BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 047325
(368 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure
pdb|2YMU|B Chain B, Structure Of A Highly Repetitive Propeller Structure
Length = 577
Score = 82.8 bits (203), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 81/317 (25%), Positives = 133/317 (41%), Gaps = 57/317 (17%)
Query: 33 QNG-LIGSLVREEGHIYSLAASKD--LLYTGSDSKNIRVWKN----LKEFCGFKASSGLV 85
+NG L+ +L ++ +A S D + + SD K +++W L+ G +S V
Sbjct: 127 RNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGV 186
Query: 86 KAIVISGEKIFTGHQDGKIRVWKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRH 145
A G+ I + D +++W ++ L TL
Sbjct: 187 -AFSPDGQTIASASDDKTVKLW---------NRNGQLLQTL------------------- 217
Query: 146 RTALWIRHSDAVSCMSLDQDCGLLYTASWDRTFKVWRISDSKCLESVSAHDDAVNSVVSS 205
HS +V ++ D + +AS D+T K+W + + L++++ H +VN V
Sbjct: 218 -----TGHSSSVRGVAFSPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVNGVAFR 271
Query: 206 SEG-LIFTGSADGTVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSSSRSIVYCGSSD 264
+G I + S D TVK+W R L QTL +V + S + S D
Sbjct: 272 PDGQTIASASDDKTVKLWNRNGQ-------LLQTLTGHSSSVWGVAFSPDGQTIASASDD 324
Query: 265 GLVNFWEREKQLSHGGVLKGHKLAV--LCLAAAGKLVFSGSADKTICVWRRDGAIHTCLS 322
V W R Q H L GH +V + + G+ + S S DKT+ +W R+G + L
Sbjct: 325 KTVKLWNRNGQ--HLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQL---LQ 379
Query: 323 VLTGHTGPVKCLAVEED 339
LTGH+ V+ +A D
Sbjct: 380 TLTGHSSSVRGVAFSPD 396
Score = 82.4 bits (202), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 84/327 (25%), Positives = 138/327 (42%), Gaps = 36/327 (11%)
Query: 33 QNG-LIGSLVREEGHIYSLAASKD--LLYTGSDSKNIRVWKN----LKEFCGFKASSGLV 85
+NG L+ +L + +A S D + + SD K +++W L+ G +S V
Sbjct: 209 RNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVNGV 268
Query: 86 KAIVISGEKIFTGHQDGKIRVWKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRH 145
A G+ I + D +++W Q + G ++ + S +
Sbjct: 269 -AFRPDGQTIASASDDKTVKLWN--RNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDK 325
Query: 146 RTALWIR----------HSDAVSCMSLDQDCGLLYTASWDRTFKVWRISDSKCLESVSAH 195
LW R HS +V ++ D + +AS D+T K+W + + L++++ H
Sbjct: 326 TVKLWNRNGQHLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWN-RNGQLLQTLTGH 384
Query: 196 DDAVNSVVSSSEG-LIFTGSADGTVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSSS 254
+V V S +G I + S D TVK+W R L QTL +V + S
Sbjct: 385 SSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQ-------LLQTLTGHSSSVWGVAFSPD 437
Query: 255 RSIVYCGSSDGLVNFWEREKQLSHGGVLKGHKLAV--LCLAAAGKLVFSGSADKTICVWR 312
+ S D V W R QL L GH +V + + G+ + S S DKT+ +W
Sbjct: 438 DQTIASASDDKTVKLWNRNGQLLQ--TLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWN 495
Query: 313 RDGAIHTCLSVLTGHTGPVKCLAVEED 339
R+G + L LTGH+ V+ +A D
Sbjct: 496 RNGQL---LQTLTGHSSSVRGVAFSPD 519
Score = 79.7 bits (195), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 58/190 (30%), Positives = 90/190 (47%), Gaps = 16/190 (8%)
Query: 153 HSDAVSCMSLDQDCGLLYTASWDRTFKVWRISDSKCLESVSAHDDAVNSVVSSSEG-LIF 211
HS +V ++ D + +AS D+T K+W + + L++++ H +V V S +G I
Sbjct: 56 HSSSVWGVAFSPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVRGVAFSPDGQTIA 114
Query: 212 TGSADGTVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSSSRSIVYCGSSDGLVNFWE 271
+ S D TVK+W R L QTL +V + S + S D V W
Sbjct: 115 SASDDKTVKLWNRNGQ-------LLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWN 167
Query: 272 REKQLSHGGVLKGHKLAV--LCLAAAGKLVFSGSADKTICVWRRDGAIHTCLSVLTGHTG 329
R QL L GH +V + + G+ + S S DKT+ +W R+G + L LTGH+
Sbjct: 168 RNGQLLQ--TLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQL---LQTLTGHSS 222
Query: 330 PVKCLAVEED 339
V+ +A D
Sbjct: 223 SVRGVAFSPD 232
Score = 79.3 bits (194), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 80/316 (25%), Positives = 132/316 (41%), Gaps = 55/316 (17%)
Query: 33 QNG-LIGSLVREEGHIYSLAASKD--LLYTGSDSKNIRVW-KNLKEFCGFKASSGLVKAI 88
+NG L+ +L ++ +A S D + + SD K +++W +N + S V+ +
Sbjct: 45 RNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVRGV 104
Query: 89 VIS--GEKIFTGHQDGKIRVWKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHR 146
S G+ I + D +++W ++ L TL
Sbjct: 105 AFSPDGQTIASASDDKTVKLW---------NRNGQLLQTL-------------------- 135
Query: 147 TALWIRHSDAVSCMSLDQDCGLLYTASWDRTFKVWRISDSKCLESVSAHDDAVNSVVSSS 206
HS +V ++ D + +AS D+T K+W + + L++++ H +V V S
Sbjct: 136 ----TGHSSSVWGVAFSPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVWGVAFSP 190
Query: 207 EG-LIFTGSADGTVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSSSRSIVYCGSSDG 265
+G I + S D TVK+W R L QTL +V + S + S D
Sbjct: 191 DGQTIASASDDKTVKLWNRNGQ-------LLQTLTGHSSSVRGVAFSPDGQTIASASDDK 243
Query: 266 LVNFWEREKQLSHGGVLKGHKLAV--LCLAAAGKLVFSGSADKTICVWRRDGAIHTCLSV 323
V W R QL L GH +V + G+ + S S DKT+ +W R+G + L
Sbjct: 244 TVKLWNRNGQLLQ--TLTGHSSSVNGVAFRPDGQTIASASDDKTVKLWNRNGQL---LQT 298
Query: 324 LTGHTGPVKCLAVEED 339
LTGH+ V +A D
Sbjct: 299 LTGHSSSVWGVAFSPD 314
Score = 77.8 bits (190), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 79/316 (25%), Positives = 131/316 (41%), Gaps = 55/316 (17%)
Query: 33 QNG-LIGSLVREEGHIYSLAASKD--LLYTGSDSKNIRVW-KNLKEFCGFKASSGLVKAI 88
+NG L+ +L ++ +A S D + + SD K +++W +N + S V +
Sbjct: 291 RNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQHLQTLTGHSSSVWGV 350
Query: 89 VIS--GEKIFTGHQDGKIRVWKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHR 146
S G+ I + D +++W ++ L TL
Sbjct: 351 AFSPDGQTIASASDDKTVKLW---------NRNGQLLQTL-------------------- 381
Query: 147 TALWIRHSDAVSCMSLDQDCGLLYTASWDRTFKVWRISDSKCLESVSAHDDAVNSVV-SS 205
HS +V ++ D + +AS D+T K+W + + L++++ H +V V S
Sbjct: 382 ----TGHSSSVRGVAFSPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVWGVAFSP 436
Query: 206 SEGLIFTGSADGTVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSSSRSIVYCGSSDG 265
+ I + S D TVK+W R L QTL +V + S + S D
Sbjct: 437 DDQTIASASDDKTVKLWNRNGQ-------LLQTLTGHSSSVRGVAFSPDGQTIASASDDK 489
Query: 266 LVNFWEREKQLSHGGVLKGHKLAV--LCLAAAGKLVFSGSADKTICVWRRDGAIHTCLSV 323
V W R QL L GH +V + + G+ + S S DKT+ +W R+G + L
Sbjct: 490 TVKLWNRNGQLLQ--TLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQL---LQT 544
Query: 324 LTGHTGPVKCLAVEED 339
LTGH+ V +A D
Sbjct: 545 LTGHSSSVWGVAFSPD 560
Score = 77.4 bits (189), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 58/190 (30%), Positives = 89/190 (46%), Gaps = 16/190 (8%)
Query: 153 HSDAVSCMSLDQDCGLLYTASWDRTFKVWRISDSKCLESVSAHDDAVNSVVSSSEG-LIF 211
HS +V ++ D + +AS D+T K+W + + L++++ H +V V S +G I
Sbjct: 15 HSSSVRGVAFSPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVWGVAFSPDGQTIA 73
Query: 212 TGSADGTVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSSSRSIVYCGSSDGLVNFWE 271
+ S D TVK+W R L QTL +V + S + S D V W
Sbjct: 74 SASDDKTVKLWNRNGQ-------LLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWN 126
Query: 272 REKQLSHGGVLKGHKLAV--LCLAAAGKLVFSGSADKTICVWRRDGAIHTCLSVLTGHTG 329
R QL L GH +V + + G+ + S S DKT+ +W R+G + L LTGH+
Sbjct: 127 RNGQLLQ--TLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQL---LQTLTGHSS 181
Query: 330 PVKCLAVEED 339
V +A D
Sbjct: 182 SVWGVAFSPD 191
Score = 62.8 bits (151), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 48/151 (31%), Positives = 67/151 (44%), Gaps = 15/151 (9%)
Query: 192 VSAHDDAVNSVVSSSEG-LIFTGSADGTVKVWKREQHGKGTKHSLAQTLLKQECAVTALV 250
+ AH +V V S +G I + S D TVK+W R L QTL +V +
Sbjct: 12 LEAHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQ-------LLQTLTGHSSSVWGVA 64
Query: 251 VSSSRSIVYCGSSDGLVNFWEREKQLSHGGVLKGHKLAV--LCLAAAGKLVFSGSADKTI 308
S + S D V W R QL L GH +V + + G+ + S S DKT+
Sbjct: 65 FSPDGQTIASASDDKTVKLWNRNGQLLQ--TLTGHSSSVRGVAFSPDGQTIASASDDKTV 122
Query: 309 CVWRRDGAIHTCLSVLTGHTGPVKCLAVEED 339
+W R+G + L LTGH+ V +A D
Sbjct: 123 KLWNRNGQL---LQTLTGHSSSVWGVAFSPD 150
Score = 36.6 bits (83), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 35/69 (50%), Gaps = 8/69 (11%)
Query: 271 EREKQLSHGGVLKGHKLAVLCLAAAGKLVFSGSADKTICVWRRDGAIHTCLSVLTGHTGP 330
ER + +H ++G + + G+ + S S DKT+ +W R+G + L LTGH+
Sbjct: 8 ERNRLEAHSSSVRG-----VAFSPDGQTIASASDDKTVKLWNRNGQL---LQTLTGHSSS 59
Query: 331 VKCLAVEED 339
V +A D
Sbjct: 60 VWGVAFSPD 68
Score = 29.3 bits (64), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 35/166 (21%), Positives = 68/166 (40%), Gaps = 18/166 (10%)
Query: 33 QNG-LIGSLVREEGHIYSLAASKD--LLYTGSDSKNIRVW-KNLKEFCGFKASSGLVKAI 88
+NG L+ +L ++ +A S D + + SD K +++W +N + S V+ +
