BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 047322
(343 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1BHE|A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora
Length = 376
Score = 80.9 bits (198), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 83/290 (28%), Positives = 124/290 (42%), Gaps = 43/290 (14%)
Query: 46 LRAWSSACYSNSPATLHVPRGLFLVKSISFNGPCRHRIVFQIDGTIIAPSSYWSLGNSG- 104
L A S++ + + P +L L + K ++ R V APSS + +G
Sbjct: 44 LSAGSTSVFLSGPLSLPSGVSLLIDKGVTL------RAVNNAKSFENAPSSCGVVDKNGK 97
Query: 105 ---FWILFYKVNRLSIHG-GTIDATGA--------GYWA------CRKSGKSCPPPTRSI 146
+I I+G GTID G +W +K ++ P R I
Sbjct: 98 GCDAFITAVSTTNSGIYGPGTIDGQGGVKLQDKKVSWWELAADAKVKKLKQNTP---RLI 154
Query: 147 SFVGASNIVVSGLTSINSRFFHIAIDECVNIMLRKLKINAPSWSPNTDGIHIQSSSGITI 206
+ N + ++ INS FH+ + K I PS + NTDGI SS ITI
Sbjct: 155 QINKSKNFTLYNVSLINSPNFHVVFSDGDGFTAWKTTIKTPSTARNTDGIDPMSSKNITI 214
Query: 207 SNSAIMTGDDCISVG-----PGTKNLWIERIACGPGHGIRMKKALAALGPMLLKMVLKNV 261
+ S I TGDD +++ T+N+ I G GHG+ + M + NV
Sbjct: 215 AYSNIATGDDNVAIKAYKGRAETRNISILHNDFGTGHGMSIGSET---------MGVYNV 265
Query: 262 TVTDSIFTGTQNGVRIKTWARPSNGFARNIRFRNIIMTKVFNPIIIDQNY 311
TV D GT NG+RIK+ + + G +R+ N++M V PI+ID Y
Sbjct: 266 TVDDLKMNGTTNGLRIKS-DKSAAGVVNGVRYSNVVMKNVAKPIVIDTVY 314
>pdb|1IA5|A Chain A, Polygalacturonase From Aspergillus Aculeatus
pdb|1IB4|A Chain A, Crystal Structure Of Polygalacturonase From Aspergillus
Aculeatus At Ph4.5
pdb|1IB4|B Chain B, Crystal Structure Of Polygalacturonase From Aspergillus
Aculeatus At Ph4.5
Length = 339
Score = 72.4 bits (176), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 66/228 (28%), Positives = 113/228 (49%), Gaps = 23/228 (10%)
Query: 119 GGTIDATGAGYWACR--KSGKSCPPPTRSISFVGASNIVVSGLTSINS--RFFHIAIDEC 174
G +I+ G+ +W GK+ P + S +N V+SGL +NS + F +A +
Sbjct: 81 GHSINGDGSRWWDGEGGNGGKTKPKFFAAHSL---TNSVISGLKIVNSPVQVFSVAGSDY 137
Query: 175 VNIMLRKLKINAPSWSPN----TDGIHIQSSSGITISNSAIMTGDDCISVGPGTKNLWIE 230
+ L+ + I+ N TD I +S+ +TIS + + DDC++V G +N++
Sbjct: 138 --LTLKDITIDNSDGDDNGGHNTDAFDIGTSTYVTISGATVYNQDDCVAVNSG-ENIYFS 194
Query: 231 RIACGPGHGIRMKKALAALGPMLLKMVLKNVTVTDSIFTGTQNGVRIKTWARPSNGFARN 290
C GHG+ ++ ++G V KNVT DS + NGVRIKT + G +
Sbjct: 195 GGYCSGGHGL----SIGSVGGRSDNTV-KNVTFVDSTIINSDNGVRIKT-NIDTTGSVSD 248
Query: 291 IRFRNIIMTKVFN-PIIIDQNYCPDNHCPHQTSGVTISGVTYRNIKGT 337
+ +++I +T + I++ QNY + P T+GV I+ N+ G+
Sbjct: 249 VTYKDITLTSIAKYGIVVQQNYGDTSSTP--TTGVPITDFVLDNVHGS 294
