----------CCCCHHHHHHSCH--HHHHHHHHHHHHHHHHCSSCEEHHHHHHHHHH
T ss_pred HHHHhCCCCcCHHHHHHHHHHHh----------hhhHHHHHHcCCH--HHHHHHHHHHHHHhhccCCCccHHHHHHHHHH
Confidence 11 13333333333211 1112233556777 6777776666553 2214555555554432
Q ss_pred ----cCCCCCCCCchHHHHHHHHHHHHhhcCCcceecc----CCCCCccEEEE----ChhHHHHHHHhhcc
Q 047321 389 ----QGYLNADEDEEMEMIGEEYFNILATRSFFQEFQK----NDDDDFTSCKM----HDIVNDFAQFVSRK 447 (807)
Q Consensus 389 ----eg~i~~~~~~~~e~~~~~~~~~L~~rsll~~~~~----~~~~~~~~~~m----Hdlv~~~a~~~~~~ 447 (807)
.|. .+. ......+++++|...++|..... +..|+...+++ |+++..+...+..+
T Consensus 321 ~~~~~~~-~~~----~~~~~~~~l~~L~~~gli~~~~~~~~~g~~g~~~~~~l~~~~~~v~~~~~~~~~~~ 386 (389)
T 1fnn_A 321 VCEEYGE-RPR----VHSQLWSYLNDLREKGIVETRQNKRGEGVRGRTTLISIGTEPLDTLEAVITKLIKE 386 (389)
T ss_dssp HHHHTTC-CCC----CHHHHHHHHHHHHHTTSSEEEEC---------CEEEECCSSCHHHHHHHHHHHHHH
T ss_pred HHHHcCC-CCC----CHHHHHHHHHHHHhCCCeEEeeeccCCCCCCceeEEEeCCCHHHHHHHHHHHHHHH
Confidence 221 110 12345678999999999987654 22333333333 45666666555443
No 72
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.47 E-value=1e-13 Score=156.06 Aligned_cols=216 Identities=13% Similarity=0.107 Sum_probs=159.4
Q ss_pred CCCceeEEEeCCCCCCCCCCCCccc-cccccCcccceeeeccccCCccCeeEecCccCCCccccccccccccccCccccc
Q 047321 488 GLNRLRTLLIYDQSPYNPSLSSSIL-PELFNKLACLRALVIRQSLRTLEKFVVGGGVDGSNTCRLESLKNLQLLRECGIE 566 (807)
Q Consensus 488 ~l~~Lr~L~l~~~~~~~l~~~i~~L-P~~i~~L~~L~~LdL~~~L~~L~~l~~~~~~~~~~~~~i~~L~~L~~L~~L~i~ 566 (807)
.+++|++|++++| .+..+ |..++++++|++|+|+.+- +. .+..+..+.+|+.|.++
T Consensus 32 ~~~~L~~L~Ls~n-------~l~~~~~~~~~~l~~L~~L~Ls~N~--l~--------------~~~~l~~l~~L~~L~Ls 88 (487)
T 3oja_A 32 SAWNVKELDLSGN-------PLSQISAADLAPFTKLELLNLSSNV--LY--------------ETLDLESLSTLRTLDLN 88 (487)
T ss_dssp TGGGCCEEECCSS-------CCCCCCGGGGTTCTTCCEEECTTSC--CE--------------EEEECTTCTTCCEEECC
T ss_pred cCCCccEEEeeCC-------cCCCCCHHHHhCCCCCCEEEeeCCC--CC--------------CCcccccCCCCCEEEec
Confidence 3459999999998 67766 5789999999999998331 11 11125666777777776
Q ss_pred CCCCCCChhHHHHhhccCCCCCCeEEEEeeccCCCcchhhhhchhhHHHHHHhhcCCCCCCCCCCCcc-cceEeccCCcC
Q 047321 567 GLGNVSHLDEAERLQLYNQQNLLRLRLRFGRVVDGEDEERRRKNEKDKQLLEALQPPLSHLPPLGKLP-LKKLELRDLES 645 (807)
Q Consensus 567 ~l~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~l~p~~~~lp~l~~L~-L~~L~L~~~~~ 645 (807)
+. .+. .+...++|+.|++++|.+. .+|. ..++ |+.|+|+++.
T Consensus 89 ~N-~l~--------~l~~~~~L~~L~L~~N~l~--------------------------~~~~-~~l~~L~~L~L~~N~- 131 (487)
T 3oja_A 89 NN-YVQ--------ELLVGPSIETLHAANNNIS--------------------------RVSC-SRGQGKKNIYLANNK- 131 (487)
T ss_dssp SS-EEE--------EEEECTTCCEEECCSSCCC--------------------------CEEE-CCCSSCEEEECCSSC-
T ss_pred CC-cCC--------CCCCCCCcCEEECcCCcCC--------------------------CCCc-cccCCCCEEECCCCC-
Confidence 52 111 1334479999999988752 2222 3467 9999998754
Q ss_pred ceeeCcccCCCCCCCCCCCCCCCCCCccccCcccccccccCCCccccchhhhccccCC-CCCCcccEEEEccCCCCCCCc
Q 047321 646 VKRVGNEFLGIEESSEDDPSSSSSSPSVIAFPKLKSLEIDGMKELEEWNYRITRKENI-SIMPRLSSLQIMNCRKLKALP 724 (807)
Q Consensus 646 l~~i~~~~~~~~~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~-~~l~~L~~L~l~~c~~L~~lp 724 (807)
++.++.. .+..+++|+.|+++++ .+...+. ..+ ..+++|+.|++++| .+..+|
T Consensus 132 l~~~~~~-------------------~~~~l~~L~~L~Ls~N-~l~~~~~-----~~l~~~l~~L~~L~Ls~N-~l~~~~ 185 (487)
T 3oja_A 132 ITMLRDL-------------------DEGCRSRVQYLDLKLN-EIDTVNF-----AELAASSDTLEHLNLQYN-FIYDVK 185 (487)
T ss_dssp CCSGGGB-------------------CGGGGSSEEEEECTTS-CCCEEEG-----GGGGGGTTTCCEEECTTS-CCCEEE
T ss_pred CCCCCch-------------------hhcCCCCCCEEECCCC-CCCCcCh-----HHHhhhCCcccEEecCCC-cccccc
Confidence 4433221 1457899999999985 5555433 223 36899999999999 688887
Q ss_pred ccccCCCCccEEeeccCcccccccccccccCCCCCCCCeeeeccCCCcccCCccCCCCCcccccccccchhh
Q 047321 725 DYLLQTIALQKLSIYSCDLLEELPILEDRRTTDIPRLSSLAIWYCPKLKVLPDYLLRTTTLQAGEQDYENEK 796 (807)
Q Consensus 725 ~~l~~l~~L~~L~l~~c~~l~~lP~~~~~~~~~l~~L~~L~i~~c~~l~~lP~~l~~l~~L~~L~l~~~~~~ 796 (807)
. ...+++|+.|++++| .+..+| ..+..+++|+.|++++| .+..+|..+..+++|+.|++++|++.
T Consensus 186 ~-~~~l~~L~~L~Ls~N-~l~~~~----~~~~~l~~L~~L~Ls~N-~l~~lp~~l~~l~~L~~L~l~~N~l~ 250 (487)
T 3oja_A 186 G-QVVFAKLKTLDLSSN-KLAFMG----PEFQSAAGVTWISLRNN-KLVLIEKALRFSQNLEHFDLRGNGFH 250 (487)
T ss_dssp C-CCCCTTCCEEECCSS-CCCEEC----GGGGGGTTCSEEECTTS-CCCEECTTCCCCTTCCEEECTTCCBC
T ss_pred c-cccCCCCCEEECCCC-CCCCCC----HhHcCCCCccEEEecCC-cCcccchhhccCCCCCEEEcCCCCCc
Confidence 4 446999999999996 577887 56788999999999984 57789999999999999999999987
No 73
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.47 E-value=1.9e-13 Score=144.34 Aligned_cols=194 Identities=15% Similarity=0.216 Sum_probs=136.8
Q ss_pred CcceEEEEEeeccCCCCccccCCCCceeEEEeCCCCCCCCCCCCccccccccCcccceeeeccccCCccCeeEecCccCC
Q 047321 466 GDKVRHLGLKFEEGASFPMSIHGLNRLRTLLIYDQSPYNPSLSSSILPELFNKLACLRALVIRQSLRTLEKFVVGGGVDG 545 (807)
Q Consensus 466 ~~~~r~L~l~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~l~~~i~~LP~~i~~L~~L~~LdL~~~L~~L~~l~~~~~~~~ 545 (807)
..++++|++.++.+..++ .+..+++|++|++++| .+..+|. ++++++|++|+++.+
T Consensus 40 l~~L~~L~l~~~~i~~l~-~~~~l~~L~~L~L~~n-------~i~~~~~-~~~l~~L~~L~L~~n--------------- 95 (308)
T 1h6u_A 40 LDGITTLSAFGTGVTTIE-GVQYLNNLIGLELKDN-------QITDLAP-LKNLTKITELELSGN--------------- 95 (308)
T ss_dssp HHTCCEEECTTSCCCCCT-TGGGCTTCCEEECCSS-------CCCCCGG-GTTCCSCCEEECCSC---------------
T ss_pred cCCcCEEEeeCCCccCch-hhhccCCCCEEEccCC-------cCCCChh-HccCCCCCEEEccCC---------------
Confidence 346777777777666554 4666777777777776 6666666 777777777766511
Q ss_pred CccccccccccccccCcccccCCCCCCChhHHHHhhccCCCCCCeEEEEeeccCCCcchhhhhchhhHHHHHHhhcCCCC
Q 047321 546 SNTCRLESLKNLQLLRECGIEGLGNVSHLDEAERLQLYNQQNLLRLRLRFGRVVDGEDEERRRKNEKDKQLLEALQPPLS 625 (807)
Q Consensus 546 ~~~~~i~~L~~L~~L~~L~i~~l~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~l~p~~~ 625 (807)
.+..+ ..+.++++|+.|++++|.+ .
T Consensus 96 ----~l~~~-------------------------~~~~~l~~L~~L~l~~n~l--------------------------~ 120 (308)
T 1h6u_A 96 ----PLKNV-------------------------SAIAGLQSIKTLDLTSTQI--------------------------T 120 (308)
T ss_dssp ----CCSCC-------------------------GGGTTCTTCCEEECTTSCC--------------------------C
T ss_pred ----cCCCc-------------------------hhhcCCCCCCEEECCCCCC--------------------------C
Confidence 11110 0255677888888888874 3
Q ss_pred CCCCCCCcc-cceEeccCCcCceeeCcccCCCCCCCCCCCCCCCCCCccccCcccccccccCCCccccchhhhccccCCC
Q 047321 626 HLPPLGKLP-LKKLELRDLESVKRVGNEFLGIEESSEDDPSSSSSSPSVIAFPKLKSLEIDGMKELEEWNYRITRKENIS 704 (807)
Q Consensus 626 ~lp~l~~L~-L~~L~L~~~~~l~~i~~~~~~~~~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~ 704 (807)
.+|.++.++ |++|+++++. ++.++. +..+++|+.|+++++ .+..++. +.
T Consensus 121 ~~~~l~~l~~L~~L~l~~n~-l~~~~~---------------------l~~l~~L~~L~l~~n-~l~~~~~-------l~ 170 (308)
T 1h6u_A 121 DVTPLAGLSNLQVLYLDLNQ-ITNISP---------------------LAGLTNLQYLSIGNA-QVSDLTP-------LA 170 (308)
T ss_dssp CCGGGTTCTTCCEEECCSSC-CCCCGG---------------------GGGCTTCCEEECCSS-CCCCCGG-------GT
T ss_pred CchhhcCCCCCCEEECCCCc-cCcCcc---------------------ccCCCCccEEEccCC-cCCCChh-------hc
Confidence 456678888 9999998754 443332 347889999999886 5665542 55
Q ss_pred CCCcccEEEEccCCCCCCCcccccCCCCccEEeeccCcccccccccccccCCCCCCCCeeeeccCCCcccCCc
Q 047321 705 IMPRLSSLQIMNCRKLKALPDYLLQTIALQKLSIYSCDLLEELPILEDRRTTDIPRLSSLAIWYCPKLKVLPD 777 (807)
Q Consensus 705 ~l~~L~~L~l~~c~~L~~lp~~l~~l~~L~~L~l~~c~~l~~lP~~~~~~~~~l~~L~~L~i~~c~~l~~lP~ 777 (807)
.+++|+.|++++| .+..+|. +..+++|+.|++++| .+..+| .+..+++|+.|++++|+ +...|.
T Consensus 171 ~l~~L~~L~l~~n-~l~~~~~-l~~l~~L~~L~L~~N-~l~~~~-----~l~~l~~L~~L~l~~N~-i~~~~~ 234 (308)
T 1h6u_A 171 NLSKLTTLKADDN-KISDISP-LASLPNLIEVHLKNN-QISDVS-----PLANTSNLFIVTLTNQT-ITNQPV 234 (308)
T ss_dssp TCTTCCEEECCSS-CCCCCGG-GGGCTTCCEEECTTS-CCCBCG-----GGTTCTTCCEEEEEEEE-EECCCE
T ss_pred CCCCCCEEECCCC-ccCcChh-hcCCCCCCEEEccCC-ccCccc-----cccCCCCCCEEEccCCe-eecCCe
Confidence 7899999999988 7888875 788999999999986 567775 36788999999998855 566654
No 74
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.47 E-value=8.8e-14 Score=147.64 Aligned_cols=221 Identities=13% Similarity=0.079 Sum_probs=162.7
Q ss_pred cccCCCCceeEEEeCCCCCCCCCCCCcccc-ccccCcccceeeeccccCCccCeeEecCccCCCccccccccccccccCc
Q 047321 484 MSIHGLNRLRTLLIYDQSPYNPSLSSSILP-ELFNKLACLRALVIRQSLRTLEKFVVGGGVDGSNTCRLESLKNLQLLRE 562 (807)
Q Consensus 484 ~~~~~l~~Lr~L~l~~~~~~~l~~~i~~LP-~~i~~L~~L~~LdL~~~L~~L~~l~~~~~~~~~~~~~i~~L~~L~~L~~ 562 (807)
..+..+++|++|++++| .+..+| ..++++++|++|+|+.+ .+. .+..+..+.+|+.
T Consensus 28 ~~~~~~~~L~~L~L~~n-------~l~~~~~~~~~~l~~L~~L~Ls~n--~l~--------------~~~~~~~l~~L~~ 84 (317)
T 3o53_A 28 SLRQSAWNVKELDLSGN-------PLSQISAADLAPFTKLELLNLSSN--VLY--------------ETLDLESLSTLRT 84 (317)
T ss_dssp HHHTTGGGCSEEECTTS-------CCCCCCHHHHTTCTTCCEEECTTS--CCE--------------EEEEETTCTTCCE
T ss_pred HHhccCCCCCEEECcCC-------ccCcCCHHHhhCCCcCCEEECCCC--cCC--------------cchhhhhcCCCCE
Confidence 33456789999999998 777775 78999999999999833 011 1112566677777
Q ss_pred ccccCCCCCCChhHHHHhhccCCCCCCeEEEEeeccCCCcchhhhhchhhHHHHHHhhcCCCCCCCCCCCcc-cceEecc
Q 047321 563 CGIEGLGNVSHLDEAERLQLYNQQNLLRLRLRFGRVVDGEDEERRRKNEKDKQLLEALQPPLSHLPPLGKLP-LKKLELR 641 (807)
Q Consensus 563 L~i~~l~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~l~p~~~~lp~l~~L~-L~~L~L~ 641 (807)
|.+++.. +. .+...++|+.|+++.|.+. .++ ...++ |++|+++
T Consensus 85 L~Ls~n~-l~--------~l~~~~~L~~L~l~~n~l~--------------------------~~~-~~~~~~L~~L~l~ 128 (317)
T 3o53_A 85 LDLNNNY-VQ--------ELLVGPSIETLHAANNNIS--------------------------RVS-CSRGQGKKNIYLA 128 (317)
T ss_dssp EECCSSE-EE--------EEEECTTCCEEECCSSCCS--------------------------EEE-ECCCSSCEEEECC
T ss_pred EECcCCc-cc--------cccCCCCcCEEECCCCccC--------------------------CcC-ccccCCCCEEECC
Confidence 7776521 11 2334589999999988742 122 12367 9999998
Q ss_pred CCcCceeeCcccCCCCCCCCCCCCCCCCCCccccCcccccccccCCCccccchhhhccccCCCCCCcccEEEEccCCCCC
Q 047321 642 DLESVKRVGNEFLGIEESSEDDPSSSSSSPSVIAFPKLKSLEIDGMKELEEWNYRITRKENISIMPRLSSLQIMNCRKLK 721 (807)
Q Consensus 642 ~~~~l~~i~~~~~~~~~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~L~ 721 (807)
++. ++.++... +..+++|+.|+++++ .+...+. ......+++|+.|++++| .++
T Consensus 129 ~N~-l~~~~~~~-------------------~~~l~~L~~L~Ls~N-~l~~~~~----~~~~~~l~~L~~L~L~~N-~l~ 182 (317)
T 3o53_A 129 NNK-ITMLRDLD-------------------EGCRSRVQYLDLKLN-EIDTVNF----AELAASSDTLEHLNLQYN-FIY 182 (317)
T ss_dssp SSC-CCSGGGBC-------------------TGGGSSEEEEECTTS-CCCEEEG----GGGGGGTTTCCEEECTTS-CCC
T ss_pred CCC-CCCccchh-------------------hhccCCCCEEECCCC-CCCcccH----HHHhhccCcCCEEECCCC-cCc
Confidence 754 44443221 347899999999985 5655543 112236899999999999 788
Q ss_pred CCcccccCCCCccEEeeccCcccccccccccccCCCCCCCCeeeeccCCCcccCCccCCCCCcccccccccchhh
Q 047321 722 ALPDYLLQTIALQKLSIYSCDLLEELPILEDRRTTDIPRLSSLAIWYCPKLKVLPDYLLRTTTLQAGEQDYENEK 796 (807)
Q Consensus 722 ~lp~~l~~l~~L~~L~l~~c~~l~~lP~~~~~~~~~l~~L~~L~i~~c~~l~~lP~~l~~l~~L~~L~l~~~~~~ 796 (807)
.+|.. ..+++|++|++++| .+..+| ..+..+++|+.|++++| .++.+|..+..+++|+.|++++|++.
T Consensus 183 ~~~~~-~~l~~L~~L~Ls~N-~l~~l~----~~~~~l~~L~~L~L~~N-~l~~l~~~~~~l~~L~~L~l~~N~~~ 250 (317)
T 3o53_A 183 DVKGQ-VVFAKLKTLDLSSN-KLAFMG----PEFQSAAGVTWISLRNN-KLVLIEKALRFSQNLEHFDLRGNGFH 250 (317)
T ss_dssp EEECC-CCCTTCCEEECCSS-CCCEEC----GGGGGGTTCSEEECTTS-CCCEECTTCCCCTTCCEEECTTCCCB
T ss_pred ccccc-cccccCCEEECCCC-cCCcch----hhhcccCcccEEECcCC-cccchhhHhhcCCCCCEEEccCCCcc
Confidence 88744 46999999999996 677887 56788999999999985 67899999999999999999999987
No 75
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.46 E-value=1.1e-14 Score=154.27 Aligned_cols=247 Identities=14% Similarity=0.104 Sum_probs=154.5
Q ss_pred eEEEEEeeccCCCCccccCCCCceeEEEeCCCCCCCCCCCCc--ccccccc-------CcccceeeeccccCCccCeeEe
Q 047321 469 VRHLGLKFEEGASFPMSIHGLNRLRTLLIYDQSPYNPSLSSS--ILPELFN-------KLACLRALVIRQSLRTLEKFVV 539 (807)
Q Consensus 469 ~r~L~l~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~l~~~i~--~LP~~i~-------~L~~L~~LdL~~~L~~L~~l~~ 539 (807)
++.+.+.+|.+ .+|..+... |++|+++++ .+. .+|..+. ++++|++|+|+
T Consensus 45 L~~l~l~~n~l-~~p~~~~~~--L~~L~L~~n-------~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~----------- 103 (312)
T 1wwl_A 45 LEYLLKRVDTE-ADLGQFTDI--IKSLSLKRL-------TVRAARIPSRILFGALRVLGISGLQELTLE----------- 103 (312)
T ss_dssp CTTHHHHCCTT-CCCHHHHHH--HHHCCCCEE-------EEEEEECBHHHHHHHHHHHTTSCCCEEEEE-----------
T ss_pred ceeEeeccccc-ccHHHHHHH--Hhhcccccc-------cccCCCcCHHHHHHHHHhcCcCCccEEEcc-----------
Confidence 44444444544 345544433 666666664 332 3455554 56666666665
Q ss_pred cCccCCCcccccccc--ccccccCcccccCCCCCCChhHHHH-hhccCCCCCCeEEEEeeccCCCcchhhhhchhhHHHH
Q 047321 540 GGGVDGSNTCRLESL--KNLQLLRECGIEGLGNVSHLDEAER-LQLYNQQNLLRLRLRFGRVVDGEDEERRRKNEKDKQL 616 (807)
Q Consensus 540 ~~~~~~~~~~~i~~L--~~L~~L~~L~i~~l~~~~~~~~~~~-~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~ 616 (807)
.+.+. +..+..+ ..+.+|+.|.+++-. +...+.... .....+++|++|++++|.+
T Consensus 104 -~n~l~--~~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~l~~~~~~~L~~L~L~~N~l------------------ 161 (312)
T 1wwl_A 104 -NLEVT--GTAPPPLLEATGPDLNILNLRNVS-WATRDAWLAELQQWLKPGLKVLSIAQAHS------------------ 161 (312)
T ss_dssp -EEBCB--SCCCCCSSSCCSCCCSEEEEESCB-CSSSSSHHHHHHTTCCTTCCEEEEESCSC------------------
T ss_pred -CCccc--chhHHHHHHhcCCCccEEEccCCC-CcchhHHHHHHHHhhcCCCcEEEeeCCCC------------------
Confidence 22210 1112222 566677776665421 111111111 0111238999999999885
Q ss_pred HHhhcCCCCCCC--CCCCcc-cceEeccCCcCceee--CcccCCCCCCCCCCCCCCCCCCccccCcccccccccCCCccc
Q 047321 617 LEALQPPLSHLP--PLGKLP-LKKLELRDLESVKRV--GNEFLGIEESSEDDPSSSSSSPSVIAFPKLKSLEIDGMKELE 691 (807)
Q Consensus 617 l~~l~p~~~~lp--~l~~L~-L~~L~L~~~~~l~~i--~~~~~~~~~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~ 691 (807)
..++ .++.++ |++|+++++...+.+ +..+. ...+++|+.|+++++ .+.
T Consensus 162 --------~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~------------------~~~l~~L~~L~L~~N-~l~ 214 (312)
T 1wwl_A 162 --------LNFSCEQVRVFPALSTLDLSDNPELGERGLISALC------------------PLKFPTLQVLALRNA-GME 214 (312)
T ss_dssp --------CCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSC------------------TTSCTTCCEEECTTS-CCC
T ss_pred --------ccchHHHhccCCCCCEEECCCCCcCcchHHHHHHH------------------hccCCCCCEEECCCC-cCc
Confidence 2333 378899 999999986643322 11110 147899999999986 565
Q ss_pred cchhhhccccCCCCCCcccEEEEccCCCCCCCc--ccccCCCCccEEeeccCcccccccccccccCCCCCCCCeeeeccC
Q 047321 692 EWNYRITRKENISIMPRLSSLQIMNCRKLKALP--DYLLQTIALQKLSIYSCDLLEELPILEDRRTTDIPRLSSLAIWYC 769 (807)
Q Consensus 692 ~~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~lp--~~l~~l~~L~~L~l~~c~~l~~lP~~~~~~~~~l~~L~~L~i~~c 769 (807)
.++... ...+..+++|+.|++++| .+...+ ..+..+++|++|++++| .+..+| ..+. ++|+.|++++|
T Consensus 215 ~~~~~~--~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~~l~~L~~L~Ls~N-~l~~ip----~~~~--~~L~~L~Ls~N 284 (312)
T 1wwl_A 215 TPSGVC--SALAAARVQLQGLDLSHN-SLRDAAGAPSCDWPSQLNSLNLSFT-GLKQVP----KGLP--AKLSVLDLSYN 284 (312)
T ss_dssp CHHHHH--HHHHHTTCCCSEEECTTS-CCCSSCCCSCCCCCTTCCEEECTTS-CCSSCC----SSCC--SEEEEEECCSS
T ss_pred chHHHH--HHHHhcCCCCCEEECCCC-cCCcccchhhhhhcCCCCEEECCCC-ccChhh----hhcc--CCceEEECCCC
Confidence 433200 011236799999999999 566644 34566899999999996 577898 4444 89999999984
Q ss_pred CCcccCCccCCCCCcccccccccchhhh
Q 047321 770 PKLKVLPDYLLRTTTLQAGEQDYENEKF 797 (807)
Q Consensus 770 ~~l~~lP~~l~~l~~L~~L~l~~~~~~~ 797 (807)
.++.+|. +..+++|+.|++++|++..
T Consensus 285 -~l~~~p~-~~~l~~L~~L~L~~N~l~~ 310 (312)
T 1wwl_A 285 -RLDRNPS-PDELPQVGNLSLKGNPFLD 310 (312)
T ss_dssp -CCCSCCC-TTTSCEEEEEECTTCTTTC
T ss_pred -CCCCChh-HhhCCCCCEEeccCCCCCC
Confidence 6888887 8999999999999999864
No 76
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.46 E-value=8.1e-13 Score=134.01 Aligned_cols=130 Identities=13% Similarity=0.057 Sum_probs=77.0
Q ss_pred ccCCCCCCeEEEEeeccCCCcchhhhhchhhHHHHHHhhcCCCCCCCCCCCcc-cc---eEeccCCcCceeeCcccCCCC
Q 047321 582 LYNQQNLLRLRLRFGRVVDGEDEERRRKNEKDKQLLEALQPPLSHLPPLGKLP-LK---KLELRDLESVKRVGNEFLGIE 657 (807)
Q Consensus 582 l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~l~p~~~~lp~l~~L~-L~---~L~L~~~~~l~~i~~~~~~~~ 657 (807)
+.++++|+.|+++.|.+ ..+|.++.++ |+ +|+++++..++.++...
T Consensus 101 f~~l~~L~~L~l~~n~l--------------------------~~lp~~~~l~~L~~L~~L~l~~N~~l~~i~~~~---- 150 (239)
T 2xwt_C 101 LKELPLLKFLGIFNTGL--------------------------KMFPDLTKVYSTDIFFILEITDNPYMTSIPVNA---- 150 (239)
T ss_dssp EECCTTCCEEEEEEECC--------------------------CSCCCCTTCCBCCSEEEEEEESCTTCCEECTTT----
T ss_pred hCCCCCCCEEeCCCCCC--------------------------ccccccccccccccccEEECCCCcchhhcCccc----
Confidence 55667788888877764 3455555555 55 77777654566655431
Q ss_pred CCCCCCCCCCCCCCccccCcccc-cccccCCCccccchhhhccccCCCCCCcccEEEEccCCCCCCCcc-cccCC-CCcc
Q 047321 658 ESSEDDPSSSSSSPSVIAFPKLK-SLEIDGMKELEEWNYRITRKENISIMPRLSSLQIMNCRKLKALPD-YLLQT-IALQ 734 (807)
Q Consensus 658 ~l~~~~~~~~~~~~~~~~l~~L~-~L~l~~~~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~lp~-~l~~l-~~L~ 734 (807)
+..+++|+ .|+++++ .+..++. .....++|+.|++++|+.++.+|. .+..+ ++|+
T Consensus 151 ---------------~~~l~~L~~~L~l~~n-~l~~i~~------~~~~~~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~ 208 (239)
T 2xwt_C 151 ---------------FQGLCNETLTLKLYNN-GFTSVQG------YAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPS 208 (239)
T ss_dssp ---------------TTTTBSSEEEEECCSC-CCCEECT------TTTTTCEEEEEECTTCTTCCEECTTTTTTCSBCCS
T ss_pred ---------------ccchhcceeEEEcCCC-CCcccCH------hhcCCCCCCEEEcCCCCCcccCCHHHhhccccCCc
Confidence 23566777 7777663 4555443 222236677777777755666643 35556 6777
Q ss_pred EEeeccCcccccccccccccCCCCCCCCeeeeccCC
Q 047321 735 KLSIYSCDLLEELPILEDRRTTDIPRLSSLAIWYCP 770 (807)
Q Consensus 735 ~L~l~~c~~l~~lP~~~~~~~~~l~~L~~L~i~~c~ 770 (807)
.|+++++ .+..+| . ..+++|+.|.+.++.
T Consensus 209 ~L~l~~N-~l~~l~----~--~~~~~L~~L~l~~~~ 237 (239)
T 2xwt_C 209 LLDVSQT-SVTALP----S--KGLEHLKELIARNTW 237 (239)
T ss_dssp EEECTTC-CCCCCC----C--TTCTTCSEEECTTC-
T ss_pred EEECCCC-ccccCC----h--hHhccCceeeccCcc
Confidence 7777663 456665 2 256666666666554
No 77
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.44 E-value=1e-12 Score=135.86 Aligned_cols=195 Identities=21% Similarity=0.283 Sum_probs=117.9
Q ss_pred ceEEEEEeeccCCCCccccCCCCceeEEEeCCCCCCCCCCCCccccc-cccCcccceeeeccccCCccCeeEecCccCCC
Q 047321 468 KVRHLGLKFEEGASFPMSIHGLNRLRTLLIYDQSPYNPSLSSSILPE-LFNKLACLRALVIRQSLRTLEKFVVGGGVDGS 546 (807)
Q Consensus 468 ~~r~L~l~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~l~~~i~~LP~-~i~~L~~L~~LdL~~~L~~L~~l~~~~~~~~~ 546 (807)
..+.++++++.+..+|..+. ++|++|+++++ .+..+|. .++++++|++|+|+.+
T Consensus 17 ~~~~l~~~~~~l~~ip~~~~--~~l~~L~l~~n-------~l~~~~~~~~~~l~~L~~L~l~~n---------------- 71 (270)
T 2o6q_A 17 NKNSVDCSSKKLTAIPSNIP--ADTKKLDLQSN-------KLSSLPSKAFHRLTKLRLLYLNDN---------------- 71 (270)
T ss_dssp TTTEEECTTSCCSSCCSCCC--TTCSEEECCSS-------CCSCCCTTSSSSCTTCCEEECCSS----------------
T ss_pred CCCEEEccCCCCCccCCCCC--CCCCEEECcCC-------CCCeeCHHHhcCCCCCCEEECCCC----------------
Confidence 35567777777776676554 57778888777 6666654 6777777777777511
Q ss_pred ccccccccccccccCcccccCCCCCCChhHHHHhhccCCCCCCeEEEEeeccCCCcchhhhhchhhHHHHHHhhcCCCCC
Q 047321 547 NTCRLESLKNLQLLRECGIEGLGNVSHLDEAERLQLYNQQNLLRLRLRFGRVVDGEDEERRRKNEKDKQLLEALQPPLSH 626 (807)
Q Consensus 547 ~~~~i~~L~~L~~L~~L~i~~l~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~l~p~~~~ 626 (807)
.+..+ .. ..+.++++|++|++++|.+ ..
T Consensus 72 ---~l~~i-----------------~~------~~~~~l~~L~~L~l~~n~l--------------------------~~ 99 (270)
T 2o6q_A 72 ---KLQTL-----------------PA------GIFKELKNLETLWVTDNKL--------------------------QA 99 (270)
T ss_dssp ---CCSCC-----------------CT------TTTSSCTTCCEEECCSSCC--------------------------CC
T ss_pred ---ccCee-----------------Ch------hhhcCCCCCCEEECCCCcC--------------------------Cc
Confidence 11100 00 0234566777777777764 23
Q ss_pred CCC--CCCcc-cceEeccCCcCceeeCcccCCCCCCCCCCCCCCCCCCccccCcccccccccCCCccccchhhhccccCC
Q 047321 627 LPP--LGKLP-LKKLELRDLESVKRVGNEFLGIEESSEDDPSSSSSSPSVIAFPKLKSLEIDGMKELEEWNYRITRKENI 703 (807)
Q Consensus 627 lp~--l~~L~-L~~L~L~~~~~l~~i~~~~~~~~~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~ 703 (807)
+|. ++.++ |++|+++++. ++.++... +..+++|+.|+++++ .+..++. ..+
T Consensus 100 ~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~-------------------~~~l~~L~~L~Ls~n-~l~~~~~-----~~~ 153 (270)
T 2o6q_A 100 LPIGVFDQLVNLAELRLDRNQ-LKSLPPRV-------------------FDSLTKLTYLSLGYN-ELQSLPK-----GVF 153 (270)
T ss_dssp CCTTTTTTCSSCCEEECCSSC-CCCCCTTT-------------------TTTCTTCCEEECCSS-CCCCCCT-----TTT
T ss_pred CCHhHcccccCCCEEECCCCc-cCeeCHHH-------------------hCcCcCCCEEECCCC-cCCccCH-----hHc
Confidence 332 56677 8888877643 44433221 236677777777764 4555543 234
Q ss_pred CCCCcccEEEEccCCCCCCCccc-ccCCCCccEEeeccCcccccccccccccCCCCCCCCeeeeccCC
Q 047321 704 SIMPRLSSLQIMNCRKLKALPDY-LLQTIALQKLSIYSCDLLEELPILEDRRTTDIPRLSSLAIWYCP 770 (807)
Q Consensus 704 ~~l~~L~~L~l~~c~~L~~lp~~-l~~l~~L~~L~l~~c~~l~~lP~~~~~~~~~l~~L~~L~i~~c~ 770 (807)
..+++|+.|++++| .+..+|.. +..+++|+.|++++| .+..+|. ..+..+++|+.|++++++
T Consensus 154 ~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~---~~~~~l~~L~~L~l~~N~ 216 (270)
T 2o6q_A 154 DKLTSLKELRLYNN-QLKRVPEGAFDKLTELKTLKLDNN-QLKRVPE---GAFDSLEKLKMLQLQENP 216 (270)
T ss_dssp TTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSS-CCSCCCT---TTTTTCTTCCEEECCSSC
T ss_pred cCCcccceeEecCC-cCcEeChhHhccCCCcCEEECCCC-cCCcCCH---HHhccccCCCEEEecCCC
Confidence 56777777777777 56666543 566777777777775 4556551 235566777777776654
No 78
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.43 E-value=1.3e-11 Score=134.67 Aligned_cols=294 Identities=12% Similarity=0.001 Sum_probs=178.5
Q ss_pred CccccccchHHHHHHHHhCCCCCCCCCceEEEEEccCCChHHHHHHHHHcCcccc----cc--cceEEEEEeCCCC-CHH
Q 047321 104 GGVCGRVDEKNELLSKLLCGSSEQQKGLDVISLVGLGGIGKTTLAQLAYNNDEVK----RN--FEKVIWVCVSNTF-EEI 176 (807)
Q Consensus 104 ~~~vGR~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~----~~--f~~~~wv~~~~~~-~~~ 176 (807)
..++||+++++++.+++..... ....+.+.|+|++|+||||+|+.+++...-. .. ....+|+++.... +..
T Consensus 20 ~~l~gr~~~~~~l~~~l~~~~~--~~~~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 97 (384)
T 2qby_B 20 KEIPFREDILRDAAIAIRYFVK--NEVKFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVNCREVGGTPQ 97 (384)
T ss_dssp SSCTTCHHHHHHHHHHHHHHHT--TCCCCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEEHHHHCSCHH
T ss_pred CCCCChHHHHHHHHHHHHHHHc--CCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEECccCCCCHH
Confidence 6799999999999988754211 2345689999999999999999998732111 01 2346788777666 788
Q ss_pred HHHHHHHHHcCCCCC--CCccHHHHHHHHHHHHhCCceEEEEeCCCCCCccChHHH-HHhhcCCCCCcEEEEEcCCHHH-
Q 047321 177 SVAKAIIEGLGVSAF--GLSEFESLMKQIQEYITGKKIFLVLDDVWDGDYKKWDPF-FSCLKNGHHESKILITTHDRSV- 252 (807)
Q Consensus 177 ~~~~~i~~~l~~~~~--~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~l-~~~l~~~~~gs~IliTTR~~~v- 252 (807)
.++..++..+..... ...........+.+.+..++.+||+||++.-....+... ...+.....+..||+||+....
T Consensus 98 ~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~~~~~iI~~t~~~~~~ 177 (384)
T 2qby_B 98 AVLSSLAGKLTGFSVPKHGINLGEYIDKIKNGTRNIRAIIYLDEVDTLVKRRGGDIVLYQLLRSDANISVIMISNDINVR 177 (384)
T ss_dssp HHHHHHHHHHHCSCCCSSSSCTHHHHHHHHHHHSSSCEEEEEETTHHHHHSTTSHHHHHHHHTSSSCEEEEEECSSTTTT
T ss_pred HHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHhccCCCEEEEECHHHhccCCCCceeHHHHhcCCcceEEEEEECCCchH
Confidence 888888887733221 122345566777778877766999999955322222222 3333332267788999886521
Q ss_pred -------HHHhCCCceEeCCCCChhhHHHHHHHHHhcc-CCccCccchHHHHHHHHHHcC---CCHH-HHHHHHHHh--h
Q 047321 253 -------ALQLGSIDIIPVKELGEGECWLLFKQIAFLR-RSFEDCEKLEPIGRKIASKCK---GLPL-AAKVIGNLL--R 318 (807)
Q Consensus 253 -------~~~~~~~~~~~l~~L~~~~~~~Lf~~~a~~~-~~~~~~~~~~~~~~~I~~~c~---glPL-ai~~~~~~l--~ 318 (807)
...++ ..+++++++.++..+++...+... ...... .+..+.|++.++ |.|. |+..+.... .
T Consensus 178 ~~l~~~l~sr~~--~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~---~~~~~~i~~~~~~~~G~~r~a~~~l~~a~~~a 252 (384)
T 2qby_B 178 DYMEPRVLSSLG--PSVIFKPYDAEQLKFILSKYAEYGLIKGTYD---DEILSYIAAISAKEHGDARKAVNLLFRAAQLA 252 (384)
T ss_dssp TTSCHHHHHTCC--CEEEECCCCHHHHHHHHHHHHHHTSCTTSCC---SHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHT
T ss_pred hhhCHHHHhcCC--CeEEECCCCHHHHHHHHHHHHHhhcccCCcC---HHHHHHHHHHHHhccCCHHHHHHHHHHHHHHh
Confidence 12212 389999999999999999886321 111111 245677888887 9887 444433332 1
Q ss_pred ---cCCCHHHHHHHHhccccccccCCCCchhhHHhcccCCCCccchhhhhhhhccCCCcceechhHHHHHHHhcCCCCCC
Q 047321 319 ---SKNTAKEWHIILDSEMWKVQEIGQGILAPLLLSYNDLPSNSMVKRCFSYCAVFPKDYNMNKRELINLWMTQGYLNAD 395 (807)
Q Consensus 319 ---~~~~~~~w~~~~~~~~~~~~~~~~~i~~~l~lsy~~L~~~~~~k~cfl~~s~fp~~~~i~~~~li~~W~aeg~i~~~ 395 (807)
..-+.+.+..+++... ...+.-++..|+. +.|..+..++....+-.+. +.....--..| +.+
T Consensus 253 ~~~~~i~~~~v~~~~~~~~----------~~~~~~~~~~l~~--~~~~~l~al~~~~~~~~~~-~~~~~~~~~~g-~~~- 317 (384)
T 2qby_B 253 SGGGIIRKEHVDKAIVDYE----------QERLIEAVKALPF--HYKLALRSLIESEDVMSAH-KMYTDLCNKFK-QKP- 317 (384)
T ss_dssp TSSSCCCHHHHHHHHHHHH----------HHHHHHHHHSSCH--HHHHHHHHHHTCCBHHHHH-HHHHHHHHHTT-CCC-
T ss_pred cCCCccCHHHHHHHHHHHh----------cchHHHHHHcCCH--HHHHHHHHHHHhcccChHH-HHHHHHHHHcC-CCC-
Confidence 1225677776665431 1345566778887 6676666666511101111 11111111222 111
Q ss_pred CCchHHHHHHHHHHHHhhcCCcceecc
Q 047321 396 EDEEMEMIGEEYFNILATRSFFQEFQK 422 (807)
Q Consensus 396 ~~~~~e~~~~~~~~~L~~rsll~~~~~ 422 (807)
.......++++.|..+|+++....
T Consensus 318 ---~~~~~~~~~l~~L~~~gli~~~~~ 341 (384)
T 2qby_B 318 ---LSYRRFSDIISELDMFGIVKIRII 341 (384)
T ss_dssp ---CCHHHHHHHHHHHHHTTSEEEEEE
T ss_pred ---CCHHHHHHHHHHHHhCCCEEEEec
Confidence 122456678999999999987543
No 79
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.42 E-value=7.4e-13 Score=139.75 Aligned_cols=53 Identities=13% Similarity=0.205 Sum_probs=25.8
Q ss_pred cceEEEEEeeccCCCCccccCCCCceeEEEeCCCCCCCCCCCCccccccccCcccceeeecc
Q 047321 467 DKVRHLGLKFEEGASFPMSIHGLNRLRTLLIYDQSPYNPSLSSSILPELFNKLACLRALVIR 528 (807)
Q Consensus 467 ~~~r~L~l~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~l~~~i~~LP~~i~~L~~L~~LdL~ 528 (807)
.++++|++++|.+..++. +..+++|++|++++| .+..+| .++++++|++|+++
T Consensus 63 ~~L~~L~L~~n~i~~~~~-~~~l~~L~~L~L~~n-------~l~~~~-~~~~l~~L~~L~l~ 115 (308)
T 1h6u_A 63 NNLIGLELKDNQITDLAP-LKNLTKITELELSGN-------PLKNVS-AIAGLQSIKTLDLT 115 (308)
T ss_dssp TTCCEEECCSSCCCCCGG-GTTCCSCCEEECCSC-------CCSCCG-GGTTCTTCCEEECT
T ss_pred CCCCEEEccCCcCCCChh-HccCCCCCEEEccCC-------cCCCch-hhcCCCCCCEEECC
Confidence 445555555555444443 455555555555554 344443 34445555555443
No 80
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.42 E-value=1.1e-12 Score=133.13 Aligned_cols=209 Identities=16% Similarity=0.216 Sum_probs=151.7
Q ss_pred EeeccCCCCccccCCCCceeEEEeCCCCCCCCCCCCccccc-cccCcccceeeeccccCCccCeeEecCccCCCcccc-c
Q 047321 474 LKFEEGASFPMSIHGLNRLRTLLIYDQSPYNPSLSSSILPE-LFNKLACLRALVIRQSLRTLEKFVVGGGVDGSNTCR-L 551 (807)
Q Consensus 474 l~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~l~~~i~~LP~-~i~~L~~L~~LdL~~~L~~L~~l~~~~~~~~~~~~~-i 551 (807)
+.++.+..+|. +. .+|++|+++++ .+..+|. .++++++|++|+++.+ . +
T Consensus 18 v~c~~l~~ip~-~~--~~l~~L~l~~n-------~l~~i~~~~~~~l~~L~~L~l~~n-------------------~~l 68 (239)
T 2xwt_C 18 VTCKDIQRIPS-LP--PSTQTLKLIET-------HLRTIPSHAFSNLPNISRIYVSID-------------------VTL 68 (239)
T ss_dssp EEECSCSSCCC-CC--TTCCEEEEESC-------CCSEECTTTTTTCTTCCEEEEECC-------------------SSC
T ss_pred eEccCccccCC-CC--CcccEEEEeCC-------cceEECHHHccCCCCCcEEeCCCC-------------------CCc
Confidence 33444666776 43 48999999988 7888876 7888889999888622 1 1
Q ss_pred cccccccccCcccccCCCCCCChhHHHHhhccCCCCCCeEEEEe-eccCCCcchhhhhchhhHHHHHHhhcCCCCCCCC-
Q 047321 552 ESLKNLQLLRECGIEGLGNVSHLDEAERLQLYNQQNLLRLRLRF-GRVVDGEDEERRRKNEKDKQLLEALQPPLSHLPP- 629 (807)
Q Consensus 552 ~~L~~L~~L~~L~i~~l~~~~~~~~~~~~~l~~l~~L~~L~L~~-~~~~~~~~~~~~~~~~~~~~~l~~l~p~~~~lp~- 629 (807)
..+. . ..+.++++|+.|++++ |.+ ..+|.
T Consensus 69 ~~i~----------------~-------~~f~~l~~L~~L~l~~~n~l--------------------------~~i~~~ 99 (239)
T 2xwt_C 69 QQLE----------------S-------HSFYNLSKVTHIEIRNTRNL--------------------------TYIDPD 99 (239)
T ss_dssp CEEC----------------T-------TTEESCTTCCEEEEEEETTC--------------------------CEECTT
T ss_pred ceeC----------------H-------hHcCCCcCCcEEECCCCCCe--------------------------eEcCHH
Confidence 1110 0 0356678899999997 664 23332
Q ss_pred -CCCcc-cceEeccCCcCceeeCcccCCCCCCCCCCCCCCCCCCccccCcccc---cccccCCCccccchhhhccccCCC
Q 047321 630 -LGKLP-LKKLELRDLESVKRVGNEFLGIEESSEDDPSSSSSSPSVIAFPKLK---SLEIDGMKELEEWNYRITRKENIS 704 (807)
Q Consensus 630 -l~~L~-L~~L~L~~~~~l~~i~~~~~~~~~l~~~~~~~~~~~~~~~~l~~L~---~L~l~~~~~l~~~~~~~~~~~~~~ 704 (807)
++.++ |++|+++++. ++.++. + ..+++|+ .|++++++.+..++. ..+.
T Consensus 100 ~f~~l~~L~~L~l~~n~-l~~lp~-~--------------------~~l~~L~~L~~L~l~~N~~l~~i~~-----~~~~ 152 (239)
T 2xwt_C 100 ALKELPLLKFLGIFNTG-LKMFPD-L--------------------TKVYSTDIFFILEITDNPYMTSIPV-----NAFQ 152 (239)
T ss_dssp SEECCTTCCEEEEEEEC-CCSCCC-C--------------------TTCCBCCSEEEEEEESCTTCCEECT-----TTTT
T ss_pred HhCCCCCCCEEeCCCCC-Cccccc-c--------------------ccccccccccEEECCCCcchhhcCc-----cccc
Confidence 56788 9999999854 555543 2 2455555 999999767877764 3466
Q ss_pred CCCccc-EEEEccCCCCCCCcccccCCCCccEEeeccCcccccccccccccCCCC-CCCCeeeeccCCCcccCCccCCCC
Q 047321 705 IMPRLS-SLQIMNCRKLKALPDYLLQTIALQKLSIYSCDLLEELPILEDRRTTDI-PRLSSLAIWYCPKLKVLPDYLLRT 782 (807)
Q Consensus 705 ~l~~L~-~L~l~~c~~L~~lp~~l~~l~~L~~L~l~~c~~l~~lP~~~~~~~~~l-~~L~~L~i~~c~~l~~lP~~l~~l 782 (807)
.+++|+ .|+++++ .++.+|......++|+.|++++|..+..+|. ..+..+ ++|+.|++++ +.++.+|.. .+
T Consensus 153 ~l~~L~~~L~l~~n-~l~~i~~~~~~~~~L~~L~L~~n~~l~~i~~---~~~~~l~~~L~~L~l~~-N~l~~l~~~--~~ 225 (239)
T 2xwt_C 153 GLCNETLTLKLYNN-GFTSVQGYAFNGTKLDAVYLNKNKYLTVIDK---DAFGGVYSGPSLLDVSQ-TSVTALPSK--GL 225 (239)
T ss_dssp TTBSSEEEEECCSC-CCCEECTTTTTTCEEEEEECTTCTTCCEECT---TTTTTCSBCCSEEECTT-CCCCCCCCT--TC
T ss_pred chhcceeEEEcCCC-CCcccCHhhcCCCCCCEEEcCCCCCcccCCH---HHhhccccCCcEEECCC-CccccCChh--Hh
Confidence 799999 9999988 7888887655558999999999866888861 456778 9999999998 567889865 67
Q ss_pred Ccccccccccch
Q 047321 783 TTLQAGEQDYEN 794 (807)
Q Consensus 783 ~~L~~L~l~~~~ 794 (807)
++|+.|+++++.
T Consensus 226 ~~L~~L~l~~~~ 237 (239)
T 2xwt_C 226 EHLKELIARNTW 237 (239)
T ss_dssp TTCSEEECTTC-
T ss_pred ccCceeeccCcc
Confidence 889999998764
No 81
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=99.42 E-value=1.3e-11 Score=134.83 Aligned_cols=294 Identities=15% Similarity=0.018 Sum_probs=179.1
Q ss_pred CCccccccchHHHHHHHHhCCCCCCCCCceEEEEEccCCChHHHHHHHHHcCcccccc------cceEEEEEeCCCCCHH
Q 047321 103 EGGVCGRVDEKNELLSKLLCGSSEQQKGLDVISLVGLGGIGKTTLAQLAYNNDEVKRN------FEKVIWVCVSNTFEEI 176 (807)
Q Consensus 103 ~~~~vGR~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~------f~~~~wv~~~~~~~~~ 176 (807)
+..++||+++++++..++..... ....+.+.|+|++|+||||+|+.+++. .... -...+|+++....+..
T Consensus 18 p~~~~gr~~~~~~l~~~l~~~~~--~~~~~~vll~G~~G~GKT~l~~~~~~~--~~~~~~~~~~~~~~~~i~~~~~~~~~ 93 (387)
T 2v1u_A 18 PDVLPHREAELRRLAEVLAPALR--GEKPSNALLYGLTGTGKTAVARLVLRR--LEARASSLGVLVKPIYVNARHRETPY 93 (387)
T ss_dssp CSCCTTCHHHHHHHHHTTGGGTS--SCCCCCEEECBCTTSSHHHHHHHHHHH--HHHHHHHHTCCEEEEEEETTTSCSHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHHc--CCCCCcEEEECCCCCCHHHHHHHHHHH--HHHHHhccCCCeEEEEEECCcCCCHH
Confidence 36799999999999998854321 235568999999999999999999873 2211 1245688888888888
Q ss_pred HHHHHHHHHcCCCCCC-CccHHHHHHHHHHHH--hCCceEEEEeCCCCCCcc--ChHHHHHhhcCC-----CCCcEEEEE
Q 047321 177 SVAKAIIEGLGVSAFG-LSEFESLMKQIQEYI--TGKKIFLVLDDVWDGDYK--KWDPFFSCLKNG-----HHESKILIT 246 (807)
Q Consensus 177 ~~~~~i~~~l~~~~~~-~~~~~~~~~~l~~~l--~~k~~LlVlDdv~~~~~~--~~~~l~~~l~~~-----~~gs~IliT 246 (807)
.++..++..++..... ......+...+.+.+ .+++.+||+||++.-... ..+.+...+... ..+..+|+|
T Consensus 94 ~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~~~~~~~~~~~~I~~ 173 (387)
T 2v1u_A 94 RVASAIAEAVGVRVPFTGLSVGEVYERLVKRLSRLRGIYIIVLDEIDFLPKRPGGQDLLYRITRINQELGDRVWVSLVGI 173 (387)
T ss_dssp HHHHHHHHHHSCCCCSSCCCHHHHHHHHHHHHTTSCSEEEEEEETTTHHHHSTTHHHHHHHHHHGGGCC-----CEEEEE
T ss_pred HHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEccHhhhcccCCCChHHHhHhhchhhcCCCceEEEEEE
Confidence 9999999988764322 233556666677676 356889999999653222 122233333211 345577888
Q ss_pred cCCHH--------HHHHhCCCceEeCCCCChhhHHHHHHHHHhcc-CCccCccchHHHHHHHHHHcC---CCHH-HHHHH
Q 047321 247 THDRS--------VALQLGSIDIIPVKELGEGECWLLFKQIAFLR-RSFEDCEKLEPIGRKIASKCK---GLPL-AAKVI 313 (807)
Q Consensus 247 TR~~~--------v~~~~~~~~~~~l~~L~~~~~~~Lf~~~a~~~-~~~~~~~~~~~~~~~I~~~c~---glPL-ai~~~ 313 (807)
|+... +...+. ...+.+++++.++..+++...+... ...... .+....|++.++ |.|. ++..+
T Consensus 174 t~~~~~~~~l~~~l~~r~~-~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~G~~r~~~~~l 249 (387)
T 2v1u_A 174 TNSLGFVENLEPRVKSSLG-EVELVFPPYTAPQLRDILETRAEEAFNPGVLD---PDVVPLCAALAAREHGDARRALDLL 249 (387)
T ss_dssp CSCSTTSSSSCHHHHTTTT-SEECCBCCCCHHHHHHHHHHHHHHHBCTTTBC---SSHHHHHHHHHHSSSCCHHHHHHHH
T ss_pred ECCCchHhhhCHHHHhcCC-CeEEeeCCCCHHHHHHHHHHHHHhhccCCCCC---HHHHHHHHHHHHHhccCHHHHHHHH
Confidence 87652 222221 1478999999999999999875321 111111 234677888887 9994 33333
Q ss_pred HHHhh-----cC--CCHHHHHHHHhccccccccCCCCchhhHHhcccCCCCccchhhhhhhhc-cCCCcceechhHHHHH
Q 047321 314 GNLLR-----SK--NTAKEWHIILDSEMWKVQEIGQGILAPLLLSYNDLPSNSMVKRCFSYCA-VFPKDYNMNKRELINL 385 (807)
Q Consensus 314 ~~~l~-----~~--~~~~~w~~~~~~~~~~~~~~~~~i~~~l~lsy~~L~~~~~~k~cfl~~s-~fp~~~~i~~~~li~~ 385 (807)
..... .. -+.+.+..+++... ...+.-++..|+. +.+..+..++ ++-....+....+.+.
T Consensus 250 ~~a~~~a~~~~~~~i~~~~v~~a~~~~~----------~~~~~~~~~~l~~--~~~~~l~a~~~~~~~~~~~~~~~~~~~ 317 (387)
T 2v1u_A 250 RVAGEIAERRREERVRREHVYSARAEIE----------RDRVSEVVRTLPL--HAKLVLLSIMMLEDGGRPASTGEIYER 317 (387)
T ss_dssp HHHHHHHHHTTCSCBCHHHHHHHHHHHH----------HHHHHHHHHSSCH--HHHHHHHHHHHHSSSSCCEEHHHHHHH
T ss_pred HHHHHHHHHcCCCCcCHHHHHHHHHHHh----------hchHHHHHHcCCH--HHHHHHHHHHHHhcCCCCCcHHHHHHH
Confidence 22221 11 25666666655421 1234556778888 6666665555 4432224444433333
Q ss_pred H----HhcCCCCCCCCchHHHHHHHHHHHHhhcCCcceec
Q 047321 386 W----MTQGYLNADEDEEMEMIGEEYFNILATRSFFQEFQ 421 (807)
Q Consensus 386 W----~aeg~i~~~~~~~~e~~~~~~~~~L~~rsll~~~~ 421 (807)
. -..| +.+ .....+.++++.|...|+++...
T Consensus 318 ~~~~~~~~~-~~~----~~~~~~~~~l~~L~~~gli~~~~ 352 (387)
T 2v1u_A 318 YKELTSTLG-LEH----VTLRRVSGIISELDMLGIVKSRV 352 (387)
T ss_dssp HHHHHHHTT-CCC----CCHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHhcC-CCC----CCHHHHHHHHHHHHhCCCeEEEe
Confidence 2 1223 111 12345678999999999998754
No 82
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.40 E-value=2.2e-12 Score=133.53 Aligned_cols=140 Identities=19% Similarity=0.222 Sum_probs=86.1
Q ss_pred ccCCCCCCeEEEEeeccCCCcchhhhhchhhHHHHHHhhcCCCCCCCC--CCCcc-cceEeccCCcCceeeCcccCCCCC
Q 047321 582 LYNQQNLLRLRLRFGRVVDGEDEERRRKNEKDKQLLEALQPPLSHLPP--LGKLP-LKKLELRDLESVKRVGNEFLGIEE 658 (807)
Q Consensus 582 l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~l~p~~~~lp~--l~~L~-L~~L~L~~~~~l~~i~~~~~~~~~ 658 (807)
+.++++|+.|++++|.+ ..+|+ ++.++ |++|+++++. ++.++...
T Consensus 105 ~~~l~~L~~L~L~~n~l--------------------------~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~----- 152 (272)
T 3rfs_A 105 FDKLTNLKELVLVENQL--------------------------QSLPDGVFDKLTNLTYLNLAHNQ-LQSLPKGV----- 152 (272)
T ss_dssp TTTCTTCCEEECTTSCC--------------------------CCCCTTTTTTCTTCCEEECCSSC-CCCCCTTT-----
T ss_pred hcCCcCCCEEECCCCcC--------------------------CccCHHHhccCCCCCEEECCCCc-cCccCHHH-----
Confidence 45566777777776664 23333 56677 7777777653 44433221
Q ss_pred CCCCCCCCCCCCCccccCcccccccccCCCccccchhhhccccCCCCCCcccEEEEccCCCCCCCccc-ccCCCCccEEe
Q 047321 659 SSEDDPSSSSSSPSVIAFPKLKSLEIDGMKELEEWNYRITRKENISIMPRLSSLQIMNCRKLKALPDY-LLQTIALQKLS 737 (807)
Q Consensus 659 l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~lp~~-l~~l~~L~~L~ 737 (807)
+..+++|+.|+++++ .+..++. ..+..+++|+.|++++| .+..+|.. +..+++|+.|+
T Consensus 153 --------------~~~l~~L~~L~l~~n-~l~~~~~-----~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~ 211 (272)
T 3rfs_A 153 --------------FDKLTNLTELDLSYN-QLQSLPE-----GVFDKLTQLKDLRLYQN-QLKSVPDGVFDRLTSLQYIW 211 (272)
T ss_dssp --------------TTTCTTCCEEECCSS-CCCCCCT-----TTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEE
T ss_pred --------------hccCccCCEEECCCC-CcCccCH-----HHhcCCccCCEEECCCC-cCCccCHHHHhCCcCCCEEE
Confidence 235677777777775 4554443 23456777777777777 55555543 56777777777
Q ss_pred eccCcccccccccccccCCCCCCCCeeeeccCCCcccCCccCCCCCcc
Q 047321 738 IYSCDLLEELPILEDRRTTDIPRLSSLAIWYCPKLKVLPDYLLRTTTL 785 (807)
Q Consensus 738 l~~c~~l~~lP~~~~~~~~~l~~L~~L~i~~c~~l~~lP~~l~~l~~L 785 (807)
+++|+-. +.+++|+.|+++.+...+.+|.+++.+...
T Consensus 212 l~~N~~~-----------~~~~~l~~l~~~~n~~~g~ip~~~~~~~~~ 248 (272)
T 3rfs_A 212 LHDNPWD-----------CTCPGIRYLSEWINKHSGVVRNSAGSVAPD 248 (272)
T ss_dssp CCSSCBC-----------CCTTTTHHHHHHHHHTGGGBBCTTSCBCGG
T ss_pred ccCCCcc-----------ccCcHHHHHHHHHHhCCCcccCcccccCCC
Confidence 7776421 345567777777666666777776665543
No 83
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.39 E-value=4.4e-12 Score=131.11 Aligned_cols=109 Identities=18% Similarity=0.245 Sum_probs=49.2
Q ss_pred cCcccccccccCCCccccchhhhccccCCCCCCcccEEEEccCCCCCCCccc-ccCCCCccEEeeccCcccccccccccc
Q 047321 675 AFPKLKSLEIDGMKELEEWNYRITRKENISIMPRLSSLQIMNCRKLKALPDY-LLQTIALQKLSIYSCDLLEELPILEDR 753 (807)
Q Consensus 675 ~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~lp~~-l~~l~~L~~L~l~~c~~l~~lP~~~~~ 753 (807)
.+++|+.|+++++ .+..++. ..+..+++|+.|++++| .+..+|.. +..+++|++|++++| .+..+|. .
T Consensus 107 ~l~~L~~L~l~~n-~l~~~~~-----~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~---~ 175 (270)
T 2o6q_A 107 QLVNLAELRLDRN-QLKSLPP-----RVFDSLTKLTYLSLGYN-ELQSLPKGVFDKLTSLKELRLYNN-QLKRVPE---G 175 (270)
T ss_dssp TCSSCCEEECCSS-CCCCCCT-----TTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS-CCSCCCT---T
T ss_pred cccCCCEEECCCC-ccCeeCH-----HHhCcCcCCCEEECCCC-cCCccCHhHccCCcccceeEecCC-cCcEeCh---h
Confidence 4455555555542 3333322 12334555555555555 44444433 344555555555543 3334330 1
Q ss_pred cCCCCCCCCeeeeccCCCcccCCc-cCCCCCcccccccccchh
Q 047321 754 RTTDIPRLSSLAIWYCPKLKVLPD-YLLRTTTLQAGEQDYENE 795 (807)
Q Consensus 754 ~~~~l~~L~~L~i~~c~~l~~lP~-~l~~l~~L~~L~l~~~~~ 795 (807)
.+..+++|++|++++| .++.+|. .+..+++|+.|++++|++
T Consensus 176 ~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~~ 217 (270)
T 2o6q_A 176 AFDKLTELKTLKLDNN-QLKRVPEGAFDSLEKLKMLQLQENPW 217 (270)
T ss_dssp TTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSSCB
T ss_pred HhccCCCcCEEECCCC-cCCcCCHHHhccccCCCEEEecCCCe
Confidence 2344455555555543 3344442 244455555555555543
No 84
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.39 E-value=8.4e-13 Score=139.59 Aligned_cols=159 Identities=17% Similarity=0.154 Sum_probs=116.7
Q ss_pred hccCCCCCCeEEEEeeccCCCcchhhhhchhhHHHHHHhhcCCCCCCC--CCCCcc-cceEeccCCcCcee--eCcccCC
Q 047321 581 QLYNQQNLLRLRLRFGRVVDGEDEERRRKNEKDKQLLEALQPPLSHLP--PLGKLP-LKKLELRDLESVKR--VGNEFLG 655 (807)
Q Consensus 581 ~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~l~p~~~~lp--~l~~L~-L~~L~L~~~~~l~~--i~~~~~~ 655 (807)
.+..+++|+.|+|+.|.+ ..+| .++.++ |++|+|+++..... ++....
T Consensus 140 ~~~~~~~L~~L~Ls~n~l--------------------------~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~- 192 (310)
T 4glp_A 140 QQWLKPGLKVLSIAQAHS--------------------------PAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALC- 192 (310)
T ss_dssp HTTBCSCCCEEEEECCSS--------------------------CCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSC-
T ss_pred HhhhccCCCEEEeeCCCc--------------------------chhhHHHhccCCCCCEEECCCCCCccchhhhHHHh-
Confidence 345788999999999885 2333 377889 99999998653322 111110
Q ss_pred CCCCCCCCCCCCCCCCccccCcccccccccCCCccccchhhhccccCCCCCCcccEEEEccCCCCCCC-cccccCC---C
Q 047321 656 IEESSEDDPSSSSSSPSVIAFPKLKSLEIDGMKELEEWNYRITRKENISIMPRLSSLQIMNCRKLKAL-PDYLLQT---I 731 (807)
Q Consensus 656 ~~~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~l-p~~l~~l---~ 731 (807)
...+++|+.|+++++ .++.++... ...+..+++|+.|++++| .+..+ |..+..+ +
T Consensus 193 -----------------~~~l~~L~~L~Ls~N-~l~~l~~~~--~~l~~~l~~L~~L~Ls~N-~l~~~~p~~~~~~~~~~ 251 (310)
T 4glp_A 193 -----------------PHKFPAIQNLALRNT-GMETPTGVC--AALAAAGVQPHSLDLSHN-SLRATVNPSAPRCMWSS 251 (310)
T ss_dssp -----------------TTSSCCCCSCBCCSS-CCCCHHHHH--HHHHHHTCCCSSEECTTS-CCCCCCCSCCSSCCCCT
T ss_pred -----------------hhcCCCCCEEECCCC-CCCchHHHH--HHHHhcCCCCCEEECCCC-CCCccchhhHHhccCcC
Confidence 247899999999986 565444300 001246799999999999 56665 8777766 6
Q ss_pred CccEEeeccCcccccccccccccCCCCCCCCeeeeccCCCcccCCccCCCCCcccccccccchhh
Q 047321 732 ALQKLSIYSCDLLEELPILEDRRTTDIPRLSSLAIWYCPKLKVLPDYLLRTTTLQAGEQDYENEK 796 (807)
Q Consensus 732 ~L~~L~l~~c~~l~~lP~~~~~~~~~l~~L~~L~i~~c~~l~~lP~~l~~l~~L~~L~l~~~~~~ 796 (807)
+|++|++++| .++.+| ..+ .++|+.|++++| .++.+|. +..+++|+.|++++|++.
T Consensus 252 ~L~~L~Ls~N-~l~~lp----~~~--~~~L~~L~Ls~N-~l~~~~~-~~~l~~L~~L~L~~N~l~ 307 (310)
T 4glp_A 252 ALNSLNLSFA-GLEQVP----KGL--PAKLRVLDLSSN-RLNRAPQ-PDELPEVDNLTLDGNPFL 307 (310)
T ss_dssp TCCCEECCSS-CCCSCC----SCC--CSCCSCEECCSC-CCCSCCC-TTSCCCCSCEECSSTTTS
T ss_pred cCCEEECCCC-CCCchh----hhh--cCCCCEEECCCC-cCCCCch-hhhCCCccEEECcCCCCC
Confidence 9999999986 677888 444 389999999984 6778875 788999999999999875
No 85
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.38 E-value=1e-12 Score=136.52 Aligned_cols=85 Identities=12% Similarity=0.228 Sum_probs=43.7
Q ss_pred ccCcccccccccCCCccccchhhhccccCCCCCCccc----EEEEccCCCCCCCcccccCCCCccEEeeccCcccccccc
Q 047321 674 IAFPKLKSLEIDGMKELEEWNYRITRKENISIMPRLS----SLQIMNCRKLKALPDYLLQTIALQKLSIYSCDLLEELPI 749 (807)
Q Consensus 674 ~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~l~~L~----~L~l~~c~~L~~lp~~l~~l~~L~~L~l~~c~~l~~lP~ 749 (807)
..+++|+.|+++++ .+..++. ..+..+++|+ .|+++++ .+..+|.......+|++|++++| .+..+|.
T Consensus 146 ~~l~~L~~L~Ls~N-~l~~~~~-----~~~~~l~~L~~l~l~L~ls~n-~l~~~~~~~~~~~~L~~L~L~~n-~l~~~~~ 217 (276)
T 2z62_A 146 SNLTNLEHLDLSSN-KIQSIYC-----TDLRVLHQMPLLNLSLDLSLN-PMNFIQPGAFKEIRLKELALDTN-QLKSVPD 217 (276)
T ss_dssp GGCTTCCEEECCSS-CCCEECG-----GGGHHHHTCTTCCEEEECCSS-CCCEECTTSSCSCCEEEEECCSS-CCSCCCT
T ss_pred ccCCCCCEEECCCC-CCCcCCH-----HHhhhhhhccccceeeecCCC-cccccCccccCCCcccEEECCCC-ceeecCH
Confidence 35666666666664 3443332 1122233333 5666665 45555554444456666666664 3555541
Q ss_pred cccccCCCCCCCCeeeeccC
Q 047321 750 LEDRRTTDIPRLSSLAIWYC 769 (807)
Q Consensus 750 ~~~~~~~~l~~L~~L~i~~c 769 (807)
..+..+++|+.|+++++
T Consensus 218 ---~~~~~l~~L~~L~l~~N 234 (276)
T 2z62_A 218 ---GIFDRLTSLQKIWLHTN 234 (276)
T ss_dssp ---TTTTTCCSCCEEECCSS
T ss_pred ---hHhcccccccEEEccCC
Confidence 22355666666666643
No 86
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.38 E-value=2.8e-14 Score=152.87 Aligned_cols=108 Identities=21% Similarity=0.281 Sum_probs=53.3
Q ss_pred cCc-ccccccccCCC-ccc--cchhhhccccCCCCCCcccEEEEccCCCCC-CCcccccCCCCccEEeeccCcccccccc
Q 047321 675 AFP-KLKSLEIDGMK-ELE--EWNYRITRKENISIMPRLSSLQIMNCRKLK-ALPDYLLQTIALQKLSIYSCDLLEELPI 749 (807)
Q Consensus 675 ~l~-~L~~L~l~~~~-~l~--~~~~~~~~~~~~~~l~~L~~L~l~~c~~L~-~lp~~l~~l~~L~~L~l~~c~~l~~lP~ 749 (807)
.++ +|+.|++++|. .+. .++. .+..+++|+.|++++|..++ ..+..+..+++|++|++++|..+....
T Consensus 192 ~l~~~L~~L~l~~~~~~~~~~~l~~------~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~- 264 (336)
T 2ast_B 192 HVSETITQLNLSGYRKNLQKSDLST------LVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPET- 264 (336)
T ss_dssp HSCTTCCEEECCSCGGGSCHHHHHH------HHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGG-
T ss_pred hcccCCCEEEeCCCcccCCHHHHHH------HHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHH-
Confidence 455 66666666653 232 1111 22345666666666664343 334455566666666666664221110
Q ss_pred cccccCCCCCCCCeeeeccCCCcccCCc-cCCCC-Ccccccccccchhh
Q 047321 750 LEDRRTTDIPRLSSLAIWYCPKLKVLPD-YLLRT-TTLQAGEQDYENEK 796 (807)
Q Consensus 750 ~~~~~~~~l~~L~~L~i~~c~~l~~lP~-~l~~l-~~L~~L~l~~~~~~ 796 (807)
+ ..+..+++|+.|++++| +|. .+..+ ..|..|++++|++.
T Consensus 265 ~--~~l~~~~~L~~L~l~~~-----i~~~~~~~l~~~l~~L~l~~n~l~ 306 (336)
T 2ast_B 265 L--LELGEIPTLKTLQVFGI-----VPDGTLQLLKEALPHLQINCSHFT 306 (336)
T ss_dssp G--GGGGGCTTCCEEECTTS-----SCTTCHHHHHHHSTTSEESCCCSC
T ss_pred H--HHHhcCCCCCEEeccCc-----cCHHHHHHHHhhCcceEEecccCc
Confidence 0 12445666666666665 332 22222 23555556666554
No 87
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.37 E-value=7.6e-12 Score=136.60 Aligned_cols=296 Identities=13% Similarity=0.062 Sum_probs=174.8
Q ss_pred CCccccccchHHHHHHHHhCCCCCCCCCceEEEEEccCCChHHHHHHHHHcCccccccc---ceEEEEEeCCCCCHHHHH
Q 047321 103 EGGVCGRVDEKNELLSKLLCGSSEQQKGLDVISLVGLGGIGKTTLAQLAYNNDEVKRNF---EKVIWVCVSNTFEEISVA 179 (807)
Q Consensus 103 ~~~~vGR~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f---~~~~wv~~~~~~~~~~~~ 179 (807)
+..++||+++++.+.+++..... ....+.+.|+|++|+||||||+.+++. ....+ ...+|+++....+...++
T Consensus 19 p~~~~gr~~e~~~l~~~l~~~~~--~~~~~~vli~G~~G~GKTtl~~~l~~~--~~~~~~~~~~~~~i~~~~~~~~~~~~ 94 (386)
T 2qby_A 19 PDELPHREDQIRKIASILAPLYR--EEKPNNIFIYGLTGTGKTAVVKFVLSK--LHKKFLGKFKHVYINTRQIDTPYRVL 94 (386)
T ss_dssp CSCCTTCHHHHHHHHHSSGGGGG--TCCCCCEEEEECTTSSHHHHHHHHHHH--HHHHTCSSCEEEEEEHHHHCSHHHHH
T ss_pred CCCCCChHHHHHHHHHHHHHHHc--CCCCCeEEEECCCCCCHHHHHHHHHHH--HHHHhcCCceEEEEECCCCCCHHHHH
Confidence 46799999999999998864211 124568999999999999999999873 33322 246678776666777788
Q ss_pred HHHHHHcCCCCC-CCccHHHHHHHHHHHHh--CCceEEEEeCCCCCC----ccChHHHHHhhcC-CCCCcEEEEEcCCHH
Q 047321 180 KAIIEGLGVSAF-GLSEFESLMKQIQEYIT--GKKIFLVLDDVWDGD----YKKWDPFFSCLKN-GHHESKILITTHDRS 251 (807)
Q Consensus 180 ~~i~~~l~~~~~-~~~~~~~~~~~l~~~l~--~k~~LlVlDdv~~~~----~~~~~~l~~~l~~-~~~gs~IliTTR~~~ 251 (807)
..++..++.... ...........+.+.+. +++.+||+||++.-. ...+..+...+.. ...+..+|+||+...
T Consensus 95 ~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~~l~~l~~~~~~~~~~~~~~I~~~~~~~ 174 (386)
T 2qby_A 95 ADLLESLDVKVPFTGLSIAELYRRLVKAVRDYGSQVVIVLDEIDAFVKKYNDDILYKLSRINSEVNKSKISFIGITNDVK 174 (386)
T ss_dssp HHHTTTTSCCCCSSSCCHHHHHHHHHHHHHTCCSCEEEEEETHHHHHHSSCSTHHHHHHHHHHSCCC--EEEEEEESCGG
T ss_pred HHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcChhhhhccCcCHHHHHHhhchhhcCCCeEEEEEEECCCC
Confidence 888777754322 12235555666666664 458999999995421 2233334443422 233556788888664
Q ss_pred HHHHhCC-------CceEeCCCCChhhHHHHHHHHHhccCCccCccchHHHHHHHHHHcC---CCHHHHHH-HHHHhh--
Q 047321 252 VALQLGS-------IDIIPVKELGEGECWLLFKQIAFLRRSFEDCEKLEPIGRKIASKCK---GLPLAAKV-IGNLLR-- 318 (807)
Q Consensus 252 v~~~~~~-------~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~~~~I~~~c~---glPLai~~-~~~~l~-- 318 (807)
....+.. ...+.+++++.++..+++.+.+..... ...-..++...|++.++ |.|..+.. +.....
T Consensus 175 ~~~~~~~~~~~r~~~~~i~l~~l~~~~~~~il~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~G~~r~~~~ll~~a~~~a 252 (386)
T 2qby_A 175 FVDLLDPRVKSSLSEEEIIFPPYNAEELEDILTKRAQMAFK--PGVLPDNVIKLCAALAAREHGDARRALDLLRVSGEIA 252 (386)
T ss_dssp GGGGCTTHHHHTTTTEEEEECCCCHHHHHHHHHHHHHHHBC--SSCSCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred hHhhhCHHHhccCCCeeEEeCCCCHHHHHHHHHHHHHhhcc--CCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Confidence 3222211 147999999999999999986532111 11122455677788887 99984433 322221
Q ss_pred ---c--CCCHHHHHHHHhccccccccCCCCchhhHHhcccCCCCccchhhhhhhhccCCC-c-ceechhHHHHHH--Hh-
Q 047321 319 ---S--KNTAKEWHIILDSEMWKVQEIGQGILAPLLLSYNDLPSNSMVKRCFSYCAVFPK-D-YNMNKRELINLW--MT- 388 (807)
Q Consensus 319 ---~--~~~~~~w~~~~~~~~~~~~~~~~~i~~~l~lsy~~L~~~~~~k~cfl~~s~fp~-~-~~i~~~~li~~W--~a- 388 (807)
. .-+.+.+..++.... ...+.-++..+|. +.+..+..++..-+ + ..+....+.+.. ++
T Consensus 253 ~~~~~~~i~~~~v~~a~~~~~----------~~~~~~~~~~l~~--~~~~il~ai~~~~~~g~~~~~~~~l~~~~~~~~~ 320 (386)
T 2qby_A 253 ERMKDTKVKEEYVYMAKEEIE----------RDRVRDIILTLPF--HSKLVLMAVVSISSEENVVSTTGAVYETYLNICK 320 (386)
T ss_dssp HHTTCSSCCHHHHHHHHHHHH----------HHHHHHHHHTSCH--HHHHHHHHHHHHC-----CEEHHHHHHHHHHHHH
T ss_pred HhcCCCccCHHHHHHHHHHHh----------hchHHHHHHcCCH--HHHHHHHHHHHHHhcCCCceeHHHHHHHHHHHHH
Confidence 1 124556655554321 1234555677877 66666665553211 1 123333332221 11
Q ss_pred -cCCCCCCCCchHHHHHHHHHHHHhhcCCcceec
Q 047321 389 -QGYLNADEDEEMEMIGEEYFNILATRSFFQEFQ 421 (807)
Q Consensus 389 -eg~i~~~~~~~~e~~~~~~~~~L~~rsll~~~~ 421 (807)
-| +.+. .......+++.|...|++....
T Consensus 321 ~~g-~~~~----~~~~~~~~l~~L~~~gli~~~~ 349 (386)
T 2qby_A 321 KLG-VEAV----TQRRVSDIINELDMVGILTAKV 349 (386)
T ss_dssp HHT-CCCC----CHHHHHHHHHHHHHHTSEEEEE
T ss_pred hcC-CCCC----CHHHHHHHHHHHHhCCCEEEEe
Confidence 12 1111 1234567899999999998653
No 88
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.37 E-value=7.6e-12 Score=130.62 Aligned_cols=54 Identities=7% Similarity=0.006 Sum_probs=39.2
Q ss_pred CcceEEEEEeeccCCCCccccCCCCceeEEEeCCCCCCCCCCCCccc-cccccCcccceeeecc
Q 047321 466 GDKVRHLGLKFEEGASFPMSIHGLNRLRTLLIYDQSPYNPSLSSSIL-PELFNKLACLRALVIR 528 (807)
Q Consensus 466 ~~~~r~L~l~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~l~~~i~~L-P~~i~~L~~L~~LdL~ 528 (807)
..+++.+++.++.++.+|..+. ++|++|++++| .+..+ |..+.++++|++|+|+
T Consensus 9 l~~l~~l~~~~~~l~~ip~~~~--~~l~~L~L~~N-------~l~~~~~~~~~~l~~L~~L~L~ 63 (290)
T 1p9a_G 9 VASHLEVNCDKRNLTALPPDLP--KDTTILHLSEN-------LLYTFSLATLMPYTRLTQLNLD 63 (290)
T ss_dssp STTCCEEECTTSCCSSCCSCCC--TTCCEEECTTS-------CCSEEEGGGGTTCTTCCEEECT
T ss_pred cCCccEEECCCCCCCcCCCCCC--CCCCEEEcCCC-------cCCccCHHHhhcCCCCCEEECC
Confidence 3457777777777777776664 67888888887 56665 4667888888888876
No 89
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.36 E-value=5.6e-15 Score=165.83 Aligned_cols=299 Identities=17% Similarity=0.147 Sum_probs=155.4
Q ss_pred CcceEEEEEeeccCCCC--ccccCCCCceeEEEeCCCCCCCCCCCCc-----cccccccCcccceeeecc----------
Q 047321 466 GDKVRHLGLKFEEGASF--PMSIHGLNRLRTLLIYDQSPYNPSLSSS-----ILPELFNKLACLRALVIR---------- 528 (807)
Q Consensus 466 ~~~~r~L~l~~~~~~~~--~~~~~~l~~Lr~L~l~~~~~~~l~~~i~-----~LP~~i~~L~~L~~LdL~---------- 528 (807)
+..+++|+++++.+... ...+..+++|++|++++| .+. .+|..+..+++|++|+|+
T Consensus 2 ~~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~-------~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~ 74 (461)
T 1z7x_W 2 SLDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDC-------GLTEARCKDISSALRVNPALAELNLRSNELGDVGVH 74 (461)
T ss_dssp CEEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESS-------CCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHH
T ss_pred CccceehhhhhcccCchhHHHHHhhcCCccEEEccCC-------CCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHH
Confidence 45788888888877542 233667888888888887 444 567788888888888887
Q ss_pred ---ccCC----ccCeeEecCccCCCcc--ccccccccccccCcccccCCCCCCCh-hHHHHhh-ccCCCCCCeEEEEeec
Q 047321 529 ---QSLR----TLEKFVVGGGVDGSNT--CRLESLKNLQLLRECGIEGLGNVSHL-DEAERLQ-LYNQQNLLRLRLRFGR 597 (807)
Q Consensus 529 ---~~L~----~L~~l~~~~~~~~~~~--~~i~~L~~L~~L~~L~i~~l~~~~~~-~~~~~~~-l~~l~~L~~L~L~~~~ 597 (807)
..+. +|+.++++++.+...+ .....+..+++|+.|.+++.. +... ....... .....+|++|++++|.
T Consensus 75 ~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~-i~~~~~~~l~~~l~~~~~~L~~L~L~~n~ 153 (461)
T 1z7x_W 75 CVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNL-LGDAGLQLLCEGLLDPQCRLEKLQLEYCS 153 (461)
T ss_dssp HHHHTTCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSB-CHHHHHHHHHHHHTSTTCCCCEEECTTSC
T ss_pred HHHHHHhhCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCc-CchHHHHHHHHHHhcCCCcceEEECCCCC
Confidence 2344 5777777766532111 123345566667776666522 1110 0111111 2234567777777665
Q ss_pred cCCCcchhhhhchhhHHHHHHhhcCCCCCCCCCCCcc-cceEeccCCcCceeeCcc---------cCCCCCCCCCCCCCC
Q 047321 598 VVDGEDEERRRKNEKDKQLLEALQPPLSHLPPLGKLP-LKKLELRDLESVKRVGNE---------FLGIEESSEDDPSSS 667 (807)
Q Consensus 598 ~~~~~~~~~~~~~~~~~~~l~~l~p~~~~lp~l~~L~-L~~L~L~~~~~l~~i~~~---------~~~~~~l~~~~~~~~ 667 (807)
+.... ....... +..++ |++|+++++. +...+.. ......|.+.++...
T Consensus 154 l~~~~-------~~~l~~~-------------l~~~~~L~~L~L~~n~-i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~ 212 (461)
T 1z7x_W 154 LSAAS-------CEPLASV-------------LRAKPDFKELTVSNND-INEAGVRVLCQGLKDSPCQLEALKLESCGVT 212 (461)
T ss_dssp CBGGG-------HHHHHHH-------------HHHCTTCCEEECCSSB-CHHHHHHHHHHHHHHSCCCCCEEECTTSCCB
T ss_pred CCHHH-------HHHHHHH-------------HhhCCCCCEEECcCCC-cchHHHHHHHHHHhcCCCCceEEEccCCCCc
Confidence 32100 0000111 22334 6666666543 2221110 012222333333222
Q ss_pred C-----CCCccccCcccccccccCCCccccchhhhccccCCCCCCcccEEEEccCCCCCC-----CcccccCCCCccEEe
Q 047321 668 S-----SSPSVIAFPKLKSLEIDGMKELEEWNYRITRKENISIMPRLSSLQIMNCRKLKA-----LPDYLLQTIALQKLS 737 (807)
Q Consensus 668 ~-----~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~-----lp~~l~~l~~L~~L~ 737 (807)
. .+..+..+++|+.|+++++ .+.......-.+.....+++|+.|++++| .++. +|..+..+++|++|+
T Consensus 213 ~~~~~~l~~~l~~~~~L~~L~Ls~n-~l~~~~~~~l~~~~~~~~~~L~~L~L~~n-~l~~~~~~~l~~~l~~~~~L~~L~ 290 (461)
T 1z7x_W 213 SDNCRDLCGIVASKASLRELALGSN-KLGDVGMAELCPGLLHPSSRLRTLWIWEC-GITAKGCGDLCRVLRAKESLKELS 290 (461)
T ss_dssp TTHHHHHHHHHHHCTTCCEEECCSS-BCHHHHHHHHHHHHTSTTCCCCEEECTTS-CCCHHHHHHHHHHHHHCTTCCEEE
T ss_pred HHHHHHHHHHHHhCCCccEEeccCC-cCChHHHHHHHHHHhcCCCCceEEECcCC-CCCHHHHHHHHHHHhhCCCcceEE
Confidence 2 1222345688888888876 34332110000011224778888888888 6665 566666677888888
Q ss_pred eccCccccccc--ccccccCCCCCCCCeeeeccCCCcc----cCCccCCCCCcccccccccchhh
Q 047321 738 IYSCDLLEELP--ILEDRRTTDIPRLSSLAIWYCPKLK----VLPDYLLRTTTLQAGEQDYENEK 796 (807)
Q Consensus 738 l~~c~~l~~lP--~~~~~~~~~l~~L~~L~i~~c~~l~----~lP~~l~~l~~L~~L~l~~~~~~ 796 (807)
+++|. +...+ .+........++|++|++++|..-. .+|..+..+++|+.|++++|.+.
T Consensus 291 Ls~n~-i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~ 354 (461)
T 1z7x_W 291 LAGNE-LGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLE 354 (461)
T ss_dssp CTTCC-CHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCH
T ss_pred CCCCC-CchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccc
Confidence 87763 33211 0000011123466666666654221 13445555566666666666554
No 90
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.35 E-value=3.8e-12 Score=131.77 Aligned_cols=181 Identities=18% Similarity=0.210 Sum_probs=120.2
Q ss_pred cccccccccccCcccccCCCCCCChhHHHHhhccCCCCCCeEEEEeeccCCCcchhhhhchhhHHHHHHhhcCCCCCCCC
Q 047321 550 RLESLKNLQLLRECGIEGLGNVSHLDEAERLQLYNQQNLLRLRLRFGRVVDGEDEERRRKNEKDKQLLEALQPPLSHLPP 629 (807)
Q Consensus 550 ~i~~L~~L~~L~~L~i~~l~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~l~p~~~~lp~ 629 (807)
.+..+..+.+|+.|.+.+.. +... ..+.++++|+.|++++|.+ ..+|+
T Consensus 55 ~~~~l~~l~~L~~L~l~~n~-l~~~-----~~l~~l~~L~~L~L~~n~l--------------------------~~~~~ 102 (272)
T 3rfs_A 55 SVQGIQYLPNVRYLALGGNK-LHDI-----SALKELTNLTYLILTGNQL--------------------------QSLPN 102 (272)
T ss_dssp CCTTGGGCTTCCEEECTTSC-CCCC-----GGGTTCTTCCEEECTTSCC--------------------------CCCCT
T ss_pred cccccccCCCCcEEECCCCC-CCCc-----hhhcCCCCCCEEECCCCcc--------------------------CccCh
Confidence 34456667777777766522 2221 1467788888888887764 33443
Q ss_pred --CCCcc-cceEeccCCcCceeeCcccCCCCCCCCCCCCCCCCCCccccCcccccccccCCCccccchhhhccccCCCCC
Q 047321 630 --LGKLP-LKKLELRDLESVKRVGNEFLGIEESSEDDPSSSSSSPSVIAFPKLKSLEIDGMKELEEWNYRITRKENISIM 706 (807)
Q Consensus 630 --l~~L~-L~~L~L~~~~~l~~i~~~~~~~~~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~l 706 (807)
++.++ |++|+++++. ++.++... +..+++|+.|+++++ .+..++. ..+..+
T Consensus 103 ~~~~~l~~L~~L~L~~n~-l~~~~~~~-------------------~~~l~~L~~L~L~~n-~l~~~~~-----~~~~~l 156 (272)
T 3rfs_A 103 GVFDKLTNLKELVLVENQ-LQSLPDGV-------------------FDKLTNLTYLNLAHN-QLQSLPK-----GVFDKL 156 (272)
T ss_dssp TTTTTCTTCCEEECTTSC-CCCCCTTT-------------------TTTCTTCCEEECCSS-CCCCCCT-----TTTTTC
T ss_pred hHhcCCcCCCEEECCCCc-CCccCHHH-------------------hccCCCCCEEECCCC-ccCccCH-----HHhccC
Confidence 67778 8888887754 44433221 346788888888875 5665553 234578
Q ss_pred CcccEEEEccCCCCCCCccc-ccCCCCccEEeeccCcccccccccccccCCCCCCCCeeeeccCCCcccCCccCCCCCcc
Q 047321 707 PRLSSLQIMNCRKLKALPDY-LLQTIALQKLSIYSCDLLEELPILEDRRTTDIPRLSSLAIWYCPKLKVLPDYLLRTTTL 785 (807)
Q Consensus 707 ~~L~~L~l~~c~~L~~lp~~-l~~l~~L~~L~l~~c~~l~~lP~~~~~~~~~l~~L~~L~i~~c~~l~~lP~~l~~l~~L 785 (807)
++|+.|++++| ++..+|.. +..+++|+.|++++| .+..+|. ..+..+++|+.|++++|+.. +.++.|
T Consensus 157 ~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~---~~~~~l~~L~~L~l~~N~~~-------~~~~~l 224 (272)
T 3rfs_A 157 TNLTELDLSYN-QLQSLPEGVFDKLTQLKDLRLYQN-QLKSVPD---GVFDRLTSLQYIWLHDNPWD-------CTCPGI 224 (272)
T ss_dssp TTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS-CCSCCCT---TTTTTCTTCCEEECCSSCBC-------CCTTTT
T ss_pred ccCCEEECCCC-CcCccCHHHhcCCccCCEEECCCC-cCCccCH---HHHhCCcCCCEEEccCCCcc-------ccCcHH
Confidence 88888888888 67677654 577888888888886 4555551 34577888888888887543 335568
Q ss_pred cccccccchhhhhhh
Q 047321 786 QAGEQDYENEKFSQR 800 (807)
Q Consensus 786 ~~L~l~~~~~~~~~~ 800 (807)
+.++++.|.+....|
T Consensus 225 ~~l~~~~n~~~g~ip 239 (272)
T 3rfs_A 225 RYLSEWINKHSGVVR 239 (272)
T ss_dssp HHHHHHHHHTGGGBB
T ss_pred HHHHHHHHhCCCccc
Confidence 888888887776554
No 91
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.30 E-value=5.4e-12 Score=130.95 Aligned_cols=200 Identities=17% Similarity=0.230 Sum_probs=140.1
Q ss_pred CCcceEEEEEeeccCCCCcc-ccCCCCceeEEEeCCCCCCCCCCCCccccc-cccCcccceeeecccc-CCccCeeEecC
Q 047321 465 FGDKVRHLGLKFEEGASFPM-SIHGLNRLRTLLIYDQSPYNPSLSSSILPE-LFNKLACLRALVIRQS-LRTLEKFVVGG 541 (807)
Q Consensus 465 ~~~~~r~L~l~~~~~~~~~~-~~~~l~~Lr~L~l~~~~~~~l~~~i~~LP~-~i~~L~~L~~LdL~~~-L~~L~~l~~~~ 541 (807)
.+..+++|++++|.+..++. .+.++++|++|++++| .+..+|. .++++++|++|+++.+ +..+
T Consensus 26 l~~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n-------~l~~~~~~~~~~l~~L~~L~L~~n~l~~~------- 91 (276)
T 2z62_A 26 LPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRC-------EIQTIEDGAYQSLSHLSTLILTGNPIQSL------- 91 (276)
T ss_dssp SCTTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTC-------CCCEECTTTTTTCTTCCEEECTTCCCCEE-------
T ss_pred CCCCccEEECCCCcccccCHhHhccccCCcEEECCCC-------cCCccCHHHccCCcCCCEEECCCCccCcc-------
Confidence 35689999999999887554 7889999999999998 7777764 7899999999999833 2211
Q ss_pred ccCCCccccccccccccccCcccccCCCCCCChhHHHHhhccCCCCCCeEEEEeeccCCCcchhhhhchhhHHHHHHhhc
Q 047321 542 GVDGSNTCRLESLKNLQLLRECGIEGLGNVSHLDEAERLQLYNQQNLLRLRLRFGRVVDGEDEERRRKNEKDKQLLEALQ 621 (807)
Q Consensus 542 ~~~~~~~~~i~~L~~L~~L~~L~i~~l~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~l~ 621 (807)
....+.++.+|+.|.+.+.. +.. .....+.++++|+.|+++.|.+..
T Consensus 92 --------~~~~~~~l~~L~~L~l~~n~-l~~---~~~~~~~~l~~L~~L~l~~n~l~~--------------------- 138 (276)
T 2z62_A 92 --------ALGAFSGLSSLQKLVAVETN-LAS---LENFPIGHLKTLKELNVAHNLIQS--------------------- 138 (276)
T ss_dssp --------CTTTTTTCTTCCEEECTTSC-CCC---STTCCCTTCTTCCEEECCSSCCCC---------------------
T ss_pred --------ChhhhcCCccccEEECCCCC-ccc---cCchhcccCCCCCEEECcCCccce---------------------
Confidence 12234556666666655421 111 111137788999999999887421
Q ss_pred CCCCCCCC-CCCcc-cceEeccCCcCceeeCcccCCCCCCCCCCCCCCCCCCccccCcccc----cccccCCCccccchh
Q 047321 622 PPLSHLPP-LGKLP-LKKLELRDLESVKRVGNEFLGIEESSEDDPSSSSSSPSVIAFPKLK----SLEIDGMKELEEWNY 695 (807)
Q Consensus 622 p~~~~lp~-l~~L~-L~~L~L~~~~~l~~i~~~~~~~~~l~~~~~~~~~~~~~~~~l~~L~----~L~l~~~~~l~~~~~ 695 (807)
..+|. ++.++ |++|+++++. ++.++... +..+++|+ .|+++++ .+..++.
T Consensus 139 ---~~l~~~~~~l~~L~~L~Ls~N~-l~~~~~~~-------------------~~~l~~L~~l~l~L~ls~n-~l~~~~~ 194 (276)
T 2z62_A 139 ---FKLPEYFSNLTNLEHLDLSSNK-IQSIYCTD-------------------LRVLHQMPLLNLSLDLSLN-PMNFIQP 194 (276)
T ss_dssp ---CCCCGGGGGCTTCCEEECCSSC-CCEECGGG-------------------GHHHHTCTTCCEEEECCSS-CCCEECT
T ss_pred ---ecCchhhccCCCCCEEECCCCC-CCcCCHHH-------------------hhhhhhccccceeeecCCC-cccccCc
Confidence 12443 77889 9999999854 56554321 23455555 6778774 5666554
Q ss_pred hhccccCCCCCCcccEEEEccCCCCCCCccc-ccCCCCccEEeeccCc
Q 047321 696 RITRKENISIMPRLSSLQIMNCRKLKALPDY-LLQTIALQKLSIYSCD 742 (807)
Q Consensus 696 ~~~~~~~~~~l~~L~~L~l~~c~~L~~lp~~-l~~l~~L~~L~l~~c~ 742 (807)
.....++|+.|++++| .++.+|.. +..+++|+.|++++++
T Consensus 195 ------~~~~~~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~l~~N~ 235 (276)
T 2z62_A 195 ------GAFKEIRLKELALDTN-QLKSVPDGIFDRLTSLQKIWLHTNP 235 (276)
T ss_dssp ------TSSCSCCEEEEECCSS-CCSCCCTTTTTTCCSCCEEECCSSC
T ss_pred ------cccCCCcccEEECCCC-ceeecCHhHhcccccccEEEccCCc
Confidence 3334568999999999 68888865 5789999999999865
No 92
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.26 E-value=3.9e-13 Score=143.93 Aligned_cols=225 Identities=14% Similarity=0.078 Sum_probs=151.0
Q ss_pred cceEEEEEeeccCCCCccccCCC--CceeEEEeCCCCCCCCCCCCccccccccCcccceeeeccccCCccCeeEecCccC
Q 047321 467 DKVRHLGLKFEEGASFPMSIHGL--NRLRTLLIYDQSPYNPSLSSSILPELFNKLACLRALVIRQSLRTLEKFVVGGGVD 544 (807)
Q Consensus 467 ~~~r~L~l~~~~~~~~~~~~~~l--~~Lr~L~l~~~~~~~l~~~i~~LP~~i~~L~~L~~LdL~~~L~~L~~l~~~~~~~ 544 (807)
...++++++++.+. +..+..+ +++++|++.++ .+...+..+.++++|++|+++.+
T Consensus 47 ~~~~~l~l~~~~~~--~~~~~~~~~~~l~~L~l~~n-------~l~~~~~~~~~~~~L~~L~L~~~-------------- 103 (336)
T 2ast_B 47 SLWQTLDLTGKNLH--PDVTGRLLSQGVIAFRCPRS-------FMDQPLAEHFSPFRVQHMDLSNS-------------- 103 (336)
T ss_dssp TTSSEEECTTCBCC--HHHHHHHHHTTCSEEECTTC-------EECSCCCSCCCCBCCCEEECTTC--------------
T ss_pred hhheeeccccccCC--HHHHHhhhhccceEEEcCCc-------cccccchhhccCCCCCEEEccCC--------------
Confidence 34667777776655 4555555 77888888876 55656555667777777777511
Q ss_pred CCccccccccccccccCcccccCCCCCCChhHHHHhhccCCCCCCeEEEEeeccCCCcchhhhhchhhHHHHHHhhcCCC
Q 047321 545 GSNTCRLESLKNLQLLRECGIEGLGNVSHLDEAERLQLYNQQNLLRLRLRFGRVVDGEDEERRRKNEKDKQLLEALQPPL 624 (807)
Q Consensus 545 ~~~~~~i~~L~~L~~L~~L~i~~l~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~l~p~~ 624 (807)
.+ . .......+..+++|++|++++|.+.+ ....
T Consensus 104 -----~l--------------------~--~~~~~~~~~~~~~L~~L~L~~~~l~~--------------~~~~------ 136 (336)
T 2ast_B 104 -----VI--------------------E--VSTLHGILSQCSKLQNLSLEGLRLSD--------------PIVN------ 136 (336)
T ss_dssp -----EE--------------------C--HHHHHHHHTTBCCCSEEECTTCBCCH--------------HHHH------
T ss_pred -----Cc--------------------C--HHHHHHHHhhCCCCCEEeCcCcccCH--------------HHHH------
Confidence 00 0 01123345667788888887776310 0011
Q ss_pred CCCCCCCCcc-cceEeccCCcCcee--eCcccCCCCCCCCCCCCCCCCCCccccCcccccccccCCCccccchhhhcccc
Q 047321 625 SHLPPLGKLP-LKKLELRDLESVKR--VGNEFLGIEESSEDDPSSSSSSPSVIAFPKLKSLEIDGMKELEEWNYRITRKE 701 (807)
Q Consensus 625 ~~lp~l~~L~-L~~L~L~~~~~l~~--i~~~~~~~~~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~ 701 (807)
.++.++ |++|+|++|..++. ++.. +..+++|+.|++++|..+..... +.
T Consensus 137 ----~l~~~~~L~~L~L~~~~~l~~~~l~~~--------------------~~~~~~L~~L~l~~~~~l~~~~~----~~ 188 (336)
T 2ast_B 137 ----TLAKNSNLVRLNLSGCSGFSEFALQTL--------------------LSSCSRLDELNLSWCFDFTEKHV----QV 188 (336)
T ss_dssp ----HHTTCTTCSEEECTTCBSCCHHHHHHH--------------------HHHCTTCCEEECCCCTTCCHHHH----HH
T ss_pred ----HHhcCCCCCEEECCCCCCCCHHHHHHH--------------------HhcCCCCCEEcCCCCCCcChHHH----HH
Confidence 134567 89999988755542 2211 34789999999999867764221 12
Q ss_pred CCCCCC-cccEEEEccCC-CC--CCCcccccCCCCccEEeeccCcccc-cccccccccCCCCCCCCeeeeccCCCcccC-
Q 047321 702 NISIMP-RLSSLQIMNCR-KL--KALPDYLLQTIALQKLSIYSCDLLE-ELPILEDRRTTDIPRLSSLAIWYCPKLKVL- 775 (807)
Q Consensus 702 ~~~~l~-~L~~L~l~~c~-~L--~~lp~~l~~l~~L~~L~l~~c~~l~-~lP~~~~~~~~~l~~L~~L~i~~c~~l~~l- 775 (807)
.+..+| +|+.|++++|. .+ ..+|..+..+++|++|++++|..+. ..+ ..+..+++|++|++++|..+..-
T Consensus 189 ~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~----~~l~~l~~L~~L~l~~~~~~~~~~ 264 (336)
T 2ast_B 189 AVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCF----QEFFQLNYLQHLSLSRCYDIIPET 264 (336)
T ss_dssp HHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGG----GGGGGCTTCCEEECTTCTTCCGGG
T ss_pred HHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHH----HHHhCCCCCCEeeCCCCCCCCHHH
Confidence 345688 99999999995 34 4567777789999999999997554 444 56678899999999999743311
Q ss_pred CccCCCCCcccccccccc
Q 047321 776 PDYLLRTTTLQAGEQDYE 793 (807)
Q Consensus 776 P~~l~~l~~L~~L~l~~~ 793 (807)
...+.++++|+.|++++|
T Consensus 265 ~~~l~~~~~L~~L~l~~~ 282 (336)
T 2ast_B 265 LLELGEIPTLKTLQVFGI 282 (336)
T ss_dssp GGGGGGCTTCCEEECTTS
T ss_pred HHHHhcCCCCCEEeccCc
Confidence 125788999999999999
No 93
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.26 E-value=3.1e-13 Score=147.80 Aligned_cols=275 Identities=12% Similarity=0.043 Sum_probs=164.1
Q ss_pred CCCccccCCCCceeEEEeCCCCCCCCCCCCcc-----ccccccCcccceeeecccc-CCccCeeEecCccCCCccccccc
Q 047321 480 ASFPMSIHGLNRLRTLLIYDQSPYNPSLSSSI-----LPELFNKLACLRALVIRQS-LRTLEKFVVGGGVDGSNTCRLES 553 (807)
Q Consensus 480 ~~~~~~~~~l~~Lr~L~l~~~~~~~l~~~i~~-----LP~~i~~L~~L~~LdL~~~-L~~L~~l~~~~~~~~~~~~~i~~ 553 (807)
..++..+..+++|++|++++| .+.. ++..+.++++|++|+|+.+ +..+..-.-. ........
T Consensus 22 ~~l~~~l~~~~~L~~L~L~~n-------~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~-----~~~~l~~~ 89 (386)
T 2ca6_A 22 KSVFAVLLEDDSVKEIVLSGN-------TIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPE-----ALRLLLQA 89 (386)
T ss_dssp HTTSHHHHHCSCCCEEECTTS-------EECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHH-----HHHHHHHH
T ss_pred HHHHHHHhcCCCccEEECCCC-------CCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhH-----HHHHHHHH
Confidence 336677778888999999887 4433 5556778888999988721 1111100000 00001122
Q ss_pred cccccccCcccccCCCCCCChhHHHHhhccCCCCCCeEEEEeeccCCCcchhhhhchhhHHHHHHhhcCCCCCCCCCCCc
Q 047321 554 LKNLQLLRECGIEGLGNVSHLDEAERLQLYNQQNLLRLRLRFGRVVDGEDEERRRKNEKDKQLLEALQPPLSHLPPLGKL 633 (807)
Q Consensus 554 L~~L~~L~~L~i~~l~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~l~p~~~~lp~l~~L 633 (807)
+..+.+|+.|.+++..--..........+.++++|+.|+|++|.+.. .........+..+... .+ -+..
T Consensus 90 l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~-------~~~~~l~~~l~~l~~~--~~--~~~~ 158 (386)
T 2ca6_A 90 LLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGP-------QAGAKIARALQELAVN--KK--AKNA 158 (386)
T ss_dssp HTTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHH-------HHHHHHHHHHHHHHHH--HH--HHTC
T ss_pred HhhCCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCH-------HHHHHHHHHHHHHhhh--hh--cccC
Confidence 35667777777765321111122455567888999999999887410 0000111111111000 00 0001
Q ss_pred c-cceEeccCCcCceeeCcccCCCCCCCCCCCCCCCCCCccccCcccccccccCCCccccchhhhccccCCCCCCcccEE
Q 047321 634 P-LKKLELRDLESVKRVGNEFLGIEESSEDDPSSSSSSPSVIAFPKLKSLEIDGMKELEEWNYRITRKENISIMPRLSSL 712 (807)
Q Consensus 634 ~-L~~L~L~~~~~l~~i~~~~~~~~~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~l~~L~~L 712 (807)
+ |++|+|+++. ++..+.... ...+..+++|+.|++++| .+.........+..+..+++|+.|
T Consensus 159 ~~L~~L~L~~n~-l~~~~~~~l---------------~~~l~~~~~L~~L~L~~n-~l~~~g~~~l~~~~l~~~~~L~~L 221 (386)
T 2ca6_A 159 PPLRSIICGRNR-LENGSMKEW---------------AKTFQSHRLLHTVKMVQN-GIRPEGIEHLLLEGLAYCQELKVL 221 (386)
T ss_dssp CCCCEEECCSSC-CTGGGHHHH---------------HHHHHHCTTCCEEECCSS-CCCHHHHHHHHHTTGGGCTTCCEE
T ss_pred CCCcEEECCCCC-CCcHHHHHH---------------HHHHHhCCCcCEEECcCC-CCCHhHHHHHHHHHhhcCCCccEE
Confidence 6 9999998864 321110000 001346789999999987 454211000001245578999999
Q ss_pred EEccCCCC-----CCCcccccCCCCccEEeeccCccccc-----ccccccccC--CCCCCCCeeeeccCCCcc----cCC
Q 047321 713 QIMNCRKL-----KALPDYLLQTIALQKLSIYSCDLLEE-----LPILEDRRT--TDIPRLSSLAIWYCPKLK----VLP 776 (807)
Q Consensus 713 ~l~~c~~L-----~~lp~~l~~l~~L~~L~l~~c~~l~~-----lP~~~~~~~--~~l~~L~~L~i~~c~~l~----~lP 776 (807)
++++| .+ ..+|..+..+++|++|+|++|. +.. +| ..+ ..+++|++|++++|..-. .+|
T Consensus 222 ~Ls~n-~l~~~g~~~l~~~l~~~~~L~~L~L~~n~-i~~~~~~~l~----~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~ 295 (386)
T 2ca6_A 222 DLQDN-TFTHLGSSALAIALKSWPNLRELGLNDCL-LSARGAAAVV----DAFSKLENIGLQTLRLQYNEIELDAVRTLK 295 (386)
T ss_dssp ECCSS-CCHHHHHHHHHHHGGGCTTCCEEECTTCC-CCHHHHHHHH----HHHHTCSSCCCCEEECCSSCCBHHHHHHHH
T ss_pred ECcCC-CCCcHHHHHHHHHHccCCCcCEEECCCCC-CchhhHHHHH----HHHhhccCCCeEEEECcCCcCCHHHHHHHH
Confidence 99999 46 5678888899999999999985 433 34 333 448999999999876433 388
Q ss_pred ccC-CCCCcccccccccchhhhhhh
Q 047321 777 DYL-LRTTTLQAGEQDYENEKFSQR 800 (807)
Q Consensus 777 ~~l-~~l~~L~~L~l~~~~~~~~~~ 800 (807)
..+ .++++|+.|++++|++....+
T Consensus 296 ~~l~~~l~~L~~L~l~~N~l~~~~~ 320 (386)
T 2ca6_A 296 TVIDEKMPDLLFLELNGNRFSEEDD 320 (386)
T ss_dssp HHHHHHCTTCCEEECTTSBSCTTSH
T ss_pred HHHHhcCCCceEEEccCCcCCcchh
Confidence 777 678999999999999876553
No 94
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=99.26 E-value=1.1e-10 Score=118.43 Aligned_cols=197 Identities=16% Similarity=0.136 Sum_probs=120.8
Q ss_pred CccccccchHHHHHHHHhCCCCCCCCCceEEEEEccCCChHHHHHHHHHcCcccccccceEEEEEeCCCCCHHHHHHHHH
Q 047321 104 GGVCGRVDEKNELLSKLLCGSSEQQKGLDVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSNTFEEISVAKAII 183 (807)
Q Consensus 104 ~~~vGR~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 183 (807)
.+++||++.++.+..++.... ..+.+.|+|++|+||||+|+.+++.......+. ......... ...+.
T Consensus 23 ~~~~g~~~~~~~l~~~l~~~~-----~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~------~~~~~~~~~-~~~~~ 90 (250)
T 1njg_A 23 ADVVGQEHVLTALANGLSLGR-----IHHAYLFSGTRGVGKTSIARLLAKGLNCETGIT------ATPCGVCDN-CREIE 90 (250)
T ss_dssp GGCCSCHHHHHHHHHHHHHTC-----CCSEEEEECSTTSCHHHHHHHHHHHHHCTTCSC------SSCCSCSHH-HHHHH
T ss_pred HHHhCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCC------CCCCcccHH-HHHHh
Confidence 469999999999999997532 335889999999999999999986321111100 000000000 00010
Q ss_pred HHcCC-----CCCCCccHHHHHHHHHHH-----HhCCceEEEEeCCCCCCccChHHHHHhhcCCCCCcEEEEEcCCHHH-
Q 047321 184 EGLGV-----SAFGLSEFESLMKQIQEY-----ITGKKIFLVLDDVWDGDYKKWDPFFSCLKNGHHESKILITTHDRSV- 252 (807)
Q Consensus 184 ~~l~~-----~~~~~~~~~~~~~~l~~~-----l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~IliTTR~~~v- 252 (807)
..... ........+... .+.+. ..+++.+||+||++.-+...+..+...+.....+..+|+||+....
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~vlviDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~t~~~~~~ 169 (250)
T 1njg_A 91 QGRFVDLIEIDAASRTKVEDTR-DLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKL 169 (250)
T ss_dssp TTCCSSEEEEETTCGGGHHHHH-HHHHSCCCSCSSSSSEEEEEETGGGSCHHHHHHHHHHHHSCCTTEEEEEEESCGGGS
T ss_pred ccCCcceEEecCcccccHHHHH-HHHHHhhhchhcCCceEEEEECcccccHHHHHHHHHHHhcCCCceEEEEEeCChHhC
Confidence 00000 000001111111 11111 1346899999999765566677787777766677888988876531
Q ss_pred HH-HhCCCceEeCCCCChhhHHHHHHHHHhccCCccCccchHHHHHHHHHHcCCCHHHHHHHHHHh
Q 047321 253 AL-QLGSIDIIPVKELGEGECWLLFKQIAFLRRSFEDCEKLEPIGRKIASKCKGLPLAAKVIGNLL 317 (807)
Q Consensus 253 ~~-~~~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~~~~I~~~c~glPLai~~~~~~l 317 (807)
.. .......+++++++.++..+++...+...+.. --.+....|++.|+|.|..+..+...+
T Consensus 170 ~~~l~~r~~~i~l~~l~~~e~~~~l~~~~~~~~~~----~~~~~~~~l~~~~~G~~~~~~~~~~~~ 231 (250)
T 1njg_A 170 PVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIA----HEPRALQLLARAAEGSLRDALSLTDQA 231 (250)
T ss_dssp CHHHHTTSEEEECCCCCHHHHHHHHHHHHHHTTCC----BCHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred CHHHHHHhhhccCCCCCHHHHHHHHHHHHHhcCCC----CCHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 11 11224589999999999999999887543221 124567899999999999988776543
No 95
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.25 E-value=9.2e-14 Score=155.86 Aligned_cols=119 Identities=24% Similarity=0.179 Sum_probs=75.6
Q ss_pred ccCcccccccccCCCccccchhhhccccCCCCCCcccEEEEccCCCCCC-----CcccccCCCCccEEeeccCcccccc-
Q 047321 674 IAFPKLKSLEIDGMKELEEWNYRITRKENISIMPRLSSLQIMNCRKLKA-----LPDYLLQTIALQKLSIYSCDLLEEL- 747 (807)
Q Consensus 674 ~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~-----lp~~l~~l~~L~~L~l~~c~~l~~l- 747 (807)
..+++|+.|+++++ .+.......-........++|+.|++++| .+.. +|..+..+++|++|++++| .+...
T Consensus 281 ~~~~~L~~L~Ls~n-~i~~~~~~~l~~~l~~~~~~L~~L~L~~n-~l~~~~~~~l~~~l~~~~~L~~L~Ls~n-~i~~~~ 357 (461)
T 1z7x_W 281 RAKESLKELSLAGN-ELGDEGARLLCETLLEPGCQLESLWVKSC-SFTAACCSHFSSVLAQNRFLLELQISNN-RLEDAG 357 (461)
T ss_dssp HHCTTCCEEECTTC-CCHHHHHHHHHHHHTSTTCCCCEEECTTS-CCBGGGHHHHHHHHHHCSSCCEEECCSS-BCHHHH
T ss_pred hhCCCcceEECCCC-CCchHHHHHHHHHhccCCccceeeEcCCC-CCchHHHHHHHHHHhhCCCccEEEccCC-cccccc
Confidence 35788888888875 34322110000001123468999999988 4543 4556677889999999887 34432
Q ss_pred c-ccccccCC-CCCCCCeeeeccCCCcc-----cCCccCCCCCcccccccccchhhh
Q 047321 748 P-ILEDRRTT-DIPRLSSLAIWYCPKLK-----VLPDYLLRTTTLQAGEQDYENEKF 797 (807)
Q Consensus 748 P-~~~~~~~~-~l~~L~~L~i~~c~~l~-----~lP~~l~~l~~L~~L~l~~~~~~~ 797 (807)
+ .+. ..+. ..++|++|++++|. ++ .+|..+..+++|+.|++++|++..
T Consensus 358 ~~~l~-~~l~~~~~~L~~L~L~~n~-i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~~ 412 (461)
T 1z7x_W 358 VRELC-QGLGQPGSVLRVLWLADCD-VSDSSCSSLAATLLANHSLRELDLSNNCLGD 412 (461)
T ss_dssp HHHHH-HHHTSTTCCCCEEECTTSC-CCHHHHHHHHHHHHHCCCCCEEECCSSSCCH
T ss_pred HHHHH-HHHcCCCCceEEEECCCCC-CChhhHHHHHHHHHhCCCccEEECCCCCCCH
Confidence 1 000 1111 26789999999875 44 678888888899999999998754
No 96
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.25 E-value=6.8e-12 Score=122.98 Aligned_cols=152 Identities=14% Similarity=0.134 Sum_probs=119.2
Q ss_pred CCCCCCeEEEEeeccCCCcchhhhhchhhHHHHHHhhcCCCCCCCCCCCcc-cceEeccCCcCceeeCcccCCCCCCCCC
Q 047321 584 NQQNLLRLRLRFGRVVDGEDEERRRKNEKDKQLLEALQPPLSHLPPLGKLP-LKKLELRDLESVKRVGNEFLGIEESSED 662 (807)
Q Consensus 584 ~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~l~p~~~~lp~l~~L~-L~~L~L~~~~~l~~i~~~~~~~~~l~~~ 662 (807)
.+++|+.|++++|.+ ..+|.+..++ |++|+++++ .++.++
T Consensus 42 ~l~~L~~L~l~~n~i--------------------------~~l~~l~~l~~L~~L~l~~n-~~~~~~------------ 82 (197)
T 4ezg_A 42 QMNSLTYITLANINV--------------------------TDLTGIEYAHNIKDLTINNI-HATNYN------------ 82 (197)
T ss_dssp HHHTCCEEEEESSCC--------------------------SCCTTGGGCTTCSEEEEESC-CCSCCG------------
T ss_pred hcCCccEEeccCCCc--------------------------cChHHHhcCCCCCEEEccCC-CCCcch------------
Confidence 456899999998875 4567788889 999999987 343332
Q ss_pred CCCCCCCCCccccCcccccccccCCCccccchhhhccccCCCCCCcccEEEEccCCCCC-CCcccccCCCCccEEeeccC
Q 047321 663 DPSSSSSSPSVIAFPKLKSLEIDGMKELEEWNYRITRKENISIMPRLSSLQIMNCRKLK-ALPDYLLQTIALQKLSIYSC 741 (807)
Q Consensus 663 ~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~L~-~lp~~l~~l~~L~~L~l~~c 741 (807)
.+..+++|+.|+++++ .+.... +..+..+++|+.|++++| .+. ..|..+..+++|++|++++|
T Consensus 83 ---------~l~~l~~L~~L~l~~n-~l~~~~-----~~~l~~l~~L~~L~Ls~n-~i~~~~~~~l~~l~~L~~L~L~~n 146 (197)
T 4ezg_A 83 ---------PISGLSNLERLRIMGK-DVTSDK-----IPNLSGLTSLTLLDISHS-AHDDSILTKINTLPKVNSIDLSYN 146 (197)
T ss_dssp ---------GGTTCTTCCEEEEECT-TCBGGG-----SCCCTTCTTCCEEECCSS-BCBGGGHHHHTTCSSCCEEECCSC
T ss_pred ---------hhhcCCCCCEEEeECC-ccCccc-----ChhhcCCCCCCEEEecCC-ccCcHhHHHHhhCCCCCEEEccCC
Confidence 1457899999999985 454422 235678999999999999 454 46778899999999999998
Q ss_pred cccccccccccccCCCCCCCCeeeeccCCCcccCCccCCCCCcccccccccchhhh
Q 047321 742 DLLEELPILEDRRTTDIPRLSSLAIWYCPKLKVLPDYLLRTTTLQAGEQDYENEKF 797 (807)
Q Consensus 742 ~~l~~lP~~~~~~~~~l~~L~~L~i~~c~~l~~lP~~l~~l~~L~~L~l~~~~~~~ 797 (807)
..+..+| .+..+++|++|++++| .++.+| .+.++++|+.|++++|++..
T Consensus 147 ~~i~~~~-----~l~~l~~L~~L~l~~n-~i~~~~-~l~~l~~L~~L~l~~N~i~~ 195 (197)
T 4ezg_A 147 GAITDIM-----PLKTLPELKSLNIQFD-GVHDYR-GIEDFPKLNQLYAFSQTIGG 195 (197)
T ss_dssp TBCCCCG-----GGGGCSSCCEEECTTB-CCCCCT-TGGGCSSCCEEEECBC----
T ss_pred CCccccH-----hhcCCCCCCEEECCCC-CCcChH-HhccCCCCCEEEeeCcccCC
Confidence 7688886 4678999999999986 477787 78899999999999999754
No 97
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.24 E-value=1.5e-11 Score=129.93 Aligned_cols=204 Identities=22% Similarity=0.209 Sum_probs=111.0
Q ss_pred CcceEEEEEeeccCCC-Ccccc--CCCCceeEEEeCCCCCCCCCCCCccccccccCc-----ccceeeecccc-CCccCe
Q 047321 466 GDKVRHLGLKFEEGAS-FPMSI--HGLNRLRTLLIYDQSPYNPSLSSSILPELFNKL-----ACLRALVIRQS-LRTLEK 536 (807)
Q Consensus 466 ~~~~r~L~l~~~~~~~-~~~~~--~~l~~Lr~L~l~~~~~~~l~~~i~~LP~~i~~L-----~~L~~LdL~~~-L~~L~~ 536 (807)
..++++|++++|.+.. .|..+ ..+++|++|++++| .+..+|..++.+ ++|++|+|+.+ +..
T Consensus 94 l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N-------~l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~--- 163 (312)
T 1wwl_A 94 ISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNV-------SWATRDAWLAELQQWLKPGLKVLSIAQAHSLN--- 163 (312)
T ss_dssp TSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESC-------BCSSSSSHHHHHHTTCCTTCCEEEEESCSCCC---
T ss_pred cCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCC-------CCcchhHHHHHHHHhhcCCCcEEEeeCCCCcc---
Confidence 3567777777777763 56554 67777777777776 566667666666 66777766511 000
Q ss_pred eEecCccCCCccccccccccccccCcccccCCCCCCChhHHHHhhccCCCCCCeEEEEeeccCCCcchhhhhchhhHHHH
Q 047321 537 FVVGGGVDGSNTCRLESLKNLQLLRECGIEGLGNVSHLDEAERLQLYNQQNLLRLRLRFGRVVDGEDEERRRKNEKDKQL 616 (807)
Q Consensus 537 l~~~~~~~~~~~~~i~~L~~L~~L~~L~i~~l~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~ 616 (807)
.... .+.++++|+.|++++|.+. + ....
T Consensus 164 ------------~~~~----------------------------~~~~l~~L~~L~Ls~N~l~----~--------~~~~ 191 (312)
T 1wwl_A 164 ------------FSCE----------------------------QVRVFPALSTLDLSDNPEL----G--------ERGL 191 (312)
T ss_dssp ------------CCTT----------------------------TCCCCSSCCEEECCSCTTC----H--------HHHH
T ss_pred ------------chHH----------------------------HhccCCCCCEEECCCCCcC----c--------chHH
Confidence 0011 2445556666666655420 0 0000
Q ss_pred HHhhcCCCCCCCCCCCcc-cceEeccCCcCceeeCcccCCCCCCCCCCCCCCCCCCccccCcccccccccCCCccccchh
Q 047321 617 LEALQPPLSHLPPLGKLP-LKKLELRDLESVKRVGNEFLGIEESSEDDPSSSSSSPSVIAFPKLKSLEIDGMKELEEWNY 695 (807)
Q Consensus 617 l~~l~p~~~~lp~l~~L~-L~~L~L~~~~~l~~i~~~~~~~~~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~ 695 (807)
...+ .++.++ |++|+++++. ++.++...... ...+++|+.|+++++ .+...+.
