Query 047322
Match_columns 343
No_of_seqs 197 out of 1512
Neff 8.7
Searched_HMMs 46136
Date Fri Mar 29 09:59:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047322.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/047322hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02155 polygalacturonase 100.0 6.6E-73 1.4E-77 532.3 40.4 337 1-341 1-340 (394)
2 PLN02218 polygalacturonase ADP 100.0 2.4E-71 5.1E-76 527.4 41.7 320 18-342 60-386 (431)
3 PLN02793 Probable polygalactur 100.0 9E-70 2E-74 518.9 43.0 313 23-340 50-370 (443)
4 PLN03003 Probable polygalactur 100.0 5.3E-69 1.1E-73 509.5 35.3 328 1-342 1-335 (456)
5 PLN02188 polygalacturonase/gly 100.0 8.3E-68 1.8E-72 499.9 37.7 313 23-341 34-351 (404)
6 PLN03010 polygalacturonase 100.0 4.3E-67 9.2E-72 493.9 41.2 303 22-342 43-352 (409)
7 PF00295 Glyco_hydro_28: Glyco 100.0 2.2E-52 4.9E-57 389.2 27.6 282 53-340 1-284 (326)
8 COG5434 PGU1 Endopygalactoruna 100.0 1.1E-42 2.5E-47 334.1 27.2 269 23-306 80-403 (542)
9 TIGR03808 RR_plus_rpt_1 twin-a 100.0 6.7E-27 1.5E-31 218.4 23.1 246 23-300 35-337 (455)
10 PF12708 Pectate_lyase_3: Pect 99.9 8.7E-23 1.9E-27 180.7 18.3 213 25-275 1-224 (225)
11 PLN02793 Probable polygalactur 99.9 1.9E-19 4.2E-24 172.8 30.7 218 81-339 143-397 (443)
12 PLN02188 polygalacturonase/gly 99.8 2.6E-18 5.5E-23 163.2 30.9 221 81-339 122-377 (404)
13 PLN03003 Probable polygalactur 99.8 2.3E-18 5E-23 164.3 29.9 219 81-339 113-360 (456)
14 PLN02155 polygalacturonase 99.8 3.5E-18 7.5E-23 161.6 30.1 197 105-339 146-366 (394)
15 PLN02218 polygalacturonase ADP 99.8 1.1E-18 2.4E-23 166.9 26.7 195 105-338 193-410 (431)
16 PLN03010 polygalacturonase 99.8 4.3E-17 9.4E-22 154.6 30.0 215 81-339 139-377 (409)
17 PF00295 Glyco_hydro_28: Glyco 99.8 1.1E-17 2.4E-22 156.1 24.8 196 104-338 92-310 (326)
18 TIGR03805 beta_helix_1 paralle 99.8 1.1E-16 2.4E-21 148.3 21.9 226 45-308 1-250 (314)
19 PF03718 Glyco_hydro_49: Glyco 99.7 3.8E-15 8.3E-20 141.1 25.9 218 57-302 231-490 (582)
20 COG5434 PGU1 Endopygalactoruna 99.5 1.1E-12 2.4E-17 127.3 16.7 157 165-339 237-398 (542)
21 TIGR03805 beta_helix_1 paralle 99.1 1.8E-08 4E-13 93.5 23.1 163 112-301 31-203 (314)
22 PF12541 DUF3737: Protein of u 99.1 1.2E-09 2.6E-14 95.5 11.2 99 148-277 133-231 (277)
23 PF13229 Beta_helix: Right han 98.8 7.5E-08 1.6E-12 79.7 12.2 138 146-307 3-144 (158)
24 COG3420 NosD Nitrous oxidase a 98.8 2.5E-06 5.5E-11 77.2 21.0 118 104-233 69-189 (408)
25 PF12541 DUF3737: Protein of u 98.7 9E-08 1.9E-12 83.9 10.4 123 147-302 93-226 (277)
26 TIGR03808 RR_plus_rpt_1 twin-a 98.7 8.4E-07 1.8E-11 84.2 17.6 150 144-307 107-290 (455)
27 PF13229 Beta_helix: Right han 98.6 5.2E-07 1.1E-11 74.6 12.1 139 108-279 4-146 (158)
28 PF07602 DUF1565: Protein of u 98.6 3.1E-06 6.7E-11 75.1 16.9 167 43-278 16-195 (246)
29 PF03718 Glyco_hydro_49: Glyco 98.6 1.4E-05 3.1E-10 76.9 21.0 213 57-299 255-513 (582)
30 smart00656 Amb_all Amb_all dom 98.6 6.7E-06 1.5E-10 70.8 17.1 142 168-334 33-189 (190)
31 COG3866 PelB Pectate lyase [Ca 98.5 8.7E-06 1.9E-10 72.8 17.7 101 167-271 117-229 (345)
32 PF05048 NosD: Periplasmic cop 98.5 5.8E-06 1.3E-10 73.8 16.4 114 145-278 37-152 (236)
33 PF05048 NosD: Periplasmic cop 98.5 5.1E-06 1.1E-10 74.2 15.3 135 144-306 14-150 (236)
34 COG3866 PelB Pectate lyase [Ca 98.5 1E-05 2.2E-10 72.4 16.1 130 83-237 77-229 (345)
35 PLN02497 probable pectinestera 98.4 5.7E-05 1.2E-09 70.0 21.1 201 41-301 43-264 (331)
36 PF14592 Chondroitinas_B: Chon 98.4 3.6E-05 7.8E-10 73.1 18.0 32 41-75 3-34 (425)
37 PLN02480 Probable pectinestera 98.3 0.00048 1E-08 64.4 24.3 202 40-301 58-277 (343)
38 PRK10123 wcaM putative colanic 98.3 4.5E-05 9.8E-10 67.9 14.8 57 23-94 32-91 (464)
39 PF00544 Pec_lyase_C: Pectate 98.2 6.6E-06 1.4E-10 71.5 9.5 76 191-271 73-158 (200)
40 PLN02176 putative pectinestera 98.2 0.0008 1.7E-08 62.7 23.1 201 41-301 50-271 (340)
41 PLN02773 pectinesterase 98.2 0.00046 9.9E-09 63.8 20.9 211 42-301 17-240 (317)
42 PLN02682 pectinesterase family 98.2 0.001 2.3E-08 62.5 22.8 214 41-304 81-308 (369)
43 PRK10531 acyl-CoA thioesterase 98.1 0.00063 1.4E-08 64.9 21.2 145 145-304 199-379 (422)
44 PLN02634 probable pectinestera 98.1 0.0019 4.2E-08 60.5 22.9 211 41-301 67-291 (359)
45 PF12708 Pectate_lyase_3: Pect 98.1 0.0021 4.5E-08 56.3 22.0 123 154-305 94-224 (225)
46 smart00656 Amb_all Amb_all dom 98.1 0.00044 9.5E-09 59.6 16.8 134 145-300 33-188 (190)
47 PLN02170 probable pectinestera 98.0 0.0015 3.3E-08 64.2 22.0 208 41-304 236-455 (529)
48 PLN02708 Probable pectinestera 98.0 0.0012 2.7E-08 65.6 20.7 212 42-304 253-490 (553)
49 PLN02432 putative pectinestera 98.0 0.002 4.4E-08 58.9 20.4 201 41-301 22-230 (293)
50 PLN02916 pectinesterase family 98.0 0.0013 2.9E-08 64.2 20.0 211 41-304 198-429 (502)
51 PLN02665 pectinesterase family 98.0 0.0021 4.5E-08 60.6 20.6 205 41-301 79-298 (366)
52 PF01095 Pectinesterase: Pecti 97.9 0.00039 8.5E-09 64.1 14.7 207 41-305 11-240 (298)
53 PLN02671 pectinesterase 97.9 0.0037 8.1E-08 58.6 20.5 209 41-301 70-295 (359)
54 PLN02713 Probable pectinestera 97.9 0.0015 3.3E-08 65.1 19.0 208 42-302 262-490 (566)
55 PLN02933 Probable pectinestera 97.9 0.0037 8E-08 61.7 21.1 208 41-305 229-458 (530)
56 PLN02506 putative pectinestera 97.9 0.0021 4.6E-08 63.6 19.6 206 41-301 243-459 (537)
57 PLN02995 Probable pectinestera 97.8 0.0022 4.9E-08 63.6 19.5 214 41-305 234-465 (539)
58 PLN02304 probable pectinestera 97.8 0.0048 1.1E-07 58.2 20.7 203 42-301 87-312 (379)
59 PLN02201 probable pectinestera 97.8 0.0038 8.2E-08 61.5 20.6 207 41-304 217-445 (520)
60 PLN02488 probable pectinestera 97.8 0.0076 1.6E-07 58.9 21.2 213 41-304 208-436 (509)
61 PLN02416 probable pectinestera 97.7 0.0044 9.5E-08 61.6 19.6 208 41-301 241-466 (541)
62 PLN02301 pectinesterase/pectin 97.7 0.0043 9.4E-08 61.6 19.5 211 41-304 247-475 (548)
63 PLN03043 Probable pectinestera 97.7 0.0052 1.1E-07 61.1 19.6 210 41-304 234-465 (538)
64 PLN02313 Pectinesterase/pectin 97.7 0.0048 1E-07 61.9 19.5 212 41-304 286-514 (587)
65 PLN02484 probable pectinestera 97.7 0.0065 1.4E-07 61.0 20.2 212 42-305 284-513 (587)
66 PLN02745 Putative pectinestera 97.7 0.0073 1.6E-07 60.7 20.1 209 41-302 296-522 (596)
67 PLN02468 putative pectinestera 97.7 0.0082 1.8E-07 60.1 20.4 203 42-301 270-490 (565)
68 PLN02990 Probable pectinestera 97.7 0.01 2.2E-07 59.4 21.1 212 41-305 270-500 (572)
69 PLN02197 pectinesterase 97.6 0.0078 1.7E-07 60.3 19.3 214 41-301 286-514 (588)
70 PLN02314 pectinesterase 97.6 0.0098 2.1E-07 59.8 19.7 210 41-304 289-512 (586)
71 PLN02217 probable pectinestera 97.6 0.01 2.2E-07 60.1 19.5 205 41-301 261-486 (670)
72 COG4677 PemB Pectin methyleste 97.4 0.013 2.7E-07 53.4 15.7 227 40-300 92-350 (405)
73 PF01696 Adeno_E1B_55K: Adenov 97.4 0.047 1E-06 51.5 20.0 85 150-241 119-205 (386)
74 PF00544 Pec_lyase_C: Pectate 97.3 0.0022 4.9E-08 55.7 10.1 116 149-278 43-188 (200)
75 PF12218 End_N_terminal: N ter 97.1 0.00065 1.4E-08 45.9 3.6 37 33-73 1-38 (67)
76 COG3420 NosD Nitrous oxidase a 96.3 0.44 9.4E-06 44.0 16.8 118 109-242 125-244 (408)
77 PF03211 Pectate_lyase: Pectat 95.6 0.74 1.6E-05 40.2 14.6 74 152-231 61-135 (215)
78 PLN02480 Probable pectinestera 95.2 2.8 6E-05 39.5 20.7 113 171-301 128-252 (343)
79 PF03211 Pectate_lyase: Pectat 95.1 2.1 4.5E-05 37.4 16.0 129 175-333 61-194 (215)
80 TIGR03804 para_beta_helix para 94.5 0.06 1.3E-06 34.3 3.6 39 195-234 1-39 (44)
81 TIGR03804 para_beta_helix para 94.2 0.098 2.1E-06 33.3 4.2 41 168-213 1-41 (44)
82 PF01696 Adeno_E1B_55K: Adenov 91.9 7.9 0.00017 36.9 14.7 86 171-275 117-204 (386)
83 PLN02698 Probable pectinestera 90.9 4.7 0.0001 40.0 12.7 144 147-305 265-423 (497)
84 PF08480 Disaggr_assoc: Disagg 90.6 4.7 0.0001 34.1 10.5 62 152-213 2-75 (198)
85 PLN02217 probable pectinestera 90.1 4.9 0.00011 41.2 12.3 114 172-301 334-452 (670)
86 PLN02468 putative pectinestera 89.9 5.4 0.00012 40.3 12.4 114 172-301 342-460 (565)
87 PF08480 Disaggr_assoc: Disagg 89.3 3.6 7.8E-05 34.8 8.9 93 202-301 2-109 (198)
88 PF14592 Chondroitinas_B: Chon 89.3 3.2 6.9E-05 40.1 9.7 141 153-302 200-364 (425)
89 PLN02634 probable pectinestera 89.0 10 0.00022 36.0 12.7 112 173-301 147-266 (359)
90 PF07602 DUF1565: Protein of u 88.7 8.8 0.00019 34.4 11.5 129 169-336 91-224 (246)
91 PLN02197 pectinesterase 88.3 12 0.00025 38.0 13.4 115 171-301 360-480 (588)
92 PRK10531 acyl-CoA thioesterase 88.2 14 0.0003 35.8 13.2 118 170-302 201-337 (422)
93 PRK10123 wcaM putative colanic 79.0 11 0.00023 34.4 7.7 80 195-279 261-357 (464)
94 PLN02773 pectinesterase 78.4 30 0.00065 32.3 10.8 113 172-301 99-212 (317)
95 smart00722 CASH Domain present 76.5 35 0.00076 26.8 11.7 68 149-219 73-144 (146)
96 PLN02698 Probable pectinestera 76.1 53 0.0011 32.7 12.4 82 173-270 268-350 (497)
97 PF02402 Lysis_col: Lysis prot 73.9 1.8 4E-05 27.3 1.1 28 1-32 1-28 (46)
98 PF09251 PhageP22-tail: Salmon 71.9 1E+02 0.0022 29.9 15.2 106 201-339 263-398 (549)
99 PF09251 PhageP22-tail: Salmon 69.1 19 0.00041 34.6 7.0 71 224-297 263-346 (549)
100 PLN02665 pectinesterase family 64.7 1.2E+02 0.0026 28.9 11.7 122 170-307 149-278 (366)
101 PF01095 Pectinesterase: Pecti 62.5 66 0.0014 29.7 9.4 67 173-242 85-153 (298)
102 PLN02708 Probable pectinestera 62.4 85 0.0019 31.8 10.7 114 172-301 327-449 (553)
103 smart00710 PbH1 Parallel beta- 57.2 12 0.00026 19.6 2.2 19 260-278 3-22 (26)
104 PRK10081 entericidin B membran 55.8 15 0.00033 23.8 2.7 12 40-51 30-41 (48)
105 PLN02170 probable pectinestera 55.7 1.9E+02 0.0042 29.0 11.7 116 170-301 308-427 (529)
106 PF08139 LPAM_1: Prokaryotic m 54.1 9.6 0.00021 21.1 1.4 11 2-12 8-18 (25)
107 PLN02916 pectinesterase family 52.9 1.5E+02 0.0033 29.5 10.5 115 171-301 273-392 (502)
108 PLN02671 pectinesterase 51.9 2.2E+02 0.0048 27.1 12.1 114 171-301 150-270 (359)
109 PLN02745 Putative pectinestera 50.3 1.5E+02 0.0033 30.3 10.3 113 172-301 369-487 (596)
110 PLN02488 probable pectinestera 49.4 2.3E+02 0.005 28.3 11.0 114 172-302 281-400 (509)
111 PLN02432 putative pectinestera 49.3 2.2E+02 0.0047 26.3 10.4 112 172-301 91-205 (293)
112 PLN02416 probable pectinestera 48.4 1.6E+02 0.0035 29.7 10.1 115 171-301 313-432 (541)
113 PLN02176 putative pectinestera 46.9 2.6E+02 0.0056 26.4 13.9 105 147-270 151-270 (340)
114 COG4677 PemB Pectin methyleste 46.8 75 0.0016 29.6 6.7 112 174-301 188-319 (405)
115 PLN02313 Pectinesterase/pectin 46.8 1.9E+02 0.0041 29.6 10.4 114 172-301 359-477 (587)
116 PLN02301 pectinesterase/pectin 45.5 2E+02 0.0044 29.0 10.2 115 171-301 319-438 (548)
117 PLN02201 probable pectinestera 45.4 2.5E+02 0.0055 28.2 10.8 115 171-301 289-408 (520)
118 PRK09810 entericidin A; Provis 44.5 21 0.00045 22.4 2.0 14 1-14 1-14 (41)
119 PLN02506 putative pectinestera 43.9 1.8E+02 0.0039 29.4 9.5 116 170-301 314-434 (537)
120 PLN02995 Probable pectinestera 43.7 1.8E+02 0.0039 29.4 9.5 114 172-301 309-427 (539)
121 PF13956 Ibs_toxin: Toxin Ibs, 43.4 15 0.00033 18.5 1.0 11 1-11 1-11 (19)
122 PLN02713 Probable pectinestera 43.3 2.3E+02 0.005 28.8 10.3 113 172-301 337-455 (566)
123 PLN02484 probable pectinestera 42.9 2.2E+02 0.0048 29.1 10.1 115 171-301 356-475 (587)
124 PLN02990 Probable pectinestera 42.5 2.6E+02 0.0056 28.5 10.5 115 172-302 344-463 (572)
125 PLN02314 pectinesterase 41.9 2.4E+02 0.0052 28.8 10.2 115 171-302 361-481 (586)
126 COG4259 Uncharacterized protei 41.7 43 0.00093 25.6 3.7 63 1-67 1-74 (121)
127 PLN03043 Probable pectinestera 41.2 2.4E+02 0.0053 28.5 10.0 114 171-301 309-428 (538)
128 PRK10053 hypothetical protein; 40.9 18 0.00039 29.0 1.7 19 1-19 1-19 (130)
129 PLN02682 pectinesterase family 40.5 3.4E+02 0.0073 26.0 14.5 103 149-270 193-304 (369)
130 PRK15240 resistance to complem 38.6 33 0.00072 29.3 3.1 17 1-17 1-17 (185)
131 PF11106 YjbE: Exopolysacchari 37.9 26 0.00057 25.1 1.9 16 1-16 1-16 (80)
132 TIGR02052 MerP mercuric transp 37.1 23 0.00051 25.0 1.8 16 1-16 1-16 (92)
133 PLN02933 Probable pectinestera 36.9 4.6E+02 0.0099 26.5 12.6 115 171-301 301-420 (530)
134 PF11948 DUF3465: Protein of u 36.7 2.2E+02 0.0048 22.8 10.2 14 1-14 1-14 (131)
135 KOG1777 Putative Zn-finger pro 36.6 4.2E+02 0.0091 26.0 12.3 187 43-280 33-251 (625)
136 PRK09752 adhesin; Provisional 36.1 6.6E+02 0.014 28.1 16.8 12 152-163 121-132 (1250)
137 PLN02304 probable pectinestera 35.7 4.1E+02 0.0088 25.5 14.2 104 148-270 191-311 (379)
138 PF07437 YfaZ: YfaZ precursor; 35.4 29 0.00063 29.5 2.2 22 1-22 1-22 (180)
139 PF05342 Peptidase_M26_N: M26 34.2 26 0.00056 31.4 1.8 12 64-75 154-166 (250)
140 COG5510 Predicted small secret 34.1 79 0.0017 20.0 3.4 12 40-51 30-41 (44)
141 TIGR02791 VirB5 P-type DNA tra 33.3 53 0.0011 28.8 3.6 16 1-16 1-16 (220)
142 PRK11627 hypothetical protein; 33.1 46 0.00099 28.6 3.1 22 1-22 1-22 (192)
143 PF03032 Brevenin: Brevenin/es 33.0 27 0.00059 22.5 1.3 18 1-18 3-20 (46)
144 PLN02497 probable pectinestera 32.6 4.3E+02 0.0093 24.9 10.0 54 150-213 148-202 (331)
145 PRK09408 ompX outer membrane p 31.5 38 0.00081 28.6 2.3 10 1-10 1-10 (171)
146 PF15284 PAGK: Phage-encoded v 30.9 40 0.00087 23.0 1.9 16 1-16 1-17 (61)
147 PF10731 Anophelin: Thrombin i 30.5 42 0.00092 22.8 1.9 12 1-12 1-12 (65)
148 PF11777 DUF3316: Protein of u 30.4 38 0.00083 26.3 2.0 13 1-13 1-13 (114)
149 COG4704 Uncharacterized protei 30.3 1.4E+02 0.003 24.0 5.1 37 39-75 59-96 (151)
150 TIGR00156 conserved hypothetic 29.9 36 0.00077 27.1 1.7 13 1-13 1-13 (126)
151 PF13605 DUF4141: Domain of un 29.0 35 0.00075 22.9 1.3 14 25-38 21-34 (55)
152 PRK10780 periplasmic chaperone 28.9 41 0.00088 28.0 2.1 15 1-15 1-15 (165)
153 COG3054 Predicted transcriptio 28.1 40 0.00087 27.7 1.8 14 62-75 88-101 (184)
154 PF12276 DUF3617: Protein of u 27.8 46 0.001 27.4 2.2 15 1-15 1-15 (162)
155 PF12393 Dr_adhesin: Dr family 27.6 78 0.0017 16.7 2.2 16 1-16 1-16 (21)
156 PRK13301 putative L-aspartate 27.5 77 0.0017 28.8 3.7 38 23-67 86-123 (267)
157 TIGR03656 IsdC heme uptake pro 27.4 1.7E+02 0.0036 25.7 5.5 26 39-70 45-70 (217)
158 smart00722 CASH Domain present 27.2 2.9E+02 0.0064 21.3 9.0 59 151-211 44-111 (146)
159 PF10162 G8: G8 domain; Inter 26.2 2E+02 0.0042 22.7 5.5 54 57-123 11-65 (125)
160 COG2247 LytB Putative cell wal 26.1 80 0.0017 29.4 3.5 29 35-69 35-64 (337)
161 COG4588 AcfC Accessory coloniz 25.3 1.9E+02 0.0042 25.2 5.4 55 1-66 1-55 (252)
162 PRK15209 long polar fimbrial p 24.9 66 0.0014 26.9 2.7 12 1-12 1-12 (174)
163 PRK13912 nuclease NucT; Provis 24.0 1.5E+02 0.0033 24.8 4.8 57 1-72 2-58 (177)
164 TIGR01626 ytfJ_HI0045 conserve 24.0 68 0.0015 27.4 2.6 9 24-32 30-38 (184)
165 PF02373 JmjC: JmjC domain, hy 23.9 54 0.0012 24.8 1.8 15 56-70 86-100 (114)
166 PF08194 DIM: DIM protein; In 23.5 1.4E+02 0.003 18.2 3.0 6 1-6 1-6 (36)
167 PF10614 CsgF: Type VIII secre 23.5 68 0.0015 26.1 2.3 13 63-75 99-111 (142)
168 PRK10833 putative assembly pro 23.4 79 0.0017 32.4 3.4 49 1-63 1-49 (617)
169 COG4939 Major membrane immunog 23.0 2.7E+02 0.0059 22.2 5.4 32 61-93 27-61 (147)
170 COG5455 Predicted integral mem 22.6 67 0.0015 25.5 2.0 19 1-19 1-19 (129)
171 PF10913 DUF2706: Protein of u 22.3 95 0.0021 20.4 2.3 7 1-7 1-7 (60)
172 PF14060 DUF4252: Domain of un 22.1 1.4E+02 0.003 24.2 4.0 15 2-16 1-15 (155)
173 COG1030 NfeD Membrane-bound se 21.9 2.2E+02 0.0047 27.8 5.7 27 23-52 26-52 (436)
174 PF12099 DUF3575: Protein of u 21.8 91 0.002 26.7 2.9 16 1-16 1-16 (189)
175 PRK15346 outer membrane secret 20.9 1.2E+02 0.0025 30.4 3.9 22 1-22 1-23 (499)
176 PRK15324 type III secretion sy 20.8 1.6E+02 0.0035 26.5 4.4 32 38-69 28-66 (252)
177 PF10855 DUF2648: Protein of u 20.5 50 0.0011 19.4 0.7 13 1-13 1-13 (33)
178 PRK09934 fimbrial-like adhesin 20.2 87 0.0019 26.1 2.5 15 1-15 1-15 (171)
179 cd08667 APC10-ZZEF1 APC10/DOC1 20.0 2.1E+02 0.0046 22.9 4.5 37 121-162 19-55 (131)
No 1
>PLN02155 polygalacturonase
Probab=100.00 E-value=6.6e-73 Score=532.34 Aligned_cols=337 Identities=54% Similarity=1.019 Sum_probs=300.3
Q ss_pred CchhhHHHHHHH-HHhh-hccccCCceEEEeecCccCCCCcchHHHHHHHHHHhhhcCCCcEEEEcCcEEEEEeEEecCC
Q 047322 1 MAKLAVSCTLFI-FFIN-TLFQSASAAYNVINFGAKPDGKSDATQAFLRAWSSACYSNSPATLHVPRGLFLVKSISFNGP 78 (343)
Q Consensus 1 m~~~~~~~~~~~-~~~~-~~~~~~~~~~~v~d~GA~gdg~tDdt~Aiq~Ai~~a~~~~~g~~V~ip~G~Y~~~~l~l~~~ 78 (343)
|.|..+.+.|++ +|.. ..+..++.+|||+||||+|||.+|||+|||+||++||++.+|++|+||+|+|++++|.|.||
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~nv~~yGA~gDG~td~t~Ai~~Ai~~aC~~~gGg~v~vP~G~yl~g~i~l~gp 80 (394)
T PLN02155 1 MTKSAITFPLLFTLLTFIDVSSSASNVFNVVSFGAKPDGVTDSTAAFLKAWQGACGSASSATVVVPTGTFLLKVITFGGP 80 (394)
T ss_pred CccceeehhHHHHHHHHhhccccCCcEEEhhhcCcCCCCccccHHHHHHHHHHHcccCCCeEEEECCCcEEEEEEEEccc
Confidence 677654333322 2222 22233367999999999999999999999999987899889999999999999999999999
Q ss_pred CcccEEEEEeeEEEecCCcCCcCCCcceEEEEeeeeEEEEcceEeCCCCccccccCCCCCCCCCceEEEEEecCcEEEEe
Q 047322 79 CRHRIVFQIDGTIIAPSSYWSLGNSGFWILFYKVNRLSIHGGTIDATGAGYWACRKSGKSCPPPTRSISFVGASNIVVSG 158 (343)
Q Consensus 79 ~ks~~~l~~~g~l~~~~~~~~~~~~~~~i~~~~~~ni~I~GG~idg~g~~~w~~~~~~~~~~~~~~~i~~~~~~nv~i~~ 158 (343)
|||+++|+++|+|+++.++..|.....|+.+.+.+++.|.||+|||+|+.||.....+..++.+|+++.|.+|++++|++
T Consensus 81 cksnv~l~l~G~l~~~~d~~~~~~~~~wi~~~~~~~i~i~GG~iDGqG~~ww~~~~~~~~~~~~p~~i~~~~~~nv~i~g 160 (394)
T PLN02155 81 CKSKITFQVAGTVVAPEDYRTFGNSGYWILFNKVNRFSLVGGTFDARANGFWSCRKSGQNCPPGVRSISFNSAKDVIISG 160 (394)
T ss_pred CCCCceEEEeeEEECccccccccccceeEEEECcCCCEEEccEEecCceeEEEcccCCCCCCCcccceeEEEeeeEEEEC
Confidence 99999999999999988887776556799999999999999999999999998765544556678899999999999999
Q ss_pred eEEecCCccEEEEeceecEEEEeEEEECCCCCCCCCeeeeeCcccEEEEccEEecCCceEEeCCCceeEEEEeeEEcCCc
Q 047322 159 LTSINSRFFHIAIDECVNIMLRKLKINAPSWSPNTDGIHIQSSSGITISNSAIMTGDDCISVGPGTKNLWIERIACGPGH 238 (343)
Q Consensus 159 v~i~n~~~~~i~~~~~~~v~i~~~~i~~~~~~~~~DGi~~~~s~nv~I~n~~i~~~dD~i~i~~~~~ni~i~n~~~~~~~ 238 (343)
++++|+|.|++++..|++|+|++++|.++.+++|+|||++.+|+||+|+||+|.++||||+++++++||+|+||+|..+|
T Consensus 161 itl~nSp~w~i~~~~~~nv~i~~v~I~~p~~~~NtDGidi~~s~nV~I~~~~I~~gDDcIaik~gs~nI~I~n~~c~~Gh 240 (394)
T PLN02155 161 VKSMNSQVSHMTLNGCTNVVVRNVKLVAPGNSPNTDGFHVQFSTGVTFTGSTVQTGDDCVAIGPGTRNFLITKLACGPGH 240 (394)
T ss_pred eEEEcCCCeEEEEECeeeEEEEEEEEECCCCCCCCCccccccceeEEEEeeEEecCCceEEcCCCCceEEEEEEEEECCc
Confidence 99999999999999999999999999999888999999999999999999999999999999999999999999999999
Q ss_pred eEEEeecccCcCcccccCcEEEEEEEceEEeCCceEEEEEeecCCCCceEEeEEEEeEEEecCCeeEEEEeeeCCCCC-C
Q 047322 239 GIRMKKALAALGPMLLKMVLKNVTVTDSIFTGTQNGVRIKTWARPSNGFARNIRFRNIIMTKVFNPIIIDQNYCPDNH-C 317 (343)
Q Consensus 239 gi~i~~~~gs~g~~~~~~~~~ni~i~n~~~~~~~~gi~i~~~~~~~~g~i~nI~~~ni~~~~~~~~i~i~~~~~~~~~-~ 317 (343)
|++| ||+|++.+.+.++||+|+||+|.++.+|++||+|.+.++|.|+||+|+||+|+++++||.|++.|++... |
T Consensus 241 GisI----GS~g~~~~~~~V~nV~v~n~~~~~t~~GirIKT~~~~~gG~v~nI~f~ni~m~~v~~pI~i~q~Y~~~~~~~ 316 (394)
T PLN02155 241 GVSI----GSLAKELNEDGVENVTVSSSVFTGSQNGVRIKSWARPSTGFVRNVFFQDLVMKNVENPIIIDQNYCPTHEGC 316 (394)
T ss_pred eEEe----ccccccCCCCcEEEEEEEeeEEeCCCcEEEEEEecCCCCEEEEEEEEEeEEEcCccccEEEEecccCCCCCC
Confidence 9999 9999876577899999999999999999999998654689999999999999999999999999987544 7
Q ss_pred CCCCCceEEEeEEEEeEEEEecCC
Q 047322 318 PHQTSGVTISGVTYRNIKGTSATP 341 (343)
Q Consensus 318 ~~~~~~~~i~~I~~~ni~~~~~~~ 341 (343)
+.+.+.+.|+||+|+||++|.++.
T Consensus 317 ~~~~s~v~i~~It~~ni~gt~~~~ 340 (394)
T PLN02155 317 PNEYSGVKISQVTYKNIQGTSATQ 340 (394)
T ss_pred cCCCCCeEEEEEEEEeeEEEecCC
Confidence 655667899999999999998754
No 2
>PLN02218 polygalacturonase ADPG
Probab=100.00 E-value=2.4e-71 Score=527.40 Aligned_cols=320 Identities=43% Similarity=0.749 Sum_probs=294.3
Q ss_pred ccccCCceEEEeecCccCCCCcchHHHHHHHHHHhhhcCCCcEEEEcCc-EEEEEeEEecCCCcccEEEEEeeEEEecCC
Q 047322 18 LFQSASAAYNVINFGAKPDGKSDATQAFLRAWSSACYSNSPATLHVPRG-LFLVKSISFNGPCRHRIVFQIDGTIIAPSS 96 (343)
Q Consensus 18 ~~~~~~~~~~v~d~GA~gdg~tDdt~Aiq~Ai~~a~~~~~g~~V~ip~G-~Y~~~~l~l~~~~ks~~~l~~~g~l~~~~~ 96 (343)
.+++++++++|+||||+|||.+|||+|||+||++||++.++++|+||+| +|+++++.|.|+||++++|+++|+|+++.+
T Consensus 60 ~~~~~~~~~nv~dfGA~gDG~tddT~Af~~Ai~~aCs~~Ggg~v~vP~G~tyl~~~i~l~gp~ks~~~l~l~g~L~~s~d 139 (431)
T PLN02218 60 ASLRTPTTVSVSDFGAKGDGKTDDTQAFVNAWKKACSSNGAVNLLVPKGNTYLLKSIQLTGPCKSIRTVQIFGTLSASQK 139 (431)
T ss_pred cccCCCcEEEeeecccCCCCCcccHHHHHHHHHHhhhcCCCcEEEECCCCeEEEeeeEecCccCCceEEEEEEEEEeCCC
Confidence 4444577999999999999999999999999988899888899999999 699999999999999999999999999999
Q ss_pred cCCcCCCcceEEEEeeeeEEEEc---ceEeCCCCccccccC---CCCCCCCCceEEEEEecCcEEEEeeEEecCCccEEE
Q 047322 97 YWSLGNSGFWILFYKVNRLSIHG---GTIDATGAGYWACRK---SGKSCPPPTRSISFVGASNIVVSGLTSINSRFFHIA 170 (343)
Q Consensus 97 ~~~~~~~~~~i~~~~~~ni~I~G---G~idg~g~~~w~~~~---~~~~~~~~~~~i~~~~~~nv~i~~v~i~n~~~~~i~ 170 (343)
+.+|+....|+.+.+.+||+|+| |+|||+|+.||.... ...++..||+++.|.+|+|++|++++++|+|.|+++
T Consensus 140 ~~~y~~~~~wi~~~~~~ni~I~G~~~GtIDG~G~~WW~~~~~~~~~~~~~~rP~~i~f~~~~nv~I~gitl~nSp~w~i~ 219 (431)
T PLN02218 140 RSDYKDISKWIMFDGVNNLSVDGGSTGVVDGNGETWWQNSCKRNKAKPCTKAPTALTFYNSKSLIVKNLRVRNAQQIQIS 219 (431)
T ss_pred hhhccccccCEEEecCcEEEEECCCCcEEeCCchhhhhcccccCCcCccCcCCEEEEEEccccEEEeCeEEEcCCCEEEE
Confidence 98887777899999999999999 999999999997422 112345689999999999999999999999999999
Q ss_pred EeceecEEEEeEEEECCCCCCCCCeeeeeCcccEEEEccEEecCCceEEeCCCceeEEEEeeEEcCCceEEEeecccCcC
Q 047322 171 IDECVNIMLRKLKINAPSWSPNTDGIHIQSSSGITISNSAIMTGDDCISVGPGTKNLWIERIACGPGHGIRMKKALAALG 250 (343)
Q Consensus 171 ~~~~~~v~i~~~~i~~~~~~~~~DGi~~~~s~nv~I~n~~i~~~dD~i~i~~~~~ni~i~n~~~~~~~gi~i~~~~gs~g 250 (343)
+..|++|+|++++|.++.+++|+||||+.+|+||+|+||+|.++||||++|++++||+|+||+|..+||++| ||+|
T Consensus 220 ~~~~~nV~i~~v~I~a~~~spNTDGIdi~ss~nV~I~n~~I~tGDDcIaIksgs~nI~I~n~~c~~GHGisI----GS~g 295 (431)
T PLN02218 220 IEKCSNVQVSNVVVTAPADSPNTDGIHITNTQNIRVSNSIIGTGDDCISIESGSQNVQINDITCGPGHGISI----GSLG 295 (431)
T ss_pred EEceeeEEEEEEEEeCCCCCCCCCcEeecccceEEEEccEEecCCceEEecCCCceEEEEeEEEECCCCEEE----CcCC
Confidence 999999999999999998889999999999999999999999999999999999999999999999999999 9998
Q ss_pred cccccCcEEEEEEEceEEeCCceEEEEEeecCCCCceEEeEEEEeEEEecCCeeEEEEeeeCCCCCCCCCCCceEEEeEE
Q 047322 251 PMLLKMVLKNVTVTDSIFTGTQNGVRIKTWARPSNGFARNIRFRNIIMTKVFNPIIIDQNYCPDNHCPHQTSGVTISGVT 330 (343)
Q Consensus 251 ~~~~~~~~~ni~i~n~~~~~~~~gi~i~~~~~~~~g~i~nI~~~ni~~~~~~~~i~i~~~~~~~~~~~~~~~~~~i~~I~ 330 (343)
.......++||+|+|++|.++.+|+|||++++ ++|.++||+|+||+|+++++||.|++.|++...|+.++..+.|+||+
T Consensus 296 ~~~~~~~V~nV~v~n~~~~~t~nGvRIKT~~G-g~G~v~nI~f~ni~m~~V~~pI~Idq~Y~~~~~~~~~~s~v~I~nI~ 374 (431)
T PLN02218 296 DDNSKAFVSGVTVDGAKLSGTDNGVRIKTYQG-GSGTASNIIFQNIQMENVKNPIIIDQDYCDKSKCTSQQSAVQVKNVV 374 (431)
T ss_pred CCCCCceEEEEEEEccEEecCCcceEEeecCC-CCeEEEEEEEEeEEEEcccccEEEEeeccCCCCCCCCCCCeEEEEEE
Confidence 76556789999999999999999999999977 68999999999999999999999999998766677666778999999
Q ss_pred EEeEEEEecCCC
Q 047322 331 YRNIKGTSATPV 342 (343)
Q Consensus 331 ~~ni~~~~~~~~ 342 (343)
|+||+++..+.+
T Consensus 375 ~~NI~gtsa~~~ 386 (431)
T PLN02218 375 YRNISGTSASDV 386 (431)
T ss_pred EEeEEEEecCCc
Confidence 999999987543
No 3
>PLN02793 Probable polygalacturonase
Probab=100.00 E-value=9e-70 Score=518.86 Aligned_cols=313 Identities=42% Similarity=0.747 Sum_probs=288.0
Q ss_pred CceEEEeecCccCCCCcchHHHHHHHHHHhhhcCCCcEEEEcCc-EEEEEeEEecCCCcccEEEEEeeEEEecCCcCCcC
Q 047322 23 SAAYNVINFGAKPDGKSDATQAFLRAWSSACYSNSPATLHVPRG-LFLVKSISFNGPCRHRIVFQIDGTIIAPSSYWSLG 101 (343)
Q Consensus 23 ~~~~~v~d~GA~gdg~tDdt~Aiq~Ai~~a~~~~~g~~V~ip~G-~Y~~~~l~l~~~~ks~~~l~~~g~l~~~~~~~~~~ 101 (343)
+++++|+||||+|||.+|||+|||+||++||++.+|++|+||+| +|+++++.|.|+|||+++|+++|+|+++.++.+|+
T Consensus 50 ~~~~~V~dfGA~gDG~tddT~Aiq~Ai~~aC~~~ggg~v~vP~G~~fl~~~i~l~gpcks~vtL~l~g~l~~~~d~~~w~ 129 (443)
T PLN02793 50 ERVLHVGDFGAKGDGVTDDTQAFKEAWKMACSSKVKTRIVIPAGYTFLVRPIDLGGPCKAKLTLQISGTIIAPKDPDVWK 129 (443)
T ss_pred ceEEEhhhcccCCCCCCccHHHHHHHHHHHhccCCCCEEEECCCceEEEEEEEECCccCCCeEEEEEEEEEccCChHHcc
Confidence 46899999999999999999999999987899888999999999 59999999999999999999999999999988887
Q ss_pred CC--cceEEEEeeeeEEEEc-ceEeCCCCccccccC---CCCCCCCCceEEEEEecCcEEEEeeEEecCCccEEEEecee
Q 047322 102 NS--GFWILFYKVNRLSIHG-GTIDATGAGYWACRK---SGKSCPPPTRSISFVGASNIVVSGLTSINSRFFHIAIDECV 175 (343)
Q Consensus 102 ~~--~~~i~~~~~~ni~I~G-G~idg~g~~~w~~~~---~~~~~~~~~~~i~~~~~~nv~i~~v~i~n~~~~~i~~~~~~ 175 (343)
.. ..|+.+.+.+|++|+| |+|||+|+.||+... ....+..||+++.|.+|+|++|++++++|+|.|++++..|+
T Consensus 130 ~~~~~~~i~~~~~~ni~ItG~G~IDG~G~~ww~~~~~~~~~~~~~~rP~~i~f~~~~nv~v~gitl~nSp~~~i~~~~~~ 209 (443)
T PLN02793 130 GLNPRKWLYFHGVNHLTVEGGGTVNGMGHEWWAQSCKINHTNPCRHAPTAITFHKCKDLRVENLNVIDSQQMHIAFTNCR 209 (443)
T ss_pred CCCCceEEEEecCceEEEEeceEEECCCcccccccccccCCCCccCCceEEEEEeeccEEEECeEEEcCCCeEEEEEccC
Confidence 43 5799999999999999 999999999997421 11234568999999999999999999999999999999999
Q ss_pred cEEEEeEEEECCCCCCCCCeeeeeCcccEEEEccEEecCCceEEeCCCceeEEEEeeEEcCCceEEEeecccCcCccccc
Q 047322 176 NIMLRKLKINAPSWSPNTDGIHIQSSSGITISNSAIMTGDDCISVGPGTKNLWIERIACGPGHGIRMKKALAALGPMLLK 255 (343)
Q Consensus 176 ~v~i~~~~i~~~~~~~~~DGi~~~~s~nv~I~n~~i~~~dD~i~i~~~~~ni~i~n~~~~~~~gi~i~~~~gs~g~~~~~ 255 (343)
+|+|++++|.++..++|+||||+.+|+||+|+||+|.++||||+++++++||+|+||+|..+||++| ||+|+....
T Consensus 210 nv~i~~l~I~~p~~spNTDGIdi~~s~nV~I~n~~I~~gDDcIaik~~s~nI~I~n~~c~~GhGisI----GSlg~~~~~ 285 (443)
T PLN02793 210 RVTISGLKVIAPATSPNTDGIHISASRGVVIKDSIVRTGDDCISIVGNSSRIKIRNIACGPGHGISI----GSLGKSNSW 285 (443)
T ss_pred cEEEEEEEEECCCCCCCCCcEeeeccceEEEEeCEEeCCCCeEEecCCcCCEEEEEeEEeCCccEEE----ecccCcCCC
Confidence 9999999999998889999999999999999999999999999999999999999999999999999 999886556
Q ss_pred CcEEEEEEEceEEeCCceEEEEEeecCCCCceEEeEEEEeEEEecCCeeEEEEeeeCCCC-CCCCCCCceEEEeEEEEeE
Q 047322 256 MVLKNVTVTDSIFTGTQNGVRIKTWARPSNGFARNIRFRNIIMTKVFNPIIIDQNYCPDN-HCPHQTSGVTISGVTYRNI 334 (343)
Q Consensus 256 ~~~~ni~i~n~~~~~~~~gi~i~~~~~~~~g~i~nI~~~ni~~~~~~~~i~i~~~~~~~~-~~~~~~~~~~i~~I~~~ni 334 (343)
..++||+|+||+|.++.+|++||++.+ ++|.++||+|+||+|+++.+||.|++.|++.. .|+++.+.+.|+||+|+||
T Consensus 286 ~~V~nV~v~n~~~~~t~~GirIKt~~g-~~G~v~nItf~ni~m~nv~~pI~I~q~Y~~~~~~~~~~ts~v~I~nI~~~nI 364 (443)
T PLN02793 286 SEVRDITVDGAFLSNTDNGVRIKTWQG-GSGNASKITFQNIFMENVSNPIIIDQYYCDSRKPCANQTSAVKVENISFVHI 364 (443)
T ss_pred CcEEEEEEEccEEeCCCceEEEEEeCC-CCEEEEEEEEEeEEEecCCceEEEEeeecCCCCCCCCCCCCeEEEeEEEEEE
Confidence 789999999999999999999999977 67999999999999999999999999997643 4766667789999999999
Q ss_pred EEEecC
Q 047322 335 KGTSAT 340 (343)
Q Consensus 335 ~~~~~~ 340 (343)
++|...
T Consensus 365 ~Gt~~~ 370 (443)
T PLN02793 365 KGTSAT 370 (443)
T ss_pred EEEEcc
Confidence 999864
No 4
>PLN03003 Probable polygalacturonase At3g15720
Probab=100.00 E-value=5.3e-69 Score=509.49 Aligned_cols=328 Identities=39% Similarity=0.706 Sum_probs=290.3
Q ss_pred CchhhHHHHHHHHHhhhccccCCceEEEeecCccCCCCcchHHHHHHHHHHhhhcCCCcEEEEcCc-EEEEEeEEecCCC
Q 047322 1 MAKLAVSCTLFIFFINTLFQSASAAYNVINFGAKPDGKSDATQAFLRAWSSACYSNSPATLHVPRG-LFLVKSISFNGPC 79 (343)
Q Consensus 1 m~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~GA~gdg~tDdt~Aiq~Ai~~a~~~~~g~~V~ip~G-~Y~~~~l~l~~~~ 79 (343)
|||.-++|-+.+++.....++. ++||+||||+|||.+|||+|||+||++||++.++++|+||+| +|+++++.|.++|
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~--~fnV~~yGA~gDG~tDdT~Af~~Aw~aaC~~~ggg~v~VP~G~~yl~~pl~l~gpc 78 (456)
T PLN03003 1 MKKKTWFLNFSLFFLQIFTSSN--ALDVTQFGAVGDGVTDDSQAFLKAWEAVCSGTGDGQFVVPAGMTFMLQPLKFQGSC 78 (456)
T ss_pred CCceeEEEeeeeeeeeeeeeee--EEehhhcCCCCCCCcccHHHHHHHHHHhhhccCCCEEEECCCceEEeeeeEeCCCc
Confidence 7776655555444444344444 899999999999999999999999998898888999999999 5999999999999
Q ss_pred ccc-EEEEEeeEEEecCCcCCcCC-CcceEEEEeeeeEEEEc-ceEeCCCCccccccCCCCCCCCCceEEEEEecCcEEE
Q 047322 80 RHR-IVFQIDGTIIAPSSYWSLGN-SGFWILFYKVNRLSIHG-GTIDATGAGYWACRKSGKSCPPPTRSISFVGASNIVV 156 (343)
Q Consensus 80 ks~-~~l~~~g~l~~~~~~~~~~~-~~~~i~~~~~~ni~I~G-G~idg~g~~~w~~~~~~~~~~~~~~~i~~~~~~nv~i 156 (343)
|+. +++.++|+++++.. ..|.. ...||.+.+.++++|.| |+|||+|+.||+.. ..||+++.|.+|+|++|
T Consensus 79 k~~~~~~~i~G~i~ap~~-~~w~~~~~~wI~f~~~~~i~I~G~GtIDGqG~~wW~~~------~~rP~~l~f~~~~nv~I 151 (456)
T PLN03003 79 KSTPVFVQMLGKLVAPSK-GNWKGDKDQWILFTDIEGLVIEGDGEINGQGSSWWEHK------GSRPTALKFRSCNNLRL 151 (456)
T ss_pred cCcceeeccCceEecCcc-ccccCCCcceEEEEcccceEEeccceEeCCchhhhhcc------cCCceEEEEEecCCcEE
Confidence 874 88888899998654 34543 35799999999999999 99999999999743 35899999999999999
Q ss_pred EeeEEecCCccEEEEeceecEEEEeEEEECCCCCCCCCeeeeeCcccEEEEccEEecCCceEEeCCCceeEEEEeeEEcC
Q 047322 157 SGLTSINSRFFHIAIDECVNIMLRKLKINAPSWSPNTDGIHIQSSSGITISNSAIMTGDDCISVGPGTKNLWIERIACGP 236 (343)
Q Consensus 157 ~~v~i~n~~~~~i~~~~~~~v~i~~~~i~~~~~~~~~DGi~~~~s~nv~I~n~~i~~~dD~i~i~~~~~ni~i~n~~~~~ 236 (343)
++++++|+|.|++++..|++|++++++|.+|..++|+||||+.+|+||+|+||+|.++||||+++++++||+|+||+|.+
T Consensus 152 ~gitl~NSp~w~i~i~~c~nV~i~~l~I~ap~~spNTDGIDi~~S~nV~I~n~~I~tGDDCIaiksgs~NI~I~n~~c~~ 231 (456)
T PLN03003 152 SGLTHLDSPMAHIHISECNYVTISSLRINAPESSPNTDGIDVGASSNVVIQDCIIATGDDCIAINSGTSNIHISGIDCGP 231 (456)
T ss_pred eCeEEecCCcEEEEEeccccEEEEEEEEeCCCCCCCCCcEeecCcceEEEEecEEecCCCeEEeCCCCccEEEEeeEEEC
Confidence 99999999999999999999999999999998889999999999999999999999999999999999999999999999
Q ss_pred CceEEEeecccCcCcccccCcEEEEEEEceEEeCCceEEEEEeecCCCCceEEeEEEEeEEEecCCeeEEEEeeeCCCCC
Q 047322 237 GHGIRMKKALAALGPMLLKMVLKNVTVTDSIFTGTQNGVRIKTWARPSNGFARNIRFRNIIMTKVFNPIIIDQNYCPDNH 316 (343)
Q Consensus 237 ~~gi~i~~~~gs~g~~~~~~~~~ni~i~n~~~~~~~~gi~i~~~~~~~~g~i~nI~~~ni~~~~~~~~i~i~~~~~~~~~ 316 (343)
+||++| ||+|.......++||+|+||+|.++.+|++||++.+ ++|.++||+|+||+|+++++||.|++.|++...
T Consensus 232 GHGISI----GSlg~~g~~~~V~NV~v~n~~~~~T~nGvRIKT~~G-g~G~v~nItf~nI~m~nV~~pI~Idq~Y~~~~~ 306 (456)
T PLN03003 232 GHGISI----GSLGKDGETATVENVCVQNCNFRGTMNGARIKTWQG-GSGYARMITFNGITLDNVENPIIIDQFYNGGDS 306 (456)
T ss_pred CCCeEE----eeccCCCCcceEEEEEEEeeEEECCCcEEEEEEeCC-CCeEEEEEEEEeEEecCccceEEEEcccCCCCC
Confidence 999999 999876545679999999999999999999999977 579999999999999999999999999985432
Q ss_pred ---CCCCCCceEEEeEEEEeEEEEecCCC
Q 047322 317 ---CPHQTSGVTISGVTYRNIKGTSATPV 342 (343)
Q Consensus 317 ---~~~~~~~~~i~~I~~~ni~~~~~~~~ 342 (343)
|..+.+.+.|+||+|+||+||..+..
T Consensus 307 ~~~~~~~~s~v~IsnI~f~NI~GTs~~~~ 335 (456)
T PLN03003 307 DNAKDRKSSAVEVSKVVFSNFIGTSKSEY 335 (456)
T ss_pred CCcccCCCCCcEEEeEEEEeEEEEeCccc
Confidence 44455678999999999999987654
No 5
>PLN02188 polygalacturonase/glycoside hydrolase family protein
Probab=100.00 E-value=8.3e-68 Score=499.94 Aligned_cols=313 Identities=46% Similarity=0.804 Sum_probs=282.3
Q ss_pred CceEEEeecCccCCCCcchHHHHHHHHHHhhhcCCCcEEEEcCcEEEEEeEEecCCCcccEEEEEeeEEEecCCcCCcCC
Q 047322 23 SAAYNVINFGAKPDGKSDATQAFLRAWSSACYSNSPATLHVPRGLFLVKSISFNGPCRHRIVFQIDGTIIAPSSYWSLGN 102 (343)
Q Consensus 23 ~~~~~v~d~GA~gdg~tDdt~Aiq~Ai~~a~~~~~g~~V~ip~G~Y~~~~l~l~~~~ks~~~l~~~g~l~~~~~~~~~~~ 102 (343)
+.++||+||||+|||.+|||+|||+||++||++.+|++|+||+|+|+++++.|.|+|++...|.+ +|+++.++.+|+.
T Consensus 34 ~~~~nv~d~GA~gDg~tddT~Ai~~Ai~~aC~~~Ggg~V~vP~G~yl~g~i~lkgpc~~~s~v~l--~L~~s~d~~~y~~ 111 (404)
T PLN02188 34 TFLFDVRSFGARANGHTDDSKAFMAAWKAACASTGAVTLLIPPGTYYIGPVQFHGPCTNVSSLTF--TLKAATDLSRYGS 111 (404)
T ss_pred ceEEehhhcCcCCCCCeeCHHHHHHHHHHHhccCCCeEEEECCCeEEEEeEEeCCCcCcceeEEE--EEEcCCCHHHCCC
Confidence 56899999999999999999999999988898888999999999999999999999875444444 8899999999987
Q ss_pred CcceEEEEeeeeEEEEc-ceEeCCCCccccccC--CCCCCCCCceEEEEEecCcEEEEeeEEecCCccEEEEeceecEEE
Q 047322 103 SGFWILFYKVNRLSIHG-GTIDATGAGYWACRK--SGKSCPPPTRSISFVGASNIVVSGLTSINSRFFHIAIDECVNIML 179 (343)
Q Consensus 103 ~~~~i~~~~~~ni~I~G-G~idg~g~~~w~~~~--~~~~~~~~~~~i~~~~~~nv~i~~v~i~n~~~~~i~~~~~~~v~i 179 (343)
...|+.+...+||+|+| |+|||+|+.||+... ....+..||+++.|.+|+|+.|++++++|+|.|++++..|++|++
T Consensus 112 ~~~~i~~~~~~ni~I~G~G~IDG~G~~ww~~~~~~~~~~~~~rP~~i~f~~~~nv~i~gitl~nSp~w~i~~~~~~~v~i 191 (404)
T PLN02188 112 GNDWIEFGWVNGLTLTGGGTFDGQGAAAWPFNKCPIRKDCKLLPTSVKFVNMNNTVVRGITSVNSKFFHIALVECRNFKG 191 (404)
T ss_pred ccceEEEeceeeEEEEeeEEEeCCCcccccccccccCCCCCcCceEEEEEeeeeEEEeCeEEEcCCCeEEEEEccccEEE
Confidence 67799998899999999 999999999997432 113456789999999999999999999999999999999999999
Q ss_pred EeEEEECCCCCCCCCeeeeeCcccEEEEccEEecCCceEEeCCCceeEEEEeeEEcCCceEEEeecccCcCcccccCcEE
Q 047322 180 RKLKINAPSWSPNTDGIHIQSSSGITISNSAIMTGDDCISVGPGTKNLWIERIACGPGHGIRMKKALAALGPMLLKMVLK 259 (343)
Q Consensus 180 ~~~~i~~~~~~~~~DGi~~~~s~nv~I~n~~i~~~dD~i~i~~~~~ni~i~n~~~~~~~gi~i~~~~gs~g~~~~~~~~~ 259 (343)
++++|.++.+++|+|||++.+|+||+|+||+|.++||||+++++++||+|+|+.|..+||++| ||+|++...+.++
T Consensus 192 ~~v~I~~~~~spNtDGidi~~s~nV~I~n~~I~~GDDcIaiksg~~nI~I~n~~c~~ghGisi----GSlG~~~~~~~V~ 267 (404)
T PLN02188 192 SGLKISAPSDSPNTDGIHIERSSGVYISDSRIGTGDDCISIGQGNSQVTITRIRCGPGHGISV----GSLGRYPNEGDVT 267 (404)
T ss_pred EEEEEeCCCCCCCCCcEeeeCcccEEEEeeEEeCCCcEEEEccCCccEEEEEEEEcCCCcEEe----CCCCCCCcCCcEE
Confidence 999999998889999999999999999999999999999999999999999999999999999 9999865567899
Q ss_pred EEEEEceEEeCCceEEEEEeecCC-CCceEEeEEEEeEEEecCCeeEEEEeeeCCCCCCC-CCCCceEEEeEEEEeEEEE
Q 047322 260 NVTVTDSIFTGTQNGVRIKTWARP-SNGFARNIRFRNIIMTKVFNPIIIDQNYCPDNHCP-HQTSGVTISGVTYRNIKGT 337 (343)
Q Consensus 260 ni~i~n~~~~~~~~gi~i~~~~~~-~~g~i~nI~~~ni~~~~~~~~i~i~~~~~~~~~~~-~~~~~~~i~~I~~~ni~~~ 337 (343)
||+|+||+|.++.+|++||++.+. ++|.++||+|+||+|+++.+||.|++.|++...|. .+...+.|+||+|+||+++
T Consensus 268 nV~v~n~~~~~t~~GiriKt~~g~~~~G~v~nI~f~ni~m~~v~~pI~i~~~Y~~~~~~~~~~~s~v~I~nIt~~nI~gt 347 (404)
T PLN02188 268 GLVVRDCTFTGTTNGIRIKTWANSPGKSAATNMTFENIVMNNVTNPIIIDQKYCPFYSCESKYPSGVTLSDIYFKNIRGT 347 (404)
T ss_pred EEEEEeeEEECCCcEEEEEEecCCCCceEEEEEEEEeEEecCccceEEEEccccCCCCCCcCCCCCcEEEeEEEEEEEEE
Confidence 999999999999999999999752 35899999999999999999999999998765553 2345689999999999999
Q ss_pred ecCC
Q 047322 338 SATP 341 (343)
Q Consensus 338 ~~~~ 341 (343)
..+.
T Consensus 348 ~~~~ 351 (404)
T PLN02188 348 SSSQ 351 (404)
T ss_pred ecCc
Confidence 8754
No 6
>PLN03010 polygalacturonase
Probab=100.00 E-value=4.3e-67 Score=493.89 Aligned_cols=303 Identities=43% Similarity=0.779 Sum_probs=278.3
Q ss_pred CCceEEEeecCccCCCCcchHHHHHHHHHHhhhcCC-CcEEEEcCc-EEEEEeEEecCCCc-ccEEEEEeeEEEecCCcC
Q 047322 22 ASAAYNVINFGAKPDGKSDATQAFLRAWSSACYSNS-PATLHVPRG-LFLVKSISFNGPCR-HRIVFQIDGTIIAPSSYW 98 (343)
Q Consensus 22 ~~~~~~v~d~GA~gdg~tDdt~Aiq~Ai~~a~~~~~-g~~V~ip~G-~Y~~~~l~l~~~~k-s~~~l~~~g~l~~~~~~~ 98 (343)
++.+|||+||||+|||.+|||+|||+||++||+..+ +++|+||+| +|+++++.|++||| ++++|+++|+|+++.++.
T Consensus 43 ~~~~~nV~dyGA~gDG~tddt~A~~~Ai~~ac~~~g~~g~v~vP~G~~yl~~~i~l~~pc~~~~v~l~l~G~l~~~~d~~ 122 (409)
T PLN03010 43 NGQNYNVLKFGAKGDGQTDDSNAFLQAWNATCGGEGNINTLLIPSGKTYLLQPIEFKGPCKSTSIKVQLDGIIVAPSNIV 122 (409)
T ss_pred CCcEEeeeecCcCCCCCcccHHHHHHHHHHHccCCCCceEEEECCCCeEEEEeEEecCCCCCCcEEEEEccEEEccCChh
Confidence 466999999999999999999999999987775432 379999999 79999999999887 579999999999999988
Q ss_pred CcCC--CcceEEEEeeeeEEEEc-ceEeCCCCccccccCCCCCCCCCceEEEEEecCcEEEEeeEEecCCccEEEEecee
Q 047322 99 SLGN--SGFWILFYKVNRLSIHG-GTIDATGAGYWACRKSGKSCPPPTRSISFVGASNIVVSGLTSINSRFFHIAIDECV 175 (343)
Q Consensus 99 ~~~~--~~~~i~~~~~~ni~I~G-G~idg~g~~~w~~~~~~~~~~~~~~~i~~~~~~nv~i~~v~i~n~~~~~i~~~~~~ 175 (343)
+|+. ...|+.+.+.+|++|.| |+|||+|+.||+ ++.|.+|+|++|++++++|+|.|++++..|+
T Consensus 123 ~w~~~~~~~wi~f~~v~nv~I~G~G~IDG~G~~ww~-------------~l~~~~~~nv~v~gitl~nsp~~~i~i~~~~ 189 (409)
T PLN03010 123 AWSNPKSQMWISFSTVSGLMIDGSGTIDGRGSSFWE-------------ALHISKCDNLTINGITSIDSPKNHISIKTCN 189 (409)
T ss_pred hccCCCCcceEEEecccccEEeeceEEeCCCccccc-------------eEEEEeecCeEEeeeEEEcCCceEEEEeccc
Confidence 8864 35689999999999999 999999999995 5899999999999999999999999999999
Q ss_pred cEEEEeEEEECCCCCCCCCeeeeeCcccEEEEccEEecCCceEEeCCCceeEEEEeeEEcCCceEEEeecccCcCccccc
Q 047322 176 NIMLRKLKINAPSWSPNTDGIHIQSSSGITISNSAIMTGDDCISVGPGTKNLWIERIACGPGHGIRMKKALAALGPMLLK 255 (343)
Q Consensus 176 ~v~i~~~~i~~~~~~~~~DGi~~~~s~nv~I~n~~i~~~dD~i~i~~~~~ni~i~n~~~~~~~gi~i~~~~gs~g~~~~~ 255 (343)
+|++++++|.++..++|+|||++..|++|+|+||++.++||||++|+++.++.|+++.|..+||++| ||+|.....
T Consensus 190 nv~i~~i~I~a~~~s~NTDGiDi~~s~nV~I~n~~I~~gDDcIaiksgs~ni~I~~~~C~~gHGisI----GS~g~~~~~ 265 (409)
T PLN03010 190 YVAISKINILAPETSPNTDGIDISYSTNINIFDSTIQTGDDCIAINSGSSNINITQINCGPGHGISV----GSLGADGAN 265 (409)
T ss_pred cEEEEEEEEeCCCCCCCCCceeeeccceEEEEeeEEecCCCeEEecCCCCcEEEEEEEeECcCCEEE----ccCCCCCCC
Confidence 9999999999988889999999999999999999999999999999999999999999999999999 999876555
Q ss_pred CcEEEEEEEceEEeCCceEEEEEeecCCCCceEEeEEEEeEEEecCCeeEEEEeeeCCCCC-CCCCCCceEEEeEEEEeE
Q 047322 256 MVLKNVTVTDSIFTGTQNGVRIKTWARPSNGFARNIRFRNIIMTKVFNPIIIDQNYCPDNH-CPHQTSGVTISGVTYRNI 334 (343)
Q Consensus 256 ~~~~ni~i~n~~~~~~~~gi~i~~~~~~~~g~i~nI~~~ni~~~~~~~~i~i~~~~~~~~~-~~~~~~~~~i~~I~~~ni 334 (343)
..++||+|+||+|.++.+|++||++.+ ++|.++||+|+||+|+++++||.|++.|++.+. |..+++.+.|+||+|+||
T Consensus 266 ~~V~nV~v~n~~i~~t~~GirIKt~~G-~~G~v~nItf~nI~m~~v~~pI~I~q~Y~~~~~~~~~~~s~v~Isdi~~~ni 344 (409)
T PLN03010 266 AKVSDVHVTHCTFNQTTNGARIKTWQG-GQGYARNISFENITLINTKNPIIIDQQYIDKGKLDATKDSAVAISNVKYVGF 344 (409)
T ss_pred CeeEEEEEEeeEEeCCCcceEEEEecC-CCEEEEEeEEEeEEEecCCccEEEEeeccCCCCCCCCCCCceEEEeEEEEee
Confidence 679999999999999999999999977 689999999999999999999999999987544 766778899999999999
Q ss_pred EEEecCCC
Q 047322 335 KGTSATPV 342 (343)
Q Consensus 335 ~~~~~~~~ 342 (343)
+||.++..
T Consensus 345 ~GT~~~~~ 352 (409)
T PLN03010 345 RGTTSNEN 352 (409)
T ss_pred EEEeCCCc
Confidence 99976543
No 7
>PF00295 Glyco_hydro_28: Glycosyl hydrolases family 28; InterPro: IPR000743 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 28 GH28 from CAZY comprises enzymes with several known activities; polygalacturonase (3.2.1.15 from EC); exo-polygalacturonase (3.2.1.67 from EC); exo-polygalacturonase (3.2.1.82 from EC); rhamnogalacturonase (EC not defined). Polygalacturonase (PG) (pectinase) [, ] catalyses the random hydrolysis of 1,4-alpha-D-galactosiduronic linkages in pectate and other galacturonans. In fruit, polygalacturonase plays an important role in cell wall metabolism during ripening. In plant bacterial pathogens such as Erwinia carotovora or Ralstonia solanacearum (Pseudomonas solanacearum) and fungal pathogens such as Aspergillus niger, polygalacturonase is involved in maceration and soft-rotting of plant tissue. Exo-poly-alpha-D-galacturonosidase (3.2.1.82 from EC) (exoPG) [] hydrolyses peptic acid from the non-reducing end, releasing digalacturonate. PG and exoPG share a few regions of sequence similarity, and belong to family 28 of the glycosyl hydrolases.; GO: 0004650 polygalacturonase activity, 0005975 carbohydrate metabolic process; PDB: 1KCC_A 1KCD_A 1K5C_A 1HG8_A 2IQ7_A 2UVF_B 1RMG_A 1CZF_B 3JUR_C 1BHE_A ....
Probab=100.00 E-value=2.2e-52 Score=389.18 Aligned_cols=282 Identities=38% Similarity=0.651 Sum_probs=244.8
Q ss_pred hhcCCCcEEEEcCcEEEEEeEEecCCCcccEEEEEeeEEEecCCcCCcCCCcceEEEEeeeeEEEEc-ceEeCCCCcccc
Q 047322 53 CYSNSPATLHVPRGLFLVKSISFNGPCRHRIVFQIDGTIIAPSSYWSLGNSGFWILFYKVNRLSIHG-GTIDATGAGYWA 131 (343)
Q Consensus 53 ~~~~~g~~V~ip~G~Y~~~~l~l~~~~ks~~~l~~~g~l~~~~~~~~~~~~~~~i~~~~~~ni~I~G-G~idg~g~~~w~ 131 (343)
|++.++++|+||+|+|+++++.|.+++++++++.++|++.++.....++. ..||.+.+++|++|+| |+|||+|+.||+
T Consensus 1 C~~~~~~~v~vP~g~~~~~~~~l~~~l~~~~~~~l~G~~~~~~~~~~~~~-~~~i~~~~~~ni~i~G~G~IDG~G~~w~~ 79 (326)
T PF00295_consen 1 CSSIGGGTVVVPAGTYLLGPLFLKSTLHSDVGLTLDGTINFSYDNWEGPN-SALIYAENAENITITGKGTIDGNGQAWWD 79 (326)
T ss_dssp HSEEEEESEEESTSTEEEEETSEETECETTCEEEEESEEEEG-EESTSE--SEEEEEESEEEEECTTSSEEE--GGGTCS
T ss_pred CcCCcCCEEEECCCCeEEceeEEEcccCCCeEEEEEEEEEeCCCcccCCc-cEEEEEEceEEEEecCCceEcCchhhhhc
Confidence 56667789999999999999988544457899999999998855555554 7889999999999999 999999999998
Q ss_pred ccCC-CCCCCCCceEEEEEecCcEEEEeeEEecCCccEEEEeceecEEEEeEEEECCCCCCCCCeeeeeCcccEEEEccE
Q 047322 132 CRKS-GKSCPPPTRSISFVGASNIVVSGLTSINSRFFHIAIDECVNIMLRKLKINAPSWSPNTDGIHIQSSSGITISNSA 210 (343)
Q Consensus 132 ~~~~-~~~~~~~~~~i~~~~~~nv~i~~v~i~n~~~~~i~~~~~~~v~i~~~~i~~~~~~~~~DGi~~~~s~nv~I~n~~ 210 (343)
.... ......||+++.|.+|++++|++++++|+|.|++++..|++|++++++|.++...+++|||++.+|+||+|+||+
T Consensus 80 ~~~~~~~~~~~rp~~i~~~~~~~~~i~~i~~~nsp~w~~~~~~~~nv~i~~i~I~~~~~~~NtDGid~~~s~nv~I~n~~ 159 (326)
T PF00295_consen 80 GSGDANNNGQRRPRLIRFNNCKNVTIEGITIRNSPFWHIHINDCDNVTISNITINNPANSPNTDGIDIDSSKNVTIENCF 159 (326)
T ss_dssp SCTTHCCSSSSSSESEEEEEEEEEEEESEEEES-SSESEEEESEEEEEEESEEEEEGGGCTS--SEEEESEEEEEEESEE
T ss_pred cccccccccccccceeeeeeecceEEEeeEecCCCeeEEEEEccCCeEEcceEEEecCCCCCcceEEEEeeeEEEEEEee
Confidence 5543 134567899999999999999999999999999999999999999999999877799999999999999999999
Q ss_pred EecCCceEEeCCCceeEEEEeeEEcCCceEEEeecccCcCcccccCcEEEEEEEceEEeCCceEEEEEeecCCCCceEEe
Q 047322 211 IMTGDDCISVGPGTKNLWIERIACGPGHGIRMKKALAALGPMLLKMVLKNVTVTDSIFTGTQNGVRIKTWARPSNGFARN 290 (343)
Q Consensus 211 i~~~dD~i~i~~~~~ni~i~n~~~~~~~gi~i~~~~gs~g~~~~~~~~~ni~i~n~~~~~~~~gi~i~~~~~~~~g~i~n 290 (343)
+.++||||++|+++.||+|+||+|..+||++| ||++.......++||+|+||+|.++.+|++||++++ ++|.|+|
T Consensus 160 i~~gDD~Iaiks~~~ni~v~n~~~~~ghGisi----GS~~~~~~~~~i~nV~~~n~~i~~t~~gi~iKt~~~-~~G~v~n 234 (326)
T PF00295_consen 160 IDNGDDCIAIKSGSGNILVENCTCSGGHGISI----GSEGSGGSQNDIRNVTFENCTIINTDNGIRIKTWPG-GGGYVSN 234 (326)
T ss_dssp EESSSESEEESSEECEEEEESEEEESSSEEEE----EEESSSSE--EEEEEEEEEEEEESESEEEEEEEETT-TSEEEEE
T ss_pred cccccCcccccccccceEEEeEEEecccccee----eeccCCccccEEEeEEEEEEEeeccceEEEEEEecc-cceEEec
Confidence 99999999999988899999999999999999 998755433469999999999999999999999976 6899999
Q ss_pred EEEEeEEEecCCeeEEEEeeeCCCCCCCCCCCceEEEeEEEEeEEEEecC
Q 047322 291 IRFRNIIMTKVFNPIIIDQNYCPDNHCPHQTSGVTISGVTYRNIKGTSAT 340 (343)
Q Consensus 291 I~~~ni~~~~~~~~i~i~~~~~~~~~~~~~~~~~~i~~I~~~ni~~~~~~ 340 (343)
|+|+||+++++.+||.|++.|.+...|+.++..+.|+||+|+||+++..+
T Consensus 235 I~f~ni~~~~v~~pi~i~~~y~~~~~~~~~~~~~~i~nI~~~nitg~~~~ 284 (326)
T PF00295_consen 235 ITFENITMENVKYPIFIDQDYRDGGPCGKPPSGVSISNITFRNITGTSAG 284 (326)
T ss_dssp EEEEEEEEEEESEEEEEEEEECTTEESSCSSSSSEEEEEEEEEEEEEEST
T ss_pred eEEEEEEecCCceEEEEEeccccccccCcccCCceEEEEEEEeeEEEecc
Confidence 99999999999999999999987544665556789999999999999876
No 8
>COG5434 PGU1 Endopygalactorunase [Cell envelope biogenesis, outer membrane]
Probab=100.00 E-value=1.1e-42 Score=334.08 Aligned_cols=269 Identities=29% Similarity=0.471 Sum_probs=229.7
Q ss_pred CceEEEeecCccCCCCcchHHHHHHHHHHhhhcCCCcEEEEcCcEEEEEeEEecCCCcccEEEEEe-e-EEEecCCcCCc
Q 047322 23 SAAYNVINFGAKPDGKSDATQAFLRAWSSACYSNSPATLHVPRGLFLVKSISFNGPCRHRIVFQID-G-TIIAPSSYWSL 100 (343)
Q Consensus 23 ~~~~~v~d~GA~gdg~tDdt~Aiq~Ai~~a~~~~~g~~V~ip~G~Y~~~~l~l~~~~ks~~~l~~~-g-~l~~~~~~~~~ 100 (343)
...++|.+|||+|||.+|+++|||+||+ +|+..+|++|+||+|+|+.++|+| ||+++|+++ | +|+.+.++.+|
T Consensus 80 ~t~~sv~~~ga~gDG~t~~~~aiq~AI~-~ca~a~Gg~V~lPaGtylsg~l~L----KS~~~L~l~egatl~~~~~p~~y 154 (542)
T COG5434 80 DTAFSVSDDGAVGDGATDNTAAIQAAID-ACASAGGGTVLLPAGTYLSGPLFL----KSNVTLHLAEGATLLASSNPKDY 154 (542)
T ss_pred cceeeeccccccccCCccCHHHHHHHHH-hhhhhcCceEEECCceeEeeeEEE----ecccEEEecCCceeeCCCChhhc
Confidence 5689999999999999999999999996 577789999999999999999999 899999996 6 99999999888
Q ss_pred CC--------Ccc-----------------------eEEEEeeeeEE-EEc-ceEeCCC----CccccccC--CCCCCC-
Q 047322 101 GN--------SGF-----------------------WILFYKVNRLS-IHG-GTIDATG----AGYWACRK--SGKSCP- 140 (343)
Q Consensus 101 ~~--------~~~-----------------------~i~~~~~~ni~-I~G-G~idg~g----~~~w~~~~--~~~~~~- 140 (343)
+. ..+ .+.....++.. |.| ++++|++ ..||.... ..+...