Sbjct: 414 RNGQLLQTLTGHSSSVWGVAFSPDDQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVRGV 473
Query: 89 VIS--GEKIFTGHQDGKIRVWKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHR 146
S G+ I + D +++W Q + G +++ + S +
Sbjct: 474 AFSPDGQTIASASDDKTVKLWN--RNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKT 531
Query: 147 TALWIR----------HSDAVSCMSLDQDCGLLYTASWDRTFKVWR 182
LW R HS +V ++ D + +AS D+T K+W
Sbjct: 532 VKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASSDKTVKLWN 577
>pdb|1P22|A Chain A, Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex:
Destruction Motif Binding And Lysine Specificity On The
Scfbeta-Trcp1 Ubiquitin Ligase
Length = 435
Score = 73.9 bits (180), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 69/265 (26%), Positives = 109/265 (41%), Gaps = 44/265 (16%)
Query: 76 CGFKASSGLVKAIVISGEKIFTGHQDGKIRVWKISPKNQSVHKRAGTLPTLKDIFKSSIK 135
C + S G V + +KI +G +D I++W
Sbjct: 128 CRSETSKG-VYCLQYDDQKIVSGLRDNTIKIWD--------------------------- 159
Query: 136 PSNYIEVRRHRTALWIRHSDAVSCMSLDQDCGLLYTASWDRTFKVWRISDSKCLESVSAH 195
N +E +R T H+ +V C+ D+ ++ T S D T +VW ++ + L ++ H
Sbjct: 160 -KNTLECKRILTG----HTGSVLCLQYDE--RVIITGSSDSTVRVWDVNTGEMLNTLIHH 212
Query: 196 DDAVNSVVSSSEGLIFTGSADGTVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSSSR 255
+AV + + G++ T S D ++ VW T +L + L+ AV VV
Sbjct: 213 CEAVLHL-RFNNGMMVTCSKDRSIAVW---DMASPTDITLRRVLVGHRAAVN--VVDFDD 266
Query: 256 SIVYCGSSDGLVNFWEREKQLSHGGVLKGHKLAVLCLAAAGKLVFSGSADKTICVWRRDG 315
+ S D + W L GHK + CL +LV SGS+D TI +W D
Sbjct: 267 KYIVSASGDRTIKVWN-TSTCEFVRTLNGHKRGIACLQYRDRLVVSGSSDNTIRLW--DI 323
Query: 316 AIHTCLSVLTGHTGPVKCLAVEEDR 340
CL VL GH V+C+ + R
Sbjct: 324 ECGACLRVLEGHEELVRCIRFDNKR 348
Score = 62.4 bits (150), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 76/304 (25%), Positives = 114/304 (37%), Gaps = 56/304 (18%)
Query: 47 IYSLAASKDLLYTGSDSKNIRVWKNLKEFCG--FKASSGLVKAIVISGEKIFTGHQDGKI 104
+Y L + +G I++W C +G V + I TG D +
Sbjct: 136 VYCLQYDDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQYDERVIITGSSDSTV 195
Query: 105 RVWKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQ 164
RVW ++ L TL I H +AV + L
Sbjct: 196 RVWDVNTGEM--------LNTL------------------------IHHCEAV--LHLRF 221
Query: 165 DCGLLYTASWDRTFKVWRI---SDSKCLESVSAHDDAVNSVVSSSEGLIFTGSADGTVKV 221
+ G++ T S DR+ VW + +D + H AVN VV + I + S D T+KV
Sbjct: 222 NNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVN-VVDFDDKYIVSASGDRTIKV 280
Query: 222 WKREQHGKGTKHSLAQTLLKQECAVTALVVSSSRSIVYCGSSDGLVNFWEREKQLSHGGV 281
W + +TL + + L +V GSSD + W+ E + V
Sbjct: 281 WN------TSTCEFVRTLNGHKRGIACLQYRDR--LVVSGSSDNTIRLWDIECG-ACLRV 331
Query: 282 LKGHKLAVLCLAAAGKLVFSGSADKTICVWRRDGAIHT-------CLSVLTGHTGPVKCL 334
L+GH+ V C+ K + SG+ D I VW A+ CL L H+G V L
Sbjct: 332 LEGHEELVRCIRFDNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRL 391
Query: 335 AVEE 338
+E
Sbjct: 392 QFDE 395
Score = 45.8 bits (107), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 44/191 (23%), Positives = 81/191 (42%), Gaps = 16/191 (8%)
Query: 45 GHIYSLAASKDLLYTGSDSKNIRVWK-NLKEFCG-FKASSGLVKAIVISGEKIFTGHQDG 102
G + L + ++ TGS +RVW N E V + + + T +D
Sbjct: 174 GSVLCLQYDERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDR 233
Query: 103 KIRVWKI-SPKNQSV------HKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIR--- 152
I VW + SP + ++ H+ A + D + S I+V T ++R
Sbjct: 234 SIAVWDMASPTDITLRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWNTSTCEFVRTLN 293
Query: 153 -HSDAVSCMSLDQDCGLLYTASWDRTFKVWRISDSKCLESVSAHDDAVNSVVSSSEGLIF 211
H ++C+ L+ + S D T ++W I CL + H++ V + ++ ++
Sbjct: 294 GHKRGIACLQYRD--RLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFDNKRIV- 350
Query: 212 TGSADGTVKVW 222
+G+ DG +KVW
Sbjct: 351 SGAYDGKIKVW 361
>pdb|1NEX|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
pdb|1NEX|D Chain D, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
Length = 464
Score = 70.9 bits (172), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 58/220 (26%), Positives = 97/220 (44%), Gaps = 34/220 (15%)
Query: 145 HRTALWIRHSDAVSCMSLDQDCGLLYTASWDRTFKVWRISDSKCLESVSAHDDAVNSVVS 204
RT L + ++C+ + + + T + D+ +V+ + K L +S HD V ++
Sbjct: 113 QRTTLRGHXTSVITCLQFEDN--YVITGADDKXIRVYDSINKKFLLQLSGHDGGVWALKY 170
Query: 205 SSEGLIFTGSADGTVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSSSRSIVYC--GS 262
+ G++ +GS D TV+VW + K V L + ++I Y GS
Sbjct: 171 AHGGILVSGSTDRTVRVWDIK------KGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGS 224
Query: 263 SDGLVNFWEREKQLS---HG-------------------GVLKGHKLAVLCLAAAGKLVF 300
D ++ W+ K+ S HG GVL+GH +V ++ G +V
Sbjct: 225 RDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHXASVRTVSGHGNIVV 284
Query: 301 SGSADKTICVWRRDGAIHTCLSVLTGHTGPVKCLAVEEDR 340
SGS D T+ VW D A CL +L+GHT + + +R
Sbjct: 285 SGSYDNTLIVW--DVAQXKCLYILSGHTDRIYSTIYDHER 322
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 71/315 (22%), Positives = 124/315 (39%), Gaps = 69/315 (21%)
Query: 26 QFEENLPQNGLIGSLVR---------------EEGHIYSLA-ASKDLLYTGSDSKNIRVW 69
QFE+N G +R +G +++L A +L +GS + +RVW
Sbjct: 129 QFEDNYVITGADDKXIRVYDSINKKFLLQLSGHDGGVWALKYAHGGILVSGSTDRTVRVW 188
Query: 70 KNLKEFCG--FKASSGLVKAIVISGEK----IFTGHQDGKIRVWKISPKNQSV--HKRAG 121
K C F+ + V+ + I K I TG +D + VWK+ PK SV H
Sbjct: 189 DIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKL-PKESSVPDHGEEH 247
Query: 122 TLPTLKDIFKSSIKPSNYIEVRRHRTA-------------------------------LW 150
P +F + + ++ V R A L+
Sbjct: 248 DYPL---VFHTPEENPYFVGVLRGHXASVRTVSGHGNIVVSGSYDNTLIVWDVAQXKCLY 304
Query: 151 IR--HSDAVSCMSLDQDCGLLYTASWDRTFKVWRISDSKCLESVSAHDDAVNSVVSSSEG 208
I H+D + D + +AS D T ++W + + + ++ H A+ ++ S+
Sbjct: 305 ILSGHTDRIYSTIYDHERKRCISASXDTTIRIWDLENGELXYTLQGH-TALVGLLRLSDK 363
Query: 209 LIFTGSADGTVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSSSRSIVYCGSSDGLVN 268
+ + +ADG+++ W + + K S T L A+T VS +I+ GS +
Sbjct: 364 FLVSAAADGSIRGWDANDYSR--KFSYHHTNL---SAITTFYVSD--NILVSGSENQFNI 416
Query: 269 FWEREKQLSHGGVLK 283
+ R +L H +LK
Sbjct: 417 YNLRSGKLVHANILK 431
Score = 37.7 bits (86), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 69/292 (23%), Positives = 111/292 (38%), Gaps = 32/292 (10%)
Query: 47 IYSLAASKDLLYTGSDSKNIRVWK--NLKEFCGFKASSGLVKAIVIS-GEKIFTGHQDGK 103
I L + + TG+D K IRV+ N K G V A+ + G + +G D
Sbjct: 125 ITCLQFEDNYVITGADDKXIRVYDSINKKFLLQLSGHDGGVWALKYAHGGILVSGSTDRT 184
Query: 104 IRVWKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEV--RRHRTALW-IRHSDAVSCM 160
+RVW I K H G T++ + K YI R + +W + +V
Sbjct: 185 VRVWDIK-KGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDH 243
Query: 161 SLDQDCGLLYTASWDRTFKVWRISDSKCLESVSAHDDAVNSVVSSSEGLIFTGSADGTVK 220
+ D L++ + + V + H +V +V S ++ +GS D T+
Sbjct: 244 GEEHDYPLVFHTPEENPYFV---------GVLRGHXASVRTV-SGHGNIVVSGSYDNTLI 293
Query: 221 VWKREQHGKGTKHSLAQTLLKQECAVTALVVSSSRSIVYCGSSDGLVNFWEREK-QLSHG 279
VW Q L + + + R S D + W+ E +L +
Sbjct: 294 VWDVAQX------KCLYILSGHTDRIYSTIYDHERKRCISASXDTTIRIWDLENGELXY- 346
Query: 280 GVLKGHKLAVLCLAAAGKLVFSGSADKTICVW------RRDGAIHTCLSVLT 325
L+GH V L + K + S +AD +I W R+ HT LS +T
Sbjct: 347 -TLQGHTALVGLLRLSDKFLVSAAADGSIRGWDANDYSRKFSYHHTNLSAIT 397
>pdb|3MKS|B Chain B, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3MKS|D Chain D, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3V7D|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
pdb|3V7D|D Chain D, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
Length = 464
Score = 70.5 bits (171), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 58/220 (26%), Positives = 97/220 (44%), Gaps = 34/220 (15%)
Query: 145 HRTALWIRHSDAVSCMSLDQDCGLLYTASWDRTFKVWRISDSKCLESVSAHDDAVNSVVS 204
RT L + ++C+ + + + T + D+ +V+ + K L +S HD V ++
Sbjct: 113 QRTTLRGHMTSVITCLQFEDN--YVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKY 170
Query: 205 SSEGLIFTGSADGTVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSSSRSIVYC--GS 262
+ G++ +GS D TV+VW + K V L + ++I Y GS
Sbjct: 171 AHGGILVSGSTDRTVRVWDIK------KGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGS 224
Query: 263 SDGLVNFWEREKQLS---HG-------------------GVLKGHKLAVLCLAAAGKLVF 300
D ++ W+ K+ S HG GVL+GH +V ++ G +V
Sbjct: 225 RDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHGNIVV 284
Query: 301 SGSADKTICVWRRDGAIHTCLSVLTGHTGPVKCLAVEEDR 340
SGS D T+ VW D A CL +L+GHT + + +R
Sbjct: 285 SGSYDNTLIVW--DVAQMKCLYILSGHTDRIYSTIYDHER 322
Score = 52.8 bits (125), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 71/315 (22%), Positives = 126/315 (40%), Gaps = 69/315 (21%)