T Consensus 192 ~~~~--------~~~~l~~L~~L~L~~N~-l~~~~~~~~~~----------------~~~l~~L~~L~Ls~N-~l~~~~~ 245 (312)
T 1wwl_A 192 ISAL--------CPLKFPTLQVLALRNAG-METPSGVCSAL----------------AAARVQLQGLDLSHN-SLRDAAG 245 (312)
T ss_dssp HHHS--------CTTSCTTCCEEECTTSC-CCCHHHHHHHH----------------HHTTCCCSEEECTTS-CCCSSCC
T ss_pred HHHH--------HhccCCCCCEEECCCCc-CcchHHHHHHH----------------HhcCCCCCEEECCCC-cCCcccc
Confidence 0010 014455 6666666543 33221100000 124567777777664 3433221
Q ss_pred hhccccCCCCCCcccEEEEccCCCCCCCcccccCCCCccEEeeccCcccccccccccccCCCCCCCCeeeeccCC
Q 047321 696 RITRKENISIMPRLSSLQIMNCRKLKALPDYLLQTIALQKLSIYSCDLLEELPILEDRRTTDIPRLSSLAIWYCP 770 (807)
Q Consensus 696 ~~~~~~~~~~l~~L~~L~l~~c~~L~~lp~~l~~l~~L~~L~l~~c~~l~~lP~~~~~~~~~l~~L~~L~i~~c~ 770 (807)
......+++|+.|++++| +++.+|..+. ++|++|+++++ .+..+| . +..+++|+.|++++++
T Consensus 246 ----~~~~~~l~~L~~L~Ls~N-~l~~ip~~~~--~~L~~L~Ls~N-~l~~~p----~-~~~l~~L~~L~L~~N~ 307 (312)
T 1wwl_A 246 ----APSCDWPSQLNSLNLSFT-GLKQVPKGLP--AKLSVLDLSYN-RLDRNP----S-PDELPQVGNLSLKGNP 307 (312)
T ss_dssp ----CSCCCCCTTCCEEECTTS-CCSSCCSSCC--SEEEEEECCSS-CCCSCC----C-TTTSCEEEEEECTTCT
T ss_pred ----hhhhhhcCCCCEEECCCC-ccChhhhhcc--CCceEEECCCC-CCCCCh----h-HhhCCCCCEEeccCCC
Confidence 122334677777777777 5667776655 67777777774 566666 3 5667777777777643
No 98
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.24 E-value=1.7e-11 Score=131.85 Aligned_cols=215 Identities=17% Similarity=0.227 Sum_probs=142.4
Q ss_pred CcceEEEEEeeccCCCCcc-ccCCCCceeEEEeCCCCCCCCCCCC-ccccc-cccCcccceeee-cc-ccCCccCeeEec
Q 047321 466 GDKVRHLGLKFEEGASFPM-SIHGLNRLRTLLIYDQSPYNPSLSS-SILPE-LFNKLACLRALV-IR-QSLRTLEKFVVG 540 (807)
Q Consensus 466 ~~~~r~L~l~~~~~~~~~~-~~~~l~~Lr~L~l~~~~~~~l~~~i-~~LP~-~i~~L~~L~~Ld-L~-~~L~~L~~l~~~ 540 (807)
+..+++|++++|.++.+|. .|.++++|++|++++| .+ +.+|. .+.+|++|+.+. ++ .++..+.
T Consensus 29 ~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N-------~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~----- 96 (350)
T 4ay9_X 29 PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQN-------DVLEVIEADVFSNLPKLHEIRIEKANNLLYIN----- 96 (350)
T ss_dssp CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECC-------TTCCEECTTSBCSCTTCCEEEEEEETTCCEEC-----
T ss_pred CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCC-------CCCCccChhHhhcchhhhhhhcccCCcccccC-----
Confidence 5789999999999998775 6899999999999998 54 55664 568888876543 33 2233221
Q ss_pred CccCCCccccccccccccccCcccccC--CCCCCChhHHHHhhccCCCCCCeEEEEeec-cCCCcchhhhhchhhHHHHH
Q 047321 541 GGVDGSNTCRLESLKNLQLLRECGIEG--LGNVSHLDEAERLQLYNQQNLLRLRLRFGR-VVDGEDEERRRKNEKDKQLL 617 (807)
Q Consensus 541 ~~~~~~~~~~i~~L~~L~~L~~L~i~~--l~~~~~~~~~~~~~l~~l~~L~~L~L~~~~-~~~~~~~~~~~~~~~~~~~l 617 (807)
...+..|.+|+.|.+.+ +..+... ......++..|++..+. +
T Consensus 97 ----------~~~f~~l~~L~~L~l~~n~l~~~~~~------~~~~~~~l~~l~l~~~~~i------------------- 141 (350)
T 4ay9_X 97 ----------PEAFQNLPNLQYLLISNTGIKHLPDV------HKIHSLQKVLLDIQDNINI------------------- 141 (350)
T ss_dssp ----------TTSBCCCTTCCEEEEEEECCSSCCCC------TTCCBSSCEEEEEESCTTC-------------------
T ss_pred ----------chhhhhccccccccccccccccCCch------hhcccchhhhhhhcccccc-------------------
Confidence 12234455555555433 3222221 22334456666665432 1
Q ss_pred HhhcCCCCCCCC--CCCcc--cceEeccCCcCceeeCcccCCCCCCCCCCCCCCCCCCccccCcccccccccCCCccccc
Q 047321 618 EALQPPLSHLPP--LGKLP--LKKLELRDLESVKRVGNEFLGIEESSEDDPSSSSSSPSVIAFPKLKSLEIDGMKELEEW 693 (807)
Q Consensus 618 ~~l~p~~~~lp~--l~~L~--L~~L~L~~~~~l~~i~~~~~~~~~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~ 693 (807)
..+|. +..++ ++.|++++ +.++.++... ....+|+.|.+.+++.++.+
T Consensus 142 -------~~l~~~~f~~~~~~l~~L~L~~-N~i~~i~~~~--------------------f~~~~L~~l~l~~~n~l~~i 193 (350)
T 4ay9_X 142 -------HTIERNSFVGLSFESVILWLNK-NGIQEIHNSA--------------------FNGTQLDELNLSDNNNLEEL 193 (350)
T ss_dssp -------CEECTTSSTTSBSSCEEEECCS-SCCCEECTTS--------------------STTEEEEEEECTTCTTCCCC
T ss_pred -------ccccccchhhcchhhhhhcccc-ccccCCChhh--------------------ccccchhHHhhccCCcccCC
Confidence 22222 33443 88888886 4577776542 24567888888877778777
Q ss_pred hhhhccccCCCCCCcccEEEEccCCCCCCCcccccCCCCccEEeeccCcccccccccccccCCCCCCCCeeeecc
Q 047321 694 NYRITRKENISIMPRLSSLQIMNCRKLKALPDYLLQTIALQKLSIYSCDLLEELPILEDRRTTDIPRLSSLAIWY 768 (807)
Q Consensus 694 ~~~~~~~~~~~~l~~L~~L~l~~c~~L~~lp~~l~~l~~L~~L~l~~c~~l~~lP~~~~~~~~~l~~L~~L~i~~ 768 (807)
+. ..+..+++|+.|+++++ +++.+|.+ .+.+|+.|.+.+|++++.+| .+..+++|+.+++.+
T Consensus 194 ~~-----~~f~~l~~L~~LdLs~N-~l~~lp~~--~~~~L~~L~~l~~~~l~~lP-----~l~~l~~L~~l~l~~ 255 (350)
T 4ay9_X 194 PN-----DVFHGASGPVILDISRT-RIHSLPSY--GLENLKKLRARSTYNLKKLP-----TLEKLVALMEASLTY 255 (350)
T ss_dssp CT-----TTTTTEECCSEEECTTS-CCCCCCSS--SCTTCCEEECTTCTTCCCCC-----CTTTCCSCCEEECSC
T ss_pred CH-----HHhccCcccchhhcCCC-CcCccChh--hhccchHhhhccCCCcCcCC-----CchhCcChhhCcCCC
Confidence 74 34567888888888888 78888864 36788888888888888887 356788888888753
No 99
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.23 E-value=2.8e-11 Score=138.92 Aligned_cols=108 Identities=20% Similarity=0.311 Sum_probs=73.8
Q ss_pred ccCCCCCCeEEEEeeccCCCcchhhhhchhhHHHHHHhhcCCCCCCCCCCCcc-cceEeccCCcCceeeCcccCCCCCCC
Q 047321 582 LYNQQNLLRLRLRFGRVVDGEDEERRRKNEKDKQLLEALQPPLSHLPPLGKLP-LKKLELRDLESVKRVGNEFLGIEESS 660 (807)
Q Consensus 582 l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~l~p~~~~lp~l~~L~-L~~L~L~~~~~l~~i~~~~~~~~~l~ 660 (807)
+..+++|+.|+|+.|.+ ..+|.++.++ |+.|+|++|. +..++
T Consensus 105 l~~l~~L~~L~Ls~N~l--------------------------~~l~~l~~l~~L~~L~Ls~N~-l~~l~---------- 147 (605)
T 1m9s_A 105 LKDLKKLKSLSLEHNGI--------------------------SDINGLVHLPQLESLYLGNNK-ITDIT---------- 147 (605)
T ss_dssp STTCTTCCEEECTTSCC--------------------------CCCGGGGGCTTCSEEECCSSC-CCCCG----------
T ss_pred hccCCCCCEEEecCCCC--------------------------CCCccccCCCccCEEECCCCc-cCCch----------
Confidence 55667788888877764 3455567778 8888887753 33331
Q ss_pred CCCCCCCCCCCccccCcccccccccCCCccccchhhhccccCCCCCCcccEEEEccCCCCCCCcccccCCCCccEEeecc
Q 047321 661 EDDPSSSSSSPSVIAFPKLKSLEIDGMKELEEWNYRITRKENISIMPRLSSLQIMNCRKLKALPDYLLQTIALQKLSIYS 740 (807)
Q Consensus 661 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~lp~~l~~l~~L~~L~l~~ 740 (807)
.+..+++|+.|+|++| .+...+. +..+++|+.|+|++| .+..+| .+..+++|+.|+|++
T Consensus 148 -----------~l~~l~~L~~L~Ls~N-~l~~~~~-------l~~l~~L~~L~Ls~N-~i~~l~-~l~~l~~L~~L~L~~ 206 (605)
T 1m9s_A 148 -----------VLSRLTKLDTLSLEDN-QISDIVP-------LAGLTKLQNLYLSKN-HISDLR-ALAGLKNLDVLELFS 206 (605)
T ss_dssp -----------GGGSCTTCSEEECCSS-CCCCCGG-------GTTCTTCCEEECCSS-CCCBCG-GGTTCTTCSEEECCS
T ss_pred -----------hhcccCCCCEEECcCC-cCCCchh-------hccCCCCCEEECcCC-CCCCCh-HHccCCCCCEEEccC
Confidence 1447788888888875 4544432 456788888888888 677776 577788888888888
Q ss_pred Cccccccc
Q 047321 741 CDLLEELP 748 (807)
Q Consensus 741 c~~l~~lP 748 (807)
|+ +...|
T Consensus 207 N~-l~~~p 213 (605)
T 1m9s_A 207 QE-CLNKP 213 (605)
T ss_dssp EE-EECCC
T ss_pred Cc-CcCCc
Confidence 64 44444
No 100
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.23 E-value=5.1e-11 Score=139.11 Aligned_cols=129 Identities=13% Similarity=0.094 Sum_probs=86.0
Q ss_pred CCCcc-cceEeccCCcCceee-CcccCCCCCCCCCCCCC---C--CCCCccccCcccccccccCCCccccchhhhccccC
Q 047321 630 LGKLP-LKKLELRDLESVKRV-GNEFLGIEESSEDDPSS---S--SSSPSVIAFPKLKSLEIDGMKELEEWNYRITRKEN 702 (807)
Q Consensus 630 l~~L~-L~~L~L~~~~~l~~i-~~~~~~~~~l~~~~~~~---~--~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~ 702 (807)
+..++ ++.++++.+. +..+ +..+.....+..++... . ..|..+..+++|+.|+|+++ .+..++. ..
T Consensus 441 ~~~l~~l~~l~ls~n~-l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N-~L~~l~~-----~~ 513 (635)
T 4g8a_A 441 FLSLRNLIYLDISHTH-TRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQC-QLEQLSP-----TA 513 (635)
T ss_dssp TTTCTTCCEEECTTSC-CEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTS-CCCEECT-----TT
T ss_pred cccccccccccccccc-cccccccccccchhhhhhhhhhcccccccCchhhhhccccCEEECCCC-ccCCcCh-----HH
Confidence 44556 6777776543 3333 22233333333222221 1 12344668899999999996 6777653 45
Q ss_pred CCCCCcccEEEEccCCCCCCCcc-cccCCCCccEEeeccCcccccccccccccCCCC-CCCCeeeeccCC
Q 047321 703 ISIMPRLSSLQIMNCRKLKALPD-YLLQTIALQKLSIYSCDLLEELPILEDRRTTDI-PRLSSLAIWYCP 770 (807)
Q Consensus 703 ~~~l~~L~~L~l~~c~~L~~lp~-~l~~l~~L~~L~l~~c~~l~~lP~~~~~~~~~l-~~L~~L~i~~c~ 770 (807)
+..+++|+.|++++| ++..+|. .+..+++|+.|+|+++. +..+| ...+..+ ++|+.|+++++|
T Consensus 514 f~~l~~L~~L~Ls~N-~l~~l~~~~~~~l~~L~~L~Ls~N~-l~~~~---~~~l~~l~~~L~~L~L~~Np 578 (635)
T 4g8a_A 514 FNSLSSLQVLNMSHN-NFFSLDTFPYKCLNSLQVLDYSLNH-IMTSK---KQELQHFPSSLAFLNLTQND 578 (635)
T ss_dssp TTTCTTCCEEECTTS-CCCBCCCGGGTTCTTCCEEECTTSC-CCBCC---SSCTTCCCTTCCEEECTTCC
T ss_pred HcCCCCCCEEECCCC-cCCCCChhHHhCCCCCCEEECCCCc-CCCCC---HHHHHhhhCcCCEEEeeCCC
Confidence 678999999999999 7888854 57889999999999964 55553 1556676 689999998654
No 101
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.22 E-value=2.6e-11 Score=139.17 Aligned_cols=177 Identities=18% Similarity=0.269 Sum_probs=113.7
Q ss_pred CCccccccccCcccceeeeccccCCccCeeEecCccCCCccccccccccccccCcccccCCCCCCChhHHHHhhccCCCC
Q 047321 508 SSSILPELFNKLACLRALVIRQSLRTLEKFVVGGGVDGSNTCRLESLKNLQLLRECGIEGLGNVSHLDEAERLQLYNQQN 587 (807)
Q Consensus 508 ~i~~LP~~i~~L~~L~~LdL~~~L~~L~~l~~~~~~~~~~~~~i~~L~~L~~L~~L~i~~l~~~~~~~~~~~~~l~~l~~ 587 (807)
.+..++. +..|.+|++|+++. +. ...+..+..|.+|+.|.+++.. +.... .+.++++
T Consensus 32 ~i~~~~~-~~~L~~L~~L~l~~------------n~----i~~l~~l~~l~~L~~L~Ls~N~-l~~~~-----~l~~l~~ 88 (605)
T 1m9s_A 32 SVTDAVT-QNELNSIDQIIANN------------SD----IKSVQGIQYLPNVTKLFLNGNK-LTDIK-----PLTNLKN 88 (605)
T ss_dssp CTTSEEC-HHHHTTCCCCBCTT------------CC----CCCCTTGGGCTTCCEEECTTSC-CCCCG-----GGGGCTT
T ss_pred Ccccccc-hhcCCCCCEEECcC------------CC----CCCChHHccCCCCCEEEeeCCC-CCCCh-----hhccCCC
Confidence 3444432 56666777766651 11 1123356667777776666521 22221 1677788
Q ss_pred CCeEEEEeeccCCCcchhhhhchhhHHHHHHhhcCCCCCCCCCCCcc-cceEeccCCcCceeeCcccCCCCCCCCCCCCC
Q 047321 588 LLRLRLRFGRVVDGEDEERRRKNEKDKQLLEALQPPLSHLPPLGKLP-LKKLELRDLESVKRVGNEFLGIEESSEDDPSS 666 (807)
Q Consensus 588 L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~l~p~~~~lp~l~~L~-L~~L~L~~~~~l~~i~~~~~~~~~l~~~~~~~ 666 (807)
|+.|+|+.|.+ ..+|.++.++ |+.|+|+++. +..++
T Consensus 89 L~~L~Ls~N~l--------------------------~~l~~l~~l~~L~~L~Ls~N~-l~~l~---------------- 125 (605)
T 1m9s_A 89 LGWLFLDENKI--------------------------KDLSSLKDLKKLKSLSLEHNG-ISDIN---------------- 125 (605)
T ss_dssp CCEEECCSSCC--------------------------CCCTTSTTCTTCCEEECTTSC-CCCCG----------------
T ss_pred CCEEECcCCCC--------------------------CCChhhccCCCCCEEEecCCC-CCCCc----------------
Confidence 88888887764 3456677788 8888887754 33332
Q ss_pred CCCCCccccCcccccccccCCCccccchhhhccccCCCCCCcccEEEEccCCCCCCCcccccCCCCccEEeeccCccccc
Q 047321 667 SSSSPSVIAFPKLKSLEIDGMKELEEWNYRITRKENISIMPRLSSLQIMNCRKLKALPDYLLQTIALQKLSIYSCDLLEE 746 (807)
Q Consensus 667 ~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~lp~~l~~l~~L~~L~l~~c~~l~~ 746 (807)
.+..+++|+.|+|+++ .+..++ .+..+++|+.|+|++| .+..++. +..+++|+.|+|++| .+..
T Consensus 126 -----~l~~l~~L~~L~Ls~N-~l~~l~-------~l~~l~~L~~L~Ls~N-~l~~~~~-l~~l~~L~~L~Ls~N-~i~~ 189 (605)
T 1m9s_A 126 -----GLVHLPQLESLYLGNN-KITDIT-------VLSRLTKLDTLSLEDN-QISDIVP-LAGLTKLQNLYLSKN-HISD 189 (605)
T ss_dssp -----GGGGCTTCSEEECCSS-CCCCCG-------GGGSCTTCSEEECCSS-CCCCCGG-GTTCTTCCEEECCSS-CCCB
T ss_pred -----cccCCCccCEEECCCC-ccCCch-------hhcccCCCCEEECcCC-cCCCchh-hccCCCCCEEECcCC-CCCC
Confidence 1347788888888875 455443 2456788888888888 6777765 777888888888886 5666
Q ss_pred ccccccccCCCCCCCCeeeeccCCC
Q 047321 747 LPILEDRRTTDIPRLSSLAIWYCPK 771 (807)
Q Consensus 747 lP~~~~~~~~~l~~L~~L~i~~c~~ 771 (807)
+| .+..+++|+.|++++|+.
T Consensus 190 l~-----~l~~l~~L~~L~L~~N~l 209 (605)
T 1m9s_A 190 LR-----ALAGLKNLDVLELFSQEC 209 (605)
T ss_dssp CG-----GGTTCTTCSEEECCSEEE
T ss_pred Ch-----HHccCCCCCEEEccCCcC
Confidence 65 356788888888887653
No 102
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.21 E-value=2.1e-11 Score=127.31 Aligned_cols=79 Identities=18% Similarity=0.311 Sum_probs=37.8
Q ss_pred cCcccccccccCCCccccchhhhccccCCCCCCcccEEEEccCCCCCCCcccccCCCCccEEeeccCccccccccccccc
Q 047321 675 AFPKLKSLEIDGMKELEEWNYRITRKENISIMPRLSSLQIMNCRKLKALPDYLLQTIALQKLSIYSCDLLEELPILEDRR 754 (807)
Q Consensus 675 ~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~lp~~l~~l~~L~~L~l~~c~~l~~lP~~~~~~ 754 (807)
.+++|+.|+++++ .+..++ .+..+++|+.|++++| .+..++. +..+++|+.|++++| .+..+| .
T Consensus 132 ~l~~L~~L~l~~n-~l~~~~-------~l~~l~~L~~L~L~~N-~l~~~~~-l~~l~~L~~L~L~~N-~i~~l~-----~ 195 (291)
T 1h6t_A 132 HLPQLESLYLGNN-KITDIT-------VLSRLTKLDTLSLEDN-QISDIVP-LAGLTKLQNLYLSKN-HISDLR-----A 195 (291)
T ss_dssp GCTTCCEEECCSS-CCCCCG-------GGGGCTTCSEEECCSS-CCCCCGG-GTTCTTCCEEECCSS-CCCBCG-----G
T ss_pred CCCCCCEEEccCC-cCCcch-------hhccCCCCCEEEccCC-ccccchh-hcCCCccCEEECCCC-cCCCCh-----h
Confidence 4555555555543 333322 1234555555555555 4444443 445555555555553 344443 2
Q ss_pred CCCCCCCCeeeeccC
Q 047321 755 TTDIPRLSSLAIWYC 769 (807)
Q Consensus 755 ~~~l~~L~~L~i~~c 769 (807)
+..+++|+.|++++|
T Consensus 196 l~~l~~L~~L~l~~n 210 (291)
T 1h6t_A 196 LAGLKNLDVLELFSQ 210 (291)
T ss_dssp GTTCTTCSEEEEEEE
T ss_pred hccCCCCCEEECcCC
Confidence 344555555555543
No 103
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.20 E-value=6.7e-11 Score=134.29 Aligned_cols=186 Identities=17% Similarity=0.182 Sum_probs=116.6
Q ss_pred ceEEEEEeeccCCCCccccCCCCceeEEEeCCCCCCCCCCCCccccccccCcccceeeeccccCCccCeeEecCccCCCc
Q 047321 468 KVRHLGLKFEEGASFPMSIHGLNRLRTLLIYDQSPYNPSLSSSILPELFNKLACLRALVIRQSLRTLEKFVVGGGVDGSN 547 (807)
Q Consensus 468 ~~r~L~l~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~l~~~i~~LP~~i~~L~~L~~LdL~~~L~~L~~l~~~~~~~~~~ 547 (807)
+++.|++++|.+..+|..+. ++|++|++++| .+..+| +.+++|++|+|+.|
T Consensus 60 ~L~~L~Ls~n~L~~lp~~l~--~~L~~L~Ls~N-------~l~~ip---~~l~~L~~L~Ls~N----------------- 110 (571)
T 3cvr_A 60 QFSELQLNRLNLSSLPDNLP--PQITVLEITQN-------ALISLP---ELPASLEYLDACDN----------------- 110 (571)
T ss_dssp TCSEEECCSSCCSCCCSCCC--TTCSEEECCSS-------CCSCCC---CCCTTCCEEECCSS-----------------
T ss_pred CccEEEeCCCCCCccCHhHc--CCCCEEECcCC-------CCcccc---cccCCCCEEEccCC-----------------
Confidence 67788888887777776553 67888888887 667777 45677777777511
Q ss_pred cccccccccccccCcccccCCCCCCChhHHHHhhccCCCCCCeEEEEeeccCCCcchhhhhchhhHHHHHHhhcCCCCCC
Q 047321 548 TCRLESLKNLQLLRECGIEGLGNVSHLDEAERLQLYNQQNLLRLRLRFGRVVDGEDEERRRKNEKDKQLLEALQPPLSHL 627 (807)
Q Consensus 548 ~~~i~~L~~L~~L~~L~i~~l~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~l~p~~~~l 627 (807)
.+..+.. +.+ +|+.|+|+.|.+ ..+
T Consensus 111 --~l~~ip~-------------------------l~~--~L~~L~Ls~N~l--------------------------~~l 135 (571)
T 3cvr_A 111 --RLSTLPE-------------------------LPA--SLKHLDVDNNQL--------------------------TML 135 (571)
T ss_dssp --CCSCCCC-------------------------CCT--TCCEEECCSSCC--------------------------SCC
T ss_pred --CCCCcch-------------------------hhc--CCCEEECCCCcC--------------------------CCC
Confidence 1111100 111 677777777764 345
Q ss_pred CCCCCcc-cceEeccCCcCceeeCcccCCCCCCCCCCCCCCCCCCccccCcccccccccCCCccccchhhhccccCCCCC
Q 047321 628 PPLGKLP-LKKLELRDLESVKRVGNEFLGIEESSEDDPSSSSSSPSVIAFPKLKSLEIDGMKELEEWNYRITRKENISIM 706 (807)
Q Consensus 628 p~l~~L~-L~~L~L~~~~~l~~i~~~~~~~~~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~l 706 (807)
|. .++ |+.|+|+++. ++.++. .+++|+.|+++++ .+..++. +.
T Consensus 136 p~--~l~~L~~L~Ls~N~-l~~lp~-----------------------~l~~L~~L~Ls~N-~L~~lp~-------l~-- 179 (571)
T 3cvr_A 136 PE--LPALLEYINADNNQ-LTMLPE-----------------------LPTSLEVLSVRNN-QLTFLPE-------LP-- 179 (571)
T ss_dssp CC--CCTTCCEEECCSSC-CSCCCC-----------------------CCTTCCEEECCSS-CCSCCCC-------CC--
T ss_pred CC--cCccccEEeCCCCc-cCcCCC-----------------------cCCCcCEEECCCC-CCCCcch-------hh--
Confidence 55 466 8888887643 433331 3567888888775 4555432 22
Q ss_pred CcccEEEEccCCCCCCCcccccCCCCc-------cEEeeccCcccccccccccccCCCCCCCCeeeeccCCCcccCCccC
Q 047321 707 PRLSSLQIMNCRKLKALPDYLLQTIAL-------QKLSIYSCDLLEELPILEDRRTTDIPRLSSLAIWYCPKLKVLPDYL 779 (807)
Q Consensus 707 ~~L~~L~l~~c~~L~~lp~~l~~l~~L-------~~L~l~~c~~l~~lP~~~~~~~~~l~~L~~L~i~~c~~l~~lP~~l 779 (807)
++|+.|++++| +++.+|. +.. +| +.|++++| .+..+| ..+..+++|+.|++++|+..+.+|..+
T Consensus 180 ~~L~~L~Ls~N-~L~~lp~-~~~--~L~~~~~~L~~L~Ls~N-~l~~lp----~~l~~l~~L~~L~L~~N~l~~~~p~~l 250 (571)
T 3cvr_A 180 ESLEALDVSTN-LLESLPA-VPV--RNHHSEETEIFFRCREN-RITHIP----ENILSLDPTCTIILEDNPLSSRIRESL 250 (571)
T ss_dssp TTCCEEECCSS-CCSSCCC-CC----------CCEEEECCSS-CCCCCC----GGGGGSCTTEEEECCSSSCCHHHHHHH
T ss_pred CCCCEEECcCC-CCCchhh-HHH--hhhcccccceEEecCCC-cceecC----HHHhcCCCCCEEEeeCCcCCCcCHHHH
Confidence 77888888777 6777776 443 66 77777774 566777 556667777777777766555566555
Q ss_pred CCC
Q 047321 780 LRT 782 (807)
Q Consensus 780 ~~l 782 (807)
.++
T Consensus 251 ~~l 253 (571)
T 3cvr_A 251 SQQ 253 (571)
T ss_dssp HHH
T ss_pred HHh
Confidence 443
No 104
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=99.20 E-value=5.3e-10 Score=111.54 Aligned_cols=185 Identities=12% Similarity=-0.045 Sum_probs=118.4
Q ss_pred CccccccchHHHHHHHHhCCCCCCCCCceEEEEEccCCChHHHHHHHHHcCcccccccc-eEEEEEeCCCCCHHHHHHHH
Q 047321 104 GGVCGRVDEKNELLSKLLCGSSEQQKGLDVISLVGLGGIGKTTLAQLAYNNDEVKRNFE-KVIWVCVSNTFEEISVAKAI 182 (807)
Q Consensus 104 ~~~vGR~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~-~~~wv~~~~~~~~~~~~~~i 182 (807)
.+++||++.++.+.+++... ..+.+.|+|++|+|||++|+.+++... ...+. ..+.+..+.......+...+
T Consensus 17 ~~~~g~~~~~~~l~~~l~~~------~~~~~ll~G~~G~GKT~l~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (226)
T 2chg_A 17 DEVVGQDEVIQRLKGYVERK------NIPHLLFSGPPGTGKTATAIALARDLF-GENWRDNFIEMNASDERGIDVVRHKI 89 (226)
T ss_dssp GGCCSCHHHHHHHHHHHHTT------CCCCEEEECSTTSSHHHHHHHHHHHHH-GGGGGGGEEEEETTCTTCHHHHHHHH
T ss_pred HHHcCcHHHHHHHHHHHhCC------CCCeEEEECCCCCCHHHHHHHHHHHHh-ccccccceEEeccccccChHHHHHHH
Confidence 46999999999999999743 233489999999999999999987321 11121 23344443333332222111
Q ss_pred HHHcCCCCCCCccHHHHHHHHHHHHhCCceEEEEeCCCCCCccChHHHHHhhcCCCCCcEEEEEcCCHHH-HH-HhCCCc
Q 047321 183 IEGLGVSAFGLSEFESLMKQIQEYITGKKIFLVLDDVWDGDYKKWDPFFSCLKNGHHESKILITTHDRSV-AL-QLGSID 260 (807)
Q Consensus 183 ~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~IliTTR~~~v-~~-~~~~~~ 260 (807)
........ ...+++.+||+||++.-.....+.+...+.....+.++|+||+.... .. ......
T Consensus 90 ~~~~~~~~---------------~~~~~~~vliiDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~l~~r~~ 154 (226)
T 2chg_A 90 KEFARTAP---------------IGGAPFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVSRIIEPIQSRCA 154 (226)
T ss_dssp HHHHTSCC---------------STTCSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHTTSE
T ss_pred HHHhcccC---------------CCccCceEEEEeChhhcCHHHHHHHHHHHHhcCCCCeEEEEeCChhhcCHHHHHhCc
Confidence 11110000 00257889999999765555566677777666677888988876531 11 112234
Q ss_pred eEeCCCCChhhHHHHHHHHHhccCCccCccchHHHHHHHHHHcCCCHHHHHHHH
Q 047321 261 IIPVKELGEGECWLLFKQIAFLRRSFEDCEKLEPIGRKIASKCKGLPLAAKVIG 314 (807)
Q Consensus 261 ~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~~~~I~~~c~glPLai~~~~ 314 (807)
.+++.+++.++..+++.+.+...+.. --.+....|++.++|.|..+..+.
T Consensus 155 ~i~~~~~~~~~~~~~l~~~~~~~~~~----~~~~~~~~l~~~~~g~~r~l~~~l 204 (226)
T 2chg_A 155 VFRFKPVPKEAMKKRLLEICEKEGVK----ITEDGLEALIYISGGDFRKAINAL 204 (226)
T ss_dssp EEECCCCCHHHHHHHHHHHHHHHTCC----BCHHHHHHHHHHHTTCHHHHHHHH
T ss_pred eeecCCCCHHHHHHHHHHHHHHcCCC----CCHHHHHHHHHHcCCCHHHHHHHH
Confidence 88999999999999999877543321 123567889999999999655443
No 105
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.19 E-value=4.6e-11 Score=124.80 Aligned_cols=171 Identities=18% Similarity=0.260 Sum_probs=120.8
Q ss_pred CcceEEEEEeeccCCCCccccCCCCceeEEEeCCCCCCCCCCCCccccccccCcccceeeeccccCCccCeeEecCccCC
Q 047321 466 GDKVRHLGLKFEEGASFPMSIHGLNRLRTLLIYDQSPYNPSLSSSILPELFNKLACLRALVIRQSLRTLEKFVVGGGVDG 545 (807)
Q Consensus 466 ~~~~r~L~l~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~l~~~i~~LP~~i~~L~~L~~LdL~~~L~~L~~l~~~~~~~~ 545 (807)
...+++|+++++.+..++ .+..+++|++|++++| .+..+|. ++++++|++|+++.+
T Consensus 45 l~~L~~L~l~~~~i~~~~-~~~~l~~L~~L~L~~n-------~l~~~~~-l~~l~~L~~L~l~~n--------------- 100 (291)
T 1h6t_A 45 LNSIDQIIANNSDIKSVQ-GIQYLPNVTKLFLNGN-------KLTDIKP-LANLKNLGWLFLDEN--------------- 100 (291)
T ss_dssp HHTCCEEECTTSCCCCCT-TGGGCTTCCEEECCSS-------CCCCCGG-GTTCTTCCEEECCSS---------------
T ss_pred cCcccEEEccCCCcccCh-hHhcCCCCCEEEccCC-------ccCCCcc-cccCCCCCEEECCCC---------------
Confidence 345677777776666553 3666777777777776 5666665 666777777766511
Q ss_pred CccccccccccccccCcccccCCCCCCChhHHHHhhccCCCCCCeEEEEeeccCCCcchhhhhchhhHHHHHHhhcCCCC
Q 047321 546 SNTCRLESLKNLQLLRECGIEGLGNVSHLDEAERLQLYNQQNLLRLRLRFGRVVDGEDEERRRKNEKDKQLLEALQPPLS 625 (807)
Q Consensus 546 ~~~~~i~~L~~L~~L~~L~i~~l~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~l~p~~~ 625 (807)
.+.. . ..+.++++|+.|++++|.+ .
T Consensus 101 ----~l~~--------------------~-----~~l~~l~~L~~L~L~~n~i--------------------------~ 125 (291)
T 1h6t_A 101 ----KVKD--------------------L-----SSLKDLKKLKSLSLEHNGI--------------------------S 125 (291)
T ss_dssp ----CCCC--------------------G-----GGGTTCTTCCEEECTTSCC--------------------------C
T ss_pred ----cCCC--------------------C-----hhhccCCCCCEEECCCCcC--------------------------C
Confidence 1111 0 0256678899999988875 3
Q ss_pred CCCCCCCcc-cceEeccCCcCceeeCcccCCCCCCCCCCCCCCCCCCccccCcccccccccCCCccccchhhhccccCCC
Q 047321 626 HLPPLGKLP-LKKLELRDLESVKRVGNEFLGIEESSEDDPSSSSSSPSVIAFPKLKSLEIDGMKELEEWNYRITRKENIS 704 (807)
Q Consensus 626 ~lp~l~~L~-L~~L~L~~~~~l~~i~~~~~~~~~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~ 704 (807)
.++.++.++ |+.|+++++. ++.++ .+..+++|+.|+++++ .+..++. +.
T Consensus 126 ~~~~l~~l~~L~~L~l~~n~-l~~~~---------------------~l~~l~~L~~L~L~~N-~l~~~~~-------l~ 175 (291)
T 1h6t_A 126 DINGLVHLPQLESLYLGNNK-ITDIT---------------------VLSRLTKLDTLSLEDN-QISDIVP-------LA 175 (291)
T ss_dssp CCGGGGGCTTCCEEECCSSC-CCCCG---------------------GGGGCTTCSEEECCSS-CCCCCGG-------GT
T ss_pred CChhhcCCCCCCEEEccCCc-CCcch---------------------hhccCCCCCEEEccCC-ccccchh-------hc
Confidence 455677889 9999999854 44432 1458899999999986 5665542 56
Q ss_pred CCCcccEEEEccCCCCCCCcccccCCCCccEEeeccCccccccc
Q 047321 705 IMPRLSSLQIMNCRKLKALPDYLLQTIALQKLSIYSCDLLEELP 748 (807)
Q Consensus 705 ~l~~L~~L~l~~c~~L~~lp~~l~~l~~L~~L~l~~c~~l~~lP 748 (807)
.+++|+.|++++| .++.+|. +..+++|+.|++++|+ +...|
T Consensus 176 ~l~~L~~L~L~~N-~i~~l~~-l~~l~~L~~L~l~~n~-i~~~~ 216 (291)
T 1h6t_A 176 GLTKLQNLYLSKN-HISDLRA-LAGLKNLDVLELFSQE-CLNKP 216 (291)
T ss_dssp TCTTCCEEECCSS-CCCBCGG-GTTCTTCSEEEEEEEE-EECCC
T ss_pred CCCccCEEECCCC-cCCCChh-hccCCCCCEEECcCCc-ccCCc
Confidence 7999999999999 8888884 8899999999999964 55554
No 106
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.19 E-value=1.1e-12 Score=152.25 Aligned_cols=289 Identities=12% Similarity=0.021 Sum_probs=149.5
Q ss_pred CcceEEEEEeeccCCC-----CccccCCCCceeEEEeCCCCCCCCCCCCccccccccCcccceeeecc------------
Q 047321 466 GDKVRHLGLKFEEGAS-----FPMSIHGLNRLRTLLIYDQSPYNPSLSSSILPELFNKLACLRALVIR------------ 528 (807)
Q Consensus 466 ~~~~r~L~l~~~~~~~-----~~~~~~~l~~Lr~L~l~~~~~~~l~~~i~~LP~~i~~L~~L~~LdL~------------ 528 (807)
...+++|+++.+.+.. ++..+.++++|++|++.+| .+..+|..++++++|++|+++
T Consensus 191 ~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~-------~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~ 263 (592)
T 3ogk_B 191 NTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDF-------EILELVGFFKAAANLEEFCGGSLNEDIGMPEKY 263 (592)
T ss_dssp CCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSC-------BGGGGHHHHHHCTTCCEEEECBCCCCTTCTTSS
T ss_pred CCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCc-------cHHHHHHHHhhhhHHHhhcccccccccchHHHH
Confidence 3467777777666642 3344556777888887776 666777778888888888775
Q ss_pred ---ccCCccCeeEecCccCCCccccccccccccccCcccccCCCCCCChhHHHHhhccCCCCCCeEEEEeeccCCCcchh
Q 047321 529 ---QSLRTLEKFVVGGGVDGSNTCRLESLKNLQLLRECGIEGLGNVSHLDEAERLQLYNQQNLLRLRLRFGRVVDGEDEE 605 (807)
Q Consensus 529 ---~~L~~L~~l~~~~~~~~~~~~~i~~L~~L~~L~~L~i~~l~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~ 605 (807)
..+.+|..+.+.... .......+..+.+|+.|.+.+.. +. .......+.++++|+.|++. +.+ .
T Consensus 264 ~~l~~~~~L~~L~l~~~~---~~~l~~~~~~~~~L~~L~Ls~~~-l~--~~~~~~~~~~~~~L~~L~L~-~~~-----~- 330 (592)
T 3ogk_B 264 MNLVFPRKLCRLGLSYMG---PNEMPILFPFAAQIRKLDLLYAL-LE--TEDHCTLIQKCPNLEVLETR-NVI-----G- 330 (592)
T ss_dssp SCCCCCTTCCEEEETTCC---TTTGGGGGGGGGGCCEEEETTCC-CC--HHHHHHHHTTCTTCCEEEEE-GGG-----H-
T ss_pred HHhhccccccccCccccc---hhHHHHHHhhcCCCcEEecCCCc-CC--HHHHHHHHHhCcCCCEEecc-Ccc-----C-
Confidence 233445555444322 01122234456667777776643 22 12233346788888888887 321 0
Q ss_pred hhhchhhHHHHHHhhcCCCCCCCCCCCcc-cceEeccC----------CcCceeeCcc-----cCCCCCCCCCCCCCC-C
Q 047321 606 RRRKNEKDKQLLEALQPPLSHLPPLGKLP-LKKLELRD----------LESVKRVGNE-----FLGIEESSEDDPSSS-S 668 (807)
Q Consensus 606 ~~~~~~~~~~~l~~l~p~~~~lp~l~~L~-L~~L~L~~----------~~~l~~i~~~-----~~~~~~l~~~~~~~~-~ 668 (807)
+.....+. ..++ |++|+|++ |+.++..+.. ...+..|.+..+... .
T Consensus 331 ----~~~l~~~~-------------~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~ 393 (592)
T 3ogk_B 331 ----DRGLEVLA-------------QYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNE 393 (592)
T ss_dssp ----HHHHHHHH-------------HHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHH
T ss_pred ----HHHHHHHH-------------HhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHH
Confidence 00111111 2245 77777774 5444322110 001111111000000 0
Q ss_pred CCCccc-cCcccccccccC---CCccccchhhhccccCCCCCCcccEEEEccCCC-CCC-Ccccc-cCCCCccEEeeccC
Q 047321 669 SSPSVI-AFPKLKSLEIDG---MKELEEWNYRITRKENISIMPRLSSLQIMNCRK-LKA-LPDYL-LQTIALQKLSIYSC 741 (807)
Q Consensus 669 ~~~~~~-~l~~L~~L~l~~---~~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~-L~~-lp~~l-~~l~~L~~L~l~~c 741 (807)
.+..+. .+++|+.|++.. |+.+...|...+....+..+++|+.|+++.|.. +.. .+..+ ..+++|+.|+|++|
T Consensus 394 ~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n 473 (592)
T 3ogk_B 394 SLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYV 473 (592)
T ss_dssp HHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSC
T ss_pred HHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCC
Confidence 000111 256666666652 334443221000000122466777777766543 211 11112 23677778887776
Q ss_pred ccccc--ccccccccCCCCCCCCeeeeccCCCcc--cCCccCCCCCcccccccccchhhh
Q 047321 742 DLLEE--LPILEDRRTTDIPRLSSLAIWYCPKLK--VLPDYLLRTTTLQAGEQDYENEKF 797 (807)
Q Consensus 742 ~~l~~--lP~~~~~~~~~l~~L~~L~i~~c~~l~--~lP~~l~~l~~L~~L~l~~~~~~~ 797 (807)
. +.. +| ..+..+++|+.|++++|+ ++ .++..+..+++|+.|++++|++..
T Consensus 474 ~-l~~~~~~----~~~~~~~~L~~L~l~~n~-l~~~~~~~~~~~l~~L~~L~ls~n~it~ 527 (592)
T 3ogk_B 474 G-ESDEGLM----EFSRGCPNLQKLEMRGCC-FSERAIAAAVTKLPSLRYLWVQGYRASM 527 (592)
T ss_dssp C-SSHHHHH----HHHTCCTTCCEEEEESCC-CBHHHHHHHHHHCSSCCEEEEESCBCCT
T ss_pred C-CCHHHHH----HHHhcCcccCeeeccCCC-CcHHHHHHHHHhcCccCeeECcCCcCCH
Confidence 4 322 33 234567888888888887 43 245455677888888888888653
No 107
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.15 E-value=1.7e-10 Score=117.68 Aligned_cols=155 Identities=18% Similarity=0.208 Sum_probs=121.5
Q ss_pred CCCCeEEEEeeccCCCcchhhhhchhhHHHHHHhhcCCCCCCC--CCCCcc-cceEeccCCcCceeeCcccCCCCCCCCC
Q 047321 586 QNLLRLRLRFGRVVDGEDEERRRKNEKDKQLLEALQPPLSHLP--PLGKLP-LKKLELRDLESVKRVGNEFLGIEESSED 662 (807)
Q Consensus 586 ~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~l~p~~~~lp--~l~~L~-L~~L~L~~~~~l~~i~~~~~~~~~l~~~ 662 (807)
.+|+.|+|+.|.+ ..++ .++.++ |++|+|+++. ++.++...
T Consensus 35 ~~l~~L~L~~n~l--------------------------~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~--------- 78 (251)
T 3m19_A 35 ADTEKLDLQSTGL--------------------------ATLSDATFRGLTKLTWLNLDYNQ-LQTLSAGV--------- 78 (251)
T ss_dssp TTCCEEECTTSCC--------------------------CCCCTTTTTTCTTCCEEECTTSC-CCCCCTTT---------
T ss_pred CCCCEEEccCCCc--------------------------CccCHhHhcCcccCCEEECCCCc-CCccCHhH---------
Confidence 4789999998875 2233 378889 9999999853 55443321
Q ss_pred CCCCCCCCCccccCcccccccccCCCccccchhhhccccCCCCCCcccEEEEccCCCCCCCccc-ccCCCCccEEeeccC
Q 047321 663 DPSSSSSSPSVIAFPKLKSLEIDGMKELEEWNYRITRKENISIMPRLSSLQIMNCRKLKALPDY-LLQTIALQKLSIYSC 741 (807)
Q Consensus 663 ~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~lp~~-l~~l~~L~~L~l~~c 741 (807)
+..+++|+.|+++++ .+..++. ..+..+++|+.|++++| +++.+|.. +..+++|++|+++++
T Consensus 79 ----------~~~l~~L~~L~L~~n-~l~~~~~-----~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~Ls~N 141 (251)
T 3m19_A 79 ----------FDDLTELGTLGLANN-QLASLPL-----GVFDHLTQLDKLYLGGN-QLKSLPSGVFDRLTKLKELRLNTN 141 (251)
T ss_dssp ----------TTTCTTCCEEECTTS-CCCCCCT-----TTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS
T ss_pred ----------hccCCcCCEEECCCC-cccccCh-----hHhcccCCCCEEEcCCC-cCCCcChhHhccCCcccEEECcCC
Confidence 347899999999985 6666654 34568999999999999 78888865 578999999999996
Q ss_pred cccccccccccccCCCCCCCCeeeeccCCCcccCC-ccCCCCCcccccccccchhhhh
Q 047321 742 DLLEELPILEDRRTTDIPRLSSLAIWYCPKLKVLP-DYLLRTTTLQAGEQDYENEKFS 798 (807)
Q Consensus 742 ~~l~~lP~~~~~~~~~l~~L~~L~i~~c~~l~~lP-~~l~~l~~L~~L~l~~~~~~~~ 798 (807)
.+..+|. ..+..+++|++|++++| .++.+| ..+..+++|+.|++++|++...
T Consensus 142 -~l~~~~~---~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~~~c~ 194 (251)
T 3m19_A 142 -QLQSIPA---GAFDKLTNLQTLSLSTN-QLQSVPHGAFDRLGKLQTITLFGNQFDCS 194 (251)
T ss_dssp -CCCCCCT---TTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSCCBCTT
T ss_pred -cCCccCH---HHcCcCcCCCEEECCCC-cCCccCHHHHhCCCCCCEEEeeCCceeCC
Confidence 6778771 35788999999999985 566666 5788999999999999998654
No 108
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.14 E-value=6e-11 Score=134.72 Aligned_cols=32 Identities=6% Similarity=0.100 Sum_probs=15.6
Q ss_pred cEEEEccCCCCCCCcccccCCCCccEEeeccCc
Q 047321 710 SSLQIMNCRKLKALPDYLLQTIALQKLSIYSCD 742 (807)
Q Consensus 710 ~~L~l~~c~~L~~lp~~l~~l~~L~~L~l~~c~ 742 (807)
+.|++++| .++.+|..+..+++|+.|+|++|+
T Consensus 210 ~~L~Ls~N-~l~~lp~~l~~l~~L~~L~L~~N~ 241 (571)
T 3cvr_A 210 IFFRCREN-RITHIPENILSLDPTCTIILEDNP 241 (571)
T ss_dssp EEEECCSS-CCCCCCGGGGGSCTTEEEECCSSS
T ss_pred eEEecCCC-cceecCHHHhcCCCCCEEEeeCCc
Confidence 55555444 444455444445555555555443
No 109
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.13 E-value=5.3e-10 Score=114.03 Aligned_cols=171 Identities=20% Similarity=0.240 Sum_probs=107.9
Q ss_pred ceEEEEEeeccCCCCccccCCCCceeEEEeCCCCCCCCCCCCcccc-ccccCcccceeeeccccCCccCeeEecCccCCC
Q 047321 468 KVRHLGLKFEEGASFPMSIHGLNRLRTLLIYDQSPYNPSLSSSILP-ELFNKLACLRALVIRQSLRTLEKFVVGGGVDGS 546 (807)
Q Consensus 468 ~~r~L~l~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~l~~~i~~LP-~~i~~L~~L~~LdL~~~L~~L~~l~~~~~~~~~ 546 (807)
..++++++++.++.+|..+. ++|++|+++++ .+..++ ..++++++|++|+|+.+
T Consensus 15 ~~~~l~~~~~~l~~~p~~~~--~~l~~L~L~~n-------~l~~~~~~~~~~l~~L~~L~L~~n---------------- 69 (251)
T 3m19_A 15 GKKEVDCQGKSLDSVPSGIP--ADTEKLDLQST-------GLATLSDATFRGLTKLTWLNLDYN---------------- 69 (251)
T ss_dssp GGTEEECTTCCCSSCCSCCC--TTCCEEECTTS-------CCCCCCTTTTTTCTTCCEEECTTS----------------
T ss_pred CCeEEecCCCCccccCCCCC--CCCCEEEccCC-------CcCccCHhHhcCcccCCEEECCCC----------------
Confidence 44567777777777776665 57788888877 555554 45777777777777511
Q ss_pred ccccccccccccccCcccccCCCCCCChhHHHHhhccCCCCCCeEEEEeeccCCCcchhhhhchhhHHHHHHhhcCCCCC
Q 047321 547 NTCRLESLKNLQLLRECGIEGLGNVSHLDEAERLQLYNQQNLLRLRLRFGRVVDGEDEERRRKNEKDKQLLEALQPPLSH 626 (807)
Q Consensus 547 ~~~~i~~L~~L~~L~~L~i~~l~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~l~p~~~~ 626 (807)
.+..+ . ...+.++++|+.|+|+.|.+ ..
T Consensus 70 ---~l~~~-----------------~------~~~~~~l~~L~~L~L~~n~l--------------------------~~ 97 (251)
T 3m19_A 70 ---QLQTL-----------------S------AGVFDDLTELGTLGLANNQL--------------------------AS 97 (251)
T ss_dssp ---CCCCC-----------------C------TTTTTTCTTCCEEECTTSCC--------------------------CC
T ss_pred ---cCCcc-----------------C------HhHhccCCcCCEEECCCCcc--------------------------cc
Confidence 11100 0 01245567777888877764 23
Q ss_pred CCC--CCCcc-cceEeccCCcCceeeCcccCCCCCCCCCCCCCCCCCCccccCcccccccccCCCccccchhhhccccCC
Q 047321 627 LPP--LGKLP-LKKLELRDLESVKRVGNEFLGIEESSEDDPSSSSSSPSVIAFPKLKSLEIDGMKELEEWNYRITRKENI 703 (807)
Q Consensus 627 lp~--l~~L~-L~~L~L~~~~~l~~i~~~~~~~~~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~ 703 (807)
+|. ++.++ |++|+|+++ .++.++... +..+++|+.|+++++ .+..++. ..+
T Consensus 98 ~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~-------------------~~~l~~L~~L~Ls~N-~l~~~~~-----~~~ 151 (251)
T 3m19_A 98 LPLGVFDHLTQLDKLYLGGN-QLKSLPSGV-------------------FDRLTKLKELRLNTN-QLQSIPA-----GAF 151 (251)
T ss_dssp CCTTTTTTCTTCCEEECCSS-CCCCCCTTT-------------------TTTCTTCCEEECCSS-CCCCCCT-----TTT
T ss_pred cChhHhcccCCCCEEEcCCC-cCCCcChhH-------------------hccCCcccEEECcCC-cCCccCH-----HHc
Confidence 332 56777 888888764 355444321 235778888888774 5665553 335
Q ss_pred CCCCcccEEEEccCCCCCCCcc-cccCCCCccEEeeccCc
Q 047321 704 SIMPRLSSLQIMNCRKLKALPD-YLLQTIALQKLSIYSCD 742 (807)
Q Consensus 704 ~~l~~L~~L~l~~c~~L~~lp~-~l~~l~~L~~L~l~~c~ 742 (807)
..+++|+.|++++| .+..+|. .+..+++|+.|++++++
T Consensus 152 ~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~ 190 (251)
T 3m19_A 152 DKLTNLQTLSLSTN-QLQSVPHGAFDRLGKLQTITLFGNQ 190 (251)
T ss_dssp TTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSCC
T ss_pred CcCcCCCEEECCCC-cCCccCHHHHhCCCCCCEEEeeCCc
Confidence 56778888888877 5666654 56677788888887764
No 110
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.12 E-value=4.7e-12 Score=136.98 Aligned_cols=265 Identities=13% Similarity=0.116 Sum_probs=157.3
Q ss_pred EEEeeccCCC-CccccCCCCceeEEEeCCCCCCCCCCCCcccc-----ccccCcc-cceeeeccccCCccCeeEecCccC
Q 047321 472 LGLKFEEGAS-FPMSIHGLNRLRTLLIYDQSPYNPSLSSSILP-----ELFNKLA-CLRALVIRQSLRTLEKFVVGGGVD 544 (807)
Q Consensus 472 L~l~~~~~~~-~~~~~~~l~~Lr~L~l~~~~~~~l~~~i~~LP-----~~i~~L~-~L~~LdL~~~L~~L~~l~~~~~~~ 544 (807)
..++.+.+.. .|..+...++|++|++++| .+...+ ..+.+++ +|++|+|+.+ .+.
T Consensus 3 ~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n-------~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N--~l~--------- 64 (362)
T 3goz_A 3 YKLTLHPGSNPVEEFTSIPHGVTSLDLSLN-------NLYSISTVELIQAFANTPASVTSLNLSGN--SLG--------- 64 (362)
T ss_dssp EECCCCTTCCHHHHHHTSCTTCCEEECTTS-------CGGGSCHHHHHHHHHTCCTTCCEEECCSS--CGG---------
T ss_pred cccccccchHHHHHHHhCCCCceEEEccCC-------CCChHHHHHHHHHHHhCCCceeEEECcCC--CCC---------
Confidence 3456666665 4444555566999999987 666665 5677787 8888888722 111
Q ss_pred CCccccccccccc-----cccCcccccCCCCCCChhHHHHhhccCC-CCCCeEEEEeeccCCCcchhhhhchhhHHHHHH
Q 047321 545 GSNTCRLESLKNL-----QLLRECGIEGLGNVSHLDEAERLQLYNQ-QNLLRLRLRFGRVVDGEDEERRRKNEKDKQLLE 618 (807)
Q Consensus 545 ~~~~~~i~~L~~L-----~~L~~L~i~~l~~~~~~~~~~~~~l~~l-~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~ 618 (807)
......+..+ .+|+.|.+++..--..........+..+ ++|+.|++++|.+..... ..+..
T Consensus 65 ---~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~----------~~l~~ 131 (362)
T 3goz_A 65 ---FKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSS----------SEFKQ 131 (362)
T ss_dssp ---GSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCH----------HHHHH
T ss_pred ---HHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHH----------HHHHH
Confidence 1112222222 5666666665321111223334445666 799999999888522110 11111
Q ss_pred hhcCCCCCCCCCCCc-c-cceEeccCCcCceeeCcccCCCCCCCCCCCCCCCCCCccccCc-ccccccccCCCccccchh
Q 047321 619 ALQPPLSHLPPLGKL-P-LKKLELRDLESVKRVGNEFLGIEESSEDDPSSSSSSPSVIAFP-KLKSLEIDGMKELEEWNY 695 (807)
Q Consensus 619 ~l~p~~~~lp~l~~L-~-L~~L~L~~~~~l~~i~~~~~~~~~l~~~~~~~~~~~~~~~~l~-~L~~L~l~~~~~l~~~~~ 695 (807)
. +..+ + |++|+|+++. ++..+..... ..+..++ +|+.|++++| .+.....
T Consensus 132 ~----------l~~~~~~L~~L~Ls~N~-l~~~~~~~l~---------------~~l~~~~~~L~~L~Ls~n-~l~~~~~ 184 (362)
T 3goz_A 132 A----------FSNLPASITSLNLRGND-LGIKSSDELI---------------QILAAIPANVNSLNLRGN-NLASKNC 184 (362)
T ss_dssp H----------HTTSCTTCCEEECTTSC-GGGSCHHHHH---------------HHHHTSCTTCCEEECTTS-CGGGSCH
T ss_pred H----------HHhCCCceeEEEccCCc-CCHHHHHHHH---------------HHHhcCCccccEeeecCC-CCchhhH
Confidence 1 1222 3 8999998854 4432211000 0012344 8999999986 4543322
Q ss_pred -hhccccCCCCC-CcccEEEEccCCCCCC-----CcccccC-CCCccEEeeccCcccccccc-cccccCCCCCCCCeeee
Q 047321 696 -RITRKENISIM-PRLSSLQIMNCRKLKA-----LPDYLLQ-TIALQKLSIYSCDLLEELPI-LEDRRTTDIPRLSSLAI 766 (807)
Q Consensus 696 -~~~~~~~~~~l-~~L~~L~l~~c~~L~~-----lp~~l~~-l~~L~~L~l~~c~~l~~lP~-~~~~~~~~l~~L~~L~i 766 (807)
.+ ...+..+ ++|+.|++++| .+.. +|..+.. .++|++|++++| .+...+. .-...+..+++|+.|++
T Consensus 185 ~~l--~~~l~~~~~~L~~L~Ls~N-~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N-~l~~~~~~~l~~~~~~l~~L~~L~L 260 (362)
T 3goz_A 185 AEL--AKFLASIPASVTSLDLSAN-LLGLKSYAELAYIFSSIPNHVVSLNLCLN-CLHGPSLENLKLLKDSLKHLQTVYL 260 (362)
T ss_dssp HHH--HHHHHTSCTTCCEEECTTS-CGGGSCHHHHHHHHHHSCTTCCEEECCSS-CCCCCCHHHHHHTTTTTTTCSEEEE
T ss_pred HHH--HHHHHhCCCCCCEEECCCC-CCChhHHHHHHHHHhcCCCCceEEECcCC-CCCcHHHHHHHHHHhcCCCccEEEe
Confidence 00 0112245 49999999998 5665 5655655 358999999996 4655430 00023467889999999
Q ss_pred ccCC-------CcccCCccCCCCCcccccccccchhhhh
Q 047321 767 WYCP-------KLKVLPDYLLRTTTLQAGEQDYENEKFS 798 (807)
Q Consensus 767 ~~c~-------~l~~lP~~l~~l~~L~~L~l~~~~~~~~ 798 (807)
++|. .+..++..+.+++.|+.||+++|++...
T Consensus 261 ~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~~ 299 (362)
T 3goz_A 261 DYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPS 299 (362)
T ss_dssp EHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCGG
T ss_pred ccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCCc
Confidence 9875 2445666788899999999999988655
No 111
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.08 E-value=1.1e-10 Score=123.24 Aligned_cols=207 Identities=20% Similarity=0.154 Sum_probs=123.9
Q ss_pred CCceeEEEeCCCCCCCCCCCC-ccccccc--cCcccceeeecccc-CCccCeeEecCccCCCccccccccccccccCccc
Q 047321 489 LNRLRTLLIYDQSPYNPSLSS-SILPELF--NKLACLRALVIRQS-LRTLEKFVVGGGVDGSNTCRLESLKNLQLLRECG 564 (807)
Q Consensus 489 l~~Lr~L~l~~~~~~~l~~~i-~~LP~~i--~~L~~L~~LdL~~~-L~~L~~l~~~~~~~~~~~~~i~~L~~L~~L~~L~ 564 (807)
+++|++|++++| .+ ...|..+ +++++|++|+|+.+ +..... ......+..+.+|+.|.
T Consensus 90 ~~~L~~L~l~~n-------~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~-----------~~~~~~~~~~~~L~~L~ 151 (310)
T 4glp_A 90 YSRLKELTLEDL-------KITGTMPPLPLEATGLALSSLRLRNVSWATGRS-----------WLAELQQWLKPGLKVLS 151 (310)
T ss_dssp HSCCCEEEEESC-------CCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTS-----------SHHHHHTTBCSCCCEEE
T ss_pred cCceeEEEeeCC-------EeccchhhhhhhccCCCCCEEEeecccccchhh-----------hhHHHHhhhccCCCEEE
Confidence 455777777776 33 3455555 77777777777622 110000 00001122344555555
Q ss_pred ccCCCCCCChhHHHHhhccCCCCCCeEEEEeeccCCCcchhhhhchhhHHHHHHhhcCCCCCCCCCCCcc-cceEeccCC
Q 047321 565 IEGLGNVSHLDEAERLQLYNQQNLLRLRLRFGRVVDGEDEERRRKNEKDKQLLEALQPPLSHLPPLGKLP-LKKLELRDL 643 (807)
Q Consensus 565 i~~l~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~l~p~~~~lp~l~~L~-L~~L~L~~~ 643 (807)
+.+.. +.......+.++++|+.|+|++|.+.. . ..+.+ ...++.++ |++|+|+++
T Consensus 152 Ls~n~----l~~~~~~~~~~l~~L~~L~Ls~N~l~~------------~----~~~~~----~~~~~~l~~L~~L~Ls~N 207 (310)
T 4glp_A 152 IAQAH----SPAFSCEQVRAFPALTSLDLSDNPGLG------------E----RGLMA----ALCPHKFPAIQNLALRNT 207 (310)
T ss_dssp EECCS----SCCCCTTSCCCCTTCCEEECCSCTTCH------------H----HHHHT----TSCTTSSCCCCSCBCCSS
T ss_pred eeCCC----cchhhHHHhccCCCCCEEECCCCCCcc------------c----hhhhH----HHhhhcCCCCCEEECCCC
Confidence 54311 111112246788899999999886310 0 00000 01135778 999999885
Q ss_pred cCceeeCcccCCCCCCCCCCCCCCCCCCccccCcccccccccCCCccccc-hhhhccccCCCC---CCcccEEEEccCCC
Q 047321 644 ESVKRVGNEFLGIEESSEDDPSSSSSSPSVIAFPKLKSLEIDGMKELEEW-NYRITRKENISI---MPRLSSLQIMNCRK 719 (807)
Q Consensus 644 ~~l~~i~~~~~~~~~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~-~~~~~~~~~~~~---l~~L~~L~l~~c~~ 719 (807)
. ++.++...... ...+++|+.|+++++ .+... |. .+.. +++|+.|++++| +
T Consensus 208 ~-l~~l~~~~~~l----------------~~~l~~L~~L~Ls~N-~l~~~~p~------~~~~~~~~~~L~~L~Ls~N-~ 262 (310)
T 4glp_A 208 G-METPTGVCAAL----------------AAAGVQPHSLDLSHN-SLRATVNP------SAPRCMWSSALNSLNLSFA-G 262 (310)
T ss_dssp C-CCCHHHHHHHH----------------HHHTCCCSSEECTTS-CCCCCCCS------CCSSCCCCTTCCCEECCSS-C
T ss_pred C-CCchHHHHHHH----------------HhcCCCCCEEECCCC-CCCccchh------hHHhccCcCcCCEEECCCC-C
Confidence 4 54443210000 236789999999985 45554 32 2233 379999999988 7
Q ss_pred CCCCcccccCCCCccEEeeccCcccccccccccccCCCCCCCCeeeeccCC
Q 047321 720 LKALPDYLLQTIALQKLSIYSCDLLEELPILEDRRTTDIPRLSSLAIWYCP 770 (807)
Q Consensus 720 L~~lp~~l~~l~~L~~L~l~~c~~l~~lP~~~~~~~~~l~~L~~L~i~~c~ 770 (807)
++.+|..+. ++|+.|++++| .+..+| . ...+++|+.|++++++
T Consensus 263 l~~lp~~~~--~~L~~L~Ls~N-~l~~~~----~-~~~l~~L~~L~L~~N~ 305 (310)
T 4glp_A 263 LEQVPKGLP--AKLRVLDLSSN-RLNRAP----Q-PDELPEVDNLTLDGNP 305 (310)
T ss_dssp CCSCCSCCC--SCCSCEECCSC-CCCSCC----C-TTSCCCCSCEECSSTT
T ss_pred CCchhhhhc--CCCCEEECCCC-cCCCCc----h-hhhCCCccEEECcCCC
Confidence 889998774 89999999985 677777 3 5778999999999865
No 112
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.07 E-value=7e-10 Score=110.57 Aligned_cols=136 Identities=9% Similarity=0.100 Sum_probs=106.5
Q ss_pred cceEeccCCcCceeeCcccCCCCCCCCCCCCCCCCCCccccCcccccccccCCCccccchhhhccccCCCCCCcccEEEE
Q 047321 635 LKKLELRDLESVKRVGNEFLGIEESSEDDPSSSSSSPSVIAFPKLKSLEIDGMKELEEWNYRITRKENISIMPRLSSLQI 714 (807)
Q Consensus 635 L~~L~L~~~~~l~~i~~~~~~~~~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~l~~L~~L~l 714 (807)
+++|+|+++ .++.++... .+..+++|+.|+++++ .+..++. ..+..+++|+.|++
T Consensus 34 ~~~L~L~~N-~l~~~~~~~------------------~~~~l~~L~~L~L~~N-~i~~i~~-----~~~~~l~~L~~L~L 88 (220)
T 2v70_A 34 TAELRLNNN-EFTVLEATG------------------IFKKLPQLRKINFSNN-KITDIEE-----GAFEGASGVNEILL 88 (220)
T ss_dssp CSEEECCSS-CCCEECCCC------------------CGGGCTTCCEEECCSS-CCCEECT-----TTTTTCTTCCEEEC
T ss_pred CCEEEcCCC-cCCccCchh------------------hhccCCCCCEEECCCC-cCCEECH-----HHhCCCCCCCEEEC
Confidence 899999874 466553210 1347899999999985 5766653 35678999999999
Q ss_pred ccCCCCCCCccc-ccCCCCccEEeeccCcccccc-cccccccCCCCCCCCeeeeccCCCcccC-CccCCCCCcccccccc
Q 047321 715 MNCRKLKALPDY-LLQTIALQKLSIYSCDLLEEL-PILEDRRTTDIPRLSSLAIWYCPKLKVL-PDYLLRTTTLQAGEQD 791 (807)
Q Consensus 715 ~~c~~L~~lp~~-l~~l~~L~~L~l~~c~~l~~l-P~~~~~~~~~l~~L~~L~i~~c~~l~~l-P~~l~~l~~L~~L~l~ 791 (807)
++| .+..+|.. +..+++|++|+++++ .+..+ | ..+..+++|+.|++++| .++.+ |..+..+++|+.|+++
T Consensus 89 s~N-~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~----~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~ 161 (220)
T 2v70_A 89 TSN-RLENVQHKMFKGLESLKTLMLRSN-RITCVGN----DSFIGLSSVRLLSLYDN-QITTVAPGAFDTLHSLSTLNLL 161 (220)
T ss_dssp CSS-CCCCCCGGGGTTCSSCCEEECTTS-CCCCBCT----TSSTTCTTCSEEECTTS-CCCCBCTTTTTTCTTCCEEECC
T ss_pred CCC-ccCccCHhHhcCCcCCCEEECCCC-cCCeECH----hHcCCCccCCEEECCCC-cCCEECHHHhcCCCCCCEEEec
Confidence 999 67777654 889999999999996 46665 4 67789999999999985 45665 7899999999999999
Q ss_pred cchhhhhhhhh
Q 047321 792 YENEKFSQRIA 802 (807)
Q Consensus 792 ~~~~~~~~~~~ 802 (807)
+|++...-++.
T Consensus 162 ~N~l~c~c~l~ 172 (220)
T 2v70_A 162 ANPFNCNCYLA 172 (220)
T ss_dssp SCCEECSGGGH
T ss_pred CcCCcCCCchH
Confidence 99987554433
No 113
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.05 E-value=1.5e-12 Score=148.66 Aligned_cols=102 Identities=15% Similarity=0.067 Sum_probs=70.4
Q ss_pred ccCcccccccccCCCccccchhhhccccCCCCCCcccEEEEccCCCCCCCcccccCCCCccEEeeccCcccccc--cccc
Q 047321 674 IAFPKLKSLEIDGMKELEEWNYRITRKENISIMPRLSSLQIMNCRKLKALPDYLLQTIALQKLSIYSCDLLEEL--PILE 751 (807)
Q Consensus 674 ~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~lp~~l~~l~~L~~L~l~~c~~l~~l--P~~~ 751 (807)
+.+++|+.|+|+++ .+..+|. .+..+++|+.|++++| .++.+| .++.+++|+.|++++| .+..+ |
T Consensus 460 ~~l~~L~~L~Ls~N-~l~~lp~------~~~~l~~L~~L~Ls~N-~l~~lp-~l~~l~~L~~L~Ls~N-~l~~~~~p--- 526 (567)
T 1dce_A 460 EQLLLVTHLDLSHN-RLRALPP------ALAALRCLEVLQASDN-ALENVD-GVANLPRLQELLLCNN-RLQQSAAI--- 526 (567)
T ss_dssp GGGTTCCEEECCSS-CCCCCCG------GGGGCTTCCEEECCSS-CCCCCG-GGTTCSSCCEEECCSS-CCCSSSTT---
T ss_pred cccccCcEeecCcc-cccccch------hhhcCCCCCEEECCCC-CCCCCc-ccCCCCCCcEEECCCC-CCCCCCCc---
Confidence 46777888888774 5665554 4557788888888877 677777 7778888888888775 45555 6
Q ss_pred cccCCCCCCCCeeeeccCCCcccCCccCC----CCCccccccc
Q 047321 752 DRRTTDIPRLSSLAIWYCPKLKVLPDYLL----RTTTLQAGEQ 790 (807)
Q Consensus 752 ~~~~~~l~~L~~L~i~~c~~l~~lP~~l~----~l~~L~~L~l 790 (807)
..+..+++|+.|++++|+ ++.+|..+. .+++|+.|++
T Consensus 527 -~~l~~l~~L~~L~L~~N~-l~~~~~~~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 527 -QPLVSCPRLVLLNLQGNS-LCQEEGIQERLAEMLPSVSSILT 567 (567)
T ss_dssp -GGGGGCTTCCEEECTTSG-GGGSSSCTTHHHHHCTTCSEEEC
T ss_pred -HHHhcCCCCCEEEecCCc-CCCCccHHHHHHHHCcccCccCC
Confidence 667778888888888744 555554332 3667776653
No 114
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.04 E-value=2.4e-09 Score=113.50 Aligned_cols=181 Identities=15% Similarity=0.122 Sum_probs=117.5
Q ss_pred CccccccchHHHHHHHHhCCCCCCCCCceEEEEEccCCChHHHHHHHHHcCcccccccc-eEEEEEeCCCCCHHHHHHHH
Q 047321 104 GGVCGRVDEKNELLSKLLCGSSEQQKGLDVISLVGLGGIGKTTLAQLAYNNDEVKRNFE-KVIWVCVSNTFEEISVAKAI 182 (807)
Q Consensus 104 ~~~vGR~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~-~~~wv~~~~~~~~~~~~~~i 182 (807)
.+++|++..++.+.+++... ..+.+.|+|++|+||||+|+.+++... ...+. ..++++.++.....
T Consensus 21 ~~~~g~~~~~~~l~~~l~~~------~~~~~ll~G~~G~GKt~la~~l~~~l~-~~~~~~~~~~~~~~~~~~~~------ 87 (323)
T 1sxj_B 21 SDIVGNKETIDRLQQIAKDG------NMPHMIISGMPGIGKTTSVHCLAHELL-GRSYADGVLELNASDDRGID------ 87 (323)
T ss_dssp GGCCSCTHHHHHHHHHHHSC------CCCCEEEECSTTSSHHHHHHHHHHHHH-GGGHHHHEEEECTTSCCSHH------
T ss_pred HHHHCCHHHHHHHHHHHHcC------CCCeEEEECcCCCCHHHHHHHHHHHhc-CCcccCCEEEecCccccChH------
Confidence 46999999999999998743 233389999999999999999987311 11111 23344333322221
Q ss_pred HHHcCCCCCCCccHHHHHHHHHHHH-------hCCceEEEEeCCCCCCccChHHHHHhhcCCCCCcEEEEEcCCHHH-HH
Q 047321 183 IEGLGVSAFGLSEFESLMKQIQEYI-------TGKKIFLVLDDVWDGDYKKWDPFFSCLKNGHHESKILITTHDRSV-AL 254 (807)
Q Consensus 183 ~~~l~~~~~~~~~~~~~~~~l~~~l-------~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~IliTTR~~~v-~~ 254 (807)
.+...+.... .+++.++|+||++.-....++.+...+.....++++|+||+...- ..
T Consensus 88 ---------------~i~~~~~~~~~~~~~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~~~~~~~l~~ 152 (323)
T 1sxj_B 88 ---------------VVRNQIKHFAQKKLHLPPGKHKIVILDEADSMTAGAQQALRRTMELYSNSTRFAFACNQSNKIIE 152 (323)
T ss_dssp ---------------HHHTHHHHHHHBCCCCCTTCCEEEEEESGGGSCHHHHHTTHHHHHHTTTTEEEEEEESCGGGSCH
T ss_pred ---------------HHHHHHHHHHhccccCCCCCceEEEEECcccCCHHHHHHHHHHHhccCCCceEEEEeCChhhchh
Confidence 1222222222 356889999999765555566677777666667888888876431 11
Q ss_pred -HhCCCceEeCCCCChhhHHHHHHHHHhccCCccCccchHHHHHHHHHHcCCCHH-HHHHHHHH
Q 047321 255 -QLGSIDIIPVKELGEGECWLLFKQIAFLRRSFEDCEKLEPIGRKIASKCKGLPL-AAKVIGNL 316 (807)
Q Consensus 255 -~~~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~~~~I~~~c~glPL-ai~~~~~~ 316 (807)
.......+++.+++.++..+++...+...+.. --.+.+..|++.++|.|. |+..+...
T Consensus 153 ~l~sr~~~i~~~~~~~~~~~~~l~~~~~~~~~~----~~~~~~~~l~~~~~G~~r~a~~~l~~~ 212 (323)
T 1sxj_B 153 PLQSQCAILRYSKLSDEDVLKRLLQIIKLEDVK----YTNDGLEAIIFTAEGDMRQAINNLQST 212 (323)
T ss_dssp HHHTTSEEEECCCCCHHHHHHHHHHHHHHHTCC----BCHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHhhceEEeecCCCHHHHHHHHHHHHHHcCCC----CCHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 11234589999999999999999877433221 123567889999999995 45555443
No 115
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.03 E-value=3e-11 Score=131.90 Aligned_cols=246 Identities=17% Similarity=0.162 Sum_probs=149.8
Q ss_pred CcceEEEEEeeccCCC-----CccccCCCCceeEEEeCCCCCCCCCCCCccccccc-------cCcccceeeeccccCCc
Q 047321 466 GDKVRHLGLKFEEGAS-----FPMSIHGLNRLRTLLIYDQSPYNPSLSSSILPELF-------NKLACLRALVIRQSLRT 533 (807)
Q Consensus 466 ~~~~r~L~l~~~~~~~-----~~~~~~~l~~Lr~L~l~~~~~~~l~~~i~~LP~~i-------~~L~~L~~LdL~~~L~~ 533 (807)
...+++|++++|.+.. ++..+..+++|++|++++|.. +.....+|..+ .++++|++|+|+.+-
T Consensus 31 ~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~---~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~-- 105 (386)
T 2ca6_A 31 DDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFT---GRVKDEIPEALRLLLQALLKCPKLHTVRLSDNA-- 105 (386)
T ss_dssp CSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCT---TSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCC--
T ss_pred CCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCccccc---CccccchhHHHHHHHHHHhhCCcccEEECCCCc--
Confidence 3568999999987764 344578899999999998610 00112345444 788999999997321
Q ss_pred cCeeEecCccCCCccccccccccccccCcccccCCCCCCChhHHHHhhccCC---------CCCCeEEEEeeccCCCcch
Q 047321 534 LEKFVVGGGVDGSNTCRLESLKNLQLLRECGIEGLGNVSHLDEAERLQLYNQ---------QNLLRLRLRFGRVVDGEDE 604 (807)
Q Consensus 534 L~~l~~~~~~~~~~~~~i~~L~~L~~L~~L~i~~l~~~~~~~~~~~~~l~~l---------~~L~~L~L~~~~~~~~~~~ 604 (807)
+. ... .......+..+++|+.|.+++..--..........+..+ ++|+.|++++|.+.+.
T Consensus 106 l~-----~~~---~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~--- 174 (386)
T 2ca6_A 106 FG-----PTA---QEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENG--- 174 (386)
T ss_dssp CC-----TTT---HHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGG---
T ss_pred CC-----HHH---HHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcH---
Confidence 00 000 001233466777788887776321000112222234444 8999999998875210
Q ss_pred hhhhchhhHHHHHHhhcCCCCCCCCCCCcc-cceEeccCCcCceeeCcccCCCCCCCCCCCCCCCCCCccccCccccccc
Q 047321 605 ERRRKNEKDKQLLEALQPPLSHLPPLGKLP-LKKLELRDLESVKRVGNEFLGIEESSEDDPSSSSSSPSVIAFPKLKSLE 683 (807)
Q Consensus 605 ~~~~~~~~~~~~l~~l~p~~~~lp~l~~L~-L~~L~L~~~~~l~~i~~~~~~~~~l~~~~~~~~~~~~~~~~l~~L~~L~ 683 (807)
....+.. .+..++ |++|++++|. ++..+..... +..+..+++|+.|+
T Consensus 175 -------~~~~l~~----------~l~~~~~L~~L~L~~n~-l~~~g~~~l~--------------~~~l~~~~~L~~L~ 222 (386)
T 2ca6_A 175 -------SMKEWAK----------TFQSHRLLHTVKMVQNG-IRPEGIEHLL--------------LEGLAYCQELKVLD 222 (386)
T ss_dssp -------GHHHHHH----------HHHHCTTCCEEECCSSC-CCHHHHHHHH--------------HTTGGGCTTCCEEE
T ss_pred -------HHHHHHH----------HHHhCCCcCEEECcCCC-CCHhHHHHHH--------------HHHhhcCCCccEEE
Confidence 1111111 133456 9999999864 4421100000 00144789999999
Q ss_pred ccCCCcc-----ccchhhhccccCCCCCCcccEEEEccCCCCCC-----Ccccc--cCCCCccEEeeccCccccc-----
Q 047321 684 IDGMKEL-----EEWNYRITRKENISIMPRLSSLQIMNCRKLKA-----LPDYL--LQTIALQKLSIYSCDLLEE----- 746 (807)
Q Consensus 684 l~~~~~l-----~~~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~-----lp~~l--~~l~~L~~L~l~~c~~l~~----- 746 (807)
|+++. + ..++. .+..+++|+.|++++| .+.. +|..+ +.+++|+.|+|++|. +..
T Consensus 223 Ls~n~-l~~~g~~~l~~------~l~~~~~L~~L~L~~n-~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~-i~~~g~~~ 293 (386)
T 2ca6_A 223 LQDNT-FTHLGSSALAI------ALKSWPNLRELGLNDC-LLSARGAAAVVDAFSKLENIGLQTLRLQYNE-IELDAVRT 293 (386)
T ss_dssp CCSSC-CHHHHHHHHHH------HGGGCTTCCEEECTTC-CCCHHHHHHHHHHHHTCSSCCCCEEECCSSC-CBHHHHHH
T ss_pred CcCCC-CCcHHHHHHHH------HHccCCCcCEEECCCC-CCchhhHHHHHHHHhhccCCCeEEEECcCCc-CCHHHHHH
Confidence 99864 4 22332 3457899999999999 4653 46666 348999999999975 444
Q ss_pred ccccccccC-CCCCCCCeeeeccCCCc
Q 047321 747 LPILEDRRT-TDIPRLSSLAIWYCPKL 772 (807)
Q Consensus 747 lP~~~~~~~-~~l~~L~~L~i~~c~~l 772 (807)
+| ..+ .++++|++|++++|+.-
T Consensus 294 l~----~~l~~~l~~L~~L~l~~N~l~ 316 (386)
T 2ca6_A 294 LK----TVIDEKMPDLLFLELNGNRFS 316 (386)
T ss_dssp HH----HHHHHHCTTCCEEECTTSBSC
T ss_pred HH----HHHHhcCCCceEEEccCCcCC
Confidence 76 444 56899999999987643
No 116
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.02 E-value=1.8e-11 Score=141.74 Aligned_cols=108 Identities=15% Similarity=0.094 Sum_probs=70.9
Q ss_pred ccCcccccccccCCCc-cccchhhhccccCCCCCCcccEEEEccCCCCC--CCcccccCCCCccEEeeccCccccc--cc
Q 047321 674 IAFPKLKSLEIDGMKE-LEEWNYRITRKENISIMPRLSSLQIMNCRKLK--ALPDYLLQTIALQKLSIYSCDLLEE--LP 748 (807)
Q Consensus 674 ~~l~~L~~L~l~~~~~-l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~L~--~lp~~l~~l~~L~~L~l~~c~~l~~--lP 748 (807)
.++++|+.|++++|.+ +..-.. ......+++|+.|++++| .+. .++..+..+++|++|+|++|+ +.. ++
T Consensus 433 ~~~~~L~~L~L~~~~~~l~~~~~----~~~~~~~~~L~~L~L~~n-~l~~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~ 506 (592)
T 3ogk_B 433 IGCKKLRRFAFYLRQGGLTDLGL----SYIGQYSPNVRWMLLGYV-GESDEGLMEFSRGCPNLQKLEMRGCC-FSERAIA 506 (592)
T ss_dssp HHCTTCCEEEEECCGGGCCHHHH----HHHHHSCTTCCEEEECSC-CSSHHHHHHHHTCCTTCCEEEEESCC-CBHHHHH
T ss_pred HhCCCCCEEEEecCCCCccHHHH----HHHHHhCccceEeeccCC-CCCHHHHHHHHhcCcccCeeeccCCC-CcHHHHH
Confidence 3689999999987764 222111 011125899999999988 454 345556788999999999997 433 33
Q ss_pred ccccccCCCCCCCCeeeeccCCCcccCC--ccCCCCCccccccccc
Q 047321 749 ILEDRRTTDIPRLSSLAIWYCPKLKVLP--DYLLRTTTLQAGEQDY 792 (807)
Q Consensus 749 ~~~~~~~~~l~~L~~L~i~~c~~l~~lP--~~l~~l~~L~~L~l~~ 792 (807)
.....+++|++|++++|+ ++... .-...++.|....+..
T Consensus 507 ----~~~~~l~~L~~L~ls~n~-it~~~~~~l~~~~p~l~~~~~~~ 547 (592)
T 3ogk_B 507 ----AAVTKLPSLRYLWVQGYR-ASMTGQDLMQMARPYWNIELIPS 547 (592)
T ss_dssp ----HHHHHCSSCCEEEEESCB-CCTTCTTGGGGCCTTEEEEEECC
T ss_pred ----HHHHhcCccCeeECcCCc-CCHHHHHHHHHhCCCcEEEEecC
Confidence 233468999999999988 44321 1123456555544444
No 117
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.02 E-value=3.7e-10 Score=110.51 Aligned_cols=131 Identities=17% Similarity=0.243 Sum_probs=106.5
Q ss_pred CCcc-cceEeccCCcCceeeCcccCCCCCCCCCCCCCCCCCCccccCcccccccccCCCccccchhhhccccCCCCCCcc
Q 047321 631 GKLP-LKKLELRDLESVKRVGNEFLGIEESSEDDPSSSSSSPSVIAFPKLKSLEIDGMKELEEWNYRITRKENISIMPRL 709 (807)
Q Consensus 631 ~~L~-L~~L~L~~~~~l~~i~~~~~~~~~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~l~~L 709 (807)
+.++ |+.|+++++. ++.++ . +..+++|+.|+++++ .+..++ .+..+++|
T Consensus 41 ~~l~~L~~L~l~~n~-i~~l~-~--------------------l~~l~~L~~L~l~~n-~~~~~~-------~l~~l~~L 90 (197)
T 4ezg_A 41 AQMNSLTYITLANIN-VTDLT-G--------------------IEYAHNIKDLTINNI-HATNYN-------PISGLSNL 90 (197)
T ss_dssp HHHHTCCEEEEESSC-CSCCT-T--------------------GGGCTTCSEEEEESC-CCSCCG-------GGTTCTTC
T ss_pred hhcCCccEEeccCCC-ccChH-H--------------------HhcCCCCCEEEccCC-CCCcch-------hhhcCCCC
Confidence 5678 9999998753 44444 1 458999999999997 555554 35679999
Q ss_pred cEEEEccCCCCCC-CcccccCCCCccEEeeccCcccccccccccccCCCCCCCCeeeeccCCCcccCCccCCCCCccccc
Q 047321 710 SSLQIMNCRKLKA-LPDYLLQTIALQKLSIYSCDLLEELPILEDRRTTDIPRLSSLAIWYCPKLKVLPDYLLRTTTLQAG 788 (807)
Q Consensus 710 ~~L~l~~c~~L~~-lp~~l~~l~~L~~L~l~~c~~l~~lP~~~~~~~~~l~~L~~L~i~~c~~l~~lP~~l~~l~~L~~L 788 (807)
+.|++++| .+.. .|..+..+++|+.|++++|.-....| ..+..+++|++|++++|..++.+| .+.++++|+.|
T Consensus 91 ~~L~l~~n-~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~----~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L 164 (197)
T 4ezg_A 91 ERLRIMGK-DVTSDKIPNLSGLTSLTLLDISHSAHDDSIL----TKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSL 164 (197)
T ss_dssp CEEEEECT-TCBGGGSCCCTTCTTCCEEECCSSBCBGGGH----HHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEE
T ss_pred CEEEeECC-ccCcccChhhcCCCCCCEEEecCCccCcHhH----HHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEE
Confidence 99999998 5554 67789999999999999975444455 667899999999999988789998 78999999999
Q ss_pred ccccchhhh
Q 047321 789 EQDYENEKF 797 (807)
Q Consensus 789 ~l~~~~~~~ 797 (807)
++++|++..
T Consensus 165 ~l~~n~i~~ 173 (197)
T 4ezg_A 165 NIQFDGVHD 173 (197)
T ss_dssp ECTTBCCCC
T ss_pred ECCCCCCcC
Confidence 999998864
No 118
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.00 E-value=1.9e-09 Score=107.37 Aligned_cols=132 Identities=16% Similarity=0.216 Sum_probs=105.2
Q ss_pred cceEeccCCcCceeeCcccCCCCCCCCCCCCCCCCCCccccCcccccccccCCCccccchhhhccccCCCCCCcccEEEE
Q 047321 635 LKKLELRDLESVKRVGNEFLGIEESSEDDPSSSSSSPSVIAFPKLKSLEIDGMKELEEWNYRITRKENISIMPRLSSLQI 714 (807)
Q Consensus 635 L~~L~L~~~~~l~~i~~~~~~~~~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~l~~L~~L~l 714 (807)
|+.|+++++ .++.++... +..+++|+.|+|+++ .+..+.. ..+..+++|+.|++
T Consensus 34 l~~L~l~~n-~i~~i~~~~-------------------~~~l~~L~~L~Ls~N-~i~~~~~-----~~~~~l~~L~~L~L 87 (220)
T 2v9t_B 34 ITEIRLEQN-TIKVIPPGA-------------------FSPYKKLRRIDLSNN-QISELAP-----DAFQGLRSLNSLVL 87 (220)
T ss_dssp CCEEECCSS-CCCEECTTS-------------------STTCTTCCEEECCSS-CCCEECT-----TTTTTCSSCCEEEC
T ss_pred CCEEECCCC-cCCCcCHhH-------------------hhCCCCCCEEECCCC-cCCCcCH-----HHhhCCcCCCEEEC
Confidence 999999874 466665432 347899999999985 5666542 45678999999999
Q ss_pred ccCCCCCCCccc-ccCCCCccEEeeccCcccccccccccccCCCCCCCCeeeeccCCCcccCC-ccCCCCCccccccccc
Q 047321 715 MNCRKLKALPDY-LLQTIALQKLSIYSCDLLEELPILEDRRTTDIPRLSSLAIWYCPKLKVLP-DYLLRTTTLQAGEQDY 792 (807)
Q Consensus 715 ~~c~~L~~lp~~-l~~l~~L~~L~l~~c~~l~~lP~~~~~~~~~l~~L~~L~i~~c~~l~~lP-~~l~~l~~L~~L~l~~ 792 (807)
+++ .++.+|.. +..+++|+.|+++++ .+..++ ...+..+++|+.|++++| .++.+| ..+..+++|+.|++++
T Consensus 88 s~N-~l~~l~~~~f~~l~~L~~L~L~~N-~l~~~~---~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~ 161 (220)
T 2v9t_B 88 YGN-KITELPKSLFEGLFSLQLLLLNAN-KINCLR---VDAFQDLHNLNLLSLYDN-KLQTIAKGTFSPLRAIQTMHLAQ 161 (220)
T ss_dssp CSS-CCCCCCTTTTTTCTTCCEEECCSS-CCCCCC---TTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCS
T ss_pred CCC-cCCccCHhHccCCCCCCEEECCCC-CCCEeC---HHHcCCCCCCCEEECCCC-cCCEECHHHHhCCCCCCEEEeCC
Confidence 998 78899876 578999999999996 566664 156788999999999985 567776 5688999999999999
Q ss_pred chhhhh
Q 047321 793 ENEKFS 798 (807)
Q Consensus 793 ~~~~~~ 798 (807)
|++...
T Consensus 162 N~~~c~ 167 (220)
T 2v9t_B 162 NPFICD 167 (220)
T ss_dssp SCEECS
T ss_pred CCcCCC
Confidence 988543
No 119
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=98.99 E-value=8.1e-10 Score=113.39 Aligned_cols=59 Identities=14% Similarity=0.207 Sum_probs=38.1
Q ss_pred ccCcccccccccCCCccccchhhhccccCCCCCCcccEEEEccCCCCCCCcccccCCCCccEEeeccCc
Q 047321 674 IAFPKLKSLEIDGMKELEEWNYRITRKENISIMPRLSSLQIMNCRKLKALPDYLLQTIALQKLSIYSCD 742 (807)
Q Consensus 674 ~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~lp~~l~~l~~L~~L~l~~c~ 742 (807)
..+++|+.|+++++ .+..++. +..+++|+.|++++| .+..+ ..+..+++|+.|++++++
T Consensus 125 ~~l~~L~~L~Ls~N-~i~~~~~-------l~~l~~L~~L~L~~N-~i~~~-~~l~~l~~L~~L~l~~N~ 183 (263)
T 1xeu_A 125 IHLKNLEILSIRNN-KLKSIVM-------LGFLSKLEVLDLHGN-EITNT-GGLTRLKKVNWIDLTGQK 183 (263)
T ss_dssp TTCTTCCEEECTTS-CCCBCGG-------GGGCTTCCEEECTTS-CCCBC-TTSTTCCCCCEEEEEEEE
T ss_pred cCcccccEEECCCC-cCCCChH-------HccCCCCCEEECCCC-cCcch-HHhccCCCCCEEeCCCCc
Confidence 36677777777764 4554432 345677777777777 56666 456677777777777753
No 120
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=98.98 E-value=6.6e-10 Score=114.07 Aligned_cols=149 Identities=17% Similarity=0.143 Sum_probs=112.7
Q ss_pred ccCCCCCCeEEEEeeccCCCcchhhhhchhhHHHHHHhhcCCCCCCCCCCCcc-cceEeccCCcCceeeCcccCCCCCCC
Q 047321 582 LYNQQNLLRLRLRFGRVVDGEDEERRRKNEKDKQLLEALQPPLSHLPPLGKLP-LKKLELRDLESVKRVGNEFLGIEESS 660 (807)
Q Consensus 582 l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~l~p~~~~lp~l~~L~-L~~L~L~~~~~l~~i~~~~~~~~~l~ 660 (807)
+..+++|+.|++++|.+ ..+|.++.++ |+.|+++++. ++.++.
T Consensus 37 ~~~l~~L~~L~l~~n~i--------------------------~~l~~l~~l~~L~~L~L~~N~-i~~~~~--------- 80 (263)
T 1xeu_A 37 QKELSGVQNFNGDNSNI--------------------------QSLAGMQFFTNLKELHLSHNQ-ISDLSP--------- 80 (263)
T ss_dssp HHHHTTCSEEECTTSCC--------------------------CCCTTGGGCTTCCEEECCSSC-CCCCGG---------
T ss_pred hhhcCcCcEEECcCCCc--------------------------ccchHHhhCCCCCEEECCCCc-cCCChh---------
Confidence 44567899999988875 4566778888 9999998754 554443
Q ss_pred CCCCCCCCCCCccccCcccccccccCCCccccchhhhccccCCCCCCcccEEEEccCCCCCCCcccccCCCCccEEeecc
Q 047321 661 EDDPSSSSSSPSVIAFPKLKSLEIDGMKELEEWNYRITRKENISIMPRLSSLQIMNCRKLKALPDYLLQTIALQKLSIYS 740 (807)
Q Consensus 661 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~lp~~l~~l~~L~~L~l~~ 740 (807)
+..+++|+.|+++++ .+..++. +.. ++|+.|++++| .++.+| .+..+++|+.|++++
T Consensus 81 ------------l~~l~~L~~L~L~~N-~l~~l~~-------~~~-~~L~~L~L~~N-~l~~~~-~l~~l~~L~~L~Ls~ 137 (263)
T 1xeu_A 81 ------------LKDLTKLEELSVNRN-RLKNLNG-------IPS-ACLSRLFLDNN-ELRDTD-SLIHLKNLEILSIRN 137 (263)
T ss_dssp ------------GTTCSSCCEEECCSS-CCSCCTT-------CCC-SSCCEEECCSS-CCSBSG-GGTTCTTCCEEECTT
T ss_pred ------------hccCCCCCEEECCCC-ccCCcCc-------ccc-CcccEEEccCC-ccCCCh-hhcCcccccEEECCC
Confidence 247888999999885 5666553 222 88999999988 787776 578889999999988
Q ss_pred CcccccccccccccCCCCCCCCeeeeccCCCcccCCccCCCCCcccccccccchhhh
Q 047321 741 CDLLEELPILEDRRTTDIPRLSSLAIWYCPKLKVLPDYLLRTTTLQAGEQDYENEKF 797 (807)
Q Consensus 741 c~~l~~lP~~~~~~~~~l~~L~~L~i~~c~~l~~lP~~l~~l~~L~~L~l~~~~~~~ 797 (807)
| .+..+| .+..+++|+.|++++| .+..+ ..+..+++|+.|++++|++..
T Consensus 138 N-~i~~~~-----~l~~l~~L~~L~L~~N-~i~~~-~~l~~l~~L~~L~l~~N~~~~ 186 (263)
T 1xeu_A 138 N-KLKSIV-----MLGFLSKLEVLDLHGN-EITNT-GGLTRLKKVNWIDLTGQKCVN 186 (263)
T ss_dssp S-CCCBCG-----GGGGCTTCCEEECTTS-CCCBC-TTSTTCCCCCEEEEEEEEEEC
T ss_pred C-cCCCCh-----HHccCCCCCEEECCCC-cCcch-HHhccCCCCCEEeCCCCcccC
Confidence 5 577775 4567889999999875 45666 577888899999999887753
No 121
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=98.98 E-value=1.9e-09 Score=108.17 Aligned_cols=132 Identities=20% Similarity=0.229 Sum_probs=106.8
Q ss_pred c-cceEeccCCcCceeeCcccCCCCCCCCCCCCCCCCCCccccCcccccccccCCCccccchhhhccccCCCCCCcccEE
Q 047321 634 P-LKKLELRDLESVKRVGNEFLGIEESSEDDPSSSSSSPSVIAFPKLKSLEIDGMKELEEWNYRITRKENISIMPRLSSL 712 (807)
Q Consensus 634 ~-L~~L~L~~~~~l~~i~~~~~~~~~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~l~~L~~L 712 (807)
+ |++|+|+++. +..+... .+..+++|+.|+|+++ .+..++. ..+..+++|+.|
T Consensus 40 ~~L~~L~Ls~n~-i~~~~~~-------------------~~~~l~~L~~L~L~~N-~l~~i~~-----~~~~~l~~L~~L 93 (229)
T 3e6j_A 40 TNAQILYLHDNQ-ITKLEPG-------------------VFDSLINLKELYLGSN-QLGALPV-----GVFDSLTQLTVL 93 (229)
T ss_dssp TTCSEEECCSSC-CCCCCTT-------------------TTTTCTTCCEEECCSS-CCCCCCT-----TTTTTCTTCCEE
T ss_pred CCCCEEEcCCCc-cCccCHH-------------------HhhCccCCcEEECCCC-CCCCcCh-----hhcccCCCcCEE
Confidence 5 9999998854 5544322 1347899999999985 5776664 345689999999
Q ss_pred EEccCCCCCCCccc-ccCCCCccEEeeccCcccccccccccccCCCCCCCCeeeeccCCCcccCC-ccCCCCCccccccc
Q 047321 713 QIMNCRKLKALPDY-LLQTIALQKLSIYSCDLLEELPILEDRRTTDIPRLSSLAIWYCPKLKVLP-DYLLRTTTLQAGEQ 790 (807)
Q Consensus 713 ~l~~c~~L~~lp~~-l~~l~~L~~L~l~~c~~l~~lP~~~~~~~~~l~~L~~L~i~~c~~l~~lP-~~l~~l~~L~~L~l 790 (807)
++++| +++.+|.. +..+++|+.|+++++ .+..+| ..+..+++|++|++++| .++.+| ..+..+++|+.|++
T Consensus 94 ~Ls~N-~l~~l~~~~~~~l~~L~~L~Ls~N-~l~~lp----~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l 166 (229)
T 3e6j_A 94 DLGTN-QLTVLPSAVFDRLVHLKELFMCCN-KLTELP----RGIERLTHLTHLALDQN-QLKSIPHGAFDRLSSLTHAYL 166 (229)
T ss_dssp ECCSS-CCCCCCTTTTTTCTTCCEEECCSS-CCCSCC----TTGGGCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEEC
T ss_pred ECCCC-cCCccChhHhCcchhhCeEeccCC-cccccC----cccccCCCCCEEECCCC-cCCccCHHHHhCCCCCCEEEe
Confidence 99999 78888765 578999999999985 688998 77889999999999985 677887 56889999999999
Q ss_pred ccchhhhh
Q 047321 791 DYENEKFS 798 (807)
Q Consensus 791 ~~~~~~~~ 798 (807)
++|++...
T Consensus 167 ~~N~~~c~ 174 (229)
T 3e6j_A 167 FGNPWDCE 174 (229)
T ss_dssp TTSCBCTT
T ss_pred eCCCccCC
Confidence 99988644
No 122
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=98.95 E-value=3.1e-09 Score=104.84 Aligned_cols=152 Identities=17% Similarity=0.191 Sum_probs=107.6
Q ss_pred CCCCCeEEEEeeccCCCcchhhhhchhhHHHHHHhhcCCCCCCCC--CCCcc-cceEeccCCcCceeeCcccCCCCCCCC
Q 047321 585 QQNLLRLRLRFGRVVDGEDEERRRKNEKDKQLLEALQPPLSHLPP--LGKLP-LKKLELRDLESVKRVGNEFLGIEESSE 661 (807)
Q Consensus 585 l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~l~p~~~~lp~--l~~L~-L~~L~L~~~~~l~~i~~~~~~~~~l~~ 661 (807)
.++|+.|++++|.+ ..+|. ++.++ |++|+++++ .++.++...
T Consensus 27 ~~~l~~L~l~~n~l--------------------------~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~-------- 71 (208)
T 2o6s_A 27 PAQTTYLDLETNSL--------------------------KSLPNGVFDELTSLTQLYLGGN-KLQSLPNGV-------- 71 (208)
T ss_dssp CTTCSEEECCSSCC--------------------------CCCCTTTTTTCTTCSEEECCSS-CCCCCCTTT--------
T ss_pred CCCCcEEEcCCCcc--------------------------CcCChhhhcccccCcEEECCCC-ccCccChhh--------
Confidence 35889999998875 33443 67888 999999874 455554321
Q ss_pred CCCCCCCCCCccccCcccccccccCCCccccchhhhccccCCCCCCcccEEEEccCCCCCCCccc-ccCCCCccEEeecc
Q 047321 662 DDPSSSSSSPSVIAFPKLKSLEIDGMKELEEWNYRITRKENISIMPRLSSLQIMNCRKLKALPDY-LLQTIALQKLSIYS 740 (807)
Q Consensus 662 ~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~lp~~-l~~l~~L~~L~l~~ 740 (807)
+..+++|+.|+++++ .+..++. ..+..+++|+.|+++++ .++.+|.. +..+++|+.|++++
T Consensus 72 -----------~~~l~~L~~L~Ls~n-~l~~~~~-----~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~ 133 (208)
T 2o6s_A 72 -----------FNKLTSLTYLNLSTN-QLQSLPN-----GVFDKLTQLKELALNTN-QLQSLPDGVFDKLTQLKDLRLYQ 133 (208)
T ss_dssp -----------TTTCTTCCEEECCSS-CCCCCCT-----TTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCS
T ss_pred -----------cCCCCCcCEEECCCC-cCCccCH-----hHhcCccCCCEEEcCCC-cCcccCHhHhccCCcCCEEECCC
Confidence 246788999999875 5665553 23567889999999888 67777764 67888999999988
Q ss_pred CcccccccccccccCCCCCCCCeeeeccCCCcccCCccCCCCCcccccccccchhhhhhh
Q 047321 741 CDLLEELPILEDRRTTDIPRLSSLAIWYCPKLKVLPDYLLRTTTLQAGEQDYENEKFSQR 800 (807)
Q Consensus 741 c~~l~~lP~~~~~~~~~l~~L~~L~i~~c~~l~~lP~~l~~l~~L~~L~l~~~~~~~~~~ 800 (807)
+ .+..+|. ..+..+++|++|++++|+.. ..++.|+.|+++.|.+....|
T Consensus 134 N-~l~~~~~---~~~~~l~~L~~L~l~~N~~~-------~~~~~l~~L~~~~n~~~g~ip 182 (208)
T 2o6s_A 134 N-QLKSVPD---GVFDRLTSLQYIWLHDNPWD-------CTCPGIRYLSEWINKHSGVVR 182 (208)
T ss_dssp S-CCSCCCT---TTTTTCTTCCEEECCSCCBC-------CCTTTTHHHHHHHHHCTTTBB
T ss_pred C-ccceeCH---HHhccCCCccEEEecCCCee-------cCCCCHHHHHHHHHhCCceee
Confidence 5 5666661 33677888999998886433 345567777777777766554
No 123
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=98.92 E-value=3.7e-11 Score=139.28 Aligned_cols=86 Identities=15% Similarity=0.060 Sum_probs=49.6
Q ss_pred CCCcccEEEEccCCCCCC-Cccccc-CCCCccEEeeccCcccccccccccccC-CCCCCCCeeeeccCCCccc-CCccCC
Q 047321 705 IMPRLSSLQIMNCRKLKA-LPDYLL-QTIALQKLSIYSCDLLEELPILEDRRT-TDIPRLSSLAIWYCPKLKV-LPDYLL 780 (807)
Q Consensus 705 ~l~~L~~L~l~~c~~L~~-lp~~l~-~l~~L~~L~l~~c~~l~~lP~~~~~~~-~~l~~L~~L~i~~c~~l~~-lP~~l~ 780 (807)
.+++|+.|++++ .+.. .+..+. .+++|+.|++++|......+ ..+ ..+++|+.|++++|+.... ++..+.
T Consensus 430 ~~~~L~~L~L~~--~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~----~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~ 503 (594)
T 2p1m_B 430 HCKDLRRLSLSG--LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGM----HHVLSGCDSLRKLEIRDCPFGDKALLANAS 503 (594)
T ss_dssp HCTTCCEEECCS--SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHH----HHHHHHCTTCCEEEEESCSCCHHHHHHTGG
T ss_pred hCCCccEEeecC--cccHHHHHHHHHhchhccEeeccCCCCcHHHH----HHHHhcCCCcCEEECcCCCCcHHHHHHHHH
Confidence 455666666643 2221 111222 26677777777764211111 111 4578899999998876222 223445
Q ss_pred CCCcccccccccchhh
Q 047321 781 RTTTLQAGEQDYENEK 796 (807)
Q Consensus 781 ~l~~L~~L~l~~~~~~ 796 (807)
.+++|+.|++++|++.
T Consensus 504 ~l~~L~~L~l~~~~~~ 519 (594)
T 2p1m_B 504 KLETMRSLWMSSCSVS 519 (594)
T ss_dssp GGGGSSEEEEESSCCB
T ss_pred hCCCCCEEeeeCCCCC
Confidence 6889999999999873
No 124
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=98.87 E-value=4.5e-09 Score=99.80 Aligned_cols=129 Identities=17% Similarity=0.259 Sum_probs=102.6
Q ss_pred c-cceEeccCCcCce--eeCcccCCCCCCCCCCCCCCCCCCccccCcccccccccCCCccccchhhhccccCCCCCCccc
Q 047321 634 P-LKKLELRDLESVK--RVGNEFLGIEESSEDDPSSSSSSPSVIAFPKLKSLEIDGMKELEEWNYRITRKENISIMPRLS 710 (807)
Q Consensus 634 ~-L~~L~L~~~~~l~--~i~~~~~~~~~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~l~~L~ 710 (807)
+ |+.|+++++. +. .++.. +..+++|+.|+++++. +..+ . .+..+++|+
T Consensus 24 ~~L~~L~l~~n~-l~~~~i~~~--------------------~~~l~~L~~L~l~~n~-l~~~-~------~~~~l~~L~ 74 (168)
T 2ell_A 24 AAVRELVLDNCK-SNDGKIEGL--------------------TAEFVNLEFLSLINVG-LISV-S------NLPKLPKLK 74 (168)
T ss_dssp TSCSEEECCSCB-CBTTBCSSC--------------------CGGGGGCCEEEEESSC-CCCC-S------SCCCCSSCC
T ss_pred ccCCEEECCCCC-CChhhHHHH--------------------HHhCCCCCEEeCcCCC-CCCh-h------hhccCCCCC
Confidence 5 9999999865 44 44432 3589999999999964 6655 2 466899999
Q ss_pred EEEEccCCCCCC-CcccccCCCCccEEeeccCcccccccccccccCCCCCCCCeeeeccCCCcccCCc----cCCCCCcc
Q 047321 711 SLQIMNCRKLKA-LPDYLLQTIALQKLSIYSCDLLEELPILEDRRTTDIPRLSSLAIWYCPKLKVLPD----YLLRTTTL 785 (807)
Q Consensus 711 ~L~l~~c~~L~~-lp~~l~~l~~L~~L~l~~c~~l~~lP~~~~~~~~~l~~L~~L~i~~c~~l~~lP~----~l~~l~~L 785 (807)
.|++++| .+.. +|..+..+++|+.|++++| .+..+|.+ ..+..+++|++|++++| .+..+|. .+..+++|
T Consensus 75 ~L~Ls~N-~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~--~~l~~l~~L~~L~l~~N-~l~~~~~~~~~~~~~l~~L 149 (168)
T 2ell_A 75 KLELSEN-RIFGGLDMLAEKLPNLTHLNLSGN-KLKDISTL--EPLKKLECLKSLDLFNC-EVTNLNDYRESVFKLLPQL 149 (168)
T ss_dssp EEEEESC-CCCSCCCHHHHHCTTCCEEECBSS-SCCSSGGG--GGGSSCSCCCEEECCSS-GGGTSTTHHHHHHTTCSSC
T ss_pred EEECcCC-cCchHHHHHHhhCCCCCEEeccCC-ccCcchhH--HHHhcCCCCCEEEeeCC-cCcchHHHHHHHHHhCccC
Confidence 9999999 5666 7777777999999999997 67776511 35678999999999986 4677776 78999999
Q ss_pred cccccccchhh
Q 047321 786 QAGEQDYENEK 796 (807)
Q Consensus 786 ~~L~l~~~~~~ 796 (807)
+.|++++|.+.
T Consensus 150 ~~L~l~~n~~~ 160 (168)
T 2ell_A 150 TYLDGYDREDQ 160 (168)
T ss_dssp CEETTEETTSC
T ss_pred cEecCCCCChh
Confidence 99999999764
No 125
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=98.87 E-value=4.8e-09 Score=102.01 Aligned_cols=117 Identities=15% Similarity=0.173 Sum_probs=92.3
Q ss_pred CcccccccccCCCccccchhhhccccCCCCCCcccEEEEccCCCCCCC-cccccCCCCccEEeeccCccccccccccccc
Q 047321 676 FPKLKSLEIDGMKELEEWNYRITRKENISIMPRLSSLQIMNCRKLKAL-PDYLLQTIALQKLSIYSCDLLEELPILEDRR 754 (807)
Q Consensus 676 l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~l-p~~l~~l~~L~~L~l~~c~~l~~lP~~~~~~ 754 (807)
+++|+.|+++++ .+..++. ...+..+++|+.|+++++ .++.+ |..+..+++|++|+++++ .+..+|. ..
T Consensus 28 ~~~l~~L~l~~n-~i~~~~~----~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~---~~ 97 (192)
T 1w8a_A 28 PLHTTELLLNDN-ELGRISS----DGLFGRLPHLVKLELKRN-QLTGIEPNAFEGASHIQELQLGEN-KIKEISN---KM 97 (192)
T ss_dssp CTTCSEEECCSC-CCCSBCC----SCSGGGCTTCCEEECCSS-CCCCBCTTTTTTCTTCCEEECCSC-CCCEECS---SS
T ss_pred CCCCCEEECCCC-cCCccCC----ccccccCCCCCEEECCCC-CCCCcCHhHcCCcccCCEEECCCC-cCCccCH---HH
Confidence 348999999985 6666653 123568999999999999 66666 778999999999999996 5666651 45
Q ss_pred CCCCCCCCeeeeccCCCcccCCccCCCCCcccccccccchhhhhhhhh
Q 047321 755 TTDIPRLSSLAIWYCPKLKVLPDYLLRTTTLQAGEQDYENEKFSQRIA 802 (807)
Q Consensus 755 ~~~l~~L~~L~i~~c~~l~~lP~~l~~l~~L~~L~l~~~~~~~~~~~~ 802 (807)
+..+++|++|+++++..-...|..+..+++|+.|++++|++...-++.
T Consensus 98 ~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~l~ 145 (192)
T 1w8a_A 98 FLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHLA 145 (192)
T ss_dssp STTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGGGH
T ss_pred hcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcCcch
Confidence 778999999999986544455788999999999999999987655443
No 126
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=98.87 E-value=1.5e-10 Score=133.98 Aligned_cols=39 Identities=8% Similarity=-0.051 Sum_probs=26.0
Q ss_pred CCCCCeeeeccCCCcccCCccC-CCCCcccccccccchhh
Q 047321 758 IPRLSSLAIWYCPKLKVLPDYL-LRTTTLQAGEQDYENEK 796 (807)
Q Consensus 758 l~~L~~L~i~~c~~l~~lP~~l-~~l~~L~~L~l~~~~~~ 796 (807)
+++|+.|++++|.....-+..+ ..+++|+.|++++|++.
T Consensus 455 ~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~ 494 (594)
T 2p1m_B 455 AKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFG 494 (594)
T ss_dssp CTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCC
T ss_pred chhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCc
Confidence 6778888887765322222222 56788999999999873
No 127
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=98.85 E-value=3.9e-09 Score=113.80 Aligned_cols=154 Identities=20% Similarity=0.229 Sum_probs=116.6
Q ss_pred CCCCeEEEEeeccCCCcchhhhhchhhHHHHHHhhcCCCCCCCC--CC-Ccc-cceEeccCCcCceeeCcccCCCCCCCC
Q 047321 586 QNLLRLRLRFGRVVDGEDEERRRKNEKDKQLLEALQPPLSHLPP--LG-KLP-LKKLELRDLESVKRVGNEFLGIEESSE 661 (807)
Q Consensus 586 ~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~l~p~~~~lp~--l~-~L~-L~~L~L~~~~~l~~i~~~~~~~~~l~~ 661 (807)
..++.|+|++|.+ ..++. +. .++ |+.|+|+++ .++.++...
T Consensus 39 ~~l~~L~Ls~N~l--------------------------~~l~~~~~~~~l~~L~~L~L~~N-~i~~i~~~~-------- 83 (361)
T 2xot_A 39 SYTALLDLSHNNL--------------------------SRLRAEWTPTRLTNLHSLLLSHN-HLNFISSEA-------- 83 (361)
T ss_dssp TTCSEEECCSSCC--------------------------CEECTTSSSSCCTTCCEEECCSS-CCCEECTTT--------
T ss_pred CCCCEEECCCCCC--------------------------CccChhhhhhcccccCEEECCCC-cCCccChhh--------
Confidence 3688899998875 22332 44 788 999999874 466665431
Q ss_pred CCCCCCCCCCccccCcccccccccCCCccccchhhhccccCCCCCCcccEEEEccCCCCCCC-cccccCCCCccEEeecc
Q 047321 662 DDPSSSSSSPSVIAFPKLKSLEIDGMKELEEWNYRITRKENISIMPRLSSLQIMNCRKLKAL-PDYLLQTIALQKLSIYS 740 (807)
Q Consensus 662 ~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~l-p~~l~~l~~L~~L~l~~ 740 (807)
+..+++|+.|+|+++ .+..++. ..+..+++|+.|++++| .+..+ |..+..+++|+.|+|++
T Consensus 84 -----------~~~l~~L~~L~Ls~N-~l~~~~~-----~~~~~l~~L~~L~L~~N-~i~~~~~~~~~~l~~L~~L~L~~ 145 (361)
T 2xot_A 84 -----------FVPVPNLRYLDLSSN-HLHTLDE-----FLFSDLQALEVLLLYNN-HIVVVDRNAFEDMAQLQKLYLSQ 145 (361)
T ss_dssp -----------TTTCTTCCEEECCSS-CCCEECT-----TTTTTCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCS
T ss_pred -----------ccCCCCCCEEECCCC-cCCcCCH-----HHhCCCcCCCEEECCCC-cccEECHHHhCCcccCCEEECCC
Confidence 347899999999985 6777654 34678999999999999 67666 66788999999999999
Q ss_pred CcccccccccccccC----CCCCCCCeeeeccCCCcccCC-ccCCCCCc--ccccccccchhhhh
Q 047321 741 CDLLEELPILEDRRT----TDIPRLSSLAIWYCPKLKVLP-DYLLRTTT--LQAGEQDYENEKFS 798 (807)
Q Consensus 741 c~~l~~lP~~~~~~~----~~l~~L~~L~i~~c~~l~~lP-~~l~~l~~--L~~L~l~~~~~~~~ 798 (807)
+ .+..+| ... ..+++|+.|++++ +.++.+| ..+..++. |+.|++++|++...
T Consensus 146 N-~l~~l~----~~~~~~~~~l~~L~~L~L~~-N~l~~l~~~~~~~l~~~~l~~l~l~~N~~~C~ 204 (361)
T 2xot_A 146 N-QISRFP----VELIKDGNKLPKLMLLDLSS-NKLKKLPLTDLQKLPAWVKNGLYLHNNPLECD 204 (361)
T ss_dssp S-CCCSCC----GGGTC----CTTCCEEECCS-SCCCCCCHHHHHHSCHHHHTTEECCSSCEECC
T ss_pred C-cCCeeC----HHHhcCcccCCcCCEEECCC-CCCCccCHHHhhhccHhhcceEEecCCCccCC
Confidence 5 688887 332 5789999999998 5678888 56677776 48899999887643
No 128
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=98.83 E-value=9.3e-09 Score=109.10 Aligned_cols=264 Identities=14% Similarity=0.072 Sum_probs=142.7
Q ss_pred CccccccchHHHHHHHHhCCCCCCCCCceEEEEEccCCChHHHHHHHHHcCcccccccceEEEEEeCCCCCHHHHHHHHH
Q 047321 104 GGVCGRVDEKNELLSKLLCGSSEQQKGLDVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSNTFEEISVAKAII 183 (807)
Q Consensus 104 ~~~vGR~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 183 (807)
.+++|++..++.+...+...... ......+.|+|++|+|||++|+.+++. .... .++++.........
T Consensus 12 ~~~ig~~~~~~~l~~~l~~~~~~-~~~~~~vll~G~~GtGKT~la~~i~~~--~~~~---~~~~~~~~~~~~~~------ 79 (324)
T 1hqc_A 12 DEYIGQERLKQKLRVYLEAAKAR-KEPLEHLLLFGPPGLGKTTLAHVIAHE--LGVN---LRVTSGPAIEKPGD------ 79 (324)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHH-CSCCCCCEEECCTTCCCHHHHHHHHHH--HTCC---EEEECTTTCCSHHH------
T ss_pred HHhhCHHHHHHHHHHHHHHHHcc-CCCCCcEEEECCCCCCHHHHHHHHHHH--hCCC---EEEEeccccCChHH------
Confidence 46999999988888877531100 113457889999999999999999873 2222 23443332222111
Q ss_pred HHcCCCCCCCccHHHHHHHHHHHHh---CCceEEEEeCCCCCCccChHHHHHhhcCCC------------------CCcE
Q 047321 184 EGLGVSAFGLSEFESLMKQIQEYIT---GKKIFLVLDDVWDGDYKKWDPFFSCLKNGH------------------HESK 242 (807)
Q Consensus 184 ~~l~~~~~~~~~~~~~~~~l~~~l~---~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~------------------~gs~ 242 (807)
+...+. .++.+|++||+..-.......+...+.... ++.+
T Consensus 80 -------------------l~~~l~~~~~~~~~l~lDEi~~l~~~~~~~L~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~ 140 (324)
T 1hqc_A 80 -------------------LAAILANSLEEGDILFIDEIHRLSRQAEEHLYPAMEDFVMDIVIGQGPAARTIRLELPRFT 140 (324)
T ss_dssp -------------------HHHHHTTTCCTTCEEEETTTTSCCHHHHHHHHHHHHHSEEEECCSSSSSCCCEEEECCCCE
T ss_pred -------------------HHHHHHHhccCCCEEEEECCcccccchHHHHHHHHHhhhhHHhccccccccccccCCCCEE
Confidence 111222 356799999996654444455555554321 2345
Q ss_pred EEEEcCCHH-HHHHhCC--CceEeCCCCChhhHHHHHHHHHhccCCccCccchHHHHHHHHHHcCCCHHHHHHHHHHhhc
Q 047321 243 ILITTHDRS-VALQLGS--IDIIPVKELGEGECWLLFKQIAFLRRSFEDCEKLEPIGRKIASKCKGLPLAAKVIGNLLRS 319 (807)
Q Consensus 243 IliTTR~~~-v~~~~~~--~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~~~~I~~~c~glPLai~~~~~~l~~ 319 (807)
+|.||.... +...+.. ...+.+.+++.++...++.+.+...+. .--.+....+++.++|.|..+..+...+..
T Consensus 141 ~i~~t~~~~~~~~~l~~R~~~~i~l~~~~~~e~~~~l~~~~~~~~~----~~~~~~~~~l~~~~~G~~r~l~~~l~~~~~ 216 (324)
T 1hqc_A 141 LIGATTRPGLITAPLLSRFGIVEHLEYYTPEELAQGVMRDARLLGV----RITEEAALEIGRRSRGTMRVAKRLFRRVRD 216 (324)
T ss_dssp EEEEESCCSSCSCSTTTTCSCEEECCCCCHHHHHHHHHHHHHTTTC----CCCHHHHHHHHHHSCSCHHHHHHHHHHHTT
T ss_pred EEEeCCCcccCCHHHHhcccEEEecCCCCHHHHHHHHHHHHHhcCC----CCCHHHHHHHHHHccCCHHHHHHHHHHHHH
Confidence 666665432 1111111 247899999999999999887743322 112456788999999999888766655421
Q ss_pred C--------CCHHHHHHHHhccccccccCCCCchhhHHhcccCCCCccchhhhhhhhc-cCCCc----------ceechh
Q 047321 320 K--------NTAKEWHIILDSEMWKVQEIGQGILAPLLLSYNDLPSNSMVKRCFSYCA-VFPKD----------YNMNKR 380 (807)
Q Consensus 320 ~--------~~~~~w~~~~~~~~~~~~~~~~~i~~~l~lsy~~L~~~~~~k~cfl~~s-~fp~~----------~~i~~~ 380 (807)
. -+.+....+.... ...+..++. ..+..+..+. .|..+ ..+++.
T Consensus 217 ~a~~~~~~~i~~~~~~~~~~~~---------------~~~~~~l~~--~e~~~i~~~~~~~~g~~~~~~~~a~~lgi~~~ 279 (324)
T 1hqc_A 217 FAQVAGEEVITRERALEALAAL---------------GLDELGLEK--RDREILEVLILRFGGGPVGLATLATALSEDPG 279 (324)
T ss_dssp TSTTTSCSCCCHHHHHHHHHHH---------------TCCTTCCCH--HHHHHHHHHHHHSCSSCCCHHHHHHHTTSCHH
T ss_pred HHHHhcCCCCCHHHHHHHHHHh---------------cccccCCCH--HHHHHHHHHHHHhcCCCchHHHHHHHhCCCHH
Confidence 1 1333444333321 111222222 2233332221 12111 013333
Q ss_pred HHHH----HHHhcCCCCCCC-CchHHHHHHHHHH-HHhhcCCcce
Q 047321 381 ELIN----LWMTQGYLNADE-DEEMEMIGEEYFN-ILATRSFFQE 419 (807)
Q Consensus 381 ~li~----~W~aeg~i~~~~-~~~~e~~~~~~~~-~L~~rsll~~ 419 (807)
.+.+ +-+..|++.... +....+.|.+||+ ++.+|+|||+
T Consensus 280 tl~~~l~~~~i~~~li~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 324 (324)
T 1hqc_A 280 TLEEVHEPYLIRQGLLKRTPRGRVPTELAYRHLGYPPPVGPLLEP 324 (324)
T ss_dssp HHHHHTHHHHHHTTSEEEETTEEEECHHHHHHTTCCCCC------
T ss_pred HHHHHHhHHHHHhcchhcCCccceecHHHHHHHhcCCCCCCCCCC
Confidence 3322 245578875433 3456677888887 8888888875
No 129
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=98.83 E-value=1.8e-08 Score=99.37 Aligned_cols=135 Identities=21% Similarity=0.244 Sum_probs=105.0
Q ss_pred cc-cceEeccCCcCceeeCcccCCCCCCCCCCCCCCCCCCccccCcccccccccCCCccccchhhhccccCCCCCCcccE
Q 047321 633 LP-LKKLELRDLESVKRVGNEFLGIEESSEDDPSSSSSSPSVIAFPKLKSLEIDGMKELEEWNYRITRKENISIMPRLSS 711 (807)
Q Consensus 633 L~-L~~L~L~~~~~l~~i~~~~~~~~~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~l~~L~~ 711 (807)
.+ |++|+++++. ++.++... +..+++|+.|+++++ .+..++. ..+..+++|++
T Consensus 27 ~~~l~~L~l~~n~-l~~~~~~~-------------------~~~l~~L~~L~l~~n-~l~~~~~-----~~~~~l~~L~~ 80 (208)
T 2o6s_A 27 PAQTTYLDLETNS-LKSLPNGV-------------------FDELTSLTQLYLGGN-KLQSLPN-----GVFNKLTSLTY 80 (208)
T ss_dssp CTTCSEEECCSSC-CCCCCTTT-------------------TTTCTTCSEEECCSS-CCCCCCT-----TTTTTCTTCCE
T ss_pred CCCCcEEEcCCCc-cCcCChhh-------------------hcccccCcEEECCCC-ccCccCh-----hhcCCCCCcCE
Confidence 45 9999998854 55544321 347899999999985 6766654 34567999999
Q ss_pred EEEccCCCCCCCccc-ccCCCCccEEeeccCcccccccccccccCCCCCCCCeeeeccCCCcccCCc-cCCCCCcccccc
Q 047321 712 LQIMNCRKLKALPDY-LLQTIALQKLSIYSCDLLEELPILEDRRTTDIPRLSSLAIWYCPKLKVLPD-YLLRTTTLQAGE 789 (807)
Q Consensus 712 L~l~~c~~L~~lp~~-l~~l~~L~~L~l~~c~~l~~lP~~~~~~~~~l~~L~~L~i~~c~~l~~lP~-~l~~l~~L~~L~ 789 (807)
|++++| .+..+|.. +..+++|++|+++++ .+..+|. ..+..+++|++|++++| .++.+|. .+..+++|+.|+
T Consensus 81 L~Ls~n-~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~---~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~l~~L~~L~ 154 (208)
T 2o6s_A 81 LNLSTN-QLQSLPNGVFDKLTQLKELALNTN-QLQSLPD---GVFDKLTQLKDLRLYQN-QLKSVPDGVFDRLTSLQYIW 154 (208)
T ss_dssp EECCSS-CCCCCCTTTTTTCTTCCEEECCSS-CCCCCCT---TTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEE
T ss_pred EECCCC-cCCccCHhHhcCccCCCEEEcCCC-cCcccCH---hHhccCCcCCEEECCCC-ccceeCHHHhccCCCccEEE
Confidence 999999 78888765 688999999999996 5777761 34678999999999985 5677775 478999999999
Q ss_pred cccchhhhhh
Q 047321 790 QDYENEKFSQ 799 (807)
Q Consensus 790 l~~~~~~~~~ 799 (807)
+++|++....