T Consensus 155 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~g~~d~~~~~~~~~~~~n~~~i~g~~~i~g~~~~~g~~~~~~~g~~~~~i~~~ 234 (542)
T COG5434 155 PSFTSRFNGNSGPYVYATDSDNAMISGEGLADGKADLLIAGNSSNRKEIWGKGTIDGNGYKRGDKWFSGLGAVETRIGGK 234 (542)
T ss_pred cccccccccccCcceeeecccCceeeeecccccCcccceeccCCceEEEeccceecCccccchhhhhhcccchhhccccc
Confidence 83 111 12222235555 888 8999864 12665433 111111
Q ss_pred -CCceEEEEEecCcEEEEeeEEecCCccEEEEeceecEEEEeEEEECCCCCCCCCeeeeeCcccEEEEccEEecCCceEE
Q 047322 141 -PPTRSISFVGASNIVVSGLTSINSRFFHIAIDECVNIMLRKLKINAPSWSPNTDGIHIQSSSGITISNSAIMTGDDCIS 219 (343)
Q Consensus 141 -~~~~~i~~~~~~nv~i~~v~i~n~~~~~i~~~~~~~v~i~~~~i~~~~~~~~~DGi~~~~s~nv~I~n~~i~~~dD~i~ 219 (343)
.||..+.+..|.||++++++|.+++.|.+++..|++++++|++|.++... |+|||++.+|+||+|++|+|.++||||+
T Consensus 235 ~~rp~~~~l~~c~NV~~~g~~i~ns~~~~~h~~~~~nl~~~nl~I~~~~~~-NtDG~d~~sc~NvlI~~~~fdtgDD~I~ 313 (542)
T COG5434 235 GVRPRTVVLKGCRNVLLEGLNIKNSPLWTVHPVDCDNLTFRNLTIDANRFD-NTDGFDPGSCSNVLIEGCRFDTGDDCIA 313 (542)
T ss_pred CcCCceEEEeccceEEEeeeEecCCCcEEEeeecccCceecceEEECCCCC-CCCccccccceeEEEeccEEecCCceEE
Confidence 58999999999999999999999999999999999999999999987653 9999999999999999999999999999
Q ss_pred eCCC-----------ceeEEEEeeEEcCCce-EEEeecccCcCcccccCcEEEEEEEceEEeCCceEEEEEeecCCCCce
Q 047322 220 VGPG-----------TKNLWIERIACGPGHG-IRMKKALAALGPMLLKMVLKNVTVTDSIFTGTQNGVRIKTWARPSNGF 287 (343)
Q Consensus 220 i~~~-----------~~ni~i~n~~~~~~~g-i~i~~~~gs~g~~~~~~~~~ni~i~n~~~~~~~~gi~i~~~~~~~~g~ 287 (343)
++++ ++||.|+||++..+|| +.+ ||+ ..+.++||++|||.|.++.+|++||+..+ .+|.
T Consensus 314 iksg~~~~~~~~~~~~~~i~i~~c~~~~ghG~~v~----Gse----~~ggv~ni~ved~~~~~~d~GLRikt~~~-~gG~ 384 (542)
T COG5434 314 IKSGAGLDGKKGYGPSRNIVIRNCYFSSGHGGLVL----GSE----MGGGVQNITVEDCVMDNTDRGLRIKTNDG-RGGG 384 (542)
T ss_pred eecccCCcccccccccccEEEecceecccccceEe----eee----cCCceeEEEEEeeeeccCcceeeeeeecc-ccee
Confidence 9986 5899999999999996 777 776 47889999999999999999999999876 6799
Q ss_pred EEeEEEEeEEEecCCeeEE
Q 047322 288 ARNIRFRNIIMTKVFNPII 306 (343)
Q Consensus 288 i~nI~~~ni~~~~~~~~i~ 306 (343)
++||+|+++.+.++..+..
T Consensus 385 v~nI~~~~~~~~nv~t~~~ 403 (542)
T COG5434 385 VRNIVFEDNKMRNVKTKLS 403 (542)
T ss_pred EEEEEEecccccCccccee
Confidence 9999999999999854433
No 9
>TIGR03808 RR_plus_rpt_1 twin-arg-translocated uncharacterized repeat protein. Members of this protein family have a Sec-independent twin-arginine tranlocation (TAT) signal sequence, which enables tranfer of proteins folded around prosthetic groups to cross the plasma membrane. These proteins have four copies of a repeat of about 23 amino acids that resembles the beta-helix repeat. Beta-helix refers to a structural motif in which successive beta strands wind around to stack parallel in a right-handed helix, as in AlgG and related enzymes of carbohydrate metabolism. The twin-arginine motif suggests that members of this protein family bind some unknown cofactor.
Probab=99.95 E-value=6.7e-27 Score=218.36 Aligned_cols=246 Identities=13% Similarity=0.209 Sum_probs=189.3
Q ss_pred CceEEEeecCccCCCCcchHHHHHHHHHHhhhcCCCcEEEEcCcEEEEEeEEecCCCcccEEEEEe-eEEEecCCcCCcC
Q 047322 23 SAAYNVINFGAKPDGKSDATQAFLRAWSSACYSNSPATLHVPRGLFLVKSISFNGPCRHRIVFQID-GTIIAPSSYWSLG 101 (343)
Q Consensus 23 ~~~~~v~d~GA~gdg~tDdt~Aiq~Ai~~a~~~~~g~~V~ip~G~Y~~~~l~l~~~~ks~~~l~~~-g~l~~~~~~~~~~ 101 (343)
.+.+++.+|||++||.+|+|+|||+||++| +. ++++|.+|||+|+.+++.| +++++|..+ +.... .+.
T Consensus 35 ~r~~dv~~fGa~~dG~td~T~ALQaAIdaA-a~-gG~tV~Lp~G~Y~~G~L~L----~spltL~G~~gAt~~-----vId 103 (455)
T TIGR03808 35 TLGRDATQYGVRPNSPDDQTRALQRAIDEA-AR-AQTPLALPPGVYRTGPLRL----PSGAQLIGVRGATRL-----VFT 103 (455)
T ss_pred ccCCCHHHcCcCCCCcchHHHHHHHHHHHh-hc-CCCEEEECCCceecccEEE----CCCcEEEecCCcEEE-----EEc
Confidence 456899999999999999999999999854 43 4678999999999999999 688999888 33211 111
Q ss_pred CCcceEEEEeeeeEEEEcceEeCCCCccccccCCCCCCCCCceEEEEEecCcEEEEeeEEecCCccEEEEecee------
Q 047322 102 NSGFWILFYKVNRLSIHGGTIDATGAGYWACRKSGKSCPPPTRSISFVGASNIVVSGLTSINSRFFHIAIDECV------ 175 (343)
Q Consensus 102 ~~~~~i~~~~~~ni~I~GG~idg~g~~~w~~~~~~~~~~~~~~~i~~~~~~nv~i~~v~i~n~~~~~i~~~~~~------ 175 (343)
..+.++....+++|+|+|-+|+|.|..| ..++.+|++..|++++|++++|.++..|++.++.|+
T Consensus 104 G~~~lIiai~A~nVTIsGLtIdGsG~dl----------~~rdAgI~v~~a~~v~Iedn~L~gsg~FGI~L~~~~~~I~~N 173 (455)
T TIGR03808 104 GGPSLLSSEGADGIGLSGLTLDGGGIPL----------PQRRGLIHCQGGRDVRITDCEITGSGGNGIWLETVSGDISGN 173 (455)
T ss_pred CCceEEEEecCCCeEEEeeEEEeCCCcc----------cCCCCEEEEccCCceEEEeeEEEcCCcceEEEEcCcceEecc
Confidence 2245665666999999999999999754 346789999999999999999999988999999999
Q ss_pred ----------------cEEEEeEEEECCCC--------------------------------CCCCCeeeeeCcccEEEE
Q 047322 176 ----------------NIMLRKLKINAPSW--------------------------------SPNTDGIHIQSSSGITIS 207 (343)
Q Consensus 176 ----------------~v~i~~~~i~~~~~--------------------------------~~~~DGi~~~~s~nv~I~ 207 (343)
+.+|++.+|....+ ....+||+++.+.+++|+
T Consensus 174 ~I~g~~~~~I~lw~S~g~~V~~N~I~g~RD~gi~i~r~~~~~dg~~v~~n~i~~i~a~~gg~~~~GNGI~~~~a~~v~V~ 253 (455)
T TIGR03808 174 TITQIAVTAIVSFDALGLIVARNTIIGANDNGIEILRSAIGDDGTIVTDNRIEDIKAGPGGSGQYGNAINAFRAGNVIVR 253 (455)
T ss_pred eEeccccceEEEeccCCCEEECCEEEccCCCCeEEEEeeecCCcceeeccccccccccCCCcCCccccEEEEccCCeEEE
Confidence 88888888876333 235678999999999999
Q ss_pred ccEEecCC-ceEEeCCCceeEEEEeeEEcCCceEEEeecccCcCcccccCcEEEEEEEceEEeCCceEEEEEeecC-CCC
Q 047322 208 NSAIMTGD-DCISVGPGTKNLWIERIACGPGHGIRMKKALAALGPMLLKMVLKNVTVTDSIFTGTQNGVRIKTWAR-PSN 285 (343)
Q Consensus 208 n~~i~~~d-D~i~i~~~~~ni~i~n~~~~~~~gi~i~~~~gs~g~~~~~~~~~ni~i~n~~~~~~~~gi~i~~~~~-~~~ 285 (343)
+++|+.++ |+|.+.+ ++|+.|++++|..-.=+.+ -++ + ..+.-.|+|+++.+...|+.+....+ .+-
T Consensus 254 gN~I~~~r~dgI~~ns-ss~~~i~~N~~~~~R~~al----hym--f----s~~g~~i~~N~~~g~~~G~av~nf~~ggr~ 322 (455)
T TIGR03808 254 GNRIRNCDYSAVRGNS-ASNIQITGNSVSDVREVAL----YSE--F----AFEGAVIANNTVDGAAVGVSVCNFNEGGRL 322 (455)
T ss_pred CCEEeccccceEEEEc-ccCcEEECcEeeeeeeeEE----EEE--E----eCCCcEEeccEEecCcceEEEEeecCCceE
Confidence 99999988 9998886 6788999998875321122 112 0 11225677888888888998887642 233
Q ss_pred ceEEeEEEEeEEEec
Q 047322 286 GFARNIRFRNIIMTK 300 (343)
Q Consensus 286 g~i~nI~~~ni~~~~ 300 (343)
..++.=.++|++-+.
T Consensus 323 ~~~~gn~irn~~~~~ 337 (455)
T TIGR03808 323 AVVQGNIIRNLIPKR 337 (455)
T ss_pred EEEecceeeccccCC
Confidence 456777788887765
No 10
>PF12708 Pectate_lyase_3: Pectate lyase superfamily protein; PDB: 3EQN_A 3EQO_A 2PYG_A 2PYH_A 3SUC_A 3GQ7_A 3GQ9_A 3GQA_A 3GQ8_A 2VBE_A ....
Probab=99.90 E-value=8.7e-23 Score=180.66 Aligned_cols=213 Identities=22% Similarity=0.294 Sum_probs=128.6
Q ss_pred eEEEeecCccCCCCcchHHHHHHHHHHhhhcCCCcEEEEcCcEEEEEe-EEecCCCcccEEEEEee---E-EEecCCcCC
Q 047322 25 AYNVINFGAKPDGKSDATQAFLRAWSSACYSNSPATLHVPRGLFLVKS-ISFNGPCRHRIVFQIDG---T-IIAPSSYWS 99 (343)
Q Consensus 25 ~~~v~d~GA~gdg~tDdt~Aiq~Ai~~a~~~~~g~~V~ip~G~Y~~~~-l~l~~~~ks~~~l~~~g---~-l~~~~~~~~ 99 (343)
.++|+||||+|||.+|||+|||+||++ ++..++++||||||+|++.. +.+ +++++|+++| + +........
T Consensus 1 ~inv~~fGa~~dG~tDdt~Aiq~Ai~~-~~~~~g~~v~~P~G~Y~i~~~l~~----~s~v~l~G~g~~~~~~~~~~~~~~ 75 (225)
T PF12708_consen 1 FINVTDFGAKGDGVTDDTAAIQAAIDA-AAAAGGGVVYFPPGTYRISGTLII----PSNVTLRGAGGNSTILFLSGSGDS 75 (225)
T ss_dssp EEEGGGGT--TEEEEE-HHHHHHHHHH-HCSTTSEEEEE-SEEEEESS-EEE-----TTEEEEESSTTTEEEEECTTTST
T ss_pred CcceeecCcCCCCChhHHHHHHHhhhh-cccCCCeEEEEcCcEEEEeCCeEc----CCCeEEEccCCCeeEEEecCcccc
Confidence 379999999999999999999999954 45678999999999999987 888 6899999984 3 332222222
Q ss_pred cCCCcceEEEEe-eee--EEEEcceEeCCCCccccccCCCCCCCCCceEEEEEecCcEEEEeeEEecCCccEEEEeceec
Q 047322 100 LGNSGFWILFYK-VNR--LSIHGGTIDATGAGYWACRKSGKSCPPPTRSISFVGASNIVVSGLTSINSRFFHIAIDECVN 176 (343)
Q Consensus 100 ~~~~~~~i~~~~-~~n--i~I~GG~idg~g~~~w~~~~~~~~~~~~~~~i~~~~~~nv~i~~v~i~n~~~~~i~~~~~~~ 176 (343)
+........+.. ..+ +.|++-++++..... ......+.+..++++.|+++++.++...++.+..+..
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~i~nl~i~~~~~~~----------~~~~~~i~~~~~~~~~i~nv~~~~~~~~~i~~~~~~~ 145 (225)
T PF12708_consen 76 FSVVPGIGVFDSGNSNIGIQIRNLTIDGNGIDP----------NNNNNGIRFNSSQNVSISNVRIENSGGDGIYFNTGTD 145 (225)
T ss_dssp SCCEEEEEECCSCSCCEEEEEEEEEEEETCGCE-----------SCEEEEEETTEEEEEEEEEEEES-SS-SEEEECCEE
T ss_pred cccccceeeeecCCCCceEEEEeeEEEcccccC----------CCCceEEEEEeCCeEEEEeEEEEccCccEEEEEcccc
Confidence 210001111111 111 224444455444311 0113567777888888888888888777777775555
Q ss_pred EEEEeEEEECCCCCCCCCeeeeeC-cccEEEEccEEecCCceEEeCCCceeEEEEeeEEcC--CceEEEeecccCcCccc
Q 047322 177 IMLRKLKINAPSWSPNTDGIHIQS-SSGITISNSAIMTGDDCISVGPGTKNLWIERIACGP--GHGIRMKKALAALGPML 253 (343)
Q Consensus 177 v~i~~~~i~~~~~~~~~DGi~~~~-s~nv~I~n~~i~~~dD~i~i~~~~~ni~i~n~~~~~--~~gi~i~~~~gs~g~~~ 253 (343)
..+.+..... ++.+.+ +.++.+.+|.+..+++++.. +.++++|+||.+.. ..|+.+ ..
T Consensus 146 ~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~g~~~--~~~~~~i~n~~~~~~~~~gi~i----~~----- 206 (225)
T PF12708_consen 146 YRIIGSTHVS--------GIFIDNGSNNVIVNNCIFNGGDNGIIL--GNNNITISNNTFEGNCGNGINI----EG----- 206 (225)
T ss_dssp CEEECCEEEE--------EEEEESCEEEEEEECEEEESSSCSEEC--EEEEEEEECEEEESSSSESEEE----EE-----
T ss_pred CcEeecccce--------eeeeccceeEEEECCccccCCCceeEe--ecceEEEEeEEECCccceeEEE----EC-----
Confidence 4444333221 244433 34566678888777777422 24678888888765 246766 11
Q ss_pred ccCcEEEEEEEceEEeCCceEE
Q 047322 254 LKMVLKNVTVTDSIFTGTQNGV 275 (343)
Q Consensus 254 ~~~~~~ni~i~n~~~~~~~~gi 275 (343)
-.+++++|++|.++..|+
T Consensus 207 ----~~~~~i~n~~i~~~~~g~ 224 (225)
T PF12708_consen 207 ----GSNIIISNNTIENCDDGI 224 (225)
T ss_dssp ----CSEEEEEEEEEESSSEEE
T ss_pred ----CeEEEEEeEEEECCccCc
Confidence 133777777777776665
No 11
>PLN02793 Probable polygalacturonase
Probab=99.87 E-value=1.9e-19 Score=172.79 Aligned_cols=218 Identities=20% Similarity=0.226 Sum_probs=167.7
Q ss_pred ccEEEEEeeEEEecCCcCCcCC------------CcceEEEEeeeeEEEEcce-EeCCCCccccccCCCCCCCCCceEEE
Q 047322 81 HRIVFQIDGTIIAPSSYWSLGN------------SGFWILFYKVNRLSIHGGT-IDATGAGYWACRKSGKSCPPPTRSIS 147 (343)
Q Consensus 81 s~~~l~~~g~l~~~~~~~~~~~------------~~~~i~~~~~~ni~I~GG~-idg~g~~~w~~~~~~~~~~~~~~~i~ 147 (343)
+++++...|+|-+... .-|.. ...++.+.+++|++|+|-+ .+.. ...++
T Consensus 143 ~ni~ItG~G~IDG~G~-~ww~~~~~~~~~~~~~~rP~~i~f~~~~nv~v~gitl~nSp-----------------~~~i~ 204 (443)
T PLN02793 143 NHLTVEGGGTVNGMGH-EWWAQSCKINHTNPCRHAPTAITFHKCKDLRVENLNVIDSQ-----------------QMHIA 204 (443)
T ss_pred ceEEEEeceEEECCCc-ccccccccccCCCCccCCceEEEEEeeccEEEECeEEEcCC-----------------CeEEE
Confidence 5788888888765332 11110 1347899999999999944 4321 23588
Q ss_pred EEecCcEEEEeeEEecC----CccEEEEeceecEEEEeEEEECCCCCCCCCeeeee-CcccEEEEccEEecCCceEEeCC
Q 047322 148 FVGASNIVVSGLTSINS----RFFHIAIDECVNIMLRKLKINAPSWSPNTDGIHIQ-SSSGITISNSAIMTGDDCISVGP 222 (343)
Q Consensus 148 ~~~~~nv~i~~v~i~n~----~~~~i~~~~~~~v~i~~~~i~~~~~~~~~DGi~~~-~s~nv~I~n~~i~~~dD~i~i~~ 222 (343)
+.+|+|++|++++|.++ ..+||++..|++|+|+|++|.+.+ |.|.+. +|+||+|+||.+..++ +|+++|
T Consensus 205 ~~~~~nv~i~~l~I~~p~~spNTDGIdi~~s~nV~I~n~~I~~gD-----DcIaik~~s~nI~I~n~~c~~Gh-GisIGS 278 (443)
T PLN02793 205 FTNCRRVTISGLKVIAPATSPNTDGIHISASRGVVIKDSIVRTGD-----DCISIVGNSSRIKIRNIACGPGH-GISIGS 278 (443)
T ss_pred EEccCcEEEEEEEEECCCCCCCCCcEeeeccceEEEEeCEEeCCC-----CeEEecCCcCCEEEEEeEEeCCc-cEEEec
Confidence 99999999999999863 348999999999999999999854 778886 6899999999998876 799987
Q ss_pred C--------ceeEEEEeeEEcCC-ceEEEeecccCcCcccccCcEEEEEEEceEEeCCceEEEEEeecCC---------C
Q 047322 223 G--------TKNLWIERIACGPG-HGIRMKKALAALGPMLLKMVLKNVTVTDSIFTGTQNGVRIKTWARP---------S 284 (343)
Q Consensus 223 ~--------~~ni~i~n~~~~~~-~gi~i~~~~gs~g~~~~~~~~~ni~i~n~~~~~~~~gi~i~~~~~~---------~ 284 (343)
- .+||+|+||++.++ .|++||+-.| ..+.++||+|+|++|.+..++|.|...+.. .
T Consensus 279 lg~~~~~~~V~nV~v~n~~~~~t~~GirIKt~~g------~~G~v~nItf~ni~m~nv~~pI~I~q~Y~~~~~~~~~~ts 352 (443)
T PLN02793 279 LGKSNSWSEVRDITVDGAFLSNTDNGVRIKTWQG------GSGNASKITFQNIFMENVSNPIIIDQYYCDSRKPCANQTS 352 (443)
T ss_pred ccCcCCCCcEEEEEEEccEEeCCCceEEEEEeCC------CCEEEEEEEEEeEEEecCCceEEEEeeecCCCCCCCCCCC
Confidence 2 59999999999976 5999953222 245799999999999999999999875421 1
Q ss_pred CceEEeEEEEeEEEecCC-eeEEEEeeeCCCCCCCCCCCceEEEeEEEEeEEEEec
Q 047322 285 NGFARNIRFRNIIMTKVF-NPIIIDQNYCPDNHCPHQTSGVTISGVTYRNIKGTSA 339 (343)
Q Consensus 285 ~g~i~nI~~~ni~~~~~~-~~i~i~~~~~~~~~~~~~~~~~~i~~I~~~ni~~~~~ 339 (343)
...|+||+|+||+.+... .++.+.. .+..+++||+|+||+.+..
T Consensus 353 ~v~I~nI~~~nI~Gt~~~~~ai~l~c-----------s~~~pc~ni~l~nI~l~~~ 397 (443)
T PLN02793 353 AVKVENISFVHIKGTSATEEAIKFAC-----------SDSSPCEGLYLEDVQLLSS 397 (443)
T ss_pred CeEEEeEEEEEEEEEEcccccEEEEe-----------CCCCCEeeEEEEeeEEEec
Confidence 246999999999998753 4666542 1244699999999998754
No 12
>PLN02188 polygalacturonase/glycoside hydrolase family protein
Probab=99.85 E-value=2.6e-18 Score=163.22 Aligned_cols=221 Identities=21% Similarity=0.214 Sum_probs=167.9
Q ss_pred ccEEEEEeeEEEecCCcCCcC-----------CCcceEEEEeeeeEEEEcceEeCCCCccccccCCCCCCCCCceEEEEE
Q 047322 81 HRIVFQIDGTIIAPSSYWSLG-----------NSGFWILFYKVNRLSIHGGTIDATGAGYWACRKSGKSCPPPTRSISFV 149 (343)
Q Consensus 81 s~~~l~~~g~l~~~~~~~~~~-----------~~~~~i~~~~~~ni~I~GG~idg~g~~~w~~~~~~~~~~~~~~~i~~~ 149 (343)
.++++...|+|-+... .-|. ....++.|.+++|+.|+|-++...+ .+.+++.
T Consensus 122 ~ni~I~G~G~IDG~G~-~ww~~~~~~~~~~~~~rP~~i~f~~~~nv~i~gitl~nSp----------------~w~i~~~ 184 (404)
T PLN02188 122 NGLTLTGGGTFDGQGA-AAWPFNKCPIRKDCKLLPTSVKFVNMNNTVVRGITSVNSK----------------FFHIALV 184 (404)
T ss_pred eeEEEEeeEEEeCCCc-ccccccccccCCCCCcCceEEEEEeeeeEEEeCeEEEcCC----------------CeEEEEE
Confidence 5677777788776432 1121 1134788999999999995443211 2368999
Q ss_pred ecCcEEEEeeEEecC----CccEEEEeceecEEEEeEEEECCCCCCCCCeeeee-CcccEEEEccEEecCCceEEeCC--
Q 047322 150 GASNIVVSGLTSINS----RFFHIAIDECVNIMLRKLKINAPSWSPNTDGIHIQ-SSSGITISNSAIMTGDDCISVGP-- 222 (343)
Q Consensus 150 ~~~nv~i~~v~i~n~----~~~~i~~~~~~~v~i~~~~i~~~~~~~~~DGi~~~-~s~nv~I~n~~i~~~dD~i~i~~-- 222 (343)
+|++++|++++|.++ ..+|+++..|++|+|+|++|.+.+ |+|.+. +++||+|+||....++ +++++|
T Consensus 185 ~~~~v~i~~v~I~~~~~spNtDGidi~~s~nV~I~n~~I~~GD-----DcIaiksg~~nI~I~n~~c~~gh-GisiGSlG 258 (404)
T PLN02188 185 ECRNFKGSGLKISAPSDSPNTDGIHIERSSGVYISDSRIGTGD-----DCISIGQGNSQVTITRIRCGPGH-GISVGSLG 258 (404)
T ss_pred ccccEEEEEEEEeCCCCCCCCCcEeeeCcccEEEEeeEEeCCC-----cEEEEccCCccEEEEEEEEcCCC-cEEeCCCC
Confidence 999999999999863 238999999999999999999844 789986 5789999999998775 799877
Q ss_pred ------CceeEEEEeeEEcCC-ceEEEeecccCcCcccccCcEEEEEEEceEEeCCceEEEEEeecC---------CCCc
Q 047322 223 ------GTKNLWIERIACGPG-HGIRMKKALAALGPMLLKMVLKNVTVTDSIFTGTQNGVRIKTWAR---------PSNG 286 (343)
Q Consensus 223 ------~~~ni~i~n~~~~~~-~gi~i~~~~gs~g~~~~~~~~~ni~i~n~~~~~~~~gi~i~~~~~---------~~~g 286 (343)
+.+||+|+||++.++ +|++||+-.+.- ..+.++||+|+|++|.+..++|.|..... +...
T Consensus 259 ~~~~~~~V~nV~v~n~~~~~t~~GiriKt~~g~~----~~G~v~nI~f~ni~m~~v~~pI~i~~~Y~~~~~~~~~~~s~v 334 (404)
T PLN02188 259 RYPNEGDVTGLVVRDCTFTGTTNGIRIKTWANSP----GKSAATNMTFENIVMNNVTNPIIIDQKYCPFYSCESKYPSGV 334 (404)
T ss_pred CCCcCCcEEEEEEEeeEEECCCcEEEEEEecCCC----CceEEEEEEEEeEEecCccceEEEEccccCCCCCCcCCCCCc
Confidence 259999999999986 599996432221 24579999999999999999999986321 1235
Q ss_pred eEEeEEEEeEEEecC-CeeEEEEeeeCCCCCCCCCCCceEEEeEEEEeEEEEec
Q 047322 287 FARNIRFRNIIMTKV-FNPIIIDQNYCPDNHCPHQTSGVTISGVTYRNIKGTSA 339 (343)
Q Consensus 287 ~i~nI~~~ni~~~~~-~~~i~i~~~~~~~~~~~~~~~~~~i~~I~~~ni~~~~~ 339 (343)
.|+||+|+||+.+.. +.++.+.. .+..+++||+|+||+.+..
T Consensus 335 ~I~nIt~~nI~gt~~~~~a~~l~c-----------s~~~pc~ni~~~nV~i~~~ 377 (404)
T PLN02188 335 TLSDIYFKNIRGTSSSQVAVLLKC-----------SRGVPCQGVYLQDVHLDLS 377 (404)
T ss_pred EEEeEEEEEEEEEecCceEEEEEE-----------CCCCCEeeEEEEeeEEEec
Confidence 799999999999875 34555542 1244699999999998765
No 13
>PLN03003 Probable polygalacturonase At3g15720
Probab=99.85 E-value=2.3e-18 Score=164.26 Aligned_cols=219 Identities=21% Similarity=0.212 Sum_probs=167.3
Q ss_pred ccEEEEEeeEEEecCCcCCcC---CCcceEEEEeeeeEEEEcceEeCCCCccccccCCCCCCCCCceEEEEEecCcEEEE
Q 047322 81 HRIVFQIDGTIIAPSSYWSLG---NSGFWILFYKVNRLSIHGGTIDATGAGYWACRKSGKSCPPPTRSISFVGASNIVVS 157 (343)
Q Consensus 81 s~~~l~~~g~l~~~~~~~~~~---~~~~~i~~~~~~ni~I~GG~idg~g~~~w~~~~~~~~~~~~~~~i~~~~~~nv~i~ 157 (343)
+++++...|+|-+... .-|. ....++.+.+++|+.|+|-++-.. ....+++.+|++++|+
T Consensus 113 ~~i~I~G~GtIDGqG~-~wW~~~~~rP~~l~f~~~~nv~I~gitl~NS----------------p~w~i~i~~c~nV~i~ 175 (456)
T PLN03003 113 EGLVIEGDGEINGQGS-SWWEHKGSRPTALKFRSCNNLRLSGLTHLDS----------------PMAHIHISECNYVTIS 175 (456)
T ss_pred cceEEeccceEeCCch-hhhhcccCCceEEEEEecCCcEEeCeEEecC----------------CcEEEEEeccccEEEE
Confidence 6788888888765332 1222 123578899999999999444221 1236899999999999
Q ss_pred eeEEecC---C-ccEEEEeceecEEEEeEEEECCCCCCCCCeeeee-CcccEEEEccEEecCCceEEeCCC--------c
Q 047322 158 GLTSINS---R-FFHIAIDECVNIMLRKLKINAPSWSPNTDGIHIQ-SSSGITISNSAIMTGDDCISVGPG--------T 224 (343)
Q Consensus 158 ~v~i~n~---~-~~~i~~~~~~~v~i~~~~i~~~~~~~~~DGi~~~-~s~nv~I~n~~i~~~dD~i~i~~~--------~ 224 (343)
+++|.++ | .+|+++..|++|+|+|+.|.+.+ |+|.+. +|+||+|+||.+..++ +|+++|- .
T Consensus 176 ~l~I~ap~~spNTDGIDi~~S~nV~I~n~~I~tGD-----DCIaiksgs~NI~I~n~~c~~GH-GISIGSlg~~g~~~~V 249 (456)
T PLN03003 176 SLRINAPESSPNTDGIDVGASSNVVIQDCIIATGD-----DCIAINSGTSNIHISGIDCGPGH-GISIGSLGKDGETATV 249 (456)
T ss_pred EEEEeCCCCCCCCCcEeecCcceEEEEecEEecCC-----CeEEeCCCCccEEEEeeEEECCC-CeEEeeccCCCCcceE
Confidence 9999863 2 38999999999999999999854 778886 5789999999998775 7998872 6
Q ss_pred eeEEEEeeEEcCC-ceEEEeecccCcCcccccCcEEEEEEEceEEeCCceEEEEEeecCC-----------CCceEEeEE
Q 047322 225 KNLWIERIACGPG-HGIRMKKALAALGPMLLKMVLKNVTVTDSIFTGTQNGVRIKTWARP-----------SNGFARNIR 292 (343)
Q Consensus 225 ~ni~i~n~~~~~~-~gi~i~~~~gs~g~~~~~~~~~ni~i~n~~~~~~~~gi~i~~~~~~-----------~~g~i~nI~ 292 (343)
+||+|+||++.++ +|++||+--| ..+.++||+|+|++|.+..++|.|.....+ ....|+||+
T Consensus 250 ~NV~v~n~~~~~T~nGvRIKT~~G------g~G~v~nItf~nI~m~nV~~pI~Idq~Y~~~~~~~~~~~~~s~v~IsnI~ 323 (456)
T PLN03003 250 ENVCVQNCNFRGTMNGARIKTWQG------GSGYARMITFNGITLDNVENPIIIDQFYNGGDSDNAKDRKSSAVEVSKVV 323 (456)
T ss_pred EEEEEEeeEEECCCcEEEEEEeCC------CCeEEEEEEEEeEEecCccceEEEEcccCCCCCCCcccCCCCCcEEEeEE
Confidence 9999999999986 5999954322 135799999999999999999999765421 124799999
Q ss_pred EEeEEEecC-CeeEEEEeeeCCCCCCCCCCCceEEEeEEEEeEEEEec
Q 047322 293 FRNIIMTKV-FNPIIIDQNYCPDNHCPHQTSGVTISGVTYRNIKGTSA 339 (343)
Q Consensus 293 ~~ni~~~~~-~~~i~i~~~~~~~~~~~~~~~~~~i~~I~~~ni~~~~~ 339 (343)
|+||+.+.. +.++.+. | .+..+.+||+|+||..+..
T Consensus 324 f~NI~GTs~~~~ai~l~--------C---s~~~PC~nI~l~ni~l~~~ 360 (456)
T PLN03003 324 FSNFIGTSKSEYGVDFR--------C---SERVPCTEIFLRDMKIETA 360 (456)
T ss_pred EEeEEEEeCccceEEEE--------e---CCCCCeeeEEEEEEEEEec
Confidence 999998654 3466554 2 1244688999999988765
No 14
>PLN02155 polygalacturonase
Probab=99.84 E-value=3.5e-18 Score=161.64 Aligned_cols=197 Identities=17% Similarity=0.209 Sum_probs=154.7
Q ss_pred ceEEEEeeeeEEEEcceEeCCCCccccccCCCCCCCCCceEEEEEecCcEEEEeeEEecCC----ccEEEEeceecEEEE
Q 047322 105 FWILFYKVNRLSIHGGTIDATGAGYWACRKSGKSCPPPTRSISFVGASNIVVSGLTSINSR----FFHIAIDECVNIMLR 180 (343)
Q Consensus 105 ~~i~~~~~~ni~I~GG~idg~g~~~w~~~~~~~~~~~~~~~i~~~~~~nv~i~~v~i~n~~----~~~i~~~~~~~v~i~ 180 (343)
.++.+.++++++|+|-++... ....+++.+|+|++|++++|.++. .+|+++..|++|+|+
T Consensus 146 ~~i~~~~~~nv~i~gitl~nS----------------p~w~i~~~~~~nv~i~~v~I~~p~~~~NtDGidi~~s~nV~I~ 209 (394)
T PLN02155 146 RSISFNSAKDVIISGVKSMNS----------------QVSHMTLNGCTNVVVRNVKLVAPGNSPNTDGFHVQFSTGVTFT 209 (394)
T ss_pred cceeEEEeeeEEEECeEEEcC----------------CCeEEEEECeeeEEEEEEEEECCCCCCCCCccccccceeEEEE
Confidence 468889999999999444211 134689999999999999998742 289999999999999
Q ss_pred eEEEECCCCCCCCCeeeee-CcccEEEEccEEecCCceEEeCCC--------ceeEEEEeeEEcCC-ceEEEeecccCcC
Q 047322 181 KLKINAPSWSPNTDGIHIQ-SSSGITISNSAIMTGDDCISVGPG--------TKNLWIERIACGPG-HGIRMKKALAALG 250 (343)
Q Consensus 181 ~~~i~~~~~~~~~DGi~~~-~s~nv~I~n~~i~~~dD~i~i~~~--------~~ni~i~n~~~~~~-~gi~i~~~~gs~g 250 (343)
|+.|.+.+ |+|.+. +|+||+|+||.+..++ +++++|. .+||+|+||++.++ .|++||+- .+
T Consensus 210 ~~~I~~gD-----DcIaik~gs~nI~I~n~~c~~Gh-GisIGS~g~~~~~~~V~nV~v~n~~~~~t~~GirIKT~---~~ 280 (394)
T PLN02155 210 GSTVQTGD-----DCVAIGPGTRNFLITKLACGPGH-GVSIGSLAKELNEDGVENVTVSSSVFTGSQNGVRIKSW---AR 280 (394)
T ss_pred eeEEecCC-----ceEEcCCCCceEEEEEEEEECCc-eEEeccccccCCCCcEEEEEEEeeEEeCCCcEEEEEEe---cC
Confidence 99999854 678887 4789999999998875 7999882 49999999999976 59999531 11
Q ss_pred cccccCcEEEEEEEceEEeCCceEEEEEeecCC---------CCceEEeEEEEeEEEecCC-eeEEEEeeeCCCCCCCCC
Q 047322 251 PMLLKMVLKNVTVTDSIFTGTQNGVRIKTWARP---------SNGFARNIRFRNIIMTKVF-NPIIIDQNYCPDNHCPHQ 320 (343)
Q Consensus 251 ~~~~~~~~~ni~i~n~~~~~~~~gi~i~~~~~~---------~~g~i~nI~~~ni~~~~~~-~~i~i~~~~~~~~~~~~~ 320 (343)
...+.++||+|+|++|.+..++|.|.....+ ....|+||+|+|++.+... .++.+..
T Consensus 281 --~~gG~v~nI~f~ni~m~~v~~pI~i~q~Y~~~~~~~~~~~s~v~i~~It~~ni~gt~~~~~a~~l~c----------- 347 (394)
T PLN02155 281 --PSTGFVRNVFFQDLVMKNVENPIIIDQNYCPTHEGCPNEYSGVKISQVTYKNIQGTSATQEAMKLVC----------- 347 (394)
T ss_pred --CCCEEEEEEEEEeEEEcCccccEEEEecccCCCCCCcCCCCCeEEEEEEEEeeEEEecCCceEEEEe-----------
Confidence 1246899999999999999999999764321 1236999999999998763 4666542
Q ss_pred CCceEEEeEEEEeEEEEec
Q 047322 321 TSGVTISGVTYRNIKGTSA 339 (343)
Q Consensus 321 ~~~~~i~~I~~~ni~~~~~ 339 (343)
.+..+++||+|+||+.+..
T Consensus 348 ~~~~pc~~I~l~nv~i~~~ 366 (394)
T PLN02155 348 SKSSPCTGITLQDIKLTYN 366 (394)
T ss_pred CCCCCEEEEEEEeeEEEec
Confidence 1244699999999998864
No 15
>PLN02218 polygalacturonase ADPG
Probab=99.84 E-value=1.1e-18 Score=166.87 Aligned_cols=195 Identities=19% Similarity=0.203 Sum_probs=153.5
Q ss_pred ceEEEEeeeeEEEEcceEeCCCCccccccCCCCCCCCCceEEEEEecCcEEEEeeEEecC----CccEEEEeceecEEEE
Q 047322 105 FWILFYKVNRLSIHGGTIDATGAGYWACRKSGKSCPPPTRSISFVGASNIVVSGLTSINS----RFFHIAIDECVNIMLR 180 (343)
Q Consensus 105 ~~i~~~~~~ni~I~GG~idg~g~~~w~~~~~~~~~~~~~~~i~~~~~~nv~i~~v~i~n~----~~~~i~~~~~~~v~i~ 180 (343)
.++.|.+++|++|+|-++.... ...+++.+|+|++|++++|.++ ..+|+++..|+||+|+
T Consensus 193 ~~i~f~~~~nv~I~gitl~nSp----------------~w~i~~~~~~nV~i~~v~I~a~~~spNTDGIdi~ss~nV~I~ 256 (431)
T PLN02218 193 TALTFYNSKSLIVKNLRVRNAQ----------------QIQISIEKCSNVQVSNVVVTAPADSPNTDGIHITNTQNIRVS 256 (431)
T ss_pred EEEEEEccccEEEeCeEEEcCC----------------CEEEEEEceeeEEEEEEEEeCCCCCCCCCcEeecccceEEEE
Confidence 4688999999999995553221 2468999999999999999863 3389999999999999
Q ss_pred eEEEECCCCCCCCCeeeee-CcccEEEEccEEecCCceEEeCCC--------ceeEEEEeeEEcCC-ceEEEeecccCcC
Q 047322 181 KLKINAPSWSPNTDGIHIQ-SSSGITISNSAIMTGDDCISVGPG--------TKNLWIERIACGPG-HGIRMKKALAALG 250 (343)
Q Consensus 181 ~~~i~~~~~~~~~DGi~~~-~s~nv~I~n~~i~~~dD~i~i~~~--------~~ni~i~n~~~~~~-~gi~i~~~~gs~g 250 (343)
|++|.+.+ |.|.+. +++||+|+||++..++ +++++|- .+||+|+||++.++ .|++||+--|
T Consensus 257 n~~I~tGD-----DcIaIksgs~nI~I~n~~c~~GH-GisIGS~g~~~~~~~V~nV~v~n~~~~~t~nGvRIKT~~G--- 327 (431)
T PLN02218 257 NSIIGTGD-----DCISIESGSQNVQINDITCGPGH-GISIGSLGDDNSKAFVSGVTVDGAKLSGTDNGVRIKTYQG--- 327 (431)
T ss_pred ccEEecCC-----ceEEecCCCceEEEEeEEEECCC-CEEECcCCCCCCCceEEEEEEEccEEecCCcceEEeecCC---
Confidence 99999854 678886 5889999999998775 7999872 48999999999886 5999954222
Q ss_pred cccccCcEEEEEEEceEEeCCceEEEEEeecCC--------CCceEEeEEEEeEEEecCC-eeEEEEeeeCCCCCCCCCC
Q 047322 251 PMLLKMVLKNVTVTDSIFTGTQNGVRIKTWARP--------SNGFARNIRFRNIIMTKVF-NPIIIDQNYCPDNHCPHQT 321 (343)
Q Consensus 251 ~~~~~~~~~ni~i~n~~~~~~~~gi~i~~~~~~--------~~g~i~nI~~~ni~~~~~~-~~i~i~~~~~~~~~~~~~~ 321 (343)
..+.++||+|+|++|.+..++|.|...+.+ ....|+||+|+||+.+... .++.+.. .
T Consensus 328 ---g~G~v~nI~f~ni~m~~V~~pI~Idq~Y~~~~~~~~~~s~v~I~nI~~~NI~gtsa~~~ai~l~c--s--------- 393 (431)
T PLN02218 328 ---GSGTASNIIFQNIQMENVKNPIIIDQDYCDKSKCTSQQSAVQVKNVVYRNISGTSASDVAITFNC--S--------- 393 (431)
T ss_pred ---CCeEEEEEEEEeEEEEcccccEEEEeeccCCCCCCCCCCCeEEEEEEEEeEEEEecCCcEEEEEE--C---------
Confidence 246899999999999999999999875421 2346999999999998653 4555542 1
Q ss_pred CceEEEeEEEEeEEEEe
Q 047322 322 SGVTISGVTYRNIKGTS 338 (343)
Q Consensus 322 ~~~~i~~I~~~ni~~~~ 338 (343)
+..+++||+|+||+.+.
T Consensus 394 ~~~pc~nI~l~nV~i~~ 410 (431)
T PLN02218 394 KNYPCQGIVLDNVNIKG 410 (431)
T ss_pred CCCCEeeEEEEeEEEEC
Confidence 23468888888888765
No 16
>PLN03010 polygalacturonase
Probab=99.81 E-value=4.3e-17 Score=154.57 Aligned_cols=215 Identities=21% Similarity=0.197 Sum_probs=162.0
Q ss_pred ccEEEEEeeEEEecCCcCCcCCCcceEEEEeeeeEEEEcceEeCCCCccccccCCCCCCCCCceEEEEEecCcEEEEeeE
Q 047322 81 HRIVFQIDGTIIAPSSYWSLGNSGFWILFYKVNRLSIHGGTIDATGAGYWACRKSGKSCPPPTRSISFVGASNIVVSGLT 160 (343)
Q Consensus 81 s~~~l~~~g~l~~~~~~~~~~~~~~~i~~~~~~ni~I~GG~idg~g~~~w~~~~~~~~~~~~~~~i~~~~~~nv~i~~v~ 160 (343)
+++++...|+|.+... .-| .++.+.+++|++|+|-++-..+ ...+++.+|++++|++++
T Consensus 139 ~nv~I~G~G~IDG~G~-~ww----~~l~~~~~~nv~v~gitl~nsp----------------~~~i~i~~~~nv~i~~i~ 197 (409)
T PLN03010 139 SGLMIDGSGTIDGRGS-SFW----EALHISKCDNLTINGITSIDSP----------------KNHISIKTCNYVAISKIN 197 (409)
T ss_pred cccEEeeceEEeCCCc-ccc----ceEEEEeecCeEEeeeEEEcCC----------------ceEEEEeccccEEEEEEE
Confidence 6777777788765321 122 2588899999999994442211 235888999999999999
Q ss_pred EecC----CccEEEEeceecEEEEeEEEECCCCCCCCCeeeeeC-cccEEEEccEEecCCceEEeCCC--------ceeE
Q 047322 161 SINS----RFFHIAIDECVNIMLRKLKINAPSWSPNTDGIHIQS-SSGITISNSAIMTGDDCISVGPG--------TKNL 227 (343)
Q Consensus 161 i~n~----~~~~i~~~~~~~v~i~~~~i~~~~~~~~~DGi~~~~-s~nv~I~n~~i~~~dD~i~i~~~--------~~ni 227 (343)
|.++ ..+|+++..|++|+|+|++|.+.+ |+|.+.+ ++++.|+++....++ +++++|- .+||
T Consensus 198 I~a~~~s~NTDGiDi~~s~nV~I~n~~I~~gD-----DcIaiksgs~ni~I~~~~C~~gH-GisIGS~g~~~~~~~V~nV 271 (409)
T PLN03010 198 ILAPETSPNTDGIDISYSTNINIFDSTIQTGD-----DCIAINSGSSNINITQINCGPGH-GISVGSLGADGANAKVSDV 271 (409)
T ss_pred EeCCCCCCCCCceeeeccceEEEEeeEEecCC-----CeEEecCCCCcEEEEEEEeECcC-CEEEccCCCCCCCCeeEEE
Confidence 9874 237999999999999999999854 7788864 568888888776664 7999873 5999
Q ss_pred EEEeeEEcCC-ceEEEeecccCcCcccccCcEEEEEEEceEEeCCceEEEEEeecCC---------CCceEEeEEEEeEE
Q 047322 228 WIERIACGPG-HGIRMKKALAALGPMLLKMVLKNVTVTDSIFTGTQNGVRIKTWARP---------SNGFARNIRFRNII 297 (343)
Q Consensus 228 ~i~n~~~~~~-~gi~i~~~~gs~g~~~~~~~~~ni~i~n~~~~~~~~gi~i~~~~~~---------~~g~i~nI~~~ni~ 297 (343)
+|+||++.++ .|++||+--| ..+.++||+|+|++|.+..++|.|...+.. ....|+||+|+|++
T Consensus 272 ~v~n~~i~~t~~GirIKt~~G------~~G~v~nItf~nI~m~~v~~pI~I~q~Y~~~~~~~~~~~s~v~Isdi~~~ni~ 345 (409)
T PLN03010 272 HVTHCTFNQTTNGARIKTWQG------GQGYARNISFENITLINTKNPIIIDQQYIDKGKLDATKDSAVAISNVKYVGFR 345 (409)
T ss_pred EEEeeEEeCCCcceEEEEecC------CCEEEEEeEEEeEEEecCCccEEEEeeccCCCCCCCCCCCceEEEeEEEEeeE
Confidence 9999999986 5999953222 245799999999999999999999875431 12268999999999
Q ss_pred EecC-CeeEEEEeeeCCCCCCCCCCCceEEEeEEEEeEEEEec
Q 047322 298 MTKV-FNPIIIDQNYCPDNHCPHQTSGVTISGVTYRNIKGTSA 339 (343)
Q Consensus 298 ~~~~-~~~i~i~~~~~~~~~~~~~~~~~~i~~I~~~ni~~~~~ 339 (343)
.+.. +.++.+. |. +..+.+||+|+||..+..
T Consensus 346 GT~~~~~~i~l~--------Cs---~~~pC~ni~~~~v~l~~~ 377 (409)
T PLN03010 346 GTTSNENAITLK--------CS---AITHCKDVVMDDIDVTME 377 (409)
T ss_pred EEeCCCccEEEE--------eC---CCCCEeceEEEEEEEEec
Confidence 9754 3466654 21 233688899999888754
No 17
>PF00295 Glyco_hydro_28: Glycosyl hydrolases family 28; InterPro: IPR000743 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 28 GH28 from CAZY comprises enzymes with several known activities; polygalacturonase (3.2.1.15 from EC); exo-polygalacturonase (3.2.1.67 from EC); exo-polygalacturonase (3.2.1.82 from EC); rhamnogalacturonase (EC not defined). Polygalacturonase (PG) (pectinase) [, ] catalyses the random hydrolysis of 1,4-alpha-D-galactosiduronic linkages in pectate and other galacturonans. In fruit, polygalacturonase plays an important role in cell wall metabolism during ripening. In plant bacterial pathogens such as Erwinia carotovora or Ralstonia solanacearum (Pseudomonas solanacearum) and fungal pathogens such as Aspergillus niger, polygalacturonase is involved in maceration and soft-rotting of plant tissue. Exo-poly-alpha-D-galacturonosidase (3.2.1.82 from EC) (exoPG) [] hydrolyses peptic acid from the non-reducing end, releasing digalacturonate. PG and exoPG share a few regions of sequence similarity, and belong to family 28 of the glycosyl hydrolases.; GO: 0004650 polygalacturonase activity, 0005975 carbohydrate metabolic process; PDB: 1KCC_A 1KCD_A 1K5C_A 1HG8_A 2IQ7_A 2UVF_B 1RMG_A 1CZF_B 3JUR_C 1BHE_A ....
Probab=99.81 E-value=1.1e-17 Score=156.14 Aligned_cols=196 Identities=28% Similarity=0.292 Sum_probs=154.0
Q ss_pred cceEEEEeeeeEEEEcceEeCCCCccccccCCCCCCCCCceEEEEEecCcEEEEeeEEecCC----ccEEEEeceecEEE
Q 047322 104 GFWILFYKVNRLSIHGGTIDATGAGYWACRKSGKSCPPPTRSISFVGASNIVVSGLTSINSR----FFHIAIDECVNIML 179 (343)
Q Consensus 104 ~~~i~~~~~~ni~I~GG~idg~g~~~w~~~~~~~~~~~~~~~i~~~~~~nv~i~~v~i~n~~----~~~i~~~~~~~v~i 179 (343)
..++.+.++++++|+|-++.... .+.+++.+|+|++|++++|.++. .+|+++..|++|+|
T Consensus 92 p~~i~~~~~~~~~i~~i~~~nsp----------------~w~~~~~~~~nv~i~~i~I~~~~~~~NtDGid~~~s~nv~I 155 (326)
T PF00295_consen 92 PRLIRFNNCKNVTIEGITIRNSP----------------FWHIHINDCDNVTISNITINNPANSPNTDGIDIDSSKNVTI 155 (326)
T ss_dssp SESEEEEEEEEEEEESEEEES-S----------------SESEEEESEEEEEEESEEEEEGGGCTS--SEEEESEEEEEE
T ss_pred cceeeeeeecceEEEeeEecCCC----------------eeEEEEEccCCeEEcceEEEecCCCCCcceEEEEeeeEEEE
Confidence 46789999999999994443211 23578899999999999998753 37999999999999
Q ss_pred EeEEEECCCCCCCCCeeeeeCcc-cEEEEccEEecCCceEEeCC---C-----ceeEEEEeeEEcCC-ceEEEeecccCc
Q 047322 180 RKLKINAPSWSPNTDGIHIQSSS-GITISNSAIMTGDDCISVGP---G-----TKNLWIERIACGPG-HGIRMKKALAAL 249 (343)
Q Consensus 180 ~~~~i~~~~~~~~~DGi~~~~s~-nv~I~n~~i~~~dD~i~i~~---~-----~~ni~i~n~~~~~~-~gi~i~~~~gs~ 249 (343)
+|+.|.+.+ |.|.+.+.+ ||+|+||++..+. ++++++ + .+||+|+||++.++ .|+.||+ .
T Consensus 156 ~n~~i~~gD-----D~Iaiks~~~ni~v~n~~~~~gh-GisiGS~~~~~~~~~i~nV~~~n~~i~~t~~gi~iKt----~ 225 (326)
T PF00295_consen 156 ENCFIDNGD-----DCIAIKSGSGNILVENCTCSGGH-GISIGSEGSGGSQNDIRNVTFENCTIINTDNGIRIKT----W 225 (326)
T ss_dssp ESEEEESSS-----ESEEESSEECEEEEESEEEESSS-EEEEEEESSSSE--EEEEEEEEEEEEESESEEEEEEE----E
T ss_pred EEeeccccc-----CcccccccccceEEEeEEEeccc-cceeeeccCCccccEEEeEEEEEEEeeccceEEEEEE----e
Confidence 999999844 779998655 9999999998765 588865 2 38999999999876 5999953 2
Q ss_pred CcccccCcEEEEEEEceEEeCCceEEEEEeecCC--------CCceEEeEEEEeEEEecCC-eeEEEEeeeCCCCCCCCC
Q 047322 250 GPMLLKMVLKNVTVTDSIFTGTQNGVRIKTWARP--------SNGFARNIRFRNIIMTKVF-NPIIIDQNYCPDNHCPHQ 320 (343)
Q Consensus 250 g~~~~~~~~~ni~i~n~~~~~~~~gi~i~~~~~~--------~~g~i~nI~~~ni~~~~~~-~~i~i~~~~~~~~~~~~~ 320 (343)
....+.++||+|+|++|.+..+++.|...... ....++||+|+||+..... .++.+..
T Consensus 226 --~~~~G~v~nI~f~ni~~~~v~~pi~i~~~y~~~~~~~~~~~~~~i~nI~~~nitg~~~~~~~i~i~~----------- 292 (326)
T PF00295_consen 226 --PGGGGYVSNITFENITMENVKYPIFIDQDYRDGGPCGKPPSGVSISNITFRNITGTSAGSSAISIDC----------- 292 (326)
T ss_dssp --TTTSEEEEEEEEEEEEEEEESEEEEEEEEECTTEESSCSSSSSEEEEEEEEEEEEEESTSEEEEEE------------
T ss_pred --cccceEEeceEEEEEEecCCceEEEEEeccccccccCcccCCceEEEEEEEeeEEEeccceEEEEEE-----------
Confidence 11356899999999999999899999864321 2357999999999998876 5776652
Q ss_pred CCceEEEeEEEEeEEEEe
Q 047322 321 TSGVTISGVTYRNIKGTS 338 (343)
Q Consensus 321 ~~~~~i~~I~~~ni~~~~ 338 (343)
.+..+++||+|+||..+.
T Consensus 293 ~~~~~~~ni~f~nv~i~~ 310 (326)
T PF00295_consen 293 SPGSPCSNITFENVNITG 310 (326)
T ss_dssp BTTSSEEEEEEEEEEEES
T ss_pred CCcCcEEeEEEEeEEEEc
Confidence 123469999999999987
No 18
>TIGR03805 beta_helix_1 parallel beta-helix repeat-containing protein. Members of this protein family contain a tandem pair of beta-helix repeats (see TIGR03804). Each repeat is expected to consist of three beta strands that form a single turn as they form a right-handed helix of stacked beta-structure. Member proteinsa occur regularly in two-gene pairs along with another uncharacterized protein family; both protein families exhibit either lipoprotein or regular signal peptides, suggesting transit through the plasma membrane, and the two may be fused. The function of the pair is unknown.
Probab=99.76 E-value=1.1e-16 Score=148.28 Aligned_cols=226 Identities=16% Similarity=0.233 Sum_probs=159.1
Q ss_pred HHHHHHHhhhcCCCcEEEEcCcEEEE-EeEEecCCCcccEEEEEee---EEE-ecCCcCCcCCCcceEEEEeeeeEEEEc
Q 047322 45 FLRAWSSACYSNSPATLHVPRGLFLV-KSISFNGPCRHRIVFQIDG---TII-APSSYWSLGNSGFWILFYKVNRLSIHG 119 (343)
Q Consensus 45 iq~Ai~~a~~~~~g~~V~ip~G~Y~~-~~l~l~~~~ks~~~l~~~g---~l~-~~~~~~~~~~~~~~i~~~~~~ni~I~G 119 (343)
||+||++| ..|++|++|+|+|.+ +++.+. +++++|..+| ++. +.... ..+..+.+. +++|+|++
T Consensus 1 iQ~Ai~~A---~~GDtI~l~~G~Y~~~~~l~I~---~~~Iti~G~g~~~tvid~~~~~----~~~~~i~v~-a~~VtI~~ 69 (314)
T TIGR03805 1 LQEALIAA---QPGDTIVLPEGVFQFDRTLSLD---ADGVTIRGAGMDETILDFSGQV----GGAEGLLVT-SDDVTLSD 69 (314)
T ss_pred CHhHHhhC---CCCCEEEECCCEEEcceeEEEe---CCCeEEEecCCCccEEecccCC----CCCceEEEE-eCCeEEEe
Confidence 69999865 568899999999997 568874 3688888775 322 21111 113344443 78999999
Q ss_pred ceEeCCCCccccccCCCCCCCCCceEEEEEecCcEEEEeeEEec-------CCccEEEEeceecEEEEeEEEECCCCCCC
Q 047322 120 GTIDATGAGYWACRKSGKSCPPPTRSISFVGASNIVVSGLTSIN-------SRFFHIAIDECVNIMLRKLKINAPSWSPN 192 (343)
Q Consensus 120 G~idg~g~~~w~~~~~~~~~~~~~~~i~~~~~~nv~i~~v~i~n-------~~~~~i~~~~~~~v~i~~~~i~~~~~~~~ 192 (343)
-++...+ ...|.+.+|++++|+++++.. ...+|+.+..|++++|+++++... .
T Consensus 70 ltI~~~~----------------~~GI~v~~s~~i~I~n~~i~~~~~~~~~~~~~GI~~~~s~~v~I~~n~i~g~----~ 129 (314)
T TIGR03805 70 LAVENTK----------------GDGVKVKGSDGIIIRRLRVEWTGGPKSSNGAYGIYPVESTNVLVEDSYVRGA----S 129 (314)
T ss_pred eEEEcCC----------------CCeEEEeCCCCEEEEeeEEEeccCccccCCcceEEEeccCCEEEECCEEECC----C
Confidence 5553321 125778899999999999862 246899999999999999999873 2
Q ss_pred CCeeeeeCcccEEEEccEEecCCceEEeCCCceeEEEEeeEEcCC-ceEEEeecccCcCcccccCcEEEEEEEceEEeCC
Q 047322 193 TDGIHIQSSSGITISNSAIMTGDDCISVGPGTKNLWIERIACGPG-HGIRMKKALAALGPMLLKMVLKNVTVTDSIFTGT 271 (343)
Q Consensus 193 ~DGi~~~~s~nv~I~n~~i~~~dD~i~i~~~~~ni~i~n~~~~~~-~gi~i~~~~gs~g~~~~~~~~~ni~i~n~~~~~~ 271 (343)
.+||.+..|++++|++|++.....||.+.. +.++.|+++++... .|+.+ ..+-.. .....+++.|+++.+.+.
T Consensus 130 d~GIyv~~s~~~~v~nN~~~~n~~GI~i~~-S~~~~v~~N~~~~N~~Gi~v----~~~p~~-~~~~s~~~~v~~N~i~~n 203 (314)
T TIGR03805 130 DAGIYVGQSQNIVVRNNVAEENVAGIEIEN-SQNADVYNNIATNNTGGILV----FDLPGL-PQPGGSNVRVFDNIIFDN 203 (314)
T ss_pred cccEEECCCCCeEEECCEEccCcceEEEEe-cCCcEEECCEEeccceeEEE----eecCCC-CcCCccceEEECCEEECC
Confidence 258999999999999999998888998874 78899999998764 47777 322100 112457999999999875
Q ss_pred ce-EEE-----EEeecCCCCceE----EeEEEEeEEEecCCe-eEEEE
Q 047322 272 QN-GVR-----IKTWARPSNGFA----RNIRFRNIIMTKVFN-PIIID 308 (343)
Q Consensus 272 ~~-gi~-----i~~~~~~~~g~i----~nI~~~ni~~~~~~~-~i~i~ 308 (343)
.. .+. +...+. ..|.+ +++.|+|.++.+... ++.+.
T Consensus 204 ~~~n~~~~gn~v~~~~~-g~Gi~i~~~~~v~I~~N~i~~n~~~~i~~~ 250 (314)
T TIGR03805 204 NTPNFAPAGSIVASVPA-GTGVVVMANRDVEIFGNVISNNDTANVLIS 250 (314)
T ss_pred CCCCCcccCCceecCCC-CcEEEEEcccceEEECCEEeCCcceeEEEE
Confidence 31 111 111111 23544 899999999998875 56654
No 19
>PF03718 Glyco_hydro_49: Glycosyl hydrolase family 49; InterPro: IPR005192 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is a family of dextranase (3.2.1.11 from EC) and isopullulanase (3.2.1.57 from EC) which are all members of glycoside hydrolase family 49 (GH49 from CAZY). Dextranase hydrolyses alpha-1,6-glycosidic bonds in dextran polymers.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds; PDB: 1X0C_A 1WMR_A 2Z8G_B 1OGM_X 1OGO_X.
Probab=99.72 E-value=3.8e-15 Score=141.09 Aligned_cols=218 Identities=17% Similarity=0.209 Sum_probs=129.3
Q ss_pred CCcEEEEcCcEEEEEe---EEecCCCccc-EEEEEe-eEEEecCCcCCcCCCcceEEEEeeeeEEEEc-ceEeCCCCccc
Q 047322 57 SPATLHVPRGLFLVKS---ISFNGPCRHR-IVFQID-GTIIAPSSYWSLGNSGFWILFYKVNRLSIHG-GTIDATGAGYW 130 (343)
Q Consensus 57 ~g~~V~ip~G~Y~~~~---l~l~~~~ks~-~~l~~~-g~l~~~~~~~~~~~~~~~i~~~~~~ni~I~G-G~idg~g~~~w 130 (343)
...++||+||+|.++. +.| +++ .+++++ |.+.. +.+......+|+.|.| |++.|....|.
T Consensus 231 s~~~lYF~PGVy~ig~~~~l~L----~sn~~~VYlApGAyVk----------GAf~~~~~~~nv~i~G~GVLSGe~Yvy~ 296 (582)
T PF03718_consen 231 SKDTLYFKPGVYWIGSDYHLRL----PSNTKWVYLAPGAYVK----------GAFEYTDTQQNVKITGRGVLSGEQYVYE 296 (582)
T ss_dssp SSSEEEE-SEEEEEBCTC-EEE-----TT--EEEE-TTEEEE----------S-EEE---SSEEEEESSSEEE-TTS-TT
T ss_pred CcceEEeCCceEEeCCCccEEE----CCCccEEEEcCCcEEE----------EEEEEccCCceEEEEeeEEEcCcceeEe
Confidence 4569999999999986 777 466 478888 54433 2333334689999999 99999876653
Q ss_pred cccCCC-------CCCCC-CceEEE---EEecCcEEEEeeEEecCCccEEEEecee----cEEEEeEEEECCCCCCCCCe
Q 047322 131 ACRKSG-------KSCPP-PTRSIS---FVGASNIVVSGLTSINSRFFHIAIDECV----NIMLRKLKINAPSWSPNTDG 195 (343)
Q Consensus 131 ~~~~~~-------~~~~~-~~~~i~---~~~~~nv~i~~v~i~n~~~~~i~~~~~~----~v~i~~~~i~~~~~~~~~DG 195 (343)
.....+ ..++. .-+++. ...++++.+++++|.++|.|.+.+.+.. ...|+|.++.... -.++||
T Consensus 297 A~~~e~y~~~s~A~~~~~~~lkm~~~~~~~g~q~~~~~GiTI~~pP~~Sm~l~g~~~~~~~~~i~nyKqVGaW-~~qtDG 375 (582)
T PF03718_consen 297 ADTEESYLHLSGAVKCHRESLKMLWHISANGGQTLTCEGITINDPPFHSMDLYGNENDKFSMNISNYKQVGAW-YFQTDG 375 (582)
T ss_dssp BBCCCTTSB-SSC---TTTB--SEEECS-SSSEEEEEES-EEE--SS-SEEEESSSGGGEEEEEEEEEEE----CTT---
T ss_pred ccCCCCccccccccccchhhhhhhhhhccCCcceEEEEeeEecCCCcceEEecCCccccccceeeceeeeeeE-EeccCC
Confidence 211110 01111 112333 4456799999999999999999998655 4899999999643 369999
Q ss_pred eeeeCcccEEEEccEEecCCceEEeCCCceeEEEEeeEEcCCc-e--EEEeecccCcCcccccCcEEEEEEEceEEeCC-
Q 047322 196 IHIQSSSGITISNSAIMTGDDCISVGPGTKNLWIERIACGPGH-G--IRMKKALAALGPMLLKMVLKNVTVTDSIFTGT- 271 (343)
Q Consensus 196 i~~~~s~nv~I~n~~i~~~dD~i~i~~~~~ni~i~n~~~~~~~-g--i~i~~~~gs~g~~~~~~~~~ni~i~n~~~~~~- 271 (343)
|.+. ++-+|+||++.+.||+|.+.. .++.|+||+++..+ | +.+ |.. ...++++.|+|+.+..+
T Consensus 376 i~ly--~nS~i~dcF~h~nDD~iKlYh--S~v~v~~~ViWk~~Ngpiiq~----GW~-----pr~isnv~veni~IIh~r 442 (582)
T PF03718_consen 376 IELY--PNSTIRDCFIHVNDDAIKLYH--SNVSVSNTVIWKNENGPIIQW----GWT-----PRNISNVSVENIDIIHNR 442 (582)
T ss_dssp -B----TT-EEEEEEEEESS-SEE--S--TTEEEEEEEEEE-SSS-SEE------CS--------EEEEEEEEEEEEE--
T ss_pred cccc--CCCeeeeeEEEecCchhheee--cCcceeeeEEEecCCCCeEEe----ecc-----ccccCceEEeeeEEEeee
Confidence 9986 577889999999999997763 59999999999753 3 444 432 35699999999999875
Q ss_pred --------ceEEEEEeecC----C-----CCceEEeEEEEeEEEecCC
Q 047322 272 --------QNGVRIKTWAR----P-----SNGFARNIRFRNIIMTKVF 302 (343)
Q Consensus 272 --------~~gi~i~~~~~----~-----~~g~i~nI~~~ni~~~~~~ 302 (343)
..+|.-.+..- + ..-.|++++|+|+++++.-
T Consensus 443 ~~~~~~~~n~~I~~ss~~y~~~~s~~~adp~~ti~~~~~~nv~~EG~~ 490 (582)
T PF03718_consen 443 WIWHNNYVNTAILGSSPFYDDMASTKTADPSTTIRNMTFSNVRCEGMC 490 (582)
T ss_dssp -SSGGCTTT-ECEEE--BTTS-SSS--BEEEEEEEEEEEEEEEEECCE
T ss_pred eecccCCCCceeEecccccccccCCCCCCcccceeeEEEEeEEEeccc
Confidence 23544433211 0 1125799999999999853
No 20
>COG5434 PGU1 Endopygalactorunase [Cell envelope biogenesis, outer membrane]
Probab=99.48 E-value=1.1e-12 Score=127.32 Aligned_cols=157 Identities=19% Similarity=0.263 Sum_probs=130.6
Q ss_pred CccEEEEeceecEEEEeEEEECCCCCCCCCeeeeeCcccEEEEccEEecCC----ceEEeCCCceeEEEEeeEEcCCc-e
Q 047322 165 RFFHIAIDECVNIMLRKLKINAPSWSPNTDGIHIQSSSGITISNSAIMTGD----DCISVGPGTKNLWIERIACGPGH-G 239 (343)
Q Consensus 165 ~~~~i~~~~~~~v~i~~~~i~~~~~~~~~DGi~~~~s~nv~I~n~~i~~~d----D~i~i~~~~~ni~i~n~~~~~~~-g 239 (343)
....+.+..|+||++++++|.++.. -++|+..|+|++++|.++.+.+ |++.+.+ ++|+.|++|+|..++ .
T Consensus 237 rp~~~~l~~c~NV~~~g~~i~ns~~----~~~h~~~~~nl~~~nl~I~~~~~~NtDG~d~~s-c~NvlI~~~~fdtgDD~ 311 (542)
T COG5434 237 RPRTVVLKGCRNVLLEGLNIKNSPL----WTVHPVDCDNLTFRNLTIDANRFDNTDGFDPGS-CSNVLIEGCRFDTGDDC 311 (542)
T ss_pred CCceEEEeccceEEEeeeEecCCCc----EEEeeecccCceecceEEECCCCCCCCcccccc-ceeEEEeccEEecCCce
Confidence 4467889999999999999998653 4699999999999999998754 5999986 899999999999875 6
Q ss_pred EEEeecccCcCcccccCcEEEEEEEceEEeCCceEEEEEeecCCCCceEEeEEEEeEEEecCCeeEEEEeeeCCCCCCCC
Q 047322 240 IRMKKALAALGPMLLKMVLKNVTVTDSIFTGTQNGVRIKTWARPSNGFARNIRFRNIIMTKVFNPIIIDQNYCPDNHCPH 319 (343)
Q Consensus 240 i~i~~~~gs~g~~~~~~~~~ni~i~n~~~~~~~~gi~i~~~~~~~~g~i~nI~~~ni~~~~~~~~i~i~~~~~~~~~~~~ 319 (343)
+.+|+|-+-.+.+ .....++|+|+||.|.....++.+.++ .+|.++||+++|+.+.+..++++|+...+
T Consensus 312 I~iksg~~~~~~~-~~~~~~~i~i~~c~~~~ghG~~v~Gse---~~ggv~ni~ved~~~~~~d~GLRikt~~~------- 380 (542)
T COG5434 312 IAIKSGAGLDGKK-GYGPSRNIVIRNCYFSSGHGGLVLGSE---MGGGVQNITVEDCVMDNTDRGLRIKTNDG------- 380 (542)
T ss_pred EEeecccCCcccc-cccccccEEEecceecccccceEeeee---cCCceeEEEEEeeeeccCcceeeeeeecc-------
Confidence 9998775544322 245689999999999988888888887 57899999999999999999999998643
Q ss_pred CCCceEEEeEEEEeEEEEec
Q 047322 320 QTSGVTISGVTYRNIKGTSA 339 (343)
Q Consensus 320 ~~~~~~i~~I~~~ni~~~~~ 339 (343)
.++.++||+|+++.+...
T Consensus 381 --~gG~v~nI~~~~~~~~nv 398 (542)
T COG5434 381 --RGGGVRNIVFEDNKMRNV 398 (542)
T ss_pred --cceeEEEEEEecccccCc
Confidence 347899999998876543
No 21
>TIGR03805 beta_helix_1 parallel beta-helix repeat-containing protein. Members of this protein family contain a tandem pair of beta-helix repeats (see TIGR03804). Each repeat is expected to consist of three beta strands that form a single turn as they form a right-handed helix of stacked beta-structure. Member proteinsa occur regularly in two-gene pairs along with another uncharacterized protein family; both protein families exhibit either lipoprotein or regular signal peptides, suggesting transit through the plasma membrane, and the two may be fused. The function of the pair is unknown.
Probab=99.14 E-value=1.8e-08 Score=93.51 Aligned_cols=163 Identities=19% Similarity=0.277 Sum_probs=123.8
Q ss_pred eeeEEEEc-c----eEeCCCCccccccCCCCCCCCCceEEEEEecCcEEEEeeEEecCCccEEEEeceecEEEEeEEEEC
Q 047322 112 VNRLSIHG-G----TIDATGAGYWACRKSGKSCPPPTRSISFVGASNIVVSGLTSINSRFFHIAIDECVNIMLRKLKINA 186 (343)
Q Consensus 112 ~~ni~I~G-G----~idg~g~~~w~~~~~~~~~~~~~~~i~~~~~~nv~i~~v~i~n~~~~~i~~~~~~~v~i~~~~i~~ 186 (343)
.++|+|+| | ++++.++. .....+ +..+++++|+++++.++..+++.+..|++++|+++++..
T Consensus 31 ~~~Iti~G~g~~~tvid~~~~~------------~~~~~i-~v~a~~VtI~~ltI~~~~~~GI~v~~s~~i~I~n~~i~~ 97 (314)
T TIGR03805 31 ADGVTIRGAGMDETILDFSGQV------------GGAEGL-LVTSDDVTLSDLAVENTKGDGVKVKGSDGIIIRRLRVEW 97 (314)
T ss_pred CCCeEEEecCCCccEEecccCC------------CCCceE-EEEeCCeEEEeeEEEcCCCCeEEEeCCCCEEEEeeEEEe
Confidence 46788888 5 36665541 112344 346899999999999999999999999999999999984
Q ss_pred CCC---CCCCCeeeeeCcccEEEEccEEecCC-ceEEeCCCceeEEEEeeEEcCCc-eEEEeecccCcCcccccCcEEEE
Q 047322 187 PSW---SPNTDGIHIQSSSGITISNSAIMTGD-DCISVGPGTKNLWIERIACGPGH-GIRMKKALAALGPMLLKMVLKNV 261 (343)
Q Consensus 187 ~~~---~~~~DGi~~~~s~nv~I~n~~i~~~d-D~i~i~~~~~ni~i~n~~~~~~~-gi~i~~~~gs~g~~~~~~~~~ni 261 (343)
... ....+||.+..|++++|++|.+.... ++|.++. +++++|+||+++... |+.+ . ...+.