Query: 26 QFEENLPQNGLIGSLVR---------------EEGHIYSLA-ASKDLLYTGSDSKNIRVW 69
QFE+N G ++R +G +++L A +L +GS + +RVW
Sbjct: 129 QFEDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGGILVSGSTDRTVRVW 188
Query: 70 KNLKEFCG--FKASSGLVKAIVISGEK----IFTGHQDGKIRVWKISPKNQSV--HKRAG 121
K C F+ + V+ + I K I TG +D + VWK+ PK SV H
Sbjct: 189 DIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKL-PKESSVPDHGEEH 247
Query: 122 TLPTLKDIFKSSIKPSNYIEVRRHRTA-------------------------------LW 150
P +F + + ++ V R A L+
Sbjct: 248 DYPL---VFHTPEENPYFVGVLRGHMASVRTVSGHGNIVVSGSYDNTLIVWDVAQMKCLY 304
Query: 151 IR--HSDAVSCMSLDQDCGLLYTASWDRTFKVWRISDSKCLESVSAHDDAVNSVVSSSEG 208
I H+D + D + +AS D T ++W + + + + ++ H A+ ++ S+
Sbjct: 305 ILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQGH-TALVGLLRLSDK 363
Query: 209 LIFTGSADGTVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSSSRSIVYCGSSDGLVN 268
+ + +ADG+++ W + + K S T L A+T VS +I+ GS +
Sbjct: 364 FLVSAAADGSIRGWDANDYSR--KFSYHHTNL---SAITTFYVSD--NILVSGSENQFNI 416
Query: 269 FWEREKQLSHGGVLK 283
+ R +L H +LK
Sbjct: 417 YNLRSGKLVHANILK 431
Score = 37.7 bits (86), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 54/224 (24%), Positives = 81/224 (36%), Gaps = 65/224 (29%)
Query: 167 GLLYTASWDRTFKVWRISDSKCLESVSAHDDAV---NSVVSSSEGLIFTGSADGTVKVWK 223
G+L + S DRT +VW I C H+ V + V + I TGS D T+ VWK
Sbjct: 174 GILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWK 233
Query: 224 REQ------HGKGTKHSLAQTLLKQECAVTALV---------VSSSRSIVYCGSSDGLVN 268
+ HG+ + L ++ ++ VS +IV GS D +
Sbjct: 234 LPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHGNIVVSGSYDNTLI 293
Query: 269 FW-------------------------EREK-------------QLSHGGV---LKGHKL 287
W ER++ L +G + L+GH
Sbjct: 294 VWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQGHTA 353
Query: 288 AVLCLAAAGKLVFSGSADKTICVW------RRDGAIHTCLSVLT 325
V L + K + S +AD +I W R+ HT LS +T
Sbjct: 354 LVGLLRLSDKFLVSAAADGSIRGWDANDYSRKFSYHHTNLSAIT 397
>pdb|2OVP|B Chain B, Structure Of The Skp1-Fbw7 Complex
pdb|2OVQ|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegc Complex
pdb|2OVR|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegn Complex
Length = 445
Score = 70.5 bits (171), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 63/188 (33%), Positives = 83/188 (44%), Gaps = 19/188 (10%)
Query: 153 HSD-AVSCMSLDQDCG-LLYTASWDRTFKVWRISDSKCLESVSAHDDAVNSVVSSSEGLI 210
H D ++C+ Q CG + + S D T KVW KCL ++ H V S + +I
Sbjct: 117 HDDHVITCL---QFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSS-QMRDNII 172
Query: 211 FTGSADGTVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSSSRSIVYCGSSDGLVNFW 270
+GS D T+KVW E TL V + + R V GS D + W
Sbjct: 173 ISGSTDRTLKVWNAE------TGECIHTLYGHTSTVRCMHLHEKR--VVSGSRDATLRVW 224
Query: 271 EREK-QLSHGGVLKGHKLAVLCLAAAGKLVFSGSADKTICVWRRDGAIHTCLSVLTGHTG 329
+ E Q H VL GH AV C+ G+ V SG+ D + VW D TCL L GHT
Sbjct: 225 DIETGQCLH--VLMGHVAAVRCVQYDGRRVVSGAYDFMVKVW--DPETETCLHTLQGHTN 280
Query: 330 PVKCLAVE 337
V L +
Sbjct: 281 RVYSLQFD 288
Score = 58.9 bits (141), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 50/160 (31%), Positives = 71/160 (44%), Gaps = 12/160 (7%)
Query: 168 LLYTASWDRTFKVWRISDSKCLESVSAHDDAVNSVVSSSEGLIFTGSADGTVKVWKREQH 227
++ + S DRT KVW +C+ ++ H V + E + +GS D T++VW E
Sbjct: 171 IIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCM-HLHEKRVVSGSRDATLRVWDIE-- 227
Query: 228 GKGTKHSLAQTLLKQECAVTALVVSSSRSIVYCGSSDGLVNFWEREKQLSHGGVLKGHKL 287
T L L+ AV + R V G+ D +V W+ E + L+GH
Sbjct: 228 ---TGQCL-HVLMGHVAAVRCVQYDGRR--VVSGAYDFMVKVWDPETETCLH-TLQGHTN 280
Query: 288 AVLCLAAAGKLVFSGSADKTICVWRRDGAIHTCLSVLTGH 327
V L G V SGS D +I VW D C+ LTGH
Sbjct: 281 RVYSLQFDGIHVVSGSLDTSIRVW--DVETGNCIHTLTGH 318
Score = 58.5 bits (140), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 51/163 (31%), Positives = 71/163 (43%), Gaps = 17/163 (10%)
Query: 181 WRISDSKCLESVSAHDDAVNSVVSSSEGLIFTGSADGTVKVWKREQHGKGTKHSLAQTLL 240
WR + K + + HDD V + + I +GS D T+KVW ++ L
Sbjct: 103 WRRGELKSPKVLKGHDDHVITCLQFCGNRIVSGSDDNTLKVWS----------AVTGKCL 152
Query: 241 KQECAVTALVVSSSR--SIVYCGSSDGLVNFWEREK-QLSHGGVLKGHKLAVLCLAAAGK 297
+ T V SS +I+ GS+D + W E + H L GH V C+ K
Sbjct: 153 RTLVGHTGGVWSSQMRDNIIISGSTDRTLKVWNAETGECIH--TLYGHTSTVRCMHLHEK 210
Query: 298 LVFSGSADKTICVWRRDGAIHTCLSVLTGHTGPVKCLAVEEDR 340
V SGS D T+ VW D CL VL GH V+C+ + R
Sbjct: 211 RVVSGSRDATLRVW--DIETGQCLHVLMGHVAAVRCVQYDGRR 251
Score = 58.5 bits (140), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 68/298 (22%), Positives = 128/298 (42%), Gaps = 25/298 (8%)
Query: 39 SLVREEGHIYSLAASKDLLYTGSDSKNIRVWKNLKEFC--GFKASSGLVKAIVISGEKIF 96
+LV G ++S +++ +GS + ++VW C + V+ + + +++
Sbjct: 154 TLVGHTGGVWSSQMRDNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVV 213
Query: 97 TGHQDGKIRVWKISPKNQSVHKRAGTLPTLKDIF---KSSIKPSNYIEVR----RHRTAL 149
+G +D +RVW I Q +H G + ++ + + + + V+ T L
Sbjct: 214 SGSRDATLRVWDIET-GQCLHVLMGHVAAVRCVQYDGRRVVSGAYDFMVKVWDPETETCL 272
Query: 150 WIRHSDAVSCMSLDQDCGLLYTASWDRTFKVWRISDSKCLESVSAHDDAVNSVVSSSEGL 209
SL D + + S D + +VW + C+ +++ H ++ S + + +
Sbjct: 273 HTLQGHTNRVYSLQFDGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQ-SLTSGMELKDNI 331
Query: 210 IFTGSADGTVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSSSRSIVYCGSSDGLVNF 269
+ +G+AD TVK+W + G Q K + AVT L +++ V S DG V
Sbjct: 332 LVSGNADSTVKIWDIK---TGQCLQTLQGPNKHQSAVTCL--QFNKNFVITSSDDGTVKL 386
Query: 270 WEREKQLSHGGVLKGHKLAVLCLAAAGKLVF--SGSADKTIC-VWRRDGAIHTCLSVL 324
W+ L G ++ L L +G +V+ S K +C V R+G T L VL
Sbjct: 387 WD----LKTGEFIR--NLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGTEETKLLVL 438
>pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL2|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL3|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
pdb|2XL3|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
Length = 334
Score = 65.1 bits (157), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 52/189 (27%), Positives = 87/189 (46%), Gaps = 19/189 (10%)
Query: 153 HSDAVSCMSLDQDCGLLYTASWDRTFKVWRISDSKCLESVSAHDDAVNSV-VSSSEGLIF 211
H +S ++ D LL +AS D+T K+W +S KCL+++ H + V + LI
Sbjct: 86 HKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIV 145
Query: 212 TGSADGTVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSSSRSIVYCGSSDGLVNFWE 271
+GS D +V++W + GK K TL V+A+ + S++ S DGL W+
Sbjct: 146 SGSFDESVRIWDVKT-GKCLK-----TLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWD 199
Query: 272 REKQLSHGGVLK------GHKLAVLCLAAAGKLVFSGSADKTICVWRRDGAIHTCLSVLT 325
+ G LK ++ + + GK + + + D T+ +W D + CL T
Sbjct: 200 T----ASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLW--DYSKGKCLKTYT 253
Query: 326 GHTGPVKCL 334
GH C+
Sbjct: 254 GHKNEKYCI 262
Score = 64.7 bits (156), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 49/188 (26%), Positives = 83/188 (44%), Gaps = 20/188 (10%)
Query: 153 HSDAVSCMSLDQDCGLLYTASWDRTFKVWRISDSKCLESVSAHDDAVNSVVSSSEG-LIF 211
HS+ V C + + L+ + S+D + ++W + KCL+++ AH D V++V + +G LI
Sbjct: 128 HSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIV 187
Query: 212 TGSADGTVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSSSRSIVYCGSSDGLVNFWE 271
+ S DG ++W + L + V+ + S + + + D + W+
Sbjct: 188 SSSYDGLCRIWDT-----ASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWD 242
Query: 272 REKQLSHGGVLK---GHKLAVLCLAA-----AGKLVFSGSADKTICVWRRDGAIHTCLSV 323
K G LK GHK C+ A GK + SGS D + +W +
Sbjct: 243 YSK----GKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQ--TKEIVQK 296
Query: 324 LTGHTGPV 331
L GHT V
Sbjct: 297 LQGHTDVV 304
Score = 56.2 bits (134), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 71/285 (24%), Positives = 110/285 (38%), Gaps = 68/285 (23%)
Query: 51 AASKDLLYTGSDSKNIRVW-----KNLKEF---------CGFKASSGLVKAIVISGEKIF 96
++ +LL + SD K +++W K LK C F S L I
Sbjct: 96 SSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNL----------IV 145
Query: 97 TGHQDGKIRVWKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDA 156
+G D +R+W + K TLP HSD
Sbjct: 146 SGSFDESVRIWDV-----KTGKCLKTLPA---------------------------HSDP 173
Query: 157 VSCMSLDQDCGLLYTASWDRTFKVWRISDSKCLESVSAHDDAVNSVVSSSEG--LIFTGS 214
VS + ++D L+ ++S+D ++W + +CL+++ D+ S V S I +
Sbjct: 174 VSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAAT 233
Query: 215 ADGTVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSSSRSIVYCGSSDGLVNFWE-RE 273