>pdb|1NHC|A Chain A, Structural Insights Into The Processivity Of
Endopolygalacturonase I From Aspergillus Niger
pdb|1NHC|B Chain B, Structural Insights Into The Processivity Of
Endopolygalacturonase I From Aspergillus Niger
pdb|1NHC|C Chain C, Structural Insights Into The Processivity Of
Endopolygalacturonase I From Aspergillus Niger
pdb|1NHC|D Chain D, Structural Insights Into The Processivity Of
Endopolygalacturonase I From Aspergillus Niger
pdb|1NHC|E Chain E, Structural Insights Into The Processivity Of
Endopolygalacturonase I From Aspergillus Niger
pdb|1NHC|F Chain F, Structural Insights Into The Processivity Of
Endopolygalacturonase I From Aspergillus Niger
Length = 336
Score = 71.6 bits (174), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 66/228 (28%), Positives = 110/228 (48%), Gaps = 20/228 (8%)
Query: 118 HGGTIDATGAGYWACRKS-GKSCPPPTRSISFVGASNIVVSGLTSINSRFFHIAIDECVN 176
G ID G+ +W + + G P I V S G+ N+ I++ + N
Sbjct: 76 DGAVIDGDGSRWWDSKGTNGGKTKPKFMYIHDVEDSTF--KGINIKNTPVQAISV-QATN 132
Query: 177 IMLRKLKINAPSWSPN----TDGIHIQSSSGITISNSAIMTGDDCISVGPGTKNLWIERI 232
+ L I+ N TDG I S+G+ IS + + DDCI++ G +++
Sbjct: 133 VHLNDFTIDNSDGDDNGGHNTDGFDISESTGVYISGATVKNQDDCIAINSG-ESISFTGG 191
Query: 233 ACGPGHGIRMKKALAALGPMLLKMVLKNVTVTDSIFTGTQNGVRIKTWARPSNGFARNIR 292
C GHG+ ++ ++G V KNVT++DS + + NGVRIKT + + G I
Sbjct: 192 TCSGGHGL----SIGSVGGRDDNTV-KNVTISDSTVSNSANGVRIKTIYKET-GDVSEIT 245
Query: 293 FRNIIMTKVFN-PIIIDQNYCPDNHCPHQT--SGVTISGVTYRNIKGT 337
+ NI ++ + + I+I+Q+Y +N P T +G+ I+ VT + GT
Sbjct: 246 YSNIQLSGITDYGIVIEQDY--ENGSPTGTPSTGIPITDVTVDGVTGT 291
>pdb|2IQ7|A Chain A, Crystal Structure Of The Polygalacturonase From
Colletotrichum Lupini And Its Implications For The
Interaction With Polygalacturonase- Inhibiting Proteins
pdb|2IQ7|B Chain B, Crystal Structure Of The Polygalacturonase From
Colletotrichum Lupini And Its Implications For The
Interaction With Polygalacturonase- Inhibiting Proteins
pdb|2IQ7|C Chain C, Crystal Structure Of The Polygalacturonase From
Colletotrichum Lupini And Its Implications For The
Interaction With Polygalacturonase- Inhibiting Proteins
pdb|2IQ7|D Chain D, Crystal Structure Of The Polygalacturonase From
Colletotrichum Lupini And Its Implications For The
Interaction With Polygalacturonase- Inhibiting Proteins
pdb|2IQ7|E Chain E, Crystal Structure Of The Polygalacturonase From
Colletotrichum Lupini And Its Implications For The
Interaction With Polygalacturonase- Inhibiting Proteins