T Consensus 98 ~~~~~~~~~~~GI~~~~s~~v~I~~n~i~g~~d~GIyv~~-s~~~~v~nN~~~~n~~GI~i----~---------~S~~~ 163 (314)
T TIGR03805 98 TGGPKSSNGAYGIYPVESTNVLVEDSYVRGASDAGIYVGQ-SQNIVVRNNVAEENVAGIEI----E---------NSQNA 163 (314)
T ss_pred ccCccccCCcceEEEeccCCEEEECCEEECCCcccEEECC-CCCeEEECCEEccCcceEEE----E---------ecCCc
Confidence 221 13568999999999999999998854 5899885 889999999998754 8887 1 23678
Q ss_pred EEEceEEeCCceEEEEEeecCCCCceEEeEEEEeEEEecC
Q 047322 262 TVTDSIFTGTQNGVRIKTWARPSNGFARNIRFRNIIMTKV 301 (343)
Q Consensus 262 ~i~n~~~~~~~~gi~i~~~~~~~~g~i~nI~~~ni~~~~~ 301 (343)
.|+|+++.+...|+.+-..++.....-+++++++.++.+.
T Consensus 164 ~v~~N~~~~N~~Gi~v~~~p~~~~~~s~~~~v~~N~i~~n 203 (314)
T TIGR03805 164 DVYNNIATNNTGGILVFDLPGLPQPGGSNVRVFDNIIFDN 203 (314)
T ss_pred EEECCEEeccceeEEEeecCCCCcCCccceEEECCEEECC
Confidence 9999999998889988655432223346777777777543
No 22
>PF12541 DUF3737: Protein of unknown function (DUF3737) ; InterPro: IPR022208 This family of proteins is found in bacteria, archaea and eukaryotes. Proteins in this family are typically between 281 and 297 amino acids in length.
Probab=99.08 E-value=1.2e-09 Score=95.51 Aligned_cols=99 Identities=15% Similarity=0.231 Sum_probs=57.1
Q ss_pred EEecCcEEEEeeEEecCCccEEEEeceecEEEEeEEEECCCCCCCCCeeeeeCcccEEEEccEEecCCceEEeCCCceeE
Q 047322 148 FVGASNIVVSGLTSINSRFFHIAIDECVNIMLRKLKINAPSWSPNTDGIHIQSSSGITISNSAIMTGDDCISVGPGTKNL 227 (343)
Q Consensus 148 ~~~~~nv~i~~v~i~n~~~~~i~~~~~~~v~i~~~~i~~~~~~~~~DGi~~~~s~nv~I~n~~i~~~dD~i~i~~~~~ni 227 (343)
+++++|+.++++.+..- ..|+.|+||.|+|.++.+.+. +|.|+||+|.|+++..- -++. .++|+
T Consensus 133 ~m~s~ni~id~l~~~Gn----Y~Fq~~kNvei~ns~l~sKDA--------FWn~eNVtVyDS~i~GE--YLgW--~SkNl 196 (277)
T PF12541_consen 133 FMNSENIYIDNLVLDGN----YSFQYCKNVEIHNSKLDSKDA--------FWNCENVTVYDSVINGE--YLGW--NSKNL 196 (277)
T ss_pred eeeccceEEeceEEeCC----EEeeceeeEEEEccEEecccc--------cccCCceEEEcceEeee--EEEE--EcCCe
Confidence 34455555555555322 345666666666666665432 35666666666666542 1222 35677
Q ss_pred EEEeeEEcCCceEEEeecccCcCcccccCcEEEEEEEceEEeCCceEEEE
Q 047322 228 WIERIACGPGHGIRMKKALAALGPMLLKMVLKNVTVTDSIFTGTQNGVRI 277 (343)
Q Consensus 228 ~i~n~~~~~~~gi~i~~~~gs~g~~~~~~~~~ni~i~n~~~~~~~~gi~i 277 (343)
++.||++.+.+|+.. ++|++.+||+|.+++.++.-
T Consensus 197 tliNC~I~g~QpLCY---------------~~~L~l~nC~~~~tdlaFEy 231 (277)
T PF12541_consen 197 TLINCTIEGTQPLCY---------------CDNLVLENCTMIDTDLAFEY 231 (277)
T ss_pred EEEEeEEeccCccEe---------------ecceEEeCcEeecceeeeee
Confidence 777777766666543 56777777777766554433
No 23
>PF13229 Beta_helix: Right handed beta helix region; PDB: 2INV_C 2INU_C 1RU4_A.
Probab=98.81 E-value=7.5e-08 Score=79.69 Aligned_cols=138 Identities=25% Similarity=0.301 Sum_probs=98.2
Q ss_pred EEEEecCcEEEEeeEEecCCccEEEEeceecEEEEeEEEECCCCCCCCCeeeeeCcccEEEEccEEecCCceEEeCCCce
Q 047322 146 ISFVGASNIVVSGLTSINSRFFHIAIDECVNIMLRKLKINAPSWSPNTDGIHIQSSSGITISNSAIMTGDDCISVGPGTK 225 (343)
Q Consensus 146 i~~~~~~nv~i~~v~i~n~~~~~i~~~~~~~v~i~~~~i~~~~~~~~~DGi~~~~s~nv~I~n~~i~~~dD~i~i~~~~~ 225 (343)
|.+....+++|++++|.+...+++.+..+..++|++++|.. ...|+++....++.+++|.+.....++.+. .+.
T Consensus 3 i~i~~~~~~~i~~~~i~~~~~~gi~~~~~~~~~i~n~~i~~-----~~~gi~~~~~~~~~i~~~~~~~~~~~i~~~-~~~ 76 (158)
T PF13229_consen 3 ISINNGSNVTIRNCTISNNGGDGIHVSGSSNITIENCTISN-----GGYGIYVSGGSNVTISNNTISDNGSGIYVS-GSS 76 (158)
T ss_dssp EEETTCEC-EEESEEEESSSSECEEE-SSCESEEES-EEES-----STTSEEEECCES-EEES-EEES-SEEEECC-S-C
T ss_pred EEEECCcCeEEeeeEEEeCCCeEEEEEcCCCeEEECeEEEC-----CCcEEEEecCCCeEEECeEEEEccceEEEE-ecC
Confidence 66777888999999999999999999999999999999997 446899988899999999999877777777 578
Q ss_pred eEEEEeeEEcCCc--eEEEeecccCcCcccccCcEEEEEEEceEEeCCc-eEEEEEeecCCCCceEEeEEEEeEEEecCC
Q 047322 226 NLWIERIACGPGH--GIRMKKALAALGPMLLKMVLKNVTVTDSIFTGTQ-NGVRIKTWARPSNGFARNIRFRNIIMTKVF 302 (343)
Q Consensus 226 ni~i~n~~~~~~~--gi~i~~~~gs~g~~~~~~~~~ni~i~n~~~~~~~-~gi~i~~~~~~~~g~i~nI~~~ni~~~~~~ 302 (343)
.++|++|.+.... |+.+ .. ..++++|++++|.+.. .|+.+.... -.+++++++++.+..
T Consensus 77 ~~~i~~~~i~~~~~~gi~~----~~--------~~~~~~i~~n~~~~~~~~gi~~~~~~------~~~~~i~~n~i~~~~ 138 (158)
T PF13229_consen 77 NITIENNRIENNGDYGIYI----SN--------SSSNVTIENNTIHNNGGSGIYLEGGS------SPNVTIENNTISNNG 138 (158)
T ss_dssp S-EEES-EEECSSS-SCE-----TC--------EECS-EEES-EEECCTTSSCEEEECC--------S-EEECEEEECES
T ss_pred CceecCcEEEcCCCccEEE----ec--------cCCCEEEEeEEEEeCcceeEEEECCC------CCeEEEEEEEEEeCc
Confidence 9999999998643 6777 21 2567999999999976 788887542 246778888887765
Q ss_pred -eeEEE
Q 047322 303 -NPIII 307 (343)
Q Consensus 303 -~~i~i 307 (343)
.++++
T Consensus 139 ~~gi~~ 144 (158)
T PF13229_consen 139 GNGIYL 144 (158)
T ss_dssp SEEEE-
T ss_pred ceeEEE
Confidence 56654
No 24
>COG3420 NosD Nitrous oxidase accessory protein [Inorganic ion transport and metabolism]
Probab=98.77 E-value=2.5e-06 Score=77.24 Aligned_cols=118 Identities=15% Similarity=0.156 Sum_probs=86.2
Q ss_pred cceEEEEeeeeEEEEcceEeCCCCccccccCCCCCCCCCceEEEEEecCcEEEEeeEEecCCccEEEEeceecEEEEeEE
Q 047322 104 GFWILFYKVNRLSIHGGTIDATGAGYWACRKSGKSCPPPTRSISFVGASNIVVSGLTSINSRFFHIAIDECVNIMLRKLK 183 (343)
Q Consensus 104 ~~~i~~~~~~ni~I~GG~idg~g~~~w~~~~~~~~~~~~~~~i~~~~~~nv~i~~v~i~n~~~~~i~~~~~~~v~i~~~~ 183 (343)
+..+... .+++.|+|-+..+.|.... ......+.-..+..-.|+...+... .+|+.+..+.++.+++.+
T Consensus 69 G~~vtv~-aP~~~v~Gl~vr~sg~~lp---------~m~agI~v~~~at~A~Vr~N~l~~n-~~Gi~l~~s~d~~i~~n~ 137 (408)
T COG3420 69 GSYVTVA-APDVIVEGLTVRGSGRSLP---------AMDAGIFVGRTATGAVVRHNDLIGN-SFGIYLHGSADVRIEGNT 137 (408)
T ss_pred ccEEEEe-CCCceeeeEEEecCCCCcc---------cccceEEeccCcccceEEccccccc-ceEEEEeccCceEEEeeE
Confidence 4556665 7889999977766665221 1122345555677788888887764 589999999999999999
Q ss_pred EECCCC---CCCCCeeeeeCcccEEEEccEEecCCceEEeCCCceeEEEEeeE
Q 047322 184 INAPSW---SPNTDGIHIQSSSGITISNSAIMTGDDCISVGPGTKNLWIERIA 233 (343)
Q Consensus 184 i~~~~~---~~~~DGi~~~~s~nv~I~n~~i~~~dD~i~i~~~~~ni~i~n~~ 233 (343)
|....+ ....+||+++++++++|..+.+.-+.|||.... ++.-.|+++.
T Consensus 138 i~G~~~~r~~~rGnGI~vyNa~~a~V~~ndisy~rDgIy~~~-S~~~~~~gnr 189 (408)
T COG3420 138 IQGLADLRVAERGNGIYVYNAPGALVVGNDISYGRDGIYSDT-SQHNVFKGNR 189 (408)
T ss_pred EeeccccchhhccCceEEEcCCCcEEEcCccccccceEEEcc-cccceecccc
Confidence 997443 236789999999999999999999999998876 4444444443
No 25
>PF12541 DUF3737: Protein of unknown function (DUF3737) ; InterPro: IPR022208 This family of proteins is found in bacteria, archaea and eukaryotes. Proteins in this family are typically between 281 and 297 amino acids in length.
Probab=98.73 E-value=9e-08 Score=83.90 Aligned_cols=123 Identities=20% Similarity=0.231 Sum_probs=85.1
Q ss_pred EEEecCcEEEEeeEEecCCccEEEEeceecEEEEeEEEECCCCCC-----CCCee------eeeCcccEEEEccEEecCC
Q 047322 147 SFVGASNIVVSGLTSINSRFFHIAIDECVNIMLRKLKINAPSWSP-----NTDGI------HIQSSSGITISNSAIMTGD 215 (343)
Q Consensus 147 ~~~~~~nv~i~~v~i~n~~~~~i~~~~~~~v~i~~~~i~~~~~~~-----~~DGi------~~~~s~nv~I~n~~i~~~d 215 (343)
.|+.|++++++++++.+++-. ++.|++|+++|+.+.+....- .-|++ .+++++||.|+|+.+.+.|
T Consensus 93 ~fR~~~~i~L~nv~~~~A~Et---~W~c~~i~l~nv~~~gdYf~m~s~ni~id~l~~~GnY~Fq~~kNvei~ns~l~sKD 169 (277)
T PF12541_consen 93 MFRECSNITLENVDIPDADET---LWNCRGIKLKNVQANGDYFFMNSENIYIDNLVLDGNYSFQYCKNVEIHNSKLDSKD 169 (277)
T ss_pred HhhcccCcEEEeeEeCCCccc---CEEeCCeEEEeEEEeceEeeeeccceEEeceEEeCCEEeeceeeEEEEccEEeccc
Confidence 355788888888888776543 456777777777775421110 12233 3456899999999999876
Q ss_pred ceEEeCCCceeEEEEeeEEcCCceEEEeecccCcCcccccCcEEEEEEEceEEeCCceEEEEEeecCCCCceEEeEEEEe
Q 047322 216 DCISVGPGTKNLWIERIACGPGHGIRMKKALAALGPMLLKMVLKNVTVTDSIFTGTQNGVRIKTWARPSNGFARNIRFRN 295 (343)
Q Consensus 216 D~i~i~~~~~ni~i~n~~~~~~~gi~i~~~~gs~g~~~~~~~~~ni~i~n~~~~~~~~gi~i~~~~~~~~g~i~nI~~~n 295 (343)
+ ++ +++||+|.++++.+ =.+ |. ..+|+++.||++.+.+ +--+++|++++|
T Consensus 170 -A--FW-n~eNVtVyDS~i~G---EYL-------gW-----~SkNltliNC~I~g~Q-----------pLCY~~~L~l~n 219 (277)
T PF12541_consen 170 -A--FW-NCENVTVYDSVING---EYL-------GW-----NSKNLTLINCTIEGTQ-----------PLCYCDNLVLEN 219 (277)
T ss_pred -c--cc-cCCceEEEcceEee---eEE-------EE-----EcCCeEEEEeEEeccC-----------ccEeecceEEeC
Confidence 3 44 48999999998853 222 21 2489999999998662 245678999999
Q ss_pred EEEecCC
Q 047322 296 IIMTKVF 302 (343)
Q Consensus 296 i~~~~~~ 302 (343)
+++.++.
T Consensus 220 C~~~~td 226 (277)
T PF12541_consen 220 CTMIDTD 226 (277)
T ss_pred cEeecce
Confidence 9998765
No 26
>TIGR03808 RR_plus_rpt_1 twin-arg-translocated uncharacterized repeat protein. Members of this protein family have a Sec-independent twin-arginine tranlocation (TAT) signal sequence, which enables tranfer of proteins folded around prosthetic groups to cross the plasma membrane. These proteins have four copies of a repeat of about 23 amino acids that resembles the beta-helix repeat. Beta-helix refers to a structural motif in which successive beta strands wind around to stack parallel in a right-handed helix, as in AlgG and related enzymes of carbohydrate metabolism. The twin-arginine motif suggests that members of this protein family bind some unknown cofactor.
Probab=98.73 E-value=8.4e-07 Score=84.18 Aligned_cols=150 Identities=20% Similarity=0.162 Sum_probs=99.5
Q ss_pred eEEEEEecCcEEEEeeEEecCC------ccEEEEeceecEEEEeEEEECCCCCCCCCeeeeeCcccEEEEccEEe-cCCc
Q 047322 144 RSISFVGASNIVVSGLTSINSR------FFHIAIDECVNIMLRKLKINAPSWSPNTDGIHIQSSSGITISNSAIM-TGDD 216 (343)
Q Consensus 144 ~~i~~~~~~nv~i~~v~i~n~~------~~~i~~~~~~~v~i~~~~i~~~~~~~~~DGi~~~~s~nv~I~n~~i~-~~dD 216 (343)
.++.-..+++++|++++|.++. ..++.+..|++++|+++++.+.. .-||++..|+ ..|.++.+. ..+.
T Consensus 107 ~lIiai~A~nVTIsGLtIdGsG~dl~~rdAgI~v~~a~~v~Iedn~L~gsg----~FGI~L~~~~-~~I~~N~I~g~~~~ 181 (455)
T TIGR03808 107 SLLSSEGADGIGLSGLTLDGGGIPLPQRRGLIHCQGGRDVRITDCEITGSG----GNGIWLETVS-GDISGNTITQIAVT 181 (455)
T ss_pred eEEEEecCCCeEEEeeEEEeCCCcccCCCCEEEEccCCceEEEeeEEEcCC----cceEEEEcCc-ceEecceEeccccc
Confidence 3565667999999999999764 35789999999999999999852 2468888777 555555543 3455
Q ss_pred eEEeCCCceeEEEEeeEEcCC--ceEEEeec--------------------ccCcCcccc---cCcEEEEEEEceEEeCC
Q 047322 217 CISVGPGTKNLWIERIACGPG--HGIRMKKA--------------------LAALGPMLL---KMVLKNVTVTDSIFTGT 271 (343)
Q Consensus 217 ~i~i~~~~~ni~i~n~~~~~~--~gi~i~~~--------------------~gs~g~~~~---~~~~~ni~i~n~~~~~~ 271 (343)
.|.++. ++++.|+++++... .||.+..- -|-.++.+. --...+++|+++++.++
T Consensus 182 ~I~lw~-S~g~~V~~N~I~g~RD~gi~i~r~~~~~dg~~v~~n~i~~i~a~~gg~~~~GNGI~~~~a~~v~V~gN~I~~~ 260 (455)
T TIGR03808 182 AIVSFD-ALGLIVARNTIIGANDNGIEILRSAIGDDGTIVTDNRIEDIKAGPGGSGQYGNAINAFRAGNVIVRGNRIRNC 260 (455)
T ss_pred eEEEec-cCCCEEECCEEEccCCCCeEEEEeeecCCcceeeccccccccccCCCcCCccccEEEEccCCeEEECCEEecc
Confidence 565553 66777777777653 24444100 000011110 01246789999999998
Q ss_pred c-eEEEEEeecCCCCceEEeEEEEeEEEecCCe-eEEE
Q 047322 272 Q-NGVRIKTWARPSNGFARNIRFRNIIMTKVFN-PIII 307 (343)
Q Consensus 272 ~-~gi~i~~~~~~~~g~i~nI~~~ni~~~~~~~-~i~i 307 (343)
. .|+++.+. +|+.|++.+++++.+ +++.
T Consensus 261 r~dgI~~nss--------s~~~i~~N~~~~~R~~alhy 290 (455)
T TIGR03808 261 DYSAVRGNSA--------SNIQITGNSVSDVREVALYS 290 (455)
T ss_pred ccceEEEEcc--------cCcEEECcEeeeeeeeEEEE
Confidence 8 89998864 567777777777766 6543
No 27
>PF13229 Beta_helix: Right handed beta helix region; PDB: 2INV_C 2INU_C 1RU4_A.
Probab=98.64 E-value=5.2e-07 Score=74.59 Aligned_cols=139 Identities=25% Similarity=0.329 Sum_probs=94.6
Q ss_pred EEEeeeeEEEEcceEeCCCCccccccCCCCCCCCCceEEEEEecCcEEEEeeEEecCCccEEEEeceecEEEEeEEEECC
Q 047322 108 LFYKVNRLSIHGGTIDATGAGYWACRKSGKSCPPPTRSISFVGASNIVVSGLTSINSRFFHIAIDECVNIMLRKLKINAP 187 (343)
Q Consensus 108 ~~~~~~ni~I~GG~idg~g~~~w~~~~~~~~~~~~~~~i~~~~~~nv~i~~v~i~n~~~~~i~~~~~~~v~i~~~~i~~~ 187 (343)
.+.+..+++|++.++...+ ...+.+..+..++|++.+|.+ ...++.+....++.++++.+...
T Consensus 4 ~i~~~~~~~i~~~~i~~~~----------------~~gi~~~~~~~~~i~n~~i~~-~~~gi~~~~~~~~~i~~~~~~~~ 66 (158)
T PF13229_consen 4 SINNGSNVTIRNCTISNNG----------------GDGIHVSGSSNITIENCTISN-GGYGIYVSGGSNVTISNNTISDN 66 (158)
T ss_dssp EETTCEC-EEESEEEESSS----------------SECEEE-SSCESEEES-EEES-STTSEEEECCES-EEES-EEES-
T ss_pred EEECCcCeEEeeeEEEeCC----------------CeEEEEEcCCCeEEECeEEEC-CCcEEEEecCCCeEEECeEEEEc
Confidence 3444566777776654432 346888888889999999999 77899999999999999999974
Q ss_pred CCCCCCCeeeeeCcccEEEEccEEecCCc-eEEeCCCceeEEEEeeEEcCC--ceEEEeecccCcCcccccCcEEEEEEE
Q 047322 188 SWSPNTDGIHIQSSSGITISNSAIMTGDD-CISVGPGTKNLWIERIACGPG--HGIRMKKALAALGPMLLKMVLKNVTVT 264 (343)
Q Consensus 188 ~~~~~~DGi~~~~s~nv~I~n~~i~~~dD-~i~i~~~~~ni~i~n~~~~~~--~gi~i~~~~gs~g~~~~~~~~~ni~i~ 264 (343)
. .|+.+..+.+++|++|.+....+ +|.+...+.+++|++|++... .|+.+ .. ..-.++.|+
T Consensus 67 ~-----~~i~~~~~~~~~i~~~~i~~~~~~gi~~~~~~~~~~i~~n~~~~~~~~gi~~----~~-------~~~~~~~i~ 130 (158)
T PF13229_consen 67 G-----SGIYVSGSSNITIENNRIENNGDYGIYISNSSSNVTIENNTIHNNGGSGIYL----EG-------GSSPNVTIE 130 (158)
T ss_dssp S-----EEEECCS-CS-EEES-EEECSSS-SCE-TCEECS-EEES-EEECCTTSSCEE----EE-------CC--S-EEE
T ss_pred c-----ceEEEEecCCceecCcEEEcCCCccEEEeccCCCEEEEeEEEEeCcceeEEE----EC-------CCCCeEEEE
Confidence 2 68888889999999999987555 898873267999999999864 57777 11 123588999
Q ss_pred ceEEeCCc-eEEEEEe
Q 047322 265 DSIFTGTQ-NGVRIKT 279 (343)
Q Consensus 265 n~~~~~~~-~gi~i~~ 279 (343)
++++.+.. .|+.+..
T Consensus 131 ~n~i~~~~~~gi~~~~ 146 (158)
T PF13229_consen 131 NNTISNNGGNGIYLIS 146 (158)
T ss_dssp CEEEECESSEEEE-TT
T ss_pred EEEEEeCcceeEEEEC
Confidence 99999865 7777753
No 28
>PF07602 DUF1565: Protein of unknown function (DUF1565); InterPro: IPR011459 These proteins share a region of homology in their N termini, and are found in several phylogenetically diverse bacteria and in the archaeon Methanosarcina acetivorans. Some of these proteins also contain characterised domains such as IPR001119 from INTERPRO (e.g. Q8YWJ6 from SWISSPROT) and IPR005084 from INTERPRO (e.g. Q9FBS2 from SWISSPROT).
Probab=98.62 E-value=3.1e-06 Score=75.09 Aligned_cols=167 Identities=18% Similarity=0.252 Sum_probs=98.7
Q ss_pred HHHHHHHHHhhhcCCCcEEEEcCcEEEEE-----eEEecCCCcccEEEEEeeEEEecCCcCCcCCCcceEEEEeeeeEEE
Q 047322 43 QAFLRAWSSACYSNSPATLHVPRGLFLVK-----SISFNGPCRHRIVFQIDGTIIAPSSYWSLGNSGFWILFYKVNRLSI 117 (343)
Q Consensus 43 ~Aiq~Ai~~a~~~~~g~~V~ip~G~Y~~~-----~l~l~~~~ks~~~l~~~g~l~~~~~~~~~~~~~~~i~~~~~~ni~I 117 (343)
.-|++|++.| ..|.+|++.||+|.-. ||.+ |+.++|..+..-+. ..++.+
T Consensus 16 ~Ti~~A~~~a---~~g~~i~l~~GtY~~~~ge~fPi~i----~~gVtl~G~~~~kG------------------~~~il~ 70 (246)
T PF07602_consen 16 KTITKALQAA---QPGDTIQLAPGTYSEATGETFPIII----KPGVTLIGNESNKG------------------QIDILI 70 (246)
T ss_pred HHHHHHHHhC---CCCCEEEECCceeccccCCcccEEe----cCCeEEeecccCCC------------------cceEEe
Confidence 3799999765 5688999999999743 4666 56777766532111 012333
Q ss_pred Ec-c---eEeCCCCccccccCCCCCCCCCceEEEEEecCcEEEEeeEEecC---CccEEEEeceecEEEEeEEEECCCCC
Q 047322 118 HG-G---TIDATGAGYWACRKSGKSCPPPTRSISFVGASNIVVSGLTSINS---RFFHIAIDECVNIMLRKLKINAPSWS 190 (343)
Q Consensus 118 ~G-G---~idg~g~~~w~~~~~~~~~~~~~~~i~~~~~~nv~i~~v~i~n~---~~~~i~~~~~~~v~i~~~~i~~~~~~ 190 (343)
.| + +|+|.+.. .. ...+.+...++.+|++++|.|+ ...++++..+ +.+|+|++|...
T Consensus 71 ~g~~~~~~I~g~~~~----------~~--~qn~tI~~~~~~~i~GvtItN~n~~~g~Gi~Iess-~~tI~Nntf~~~--- 134 (246)
T PF07602_consen 71 TGGGTGPTISGGGPD----------LS--GQNVTIILANNATISGVTITNPNIARGTGIWIESS-SPTIANNTFTNN--- 134 (246)
T ss_pred cCCceEEeEeccCcc----------cc--ceeEEEEecCCCEEEEEEEEcCCCCcceEEEEecC-CcEEEeeEEECC---
Confidence 33 1 23333320 01 2345566678889999999887 3456777666 778888888762
Q ss_pred CCCCeeeeeCcccEEEEccEEecCCceEEeCCCceeEEEEeeEEcC-CceEEEeecccCcCcccccCcEEEEEEEceEEe
Q 047322 191 PNTDGIHIQSSSGITISNSAIMTGDDCISVGPGTKNLWIERIACGP-GHGIRMKKALAALGPMLLKMVLKNVTVTDSIFT 269 (343)
Q Consensus 191 ~~~DGi~~~~s~nv~I~n~~i~~~dD~i~i~~~~~ni~i~n~~~~~-~~gi~i~~~~gs~g~~~~~~~~~ni~i~n~~~~ 269 (343)
..+||.+.+. ..+....++.|+++.++. ..|+++ ... ..++. ..++|+.+.
T Consensus 135 -~~~GI~v~g~-----------------~~~~~i~~~vI~GN~~~~~~~Gi~i----~~~-----~~~~~-n~I~NN~I~ 186 (246)
T PF07602_consen 135 -GREGIFVTGT-----------------SANPGINGNVISGNSIYFNKTGISI----SDN-----AAPVE-NKIENNIIE 186 (246)
T ss_pred -ccccEEEEee-----------------ecCCcccceEeecceEEecCcCeEE----Ecc-----cCCcc-ceeeccEEE
Confidence 3456544221 112234556677777764 458877 211 12223 355888888
Q ss_pred CCceEEEEE
Q 047322 270 GTQNGVRIK 278 (343)
Q Consensus 270 ~~~~gi~i~ 278 (343)
+...||.+.
T Consensus 187 ~N~~Gi~~~ 195 (246)
T PF07602_consen 187 NNNIGIVAI 195 (246)
T ss_pred eCCcCeEee
Confidence 776687754
No 29
>PF03718 Glyco_hydro_49: Glycosyl hydrolase family 49; InterPro: IPR005192 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is a family of dextranase (3.2.1.11 from EC) and isopullulanase (3.2.1.57 from EC) which are all members of glycoside hydrolase family 49 (GH49 from CAZY). Dextranase hydrolyses alpha-1,6-glycosidic bonds in dextran polymers.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds; PDB: 1X0C_A 1WMR_A 2Z8G_B 1OGM_X 1OGO_X.
Probab=98.57 E-value=1.4e-05 Score=76.87 Aligned_cols=213 Identities=16% Similarity=0.195 Sum_probs=114.7
Q ss_pred CCcEEEEcCcEEEEEeEEecCCCcccEEEEEeeEEEecCCc------CCcC----C---Cc---ceEEE---EeeeeEEE
Q 047322 57 SPATLHVPRGLFLVKSISFNGPCRHRIVFQIDGTIIAPSSY------WSLG----N---SG---FWILF---YKVNRLSI 117 (343)
Q Consensus 57 ~g~~V~ip~G~Y~~~~l~l~~~~ks~~~l~~~g~l~~~~~~------~~~~----~---~~---~~i~~---~~~~ni~I 117 (343)
....|||.||.|.-+.+.+... .+++.+...|+|....-. +.|. + +. .++.+ .+..+..+
T Consensus 255 n~~~VYlApGAyVkGAf~~~~~-~~nv~i~G~GVLSGe~Yvy~A~~~e~y~~~s~A~~~~~~~lkm~~~~~~~g~q~~~~ 333 (582)
T PF03718_consen 255 NTKWVYLAPGAYVKGAFEYTDT-QQNVKITGRGVLSGEQYVYEADTEESYLHLSGAVKCHRESLKMLWHISANGGQTLTC 333 (582)
T ss_dssp T--EEEE-TTEEEES-EEE----SSEEEEESSSEEE-TTS-TTBBCCCTTSB-SSC---TTTB--SEEECS-SSSEEEEE
T ss_pred CccEEEEcCCcEEEEEEEEccC-CceEEEEeeEEEcCcceeEeccCCCCccccccccccchhhhhhhhhhccCCcceEEE
Confidence 4579999999999888766522 478888888888753211 1121 0 00 12332 24567888
Q ss_pred EcceEeCCCCccccccCCCCCCCCCceEEEEEecC----cEEEEeeEEecCCc---cEEEEeceecEEEEeEEEECCCCC
Q 047322 118 HGGTIDATGAGYWACRKSGKSCPPPTRSISFVGAS----NIVVSGLTSINSRF---FHIAIDECVNIMLRKLKINAPSWS 190 (343)
Q Consensus 118 ~GG~idg~g~~~w~~~~~~~~~~~~~~~i~~~~~~----nv~i~~v~i~n~~~---~~i~~~~~~~v~i~~~~i~~~~~~ 190 (343)
.|-+|.... + +.+.+.+-+ +..|++.++..+.. +|+.+. .+-+|+||.++.
T Consensus 334 ~GiTI~~pP--~--------------~Sm~l~g~~~~~~~~~i~nyKqVGaW~~qtDGi~ly--~nS~i~dcF~h~---- 391 (582)
T PF03718_consen 334 EGITINDPP--F--------------HSMDLYGNENDKFSMNISNYKQVGAWYFQTDGIELY--PNSTIRDCFIHV---- 391 (582)
T ss_dssp ES-EEE--S--S---------------SEEEESSSGGGEEEEEEEEEEE---CTT----B----TT-EEEEEEEEE----
T ss_pred EeeEecCCC--c--------------ceEEecCCccccccceeeceeeeeeEEeccCCcccc--CCCeeeeeEEEe----
Confidence 886664321 1 235555444 47889999887654 355554 677899999997
Q ss_pred CCCCeeeeeCcccEEEEccEEecCCce--EEeCC---CceeEEEEeeEEcC----------CceEEEeeccc---CcCcc
Q 047322 191 PNTDGIHIQSSSGITISNSAIMTGDDC--ISVGP---GTKNLWIERIACGP----------GHGIRMKKALA---ALGPM 252 (343)
Q Consensus 191 ~~~DGi~~~~s~nv~I~n~~i~~~dD~--i~i~~---~~~ni~i~n~~~~~----------~~gi~i~~~~g---s~g~~ 252 (343)
+.|+|.+.. +++.|++|++...+.+ |-++- ..+||.|+|+.+-. ..+|.-..-.. +.+..
T Consensus 392 -nDD~iKlYh-S~v~v~~~ViWk~~Ngpiiq~GW~pr~isnv~veni~IIh~r~~~~~~~~n~~I~~ss~~y~~~~s~~~ 469 (582)
T PF03718_consen 392 -NDDAIKLYH-SNVSVSNTVIWKNENGPIIQWGWTPRNISNVSVENIDIIHNRWIWHNNYVNTAILGSSPFYDDMASTKT 469 (582)
T ss_dssp -SS-SEE--S-TTEEEEEEEEEE-SSS-SEE--CS---EEEEEEEEEEEEE---SSGGCTTT-ECEEE--BTTS-SSS--
T ss_pred -cCchhheee-cCcceeeeEEEecCCCCeEEeeccccccCceEEeeeEEEeeeeecccCCCCceeEecccccccccCCCC
Confidence 447898877 7999999999764332 33322 24788888887521 22433210000 00001
Q ss_pred c-ccCcEEEEEEEceEEeCCce-EEEEEeecCCCCceEEeEEEEeEEEe
Q 047322 253 L-LKMVLKNVTVTDSIFTGTQN-GVRIKTWARPSNGFARNIRFRNIIMT 299 (343)
Q Consensus 253 ~-~~~~~~ni~i~n~~~~~~~~-gi~i~~~~~~~~g~i~nI~~~ni~~~ 299 (343)
. ....+++++|+|+++++... -++|. ....-.|+.++|+.++
T Consensus 470 adp~~ti~~~~~~nv~~EG~~~~l~ri~-----plqn~~nl~ikN~~~~ 513 (582)
T PF03718_consen 470 ADPSTTIRNMTFSNVRCEGMCPCLFRIY-----PLQNYDNLVIKNVHFE 513 (582)
T ss_dssp BEEEEEEEEEEEEEEEEECCE-ECEEE-------SEEEEEEEEEEEEEC
T ss_pred CCcccceeeEEEEeEEEecccceeEEEe-----ecCCCcceEEEEeecc
Confidence 1 12347899999999999644 45665 3455677888888887
No 30
>smart00656 Amb_all Amb_all domain.
Probab=98.56 E-value=6.7e-06 Score=70.84 Aligned_cols=142 Identities=18% Similarity=0.181 Sum_probs=90.6
Q ss_pred EEEEeceecEEEEeEEEECCCC--CCCCCeeeeeCcccEEEEccEEecC----------CceEEeCCCceeEEEEeeEEc
Q 047322 168 HIAIDECVNIMLRKLKINAPSW--SPNTDGIHIQSSSGITISNSAIMTG----------DDCISVGPGTKNLWIERIACG 235 (343)
Q Consensus 168 ~i~~~~~~~v~i~~~~i~~~~~--~~~~DGi~~~~s~nv~I~n~~i~~~----------dD~i~i~~~~~ni~i~n~~~~ 235 (343)
++.+..++||.|+|++|+.... .+..|+|.+.++++|+|++|.+..+ |..+.++.++.+++|++|.|.
T Consensus 33 gl~i~~~~NVIirnl~i~~~~~~~~~~~D~i~~~~~~~VwIDHct~s~~~~~~~~~~~~D~~~di~~~s~~vTvs~~~f~ 112 (190)
T smart00656 33 GLTIKSVSNVIIRNLTIHDPKPVYGSDGDAISIDGSSNVWIDHVSLSGCTVTGFGDDTYDGLIDIKNGSTYVTISNNYFH 112 (190)
T ss_pred EEEEEecceEEEeCCEEECCccCCCCCCCEEEEeCCCeEEEEccEeEcceeccCCCCCCCccEEECcccccEEEECceEe
Confidence 3444456677777777775322 2467999999999999999999886 445678888999999999997
Q ss_pred CCc-eEEEeecccCcCcccccCcEEEEEEEceEEeCCc-eEEEEEeecCCCCceEEeEEEEeEEEecCC-eeEEEEeeeC
Q 047322 236 PGH-GIRMKKALAALGPMLLKMVLKNVTVTDSIFTGTQ-NGVRIKTWARPSNGFARNIRFRNIIMTKVF-NPIIIDQNYC 312 (343)
Q Consensus 236 ~~~-gi~i~~~~gs~g~~~~~~~~~ni~i~n~~~~~~~-~gi~i~~~~~~~~g~i~nI~~~ni~~~~~~-~~i~i~~~~~ 312 (343)
.-+ +.-+ |+--.+ ......+|++.++.+.++. +.-+++ .| .+++-|....+.. +++...
T Consensus 113 ~h~~~~li----G~~d~~-~~~~~~~vT~h~N~~~~~~~R~P~~r------~g---~~hv~NN~~~n~~~~~~~~~---- 174 (190)
T smart00656 113 NHWKVMLL----GHSDSD-TDDGKMRVTIAHNYFGNLRQRAPRVR------FG---YVHVYNNYYTGWTSYAIGGR---- 174 (190)
T ss_pred cCCEEEEE----ccCCCc-cccccceEEEECcEEcCcccCCCccc------CC---EEEEEeeEEeCcccEeEecC----
Confidence 654 5666 552111 1112458999999987742 222222 12 4566666666543 333222
Q ss_pred CCCCCCCCCCceEEEeEEEEeE
Q 047322 313 PDNHCPHQTSGVTISGVTYRNI 334 (343)
Q Consensus 313 ~~~~~~~~~~~~~i~~I~~~ni 334 (343)
....+.+++-.|++.
T Consensus 175 -------~~~~v~~E~N~F~~~ 189 (190)
T smart00656 175 -------MGATILSEGNYFEAP 189 (190)
T ss_pred -------CCcEEEEECeEEECC
Confidence 123567777777653
No 31
>COG3866 PelB Pectate lyase [Carbohydrate transport and metabolism]
Probab=98.55 E-value=8.7e-06 Score=72.83 Aligned_cols=101 Identities=17% Similarity=0.186 Sum_probs=67.6
Q ss_pred cEEEEeceecEEEEeEEEECCC-CCCCCCeeee-eCcccEEEEccEEec---------CCceEEeCCCceeEEEEeeEEc
Q 047322 167 FHIAIDECVNIMLRKLKINAPS-WSPNTDGIHI-QSSSGITISNSAIMT---------GDDCISVGPGTKNLWIERIACG 235 (343)
Q Consensus 167 ~~i~~~~~~~v~i~~~~i~~~~-~~~~~DGi~~-~~s~nv~I~n~~i~~---------~dD~i~i~~~~~ni~i~n~~~~ 235 (343)
+++.+...+||.|+|+.|+... +-++-|+|.+ ..++|++|++|++.. +|-.+.++.++..|+|++|.|.
T Consensus 117 ~gl~i~~a~NVIirNltf~~~~~~d~~~D~Isi~~~~~nIWIDH~tf~~~s~~~~~~h~DGl~Dik~~AnyITiS~n~fh 196 (345)
T COG3866 117 GGLKIRDAGNVIIRNLTFEGFYQGDPNYDAISIYDDGHNIWIDHNTFSGGSYNASGSHGDGLVDIKKDANYITISYNKFH 196 (345)
T ss_pred ceEEEEeCCcEEEEeeEEEeeccCCCCCCcEEeccCCeEEEEEeeEeccccccccccCCCccEEeccCCcEEEEEeeeee
Confidence 4555555566666666665421 1123478888 567899999999876 3445788888999999999998
Q ss_pred CCc-eEEEeecccCcCcccccCcEEEEEEEceEEeCC
Q 047322 236 PGH-GIRMKKALAALGPMLLKMVLKNVTVTDSIFTGT 271 (343)
Q Consensus 236 ~~~-gi~i~~~~gs~g~~~~~~~~~ni~i~n~~~~~~ 271 (343)
... ++-+ |+.-.+.....-.+|++.+|.|.+.
T Consensus 197 dh~Kssl~----G~sD~~~~~~~~~kvT~hhNyFkn~ 229 (345)
T COG3866 197 DHDKSSLL----GSSDSSNYDDGKYKVTIHHNYFKNL 229 (345)
T ss_pred cCCeeeee----ccCCcccccCCceeEEEeccccccc
Confidence 765 5555 5532211123357799999999885
No 32
>PF05048 NosD: Periplasmic copper-binding protein (NosD); InterPro: IPR007742 Bacterial nitrous oxide (N(2)O) reductase is the terminal oxidoreductase of a respiratory process that generates dinitrogen from N(2)O. To attain its functional state, the enzyme is subjected to a maturation process which involves the protein-driven synthesis of a unique copper-sulphur cluster and metallation of the binuclear Cu(A) site in the periplasm. NosD is a periplasmic protein which is thought to insert copper into the exported reductase apoenzyme [].
Probab=98.52 E-value=5.8e-06 Score=73.79 Aligned_cols=114 Identities=23% Similarity=0.195 Sum_probs=88.3
Q ss_pred EEEEEecCcEEEEeeEEecCCccEEEEeceecEEEEeEEEECCCCCCCCCeeeeeCcccEEEEccEEecCCceEEeCCCc
Q 047322 145 SISFVGASNIVVSGLTSINSRFFHIAIDECVNIMLRKLKINAPSWSPNTDGIHIQSSSGITISNSAIMTGDDCISVGPGT 224 (343)
Q Consensus 145 ~i~~~~~~nv~i~~v~i~n~~~~~i~~~~~~~v~i~~~~i~~~~~~~~~DGi~~~~s~nv~I~n~~i~~~dD~i~i~~~~ 224 (343)
.+.+..+.+++|++.++.+. .+|+++..+++++|+++.+... ..||.+..+.+.+|+++.+.....+|.+.. +
T Consensus 37 gi~~~~s~~~~I~~n~i~~~-~~GI~~~~s~~~~i~~n~i~~n-----~~Gi~l~~s~~~~I~~N~i~~n~~GI~l~~-s 109 (236)
T PF05048_consen 37 GIYVENSDNNTISNNTISNN-RYGIHLMGSSNNTIENNTISNN-----GYGIYLMGSSNNTISNNTISNNGYGIYLYG-S 109 (236)
T ss_pred EEEEEEcCCeEEEeeEEECC-CeEEEEEccCCCEEEeEEEEcc-----CCCEEEEcCCCcEEECCEecCCCceEEEee-C
Confidence 45777888888998888887 7888888888888898888872 278888887777888888888777887775 5
Q ss_pred eeEEEEeeEEcCC-ceEEEeecccCcCcccccCcEEEEEEEceEEeCC-ceEEEEE
Q 047322 225 KNLWIERIACGPG-HGIRMKKALAALGPMLLKMVLKNVTVTDSIFTGT-QNGVRIK 278 (343)
Q Consensus 225 ~ni~i~n~~~~~~-~gi~i~~~~gs~g~~~~~~~~~ni~i~n~~~~~~-~~gi~i~ 278 (343)
.+.+|+++++... .||.+ .. ..+.+|++++|.+. ..|+.+.
T Consensus 110 ~~~~I~~N~i~~~~~GI~l----~~---------s~~n~I~~N~i~~n~~~Gi~~~ 152 (236)
T PF05048_consen 110 SNNTISNNTISNNGYGIYL----SS---------SSNNTITGNTISNNTDYGIYFL 152 (236)
T ss_pred CceEEECcEEeCCCEEEEE----Ee---------CCCCEEECeEEeCCCccceEEe
Confidence 6778888888643 47777 11 16778888888887 7788833
No 33
>PF05048 NosD: Periplasmic copper-binding protein (NosD); InterPro: IPR007742 Bacterial nitrous oxide (N(2)O) reductase is the terminal oxidoreductase of a respiratory process that generates dinitrogen from N(2)O. To attain its functional state, the enzyme is subjected to a maturation process which involves the protein-driven synthesis of a unique copper-sulphur cluster and metallation of the binuclear Cu(A) site in the periplasm. NosD is a periplasmic protein which is thought to insert copper into the exported reductase apoenzyme [].
Probab=98.49 E-value=5.1e-06 Score=74.16 Aligned_cols=135 Identities=21% Similarity=0.162 Sum_probs=109.9
Q ss_pred eEEEEEecCcEEEEeeEEecCCccEEEEeceecEEEEeEEEECCCCCCCCCeeeeeCcccEEEEccEEecCCceEEeCCC
Q 047322 144 RSISFVGASNIVVSGLTSINSRFFHIAIDECVNIMLRKLKINAPSWSPNTDGIHIQSSSGITISNSAIMTGDDCISVGPG 223 (343)
Q Consensus 144 ~~i~~~~~~nv~i~~v~i~n~~~~~i~~~~~~~v~i~~~~i~~~~~~~~~DGi~~~~s~nv~I~n~~i~~~dD~i~i~~~ 223 (343)
..+.+.++++..|++.++.+. ..++.+..+.+++|+++++.. ...||++..+++++|+++.+.....+|.+..
T Consensus 14 ~Gi~l~~~~~~~i~~n~i~~~-~~gi~~~~s~~~~I~~n~i~~-----~~~GI~~~~s~~~~i~~n~i~~n~~Gi~l~~- 86 (236)
T PF05048_consen 14 NGIYLWNSSNNSIENNTISNS-RDGIYVENSDNNTISNNTISN-----NRYGIHLMGSSNNTIENNTISNNGYGIYLMG- 86 (236)
T ss_pred CcEEEEeCCCCEEEcCEEEeC-CCEEEEEEcCCeEEEeeEEEC-----CCeEEEEEccCCCEEEeEEEEccCCCEEEEc-
Confidence 357888899999999999775 578899999999999999997 3679999999999999999999889999987
Q ss_pred ceeEEEEeeEEcCC-ceEEEeecccCcCcccccCcEEEEEEEceEEeCCceEEEEEeecCCCCceEEeEEEEeEEEecC-
Q 047322 224 TKNLWIERIACGPG-HGIRMKKALAALGPMLLKMVLKNVTVTDSIFTGTQNGVRIKTWARPSNGFARNIRFRNIIMTKV- 301 (343)
Q Consensus 224 ~~ni~i~n~~~~~~-~gi~i~~~~gs~g~~~~~~~~~ni~i~n~~~~~~~~gi~i~~~~~~~~g~i~nI~~~ni~~~~~- 301 (343)
+.+.+|+++++... .||.+ . ...+.+|+++++.+...||.+... .+.++++.++.+.
T Consensus 87 s~~~~I~~N~i~~n~~GI~l----~---------~s~~~~I~~N~i~~~~~GI~l~~s--------~~n~I~~N~i~~n~ 145 (236)
T PF05048_consen 87 SSNNTISNNTISNNGYGIYL----Y---------GSSNNTISNNTISNNGYGIYLSSS--------SNNTITGNTISNNT 145 (236)
T ss_pred CCCcEEECCEecCCCceEEE----e---------eCCceEEECcEEeCCCEEEEEEeC--------CCCEEECeEEeCCC
Confidence 44559999999864 48877 1 235588999999988899999743 4556666667666
Q ss_pred CeeEE
Q 047322 302 FNPII 306 (343)
Q Consensus 302 ~~~i~ 306 (343)
..+|.
T Consensus 146 ~~Gi~ 150 (236)
T PF05048_consen 146 DYGIY 150 (236)
T ss_pred ccceE
Confidence 56776
No 34
>COG3866 PelB Pectate lyase [Carbohydrate transport and metabolism]
Probab=98.47 E-value=1e-05 Score=72.36 Aligned_cols=130 Identities=22% Similarity=0.255 Sum_probs=91.9
Q ss_pred EEEEEeeEEEecCCcCCcCCCcceEEEEeeeeEEEEc-c---eEeCCCCccccccCCCCCCCCCceEEEEEecCcEEEEe
Q 047322 83 IVFQIDGTIIAPSSYWSLGNSGFWILFYKVNRLSIHG-G---TIDATGAGYWACRKSGKSCPPPTRSISFVGASNIVVSG 158 (343)
Q Consensus 83 ~~l~~~g~l~~~~~~~~~~~~~~~i~~~~~~ni~I~G-G---~idg~g~~~w~~~~~~~~~~~~~~~i~~~~~~nv~i~~ 158 (343)
+.+.+.|++..+. +. ...+.+..++|.+|.| | ++.| ..+.++.++||.|++
T Consensus 77 ~ii~v~Gti~~s~-ps-----~~k~~iki~sNkTivG~g~~a~~~g-------------------~gl~i~~a~NVIirN 131 (345)
T COG3866 77 VIIVVKGTITAST-PS-----DKKITIKIGSNKTIVGSGADATLVG-------------------GGLKIRDAGNVIIRN 131 (345)
T ss_pred EEEEEcceEeccC-CC-----CceEEEeeccccEEEeeccccEEEe-------------------ceEEEEeCCcEEEEe
Confidence 4666778877652 11 1236677789999998 4 4433 246777899999999
Q ss_pred eEEecCC-----ccEEEE-eceecEEEEeEEEECCCC---CCCCCee-eee-CcccEEEEccEEecCCceEEeCCC----
Q 047322 159 LTSINSR-----FFHIAI-DECVNIMLRKLKINAPSW---SPNTDGI-HIQ-SSSGITISNSAIMTGDDCISVGPG---- 223 (343)
Q Consensus 159 v~i~n~~-----~~~i~~-~~~~~v~i~~~~i~~~~~---~~~~DGi-~~~-~s~nv~I~n~~i~~~dD~i~i~~~---- 223 (343)
++|.... ...|.+ ...+++.|++|++..... ....||. ++. .+..|+|.+|++...+-+.-+++.
T Consensus 132 ltf~~~~~~d~~~D~Isi~~~~~nIWIDH~tf~~~s~~~~~~h~DGl~Dik~~AnyITiS~n~fhdh~Kssl~G~sD~~~ 211 (345)
T COG3866 132 LTFEGFYQGDPNYDAISIYDDGHNIWIDHNTFSGGSYNASGSHGDGLVDIKKDANYITISYNKFHDHDKSSLLGSSDSSN 211 (345)
T ss_pred eEEEeeccCCCCCCcEEeccCCeEEEEEeeEeccccccccccCCCccEEeccCCcEEEEEeeeeecCCeeeeeccCCccc
Confidence 9999766 467888 889999999999997322 2245664 344 467899999999876655555542
Q ss_pred ----ceeEEEEeeEEcCC
Q 047322 224 ----TKNLWIERIACGPG 237 (343)
Q Consensus 224 ----~~ni~i~n~~~~~~ 237 (343)
..+|++.+|+|.+.
T Consensus 212 ~~~~~~kvT~hhNyFkn~ 229 (345)
T COG3866 212 YDDGKYKVTIHHNYFKNL 229 (345)
T ss_pred ccCCceeEEEeccccccc
Confidence 25699999988753
No 35
>PLN02497 probable pectinesterase
Probab=98.45 E-value=5.7e-05 Score=70.03 Aligned_cols=201 Identities=17% Similarity=0.056 Sum_probs=116.7
Q ss_pred hHHHHHHHHHHhhhcC-CCcEEEEcCcEEEEEeEEecCCCcccEEEEEeeEEEecCCcCCcCCCcceEEEEeeeeEEEEc
Q 047322 41 ATQAFLRAWSSACYSN-SPATLHVPRGLFLVKSISFNGPCRHRIVFQIDGTIIAPSSYWSLGNSGFWILFYKVNRLSIHG 119 (343)
Q Consensus 41 dt~Aiq~Ai~~a~~~~-~g~~V~ip~G~Y~~~~l~l~~~~ks~~~l~~~g~l~~~~~~~~~~~~~~~i~~~~~~ni~I~G 119 (343)
|=..||+||+++.... ...+|+|-+|+|+ ..+.+... |.+++|..+|. + ...|...+..
T Consensus 43 df~TIq~AIdavP~~~~~~~~I~Ik~G~Y~-EkV~Ip~~-k~~itl~G~g~-----~-------~tiIt~~~~~------ 102 (331)
T PLN02497 43 NFTTIQSAIDSVPSNNKHWFCINVKAGLYR-EKVKIPYD-KPFIVLVGAGK-----R-------RTRIEWDDHD------ 102 (331)
T ss_pred CccCHHHHHhhccccCCceEEEEEeCcEEE-EEEEecCC-CCcEEEEecCC-----C-------CceEEEeccc------
Confidence 3567999998653222 2236899999996 44455322 56788776641 0 0111110000
Q ss_pred ceEeCCCCccccccCCCCCCCCCceEEEEEecCcEEEEeeEEecCCc-----------cEE-EEeceecEEEEeEEEECC
Q 047322 120 GTIDATGAGYWACRKSGKSCPPPTRSISFVGASNIVVSGLTSINSRF-----------FHI-AIDECVNIMLRKLKINAP 187 (343)
Q Consensus 120 G~idg~g~~~w~~~~~~~~~~~~~~~i~~~~~~nv~i~~v~i~n~~~-----------~~i-~~~~~~~v~i~~~~i~~~ 187 (343)
++ ... .-....++++..++++|.|... ..+ .....+...+.+|++.+.
T Consensus 103 ~t-------------------~~S-aT~~v~a~~f~a~nlT~~Nt~~~~~~~~~~~~~QAVAl~v~gDr~~fy~C~f~G~ 162 (331)
T PLN02497 103 ST-------------------AQS-PTFSTLADNTVVKSITFANSYNFPSKGNKNPRVPAVAAMIGGDKSAFYSCGFAGV 162 (331)
T ss_pred cc-------------------cCc-eEEEEecCCeEEEccEEEeCCCCccccCCCCCcceEEEEecCCcEEEEeeEEecc
Confidence 00 001 1223457899999999998642 122 223468889999999985
Q ss_pred CCCCCCCeeeeeCcccEEEEccEEecCCceEEeCCCceeEEEEeeEEcCC--------ceEEEeecccCcCcccccCcEE
Q 047322 188 SWSPNTDGIHIQSSSGITISNSAIMTGDDCISVGPGTKNLWIERIACGPG--------HGIRMKKALAALGPMLLKMVLK 259 (343)
Q Consensus 188 ~~~~~~DGi~~~~s~nv~I~n~~i~~~dD~i~i~~~~~ni~i~n~~~~~~--------~gi~i~~~~gs~g~~~~~~~~~ 259 (343)
+| -+.. ...+-.+++|+|...=|-| + +.-...++||.+..- .|.-. ..+.. ......
T Consensus 163 QD-----TLy~-~~gRqyf~~C~IeG~VDFI-F--G~g~a~Fe~C~I~s~~~~~~~~~~g~IT-----A~~r~-~~~~~~ 227 (331)
T PLN02497 163 QD-----TLWD-SDGRHYFKRCTIQGAVDFI-F--GSGQSIYESCVIQVLGGQLEPGLAGFIT-----AQGRT-NPYDAN 227 (331)
T ss_pred cc-----ceee-CCCcEEEEeCEEEecccEE-c--cCceEEEEccEEEEecCcCCCCCceEEE-----ecCCC-CCCCCc
Confidence 54 3432 2356889999999876654 2 345789999988631 13222 11111 122345
Q ss_pred EEEEEceEEeCCceEEEEEeecCCCCceEEeEEEEeEEEecC
Q 047322 260 NVTVTDSIFTGTQNGVRIKTWARPSNGFARNIRFRNIIMTKV 301 (343)
Q Consensus 260 ni~i~n~~~~~~~~gi~i~~~~~~~~g~i~nI~~~ni~~~~~ 301 (343)
-..|.||++.... -+.+.- .=..-..+.|.|..|.+.
T Consensus 228 GfvF~~C~itg~g-~~yLGR----PW~~ysrvvf~~t~m~~~ 264 (331)
T PLN02497 228 GFVFKNCLVYGTG-SAYLGR----PWRGYSRVLFYNSNLTDV 264 (331)
T ss_pred eEEEEccEEccCC-CEEEeC----CCCCCceEEEEecccCCe
Confidence 7899999998742 334431 112246888988888764
No 36
>PF14592 Chondroitinas_B: Chondroitinase B; PDB: 1OFM_A 1OFL_A 1DBO_A 1DBG_A.
Probab=98.36 E-value=3.6e-05 Score=73.07 Aligned_cols=32 Identities=19% Similarity=0.250 Sum_probs=22.2
Q ss_pred hHHHHHHHHHHhhhcCCCcEEEEcCcEEEEEeEEe
Q 047322 41 ATQAFLRAWSSACYSNSPATLHVPRGLFLVKSISF 75 (343)
Q Consensus 41 dt~Aiq~Ai~~a~~~~~g~~V~ip~G~Y~~~~l~l 75 (343)
+.++||+||+.| .+|.+|+++.|+|.-..|.+
T Consensus 3 s~~~lq~Ai~~a---~pGD~I~L~~Gty~~~~i~~ 34 (425)
T PF14592_consen 3 SVAELQSAIDNA---KPGDTIVLADGTYKDVEIVF 34 (425)
T ss_dssp SHHHHHHHHHH-----TT-EEEE-SEEEET-EEEE
T ss_pred CHHHHHHHHHhC---CCCCEEEECCceeecceEEE
Confidence 468999999866 57899999999998334555
No 37
>PLN02480 Probable pectinesterase
Probab=98.33 E-value=0.00048 Score=64.37 Aligned_cols=202 Identities=13% Similarity=0.079 Sum_probs=117.5
Q ss_pred chHHHHHHHHHHhhhcC-CCcEEEEcCcEEEEEeEEecCCCcccEEEEEeeEEEecCCcCCcCCCcceEEEEeeeeEEEE
Q 047322 40 DATQAFLRAWSSACYSN-SPATLHVPRGLFLVKSISFNGPCRHRIVFQIDGTIIAPSSYWSLGNSGFWILFYKVNRLSIH 118 (343)
Q Consensus 40 Ddt~Aiq~Ai~~a~~~~-~g~~V~ip~G~Y~~~~l~l~~~~ks~~~l~~~g~l~~~~~~~~~~~~~~~i~~~~~~ni~I~ 118 (343)
.|=..||+||+++.... ..-+|+|.+|+|. ..+.+... |.+++|..++. +...|.
T Consensus 58 g~f~TIQ~AIdaap~~~~~~~~I~Ik~GvY~-E~V~I~~~-kp~ItL~G~g~----------------------~~TvI~ 113 (343)
T PLN02480 58 GDFTSVQSAIDAVPVGNSEWIIVHLRKGVYR-EKVHIPEN-KPFIFMRGNGK----------------------GRTSIV 113 (343)
T ss_pred CCcccHHHHHhhCccCCCceEEEEEcCcEEE-EEEEECCC-CceEEEEecCC----------------------CCeEEE
Confidence 46778999998652211 1124789999998 66666322 45566655531 111222
Q ss_pred cceEeCCCCccccccCCCCCCCCCceEEEEEecCcEEEEeeEEecCC---------ccEEEE-eceecEEEEeEEEECCC
Q 047322 119 GGTIDATGAGYWACRKSGKSCPPPTRSISFVGASNIVVSGLTSINSR---------FFHIAI-DECVNIMLRKLKINAPS 188 (343)
Q Consensus 119 GG~idg~g~~~w~~~~~~~~~~~~~~~i~~~~~~nv~i~~v~i~n~~---------~~~i~~-~~~~~v~i~~~~i~~~~ 188 (343)
+ +... ........+. ..++++++++++|+|+. ..++-+ ..++++.+++|++.+.+
T Consensus 114 ~-----~~~~---------~~~~~saTvt-V~a~~f~a~nLTf~Nta~~g~~~~~~~QAVAl~v~gDra~f~~c~f~G~Q 178 (343)
T PLN02480 114 W-----SQSS---------SDNAASATFT-VEAPHFVAFGISIRNDAPTGMAFTSENQSVAAFVGADKVAFYHCAFYSTH 178 (343)
T ss_pred c-----cccc---------cCCCCceEEE-EECCCEEEEeeEEEecCCCCCCCCCCCceEEEEecCCcEEEEeeEEeccc
Confidence 1 1100 0000122333 34788999999999872 133433 45788999999999754
Q ss_pred CCCCCCeeeeeCcccEEEEccEEecCCceEEeCCCceeEEEEeeEEcCC-------ceEEEeecccCcCcccccCcEEEE
Q 047322 189 WSPNTDGIHIQSSSGITISNSAIMTGDDCISVGPGTKNLWIERIACGPG-------HGIRMKKALAALGPMLLKMVLKNV 261 (343)
Q Consensus 189 ~~~~~DGi~~~~s~nv~I~n~~i~~~dD~i~i~~~~~ni~i~n~~~~~~-------~gi~i~~~~gs~g~~~~~~~~~ni 261 (343)
| -+.. ...+-.++||+|...=|-| + +.-...++||++..- .|.-. ..+.. ...-...
T Consensus 179 D-----TLy~-~~gR~yf~~C~IeG~VDFI-F--G~g~a~fe~C~i~s~~~~~~~~~G~IT-----A~~r~--~~~~~Gf 242 (343)
T PLN02480 179 N-----TLFD-YKGRHYYHSCYIQGSIDFI-F--GRGRSIFHNCEIFVIADRRVKIYGSIT-----AHNRE--SEDNSGF 242 (343)
T ss_pred c-----eeEe-CCCCEEEEeCEEEeeeeEE-c--cceeEEEEccEEEEecCCCCCCceEEE-----cCCCC--CCCCCEE
Confidence 3 3432 2346888999998765544 2 345789999988631 24222 12221 1234578
Q ss_pred EEEceEEeCCceEEEEEeecCCCCceEEeEEEEeEEEecC
Q 047322 262 TVTDSIFTGTQNGVRIKTWARPSNGFARNIRFRNIIMTKV 301 (343)
Q Consensus 262 ~i~n~~~~~~~~gi~i~~~~~~~~g~i~nI~~~ni~~~~~ 301 (343)
.|.||++.... .+.+.- .=+.-..+.|.|..|.+.
T Consensus 243 vF~~C~i~g~g-~~yLGR----PW~~ya~vVf~~t~l~~~ 277 (343)
T PLN02480 243 VFIKGKVYGIG-EVYLGR----AKGAYSRVIFAKTYLSKT 277 (343)
T ss_pred EEECCEEcccC-ceeeec----CCCCcceEEEEecccCCe
Confidence 99999998742 344541 123357788888888653
No 38
>PRK10123 wcaM putative colanic acid biosynthesis protein; Provisional
Probab=98.25 E-value=4.5e-05 Score=67.87 Aligned_cols=57 Identities=23% Similarity=0.362 Sum_probs=42.4
Q ss_pred CceEEEeecCccCCCCcchHHHHHHHHHHhhhcCCCcEEEEcCcEEE--EEe-EEecCCCcccEEEEEeeEEEec
Q 047322 23 SAAYNVINFGAKPDGKSDATQAFLRAWSSACYSNSPATLHVPRGLFL--VKS-ISFNGPCRHRIVFQIDGTIIAP 94 (343)
Q Consensus 23 ~~~~~v~d~GA~gdg~tDdt~Aiq~Ai~~a~~~~~g~~V~ip~G~Y~--~~~-l~l~~~~ks~~~l~~~g~l~~~ 94 (343)
..++++.||-. .|=-++|.+|+.+ +.+|++|+|--. +.+ +.+ +..-||++.|.|...
T Consensus 32 ~~~vni~dy~~-----~dwiasfkqaf~e------~qtvvvpagl~cenint~ifi----p~gktl~v~g~l~gn 91 (464)
T PRK10123 32 RQSVNINDYNP-----HDWIASFKQAFSE------GQTVVVPAGLVCDNINTGIFI----PPGKTLHILGSLRGN 91 (464)
T ss_pred CceeehhhcCc-----ccHHHHHHHHhcc------CcEEEecCccEecccccceEe----CCCCeEEEEEEeecC
Confidence 66999999963 3667899999853 579999999632 443 666 467888888887764
No 39
>PF00544 Pec_lyase_C: Pectate lyase; InterPro: IPR002022 Pectate lyase 4.2.2.2 from EC is an enzyme involved in the maceration and soft rotting of plant tissue. Pectate lyase is responsible for the eliminative cleavage of pectate, yielding oligosaccharides with 4-deoxy-alpha-D-mann-4-enuronosyl groups at their non-reducing ends. The protein is maximally expressed late in pollen development. It has been suggested that the pollen expression of pectate lyase genes might relate to a requirement for pectin degradation during pollen tube growth []. The structure and the folding kinetics of one member of this family, pectate lyase C (pelC)1 from Erwinia chrysanthemi has been investigated in some detail [,]. PelC contains a parallel beta-helix folding motif. The majority of the regular secondary structure is composed of parallel beta-sheets (about 30%). The individual strands of the sheets are connected by unordered loops of varying length. The backbone is then formed by a large helix composed of beta-sheets. There are two disulphide bonds in pelC and 12 proline residues. One of these prolines, Pro220, is involved in a cis peptide bond. he folding mechanism of pelC involves two slow phases that have been attributed to proline isomerization. Some of the proteins in this family are allergens. Allergies are hypersensitivity reactions of the immune system to specific substances called allergens (such as pollen, stings, drugs, or food) that, in most people, result in no symptoms. A nomenclature system has been established for antigens (allergens) that cause IgE-mediated atopic allergies in humans [WHO/IUIS Allergen Nomenclature Subcommittee King T.P., Hoffmann D., Loewenstein H., Marsh D.G., Platts-Mills T.A.E., Thomas W. Bull. World Health Organ. 72:797-806(1994)]. This nomenclature system is defined by a designation that is composed of the first three letters of the genus; a space; the first letter of the species name; a space and an arabic number. In the event that two species names have identical designations, they are discriminated from one another by adding one or more letters (as necessary) to each species designation. The allergens in this family include allergens with the following designations: Amb a 1, Amb a 2, Amb a 3, Cha o 1, Cup a 1, Cry j 1, Jun a 1. Two of the major allergens in the pollen of short ragweed (Ambrosia artemisiifolia) are Amb aI and Amb aII. The primary structure of Amb aII has been deduced and has been shown to share ~65% sequence identity with the Amb alpha I multigene family of allergens []. Members of the Amb aI/aII family include Nicotiana tabacum (Common tobacco) pectate lyase, which is similar to the deduced amino acid sequences of two pollen-specific pectate lyase genes identified in Solanum lycopersicum (Tomato) (Lycopersicon esculentum) []; Cry jI, a major allergenic glycoprotein of Cryptomeria japonica (Japanese cedar) - the most common pollen allergen in Japan []; and P56 and P59, which share sequence similarity with pectate lyases of plant pathogenic bacteria [].; PDB: 1O8M_A 1O8K_A 1O8E_A 1O8H_A 2PEC_A 1PLU_A 1O8I_A 1O8J_A 1O8D_A 1O8F_A ....
Probab=98.25 E-value=6.6e-06 Score=71.49 Aligned_cols=76 Identities=21% Similarity=0.247 Sum_probs=52.9
Q ss_pred CCCCeeeeeCcccEEEEccEEecC---------CceEEeCCCceeEEEEeeEEcCCc-eEEEeecccCcCcccccCcEEE
Q 047322 191 PNTDGIHIQSSSGITISNSAIMTG---------DDCISVGPGTKNLWIERIACGPGH-GIRMKKALAALGPMLLKMVLKN 260 (343)
Q Consensus 191 ~~~DGi~~~~s~nv~I~n~~i~~~---------dD~i~i~~~~~ni~i~n~~~~~~~-gi~i~~~~gs~g~~~~~~~~~n 260 (343)
...|+|.+.+++||+|++|.+..+ |..+.++.++.+|+|++|.|...+ +..+ |+......... ..
T Consensus 73 ~~~Dai~i~~~~nVWIDH~sfs~~~~~~~~~~~Dg~idi~~~s~~vTiS~n~f~~~~k~~l~----G~~d~~~~~~~-~~ 147 (200)
T PF00544_consen 73 SDGDAISIDNSSNVWIDHCSFSWGNFECNSDSSDGLIDIKKGSDNVTISNNIFDNHNKTMLI----GSSDSNSTDRG-LR 147 (200)
T ss_dssp CS--SEEEESTEEEEEES-EEEETTS-GGGSSSSSSEEEESSTEEEEEES-EEEEEEETCEE----SSCTTCGGGTT-EE
T ss_pred cCCCeEEEEecccEEEeccEEeccccccccccCCceEEEEeCCceEEEEchhcccccccccc----CCCCCccccCC-ce
Confidence 467899999999999999998766 445788888999999999998643 4445 55311122334 89
Q ss_pred EEEEceEEeCC
Q 047322 261 VTVTDSIFTGT 271 (343)
Q Consensus 261 i~i~n~~~~~~ 271 (343)
+++.++.+.++
T Consensus 148 vT~hhN~f~~~ 158 (200)
T PF00544_consen 148 VTFHHNYFANT 158 (200)
T ss_dssp EEEES-EEEEE
T ss_pred EEEEeEEECch
Confidence 99999999764
No 40
>PLN02176 putative pectinesterase
Probab=98.22 E-value=0.0008 Score=62.72 Aligned_cols=201 Identities=16% Similarity=0.074 Sum_probs=117.2
Q ss_pred hHHHHHHHHHHhhhcC-CCcEEEEcCcEEEEEeEEecCCCcccEEEEEeeEEEecCCcCCcCCCcceEEEEeeeeEEEEc
Q 047322 41 ATQAFLRAWSSACYSN-SPATLHVPRGLFLVKSISFNGPCRHRIVFQIDGTIIAPSSYWSLGNSGFWILFYKVNRLSIHG 119 (343)
Q Consensus 41 dt~Aiq~Ai~~a~~~~-~g~~V~ip~G~Y~~~~l~l~~~~ks~~~l~~~g~l~~~~~~~~~~~~~~~i~~~~~~ni~I~G 119 (343)
|=..||+||+++.... ..-+|+|++|+|+ ..+.+... |.+++|..+|.- ...|...+..
T Consensus 50 df~TIq~AIdavP~~~~~~~~I~Ik~GvY~-EkV~Ip~~-k~~vtl~G~g~~------------~TiIt~~~~~------ 109 (340)
T PLN02176 50 YFKTVQSAIDSIPLQNQNWIRILIQNGIYR-EKVTIPKE-KGYIYMQGKGIE------------KTIIAYGDHQ------ 109 (340)
T ss_pred CccCHHHHHhhchhcCCceEEEEECCcEEE-EEEEECCC-CccEEEEEcCCC------------ceEEEEeCCc------
Confidence 3567999998653222 2246889999997 44555322 567888776410 0111100000
Q ss_pred ceEeCCCCccccccCCCCCCCCCceEEEEEecCcEEEEeeEEecCCc----------cEE-EEeceecEEEEeEEEECCC
Q 047322 120 GTIDATGAGYWACRKSGKSCPPPTRSISFVGASNIVVSGLTSINSRF----------FHI-AIDECVNIMLRKLKINAPS 188 (343)
Q Consensus 120 G~idg~g~~~w~~~~~~~~~~~~~~~i~~~~~~nv~i~~v~i~n~~~----------~~i-~~~~~~~v~i~~~~i~~~~ 188 (343)
++ .....+. ..++++..++++|+|... ..+ .....+...+.+|++.+.+
T Consensus 110 ~t-------------------~~saT~~-v~a~~F~a~nlT~~Nt~~~~~~~~~~~~QAVAl~v~gDr~~f~~C~f~G~Q 169 (340)
T PLN02176 110 AT-------------------DTSATFT-SYASNIIITGITFKNTYNIASNSSRPTKPAVAARMLGDKYAIIDSSFDGFQ 169 (340)
T ss_pred cc-------------------ccceEEE-EECCCEEEEeeEEEeCCCccCCCCCCccceEEEEecCccEEEEccEEeccc
Confidence 00 0111223 357899999999998631 222 2344688999999999754
Q ss_pred CCCCCCeeeeeCcccEEEEccEEecCCceEEeCCCceeEEEEeeEEcC---------CceEEEeecccCcCcccccCcEE
Q 047322 189 WSPNTDGIHIQSSSGITISNSAIMTGDDCISVGPGTKNLWIERIACGP---------GHGIRMKKALAALGPMLLKMVLK 259 (343)
Q Consensus 189 ~~~~~DGi~~~~s~nv~I~n~~i~~~dD~i~i~~~~~ni~i~n~~~~~---------~~gi~i~~~~gs~g~~~~~~~~~ 259 (343)
| -+... ..+-.+++|.|...=|-|. +.-...++||++.. ..|.-. ..+.. ....-.
T Consensus 170 D-----TLy~~-~gRqyf~~CyIeG~VDFIF---G~a~a~Fe~C~I~s~~~~~~~~~~~g~IT-----A~~r~-~~~~~~ 234 (340)
T PLN02176 170 D-----TLFDG-KGRHYYKRCVISGGIDFIF---GYAQSIFEGCTLKLTLGIYPPNEPYGTIT-----AQGRP-SPSDKG 234 (340)
T ss_pred c-----eeEeC-CcCEEEEecEEEecccEEe---cCceEEEeccEEEEecccCCCCCCcEEEE-----eCCCC-CCCCCc
Confidence 3 34332 3578899999998767553 34578999998862 123222 12211 112345
Q ss_pred EEEEEceEEeCCceEEEEEeecCCCCceEEeEEEEeEEEecC
Q 047322 260 NVTVTDSIFTGTQNGVRIKTWARPSNGFARNIRFRNIIMTKV 301 (343)
Q Consensus 260 ni~i~n~~~~~~~~gi~i~~~~~~~~g~i~nI~~~ni~~~~~ 301 (343)
-..|.||++.... -+.+.- +=..-..+.|.|..|.+.