D T+K+W + GK K K C V+ + IV GS D LV W +
Sbjct: 234 LDNTLKLWDYSK-GKCLKTYTGHKNEKY-CIFANFSVTGGKWIV-SGSEDNLVYIWNLQT 290
Query: 274 KQLSHGGVLKGHKLAVLCLAAAGKLVFSGSA----DKTICVWRRD 314
K++ L+GH V+ A SA DKTI +W+ D
Sbjct: 291 KEIVQK--LQGHTDVVISTACHPTENIIASAALENDKTIKLWKSD 333
Score = 46.2 bits (108), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 48/192 (25%), Positives = 73/192 (38%), Gaps = 56/192 (29%)
Query: 153 HSDAVSCMSLDQDCGLLYTASWDRTFKVWRISDSKCLESVSAHDDAVNSVV-SSSEGLIF 211
H+ AVS + + L ++S D+ K+W D K +++S H ++ V SS L+
Sbjct: 44 HTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLV 103
Query: 212 TGSADGTVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSSSRSIVYCGSSDGLVNFWE 271
+ S D T+K+W VSS + +
Sbjct: 104 SASDDKTLKIWD---------------------------VSSGKCL-------------- 122
Query: 272 REKQLSHGGVLKGHKLAVLC--LAAAGKLVFSGSADKTICVWRRDGAIHTCLSVLTGHTG 329
LKGH V C L+ SGS D+++ +W D CL L H+
Sbjct: 123 --------KTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW--DVKTGKCLKTLPAHSD 172
Query: 330 PVKCLAVEEDRD 341
PV AV +RD
Sbjct: 173 PVS--AVHFNRD 182
>pdb|2GNQ|A Chain A, Structure Of Wdr5
Length = 336
Score = 65.1 bits (157), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 52/189 (27%), Positives = 87/189 (46%), Gaps = 19/189 (10%)
Query: 153 HSDAVSCMSLDQDCGLLYTASWDRTFKVWRISDSKCLESVSAHDDAVNSV-VSSSEGLIF 211
H +S ++ D LL +AS D+T K+W +S KCL+++ H + V + LI
Sbjct: 88 HKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIV 147
Query: 212 TGSADGTVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSSSRSIVYCGSSDGLVNFWE 271
+GS D +V++W + GK K TL V+A+ + S++ S DGL W+
Sbjct: 148 SGSFDESVRIWDVKT-GKCLK-----TLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWD 201
Query: 272 REKQLSHGGVLK------GHKLAVLCLAAAGKLVFSGSADKTICVWRRDGAIHTCLSVLT 325
+ G LK ++ + + GK + + + D T+ +W D + CL T
Sbjct: 202 T----ASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLW--DYSKGKCLKTYT 255
Query: 326 GHTGPVKCL 334
GH C+
Sbjct: 256 GHKNEKYCI 264
Score = 64.3 bits (155), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 49/188 (26%), Positives = 83/188 (44%), Gaps = 20/188 (10%)
Query: 153 HSDAVSCMSLDQDCGLLYTASWDRTFKVWRISDSKCLESVSAHDDAVNSVVSSSEG-LIF 211
HS+ V C + + L+ + S+D + ++W + KCL+++ AH D V++V + +G LI
Sbjct: 130 HSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIV 189
Query: 212 TGSADGTVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSSSRSIVYCGSSDGLVNFWE 271
+ S DG ++W + L + V+ + S + + + D + W+
Sbjct: 190 SSSYDGLCRIWDT-----ASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWD 244
Query: 272 REKQLSHGGVLK---GHKLAVLCLAA-----AGKLVFSGSADKTICVWRRDGAIHTCLSV 323
K G LK GHK C+ A GK + SGS D + +W +
Sbjct: 245 YSK----GKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQ--TKEIVQK 298
Query: 324 LTGHTGPV 331
L GHT V
Sbjct: 299 LQGHTDVV 306
Score = 56.2 bits (134), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 71/285 (24%), Positives = 110/285 (38%), Gaps = 68/285 (23%)
Query: 51 AASKDLLYTGSDSKNIRVW-----KNLKEF---------CGFKASSGLVKAIVISGEKIF 96
++ +LL + SD K +++W K LK C F S L I
Sbjct: 98 SSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNL----------IV 147
Query: 97 TGHQDGKIRVWKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDA 156
+G D +R+W + K TLP HSD
Sbjct: 148 SGSFDESVRIWDV-----KTGKCLKTLPA---------------------------HSDP 175
Query: 157 VSCMSLDQDCGLLYTASWDRTFKVWRISDSKCLESVSAHDDAVNSVVSSSEG--LIFTGS 214
VS + ++D L+ ++S+D ++W + +CL+++ D+ S V S I +
Sbjct: 176 VSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAAT 235
Query: 215 ADGTVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSSSRSIVYCGSSDGLVNFWE-RE 273
D T+K+W + GK K K C V+ + IV GS D LV W +
Sbjct: 236 LDNTLKLWDYSK-GKCLKTYTGHKNEKY-CIFANFSVTGGKWIV-SGSEDNLVYIWNLQT 292
Query: 274 KQLSHGGVLKGHKLAVLCLAAAGKLVFSGSA----DKTICVWRRD 314
K++ L+GH V+ A SA DKTI +W+ D
Sbjct: 293 KEIVQK--LQGHTDVVISTACHPTENIIASAALENDKTIKLWKSD 335
Score = 46.2 bits (108), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 48/192 (25%), Positives = 73/192 (38%), Gaps = 56/192 (29%)
Query: 153 HSDAVSCMSLDQDCGLLYTASWDRTFKVWRISDSKCLESVSAHDDAVNSVV-SSSEGLIF 211
H+ AVS + + L ++S D+ K+W D K +++S H ++ V SS L+
Sbjct: 46 HTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLV 105
Query: 212 TGSADGTVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSSSRSIVYCGSSDGLVNFWE 271
+ S D T+K+W VSS + +
Sbjct: 106 SASDDKTLKIWD---------------------------VSSGKCL-------------- 124
Query: 272 REKQLSHGGVLKGHKLAVLC--LAAAGKLVFSGSADKTICVWRRDGAIHTCLSVLTGHTG 329
LKGH V C L+ SGS D+++ +W D CL L H+
Sbjct: 125 --------KTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW--DVKTGKCLKTLPAHSD 174
Query: 330 PVKCLAVEEDRD 341
PV AV +RD
Sbjct: 175 PVS--AVHFNRD 184
>pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction
Length = 318
Score = 65.1 bits (157), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 52/189 (27%), Positives = 87/189 (46%), Gaps = 19/189 (10%)
Query: 153 HSDAVSCMSLDQDCGLLYTASWDRTFKVWRISDSKCLESVSAHDDAVNSV-VSSSEGLIF 211
H +S ++ D LL +AS D+T K+W +S KCL+++ H + V + LI
Sbjct: 70 HKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIV 129
Query: 212 TGSADGTVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSSSRSIVYCGSSDGLVNFWE 271
+GS D +V++W + GK K TL V+A+ + S++ S DGL W+
Sbjct: 130 SGSFDESVRIWDVKT-GKCLK-----TLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWD 183
Query: 272 REKQLSHGGVLK------GHKLAVLCLAAAGKLVFSGSADKTICVWRRDGAIHTCLSVLT 325
+ G LK ++ + + GK + + + D T+ +W D + CL T
Sbjct: 184 T----ASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLW--DYSKGKCLKTYT 237
Query: 326 GHTGPVKCL 334
GH C+
Sbjct: 238 GHKNEKYCI 246
Score = 64.7 bits (156), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 49/188 (26%), Positives = 83/188 (44%), Gaps = 20/188 (10%)
Query: 153 HSDAVSCMSLDQDCGLLYTASWDRTFKVWRISDSKCLESVSAHDDAVNSVVSSSEG-LIF 211
HS+ V C + + L+ + S+D + ++W + KCL+++ AH D V++V + +G LI
Sbjct: 112 HSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIV 171
Query: 212 TGSADGTVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSSSRSIVYCGSSDGLVNFWE 271
+ S DG ++W + L + V+ + S + + + D + W+
Sbjct: 172 SSSYDGLCRIWDT-----ASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWD 226
Query: 272 REKQLSHGGVLK---GHKLAVLCLAA-----AGKLVFSGSADKTICVWRRDGAIHTCLSV 323
K G LK GHK C+ A GK + SGS D + +W +
Sbjct: 227 YSK----GKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQ--TKEIVQK 280
Query: 324 LTGHTGPV 331
L GHT V
Sbjct: 281 LQGHTDVV 288
Score = 56.2 bits (134), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 71/285 (24%), Positives = 110/285 (38%), Gaps = 68/285 (23%)
Query: 51 AASKDLLYTGSDSKNIRVW-----KNLKEF---------CGFKASSGLVKAIVISGEKIF 96
++ +LL + SD K +++W K LK C F S L I
Sbjct: 80 SSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNL----------IV 129
Query: 97 TGHQDGKIRVWKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDA 156
+G D +R+W + K TLP HSD
Sbjct: 130 SGSFDESVRIWDV-----KTGKCLKTLPA---------------------------HSDP 157
Query: 157 VSCMSLDQDCGLLYTASWDRTFKVWRISDSKCLESVSAHDDAVNSVVSSSEG--LIFTGS 214
VS + ++D L+ ++S+D ++W + +CL+++ D+ S V S I +
Sbjct: 158 VSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAAT 217
Query: 215 ADGTVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSSSRSIVYCGSSDGLVNFWE-RE 273
D T+K+W + GK K K C V+ + IV GS D LV W +
Sbjct: 218 LDNTLKLWDYSK-GKCLKTYTGHKNEKY-CIFANFSVTGGKWIV-SGSEDNLVYIWNLQT 274
Query: 274 KQLSHGGVLKGHKLAVLCLAAAGKLVFSGSA----DKTICVWRRD 314
K++ L+GH V+ A SA DKTI +W+ D
Sbjct: 275 KEIVQK--LQGHTDVVISTACHPTENIIASAALENDKTIKLWKSD 317
Score = 45.8 bits (107), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 48/192 (25%), Positives = 73/192 (38%), Gaps = 56/192 (29%)
Query: 153 HSDAVSCMSLDQDCGLLYTASWDRTFKVWRISDSKCLESVSAHDDAVNSVV-SSSEGLIF 211
H+ AVS + + L ++S D+ K+W D K +++S H ++ V SS L+
Sbjct: 28 HTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLV 87
Query: 212 TGSADGTVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSSSRSIVYCGSSDGLVNFWE 271
+ S D T+K+W VSS + +
Sbjct: 88 SASDDKTLKIWD---------------------------VSSGKCL-------------- 106
Query: 272 REKQLSHGGVLKGHKLAVLC--LAAAGKLVFSGSADKTICVWRRDGAIHTCLSVLTGHTG 329
LKGH V C L+ SGS D+++ +W D CL L H+
Sbjct: 107 --------KTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW--DVKTGKCLKTLPAHSD 156
Query: 330 PVKCLAVEEDRD 341
PV AV +RD
Sbjct: 157 PVS--AVHFNRD 166
>pdb|2H9L|A Chain A, Wdr5delta23
pdb|2H9P|A Chain A, Wdr5 In Complex With Trimethylated H3k4 Peptide