pdb|2IQ7|F Chain F, Crystal Structure Of The Polygalacturonase From
Colletotrichum Lupini And Its Implications For The
Interaction With Polygalacturonase- Inhibiting Proteins
pdb|2IQ7|G Chain G, Crystal Structure Of The Polygalacturonase From
Colletotrichum Lupini And Its Implications For The
Interaction With Polygalacturonase- Inhibiting Proteins
Length = 339
Score = 65.9 bits (159), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 66/236 (27%), Positives = 116/236 (49%), Gaps = 19/236 (8%)
Query: 112 VNRLSIHGGTIDATGAGYWACRKS--GKSCPPPTRSISFVGASNIVVSGLTSINSRFFHI 169
+N S H +ID G+ +W + S GK+ P + S +SNI GL +N+
Sbjct: 72 INGASGH--SIDCQGSRWWDSKGSNGGKTKPKFFYAHSLK-SSNI--KGLNVLNTPVQAF 126
Query: 170 AIDECVNIMLRKLKINAPSWSP----NTDGIHIQSSSGITISNSAIMTGDDCISVGPGTK 225
+I+ + + + I+ + NTD + SS+G+ IS + + DDC+++ GT
Sbjct: 127 SINSATTLGVYDVIIDNSAGDSAGGHNTDAFDVGSSTGVYISGANVKNQDDCLAINSGT- 185
Query: 226 NLWIERIACGPGHGIRMKKALAALGPMLLKMVLKNVTVTDSIFTGTQNGVRIKTWARPSN 285
N+ C GHG+ ++ ++G V K VT+++S + NGVRIKT +
Sbjct: 186 NITFTGGTCSGGHGL----SIGSVGGRSDNTV-KTVTISNSKIVNSDNGVRIKT-VSGAT 239
Query: 286 GFARNIRFRNIIMTKVFN-PIIIDQNYCPDNHCPHQTSGVTISGVTYRNIKGTSAT 340
G + + I ++ + I+I+Q+Y + T+GV I+G+T I G+ A+
Sbjct: 240 GSVSGVTYSGITLSNIAKYGIVIEQDYENGSPTGTPTNGVPITGLTLSKITGSVAS 295
>pdb|1CZF|A Chain A, Endo-Polygalacturonase Ii From Aspergillus Niger
pdb|1CZF|B Chain B, Endo-Polygalacturonase Ii From Aspergillus Niger
Length = 362
Score = 65.5 bits (158), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 61/225 (27%), Positives = 106/225 (47%), Gaps = 17/225 (7%)
Query: 119 GGTIDATGAGYWACR-KSGKSCPPPTRSISFVGASNIVVSGLTSINSRFFHIAIDECVNI 177
G I+ GA +W + SGK P + G + ++GL N+ ++ + +I
Sbjct: 104 GHLINCDGARWWDGKGTSGKKKP---KFFYAHGLDSSSITGLNIKNTPLMAFSV-QANDI 159
Query: 178 MLRKLKINAPSWSP----NTDGIHIQSSSGITISNSAIMTGDDCISVGPGTKNLWIERIA 233
+ IN NTD + +S G+ I + DDC++V G +N+W
Sbjct: 160 TFTDVTINNADGDTQGGHNTDAFDVGNSVGVNIIKPWVHNQDDCLAVNSG-ENIWFTGGT 218
Query: 234 CGPGHGIRMKKALAALGPMLLKMVLKNVTVTDSIFTGTQNGVRIKTWARPSNGFARNIRF 293
C GHG+ ++ ++G V+KNVT+ S + ++N VRIKT + + G I +
Sbjct: 219 CIGGHGL----SIGSVGDRS-NNVVKNVTIEHSTVSNSENAVRIKTISGAT-GSVSEITY 272
Query: 294 RNIIMTKVFN-PIIIDQNYCPDNHCPHQTSGVTISGVTYRNIKGT 337
NI+M+ + + ++I Q+Y T+GVTI V ++ G+
Sbjct: 273 SNIVMSGISDYGVVIQQDYEDGKPTGKPTNGVTIQDVKLESVTGS 317
>pdb|1HG8|A Chain A, Endopolygalacturonase From The Phytopathogenic Fungus
Fusarium Moniliforme
Length = 349
Score = 62.8 bits (151), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 45/150 (30%), Positives = 77/150 (51%), Gaps = 8/150 (5%)