T Consensus 235 GfvF~~C~itg~g-~~yLGR----PW~~yarvVf~~t~m~~~ 271 (340)
T PLN02176 235 GFVFKDCTVTGVG-KALLGR----AWGSYARVIFYRSRFSDV 271 (340)
T ss_pred EEEEECCEEccCc-ceeeec----CCCCCceEEEEecCcCCe
Confidence 7999999998642 233431 112246788888888654
No 41
>PLN02773 pectinesterase
Probab=98.20 E-value=0.00046 Score=63.81 Aligned_cols=211 Identities=12% Similarity=0.056 Sum_probs=121.2
Q ss_pred HHHHHHHHHHhhhcC-CCcEEEEcCcEEEEEeEEecCCCcccEEEEEee---EEEecCCcCCcCCCcceEEEEeeeeEEE
Q 047322 42 TQAFLRAWSSACYSN-SPATLHVPRGLFLVKSISFNGPCRHRIVFQIDG---TIIAPSSYWSLGNSGFWILFYKVNRLSI 117 (343)
Q Consensus 42 t~Aiq~Ai~~a~~~~-~g~~V~ip~G~Y~~~~l~l~~~~ks~~~l~~~g---~l~~~~~~~~~~~~~~~i~~~~~~ni~I 117 (343)
=.-||+||+++.... ..-+|+|.+|+|+ ..+.+... |.+++|..++ ++..-.+.... . .....-..
T Consensus 17 f~TIq~Aida~P~~~~~~~~I~Ik~G~Y~-E~V~I~~~-k~~itl~G~~~~~TiI~~~~~a~~------~--~~~~~~~~ 86 (317)
T PLN02773 17 YCTVQDAIDAVPLCNRCRTVIRVAPGVYR-QPVYVPKT-KNLITLAGLSPEATVLTWNNTATK------I--DHHQASRV 86 (317)
T ss_pred ccCHHHHHhhchhcCCceEEEEEeCceEE-EEEEECcC-CccEEEEeCCCCceEEEccCcccc------c--cccccccc
Confidence 567999998653322 2347889999998 55666432 4567777663 21110000000 0 00000000
Q ss_pred Ec-ceEeCCCCccccccCCCCCCCCCceEEEEEecCcEEEEeeEEecCCc----cEE-EEeceecEEEEeEEEECCCCCC
Q 047322 118 HG-GTIDATGAGYWACRKSGKSCPPPTRSISFVGASNIVVSGLTSINSRF----FHI-AIDECVNIMLRKLKINAPSWSP 191 (343)
Q Consensus 118 ~G-G~idg~g~~~w~~~~~~~~~~~~~~~i~~~~~~nv~i~~v~i~n~~~----~~i-~~~~~~~v~i~~~~i~~~~~~~ 191 (343)
.| |+ .+. .-.+..++++..++++|+|... ..+ .....+.+.+.+|++.+.++
T Consensus 87 ~g~gT-------------------~~S-aTv~v~a~~f~a~nlT~~Nt~~~~~gQAvAl~v~gDr~~f~~c~~~G~QD-- 144 (317)
T PLN02773 87 IGTGT-------------------FGC-GTVIVEGEDFIAENITFENSAPEGSGQAVAIRVTADRCAFYNCRFLGWQD-- 144 (317)
T ss_pred cCcCc-------------------cCc-eEEEEECCCeEEEeeEEEeCCCCCCCcEEEEEecCccEEEEccEeecccc--
Confidence 01 11 112 2344468999999999999732 122 23357889999999998543
Q ss_pred CCCeeeeeCcccEEEEccEEecCCceEEeCCCceeEEEEeeEEcC-CceEEEeecccCcCcccccCcEEEEEEEceEEeC
Q 047322 192 NTDGIHIQSSSGITISNSAIMTGDDCISVGPGTKNLWIERIACGP-GHGIRMKKALAALGPMLLKMVLKNVTVTDSIFTG 270 (343)
Q Consensus 192 ~~DGi~~~~s~nv~I~n~~i~~~dD~i~i~~~~~ni~i~n~~~~~-~~gi~i~~~~gs~g~~~~~~~~~ni~i~n~~~~~ 270 (343)
-+.... .+..++||.|...=|-|. +.-...+++|.+.. ..|.-. ..+.. ....-.-..|.||++..
T Consensus 145 ---TL~~~~-gr~yf~~c~IeG~VDFIF---G~g~a~Fe~c~i~s~~~g~IT-----A~~r~-~~~~~~GfvF~~c~it~ 211 (317)
T PLN02773 145 ---TLYLHY-GKQYLRDCYIEGSVDFIF---GNSTALLEHCHIHCKSAGFIT-----AQSRK-SSQESTGYVFLRCVITG 211 (317)
T ss_pred ---eeEeCC-CCEEEEeeEEeecccEEe---eccEEEEEeeEEEEccCcEEE-----CCCCC-CCCCCceEEEEccEEec
Confidence 344433 478899999998767553 34578999999964 335322 11111 11223578999999987
Q ss_pred Cce--EEEEEeecCCCCceEEeEEEEeEEEecC
Q 047322 271 TQN--GVRIKTWARPSNGFARNIRFRNIIMTKV 301 (343)
Q Consensus 271 ~~~--gi~i~~~~~~~~g~i~nI~~~ni~~~~~ 301 (343)
... -+.+.- .=+.-..+.|.|..|.+.
T Consensus 212 ~~~~~~~yLGR----pW~~~a~vVf~~t~l~~~ 240 (317)
T PLN02773 212 NGGSGYMYLGR----PWGPFGRVVFAYTYMDAC 240 (317)
T ss_pred CCCCcceeecC----CCCCCceEEEEecccCCe
Confidence 532 233331 112346888999988764
No 42
>PLN02682 pectinesterase family protein
Probab=98.16 E-value=0.001 Score=62.51 Aligned_cols=214 Identities=13% Similarity=0.038 Sum_probs=122.7
Q ss_pred hHHHHHHHHHHhhhcC-CCcEEEEcCcEEEEEeEEecCCCcccEEEEEeeEEEecCCcCCcCCCcceEEEEeeeeEEEEc
Q 047322 41 ATQAFLRAWSSACYSN-SPATLHVPRGLFLVKSISFNGPCRHRIVFQIDGTIIAPSSYWSLGNSGFWILFYKVNRLSIHG 119 (343)
Q Consensus 41 dt~Aiq~Ai~~a~~~~-~g~~V~ip~G~Y~~~~l~l~~~~ks~~~l~~~g~l~~~~~~~~~~~~~~~i~~~~~~ni~I~G 119 (343)
|=.-||+||+++.... ...+|+|.||+|+ ..+.+... |++++|..+|.- ...|...+..
T Consensus 81 df~TIQ~AIdavP~~~~~r~vI~Ik~G~Y~-EkV~Ip~~-k~~Itl~G~g~~------------~TiIt~~~~a------ 140 (369)
T PLN02682 81 DFTTIQAAIDSLPVINLVRVVIKVNAGTYR-EKVNIPPL-KAYITLEGAGAD------------KTIIQWGDTA------ 140 (369)
T ss_pred CccCHHHHHhhccccCCceEEEEEeCceee-EEEEEecc-CceEEEEecCCC------------ccEEEecccc------
Confidence 4568999998653222 2357889999997 44555322 577888777520 0011110000
Q ss_pred ceEeCCCCccccccCCCCCCCCCceEEEEEecCcEEEEeeEEecCCc---------cEEE-EeceecEEEEeEEEECCCC
Q 047322 120 GTIDATGAGYWACRKSGKSCPPPTRSISFVGASNIVVSGLTSINSRF---------FHIA-IDECVNIMLRKLKINAPSW 189 (343)
Q Consensus 120 G~idg~g~~~w~~~~~~~~~~~~~~~i~~~~~~nv~i~~v~i~n~~~---------~~i~-~~~~~~v~i~~~~i~~~~~ 189 (343)
+.....|..+ ......-....++++..+|++|+|+.. ..+- ....+...+.+|++.+.+|
T Consensus 141 ~~~~~~g~~~----------gT~~SAT~~v~a~~F~a~nlTf~Nt~~~~~~g~~g~QAVAL~v~gDr~~fy~C~f~G~QD 210 (369)
T PLN02682 141 DTPGPGGRPL----------GTYGSATFAVNSPYFIAKNITFKNTAPVPPPGALGKQAVALRISADTAAFYGCKFLGAQD 210 (369)
T ss_pred CccCCCCCcc----------ccccceEEEEECCCeEEEeeEEEcccccCCCCCCcccEEEEEecCCcEEEEcceEecccc
Confidence 0000011100 111223344568899999999998642 1222 2457889999999998554
Q ss_pred CCCCCeeeeeCcccEEEEccEEecCCceEEeCCCceeEEEEeeEEcC---CceEEEeecccCcCcccccCcEEEEEEEce
Q 047322 190 SPNTDGIHIQSSSGITISNSAIMTGDDCISVGPGTKNLWIERIACGP---GHGIRMKKALAALGPMLLKMVLKNVTVTDS 266 (343)
Q Consensus 190 ~~~~DGi~~~~s~nv~I~n~~i~~~dD~i~i~~~~~ni~i~n~~~~~---~~gi~i~~~~gs~g~~~~~~~~~ni~i~n~ 266 (343)
-+... ..+-.++||+|...=|-|. +.-...+++|++.. ..|.-. ..+.. ....-....|.||
T Consensus 211 -----TLy~~-~gRqyf~~C~IeG~VDFIF---G~g~a~Fe~C~I~s~~~~~G~IT-----A~~r~-~~~~~~GfvF~~C 275 (369)
T PLN02682 211 -----TLYDH-LGRHYFKDCYIEGSVDFIF---GNGLSLYEGCHLHAIARNFGALT-----AQKRQ-SVLEDTGFSFVNC 275 (369)
T ss_pred -----ceEEC-CCCEEEEeeEEcccccEEe---cCceEEEEccEEEEecCCCeEEe-----cCCCC-CCCCCceEEEEee
Confidence 34332 3468899999998766552 34578999999863 234222 12211 1123468899999
Q ss_pred EEeCCceEEEEEeecCCCCceEEeEEEEeEEEecCCee
Q 047322 267 IFTGTQNGVRIKTWARPSNGFARNIRFRNIIMTKVFNP 304 (343)
Q Consensus 267 ~~~~~~~gi~i~~~~~~~~g~i~nI~~~ni~~~~~~~~ 304 (343)
++.... -+.+.- .=..-..+.|.|..|.+.-.|
T Consensus 276 ~itg~g-~~yLGR----pW~~yarvVf~~t~m~~~I~p 308 (369)
T PLN02682 276 KVTGSG-ALYLGR----AWGTFSRVVFAYTYMDNIIIP 308 (369)
T ss_pred EecCCC-ceEeec----CCCCcceEEEEeccCCCcCcC
Confidence 998742 234431 112346888999988765333
No 43
>PRK10531 acyl-CoA thioesterase; Provisional
Probab=98.15 E-value=0.00063 Score=64.90 Aligned_cols=145 Identities=12% Similarity=0.134 Sum_probs=90.4
Q ss_pred EEEEEecCcEEEEeeEEecCCc--------cEE-EEeceecEEEEeEEEECCCCCCCCCeeeee-----------CcccE
Q 047322 145 SISFVGASNIVVSGLTSINSRF--------FHI-AIDECVNIMLRKLKINAPSWSPNTDGIHIQ-----------SSSGI 204 (343)
Q Consensus 145 ~i~~~~~~nv~i~~v~i~n~~~--------~~i-~~~~~~~v~i~~~~i~~~~~~~~~DGi~~~-----------~s~nv 204 (343)
......+++++.++++|+|+.. ..+ .....+.+.+.+|+|.+.+| -+... ...+.
T Consensus 199 ATv~v~ad~F~a~NLTf~Ntag~~~~~~~~QAVALrv~GDra~fy~C~flG~QD-----TLy~~~~~~~~~~~~~~~gRq 273 (422)
T PRK10531 199 AVFWSQNNGLQLQNLTIENTLGDSVDAGNHPAVALRTDGDKVQIENVNILGRQD-----TFFVTNSGVQNRLETDRQPRT 273 (422)
T ss_pred EEEEEECCCEEEEeeEEEeCCCCCCCCCcceeEEEEEcCCcEEEEeeEEecccc-----eeeeccccccccccccccccE
Confidence 3455578999999999999743 122 23457889999999998554 23331 12368
Q ss_pred EEEccEEecCCceEEeCCCceeEEEEeeEEcCC------ceEEEeecccCcCcccccCcEEEEEEEceEEeCCce-EEEE
Q 047322 205 TISNSAIMTGDDCISVGPGTKNLWIERIACGPG------HGIRMKKALAALGPMLLKMVLKNVTVTDSIFTGTQN-GVRI 277 (343)
Q Consensus 205 ~I~n~~i~~~dD~i~i~~~~~ni~i~n~~~~~~------~gi~i~~~~gs~g~~~~~~~~~ni~i~n~~~~~~~~-gi~i 277 (343)
.+++|+|...=|-|. +.-...++||.+..- .|...+ .+ .....-..+.|.||++..... .+.+
T Consensus 274 Yf~~CyIeG~VDFIF---G~g~AvFenC~I~s~~~~~~~~g~ITA---~~----t~~~~~~GfvF~nCrit~~g~~~~yL 343 (422)
T PRK10531 274 YVKNSYIEGDVDFVF---GRGAVVFDNTEFRVVNSRTQQEAYVFA---PA----TLPNIYYGFLAINSRFNASGDGVAQL 343 (422)
T ss_pred EEEeCEEeecccEEc---cCceEEEEcCEEEEecCCCCCceEEEe---cC----CCCCCCCEEEEECCEEecCCCCCeec
Confidence 899999998766553 345788999988641 233221 11 112335679999999987432 2334
Q ss_pred E-eecCC--------CCceEEeEEEEeEEEecCCee
Q 047322 278 K-TWARP--------SNGFARNIRFRNIIMTKVFNP 304 (343)
Q Consensus 278 ~-~~~~~--------~~g~i~nI~~~ni~~~~~~~~ 304 (343)
+ .|... .......|.|.+..|...-.|
T Consensus 344 GRpW~~~s~~~~y~~~~~~~arvV~~~s~i~~~I~p 379 (422)
T PRK10531 344 GRAWDVDAGLSAYVNGANTNGQVVIRDSAINEGFNT 379 (422)
T ss_pred cCCCcccccccccccccCCcceEEEEeCcccceeCc
Confidence 3 12110 011246799999998764333
No 44
>PLN02634 probable pectinesterase
Probab=98.09 E-value=0.0019 Score=60.46 Aligned_cols=211 Identities=13% Similarity=0.020 Sum_probs=116.7
Q ss_pred hHHHHHHHHHHhhhc-CCCcEEEEcCcEEEEEeEEecCCCcccEEEEEeeEEEecCCcCCcCCCcceEEEEeeeeEEEEc
Q 047322 41 ATQAFLRAWSSACYS-NSPATLHVPRGLFLVKSISFNGPCRHRIVFQIDGTIIAPSSYWSLGNSGFWILFYKVNRLSIHG 119 (343)
Q Consensus 41 dt~Aiq~Ai~~a~~~-~~g~~V~ip~G~Y~~~~l~l~~~~ks~~~l~~~g~l~~~~~~~~~~~~~~~i~~~~~~ni~I~G 119 (343)
|=..||+||+++... ...-+|+|-||+|. ..+.+... |++++|..+|.- ...|...+..
T Consensus 67 df~TIQaAIda~P~~~~~r~vI~Ik~GvY~-EkV~Ip~~-k~~ItL~G~g~~------------~TiIt~~~~a------ 126 (359)
T PLN02634 67 DFRSVQDAVDSVPKNNTMSVTIKINAGFYR-EKVVVPAT-KPYITFQGAGRD------------VTAIEWHDRA------ 126 (359)
T ss_pred CccCHHHHHhhCcccCCccEEEEEeCceEE-EEEEEcCC-CCeEEEEecCCC------------ceEEEecccc------
Confidence 456899999865322 22347889999997 44555322 567888777520 0011110000
Q ss_pred ceEeCCCCccccccCCCCCCCCCceEEEEEecCcEEEEeeEEecCCc---------cEE-EEeceecEEEEeEEEECCCC
Q 047322 120 GTIDATGAGYWACRKSGKSCPPPTRSISFVGASNIVVSGLTSINSRF---------FHI-AIDECVNIMLRKLKINAPSW 189 (343)
Q Consensus 120 G~idg~g~~~w~~~~~~~~~~~~~~~i~~~~~~nv~i~~v~i~n~~~---------~~i-~~~~~~~v~i~~~~i~~~~~ 189 (343)
.....+|..+ ......-....++++..++++|+|... ..+ .....+...+.+|++.+.+|
T Consensus 127 ~~~~~~g~~~----------~T~~SaTv~V~a~~F~a~niTf~Nta~~~~~g~~~~QAVAl~v~gDra~f~~C~f~G~QD 196 (359)
T PLN02634 127 SDRGANGQQL----------RTYQTASVTVYANYFTARNISFKNTAPAPMPGMQGWQAVAFRISGDKAFFFGCGFYGAQD 196 (359)
T ss_pred cccCCCCccc----------ccccceEEEEECCCeEEEeCeEEeCCccCCCCCCCCceEEEEecCCcEEEEEeEEecccc
Confidence 0000011100 001112233357889999999988631 122 22346789999999997543
Q ss_pred CCCCCeeeeeCcccEEEEccEEecCCceEEeCCCceeEEEEeeEEcCC---ceEEEeecccCcCcccccCcEEEEEEEce
Q 047322 190 SPNTDGIHIQSSSGITISNSAIMTGDDCISVGPGTKNLWIERIACGPG---HGIRMKKALAALGPMLLKMVLKNVTVTDS 266 (343)
Q Consensus 190 ~~~~DGi~~~~s~nv~I~n~~i~~~dD~i~i~~~~~ni~i~n~~~~~~---~gi~i~~~~gs~g~~~~~~~~~ni~i~n~ 266 (343)
-+... ..+-.++||.|...=|-|. +.-...++||.+..- .|.-. ..+.. ....-....|.||
T Consensus 197 -----TL~~~-~gR~yf~~CyIeG~VDFIF---G~g~a~Fe~C~I~s~~~~~g~IT-----A~~R~-~~~~~~GfvF~~C 261 (359)
T PLN02634 197 -----TLCDD-AGRHYFKECYIEGSIDFIF---GNGRSMYKDCELHSIASRFGSIA-----AHGRT-CPEEKTGFAFVGC 261 (359)
T ss_pred -----eeeeC-CCCEEEEeeEEcccccEEc---CCceEEEeccEEEEecCCCcEEE-----eCCCC-CCCCCcEEEEEcC
Confidence 34322 3478889999987666542 345778999988642 24222 12211 1223467899999
Q ss_pred EEeCCceEEEEEeecCCCCceEEeEEEEeEEEecC
Q 047322 267 IFTGTQNGVRIKTWARPSNGFARNIRFRNIIMTKV 301 (343)
Q Consensus 267 ~~~~~~~gi~i~~~~~~~~g~i~nI~~~ni~~~~~ 301 (343)
++.... -+.++- .=+.-..+.|.+..|.+.
T Consensus 262 ~vtg~g-~~yLGR----PW~~yarvVf~~t~l~~~ 291 (359)
T PLN02634 262 RVTGTG-PLYVGR----AMGQYSRIVYAYTYFDAV 291 (359)
T ss_pred EEcCCc-ceEecC----CCCCcceEEEEecccCCE
Confidence 987642 234431 112346788888888654
No 45
>PF12708 Pectate_lyase_3: Pectate lyase superfamily protein; PDB: 3EQN_A 3EQO_A 2PYG_A 2PYH_A 3SUC_A 3GQ7_A 3GQ9_A 3GQA_A 3GQ8_A 2VBE_A ....
Probab=98.07 E-value=0.0021 Score=56.33 Aligned_cols=123 Identities=23% Similarity=0.343 Sum_probs=83.8
Q ss_pred EEEEeeEEecCC------ccEEEEeceecEEEEeEEEECCCCCCCCCeeeeeCcccEEEEccEEecCCceEEeCCCceeE
Q 047322 154 IVVSGLTSINSR------FFHIAIDECVNIMLRKLKINAPSWSPNTDGIHIQSSSGITISNSAIMTGDDCISVGPGTKNL 227 (343)
Q Consensus 154 v~i~~v~i~n~~------~~~i~~~~~~~v~i~~~~i~~~~~~~~~DGi~~~~s~nv~I~n~~i~~~dD~i~i~~~~~ni 227 (343)
+.|+++++.... ..++++..++++.|+++++.+. +.+|+.+..+....+.+..... ++.+..++.++
T Consensus 94 ~~i~nl~i~~~~~~~~~~~~~i~~~~~~~~~i~nv~~~~~----~~~~i~~~~~~~~~~~~~~~~~---~~~~~~~~~~~ 166 (225)
T PF12708_consen 94 IQIRNLTIDGNGIDPNNNNNGIRFNSSQNVSISNVRIENS----GGDGIYFNTGTDYRIIGSTHVS---GIFIDNGSNNV 166 (225)
T ss_dssp EEEEEEEEEETCGCE-SCEEEEEETTEEEEEEEEEEEES-----SS-SEEEECCEECEEECCEEEE---EEEEESCEEEE
T ss_pred EEEEeeEEEcccccCCCCceEEEEEeCCeEEEEeEEEEcc----CccEEEEEccccCcEeecccce---eeeeccceeEE
Confidence 448888887542 2568899999999999999973 4577887755454444443221 23333345677
Q ss_pred EEEeeEEcCC-ceEEEeecccCcCcccccCcEEEEEEEceEEeC-CceEEEEEeecCCCCceEEeEEEEeEEEecCCeeE
Q 047322 228 WIERIACGPG-HGIRMKKALAALGPMLLKMVLKNVTVTDSIFTG-TQNGVRIKTWARPSNGFARNIRFRNIIMTKVFNPI 305 (343)
Q Consensus 228 ~i~n~~~~~~-~gi~i~~~~gs~g~~~~~~~~~ni~i~n~~~~~-~~~gi~i~~~~~~~~g~i~nI~~~ni~~~~~~~~i 305 (343)
.+.|+.+..+ .|+.. .-+++.++|+++.+ ...|+.+... ++++++|++++++..++
T Consensus 167 ~~~~~~~~~~~~g~~~--------------~~~~~~i~n~~~~~~~~~gi~i~~~--------~~~~i~n~~i~~~~~g~ 224 (225)
T PF12708_consen 167 IVNNCIFNGGDNGIIL--------------GNNNITISNNTFEGNCGNGINIEGG--------SNIIISNNTIENCDDGI 224 (225)
T ss_dssp EEECEEEESSSCSEEC--------------EEEEEEEECEEEESSSSESEEEEEC--------SEEEEEEEEEESSSEEE
T ss_pred EECCccccCCCceeEe--------------ecceEEEEeEEECCccceeEEEECC--------eEEEEEeEEEECCccCc
Confidence 7788887765 35332 12799999999998 7789988753 23888999998888775
No 46
>smart00656 Amb_all Amb_all domain.
Probab=98.05 E-value=0.00044 Score=59.60 Aligned_cols=134 Identities=19% Similarity=0.206 Sum_probs=89.7
Q ss_pred EEEEEecCcEEEEeeEEecCC------ccEEEEeceecEEEEeEEEECCCC----CCCCCee-eee-CcccEEEEccEEe
Q 047322 145 SISFVGASNIVVSGLTSINSR------FFHIAIDECVNIMLRKLKINAPSW----SPNTDGI-HIQ-SSSGITISNSAIM 212 (343)
Q Consensus 145 ~i~~~~~~nv~i~~v~i~n~~------~~~i~~~~~~~v~i~~~~i~~~~~----~~~~DGi-~~~-~s~nv~I~n~~i~ 212 (343)
.+.+..++||.|++++|++.. .+++.+..+++|.|++|.+..... ....||. ++. .+.+|+|.+|.+.
T Consensus 33 gl~i~~~~NVIirnl~i~~~~~~~~~~~D~i~~~~~~~VwIDHct~s~~~~~~~~~~~~D~~~di~~~s~~vTvs~~~f~ 112 (190)
T smart00656 33 GLTIKSVSNVIIRNLTIHDPKPVYGSDGDAISIDGSSNVWIDHVSLSGCTVTGFGDDTYDGLIDIKNGSTYVTISNNYFH 112 (190)
T ss_pred EEEEEecceEEEeCCEEECCccCCCCCCCEEEEeCCCeEEEEccEeEcceeccCCCCCCCccEEECcccccEEEECceEe
Confidence 356667889999999999753 368999999999999999997410 1124564 443 4789999999998
Q ss_pred cCCceEEeCCCce-------eEEEEeeEEcCCce--EEEeecccCcCcccccCcEEEEEEEceEEeCCc-eEEEEEeecC
Q 047322 213 TGDDCISVGPGTK-------NLWIERIACGPGHG--IRMKKALAALGPMLLKMVLKNVTVTDSIFTGTQ-NGVRIKTWAR 282 (343)
Q Consensus 213 ~~dD~i~i~~~~~-------ni~i~n~~~~~~~g--i~i~~~~gs~g~~~~~~~~~ni~i~n~~~~~~~-~gi~i~~~~~ 282 (343)
..+-+.-++++.+ +|++.+|.+.+..+ =.+ .. ..+.+-|+.+.+.. .++.+.. +
T Consensus 113 ~h~~~~liG~~d~~~~~~~~~vT~h~N~~~~~~~R~P~~-----------r~---g~~hv~NN~~~n~~~~~~~~~~--~ 176 (190)
T smart00656 113 NHWKVMLLGHSDSDTDDGKMRVTIAHNYFGNLRQRAPRV-----------RF---GYVHVYNNYYTGWTSYAIGGRM--G 176 (190)
T ss_pred cCCEEEEEccCCCccccccceEEEECcEEcCcccCCCcc-----------cC---CEEEEEeeEEeCcccEeEecCC--C
Confidence 7666666665432 69999999976432 111 01 16788888888764 4444432 1
Q ss_pred CCCceEEeEEEEeEEEec
Q 047322 283 PSNGFARNIRFRNIIMTK 300 (343)
Q Consensus 283 ~~~g~i~nI~~~ni~~~~ 300 (343)
..|.+++..+++
T Consensus 177 ------~~v~~E~N~F~~ 188 (190)
T smart00656 177 ------ATILSEGNYFEA 188 (190)
T ss_pred ------cEEEEECeEEEC
Confidence 245555555543
No 47
>PLN02170 probable pectinesterase/pectinesterase inhibitor
Probab=98.04 E-value=0.0015 Score=64.17 Aligned_cols=208 Identities=11% Similarity=0.096 Sum_probs=122.5
Q ss_pred hHHHHHHHHHHhhh--cCCCcEEEEcCcEEEEEeEEecCCCcccEEEEEeeEEEecCCcCCcCCCcceEEEEeeeeEEEE
Q 047322 41 ATQAFLRAWSSACY--SNSPATLHVPRGLFLVKSISFNGPCRHRIVFQIDGTIIAPSSYWSLGNSGFWILFYKVNRLSIH 118 (343)
Q Consensus 41 dt~Aiq~Ai~~a~~--~~~g~~V~ip~G~Y~~~~l~l~~~~ks~~~l~~~g~l~~~~~~~~~~~~~~~i~~~~~~ni~I~ 118 (343)
|-.-||+||+++.. ....-+|+|.+|+|. ..+.+... |.+++|.++|. ....|.
T Consensus 236 ~f~TIq~AI~a~~~~~~~~r~vI~Ik~GvY~-E~V~I~~~-k~nItl~G~g~----------------------~~TiIt 291 (529)
T PLN02170 236 THKTIGEALLSTSLESGGGRTVIYLKAGTYH-ENLNIPTK-QKNVMLVGDGK----------------------GKTVIV 291 (529)
T ss_pred chhhHHHHHHhcccccCCceEEEEEeCCeeE-EEEecCCC-CceEEEEEcCC----------------------CCeEEE
Confidence 45789999985432 223467899999997 44555322 56777777652 111122
Q ss_pred cceEeCCCCccccccCCCCCCCCCceEEEEEecCcEEEEeeEEecCCc----cEEE-EeceecEEEEeEEEECCCCCCCC
Q 047322 119 GGTIDATGAGYWACRKSGKSCPPPTRSISFVGASNIVVSGLTSINSRF----FHIA-IDECVNIMLRKLKINAPSWSPNT 193 (343)
Q Consensus 119 GG~idg~g~~~w~~~~~~~~~~~~~~~i~~~~~~nv~i~~v~i~n~~~----~~i~-~~~~~~v~i~~~~i~~~~~~~~~ 193 (343)
+..-.+.| | ......-.....+++..+|++|+|... ..+- -...+...+.+|++.+.+|
T Consensus 292 ~~~~~~~g---~---------~T~~SaTv~v~~~~F~a~nitf~Ntag~~~~QAVALrv~gDr~~fy~C~f~GyQD---- 355 (529)
T PLN02170 292 GSRSNRGG---W---------TTYQTATVAAMGDGFIARDITFVNSAGPNSEQAVALRVGSDKSVVYRCSVEGYQD---- 355 (529)
T ss_pred eCCcCCCC---C---------ccccceEEEEEcCCeEEEeeEEEecCCCCCCceEEEEecCCcEEEEeeeEeccCC----
Confidence 20000000 0 011223344568899999999998733 2222 3457889999999998554
Q ss_pred CeeeeeCcccEEEEccEEecCCceEEeCCCceeEEEEeeEEcCC-----ceEEEeecccCcCcccccCcEEEEEEEceEE
Q 047322 194 DGIHIQSSSGITISNSAIMTGDDCISVGPGTKNLWIERIACGPG-----HGIRMKKALAALGPMLLKMVLKNVTVTDSIF 268 (343)
Q Consensus 194 DGi~~~~s~nv~I~n~~i~~~dD~i~i~~~~~ni~i~n~~~~~~-----~gi~i~~~~gs~g~~~~~~~~~ni~i~n~~~ 268 (343)
-+... ..+-..++|+|...=|-|. |.-...++||.+..- .|.-. ..|.. +...-..+.|.||++
T Consensus 356 -TLy~~-~~Rqyy~~C~I~GtVDFIF---G~a~avFq~C~I~~~~~~~~~g~IT-----Aq~R~-~~~~~~Gfvf~~C~i 424 (529)
T PLN02170 356 -SLYTH-SKRQFYRETDITGTVDFIF---GNSAVVFQSCNIAARKPSGDRNYVT-----AQGRS-DPNQNTGISIHNCRI 424 (529)
T ss_pred -cceeC-CCCEEEEeeEEccccceec---ccceEEEeccEEEEecCCCCceEEE-----ecCCC-CCCCCceEEEEeeEE
Confidence 34333 3467889999998666442 345789999988531 23222 12221 123346799999999
Q ss_pred eCCceEEEEEeecCCCCceEEeEEEEeEEEecCCee
Q 047322 269 TGTQNGVRIKTWARPSNGFARNIRFRNIIMTKVFNP 304 (343)
Q Consensus 269 ~~~~~gi~i~~~~~~~~g~i~nI~~~ni~~~~~~~~ 304 (343)
.... ..+++- +=..-..+.|.+..+.+.=.|
T Consensus 425 t~~~-~~yLGR----PW~~ysrvVf~~t~l~~~I~p 455 (529)
T PLN02170 425 TAES-MTYLGR----PWKEYSRTVVMQSFIDGSIHP 455 (529)
T ss_pred ecCC-ceeeeC----CCCCCceEEEEecccCCeecc
Confidence 8753 234431 112246788888888764333
No 48
>PLN02708 Probable pectinesterase/pectinesterase inhibitor
Probab=97.99 E-value=0.0012 Score=65.64 Aligned_cols=212 Identities=14% Similarity=0.107 Sum_probs=120.9
Q ss_pred HHHHHHHHHHhhhc--CCCcEEEEcCcEEEEEeEEecCCCcccEEEEEeeEEEecCCcCCcCCCcceEEEEeeeeEEEEc
Q 047322 42 TQAFLRAWSSACYS--NSPATLHVPRGLFLVKSISFNGPCRHRIVFQIDGTIIAPSSYWSLGNSGFWILFYKVNRLSIHG 119 (343)
Q Consensus 42 t~Aiq~Ai~~a~~~--~~g~~V~ip~G~Y~~~~l~l~~~~ks~~~l~~~g~l~~~~~~~~~~~~~~~i~~~~~~ni~I~G 119 (343)
=.-||+||+++... ...-+|+|.+|+|. ..+.+... |.+++|.++|. ....|.+
T Consensus 253 f~TIq~Av~a~p~~~~~~r~vI~vk~GvY~-E~V~i~~~-k~~v~l~G~g~----------------------~~TiIt~ 308 (553)
T PLN02708 253 YKTVQEAVNAAPDNNGDRKFVIRIKEGVYE-ETVRVPLE-KKNVVFLGDGM----------------------GKTVITG 308 (553)
T ss_pred ccCHHHHHHhhhhccCCccEEEEEeCceEE-eeeeecCC-CccEEEEecCC----------------------CceEEEe
Confidence 56799999865331 23458999999998 34444322 56777777652 1111111
Q ss_pred ceEeC-CCCccccccCCCCCCCCCceEEEEEecCcEEEEeeEEecCCc----cEEEE-eceecEEEEeEEEECCCCCCCC
Q 047322 120 GTIDA-TGAGYWACRKSGKSCPPPTRSISFVGASNIVVSGLTSINSRF----FHIAI-DECVNIMLRKLKINAPSWSPNT 193 (343)
Q Consensus 120 G~idg-~g~~~w~~~~~~~~~~~~~~~i~~~~~~nv~i~~v~i~n~~~----~~i~~-~~~~~v~i~~~~i~~~~~~~~~ 193 (343)
..-.+ .| | ......-.....+++..++++|+|... ..+-+ ..++.+.+.+|+|.+.++
T Consensus 309 ~~~~~~~g---~---------~T~~saT~~v~~~~f~a~~it~~Ntag~~~~QAVAlrv~~D~~~f~~c~~~G~QD---- 372 (553)
T PLN02708 309 SLNVGQPG---I---------STYNTATVGVLGDGFMARDLTIQNTAGPDAHQAVAFRSDSDLSVIENCEFLGNQD---- 372 (553)
T ss_pred cCccCCCC---c---------CccceEEEEEEcCCeEEEeeEEEcCCCCCCCceEEEEecCCcEEEEeeeeeeccc----
Confidence 00000 00 0 011122333457899999999998753 22332 457889999999998554
Q ss_pred CeeeeeCcccEEEEccEEecCCceEEeCCCceeEEEEeeEEcC---------C-ceEEEeecccCcCcccccCcEEEEEE
Q 047322 194 DGIHIQSSSGITISNSAIMTGDDCISVGPGTKNLWIERIACGP---------G-HGIRMKKALAALGPMLLKMVLKNVTV 263 (343)
Q Consensus 194 DGi~~~~s~nv~I~n~~i~~~dD~i~i~~~~~ni~i~n~~~~~---------~-~gi~i~~~~gs~g~~~~~~~~~ni~i 263 (343)
-+.... .+.-+++|+|...=|-|. |.-.+.++||.+.. + .+ .| ...|.. +...-..+.|
T Consensus 373 -TLy~~~-~rq~y~~C~I~GtVDFIF---G~a~avfq~c~i~~~~~~~~~~~~~~~-~i----TA~~r~-~~~~~~G~vf 441 (553)
T PLN02708 373 -TLYAHS-LRQFYKSCRIQGNVDFIF---GNSAAVFQDCAILIAPRQLKPEKGENN-AV----TAHGRT-DPAQSTGFVF 441 (553)
T ss_pred -cceeCC-CceEEEeeEEeecCCEEe---cCceEEEEccEEEEeccccCCCCCCce-EE----EeCCCC-CCCCCceEEE
Confidence 344333 467789999998766552 34588999998852 1 12 12 112221 1233468999
Q ss_pred EceEEeCCceEEE--------EEeecCCCCceEEeEEEEeEEEecCCee
Q 047322 264 TDSIFTGTQNGVR--------IKTWARPSNGFARNIRFRNIIMTKVFNP 304 (343)
Q Consensus 264 ~n~~~~~~~~gi~--------i~~~~~~~~g~i~nI~~~ni~~~~~~~~ 304 (343)
.||++.....-+. -+++=|-+=..-..+.|.+..+.+.-.|
T Consensus 442 ~~C~it~~~~~~~~~~~~~~~~~~yLGRPW~~ysr~V~~~s~l~~~I~p 490 (553)
T PLN02708 442 QNCLINGTEEYMKLYRSNPKVHKNFLGRPWKEYSRTVFIGCNLEALITP 490 (553)
T ss_pred EccEEecCCcccccccccccccceeeecCCCCcceEEEEecccCCeEcC
Confidence 9999977532111 0111110113357788888888765444
No 49
>PLN02432 putative pectinesterase
Probab=97.98 E-value=0.002 Score=58.92 Aligned_cols=201 Identities=15% Similarity=0.024 Sum_probs=117.0
Q ss_pred hHHHHHHHHHHhhhcC-CCcEEEEcCcEEEEEeEEecCCCcccEEEEEeeEEEecCCcCCcCCCcceEEEEeeeeEEEEc
Q 047322 41 ATQAFLRAWSSACYSN-SPATLHVPRGLFLVKSISFNGPCRHRIVFQIDGTIIAPSSYWSLGNSGFWILFYKVNRLSIHG 119 (343)
Q Consensus 41 dt~Aiq~Ai~~a~~~~-~g~~V~ip~G~Y~~~~l~l~~~~ks~~~l~~~g~l~~~~~~~~~~~~~~~i~~~~~~ni~I~G 119 (343)
|=.-||+||+++.+.. ...+|+|.+|+|. ..+.+... |.+++|..++. ++..|..
T Consensus 22 ~f~TIq~Aida~p~~~~~~~~I~I~~G~Y~-E~V~ip~~-k~~itl~G~~~----------------------~~TvI~~ 77 (293)
T PLN02432 22 DFRKIQDAIDAVPSNNSQLVFIWVKPGIYR-EKVVVPAD-KPFITLSGTQA----------------------SNTIITW 77 (293)
T ss_pred CccCHHHHHhhccccCCceEEEEEeCceeE-EEEEEecc-CceEEEEEcCC----------------------CCeEEEe
Confidence 3567999998653322 2357889999995 34555222 46677766531 1111111
Q ss_pred ceEeCCCCccccccCCCCCCCCCceEEEEEecCcEEEEeeEEecCCc---cEE-EEeceecEEEEeEEEECCCCCCCCCe
Q 047322 120 GTIDATGAGYWACRKSGKSCPPPTRSISFVGASNIVVSGLTSINSRF---FHI-AIDECVNIMLRKLKINAPSWSPNTDG 195 (343)
Q Consensus 120 G~idg~g~~~w~~~~~~~~~~~~~~~i~~~~~~nv~i~~v~i~n~~~---~~i-~~~~~~~v~i~~~~i~~~~~~~~~DG 195 (343)
+ ++. . ..+.. -....++++..++++|+|... ..+ .....+...+.+|++.+.++ -
T Consensus 78 ---~-~~~---~--------~~~sa-T~~v~a~~f~a~nlt~~Nt~g~~~QAvAl~v~gDr~~f~~c~~~G~QD-----T 136 (293)
T PLN02432 78 ---N-DGG---D--------IFESP-TLSVLASDFVGRFLTIQNTFGSSGKAVALRVAGDRAAFYGCRILSYQD-----T 136 (293)
T ss_pred ---c-CCc---c--------cccce-EEEEECCCeEEEeeEEEeCCCCCCceEEEEEcCCcEEEEcceEecccc-----e
Confidence 0 000 0 00111 233457899999999998632 222 22456889999999997543 3
Q ss_pred eeeeCcccEEEEccEEecCCceEEeCCCceeEEEEeeEEcC---CceEEEeecccCcCcccccCcEEEEEEEceEEeCCc
Q 047322 196 IHIQSSSGITISNSAIMTGDDCISVGPGTKNLWIERIACGP---GHGIRMKKALAALGPMLLKMVLKNVTVTDSIFTGTQ 272 (343)
Q Consensus 196 i~~~~s~nv~I~n~~i~~~dD~i~i~~~~~ni~i~n~~~~~---~~gi~i~~~~gs~g~~~~~~~~~ni~i~n~~~~~~~ 272 (343)
+... ..+-.++||.|...=|-|. +.-...+++|.+.. ..|.-. ..+.. ....-.-..|.||++....
T Consensus 137 Ly~~-~gr~yf~~c~I~G~VDFIF---G~g~a~Fe~c~i~s~~~~~g~it-----A~~r~-~~~~~~Gfvf~~c~itg~g 206 (293)
T PLN02432 137 LLDD-TGRHYYRNCYIEGATDFIC---GNAASLFEKCHLHSLSPNNGAIT-----AQQRT-SASENTGFTFLGCKLTGAG 206 (293)
T ss_pred eEEC-CCCEEEEeCEEEecccEEe---cCceEEEEeeEEEEecCCCCeEE-----ecCCC-CCCCCceEEEEeeEEcccc
Confidence 4332 3468899999998767653 34578999999863 234222 11111 1123357899999998632
Q ss_pred eEEEEEeecCCCCceEEeEEEEeEEEecC
Q 047322 273 NGVRIKTWARPSNGFARNIRFRNIIMTKV 301 (343)
Q Consensus 273 ~gi~i~~~~~~~~g~i~nI~~~ni~~~~~ 301 (343)
.+.++- +=+.-..+.|.|..|.+.
T Consensus 207 -~~yLGR----pW~~~srvvf~~t~l~~~ 230 (293)
T PLN02432 207 -TTYLGR----PWGPYSRVVFALSYMSSV 230 (293)
T ss_pred -hhhccC----CCCCccEEEEEecccCCe
Confidence 233331 112346888999888663
No 50
>PLN02916 pectinesterase family protein
Probab=97.96 E-value=0.0013 Score=64.22 Aligned_cols=211 Identities=11% Similarity=0.063 Sum_probs=122.2
Q ss_pred hHHHHHHHHHHhhh----cCCCcEEEEcCcEEEEEeEEecCCCcccEEEEEeeEEEecCCcCCcCCCcceEEEEeeeeEE
Q 047322 41 ATQAFLRAWSSACY----SNSPATLHVPRGLFLVKSISFNGPCRHRIVFQIDGTIIAPSSYWSLGNSGFWILFYKVNRLS 116 (343)
Q Consensus 41 dt~Aiq~Ai~~a~~----~~~g~~V~ip~G~Y~~~~l~l~~~~ks~~~l~~~g~l~~~~~~~~~~~~~~~i~~~~~~ni~ 116 (343)
|=.-||+||+++.+ ....-+|+|.+|+|. ..+.+... |.+++|..+|. ....
T Consensus 198 ~f~TIq~AI~a~P~~~~~~~~r~vI~Ik~GvY~-E~V~I~~~-k~~i~l~G~g~----------------------~~Ti 253 (502)
T PLN02916 198 THRTINQALAALSRMGKSRTNRVIIYVKAGVYN-EKVEIDRH-MKNVMFVGDGM----------------------DKTI 253 (502)
T ss_pred CccCHHHHHHhcccccCCCCceEEEEEeCceee-EEEEecCC-CceEEEEecCC----------------------CCcE
Confidence 34579999986532 122357999999997 44555322 56777777652 0111
Q ss_pred EEcc--eEeCCCCccccccCCCCCCCCCceEEEEEecCcEEEEeeEEecCCc----cEEE-EeceecEEEEeEEEECCCC
Q 047322 117 IHGG--TIDATGAGYWACRKSGKSCPPPTRSISFVGASNIVVSGLTSINSRF----FHIA-IDECVNIMLRKLKINAPSW 189 (343)
Q Consensus 117 I~GG--~idg~g~~~w~~~~~~~~~~~~~~~i~~~~~~nv~i~~v~i~n~~~----~~i~-~~~~~~v~i~~~~i~~~~~ 189 (343)
|.+. .-+|. ......-.....+++..++++|.|... ..+- -..++...+.+|+|.+.++
T Consensus 254 It~~~~~~~g~--------------~T~~SAT~~v~~~~F~A~nitf~Ntag~~~~QAVALrv~~D~a~fy~C~f~G~QD 319 (502)
T PLN02916 254 ITNNRNVPDGS--------------TTYSSATFGVSGDGFWARDITFENTAGPHKHQAVALRVSSDLSVFYRCSFKGYQD 319 (502)
T ss_pred EEeCCccCCCC--------------cceeeEEEEEECCCEEEEeeEEEeCCCCCCCceEEEEEcCCcEEEEeeeEeccCc
Confidence 1110 00110 011223344557899999999998632 2222 2357889999999998553
Q ss_pred CCCCCeeeeeCcccEEEEccEEecCCceEEeCCCceeEEEEeeEEcCC------ceEEEeecccCcCcccccCcEEEEEE
Q 047322 190 SPNTDGIHIQSSSGITISNSAIMTGDDCISVGPGTKNLWIERIACGPG------HGIRMKKALAALGPMLLKMVLKNVTV 263 (343)
Q Consensus 190 ~~~~DGi~~~~s~nv~I~n~~i~~~dD~i~i~~~~~ni~i~n~~~~~~------~gi~i~~~~gs~g~~~~~~~~~ni~i 263 (343)
-+.... .+-..++|+|...=|-| -|.-...++||.+..- .|.-. ..+.. ....-.-+.|
T Consensus 320 -----TLy~~~-~Rqyy~~C~I~GtVDFI---FG~a~avFq~C~I~~~~~~~~~~g~IT-----Aq~r~-~~~~~tGfvf 384 (502)
T PLN02916 320 -----TLFVHS-LRQFYRDCHIYGTIDFI---FGDAAVVFQNCDIFVRRPMDHQGNMIT-----AQGRD-DPHENTGISI 384 (502)
T ss_pred -----eeEeCC-CCEEEEecEEeccccee---ccCceEEEecCEEEEecCCCCCcceEE-----ecCCC-CCCCCcEEEE
Confidence 344333 46788999999876654 2456889999988531 23222 12221 1233578999
Q ss_pred EceEEeCCceEE----EEEeecCCCCceEEeEEEEeEEEecCCee
Q 047322 264 TDSIFTGTQNGV----RIKTWARPSNGFARNIRFRNIIMTKVFNP 304 (343)
Q Consensus 264 ~n~~~~~~~~gi----~i~~~~~~~~g~i~nI~~~ni~~~~~~~~ 304 (343)
.||++....... ..+++=|-+=..-+.+.|.+..|.+.=.|
T Consensus 385 ~~C~it~~~~~~~~~g~~~~yLGRPW~~ysrvVf~~t~~~~~I~p 429 (502)
T PLN02916 385 QHSRVRASPEFEAVKGRFKSFLGRPWKKYSRTVFLKTDLDGLIDP 429 (502)
T ss_pred EeeEEecCccccccccccceEeecCCCCCceEEEEecccCCeEcC
Confidence 999998753211 01111110113357888999998775333
No 51
>PLN02665 pectinesterase family protein
Probab=97.96 E-value=0.0021 Score=60.61 Aligned_cols=205 Identities=12% Similarity=0.021 Sum_probs=119.4
Q ss_pred hHHHHHHHHHHhhhcC-CCcEEEEcCcEEEEEeEEecCCCcccEEEEEeeEEEecCCcCCcCCCcceEEEEeeeeEEEEc
Q 047322 41 ATQAFLRAWSSACYSN-SPATLHVPRGLFLVKSISFNGPCRHRIVFQIDGTIIAPSSYWSLGNSGFWILFYKVNRLSIHG 119 (343)
Q Consensus 41 dt~Aiq~Ai~~a~~~~-~g~~V~ip~G~Y~~~~l~l~~~~ks~~~l~~~g~l~~~~~~~~~~~~~~~i~~~~~~ni~I~G 119 (343)
|-..||+||+++.... ..-+|+|.+|+|. ..+.+... |.+++|..++. + ... |..
T Consensus 79 df~TIq~AIdaiP~~~~~r~vI~Ik~GvY~-EkV~Ip~~-kp~Itl~G~~~-----~-------~ti----------It~ 134 (366)
T PLN02665 79 DFKTITDAIKSIPAGNTQRVIIDIGPGEYN-EKITIDRS-KPFVTLYGSPG-----A-------MPT----------LTF 134 (366)
T ss_pred CccCHHHHHhhCcccCCceEEEEEeCcEEE-EEEEecCC-CCEEEEEecCC-----C-------CCE----------EEE
Confidence 4667999998653222 2346789999998 44555322 56777766631 0 011 111
Q ss_pred ceEeCCCCccccccCCCCCCCCCceEEEEEecCcEEEEeeEEecCCc---------cEE-EEeceecEEEEeEEEECCCC
Q 047322 120 GTIDATGAGYWACRKSGKSCPPPTRSISFVGASNIVVSGLTSINSRF---------FHI-AIDECVNIMLRKLKINAPSW 189 (343)
Q Consensus 120 G~idg~g~~~w~~~~~~~~~~~~~~~i~~~~~~nv~i~~v~i~n~~~---------~~i-~~~~~~~v~i~~~~i~~~~~ 189 (343)
++....+ ......-....++++..+|++|+|... ..+ .....+...+.+|++.+.++
T Consensus 135 ---~~~a~~~----------gT~~SaTv~v~a~~F~a~nitf~Nta~~~~~~~~g~QAVAl~v~gDka~f~~C~f~G~QD 201 (366)
T PLN02665 135 ---DGTAAKY----------GTVYSATLIVESDYFMAANIIIKNSAPRPDGKRKGAQAVAMRISGDKAAFYNCRFIGFQD 201 (366)
T ss_pred ---CCccCCC----------CCcceEEEEEECCCeEEEeeEEEeCCCCcCCCCCCcceEEEEEcCCcEEEEcceeccccc
Confidence 1110000 011223344568999999999998631 222 22346889999999998543
Q ss_pred CCCCCeeeeeCcccEEEEccEEecCCceEEeCCCceeEEEEeeEEcC-C---ceEEEeecccCcCcccccCcEEEEEEEc
Q 047322 190 SPNTDGIHIQSSSGITISNSAIMTGDDCISVGPGTKNLWIERIACGP-G---HGIRMKKALAALGPMLLKMVLKNVTVTD 265 (343)
Q Consensus 190 ~~~~DGi~~~~s~nv~I~n~~i~~~dD~i~i~~~~~ni~i~n~~~~~-~---~gi~i~~~~gs~g~~~~~~~~~ni~i~n 265 (343)
-+... ..+-.++||+|...=|-|. +.-...+++|++.. . .|. | ...+.. ....-....|.|
T Consensus 202 -----TL~~~-~gr~yf~~CyIeG~VDFIF---G~g~a~fe~C~i~s~~~~~~g~-I----TA~~r~-~~~~~~GfvF~~ 266 (366)
T PLN02665 202 -----TLCDD-KGRHFFKDCYIEGTVDFIF---GSGKSLYLNTELHVVGDGGLRV-I----TAQARN-SEAEDSGFSFVH 266 (366)
T ss_pred -----eeEeC-CCCEEEEeeEEeeccceec---cccceeeEccEEEEecCCCcEE-E----EcCCCC-CCCCCceEEEEe
Confidence 34332 3468899999998766553 34577899998863 1 232 2 112211 112345788999
Q ss_pred eEEeCCceEEEEEeecCCCCceEEeEEEEeEEEecC
Q 047322 266 SIFTGTQNGVRIKTWARPSNGFARNIRFRNIIMTKV 301 (343)
Q Consensus 266 ~~~~~~~~gi~i~~~~~~~~g~i~nI~~~ni~~~~~ 301 (343)
|++......+.+.- .=+.-..+.|.+..|.+.
T Consensus 267 C~itg~~~~~yLGR----pW~~ysrvVf~~t~m~~~ 298 (366)
T PLN02665 267 CKVTGTGTGAYLGR----AWMSRPRVVFAYTEMSSV 298 (366)
T ss_pred eEEecCCCceeecC----CCCCcceEEEEccccCCe
Confidence 99988643345541 112345788999888764
No 52
>PF01095 Pectinesterase: Pectinesterase; InterPro: IPR000070 Pectinesterase 3.1.1.11 from EC (pectin methylesterase) catalyses the de-esterification of pectin into pectate and methanol. Pectin is one of the main components of the plant cell wall. In plants, pectinesterase plays an important role in cell wall metabolism during fruit ripening. In plant bacterial pathogens such as Erwinia carotovora and in fungal pathogens such as Aspergillus niger, pectinesterase is involved in maceration and soft-rotting of plant tissue. Plant pectinesterases are regulated by pectinesterase inhibitors, which are ineffective against microbial enzymes []. Prokaryotic and eukaryotic pectinesterases share a few regions of sequence similarity. The crystal structure of pectinesterase from Erwinia chrysanthemi revealed a beta-helix structure similar to that found in pectinolytic enzymes, though it is different from most structures of esterases []. The putative catalytic residues are in a similar location to those of the active site and substrate-binding cleft of pectate lyase.; GO: 0030599 pectinesterase activity, 0042545 cell wall modification, 0005618 cell wall; PDB: 1QJV_B 1XG2_A 1GQ8_A 2NTQ_A 2NTP_A 2NT9_A 2NT6_B 2NSP_B 2NTB_A 2NST_A ....
Probab=97.91 E-value=0.00039 Score=64.08 Aligned_cols=207 Identities=15% Similarity=0.121 Sum_probs=108.6
Q ss_pred hHHHHHHHHHHhhhcC-CCcEEEEcCcEEEEEeEEecCCCcccEEEEEeeEEEecCCcCCcCCCcceEEEEeeeeEEEEc
Q 047322 41 ATQAFLRAWSSACYSN-SPATLHVPRGLFLVKSISFNGPCRHRIVFQIDGTIIAPSSYWSLGNSGFWILFYKVNRLSIHG 119 (343)
Q Consensus 41 dt~Aiq~Ai~~a~~~~-~g~~V~ip~G~Y~~~~l~l~~~~ks~~~l~~~g~l~~~~~~~~~~~~~~~i~~~~~~ni~I~G 119 (343)
|=..||+||+++.... ..-+|+|.||+|. ..+.+... |.+++|..++. ....|.+
T Consensus 11 df~TIq~Aida~p~~~~~~~~I~I~~G~Y~-E~V~i~~~-k~~v~l~G~~~----------------------~~tiI~~ 66 (298)
T PF01095_consen 11 DFTTIQAAIDAAPDNNTSRYTIFIKPGTYR-EKVTIPRS-KPNVTLIGEGR----------------------DKTIITG 66 (298)
T ss_dssp SBSSHHHHHHHS-SSSSS-EEEEE-SEEEE---EEE-ST-STTEEEEES-T----------------------TTEEEEE
T ss_pred CccCHHHHHHhchhcCCceEEEEEeCeeEc-cccEeccc-cceEEEEecCC----------------------CceEEEE
Confidence 3456999998653222 2357999999998 44555422 46777766641 0111111
Q ss_pred --ceEeCCCCccccccCCCCCCCCCceEEEEEecCcEEEEeeEEecCCcc------EEEEeceecEEEEeEEEECCCCCC
Q 047322 120 --GTIDATGAGYWACRKSGKSCPPPTRSISFVGASNIVVSGLTSINSRFF------HIAIDECVNIMLRKLKINAPSWSP 191 (343)
Q Consensus 120 --G~idg~g~~~w~~~~~~~~~~~~~~~i~~~~~~nv~i~~v~i~n~~~~------~i~~~~~~~v~i~~~~i~~~~~~~ 191 (343)
...++.+ ..+...+ ....+++.+++++|.|.... .+. ...+.+.+.+|++.+.+
T Consensus 67 ~~~~~~~~~-------------t~~saT~-~v~a~~f~~~nit~~Nt~g~~~~qAvAl~-~~~d~~~f~~c~~~g~Q--- 128 (298)
T PF01095_consen 67 NDNAADGGG-------------TFRSATF-SVNADDFTAENITFENTAGPSGGQAVALR-VSGDRAAFYNCRFLGYQ--- 128 (298)
T ss_dssp ---TTTB-H-------------CGGC-SE-EE-STT-EEEEEEEEEHCSGSG----SEE-ET-TSEEEEEEEEE-ST---
T ss_pred ecccccccc-------------ccccccc-cccccceeeeeeEEecCCCCcccceeeee-ecCCcEEEEEeEEcccc---
Confidence 0000000 0011222 34579999999999986421 233 35688999999999854
Q ss_pred CCCeeeeeCcccEEEEccEEecCCceEEeCCCceeEEEEeeEEcCC------ceEEEeecccCcCcccccCcEEEEEEEc
Q 047322 192 NTDGIHIQSSSGITISNSAIMTGDDCISVGPGTKNLWIERIACGPG------HGIRMKKALAALGPMLLKMVLKNVTVTD 265 (343)
Q Consensus 192 ~~DGi~~~~s~nv~I~n~~i~~~dD~i~i~~~~~ni~i~n~~~~~~------~gi~i~~~~gs~g~~~~~~~~~ni~i~n 265 (343)
|-+.... .+..++||+|...-|-|.= .....++||.+..- .|.-.+ .+.. +...-..+.|.|
T Consensus 129 --DTL~~~~-~r~y~~~c~IeG~vDFIfG---~~~a~f~~c~i~~~~~~~~~~~~ItA-----~~r~-~~~~~~G~vF~~ 196 (298)
T PF01095_consen 129 --DTLYANG-GRQYFKNCYIEGNVDFIFG---NGTAVFENCTIHSRRPGGGQGGYITA-----QGRT-SPSQKSGFVFDN 196 (298)
T ss_dssp --T-EEE-S-SEEEEES-EEEESEEEEEE---SSEEEEES-EEEE--SSTSSTEEEEE-----E----CTTSS-EEEEES
T ss_pred --ceeeecc-ceeEEEeeEEEecCcEEEC---CeeEEeeeeEEEEeccccccceeEEe-----CCcc-ccCCCeEEEEEE
Confidence 4455443 4688899999987776642 34678999988621 232221 1111 123457889999
Q ss_pred eEEeCCceE--------EEEEeecCCCCceEEeEEEEeEEEecCCeeE
Q 047322 266 SIFTGTQNG--------VRIKTWARPSNGFARNIRFRNIIMTKVFNPI 305 (343)
Q Consensus 266 ~~~~~~~~g--------i~i~~~~~~~~g~i~nI~~~ni~~~~~~~~i 305 (343)
|++...... ..+.- +=+.-..+.|.|..|.+.-.|-
T Consensus 197 c~i~~~~~~~~~~~~~~~yLGR----pW~~~s~vvf~~t~m~~~I~p~ 240 (298)
T PF01095_consen 197 CTITGDSGVSPSYSDGSVYLGR----PWGPYSRVVFINTYMDDHINPE 240 (298)
T ss_dssp -EEEESTTTCGGCCCSTEEEE------SSEETEEEEES-EE-TTEETC
T ss_pred eEEecCccccccccceeEEecC----cccceeeEEEEccccCCeeecc
Confidence 999875321 22321 1223467899999998764443
No 53
>PLN02671 pectinesterase
Probab=97.87 E-value=0.0037 Score=58.65 Aligned_cols=209 Identities=11% Similarity=0.061 Sum_probs=120.3
Q ss_pred hHHHHHHHHHHhhhcC-CCcEEEEcCcEEEEEeEEecCCCcccEEEEEeeEEEecCCcCCcCCCcceEEEEeeeeEEEEc
Q 047322 41 ATQAFLRAWSSACYSN-SPATLHVPRGLFLVKSISFNGPCRHRIVFQIDGTIIAPSSYWSLGNSGFWILFYKVNRLSIHG 119 (343)
Q Consensus 41 dt~Aiq~Ai~~a~~~~-~g~~V~ip~G~Y~~~~l~l~~~~ks~~~l~~~g~l~~~~~~~~~~~~~~~i~~~~~~ni~I~G 119 (343)
|=.-||+||+++.+.. ..-+|+|.||+|. ..+.+... |.+++|..++. . ..+..|..
T Consensus 70 df~TIQ~AIdavP~~~~~~~~I~Ik~GvY~-EkV~I~~~-k~~Itl~G~g~-----~---------------~~~TvIt~ 127 (359)
T PLN02671 70 DSLTVQGAVDMVPDYNSQRVKIYILPGIYR-EKVLVPKS-KPYISFIGNES-----R---------------AGDTVISW 127 (359)
T ss_pred CccCHHHHHHhchhcCCccEEEEEeCceEE-EEEEECCC-CCeEEEEecCC-----C---------------CCCEEEEc
Confidence 3668999998653322 2357999999997 44555322 56777766541 0 01111211
Q ss_pred ----ceEeCCCCccccccCCCCCCCCCceEEEEEecCcEEEEeeEEecCCc--------cEE-EEeceecEEEEeEEEEC
Q 047322 120 ----GTIDATGAGYWACRKSGKSCPPPTRSISFVGASNIVVSGLTSINSRF--------FHI-AIDECVNIMLRKLKINA 186 (343)
Q Consensus 120 ----G~idg~g~~~w~~~~~~~~~~~~~~~i~~~~~~nv~i~~v~i~n~~~--------~~i-~~~~~~~v~i~~~~i~~ 186 (343)
+....+|..| ......-....++++..++++|+|... ..+ .....+.+.+.+|++.+
T Consensus 128 ~~~a~~~~~~g~~~----------gT~~SaTv~v~a~~F~a~nitfeNt~~~~~g~~~~QAVALrv~gDra~f~~c~f~G 197 (359)
T PLN02671 128 NDKASDLDSNGFEL----------GTYRTASVTIESDYFCATGITFENTVVAEPGGQGMQAVALRISGDKAFFYKVRVLG 197 (359)
T ss_pred CCcccccccCCccc----------cceeeEEEEEECCceEEEeeEEEcCCCCCCCCCCccEEEEEEcCccEEEEcceEec
Confidence 0111111110 011223344557899999999998721 122 22346889999999998
Q ss_pred CCCCCCCCeeeeeCcccEEEEccEEecCCceEEeCCCceeEEEEeeEEcCC---ceEEEeecccCcCcccccCcEEEEEE
Q 047322 187 PSWSPNTDGIHIQSSSGITISNSAIMTGDDCISVGPGTKNLWIERIACGPG---HGIRMKKALAALGPMLLKMVLKNVTV 263 (343)
Q Consensus 187 ~~~~~~~DGi~~~~s~nv~I~n~~i~~~dD~i~i~~~~~ni~i~n~~~~~~---~gi~i~~~~gs~g~~~~~~~~~ni~i 263 (343)
.++ -+... ..+-.++||+|...=|-|. +.-...++||.+..- .|.-. ..+.. ....-....|
T Consensus 198 ~QD-----TLy~~-~gR~yf~~CyIeG~VDFIF---G~g~A~Fe~C~I~s~~~~~G~IT-----A~~r~-~~~~~~GfvF 262 (359)
T PLN02671 198 AQD-----TLLDE-TGSHYFYQCYIQGSVDFIF---GNAKSLYQDCVIQSTAKRSGAIA-----AHHRD-SPTEDTGFSF 262 (359)
T ss_pred ccc-----ccEeC-CCcEEEEecEEEEeccEEe---cceeEEEeccEEEEecCCCeEEE-----eeccC-CCCCCccEEE
Confidence 554 23322 3467899999998766553 345789999998632 24222 11111 1123467899
Q ss_pred EceEEeCCceEEEEEeecCCCCceEEeEEEEeEEEecC
Q 047322 264 TDSIFTGTQNGVRIKTWARPSNGFARNIRFRNIIMTKV 301 (343)
Q Consensus 264 ~n~~~~~~~~gi~i~~~~~~~~g~i~nI~~~ni~~~~~ 301 (343)
.||++... ..+.+.-. =+.-..+.|.|..|.+.
T Consensus 263 ~~C~itg~-g~vyLGRP----W~~yarvVf~~t~m~~~ 295 (359)
T PLN02671 263 VNCVINGT-GKIYLGRA----WGNYSRTVYSNCFIADI 295 (359)
T ss_pred EccEEccC-ccEEEeCC----CCCCceEEEEecccCCe
Confidence 99999764 23444411 12236788999888764
No 54
>PLN02713 Probable pectinesterase/pectinesterase inhibitor
Probab=97.86 E-value=0.0015 Score=65.09 Aligned_cols=208 Identities=14% Similarity=0.060 Sum_probs=120.4
Q ss_pred HHHHHHHHHHhhhc----CCCcEEEEcCcEEEEEeEEecCCCcccEEEEEeeEEEecCCcCCcCCCcceEEEEeeeeEEE
Q 047322 42 TQAFLRAWSSACYS----NSPATLHVPRGLFLVKSISFNGPCRHRIVFQIDGTIIAPSSYWSLGNSGFWILFYKVNRLSI 117 (343)
Q Consensus 42 t~Aiq~Ai~~a~~~----~~g~~V~ip~G~Y~~~~l~l~~~~ks~~~l~~~g~l~~~~~~~~~~~~~~~i~~~~~~ni~I 117 (343)
=.-||+||+++... ...-+|+|.+|+|. ..+.+... |.+++|.++|. ....|
T Consensus 262 f~TIq~Av~a~p~~~~~~~~~~vI~Ik~G~Y~-E~V~i~~~-k~~i~l~G~g~----------------------~~TiI 317 (566)
T PLN02713 262 FTTINDAVAAAPNNTDGSNGYFVIYVTAGVYE-EYVSIPKN-KKYLMMIGDGI----------------------NQTVI 317 (566)
T ss_pred CCCHHHHHHhhhcccCCCCceEEEEEcCcEEE-EEEEecCC-CceEEEEecCC----------------------CCcEE
Confidence 56799999765322 12247999999997 44555322 56777776651 11112
Q ss_pred Ec--ceEeCCCCccccccCCCCCCCCCceEEEEEecCcEEEEeeEEecCCc----cEEE-EeceecEEEEeEEEECCCCC
Q 047322 118 HG--GTIDATGAGYWACRKSGKSCPPPTRSISFVGASNIVVSGLTSINSRF----FHIA-IDECVNIMLRKLKINAPSWS 190 (343)
Q Consensus 118 ~G--G~idg~g~~~w~~~~~~~~~~~~~~~i~~~~~~nv~i~~v~i~n~~~----~~i~-~~~~~~v~i~~~~i~~~~~~ 190 (343)
.+ -..+|.+ ..+.. -.....+++..++++|+|... ..+- -..++...+.+|+|.+.++
T Consensus 318 t~~~~~~~g~~-------------T~~Sa-T~~v~~~~F~a~nitf~Ntag~~~~QAVAlrv~~D~~~fy~C~~~G~QD- 382 (566)
T PLN02713 318 TGNRSVVDGWT-------------TFNSA-TFAVVGQNFVAVNITFRNTAGPAKHQAVALRSGADLSTFYSCSFEAYQD- 382 (566)
T ss_pred EcCCcccCCCc-------------cccce-eEEEECCCeEEEeeEEEeCCCCCCCceEEEEecCCcEEEEeeeeccCCc-
Confidence 22 0011100 01122 333457999999999999633 2222 3457889999999998553
Q ss_pred CCCCeeeeeCcccEEEEccEEecCCceEEeCCCceeEEEEeeEEcCC------ceEEEeecccCcCcccccCcEEEEEEE
Q 047322 191 PNTDGIHIQSSSGITISNSAIMTGDDCISVGPGTKNLWIERIACGPG------HGIRMKKALAALGPMLLKMVLKNVTVT 264 (343)
Q Consensus 191 ~~~DGi~~~~s~nv~I~n~~i~~~dD~i~i~~~~~ni~i~n~~~~~~------~gi~i~~~~gs~g~~~~~~~~~ni~i~ 264 (343)
-+.... .+-.+++|+|...=|-| -|.-.+.++||.+..- .+. | ...|.. +...-..+.|.