Length = 329
Score = 64.7 bits (156), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 52/189 (27%), Positives = 87/189 (46%), Gaps = 19/189 (10%)
Query: 153 HSDAVSCMSLDQDCGLLYTASWDRTFKVWRISDSKCLESVSAHDDAVNSV-VSSSEGLIF 211
H +S ++ D LL +AS D+T K+W +S KCL+++ H + V + LI
Sbjct: 81 HKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIV 140
Query: 212 TGSADGTVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSSSRSIVYCGSSDGLVNFWE 271
+GS D +V++W + GK K TL V+A+ + S++ S DGL W+
Sbjct: 141 SGSFDESVRIWDVKT-GKCLK-----TLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWD 194
Query: 272 REKQLSHGGVLK------GHKLAVLCLAAAGKLVFSGSADKTICVWRRDGAIHTCLSVLT 325
+ G LK ++ + + GK + + + D T+ +W D + CL T
Sbjct: 195 T----ASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLW--DYSKGKCLKTYT 248
Query: 326 GHTGPVKCL 334
GH C+
Sbjct: 249 GHKNEKYCI 257
Score = 64.7 bits (156), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 49/188 (26%), Positives = 83/188 (44%), Gaps = 20/188 (10%)
Query: 153 HSDAVSCMSLDQDCGLLYTASWDRTFKVWRISDSKCLESVSAHDDAVNSVVSSSEG-LIF 211
HS+ V C + + L+ + S+D + ++W + KCL+++ AH D V++V + +G LI
Sbjct: 123 HSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIV 182
Query: 212 TGSADGTVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSSSRSIVYCGSSDGLVNFWE 271
+ S DG ++W + L + V+ + S + + + D + W+
Sbjct: 183 SSSYDGLCRIWDT-----ASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWD 237
Query: 272 REKQLSHGGVLK---GHKLAVLCLAA-----AGKLVFSGSADKTICVWRRDGAIHTCLSV 323
K G LK GHK C+ A GK + SGS D + +W +
Sbjct: 238 YSK----GKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQ--TKEIVQK 291
Query: 324 LTGHTGPV 331
L GHT V
Sbjct: 292 LQGHTDVV 299
Score = 55.8 bits (133), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 71/285 (24%), Positives = 110/285 (38%), Gaps = 68/285 (23%)
Query: 51 AASKDLLYTGSDSKNIRVW-----KNLKEF---------CGFKASSGLVKAIVISGEKIF 96
++ +LL + SD K +++W K LK C F S L I
Sbjct: 91 SSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNL----------IV 140
Query: 97 TGHQDGKIRVWKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDA 156
+G D +R+W + K TLP HSD
Sbjct: 141 SGSFDESVRIWDV-----KTGKCLKTLPA---------------------------HSDP 168
Query: 157 VSCMSLDQDCGLLYTASWDRTFKVWRISDSKCLESVSAHDDAVNSVVSSSEG--LIFTGS 214
VS + ++D L+ ++S+D ++W + +CL+++ D+ S V S I +
Sbjct: 169 VSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAAT 228
Query: 215 ADGTVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSSSRSIVYCGSSDGLVNFWE-RE 273
D T+K+W + GK K K C V+ + IV GS D LV W +
Sbjct: 229 LDNTLKLWDYSK-GKCLKTYTGHKNEKY-CIFANFSVTGGKWIV-SGSEDNLVYIWNLQT 285
Query: 274 KQLSHGGVLKGHKLAVLCLAAAGKLVFSGSA----DKTICVWRRD 314
K++ L+GH V+ A SA DKTI +W+ D
Sbjct: 286 KEIVQK--LQGHTDVVISTACHPTENIIASAALENDKTIKLWKSD 328
Score = 45.8 bits (107), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 48/192 (25%), Positives = 73/192 (38%), Gaps = 56/192 (29%)
Query: 153 HSDAVSCMSLDQDCGLLYTASWDRTFKVWRISDSKCLESVSAHDDAVNSVV-SSSEGLIF 211
H+ AVS + + L ++S D+ K+W D K +++S H ++ V SS L+
Sbjct: 39 HTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLV 98
Query: 212 TGSADGTVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSSSRSIVYCGSSDGLVNFWE 271
+ S D T+K+W VSS + +
Sbjct: 99 SASDDKTLKIWD---------------------------VSSGKCL-------------- 117
Query: 272 REKQLSHGGVLKGHKLAVLC--LAAAGKLVFSGSADKTICVWRRDGAIHTCLSVLTGHTG 329
LKGH V C L+ SGS D+++ +W D CL L H+
Sbjct: 118 --------KTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW--DVKTGKCLKTLPAHSD 167
Query: 330 PVKCLAVEEDRD 341
PV AV +RD
Sbjct: 168 PVS--AVHFNRD 177
>pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel
Histone Mark That Supports Euchromatin Maintenance
Length = 318
Score = 64.7 bits (156), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 52/189 (27%), Positives = 87/189 (46%), Gaps = 19/189 (10%)
Query: 153 HSDAVSCMSLDQDCGLLYTASWDRTFKVWRISDSKCLESVSAHDDAVNSV-VSSSEGLIF 211
H +S ++ D LL +AS D+T K+W +S KCL+++ H + V + LI
Sbjct: 70 HKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIV 129
Query: 212 TGSADGTVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSSSRSIVYCGSSDGLVNFWE 271
+GS D +V++W + GK K TL V+A+ + S++ S DGL W+
Sbjct: 130 SGSFDESVRIWDVKT-GKCLK-----TLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWD 183
Query: 272 REKQLSHGGVLK------GHKLAVLCLAAAGKLVFSGSADKTICVWRRDGAIHTCLSVLT 325
+ G LK ++ + + GK + + + D T+ +W D + CL T
Sbjct: 184 T----ASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLW--DYSKGKCLKTYT 237
Query: 326 GHTGPVKCL 334
GH C+
Sbjct: 238 GHKNEKYCI 246
Score = 64.3 bits (155), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 49/188 (26%), Positives = 83/188 (44%), Gaps = 20/188 (10%)
Query: 153 HSDAVSCMSLDQDCGLLYTASWDRTFKVWRISDSKCLESVSAHDDAVNSVVSSSEG-LIF 211
HS+ V C + + L+ + S+D + ++W + KCL+++ AH D V++V + +G LI
Sbjct: 112 HSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIV 171
Query: 212 TGSADGTVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSSSRSIVYCGSSDGLVNFWE 271
+ S DG ++W + L + V+ + S + + + D + W+
Sbjct: 172 SSSYDGLCRIWDT-----ASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWD 226
Query: 272 REKQLSHGGVLK---GHKLAVLCLAA-----AGKLVFSGSADKTICVWRRDGAIHTCLSV 323
K G LK GHK C+ A GK + SGS D + +W +
Sbjct: 227 YSK----GKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQ--TKEIVQK 280
Query: 324 LTGHTGPV 331
L GHT V
Sbjct: 281 LQGHTDVV 288
Score = 56.2 bits (134), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 71/285 (24%), Positives = 110/285 (38%), Gaps = 68/285 (23%)
Query: 51 AASKDLLYTGSDSKNIRVW-----KNLKEF---------CGFKASSGLVKAIVISGEKIF 96
++ +LL + SD K +++W K LK C F S L I
Sbjct: 80 SSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNL----------IV 129
Query: 97 TGHQDGKIRVWKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDA 156
+G D +R+W + K TLP HSD
Sbjct: 130 SGSFDESVRIWDV-----KTGKCLKTLPA---------------------------HSDP 157
Query: 157 VSCMSLDQDCGLLYTASWDRTFKVWRISDSKCLESVSAHDDAVNSVVSSSEG--LIFTGS 214
VS + ++D L+ ++S+D ++W + +CL+++ D+ S V S I +
Sbjct: 158 VSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAAT 217
Query: 215 ADGTVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSSSRSIVYCGSSDGLVNFWE-RE 273
D T+K+W + GK K K C V+ + IV GS D LV W +
Sbjct: 218 LDNTLKLWDYSK-GKCLKTYTGHKNEKY-CIFANFSVTGGKWIV-SGSEDNLVYIWNLQT 274
Query: 274 KQLSHGGVLKGHKLAVLCLAAAGKLVFSGSA----DKTICVWRRD 314
K++ L+GH V+ A SA DKTI +W+ D
Sbjct: 275 KEIVQK--LQGHTDVVISTACHPTENIIASAALENDKTIKLWKSD 317
Score = 45.8 bits (107), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 48/192 (25%), Positives = 73/192 (38%), Gaps = 56/192 (29%)
Query: 153 HSDAVSCMSLDQDCGLLYTASWDRTFKVWRISDSKCLESVSAHDDAVNSVV-SSSEGLIF 211
H+ AVS + + L ++S D+ K+W D K +++S H ++ V SS L+
Sbjct: 28 HTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLV 87
Query: 212 TGSADGTVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSSSRSIVYCGSSDGLVNFWE 271
+ S D T+K+W VSS + +
Sbjct: 88 SASDDKTLKIWD---------------------------VSSGKCL-------------- 106
Query: 272 REKQLSHGGVLKGHKLAVLC--LAAAGKLVFSGSADKTICVWRRDGAIHTCLSVLTGHTG 329
LKGH V C L+ SGS D+++ +W D CL L H+
Sbjct: 107 --------KTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW--DVKTGKCLKTLPAHSD 156
Query: 330 PVKCLAVEEDRD 341
PV AV +RD
Sbjct: 157 PVS--AVHFNRD 166
>pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|C Chain C, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|D Chain D, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|4IA9|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 In Complex
With 2-
Chloro-4-Fluoro-3-Methyl-N-[2-(4-Methylpiperazin-1-Yl)-
5- Nitrophenyl]benzamide
Length = 312
Score = 64.7 bits (156), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 52/189 (27%), Positives = 87/189 (46%), Gaps = 19/189 (10%)
Query: 153 HSDAVSCMSLDQDCGLLYTASWDRTFKVWRISDSKCLESVSAHDDAVNSV-VSSSEGLIF 211
H +S ++ D LL +AS D+T K+W +S KCL+++ H + V + LI
Sbjct: 64 HKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIV 123
Query: 212 TGSADGTVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSSSRSIVYCGSSDGLVNFWE 271
+GS D +V++W + GK K TL V+A+ + S++ S DGL W+
Sbjct: 124 SGSFDESVRIWDVKT-GKCLK-----TLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWD 177
Query: 272 REKQLSHGGVLK------GHKLAVLCLAAAGKLVFSGSADKTICVWRRDGAIHTCLSVLT 325
+ G LK ++ + + GK + + + D T+ +W D + CL T