T Consensus 155 l~~N~~~~~~ 164 (208)
T 2o6s_A 155 LHDNPWDCTC 164 (208)
T ss_dssp CCSCCBCCCT
T ss_pred ecCCCeecCC
Confidence 9999876543
No 130
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=98.82 E-value=2.8e-10 Score=123.01 Aligned_cols=243 Identities=14% Similarity=0.056 Sum_probs=141.4
Q ss_pred CcceEEEEEeeccCCCCc-----cccCCCC-ceeEEEeCCCCCCCCCCCCccc-cccccCc-----ccceeeecccc-CC
Q 047321 466 GDKVRHLGLKFEEGASFP-----MSIHGLN-RLRTLLIYDQSPYNPSLSSSIL-PELFNKL-----ACLRALVIRQS-LR 532 (807)
Q Consensus 466 ~~~~r~L~l~~~~~~~~~-----~~~~~l~-~Lr~L~l~~~~~~~l~~~i~~L-P~~i~~L-----~~L~~LdL~~~-L~ 532 (807)
+..+++|++++|.+...+ ..+..++ +|++|++++| .+... |..+..+ ++|++|+|+.+ +.
T Consensus 21 ~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N-------~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~ 93 (362)
T 3goz_A 21 PHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGN-------SLGFKNSDELVQILAAIPANVTSLNLSGNFLS 93 (362)
T ss_dssp CTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSS-------CGGGSCHHHHHHHHHTSCTTCCEEECCSSCGG
T ss_pred CCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCC-------CCCHHHHHHHHHHHhccCCCccEEECcCCcCC
Confidence 566999999999887644 5677888 9999999998 56554 5566665 89999999722 11
Q ss_pred ccCeeEecCccCCCcccccc-ccccc-cccCcccccCCCCCCChhHHHHhhccC-CCCCCeEEEEeeccCCCcchhhhhc
Q 047321 533 TLEKFVVGGGVDGSNTCRLE-SLKNL-QLLRECGIEGLGNVSHLDEAERLQLYN-QQNLLRLRLRFGRVVDGEDEERRRK 609 (807)
Q Consensus 533 ~L~~l~~~~~~~~~~~~~i~-~L~~L-~~L~~L~i~~l~~~~~~~~~~~~~l~~-l~~L~~L~L~~~~~~~~~~~~~~~~ 609 (807)
... ...+. .+..+ .+|+.|.+++..--..........+.. .++|++|+|++|.+.+.
T Consensus 94 ~~~------------~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~-------- 153 (362)
T 3goz_A 94 YKS------------SDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIK-------- 153 (362)
T ss_dssp GSC------------HHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGS--------
T ss_pred hHH------------HHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHH--------
Confidence 100 11111 13333 567776666532111112333344555 36999999998874211
Q ss_pred hhhHHHHHHhhcCCCCCCCCCCCc-c-cceEeccCCcCceeeCcccCCCCCCCCCCCCCCCCCCccccC-cccccccccC
Q 047321 610 NEKDKQLLEALQPPLSHLPPLGKL-P-LKKLELRDLESVKRVGNEFLGIEESSEDDPSSSSSSPSVIAF-PKLKSLEIDG 686 (807)
Q Consensus 610 ~~~~~~~l~~l~p~~~~lp~l~~L-~-L~~L~L~~~~~l~~i~~~~~~~~~l~~~~~~~~~~~~~~~~l-~~L~~L~l~~ 686 (807)
....+.+.+. .+ + |++|+|++|. ++..+...... .+..+ ++|+.|+|++
T Consensus 154 --~~~~l~~~l~----------~~~~~L~~L~Ls~n~-l~~~~~~~l~~---------------~l~~~~~~L~~L~Ls~ 205 (362)
T 3goz_A 154 --SSDELIQILA----------AIPANVNSLNLRGNN-LASKNCAELAK---------------FLASIPASVTSLDLSA 205 (362)
T ss_dssp --CHHHHHHHHH----------TSCTTCCEEECTTSC-GGGSCHHHHHH---------------HHHTSCTTCCEEECTT
T ss_pred --HHHHHHHHHh----------cCCccccEeeecCCC-CchhhHHHHHH---------------HHHhCCCCCCEEECCC
Confidence 1111111111 12 2 8999998864 44333211000 02244 4899999988
Q ss_pred CCccccchhhhccccCCCC-CCcccEEEEccCCCCCCCc-----ccccCCCCccEEeeccCc-------ccccccccccc
Q 047321 687 MKELEEWNYRITRKENISI-MPRLSSLQIMNCRKLKALP-----DYLLQTIALQKLSIYSCD-------LLEELPILEDR 753 (807)
Q Consensus 687 ~~~l~~~~~~~~~~~~~~~-l~~L~~L~l~~c~~L~~lp-----~~l~~l~~L~~L~l~~c~-------~l~~lP~~~~~ 753 (807)
+ .+....... ....+.. .++|+.|++++| .+...+ ..+..+++|+.|++++|. .+..++ .
T Consensus 206 N-~i~~~~~~~-l~~~l~~~~~~L~~L~Ls~N-~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~----~ 278 (362)
T 3goz_A 206 N-LLGLKSYAE-LAYIFSSIPNHVVSLNLCLN-CLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALG----A 278 (362)
T ss_dssp S-CGGGSCHHH-HHHHHHHSCTTCCEEECCSS-CCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHH----T
T ss_pred C-CCChhHHHH-HHHHHhcCCCCceEEECcCC-CCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHH----H
Confidence 6 454421100 0011222 358999999988 666543 234677889999998875 122333 4
Q ss_pred cCCCCCCCCeeeeccCC
Q 047321 754 RTTDIPRLSSLAIWYCP 770 (807)
Q Consensus 754 ~~~~l~~L~~L~i~~c~ 770 (807)
.+..+++|+.|++++++
T Consensus 279 ~~~~l~~L~~LdL~~N~ 295 (362)
T 3goz_A 279 AFPNIQKIILVDKNGKE 295 (362)
T ss_dssp TSTTCCEEEEECTTSCB
T ss_pred HhccCCceEEEecCCCc
Confidence 55677888888888765
No 131
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=98.82 E-value=3.2e-09 Score=101.75 Aligned_cols=141 Identities=17% Similarity=0.238 Sum_probs=107.4
Q ss_pred CCCCcc-cceEeccCCcCceeeCcccCCCCCCCCCCCCCCCCCCccccCcccccccccCCCccccchhhhccccCCCCCC
Q 047321 629 PLGKLP-LKKLELRDLESVKRVGNEFLGIEESSEDDPSSSSSSPSVIAFPKLKSLEIDGMKELEEWNYRITRKENISIMP 707 (807)
Q Consensus 629 ~l~~L~-L~~L~L~~~~~l~~i~~~~~~~~~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~l~ 707 (807)
.....+ |+.|+++++. ++.++. + ...+++|+.|+++++ .+..++ .+..++
T Consensus 14 ~~~~~~~L~~L~l~~n~-l~~i~~-~-------------------~~~~~~L~~L~Ls~N-~l~~~~-------~l~~l~ 64 (176)
T 1a9n_A 14 QYTNAVRDRELDLRGYK-IPVIEN-L-------------------GATLDQFDAIDFSDN-EIRKLD-------GFPLLR 64 (176)
T ss_dssp EEECTTSCEEEECTTSC-CCSCCC-G-------------------GGGTTCCSEEECCSS-CCCEEC-------CCCCCS
T ss_pred hcCCcCCceEEEeeCCC-CchhHH-h-------------------hhcCCCCCEEECCCC-CCCccc-------ccccCC
Confidence 344566 9999999864 554432 1 123459999999995 566552 466899
Q ss_pred cccEEEEccCCCCCCCcccc-cCCCCccEEeeccCcccccccccccccCCCCCCCCeeeeccCCCcccCCcc----CCCC
Q 047321 708 RLSSLQIMNCRKLKALPDYL-LQTIALQKLSIYSCDLLEELPILEDRRTTDIPRLSSLAIWYCPKLKVLPDY----LLRT 782 (807)
Q Consensus 708 ~L~~L~l~~c~~L~~lp~~l-~~l~~L~~L~l~~c~~l~~lP~~~~~~~~~l~~L~~L~i~~c~~l~~lP~~----l~~l 782 (807)
+|+.|++++| .+..+|..+ ..+++|+.|++++| .+..+|.+ ..+..+++|+.|++++|+ +..+|.. +..+
T Consensus 65 ~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~N-~i~~~~~~--~~l~~l~~L~~L~l~~N~-i~~~~~~~~~~~~~l 139 (176)
T 1a9n_A 65 RLKTLLVNNN-RICRIGEGLDQALPDLTELILTNN-SLVELGDL--DPLASLKSLTYLCILRNP-VTNKKHYRLYVIYKV 139 (176)
T ss_dssp SCCEEECCSS-CCCEECSCHHHHCTTCCEEECCSC-CCCCGGGG--GGGGGCTTCCEEECCSSG-GGGSTTHHHHHHHHC
T ss_pred CCCEEECCCC-cccccCcchhhcCCCCCEEECCCC-cCCcchhh--HhhhcCCCCCEEEecCCC-CCCcHhHHHHHHHHC
Confidence 9999999999 788888665 88999999999996 57888711 167789999999999865 6788875 8899
Q ss_pred Ccccccccccchhhhhhhhhh
Q 047321 783 TTLQAGEQDYENEKFSQRIAK 803 (807)
Q Consensus 783 ~~L~~L~l~~~~~~~~~~~~~ 803 (807)
++|+.||++.|...-......
T Consensus 140 ~~L~~Ld~~~n~~~~~~~~~~ 160 (176)
T 1a9n_A 140 PQVRVLDFQKVKLKERQEAEK 160 (176)
T ss_dssp TTCSEETTEECCHHHHHHHHH
T ss_pred CccceeCCCcCCHHHHHHHHH
Confidence 999999999998765443333
No 132
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=98.81 E-value=1.5e-08 Score=109.16 Aligned_cols=131 Identities=19% Similarity=0.211 Sum_probs=103.6
Q ss_pred cceEeccCCcCceeeCcccCCCCCCCCCCCCCCCCCCccc-cCcccccccccCCCccccchhhhccccCCCCCCcccEEE
Q 047321 635 LKKLELRDLESVKRVGNEFLGIEESSEDDPSSSSSSPSVI-AFPKLKSLEIDGMKELEEWNYRITRKENISIMPRLSSLQ 713 (807)
Q Consensus 635 L~~L~L~~~~~l~~i~~~~~~~~~l~~~~~~~~~~~~~~~-~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~l~~L~~L~ 713 (807)
++.|+|+++ .++.++... .. .+++|+.|+|+++ .+..++. ..+..+++|+.|+
T Consensus 41 l~~L~Ls~N-~l~~l~~~~-------------------~~~~l~~L~~L~L~~N-~i~~i~~-----~~~~~l~~L~~L~ 94 (361)
T 2xot_A 41 TALLDLSHN-NLSRLRAEW-------------------TPTRLTNLHSLLLSHN-HLNFISS-----EAFVPVPNLRYLD 94 (361)
T ss_dssp CSEEECCSS-CCCEECTTS-------------------SSSCCTTCCEEECCSS-CCCEECT-----TTTTTCTTCCEEE
T ss_pred CCEEECCCC-CCCccChhh-------------------hhhcccccCEEECCCC-cCCccCh-----hhccCCCCCCEEE
Confidence 999999984 477766542 22 7899999999984 6777664 3567899999999
Q ss_pred EccCCCCCCCcc-cccCCCCccEEeeccCcccccccccccccCCCCCCCCeeeeccCCCcccCCccC----CCCCccccc
Q 047321 714 IMNCRKLKALPD-YLLQTIALQKLSIYSCDLLEELPILEDRRTTDIPRLSSLAIWYCPKLKVLPDYL----LRTTTLQAG 788 (807)
Q Consensus 714 l~~c~~L~~lp~-~l~~l~~L~~L~l~~c~~l~~lP~~~~~~~~~l~~L~~L~i~~c~~l~~lP~~l----~~l~~L~~L 788 (807)
++++ ++..+|. .+..+++|+.|+|+++ .+..++ ...+..+++|++|++++ +.++.+|..+ .++++|+.|
T Consensus 95 Ls~N-~l~~~~~~~~~~l~~L~~L~L~~N-~i~~~~---~~~~~~l~~L~~L~L~~-N~l~~l~~~~~~~~~~l~~L~~L 168 (361)
T 2xot_A 95 LSSN-HLHTLDEFLFSDLQALEVLLLYNN-HIVVVD---RNAFEDMAQLQKLYLSQ-NQISRFPVELIKDGNKLPKLMLL 168 (361)
T ss_dssp CCSS-CCCEECTTTTTTCTTCCEEECCSS-CCCEEC---TTTTTTCTTCCEEECCS-SCCCSCCGGGTC----CTTCCEE
T ss_pred CCCC-cCCcCCHHHhCCCcCCCEEECCCC-cccEEC---HHHhCCcccCCEEECCC-CcCCeeCHHHhcCcccCCcCCEE
Confidence 9998 6888865 4788999999999996 466553 16778999999999998 5688898654 679999999
Q ss_pred ccccchhhh
Q 047321 789 EQDYENEKF 797 (807)
Q Consensus 789 ~l~~~~~~~ 797 (807)
++++|++..
T Consensus 169 ~L~~N~l~~ 177 (361)
T 2xot_A 169 DLSSNKLKK 177 (361)
T ss_dssp ECCSSCCCC
T ss_pred ECCCCCCCc
Confidence 999998863
No 133
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=98.79 E-value=3.4e-08 Score=104.81 Aligned_cols=182 Identities=14% Similarity=0.059 Sum_probs=116.7
Q ss_pred CccccccchHHHHHHHHhCCCCCCCCCceEEEEEccCCChHHHHHHHHHcCcccccccc-eEEEEEeCCCCCHHHHHHHH
Q 047321 104 GGVCGRVDEKNELLSKLLCGSSEQQKGLDVISLVGLGGIGKTTLAQLAYNNDEVKRNFE-KVIWVCVSNTFEEISVAKAI 182 (807)
Q Consensus 104 ~~~vGR~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~-~~~wv~~~~~~~~~~~~~~i 182 (807)
.+++|+++.++.+..++... ..+.+.|+|++|+||||+|+.+++... ...+. ..+.+..++....
T Consensus 25 ~~~~g~~~~~~~l~~~l~~~------~~~~~ll~G~~G~GKT~la~~l~~~l~-~~~~~~~~~~~~~~~~~~~------- 90 (327)
T 1iqp_A 25 DDIVGQEHIVKRLKHYVKTG------SMPHLLFAGPPGVGKTTAALALARELF-GENWRHNFLELNASDERGI------- 90 (327)
T ss_dssp TTCCSCHHHHHHHHHHHHHT------CCCEEEEESCTTSSHHHHHHHHHHHHH-GGGHHHHEEEEETTCHHHH-------
T ss_pred HHhhCCHHHHHHHHHHHHcC------CCCeEEEECcCCCCHHHHHHHHHHHhc-CCcccCceEEeeccccCch-------
Confidence 46999999999999988743 334589999999999999999987311 11111 1233332221100
Q ss_pred HHHcCCCCCCCccHHHHHHHHHHHH------hCCceEEEEeCCCCCCccChHHHHHhhcCCCCCcEEEEEcCCHHH-HHH
Q 047321 183 IEGLGVSAFGLSEFESLMKQIQEYI------TGKKIFLVLDDVWDGDYKKWDPFFSCLKNGHHESKILITTHDRSV-ALQ 255 (807)
Q Consensus 183 ~~~l~~~~~~~~~~~~~~~~l~~~l------~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~IliTTR~~~v-~~~ 255 (807)
+.....+.... .+++.++|+||++.-....+..+...+.....++++|+||....- ...
T Consensus 91 --------------~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~~~l~~~ 156 (327)
T 1iqp_A 91 --------------NVIREKVKEFARTKPIGGASFKIIFLDEADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEP 156 (327)
T ss_dssp --------------HTTHHHHHHHHHSCCGGGCSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHH
T ss_pred --------------HHHHHHHHHHHhhCCcCCCCCeEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCCccccCHH
Confidence 00111111111 257889999999765555666777777766677888888876431 111
Q ss_pred -hCCCceEeCCCCChhhHHHHHHHHHhccCCccCccchHHHHHHHHHHcCCCHHHHHHHHHHh
Q 047321 256 -LGSIDIIPVKELGEGECWLLFKQIAFLRRSFEDCEKLEPIGRKIASKCKGLPLAAKVIGNLL 317 (807)
Q Consensus 256 -~~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~~~~I~~~c~glPLai~~~~~~l 317 (807)
......+.+.+++.++...++...+...+.. --.+....|++.++|.|..+..+...+
T Consensus 157 l~sr~~~~~~~~l~~~~~~~~l~~~~~~~~~~----~~~~~~~~l~~~~~g~~r~~~~~l~~~ 215 (327)
T 1iqp_A 157 IQSRCAIFRFRPLRDEDIAKRLRYIAENEGLE----LTEEGLQAILYIAEGDMRRAINILQAA 215 (327)
T ss_dssp HHHTEEEEECCCCCHHHHHHHHHHHHHTTTCE----ECHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHhhCcEEEecCCCHHHHHHHHHHHHHhcCCC----CCHHHHHHHHHHCCCCHHHHHHHHHHH
Confidence 1113478999999999999998877433221 224567889999999998765544433
No 134
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=98.77 E-value=2.8e-08 Score=99.56 Aligned_cols=129 Identities=19% Similarity=0.215 Sum_probs=102.8
Q ss_pred CCCCeEEEEeeccCCCcchhhhhchhhHHHHHHhhcCCCCCC-C-CCCCcc-cceEeccCCcCceeeCcccCCCCCCCCC
Q 047321 586 QNLLRLRLRFGRVVDGEDEERRRKNEKDKQLLEALQPPLSHL-P-PLGKLP-LKKLELRDLESVKRVGNEFLGIEESSED 662 (807)
Q Consensus 586 ~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~l~p~~~~l-p-~l~~L~-L~~L~L~~~~~l~~i~~~~~~~~~l~~~ 662 (807)
++|+.|+|++|.+ ..+ | .++.++ |++|+|+++. ++.++...
T Consensus 40 ~~L~~L~Ls~n~i--------------------------~~~~~~~~~~l~~L~~L~L~~N~-l~~i~~~~--------- 83 (229)
T 3e6j_A 40 TNAQILYLHDNQI--------------------------TKLEPGVFDSLINLKELYLGSNQ-LGALPVGV--------- 83 (229)
T ss_dssp TTCSEEECCSSCC--------------------------CCCCTTTTTTCTTCCEEECCSSC-CCCCCTTT---------
T ss_pred CCCCEEEcCCCcc--------------------------CccCHHHhhCccCCcEEECCCCC-CCCcChhh---------
Confidence 7899999999885 233 2 277889 9999999854 55555332
Q ss_pred CCCCCCCCCccccCcccccccccCCCccccchhhhccccCCCCCCcccEEEEccCCCCCCCcccccCCCCccEEeeccCc
Q 047321 663 DPSSSSSSPSVIAFPKLKSLEIDGMKELEEWNYRITRKENISIMPRLSSLQIMNCRKLKALPDYLLQTIALQKLSIYSCD 742 (807)
Q Consensus 663 ~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~lp~~l~~l~~L~~L~l~~c~ 742 (807)
+..+++|+.|+|+++ .+..++. ..+..+++|+.|+++++ ++..+|..+..+++|+.|+++++
T Consensus 84 ----------~~~l~~L~~L~Ls~N-~l~~l~~-----~~~~~l~~L~~L~Ls~N-~l~~lp~~~~~l~~L~~L~L~~N- 145 (229)
T 3e6j_A 84 ----------FDSLTQLTVLDLGTN-QLTVLPS-----AVFDRLVHLKELFMCCN-KLTELPRGIERLTHLTHLALDQN- 145 (229)
T ss_dssp ----------TTTCTTCCEEECCSS-CCCCCCT-----TTTTTCTTCCEEECCSS-CCCSCCTTGGGCTTCSEEECCSS-
T ss_pred ----------cccCCCcCEEECCCC-cCCccCh-----hHhCcchhhCeEeccCC-cccccCcccccCCCCCEEECCCC-
Confidence 347899999999985 6776654 34568999999999998 78999999999999999999995
Q ss_pred ccccccccccccCCCCCCCCeeeeccCCC
Q 047321 743 LLEELPILEDRRTTDIPRLSSLAIWYCPK 771 (807)
Q Consensus 743 ~l~~lP~~~~~~~~~l~~L~~L~i~~c~~ 771 (807)
.+..+|. ..+..+++|+.|++.+++.
T Consensus 146 ~l~~~~~---~~~~~l~~L~~L~l~~N~~ 171 (229)
T 3e6j_A 146 QLKSIPH---GAFDRLSSLTHAYLFGNPW 171 (229)
T ss_dssp CCCCCCT---TTTTTCTTCCEEECTTSCB
T ss_pred cCCccCH---HHHhCCCCCCEEEeeCCCc
Confidence 6777761 3567899999999998664
No 135
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=98.77 E-value=4.6e-09 Score=123.70 Aligned_cols=114 Identities=16% Similarity=0.074 Sum_probs=97.2
Q ss_pred cccCcccccccccCCCccccchhhhccccCCCCCCcccEEEEccCCCCCCCcccccCCCCccEEeeccCccccccccccc
Q 047321 673 VIAFPKLKSLEIDGMKELEEWNYRITRKENISIMPRLSSLQIMNCRKLKALPDYLLQTIALQKLSIYSCDLLEELPILED 752 (807)
Q Consensus 673 ~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~lp~~l~~l~~L~~L~l~~c~~l~~lP~~~~ 752 (807)
+..+++|+.|+|+++ .+..++. .+..+++|+.|+|++| .+..+|..+..+++|+.|+|++| .+..+|
T Consensus 220 ~~~l~~L~~L~Ls~n-~l~~l~~------~~~~l~~L~~L~Ls~N-~l~~lp~~~~~l~~L~~L~Ls~N-~l~~lp---- 286 (727)
T 4b8c_D 220 KYDDQLWHALDLSNL-QIFNISA------NIFKYDFLTRLYLNGN-SLTELPAEIKNLSNLRVLDLSHN-RLTSLP---- 286 (727)
T ss_dssp --CCCCCCEEECTTS-CCSCCCG------GGGGCCSCSCCBCTTS-CCSCCCGGGGGGTTCCEEECTTS-CCSSCC----
T ss_pred hccCCCCcEEECCCC-CCCCCCh------hhcCCCCCCEEEeeCC-cCcccChhhhCCCCCCEEeCcCC-cCCccC----
Confidence 457899999999986 4666654 4457999999999999 78899999999999999999996 577999
Q ss_pred ccCCCCCCCCeeeeccCCCcccCCccCCCCCcccccccccchhhhhhh
Q 047321 753 RRTTDIPRLSSLAIWYCPKLKVLPDYLLRTTTLQAGEQDYENEKFSQR 800 (807)
Q Consensus 753 ~~~~~l~~L~~L~i~~c~~l~~lP~~l~~l~~L~~L~l~~~~~~~~~~ 800 (807)
..+..+++|++|++++| .++.+|..+++|++|+.|++++|++....|
T Consensus 287 ~~~~~l~~L~~L~L~~N-~l~~lp~~~~~l~~L~~L~L~~N~l~~~~p 333 (727)
T 4b8c_D 287 AELGSCFQLKYFYFFDN-MVTTLPWEFGNLCNLQFLGVEGNPLEKQFL 333 (727)
T ss_dssp SSGGGGTTCSEEECCSS-CCCCCCSSTTSCTTCCCEECTTSCCCSHHH
T ss_pred hhhcCCCCCCEEECCCC-CCCccChhhhcCCCccEEeCCCCccCCCCh
Confidence 78889999999999985 678999999999999999999999875443
No 136
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=98.75 E-value=1e-07 Score=98.90 Aligned_cols=172 Identities=9% Similarity=-0.007 Sum_probs=106.4
Q ss_pred ccccccchHHHHHHHHhCCCCCCCCCceEEEEEccCCChHHHHHHHHHcCccccc------ccceEEEEEeCCCCCHHHH
Q 047321 105 GVCGRVDEKNELLSKLLCGSSEQQKGLDVISLVGLGGIGKTTLAQLAYNNDEVKR------NFEKVIWVCVSNTFEEISV 178 (807)
Q Consensus 105 ~~vGR~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~------~f~~~~wv~~~~~~~~~~~ 178 (807)
.+.||++|.++|...|...-. ....+.+.|+|++|+|||++|+.|++...... .| ..++++.....+...+
T Consensus 21 ~L~~Re~E~~~i~~~L~~~i~--~~~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~-~~v~INc~~~~t~~~~ 97 (318)
T 3te6_A 21 LLKSQVEDFTRIFLPIYDSLM--SSQNKLFYITNADDSTKFQLVNDVMDELITSSARKELPIF-DYIHIDALELAGMDAL 97 (318)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH--TTCCCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCE-EEEEEETTCCC--HHH
T ss_pred ccCCHHHHHHHHHHHHHHHhc--CCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCce-EEEEEeccccCCHHHH
Confidence 489999999999988765322 34677899999999999999999987432111 12 3557777777888899
Q ss_pred HHHHHHHcCCCCCCC-ccHHHHHHHHHHH--HhCCceEEEEeCCCCCCccChHHHHHhhcCC-CCCc--EEEEEcCCH--
Q 047321 179 AKAIIEGLGVSAFGL-SEFESLMKQIQEY--ITGKKIFLVLDDVWDGDYKKWDPFFSCLKNG-HHES--KILITTHDR-- 250 (807)
Q Consensus 179 ~~~i~~~l~~~~~~~-~~~~~~~~~l~~~--l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~-~~gs--~IliTTR~~-- 250 (807)
+..|++++.+..... ...+.+...+... -.+++++++||++..-. .-+.+...+.+. ..++ .||.++...
T Consensus 98 ~~~I~~~L~g~~~~~~~~~~~L~~~f~~~~~~~~~~~ii~lDE~d~l~--~q~~L~~l~~~~~~~~s~~~vI~i~n~~d~ 175 (318)
T 3te6_A 98 YEKIWFAISKENLCGDISLEALNFYITNVPKAKKRKTLILIQNPENLL--SEKILQYFEKWISSKNSKLSIICVGGHNVT 175 (318)
T ss_dssp HHHHHHHHSCCC--CCCCHHHHHHHHHHSCGGGSCEEEEEEECCSSSC--CTHHHHHHHHHHHCSSCCEEEEEECCSSCC
T ss_pred HHHHHHHhcCCCCCchHHHHHHHHHHHHhhhccCCceEEEEecHHHhh--cchHHHHHHhcccccCCcEEEEEEecCccc
Confidence 999999996543222 2223232222221 24678999999995542 223344443211 1122 233334332
Q ss_pred -H--H----HHHhCCCceEeCCCCChhhHHHHHHHHHhc
Q 047321 251 -S--V----ALQLGSIDIIPVKELGEGECWLLFKQIAFL 282 (807)
Q Consensus 251 -~--v----~~~~~~~~~~~l~~L~~~~~~~Lf~~~a~~ 282 (807)
. + ...+. ...+.+.+++.++-.+++.+++-.
T Consensus 176 ~~~~L~~~v~SR~~-~~~i~F~pYt~~el~~Il~~Rl~~ 213 (318)
T 3te6_A 176 IREQINIMPSLKAH-FTEIKLNKVDKNELQQMIITRLKS 213 (318)
T ss_dssp CHHHHHTCHHHHTT-EEEEECCCCCHHHHHHHHHHHHHH
T ss_pred chhhcchhhhccCC-ceEEEeCCCCHHHHHHHHHHHHHh
Confidence 1 1 11222 247899999999999999988743
No 137
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=98.72 E-value=1.1e-08 Score=94.90 Aligned_cols=126 Identities=17% Similarity=0.241 Sum_probs=95.0
Q ss_pred cc-cceEeccCCcCce--eeCcccCCCCCCCCCCCCCCCCCCccccCcccccccccCCCccccchhhhccccCCCCCCcc
Q 047321 633 LP-LKKLELRDLESVK--RVGNEFLGIEESSEDDPSSSSSSPSVIAFPKLKSLEIDGMKELEEWNYRITRKENISIMPRL 709 (807)
Q Consensus 633 L~-L~~L~L~~~~~l~--~i~~~~~~~~~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~l~~L 709 (807)
.+ |+.|+++++. +. .++.. +..+++|+.|+++++ .+..+. .+..+++|
T Consensus 16 ~~~l~~L~l~~n~-l~~~~~~~~--------------------~~~l~~L~~L~l~~n-~l~~~~-------~~~~l~~L 66 (149)
T 2je0_A 16 PSDVKELVLDNSR-SNEGKLEGL--------------------TDEFEELEFLSTINV-GLTSIA-------NLPKLNKL 66 (149)
T ss_dssp GGGCSEEECTTCB-CBTTBCCSC--------------------CTTCTTCCEEECTTS-CCCCCT-------TCCCCTTC
T ss_pred CccCeEEEccCCc-CChhHHHHH--------------------HhhcCCCcEEECcCC-CCCCch-------hhhcCCCC
Confidence 35 9999999865 43 44432 347899999999986 565552 45678999
Q ss_pred cEEEEccCCCCCC-CcccccCCCCccEEeeccCcccccccccccccCCCCCCCCeeeeccCCCcccCCc----cCCCCCc
Q 047321 710 SSLQIMNCRKLKA-LPDYLLQTIALQKLSIYSCDLLEELPILEDRRTTDIPRLSSLAIWYCPKLKVLPD----YLLRTTT 784 (807)
Q Consensus 710 ~~L~l~~c~~L~~-lp~~l~~l~~L~~L~l~~c~~l~~lP~~~~~~~~~l~~L~~L~i~~c~~l~~lP~----~l~~l~~ 784 (807)
+.|++++| .+.. +|..+..+++|++|++++|. +..+|.. ..+..+++|++|++++| .++.+|. .+..+++
T Consensus 67 ~~L~Ls~n-~i~~~~~~~~~~l~~L~~L~ls~N~-i~~~~~~--~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~~~~l~~ 141 (149)
T 2je0_A 67 KKLELSDN-RVSGGLEVLAEKCPNLTHLNLSGNK-IKDLSTI--EPLKKLENLKSLDLFNC-EVTNLNDYRENVFKLLPQ 141 (149)
T ss_dssp CEEECCSS-CCCSCTHHHHHHCTTCCEEECTTSC-CCSHHHH--GGGGGCTTCCEEECTTC-GGGGSTTHHHHHHHHCTT
T ss_pred CEEECCCC-cccchHHHHhhhCCCCCEEECCCCc-CCChHHH--HHHhhCCCCCEEeCcCC-cccchHHHHHHHHHHCCC
Confidence 99999999 5666 78777779999999999964 6665310 45678999999999986 5677765 6788999
Q ss_pred cccccccc
Q 047321 785 LQAGEQDY 792 (807)
Q Consensus 785 L~~L~l~~ 792 (807)
|+.|++++
T Consensus 142 L~~L~l~d 149 (149)
T 2je0_A 142 LTYLDGYD 149 (149)
T ss_dssp CCEETTBC
T ss_pred cccccCCC
Confidence 99998864
No 138
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.72 E-value=3.2e-10 Score=129.33 Aligned_cols=108 Identities=18% Similarity=0.200 Sum_probs=91.3
Q ss_pred cccccccccCCCccccchhhhccccCCCCCCcccEEEEccCCCCCCCcccccCCCCccEEeeccCcccccccccccccCC
Q 047321 677 PKLKSLEIDGMKELEEWNYRITRKENISIMPRLSSLQIMNCRKLKALPDYLLQTIALQKLSIYSCDLLEELPILEDRRTT 756 (807)
Q Consensus 677 ~~L~~L~l~~~~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~lp~~l~~l~~L~~L~l~~c~~l~~lP~~~~~~~~ 756 (807)
..|+.|+++++ .+..+|. +..+++|+.|++++| .++.+|..++.+++|+.|+|+++ .+..+| .+.
T Consensus 441 ~~L~~L~Ls~n-~l~~lp~-------~~~l~~L~~L~Ls~N-~l~~lp~~~~~l~~L~~L~Ls~N-~l~~lp-----~l~ 505 (567)
T 1dce_A 441 ADVRVLHLAHK-DLTVLCH-------LEQLLLVTHLDLSHN-RLRALPPALAALRCLEVLQASDN-ALENVD-----GVA 505 (567)
T ss_dssp TTCSEEECTTS-CCSSCCC-------GGGGTTCCEEECCSS-CCCCCCGGGGGCTTCCEEECCSS-CCCCCG-----GGT
T ss_pred cCceEEEecCC-CCCCCcC-------ccccccCcEeecCcc-cccccchhhhcCCCCCEEECCCC-CCCCCc-----ccC
Confidence 35788888875 6666542 567899999999999 78899999999999999999995 677787 568
Q ss_pred CCCCCCeeeeccCCCcccC--CccCCCCCcccccccccchhhhhhh
Q 047321 757 DIPRLSSLAIWYCPKLKVL--PDYLLRTTTLQAGEQDYENEKFSQR 800 (807)
Q Consensus 757 ~l~~L~~L~i~~c~~l~~l--P~~l~~l~~L~~L~l~~~~~~~~~~ 800 (807)
.+++|+.|++++| .++.+ |..+.++++|+.|++++|++....+
T Consensus 506 ~l~~L~~L~Ls~N-~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~ 550 (567)
T 1dce_A 506 NLPRLQELLLCNN-RLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEG 550 (567)
T ss_dssp TCSSCCEEECCSS-CCCSSSTTGGGGGCTTCCEEECTTSGGGGSSS
T ss_pred CCCCCcEEECCCC-CCCCCCCcHHHhcCCCCCEEEecCCcCCCCcc
Confidence 8999999999985 57777 8999999999999999999976543
No 139
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=98.72 E-value=3.4e-08 Score=96.02 Aligned_cols=111 Identities=15% Similarity=0.154 Sum_probs=89.9
Q ss_pred CcccccccccCCCccccchhhhccccCCCCCCcccEEEEccCCCCCCCcc-cccCCCCccEEeeccCccccccccccccc
Q 047321 676 FPKLKSLEIDGMKELEEWNYRITRKENISIMPRLSSLQIMNCRKLKALPD-YLLQTIALQKLSIYSCDLLEELPILEDRR 754 (807)
Q Consensus 676 l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~lp~-~l~~l~~L~~L~l~~c~~l~~lP~~~~~~ 754 (807)
+++|+.|+++++ .+..++. .+..+++|+.|+++++ .+..++. .+..+++|++|+++++ .+..+|. ..
T Consensus 30 ~~~l~~L~L~~n-~i~~ip~------~~~~l~~L~~L~Ls~N-~i~~i~~~~f~~l~~L~~L~Ls~N-~l~~i~~---~~ 97 (193)
T 2wfh_A 30 PRDVTELYLDGN-QFTLVPK------ELSNYKHLTLIDLSNN-RISTLSNQSFSNMTQLLTLILSYN-RLRCIPP---RT 97 (193)
T ss_dssp CTTCCEEECCSS-CCCSCCG------GGGGCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS-CCCBCCT---TT
T ss_pred CCCCCEEECCCC-cCchhHH------HhhcccCCCEEECCCC-cCCEeCHhHccCCCCCCEEECCCC-ccCEeCH---HH
Confidence 468999999984 6666654 4567999999999998 7777764 5889999999999995 5777761 45
Q ss_pred CCCCCCCCeeeeccCCCcccCCc-cCCCCCcccccccccchhhhhh
Q 047321 755 TTDIPRLSSLAIWYCPKLKVLPD-YLLRTTTLQAGEQDYENEKFSQ 799 (807)
Q Consensus 755 ~~~l~~L~~L~i~~c~~l~~lP~-~l~~l~~L~~L~l~~~~~~~~~ 799 (807)
+..+++|+.|++++ +.++.+|. .+..+++|+.|++++|++...-
T Consensus 98 f~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~L~~N~~~C~c 142 (193)
T 2wfh_A 98 FDGLKSLRLLSLHG-NDISVVPEGAFNDLSALSHLAIGANPLYCDC 142 (193)
T ss_dssp TTTCTTCCEEECCS-SCCCBCCTTTTTTCTTCCEEECCSSCEECSG
T ss_pred hCCCCCCCEEECCC-CCCCeeChhhhhcCccccEEEeCCCCeecCC
Confidence 78899999999998 46778875 5889999999999999886443
No 140
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=98.68 E-value=2.1e-07 Score=100.77 Aligned_cols=195 Identities=16% Similarity=0.165 Sum_probs=116.1
Q ss_pred CccccccchHHHHHHHHhCCCCCCCCCceEEEEEccCCChHHHHHHHHHcCcccccccceEEEEEeCCCCCHHHHHHHHH
Q 047321 104 GGVCGRVDEKNELLSKLLCGSSEQQKGLDVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSNTFEEISVAKAII 183 (807)
Q Consensus 104 ~~~vGR~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 183 (807)
.+++||++.++.+...+.... ....+.|+|+.|+||||+|+.+++.......+. ............+.
T Consensus 16 ~~~vg~~~~~~~L~~~l~~~~-----~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~-------~~~~~~~~~~~~~~ 83 (373)
T 1jr3_A 16 ADVVGQEHVLTALANGLSLGR-----IHHAYLFSGTRGVGKTSIARLLAKGLNCETGIT-------ATPCGVCDNCREIE 83 (373)
T ss_dssp TTSCSCHHHHHHHHHHHHHTC-----CCSEEEEESCTTSSHHHHHHHHHHHHSCTTCSC-------SSCCSSSHHHHHHH
T ss_pred hhccCcHHHHHHHHHHHHhCC-----CCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCC-------CCCCcccHHHHHHh
Confidence 359999999999999987432 335789999999999999999876321111000 00000000011111
Q ss_pred HHc-------CC-CCCCCccHHHHHHHHHHH-HhCCceEEEEeCCCCCCccChHHHHHhhcCCCCCcEEEEEcCCHH-HH
Q 047321 184 EGL-------GV-SAFGLSEFESLMKQIQEY-ITGKKIFLVLDDVWDGDYKKWDPFFSCLKNGHHESKILITTHDRS-VA 253 (807)
Q Consensus 184 ~~l-------~~-~~~~~~~~~~~~~~l~~~-l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~IliTTR~~~-v~ 253 (807)
... .. ..........+...+... ..+++.++|+||+..-+......+...+.....+..+|++|.... +.
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~~l~ 163 (373)
T 1jr3_A 84 QGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLP 163 (373)
T ss_dssp TSCCSSCEEEETTCSCCSSCHHHHHHHTTSCCSSSSSEEEEEECGGGSCHHHHHHHHHHHHSCCSSEEEEEEESCGGGSC
T ss_pred ccCCCceEEecccccCCHHHHHHHHHHHhhccccCCeEEEEEECcchhcHHHHHHHHHHHhcCCCceEEEEEeCChHhCc
Confidence 100 00 001112222222221111 135678999999966555566677777766666777777776543 11
Q ss_pred -HHhCCCceEeCCCCChhhHHHHHHHHHhccCCccCccchHHHHHHHHHHcCCCHHHHHHHH
Q 047321 254 -LQLGSIDIIPVKELGEGECWLLFKQIAFLRRSFEDCEKLEPIGRKIASKCKGLPLAAKVIG 314 (807)
Q Consensus 254 -~~~~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~~~~I~~~c~glPLai~~~~ 314 (807)
........+++.+++.++..+++.+.+...+.. --.+.+..|++.++|.|..+..+.
T Consensus 164 ~~l~sr~~~i~~~~l~~~~~~~~l~~~~~~~~~~----~~~~a~~~l~~~~~G~~r~~~~~l 221 (373)
T 1jr3_A 164 VTILSRCLQFHLKALDVEQIRHQLEHILNEEHIA----HEPRALQLLARAAEGSLRDALSLT 221 (373)
T ss_dssp HHHHTTSEEEECCCCCHHHHHHHHHHHHHHHTCC----BCHHHHHHHHHHSSSCHHHHHHHH
T ss_pred HHHHhheeEeeCCCCCHHHHHHHHHHHHHHcCCC----CCHHHHHHHHHHCCCCHHHHHHHH
Confidence 112234689999999999999998776432221 124557889999999999876554
No 141
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=98.64 E-value=5.7e-09 Score=122.91 Aligned_cols=116 Identities=20% Similarity=0.275 Sum_probs=87.6
Q ss_pred CCCcc-cceEeccCCcCceeeCcccCCCCCCCCCCCCCCCCCCccccCcccccccccCCCccccchhhhccccCCCCCCc
Q 047321 630 LGKLP-LKKLELRDLESVKRVGNEFLGIEESSEDDPSSSSSSPSVIAFPKLKSLEIDGMKELEEWNYRITRKENISIMPR 708 (807)
Q Consensus 630 l~~L~-L~~L~L~~~~~l~~i~~~~~~~~~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~l~~ 708 (807)
+..++ |+.|+|+++. +..++.. +..+++|+.|+|+++ .+..+|. .+..+++
T Consensus 220 ~~~l~~L~~L~Ls~n~-l~~l~~~--------------------~~~l~~L~~L~Ls~N-~l~~lp~------~~~~l~~ 271 (727)
T 4b8c_D 220 KYDDQLWHALDLSNLQ-IFNISAN--------------------IFKYDFLTRLYLNGN-SLTELPA------EIKNLSN 271 (727)
T ss_dssp --CCCCCCEEECTTSC-CSCCCGG--------------------GGGCCSCSCCBCTTS-CCSCCCG------GGGGGTT
T ss_pred hccCCCCcEEECCCCC-CCCCChh--------------------hcCCCCCCEEEeeCC-cCcccCh------hhhCCCC
Confidence 66778 9999999855 5555543 347788999999885 5666654 4567889
Q ss_pred ccEEEEccCCCCCCCcccccCCCCccEEeeccCcccccccccccccCCCCCCCCeeeeccCCCcccCCccC
Q 047321 709 LSSLQIMNCRKLKALPDYLLQTIALQKLSIYSCDLLEELPILEDRRTTDIPRLSSLAIWYCPKLKVLPDYL 779 (807)
Q Consensus 709 L~~L~l~~c~~L~~lp~~l~~l~~L~~L~l~~c~~l~~lP~~~~~~~~~l~~L~~L~i~~c~~l~~lP~~l 779 (807)
|+.|+|++| ++..+|..+..+++|++|+|++| .+..+| ..+..+++|+.|++++|+....+|..+
T Consensus 272 L~~L~Ls~N-~l~~lp~~~~~l~~L~~L~L~~N-~l~~lp----~~~~~l~~L~~L~L~~N~l~~~~p~~~ 336 (727)
T 4b8c_D 272 LRVLDLSHN-RLTSLPAELGSCFQLKYFYFFDN-MVTTLP----WEFGNLCNLQFLGVEGNPLEKQFLKIL 336 (727)
T ss_dssp CCEEECTTS-CCSSCCSSGGGGTTCSEEECCSS-CCCCCC----SSTTSCTTCCCEECTTSCCCSHHHHHH
T ss_pred CCEEeCcCC-cCCccChhhcCCCCCCEEECCCC-CCCccC----hhhhcCCCccEEeCCCCccCCCChHHH
Confidence 999999888 67788888888899999999886 678888 678888899999998876554455433
No 142
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=98.64 E-value=1.1e-07 Score=90.85 Aligned_cols=114 Identities=22% Similarity=0.202 Sum_probs=91.0
Q ss_pred cCcccccccccCCCccccchhhhccccCCCCCCcccEEEEccCCCCCCCccc-ccCCCCccEEeeccCcccccccccccc
Q 047321 675 AFPKLKSLEIDGMKELEEWNYRITRKENISIMPRLSSLQIMNCRKLKALPDY-LLQTIALQKLSIYSCDLLEELPILEDR 753 (807)
Q Consensus 675 ~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~lp~~-l~~l~~L~~L~l~~c~~l~~lP~~~~~ 753 (807)
.+++|+.|+++++ .+..++. ..+..+++|+.|++++| .++.+|.. +..+++|+.|+++++ .+..+|. .
T Consensus 26 ~~~~l~~L~l~~n-~l~~~~~-----~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~---~ 94 (177)
T 2o6r_A 26 IPSSATRLELESN-KLQSLPH-----GVFDKLTQLTKLSLSQN-QIQSLPDGVFDKLTKLTILYLHEN-KLQSLPN---G 94 (177)
T ss_dssp CCTTCSEEECCSS-CCCCCCT-----TTTTTCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS-CCCCCCT---T
T ss_pred CCCCCcEEEeCCC-cccEeCH-----HHhcCcccccEEECCCC-cceEeChhHccCCCccCEEECCCC-CccccCH---H
Confidence 4578999999985 5666553 34567899999999998 78888765 588999999999996 5777761 3
Q ss_pred cCCCCCCCCeeeeccCCCcccCCcc-CCCCCcccccccccchhhhhhh
Q 047321 754 RTTDIPRLSSLAIWYCPKLKVLPDY-LLRTTTLQAGEQDYENEKFSQR 800 (807)
Q Consensus 754 ~~~~l~~L~~L~i~~c~~l~~lP~~-l~~l~~L~~L~l~~~~~~~~~~ 800 (807)
.+..+++|+.|++++| .++.+|.. +..+++|+.|++++|++....+
T Consensus 95 ~~~~l~~L~~L~l~~N-~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 141 (177)
T 2o6r_A 95 VFDKLTQLKELALDTN-QLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 141 (177)
T ss_dssp TTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred HhhCCcccCEEECcCC-cceEeCHHHhcCCcccCEEEecCCCeeccCc
Confidence 4578999999999985 67788855 5889999999999999865544
No 143
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=98.63 E-value=4.4e-08 Score=92.86 Aligned_cols=110 Identities=17% Similarity=0.135 Sum_probs=90.6
Q ss_pred cCcccccccccCCCccc--cchhhhccccCCCCCCcccEEEEccCCCCCCCcccccCCCCccEEeeccCccccc-ccccc
Q 047321 675 AFPKLKSLEIDGMKELE--EWNYRITRKENISIMPRLSSLQIMNCRKLKALPDYLLQTIALQKLSIYSCDLLEE-LPILE 751 (807)
Q Consensus 675 ~l~~L~~L~l~~~~~l~--~~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~lp~~l~~l~~L~~L~l~~c~~l~~-lP~~~ 751 (807)
.+++|+.|+++++ .+. .++. .+..+++|+.|++++| .++.+ ..+..+++|+.|++++|. +.. +|
T Consensus 22 ~~~~L~~L~l~~n-~l~~~~i~~------~~~~l~~L~~L~l~~n-~l~~~-~~~~~l~~L~~L~Ls~N~-l~~~~~--- 88 (168)
T 2ell_A 22 TPAAVRELVLDNC-KSNDGKIEG------LTAEFVNLEFLSLINV-GLISV-SNLPKLPKLKKLELSENR-IFGGLD--- 88 (168)
T ss_dssp CTTSCSEEECCSC-BCBTTBCSS------CCGGGGGCCEEEEESS-CCCCC-SSCCCCSSCCEEEEESCC-CCSCCC---
T ss_pred CcccCCEEECCCC-CCChhhHHH------HHHhCCCCCEEeCcCC-CCCCh-hhhccCCCCCEEECcCCc-CchHHH---
Confidence 5688999999997 455 4543 3567899999999999 58888 688899999999999975 555 66
Q ss_pred cccCCCCCCCCeeeeccCCCcccCC--ccCCCCCcccccccccchhhhhh
Q 047321 752 DRRTTDIPRLSSLAIWYCPKLKVLP--DYLLRTTTLQAGEQDYENEKFSQ 799 (807)
Q Consensus 752 ~~~~~~l~~L~~L~i~~c~~l~~lP--~~l~~l~~L~~L~l~~~~~~~~~ 799 (807)
..+..+++|+.|++++| .++.+| ..+..+++|+.|++++|++....
T Consensus 89 -~~~~~l~~L~~L~Ls~N-~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~ 136 (168)
T 2ell_A 89 -MLAEKLPNLTHLNLSGN-KLKDISTLEPLKKLECLKSLDLFNCEVTNLN 136 (168)
T ss_dssp -HHHHHCTTCCEEECBSS-SCCSSGGGGGGSSCSCCCEEECCSSGGGTST
T ss_pred -HHHhhCCCCCEEeccCC-ccCcchhHHHHhcCCCCCEEEeeCCcCcchH
Confidence 55567999999999986 678877 78899999999999999987543
No 144
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=98.63 E-value=9.5e-08 Score=95.00 Aligned_cols=110 Identities=15% Similarity=0.154 Sum_probs=90.5
Q ss_pred CcccccccccCCCccccchhhhccccCCCCCCcccEEEEccCCCCCCC-cccccCCCCccEEeeccCccccccccccccc
Q 047321 676 FPKLKSLEIDGMKELEEWNYRITRKENISIMPRLSSLQIMNCRKLKAL-PDYLLQTIALQKLSIYSCDLLEELPILEDRR 754 (807)
Q Consensus 676 l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~l-p~~l~~l~~L~~L~l~~c~~l~~lP~~~~~~ 754 (807)
.++|+.|+++++ .+..++. ..+..+++|+.|++++| .+..+ |..+..+++|++|+|+++ .+..+|. ..
T Consensus 31 ~~~l~~L~l~~n-~i~~i~~-----~~~~~l~~L~~L~Ls~N-~i~~~~~~~~~~l~~L~~L~Ls~N-~l~~l~~---~~ 99 (220)
T 2v9t_B 31 PETITEIRLEQN-TIKVIPP-----GAFSPYKKLRRIDLSNN-QISELAPDAFQGLRSLNSLVLYGN-KITELPK---SL 99 (220)
T ss_dssp CTTCCEEECCSS-CCCEECT-----TSSTTCTTCCEEECCSS-CCCEECTTTTTTCSSCCEEECCSS-CCCCCCT---TT
T ss_pred CcCCCEEECCCC-cCCCcCH-----hHhhCCCCCCEEECCCC-cCCCcCHHHhhCCcCCCEEECCCC-cCCccCH---hH
Confidence 368999999984 6776654 45678999999999999 67666 778999999999999995 6888871 33
Q ss_pred CCCCCCCCeeeeccCCCcccC-CccCCCCCcccccccccchhhh
Q 047321 755 TTDIPRLSSLAIWYCPKLKVL-PDYLLRTTTLQAGEQDYENEKF 797 (807)
Q Consensus 755 ~~~l~~L~~L~i~~c~~l~~l-P~~l~~l~~L~~L~l~~~~~~~ 797 (807)
+..+++|+.|++++|. ++.+ |..+..+++|+.|++++|.+..
T Consensus 100 f~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~l~~ 142 (220)
T 2v9t_B 100 FEGLFSLQLLLLNANK-INCLRVDAFQDLHNLNLLSLYDNKLQT 142 (220)
T ss_dssp TTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCSC
T ss_pred ccCCCCCCEEECCCCC-CCEeCHHHcCCCCCCCEEECCCCcCCE
Confidence 5789999999999854 5655 5789999999999999998864
No 145
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=98.62 E-value=7.6e-08 Score=95.69 Aligned_cols=112 Identities=11% Similarity=0.123 Sum_probs=89.6
Q ss_pred CcccccccccCCCccccchhhhccccCCCCCCcccEEEEccCCCCCCCcc-cccCCCCccEEeeccCccccccccccccc
Q 047321 676 FPKLKSLEIDGMKELEEWNYRITRKENISIMPRLSSLQIMNCRKLKALPD-YLLQTIALQKLSIYSCDLLEELPILEDRR 754 (807)
Q Consensus 676 l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~lp~-~l~~l~~L~~L~l~~c~~l~~lP~~~~~~ 754 (807)
.+.++.|+++++ .+..++. ...+..+++|+.|+++++ .++.+|. .+..+++|++|+++++ .+..+|. ..
T Consensus 31 ~~~~~~L~L~~N-~l~~~~~----~~~~~~l~~L~~L~L~~N-~i~~i~~~~~~~l~~L~~L~Ls~N-~l~~~~~---~~ 100 (220)
T 2v70_A 31 PQYTAELRLNNN-EFTVLEA----TGIFKKLPQLRKINFSNN-KITDIEEGAFEGASGVNEILLTSN-RLENVQH---KM 100 (220)
T ss_dssp CTTCSEEECCSS-CCCEECC----CCCGGGCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSS-CCCCCCG---GG
T ss_pred CCCCCEEEcCCC-cCCccCc----hhhhccCCCCCEEECCCC-cCCEECHHHhCCCCCCCEEECCCC-ccCccCH---hH
Confidence 456789999984 6766643 233567999999999998 6877765 6889999999999996 5666651 45
Q ss_pred CCCCCCCCeeeeccCCCcccC-CccCCCCCcccccccccchhhhh
Q 047321 755 TTDIPRLSSLAIWYCPKLKVL-PDYLLRTTTLQAGEQDYENEKFS 798 (807)
Q Consensus 755 ~~~l~~L~~L~i~~c~~l~~l-P~~l~~l~~L~~L~l~~~~~~~~ 798 (807)
+..+++|+.|++++|. ++.+ |..+..+++|+.|++++|++...
T Consensus 101 ~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~L~~N~l~~~ 144 (220)
T 2v70_A 101 FKGLESLKTLMLRSNR-ITCVGNDSFIGLSSVRLLSLYDNQITTV 144 (220)
T ss_dssp GTTCSSCCEEECTTSC-CCCBCTTSSTTCTTCSEEECTTSCCCCB
T ss_pred hcCCcCCCEEECCCCc-CCeECHhHcCCCccCCEEECCCCcCCEE
Confidence 7889999999999865 5555 78899999999999999988654
No 146
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=98.59 E-value=4.3e-08 Score=90.81 Aligned_cols=111 Identities=17% Similarity=0.126 Sum_probs=90.8
Q ss_pred cCcccccccccCCCccc--cchhhhccccCCCCCCcccEEEEccCCCCCCCcccccCCCCccEEeeccCccccc-ccccc
Q 047321 675 AFPKLKSLEIDGMKELE--EWNYRITRKENISIMPRLSSLQIMNCRKLKALPDYLLQTIALQKLSIYSCDLLEE-LPILE 751 (807)
Q Consensus 675 ~l~~L~~L~l~~~~~l~--~~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~lp~~l~~l~~L~~L~l~~c~~l~~-lP~~~ 751 (807)
.+++|+.|+++++ .+. .++. .+..+++|+.|++++| .++.+ ..+..+++|+.|++++|. +.. +|
T Consensus 15 ~~~~l~~L~l~~n-~l~~~~~~~------~~~~l~~L~~L~l~~n-~l~~~-~~~~~l~~L~~L~Ls~n~-i~~~~~--- 81 (149)
T 2je0_A 15 TPSDVKELVLDNS-RSNEGKLEG------LTDEFEELEFLSTINV-GLTSI-ANLPKLNKLKKLELSDNR-VSGGLE--- 81 (149)
T ss_dssp CGGGCSEEECTTC-BCBTTBCCS------CCTTCTTCCEEECTTS-CCCCC-TTCCCCTTCCEEECCSSC-CCSCTH---
T ss_pred CCccCeEEEccCC-cCChhHHHH------HHhhcCCCcEEECcCC-CCCCc-hhhhcCCCCCEEECCCCc-ccchHH---
Confidence 5689999999997 455 4443 4578999999999999 78888 678899999999999975 555 77
Q ss_pred cccCCCCCCCCeeeeccCCCcccCC--ccCCCCCcccccccccchhhhhhh
Q 047321 752 DRRTTDIPRLSSLAIWYCPKLKVLP--DYLLRTTTLQAGEQDYENEKFSQR 800 (807)
Q Consensus 752 ~~~~~~l~~L~~L~i~~c~~l~~lP--~~l~~l~~L~~L~l~~~~~~~~~~ 800 (807)
..+..+++|++|++++|. ++.+| ..+.++++|+.|++++|++....+
T Consensus 82 -~~~~~l~~L~~L~ls~N~-i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~ 130 (149)
T 2je0_A 82 -VLAEKCPNLTHLNLSGNK-IKDLSTIEPLKKLENLKSLDLFNCEVTNLND 130 (149)
T ss_dssp -HHHHHCTTCCEEECTTSC-CCSHHHHGGGGGCTTCCEEECTTCGGGGSTT
T ss_pred -HHhhhCCCCCEEECCCCc-CCChHHHHHHhhCCCCCEEeCcCCcccchHH
Confidence 555679999999999865 77765 788999999999999999875443
No 147
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=98.57 E-value=3e-08 Score=94.80 Aligned_cols=134 Identities=19% Similarity=0.194 Sum_probs=100.6
Q ss_pred hccCCCCCCeEEEEeeccCCCcchhhhhchhhHHHHHHhhcCCCCCCCCCCCc-c-cceEeccCCcCceeeCcccCCCCC
Q 047321 581 QLYNQQNLLRLRLRFGRVVDGEDEERRRKNEKDKQLLEALQPPLSHLPPLGKL-P-LKKLELRDLESVKRVGNEFLGIEE 658 (807)
Q Consensus 581 ~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~l~p~~~~lp~l~~L-~-L~~L~L~~~~~l~~i~~~~~~~~~ 658 (807)
.+.++.+|+.|++++|.+ ..+|.+..+ | |++|+++++. ++.++ .
T Consensus 14 ~~~~~~~L~~L~l~~n~l--------------------------~~i~~~~~~~~~L~~L~Ls~N~-l~~~~-~------ 59 (176)
T 1a9n_A 14 QYTNAVRDRELDLRGYKI--------------------------PVIENLGATLDQFDAIDFSDNE-IRKLD-G------ 59 (176)
T ss_dssp EEECTTSCEEEECTTSCC--------------------------CSCCCGGGGTTCCSEEECCSSC-CCEEC-C------
T ss_pred hcCCcCCceEEEeeCCCC--------------------------chhHHhhhcCCCCCEEECCCCC-CCccc-c------
Confidence 356778999999998875 344554443 4 9999999854 65552 1
Q ss_pred CCCCCCCCCCCCCccccCcccccccccCCCccccchhhhccccCCCCCCcccEEEEccCCCCCCCcc--cccCCCCccEE
Q 047321 659 SSEDDPSSSSSSPSVIAFPKLKSLEIDGMKELEEWNYRITRKENISIMPRLSSLQIMNCRKLKALPD--YLLQTIALQKL 736 (807)
Q Consensus 659 l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~lp~--~l~~l~~L~~L 736 (807)
+..+++|+.|+++++ .+..++. ..+..+++|+.|++++| .++.+|. .+..+++|+.|
T Consensus 60 --------------l~~l~~L~~L~Ls~N-~l~~~~~-----~~~~~l~~L~~L~L~~N-~i~~~~~~~~l~~l~~L~~L 118 (176)
T 1a9n_A 60 --------------FPLLRRLKTLLVNNN-RICRIGE-----GLDQALPDLTELILTNN-SLVELGDLDPLASLKSLTYL 118 (176)
T ss_dssp --------------CCCCSSCCEEECCSS-CCCEECS-----CHHHHCTTCCEEECCSC-CCCCGGGGGGGGGCTTCCEE
T ss_pred --------------cccCCCCCEEECCCC-cccccCc-----chhhcCCCCCEEECCCC-cCCcchhhHhhhcCCCCCEE
Confidence 447899999999985 6766653 12257899999999999 7888987 78899999999
Q ss_pred eeccCcccccccccccccCCCCCCCCeeeeccCC
Q 047321 737 SIYSCDLLEELPILEDRRTTDIPRLSSLAIWYCP 770 (807)
Q Consensus 737 ~l~~c~~l~~lP~~~~~~~~~l~~L~~L~i~~c~ 770 (807)
++++|+ +..+|......+..+++|+.|++++|.
T Consensus 119 ~l~~N~-i~~~~~~~~~~~~~l~~L~~Ld~~~n~ 151 (176)
T 1a9n_A 119 CILRNP-VTNKKHYRLYVIYKVPQVRVLDFQKVK 151 (176)
T ss_dssp ECCSSG-GGGSTTHHHHHHHHCTTCSEETTEECC
T ss_pred EecCCC-CCCcHhHHHHHHHHCCccceeCCCcCC
Confidence 999974 667771111136789999999998765
No 148
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=98.56 E-value=3e-07 Score=97.03 Aligned_cols=182 Identities=12% Similarity=-0.006 Sum_probs=111.3
Q ss_pred CccccccchHHHHHHHHhCCCCCCCCCceEEEEEccCCChHHHHHHHHHcCcccccccc-eEEEEEeCCCCCHHHHHHHH
Q 047321 104 GGVCGRVDEKNELLSKLLCGSSEQQKGLDVISLVGLGGIGKTTLAQLAYNNDEVKRNFE-KVIWVCVSNTFEEISVAKAI 182 (807)
Q Consensus 104 ~~~vGR~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~-~~~wv~~~~~~~~~~~~~~i 182 (807)
.+++|++..++.+.+++... ..+.+.|+|++|+|||++|+.+++... ...+. ..+.++.+.....
T Consensus 17 ~~~~g~~~~~~~l~~~l~~~------~~~~~ll~G~~G~GKt~la~~l~~~l~-~~~~~~~~~~~~~~~~~~~------- 82 (319)
T 2chq_A 17 DEVVGQDEVIQRLKGYVERK------NIPHLLFSGPPGTGKTATAIALARDLF-GENWRDNFIEMNASDERGI------- 82 (319)
T ss_dssp GGSCSCHHHHHHHHTTTTTT------CCCCEEEESSSSSSHHHHHHHHHHHHH-TTCHHHHCEEEETTSTTCT-------
T ss_pred HHHhCCHHHHHHHHHHHhCC------CCCeEEEECcCCcCHHHHHHHHHHHhc-CCcccCCeEEEeCccccCh-------
Confidence 45999999999998887642 333489999999999999999986311 11111 1223333321110
Q ss_pred HHHcCCCCCCCccHHHHHHHHHHH--H-hCCceEEEEeCCCCCCccChHHHHHhhcCCCCCcEEEEEcCCHH-HHHH-hC
Q 047321 183 IEGLGVSAFGLSEFESLMKQIQEY--I-TGKKIFLVLDDVWDGDYKKWDPFFSCLKNGHHESKILITTHDRS-VALQ-LG 257 (807)
Q Consensus 183 ~~~l~~~~~~~~~~~~~~~~l~~~--l-~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~IliTTR~~~-v~~~-~~ 257 (807)
............. + .+++.++|+||+..-.......+...+.....++++|+||.... +... ..
T Consensus 83 -----------~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~~~l~~~l~s 151 (319)
T 2chq_A 83 -----------DVVRHKIKEFARTAPIGGAPFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVSRIIEPIQS 151 (319)
T ss_dssp -----------TTSSHHHHHHHHSCCSSSCCCEEEEEETGGGSCHHHHHTTGGGTSSSSSSEEEEEEESCGGGSCHHHHT
T ss_pred -----------HHHHHHHHHHHhcCCCCCCCceEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCChhhcchHHHh
Confidence 0111111111100 1 25688999999965444444556666655556778888876643 1111 12
Q ss_pred CCceEeCCCCChhhHHHHHHHHHhccCCccCccchHHHHHHHHHHcCCCHHHHHHHH
Q 047321 258 SIDIIPVKELGEGECWLLFKQIAFLRRSFEDCEKLEPIGRKIASKCKGLPLAAKVIG 314 (807)
Q Consensus 258 ~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~~~~I~~~c~glPLai~~~~ 314 (807)
....+++.+++.++...++...+...+.. --.+....|++.++|.+..+....
T Consensus 152 r~~~i~~~~~~~~~~~~~l~~~~~~~~~~----i~~~~l~~l~~~~~G~~r~~~~~l 204 (319)
T 2chq_A 152 RCAVFRFKPVPKEAMKKRLLEICEKEGVK----ITEDGLEALIYISGGDFRKAINAL 204 (319)
T ss_dssp TCEEEECCCCCHHHHHHHHHHHHHTTCCC----BCHHHHHHHHHTTTTCHHHHHHHH
T ss_pred hCeEEEecCCCHHHHHHHHHHHHHHcCCC----CCHHHHHHHHHHcCCCHHHHHHHH
Confidence 24589999999999999998877433221 124567888999999998654433
No 149
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=98.53 E-value=2.1e-07 Score=93.75 Aligned_cols=174 Identities=11% Similarity=0.046 Sum_probs=101.4
Q ss_pred Ccccccc---chHHHHHHHHhCCCCCCCCCceEEEEEccCCChHHHHHHHHHcCcccccccceEEEEEeCCCCCHHHHHH
Q 047321 104 GGVCGRV---DEKNELLSKLLCGSSEQQKGLDVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSNTFEEISVAK 180 (807)
Q Consensus 104 ~~~vGR~---~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~ 180 (807)
.+|+|++ ..++.+..+... ...+.+.|+|++|+||||+|+.+++. .......+.|+.+......
T Consensus 28 ~~~~~~~~~~~~~~~l~~~~~~------~~~~~~ll~G~~G~GKT~la~~l~~~--~~~~~~~~~~~~~~~~~~~----- 94 (242)
T 3bos_A 28 TSYYPAAGNDELIGALKSAASG------DGVQAIYLWGPVKSGRTHLIHAACAR--ANELERRSFYIPLGIHASI----- 94 (242)
T ss_dssp TTSCC--CCHHHHHHHHHHHHT------CSCSEEEEECSTTSSHHHHHHHHHHH--HHHTTCCEEEEEGGGGGGS-----
T ss_pred hhccCCCCCHHHHHHHHHHHhC------CCCCeEEEECCCCCCHHHHHHHHHHH--HHHcCCeEEEEEHHHHHHH-----
Confidence 3577643 445555555542 24568899999999999999999873 3222234556665332110
Q ss_pred HHHHHcCCCCCCCccHHHHHHHHHHHHhCCceEEEEeCCCCCCccC--hHHHHHhhcCC-CCC-cEEEEEcCC-------
Q 047321 181 AIIEGLGVSAFGLSEFESLMKQIQEYITGKKIFLVLDDVWDGDYKK--WDPFFSCLKNG-HHE-SKILITTHD------- 249 (807)
Q Consensus 181 ~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~--~~~l~~~l~~~-~~g-s~IliTTR~------- 249 (807)
+.+. +. . -.++.+||+||++...... .+.+...+... ..+ .++|+||+.
T Consensus 95 -~~~~-----------------~~-~-~~~~~vliiDe~~~~~~~~~~~~~l~~~l~~~~~~~~~~ii~~~~~~~~~~~~ 154 (242)
T 3bos_A 95 -STAL-----------------LE-G-LEQFDLICIDDVDAVAGHPLWEEAIFDLYNRVAEQKRGSLIVSASASPMEAGF 154 (242)
T ss_dssp -CGGG-----------------GT-T-GGGSSEEEEETGGGGTTCHHHHHHHHHHHHHHHHHCSCEEEEEESSCTTTTTC
T ss_pred -HHHH-----------------HH-h-ccCCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCCeEEEEcCCCHHHHHH
Confidence 0000 00 0 1356799999996543222 23344443321 122 247777763
Q ss_pred --HHHHHHhCCCceEeCCCCChhhHHHHHHHHHhccCCccCccchHHHHHHHHHHcCCCHHHHHHHH
Q 047321 250 --RSVALQLGSIDIIPVKELGEGECWLLFKQIAFLRRSFEDCEKLEPIGRKIASKCKGLPLAAKVIG 314 (807)
Q Consensus 250 --~~v~~~~~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~~~~I~~~c~glPLai~~~~ 314 (807)
..+...+.....+++.+++.++..+++...+...+. .--.+....|++.++|.+-.+..+.
T Consensus 155 ~~~~l~~r~~~~~~i~l~~~~~~~~~~~l~~~~~~~~~----~~~~~~~~~l~~~~~g~~r~l~~~l 217 (242)
T 3bos_A 155 VLPDLVSRMHWGLTYQLQPMMDDEKLAALQRRAAMRGL----QLPEDVGRFLLNRMARDLRTLFDVL 217 (242)
T ss_dssp CCHHHHHHHHHSEEEECCCCCGGGHHHHHHHHHHHTTC----CCCHHHHHHHHHHTTTCHHHHHHHH
T ss_pred hhhhhhhHhhcCceEEeCCCCHHHHHHHHHHHHHHcCC----CCCHHHHHHHHHHccCCHHHHHHHH
Confidence 222222222368999999999999999887743221 1224567889999999987765443
No 150
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=98.49 E-value=5e-07 Score=87.29 Aligned_cols=151 Identities=15% Similarity=0.126 Sum_probs=82.5
Q ss_pred CccccccchHHHHHHHHhCCCCCCCCCceEEEEEccCCChHHHHHHHHHcCccc---cc--ccceEEEEEeCCCCCHHHH
Q 047321 104 GGVCGRVDEKNELLSKLLCGSSEQQKGLDVISLVGLGGIGKTTLAQLAYNNDEV---KR--NFEKVIWVCVSNTFEEISV 178 (807)
Q Consensus 104 ~~~vGR~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~---~~--~f~~~~wv~~~~~~~~~~~ 178 (807)
..++||+++++++.+.+.. ...+.+.|+|++|+|||++|+.+++.... .. .....+++.+. ..
T Consensus 22 ~~~~g~~~~~~~l~~~l~~------~~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~ 89 (195)
T 1jbk_A 22 DPVIGRDEEIRRTIQVLQR------RTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDMG------AL 89 (195)
T ss_dssp CCCCSCHHHHHHHHHHHTS------SSSCEEEEECCTTSCHHHHHHHHHHHHHHTCSCGGGTTCEEEEECHH------HH
T ss_pred cccccchHHHHHHHHHHhc------CCCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCcEEEeeHH------HH
Confidence 4699999999999999874 23456889999999999999999873211 00 11223344321 11
Q ss_pred HHHHHHHcCCCCCCCccHHHHHHHHHHHH--hCCceEEEEeCCCCCC--------ccChHHHHHhhcCCCCCcEEEEEcC
Q 047321 179 AKAIIEGLGVSAFGLSEFESLMKQIQEYI--TGKKIFLVLDDVWDGD--------YKKWDPFFSCLKNGHHESKILITTH 248 (807)
Q Consensus 179 ~~~i~~~l~~~~~~~~~~~~~~~~l~~~l--~~k~~LlVlDdv~~~~--------~~~~~~l~~~l~~~~~gs~IliTTR 248 (807)
. .... ...........+.+.+ .+++.+||+||+..-. ......+...+.. . +..+|+||.
T Consensus 90 ~-------~~~~-~~~~~~~~~~~~~~~~~~~~~~~vl~iDe~~~l~~~~~~~~~~~~~~~l~~~~~~-~-~~~~i~~~~ 159 (195)
T 1jbk_A 90 V-------AGAK-YRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKADGAMDAGNMLKPALAR-G-ELHCVGATT 159 (195)
T ss_dssp H-------TTTC-SHHHHHHHHHHHHHHHHHSTTTEEEEEETGGGGTT------CCCCHHHHHHHHHT-T-SCCEEEEEC
T ss_pred h-------ccCC-ccccHHHHHHHHHHHHhhcCCCeEEEEeCHHHHhccCcccchHHHHHHHHHhhcc-C-CeEEEEeCC
Confidence 0 0000 0011111112222212 3568899999995431 1123334433332 2 345677766
Q ss_pred CHHHHHHh-------CCCceEeCCCCChhhHHHHH
Q 047321 249 DRSVALQL-------GSIDIIPVKELGEGECWLLF 276 (807)
Q Consensus 249 ~~~v~~~~-------~~~~~~~l~~L~~~~~~~Lf 276 (807)
........ .....+.+.+++.++..+++
T Consensus 160 ~~~~~~~~~~~~~l~~r~~~i~~~~p~~~~~~~il 194 (195)
T 1jbk_A 160 LDEYRQYIEKDAALERRFQKVFVAEPSVEDTIAIL 194 (195)
T ss_dssp HHHHHHHTTTCHHHHTTEEEEECCCCCHHHHHTTC
T ss_pred HHHHHHHHhcCHHHHHHhceeecCCCCHHHHHHHh
Confidence 55432211 12236788888888776543
No 151
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.45 E-value=7.2e-07 Score=95.70 Aligned_cols=196 Identities=11% Similarity=0.062 Sum_probs=109.6
Q ss_pred CccccccchHHHHHHHH-hCCCCCCCCCceEEEEEccCCChHHHHHHHHHcCc---cccc-ccce---------------
Q 047321 104 GGVCGRVDEKNELLSKL-LCGSSEQQKGLDVISLVGLGGIGKTTLAQLAYNND---EVKR-NFEK--------------- 163 (807)
Q Consensus 104 ~~~vGR~~~~~~l~~~L-~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~---~~~~-~f~~--------------- 163 (807)
.+++|++..++.+..++ ... ....+.|+|++|+||||+|+.++... .... .++.
T Consensus 14 ~~~vg~~~~~~~l~~~~~~~~------~~~~~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~~~~~~~~~~~~~~~ 87 (354)
T 1sxj_E 14 NALSHNEELTNFLKSLSDQPR------DLPHLLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFVTASNRKLELNV 87 (354)
T ss_dssp GGCCSCHHHHHHHHTTTTCTT------CCCCEEEECSTTSSHHHHHHTHHHHHSCTTCCC------------------CC
T ss_pred HHhcCCHHHHHHHHHHHhhCC------CCCeEEEECCCCCCHHHHHHHHHHHHcCCCCCeEEecceeecccccccceeee
Confidence 45899998888888877 322 22238999999999999999886621 0000 0000
Q ss_pred -----EEEEEeCCCC-CHHHHHHHHHHHcCCCCCCCccHHHHHHHHHHHHhCCceEEEEeCCCCCCccChHHHHHhhcCC
Q 047321 164 -----VIWVCVSNTF-EEISVAKAIIEGLGVSAFGLSEFESLMKQIQEYITGKKIFLVLDDVWDGDYKKWDPFFSCLKNG 237 (807)
Q Consensus 164 -----~~wv~~~~~~-~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~ 237 (807)
.+.+..+... ......+++++.+..... ... .. .+. .+.+++-++|+|++..-+......+...+...
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~---~~-~ls-~l~~~~~vlilDE~~~L~~~~~~~L~~~le~~ 161 (354)
T 1sxj_E 88 VSSPYHLEITPSDMGNNDRIVIQELLKEVAQMEQ-VDF---QD-SKD-GLAHRYKCVIINEANSLTKDAQAALRRTMEKY 161 (354)
T ss_dssp EECSSEEEECCC----CCHHHHHHHHHHHTTTTC------------------CCEEEEEECTTSSCHHHHHHHHHHHHHS
T ss_pred ecccceEEecHhhcCCcchHHHHHHHHHHHHhcc-ccc---cc-ccc-ccCCCCeEEEEeCccccCHHHHHHHHHHHHhh
Confidence 1111111100 000012222222211100 000 00 000 02346779999999776666666677777666
Q ss_pred CCCcEEEEEcCCHH-HHH-HhCCCceEeCCCCChhhHHHHHHHHHhccCCccCccchHHHHHHHHHHcCCCHHHHHHHH
Q 047321 238 HHESKILITTHDRS-VAL-QLGSIDIIPVKELGEGECWLLFKQIAFLRRSFEDCEKLEPIGRKIASKCKGLPLAAKVIG 314 (807)
Q Consensus 238 ~~gs~IliTTR~~~-v~~-~~~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~~~~I~~~c~glPLai~~~~ 314 (807)
..+.++|+||++.. +.. .......+++.+++.++....+.+.+...+..-. -.+.+..|++.++|.+-.+..+.
T Consensus 162 ~~~~~~Il~t~~~~~l~~~l~sR~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~---~~~~l~~i~~~~~G~~r~a~~~l 237 (354)
T 1sxj_E 162 SKNIRLIMVCDSMSPIIAPIKSQCLLIRCPAPSDSEISTILSDVVTNERIQLE---TKDILKRIAQASNGNLRVSLLML 237 (354)
T ss_dssp TTTEEEEEEESCSCSSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHHTCEEC---CSHHHHHHHHHHTTCHHHHHHHH
T ss_pred cCCCEEEEEeCCHHHHHHHHHhhceEEecCCcCHHHHHHHHHHHHHHcCCCCC---cHHHHHHHHHHcCCCHHHHHHHH
Confidence 66788888887632 211 1122468999999999999999887744332111 02456889999999987655443
No 152
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=98.45 E-value=3.4e-07 Score=87.15 Aligned_cols=103 Identities=17% Similarity=0.141 Sum_probs=72.8
Q ss_pred ccccccCCCccccchhhhccccCCCCCCcccEEEEccCCCCCCC-cccccCCCCccEEeeccCccccccccccccc-CCC
Q 047321 680 KSLEIDGMKELEEWNYRITRKENISIMPRLSSLQIMNCRKLKAL-PDYLLQTIALQKLSIYSCDLLEELPILEDRR-TTD 757 (807)
Q Consensus 680 ~~L~l~~~~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~l-p~~l~~l~~L~~L~l~~c~~l~~lP~~~~~~-~~~ 757 (807)
+.+++++ ..+..+|. . ..++|+.|+++++ .+..+ |..+..+++|+.|+|+++ .+..+| .. +..
T Consensus 15 ~~l~~~~-n~l~~iP~------~--~~~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~i~----~~~~~~ 79 (174)
T 2r9u_A 15 TLVNCQN-IRLASVPA------G--IPTDKQRLWLNNN-QITKLEPGVFDHLVNLQQLYFNSN-KLTAIP----TGVFDK 79 (174)
T ss_dssp SEEECCS-SCCSSCCS------C--CCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS-CCCCCC----TTTTTT
T ss_pred cEEEeCC-CCCCccCC------C--cCCCCcEEEeCCC-CccccCHHHhcCCcCCCEEECCCC-CCCccC----hhHhCC
Confidence 4566655 35556554 2 2378888888887 56666 556778888888888885 677776 33 467
Q ss_pred CCCCCeeeeccCCCcccCCcc-CCCCCcccccccccchhhhh
Q 047321 758 IPRLSSLAIWYCPKLKVLPDY-LLRTTTLQAGEQDYENEKFS 798 (807)
Q Consensus 758 l~~L~~L~i~~c~~l~~lP~~-l~~l~~L~~L~l~~~~~~~~ 798 (807)
+++|+.|++++ +.++.+|.. +.++++|+.|++++|++...
T Consensus 80 l~~L~~L~L~~-N~l~~l~~~~~~~l~~L~~L~L~~N~~~c~ 120 (174)
T 2r9u_A 80 LTQLTQLDLND-NHLKSIPRGAFDNLKSLTHIYLYNNPWDCE 120 (174)
T ss_dssp CTTCCEEECCS-SCCCCCCTTTTTTCTTCSEEECCSSCBCTT
T ss_pred cchhhEEECCC-CccceeCHHHhccccCCCEEEeCCCCcccc
Confidence 88888888886 457777754 77888888888888877644
No 153
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=98.44 E-value=3.7e-07 Score=86.57 Aligned_cols=106 Identities=17% Similarity=0.168 Sum_probs=78.4
Q ss_pred ccccccccCCCccccchhhhccccCCCCCCcccEEEEccCCCCCCC-cccccCCCCccEEeeccCcccccccccccccCC
Q 047321 678 KLKSLEIDGMKELEEWNYRITRKENISIMPRLSSLQIMNCRKLKAL-PDYLLQTIALQKLSIYSCDLLEELPILEDRRTT 756 (807)
Q Consensus 678 ~L~~L~l~~~~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~l-p~~l~~l~~L~~L~l~~c~~l~~lP~~~~~~~~ 756 (807)
+.+.|++++ ..+..+|. . ..++|+.|+++++ .++.+ |..+..+++|++|+++++ .+..+|. ..+.
T Consensus 10 ~~~~l~~s~-n~l~~ip~------~--~~~~l~~L~L~~N-~i~~~~~~~~~~l~~L~~L~Ls~N-~l~~l~~---~~f~ 75 (170)
T 3g39_A 10 SGTTVDCSG-KSLASVPT------G--IPTTTQVLYLYDN-QITKLEPGVFDRLTQLTRLDLDNN-QLTVLPA---GVFD 75 (170)
T ss_dssp ETTEEECTT-SCCSSCCS------C--CCTTCSEEECCSS-CCCCCCTTTTTTCTTCSEEECCSS-CCCCCCT---TTTT
T ss_pred CCCEEEeCC-CCcCccCc------c--CCCCCcEEEcCCC-cCCccChhhhcCcccCCEEECCCC-CcCccCh---hhcc
Confidence 456777776 45666654 2 2478889999888 67777 556788889999999885 6777761 3357
Q ss_pred CCCCCCeeeeccCCCcccCCc-cCCCCCcccccccccchhhhh
Q 047321 757 DIPRLSSLAIWYCPKLKVLPD-YLLRTTTLQAGEQDYENEKFS 798 (807)
Q Consensus 757 ~l~~L~~L~i~~c~~l~~lP~-~l~~l~~L~~L~l~~~~~~~~ 798 (807)
.+++|++|++++ +.++.+|. .+.++++|+.|++++|++...
T Consensus 76 ~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~ 117 (170)
T 3g39_A 76 KLTQLTQLSLND-NQLKSIPRGAFDNLKSLTHIWLLNNPWDCA 117 (170)
T ss_dssp TCTTCCEEECCS-SCCCCCCTTTTTTCTTCCEEECCSSCBCTT
T ss_pred CCCCCCEEECCC-CccCEeCHHHhcCCCCCCEEEeCCCCCCCC
Confidence 888899999987 46777775 578888999999998877544
No 154
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.44 E-value=2.3e-06 Score=91.58 Aligned_cols=194 Identities=11% Similarity=0.042 Sum_probs=113.4
Q ss_pred CccccccchHHHHHHHHhCCCCCCCCCceEEEEEccCCChHHHHHHHHHcCcccccccc-eEEEEEeCCCCCHHHHHHHH
Q 047321 104 GGVCGRVDEKNELLSKLLCGSSEQQKGLDVISLVGLGGIGKTTLAQLAYNNDEVKRNFE-KVIWVCVSNTFEEISVAKAI 182 (807)
Q Consensus 104 ~~~vGR~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~-~~~wv~~~~~~~~~~~~~~i 182 (807)
.+++|+++.++.+..++.... .+.+.|+|++|+||||+|+.+++.......+. ..+.++.+.......+ .+.
T Consensus 37 ~~i~g~~~~~~~l~~~l~~~~------~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 109 (353)
T 1sxj_D 37 DEVTAQDHAVTVLKKTLKSAN------LPHMLFYGPPGTGKTSTILALTKELYGPDLMKSRILELNASDERGISIV-REK 109 (353)
T ss_dssp TTCCSCCTTHHHHHHHTTCTT------CCCEEEECSTTSSHHHHHHHHHHHHHHHHHHTTSEEEECSSSCCCHHHH-TTH
T ss_pred HHhhCCHHHHHHHHHHHhcCC------CCEEEEECCCCCCHHHHHHHHHHHhCCCcccccceEEEccccccchHHH-HHH
Confidence 469999999999999987432 23389999999999999999987321111111 1233333332232222 111
Q ss_pred HHHcCCC-CCCCccHHHHHHHHHHHHhCCceEEEEeCCCCCCccChHHHHHhhcCCCCCcEEEEEcCCHH-HHHHh-CCC
Q 047321 183 IEGLGVS-AFGLSEFESLMKQIQEYITGKKIFLVLDDVWDGDYKKWDPFFSCLKNGHHESKILITTHDRS-VALQL-GSI 259 (807)
Q Consensus 183 ~~~l~~~-~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~IliTTR~~~-v~~~~-~~~ 259 (807)
+..+... ....... .....-.+++-++++|++..-.......+...+.......++|++|.... +...+ ...
T Consensus 110 ~~~~~~~~~~~~~~~-----~~~~~~~~~~~vliiDE~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~l~~~l~sR~ 184 (353)
T 1sxj_D 110 VKNFARLTVSKPSKH-----DLENYPCPPYKIIILDEADSMTADAQSALRRTMETYSGVTRFCLICNYVTRIIDPLASQC 184 (353)
T ss_dssp HHHHHHSCCCCCCTT-----HHHHSCCCSCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHHHS
T ss_pred HHHHhhhcccccchh-----hcccCCCCCceEEEEECCCccCHHHHHHHHHHHHhcCCCceEEEEeCchhhCcchhhccC
Confidence 1111100 0000000 00000123556999999865554555667777766656677777775432 11111 112
Q ss_pred ceEeCCCCChhhHHHHHHHHHhccCCccCccchHHHHHHHHHHcCCCHHHHHHH
Q 047321 260 DIIPVKELGEGECWLLFKQIAFLRRSFEDCEKLEPIGRKIASKCKGLPLAAKVI 313 (807)
Q Consensus 260 ~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~~~~I~~~c~glPLai~~~ 313 (807)
..+.+.+++.++....+...+...+. . --.+....|++.++|.|..+..+
T Consensus 185 ~~i~~~~~~~~~~~~~l~~~~~~~~~-~---i~~~~l~~l~~~~~G~~r~~~~~ 234 (353)
T 1sxj_D 185 SKFRFKALDASNAIDRLRFISEQENV-K---CDDGVLERILDISAGDLRRGITL 234 (353)
T ss_dssp EEEECCCCCHHHHHHHHHHHHHTTTC-C---CCHHHHHHHHHHTSSCHHHHHHH
T ss_pred ceEEeCCCCHHHHHHHHHHHHHHhCC-C---CCHHHHHHHHHHcCCCHHHHHHH
Confidence 47899999999999999887643221 1 12456789999999999865443
No 155
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=98.41 E-value=5.1e-06 Score=91.21 Aligned_cols=179 Identities=19% Similarity=0.164 Sum_probs=103.9
Q ss_pred CccccccchH---HHHHHHHhCCCCCCCCCceEEEEEccCCChHHHHHHHHHcCcccccccceEEEEEeCCC-CCHHHHH
Q 047321 104 GGVCGRVDEK---NELLSKLLCGSSEQQKGLDVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSNT-FEEISVA 179 (807)
Q Consensus 104 ~~~vGR~~~~---~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~-~~~~~~~ 179 (807)
.++||.+..+ ..+...+.. .....+.|+|++|+||||+|+.+++. ....| +.++.. ..... .
T Consensus 26 ~~ivGq~~~~~~~~~L~~~i~~------~~~~~vLL~GppGtGKTtlAr~ia~~--~~~~f-----~~l~a~~~~~~~-i 91 (447)
T 3pvs_A 26 AQYIGQQHLLAAGKPLPRAIEA------GHLHSMILWGPPGTGKTTLAEVIARY--ANADV-----ERISAVTSGVKE-I 91 (447)
T ss_dssp TTCCSCHHHHSTTSHHHHHHHH------TCCCEEEEECSTTSSHHHHHHHHHHH--TTCEE-----EEEETTTCCHHH-H
T ss_pred HHhCCcHHHHhchHHHHHHHHc------CCCcEEEEECCCCCcHHHHHHHHHHH--hCCCe-----EEEEeccCCHHH-H
Confidence 4588888777 666666653 34578999999999999999999973 32222 222211 11111 1
Q ss_pred HHHHHHcCCCCCCCccHHHHHHHHH-HHHhCCceEEEEeCCCCCCccChHHHHHhhcCCCCCcEEEEEcCCHH--HH-HH
Q 047321 180 KAIIEGLGVSAFGLSEFESLMKQIQ-EYITGKKIFLVLDDVWDGDYKKWDPFFSCLKNGHHESKILITTHDRS--VA-LQ 255 (807)
Q Consensus 180 ~~i~~~l~~~~~~~~~~~~~~~~l~-~~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~IliTTR~~~--v~-~~ 255 (807)
+. ...... ....+++.+|++|++..-.....+.+...+..+ .-.-|..||.+.. +. ..
T Consensus 92 r~-----------------~~~~a~~~~~~~~~~iLfIDEI~~l~~~~q~~LL~~le~~-~v~lI~att~n~~~~l~~aL 153 (447)
T 3pvs_A 92 RE-----------------AIERARQNRNAGRRTILFVDEVHRFNKSQQDAFLPHIEDG-TITFIGATTENPSFELNSAL 153 (447)
T ss_dssp HH-----------------HHHHHHHHHHTTCCEEEEEETTTCC------CCHHHHHTT-SCEEEEEESSCGGGSSCHHH
T ss_pred HH-----------------HHHHHHHhhhcCCCcEEEEeChhhhCHHHHHHHHHHHhcC-ceEEEecCCCCcccccCHHH
Confidence 11 111111 112467899999999776555556666666553 2222334555542 11 11
Q ss_pred hCCCceEeCCCCChhhHHHHHHHHHhccCCc---cCccchHHHHHHHHHHcCCCHHHHHHHH
Q 047321 256 LGSIDIIPVKELGEGECWLLFKQIAFLRRSF---EDCEKLEPIGRKIASKCKGLPLAAKVIG 314 (807)
Q Consensus 256 ~~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~---~~~~~~~~~~~~I~~~c~glPLai~~~~ 314 (807)
.....++.+++++.++...++.+.+-..... ....--.+....|++.++|.+-.+..+.
T Consensus 154 ~sR~~v~~l~~l~~edi~~il~~~l~~~~~~~~~~~~~i~~~al~~L~~~~~Gd~R~lln~L 215 (447)
T 3pvs_A 154 LSRARVYLLKSLSTEDIEQVLTQAMEDKTRGYGGQDIVLPDETRRAIAELVNGDARRALNTL 215 (447)
T ss_dssp HTTEEEEECCCCCHHHHHHHHHHHHHCTTTSSTTSSEECCHHHHHHHHHHHCSCHHHHHHHH
T ss_pred hCceeEEeeCCcCHHHHHHHHHHHHHHHhhhhccccCcCCHHHHHHHHHHCCCCHHHHHHHH
Confidence 2234588999999999999998876431110 1112235567888899999887655433
No 156
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=98.37 E-value=5.7e-06 Score=88.01 Aligned_cols=176 Identities=16% Similarity=0.147 Sum_probs=107.0
Q ss_pred CccccccchHHHHHHHHhCCCCCCCCCceEEEEEccCCChHHHHHHHHHcCcccccccceEEEEEeCCCCCHHHHHHHHH
Q 047321 104 GGVCGRVDEKNELLSKLLCGSSEQQKGLDVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSNTFEEISVAKAII 183 (807)
Q Consensus 104 ~~~vGR~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 183 (807)
.+++|++..++.+..++...... ......|.|+|++|+|||++|+.+++. ....| +.++.......
T Consensus 29 ~~iiG~~~~~~~l~~~l~~~~~~-~~~~~~vll~G~~GtGKT~la~~ia~~--~~~~~---~~~~~~~~~~~-------- 94 (338)
T 3pfi_A 29 DGYIGQESIKKNLNVFIAAAKKR-NECLDHILFSGPAGLGKTTLANIISYE--MSANI---KTTAAPMIEKS-------- 94 (338)
T ss_dssp GGCCSCHHHHHHHHHHHHHHHHT-TSCCCCEEEECSTTSSHHHHHHHHHHH--TTCCE---EEEEGGGCCSH--------
T ss_pred HHhCChHHHHHHHHHHHHHHHhc-CCCCCeEEEECcCCCCHHHHHHHHHHH--hCCCe---EEecchhccch--------
Confidence 46999999999998888643100 123456899999999999999999862 22222 22332211111
Q ss_pred HHcCCCCCCCccHHHHHHHHHHHHhCCceEEEEeCCCCCCccChHHHHHhhcCCC------------------CCcEEEE
Q 047321 184 EGLGVSAFGLSEFESLMKQIQEYITGKKIFLVLDDVWDGDYKKWDPFFSCLKNGH------------------HESKILI 245 (807)
Q Consensus 184 ~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~------------------~gs~Ili 245 (807)
......+.. ..+..+|++|++..-.......+...+.... ++..+|.
T Consensus 95 -------------~~~~~~~~~--~~~~~vl~lDEi~~l~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 159 (338)
T 3pfi_A 95 -------------GDLAAILTN--LSEGDILFIDEIHRLSPAIEEVLYPAMEDYRLDIIIGSGPAAQTIKIDLPKFTLIG 159 (338)
T ss_dssp -------------HHHHHHHHT--CCTTCEEEEETGGGCCHHHHHHHHHHHHTSCC---------CCCCCCCCCCCEEEE
T ss_pred -------------hHHHHHHHh--ccCCCEEEEechhhcCHHHHHHHHHHHHhccchhhcccCccccceecCCCCeEEEE
Confidence 111111111 2467899999996555444455665554432 1245666
Q ss_pred EcCCHH-----HHHHhCCCceEeCCCCChhhHHHHHHHHHhccCCccCccchHHHHHHHHHHcCCCHHHHHHHH
Q 047321 246 TTHDRS-----VALQLGSIDIIPVKELGEGECWLLFKQIAFLRRSFEDCEKLEPIGRKIASKCKGLPLAAKVIG 314 (807)
Q Consensus 246 TTR~~~-----v~~~~~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~~~~I~~~c~glPLai~~~~ 314 (807)
+|.... +... ....+.+.+++.++...++.+.+-..+. .--.+....|++.+.|.|-.+..+.
T Consensus 160 atn~~~~l~~~L~~R--~~~~i~l~~~~~~e~~~il~~~~~~~~~----~~~~~~~~~l~~~~~G~~r~l~~~l 227 (338)
T 3pfi_A 160 ATTRAGMLSNPLRDR--FGMQFRLEFYKDSELALILQKAALKLNK----TCEEKAALEIAKRSRSTPRIALRLL 227 (338)
T ss_dssp EESCGGGSCHHHHTT--CSEEEECCCCCHHHHHHHHHHHHHHTTC----EECHHHHHHHHHTTTTCHHHHHHHH
T ss_pred eCCCccccCHHHHhh--cCEEeeCCCcCHHHHHHHHHHHHHhcCC----CCCHHHHHHHHHHHCcCHHHHHHHH
Confidence 665432 2211 1257999999999999999887643221 1224567888999999996555443
No 157
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=98.35 E-value=2.4e-06 Score=94.00 Aligned_cols=182 Identities=16% Similarity=0.112 Sum_probs=108.2
Q ss_pred ceEEEEEccCCChHHHHHHHHHcCcccccccc--eEEEEEeCCCCCHHHHHHHHHHHcCCCCCCCccHHHHHHHHHHHHh
Q 047321 131 LDVISLVGLGGIGKTTLAQLAYNNDEVKRNFE--KVIWVCVSNTFEEISVAKAIIEGLGVSAFGLSEFESLMKQIQEYIT 208 (807)
Q Consensus 131 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~--~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 208 (807)
...+.|+|++|+||||||+.+++ .....+. .+++++. ..+...+...+... . ...+...+.
T Consensus 130 ~~~lll~Gp~G~GKTtLa~aia~--~l~~~~~~~~v~~v~~------~~~~~~~~~~~~~~-----~----~~~~~~~~~ 192 (440)
T 2z4s_A 130 YNPLFIYGGVGLGKTHLLQSIGN--YVVQNEPDLRVMYITS------EKFLNDLVDSMKEG-----K----LNEFREKYR 192 (440)
T ss_dssp SCCEEEECSSSSSHHHHHHHHHH--HHHHHCCSSCEEEEEH------HHHHHHHHHHHHTT-----C----HHHHHHHHT
T ss_pred CCeEEEECCCCCCHHHHHHHHHH--HHHHhCCCCeEEEeeH------HHHHHHHHHHHHcc-----c----HHHHHHHhc
Confidence 67899999999999999999987 3333321 2345443 22333444433221 1 112333344
Q ss_pred CCceEEEEeCCCCCCc--cChHHHHHhhcC-CCCCcEEEEEcCC---------HHHHHHhCCCceEeCCCCChhhHHHHH
Q 047321 209 GKKIFLVLDDVWDGDY--KKWDPFFSCLKN-GHHESKILITTHD---------RSVALQLGSIDIIPVKELGEGECWLLF 276 (807)
Q Consensus 209 ~k~~LlVlDdv~~~~~--~~~~~l~~~l~~-~~~gs~IliTTR~---------~~v~~~~~~~~~~~l~~L~~~~~~~Lf 276 (807)
.++.+|++||++.... ...+.+...+.. ...|..||+||++ ..+...+.....+.+.+++.++..+++
T Consensus 193 ~~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~~~~iIitt~~~~~~l~~l~~~L~sR~~~g~~i~l~~p~~e~r~~iL 272 (440)
T 2z4s_A 193 KKVDILLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPDEETRKSIA 272 (440)
T ss_dssp TTCSEEEEECGGGGSSCHHHHHHHHHHHHHHHTTTCEEEEEESSCGGGCSSCCHHHHHHHHSSBCCBCCCCCHHHHHHHH
T ss_pred CCCCEEEEeCcccccCChHHHHHHHHHHHHHHHCCCeEEEEECCCHHHHHHHHHHHHhhccCCeEEEeCCCCHHHHHHHH
Confidence 4678999999965322 223335444432 2456788888886 233343433457899999999999999
Q ss_pred HHHHhccCCccCccchHHHHHHHHHHcCCCHHHHHHHHHHh------hcC-CCHHHHHHHHhcc
Q 047321 277 KQIAFLRRSFEDCEKLEPIGRKIASKCKGLPLAAKVIGNLL------RSK-NTAKEWHIILDSE 333 (807)
Q Consensus 277 ~~~a~~~~~~~~~~~~~~~~~~I~~~c~glPLai~~~~~~l------~~~-~~~~~w~~~~~~~ 333 (807)
.+.+...+. ..+ .++...|++.++|.+-.+..+...+ .++ -+.+.++.++...
T Consensus 273 ~~~~~~~~~-~i~---~e~l~~la~~~~gn~R~l~~~L~~~~~~a~~~~~~It~~~~~~~l~~~ 332 (440)
T 2z4s_A 273 RKMLEIEHG-ELP---EEVLNFVAENVDDNLRRLRGAIIKLLVYKETTGKEVDLKEAILLLKDF 332 (440)
T ss_dssp HHHHHHHTC-CCC---TTHHHHHHHHCCSCHHHHHHHHHHHHHHHHHSSSCCCHHHHHHHTSTT
T ss_pred HHHHHHcCC-CCC---HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHH
Confidence 988743222 112 2346788999999986554332211 122 2566677666543
No 158
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=98.35 E-value=4.7e-06 Score=86.27 Aligned_cols=186 Identities=17% Similarity=0.058 Sum_probs=102.9
Q ss_pred CCccccccchHHHHHHHHhCCCCC-------CCCCceEEEEEccCCChHHHHHHHHHcCcccccccceEEEEEeCCCCCH
Q 047321 103 EGGVCGRVDEKNELLSKLLCGSSE-------QQKGLDVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSNTFEE 175 (807)
Q Consensus 103 ~~~~vGR~~~~~~l~~~L~~~~~~-------~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~ 175 (807)
-.+++|.++.+++|.+.+...... +....+.+.|+|++|+|||++|+.+++. ....| +.+..+.-.
T Consensus 16 ~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la~~la~~--~~~~~---~~v~~~~~~-- 88 (285)
T 3h4m_A 16 YEDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVATE--TNATF---IRVVGSELV-- 88 (285)
T ss_dssp GGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHHHHHHHH--TTCEE---EEEEGGGGC--
T ss_pred HHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHH--hCCCE---EEEehHHHH--
Confidence 356999999999998877431000 0024456999999999999999999873 22222 222221110
Q ss_pred HHHHHHHHHHcCCCCCCCccHHHHHHHHHHHHhCCceEEEEeCCCCC-----------CccChHHHHHhhc-----CCCC
Q 047321 176 ISVAKAIIEGLGVSAFGLSEFESLMKQIQEYITGKKIFLVLDDVWDG-----------DYKKWDPFFSCLK-----NGHH 239 (807)
Q Consensus 176 ~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~-----------~~~~~~~l~~~l~-----~~~~ 239 (807)
... ...........+.......+.+|++||+..- +......+...+. ....
T Consensus 89 ------------~~~-~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~ 155 (285)
T 3h4m_A 89 ------------KKF-IGEGASLVKDIFKLAKEKAPSIIFIDEIDAIAAKRTDALTGGDREVQRTLMQLLAEMDGFDARG 155 (285)
T ss_dssp ------------CCS-TTHHHHHHHHHHHHHHHTCSEEEEEETTHHHHBCCSSSCCGGGGHHHHHHHHHHHHHHTTCSSS
T ss_pred ------------Hhc-cchHHHHHHHHHHHHHHcCCeEEEEECHHHhcccCccccCCccHHHHHHHHHHHHHhhCCCCCC
Confidence 000 0111122222333344567789999999431 1111122333322 1234
Q ss_pred CcEEEEEcCCHHH-----HHHhCCCceEeCCCCChhhHHHHHHHHHhccCCccCccchHHHHHHHHHHcCC-CHHHHHHH
Q 047321 240 ESKILITTHDRSV-----ALQLGSIDIIPVKELGEGECWLLFKQIAFLRRSFEDCEKLEPIGRKIASKCKG-LPLAAKVI 313 (807)
Q Consensus 240 gs~IliTTR~~~v-----~~~~~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~~~~I~~~c~g-lPLai~~~ 313 (807)
+..||.||..... .....-...+.++..+.++..+++...+..... ..... ...+++.+.| .|-.|..+
T Consensus 156 ~~~vI~ttn~~~~l~~~l~~~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~-~~~~~----~~~l~~~~~g~~~~~i~~l 230 (285)
T 3h4m_A 156 DVKIIGATNRPDILDPAILRPGRFDRIIEVPAPDEKGRLEILKIHTRKMNL-AEDVN----LEEIAKMTEGCVGAELKAI 230 (285)
T ss_dssp SEEEEEECSCGGGBCHHHHSTTSEEEEEECCCCCHHHHHHHHHHHHTTSCB-CTTCC----HHHHHHHCTTCCHHHHHHH
T ss_pred CEEEEEeCCCchhcCHHHcCCCcCCeEEEECCCCHHHHHHHHHHHHhcCCC-CCcCC----HHHHHHHcCCCCHHHHHHH
Confidence 5677778875422 110011237899999999999999887643322 11222 3667777777 56455443
No 159
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=98.32 E-value=2.2e-09 Score=105.05 Aligned_cols=131 Identities=14% Similarity=0.161 Sum_probs=83.9
Q ss_pred CCCcc-cceEeccCCcCceeeCcccCCCCCCCCCCCCCCCCCCccccCcccccccccCCCccccchhhhccccCCCCCCc
Q 047321 630 LGKLP-LKKLELRDLESVKRVGNEFLGIEESSEDDPSSSSSSPSVIAFPKLKSLEIDGMKELEEWNYRITRKENISIMPR 708 (807)
Q Consensus 630 l~~L~-L~~L~L~~~~~l~~i~~~~~~~~~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~l~~ 708 (807)
++.++ |++|+++++. ++.++ . +..+++|+.|+++++ .+..++. .+..+++
T Consensus 44 ~~~l~~L~~L~ls~n~-l~~l~-~--------------------~~~l~~L~~L~l~~n-~l~~l~~------~~~~~~~ 94 (198)
T 1ds9_A 44 LSTLKACKHLALSTNN-IEKIS-S--------------------LSGMENLRILSLGRN-LIKKIEN------LDAVADT 94 (198)
T ss_dssp HHHTTTCSEEECSEEE-ESCCC-C--------------------HHHHTTCCEEEEEEE-EECSCSS------HHHHHHH
T ss_pred HhcCCCCCEEECCCCC-Ccccc-c--------------------cccCCCCCEEECCCC-Ccccccc------hhhcCCc
Confidence 55667 7888877643 44333 1 346778888888774 4554443 2234578
Q ss_pred ccEEEEccCCCCCCCcccccCCCCccEEeeccCcccccccccccccCCCCCCCCeeeeccCCCcccCCc----------c
Q 047321 709 LSSLQIMNCRKLKALPDYLLQTIALQKLSIYSCDLLEELPILEDRRTTDIPRLSSLAIWYCPKLKVLPD----------Y 778 (807)
Q Consensus 709 L~~L~l~~c~~L~~lp~~l~~l~~L~~L~l~~c~~l~~lP~~~~~~~~~l~~L~~L~i~~c~~l~~lP~----------~ 778 (807)
|+.|++++| .+..+| .+..+++|+.|++++| .+..+|.+ ..+..+++|++|++++|+.....|. .
T Consensus 95 L~~L~L~~N-~l~~l~-~~~~l~~L~~L~l~~N-~i~~~~~~--~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~ 169 (198)
T 1ds9_A 95 LEELWISYN-QIASLS-GIEKLVNLRVLYMSNN-KITNWGEI--DKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEV 169 (198)
T ss_dssp CSEEEEEEE-ECCCHH-HHHHHHHSSEEEESEE-ECCCHHHH--HHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHH
T ss_pred CCEEECcCC-cCCcCC-ccccCCCCCEEECCCC-cCCchhHH--HHHhcCCCCCEEEecCCccccccccccchHHHHHHH
Confidence 888888887 677777 5677788888888875 46655411 2456788888888887654333333 2
Q ss_pred CCCCCcccccccccchhh
Q 047321 779 LLRTTTLQAGEQDYENEK 796 (807)
Q Consensus 779 l~~l~~L~~L~l~~~~~~ 796 (807)
+.++++|+.|| ++++.
T Consensus 170 ~~~l~~L~~Ld--~~~i~ 185 (198)
T 1ds9_A 170 VKRLPNLKKLD--GMPVD 185 (198)
T ss_dssp HHHCSSCSEEC--CGGGT
T ss_pred HHhCCCcEEEC--CcccC
Confidence 66777888776 55553
No 160
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.28 E-value=3.5e-06 Score=94.85 Aligned_cols=196 Identities=15% Similarity=0.157 Sum_probs=110.6
Q ss_pred CccccccchHHHHHHHHhCCCC-----------CCCCCceEEEEEccCCChHHHHHHHHHcCcccccccceEEEEEeCCC
Q 047321 104 GGVCGRVDEKNELLSKLLCGSS-----------EQQKGLDVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSNT 172 (807)
Q Consensus 104 ~~~vGR~~~~~~l~~~L~~~~~-----------~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~ 172 (807)
.+++|+++.++++.+++..... .+....+.+.|+|++|+||||+|+.+++. . .+ ..+.++.+..
T Consensus 39 ~dliG~~~~~~~L~~~l~~~~~~~~~~~~~~g~~~~~~~~~lLL~GppGtGKTtla~~la~~--l--~~-~~i~in~s~~ 113 (516)
T 1sxj_A 39 QQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQE--L--GY-DILEQNASDV 113 (516)
T ss_dssp GGCCSCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHHH--T--TC-EEEEECTTSC
T ss_pred HHhcCCHHHHHHHHHHHHHhHhhchhhccccCccCCCCCcEEEEECCCCCCHHHHHHHHHHH--c--CC-CEEEEeCCCc
Confidence 4699999999999999875110 00123578999999999999999999873 2 12 2334444444
Q ss_pred CCHHHHHHHHHHHcCCC-CC-CC-ccHHHHHHHHHHHHhCCceEEEEeCCCCCCc---cChHHHHHhhcCCCCCcEEEEE
Q 047321 173 FEEISVAKAIIEGLGVS-AF-GL-SEFESLMKQIQEYITGKKIFLVLDDVWDGDY---KKWDPFFSCLKNGHHESKILIT 246 (807)
Q Consensus 173 ~~~~~~~~~i~~~l~~~-~~-~~-~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~---~~~~~l~~~l~~~~~gs~IliT 246 (807)
.... .....+...... .. +. ..... .....+++.+||+||+..-.. ..+..+...+... +..||++
T Consensus 114 ~~~~-~~~~~i~~~~~~~~~~~~~~~~~~-----~~~~~~~~~vliIDEid~l~~~~~~~l~~L~~~l~~~--~~~iIli 185 (516)
T 1sxj_A 114 RSKT-LLNAGVKNALDNMSVVGYFKHNEE-----AQNLNGKHFVIIMDEVDGMSGGDRGGVGQLAQFCRKT--STPLILI 185 (516)
T ss_dssp CCHH-HHHHTGGGGTTBCCSTTTTTC---------CCSSTTSEEEEECSGGGCCTTSTTHHHHHHHHHHHC--SSCEEEE
T ss_pred chHH-HHHHHHHHHhccccHHHHHhhhhh-----hhhccCCCeEEEEECCCccchhhHHHHHHHHHHHHhc--CCCEEEE
Confidence 4433 222222222111 00 00 00000 000135788999999954322 1234455554432 2235555
Q ss_pred cCCHH---HHHHhCCCceEeCCCCChhhHHHHHHHHHhccCCccCccchHHHHHHHHHHcCCC-HHHHHHHHHH
Q 047321 247 THDRS---VALQLGSIDIIPVKELGEGECWLLFKQIAFLRRSFEDCEKLEPIGRKIASKCKGL-PLAAKVIGNL 316 (807)
Q Consensus 247 TR~~~---v~~~~~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~~~~I~~~c~gl-PLai~~~~~~ 316 (807)
+.+.. +.........+.+++++.++..+++...+...+..-. .+....|++.++|. +-++..+...
T Consensus 186 ~~~~~~~~l~~l~~r~~~i~f~~~~~~~~~~~L~~i~~~~~~~i~----~~~l~~la~~s~GdiR~~i~~L~~~ 255 (516)
T 1sxj_A 186 CNERNLPKMRPFDRVCLDIQFRRPDANSIKSRLMTIAIREKFKLD----PNVIDRLIQTTRGDIRQVINLLSTI 255 (516)
T ss_dssp ESCTTSSTTGGGTTTSEEEECCCCCHHHHHHHHHHHHHHHTCCCC----TTHHHHHHHHTTTCHHHHHHHHTHH
T ss_pred EcCCCCccchhhHhceEEEEeCCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCcHHHHHHHHHHH
Confidence 44322 2111122457899999999999999887754432211 23467889999994 5556655443
No 161
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=98.28 E-value=3.3e-06 Score=80.53 Aligned_cols=110 Identities=15% Similarity=0.208 Sum_probs=84.1
Q ss_pred c-cceEeccCCcCceeeCcccCCCCCCCCCCCCCCCCCCccccCcccccccccCCCccccchhhhccccCCCCCCcccEE
Q 047321 634 P-LKKLELRDLESVKRVGNEFLGIEESSEDDPSSSSSSPSVIAFPKLKSLEIDGMKELEEWNYRITRKENISIMPRLSSL 712 (807)
Q Consensus 634 ~-L~~L~L~~~~~l~~i~~~~~~~~~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~l~~L~~L 712 (807)
+ |+.|+++++. ++.++... +..+++|+.|+++++ .+..++. ..+..+++|+.|
T Consensus 28 ~~l~~L~l~~n~-l~~~~~~~-------------------~~~l~~L~~L~l~~n-~l~~~~~-----~~~~~l~~L~~L 81 (177)
T 2o6r_A 28 SSATRLELESNK-LQSLPHGV-------------------FDKLTQLTKLSLSQN-QIQSLPD-----GVFDKLTKLTIL 81 (177)
T ss_dssp TTCSEEECCSSC-CCCCCTTT-------------------TTTCTTCSEEECCSS-CCCCCCT-----TTTTTCTTCCEE
T ss_pred CCCcEEEeCCCc-ccEeCHHH-------------------hcCcccccEEECCCC-cceEeCh-----hHccCCCccCEE
Confidence 5 9999998854 55444321 347899999999985 6766654 345689999999
Q ss_pred EEccCCCCCCCccc-ccCCCCccEEeeccCcccccccccccccCCCCCCCCeeeeccCCCccc
Q 047321 713 QIMNCRKLKALPDY-LLQTIALQKLSIYSCDLLEELPILEDRRTTDIPRLSSLAIWYCPKLKV 774 (807)
Q Consensus 713 ~l~~c~~L~~lp~~-l~~l~~L~~L~l~~c~~l~~lP~~~~~~~~~l~~L~~L~i~~c~~l~~ 774 (807)
+++++ +++.+|.. +..+++|+.|+++++ .+..+|. ..+..+++|++|++++++....
T Consensus 82 ~l~~N-~l~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~---~~~~~l~~L~~L~l~~N~~~~~ 139 (177)
T 2o6r_A 82 YLHEN-KLQSLPNGVFDKLTQLKELALDTN-QLKSVPD---GIFDRLTSLQKIWLHTNPWDCS 139 (177)
T ss_dssp ECCSS-CCCCCCTTTTTTCTTCCEEECCSS-CCSCCCT---TTTTTCTTCCEEECCSSCBCCC
T ss_pred ECCCC-CccccCHHHhhCCcccCEEECcCC-cceEeCH---HHhcCCcccCEEEecCCCeecc
Confidence 99998 78888765 678999999999996 6778871 2357799999999998765433
No 162
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=98.26 E-value=2.2e-05 Score=80.03 Aligned_cols=188 Identities=13% Similarity=0.049 Sum_probs=100.2
Q ss_pred CccccccchHHHHHHHH---hCCCCC---CCCCceEEEEEccCCChHHHHHHHHHcCcccccccceEEEEEeCCCCCHHH
Q 047321 104 GGVCGRVDEKNELLSKL---LCGSSE---QQKGLDVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSNTFEEIS 177 (807)
Q Consensus 104 ~~~vGR~~~~~~l~~~L---~~~~~~---~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~ 177 (807)
.+++|.++.++.+.+.+ .....- +....+.+.|+|++|+|||++|+.+++. .... .+.+..+.-.+
T Consensus 6 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~vll~G~~GtGKT~la~~la~~--~~~~---~~~~~~~~~~~--- 77 (262)
T 2qz4_A 6 KDVAGMHEAKLEVREFVDYLKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVATE--AQVP---FLAMAGAEFVE--- 77 (262)
T ss_dssp TSSCSCHHHHHHHHHHHHHHHCCC------CCCCCEEEEESCTTSSHHHHHHHHHHH--HTCC---EEEEETTTTSS---
T ss_pred HHhCCHHHHHHHHHHHHHHHHCHHHHHHcCCCCCceEEEECCCCCCHHHHHHHHHHH--hCCC---EEEechHHHHh---
Confidence 46899988877776554 221100 0124456889999999999999999873 2222 23343332211
Q ss_pred HHHHHHHHcCCCCCCCccHHHHHHHHHHHHhCCceEEEEeCCCCC------------CccCh---HHHHHhhcC--CCCC
Q 047321 178 VAKAIIEGLGVSAFGLSEFESLMKQIQEYITGKKIFLVLDDVWDG------------DYKKW---DPFFSCLKN--GHHE 240 (807)
Q Consensus 178 ~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~------------~~~~~---~~l~~~l~~--~~~g 240 (807)
.........+...+.......+.+|++||+..- +.... ..+...+.. ...+
T Consensus 78 ------------~~~~~~~~~~~~~~~~a~~~~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~ 145 (262)
T 2qz4_A 78 ------------VIGGLGAARVRSLFKEARARAPCIVYIDEIDAVGKKRSTTMSGFSNTEEEQTLNQLLVEMDGMGTTDH 145 (262)
T ss_dssp ------------SSTTHHHHHHHHHHHHHHHTCSEEEEEECC-------------------CHHHHHHHHHHHTCCTTCC
T ss_pred ------------hccChhHHHHHHHHHHHHhcCCeEEEEeCcchhhccccccccCccchhHHHHHHHHHHHhhCcCCCCC
Confidence 001111122233333444567899999999642 11111 223332322 1234
Q ss_pred cEEEEEcCCHHHH-HH-hC---CCceEeCCCCChhhHHHHHHHHHhccCCccCccchHHHHHHHHHHcCCCHH-HHHHHH
Q 047321 241 SKILITTHDRSVA-LQ-LG---SIDIIPVKELGEGECWLLFKQIAFLRRSFEDCEKLEPIGRKIASKCKGLPL-AAKVIG 314 (807)
Q Consensus 241 s~IliTTR~~~v~-~~-~~---~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~~~~I~~~c~glPL-ai~~~~ 314 (807)
..||.||...... .. .. -...+.++..+.++-.+++...+..... ..........+++.+.|.+- .|..+.
T Consensus 146 ~~vi~~tn~~~~ld~~l~~~~R~~~~i~i~~p~~~~r~~il~~~~~~~~~---~~~~~~~~~~l~~~~~g~~~~~l~~l~ 222 (262)
T 2qz4_A 146 VIVLASTNRADILDGALMRPGRLDRHVFIDLPTLQERREIFEQHLKSLKL---TQSSTFYSQRLAELTPGFSGADIANIC 222 (262)
T ss_dssp EEEEEEESCGGGGGSGGGSTTSCCEEEECCSCCHHHHHHHHHHHHHHTTC---CBTHHHHHHHHHHTCTTCCHHHHHHHH
T ss_pred EEEEecCCChhhcCHHHhcCCcCCeEEEeCCcCHHHHHHHHHHHHHhCCC---CcchhhHHHHHHHHCCCCCHHHHHHHH
Confidence 5666666554321 11 11 1247789999999999999887643322 11112234778888888753 454443
No 163
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=98.25 E-value=2.7e-05 Score=83.83 Aligned_cols=195 Identities=14% Similarity=0.087 Sum_probs=107.6
Q ss_pred CccccccchHHH---HHHHHhCCCCCCCCCceEEEEEccCCChHHHHHHHHHcCcccccccceEEEEEe----CCCCCHH
Q 047321 104 GGVCGRVDEKNE---LLSKLLCGSSEQQKGLDVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCV----SNTFEEI 176 (807)
Q Consensus 104 ~~~vGR~~~~~~---l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~----~~~~~~~ 176 (807)
.+++|++..++. +.+.+.... ...+.+.|+|++|+|||++|+.+++. ...... .+.+.. +......