T Consensus 383 ----TLy~~~-~Rqyy~~C~I~GtVDFI---FG~a~avfq~C~i~~~~~~~~~~~~-i----TAq~r~-~~~~~~G~vf~ 448 (566)
T PLN02713 383 ----TLYTHS-LRQFYRECDIYGTVDFI---FGNAAVVFQNCNLYPRLPMQGQFNT-I----TAQGRT-DPNQNTGTSIQ 448 (566)
T ss_pred ----ceEECC-CCEEEEeeEEeccccee---cccceEEEeccEEEEecCCCCCcce-e----eecCCC-CCCCCCEEEEE
Confidence 344433 56789999998766644 2456889999998531 131 2 112221 12335689999
Q ss_pred ceEEeCCceEE----EEEeecCCCCceEEeEEEEeEEEecCC
Q 047322 265 DSIFTGTQNGV----RIKTWARPSNGFARNIRFRNIIMTKVF 302 (343)
Q Consensus 265 n~~~~~~~~gi----~i~~~~~~~~g~i~nI~~~ni~~~~~~ 302 (343)
||++.....-. ..+.+=|-+=..-..+.|.+..|.+.-
T Consensus 449 ~c~i~~~~~~~~~~~~~~~yLGRPW~~ysr~V~~~s~~~~~I 490 (566)
T PLN02713 449 NCTIKAADDLASSNYTVKTYLGRPWKEYSRTVVMQSYIDGLI 490 (566)
T ss_pred cCEEecCCcccccccccceeeecCCCCcceEEEEecccCCee
Confidence 99998753211 111111101123567888888887653
No 55
>PLN02933 Probable pectinesterase/pectinesterase inhibitor
Probab=97.86 E-value=0.0037 Score=61.66 Aligned_cols=208 Identities=12% Similarity=0.106 Sum_probs=122.4
Q ss_pred hHHHHHHHHHHhhhc-CCCcEEEEcCcEEEEEeEEecCCCcccEEEEEeeEEEecCCcCCcCCCcceEEEEeeeeEEEEc
Q 047322 41 ATQAFLRAWSSACYS-NSPATLHVPRGLFLVKSISFNGPCRHRIVFQIDGTIIAPSSYWSLGNSGFWILFYKVNRLSIHG 119 (343)
Q Consensus 41 dt~Aiq~Ai~~a~~~-~~g~~V~ip~G~Y~~~~l~l~~~~ks~~~l~~~g~l~~~~~~~~~~~~~~~i~~~~~~ni~I~G 119 (343)
|=.-||+||+++... ...-+|+|.+|+|. ..+.+... |.+++|..+|. ....|.+
T Consensus 229 ~f~TIq~Ai~a~P~~~~~r~vI~Ik~GvY~-E~V~I~~~-k~~itl~G~g~----------------------~~TiIt~ 284 (530)
T PLN02933 229 NFTTINEAVSAAPNSSETRFIIYIKGGEYF-ENVELPKK-KTMIMFIGDGI----------------------GKTVIKA 284 (530)
T ss_pred CccCHHHHHHhchhcCCCcEEEEEcCceEE-EEEEecCC-CceEEEEEcCC----------------------CCcEEEe
Confidence 356799999865332 22457999999998 55566433 56777776652 0111111
Q ss_pred --ceEeCCCCccccccCCCCCCCCCceEEEEEecCcEEEEeeEEecCCc----cEEEE-eceecEEEEeEEEECCCCCCC
Q 047322 120 --GTIDATGAGYWACRKSGKSCPPPTRSISFVGASNIVVSGLTSINSRF----FHIAI-DECVNIMLRKLKINAPSWSPN 192 (343)
Q Consensus 120 --G~idg~g~~~w~~~~~~~~~~~~~~~i~~~~~~nv~i~~v~i~n~~~----~~i~~-~~~~~v~i~~~~i~~~~~~~~ 192 (343)
...+| |. .....-.....+++..++++|.|... ..+-+ ..++...+.+|+|.+.++
T Consensus 285 ~~~~~dg-----~~---------T~~SaT~~v~a~~F~a~nitf~Ntag~~~~QAVAlrv~~Dra~fy~C~f~G~QD--- 347 (530)
T PLN02933 285 NRSRIDG-----WS---------TFQTATVGVKGKGFIAKDISFVNYAGPAKHQAVALRSGSDHSAFYRCEFDGYQD--- 347 (530)
T ss_pred CCccCCC-----Cc---------cccceEEEEECCCEEEEeeEEEECCCCCCCceEEEEEcCCcEEEEEeEEEeccc---
Confidence 00011 00 01122344567899999999998643 22332 457889999999998554
Q ss_pred CCeeeeeCcccEEEEccEEecCCceEEeCCCceeEEEEeeEEcCC------ceEEEeecccCcCcccccCcEEEEEEEce
Q 047322 193 TDGIHIQSSSGITISNSAIMTGDDCISVGPGTKNLWIERIACGPG------HGIRMKKALAALGPMLLKMVLKNVTVTDS 266 (343)
Q Consensus 193 ~DGi~~~~s~nv~I~n~~i~~~dD~i~i~~~~~ni~i~n~~~~~~------~gi~i~~~~gs~g~~~~~~~~~ni~i~n~ 266 (343)
-+... ..+-.+++|+|...=|-| -|.-...++||.+..- .+. | ...+.. ....-..+.|.||
T Consensus 348 --TLy~~-~~Rqyy~~C~IeGtVDFI---FG~a~avFq~C~i~~~~~~~~~~~~-i----TAq~r~-~~~~~tGfvf~~C 415 (530)
T PLN02933 348 --TLYVH-SAKQFYRECDIYGTIDFI---FGNAAVVFQNCSLYARKPNPNHKIA-F----TAQSRN-QSDQPTGISIISS 415 (530)
T ss_pred --ccccC-CCceEEEeeEEeccccee---ccCceEEEeccEEEEeccCCCCceE-E----EecCCC-CCCCCceEEEEee
Confidence 34333 246789999999866644 2345789999988521 232 2 112221 1223468999999
Q ss_pred EEeCCce--------EEEEEeecCCCCceEEeEEEEeEEEecCCeeE
Q 047322 267 IFTGTQN--------GVRIKTWARPSNGFARNIRFRNIIMTKVFNPI 305 (343)
Q Consensus 267 ~~~~~~~--------gi~i~~~~~~~~g~i~nI~~~ni~~~~~~~~i 305 (343)
.+..... -.+++- +=..-..+.|.+..|.+.=.|-
T Consensus 416 ~it~~~~~~~~~~~~~~yLGR----PW~~ysrvVf~~s~l~~~I~p~ 458 (530)
T PLN02933 416 RILAAPDLIPVKENFKAYLGR----PWRKYSRTVIIKSFIDDLIHPA 458 (530)
T ss_pred EEecCCcccccccccceEecc----CCCCCceEEEEecccCCeeccc
Confidence 9987422 122221 1123568889999887654443
No 56
>PLN02506 putative pectinesterase/pectinesterase inhibitor
Probab=97.85 E-value=0.0021 Score=63.64 Aligned_cols=206 Identities=15% Similarity=0.127 Sum_probs=119.4
Q ss_pred hHHHHHHHHHHhhhc-CCCcEEEEcCcEEEEEeEEecCCCcccEEEEEeeEEEecCCcCCcCCCcceEEEEeeeeEEEEc
Q 047322 41 ATQAFLRAWSSACYS-NSPATLHVPRGLFLVKSISFNGPCRHRIVFQIDGTIIAPSSYWSLGNSGFWILFYKVNRLSIHG 119 (343)
Q Consensus 41 dt~Aiq~Ai~~a~~~-~~g~~V~ip~G~Y~~~~l~l~~~~ks~~~l~~~g~l~~~~~~~~~~~~~~~i~~~~~~ni~I~G 119 (343)
|=.-||+||+++... ...-+|+|.+|+|. ..+.+... |.+++|..+|. ....|.+
T Consensus 243 ~f~TIq~Av~a~p~~~~~r~vI~Vk~GvY~-E~V~I~~~-k~~i~l~G~g~----------------------~~tiIt~ 298 (537)
T PLN02506 243 HYRTITEAINEAPNHSNRRYIIYVKKGVYK-ENIDMKKK-KTNIMLVGDGI----------------------GQTVVTG 298 (537)
T ss_pred CccCHHHHHHhchhcCCCcEEEEEeCCeee-EEEeccCC-CceEEEEEcCC----------------------CCeEEEe
Confidence 356799999765332 23458999999997 33344322 46677766642 0111111
Q ss_pred ceEeCCCCccccccCCCCCCCCCceEEEEEecCcEEEEeeEEecCCc----cEEE-EeceecEEEEeEEEECCCCCCCCC
Q 047322 120 GTIDATGAGYWACRKSGKSCPPPTRSISFVGASNIVVSGLTSINSRF----FHIA-IDECVNIMLRKLKINAPSWSPNTD 194 (343)
Q Consensus 120 G~idg~g~~~w~~~~~~~~~~~~~~~i~~~~~~nv~i~~v~i~n~~~----~~i~-~~~~~~v~i~~~~i~~~~~~~~~D 194 (343)
..-...| | ......-.....+++..++++|+|... ..+- ....+.+.+.+|+|.+.++
T Consensus 299 ~~~~~~g---~---------~T~~saT~~v~~~~F~a~nit~~Ntag~~~~QAVAl~v~~D~~~fy~C~~~G~QD----- 361 (537)
T PLN02506 299 NRNFMQG---W---------TTFRTATVAVSGRGFIARDITFRNTAGPQNHQAVALRVDSDQSAFYRCSMEGYQD----- 361 (537)
T ss_pred CccccCC---C---------CcccceEEEEEcCCeEEEeeEEEeCCCCCCCceEEEEecCCcEEEEcceeecccc-----
Confidence 0000001 0 001122344568999999999998742 2222 2457889999999998554
Q ss_pred eeeeeCcccEEEEccEEecCCceEEeCCCceeEEEEeeEEcCC-----ceEEEeecccCcCcccccCcEEEEEEEceEEe
Q 047322 195 GIHIQSSSGITISNSAIMTGDDCISVGPGTKNLWIERIACGPG-----HGIRMKKALAALGPMLLKMVLKNVTVTDSIFT 269 (343)
Q Consensus 195 Gi~~~~s~nv~I~n~~i~~~dD~i~i~~~~~ni~i~n~~~~~~-----~gi~i~~~~gs~g~~~~~~~~~ni~i~n~~~~ 269 (343)
-+.... .+-..++|+|...=|-| + |.-...++||.+..- ..-.| ...|... ...-..+.|.||++.
T Consensus 362 TLy~~~-~rqyy~~C~I~GtVDFI-F--G~a~avfq~C~i~~r~~~~~~~~~i----TA~~r~~-~~~~~G~vf~~c~i~ 432 (537)
T PLN02506 362 TLYAHS-LRQFYRECEIYGTIDFI-F--GNGAAVLQNCKIYTRVPLPLQKVTI----TAQGRKS-PHQSTGFSIQDSYVL 432 (537)
T ss_pred cceecC-CceEEEeeEEecccceE-c--cCceeEEeccEEEEccCCCCCCceE----EccCCCC-CCCCcEEEEEcCEEc
Confidence 343332 46789999999866654 2 345789999998631 11122 1223221 223467999999987
Q ss_pred CCceEEEEEeecCCCCceEEeEEEEeEEEecC
Q 047322 270 GTQNGVRIKTWARPSNGFARNIRFRNIIMTKV 301 (343)
Q Consensus 270 ~~~~gi~i~~~~~~~~g~i~nI~~~ni~~~~~ 301 (343)
... ..+++- +=+.-..+.|.+..+.+.
T Consensus 433 ~~~-~~yLGR----PW~~~sr~v~~~t~l~~~ 459 (537)
T PLN02506 433 ATQ-PTYLGR----PWKQYSRTVFMNTYMSQL 459 (537)
T ss_pred cCC-ceEEec----CCCCCceEEEEecCCCCe
Confidence 642 344441 112346788888888764
No 57
>PLN02995 Probable pectinesterase/pectinesterase inhibitor
Probab=97.84 E-value=0.0022 Score=63.58 Aligned_cols=214 Identities=15% Similarity=0.116 Sum_probs=122.9
Q ss_pred hHHHHHHHHHHhhh---cCCCcEEEEcCcEEEEEeEEecCCCcccEEEEEeeEEEecCCcCCcCCCcceEEEEeeeeEEE
Q 047322 41 ATQAFLRAWSSACY---SNSPATLHVPRGLFLVKSISFNGPCRHRIVFQIDGTIIAPSSYWSLGNSGFWILFYKVNRLSI 117 (343)
Q Consensus 41 dt~Aiq~Ai~~a~~---~~~g~~V~ip~G~Y~~~~l~l~~~~ks~~~l~~~g~l~~~~~~~~~~~~~~~i~~~~~~ni~I 117 (343)
|=.-||+||+++.. ....-+|+|.+|+|.= .+.+... |.+++|.++|. ....|
T Consensus 234 ~f~TIq~Ai~a~p~~~~~~~r~vI~Ik~G~Y~E-~V~i~~~-k~~i~l~G~g~----------------------~~TvI 289 (539)
T PLN02995 234 HFNTVQAAIDVAGRRKVTSGRFVIYVKRGIYQE-NINVRLN-NDDIMLVGDGM----------------------RSTII 289 (539)
T ss_pred CccCHHHHHHhcccccCCCceEEEEEeCCEeEE-EEEecCC-CCcEEEEEcCC----------------------CCeEE
Confidence 45679999986532 1234678999999973 3444322 57888877752 01111
Q ss_pred EcceEeCCCCccccccCCCCCCCCCceEEEEEecCcEEEEeeEEecCCc----cEEE-EeceecEEEEeEEEECCCCCCC
Q 047322 118 HGGTIDATGAGYWACRKSGKSCPPPTRSISFVGASNIVVSGLTSINSRF----FHIA-IDECVNIMLRKLKINAPSWSPN 192 (343)
Q Consensus 118 ~GG~idg~g~~~w~~~~~~~~~~~~~~~i~~~~~~nv~i~~v~i~n~~~----~~i~-~~~~~~v~i~~~~i~~~~~~~~ 192 (343)
.+..-.+.+ | ......-.....+++..++++|+|... ..+- ....+...+.+|+|.+.++
T Consensus 290 t~~~~~~~~--~----------~T~~SaT~~v~~~~F~a~nitf~Ntag~~~~QAVAlrv~~Dr~~f~~c~~~G~QD--- 354 (539)
T PLN02995 290 TGGRSVKGG--Y----------TTYNSATAGIEGLHFIAKGITFRNTAGPAKGQAVALRSSSDLSIFYKCSIEGYQD--- 354 (539)
T ss_pred EeCCccCCC--C----------cccceEEEEEECCCeEEEeeEEEeCCCCCCCceEEEEEcCCceeEEcceEecccc---
Confidence 110000000 0 001122333457899999999998743 2232 3457889999999998554
Q ss_pred CCeeeeeCcccEEEEccEEecCCceEEeCCCceeEEEEeeEEcCC------ceEEEeecccCcCcccccCcEEEEEEEce
Q 047322 193 TDGIHIQSSSGITISNSAIMTGDDCISVGPGTKNLWIERIACGPG------HGIRMKKALAALGPMLLKMVLKNVTVTDS 266 (343)
Q Consensus 193 ~DGi~~~~s~nv~I~n~~i~~~dD~i~i~~~~~ni~i~n~~~~~~------~gi~i~~~~gs~g~~~~~~~~~ni~i~n~ 266 (343)
-+... ..+-..++|+|...=|-|. |.-...++||.+..- .| .| ...|.. ....-..+.|.||
T Consensus 355 --TLy~~-~~Rqyy~~C~I~GtVDFIF---G~a~avf~~C~i~~~~~~~~~~~-~i----TA~~r~-~~~~~~G~vf~~c 422 (539)
T PLN02995 355 --TLMVH-SQRQFYRECYIYGTVDFIF---GNAAAVFQNCIILPRRPLKGQAN-VI----TAQGRA-DPFQNTGISIHNS 422 (539)
T ss_pred --hhccC-CCceEEEeeEEeeccceEe---cccceEEeccEEEEecCCCCCcc-eE----ecCCCC-CCCCCceEEEEee
Confidence 23332 2467899999998666542 345789999988531 23 22 222321 1223478999999
Q ss_pred EEeCCceEE----EEEeecCCCCceEEeEEEEeEEEecCCeeE
Q 047322 267 IFTGTQNGV----RIKTWARPSNGFARNIRFRNIIMTKVFNPI 305 (343)
Q Consensus 267 ~~~~~~~gi----~i~~~~~~~~g~i~nI~~~ni~~~~~~~~i 305 (343)
++....... ..+.+=|-+=..-..+.|.+..+.+.-.|.
T Consensus 423 ~i~~~~~~~~~~~~~~~yLGRPW~~ysrvv~~~t~~~~~I~p~ 465 (539)
T PLN02995 423 RILPAPDLKPVVRTVKTYMGRPWMKFSRTVVLQTYLDNVVSPV 465 (539)
T ss_pred EEecCCcccccccccceeccCCCCCCcceEEEeccccCccccc
Confidence 998753211 011111101123567889999997754443
No 58
>PLN02304 probable pectinesterase
Probab=97.84 E-value=0.0048 Score=58.19 Aligned_cols=203 Identities=14% Similarity=0.074 Sum_probs=117.7
Q ss_pred HHHHHHHHHHhhhc-CCCcEEEEcCcEEEEEeEEecCCCcccEEEEEeeEEEecCCcCCcCCCcceEEEEeeeeEEEEc-
Q 047322 42 TQAFLRAWSSACYS-NSPATLHVPRGLFLVKSISFNGPCRHRIVFQIDGTIIAPSSYWSLGNSGFWILFYKVNRLSIHG- 119 (343)
Q Consensus 42 t~Aiq~Ai~~a~~~-~~g~~V~ip~G~Y~~~~l~l~~~~ks~~~l~~~g~l~~~~~~~~~~~~~~~i~~~~~~ni~I~G- 119 (343)
=.-||+||+++.+. ...-+|+|.+|+|. ..+.+... |++++|..+|.- ...|...+.. -.+
T Consensus 87 f~TIQ~AIdavP~~~~~r~vI~Ik~GvY~-EkV~Ip~~-K~~Itl~G~g~~------------~TiIt~~~~a---~~~~ 149 (379)
T PLN02304 87 FTTVQSAVDAVGNFSQKRNVIWINSGIYY-EKVTVPKT-KPNITFQGQGFD------------STAIAWNDTA---KSAN 149 (379)
T ss_pred ccCHHHHHhhCcccCCCcEEEEEeCeEeE-EEEEECCC-CCcEEEEecCCC------------CcEEEccCcc---cCCC
Confidence 55799999865322 23457889999997 44555322 578888777520 0011100000 000
Q ss_pred ceEeCCCCccccccCCCCCCCCCceEEEEEecCcEEEEeeEEecCCc---------cEE-EEeceecEEEEeEEEECCCC
Q 047322 120 GTIDATGAGYWACRKSGKSCPPPTRSISFVGASNIVVSGLTSINSRF---------FHI-AIDECVNIMLRKLKINAPSW 189 (343)
Q Consensus 120 G~idg~g~~~w~~~~~~~~~~~~~~~i~~~~~~nv~i~~v~i~n~~~---------~~i-~~~~~~~v~i~~~~i~~~~~ 189 (343)
|+. ...-.....+++..++++|+|+.. ..+ .....+...+.+|+|.+.++
T Consensus 150 gT~--------------------~SaTv~v~a~~F~a~nITf~Nta~~~~~g~~~~QAVAL~v~gDra~fy~C~f~G~QD 209 (379)
T PLN02304 150 GTF--------------------YSASVQVFASNFIAKNISFMNVAPIPKPGDVGAQAVAIRIAGDQAAFWGCGFFGAQD 209 (379)
T ss_pred Ccc--------------------ceEEEEEECCCeEEEeeEEEecCCCCCCCCCCccEEEEEecCCcEEEEeceEecccc
Confidence 111 112333457899999999998631 122 23457889999999998554
Q ss_pred CCCCCeeeeeCcccEEEEccEEecCCceEEeCCCceeEEEEeeEEcCC-----------ceEEEeecccCcCcccccCcE
Q 047322 190 SPNTDGIHIQSSSGITISNSAIMTGDDCISVGPGTKNLWIERIACGPG-----------HGIRMKKALAALGPMLLKMVL 258 (343)
Q Consensus 190 ~~~~DGi~~~~s~nv~I~n~~i~~~dD~i~i~~~~~ni~i~n~~~~~~-----------~gi~i~~~~gs~g~~~~~~~~ 258 (343)
-+... ..+..++||+|...=|-|. +.-...++||.+..- .|.-. ..+.. ....-
T Consensus 210 -----TLy~~-~gR~Yf~~CyIeG~VDFIF---G~g~A~Fe~C~I~s~~~~~~~g~~~~~G~IT-----A~~Rt-~~~~~ 274 (379)
T PLN02304 210 -----TLHDD-RGRHYFKDCYIQGSIDFIF---GDARSLYENCRLISMANPVPPGSKSINGAVT-----AHGRT-SKDEN 274 (379)
T ss_pred -----eeEeC-CCCEEEEeeEEcccccEEe---ccceEEEEccEEEEecCCcccccccCceEEE-----ecCCC-CCCCC
Confidence 34332 3468899999998666542 345778999988631 23222 11111 12334
Q ss_pred EEEEEEceEEeCCceEEEEEeecCCCCceEEeEEEEeEEEecC
Q 047322 259 KNVTVTDSIFTGTQNGVRIKTWARPSNGFARNIRFRNIIMTKV 301 (343)
Q Consensus 259 ~ni~i~n~~~~~~~~gi~i~~~~~~~~g~i~nI~~~ni~~~~~ 301 (343)
.-..|.||++... .-+.+.- .=..-..+.|.+..|.+.
T Consensus 275 ~GfvF~~C~itg~-g~vyLGR----PW~pysrvVf~~t~m~~~ 312 (379)
T PLN02304 275 TGFSFVNCTIGGT-GRIWLGR----AWRPYSRVVFAYTSMTDI 312 (379)
T ss_pred ceEEEECCEEccC-cceeecC----CCCCcceEEEEecccCCE
Confidence 6788999998764 2344431 112346788888888664
No 59
>PLN02201 probable pectinesterase/pectinesterase inhibitor
Probab=97.82 E-value=0.0038 Score=61.55 Aligned_cols=207 Identities=12% Similarity=0.084 Sum_probs=122.6
Q ss_pred hHHHHHHHHHHhhhc-CCCcEEEEcCcEEEEEeEEecCCCcccEEEEEeeEEEecCCcCCcCCCcceEEEEeeeeEEEEc
Q 047322 41 ATQAFLRAWSSACYS-NSPATLHVPRGLFLVKSISFNGPCRHRIVFQIDGTIIAPSSYWSLGNSGFWILFYKVNRLSIHG 119 (343)
Q Consensus 41 dt~Aiq~Ai~~a~~~-~~g~~V~ip~G~Y~~~~l~l~~~~ks~~~l~~~g~l~~~~~~~~~~~~~~~i~~~~~~ni~I~G 119 (343)
|=..||+||+++... ...-+|+|.+|+|. ..+.+... |.+++|..+|. ....|.+
T Consensus 217 ~f~TIq~Ai~a~P~~~~~r~vI~Ik~GvY~-E~V~I~~~-k~~i~l~G~g~----------------------~~TiIt~ 272 (520)
T PLN02201 217 NFTTIMDAVLAAPDYSTKRYVIYIKKGVYL-ENVEIKKK-KWNIMMVGDGI----------------------DATVITG 272 (520)
T ss_pred CccCHHHHHHhchhcCCCcEEEEEeCceeE-EEEEecCC-CceEEEEecCC----------------------CCcEEEe
Confidence 456899999765322 23458999999997 44555322 46777776652 0111111
Q ss_pred --ceEeCCCCccccccCCCCCCCCCceEEEEEecCcEEEEeeEEecCCc----cEEEE-eceecEEEEeEEEECCCCCCC
Q 047322 120 --GTIDATGAGYWACRKSGKSCPPPTRSISFVGASNIVVSGLTSINSRF----FHIAI-DECVNIMLRKLKINAPSWSPN 192 (343)
Q Consensus 120 --G~idg~g~~~w~~~~~~~~~~~~~~~i~~~~~~nv~i~~v~i~n~~~----~~i~~-~~~~~v~i~~~~i~~~~~~~~ 192 (343)
...+|.+ .....-.....+++..++++|+|... ..+-+ ...+...+.+|+|.+.++
T Consensus 273 ~~~~~~g~~--------------T~~SAT~~v~~~~F~a~nitf~Ntag~~~~QAVAlrv~~D~~~fy~C~f~G~QD--- 335 (520)
T PLN02201 273 NRSFIDGWT--------------TFRSATFAVSGRGFIARDITFQNTAGPEKHQAVALRSDSDLSVFYRCAMRGYQD--- 335 (520)
T ss_pred CCccCCCCc--------------ccceEEEEEECCCeEEEeeEEEECCCCCCCceEEEEEcCCcEEEEeeeeeccCC---
Confidence 0001100 01122334458899999999998743 22322 447889999999998543
Q ss_pred CCeeeeeCcccEEEEccEEecCCceEEeCCCceeEEEEeeEEcCC------ceEEEeecccCcCcccccCcEEEEEEEce
Q 047322 193 TDGIHIQSSSGITISNSAIMTGDDCISVGPGTKNLWIERIACGPG------HGIRMKKALAALGPMLLKMVLKNVTVTDS 266 (343)
Q Consensus 193 ~DGi~~~~s~nv~I~n~~i~~~dD~i~i~~~~~ni~i~n~~~~~~------~gi~i~~~~gs~g~~~~~~~~~ni~i~n~ 266 (343)
-+.... .+-..++|+|...=|-|. |.-...++||.+..- .|.-. ..+.. +...-..+.|.||
T Consensus 336 --TLy~~~-~Rqyy~~C~I~GtVDFIF---G~a~avf~~C~i~~~~~~~~~~~~iT-----Aq~r~-~~~~~~Gfvf~~C 403 (520)
T PLN02201 336 --TLYTHT-MRQFYRECRITGTVDFIF---GDATAVFQNCQILAKKGLPNQKNTIT-----AQGRK-DPNQPTGFSIQFS 403 (520)
T ss_pred --eeEeCC-CCEEEEeeEEeecccEEe---cCceEEEEccEEEEecCCCCCCceEE-----ecCCC-CCCCCcEEEEEee
Confidence 344433 467889999998766552 345789999988631 23221 12221 1234567999999
Q ss_pred EEeCCce--------EEEEEeecCCCCceEEeEEEEeEEEecCCee
Q 047322 267 IFTGTQN--------GVRIKTWARPSNGFARNIRFRNIIMTKVFNP 304 (343)
Q Consensus 267 ~~~~~~~--------gi~i~~~~~~~~g~i~nI~~~ni~~~~~~~~ 304 (343)
++..... ..+++- +=..-+.+.|.+..|.+.=.|
T Consensus 404 ~it~~~~~~~~~~~~~~yLGR----PW~~ysrvv~~~t~l~~~I~p 445 (520)
T PLN02201 404 NISADTDLLPYLNTTATYLGR----PWKLYSRTVFMQNYMSDAIRP 445 (520)
T ss_pred EEecCccccccccccceEeec----CCCCCceEEEEecCcCCeEcc
Confidence 9987432 122321 113357888999988775333
No 60
>PLN02488 probable pectinesterase/pectinesterase inhibitor
Probab=97.76 E-value=0.0076 Score=58.86 Aligned_cols=213 Identities=10% Similarity=0.026 Sum_probs=121.7
Q ss_pred hHHHHHHHHHHhhhc-CCCcEEEEcCcEEEEEeEEecCCCcccEEEEEeeEEEecCCcCCcCCCcceEEEEeeeeEEEEc
Q 047322 41 ATQAFLRAWSSACYS-NSPATLHVPRGLFLVKSISFNGPCRHRIVFQIDGTIIAPSSYWSLGNSGFWILFYKVNRLSIHG 119 (343)
Q Consensus 41 dt~Aiq~Ai~~a~~~-~~g~~V~ip~G~Y~~~~l~l~~~~ks~~~l~~~g~l~~~~~~~~~~~~~~~i~~~~~~ni~I~G 119 (343)
|=.-||+||+++... ...-+|+|.+|+|. ..+.+... |.+++|..+|. ....|.+
T Consensus 208 ~f~TIq~AI~a~P~~~~~r~vI~Ik~GvY~-E~V~I~~~-k~nItliGdg~----------------------~~TiIt~ 263 (509)
T PLN02488 208 KYNTVNAAIAAAPEHSRKRFVIYIKTGVYD-EIVRIGST-KPNLTLIGDGQ----------------------DSTIITG 263 (509)
T ss_pred CccCHHHHHHhchhcCCCcEEEEEeCCeeE-EEEEecCC-CccEEEEecCC----------------------CceEEEE
Confidence 456799999765332 22458999999997 44555322 56788877752 0011111
Q ss_pred ceEeCCCCccccccCCCCCCCCCceEEEEEecCcEEEEeeEEecCCc----cEEE-EeceecEEEEeEEEECCCCCCCCC
Q 047322 120 GTIDATGAGYWACRKSGKSCPPPTRSISFVGASNIVVSGLTSINSRF----FHIA-IDECVNIMLRKLKINAPSWSPNTD 194 (343)
Q Consensus 120 G~idg~g~~~w~~~~~~~~~~~~~~~i~~~~~~nv~i~~v~i~n~~~----~~i~-~~~~~~v~i~~~~i~~~~~~~~~D 194 (343)
..--..|. ..-..+-.....+++..++++|+|... ..+- -..++...+.+|.|...++
T Consensus 264 n~~~~~g~------------~T~~SATv~v~g~gF~A~nitf~Ntag~~~~QAVALrv~~Dra~Fy~C~f~GyQD----- 326 (509)
T PLN02488 264 NLSASNGK------------RTFYTATVASNGDGFIGIDMCFRNTAGPAKGPAVALRVSGDMSVIYRCRIEGYQD----- 326 (509)
T ss_pred cccccCCC------------CceeeEEEEEEcCCeEEEeeEEEECCCCCCCceEEEEecCCcEEEEcceeeccCc-----
Confidence 00000010 000112333457889999999998643 2232 2457889999999998554
Q ss_pred eeeeeCcccEEEEccEEecCCceEEeCCCceeEEEEeeEEcCC------ceEEEeecccCcCcccccCcEEEEEEEceEE
Q 047322 195 GIHIQSSSGITISNSAIMTGDDCISVGPGTKNLWIERIACGPG------HGIRMKKALAALGPMLLKMVLKNVTVTDSIF 268 (343)
Q Consensus 195 Gi~~~~s~nv~I~n~~i~~~dD~i~i~~~~~ni~i~n~~~~~~------~gi~i~~~~gs~g~~~~~~~~~ni~i~n~~~ 268 (343)
-+... +.+-.+++|+|...=|-|. |.-.+.++||.+..- .+ .| ...|.. ....-..+.|.||++
T Consensus 327 TLy~~-~~RqyyrdC~I~GtVDFIF---G~a~avFq~C~I~sr~~~~~~~~-~I----TAq~R~-~~~~~tGfvf~~C~i 396 (509)
T PLN02488 327 ALYPH-RDRQFYRECFITGTVDFIC---GNAAAVFQFCQIVARQPMMGQSN-VI----TAQSRE-SKDDNSGFSIQKCNI 396 (509)
T ss_pred ceeeC-CCCEEEEeeEEeeccceEe---cceEEEEEccEEEEecCCCCCCE-EE----EeCCCC-CCCCCcEEEEEeeEE
Confidence 34333 3578899999998766553 456889999998631 23 22 222221 122346799999999
Q ss_pred eCCceEEE----EEeecCCCCceEEeEEEEeEEEecCCee
Q 047322 269 TGTQNGVR----IKTWARPSNGFARNIRFRNIIMTKVFNP 304 (343)
Q Consensus 269 ~~~~~gi~----i~~~~~~~~g~i~nI~~~ni~~~~~~~~ 304 (343)
.......- .+++=|-+=..-+.+.|.+..+.+.=.|
T Consensus 397 t~~~~~~~~~~~~~~YLGRPW~~ySrvVf~~s~i~~~I~P 436 (509)
T PLN02488 397 TASSDLDPVKATVKTYLGRPWRKYSTVAVLQSFIGDLVDP 436 (509)
T ss_pred ecCCcccccccccceeecCCCCCCccEEEEeccCCCeecc
Confidence 87542111 1222120112356778888888764333
No 61
>PLN02416 probable pectinesterase/pectinesterase inhibitor
Probab=97.73 E-value=0.0044 Score=61.57 Aligned_cols=208 Identities=13% Similarity=0.081 Sum_probs=119.3
Q ss_pred hHHHHHHHHHHhhhcC-CCcEEEEcCcEEEEEeEEecCCCcccEEEEEeeEEEecCCcCCcCCCcceEEEEeeeeEEEEc
Q 047322 41 ATQAFLRAWSSACYSN-SPATLHVPRGLFLVKSISFNGPCRHRIVFQIDGTIIAPSSYWSLGNSGFWILFYKVNRLSIHG 119 (343)
Q Consensus 41 dt~Aiq~Ai~~a~~~~-~g~~V~ip~G~Y~~~~l~l~~~~ks~~~l~~~g~l~~~~~~~~~~~~~~~i~~~~~~ni~I~G 119 (343)
|=.-||+||+++.... ..-+|+|.+|+|. ..+.+... |.+++|.++|. ....|.+
T Consensus 241 ~f~TIq~Ai~a~p~~~~~r~vI~Ik~GvY~-E~V~i~~~-k~~i~l~G~g~----------------------~~TiIt~ 296 (541)
T PLN02416 241 NFSTITDAINFAPNNSNDRIIIYVREGVYE-ENVEIPIY-KTNIVLIGDGS----------------------DVTFITG 296 (541)
T ss_pred CccCHHHHHHhhhhcCCceEEEEEeCceeE-EEEecCCC-CccEEEEecCC----------------------CceEEeC
Confidence 3567999997653322 2346889999997 44555322 56777777652 0111111
Q ss_pred -c-eEeCCCCccccccCCCCCCCCCceEEEEEecCcEEEEeeEEecCCcc----EEE-EeceecEEEEeEEEECCCCCCC
Q 047322 120 -G-TIDATGAGYWACRKSGKSCPPPTRSISFVGASNIVVSGLTSINSRFF----HIA-IDECVNIMLRKLKINAPSWSPN 192 (343)
Q Consensus 120 -G-~idg~g~~~w~~~~~~~~~~~~~~~i~~~~~~nv~i~~v~i~n~~~~----~i~-~~~~~~v~i~~~~i~~~~~~~~ 192 (343)
. ..+| |. ..+. .-.....+++..+|++|+|.... .+- ...++.+.+.+|+|.+.++
T Consensus 297 ~~~~~~g-----~~--------T~~s-aT~~v~~~~F~a~nitf~Ntag~~~~QAVAl~v~~D~~~fy~c~~~G~QD--- 359 (541)
T PLN02416 297 NRSVVDG-----WT--------TFRS-ATLAVSGEGFLARDITIENTAGPEKHQAVALRVNADLVALYRCTINGYQD--- 359 (541)
T ss_pred CCccCCC-----CC--------ccce-EEEEEECCCeEEEeeEEEECCCCCCCceEEEEEcCccEEEEcceEecccc---
Confidence 0 0011 00 0112 22334579999999999986432 222 2357889999999998654
Q ss_pred CCeeeeeCcccEEEEccEEecCCceEEeCCCceeEEEEeeEEcCC------ceEEEeecccCcCcccccCcEEEEEEEce
Q 047322 193 TDGIHIQSSSGITISNSAIMTGDDCISVGPGTKNLWIERIACGPG------HGIRMKKALAALGPMLLKMVLKNVTVTDS 266 (343)
Q Consensus 193 ~DGi~~~~s~nv~I~n~~i~~~dD~i~i~~~~~ni~i~n~~~~~~------~gi~i~~~~gs~g~~~~~~~~~ni~i~n~ 266 (343)
-+... +.+..+++|+|...=|-|. |.-...++||.+..- .+ .| ...+.. ....-..+.|.||
T Consensus 360 --TLy~~-~~Rqyy~~C~I~GtVDFIF---G~a~avfq~c~i~~~~~~~~~~~-~i----TA~~r~-~~~~~~G~vf~~c 427 (541)
T PLN02416 360 --TLYVH-SFRQFYRECDIYGTIDYIF---GNAAVVFQACNIVSKMPMPGQFT-VI----TAQSRD-TPDEDTGISIQNC 427 (541)
T ss_pred --hhccC-CCceEEEeeEEeeccceee---ccceEEEeccEEEEecCCCCCce-EE----ECCCCC-CCCCCCEEEEEee
Confidence 23332 3567899999998666542 345789999988531 13 22 122221 1233568999999
Q ss_pred EEeCCceEE----EEEeecCCCCceEEeEEEEeEEEecC
Q 047322 267 IFTGTQNGV----RIKTWARPSNGFARNIRFRNIIMTKV 301 (343)
Q Consensus 267 ~~~~~~~gi----~i~~~~~~~~g~i~nI~~~ni~~~~~ 301 (343)
++.....-. ..+++=|-+=..-..+.|.+..+.+.
T Consensus 428 ~i~~~~~~~~~~~~~~~yLGRPW~~~sr~v~~~s~i~~~ 466 (541)
T PLN02416 428 SILATEDLYSNSNSVKSYLGRPWRVYSRTVVLESYIDDF 466 (541)
T ss_pred EEecCCccccccccccccccCCCCCCccEEEEecccCCe
Confidence 998653210 11121110112356788888888764
No 62
>PLN02301 pectinesterase/pectinesterase inhibitor
Probab=97.73 E-value=0.0043 Score=61.61 Aligned_cols=211 Identities=12% Similarity=0.084 Sum_probs=121.9
Q ss_pred hHHHHHHHHHHhhhcC-CCcEEEEcCcEEEEEeEEecCCCcccEEEEEeeEEEecCCcCCcCCCcceEEEEeeeeEEEEc
Q 047322 41 ATQAFLRAWSSACYSN-SPATLHVPRGLFLVKSISFNGPCRHRIVFQIDGTIIAPSSYWSLGNSGFWILFYKVNRLSIHG 119 (343)
Q Consensus 41 dt~Aiq~Ai~~a~~~~-~g~~V~ip~G~Y~~~~l~l~~~~ks~~~l~~~g~l~~~~~~~~~~~~~~~i~~~~~~ni~I~G 119 (343)
|=..||+||+++.... ..-+|+|.+|+|. ..+.+... |.+++|.++|. ..-.|.|
T Consensus 247 ~f~TIq~Ai~a~P~~~~~r~vI~Ik~G~Y~-E~V~i~~~-k~~i~l~G~g~----------------------~~TiIt~ 302 (548)
T PLN02301 247 KYKTVKEAVASAPDNSKTRYVIYVKKGTYK-ENVEIGKK-KKNLMLVGDGM----------------------DSTIITG 302 (548)
T ss_pred CcccHHHHHHhhhhcCCceEEEEEeCceee-EEEEecCC-CceEEEEecCC----------------------CCcEEEe
Confidence 3567999997653322 2347899999997 34555322 46777766652 0011111
Q ss_pred --ceEeCCCCccccccCCCCCCCCCceEEEEEecCcEEEEeeEEecCCc----cEEE-EeceecEEEEeEEEECCCCCCC
Q 047322 120 --GTIDATGAGYWACRKSGKSCPPPTRSISFVGASNIVVSGLTSINSRF----FHIA-IDECVNIMLRKLKINAPSWSPN 192 (343)
Q Consensus 120 --G~idg~g~~~w~~~~~~~~~~~~~~~i~~~~~~nv~i~~v~i~n~~~----~~i~-~~~~~~v~i~~~~i~~~~~~~~ 192 (343)
-..||.+ .....-.....+++..+|++|+|... ..+- -..++...+.+|+|.+.++
T Consensus 303 ~~~~~dg~~--------------T~~SaT~~v~~~~F~a~nitf~Ntag~~~~QAVAlrv~~D~~~fy~C~~~G~QD--- 365 (548)
T PLN02301 303 SLNVIDGST--------------TFRSATVAAVGDGFIAQDIWFQNTAGPEKHQAVALRVSADQAVINRCRIDAYQD--- 365 (548)
T ss_pred CCccCCCCC--------------ceeeEEEEEECCceEEEeeEEEECCCCCCCceEEEEecCCcEEEEeeeeeeccc---
Confidence 0001110 01123344457899999999998643 2232 2357889999999998554
Q ss_pred CCeeeeeCcccEEEEccEEecCCceEEeCCCceeEEEEeeEEcCC------ceEEEeecccCcCcccccCcEEEEEEEce
Q 047322 193 TDGIHIQSSSGITISNSAIMTGDDCISVGPGTKNLWIERIACGPG------HGIRMKKALAALGPMLLKMVLKNVTVTDS 266 (343)
Q Consensus 193 ~DGi~~~~s~nv~I~n~~i~~~dD~i~i~~~~~ni~i~n~~~~~~------~gi~i~~~~gs~g~~~~~~~~~ni~i~n~ 266 (343)
-+.... .+-..+||+|...=|-| -|.-...++||.+..- .+. | ...|.. +...-..+.|.||
T Consensus 366 --TLy~~~-~Rqyy~~C~I~GtVDFI---FG~a~avfq~c~i~~~~~~~~~~~~-i----TAqgr~-~~~~~tG~vf~~c 433 (548)
T PLN02301 366 --TLYAHS-LRQFYRDSYITGTVDFI---FGNAAVVFQNCKIVARKPMAGQKNM-V----TAQGRT-DPNQNTGISIQKC 433 (548)
T ss_pred --cceecC-CcEEEEeeEEEecccee---cccceeEEeccEEEEecCCCCCCce-E----EecCCC-CCCCCCEEEEEee
Confidence 343333 46789999999876654 2456889999988531 121 2 112221 1234568999999
Q ss_pred EEeCCceEEE----EEeecCCCCceEEeEEEEeEEEecCCee
Q 047322 267 IFTGTQNGVR----IKTWARPSNGFARNIRFRNIIMTKVFNP 304 (343)
Q Consensus 267 ~~~~~~~gi~----i~~~~~~~~g~i~nI~~~ni~~~~~~~~ 304 (343)
++.....-.. .+++=|-+=..-+.+.|.+..+.+.=.|
T Consensus 434 ~i~~~~~~~~~~~~~~~yLGRPW~~ysr~V~~~s~l~~~I~p 475 (548)
T PLN02301 434 DIIASSDLEPVKGSFKTYLGRPWKEYSRTVVMQSYIDDHIDP 475 (548)
T ss_pred EEecCccccccccccceeeecCCCCCceEEEEecccCCeecc
Confidence 9987532111 1111110112357788888888765333
No 63
>PLN03043 Probable pectinesterase/pectinesterase inhibitor; Provisional
Probab=97.70 E-value=0.0052 Score=61.09 Aligned_cols=210 Identities=11% Similarity=0.084 Sum_probs=122.7
Q ss_pred hHHHHHHHHHHhhhcC----CCcEEEEcCcEEEEEeEEecCCCcccEEEEEeeEEEecCCcCCcCCCcceEEEEeeeeEE
Q 047322 41 ATQAFLRAWSSACYSN----SPATLHVPRGLFLVKSISFNGPCRHRIVFQIDGTIIAPSSYWSLGNSGFWILFYKVNRLS 116 (343)
Q Consensus 41 dt~Aiq~Ai~~a~~~~----~g~~V~ip~G~Y~~~~l~l~~~~ks~~~l~~~g~l~~~~~~~~~~~~~~~i~~~~~~ni~ 116 (343)
|=.-||+||+++.... +--+|||.+|+|. ..+.+... |.+++|..+|. ....
T Consensus 234 ~f~TI~~Av~a~p~~~~~~~~r~vI~vk~G~Y~-E~V~i~~~-k~~i~l~G~g~----------------------~~ti 289 (538)
T PLN03043 234 NFTTITDAIAAAPNNSKPEDGYFVIYAREGYYE-EYVVVPKN-KKNIMLIGDGI----------------------NKTI 289 (538)
T ss_pred CCcCHHHHHHhccccCCCCcceEEEEEcCeeeE-EEEEeCCC-CCcEEEEecCC----------------------CCeE
Confidence 3567999997543221 1248999999997 44555322 56777777651 1111
Q ss_pred EEc--ceEeCCCCccccccCCCCCCCCCceEEEEEecCcEEEEeeEEecCCc----cEEE-EeceecEEEEeEEEECCCC
Q 047322 117 IHG--GTIDATGAGYWACRKSGKSCPPPTRSISFVGASNIVVSGLTSINSRF----FHIA-IDECVNIMLRKLKINAPSW 189 (343)
Q Consensus 117 I~G--G~idg~g~~~w~~~~~~~~~~~~~~~i~~~~~~nv~i~~v~i~n~~~----~~i~-~~~~~~v~i~~~~i~~~~~ 189 (343)
|.+ -..|| |. .-..+-.....+++..++++|+|... ..+- -..++...+.+|+|.+.++
T Consensus 290 It~~~~~~dg-----~~---------T~~saT~~v~~~~F~a~~it~~Ntag~~~~QAvAlrv~~D~~~f~~C~~~gyQD 355 (538)
T PLN03043 290 ITGNHSVVDG-----WT---------TFNSSTFAVSGERFVAVDVTFRNTAGPEKHQAVALRNNADLSTFYRCSFEGYQD 355 (538)
T ss_pred EEeCCccCCC-----Cc---------cccceEEEEECCCEEEEeeEEEECCCCCCCceEEEEEcCCcEEEEeeEEeccCc
Confidence 222 01111 10 01123344467999999999999643 2332 3456789999999998654
Q ss_pred CCCCCeeeeeCcccEEEEccEEecCCceEEeCCCceeEEEEeeEEcC-----C-ce-EEEeecccCcCcccccCcEEEEE
Q 047322 190 SPNTDGIHIQSSSGITISNSAIMTGDDCISVGPGTKNLWIERIACGP-----G-HG-IRMKKALAALGPMLLKMVLKNVT 262 (343)
Q Consensus 190 ~~~~DGi~~~~s~nv~I~n~~i~~~dD~i~i~~~~~ni~i~n~~~~~-----~-~g-i~i~~~~gs~g~~~~~~~~~ni~ 262 (343)
-+... +.+-..++|+|...=|-|. |.-...++||.+.. + .+ |.- .|.. +...-..+.
T Consensus 356 -----TLy~~-~~rq~y~~c~I~GtVDFIF---G~a~avfq~c~i~~r~~~~~~~~~iTA------~~r~-~~~~~tG~~ 419 (538)
T PLN03043 356 -----TLYVH-SLRQFYRECDIYGTVDFIF---GNAAAIFQNCNLYARKPMANQKNAFTA------QGRT-DPNQNTGIS 419 (538)
T ss_pred -----ccccC-CCcEEEEeeEEeeccceEe---ecceeeeeccEEEEecCCCCCCceEEe------cCCC-CCCCCceEE
Confidence 34333 3467899999998766552 34588999999853 1 13 222 2222 123346899
Q ss_pred EEceEEeCCceEE----EEEeecCCCCceEEeEEEEeEEEecCCee
Q 047322 263 VTDSIFTGTQNGV----RIKTWARPSNGFARNIRFRNIIMTKVFNP 304 (343)
Q Consensus 263 i~n~~~~~~~~gi----~i~~~~~~~~g~i~nI~~~ni~~~~~~~~ 304 (343)
|.||++.....-. ..+++=|-+=..-+.+.|.+..+.+.=.|
T Consensus 420 ~~~c~i~~~~~~~~~~~~~~~yLGRpW~~ysr~v~~~s~i~~~I~p 465 (538)
T PLN03043 420 IINCTIEAAPDLAMDPNSTMNFLGRPWKPYSRTVYMQSYIGDLIQP 465 (538)
T ss_pred EEecEEecCCcccccccccceeccCCCCCCceEEEEecccCCeecc
Confidence 9999998753210 01111110112357888999888765333
No 64
>PLN02313 Pectinesterase/pectinesterase inhibitor
Probab=97.69 E-value=0.0048 Score=61.93 Aligned_cols=212 Identities=14% Similarity=0.102 Sum_probs=121.8
Q ss_pred hHHHHHHHHHHhhhc-CCCcEEEEcCcEEEEEeEEecCCCcccEEEEEeeEEEecCCcCCcCCCcceEEEEeeeeEEEEc
Q 047322 41 ATQAFLRAWSSACYS-NSPATLHVPRGLFLVKSISFNGPCRHRIVFQIDGTIIAPSSYWSLGNSGFWILFYKVNRLSIHG 119 (343)
Q Consensus 41 dt~Aiq~Ai~~a~~~-~~g~~V~ip~G~Y~~~~l~l~~~~ks~~~l~~~g~l~~~~~~~~~~~~~~~i~~~~~~ni~I~G 119 (343)
|=..||+||+++... ...-+|+|.+|+|. ..+.+... |.+++|..+|. ....|++
T Consensus 286 ~f~TI~~Av~a~p~~~~~r~vI~ik~GvY~-E~V~i~~~-k~ni~l~Gdg~----------------------~~TiIt~ 341 (587)
T PLN02313 286 DFTTVAAAVAAAPEKSNKRFVIHIKAGVYR-ENVEVTKK-KKNIMFLGDGR----------------------GKTIITG 341 (587)
T ss_pred CCccHHHHHHhccccCCceEEEEEeCceeE-EEEEeCCC-CCeEEEEecCC----------------------CccEEEe
Confidence 356899999765322 22348899999997 34444322 46777766652 1111222
Q ss_pred --ceEeCCCCccccccCCCCCCCCCceEEEEEecCcEEEEeeEEecCCc----cEEE-EeceecEEEEeEEEECCCCCCC
Q 047322 120 --GTIDATGAGYWACRKSGKSCPPPTRSISFVGASNIVVSGLTSINSRF----FHIA-IDECVNIMLRKLKINAPSWSPN 192 (343)
Q Consensus 120 --G~idg~g~~~w~~~~~~~~~~~~~~~i~~~~~~nv~i~~v~i~n~~~----~~i~-~~~~~~v~i~~~~i~~~~~~~~ 192 (343)
-..||.. ..+. .-.....+++..++++|+|... ..+- -..++...+.+|.|.+.++
T Consensus 342 ~~~~~~g~~-------------t~~s-at~~v~~~~F~a~~itf~Ntag~~~~QAvAlrv~~D~~~fy~C~~~g~QD--- 404 (587)
T PLN02313 342 SRNVVDGST-------------TFHS-ATVAAVGERFLARDITFQNTAGPSKHQAVALRVGSDFSAFYQCDMFAYQD--- 404 (587)
T ss_pred CCcccCCCC-------------ceee-EEEEEECCCeEEEeeEEEeCCCCCCCceEEEEecCCcEEEEeeeEecccc---
Confidence 0111110 0012 2333457899999999998743 2222 2457889999999998554
Q ss_pred CCeeeeeCcccEEEEccEEecCCceEEeCCCceeEEEEeeEEcCC---ce--EEEeecccCcCcccccCcEEEEEEEceE
Q 047322 193 TDGIHIQSSSGITISNSAIMTGDDCISVGPGTKNLWIERIACGPG---HG--IRMKKALAALGPMLLKMVLKNVTVTDSI 267 (343)
Q Consensus 193 ~DGi~~~~s~nv~I~n~~i~~~dD~i~i~~~~~ni~i~n~~~~~~---~g--i~i~~~~gs~g~~~~~~~~~ni~i~n~~ 267 (343)
-+... +.+--.++|+|...=|-|. |.-...++||.+..- .| -.| ...|.. +...-..+.|.||+
T Consensus 405 --TLy~~-~~rq~y~~c~I~GtvDFIF---G~a~avfq~c~i~~r~~~~~~~~~i----TAqgr~-~~~~~tG~v~~~c~ 473 (587)
T PLN02313 405 --TLYVH-SNRQFFVKCHITGTVDFIF---GNAAAVLQDCDINARRPNSGQKNMV----TAQGRS-DPNQNTGIVIQNCR 473 (587)
T ss_pred --hhccC-CCcEEEEeeEEeeccceec---cceeEEEEccEEEEecCCCCCcceE----EecCCC-CCCCCceEEEEecE
Confidence 33333 3467889999998766553 456889999998631 11 122 223322 12345689999999
Q ss_pred EeCCceEEE----EEeecCCCCceEEeEEEEeEEEecCCee
Q 047322 268 FTGTQNGVR----IKTWARPSNGFARNIRFRNIIMTKVFNP 304 (343)
Q Consensus 268 ~~~~~~gi~----i~~~~~~~~g~i~nI~~~ni~~~~~~~~ 304 (343)
+.....-.. .+++=|-+=..-+.+.|.+..+.+.=.|
T Consensus 474 i~~~~~~~~~~~~~~~yLGRPW~~ysr~v~~~s~i~~~I~p 514 (587)
T PLN02313 474 IGGTSDLLAVKGTFPTYLGRPWKEYSRTVIMQSDISDVIRP 514 (587)
T ss_pred EecCCccccccccchhhccCCCCCCccEEEEecccCCeEcC
Confidence 987532111 1111110112346778888888765444
No 65
>PLN02484 probable pectinesterase/pectinesterase inhibitor
Probab=97.68 E-value=0.0065 Score=60.97 Aligned_cols=212 Identities=11% Similarity=0.053 Sum_probs=123.2
Q ss_pred HHHHHHHHHHhhhc-CCCcEEEEcCcEEEEEeEEecCCCcccEEEEEeeEEEecCCcCCcCCCcceEEEEeeeeEEEEcc
Q 047322 42 TQAFLRAWSSACYS-NSPATLHVPRGLFLVKSISFNGPCRHRIVFQIDGTIIAPSSYWSLGNSGFWILFYKVNRLSIHGG 120 (343)
Q Consensus 42 t~Aiq~Ai~~a~~~-~~g~~V~ip~G~Y~~~~l~l~~~~ks~~~l~~~g~l~~~~~~~~~~~~~~~i~~~~~~ni~I~GG 120 (343)
-.-||+||+++... ...-+|+|.+|+|.=..+.+... |.+++|..+|. ....|+++
T Consensus 284 f~TIq~Ai~a~P~~~~~r~vI~Ik~G~Y~E~~v~i~~~-k~ni~l~G~g~----------------------~~TiIt~~ 340 (587)
T PLN02484 284 FKTISEAIKKAPEHSSRRTIIYVKAGRYEENNLKVGRK-KTNLMFIGDGK----------------------GKTVITGG 340 (587)
T ss_pred cccHHHHHHhccccCCCcEEEEEeCCEEEEEEEEECCC-CceEEEEecCC----------------------CCeEEecC
Confidence 56799999765332 22457899999998544555332 56777777642 11112220
Q ss_pred e--EeCCCCccccccCCCCCCCCCceEEEEEecCcEEEEeeEEecCCc----cEEE-EeceecEEEEeEEEECCCCCCCC
Q 047322 121 T--IDATGAGYWACRKSGKSCPPPTRSISFVGASNIVVSGLTSINSRF----FHIA-IDECVNIMLRKLKINAPSWSPNT 193 (343)
Q Consensus 121 ~--idg~g~~~w~~~~~~~~~~~~~~~i~~~~~~nv~i~~v~i~n~~~----~~i~-~~~~~~v~i~~~~i~~~~~~~~~ 193 (343)
. .++.+ .-...-.....+++..++++|.|... ..+- -...+...+.+|+|...++
T Consensus 341 ~~~~~~~~--------------t~~saT~~v~~~~F~a~~itf~Ntag~~~~QAvAlrv~~D~~~fy~C~~~G~QD---- 402 (587)
T PLN02484 341 KSIFDNLT--------------TFHTASFAATGAGFIARDMTFENWAGPAKHQAVALRVGADHAVVYRCNIIGYQD---- 402 (587)
T ss_pred CcccCCCc--------------ccceEEEEEEcCCEEEEeeEEEECCCCCCCceEEEEecCCcEEEEeeeEeccCc----
Confidence 0 01100 01122344467899999999998643 2332 2357889999999998554
Q ss_pred CeeeeeCcccEEEEccEEecCCceEEeCCCceeEEEEeeEEcCC------ceEEEeecccCcCcccccCcEEEEEEEceE
Q 047322 194 DGIHIQSSSGITISNSAIMTGDDCISVGPGTKNLWIERIACGPG------HGIRMKKALAALGPMLLKMVLKNVTVTDSI 267 (343)
Q Consensus 194 DGi~~~~s~nv~I~n~~i~~~dD~i~i~~~~~ni~i~n~~~~~~------~gi~i~~~~gs~g~~~~~~~~~ni~i~n~~ 267 (343)
-+... ..+-.+++|+|...=|-| -|.-...++||.+..- .|.-. ..+.. +...-..+.|.||+
T Consensus 403 -TLy~~-~~Rqyy~~C~I~GtVDFI---FG~a~avfq~C~i~~~~~~~~~~~~IT-----Aq~r~-~~~~~~G~vf~~c~ 471 (587)
T PLN02484 403 -TLYVH-SNRQFFRECDIYGTVDFI---FGNAAVVLQNCSIYARKPMAQQKNTIT-----AQNRK-DPNQNTGISIHACR 471 (587)
T ss_pred -ccccC-CCcEEEEecEEEecccee---cccceeEEeccEEEEecCCCCCceEEE-----ecCCC-CCCCCcEEEEEeeE
Confidence 33332 346789999999865644 2456889999998631 23222 12221 12345789999999
Q ss_pred EeCCceEE----EEEeecCCCCceEEeEEEEeEEEecCCeeE
Q 047322 268 FTGTQNGV----RIKTWARPSNGFARNIRFRNIIMTKVFNPI 305 (343)
Q Consensus 268 ~~~~~~gi----~i~~~~~~~~g~i~nI~~~ni~~~~~~~~i 305 (343)
+.....-. ..+++=|-+=..-+.+.|.+..|.+.=.|.
T Consensus 472 i~~~~~~~~~~~~~~~yLGRPW~~ysrvV~~~s~i~~~I~p~ 513 (587)
T PLN02484 472 ILAASDLAASKGSFPTYLGRPWKLYSRTVYMMSYMGDHIHPR 513 (587)
T ss_pred EecCCccccccCccceeccCCCCCCceEEEEecccCCeEccc
Confidence 98753210 111111101123578889999887654443
No 66
>PLN02745 Putative pectinesterase/pectinesterase inhibitor
Probab=97.66 E-value=0.0073 Score=60.68 Aligned_cols=209 Identities=9% Similarity=0.046 Sum_probs=121.8
Q ss_pred hHHHHHHHHHHhhhc-CCCcEEEEcCcEEEEEeEEecCCCcccEEEEEeeEEEecCCcCCcCCCcceEEEEeeeeEEEEc
Q 047322 41 ATQAFLRAWSSACYS-NSPATLHVPRGLFLVKSISFNGPCRHRIVFQIDGTIIAPSSYWSLGNSGFWILFYKVNRLSIHG 119 (343)
Q Consensus 41 dt~Aiq~Ai~~a~~~-~~g~~V~ip~G~Y~~~~l~l~~~~ks~~~l~~~g~l~~~~~~~~~~~~~~~i~~~~~~ni~I~G 119 (343)
|=..||+||+++... ...-+|+|.+|+|. ..+.+... |.+++|..+|. ....|.+
T Consensus 296 ~f~TIq~Ai~a~P~~~~~r~vI~Ik~GvY~-E~V~I~~~-k~~i~l~G~g~----------------------~~TiIt~ 351 (596)
T PLN02745 296 NFTTISDALAAMPAKYEGRYVIYVKQGIYD-ETVTVDKK-MVNVTMYGDGS----------------------QKTIVTG 351 (596)
T ss_pred CcccHHHHHHhccccCCceEEEEEeCCeeE-EEEEEcCC-CceEEEEecCC----------------------CceEEEE
Confidence 356899999765332 12357889999997 34555322 56777777652 0011111
Q ss_pred -ce-EeCCCCccccccCCCCCCCCCceEEEEEecCcEEEEeeEEecCCc----cEEE-EeceecEEEEeEEEECCCCCCC
Q 047322 120 -GT-IDATGAGYWACRKSGKSCPPPTRSISFVGASNIVVSGLTSINSRF----FHIA-IDECVNIMLRKLKINAPSWSPN 192 (343)
Q Consensus 120 -G~-idg~g~~~w~~~~~~~~~~~~~~~i~~~~~~nv~i~~v~i~n~~~----~~i~-~~~~~~v~i~~~~i~~~~~~~~ 192 (343)
.. -+|- ..-...-.....+++..++++|+|... ..+- ...++...+.+|+|.+.++
T Consensus 352 ~~~~~~g~--------------~T~~saT~~v~~~~F~a~nitf~Ntag~~~~QAVAl~v~~Dr~~f~~c~~~G~QD--- 414 (596)
T PLN02745 352 NKNFADGV--------------RTFRTATFVALGEGFMAKSMGFRNTAGPEKHQAVAIRVQSDRSIFLNCRFEGYQD--- 414 (596)
T ss_pred CCcccCCC--------------cceeeEEEEEEcCCEEEEeeEEEECCCCCCCceEEEEEcCCcEEEEeeEEeeccc---
Confidence 00 0000 001122333468999999999998633 2222 3457899999999998554
Q ss_pred CCeeeeeCcccEEEEccEEecCCceEEeCCCceeEEEEeeEEcCC------ceEEEeecccCcCcccccCcEEEEEEEce
Q 047322 193 TDGIHIQSSSGITISNSAIMTGDDCISVGPGTKNLWIERIACGPG------HGIRMKKALAALGPMLLKMVLKNVTVTDS 266 (343)
Q Consensus 193 ~DGi~~~~s~nv~I~n~~i~~~dD~i~i~~~~~ni~i~n~~~~~~------~gi~i~~~~gs~g~~~~~~~~~ni~i~n~ 266 (343)
-+... ..+-.+++|+|...=|-| + |.-...++||.+..- .|. | ...|.. +...-..+.|.||
T Consensus 415 --TLy~~-~~Rqyy~~C~I~GtVDFI-F--G~a~avf~~C~i~~~~~~~~~~~~-i----TAq~r~-~~~~~~Gfvf~~c 482 (596)
T PLN02745 415 --TLYAQ-THRQFYRSCVITGTIDFI-F--GDAAAIFQNCLIFVRKPLPNQQNT-V----TAQGRV-DKFETTGIVLQNC 482 (596)
T ss_pred --ccccC-CCcEEEEeeEEEeeccEE-e--cceeEEEEecEEEEecCCCCCCce-E----EecCCC-CCCCCceEEEEee
Confidence 33333 356889999999876644 2 346889999998531 232 2 112211 1233578999999
Q ss_pred EEeCCceEEE----EEeecCCCCceEEeEEEEeEEEecCC
Q 047322 267 IFTGTQNGVR----IKTWARPSNGFARNIRFRNIIMTKVF 302 (343)
Q Consensus 267 ~~~~~~~gi~----i~~~~~~~~g~i~nI~~~ni~~~~~~ 302 (343)
++........ .+++=|-+=..-+.+.|.+..+.+.=
T Consensus 483 ~i~~~~~~~~~~~~~~~yLGRPW~~ysrvv~~~s~l~~~I 522 (596)
T PLN02745 483 RIAPDEDLKPVKTEVKSYLGRPWKEFSRTIVMESTIEDVI 522 (596)
T ss_pred EEecCccccccccccceeccCCCCCCccEEEEecccCCeE
Confidence 9987532111 11211101123578888888887653
No 67
>PLN02468 putative pectinesterase/pectinesterase inhibitor
Probab=97.66 E-value=0.0082 Score=60.05 Aligned_cols=203 Identities=11% Similarity=0.099 Sum_probs=117.5
Q ss_pred HHHHHHHHHHhhhc-CCCcEEEEcCcEEEEEeEEecCCCcccEEEEEeeEEEecCCcCCcCCCcceEEEEeeeeEEEEc-
Q 047322 42 TQAFLRAWSSACYS-NSPATLHVPRGLFLVKSISFNGPCRHRIVFQIDGTIIAPSSYWSLGNSGFWILFYKVNRLSIHG- 119 (343)
Q Consensus 42 t~Aiq~Ai~~a~~~-~~g~~V~ip~G~Y~~~~l~l~~~~ks~~~l~~~g~l~~~~~~~~~~~~~~~i~~~~~~ni~I~G- 119 (343)
=.-||+||+++.+. ...-+|+|.+|+|. ..+.+... |.+++|..+|. ..-.|.|
T Consensus 270 f~tI~~Av~a~p~~~~~~~vI~ik~GvY~-E~V~i~~~-k~~i~~~G~g~----------------------~~tiIt~~ 325 (565)
T PLN02468 270 YKTISEALKDVPEKSEKRTIIYVKKGVYF-ENVRVEKK-KWNVVMVGDGM----------------------SKTIVSGS 325 (565)
T ss_pred ccCHHHHHHhchhcCCCcEEEEEeCCceE-EEEEecCC-CCeEEEEecCC----------------------CCCEEEeC
Confidence 46799999765332 23458999999997 44555322 45777766652 0011122
Q ss_pred -ceEeCCCCccccccCCCCCCCCCceEEEEEecCcEEEEeeEEecCCc----cEEE-EeceecEEEEeEEEECCCCCCCC
Q 047322 120 -GTIDATGAGYWACRKSGKSCPPPTRSISFVGASNIVVSGLTSINSRF----FHIA-IDECVNIMLRKLKINAPSWSPNT 193 (343)
Q Consensus 120 -G~idg~g~~~w~~~~~~~~~~~~~~~i~~~~~~nv~i~~v~i~n~~~----~~i~-~~~~~~v~i~~~~i~~~~~~~~~ 193 (343)
-..||.. .-...-.....+++..++++|+|... ..+- -..++...+.+|+|.+.++
T Consensus 326 ~~~~dg~~--------------t~~saT~~v~~~~f~a~~itf~Ntag~~~~QAVAl~v~~D~~~fy~c~~~G~QD---- 387 (565)
T PLN02468 326 LNFVDGTP--------------TFSTATFAVFGKGFMARDMGFRNTAGPIKHQAVALMSSADLSVFYRCTMDAFQD---- 387 (565)
T ss_pred CccCCCCC--------------ccceeeeeEECCCeEEEEEEEEeCCCCCCCceEEEEEcCCcEEEEEeEEEeccc----
Confidence 0011110 00112233457899999999998643 2222 3457889999999998554
Q ss_pred CeeeeeCcccEEEEccEEecCCceEEeCCCceeEEEEeeEEcC-----C-ceEEEeecccCcCcccccCcEEEEEEEceE
Q 047322 194 DGIHIQSSSGITISNSAIMTGDDCISVGPGTKNLWIERIACGP-----G-HGIRMKKALAALGPMLLKMVLKNVTVTDSI 267 (343)
Q Consensus 194 DGi~~~~s~nv~I~n~~i~~~dD~i~i~~~~~ni~i~n~~~~~-----~-~gi~i~~~~gs~g~~~~~~~~~ni~i~n~~ 267 (343)
-+.... .+-..++|+|...=|-|. |.-.+.++||.+.. + .+. | ...|.. +...-..+.|.||+
T Consensus 388 -TLy~~~-~rq~y~~C~I~GtvDFIF---G~a~avfq~c~i~~~~~~~~~~~~-i----TA~~r~-~~~~~~G~vf~~c~ 456 (565)
T PLN02468 388 -TLYAHA-QRQFYRECNIYGTVDFIF---GNSAVVFQNCNILPRRPMKGQQNT-I----TAQGRT-DPNQNTGISIQNCT 456 (565)
T ss_pred -hhccCC-CceEEEeeEEecccceee---ccceEEEeccEEEEecCCCCCCce-E----EecCCC-CCCCCceEEEEccE
Confidence 233332 466789999987666442 44688999998852 1 122 2 122222 12345679999999
Q ss_pred EeCCce----EEEEEeecCCCCceEEeEEEEeEEEecC
Q 047322 268 FTGTQN----GVRIKTWARPSNGFARNIRFRNIIMTKV 301 (343)
Q Consensus 268 ~~~~~~----gi~i~~~~~~~~g~i~nI~~~ni~~~~~ 301 (343)
+..... ..+++- +=..-+.+.|.+..+.+.
T Consensus 457 i~~~~~~~~~~~yLGR----PW~~~sr~v~~~s~~~~~ 490 (565)
T PLN02468 457 ILPLGDLTSVKTFLGR----PWKNYSTTVIMHSMMGSL 490 (565)
T ss_pred EecCCCccccceeeec----CCCCCceEEEEecccCCe
Confidence 987532 122321 112345677888887664
No 68
>PLN02990 Probable pectinesterase/pectinesterase inhibitor
Probab=97.66 E-value=0.01 Score=59.39 Aligned_cols=212 Identities=11% Similarity=0.054 Sum_probs=122.0
Q ss_pred hHHHHHHHHHHhhhc-CCCcEEEEcCcEEEEEeEEecCCCcccEEEEEeeEEEecCCcCCcCCCcceEEEEeeeeEEEEc
Q 047322 41 ATQAFLRAWSSACYS-NSPATLHVPRGLFLVKSISFNGPCRHRIVFQIDGTIIAPSSYWSLGNSGFWILFYKVNRLSIHG 119 (343)
Q Consensus 41 dt~Aiq~Ai~~a~~~-~~g~~V~ip~G~Y~~~~l~l~~~~ks~~~l~~~g~l~~~~~~~~~~~~~~~i~~~~~~ni~I~G 119 (343)
|-.-||+||+++... ...-+|+|.+|+|. ..+.+... |.+++|..+|.- ...|... .+.. +
T Consensus 270 ~f~TIq~Av~a~p~~~~~r~vI~Ik~GvY~-E~V~i~~~-k~~i~l~G~g~~------------~TiIt~~--~~~~--~ 331 (572)
T PLN02990 270 QYKTINEALNAVPKANQKPFVIYIKQGVYN-EKVDVTKK-MTHVTFIGDGPT------------KTKITGS--LNFY--I 331 (572)
T ss_pred CCcCHHHHHhhCcccCCceEEEEEeCceeE-EEEEecCC-CCcEEEEecCCC------------ceEEEec--cccC--C
Confidence 355799999865322 12357999999997 34555322 567888777520 0111100 0100 0
Q ss_pred ceEeCCCCccccccCCCCCCCCCceEEEEEecCcEEEEeeEEecCCc----cEEE-EeceecEEEEeEEEECCCCCCCCC
Q 047322 120 GTIDATGAGYWACRKSGKSCPPPTRSISFVGASNIVVSGLTSINSRF----FHIA-IDECVNIMLRKLKINAPSWSPNTD 194 (343)
Q Consensus 120 G~idg~g~~~w~~~~~~~~~~~~~~~i~~~~~~nv~i~~v~i~n~~~----~~i~-~~~~~~v~i~~~~i~~~~~~~~~D 194 (343)
|. | ...+. .-.....+++..++++|+|... ..+- -..++...+.+|+|.+.++
T Consensus 332 g~--------~--------~T~~s-aT~~v~~~~F~a~nitf~Ntag~~~~QAVAlrv~~D~~~f~~c~~~G~QD----- 389 (572)
T PLN02990 332 GK--------V--------KTYLT-ATVAINGDHFTAKNIGFENTAGPEGHQAVALRVSADYAVFYNCQIDGYQD----- 389 (572)
T ss_pred CC--------c--------cceee-eEEEEEcCCEEEEeeEEEeCCCCCCCceEEEEEcCCcEEEEeeeEecccc-----
Confidence 00 0 00111 2333457899999999998743 2232 2457889999999998554
Q ss_pred eeeeeCcccEEEEccEEecCCceEEeCCCceeEEEEeeEEcC-----CceEEEeecccCcCcccccCcEEEEEEEceEEe
Q 047322 195 GIHIQSSSGITISNSAIMTGDDCISVGPGTKNLWIERIACGP-----GHGIRMKKALAALGPMLLKMVLKNVTVTDSIFT 269 (343)
Q Consensus 195 Gi~~~~s~nv~I~n~~i~~~dD~i~i~~~~~ni~i~n~~~~~-----~~gi~i~~~~gs~g~~~~~~~~~ni~i~n~~~~ 269 (343)
-+... ..+-.+++|+|...=|-|. |.-...++||.+.. +..-.| ...|.. +...-..+.|.||++.
T Consensus 390 TLy~~-~~Rqyy~~C~I~GtVDFIF---G~a~avf~~C~i~~~~~~~~~~~~i----TAq~r~-~~~~~~G~vf~~C~it 460 (572)
T PLN02990 390 TLYVH-SHRQFFRDCTVSGTVDFIF---GDAKVVLQNCNIVVRKPMKGQSCMI----TAQGRS-DVRESTGLVLQNCHIT 460 (572)
T ss_pred hhccC-CCcEEEEeeEEecccceEc---cCceEEEEccEEEEecCCCCCceEE----EeCCCC-CCCCCceEEEEeeEEe
Confidence 33333 3467889999998766553 34578999999852 111222 122221 1223468999999998
Q ss_pred CCceE--------EEEEeecCCCCceEEeEEEEeEEEecCCeeE
Q 047322 270 GTQNG--------VRIKTWARPSNGFARNIRFRNIIMTKVFNPI 305 (343)
Q Consensus 270 ~~~~g--------i~i~~~~~~~~g~i~nI~~~ni~~~~~~~~i 305 (343)
..... .+++- +=..-+.+.|.+..|.+.=.|.
T Consensus 461 ~~~~~~~~~~~~~~yLGR----pW~~ysrvV~~~s~i~~~I~p~ 500 (572)
T PLN02990 461 GEPAYIPVKSINKAYLGR----PWKEFSRTIIMGTTIDDVIDPA 500 (572)
T ss_pred cCccccccccccceEeec----CCCCCceEEEEecccCCeeccc
Confidence 75321 22321 1123467888888887654443
No 69
>PLN02197 pectinesterase
Probab=97.60 E-value=0.0078 Score=60.28 Aligned_cols=214 Identities=9% Similarity=0.035 Sum_probs=118.6
Q ss_pred hHHHHHHHHHHhhhcC-CCcEEEEcCcEEEEEeEEecCCCcccEEEEEeeEEEecCCcCCcCCCcceEEEEeeeeEEEEc
Q 047322 41 ATQAFLRAWSSACYSN-SPATLHVPRGLFLVKSISFNGPCRHRIVFQIDGTIIAPSSYWSLGNSGFWILFYKVNRLSIHG 119 (343)
Q Consensus 41 dt~Aiq~Ai~~a~~~~-~g~~V~ip~G~Y~~~~l~l~~~~ks~~~l~~~g~l~~~~~~~~~~~~~~~i~~~~~~ni~I~G 119 (343)
|=..||+||+++.... ..-+|+|.+|+|. ..+.+... |.+++|..+|.- ...|... .+..
T Consensus 286 ~f~TIq~Ai~a~P~~~~~r~vI~Ik~GvY~-E~V~I~~~-k~ni~l~G~g~~------------~TiIt~~--~~~~--- 346 (588)
T PLN02197 286 QFKTISQAVMACPDKNPGRCIIHIKAGIYN-EQVTIPKK-KNNIFMFGDGAR------------KTVISYN--RSVK--- 346 (588)
T ss_pred CcCCHHHHHHhccccCCceEEEEEeCceEE-EEEEccCC-CceEEEEEcCCC------------CeEEEec--cccc---
Confidence 3567999997653322 2346889999997 44555322 567777776520 0111110 0000
Q ss_pred ceEeCCCCccccccCCCCCCCCCceEEEEEecCcEEEEeeEEecCCc----cEEE-EeceecEEEEeEEEECCCCCCCCC
Q 047322 120 GTIDATGAGYWACRKSGKSCPPPTRSISFVGASNIVVSGLTSINSRF----FHIA-IDECVNIMLRKLKINAPSWSPNTD 194 (343)
Q Consensus 120 G~idg~g~~~w~~~~~~~~~~~~~~~i~~~~~~nv~i~~v~i~n~~~----~~i~-~~~~~~v~i~~~~i~~~~~~~~~D 194 (343)
..+|.+ ..+. .-.....+++..++++|+|... ..+- ...++...+.+|+|.+.++
T Consensus 347 -~~~g~~-------------T~~S-aT~~v~~~~F~a~nitf~Ntag~~~~QAVAlrv~~D~~~fy~C~f~GyQD----- 406 (588)
T PLN02197 347 -LSPGTT-------------TSLS-GTVQVESEGFMAKWIGFKNTAGPMGHQAVAIRVNGDRAVIFNCRFDGYQD----- 406 (588)
T ss_pred -cCCCCc-------------ccce-eEEEEECCcEEEEEeEEEeCCCCCCCceEEEEecCCcEEEEEeEEEecCc-----
Confidence 001100 0112 2233458899999999998643 2332 3457889999999998553
Q ss_pred eeeeeCcccEEEEccEEecCCceEEeCCCceeEEEEeeEEcCC---ce--EEEeecccCcCcccccCcEEEEEEEceEEe
Q 047322 195 GIHIQSSSGITISNSAIMTGDDCISVGPGTKNLWIERIACGPG---HG--IRMKKALAALGPMLLKMVLKNVTVTDSIFT 269 (343)
Q Consensus 195 Gi~~~~s~nv~I~n~~i~~~dD~i~i~~~~~ni~i~n~~~~~~---~g--i~i~~~~gs~g~~~~~~~~~ni~i~n~~~~ 269 (343)
-+.... .+-.+++|+|...=|-| -|.....++||.+..- .| -.| ...|.......-..+.|.||++.