Sbjct: 178 T----ASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLW--DYSKGKCLKTYT 231
Query: 326 GHTGPVKCL 334
GH C+
Sbjct: 232 GHKNEKYCI 240
Score = 64.3 bits (155), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 49/188 (26%), Positives = 83/188 (44%), Gaps = 20/188 (10%)
Query: 153 HSDAVSCMSLDQDCGLLYTASWDRTFKVWRISDSKCLESVSAHDDAVNSVVSSSEG-LIF 211
HS+ V C + + L+ + S+D + ++W + KCL+++ AH D V++V + +G LI
Sbjct: 106 HSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIV 165
Query: 212 TGSADGTVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSSSRSIVYCGSSDGLVNFWE 271
+ S DG ++W + L + V+ + S + + + D + W+
Sbjct: 166 SSSYDGLCRIWDT-----ASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWD 220
Query: 272 REKQLSHGGVLK---GHKLAVLCLAA-----AGKLVFSGSADKTICVWRRDGAIHTCLSV 323
K G LK GHK C+ A GK + SGS D + +W +
Sbjct: 221 YSK----GKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQ--TKEIVQK 274
Query: 324 LTGHTGPV 331
L GHT V
Sbjct: 275 LQGHTDVV 282
Score = 55.8 bits (133), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 71/285 (24%), Positives = 110/285 (38%), Gaps = 68/285 (23%)
Query: 51 AASKDLLYTGSDSKNIRVW-----KNLKEF---------CGFKASSGLVKAIVISGEKIF 96
++ +LL + SD K +++W K LK C F S L I
Sbjct: 74 SSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNL----------IV 123
Query: 97 TGHQDGKIRVWKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDA 156
+G D +R+W + K TLP HSD
Sbjct: 124 SGSFDESVRIWDV-----KTGKCLKTLPA---------------------------HSDP 151
Query: 157 VSCMSLDQDCGLLYTASWDRTFKVWRISDSKCLESVSAHDDAVNSVVSSSEG--LIFTGS 214
VS + ++D L+ ++S+D ++W + +CL+++ D+ S V S I +
Sbjct: 152 VSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAAT 211
Query: 215 ADGTVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSSSRSIVYCGSSDGLVNFWE-RE 273
D T+K+W + GK K K C V+ + IV GS D LV W +
Sbjct: 212 LDNTLKLWDYSK-GKCLKTYTGHKNEKY-CIFANFSVTGGKWIV-SGSEDNLVYIWNLQT 268
Query: 274 KQLSHGGVLKGHKLAVLCLAAAGKLVFSGSA----DKTICVWRRD 314
K++ L+GH V+ A SA DKTI +W+ D
Sbjct: 269 KEIVQK--LQGHTDVVISTACHPTENIIASAALENDKTIKLWKSD 311
Score = 45.8 bits (107), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 48/192 (25%), Positives = 73/192 (38%), Gaps = 56/192 (29%)
Query: 153 HSDAVSCMSLDQDCGLLYTASWDRTFKVWRISDSKCLESVSAHDDAVNSVV-SSSEGLIF 211
H+ AVS + + L ++S D+ K+W D K +++S H ++ V SS L+
Sbjct: 22 HTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLV 81
Query: 212 TGSADGTVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSSSRSIVYCGSSDGLVNFWE 271
+ S D T+K+W VSS + +
Sbjct: 82 SASDDKTLKIWD---------------------------VSSGKCL-------------- 100
Query: 272 REKQLSHGGVLKGHKLAVLC--LAAAGKLVFSGSADKTICVWRRDGAIHTCLSVLTGHTG 329
LKGH V C L+ SGS D+++ +W D CL L H+
Sbjct: 101 --------KTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW--DVKTGKCLKTLPAHSD 150
Query: 330 PVKCLAVEEDRD 341
PV AV +RD
Sbjct: 151 PVS--AVHFNRD 160
>pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
pdb|2G99|B Chain B, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 308
Score = 64.7 bits (156), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 52/189 (27%), Positives = 87/189 (46%), Gaps = 19/189 (10%)
Query: 153 HSDAVSCMSLDQDCGLLYTASWDRTFKVWRISDSKCLESVSAHDDAVNSV-VSSSEGLIF 211
H +S ++ D LL +AS D+T K+W +S KCL+++ H + V + LI
Sbjct: 60 HKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIV 119
Query: 212 TGSADGTVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSSSRSIVYCGSSDGLVNFWE 271
+GS D +V++W + GK K TL V+A+ + S++ S DGL W+
Sbjct: 120 SGSFDESVRIWDVKT-GKCLK-----TLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWD 173
Query: 272 REKQLSHGGVLK------GHKLAVLCLAAAGKLVFSGSADKTICVWRRDGAIHTCLSVLT 325
+ G LK ++ + + GK + + + D T+ +W D + CL T
Sbjct: 174 T----ASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLW--DYSKGKCLKTYT 227
Query: 326 GHTGPVKCL 334
GH C+
Sbjct: 228 GHKNEKYCI 236
Score = 64.3 bits (155), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 49/188 (26%), Positives = 83/188 (44%), Gaps = 20/188 (10%)
Query: 153 HSDAVSCMSLDQDCGLLYTASWDRTFKVWRISDSKCLESVSAHDDAVNSVVSSSEG-LIF 211
HS+ V C + + L+ + S+D + ++W + KCL+++ AH D V++V + +G LI
Sbjct: 102 HSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIV 161
Query: 212 TGSADGTVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSSSRSIVYCGSSDGLVNFWE 271
+ S DG ++W + L + V+ + S + + + D + W+
Sbjct: 162 SSSYDGLCRIWDT-----ASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWD 216
Query: 272 REKQLSHGGVLK---GHKLAVLCLAA-----AGKLVFSGSADKTICVWRRDGAIHTCLSV 323
K G LK GHK C+ A GK + SGS D + +W +
Sbjct: 217 YSK----GKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQ--TKEIVQK 270
Query: 324 LTGHTGPV 331
L GHT V
Sbjct: 271 LQGHTDVV 278
Score = 56.2 bits (134), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 71/285 (24%), Positives = 110/285 (38%), Gaps = 68/285 (23%)
Query: 51 AASKDLLYTGSDSKNIRVW-----KNLKEF---------CGFKASSGLVKAIVISGEKIF 96
++ +LL + SD K +++W K LK C F S L I
Sbjct: 70 SSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNL----------IV 119
Query: 97 TGHQDGKIRVWKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDA 156
+G D +R+W + K TLP HSD
Sbjct: 120 SGSFDESVRIWDV-----KTGKCLKTLPA---------------------------HSDP 147
Query: 157 VSCMSLDQDCGLLYTASWDRTFKVWRISDSKCLESVSAHDDAVNSVVSSSEG--LIFTGS 214
VS + ++D L+ ++S+D ++W + +CL+++ D+ S V S I +
Sbjct: 148 VSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAAT 207
Query: 215 ADGTVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSSSRSIVYCGSSDGLVNFWE-RE 273
D T+K+W + GK K K C V+ + IV GS D LV W +
Sbjct: 208 LDNTLKLWDYSK-GKCLKTYTGHKNEKY-CIFANFSVTGGKWIV-SGSEDNLVYIWNLQT 264
Query: 274 KQLSHGGVLKGHKLAVLCLAAAGKLVFSGSA----DKTICVWRRD 314
K++ L+GH V+ A SA DKTI +W+ D
Sbjct: 265 KEIVQK--LQGHTDVVISTACHPTENIIASAALENDKTIKLWKSD 307
Score = 45.4 bits (106), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 48/192 (25%), Positives = 73/192 (38%), Gaps = 56/192 (29%)
Query: 153 HSDAVSCMSLDQDCGLLYTASWDRTFKVWRISDSKCLESVSAHDDAVNSVV-SSSEGLIF 211
H+ AVS + + L ++S D+ K+W D K +++S H ++ V SS L+
Sbjct: 18 HTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLV 77
Query: 212 TGSADGTVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSSSRSIVYCGSSDGLVNFWE 271
+ S D T+K+W VSS + +
Sbjct: 78 SASDDKTLKIWD---------------------------VSSGKCL-------------- 96
Query: 272 REKQLSHGGVLKGHKLAVLC--LAAAGKLVFSGSADKTICVWRRDGAIHTCLSVLTGHTG 329
LKGH V C L+ SGS D+++ +W D CL L H+
Sbjct: 97 --------KTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW--DVKTGKCLKTLPAHSD 146
Query: 330 PVKCLAVEEDRD 341
PV AV +RD
Sbjct: 147 PVS--AVHFNRD 156
>pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y)
Length = 315
Score = 64.3 bits (155), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 52/189 (27%), Positives = 87/189 (46%), Gaps = 19/189 (10%)
Query: 153 HSDAVSCMSLDQDCGLLYTASWDRTFKVWRISDSKCLESVSAHDDAVNSV-VSSSEGLIF 211
H +S ++ D LL +AS D+T K+W +S KCL+++ H + V + LI
Sbjct: 67 HKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIV 126
Query: 212 TGSADGTVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSSSRSIVYCGSSDGLVNFWE 271
+GS D +V++W + GK K TL V+A+ + S++ S DGL W+
Sbjct: 127 SGSFDESVRIWDVKT-GKCLK-----TLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWD 180
Query: 272 REKQLSHGGVLK------GHKLAVLCLAAAGKLVFSGSADKTICVWRRDGAIHTCLSVLT 325
+ G LK ++ + + GK + + + D T+ +W D + CL T
Sbjct: 181 T----ASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLW--DYSKGKCLKTYT 234
Query: 326 GHTGPVKCL 334
GH C+
Sbjct: 235 GHKNEKYCI 243
Score = 64.3 bits (155), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 49/188 (26%), Positives = 83/188 (44%), Gaps = 20/188 (10%)
Query: 153 HSDAVSCMSLDQDCGLLYTASWDRTFKVWRISDSKCLESVSAHDDAVNSVVSSSEG-LIF 211
HS+ V C + + L+ + S+D + ++W + KCL+++ AH D V++V + +G LI
Sbjct: 109 HSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIV 168
Query: 212 TGSADGTVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSSSRSIVYCGSSDGLVNFWE 271
+ S DG ++W + L + V+ + S + + + D + W+
Sbjct: 169 SSSYDGLCRIWDT-----ASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWD 223
Query: 272 REKQLSHGGVLK---GHKLAVLCLAA-----AGKLVFSGSADKTICVWRRDGAIHTCLSV 323
K G LK GHK C+ A GK + SGS D + +W +
Sbjct: 224 YSK----GKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQ--TKEIVQK 277
Query: 324 LTGHTGPV 331
L GHT V
Sbjct: 278 LQGHTDVV 285
Score = 52.8 bits (125), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 70/285 (24%), Positives = 110/285 (38%), Gaps = 68/285 (23%)