T Consensus 44 ~~ivG~~~~~~~l~~l~~~~~~~~----~~~~~vLl~GppGtGKT~la~~la~~--l~~~~~-~~~~~~~~~~~~~~~~~ 116 (368)
T 3uk6_A 44 QGMVGQLAARRAAGVVLEMIREGK----IAGRAVLIAGQPGTGKTAIAMGMAQA--LGPDTP-FTAIAGSEIFSLEMSKT 116 (368)
T ss_dssp TTEESCHHHHHHHHHHHHHHHTTC----CTTCEEEEEESTTSSHHHHHHHHHHH--HCSSCC-EEEEEGGGGSCSSSCHH
T ss_pred hhccChHHHHHHHHHHHHHHHcCC----CCCCEEEEECCCCCCHHHHHHHHHHH--hcccCC-cccccchhhhhcccchh
Confidence 469999988666 455555332 13468999999999999999999873 222111 112221 2223333
Q ss_pred HHHHHHHHHcCCC---------------------------C-CC--CccHHHHHHHHHHHH-----hCC----ceEEEEe
Q 047321 177 SVAKAIIEGLGVS---------------------------A-FG--LSEFESLMKQIQEYI-----TGK----KIFLVLD 217 (807)
Q Consensus 177 ~~~~~i~~~l~~~---------------------------~-~~--~~~~~~~~~~l~~~l-----~~k----~~LlVlD 217 (807)
..+...+...... . .+ ..-...+...+.... .++ +.+|++|
T Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ld~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~vl~ID 196 (368)
T 3uk6_A 117 EALTQAFRRSIGVRIKAGAVHTVSLHEIDVINSRTQGFLALFSGDTGEIKSEVREQINAKVAEWREEGKAEIIPGVLFID 196 (368)
T ss_dssp HHHHHHHHHSBEECC------CEEHHHHHHHTC----CCSCC-------CHHHHHHHHHHHHHHHHHTC---CBCEEEEE
T ss_pred HHHHHHHHHHHHHHhhhhccccccHhhhhhhhcccccchhhccCcccccHHHHHHHHHHHHHHhhhhccccccCceEEEh
Confidence 3443333321100 0 00 000112222222211 244 4599999
Q ss_pred CCCCCCccChHHHHHhhcCCCCCcEEEEEcCC-----------------HHHHHHhCCCceEeCCCCChhhHHHHHHHHH
Q 047321 218 DVWDGDYKKWDPFFSCLKNGHHESKILITTHD-----------------RSVALQLGSIDIIPVKELGEGECWLLFKQIA 280 (807)
Q Consensus 218 dv~~~~~~~~~~l~~~l~~~~~gs~IliTTR~-----------------~~v~~~~~~~~~~~l~~L~~~~~~~Lf~~~a 280 (807)
++..-+......+...+...... .++++|.. +.+... ...+.+.+++.++..+++...+
T Consensus 197 Ei~~l~~~~~~~L~~~le~~~~~-~~ii~t~~~~~~i~~t~~~~~~~l~~~l~sR---~~~i~~~~~~~~e~~~il~~~~ 272 (368)
T 3uk6_A 197 EVHMLDIESFSFLNRALESDMAP-VLIMATNRGITRIRGTSYQSPHGIPIDLLDR---LLIVSTTPYSEKDTKQILRIRC 272 (368)
T ss_dssp SGGGSBHHHHHHHHHHTTCTTCC-EEEEEESCSEEECBTSSCEEETTCCHHHHTT---EEEEEECCCCHHHHHHHHHHHH
T ss_pred hccccChHHHHHHHHHhhCcCCC-eeeeecccceeeeeccCCCCcccCCHHHHhh---ccEEEecCCCHHHHHHHHHHHH
Confidence 99665555555566666544333 34444431 223222 2457999999999999999877
Q ss_pred hccCCccCccchHHHHHHHHHHcC-CCHHHHHHH
Q 047321 281 FLRRSFEDCEKLEPIGRKIASKCK-GLPLAAKVI 313 (807)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~I~~~c~-glPLai~~~ 313 (807)
...+. .--.+....|++.+. |.|-.+..+
T Consensus 273 ~~~~~----~~~~~~l~~l~~~~~~G~~r~~~~l 302 (368)
T 3uk6_A 273 EEEDV----EMSEDAYTVLTRIGLETSLRYAIQL 302 (368)
T ss_dssp HHTTC----CBCHHHHHHHHHHHHHSCHHHHHHH
T ss_pred HHcCC----CCCHHHHHHHHHHhcCCCHHHHHHH
Confidence 54322 122456788888887 777655433
No 164
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=98.21 E-value=2.3e-05 Score=82.68 Aligned_cols=175 Identities=13% Similarity=0.092 Sum_probs=105.5
Q ss_pred CccccccchHHHHHHHHhCCCCCCCCCceEEEEEccCCChHHHHHHHHHcCcccccccceEEEEEeCCCCCHHHHHHHHH
Q 047321 104 GGVCGRVDEKNELLSKLLCGSSEQQKGLDVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSNTFEEISVAKAII 183 (807)
Q Consensus 104 ~~~vGR~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 183 (807)
.+++|+++.++.+.+++.... ...++.+.|+.|+|||++|+.+++. ... ..+.++.+. .... ..
T Consensus 26 ~~ivg~~~~~~~l~~~l~~~~-----~~~~~L~~G~~G~GKT~la~~la~~--l~~---~~~~i~~~~-~~~~-~i---- 89 (324)
T 3u61_B 26 DECILPAFDKETFKSITSKGK-----IPHIILHSPSPGTGKTTVAKALCHD--VNA---DMMFVNGSD-CKID-FV---- 89 (324)
T ss_dssp TTSCCCHHHHHHHHHHHHTTC-----CCSEEEECSSTTSSHHHHHHHHHHH--TTE---EEEEEETTT-CCHH-HH----
T ss_pred HHHhCcHHHHHHHHHHHHcCC-----CCeEEEeeCcCCCCHHHHHHHHHHH--hCC---CEEEEcccc-cCHH-HH----
Confidence 569999999999999998432 3467888899999999999999873 221 233444332 1221 11
Q ss_pred HHcCCCCCCCccHHHHHHHHHHHH-----hCCceEEEEeCCCCCC-ccChHHHHHhhcCCCCCcEEEEEcCCHH-----H
Q 047321 184 EGLGVSAFGLSEFESLMKQIQEYI-----TGKKIFLVLDDVWDGD-YKKWDPFFSCLKNGHHESKILITTHDRS-----V 252 (807)
Q Consensus 184 ~~l~~~~~~~~~~~~~~~~l~~~l-----~~k~~LlVlDdv~~~~-~~~~~~l~~~l~~~~~gs~IliTTR~~~-----v 252 (807)
...+.+.. .+++.++++||+..-. ....+.+...+.....+.++|+||.... +
T Consensus 90 ----------------~~~~~~~~~~~~~~~~~~vliiDEi~~l~~~~~~~~L~~~le~~~~~~~iI~~~n~~~~l~~~l 153 (324)
T 3u61_B 90 ----------------RGPLTNFASAASFDGRQKVIVIDEFDRSGLAESQRHLRSFMEAYSSNCSIIITANNIDGIIKPL 153 (324)
T ss_dssp ----------------HTHHHHHHHBCCCSSCEEEEEEESCCCGGGHHHHHHHHHHHHHHGGGCEEEEEESSGGGSCTTH
T ss_pred ----------------HHHHHHHHhhcccCCCCeEEEEECCcccCcHHHHHHHHHHHHhCCCCcEEEEEeCCccccCHHH
Confidence 11222222 2367899999996544 4445556666655445667888877643 2
Q ss_pred HHHhCCCceEeCCCCChhhHHHHH-------HHHHhccCCccCccchHHHHHHHHHHcCCCHHH-HHHHHHH
Q 047321 253 ALQLGSIDIIPVKELGEGECWLLF-------KQIAFLRRSFEDCEKLEPIGRKIASKCKGLPLA-AKVIGNL 316 (807)
Q Consensus 253 ~~~~~~~~~~~l~~L~~~~~~~Lf-------~~~a~~~~~~~~~~~~~~~~~~I~~~c~glPLa-i~~~~~~ 316 (807)
... ...+++++++.++-.+++ ...+...+. ...+ .+....|++.++|.+-. +..+-.+
T Consensus 154 ~sR---~~~i~~~~~~~~e~~~il~~~~~~l~~~~~~~~~-~~~~--~~~~~~l~~~~~gd~R~a~~~L~~~ 219 (324)
T 3u61_B 154 QSR---CRVITFGQPTDEDKIEMMKQMIRRLTEICKHEGI-AIAD--MKVVAALVKKNFPDFRKTIGELDSY 219 (324)
T ss_dssp HHH---SEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHTC-CBSC--HHHHHHHHHHTCSCTTHHHHHHHHH
T ss_pred Hhh---CcEEEeCCCCHHHHHHHHHHHHHHHHHHHHHcCC-CCCc--HHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 222 247899999988844333 222222121 1111 25678889999887654 3334333
No 165
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=98.20 E-value=2.6e-05 Score=82.57 Aligned_cols=170 Identities=11% Similarity=0.060 Sum_probs=103.7
Q ss_pred cchHHHHHHHHhCCCCCCCCCceEEEEEccCCChHHHHHHHHHcCcccc--------------------cccceEEEEEe
Q 047321 110 VDEKNELLSKLLCGSSEQQKGLDVISLVGLGGIGKTTLAQLAYNNDEVK--------------------RNFEKVIWVCV 169 (807)
Q Consensus 110 ~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~--------------------~~f~~~~wv~~ 169 (807)
++..+.+...+..+ .-...+.++|+.|+|||++|+.+++...-. .|++ ..++..
T Consensus 8 ~~~~~~l~~~i~~~-----~~~~a~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~d-~~~~~~ 81 (334)
T 1a5t_A 8 RPDFEKLVASYQAG-----RGHHALLIQALPGMGDDALIYALSRYLLCQQPQGHKSCGHCRGCQLMQAGTHPD-YYTLAP 81 (334)
T ss_dssp HHHHHHHHHHHHTT-----CCCSEEEEECCTTSCHHHHHHHHHHHHTCSSCBTTBCCSCSHHHHHHHHTCCTT-EEEECC
T ss_pred HHHHHHHHHHHHcC-----CcceeEEEECCCCchHHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCCCC-EEEEec
Confidence 34456677766542 235679999999999999999987521100 1122 122221
Q ss_pred CCCCCHHHHHHHHHHHcCCCCCCCccHHHHHHHHHHHH-----hCCceEEEEeCCCCCCccChHHHHHhhcCCCCCcEEE
Q 047321 170 SNTFEEISVAKAIIEGLGVSAFGLSEFESLMKQIQEYI-----TGKKIFLVLDDVWDGDYKKWDPFFSCLKNGHHESKIL 244 (807)
Q Consensus 170 ~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l-----~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~Il 244 (807)
.. .......+++.. +.+.+ .+++-++|+|++..-.......+...+.....++.+|
T Consensus 82 ~~------------------~~~~~~i~~ir~-l~~~~~~~~~~~~~kvviIdead~l~~~a~naLLk~lEep~~~~~~I 142 (334)
T 1a5t_A 82 EK------------------GKNTLGVDAVRE-VTEKLNEHARLGGAKVVWVTDAALLTDAAANALLKTLEEPPAETWFF 142 (334)
T ss_dssp CT------------------TCSSBCHHHHHH-HHHHTTSCCTTSSCEEEEESCGGGBCHHHHHHHHHHHTSCCTTEEEE
T ss_pred cc------------------cCCCCCHHHHHH-HHHHHhhccccCCcEEEEECchhhcCHHHHHHHHHHhcCCCCCeEEE
Confidence 10 001112222221 22222 3567899999996655555666777777666677777
Q ss_pred EEcCCHH-HHHH-hCCCceEeCCCCChhhHHHHHHHHHhccCCccCccchHHHHHHHHHHcCCCHHHHHHH
Q 047321 245 ITTHDRS-VALQ-LGSIDIIPVKELGEGECWLLFKQIAFLRRSFEDCEKLEPIGRKIASKCKGLPLAAKVI 313 (807)
Q Consensus 245 iTTR~~~-v~~~-~~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~~~~I~~~c~glPLai~~~ 313 (807)
++|.+.. +... ......+.+.+++.++..+.+.+.. . . ..+.+..+++.++|.|..+..+
T Consensus 143 l~t~~~~~l~~ti~SRc~~~~~~~~~~~~~~~~L~~~~----~--~---~~~~~~~l~~~s~G~~r~a~~~ 204 (334)
T 1a5t_A 143 LATREPERLLATLRSRCRLHYLAPPPEQYAVTWLSREV----T--M---SQDALLAALRLSAGSPGAALAL 204 (334)
T ss_dssp EEESCGGGSCHHHHTTSEEEECCCCCHHHHHHHHHHHC----C--C---CHHHHHHHHHHTTTCHHHHHHT
T ss_pred EEeCChHhCcHHHhhcceeeeCCCCCHHHHHHHHHHhc----C--C---CHHHHHHHHHHcCCCHHHHHHH
Confidence 7777653 2211 2234689999999999999988764 1 1 1345678999999999766543
No 166
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=98.17 E-value=3.7e-06 Score=81.45 Aligned_cols=103 Identities=14% Similarity=0.188 Sum_probs=83.1
Q ss_pred ccccccCCCccccchhhhccccCCCCCCcccEEEEccCCCCCCCcccccCCCCccEEeeccCcccccccccccccCCCCC
Q 047321 680 KSLEIDGMKELEEWNYRITRKENISIMPRLSSLQIMNCRKLKALPDYLLQTIALQKLSIYSCDLLEELPILEDRRTTDIP 759 (807)
Q Consensus 680 ~~L~l~~~~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~lp~~l~~l~~L~~L~l~~c~~l~~lP~~~~~~~~~l~ 759 (807)
+.+++++ ..+..+|. . ..++|+.|+++++ .++.+|..+..+++|+.|+++++ .+..+| ...+..++
T Consensus 13 ~~l~~~~-~~l~~ip~------~--~~~~l~~L~L~~n-~i~~ip~~~~~l~~L~~L~Ls~N-~i~~i~---~~~f~~l~ 78 (193)
T 2wfh_A 13 TVVRCSN-KGLKVLPK------G--IPRDVTELYLDGN-QFTLVPKELSNYKHLTLIDLSNN-RISTLS---NQSFSNMT 78 (193)
T ss_dssp TEEECTT-SCCSSCCS------C--CCTTCCEEECCSS-CCCSCCGGGGGCTTCCEEECCSS-CCCCCC---TTTTTTCT
T ss_pred CEEEcCC-CCCCcCCC------C--CCCCCCEEECCCC-cCchhHHHhhcccCCCEEECCCC-cCCEeC---HhHccCCC
Confidence 4566655 35666664 2 3479999999998 78999999999999999999996 577765 14578999
Q ss_pred CCCeeeeccCCCcccCC-ccCCCCCcccccccccchhhh
Q 047321 760 RLSSLAIWYCPKLKVLP-DYLLRTTTLQAGEQDYENEKF 797 (807)
Q Consensus 760 ~L~~L~i~~c~~l~~lP-~~l~~l~~L~~L~l~~~~~~~ 797 (807)
+|++|+++++ .++.+| ..+..+++|+.|++++|.+..
T Consensus 79 ~L~~L~Ls~N-~l~~i~~~~f~~l~~L~~L~L~~N~l~~ 116 (193)
T 2wfh_A 79 QLLTLILSYN-RLRCIPPRTFDGLKSLRLLSLHGNDISV 116 (193)
T ss_dssp TCCEEECCSS-CCCBCCTTTTTTCTTCCEEECCSSCCCB
T ss_pred CCCEEECCCC-ccCEeCHHHhCCCCCCCEEECCCCCCCe
Confidence 9999999985 567766 578999999999999998864
No 167
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=98.16 E-value=1.2e-05 Score=84.18 Aligned_cols=162 Identities=12% Similarity=0.052 Sum_probs=89.9
Q ss_pred ccccccchHHHHHHHHhCCC---------CCCCCCceEEEEEccCCChHHHHHHHHHcCcccccccceEEEEEeCCCCCH
Q 047321 105 GVCGRVDEKNELLSKLLCGS---------SEQQKGLDVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSNTFEE 175 (807)
Q Consensus 105 ~~vGR~~~~~~l~~~L~~~~---------~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~ 175 (807)
+++|.++.++.+.+.+.... -........+.|+|++|+|||++|+.+++...........-++.++..
T Consensus 32 ~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~--- 108 (309)
T 3syl_A 32 ELIGLKPVKDRIRETAALLLVERARQKLGLAHETPTLHMSFTGNPGTGKTTVALKMAGLLHRLGYVRKGHLVSVTRD--- 108 (309)
T ss_dssp HSSSCHHHHHHHHHHHHHHHHHHHHHHHTCCSSCCCCEEEEEECTTSSHHHHHHHHHHHHHHTTSSSSCCEEEECGG---
T ss_pred HccChHHHHHHHHHHHHHHHhHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHhcCCcCCCcEEEEcHH---
Confidence 47888888877776653210 000124557899999999999999988763211111111112222210
Q ss_pred HHHHHHHHHHcCCCCCCCccHHHHHHHHHHHHhCCceEEEEeCCCCC---------CccChHHHHHhhcCCCCCcEEEEE
Q 047321 176 ISVAKAIIEGLGVSAFGLSEFESLMKQIQEYITGKKIFLVLDDVWDG---------DYKKWDPFFSCLKNGHHESKILIT 246 (807)
Q Consensus 176 ~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~---------~~~~~~~l~~~l~~~~~gs~IliT 246 (807)
.+.....+ .........+... +.-+|++||+..- .......+...+.....+..||.|
T Consensus 109 ---------~l~~~~~g-~~~~~~~~~~~~~---~~~vl~iDEid~l~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~i~~ 175 (309)
T 3syl_A 109 ---------DLVGQYIG-HTAPKTKEVLKRA---MGGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENNRDDLVVILA 175 (309)
T ss_dssp ---------GTCCSSTT-CHHHHHHHHHHHH---TTSEEEEETGGGSCCCC---CCTHHHHHHHHHHHHHCTTTCEEEEE
T ss_pred ---------Hhhhhccc-ccHHHHHHHHHhc---CCCEEEEEChhhhccCCCcccccHHHHHHHHHHHhcCCCCEEEEEe
Confidence 11111111 1111222222222 4569999999632 333445566666666666778888
Q ss_pred cCCHHHHHH--hCC------CceEeCCCCChhhHHHHHHHHHhc
Q 047321 247 THDRSVALQ--LGS------IDIIPVKELGEGECWLLFKQIAFL 282 (807)
Q Consensus 247 TR~~~v~~~--~~~------~~~~~l~~L~~~~~~~Lf~~~a~~ 282 (807)
|........ +.. ...+.+++++.++-.+++...+..
T Consensus 176 ~~~~~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~~ 219 (309)
T 3syl_A 176 GYADRMENFFQSNPGFRSRIAHHIEFPDYSDEELFEIAGHMLDD 219 (309)
T ss_dssp ECHHHHHHHHHHSTTHHHHEEEEEEECCCCHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHhhCHHHHHhCCeEEEcCCcCHHHHHHHHHHHHHH
Confidence 764432111 111 257899999999999999887743
No 168
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=98.13 E-value=4.1e-05 Score=78.49 Aligned_cols=196 Identities=17% Similarity=0.152 Sum_probs=101.9
Q ss_pred CccccccchHHHHHH-------HHhCCCCCCCCCceEEEEEccCCChHHHHHHHHHcCcccccccceEEEEEeCCCCCHH
Q 047321 104 GGVCGRVDEKNELLS-------KLLCGSSEQQKGLDVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSNTFEEI 176 (807)
Q Consensus 104 ~~~vGR~~~~~~l~~-------~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~ 176 (807)
..++|+....++++. .+.... ......+.|+|++|+|||++|+.+++. ....| +.+..+..
T Consensus 33 ~~~i~~~~~~~~i~~~~~~l~~~l~~~~---~~~~~~vLl~G~~GtGKT~la~~ia~~--~~~~~---~~i~~~~~---- 100 (272)
T 1d2n_A 33 NGIIKWGDPVTRVLDDGELLVQQTKNSD---RTPLVSVLLEGPPHSGKTALAAKIAEE--SNFPF---IKICSPDK---- 100 (272)
T ss_dssp TCCCCCSHHHHHHHHHHHHHHHHHHHCS---SCSEEEEEEECSTTSSHHHHHHHHHHH--HTCSE---EEEECGGG----
T ss_pred cCCCCccHHHHHHHHHHHHHHHHHhccC---CCCCeEEEEECCCCCcHHHHHHHHHHH--hCCCE---EEEeCHHH----
Confidence 357787777666665 332211 235678999999999999999999873 22221 22222211
Q ss_pred HHHHHHHHHcCCCCCCCccHHHHHHHHHHHHhCCceEEEEeCCCCC------C---ccCh-HHHHHhhcC---CCCCcEE
Q 047321 177 SVAKAIIEGLGVSAFGLSEFESLMKQIQEYITGKKIFLVLDDVWDG------D---YKKW-DPFFSCLKN---GHHESKI 243 (807)
Q Consensus 177 ~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~------~---~~~~-~~l~~~l~~---~~~gs~I 243 (807)
+.+. ........+...+......+..+|++||+..- . ...+ ..+...+.. ......|
T Consensus 101 ---------~~g~-~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~i 170 (272)
T 1d2n_A 101 ---------MIGF-SETAKCQAMKKIFDDAYKSQLSCVVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKAPPQGRKLLI 170 (272)
T ss_dssp ---------CTTC-CHHHHHHHHHHHHHHHHTSSEEEEEECCHHHHTTCBTTTTBCCHHHHHHHHHHTTCCCSTTCEEEE
T ss_pred ---------hcCC-chHHHHHHHHHHHHHHHhcCCcEEEEEChhhhhccCCCChhHHHHHHHHHHHHhcCccCCCCCEEE
Confidence 0000 00000112222333344567899999997421 1 1111 223333322 1223456
Q ss_pred EEEcCCHHHHHHh---CC-CceEeCCCCCh-hhHHHHHHHHHhccCCccCccchHHHHHHHHHHcCC------CHHHHHH
Q 047321 244 LITTHDRSVALQL---GS-IDIIPVKELGE-GECWLLFKQIAFLRRSFEDCEKLEPIGRKIASKCKG------LPLAAKV 312 (807)
Q Consensus 244 liTTR~~~v~~~~---~~-~~~~~l~~L~~-~~~~~Lf~~~a~~~~~~~~~~~~~~~~~~I~~~c~g------lPLai~~ 312 (807)
|.||......... .. ...+.+++++. ++...++.+.. . . ..+....|++.+.| +.-++..
T Consensus 171 i~ttn~~~~l~~~~l~~rf~~~i~~p~l~~r~~i~~i~~~~~----~--~---~~~~~~~l~~~~~g~~~~g~ir~l~~~ 241 (272)
T 1d2n_A 171 IGTTSRKDVLQEMEMLNAFSTTIHVPNIATGEQLLEALELLG----N--F---KDKERTTIAQQVKGKKVWIGIKKLLML 241 (272)
T ss_dssp EEEESCHHHHHHTTCTTTSSEEEECCCEEEHHHHHHHHHHHT----C--S---CHHHHHHHHHHHTTSEEEECHHHHHHH
T ss_pred EEecCChhhcchhhhhcccceEEcCCCccHHHHHHHHHHhcC----C--C---CHHHHHHHHHHhcCCCccccHHHHHHH
Confidence 7777776544331 11 35688999988 66666665421 1 1 13456788888887 4454444
Q ss_pred HHHHhhcCCCHHHHHHHHh
Q 047321 313 IGNLLRSKNTAKEWHIILD 331 (807)
Q Consensus 313 ~~~~l~~~~~~~~w~~~~~ 331 (807)
+-.... ......+..++.
T Consensus 242 l~~a~~-~~~~~~~~~~~~ 259 (272)
T 1d2n_A 242 IEMSLQ-MDPEYRVRKFLA 259 (272)
T ss_dssp HHHHTT-SCGGGHHHHHHH
T ss_pred HHHHhh-hchHHHHHHHHH
Confidence 443332 223344555443
No 169
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.13 E-value=4.7e-06 Score=88.28 Aligned_cols=83 Identities=20% Similarity=0.286 Sum_probs=67.0
Q ss_pred CCcccEEEEccCCCCCCCccc-ccCCCCccEEeeccCcccccccccccccCCCCCCCC-eeeeccCCCcccCC-ccCCCC
Q 047321 706 MPRLSSLQIMNCRKLKALPDY-LLQTIALQKLSIYSCDLLEELPILEDRRTTDIPRLS-SLAIWYCPKLKVLP-DYLLRT 782 (807)
Q Consensus 706 l~~L~~L~l~~c~~L~~lp~~-l~~l~~L~~L~l~~c~~l~~lP~~~~~~~~~l~~L~-~L~i~~c~~l~~lP-~~l~~l 782 (807)
+++|+.|++.++ +++.+|.+ +..+++|+.|++.+. +..++ ...+.++++|+ .+.+.+ .++.++ ..+.+|
T Consensus 225 ~~~L~~l~L~~n-~i~~I~~~aF~~~~~L~~l~l~~n--i~~I~---~~aF~~~~~L~~~l~l~~--~l~~I~~~aF~~c 296 (329)
T 3sb4_A 225 MPNLVSLDISKT-NATTIPDFTFAQKKYLLKIKLPHN--LKTIG---QRVFSNCGRLAGTLELPA--SVTAIEFGAFMGC 296 (329)
T ss_dssp CTTCCEEECTTB-CCCEECTTTTTTCTTCCEEECCTT--CCEEC---TTTTTTCTTCCEEEEECT--TCCEECTTTTTTC
T ss_pred cCCCeEEECCCC-CcceecHhhhhCCCCCCEEECCcc--cceeh---HHHhhCChhccEEEEEcc--cceEEchhhhhCC
Confidence 678999999877 68888764 778899999999873 77776 25677889999 999986 677876 778899
Q ss_pred Ccccccccccchhh
Q 047321 783 TTLQAGEQDYENEK 796 (807)
Q Consensus 783 ~~L~~L~l~~~~~~ 796 (807)
++|+.++++.|.+.
T Consensus 297 ~~L~~l~l~~n~i~ 310 (329)
T 3sb4_A 297 DNLRYVLATGDKIT 310 (329)
T ss_dssp TTEEEEEECSSCCC
T ss_pred ccCCEEEeCCCccC
Confidence 99999999877664
No 170
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=98.12 E-value=3.9e-06 Score=81.21 Aligned_cols=103 Identities=16% Similarity=0.160 Sum_probs=82.0
Q ss_pred ccccccCCCccccchhhhccccCCCCCCcccEEEEccCCCCCCCccc--ccCCCCccEEeeccCcccccc-cccccccCC
Q 047321 680 KSLEIDGMKELEEWNYRITRKENISIMPRLSSLQIMNCRKLKALPDY--LLQTIALQKLSIYSCDLLEEL-PILEDRRTT 756 (807)
Q Consensus 680 ~~L~l~~~~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~lp~~--l~~l~~L~~L~l~~c~~l~~l-P~~~~~~~~ 756 (807)
+.+++++ .+++.+|. . ..++|+.|+++++ +++.+|.. +..+++|++|+++++ .+..+ | ..+.
T Consensus 11 ~~l~~s~-~~l~~ip~------~--~~~~l~~L~l~~n-~i~~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~----~~~~ 75 (192)
T 1w8a_A 11 TTVDCTG-RGLKEIPR------D--IPLHTTELLLNDN-ELGRISSDGLFGRLPHLVKLELKRN-QLTGIEP----NAFE 75 (192)
T ss_dssp TEEECTT-SCCSSCCS------C--CCTTCSEEECCSC-CCCSBCCSCSGGGCTTCCEEECCSS-CCCCBCT----TTTT
T ss_pred CEEEcCC-CCcCcCcc------C--CCCCCCEEECCCC-cCCccCCccccccCCCCCEEECCCC-CCCCcCH----hHcC
Confidence 5677776 36666664 2 2459999999999 78888763 889999999999996 56665 5 6788
Q ss_pred CCCCCCeeeeccCCCcccCC-ccCCCCCcccccccccchhhhh
Q 047321 757 DIPRLSSLAIWYCPKLKVLP-DYLLRTTTLQAGEQDYENEKFS 798 (807)
Q Consensus 757 ~l~~L~~L~i~~c~~l~~lP-~~l~~l~~L~~L~l~~~~~~~~ 798 (807)
.+++|+.|+++++ .++.+| ..+.++++|+.|++++|++...
T Consensus 76 ~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~N~l~~~ 117 (192)
T 1w8a_A 76 GASHIQELQLGEN-KIKEISNKMFLGLHQLKTLNLYDNQISCV 117 (192)
T ss_dssp TCTTCCEEECCSC-CCCEECSSSSTTCTTCCEEECCSSCCCEE
T ss_pred CcccCCEEECCCC-cCCccCHHHhcCCCCCCEEECCCCcCCee
Confidence 9999999999985 466655 5689999999999999998654
No 171
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=98.11 E-value=3.5e-06 Score=80.62 Aligned_cols=121 Identities=15% Similarity=0.113 Sum_probs=65.4
Q ss_pred ccchHHHHHHHHhCCCCCCCCCceEEEEEccCCChHHHHHHHHHcCcccccccceEEEEEeCCCCCHHHHHHHHHHHcCC
Q 047321 109 RVDEKNELLSKLLCGSSEQQKGLDVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSNTFEEISVAKAIIEGLGV 188 (807)
Q Consensus 109 R~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~ 188 (807)
.++.++.+.+++..-. ......+.|+|++|+||||||+.+++.......+. +++++ ..++...+......
T Consensus 19 ~~~~~~~~~~~~~~~~---~~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~-~~~~~------~~~~~~~~~~~~~~ 88 (180)
T 3ec2_A 19 QNRALLTIRVFVHNFN---PEEGKGLTFVGSPGVGKTHLAVATLKAIYEKKGIR-GYFFD------TKDLIFRLKHLMDE 88 (180)
T ss_dssp HHHHHHHHHHHHHSCC---GGGCCEEEECCSSSSSHHHHHHHHHHHHHHHSCCC-CCEEE------HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcc---ccCCCEEEEECCCCCCHHHHHHHHHHHHHHHcCCe-EEEEE------HHHHHHHHHHHhcC
Confidence 3445555555554332 22457899999999999999999987322122221 22332 34444444333321
Q ss_pred CCCCCccHHHHHHHHHHHHhCCceEEEEeCCCCCCccChH--HHHHhhcCC-CCCcEEEEEcCC
Q 047321 189 SAFGLSEFESLMKQIQEYITGKKIFLVLDDVWDGDYKKWD--PFFSCLKNG-HHESKILITTHD 249 (807)
Q Consensus 189 ~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~~--~l~~~l~~~-~~gs~IliTTR~ 249 (807)
.... ... +.+. +.-+|||||++......|. .+...+... ..|..||+||..
T Consensus 89 ~~~~-----~~~----~~~~-~~~llilDE~~~~~~~~~~~~~l~~ll~~~~~~~~~ii~tsn~ 142 (180)
T 3ec2_A 89 GKDT-----KFL----KTVL-NSPVLVLDDLGSERLSDWQRELISYIITYRYNNLKSTIITTNY 142 (180)
T ss_dssp TCCS-----HHH----HHHH-TCSEEEEETCSSSCCCHHHHHHHHHHHHHHHHTTCEEEEECCC
T ss_pred chHH-----HHH----HHhc-CCCEEEEeCCCCCcCCHHHHHHHHHHHHHHHHcCCCEEEEcCC
Confidence 1111 111 1222 5679999999743333443 344444332 256778888864
No 172
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=98.11 E-value=3.8e-05 Score=81.00 Aligned_cols=156 Identities=18% Similarity=0.138 Sum_probs=89.0
Q ss_pred CceEEEEEccCCChHHHHHHHHHcCcccccccceEEEEEeCCCCCHHHHHHHHHHHcCCCCCCCccHHHHHHHHHHHHhC
Q 047321 130 GLDVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSNTFEEISVAKAIIEGLGVSAFGLSEFESLMKQIQEYITG 209 (807)
Q Consensus 130 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~ 209 (807)
....+.|+|++|+||||||+.+++. ....-...++++. ..+...+...+... .. ..+.....
T Consensus 36 ~~~~lll~G~~GtGKT~la~~i~~~--~~~~~~~~~~i~~------~~~~~~~~~~~~~~-----~~----~~~~~~~~- 97 (324)
T 1l8q_A 36 LYNPIFIYGSVGTGKTHLLQAAGNE--AKKRGYRVIYSSA------DDFAQAMVEHLKKG-----TI----NEFRNMYK- 97 (324)
T ss_dssp SCSSEEEECSSSSSHHHHHHHHHHH--HHHTTCCEEEEEH------HHHHHHHHHHHHHT-----CH----HHHHHHHH-
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHH--HHHCCCEEEEEEH------HHHHHHHHHHHHcC-----cH----HHHHHHhc-
Confidence 3567899999999999999999873 2111112344443 22333333332111 11 11222222
Q ss_pred CceEEEEeCCCCCCc--cChHHHHHhhcC-CCCCcEEEEEcCC---------HHHHHHhCCCceEeCCCCChhhHHHHHH
Q 047321 210 KKIFLVLDDVWDGDY--KKWDPFFSCLKN-GHHESKILITTHD---------RSVALQLGSIDIIPVKELGEGECWLLFK 277 (807)
Q Consensus 210 k~~LlVlDdv~~~~~--~~~~~l~~~l~~-~~~gs~IliTTR~---------~~v~~~~~~~~~~~l~~L~~~~~~~Lf~ 277 (807)
+..+|++||+..-.. ...+.+...+.. ...|..||+||.+ +.+...+.....+++++ +.++..+++.
T Consensus 98 ~~~vL~iDEi~~l~~~~~~~~~l~~~l~~~~~~~~~iii~~~~~~~~l~~l~~~L~sR~~~~~~i~l~~-~~~e~~~il~ 176 (324)
T 1l8q_A 98 SVDLLLLDDVQFLSGKERTQIEFFHIFNTLYLLEKQIILASDRHPQKLDGVSDRLVSRFEGGILVEIEL-DNKTRFKIIK 176 (324)
T ss_dssp TCSEEEEECGGGGTTCHHHHHHHHHHHHHHHHTTCEEEEEESSCGGGCTTSCHHHHHHHHTSEEEECCC-CHHHHHHHHH
T ss_pred CCCEEEEcCcccccCChHHHHHHHHHHHHHHHCCCeEEEEecCChHHHHHhhhHhhhcccCceEEEeCC-CHHHHHHHHH
Confidence 467999999954322 122334444432 1345578887753 22333333335789999 9999999999
Q ss_pred HHHhccCCccCccchHHHHHHHHHHcCCCHHH
Q 047321 278 QIAFLRRSFEDCEKLEPIGRKIASKCKGLPLA 309 (807)
Q Consensus 278 ~~a~~~~~~~~~~~~~~~~~~I~~~c~glPLa 309 (807)
..+...+. .. -.+....|++.+ |..-.
T Consensus 177 ~~~~~~~~-~l---~~~~l~~l~~~~-g~~r~ 203 (324)
T 1l8q_A 177 EKLKEFNL-EL---RKEVIDYLLENT-KNVRE 203 (324)
T ss_dssp HHHHHTTC-CC---CHHHHHHHHHHC-SSHHH
T ss_pred HHHHhcCC-CC---CHHHHHHHHHhC-CCHHH
Confidence 88753222 11 245678888888 77654
No 173
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.11 E-value=4e-06 Score=88.82 Aligned_cols=100 Identities=13% Similarity=0.049 Sum_probs=80.2
Q ss_pred CcccccccccCCCccccchhhhccccCCCCCCcccEEEEccCCCCCCCcc-cccCCCCcc-EEeeccCcccccccccccc
Q 047321 676 FPKLKSLEIDGMKELEEWNYRITRKENISIMPRLSSLQIMNCRKLKALPD-YLLQTIALQ-KLSIYSCDLLEELPILEDR 753 (807)
Q Consensus 676 l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~lp~-~l~~l~~L~-~L~l~~c~~l~~lP~~~~~ 753 (807)
+++|+.|+|.++ +++.++. ..+..+++|+.|.+.+. ++.++. .+..+++|+ .|.+.+ .++.++ ..
T Consensus 225 ~~~L~~l~L~~n-~i~~I~~-----~aF~~~~~L~~l~l~~n--i~~I~~~aF~~~~~L~~~l~l~~--~l~~I~---~~ 291 (329)
T 3sb4_A 225 MPNLVSLDISKT-NATTIPD-----FTFAQKKYLLKIKLPHN--LKTIGQRVFSNCGRLAGTLELPA--SVTAIE---FG 291 (329)
T ss_dssp CTTCCEEECTTB-CCCEECT-----TTTTTCTTCCEEECCTT--CCEECTTTTTTCTTCCEEEEECT--TCCEEC---TT
T ss_pred cCCCeEEECCCC-CcceecH-----hhhhCCCCCCEEECCcc--cceehHHHhhCChhccEEEEEcc--cceEEc---hh
Confidence 788999999873 5777664 45677899999999875 888875 478899999 999987 677775 25
Q ss_pred cCCCCCCCCeeeeccCCCcccCC-ccCCCCCcccccc
Q 047321 754 RTTDIPRLSSLAIWYCPKLKVLP-DYLLRTTTLQAGE 789 (807)
Q Consensus 754 ~~~~l~~L~~L~i~~c~~l~~lP-~~l~~l~~L~~L~ 789 (807)
.+.++++|+.|.+.. +.++.++ ..+.++++|+.+.
T Consensus 292 aF~~c~~L~~l~l~~-n~i~~I~~~aF~~~~~L~~ly 327 (329)
T 3sb4_A 292 AFMGCDNLRYVLATG-DKITTLGDELFGNGVPSKLIY 327 (329)
T ss_dssp TTTTCTTEEEEEECS-SCCCEECTTTTCTTCCCCEEE
T ss_pred hhhCCccCCEEEeCC-CccCccchhhhcCCcchhhhc
Confidence 678999999999875 5788887 5788999998875
No 174
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=98.10 E-value=9.7e-06 Score=76.99 Aligned_cols=89 Identities=15% Similarity=0.191 Sum_probs=70.5
Q ss_pred CcccccccccCCCccccchhhhccccCCCCCCcccEEEEccCCCCCCCccc-ccCCCCccEEeeccCccccccccccccc
Q 047321 676 FPKLKSLEIDGMKELEEWNYRITRKENISIMPRLSSLQIMNCRKLKALPDY-LLQTIALQKLSIYSCDLLEELPILEDRR 754 (807)
Q Consensus 676 l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~lp~~-l~~l~~L~~L~l~~c~~l~~lP~~~~~~ 754 (807)
+++|+.|+|+++ .+..++. ..+..+++|+.|+++++ +++.+|.. +..+++|+.|+|+++ .+..+|. ..
T Consensus 32 ~~~L~~L~Ls~N-~l~~~~~-----~~~~~l~~L~~L~Ls~N-~l~~i~~~~~~~l~~L~~L~L~~N-~l~~l~~---~~ 100 (174)
T 2r9u_A 32 PTDKQRLWLNNN-QITKLEP-----GVFDHLVNLQQLYFNSN-KLTAIPTGVFDKLTQLTQLDLNDN-HLKSIPR---GA 100 (174)
T ss_dssp CTTCSEEECCSS-CCCCCCT-----TTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS-CCCCCCT---TT
T ss_pred CCCCcEEEeCCC-CccccCH-----HHhcCCcCCCEEECCCC-CCCccChhHhCCcchhhEEECCCC-ccceeCH---HH
Confidence 478999999984 6766643 35678999999999999 89999876 478999999999985 6888871 23
Q ss_pred CCCCCCCCeeeeccCCCcccCC
Q 047321 755 TTDIPRLSSLAIWYCPKLKVLP 776 (807)
Q Consensus 755 ~~~l~~L~~L~i~~c~~l~~lP 776 (807)
+..+++|++|++++++ +...|
T Consensus 101 ~~~l~~L~~L~L~~N~-~~c~~ 121 (174)
T 2r9u_A 101 FDNLKSLTHIYLYNNP-WDCEC 121 (174)
T ss_dssp TTTCTTCSEEECCSSC-BCTTB
T ss_pred hccccCCCEEEeCCCC-ccccc
Confidence 7889999999999854 44444
No 175
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=98.08 E-value=5.8e-06 Score=79.27 Aligned_cols=44 Identities=25% Similarity=0.224 Sum_probs=37.8
Q ss_pred CccccccchHHHHHHHHhCCCCCCCCCceEEEEEccCCChHHHHHHHHHc
Q 047321 104 GGVCGRVDEKNELLSKLLCGSSEQQKGLDVISLVGLGGIGKTTLAQLAYN 153 (807)
Q Consensus 104 ~~~vGR~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 153 (807)
..++||+++++.+.+.+.. ...+.+.|+|++|+|||++|+.+++
T Consensus 22 ~~~~g~~~~~~~l~~~l~~------~~~~~vll~G~~G~GKT~la~~~~~ 65 (187)
T 2p65_A 22 DPVIGRDTEIRRAIQILSR------RTKNNPILLGDPGVGKTAIVEGLAI 65 (187)
T ss_dssp CCCCSCHHHHHHHHHHHTS------SSSCEEEEESCGGGCHHHHHHHHHH
T ss_pred chhhcchHHHHHHHHHHhC------CCCCceEEECCCCCCHHHHHHHHHH
Confidence 4699999999999999964 2345678999999999999999986
No 176
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=98.06 E-value=5.5e-08 Score=95.01 Aligned_cols=112 Identities=15% Similarity=0.075 Sum_probs=91.2
Q ss_pred cccCcccccccccCCCccccchhhhccccCCCCCCcccEEEEccCCCCCCCcccccCCCCccEEeeccCccccccccccc
Q 047321 673 VIAFPKLKSLEIDGMKELEEWNYRITRKENISIMPRLSSLQIMNCRKLKALPDYLLQTIALQKLSIYSCDLLEELPILED 752 (807)
Q Consensus 673 ~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~lp~~l~~l~~L~~L~l~~c~~l~~lP~~~~ 752 (807)
+..+++|+.|+++++ .+..++ .+..+++|+.|++++| .+..+|..+..+++|+.|++++| .+..+|
T Consensus 44 ~~~l~~L~~L~ls~n-~l~~l~-------~~~~l~~L~~L~l~~n-~l~~l~~~~~~~~~L~~L~L~~N-~l~~l~---- 109 (198)
T 1ds9_A 44 LSTLKACKHLALSTN-NIEKIS-------SLSGMENLRILSLGRN-LIKKIENLDAVADTLEELWISYN-QIASLS---- 109 (198)
T ss_dssp HHHTTTCSEEECSEE-EESCCC-------CHHHHTTCCEEEEEEE-EECSCSSHHHHHHHCSEEEEEEE-ECCCHH----
T ss_pred HhcCCCCCEEECCCC-CCcccc-------ccccCCCCCEEECCCC-CcccccchhhcCCcCCEEECcCC-cCCcCC----
Confidence 458899999999885 555543 3446899999999999 78899987777899999999996 677776
Q ss_pred ccCCCCCCCCeeeeccCCCcccCCc--cCCCCCcccccccccchhhhhhh
Q 047321 753 RRTTDIPRLSSLAIWYCPKLKVLPD--YLLRTTTLQAGEQDYENEKFSQR 800 (807)
Q Consensus 753 ~~~~~l~~L~~L~i~~c~~l~~lP~--~l~~l~~L~~L~l~~~~~~~~~~ 800 (807)
.+..+++|+.|++++| .++.+|. .+..+++|+.|++++|++....|
T Consensus 110 -~~~~l~~L~~L~l~~N-~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~ 157 (198)
T 1ds9_A 110 -GIEKLVNLRVLYMSNN-KITNWGEIDKLAALDKLEDLLLAGNPLYNDYK 157 (198)
T ss_dssp -HHHHHHHSSEEEESEE-ECCCHHHHHHHTTTTTCSEEEECSCHHHHHHH
T ss_pred -ccccCCCCCEEECCCC-cCCchhHHHHHhcCCCCCEEEecCCccccccc
Confidence 3567899999999985 5676664 78899999999999999866533
No 177
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=98.04 E-value=1.4e-05 Score=75.53 Aligned_cols=84 Identities=17% Similarity=0.222 Sum_probs=67.4
Q ss_pred CcccccccccCCCccccchhhhccccCCCCCCcccEEEEccCCCCCCCccc-ccCCCCccEEeeccCccccccccccccc
Q 047321 676 FPKLKSLEIDGMKELEEWNYRITRKENISIMPRLSSLQIMNCRKLKALPDY-LLQTIALQKLSIYSCDLLEELPILEDRR 754 (807)
Q Consensus 676 l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~lp~~-l~~l~~L~~L~l~~c~~l~~lP~~~~~~ 754 (807)
+++|+.|+|+++ .+..++. ..+..+++|+.|+++++ ++..+|.. +..+++|+.|+|+++ .+..+|. ..
T Consensus 29 ~~~l~~L~L~~N-~i~~~~~-----~~~~~l~~L~~L~Ls~N-~l~~l~~~~f~~l~~L~~L~L~~N-~l~~~~~---~~ 97 (170)
T 3g39_A 29 PTTTQVLYLYDN-QITKLEP-----GVFDRLTQLTRLDLDNN-QLTVLPAGVFDKLTQLTQLSLNDN-QLKSIPR---GA 97 (170)
T ss_dssp CTTCSEEECCSS-CCCCCCT-----TTTTTCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS-CCCCCCT---TT
T ss_pred CCCCcEEEcCCC-cCCccCh-----hhhcCcccCCEEECCCC-CcCccChhhccCCCCCCEEECCCC-ccCEeCH---HH
Confidence 478999999884 6766643 35678999999999998 78888876 478999999999985 6778771 34
Q ss_pred CCCCCCCCeeeeccCC
Q 047321 755 TTDIPRLSSLAIWYCP 770 (807)
Q Consensus 755 ~~~l~~L~~L~i~~c~ 770 (807)
+..+++|+.|++++++
T Consensus 98 ~~~l~~L~~L~L~~N~ 113 (170)
T 3g39_A 98 FDNLKSLTHIWLLNNP 113 (170)
T ss_dssp TTTCTTCCEEECCSSC
T ss_pred hcCCCCCCEEEeCCCC
Confidence 7789999999998754
No 178
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.04 E-value=5.2e-05 Score=80.54 Aligned_cols=175 Identities=11% Similarity=0.085 Sum_probs=105.4
Q ss_pred CccccccchHHHHHHHHhCCCCCCCCCceEEEEEccCCChHHHHHHHHHcCcccccccc-eEEEEEeCCCCCHHHHHHHH
Q 047321 104 GGVCGRVDEKNELLSKLLCGSSEQQKGLDVISLVGLGGIGKTTLAQLAYNNDEVKRNFE-KVIWVCVSNTFEEISVAKAI 182 (807)
Q Consensus 104 ~~~vGR~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~-~~~wv~~~~~~~~~~~~~~i 182 (807)
.+++|.+..++.|...+..+ ..+.+.++|+.|+||||+|+.++.... ...+. ....++.+....
T Consensus 25 ~~~~g~~~~~~~L~~~i~~g------~~~~~ll~Gp~G~GKTtla~~la~~l~-~~~~~~~~~~~~~~~~~~-------- 89 (340)
T 1sxj_C 25 DEVYGQNEVITTVRKFVDEG------KLPHLLFYGPPGTGKTSTIVALAREIY-GKNYSNMVLELNASDDRG-------- 89 (340)
T ss_dssp GGCCSCHHHHHHHHHHHHTT------CCCCEEEECSSSSSHHHHHHHHHHHHH-TTSHHHHEEEECTTSCCS--------
T ss_pred HHhcCcHHHHHHHHHHHhcC------CCceEEEECCCCCCHHHHHHHHHHHHc-CCCccceEEEEcCccccc--------
Confidence 35789888888888888743 333389999999999999999986311 11111 112222222111
Q ss_pred HHHcCCCCCCCccHHHHHHHHHHHH------hCCceEEEEeCCCCCCccChHHHHHhhcCCCCCcEEEEEcCCHH-HHH-
Q 047321 183 IEGLGVSAFGLSEFESLMKQIQEYI------TGKKIFLVLDDVWDGDYKKWDPFFSCLKNGHHESKILITTHDRS-VAL- 254 (807)
Q Consensus 183 ~~~l~~~~~~~~~~~~~~~~l~~~l------~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~IliTTR~~~-v~~- 254 (807)
.+.....+.... .+.+-++|+|++..-.....+.+...+......+++|++|.... +..
T Consensus 90 -------------~~~ir~~i~~~~~~~~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~~n~~~~i~~~ 156 (340)
T 1sxj_C 90 -------------IDVVRNQIKDFASTRQIFSKGFKLIILDEADAMTNAAQNALRRVIERYTKNTRFCVLANYAHKLTPA 156 (340)
T ss_dssp -------------HHHHHTHHHHHHHBCCSSSCSCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHH
T ss_pred -------------HHHHHHHHHHHHhhcccCCCCceEEEEeCCCCCCHHHHHHHHHHHhcCCCCeEEEEEecCccccchh
Confidence 222222222222 13467899999965444455667766666556677777775432 111
Q ss_pred HhCCCceEeCCCCChhhHHHHHHHHHhccCCccCccchHHHHHHHHHHcCCCHHHH
Q 047321 255 QLGSIDIIPVKELGEGECWLLFKQIAFLRRSFEDCEKLEPIGRKIASKCKGLPLAA 310 (807)
Q Consensus 255 ~~~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~~~~I~~~c~glPLai 310 (807)
.......+.+.+++.++..+.+.+.+-..+- . --.+..+.|++.++|.+--+
T Consensus 157 i~sR~~~~~~~~l~~~~~~~~l~~~~~~~~~-~---i~~~~~~~i~~~s~G~~r~~ 208 (340)
T 1sxj_C 157 LLSQCTRFRFQPLPQEAIERRIANVLVHEKL-K---LSPNAEKALIELSNGDMRRV 208 (340)
T ss_dssp HHTTSEEEECCCCCHHHHHHHHHHHHHTTTC-C---BCHHHHHHHHHHHTTCHHHH
T ss_pred HHhhceeEeccCCCHHHHHHHHHHHHHHcCC-C---CCHHHHHHHHHHcCCCHHHH
Confidence 1122347899999999998888876632221 1 12346788899999988643
No 179
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=98.01 E-value=5e-06 Score=76.33 Aligned_cols=114 Identities=16% Similarity=0.017 Sum_probs=68.3
Q ss_pred ccccccchHHHHHHHHhCCCCCCCCCceEEEEEccCCChHHHHHHHHHcCcccccccceEEEEEeCCCCCHHHHHHHHHH
Q 047321 105 GVCGRVDEKNELLSKLLCGSSEQQKGLDVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSNTFEEISVAKAIIE 184 (807)
Q Consensus 105 ~~vGR~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~ 184 (807)
+++|+...++++.+.+..... ...-|.|+|+.|+|||++|+.+++.... .....+ +++....+.
T Consensus 2 ~iiG~s~~~~~~~~~~~~~a~----~~~~vll~G~~GtGKt~lA~~i~~~~~~-~~~~~v--~~~~~~~~~--------- 65 (145)
T 3n70_A 2 ELIGRSEWINQYRRRLQQLSE----TDIAVWLYGAPGTGRMTGARYLHQFGRN-AQGEFV--YRELTPDNA--------- 65 (145)
T ss_dssp --CCSSHHHHHHHHHHHHHTT----CCSCEEEESSTTSSHHHHHHHHHHSSTT-TTSCCE--EEECCTTTS---------
T ss_pred CceeCCHHHHHHHHHHHHHhC----CCCCEEEECCCCCCHHHHHHHHHHhCCc-cCCCEE--EECCCCCcc---------
Confidence 589999999999888754321 2234789999999999999999874221 111222 554433221
Q ss_pred HcCCCCCCCccHHHHHHHHHHHHhCCceEEEEeCCCCCCccChHHHHHhhcCCCCCcEEEEEcCC
Q 047321 185 GLGVSAFGLSEFESLMKQIQEYITGKKIFLVLDDVWDGDYKKWDPFFSCLKNGHHESKILITTHD 249 (807)
Q Consensus 185 ~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~IliTTR~ 249 (807)
..... .+.. .+.-.|++||+..-.......+...+.......+||.||..
T Consensus 66 ---------~~~~~---~~~~---a~~g~l~ldei~~l~~~~q~~Ll~~l~~~~~~~~~I~~t~~ 115 (145)
T 3n70_A 66 ---------PQLND---FIAL---AQGGTLVLSHPEHLTREQQYHLVQLQSQEHRPFRLIGIGDT 115 (145)
T ss_dssp ---------SCHHH---HHHH---HTTSCEEEECGGGSCHHHHHHHHHHHHSSSCSSCEEEEESS
T ss_pred ---------hhhhc---HHHH---cCCcEEEEcChHHCCHHHHHHHHHHHhhcCCCEEEEEECCc
Confidence 11111 1111 13457899999766555556677777555555677777654
No 180
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=98.01 E-value=0.00033 Score=72.72 Aligned_cols=184 Identities=15% Similarity=0.082 Sum_probs=102.1
Q ss_pred CccccccchHHHHHHHHhCCCC------CCCCCceEEEEEccCCChHHHHHHHHHcCcccccccceEEEEEeCCCCCHHH
Q 047321 104 GGVCGRVDEKNELLSKLLCGSS------EQQKGLDVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSNTFEEIS 177 (807)
Q Consensus 104 ~~~vGR~~~~~~l~~~L~~~~~------~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~ 177 (807)
.+++|.+..++.+.+.+..+.. .-....+.+.|+|++|+||||+|+.+++. .... .+.++.+.-..
T Consensus 21 ~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~la~~--~~~~---~~~i~~~~l~~--- 92 (297)
T 3b9p_A 21 TDIAGQDVAKQALQEMVILPSVRPELFTGLRAPAKGLLLFGPPGNGKTLLARAVATE--CSAT---FLNISAASLTS--- 92 (297)
T ss_dssp GGSCCCHHHHHHHHHHTHHHHHCGGGSCGGGCCCSEEEEESSSSSCHHHHHHHHHHH--TTCE---EEEEESTTTSS---
T ss_pred HHhCChHHHHHHHHHHHHhhhhCHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHH--hCCC---eEEeeHHHHhh---
Confidence 4699999999999887732100 00123568899999999999999999873 2222 22333322210
Q ss_pred HHHHHHHHcCCCCCCCccHHHHHH-HHHHHHhCCceEEEEeCCCCCCc-----------cChHHHHHhhcCC-----CCC
Q 047321 178 VAKAIIEGLGVSAFGLSEFESLMK-QIQEYITGKKIFLVLDDVWDGDY-----------KKWDPFFSCLKNG-----HHE 240 (807)
Q Consensus 178 ~~~~i~~~l~~~~~~~~~~~~~~~-~l~~~l~~k~~LlVlDdv~~~~~-----------~~~~~l~~~l~~~-----~~g 240 (807)
... .+...... .+......++.+|++|++..-.. .....+...+... ..+
T Consensus 93 -----------~~~--~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~ 159 (297)
T 3b9p_A 93 -----------KYV--GDGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLPGNPDGDR 159 (297)
T ss_dssp -----------SSC--SCHHHHHHHHHHHHHHTCSEEEEEETGGGTSBCC-----CCSHHHHHHHHHHHHHCC------C
T ss_pred -----------ccc--chHHHHHHHHHHHHHHcCCcEEEeccHHHhccccccCcchHHHHHHHHHHHHHhcccccCCCCc
Confidence 000 11222222 23333356788999999843211 0011222222211 123
Q ss_pred cEEEEEcCCH-----HHHHHhCCCceEeCCCCChhhHHHHHHHHHhccCCccCccchHHHHHHHHHHcCCCHH-HHHHHH
Q 047321 241 SKILITTHDR-----SVALQLGSIDIIPVKELGEGECWLLFKQIAFLRRSFEDCEKLEPIGRKIASKCKGLPL-AAKVIG 314 (807)
Q Consensus 241 s~IliTTR~~-----~v~~~~~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~~~~I~~~c~glPL-ai~~~~ 314 (807)
..||.||... .+...+ ...+.++..+.++...++...+...... -.......|++.+.|.+- ++..+.
T Consensus 160 v~vi~~tn~~~~l~~~l~~R~--~~~i~~~~p~~~~r~~il~~~~~~~~~~----~~~~~~~~la~~~~g~~~~~l~~l~ 233 (297)
T 3b9p_A 160 IVVLAATNRPQELDEAALRRF--TKRVYVSLPDEQTRELLLNRLLQKQGSP----LDTEALRRLAKITDGYSGSDLTALA 233 (297)
T ss_dssp EEEEEEESCGGGBCHHHHHHC--CEEEECCCCCHHHHHHHHHHHHGGGSCC----SCHHHHHHHHHHTTTCCHHHHHHHH
T ss_pred EEEEeecCChhhCCHHHHhhC--CeEEEeCCcCHHHHHHHHHHHHHhcCCC----CCHHHHHHHHHHcCCCCHHHHHHHH
Confidence 5566677653 233322 2467788888888888887766432211 113456788899998775 554443
No 181
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=97.98 E-value=0.00019 Score=76.46 Aligned_cols=186 Identities=15% Similarity=0.051 Sum_probs=102.5
Q ss_pred CccccccchHHHHHHHHhCC----C--CCCCCCceEEEEEccCCChHHHHHHHHHcCcccccccceEEEEEeCCCCCHHH
Q 047321 104 GGVCGRVDEKNELLSKLLCG----S--SEQQKGLDVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSNTFEEIS 177 (807)
Q Consensus 104 ~~~vGR~~~~~~l~~~L~~~----~--~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~ 177 (807)
.+++|.++.++.|.+.+..+ . .......+-|.|+|++|+|||+||+.+++. ....| +.+..+ .
T Consensus 51 ~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~--~~~~~---~~v~~~------~ 119 (355)
T 2qp9_X 51 EDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATE--ANSTF---FSVSSS------D 119 (355)
T ss_dssp GGSCCGGGHHHHHHHHTHHHHHCGGGGCSSCCCCCCEEEECSTTSCHHHHHHHHHHH--HTCEE---EEEEHH------H
T ss_pred HHhCCHHHHHHHHHHHHHHHHhCHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHH--hCCCE---EEeeHH------H
Confidence 46999999999998876321 0 000123456889999999999999999973 32222 222211 1
Q ss_pred HHHHHHHHcCCCCCCCccHHHHHHHHHHHHhCCceEEEEeCCCCCCcc-----------ChHHHHHhhcC---CCCCcEE
Q 047321 178 VAKAIIEGLGVSAFGLSEFESLMKQIQEYITGKKIFLVLDDVWDGDYK-----------KWDPFFSCLKN---GHHESKI 243 (807)
Q Consensus 178 ~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~-----------~~~~l~~~l~~---~~~gs~I 243 (807)
+ .... .+ .....+...+...-..++.+|++|++..-... ....+...+.. ...+..|
T Consensus 120 l----~~~~----~g-~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~v 190 (355)
T 2qp9_X 120 L----VSKW----MG-ESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQGVLV 190 (355)
T ss_dssp H----HSCC--------CHHHHHHHHHHHHHTSSEEEEEECGGGGTC------CTHHHHHHHHHHHHHHHCC---CCEEE
T ss_pred H----hhhh----cc-hHHHHHHHHHHHHHHcCCeEEEEechHhhcccCCCCcchHHHHHHHHHHHHhhcccccCCCeEE
Confidence 1 1111 01 11122222223333567899999999542110 02223333321 2344556
Q ss_pred EEEcCCHH-----HHHHhCCCceEeCCCCChhhHHHHHHHHHhccCCccCccchHHHHHHHHHHcCC-CHHHHHHHHH
Q 047321 244 LITTHDRS-----VALQLGSIDIIPVKELGEGECWLLFKQIAFLRRSFEDCEKLEPIGRKIASKCKG-LPLAAKVIGN 315 (807)
Q Consensus 244 liTTR~~~-----v~~~~~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~~~~I~~~c~g-lPLai~~~~~ 315 (807)
|.||.... +.. .-...+.+...+.++-.+++..++..... .. -......|++.+.| .+-.|..+..
T Consensus 191 I~atn~~~~ld~al~r--Rf~~~i~i~~P~~~~r~~il~~~l~~~~~-~~---~~~~l~~la~~t~G~sg~dl~~l~~ 262 (355)
T 2qp9_X 191 LGATNIPWQLDSAIRR--RFERRIYIPLPDLAARTTMFEINVGDTPS-VL---TKEDYRTLGAMTEGYSGSDIAVVVK 262 (355)
T ss_dssp EEEESCGGGSCHHHHH--TCCEEEECCCCCHHHHHHHHHHHHTTSCB-CC---CHHHHHHHHHHTTTCCHHHHHHHHH
T ss_pred EeecCCcccCCHHHHc--ccCEEEEeCCcCHHHHHHHHHHHHhhCCC-CC---CHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 66665432 222 22357789999999999999887643221 11 13346788899988 5655655543
No 182
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=97.97 E-value=0.00018 Score=76.70 Aligned_cols=188 Identities=10% Similarity=0.017 Sum_probs=104.5
Q ss_pred CccccccchHHHHHHHHhCC----CC--CCCCCceEEEEEccCCChHHHHHHHHHcCcccccccceEEEEEeCCCCCHHH
Q 047321 104 GGVCGRVDEKNELLSKLLCG----SS--EQQKGLDVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSNTFEEIS 177 (807)
Q Consensus 104 ~~~vGR~~~~~~l~~~L~~~----~~--~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~ 177 (807)
.+++|.++.++.|.+.+... .. ......+.|.|+|+.|+|||++|+.+++. .... .+.++.+.-..
T Consensus 84 ~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~--~~~~---~~~i~~~~l~~--- 155 (357)
T 3d8b_A 84 EDIAGVEFAKATIKEIVVWPMLRPDIFTGLRGPPKGILLFGPPGTGKTLIGKCIASQ--SGAT---FFSISASSLTS--- 155 (357)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGSCCSEEEEESSTTSSHHHHHHHHHHH--TTCE---EEEEEGGGGCC---
T ss_pred HHhCChHHHHHHHHHHHHHHhhChHhHhhccCCCceEEEECCCCCCHHHHHHHHHHH--cCCe---EEEEehHHhhc---
Confidence 46999999999998877421 00 00124567899999999999999999873 2222 23444332111
Q ss_pred HHHHHHHHcCCCCCCCccHHHHHHH-HHHHHhCCceEEEEeCCCCCC-----------ccChHHHHHhhcCC----CCCc
Q 047321 178 VAKAIIEGLGVSAFGLSEFESLMKQ-IQEYITGKKIFLVLDDVWDGD-----------YKKWDPFFSCLKNG----HHES 241 (807)
Q Consensus 178 ~~~~i~~~l~~~~~~~~~~~~~~~~-l~~~l~~k~~LlVlDdv~~~~-----------~~~~~~l~~~l~~~----~~gs 241 (807)
.. .......... +...-..++.+|+|||+..-. ......+...+... ..+.
T Consensus 156 -----------~~--~g~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~~~v 222 (357)
T 3d8b_A 156 -----------KW--VGEGEKMVRALFAVARCQQPAVIFIDEIDSLLSQRGDGEHESSRRIKTEFLVQLDGATTSSEDRI 222 (357)
T ss_dssp -----------SS--TTHHHHHHHHHHHHHHHTCSEEEEEETHHHHTBC------CHHHHHHHHHHHHHHC----CCCCE
T ss_pred -----------cc--cchHHHHHHHHHHHHHhcCCeEEEEeCchhhhccCCCCcchHHHHHHHHHHHHHhcccccCCCCE
Confidence 00 0111222222 222334678999999983210 01122333333321 2344
Q ss_pred EEEEEcCCHH-HHHHh--CCCceEeCCCCChhhHHHHHHHHHhccCCccCccchHHHHHHHHHHcCC-CHHHHHHHHHH
Q 047321 242 KILITTHDRS-VALQL--GSIDIIPVKELGEGECWLLFKQIAFLRRSFEDCEKLEPIGRKIASKCKG-LPLAAKVIGNL 316 (807)
Q Consensus 242 ~IliTTR~~~-v~~~~--~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~~~~I~~~c~g-lPLai~~~~~~ 316 (807)
.||.||.... +...+ .-...+.+...+.++..+++...+...... -..+....|++.+.| .+-.|..+...
T Consensus 223 ~vI~atn~~~~l~~~l~~Rf~~~i~i~~p~~~~r~~il~~~~~~~~~~----l~~~~l~~la~~t~G~s~~dl~~l~~~ 297 (357)
T 3d8b_A 223 LVVGATNRPQEIDEAARRRLVKRLYIPLPEASARKQIVINLMSKEQCC----LSEEEIEQIVQQSDAFSGADMTQLCRE 297 (357)
T ss_dssp EEEEEESCGGGBCHHHHTTCCEEEECCCCCHHHHHHHHHHHHHTSCBC----CCHHHHHHHHHHTTTCCHHHHHHHHHH
T ss_pred EEEEecCChhhCCHHHHhhCceEEEeCCcCHHHHHHHHHHHHhhcCCC----ccHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 5565665432 11111 112467899999999999998776432211 113457888999988 56666665543
No 183
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=97.96 E-value=0.00019 Score=75.41 Aligned_cols=184 Identities=17% Similarity=0.101 Sum_probs=104.9
Q ss_pred CccccccchHHHHHHHHhCC-------CCCCCCCceEEEEEccCCChHHHHHHHHHcCcccccccceEEEEEeCCCCCHH
Q 047321 104 GGVCGRVDEKNELLSKLLCG-------SSEQQKGLDVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSNTFEEI 176 (807)
Q Consensus 104 ~~~vGR~~~~~~l~~~L~~~-------~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~ 176 (807)
.+++|.++.++.|.+.+..+ .. .....+-+.|+|++|+|||+||+.+++. ....| +.++. .
T Consensus 18 ~di~G~~~~~~~l~~~i~~~~~~~~~~~~-~~~~~~~vLl~GppGtGKT~la~aia~~--~~~~~---~~v~~------~ 85 (322)
T 3eie_A 18 EDVAGLEGAKEALKEAVILPVKFPHLFKG-NRKPTSGILLYGPPGTGKSYLAKAVATE--ANSTF---FSVSS------S 85 (322)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCGGGCCT-TCCCCCEEEEECSSSSCHHHHHHHHHHH--HTCEE---EEEEH------H
T ss_pred HHhcChHHHHHHHHHHHHHHHhCHHHHhc-CCCCCCeEEEECCCCCcHHHHHHHHHHH--HCCCE---EEEch------H
Confidence 56999999999998877210 00 0223567999999999999999999873 32222 22322 1
Q ss_pred HHHHHHHHHcCCCCCCCccHHHHHHH-HHHHHhCCceEEEEeCCCCCCc-----------cChHHHHHhhc---CCCCCc
Q 047321 177 SVAKAIIEGLGVSAFGLSEFESLMKQ-IQEYITGKKIFLVLDDVWDGDY-----------KKWDPFFSCLK---NGHHES 241 (807)
Q Consensus 177 ~~~~~i~~~l~~~~~~~~~~~~~~~~-l~~~l~~k~~LlVlDdv~~~~~-----------~~~~~l~~~l~---~~~~gs 241 (807)
.+ .... ....+..... +...-..++.+|++||+..-.. .....+...+. ....+.
T Consensus 86 ~l----~~~~------~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~v 155 (322)
T 3eie_A 86 DL----VSKW------MGESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQGV 155 (322)
T ss_dssp HH----HTTT------GGGHHHHHHHHHHHHHHTSSEEEEEECGGGGSCC------CCTHHHHHHHHHHHGGGGTSCCCE
T ss_pred HH----hhcc------cchHHHHHHHHHHHHHhcCCeEEEechhhhhhccCCCCcchHHHHHHHHHHHHhccccccCCce
Confidence 11 1100 0112222222 2333356778999999953211 01233333333 223455
Q ss_pred EEEEEcCCHH-----HHHHhCCCceEeCCCCChhhHHHHHHHHHhccCCccCccchHHHHHHHHHHcCC-CHHHHHHHHH
Q 047321 242 KILITTHDRS-----VALQLGSIDIIPVKELGEGECWLLFKQIAFLRRSFEDCEKLEPIGRKIASKCKG-LPLAAKVIGN 315 (807)
Q Consensus 242 ~IliTTR~~~-----v~~~~~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~~~~I~~~c~g-lPLai~~~~~ 315 (807)
.||.||.... +...+ ...+.++..+.++-.+++...+...... .-......|++.+.| .+-.|..+..
T Consensus 156 ~vi~atn~~~~ld~al~~Rf--~~~i~~~~p~~~~r~~il~~~~~~~~~~----~~~~~l~~la~~t~g~sg~di~~l~~ 229 (322)
T 3eie_A 156 LVLGATNIPWQLDSAIRRRF--ERRIYIPLPDLAARTTMFEINVGDTPCV----LTKEDYRTLGAMTEGYSGSDIAVVVK 229 (322)
T ss_dssp EEEEEESCGGGSCHHHHHHC--CEEEECCCCCHHHHHHHHHHHHTTCCCC----CCHHHHHHHHHTTTTCCHHHHHHHHH
T ss_pred EEEEecCChhhCCHHHHccc--CeEEEeCCCCHHHHHHHHHHHhccCCCC----CCHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 5666776532 22222 3467889999999999999877432211 113356788888887 5656655543
No 184
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=97.92 E-value=0.00056 Score=71.73 Aligned_cols=188 Identities=15% Similarity=0.082 Sum_probs=103.2
Q ss_pred CccccccchHHHHHHHHhCC----C--CCCCCCceEEEEEccCCChHHHHHHHHHcCcccccccceEEEEEeCCCCCHHH
Q 047321 104 GGVCGRVDEKNELLSKLLCG----S--SEQQKGLDVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSNTFEEIS 177 (807)
Q Consensus 104 ~~~vGR~~~~~~l~~~L~~~----~--~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~ 177 (807)
.+++|.++.++.|.+.+..+ . .......+-|.|+|++|+|||+||+.+++... ... .+.++.+.-.
T Consensus 12 ~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~~-~~~---~~~i~~~~l~---- 83 (322)
T 1xwi_A 12 SDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEAN-NST---FFSISSSDLV---- 83 (322)
T ss_dssp GGSCSCHHHHHHHHHHHHHHHHCGGGSCTTCCCCSEEEEESSSSSCHHHHHHHHHHHTT-SCE---EEEEECCSSC----
T ss_pred HHhcCHHHHHHHHHHHHHHHHhCHHHHhCCCCCCceEEEECCCCccHHHHHHHHHHHcC-CCc---EEEEEhHHHH----
Confidence 46899998888888766321 0 00012346789999999999999999997320 111 2233332211
Q ss_pred HHHHHHHHcCCCCCCCccHHHHHHHHHHHHhCCceEEEEeCCCCCC-------ccCh----HHHHHhhcC---CCCCcEE
Q 047321 178 VAKAIIEGLGVSAFGLSEFESLMKQIQEYITGKKIFLVLDDVWDGD-------YKKW----DPFFSCLKN---GHHESKI 243 (807)
Q Consensus 178 ~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~-------~~~~----~~l~~~l~~---~~~gs~I 243 (807)
....+ .....+...+...-..++.+|++|++..-. .... ..+...+.. ...+..|
T Consensus 84 ----------~~~~g-~~~~~~~~lf~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~~v~v 152 (322)
T 1xwi_A 84 ----------SKWLG-ESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDNDGILV 152 (322)
T ss_dssp ----------CSSCC-SCHHHHHHHHHHHHHTSSEEEEEETTTGGGCCSSSCCTTHHHHHHHHHHHHHHCSSSCCTTEEE
T ss_pred ----------hhhhh-HHHHHHHHHHHHHHhcCCcEEEeecHHHhccccccccchHHHHHHHHHHHHHhcccccCCCEEE
Confidence 01111 112222222333335678999999995420 0011 122222322 1234455
Q ss_pred EEEcCCH-----HHHHHhCCCceEeCCCCChhhHHHHHHHHHhccCCccCccchHHHHHHHHHHcCCC-HHHHHHHHHH
Q 047321 244 LITTHDR-----SVALQLGSIDIIPVKELGEGECWLLFKQIAFLRRSFEDCEKLEPIGRKIASKCKGL-PLAAKVIGNL 316 (807)
Q Consensus 244 liTTR~~-----~v~~~~~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~~~~I~~~c~gl-PLai~~~~~~ 316 (807)
|.||... .+.. .-...+.++..+.++-.+++......... . --......|++.+.|. +-.|..+...
T Consensus 153 I~atn~~~~ld~al~r--Rf~~~i~i~~P~~~~r~~il~~~l~~~~~-~---l~~~~l~~la~~t~G~sgadl~~l~~~ 225 (322)
T 1xwi_A 153 LGATNIPWVLDSAIRR--RFEKRIYIPLPEPHARAAMFKLHLGTTQN-S---LTEADFRELGRKTDGYSGADISIIVRD 225 (322)
T ss_dssp EEEESCTTTSCHHHHH--TCCEEEECCCCCHHHHHHHHHHHHTTCCB-C---CCHHHHHHHHHTCTTCCHHHHHHHHHH
T ss_pred EEecCCcccCCHHHHh--hcCeEEEeCCcCHHHHHHHHHHHHhcCCC-C---CCHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 5566433 2222 22357888999999999999877632221 1 1134568889999886 5556655443
No 185
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=97.92 E-value=1.3e-05 Score=85.50 Aligned_cols=89 Identities=22% Similarity=0.109 Sum_probs=51.8
Q ss_pred CCCCCcccEEEEccCCCCCCCc-ccccCCCCccEEeeccCcccccccccccccCCCCCCCCeeeeccCCCcccCCccC-C
Q 047321 703 ISIMPRLSSLQIMNCRKLKALP-DYLLQTIALQKLSIYSCDLLEELPILEDRRTTDIPRLSSLAIWYCPKLKVLPDYL-L 780 (807)
Q Consensus 703 ~~~l~~L~~L~l~~c~~L~~lp-~~l~~l~~L~~L~l~~c~~l~~lP~~~~~~~~~l~~L~~L~i~~c~~l~~lP~~l-~ 780 (807)
+..+++|+.|+|+++..++.+| ..+..+++|+.|+|+++ .+..+|. ..+.++++|+.|++++ +++..+|..+ .
T Consensus 27 l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~---~~~~~l~~L~~L~l~~-N~l~~~~~~~~~ 101 (347)
T 2ifg_A 27 LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKS-GLRFVAP---DAFHFTPRLSRLNLSF-NALESLSWKTVQ 101 (347)
T ss_dssp SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSS-CCCEECT---TGGGSCSCCCEEECCS-SCCSCCCSTTTC
T ss_pred CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCC-ccceeCH---HHhcCCcCCCEEeCCC-CccceeCHHHcc
Confidence 4455666667666533666665 34666667777777664 4555540 3445666777777765 4556666433 3
Q ss_pred CCCcccccccccchhhh
Q 047321 781 RTTTLQAGEQDYENEKF 797 (807)
Q Consensus 781 ~l~~L~~L~l~~~~~~~ 797 (807)
.++ |+.|++.+|++..
T Consensus 102 ~~~-L~~l~l~~N~~~c 117 (347)
T 2ifg_A 102 GLS-LQELVLSGNPLHC 117 (347)
T ss_dssp SCC-CCEEECCSSCCCC
T ss_pred cCC-ceEEEeeCCCccC
Confidence 333 6777776666543
No 186
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=97.91 E-value=2e-05 Score=76.79 Aligned_cols=118 Identities=18% Similarity=0.151 Sum_probs=60.3
Q ss_pred hHHHHHHHHhCCCCCCCCCceEEEEEccCCChHHHHHHHHHcCcccccccceEEEEEeCCCCCHHHHHHHHHHHcCCCCC
Q 047321 112 EKNELLSKLLCGSSEQQKGLDVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSNTFEEISVAKAIIEGLGVSAF 191 (807)
Q Consensus 112 ~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~ 191 (807)
.++.+.+++..... ......+.|+|++|+|||+||+.+++. .......++|+++ ..+...+.......
T Consensus 37 ~~~~~~~~~~~~~~--~~~~~~~~l~G~~GtGKT~la~~i~~~--~~~~~~~~~~~~~------~~~~~~~~~~~~~~-- 104 (202)
T 2w58_A 37 AIRFAERFVAEYEP--GKKMKGLYLHGSFGVGKTYLLAAIANE--LAKRNVSSLIVYV------PELFRELKHSLQDQ-- 104 (202)
T ss_dssp HHHHHHHHHHHCCS--SCCCCEEEEECSTTSSHHHHHHHHHHH--HHTTTCCEEEEEH------HHHHHHHHHC---C--
T ss_pred HHHHHHHHHHHhhh--ccCCCeEEEECCCCCCHHHHHHHHHHH--HHHcCCeEEEEEh------HHHHHHHHHHhccc--
Confidence 44555555553321 112268899999999999999999873 3222334556654 23444444332211
Q ss_pred CCccHHHHHHHHHHHHhCCceEEEEeCCCCCCccChHH--HHH-hhcCC-CCCcEEEEEcCC
Q 047321 192 GLSEFESLMKQIQEYITGKKIFLVLDDVWDGDYKKWDP--FFS-CLKNG-HHESKILITTHD 249 (807)
Q Consensus 192 ~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~--l~~-~l~~~-~~gs~IliTTR~ 249 (807)
........ +.. .-+|||||++......|.. +.. .+... ..+.++|+||..
T Consensus 105 ---~~~~~~~~----~~~-~~~lilDei~~~~~~~~~~~~ll~~~l~~~~~~~~~~i~tsn~ 158 (202)
T 2w58_A 105 ---TMNEKLDY----IKK-VPVLMLDDLGAEAMSSWVRDDVFGPILQYRMFENLPTFFTSNF 158 (202)
T ss_dssp ---CCHHHHHH----HHH-SSEEEEEEECCC---CCGGGTTHHHHHHHHHHTTCCEEEEESS
T ss_pred ---hHHHHHHH----hcC-CCEEEEcCCCCCcCCHHHHHHHHHHHHHHHHhCCCCEEEEcCC
Confidence 11222222 222 2499999996643333322 222 23221 234467877764
No 187
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=97.85 E-value=5.6e-05 Score=78.45 Aligned_cols=148 Identities=14% Similarity=0.019 Sum_probs=93.4
Q ss_pred cccchHHHHHHHHhCCCCCCCCCceEEEEEccCCChHHHHHHHHHcCcc-cc-cccceEEEEEeCC-CCCHHHHHHHHHH
Q 047321 108 GRVDEKNELLSKLLCGSSEQQKGLDVISLVGLGGIGKTTLAQLAYNNDE-VK-RNFEKVIWVCVSN-TFEEISVAKAIIE 184 (807)
Q Consensus 108 GR~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~-~~-~~f~~~~wv~~~~-~~~~~~~~~~i~~ 184 (807)
|-++.++.|...+.. ++.+.+.++|+.|+||||+|+.+.+... .. .+.+ ..++..++ ...+.. .+++.+
T Consensus 1 g~~~~~~~L~~~i~~------~~~~~~Lf~Gp~G~GKtt~a~~la~~~~~~~~~~~d-~~~l~~~~~~~~id~-ir~li~ 72 (305)
T 2gno_A 1 GAKDQLETLKRIIEK------SEGISILINGEDLSYPREVSLELPEYVEKFPPKASD-VLEIDPEGENIGIDD-IRTIKD 72 (305)
T ss_dssp ---CHHHHHHHHHHT------CSSEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTT-EEEECCSSSCBCHHH-HHHHHH
T ss_pred ChHHHHHHHHHHHHC------CCCcEEEEECCCCCCHHHHHHHHHHhCchhhccCCC-EEEEcCCcCCCCHHH-HHHHHH
Confidence 445667777777763 2367899999999999999999976210 11 1223 34443322 222222 222333
Q ss_pred HcCCCCCCCccHHHHHHHHHHHHhCCceEEEEeCCCCCCccChHHHHHhhcCCCCCcEEEEEcCCH-HHHHHhCCCceEe
Q 047321 185 GLGVSAFGLSEFESLMKQIQEYITGKKIFLVLDDVWDGDYKKWDPFFSCLKNGHHESKILITTHDR-SVALQLGSIDIIP 263 (807)
Q Consensus 185 ~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~IliTTR~~-~v~~~~~~~~~~~ 263 (807)
.+.... ..+++-++|+|++..-.....+.++..+....+.+.+|++|.++ .+...+... .++
T Consensus 73 ~~~~~p----------------~~~~~kvviIdead~lt~~a~naLLk~LEep~~~t~fIl~t~~~~kl~~tI~SR-~~~ 135 (305)
T 2gno_A 73 FLNYSP----------------ELYTRKYVIVHDCERMTQQAANAFLKALEEPPEYAVIVLNTRRWHYLLPTIKSR-VFR 135 (305)
T ss_dssp HHTSCC----------------SSSSSEEEEETTGGGBCHHHHHHTHHHHHSCCTTEEEEEEESCGGGSCHHHHTT-SEE
T ss_pred HHhhcc----------------ccCCceEEEeccHHHhCHHHHHHHHHHHhCCCCCeEEEEEECChHhChHHHHce-eEe
Confidence 332111 02457799999997666666777888887777778888777654 333333444 899
Q ss_pred CCCCChhhHHHHHHHHH
Q 047321 264 VKELGEGECWLLFKQIA 280 (807)
Q Consensus 264 l~~L~~~~~~~Lf~~~a 280 (807)
++++++++..+.+.+.+
T Consensus 136 f~~l~~~~i~~~L~~~~ 152 (305)
T 2gno_A 136 VVVNVPKEFRDLVKEKI 152 (305)
T ss_dssp EECCCCHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHh
Confidence 99999999999998776
No 188
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.83 E-value=5.9e-06 Score=77.43 Aligned_cols=66 Identities=14% Similarity=0.216 Sum_probs=35.6
Q ss_pred cCcccccccccCCCccccchhhhccccCCCCC----CcccEEEEccCCCCCC--CcccccCCCCccEEeeccCccccc
Q 047321 675 AFPKLKSLEIDGMKELEEWNYRITRKENISIM----PRLSSLQIMNCRKLKA--LPDYLLQTIALQKLSIYSCDLLEE 746 (807)
Q Consensus 675 ~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~l----~~L~~L~l~~c~~L~~--lp~~l~~l~~L~~L~l~~c~~l~~ 746 (807)
.+++|+.|+|++|..+++... ..+..+ ++|+.|+|++|++++. +. .+..+++|++|+|++|+.+++
T Consensus 83 ~~~~L~~L~L~~C~~ItD~gL-----~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~-~L~~~~~L~~L~L~~c~~Itd 154 (176)
T 3e4g_A 83 GLQYVEKIRLCKCHYIEDGCL-----ERLSQLENLQKSMLEMEIISCGNVTDKGII-ALHHFRNLKYLFLSDLPGVKE 154 (176)
T ss_dssp TCSCCCEEEEESCTTCCHHHH-----HHHHTCHHHHHHCCEEEEESCTTCCHHHHH-HGGGCTTCCEEEEESCTTCCC
T ss_pred CCCCCCEEEeCCCCccCHHHH-----HHHHhcccccCCCCEEEcCCCCcCCHHHHH-HHhcCCCCCEEECCCCCCCCc
Confidence 566677777777666655433 111122 3566666666665542 11 233456666666666665543
No 189
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=97.80 E-value=1.3e-05 Score=73.42 Aligned_cols=109 Identities=12% Similarity=0.124 Sum_probs=62.7
Q ss_pred ccccccchHHHHHHHHhCCCCCCCCCceEEEEEccCCChHHHHHHHHHcCcccccccceEEEEEeCCCCCHHHHHHHHHH
Q 047321 105 GVCGRVDEKNELLSKLLCGSSEQQKGLDVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSNTFEEISVAKAIIE 184 (807)
Q Consensus 105 ~~vGR~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~ 184 (807)
+++|++..++++.+.+..... ...-|.|+|+.|+|||++|+.+++... -++.+.-. +... ..
T Consensus 5 ~~iG~s~~~~~l~~~~~~~~~----~~~~vll~G~~GtGKt~lA~~i~~~~~--------~~~~~~~~-~~~~---~~-- 66 (143)
T 3co5_A 5 DKLGNSAAIQEMNREVEAAAK----RTSPVFLTGEAGSPFETVARYFHKNGT--------PWVSPARV-EYLI---DM-- 66 (143)
T ss_dssp ---CCCHHHHHHHHHHHHHHT----CSSCEEEEEETTCCHHHHHGGGCCTTS--------CEECCSST-THHH---HC--
T ss_pred CceeCCHHHHHHHHHHHHHhC----CCCcEEEECCCCccHHHHHHHHHHhCC--------CeEEechh-hCCh---Hh--
Confidence 589999988888887753221 223477999999999999999987422 22222211 1110 00
Q ss_pred HcCCCCCCCccHHHHHHHHHHHHhCCceEEEEeCCCCCCccChHHHHHhhcCC-CCCcEEEEEcC
Q 047321 185 GLGVSAFGLSEFESLMKQIQEYITGKKIFLVLDDVWDGDYKKWDPFFSCLKNG-HHESKILITTH 248 (807)
Q Consensus 185 ~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~-~~gs~IliTTR 248 (807)
...+.+ ..+.-.|++||+..-.......+...+... ..+.+||+||.
T Consensus 67 ---------------~~~~~~--~a~~~~l~lDei~~l~~~~q~~Ll~~l~~~~~~~~~iI~~tn 114 (143)
T 3co5_A 67 ---------------PMELLQ--KAEGGVLYVGDIAQYSRNIQTGITFIIGKAERCRVRVIASCS 114 (143)
T ss_dssp ---------------HHHHHH--HTTTSEEEEEECTTCCHHHHHHHHHHHHHHTTTTCEEEEEEE
T ss_pred ---------------hhhHHH--hCCCCeEEEeChHHCCHHHHHHHHHHHHhCCCCCEEEEEecC
Confidence 011111 123457899999766555555566666543 34567777765
No 190
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=97.77 E-value=0.00026 Score=70.19 Aligned_cols=126 Identities=12% Similarity=0.099 Sum_probs=71.9
Q ss_pred CceEEEEEccCCChHHHHHHHHHcCcccc-c--ccc-eEEEEEeCCCC---CHHH-----------HHHHHHHHcCCC--
Q 047321 130 GLDVISLVGLGGIGKTTLAQLAYNNDEVK-R--NFE-KVIWVCVSNTF---EEIS-----------VAKAIIEGLGVS-- 189 (807)
Q Consensus 130 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~-~--~f~-~~~wv~~~~~~---~~~~-----------~~~~i~~~l~~~-- 189 (807)
.-.+++|+|++|+|||||++.++.-.... + .++ .+.|+.-...+ ++.+ ....+++..+..
T Consensus 33 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~ 112 (229)
T 2pze_A 33 RGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGRISFCSQFSWIMPGTIKENIIFGVSYDEYRYRSVIKACQLEED 112 (229)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEECSCEEEECSSCCCCSBCHHHHHHTTSCCCHHHHHHHHHHTTCHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCcCCccEEEECCEEEEEecCCcccCCCHHHHhhccCCcChHHHHHHHHHhCcHHH
Confidence 34689999999999999999997632211 0 111 12233211110 1111 111222221110
Q ss_pred ---------------CCCCccHHHHHHHHHHHHhCCceEEEEeCCCCC-CccChHHHHHhh-cCCCCCcEEEEEcCCHHH
Q 047321 190 ---------------AFGLSEFESLMKQIQEYITGKKIFLVLDDVWDG-DYKKWDPFFSCL-KNGHHESKILITTHDRSV 252 (807)
Q Consensus 190 ---------------~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~-~~~~~~~l~~~l-~~~~~gs~IliTTR~~~v 252 (807)
.......+...-.+.+.+-.++-+++||++... |......+...+ .....|..||++|++.+.
T Consensus 113 ~~~~~~~~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~~tvi~vtH~~~~ 192 (229)
T 2pze_A 113 ISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKMEH 192 (229)
T ss_dssp HTTSTTGGGSCBCTTCTTSCHHHHHHHHHHHHHHSCCSEEEEESTTTTSCHHHHHHHHHHCCCCCTTTSEEEEECCCHHH
T ss_pred HHhCcccccccccCCCCcCCHHHHHHHHHHHHHhcCCCEEEEECcccCCCHHHHHHHHHHHHHHhhCCCEEEEEcCChHH
Confidence 012233444455677888889999999999765 554555566643 333447789999999877
Q ss_pred HHH
Q 047321 253 ALQ 255 (807)
Q Consensus 253 ~~~ 255 (807)
+..
T Consensus 193 ~~~ 195 (229)
T 2pze_A 193 LKK 195 (229)
T ss_dssp HHH
T ss_pred HHh
Confidence 654
No 191
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=97.77 E-value=0.00028 Score=76.47 Aligned_cols=107 Identities=10% Similarity=0.038 Sum_probs=61.0
Q ss_pred cCcccccccccCCCc----cccchhhhccccCCCCCCcccEEEEccCCCCCCCcc-cccCCCCccEEeeccCcccccccc
Q 047321 675 AFPKLKSLEIDGMKE----LEEWNYRITRKENISIMPRLSSLQIMNCRKLKALPD-YLLQTIALQKLSIYSCDLLEELPI 749 (807)
Q Consensus 675 ~l~~L~~L~l~~~~~----l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~lp~-~l~~l~~L~~L~l~~c~~l~~lP~ 749 (807)
++++|+.+.+.+... ...++. ..+..+++|+.+.+.+ .++.++. .+..+++|+.|.|.. ++..++
T Consensus 269 ~c~~L~~l~l~~~~~~~~~~~~I~~-----~aF~~c~~L~~l~l~~--~i~~I~~~aF~~c~~L~~l~lp~--~l~~I~- 338 (401)
T 4fdw_A 269 YCPELAEVTTYGSTFNDDPEAMIHP-----YCLEGCPKLARFEIPE--SIRILGQGLLGGNRKVTQLTIPA--NVTQIN- 338 (401)
T ss_dssp TCTTCCEEEEESSCCCCCTTCEECT-----TTTTTCTTCCEECCCT--TCCEECTTTTTTCCSCCEEEECT--TCCEEC-
T ss_pred CCCCCCEEEeCCccccCCcccEECH-----HHhhCCccCCeEEeCC--ceEEEhhhhhcCCCCccEEEECc--cccEEc-
Confidence 566677776654211 011221 2345667777777763 4666653 356677788888754 355554
Q ss_pred cccccCCCCCCCCeeeeccCCCcccCC-ccCCCCC-cccccccccchh
Q 047321 750 LEDRRTTDIPRLSSLAIWYCPKLKVLP-DYLLRTT-TLQAGEQDYENE 795 (807)
Q Consensus 750 ~~~~~~~~l~~L~~L~i~~c~~l~~lP-~~l~~l~-~L~~L~l~~~~~ 795 (807)
...+.++ +|+.+.+.++ .+..++ ..+..++ .++.|.+..+.+
T Consensus 339 --~~aF~~~-~L~~l~l~~n-~~~~l~~~~F~~~~~~l~~l~vp~~~~ 382 (401)
T 4fdw_A 339 --FSAFNNT-GIKEVKVEGT-TPPQVFEKVWYGFPDDITVIRVPAESV 382 (401)
T ss_dssp --TTSSSSS-CCCEEEECCS-SCCBCCCSSCCCSCTTCCEEEECGGGH
T ss_pred --HHhCCCC-CCCEEEEcCC-CCcccccccccCCCCCccEEEeCHHHH
Confidence 1455666 7888888764 344444 4455553 566676665543
No 192
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=97.76 E-value=1.5e-05 Score=73.33 Aligned_cols=87 Identities=15% Similarity=0.073 Sum_probs=51.3
Q ss_pred ceEEEEEccCCChHHHHHHHHHcCcccccccceEEEEEeCCCCCHHHHHHHHHHHcCCCCCCCccHHHHHHHHHHHHhCC
Q 047321 131 LDVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSNTFEEISVAKAIIEGLGVSAFGLSEFESLMKQIQEYITGK 210 (807)
Q Consensus 131 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k 210 (807)
...++|+|++|+|||||++.++...... .+ .++++........ .+..+
T Consensus 36 g~~~~l~G~~G~GKTtL~~~i~~~~~~~-g~-~~~~~~~~~~~~~------------------------------~~~~~ 83 (149)
T 2kjq_A 36 GQFIYVWGEEGAGKSHLLQAWVAQALEA-GK-NAAYIDAASMPLT------------------------------DAAFE 83 (149)
T ss_dssp CSEEEEESSSTTTTCHHHHHHHHHHHTT-TC-CEEEEETTTSCCC------------------------------GGGGG
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHhc-CC-cEEEEcHHHhhHH------------------------------HHHhC
Confidence 4689999999999999999998732211 11 2455554332211 01235
Q ss_pred ceEEEEeCCCCCCccChHHHHHhhcCC-CCCc-EEEEEcCC
Q 047321 211 KIFLVLDDVWDGDYKKWDPFFSCLKNG-HHES-KILITTHD 249 (807)
Q Consensus 211 ~~LlVlDdv~~~~~~~~~~l~~~l~~~-~~gs-~IliTTR~ 249 (807)
.-+||+||+...+...-+.+...+... ..|. +||+||+.
T Consensus 84 ~~lLilDE~~~~~~~~~~~l~~li~~~~~~g~~~iiits~~ 124 (149)
T 2kjq_A 84 AEYLAVDQVEKLGNEEQALLFSIFNRFRNSGKGFLLLGSEY 124 (149)
T ss_dssp CSEEEEESTTCCCSHHHHHHHHHHHHHHHHTCCEEEEEESS
T ss_pred CCEEEEeCccccChHHHHHHHHHHHHHHHcCCcEEEEECCC
Confidence 678999999664333333344444321 2233 48888874
No 193
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=97.76 E-value=5e-05 Score=90.96 Aligned_cols=155 Identities=17% Similarity=0.208 Sum_probs=80.6
Q ss_pred CccccccchHHHHHHHHhCCCCCCCCCceEEEEEccCCChHHHHHHHHHcCccc---cccc-c-eEEEEEeCCCCCHHHH
Q 047321 104 GGVCGRVDEKNELLSKLLCGSSEQQKGLDVISLVGLGGIGKTTLAQLAYNNDEV---KRNF-E-KVIWVCVSNTFEEISV 178 (807)
Q Consensus 104 ~~~vGR~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~---~~~f-~-~~~wv~~~~~~~~~~~ 178 (807)
..++||+++++++++.|... ..+.+.|+|++|+||||+|+.+++...- .... . .+++++++.-..
T Consensus 170 d~viGr~~~i~~l~~~l~~~------~~~~vlL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~l~~---- 239 (854)
T 1qvr_A 170 DPVIGRDEEIRRVIQILLRR------TKNNPVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVSLQMGSLLA---- 239 (854)
T ss_dssp CCCCSCHHHHHHHHHHHHCS------SCCCCEEEECTTSCHHHHHHHHHHHHHHTCSCTTSTTCEEEEECC---------
T ss_pred cccCCcHHHHHHHHHHHhcC------CCCceEEEcCCCCCHHHHHHHHHHHHhcCCCchhhcCCeEEEeehHHhhc----
Confidence 35899999999999999743 2345789999999999999999873110 0001 1 233333221110
Q ss_pred HHHHHHHcCCCCCCCccHHHHHHHHHHHH-h-CCceEEEEeCCCCCC--------ccChHHHHHhhcCCCCCcEEEEEcC
Q 047321 179 AKAIIEGLGVSAFGLSEFESLMKQIQEYI-T-GKKIFLVLDDVWDGD--------YKKWDPFFSCLKNGHHESKILITTH 248 (807)
Q Consensus 179 ~~~i~~~l~~~~~~~~~~~~~~~~l~~~l-~-~k~~LlVlDdv~~~~--------~~~~~~l~~~l~~~~~gs~IliTTR 248 (807)
+.. ...+.+.....+...+ . +++.+|++||+..-. ......+...+..+ +..+|.+|.
T Consensus 240 --------g~~--~~g~~~~~l~~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~g~~~~~~~L~~~l~~~--~i~~I~at~ 307 (854)
T 1qvr_A 240 --------GAK--YRGEFEERLKAVIQEVVQSQGEVILFIDELHTVVGAGKAEGAVDAGNMLKPALARG--ELRLIGATT 307 (854)
T ss_dssp ----------------CHHHHHHHHHHHHHTTCSSEEEEECCC-------------------HHHHHTT--CCCEEEEEC
T ss_pred --------cCc--cchHHHHHHHHHHHHHHhcCCCeEEEEecHHHHhccCCccchHHHHHHHHHHHhCC--CeEEEEecC
Confidence 000 0112222222332333 2 368899999995421 11112244444332 234555554
Q ss_pred CHHHHHH-----h-CCCceEeCCCCChhhHHHHHHHHH
Q 047321 249 DRSVALQ-----L-GSIDIIPVKELGEGECWLLFKQIA 280 (807)
Q Consensus 249 ~~~v~~~-----~-~~~~~~~l~~L~~~~~~~Lf~~~a 280 (807)
....... + .-...+.+++++.++..+++....
T Consensus 308 ~~~~~~~~~d~aL~rRf~~i~l~~p~~~e~~~iL~~~~ 345 (854)
T 1qvr_A 308 LDEYREIEKDPALERRFQPVYVDEPTVEETISILRGLK 345 (854)
T ss_dssp HHHHHHHTTCTTTCSCCCCEEECCCCHHHHHHHHHHHH
T ss_pred chHHhhhccCHHHHhCCceEEeCCCCHHHHHHHHHhhh
Confidence 3332111 1 112358899999999999997543
No 194
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=97.76 E-value=3.9e-06 Score=89.54 Aligned_cols=65 Identities=17% Similarity=0.105 Sum_probs=32.8
Q ss_pred CCCCccEEeeccCcccccccccccccCCCCCCCCeeeeccCCCccc-----CCccCCCCCcccccccccchh
Q 047321 729 QTIALQKLSIYSCDLLEELPILEDRRTTDIPRLSSLAIWYCPKLKV-----LPDYLLRTTTLQAGEQDYENE 795 (807)
Q Consensus 729 ~l~~L~~L~l~~c~~l~~lP~~~~~~~~~l~~L~~L~i~~c~~l~~-----lP~~l~~l~~L~~L~l~~~~~ 795 (807)
.+++|+.|++.+|......+..- .....+++|++|+++. +.++. ++..+.++++|+.|++++|.+
T Consensus 250 ~~p~Lr~L~L~~~~i~~~~~~~l-a~a~~~~~L~~LdLs~-n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i 319 (362)
T 2ra8_A 250 RFPNLKWLGIVDAEEQNVVVEMF-LESDILPQLETMDISA-GVLTDEGARLLLDHVDKIKHLKFINMKYNYL 319 (362)
T ss_dssp TCTTCCEEEEESCTTHHHHHHHH-HHCSSGGGCSEEECCS-SCCBHHHHHHHHTTHHHHTTCSEEECCSBBC
T ss_pred CCCCcCEEeCCCCCCchHHHHHH-HhCccCCCCCEEECCC-CCCChHHHHHHHhhcccCCcceEEECCCCcC
Confidence 35666666666654322111000 0012456667777654 33432 444445566677777766654
No 195
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=97.74 E-value=0.00047 Score=71.63 Aligned_cols=181 Identities=16% Similarity=0.100 Sum_probs=100.7
Q ss_pred CccccccchHHHHHHHHhCCCC-------CCCCCceEEEEEccCCChHHHHHHHHHcCcccccccceEEEEEeCCCCCHH
Q 047321 104 GGVCGRVDEKNELLSKLLCGSS-------EQQKGLDVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSNTFEEI 176 (807)
Q Consensus 104 ~~~vGR~~~~~~l~~~L~~~~~-------~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~ 176 (807)
.+++|.++.+++|.+.+...-. -.-...+.|.|+|++|+|||+||+.+++. ....| +.++ ..
T Consensus 15 ~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la~ala~~--~~~~~-----i~v~----~~ 83 (301)
T 3cf0_A 15 EDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANE--CQANF-----ISIK----GP 83 (301)
T ss_dssp GGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHHHHHHHH--TTCEE-----EEEC----HH
T ss_pred HHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHHHHHHHH--hCCCE-----EEEE----hH
Confidence 4689999888888877643100 00124567899999999999999999973 22222 2221 22
Q ss_pred HHHHHHHHHcCCCCCCCccHHHHHHHHHHHHhCCceEEEEeCCCCCC--------------ccChHHHHHhhcCC--CCC
Q 047321 177 SVAKAIIEGLGVSAFGLSEFESLMKQIQEYITGKKIFLVLDDVWDGD--------------YKKWDPFFSCLKNG--HHE 240 (807)
Q Consensus 177 ~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~--------------~~~~~~l~~~l~~~--~~g 240 (807)
.+.... ++.. ...+...+.......+.+|++|++..-. ......+...+... ..+
T Consensus 84 ~l~~~~---~g~~------~~~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~ 154 (301)
T 3cf0_A 84 ELLTMW---FGES------EANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKN 154 (301)
T ss_dssp HHHHHH---HTTC------TTHHHHHHHHHHHTCSEEEEECSTTHHHHHHTTTTCCSSCSCCHHHHHHHHHHHSSCTTSS
T ss_pred HHHhhh---cCch------HHHHHHHHHHHHhcCCeEEEEEChHHHhhccCCCcCCcchHHHHHHHHHHHHhhcccCCCC
Confidence 222221 1111 1112233344445678999999995210 01123344444321 335
Q ss_pred cEEEEEcCCHHHH-HH-hC---CCceEeCCCCChhhHHHHHHHHHhccCCccCccchHHHHHHHHHHcCCCHHH
Q 047321 241 SKILITTHDRSVA-LQ-LG---SIDIIPVKELGEGECWLLFKQIAFLRRSFEDCEKLEPIGRKIASKCKGLPLA 309 (807)
Q Consensus 241 s~IliTTR~~~v~-~~-~~---~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~~~~I~~~c~glPLa 309 (807)
..||.||...+.. .. .. -...+.++..+.++-.+++....-.... .....+ ..+++.+.|.|-+
T Consensus 155 v~vi~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~l~~~~~-~~~~~~----~~la~~~~g~sg~ 223 (301)
T 3cf0_A 155 VFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPV-AKDVDL----EFLAKMTNGFSGA 223 (301)
T ss_dssp EEEEEEESCGGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCB-CSSCCH----HHHHHTCSSCCHH
T ss_pred EEEEEecCCccccChHHhcCCccceEEecCCcCHHHHHHHHHHHHccCCC-CccchH----HHHHHHcCCCCHH
Confidence 5677777655321 11 11 1347889999999999998776633221 112222 4566677777644
No 196
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=97.72 E-value=0.00013 Score=74.01 Aligned_cols=129 Identities=16% Similarity=0.170 Sum_probs=75.4
Q ss_pred CceEEEEEccCCChHHHHHHHHHcCcc------------ccc-----ccceEEEEEeCC----CC---------------
Q 047321 130 GLDVISLVGLGGIGKTTLAQLAYNNDE------------VKR-----NFEKVIWVCVSN----TF--------------- 173 (807)
Q Consensus 130 ~~~vi~I~G~gGiGKTtLa~~v~~~~~------------~~~-----~f~~~~wv~~~~----~~--------------- 173 (807)
.-.+++|+|++|+|||||++.+..-.. +.. ....+.++.-.. ..
T Consensus 36 ~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~ 115 (266)
T 4g1u_C 36 SGEMVAIIGPNGAGKSTLLRLLTGYLSPSHGECHLLGQNLNSWQPKALARTRAVMRQYSELAFPFSVSEVIQMGRAPYGG 115 (266)
T ss_dssp TTCEEEEECCTTSCHHHHHHHHTSSSCCSSCEEEETTEETTTSCHHHHHHHEEEECSCCCCCSCCBHHHHHHGGGTTSCS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcCCHHHHhheEEEEecCCccCCCCCHHHHHHhhhhhcCc
Confidence 456999999999999999999864211 000 001122221111 01
Q ss_pred -CHHHHHHHHHHHcCCCCC------CCccHHHHHHHHHHHHhC------CceEEEEeCCCCC-CccChHHHHHhhcCC--
Q 047321 174 -EEISVAKAIIEGLGVSAF------GLSEFESLMKQIQEYITG------KKIFLVLDDVWDG-DYKKWDPFFSCLKNG-- 237 (807)
Q Consensus 174 -~~~~~~~~i~~~l~~~~~------~~~~~~~~~~~l~~~l~~------k~~LlVlDdv~~~-~~~~~~~l~~~l~~~-- 237 (807)
...+...++++.++.... .....+...-.+.+.+.. ++-+|+||++... |...-..+...+...
T Consensus 116 ~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~QRv~iAraL~~~~~~~~~p~lLllDEPts~LD~~~~~~i~~~l~~l~~ 195 (266)
T 4g1u_C 116 SQDRQALQQVMAQTDCLALAQRDYRVLSGGEQQRVQLARVLAQLWQPQPTPRWLFLDEPTSALDLYHQQHTLRLLRQLTR 195 (266)
T ss_dssp TTHHHHHHHHHHHTTCSTTTTSBGGGCCHHHHHHHHHHHHHHHTCCSSCCCEEEEECCCCSSCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHHHHHHHhcccccCCCCCEEEEeCccccCCHHHHHHHHHHHHHHHH
Confidence 122334556666654321 122334444557777776 8999999999765 444444555555432
Q ss_pred CCCcEEEEEcCCHHHHHHhCC
Q 047321 238 HHESKILITTHDRSVALQLGS 258 (807)
Q Consensus 238 ~~gs~IliTTR~~~v~~~~~~ 258 (807)
..|..||++|++.+.+..++.
T Consensus 196 ~~~~tvi~vtHdl~~~~~~~d 216 (266)
T 4g1u_C 196 QEPLAVCCVLHDLNLAALYAD 216 (266)
T ss_dssp HSSEEEEEECSCHHHHHHHCS
T ss_pred cCCCEEEEEEcCHHHHHHhCC
Confidence 235579999999887765443
No 197
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=97.71 E-value=0.00014 Score=72.83 Aligned_cols=61 Identities=15% Similarity=0.073 Sum_probs=40.5
Q ss_pred cHHHHHHHHHHHHhCCceEEEEeCCCCC-CccChHHHHHhhcCCCCCcEEEEEcCCHHHHHH
Q 047321 195 EFESLMKQIQEYITGKKIFLVLDDVWDG-DYKKWDPFFSCLKNGHHESKILITTHDRSVALQ 255 (807)
Q Consensus 195 ~~~~~~~~l~~~l~~k~~LlVlDdv~~~-~~~~~~~l~~~l~~~~~gs~IliTTR~~~v~~~ 255 (807)
..+...-.+.+.+-.++-+++||++... |......+...+.....|..||++|++.+.+..
T Consensus 142 gGq~qrv~lAral~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~tvi~vtH~~~~~~~ 203 (243)
T 1mv5_A 142 GGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQKALDSLMKGRTTLVIAHRLSTIVD 203 (243)
T ss_dssp HHHHHHHHHHHHHHHCCSEEEEECCSCSSCSSSCCHHHHHHHHHHTTSEEEEECCSHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHhcCCCEEEEEeCChHHHHh
Confidence 3444455577778888889999999764 444444444444332247789999999887654
No 198
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=97.70 E-value=0.00022 Score=71.81 Aligned_cols=128 Identities=17% Similarity=0.154 Sum_probs=73.7
Q ss_pred CceEEEEEccCCChHHHHHHHHHcCcccc------------c---cc-ceEEEEEeCC----CCCHHH------------
Q 047321 130 GLDVISLVGLGGIGKTTLAQLAYNNDEVK------------R---NF-EKVIWVCVSN----TFEEIS------------ 177 (807)
Q Consensus 130 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~------------~---~f-~~~~wv~~~~----~~~~~~------------ 177 (807)
.-.+++|+|++|+|||||++.++.-.... . .+ ..+.++.-.. ..++.+
T Consensus 40 ~Gei~~l~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~i~~v~q~~~l~~~ltv~enl~~~~~~~~~~ 119 (256)
T 1vpl_A 40 EGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVEEPHEVRKLISYLPEEAGAYRNMQGIEYLRFVAGFYASS 119 (256)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTCHHHHHTTEEEECTTCCCCTTSBHHHHHHHHHHHHCCC
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCccHHHHhhcEEEEcCCCCCCCCCcHHHHHHHHHHHcCCC
Confidence 45699999999999999999986521100 0 00 1123332111 112211
Q ss_pred ------HHHHHHHHcCCCC------CCCccHHHHHHHHHHHHhCCceEEEEeCCCCC-CccChHHHHHhhcCC-CCCcEE
Q 047321 178 ------VAKAIIEGLGVSA------FGLSEFESLMKQIQEYITGKKIFLVLDDVWDG-DYKKWDPFFSCLKNG-HHESKI 243 (807)
Q Consensus 178 ------~~~~i~~~l~~~~------~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~-~~~~~~~l~~~l~~~-~~gs~I 243 (807)
...++++.++... ......+...-.+.+.+..++-+++||++... |......+...+... ..|..|
T Consensus 120 ~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~ti 199 (256)
T 1vpl_A 120 SSEIEEMVERATEIAGLGEKIKDRVSTYSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQEGLTI 199 (256)
T ss_dssp HHHHHHHHHHHHHHHCCGGGGGSBGGGCCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEE
T ss_pred hHHHHHHHHHHHHHCCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCccccCHHHHHHHHHHHHHHHhCCCEE
Confidence 1223444444321 11223344455577888899999999999765 444444455554432 246789
Q ss_pred EEEcCCHHHHHHhC
Q 047321 244 LITTHDRSVALQLG 257 (807)
Q Consensus 244 liTTR~~~v~~~~~ 257 (807)
|++|++.+.+..+.
T Consensus 200 iivtHd~~~~~~~~ 213 (256)
T 1vpl_A 200 LVSSHNMLEVEFLC 213 (256)
T ss_dssp EEEECCHHHHTTTC
T ss_pred EEEcCCHHHHHHHC
Confidence 99999987765543
No 199
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=97.70 E-value=8.8e-05 Score=82.21 Aligned_cols=144 Identities=17% Similarity=0.170 Sum_probs=77.2
Q ss_pred ccccccchHHHHHHHHhCCCCCCCCCceEEEEEccCCChHHHHHHHHHcCcccccc-----c-c-eEEEEEeCCCCCHHH
Q 047321 105 GVCGRVDEKNELLSKLLCGSSEQQKGLDVISLVGLGGIGKTTLAQLAYNNDEVKRN-----F-E-KVIWVCVSNTFEEIS 177 (807)
Q Consensus 105 ~~vGR~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~-----f-~-~~~wv~~~~~~~~~~ 177 (807)
.+|||+++++++++.+... ...-+.|+|++|+|||++|+.++.. +... . + ..+.++.+.
T Consensus 181 ~iiGr~~~i~~l~~~l~r~------~~~~~LL~G~pG~GKT~la~~la~~--l~~~~~p~~l~~~~~~~l~~~~------ 246 (468)
T 3pxg_A 181 PVIGRSKEIQRVIEVLSRR------TKNNPVLIGEPGVGKTAIAEGLAQQ--IINNEVPEILRDKRVMTLDMGT------ 246 (468)
T ss_dssp CCCCCHHHHHHHHHHHHCS------SSCEEEEESCTTTTTHHHHHHHHHH--HHSSCSCTTTSSCCEECC----------
T ss_pred CccCcHHHHHHHHHHHhcc------CCCCeEEECCCCCCHHHHHHHHHHH--HHhCCCChhhcCCeEEEeeCCc------
Confidence 5999999999999999742 2345689999999999999999863 2111 0 1 112222220
Q ss_pred HHHHHHHHcCCCCCCCccHHHHHHHHHHHHhCCceEEEEeCCCCCCccChHHHHHhhcCCCCCcEEEEEcCCHHHHHHh-
Q 047321 178 VAKAIIEGLGVSAFGLSEFESLMKQIQEYITGKKIFLVLDDVWDGDYKKWDPFFSCLKNGHHESKILITTHDRSVALQL- 256 (807)
Q Consensus 178 ~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~IliTTR~~~v~~~~- 256 (807)
...+. ..... ...+...-...+.+|++|. .......+...+.. ...++|.+|.........
T Consensus 247 -------~~~g~--~e~~~---~~~~~~~~~~~~~iLfiD~----~~~a~~~L~~~L~~--g~v~vI~at~~~e~~~~~~ 308 (468)
T 3pxg_A 247 -------KYRGE--FEDRL---KKVMDEIRQAGNIILFIDA----AIDASNILKPSLAR--GELQCIGATTLDEYRKYIE 308 (468)
T ss_dssp ---------------CTTH---HHHHHHHHTCCCCEEEECC------------CCCTTS--SSCEEEEECCTTTTHHHHT
T ss_pred -------cccch--HHHHH---HHHHHHHHhcCCeEEEEeC----chhHHHHHHHhhcC--CCEEEEecCCHHHHHHHhh
Confidence 00000 00111 2222223345678999991 11222223333322 234566555544321111
Q ss_pred ------CCCceEeCCCCChhhHHHHHHHHH
Q 047321 257 ------GSIDIIPVKELGEGECWLLFKQIA 280 (807)
Q Consensus 257 ------~~~~~~~l~~L~~~~~~~Lf~~~a 280 (807)
.-...+.++..+.++..+++...+
T Consensus 309 ~~~al~~Rf~~i~v~~p~~e~~~~iL~~~~ 338 (468)
T 3pxg_A 309 KDAALERRFQPIQVDQPSVDESIQILQGLR 338 (468)
T ss_dssp TCSHHHHSEEEEECCCCCHHHHHHHHHHTT
T ss_pred cCHHHHHhCccceeCCCCHHHHHHHHHHHH
Confidence 112468999999999999998754
No 200
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=97.69 E-value=0.00027 Score=70.41 Aligned_cols=125 Identities=15% Similarity=0.152 Sum_probs=70.7
Q ss_pred CceEEEEEccCCChHHHHHHHHHcCcccc-c--ccc-eEEEEEeCCCC---CHH-----------HHHHHHHHH------
Q 047321 130 GLDVISLVGLGGIGKTTLAQLAYNNDEVK-R--NFE-KVIWVCVSNTF---EEI-----------SVAKAIIEG------ 185 (807)
Q Consensus 130 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~-~--~f~-~~~wv~~~~~~---~~~-----------~~~~~i~~~------ 185 (807)
.-.+++|+|++|+|||||++.+..-.... + .++ .+.++.-...+ ++. .....+.+.
T Consensus 30 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~i~~v~Q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~ 109 (237)
T 2cbz_A 30 EGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVAIKGSVAYVPQQAWIQNDSLRENILFGCQLEEPYYRSVIQACALLPD 109 (237)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTCSEEEEEEEEECSCEEEECSSCCCCSEEHHHHHHTTSCCCTTHHHHHHHHTTCHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEEEEcCCCcCCCcCHHHHhhCccccCHHHHHHHHHHHhhHHH
Confidence 45699999999999999999997632211 0 111 12222111000 110 011222221
Q ss_pred cCC-----------CCCCCccHHHHHHHHHHHHhCCceEEEEeCCCCC-CccChHHHHHhhc---CCCCCcEEEEEcCCH
Q 047321 186 LGV-----------SAFGLSEFESLMKQIQEYITGKKIFLVLDDVWDG-DYKKWDPFFSCLK---NGHHESKILITTHDR 250 (807)
Q Consensus 186 l~~-----------~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~-~~~~~~~l~~~l~---~~~~gs~IliTTR~~ 250 (807)
++. ........+...-.+.+.+-.++-+++||++... |......+...+. ....|..||++|++.
T Consensus 110 ~~~~~~~~~~~~~~~~~~LSgGqkqRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~~~~tviivtH~~ 189 (237)
T 2cbz_A 110 LEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFENVIGPKGMLKNKTRILVTHSM 189 (237)
T ss_dssp HTTSTTGGGSEESTTSBCCCHHHHHHHHHHHHHHHCCSEEEEESTTTTSCHHHHHHHHHHTTSTTSTTTTSEEEEECSCS
T ss_pred HHhccccccccccCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHHHhhcCCCEEEEEecCh
Confidence 111 1112233444455677788888899999999765 5444555666663 223577899999997
Q ss_pred HHHH
Q 047321 251 SVAL 254 (807)
Q Consensus 251 ~v~~ 254 (807)
+.+.
T Consensus 190 ~~~~ 193 (237)
T 2cbz_A 190 SYLP 193 (237)
T ss_dssp TTGG
T ss_pred HHHH
Confidence 7654
No 201
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=97.68 E-value=0.00017 Score=75.86 Aligned_cols=129 Identities=16% Similarity=0.158 Sum_probs=77.3
Q ss_pred CceEEEEEccCCChHHHHHHHHHcCcccc------------c-------cc-ceEEEEEeCC----CCCHH---------
Q 047321 130 GLDVISLVGLGGIGKTTLAQLAYNNDEVK------------R-------NF-EKVIWVCVSN----TFEEI--------- 176 (807)
Q Consensus 130 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~------------~-------~f-~~~~wv~~~~----~~~~~--------- 176 (807)
.-.+++|+|++|+|||||++.+..-.... . .+ ..+.+|.-.. ..++.
T Consensus 53 ~Gei~~IiGpnGaGKSTLlr~i~GL~~p~~G~I~i~G~~i~~~~~~~~~~~r~~Ig~v~Q~~~l~~~~TV~env~~~~~~ 132 (366)
T 3tui_C 53 AGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTKARRQIGMIFQHFNLLSSRTVFGNVALPLEL 132 (366)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECSSCCHHHHHHHHTTEEEECSSCCCCTTSCHHHHHHHHHHH
T ss_pred CCCEEEEEcCCCchHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHHHhCcEEEEeCCCccCCCCCHHHHHHHHHHh
Confidence 45799999999999999999986421100 0 00 1123332111 11221
Q ss_pred ---------HHHHHHHHHcCCCC------CCCccHHHHHHHHHHHHhCCceEEEEeCCCCC-CccChHHHHHhhcCC--C
Q 047321 177 ---------SVAKAIIEGLGVSA------FGLSEFESLMKQIQEYITGKKIFLVLDDVWDG-DYKKWDPFFSCLKNG--H 238 (807)
Q Consensus 177 ---------~~~~~i~~~l~~~~------~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~-~~~~~~~l~~~l~~~--~ 238 (807)
+...++++.++... ......+...-.+.+.+..++-+|++|++... |...-..+...+..- .
T Consensus 133 ~~~~~~~~~~~v~~lL~~vgL~~~~~~~~~~LSGGqkQRVaIArAL~~~P~lLLlDEPTs~LD~~~~~~i~~lL~~l~~~ 212 (366)
T 3tui_C 133 DNTPKDEVKRRVTELLSLVGLGDKHDSYPSNLSGGQKQRVAIARALASNPKVLLCDQATSALDPATTRSILELLKDINRR 212 (366)
T ss_dssp SCCCHHHHHHHHHHHHHHHTCGGGTTCCTTTSCHHHHHHHHHHHHTTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHh
Confidence 12334455554421 12233444555688888999999999999765 444445555555432 3
Q ss_pred CCcEEEEEcCCHHHHHHhCC
Q 047321 239 HESKILITTHDRSVALQLGS 258 (807)
Q Consensus 239 ~gs~IliTTR~~~v~~~~~~ 258 (807)
.|..||++|++.+++..++.
T Consensus 213 ~g~Tii~vTHdl~~~~~~aD 232 (366)
T 3tui_C 213 LGLTILLITHEMDVVKRICD 232 (366)
T ss_dssp SCCEEEEEESCHHHHHHHCS
T ss_pred CCCEEEEEecCHHHHHHhCC
Confidence 47789999999888776543
No 202
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.67 E-value=2.1e-05 Score=73.63 Aligned_cols=88 Identities=13% Similarity=0.241 Sum_probs=58.6
Q ss_pred ccccccccCCCccccchhhhccccCCCCCCcccEEEEccCCCCCCCc-ccccCC----CCccEEeeccCccccccccccc
Q 047321 678 KLKSLEIDGMKELEEWNYRITRKENISIMPRLSSLQIMNCRKLKALP-DYLLQT----IALQKLSIYSCDLLEELPILED 752 (807)
Q Consensus 678 ~L~~L~l~~~~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~lp-~~l~~l----~~L~~L~l~~c~~l~~lP~~~~ 752 (807)
+|+.|++++|. +..... ..+..+++|+.|++++|..++.-- ..+..+ ++|++|+|++|+++++-- +
T Consensus 62 ~L~~LDLs~~~-Itd~GL-----~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~G-l-- 132 (176)
T 3e4g_A 62 KIQAIDATDSC-IMSIGF-----DHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKG-I-- 132 (176)
T ss_dssp CEEEEEEESCC-CCGGGG-----GGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHH-H--
T ss_pred eEeEEeCcCCC-ccHHHH-----HHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHH-H--
Confidence 68888888885 544322 234578888899998887776310 012222 468888888888776521 1
Q ss_pred ccCCCCCCCCeeeeccCCCccc
Q 047321 753 RRTTDIPRLSSLAIWYCPKLKV 774 (807)
Q Consensus 753 ~~~~~l~~L~~L~i~~c~~l~~ 774 (807)
..+..+++|++|++++|+.++.
T Consensus 133 ~~L~~~~~L~~L~L~~c~~Itd 154 (176)
T 3e4g_A 133 IALHHFRNLKYLFLSDLPGVKE 154 (176)
T ss_dssp HHGGGCTTCCEEEEESCTTCCC
T ss_pred HHHhcCCCCCEEECCCCCCCCc
Confidence 2345678888888888887764
No 203
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=97.66 E-value=0.0002 Score=71.65 Aligned_cols=63 Identities=17% Similarity=0.191 Sum_probs=42.1
Q ss_pred cHHHHHHHHHHHHhCCceEEEEeCCCCC-CccChHHHHHhhcCC-CCCcEEEEEcCCHHHHHHhC
Q 047321 195 EFESLMKQIQEYITGKKIFLVLDDVWDG-DYKKWDPFFSCLKNG-HHESKILITTHDRSVALQLG 257 (807)
Q Consensus 195 ~~~~~~~~l~~~l~~k~~LlVlDdv~~~-~~~~~~~l~~~l~~~-~~gs~IliTTR~~~v~~~~~ 257 (807)
..+...-.+.+.+..++-+++||++... |......+...+... ..|..||++|++.+.+..+.
T Consensus 142 gGq~qrv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~g~tvi~vtHd~~~~~~~~ 206 (240)
T 1ji0_A 142 GGEQQMLAIGRALMSRPKLLMMDEPSLGLAPILVSEVFEVIQKINQEGTTILLVEQNALGALKVA 206 (240)
T ss_dssp HHHHHHHHHHHHHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHC
T ss_pred HHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhC
Confidence 3344445577888889999999999765 444444455555432 24667999999986655443
No 204
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=97.66 E-value=0.0002 Score=74.82 Aligned_cols=135 Identities=16% Similarity=0.284 Sum_probs=73.5
Q ss_pred ccccccchHHHHHHHHhCCC---CCCCCCceEEEEEccCCChHHHHHHHHHcCcccccccceEEEEEeCCCCCHHHHHHH
Q 047321 105 GVCGRVDEKNELLSKLLCGS---SEQQKGLDVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSNTFEEISVAKA 181 (807)
Q Consensus 105 ~~vGR~~~~~~l~~~L~~~~---~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~ 181 (807)
.++|.+..++.+...+.... .........+.|+|++|+|||++|+.++.. ....-...+.++++...... ....