T Consensus 407 TLy~~~-~Rqyy~~C~I~GtVDFI---FG~a~avfq~C~i~~r~~~~~~~~~i----TAqgr~~~~~~~tG~vf~~C~it 478 (588)
T PLN02197 407 TLYVNN-GRQFYRNIVVSGTVDFI---FGKSATVIQNSLIVVRKGSKGQYNTV----TADGNEKGLAMKIGIVLQNCRIV 478 (588)
T ss_pred ceEecC-CCEEEEeeEEEeccccc---ccceeeeeecCEEEEecCCCCCceeE----ECCCCCCCCCCCcEEEEEccEEe
Confidence 344433 56789999999765544 2345689999987521 11 122 22222110123467999999998
Q ss_pred CCce--E--EEEEeecCCCCceEEeEEEEeEEEecC
Q 047322 270 GTQN--G--VRIKTWARPSNGFARNIRFRNIIMTKV 301 (343)
Q Consensus 270 ~~~~--g--i~i~~~~~~~~g~i~nI~~~ni~~~~~ 301 (343)
.... + ...+++=|-+=..-..+.|.+..|.+.
T Consensus 479 ~~~~~~~~~~~~~~yLGRPW~~ysrvV~~~s~~~~~ 514 (588)
T PLN02197 479 PDKKLTAERLTVASYLGRPWKKFSTTVIISTEIGDL 514 (588)
T ss_pred cCCcccccccccccccCCCCCCCceEEEEecccCCe
Confidence 7431 0 011111110112356788888888664
No 70
>PLN02314 pectinesterase
Probab=97.57 E-value=0.0098 Score=59.80 Aligned_cols=210 Identities=13% Similarity=0.117 Sum_probs=121.9
Q ss_pred hHHHHHHHHHHhhhc-CCCcEEEEcCcEEEEEeEEecCCCcccEEEEEeeEEEecCCcCCcCCCcceEEEEeeeeEEEEc
Q 047322 41 ATQAFLRAWSSACYS-NSPATLHVPRGLFLVKSISFNGPCRHRIVFQIDGTIIAPSSYWSLGNSGFWILFYKVNRLSIHG 119 (343)
Q Consensus 41 dt~Aiq~Ai~~a~~~-~~g~~V~ip~G~Y~~~~l~l~~~~ks~~~l~~~g~l~~~~~~~~~~~~~~~i~~~~~~ni~I~G 119 (343)
|-.-||+||+++... ...-+|+|.+|+|. ..+.+... |.+++|.++|. ....|.+
T Consensus 289 ~f~TI~~Av~a~p~~~~~r~vI~ik~G~Y~-E~V~i~~~-k~~i~l~G~g~----------------------~~tiIt~ 344 (586)
T PLN02314 289 DVKTINEAVASIPKKSKSRFVIYVKEGTYV-ENVLLDKS-KWNVMIYGDGK----------------------DKTIISG 344 (586)
T ss_pred CccCHHHHHhhccccCCceEEEEEcCceEE-EEEEecCC-CceEEEEecCC----------------------CCcEEEe
Confidence 355799999765322 22347899999997 34545322 56777777652 0111111
Q ss_pred --ceEeCCCCccccccCCCCCCCCCceEEEEEecCcEEEEeeEEecCCc----cEEE-EeceecEEEEeEEEECCCCCCC
Q 047322 120 --GTIDATGAGYWACRKSGKSCPPPTRSISFVGASNIVVSGLTSINSRF----FHIA-IDECVNIMLRKLKINAPSWSPN 192 (343)
Q Consensus 120 --G~idg~g~~~w~~~~~~~~~~~~~~~i~~~~~~nv~i~~v~i~n~~~----~~i~-~~~~~~v~i~~~~i~~~~~~~~ 192 (343)
-..||.. .-...-.....+++..++++|.|... ..+- -...+...+.+|+|.+.++
T Consensus 345 ~~~~~~g~~--------------t~~saT~~v~~~~F~a~~itf~Ntag~~~~QAvAlrv~~D~~~f~~c~~~G~QD--- 407 (586)
T PLN02314 345 SLNFVDGTP--------------TFSTATFAAAGKGFIAKDMGFINTAGAAKHQAVAFRSGSDMSVFYQCSFDAFQD--- 407 (586)
T ss_pred cCCcCCCCC--------------ccceEEEEEEcCCeEEEeeEEEECCCCCCCceEEEEecCCcEEEEeeEEEeccc---
Confidence 0011110 01122333467899999999998743 2222 3457888999999998554
Q ss_pred CCeeeeeCcccEEEEccEEecCCceEEeCCCceeEEEEeeEEcCC------ceEEEeecccCcCcccccCcEEEEEEEce
Q 047322 193 TDGIHIQSSSGITISNSAIMTGDDCISVGPGTKNLWIERIACGPG------HGIRMKKALAALGPMLLKMVLKNVTVTDS 266 (343)
Q Consensus 193 ~DGi~~~~s~nv~I~n~~i~~~dD~i~i~~~~~ni~i~n~~~~~~------~gi~i~~~~gs~g~~~~~~~~~ni~i~n~ 266 (343)
-+... +.+-..++|+|...=|-| + |.-...++||.+..- .+ .| ...|.. +...-..+.|.||
T Consensus 408 --TLy~~-~~rq~y~~C~I~GtvDFI-F--G~a~avf~~c~i~~~~~~~~~~~-~i----TA~~r~-~~~~~~G~vf~~c 475 (586)
T PLN02314 408 --TLYAH-SNRQFYRDCDITGTIDFI-F--GNAAVVFQNCNIQPRQPLPNQFN-TI----TAQGKK-DPNQNTGISIQRC 475 (586)
T ss_pred --hheeC-CCCEEEEeeEEEecccee-c--cCceeeeeccEEEEecCCCCCCc-eE----ecCCCC-CCCCCCEEEEEee
Confidence 34333 346788999999866654 2 445889999998631 13 22 223322 1234578999999
Q ss_pred EEeCCceEEEEEeecCCCCceEEeEEEEeEEEecCCee
Q 047322 267 IFTGTQNGVRIKTWARPSNGFARNIRFRNIIMTKVFNP 304 (343)
Q Consensus 267 ~~~~~~~gi~i~~~~~~~~g~i~nI~~~ni~~~~~~~~ 304 (343)
++..... +..+++=|-+=..-..+.|.+..+.+.=.|
T Consensus 476 ~i~~~~~-~~~~~yLGRpW~~ysr~v~~~s~i~~~I~p 512 (586)
T PLN02314 476 TISAFGN-LTAPTYLGRPWKDFSTTVIMQSYIGSFLNP 512 (586)
T ss_pred EEecCCc-ccccccccCCCCCCceEEEEecccCCcccc
Confidence 9988542 111111110112346788888888775444
No 71
>PLN02217 probable pectinesterase/pectinesterase inhibitor
Probab=97.55 E-value=0.01 Score=60.11 Aligned_cols=205 Identities=12% Similarity=0.067 Sum_probs=114.4
Q ss_pred hHHHHHHHHHHhhhc-CCCcEEEEcCcEEEEEeEEecCCCcccEEEEEeeEEEecCCcCCcCCCcceEEEEeeeeEEEEc
Q 047322 41 ATQAFLRAWSSACYS-NSPATLHVPRGLFLVKSISFNGPCRHRIVFQIDGTIIAPSSYWSLGNSGFWILFYKVNRLSIHG 119 (343)
Q Consensus 41 dt~Aiq~Ai~~a~~~-~~g~~V~ip~G~Y~~~~l~l~~~~ks~~~l~~~g~l~~~~~~~~~~~~~~~i~~~~~~ni~I~G 119 (343)
|=.-||+||+++... ...-+|+|.+|+|+ ..+.+... |.+++|..+|. ....|.+
T Consensus 261 ~f~TIq~Av~a~P~~~~~r~vI~Ik~GvY~-E~V~I~~~-k~~i~l~Gdg~----------------------~~TiIt~ 316 (670)
T PLN02217 261 QYKTINEALNFVPKKKNTTFVVHIKAGIYK-EYVQVNRS-MTHLVFIGDGP----------------------DKTVISG 316 (670)
T ss_pred CccCHHHHHHhccccCCceEEEEEeCCceE-EEEEEcCC-CCcEEEEecCC----------------------CCeEEEc
Confidence 356799999765322 22347899999997 34455322 45666666641 0111111
Q ss_pred c--eEeCCCCccccccCCCCCCCCCceEEEEEecCcEEEEeeEEecCCc----cEEE-EeceecEEEEeEEEECCCCCCC
Q 047322 120 G--TIDATGAGYWACRKSGKSCPPPTRSISFVGASNIVVSGLTSINSRF----FHIA-IDECVNIMLRKLKINAPSWSPN 192 (343)
Q Consensus 120 G--~idg~g~~~w~~~~~~~~~~~~~~~i~~~~~~nv~i~~v~i~n~~~----~~i~-~~~~~~v~i~~~~i~~~~~~~~ 192 (343)
. .-||.+ ..+. .-.....+++..+|++|+|... ..+- ....+...+.+|+|...+|
T Consensus 317 ~~~~~dg~~-------------T~~S-AT~~v~g~~F~a~nitf~Ntag~~~~QAVAlrv~~Dra~fy~C~f~G~QD--- 379 (670)
T PLN02217 317 SKSYKDGIT-------------TYKT-ATVAIVGDHFIAKNIGFENTAGAIKHQAVAIRVLSDESIFYNCKFDGYQD--- 379 (670)
T ss_pred CCccCCCCC-------------ccce-EEEEEECCCeEEEeeEEEeCCCCCCCceEEEEecCCcEEEEcceeeeccc---
Confidence 0 001100 0112 2233357889999999988643 2222 3457888999999997543
Q ss_pred CCeeeeeCcccEEEEccEEecCCceEEeCCCceeEEEEeeEEcCC-----ceEEEeecccCcCcccccCcEEEEEEEceE
Q 047322 193 TDGIHIQSSSGITISNSAIMTGDDCISVGPGTKNLWIERIACGPG-----HGIRMKKALAALGPMLLKMVLKNVTVTDSI 267 (343)
Q Consensus 193 ~DGi~~~~s~nv~I~n~~i~~~dD~i~i~~~~~ni~i~n~~~~~~-----~gi~i~~~~gs~g~~~~~~~~~ni~i~n~~ 267 (343)
-+... ..+-.+++|+|...=|-|. |.-...++||.+..- ..-.| ...|... ...-..+.|.||+
T Consensus 380 --TLy~~-~~Rqyy~~C~I~GtVDFIF---G~a~avfq~C~I~~r~~~~~~~~~I----TAqgr~~-~~~~tGfvf~~C~ 448 (670)
T PLN02217 380 --TLYAH-SHRQFYRDCTISGTIDFLF---GDAAAVFQNCTLLVRKPLLNQACPI----TAHGRKD-PRESTGFVLQGCT 448 (670)
T ss_pred --hhccC-CCcEEEEeCEEEEeccEEe---cCceEEEEccEEEEccCCCCCceeE----ecCCCCC-CCCCceEEEEeeE
Confidence 23332 2467888999887655442 345788888888531 11222 2233221 2234678999999
Q ss_pred EeCCce--------EEEEEeecCCCCceEEeEEEEeEEEecC
Q 047322 268 FTGTQN--------GVRIKTWARPSNGFARNIRFRNIIMTKV 301 (343)
Q Consensus 268 ~~~~~~--------gi~i~~~~~~~~g~i~nI~~~ni~~~~~ 301 (343)
+..... -.+++- .=..-..+.|.+..|.+.
T Consensus 449 i~~~~~~~~~~~~~~~yLGR----PW~~ysrvVf~~t~l~~~ 486 (670)
T PLN02217 449 IVGEPDYLAVKETSKAYLGR----PWKEYSRTIIMNTFIPDF 486 (670)
T ss_pred EecCccccccccccceeecc----CCCCCceEEEEecccCCe
Confidence 887531 122221 112346777777777654
No 72
>COG4677 PemB Pectin methylesterase [Carbohydrate transport and metabolism]
Probab=97.37 E-value=0.013 Score=53.43 Aligned_cols=227 Identities=13% Similarity=0.138 Sum_probs=114.0
Q ss_pred chHHHHHHHHHHhhhcCC--CcEEEEcCcEEEEEeEEecCCCcccEEEEEeeEEEecCCcCCcCCCcceEEEEeeeeEEE
Q 047322 40 DATQAFLRAWSSACYSNS--PATLHVPRGLFLVKSISFNGPCRHRIVFQIDGTIIAPSSYWSLGNSGFWILFYKVNRLSI 117 (343)
Q Consensus 40 Ddt~Aiq~Ai~~a~~~~~--g~~V~ip~G~Y~~~~l~l~~~~ks~~~l~~~g~l~~~~~~~~~~~~~~~i~~~~~~ni~I 117 (343)
++-..||+|+++|..+.+ ...+.+.+|.|. +.+.+..+ ...++|+.++. ++. ...|.+ ..
T Consensus 92 ~~f~TIQaAvdaA~~~~~~kr~yI~vk~GvY~-e~v~Vp~~-~~~ITLyGed~-----~~~-----~tvIg~------n~ 153 (405)
T COG4677 92 VTFTTIQAAVDAAIIKRTNKRQYIAVKAGVYQ-ETVYVPAA-PGGITLYGEDE-----KPI-----DTVIGL------NL 153 (405)
T ss_pred cchHHHHHHHhhhcccCCCceEEEEEccceec-eeEEecCC-CCceeEEecCC-----CCc-----ceEEEE------ec
Confidence 677789999988755544 345556899996 34444321 12377766631 000 000000 00
Q ss_pred EcceEeCCCCccccccCCCCC-CCCCceEEEEEecCcEEEEeeEEecCCccE---------EEEeceecEEEEeEEEECC
Q 047322 118 HGGTIDATGAGYWACRKSGKS-CPPPTRSISFVGASNIVVSGLTSINSRFFH---------IAIDECVNIMLRKLKINAP 187 (343)
Q Consensus 118 ~GG~idg~g~~~w~~~~~~~~-~~~~~~~i~~~~~~nv~i~~v~i~n~~~~~---------i~~~~~~~v~i~~~~i~~~ 187 (343)
.+|.....+..|=.+..+... ...--..-.+..-+++..++++++|....+ ..-...+.+.+++|++...
T Consensus 154 aagp~np~~~m~n~c~ss~~~tigt~~Sat~~v~~ndf~~~nlT~en~~gd~~lagn~~AVaL~~dgDka~frnv~llg~ 233 (405)
T COG4677 154 AAGPGNPAGYMYNSCQSSRSATIGTLCSATFWVQNNDFQLQNLTIENTLGDGVLAGNHPAVALATDGDKAIFRNVNLLGN 233 (405)
T ss_pred CCCCCCccceeecccccchhhhhhhhhhhhheeecCCcccccceeecccCCccccCCceeEEEEecCCceeeeeeeEeec
Confidence 111111111111111100000 000001123344567777888887754433 2234667889999999874
Q ss_pred CCCCCCCeeeeeCc----------c-cEEEEccEEecCCceEEeCCCceeEEEEeeEEcC------CceEEEeecccCcC
Q 047322 188 SWSPNTDGIHIQSS----------S-GITISNSAIMTGDDCISVGPGTKNLWIERIACGP------GHGIRMKKALAALG 250 (343)
Q Consensus 188 ~~~~~~DGi~~~~s----------~-nv~I~n~~i~~~dD~i~i~~~~~ni~i~n~~~~~------~~gi~i~~~~gs~g 250 (343)
++ -+....+ + +-.++||+|...-|-| .++.-+.+.+|.|.. -.|.-.++ |
T Consensus 234 Qd-----TlFv~~~~~~~~~~tn~~~R~yftNsyI~GdvDfI---fGsgtaVFd~c~i~~~d~r~~~~gYIfAp---S-- 300 (405)
T COG4677 234 QD-----TLFVGNSGVQNRLETNRQPRTYFTNSYIEGDVDFI---FGSGTAVFDNCEIQVVDSRTQQEGYIFAP---S-- 300 (405)
T ss_pred cc-----eEEecCCCCccccccCcchhhheecceecccceEE---eccceEEeccceEEEeccCCCcceeEecc---C--
Confidence 43 2322221 2 5678999998654543 345567888888742 12533311 1
Q ss_pred cccccCcEEEEEEEceEEeCCce--EEEEE-eecCCCCceEEeEEEEeEEEec
Q 047322 251 PMLLKMVLKNVTVTDSIFTGTQN--GVRIK-TWARPSNGFARNIRFRNIIMTK 300 (343)
Q Consensus 251 ~~~~~~~~~ni~i~n~~~~~~~~--gi~i~-~~~~~~~g~i~nI~~~ni~~~~ 300 (343)
...+..-...+-|++|.-... -+.++ .|.. ....+..+.|++..|..
T Consensus 301 --T~~~~~YGflalNsrfna~g~~~s~~LGRpwd~-~a~~nGQvVirds~m~e 350 (405)
T COG4677 301 --TLSGIPYGFLALNSRFNASGDAGSAQLGRPWDV-DANTNGQVVIRDSVMGE 350 (405)
T ss_pred --CCCCCceeEEEEeeeeecCCCCCeeeecCcccc-ccccCceEEEEeccccc
Confidence 123345677888888876433 23332 2221 22345567788877753
No 73
>PF01696 Adeno_E1B_55K: Adenovirus EB1 55K protein / large t-antigen; InterPro: IPR002612 This family consists of adenovirus E1B 55 kDa protein or large t-antigen. E1B 55 kDa binds p53 the tumor suppressor protein converting it from a transcriptional activator which responds to damaged DNA in to an unregulated repressor of genes with a p53 binding site []. This protects the virus against p53 induced host antiviral responses and prevents apoptosis as induced by the adenovirus E1A protein []. The E1B region of adenovirus encodes two proteins E1B 55 kDa, the large t-antigen as found in this family and E1B 19 kDa IPR002924 from INTERPRO, the small t-antigen. Both of these proteins inhibit E1A induced apoptosis.
Probab=97.36 E-value=0.047 Score=51.49 Aligned_cols=85 Identities=13% Similarity=0.144 Sum_probs=50.9
Q ss_pred ecCcEEEEeeEEecCC-ccEEEEeceecEEEEeEEEECCCCCCCCCeeeeeCcccEEEEccEEecCCceEEeCCCceeEE
Q 047322 150 GASNIVVSGLTSINSR-FFHIAIDECVNIMLRKLKINAPSWSPNTDGIHIQSSSGITISNSAIMTGDDCISVGPGTKNLW 228 (343)
Q Consensus 150 ~~~nv~i~~v~i~n~~-~~~i~~~~~~~v~i~~~~i~~~~~~~~~DGi~~~~s~nv~I~n~~i~~~dD~i~i~~~~~ni~ 228 (343)
+-.+|++.|+.+...+ ..++.+....++++.+|.+.+.. |..+..-....|++|+|....-|+.-. +...+.
T Consensus 119 gM~~VtF~ni~F~~~~~~~g~~f~~~t~~~~hgC~F~gf~------g~cl~~~~~~~VrGC~F~~C~~gi~~~-~~~~ls 191 (386)
T PF01696_consen 119 GMEGVTFVNIRFEGRDTFSGVVFHANTNTLFHGCSFFGFH------GTCLESWAGGEVRGCTFYGCWKGIVSR-GKSKLS 191 (386)
T ss_pred eeeeeEEEEEEEecCCccceeEEEecceEEEEeeEEecCc------ceeEEEcCCcEEeeeEEEEEEEEeecC-CcceEE
Confidence 4456777777776655 55666777777777777777632 123333346677777776655555333 245666
Q ss_pred EEeeEEcCCc-eEE
Q 047322 229 IERIACGPGH-GIR 241 (343)
Q Consensus 229 i~n~~~~~~~-gi~ 241 (343)
|++|+|+.-. |+.
T Consensus 192 Vk~C~FekC~igi~ 205 (386)
T PF01696_consen 192 VKKCVFEKCVIGIV 205 (386)
T ss_pred eeheeeeheEEEEE
Confidence 6777776543 553
No 74
>PF00544 Pec_lyase_C: Pectate lyase; InterPro: IPR002022 Pectate lyase 4.2.2.2 from EC is an enzyme involved in the maceration and soft rotting of plant tissue. Pectate lyase is responsible for the eliminative cleavage of pectate, yielding oligosaccharides with 4-deoxy-alpha-D-mann-4-enuronosyl groups at their non-reducing ends. The protein is maximally expressed late in pollen development. It has been suggested that the pollen expression of pectate lyase genes might relate to a requirement for pectin degradation during pollen tube growth []. The structure and the folding kinetics of one member of this family, pectate lyase C (pelC)1 from Erwinia chrysanthemi has been investigated in some detail [,]. PelC contains a parallel beta-helix folding motif. The majority of the regular secondary structure is composed of parallel beta-sheets (about 30%). The individual strands of the sheets are connected by unordered loops of varying length. The backbone is then formed by a large helix composed of beta-sheets. There are two disulphide bonds in pelC and 12 proline residues. One of these prolines, Pro220, is involved in a cis peptide bond. he folding mechanism of pelC involves two slow phases that have been attributed to proline isomerization. Some of the proteins in this family are allergens. Allergies are hypersensitivity reactions of the immune system to specific substances called allergens (such as pollen, stings, drugs, or food) that, in most people, result in no symptoms. A nomenclature system has been established for antigens (allergens) that cause IgE-mediated atopic allergies in humans [WHO/IUIS Allergen Nomenclature Subcommittee King T.P., Hoffmann D., Loewenstein H., Marsh D.G., Platts-Mills T.A.E., Thomas W. Bull. World Health Organ. 72:797-806(1994)]. This nomenclature system is defined by a designation that is composed of the first three letters of the genus; a space; the first letter of the species name; a space and an arabic number. In the event that two species names have identical designations, they are discriminated from one another by adding one or more letters (as necessary) to each species designation. The allergens in this family include allergens with the following designations: Amb a 1, Amb a 2, Amb a 3, Cha o 1, Cup a 1, Cry j 1, Jun a 1. Two of the major allergens in the pollen of short ragweed (Ambrosia artemisiifolia) are Amb aI and Amb aII. The primary structure of Amb aII has been deduced and has been shown to share ~65% sequence identity with the Amb alpha I multigene family of allergens []. Members of the Amb aI/aII family include Nicotiana tabacum (Common tobacco) pectate lyase, which is similar to the deduced amino acid sequences of two pollen-specific pectate lyase genes identified in Solanum lycopersicum (Tomato) (Lycopersicon esculentum) []; Cry jI, a major allergenic glycoprotein of Cryptomeria japonica (Japanese cedar) - the most common pollen allergen in Japan []; and P56 and P59, which share sequence similarity with pectate lyases of plant pathogenic bacteria [].; PDB: 1O8M_A 1O8K_A 1O8E_A 1O8H_A 2PEC_A 1PLU_A 1O8I_A 1O8J_A 1O8D_A 1O8F_A ....
Probab=97.30 E-value=0.0022 Score=55.67 Aligned_cols=116 Identities=22% Similarity=0.291 Sum_probs=73.5
Q ss_pred EecCcEEEEeeEEec---------------CCccEEEEeceecEEEEeEEEECCCC---CCCCCe-eeee-CcccEEEEc
Q 047322 149 VGASNIVVSGLTSIN---------------SRFFHIAIDECVNIMLRKLKINAPSW---SPNTDG-IHIQ-SSSGITISN 208 (343)
Q Consensus 149 ~~~~nv~i~~v~i~n---------------~~~~~i~~~~~~~v~i~~~~i~~~~~---~~~~DG-i~~~-~s~nv~I~n 208 (343)
.+++||.|++++|++ ...+++.+..+++|.|++|.+..... ....|| +++. .+.+|+|.+
T Consensus 43 ~~~~NVIirNl~~~~~~~~~~~~~~~~~~~~~~Dai~i~~~~nVWIDH~sfs~~~~~~~~~~~Dg~idi~~~s~~vTiS~ 122 (200)
T PF00544_consen 43 KGASNVIIRNLRFRNVPVDPGPDWSGDGDSSDGDAISIDNSSNVWIDHCSFSWGNFECNSDSSDGLIDIKKGSDNVTISN 122 (200)
T ss_dssp ESCEEEEEES-EEECEEEECSTEEETTEEECS--SEEEESTEEEEEES-EEEETTS-GGGSSSSSSEEEESSTEEEEEES
T ss_pred cCCCeEEEECCEEEeccccCCcccCCCccccCCCeEEEEecccEEEeccEEeccccccccccCCceEEEEeCCceEEEEc
Confidence 489999999999988 24467999999999999999996411 112565 5665 578999999
Q ss_pred cEEecCCceEEeCCC-------ceeEEEEeeEEcCCce--EEEeecccCcCcccccCcEEEEEEEceEEeC-CceEEEEE
Q 047322 209 SAIMTGDDCISVGPG-------TKNLWIERIACGPGHG--IRMKKALAALGPMLLKMVLKNVTVTDSIFTG-TQNGVRIK 278 (343)
Q Consensus 209 ~~i~~~dD~i~i~~~-------~~ni~i~n~~~~~~~g--i~i~~~~gs~g~~~~~~~~~ni~i~n~~~~~-~~~gi~i~ 278 (343)
|.|...+.+..+++. ..++++.+|.|..... =.+ ....+++-|+.+.+ ..+++...
T Consensus 123 n~f~~~~k~~l~G~~d~~~~~~~~~vT~hhN~f~~~~~R~P~~--------------r~G~~Hv~NN~~~~~~~y~i~~~ 188 (200)
T PF00544_consen 123 NIFDNHNKTMLIGSSDSNSTDRGLRVTFHHNYFANTNSRNPRV--------------RFGYVHVYNNYYYNWSGYAIGAR 188 (200)
T ss_dssp -EEEEEEETCEESSCTTCGGGTTEEEEEES-EEEEEEE-TTEE--------------CSCEEEEES-EEEEECSESEEEE
T ss_pred hhccccccccccCCCCCccccCCceEEEEeEEECchhhCCCcc--------------cccEEEEEEeeeECCCCEEEEcc
Confidence 999765444434332 3689999999864321 011 11357777886665 45566665
No 75
>PF12218 End_N_terminal: N terminal extension of bacteriophage endosialidase; InterPro: IPR024429 This entry represents the N-terminal extension domain of endosialidases which is approximately 70 amino acids in length. The two N-terminal domains (this domain and the beta propeller) assemble in the compact 'cap' whereas the C-terminal domain forms an extended tail-like structure. The very N-terminal part of the 'cap' region (residues 246 to 312) holds the only alpha-helix of the protein and is presumably the residual part of the deleted N-terminal head-binding domain [].; PDB: 3JU4_A 3GVL_A 3GVK_B 3GVJ_A 1V0E_B 1V0F_E.
Probab=97.11 E-value=0.00065 Score=45.85 Aligned_cols=37 Identities=30% Similarity=0.278 Sum_probs=22.3
Q ss_pred ccCCCCcchHHHHHHHHHHhhhcCCCcEEEEcCc-EEEEEeE
Q 047322 33 AKPDGKSDATQAFLRAWSSACYSNSPATLHVPRG-LFLVKSI 73 (343)
Q Consensus 33 A~gdg~tDdt~Aiq~Ai~~a~~~~~g~~V~ip~G-~Y~~~~l 73 (343)
|+|||+||||+||.+|+++. ..|. ++=..| ||.+.+|
T Consensus 1 A~GDGvtdDt~A~~a~l~a~---~~g~-~IDg~GlTykVs~l 38 (67)
T PF12218_consen 1 AKGDGVTDDTAAITAALEAS---PVGR-KIDGAGLTYKVSSL 38 (67)
T ss_dssp ---CCCCE-HHHHHHHHHHS----TTS--EE-TT-EEEESS-
T ss_pred CCCccccCcHHHHHHHHhcc---CCCe-EEecCCceEEEeeC
Confidence 78999999999999999653 3343 444455 6988764
No 76
>COG3420 NosD Nitrous oxidase accessory protein [Inorganic ion transport and metabolism]
Probab=96.31 E-value=0.44 Score=44.03 Aligned_cols=118 Identities=15% Similarity=0.119 Sum_probs=76.3
Q ss_pred EEeeeeEEEEcceEeCCCCccccccCCCCCCCCCceEEEEEecCcEEEEeeEEecCCccEEEEeceecEEEEeEEEECCC
Q 047322 109 FYKVNRLSIHGGTIDATGAGYWACRKSGKSCPPPTRSISFVGASNIVVSGLTSINSRFFHIAIDECVNIMLRKLKINAPS 188 (343)
Q Consensus 109 ~~~~~ni~I~GG~idg~g~~~w~~~~~~~~~~~~~~~i~~~~~~nv~i~~v~i~n~~~~~i~~~~~~~v~i~~~~i~~~~ 188 (343)
..+..++.|+|-++.|... .....|...|++.++++..|.+-.|... .++|....++.-.+++.+++.
T Consensus 125 l~~s~d~~i~~n~i~G~~~---------~r~~~rGnGI~vyNa~~a~V~~ndisy~-rDgIy~~~S~~~~~~gnr~~~-- 192 (408)
T COG3420 125 LHGSADVRIEGNTIQGLAD---------LRVAERGNGIYVYNAPGALVVGNDISYG-RDGIYSDTSQHNVFKGNRFRD-- 192 (408)
T ss_pred EeccCceEEEeeEEeeccc---------cchhhccCceEEEcCCCcEEEcCccccc-cceEEEcccccceecccchhh--
Confidence 3445566666644444321 1223455678888888888888777543 477888888888888888775
Q ss_pred CCCCCCeeeeeCcccEEEEccEEecCCceEEeCCCceeEEEEeeEEcC--CceEEE
Q 047322 189 WSPNTDGIHIQSSSGITISNSAIMTGDDCISVGPGTKNLWIERIACGP--GHGIRM 242 (343)
Q Consensus 189 ~~~~~DGi~~~~s~nv~I~n~~i~~~dD~i~i~~~~~ni~i~n~~~~~--~~gi~i 242 (343)
-.-|.|.-.+.+..++++..+...-++++-- +++++|+++.-++ .||+-+
T Consensus 193 ---~RygvHyM~t~~s~i~dn~s~~N~vG~ALMy-s~~l~V~~nrS~Gnrd~Gill 244 (408)
T COG3420 193 ---LRYGVHYMYTNDSRISDNSSRDNRVGYALMY-SDRLKVSDNRSSGNRDHGILL 244 (408)
T ss_pred ---eeeeEEEEeccCcEeecccccCCcceEEEEE-eccEEEEcCcccCccccceee
Confidence 2346777777777777777766666666653 6777777776554 245544
No 77
>PF03211 Pectate_lyase: Pectate lyase; InterPro: IPR004898 Pectate lyase is responsible for the maceration and soft-rotting of plant tissue. It catalyses the eliminative cleavage of pectate to produce oligosaccharides with 4-deoxy-alpha-D-gluc-4-enuronosyl groups at their non-reducing ends. Pectate lyase is an extracellular enzyme and is induced by pectin. It is subject to self-catabolite repression, and has been implicated in plant disease. The structure and the folding kinetics of one member of this family, pectate lyase C (pelC)1 from Erwinia chrysanthemi has been investigated in some detail []. PelC contains a parallel beta-helix folding motif. The majority of the regular secondary structure is composed of parallel beta-sheets (about 30%). The individual strands of the sheets are connected by unordered loops of varying length. The backbone is then formed by a large helix composed of beta-sheets. There are two disulphide bonds in pelC and 12 proline residues. One of these prolines, Pro220, is involved in a cis peptide bond. he folding mechanism of pelC involves two slow phases that have been attributed to proline isomerization.; GO: 0030570 pectate lyase activity, 0005576 extracellular region; PDB: 3T9G_B 3B90_B 3B8Y_A 3B4N_B 1EE6_A.
Probab=95.62 E-value=0.74 Score=40.16 Aligned_cols=74 Identities=11% Similarity=0.060 Sum_probs=33.2
Q ss_pred CcEEEEeeEEecCCccEEEEeceecEEEEeEEEECCCCCCCCCeeeeeCcc-cEEEEccEEecCCceEEeCCCceeEEEE
Q 047322 152 SNIVVSGLTSINSRFFHIAIDECVNIMLRKLKINAPSWSPNTDGIHIQSSS-GITISNSAIMTGDDCISVGPGTKNLWIE 230 (343)
Q Consensus 152 ~nv~i~~v~i~n~~~~~i~~~~~~~v~i~~~~i~~~~~~~~~DGi~~~~s~-nv~I~n~~i~~~dD~i~i~~~~~ni~i~ 230 (343)
+..+|+++.|-.....+||... +.+|+|+.++. -..|.+.+.+.. .++|.+.-.+..+|-|-=..+.-.+.|+
T Consensus 61 ~GatlkNvIiG~~~~dGIHC~G--~Ctl~NVwwed----VcEDA~T~kg~~~~~~I~ggga~~A~DKV~Q~Ng~Gtv~I~ 134 (215)
T PF03211_consen 61 DGATLKNVIIGANQADGIHCKG--SCTLENVWWED----VCEDAATFKGDGGTVTIIGGGARNASDKVFQHNGGGTVTIK 134 (215)
T ss_dssp TTEEEEEEEETSS-TT-EEEES--CEEEEEEEESS-----SSESEEEESSEEEEEEESTEEEEEEEEEEEE-SSEEEEEE
T ss_pred CCCEEEEEEEcCCCcCceEEcC--CEEEEEEEecc----cceeeeEEcCCCceEEEeCCcccCCCccEEEecCceeEEEE
Confidence 5666666666444445555544 44555555554 122444444433 4444444444444443333333344444
Q ss_pred e
Q 047322 231 R 231 (343)
Q Consensus 231 n 231 (343)
|
T Consensus 135 n 135 (215)
T PF03211_consen 135 N 135 (215)
T ss_dssp E
T ss_pred e
Confidence 4
No 78
>PLN02480 Probable pectinesterase
Probab=95.23 E-value=2.8 Score=39.50 Aligned_cols=113 Identities=6% Similarity=-0.002 Sum_probs=76.7
Q ss_pred EeceecEEEEeEEEECCCC-----CCCCCeeeee-CcccEEEEccEEecCCceEEeCCCceeEEEEeeEEcCCceEEEee
Q 047322 171 IDECVNIMLRKLKINAPSW-----SPNTDGIHIQ-SSSGITISNSAIMTGDDCISVGPGTKNLWIERIACGPGHGIRMKK 244 (343)
Q Consensus 171 ~~~~~~v~i~~~~i~~~~~-----~~~~DGi~~~-~s~nv~I~n~~i~~~dD~i~i~~~~~ni~i~n~~~~~~~gi~i~~ 244 (343)
.....+++++|++|++... .....++.+. .+.++.+++|.+....|-+.... ..-.++||++.+.-.+-+
T Consensus 128 tV~a~~f~a~nLTf~Nta~~g~~~~~~~QAVAl~v~gDra~f~~c~f~G~QDTLy~~~--gR~yf~~C~IeG~VDFIF-- 203 (343)
T PLN02480 128 TVEAPHFVAFGISIRNDAPTGMAFTSENQSVAAFVGADKVAFYHCAFYSTHNTLFDYK--GRHYYHSCYIQGSIDFIF-- 203 (343)
T ss_pred EEECCCEEEEeeEEEecCCCCCCCCCCCceEEEEecCCcEEEEeeEEecccceeEeCC--CCEEEEeCEEEeeeeEEc--
Confidence 3456789999999998521 1123456653 56899999999999889887654 467999999998767655
Q ss_pred cccCcCcccccCcEEEEEEEceEEeCCc------eEEEEEeecCCCCceEEeEEEEeEEEecC
Q 047322 245 ALAALGPMLLKMVLKNVTVTDSIFTGTQ------NGVRIKTWARPSNGFARNIRFRNIIMTKV 301 (343)
Q Consensus 245 ~~gs~g~~~~~~~~~ni~i~n~~~~~~~------~gi~i~~~~~~~~g~i~nI~~~ni~~~~~ 301 (343)
|. ....|+||++.... .| .|..... ....-....|.|+++...
T Consensus 204 --G~----------g~a~fe~C~i~s~~~~~~~~~G-~ITA~~r-~~~~~~GfvF~~C~i~g~ 252 (343)
T PLN02480 204 --GR----------GRSIFHNCEIFVIADRRVKIYG-SITAHNR-ESEDNSGFVFIKGKVYGI 252 (343)
T ss_pred --cc----------eeEEEEccEEEEecCCCCCCce-EEEcCCC-CCCCCCEEEEECCEEccc
Confidence 43 46789999987532 13 2332221 112334577999999874
No 79
>PF03211 Pectate_lyase: Pectate lyase; InterPro: IPR004898 Pectate lyase is responsible for the maceration and soft-rotting of plant tissue. It catalyses the eliminative cleavage of pectate to produce oligosaccharides with 4-deoxy-alpha-D-gluc-4-enuronosyl groups at their non-reducing ends. Pectate lyase is an extracellular enzyme and is induced by pectin. It is subject to self-catabolite repression, and has been implicated in plant disease. The structure and the folding kinetics of one member of this family, pectate lyase C (pelC)1 from Erwinia chrysanthemi has been investigated in some detail []. PelC contains a parallel beta-helix folding motif. The majority of the regular secondary structure is composed of parallel beta-sheets (about 30%). The individual strands of the sheets are connected by unordered loops of varying length. The backbone is then formed by a large helix composed of beta-sheets. There are two disulphide bonds in pelC and 12 proline residues. One of these prolines, Pro220, is involved in a cis peptide bond. he folding mechanism of pelC involves two slow phases that have been attributed to proline isomerization.; GO: 0030570 pectate lyase activity, 0005576 extracellular region; PDB: 3T9G_B 3B90_B 3B8Y_A 3B4N_B 1EE6_A.
Probab=95.12 E-value=2.1 Score=37.42 Aligned_cols=129 Identities=18% Similarity=0.159 Sum_probs=77.8
Q ss_pred ecEEEEeEEEECCCCCCCCCeeeeeCcccEEEEccEEec-CCceEEeCCCceeEEEEeeEEcCCce--EEEeecccCcCc
Q 047322 175 VNIMLRKLKINAPSWSPNTDGIHIQSSSGITISNSAIMT-GDDCISVGPGTKNLWIERIACGPGHG--IRMKKALAALGP 251 (343)
Q Consensus 175 ~~v~i~~~~i~~~~~~~~~DGi~~~~s~nv~I~n~~i~~-~dD~i~i~~~~~ni~i~n~~~~~~~g--i~i~~~~gs~g~ 251 (343)
...+++|+.|-. +..||||..+ +-+|+|+.... +.|++.++..+..++|.+.-..+... +.. .
T Consensus 61 ~GatlkNvIiG~----~~~dGIHC~G--~Ctl~NVwwedVcEDA~T~kg~~~~~~I~ggga~~A~DKV~Q~------N-- 126 (215)
T PF03211_consen 61 DGATLKNVIIGA----NQADGIHCKG--SCTLENVWWEDVCEDAATFKGDGGTVTIIGGGARNASDKVFQH------N-- 126 (215)
T ss_dssp TTEEEEEEEETS----S-TT-EEEES--CEEEEEEEESS-SSESEEEESSEEEEEEESTEEEEEEEEEEEE---------
T ss_pred CCCEEEEEEEcC----CCcCceEEcC--CEEEEEEEecccceeeeEEcCCCceEEEeCCcccCCCccEEEe------c--
Confidence 346888888864 4669999987 67888888754 89999999865577777776655443 333 1
Q ss_pred ccccCcEEEEEEEceEEeCCceEEEEEeec--CCCCceEEeEEEEeEEEecCCeeEEEEeeeCCCCCCCCCCCceEEEeE
Q 047322 252 MLLKMVLKNVTVTDSIFTGTQNGVRIKTWA--RPSNGFARNIRFRNIIMTKVFNPIIIDQNYCPDNHCPHQTSGVTISGV 329 (343)
Q Consensus 252 ~~~~~~~~ni~i~n~~~~~~~~gi~i~~~~--~~~~g~i~nI~~~ni~~~~~~~~i~i~~~~~~~~~~~~~~~~~~i~~I 329 (343)
.--.+.|.|....+ .|-..++-. ...++.=|.|.+++........-..|-.+|++ ..+|+++
T Consensus 127 -----g~Gtv~I~nF~a~d--~GKl~RSCGnC~~~~~~~r~v~v~~~~~~~~~~~~giN~N~gD---------~ati~~~ 190 (215)
T PF03211_consen 127 -----GGGTVTIKNFYAED--FGKLYRSCGNCSNNGGPRRHVVVNNVVAGPGNSLVGINRNYGD---------TATISNS 190 (215)
T ss_dssp -----SSEEEEEEEEEEEE--EEEEEEE-TTETS----EEEEEEEEEEEEEEEEEEEEEEGGTT---------TEEEEEE
T ss_pred -----CceeEEEEeEEEcC--CCEEEEeCCCCCCCCCcceEEEEeeEEecCCcEEEEEECCCCC---------eEEEEEE
Confidence 11356666655443 354555431 11123457788887765443333445556653 4578888
Q ss_pred EEEe
Q 047322 330 TYRN 333 (343)
Q Consensus 330 ~~~n 333 (343)
+++.
T Consensus 191 ~~~~ 194 (215)
T PF03211_consen 191 CIKG 194 (215)
T ss_dssp EEEE
T ss_pred EecC
Confidence 8775
No 80
>TIGR03804 para_beta_helix parallel beta-helix repeat (two copies). This model represents a tandem pair of an approximately 22-amino acid (each) repeat homologous to the beta-strand repeats that stack in a right-handed parallel beta-helix in the periplasmic C-5 mannuronan epimerase, AlgA, of Pseudomonas aeruginosa. A homology domain consisting of a longer tandem array of these repeats is described in the SMART database as CASH (SM00722), and is found in many carbohydrate-binding proteins and sugar hydrolases. A single repeat is represented by SM00710. This TIGRFAMs model represents a flavor of the parallel beta-helix-forming repeat based on prokaryotic sequences only in its seed alignment, although it also finds many eukaryotic sequences.
Probab=94.50 E-value=0.06 Score=34.33 Aligned_cols=39 Identities=23% Similarity=0.215 Sum_probs=17.4
Q ss_pred eeeeeCcccEEEEccEEecCCceEEeCCCceeEEEEeeEE
Q 047322 195 GIHIQSSSGITISNSAIMTGDDCISVGPGTKNLWIERIAC 234 (343)
Q Consensus 195 Gi~~~~s~nv~I~n~~i~~~dD~i~i~~~~~ni~i~n~~~ 234 (343)
||.++.+.+.+|+++.+....|||.+.. +.+-+|+++++
T Consensus 1 GI~l~~s~~~~i~~N~i~~~~~GI~~~~-s~~n~i~~N~~ 39 (44)
T TIGR03804 1 GIYLESSSNNTLENNTASNNSYGIYLTD-SSNNTLSNNTA 39 (44)
T ss_pred CEEEEecCCCEEECcEEeCCCCEEEEEe-CCCCEeECCEE
Confidence 3444444444455555444444544443 23334444433
No 81
>TIGR03804 para_beta_helix parallel beta-helix repeat (two copies). This model represents a tandem pair of an approximately 22-amino acid (each) repeat homologous to the beta-strand repeats that stack in a right-handed parallel beta-helix in the periplasmic C-5 mannuronan epimerase, AlgA, of Pseudomonas aeruginosa. A homology domain consisting of a longer tandem array of these repeats is described in the SMART database as CASH (SM00722), and is found in many carbohydrate-binding proteins and sugar hydrolases. A single repeat is represented by SM00710. This TIGRFAMs model represents a flavor of the parallel beta-helix-forming repeat based on prokaryotic sequences only in its seed alignment, although it also finds many eukaryotic sequences.
Probab=94.23 E-value=0.098 Score=33.30 Aligned_cols=41 Identities=27% Similarity=0.294 Sum_probs=29.4
Q ss_pred EEEEeceecEEEEeEEEECCCCCCCCCeeeeeCcccEEEEccEEec
Q 047322 168 HIAIDECVNIMLRKLKINAPSWSPNTDGIHIQSSSGITISNSAIMT 213 (343)
Q Consensus 168 ~i~~~~~~~v~i~~~~i~~~~~~~~~DGi~~~~s~nv~I~n~~i~~ 213 (343)
||.+..+.+.+|++.++.. +.|||++..+++-+|+++.+..
T Consensus 1 GI~l~~s~~~~i~~N~i~~-----~~~GI~~~~s~~n~i~~N~~~~ 41 (44)
T TIGR03804 1 GIYLESSSNNTLENNTASN-----NSYGIYLTDSSNNTLSNNTASS 41 (44)
T ss_pred CEEEEecCCCEEECcEEeC-----CCCEEEEEeCCCCEeECCEEEc
Confidence 3566677777777777775 4568888877777777777654
No 82
>PF01696 Adeno_E1B_55K: Adenovirus EB1 55K protein / large t-antigen; InterPro: IPR002612 This family consists of adenovirus E1B 55 kDa protein or large t-antigen. E1B 55 kDa binds p53 the tumor suppressor protein converting it from a transcriptional activator which responds to damaged DNA in to an unregulated repressor of genes with a p53 binding site []. This protects the virus against p53 induced host antiviral responses and prevents apoptosis as induced by the adenovirus E1A protein []. The E1B region of adenovirus encodes two proteins E1B 55 kDa, the large t-antigen as found in this family and E1B 19 kDa IPR002924 from INTERPRO, the small t-antigen. Both of these proteins inhibit E1A induced apoptosis.
Probab=91.95 E-value=7.9 Score=36.85 Aligned_cols=86 Identities=8% Similarity=0.130 Sum_probs=61.4
Q ss_pred EeceecEEEEeEEEECCCCCCCCCeeeeeCcccEEEEccEEecC-CceEEeCCCceeEEEEeeEEcCCc-eEEEeecccC
Q 047322 171 IDECVNIMLRKLKINAPSWSPNTDGIHIQSSSGITISNSAIMTG-DDCISVGPGTKNLWIERIACGPGH-GIRMKKALAA 248 (343)
Q Consensus 171 ~~~~~~v~i~~~~i~~~~~~~~~DGi~~~~s~nv~I~n~~i~~~-dD~i~i~~~~~ni~i~n~~~~~~~-gi~i~~~~gs 248 (343)
+..=.+|++.|+++...+ ...|+-+....++++.+|.|.+- -.|+... ....|++|+|.+.. |+.-
T Consensus 117 V~gM~~VtF~ni~F~~~~---~~~g~~f~~~t~~~~hgC~F~gf~g~cl~~~---~~~~VrGC~F~~C~~gi~~------ 184 (386)
T PF01696_consen 117 VVGMEGVTFVNIRFEGRD---TFSGVVFHANTNTLFHGCSFFGFHGTCLESW---AGGEVRGCTFYGCWKGIVS------ 184 (386)
T ss_pred EeeeeeeEEEEEEEecCC---ccceeEEEecceEEEEeeEEecCcceeEEEc---CCcEEeeeEEEEEEEEeec------
Confidence 444567899999999753 34578888888999999998763 3344443 46799999997653 5432
Q ss_pred cCcccccCcEEEEEEEceEEeCCceEE
Q 047322 249 LGPMLLKMVLKNVTVTDSIFTGTQNGV 275 (343)
Q Consensus 249 ~g~~~~~~~~~ni~i~n~~~~~~~~gi 275 (343)
.....+.|++|+|..+.-||
T Consensus 185 -------~~~~~lsVk~C~FekC~igi 204 (386)
T PF01696_consen 185 -------RGKSKLSVKKCVFEKCVIGI 204 (386)
T ss_pred -------CCcceEEeeheeeeheEEEE
Confidence 24577888888888875555
No 83
>PLN02698 Probable pectinesterase/pectinesterase inhibitor
Probab=90.89 E-value=4.7 Score=40.05 Aligned_cols=144 Identities=8% Similarity=-0.096 Sum_probs=86.1
Q ss_pred EEEecCcEEEEeeEEecCCcc----EEE-EeceecEEEEeEEEECCCCCCCCCeeeeeCcccEEEEccEEecCCceEEeC
Q 047322 147 SFVGASNIVVSGLTSINSRFF----HIA-IDECVNIMLRKLKINAPSWSPNTDGIHIQSSSGITISNSAIMTGDDCISVG 221 (343)
Q Consensus 147 ~~~~~~nv~i~~v~i~n~~~~----~i~-~~~~~~v~i~~~~i~~~~~~~~~DGi~~~~s~nv~I~n~~i~~~dD~i~i~ 221 (343)
.....+++..++++|+|.... .+- -...+...+.+|+|.+.++ -+.... .+-.+++|+|...=|-|.
T Consensus 265 ~~v~~~~F~a~nitf~Ntag~~~~QAvAl~v~~D~~~fy~c~~~G~QD-----TLy~~~-~rqyy~~C~I~G~vDFIF-- 336 (497)
T PLN02698 265 FTITGDGFIARDIGFKNAAGPKGEQAIALSITSDHSVLYRCSIAGYQD-----TLYAAA-LRQFYRECDIYGTIDFIF-- 336 (497)
T ss_pred EEEECCCeEEEeeEEEECCCCCCCceEEEEecCCcEEEEcceeecccc-----hheeCC-CcEEEEeeEEEeccceEe--
Confidence 334578999999999987442 222 2357889999999997543 343333 456889999987666553
Q ss_pred CCceeEEEEeeEEcCC------ceEEEeecccCcCcccccCcEEEEEEEceEEeCCceEEEE----EeecCCCCceEEeE
Q 047322 222 PGTKNLWIERIACGPG------HGIRMKKALAALGPMLLKMVLKNVTVTDSIFTGTQNGVRI----KTWARPSNGFARNI 291 (343)
Q Consensus 222 ~~~~ni~i~n~~~~~~------~gi~i~~~~gs~g~~~~~~~~~ni~i~n~~~~~~~~gi~i----~~~~~~~~g~i~nI 291 (343)
|.-...++||.+..- .+ .| ...|... ...-..+.|.||++.....-... +.+=|-+=..-+.+
T Consensus 337 -G~a~avf~~C~i~~~~~~~~~~~-~i----TAq~r~~-~~~~~G~vf~~c~i~~~~~~~~~~~~~~~yLGRPW~~ysr~ 409 (497)
T PLN02698 337 -GNAAAVFQNCYLFLRRPHGKSYN-VI----LANGRSD-PGQNTGFSLQSCRIRTSSDFSPVKHSYSSYLGRPWKKYSRA 409 (497)
T ss_pred -cccceeecccEEEEecCCCCCce-EE----EecCCCC-CCCCceEEEEeeEEecCCcccccccccceeccCCCCCCceE
Confidence 345678999988521 12 12 1122211 22346799999999875321111 11111011234678
Q ss_pred EEEeEEEecCCeeE
Q 047322 292 RFRNIIMTKVFNPI 305 (343)
Q Consensus 292 ~~~ni~~~~~~~~i 305 (343)
.|.+..|.+.=.|.
T Consensus 410 vf~~s~l~~~I~p~ 423 (497)
T PLN02698 410 IVMESYIDDAIAER 423 (497)
T ss_pred EEEecccCCcccCc
Confidence 88888887654443
No 84
>PF08480 Disaggr_assoc: Disaggregatase related; InterPro: IPR013687 The members of this family are disaggregatases and several hypothetical proteins of the archaeal genus Methanosarcina. Disaggregatases cause aggregates to separate into single cells [] and contain parallel beta-helix repeats. Also see IPR010671 from INTERPRO.
Probab=90.61 E-value=4.7 Score=34.14 Aligned_cols=62 Identities=16% Similarity=0.036 Sum_probs=33.5
Q ss_pred CcEEEEeeEEecCCccEEEEece---------ecEEEEeEEEECCCCCC---CCCeeeeeCcccEEEEccEEec
Q 047322 152 SNIVVSGLTSINSRFFHIAIDEC---------VNIMLRKLKINAPSWSP---NTDGIHIQSSSGITISNSAIMT 213 (343)
Q Consensus 152 ~nv~i~~v~i~n~~~~~i~~~~~---------~~v~i~~~~i~~~~~~~---~~DGi~~~~s~nv~I~n~~i~~ 213 (343)
+|+.|-+-.|.+...+||.+... ++|.|++..|...+..+ ...||-..+-.|.+|+|++|..
T Consensus 2 ~dIEIYnN~I~~T~g~GIWl~gy~~~ysk~~a~nVhIhhN~fY~tGtn~~~~wvGGIv~sGF~ntlIENNVfDG 75 (198)
T PF08480_consen 2 DDIEIYNNTIYNTYGPGIWLFGYDGSYSKDSAKNVHIHHNIFYDTGTNPNIDWVGGIVTSGFYNTLIENNVFDG 75 (198)
T ss_pred CceEEecceeecccCceEEEEecCCCCCccccccEEEECcEeecCCcCCCCceeeeEEeccccccEEEeeeecc
Confidence 46667777777766666665443 35666666666533222 2234444444455555555543
No 85
>PLN02217 probable pectinesterase/pectinesterase inhibitor
Probab=90.10 E-value=4.9 Score=41.25 Aligned_cols=114 Identities=5% Similarity=0.018 Sum_probs=75.8
Q ss_pred eceecEEEEeEEEECCCCCCCCCeeeee-CcccEEEEccEEecCCceEEeCCCceeEEEEeeEEcCCceEEEeecccCcC
Q 047322 172 DECVNIMLRKLKINAPSWSPNTDGIHIQ-SSSGITISNSAIMTGDDCISVGPGTKNLWIERIACGPGHGIRMKKALAALG 250 (343)
Q Consensus 172 ~~~~~v~i~~~~i~~~~~~~~~DGi~~~-~s~nv~I~n~~i~~~dD~i~i~~~~~ni~i~n~~~~~~~gi~i~~~~gs~g 250 (343)
...+++..+|+.|++...........+. ...+..+.+|.|....|-+...+ ..-.+++|++.+.-.+-+ |.
T Consensus 334 v~g~~F~a~nitf~Ntag~~~~QAVAlrv~~Dra~fy~C~f~G~QDTLy~~~--~Rqyy~~C~I~GtVDFIF----G~-- 405 (670)
T PLN02217 334 IVGDHFIAKNIGFENTAGAIKHQAVAIRVLSDESIFYNCKFDGYQDTLYAHS--HRQFYRDCTISGTIDFLF----GD-- 405 (670)
T ss_pred EECCCeEEEeeEEEeCCCCCCCceEEEEecCCcEEEEcceeeeccchhccCC--CcEEEEeCEEEEeccEEe----cC--
Confidence 3467888999999986432233444443 45889999999999888887765 356899999987766655 33
Q ss_pred cccccCcEEEEEEEceEEeCCc----eEEEEEeecCCCCceEEeEEEEeEEEecC
Q 047322 251 PMLLKMVLKNVTVTDSIFTGTQ----NGVRIKTWARPSNGFARNIRFRNIIMTKV 301 (343)
Q Consensus 251 ~~~~~~~~~ni~i~n~~~~~~~----~gi~i~~~~~~~~g~i~nI~~~ni~~~~~ 301 (343)
....|+||++.-.. ..-.|..........-..+.|.|+++...
T Consensus 406 --------a~avfq~C~I~~r~~~~~~~~~ITAqgr~~~~~~tGfvf~~C~i~~~ 452 (670)
T PLN02217 406 --------AAAVFQNCTLLVRKPLLNQACPITAHGRKDPRESTGFVLQGCTIVGE 452 (670)
T ss_pred --------ceEEEEccEEEEccCCCCCceeEecCCCCCCCCCceEEEEeeEEecC
Confidence 46788999887421 11233322111123345788999999875
No 86
>PLN02468 putative pectinesterase/pectinesterase inhibitor
Probab=89.95 E-value=5.4 Score=40.25 Aligned_cols=114 Identities=8% Similarity=0.023 Sum_probs=75.6
Q ss_pred eceecEEEEeEEEECCCCCCCCCeeeee-CcccEEEEccEEecCCceEEeCCCceeEEEEeeEEcCCceEEEeecccCcC
Q 047322 172 DECVNIMLRKLKINAPSWSPNTDGIHIQ-SSSGITISNSAIMTGDDCISVGPGTKNLWIERIACGPGHGIRMKKALAALG 250 (343)
Q Consensus 172 ~~~~~v~i~~~~i~~~~~~~~~DGi~~~-~s~nv~I~n~~i~~~dD~i~i~~~~~ni~i~n~~~~~~~gi~i~~~~gs~g 250 (343)
...+++..+|+.|++...........+. .+.+..+.+|.|....|-+...+ ..-.+++|++.+.-.+-+ |.
T Consensus 342 v~~~~f~a~~itf~Ntag~~~~QAVAl~v~~D~~~fy~c~~~G~QDTLy~~~--~rq~y~~C~I~GtvDFIF----G~-- 413 (565)
T PLN02468 342 VFGKGFMARDMGFRNTAGPIKHQAVALMSSADLSVFYRCTMDAFQDTLYAHA--QRQFYRECNIYGTVDFIF----GN-- 413 (565)
T ss_pred EECCCeEEEEEEEEeCCCCCCCceEEEEEcCCcEEEEEeEEEeccchhccCC--CceEEEeeEEecccceee----cc--
Confidence 3457899999999985432233344443 45789999999999888887775 355799999998777666 43
Q ss_pred cccccCcEEEEEEEceEEeCCce----EEEEEeecCCCCceEEeEEEEeEEEecC
Q 047322 251 PMLLKMVLKNVTVTDSIFTGTQN----GVRIKTWARPSNGFARNIRFRNIIMTKV 301 (343)
Q Consensus 251 ~~~~~~~~~ni~i~n~~~~~~~~----gi~i~~~~~~~~g~i~nI~~~ni~~~~~ 301 (343)
....|+||++.-... .-.|..........-..+.|.|+++...
T Consensus 414 --------a~avfq~c~i~~~~~~~~~~~~iTA~~r~~~~~~~G~vf~~c~i~~~ 460 (565)
T PLN02468 414 --------SAVVFQNCNILPRRPMKGQQNTITAQGRTDPNQNTGISIQNCTILPL 460 (565)
T ss_pred --------ceEEEeccEEEEecCCCCCCceEEecCCCCCCCCceEEEEccEEecC
Confidence 478899998864210 1123322111223445788999999864
No 87
>PF08480 Disaggr_assoc: Disaggregatase related; InterPro: IPR013687 The members of this family are disaggregatases and several hypothetical proteins of the archaeal genus Methanosarcina. Disaggregatases cause aggregates to separate into single cells [] and contain parallel beta-helix repeats. Also see IPR010671 from INTERPRO.
Probab=89.32 E-value=3.6 Score=34.80 Aligned_cols=93 Identities=17% Similarity=0.197 Sum_probs=50.4
Q ss_pred ccEEEEccEEecC-CceEEeC--------CCceeEEEEeeEEcCC---ceEEEeecccCcCcccccCcEEEEEEEceEEe
Q 047322 202 SGITISNSAIMTG-DDCISVG--------PGTKNLWIERIACGPG---HGIRMKKALAALGPMLLKMVLKNVTVTDSIFT 269 (343)
Q Consensus 202 ~nv~I~n~~i~~~-dD~i~i~--------~~~~ni~i~n~~~~~~---~gi~i~~~~gs~g~~~~~~~~~ni~i~n~~~~ 269 (343)
.+|.|.|+.+... --+|.+- +..+||+|.++.|+.. ..+....|+ ......|-.|||++|.
T Consensus 2 ~dIEIYnN~I~~T~g~GIWl~gy~~~ysk~~a~nVhIhhN~fY~tGtn~~~~wvGGI-------v~sGF~ntlIENNVfD 74 (198)
T PF08480_consen 2 DDIEIYNNTIYNTYGPGIWLFGYDGSYSKDSAKNVHIHHNIFYDTGTNPNIDWVGGI-------VTSGFYNTLIENNVFD 74 (198)
T ss_pred CceEEecceeecccCceEEEEecCCCCCccccccEEEECcEeecCCcCCCCceeeeE-------EeccccccEEEeeeec
Confidence 3677888887652 2233332 2246899999998753 123221111 1235678899999988
Q ss_pred CCceEEEEEeecC---CCCceEEeEEEEeEEEecC
Q 047322 270 GTQNGVRIKTWAR---PSNGFARNIRFRNIIMTKV 301 (343)
Q Consensus 270 ~~~~gi~i~~~~~---~~~g~i~nI~~~ni~~~~~ 301 (343)
+...+..+...+. ++.|.---.+++|..+.+.
T Consensus 75 G~y~aai~~~y~~~~~sp~gsgyttivRNNII~NT 109 (198)
T PF08480_consen 75 GVYHAAIAQMYPDYDLSPKGSGYTTIVRNNIIVNT 109 (198)
T ss_pred ccccceEEEEecccccCCCCCceEEEEEcceEeee
Confidence 8755433332211 1223223356666666654
No 88
>PF14592 Chondroitinas_B: Chondroitinase B; PDB: 1OFM_A 1OFL_A 1DBO_A 1DBG_A.
Probab=89.28 E-value=3.2 Score=40.05 Aligned_cols=141 Identities=11% Similarity=0.029 Sum_probs=51.5
Q ss_pred cEEEEeeEEecCCcc-EEEEeceecEEEEeEEEECCCCCCCCCeeeeeCcccEEEEccEEec-C----CceEEeCCCcee
Q 047322 153 NIVVSGLTSINSRFF-HIAIDECVNIMLRKLKINAPSWSPNTDGIHIQSSSGITISNSAIMT-G----DDCISVGPGTKN 226 (343)
Q Consensus 153 nv~i~~v~i~n~~~~-~i~~~~~~~v~i~~~~i~~~~~~~~~DGi~~~~s~nv~I~n~~i~~-~----dD~i~i~~~~~n 226 (343)
+.+|++--+.++..- -+--..|..-++++.+|.... -++.+-...+-+|++++|.. + .-||.+.. ++
T Consensus 200 ~t~Ve~NlFe~cdGE~EIISvKS~~N~ir~Ntf~es~-----G~ltlRHGn~n~V~gN~FiGng~~~~tGGIRIi~--~~ 272 (425)
T PF14592_consen 200 NTTVENNLFERCDGEVEIISVKSSDNTIRNNTFRESQ-----GSLTLRHGNRNTVEGNVFIGNGVKEGTGGIRIIG--EG 272 (425)
T ss_dssp --EEES-EEEEE-SSSEEEEEESBT-EEES-EEES-S-----SEEEEEE-SS-EEES-EEEE-SSSS-B--EEE-S--BS
T ss_pred ceeeecchhhhcCCceeEEEeecCCceEeccEEEecc-----ceEEEecCCCceEeccEEecCCCcCCCCceEEec--CC
Confidence 444444444443221 122223334455555555422 13555444555565555443 2 12455542 34
Q ss_pred EEEEeeEEcCC------ceEEEeecc-cCcCcccccCcEEEEEEEceEEeCCceEEEEEeecC-----------CCCceE
Q 047322 227 LWIERIACGPG------HGIRMKKAL-AALGPMLLKMVLKNVTVTDSIFTGTQNGVRIKTWAR-----------PSNGFA 288 (343)
Q Consensus 227 i~i~n~~~~~~------~gi~i~~~~-gs~g~~~~~~~~~ni~i~n~~~~~~~~gi~i~~~~~-----------~~~g~i 288 (343)
=+|.|++|++- .++.+..|+ ++.. ..-..+.|+.|.++++.++..+|.+..... -+...-
T Consensus 273 H~I~nNY~~gl~g~~~~~~~~v~ng~p~s~l--n~y~qv~nv~I~~NT~In~~~~i~~g~g~~~~~~~~~~~~~i~s~~p 350 (425)
T PF14592_consen 273 HTIYNNYFEGLTGTRFRGALAVMNGVPNSPL--NRYDQVKNVLIANNTFINCKSPIHFGAGSDEERKDVLPASNIRSARP 350 (425)
T ss_dssp -EEES-EEEESSB-TTTTSEE-EEE--BSTT--STT---BSEEEES-EEES-SEEEESST-THHHHHHHHHHCT---B--
T ss_pred cEEEcceeeccccceeecceeeccCCCCCCc--ccccccceeEEecceEEccCCceEEccccccccccccccccccccCC
Confidence 45666666532 123322221 1110 012347778888888888776776654110 012234
Q ss_pred EeEEEEeEEEecCC
Q 047322 289 RNIRFRNIIMTKVF 302 (343)
Q Consensus 289 ~nI~~~ni~~~~~~ 302 (343)
.++++.|..+-+.+
T Consensus 351 ~~~~~~nN~i~~~~ 364 (425)
T PF14592_consen 351 INSTFANNIIYNDD 364 (425)
T ss_dssp -SEEEES-EEE--S
T ss_pred ceEEeeCCeEEcCC
Confidence 56666666665543
No 89
>PLN02634 probable pectinesterase
Probab=88.97 E-value=10 Score=35.95 Aligned_cols=112 Identities=8% Similarity=0.059 Sum_probs=73.0
Q ss_pred ceecEEEEeEEEECCCCC-----CCCCeeeee-CcccEEEEccEEecCCceEEeCCCceeEEEEeeEEcCCceEEEeecc
Q 047322 173 ECVNIMLRKLKINAPSWS-----PNTDGIHIQ-SSSGITISNSAIMTGDDCISVGPGTKNLWIERIACGPGHGIRMKKAL 246 (343)
Q Consensus 173 ~~~~v~i~~~~i~~~~~~-----~~~DGi~~~-~s~nv~I~n~~i~~~dD~i~i~~~~~ni~i~n~~~~~~~gi~i~~~~ 246 (343)
..+++..+|++|++.... .......+. ...+..+.+|.+....|.+.... ..-.++||++.+.-.+-+
T Consensus 147 ~a~~F~a~niTf~Nta~~~~~g~~~~QAVAl~v~gDra~f~~C~f~G~QDTL~~~~--gR~yf~~CyIeG~VDFIF---- 220 (359)
T PLN02634 147 YANYFTARNISFKNTAPAPMPGMQGWQAVAFRISGDKAFFFGCGFYGAQDTLCDDA--GRHYFKECYIEGSIDFIF---- 220 (359)
T ss_pred ECCCeEEEeCeEEeCCccCCCCCCCCceEEEEecCCcEEEEEeEEecccceeeeCC--CCEEEEeeEEcccccEEc----
Confidence 456788888888875311 122333332 35789999999999889887654 467999999998777666
Q ss_pred cCcCcccccCcEEEEEEEceEEeCCce--EEEEEeecCCCCceEEeEEEEeEEEecC
Q 047322 247 AALGPMLLKMVLKNVTVTDSIFTGTQN--GVRIKTWARPSNGFARNIRFRNIIMTKV 301 (343)
Q Consensus 247 gs~g~~~~~~~~~ni~i~n~~~~~~~~--gi~i~~~~~~~~g~i~nI~~~ni~~~~~ 301 (343)
|. ....|+||++..... | .|..........-....|.|+++...
T Consensus 221 G~----------g~a~Fe~C~I~s~~~~~g-~ITA~~R~~~~~~~GfvF~~C~vtg~ 266 (359)
T PLN02634 221 GN----------GRSMYKDCELHSIASRFG-SIAAHGRTCPEEKTGFAFVGCRVTGT 266 (359)
T ss_pred CC----------ceEEEeccEEEEecCCCc-EEEeCCCCCCCCCcEEEEEcCEEcCC
Confidence 43 356789998875422 3 33322111122335677999999764
No 90
>PF07602 DUF1565: Protein of unknown function (DUF1565); InterPro: IPR011459 These proteins share a region of homology in their N termini, and are found in several phylogenetically diverse bacteria and in the archaeon Methanosarcina acetivorans. Some of these proteins also contain characterised domains such as IPR001119 from INTERPRO (e.g. Q8YWJ6 from SWISSPROT) and IPR005084 from INTERPRO (e.g. Q9FBS2 from SWISSPROT).
Probab=88.68 E-value=8.8 Score=34.38 Aligned_cols=129 Identities=15% Similarity=0.137 Sum_probs=69.5
Q ss_pred EEEeceecEEEEeEEEECCCCCCCCCeeeeeCcccEEEEccEEecCCceEEeCCCceeEEEEeeEEcCC--ceEEEeecc
Q 047322 169 IAIDECVNIMLRKLKINAPSWSPNTDGIHIQSSSGITISNSAIMTGDDCISVGPGTKNLWIERIACGPG--HGIRMKKAL 246 (343)
Q Consensus 169 i~~~~~~~v~i~~~~i~~~~~~~~~DGi~~~~s~nv~I~n~~i~~~dD~i~i~~~~~ni~i~n~~~~~~--~gi~i~~~~ 246 (343)
+.+....+.+|++++|.++.. ...-|+++.++ +.+|+||+|.+. +|+.+.
T Consensus 91 ~tI~~~~~~~i~GvtItN~n~-~~g~Gi~Iess------------------------~~tI~Nntf~~~~~~GI~v~--- 142 (246)
T PF07602_consen 91 VTIILANNATISGVTITNPNI-ARGTGIWIESS------------------------SPTIANNTFTNNGREGIFVT--- 142 (246)
T ss_pred EEEEecCCCEEEEEEEEcCCC-CcceEEEEecC------------------------CcEEEeeEEECCccccEEEE---
Confidence 444455667788888887521 12234444332 445555555442 355541
Q ss_pred cCcCcccccCcEEEEEEEceEEeCCceEEEEEeecCCCCceEEeEEEEeEEEecCCeeEEEEee---eCCCCCCCCCCCc
Q 047322 247 AALGPMLLKMVLKNVTVTDSIFTGTQNGVRIKTWARPSNGFARNIRFRNIIMTKVFNPIIIDQN---YCPDNHCPHQTSG 323 (343)
Q Consensus 247 gs~g~~~~~~~~~ni~i~n~~~~~~~~gi~i~~~~~~~~g~i~nI~~~ni~~~~~~~~i~i~~~---~~~~~~~~~~~~~ 323 (343)
++. ....+.++.|+++.+.....|+.+..... + +.+ +++|..+++-..+|.+... .+..+. ..+.+
T Consensus 143 g~~----~~~~i~~~vI~GN~~~~~~~Gi~i~~~~~---~-~~n-~I~NN~I~~N~~Gi~~~~~~pDlG~~s~--~~~g~ 211 (246)
T PF07602_consen 143 GTS----ANPGINGNVISGNSIYFNKTGISISDNAA---P-VEN-KIENNIIENNNIGIVAIGDAPDLGTGSE--GSPGN 211 (246)
T ss_pred eee----cCCcccceEeecceEEecCcCeEEEcccC---C-ccc-eeeccEEEeCCcCeEeeccCCccccCCC--CCCCC
Confidence 110 03467888999999999888998875422 2 222 3466666655557654321 221111 11223
Q ss_pred eEEEeEEEEeEEE
Q 047322 324 VTISGVTYRNIKG 336 (343)
Q Consensus 324 ~~i~~I~~~ni~~ 336 (343)
-.|++-..-||+-
T Consensus 212 N~~~~N~~~Dl~~ 224 (246)
T PF07602_consen 212 NIFRNNGRYDLNN 224 (246)
T ss_pred cEEecCcceeeEe
Confidence 4577666666665
No 91
>PLN02197 pectinesterase
Probab=88.26 E-value=12 Score=38.04 Aligned_cols=115 Identities=11% Similarity=0.113 Sum_probs=75.4
Q ss_pred EeceecEEEEeEEEECCCCCCCCCeeeee-CcccEEEEccEEecCCceEEeCCCceeEEEEeeEEcCCceEEEeecccCc
Q 047322 171 IDECVNIMLRKLKINAPSWSPNTDGIHIQ-SSSGITISNSAIMTGDDCISVGPGTKNLWIERIACGPGHGIRMKKALAAL 249 (343)
Q Consensus 171 ~~~~~~v~i~~~~i~~~~~~~~~DGi~~~-~s~nv~I~n~~i~~~dD~i~i~~~~~ni~i~n~~~~~~~gi~i~~~~gs~ 249 (343)
....+++..+|++|++...........+. .+.+..+.+|.|....|-+...++ .-.+++|++.+.-.+-+ |.