Query: 192 NTDGIHIQSSSGITISNSAIMTGDDCISVGPGTKNLWIERIACGPGHGIRMKKALAALGP 251
NTDG I SS +T+ N+ + DDC++V GT N+ + + C GHG+ ++ ++G
Sbjct: 165 NTDGFDISSSDHVTLDNNHVYNQDDCVAVTSGT-NIVVSNMYCSGGHGL----SIGSVGG 219
Query: 252 MLLKMVLKNVTVTDSIFTGTQNGVRIKTWARPSNGFARNIRFRNIIMTKVFN-PIIIDQN 310
V+ V S +QNG RIK+ + + G N+ ++NI +T + + + Q+
Sbjct: 220 K-SDNVVDGVQFLSSQVVNSQNGCRIKSNSGAT-GTINNVTYQNIALTNISTYGVDVQQD 277
Query: 311 YCPDNHCPHQTSGVTISGVTYRNIKGTSAT 340
Y T+GV IS + + + GT A+
Sbjct: 278 YLNGGPTGKPTNGVKISNIKFIKVTGTVAS 307
>pdb|3JUR|A Chain A, The Crystal Structure Of A Hyperthermoactive
Exopolygalacturonase From Thermotoga Maritima
pdb|3JUR|B Chain B, The Crystal Structure Of A Hyperthermoactive
Exopolygalacturonase From Thermotoga Maritima
pdb|3JUR|C Chain C, The Crystal Structure Of A Hyperthermoactive
Exopolygalacturonase From Thermotoga Maritima
pdb|3JUR|D Chain D, The Crystal Structure Of A Hyperthermoactive
Exopolygalacturonase From Thermotoga Maritima
Length = 448
Score = 56.2 bits (134), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 77/345 (22%), Positives = 134/345 (38%), Gaps = 68/345 (19%)
Query: 20 QSASAAYNVINFGAKPDGKSDATQAFLRAWSSACYSNSPATLHVPRGLFLVKSISFNGPC 79
Q N+++FGA+ DG++D +++F RA L VP G+FL I
Sbjct: 22 QIPDREVNLLDFGARGDGRTDCSESFKRAIEELS-KQGGGRLIVPEGVFLTGPIHL---- 76
Query: 80 RHRIVFQIDGTII---APSSYW----------SLGNSGFWILFYKVNRLSIHG-GTIDAT 125
+ I + GTI P Y L N + ++I G G +D +
Sbjct: 77 KSNIELHVKGTIKFIPDPERYLPVVLTRFEGIELYNYSPLVYALDCENVAITGSGVLDGS 136
Query: 126 GAGY----WACRK---------------------SGKSCPPPTRS-----------ISFV 149
W +K + + P R + F
Sbjct: 137 ADNEHWWPWKGKKDFGWKEGLPNQQEDVKKLKEMAERGTPVEERVFGKGHYLRPSFVQFY 196
Query: 150 GASNIVVSGLTSINSRFFHIAIDECVNIMLRKLKINAPSWSPNTDGIHIQSSSGITISNS 209
N++V G+ INS + I N+++R ++I+ S PN DGI +S + I
Sbjct: 197 RCRNVLVEGVKIINSPMWCIHPVLSENVIIRNIEIS--STGPNNDGIDPESCKYMLIEKC 254
Query: 210 AIMTGDDCISVGPGTKNLWIERIACGPGHGIRMKKAL----AALGPMLLKMVL----KNV 261
TGDD + + G ++ RI P I ++ L A+ G +++ + +NV
Sbjct: 255 RFDTGDDSVVIKSG-RDADGRRIGV-PSEYILVRDNLVISQASHGGLVIGSEMSGGVRNV 312
Query: 262 TVTDSIFTGTQNGVRIKTWARPSNGFARNIRFRNIIMTKVFNPII 306
++++ + +R+KT +R G+ NI F + + V +I
Sbjct: 313 VARNNVYMNVERALRLKTNSR-RGGYMENIFFIDNVAVNVSEEVI 356
>pdb|1K5C|A Chain A, Endopolygalacturonase I From Stereum Purpureum At 0.96 A
Resolution
pdb|1KCC|A Chain A, Endopolygalacturonase I From Stereum Purpureum Complexed
With A Galacturonate At 1.00 A Resolution.