T Consensus 18 ~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~ll~G~~GtGKt~la~~la~~--~~~~~~~~~~~~~~~~~~~~-~~~~ 94 (311)
T 4fcw_A 18 RVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAAT--LFDTEEAMIRIDMTEYMEKH-AVSR 94 (311)
T ss_dssp TCCSCHHHHHHHHHHHHHHHHTCSCTTSCSEEEEEESCSSSSHHHHHHHHHHH--HHSCGGGEEEEEGGGCCSTT-HHHH
T ss_pred hcCCHHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCcCHHHHHHHHHHH--HcCCCcceEEeecccccccc-cHHH
Confidence 57899888888887775421 000223468999999999999999999873 21111123445544332211 1111
Q ss_pred HHHHcCCCC--CCCccHHHHHHHHHHHH-hCCceEEEEeCCCCCCccChHHHHHhhcCCC-----------CCcEEEEEc
Q 047321 182 IIEGLGVSA--FGLSEFESLMKQIQEYI-TGKKIFLVLDDVWDGDYKKWDPFFSCLKNGH-----------HESKILITT 247 (807)
Q Consensus 182 i~~~l~~~~--~~~~~~~~~~~~l~~~l-~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~-----------~gs~IliTT 247 (807)
+ ++... .+..... .+...+ ....-+++||++..-.......+...+..+. ..+.||.||
T Consensus 95 l---~g~~~~~~~~~~~~----~~~~~~~~~~~~vl~lDEi~~l~~~~~~~Ll~~le~~~~~~~~~~~~~~~~~iiI~tt 167 (311)
T 4fcw_A 95 L---IGAPPGYVGYEEGG----QLTEAVRRRPYSVILFDAIEKAHPDVFNILLQMLDDGRLTDSHGRTVDFRNTVIIMTS 167 (311)
T ss_dssp H---HCCCTTSTTTTTCC----HHHHHHHHCSSEEEEEETGGGSCHHHHHHHHHHHHHSEEECTTSCEEECTTEEEEEEE
T ss_pred h---cCCCCccccccccc----hHHHHHHhCCCeEEEEeChhhcCHHHHHHHHHHHhcCEEEcCCCCEEECCCcEEEEec
Confidence 1 22111 1111101 122222 2345799999996655555666666665432 234466666
Q ss_pred CC
Q 047321 248 HD 249 (807)
Q Consensus 248 R~ 249 (807)
..
T Consensus 168 n~ 169 (311)
T 4fcw_A 168 NL 169 (311)
T ss_dssp ST
T ss_pred cc
Confidence 55
No 205
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=97.66 E-value=0.0012 Score=71.40 Aligned_cols=187 Identities=14% Similarity=0.090 Sum_probs=99.2
Q ss_pred CccccccchHHHHHHHHhCCCC------CCCCCceEEEEEccCCChHHHHHHHHHcCcccccccceEEEEEeCCCCCHHH
Q 047321 104 GGVCGRVDEKNELLSKLLCGSS------EQQKGLDVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSNTFEEIS 177 (807)
Q Consensus 104 ~~~vGR~~~~~~l~~~L~~~~~------~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~ 177 (807)
.+++|.+..++.|.+.+..... ......+-|.|+|+.|+|||++|+.+++. .... .+.++.+.-...
T Consensus 115 ~~iiG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~aia~~--~~~~---~~~v~~~~l~~~-- 187 (389)
T 3vfd_A 115 DDIAGQDLAKQALQEIVILPSLRPELFTGLRAPARGLLLFGPPGNGKTMLAKAVAAE--SNAT---FFNISAASLTSK-- 187 (389)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGCCCSEEEEESSTTSCHHHHHHHHHHH--TTCE---EEEECSCCC-----
T ss_pred HHhCCHHHHHHHHHHHHHHhccCHHHhcccCCCCceEEEECCCCCCHHHHHHHHHHh--hcCc---EEEeeHHHhhcc--
Confidence 5799999999999888732100 00123468899999999999999999862 2222 223332221110
Q ss_pred HHHHHHHHcCCCCCCCccHHHHHHHHHHHHhCCceEEEEeCCCCC-----------CccChHHHHHhhcC----CCCCcE
Q 047321 178 VAKAIIEGLGVSAFGLSEFESLMKQIQEYITGKKIFLVLDDVWDG-----------DYKKWDPFFSCLKN----GHHESK 242 (807)
Q Consensus 178 ~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~-----------~~~~~~~l~~~l~~----~~~gs~ 242 (807)
. .+ .....+...+...-...+.+|+|||+..- .......+...+.. ......
T Consensus 188 ~------------~g-~~~~~~~~~~~~a~~~~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~v~ 254 (389)
T 3vfd_A 188 Y------------VG-EGEKLVRALFAVARELQPSIIFIDQVDSLLCERREGEHDASRRLKTEFLIEFDGVQSAGDDRVL 254 (389)
T ss_dssp -----------------CHHHHHHHHHHHHHSSSEEEEEETGGGGC--------CTHHHHHHHHHHHHHHHC-----CEE
T ss_pred c------------cc-hHHHHHHHHHHHHHhcCCeEEEEECchhhcccCCCccchHHHHHHHHHHHHhhcccccCCCCEE
Confidence 0 00 01111222222333456789999999431 00011122222221 122344
Q ss_pred EEEEcCCHH-HHHHh--CCCceEeCCCCChhhHHHHHHHHHhccCCccCccchHHHHHHHHHHcCCCHH-HHHHHH
Q 047321 243 ILITTHDRS-VALQL--GSIDIIPVKELGEGECWLLFKQIAFLRRSFEDCEKLEPIGRKIASKCKGLPL-AAKVIG 314 (807)
Q Consensus 243 IliTTR~~~-v~~~~--~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~~~~I~~~c~glPL-ai~~~~ 314 (807)
||.||.... +...+ .-...+.+...+.++..+++...+..... .-..+....|++.+.|..- +|..+.
T Consensus 255 vI~atn~~~~l~~~l~~R~~~~i~i~~p~~~~r~~il~~~~~~~~~----~l~~~~~~~la~~~~g~~~~~l~~L~ 326 (389)
T 3vfd_A 255 VMGATNRPQELDEAVLRRFIKRVYVSLPNEETRLLLLKNLLCKQGS----PLTQKELAQLARMTDGYSGSDLTALA 326 (389)
T ss_dssp EEEEESCGGGCCHHHHTTCCEEEECCCCCHHHHHHHHHHHHTTSCC----CSCHHHHHHHHHHTTTCCHHHHHHHH
T ss_pred EEEecCCchhcCHHHHcCcceEEEcCCcCHHHHHHHHHHHHHhcCC----CCCHHHHHHHHHHcCCCCHHHHHHHH
Confidence 555665422 11111 11246889999999999999887743222 1123456788888888543 555543
No 206
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=97.65 E-value=0.00013 Score=74.43 Aligned_cols=160 Identities=14% Similarity=0.151 Sum_probs=80.5
Q ss_pred CccccccchHHHHHHHHhCCCCCCCCCceEEEEEccCCChHHHHHHHHHcCcccccccceEEEEEeCCCCCHHHHHHHHH
Q 047321 104 GGVCGRVDEKNELLSKLLCGSSEQQKGLDVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSNTFEEISVAKAII 183 (807)
Q Consensus 104 ~~~vGR~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 183 (807)
..++|++..+.++.+.+..... ....|.|+|+.|+|||++|+.+++.... ... ..+.++++.. ....+...+.
T Consensus 6 ~~~ig~~~~~~~~~~~~~~~~~----~~~~vll~G~~GtGKt~la~~i~~~~~~-~~~-~~~~v~~~~~-~~~~~~~~l~ 78 (265)
T 2bjv_A 6 DNLLGEANSFLEVLEQVSHLAP----LDKPVLIIGERGTGKELIASRLHYLSSR-WQG-PFISLNCAAL-NENLLDSELF 78 (265)
T ss_dssp ----CCCHHHHHHHHHHHHHTT----SCSCEEEECCTTSCHHHHHHHHHHTSTT-TTS-CEEEEEGGGS-CHHHHHHHHH
T ss_pred ccceeCCHHHHHHHHHHHHHhC----CCCCEEEECCCCCcHHHHHHHHHHhcCc-cCC-CeEEEecCCC-ChhHHHHHhc
Confidence 3589999999888877654221 2346789999999999999999874221 111 2344554433 2221111111
Q ss_pred HHcCCCCCCCccHHHHHHHHHHHH-hCCceEEEEeCCCCCCccChHHHHHhhcCC-----------CCCcEEEEEcCCH-
Q 047321 184 EGLGVSAFGLSEFESLMKQIQEYI-TGKKIFLVLDDVWDGDYKKWDPFFSCLKNG-----------HHESKILITTHDR- 250 (807)
Q Consensus 184 ~~l~~~~~~~~~~~~~~~~l~~~l-~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~-----------~~gs~IliTTR~~- 250 (807)
+.......... ......+ ....-+|+|||+..-.......+...+..+ ..+.+||.||...
T Consensus 79 ---g~~~~~~~g~~---~~~~~~l~~a~~~~l~lDEi~~l~~~~q~~Ll~~l~~~~~~~~g~~~~~~~~~~iI~atn~~~ 152 (265)
T 2bjv_A 79 ---GHEAGAFTGAQ---KRHPGRFERADGGTLFLDELATAPMMVQEKLLRVIEYGELERVGGSQPLQVNVRLVCATNADL 152 (265)
T ss_dssp ---CCC------------CCCCHHHHTTTSEEEEESGGGSCHHHHHHHHHHHHHCEECCCCC--CEECCCEEEEEESSCH
T ss_pred ---CCccccccccc---ccccchhhhcCCcEEEEechHhcCHHHHHHHHHHHHhCCeecCCCcccccCCeEEEEecCcCH
Confidence 11100000000 0000011 123568999999665544445566655432 1345778777652
Q ss_pred -H----------HHHHhCCCceEeCCCCCh--hhHHHHHH
Q 047321 251 -S----------VALQLGSIDIIPVKELGE--GECWLLFK 277 (807)
Q Consensus 251 -~----------v~~~~~~~~~~~l~~L~~--~~~~~Lf~ 277 (807)
. ....+.. ..+.+++|.+ ++...++.
T Consensus 153 ~~~~~~~~~~~~L~~Rl~~-~~i~lp~L~~R~~di~~l~~ 191 (265)
T 2bjv_A 153 PAMVNEGTFRADLLDALAF-DVVQLPPLRERESDIMLMAE 191 (265)
T ss_dssp HHHHHHTSSCHHHHHHHCS-EEEECCCGGGCHHHHHHHHH
T ss_pred HHHHHcCCccHHHHHhhcC-cEEeCCChhhhhHHHHHHHH
Confidence 1 1122221 3578888876 45554443
No 207
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=97.65 E-value=0.0011 Score=72.72 Aligned_cols=189 Identities=15% Similarity=0.051 Sum_probs=100.9
Q ss_pred CccccccchHHHHHHHHhCC----CC--CCCCCceEEEEEccCCChHHHHHHHHHcCcccccccceEEEEEeCCCCCHHH
Q 047321 104 GGVCGRVDEKNELLSKLLCG----SS--EQQKGLDVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSNTFEEIS 177 (807)
Q Consensus 104 ~~~vGR~~~~~~l~~~L~~~----~~--~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~ 177 (807)
.+++|.++.++.|.+.+..+ .. ......+-|.|+|++|+|||+||+.+++... .. -++.++...
T Consensus 134 ~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~aia~~~~-~~-----~~~~v~~~~---- 203 (444)
T 2zan_A 134 SDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEAN-NS-----TFFSISSSD---- 203 (444)
T ss_dssp GGSCSCHHHHHHHHHHHTHHHHCTTTTSGGGCCCSEEEEECSTTSSHHHHHHHHHHHCC-SS-----EEEEECCC-----
T ss_pred HHhcCHHHHHHHHHHHHHHHhhCHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHcC-CC-----CEEEEeHHH----
Confidence 56899999999988876311 00 0012446889999999999999999997320 11 123332221
Q ss_pred HHHHHHHHcCCCCCCCccHHHHHHHHHHHHhCCceEEEEeCCCCCC-------ccChHHHHH----hhcC---CCCCcEE
Q 047321 178 VAKAIIEGLGVSAFGLSEFESLMKQIQEYITGKKIFLVLDDVWDGD-------YKKWDPFFS----CLKN---GHHESKI 243 (807)
Q Consensus 178 ~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~-------~~~~~~l~~----~l~~---~~~gs~I 243 (807)
+... ..+.. ..... ..+...-..++.+|++|++..-. ......+.. .+.. ...+..|
T Consensus 204 l~~~---~~g~~---~~~~~---~~f~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~~v~v 274 (444)
T 2zan_A 204 LVSK---WLGES---EKLVK---NLFQLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDNDGILV 274 (444)
T ss_dssp -----------C---CCTHH---HHHHHHHHSCSEEEEESCTTTTCCCSSCCCCGGGHHHHHHHHTTTTCSSCCCSSCEE
T ss_pred HHhh---hcchH---HHHHH---HHHHHHHHcCCeEEEEechHhhccCCCCccccHHHHHHHHHHHHHhCcccCCCCEEE
Confidence 0000 01100 11111 12222234678899999996421 111122222 2221 1345566
Q ss_pred EEEcCCHHHH-HH-h-CCCceEeCCCCChhhHHHHHHHHHhccCCccCccchHHHHHHHHHHcCC-CHHHHHHHHH
Q 047321 244 LITTHDRSVA-LQ-L-GSIDIIPVKELGEGECWLLFKQIAFLRRSFEDCEKLEPIGRKIASKCKG-LPLAAKVIGN 315 (807)
Q Consensus 244 liTTR~~~v~-~~-~-~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~~~~I~~~c~g-lPLai~~~~~ 315 (807)
|.||...... .. . .-...+.+...+.++...+|..++..... .. -......|++.+.| .+-.|..+..
T Consensus 275 I~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~-~l---~~~~l~~la~~t~G~sgadl~~l~~ 346 (444)
T 2zan_A 275 LGATNIPWVLDSAIRRRFEKRIYIPLPEAHARAAMFRLHLGSTQN-SL---TEADFQELGRKTDGYSGADISIIVR 346 (444)
T ss_dssp EEEESCGGGSCHHHHTTCCEEEECCCCCHHHHHHHHHHHHTTSCE-EC---CHHHHHHHHHHTTTCCHHHHHHHHH
T ss_pred EecCCCccccCHHHHhhcceEEEeCCcCHHHHHHHHHHHHhcCCC-CC---CHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 6677553211 10 1 11246788888888888888877633211 11 13456788899988 5556655543
No 208
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=97.63 E-value=0.00012 Score=73.62 Aligned_cols=61 Identities=15% Similarity=0.171 Sum_probs=41.7
Q ss_pred ccHHHHHHHHHHHHhCCceEEEEeCCCCC-CccChHHHHHhhcCCCCCcEEEEEcCCHHHHH
Q 047321 194 SEFESLMKQIQEYITGKKIFLVLDDVWDG-DYKKWDPFFSCLKNGHHESKILITTHDRSVAL 254 (807)
Q Consensus 194 ~~~~~~~~~l~~~l~~k~~LlVlDdv~~~-~~~~~~~l~~~l~~~~~gs~IliTTR~~~v~~ 254 (807)
...+...-.+.+.+-.++-+++||++... |......+...+.....|..||++|++...+.
T Consensus 147 SgGq~qRv~iAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~g~tviivtH~~~~~~ 208 (247)
T 2ff7_A 147 SGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKICKGRTVIIIAHRLSTVK 208 (247)
T ss_dssp CHHHHHHHHHHHHHTTCCSEEEECCCCSCCCHHHHHHHHHHHHHHHTTSEEEEECSSGGGGT
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEeCCHHHHH
Confidence 33444455677888889999999999775 44444445555543334778999999987654
No 209
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=97.63 E-value=0.0004 Score=70.23 Aligned_cols=63 Identities=14% Similarity=0.193 Sum_probs=42.7
Q ss_pred HHHHHHHHHHHHhCCceEEEEeCCCCC-CccChHHHHHhhcCC-CCCcEEEEEcCCHHHHHHhCC
Q 047321 196 FESLMKQIQEYITGKKIFLVLDDVWDG-DYKKWDPFFSCLKNG-HHESKILITTHDRSVALQLGS 258 (807)
Q Consensus 196 ~~~~~~~l~~~l~~k~~LlVlDdv~~~-~~~~~~~l~~~l~~~-~~gs~IliTTR~~~v~~~~~~ 258 (807)
.+...-.+.+.+..++-+|+||++... |...-..+...+... ..|..||++|++.+.+..+..
T Consensus 163 GqkQRv~lAraL~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~~~~~~~d 227 (263)
T 2olj_A 163 GQAQRVAIARALAMEPKIMLFDEPTSALDPEMVGEVLSVMKQLANEGMTMVVVTHEMGFAREVGD 227 (263)
T ss_dssp HHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCS
T ss_pred HHHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHHhCC
Confidence 334445577888889999999999765 444444455555432 237789999999877665543
No 210
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=97.62 E-value=0.00011 Score=73.34 Aligned_cols=127 Identities=21% Similarity=0.208 Sum_probs=73.7
Q ss_pred CceEEEEEccCCChHHHHHHHHHcCcccc-c--cc------------ceEEEEEeC----CCCCH---------------
Q 047321 130 GLDVISLVGLGGIGKTTLAQLAYNNDEVK-R--NF------------EKVIWVCVS----NTFEE--------------- 175 (807)
Q Consensus 130 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~-~--~f------------~~~~wv~~~----~~~~~--------------- 175 (807)
. .+++|+|++|+|||||++.+..-.... + .| ..+.++.-. ...++
T Consensus 24 ~-e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~i~~v~q~~~l~~~ltv~enl~~~~~~~~~~~ 102 (240)
T 2onk_A 24 R-DYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLPPERRGIGFVPQDYALFPHLSVYRNIAYGLRNVERVE 102 (240)
T ss_dssp S-SEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCTTTSCCBCCCSSCCCCTTSCHHHHHHTTCTTSCHHH
T ss_pred C-EEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCchhhCcEEEEcCCCccCCCCcHHHHHHHHHHHcCCch
Confidence 5 799999999999999999986421100 0 00 011121100 00111
Q ss_pred -HHHHHHHHHHcCCCCC------CCccHHHHHHHHHHHHhCCceEEEEeCCCCC-CccChHHHHHhhcCC--CCCcEEEE
Q 047321 176 -ISVAKAIIEGLGVSAF------GLSEFESLMKQIQEYITGKKIFLVLDDVWDG-DYKKWDPFFSCLKNG--HHESKILI 245 (807)
Q Consensus 176 -~~~~~~i~~~l~~~~~------~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~-~~~~~~~l~~~l~~~--~~gs~Ili 245 (807)
.+...++++.++.... .....+...-.+.+.+..++-+++||++... |...-..+...+... ..|..||+
T Consensus 103 ~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~~g~tvi~ 182 (240)
T 2onk_A 103 RDRRVREMAEKLGIAHLLDRKPARLSGGERQRVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILH 182 (240)
T ss_dssp HHHHHHHHHHTTTCTTTTTCCGGGSCHHHHHHHHHHHHHTTCCSSBEEESTTSSCCHHHHHHHHHHHHHHHHHHTCCEEE
T ss_pred HHHHHHHHHHHcCCHHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEE
Confidence 1223445666654321 1233444455678888899999999999765 444444455555432 12567999
Q ss_pred EcCCHHHHHHhC
Q 047321 246 TTHDRSVALQLG 257 (807)
Q Consensus 246 TTR~~~v~~~~~ 257 (807)
+|++.+.+..+.
T Consensus 183 vtHd~~~~~~~~ 194 (240)
T 2onk_A 183 VTHDLIEAAMLA 194 (240)
T ss_dssp EESCHHHHHHHC
T ss_pred EeCCHHHHHHhC
Confidence 999987665544
No 211
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=97.61 E-value=0.0006 Score=71.05 Aligned_cols=153 Identities=14% Similarity=0.144 Sum_probs=83.7
Q ss_pred CccccccchHHHHHHHHhCC--CCC------CCCCceEEEEEccCCChHHHHHHHHHcCcccccccceEEEEEeCCCCC-
Q 047321 104 GGVCGRVDEKNELLSKLLCG--SSE------QQKGLDVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSNTFE- 174 (807)
Q Consensus 104 ~~~vGR~~~~~~l~~~L~~~--~~~------~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~- 174 (807)
..++|+++.++.+...+... ... .......+.|+|++|+|||++|+.+++. .... .+.++.+...+
T Consensus 15 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~--l~~~---~~~i~~~~~~~~ 89 (310)
T 1ofh_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKL--ANAP---FIKVEATKFTEV 89 (310)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHTTSSCHHHHHHCCCCCEEEECCTTSSHHHHHHHHHHH--HTCC---EEEEEGGGGSSC
T ss_pred hhcCChHHHHHHHHHHHHHHHhhhhhcccccccCCCceEEEECCCCCCHHHHHHHHHHH--hCCC---EEEEcchhcccC
Confidence 46899999999988877531 000 0013456889999999999999999873 2221 23344332211
Q ss_pred ------HHHHHHHHHHHcCCCCCCCccHHHHHHHHHHHHhCCceEEEEeCCCCCCccC------------hHHHHHhhcC
Q 047321 175 ------EISVAKAIIEGLGVSAFGLSEFESLMKQIQEYITGKKIFLVLDDVWDGDYKK------------WDPFFSCLKN 236 (807)
Q Consensus 175 ------~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~------------~~~l~~~l~~ 236 (807)
.......+.....+ .+.. .+.+.+|++|++..-.... ...+...+..
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~-------------~~~~--~~~~~vl~iDEi~~l~~~~~~~~~~~~~~~~~~~Ll~~le~ 154 (310)
T 1ofh_A 90 GYVGKEVDSIIRDLTDSAGG-------------AIDA--VEQNGIVFIDEIDKICKKGEYSGADVSREGVQRDLLPLVEG 154 (310)
T ss_dssp CSGGGSTTHHHHHHHHTTTT-------------CHHH--HHHHCEEEEECGGGGSCCSSCCSSHHHHHHHHHHHHHHHHC
T ss_pred CccCccHHHHHHHHHHHhhH-------------HHhh--ccCCCEEEEEChhhcCccccccccchhHHHHHHHHHHHhcC
Confidence 11112222211100 0111 1236799999996543222 3445555543
Q ss_pred C----------CCCcEEEEEc----CC-----HHHHHHhCCCceEeCCCCChhhHHHHHHH
Q 047321 237 G----------HHESKILITT----HD-----RSVALQLGSIDIIPVKELGEGECWLLFKQ 278 (807)
Q Consensus 237 ~----------~~gs~IliTT----R~-----~~v~~~~~~~~~~~l~~L~~~~~~~Lf~~ 278 (807)
. ..+..+|.|+ .. +.+...+. ..+.+++++.++..+++.+
T Consensus 155 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~l~~R~~--~~i~~~~~~~~~~~~il~~ 213 (310)
T 1ofh_A 155 STVSTKHGMVKTDHILFIASGAFQVARPSDLIPELQGRLP--IRVELTALSAADFERILTE 213 (310)
T ss_dssp CEEEETTEEEECTTCEEEEEECCSSSCGGGSCHHHHHTCC--EEEECCCCCHHHHHHHHHS
T ss_pred CeEecccccccCCcEEEEEcCCcccCCcccCCHHHHhhCC--ceEEcCCcCHHHHHHHHHh
Confidence 2 1244555553 12 22222222 4689999999998888874
No 212
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=97.61 E-value=0.00034 Score=69.61 Aligned_cols=59 Identities=19% Similarity=0.157 Sum_probs=41.9
Q ss_pred HHHHHHHHHHHHhCCceEEEEeCCCCC-CccChHHHHHhhcCC--CCCcEEEEEcCCHHHHH
Q 047321 196 FESLMKQIQEYITGKKIFLVLDDVWDG-DYKKWDPFFSCLKNG--HHESKILITTHDRSVAL 254 (807)
Q Consensus 196 ~~~~~~~l~~~l~~k~~LlVlDdv~~~-~~~~~~~l~~~l~~~--~~gs~IliTTR~~~v~~ 254 (807)
.+...-.+.+.+..++-+|+||++... |...-..+...+... ..|..||++|++.+++.
T Consensus 149 Gq~QRv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~ 210 (235)
T 3tif_A 149 GQQQRVAIARALANNPPIILADQPTWALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDINVAR 210 (235)
T ss_dssp HHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEECSCHHHHT
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEcCCHHHHH
Confidence 344455678888889999999999765 444445555555443 23678999999998764
No 213
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=97.60 E-value=0.0006 Score=73.86 Aligned_cols=57 Identities=14% Similarity=0.190 Sum_probs=34.3
Q ss_pred cCcccccccccCCCccccchhhhccccCCCCCCcccEEEEccCCCCCCCcc-cccCCCCccEEeeccC
Q 047321 675 AFPKLKSLEIDGMKELEEWNYRITRKENISIMPRLSSLQIMNCRKLKALPD-YLLQTIALQKLSIYSC 741 (807)
Q Consensus 675 ~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~lp~-~l~~l~~L~~L~l~~c 741 (807)
++++|+.+.|.+ +++.+.. ..+..+++|+.+.|.+ +++.++. .+.++ +|+.|.+.++
T Consensus 298 ~c~~L~~l~l~~--~i~~I~~-----~aF~~c~~L~~l~lp~--~l~~I~~~aF~~~-~L~~l~l~~n 355 (401)
T 4fdw_A 298 GCPKLARFEIPE--SIRILGQ-----GLLGGNRKVTQLTIPA--NVTQINFSAFNNT-GIKEVKVEGT 355 (401)
T ss_dssp TCTTCCEECCCT--TCCEECT-----TTTTTCCSCCEEEECT--TCCEECTTSSSSS-CCCEEEECCS
T ss_pred CCccCCeEEeCC--ceEEEhh-----hhhcCCCCccEEEECc--cccEEcHHhCCCC-CCCEEEEcCC
Confidence 566777777753 3555443 3345567777777743 3555543 45566 7777777764
No 214
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=97.60 E-value=0.00073 Score=68.61 Aligned_cols=60 Identities=15% Similarity=0.099 Sum_probs=43.2
Q ss_pred HHHHHHHHHHHHhCCceEEEEeCCCCC-CccChHHHHHhhcCC-CCCcEEEEEcCCHHHHHH
Q 047321 196 FESLMKQIQEYITGKKIFLVLDDVWDG-DYKKWDPFFSCLKNG-HHESKILITTHDRSVALQ 255 (807)
Q Consensus 196 ~~~~~~~l~~~l~~k~~LlVlDdv~~~-~~~~~~~l~~~l~~~-~~gs~IliTTR~~~v~~~ 255 (807)
.+...-.+.+.+..++-+|+||++... |......+...+... ..|..||++|++.+.+..
T Consensus 168 Gq~QRv~iAraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~g~tviivtHd~~~~~~ 229 (267)
T 2zu0_C 168 GEKKRNDILQMAVLEPELCILDESDSGLDIDALKVVADGVNSLRDGKRSFIIVTHYQRILDY 229 (267)
T ss_dssp HHHHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHTTCCSSCEEEEECSSGGGGGT
T ss_pred HHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeeCHHHHHh
Confidence 344455577888888999999999775 555555666666543 347789999999876654
No 215
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=97.59 E-value=0.0003 Score=70.80 Aligned_cols=129 Identities=19% Similarity=0.263 Sum_probs=75.3
Q ss_pred CceEEEEEccCCChHHHHHHHHHcCcccc-cc---cceEEEEEeCC----CCCH----------------------HHHH
Q 047321 130 GLDVISLVGLGGIGKTTLAQLAYNNDEVK-RN---FEKVIWVCVSN----TFEE----------------------ISVA 179 (807)
Q Consensus 130 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~-~~---f~~~~wv~~~~----~~~~----------------------~~~~ 179 (807)
.-.+++|+|++|+|||||++.++.-.... +. ...+.|+.-.. ..++ .+..
T Consensus 30 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~ 109 (253)
T 2nq2_C 30 KGDILAVLGQNGCGKSTLLDLLLGIHRPIQGKIEVYQSIGFVPQFFSSPFAYSVLDIVLMGRSTHINTFAKPKSHDYQVA 109 (253)
T ss_dssp TTCEEEEECCSSSSHHHHHHHHTTSSCCSEEEEEECSCEEEECSCCCCSSCCBHHHHHHGGGGGGSCTTCCCCHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEEeccEEEEcCCCccCCCCCHHHHHHHhhhhhcccccCCCHHHHHHH
Confidence 34689999999999999999997632110 00 01122332110 0011 1223
Q ss_pred HHHHHHcCCCCC------CCccHHHHHHHHHHHHhCCceEEEEeCCCCC-CccChHHHHHhhcCC--CCCcEEEEEcCCH
Q 047321 180 KAIIEGLGVSAF------GLSEFESLMKQIQEYITGKKIFLVLDDVWDG-DYKKWDPFFSCLKNG--HHESKILITTHDR 250 (807)
Q Consensus 180 ~~i~~~l~~~~~------~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~-~~~~~~~l~~~l~~~--~~gs~IliTTR~~ 250 (807)
.++++.++.... .....+...-.+.+.+..++-+++||++... |......+...+... ..|..||++|++.
T Consensus 110 ~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~ 189 (253)
T 2nq2_C 110 MQALDYLNLTHLAKREFTSLSGGQRQLILIARAIASECKLILLDEPTSALDLANQDIVLSLLIDLAQSQNMTVVFTTHQP 189 (253)
T ss_dssp HHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHHTTCSEEEESSSSTTSCHHHHHHHHHHHHHHHHTSCCEEEEEESCH
T ss_pred HHHHHHcCChHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCH
Confidence 445555544311 1223344455577888889999999999765 544445555555432 2267899999998
Q ss_pred HHHHHhCC
Q 047321 251 SVALQLGS 258 (807)
Q Consensus 251 ~v~~~~~~ 258 (807)
+.+..+..
T Consensus 190 ~~~~~~~d 197 (253)
T 2nq2_C 190 NQVVAIAN 197 (253)
T ss_dssp HHHHHHCS
T ss_pred HHHHHhCC
Confidence 77655443
No 216
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=97.58 E-value=0.00029 Score=71.40 Aligned_cols=62 Identities=13% Similarity=0.160 Sum_probs=41.5
Q ss_pred HHHHHHHHHHHhCCceEEEEeCCCCC-CccChHHHHHhhcCC-CCCcEEEEEcCCHHHHHHhCC
Q 047321 197 ESLMKQIQEYITGKKIFLVLDDVWDG-DYKKWDPFFSCLKNG-HHESKILITTHDRSVALQLGS 258 (807)
Q Consensus 197 ~~~~~~l~~~l~~k~~LlVlDdv~~~-~~~~~~~l~~~l~~~-~~gs~IliTTR~~~v~~~~~~ 258 (807)
+...-.+.+.+..++-+|+||++... |......+...+... ..|..||++|++.+.+..++.
T Consensus 158 q~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~~~~~~~d 221 (262)
T 1b0u_A 158 QQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSS 221 (262)
T ss_dssp HHHHHHHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEECSCHHHHHHHCS
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCC
Confidence 33344577788889999999999765 444444455554332 236679999999877765543
No 217
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=97.58 E-value=0.0006 Score=75.51 Aligned_cols=185 Identities=13% Similarity=0.063 Sum_probs=102.4
Q ss_pred CccccccchHHHHHHHHhCCCCC-------CCCCceEEEEEccCCChHHHHHHHHHcCcccccccceEEEEEeCCCCCHH
Q 047321 104 GGVCGRVDEKNELLSKLLCGSSE-------QQKGLDVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSNTFEEI 176 (807)
Q Consensus 104 ~~~vGR~~~~~~l~~~L~~~~~~-------~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~ 176 (807)
.+++|.+..+++|.+++...... ......-|.|+|++|+|||++|+.+++. ....| +.++. .
T Consensus 204 ~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~lAraia~~--~~~~f---v~vn~------~ 272 (489)
T 3hu3_A 204 DDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANE--TGAFF---FLING------P 272 (489)
T ss_dssp GGCCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCEEEEECSTTSSHHHHHHHHHHH--CSSEE---EEEEH------H
T ss_pred HHcCCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECcCCCCHHHHHHHHHHH--hCCCE---EEEEc------h
Confidence 45899999999998877532000 0123456899999999999999999873 22222 23331 1
Q ss_pred HHHHHHHHHcCCCCCCCccHHHHHHHHHHHHhCCceEEEEeCCCCCC-----------ccChHHHHHhhcCC--CCCcEE
Q 047321 177 SVAKAIIEGLGVSAFGLSEFESLMKQIQEYITGKKIFLVLDDVWDGD-----------YKKWDPFFSCLKNG--HHESKI 243 (807)
Q Consensus 177 ~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~-----------~~~~~~l~~~l~~~--~~gs~I 243 (807)
.+...+ . ..........+.....+++.+|+||++..-. ......+...+... ..+.+|
T Consensus 273 ----~l~~~~----~-g~~~~~~~~~f~~A~~~~p~iLfLDEId~l~~~~~~~~~~~~~~~~~~LL~~ld~~~~~~~v~v 343 (489)
T 3hu3_A 273 ----EIMSKL----A-GESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIV 343 (489)
T ss_dssp ----HHHTSC----T-THHHHHHHHHHHHHHHTCSEEEEEESHHHHCBCTTSCCCHHHHHHHHHHHHHHHHSCTTSCEEE
T ss_pred ----Hhhhhh----c-chhHHHHHHHHHHHHhcCCcEEEecchhhhccccccccchHHHHHHHHHHHHhhccccCCceEE
Confidence 111111 0 1112223344445556788999999982110 01122344444322 234456
Q ss_pred EEEcCCHHH-HHHh----CCCceEeCCCCChhhHHHHHHHHHhccCCccCccchHHHHHHHHHHcCCC-HHHHHHH
Q 047321 244 LITTHDRSV-ALQL----GSIDIIPVKELGEGECWLLFKQIAFLRRSFEDCEKLEPIGRKIASKCKGL-PLAAKVI 313 (807)
Q Consensus 244 liTTR~~~v-~~~~----~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~~~~I~~~c~gl-PLai~~~ 313 (807)
|.||..... ...+ .-...+.+...+.++-.+++..++..... .....+ ..+++.+.|. +-.+..+
T Consensus 344 IaaTn~~~~Ld~al~r~gRf~~~i~i~~P~~~eR~~IL~~~~~~~~l-~~~~~l----~~la~~t~g~s~~dL~~L 414 (489)
T 3hu3_A 344 MAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKL-ADDVDL----EQVANETHGHVGADLAAL 414 (489)
T ss_dssp EEEESCGGGBCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHTTTSCB-CTTCCH----HHHHHTCTTCCHHHHHHH
T ss_pred EEecCCccccCHHHhCCCcCceEEEeCCCCHHHHHHHHHHHHhcCCC-cchhhH----HHHHHHccCCcHHHHHHH
Confidence 666665421 1111 11346899999999999999887632221 122223 5667777774 5555544
No 218
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=97.58 E-value=0.00051 Score=72.51 Aligned_cols=177 Identities=20% Similarity=0.201 Sum_probs=94.8
Q ss_pred CccccccchHHHHHHHHhCCCCCCCCCceEEEEEccCCChHHHHHHHHHcCcccccccceEEEEEeCCCCCHHHHHHHHH
Q 047321 104 GGVCGRVDEKNELLSKLLCGSSEQQKGLDVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSNTFEEISVAKAII 183 (807)
Q Consensus 104 ~~~vGR~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 183 (807)
..++|.+..++.+...+...... ......+.|+|++|+||||||+.+++. ....|. ... .....
T Consensus 25 ~~~~g~~~~~~~l~~~i~~~~~~-~~~~~~~ll~Gp~G~GKTTLa~~ia~~--l~~~~~---~~s-g~~~~--------- 88 (334)
T 1in4_A 25 DEFIGQENVKKKLSLALEAAKMR-GEVLDHVLLAGPPGLGKTTLAHIIASE--LQTNIH---VTS-GPVLV--------- 88 (334)
T ss_dssp GGCCSCHHHHHHHHHHHHHHHHH-TCCCCCEEEESSTTSSHHHHHHHHHHH--HTCCEE---EEE-TTTCC---------
T ss_pred HHccCcHHHHHHHHHHHHHHHhc-CCCCCeEEEECCCCCcHHHHHHHHHHH--hCCCEE---EEe-chHhc---------
Confidence 45788887777776665432000 123467999999999999999999873 222211 111 11110
Q ss_pred HHcCCCCCCCccHHHHHHHHHHHHhCCceEEEEeCCCCCCccChHHHHHhhcCCC------------------CCcEEE-
Q 047321 184 EGLGVSAFGLSEFESLMKQIQEYITGKKIFLVLDDVWDGDYKKWDPFFSCLKNGH------------------HESKIL- 244 (807)
Q Consensus 184 ~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~------------------~gs~Il- 244 (807)
...++.. +... ..++.++++|++..-.....+.+...+.... +...++
T Consensus 89 -----------~~~~l~~-~~~~-~~~~~v~~iDE~~~l~~~~~e~L~~~~~~~~~~i~~~~~~~~~~i~~~l~~~~li~ 155 (334)
T 1in4_A 89 -----------KQGDMAA-ILTS-LERGDVLFIDEIHRLNKAVEELLYSAIEDFQIDIMIGKGPSAKSIRIDIQPFTLVG 155 (334)
T ss_dssp -----------SHHHHHH-HHHH-CCTTCEEEEETGGGCCHHHHHHHHHHHHTSCCCC---------------CCCEEEE
T ss_pred -----------CHHHHHH-HHHH-ccCCCEEEEcchhhcCHHHHHHHHHHHHhcccceeeccCcccccccccCCCeEEEE
Confidence 0111111 1111 1245577888875433223333433322211 011222
Q ss_pred EEcCCHHHHHHhCC--CceEeCCCCChhhHHHHHHHHHhccCCccCccchHHHHHHHHHHcCCCHHHHHHH
Q 047321 245 ITTHDRSVALQLGS--IDIIPVKELGEGECWLLFKQIAFLRRSFEDCEKLEPIGRKIASKCKGLPLAAKVI 313 (807)
Q Consensus 245 iTTR~~~v~~~~~~--~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~~~~I~~~c~glPLai~~~ 313 (807)
.|++...+...+.. .-...+++.+.++-.+++.+.+-..+. ....+.+..|++.++|.|-.+..+
T Consensus 156 at~~~~~Ls~~l~sR~~l~~~Ld~~~~~~l~~iL~~~~~~~~~----~~~~~~~~~ia~~~~G~~R~a~~l 222 (334)
T 1in4_A 156 ATTRSGLLSSPLRSRFGIILELDFYTVKELKEIIKRAASLMDV----EIEDAAAEMIAKRSRGTPRIAIRL 222 (334)
T ss_dssp EESCGGGSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHTTC----CBCHHHHHHHHHTSTTCHHHHHHH
T ss_pred ecCCcccCCHHHHHhcCceeeCCCCCHHHHHHHHHHHHHHcCC----CcCHHHHHHHHHhcCCChHHHHHH
Confidence 34443222111111 235789999999999999987643221 122466899999999999765443
No 219
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=97.58 E-value=0.00023 Score=74.01 Aligned_cols=160 Identities=15% Similarity=0.155 Sum_probs=84.4
Q ss_pred CccccccchHHHHHHHHhCCCCCCCCCceEEEEEccCCChHHHHHHHHHcCcc-cccccceEEEEEeCCCCCHHHHHHHH
Q 047321 104 GGVCGRVDEKNELLSKLLCGSSEQQKGLDVISLVGLGGIGKTTLAQLAYNNDE-VKRNFEKVIWVCVSNTFEEISVAKAI 182 (807)
Q Consensus 104 ~~~vGR~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~-~~~~f~~~~wv~~~~~~~~~~~~~~i 182 (807)
..++|+...+.++.+.+..... ....|.|+|++|+|||++|+.+++... ....| +.++++... ..++...
T Consensus 2 ~~iig~s~~~~~~~~~~~~~a~----~~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~~~---v~v~~~~~~--~~l~~~~ 72 (304)
T 1ojl_A 2 SHMIGSSPAMQHLLNEIAMVAP----SDATVLIHGDSGTGKELVARALHACSARSDRPL---VTLNCAALN--ESLLESE 72 (304)
T ss_dssp -CCCCCSHHHHHHHHHHHHHCS----TTSCEEEESCTTSCHHHHHHHHHHHSSCSSSCC---CEEECSSCC--HHHHHHH
T ss_pred CCcEECCHHHHHHHHHHHHHhC----CCCcEEEECCCCchHHHHHHHHHHhCcccCCCe---EEEeCCCCC--hHHHHHH
Confidence 4589999999998888764321 234577999999999999999987321 11222 234443322 2222221
Q ss_pred HHHcCCCCCCCccHH-HHHHHHHHHHhCCceEEEEeCCCCCCccChHHHHHhhcCCC-----------CCcEEEEEcCCH
Q 047321 183 IEGLGVSAFGLSEFE-SLMKQIQEYITGKKIFLVLDDVWDGDYKKWDPFFSCLKNGH-----------HESKILITTHDR 250 (807)
Q Consensus 183 ~~~l~~~~~~~~~~~-~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~-----------~gs~IliTTR~~ 250 (807)
+ ++.......... .....+.. ...-.|+||++..-.......+...+.... ...+||.||...
T Consensus 73 l--fg~~~g~~tg~~~~~~g~~~~---a~~g~L~LDEi~~l~~~~q~~Ll~~l~~~~~~~~g~~~~~~~~~riI~atn~~ 147 (304)
T 1ojl_A 73 L--FGHEKGAFTGADKRREGRFVE---ADGGTLFLDEIGDISPLMQVRLLRAIQEREVQRVGSNQTISVDVRLIAATHRD 147 (304)
T ss_dssp H--TCCCSSCCC---CCCCCHHHH---HTTSEEEEESCTTCCHHHHHHHHHHHHSSBCCBTTBCCCCBCCCEEEEEESSC
T ss_pred h--cCccccccCchhhhhcCHHHh---cCCCEEEEeccccCCHHHHHHHHHHHhcCEeeecCCcccccCCeEEEEecCcc
Confidence 1 222110000000 00001111 123578999997665555555666665432 245777777653
Q ss_pred --H-H---------HHHhCCCceEeCCCCC--hhhHHHHHHH
Q 047321 251 --S-V---------ALQLGSIDIIPVKELG--EGECWLLFKQ 278 (807)
Q Consensus 251 --~-v---------~~~~~~~~~~~l~~L~--~~~~~~Lf~~ 278 (807)
. + ...+. ...+.+++|. .+|...++..
T Consensus 148 l~~~v~~g~fr~~L~~Rl~-~~~i~lPpL~eR~edi~~l~~~ 188 (304)
T 1ojl_A 148 LAEEVSAGRFRQDLYYRLN-VVAIEMPSLRQRREDIPLLADH 188 (304)
T ss_dssp HHHHHHHTSSCHHHHHHHS-SEEEECCCSGGGGGGHHHHHHH
T ss_pred HHHHHHhCCcHHHHHhhcC-eeEEeccCHHHhHhhHHHHHHH
Confidence 1 1 11122 2357789998 4665555543
No 220
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=97.57 E-value=0.00033 Score=70.84 Aligned_cols=121 Identities=14% Similarity=0.141 Sum_probs=73.0
Q ss_pred ceEEEEEccCCChHHHHHHHHHcCcccc-c--ccc-----------eEE-EEEeCCC----CCHH--------------H
Q 047321 131 LDVISLVGLGGIGKTTLAQLAYNNDEVK-R--NFE-----------KVI-WVCVSNT----FEEI--------------S 177 (807)
Q Consensus 131 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~-~--~f~-----------~~~-wv~~~~~----~~~~--------------~ 177 (807)
-.+++|+|++|+|||||++.++.-. .. + .++ .+. ++ .+. .++. +
T Consensus 30 Ge~~~i~G~NGsGKSTLlk~l~Gl~-p~~G~I~~~g~~~~~~~~~~~i~~~v--~Q~~~l~~tv~enl~~~~~~~~~~~~ 106 (263)
T 2pjz_A 30 GEKVIILGPNGSGKTTLLRAISGLL-PYSGNIFINGMEVRKIRNYIRYSTNL--PEAYEIGVTVNDIVYLYEELKGLDRD 106 (263)
T ss_dssp SSEEEEECCTTSSHHHHHHHHTTSS-CCEEEEEETTEEGGGCSCCTTEEECC--GGGSCTTSBHHHHHHHHHHHTCCCHH
T ss_pred CEEEEEECCCCCCHHHHHHHHhCCC-CCCcEEEECCEECcchHHhhheEEEe--CCCCccCCcHHHHHHHhhhhcchHHH
Confidence 4589999999999999999997531 10 0 010 122 22 121 1221 1
Q ss_pred HHHHHHHHcCCC-CC------CCccHHHHHHHHHHHHhCCceEEEEeCCCCC-CccChHHHHHhhcCCCCCcEEEEEcCC
Q 047321 178 VAKAIIEGLGVS-AF------GLSEFESLMKQIQEYITGKKIFLVLDDVWDG-DYKKWDPFFSCLKNGHHESKILITTHD 249 (807)
Q Consensus 178 ~~~~i~~~l~~~-~~------~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~-~~~~~~~l~~~l~~~~~gs~IliTTR~ 249 (807)
...++++.++.. .. .....+...-.+.+.+..++-+++||++... |......+...+..... .||++|++
T Consensus 107 ~~~~~l~~~gl~~~~~~~~~~~LSgGqkqRv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~L~~~~~--tviivtHd 184 (263)
T 2pjz_A 107 LFLEMLKALKLGEEILRRKLYKLSAGQSVLVRTSLALASQPEIVGLDEPFENVDAARRHVISRYIKEYGK--EGILVTHE 184 (263)
T ss_dssp HHHHHHHHTTCCGGGGGSBGGGSCHHHHHHHHHHHHHHTCCSEEEEECTTTTCCHHHHHHHHHHHHHSCS--EEEEEESC
T ss_pred HHHHHHHHcCCChhHhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCccccCHHHHHHHHHHHHHhcC--cEEEEEcC
Confidence 233455555544 21 1233344455677888889999999999765 55555556666655433 79999999
Q ss_pred HHHHHHh
Q 047321 250 RSVALQL 256 (807)
Q Consensus 250 ~~v~~~~ 256 (807)
.+.+..+
T Consensus 185 ~~~~~~~ 191 (263)
T 2pjz_A 185 LDMLNLY 191 (263)
T ss_dssp GGGGGGC
T ss_pred HHHHHHh
Confidence 7665443
No 221
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.56 E-value=0.0078 Score=63.93 Aligned_cols=178 Identities=16% Similarity=0.061 Sum_probs=96.5
Q ss_pred ccccccchHHHHHHHHhCCCCC-------CCCCceEEEEEccCCChHHHHHHHHHcCcccccccceEEEEEeCCCCCHHH
Q 047321 105 GVCGRVDEKNELLSKLLCGSSE-------QQKGLDVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSNTFEEIS 177 (807)
Q Consensus 105 ~~vGR~~~~~~l~~~L~~~~~~-------~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~ 177 (807)
++.|-++.+++|.+.+..+-.. +-...+-|.++|++|+|||.||+++++ .....| +.+..+.-.
T Consensus 149 dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTllAkAiA~--e~~~~f---~~v~~s~l~---- 219 (405)
T 4b4t_J 149 MVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAH--HTDCKF---IRVSGAELV---- 219 (405)
T ss_dssp GSCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCCEEEESCSSSSHHHHHHHHHH--HHTCEE---EEEEGGGGS----
T ss_pred HhCCHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCceEEeCCCCCCHHHHHHHHHH--hhCCCc---eEEEhHHhh----
Confidence 5788888888887765321000 023456788999999999999999998 333333 233322211
Q ss_pred HHHHHHHHcCCCCCCCccHHHHHHHHHHHHhCCceEEEEeCCCCCC--------cc--C----hHHHHHhhcC--CCCCc
Q 047321 178 VAKAIIEGLGVSAFGLSEFESLMKQIQEYITGKKIFLVLDDVWDGD--------YK--K----WDPFFSCLKN--GHHES 241 (807)
Q Consensus 178 ~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~--------~~--~----~~~l~~~l~~--~~~gs 241 (807)
.... ......+...+...-...+.+|++|+++.-- .. . ...++..+.. ...+.
T Consensus 220 ----------sk~v-Gese~~vr~lF~~Ar~~aP~IIFiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~V 288 (405)
T 4b4t_J 220 ----------QKYI-GEGSRMVRELFVMAREHAPSIIFMDEIDSIGSTRVEGSGGGDSEVQRTMLELLNQLDGFETSKNI 288 (405)
T ss_dssp ----------CSST-THHHHHHHHHHHHHHHTCSEEEEEESSSCCTTSCSCSSSGGGGHHHHHHHHHHHHHHTTTCCCCE
T ss_pred ----------cccc-chHHHHHHHHHHHHHHhCCceEeeecchhhccCCCCCCCCCcHHHHHHHHHHHHhhhccCCCCCe
Confidence 0101 1111222222333335679999999985420 00 1 1122222322 23344
Q ss_pred EEEEEcCCHHH---HHH--hCCCceEeCCCCChhhHHHHHHHHHhccCCccCccchHHHHHHHHHHcCCCH
Q 047321 242 KILITTHDRSV---ALQ--LGSIDIIPVKELGEGECWLLFKQIAFLRRSFEDCEKLEPIGRKIASKCKGLP 307 (807)
Q Consensus 242 ~IliTTR~~~v---~~~--~~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~~~~I~~~c~glP 307 (807)
.||.||...+. |-. -.-...+.++..+.++-.++|+.+.-.... ....++ ..|++.+.|.-
T Consensus 289 ~vIaATNrpd~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~l-~~dvdl----~~lA~~t~G~S 354 (405)
T 4b4t_J 289 KIIMATNRLDILDPALLRPGRIDRKIEFPPPSVAARAEILRIHSRKMNL-TRGINL----RKVAEKMNGCS 354 (405)
T ss_dssp EEEEEESCSSSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTSBC-CSSCCH----HHHHHHCCSCC
T ss_pred EEEeccCChhhCCHhHcCCCcCceEEEcCCcCHHHHHHHHHHHhcCCCC-CccCCH----HHHHHHCCCCC
Confidence 56666654332 111 122458899998999889999776532221 122233 66788887753
No 222
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=97.56 E-value=0.00015 Score=73.92 Aligned_cols=63 Identities=19% Similarity=0.106 Sum_probs=42.8
Q ss_pred cHHHHHHHHHHHHhCCceEEEEeCCCCC-CccChHHHHHhhcCC--CCCcEEEEEcCCHHHHHHhC
Q 047321 195 EFESLMKQIQEYITGKKIFLVLDDVWDG-DYKKWDPFFSCLKNG--HHESKILITTHDRSVALQLG 257 (807)
Q Consensus 195 ~~~~~~~~l~~~l~~k~~LlVlDdv~~~-~~~~~~~l~~~l~~~--~~gs~IliTTR~~~v~~~~~ 257 (807)
..+...-.+.+.+..++-+|+||++... |...-..+...+... ..|..||++|++.+.+..++
T Consensus 146 gGqkQRv~iAraL~~~P~lLlLDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHdl~~~~~~~ 211 (275)
T 3gfo_A 146 FGQKKRVAIAGVLVMEPKVLILDEPTAGLDPMGVSEIMKLLVEMQKELGITIIIATHDIDIVPLYC 211 (275)
T ss_dssp HHHHHHHHHHHHHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHHCCEEEEEESCCSSGGGGC
T ss_pred HHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHhhCCCEEEEEecCHHHHHHhC
Confidence 3444455678888999999999999765 444444555555432 23778999999977665443
No 223
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=97.56 E-value=0.00044 Score=68.27 Aligned_cols=124 Identities=21% Similarity=0.251 Sum_probs=72.0
Q ss_pred CceEEEEEccCCChHHHHHHHHHcCcc------------ccc-------cc--ceEEEEEeCC----CCCHHH-------
Q 047321 130 GLDVISLVGLGGIGKTTLAQLAYNNDE------------VKR-------NF--EKVIWVCVSN----TFEEIS------- 177 (807)
Q Consensus 130 ~~~vi~I~G~gGiGKTtLa~~v~~~~~------------~~~-------~f--~~~~wv~~~~----~~~~~~------- 177 (807)
.-.+++|+|++|+|||||++.++.-.. +.. .+ ..+.++.-.. ..++.+
T Consensus 29 ~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~e~l~~~~~ 108 (224)
T 2pcj_A 29 KGEFVSIIGASGSGKSTLLYILGLLDAPTEGKVFLEGKEVDYTNEKELSLLRNRKLGFVFQFHYLIPELTALENVIVPML 108 (224)
T ss_dssp TTCEEEEEECTTSCHHHHHHHHTTSSCCSEEEEEETTEECCSSCHHHHHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCCCCHHHHHHHHhCcEEEEecCcccCCCCCHHHHHHhHHH
Confidence 346899999999999999999864211 100 00 1133332111 112211
Q ss_pred -----------HHHHHHHHcCCCCC------CCccHHHHHHHHHHHHhCCceEEEEeCCCCC-CccChHHHHHhhcCC-C
Q 047321 178 -----------VAKAIIEGLGVSAF------GLSEFESLMKQIQEYITGKKIFLVLDDVWDG-DYKKWDPFFSCLKNG-H 238 (807)
Q Consensus 178 -----------~~~~i~~~l~~~~~------~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~-~~~~~~~l~~~l~~~-~ 238 (807)
...++++.++.... .....+...-.+.+.+..++-+++||++... |...-..+...+... .
T Consensus 109 ~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~ 188 (224)
T 2pcj_A 109 KMGKPKKEAKERGEYLLSELGLGDKLSRKPYELSGGEQQRVAIARALANEPILLFADEPTGNLDSANTKRVMDIFLKINE 188 (224)
T ss_dssp HTTCCHHHHHHHHHHHHHHTTCTTCTTCCGGGSCHHHHHHHHHHHHTTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHH
T ss_pred HcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH
Confidence 12334555544321 1223344445577888889999999999765 444444455555432 2
Q ss_pred CCcEEEEEcCCHHHH
Q 047321 239 HESKILITTHDRSVA 253 (807)
Q Consensus 239 ~gs~IliTTR~~~v~ 253 (807)
.|..||++|++.+.+
T Consensus 189 ~g~tvi~vtHd~~~~ 203 (224)
T 2pcj_A 189 GGTSIVMVTHERELA 203 (224)
T ss_dssp TTCEEEEECSCHHHH
T ss_pred CCCEEEEEcCCHHHH
Confidence 367899999998776
No 224
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.55 E-value=0.0023 Score=69.04 Aligned_cols=178 Identities=17% Similarity=0.119 Sum_probs=91.5
Q ss_pred CccccccchHHHHHHHHhCCCCC-------CCCCceEEEEEccCCChHHHHHHHHHcCcccccccceEEEEEeCCCCCHH
Q 047321 104 GGVCGRVDEKNELLSKLLCGSSE-------QQKGLDVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSNTFEEI 176 (807)
Q Consensus 104 ~~~vGR~~~~~~l~~~L~~~~~~-------~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~ 176 (807)
.++.|-++.+++|.+.+..+-.. +-...+-|.++|++|+|||+||+.+++. ...+| +.+..+.-.+
T Consensus 172 ~digGl~~~k~~l~e~v~~pl~~p~~~~~~g~~~prGiLL~GPPGtGKT~lakAiA~~--~~~~~---~~v~~~~l~~-- 244 (428)
T 4b4t_K 172 ADVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVANS--TKAAF---IRVNGSEFVH-- 244 (428)
T ss_dssp GGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTTTHHHHHHHHHHH--HTCEE---EEEEGGGTCC--
T ss_pred HHhccHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCceEEEECCCCCCHHHHHHHHHHH--hCCCe---EEEecchhhc--
Confidence 36788888888887766321000 0234567899999999999999999983 33332 2333322111
Q ss_pred HHHHHHHHHcCCCCCCCccHHHHHHHHHHHHhCCceEEEEeCCCC---------C-CccC----hHHHHHhhcC--CCCC
Q 047321 177 SVAKAIIEGLGVSAFGLSEFESLMKQIQEYITGKKIFLVLDDVWD---------G-DYKK----WDPFFSCLKN--GHHE 240 (807)
Q Consensus 177 ~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~---------~-~~~~----~~~l~~~l~~--~~~g 240 (807)
.. -......+...+...-...+.++++|++.. . .... ...+...+.. ...+
T Consensus 245 ------------~~-~Ge~e~~ir~lF~~A~~~aP~IifiDEiD~i~~~R~~~~~~~~~~~~r~l~~lL~~ldg~~~~~~ 311 (428)
T 4b4t_K 245 ------------KY-LGEGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGSDREVQRILIELLTQMDGFDQSTN 311 (428)
T ss_dssp ------------SS-CSHHHHHHHHHHHHHHHTCSEEEEEECTHHHHCSCSSSCSCCCCHHHHHHHHHHHHHHHSCSSCS
T ss_pred ------------cc-cchhHHHHHHHHHHHHHcCCCeeechhhhhhhccccCCCCCCChHHHHHHHHHHHHhhCCCCCCC
Confidence 00 111112222233333456799999999831 0 0111 1122333321 2345
Q ss_pred cEEEEEcCCHHHH-HH-hCC---CceEeCCCCChhhH-HHHHHHHHhccCCccCccchHHHHHHHHHHcCCC
Q 047321 241 SKILITTHDRSVA-LQ-LGS---IDIIPVKELGEGEC-WLLFKQIAFLRRSFEDCEKLEPIGRKIASKCKGL 306 (807)
Q Consensus 241 s~IliTTR~~~v~-~~-~~~---~~~~~l~~L~~~~~-~~Lf~~~a~~~~~~~~~~~~~~~~~~I~~~c~gl 306 (807)
..||.||...+.. .. ... ...+++..++..++ ..+|..+.-. .......++ ..|++.+.|.
T Consensus 312 v~vI~aTN~~~~LD~AllRpGRfd~~I~~p~lPd~~~R~~Il~~~~~~-~~l~~~~dl----~~lA~~t~G~ 378 (428)
T 4b4t_K 312 VKVIMATNRADTLDPALLRPGRLDRKIEFPSLRDRRERRLIFGTIASK-MSLAPEADL----DSLIIRNDSL 378 (428)
T ss_dssp EEEEEEESCSSSCCHHHHSSSSEEEEEECCSSCCHHHHHHHHHHHHHS-SCBCTTCCH----HHHHHHTTTC
T ss_pred EEEEEecCChhhcChhhhcCCcceEEEEcCCCCCHHHHHHHHHHHhcC-CCCCcccCH----HHHHHHCCCC
Confidence 5667777543311 11 111 34677876655554 5556554422 221222233 5677777775
No 225
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=97.55 E-value=0.00027 Score=74.92 Aligned_cols=129 Identities=18% Similarity=0.150 Sum_probs=76.0
Q ss_pred CceEEEEEccCCChHHHHHHHHHcCcccc---------------cccceEEEEEeCC----CCCH---------------
Q 047321 130 GLDVISLVGLGGIGKTTLAQLAYNNDEVK---------------RNFEKVIWVCVSN----TFEE--------------- 175 (807)
Q Consensus 130 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~---------------~~f~~~~wv~~~~----~~~~--------------- 175 (807)
.-.+++|+|++|+|||||.+.+..-.... ..-..+.+|.-.. ..++
T Consensus 28 ~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~~~~~~~~~r~ig~VfQ~~~l~p~ltV~eni~~~~~~~~~~~ 107 (381)
T 3rlf_A 28 EGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPPAERGVGMVFQSYALYPHLSVAENMSFGLKLAGAKK 107 (381)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTCCGGGSCEEEECTTCCCCTTSCHHHHHTHHHHHTTCCH
T ss_pred CCCEEEEEcCCCchHHHHHHHHHcCCCCCCeEEEECCEECCCCCHHHCCEEEEecCCcCCCCCCHHHHHHHHHHHcCCCH
Confidence 45699999999999999999996521110 0001122332111 1111
Q ss_pred ---HHHHHHHHHHcCCCC------CCCccHHHHHHHHHHHHhCCceEEEEeCCCCC-CccChHHHHHhhcCC--CCCcEE
Q 047321 176 ---ISVAKAIIEGLGVSA------FGLSEFESLMKQIQEYITGKKIFLVLDDVWDG-DYKKWDPFFSCLKNG--HHESKI 243 (807)
Q Consensus 176 ---~~~~~~i~~~l~~~~------~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~-~~~~~~~l~~~l~~~--~~gs~I 243 (807)
.+...++++.++... ......+...-.|.+.+..++-+|+||+.... |......+...+... ..|..|
T Consensus 108 ~~~~~~v~~~l~~~~L~~~~~r~p~~LSGGqrQRVaiArAL~~~P~lLLLDEPts~LD~~~~~~l~~~l~~l~~~~g~ti 187 (381)
T 3rlf_A 108 EVINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTM 187 (381)
T ss_dssp HHHHHHHHHHHHHTTCGGGTTCCGGGSCHHHHHHHHHHHHHHHCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEE
T ss_pred HHHHHHHHHHHHHcCCchhhcCChhHCCHHHHHHHHHHHHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHhCCCEE
Confidence 122344555555432 12233444455678888888999999999765 444444455555432 236789
Q ss_pred EEEcCCHHHHHHhCC
Q 047321 244 LITTHDRSVALQLGS 258 (807)
Q Consensus 244 liTTR~~~v~~~~~~ 258 (807)
|++|++.+.+..++.
T Consensus 188 i~vTHd~~ea~~~aD 202 (381)
T 3rlf_A 188 IYVTHDQVEAMTLAD 202 (381)
T ss_dssp EEECSCHHHHHHHCS
T ss_pred EEEECCHHHHHHhCC
Confidence 999999887766544
No 226
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=97.53 E-value=0.00036 Score=73.49 Aligned_cols=129 Identities=16% Similarity=0.209 Sum_probs=76.1
Q ss_pred CceEEEEEccCCChHHHHHHHHHcCcccc---------------cccceEEEEEeC----CCCCHH--------------
Q 047321 130 GLDVISLVGLGGIGKTTLAQLAYNNDEVK---------------RNFEKVIWVCVS----NTFEEI-------------- 176 (807)
Q Consensus 130 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~---------------~~f~~~~wv~~~----~~~~~~-------------- 176 (807)
.-.+++|+|++|+|||||.+.++.-.... ..-..+.+|.-. ...++.
T Consensus 40 ~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~l~~~~~~~ 119 (355)
T 1z47_A 40 EGEMVGLLGPSGSGKTTILRLIAGLERPTKGDVWIGGKRVTDLPPQKRNVGLVFQNYALFQHMTVYDNVSFGLREKRVPK 119 (355)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTCCGGGSSEEEECGGGCCCTTSCHHHHHHHHHHHTTCCH
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCEECCcCChhhCcEEEEecCcccCCCCCHHHHHHHHHHHcCCCH
Confidence 44699999999999999999986421100 000112333211 111111
Q ss_pred ----HHHHHHHHHcCCCC------CCCccHHHHHHHHHHHHhCCceEEEEeCCCCC-CccChHHHHHhhcCC--CCCcEE
Q 047321 177 ----SVAKAIIEGLGVSA------FGLSEFESLMKQIQEYITGKKIFLVLDDVWDG-DYKKWDPFFSCLKNG--HHESKI 243 (807)
Q Consensus 177 ----~~~~~i~~~l~~~~------~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~-~~~~~~~l~~~l~~~--~~gs~I 243 (807)
+...++++.++... ......+...-.+.+.+-.++-+|+||+.... |...-..+...+... ..|..|
T Consensus 120 ~~~~~~v~~~l~~~gL~~~~~r~~~~LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tv 199 (355)
T 1z47_A 120 DEMDARVRELLRFMRLESYANRFPHELSGGQQQRVALARALAPRPQVLLFDEPFAAIDTQIRRELRTFVRQVHDEMGVTS 199 (355)
T ss_dssp HHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTCCSSHHHHHHHHHHHHHHHHHHTCEE
T ss_pred HHHHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEE
Confidence 12334555555432 11233444555688889999999999999765 444444455554432 236679
Q ss_pred EEEcCCHHHHHHhCC
Q 047321 244 LITTHDRSVALQLGS 258 (807)
Q Consensus 244 liTTR~~~v~~~~~~ 258 (807)
|++|++.+.+..+..
T Consensus 200 i~vTHd~~~a~~~ad 214 (355)
T 1z47_A 200 VFVTHDQEEALEVAD 214 (355)
T ss_dssp EEECSCHHHHHHHCS
T ss_pred EEECCCHHHHHHhCC
Confidence 999999887766544
No 227
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=97.53 E-value=0.00045 Score=72.68 Aligned_cols=129 Identities=17% Similarity=0.233 Sum_probs=75.6
Q ss_pred CceEEEEEccCCChHHHHHHHHHcCcccc---ccc----------------ceEEEEEeCC----CCCH-----------
Q 047321 130 GLDVISLVGLGGIGKTTLAQLAYNNDEVK---RNF----------------EKVIWVCVSN----TFEE----------- 175 (807)
Q Consensus 130 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~---~~f----------------~~~~wv~~~~----~~~~----------- 175 (807)
.-.+++|+|++|+|||||.+.++.-.... -.| ..+.+|.-.. ..++
T Consensus 29 ~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~i~~~~~~~~~~~r~ig~vfQ~~~l~p~ltV~eni~~~l~~~ 108 (359)
T 3fvq_A 29 PGEILFIIGASGCGKTTLLRCLAGFEQPDSGEISLSGKTIFSKNTNLPVRERRLGYLVQEGVLFPHLTVYRNIAYGLGNG 108 (359)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHHTSSCCSEEEEEETTEEEESSSCBCCGGGSCCEEECTTCCCCTTSCHHHHHHTTSTTS
T ss_pred CCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEECcccccccchhhCCEEEEeCCCcCCCCCCHHHHHHHHHHHc
Confidence 45699999999999999999986421110 000 1122221100 0011
Q ss_pred -------HHHHHHHHHHcCCCC------CCCccHHHHHHHHHHHHhCCceEEEEeCCCCC-CccChHHHHHhhcC--CCC
Q 047321 176 -------ISVAKAIIEGLGVSA------FGLSEFESLMKQIQEYITGKKIFLVLDDVWDG-DYKKWDPFFSCLKN--GHH 239 (807)
Q Consensus 176 -------~~~~~~i~~~l~~~~------~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~-~~~~~~~l~~~l~~--~~~ 239 (807)
.+...++++.++... ......+...-.+.+.+-.++-+|+||+.... |...-..+...+.. ...
T Consensus 109 ~~~~~~~~~~v~~~l~~~gL~~~~~r~~~~LSGGq~QRValArAL~~~P~lLLLDEPts~LD~~~r~~l~~~l~~~~~~~ 188 (359)
T 3fvq_A 109 KGRTAQERQRIEAMLELTGISELAGRYPHELSGGQQQRAALARALAPDPELILLDEPFSALDEQLRRQIREDMIAALRAN 188 (359)
T ss_dssp SCCSHHHHHHHHHHHHHHTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHT
T ss_pred CCChHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhC
Confidence 122345555555432 12233444555688889999999999999765 44333444443322 134
Q ss_pred CcEEEEEcCCHHHHHHhCC
Q 047321 240 ESKILITTHDRSVALQLGS 258 (807)
Q Consensus 240 gs~IliTTR~~~v~~~~~~ 258 (807)
|..||++|++.+.+..++.
T Consensus 189 g~tvi~vTHd~~ea~~~aD 207 (359)
T 3fvq_A 189 GKSAVFVSHDREEALQYAD 207 (359)
T ss_dssp TCEEEEECCCHHHHHHHCS
T ss_pred CCEEEEEeCCHHHHHHHCC
Confidence 7789999999887766544
No 228
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=97.53 E-value=0.00028 Score=71.83 Aligned_cols=60 Identities=17% Similarity=0.116 Sum_probs=43.2
Q ss_pred HHHHHHHHHHHHhCCceEEEEeCCCCC-CccChHHHHHhhcCCC--CCcEEEEEcCCHHHHHH
Q 047321 196 FESLMKQIQEYITGKKIFLVLDDVWDG-DYKKWDPFFSCLKNGH--HESKILITTHDRSVALQ 255 (807)
Q Consensus 196 ~~~~~~~l~~~l~~k~~LlVlDdv~~~-~~~~~~~l~~~l~~~~--~gs~IliTTR~~~v~~~ 255 (807)
.+...-.+.+.+-.++-+|+||++... |......+...+.... .|..||++|++.+.+..
T Consensus 160 Gq~QRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~g~tviivtHd~~~~~~ 222 (271)
T 2ixe_A 160 GQRQAVALARALIRKPRLLILDNATSALDAGNQLRVQRLLYESPEWASRTVLLITQQLSLAER 222 (271)
T ss_dssp HHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHCTTTTTSEEEEECSCHHHHTT
T ss_pred HHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHHHHHh
Confidence 344455577888889999999999765 5555555666665543 37789999999887653
No 229
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=97.52 E-value=0.00021 Score=73.81 Aligned_cols=61 Identities=15% Similarity=0.103 Sum_probs=39.1
Q ss_pred cHHHHHHHHHHHHhCCceEEEEeCCCCC-CccChHHHHHhhcCCCCCcEEEEEcCCHHHHHH
Q 047321 195 EFESLMKQIQEYITGKKIFLVLDDVWDG-DYKKWDPFFSCLKNGHHESKILITTHDRSVALQ 255 (807)
Q Consensus 195 ~~~~~~~~l~~~l~~k~~LlVlDdv~~~-~~~~~~~l~~~l~~~~~gs~IliTTR~~~v~~~ 255 (807)
..+...-.|.+.+-.++-+|+||++... |...-..+...+.....+..||++|++...+..
T Consensus 193 GGqrQRvaiARAL~~~p~iLlLDEPts~LD~~~~~~i~~~l~~l~~~~Tvi~itH~l~~~~~ 254 (306)
T 3nh6_A 193 GGEKQRVAIARTILKAPGIILLDEATSALDTSNERAIQASLAKVCANRTTIVVAHRLSTVVN 254 (306)
T ss_dssp HHHHHHHHHHHHHHHCCSEEEEECCSSCCCHHHHHHHHHHHHHHHTTSEEEEECCSHHHHHT
T ss_pred HHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEEcChHHHHc
Confidence 3344445577777778888999999765 433333455544433335678889998877654
No 230
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=97.52 E-value=0.00061 Score=64.53 Aligned_cols=66 Identities=8% Similarity=0.087 Sum_probs=39.9
Q ss_pred HhCCceEEEEeC--CCCC-CccChHHHHHhhcCCCCCcEEEEEc---CCHHHHHHhCC---CceEeCCCCChhhHHH
Q 047321 207 ITGKKIFLVLDD--VWDG-DYKKWDPFFSCLKNGHHESKILITT---HDRSVALQLGS---IDIIPVKELGEGECWL 274 (807)
Q Consensus 207 l~~k~~LlVlDd--v~~~-~~~~~~~l~~~l~~~~~gs~IliTT---R~~~v~~~~~~---~~~~~l~~L~~~~~~~ 274 (807)
+..++-+++||+ ..+. +....+.+...+.. .+..+|++| ++...+..+.. ..++++...+.++..+
T Consensus 96 l~~~p~llilDEigp~~~ld~~~~~~l~~~l~~--~~~~~i~~~H~~h~~~~~~~i~~r~~~~i~~~~~~~r~~~~~ 170 (178)
T 1ye8_A 96 KKDRRKVIIIDEIGKMELFSKKFRDLVRQIMHD--PNVNVVATIPIRDVHPLVKEIRRLPGAVLIELTPENRDVILE 170 (178)
T ss_dssp HHCTTCEEEECCCSTTGGGCHHHHHHHHHHHTC--TTSEEEEECCSSCCSHHHHHHHTCTTCEEEECCTTTTTTHHH
T ss_pred cccCCCEEEEeCCCCcccCCHHHHHHHHHHHhc--CCCeEEEEEccCCCchHHHHHHhcCCcEEEEecCcCHHHHHH
Confidence 778888999999 4332 33333445555554 345466666 46666655443 3578877776555433
No 231
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=97.51 E-value=0.00079 Score=69.03 Aligned_cols=126 Identities=12% Similarity=0.110 Sum_probs=71.4
Q ss_pred CceEEEEEccCCChHHHHHHHHHcCcccc-c--ccc-eEEEEEeCCC-C--CHHHH----------HHHHHHHcCCC---
Q 047321 130 GLDVISLVGLGGIGKTTLAQLAYNNDEVK-R--NFE-KVIWVCVSNT-F--EEISV----------AKAIIEGLGVS--- 189 (807)
Q Consensus 130 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~-~--~f~-~~~wv~~~~~-~--~~~~~----------~~~i~~~l~~~--- 189 (807)
.-.+++|+|++|+|||||++.+..-.... + .|+ .+.++.-... + ++.+- ...+++..+..
T Consensus 63 ~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~i~~v~Q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~l~~~l 142 (290)
T 2bbs_A 63 RGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGRISFCSQNSWIMPGTIKENIIGVSYDEYRYRSVIKACQLEEDI 142 (290)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHTTSSCEEEEEEECCSCEEEECSSCCCCSSBHHHHHHTTCCCHHHHHHHHHHTTCHHHH
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEEEEEeCCCccCcccHHHHhhCcccchHHHHHHHHHhChHHHH
Confidence 45699999999999999999997632211 1 121 1223321111 1 11111 11122211110
Q ss_pred --------------CCCCccHHHHHHHHHHHHhCCceEEEEeCCCCC-CccChHHHHHhh-cCCCCCcEEEEEcCCHHHH
Q 047321 190 --------------AFGLSEFESLMKQIQEYITGKKIFLVLDDVWDG-DYKKWDPFFSCL-KNGHHESKILITTHDRSVA 253 (807)
Q Consensus 190 --------------~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~-~~~~~~~l~~~l-~~~~~gs~IliTTR~~~v~ 253 (807)
.......+...-.+.+.+..++-+++||++... |......+...+ .....|..||++|++.+.+
T Consensus 143 ~~~~~~~~~~~~~~~~~LSgGq~QRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~ll~~~~~~~tviivtHd~~~~ 222 (290)
T 2bbs_A 143 SKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKMEHL 222 (290)
T ss_dssp HTSTTGGGCBC----CCCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHCCCCCTTTSEEEEECCCHHHH
T ss_pred HhccccccchhcCccCcCCHHHHHHHHHHHHHHCCCCEEEEECCcccCCHHHHHHHHHHHHHHhhCCCEEEEEecCHHHH
Confidence 012233344445577888889999999999765 544445566643 3334577899999998776
Q ss_pred HH
Q 047321 254 LQ 255 (807)
Q Consensus 254 ~~ 255 (807)
..
T Consensus 223 ~~ 224 (290)
T 2bbs_A 223 KK 224 (290)
T ss_dssp HH
T ss_pred Hc
Confidence 53
No 232
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=97.51 E-value=0.00047 Score=67.34 Aligned_cols=124 Identities=17% Similarity=0.136 Sum_probs=71.9
Q ss_pred CceEEEEEccCCChHHHHHHHHHcCcccc-c--cc---------ceEEEEEeCCC----CCHH----------------H
Q 047321 130 GLDVISLVGLGGIGKTTLAQLAYNNDEVK-R--NF---------EKVIWVCVSNT----FEEI----------------S 177 (807)
Q Consensus 130 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~-~--~f---------~~~~wv~~~~~----~~~~----------------~ 177 (807)
.-.+++|+|++|+|||||++.++.-.... + .+ ..+.++.-... .++. +
T Consensus 34 ~Ge~~~iiG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~ 113 (214)
T 1sgw_A 34 KGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVPITKVKGKIFFLPEEIIVPRKISVEDYLKAVASLYGVKVNKN 113 (214)
T ss_dssp TTCCEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGGGGGEEEECSSCCCCTTSBHHHHHHHHHHHTTCCCCHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEhhhhcCcEEEEeCCCcCCCCCCHHHHHHHHHHhcCCchHHH
Confidence 34689999999999999999986521110 0 01 11333321111 1211 1
Q ss_pred HHHHHHHHcCCCCCC-----CccHHHHHHHHHHHHhCCceEEEEeCCCCC-CccChHHHHHhhcCC-CCCcEEEEEcCCH
Q 047321 178 VAKAIIEGLGVSAFG-----LSEFESLMKQIQEYITGKKIFLVLDDVWDG-DYKKWDPFFSCLKNG-HHESKILITTHDR 250 (807)
Q Consensus 178 ~~~~i~~~l~~~~~~-----~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~-~~~~~~~l~~~l~~~-~~gs~IliTTR~~ 250 (807)
...++++.++....+ ....+...-.+.+.+..++-+++||++... |......+...+... ..|..||++|++.
T Consensus 114 ~~~~~l~~~gl~~~~~~~~~LSgGqkqrv~laraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~g~tiiivtHd~ 193 (214)
T 1sgw_A 114 EIMDALESVEVLDLKKKLGELSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGIVIISSREE 193 (214)
T ss_dssp HHHHHHHHTTCCCTTSBGGGSCHHHHHHHHHHHHTTSCCSEEEEESTTTTSCTTTHHHHHHHHHHHHHHHSEEEEEESSC
T ss_pred HHHHHHHHcCCCcCCCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCH
Confidence 233455555543221 122344445577788889999999999765 555555565555432 2366799999986
Q ss_pred HHH
Q 047321 251 SVA 253 (807)
Q Consensus 251 ~v~ 253 (807)
+.+
T Consensus 194 ~~~ 196 (214)
T 1sgw_A 194 LSY 196 (214)
T ss_dssp CTT
T ss_pred HHH
Confidence 543
No 233
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=97.50 E-value=0.00033 Score=70.26 Aligned_cols=128 Identities=19% Similarity=0.202 Sum_probs=72.0
Q ss_pred CceEEEEEccCCChHHHHHHHHHcCccccc--cc--------------ceEEEEEeCCC----CCH-------------H
Q 047321 130 GLDVISLVGLGGIGKTTLAQLAYNNDEVKR--NF--------------EKVIWVCVSNT----FEE-------------I 176 (807)
Q Consensus 130 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~--~f--------------~~~~wv~~~~~----~~~-------------~ 176 (807)
.-.+++|+|++|+|||||++.++.-....+ .| ..+.|+.-... .++ .
T Consensus 25 ~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~ 104 (249)
T 2qi9_C 25 AGEILHLVGPNGAGKSTLLARMAGMTSGKGSIQFAGQPLEAWSATKLALHRAYLSQQQTPPFATPVWHYLTLHQHDKTRT 104 (249)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSSCCEEEEEETTEEGGGSCHHHHHHHEEEECSCCCCCTTCBHHHHHHTTCSSTTCH
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCCCCCeEEEECCEECCcCCHHHHhceEEEECCCCccCCCCcHHHHHHHhhccCCcH
Confidence 346899999999999999999875311000 00 01223321110 111 2
Q ss_pred HHHHHHHHHcCCCCC------CCccHHHHHHHHHHHHhCCce-------EEEEeCCCCC-CccChHHHHHhhcCC-CCCc
Q 047321 177 SVAKAIIEGLGVSAF------GLSEFESLMKQIQEYITGKKI-------FLVLDDVWDG-DYKKWDPFFSCLKNG-HHES 241 (807)
Q Consensus 177 ~~~~~i~~~l~~~~~------~~~~~~~~~~~l~~~l~~k~~-------LlVlDdv~~~-~~~~~~~l~~~l~~~-~~gs 241 (807)
+...++++.++.... .....+...-.+.+.+..++- +++||++... |......+...+... ..|.
T Consensus 105 ~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lAraL~~~p~~~~~~~~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~ 184 (249)
T 2qi9_C 105 ELLNDVAGALALDDKLGRSTNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQQSALDKILSALSQQGL 184 (249)
T ss_dssp HHHHHHHHHTTCGGGTTSBGGGCCHHHHHHHHHHHHHHHHCTTTCTTCCEEEESSTTTTCCHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHHcCCCcCCCCCeEEEEECCcccCCHHHHHHHHHHHHHHHhCCC
Confidence 223445555554321 112233334446666655555 9999999765 544445555555432 2367
Q ss_pred EEEEEcCCHHHHHHhC
Q 047321 242 KILITTHDRSVALQLG 257 (807)
Q Consensus 242 ~IliTTR~~~v~~~~~ 257 (807)
.||++|++.+.+..+.
T Consensus 185 tviivtHd~~~~~~~~ 200 (249)
T 2qi9_C 185 AIVMSSHDLNHTLRHA 200 (249)
T ss_dssp EEEEECSCHHHHHHHC
T ss_pred EEEEEeCCHHHHHHhC
Confidence 8999999988765544
No 234
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=97.49 E-value=0.00047 Score=72.88 Aligned_cols=129 Identities=19% Similarity=0.124 Sum_probs=75.7
Q ss_pred CceEEEEEccCCChHHHHHHHHHcCcccc---------------cccceEEEEEeCC----CCCHH--------------
Q 047321 130 GLDVISLVGLGGIGKTTLAQLAYNNDEVK---------------RNFEKVIWVCVSN----TFEEI-------------- 176 (807)
Q Consensus 130 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~---------------~~f~~~~wv~~~~----~~~~~-------------- 176 (807)
.-.+++|+|++|+|||||.+.++.-.... ..-..+.+|.-.. ..++.
T Consensus 28 ~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~ 107 (362)
T 2it1_A 28 DGEFMALLGPSGSGKSTLLYTIAGIYKPTSGKIYFDEKDVTELPPKDRNVGLVFQNWALYPHMTVYKNIAFPLELRKAPR 107 (362)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGGGTTEEEECTTCCCCTTSCHHHHHHHHHHHTTCCH
T ss_pred CCCEEEEECCCCchHHHHHHHHhcCCCCCceEEEECCEECCcCCHhHCcEEEEecCcccCCCCCHHHHHHHHHHhcCCCH
Confidence 45699999999999999999986521110 0001123332111 11111
Q ss_pred ----HHHHHHHHHcCCCCC------CCccHHHHHHHHHHHHhCCceEEEEeCCCCC-CccChHHHHHhhcCC--CCCcEE
Q 047321 177 ----SVAKAIIEGLGVSAF------GLSEFESLMKQIQEYITGKKIFLVLDDVWDG-DYKKWDPFFSCLKNG--HHESKI 243 (807)
Q Consensus 177 ----~~~~~i~~~l~~~~~------~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~-~~~~~~~l~~~l~~~--~~gs~I 243 (807)
+...++++.++.... .....+...-.+.+.+-.++-+|+||+..+. |...-..+...+... ..|..|
T Consensus 108 ~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tv 187 (362)
T 2it1_A 108 EEIDKKVREVAKMLHIDKLLNRYPWQLSGGQQQRVAIARALVKEPEVLLLDEPLSNLDALLRLEVRAELKRLQKELGITT 187 (362)
T ss_dssp HHHHHHHHHHHHHTTCTTCTTCCGGGSCHHHHHHHHHHHHHTTCCSEEEEESGGGGSCHHHHHHHHHHHHHHHHHHTCEE
T ss_pred HHHHHHHHHHHHHcCCchHhhCChhhCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHHhCCCEE
Confidence 123345555554321 1233444555688889999999999998654 444444455555432 236679
Q ss_pred EEEcCCHHHHHHhCC
Q 047321 244 LITTHDRSVALQLGS 258 (807)
Q Consensus 244 liTTR~~~v~~~~~~ 258 (807)
|++|++.+.+..++.
T Consensus 188 i~vTHd~~~a~~~ad 202 (362)
T 2it1_A 188 VYVTHDQAEALAMAD 202 (362)
T ss_dssp EEEESCHHHHHHHCS
T ss_pred EEECCCHHHHHHhCC
Confidence 999999887766543
No 235
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=97.49 E-value=0.00037 Score=68.59 Aligned_cols=87 Identities=18% Similarity=0.167 Sum_probs=53.7
Q ss_pred CceEEEEEccCCChHHHHHHHHHcCcccccccceEEEEEeCCCCCHHHHHHHHHHHcCC-----------C-CCCCccHH
Q 047321 130 GLDVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSNTFEEISVAKAIIEGLGV-----------S-AFGLSEFE 197 (807)
Q Consensus 130 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~-----------~-~~~~~~~~ 197 (807)
...++.|+|++|+||||||..++. ..-..++|++....++...+.. +.+.++. . .....+..
T Consensus 19 ~G~~~~i~G~~GsGKTtl~~~l~~-----~~~~~v~~i~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (220)
T 2cvh_A 19 PGVLTQVYGPYASGKTTLALQTGL-----LSGKKVAYVDTEGGFSPERLVQ-MAETRGLNPEEALSRFILFTPSDFKEQR 92 (220)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHH-----HHCSEEEEEESSCCCCHHHHHH-HHHTTTCCHHHHHHHEEEECCTTTSHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH-----HcCCcEEEEECCCCCCHHHHHH-HHHhcCCChHHHhhcEEEEecCCHHHHH
Confidence 457999999999999999999886 1223577888776566654433 3333221 1 11122223
Q ss_pred HHHHHHHHHHhCCceEEEEeCCCCC
Q 047321 198 SLMKQIQEYITGKKIFLVLDDVWDG 222 (807)
Q Consensus 198 ~~~~~l~~~l~~k~~LlVlDdv~~~ 222 (807)
.....++..+..+.-++|+|.+...
T Consensus 93 ~~~~~~~~l~~~~~~lliiD~~~~~ 117 (220)
T 2cvh_A 93 RVIGSLKKTVDSNFALVVVDSITAH 117 (220)
T ss_dssp HHHHHHHHHCCTTEEEEEEECCCCC
T ss_pred HHHHHHHHHhhcCCCEEEEcCcHHH
Confidence 3444444444335789999998643
No 236
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=97.49 E-value=0.00046 Score=70.07 Aligned_cols=127 Identities=19% Similarity=0.194 Sum_probs=73.0
Q ss_pred CceEEEEEccCCChHHHHHHHHHcCcccc-------c------cc-ceEEEEEeCC-----CCCH---------------
Q 047321 130 GLDVISLVGLGGIGKTTLAQLAYNNDEVK-------R------NF-EKVIWVCVSN-----TFEE--------------- 175 (807)
Q Consensus 130 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~-------~------~f-~~~~wv~~~~-----~~~~--------------- 175 (807)
.-.+++|+|++|+|||||++.++.-.... + .+ ..+.++.-.. ..++
T Consensus 32 ~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~ 111 (266)
T 2yz2_A 32 EGECLLVAGNTGSGKSTLLQIVAGLIEPTSGDVLYDGERKKGYEIRRNIGIAFQYPEDQFFAERVFDEVAFAVKNFYPDR 111 (266)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECCHHHHGGGEEEECSSGGGGCCCSSHHHHHHHTTTTTCTTS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCEECchHHhhhhEEEEeccchhhcCCCcHHHHHHHHHHhcCCHH
Confidence 45699999999999999999986421100 0 00 1122332110 0111
Q ss_pred --HHHHHHHHHHcCCC--CC------CCccHHHHHHHHHHHHhCCceEEEEeCCCCC-CccChHHHHHhhcCC-CCCcEE
Q 047321 176 --ISVAKAIIEGLGVS--AF------GLSEFESLMKQIQEYITGKKIFLVLDDVWDG-DYKKWDPFFSCLKNG-HHESKI 243 (807)
Q Consensus 176 --~~~~~~i~~~l~~~--~~------~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~-~~~~~~~l~~~l~~~-~~gs~I 243 (807)
.+...++++.++.. .. .....+...-.+.+.+..++-+++||++... |......+...+... ..|..|
T Consensus 112 ~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGq~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~ti 191 (266)
T 2yz2_A 112 DPVPLVKKAMEFVGLDFDSFKDRVPFFLSGGEKRRVAIASVIVHEPDILILDEPLVGLDREGKTDLLRIVEKWKTLGKTV 191 (266)
T ss_dssp CSHHHHHHHHHHTTCCHHHHTTCCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEE
T ss_pred HHHHHHHHHHHHcCcCCcccccCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCccccCCHHHHHHHHHHHHHHHHcCCEE
Confidence 11233445554443 11 1223333444577888889999999999765 544445555555432 236789
Q ss_pred EEEcCCHHHHHHh
Q 047321 244 LITTHDRSVALQL 256 (807)
Q Consensus 244 liTTR~~~v~~~~ 256 (807)
|++|++.+.+..+
T Consensus 192 i~vtHd~~~~~~~ 204 (266)
T 2yz2_A 192 ILISHDIETVINH 204 (266)
T ss_dssp EEECSCCTTTGGG
T ss_pred EEEeCCHHHHHHh
Confidence 9999997665543
No 237
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=97.47 E-value=0.00035 Score=73.51 Aligned_cols=129 Identities=16% Similarity=0.159 Sum_probs=75.7
Q ss_pred CceEEEEEccCCChHHHHHHHHHcCcccc-c--ccc------------eEEEEEeC----CCCCHH--------------
Q 047321 130 GLDVISLVGLGGIGKTTLAQLAYNNDEVK-R--NFE------------KVIWVCVS----NTFEEI-------------- 176 (807)
Q Consensus 130 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~-~--~f~------------~~~wv~~~----~~~~~~-------------- 176 (807)
.-.+++|+|++|+|||||.+.++.-.... + .|+ .+.+|.-. ...++.
T Consensus 25 ~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv~enl~~~~~~~~~~~ 104 (348)
T 3d31_A 25 SGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDLSPEKHDIAFVYQNYSLFPHMNVKKNLEFGMRMKKIKD 104 (348)
T ss_dssp TTCEEEEECCCTHHHHHHHHHHHTSSCCSEEEEEETTEECTTSCHHHHTCEEECTTCCCCTTSCHHHHHHHHHHHHCCCC
T ss_pred CCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCEECCCCchhhCcEEEEecCcccCCCCCHHHHHHHHHHHcCCCH
Confidence 44699999999999999999997521110 0 010 11222111 011221
Q ss_pred -HHHHHHHHHcCCCCC------CCccHHHHHHHHHHHHhCCceEEEEeCCCCC-CccChHHHHHhhcCC--CCCcEEEEE
Q 047321 177 -SVAKAIIEGLGVSAF------GLSEFESLMKQIQEYITGKKIFLVLDDVWDG-DYKKWDPFFSCLKNG--HHESKILIT 246 (807)
Q Consensus 177 -~~~~~i~~~l~~~~~------~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~-~~~~~~~l~~~l~~~--~~gs~IliT 246 (807)
+...++++.++.... .....+...-.+.+.+-.++-+|+||+.... |...-..+...+... ..|..||++
T Consensus 105 ~~~v~~~l~~~~L~~~~~~~~~~LSgGq~QRvalAraL~~~P~lLLLDEP~s~LD~~~~~~l~~~l~~l~~~~g~tii~v 184 (348)
T 3d31_A 105 PKRVLDTARDLKIEHLLDRNPLTLSGGEQQRVALARALVTNPKILLLDEPLSALDPRTQENAREMLSVLHKKNKLTVLHI 184 (348)
T ss_dssp HHHHHHHHHHTTCTTTTTSCGGGSCHHHHHHHHHHHHTTSCCSEEEEESSSTTSCHHHHHHHHHHHHHHHHHTTCEEEEE
T ss_pred HHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHHhcCCEEEEE
Confidence 123345555554321 1233444455678888899999999999765 444444455555432 236789999
Q ss_pred cCCHHHHHHhCC
Q 047321 247 THDRSVALQLGS 258 (807)
Q Consensus 247 TR~~~v~~~~~~ 258 (807)
|++.+.+..+..
T Consensus 185 THd~~~~~~~ad 196 (348)
T 3d31_A 185 THDQTEARIMAD 196 (348)
T ss_dssp ESCHHHHHHHCS
T ss_pred eCCHHHHHHhCC
Confidence 999877766543
No 238
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=97.46 E-value=0.00049 Score=72.62 Aligned_cols=129 Identities=17% Similarity=0.139 Sum_probs=76.1
Q ss_pred CceEEEEEccCCChHHHHHHHHHcCcccc------------c---ccceEEEEEeCC----CCCHH--------------
Q 047321 130 GLDVISLVGLGGIGKTTLAQLAYNNDEVK------------R---NFEKVIWVCVSN----TFEEI-------------- 176 (807)
Q Consensus 130 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~------------~---~f~~~~wv~~~~----~~~~~-------------- 176 (807)
.-.+++|+|++|+|||||.+.++.-.... . .-..+.+|.-.. ..++.
T Consensus 28 ~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~ 107 (359)
T 2yyz_A 28 DGEFVALLGPSGCGKTTTLLMLAGIYKPTSGEIYFDDVLVNDIPPKYREVGMVFQNYALYPHMTVFENIAFPLRARRISK 107 (359)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGGGTTEEEECSSCCCCTTSCHHHHHHGGGSSSCSHH
T ss_pred CCCEEEEEcCCCchHHHHHHHHHCCCCCCccEEEECCEECCCCChhhCcEEEEecCcccCCCCCHHHHHHHHHHhcCCCH
Confidence 45689999999999999999986421100 0 001123332110 01111
Q ss_pred ----HHHHHHHHHcCCCC------CCCccHHHHHHHHHHHHhCCceEEEEeCCCCC-CccChHHHHHhhcCC--CCCcEE
Q 047321 177 ----SVAKAIIEGLGVSA------FGLSEFESLMKQIQEYITGKKIFLVLDDVWDG-DYKKWDPFFSCLKNG--HHESKI 243 (807)
Q Consensus 177 ----~~~~~i~~~l~~~~------~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~-~~~~~~~l~~~l~~~--~~gs~I 243 (807)
+...++++.++... ......+...-.+.+.+-.++-+|+||+..+. |...-..+...+... ..|..|
T Consensus 108 ~~~~~~v~~~l~~~~L~~~~~r~~~~LSgGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tv 187 (359)
T 2yyz_A 108 DEVEKRVVEIARKLLIDNLLDRKPTQLSGGQQQRVALARALVKQPKVLLFDEPLSNLDANLRMIMRAEIKHLQQELGITS 187 (359)
T ss_dssp HHTTHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEE
T ss_pred HHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEE
Confidence 12344556555432 11233444555688889999999999999765 444444455555432 236679
Q ss_pred EEEcCCHHHHHHhCC
Q 047321 244 LITTHDRSVALQLGS 258 (807)
Q Consensus 244 liTTR~~~v~~~~~~ 258 (807)
|++|++.+.+..++.
T Consensus 188 i~vTHd~~~~~~~ad 202 (359)
T 2yyz_A 188 VYVTHDQAEAMTMAS 202 (359)
T ss_dssp EEEESCHHHHHHHCS
T ss_pred EEEcCCHHHHHHhCC
Confidence 999999887766544
No 239
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=97.45 E-value=0.00021 Score=72.20 Aligned_cols=61 Identities=15% Similarity=0.157 Sum_probs=40.5
Q ss_pred HHHHHHHHHHHhCCceEEEEeCCCCC-CccChHHHHHhhcCC-CCCcEEEEEcCCHHHHHHhC
Q 047321 197 ESLMKQIQEYITGKKIFLVLDDVWDG-DYKKWDPFFSCLKNG-HHESKILITTHDRSVALQLG 257 (807)
Q Consensus 197 ~~~~~~l~~~l~~k~~LlVlDdv~~~-~~~~~~~l~~~l~~~-~~gs~IliTTR~~~v~~~~~ 257 (807)
+...-.+.+.+..++-+|+||++... |...-..+...+... ..|..||++|++.+.+..+.
T Consensus 158 qkQrv~iAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~~~~~~~ 220 (257)
T 1g6h_A 158 QMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAKGITFLIIEHRLDIVLNYI 220 (257)
T ss_dssp HHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCSTTGGGC
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhC
Confidence 33444577788888999999999765 444444455554432 23678999999976654443
No 240
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=97.44 E-value=0.00057 Score=69.09 Aligned_cols=60 Identities=15% Similarity=0.132 Sum_probs=40.4
Q ss_pred cHHHHHHHHHHHHhCCceEEEEeCCCCC-CccChHHHHHhhcCCCCCcEEEEEcCCHHHHH
Q 047321 195 EFESLMKQIQEYITGKKIFLVLDDVWDG-DYKKWDPFFSCLKNGHHESKILITTHDRSVAL 254 (807)
Q Consensus 195 ~~~~~~~~l~~~l~~k~~LlVlDdv~~~-~~~~~~~l~~~l~~~~~gs~IliTTR~~~v~~ 254 (807)
..+...-.+.+.+-.++-+++||++... |......+...+.....|..||++|++...+.
T Consensus 158 gGqkqRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~l~~~~tviivtH~~~~~~ 218 (260)
T 2ghi_A 158 GGERQRIAIARCLLKDPKIVIFDEATSSLDSKTEYLFQKAVEDLRKNRTLIIIAHRLSTIS 218 (260)
T ss_dssp HHHHHHHHHHHHHHHCCSEEEEECCCCTTCHHHHHHHHHHHHHHTTTSEEEEECSSGGGST
T ss_pred HHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHhcCCCEEEEEcCCHHHHH
Confidence 3444445577777788889999999765 44444445555543334678999999977654
No 241
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=97.42 E-value=0.0003 Score=74.82 Aligned_cols=86 Identities=20% Similarity=0.279 Sum_probs=68.1
Q ss_pred cccCcccccccccCCCccccchhhhccccCCCCCCcccEEEEccCCCCCCCcc-cccCCCCccEEeeccCcccccccccc
Q 047321 673 VIAFPKLKSLEIDGMKELEEWNYRITRKENISIMPRLSSLQIMNCRKLKALPD-YLLQTIALQKLSIYSCDLLEELPILE 751 (807)
Q Consensus 673 ~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~lp~-~l~~l~~L~~L~l~~c~~l~~lP~~~ 751 (807)
+..+++|+.|+|++++.+..++. ..+..+++|+.|+|+++ ++..+|. .+..+++|+.|+|++ +.|..+|
T Consensus 27 l~~~~~L~~L~l~~~n~l~~~~~-----~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~l~~L~~L~l~~-N~l~~~~--- 96 (347)
T 2ifg_A 27 LPGAENLTELYIENQQHLQHLEL-----RDLRGLGELRNLTIVKS-GLRFVAPDAFHFTPRLSRLNLSF-NALESLS--- 96 (347)
T ss_dssp SCSCSCCSEEECCSCSSCCEECG-----GGSCSCCCCSEEECCSS-CCCEECTTGGGSCSCCCEEECCS-SCCSCCC---
T ss_pred CCCCCCeeEEEccCCCCCCCcCh-----hHhccccCCCEEECCCC-ccceeCHHHhcCCcCCCEEeCCC-CccceeC---
Confidence 55788999999987668887774 45678999999999998 7887765 568999999999999 4788887
Q ss_pred ccc-CCCCCCCCeeeeccCC
Q 047321 752 DRR-TTDIPRLSSLAIWYCP 770 (807)
Q Consensus 752 ~~~-~~~l~~L~~L~i~~c~ 770 (807)
.. +..++ |+.|++.+++
T Consensus 97 -~~~~~~~~-L~~l~l~~N~ 114 (347)
T 2ifg_A 97 -WKTVQGLS-LQELVLSGNP 114 (347)
T ss_dssp -STTTCSCC-CCEEECCSSC
T ss_pred -HHHcccCC-ceEEEeeCCC
Confidence 33 33444 9999998754
No 242
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=97.41 E-value=0.00075 Score=71.22 Aligned_cols=129 Identities=17% Similarity=0.204 Sum_probs=77.8
Q ss_pred CceEEEEEccCCChHHHHHHHHHcCcc------------ccc--------ccceEEEEEeCC----CCCH----------
Q 047321 130 GLDVISLVGLGGIGKTTLAQLAYNNDE------------VKR--------NFEKVIWVCVSN----TFEE---------- 175 (807)
Q Consensus 130 ~~~vi~I~G~gGiGKTtLa~~v~~~~~------------~~~--------~f~~~~wv~~~~----~~~~---------- 175 (807)
.-.+++|+|++|+|||||.+.++.-.. +.. .-..+.+|.-.. ..++
T Consensus 30 ~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~ 109 (353)
T 1oxx_K 30 NGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVPPEDRKIGMVFQTWALYPNLTAFENIAFPLTN 109 (353)
T ss_dssp TTCEEEEECSCHHHHHHHHHHHHTSSCCSEEEEEETTEEEEETTEESSCGGGSCEEEEETTSCCCTTSCHHHHHHGGGTT
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECcccccccCChhhCCEEEEeCCCccCCCCCHHHHHHHHHHH
Confidence 456999999999999999999864211 100 001233332111 0111
Q ss_pred --------HHHHHHHHHHcCCCC------CCCccHHHHHHHHHHHHhCCceEEEEeCCCCC-CccChHHHHHhhcCC--C
Q 047321 176 --------ISVAKAIIEGLGVSA------FGLSEFESLMKQIQEYITGKKIFLVLDDVWDG-DYKKWDPFFSCLKNG--H 238 (807)
Q Consensus 176 --------~~~~~~i~~~l~~~~------~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~-~~~~~~~l~~~l~~~--~ 238 (807)
.+...++++.++... ......+...-.+.+.+-.++-+|+||+.... |...-..+...+... .
T Consensus 110 ~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~LSGGq~QRvalAraL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~ 189 (353)
T 1oxx_K 110 MKMSKEEIRKRVEEVAKILDIHHVLNHFPRELSGAQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSR 189 (353)
T ss_dssp SSCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCGGGHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHh
Confidence 122345566555432 12233444555688889999999999999765 555555566655432 2
Q ss_pred CCcEEEEEcCCHHHHHHhCC
Q 047321 239 HESKILITTHDRSVALQLGS 258 (807)
Q Consensus 239 ~gs~IliTTR~~~v~~~~~~ 258 (807)
.|..||++|++.+.+..++.
T Consensus 190 ~g~tvi~vTHd~~~~~~~ad 209 (353)
T 1oxx_K 190 LGVTLLVVSHDPADIFAIAD 209 (353)
T ss_dssp HCCEEEEEESCHHHHHHHCS
T ss_pred cCCEEEEEeCCHHHHHHhCC
Confidence 36779999999887766543
No 243
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=97.40 E-value=0.00046 Score=69.40 Aligned_cols=60 Identities=17% Similarity=0.164 Sum_probs=40.7
Q ss_pred HHHHHHHHHHHhCCceEEEEeCCCCC-CccChHHHHHhhcCC-CCCcEEEEEcCCHHHHHHh
Q 047321 197 ESLMKQIQEYITGKKIFLVLDDVWDG-DYKKWDPFFSCLKNG-HHESKILITTHDRSVALQL 256 (807)
Q Consensus 197 ~~~~~~l~~~l~~k~~LlVlDdv~~~-~~~~~~~l~~~l~~~-~~gs~IliTTR~~~v~~~~ 256 (807)
+...-.+.+.+-.++-+++||++... |......+...+... ..|..||++|++.+.+..+
T Consensus 148 qkQrv~iAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~~~~~~ 209 (250)
T 2d2e_A 148 EKKRNEILQLLVLEPTYAVLDETDSGLDIDALKVVARGVNAMRGPNFGALVITHYQRILNYI 209 (250)
T ss_dssp HHHHHHHHHHHHHCCSEEEEECGGGTTCHHHHHHHHHHHHHHCSTTCEEEEECSSSGGGGTS
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHh
Confidence 33444577777788889999998665 444445555555432 3477899999997766544
No 244
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=97.39 E-value=0.00081 Score=71.47 Aligned_cols=129 Identities=21% Similarity=0.209 Sum_probs=75.0
Q ss_pred CceEEEEEccCCChHHHHHHHHHcCcccc---ccc------------------ceEEEEEeCC----CCCHH--------
Q 047321 130 GLDVISLVGLGGIGKTTLAQLAYNNDEVK---RNF------------------EKVIWVCVSN----TFEEI-------- 176 (807)
Q Consensus 130 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~---~~f------------------~~~~wv~~~~----~~~~~-------- 176 (807)
.-.+++|+|++|+|||||.+.++.-.... -.| ..+.+|.-.. ..++.
T Consensus 28 ~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~~~~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~ 107 (372)
T 1g29_1 28 DGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGIFVPPKDRDIAMVFQSYALYPHMTVYDNIAFPLK 107 (372)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEEEEEGGGTEECCGGGSSEEEECSCCCCCTTSCHHHHHHHHHH
T ss_pred CCCEEEEECCCCcHHHHHHHHHHcCCCCCccEEEECCEECccccccccCCHhHCCEEEEeCCCccCCCCCHHHHHHHHHH
Confidence 34689999999999999999986421110 001 1122332110 11111
Q ss_pred ----------HHHHHHHHHcCCCC------CCCccHHHHHHHHHHHHhCCceEEEEeCCCCC-CccChHHHHHhhcCC--
Q 047321 177 ----------SVAKAIIEGLGVSA------FGLSEFESLMKQIQEYITGKKIFLVLDDVWDG-DYKKWDPFFSCLKNG-- 237 (807)
Q Consensus 177 ----------~~~~~i~~~l~~~~------~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~-~~~~~~~l~~~l~~~-- 237 (807)
+...++++.++... ......+...-.+.+.+..++-+|+||+.... |...-..+...+...
T Consensus 108 ~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~ 187 (372)
T 1g29_1 108 LRKVPRQEIDQRVREVAELLGLTELLNRKPRELSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQR 187 (372)
T ss_dssp HTTCCHHHHHHHHHHHHHHHTCGGGTTCCGGGSCHHHHHHHHHHHHHHTCCSEEEEECTTTTSCHHHHHHHHHHHHHHHH
T ss_pred HcCCCHHHHHHHHHHHHHHCCCchHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEECCCCccCCHHHHHHHHHHHHHHHH
Confidence 12234455554421 12233444455688888899999999999765 444444455554432
Q ss_pred CCCcEEEEEcCCHHHHHHhCC
Q 047321 238 HHESKILITTHDRSVALQLGS 258 (807)
Q Consensus 238 ~~gs~IliTTR~~~v~~~~~~ 258 (807)
..|..||++|++.+.+..++.
T Consensus 188 ~~g~tvi~vTHd~~~a~~~ad 208 (372)
T 1g29_1 188 QLGVTTIYVTHDQVEAMTMGD 208 (372)
T ss_dssp HHTCEEEEEESCHHHHHHHCS
T ss_pred hcCCEEEEECCCHHHHHHhCC
Confidence 236679999999887766544
No 245
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=97.39 E-value=0.00015 Score=77.02 Aligned_cols=129 Identities=21% Similarity=0.191 Sum_probs=75.7
Q ss_pred CceEEEEEccCCChHHHHHHHHHcCcc------------cc---cccceEEEEEeC----CC---------------CCH
Q 047321 130 GLDVISLVGLGGIGKTTLAQLAYNNDE------------VK---RNFEKVIWVCVS----NT---------------FEE 175 (807)
Q Consensus 130 ~~~vi~I~G~gGiGKTtLa~~v~~~~~------------~~---~~f~~~~wv~~~----~~---------------~~~ 175 (807)
.-.+++|+|++|+|||||.+.++.-.. +. ..-..+.+|.-. .. ...
T Consensus 36 ~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~ 115 (372)
T 1v43_A 36 DGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPKDRNISMVFQSYAVWPHMTVYENIAFPLKIKKFPK 115 (372)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGGGGTEEEEEC------CCCHHHHHHTTCC--CCCH
T ss_pred CCCEEEEECCCCChHHHHHHHHHcCCCCCceEEEECCEECCCCChhhCcEEEEecCcccCCCCCHHHHHHHHHHhcCCCH
Confidence 456999999999999999999864211 00 000112222210 00 011
Q ss_pred ---HHHHHHHHHHcCCCC------CCCccHHHHHHHHHHHHhCCceEEEEeCCCCC-CccChHHHHHhhcCC--CCCcEE
Q 047321 176 ---ISVAKAIIEGLGVSA------FGLSEFESLMKQIQEYITGKKIFLVLDDVWDG-DYKKWDPFFSCLKNG--HHESKI 243 (807)
Q Consensus 176 ---~~~~~~i~~~l~~~~------~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~-~~~~~~~l~~~l~~~--~~gs~I 243 (807)
.+...++++.++... ......+...-.+.+.+-.++-+|+||+.... |...-..+...+... ..|..|
T Consensus 116 ~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tv 195 (372)
T 1v43_A 116 DEIDKRVRWAAELLQIEELLNRYPAQLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTT 195 (372)
T ss_dssp HHHHHHHHHHHHHTTCGGGTTSCTTTCCSSCHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEE
T ss_pred HHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhCCCEE
Confidence 122445566655431 12233344456688888899999999999765 444444455555432 236679
Q ss_pred EEEcCCHHHHHHhCC
Q 047321 244 LITTHDRSVALQLGS 258 (807)
Q Consensus 244 liTTR~~~v~~~~~~ 258 (807)
|++|++.+.+..++.
T Consensus 196 i~vTHd~~~a~~~ad 210 (372)
T 1v43_A 196 IYVTHDQVEAMTMGD 210 (372)
T ss_dssp EEEESCHHHHHHHCS
T ss_pred EEEeCCHHHHHHhCC
Confidence 999999887766544
No 246
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=97.37 E-value=0.00098 Score=73.60 Aligned_cols=97 Identities=14% Similarity=0.025 Sum_probs=60.7
Q ss_pred eEEEEeCCCCCCccChHHHHHhhcCCCCCcEEE-EE---------cC----CHHH-HHHhCCCceEeCCCCChhhHHHHH
Q 047321 212 IFLVLDDVWDGDYKKWDPFFSCLKNGHHESKIL-IT---------TH----DRSV-ALQLGSIDIIPVKELGEGECWLLF 276 (807)
Q Consensus 212 ~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~Il-iT---------TR----~~~v-~~~~~~~~~~~l~~L~~~~~~~Lf 276 (807)
-++++|++..-+.+....+...+...... .+| .| |. ...+ .....-...+.+.+++.++..+++
T Consensus 297 ~VliIDEa~~l~~~a~~aLlk~lEe~~~~-~~il~tn~~~~~i~~~~~~~~~~~l~~~i~sR~~~~~~~~~~~~e~~~iL 375 (456)
T 2c9o_A 297 GVLFVDEVHMLDIECFTYLHRALESSIAP-IVIFASNRGNCVIRGTEDITSPHGIPLDLLDRVMIIRTMLYTPQEMKQII 375 (456)
T ss_dssp CEEEEESGGGCBHHHHHHHHHHTTSTTCC-EEEEEECCSEEECBTTSSCEEETTCCHHHHTTEEEEECCCCCHHHHHHHH
T ss_pred eEEEEechhhcCHHHHHHHHHHhhccCCC-EEEEecCCccccccccccccccccCChhHHhhcceeeCCCCCHHHHHHHH
Confidence 39999999766666677777777665444 344 44 22 1000 011122346799999999999999
Q ss_pred HHHHhccCCccCccchHHHHHHHHHHc-CCCHHHHHHH
Q 047321 277 KQIAFLRRSFEDCEKLEPIGRKIASKC-KGLPLAAKVI 313 (807)
Q Consensus 277 ~~~a~~~~~~~~~~~~~~~~~~I~~~c-~glPLai~~~ 313 (807)
...+-..+. .--.+....|++.+ +|.|..+..+
T Consensus 376 ~~~~~~~~~----~~~~~~~~~i~~~a~~g~~r~a~~l 409 (456)
T 2c9o_A 376 KIRAQTEGI----NISEEALNHLGEIGTKTTLRYSVQL 409 (456)
T ss_dssp HHHHHHHTC----CBCHHHHHHHHHHHHHSCHHHHHHT
T ss_pred HHHHHHhCC----CCCHHHHHHHHHHccCCCHHHHHHH
Confidence 887642221 11244567888888 8888755544
No 247
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=97.36 E-value=0.0036 Score=63.21 Aligned_cols=184 Identities=15% Similarity=0.058 Sum_probs=93.7
Q ss_pred CccccccchHHHHHHHH---hCCCCC---CCCCceEEEEEccCCChHHHHHHHHHcCcccccccceEEEEEeCCCCCHHH
Q 047321 104 GGVCGRVDEKNELLSKL---LCGSSE---QQKGLDVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSNTFEEIS 177 (807)
Q Consensus 104 ~~~vGR~~~~~~l~~~L---~~~~~~---~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~ 177 (807)
.+++|.+..++++.+.+ .....- .....+-+.|+|++|+||||+|+.+++. ....| +.++.+.-.+
T Consensus 12 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~--~~~~~---~~i~~~~~~~--- 83 (257)
T 1lv7_A 12 ADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGE--AKVPF---FTISGSDFVE--- 83 (257)
T ss_dssp GGSCSCHHHHHHTHHHHHHHHCGGGC-----CCCCEEEEECCTTSCHHHHHHHHHHH--HTCCE---EEECSCSSTT---
T ss_pred HHhcCcHHHHHHHHHHHHHHhCHHHHHHcCCCCCCeEEEECcCCCCHHHHHHHHHHH--cCCCE---EEEeHHHHHH---
Confidence 46899987777665543 221100 0112345889999999999999999873 22222 2332221110
Q ss_pred HHHHHHHHcCCCCCCCccHHHHHHHHHHHHhCCceEEEEeCCCCCC----------c----cChHHHHHhhcC--CCCCc
Q 047321 178 VAKAIIEGLGVSAFGLSEFESLMKQIQEYITGKKIFLVLDDVWDGD----------Y----KKWDPFFSCLKN--GHHES 241 (807)
Q Consensus 178 ~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~----------~----~~~~~l~~~l~~--~~~gs 241 (807)
...+ .........+.......+.++++|++..-. . .....+...+.. ...+.
T Consensus 84 -----------~~~~-~~~~~~~~~~~~a~~~~~~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~ 151 (257)
T 1lv7_A 84 -----------MFVG-VGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGI 151 (257)
T ss_dssp -----------SCCC-CCHHHHHHHHHHHHTTCSEEEEETTHHHHTCCCSTTSCCTTCHHHHHHHHHHHHHHTCCSSSCE
T ss_pred -----------Hhhh-hhHHHHHHHHHHHHHcCCeeehhhhhhhhccCCCCCcCCCchHHHHHHHHHHHHhhCcccCCCE
Confidence 0001 112223333344445567899999982210 0 011122222222 12345
Q ss_pred EEEEEcCCHH-HHHHh-C---CCceEeCCCCChhhHHHHHHHHHhccCCccCccchHHHHHHHHHHcCC-CHHHHHH
Q 047321 242 KILITTHDRS-VALQL-G---SIDIIPVKELGEGECWLLFKQIAFLRRSFEDCEKLEPIGRKIASKCKG-LPLAAKV 312 (807)
Q Consensus 242 ~IliTTR~~~-v~~~~-~---~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~~~~I~~~c~g-lPLai~~ 312 (807)
.||.||...+ +...+ . -...+.+...+.++-.+++....-...- ..... ...+++.+.| .+--+..
T Consensus 152 ~vI~~tn~~~~l~~~l~r~~rf~~~i~i~~P~~~~r~~il~~~~~~~~l-~~~~~----~~~la~~~~G~~~~dl~~ 223 (257)
T 1lv7_A 152 IVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVPL-APDID----AAIIARGTPGFSGADLAN 223 (257)
T ss_dssp EEEEEESCTTTSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCB-CTTCC----HHHHHHTCTTCCHHHHHH
T ss_pred EEEEeeCCchhCCHHHcCCCcCCeEEEeCCCCHHHHHHHHHHHHhcCCC-Ccccc----HHHHHHHcCCCCHHHHHH
Confidence 5666666543 21111 1 1246788888888888888766532111 11111 3457778888 6755543
No 248
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=97.36 E-value=2.7e-05 Score=82.99 Aligned_cols=19 Identities=21% Similarity=0.102 Sum_probs=14.8
Q ss_pred ccccccccCcccceeeecc
Q 047321 510 SILPELFNKLACLRALVIR 528 (807)
Q Consensus 510 ~~LP~~i~~L~~L~~LdL~ 528 (807)
..|+.++.++++|+.|.+.
T Consensus 129 ~~L~~s~~~l~~L~~L~l~ 147 (362)
T 2ra8_A 129 DGIVENKEKFAHFEGLFWG 147 (362)
T ss_dssp HHHHTTHHHHTTCSEEEEC
T ss_pred HHHHHhhhhcchhhheeec
Confidence 3567778888999998875
No 249
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.34 E-value=0.0054 Score=66.22 Aligned_cols=179 Identities=15% Similarity=0.118 Sum_probs=96.8
Q ss_pred CccccccchHHHHHHHHhCCCCC-------CCCCceEEEEEccCCChHHHHHHHHHcCcccccccceEEEEEeCCCCCHH
Q 047321 104 GGVCGRVDEKNELLSKLLCGSSE-------QQKGLDVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSNTFEEI 176 (807)
Q Consensus 104 ~~~vGR~~~~~~l~~~L~~~~~~-------~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~ 176 (807)
.++.|-++.+++|.+.+..+-.. +-...+-|.++|++|+|||+||+.+++. ....| +.+..+.-.+
T Consensus 181 ~digGl~~~k~~l~e~v~~pl~~p~~f~~~g~~~prGvLL~GPPGtGKTllAkAiA~e--~~~~~---~~v~~s~l~s-- 253 (437)
T 4b4t_L 181 DGIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAAT--IGANF---IFSPASGIVD-- 253 (437)
T ss_dssp GGGCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHH--HTCEE---EEEEGGGTCC--
T ss_pred hHhCChHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeEEEECCCCCcHHHHHHHHHHH--hCCCE---EEEehhhhcc--
Confidence 35788888888887766321000 0234678999999999999999999983 33222 2333322111
Q ss_pred HHHHHHHHHcCCCCCCCccHHHHHHHHHHHHhCCceEEEEeCCCCC-------Cc---cC----hHHHHHhhcC--CCCC
Q 047321 177 SVAKAIIEGLGVSAFGLSEFESLMKQIQEYITGKKIFLVLDDVWDG-------DY---KK----WDPFFSCLKN--GHHE 240 (807)
Q Consensus 177 ~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~-------~~---~~----~~~l~~~l~~--~~~g 240 (807)
.. .......+.......-...+.+|++|++..- .. .. ...++..+.. ...+
T Consensus 254 ------------k~-~Gese~~ir~~F~~A~~~~P~IifiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~ 320 (437)
T 4b4t_L 254 ------------KY-IGESARIIREMFAYAKEHEPCIIFMDEVDAIGGRRFSEGTSADREIQRTLMELLTQMDGFDNLGQ 320 (437)
T ss_dssp ------------SS-SSHHHHHHHHHHHHHHHSCSEEEEEECCCSSSCCCSSSCCSSTTHHHHHHHHHHHHHHSSSCTTS
T ss_pred ------------cc-chHHHHHHHHHHHHHHhcCCceeeeecccccccccccCCCCcchHHHHHHHHHHHHhhcccCCCC
Confidence 00 1111112222233333568999999999531 00 00 1123333322 2344
Q ss_pred cEEEEEcCCHHHHH-Hh-CC---CceEeCCCCChhhHHHHHHHHHhccCCccCccchHHHHHHHHHHcCCCH
Q 047321 241 SKILITTHDRSVAL-QL-GS---IDIIPVKELGEGECWLLFKQIAFLRRSFEDCEKLEPIGRKIASKCKGLP 307 (807)
Q Consensus 241 s~IliTTR~~~v~~-~~-~~---~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~~~~I~~~c~glP 307 (807)
..||.||-..+... .+ .. ...+.++..+.++-.++|+.+.-.... ....++ ..|++.+.|.-
T Consensus 321 vivI~ATNrp~~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~-~~d~dl----~~lA~~t~G~s 387 (437)
T 4b4t_L 321 TKIIMATNRPDTLDPALLRPGRLDRKVEIPLPNEAGRLEIFKIHTAKVKK-TGEFDF----EAAVKMSDGFN 387 (437)
T ss_dssp SEEEEEESSTTSSCTTTTSTTSEEEEECCCCCCHHHHHHHHHHHHHTSCB-CSCCCH----HHHHHTCCSCC
T ss_pred eEEEEecCCchhhCHHHhCCCccceeeecCCcCHHHHHHHHHHHhcCCCC-CcccCH----HHHHHhCCCCC
Confidence 56777776543221 11 11 346788888888888888766533221 122233 56778887753
No 250
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=97.34 E-value=1.2e-05 Score=86.37 Aligned_cols=35 Identities=20% Similarity=0.235 Sum_probs=16.2
Q ss_pred CCcccEEEEccCCCCCC-----CcccccCCCCccEEeeccC
Q 047321 706 MPRLSSLQIMNCRKLKA-----LPDYLLQTIALQKLSIYSC 741 (807)
Q Consensus 706 l~~L~~L~l~~c~~L~~-----lp~~l~~l~~L~~L~l~~c 741 (807)
.++|++|++++| .++. ++..+...++|++|+|++|
T Consensus 182 ~~~L~~L~Ls~N-~l~~~g~~~L~~~L~~~~~L~~L~Ls~N 221 (372)
T 3un9_A 182 NTSVTHLSLLHT-GLGDEGLELLAAQLDRNRQLQELNVAYN 221 (372)
T ss_dssp CSSCCEEECTTS-SCHHHHHHHHHHHGGGCSCCCEEECCSS
T ss_pred CCCcCEEeCCCC-CCCcHHHHHHHHHHhcCCCcCeEECCCC
Confidence 445555555555 2321 2233344445555555554
No 251
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=97.33 E-value=0.0014 Score=77.67 Aligned_cols=157 Identities=16% Similarity=0.106 Sum_probs=86.3
Q ss_pred CccccccchHHHHHHHHhCCCCCCCCCceEEEEEccCCChHHHHHHHHHcCcc---cc-cccceEEEE-EeCCCCCHHHH
Q 047321 104 GGVCGRVDEKNELLSKLLCGSSEQQKGLDVISLVGLGGIGKTTLAQLAYNNDE---VK-RNFEKVIWV-CVSNTFEEISV 178 (807)
Q Consensus 104 ~~~vGR~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~---~~-~~f~~~~wv-~~~~~~~~~~~ 178 (807)
..++||+++++++++.|... ...-+.|+|++|+|||++|+.++.... +. ......+|. ..+.-
T Consensus 186 d~~iGr~~~i~~l~~~l~~~------~~~~vlL~G~~GtGKT~la~~la~~l~~~~v~~~~~~~~~~~~~~~~l------ 253 (758)
T 1r6b_X 186 DPLIGREKELERAIQVLCRR------RKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGSL------ 253 (758)
T ss_dssp CCCCSCHHHHHHHHHHHTSS------SSCEEEEECCTTSSHHHHHHHHHHHHHHTCSCGGGTTCEEEECCCC--------
T ss_pred CCccCCHHHHHHHHHHHhcc------CCCCeEEEcCCCCCHHHHHHHHHHHHHhCCCChhhcCCEEEEEcHHHH------
Confidence 35899999999999999743 345578999999999999999886211 00 112233321 11110
Q ss_pred HHHHHHHcCCCCCCCccHHHHHHHHHHHH-hCCceEEEEeCCCCCC-----ccChHHHHHhhcCC--CCCcEEEEEcCCH
Q 047321 179 AKAIIEGLGVSAFGLSEFESLMKQIQEYI-TGKKIFLVLDDVWDGD-----YKKWDPFFSCLKNG--HHESKILITTHDR 250 (807)
Q Consensus 179 ~~~i~~~l~~~~~~~~~~~~~~~~l~~~l-~~k~~LlVlDdv~~~~-----~~~~~~l~~~l~~~--~~gs~IliTTR~~ 250 (807)
+... ......+.....+.+.+ ..++.+|++||+..-. ...-......+... ..+.++|.+|...