Query: 51 AASKDLLYTGSDSKNIRVW-----KNLKEF---------CGFKASSGLVKAIVISGEKIF 96
++ +LL + SD K +++W K LK C F S L I
Sbjct: 77 SSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNL----------IV 126
Query: 97 TGHQDGKIRVWKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDA 156
+G D +R+W + K TLP HSD
Sbjct: 127 SGSFDESVRIWDV-----KTGKCLKTLPA---------------------------HSDP 154
Query: 157 VSCMSLDQDCGLLYTASWDRTFKVWRISDSKCLESVSAHDDAVNSVVSSSEG--LIFTGS 214
VS + ++D L+ ++S+D ++W + +CL+++ D+ S V S I +
Sbjct: 155 VSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAAT 214
Query: 215 ADGTVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSSSRSIVYCGSSDGLVNFWE-RE 273
D T+K+W + GK K K C V+ + IV GS D LV W +
Sbjct: 215 LDNTLKLWDYSK-GKCLKTYTGHKNEKY-CIFANFSVTGGKWIV-SGSEDNLVYIWNLQT 271
Query: 274 KQLSHGGVLKGHKLAVLCLAAAGKLVFSGSA----DKTICVWRRD 314
K++ L+GH V+ A SA DKTI +++ D
Sbjct: 272 KEIVQK--LQGHTDVVISTACHPTENIIASAALENDKTIKLYKSD 314
Score = 45.8 bits (107), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 48/192 (25%), Positives = 73/192 (38%), Gaps = 56/192 (29%)
Query: 153 HSDAVSCMSLDQDCGLLYTASWDRTFKVWRISDSKCLESVSAHDDAVNSVV-SSSEGLIF 211
H+ AVS + + L ++S D+ K+W D K +++S H ++ V SS L+
Sbjct: 25 HTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLV 84
Query: 212 TGSADGTVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSSSRSIVYCGSSDGLVNFWE 271
+ S D T+K+W VSS + +
Sbjct: 85 SASDDKTLKIWD---------------------------VSSGKCL-------------- 103
Query: 272 REKQLSHGGVLKGHKLAVLC--LAAAGKLVFSGSADKTICVWRRDGAIHTCLSVLTGHTG 329
LKGH V C L+ SGS D+++ +W D CL L H+
Sbjct: 104 --------KTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW--DVKTGKCLKTLPAHSD 153
Query: 330 PVKCLAVEEDRD 341
PV AV +RD
Sbjct: 154 PVS--AVHFNRD 163
>pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H68|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|3EG6|A Chain A, Structure Of Wdr5 Bound To Mll1 Peptide
pdb|4ERQ|A Chain A, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|B Chain B, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|C Chain C, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERY|A Chain A, X-Ray Structure Of Wdr5-Mll3 Win Motif Peptide Binary
Complex
pdb|4ERZ|A Chain A, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|B Chain B, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|C Chain C, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ES0|A Chain A, X-Ray Structure Of Wdr5-Setd1b Win Motif Peptide Binary
Complex
pdb|4ESG|A Chain A, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4ESG|B Chain B, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4EWR|A Chain A, X-Ray Structure Of Wdr5-Setd1a Win Motif Peptide Binary
Complex
Length = 312
Score = 64.3 bits (155), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 52/189 (27%), Positives = 87/189 (46%), Gaps = 19/189 (10%)
Query: 153 HSDAVSCMSLDQDCGLLYTASWDRTFKVWRISDSKCLESVSAHDDAVNSV-VSSSEGLIF 211
H +S ++ D LL +AS D+T K+W +S KCL+++ H + V + LI
Sbjct: 64 HKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIV 123
Query: 212 TGSADGTVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSSSRSIVYCGSSDGLVNFWE 271
+GS D +V++W + GK K TL V+A+ + S++ S DGL W+
Sbjct: 124 SGSFDESVRIWDVKT-GKCLK-----TLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWD 177
Query: 272 REKQLSHGGVLK------GHKLAVLCLAAAGKLVFSGSADKTICVWRRDGAIHTCLSVLT 325
+ G LK ++ + + GK + + + D T+ +W D + CL T
Sbjct: 178 T----ASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLW--DYSKGKCLKTYT 231
Query: 326 GHTGPVKCL 334
GH C+
Sbjct: 232 GHKNEKYCI 240
Score = 64.3 bits (155), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 49/188 (26%), Positives = 83/188 (44%), Gaps = 20/188 (10%)
Query: 153 HSDAVSCMSLDQDCGLLYTASWDRTFKVWRISDSKCLESVSAHDDAVNSVVSSSEG-LIF 211
HS+ V C + + L+ + S+D + ++W + KCL+++ AH D V++V + +G LI
Sbjct: 106 HSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIV 165
Query: 212 TGSADGTVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSSSRSIVYCGSSDGLVNFWE 271
+ S DG ++W + L + V+ + S + + + D + W+
Sbjct: 166 SSSYDGLCRIWDT-----ASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWD 220
Query: 272 REKQLSHGGVLK---GHKLAVLCLAA-----AGKLVFSGSADKTICVWRRDGAIHTCLSV 323
K G LK GHK C+ A GK + SGS D + +W +
Sbjct: 221 YSK----GKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQ--TKEIVQK 274
Query: 324 LTGHTGPV 331
L GHT V
Sbjct: 275 LQGHTDVV 282
Score = 55.8 bits (133), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 71/285 (24%), Positives = 110/285 (38%), Gaps = 68/285 (23%)
Query: 51 AASKDLLYTGSDSKNIRVW-----KNLKEF---------CGFKASSGLVKAIVISGEKIF 96
++ +LL + SD K +++W K LK C F S L I
Sbjct: 74 SSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNL----------IV 123
Query: 97 TGHQDGKIRVWKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDA 156
+G D +R+W + K TLP HSD
Sbjct: 124 SGSFDESVRIWDV-----KTGKCLKTLPA---------------------------HSDP 151
Query: 157 VSCMSLDQDCGLLYTASWDRTFKVWRISDSKCLESVSAHDDAVNSVVSSSEG--LIFTGS 214
VS + ++D L+ ++S+D ++W + +CL+++ D+ S V S I +
Sbjct: 152 VSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAAT 211
Query: 215 ADGTVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSSSRSIVYCGSSDGLVNFWE-RE 273
D T+K+W + GK K K C V+ + IV GS D LV W +
Sbjct: 212 LDNTLKLWDYSK-GKCLKTYTGHKNEKY-CIFANFSVTGGKWIV-SGSEDNLVYIWNLQT 268
Query: 274 KQLSHGGVLKGHKLAVLCLAAAGKLVFSGSA----DKTICVWRRD 314
K++ L+GH V+ A SA DKTI +W+ D
Sbjct: 269 KEIVQK--LQGHTDVVISTACHPTENIIASAALENDKTIKLWKSD 311
Score = 45.4 bits (106), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 48/192 (25%), Positives = 73/192 (38%), Gaps = 56/192 (29%)
Query: 153 HSDAVSCMSLDQDCGLLYTASWDRTFKVWRISDSKCLESVSAHDDAVNSVV-SSSEGLIF 211
H+ AVS + + L ++S D+ K+W D K +++S H ++ V SS L+
Sbjct: 22 HTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLV 81
Query: 212 TGSADGTVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSSSRSIVYCGSSDGLVNFWE 271
+ S D T+K+W VSS + +
Sbjct: 82 SASDDKTLKIWD---------------------------VSSGKCL-------------- 100
Query: 272 REKQLSHGGVLKGHKLAVLC--LAAAGKLVFSGSADKTICVWRRDGAIHTCLSVLTGHTG 329
LKGH V C L+ SGS D+++ +W D CL L H+
Sbjct: 101 --------KTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW--DVKTGKCLKTLPAHSD 150
Query: 330 PVKCLAVEEDRD 341
PV AV +RD
Sbjct: 151 PVS--AVHFNRD 160
>pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX
pdb|2H14|A Chain A, Crystal Of Wdr5 (Apo-Form)
pdb|3P4F|A Chain A, Structural And Biochemical Insights Into Mll1 Core Complex
Assembly And Regulation
Length = 317
Score = 64.3 bits (155), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 52/189 (27%), Positives = 87/189 (46%), Gaps = 19/189 (10%)
Query: 153 HSDAVSCMSLDQDCGLLYTASWDRTFKVWRISDSKCLESVSAHDDAVNSV-VSSSEGLIF 211
H +S ++ D LL +AS D+T K+W +S KCL+++ H + V + LI
Sbjct: 69 HKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIV 128
Query: 212 TGSADGTVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSSSRSIVYCGSSDGLVNFWE 271
+GS D +V++W + GK K TL V+A+ + S++ S DGL W+
Sbjct: 129 SGSFDESVRIWDVKT-GKCLK-----TLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWD 182
Query: 272 REKQLSHGGVLK------GHKLAVLCLAAAGKLVFSGSADKTICVWRRDGAIHTCLSVLT 325
+ G LK ++ + + GK + + + D T+ +W D + CL T
Sbjct: 183 T----ASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLW--DYSKGKCLKTYT 236
Query: 326 GHTGPVKCL 334
GH C+
Sbjct: 237 GHKNEKYCI 245
Score = 64.3 bits (155), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 49/188 (26%), Positives = 83/188 (44%), Gaps = 20/188 (10%)
Query: 153 HSDAVSCMSLDQDCGLLYTASWDRTFKVWRISDSKCLESVSAHDDAVNSVVSSSEG-LIF 211
HS+ V C + + L+ + S+D + ++W + KCL+++ AH D V++V + +G LI
Sbjct: 111 HSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIV 170
Query: 212 TGSADGTVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSSSRSIVYCGSSDGLVNFWE 271
+ S DG ++W + L + V+ + S + + + D + W+
Sbjct: 171 SSSYDGLCRIWDT-----ASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWD 225
Query: 272 REKQLSHGGVLK---GHKLAVLCLAA-----AGKLVFSGSADKTICVWRRDGAIHTCLSV 323
K G LK GHK C+ A GK + SGS D + +W +
Sbjct: 226 YSK----GKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQ--TKEIVQK 279
Query: 324 LTGHTGPV 331
L GHT V
Sbjct: 280 LQGHTDVV 287
Score = 55.8 bits (133), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 71/285 (24%), Positives = 110/285 (38%), Gaps = 68/285 (23%)