pdb|1KCD|A Chain A, Endopolygalacturonase I From Stereum Purpureum Complexed
With Two Galacturonate At 1.15 A Resolution
Length = 335
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 43/149 (28%), Positives = 70/149 (46%), Gaps = 14/149 (9%)
Query: 168 HIAIDECVNIMLRKLKINAPSWSPNTDGIHIQSSSGITISNSAIMTGDDCISVGPGTKNL 227
H+ +D I + + + NTDG + S++ +TI N + DDCI++ G N+
Sbjct: 130 HLTLD---GITVDDFAGDTKNLGHNTDGFDV-SANNVTIQNCIVKNQDDCIAINDG-NNI 184
Query: 228 WIERIACGPGHGIRMKKALAALGPMLLKMVLKNVTVTDSIFTGTQNGVRIKTWARPSNGF 287
E C GHGI + A G + +V+K TVT S++ GVRIK ++
Sbjct: 185 RFENNQCSGGHGISI--GSIATGKHVSNVVIKGNTVTRSMY-----GVRIKAQRTATSAS 237
Query: 288 ARNIRFR-NIIMTKVFNPIIIDQNYCPDN 315
+ + N I ++I Q+Y PD+
Sbjct: 238 VSGVTYDANTISGIAKYGVLISQSY-PDD 265
>pdb|1RMG|A Chain A, Rhamnogalacturonase A From Aspergillus Aculeatus
Length = 422
Score = 46.2 bits (108), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 70/328 (21%), Positives = 134/328 (40%), Gaps = 40/328 (12%)
Query: 20 QSASAAYNVINFGAKPDGKSDATQAFLRAWSSACYSNSPATLHVPRGLFLVKS-ISFNGP 78
+ A+ N++++GA D +D A AW +AC S +++P G + + + ++ G
Sbjct: 15 KGATKTCNILSYGAVADNSTDVGPAITSAW-AAC--KSGGLVYIPSGNYALNTWVTLTGG 71
Query: 79 CRHRIVFQIDGTI----IAPSSYWSLGNSGFWILFYKVNRLSIHGGTIDATGAGYWACRK 134
I Q+DG I A + ++ ++ + LF ++ G + G Y A
Sbjct: 72 SATAI--QLDGIIYRTGTASGNMIAVTDTTDFELFSSTSK-----GAVQGFGYVYHAEGT 124
Query: 135 SGKSCPPPTRSISFVGASNIVVSGLTSINSRFFHIAIDECVNIMLRKLKINAPSWSPNTD 194
G R + ++ V + +++ FH +D C + + + I + D
Sbjct: 125 YGA------RILRLTDVTHFSVHDIILVDAPAFHFTMDTCSDGEVYNMAIRGGN-EGGLD 177
Query: 195 GIHIQSSSGITISNSAIMTGDDCISVGPGTKNLWIERIACGPGHGIRMKKALAALGPMLL 254
GI + S+ I + + + D+C++V N+ +E I C G A+ +LG
Sbjct: 178 GIDVWGSN-IWVHDVEVTNKDECVTVKSPANNILVESIYCNWSGGC----AMGSLG---- 228
Query: 255 KMVLKNVTVTDSIFTGTQNGVRIKTWARPSNGFA---RNIRFRNIIMTKVFNPIIIDQNY 311
+ VTD ++ + + SNG + N+ N I + ID +
Sbjct: 229 ----ADTDVTDIVYRNVYTWSSNQMYMIKSNGGSGTVSNVLLENFIGHGNAYSLDIDGYW 284
Query: 312 CPDNHCPHQTSGVTISGVTYRNIKGTSA 339
+ GV ++ +T +N KGT A
Sbjct: 285 --SSMTAVAGDGVQLNNITVKNWKGTEA 310
>pdb|2UVE|A Chain A, Structure Of Yersinia Enterocolitica Family 28
Exopolygalacturonase
pdb|2UVE|B Chain B, Structure Of Yersinia Enterocolitica Family 28
Exopolygalacturonase
pdb|2UVF|A Chain A, Structure Of Yersinia Enterocolitica Family 28
Exopolygalacturonase In Complex With Digalaturonic Acid