T Consensus 254 -------~~~~-~~~g~~e~~l~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~~~~~~~~~~L~~~l~~~~~~~I~at~~~ 325 (758)
T 1r6b_X 254 -------LAGT-KYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLSSGKIRVIGSTTYQ 325 (758)
T ss_dssp --------CCC-CCSSCHHHHHHHHHHHHSSSSCEEEEETTTTTTTTSCCSSSCHHHHHHHHSSCSSSCCCEEEEEECHH
T ss_pred -------hccc-cccchHHHHHHHHHHHHHhcCCeEEEEechHHHhhcCCCCcchHHHHHHHHHHHhCCCeEEEEEeCch
Confidence 0001 11123333333333333 3457899999995420 00111222222211 2334566666544
Q ss_pred HHHHHhC-------CCceEeCCCCChhhHHHHHHHHH
Q 047321 251 SVALQLG-------SIDIIPVKELGEGECWLLFKQIA 280 (807)
Q Consensus 251 ~v~~~~~-------~~~~~~l~~L~~~~~~~Lf~~~a 280 (807)
....... -...+.++..+.++..+++...+
T Consensus 326 ~~~~~~~~d~aL~~Rf~~i~v~~p~~~e~~~il~~l~ 362 (758)
T 1r6b_X 326 EFSNIFEKDRALARRFQKIDITEPSIEETVQIINGLK 362 (758)
T ss_dssp HHHCCCCCTTSSGGGEEEEECCCCCHHHHHHHHHHHH
T ss_pred HHhhhhhcCHHHHhCceEEEcCCCCHHHHHHHHHHHH
Confidence 4322111 12368899999999998887654
No 252
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=97.33 E-value=0.00037 Score=82.45 Aligned_cols=156 Identities=15% Similarity=0.214 Sum_probs=87.9
Q ss_pred CccccccchHHHHHHHHhCCCCC---CCCCceEEEEEccCCChHHHHHHHHHcCcccccccceEEEEEeCCCCCHHHHHH
Q 047321 104 GGVCGRVDEKNELLSKLLCGSSE---QQKGLDVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSNTFEEISVAK 180 (807)
Q Consensus 104 ~~~vGR~~~~~~l~~~L~~~~~~---~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~ 180 (807)
..++|.+..++.+...+...... .......+.++|++|+|||++|+.+++. ....-...+.++++...+..
T Consensus 491 ~~viGq~~a~~~l~~~i~~~~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~ala~~--l~~~~~~~i~i~~s~~~~~~---- 564 (758)
T 3pxi_A 491 SRVIGQDEAVVAVAKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTELARALAES--IFGDEESMIRIDMSEYMEKH---- 564 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHTTTCSCTTSCSEEEEEESCTTSSHHHHHHHHHHH--HHSCTTCEEEEEGGGGCSSC----
T ss_pred CcCcChHHHHHHHHHHHHHHHcccCCCCCCceEEEEECCCCCCHHHHHHHHHHH--hcCCCcceEEEechhccccc----
Confidence 46899999888888877543211 0123347999999999999999999873 21111223444443221100
Q ss_pred HHHHHcCCCCCCCccHHHHHHHHHHHHhCCceEEEEeCCCCCCccChHHHHHhhcCCC-----------CCcEEEEEcCC
Q 047321 181 AIIEGLGVSAFGLSEFESLMKQIQEYITGKKIFLVLDDVWDGDYKKWDPFFSCLKNGH-----------HESKILITTHD 249 (807)
Q Consensus 181 ~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~-----------~gs~IliTTR~ 249 (807)
.. ....+...++ ....-+|+||++..........+...+..+. ...+||+||..
T Consensus 565 ----------~~--~~~~l~~~~~---~~~~~vl~lDEi~~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~ttn~ 629 (758)
T 3pxi_A 565 ----------ST--SGGQLTEKVR---RKPYSVVLLDAIEKAHPDVFNILLQVLEDGRLTDSKGRTVDFRNTILIMTSNV 629 (758)
T ss_dssp ----------CC--C---CHHHHH---HCSSSEEEEECGGGSCHHHHHHHHHHHHHSBCC-----CCBCTTCEEEEEESS
T ss_pred ----------cc--ccchhhHHHH---hCCCeEEEEeCccccCHHHHHHHHHHhccCeEEcCCCCEeccCCeEEEEeCCC
Confidence 00 0111111111 2344599999997666666666776665431 34578888872
Q ss_pred -----HHH----HHHh-----CC-CceEeCCCCChhhHHHHHHHHH
Q 047321 250 -----RSV----ALQL-----GS-IDIIPVKELGEGECWLLFKQIA 280 (807)
Q Consensus 250 -----~~v----~~~~-----~~-~~~~~l~~L~~~~~~~Lf~~~a 280 (807)
..+ ...+ .- ...+.+.+++.++...++....
T Consensus 630 ~~~~~~~~~~~~~~~f~p~l~~Rl~~~i~~~~l~~~~~~~i~~~~l 675 (758)
T 3pxi_A 630 GASEKDKVMGELKRAFRPEFINRIDEIIVFHSLEKKHLTEIVSLMS 675 (758)
T ss_dssp STTCCHHHHHHHHHHSCHHHHTTSSEEEECC--CHHHHHHHHHHHH
T ss_pred ChhhHHHHHHHHHhhCCHHHHhhCCeEEecCCCCHHHHHHHHHHHH
Confidence 111 1111 11 2478899999888877776543
No 253
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=97.30 E-value=4.8e-05 Score=71.88 Aligned_cols=127 Identities=13% Similarity=0.082 Sum_probs=64.2
Q ss_pred CceEEEEEccCCChHHHHHHHHHcCccccc--ccceEEEEEeCCCCCHHH---HHHHHHH---HcCCC----C-CCCccH
Q 047321 130 GLDVISLVGLGGIGKTTLAQLAYNNDEVKR--NFEKVIWVCVSNTFEEIS---VAKAIIE---GLGVS----A-FGLSEF 196 (807)
Q Consensus 130 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~--~f~~~~wv~~~~~~~~~~---~~~~i~~---~l~~~----~-~~~~~~ 196 (807)
...+++|+|++|+|||||++.++....+.. .....++-......-... ....... ..+.. . ......
T Consensus 8 ~gei~~l~G~nGsGKSTl~~~~~~~~~~~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~s~g 87 (171)
T 4gp7_A 8 ELSLVVLIGSSGSGKSTFAKKHFKPTEVISSDFCRGLMSDDENDQTVTGAAFDVLHYIVSKRLQLGKLTVVDATNVQESA 87 (171)
T ss_dssp SSEEEEEECCTTSCHHHHHHHHSCGGGEEEHHHHHHHHCSSTTCGGGHHHHHHHHHHHHHHHHHTTCCEEEESCCCSHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHccCCeEEccHHHHHHhcCcccchhhHHHHHHHHHHHHHHHHhCCCeEEEECCCCCHHH
Confidence 457999999999999999997553211100 000000000000000111 1111111 11111 1 111222
Q ss_pred HHHHHHHHHHHhCCceEEEEeCCCCC-Ccc----------------ChHHHHHhhcCC-CCCcEEEEEcCCHHHHHHh
Q 047321 197 ESLMKQIQEYITGKKIFLVLDDVWDG-DYK----------------KWDPFFSCLKNG-HHESKILITTHDRSVALQL 256 (807)
Q Consensus 197 ~~~~~~l~~~l~~k~~LlVlDdv~~~-~~~----------------~~~~l~~~l~~~-~~gs~IliTTR~~~v~~~~ 256 (807)
....-.+.+.+..++-+++||+.... +.. ....+...+... ..|..||++|++.+.+..+
T Consensus 88 ~~qrv~iAral~~~p~~lllDEPt~~Ld~~~~~R~~~~~~~~vi~~~~~~l~~~l~~l~~~g~tvi~vtH~~~~~~~~ 165 (171)
T 4gp7_A 88 RKPLIEMAKDYHCFPVAVVFNLPEKVCQERNKNRTDRQVEEYVIRKHTQQMKKSIKGLQREGFRYVYILNSPEEVEEV 165 (171)
T ss_dssp HHHHHHHHHHTTCEEEEEEECCCHHHHHHHHHTCSSCCCCHHHHHHHHHHHHHHSTTHHHHTCSEEEEECSHHHHHHE
T ss_pred HHHHHHHHHHcCCcEEEEEEeCCHHHHHHHHhcccCCCCCHHHHHHHHHHhhhhhhhHHhcCCcEEEEeCCHHHhhhh
Confidence 33334577778889999999998543 222 234455554432 2366799999998776543
No 254
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=97.30 E-value=0.00044 Score=81.75 Aligned_cols=147 Identities=19% Similarity=0.144 Sum_probs=78.5
Q ss_pred CccccccchHHHHHHHHhCCCCCCCCCceEEEEEccCCChHHHHHHHHHcCcc---cccc-cceE-EEEEeCCCCCHHHH
Q 047321 104 GGVCGRVDEKNELLSKLLCGSSEQQKGLDVISLVGLGGIGKTTLAQLAYNNDE---VKRN-FEKV-IWVCVSNTFEEISV 178 (807)
Q Consensus 104 ~~~vGR~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~---~~~~-f~~~-~wv~~~~~~~~~~~ 178 (807)
..+|||++++++++..|... ...-+.++|++|+|||++|+.+++... +... .... +.++.
T Consensus 180 d~iiG~~~~i~~l~~~l~~~------~~~~vLL~G~pGtGKT~la~~la~~l~~~~~p~~l~~~~~~~~~~--------- 244 (758)
T 3pxi_A 180 DPVIGRSKEIQRVIEVLSRR------TKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDM--------- 244 (758)
T ss_dssp CCCCCCHHHHHHHHHHHHCS------SSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC-----------
T ss_pred CCccCchHHHHHHHHHHhCC------CCCCeEEECCCCCCHHHHHHHHHHHHhcCCCChhhcCCeEEEecc---------
Confidence 35999999999999999753 234478999999999999999886310 0000 0111 11111
Q ss_pred HHHHHHHcCCCCCCCccHHHHHHHHHHHHhCCceEEEEeCCCCCCccChHHHHHhhcCCCCCcEEEEEcCCHHHHHH--h
Q 047321 179 AKAIIEGLGVSAFGLSEFESLMKQIQEYITGKKIFLVLDDVWDGDYKKWDPFFSCLKNGHHESKILITTHDRSVALQ--L 256 (807)
Q Consensus 179 ~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~IliTTR~~~v~~~--~ 256 (807)
+....+.. ...+...+......++.+|++|.. ......+...+. ....++|.||........ .
T Consensus 245 --------g~~~~G~~-e~~l~~~~~~~~~~~~~iLfiD~~----~~~~~~L~~~l~--~~~v~~I~at~~~~~~~~~~~ 309 (758)
T 3pxi_A 245 --------GTKYRGEF-EDRLKKVMDEIRQAGNIILFIDAA----IDASNILKPSLA--RGELQCIGATTLDEYRKYIEK 309 (758)
T ss_dssp -----------------CTTHHHHHHHHHTCCCCEEEECC------------CCCTT--SSSCEEEEECCTTTTHHHHTT
T ss_pred --------cccccchH-HHHHHHHHHHHHhcCCEEEEEcCc----hhHHHHHHHHHh--cCCEEEEeCCChHHHHHHhhc
Confidence 00000000 011222233334467889999921 111122322222 223456666654432111 1
Q ss_pred C-----CCceEeCCCCChhhHHHHHHHHH
Q 047321 257 G-----SIDIIPVKELGEGECWLLFKQIA 280 (807)
Q Consensus 257 ~-----~~~~~~l~~L~~~~~~~Lf~~~a 280 (807)
. -...+.++..+.++..+++....
T Consensus 310 d~al~rRf~~i~v~~p~~~~~~~il~~~~ 338 (758)
T 3pxi_A 310 DAALERRFQPIQVDQPSVDESIQILQGLR 338 (758)
T ss_dssp CSHHHHSEEEEECCCCCHHHHHHHHHHTT
T ss_pred cHHHHhhCcEEEeCCCCHHHHHHHHHHHH
Confidence 1 12468999999999999998654
No 255
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=97.18 E-value=0.0066 Score=66.61 Aligned_cols=179 Identities=14% Similarity=0.051 Sum_probs=96.6
Q ss_pred CccccccchHHHHHHHHhCCCCC------CCCCceEEEEEccCCChHHHHHHHHHcCcccccccceEEEEEeCCCCCHHH
Q 047321 104 GGVCGRVDEKNELLSKLLCGSSE------QQKGLDVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSNTFEEIS 177 (807)
Q Consensus 104 ~~~vGR~~~~~~l~~~L~~~~~~------~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~ 177 (807)
.+++|.++.++++.+.+..-... .....+-|.|+|++|+|||+||+.+++. ....| +.++.+.....
T Consensus 16 ~di~G~~~~~~~l~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~Laraia~~--~~~~f---~~is~~~~~~~-- 88 (476)
T 2ce7_A 16 KDVGGAEEAIEELKEVVEFLKDPSKFNRIGARMPKGILLVGPPGTGKTLLARAVAGE--ANVPF---FHISGSDFVEL-- 88 (476)
T ss_dssp GGCCSCHHHHHHHHHHHHHHHCTHHHHTTTCCCCSEEEEECCTTSSHHHHHHHHHHH--HTCCE---EEEEGGGTTTC--
T ss_pred HHhCCcHHHHHHHHHHHHHhhChHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHH--cCCCe---eeCCHHHHHHH--
Confidence 46899987776666554211000 0112234889999999999999999973 22222 23333222110
Q ss_pred HHHHHHHHcCCCCCCCccHHHHHHHHHHHHhCCceEEEEeCCCCCCc--------------cChHHHHHhhcC--CCCCc
Q 047321 178 VAKAIIEGLGVSAFGLSEFESLMKQIQEYITGKKIFLVLDDVWDGDY--------------KKWDPFFSCLKN--GHHES 241 (807)
Q Consensus 178 ~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~--------------~~~~~l~~~l~~--~~~gs 241 (807)
+ ...........+.....+.+.+|++|++..-.. .....+...+.. ...+.
T Consensus 89 --------~-----~g~~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~~~~~v 155 (476)
T 2ce7_A 89 --------F-----VGVGAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDSKEGI 155 (476)
T ss_dssp --------C-----TTHHHHHHHHHHHHHHHTCSEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHHSCGGGTE
T ss_pred --------H-----hcccHHHHHHHHHHHHhcCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhccCCCCCE
Confidence 0 001122233344555567899999999843211 012223333321 12455
Q ss_pred EEEEEcCCHHHHH-H-hC---CCceEeCCCCChhhHHHHHHHHHhccCCccCccchHHHHHHHHHHcCCCH
Q 047321 242 KILITTHDRSVAL-Q-LG---SIDIIPVKELGEGECWLLFKQIAFLRRSFEDCEKLEPIGRKIASKCKGLP 307 (807)
Q Consensus 242 ~IliTTR~~~v~~-~-~~---~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~~~~I~~~c~glP 307 (807)
.||.||...+... . .. -...+.++..+.++-.+++..++-...- ..... ...|++.+.|..
T Consensus 156 iVIaaTn~~~~Ld~allR~gRFd~~i~i~~Pd~~~R~~Il~~~~~~~~l-~~~v~----l~~la~~t~G~s 221 (476)
T 2ce7_A 156 IVMAATNRPDILDPALLRPGRFDKKIVVDPPDMLGRKKILEIHTRNKPL-AEDVN----LEIIAKRTPGFV 221 (476)
T ss_dssp EEEEEESCGGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCB-CTTCC----HHHHHHTCTTCC
T ss_pred EEEEecCChhhhchhhcccCcceeEeecCCCCHHHHHHHHHHHHHhCCC-cchhh----HHHHHHhcCCCc
Confidence 6777777654321 1 11 1237888888888888888766533211 11112 345788888876
No 256
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.15 E-value=0.0069 Score=65.29 Aligned_cols=177 Identities=17% Similarity=0.068 Sum_probs=95.1
Q ss_pred ccccccchHHHHHHHHhC----CCC---CCCCCceEEEEEccCCChHHHHHHHHHcCcccccccceEEEEEeCCCCCHHH
Q 047321 105 GVCGRVDEKNELLSKLLC----GSS---EQQKGLDVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSNTFEEIS 177 (807)
Q Consensus 105 ~~vGR~~~~~~l~~~L~~----~~~---~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~ 177 (807)
++.|-++.+++|.+.+.. ++. -+-...+-|.++|++|+|||.||+.+++ +....| +.+..+.-.
T Consensus 210 DIgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLAkAiA~--e~~~~f---i~vs~s~L~---- 280 (467)
T 4b4t_H 210 DVGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAVAN--RTDATF---IRVIGSELV---- 280 (467)
T ss_dssp SCTTCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHHHHHHH--HHTCEE---EEEEGGGGC----
T ss_pred HhccHHHHHHHHHHHHHHHhcCHHHHHHCCCCCCCceEeeCCCCCcHHHHHHHHHh--ccCCCe---EEEEhHHhh----
Confidence 578888888888775421 000 0023567889999999999999999998 333332 233322111
Q ss_pred HHHHHHHHcCCCCCCCccHHHHHHHHHHHHhCCceEEEEeCCCCCC------cc----C----hHHHHHhhcCC--CCCc
Q 047321 178 VAKAIIEGLGVSAFGLSEFESLMKQIQEYITGKKIFLVLDDVWDGD------YK----K----WDPFFSCLKNG--HHES 241 (807)
Q Consensus 178 ~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~------~~----~----~~~l~~~l~~~--~~gs 241 (807)
....+ .....+...+...-...+.+|++|++..-- .. . ...++..+... ..+.
T Consensus 281 ----------sk~vG-esek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~V 349 (467)
T 4b4t_H 281 ----------QKYVG-EGARMVRELFEMARTKKACIIFFDEIDAVGGARFDDGAGGDNEVQRTMLELITQLDGFDPRGNI 349 (467)
T ss_dssp ----------CCSSS-HHHHHHHHHHHHHHHTCSEEEEEECCTTTSBCCSSSSCGGGGHHHHHHHHHHHHHHSSCCTTTE
T ss_pred ----------cccCC-HHHHHHHHHHHHHHhcCCceEeecccccccccccCcCCCccHHHHHHHHHHHHHhhccCCCCcE
Confidence 11111 111222223333345679999999985320 00 0 11122222222 2344
Q ss_pred EEEEEcCCHHH---HHH-h-CCCceEeCCCCChhhHHHHHHHHHhccCCccCccchHHHHHHHHHHcCCC
Q 047321 242 KILITTHDRSV---ALQ-L-GSIDIIPVKELGEGECWLLFKQIAFLRRSFEDCEKLEPIGRKIASKCKGL 306 (807)
Q Consensus 242 ~IliTTR~~~v---~~~-~-~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~~~~I~~~c~gl 306 (807)
.||.||-..+. |-. - .-...+.++..+.++-.++|+.+.-.-.. .....+ ..|++.+.|.
T Consensus 350 iVIaATNrpd~LDpALlRpGRFD~~I~i~lPd~~~R~~Ilk~~l~~~~l-~~dvdl----~~LA~~T~Gf 414 (467)
T 4b4t_H 350 KVMFATNRPNTLDPALLRPGRIDRKVEFSLPDLEGRANIFRIHSKSMSV-ERGIRW----ELISRLCPNS 414 (467)
T ss_dssp EEEEECSCTTSBCHHHHSTTTCCEEECCCCCCHHHHHHHHHHHHTTSCB-CSSCCH----HHHHHHCCSC
T ss_pred EEEeCCCCcccCChhhhccccccEEEEeCCcCHHHHHHHHHHHhcCCCC-CCCCCH----HHHHHHCCCC
Confidence 55666654321 111 1 12457888888888888999776633221 122233 5677888775
No 257
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=97.15 E-value=0.0012 Score=65.36 Aligned_cols=116 Identities=19% Similarity=0.040 Sum_probs=64.1
Q ss_pred CceEEEEEccCCChHHHHHHHHHcCcccccccceEEEEEeCCCCCHHHHHHHHHHHcCCCCC------------------
Q 047321 130 GLDVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSNTFEEISVAKAIIEGLGVSAF------------------ 191 (807)
Q Consensus 130 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~------------------ 191 (807)
.-.+++|+|++|+|||||++.++.... ..=..++|+.... ....+...+. .++....
T Consensus 22 ~G~~~~i~G~~GsGKTtl~~~l~~~~~--~~~~~v~~~~~~~--~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (235)
T 2w0m_A 22 QGFFIALTGEPGTGKTIFSLHFIAKGL--RDGDPCIYVTTEE--SRDSIIRQAK-QFNWDFEEYIEKKLIIIDALMKEKE 96 (235)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHHHHH--HHTCCEEEEESSS--CHHHHHHHHH-HTTCCCGGGBTTTEEEEECCC----
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHH--HCCCeEEEEEccc--CHHHHHHHHH-HhcchHHHHhhCCEEEEeccccccC
Confidence 346899999999999999999885221 1112355655433 3444333322 3321100
Q ss_pred -----CCccHHHHHHHHHHHHh-CCce--EEEEeCCCCC---CccChHHHHHhhcCC--CCCcEEEEEcCCH
Q 047321 192 -----GLSEFESLMKQIQEYIT-GKKI--FLVLDDVWDG---DYKKWDPFFSCLKNG--HHESKILITTHDR 250 (807)
Q Consensus 192 -----~~~~~~~~~~~l~~~l~-~k~~--LlVlDdv~~~---~~~~~~~l~~~l~~~--~~gs~IliTTR~~ 250 (807)
...+.+++...+.+.+. .++- ++|+|++... +......+...+... ..|..||+||+..
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~~~~d~~~~~~~~~~l~~~~~~~~~~vi~~~h~~ 168 (235)
T 2w0m_A 97 DQWSLVNLTPEELVNKVIEAKQKLGYGKARLVIDSVSALFLDKPAMARKISYYLKRVLNKWNFTIYATSQYA 168 (235)
T ss_dssp CTTBCSSCCHHHHHHHHHHHHHHHCSSCEEEEEETGGGGSSSCGGGHHHHHHHHHHHHHHTTEEEEEEEC--
T ss_pred ceeeecCCCHHHHHHHHHHHHHhhCCCceEEEEECchHhhcCCHHHHHHHHHHHHHHHHhCCCeEEEEeccC
Confidence 11144555555555443 2444 9999998632 333344444444332 3577899999876
No 258
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=97.10 E-value=0.0023 Score=72.91 Aligned_cols=57 Identities=18% Similarity=0.176 Sum_probs=39.3
Q ss_pred HHHHHHHHHhCCceEEEEeCCCCC-CccChHHHHHhhcCCCCCcEEEEEcCCHHHHHH
Q 047321 199 LMKQIQEYITGKKIFLVLDDVWDG-DYKKWDPFFSCLKNGHHESKILITTHDRSVALQ 255 (807)
Q Consensus 199 ~~~~l~~~l~~k~~LlVlDdv~~~-~~~~~~~l~~~l~~~~~gs~IliTTR~~~v~~~ 255 (807)
..-.+.+.+-.++-+++||++... |...-..+...+.....|..||++|++.+....
T Consensus 487 qr~~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~ 544 (582)
T 3b5x_A 487 QRVAIARALLRDAPVLILDEATSALDTESERAIQAALDELQKNKTVLVIAHRLSTIEQ 544 (582)
T ss_pred HHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHh
Confidence 344467777788899999999765 444444455555544447779999998776653
No 259
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=97.10 E-value=0.0011 Score=66.34 Aligned_cols=120 Identities=16% Similarity=0.153 Sum_probs=65.5
Q ss_pred CceEEEEEccCCChHHHHHHHHHcCccccc----ccceEEEEEeCCCCCHHHHHHHHHHHcCCCC---------CCCccH
Q 047321 130 GLDVISLVGLGGIGKTTLAQLAYNNDEVKR----NFEKVIWVCVSNTFEEISVAKAIIEGLGVSA---------FGLSEF 196 (807)
Q Consensus 130 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~----~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~---------~~~~~~ 196 (807)
.-.++.|+|++|+||||||..++....... .-..++|++....+....+. .+++.++... ....+.
T Consensus 23 ~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~~~-~~~~~~g~~~~~~~~~~~~~~~~~~ 101 (243)
T 1n0w_A 23 TGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLL-AVAERYGLSGSDVLDNVAYARAFNT 101 (243)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHH-HHHHHTTCCHHHHHHTEEEEECCSH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCCCcCHHHHH-HHHHHcCCCHHHHhhCeEEEecCCH
Confidence 457999999999999999999876211111 12468888877765554432 3344443321 011122
Q ss_pred HH---HHHHHHHHHh-CCceEEEEeCCCCCCccC-------------hHHHHHhhcCC--CCCcEEEEEcCCH
Q 047321 197 ES---LMKQIQEYIT-GKKIFLVLDDVWDGDYKK-------------WDPFFSCLKNG--HHESKILITTHDR 250 (807)
Q Consensus 197 ~~---~~~~l~~~l~-~k~~LlVlDdv~~~~~~~-------------~~~l~~~l~~~--~~gs~IliTTR~~ 250 (807)
.+ ....+.+.+. .+.-++|+|++...-... ...+...+... ..|..||+|++..
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~lliiD~~~~~~~~~~~~~~~~~~r~~~~~~~~~~l~~~~~~~~~tvi~~~h~~ 174 (243)
T 1n0w_A 102 DHQTQLLYQASAMMVESRYALLIVDSATALYRTDYSGRGELSARQMHLARFLRMLLRLADEFGVAVVITNQVV 174 (243)
T ss_dssp HHHHHHHHHHHHHHHHSCEEEEEEETSSGGGC-------CHHHHHHHHHHHHHHHHHHHHHHCCEEEEEC---
T ss_pred HHHHHHHHHHHHHHhcCCceEEEEeCchHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHcCCEEEEEeeee
Confidence 22 2333445543 578899999985431111 12222223221 2467899998854
No 260
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=97.07 E-value=0.0018 Score=72.53 Aligned_cols=64 Identities=9% Similarity=0.012 Sum_probs=43.7
Q ss_pred cHHHHHHHHHHHHhCCceEEEEeCCCCC-CccChHHHHHhhcCCCCCcEEEEEcCCHHHHHHhCC
Q 047321 195 EFESLMKQIQEYITGKKIFLVLDDVWDG-DYKKWDPFFSCLKNGHHESKILITTHDRSVALQLGS 258 (807)
Q Consensus 195 ~~~~~~~~l~~~l~~k~~LlVlDdv~~~-~~~~~~~l~~~l~~~~~gs~IliTTR~~~v~~~~~~ 258 (807)
..+...-.|.+.+..++-+|+||++.+. |...-..+...+.....|..||++|++...+..+..
T Consensus 141 gGe~Qrv~iA~aL~~~p~illlDEPts~LD~~~~~~l~~~l~~l~~g~tii~vsHdl~~~~~~~d 205 (538)
T 3ozx_A 141 GGGLQRLLVAASLLREADVYIFDQPSSYLDVRERMNMAKAIRELLKNKYVIVVDHDLIVLDYLTD 205 (538)
T ss_dssp HHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHCTTSEEEEECSCHHHHHHHCS
T ss_pred HHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHhCCCEEEEEEeChHHHHhhCC
Confidence 3444556688888999999999999765 443333444444332236789999999888776654
No 261
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=97.06 E-value=0.00071 Score=69.05 Aligned_cols=60 Identities=20% Similarity=0.208 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHHhCCceEEEEeCCCCC-CccChHHHHHhhcCC-CCCcEE--EEEcCCHHHHHH
Q 047321 196 FESLMKQIQEYITGKKIFLVLDDVWDG-DYKKWDPFFSCLKNG-HHESKI--LITTHDRSVALQ 255 (807)
Q Consensus 196 ~~~~~~~l~~~l~~k~~LlVlDdv~~~-~~~~~~~l~~~l~~~-~~gs~I--liTTR~~~v~~~ 255 (807)
.+...-.+.+.+..++-+|+||++... |...-..+...+... ..|..| |++|++.+.+..
T Consensus 165 GqkqRv~lAraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~g~tv~~iivtHd~~~~~~ 228 (279)
T 2ihy_A 165 GEKQRVMIARALMGQPQVLILDEPAAGLDFIARESLLSILDSLSDSYPTLAMIYVTHFIEEITA 228 (279)
T ss_dssp HHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHHCTTCEEEEEESCGGGCCT
T ss_pred HHHHHHHHHHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHHHCCCEEEEEEEecCHHHHHH
Confidence 344445577888889999999999765 444444455544332 124458 999999765543
No 262
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.04 E-value=0.0038 Score=67.39 Aligned_cols=177 Identities=14% Similarity=0.105 Sum_probs=94.3
Q ss_pred CccccccchHHHHHHHHhC----CCC---CCCCCceEEEEEccCCChHHHHHHHHHcCcccccccceEEEEEeCCCCCHH
Q 047321 104 GGVCGRVDEKNELLSKLLC----GSS---EQQKGLDVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSNTFEEI 176 (807)
Q Consensus 104 ~~~vGR~~~~~~l~~~L~~----~~~---~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~ 176 (807)
.++.|-++.+++|.+.+.. ++. .+-...+-|.++|++|+|||.||+.+++. ....| +.+..+.-.
T Consensus 181 ~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~~prGvLLyGPPGTGKTllAkAiA~e--~~~~f---~~v~~s~l~--- 252 (434)
T 4b4t_M 181 SDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAAQ--TNATF---LKLAAPQLV--- 252 (434)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHH--HTCEE---EEEEGGGGC---
T ss_pred HhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeeEEECcCCCCHHHHHHHHHHH--hCCCE---EEEehhhhh---
Confidence 3578888888888776422 110 00234678899999999999999999983 33222 233322111
Q ss_pred HHHHHHHHHcCCCCCCCccHHHHHHHH-HHHHhCCceEEEEeCCCCC-------Ccc---ChH----HHHHhhcCC--CC
Q 047321 177 SVAKAIIEGLGVSAFGLSEFESLMKQI-QEYITGKKIFLVLDDVWDG-------DYK---KWD----PFFSCLKNG--HH 239 (807)
Q Consensus 177 ~~~~~i~~~l~~~~~~~~~~~~~~~~l-~~~l~~k~~LlVlDdv~~~-------~~~---~~~----~l~~~l~~~--~~ 239 (807)
.... .+.+...+.+ ...-...+.+|++|++..- ... ... .++..+... ..
T Consensus 253 -----------~~~v--Gese~~ir~lF~~A~~~aP~IifiDEiDal~~~R~~~~~~~~~~~~~~~~~lL~~ldg~~~~~ 319 (434)
T 4b4t_M 253 -----------QMYI--GEGAKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKSGDREVQRTMLELLNQLDGFSSDD 319 (434)
T ss_dssp -----------SSCS--SHHHHHHHHHHHHHHHHCSEEEEEECTHHHHCCCSSGGGGTTHHHHHHHHHHHHHHTTSCSSC
T ss_pred -----------hccc--chHHHHHHHHHHHHHhcCCeEEeecchhhhhhccCCCCCCCchHHHHHHHHHHHHhhccCCCC
Confidence 1111 1112222222 2233457899999998320 000 111 223333222 23
Q ss_pred CcEEEEEcCCHHHH-HHh-C---CCceEeCCCCChhhHHHHHHHHHhccCCccCccchHHHHHHHHHHcCCC
Q 047321 240 ESKILITTHDRSVA-LQL-G---SIDIIPVKELGEGECWLLFKQIAFLRRSFEDCEKLEPIGRKIASKCKGL 306 (807)
Q Consensus 240 gs~IliTTR~~~v~-~~~-~---~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~~~~I~~~c~gl 306 (807)
+..||.||...+.. ..+ . -...+.++..+.++-.++|+.+.-.... .....+ ..|++.+.|.
T Consensus 320 ~ViVIaaTNrp~~LD~AllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~-~~dvdl----~~lA~~t~G~ 386 (434)
T 4b4t_M 320 RVKVLAATNRVDVLDPALLRSGRLDRKIEFPLPSEDSRAQILQIHSRKMTT-DDDINW----QELARSTDEF 386 (434)
T ss_dssp SSEEEEECSSCCCCCTTTCSTTSEEEEEECCCCCHHHHHHHHHHHHHHSCB-CSCCCH----HHHHHHCSSC
T ss_pred CEEEEEeCCCchhcCHhHhcCCceeEEEEeCCcCHHHHHHHHHHHhcCCCC-CCcCCH----HHHHHhCCCC
Confidence 44566677554321 111 1 1346888888888888888766533221 122233 6677888774
No 263
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=97.03 E-value=0.002 Score=73.14 Aligned_cols=132 Identities=18% Similarity=0.160 Sum_probs=76.5
Q ss_pred eEEEEEccCCChHHHHHHHHHcCccccc-c-c-c-eEEEEEeC--CCC--CHH--------------HHHHHHHHHcCCC
Q 047321 132 DVISLVGLGGIGKTTLAQLAYNNDEVKR-N-F-E-KVIWVCVS--NTF--EEI--------------SVAKAIIEGLGVS 189 (807)
Q Consensus 132 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~-~-f-~-~~~wv~~~--~~~--~~~--------------~~~~~i~~~l~~~ 189 (807)
.+++|+|++|+|||||++.++.-..... . . . .+.++.-. ..+ ++. .....+++.++..
T Consensus 379 Eiv~iiG~NGsGKSTLlk~l~Gl~~p~~G~~~~~~~i~~~~q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~l~~l~l~ 458 (608)
T 3j16_B 379 EILVMMGENGTGKTTLIKLLAGALKPDEGQDIPKLNVSMKPQKIAPKFPGTVRQLFFKKIRGQFLNPQFQTDVVKPLRID 458 (608)
T ss_dssp CEEEEESCTTSSHHHHHHHHHTSSCCSBCCCCCSCCEEEECSSCCCCCCSBHHHHHHHHCSSTTTSHHHHHHTHHHHTST
T ss_pred eEEEEECCCCCcHHHHHHHHhcCCCCCCCcCccCCcEEEecccccccCCccHHHHHHHHhhcccccHHHHHHHHHHcCCh
Confidence 5799999999999999999976322110 0 0 0 12222110 001 111 2233344444432
Q ss_pred C------CCCccHHHHHHHHHHHHhCCceEEEEeCCCCC-CccChHHHHHhhcCC--CCCcEEEEEcCCHHHHHHhCCCc
Q 047321 190 A------FGLSEFESLMKQIQEYITGKKIFLVLDDVWDG-DYKKWDPFFSCLKNG--HHESKILITTHDRSVALQLGSID 260 (807)
Q Consensus 190 ~------~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~-~~~~~~~l~~~l~~~--~~gs~IliTTR~~~v~~~~~~~~ 260 (807)
. ......+...-.+.+.+..++-+|+||+.... |...-..+...+... ..|..||++|++.+.+..+.. +
T Consensus 459 ~~~~~~~~~LSGGqkQRv~iAraL~~~p~lLlLDEPT~gLD~~~~~~i~~ll~~l~~~~g~tviivtHdl~~~~~~aD-r 537 (608)
T 3j16_B 459 DIIDQEVQHLSGGELQRVAIVLALGIPADIYLIDEPSAYLDSEQRIICSKVIRRFILHNKKTAFIVEHDFIMATYLAD-K 537 (608)
T ss_dssp TTSSSBSSSCCHHHHHHHHHHHHTTSCCSEEEECCTTTTCCHHHHHHHHHHHHHHHHHHTCEEEEECSCHHHHHHHCS-E
T ss_pred hhhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCC-E
Confidence 1 12234444555688889999999999999765 444444444444432 236679999999888776643 3
Q ss_pred eEeC
Q 047321 261 IIPV 264 (807)
Q Consensus 261 ~~~l 264 (807)
++.+
T Consensus 538 vivl 541 (608)
T 3j16_B 538 VIVF 541 (608)
T ss_dssp EEEC
T ss_pred EEEE
Confidence 4433
No 264
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=97.01 E-value=0.0015 Score=69.76 Aligned_cols=60 Identities=13% Similarity=0.140 Sum_probs=41.0
Q ss_pred ccHHHHHHHHHHHHhCCceEEEEeCCCCC-CccChHHHHHhhcCCCCCcEEEEEcCCHHHH
Q 047321 194 SEFESLMKQIQEYITGKKIFLVLDDVWDG-DYKKWDPFFSCLKNGHHESKILITTHDRSVA 253 (807)
Q Consensus 194 ~~~~~~~~~l~~~l~~k~~LlVlDdv~~~-~~~~~~~l~~~l~~~~~gs~IliTTR~~~v~ 253 (807)
...+...-.+.+.+-.++-+|+||+.... |...-..+...+.....+..||++|++.+..
T Consensus 157 SGGqrQRvalARAL~~~P~lLLLDEPts~LD~~~~~~l~~~l~~~~~~~tvi~vtHd~e~~ 217 (390)
T 3gd7_A 157 SHGHKQLMCLARSVLSKAKILLLDEPSAHLDPVTYQIIRRTLKQAFADCTVILCEARIEAM 217 (390)
T ss_dssp CHHHHHHHHHHHHHHTTCCEEEEESHHHHSCHHHHHHHHHHHHTTTTTSCEEEECSSSGGG
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHhCCCEEEEEEcCHHHH
Confidence 34444555688888889999999997543 4444445666665555577799999987544
No 265
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=96.98 E-value=0.0039 Score=70.75 Aligned_cols=80 Identities=19% Similarity=0.023 Sum_probs=51.0
Q ss_pred HHHHHHHcCCCC------CCCccHHHHHHHHHHHHhCCceEEEEeCCCCC-CccChHHHHHhhcCC-CCCcEEEEEcCCH
Q 047321 179 AKAIIEGLGVSA------FGLSEFESLMKQIQEYITGKKIFLVLDDVWDG-DYKKWDPFFSCLKNG-HHESKILITTHDR 250 (807)
Q Consensus 179 ~~~i~~~l~~~~------~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~-~~~~~~~l~~~l~~~-~~gs~IliTTR~~ 250 (807)
..++++.++... ......+...-.+.+.+..++-+++||+..+. |...-..+...+... ..|..||++|++.
T Consensus 202 ~~~~l~~~gl~~~~~~~~~~LSgGe~Qrv~iAraL~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHdl 281 (608)
T 3j16_B 202 VKRYIKILQLENVLKRDIEKLSGGELQRFAIGMSCVQEADVYMFDEPSSYLDVKQRLNAAQIIRSLLAPTKYVICVEHDL 281 (608)
T ss_dssp HHHHHHHHTCTGGGGSCTTTCCHHHHHHHHHHHHHHSCCSEEEEECTTTTCCHHHHHHHHHHHHGGGTTTCEEEEECSCH
T ss_pred HHHHHHHcCCcchhCCChHHCCHHHHHHHHHHHHHHhCCCEEEEECcccCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCH
Confidence 445666665432 22334455556678888888999999999765 444333444444322 3466799999998
Q ss_pred HHHHHhCC
Q 047321 251 SVALQLGS 258 (807)
Q Consensus 251 ~v~~~~~~ 258 (807)
..+..+..
T Consensus 282 ~~~~~~~d 289 (608)
T 3j16_B 282 SVLDYLSD 289 (608)
T ss_dssp HHHHHHCS
T ss_pred HHHHHhCC
Confidence 88776644
No 266
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.97 E-value=0.0085 Score=63.93 Aligned_cols=176 Identities=15% Similarity=0.098 Sum_probs=93.6
Q ss_pred ccccccchHHHHHHHHhCC----CC---CCCCCceEEEEEccCCChHHHHHHHHHcCcccccccceEEEEEeCCCCCHHH
Q 047321 105 GVCGRVDEKNELLSKLLCG----SS---EQQKGLDVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSNTFEEIS 177 (807)
Q Consensus 105 ~~vGR~~~~~~l~~~L~~~----~~---~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~ 177 (807)
++.|-++.+++|.+.+..+ +. -+-...+-|.++|++|+|||.||+++++. ....| +.+..+.-.
T Consensus 183 DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi~~prGvLLyGPPGTGKTlLAkAiA~e--~~~~f---i~v~~s~l~---- 253 (437)
T 4b4t_I 183 DIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQ--TSATF---LRIVGSELI---- 253 (437)
T ss_dssp GTCSCHHHHHHHHHHHHHHHHCCHHHHHHTCCCCSEEEEESSTTTTHHHHHHHHHHH--HTCEE---EEEESGGGC----
T ss_pred ecCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCCCceECCCCchHHHHHHHHHHH--hCCCE---EEEEHHHhh----
Confidence 5778888888887765321 00 00234577999999999999999999983 33332 222221111
Q ss_pred HHHHHHHHcCCCCCCCccHHHHHHHH-HHHHhCCceEEEEeCCCCC--------C--ccChH----HHHHhhcC--CCCC
Q 047321 178 VAKAIIEGLGVSAFGLSEFESLMKQI-QEYITGKKIFLVLDDVWDG--------D--YKKWD----PFFSCLKN--GHHE 240 (807)
Q Consensus 178 ~~~~i~~~l~~~~~~~~~~~~~~~~l-~~~l~~k~~LlVlDdv~~~--------~--~~~~~----~l~~~l~~--~~~g 240 (807)
... ..+.+...+.+ ...-...+.+|++|++..- . ..... .++..+.. ...+
T Consensus 254 ----------sk~--vGesek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~LL~~lDg~~~~~~ 321 (437)
T 4b4t_I 254 ----------QKY--LGDGPRLCRQIFKVAGENAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDDRGD 321 (437)
T ss_dssp ----------CSS--SSHHHHHHHHHHHHHHHTCSEEEEEEEESSSSCCCSCSSCSSCCHHHHHHHHHHHHHHHCCCSSS
T ss_pred ----------hcc--CchHHHHHHHHHHHHHhcCCcEEEEehhhhhcccCCCCCCCccHHHHHHHHHHHHHhhCcCCCCC
Confidence 111 11222223332 2333567999999998531 0 00111 22222221 2334
Q ss_pred cEEEEEcCCHHHHH-Hh-C---CCceEeCCCCChhhHHHHHHHHHhccCCccCccchHHHHHHHHHHcCCC
Q 047321 241 SKILITTHDRSVAL-QL-G---SIDIIPVKELGEGECWLLFKQIAFLRRSFEDCEKLEPIGRKIASKCKGL 306 (807)
Q Consensus 241 s~IliTTR~~~v~~-~~-~---~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~~~~I~~~c~gl 306 (807)
..||.||-..+... .+ . -...+.++.-+.++-.++|..+.-.... ....++ ..|++.+.|.
T Consensus 322 ViVIaATNrpd~LDpALlRpGRfD~~I~v~lPd~~~R~~Il~~~l~~~~l-~~dvdl----~~LA~~T~Gf 387 (437)
T 4b4t_I 322 VKVIMATNKIETLDPALIRPGRIDRKILFENPDLSTKKKILGIHTSKMNL-SEDVNL----ETLVTTKDDL 387 (437)
T ss_dssp EEEEEEESCSTTCCTTSSCTTTEEEEECCCCCCHHHHHHHHHHHHTTSCB-CSCCCH----HHHHHHCCSC
T ss_pred EEEEEeCCChhhcCHHHhcCCceeEEEEcCCcCHHHHHHHHHHHhcCCCC-CCcCCH----HHHHHhCCCC
Confidence 45666665543321 11 1 1235788888888888888776532211 122233 5677788765
No 267
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=96.96 E-value=0.00049 Score=71.54 Aligned_cols=41 Identities=20% Similarity=0.127 Sum_probs=28.5
Q ss_pred chHHHHHHHHhCCCCCCCCCceEEEEEccCCChHHHHHHHHHcC
Q 047321 111 DEKNELLSKLLCGSSEQQKGLDVISLVGLGGIGKTTLAQLAYNN 154 (807)
Q Consensus 111 ~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 154 (807)
..++.+.+++.... ......+.|+|+.|+|||+||..+++.
T Consensus 135 ~~~~~~~~~i~~~~---~~~~~~lll~G~~GtGKT~La~aia~~ 175 (308)
T 2qgz_A 135 EAFSAILDFVEQYP---SAEQKGLYLYGDMGIGKSYLLAAMAHE 175 (308)
T ss_dssp HHHHHHHHHHHHCS---CSSCCEEEEECSTTSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcc---ccCCceEEEECCCCCCHHHHHHHHHHH
Confidence 34445555555322 112467899999999999999999873
No 268
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=96.95 E-value=0.011 Score=63.78 Aligned_cols=80 Identities=15% Similarity=0.198 Sum_probs=53.7
Q ss_pred CCCcccEEEEccCCCCCCCcc-cccCCCCccEEeeccCcccccccccccccCCCCCCCCeeeeccCCCcccCC-ccCCCC
Q 047321 705 IMPRLSSLQIMNCRKLKALPD-YLLQTIALQKLSIYSCDLLEELPILEDRRTTDIPRLSSLAIWYCPKLKVLP-DYLLRT 782 (807)
Q Consensus 705 ~l~~L~~L~l~~c~~L~~lp~-~l~~l~~L~~L~l~~c~~l~~lP~~~~~~~~~l~~L~~L~i~~c~~l~~lP-~~l~~l 782 (807)
.+.+|+.+.+.+ .++.++. .+..+++|+.++|.+ .++.++ ...+.++.+|+.+.+.. .++.++ ..+.+|
T Consensus 295 ~~~~L~~i~l~~--~i~~I~~~aF~~c~~L~~i~lp~--~v~~I~---~~aF~~c~~L~~i~lp~--~l~~I~~~aF~~C 365 (394)
T 4fs7_A 295 GCSSLTEVKLLD--SVKFIGEEAFESCTSLVSIDLPY--LVEEIG---KRSFRGCTSLSNINFPL--SLRKIGANAFQGC 365 (394)
T ss_dssp TCTTCCEEEECT--TCCEECTTTTTTCTTCCEECCCT--TCCEEC---TTTTTTCTTCCEECCCT--TCCEECTTTBTTC
T ss_pred cccccccccccc--ccceechhhhcCCCCCCEEEeCC--cccEEh---HHhccCCCCCCEEEECc--cccEehHHHhhCC
Confidence 445666666643 3555543 356678888888853 355554 24567888899888864 377776 578899
Q ss_pred Ccccccccccc
Q 047321 783 TTLQAGEQDYE 793 (807)
Q Consensus 783 ~~L~~L~l~~~ 793 (807)
++|+.+++..+
T Consensus 366 ~~L~~i~lp~~ 376 (394)
T 4fs7_A 366 INLKKVELPKR 376 (394)
T ss_dssp TTCCEEEEEGG
T ss_pred CCCCEEEECCC
Confidence 99999988665
No 269
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=96.91 E-value=0.0065 Score=71.95 Aligned_cols=123 Identities=16% Similarity=0.165 Sum_probs=77.7
Q ss_pred CceEEEEEccCCChHHHHHHHHHcCcccc-----cccceEEEEEeCCC-------CCH-----------HHHHHHHHHHc
Q 047321 130 GLDVISLVGLGGIGKTTLAQLAYNNDEVK-----RNFEKVIWVCVSNT-------FEE-----------ISVAKAIIEGL 186 (807)
Q Consensus 130 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~-----~~f~~~~wv~~~~~-------~~~-----------~~~~~~i~~~l 186 (807)
.-.+++|+|++|+|||||++.+... .+. ... ...+ +.+. .++ ......+++.+
T Consensus 460 ~Ge~v~LiGpNGsGKSTLLk~LagG-~i~g~~~~~~~-~~~~--v~q~~~~~~~~ltv~e~l~~~~~~~~~~v~~~L~~l 535 (986)
T 2iw3_A 460 RARRYGICGPNGCGKSTLMRAIANG-QVDGFPTQEEC-RTVY--VEHDIDGTHSDTSVLDFVFESGVGTKEAIKDKLIEF 535 (986)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHHT-CSTTCCCTTTS-CEEE--TTCCCCCCCTTSBHHHHHHTTCSSCHHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC-CcCCCccccce-eEEE--EcccccccccCCcHHHHHHHhhcCHHHHHHHHHHHc
Confidence 3468999999999999999999842 111 001 1122 2211 111 22334556666
Q ss_pred CCCC-------CCCccHHHHHHHHHHHHhCCceEEEEeCCCCC-CccChHHHHHhhcCCCCCcEEEEEcCCHHHHHHhCC
Q 047321 187 GVSA-------FGLSEFESLMKQIQEYITGKKIFLVLDDVWDG-DYKKWDPFFSCLKNGHHESKILITTHDRSVALQLGS 258 (807)
Q Consensus 187 ~~~~-------~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~-~~~~~~~l~~~l~~~~~gs~IliTTR~~~v~~~~~~ 258 (807)
+... ......+...-.|.+.+-.++-+|+||+..+. |......+...+.. .|..||++|++......+..
T Consensus 536 gL~~~~~~~~~~~LSGGqkQRvaLArAL~~~P~lLLLDEPTs~LD~~~~~~l~~~L~~--~g~tvIivSHdl~~l~~~ad 613 (986)
T 2iw3_A 536 GFTDEMIAMPISALSGGWKMKLALARAVLRNADILLLDEPTNHLDTVNVAWLVNYLNT--CGITSITISHDSVFLDNVCE 613 (986)
T ss_dssp TCCHHHHHSBGGGCCHHHHHHHHHHHHHHTTCSEEEEESTTTTCCHHHHHHHHHHHHH--SCSEEEEECSCHHHHHHHCS
T ss_pred CCChhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHh--CCCEEEEEECCHHHHHHhCC
Confidence 5521 12234444555678888889999999999775 55555556666665 46789999999887766544
No 270
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=96.91 E-value=0.0018 Score=77.42 Aligned_cols=135 Identities=16% Similarity=0.253 Sum_probs=70.8
Q ss_pred ccccccchHHHHHHHHhCCCC---CCCCCceEEEEEccCCChHHHHHHHHHcCcccccccceEEEEEeCCCCCHHHHHHH
Q 047321 105 GVCGRVDEKNELLSKLLCGSS---EQQKGLDVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSNTFEEISVAKA 181 (807)
Q Consensus 105 ~~vGR~~~~~~l~~~L~~~~~---~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~ 181 (807)
.++|.+..++.+...+..... +.+.....+.|+|+.|+|||++|+.+++. ....-...+.++++...... ..
T Consensus 559 ~viG~~~a~~~l~~~i~~~~~g~~~~~~p~~~vLl~Gp~GtGKT~lA~~la~~--~~~~~~~~i~i~~~~~~~~~-~~-- 633 (854)
T 1qvr_A 559 RVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAAT--LFDTEEAMIRIDMTEYMEKH-AV-- 633 (854)
T ss_dssp HSCSCHHHHHHHHHHHHHHGGGCSCSSSCSEEEEEBSCSSSSHHHHHHHHHHH--HHSSGGGEEEECTTTCCSSG-GG--
T ss_pred ccCCcHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCCHHHHHHHHHHH--hcCCCCcEEEEechhccchh-HH--
Confidence 579999988888777753211 00223468899999999999999999863 21101122344443322110 00
Q ss_pred HHHHcCCCC---CCCccHHHHHHHHHHHHhCCceEEEEeCCCCCCccChHHHHHhhcCCC-----------CCcEEEEEc
Q 047321 182 IIEGLGVSA---FGLSEFESLMKQIQEYITGKKIFLVLDDVWDGDYKKWDPFFSCLKNGH-----------HESKILITT 247 (807)
Q Consensus 182 i~~~l~~~~---~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~-----------~gs~IliTT 247 (807)
..+-+.. .+......+...++ ....-+|+||++...+......+...+..+. .+..||+||
T Consensus 634 --s~l~g~~~~~~G~~~~g~l~~~~~---~~~~~vl~lDEi~~l~~~~~~~Ll~~l~~~~~~~~~g~~vd~~~~iiI~ts 708 (854)
T 1qvr_A 634 --SRLIGAPPGYVGYEEGGQLTEAVR---RRPYSVILFDEIEKAHPDVFNILLQILDDGRLTDSHGRTVDFRNTVIILTS 708 (854)
T ss_dssp --GGC--------------CHHHHHH---HCSSEEEEESSGGGSCHHHHHHHHHHHTTTEECCSSSCCEECTTEEEEEEC
T ss_pred --HHHcCCCCCCcCccccchHHHHHH---hCCCeEEEEecccccCHHHHHHHHHHhccCceECCCCCEeccCCeEEEEec
Confidence 0110000 01111111222221 2334699999996666666666777776542 244477777
Q ss_pred CC
Q 047321 248 HD 249 (807)
Q Consensus 248 R~ 249 (807)
..
T Consensus 709 n~ 710 (854)
T 1qvr_A 709 NL 710 (854)
T ss_dssp CT
T ss_pred Cc
Confidence 64
No 271
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=96.90 E-value=0.0011 Score=66.62 Aligned_cols=120 Identities=15% Similarity=0.104 Sum_probs=60.3
Q ss_pred CceEEEEEccCCChHHHHHHHHHcCcccccccceEEEEEeCCCCCHHHHHHHHHHHcCCC--------------------
Q 047321 130 GLDVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSNTFEEISVAKAIIEGLGVS-------------------- 189 (807)
Q Consensus 130 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~-------------------- 189 (807)
.-.+++|+|++|+|||||++.++..... ..-...+++..... ...+. ...+.++..
T Consensus 29 ~G~~~~l~GpnGsGKSTLl~~i~~~~~~-~~~~~~~~~~~~~~--~~~~~-~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 104 (251)
T 2ehv_A 29 EGTTVLLTGGTGTGKTTFAAQFIYKGAE-EYGEPGVFVTLEER--ARDLR-REMASFGWDFEKYEKEGKIAIVDGVSSVV 104 (251)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHHHHHH-HHCCCEEEEESSSC--HHHHH-HHHHTTTCCHHHHHHTTSEEEEC------
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHH-hCCCeEEEEEccCC--HHHHH-HHHHHcCCChHHHhhcCCEEEEEcccccc
Confidence 4579999999999999999988731110 11123445543322 22221 111222110
Q ss_pred ---------CCCCccHHHHHHHHHHHH-hCCceEEEEeCCCCC-----CccChHH-HHHhhcC-CCCCcEEEEEcCCHHH
Q 047321 190 ---------AFGLSEFESLMKQIQEYI-TGKKIFLVLDDVWDG-----DYKKWDP-FFSCLKN-GHHESKILITTHDRSV 252 (807)
Q Consensus 190 ---------~~~~~~~~~~~~~l~~~l-~~k~~LlVlDdv~~~-----~~~~~~~-l~~~l~~-~~~gs~IliTTR~~~v 252 (807)
.....+.+.....+...+ ..++-++|+|++... +...... +...+.. ...|..||++|++...
T Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~p~~lilDep~~~ld~~~d~~~~~~~l~~l~~~l~~~g~tii~vtH~~~~ 184 (251)
T 2ehv_A 105 GLPSEEKFVLEDRFNVDNFLRYIYRVVKAINAKRLVIDSIPSIALRLEEERKIREVLLKLNTILLEMGVTTILTTEAPDP 184 (251)
T ss_dssp -------------CCHHHHHHHHHHHHHHTTCSEEEEECHHHHHHHSSSGGGHHHHHHHHHHHHHHHCCEEEEEECCC--
T ss_pred ccccccceeccCcccHHHHHHHHHHHHHhhCCCEEEEccHHHHHhhcCCHHHHHHHHHHHHHHHHHCCCeEEEEECCCCC
Confidence 001122344444444444 367889999987321 1122222 3332222 1347789999998665
Q ss_pred H
Q 047321 253 A 253 (807)
Q Consensus 253 ~ 253 (807)
+
T Consensus 185 ~ 185 (251)
T 2ehv_A 185 Q 185 (251)
T ss_dssp -
T ss_pred C
Confidence 5
No 272
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=96.88 E-value=0.0035 Score=74.05 Aligned_cols=135 Identities=16% Similarity=0.252 Sum_probs=72.4
Q ss_pred CccccccchHHHHHHHHhCCCC---CCCCCceEEEEEccCCChHHHHHHHHHcCcccccccceEEEEEeCCCCCHHHHHH
Q 047321 104 GGVCGRVDEKNELLSKLLCGSS---EQQKGLDVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSNTFEEISVAK 180 (807)
Q Consensus 104 ~~~vGR~~~~~~l~~~L~~~~~---~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~ 180 (807)
..++|.++.++.+...+..... ........+.++|++|+|||++|+.+++. .. ...+.++++...+...
T Consensus 458 ~~v~g~~~~~~~l~~~i~~~~~g~~~~~~p~~~~ll~G~~GtGKT~la~~la~~--l~---~~~~~i~~s~~~~~~~--- 529 (758)
T 1r6b_X 458 MLVFGQDKAIEALTEAIKMARAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKA--LG---IELLRFDMSEYMERHT--- 529 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHHTTCSCTTSCSEEEEEECSTTSSHHHHHHHHHHH--HT---CEEEEEEGGGCSSSSC---
T ss_pred hhccCHHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCcHHHHHHHHHHH--hc---CCEEEEechhhcchhh---
Confidence 3588998888888776643211 00223457999999999999999999873 22 1233444443221100
Q ss_pred HHHHHcCCCCCCCccHHHHHHHHHHHH-hCCceEEEEeCCCCCCccChHHHHHhhcCCC-----------CCcEEEEEcC
Q 047321 181 AIIEGLGVSAFGLSEFESLMKQIQEYI-TGKKIFLVLDDVWDGDYKKWDPFFSCLKNGH-----------HESKILITTH 248 (807)
Q Consensus 181 ~i~~~l~~~~~~~~~~~~~~~~l~~~l-~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~-----------~gs~IliTTR 248 (807)
+.+.++ ...+....+. ...+...+ +...-+|+||++..........+...+..+. ....||.||.
T Consensus 530 -~~~l~g-~~~g~~g~~~-~~~l~~~~~~~~~~vl~lDEi~~~~~~~~~~Ll~~le~~~~~~~~g~~~~~~~~~iI~tsN 606 (758)
T 1r6b_X 530 -VSRLIG-APPGYVGFDQ-GGLLTDAVIKHPHAVLLLDEIEKAHPDVFNILLQVMDNGTLTDNNGRKADFRNVVLVMTTN 606 (758)
T ss_dssp -CSSSCC-CCSCSHHHHH-TTHHHHHHHHCSSEEEEEETGGGSCHHHHHHHHHHHHHSEEEETTTEEEECTTEEEEEEEC
T ss_pred -HhhhcC-CCCCCcCccc-cchHHHHHHhCCCcEEEEeCccccCHHHHHHHHHHhcCcEEEcCCCCEEecCCeEEEEecC
Confidence 000011 1111111111 11122222 3456799999997666556666666665431 2345677765
Q ss_pred C
Q 047321 249 D 249 (807)
Q Consensus 249 ~ 249 (807)
.
T Consensus 607 ~ 607 (758)
T 1r6b_X 607 A 607 (758)
T ss_dssp S
T ss_pred c
Confidence 3
No 273
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=96.87 E-value=0.0037 Score=71.07 Aligned_cols=128 Identities=20% Similarity=0.208 Sum_probs=76.5
Q ss_pred ceEEEEEccCCChHHHHHHHHHcCcccc-cc--cc-eEEEEEeCC----CCCHHHHH--------------HHHHHHcCC
Q 047321 131 LDVISLVGLGGIGKTTLAQLAYNNDEVK-RN--FE-KVIWVCVSN----TFEEISVA--------------KAIIEGLGV 188 (807)
Q Consensus 131 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~-~~--f~-~~~wv~~~~----~~~~~~~~--------------~~i~~~l~~ 188 (807)
-.+++|+|++|+|||||++.++.-.... +. +. .+.++.-.. ..++.+.+ .++++.++.
T Consensus 382 Gei~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~~~i~~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~l~~~~l 461 (607)
T 3bk7_A 382 GEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEWDLTVAYKPQYIKAEYEGTVYELLSKIDSSKLNSNFYKTELLKPLGI 461 (607)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHTSSCCSBSCCCCCCCEEEECSSCCCCCSSBHHHHHHHHHHHHHHCHHHHHHTHHHHTC
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEEeeEEEEEecCccCCCCCcHHHHHHhhhccCCCHHHHHHHHHHHcCC
Confidence 4689999999999999999998632211 11 11 233332111 12232221 223444443
Q ss_pred CCC------CCccHHHHHHHHHHHHhCCceEEEEeCCCCC-CccChHHHHHhhcCC--CCCcEEEEEcCCHHHHHHhCC
Q 047321 189 SAF------GLSEFESLMKQIQEYITGKKIFLVLDDVWDG-DYKKWDPFFSCLKNG--HHESKILITTHDRSVALQLGS 258 (807)
Q Consensus 189 ~~~------~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~-~~~~~~~l~~~l~~~--~~gs~IliTTR~~~v~~~~~~ 258 (807)
... .....+...-.+.+.+..++-+|+||+..+. |...-..+...+... ..|..||++|++.+.+..+..
T Consensus 462 ~~~~~~~~~~LSGGe~QRv~iAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vsHd~~~~~~~ad 540 (607)
T 3bk7_A 462 IDLYDRNVEDLSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMIDYVSD 540 (607)
T ss_dssp TTTTTSBGGGCCHHHHHHHHHHHHHTSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCS
T ss_pred chHhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCC
Confidence 321 1233444555688889999999999999765 444444455555432 246679999999888776554
No 274
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=96.86 E-value=0.0012 Score=73.92 Aligned_cols=128 Identities=19% Similarity=0.145 Sum_probs=72.8
Q ss_pred ceEEEEEccCCChHHHHHHHHHcCcccc-cc--cc--eEEEEEeC--C--CCCHHHHHH---------------HHHHHc
Q 047321 131 LDVISLVGLGGIGKTTLAQLAYNNDEVK-RN--FE--KVIWVCVS--N--TFEEISVAK---------------AIIEGL 186 (807)
Q Consensus 131 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~-~~--f~--~~~wv~~~--~--~~~~~~~~~---------------~i~~~l 186 (807)
-.+++|+|++|+|||||++.++.-.... +. +. .+.++.-. . ..++.+.+. ++++.+
T Consensus 294 Gei~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~l~~~ 373 (538)
T 3ozx_A 294 GEIIGILGPNGIGKTTFARILVGEITADEGSVTPEKQILSYKPQRIFPNYDGTVQQYLENASKDALSTSSWFFEEVTKRL 373 (538)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTSSCCSBCCEESSCCCEEEECSSCCCCCSSBHHHHHHHHCSSTTCTTSHHHHHTTTTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCeeeEeechhcccccCCCHHHHHHHhhhhccchhHHHHHHHHHHc
Confidence 4689999999999999999997632211 00 11 12222110 0 112222221 112222
Q ss_pred CCCC------CCCccHHHHHHHHHHHHhCCceEEEEeCCCCC-CccChHHHHHhhcCC--CCCcEEEEEcCCHHHHHHhC
Q 047321 187 GVSA------FGLSEFESLMKQIQEYITGKKIFLVLDDVWDG-DYKKWDPFFSCLKNG--HHESKILITTHDRSVALQLG 257 (807)
Q Consensus 187 ~~~~------~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~-~~~~~~~l~~~l~~~--~~gs~IliTTR~~~v~~~~~ 257 (807)
+... ......+...-.+.+.+..++-+|+||++... |...-..+...+... ..|..||++|++.+.+..++
T Consensus 374 ~l~~~~~~~~~~LSGGq~QRv~iAraL~~~p~lLlLDEPT~gLD~~~~~~i~~~l~~l~~~~g~tvi~vsHdl~~~~~~a 453 (538)
T 3ozx_A 374 NLHRLLESNVNDLSGGELQKLYIAATLAKEADLYVLDQPSSYLDVEERYIVAKAIKRVTRERKAVTFIIDHDLSIHDYIA 453 (538)
T ss_dssp TGGGCTTSBGGGCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHC
T ss_pred CCHHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhC
Confidence 2111 11223344455688889999999999999765 444444455554432 24667999999998877655
Q ss_pred C
Q 047321 258 S 258 (807)
Q Consensus 258 ~ 258 (807)
.
T Consensus 454 D 454 (538)
T 3ozx_A 454 D 454 (538)
T ss_dssp S
T ss_pred C
Confidence 4
No 275
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=96.85 E-value=0.0014 Score=69.04 Aligned_cols=150 Identities=17% Similarity=0.193 Sum_probs=84.9
Q ss_pred CccccccchHHHHHHHHhCCCCCCCCCceEEEEEccCCChHHHHHHHHHcCcccccccceEEEEEeCCCCCHHHHHHHHH
Q 047321 104 GGVCGRVDEKNELLSKLLCGSSEQQKGLDVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSNTFEEISVAKAII 183 (807)
Q Consensus 104 ~~~vGR~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 183 (807)
..++|+++.++.+...+... .-+.++|++|+|||+||+.+.+ .....| ..+.+........+.....
T Consensus 27 ~~i~g~~~~~~~l~~~l~~~--------~~vll~G~pGtGKT~la~~la~--~~~~~~---~~i~~~~~~~~~~l~g~~~ 93 (331)
T 2r44_A 27 KVVVGQKYMINRLLIGICTG--------GHILLEGVPGLAKTLSVNTLAK--TMDLDF---HRIQFTPDLLPSDLIGTMI 93 (331)
T ss_dssp TTCCSCHHHHHHHHHHHHHT--------CCEEEESCCCHHHHHHHHHHHH--HTTCCE---EEEECCTTCCHHHHHEEEE
T ss_pred cceeCcHHHHHHHHHHHHcC--------CeEEEECCCCCcHHHHHHHHHH--HhCCCe---EEEecCCCCChhhcCCcee
Confidence 35899999999998888632 3588999999999999999987 222222 2233333333332211100
Q ss_pred HHcCCCCCCCccHHHHHHHHHHHHhC--CceEEEEeCCCCCCccChHHHHHhhcCC-----------CCCcEEEEEcCCH
Q 047321 184 EGLGVSAFGLSEFESLMKQIQEYITG--KKIFLVLDDVWDGDYKKWDPFFSCLKNG-----------HHESKILITTHDR 250 (807)
Q Consensus 184 ~~l~~~~~~~~~~~~~~~~l~~~l~~--k~~LlVlDdv~~~~~~~~~~l~~~l~~~-----------~~gs~IliTTR~~ 250 (807)
.. ...+... ...+ ...++++|++..........+...+..+ .....|+.|+...
T Consensus 94 --~~-~~~~~~~----------~~~g~l~~~vl~iDEi~~~~~~~~~~Ll~~l~~~~~~~~g~~~~~~~~~~viat~np~ 160 (331)
T 2r44_A 94 --YN-QHKGNFE----------VKKGPVFSNFILADEVNRSPAKVQSALLECMQEKQVTIGDTTYPLDNPFLVLATQNPV 160 (331)
T ss_dssp --EE-TTTTEEE----------EEECTTCSSEEEEETGGGSCHHHHHHHHHHHHHSEEEETTEEEECCSSCEEEEEECTT
T ss_pred --ec-CCCCceE----------eccCcccccEEEEEccccCCHHHHHHHHHHHhcCceeeCCEEEECCCCEEEEEecCCC
Confidence 00 0000000 0001 1358999999665555555555554432 2334455555421
Q ss_pred ----------HHHHHhCCCceEeCCCCChhhHHHHHHHHHh
Q 047321 251 ----------SVALQLGSIDIIPVKELGEGECWLLFKQIAF 281 (807)
Q Consensus 251 ----------~v~~~~~~~~~~~l~~L~~~~~~~Lf~~~a~ 281 (807)
.+...+ ...+.++..+.++-.+++.+.+.
T Consensus 161 ~~~~~~~l~~~l~~Rf--~~~i~i~~p~~~~~~~il~~~~~ 199 (331)
T 2r44_A 161 EQEGTYPLPEAQVDRF--MMKIHLTYLDKESELEVMRRVSN 199 (331)
T ss_dssp CCSCCCCCCHHHHTTS--SEEEECCCCCHHHHHHHHHHHHC
T ss_pred cccCcccCCHHHHhhe--eEEEEcCCCCHHHHHHHHHhccc
Confidence 121111 22588999999999999988764
No 276
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=96.84 E-value=0.00032 Score=71.57 Aligned_cols=157 Identities=14% Similarity=0.046 Sum_probs=80.0
Q ss_pred CccccccchHHHHHHHHhCCCCC------CCCCceEEEEEccCCChHHHHHHHHHcCcccccccceEEEEEeCCCCCHHH
Q 047321 104 GGVCGRVDEKNELLSKLLCGSSE------QQKGLDVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSNTFEEIS 177 (807)
Q Consensus 104 ~~~vGR~~~~~~l~~~L~~~~~~------~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~ 177 (807)
.+++|.++.++.+.+.+..-... .....+-+.|+|++|+|||++|+.+++. ....|- .+..+.-.
T Consensus 11 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~--~~~~~~---~v~~~~~~---- 81 (268)
T 2r62_A 11 KDMAGNEEAKEEVVEIVDFLKYPERYANLGAKIPKGVLLVGPPGTGKTLLAKAVAGE--AHVPFF---SMGGSSFI---- 81 (268)
T ss_dssp TTSSSCTTTHHHHHHHHHHHHCHHHHHHHSCCCCSCCCCBCSSCSSHHHHHHHHHHH--HTCCCC---CCCSCTTT----
T ss_pred HHhCCcHHHHHHHHHHHHHHHChHHHHHCCCCCCceEEEECCCCCcHHHHHHHHHHH--hCCCEE---EechHHHH----
Confidence 56999998888887765410000 0011234789999999999999999873 222221 11111100
Q ss_pred HHHHHHHHcCCCCCCCccHHHHHHHHHHHHhCCceEEEEeCCCCCCc---------------cChHHHHHhhcCC---CC
Q 047321 178 VAKAIIEGLGVSAFGLSEFESLMKQIQEYITGKKIFLVLDDVWDGDY---------------KKWDPFFSCLKNG---HH 239 (807)
Q Consensus 178 ~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~---------------~~~~~l~~~l~~~---~~ 239 (807)
....... .... ...+......++.+|++||+..-.. .....+...+... ..
T Consensus 82 ------~~~~~~~--~~~~---~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~ 150 (268)
T 2r62_A 82 ------EMFVGLG--ASRV---RDLFETAKKQAPSIIFIDEIDAIGKSRAAGGVVSGNDEREQTLNQLLAEMDGFGSENA 150 (268)
T ss_dssp ------TSCSSSC--SSSS---STTHHHHHHSCSCEEEESCGGGTTC----------CCCSCSSTTTTTTTTTCSSCSCS
T ss_pred ------HhhcchH--HHHH---HHHHHHHHhcCCeEEEEeChhhhcccccccccCCCchhHHHHHHHHHHHhhCcccCCC
Confidence 0000000 0011 1112223345678999999943211 1122233333221 12
Q ss_pred CcEEEEEcCCHHHH-HH-hC---CCceEeCCCCChhhHHHHHHHHH
Q 047321 240 ESKILITTHDRSVA-LQ-LG---SIDIIPVKELGEGECWLLFKQIA 280 (807)
Q Consensus 240 gs~IliTTR~~~v~-~~-~~---~~~~~~l~~L~~~~~~~Lf~~~a 280 (807)
...||.||...... .. .. -...+.++..+.++-.+++...+
T Consensus 151 ~v~vi~ttn~~~~ld~~l~r~~Rf~~~i~i~~p~~~~r~~il~~~~ 196 (268)
T 2r62_A 151 PVIVLAATNRPEILDPALMRPGRFDRQVLVDKPDFNGRVEILKVHI 196 (268)
T ss_dssp CCEEEECBSCCTTSCGGGGSSSSSCCCCBCCCCCTTTHHHHHHHHT
T ss_pred CEEEEEecCCchhcCHhHcCCCCCCeEEEecCcCHHHHHHHHHHHH
Confidence 24566666654321 11 11 12467888889999888887665
No 277
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=96.83 E-value=0.0027 Score=71.29 Aligned_cols=128 Identities=20% Similarity=0.191 Sum_probs=75.1
Q ss_pred ceEEEEEccCCChHHHHHHHHHcCcccc-cc--cc-eEEEEEeCC----CCCHHHHHHH--------------HHHHcCC
Q 047321 131 LDVISLVGLGGIGKTTLAQLAYNNDEVK-RN--FE-KVIWVCVSN----TFEEISVAKA--------------IIEGLGV 188 (807)
Q Consensus 131 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~-~~--f~-~~~wv~~~~----~~~~~~~~~~--------------i~~~l~~ 188 (807)
-.+++|+|++|+|||||++.++.-.... +. +. .+.++.-.. ..++.+.+.. +++.++.
T Consensus 312 Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~i~~~~~i~~v~Q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~l~~~~l 391 (538)
T 1yqt_A 312 GEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKIEWDLTVAYKPQYIKADYEGTVYELLSKIDASKLNSNFYKTELLKPLGI 391 (538)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHTSSCCSBCCCCCCCCEEEECSSCCCCCSSBHHHHHHHHHHHHHTCHHHHHHTTTTTTC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECceEEEEecCCcCCCCCcHHHHHHhhhccCCCHHHHHHHHHHHcCC
Confidence 4689999999999999999998632211 11 11 233332111 1233332221 1111221
Q ss_pred CC------CCCccHHHHHHHHHHHHhCCceEEEEeCCCCC-CccChHHHHHhhcCC--CCCcEEEEEcCCHHHHHHhCC
Q 047321 189 SA------FGLSEFESLMKQIQEYITGKKIFLVLDDVWDG-DYKKWDPFFSCLKNG--HHESKILITTHDRSVALQLGS 258 (807)
Q Consensus 189 ~~------~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~-~~~~~~~l~~~l~~~--~~gs~IliTTR~~~v~~~~~~ 258 (807)
.. ......+...-.+.+.+..++-+|+||+..+. |......+...+... ..|..||++|++.+.+..++.
T Consensus 392 ~~~~~~~~~~LSGGe~qrv~lAraL~~~p~lLlLDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vsHd~~~~~~~~d 470 (538)
T 1yqt_A 392 IDLYDREVNELSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMIDYVSD 470 (538)
T ss_dssp GGGTTSBGGGCCHHHHHHHHHHHHHTSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHHTCEEEEECSCHHHHHHHCS
T ss_pred hhhhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCC
Confidence 11 11223444455678889999999999999775 544444555555432 235679999999888776554
No 278
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=96.82 E-value=0.0031 Score=71.87 Aligned_cols=59 Identities=15% Similarity=0.110 Sum_probs=38.7
Q ss_pred HHHHHHHHHHHHhCCceEEEEeCCCCC-CccChHHHHHhhcCCCCCcEEEEEcCCHHHHH
Q 047321 196 FESLMKQIQEYITGKKIFLVLDDVWDG-DYKKWDPFFSCLKNGHHESKILITTHDRSVAL 254 (807)
Q Consensus 196 ~~~~~~~l~~~l~~k~~LlVlDdv~~~-~~~~~~~l~~~l~~~~~gs~IliTTR~~~v~~ 254 (807)
.+...-.+.+.+-.++-+++||++... |...-..+...+.....|..||++|++.+...
T Consensus 484 Gq~qrl~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~ 543 (582)
T 3b60_A 484 GQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLSTIE 543 (582)
T ss_dssp HHHHHHHHHHHHHHCCSEEEEETTTSSCCHHHHHHHHHHHHHHHTTSEEEEECSCGGGTT
T ss_pred HHHHHHHHHHHHHhCCCEEEEECccccCCHHHHHHHHHHHHHHhCCCEEEEEeccHHHHH
Confidence 333344567777778889999999775 44444445555544334677999999876554
No 279
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=96.80 E-value=0.0022 Score=73.30 Aligned_cols=60 Identities=15% Similarity=0.074 Sum_probs=39.8
Q ss_pred HHHHHHHHHHHHhCCceEEEEeCCCCC-CccChHHHHHhhcCCCCCcEEEEEcCCHHHHHH
Q 047321 196 FESLMKQIQEYITGKKIFLVLDDVWDG-DYKKWDPFFSCLKNGHHESKILITTHDRSVALQ 255 (807)
Q Consensus 196 ~~~~~~~l~~~l~~k~~LlVlDdv~~~-~~~~~~~l~~~l~~~~~gs~IliTTR~~~v~~~ 255 (807)
.+...-.+.+.+-.++-+++||++... |...-..+...+.....|..||++|++......
T Consensus 487 Gq~qrv~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~ 547 (595)
T 2yl4_A 487 GQKQRIAIARALLKNPKILLLDEATSALDAENEYLVQEALDRLMDGRTVLVIAHRLSTIKN 547 (595)
T ss_dssp HHHHHHHHHHHHHHCCSEEEEECCCSSCCHHHHHHHHHHHHHHHTTSEEEEECCCHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCEEEEECcccCCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHc
Confidence 333444577777778889999999765 444444455555443336679999999877654
No 280
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=96.80 E-value=0.0038 Score=64.52 Aligned_cols=117 Identities=20% Similarity=0.162 Sum_probs=62.7
Q ss_pred CceEEEEEccCCChHHHHHHHHHcCcccccccc-eEEEEEeCCCCCHHHHHHHHHHH-----------------------
Q 047321 130 GLDVISLVGLGGIGKTTLAQLAYNNDEVKRNFE-KVIWVCVSNTFEEISVAKAIIEG----------------------- 185 (807)
Q Consensus 130 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~-~~~wv~~~~~~~~~~~~~~i~~~----------------------- 185 (807)
.-.+++|+|++|+|||||++.++...... -. .++|+.... ...++.+.+...
T Consensus 34 ~G~~~~i~G~~G~GKTTl~~~ia~~~~~~--~G~~v~~~~~e~--~~~~~~~r~~~~~~~~~~~~~~~l~~~~~~~~~~~ 109 (296)
T 1cr0_A 34 GGEVIMVTSGSGMGKSTFVRQQALQWGTA--MGKKVGLAMLEE--SVEETAEDLIGLHNRVRLRQSDSLKREIIENGKFD 109 (296)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHHHHHHHT--SCCCEEEEESSS--CHHHHHHHHHHHHTTCCGGGCHHHHHHHHHHTHHH
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHHHH--cCCeEEEEeCcC--CHHHHHHHHHHHHcCCChhhccccccCCCCHHHHH
Confidence 45699999999999999999987632211 11 355555332 222222221111
Q ss_pred -----c-CC-----CCC-CCccHHHHHHHHHHH-HhCCceEEEEeCCCC---C----Cc-cChHHHHHhhcCC--CCCcE
Q 047321 186 -----L-GV-----SAF-GLSEFESLMKQIQEY-ITGKKIFLVLDDVWD---G----DY-KKWDPFFSCLKNG--HHESK 242 (807)
Q Consensus 186 -----l-~~-----~~~-~~~~~~~~~~~l~~~-l~~k~~LlVlDdv~~---~----~~-~~~~~l~~~l~~~--~~gs~ 242 (807)
+ .. ... ......++...++.. +..++-+||+|.+.. . +. .....+...+... ..|..
T Consensus 110 ~~~~~~l~~~~l~i~~~~~~~~~~~l~~~~~a~~~~~~p~llilDept~~~~~~~~~d~~~~~~~i~~~L~~la~~~~~~ 189 (296)
T 1cr0_A 110 QWFDELFGNDTFHLYDSFAEAETDRLLAKLAYMRSGLGCDVIILDHISIVVSASGESDERKMIDNLMTKLKGFAKSTGVV 189 (296)
T ss_dssp HHHHHHHSSSCEEEECCCCSCCHHHHHHHHHHHHHTTCCSEEEEEEEC-----------CHHHHHHHHHHHHHHHHHCCE
T ss_pred HHHHHHhccCCEEEECCCCCCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCCCCCCCHHHHHHHHHHHHHHHHHHhCCe
Confidence 1 00 011 223455555555432 456788999999865 1 11 2223344444332 23678
Q ss_pred EEEEcCCH
Q 047321 243 ILITTHDR 250 (807)
Q Consensus 243 IliTTR~~ 250 (807)
||++|+..
T Consensus 190 vi~vsh~~ 197 (296)
T 1cr0_A 190 LVVICHLK 197 (296)
T ss_dssp EEEEEECC
T ss_pred EEEEEecC
Confidence 99999874
No 281
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=96.76 E-value=0.015 Score=59.74 Aligned_cols=25 Identities=24% Similarity=0.336 Sum_probs=22.1
Q ss_pred CCceEEEEEccCCChHHHHHHHHHc
Q 047321 129 KGLDVISLVGLGGIGKTTLAQLAYN 153 (807)
Q Consensus 129 ~~~~vi~I~G~gGiGKTtLa~~v~~ 153 (807)
...+.+.++|++|+|||+||+.+++
T Consensus 34 ~~p~~lLl~GppGtGKT~la~aiA~ 58 (293)
T 3t15_A 34 KVPLILGIWGGKGQGKSFQCELVFR 58 (293)
T ss_dssp CCCSEEEEEECTTSCHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3456888999999999999999997
No 282
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=96.74 E-value=0.0033 Score=70.81 Aligned_cols=50 Identities=24% Similarity=0.259 Sum_probs=34.6
Q ss_pred CccccccchHHHHHHHHhCCCCCCCCCceEEEEEccCCChHHHHHHHHHc
Q 047321 104 GGVCGRVDEKNELLSKLLCGSSEQQKGLDVISLVGLGGIGKTTLAQLAYN 153 (807)
Q Consensus 104 ~~~vGR~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 153 (807)
.+++|-++..+.+.+.+.-..-.......++.|+|++|+||||||+.++.
T Consensus 81 ~di~G~~~vk~~i~~~~~l~~~~~~~~g~~vll~Gp~GtGKTtlar~ia~ 130 (543)
T 3m6a_A 81 EEHHGLEKVKERILEYLAVQKLTKSLKGPILCLAGPPGVGKTSLAKSIAK 130 (543)
T ss_dssp HHCSSCHHHHHHHHHHHHHHHHSSSCCSCEEEEESSSSSSHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHHHHhcccCCCCEEEEECCCCCCHHHHHHHHHH
Confidence 45788877777765543211000022456899999999999999999987
No 283
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=96.72 E-value=0.002 Score=73.70 Aligned_cols=57 Identities=14% Similarity=0.122 Sum_probs=37.7
Q ss_pred HHHHHHHHHhCCceEEEEeCCCCC-CccChHHHHHhhcCCCCCcEEEEEcCCHHHHHH
Q 047321 199 LMKQIQEYITGKKIFLVLDDVWDG-DYKKWDPFFSCLKNGHHESKILITTHDRSVALQ 255 (807)
Q Consensus 199 ~~~~l~~~l~~k~~LlVlDdv~~~-~~~~~~~l~~~l~~~~~gs~IliTTR~~~v~~~ 255 (807)
..-.+.+.+-.++-+++||++... |...-..+...+.....|..+|++||+.+....
T Consensus 498 Qrv~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~ 555 (598)
T 3qf4_B 498 QLLAITRAFLANPKILILDEATSNVDTKTEKSIQAAMWKLMEGKTSIIIAHRLNTIKN 555 (598)
T ss_dssp HHHHHHHHHHTCCSEEEECCCCTTCCHHHHHHHHHHHHHHHTTSEEEEESCCTTHHHH
T ss_pred HHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHc
Confidence 344567777778888999999765 433333444444433346788999998776654
No 284
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=96.71 E-value=0.0057 Score=69.62 Aligned_cols=60 Identities=22% Similarity=0.145 Sum_probs=40.6
Q ss_pred cHHHHHHHHHHHHhCCceEEEEeCCCCC-CccChHHHHHhhcCCCCCcEEEEEcCCHHHHH
Q 047321 195 EFESLMKQIQEYITGKKIFLVLDDVWDG-DYKKWDPFFSCLKNGHHESKILITTHDRSVAL 254 (807)
Q Consensus 195 ~~~~~~~~l~~~l~~k~~LlVlDdv~~~-~~~~~~~l~~~l~~~~~gs~IliTTR~~~v~~ 254 (807)
..+...-.+.+.+-.++-+++||++... |...-..+...+.....|..+|++|++.....
T Consensus 482 gGqrQrv~lARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~ 542 (587)
T 3qf4_A 482 GGQKQRLSIARALVKKPKVLILDDCTSSVDPITEKRILDGLKRYTKGCTTFIITQKIPTAL 542 (587)
T ss_dssp HHHHHHHHHHHHHHTCCSEEEEESCCTTSCHHHHHHHHHHHHHHSTTCEEEEEESCHHHHT
T ss_pred HHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHhCCCCEEEEEecChHHHH
Confidence 3344445577778788889999999765 44444445555544345778999999887764
No 285
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=96.66 E-value=0.0024 Score=72.72 Aligned_cols=59 Identities=17% Similarity=0.120 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHHhCCceEEEEeCCCCC-CccChHHHHHhhcCCCCCcEEEEEcCCHHHHH
Q 047321 196 FESLMKQIQEYITGKKIFLVLDDVWDG-DYKKWDPFFSCLKNGHHESKILITTHDRSVAL 254 (807)
Q Consensus 196 ~~~~~~~l~~~l~~k~~LlVlDdv~~~-~~~~~~~l~~~l~~~~~gs~IliTTR~~~v~~ 254 (807)
.+...-.+.+.+-.++-+++||++.+. |...-..+...+.....|..+|++|++.+...
T Consensus 481 Gq~Qrv~lAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~ 540 (578)
T 4a82_A 481 GQKQRLSIARIFLNNPPILILDEATSALDLESESIIQEALDVLSKDRTTLIVAHRLSTIT 540 (578)
T ss_dssp HHHHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHHHTTTSEEEEECSSGGGTT
T ss_pred HHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHH
Confidence 334444577777778889999999765 44333345555543344567888899876654
No 286
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=96.63 E-value=0.0049 Score=65.17 Aligned_cols=121 Identities=19% Similarity=0.251 Sum_probs=67.4
Q ss_pred CCceEEEEEccCCChHHHHHHHHHcCccccccc----ceEEEEEeCCCCCHHHHHHHHHHHcCCCC------------CC
Q 047321 129 KGLDVISLVGLGGIGKTTLAQLAYNNDEVKRNF----EKVIWVCVSNTFEEISVAKAIIEGLGVSA------------FG 192 (807)
Q Consensus 129 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f----~~~~wv~~~~~~~~~~~~~~i~~~l~~~~------------~~ 192 (807)
..-+++.|+|++|+|||||+..++......... ..++|++....+....+ ..++...+... ..
T Consensus 129 ~~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~~~~~~i-~~i~q~~~~~~~~v~~ni~~~~~~~ 207 (349)
T 1pzn_A 129 ETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRPERI-REIAQNRGLDPDEVLKHIYVARAFN 207 (349)
T ss_dssp ESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSCCCHHHH-HHHHHTTTCCHHHHGGGEEEEECCS
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCCCCHHHH-HHHHHHcCCCHHHHhhCEEEEecCC
Confidence 356899999999999999999987632111111 23588887666544333 23444332210 00
Q ss_pred CccHHHHHHHHHHHHh------CCceEEEEeCCCCC-Ccc-----C-------hHHHHHhhcCC--CCCcEEEEEcCCH
Q 047321 193 LSEFESLMKQIQEYIT------GKKIFLVLDDVWDG-DYK-----K-------WDPFFSCLKNG--HHESKILITTHDR 250 (807)
Q Consensus 193 ~~~~~~~~~~l~~~l~------~k~~LlVlDdv~~~-~~~-----~-------~~~l~~~l~~~--~~gs~IliTTR~~ 250 (807)
.....++...+...+. .+.-+||+|.+... +.. . ...+...+... ..|..||+|++..
T Consensus 208 ~~~~~~~l~~~~~~~~~lS~G~~~~~llIlDs~ta~ld~~~~~~~~~~~r~~~~~~~l~~L~~la~~~~~tvii~~h~~ 286 (349)
T 1pzn_A 208 SNHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLTSHFRSEYIGRGALAERQQKLAKHLADLHRLANLYDIAVFVTNQVQ 286 (349)
T ss_dssp HHHHHHHHHHHHHHHHHSSSSSSCEEEEEEETSSTTHHHHCCSTTTHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEECC
T ss_pred hHHHHHHHHHHHHHHHHhccccCCCCEEEEeCchHhhhhhhcccccHHHHHHHHHHHHHHHHHHHHHcCcEEEEEcccc
Confidence 1112333444555554 57889999999653 110 0 12233333221 2467899998854
No 287
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=96.63 E-value=7.7e-05 Score=80.10 Aligned_cols=119 Identities=15% Similarity=0.136 Sum_probs=74.9
Q ss_pred cCcccccccccCCCccccchhhhccccCC-CCCCcccEEEEccCCCCCC-----CcccccCCCCccEEeeccCccccccc
Q 047321 675 AFPKLKSLEIDGMKELEEWNYRITRKENI-SIMPRLSSLQIMNCRKLKA-----LPDYLLQTIALQKLSIYSCDLLEELP 748 (807)
Q Consensus 675 ~l~~L~~L~l~~~~~l~~~~~~~~~~~~~-~~l~~L~~L~l~~c~~L~~-----lp~~l~~l~~L~~L~l~~c~~l~~lP 748 (807)
.+++|+.|+|++| .+.......- ...+ ...++|+.|++++| .++. ++..+...++|++|+|++|. ++...
T Consensus 124 ~L~~L~~L~Ls~n-~l~~~~~~~L-~~~L~~~~~~L~~L~Ls~n-~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~-l~~~g 199 (372)
T 3un9_A 124 VFLRARKLGLQLN-SLGPEACKDL-RDLLLHDQCQITTLRLSNN-PLTAAGVAVLMEGLAGNTSVTHLSLLHTG-LGDEG 199 (372)
T ss_dssp HHHTEEEEECCSS-CCCHHHHHHH-HHHHHSTTCCCCEEECCSS-CCHHHHHHHHHHHHHTCSSCCEEECTTSS-CHHHH
T ss_pred HHHhccHhhcCCC-CCCHHHHHHH-HHHHHhcCCccceeeCCCC-CCChHHHHHHHHHHhcCCCcCEEeCCCCC-CCcHH
Confidence 4667888888876 4433222000 0001 24578999999988 5543 45555678889999998875 44321
Q ss_pred c-cccccCCCCCCCCeeeeccCCCcc-----cCCccCCCCCcccccccccchhhhh
Q 047321 749 I-LEDRRTTDIPRLSSLAIWYCPKLK-----VLPDYLLRTTTLQAGEQDYENEKFS 798 (807)
Q Consensus 749 ~-~~~~~~~~l~~L~~L~i~~c~~l~-----~lP~~l~~l~~L~~L~l~~~~~~~~ 798 (807)
. .-...+...++|+.|++++|. ++ .++..+...++|+.|++++|++.-.
T Consensus 200 ~~~L~~~L~~~~~L~~L~Ls~N~-i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~~ 254 (372)
T 3un9_A 200 LELLAAQLDRNRQLQELNVAYNG-AGDTAALALARAAREHPSLELLHLYFNELSSE 254 (372)
T ss_dssp HHHHHHHGGGCSCCCEEECCSSC-CCHHHHHHHHHHHHHCSSCCEEECTTSSCCHH
T ss_pred HHHHHHHHhcCCCcCeEECCCCC-CCHHHHHHHHHHHHhCCCCCEEeccCCCCCHH
Confidence 0 000344566789999999865 43 3445566678899999999987543
No 288
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=96.62 E-value=0.0038 Score=70.04 Aligned_cols=79 Identities=16% Similarity=0.167 Sum_probs=50.2
Q ss_pred HHHHHHcCCCCC------CCccHHHHHHHHHHHHhCCceEEEEeCCCCC-CccChHHHHHhhcCC-CCCcEEEEEcCCHH
Q 047321 180 KAIIEGLGVSAF------GLSEFESLMKQIQEYITGKKIFLVLDDVWDG-DYKKWDPFFSCLKNG-HHESKILITTHDRS 251 (807)
Q Consensus 180 ~~i~~~l~~~~~------~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~-~~~~~~~l~~~l~~~-~~gs~IliTTR~~~ 251 (807)
.++++.++.... .....+...-.|.+.+..++-+|+||++.+. |...-..+...+... ..|..||++|++..
T Consensus 140 ~~~l~~lgl~~~~~~~~~~LSgGekQRv~iAraL~~~P~lLlLDEPTs~LD~~~~~~l~~~L~~l~~~g~tvi~vsHd~~ 219 (538)
T 1yqt_A 140 EEVVKALELENVLEREIQHLSGGELQRVAIAAALLRNATFYFFDEPSSYLDIRQRLNAARAIRRLSEEGKSVLVVEHDLA 219 (538)
T ss_dssp HHHHHHTTCTTTTTSBGGGCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHH
T ss_pred HHHHHHcCCChhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH
Confidence 456666665421 1233455556688888999999999999765 444333344443321 23677999999988
Q ss_pred HHHHhCC
Q 047321 252 VALQLGS 258 (807)
Q Consensus 252 v~~~~~~ 258 (807)
.+..+..
T Consensus 220 ~~~~~~d 226 (538)
T 1yqt_A 220 VLDYLSD 226 (538)
T ss_dssp HHHHHCS
T ss_pred HHHHhCC
Confidence 7766544
No 289
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=96.59 E-value=0.0068 Score=59.80 Aligned_cols=47 Identities=28% Similarity=0.287 Sum_probs=31.9
Q ss_pred CceEEEEEccCCChHHHHHHHHHcCcccc---c-ccceEEEEEeCCCCCHH
Q 047321 130 GLDVISLVGLGGIGKTTLAQLAYNNDEVK---R-NFEKVIWVCVSNTFEEI 176 (807)
Q Consensus 130 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~---~-~f~~~~wv~~~~~~~~~ 176 (807)
.-.+++|+|++|+|||||++.++...... . .-...+|+.-...+...
T Consensus 24 ~G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~~~~~~ 74 (231)
T 4a74_A 24 TQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRPE 74 (231)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCCCCCHH
Confidence 56799999999999999999987521111 1 12357787765544443
No 290
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=96.56 E-value=0.0012 Score=67.66 Aligned_cols=70 Identities=17% Similarity=0.274 Sum_probs=45.9
Q ss_pred CceEEEEEccCCChHHHHHHHHHcCcccccccceEEEEEe--CCCCCHHHHHHHHHHHcCCCCCCCccHHHHHHHHHHHH
Q 047321 130 GLDVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCV--SNTFEEISVAKAIIEGLGVSAFGLSEFESLMKQIQEYI 207 (807)
Q Consensus 130 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~--~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l 207 (807)
..+++.|+|++|+||||||..++.. . -..++|+++ ....+ .. . .+.+.....+.+.+
T Consensus 122 ~gsviLI~GpPGsGKTtLAlqlA~~---~--G~~VlyIs~~~eE~v~-------------~~--~-~~le~~l~~i~~~l 180 (331)
T 2vhj_A 122 ASGMVIVTGKGNSGKTPLVHALGEA---L--GGKDKYATVRFGEPLS-------------GY--N-TDFNVFVDDIARAM 180 (331)
T ss_dssp ESEEEEEECSCSSSHHHHHHHHHHH---H--HTTSCCEEEEBSCSST-------------TC--B-CCHHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHh---C--CCCEEEEEecchhhhh-------------hh--h-cCHHHHHHHHHHHH
Confidence 3467889999999999999998863 1 112456665 22211 00 0 34566666667777
Q ss_pred hCCceEEEEeCCCC
Q 047321 208 TGKKIFLVLDDVWD 221 (807)
Q Consensus 208 ~~k~~LlVlDdv~~ 221 (807)
...+ +||+|++..
T Consensus 181 ~~~~-LLVIDsI~a 193 (331)
T 2vhj_A 181 LQHR-VIVIDSLKN 193 (331)
T ss_dssp HHCS-EEEEECCTT
T ss_pred hhCC-EEEEecccc
Confidence 6666 999999954
No 291
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=96.56 E-value=0.011 Score=63.28 Aligned_cols=23 Identities=39% Similarity=0.410 Sum_probs=20.7
Q ss_pred ceEEEEEccCCChHHHHHHHHHc
Q 047321 131 LDVISLVGLGGIGKTTLAQLAYN 153 (807)
Q Consensus 131 ~~vi~I~G~gGiGKTtLa~~v~~ 153 (807)
...+.++|++|+|||++|+.+++
T Consensus 72 ~~~ill~Gp~GtGKT~la~~la~ 94 (376)
T 1um8_A 72 KSNILLIGPTGSGKTLMAQTLAK 94 (376)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHH
T ss_pred CCCEEEECCCCCCHHHHHHHHHH
Confidence 35688999999999999999987
No 292
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=96.55 E-value=0.059 Score=56.74 Aligned_cols=158 Identities=9% Similarity=-0.019 Sum_probs=101.8
Q ss_pred CceEEEEEccCCChHHHHHHHHHcCcccccccceEEEEEeCCCCCHHHHHHHHHHHcCCCCCCCccHHHHHHHHHHH-Hh
Q 047321 130 GLDVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSNTFEEISVAKAIIEGLGVSAFGLSEFESLMKQIQEY-IT 208 (807)
Q Consensus 130 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~-l~ 208 (807)
-.+++.++|+.|.||++.|+.+..... ...|+....+.+....+ ..++.+.+... +-
T Consensus 17 ~~~~yl~~G~e~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~---------------------~~~l~~~~~~~plf 74 (343)
T 1jr3_D 17 LRAAYLLLGNDPLLLQESQDAVRQVAA-AQGFEEHHTFSIDPNTD---------------------WNAIFSLCQAMSLF 74 (343)
T ss_dssp CCSEEEEEESCHHHHHHHHHHHHHHHH-HHTCCEEEEEECCTTCC---------------------HHHHHHHHHHHHHC
T ss_pred CCcEEEEECCcHHHHHHHHHHHHHHHH-hCCCCeeEEEEecCCCC---------------------HHHHHHHhcCcCCc
Confidence 457999999999999999988876211 12343221222222222 33333333222 34
Q ss_pred CCceEEEEeCCCC-CCccChHHHHHhhcCCCCCcEEEEEcCC-------HHHHHHhC-CCceEeCCCCChhhHHHHHHHH
Q 047321 209 GKKIFLVLDDVWD-GDYKKWDPFFSCLKNGHHESKILITTHD-------RSVALQLG-SIDIIPVKELGEGECWLLFKQI 279 (807)
Q Consensus 209 ~k~~LlVlDdv~~-~~~~~~~~l~~~l~~~~~gs~IliTTR~-------~~v~~~~~-~~~~~~l~~L~~~~~~~Lf~~~ 279 (807)
+.+-++|+|++.. -....++.+...+....+++.+|++|.. ..+...+. ....++..+++.++....+.+.
T Consensus 75 ~~~kvvii~~~~~kl~~~~~~aLl~~le~p~~~~~~il~~~~~~~~~~~~k~~~~i~sr~~~~~~~~l~~~~l~~~l~~~ 154 (343)
T 1jr3_D 75 ASRQTLLLLLPENGPNAAINEQLLTLTGLLHDDLLLIVRGNKLSKAQENAAWFTALANRSVQVTCQTPEQAQLPRWVAAR 154 (343)
T ss_dssp CSCEEEEEECCSSCCCTTHHHHHHHHHTTCBTTEEEEEEESCCCTTTTTSHHHHHHTTTCEEEEECCCCTTHHHHHHHHH
T ss_pred cCCeEEEEECCCCCCChHHHHHHHHHHhcCCCCeEEEEEcCCCChhhHhhHHHHHHHhCceEEEeeCCCHHHHHHHHHHH
Confidence 6788899999965 4445677788888766667777766643 23444433 3568899999999999888887
Q ss_pred HhccCCccCccchHHHHHHHHHHcCCCHHHHHHH
Q 047321 280 AFLRRSFEDCEKLEPIGRKIASKCKGLPLAAKVI 313 (807)
Q Consensus 280 a~~~~~~~~~~~~~~~~~~I~~~c~glPLai~~~ 313 (807)
+-..+- .--.+.+..+++.++|...++...
T Consensus 155 ~~~~g~----~i~~~a~~~l~~~~~gdl~~~~~e 184 (343)
T 1jr3_D 155 AKQLNL----ELDDAANQVLCYCYEGNLLALAQA 184 (343)
T ss_dssp HHHTTC----EECHHHHHHHHHSSTTCHHHHHHH
T ss_pred HHHcCC----CCCHHHHHHHHHHhchHHHHHHHH
Confidence 643332 122456788999999998877653
No 293
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=96.47 E-value=0.0051 Score=69.88 Aligned_cols=79 Identities=18% Similarity=0.177 Sum_probs=49.9
Q ss_pred HHHHHHcCCCCC------CCccHHHHHHHHHHHHhCCceEEEEeCCCCC-CccChHHHHHhhcCC-CCCcEEEEEcCCHH
Q 047321 180 KAIIEGLGVSAF------GLSEFESLMKQIQEYITGKKIFLVLDDVWDG-DYKKWDPFFSCLKNG-HHESKILITTHDRS 251 (807)
Q Consensus 180 ~~i~~~l~~~~~------~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~-~~~~~~~l~~~l~~~-~~gs~IliTTR~~~ 251 (807)
.++++.++.... .....+...-.|.+.+..++-+|+||++.+. |...-..+...+... ..|..||++|++..
T Consensus 210 ~~~L~~lgL~~~~~~~~~~LSGGekQRvaIAraL~~~P~lLlLDEPTs~LD~~~~~~l~~~L~~l~~~g~tvIivsHdl~ 289 (607)
T 3bk7_A 210 EEVVKELELENVLDRELHQLSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLANEGKAVLVVEHDLA 289 (607)
T ss_dssp HHHHHHTTCTTGGGSBGGGCCHHHHHHHHHHHHHHSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHH
T ss_pred HHHHHHcCCCchhCCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEecChH
Confidence 445666654321 1233445556688888899999999999765 443333344443321 23678999999988
Q ss_pred HHHHhCC
Q 047321 252 VALQLGS 258 (807)
Q Consensus 252 v~~~~~~ 258 (807)
.+..+..
T Consensus 290 ~~~~~ad 296 (607)
T 3bk7_A 290 VLDYLSD 296 (607)
T ss_dssp HHHHHCS
T ss_pred HHHhhCC
Confidence 8766543
No 294
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=96.47 E-value=0.00042 Score=66.22 Aligned_cols=122 Identities=16% Similarity=0.162 Sum_probs=82.3
Q ss_pred ccCcccccccccCCCccccchhhhccccCCCCCCcccEEEEccCCCCCC-----CcccccCCCCccEEeeccCccccc--
Q 047321 674 IAFPKLKSLEIDGMKELEEWNYRITRKENISIMPRLSSLQIMNCRKLKA-----LPDYLLQTIALQKLSIYSCDLLEE-- 746 (807)
Q Consensus 674 ~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~-----lp~~l~~l~~L~~L~l~~c~~l~~-- 746 (807)
...++|+.|+|++|..+..-... .....+...++|++|++++| .+.. +...+...++|++|+|++|. ++.
T Consensus 33 ~~~~~L~~L~L~~n~~i~~~g~~-~l~~~L~~~~~L~~L~Ls~n-~i~~~g~~~l~~~L~~n~~L~~L~L~~N~-i~~~g 109 (185)
T 1io0_A 33 NNDPDLEEVNLNNIMNIPVPTLK-ACAEALKTNTYVKKFSIVGT-RSNDPVAFALAEMLKVNNTLKSLNVESNF-ISGSG 109 (185)
T ss_dssp TTCTTCCEEECTTCTTCCHHHHH-HHHHHHTTCCSCCEEECTTS-CCCHHHHHHHHHHHHHCSSCCEEECCSSC-CCHHH
T ss_pred hcCCCCCEEEecCCCCCCHHHHH-HHHHHHHhCCCcCEEECcCC-CCChHHHHHHHHHHHhCCCcCEEECcCCc-CCHHH
Confidence 35788999999987455432210 00112345789999999999 4542 34455567899999999974 443
Q ss_pred ---ccccccccCCCCCCCCeeee--ccCCCccc-----CCccCCCCCcccccccccchhhhhhhhhh
Q 047321 747 ---LPILEDRRTTDIPRLSSLAI--WYCPKLKV-----LPDYLLRTTTLQAGEQDYENEKFSQRIAK 803 (807)
Q Consensus 747 ---lP~~~~~~~~~l~~L~~L~i--~~c~~l~~-----lP~~l~~l~~L~~L~l~~~~~~~~~~~~~ 803 (807)
+. ..+...++|++|++ ++ +.++. +...+...++|+.|++++|.+.-...+++
T Consensus 110 ~~~l~----~~L~~n~~L~~L~L~~~~-N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~~~~~i~~ 171 (185)
T 1io0_A 110 ILALV----EALQSNTSLIELRIDNQS-QPLGNNVEMEIANMLEKNTTLLKFGYHFTQQGPRLRASN 171 (185)
T ss_dssp HHHHH----HGGGGCSSCCEEECCCCS-SCCCHHHHHHHHHHHHHCSSCCEEECCCSSHHHHHHHHH
T ss_pred HHHHH----HHHHhCCCceEEEecCCC-CCCCHHHHHHHHHHHHhCCCcCEEeccCCCCChHHHHHH
Confidence 22 34566788999999 54 44542 45566777899999999999865543443
No 295
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=96.40 E-value=0.0059 Score=61.55 Aligned_cols=112 Identities=13% Similarity=0.161 Sum_probs=59.4
Q ss_pred CceEEEEEccCCChHHHHHHHHHcCcccccccceEEEEEeCC-CCCHHHHHHHHHHHcCCCCCCCccHHHHHHHHHHHHh
Q 047321 130 GLDVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSN-TFEEISVAKAIIEGLGVSAFGLSEFESLMKQIQEYIT 208 (807)
Q Consensus 130 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~-~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 208 (807)
...+++|+|++|+|||||++.+..- ....+...+++.-.. .+-.... ..+ +.....+... ..+...+++.+.
T Consensus 24 ~g~~v~i~Gp~GsGKSTll~~l~g~--~~~~~~G~I~~~g~~i~~~~~~~-~~~---v~q~~~gl~~-~~l~~~la~aL~ 96 (261)
T 2eyu_A 24 KMGLILVTGPTGSGKSTTIASMIDY--INQTKSYHIITIEDPIEYVFKHK-KSI---VNQREVGEDT-KSFADALRAALR 96 (261)
T ss_dssp SSEEEEEECSTTCSHHHHHHHHHHH--HHHHCCCEEEEEESSCCSCCCCS-SSE---EEEEEBTTTB-SCHHHHHHHHHH
T ss_pred CCCEEEEECCCCccHHHHHHHHHHh--CCCCCCCEEEEcCCcceeecCCc-cee---eeHHHhCCCH-HHHHHHHHHHHh
Confidence 4579999999999999999998752 211113333322110 0000000 000 0000000000 123456777777
Q ss_pred CCceEEEEeCCCCCCccChHHHHHhhcCCCCCcEEEEEcCCHHHH
Q 047321 209 GKKIFLVLDDVWDGDYKKWDPFFSCLKNGHHESKILITTHDRSVA 253 (807)
Q Consensus 209 ~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~IliTTR~~~v~ 253 (807)
.++-+|++|++. |.+....+.... ..|..|++||++.++.
T Consensus 97 ~~p~illlDEp~--D~~~~~~~l~~~---~~g~~vl~t~H~~~~~ 136 (261)
T 2eyu_A 97 EDPDVIFVGEMR--DLETVETALRAA---ETGHLVFGTLHTNTAI 136 (261)
T ss_dssp HCCSEEEESCCC--SHHHHHHHHHHH---HTTCEEEEEECCSSHH
T ss_pred hCCCEEEeCCCC--CHHHHHHHHHHH---ccCCEEEEEeCcchHH
Confidence 788899999996 333333332222 2466799999987654
No 296
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=96.38 E-value=0.0024 Score=62.52 Aligned_cols=113 Identities=13% Similarity=-0.017 Sum_probs=59.8
Q ss_pred CceEEEEEccCCChHHHHHHHHHcCcccccccceEEEEEeCCCCCHHHHHHHHHHHcCCCCC--CCccHHHHHHHHHHHH
Q 047321 130 GLDVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSNTFEEISVAKAIIEGLGVSAF--GLSEFESLMKQIQEYI 207 (807)
Q Consensus 130 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~--~~~~~~~~~~~l~~~l 207 (807)
...++.|+|+.|+||||++..+... ...+-..++.+...... . ....|+..++.... ......++...+.+.+
T Consensus 11 ~G~i~litG~mGsGKTT~ll~~~~r--~~~~g~kVli~~~~~d~--r-~~~~i~srlG~~~~~~~~~~~~~i~~~i~~~~ 85 (223)
T 2b8t_A 11 IGWIEFITGPMFAGKTAELIRRLHR--LEYADVKYLVFKPKIDT--R-SIRNIQSRTGTSLPSVEVESAPEILNYIMSNS 85 (223)
T ss_dssp CCEEEEEECSTTSCHHHHHHHHHHH--HHHTTCCEEEEEECCCG--G-GCSSCCCCCCCSSCCEEESSTHHHHHHHHSTT
T ss_pred CcEEEEEECCCCCcHHHHHHHHHHH--HHhcCCEEEEEEeccCc--h-HHHHHHHhcCCCccccccCCHHHHHHHHHHHh
Confidence 4579999999999999999777652 22222223333322221 1 11233444443211 1122334444444433
Q ss_pred hCC-ceEEEEeCCCCCCccChHHHHHhhcCCCCCcEEEEEcCCH
Q 047321 208 TGK-KIFLVLDDVWDGDYKKWDPFFSCLKNGHHESKILITTHDR 250 (807)
Q Consensus 208 ~~k-~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~IliTTR~~ 250 (807)
.+. .-+||+|++..-+.+..+.+ ..+.+ .|..||+|.++.
T Consensus 86 ~~~~~dvViIDEaQ~l~~~~ve~l-~~L~~--~gi~Vil~Gl~~ 126 (223)
T 2b8t_A 86 FNDETKVIGIDEVQFFDDRICEVA-NILAE--NGFVVIISGLDK 126 (223)
T ss_dssp SCTTCCEEEECSGGGSCTHHHHHH-HHHHH--TTCEEEEECCSB
T ss_pred hCCCCCEEEEecCccCcHHHHHHH-HHHHh--CCCeEEEEeccc
Confidence 333 45999999954333333333 33333 267899998854
No 297
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=96.37 E-value=0.034 Score=56.49 Aligned_cols=155 Identities=17% Similarity=0.114 Sum_probs=79.1
Q ss_pred CccccccchHHHHHHHHhCCCC--------CCCCCceEEEEEccCCChHHHHHHHHHcCcccccccceEEEEEeCCCCCH
Q 047321 104 GGVCGRVDEKNELLSKLLCGSS--------EQQKGLDVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSNTFEE 175 (807)
Q Consensus 104 ~~~vGR~~~~~~l~~~L~~~~~--------~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~ 175 (807)
.++.|-++.+++|.+.+..+-. +-..... +.|+|++|+||||||+.++.. ... ..+++....-.+.
T Consensus 10 ~di~g~~~~~~~l~~~i~~~~~~~~~l~~~~l~~~~G-vlL~Gp~GtGKTtLakala~~--~~~---~~i~i~g~~l~~~ 83 (274)
T 2x8a_A 10 ADIGALEDIREELTMAILAPVRNPDQFKALGLVTPAG-VLLAGPPGCGKTLLAKAVANE--SGL---NFISVKGPELLNM 83 (274)
T ss_dssp --CCHHHHHHHHHHHHHTHHHHSHHHHHHTTCCCCSE-EEEESSTTSCHHHHHHHHHHH--TTC---EEEEEETTTTCSS
T ss_pred HHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCCe-EEEECCCCCcHHHHHHHHHHH--cCC---CEEEEEcHHHHhh
Confidence 3466766666666554321000 0011122 999999999999999999873 221 2334432211100
Q ss_pred HHHHHHHHHHcCCCCCCCccHHHHHHHHHHH-HhCCceEEEEeCCCCCCc-----------cChHHHHHhhcCC--CCCc
Q 047321 176 ISVAKAIIEGLGVSAFGLSEFESLMKQIQEY-ITGKKIFLVLDDVWDGDY-----------KKWDPFFSCLKNG--HHES 241 (807)
Q Consensus 176 ~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~-l~~k~~LlVlDdv~~~~~-----------~~~~~l~~~l~~~--~~gs 241 (807)
...+.+.....+.+. -...+.++++|++..... .....+...+..+ ....
T Consensus 84 ----------------~~~~~~~~i~~vf~~a~~~~p~i~~~Deid~~~~~r~~~~~~~~~~~~~~~l~~Lsgg~~~~~~ 147 (274)
T 2x8a_A 84 ----------------YVGESERAVRQVFQRAKNSAPCVIFFDEVDALCPRRSDRETGASVRVVNQLLTEMDGLEARQQV 147 (274)
T ss_dssp ----------------TTHHHHHHHHHHHHHHHHTCSEEEEEETCTTTCC---------CTTHHHHHHHHHHTCCSTTCE
T ss_pred ----------------hhhHHHHHHHHHHHHHHhcCCCeEeeehhhhhhcccCCCcchHHHHHHHHHHHhhhcccccCCE
Confidence 000111122222222 245688999999854210 0112233333332 2334
Q ss_pred EEEEEcCCHHHHHH--h---CCCceEeCCCCChhhHHHHHHHHH
Q 047321 242 KILITTHDRSVALQ--L---GSIDIIPVKELGEGECWLLFKQIA 280 (807)
Q Consensus 242 ~IliTTR~~~v~~~--~---~~~~~~~l~~L~~~~~~~Lf~~~a 280 (807)
-++.+|...++... . .-...+.++..+.++-.++|+...
T Consensus 148 i~ia~tn~p~~LD~al~r~gRfd~~i~~~~P~~~~r~~il~~~~ 191 (274)
T 2x8a_A 148 FIMAATNRPDIIDPAILRPGRLDKTLFVGLPPPADRLAILKTIT 191 (274)
T ss_dssp EEEEEESCGGGSCHHHHSTTSSCEEEECCSCCHHHHHHHHHHHT
T ss_pred EEEeecCChhhCCHhhcCcccCCeEEEeCCcCHHHHHHHHHHHH
Confidence 45666766543211 1 124577889889988889988765
No 298
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=96.36 E-value=0.01 Score=70.39 Aligned_cols=61 Identities=18% Similarity=0.152 Sum_probs=43.3
Q ss_pred cHHHHHHHHHHHHhCCceEEEEeCCCCC-CccChHHHHHhhcCCCCCcEEEEEcCCHHHHHHhC
Q 047321 195 EFESLMKQIQEYITGKKIFLVLDDVWDG-DYKKWDPFFSCLKNGHHESKILITTHDRSVALQLG 257 (807)
Q Consensus 195 ~~~~~~~~l~~~l~~k~~LlVlDdv~~~-~~~~~~~l~~~l~~~~~gs~IliTTR~~~v~~~~~ 257 (807)
..+...-.|.+.+..++-+||||+..+. |......+...+... |..||++|++.+.+..+.
T Consensus 904 GGQkQRVaLArAL~~~P~LLLLDEPT~gLD~~s~~~L~~~L~~~--g~tVIiISHD~e~v~~l~ 965 (986)
T 2iw3_A 904 GGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGALSKALKEF--EGGVIIITHSAEFTKNLT 965 (986)
T ss_dssp HHHHHHHHHHHHHTTCCSEEEEECGGGTCCHHHHHHHHHHHHSC--SSEEEEECSCHHHHTTTC
T ss_pred HHHHHHHHHHHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHh--CCEEEEEECCHHHHHHhC
Confidence 3344455577888899999999999765 555555666666654 336999999988765543
No 299
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=96.31 E-value=0.0064 Score=71.84 Aligned_cols=157 Identities=12% Similarity=0.039 Sum_probs=85.1
Q ss_pred CccccccchHHHHHHHHhCC----C---CCCCCCceEEEEEccCCChHHHHHHHHHcCcccccccceEEEEEeCCCCCHH
Q 047321 104 GGVCGRVDEKNELLSKLLCG----S---SEQQKGLDVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSNTFEEI 176 (807)
Q Consensus 104 ~~~vGR~~~~~~l~~~L~~~----~---~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~ 176 (807)
.+++|.++.+++|.+++... . .-.-.....|.|+|++|+||||||+.++.. ....| +.++..
T Consensus 204 ~di~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLarala~~--l~~~~---i~v~~~------ 272 (806)
T 1ypw_A 204 DDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANE--TGAFF---FLINGP------ 272 (806)
T ss_dssp GGCCSCSGGGGHHHHHHHHHHHCGGGGTSSCCCCCCEEEECSCTTSSHHHHHHHHHHT--TTCEE---EEEEHH------
T ss_pred HHhCChHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHH--cCCcE---EEEEch------
Confidence 46899999999888877430 0 000124567999999999999999999873 22222 333311
Q ss_pred HHHHHHHHHcCCCCCCCccHHHHHHHHHHHHhCCceEEEEeCCCCCC------cc-----ChHHHHHhhcCC--CCCcEE
Q 047321 177 SVAKAIIEGLGVSAFGLSEFESLMKQIQEYITGKKIFLVLDDVWDGD------YK-----KWDPFFSCLKNG--HHESKI 243 (807)
Q Consensus 177 ~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~------~~-----~~~~l~~~l~~~--~~gs~I 243 (807)
. +.... .......+...++......+.++++|++.... .. ....+...+... ..+..+
T Consensus 273 ~--------l~~~~-~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~Ll~ll~g~~~~~~v~v 343 (806)
T 1ypw_A 273 E--------IMSKL-AGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIV 343 (806)
T ss_dssp H--------HSSSS-TTHHHHHHHHHHHHHHHHCSEEEEEESGGGTSCTTSCCCSHHHHHHHHHHHHHHHSSCTTSCCEE
T ss_pred H--------hhhhh-hhhHHHHHHHHHHHHHhcCCcEEEeccHHHhhhccccccchHHHHHHHHHHHHhhhhcccccEEE
Confidence 0 10010 01111222333344445578899999983210 00 112233333221 233456
Q ss_pred EEEcCCHHHH-HHhC---C-CceEeCCCCChhhHHHHHHHHH
Q 047321 244 LITTHDRSVA-LQLG---S-IDIIPVKELGEGECWLLFKQIA 280 (807)
Q Consensus 244 liTTR~~~v~-~~~~---~-~~~~~l~~L~~~~~~~Lf~~~a 280 (807)
|.||...... ..+. . ...+.+...+.++-.+++...+
T Consensus 344 I~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~~ 385 (806)
T 1ypw_A 344 MAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHT 385 (806)
T ss_dssp EEECSCTTTSCTTTTSTTSSCEEECCCCCCHHHHHHHHHHTT
T ss_pred ecccCCchhcCHHHhcccccccccccCCCCHHHHHHHHHHHH
Confidence 6666654211 1111 1 2357788888888888887654
No 300
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=96.28 E-value=0.029 Score=57.60 Aligned_cols=87 Identities=16% Similarity=0.109 Sum_probs=45.4
Q ss_pred CceEEEEEccCCChHHHHHHHHHcCcccccccceEEEEEeCCC-CCHHHHHHHHHHHcCCCCCCCccHHHHHHHHHHHHh
Q 047321 130 GLDVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSNT-FEEISVAKAIIEGLGVSAFGLSEFESLMKQIQEYIT 208 (807)
Q Consensus 130 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~-~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 208 (807)
...+++|+|++|+||||++..++......... .+..+..... ....+.+....+..+.......+...+...+.. +
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~-~V~lv~~D~~r~~a~eqL~~~~~~~gl~~~~~~~~~~l~~al~~-~- 180 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAKLAAISMLEKHK-KIAFITTDTYRIAAVEQLKTYAELLQAPLEVCYTKEEFQQAKEL-F- 180 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHHHHHTTCC-CEEEEECCCSSTTHHHHHHHHHTTTTCCCCBCSSHHHHHHHHHH-G-
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCC-EEEEEecCcccchHHHHHHHHHHhcCCCeEecCCHHHHHHHHHH-h-
Confidence 45799999999999999999887522211111 2344443221 222223333333333322112233344444443 2
Q ss_pred CCceEEEEeCC
Q 047321 209 GKKIFLVLDDV 219 (807)
Q Consensus 209 ~k~~LlVlDdv 219 (807)
.+.-++|+|-.