T Consensus 360 ~v~~~~F~a~nitf~Ntag~~~~QAVAlrv~~D~~~fy~C~f~GyQDTLy~~~~--Rqyy~~C~I~GtVDFIF----G~- 432 (588)
T PLN02197 360 QVESEGFMAKWIGFKNTAGPMGHQAVAIRVNGDRAVIFNCRFDGYQDTLYVNNG--RQFYRNIVVSGTVDFIF----GK- 432 (588)
T ss_pred EEECCcEEEEEeEEEeCCCCCCCceEEEEecCCcEEEEEeEEEecCcceEecCC--CEEEEeeEEEecccccc----cc-
Confidence 34567889999999985432233444443 358899999999999999887753 55899999988766655 33
Q ss_pred CcccccCcEEEEEEEceEEeCCc--eE--EEEEeecCCC-CceEEeEEEEeEEEecC
Q 047322 250 GPMLLKMVLKNVTVTDSIFTGTQ--NG--VRIKTWARPS-NGFARNIRFRNIIMTKV 301 (343)
Q Consensus 250 g~~~~~~~~~ni~i~n~~~~~~~--~g--i~i~~~~~~~-~g~i~nI~~~ni~~~~~ 301 (343)
....|+||++.-.. .| -.|....... ...-..+.|.|+++...
T Consensus 433 ---------a~avfq~C~i~~r~~~~~~~~~iTAqgr~~~~~~~tG~vf~~C~it~~ 480 (588)
T PLN02197 433 ---------SATVIQNSLIVVRKGSKGQYNTVTADGNEKGLAMKIGIVLQNCRIVPD 480 (588)
T ss_pred ---------eeeeeecCEEEEecCCCCCceeEECCCCCCCCCCCcEEEEEccEEecC
Confidence 34788999876321 11 1232211111 23345788999999764
No 92
>PRK10531 acyl-CoA thioesterase; Provisional
Probab=88.20 E-value=14 Score=35.84 Aligned_cols=118 Identities=11% Similarity=0.059 Sum_probs=76.7
Q ss_pred EEeceecEEEEeEEEECCCC----CCCCCeeeee-CcccEEEEccEEecCCceEEeCCC----------ceeEEEEeeEE
Q 047322 170 AIDECVNIMLRKLKINAPSW----SPNTDGIHIQ-SSSGITISNSAIMTGDDCISVGPG----------TKNLWIERIAC 234 (343)
Q Consensus 170 ~~~~~~~v~i~~~~i~~~~~----~~~~DGi~~~-~s~nv~I~n~~i~~~dD~i~i~~~----------~~ni~i~n~~~ 234 (343)
.....+++..+|++|++... ........+. ....+.+.+|.|....|-+..... ...-.+++|++
T Consensus 201 v~v~ad~F~a~NLTf~Ntag~~~~~~~~QAVALrv~GDra~fy~C~flG~QDTLy~~~~~~~~~~~~~~~gRqYf~~CyI 280 (422)
T PRK10531 201 FWSQNNGLQLQNLTIENTLGDSVDAGNHPAVALRTDGDKVQIENVNILGRQDTFFVTNSGVQNRLETDRQPRTYVKNSYI 280 (422)
T ss_pred EEEECCCEEEEeeEEEeCCCCCCCCCcceeEEEEEcCCcEEEEeeEEecccceeeeccccccccccccccccEEEEeCEE
Confidence 34567889999999998532 1112233332 358999999999998888877321 23689999999
Q ss_pred cCCceEEEeecccCcCcccccCcEEEEEEEceEEeCCce----EEEEEeecCCCCceEEeEEEEeEEEecCC
Q 047322 235 GPGHGIRMKKALAALGPMLLKMVLKNVTVTDSIFTGTQN----GVRIKTWARPSNGFARNIRFRNIIMTKVF 302 (343)
Q Consensus 235 ~~~~gi~i~~~~gs~g~~~~~~~~~ni~i~n~~~~~~~~----gi~i~~~~~~~~g~i~nI~~~ni~~~~~~ 302 (343)
.+.-.+-+ |. ....|+||++..... .-.|..... ....-....|.|++++...
T Consensus 281 eG~VDFIF----G~----------g~AvFenC~I~s~~~~~~~~g~ITA~~t-~~~~~~GfvF~nCrit~~g 337 (422)
T PRK10531 281 EGDVDFVF----GR----------GAVVFDNTEFRVVNSRTQQEAYVFAPAT-LPNIYYGFLAINSRFNASG 337 (422)
T ss_pred eecccEEc----cC----------ceEEEEcCEEEEecCCCCCceEEEecCC-CCCCCCEEEEECCEEecCC
Confidence 98777666 43 367889998876321 123322111 1223356779999998743
No 93
>PRK10123 wcaM putative colanic acid biosynthesis protein; Provisional
Probab=79.03 E-value=11 Score=34.35 Aligned_cols=80 Identities=20% Similarity=0.367 Sum_probs=39.1
Q ss_pred eeeeeCcccEEEEccEEec---------C-Cc-eEEeCCCceeEEEEeeEEcCCceEEEeecccCc-CcccccCcEEEEE
Q 047322 195 GIHIQSSSGITISNSAIMT---------G-DD-CISVGPGTKNLWIERIACGPGHGIRMKKALAAL-GPMLLKMVLKNVT 262 (343)
Q Consensus 195 Gi~~~~s~nv~I~n~~i~~---------~-dD-~i~i~~~~~ni~i~n~~~~~~~gi~i~~~~gs~-g~~~~~~~~~ni~ 262 (343)
=+|+.+.++..|+|++-.+ | |. .+++. +|.|..|.|..+.++.|+-| |.|-. |.+ -.-.+|..
T Consensus 261 lvhvengkhfvirnvkaknitpdfskkagidnatvaiy-gcdnfvidni~mvnsagmli--gygvikg~y--lsipqnfk 335 (464)
T PRK10123 261 LIHVENGKHFVIRNIKAKNITPDFSKKAGIDNATVAIY-GCDNFVIDNIEMINSAGMLI--GYGVIKGKY--LSIPQNFK 335 (464)
T ss_pred eEEecCCcEEEEEeeeccccCCCchhhcCCCcceEEEE-cccceEEeccccccccccEE--EeeeeeccE--ecccccce
Confidence 3555555666666665433 1 11 23443 36677777776666666555 10111 111 11235555
Q ss_pred EEceEEeCC-----ceEEEEEe
Q 047322 263 VTDSIFTGT-----QNGVRIKT 279 (343)
Q Consensus 263 i~n~~~~~~-----~~gi~i~~ 279 (343)
..|+.+.+. -+|+.|.+
T Consensus 336 ln~i~ldn~~l~yklrgiqiss 357 (464)
T PRK10123 336 LNNIQLDNTHLAYKLRGIQISA 357 (464)
T ss_pred eceEeecccccceeeeeeEecc
Confidence 555555553 24666654
No 94
>PLN02773 pectinesterase
Probab=78.37 E-value=30 Score=32.28 Aligned_cols=113 Identities=9% Similarity=0.087 Sum_probs=64.7
Q ss_pred eceecEEEEeEEEECCCCCCCCCeeeee-CcccEEEEccEEecCCceEEeCCCceeEEEEeeEEcCCceEEEeecccCcC
Q 047322 172 DECVNIMLRKLKINAPSWSPNTDGIHIQ-SSSGITISNSAIMTGDDCISVGPGTKNLWIERIACGPGHGIRMKKALAALG 250 (343)
Q Consensus 172 ~~~~~v~i~~~~i~~~~~~~~~DGi~~~-~s~nv~I~n~~i~~~dD~i~i~~~~~ni~i~n~~~~~~~gi~i~~~~gs~g 250 (343)
..++++.++|++|++...........+. ...++.+.+|.+....|.+.... ..-.++||++.+.-.+-+ |.
T Consensus 99 v~a~~f~a~nlT~~Nt~~~~~gQAvAl~v~gDr~~f~~c~~~G~QDTL~~~~--gr~yf~~c~IeG~VDFIF----G~-- 170 (317)
T PLN02773 99 VEGEDFIAENITFENSAPEGSGQAVAIRVTADRCAFYNCRFLGWQDTLYLHY--GKQYLRDCYIEGSVDFIF----GN-- 170 (317)
T ss_pred EECCCeEEEeeEEEeCCCCCCCcEEEEEecCccEEEEccEeecccceeEeCC--CCEEEEeeEEeecccEEe----ec--
Confidence 3466777788888774321112223222 34678888888887777777653 356778888877666555 43
Q ss_pred cccccCcEEEEEEEceEEeCCceEEEEEeecCCCCceEEeEEEEeEEEecC
Q 047322 251 PMLLKMVLKNVTVTDSIFTGTQNGVRIKTWARPSNGFARNIRFRNIIMTKV 301 (343)
Q Consensus 251 ~~~~~~~~~ni~i~n~~~~~~~~gi~i~~~~~~~~g~i~nI~~~ni~~~~~ 301 (343)
....|++|++.....| .|..........-....|.|+++...
T Consensus 171 --------g~a~Fe~c~i~s~~~g-~ITA~~r~~~~~~~GfvF~~c~it~~ 212 (317)
T PLN02773 171 --------STALLEHCHIHCKSAG-FITAQSRKSSQESTGYVFLRCVITGN 212 (317)
T ss_pred --------cEEEEEeeEEEEccCc-EEECCCCCCCCCCceEEEEccEEecC
Confidence 3467777777654444 33222110111123456777777664
No 95
>smart00722 CASH Domain present in carbohydrate binding proteins and sugar hydrolses.
Probab=76.47 E-value=35 Score=26.79 Aligned_cols=68 Identities=18% Similarity=0.123 Sum_probs=47.4
Q ss_pred EecCcEEEEeeEEecCC---ccEEEEeceecEEEEeEEEECCCCCCCCCeeeeeCcccEEEEc-cEEecCCceEE
Q 047322 149 VGASNIVVSGLTSINSR---FFHIAIDECVNIMLRKLKINAPSWSPNTDGIHIQSSSGITISN-SAIMTGDDCIS 219 (343)
Q Consensus 149 ~~~~nv~i~~v~i~n~~---~~~i~~~~~~~v~i~~~~i~~~~~~~~~DGi~~~~s~nv~I~n-~~i~~~dD~i~ 219 (343)
..+.+..+.+-.+.+.. .+|+.+..+.+..+.+.++. ... . .+|++++...+..+.+ .......|++.
T Consensus 73 ~~~~~~~i~~N~~~~~~~~~~~Gi~~~~~~~~~~~~N~i~-~~~-~-g~G~~~~~~~~~~~~~~~~~~~~~~Gi~ 144 (146)
T smart00722 73 QNTGKNLIIDNVTINGTEGSGAGIVVTAGSEGLFIGNRII-TNN-D-GDGNYLSDSSGGDLIGNRIYDNGRDGIA 144 (146)
T ss_pred cCccccEEEcceecCCCccceEEEEEECCccceEecCeEE-eec-C-CCCEEEeCCCCcEEEcceeEecCCCcEe
Confidence 56677777777777653 78888888777767777776 211 2 6889988877777777 55555556654
No 96
>PLN02698 Probable pectinesterase/pectinesterase inhibitor
Probab=76.14 E-value=53 Score=32.73 Aligned_cols=82 Identities=6% Similarity=0.016 Sum_probs=46.8
Q ss_pred ceecEEEEeEEEECCCCCCCCCeeeee-CcccEEEEccEEecCCceEEeCCCceeEEEEeeEEcCCceEEEeecccCcCc
Q 047322 173 ECVNIMLRKLKINAPSWSPNTDGIHIQ-SSSGITISNSAIMTGDDCISVGPGTKNLWIERIACGPGHGIRMKKALAALGP 251 (343)
Q Consensus 173 ~~~~v~i~~~~i~~~~~~~~~DGi~~~-~s~nv~I~n~~i~~~dD~i~i~~~~~ni~i~n~~~~~~~gi~i~~~~gs~g~ 251 (343)
..+++..+|+.|++...........+. ...+..+.+|.|....|-+...++ .-.+++|++.+.-.+-+ |.
T Consensus 268 ~~~~F~a~nitf~Ntag~~~~QAvAl~v~~D~~~fy~c~~~G~QDTLy~~~~--rqyy~~C~I~G~vDFIF----G~--- 338 (497)
T PLN02698 268 TGDGFIARDIGFKNAAGPKGEQAIALSITSDHSVLYRCSIAGYQDTLYAAAL--RQFYRECDIYGTIDFIF----GN--- 338 (497)
T ss_pred ECCCeEEEeeEEEECCCCCCCceEEEEecCCcEEEEcceeecccchheeCCC--cEEEEeeEEEeccceEe----cc---
Confidence 446667777777764321122333332 346677777777777776666542 34677777776555544 32
Q ss_pred ccccCcEEEEEEEceEEeC
Q 047322 252 MLLKMVLKNVTVTDSIFTG 270 (343)
Q Consensus 252 ~~~~~~~~ni~i~n~~~~~ 270 (343)
....|+||++..
T Consensus 339 -------a~avf~~C~i~~ 350 (497)
T PLN02698 339 -------AAAVFQNCYLFL 350 (497)
T ss_pred -------cceeecccEEEE
Confidence 245666776653
No 97
>PF02402 Lysis_col: Lysis protein; InterPro: IPR003059 The DNA sequence of the entire colicin E2 operon has been determined []. The operon comprises the colicin activity gene (ceaB), the colicin immunity gene (ceiB) and the lysis gene (celB), which is essential for colicin release from producing cells []. A putative LexA binding site is located upstream from ceaB, and a rho-independent terminator structure is located downstream from celB []. Comparison of the amino acid sequences of colicin E2 and cloacin DF13 reveal extensive similarity. These colicins have different modes of action and recognise different cell surface receptors; the two major regions of heterology at the C terminus, and in the C-terminal end of the central region are thought to correspond to the catalytic and receptor-recognition domains, respectively []. Sequence similarities between colicins E2, A and E1 [] are less striking. The colicin E2 (pyocin) immunity protein does not share similarity with either the colicin E3 or cloacin DF13 [] immunity proteins. By contrast, the lysis proteins of the ColE2, ColE1 and CloDF13 plasmids are almost identical except in the N-terminal regions, which themselves are similar to lipoprotein signal peptides []. Processing of the ColE2 prolysis protein to the mature form is prevented by globomycin, a specific inhibitor of the lipoprotein signal peptidase []. The mature ColE2 lysis protein is located in the cell envelope [].; GO: 0009405 pathogenesis, 0019835 cytolysis, 0019867 outer membrane
Probab=73.88 E-value=1.8 Score=27.25 Aligned_cols=28 Identities=11% Similarity=0.163 Sum_probs=17.2
Q ss_pred CchhhHHHHHHHHHhhhccccCCceEEEeecC
Q 047322 1 MAKLAVSCTLFIFFINTLFQSASAAYNVINFG 32 (343)
Q Consensus 1 m~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~G 32 (343)
|||+++...+++.+.++.+++. +|+|-+
T Consensus 1 MkKi~~~~i~~~~~~L~aCQaN----~iRDvq 28 (46)
T PF02402_consen 1 MKKIIFIGIFLLTMLLAACQAN----YIRDVQ 28 (46)
T ss_pred CcEEEEeHHHHHHHHHHHhhhc----ceecCC
Confidence 8887755555444555556665 777754
No 98
>PF09251 PhageP22-tail: Salmonella phage P22 tail-spike; InterPro: IPR015331 This entry is represented by the Bacteriophage P22, Gp9, tailspike protein (TSP). The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. The TSP C-terminal domain adopts a structure that consists of a single-stranded right-handed beta-helix, which in turn is made of parallel beta-strands and short turns. They are required for recognition of the 0-antigenic repeating units of the cell surface, and for subsequent infection of the bacterial cell by the phage []. ; PDB: 1QA3_A 1QRB_A 2XC1_C 1QA2_A 1TYX_A 2VFQ_A 2VFO_A 1TYU_A 2VFN_A 1QA1_A ....
Probab=71.89 E-value=1e+02 Score=29.93 Aligned_cols=106 Identities=25% Similarity=0.310 Sum_probs=51.7
Q ss_pred cccEEEEccE-EecCCceEEeCCC-----------------------ceeEEEEeeEEcCCceEEEeecccCcCcccccC
Q 047322 201 SSGITISNSA-IMTGDDCISVGPG-----------------------TKNLWIERIACGPGHGIRMKKALAALGPMLLKM 256 (343)
Q Consensus 201 s~nv~I~n~~-i~~~dD~i~i~~~-----------------------~~ni~i~n~~~~~~~gi~i~~~~gs~g~~~~~~ 256 (343)
|-|.+++|+. +..-.|++.+.+. -.|=.|+|...+++.|+.+ +.-| ..+
T Consensus 263 nYnLqF~d~~~i~~~~DG~Dl~aDtg~~~~~dR~~D~~laqYp~~qLPtnHiidNi~~~~~lGVG~----~~DG---~~~ 335 (549)
T PF09251_consen 263 NYNLQFRDSVTISPVWDGFDLGADTGMGPETDRPGDYPLAQYPWHQLPTNHIIDNILVRGSLGVGI----GMDG---KGG 335 (549)
T ss_dssp EBS-EEEEEEEES-SSESEEE-SS-SSSTTS--TTS--TTTS-TT------EEEEEEEES-SSESC----EEEC---CS-
T ss_pred eeeEEEeccceEEEeecceeccCCCCCCCCccCCCCcchhhCchhhCchhhhhhhhheeccceeee----eecC---CCc
Confidence 4566777766 5566777777653 1455666766666666555 4333 244
Q ss_pred cEEEEEEEceEEeCCceEEEEEeecCCCCceEEeEEEEeEEEecCC------eeEEEEeeeCCCCCCCCCCCceEEEeEE
Q 047322 257 VLKNVTVTDSIFTGTQNGVRIKTWARPSNGFARNIRFRNIIMTKVF------NPIIIDQNYCPDNHCPHQTSGVTISGVT 330 (343)
Q Consensus 257 ~~~ni~i~n~~~~~~~~gi~i~~~~~~~~g~i~nI~~~ni~~~~~~------~~i~i~~~~~~~~~~~~~~~~~~i~~I~ 330 (343)
.++||++++|. ..|+.+..+ +=.|.||++-++. +.|.+.. .-.++.|.
T Consensus 336 yvsni~~~d~~----g~G~~~~~~---------~~~ftNitvId~N~~n~~~nQI~i~G-------------~~~vnGir 389 (549)
T PF09251_consen 336 YVSNITVQDCA----GAGIFIRGT---------NKVFTNITVIDTNTDNFNANQIYIEG-------------ACIVNGIR 389 (549)
T ss_dssp EEEEEEEES-S----SESEEEECC---------S-EEEEEEEES-STT-SSSECEEE-S-------------S-EEEEEE
T ss_pred eEeeEEeeccc----CCceEEeec---------CCceeeeEEEeccccCCCCceEEEec-------------ceEEccee
Confidence 66666666654 235666643 2236666665432 3343321 12677777
Q ss_pred EEeEEEEec
Q 047322 331 YRNIKGTSA 339 (343)
Q Consensus 331 ~~ni~~~~~ 339 (343)
+-+|+.+..
T Consensus 390 ~igi~~~~~ 398 (549)
T PF09251_consen 390 LIGIKPTPS 398 (549)
T ss_dssp E-ECC-STS
T ss_pred EeeeeccCC
Confidence 776665443
No 99
>PF09251 PhageP22-tail: Salmonella phage P22 tail-spike; InterPro: IPR015331 This entry is represented by the Bacteriophage P22, Gp9, tailspike protein (TSP). The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. The TSP C-terminal domain adopts a structure that consists of a single-stranded right-handed beta-helix, which in turn is made of parallel beta-strands and short turns. They are required for recognition of the 0-antigenic repeating units of the cell surface, and for subsequent infection of the bacterial cell by the phage []. ; PDB: 1QA3_A 1QRB_A 2XC1_C 1QA2_A 1TYX_A 2VFQ_A 2VFO_A 1TYU_A 2VFN_A 1QA1_A ....
Probab=69.14 E-value=19 Score=34.61 Aligned_cols=71 Identities=15% Similarity=0.171 Sum_probs=29.4
Q ss_pred ceeEEEEeeEEcCC--ceEEEeeccc--CcC---------cccccCcEEEEEEEceEEeCCceEEEEEeecCCCCceEEe
Q 047322 224 TKNLWIERIACGPG--HGIRMKKALA--ALG---------PMLLKMVLKNVTVTDSIFTGTQNGVRIKTWARPSNGFARN 290 (343)
Q Consensus 224 ~~ni~i~n~~~~~~--~gi~i~~~~g--s~g---------~~~~~~~~~ni~i~n~~~~~~~~gi~i~~~~~~~~g~i~n 290 (343)
+.|..+++...-.. +|+-+.++.| +.- ++.-..-..|=.|+|+...++ .|+.+... + .++.++|
T Consensus 263 nYnLqF~d~~~i~~~~DG~Dl~aDtg~~~~~dR~~D~~laqYp~~qLPtnHiidNi~~~~~-lGVG~~~D-G-~~~yvsn 339 (549)
T PF09251_consen 263 NYNLQFRDSVTISPVWDGFDLGADTGMGPETDRPGDYPLAQYPWHQLPTNHIIDNILVRGS-LGVGIGMD-G-KGGYVSN 339 (549)
T ss_dssp EBS-EEEEEEEES-SSESEEE-SS-SSSTTS--TTS--TTTS-TT------EEEEEEEES--SSESCEEE-C-CS-EEEE
T ss_pred eeeEEEeccceEEEeecceeccCCCCCCCCccCCCCcchhhCchhhCchhhhhhhhheecc-ceeeeeec-C-CCceEee
Confidence 77888888764322 3566522211 110 000011134556677766665 34433321 3 5677777
Q ss_pred EEEEeEE
Q 047322 291 IRFRNII 297 (343)
Q Consensus 291 I~~~ni~ 297 (343)
|+.+++.
T Consensus 340 i~~~d~~ 346 (549)
T PF09251_consen 340 ITVQDCA 346 (549)
T ss_dssp EEEES-S
T ss_pred EEeeccc
Confidence 7666654
No 100
>PLN02665 pectinesterase family protein
Probab=64.69 E-value=1.2e+02 Score=28.91 Aligned_cols=122 Identities=11% Similarity=0.062 Sum_probs=78.3
Q ss_pred EEeceecEEEEeEEEECCCCC-----CCCCeeeee-CcccEEEEccEEecCCceEEeCCCceeEEEEeeEEcCCceEEEe
Q 047322 170 AIDECVNIMLRKLKINAPSWS-----PNTDGIHIQ-SSSGITISNSAIMTGDDCISVGPGTKNLWIERIACGPGHGIRMK 243 (343)
Q Consensus 170 ~~~~~~~v~i~~~~i~~~~~~-----~~~DGi~~~-~s~nv~I~n~~i~~~dD~i~i~~~~~ni~i~n~~~~~~~gi~i~ 243 (343)
....++++..+|++|++.... .......+. ......+.+|.+....|-+.... ..-.+++|++.+.-.+-+
T Consensus 149 v~v~a~~F~a~nitf~Nta~~~~~~~~g~QAVAl~v~gDka~f~~C~f~G~QDTL~~~~--gr~yf~~CyIeG~VDFIF- 225 (366)
T PLN02665 149 LIVESDYFMAANIIIKNSAPRPDGKRKGAQAVAMRISGDKAAFYNCRFIGFQDTLCDDK--GRHFFKDCYIEGTVDFIF- 225 (366)
T ss_pred EEEECCCeEEEeeEEEeCCCCcCCCCCCcceEEEEEcCCcEEEEcceeccccceeEeCC--CCEEEEeeEEeeccceec-
Confidence 345678899999999985321 111223332 35889999999999999887654 367899999998777665
Q ss_pred ecccCcCcccccCcEEEEEEEceEEeCCceE--EEEEeecCCCCceEEeEEEEeEEEecCCeeEEE
Q 047322 244 KALAALGPMLLKMVLKNVTVTDSIFTGTQNG--VRIKTWARPSNGFARNIRFRNIIMTKVFNPIII 307 (343)
Q Consensus 244 ~~~gs~g~~~~~~~~~ni~i~n~~~~~~~~g--i~i~~~~~~~~g~i~nI~~~ni~~~~~~~~i~i 307 (343)
|. ....|++|++.....+ -.|..........-....|.|++++.....+++
T Consensus 226 ---G~----------g~a~fe~C~i~s~~~~~~g~ITA~~r~~~~~~~GfvF~~C~itg~~~~~yL 278 (366)
T PLN02665 226 ---GS----------GKSLYLNTELHVVGDGGLRVITAQARNSEAEDSGFSFVHCKVTGTGTGAYL 278 (366)
T ss_pred ---cc----------cceeeEccEEEEecCCCcEEEEcCCCCCCCCCceEEEEeeEEecCCCceee
Confidence 43 3568888888764332 133322111112234567999999875433444
No 101
>PF01095 Pectinesterase: Pectinesterase; InterPro: IPR000070 Pectinesterase 3.1.1.11 from EC (pectin methylesterase) catalyses the de-esterification of pectin into pectate and methanol. Pectin is one of the main components of the plant cell wall. In plants, pectinesterase plays an important role in cell wall metabolism during fruit ripening. In plant bacterial pathogens such as Erwinia carotovora and in fungal pathogens such as Aspergillus niger, pectinesterase is involved in maceration and soft-rotting of plant tissue. Plant pectinesterases are regulated by pectinesterase inhibitors, which are ineffective against microbial enzymes []. Prokaryotic and eukaryotic pectinesterases share a few regions of sequence similarity. The crystal structure of pectinesterase from Erwinia chrysanthemi revealed a beta-helix structure similar to that found in pectinolytic enzymes, though it is different from most structures of esterases []. The putative catalytic residues are in a similar location to those of the active site and substrate-binding cleft of pectate lyase.; GO: 0030599 pectinesterase activity, 0042545 cell wall modification, 0005618 cell wall; PDB: 1QJV_B 1XG2_A 1GQ8_A 2NTQ_A 2NTP_A 2NT9_A 2NT6_B 2NSP_B 2NTB_A 2NST_A ....
Probab=62.51 E-value=66 Score=29.71 Aligned_cols=67 Identities=4% Similarity=0.067 Sum_probs=31.4
Q ss_pred ceecEEEEeEEEECCCCCC--CCCeeeeeCcccEEEEccEEecCCceEEeCCCceeEEEEeeEEcCCceEEE
Q 047322 173 ECVNIMLRKLKINAPSWSP--NTDGIHIQSSSGITISNSAIMTGDDCISVGPGTKNLWIERIACGPGHGIRM 242 (343)
Q Consensus 173 ~~~~v~i~~~~i~~~~~~~--~~DGi~~~~s~nv~I~n~~i~~~dD~i~i~~~~~ni~i~n~~~~~~~gi~i 242 (343)
..+++.++|++|.+..... .+-.+.+ ...++.+.+|.|....|-+.... .+..++||++.+.-.+-.
T Consensus 85 ~a~~f~~~nit~~Nt~g~~~~qAvAl~~-~~d~~~f~~c~~~g~QDTL~~~~--~r~y~~~c~IeG~vDFIf 153 (298)
T PF01095_consen 85 NADDFTAENITFENTAGPSGGQAVALRV-SGDRAAFYNCRFLGYQDTLYANG--GRQYFKNCYIEGNVDFIF 153 (298)
T ss_dssp -STT-EEEEEEEEEHCSGSG----SEEE-T-TSEEEEEEEEE-STT-EEE-S--SEEEEES-EEEESEEEEE
T ss_pred cccceeeeeeEEecCCCCcccceeeeee-cCCcEEEEEeEEccccceeeecc--ceeEEEeeEEEecCcEEE
Confidence 3456666666666532111 1112222 23566667777666666665543 245666676666555544
No 102
>PLN02708 Probable pectinesterase/pectinesterase inhibitor
Probab=62.37 E-value=85 Score=31.75 Aligned_cols=114 Identities=11% Similarity=0.128 Sum_probs=77.6
Q ss_pred eceecEEEEeEEEECCCCCCCCCeeeee-CcccEEEEccEEecCCceEEeCCCceeEEEEeeEEcCCceEEEeecccCcC
Q 047322 172 DECVNIMLRKLKINAPSWSPNTDGIHIQ-SSSGITISNSAIMTGDDCISVGPGTKNLWIERIACGPGHGIRMKKALAALG 250 (343)
Q Consensus 172 ~~~~~v~i~~~~i~~~~~~~~~DGi~~~-~s~nv~I~n~~i~~~dD~i~i~~~~~ni~i~n~~~~~~~gi~i~~~~gs~g 250 (343)
...+++..+|++|++...........+. .+..+.+.+|.|....|-+...++ .-.+++|++.+.-.+-+ |.
T Consensus 327 v~~~~f~a~~it~~Ntag~~~~QAVAlrv~~D~~~f~~c~~~G~QDTLy~~~~--rq~y~~C~I~GtVDFIF----G~-- 398 (553)
T PLN02708 327 VLGDGFMARDLTIQNTAGPDAHQAVAFRSDSDLSVIENCEFLGNQDTLYAHSL--RQFYKSCRIQGNVDFIF----GN-- 398 (553)
T ss_pred EEcCCeEEEeeEEEcCCCCCCCceEEEEecCCcEEEEeeeeeeccccceeCCC--ceEEEeeEEeecCCEEe----cC--
Confidence 4567899999999986432233444443 458899999999999999888753 56899999998877766 43
Q ss_pred cccccCcEEEEEEEceEEeCC------ceE--EEEEeecCCCCceEEeEEEEeEEEecC
Q 047322 251 PMLLKMVLKNVTVTDSIFTGT------QNG--VRIKTWARPSNGFARNIRFRNIIMTKV 301 (343)
Q Consensus 251 ~~~~~~~~~ni~i~n~~~~~~------~~g--i~i~~~~~~~~g~i~nI~~~ni~~~~~ 301 (343)
....|+||++.-. ..| -.|..........-..+.|.|+++...
T Consensus 399 --------a~avfq~c~i~~~~~~~~~~~~~~~~iTA~~r~~~~~~~G~vf~~C~it~~ 449 (553)
T PLN02708 399 --------SAAVFQDCAILIAPRQLKPEKGENNAVTAHGRTDPAQSTGFVFQNCLINGT 449 (553)
T ss_pred --------ceEEEEccEEEEeccccCCCCCCceEEEeCCCCCCCCCceEEEEccEEecC
Confidence 4788999988731 111 133322111223445788999999764
No 103
>smart00710 PbH1 Parallel beta-helix repeats. The tertiary structures of pectate lyases and rhamnogalacturonase A show a stack of parallel beta strands that are coiled into a large helix. Each coil of the helix represents a structural repeat that, in some homologues, can be recognised from sequence information alone. Conservation of asparagines might be connected with asparagine-ladders that contribute to the stability of the fold. Proteins containing these repeats most often are enzymes with polysaccharide substrates.
Probab=57.22 E-value=12 Score=19.65 Aligned_cols=19 Identities=26% Similarity=0.476 Sum_probs=11.7
Q ss_pred EEEEEceEEeCCce-EEEEE
Q 047322 260 NVTVTDSIFTGTQN-GVRIK 278 (343)
Q Consensus 260 ni~i~n~~~~~~~~-gi~i~ 278 (343)
+++|+++++.+... |+.+.
T Consensus 3 ~~~i~~n~i~~~~~~Gi~i~ 22 (26)
T smart00710 3 NVTIENNTIRNNGGDGIYIG 22 (26)
T ss_pred CEEEECCEEEeCCCCcEEEe
Confidence 56666666666554 66554
No 104
>PRK10081 entericidin B membrane lipoprotein; Provisional
Probab=55.83 E-value=15 Score=23.84 Aligned_cols=12 Identities=17% Similarity=-0.119 Sum_probs=5.0
Q ss_pred chHHHHHHHHHH
Q 047322 40 DATQAFLRAWSS 51 (343)
Q Consensus 40 Ddt~Aiq~Ai~~ 51 (343)
.|.++-=+||..
T Consensus 30 ~Di~~~G~ai~~ 41 (48)
T PRK10081 30 EDISDGGNAISG 41 (48)
T ss_pred HhHHHHHHHHHH
Confidence 344444444443
No 105
>PLN02170 probable pectinesterase/pectinesterase inhibitor
Probab=55.73 E-value=1.9e+02 Score=29.04 Aligned_cols=116 Identities=8% Similarity=0.063 Sum_probs=77.6
Q ss_pred EEeceecEEEEeEEEECCCCCCCCCeeeee-CcccEEEEccEEecCCceEEeCCCceeEEEEeeEEcCCceEEEeecccC
Q 047322 170 AIDECVNIMLRKLKINAPSWSPNTDGIHIQ-SSSGITISNSAIMTGDDCISVGPGTKNLWIERIACGPGHGIRMKKALAA 248 (343)
Q Consensus 170 ~~~~~~~v~i~~~~i~~~~~~~~~DGi~~~-~s~nv~I~n~~i~~~dD~i~i~~~~~ni~i~n~~~~~~~gi~i~~~~gs 248 (343)
.....+++..+|+.|++...........+. .+....+.+|.|....|-+...+ ..-.+++|++.+.-.+-+ |.
T Consensus 308 v~v~~~~F~a~nitf~Ntag~~~~QAVALrv~gDr~~fy~C~f~GyQDTLy~~~--~Rqyy~~C~I~GtVDFIF----G~ 381 (529)
T PLN02170 308 VAAMGDGFIARDITFVNSAGPNSEQAVALRVGSDKSVVYRCSVEGYQDSLYTHS--KRQFYRETDITGTVDFIF----GN 381 (529)
T ss_pred EEEEcCCeEEEeeEEEecCCCCCCceEEEEecCCcEEEEeeeEeccCCcceeCC--CCEEEEeeEEccccceec----cc
Confidence 345567889999999986432223344432 35889999999999999988775 356889999998777665 43
Q ss_pred cCcccccCcEEEEEEEceEEeCCce---EEEEEeecCCCCceEEeEEEEeEEEecC
Q 047322 249 LGPMLLKMVLKNVTVTDSIFTGTQN---GVRIKTWARPSNGFARNIRFRNIIMTKV 301 (343)
Q Consensus 249 ~g~~~~~~~~~ni~i~n~~~~~~~~---gi~i~~~~~~~~g~i~nI~~~ni~~~~~ 301 (343)
....|+||++.-... .-.|..........-..+.|.|+++...
T Consensus 382 ----------a~avFq~C~I~~~~~~~~~g~ITAq~R~~~~~~~Gfvf~~C~it~~ 427 (529)
T PLN02170 382 ----------SAVVFQSCNIAARKPSGDRNYVTAQGRSDPNQNTGISIHNCRITAE 427 (529)
T ss_pred ----------ceEEEeccEEEEecCCCCceEEEecCCCCCCCCceEEEEeeEEecC
Confidence 467889998875321 1233322111223345678999999874
No 106
>PF08139 LPAM_1: Prokaryotic membrane lipoprotein lipid attachment site; InterPro: IPR012640 In prokaryotes, membrane lipoproteins are synthesized with a precursor signal peptide, which is cleaved by a specific lipoprotein signal peptidase (signal peptidase II). The peptidase recognises a conserved sequence and cuts upstream of a cysteine residue to which a glyceride-fatty acid lipid is attached [,]. This lipid attachment site is found in homologues of the VirB proteins of type IV secretion systems (T4SS). Conjugal transfer across the cell envelope of Gram-negative bacteria is mediated by a supramolecular structure termed mating pair formation (Mpf) complex. Collectively, secretion pathways ancestrally related to bacterial conjugation systems are now known as T4SS. T4SS are involved in the delivery of effector molecules to eukaryotic target cells; each of these systems exports distinct DNA or protein substrates to effect a myriad of changes in host cell physiology during infection [].
Probab=54.12 E-value=9.6 Score=21.14 Aligned_cols=11 Identities=9% Similarity=0.120 Sum_probs=4.8
Q ss_pred chhhHHHHHHH
Q 047322 2 AKLAVSCTLFI 12 (343)
Q Consensus 2 ~~~~~~~~~~~ 12 (343)
||+++.+++++
T Consensus 8 Kkil~~l~a~~ 18 (25)
T PF08139_consen 8 KKILFPLLALF 18 (25)
T ss_pred HHHHHHHHHHH
Confidence 45444444333
No 107
>PLN02916 pectinesterase family protein
Probab=52.90 E-value=1.5e+02 Score=29.51 Aligned_cols=115 Identities=9% Similarity=-0.013 Sum_probs=77.9
Q ss_pred EeceecEEEEeEEEECCCCCCCCCeeeee-CcccEEEEccEEecCCceEEeCCCceeEEEEeeEEcCCceEEEeecccCc
Q 047322 171 IDECVNIMLRKLKINAPSWSPNTDGIHIQ-SSSGITISNSAIMTGDDCISVGPGTKNLWIERIACGPGHGIRMKKALAAL 249 (343)
Q Consensus 171 ~~~~~~v~i~~~~i~~~~~~~~~DGi~~~-~s~nv~I~n~~i~~~dD~i~i~~~~~ni~i~n~~~~~~~gi~i~~~~gs~ 249 (343)
....+++..+|++|++...........+. .+....+.+|.|....|-+...++ .-.+++|++.+.-.+-+ |.
T Consensus 273 ~v~~~~F~A~nitf~Ntag~~~~QAVALrv~~D~a~fy~C~f~G~QDTLy~~~~--Rqyy~~C~I~GtVDFIF----G~- 345 (502)
T PLN02916 273 GVSGDGFWARDITFENTAGPHKHQAVALRVSSDLSVFYRCSFKGYQDTLFVHSL--RQFYRDCHIYGTIDFIF----GD- 345 (502)
T ss_pred EEECCCEEEEeeEEEeCCCCCCCceEEEEEcCCcEEEEeeeEeccCceeEeCCC--CEEEEecEEecccceec----cC-
Confidence 34567889999999986432333444443 458899999999999999888753 56899999998877666 43
Q ss_pred CcccccCcEEEEEEEceEEeCCc----eEEEEEeecCCCCceEEeEEEEeEEEecC
Q 047322 250 GPMLLKMVLKNVTVTDSIFTGTQ----NGVRIKTWARPSNGFARNIRFRNIIMTKV 301 (343)
Q Consensus 250 g~~~~~~~~~ni~i~n~~~~~~~----~gi~i~~~~~~~~g~i~nI~~~ni~~~~~ 301 (343)
....|+||++.-.. ..-.|..........-..+.|.|+++...
T Consensus 346 ---------a~avFq~C~I~~~~~~~~~~g~ITAq~r~~~~~~tGfvf~~C~it~~ 392 (502)
T PLN02916 346 ---------AAVVFQNCDIFVRRPMDHQGNMITAQGRDDPHENTGISIQHSRVRAS 392 (502)
T ss_pred ---------ceEEEecCEEEEecCCCCCcceEEecCCCCCCCCcEEEEEeeEEecC
Confidence 46788999886431 11234322111223446788999999774
No 108
>PLN02671 pectinesterase
Probab=51.87 E-value=2.2e+02 Score=27.11 Aligned_cols=114 Identities=10% Similarity=0.096 Sum_probs=73.2
Q ss_pred EeceecEEEEeEEEECCCC----CCCCCeeeee-CcccEEEEccEEecCCceEEeCCCceeEEEEeeEEcCCceEEEeec
Q 047322 171 IDECVNIMLRKLKINAPSW----SPNTDGIHIQ-SSSGITISNSAIMTGDDCISVGPGTKNLWIERIACGPGHGIRMKKA 245 (343)
Q Consensus 171 ~~~~~~v~i~~~~i~~~~~----~~~~DGi~~~-~s~nv~I~n~~i~~~dD~i~i~~~~~ni~i~n~~~~~~~gi~i~~~ 245 (343)
....+++..+|++|++... ........+. ...++.+.+|.+....|-+.... ..-.++||++.+.-.+-+
T Consensus 150 ~v~a~~F~a~nitfeNt~~~~~g~~~~QAVALrv~gDra~f~~c~f~G~QDTLy~~~--gR~yf~~CyIeG~VDFIF--- 224 (359)
T PLN02671 150 TIESDYFCATGITFENTVVAEPGGQGMQAVALRISGDKAFFYKVRVLGAQDTLLDET--GSHYFYQCYIQGSVDFIF--- 224 (359)
T ss_pred EEECCceEEEeeEEEcCCCCCCCCCCccEEEEEEcCccEEEEcceEeccccccEeCC--CcEEEEecEEEEeccEEe---
Confidence 3445677888888887521 1122333332 35899999999999888887654 356999999988767666
Q ss_pred ccCcCcccccCcEEEEEEEceEEeCCc--eEEEEEeecCCCCceEEeEEEEeEEEecC
Q 047322 246 LAALGPMLLKMVLKNVTVTDSIFTGTQ--NGVRIKTWARPSNGFARNIRFRNIIMTKV 301 (343)
Q Consensus 246 ~gs~g~~~~~~~~~ni~i~n~~~~~~~--~gi~i~~~~~~~~g~i~nI~~~ni~~~~~ 301 (343)
|. ....|+||++.... .| .|..........-....|.|+++...
T Consensus 225 -G~----------g~A~Fe~C~I~s~~~~~G-~ITA~~r~~~~~~~GfvF~~C~itg~ 270 (359)
T PLN02671 225 -GN----------AKSLYQDCVIQSTAKRSG-AIAAHHRDSPTEDTGFSFVNCVINGT 270 (359)
T ss_pred -cc----------eeEEEeccEEEEecCCCe-EEEeeccCCCCCCccEEEEccEEccC
Confidence 43 36788999887532 23 33322111112235677999999764
No 109
>PLN02745 Putative pectinesterase/pectinesterase inhibitor
Probab=50.31 E-value=1.5e+02 Score=30.26 Aligned_cols=113 Identities=7% Similarity=0.032 Sum_probs=76.7
Q ss_pred eceecEEEEeEEEECCCCCCCCCeeeee-CcccEEEEccEEecCCceEEeCCCceeEEEEeeEEcCCceEEEeecccCcC
Q 047322 172 DECVNIMLRKLKINAPSWSPNTDGIHIQ-SSSGITISNSAIMTGDDCISVGPGTKNLWIERIACGPGHGIRMKKALAALG 250 (343)
Q Consensus 172 ~~~~~v~i~~~~i~~~~~~~~~DGi~~~-~s~nv~I~n~~i~~~dD~i~i~~~~~ni~i~n~~~~~~~gi~i~~~~gs~g 250 (343)
...+++..+|+.|++...........+. .+.+..+.+|.|....|-+...+ ..-.+++|++.+.-.+-+ |.
T Consensus 369 v~~~~F~a~nitf~Ntag~~~~QAVAl~v~~Dr~~f~~c~~~G~QDTLy~~~--~Rqyy~~C~I~GtVDFIF----G~-- 440 (596)
T PLN02745 369 ALGEGFMAKSMGFRNTAGPEKHQAVAIRVQSDRSIFLNCRFEGYQDTLYAQT--HRQFYRSCVITGTIDFIF----GD-- 440 (596)
T ss_pred EEcCCEEEEeeEEEECCCCCCCceEEEEEcCCcEEEEeeEEeecccccccCC--CcEEEEeeEEEeeccEEe----cc--
Confidence 4668899999999985432223334443 45899999999999999887765 357999999998777665 43
Q ss_pred cccccCcEEEEEEEceEEeCCc-----eEEEEEeecCCCCceEEeEEEEeEEEecC
Q 047322 251 PMLLKMVLKNVTVTDSIFTGTQ-----NGVRIKTWARPSNGFARNIRFRNIIMTKV 301 (343)
Q Consensus 251 ~~~~~~~~~ni~i~n~~~~~~~-----~gi~i~~~~~~~~g~i~nI~~~ni~~~~~ 301 (343)
....|+||++.-.. .+ .|..........-..+.|.|+++...
T Consensus 441 --------a~avf~~C~i~~~~~~~~~~~-~iTAq~r~~~~~~~Gfvf~~c~i~~~ 487 (596)
T PLN02745 441 --------AAAIFQNCLIFVRKPLPNQQN-TVTAQGRVDKFETTGIVLQNCRIAPD 487 (596)
T ss_pred --------eeEEEEecEEEEecCCCCCCc-eEEecCCCCCCCCceEEEEeeEEecC
Confidence 57888999886421 12 33322111223346778999999864
No 110
>PLN02488 probable pectinesterase/pectinesterase inhibitor
Probab=49.35 E-value=2.3e+02 Score=28.31 Aligned_cols=114 Identities=8% Similarity=-0.019 Sum_probs=78.3
Q ss_pred eceecEEEEeEEEECCCCCCCCCeeeee-CcccEEEEccEEecCCceEEeCCCceeEEEEeeEEcCCceEEEeecccCcC
Q 047322 172 DECVNIMLRKLKINAPSWSPNTDGIHIQ-SSSGITISNSAIMTGDDCISVGPGTKNLWIERIACGPGHGIRMKKALAALG 250 (343)
Q Consensus 172 ~~~~~v~i~~~~i~~~~~~~~~DGi~~~-~s~nv~I~n~~i~~~dD~i~i~~~~~ni~i~n~~~~~~~gi~i~~~~gs~g 250 (343)
...+++..+|+.|++...........+. .+....+.+|.|....|-+...+ ..-.+++|++++.-.+-+ |.
T Consensus 281 v~g~gF~A~nitf~Ntag~~~~QAVALrv~~Dra~Fy~C~f~GyQDTLy~~~--~RqyyrdC~I~GtVDFIF----G~-- 352 (509)
T PLN02488 281 SNGDGFIGIDMCFRNTAGPAKGPAVALRVSGDMSVIYRCRIEGYQDALYPHR--DRQFYRECFITGTVDFIC----GN-- 352 (509)
T ss_pred EEcCCeEEEeeEEEECCCCCCCceEEEEecCCcEEEEcceeeccCcceeeCC--CCEEEEeeEEeeccceEe----cc--
Confidence 3467788899999985432233445543 45889999999999999988765 467999999998777666 43
Q ss_pred cccccCcEEEEEEEceEEeCCc-----eEEEEEeecCCCCceEEeEEEEeEEEecCC
Q 047322 251 PMLLKMVLKNVTVTDSIFTGTQ-----NGVRIKTWARPSNGFARNIRFRNIIMTKVF 302 (343)
Q Consensus 251 ~~~~~~~~~ni~i~n~~~~~~~-----~gi~i~~~~~~~~g~i~nI~~~ni~~~~~~ 302 (343)
....|+||++.... .+ .|..........-..+.|.|+++....
T Consensus 353 --------a~avFq~C~I~sr~~~~~~~~-~ITAq~R~~~~~~tGfvf~~C~it~~~ 400 (509)
T PLN02488 353 --------AAAVFQFCQIVARQPMMGQSN-VITAQSRESKDDNSGFSIQKCNITASS 400 (509)
T ss_pred --------eEEEEEccEEEEecCCCCCCE-EEEeCCCCCCCCCcEEEEEeeEEecCC
Confidence 57889999987531 12 343322212233456889999998753
No 111
>PLN02432 putative pectinesterase
Probab=49.28 E-value=2.2e+02 Score=26.31 Aligned_cols=112 Identities=11% Similarity=0.073 Sum_probs=68.2
Q ss_pred eceecEEEEeEEEECCCCCCCCCeeeee-CcccEEEEccEEecCCceEEeCCCceeEEEEeeEEcCCceEEEeecccCcC
Q 047322 172 DECVNIMLRKLKINAPSWSPNTDGIHIQ-SSSGITISNSAIMTGDDCISVGPGTKNLWIERIACGPGHGIRMKKALAALG 250 (343)
Q Consensus 172 ~~~~~v~i~~~~i~~~~~~~~~DGi~~~-~s~nv~I~n~~i~~~dD~i~i~~~~~ni~i~n~~~~~~~gi~i~~~~gs~g 250 (343)
...+++.++|++|++... .....+.+. ...++.+.+|.+....|.+.... ..-.++||++.+.-.+-+ |.
T Consensus 91 v~a~~f~a~nlt~~Nt~g-~~~QAvAl~v~gDr~~f~~c~~~G~QDTLy~~~--gr~yf~~c~I~G~VDFIF----G~-- 161 (293)
T PLN02432 91 VLASDFVGRFLTIQNTFG-SSGKAVALRVAGDRAAFYGCRILSYQDTLLDDT--GRHYYRNCYIEGATDFIC----GN-- 161 (293)
T ss_pred EECCCeEEEeeEEEeCCC-CCCceEEEEEcCCcEEEEcceEecccceeEECC--CCEEEEeCEEEecccEEe----cC--
Confidence 345778888888887432 222333332 34788888888888888877654 356888888887766655 43
Q ss_pred cccccCcEEEEEEEceEEeCC--ceEEEEEeecCCCCceEEeEEEEeEEEecC
Q 047322 251 PMLLKMVLKNVTVTDSIFTGT--QNGVRIKTWARPSNGFARNIRFRNIIMTKV 301 (343)
Q Consensus 251 ~~~~~~~~~ni~i~n~~~~~~--~~gi~i~~~~~~~~g~i~nI~~~ni~~~~~ 301 (343)
....|++|++... ..| .|..........-....|.|+++...
T Consensus 162 --------g~a~Fe~c~i~s~~~~~g-~itA~~r~~~~~~~Gfvf~~c~itg~ 205 (293)
T PLN02432 162 --------AASLFEKCHLHSLSPNNG-AITAQQRTSASENTGFTFLGCKLTGA 205 (293)
T ss_pred --------ceEEEEeeEEEEecCCCC-eEEecCCCCCCCCceEEEEeeEEccc
Confidence 3567788877642 123 33322211122234567888888753
No 112
>PLN02416 probable pectinesterase/pectinesterase inhibitor
Probab=48.40 E-value=1.6e+02 Score=29.69 Aligned_cols=115 Identities=10% Similarity=0.075 Sum_probs=76.6
Q ss_pred EeceecEEEEeEEEECCCCCCCCCeeeee-CcccEEEEccEEecCCceEEeCCCceeEEEEeeEEcCCceEEEeecccCc
Q 047322 171 IDECVNIMLRKLKINAPSWSPNTDGIHIQ-SSSGITISNSAIMTGDDCISVGPGTKNLWIERIACGPGHGIRMKKALAAL 249 (343)
Q Consensus 171 ~~~~~~v~i~~~~i~~~~~~~~~DGi~~~-~s~nv~I~n~~i~~~dD~i~i~~~~~ni~i~n~~~~~~~gi~i~~~~gs~ 249 (343)
....+++..+|+.|++...........+. .+.++.+.+|.|....|-+...+ ..-.+++|++.+.-.+-+ |.
T Consensus 313 ~v~~~~F~a~nitf~Ntag~~~~QAVAl~v~~D~~~fy~c~~~G~QDTLy~~~--~Rqyy~~C~I~GtVDFIF----G~- 385 (541)
T PLN02416 313 AVSGEGFLARDITIENTAGPEKHQAVALRVNADLVALYRCTINGYQDTLYVHS--FRQFYRECDIYGTIDYIF----GN- 385 (541)
T ss_pred EEECCCeEEEeeEEEECCCCCCCceEEEEEcCccEEEEcceEecccchhccCC--CceEEEeeEEeeccceee----cc-
Confidence 34468899999999986443233444443 45889999999999999888765 356999999998777666 43
Q ss_pred CcccccCcEEEEEEEceEEeCCce--E--EEEEeecCCCCceEEeEEEEeEEEecC
Q 047322 250 GPMLLKMVLKNVTVTDSIFTGTQN--G--VRIKTWARPSNGFARNIRFRNIIMTKV 301 (343)
Q Consensus 250 g~~~~~~~~~ni~i~n~~~~~~~~--g--i~i~~~~~~~~g~i~nI~~~ni~~~~~ 301 (343)
....|+||++.-... | -.|..........-..+.|.|+++...
T Consensus 386 ---------a~avfq~c~i~~~~~~~~~~~~iTA~~r~~~~~~~G~vf~~c~i~~~ 432 (541)
T PLN02416 386 ---------AAVVFQACNIVSKMPMPGQFTVITAQSRDTPDEDTGISIQNCSILAT 432 (541)
T ss_pred ---------ceEEEeccEEEEecCCCCCceEEECCCCCCCCCCCEEEEEeeEEecC
Confidence 467888888865311 1 133222111122345677999999753
No 113
>PLN02176 putative pectinesterase
Probab=46.87 E-value=2.6e+02 Score=26.45 Aligned_cols=105 Identities=6% Similarity=-0.112 Sum_probs=67.6
Q ss_pred EEEecCcEEEEeeEEecCCccEEEEeceecEEEEeEEEECCCCCCCCCeeee-eCcccEEEEccEEecCC---------c
Q 047322 147 SFVGASNIVVSGLTSINSRFFHIAIDECVNIMLRKLKINAPSWSPNTDGIHI-QSSSGITISNSAIMTGD---------D 216 (343)
Q Consensus 147 ~~~~~~nv~i~~v~i~n~~~~~i~~~~~~~v~i~~~~i~~~~~~~~~DGi~~-~~s~nv~I~n~~i~~~d---------D 216 (343)
.....+...+.+++|.. -++.+.. +...--+++|.|+.. +++ .+....++++|.|..-+ -
T Consensus 151 l~v~gDr~~f~~C~f~G-~QDTLy~-~~gRqyf~~CyIeG~--------VDFIFG~a~a~Fe~C~I~s~~~~~~~~~~~g 220 (340)
T PLN02176 151 ARMLGDKYAIIDSSFDG-FQDTLFD-GKGRHYYKRCVISGG--------IDFIFGYAQSIFEGCTLKLTLGIYPPNEPYG 220 (340)
T ss_pred EEecCccEEEEccEEec-ccceeEe-CCcCEEEEecEEEec--------ccEEecCceEEEeccEEEEecccCCCCCCcE
Confidence 33357999999999985 3455544 345678999999974 332 35567999999997532 1
Q ss_pred eEEeCC-----CceeEEEEeeEEcCCceEEEeecccCcCcccccCcEEEEEEEceEEeC
Q 047322 217 CISVGP-----GTKNLWIERIACGPGHGIRMKKALAALGPMLLKMVLKNVTVTDSIFTG 270 (343)
Q Consensus 217 ~i~i~~-----~~~ni~i~n~~~~~~~gi~i~~~~gs~g~~~~~~~~~ni~i~n~~~~~ 270 (343)
.|...+ ...-..|.||++....-+.+ |.-. .+...+.|.|+.|.+
T Consensus 221 ~ITA~~r~~~~~~~GfvF~~C~itg~g~~yL----GRPW-----~~yarvVf~~t~m~~ 270 (340)
T PLN02176 221 TITAQGRPSPSDKGGFVFKDCTVTGVGKALL----GRAW-----GSYARVIFYRSRFSD 270 (340)
T ss_pred EEEeCCCCCCCCCcEEEEECCEEccCcceee----ecCC-----CCCceEEEEecCcCC
Confidence 233322 12467899999975333555 4421 235678888887764
No 114
>COG4677 PemB Pectin methylesterase [Carbohydrate transport and metabolism]
Probab=46.83 E-value=75 Score=29.64 Aligned_cols=112 Identities=11% Similarity=0.096 Sum_probs=64.0
Q ss_pred eecEEEEeEEEECCCC-CC---CCCeeeee-CcccEEEEccEEecCCceEEeCCC----------ceeEEEEeeEEcCCc
Q 047322 174 CVNIMLRKLKINAPSW-SP---NTDGIHIQ-SSSGITISNSAIMTGDDCISVGPG----------TKNLWIERIACGPGH 238 (343)
Q Consensus 174 ~~~v~i~~~~i~~~~~-~~---~~DGi~~~-~s~nv~I~n~~i~~~dD~i~i~~~----------~~ni~i~n~~~~~~~ 238 (343)
-.+..++|+++++... +. +.-..-+. .+..+.++||.+....|-+.++.. .-.-.++||++.+.-
T Consensus 188 ~ndf~~~nlT~en~~gd~~lagn~~AVaL~~dgDka~frnv~llg~QdTlFv~~~~~~~~~~tn~~~R~yftNsyI~Gdv 267 (405)
T COG4677 188 NNDFQLQNLTIENTLGDGVLAGNHPAVALATDGDKAIFRNVNLLGNQDTLFVGNSGVQNRLETNRQPRTYFTNSYIEGDV 267 (405)
T ss_pred cCCcccccceeecccCCccccCCceeEEEEecCCceeeeeeeEeeccceEEecCCCCccccccCcchhhheecceecccc
Confidence 3455666666665321 11 22233332 357899999999888888877764 224578899988776
Q ss_pred eEEEeecccCcCcccccCcEEEEEEEceEEeCCc-----eEEEEEeecCCCCceEEeEEEEeEEEecC
Q 047322 239 GIRMKKALAALGPMLLKMVLKNVTVTDSIFTGTQ-----NGVRIKTWARPSNGFARNIRFRNIIMTKV 301 (343)
Q Consensus 239 gi~i~~~~gs~g~~~~~~~~~ni~i~n~~~~~~~-----~gi~i~~~~~~~~g~i~nI~~~ni~~~~~ 301 (343)
.+-. |+ --..|.+|.|.-.+ +| +|-.. .+..+.--...+-|.++...
T Consensus 268 DfIf----Gs----------gtaVFd~c~i~~~d~r~~~~g-YIfAp-ST~~~~~YGflalNsrfna~ 319 (405)
T COG4677 268 DFIF----GS----------GTAVFDNCEIQVVDSRTQQEG-YIFAP-STLSGIPYGFLALNSRFNAS 319 (405)
T ss_pred eEEe----cc----------ceEEeccceEEEeccCCCcce-eEecc-CCCCCCceeEEEEeeeeecC
Confidence 7666 55 24567777665432 22 22211 11234445556667666544
No 115
>PLN02313 Pectinesterase/pectinesterase inhibitor
Probab=46.81 E-value=1.9e+02 Score=29.56 Aligned_cols=114 Identities=8% Similarity=0.098 Sum_probs=76.9
Q ss_pred eceecEEEEeEEEECCCCCCCCCeeeee-CcccEEEEccEEecCCceEEeCCCceeEEEEeeEEcCCceEEEeecccCcC
Q 047322 172 DECVNIMLRKLKINAPSWSPNTDGIHIQ-SSSGITISNSAIMTGDDCISVGPGTKNLWIERIACGPGHGIRMKKALAALG 250 (343)
Q Consensus 172 ~~~~~v~i~~~~i~~~~~~~~~DGi~~~-~s~nv~I~n~~i~~~dD~i~i~~~~~ni~i~n~~~~~~~gi~i~~~~gs~g 250 (343)
...+++..+|+.|++...........+. .+....+.+|.|....|-+..+++ .-.+++|++.+.-.+-+ |.
T Consensus 359 v~~~~F~a~~itf~Ntag~~~~QAvAlrv~~D~~~fy~C~~~g~QDTLy~~~~--rq~y~~c~I~GtvDFIF----G~-- 430 (587)
T PLN02313 359 AVGERFLARDITFQNTAGPSKHQAVALRVGSDFSAFYQCDMFAYQDTLYVHSN--RQFFVKCHITGTVDFIF----GN-- 430 (587)
T ss_pred EECCCeEEEeeEEEeCCCCCCCceEEEEecCCcEEEEeeeEecccchhccCCC--cEEEEeeEEeeccceec----cc--
Confidence 4567889999999986432233444443 458899999999999999887753 45999999998777665 33
Q ss_pred cccccCcEEEEEEEceEEeCCc--eE--EEEEeecCCCCceEEeEEEEeEEEecC
Q 047322 251 PMLLKMVLKNVTVTDSIFTGTQ--NG--VRIKTWARPSNGFARNIRFRNIIMTKV 301 (343)
Q Consensus 251 ~~~~~~~~~ni~i~n~~~~~~~--~g--i~i~~~~~~~~g~i~nI~~~ni~~~~~ 301 (343)
....|+||++.-.. .| -.|..........-..+.|.|+++...
T Consensus 431 --------a~avfq~c~i~~r~~~~~~~~~iTAqgr~~~~~~tG~v~~~c~i~~~ 477 (587)
T PLN02313 431 --------AAAVLQDCDINARRPNSGQKNMVTAQGRSDPNQNTGIVIQNCRIGGT 477 (587)
T ss_pred --------eeEEEEccEEEEecCCCCCcceEEecCCCCCCCCceEEEEecEEecC
Confidence 57889999887521 11 133322111223345788999999754
No 116
>PLN02301 pectinesterase/pectinesterase inhibitor
Probab=45.48 E-value=2e+02 Score=29.04 Aligned_cols=115 Identities=6% Similarity=0.019 Sum_probs=76.8
Q ss_pred EeceecEEEEeEEEECCCCCCCCCeeeee-CcccEEEEccEEecCCceEEeCCCceeEEEEeeEEcCCceEEEeecccCc
Q 047322 171 IDECVNIMLRKLKINAPSWSPNTDGIHIQ-SSSGITISNSAIMTGDDCISVGPGTKNLWIERIACGPGHGIRMKKALAAL 249 (343)
Q Consensus 171 ~~~~~~v~i~~~~i~~~~~~~~~DGi~~~-~s~nv~I~n~~i~~~dD~i~i~~~~~ni~i~n~~~~~~~gi~i~~~~gs~ 249 (343)
....+++..+|+.|++...........+. .+....+.+|.|....|-+...++ .-.+++|++.+.-.+-+ |.
T Consensus 319 ~v~~~~F~a~nitf~Ntag~~~~QAVAlrv~~D~~~fy~C~~~G~QDTLy~~~~--Rqyy~~C~I~GtVDFIF----G~- 391 (548)
T PLN02301 319 AAVGDGFIAQDIWFQNTAGPEKHQAVALRVSADQAVINRCRIDAYQDTLYAHSL--RQFYRDSYITGTVDFIF----GN- 391 (548)
T ss_pred EEECCceEEEeeEEEECCCCCCCceEEEEecCCcEEEEeeeeeeccccceecCC--cEEEEeeEEEeccceec----cc-
Confidence 34567889999999985432233444443 458899999999999999887753 46999999998767655 43
Q ss_pred CcccccCcEEEEEEEceEEeCCce----EEEEEeecCCCCceEEeEEEEeEEEecC
Q 047322 250 GPMLLKMVLKNVTVTDSIFTGTQN----GVRIKTWARPSNGFARNIRFRNIIMTKV 301 (343)
Q Consensus 250 g~~~~~~~~~ni~i~n~~~~~~~~----gi~i~~~~~~~~g~i~nI~~~ni~~~~~ 301 (343)
....|+||++.-... .-.|..........-..+.|.|+++...
T Consensus 392 ---------a~avfq~c~i~~~~~~~~~~~~iTAqgr~~~~~~tG~vf~~c~i~~~ 438 (548)
T PLN02301 392 ---------AAVVFQNCKIVARKPMAGQKNMVTAQGRTDPNQNTGISIQKCDIIAS 438 (548)
T ss_pred ---------ceeEEeccEEEEecCCCCCCceEEecCCCCCCCCCEEEEEeeEEecC
Confidence 467888888865311 1133322111223445778999999764
No 117
>PLN02201 probable pectinesterase/pectinesterase inhibitor
Probab=45.43 E-value=2.5e+02 Score=28.18 Aligned_cols=115 Identities=5% Similarity=0.005 Sum_probs=77.2
Q ss_pred EeceecEEEEeEEEECCCCCCCCCeeeee-CcccEEEEccEEecCCceEEeCCCceeEEEEeeEEcCCceEEEeecccCc
Q 047322 171 IDECVNIMLRKLKINAPSWSPNTDGIHIQ-SSSGITISNSAIMTGDDCISVGPGTKNLWIERIACGPGHGIRMKKALAAL 249 (343)
Q Consensus 171 ~~~~~~v~i~~~~i~~~~~~~~~DGi~~~-~s~nv~I~n~~i~~~dD~i~i~~~~~ni~i~n~~~~~~~gi~i~~~~gs~ 249 (343)
....+++..+|+.|++...........+. .+....+++|.|....|-+...++ .-.+++|++.+.-.+-+ |.
T Consensus 289 ~v~~~~F~a~nitf~Ntag~~~~QAVAlrv~~D~~~fy~C~f~G~QDTLy~~~~--Rqyy~~C~I~GtVDFIF----G~- 361 (520)
T PLN02201 289 AVSGRGFIARDITFQNTAGPEKHQAVALRSDSDLSVFYRCAMRGYQDTLYTHTM--RQFYRECRITGTVDFIF----GD- 361 (520)
T ss_pred EEECCCeEEEeeEEEECCCCCCCceEEEEEcCCcEEEEeeeeeccCCeeEeCCC--CEEEEeeEEeecccEEe----cC-
Confidence 34567889999999986432233444443 358899999999999999887753 46889999998877666 43
Q ss_pred CcccccCcEEEEEEEceEEeCCc----eEEEEEeecCCCCceEEeEEEEeEEEecC
Q 047322 250 GPMLLKMVLKNVTVTDSIFTGTQ----NGVRIKTWARPSNGFARNIRFRNIIMTKV 301 (343)
Q Consensus 250 g~~~~~~~~~ni~i~n~~~~~~~----~gi~i~~~~~~~~g~i~nI~~~ni~~~~~ 301 (343)
....|+||++.... ..-.|..........-..+.|.|+++...
T Consensus 362 ---------a~avf~~C~i~~~~~~~~~~~~iTAq~r~~~~~~~Gfvf~~C~it~~ 408 (520)
T PLN02201 362 ---------ATAVFQNCQILAKKGLPNQKNTITAQGRKDPNQPTGFSIQFSNISAD 408 (520)
T ss_pred ---------ceEEEEccEEEEecCCCCCCceEEecCCCCCCCCcEEEEEeeEEecC
Confidence 46889999887521 11133322111223345677999998763
No 118
>PRK09810 entericidin A; Provisional
Probab=44.54 E-value=21 Score=22.39 Aligned_cols=14 Identities=21% Similarity=0.102 Sum_probs=6.7
Q ss_pred CchhhHHHHHHHHH
Q 047322 1 MAKLAVSCTLFIFF 14 (343)
Q Consensus 1 m~~~~~~~~~~~~~ 14 (343)
|+|.++.++++.++
T Consensus 1 mMkk~~~l~~~~~~ 14 (41)
T PRK09810 1 MMKRLIVLVLLAST 14 (41)
T ss_pred ChHHHHHHHHHHHH
Confidence 55555444444433
No 119
>PLN02506 putative pectinesterase/pectinesterase inhibitor
Probab=43.91 E-value=1.8e+02 Score=29.38 Aligned_cols=116 Identities=7% Similarity=0.035 Sum_probs=78.2
Q ss_pred EEeceecEEEEeEEEECCCCCCCCCeeeee-CcccEEEEccEEecCCceEEeCCCceeEEEEeeEEcCCceEEEeecccC
Q 047322 170 AIDECVNIMLRKLKINAPSWSPNTDGIHIQ-SSSGITISNSAIMTGDDCISVGPGTKNLWIERIACGPGHGIRMKKALAA 248 (343)
Q Consensus 170 ~~~~~~~v~i~~~~i~~~~~~~~~DGi~~~-~s~nv~I~n~~i~~~dD~i~i~~~~~ni~i~n~~~~~~~gi~i~~~~gs 248 (343)
.....+++..+|+.|++...........+. ...++.+.+|.|....|-+...+ ..-.++||++.+.-.+-+ |.
T Consensus 314 ~~v~~~~F~a~nit~~Ntag~~~~QAVAl~v~~D~~~fy~C~~~G~QDTLy~~~--~rqyy~~C~I~GtVDFIF----G~ 387 (537)
T PLN02506 314 VAVSGRGFIARDITFRNTAGPQNHQAVALRVDSDQSAFYRCSMEGYQDTLYAHS--LRQFYRECEIYGTIDFIF----GN 387 (537)
T ss_pred EEEEcCCeEEEeeEEEeCCCCCCCceEEEEecCCcEEEEcceeecccccceecC--CceEEEeeEEecccceEc----cC
Confidence 345678899999999986432233444443 45899999999999999988775 356999999998777666 43
Q ss_pred cCcccccCcEEEEEEEceEEeCCce----EEEEEeecCCCCceEEeEEEEeEEEecC
Q 047322 249 LGPMLLKMVLKNVTVTDSIFTGTQN----GVRIKTWARPSNGFARNIRFRNIIMTKV 301 (343)
Q Consensus 249 ~g~~~~~~~~~ni~i~n~~~~~~~~----gi~i~~~~~~~~g~i~nI~~~ni~~~~~ 301 (343)
....|+||++.-... .-.|..........-..+.|.|+++...
T Consensus 388 ----------a~avfq~C~i~~r~~~~~~~~~iTA~~r~~~~~~~G~vf~~c~i~~~ 434 (537)
T PLN02506 388 ----------GAAVLQNCKIYTRVPLPLQKVTITAQGRKSPHQSTGFSIQDSYVLAT 434 (537)
T ss_pred ----------ceeEEeccEEEEccCCCCCCceEEccCCCCCCCCcEEEEEcCEEccC
Confidence 468899998875311 1233322111122335677999999763
No 120
>PLN02995 Probable pectinesterase/pectinesterase inhibitor
Probab=43.71 E-value=1.8e+02 Score=29.39 Aligned_cols=114 Identities=10% Similarity=0.049 Sum_probs=76.8
Q ss_pred eceecEEEEeEEEECCCCCCCCCeeeee-CcccEEEEccEEecCCceEEeCCCceeEEEEeeEEcCCceEEEeecccCcC
Q 047322 172 DECVNIMLRKLKINAPSWSPNTDGIHIQ-SSSGITISNSAIMTGDDCISVGPGTKNLWIERIACGPGHGIRMKKALAALG 250 (343)
Q Consensus 172 ~~~~~v~i~~~~i~~~~~~~~~DGi~~~-~s~nv~I~n~~i~~~dD~i~i~~~~~ni~i~n~~~~~~~gi~i~~~~gs~g 250 (343)
...+++..+|++|++...........+. .+....+++|.|....|-+...+ ..-.+++|++.+.-.+-+ |.
T Consensus 309 v~~~~F~a~nitf~Ntag~~~~QAVAlrv~~Dr~~f~~c~~~G~QDTLy~~~--~Rqyy~~C~I~GtVDFIF----G~-- 380 (539)
T PLN02995 309 IEGLHFIAKGITFRNTAGPAKGQAVALRSSSDLSIFYKCSIEGYQDTLMVHS--QRQFYRECYIYGTVDFIF----GN-- 380 (539)
T ss_pred EECCCeEEEeeEEEeCCCCCCCceEEEEEcCCceeEEcceEecccchhccCC--CceEEEeeEEeeccceEe----cc--
Confidence 4567899999999985432233444443 45889999999999999888765 356999999998777666 43
Q ss_pred cccccCcEEEEEEEceEEeCCce----EEEEEeecCCCCceEEeEEEEeEEEecC
Q 047322 251 PMLLKMVLKNVTVTDSIFTGTQN----GVRIKTWARPSNGFARNIRFRNIIMTKV 301 (343)
Q Consensus 251 ~~~~~~~~~ni~i~n~~~~~~~~----gi~i~~~~~~~~g~i~nI~~~ni~~~~~ 301 (343)
....|+||++.-... .-.|..........-..+.|.|+++...
T Consensus 381 --------a~avf~~C~i~~~~~~~~~~~~iTA~~r~~~~~~~G~vf~~c~i~~~ 427 (539)
T PLN02995 381 --------AAAVFQNCIILPRRPLKGQANVITAQGRADPFQNTGISIHNSRILPA 427 (539)
T ss_pred --------cceEEeccEEEEecCCCCCcceEecCCCCCCCCCceEEEEeeEEecC
Confidence 467888888865311 1234322111223346788999999874
No 121
>PF13956 Ibs_toxin: Toxin Ibs, type I toxin-antitoxin system
Probab=43.44 E-value=15 Score=18.53 Aligned_cols=11 Identities=27% Similarity=0.440 Sum_probs=6.2
Q ss_pred CchhhHHHHHH
Q 047322 1 MAKLAVSCTLF 11 (343)
Q Consensus 1 m~~~~~~~~~~ 11 (343)
|+|+.+.|..+
T Consensus 1 MMk~vIIlvvL 11 (19)
T PF13956_consen 1 MMKLVIILVVL 11 (19)
T ss_pred CceehHHHHHH
Confidence 77766544433
No 122
>PLN02713 Probable pectinesterase/pectinesterase inhibitor
Probab=43.33 E-value=2.3e+02 Score=28.83 Aligned_cols=113 Identities=6% Similarity=0.003 Sum_probs=77.4
Q ss_pred eceecEEEEeEEEECCCCCCCCCeeeee-CcccEEEEccEEecCCceEEeCCCceeEEEEeeEEcCCceEEEeecccCcC
Q 047322 172 DECVNIMLRKLKINAPSWSPNTDGIHIQ-SSSGITISNSAIMTGDDCISVGPGTKNLWIERIACGPGHGIRMKKALAALG 250 (343)
Q Consensus 172 ~~~~~v~i~~~~i~~~~~~~~~DGi~~~-~s~nv~I~n~~i~~~dD~i~i~~~~~ni~i~n~~~~~~~gi~i~~~~gs~g 250 (343)
...+++..+|++|++...........+. .+....+.+|.|....|-+...++ .-.+++|++++.-.+-+ |.