pdb|2UVF|B Chain B, Structure Of Yersinia Enterocolitica Family 28
Exopolygalacturonase In Complex With Digalaturonic Acid
Length = 608
Score = 45.4 bits (106), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 53/210 (25%), Positives = 85/210 (40%), Gaps = 28/210 (13%)
Query: 146 ISFVGASNIVVSGLTSINSRFFHIAIDECVNIMLRKLKINAPSWSPNTDGIHIQSSSGIT 205
++ G N+ ++G T N F I E N++ L I+ + N DGI +S +
Sbjct: 334 MTLRGVENVYLAGFTVRNPAFHGIMNLENHNVVANGL-IHQTYDANNGDGIEFGNSQNVM 392
Query: 206 ISNSAIMTGDDCISVGPGT----------KNLWIERIACGPGHGIRMKKALAALGPMLLK 255
+ N+ TGDDCI+ GT K W+ GHG A +
Sbjct: 393 VFNNFFDTGDDCINFAAGTGEKAQEQEPMKGAWLFNNYFRMGHG-------AIVTGSHTG 445
Query: 256 MVLKNVTVTDSIFTGTQNGVRIKTWARPSNGFARNIRFRNIIMTKVFNPIII------DQ 309
++++ +++ T G+R K+ + G ARN+ FRN M + +++ D
Sbjct: 446 AWIEDILAENNVMYLTDIGLRAKSTSTIGGG-ARNVTFRNNAMRDLAKQVMVMTLDYADS 504
Query: 310 NY---CPDNHCPHQTSGVTISGVTYRNIKG 336
N P P Q T+ VT N G
Sbjct: 505 NANIDYPPAKIPAQFYDFTLKNVTVDNSTG 534
>pdb|3EQN|A Chain A, Crystal Structure Of Beta-1,3-Glucanase From Phanerochaete
Chrysosporium (Lam55a)
pdb|3EQN|B Chain B, Crystal Structure Of Beta-1,3-Glucanase From Phanerochaete
Chrysosporium (Lam55a)
pdb|3EQO|A Chain A, Crystal Structure Of Beta-1,3-Glucanase From Phanerochaete
Chrysosporium (Lam55a) Gluconolactone Complex
pdb|3EQO|B Chain B, Crystal Structure Of Beta-1,3-Glucanase From Phanerochaete
Chrysosporium (Lam55a) Gluconolactone Complex
Length = 758
Score = 29.6 bits (65), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 28/54 (51%), Gaps = 8/54 (14%)
Query: 27 NVINFGAKPDGKSDATQAFLRAWSS------ACYSNS--PATLHVPRGLFLVKS 72
NV N+GAK DG +D T A A ++ C S + PA ++ P G + V S
Sbjct: 51 NVKNYGAKGDGNTDDTAAIQAAINAGGRCGQGCDSTTTQPALVYFPPGTYKVSS 104
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.136 0.427
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,491,697
Number of Sequences: 62578
Number of extensions: 431378
Number of successful extensions: 714
Number of sequences better than 100.0: 12
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 686
Number of HSP's gapped (non-prelim): 16
length of query: 343
length of database: 14,973,337
effective HSP length: 100
effective length of query: 243
effective length of database: 8,715,537
effective search space: 2117875491
effective search space used: 2117875491
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 52 (24.6 bits)