T Consensus 181 ~~~dlvIiDT~ 191 (296)
T 2px0_A 181 SEYDHVFVDTA 191 (296)
T ss_dssp GGSSEEEEECC
T ss_pred cCCCEEEEeCC
Confidence 45568889954
No 301
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=96.26 E-value=0.042 Score=63.94 Aligned_cols=179 Identities=12% Similarity=0.042 Sum_probs=95.0
Q ss_pred CccccccchHHHHHHHHhC----CCC---CCCCCceEEEEEccCCChHHHHHHHHHcCcccccccceEEEEEeCCCCCHH
Q 047321 104 GGVCGRVDEKNELLSKLLC----GSS---EQQKGLDVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSNTFEEI 176 (807)
Q Consensus 104 ~~~vGR~~~~~~l~~~L~~----~~~---~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~ 176 (807)
.++.|-++.+++|.+.+.- +.. -+....+-|.++|++|+|||+||+.+++. ...+| +.|+.+
T Consensus 204 ~dIgGl~~~~~~l~e~v~~pl~~p~~f~~~g~~~p~GILL~GPPGTGKT~LAraiA~e--lg~~~---~~v~~~------ 272 (806)
T 3cf2_A 204 DDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANE--TGAFF---FLINGP------ 272 (806)
T ss_dssp GGCCSCCTTHHHHHHHHHHHHHCCGGGTSCCCCCCCEEEEECCTTSCHHHHHHHHHTT--TTCEE---EEEEHH------
T ss_pred hhhcCHHHHHHHHHHHHHHHccCHHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHH--hCCeE---EEEEhH------
Confidence 4578888888888776532 110 00234678999999999999999999984 33332 333321
Q ss_pred HHHHHHHHHcCCCCCCCccHHHHHHHHHHHHhCCceEEEEeCCCCC------C-ccChH----HHHHhhcCC--CCCcEE
Q 047321 177 SVAKAIIEGLGVSAFGLSEFESLMKQIQEYITGKKIFLVLDDVWDG------D-YKKWD----PFFSCLKNG--HHESKI 243 (807)
Q Consensus 177 ~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~------~-~~~~~----~l~~~l~~~--~~gs~I 243 (807)
+ +.. .. .......+...+.......+.+|++|++..- . ...-. .+...+... ..+..|
T Consensus 273 ~----l~s----k~-~gese~~lr~lF~~A~~~~PsIIfIDEiDal~~~r~~~~~~~~~riv~~LL~~mdg~~~~~~V~V 343 (806)
T 3cf2_A 273 E----IMS----KL-AGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIV 343 (806)
T ss_dssp H----HHS----SC-TTHHHHHHHHHHHHHTTSCSEEEEEESGGGTCCTTTTCCCTTHHHHHHHHHTHHHHCCGGGCEEE
T ss_pred H----hhc----cc-chHHHHHHHHHHHHHHHcCCeEEEEehhcccccccCCCCChHHHHHHHHHHHHHhcccccCCEEE
Confidence 1 110 00 1111222233333344567999999998431 1 11111 122222211 223345
Q ss_pred EEEcCCHHH-HHHhC----CCceEeCCCCChhhHHHHHHHHHhccCCccCccchHHHHHHHHHHcCCCH
Q 047321 244 LITTHDRSV-ALQLG----SIDIIPVKELGEGECWLLFKQIAFLRRSFEDCEKLEPIGRKIASKCKGLP 307 (807)
Q Consensus 244 liTTR~~~v-~~~~~----~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~~~~I~~~c~glP 307 (807)
|.||...+. -..+. -...+++...+.++-.++|..+.-.. ....... ...|++++.|.-
T Consensus 344 IaaTN~~d~LD~ALrR~GRFd~~I~i~~Pd~~~R~~IL~~~l~~~-~~~~dvd----l~~lA~~T~Gfs 407 (806)
T 3cf2_A 344 MAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNM-KLADDVD----LEQVANETHGHV 407 (806)
T ss_dssp EEECSSTTTSCTTTTSTTSSCEEEECCCCCHHHHHHHHHHTCSSS-EECTTCC----HHHHHHHCCSCC
T ss_pred EEecCChhhcCHHHhCCcccceEEecCCCCHHHHHHHHHHHhcCC-CCCcccC----HHHHHHhcCCCC
Confidence 555554322 11111 13468888888888888887654221 1112223 356788887764
No 302
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=96.26 E-value=0.013 Score=61.48 Aligned_cols=85 Identities=20% Similarity=0.256 Sum_probs=56.2
Q ss_pred CceEEEEEccCCChHHHHHHHHHcCcccccccceEEEEEeCCCCCHHHHHHHHHHHcCCCC-----CCCccHHHHHHHHH
Q 047321 130 GLDVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSNTFEEISVAKAIIEGLGVSA-----FGLSEFESLMKQIQ 204 (807)
Q Consensus 130 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~-----~~~~~~~~~~~~l~ 204 (807)
.-+++.|+|++|+||||||..++... ...=..++|++....++.. .++.++... ....+.++....+.
T Consensus 60 ~G~i~~I~GppGsGKSTLal~la~~~--~~~gg~VlyId~E~s~~~~-----ra~rlgv~~~~l~i~~~~~~e~~l~~~~ 132 (356)
T 3hr8_A 60 RGRIVEIFGQESSGKTTLALHAIAEA--QKMGGVAAFIDAEHALDPV-----YAKNLGVDLKSLLISQPDHGEQALEIVD 132 (356)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHHH--HHTTCCEEEEESSCCCCHH-----HHHHHTCCGGGCEEECCSSHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHH--HhcCCeEEEEecccccchH-----HHHHcCCchhhhhhhhccCHHHHHHHHH
Confidence 56799999999999999999987632 2111246788877777654 344444331 12345566666666
Q ss_pred HHHh-CCceEEEEeCCCC
Q 047321 205 EYIT-GKKIFLVLDDVWD 221 (807)
Q Consensus 205 ~~l~-~k~~LlVlDdv~~ 221 (807)
..++ ++.-++|+|.+..
T Consensus 133 ~l~~~~~~dlvVIDSi~~ 150 (356)
T 3hr8_A 133 ELVRSGVVDLIVVDSVAA 150 (356)
T ss_dssp HHHHTSCCSEEEEECTTT
T ss_pred HHhhhcCCCeEEehHhhh
Confidence 5554 5677999999843
No 303
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=96.19 E-value=0.0021 Score=67.88 Aligned_cols=114 Identities=11% Similarity=0.100 Sum_probs=61.7
Q ss_pred CceEEEEEccCCChHHHHHHHHHcCcccccccceEEEEEeCCCCCHHHHHHHHHHHcCCCCCCCccHHHHHHHHHHHHhC
Q 047321 130 GLDVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSNTFEEISVAKAIIEGLGVSAFGLSEFESLMKQIQEYITG 209 (807)
Q Consensus 130 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~ 209 (807)
...+++|+|+.|+||||+++.+... +.......+. ++.+..... .......+....... +.......+++.+..
T Consensus 122 ~~g~i~I~GptGSGKTTlL~~l~g~--~~~~~~~~i~-t~ed~~e~~--~~~~~~~v~q~~~~~-~~~~~~~~La~aL~~ 195 (356)
T 3jvv_A 122 PRGLVLVTGPTGSGKSTTLAAMLDY--LNNTKYHHIL-TIEDPIEFV--HESKKCLVNQREVHR-DTLGFSEALRSALRE 195 (356)
T ss_dssp SSEEEEEECSTTSCHHHHHHHHHHH--HHHHCCCEEE-EEESSCCSC--CCCSSSEEEEEEBTT-TBSCHHHHHHHHTTS
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhc--ccCCCCcEEE-EccCcHHhh--hhccccceeeeeecc-ccCCHHHHHHHHhhh
Confidence 3459999999999999999998752 2111112221 121211100 000000000000000 111234478888899
Q ss_pred CceEEEEeCCCCCCccChHHHHHhhcCCCCCcEEEEEcCCHHHHH
Q 047321 210 KKIFLVLDDVWDGDYKKWDPFFSCLKNGHHESKILITTHDRSVAL 254 (807)
Q Consensus 210 k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~IliTTR~~~v~~ 254 (807)
.+-+|++|++.+ .+.++.+.... ..|..||+||+..+.+.
T Consensus 196 ~PdvillDEp~d--~e~~~~~~~~~---~~G~~vl~t~H~~~~~~ 235 (356)
T 3jvv_A 196 DPDIILVGEMRD--LETIRLALTAA---ETGHLVFGTLHTTSAAK 235 (356)
T ss_dssp CCSEEEESCCCS--HHHHHHHHHHH---HTTCEEEEEESCSSHHH
T ss_pred CcCEEecCCCCC--HHHHHHHHHHH---hcCCEEEEEEccChHHH
Confidence 999999999963 34444444432 23667999999876653
No 304
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=96.16 E-value=0.022 Score=59.94 Aligned_cols=91 Identities=18% Similarity=0.258 Sum_probs=55.8
Q ss_pred CCceEEEEEccCCChHHHHHHHHHcCccccc----ccceEEEEEeCCCCCHHHHHHHHHHHcCCCC------------CC
Q 047321 129 KGLDVISLVGLGGIGKTTLAQLAYNNDEVKR----NFEKVIWVCVSNTFEEISVAKAIIEGLGVSA------------FG 192 (807)
Q Consensus 129 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~----~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~------------~~ 192 (807)
....++.|+|++|+||||||..++....... .-..++|++....++...+.+ ++..++... ..
T Consensus 120 ~~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~~~~~~~l~~-~~~~~g~~~~~~l~~l~~~~~~~ 198 (343)
T 1v5w_A 120 ESMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTENTFRPDRLRD-IADRFNVDHDAVLDNVLYARAYT 198 (343)
T ss_dssp CSSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSSCCCHHHHHH-HHHHTTCCHHHHHHTEEEEECCS
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHH-HHHHcCCCHHHHHhceeEeecCC
Confidence 3568999999999999999988875321111 124678999888877765543 344444321 11
Q ss_pred CccHHHHHHHHHHHHh---CCceEEEEeCCC
Q 047321 193 LSEFESLMKQIQEYIT---GKKIFLVLDDVW 220 (807)
Q Consensus 193 ~~~~~~~~~~l~~~l~---~k~~LlVlDdv~ 220 (807)
......+...+.+.+. .+.-+||+|.+.
T Consensus 199 ~e~~~~ll~~l~~~i~~~~~~~~lvVIDsl~ 229 (343)
T 1v5w_A 199 SEHQMELLDYVAAKFHEEAGIFKLLIIDSIM 229 (343)
T ss_dssp TTHHHHHHHHHHHHHHHSCSSEEEEEEETSG
T ss_pred HHHHHHHHHHHHHHHHhcCCCccEEEEechH
Confidence 1222233344445443 456688888873
No 305
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=96.16 E-value=0.013 Score=62.91 Aligned_cols=119 Identities=14% Similarity=0.206 Sum_probs=65.6
Q ss_pred CceEEEEEccCCChHHHHHHHHHcCcccc----cccceEEEEEeCCCCCHHHHHHHHHHHcCCCC---------CCCccH
Q 047321 130 GLDVISLVGLGGIGKTTLAQLAYNNDEVK----RNFEKVIWVCVSNTFEEISVAKAIIEGLGVSA---------FGLSEF 196 (807)
Q Consensus 130 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~----~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~---------~~~~~~ 196 (807)
.-.++.|+|++|+|||||+..++-..... ..-..++|++....+....+ +.+++.++... ....+.
T Consensus 177 ~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~~~~~rl-~~~a~~~gl~~~~vleni~~~~~~~~ 255 (400)
T 3lda_A 177 TGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFRPVRL-VSIAQRFGLDPDDALNNVAYARAYNA 255 (400)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHH-HHHHHHTTCCHHHHHHTEEEEECCSH
T ss_pred CCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCccCHHHH-HHHHHHcCCChHhHhhcEEEeccCCh
Confidence 55799999999999999999764211111 12245788887776665543 33555554321 011122
Q ss_pred H---HHHHHHHHHH-hCCceEEEEeCCCCCCccC-------------hHHHHHhhcCC--CCCcEEEEEcCC
Q 047321 197 E---SLMKQIQEYI-TGKKIFLVLDDVWDGDYKK-------------WDPFFSCLKNG--HHESKILITTHD 249 (807)
Q Consensus 197 ~---~~~~~l~~~l-~~k~~LlVlDdv~~~~~~~-------------~~~l~~~l~~~--~~gs~IliTTR~ 249 (807)
+ .....+.+.+ ..+.-+||+|.+...-... ...+...|... ..|..||+||+.
T Consensus 256 ~~~~~~l~~~~~~l~~~~~~llVIDs~t~~~~~~~sg~g~l~~Rq~~l~~il~~L~~lake~gitVIlv~Hv 327 (400)
T 3lda_A 256 DHQLRLLDAAAQMMSESRFSLIVVDSVMALYRTDFSGRGELSARQMHLAKFMRALQRLADQFGVAVVVTNQV 327 (400)
T ss_dssp HHHHHHHHHHHHHHHHSCEEEEEEETGGGGCC------CCHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEEC
T ss_pred HHHHHHHHHHHHHHHhcCCceEEecchhhhCchhhcCccchHHHHHHHHHHHHHHHHHHHHcCCEEEEEEee
Confidence 2 2223333333 3568899999974321100 12233333322 246789999885
No 306
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=96.15 E-value=0.015 Score=67.49 Aligned_cols=68 Identities=19% Similarity=0.244 Sum_probs=44.8
Q ss_pred cHHHHHHHHHHHHhCCce--EEEEeCCCCC-CccChHHHHHhhcCC-CCCcEEEEEcCCHHHHHHhCCCceEeC
Q 047321 195 EFESLMKQIQEYITGKKI--FLVLDDVWDG-DYKKWDPFFSCLKNG-HHESKILITTHDRSVALQLGSIDIIPV 264 (807)
Q Consensus 195 ~~~~~~~~l~~~l~~k~~--LlVlDdv~~~-~~~~~~~l~~~l~~~-~~gs~IliTTR~~~v~~~~~~~~~~~l 264 (807)
..+...-.|.+.+..++- +|+||+.... |...-..+...+... ..|..||++|++.+++.. ..+++.+
T Consensus 205 GGe~QRv~iArAL~~~p~~~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~~~~~--~d~ii~l 276 (670)
T 3ux8_A 205 GGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSMRDLGNTLIVVEHDEDTMLA--ADYLIDI 276 (670)
T ss_dssp HHHHHHHHHHHHHHTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHHTTCEEEEECCCHHHHHH--CSEEEEE
T ss_pred HHHHHHHHHHHHHhhCCCCCEEEEECCccCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHhh--CCEEEEe
Confidence 344455567788877766 9999999765 444445555544332 246789999999987654 3445555
No 307
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=96.13 E-value=0.0064 Score=57.67 Aligned_cols=115 Identities=20% Similarity=0.143 Sum_probs=61.1
Q ss_pred ceEEEEEccCCChHHHHHHHHHcCcccccccceEEEEEeCCC---CCHHHHHHHHHHHcCC------CCC--CCcc----
Q 047321 131 LDVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSNT---FEEISVAKAIIEGLGV------SAF--GLSE---- 195 (807)
Q Consensus 131 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~---~~~~~~~~~i~~~l~~------~~~--~~~~---- 195 (807)
...|.|++..|.||||+|-...- +.-.+=-.+.++.+.+. .....++ +.+.. ... ...+
T Consensus 28 ~g~i~v~tG~GkGKTTaA~Glal--RA~g~G~rV~~vQF~Kg~~~~gE~~~l----~~L~v~~~~~g~gf~~~~~~~~~~ 101 (196)
T 1g5t_A 28 RGIIIVFTGNGKGKTTAAFGTAA--RAVGHGKNVGVVQFIKGTWPNGERNLL----EPHGVEFQVMATGFTWETQNREAD 101 (196)
T ss_dssp CCCEEEEESSSSCHHHHHHHHHH--HHHHTTCCEEEEESSCCSSCCHHHHHH----GGGTCEEEECCTTCCCCGGGHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHH--HHHHCCCeEEEEEeeCCCCCccHHHHH----HhCCcEEEEcccccccCCCCcHHH
Confidence 34566666677999999966543 11111112334443332 2223333 33310 000 0111
Q ss_pred ---HHHHHHHHHHHHh-CCceEEEEeCCCC---CCccChHHHHHhhcCCCCCcEEEEEcCCHH
Q 047321 196 ---FESLMKQIQEYIT-GKKIFLVLDDVWD---GDYKKWDPFFSCLKNGHHESKILITTHDRS 251 (807)
Q Consensus 196 ---~~~~~~~l~~~l~-~k~~LlVlDdv~~---~~~~~~~~l~~~l~~~~~gs~IliTTR~~~ 251 (807)
........++.+. ++--|||||++-. -..-..+.+...+........||+|+|+..
T Consensus 102 ~~~a~~~l~~a~~~l~~~~yDlvILDEi~~al~~g~l~~~ev~~~l~~Rp~~~~vIlTGr~ap 164 (196)
T 1g5t_A 102 TAACMAVWQHGKRMLADPLLDMVVLDELTYMVAYDYLPLEEVISALNARPGHQTVIITGRGCH 164 (196)
T ss_dssp HHHHHHHHHHHHHHTTCTTCSEEEEETHHHHHHTTSSCHHHHHHHHHTSCTTCEEEEECSSCC
T ss_pred HHHHHHHHHHHHHHHhcCCCCEEEEeCCCccccCCCCCHHHHHHHHHhCcCCCEEEEECCCCc
Confidence 1122333444443 4556999999822 133456678888877777778999999853
No 308
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=96.11 E-value=0.0097 Score=60.81 Aligned_cols=120 Identities=18% Similarity=0.159 Sum_probs=62.1
Q ss_pred CceEEEEEccCCChHHHHHHHHHcCccccc--------ccceEEEEEeCCCCCHHHHH---HH------------HHHHc
Q 047321 130 GLDVISLVGLGGIGKTTLAQLAYNNDEVKR--------NFEKVIWVCVSNTFEEISVA---KA------------IIEGL 186 (807)
Q Consensus 130 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~--------~f~~~~wv~~~~~~~~~~~~---~~------------i~~~l 186 (807)
.-.++.|+|++|+||||||..++....... .-..+++++..... ..+. .. +++.+
T Consensus 29 ~G~i~~i~G~~GsGKTtl~~~l~~~~~~g~~~~g~~~~~~~~v~~~~~e~~~--~~~~~r~~~~g~~~~~~~~~~~~~~l 106 (279)
T 1nlf_A 29 AGTVGALVSPGGAGKSMLALQLAAQIAGGPDLLEVGELPTGPVIYLPAEDPP--TAIHHRLHALGAHLSAEERQAVADGL 106 (279)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHTCCCTTCCCCCCCCCEEEEESSSCH--HHHHHHHHHHHTTSCHHHHHHHHHHE
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHhcCCCcCCCccCCCccEEEEECCCCH--HHHHHHHHHHHhhcChhhhhhccCce
Confidence 456999999999999999998875211100 01245666655543 2221 11 12232
Q ss_pred CCCC-----CCCccHHHHHHHHHHHHhCCceEEEEeCCCC--C-CccC---hHHHHHhhcCC--CCCcEEEEEcCCHHHH
Q 047321 187 GVSA-----FGLSEFESLMKQIQEYITGKKIFLVLDDVWD--G-DYKK---WDPFFSCLKNG--HHESKILITTHDRSVA 253 (807)
Q Consensus 187 ~~~~-----~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~--~-~~~~---~~~l~~~l~~~--~~gs~IliTTR~~~v~ 253 (807)
.... ....+... ...+...+. +.-+||+|.+.. . +... ...+...+... ..|..||++|+.....
T Consensus 107 ~l~~~~~~~~~~ls~g~-~~~i~~l~~-~~~livlDe~~~~~~~d~~~~~~~~~~~~~L~~l~~~~g~tvi~i~H~~~~~ 184 (279)
T 1nlf_A 107 LIQPLIGSLPNIMAPEW-FDGLKRAAE-GRRLMVLDTLRRFHIEEENASGPMAQVIGRMEAIAADTGCSIVFLHHASKGA 184 (279)
T ss_dssp EECCCTTSCCCTTSHHH-HHHHHHHHT-TCSEEEEECGGGGCCSCTTCHHHHHHHHHHHHHHHHHHCCEEEEEEEC----
T ss_pred EEeecCCCCcccCCHHH-HHHHHHhcC-CCCEEEECCHHHhcCCCcCchHHHHHHHHHHHHHHHHcCCEEEEEecCCCcc
Confidence 2111 11112222 334444444 477999999865 2 2211 24444444432 3477899999876543
No 309
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=96.09 E-value=0.012 Score=64.05 Aligned_cols=56 Identities=16% Similarity=0.040 Sum_probs=38.9
Q ss_pred HHHHHHHHhCCc--eEEEEeCCCCC-CccChHHHHHhhcCCCCCcEEEEEcCCHHHHHH
Q 047321 200 MKQIQEYITGKK--IFLVLDDVWDG-DYKKWDPFFSCLKNGHHESKILITTHDRSVALQ 255 (807)
Q Consensus 200 ~~~l~~~l~~k~--~LlVlDdv~~~-~~~~~~~l~~~l~~~~~gs~IliTTR~~~v~~~ 255 (807)
.-.+...+-.++ -+|+||++.+. |......+...+.....|..||++|++..++..
T Consensus 303 rl~lA~~l~~~~~~~~LlLDEpt~~LD~~~~~~l~~~L~~l~~~~~vi~itH~~~~~~~ 361 (415)
T 4aby_A 303 RVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLADTRQVLVVTHLAQIAAR 361 (415)
T ss_dssp HHHHHHHHHHCCSSSEEEESSTTTTCCHHHHHHHHHHHHHHTTTSEEEEECSCHHHHTT
T ss_pred HHHHHHHHHhCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHhCCCEEEEEeCcHHHHhh
Confidence 334555565556 89999999776 555555566666544457789999999988753
No 310
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=96.04 E-value=0.0056 Score=59.18 Aligned_cols=42 Identities=31% Similarity=0.282 Sum_probs=33.5
Q ss_pred ccchHHHHHHHHhCCCCCCCCCceEEEEEccCCChHHHHHHHHHc
Q 047321 109 RVDEKNELLSKLLCGSSEQQKGLDVISLVGLGGIGKTTLAQLAYN 153 (807)
Q Consensus 109 R~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 153 (807)
|++.++.+.+.+.... .....+|+|.|++|+||||+++.+..
T Consensus 3 ~~~~~~~l~~~~~~~~---~~~~~~i~i~G~~GsGKstl~~~l~~ 44 (201)
T 1rz3_A 3 LRDRIDFLCKTILAIK---TAGRLVLGIDGLSRSGKTTLANQLSQ 44 (201)
T ss_dssp HHHHHHHHHHHHHTSC---CSSSEEEEEEECTTSSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhc---cCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 5566777888877543 23568999999999999999999875
No 311
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=96.02 E-value=0.054 Score=58.28 Aligned_cols=98 Identities=10% Similarity=0.053 Sum_probs=69.1
Q ss_pred cCcccccccccCCCccccchhhhccccCCCCCCcccEEEEccCCCCCCCcc-cccCCCCccEEeeccCcccccccccccc
Q 047321 675 AFPKLKSLEIDGMKELEEWNYRITRKENISIMPRLSSLQIMNCRKLKALPD-YLLQTIALQKLSIYSCDLLEELPILEDR 753 (807)
Q Consensus 675 ~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~lp~-~l~~l~~L~~L~l~~c~~l~~lP~~~~~ 753 (807)
.+.+|+.+.+.+ +++.+.. ..+..+.+|+.+.|.+ .++.++. .+.++++|+.+.+.. ++..++ ..
T Consensus 295 ~~~~L~~i~l~~--~i~~I~~-----~aF~~c~~L~~i~lp~--~v~~I~~~aF~~c~~L~~i~lp~--~l~~I~---~~ 360 (394)
T 4fs7_A 295 GCSSLTEVKLLD--SVKFIGE-----EAFESCTSLVSIDLPY--LVEEIGKRSFRGCTSLSNINFPL--SLRKIG---AN 360 (394)
T ss_dssp TCTTCCEEEECT--TCCEECT-----TTTTTCTTCCEECCCT--TCCEECTTTTTTCTTCCEECCCT--TCCEEC---TT
T ss_pred cccccccccccc--ccceech-----hhhcCCCCCCEEEeCC--cccEEhHHhccCCCCCCEEEECc--cccEeh---HH
Confidence 566777777754 3554443 3455678899998854 4777753 567899999999965 366664 25
Q ss_pred cCCCCCCCCeeeeccCCCcccCCccCCCCCccccc
Q 047321 754 RTTDIPRLSSLAIWYCPKLKVLPDYLLRTTTLQAG 788 (807)
Q Consensus 754 ~~~~l~~L~~L~i~~c~~l~~lP~~l~~l~~L~~L 788 (807)
.+.++++|+.+.+.. .++.+...+.++++|+.+
T Consensus 361 aF~~C~~L~~i~lp~--~~~~~~~~F~~c~~L~~I 393 (394)
T 4fs7_A 361 AFQGCINLKKVELPK--RLEQYRYDFEDTTKFKWI 393 (394)
T ss_dssp TBTTCTTCCEEEEEG--GGGGGGGGBCTTCEEEEE
T ss_pred HhhCCCCCCEEEECC--CCEEhhheecCCCCCcEE
Confidence 678899999999864 456666778888888754
No 312
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=95.95 E-value=0.02 Score=59.81 Aligned_cols=89 Identities=19% Similarity=0.296 Sum_probs=54.8
Q ss_pred CceEEEEEccCCChHHHHHHHHHcCcccccc----cceEEEEEeCCCCCHHHHHHHHHHHcCCCC---------CCCccH
Q 047321 130 GLDVISLVGLGGIGKTTLAQLAYNNDEVKRN----FEKVIWVCVSNTFEEISVAKAIIEGLGVSA---------FGLSEF 196 (807)
Q Consensus 130 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~----f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~---------~~~~~~ 196 (807)
...++.|+|++|+||||||..++........ -..++|++....++..++. .+++.++... ....+.
T Consensus 106 ~G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~~~~~~~l~-~~~~~~g~~~~~~~~~l~~~~~~~~ 184 (324)
T 2z43_A 106 TRTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEGTFRWERIE-NMAKALGLDIDNVMNNIYYIRAINT 184 (324)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHHHH-HHHHHTTCCHHHHHHTEEEEECCSH
T ss_pred CCcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHH-HHHHHhCCCHHHHhccEEEEeCCCH
Confidence 4579999999999999999888753211110 2367899888887776654 3445554321 011122
Q ss_pred H---HHHHHHHHHHh--CCceEEEEeCC
Q 047321 197 E---SLMKQIQEYIT--GKKIFLVLDDV 219 (807)
Q Consensus 197 ~---~~~~~l~~~l~--~k~~LlVlDdv 219 (807)
+ ++...+...++ .+.-+||+|.+
T Consensus 185 ~~~~~~l~~l~~~~~~~~~~~lvVIDsl 212 (324)
T 2z43_A 185 DHQIAIVDDLQELVSKDPSIKLIVVDSV 212 (324)
T ss_dssp HHHHHHHHHHHHHHHHCTTEEEEEETTT
T ss_pred HHHHHHHHHHHHHHHhccCCCEEEEeCc
Confidence 2 23444555553 46678888887
No 313
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=95.87 E-value=0.035 Score=55.21 Aligned_cols=116 Identities=18% Similarity=0.191 Sum_probs=62.3
Q ss_pred CceEEEEEccCCChHHHHHHHHHcCcccccccceEEEEEeCCCCCHHHHHHHHHHHcCCC-------------C------
Q 047321 130 GLDVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSNTFEEISVAKAIIEGLGVS-------------A------ 190 (807)
Q Consensus 130 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~-------------~------ 190 (807)
.-.++.|.|++|+||||||..++... ...=..++|++.... ..++.+.+ ..++.. .
T Consensus 22 ~G~~~~i~G~~GsGKTtl~~~~~~~~--~~~~~~v~~~~~e~~--~~~~~~~~-~~~g~~~~~~~~~~~l~~~~~~~~~~ 96 (247)
T 2dr3_A 22 ERNVVLLSGGPGTGKTIFSQQFLWNG--LKMGEPGIYVALEEH--PVQVRQNM-AQFGWDVKPYEEKGMFAMVDAFTAGI 96 (247)
T ss_dssp TTCEEEEEECTTSSHHHHHHHHHHHH--HHTTCCEEEEESSSC--HHHHHHHH-HTTTCCCHHHHHHTSEEEEECSTTTT
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHH--HhcCCeEEEEEccCC--HHHHHHHH-HHcCCCHHHHhhCCcEEEEecchhhc
Confidence 45699999999999999988775421 111234667765443 33333322 222111 0
Q ss_pred -----------CCCccHHHHHHHHHHHHh-CCceEEEEeCCCCC---CccChHHHHHhhcC--CCCCcEEEEEcCCH
Q 047321 191 -----------FGLSEFESLMKQIQEYIT-GKKIFLVLDDVWDG---DYKKWDPFFSCLKN--GHHESKILITTHDR 250 (807)
Q Consensus 191 -----------~~~~~~~~~~~~l~~~l~-~k~~LlVlDdv~~~---~~~~~~~l~~~l~~--~~~gs~IliTTR~~ 250 (807)
....+..++...+.+.+. .+.-++|+|.+..- +..........+.. ...|..||+|++..
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~vviD~~~~l~~~~~~~~~~~l~~l~~~~~~~~~~vi~~~h~~ 173 (247)
T 2dr3_A 97 GKSKEYEKYIVHDLTDIREFIEVLRQAIRDINAKRVVVDSVTTLYINKPAMARSIILQLKRVLAGTGCTSIFVSQVS 173 (247)
T ss_dssp CC--CCCSCBCSCCSSHHHHHHHHHHHHHHHTCCEEEEETSGGGTTTCGGGHHHHHHHHHHHHHHTTCEEEEEEECC
T ss_pred ccccccccccccCccCHHHHHHHHHHHHHHhCCCEEEECCchHhhcCCHHHHHHHHHHHHHHHHHCCCeEEEEecCC
Confidence 011244555566666553 34568999998432 22222222222221 13467788888754
No 314
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=95.87 E-value=0.0034 Score=63.23 Aligned_cols=80 Identities=20% Similarity=0.163 Sum_probs=40.5
Q ss_pred CCCcccEEEEccCCCCCCCc---ccccCCCCccEEeeccCcccccccccccccCCCCCCCCeeeeccCCCcccCCc----
Q 047321 705 IMPRLSSLQIMNCRKLKALP---DYLLQTIALQKLSIYSCDLLEELPILEDRRTTDIPRLSSLAIWYCPKLKVLPD---- 777 (807)
Q Consensus 705 ~l~~L~~L~l~~c~~L~~lp---~~l~~l~~L~~L~l~~c~~l~~lP~~~~~~~~~l~~L~~L~i~~c~~l~~lP~---- 777 (807)
.+|+|+.|+++++ ++..++ ..+..+++|+.|+|+++ .+..+..+ ..+..+ +|++|.+.+++--..+|.
T Consensus 168 ~l~~L~~L~Ls~N-~l~~l~~l~~~~~~l~~L~~L~Ls~N-~i~~~~~l--~~l~~l-~L~~L~L~~Npl~~~~~~~~~y 242 (267)
T 3rw6_A 168 NIPELLSLNLSNN-RLYRLDDMSSIVQKAPNLKILNLSGN-ELKSEREL--DKIKGL-KLEELWLDGNSLCDTFRDQSTY 242 (267)
T ss_dssp HCTTCCEEECTTS-CCCCCGGGTTHHHHSTTCCEEECTTS-CCCSGGGG--GGGTTS-CCSEEECTTSTTGGGCSSHHHH
T ss_pred hCCCCCEEECCCC-CCCCCccchhHHhhCCCCCEEECCCC-ccCCchhh--hhcccC-CcceEEccCCcCccccCcchhH
Confidence 4566666666665 454443 33345666666666653 44444211 111222 666666666554444441
Q ss_pred ---cCCCCCcccccc
Q 047321 778 ---YLLRTTTLQAGE 789 (807)
Q Consensus 778 ---~l~~l~~L~~L~ 789 (807)
.+..+++|+.||
T Consensus 243 ~~~il~~~P~L~~LD 257 (267)
T 3rw6_A 243 ISAIRERFPKLLRLD 257 (267)
T ss_dssp HHHHHHHCTTCCEES
T ss_pred HHHHHHHCcccCeEC
Confidence 244556666555
No 315
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=95.81 E-value=0.019 Score=59.99 Aligned_cols=89 Identities=18% Similarity=0.296 Sum_probs=54.6
Q ss_pred CceEEEEEccCCChHHHHHHHHHcCccccc---------cc-----ceEEEEEeCCCCCHHHHHHHHHHHcCCCC-----
Q 047321 130 GLDVISLVGLGGIGKTTLAQLAYNNDEVKR---------NF-----EKVIWVCVSNTFEEISVAKAIIEGLGVSA----- 190 (807)
Q Consensus 130 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~---------~f-----~~~~wv~~~~~~~~~~~~~~i~~~l~~~~----- 190 (807)
...++.|+|.+|+||||||..++....... .. ..++|++....++..++.+ +++.++...
T Consensus 97 ~g~i~~i~G~~gsGKT~la~~la~~~~l~~~~~~~~~~~~~gg~~~~~v~yi~~e~~~~~~~l~~-~~~~~g~~~~~~~~ 175 (322)
T 2i1q_A 97 SQSVTEFAGVFGSGKTQIMHQSCVNLQNPEFLFYDEEAVSKGEVAQPKAVYIDTEGTFRPERIMQ-MAEHAGIDGQTVLD 175 (322)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHHTTCGGGEECCTTTSCTTTTSSEEEEEEESSSCCCHHHHHH-HHHHHTCCHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhccccccccccccccCCCCCceEEEEECCCCCCHHHHHH-HHHHcCCCHHHHhc
Confidence 567999999999999999988775321111 11 3678998888877766553 344444321
Q ss_pred ----CCCccHH---HHHHHHHHHHh--CCceEEEEeCC
Q 047321 191 ----FGLSEFE---SLMKQIQEYIT--GKKIFLVLDDV 219 (807)
Q Consensus 191 ----~~~~~~~---~~~~~l~~~l~--~k~~LlVlDdv 219 (807)
....+.+ ++...+.+.+. .+.-+||+|.+
T Consensus 176 ~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~lvVIDsl 213 (322)
T 2i1q_A 176 NTFVARAYNSDMQMLFAEKIEDLIQEGNNIKLVVIDSL 213 (322)
T ss_dssp TEEEEECSSHHHHHHHHHTHHHHHHTTCEEEEEEEECS
T ss_pred CEEEEeCCCHHHHHHHHHHHHHHHhhccCccEEEEECc
Confidence 0112222 23444555554 34568888887
No 316
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=95.79 E-value=0.0099 Score=62.22 Aligned_cols=107 Identities=19% Similarity=0.187 Sum_probs=57.7
Q ss_pred ceEEEEEccCCChHHHHHHHHHcCcccccccceEEEEEeCCCCCHHHHHHHHHHHcCCCCCCCccHHHHHHHHHHHHhCC
Q 047321 131 LDVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSNTFEEISVAKAIIEGLGVSAFGLSEFESLMKQIQEYITGK 210 (807)
Q Consensus 131 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k 210 (807)
..+++|+|++|+|||||++.+..-.. .-...+.+.-......... + ..++.- .+ ........+.+.+..+
T Consensus 171 g~~v~i~G~~GsGKTTll~~l~g~~~---~~~g~i~i~~~~e~~~~~~-~---~~i~~~-~g--gg~~~r~~la~aL~~~ 240 (330)
T 2pt7_A 171 GKNVIVCGGTGSGKTTYIKSIMEFIP---KEERIISIEDTEEIVFKHH-K---NYTQLF-FG--GNITSADCLKSCLRMR 240 (330)
T ss_dssp TCCEEEEESTTSCHHHHHHHGGGGSC---TTSCEEEEESSCCCCCSSC-S---SEEEEE-CB--TTBCHHHHHHHHTTSC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCc---CCCcEEEECCeeccccccc-h---hEEEEE-eC--CChhHHHHHHHHhhhC
Confidence 35899999999999999999976211 1233444432111110000 0 000000 00 1122345577778888
Q ss_pred ceEEEEeCCCCCCccChHHHHHhhcCCCCCcEEEEEcCCHHH
Q 047321 211 KIFLVLDDVWDGDYKKWDPFFSCLKNGHHESKILITTHDRSV 252 (807)
Q Consensus 211 ~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~IliTTR~~~v 252 (807)
+-+|++|++.+. +.++ ....+..+ +..+|+||+....
T Consensus 241 p~ilildE~~~~--e~~~-~l~~~~~g--~~tvi~t~H~~~~ 277 (330)
T 2pt7_A 241 PDRIILGELRSS--EAYD-FYNVLCSG--HKGTLTTLHAGSS 277 (330)
T ss_dssp CSEEEECCCCST--HHHH-HHHHHHTT--CCCEEEEEECSSH
T ss_pred CCEEEEcCCChH--HHHH-HHHHHhcC--CCEEEEEEcccHH
Confidence 999999999652 3333 33333332 2237888887653
No 317
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=95.79 E-value=0.026 Score=59.42 Aligned_cols=85 Identities=21% Similarity=0.192 Sum_probs=55.0
Q ss_pred CceEEEEEccCCChHHHHHHHHHcCcccccccceEEEEEeCCCCCHHHHHHHHHHHcCCCC-----CCCccHHHHHHHHH
Q 047321 130 GLDVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSNTFEEISVAKAIIEGLGVSA-----FGLSEFESLMKQIQ 204 (807)
Q Consensus 130 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~-----~~~~~~~~~~~~l~ 204 (807)
.-+++.|+|++|+||||||..++.. ....=..++|++....++.. .++.++... ....+.++....+.
T Consensus 60 ~G~iv~I~G~pGsGKTtLal~la~~--~~~~g~~vlyi~~E~~~~~~-----~a~~lG~~~~~l~i~~~~~~e~~l~~~~ 132 (349)
T 2zr9_A 60 RGRVIEIYGPESSGKTTVALHAVAN--AQAAGGIAAFIDAEHALDPE-----YAKKLGVDTDSLLVSQPDTGEQALEIAD 132 (349)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHH--HHHTTCCEEEEESSCCCCHH-----HHHHTTCCGGGCEEECCSSHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH--HHhCCCeEEEEECCCCcCHH-----HHHHcCCCHHHeEEecCCCHHHHHHHHH
Confidence 4679999999999999999888753 21122357889888777653 244444321 11234555555555
Q ss_pred HHHh-CCceEEEEeCCCC
Q 047321 205 EYIT-GKKIFLVLDDVWD 221 (807)
Q Consensus 205 ~~l~-~k~~LlVlDdv~~ 221 (807)
...+ .+.-+||+|.+..
T Consensus 133 ~l~~~~~~~lIVIDsl~~ 150 (349)
T 2zr9_A 133 MLVRSGALDIIVIDSVAA 150 (349)
T ss_dssp HHHTTTCCSEEEEECGGG
T ss_pred HHHhcCCCCEEEEcChHh
Confidence 5543 4577999999843
No 318
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=95.78 E-value=0.033 Score=69.30 Aligned_cols=67 Identities=13% Similarity=0.087 Sum_probs=41.6
Q ss_pred HHHHHHHHHHHHhCCceEEEEeCCCCC-CccChHHHHHhhcCCCCCcEEEEEcCCHHHHHHhCCCceEeC
Q 047321 196 FESLMKQIQEYITGKKIFLVLDDVWDG-DYKKWDPFFSCLKNGHHESKILITTHDRSVALQLGSIDIIPV 264 (807)
Q Consensus 196 ~~~~~~~l~~~l~~k~~LlVlDdv~~~-~~~~~~~l~~~l~~~~~gs~IliTTR~~~v~~~~~~~~~~~l 264 (807)
.+...-.+.+.+-.++-+++||++.+. |.+.-..+...+.....|..+|++||+...... .+.++.+
T Consensus 530 Gq~QriaiARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~l~~i~~--~d~i~vl 597 (1284)
T 3g5u_A 530 GQKQRIAIARALVRNPKILLLDEATSALDTESEAVVQAALDKAREGRTTIVIAHRLSTVRN--ADVIAGF 597 (1284)
T ss_dssp HHHHHHHHHHHHHHCCSEEEEESTTCSSCHHHHHHHHHHHHHHHTTSEEEEECSCHHHHTT--CSEEEEC
T ss_pred HHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHc--CCEEEEE
Confidence 344444577777778889999999765 333333344444433356779999998876643 3445544
No 319
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=95.77 E-value=0.01 Score=70.51 Aligned_cols=117 Identities=15% Similarity=0.102 Sum_probs=58.6
Q ss_pred CceEEEEEccCCChHHHHHHHHHcCccc--cccc-ce-EEEEEeCCCCCHHHHHHHHHHHcCCC---CCCCccHHHHHHH
Q 047321 130 GLDVISLVGLGGIGKTTLAQLAYNNDEV--KRNF-EK-VIWVCVSNTFEEISVAKAIIEGLGVS---AFGLSEFESLMKQ 202 (807)
Q Consensus 130 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~--~~~f-~~-~~wv~~~~~~~~~~~~~~i~~~l~~~---~~~~~~~~~~~~~ 202 (807)
...+++|+|++|+||||+.+.+.--... .+.| +. ..-+.+-+ .++..++.. ..+......-...
T Consensus 661 ~g~i~~ItGpNGsGKSTlLr~ial~~~~aq~G~~vpa~~~~~~~~d---------~i~~~ig~~d~l~~~lStf~~e~~~ 731 (934)
T 3thx_A 661 KQMFHIITGPNMGGKSTYIRQTGVIVLMAQIGCFVPCESAEVSIVD---------CILARVGAGDSQLKGVSTFMAEMLE 731 (934)
T ss_dssp TBCEEEEECCTTSSHHHHHHHHHHHHHHHHHTCCBSEEEEEEECCS---------EEEEECC---------CHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHHhcCCccccccccchHHH---------HHHHhcCchhhHHHhHhhhHHHHHH
Confidence 4579999999999999999988210000 0111 00 00011000 000001100 0011222222333
Q ss_pred HHHHH--hCCceEEEEeCCCCC-CccChHHH----HHhhcCCCCCcEEEEEcCCHHHHHHh
Q 047321 203 IQEYI--TGKKIFLVLDDVWDG-DYKKWDPF----FSCLKNGHHESKILITTHDRSVALQL 256 (807)
Q Consensus 203 l~~~l--~~k~~LlVlDdv~~~-~~~~~~~l----~~~l~~~~~gs~IliTTR~~~v~~~~ 256 (807)
+...+ ..++-|++||++... +......+ ...+.. ..|+.||++|++.+++...
T Consensus 732 ~a~il~~a~~~sLlLLDEp~~GlD~~~~~~i~~~il~~l~~-~~g~~vl~aTH~~el~~la 791 (934)
T 3thx_A 732 TASILRSATKDSLIIIDELGRGTSTYDGFGLAWAISEYIAT-KIGAFCMFATHFHELTALA 791 (934)
T ss_dssp HHHHHHHCCTTCEEEEESCSCSSCHHHHHHHHHHHHHHHHH-TTCCEEEEEESCGGGGGGG
T ss_pred HHHHHHhccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHh-cCCCEEEEEcCcHHHHHHh
Confidence 44444 578899999999665 32222222 223322 2478999999998876543
No 320
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=95.63 E-value=0.024 Score=58.72 Aligned_cols=46 Identities=15% Similarity=0.147 Sum_probs=34.1
Q ss_pred cccccchHHHHHHHHhCCCCCCCCCceEEEEEccCCChHHHHHHHHHc
Q 047321 106 VCGRVDEKNELLSKLLCGSSEQQKGLDVISLVGLGGIGKTTLAQLAYN 153 (807)
Q Consensus 106 ~vGR~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 153 (807)
++|....+..+...+..... .....+|+|.|++|+||||+|+.+..
T Consensus 69 ~~~~~~~l~~~~~~~l~~~~--~~~p~iigI~GpsGSGKSTl~~~L~~ 114 (321)
T 3tqc_A 69 YVTARQTLQQATYQFLGKPE--PKVPYIIGIAGSVAVGKSTTSRVLKA 114 (321)
T ss_dssp HHHHHHHHHHHHHHHHTCCC--CCCCEEEEEECCTTSSHHHHHHHHHH
T ss_pred hhcchHHHHHHHHHHhccCC--CCCCEEEEEECCCCCCHHHHHHHHHH
Confidence 45555566666666655432 34677999999999999999999865
No 321
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=95.63 E-value=0.04 Score=68.80 Aligned_cols=51 Identities=14% Similarity=0.177 Sum_probs=35.1
Q ss_pred HHHHHHHhCCceEEEEeCCCCC-CccChHHHHHhhcCCCCCcEEEEEcCCHH
Q 047321 201 KQIQEYITGKKIFLVLDDVWDG-DYKKWDPFFSCLKNGHHESKILITTHDRS 251 (807)
Q Consensus 201 ~~l~~~l~~k~~LlVlDdv~~~-~~~~~~~l~~~l~~~~~gs~IliTTR~~~ 251 (807)
-.+.+.+-.++-+||||++... |.+.=..+...+.....|..+|++||.-.
T Consensus 1226 iaiARAllr~~~ILiLDEaTSaLD~~tE~~Iq~~l~~~~~~~TvI~IAHRLs 1277 (1321)
T 4f4c_A 1226 IAIARALVRNPKILLLDEATSALDTESEKVVQEALDRAREGRTCIVIAHRLN 1277 (1321)
T ss_dssp HHHHHHHHSCCSEEEEESCCCSTTSHHHHHHHHHHTTTSSSSEEEEECSSSS
T ss_pred HHHHHHHHhCCCEEEEeCccccCCHHHHHHHHHHHHHHcCCCEEEEeccCHH
Confidence 3466666667789999999765 33333446677777667888888887643
No 322
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=95.58 E-value=0.041 Score=58.21 Aligned_cols=84 Identities=18% Similarity=0.205 Sum_probs=55.5
Q ss_pred CceEEEEEccCCChHHHHHHHHHcCcccccccceEEEEEeCCCCCHHHHHHHHHHHcCCCC-----CCCccHHHHHHHHH
Q 047321 130 GLDVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSNTFEEISVAKAIIEGLGVSA-----FGLSEFESLMKQIQ 204 (807)
Q Consensus 130 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~-----~~~~~~~~~~~~l~ 204 (807)
..+++.|.|.+|+||||||..++... ...-..++|++....++.. .++.++... ....+.+++...+.
T Consensus 73 ~G~li~I~G~pGsGKTtlal~la~~~--~~~g~~vlyi~~E~s~~~~-----~a~~~g~d~~~l~i~~~~~~e~~l~~l~ 145 (366)
T 1xp8_A 73 RGRITEIYGPESGGKTTLALAIVAQA--QKAGGTCAFIDAEHALDPV-----YARALGVNTDELLVSQPDNGEQALEIME 145 (366)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHH--HHTTCCEEEEESSCCCCHH-----HHHHTTCCGGGCEEECCSSHHHHHHHHH
T ss_pred CCcEEEEEcCCCCChHHHHHHHHHHH--HHCCCeEEEEECCCChhHH-----HHHHcCCCHHHceeecCCcHHHHHHHHH
Confidence 45689999999999999998877532 1122358899988777654 234444321 12235566666666
Q ss_pred HHHh-CCceEEEEeCCC
Q 047321 205 EYIT-GKKIFLVLDDVW 220 (807)
Q Consensus 205 ~~l~-~k~~LlVlDdv~ 220 (807)
...+ +..-+||+|.+.
T Consensus 146 ~l~~~~~~~lVVIDsl~ 162 (366)
T 1xp8_A 146 LLVRSGAIDVVVVDSVA 162 (366)
T ss_dssp HHHTTTCCSEEEEECTT
T ss_pred HHHhcCCCCEEEEeChH
Confidence 6654 456699999984
No 323
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=95.56 E-value=0.032 Score=58.81 Aligned_cols=84 Identities=19% Similarity=0.199 Sum_probs=53.9
Q ss_pred CceEEEEEccCCChHHHHHHHHHcCcccccccceEEEEEeCCCCCHHHHHHHHHHHcCCCCC-----CCccHHHHHHHHH
Q 047321 130 GLDVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSNTFEEISVAKAIIEGLGVSAF-----GLSEFESLMKQIQ 204 (807)
Q Consensus 130 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~-----~~~~~~~~~~~l~ 204 (807)
..+++.|.|.+|+||||||..++.... ..=..++|++....++... +..++.... ...+.+++...+.
T Consensus 62 ~G~ii~I~G~pGsGKTtLal~la~~~~--~~g~~vlyid~E~s~~~~~-----a~~~g~~~~~l~i~~~~~~e~~~~~~~ 134 (356)
T 1u94_A 62 MGRIVEIYGPESSGKTTLTLQVIAAAQ--REGKTCAFIDAEHALDPIY-----ARKLGVDIDNLLCSQPDTGEQALEICD 134 (356)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHHHHH--HTTCCEEEEESSCCCCHHH-----HHHTTCCGGGCEEECCSSHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH--HCCCeEEEEeCCCCccHHH-----HHHcCCChhheeeeCCCCHHHHHHHHH
Confidence 457999999999999999988875321 1223578998887776442 344443211 1224455555555
Q ss_pred HHH-hCCceEEEEeCCC
Q 047321 205 EYI-TGKKIFLVLDDVW 220 (807)
Q Consensus 205 ~~l-~~k~~LlVlDdv~ 220 (807)
... .++.-+||+|.+.
T Consensus 135 ~l~~~~~~~lVVIDsl~ 151 (356)
T 1u94_A 135 ALARSGAVDVIVVDSVA 151 (356)
T ss_dssp HHHHHTCCSEEEEECGG
T ss_pred HHHhccCCCEEEEcCHH
Confidence 444 3566799999973
No 324
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=95.48 E-value=0.0087 Score=58.13 Aligned_cols=38 Identities=29% Similarity=0.330 Sum_probs=28.4
Q ss_pred hHHHHHHHHhCCCCCCCCCceEEEEEccCCChHHHHHHHHHc
Q 047321 112 EKNELLSKLLCGSSEQQKGLDVISLVGLGGIGKTTLAQLAYN 153 (807)
Q Consensus 112 ~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 153 (807)
-+++|.+.+... .....+|+|+|++|+|||||++.+..
T Consensus 7 ~~~~~~~~~~~~----~~~g~~v~I~G~sGsGKSTl~~~l~~ 44 (208)
T 3c8u_A 7 LCQGVLERLDPR----QPGRQLVALSGAPGSGKSTLSNPLAA 44 (208)
T ss_dssp HHHHHHHHSCTT----CCSCEEEEEECCTTSCTHHHHHHHHH
T ss_pred HHHHHHHHHHhc----CCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 344555555432 13568999999999999999999876
No 325
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=95.48 E-value=0.046 Score=55.79 Aligned_cols=82 Identities=15% Similarity=0.246 Sum_probs=53.5
Q ss_pred EEEEEccCCChHHHHHHHHHcCcccccc--cceEEEEEeCCCCCHHHHHHHHHHHcCCCCC-----CCccHHHH-HHHHH
Q 047321 133 VISLVGLGGIGKTTLAQLAYNNDEVKRN--FEKVIWVCVSNTFEEISVAKAIIEGLGVSAF-----GLSEFESL-MKQIQ 204 (807)
Q Consensus 133 vi~I~G~gGiGKTtLa~~v~~~~~~~~~--f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~-----~~~~~~~~-~~~l~ 204 (807)
++-|.|++|+||||||..++.. .... =..++||+....++.. .+++++.... ...+.++. ...+.
T Consensus 30 iteI~G~pGsGKTtL~Lq~~~~--~~~~g~g~~vlyId~E~s~~~~-----ra~~lGvd~d~llv~~~~~~E~~~l~i~~ 102 (333)
T 3io5_A 30 LLILAGPSKSFKSNFGLTMVSS--YMRQYPDAVCLFYDSEFGITPA-----YLRSMGVDPERVIHTPVQSLEQLRIDMVN 102 (333)
T ss_dssp EEEEEESSSSSHHHHHHHHHHH--HHHHCTTCEEEEEESSCCCCHH-----HHHHTTCCGGGEEEEECSBHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH--HHhcCCCceEEEEeccchhhHH-----HHHHhCCCHHHeEEEcCCCHHHHHHHHHH
Confidence 7899999999999999887653 2222 2357899888887754 2566665421 12345555 33332
Q ss_pred HH--H-hCCceEEEEeCCCC
Q 047321 205 EY--I-TGKKIFLVLDDVWD 221 (807)
Q Consensus 205 ~~--l-~~k~~LlVlDdv~~ 221 (807)
.. + .++.-++|+|-+..
T Consensus 103 ~l~~i~~~~~~lvVIDSI~a 122 (333)
T 3io5_A 103 QLDAIERGEKVVVFIDSLGN 122 (333)
T ss_dssp HHHTCCTTCCEEEEEECSTT
T ss_pred HHHHhhccCceEEEEecccc
Confidence 22 2 45788999999844
No 326
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=95.46 E-value=0.13 Score=56.71 Aligned_cols=176 Identities=14% Similarity=0.084 Sum_probs=89.5
Q ss_pred CCccccccchHHHHHHHH---hCCCCC---CCCCceEEEEEccCCChHHHHHHHHHcCcccccccceEEEEEeCCCCCHH
Q 047321 103 EGGVCGRVDEKNELLSKL---LCGSSE---QQKGLDVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSNTFEEI 176 (807)
Q Consensus 103 ~~~~vGR~~~~~~l~~~L---~~~~~~---~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~ 176 (807)
-.+++|.++.+.++.+.. .....- .-.-.+-+.|+|++|+||||||+.++.. ... ..+.++.+.-..
T Consensus 30 f~dv~G~~~~k~~l~~lv~~l~~~~~~~~lg~~ip~GvLL~GppGtGKTtLaraIa~~--~~~---~~i~i~g~~~~~-- 102 (499)
T 2dhr_A 30 FKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGE--ARV---PFITASGSDFVE-- 102 (499)
T ss_dssp TTSSCSCHHHHHHHHHHHHHHHCGGGTTTTSCCCCSEEEEECSSSSSHHHHHHHHHHH--TTC---CEEEEEGGGGTS--
T ss_pred HHHcCCcHHHHHHHHHHHHHhhchhhhhhccCCCCceEEEECCCCCCHHHHHHHHHHH--hCC---CEEEEehhHHHH--
Confidence 356899987766665543 221000 0011223899999999999999999873 222 223333321110
Q ss_pred HHHHHHHHHcCCCCCCCccHHHHHHHHHHHHh----CCceEEEEeCCCCCC----------ccCh----HHHHHhhcCC-
Q 047321 177 SVAKAIIEGLGVSAFGLSEFESLMKQIQEYIT----GKKIFLVLDDVWDGD----------YKKW----DPFFSCLKNG- 237 (807)
Q Consensus 177 ~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~----~k~~LlVlDdv~~~~----------~~~~----~~l~~~l~~~- 237 (807)
.. .......++..++ ..+.++++||+..-. ...+ ..+...+..+
T Consensus 103 ------------~~-----~g~~~~~v~~lfq~a~~~~p~il~IDEId~l~~~r~~~~~~~~~e~~~~l~~LL~~Ldg~~ 165 (499)
T 2dhr_A 103 ------------MF-----VGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFE 165 (499)
T ss_dssp ------------SC-----TTHHHHHHHHHTTTSSSSSSCEEEEECGGGTCCCSSSSTTTSSHHHHHHHHHHHHHGGGCC
T ss_pred ------------hh-----hhhHHHHHHHHHHHHHhcCCCEEEEehHHHHHHhhccCcCCCcHHHHHHHHHHHHHhcccc
Confidence 00 0011122333332 235799999984311 1111 2233333322
Q ss_pred -CCCcEEEEEcCCHHHHHH-h----CCCceEeCCCCChhhHHHHHHHHHhccCCccCccchHHHHHHHHHHcCCCH
Q 047321 238 -HHESKILITTHDRSVALQ-L----GSIDIIPVKELGEGECWLLFKQIAFLRRSFEDCEKLEPIGRKIASKCKGLP 307 (807)
Q Consensus 238 -~~gs~IliTTR~~~v~~~-~----~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~~~~I~~~c~glP 307 (807)
..+..|+.||...++... + .-...+.++..+.++-.+++..++-. ........ ...|++.+.|..
T Consensus 166 ~~~~viviAatn~p~~LD~aLlr~gRfdr~i~i~~Pd~~~R~~IL~~~~~~-~~l~~dv~----l~~lA~~t~G~~ 236 (499)
T 2dhr_A 166 KDTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARG-KPLAEDVD----LALLAKRTPGFV 236 (499)
T ss_dssp SSCCCEEEECCSCGGGSCTTTSSTTSSCCEEECCCCCHHHHHHHHHHTTSS-SCCCCSST----THHHHTTSCSCC
T ss_pred cCccEEEEEecCChhhcCcccccccccceEEecCCCCHHHHHHHHHHHHhc-CCCChHHH----HHHHHHhcCCCC
Confidence 233455666666544211 1 11247888888888888888765421 11111111 355777787765
No 327
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=95.41 E-value=0.27 Score=52.73 Aligned_cols=85 Identities=18% Similarity=0.275 Sum_probs=59.4
Q ss_pred CCCCcccEEEEccCCCCCCCcc-cccCCCCccEEeeccCcccccccccccccCCCCCCCCeeeeccCCCcccCC-ccCCC
Q 047321 704 SIMPRLSSLQIMNCRKLKALPD-YLLQTIALQKLSIYSCDLLEELPILEDRRTTDIPRLSSLAIWYCPKLKVLP-DYLLR 781 (807)
Q Consensus 704 ~~l~~L~~L~l~~c~~L~~lp~-~l~~l~~L~~L~l~~c~~l~~lP~~~~~~~~~l~~L~~L~i~~c~~l~~lP-~~l~~ 781 (807)
..+++|+.+.+.. .++.++. .+..+++|+.+.|.. .++.+. ...+.++.+|+.+.+-. .++.++ ..+.+
T Consensus 285 ~~c~~L~~i~l~~--~i~~I~~~aF~~c~~L~~i~lp~--~v~~I~---~~aF~~C~~L~~i~ip~--sv~~I~~~aF~~ 355 (394)
T 4gt6_A 285 MNCPALQDIEFSS--RITELPESVFAGCISLKSIDIPE--GITQIL---DDAFAGCEQLERIAIPS--SVTKIPESAFSN 355 (394)
T ss_dssp TTCTTCCEEECCT--TCCEECTTTTTTCTTCCEEECCT--TCCEEC---TTTTTTCTTCCEEEECT--TCCBCCGGGGTT
T ss_pred ccccccccccCCC--cccccCceeecCCCCcCEEEeCC--cccEeh---HhHhhCCCCCCEEEECc--ccCEEhHhHhhC
Confidence 3456677776642 4556654 356678888888864 355554 24577888999998853 477776 57889
Q ss_pred CCcccccccccchhhh
Q 047321 782 TTTLQAGEQDYENEKF 797 (807)
Q Consensus 782 l~~L~~L~l~~~~~~~ 797 (807)
|++|+.+++.++...+
T Consensus 356 C~~L~~i~~~~~~~~~ 371 (394)
T 4gt6_A 356 CTALNNIEYSGSRSQW 371 (394)
T ss_dssp CTTCCEEEESSCHHHH
T ss_pred CCCCCEEEECCceeeh
Confidence 9999999998876543
No 328
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=95.41 E-value=0.056 Score=67.46 Aligned_cols=57 Identities=16% Similarity=0.122 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHHhCCceEEEEeCCCCC-CccChHHHHHhhcCCCCCcEEEEEcCCHHH
Q 047321 196 FESLMKQIQEYITGKKIFLVLDDVWDG-DYKKWDPFFSCLKNGHHESKILITTHDRSV 252 (807)
Q Consensus 196 ~~~~~~~l~~~l~~k~~LlVlDdv~~~-~~~~~~~l~~~l~~~~~gs~IliTTR~~~v 252 (807)
.+...-.+.+.+-.++-++||||+.+. |.+.-..+...+.....|..+|++||....
T Consensus 558 GQkQRiaiARAl~~~~~IliLDE~tSaLD~~te~~i~~~l~~~~~~~T~iiiaHrls~ 615 (1321)
T 4f4c_A 558 GQKQRIAIARALVRNPKILLLDEATSALDAESEGIVQQALDKAAKGRTTIIIAHRLST 615 (1321)
T ss_dssp HHHHHHHHHHHHTTCCSEEEEESTTTTSCTTTHHHHHHHHHHHHTTSEEEEECSCTTT
T ss_pred HHHHHHHHHHHHccCCCEEEEecccccCCHHHHHHHHHHHHHHhCCCEEEEEcccHHH
Confidence 344444577777778889999999765 333323355555443345566666766543
No 329
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=95.34 E-value=0.034 Score=59.15 Aligned_cols=110 Identities=13% Similarity=0.170 Sum_probs=58.0
Q ss_pred CceEEEEEccCCChHHHHHHHHHcCcccccccceEE-EEEeCCCCCHHHHHHHHHH--HcCCCCCCCccHHHHHHHHHHH
Q 047321 130 GLDVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVI-WVCVSNTFEEISVAKAIIE--GLGVSAFGLSEFESLMKQIQEY 206 (807)
Q Consensus 130 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~-wv~~~~~~~~~~~~~~i~~--~l~~~~~~~~~~~~~~~~l~~~ 206 (807)
...+++|+|+.|+||||+++.+... ........+ ++...-.+..... ..++. .++. +. ......++..
T Consensus 135 ~g~~i~ivG~~GsGKTTll~~l~~~--~~~~~~g~I~~~e~~~e~~~~~~-~~~v~Q~~~g~---~~---~~~~~~l~~~ 205 (372)
T 2ewv_A 135 KMGLILVTGPTGSGKSTTIASMIDY--INQTKSYHIITIEDPIEYVFKHK-KSIVNQREVGE---DT---KSFADALRAA 205 (372)
T ss_dssp SSEEEEEECSSSSSHHHHHHHHHHH--HHHHSCCEEEEEESSCCSCCCCS-SSEEEEEEBTT---TB---SCSHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhh--cCcCCCcEEEEecccHhhhhccC-ceEEEeeecCC---CH---HHHHHHHHHH
Confidence 4578999999999999999998752 211112233 3221110000000 00000 0000 11 1123467777
Q ss_pred HhCCceEEEEeCCCCCCccChHHHHHhhcCCCCCcEEEEEcCCHHHH
Q 047321 207 ITGKKIFLVLDDVWDGDYKKWDPFFSCLKNGHHESKILITTHDRSVA 253 (807)
Q Consensus 207 l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~IliTTR~~~v~ 253 (807)
+...+-+|++|++.+ .+........ ...|..|+.|++..++.
T Consensus 206 L~~~pd~illdE~~d--~e~~~~~l~~---~~~g~~vi~t~H~~~~~ 247 (372)
T 2ewv_A 206 LREDPDVIFVGEMRD--LETVETALRA---AETGHLVFGTLHTNTAI 247 (372)
T ss_dssp TTSCCSEEEESCCCS--HHHHHHHHHH---HTTTCEEEECCCCCSHH
T ss_pred hhhCcCEEEECCCCC--HHHHHHHHHH---HhcCCEEEEEECcchHH
Confidence 777888999999963 2333332222 23466789999876543
No 330
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=95.27 E-value=0.039 Score=68.65 Aligned_cols=60 Identities=13% Similarity=0.109 Sum_probs=39.3
Q ss_pred cHHHHHHHHHHHHhCCceEEEEeCCCCC-CccChHHHHHhhcCCCCCcEEEEEcCCHHHHH
Q 047321 195 EFESLMKQIQEYITGKKIFLVLDDVWDG-DYKKWDPFFSCLKNGHHESKILITTHDRSVAL 254 (807)
Q Consensus 195 ~~~~~~~~l~~~l~~k~~LlVlDdv~~~-~~~~~~~l~~~l~~~~~gs~IliTTR~~~v~~ 254 (807)
..+...-.+.+.+-.++-+||||++... |...-..+...+.....|..||++|++.....
T Consensus 1174 gGq~Qrv~iARal~~~p~iLiLDEpTs~lD~~~~~~i~~~l~~~~~~~tvi~isH~l~~i~ 1234 (1284)
T 3g5u_A 1174 GGQKQRIAIARALVRQPHILLLDEATSALDTESEKVVQEALDKAREGRTCIVIAHRLSTIQ 1234 (1284)
T ss_dssp HHHHHHHHHHHHHHHCCSSEEEESCSSSCCHHHHHHHHHHHHHHSSSSCEEEECSCTTGGG
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHhCCCCEEEEEecCHHHHH
Confidence 3444445577788778889999999765 44443445555544445667888888776543
No 331
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=95.25 E-value=0.027 Score=65.48 Aligned_cols=108 Identities=17% Similarity=0.206 Sum_probs=57.2
Q ss_pred ceEEEEEccCCChHHHHHHHHHcCcc--ccccc-----------ceEEEEEeCCCCCHHHHHHHHHHHcCCCCCCCccHH
Q 047321 131 LDVISLVGLGGIGKTTLAQLAYNNDE--VKRNF-----------EKVIWVCVSNTFEEISVAKAIIEGLGVSAFGLSEFE 197 (807)
Q Consensus 131 ~~vi~I~G~gGiGKTtLa~~v~~~~~--~~~~f-----------~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~ 197 (807)
..+++|+|++|+||||+.+.+..-.. ..+.| +. ++-.++-.. .+.. +.....
T Consensus 576 g~i~~I~GpNGsGKSTlLr~iagl~~~~~~G~~vpa~~~~i~~v~~-i~~~~~~~d-------~l~~-------g~S~~~ 640 (765)
T 1ewq_A 576 HELVLITGPNMAGKSTFLRQTALIALLAQVGSFVPAEEAHLPLFDG-IYTRIGASD-------DLAG-------GKSTFM 640 (765)
T ss_dssp SCEEEEESCSSSSHHHHHHHHHHHHHHHTTTCCBSSSEEEECCCSE-EEEECCC--------------------CCSHHH
T ss_pred CcEEEEECCCCCChHHHHHHHHhhhhhcccCceeehhccceeeHHH-hhccCCHHH-------HHHh-------cccHHH
Confidence 46899999999999999998753110 00111 11 111111000 0000 111111
Q ss_pred HHHHHHHHHH--hCCceEEEEeCC---CCC-CccCh-HHHHHhhcCCCCCcEEEEEcCCHHHHHH
Q 047321 198 SLMKQIQEYI--TGKKIFLVLDDV---WDG-DYKKW-DPFFSCLKNGHHESKILITTHDRSVALQ 255 (807)
Q Consensus 198 ~~~~~l~~~l--~~k~~LlVlDdv---~~~-~~~~~-~~l~~~l~~~~~gs~IliTTR~~~v~~~ 255 (807)
.-...+...+ ..++-|++||++ .+. |.... ..+...+.. .|..||++|++.+.+..
T Consensus 641 ~e~~~la~il~~a~~p~LlLLDEpgrGTs~lD~~~~~~~i~~~L~~--~g~~vl~~TH~~~l~~~ 703 (765)
T 1ewq_A 641 VEMEEVALILKEATENSLVLLDEVGRGTSSLDGVAIATAVAEALHE--RRAYTLFATHYFELTAL 703 (765)
T ss_dssp HHHHHHHHHHHHCCTTEEEEEESTTTTSCHHHHHHHHHHHHHHHHH--HTCEEEEECCCHHHHTC
T ss_pred HHHHHHHHHHHhccCCCEEEEECCCCCCCCcCHHHHHHHHHHHHHh--CCCEEEEEeCCHHHHHh
Confidence 1122344455 678999999999 332 21111 134444544 57889999999887653
No 332
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=95.23 E-value=0.011 Score=56.48 Aligned_cols=25 Identities=36% Similarity=0.481 Sum_probs=22.5
Q ss_pred CceEEEEEccCCChHHHHHHHHHcC
Q 047321 130 GLDVISLVGLGGIGKTTLAQLAYNN 154 (807)
Q Consensus 130 ~~~vi~I~G~gGiGKTtLa~~v~~~ 154 (807)
...+++|+|++|+|||||++.+...
T Consensus 8 ~g~~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 8 GGNILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp TTEEEEEEECTTSCHHHHHHHHHTC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhc
Confidence 4578999999999999999999873
No 333
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=95.18 E-value=0.046 Score=63.34 Aligned_cols=68 Identities=15% Similarity=0.213 Sum_probs=42.2
Q ss_pred cHHHHHHHHHHHHhCC---ceEEEEeCCCCC-CccChHHHHHhhcCC-CCCcEEEEEcCCHHHHHHhCCCceEeC
Q 047321 195 EFESLMKQIQEYITGK---KIFLVLDDVWDG-DYKKWDPFFSCLKNG-HHESKILITTHDRSVALQLGSIDIIPV 264 (807)
Q Consensus 195 ~~~~~~~~l~~~l~~k---~~LlVlDdv~~~-~~~~~~~l~~~l~~~-~~gs~IliTTR~~~v~~~~~~~~~~~l 264 (807)
..+...-.|.+.+..+ +-+|+||++... |...-..+...+... ..|..||++|++.+++.. ...++.+
T Consensus 546 gG~~qrv~iAraL~~~p~~p~llllDEPt~~LD~~~~~~i~~~l~~l~~~g~tvi~vtHd~~~~~~--~d~i~~l 618 (670)
T 3ux8_A 546 GGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNGDTVLVIEHNLDVIKT--ADYIIDL 618 (670)
T ss_dssp HHHHHHHHHHHHHHSCCCSCEEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHTT--CSEEEEE
T ss_pred HHHHHHHHHHHHHhhCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHh--CCEEEEe
Confidence 3444455577777554 469999999765 433344444444322 236789999999987643 3455555
No 334
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=95.18 E-value=0.08 Score=54.44 Aligned_cols=106 Identities=19% Similarity=0.172 Sum_probs=56.0
Q ss_pred hHHHHHHHHhCCCC-C-CCCCceEEEEEccCCChHHHHHHHHHcCcccccccceEEEEEeCCCCCHHH--HHHHHHHHcC
Q 047321 112 EKNELLSKLLCGSS-E-QQKGLDVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSNTFEEIS--VAKAIIEGLG 187 (807)
Q Consensus 112 ~~~~l~~~L~~~~~-~-~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~--~~~~i~~~l~ 187 (807)
-.++|.+.+..... . ......++.|+|++|+||||++..++.. ....-..+.++.. +.+.... -+...++..+
T Consensus 83 ~~~~l~~~l~~~~~~~~~~~~~~vi~ivG~~GsGKTTl~~~LA~~--l~~~g~kV~lv~~-D~~r~~a~eqL~~~~~~~g 159 (306)
T 1vma_A 83 LKEIILEILNFDTKLNVPPEPPFVIMVVGVNGTGKTTSCGKLAKM--FVDEGKSVVLAAA-DTFRAAAIEQLKIWGERVG 159 (306)
T ss_dssp HHHHHHHHTCSCCCCCCCSSSCEEEEEECCTTSSHHHHHHHHHHH--HHHTTCCEEEEEE-CTTCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhCCCCCCcccCCCCeEEEEEcCCCChHHHHHHHHHHH--HHhcCCEEEEEcc-ccccHHHHHHHHHHHHHcC
Confidence 34555555543210 0 0235689999999999999999998762 2221122444443 3333221 1233444443
Q ss_pred CCC---CCCccHH-HHHHHHHHHHhCCceEEEEeCCC
Q 047321 188 VSA---FGLSEFE-SLMKQIQEYITGKKIFLVLDDVW 220 (807)
Q Consensus 188 ~~~---~~~~~~~-~~~~~l~~~l~~k~~LlVlDdv~ 220 (807)
... ....+.. .....+.+.+....-++|+|.+-
T Consensus 160 l~~~~~~s~~~~~~v~~~al~~a~~~~~dvvIiDtpg 196 (306)
T 1vma_A 160 ATVISHSEGADPAAVAFDAVAHALARNKDVVIIDTAG 196 (306)
T ss_dssp CEEECCSTTCCHHHHHHHHHHHHHHTTCSEEEEEECC
T ss_pred CcEEecCCccCHHHHHHHHHHHHHhcCCCEEEEECCC
Confidence 321 1111222 22345666666677789999874
No 335
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=95.11 E-value=0.12 Score=53.80 Aligned_cols=25 Identities=40% Similarity=0.415 Sum_probs=22.5
Q ss_pred CCceEEEEEccCCChHHHHHHHHHc
Q 047321 129 KGLDVISLVGLGGIGKTTLAQLAYN 153 (807)
Q Consensus 129 ~~~~vi~I~G~gGiGKTtLa~~v~~ 153 (807)
....+++|+|++|+||||+++.++.
T Consensus 127 ~~g~vi~lvG~nGaGKTTll~~Lag 151 (328)
T 3e70_C 127 EKPYVIMFVGFNGSGKTTTIAKLAN 151 (328)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 4578999999999999999999876
No 336
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=95.04 E-value=0.025 Score=59.24 Aligned_cols=97 Identities=14% Similarity=0.095 Sum_probs=52.9
Q ss_pred HHHHHHHhCCCCCCCCCceEEEEEccCCChHHHHHHHHHcCcccc-cccceEEEEEeCCCCCHHHHHHHHHHHcCC----
Q 047321 114 NELLSKLLCGSSEQQKGLDVISLVGLGGIGKTTLAQLAYNNDEVK-RNFEKVIWVCVSNTFEEISVAKAIIEGLGV---- 188 (807)
Q Consensus 114 ~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~-~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~---- 188 (807)
-++++.+..-. .-..++|+|++|+|||||++.+.+..... ..+. ++++-+.+..... .++.+.+..
T Consensus 162 iraID~~~pi~-----rGQr~~IvG~sG~GKTtLl~~Iar~i~~~~~~v~-~I~~lIGER~~Ev---~~~~~~~~~~vV~ 232 (422)
T 3ice_A 162 ARVLDLASPIG-----RGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCV-LMVLLIDERPEEV---TEMQRLVKGEVVA 232 (422)
T ss_dssp HHHHHHHSCCB-----TTCEEEEECCSSSSHHHHHHHHHHHHHHHCTTSE-EEEEEESSCHHHH---HHHHTTCSSEEEE
T ss_pred ceeeeeeeeec-----CCcEEEEecCCCCChhHHHHHHHHHHhhcCCCee-EEEEEecCChHHH---HHHHHHhCeEEEE
Confidence 35666666532 45689999999999999999987621111 1222 3345555543221 223333311
Q ss_pred CCCCCccHHHH-----HHHHHHHH--hCCceEEEEeCC
Q 047321 189 SAFGLSEFESL-----MKQIQEYI--TGKKIFLVLDDV 219 (807)
Q Consensus 189 ~~~~~~~~~~~-----~~~l~~~l--~~k~~LlVlDdv 219 (807)
...+....... .-.+.+++ .|+.+||++||+
T Consensus 233 atadep~~~r~~~a~~alt~AEyfrd~G~dVLil~Dsl 270 (422)
T 3ice_A 233 STFDEPASRHVQVAEMVIEKAKRLVEHKKDVIILLDSI 270 (422)
T ss_dssp ECTTSCHHHHHHHHHHHHHHHHHHHHTSCEEEEEEECH
T ss_pred eCCCCCHHHHHHHHHHHHHHHHHHHhcCCCEEEEEeCc
Confidence 11111111111 11234444 589999999998
No 337
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=94.95 E-value=0.013 Score=55.43 Aligned_cols=24 Identities=17% Similarity=0.353 Sum_probs=21.4
Q ss_pred CceEEEEEccCCChHHHHHHHHHc
Q 047321 130 GLDVISLVGLGGIGKTTLAQLAYN 153 (807)
Q Consensus 130 ~~~vi~I~G~gGiGKTtLa~~v~~ 153 (807)
..++++|+|++|+|||||++.+..
T Consensus 4 ~g~~i~i~GpsGsGKSTL~~~L~~ 27 (180)
T 1kgd_A 4 MRKTLVLLGAHGVGRRHIKNTLIT 27 (180)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHh
Confidence 346899999999999999999876
No 338
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=94.88 E-value=0.045 Score=64.83 Aligned_cols=47 Identities=19% Similarity=0.189 Sum_probs=29.7
Q ss_pred hCCceEEEEeCCCCC-CccChHHHH-HhhcC--CCCCcEEEEEcCCHHHHH
Q 047321 208 TGKKIFLVLDDVWDG-DYKKWDPFF-SCLKN--GHHESKILITTHDRSVAL 254 (807)
Q Consensus 208 ~~k~~LlVlDdv~~~-~~~~~~~l~-~~l~~--~~~gs~IliTTR~~~v~~ 254 (807)
..++-|++||++... +...-..+. ..+.. ...|+.||++|++.+++.
T Consensus 750 a~~p~LlLLDEP~~GlD~~~~~~i~~~il~~L~~~~g~tvl~vTH~~el~~ 800 (918)
T 3thx_B 750 ATSQSLVILDELGRGTSTHDGIAIAYATLEYFIRDVKSLTLFVTHYPPVCE 800 (918)
T ss_dssp CCTTCEEEEESTTTTSCHHHHHHHHHHHHHHHHHTTCCEEEEECSCGGGGG
T ss_pred ccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHHhcCCeEEEEeCcHHHHH
Confidence 568889999999765 322222232 22221 135789999999987654
No 339
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=94.82 E-value=0.015 Score=56.18 Aligned_cols=23 Identities=22% Similarity=0.362 Sum_probs=21.0
Q ss_pred ceEEEEEccCCChHHHHHHHHHc
Q 047321 131 LDVISLVGLGGIGKTTLAQLAYN 153 (807)
Q Consensus 131 ~~vi~I~G~gGiGKTtLa~~v~~ 153 (807)
..+++|+|++|+|||||++.+..
T Consensus 7 g~ii~l~Gp~GsGKSTl~~~L~~ 29 (205)
T 3tr0_A 7 ANLFIISAPSGAGKTSLVRALVK 29 (205)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHH
T ss_pred CcEEEEECcCCCCHHHHHHHHHh
Confidence 46899999999999999999875
No 340
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=94.77 E-value=0.057 Score=63.26 Aligned_cols=66 Identities=14% Similarity=0.115 Sum_probs=42.9
Q ss_pred HHHHHHHHHHHhCC---ceEEEEeCCCCC-CccChHHHHHhhcCC-CCCcEEEEEcCCHHHHHHhCCCceEeC
Q 047321 197 ESLMKQIQEYITGK---KIFLVLDDVWDG-DYKKWDPFFSCLKNG-HHESKILITTHDRSVALQLGSIDIIPV 264 (807)
Q Consensus 197 ~~~~~~l~~~l~~k---~~LlVlDdv~~~-~~~~~~~l~~~l~~~-~~gs~IliTTR~~~v~~~~~~~~~~~l 264 (807)
+...-.|.+.+..+ +-++|||+.... |......+...+... ..|..||++|++.++. .. ...++.+
T Consensus 735 ekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~tVIvisHdl~~i-~~-aDrii~L 805 (842)
T 2vf7_A 735 EAQRIKLATELRRSGRGGTVYVLDEPTTGLHPADVERLQRQLVKLVDAGNTVIAVEHKMQVV-AA-SDWVLDI 805 (842)
T ss_dssp HHHHHHHHHTTSSCCSSCEEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHHH-TT-CSEEEEE
T ss_pred HHHHHHHHHHHHhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHH-Hh-CCEEEEE
Confidence 33344466666654 689999999765 444455555554432 3467899999999887 33 4456666
No 341
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=94.77 E-value=0.018 Score=55.50 Aligned_cols=24 Identities=42% Similarity=0.386 Sum_probs=22.2
Q ss_pred CceEEEEEccCCChHHHHHHHHHc
Q 047321 130 GLDVISLVGLGGIGKTTLAQLAYN 153 (807)
Q Consensus 130 ~~~vi~I~G~gGiGKTtLa~~v~~ 153 (807)
...+|+|+|++|+||||+|+.+..
T Consensus 24 ~g~~i~l~G~sGsGKSTl~~~La~ 47 (200)
T 3uie_A 24 KGCVIWVTGLSGSGKSTLACALNQ 47 (200)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 568999999999999999999986
No 342
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=94.76 E-value=0.012 Score=55.99 Aligned_cols=22 Identities=32% Similarity=0.501 Sum_probs=20.3
Q ss_pred eEEEEEccCCChHHHHHHHHHc
Q 047321 132 DVISLVGLGGIGKTTLAQLAYN 153 (807)
Q Consensus 132 ~vi~I~G~gGiGKTtLa~~v~~ 153 (807)
++++|+|++|+|||||++.+..
T Consensus 2 ~ii~l~GpsGaGKsTl~~~L~~ 23 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLLKKLFA 23 (186)
T ss_dssp CCEEEESSSSSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHh
Confidence 5789999999999999999985
No 343
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=94.74 E-value=0.018 Score=52.94 Aligned_cols=24 Identities=33% Similarity=0.266 Sum_probs=21.7
Q ss_pred CceEEEEEccCCChHHHHHHHHHc
Q 047321 130 GLDVISLVGLGGIGKTTLAQLAYN 153 (807)
Q Consensus 130 ~~~vi~I~G~gGiGKTtLa~~v~~ 153 (807)
.-.+++|+|+.|+|||||++.++.
T Consensus 32 ~Ge~v~L~G~nGaGKTTLlr~l~g 55 (158)
T 1htw_A 32 KAIMVYLNGDLGAGKTTLTRGMLQ 55 (158)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHH
Confidence 457999999999999999999875
No 344
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=94.73 E-value=0.023 Score=63.70 Aligned_cols=118 Identities=17% Similarity=0.103 Sum_probs=62.3
Q ss_pred CceEEEEEccCCChHHHHHHHHH-cCcccccccceEEEEEeCCCCCHHHHHHHHHHHcCC----------------CC--
Q 047321 130 GLDVISLVGLGGIGKTTLAQLAY-NNDEVKRNFEKVIWVCVSNTFEEISVAKAIIEGLGV----------------SA-- 190 (807)
Q Consensus 130 ~~~vi~I~G~gGiGKTtLa~~v~-~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~----------------~~-- 190 (807)
.-.+++|+|++|+|||||++.+. . .....-...++++.... .... ....+.++. ..
T Consensus 38 ~Ge~~~l~G~nGsGKSTL~~~~ll~--Gl~~~~~g~i~v~g~~~--~~~~-~~~~~~~g~~~q~~~~~~~l~~~~~~~~~ 112 (525)
T 1tf7_A 38 IGRSTLVSGTSGTGKTLFSIQFLYN--GIIEFDEPGVFVTFEET--PQDI-IKNARSFGWDLAKLVDEGKLFILDASPDP 112 (525)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHH--HHHHHCCCEEEEESSSC--HHHH-HHHHGGGTCCHHHHHHTTSEEEEECCCCS
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHH--HHHhCCCCEEEEEEeCC--HHHH-HHHHHHcCCChHHhhccCcEEEEecCccc
Confidence 45799999999999999999952 2 11111235667764431 2111 111111110 00
Q ss_pred -----CCCccHHHHHHHHHHHH-hCCceEEEEeCCCCCC------ccChHHHHHhhcCC-CCCcEEEEEcCCHHH
Q 047321 191 -----FGLSEFESLMKQIQEYI-TGKKIFLVLDDVWDGD------YKKWDPFFSCLKNG-HHESKILITTHDRSV 252 (807)
Q Consensus 191 -----~~~~~~~~~~~~l~~~l-~~k~~LlVlDdv~~~~------~~~~~~l~~~l~~~-~~gs~IliTTR~~~v 252 (807)
....+.+.....+...+ .+++-++|||.+.... ...-..+...+... ..|..||+||++.+.
T Consensus 113 ~~~~~l~~~~l~~~~~~~~~~LS~g~~~~lilDe~t~~~~~~~lD~~~~~~l~~ll~~l~~~g~tvl~itH~~~~ 187 (525)
T 1tf7_A 113 EGQEVVGGFDLSALIERINYAIQKYRARRVSIDSVTSVFQQYDASSVVRRELFRLVARLKQIGATTVMTTERIEE 187 (525)
T ss_dssp SCCSCCSSHHHHHHHHHHHHHHHHHTCSEEEEECSTTTSTTTCCHHHHHHHHHHHHHHHHHHTCEEEEEEECSSS
T ss_pred chhhhhcccCHHHHHHHHHHHHHHcCCCEEEECCHHHHHHhcCCHHHHHHHHHHHHHHHHHCCCEEEEEecCCCC
Confidence 01112344445555555 4788899999985421 11222333333221 247789999987643
No 345
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=94.69 E-value=0.014 Score=54.83 Aligned_cols=22 Identities=23% Similarity=0.283 Sum_probs=20.5
Q ss_pred eEEEEEccCCChHHHHHHHHHc
Q 047321 132 DVISLVGLGGIGKTTLAQLAYN 153 (807)
Q Consensus 132 ~vi~I~G~gGiGKTtLa~~v~~ 153 (807)
.+|.|.|++|+||||+|+.+..
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~ 25 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQS 25 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999999986
No 346
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=94.68 E-value=0.015 Score=54.38 Aligned_cols=20 Identities=40% Similarity=0.685 Sum_probs=18.8
Q ss_pred eEEEEEccCCChHHHHHHHH
Q 047321 132 DVISLVGLGGIGKTTLAQLA 151 (807)
Q Consensus 132 ~vi~I~G~gGiGKTtLa~~v 151 (807)
.+|+|.|++|+||||+|+.+
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 47899999999999999999
No 347
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=94.65 E-value=0.52 Score=50.76 Aligned_cols=24 Identities=29% Similarity=0.390 Sum_probs=21.4
Q ss_pred CceEEEEEccCCChHHHHHHHHHc
Q 047321 130 GLDVISLVGLGGIGKTTLAQLAYN 153 (807)
Q Consensus 130 ~~~vi~I~G~gGiGKTtLa~~v~~ 153 (807)
...+|.++|.+|+||||++..++.
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~ 122 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLAR 122 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHHH
Confidence 478999999999999999988765
No 348
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=94.65 E-value=0.018 Score=55.93 Aligned_cols=24 Identities=42% Similarity=0.310 Sum_probs=21.9
Q ss_pred CceEEEEEccCCChHHHHHHHHHc
Q 047321 130 GLDVISLVGLGGIGKTTLAQLAYN 153 (807)
Q Consensus 130 ~~~vi~I~G~gGiGKTtLa~~v~~ 153 (807)
...+|+|+|++|+|||||++.+..
T Consensus 5 ~~~~i~i~G~~GsGKSTl~~~l~~ 28 (211)
T 3asz_A 5 KPFVIGIAGGTASGKTTLAQALAR 28 (211)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHH
T ss_pred CcEEEEEECCCCCCHHHHHHHHHH
Confidence 557999999999999999999876
No 349
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=94.62 E-value=0.015 Score=54.21 Aligned_cols=22 Identities=27% Similarity=0.138 Sum_probs=20.2
Q ss_pred eEEEEEccCCChHHHHHHHHHc
Q 047321 132 DVISLVGLGGIGKTTLAQLAYN 153 (807)
Q Consensus 132 ~vi~I~G~gGiGKTtLa~~v~~ 153 (807)
.+|+|.|+.|+||||+|+.+..
T Consensus 2 ~~i~l~G~~GsGKsT~~~~L~~ 23 (173)
T 3kb2_A 2 TLIILEGPDCCFKSTVAAKLSK 23 (173)
T ss_dssp CEEEEECSSSSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4789999999999999999976
No 350
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=94.60 E-value=0.025 Score=63.41 Aligned_cols=115 Identities=17% Similarity=0.101 Sum_probs=60.3
Q ss_pred CceEEEEEccCCChHHHHHHHHHcCcccccccceEEEEEeCCCCCHHHHHHHHHHHcCCC---------------CCCCc
Q 047321 130 GLDVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSNTFEEISVAKAIIEGLGVS---------------AFGLS 194 (807)
Q Consensus 130 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~---------------~~~~~ 194 (807)
.-.+++|+|++|+|||||++.++....... ..++++..... ...+...+ ..++.. ....-
T Consensus 280 ~G~i~~i~G~~GsGKSTLl~~l~g~~~~~G--~~vi~~~~ee~--~~~l~~~~-~~~g~~~~~~~~~g~~~~~~~~p~~L 354 (525)
T 1tf7_A 280 KDSIILATGATGTGKTLLVSRFVENACANK--ERAILFAYEES--RAQLLRNA-YSWGMDFEEMERQNLLKIVCAYPESA 354 (525)
T ss_dssp SSCEEEEEECTTSSHHHHHHHHHHHHHTTT--CCEEEEESSSC--HHHHHHHH-HTTSCCHHHHHHTTSEEECCCCGGGS
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHhCC--CCEEEEEEeCC--HHHHHHHH-HHcCCCHHHHHhCCCEEEEEeccccC
Confidence 557999999999999999999875322111 12345543322 23333222 112111 01111
Q ss_pred cHHH-HHHHHHHHHhCCceEEEEeCCCCC-Ccc-----ChHHHHHhhcC-CCCCcEEEEEcCCH
Q 047321 195 EFES-LMKQIQEYITGKKIFLVLDDVWDG-DYK-----KWDPFFSCLKN-GHHESKILITTHDR 250 (807)
Q Consensus 195 ~~~~-~~~~l~~~l~~k~~LlVlDdv~~~-~~~-----~~~~l~~~l~~-~~~gs~IliTTR~~ 250 (807)
+..+ ....+...+..++-++|+| .... +.. ....+...+.. ...|..||+||++.
T Consensus 355 S~g~~q~~~~a~~l~~~p~llilD-p~~~Ld~~~~~~~~~~~i~~ll~~l~~~g~tvilvsh~~ 417 (525)
T 1tf7_A 355 GLEDHLQIIKSEINDFKPARIAID-SLSALARGVSNNAFRQFVIGVTGYAKQEEITGLFTNTSD 417 (525)
T ss_dssp CHHHHHHHHHHHHHTTCCSEEEEE-CHHHHTSSSCHHHHHHHHHHHHHHHHHTTCEEEEEEECS
T ss_pred CHHHHHHHHHHHHHhhCCCEEEEc-ChHHHHhhCChHHHHHHHHHHHHHHHhCCCEEEEEECcc
Confidence 2333 3344556667888999999 4221 222 22223222221 13467799998865
No 351
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=94.58 E-value=0.016 Score=55.68 Aligned_cols=24 Identities=38% Similarity=0.389 Sum_probs=21.5
Q ss_pred CceEEEEEccCCChHHHHHHHHHc
Q 047321 130 GLDVISLVGLGGIGKTTLAQLAYN 153 (807)
Q Consensus 130 ~~~vi~I~G~gGiGKTtLa~~v~~ 153 (807)
...+|+|+|++|+||||+|+.+..
T Consensus 24 ~~~~i~l~G~~GsGKsTl~~~La~ 47 (199)
T 3vaa_A 24 AMVRIFLTGYMGAGKTTLGKAFAR 47 (199)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHH
Confidence 346899999999999999999986
No 352
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=94.56 E-value=0.0032 Score=59.92 Aligned_cols=22 Identities=23% Similarity=0.049 Sum_probs=18.5
Q ss_pred eEEEEEccCCChHHHHHHHHHc
Q 047321 132 DVISLVGLGGIGKTTLAQLAYN 153 (807)
Q Consensus 132 ~vi~I~G~gGiGKTtLa~~v~~ 153 (807)
.++.|+|+.|+||||++..++.
T Consensus 4 ~i~vi~G~~gsGKTT~ll~~~~ 25 (184)
T 2orw_A 4 KLTVITGPMYSGKTTELLSFVE 25 (184)
T ss_dssp CEEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 5889999999999999955544
No 353
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=94.56 E-value=0.019 Score=54.68 Aligned_cols=22 Identities=23% Similarity=0.391 Sum_probs=20.3
Q ss_pred eEEEEEccCCChHHHHHHHHHc
Q 047321 132 DVISLVGLGGIGKTTLAQLAYN 153 (807)
Q Consensus 132 ~vi~I~G~gGiGKTtLa~~v~~ 153 (807)
.+++|+|++|+||||+++.+..
T Consensus 3 ~ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 3 KLYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHhc
Confidence 5889999999999999999975
No 354
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=94.53 E-value=0.019 Score=55.68 Aligned_cols=25 Identities=28% Similarity=0.453 Sum_probs=22.2
Q ss_pred CceEEEEEccCCChHHHHHHHHHcC
Q 047321 130 GLDVISLVGLGGIGKTTLAQLAYNN 154 (807)
Q Consensus 130 ~~~vi~I~G~gGiGKTtLa~~v~~~ 154 (807)
...+|+|+|++|+|||||++.+...
T Consensus 7 ~g~~i~l~GpsGsGKsTl~~~L~~~ 31 (208)
T 3tau_A 7 RGLLIVLSGPSGVGKGTVREAVFKD 31 (208)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHS
T ss_pred CCcEEEEECcCCCCHHHHHHHHHhh
Confidence 4579999999999999999999863
No 355
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=94.53 E-value=0.019 Score=55.72 Aligned_cols=24 Identities=25% Similarity=0.313 Sum_probs=21.7
Q ss_pred CceEEEEEccCCChHHHHHHHHHc
Q 047321 130 GLDVISLVGLGGIGKTTLAQLAYN 153 (807)
Q Consensus 130 ~~~vi~I~G~gGiGKTtLa~~v~~ 153 (807)
.-.+++|+|++|+|||||++.+..
T Consensus 19 ~Gei~~l~GpnGsGKSTLl~~l~g 42 (207)
T 1znw_A 19 VGRVVVLSGPSAVGKSTVVRCLRE 42 (207)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHh
Confidence 457999999999999999999875
No 356
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=94.53 E-value=0.015 Score=54.49 Aligned_cols=22 Identities=36% Similarity=0.410 Sum_probs=20.4
Q ss_pred eEEEEEccCCChHHHHHHHHHc
Q 047321 132 DVISLVGLGGIGKTTLAQLAYN 153 (807)
Q Consensus 132 ~vi~I~G~gGiGKTtLa~~v~~ 153 (807)
.+|+|+|++|+||||+++.+..
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~ 26 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQ 26 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999999986
No 357
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=94.52 E-value=0.019 Score=55.36 Aligned_cols=24 Identities=29% Similarity=0.429 Sum_probs=21.8
Q ss_pred CceEEEEEccCCChHHHHHHHHHc
Q 047321 130 GLDVISLVGLGGIGKTTLAQLAYN 153 (807)
Q Consensus 130 ~~~vi~I~G~gGiGKTtLa~~v~~ 153 (807)
...+|+|+|++|+||||+++.+..
T Consensus 28 ~g~~i~l~G~~GsGKSTl~~~L~~ 51 (200)
T 4eun_A 28 PTRHVVVMGVSGSGKTTIAHGVAD 51 (200)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 457999999999999999999976
No 358
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=94.49 E-value=0.029 Score=57.38 Aligned_cols=40 Identities=28% Similarity=0.377 Sum_probs=28.2
Q ss_pred HHHHHHHHhCCCCCCCCCceEEEEEccCCChHHHHHHHHHc
Q 047321 113 KNELLSKLLCGSSEQQKGLDVISLVGLGGIGKTTLAQLAYN 153 (807)
Q Consensus 113 ~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 153 (807)
+++++..++..... .....+|.|.|++|+||||+|+.+..
T Consensus 16 ~~~~~~~~l~~~~~-~~~~~livl~G~sGsGKSTla~~L~~ 55 (287)
T 1gvn_B 16 LNDNLEELIQGKKA-VESPTAFLLGGQPGSGKTSLRSAIFE 55 (287)
T ss_dssp HHHHHHHHHTTCCC-CSSCEEEEEECCTTSCTHHHHHHHHH
T ss_pred HHHHHHHHhccccC-CCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 44444444433221 34567899999999999999999976
No 359
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=94.49 E-value=0.021 Score=58.45 Aligned_cols=25 Identities=32% Similarity=0.288 Sum_probs=22.5
Q ss_pred CCceEEEEEccCCChHHHHHHHHHc
Q 047321 129 KGLDVISLVGLGGIGKTTLAQLAYN 153 (807)
Q Consensus 129 ~~~~vi~I~G~gGiGKTtLa~~v~~ 153 (807)
....+|+|+|+.|+||||||+.+..
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~~ 53 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIYN 53 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 4678999999999999999998875
No 360
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=94.48 E-value=0.02 Score=57.56 Aligned_cols=86 Identities=20% Similarity=0.208 Sum_probs=58.4
Q ss_pred cCcccccccccCCCccccchhhhccccCCCCCCcccEEEEccCCCCCCCcccccCCC--CccEEeeccCcccccccc---
Q 047321 675 AFPKLKSLEIDGMKELEEWNYRITRKENISIMPRLSSLQIMNCRKLKALPDYLLQTI--ALQKLSIYSCDLLEELPI--- 749 (807)
Q Consensus 675 ~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~lp~~l~~l~--~L~~L~l~~c~~l~~lP~--- 749 (807)
.+|+|+.|+|+++ .+..++. + +..+..+|+|+.|+|+++ +++.+. .+..+. +|++|++++++--..+|.
T Consensus 168 ~l~~L~~L~Ls~N-~l~~l~~-l--~~~~~~l~~L~~L~Ls~N-~i~~~~-~l~~l~~l~L~~L~L~~Npl~~~~~~~~~ 241 (267)
T 3rw6_A 168 NIPELLSLNLSNN-RLYRLDD-M--SSIVQKAPNLKILNLSGN-ELKSER-ELDKIKGLKLEELWLDGNSLCDTFRDQST 241 (267)
T ss_dssp HCTTCCEEECTTS-CCCCCGG-G--TTHHHHSTTCCEEECTTS-CCCSGG-GGGGGTTSCCSEEECTTSTTGGGCSSHHH
T ss_pred hCCCCCEEECCCC-CCCCCcc-c--hhHHhhCCCCCEEECCCC-ccCCch-hhhhcccCCcceEEccCCcCccccCcchh
Confidence 6899999999984 6666542 0 112346999999999988 777763 344455 999999999875444540
Q ss_pred cccccCCCCCCCCeeee
Q 047321 750 LEDRRTTDIPRLSSLAI 766 (807)
Q Consensus 750 ~~~~~~~~l~~L~~L~i 766 (807)
.....+..+|+|+.|+=
T Consensus 242 y~~~il~~~P~L~~LDg 258 (267)
T 3rw6_A 242 YISAIRERFPKLLRLDG 258 (267)
T ss_dssp HHHHHHHHCTTCCEESS
T ss_pred HHHHHHHHCcccCeECC
Confidence 00123456788887753
No 361
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=94.44 E-value=0.24 Score=51.22 Aligned_cols=53 Identities=15% Similarity=0.106 Sum_probs=37.1
Q ss_pred CceEEEEEccCCChHHHHHHHHHcCcccccccceEEEEEeCCCCCHHHHHHHHHHHc
Q 047321 130 GLDVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSNTFEEISVAKAIIEGL 186 (807)
Q Consensus 130 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l 186 (807)
.-.++.|.|.+|+||||||..++.+..... ..++|++.. .+..++...++...
T Consensus 67 ~G~l~li~G~pG~GKTtl~l~ia~~~a~~g--~~vl~~slE--~s~~~l~~R~~~~~ 119 (315)
T 3bh0_A 67 RRNFVLIAARPSMGKTAFALKQAKNMSDND--DVVNLHSLE--MGKKENIKRLIVTA 119 (315)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHHHHHTTT--CEEEEEESS--SCHHHHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHHcC--CeEEEEECC--CCHHHHHHHHHHHH
Confidence 557999999999999999988875322222 457777654 55667766666543
No 362
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=94.43 E-value=0.016 Score=55.79 Aligned_cols=23 Identities=30% Similarity=0.462 Sum_probs=20.3
Q ss_pred ceEEEEEccCCChHHHHHHHHHc
Q 047321 131 LDVISLVGLGGIGKTTLAQLAYN 153 (807)
Q Consensus 131 ~~vi~I~G~gGiGKTtLa~~v~~ 153 (807)
.++++|+|++|+|||||++.+..
T Consensus 4 g~~i~lvGpsGaGKSTLl~~L~~ 26 (198)
T 1lvg_A 4 PRPVVLSGPSGAGKSTLLKKLFQ 26 (198)
T ss_dssp -CCEEEECCTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHh
Confidence 45899999999999999999875
No 363
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=94.39 E-value=0.022 Score=62.90 Aligned_cols=42 Identities=24% Similarity=0.223 Sum_probs=35.8
Q ss_pred ccccccchHHHHHHHHhCCCCCCCCCceEEEEEccCCChHHHHHHHHHcC
Q 047321 105 GVCGRVDEKNELLSKLLCGSSEQQKGLDVISLVGLGGIGKTTLAQLAYNN 154 (807)
Q Consensus 105 ~~vGR~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 154 (807)
.++|+++.++.+...+.. ..-|.|+|++|+|||+||+.+++.
T Consensus 23 ~ivGq~~~i~~l~~al~~--------~~~VLL~GpPGtGKT~LAraLa~~ 64 (500)
T 3nbx_X 23 GLYERSHAIRLCLLAALS--------GESVFLLGPPGIAKSLIARRLKFA 64 (500)
T ss_dssp TCSSCHHHHHHHHHHHHH--------TCEEEEECCSSSSHHHHHHHGGGG
T ss_pred hhHHHHHHHHHHHHHHhc--------CCeeEeecCchHHHHHHHHHHHHH
Confidence 589999999888888763 236889999999999999999973
No 364
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=94.36 E-value=0.021 Score=53.74 Aligned_cols=22 Identities=32% Similarity=0.403 Sum_probs=20.5
Q ss_pred eEEEEEccCCChHHHHHHHHHc
Q 047321 132 DVISLVGLGGIGKTTLAQLAYN 153 (807)
Q Consensus 132 ~vi~I~G~gGiGKTtLa~~v~~ 153 (807)
.+|.|.|++|+||||+|+.+..
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 5799999999999999999986
No 365
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=94.34 E-value=0.29 Score=52.71 Aligned_cols=24 Identities=42% Similarity=0.308 Sum_probs=21.7
Q ss_pred CceEEEEEccCCChHHHHHHHHHc
Q 047321 130 GLDVISLVGLGGIGKTTLAQLAYN 153 (807)
Q Consensus 130 ~~~vi~I~G~gGiGKTtLa~~v~~ 153 (807)
...+|.++|++|+||||++..++.
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~ 119 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAY 119 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999999988875
No 366
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=94.31 E-value=0.026 Score=52.83 Aligned_cols=24 Identities=25% Similarity=0.443 Sum_probs=21.6
Q ss_pred CceEEEEEccCCChHHHHHHHHHc
Q 047321 130 GLDVISLVGLGGIGKTTLAQLAYN 153 (807)
Q Consensus 130 ~~~vi~I~G~gGiGKTtLa~~v~~ 153 (807)
...+|+|+|++|+||||+++.+..
T Consensus 7 ~g~~i~l~G~~GsGKSTl~~~l~~ 30 (175)
T 1knq_A 7 DHHIYVLMGVSGSGKSAVASEVAH 30 (175)
T ss_dssp TSEEEEEECSTTSCHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHH
Confidence 457899999999999999999875
No 367
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=94.29 E-value=0.1 Score=56.85 Aligned_cols=43 Identities=30% Similarity=0.404 Sum_probs=29.4
Q ss_pred CCceEEEEEccCCChHHHHHHHHHcCcccccccceEEEEEeCCCCC
Q 047321 129 KGLDVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSNTFE 174 (807)
Q Consensus 129 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~ 174 (807)
....+++|+|.+|+|||||++.++.- .+ ...+.+++.-.+.+.
T Consensus 291 ~~GeVI~LVGpNGSGKTTLl~~LAgl--l~-~~~G~V~l~g~D~~r 333 (503)
T 2yhs_A 291 KAPFVILMVGVNGVGKTTTIGKLARQ--FE-QQGKSVMLAAGDTFR 333 (503)
T ss_dssp CTTEEEEEECCTTSSHHHHHHHHHHH--HH-HTTCCEEEECCCTTC
T ss_pred cCCeEEEEECCCcccHHHHHHHHHHH--hh-hcCCeEEEecCcccc
Confidence 35679999999999999999998762 22 123445554444444
No 368
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=94.28 E-value=0.033 Score=58.04 Aligned_cols=45 Identities=22% Similarity=0.191 Sum_probs=31.3
Q ss_pred ccccchHHHHHHHHhCCCCCCCCCceEEEEEccCCChHHHHHHHHHc
Q 047321 107 CGRVDEKNELLSKLLCGSSEQQKGLDVISLVGLGGIGKTTLAQLAYN 153 (807)
Q Consensus 107 vGR~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 153 (807)
|+-+.-.+++++.+...-. .+....|.|+|+.|+||||+++.++.
T Consensus 2 ~~~~~L~~~il~~l~~~i~--~g~~~~i~l~G~~G~GKTTl~~~la~ 46 (359)
T 2ga8_A 2 VDTHKLADDVLQLLDNRIE--DNYRVCVILVGSPGSGKSTIAEELCQ 46 (359)
T ss_dssp CCHHHHHHHHHHHHHHTTT--TCSCEEEEEECCTTSSHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHhc--cCCeeEEEEECCCCCcHHHHHHHHHH
Confidence 3444555666666642221 23566799999999999999998876
No 369
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=94.25 E-value=0.086 Score=57.07 Aligned_cols=98 Identities=17% Similarity=0.114 Sum_probs=54.3
Q ss_pred HHHHHhCCCCCCCCCceEEEEEccCCChHHHHHHHHHcCcccccccceEEEEEeCCCCC-HHHHHHHHHHHcC-------
Q 047321 116 LLSKLLCGSSEQQKGLDVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSNTFE-EISVAKAIIEGLG------- 187 (807)
Q Consensus 116 l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~-~~~~~~~i~~~l~------- 187 (807)
.++.|..-. +-..++|+|.+|+|||||++.+..+... .+-+..+++-+.+..+ ..+++.++.+.-.
T Consensus 141 ~ID~L~pi~-----kGq~~~i~G~sGvGKTtL~~~l~~~~~~-~~~~i~V~~~iGerttev~el~~~l~~~~~l~~tvvv 214 (473)
T 1sky_E 141 VVDLLAPYI-----KGGKIGLFGGAGVGKTVLIQELIHNIAQ-EHGGISVFAGVGERTREGNDLYHEMKDSGVISKTAMV 214 (473)
T ss_dssp HHHHHSCEE-----TTCEEEEECCSSSCHHHHHHHHHHHHHH-HTCCCEEEEEESSCHHHHHHHHHHHHHTSGGGGEEEE
T ss_pred HHHHHhhhc-----cCCEEEEECCCCCCccHHHHHHHhhhhh-ccCcEEEEeeeccCchHHHHHHHHhhhcCCcceeEEE
Confidence 566665432 2346899999999999999998874222 1223455666655543 3344444433210
Q ss_pred -CCCCCCccHHH----HHHHHHHHH---hCCceEEEEeCC
Q 047321 188 -VSAFGLSEFES----LMKQIQEYI---TGKKIFLVLDDV 219 (807)
Q Consensus 188 -~~~~~~~~~~~----~~~~l~~~l---~~k~~LlVlDdv 219 (807)
....+...... ..-.+.+++ .+++.|+++||+
T Consensus 215 ~~~~~d~pg~r~~~~~~~ltiAEyFrd~~G~~VLl~~D~i 254 (473)
T 1sky_E 215 FGQMNEPPGARMRVALTGLTMAEYFRDEQGQDGLLFIDNI 254 (473)
T ss_dssp EECTTSCHHHHHHHHHHHHHHHHHHHHHSCCEEEEEEECT
T ss_pred EEcCCCCHHHHHHHHHHHHHHHHHHHHhcCCcEEEEeccH
Confidence 01111111111 112345554 478999999999
No 370
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=94.21 E-value=0.025 Score=54.63 Aligned_cols=25 Identities=28% Similarity=0.425 Sum_probs=21.9
Q ss_pred CceEEEEEccCCChHHHHHHHHHcC
Q 047321 130 GLDVISLVGLGGIGKTTLAQLAYNN 154 (807)
Q Consensus 130 ~~~vi~I~G~gGiGKTtLa~~v~~~ 154 (807)
...+|+|+|++|+||||+++.+...
T Consensus 5 ~g~~i~l~G~~GsGKSTl~~~L~~~ 29 (207)
T 2j41_A 5 KGLLIVLSGPSGVGKGTVRKRIFED 29 (207)
T ss_dssp CCCEEEEECSTTSCHHHHHHHHHHC
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHh
Confidence 3468999999999999999999763
No 371
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=94.19 E-value=0.026 Score=58.41 Aligned_cols=25 Identities=24% Similarity=0.248 Sum_probs=22.5
Q ss_pred CCceEEEEEccCCChHHHHHHHHHc
Q 047321 129 KGLDVISLVGLGGIGKTTLAQLAYN 153 (807)
Q Consensus 129 ~~~~vi~I~G~gGiGKTtLa~~v~~ 153 (807)
....+|+|+|++|+|||||++.+..
T Consensus 88 ~~g~ivgI~G~sGsGKSTL~~~L~g 112 (312)
T 3aez_A 88 PVPFIIGVAGSVAVGKSTTARVLQA 112 (312)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCCEEEEEECCCCchHHHHHHHHHh
Confidence 3578999999999999999999875
No 372
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=94.12 E-value=0.023 Score=53.83 Aligned_cols=23 Identities=39% Similarity=0.522 Sum_probs=20.9
Q ss_pred ceEEEEEccCCChHHHHHHHHHc
Q 047321 131 LDVISLVGLGGIGKTTLAQLAYN 153 (807)
Q Consensus 131 ~~vi~I~G~gGiGKTtLa~~v~~ 153 (807)
.+.|.|+|+.|+||||+|+.+..
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~ 27 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAK 27 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 45789999999999999999986
No 373
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=94.12 E-value=0.021 Score=55.82 Aligned_cols=24 Identities=29% Similarity=0.473 Sum_probs=21.4
Q ss_pred CceEEEEEccCCChHHHHHHHHHc
Q 047321 130 GLDVISLVGLGGIGKTTLAQLAYN 153 (807)
Q Consensus 130 ~~~vi~I~G~gGiGKTtLa~~v~~ 153 (807)
...+++|+|++|+|||||++.+..
T Consensus 22 ~G~~~~lvGpsGsGKSTLl~~L~g 45 (218)
T 1z6g_A 22 NIYPLVICGPSGVGKGTLIKKLLN 45 (218)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHh
Confidence 446899999999999999999876
No 374
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=94.11 E-value=0.025 Score=55.20 Aligned_cols=24 Identities=21% Similarity=0.227 Sum_probs=21.8
Q ss_pred CceEEEEEccCCChHHHHHHHHHc
Q 047321 130 GLDVISLVGLGGIGKTTLAQLAYN 153 (807)
Q Consensus 130 ~~~vi~I~G~gGiGKTtLa~~v~~ 153 (807)
...+++|+|++|+|||||++.+..
T Consensus 15 ~G~ii~l~GpsGsGKSTLlk~L~g 38 (219)
T 1s96_A 15 QGTLYIVSAPSGAGKSSLIQALLK 38 (219)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHhc
Confidence 457999999999999999999876
No 375
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=94.06 E-value=0.03 Score=55.90 Aligned_cols=24 Identities=21% Similarity=0.205 Sum_probs=21.6
Q ss_pred CceEEEEEccCCChHHHHHHHHHc
Q 047321 130 GLDVISLVGLGGIGKTTLAQLAYN 153 (807)
Q Consensus 130 ~~~vi~I~G~gGiGKTtLa~~v~~ 153 (807)
...+|+|.|++|+|||||++.+..
T Consensus 24 ~g~iigI~G~~GsGKSTl~k~L~~ 47 (245)
T 2jeo_A 24 RPFLIGVSGGTASGKSTVCEKIME 47 (245)
T ss_dssp CSEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 457999999999999999999865
No 376
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=94.06 E-value=0.035 Score=55.69 Aligned_cols=40 Identities=30% Similarity=0.305 Sum_probs=28.7
Q ss_pred HHHHHHHHhCCCCCCCCCceEEEEEccCCChHHHHHHHHHc
Q 047321 113 KNELLSKLLCGSSEQQKGLDVISLVGLGGIGKTTLAQLAYN 153 (807)
Q Consensus 113 ~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 153 (807)
.++++..+...... .....+|.|+|++|+||||+|+.+..
T Consensus 15 ~~~~~~~~~~~~~~-~~~~~~i~l~G~~GsGKSTla~~L~~ 54 (253)
T 2p5t_B 15 LARNLRSLTRGKKS-SKQPIAILLGGQSGAGKTTIHRIKQK 54 (253)
T ss_dssp HHHHHHHHHTTCCC-CSSCEEEEEESCGGGTTHHHHHHHHH
T ss_pred HHHHHHHHHccCCc-ccCCeEEEEECCCCCCHHHHHHHHHH
Confidence 34454455543321 34567899999999999999999976
No 377
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=94.03 E-value=0.051 Score=56.21 Aligned_cols=25 Identities=28% Similarity=0.336 Sum_probs=22.4
Q ss_pred CCceEEEEEccCCChHHHHHHHHHc
Q 047321 129 KGLDVISLVGLGGIGKTTLAQLAYN 153 (807)
Q Consensus 129 ~~~~vi~I~G~gGiGKTtLa~~v~~ 153 (807)
....+|+|+|++|+|||||++.+..
T Consensus 78 ~~g~iigI~G~~GsGKSTl~~~L~~ 102 (308)
T 1sq5_A 78 RIPYIISIAGSVAVGKSTTARVLQA 102 (308)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 3568999999999999999999876
No 378
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=94.02 E-value=0.032 Score=53.95 Aligned_cols=25 Identities=32% Similarity=0.348 Sum_probs=22.4
Q ss_pred CCceEEEEEccCCChHHHHHHHHHc
Q 047321 129 KGLDVISLVGLGGIGKTTLAQLAYN 153 (807)
Q Consensus 129 ~~~~vi~I~G~gGiGKTtLa~~v~~ 153 (807)
....+|+|+|++|+||||+|+.+..
T Consensus 19 ~~~~~i~i~G~~GsGKSTl~~~L~~ 43 (207)
T 2qt1_A 19 SKTFIIGISGVTNSGKTTLAKNLQK 43 (207)
T ss_dssp CCCEEEEEEESTTSSHHHHHHHHHT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3467999999999999999999986
No 379
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=93.99 E-value=0.023 Score=54.93 Aligned_cols=24 Identities=25% Similarity=0.447 Sum_probs=21.8
Q ss_pred CceEEEEEccCCChHHHHHHHHHc
Q 047321 130 GLDVISLVGLGGIGKTTLAQLAYN 153 (807)
Q Consensus 130 ~~~vi~I~G~gGiGKTtLa~~v~~ 153 (807)
...+|+|+|++|+||||+++.+..
T Consensus 11 ~~~~i~l~G~sGsGKsTl~~~L~~ 34 (204)
T 2qor_A 11 RIPPLVVCGPSGVGKGTLIKKVLS 34 (204)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHH
T ss_pred cCCEEEEECCCCCCHHHHHHHHHH
Confidence 567899999999999999999976
No 380
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=93.99 E-value=0.021 Score=54.03 Aligned_cols=22 Identities=32% Similarity=0.501 Sum_probs=19.7
Q ss_pred eEEEEEccCCChHHHHHHHHHc
Q 047321 132 DVISLVGLGGIGKTTLAQLAYN 153 (807)
Q Consensus 132 ~vi~I~G~gGiGKTtLa~~v~~ 153 (807)
+.|+|+|++|+|||||++.+..
T Consensus 2 RpIVi~GPSG~GK~Tl~~~L~~ 23 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLLKKLFA 23 (186)
T ss_dssp CCEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4588999999999999999875
No 381
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=93.98 E-value=0.036 Score=58.99 Aligned_cols=49 Identities=29% Similarity=0.279 Sum_probs=35.4
Q ss_pred ccccccchHHHHHHHHhCC-------C--CCCCCCceEEEEEccCCChHHHHHHHHHc
Q 047321 105 GVCGRVDEKNELLSKLLCG-------S--SEQQKGLDVISLVGLGGIGKTTLAQLAYN 153 (807)
Q Consensus 105 ~~vGR~~~~~~l~~~L~~~-------~--~~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 153 (807)
.++|.+..++.+...+... . .........|.++|++|+|||++|+.+++
T Consensus 16 ~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~vll~GppGtGKT~la~~ia~ 73 (363)
T 3hws_A 16 YVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLAR 73 (363)
T ss_dssp HCCSCHHHHHHHHHHHHHHHHHHHTTSCSSSCCCCCCCEEEECCTTSSHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHHHhhhccccccccccCCCCeEEEECCCCCCHHHHHHHHHH
Confidence 4789888888888777200 0 00012346789999999999999999987
No 382
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=93.97 E-value=0.02 Score=55.22 Aligned_cols=23 Identities=22% Similarity=0.440 Sum_probs=21.0
Q ss_pred ceEEEEEccCCChHHHHHHHHHc
Q 047321 131 LDVISLVGLGGIGKTTLAQLAYN 153 (807)
Q Consensus 131 ~~vi~I~G~gGiGKTtLa~~v~~ 153 (807)
..+|+|.|+.|+||||+|+.+..
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~ 40 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAE 40 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 45899999999999999999876
No 383
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=93.96 E-value=0.03 Score=53.28 Aligned_cols=24 Identities=33% Similarity=0.329 Sum_probs=21.6
Q ss_pred CceEEEEEccCCChHHHHHHHHHc
Q 047321 130 GLDVISLVGLGGIGKTTLAQLAYN 153 (807)
Q Consensus 130 ~~~vi~I~G~gGiGKTtLa~~v~~ 153 (807)
...+|.|.|+.|+||||+|+.+..
T Consensus 4 ~~~~I~l~G~~GsGKST~~~~L~~ 27 (193)
T 2rhm_A 4 TPALIIVTGHPATGKTTLSQALAT 27 (193)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 457899999999999999999976
No 384
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=93.95 E-value=0.028 Score=56.11 Aligned_cols=24 Identities=29% Similarity=0.264 Sum_probs=21.5
Q ss_pred CceEEEEEccCCChHHHHHHHHHc
Q 047321 130 GLDVISLVGLGGIGKTTLAQLAYN 153 (807)
Q Consensus 130 ~~~vi~I~G~gGiGKTtLa~~v~~ 153 (807)
...+|+|+|++|+||||+++.+..
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La~ 49 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIAQ 49 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 356999999999999999999983
No 385
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=93.94 E-value=0.029 Score=53.47 Aligned_cols=24 Identities=21% Similarity=0.576 Sum_probs=21.7
Q ss_pred CceEEEEEccCCChHHHHHHHHHc
Q 047321 130 GLDVISLVGLGGIGKTTLAQLAYN 153 (807)
Q Consensus 130 ~~~vi~I~G~gGiGKTtLa~~v~~ 153 (807)
..++|+|+|++|+|||||++.+..
T Consensus 18 ~g~~ivl~GPSGaGKsTL~~~L~~ 41 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHIKNALLS 41 (197)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCEEEEECcCCCCHHHHHHHHHh
Confidence 457899999999999999999875
No 386
>2ck3_D ATP synthase subunit beta\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1cow_D* 1bmf_D* 1e1q_D* 1e1r_D* 1efr_D* 1e79_D* 1h8h_D* 1ohh_D* 1qo1_D 1w0j_D* 1w0k_D* 1h8e_D* 2jdi_D* 2jiz_D* 2jj1_D* 2jj2_D* 2v7q_D* 2wss_D* 2w6j_D 2w6e_D ...
Probab=93.92 E-value=0.21 Score=53.86 Aligned_cols=99 Identities=21% Similarity=0.233 Sum_probs=61.0
Q ss_pred HHHHHHhCCCCCCCCCceEEEEEccCCChHHHHHHHHHcCcccccccceEEEEEeCCCC-CHHHHHHHHHHHcCCC----
Q 047321 115 ELLSKLLCGSSEQQKGLDVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSNTF-EEISVAKAIIEGLGVS---- 189 (807)
Q Consensus 115 ~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~~~l~~~---- 189 (807)
+.++.|..- .+-..++|+|..|+|||+|++.+.+.. .+.+-+.++++-+.+.. .+.++.+++.+.-...
T Consensus 142 r~ID~l~pi-----gkGQr~~Ifgg~G~GKT~L~~~i~~~~-~~~~~~v~V~~~iGER~rEv~e~~~~~~~~~~l~~~~~ 215 (482)
T 2ck3_D 142 KVVDLLAPY-----AKGGKIGLFGGAGVGKTVLIMELINNV-AKAHGGYSVFAGVGERTREGNDLYHEMIESGVINLKDA 215 (482)
T ss_dssp HHHHHHSCE-----ETTCEEEEEECTTSSHHHHHHHHHHHT-TTTCSSEEEEEEESCCHHHHHHHHHHHHHHTSSCSSSS
T ss_pred EEEeccccc-----ccCCeeeeecCCCCChHHHHHHHHHhh-HhhCCCEEEEEECCCcchHHHHHHHHhhhccccccccC
Confidence 567777653 355789999999999999999987632 12333556777777664 3455666665542211
Q ss_pred ---------CCCCccHHH-----HHHHHHHHH---hCCceEEEEeCC
Q 047321 190 ---------AFGLSEFES-----LMKQIQEYI---TGKKIFLVLDDV 219 (807)
Q Consensus 190 ---------~~~~~~~~~-----~~~~l~~~l---~~k~~LlVlDdv 219 (807)
..+...... ..-.+.+++ +|+.+||++||+
T Consensus 216 ~~rtvvV~~t~d~p~~~r~~~~~~a~tiAEyfrd~~G~dVLll~Dsi 262 (482)
T 2ck3_D 216 TSKVALVYGQMNEPPGARARVALTGLTVAEYFRDQEGQDVLLFIDNI 262 (482)
T ss_dssp CCCEEEEEECTTSCHHHHHHHHHHHHHHHHHHHHTTCSCEEEEEECT
T ss_pred CceEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHhcCCcEEEEeccH
Confidence 111111111 122345555 368999999998
No 387
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=93.89 E-value=0.064 Score=64.56 Aligned_cols=53 Identities=13% Similarity=0.137 Sum_probs=33.2
Q ss_pred HHHhCCceEEEEeCCCCC-CccC-hH---HHHHhhcCCCCCcEEEEEcCCHHHHHHhCC
Q 047321 205 EYITGKKIFLVLDDVWDG-DYKK-WD---PFFSCLKNGHHESKILITTHDRSVALQLGS 258 (807)
Q Consensus 205 ~~l~~k~~LlVlDdv~~~-~~~~-~~---~l~~~l~~~~~gs~IliTTR~~~v~~~~~~ 258 (807)
..+..++-|++||++... +... .. .+...+.. ..|+.||++|++.+.+.....