T Consensus 337 v~~~~F~a~nitf~Ntag~~~~QAVAlrv~~D~~~fy~C~~~G~QDTLy~~~~--Rqyy~~C~I~GtVDFIF----G~-- 408 (566)
T PLN02713 337 VVGQNFVAVNITFRNTAGPAKHQAVALRSGADLSTFYSCSFEAYQDTLYTHSL--RQFYRECDIYGTVDFIF----GN-- 408 (566)
T ss_pred EECCCeEEEeeEEEeCCCCCCCceEEEEecCCcEEEEeeeeccCCcceEECCC--CEEEEeeEEecccceec----cc--
Confidence 4568899999999986432333444443 458899999999999999988753 56999999998767665 43
Q ss_pred cccccCcEEEEEEEceEEeCCc-----eEEEEEeecCCCCceEEeEEEEeEEEecC
Q 047322 251 PMLLKMVLKNVTVTDSIFTGTQ-----NGVRIKTWARPSNGFARNIRFRNIIMTKV 301 (343)
Q Consensus 251 ~~~~~~~~~ni~i~n~~~~~~~-----~gi~i~~~~~~~~g~i~nI~~~ni~~~~~ 301 (343)
....|+||++.-.. .+ .|..........-..+.|.|+++...
T Consensus 409 --------a~avfq~C~i~~~~~~~~~~~-~iTAq~r~~~~~~~G~vf~~c~i~~~ 455 (566)
T PLN02713 409 --------AAVVFQNCNLYPRLPMQGQFN-TITAQGRTDPNQNTGTSIQNCTIKAA 455 (566)
T ss_pred --------ceEEEeccEEEEecCCCCCcc-eeeecCCCCCCCCCEEEEEcCEEecC
Confidence 47789999886521 12 33322111223345778999999753
No 123
>PLN02484 probable pectinesterase/pectinesterase inhibitor
Probab=42.85 E-value=2.2e+02 Score=29.06 Aligned_cols=115 Identities=7% Similarity=0.073 Sum_probs=77.2
Q ss_pred EeceecEEEEeEEEECCCCCCCCCeeeee-CcccEEEEccEEecCCceEEeCCCceeEEEEeeEEcCCceEEEeecccCc
Q 047322 171 IDECVNIMLRKLKINAPSWSPNTDGIHIQ-SSSGITISNSAIMTGDDCISVGPGTKNLWIERIACGPGHGIRMKKALAAL 249 (343)
Q Consensus 171 ~~~~~~v~i~~~~i~~~~~~~~~DGi~~~-~s~nv~I~n~~i~~~dD~i~i~~~~~ni~i~n~~~~~~~gi~i~~~~gs~ 249 (343)
....+++..+|+.|++...........+. ...+..+.+|.|....|-+...+ ..-.+++|++.+.-.+-+ |.
T Consensus 356 ~v~~~~F~a~~itf~Ntag~~~~QAvAlrv~~D~~~fy~C~~~G~QDTLy~~~--~Rqyy~~C~I~GtVDFIF----G~- 428 (587)
T PLN02484 356 AATGAGFIARDMTFENWAGPAKHQAVALRVGADHAVVYRCNIIGYQDTLYVHS--NRQFFRECDIYGTVDFIF----GN- 428 (587)
T ss_pred EEEcCCEEEEeeEEEECCCCCCCceEEEEecCCcEEEEeeeEeccCcccccCC--CcEEEEecEEEeccceec----cc-
Confidence 44567889999999985432233444443 45889999999999999888775 356899999998766655 43
Q ss_pred CcccccCcEEEEEEEceEEeCCc----eEEEEEeecCCCCceEEeEEEEeEEEecC
Q 047322 250 GPMLLKMVLKNVTVTDSIFTGTQ----NGVRIKTWARPSNGFARNIRFRNIIMTKV 301 (343)
Q Consensus 250 g~~~~~~~~~ni~i~n~~~~~~~----~gi~i~~~~~~~~g~i~nI~~~ni~~~~~ 301 (343)
....|+||++.-.. ..-.|..........-..+.|.|+++...
T Consensus 429 ---------a~avfq~C~i~~~~~~~~~~~~ITAq~r~~~~~~~G~vf~~c~i~~~ 475 (587)
T PLN02484 429 ---------AAVVLQNCSIYARKPMAQQKNTITAQNRKDPNQNTGISIHACRILAA 475 (587)
T ss_pred ---------ceeEEeccEEEEecCCCCCceEEEecCCCCCCCCcEEEEEeeEEecC
Confidence 46788999886421 11233322111223345778999999763
No 124
>PLN02990 Probable pectinesterase/pectinesterase inhibitor
Probab=42.50 E-value=2.6e+02 Score=28.52 Aligned_cols=115 Identities=9% Similarity=0.058 Sum_probs=77.3
Q ss_pred eceecEEEEeEEEECCCCCCCCCeeeee-CcccEEEEccEEecCCceEEeCCCceeEEEEeeEEcCCceEEEeecccCcC
Q 047322 172 DECVNIMLRKLKINAPSWSPNTDGIHIQ-SSSGITISNSAIMTGDDCISVGPGTKNLWIERIACGPGHGIRMKKALAALG 250 (343)
Q Consensus 172 ~~~~~v~i~~~~i~~~~~~~~~DGi~~~-~s~nv~I~n~~i~~~dD~i~i~~~~~ni~i~n~~~~~~~gi~i~~~~gs~g 250 (343)
...+++..+|++|++...........+. .+....+.+|.|....|-+...+ ..-.+++|++.+.-.+-+ |.
T Consensus 344 v~~~~F~a~nitf~Ntag~~~~QAVAlrv~~D~~~f~~c~~~G~QDTLy~~~--~Rqyy~~C~I~GtVDFIF----G~-- 415 (572)
T PLN02990 344 INGDHFTAKNIGFENTAGPEGHQAVALRVSADYAVFYNCQIDGYQDTLYVHS--HRQFFRDCTVSGTVDFIF----GD-- 415 (572)
T ss_pred EEcCCEEEEeeEEEeCCCCCCCceEEEEEcCCcEEEEeeeEecccchhccCC--CcEEEEeeEEecccceEc----cC--
Confidence 3567889999999985432233444443 45889999999999999888765 356899999998877666 43
Q ss_pred cccccCcEEEEEEEceEEeCCc--e--EEEEEeecCCCCceEEeEEEEeEEEecCC
Q 047322 251 PMLLKMVLKNVTVTDSIFTGTQ--N--GVRIKTWARPSNGFARNIRFRNIIMTKVF 302 (343)
Q Consensus 251 ~~~~~~~~~ni~i~n~~~~~~~--~--gi~i~~~~~~~~g~i~nI~~~ni~~~~~~ 302 (343)
....|+||++.-.. . .-.|..........-..+.|.|+++....
T Consensus 416 --------a~avf~~C~i~~~~~~~~~~~~iTAq~r~~~~~~~G~vf~~C~it~~~ 463 (572)
T PLN02990 416 --------AKVVLQNCNIVVRKPMKGQSCMITAQGRSDVRESTGLVLQNCHITGEP 463 (572)
T ss_pred --------ceEEEEccEEEEecCCCCCceEEEeCCCCCCCCCceEEEEeeEEecCc
Confidence 46788999886421 1 12343221111223456789999998753
No 125
>PLN02314 pectinesterase
Probab=41.91 E-value=2.4e+02 Score=28.83 Aligned_cols=115 Identities=5% Similarity=0.014 Sum_probs=77.8
Q ss_pred EeceecEEEEeEEEECCCCCCCCCeeeee-CcccEEEEccEEecCCceEEeCCCceeEEEEeeEEcCCceEEEeecccCc
Q 047322 171 IDECVNIMLRKLKINAPSWSPNTDGIHIQ-SSSGITISNSAIMTGDDCISVGPGTKNLWIERIACGPGHGIRMKKALAAL 249 (343)
Q Consensus 171 ~~~~~~v~i~~~~i~~~~~~~~~DGi~~~-~s~nv~I~n~~i~~~dD~i~i~~~~~ni~i~n~~~~~~~gi~i~~~~gs~ 249 (343)
....+++..+|+.|++...........+. .+....+.+|.|....|-+...++ .-.+++|++.+.-.+-+ |.
T Consensus 361 ~v~~~~F~a~~itf~Ntag~~~~QAvAlrv~~D~~~f~~c~~~G~QDTLy~~~~--rq~y~~C~I~GtvDFIF----G~- 433 (586)
T PLN02314 361 AAAGKGFIAKDMGFINTAGAAKHQAVAFRSGSDMSVFYQCSFDAFQDTLYAHSN--RQFYRDCDITGTIDFIF----GN- 433 (586)
T ss_pred EEEcCCeEEEeeEEEECCCCCCCceEEEEecCCcEEEEeeEEEeccchheeCCC--CEEEEeeEEEeccceec----cC-
Confidence 34567889999999985432233444443 457899999999999999887753 46999999998777666 43
Q ss_pred CcccccCcEEEEEEEceEEeCCc-----eEEEEEeecCCCCceEEeEEEEeEEEecCC
Q 047322 250 GPMLLKMVLKNVTVTDSIFTGTQ-----NGVRIKTWARPSNGFARNIRFRNIIMTKVF 302 (343)
Q Consensus 250 g~~~~~~~~~ni~i~n~~~~~~~-----~gi~i~~~~~~~~g~i~nI~~~ni~~~~~~ 302 (343)
....|+||++.-.. .+ .|..........-..+.|.|+++....
T Consensus 434 ---------a~avf~~c~i~~~~~~~~~~~-~iTA~~r~~~~~~~G~vf~~c~i~~~~ 481 (586)
T PLN02314 434 ---------AAVVFQNCNIQPRQPLPNQFN-TITAQGKKDPNQNTGISIQRCTISAFG 481 (586)
T ss_pred ---------ceeeeeccEEEEecCCCCCCc-eEecCCCCCCCCCCEEEEEeeEEecCC
Confidence 46788999886421 12 333221112234456789999998753
No 126
>COG4259 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=41.66 E-value=43 Score=25.60 Aligned_cols=63 Identities=21% Similarity=0.163 Sum_probs=32.8
Q ss_pred Cchhh-HH---HHHHHHHhhhccccCCceEEEeecC------ccCCCC-cchHHHHHHHHHHhhhcCCCcEEEEcCcE
Q 047322 1 MAKLA-VS---CTLFIFFINTLFQSASAAYNVINFG------AKPDGK-SDATQAFLRAWSSACYSNSPATLHVPRGL 67 (343)
Q Consensus 1 m~~~~-~~---~~~~~~~~~~~~~~~~~~~~v~d~G------A~gdg~-tDdt~Aiq~Ai~~a~~~~~g~~V~ip~G~ 67 (343)
|++++ ++ |++...+.+.+...+...++-.-|- -++|.+ .-+++|+.+-|..+-+ . ..-+|||-
T Consensus 1 M~~~ktlsr~al~~av~~LagC~~gpKslY~w~gYq~tvyEy~K~~es~e~Q~~~le~~~ek~~a-k---~~~vpPG~ 74 (121)
T COG4259 1 MSKLKTLSRLALLLAVAALAGCGGGPKSLYQWEGYQDTVYEYFKGDESKEAQTAALEKYLEKIGA-K---NGAVPPGY 74 (121)
T ss_pred CcchHHHHHHHHHHHHHHHHHccCCCccccccCCccHHHHHHHcCCCCHHHHHHHHHHHHHHHhh-c---CCCCCCcH
Confidence 66655 22 3333333333444444444444442 356543 5677888888876522 2 23579985
No 127
>PLN03043 Probable pectinesterase/pectinesterase inhibitor; Provisional
Probab=41.18 E-value=2.4e+02 Score=28.47 Aligned_cols=114 Identities=5% Similarity=0.001 Sum_probs=77.7
Q ss_pred EeceecEEEEeEEEECCCCCCCCCeeeee-CcccEEEEccEEecCCceEEeCCCceeEEEEeeEEcCCceEEEeecccCc
Q 047322 171 IDECVNIMLRKLKINAPSWSPNTDGIHIQ-SSSGITISNSAIMTGDDCISVGPGTKNLWIERIACGPGHGIRMKKALAAL 249 (343)
Q Consensus 171 ~~~~~~v~i~~~~i~~~~~~~~~DGi~~~-~s~nv~I~n~~i~~~dD~i~i~~~~~ni~i~n~~~~~~~gi~i~~~~gs~ 249 (343)
....+++..+|+.|++...........+. .+....+.+|.|....|-+...++ .-.++||++.+.-.+-+ |.
T Consensus 309 ~v~~~~F~a~~it~~Ntag~~~~QAvAlrv~~D~~~f~~C~~~gyQDTLy~~~~--rq~y~~c~I~GtVDFIF----G~- 381 (538)
T PLN03043 309 AVSGERFVAVDVTFRNTAGPEKHQAVALRNNADLSTFYRCSFEGYQDTLYVHSL--RQFYRECDIYGTVDFIF----GN- 381 (538)
T ss_pred EEECCCEEEEeeEEEECCCCCCCceEEEEEcCCcEEEEeeEEeccCcccccCCC--cEEEEeeEEeeccceEe----ec-
Confidence 44568899999999986432233445443 457899999999999999887753 56999999998777666 43
Q ss_pred CcccccCcEEEEEEEceEEeCCc-----eEEEEEeecCCCCceEEeEEEEeEEEecC
Q 047322 250 GPMLLKMVLKNVTVTDSIFTGTQ-----NGVRIKTWARPSNGFARNIRFRNIIMTKV 301 (343)
Q Consensus 250 g~~~~~~~~~ni~i~n~~~~~~~-----~gi~i~~~~~~~~g~i~nI~~~ni~~~~~ 301 (343)
....|+||++.-.. .+ .|..........-..+.|.|+++...
T Consensus 382 ---------a~avfq~c~i~~r~~~~~~~~-~iTA~~r~~~~~~tG~~~~~c~i~~~ 428 (538)
T PLN03043 382 ---------AAAIFQNCNLYARKPMANQKN-AFTAQGRTDPNQNTGISIINCTIEAA 428 (538)
T ss_pred ---------ceeeeeccEEEEecCCCCCCc-eEEecCCCCCCCCceEEEEecEEecC
Confidence 46789999886521 12 23322111223345688999999763
No 128
>PRK10053 hypothetical protein; Provisional
Probab=40.89 E-value=18 Score=29.02 Aligned_cols=19 Identities=21% Similarity=0.240 Sum_probs=11.4
Q ss_pred CchhhHHHHHHHHHhhhcc
Q 047322 1 MAKLAVSCTLFIFFINTLF 19 (343)
Q Consensus 1 m~~~~~~~~~~~~~~~~~~ 19 (343)
|||.++.+++++++.++.+
T Consensus 1 MKK~~~~~~~~~~s~~~~A 19 (130)
T PRK10053 1 MKLQAIALASFLVMPYALA 19 (130)
T ss_pred CcHHHHHHHHHHHHHHHHH
Confidence 8998766655554444333
No 129
>PLN02682 pectinesterase family protein
Probab=40.54 E-value=3.4e+02 Score=26.00 Aligned_cols=103 Identities=4% Similarity=-0.022 Sum_probs=68.6
Q ss_pred EecCcEEEEeeEEecCCccEEEEeceecEEEEeEEEECCCCCCCCCeeee-eCcccEEEEccEEecCC---ceEEeCC--
Q 047322 149 VGASNIVVSGLTSINSRFFHIAIDECVNIMLRKLKINAPSWSPNTDGIHI-QSSSGITISNSAIMTGD---DCISVGP-- 222 (343)
Q Consensus 149 ~~~~nv~i~~v~i~n~~~~~i~~~~~~~v~i~~~~i~~~~~~~~~DGi~~-~~s~nv~I~n~~i~~~d---D~i~i~~-- 222 (343)
...+...+.+++|... ++.+.. +...--+++|.|+.. +++ .+.-..++++|+|..-. -.|...+
T Consensus 193 v~gDr~~fy~C~f~G~-QDTLy~-~~gRqyf~~C~IeG~--------VDFIFG~g~a~Fe~C~I~s~~~~~G~ITA~~r~ 262 (369)
T PLN02682 193 ISADTAAFYGCKFLGA-QDTLYD-HLGRHYFKDCYIEGS--------VDFIFGNGLSLYEGCHLHAIARNFGALTAQKRQ 262 (369)
T ss_pred ecCCcEEEEcceEecc-ccceEE-CCCCEEEEeeEEccc--------ccEEecCceEEEEccEEEEecCCCeEEecCCCC
Confidence 3589999999999864 455543 345678999999974 333 35568999999997522 2333322
Q ss_pred ---CceeEEEEeeEEcCCceEEEeecccCcCcccccCcEEEEEEEceEEeC
Q 047322 223 ---GTKNLWIERIACGPGHGIRMKKALAALGPMLLKMVLKNVTVTDSIFTG 270 (343)
Q Consensus 223 ---~~~ni~i~n~~~~~~~gi~i~~~~gs~g~~~~~~~~~ni~i~n~~~~~ 270 (343)
...-..|.||++....-+.+ |.- =.+...+.|.|+.|.+
T Consensus 263 ~~~~~~GfvF~~C~itg~g~~yL----GRp-----W~~yarvVf~~t~m~~ 304 (369)
T PLN02682 263 SVLEDTGFSFVNCKVTGSGALYL----GRA-----WGTFSRVVFAYTYMDN 304 (369)
T ss_pred CCCCCceEEEEeeEecCCCceEe----ecC-----CCCcceEEEEeccCCC
Confidence 12467899999976444666 542 1245788888888765
No 130
>PRK15240 resistance to complement killing; Provisional
Probab=38.57 E-value=33 Score=29.28 Aligned_cols=17 Identities=24% Similarity=0.110 Sum_probs=10.7
Q ss_pred CchhhHHHHHHHHHhhh
Q 047322 1 MAKLAVSCTLFIFFINT 17 (343)
Q Consensus 1 m~~~~~~~~~~~~~~~~ 17 (343)
|||.++++++++++...
T Consensus 1 Mkk~~~~~~~~~~~~~~ 17 (185)
T PRK15240 1 MKKIVLSSLLLSAAGLA 17 (185)
T ss_pred CchhHHHHHHHHHHHhc
Confidence 89988766554444433
No 131
>PF11106 YjbE: Exopolysaccharide production protein YjbE
Probab=37.94 E-value=26 Score=25.05 Aligned_cols=16 Identities=13% Similarity=0.150 Sum_probs=9.8
Q ss_pred CchhhHHHHHHHHHhh
Q 047322 1 MAKLAVSCTLFIFFIN 16 (343)
Q Consensus 1 m~~~~~~~~~~~~~~~ 16 (343)
|||.++.+++++.|..
T Consensus 1 MKK~~~~~~~i~~l~~ 16 (80)
T PF11106_consen 1 MKKIIYGLFAILALAS 16 (80)
T ss_pred ChhHHHHHHHHHHHHh
Confidence 8998865554444443
No 132
>TIGR02052 MerP mercuric transport protein periplasmic component. This model represents the periplasmic mercury (II) binding protein of the bacterial mercury detoxification system which passes mercuric ion to the MerT transporter for subsequent reduction to Hg(0) by the mercuric reductase MerA. MerP contains a distinctive GMTCXXC motif associated with metal binding. MerP is related to a larger family of metal binding proteins (pfam00403).
Probab=37.13 E-value=23 Score=25.05 Aligned_cols=16 Identities=38% Similarity=0.409 Sum_probs=11.2
Q ss_pred CchhhHHHHHHHHHhh
Q 047322 1 MAKLAVSCTLFIFFIN 16 (343)
Q Consensus 1 m~~~~~~~~~~~~~~~ 16 (343)
|||++.+|+++++++.
T Consensus 1 ~~~~~~~~~~~~~~~~ 16 (92)
T TIGR02052 1 MKKLATLLALFVLTSL 16 (92)
T ss_pred ChhHHHHHHHHHHhcc
Confidence 8888877777665554
No 133
>PLN02933 Probable pectinesterase/pectinesterase inhibitor
Probab=36.86 E-value=4.6e+02 Score=26.47 Aligned_cols=115 Identities=5% Similarity=0.018 Sum_probs=76.6
Q ss_pred EeceecEEEEeEEEECCCCCCCCCeeeee-CcccEEEEccEEecCCceEEeCCCceeEEEEeeEEcCCceEEEeecccCc
Q 047322 171 IDECVNIMLRKLKINAPSWSPNTDGIHIQ-SSSGITISNSAIMTGDDCISVGPGTKNLWIERIACGPGHGIRMKKALAAL 249 (343)
Q Consensus 171 ~~~~~~v~i~~~~i~~~~~~~~~DGi~~~-~s~nv~I~n~~i~~~dD~i~i~~~~~ni~i~n~~~~~~~gi~i~~~~gs~ 249 (343)
....+++..+|++|++...........+. .+.+..+.+|.|....|-+...++ .-.+++|++.+.-.+-+ |.
T Consensus 301 ~v~a~~F~a~nitf~Ntag~~~~QAVAlrv~~Dra~fy~C~f~G~QDTLy~~~~--Rqyy~~C~IeGtVDFIF----G~- 373 (530)
T PLN02933 301 GVKGKGFIAKDISFVNYAGPAKHQAVALRSGSDHSAFYRCEFDGYQDTLYVHSA--KQFYRECDIYGTIDFIF----GN- 373 (530)
T ss_pred EEECCCEEEEeeEEEECCCCCCCceEEEEEcCCcEEEEEeEEEecccccccCCC--ceEEEeeEEecccceec----cC-
Confidence 44567889999999985432233445543 458899999999999998887753 45999999998777666 43
Q ss_pred CcccccCcEEEEEEEceEEeCCc----eEEEEEeecCCCCceEEeEEEEeEEEecC
Q 047322 250 GPMLLKMVLKNVTVTDSIFTGTQ----NGVRIKTWARPSNGFARNIRFRNIIMTKV 301 (343)
Q Consensus 250 g~~~~~~~~~ni~i~n~~~~~~~----~gi~i~~~~~~~~g~i~nI~~~ni~~~~~ 301 (343)
....|+||++.-.. ..-.|..........-..+.|.|+++...
T Consensus 374 ---------a~avFq~C~i~~~~~~~~~~~~iTAq~r~~~~~~tGfvf~~C~it~~ 420 (530)
T PLN02933 374 ---------AAVVFQNCSLYARKPNPNHKIAFTAQSRNQSDQPTGISIISSRILAA 420 (530)
T ss_pred ---------ceEEEeccEEEEeccCCCCceEEEecCCCCCCCCceEEEEeeEEecC
Confidence 35788888886421 11233322111223335678999999763
No 134
>PF11948 DUF3465: Protein of unknown function (DUF3465); InterPro: IPR021856 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 131 to 151 amino acids in length. This protein has a conserved HWTH sequence motif.
Probab=36.73 E-value=2.2e+02 Score=22.81 Aligned_cols=14 Identities=7% Similarity=-0.021 Sum_probs=8.9
Q ss_pred CchhhHHHHHHHHH
Q 047322 1 MAKLAVSCTLFIFF 14 (343)
Q Consensus 1 m~~~~~~~~~~~~~ 14 (343)
|||++.+++..++.
T Consensus 1 m~~~~~~~~~~~~~ 14 (131)
T PF11948_consen 1 MKRFLALFLSVLSA 14 (131)
T ss_pred CcchHHHHHHHHHH
Confidence 88887666554443
No 135
>KOG1777 consensus Putative Zn-finger protein [General function prediction only]
Probab=36.61 E-value=4.2e+02 Score=25.98 Aligned_cols=187 Identities=8% Similarity=0.015 Sum_probs=0.0
Q ss_pred HHHHHHHHHhhhcCCCcEEEEcCcEEEEEeEEecCCCcccEEEEEe--eEEEecCCcCCcCCCcceEEEEeeeeEEEEcc
Q 047322 43 QAFLRAWSSACYSNSPATLHVPRGLFLVKSISFNGPCRHRIVFQID--GTIIAPSSYWSLGNSGFWILFYKVNRLSIHGG 120 (343)
Q Consensus 43 ~Aiq~Ai~~a~~~~~g~~V~ip~G~Y~~~~l~l~~~~ks~~~l~~~--g~l~~~~~~~~~~~~~~~i~~~~~~ni~I~GG 120 (343)
+-|.+|+...-.....+.+++-+|+|....+.+ .|.+++..+ +.+ ++.|.++|
T Consensus 33 D~iEea~~~l~e~~~e~LIFlH~G~~e~~~i~I----~sdvqiiGAs~~di--------------------a~sVvle~- 87 (625)
T KOG1777|consen 33 DHIEEALRFLDENDEEKLIFLHEGTHETETIRI----TSDVQIIGASPSDI--------------------ATSVVLEG- 87 (625)
T ss_pred hhHHHHhhhcccccccceEEEEeccccceEEEE----cCCeeEeccCCccc--------------------eeeEEEec-
Q ss_pred eEeCCCCccccccCCCCCCCCCceEEEEEecCcEEEEeeEEecCCccEEEEeceecE------EEEeEEEECCCCCCCCC
Q 047322 121 TIDATGAGYWACRKSGKSCPPPTRSISFVGASNIVVSGLTSINSRFFHIAIDECVNI------MLRKLKINAPSWSPNTD 194 (343)
Q Consensus 121 ~idg~g~~~w~~~~~~~~~~~~~~~i~~~~~~nv~i~~v~i~n~~~~~i~~~~~~~v------~i~~~~i~~~~~~~~~D 194 (343)
.+.-.+.-.++..+--++++-.+...-+...|.++ .+++|.|.++...+.+-
T Consensus 88 ----------------------~~~t~l~F~~~AY~Gy~Tvkf~~d~~h~~h~~ld~~~d~~p~ie~c~i~s~~~~g~Av 145 (625)
T KOG1777|consen 88 ----------------------RHATTLEFQESAYVGYVTVKFEPDQEHHAHVCLDIEVDASPAIEECIIRSTGGVGAAV 145 (625)
T ss_pred ----------------------ccccEEEEeecceEEEEEEEeccccccceeEEEeeccCCCcccccccccCCCccCccc
Q ss_pred ---------------------eeeeeCcccEEEEccEEecCCceEEeCCCceeEEEEeeEEcCCc--e-EEEeecccCcC
Q 047322 195 ---------------------GIHIQSSSGITISNSAIMTGDDCISVGPGTKNLWIERIACGPGH--G-IRMKKALAALG 250 (343)
Q Consensus 195 ---------------------Gi~~~~s~nv~I~n~~i~~~dD~i~i~~~~~ni~i~n~~~~~~~--g-i~i~~~~gs~g 250 (343)
|+.+..----.+++|.|....++--.....-+=++++|+|..+. | +.+.-|-|..
T Consensus 146 cv~g~a~P~~~~c~isDceNvglyvTd~a~g~yEh~ei~~NalA~vwvknha~p~~R~~~ih~G~dvGiftf~hg~Gy~- 224 (625)
T KOG1777|consen 146 CVPGEAEPEIKLCAISDCENVGLYVTDHAQGIYEHCEISRNALAGVWVKNHAFPTMRNCTIHHGRDVGIFTFEHGQGYF- 224 (625)
T ss_pred ccCCccCcceeecccccCcceeEEEEeccccceecchhccccccceeeccccChhhhhceeecCCccceEEeccCcCCC-
Q ss_pred cccccCcEEEEEEEceEEeCCceEEEEEee
Q 047322 251 PMLLKMVLKNVTVTDSIFTGTQNGVRIKTW 280 (343)
Q Consensus 251 ~~~~~~~~~ni~i~n~~~~~~~~gi~i~~~ 280 (343)
+.-.+..-.++.+.+....+++.+++.
T Consensus 225 ---e~cd~~qnlisg~eVkf~anp~~~rce 251 (625)
T KOG1777|consen 225 ---ESCDIHQNLISGIEVKFRANPIVLRCE 251 (625)
T ss_pred ---ccchHHHhhhcceEEEeeccceEEEEE
No 136
>PRK09752 adhesin; Provisional
Probab=36.13 E-value=6.6e+02 Score=28.08 Aligned_cols=12 Identities=8% Similarity=0.105 Sum_probs=6.0
Q ss_pred CcEEEEeeEEec
Q 047322 152 SNIVVSGLTSIN 163 (343)
Q Consensus 152 ~nv~i~~v~i~n 163 (343)
..+.|.++.|.+
T Consensus 121 ~~itI~ns~F~n 132 (1250)
T PRK09752 121 STLNLTDVIFSG 132 (1250)
T ss_pred ceeEEeeeEEEc
Confidence 335555555553
No 137
>PLN02304 probable pectinesterase
Probab=35.66 E-value=4.1e+02 Score=25.54 Aligned_cols=104 Identities=9% Similarity=0.028 Sum_probs=67.0
Q ss_pred EEecCcEEEEeeEEecCCccEEEEeceecEEEEeEEEECCCCCCCCCeeee-eCcccEEEEccEEecCCc----------
Q 047322 148 FVGASNIVVSGLTSINSRFFHIAIDECVNIMLRKLKINAPSWSPNTDGIHI-QSSSGITISNSAIMTGDD---------- 216 (343)
Q Consensus 148 ~~~~~nv~i~~v~i~n~~~~~i~~~~~~~v~i~~~~i~~~~~~~~~DGi~~-~~s~nv~I~n~~i~~~dD---------- 216 (343)
....+...+.+++|... ++.+... ...--+++|.|+.. +++ .+.-..++++|.|.+...
T Consensus 191 ~v~gDra~fy~C~f~G~-QDTLy~~-~gR~Yf~~CyIeG~--------VDFIFG~g~A~Fe~C~I~s~~~~~~~g~~~~~ 260 (379)
T PLN02304 191 RIAGDQAAFWGCGFFGA-QDTLHDD-RGRHYFKDCYIQGS--------IDFIFGDARSLYENCRLISMANPVPPGSKSIN 260 (379)
T ss_pred EecCCcEEEEeceEecc-cceeEeC-CCCEEEEeeEEccc--------ccEEeccceEEEEccEEEEecCCcccccccCc
Confidence 33589999999999764 4555433 34578999999974 343 355678999999876321
Q ss_pred -eEEeCC-----CceeEEEEeeEEcCCceEEEeecccCcCcccccCcEEEEEEEceEEeC
Q 047322 217 -CISVGP-----GTKNLWIERIACGPGHGIRMKKALAALGPMLLKMVLKNVTVTDSIFTG 270 (343)
Q Consensus 217 -~i~i~~-----~~~ni~i~n~~~~~~~gi~i~~~~gs~g~~~~~~~~~ni~i~n~~~~~ 270 (343)
.|...+ ...-..|.||.+....-+.+ |.-. .+...+.|.++.|.+
T Consensus 261 G~ITA~~Rt~~~~~~GfvF~~C~itg~g~vyL----GRPW-----~pysrvVf~~t~m~~ 311 (379)
T PLN02304 261 GAVTAHGRTSKDENTGFSFVNCTIGGTGRIWL----GRAW-----RPYSRVVFAYTSMTD 311 (379)
T ss_pred eEEEecCCCCCCCCceEEEECCEEccCcceee----cCCC-----CCcceEEEEecccCC
Confidence 233321 12467889999865333556 5421 245778888887765
No 138
>PF07437 YfaZ: YfaZ precursor; InterPro: IPR009998 This family contains the precursor of the bacterial protein YfaZ (approximately 180 residues long). Many members of this family are hypothetical proteins.
Probab=35.45 E-value=29 Score=29.52 Aligned_cols=22 Identities=9% Similarity=0.244 Sum_probs=14.3
Q ss_pred CchhhHHHHHHHHHhhhccccC
Q 047322 1 MAKLAVSCTLFIFFINTLFQSA 22 (343)
Q Consensus 1 m~~~~~~~~~~~~~~~~~~~~~ 22 (343)
|||+++.+++++++.++.+.+.
T Consensus 1 m~k~~~a~~~~l~~~s~~a~A~ 22 (180)
T PF07437_consen 1 MKKFLLASAAALLLVSASANAI 22 (180)
T ss_pred CchHHHHHHHHHHHHhhhhhee
Confidence 8998877666666555444444
No 139
>PF05342 Peptidase_M26_N: M26 IgA1-specific Metallo-endopeptidase N-terminal region; InterPro: IPR008006 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases corresponds to MEROPS peptidase family M26 (clan MA(E)). The active site residues for members of this family and family M4 occur in the motif HEXXH. The type example is IgA1-specific metalloendopeptidase from Streptococcus sanguis (Q59986 from SWISSPROT).; GO: 0004222 metalloendopeptidase activity, 0008270 zinc ion binding, 0016021 integral to membrane
Probab=34.24 E-value=26 Score=31.35 Aligned_cols=12 Identities=17% Similarity=0.515 Sum_probs=7.9
Q ss_pred cCcEEEEEe-EEe
Q 047322 64 PRGLFLVKS-ISF 75 (343)
Q Consensus 64 p~G~Y~~~~-l~l 75 (343)
|.|+|.++. +..
T Consensus 154 p~Gty~LgadldA 166 (250)
T PF05342_consen 154 PSGTYKLGADLDA 166 (250)
T ss_pred CCceEEECCccch
Confidence 677887765 444
No 140
>COG5510 Predicted small secreted protein [Function unknown]
Probab=34.06 E-value=79 Score=20.04 Aligned_cols=12 Identities=25% Similarity=0.028 Sum_probs=5.1
Q ss_pred chHHHHHHHHHH
Q 047322 40 DATQAFLRAWSS 51 (343)
Q Consensus 40 Ddt~Aiq~Ai~~ 51 (343)
-|-+.--+||.+
T Consensus 30 ~DIq~~G~al~~ 41 (44)
T COG5510 30 KDIQSGGKALSD 41 (44)
T ss_pred hhHHHHHHHHHh
Confidence 344444444443
No 141
>TIGR02791 VirB5 P-type DNA transfer protein VirB5. The VirB5 protein is involved in the type IV DNA secretion systems typified by the Agrobacterium Ti plasmid vir system where it interacts with several other proteins essential for proper pilus formation. VirB5 is homologous to the IncN (N-type) conjugation system protein TraC as well as the P-type protein TrbJ and the F-type protein TraE.
Probab=33.30 E-value=53 Score=28.84 Aligned_cols=16 Identities=38% Similarity=0.513 Sum_probs=10.8
Q ss_pred CchhhHHHHHHHHHhh
Q 047322 1 MAKLAVSCTLFIFFIN 16 (343)
Q Consensus 1 m~~~~~~~~~~~~~~~ 16 (343)
|||.++.+++++++.+
T Consensus 1 mk~~~~~~~~~~~l~~ 16 (220)
T TIGR02791 1 MKKHAISCALTAALAA 16 (220)
T ss_pred CchhHHHHHHHHHHhc
Confidence 8888777766655443
No 142
>PRK11627 hypothetical protein; Provisional
Probab=33.11 E-value=46 Score=28.65 Aligned_cols=22 Identities=14% Similarity=0.123 Sum_probs=10.4
Q ss_pred CchhhHHHHHHHHHhhhccccC
Q 047322 1 MAKLAVSCTLFIFFINTLFQSA 22 (343)
Q Consensus 1 m~~~~~~~~~~~~~~~~~~~~~ 22 (343)
|.|.+++.+++.++.++|++.+
T Consensus 1 mlkklll~l~a~~~L~gCA~~p 22 (192)
T PRK11627 1 MLKKILFPLVALFMLAGCATPS 22 (192)
T ss_pred ChHHHHHHHHHHHHHHhhcCCC
Confidence 6666654444333344454443
No 143
>PF03032 Brevenin: Brevenin/esculentin/gaegurin/rugosin family; InterPro: IPR004275 In addition to the highly specific cell-mediated immune system, vertebrates possess an efficient host-defence mechanism against invading microorganisms which involves the synthesis of highly potent antimicrobial peptides with a large spectrum of activity. This entry represents a number of these defence peptides secreted from the skin of amphibians, including the opiate-like dermorphins and deltorphins, and the antimicrobial dermoseptins and temporins.; GO: 0006952 defense response, 0042742 defense response to bacterium, 0005576 extracellular region
Probab=32.97 E-value=27 Score=22.51 Aligned_cols=18 Identities=11% Similarity=-0.048 Sum_probs=10.2
Q ss_pred CchhhHHHHHHHHHhhhc
Q 047322 1 MAKLAVSCTLFIFFINTL 18 (343)
Q Consensus 1 m~~~~~~~~~~~~~~~~~ 18 (343)
|||.+++|.++..+.+..
T Consensus 3 lKKsllLlfflG~ISlSl 20 (46)
T PF03032_consen 3 LKKSLLLLFFLGTISLSL 20 (46)
T ss_pred chHHHHHHHHHHHcccch
Confidence 677766655555444433
No 144
>PLN02497 probable pectinesterase
Probab=32.58 E-value=4.3e+02 Score=24.87 Aligned_cols=54 Identities=7% Similarity=-0.030 Sum_probs=28.8
Q ss_pred ecCcEEEEeeEEecCCccEEEEeceecEEEEeEEEECCCCCCCCCeeee-eCcccEEEEccEEec
Q 047322 150 GASNIVVSGLTSINSRFFHIAIDECVNIMLRKLKINAPSWSPNTDGIHI-QSSSGITISNSAIMT 213 (343)
Q Consensus 150 ~~~nv~i~~v~i~n~~~~~i~~~~~~~v~i~~~~i~~~~~~~~~DGi~~-~~s~nv~I~n~~i~~ 213 (343)
..+...+.+++|... ++.+.. +...--+++|.|+.. +++ .+.-..++++|.|..
T Consensus 148 ~gDr~~fy~C~f~G~-QDTLy~-~~gRqyf~~C~IeG~--------VDFIFG~g~a~Fe~C~I~s 202 (331)
T PLN02497 148 GGDKSAFYSCGFAGV-QDTLWD-SDGRHYFKRCTIQGA--------VDFIFGSGQSIYESCVIQV 202 (331)
T ss_pred cCCcEEEEeeEEecc-ccceee-CCCcEEEEeCEEEec--------ccEEccCceEEEEccEEEE
Confidence 456666777766543 333332 233456666777653 222 233456666776654
No 145
>PRK09408 ompX outer membrane protein X; Provisional
Probab=31.54 E-value=38 Score=28.57 Aligned_cols=10 Identities=40% Similarity=0.497 Sum_probs=7.3
Q ss_pred CchhhHHHHH
Q 047322 1 MAKLAVSCTL 10 (343)
Q Consensus 1 m~~~~~~~~~ 10 (343)
|||++++.++
T Consensus 1 mkk~~~~~~~ 10 (171)
T PRK09408 1 MKKIACLSAL 10 (171)
T ss_pred CceEehHHHH
Confidence 8998865555
No 146
>PF15284 PAGK: Phage-encoded virulence factor
Probab=30.86 E-value=40 Score=22.99 Aligned_cols=16 Identities=19% Similarity=0.295 Sum_probs=7.8
Q ss_pred Cchhh-HHHHHHHHHhh
Q 047322 1 MAKLA-VSCTLFIFFIN 16 (343)
Q Consensus 1 m~~~~-~~~~~~~~~~~ 16 (343)
|||+. .+|+|++.|.+
T Consensus 1 Mkk~ksifL~l~~~LsA 17 (61)
T PF15284_consen 1 MKKFKSIFLALVFILSA 17 (61)
T ss_pred ChHHHHHHHHHHHHHHH
Confidence 77765 34444443333
No 147
>PF10731 Anophelin: Thrombin inhibitor from mosquito; InterPro: IPR018932 Members of this family are all inhibitors of thrombin, the peptidase that is at the end of the blood coagulation cascade and which creates the clot by cleaving fibrinogen. The interaction between thrombin and fibrinogen involves two different areas of contact - via the thrombin active site and via a second substrate-binding site known as an exosite. The inhibitor acts by blocking the exosite, rather than by interacting with the active site. The inhibitors are from mosquitoes that feed on human blood and which, by inhibiting thrombin, prevent the blood from clotting and keep it flowing.
Probab=30.48 E-value=42 Score=22.78 Aligned_cols=12 Identities=25% Similarity=0.279 Sum_probs=5.4
Q ss_pred CchhhHHHHHHH
Q 047322 1 MAKLAVSCTLFI 12 (343)
Q Consensus 1 m~~~~~~~~~~~ 12 (343)
|...+++++|+|
T Consensus 1 MA~Kl~vialLC 12 (65)
T PF10731_consen 1 MASKLIVIALLC 12 (65)
T ss_pred CcchhhHHHHHH
Confidence 555454444433
No 148
>PF11777 DUF3316: Protein of unknown function (DUF3316); InterPro: IPR016879 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=30.37 E-value=38 Score=26.34 Aligned_cols=13 Identities=23% Similarity=0.554 Sum_probs=8.0
Q ss_pred CchhhHHHHHHHH
Q 047322 1 MAKLAVSCTLFIF 13 (343)
Q Consensus 1 m~~~~~~~~~~~~ 13 (343)
|||++++++++++
T Consensus 1 MKk~~ll~~~ll~ 13 (114)
T PF11777_consen 1 MKKIILLASLLLL 13 (114)
T ss_pred CchHHHHHHHHHH
Confidence 8887766644333
No 149
>COG4704 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=30.27 E-value=1.4e+02 Score=24.05 Aligned_cols=37 Identities=19% Similarity=0.151 Sum_probs=20.0
Q ss_pred cchHHHHHHHHHHhhhcC-CCcEEEEcCcEEEEEeEEe
Q 047322 39 SDATQAFLRAWSSACYSN-SPATLHVPRGLFLVKSISF 75 (343)
Q Consensus 39 tDdt~Aiq~Ai~~a~~~~-~g~~V~ip~G~Y~~~~l~l 75 (343)
-+|...||+|=-...... .-.-.=+|||+|-+..+.-
T Consensus 59 ~~~~~~f~ractsit~dpv~~~f~~Lk~G~YAvaa~qD 96 (151)
T COG4704 59 MSDPSRFQRACTSITGDPVSKSFYGLKPGKYAVAAFQD 96 (151)
T ss_pred CCCchHHhhhcccccCCchhheeecCCCccEEEEEEEe
Confidence 477888888732211111 1111226999998876543
No 150
>TIGR00156 conserved hypothetical protein TIGR00156. As of the last revision, this family consists only of two proteins from Escherichia coli and one from the related species Haemophilus influenzae.
Probab=29.86 E-value=36 Score=27.15 Aligned_cols=13 Identities=15% Similarity=0.031 Sum_probs=8.3
Q ss_pred CchhhHHHHHHHH
Q 047322 1 MAKLAVSCTLFIF 13 (343)
Q Consensus 1 m~~~~~~~~~~~~ 13 (343)
|||+++.++++++
T Consensus 1 MKK~~~~~~~~l~ 13 (126)
T TIGR00156 1 MKFQAIVLASALV 13 (126)
T ss_pred CchHHHHHHHHHH
Confidence 8987765555443
No 151
>PF13605 DUF4141: Domain of unknown function (DUF4141)
Probab=29.05 E-value=35 Score=22.92 Aligned_cols=14 Identities=14% Similarity=0.159 Sum_probs=9.2
Q ss_pred eEEEeecCccCCCC
Q 047322 25 AYNVINFGAKPDGK 38 (343)
Q Consensus 25 ~~~v~d~GA~gdg~ 38 (343)
-.-|.|-|-...+.
T Consensus 21 QWvV~DP~NlAQ~I 34 (55)
T PF13605_consen 21 QWVVTDPGNLAQNI 34 (55)
T ss_pred EEEEeCchHHHHHH
Confidence 57888887555444
No 152
>PRK10780 periplasmic chaperone; Provisional
Probab=28.86 E-value=41 Score=28.03 Aligned_cols=15 Identities=20% Similarity=0.180 Sum_probs=9.3
Q ss_pred CchhhHHHHHHHHHh
Q 047322 1 MAKLAVSCTLFIFFI 15 (343)
Q Consensus 1 m~~~~~~~~~~~~~~ 15 (343)
|+|++..++|++++.
T Consensus 1 Mkk~~~~~~l~l~~~ 15 (165)
T PRK10780 1 MKKWLLAAGLGLALA 15 (165)
T ss_pred ChHHHHHHHHHHHHH
Confidence 888886555544433
No 153
>COG3054 Predicted transcriptional regulator [General function prediction only]
Probab=28.09 E-value=40 Score=27.71 Aligned_cols=14 Identities=14% Similarity=0.264 Sum_probs=9.3
Q ss_pred EEcCcEEEEEeEEe
Q 047322 62 HVPRGLFLVKSISF 75 (343)
Q Consensus 62 ~ip~G~Y~~~~l~l 75 (343)
-||+-.|...++.-
T Consensus 88 ~fp~~~YQTTTIiN 101 (184)
T COG3054 88 KFPHDRYQTTTIIN 101 (184)
T ss_pred cCChHHceeeEEec
Confidence 57788887666543
No 154
>PF12276 DUF3617: Protein of unknown function (DUF3617); InterPro: IPR022061 This family of proteins is found in bacteria. Proteins in this family are typically between 155 and 179 amino acids in length. There is a single completely conserved residue C that may be functionally important.
Probab=27.77 E-value=46 Score=27.35 Aligned_cols=15 Identities=7% Similarity=0.120 Sum_probs=9.3
Q ss_pred CchhhHHHHHHHHHh
Q 047322 1 MAKLAVSCTLFIFFI 15 (343)
Q Consensus 1 m~~~~~~~~~~~~~~ 15 (343)
|+|+++.++++++++
T Consensus 1 M~~~~~~~~~~~~~~ 15 (162)
T PF12276_consen 1 MKRRLLLALALALLA 15 (162)
T ss_pred CchHHHHHHHHHHHH
Confidence 778776666555443
No 155
>PF12393 Dr_adhesin: Dr family adhesin ; InterPro: IPR021020 The Dr family of adhesins bind to the Dr blood group antigen component of decay-accelerating factor. These proteins contain both fimbriated and afimbriated adherence structures and mediate adherence of uropathogenic Escherichia coli to the urinary tract []. They also confer the mannose-resistant hemagglutination phenotype, which can be inhibited by chloramphenicol. The N-terminal portion of the mature protein is thought to be responsible for chloramphenicol sensitivity []. This entry represents the signal peptide region necessary for protein secretion to the cell surface.
Probab=27.64 E-value=78 Score=16.67 Aligned_cols=16 Identities=25% Similarity=0.235 Sum_probs=9.0
Q ss_pred CchhhHHHHHHHHHhh
Q 047322 1 MAKLAVSCTLFIFFIN 16 (343)
Q Consensus 1 m~~~~~~~~~~~~~~~ 16 (343)
|||+.+--+..+.++.
T Consensus 1 MKklaiMaa~s~~~~v 16 (21)
T PF12393_consen 1 MKKLAIMAAASMMTAV 16 (21)
T ss_pred CchHHHHHHHHHHHHh
Confidence 7777665555444443
No 156
>PRK13301 putative L-aspartate dehydrogenase; Provisional
Probab=27.53 E-value=77 Score=28.77 Aligned_cols=38 Identities=24% Similarity=0.256 Sum_probs=28.5
Q ss_pred CceEEEeecCccCCCCcchHHHHHHHHHHhhhcCCCcEEEEcCcE
Q 047322 23 SAAYNVINFGAKPDGKSDATQAFLRAWSSACYSNSPATLHVPRGL 67 (343)
Q Consensus 23 ~~~~~v~d~GA~gdg~tDdt~Aiq~Ai~~a~~~~~g~~V~ip~G~ 67 (343)
...+-|..-||..| +++.+.|.++|+ .+|..||+|.|-
T Consensus 86 g~dlvv~SvGALaD------~~~~~~l~~~A~-~~g~~i~ipSGA 123 (267)
T PRK13301 86 GLDMIICSAGALAD------DALRARLIAAAE-AGGARIRVPAGA 123 (267)
T ss_pred CCCEEEEChhHhcC------HHHHHHHHHHHH-hCCCEEEEeChH
Confidence 44677778888887 567777766544 478899999996
No 157
>TIGR03656 IsdC heme uptake protein IsdC. Isd proteins are iron-regulated surface proteins found in Bacillus, Staphylococcus and Listeria species and are responsible for heme scavenging from hemoproteins. The IsdC protein consists of an N-terminal hydrophobic signal sequence, a central NEAT (NEAr Transporter, pfam05031) domain which confers the ability to bind heme and a C-terminal SrtB processing signal which targets the protein to the cell wall. IsdC is believed to make a direct contact with, and transfer heme to, the heme-binding component (IsdE) of an ABC transporter in the cytoplasmic membrane, and to receive heme from other NEAT-containing heme-binding proteins also localized in the cell wall.
Probab=27.43 E-value=1.7e+02 Score=25.75 Aligned_cols=26 Identities=27% Similarity=0.336 Sum_probs=17.4
Q ss_pred cchHHHHHHHHHHhhhcCCCcEEEEcCcEEEE
Q 047322 39 SDATQAFLRAWSSACYSNSPATLHVPRGLFLV 70 (343)
Q Consensus 39 tDdt~Aiq~Ai~~a~~~~~g~~V~ip~G~Y~~ 70 (343)
+|++.-....++ ..++|.+-.|.|.+
T Consensus 45 tde~Smmn~Y~~------kPAkv~VknGK~~V 70 (217)
T TIGR03656 45 NDSASMANDYFE------KPAKLIVKNGKMTV 70 (217)
T ss_pred CCchhhHHhhcc------CCcEEEEECCEEEE
Confidence 466566666653 35678889998654
No 158
>smart00722 CASH Domain present in carbohydrate binding proteins and sugar hydrolses.
Probab=27.20 E-value=2.9e+02 Score=21.26 Aligned_cols=59 Identities=14% Similarity=0.036 Sum_probs=26.4
Q ss_pred cCcEEEEeeEEecC--Cc-------cEEEEeceecEEEEeEEEECCCCCCCCCeeeeeCcccEEEEccEE
Q 047322 151 ASNIVVSGLTSINS--RF-------FHIAIDECVNIMLRKLKINAPSWSPNTDGIHIQSSSGITISNSAI 211 (343)
Q Consensus 151 ~~nv~i~~v~i~n~--~~-------~~i~~~~~~~v~i~~~~i~~~~~~~~~DGi~~~~s~nv~I~n~~i 211 (343)
.+++.++++.+.++ .. .++. ..+.+..+++..+....- .+..|+++..+.+..+.++.+
T Consensus 44 ~~~~~~~G~~~~~~~~~G~~~~~~~~~~~-~~~~~~~i~~N~~~~~~~-~~~~Gi~~~~~~~~~~~~N~i 111 (146)
T smart00722 44 SNDVRVDGITIGGSTVTGIYVSASGDGVI-QNTGKNLIIDNVTINGTE-GSGAGIVVTAGSEGLFIGNRI 111 (146)
T ss_pred CCCCEEECeEEEeEEeeCcccccCCceEe-cCccccEEEcceecCCCc-cceEEEEEECCccceEecCeE
Confidence 44556666666652 11 1111 233445555555544210 124566665544444444444
No 159
>PF10162 G8: G8 domain; InterPro: IPR019316 This entry represents a domain found in disease proteins PKHD1 and KIAA1199 and is named G8 after its 8 conserved glycines. It is predicted to contain 10 beta strands and an alpha helix [].
Probab=26.21 E-value=2e+02 Score=22.68 Aligned_cols=54 Identities=19% Similarity=0.278 Sum_probs=31.7
Q ss_pred CCcEEEEcCcEEEEEeEEecCCCcccEEEEEeeEEEecCCcCCcCCCcceEEEEeeeeEEEEc-ceEe
Q 047322 57 SPATLHVPRGLFLVKSISFNGPCRHRIVFQIDGTIIAPSSYWSLGNSGFWILFYKVNRLSIHG-GTID 123 (343)
Q Consensus 57 ~g~~V~ip~G~Y~~~~l~l~~~~ks~~~l~~~g~l~~~~~~~~~~~~~~~i~~~~~~ni~I~G-G~id 123 (343)
.+..|+||+|...+-.... ..--.|.++|+|.+..+ ++ +.+. ++.|.|.| |.+.
T Consensus 11 ~g~~V~I~~g~~v~lD~~~----~~l~~l~I~G~L~f~~~-~~-------~~L~-a~~I~V~~Gg~l~ 65 (125)
T PF10162_consen 11 AGDNVVIPAGQTVLLDVST----PKLGSLIIGGTLIFDDD-RD-------ITLR-AEYILVEGGGRLI 65 (125)
T ss_pred CCCEEEECCCCEEEEcCCC----hheeEEEEEEEEEEccC-CC-------CEEE-EEEEEECCCCeEE
Confidence 4678999999865432211 01234555899988654 22 1222 67888888 4543
No 160
>COG2247 LytB Putative cell wall-binding domain [Cell envelope biogenesis, outer membrane]
Probab=26.13 E-value=80 Score=29.39 Aligned_cols=29 Identities=21% Similarity=0.227 Sum_probs=17.5
Q ss_pred CCCCcchHHHHHHHHHHhhhcCCCcEEEEcC-cEEE
Q 047322 35 PDGKSDATQAFLRAWSSACYSNSPATLHVPR-GLFL 69 (343)
Q Consensus 35 gdg~tDdt~Aiq~Ai~~a~~~~~g~~V~ip~-G~Y~ 69 (343)
+|.-.|-+.|+-=| ++ -..+|+.-| |.|.
T Consensus 35 sDn~aD~~lA~~ia--el----lNA~Vlttpwg~yn 64 (337)
T COG2247 35 SDNEADLLLALPIA--EL----LNAPVLTTPWGIYN 64 (337)
T ss_pred cchHHHHHHhhHHH--HH----hCCeeEecCccccc
Confidence 56667777776544 11 123566877 9885
No 161
>COG4588 AcfC Accessory colonization factor AcfC, contains ABC-type periplasmic domain [General function prediction only]
Probab=25.32 E-value=1.9e+02 Score=25.24 Aligned_cols=55 Identities=15% Similarity=0.171 Sum_probs=26.2
Q ss_pred CchhhHHHHHHHHHhhhccccCCceEEEeecCccCCCCcchHHHHHHHHHHhhhcCCCcEEEEcCc
Q 047322 1 MAKLAVSCTLFIFFINTLFQSASAAYNVINFGAKPDGKSDATQAFLRAWSSACYSNSPATLHVPRG 66 (343)
Q Consensus 1 m~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~GA~gdg~tDdt~Aiq~Ai~~a~~~~~g~~V~ip~G 66 (343)
||+..++|+.+++ +..+++.+ +|.-||+-|- + .||.++-+.- .+..|..|.+-.|
T Consensus 1 Mk~~~~i~~~~~L-a~s~~~~a----dinlYGpGGP----h-taL~~vA~~~-~ektg~kVnvt~G 55 (252)
T COG4588 1 MKKAVLILLIFLL-AFSSAANA----DINLYGPGGP----H-TALKDVAKKY-EEKTGIKVNVTAG 55 (252)
T ss_pred CchhHHHHHHHHH-Hhhhhhcc----eEEEecCCCC----c-HHHHHHHHHH-HHHhCeEEEEecC
Confidence 7775554444332 22223333 6777986433 2 3444432222 2345666776444
No 162
>PRK15209 long polar fimbrial protein LpfA; Provisional
Probab=24.88 E-value=66 Score=26.87 Aligned_cols=12 Identities=17% Similarity=0.285 Sum_probs=7.8
Q ss_pred CchhhHHHHHHH
Q 047322 1 MAKLAVSCTLFI 12 (343)
Q Consensus 1 m~~~~~~~~~~~ 12 (343)
|||.++.++++.
T Consensus 1 Mkk~~~~~~~~~ 12 (174)
T PRK15209 1 MKKVVFALSALA 12 (174)
T ss_pred CchHHHHHHHHH
Confidence 899776555443
No 163
>PRK13912 nuclease NucT; Provisional
Probab=23.99 E-value=1.5e+02 Score=24.78 Aligned_cols=57 Identities=14% Similarity=0.174 Sum_probs=34.6
Q ss_pred CchhhHHHHHHHHHhhhccccCCceEEEeecCccCCCCcchHHHHHHHHHHhhhcCCCcEEEEcCcEEEEEe
Q 047322 1 MAKLAVSCTLFIFFINTLFQSASAAYNVINFGAKPDGKSDATQAFLRAWSSACYSNSPATLHVPRGLFLVKS 72 (343)
Q Consensus 1 m~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~GA~gdg~tDdt~Aiq~Ai~~a~~~~~g~~V~ip~G~Y~~~~ 72 (343)
|+|....++|..||..+.+... +.+.-+ +..+..+++.++|+.| + ..|++- .|.+..
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~---~~~~P~-----~~~~~~~~l~~~I~~A-k----~sI~i~--~Y~~~~ 58 (177)
T PRK13912 2 MKKIVGVFLLVGCLGVLQAKSS---LYFLPY-----EQKDALNKLVSLISNA-R----SSIKIA--IYSFTH 58 (177)
T ss_pred hhhHHHHHHHHHhhhhhhccce---EEECCC-----ChHHHHHHHHHHHHhc-c----cEEEEE--EEEEch
Confidence 7888888888777766444333 333333 2235567889999765 2 357774 576543
No 164
>TIGR01626 ytfJ_HI0045 conserved hypothetical protein YtfJ-family, TIGR01626. This model represents sequences from gamma proteobacteria that are related to the E. coli protein, YtfJ.
Probab=23.99 E-value=68 Score=27.38 Aligned_cols=9 Identities=22% Similarity=0.553 Sum_probs=5.3
Q ss_pred ceEEEeecC
Q 047322 24 AAYNVINFG 32 (343)
Q Consensus 24 ~~~~v~d~G 32 (343)
+.+.|.|+|
T Consensus 30 p~v~~~~~g 38 (184)
T TIGR01626 30 PSVGVSEYG 38 (184)
T ss_pred CceEecCCc
Confidence 355666665
No 165
>PF02373 JmjC: JmjC domain, hydroxylase; InterPro: IPR013129 Jumonji protein is required for neural tube formation in mice [].There is evidence of domain swapping within the jumonji family of transcription factors []. This domain is often associated with jmjN (see IPR003349 from INTERPRO) and belongs to the Cupin superfamily [].; PDB: 2YU2_A 2YU1_A 3AVR_A 3AVS_A 2OX0_B 2OQ6_B 2WWJ_A 2Q8D_A 3PDQ_A 2YBK_A ....
Probab=23.89 E-value=54 Score=24.78 Aligned_cols=15 Identities=13% Similarity=0.357 Sum_probs=10.1
Q ss_pred CCCcEEEEcCcEEEE
Q 047322 56 NSPATLHVPRGLFLV 70 (343)
Q Consensus 56 ~~g~~V~ip~G~Y~~ 70 (343)
..|..|++|||+|+.
T Consensus 86 ~~Ge~V~i~pg~~H~ 100 (114)
T PF02373_consen 86 KPGEFVFIPPGAYHQ 100 (114)
T ss_dssp ETT-EEEE-TT-EEE
T ss_pred CCCCEEEECCCceEE
Confidence 578999999999974
No 166
>PF08194 DIM: DIM protein; InterPro: IPR013172 Drosophila immune-induced molecules (DIMs) are short proteins induced during the immune response of Drosophila []. This entry includes DIMs 1 to 4 and DIM23.
Probab=23.51 E-value=1.4e+02 Score=18.19 Aligned_cols=6 Identities=33% Similarity=0.445 Sum_probs=2.7
Q ss_pred CchhhH
Q 047322 1 MAKLAV 6 (343)
Q Consensus 1 m~~~~~ 6 (343)
||-+-+
T Consensus 1 Mk~l~~ 6 (36)
T PF08194_consen 1 MKCLSL 6 (36)
T ss_pred CceeHH
Confidence 554433
No 167
>PF10614 CsgF: Type VIII secretion system (T8SS), CsgF protein; InterPro: IPR018893 Fimbriae are cell-surface protein polymers, of e.g. Escherichia coli and Salmonella spp, that mediate interactions important for host and environmental persistence, development of biofilms, motility, colonisation and invasion of cells, and conjugation. Four general assembly pathways for different fimbriae have been proposed, one of which is extracellular nucleation-precipitation (ENP), that differs from the others in that fibre-growth occurs extracellularly. Thin aggregative fimbriae (Tafi) are the only fimbriae dependent on the ENP pathway. Tafi were first identified in Salmonella spp. and the controlling operon termed agf; however subsequent isolation of the homologous operon in E. coli led to its being called csg. Tafi are known as curli because, in the absence of extracellular polysaccharides, their morphology appears curled; however, when expressed with such polysaccharides their morphology appears as a tangled amorphous matrix []. CsgF is one of three putative curli assembly factors appearing to act as a nucleator protein. Unlike eukaryotic amyloid formation, curli biogenesis is a productive pathway requiring a specific assembly machinery [].
Probab=23.46 E-value=68 Score=26.12 Aligned_cols=13 Identities=15% Similarity=0.281 Sum_probs=8.8
Q ss_pred EcCcEEEEEeEEe
Q 047322 63 VPRGLFLVKSISF 75 (343)
Q Consensus 63 ip~G~Y~~~~l~l 75 (343)
..+|+|..+...+
T Consensus 99 ~~~Gt~~~gdf~I 111 (142)
T PF10614_consen 99 QKPGTFTTGDFTI 111 (142)
T ss_pred CCCceEEECCEEE
Confidence 3678888776444
No 168
>PRK10833 putative assembly protein; Provisional
Probab=23.45 E-value=79 Score=32.39 Aligned_cols=49 Identities=10% Similarity=0.166 Sum_probs=28.2
Q ss_pred CchhhHHHHHHHHHhhhccccCCceEEEeecCccCCCCcchHHHHHHHHHHhhhcCCCcEEEE
Q 047322 1 MAKLAVSCTLFIFFINTLFQSASAAYNVINFGAKPDGKSDATQAFLRAWSSACYSNSPATLHV 63 (343)
Q Consensus 1 m~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~GA~gdg~tDdt~Aiq~Ai~~a~~~~~g~~V~i 63 (343)
|||++++++.++.++.+..++-...++..+|- +.|.+++.+ ..|..|.|
T Consensus 1 mkrll~~l~~l~~l~v~~~~al~~~id~n~~k----------~~i~~~v~~----~tGr~l~I 49 (617)
T PRK10833 1 MRRFLTTLMILLVVLVAGLSALVLLVNPNDFR----------AYMVKQVEA----RSGYQLQL 49 (617)
T ss_pred CcchHHHHHHHHHHHHHHHHHheEEEChHHhh----------HHHHHHHHH----HhCCEEEE
Confidence 88988766665555543444333455555553 456666544 35667777
No 169
>COG4939 Major membrane immunogen, membrane-anchored lipoprotein [Function unknown]
Probab=22.96 E-value=2.7e+02 Score=22.16 Aligned_cols=32 Identities=25% Similarity=0.405 Sum_probs=20.3
Q ss_pred EEEcCcEEEEEeEEe--cCCCcccEEEEEe-eEEEe
Q 047322 61 LHVPRGLFLVKSISF--NGPCRHRIVFQID-GTIIA 93 (343)
Q Consensus 61 V~ip~G~Y~~~~l~l--~~~~ks~~~l~~~-g~l~~ 93 (343)
-.||.|+|...--.+ .|. |..+++.+. |.+..
T Consensus 27 ~t~~dGtY~~~y~~fDd~gw-k~f~~iti~dGKiv~ 61 (147)
T COG4939 27 MTFNDGTYQGHYESFDDHGW-KAFVTITIQDGKIVA 61 (147)
T ss_pred ccccCCceeeeeccccccCc-cceEEEEEeCCEEEE
Confidence 468999998543222 344 567888777 65543
No 170
>COG5455 Predicted integral membrane protein [Function unknown]
Probab=22.56 E-value=67 Score=25.50 Aligned_cols=19 Identities=21% Similarity=0.065 Sum_probs=8.9
Q ss_pred CchhhHHHHHHHHHhhhcc
Q 047322 1 MAKLAVSCTLFIFFINTLF 19 (343)
Q Consensus 1 m~~~~~~~~~~~~~~~~~~ 19 (343)
|||.+++.+++..+++++.
T Consensus 1 ~mkrlv~~lla~s~~a~p~ 19 (129)
T COG5455 1 NMKRLVSALLAVSSVAAPM 19 (129)
T ss_pred CchhHHHHHHHHHHhhcch
Confidence 4555555545444444333
No 171
>PF10913 DUF2706: Protein of unknown function (DUF2706); InterPro: IPR024444 This family of proteins with unknown function appears to be restricted to Rickettsia spp.
Probab=22.26 E-value=95 Score=20.42 Aligned_cols=7 Identities=29% Similarity=-0.069 Sum_probs=3.8
Q ss_pred CchhhHH
Q 047322 1 MAKLAVS 7 (343)
Q Consensus 1 m~~~~~~ 7 (343)
|.|.+-+
T Consensus 1 mlk~lkf 7 (60)
T PF10913_consen 1 MLKSLKF 7 (60)
T ss_pred ChhHHHH
Confidence 6665533
No 172
>PF14060 DUF4252: Domain of unknown function (DUF4252)
Probab=22.07 E-value=1.4e+02 Score=24.23 Aligned_cols=15 Identities=13% Similarity=0.228 Sum_probs=6.8
Q ss_pred chhhHHHHHHHHHhh
Q 047322 2 AKLAVSCTLFIFFIN 16 (343)
Q Consensus 2 ~~~~~~~~~~~~~~~ 16 (343)
||++++++|+++..+
T Consensus 1 Kk~i~~l~l~~~~~~ 15 (155)
T PF14060_consen 1 KKIILILLLLLACLA 15 (155)
T ss_pred ChhHHHHHHHHHHHH
Confidence 355554444443333
No 173
>COG1030 NfeD Membrane-bound serine protease (ClpP class) [Posttranslational modification, protein turnover, chaperones]
Probab=21.86 E-value=2.2e+02 Score=27.83 Aligned_cols=27 Identities=26% Similarity=0.199 Sum_probs=14.3
Q ss_pred CceEEEeecCccCCCCcchHHHHHHHHHHh
Q 047322 23 SAAYNVINFGAKPDGKSDATQAFLRAWSSA 52 (343)
Q Consensus 23 ~~~~~v~d~GA~gdg~tDdt~Aiq~Ai~~a 52 (343)
+.++.+.==|+...+.. .-+|++|+.|
T Consensus 26 ~~v~vi~i~g~I~~~s~---~~l~r~l~~A 52 (436)
T COG1030 26 KKVYVIEIDGAIDPASA---DYLQRALQSA 52 (436)
T ss_pred CeEEEEEecCccCHHHH---HHHHHHHHHH
Confidence 34555544566655433 3466666554
No 174
>PF12099 DUF3575: Protein of unknown function (DUF3575); InterPro: IPR021958 This family of proteins are functionally uncharacterised. This family is only found in bacteria. Proteins in this family are typically between 187 to 236 amino acids in length.
Probab=21.77 E-value=91 Score=26.69 Aligned_cols=16 Identities=25% Similarity=0.538 Sum_probs=9.7
Q ss_pred CchhhHHHHHHHHHhh
Q 047322 1 MAKLAVSCTLFIFFIN 16 (343)
Q Consensus 1 m~~~~~~~~~~~~~~~ 16 (343)
|||..+++++++++..
T Consensus 1 ~~~~~~~~~~~~~~~~ 16 (189)
T PF12099_consen 1 MKKIRILFLLLLLFCS 16 (189)
T ss_pred CceehHHHHHHHHHHH
Confidence 8887765555544443
No 175
>PRK15346 outer membrane secretin SsaC; Provisional
Probab=20.92 E-value=1.2e+02 Score=30.36 Aligned_cols=22 Identities=14% Similarity=0.078 Sum_probs=11.3
Q ss_pred Cchhh-HHHHHHHHHhhhccccC
Q 047322 1 MAKLA-VSCTLFIFFINTLFQSA 22 (343)
Q Consensus 1 m~~~~-~~~~~~~~~~~~~~~~~ 22 (343)
|||++ +.|++++|.+.+.++++
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~ 23 (499)
T PRK15346 1 MKKLLILIFLFLLNTAKFAASKS 23 (499)
T ss_pred CchhHHHHHHHHHhhhhhhccCC
Confidence 67765 44444555444444444
No 176
>PRK15324 type III secretion system lipoprotein PrgK; Provisional
Probab=20.84 E-value=1.6e+02 Score=26.49 Aligned_cols=32 Identities=6% Similarity=0.073 Sum_probs=21.5
Q ss_pred CcchHHHHHHHHHHhh---hc--CC--CcEEEEcCcEEE
Q 047322 38 KSDATQAFLRAWSSAC---YS--NS--PATLHVPRGLFL 69 (343)
Q Consensus 38 ~tDdt~Aiq~Ai~~a~---~~--~~--g~~V~ip~G~Y~ 69 (343)
...|..+|.++|++.- +. .+ |.+|++|++.+.
T Consensus 28 ~~~dAneIv~~L~~~gI~y~~~~~gk~G~tI~V~~~d~~ 66 (252)
T PRK15324 28 DQEQANEVIAVLQMHNIEANKIDSGKLGYSITVAEPDFT 66 (252)
T ss_pred CHHHHHHHHHHHHHCCCCeEeccCCCCceEEEEcHHHHH
Confidence 4588889999997651 11 11 457888888754
No 177
>PF10855 DUF2648: Protein of unknown function (DUF2648); InterPro: IPR022561 This family of proteins with unknown function appears to be restricted to eubacteia.
Probab=20.48 E-value=50 Score=19.38 Aligned_cols=13 Identities=38% Similarity=0.122 Sum_probs=8.6
Q ss_pred CchhhHHHHHHHH
Q 047322 1 MAKLAVSCTLFIF 13 (343)
Q Consensus 1 m~~~~~~~~~~~~ 13 (343)
|||+++.|++...
T Consensus 1 MKkl~i~L~l~ga 13 (33)
T PF10855_consen 1 MKKLAIILILGGA 13 (33)
T ss_pred CCceeehhhhhhH
Confidence 8888776666443
No 178
>PRK09934 fimbrial-like adhesin protein SfmF; Provisional
Probab=20.22 E-value=87 Score=26.14 Aligned_cols=15 Identities=13% Similarity=0.363 Sum_probs=8.8
Q ss_pred CchhhHHHHHHHHHh
Q 047322 1 MAKLAVSCTLFIFFI 15 (343)
Q Consensus 1 m~~~~~~~~~~~~~~ 15 (343)
|+|+++.+++++++.
T Consensus 1 m~~~~~~~~~~~~~~ 15 (171)
T PRK09934 1 MRRVFFACFCGLLWS 15 (171)
T ss_pred ChhHHHHHHHHHhhC
Confidence 888776554444433
No 179
>cd08667 APC10-ZZEF1 APC10/DOC1-like domain of uncharacterized Zinc finger ZZ-type and EF-hand domain-containing protein 1 (ZZEF1) and homologs. This model represents the APC10/DOC1-like domain present in the uncharacterized Zinc finger ZZ-type and EF-hand domain-containing protein 1 (ZZEF1) of Mus musculus. Members of this family contain EF-hand, APC10, CUB, and zinc finger ZZ-type domains. ZZEF1-like APC10 domains are homologous to the APC10 subunit/DOC1 domains present in E3 ubiquitin ligases, which mediate substrate ubiquitination (or ubiquitylation), and are components of the ubiquitin-26S proteasome pathway for selective proteolytic degradation.
Probab=20.01 E-value=2.1e+02 Score=22.94 Aligned_cols=37 Identities=16% Similarity=0.310 Sum_probs=28.5
Q ss_pred eEeCCCCccccccCCCCCCCCCceEEEEEecCcEEEEeeEEe
Q 047322 121 TIDATGAGYWACRKSGKSCPPPTRSISFVGASNIVVSGLTSI 162 (343)
Q Consensus 121 ~idg~g~~~w~~~~~~~~~~~~~~~i~~~~~~nv~i~~v~i~ 162 (343)
.+|++...||...+ ...|+.|.+.-.+++.|+.+.+.
T Consensus 19 L~D~~~~TYWQSDG-----~q~pH~I~i~f~~~v~i~~l~i~ 55 (131)
T cd08667 19 MTDGETSTYWQSDG-----SARSHWIRLKMKPDVVLRHLSIA 55 (131)
T ss_pred hhcCCCCccCccCC-----CCCCeEEEEEecCCeEEEEEEEE
Confidence 67888888996433 23588999888889988888775
Done!