T Consensus 863 l~la~~~sLlLLDEp~~Gtd~~dg~~~~~~il~~L~~-~~g~~vl~~TH~~el~~~~~d 920 (1022)
T 2o8b_B 863 LMHATAHSLVLVDELGRGTATFDGTAIANAVVKELAE-TIKCRTLFSTHYHSLVEDYSQ 920 (1022)
T ss_dssp HHHCCTTCEEEEECTTTTSCHHHHHHHHHHHHHHHHH-TSCCEEEEECCCHHHHHHTSS
T ss_pred HHhCCCCcEEEEECCCCCCChHHHHHHHHHHHHHHHh-cCCCEEEEEeCCHHHHHHhCC
Confidence 345678899999999654 2111 11 12223322 237899999999988876543
No 388
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=93.87 E-value=0.19 Score=51.47 Aligned_cols=87 Identities=22% Similarity=0.197 Sum_probs=46.8
Q ss_pred CceEEEEEccCCChHHHHHHHHHcCcccccccceEEEEEeCCCCCHHH--HHHHHHHHcCCCCC---CCccHHHHH-HHH
Q 047321 130 GLDVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSNTFEEIS--VAKAIIEGLGVSAF---GLSEFESLM-KQI 203 (807)
Q Consensus 130 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~--~~~~i~~~l~~~~~---~~~~~~~~~-~~l 203 (807)
...+++|+|.+|+||||++..++.. ....=..+.++.. +.+.... .+..+.+..+.... ...+...+. ..+
T Consensus 97 ~~~~i~i~g~~G~GKTT~~~~la~~--~~~~~~~v~l~~~-d~~~~~~~~ql~~~~~~~~l~~~~~~~~~~p~~l~~~~l 173 (295)
T 1ls1_A 97 DRNLWFLVGLQGSGKTTTAAKLALY--YKGKGRRPLLVAA-DTQRPAAREQLRLLGEKVGVPVLEVMDGESPESIRRRVE 173 (295)
T ss_dssp SSEEEEEECCTTTTHHHHHHHHHHH--HHHTTCCEEEEEC-CSSCHHHHHHHHHHHHHHTCCEEECCTTCCHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH--HHHcCCeEEEecC-CcccHhHHHHHHHhcccCCeEEEEcCCCCCHHHHHHHHH
Confidence 4679999999999999999998763 2221122344443 2222222 12233444433211 112333333 344
Q ss_pred HHHHhCCceEEEEeCC
Q 047321 204 QEYITGKKIFLVLDDV 219 (807)
Q Consensus 204 ~~~l~~k~~LlVlDdv 219 (807)
........-++|+|..
T Consensus 174 ~~~~~~~~D~viiDtp 189 (295)
T 1ls1_A 174 EKARLEARDLILVDTA 189 (295)
T ss_dssp HHHHHHTCCEEEEECC
T ss_pred HHHHhCCCCEEEEeCC
Confidence 4444355668888987
No 389
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=93.81 E-value=0.039 Score=52.27 Aligned_cols=24 Identities=42% Similarity=0.394 Sum_probs=21.9
Q ss_pred CceEEEEEccCCChHHHHHHHHHc
Q 047321 130 GLDVISLVGLGGIGKTTLAQLAYN 153 (807)
Q Consensus 130 ~~~vi~I~G~gGiGKTtLa~~v~~ 153 (807)
...+|.|.|++|+||||+++.+..
T Consensus 12 ~~~~i~l~G~~GsGKsT~~~~L~~ 35 (186)
T 2yvu_A 12 KGIVVWLTGLPGSGKTTIATRLAD 35 (186)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHH
Confidence 467899999999999999999986
No 390
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=93.81 E-value=0.2 Score=51.81 Aligned_cols=25 Identities=40% Similarity=0.547 Sum_probs=22.2
Q ss_pred CCceEEEEEccCCChHHHHHHHHHc
Q 047321 129 KGLDVISLVGLGGIGKTTLAQLAYN 153 (807)
Q Consensus 129 ~~~~vi~I~G~gGiGKTtLa~~v~~ 153 (807)
....+|+|+|++|+||||++..++.
T Consensus 103 ~~~~vI~ivG~~G~GKTT~~~~LA~ 127 (320)
T 1zu4_A 103 NRLNIFMLVGVNGTGKTTSLAKMAN 127 (320)
T ss_dssp TSCEEEEEESSTTSSHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 4568999999999999999988876
No 391
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=93.79 E-value=0.03 Score=53.23 Aligned_cols=22 Identities=23% Similarity=0.419 Sum_probs=20.3
Q ss_pred eEEEEEccCCChHHHHHHHHHc
Q 047321 132 DVISLVGLGGIGKTTLAQLAYN 153 (807)
Q Consensus 132 ~vi~I~G~gGiGKTtLa~~v~~ 153 (807)
.+|.|.|+.|+||||+|+.+..
T Consensus 2 ~~I~i~G~~GsGKsT~~~~L~~ 23 (194)
T 1nks_A 2 KIGIVTGIPGVGKSTVLAKVKE 23 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4789999999999999999986
No 392
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=93.78 E-value=0.17 Score=59.55 Aligned_cols=66 Identities=15% Similarity=0.243 Sum_probs=42.8
Q ss_pred HHHHHHHHHHHhCC---ceEEEEeCCCCC-CccChHHHHHhhcCC-CCCcEEEEEcCCHHHHHHhCCCceEeC
Q 047321 197 ESLMKQIQEYITGK---KIFLVLDDVWDG-DYKKWDPFFSCLKNG-HHESKILITTHDRSVALQLGSIDIIPV 264 (807)
Q Consensus 197 ~~~~~~l~~~l~~k---~~LlVlDdv~~~-~~~~~~~l~~~l~~~-~~gs~IliTTR~~~v~~~~~~~~~~~l 264 (807)
+...-.+...+..+ +-++|||+.... |......+...+... ..|..||++|++.+++. . ...++.+
T Consensus 850 ekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~TVIvisHdl~~i~-~-aDrIivL 920 (972)
T 2r6f_A 850 EAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNGDTVLVIEHNLDVIK-T-ADYIIDL 920 (972)
T ss_dssp HHHHHHHHHHHSSCCCSCEEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHT-T-CSEEEEE
T ss_pred HHHHHHHHHHHhcCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHH-h-CCEEEEE
Confidence 33444566777654 589999999765 444455555555432 24678999999988764 2 4456666
No 393
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=93.77 E-value=0.034 Score=53.71 Aligned_cols=22 Identities=41% Similarity=0.501 Sum_probs=20.3
Q ss_pred eEEEEEccCCChHHHHHHHHHc
Q 047321 132 DVISLVGLGGIGKTTLAQLAYN 153 (807)
Q Consensus 132 ~vi~I~G~gGiGKTtLa~~v~~ 153 (807)
.+|+|+|+.|+||||+++.+..
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999975
No 394
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=93.76 E-value=0.031 Score=56.07 Aligned_cols=22 Identities=23% Similarity=0.098 Sum_probs=20.2
Q ss_pred eEEEEEccCCChHHHHHHHHHc
Q 047321 132 DVISLVGLGGIGKTTLAQLAYN 153 (807)
Q Consensus 132 ~vi~I~G~gGiGKTtLa~~v~~ 153 (807)
.+|.|+|++|+||||||+.++.
T Consensus 2 ~li~I~G~~GSGKSTla~~La~ 23 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQ 23 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHh
Confidence 4789999999999999999976
No 395
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=93.75 E-value=0.029 Score=54.03 Aligned_cols=22 Identities=41% Similarity=0.483 Sum_probs=20.1
Q ss_pred eEEEEEccCCChHHHHHHHHHc
Q 047321 132 DVISLVGLGGIGKTTLAQLAYN 153 (807)
Q Consensus 132 ~vi~I~G~gGiGKTtLa~~v~~ 153 (807)
.+|+|+|+.|+||||+++.+..
T Consensus 2 ~~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 2 KRIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHH
Confidence 3699999999999999999986
No 396
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=93.68 E-value=0.53 Score=55.66 Aligned_cols=69 Identities=14% Similarity=0.238 Sum_probs=44.7
Q ss_pred ccHHHHHHHHHHHHhCC---ceEEEEeCCCCC-CccChHHHHHhhcCC-CCCcEEEEEcCCHHHHHHhCCCceEeC
Q 047321 194 SEFESLMKQIQEYITGK---KIFLVLDDVWDG-DYKKWDPFFSCLKNG-HHESKILITTHDRSVALQLGSIDIIPV 264 (807)
Q Consensus 194 ~~~~~~~~~l~~~l~~k---~~LlVlDdv~~~-~~~~~~~l~~~l~~~-~~gs~IliTTR~~~v~~~~~~~~~~~l 264 (807)
...+...-.|.+.|..+ +-++|||+.... |...-..+...+... ..|..||++|++.++... ...++.+
T Consensus 807 SGGErQRV~LAraL~~~p~~p~LLILDEPTsGLD~~~~~~L~~lL~~L~~~G~TVIvI~HdL~~i~~--ADrIivL 880 (916)
T 3pih_A 807 SGGEAQRIKLASELRKRDTGRTLYILDEPTVGLHFEDVRKLVEVLHRLVDRGNTVIVIEHNLDVIKN--ADHIIDL 880 (916)
T ss_dssp CHHHHHHHHHHHHHTSCCCSSEEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHTT--CSEEEEE
T ss_pred CHHHHHHHHHHHHHhhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHh--CCEEEEe
Confidence 34444455677777544 579999999765 444445555554432 246679999999988753 4556665
No 397
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=93.64 E-value=0.036 Score=57.08 Aligned_cols=24 Identities=33% Similarity=0.387 Sum_probs=21.7
Q ss_pred CceEEEEEccCCChHHHHHHHHHc
Q 047321 130 GLDVISLVGLGGIGKTTLAQLAYN 153 (807)
Q Consensus 130 ~~~vi~I~G~gGiGKTtLa~~v~~ 153 (807)
...+++|+|++|+||||+++.++.
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lag 124 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGR 124 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHH
Confidence 467999999999999999999875
No 398
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=93.61 E-value=0.029 Score=52.89 Aligned_cols=24 Identities=42% Similarity=0.439 Sum_probs=21.2
Q ss_pred CceEEEEEccCCChHHHHHHHHHc
Q 047321 130 GLDVISLVGLGGIGKTTLAQLAYN 153 (807)
Q Consensus 130 ~~~vi~I~G~gGiGKTtLa~~v~~ 153 (807)
..++|.|+|++|+||||+|+.+..
T Consensus 10 ~~~~i~i~G~~GsGKst~~~~l~~ 33 (180)
T 3iij_A 10 LLPNILLTGTPGVGKTTLGKELAS 33 (180)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHHH
T ss_pred cCCeEEEEeCCCCCHHHHHHHHHH
Confidence 346789999999999999999985
No 399
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=93.60 E-value=0.034 Score=54.57 Aligned_cols=22 Identities=36% Similarity=0.495 Sum_probs=20.4
Q ss_pred eEEEEEccCCChHHHHHHHHHc
Q 047321 132 DVISLVGLGGIGKTTLAQLAYN 153 (807)
Q Consensus 132 ~vi~I~G~gGiGKTtLa~~v~~ 153 (807)
.+|+|+|++|+||||+|+.+..
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~ 27 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAE 27 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5899999999999999999975
No 400
>1fx0_B ATP synthase beta chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_B*
Probab=93.59 E-value=0.14 Score=55.41 Aligned_cols=99 Identities=18% Similarity=0.185 Sum_probs=62.3
Q ss_pred HHHHHHhCCCCCCCCCceEEEEEccCCChHHHHHHHHHcCcccccccceEEEEEeCCCCC-HHHHHHHHHHHcCCC----
Q 047321 115 ELLSKLLCGSSEQQKGLDVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSNTFE-EISVAKAIIEGLGVS---- 189 (807)
Q Consensus 115 ~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~-~~~~~~~i~~~l~~~---- 189 (807)
+.++.|..- .+-..++|+|.+|+|||+|+..+.++. .+.+-+.++++-+.+... +.++.+++.+.=...
T Consensus 154 rvID~l~pi-----gkGqr~gIfgg~GvGKT~L~~~l~~~~-a~~~~~v~V~~~iGER~rEv~e~~~~~~~~~~l~~~~l 227 (498)
T 1fx0_B 154 KVVNLLAPY-----RRGGKIGLFGGAGVGKTVLIMELINNI-AKAHGGVSVFGGVGERTREGNDLYMEMKESGVINEQNI 227 (498)
T ss_dssp TTHHHHSCC-----CTTCCEEEEECSSSSHHHHHHHHHHHT-TTTCSSCEEEEEESCCSHHHHHHHHHHHHTTSSCSSTT
T ss_pred eEeeeeccc-----ccCCeEEeecCCCCCchHHHHHHHHHH-HhhCCCEEEEEEcccCcHHHHHHHHhhhcccccccccc
Confidence 367777653 355679999999999999999887731 123446777887777654 456666665532111
Q ss_pred ----------CCCCcc-----HHHHHHHHHHHHh---CCceEEEEeCC
Q 047321 190 ----------AFGLSE-----FESLMKQIQEYIT---GKKIFLVLDDV 219 (807)
Q Consensus 190 ----------~~~~~~-----~~~~~~~l~~~l~---~k~~LlVlDdv 219 (807)
..+... .....-.+.++++ |+.+|+++||+
T Consensus 228 ~~~rtvvV~~t~d~p~~~R~~~~~~altiAEyfrd~~G~dVLl~~Dsi 275 (498)
T 1fx0_B 228 AESKVALVYGQMNEPPGARMRVGLTALTMAEYFRDVNEQDVLLFIDNI 275 (498)
T ss_dssp CCCCEEEEEECTTSCHHHHTTHHHHHHHTHHHHTTTSCCEEEEEEECS
T ss_pred cccceEEEEeCCCCCHHHHHHHHHHHHHHHHHHHHhcCCcEEEEeccH
Confidence 111111 1122333566774 57999999998
No 401
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=93.58 E-value=0.033 Score=52.91 Aligned_cols=22 Identities=41% Similarity=0.699 Sum_probs=20.4
Q ss_pred eEEEEEccCCChHHHHHHHHHc
Q 047321 132 DVISLVGLGGIGKTTLAQLAYN 153 (807)
Q Consensus 132 ~vi~I~G~gGiGKTtLa~~v~~ 153 (807)
.+|.|.|+.|+||||+|+.+..
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~ 25 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMD 25 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5899999999999999999986
No 402
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=93.58 E-value=0.039 Score=53.01 Aligned_cols=25 Identities=36% Similarity=0.396 Sum_probs=22.8
Q ss_pred CCceEEEEEccCCChHHHHHHHHHc
Q 047321 129 KGLDVISLVGLGGIGKTTLAQLAYN 153 (807)
Q Consensus 129 ~~~~vi~I~G~gGiGKTtLa~~v~~ 153 (807)
.+..+|+|+|+.|+||||+|+.+..
T Consensus 6 ~~~~~I~i~G~~GsGKST~~~~La~ 30 (203)
T 1uf9_A 6 KHPIIIGITGNIGSGKSTVAALLRS 30 (203)
T ss_dssp CCCEEEEEEECTTSCHHHHHHHHHH
T ss_pred cCceEEEEECCCCCCHHHHHHHHHH
Confidence 4578999999999999999999987
No 403
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=93.52 E-value=0.03 Score=53.20 Aligned_cols=22 Identities=41% Similarity=0.499 Sum_probs=19.7
Q ss_pred eEEEEEccCCChHHHHHHHHHc
Q 047321 132 DVISLVGLGGIGKTTLAQLAYN 153 (807)
Q Consensus 132 ~vi~I~G~gGiGKTtLa~~v~~ 153 (807)
.+++|+|++|+|||||++.++.
T Consensus 2 ~~i~i~G~nG~GKTTll~~l~g 23 (189)
T 2i3b_A 2 RHVFLTGPPGVGKTTLIHKASE 23 (189)
T ss_dssp CCEEEESCCSSCHHHHHHHHHH
T ss_pred CEEEEECCCCChHHHHHHHHHh
Confidence 3689999999999999999875
No 404
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=93.50 E-value=0.87 Score=60.09 Aligned_cols=227 Identities=12% Similarity=0.034 Sum_probs=0.0
Q ss_pred EEEEccCCChHHHHHHHHHcCcccccccceEEEEEeCCCCCHHHHHHHHHHHcCCC------------CCCCccHHHHHH
Q 047321 134 ISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSNTFEEISVAKAIIEGLGVS------------AFGLSEFESLMK 201 (807)
Q Consensus 134 i~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~------------~~~~~~~~~~~~ 201 (807)
|.++|++|+|||++|+.+.....- -..+.++++...+...+.+.+-..+... .
T Consensus 1270 vLL~GPpGtGKT~la~~~l~~~~~----~~~~~infsa~ts~~~~~~~i~~~~~~~~~~~g~~~~P~~~----------- 1334 (2695)
T 4akg_A 1270 IILCGPPGSGKTMIMNNALRNSSL----YDVVGINFSKDTTTEHILSALHRHTNYVTTSKGLTLLPKSD----------- 1334 (2695)
T ss_dssp EEEECSTTSSHHHHHHHHHHSCSS----CEEEEEECCTTCCHHHHHHHHHHHBCCEEETTTEEEEEBSS-----------
T ss_pred EEEECCCCCCHHHHHHHHHhcCCC----CceEEEEeecCCCHHHHHHHHHHHhhhccccCCccccCCCC-----------
Q ss_pred HHHHHHhCCceEEEEeCCCCCCcc------ChHHHHHhhcCCC------------CCcEEEEEcCCHH-------HHHHh
Q 047321 202 QIQEYITGKKIFLVLDDVWDGDYK------KWDPFFSCLKNGH------------HESKILITTHDRS-------VALQL 256 (807)
Q Consensus 202 ~l~~~l~~k~~LlVlDdv~~~~~~------~~~~l~~~l~~~~------------~gs~IliTTR~~~-------v~~~~ 256 (807)
+++.++.+||+.-...+ ..+.++..+..++ .+..+|.++-... -....
T Consensus 1335 -------gk~~VlFiDEinmp~~d~yg~q~~lelLRq~le~gg~yd~~~~~~~~~~~i~lIaA~Npp~~gGR~~l~~rll 1407 (2695)
T 4akg_A 1335 -------IKNLVLFCDEINLPKLDKYGSQNVVLFLRQLMEKQGFWKTPENKWVTIERIHIVGACNPPTDPGRIPMSERFT 1407 (2695)
T ss_dssp -------SSCEEEEEETTTCSCCCSSSCCHHHHHHHHHHHTSSEECTTTCCEEEEESEEEEEEECCTTSTTCCCCCHHHH
T ss_pred -------CceEEEEecccccccccccCchhHHHHHHHHHhcCCEEEcCCCcEEEecCEEEEEecCCCccCCCccCChhhh
Q ss_pred CCCceEeCCCCChhhHHHHHHHHHhccCCccCccchHHHHHHHHHHcCCCHHHHHHHHHHhhcCCCHHHHHHHHhccccc
Q 047321 257 GSIDIIPVKELGEGECWLLFKQIAFLRRSFEDCEKLEPIGRKIASKCKGLPLAAKVIGNLLRSKNTAKEWHIILDSEMWK 336 (807)
Q Consensus 257 ~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~~~~I~~~c~glPLai~~~~~~l~~~~~~~~w~~~~~~~~~~ 336 (807)
.....+.++..+.++-..+|.......-. ..+....++..|++. +.+-|..+...
T Consensus 1408 Rrf~vi~i~~P~~~~l~~I~~~il~~~l~--~~~~v~~~~~~lv~a-------------------ti~~y~~v~~~---- 1462 (2695)
T 4akg_A 1408 RHAAILYLGYPSGKSLSQIYEIYYKAIFK--LVPEFRSYTEPFARA-------------------SVHLYNECKAR---- 1462 (2695)
T ss_dssp TTEEEEECCCCTTTHHHHHHHHHHHHHTT--SSGGGGGGHHHHHHH-------------------HHHHHHHHHHH----
T ss_pred heeeEEEeCCCCHHHHHHHHHHHHHHHhc--cCHHHHHHHHHHHHH-------------------HHHHHHHHHHH----
Q ss_pred cccCCCCchhhHHhcccCCCCccchhhhhhhhccC-CCcceechhHHHHHHHhcC---CCCCCCCchHHHHHHHHHHHHh
Q 047321 337 VQEIGQGILAPLLLSYNDLPSNSMVKRCFSYCAVF-PKDYNMNKRELINLWMTQG---YLNADEDEEMEMIGEEYFNILA 412 (807)
Q Consensus 337 ~~~~~~~i~~~l~lsy~~L~~~~~~k~cfl~~s~f-p~~~~i~~~~li~~W~aeg---~i~~~~~~~~e~~~~~~~~~L~ 412 (807)
..+.-+.-|--=+. ++-+.|.-+... |+...-..+.++++|+-|. |-++--.....+...+.+.+.+
T Consensus 1463 -------~~~~~k~HY~FnlR--DLsrv~qGll~~~~~~~~~~~~~l~rLw~HE~~Rvf~DRLv~~~D~~~f~~~l~~~~ 1533 (2695)
T 4akg_A 1463 -------YSTGLQSHYLFSPR--ELTRLVRGVYTAINTGPRQTLRSLIRLWAYEAWRIFADRLVGVKEKNSFEQLLYETV 1533 (2695)
T ss_dssp -------SCTTTCTTCCCCHH--HHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHTTTCCSSHHHHHHHHHHHHHH
T ss_pred -------cCCccCCCcccCHH--HHHHHHHHHHhcCchhhhccHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Q ss_pred hcCC
Q 047321 413 TRSF 416 (807)
Q Consensus 413 ~rsl 416 (807)
...|
T Consensus 1534 ~~~f 1537 (2695)
T 4akg_A 1534 DKYL 1537 (2695)
T ss_dssp HHHS
T ss_pred HHHh
No 405
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=93.50 E-value=0.038 Score=52.30 Aligned_cols=24 Identities=29% Similarity=0.322 Sum_probs=21.6
Q ss_pred CceEEEEEccCCChHHHHHHHHHc
Q 047321 130 GLDVISLVGLGGIGKTTLAQLAYN 153 (807)
Q Consensus 130 ~~~vi~I~G~gGiGKTtLa~~v~~ 153 (807)
....|+|+|+.|+||||+|+.+..
T Consensus 9 ~~~~I~l~G~~GsGKSTv~~~La~ 32 (184)
T 1y63_A 9 KGINILITGTPGTGKTSMAEMIAA 32 (184)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHH
Confidence 456899999999999999999986
No 406
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=93.49 E-value=0.22 Score=51.75 Aligned_cols=53 Identities=13% Similarity=0.047 Sum_probs=36.2
Q ss_pred CceEEEEEccCCChHHHHHHHHHcCcccccccceEEEEEeCCCCCHHHHHHHHHHHc
Q 047321 130 GLDVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSNTFEEISVAKAIIEGL 186 (807)
Q Consensus 130 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l 186 (807)
.-.++.|.|.+|+||||||..++.+... .=..++|++. ..+..++...++...
T Consensus 45 ~G~LiiIaG~pG~GKTt~al~ia~~~a~--~g~~Vl~fSl--Ems~~ql~~Rlls~~ 97 (338)
T 4a1f_A 45 KGSLVIIGARPSMGKTSLMMNMVLSALN--DDRGVAVFSL--EMSAEQLALRALSDL 97 (338)
T ss_dssp TTCEEEEEECTTSCHHHHHHHHHHHHHH--TTCEEEEEES--SSCHHHHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHH--cCCeEEEEeC--CCCHHHHHHHHHHHh
Confidence 4579999999999999999888764222 1124556554 455677776665543
No 407
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=93.47 E-value=0.29 Score=52.60 Aligned_cols=24 Identities=42% Similarity=0.367 Sum_probs=21.5
Q ss_pred CceEEEEEccCCChHHHHHHHHHc
Q 047321 130 GLDVISLVGLGGIGKTTLAQLAYN 153 (807)
Q Consensus 130 ~~~vi~I~G~gGiGKTtLa~~v~~ 153 (807)
...++.|+|++|+||||++..++.
T Consensus 97 ~~~vi~i~G~~GsGKTT~~~~LA~ 120 (425)
T 2ffh_A 97 DRNLWFLVGLQGSGKTTTAAKLAL 120 (425)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 467999999999999999988875
No 408
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=93.45 E-value=0.035 Score=53.33 Aligned_cols=21 Identities=29% Similarity=0.428 Sum_probs=19.7
Q ss_pred EEEEEccCCChHHHHHHHHHc
Q 047321 133 VISLVGLGGIGKTTLAQLAYN 153 (807)
Q Consensus 133 vi~I~G~gGiGKTtLa~~v~~ 153 (807)
+|+|.|+.|+||||+|+.+..
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~ 22 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISK 22 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHH
Confidence 689999999999999999986
No 409
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=93.43 E-value=0.03 Score=52.51 Aligned_cols=21 Identities=38% Similarity=0.536 Sum_probs=19.6
Q ss_pred EEEEEccCCChHHHHHHHHHc
Q 047321 133 VISLVGLGGIGKTTLAQLAYN 153 (807)
Q Consensus 133 vi~I~G~gGiGKTtLa~~v~~ 153 (807)
.|.|.|++|+||||+|+.+..
T Consensus 6 ~i~i~G~~GsGKsTla~~La~ 26 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAK 26 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 689999999999999999986
No 410
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=93.37 E-value=0.046 Score=52.58 Aligned_cols=25 Identities=28% Similarity=0.329 Sum_probs=22.2
Q ss_pred CCceEEEEEccCCChHHHHHHHHHc
Q 047321 129 KGLDVISLVGLGGIGKTTLAQLAYN 153 (807)
Q Consensus 129 ~~~~vi~I~G~gGiGKTtLa~~v~~ 153 (807)
....+|+|.|+.|+||||+|+.+..
T Consensus 13 ~~~~~I~l~G~~GsGKsT~~~~L~~ 37 (203)
T 1ukz_A 13 DQVSVIFVLGGPGAGKGTQCEKLVK 37 (203)
T ss_dssp TTCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHH
Confidence 3567899999999999999999985
No 411
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=93.36 E-value=0.042 Score=55.03 Aligned_cols=24 Identities=33% Similarity=0.354 Sum_probs=21.6
Q ss_pred CceEEEEEccCCChHHHHHHHHHc
Q 047321 130 GLDVISLVGLGGIGKTTLAQLAYN 153 (807)
Q Consensus 130 ~~~vi~I~G~gGiGKTtLa~~v~~ 153 (807)
...+|+|+|++|+||||+++.+..
T Consensus 26 ~g~~I~I~G~~GsGKSTl~k~La~ 49 (252)
T 4e22_A 26 IAPVITVDGPSGAGKGTLCKALAE 49 (252)
T ss_dssp TSCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 346999999999999999999985
No 412
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=93.35 E-value=0.14 Score=59.85 Aligned_cols=24 Identities=17% Similarity=0.099 Sum_probs=21.0
Q ss_pred CceEEEEEccCCChHHHHHHHHHc
Q 047321 130 GLDVISLVGLGGIGKTTLAQLAYN 153 (807)
Q Consensus 130 ~~~vi~I~G~gGiGKTtLa~~v~~ 153 (807)
..++++|+|++|+||||+.+.+..
T Consensus 606 ~g~i~~ItGpNGsGKSTlLr~iag 629 (800)
T 1wb9_A 606 QRRMLIITGPNMGGKSTYMRQTAL 629 (800)
T ss_dssp SSCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCChHHHHHHHHH
Confidence 457999999999999999998753
No 413
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=93.35 E-value=0.029 Score=54.23 Aligned_cols=45 Identities=20% Similarity=0.088 Sum_probs=27.6
Q ss_pred HHhCCceEEEEeCCCCCCccChHHHHHhhcCCCCCcEEEEEcCCHHHHH
Q 047321 206 YITGKKIFLVLDDVWDGDYKKWDPFFSCLKNGHHESKILITTHDRSVAL 254 (807)
Q Consensus 206 ~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~IliTTR~~~v~~ 254 (807)
.+..++-+|+||++.+. ....+...+.....|..|| +|++...+.
T Consensus 118 aL~~~p~lllLDEPts~---~~~~l~~~l~~l~~g~tii-vtHd~~~~~ 162 (208)
T 3b85_A 118 GRTLNDAFVILDEAQNT---TPAQMKMFLTRLGFGSKMV-VTGDITQVD 162 (208)
T ss_dssp TCCBCSEEEEECSGGGC---CHHHHHHHHTTBCTTCEEE-EEEC-----
T ss_pred HHhcCCCEEEEeCCccc---cHHHHHHHHHHhcCCCEEE-EECCHHHHh
Confidence 34457789999999765 4445555555444577788 999876543
No 414
>3fwy_A Light-independent protochlorophyllide reductase I ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2}
Probab=93.34 E-value=0.044 Score=56.70 Aligned_cols=25 Identities=36% Similarity=0.551 Sum_probs=21.3
Q ss_pred CCceEEEEEccCCChHHHHHHHHHc
Q 047321 129 KGLDVISLVGLGGIGKTTLAQLAYN 153 (807)
Q Consensus 129 ~~~~vi~I~G~gGiGKTtLa~~v~~ 153 (807)
.+.+||+|.|-||+||||.+..+.-
T Consensus 46 ~~aKVIAIaGKGGVGKTTtavNLA~ 70 (314)
T 3fwy_A 46 TGAKVFAVYGKGGIGKSTTSSNLSA 70 (314)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCceEEEEECCCccCHHHHHHHHHH
Confidence 4689999999999999999977654
No 415
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=93.31 E-value=0.042 Score=52.45 Aligned_cols=24 Identities=29% Similarity=0.324 Sum_probs=21.5
Q ss_pred CceEEEEEccCCChHHHHHHHHHc
Q 047321 130 GLDVISLVGLGGIGKTTLAQLAYN 153 (807)
Q Consensus 130 ~~~vi~I~G~gGiGKTtLa~~v~~ 153 (807)
...+|+|.|+.|+||||+|+.+..
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~La~ 31 (196)
T 2c95_A 8 KTNIIFVVGGPGSGKGTQCEKIVQ 31 (196)
T ss_dssp TSCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHH
Confidence 346899999999999999999976
No 416
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=93.31 E-value=0.029 Score=59.26 Aligned_cols=44 Identities=25% Similarity=0.311 Sum_probs=32.5
Q ss_pred CccccccchHHHHHHHHhCCCCCCCCCceEEEEEccCCChHHHHHHHHHc
Q 047321 104 GGVCGRVDEKNELLSKLLCGSSEQQKGLDVISLVGLGGIGKTTLAQLAYN 153 (807)
Q Consensus 104 ~~~vGR~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 153 (807)
.+++|.+..++.+...+... ...-+.|+|+.|+|||++|+.+++
T Consensus 24 ~~i~G~~~~~~~l~~~~~~~------~~~~vLl~G~~GtGKT~la~~la~ 67 (350)
T 1g8p_A 24 SAIVGQEDMKLALLLTAVDP------GIGGVLVFGDRGTGKSTAVRALAA 67 (350)
T ss_dssp GGSCSCHHHHHHHHHHHHCG------GGCCEEEECCGGGCTTHHHHHHHH
T ss_pred hhccChHHHHHHHHHHhhCC------CCceEEEECCCCccHHHHHHHHHH
Confidence 45899988666655444422 122389999999999999999986
No 417
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=93.31 E-value=0.043 Score=52.28 Aligned_cols=23 Identities=26% Similarity=0.206 Sum_probs=20.7
Q ss_pred ceEEEEEccCCChHHHHHHHHHc
Q 047321 131 LDVISLVGLGGIGKTTLAQLAYN 153 (807)
Q Consensus 131 ~~vi~I~G~gGiGKTtLa~~v~~ 153 (807)
..+|+|.|+.|+||||+|+.+..
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~ 25 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVE 25 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 36899999999999999999875
No 418
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=93.27 E-value=0.046 Score=56.23 Aligned_cols=24 Identities=38% Similarity=0.357 Sum_probs=21.6
Q ss_pred CceEEEEEccCCChHHHHHHHHHc
Q 047321 130 GLDVISLVGLGGIGKTTLAQLAYN 153 (807)
Q Consensus 130 ~~~vi~I~G~gGiGKTtLa~~v~~ 153 (807)
...+++|+|++|+||||+++.++.
T Consensus 99 ~g~vi~lvG~nGsGKTTll~~Lag 122 (302)
T 3b9q_A 99 KPAVIMIVGVNGGGKTTSLGKLAH 122 (302)
T ss_dssp SCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHH
Confidence 467999999999999999999865
No 419
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=93.25 E-value=0.04 Score=51.16 Aligned_cols=24 Identities=33% Similarity=0.418 Sum_probs=20.8
Q ss_pred CceEEEEEccCCChHHHHHHHHHc
Q 047321 130 GLDVISLVGLGGIGKTTLAQLAYN 153 (807)
Q Consensus 130 ~~~vi~I~G~gGiGKTtLa~~v~~ 153 (807)
...+|+|.|+.|+||||+|+.+..
T Consensus 6 ~~~~i~l~G~~GsGKSTva~~La~ 29 (168)
T 1zuh_A 6 HMQHLVLIGFMGSGKSSLAQELGL 29 (168)
T ss_dssp --CEEEEESCTTSSHHHHHHHHHH
T ss_pred ccceEEEECCCCCCHHHHHHHHHH
Confidence 567999999999999999999976
No 420
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=93.24 E-value=0.029 Score=55.42 Aligned_cols=23 Identities=30% Similarity=0.317 Sum_probs=16.6
Q ss_pred ceEEEEEccCCChHHHHHHHHH-c
Q 047321 131 LDVISLVGLGGIGKTTLAQLAY-N 153 (807)
Q Consensus 131 ~~vi~I~G~gGiGKTtLa~~v~-~ 153 (807)
..+++|+|++|+|||||++.+. .
T Consensus 27 G~ii~l~Gp~GsGKSTl~~~L~~~ 50 (231)
T 3lnc_A 27 GVILVLSSPSGCGKTTVANKLLEK 50 (231)
T ss_dssp CCEEEEECSCC----CHHHHHHC-
T ss_pred CCEEEEECCCCCCHHHHHHHHHhc
Confidence 4689999999999999999998 5
No 421
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=93.23 E-value=0.045 Score=54.80 Aligned_cols=25 Identities=16% Similarity=0.131 Sum_probs=21.9
Q ss_pred CCceEEEEEccCCChHHHHHHHHHc
Q 047321 129 KGLDVISLVGLGGIGKTTLAQLAYN 153 (807)
Q Consensus 129 ~~~~vi~I~G~gGiGKTtLa~~v~~ 153 (807)
....+|+|.|+.|+||||+|+.+..
T Consensus 20 ~~~~iI~I~G~~GSGKST~a~~L~~ 44 (252)
T 1uj2_A 20 GEPFLIGVSGGTASGKSSVCAKIVQ 44 (252)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHH
Confidence 3567999999999999999999876
No 422
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=93.22 E-value=0.046 Score=50.65 Aligned_cols=24 Identities=33% Similarity=0.383 Sum_probs=21.3
Q ss_pred CceEEEEEccCCChHHHHHHHHHc
Q 047321 130 GLDVISLVGLGGIGKTTLAQLAYN 153 (807)
Q Consensus 130 ~~~vi~I~G~gGiGKTtLa~~v~~ 153 (807)
..++++|+|..|+|||||+..+..
T Consensus 3 ~~~~i~i~G~sGsGKTTl~~~L~~ 26 (169)
T 1xjc_A 3 AMNVWQVVGYKHSGKTTLMEKWVA 26 (169)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 457999999999999999999886
No 423
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=93.22 E-value=0.046 Score=51.67 Aligned_cols=23 Identities=26% Similarity=0.255 Sum_probs=20.8
Q ss_pred ceEEEEEccCCChHHHHHHHHHc
Q 047321 131 LDVISLVGLGGIGKTTLAQLAYN 153 (807)
Q Consensus 131 ~~vi~I~G~gGiGKTtLa~~v~~ 153 (807)
..+|+|.|+.|+||||+|+.+..
T Consensus 4 g~~I~l~G~~GsGKST~~~~La~ 26 (186)
T 3cm0_A 4 GQAVIFLGPPGAGKGTQASRLAQ 26 (186)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999999975
No 424
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=93.14 E-value=0.25 Score=54.89 Aligned_cols=51 Identities=18% Similarity=0.078 Sum_probs=32.9
Q ss_pred CceEEEEEccCCChHHHHHHHHHcCcccccccceEEEEEeCCCCCHHHHHHHHH
Q 047321 130 GLDVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSNTFEEISVAKAII 183 (807)
Q Consensus 130 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 183 (807)
.-.++.|.|.+|+||||||..++.+.... +=..++|++... +..++...++
T Consensus 241 ~G~l~li~G~pG~GKT~lal~~a~~~a~~-~g~~vl~~s~E~--s~~~l~~r~~ 291 (503)
T 1q57_A 241 GGEVIMVTSGSGMVMSTFVRQQALQWGTA-MGKKVGLAMLEE--SVEETAEDLI 291 (503)
T ss_dssp TTCEEEEEESSCHHHHHHHHHHHHHHTTT-SCCCEEEEESSS--CHHHHHHHHH
T ss_pred CCeEEEEeecCCCCchHHHHHHHHHHHHh-cCCcEEEEeccC--CHHHHHHHHH
Confidence 45689999999999999998887632211 112466776543 3445554443
No 425
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=93.13 E-value=0.059 Score=52.73 Aligned_cols=25 Identities=32% Similarity=0.458 Sum_probs=22.2
Q ss_pred CceEEEEEccCCChHHHHHHHHHcC
Q 047321 130 GLDVISLVGLGGIGKTTLAQLAYNN 154 (807)
Q Consensus 130 ~~~vi~I~G~gGiGKTtLa~~v~~~ 154 (807)
....|+|+|.+|+|||||+..+...
T Consensus 37 ~~~~i~ivG~~gvGKTtl~~~l~~~ 61 (226)
T 2hf9_A 37 GVVAFDFMGAIGSGKTLLIEKLIDN 61 (226)
T ss_dssp TCEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHH
Confidence 5688999999999999999998763
No 426
>3l0o_A Transcription termination factor RHO; helicase, RHO factor, RNA capture mechanism, ATP-binding, hydrolase, nucleotide-binding, RN binding; 2.35A {Thermotoga maritima}
Probab=93.10 E-value=0.036 Score=57.95 Aligned_cols=37 Identities=19% Similarity=0.002 Sum_probs=29.5
Q ss_pred hHHHHHHHHhCCCCCCCCCceEEEEEccCCChHHHHHHHHHc
Q 047321 112 EKNELLSKLLCGSSEQQKGLDVISLVGLGGIGKTTLAQLAYN 153 (807)
Q Consensus 112 ~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 153 (807)
---++++.+..- ..-..++|+|..|+|||+|++.+.+
T Consensus 161 tGiraID~l~Pi-----grGQR~lIfg~~g~GKT~Ll~~Ia~ 197 (427)
T 3l0o_A 161 YSTRLIDLFAPI-----GKGQRGMIVAPPKAGKTTILKEIAN 197 (427)
T ss_dssp HHHHHHHHHSCC-----BTTCEEEEEECTTCCHHHHHHHHHH
T ss_pred ccchhhhhcccc-----cCCceEEEecCCCCChhHHHHHHHH
Confidence 345678888753 2456889999999999999998887
No 427
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=93.09 E-value=0.052 Score=51.05 Aligned_cols=24 Identities=33% Similarity=0.342 Sum_probs=21.6
Q ss_pred CceEEEEEccCCChHHHHHHHHHc
Q 047321 130 GLDVISLVGLGGIGKTTLAQLAYN 153 (807)
Q Consensus 130 ~~~vi~I~G~gGiGKTtLa~~v~~ 153 (807)
...+|+|.|+.|+||||+++.+..
T Consensus 4 ~g~~i~l~G~~GsGKST~~~~L~~ 27 (179)
T 2pez_A 4 RGCTVWLTGLSGAGKTTVSMALEE 27 (179)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 457899999999999999999976
No 428
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=93.09 E-value=0.033 Score=51.92 Aligned_cols=22 Identities=36% Similarity=0.430 Sum_probs=20.3
Q ss_pred eEEEEEccCCChHHHHHHHHHc
Q 047321 132 DVISLVGLGGIGKTTLAQLAYN 153 (807)
Q Consensus 132 ~vi~I~G~gGiGKTtLa~~v~~ 153 (807)
++++|+|.+|+|||||++.+..
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~ 24 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMP 24 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5899999999999999999875
No 429
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=93.07 E-value=0.052 Score=52.74 Aligned_cols=25 Identities=28% Similarity=0.262 Sum_probs=22.9
Q ss_pred CCceEEEEEccCCChHHHHHHHHHc
Q 047321 129 KGLDVISLVGLGGIGKTTLAQLAYN 153 (807)
Q Consensus 129 ~~~~vi~I~G~gGiGKTtLa~~v~~ 153 (807)
...++|.|.|++|+||||.|+.+..
T Consensus 27 ~k~kiI~llGpPGsGKgTqa~~L~~ 51 (217)
T 3umf_A 27 AKAKVIFVLGGPGSGKGTQCEKLVQ 51 (217)
T ss_dssp TSCEEEEEECCTTCCHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHH
Confidence 4678999999999999999999986
No 430
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=93.06 E-value=0.31 Score=52.73 Aligned_cols=41 Identities=27% Similarity=0.303 Sum_probs=28.4
Q ss_pred HHHHHHHHhCCCCC---CCCCceEEEEEccCCChHHHHHHHHHc
Q 047321 113 KNELLSKLLCGSSE---QQKGLDVISLVGLGGIGKTTLAQLAYN 153 (807)
Q Consensus 113 ~~~l~~~L~~~~~~---~~~~~~vi~I~G~gGiGKTtLa~~v~~ 153 (807)
.+++.+.|...... .....++|.++|.+|+||||++..++.
T Consensus 79 ~~~l~~~l~~~~~~~~~~~~~~~vI~ivG~~GvGKTT~a~~LA~ 122 (433)
T 2xxa_A 79 RNELVAAMGEENQTLNLAAQPPAVVLMAGLQGAGKTTSVGKLGK 122 (433)
T ss_dssp HHHHHHHHCSSSCCCCCCSSSSEEEEEECSTTSSHHHHHHHHHH
T ss_pred HHHHHHHhccccccccccCCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 45566666432110 023578999999999999999988875
No 431
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=92.99 E-value=0.25 Score=50.58 Aligned_cols=88 Identities=25% Similarity=0.168 Sum_probs=46.7
Q ss_pred ceEEEEEccCCChHHHHHHHHHcCcccccccceEEEEEeCCCCC-HHHHHHHHHHHcCCCC---CCCccHHHHHHHHHHH
Q 047321 131 LDVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSNTFE-EISVAKAIIEGLGVSA---FGLSEFESLMKQIQEY 206 (807)
Q Consensus 131 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~-~~~~~~~i~~~l~~~~---~~~~~~~~~~~~l~~~ 206 (807)
..+++++|.+|+||||++..++.. ....=..+.++....... ....++...+..+... ....+...+.....+.
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~--~~~~g~~v~l~~~D~~r~~a~~ql~~~~~~~~v~v~~~~~~~~p~~~~~~~l~~ 175 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYF--YKKKGFKVGLVGADVYRPAALEQLQQLGQQIGVPVYGEPGEKDVVGIAKRGVEK 175 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHH--HHHTTCCEEEEECCCSSSHHHHHHHHHHHHHTCCEECCTTCCCHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH--HHHCCCeEEEEecCCCCHHHHHHHHHHhccCCeEEEecCCCCCHHHHHHHHHHH
Confidence 679999999999999999888752 221112344555433222 2222333444443321 1112333343333334
Q ss_pred Hh-CCceEEEEeCCC
Q 047321 207 IT-GKKIFLVLDDVW 220 (807)
Q Consensus 207 l~-~k~~LlVlDdv~ 220 (807)
++ ...-++|+|-.-
T Consensus 176 ~~~~~~D~ViIDTpg 190 (297)
T 1j8m_F 176 FLSEKMEIIIVDTAG 190 (297)
T ss_dssp HHHTTCSEEEEECCC
T ss_pred HHhCCCCEEEEeCCC
Confidence 43 444588889763
No 432
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=92.99 E-value=0.13 Score=51.00 Aligned_cols=116 Identities=16% Similarity=0.131 Sum_probs=60.3
Q ss_pred CceEEEEEccCCChHHHHHHHHHcCcccccccceEEEEEeCCCCCHHHHHHHHHHHcCCC--------------------
Q 047321 130 GLDVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSNTFEEISVAKAIIEGLGVS-------------------- 189 (807)
Q Consensus 130 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~-------------------- 189 (807)
.-.++.|.|.+|+|||++|..++.+. ....-..+++++.. .+...+.+.+... +..
T Consensus 29 ~G~l~~i~G~pG~GKT~l~l~~~~~~-~~~~~~~v~~~s~E--~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~d~~~~~~ 104 (251)
T 2zts_A 29 EGTTVLLTGGTGTGKTTFAAQFIYKG-AEEYGEPGVFVTLE--ERARDLRREMASF-GWDFEKYEKEGKIAIVDGVSSVV 104 (251)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHHHH-HHHHCCCEEEEESS--SCHHHHHHHHHTT-TCCHHHHHHTTSEEEEC------
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHH-HHhcCCCceeeccc--CCHHHHHHHHHHc-CCChHHHHhcCcchhhhhHHHHh
Confidence 45799999999999999998765421 12222345555543 3444444443221 100
Q ss_pred ---------CCCCccHHHHHHHHHHHHh-CCceEEEEeCCCC-----CCccChHHHHHhhcCC--CCCcEEEEEcCC
Q 047321 190 ---------AFGLSEFESLMKQIQEYIT-GKKIFLVLDDVWD-----GDYKKWDPFFSCLKNG--HHESKILITTHD 249 (807)
Q Consensus 190 ---------~~~~~~~~~~~~~l~~~l~-~k~~LlVlDdv~~-----~~~~~~~~l~~~l~~~--~~gs~IliTTR~ 249 (807)
.......+.+...+.+... .+.-++|+|++.. .+......+...+... ..+..+++|+..
T Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vviD~~~~l~~~~~~~~~~~~~~~~L~~~a~~~~i~vi~~~q~ 181 (251)
T 2zts_A 105 GLPSEEKFVLEDRFNVDNFLRYIYRVVKAINAKRLVIDSIPSIALRLEEERKIREVLLKLNTILLEMGVTTILTTEA 181 (251)
T ss_dssp -------------CCHHHHHHHHHHHHHHTTCSEEEEECHHHHHHHSSSGGGHHHHHHHHHHHHHHHCCEEEEEECC
T ss_pred hcccchhccccccccHHHHHHHHHHHHHhcCCcEEEEEcHHHHhhhccChHHHHHHHHHHHHHHHHcCCCeEEEEEE
Confidence 0111233445555555543 4566889998621 1223333333333321 246678888754
No 433
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=92.98 E-value=0.051 Score=54.67 Aligned_cols=23 Identities=35% Similarity=0.570 Sum_probs=21.1
Q ss_pred ceEEEEEccCCChHHHHHHHHHc
Q 047321 131 LDVISLVGLGGIGKTTLAQLAYN 153 (807)
Q Consensus 131 ~~vi~I~G~gGiGKTtLa~~v~~ 153 (807)
..+|.|.|++|+||||+|+.+..
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~ 26 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAK 26 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHH
Confidence 46899999999999999999986
No 434
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=92.98 E-value=0.036 Score=52.41 Aligned_cols=22 Identities=36% Similarity=0.468 Sum_probs=19.9
Q ss_pred eEEEEEccCCChHHHHHHHHHc
Q 047321 132 DVISLVGLGGIGKTTLAQLAYN 153 (807)
Q Consensus 132 ~vi~I~G~gGiGKTtLa~~v~~ 153 (807)
.+|.|.|+.|+||||+|+.+..
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~ 24 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAK 24 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 3589999999999999999976
No 435
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=92.92 E-value=0.054 Score=52.36 Aligned_cols=23 Identities=30% Similarity=0.443 Sum_probs=20.9
Q ss_pred ceEEEEEccCCChHHHHHHHHHc
Q 047321 131 LDVISLVGLGGIGKTTLAQLAYN 153 (807)
Q Consensus 131 ~~vi~I~G~gGiGKTtLa~~v~~ 153 (807)
..+|+|.|+.|+||||+|+.+..
T Consensus 4 ~~~I~i~G~~GsGKsT~~~~L~~ 26 (213)
T 2plr_A 4 GVLIAFEGIDGSGKSSQATLLKD 26 (213)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHHHH
Confidence 36899999999999999999986
No 436
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=92.87 E-value=0.041 Score=51.30 Aligned_cols=22 Identities=32% Similarity=0.400 Sum_probs=20.1
Q ss_pred eEEEEEccCCChHHHHHHHHHc
Q 047321 132 DVISLVGLGGIGKTTLAQLAYN 153 (807)
Q Consensus 132 ~vi~I~G~gGiGKTtLa~~v~~ 153 (807)
.+|.|.|+.|+||||+|+.+..
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~ 24 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELAR 24 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999999986
No 437
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=92.85 E-value=0.061 Score=51.24 Aligned_cols=25 Identities=32% Similarity=0.414 Sum_probs=22.7
Q ss_pred CCceEEEEEccCCChHHHHHHHHHc
Q 047321 129 KGLDVISLVGLGGIGKTTLAQLAYN 153 (807)
Q Consensus 129 ~~~~vi~I~G~gGiGKTtLa~~v~~ 153 (807)
....+|+|+|+.|+||||+|+.+..
T Consensus 10 ~~~~iIgltG~~GSGKSTva~~L~~ 34 (192)
T 2grj_A 10 HHHMVIGVTGKIGTGKSTVCEILKN 34 (192)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHH
T ss_pred ccceEEEEECCCCCCHHHHHHHHHH
Confidence 4678999999999999999999886
No 438
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=92.84 E-value=0.049 Score=52.11 Aligned_cols=23 Identities=26% Similarity=0.333 Sum_probs=20.9
Q ss_pred ceEEEEEccCCChHHHHHHHHHc
Q 047321 131 LDVISLVGLGGIGKTTLAQLAYN 153 (807)
Q Consensus 131 ~~vi~I~G~gGiGKTtLa~~v~~ 153 (807)
..+|+|.|+.|+||||+|+.+..
T Consensus 12 ~~~I~l~G~~GsGKsT~a~~L~~ 34 (199)
T 2bwj_A 12 CKIIFIIGGPGSGKGTQCEKLVE 34 (199)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 35899999999999999999986
No 439
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=92.81 E-value=0.057 Score=51.85 Aligned_cols=24 Identities=29% Similarity=0.206 Sum_probs=21.3
Q ss_pred CceEEEEEccCCChHHHHHHHHHc
Q 047321 130 GLDVISLVGLGGIGKTTLAQLAYN 153 (807)
Q Consensus 130 ~~~vi~I~G~gGiGKTtLa~~v~~ 153 (807)
...+|+|.|+.|+||||+|+.+..
T Consensus 19 ~~~~I~l~G~~GsGKST~a~~La~ 42 (201)
T 2cdn_A 19 SHMRVLLLGPPGAGKGTQAVKLAE 42 (201)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 445899999999999999999976
No 440
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=92.78 E-value=0.055 Score=51.35 Aligned_cols=24 Identities=25% Similarity=0.235 Sum_probs=21.5
Q ss_pred CceEEEEEccCCChHHHHHHHHHc
Q 047321 130 GLDVISLVGLGGIGKTTLAQLAYN 153 (807)
Q Consensus 130 ~~~vi~I~G~gGiGKTtLa~~v~~ 153 (807)
...+|+|.|+.|+||||+|+.+..
T Consensus 5 ~~~~I~l~G~~GsGKsT~~~~L~~ 28 (194)
T 1qf9_A 5 KPNVVFVLGGPGSGKGTQCANIVR 28 (194)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHH
T ss_pred cCcEEEEECCCCCCHHHHHHHHHH
Confidence 347899999999999999999976
No 441
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=92.72 E-value=0.054 Score=50.18 Aligned_cols=21 Identities=33% Similarity=0.414 Sum_probs=19.5
Q ss_pred EEEEEccCCChHHHHHHHHHc
Q 047321 133 VISLVGLGGIGKTTLAQLAYN 153 (807)
Q Consensus 133 vi~I~G~gGiGKTtLa~~v~~ 153 (807)
.|+|.|+.|+||||+|+.+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSR 22 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999986
No 442
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=92.67 E-value=1.1 Score=49.35 Aligned_cols=25 Identities=40% Similarity=0.421 Sum_probs=20.8
Q ss_pred CCceEEEEEccCCChHHHHHHHHHc
Q 047321 129 KGLDVISLVGLGGIGKTTLAQLAYN 153 (807)
Q Consensus 129 ~~~~vi~I~G~gGiGKTtLa~~v~~ 153 (807)
...++|+|+|.+|+||||++..++.
T Consensus 99 ~~~~vI~ivG~~GvGKTTl~~kLA~ 123 (504)
T 2j37_W 99 GKQNVIMFVGLQGSGKTTTCSKLAY 123 (504)
T ss_dssp S--EEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3577999999999999999988875
No 443
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=92.66 E-value=0.038 Score=52.37 Aligned_cols=114 Identities=14% Similarity=0.168 Sum_probs=69.5
Q ss_pred CcceEEEEEeec-cCCC-----CccccCCCCceeEEEeCCCCCCCCCCCCc-----cccccccCcccceeeeccccCCcc
Q 047321 466 GDKVRHLGLKFE-EGAS-----FPMSIHGLNRLRTLLIYDQSPYNPSLSSS-----ILPELFNKLACLRALVIRQSLRTL 534 (807)
Q Consensus 466 ~~~~r~L~l~~~-~~~~-----~~~~~~~l~~Lr~L~l~~~~~~~l~~~i~-----~LP~~i~~L~~L~~LdL~~~L~~L 534 (807)
...+++|++++| .+.. +...+...++|++|+|++| .+. .+...+...++|++|+|+.+
T Consensus 35 ~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n-------~i~~~g~~~l~~~L~~n~~L~~L~L~~N---- 103 (185)
T 1io0_A 35 DPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGT-------RSNDPVAFALAEMLKVNNTLKSLNVESN---- 103 (185)
T ss_dssp CTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTS-------CCCHHHHHHHHHHHHHCSSCCEEECCSS----
T ss_pred CCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCC-------CCChHHHHHHHHHHHhCCCcCEEECcCC----
Confidence 456888888887 6643 3455667788999999887 332 34555666677888887622
Q ss_pred CeeEecCccCCCcc--ccccccccccccCcccccC-CCCCCC-hhHHHHhhccCCCCCCeEEEEeecc
Q 047321 535 EKFVVGGGVDGSNT--CRLESLKNLQLLRECGIEG-LGNVSH-LDEAERLQLYNQQNLLRLRLRFGRV 598 (807)
Q Consensus 535 ~~l~~~~~~~~~~~--~~i~~L~~L~~L~~L~i~~-l~~~~~-~~~~~~~~l~~l~~L~~L~L~~~~~ 598 (807)
.++..+ .....|.....|+.|.+++ -..+.. ...+....+...++|++|+|++|.+
T Consensus 104 --------~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i 163 (185)
T 1io0_A 104 --------FISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQ 163 (185)
T ss_dssp --------CCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSH
T ss_pred --------cCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCC
Confidence 111101 1233456666788877731 112222 1123444566778999999998873
No 444
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=92.61 E-value=0.064 Score=52.26 Aligned_cols=41 Identities=20% Similarity=0.213 Sum_probs=29.7
Q ss_pred cccchHHHHHHHHhCCCCCCCCCceEEEEEccCCChHHHHHHHHHcC
Q 047321 108 GRVDEKNELLSKLLCGSSEQQKGLDVISLVGLGGIGKTTLAQLAYNN 154 (807)
Q Consensus 108 GR~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 154 (807)
+.++..+.+...+. .....+|+|+|.+|+|||||+..+...
T Consensus 13 ~~~~~~~~~~~~~~------~~~~~~i~i~G~~g~GKTTl~~~l~~~ 53 (221)
T 2wsm_A 13 ENKRLAEKNREALR------ESGTVAVNIMGAIGSGKTLLIERTIER 53 (221)
T ss_dssp HHHHHHHHHHHHHH------HHTCEEEEEEECTTSCHHHHHHHHHHH
T ss_pred hcHHHHHHHHHhhc------ccCceEEEEEcCCCCCHHHHHHHHHHH
Confidence 33444555555543 236789999999999999999988763
No 445
>2r9v_A ATP synthase subunit alpha; TM1612, structural genomics, JOI for structural genomics, JCSG, protein structure initiative ATP synthesis; HET: ATP PG4; 2.10A {Thermotoga maritima MSB8}
Probab=92.61 E-value=0.18 Score=54.70 Aligned_cols=96 Identities=15% Similarity=0.164 Sum_probs=57.0
Q ss_pred HHHHHHhCCCCCCCCCceEEEEEccCCChHHHHH-HHHHcCcccccccce-EEEEEeCCCCC-HHHHHHHHHHHcCC---
Q 047321 115 ELLSKLLCGSSEQQKGLDVISLVGLGGIGKTTLA-QLAYNNDEVKRNFEK-VIWVCVSNTFE-EISVAKAIIEGLGV--- 188 (807)
Q Consensus 115 ~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa-~~v~~~~~~~~~f~~-~~wv~~~~~~~-~~~~~~~i~~~l~~--- 188 (807)
+.++.|..- .+-..++|+|..|+|||+|| ..+.+.. .-+. .+++-+.+... +.++.+.+.+.=..
T Consensus 164 raID~l~Pi-----grGQR~~I~g~~g~GKT~Lal~~I~~~~----~~dv~~V~~~IGeR~~Ev~e~~~~~~~~g~m~rt 234 (515)
T 2r9v_A 164 KAIDSMIPI-----GRGQRELIIGDRQTGKTAIAIDTIINQK----GQGVYCIYVAIGQKKSAIARIIDKLRQYGAMEYT 234 (515)
T ss_dssp HHHHHHSCE-----ETTCBEEEEEETTSSHHHHHHHHHHTTT----TTTEEEEEEEESCCHHHHHHHHHHHHHTTGGGGE
T ss_pred ccccccccc-----ccCCEEEEEcCCCCCccHHHHHHHHHhh----cCCcEEEEEEcCCCcHHHHHHHHHHHhCCCccee
Confidence 467777643 34567899999999999995 5777742 2343 45666766543 44555555442111
Q ss_pred ----CCCCCccHHHH-----HHHHHHHH--hCCceEEEEeCC
Q 047321 189 ----SAFGLSEFESL-----MKQIQEYI--TGKKIFLVLDDV 219 (807)
Q Consensus 189 ----~~~~~~~~~~~-----~~~l~~~l--~~k~~LlVlDdv 219 (807)
...+....... ...+.+++ .|+..|+++||+
T Consensus 235 vvV~atad~p~~~r~~a~~~a~tiAEyfrd~G~dVLli~Dsl 276 (515)
T 2r9v_A 235 TVVVASASDPASLQYIAPYAGCAMGEYFAYSGRDALVVYDDL 276 (515)
T ss_dssp EEEEECTTSCHHHHHHHHHHHHHHHHHHHTTTCEEEEEEETH
T ss_pred EEEEECCCCCHHHHHHHHHHHHHHHHHHHHcCCcEEEEeccH
Confidence 11122111111 22355666 478999999998
No 446
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=92.59 E-value=0.065 Score=56.36 Aligned_cols=24 Identities=38% Similarity=0.357 Sum_probs=21.6
Q ss_pred CceEEEEEccCCChHHHHHHHHHc
Q 047321 130 GLDVISLVGLGGIGKTTLAQLAYN 153 (807)
Q Consensus 130 ~~~vi~I~G~gGiGKTtLa~~v~~ 153 (807)
...+++|+|++|+||||+++.++.
T Consensus 156 ~g~vi~lvG~nGsGKTTll~~Lag 179 (359)
T 2og2_A 156 KPAVIMIVGVNGGGKTTSLGKLAH 179 (359)
T ss_dssp SSEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCeEEEEEcCCCChHHHHHHHHHh
Confidence 567999999999999999998865
No 447
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=92.58 E-value=0.2 Score=59.31 Aligned_cols=67 Identities=13% Similarity=0.222 Sum_probs=43.2
Q ss_pred HHHHHHHHHHHHhCC---ceEEEEeCCCCC-CccChHHHHHhhcCC-CCCcEEEEEcCCHHHHHHhCCCceEeC
Q 047321 196 FESLMKQIQEYITGK---KIFLVLDDVWDG-DYKKWDPFFSCLKNG-HHESKILITTHDRSVALQLGSIDIIPV 264 (807)
Q Consensus 196 ~~~~~~~l~~~l~~k---~~LlVlDdv~~~-~~~~~~~l~~~l~~~-~~gs~IliTTR~~~v~~~~~~~~~~~l 264 (807)
.+...-.+...+..+ +-++|||+.... |......+...+... ..|..||++|++.++.. . ...++.+
T Consensus 867 GekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~TVIvisHdl~~i~-~-aDrIivL 938 (993)
T 2ygr_A 867 GEAQRVKLASELQKRSTGRTVYILDEPTTGLHFDDIRKLLNVINGLVDKGNTVIVIEHNLDVIK-T-SDWIIDL 938 (993)
T ss_dssp HHHHHHHHHHHHSSCCCSSEEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHT-T-CSEEEEE
T ss_pred HHHHHHHHHHHHHhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHH-h-CCEEEEE
Confidence 344444567777654 589999999765 444455555555432 24678999999988864 2 4455655
No 448
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=92.54 E-value=0.41 Score=51.66 Aligned_cols=24 Identities=33% Similarity=0.462 Sum_probs=22.0
Q ss_pred CceEEEEEccCCChHHHHHHHHHc
Q 047321 130 GLDVISLVGLGGIGKTTLAQLAYN 153 (807)
Q Consensus 130 ~~~vi~I~G~gGiGKTtLa~~v~~ 153 (807)
...+|.|+|++|+||||+|+.+..
T Consensus 257 ~~~lIil~G~pGSGKSTla~~L~~ 280 (416)
T 3zvl_A 257 NPEVVVAVGFPGAGKSTFIQEHLV 280 (416)
T ss_dssp SCCEEEEESCTTSSHHHHHHHHTG
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 467999999999999999999986
No 449
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=92.52 E-value=0.041 Score=51.84 Aligned_cols=23 Identities=30% Similarity=0.304 Sum_probs=16.9
Q ss_pred ceEEEEEccCCChHHHHHHHHHc
Q 047321 131 LDVISLVGLGGIGKTTLAQLAYN 153 (807)
Q Consensus 131 ~~vi~I~G~gGiGKTtLa~~v~~ 153 (807)
..+|.|.|+.|+||||+|+.+..
T Consensus 5 ~~~I~l~G~~GsGKST~a~~La~ 27 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAHTLHE 27 (183)
T ss_dssp CCEEEEECCC----CHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 45899999999999999999975
No 450
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=92.51 E-value=0.053 Score=54.31 Aligned_cols=148 Identities=13% Similarity=0.100 Sum_probs=74.1
Q ss_pred EEEEccCCChHHHHHHHHHcCcccccccceEEEEEeCCCCCHHHHHHHHHHHcCCCCCCCccHHHHHHHHHHHH-hCCce
Q 047321 134 ISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSNTFEEISVAKAIIEGLGVSAFGLSEFESLMKQIQEYI-TGKKI 212 (807)
Q Consensus 134 i~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l-~~k~~ 212 (807)
+.|+|++|+||||||+.++.. ... ..+.+.. .. +.... ..........+.+.. ...+.
T Consensus 52 ~ll~G~~G~GKTtl~~~i~~~--~~~---~~i~~~~------~~----~~~~~------~~~~~~~i~~~~~~~~~~~~~ 110 (254)
T 1ixz_A 52 VLLVGPPGVGKTHLARAVAGE--ARV---PFITASG------SD----FVEMF------VGVGAARVRDLFETAKRHAPC 110 (254)
T ss_dssp EEEECCTTSSHHHHHHHHHHH--TTC---CEEEEEH------HH----HHHSC------TTHHHHHHHHHHHHHTTSSSE
T ss_pred EEEECCCCCCHHHHHHHHHHH--hCC---CEEEeeH------HH----HHHHH------hhHHHHHHHHHHHHHHhcCCe
Confidence 899999999999999999873 221 1223321 11 11110 001111122222222 24568
Q ss_pred EEEEeCCCCC----------CccCh----HHHHHhhcCCC--CCcEEEEEcCCHHHHHH-h----CCCceEeCCCCChhh
Q 047321 213 FLVLDDVWDG----------DYKKW----DPFFSCLKNGH--HESKILITTHDRSVALQ-L----GSIDIIPVKELGEGE 271 (807)
Q Consensus 213 LlVlDdv~~~----------~~~~~----~~l~~~l~~~~--~gs~IliTTR~~~v~~~-~----~~~~~~~l~~L~~~~ 271 (807)
++++||+..- ....+ ..+...+..+. ....++.||....+... + .-...+.++..+.++
T Consensus 111 i~~~Deid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~g~~~~~~~i~~a~t~~p~~ld~~l~r~~rf~~~i~i~~p~~~~ 190 (254)
T 1ixz_A 111 IVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKG 190 (254)
T ss_dssp EEEEETHHHHHC---------CHHHHHHHHHHHHHHHTCCTTCCEEEEEEESCGGGSCGGGGSTTSSCEEEECCSCCHHH
T ss_pred EEEehhhhhhhcccCccccccchHHHHHHHHHHHHHhCCCCCCCEEEEEccCCchhCCHHHcCCCcCCeEEeeCCcCHHH
Confidence 9999998311 00111 22333333222 22345556666544211 1 113467888888888
Q ss_pred HHHHHHHHHhccCCccCccchHHHHHHHHHHcCCCH
Q 047321 272 CWLLFKQIAFLRRSFEDCEKLEPIGRKIASKCKGLP 307 (807)
Q Consensus 272 ~~~Lf~~~a~~~~~~~~~~~~~~~~~~I~~~c~glP 307 (807)
-.+++...+-.. ....... ...|++.+.|.-
T Consensus 191 r~~il~~~~~~~-~~~~~~~----~~~la~~~~G~~ 221 (254)
T 1ixz_A 191 REQILRIHARGK-PLAEDVD----LALLAKRTPGFV 221 (254)
T ss_dssp HHHHHHHHHTTS-CBCTTCC----HHHHHHTCTTCC
T ss_pred HHHHHHHHHcCC-CCCcccC----HHHHHHHcCCCC
Confidence 888887665221 1111112 345777777753
No 451
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=92.50 E-value=0.059 Score=51.23 Aligned_cols=21 Identities=43% Similarity=0.695 Sum_probs=19.7
Q ss_pred EEEEEccCCChHHHHHHHHHc
Q 047321 133 VISLVGLGGIGKTTLAQLAYN 153 (807)
Q Consensus 133 vi~I~G~gGiGKTtLa~~v~~ 153 (807)
+|+|.|+.|+||||+|+.+..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~ 22 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYE 22 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999986
No 452
>2qe7_A ATP synthase subunit alpha; blockage of ATP hydrolysis, F1-ATPase, single analysis, thermoalkaliphilic, hydrolase; 3.06A {Bacillus SP} PDB: 1sky_B
Probab=92.48 E-value=0.19 Score=54.51 Aligned_cols=96 Identities=18% Similarity=0.199 Sum_probs=57.0
Q ss_pred HHHHHHhCCCCCCCCCceEEEEEccCCChHHHHH-HHHHcCcccccccce-EEEEEeCCCCC-HHHHHHHHHHHcCCC--
Q 047321 115 ELLSKLLCGSSEQQKGLDVISLVGLGGIGKTTLA-QLAYNNDEVKRNFEK-VIWVCVSNTFE-EISVAKAIIEGLGVS-- 189 (807)
Q Consensus 115 ~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa-~~v~~~~~~~~~f~~-~~wv~~~~~~~-~~~~~~~i~~~l~~~-- 189 (807)
+.++.|..- .+-..++|+|..|+|||+|| ..+.+.. +-+. .+++-+.+... +.++.+.+.+.-...
T Consensus 151 raID~l~Pi-----grGQR~~Ifg~~g~GKT~Lal~~I~~~~----~~dv~~V~~~iGeR~~Ev~~~~~~~~~~g~m~~t 221 (502)
T 2qe7_A 151 KAIDSMIPI-----GRGQRELIIGDRQTGKTTIAIDTIINQK----GQDVICIYVAIGQKQSTVAGVVETLRQHDALDYT 221 (502)
T ss_dssp HHHHHSSCC-----BTTCBCEEEECSSSCHHHHHHHHHHGGG----SCSEEEEEEEESCCHHHHHHHHHHHHHTTCSTTE
T ss_pred eeccccccc-----ccCCEEEEECCCCCCchHHHHHHHHHhh----cCCcEEEEEECCCcchHHHHHHHHHhhCCCccee
Confidence 466777643 34567899999999999995 5777732 2343 46666776543 445555555422111
Q ss_pred -----CCCCccHHHH-----HHHHHHHH--hCCceEEEEeCC
Q 047321 190 -----AFGLSEFESL-----MKQIQEYI--TGKKIFLVLDDV 219 (807)
Q Consensus 190 -----~~~~~~~~~~-----~~~l~~~l--~~k~~LlVlDdv 219 (807)
..+....... ...+.+++ .|+..|+++||+
T Consensus 222 vvV~atad~p~~~r~~a~~~a~tiAEyfrd~G~dVLl~~Dsl 263 (502)
T 2qe7_A 222 IVVTASASEPAPLLYLAPYAGCAMGEYFMYKGKHALVVYDDL 263 (502)
T ss_dssp EEEEECTTSCHHHHHHHHHHHHHHHHHHHTTTCEEEEEEECH
T ss_pred EEEEECCCCCHHHHHHHHHHHHHHHHHHHHcCCcEEEEEecH
Confidence 1111111111 22355666 478999999998
No 453
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=92.48 E-value=0.21 Score=49.23 Aligned_cols=32 Identities=28% Similarity=0.334 Sum_probs=22.7
Q ss_pred HHHHHHHHhCCCCCCCCCceEEEEEccCCChHHHHHHHHH
Q 047321 113 KNELLSKLLCGSSEQQKGLDVISLVGLGGIGKTTLAQLAY 152 (807)
Q Consensus 113 ~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~ 152 (807)
.++++..+.. .+.+.|.|+.|+||||++..+.
T Consensus 66 q~~~i~~i~~--------g~~~~i~g~TGsGKTt~~~~~~ 97 (235)
T 3llm_A 66 ESEILEAISQ--------NSVVIIRGATGCGKTTQVPQFI 97 (235)
T ss_dssp HHHHHHHHHH--------CSEEEEECCTTSSHHHHHHHHH
T ss_pred HHHHHHHHhc--------CCEEEEEeCCCCCcHHhHHHHH
Confidence 4455555542 3589999999999998765543
No 454
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=92.40 E-value=0.067 Score=51.86 Aligned_cols=24 Identities=25% Similarity=0.268 Sum_probs=21.6
Q ss_pred CceEEEEEccCCChHHHHHHHHHc
Q 047321 130 GLDVISLVGLGGIGKTTLAQLAYN 153 (807)
Q Consensus 130 ~~~vi~I~G~gGiGKTtLa~~v~~ 153 (807)
...+|+|.|+.|+||||+|+.+..
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~L~~ 31 (215)
T 1nn5_A 8 RGALIVLEGVDRAGKSTQSRKLVE 31 (215)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 346899999999999999999986
No 455
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=92.38 E-value=0.065 Score=52.33 Aligned_cols=23 Identities=30% Similarity=0.234 Sum_probs=20.8
Q ss_pred ceEEEEEccCCChHHHHHHHHHc
Q 047321 131 LDVISLVGLGGIGKTTLAQLAYN 153 (807)
Q Consensus 131 ~~vi~I~G~gGiGKTtLa~~v~~ 153 (807)
...|.|.|+.|+||||+|+.+..
T Consensus 4 ~~~I~l~G~~GsGKsT~a~~La~ 26 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQAPNLQE 26 (220)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999999976
No 456
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=92.38 E-value=0.064 Score=51.86 Aligned_cols=24 Identities=29% Similarity=0.328 Sum_probs=21.7
Q ss_pred CceEEEEEccCCChHHHHHHHHHc
Q 047321 130 GLDVISLVGLGGIGKTTLAQLAYN 153 (807)
Q Consensus 130 ~~~vi~I~G~gGiGKTtLa~~v~~ 153 (807)
...+|+|.|+.|+||||+|+.+..
T Consensus 9 ~~~~I~l~G~~GsGKST~~~~L~~ 32 (212)
T 2wwf_A 9 KGKFIVFEGLDRSGKSTQSKLLVE 32 (212)
T ss_dssp CSCEEEEEESTTSSHHHHHHHHHH
T ss_pred cCCEEEEEcCCCCCHHHHHHHHHH
Confidence 356899999999999999999986
No 457
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=92.34 E-value=0.037 Score=53.70 Aligned_cols=21 Identities=33% Similarity=0.559 Sum_probs=19.6
Q ss_pred EEEEEccCCChHHHHHHHHHc
Q 047321 133 VISLVGLGGIGKTTLAQLAYN 153 (807)
Q Consensus 133 vi~I~G~gGiGKTtLa~~v~~ 153 (807)
+|+|.|+.|+||||+|+.+..
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~ 22 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSG 22 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 789999999999999999876
No 458
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=92.31 E-value=0.069 Score=54.74 Aligned_cols=24 Identities=17% Similarity=0.329 Sum_probs=21.8
Q ss_pred CceEEEEEccCCChHHHHHHHHHc
Q 047321 130 GLDVISLVGLGGIGKTTLAQLAYN 153 (807)
Q Consensus 130 ~~~vi~I~G~gGiGKTtLa~~v~~ 153 (807)
.-.+++|+|++|+|||||++.+..
T Consensus 125 ~Ge~vaIvGpsGsGKSTLl~lL~g 148 (305)
T 2v9p_A 125 KKNCLAFIGPPNTGKSMLCNSLIH 148 (305)
T ss_dssp TCSEEEEECSSSSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCcHHHHHHHHhh
Confidence 567999999999999999999875
No 459
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=92.31 E-value=0.079 Score=52.66 Aligned_cols=24 Identities=21% Similarity=0.086 Sum_probs=21.7
Q ss_pred CceEEEEEccCCChHHHHHHHHHc
Q 047321 130 GLDVISLVGLGGIGKTTLAQLAYN 153 (807)
Q Consensus 130 ~~~vi~I~G~gGiGKTtLa~~v~~ 153 (807)
...+|+|.|+.|+||||+|+.+..
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L~~ 51 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNLKK 51 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 567899999999999999999975
No 460
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=92.30 E-value=0.075 Score=51.49 Aligned_cols=24 Identities=38% Similarity=0.254 Sum_probs=21.7
Q ss_pred CceEEEEEccCCChHHHHHHHHHc
Q 047321 130 GLDVISLVGLGGIGKTTLAQLAYN 153 (807)
Q Consensus 130 ~~~vi~I~G~gGiGKTtLa~~v~~ 153 (807)
...+|.|.|+.|+||||+|+.+..
T Consensus 24 ~~~~i~~~G~~GsGKsT~~~~l~~ 47 (211)
T 1m7g_A 24 RGLTIWLTGLSASGKSTLAVELEH 47 (211)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHH
Confidence 457899999999999999999876
No 461
>3vr4_D V-type sodium ATPase subunit D; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_D* 3vr2_D* 3vr5_D 3vr6_D*
Probab=92.30 E-value=0.18 Score=54.18 Aligned_cols=100 Identities=14% Similarity=0.198 Sum_probs=57.0
Q ss_pred HHHHHHhCCCCCCCCCceEEEEEccCCChHHHHHHHHHcCcccc-cccc-eEEEEEeCCCC-CHHHHHHHHHHHcCC---
Q 047321 115 ELLSKLLCGSSEQQKGLDVISLVGLGGIGKTTLAQLAYNNDEVK-RNFE-KVIWVCVSNTF-EEISVAKAIIEGLGV--- 188 (807)
Q Consensus 115 ~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~-~~f~-~~~wv~~~~~~-~~~~~~~~i~~~l~~--- 188 (807)
+.++.|..-. +-..++|.|..|+|||+|+..+.+..... ++=+ .++++-+.+.. .+.++.+++.+.=..
T Consensus 140 raID~l~pig-----rGQr~~Ifgg~G~GKt~L~~~Ia~~~~~~~d~~~~~~V~~~iGeR~~Ev~e~~~~~~~~g~~~rt 214 (465)
T 3vr4_D 140 SAIDHLNTLV-----RGQKLPVFSGSGLPHKELAAQIARQATVLDSSDDFAVVFAAIGITFEEAEFFMEDFRQTGAIDRS 214 (465)
T ss_dssp HHHHTTSCCB-----TTCBCCEEECTTSCHHHHHHHHHHHCBCSSCSSCEEEEEEEEEECHHHHHHHHHHHHHHTGGGGE
T ss_pred eEEecccccc-----cCCEEEEeCCCCcChHHHHHHHHHHHHhccCCCceEEEEEEecCCcHHHHHHHHHHhhcCCccce
Confidence 3566665432 34457899999999999999988743321 1111 45566666543 345555555442101
Q ss_pred ----CCCCCccHHH-----HHHHHHHHHh---CCceEEEEeCC
Q 047321 189 ----SAFGLSEFES-----LMKQIQEYIT---GKKIFLVLDDV 219 (807)
Q Consensus 189 ----~~~~~~~~~~-----~~~~l~~~l~---~k~~LlVlDdv 219 (807)
...+...... ..-.+.++++ |+.+|+++||+
T Consensus 215 vvV~atsd~p~~~r~~a~~~a~tiAEyfrd~~G~~VLl~~Dsl 257 (465)
T 3vr4_D 215 VMFMNLANDPAIERIATPRMALTAAEYLAYEKGMHVLVIMTDM 257 (465)
T ss_dssp EEEEEETTSCHHHHHHHHHHHHHHHHHHHHTTCCEEEEEEECH
T ss_pred EEEEECCCCCHHHHHHHHHHHHHHHHHHHHhcCCeEEEEEcCh
Confidence 1112211111 1223566664 78999999998
No 462
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=92.27 E-value=0.097 Score=49.81 Aligned_cols=36 Identities=17% Similarity=0.121 Sum_probs=26.3
Q ss_pred HHHHHHHHhCCCCCCCCCceEEEEEccCCChHHHHHHHHHc
Q 047321 113 KNELLSKLLCGSSEQQKGLDVISLVGLGGIGKTTLAQLAYN 153 (807)
Q Consensus 113 ~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 153 (807)
+..+..++.. .+....+.|+|++|+||||+|..+++
T Consensus 45 ~~~l~~~~~~-----iPkkn~ili~GPPGtGKTt~a~ala~ 80 (212)
T 1tue_A 45 LGALKSFLKG-----TPKKNCLVFCGPANTGKSYFGMSFIH 80 (212)
T ss_dssp HHHHHHHHHT-----CTTCSEEEEESCGGGCHHHHHHHHHH
T ss_pred HHHHHHHHhc-----CCcccEEEEECCCCCCHHHHHHHHHH
Confidence 4455555542 22345799999999999999988887
No 463
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=92.23 E-value=0.082 Score=53.84 Aligned_cols=25 Identities=44% Similarity=0.682 Sum_probs=22.0
Q ss_pred CCceEEEEEccCCChHHHHHHHHHc
Q 047321 129 KGLDVISLVGLGGIGKTTLAQLAYN 153 (807)
Q Consensus 129 ~~~~vi~I~G~gGiGKTtLa~~v~~ 153 (807)
....+|+|.|+.|+||||+|+.+..
T Consensus 73 ~~~~iI~I~G~~GSGKSTva~~La~ 97 (281)
T 2f6r_A 73 SGLYVLGLTGISGSGKSSVAQRLKN 97 (281)
T ss_dssp TTCEEEEEEECTTSCHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 3567999999999999999999873
No 464
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=92.21 E-value=0.066 Score=52.58 Aligned_cols=24 Identities=25% Similarity=0.253 Sum_probs=21.0
Q ss_pred CceEEEEEccCCChHHHHHHHHHc
Q 047321 130 GLDVISLVGLGGIGKTTLAQLAYN 153 (807)
Q Consensus 130 ~~~vi~I~G~gGiGKTtLa~~v~~ 153 (807)
...+|+|.|+.|+||||+|+.+..
T Consensus 6 ~~~~I~l~G~~GsGKsT~a~~La~ 29 (227)
T 1zd8_A 6 RLLRAVIMGAPGSGKGTVSSRITT 29 (227)
T ss_dssp -CCEEEEEECTTSSHHHHHHHHHH
T ss_pred cCcEEEEECCCCCCHHHHHHHHHH
Confidence 346899999999999999999986
No 465
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=92.20 E-value=0.069 Score=50.94 Aligned_cols=21 Identities=38% Similarity=0.563 Sum_probs=19.6
Q ss_pred EEEEEccCCChHHHHHHHHHc
Q 047321 133 VISLVGLGGIGKTTLAQLAYN 153 (807)
Q Consensus 133 vi~I~G~gGiGKTtLa~~v~~ 153 (807)
+|+|.|+.|+||||+|+.+..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~ 22 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQ 22 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999986
No 466
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=92.16 E-value=0.086 Score=51.31 Aligned_cols=23 Identities=30% Similarity=0.349 Sum_probs=20.9
Q ss_pred ceEEEEEccCCChHHHHHHHHHc
Q 047321 131 LDVISLVGLGGIGKTTLAQLAYN 153 (807)
Q Consensus 131 ~~vi~I~G~gGiGKTtLa~~v~~ 153 (807)
..+|+|.|+.|+||||+++.+..
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999975
No 467
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=92.12 E-value=0.073 Score=51.09 Aligned_cols=24 Identities=29% Similarity=0.259 Sum_probs=21.5
Q ss_pred ceEEEEEccCCChHHHHHHHHHcC
Q 047321 131 LDVISLVGLGGIGKTTLAQLAYNN 154 (807)
Q Consensus 131 ~~vi~I~G~gGiGKTtLa~~v~~~ 154 (807)
..+|+|.|+.|+||||+++.+...
T Consensus 4 ~~~I~l~G~~GsGKsT~~~~L~~~ 27 (204)
T 2v54_A 4 GALIVFEGLDKSGKTTQCMNIMES 27 (204)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHT
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHH
Confidence 358999999999999999999873
No 468
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=92.10 E-value=0.06 Score=53.64 Aligned_cols=23 Identities=35% Similarity=0.462 Sum_probs=21.0
Q ss_pred ceEEEEEccCCChHHHHHHHHHc
Q 047321 131 LDVISLVGLGGIGKTTLAQLAYN 153 (807)
Q Consensus 131 ~~vi~I~G~gGiGKTtLa~~v~~ 153 (807)
..+|+|+|+.|+||||+++.+..
T Consensus 48 g~~i~l~G~~GsGKSTl~~~La~ 70 (250)
T 3nwj_A 48 GRSMYLVGMMGSGKTTVGKIMAR 70 (250)
T ss_dssp TCCEEEECSTTSCHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 45899999999999999999986
No 469
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=92.09 E-value=0.067 Score=58.84 Aligned_cols=22 Identities=27% Similarity=0.502 Sum_probs=20.0
Q ss_pred eEEEEEccCCChHHHHHHHHHc
Q 047321 132 DVISLVGLGGIGKTTLAQLAYN 153 (807)
Q Consensus 132 ~vi~I~G~gGiGKTtLa~~v~~ 153 (807)
+.+.|.|.+|+||||++..+..
T Consensus 46 ~~~li~G~aGTGKT~ll~~~~~ 67 (459)
T 3upu_A 46 HHVTINGPAGTGATTLTKFIIE 67 (459)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred CEEEEEeCCCCCHHHHHHHHHH
Confidence 3899999999999999988876
No 470
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=92.08 E-value=0.074 Score=53.75 Aligned_cols=21 Identities=38% Similarity=0.673 Sum_probs=19.2
Q ss_pred EEEEEccCCChHHHHHHHHHc
Q 047321 133 VISLVGLGGIGKTTLAQLAYN 153 (807)
Q Consensus 133 vi~I~G~gGiGKTtLa~~v~~ 153 (807)
.++|+|++|+|||||.+.++.
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g 24 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFK 24 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 589999999999999999875
No 471
>3gqb_B V-type ATP synthase beta chain; A3B3, V-ATPase, ATP synthesis, ATP-binding, hydrogen ION TRA hydrolase, ION transport; 2.80A {Thermus thermophilus HB8} PDB: 3a5c_D* 3a5d_D 3j0j_D*
Probab=92.07 E-value=0.12 Score=55.54 Aligned_cols=100 Identities=11% Similarity=0.133 Sum_probs=57.0
Q ss_pred HHHHHHhCCCCCCCCCceEEEEEccCCChHHHHHHHHHcCcccc--------cccc-eEEEEEeCCCC-CHHHHHHHHHH
Q 047321 115 ELLSKLLCGSSEQQKGLDVISLVGLGGIGKTTLAQLAYNNDEVK--------RNFE-KVIWVCVSNTF-EEISVAKAIIE 184 (807)
Q Consensus 115 ~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~--------~~f~-~~~wv~~~~~~-~~~~~~~~i~~ 184 (807)
+.++.|..-. +-..++|.|.+|+|||+|+..+++..... ++=+ .++++-+.+.. .+.++.+++.+
T Consensus 136 raID~l~pig-----rGQr~~Ifgg~G~GKt~L~~~Ia~~~~a~~~~~~~~~d~~~~~~V~~~iGeR~~Ev~e~~~~l~~ 210 (464)
T 3gqb_B 136 STIDVMNTLV-----RGQKLPIFSGSGLPANEIAAQIARQATVRPDLSGEGEKEEPFAVVFAAMGITQRELSYFIQEFER 210 (464)
T ss_dssp HHHHTTSCCB-----TTCBCCEEEETTSCHHHHHHHHHHHCBCCHHHHCCCSTTCCEEEEEEEEEECHHHHHHHHHHHHH
T ss_pred eeeecccccc-----cCCEEEEecCCCCCchHHHHHHHHHHHhcccccccccCCCceEEEEEEecCchHHHHHHHHHhhh
Confidence 3566665432 44567899999999999999988743321 1111 45566666543 34455555443
Q ss_pred Hc--CC-----CCCCCccHHH-----HHHHHHHHHh---CCceEEEEeCC
Q 047321 185 GL--GV-----SAFGLSEFES-----LMKQIQEYIT---GKKIFLVLDDV 219 (807)
Q Consensus 185 ~l--~~-----~~~~~~~~~~-----~~~~l~~~l~---~k~~LlVlDdv 219 (807)
.= .. ...+...... ..-.+.++++ |+..|+++||+
T Consensus 211 ~g~~~rtvvv~~t~d~p~~~r~~~~~~a~tiAEyfrd~~G~~VLl~~Ddl 260 (464)
T 3gqb_B 211 TGALSRSVLFLNKADDPTIERILTPRMALTVAEYLAFEHDYHVLVILTDM 260 (464)
T ss_dssp TSGGGGEEEEEEETTSCTHHHHHHHHHHHHHHHHHHHTTCCEEEEEEETH
T ss_pred cccccceEEEEECCCCCHHHHHHHHHHHHHHHHHHHHhcCCeEEEEEcCh
Confidence 21 10 1112222221 1233566664 68999999998
No 472
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=92.06 E-value=0.11 Score=49.27 Aligned_cols=26 Identities=27% Similarity=0.258 Sum_probs=22.4
Q ss_pred CCceEEEEEccCCChHHHHHHHHHcC
Q 047321 129 KGLDVISLVGLGGIGKTTLAQLAYNN 154 (807)
Q Consensus 129 ~~~~vi~I~G~gGiGKTtLa~~v~~~ 154 (807)
.....|+|+|.+|+|||||+..+...
T Consensus 46 ~~~~~i~vvG~~g~GKSsll~~l~~~ 71 (193)
T 2ged_A 46 SYQPSIIIAGPQNSGKTSLLTLLTTD 71 (193)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 34568899999999999999998864
No 473
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=92.06 E-value=0.072 Score=51.76 Aligned_cols=21 Identities=43% Similarity=0.520 Sum_probs=19.1
Q ss_pred EEEEEccCCChHHHHHHHHHc
Q 047321 133 VISLVGLGGIGKTTLAQLAYN 153 (807)
Q Consensus 133 vi~I~G~gGiGKTtLa~~v~~ 153 (807)
.|+|.|+.|+||||+|+.+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIE 22 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999999875
No 474
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=92.03 E-value=0.085 Score=49.28 Aligned_cols=24 Identities=25% Similarity=0.373 Sum_probs=21.8
Q ss_pred CceEEEEEccCCChHHHHHHHHHc
Q 047321 130 GLDVISLVGLGGIGKTTLAQLAYN 153 (807)
Q Consensus 130 ~~~vi~I~G~gGiGKTtLa~~v~~ 153 (807)
..++++|+|+.|+|||||++.+..
T Consensus 5 ~~~~i~i~G~sGsGKTTl~~~l~~ 28 (174)
T 1np6_A 5 MIPLLAFAAWSGTGKTTLLKKLIP 28 (174)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHH
T ss_pred cceEEEEEeCCCCCHHHHHHHHHH
Confidence 467999999999999999999876
No 475
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=92.02 E-value=0.066 Score=52.37 Aligned_cols=24 Identities=21% Similarity=0.162 Sum_probs=21.2
Q ss_pred CceEEEEEccCCChHHHHHHHHHc
Q 047321 130 GLDVISLVGLGGIGKTTLAQLAYN 153 (807)
Q Consensus 130 ~~~vi~I~G~gGiGKTtLa~~v~~ 153 (807)
....|.|.|+.|+||||+|+.+..
T Consensus 4 ~~~~I~l~G~~GsGKsT~~~~La~ 27 (222)
T 1zak_A 4 DPLKVMISGAPASGKGTQCELIKT 27 (222)
T ss_dssp CSCCEEEEESTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 345799999999999999999986
No 476
>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A*
Probab=91.96 E-value=0.88 Score=48.50 Aligned_cols=45 Identities=22% Similarity=0.229 Sum_probs=32.3
Q ss_pred ccccccchHHHHHHHHhCCCCCCCCCceEEEEEccCCChHHHHHHHHHc
Q 047321 105 GVCGRVDEKNELLSKLLCGSSEQQKGLDVISLVGLGGIGKTTLAQLAYN 153 (807)
Q Consensus 105 ~~vGR~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 153 (807)
.++|.....+++.+.+..-. ..... |.|.|..|+|||++|+.+..
T Consensus 138 ~~ig~s~~m~~l~~~i~~~a---~~~~~-vli~Ge~GtGK~~lAr~ih~ 182 (387)
T 1ny5_A 138 EYVFESPKMKEILEKIKKIS---CAECP-VLITGESGVGKEVVARLIHK 182 (387)
T ss_dssp CCCCCSHHHHHHHHHHHHHT---TCCSC-EEEECSTTSSHHHHHHHHHH
T ss_pred hhhhccHHhhHHHHHHHHhc---CCCCC-eEEecCCCcCHHHHHHHHHH
Confidence 46777766777766654422 22344 48999999999999999976
No 477
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=91.94 E-value=0.074 Score=52.37 Aligned_cols=25 Identities=24% Similarity=0.086 Sum_probs=22.5
Q ss_pred CCceEEEEEccCCChHHHHHHHHHc
Q 047321 129 KGLDVISLVGLGGIGKTTLAQLAYN 153 (807)
Q Consensus 129 ~~~~vi~I~G~gGiGKTtLa~~v~~ 153 (807)
....+|+|.|+.|+||||+++.+..
T Consensus 18 ~~g~~i~i~G~~GsGKSTl~~~L~~ 42 (230)
T 2vp4_A 18 TQPFTVLIEGNIGSGKTTYLNHFEK 42 (230)
T ss_dssp CCCEEEEEECSTTSCHHHHHHTTGG
T ss_pred CCceEEEEECCCCCCHHHHHHHHHh
Confidence 4567999999999999999999886
No 478
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=91.91 E-value=0.23 Score=63.10 Aligned_cols=85 Identities=19% Similarity=0.201 Sum_probs=55.5
Q ss_pred CCceEEEEEccCCChHHHHHHHHHcCcccccccceEEEEEeCCCCCHHHHHHHHHHHcCCCC-----CCCccHHHHHHHH
Q 047321 129 KGLDVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSNTFEEISVAKAIIEGLGVSA-----FGLSEFESLMKQI 203 (807)
Q Consensus 129 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~-----~~~~~~~~~~~~l 203 (807)
...++|.|+|++|+|||+||.++..... ..=..++|+++...++... ++.++... ......++....+
T Consensus 1425 ~~g~~vll~GppGtGKT~LA~ala~ea~--~~G~~v~Fi~~e~~~~~l~-----a~~~G~dl~~l~v~~~~~~E~~l~~~ 1497 (2050)
T 3cmu_A 1425 PMGRIVEIYGPESSGKTTLTLQVIAAAQ--REGKTCAFIDAEHALDPIY-----ARKLGVDIDNLLCSQPDTGEQALEIC 1497 (2050)
T ss_dssp ETTSEEEEECCTTSSHHHHHHHHHHHHH--TTTCCEEEECTTSCCCHHH-----HHHTTCCTTTCEEECCSSHHHHHHHH
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHHH--HcCCcEEEEEcccccCHHH-----HHHcCCCchhceeecCChHHHHHHHH
Confidence 3568999999999999999988876322 2212467788777776665 34444221 1123345555555
Q ss_pred HHHH-hCCceEEEEeCCC
Q 047321 204 QEYI-TGKKIFLVLDDVW 220 (807)
Q Consensus 204 ~~~l-~~k~~LlVlDdv~ 220 (807)
.+.. ..+.-+||+|++.
T Consensus 1498 ~~lvr~~~~~lVVIDsi~ 1515 (2050)
T 3cmu_A 1498 DALARSGAVDVIVVDSVA 1515 (2050)
T ss_dssp HHHHHHTCCSEEEESCGG
T ss_pred HHHHhcCCCCEEEEcChh
Confidence 5554 3678899999983
No 479
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=91.85 E-value=0.38 Score=52.67 Aligned_cols=51 Identities=20% Similarity=0.208 Sum_probs=33.8
Q ss_pred CceEEEEEccCCChHHHHHHHHHcCcccccccceEEEEEeCCCCCHHHHHHHHH
Q 047321 130 GLDVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSNTFEEISVAKAII 183 (807)
Q Consensus 130 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 183 (807)
...++.|.|.+|+||||||..++.+..... =..++|++.. .+..++...++
T Consensus 202 ~G~liiI~G~pG~GKTtl~l~ia~~~~~~~-g~~Vl~~s~E--~s~~~l~~r~~ 252 (454)
T 2r6a_A 202 RSDLIIVAARPSVGKTAFALNIAQNVATKT-NENVAIFSLE--MSAQQLVMRML 252 (454)
T ss_dssp TTCEEEEECCTTSCHHHHHHHHHHHHHHHS-SCCEEEEESS--SCHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHhC-CCcEEEEECC--CCHHHHHHHHH
Confidence 456999999999999999998876422211 1246676643 34456655554
No 480
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=91.84 E-value=0.079 Score=51.49 Aligned_cols=21 Identities=33% Similarity=0.455 Sum_probs=19.1
Q ss_pred EEEEEccCCChHHHHHHHHHc
Q 047321 133 VISLVGLGGIGKTTLAQLAYN 153 (807)
Q Consensus 133 vi~I~G~gGiGKTtLa~~v~~ 153 (807)
.|+|.|+.|+||||+|+.+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVE 22 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999999975
No 481
>2c61_A A-type ATP synthase non-catalytic subunit B; hydrolase, H+ ATPase, A1AO, ATP synthesis, hydrogen ION transport, ION transport; 1.5A {Methanosarcina mazei GO1} PDB: 3dsr_A* 3b2q_A* 2rkw_A* 3eiu_A*
Probab=91.83 E-value=0.13 Score=55.59 Aligned_cols=100 Identities=12% Similarity=0.131 Sum_probs=57.8
Q ss_pred HHHHHHhCCCCCCCCCceEEEEEccCCChHHHHHHHHHcCcccccc--cceEEEEEeCCCC-CHHHHHHHHHHHcCC---
Q 047321 115 ELLSKLLCGSSEQQKGLDVISLVGLGGIGKTTLAQLAYNNDEVKRN--FEKVIWVCVSNTF-EEISVAKAIIEGLGV--- 188 (807)
Q Consensus 115 ~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~--f~~~~wv~~~~~~-~~~~~~~~i~~~l~~--- 188 (807)
+.++.|..-. +-..++|+|.+|+|||+|+..++++....+. =+.++++-+.+.. .+.++.+++.+.=..
T Consensus 141 r~ID~l~pig-----rGQr~~Ifgg~G~GKt~Ll~~Ia~~~~~n~~~~~~~~V~~~iGER~~Ev~e~~~~~~~~g~m~rt 215 (469)
T 2c61_A 141 STIDGTNTLV-----RGQKLPIFSASGLPHNEIALQIARQASVPGSESAFAVVFAAMGITNEEAQYFMSDFEKTGALERA 215 (469)
T ss_dssp HHHHTTSCCB-----TTCBCCEEECTTSCHHHHHHHHHHHCBCTTCSSCEEEEEEEEEECHHHHHHHHHHHHHHSGGGGE
T ss_pred Eeeeeeeccc-----cCCEEEEECCCCCCHHHHHHHHHHHHhhccCCCCcEEEEEEccCCcHHHHHHHHHHHhccCccce
Confidence 4566666432 4456788999999999999999875333111 1245566665554 345555555543111
Q ss_pred ----CCCCCccHHH-----HHHHHHHHHh---CCceEEEEeCC
Q 047321 189 ----SAFGLSEFES-----LMKQIQEYIT---GKKIFLVLDDV 219 (807)
Q Consensus 189 ----~~~~~~~~~~-----~~~~l~~~l~---~k~~LlVlDdv 219 (807)
...+...... ..-.+.++++ |+.+|+++||+
T Consensus 216 vvV~~tsd~p~~~r~~~~~~a~tiAEyfrdd~G~dVLl~~Dsl 258 (469)
T 2c61_A 216 VVFLNLADDPAVERIVTPRMALTAAEYLAYEHGMHVLVILTDI 258 (469)
T ss_dssp EEEEEETTSCHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECH
T ss_pred EEEEECCCCCHHHHHHHHHHHHHHHHHHHHhcCCeEEEEEeCH
Confidence 1111111111 1223556654 79999999997
No 482
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=91.83 E-value=1.5 Score=46.34 Aligned_cols=32 Identities=6% Similarity=0.149 Sum_probs=18.4
Q ss_pred cceEEEEEeeccCCCC-ccccCCCCceeEEEeCC
Q 047321 467 DKVRHLGLKFEEGASF-PMSIHGLNRLRTLLIYD 499 (807)
Q Consensus 467 ~~~r~L~l~~~~~~~~-~~~~~~l~~Lr~L~l~~ 499 (807)
.+++.+.+... ++.+ ...|.+|.+|+.+.+..
T Consensus 46 ~~i~~v~ip~~-vt~Ig~~aF~~C~~L~~I~lp~ 78 (379)
T 4h09_A 46 DRISEVRVNSG-ITSIGEANFNSCYNMTKVTVAS 78 (379)
T ss_dssp GGCSEEEECTT-EEEECTTTTTTCTTCCEEEECT
T ss_pred cCCEEEEeCCC-ccChHHHHhhCCCCCCEEEeCC
Confidence 34555555432 2222 34677788888888765
No 483
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=91.81 E-value=0.081 Score=50.28 Aligned_cols=24 Identities=33% Similarity=0.448 Sum_probs=21.3
Q ss_pred ceEEEEEccCCChHHHHHHHHHcC
Q 047321 131 LDVISLVGLGGIGKTTLAQLAYNN 154 (807)
Q Consensus 131 ~~vi~I~G~gGiGKTtLa~~v~~~ 154 (807)
.-.|+|+|.+|+|||||++.+...
T Consensus 29 ~~kv~lvG~~g~GKSTLl~~l~~~ 52 (191)
T 1oix_A 29 LFKVVLIGDSGVGKSNLLSRFTRN 52 (191)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHhcC
Confidence 467899999999999999998764
No 484
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=91.80 E-value=0.072 Score=54.18 Aligned_cols=178 Identities=13% Similarity=0.086 Sum_probs=86.2
Q ss_pred CccccccchHHHHHHHHhCCCCC------CCCCceEEEEEccCCChHHHHHHHHHcCcccccccceEEEEEeCCCCCHHH
Q 047321 104 GGVCGRVDEKNELLSKLLCGSSE------QQKGLDVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSNTFEEIS 177 (807)
Q Consensus 104 ~~~vGR~~~~~~l~~~L~~~~~~------~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~ 177 (807)
.+++|.++.++++.+....-... .-.-.+-+.|+|++|+||||||+.++.. ... ..+.+.. ..
T Consensus 40 ~~i~g~~~~~~~l~~l~~~~~~~~~l~~~~~~~~~gvll~Gp~GtGKTtl~~~i~~~--~~~---~~i~~~~------~~ 108 (278)
T 1iy2_A 40 KDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGE--ARV---PFITASG------SD 108 (278)
T ss_dssp GGSSSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCCEEEEECCTTSSHHHHHHHHHHH--TTC---CEEEEEH------HH
T ss_pred HHhCChHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCcChHHHHHHHHHHH--cCC---CEEEecH------HH
Confidence 46888876666655443211000 0001122899999999999999999873 221 2233321 11
Q ss_pred HHHHHHHHcCCCCCCCccHHHHHHH-HHHHHhCCceEEEEeCCCCC----------CccChH----HHHHhhcCCC--CC
Q 047321 178 VAKAIIEGLGVSAFGLSEFESLMKQ-IQEYITGKKIFLVLDDVWDG----------DYKKWD----PFFSCLKNGH--HE 240 (807)
Q Consensus 178 ~~~~i~~~l~~~~~~~~~~~~~~~~-l~~~l~~k~~LlVlDdv~~~----------~~~~~~----~l~~~l~~~~--~g 240 (807)
+.... .......... ++..-...+.++++||+..- ....+. .+...+..+. ..
T Consensus 109 ----~~~~~------~~~~~~~i~~~~~~~~~~~~~i~~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~lsgg~~~~~ 178 (278)
T 1iy2_A 109 ----FVEMF------VGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTA 178 (278)
T ss_dssp ----HHHST------TTHHHHHHHHHHHHHHTSCSEEEEEETHHHHHCC--------CHHHHHHHHHHHHHHTTCCTTCC
T ss_pred ----HHHHH------hhHHHHHHHHHHHHHHhcCCcEEehhhhHhhhcccccccCCcchHHHHHHHHHHHHHhCCCCCCC
Confidence 11110 0011111222 22222346789999998310 001111 2222232222 22
Q ss_pred cEEEEEcCCHHHHH-H-h---CCCceEeCCCCChhhHHHHHHHHHhccCCccCccchHHHHHHHHHHcCCCH
Q 047321 241 SKILITTHDRSVAL-Q-L---GSIDIIPVKELGEGECWLLFKQIAFLRRSFEDCEKLEPIGRKIASKCKGLP 307 (807)
Q Consensus 241 s~IliTTR~~~v~~-~-~---~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~~~~I~~~c~glP 307 (807)
..++.||...++.. . . .-...+.++..+.++-.+++...+-.. ....... ...+++.+.|..
T Consensus 179 ~i~~a~t~~p~~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~~-~~~~~~~----~~~la~~~~G~~ 245 (278)
T 1iy2_A 179 IVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGK-PLAEDVD----LALLAKRTPGFV 245 (278)
T ss_dssp EEEEEEESCTTSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTS-CBCTTCC----HHHHHHTCTTCC
T ss_pred EEEEEecCCchhCCHhHcCCCcCCeEEEeCCcCHHHHHHHHHHHHccC-CCCcccC----HHHHHHHcCCCC
Confidence 34455565543311 1 1 123478899889888888887665221 1111111 345777777754
No 485
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=91.72 E-value=0.12 Score=47.71 Aligned_cols=23 Identities=26% Similarity=0.364 Sum_probs=20.7
Q ss_pred eEEEEEccCCChHHHHHHHHHcC
Q 047321 132 DVISLVGLGGIGKTTLAQLAYNN 154 (807)
Q Consensus 132 ~vi~I~G~gGiGKTtLa~~v~~~ 154 (807)
..|+|+|.+|+|||||.+.+...
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~~ 26 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTGE 26 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHCC
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 57899999999999999999864
No 486
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=91.71 E-value=0.088 Score=60.06 Aligned_cols=43 Identities=21% Similarity=0.189 Sum_probs=36.0
Q ss_pred CccccccchHHHHHHHHhCCCCCCCCCceEEEEEccCCChHHHHHHHHHcC
Q 047321 104 GGVCGRVDEKNELLSKLLCGSSEQQKGLDVISLVGLGGIGKTTLAQLAYNN 154 (807)
Q Consensus 104 ~~~vGR~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 154 (807)
.+++|.+..++.+...+.. ...+.|+|++|+||||||+.++..
T Consensus 41 ~~i~G~~~~l~~l~~~i~~--------g~~vll~Gp~GtGKTtlar~ia~~ 83 (604)
T 3k1j_A 41 DQVIGQEHAVEVIKTAANQ--------KRHVLLIGEPGTGKSMLGQAMAEL 83 (604)
T ss_dssp HHCCSCHHHHHHHHHHHHT--------TCCEEEECCTTSSHHHHHHHHHHT
T ss_pred ceEECchhhHhhccccccC--------CCEEEEEeCCCCCHHHHHHHHhcc
Confidence 4689998888888877763 247899999999999999999873
No 487
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=91.69 E-value=0.091 Score=49.42 Aligned_cols=22 Identities=23% Similarity=0.431 Sum_probs=19.7
Q ss_pred eEEEEEccCCChHHHHHHHHHc
Q 047321 132 DVISLVGLGGIGKTTLAQLAYN 153 (807)
Q Consensus 132 ~vi~I~G~gGiGKTtLa~~v~~ 153 (807)
.+.+|+|++|+|||||+..++.
T Consensus 27 g~~~i~G~NGsGKStll~ai~~ 48 (182)
T 3kta_A 27 GFTAIVGANGSGKSNIGDAILF 48 (182)
T ss_dssp SEEEEEECTTSSHHHHHHHHHH
T ss_pred CcEEEECCCCCCHHHHHHHHHH
Confidence 3889999999999999999864
No 488
>2ck3_A ATP synthase subunit alpha\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1bmf_A* 1e1q_A* 1e1r_A* 1e79_A* 1h8h_A* 1nbm_A* 1ohh_A* 1qo1_A 1w0j_A* 1w0k_A* 1h8e_A* 2jdi_A* 2wss_A* 2w6j_A 2w6e_A 2w6g_A 2w6f_A 2w6h_A 2w6i_A 1cow_A* ...
Probab=91.63 E-value=0.27 Score=53.43 Aligned_cols=100 Identities=16% Similarity=0.203 Sum_probs=58.0
Q ss_pred HHHHHHhCCCCCCCCCceEEEEEccCCChHHHHH-HHHHcCccc----ccccc-eEEEEEeCCCCC-HHHHHHHHHHHcC
Q 047321 115 ELLSKLLCGSSEQQKGLDVISLVGLGGIGKTTLA-QLAYNNDEV----KRNFE-KVIWVCVSNTFE-EISVAKAIIEGLG 187 (807)
Q Consensus 115 ~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa-~~v~~~~~~----~~~f~-~~~wv~~~~~~~-~~~~~~~i~~~l~ 187 (807)
+.++.|..- .+-..++|+|..|+|||+|| ..+.+.... ..+-+ .++++-+.+... +.++.+.+.+.=.
T Consensus 151 raID~l~Pi-----grGQR~~I~g~~g~GKT~Lal~~I~~q~~~~~~~~~~~d~~~V~~~IGeR~~Ev~~~~~~~~~~g~ 225 (510)
T 2ck3_A 151 KAVDSLVPI-----GRGQRELIIGDRQTGKTSIAIDTIINQKRFNDGTDEKKKLYCIYVAIGQKRSTVAQLVKRLTDADA 225 (510)
T ss_dssp HHHHHHSCC-----BTTCBCEEEESTTSSHHHHHHHHHHHTHHHHTSCCTTTCCEEEEEEESCCHHHHHHHHHHHHHTTC
T ss_pred eeecccccc-----ccCCEEEEecCCCCCchHHHHHHHHHHHhhccccccCCCeEEEEEECCCCcHHHHHHHHHHHhcCC
Confidence 467777653 24567899999999999995 567764321 01234 356777776653 4455555544211
Q ss_pred C-------CCCCCccHHHH-----HHHHHHHH--hCCceEEEEeCC
Q 047321 188 V-------SAFGLSEFESL-----MKQIQEYI--TGKKIFLVLDDV 219 (807)
Q Consensus 188 ~-------~~~~~~~~~~~-----~~~l~~~l--~~k~~LlVlDdv 219 (807)
. ...+....... ...+.+++ .|+..|+++||+
T Consensus 226 m~~tvvV~atad~p~~~r~~a~~~a~tiAEyfrd~G~dVLli~Dsl 271 (510)
T 2ck3_A 226 MKYTIVVSATASDAAPLQYLAPYSGCSMGEYFRDNGKHALIIYDDL 271 (510)
T ss_dssp GGGEEEEEECTTSCHHHHHHHHHHHHHHHHHHHTTTCEEEEEEETH
T ss_pred cccceEEEECCCCCHHHHHHHHHHHHHHHHHHHHcCCcEEEEEcCH
Confidence 1 11122111111 22355666 478999999998
No 489
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=91.54 E-value=0.098 Score=54.28 Aligned_cols=22 Identities=32% Similarity=0.300 Sum_probs=20.6
Q ss_pred eEEEEEccCCChHHHHHHHHHc
Q 047321 132 DVISLVGLGGIGKTTLAQLAYN 153 (807)
Q Consensus 132 ~vi~I~G~gGiGKTtLa~~v~~ 153 (807)
.+|+|.|+.|+||||||+.++.
T Consensus 8 ~lI~I~GptgSGKTtla~~La~ 29 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAK 29 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred ceEEEECCCcCcHHHHHHHHHH
Confidence 5899999999999999999886
No 490
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=91.51 E-value=0.79 Score=49.92 Aligned_cols=53 Identities=13% Similarity=0.051 Sum_probs=35.5
Q ss_pred CceEEEEEccCCChHHHHHHHHHcCcccccccceEEEEEeCCCCCHHHHHHHHHHH
Q 047321 130 GLDVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSNTFEEISVAKAIIEG 185 (807)
Q Consensus 130 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~ 185 (807)
...++.|.|.+|+||||||..++.+..... =..++|++.. .+..++...++..
T Consensus 199 ~G~l~ii~G~pg~GKT~lal~ia~~~a~~~-g~~vl~~slE--~~~~~l~~R~~~~ 251 (444)
T 2q6t_A 199 PGSLNIIAARPAMGKTAFALTIAQNAALKE-GVGVGIYSLE--MPAAQLTLRMMCS 251 (444)
T ss_dssp TTCEEEEEECTTSCHHHHHHHHHHHHHHTT-CCCEEEEESS--SCHHHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHHhC-CCeEEEEECC--CCHHHHHHHHHHH
Confidence 457999999999999999988876322211 1246676554 4556676666543
No 491
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=91.49 E-value=0.098 Score=51.34 Aligned_cols=23 Identities=22% Similarity=0.304 Sum_probs=20.9
Q ss_pred ceEEEEEccCCChHHHHHHHHHc
Q 047321 131 LDVISLVGLGGIGKTTLAQLAYN 153 (807)
Q Consensus 131 ~~vi~I~G~gGiGKTtLa~~v~~ 153 (807)
..+|+|.|++|+||||+|+.+..
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~ 31 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLAR 31 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 45899999999999999999975
No 492
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=91.43 E-value=0.12 Score=53.53 Aligned_cols=24 Identities=25% Similarity=0.317 Sum_probs=21.9
Q ss_pred CceEEEEEccCCChHHHHHHHHHc
Q 047321 130 GLDVISLVGLGGIGKTTLAQLAYN 153 (807)
Q Consensus 130 ~~~vi~I~G~gGiGKTtLa~~v~~ 153 (807)
..++|+|+|+.|+||||||..++.
T Consensus 39 ~~~lIvI~GPTgsGKTtLa~~LA~ 62 (339)
T 3a8t_A 39 KEKLLVLMGATGTGKSRLSIDLAA 62 (339)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHT
T ss_pred CCceEEEECCCCCCHHHHHHHHHH
Confidence 446999999999999999999987
No 493
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=91.43 E-value=0.1 Score=50.13 Aligned_cols=111 Identities=13% Similarity=0.077 Sum_probs=50.8
Q ss_pred CceEEEEEccCCChHHHHHHHHHcCcccccccceEEEEEeCCCCCHHHHHHHHHHHcCCCC--CCCccHHHHHHHHHHHH
Q 047321 130 GLDVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSNTFEEISVAKAIIEGLGVSA--FGLSEFESLMKQIQEYI 207 (807)
Q Consensus 130 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~--~~~~~~~~~~~~l~~~l 207 (807)
...+..++|.-|.||||.|......... ......++ .... +...-...+...++... ....+.+ .+.+.+
T Consensus 27 ~G~l~vitG~MgsGKTT~lL~~a~r~~~-~g~kVli~-k~~~--d~R~ge~~i~s~~g~~~~a~~~~~~~----~~~~~~ 98 (214)
T 2j9r_A 27 NGWIEVICGSMFSGKSEELIRRVRRTQF-AKQHAIVF-KPCI--DNRYSEEDVVSHNGLKVKAVPVSASK----DIFKHI 98 (214)
T ss_dssp SCEEEEEECSTTSCHHHHHHHHHHHHHH-TTCCEEEE-ECC-------------------CCEEECSSGG----GGGGGC
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHHHH-CCCEEEEE-Eecc--CCcchHHHHHhhcCCeeEEeecCCHH----HHHHHH
Confidence 4578899999999999988766553221 22233332 2111 11111123333333221 1111111 122222
Q ss_pred hCCceEEEEeCCCCCCccChHHHHHhhcCCCCCcEEEEEcCCHH
Q 047321 208 TGKKIFLVLDDVWDGDYKKWDPFFSCLKNGHHESKILITTHDRS 251 (807)
Q Consensus 208 ~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~IliTTR~~~ 251 (807)
.++--+|++|++.--+.+..+.+. .+.+ .|..||+|.++.+
T Consensus 99 ~~~~dvViIDEaQF~~~~~V~~l~-~l~~--~~~~Vi~~Gl~~D 139 (214)
T 2j9r_A 99 TEEMDVIAIDEVQFFDGDIVEVVQ-VLAN--RGYRVIVAGLDQD 139 (214)
T ss_dssp CSSCCEEEECCGGGSCTTHHHHHH-HHHH--TTCEEEEEECSBC
T ss_pred hcCCCEEEEECcccCCHHHHHHHH-HHhh--CCCEEEEEecccc
Confidence 333459999998554434443333 3222 3668999998643
No 494
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=91.41 E-value=0.16 Score=53.72 Aligned_cols=37 Identities=24% Similarity=0.362 Sum_probs=28.0
Q ss_pred HHHHHHHHhCCCCCCCCCceEEEEEccCCChHHHHHHHHHc
Q 047321 113 KNELLSKLLCGSSEQQKGLDVISLVGLGGIGKTTLAQLAYN 153 (807)
Q Consensus 113 ~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 153 (807)
..++.+.+... ..+..+|+|+|.+|+|||||+..+..
T Consensus 65 ~~~~~~~~~~~----~~~~~~I~i~G~~G~GKSTl~~~L~~ 101 (355)
T 3p32_A 65 AQQLLLRLLPD----SGNAHRVGITGVPGVGKSTAIEALGM 101 (355)
T ss_dssp HHHHHHHHGGG----CCCSEEEEEECCTTSSHHHHHHHHHH
T ss_pred HHHHHHHhHhh----cCCceEEEEECCCCCCHHHHHHHHHH
Confidence 45555555432 23678999999999999999988864
No 495
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=91.36 E-value=0.084 Score=51.39 Aligned_cols=23 Identities=26% Similarity=0.356 Sum_probs=20.5
Q ss_pred ceEEEEEccCCChHHHHHHHHHc
Q 047321 131 LDVISLVGLGGIGKTTLAQLAYN 153 (807)
Q Consensus 131 ~~vi~I~G~gGiGKTtLa~~v~~ 153 (807)
...|.|.|+.|+||||+|+.+..
T Consensus 5 ~~~I~l~G~~GsGKsT~a~~La~ 27 (217)
T 3be4_A 5 KHNLILIGAPGSGKGTQCEFIKK 27 (217)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 35789999999999999999976
No 496
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=91.36 E-value=0.095 Score=50.41 Aligned_cols=21 Identities=19% Similarity=0.396 Sum_probs=19.9
Q ss_pred EEEEEccCCChHHHHHHHHHc
Q 047321 133 VISLVGLGGIGKTTLAQLAYN 153 (807)
Q Consensus 133 vi~I~G~gGiGKTtLa~~v~~ 153 (807)
+|+|.|+.|+||||+|+.+..
T Consensus 4 ~i~i~G~~GsGKst~~~~la~ 24 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAA 24 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 899999999999999999976
No 497
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=91.34 E-value=1.3 Score=51.58 Aligned_cols=51 Identities=25% Similarity=0.212 Sum_probs=37.0
Q ss_pred CccccccchHHHHHHHHhCCCCC-------CCCCceEEEEEccCCChHHHHHHHHHcC
Q 047321 104 GGVCGRVDEKNELLSKLLCGSSE-------QQKGLDVISLVGLGGIGKTTLAQLAYNN 154 (807)
Q Consensus 104 ~~~vGR~~~~~~l~~~L~~~~~~-------~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 154 (807)
.++.|-++.+++|.+.+..+... +....+-|.++|++|.|||.+|+.+++.
T Consensus 477 ~diggl~~~k~~l~e~v~~p~~~p~~f~~~g~~~~~gvLl~GPPGtGKT~lAkaiA~e 534 (806)
T 3cf2_A 477 EDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANE 534 (806)
T ss_dssp TTCCSCHHHHHHHTTTTTTTTTCSGGGSSSCCCCCSCCEEESSTTSSHHHHHHHHHHT
T ss_pred HHhCCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEecCCCCCchHHHHHHHHH
Confidence 45778888888887766543211 0223456789999999999999999984
No 498
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=91.20 E-value=0.11 Score=52.95 Aligned_cols=23 Identities=22% Similarity=0.401 Sum_probs=21.0
Q ss_pred ceEEEEEccCCChHHHHHHHHHc
Q 047321 131 LDVISLVGLGGIGKTTLAQLAYN 153 (807)
Q Consensus 131 ~~vi~I~G~gGiGKTtLa~~v~~ 153 (807)
.++|+|+|+.|+||||||..++.
T Consensus 3 ~~~i~i~GptgsGKt~la~~La~ 25 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLAK 25 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred CcEEEEECCCcCCHHHHHHHHHH
Confidence 46899999999999999999986
No 499
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=91.18 E-value=0.36 Score=54.34 Aligned_cols=23 Identities=26% Similarity=0.375 Sum_probs=20.5
Q ss_pred ceEEEEEccCCChHHHHHHHHHc
Q 047321 131 LDVISLVGLGGIGKTTLAQLAYN 153 (807)
Q Consensus 131 ~~vi~I~G~gGiGKTtLa~~v~~ 153 (807)
.+++.|.|.+|+||||++..+..
T Consensus 204 ~~~~~I~G~pGTGKTt~i~~l~~ 226 (574)
T 3e1s_A 204 HRLVVLTGGPGTGKSTTTKAVAD 226 (574)
T ss_dssp CSEEEEECCTTSCHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHH
Confidence 36899999999999999988875
No 500
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=91.15 E-value=0.095 Score=54.43 Aligned_cols=25 Identities=40% Similarity=0.490 Sum_probs=22.6
Q ss_pred CceEEEEEccCCChHHHHHHHHHcC
Q 047321 130 GLDVISLVGLGGIGKTTLAQLAYNN 154 (807)
Q Consensus 130 ~~~vi~I~G~gGiGKTtLa~~v~~~ 154 (807)
..++++|+|+.|+|||||++.+...
T Consensus 3 ~i~v~~i~G~~GaGKTTll~~l~~~ 27 (318)
T 1nij_A 3 PIAVTLLTGFLGAGKTTLLRHILNE 27 (318)
T ss_dssp CEEEEEEEESSSSSCHHHHHHHHHS
T ss_pred cccEEEEEecCCCCHHHHHHHHHhh
Confidence 5789999999999999999999853
Done!