Query: 51 AASKDLLYTGSDSKNIRVW-----KNLKEF---------CGFKASSGLVKAIVISGEKIF 96
++ +LL + SD K +++W K LK C F S L I
Sbjct: 79 SSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNL----------IV 128
Query: 97 TGHQDGKIRVWKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDA 156
+G D +R+W + K TLP HSD
Sbjct: 129 SGSFDESVRIWDV-----KTGKCLKTLPA---------------------------HSDP 156
Query: 157 VSCMSLDQDCGLLYTASWDRTFKVWRISDSKCLESVSAHDDAVNSVVSSSEG--LIFTGS 214
VS + ++D L+ ++S+D ++W + +CL+++ D+ S V S I +
Sbjct: 157 VSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAAT 216
Query: 215 ADGTVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSSSRSIVYCGSSDGLVNFWE-RE 273
D T+K+W + GK K K C V+ + IV GS D LV W +
Sbjct: 217 LDNTLKLWDYSK-GKCLKTYTGHKNEKY-CIFANFSVTGGKWIV-SGSEDNLVYIWNLQT 273
Query: 274 KQLSHGGVLKGHKLAVLCLAAAGKLVFSGSA----DKTICVWRRD 314
K++ L+GH V+ A SA DKTI +W+ D
Sbjct: 274 KEIVQK--LQGHTDVVISTACHPTENIIASAALENDKTIKLWKSD 316
Score = 45.8 bits (107), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 48/192 (25%), Positives = 73/192 (38%), Gaps = 56/192 (29%)
Query: 153 HSDAVSCMSLDQDCGLLYTASWDRTFKVWRISDSKCLESVSAHDDAVNSVV-SSSEGLIF 211
H+ AVS + + L ++S D+ K+W D K +++S H ++ V SS L+
Sbjct: 27 HTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLV 86
Query: 212 TGSADGTVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSSSRSIVYCGSSDGLVNFWE 271
+ S D T+K+W VSS + +
Sbjct: 87 SASDDKTLKIWD---------------------------VSSGKCL-------------- 105
Query: 272 REKQLSHGGVLKGHKLAVLC--LAAAGKLVFSGSADKTICVWRRDGAIHTCLSVLTGHTG 329
LKGH V C L+ SGS D+++ +W D CL L H+
Sbjct: 106 --------KTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW--DVKTGKCLKTLPAHSD 155
Query: 330 PVKCLAVEEDRD 341
PV AV +RD
Sbjct: 156 PVS--AVHFNRD 165
>pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9M|C Chain C, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9N|A Chain A, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2H9N|C Chain C, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2O9K|A Chain A, Wdr5 In Complex With Dimethylated H3k4 Peptide
pdb|2O9K|C Chain C, Wdr5 In Complex With Dimethylated H3k4 Peptide
Length = 313
Score = 64.3 bits (155), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 52/189 (27%), Positives = 87/189 (46%), Gaps = 19/189 (10%)
Query: 153 HSDAVSCMSLDQDCGLLYTASWDRTFKVWRISDSKCLESVSAHDDAVNSV-VSSSEGLIF 211
H +S ++ D LL +AS D+T K+W +S KCL+++ H + V + LI
Sbjct: 65 HKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIV 124
Query: 212 TGSADGTVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSSSRSIVYCGSSDGLVNFWE 271
+GS D +V++W + GK K TL V+A+ + S++ S DGL W+
Sbjct: 125 SGSFDESVRIWDVKT-GKCLK-----TLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWD 178
Query: 272 REKQLSHGGVLK------GHKLAVLCLAAAGKLVFSGSADKTICVWRRDGAIHTCLSVLT 325
+ G LK ++ + + GK + + + D T+ +W D + CL T
Sbjct: 179 T----ASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLW--DYSKGKCLKTYT 232
Query: 326 GHTGPVKCL 334
GH C+
Sbjct: 233 GHKNEKYCI 241
Score = 64.3 bits (155), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 49/188 (26%), Positives = 83/188 (44%), Gaps = 20/188 (10%)
Query: 153 HSDAVSCMSLDQDCGLLYTASWDRTFKVWRISDSKCLESVSAHDDAVNSVVSSSEG-LIF 211
HS+ V C + + L+ + S+D + ++W + KCL+++ AH D V++V + +G LI
Sbjct: 107 HSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIV 166
Query: 212 TGSADGTVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSSSRSIVYCGSSDGLVNFWE 271
+ S DG ++W + L + V+ + S + + + D + W+
Sbjct: 167 SSSYDGLCRIWDT-----ASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWD 221
Query: 272 REKQLSHGGVLK---GHKLAVLCLAA-----AGKLVFSGSADKTICVWRRDGAIHTCLSV 323
K G LK GHK C+ A GK + SGS D + +W +
Sbjct: 222 YSK----GKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQ--TKEIVQK 275
Query: 324 LTGHTGPV 331
L GHT V
Sbjct: 276 LQGHTDVV 283
Score = 55.8 bits (133), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 71/285 (24%), Positives = 110/285 (38%), Gaps = 68/285 (23%)
Query: 51 AASKDLLYTGSDSKNIRVW-----KNLKEF---------CGFKASSGLVKAIVISGEKIF 96
++ +LL + SD K +++W K LK C F S L I
Sbjct: 75 SSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNL----------IV 124
Query: 97 TGHQDGKIRVWKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDA 156
+G D +R+W + K TLP HSD
Sbjct: 125 SGSFDESVRIWDV-----KTGKCLKTLPA---------------------------HSDP 152
Query: 157 VSCMSLDQDCGLLYTASWDRTFKVWRISDSKCLESVSAHDDAVNSVVSSSEG--LIFTGS 214
VS + ++D L+ ++S+D ++W + +CL+++ D+ S V S I +
Sbjct: 153 VSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAAT 212
Query: 215 ADGTVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSSSRSIVYCGSSDGLVNFWE-RE 273
D T+K+W + GK K K C V+ + IV GS D LV W +
Sbjct: 213 LDNTLKLWDYSK-GKCLKTYTGHKNEKY-CIFANFSVTGGKWIV-SGSEDNLVYIWNLQT 269
Query: 274 KQLSHGGVLKGHKLAVLCLAAAGKLVFSGSA----DKTICVWRRD 314
K++ L+GH V+ A SA DKTI +W+ D
Sbjct: 270 KEIVQK--LQGHTDVVISTACHPTENIIASAALENDKTIKLWKSD 312
Score = 45.4 bits (106), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 48/192 (25%), Positives = 73/192 (38%), Gaps = 56/192 (29%)
Query: 153 HSDAVSCMSLDQDCGLLYTASWDRTFKVWRISDSKCLESVSAHDDAVNSVV-SSSEGLIF 211
H+ AVS + + L ++S D+ K+W D K +++S H ++ V SS L+
Sbjct: 23 HTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLV 82
Query: 212 TGSADGTVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSSSRSIVYCGSSDGLVNFWE 271
+ S D T+K+W VSS + +
Sbjct: 83 SASDDKTLKIWD---------------------------VSSGKCL-------------- 101
Query: 272 REKQLSHGGVLKGHKLAVLC--LAAAGKLVFSGSADKTICVWRRDGAIHTCLSVLTGHTG 329
LKGH V C L+ SGS D+++ +W D CL L H+
Sbjct: 102 --------KTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW--DVKTGKCLKTLPAHSD 151
Query: 330 PVKCLAVEEDRD 341
PV AV +RD
Sbjct: 152 PVS--AVHFNRD 161
>pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 311
Score = 64.3 bits (155), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 52/189 (27%), Positives = 87/189 (46%), Gaps = 19/189 (10%)
Query: 153 HSDAVSCMSLDQDCGLLYTASWDRTFKVWRISDSKCLESVSAHDDAVNSV-VSSSEGLIF 211
H +S ++ D LL +AS D+T K+W +S KCL+++ H + V + LI
Sbjct: 63 HKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIV 122
Query: 212 TGSADGTVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSSSRSIVYCGSSDGLVNFWE 271
+GS D +V++W + GK K TL V+A+ + S++ S DGL W+
Sbjct: 123 SGSFDESVRIWDVKT-GKCLK-----TLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWD 176
Query: 272 REKQLSHGGVLK------GHKLAVLCLAAAGKLVFSGSADKTICVWRRDGAIHTCLSVLT 325
+ G LK ++ + + GK + + + D T+ +W D + CL T
Sbjct: 177 T----ASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLW--DYSKGKCLKTYT 230
Query: 326 GHTGPVKCL 334
GH C+
Sbjct: 231 GHKNEKYCI 239
Score = 64.3 bits (155), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 49/188 (26%), Positives = 83/188 (44%), Gaps = 20/188 (10%)
Query: 153 HSDAVSCMSLDQDCGLLYTASWDRTFKVWRISDSKCLESVSAHDDAVNSVVSSSEG-LIF 211
HS+ V C + + L+ + S+D + ++W + KCL+++ AH D V++V + +G LI
Sbjct: 105 HSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIV 164
Query: 212 TGSADGTVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSSSRSIVYCGSSDGLVNFWE 271
+ S DG ++W + L + V+ + S + + + D + W+
Sbjct: 165 SSSYDGLCRIWDT-----ASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWD 219
Query: 272 REKQLSHGGVLK---GHKLAVLCLAA-----AGKLVFSGSADKTICVWRRDGAIHTCLSV 323
K G LK GHK C+ A GK + SGS D + +W +
Sbjct: 220 YSK----GKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQ--TKEIVQK 273
Query: 324 LTGHTGPV 331
L GHT V
Sbjct: 274 LQGHTDVV 281
Score = 55.8 bits (133), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 71/285 (24%), Positives = 110/285 (38%), Gaps = 68/285 (23%)
Query: 51 AASKDLLYTGSDSKNIRVW-----KNLKEF---------CGFKASSGLVKAIVISGEKIF 96
++ +LL + SD K +++W K LK C F S L I
Sbjct: 73 SSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNL----------IV 122
Query: 97 TGHQDGKIRVWKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDA 156
+G D +R+W + K TLP HSD
Sbjct: 123 SGSFDESVRIWDV-----KTGKCLKTLPA---------------------------HSDP 150
Query: 157 VSCMSLDQDCGLLYTASWDRTFKVWRISDSKCLESVSAHDDAVNSVVSSSEG--LIFTGS 214
VS + ++D L+ ++S+D ++W + +CL+++ D+ S V S I +
Sbjct: 151 VSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAAT 210
Query: 215 ADGTVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSSSRSIVYCGSSDGLVNFWE-RE 273
D T+K+W + GK K K C V+ + IV GS D LV W +
Sbjct: 211 LDNTLKLWDYSK-GKCLKTYTGHKNEKY-CIFANFSVTGGKWIV-SGSEDNLVYIWNLQT 267
Query: 274 KQLSHGGVLKGHKLAVLCLAAAGKLVFSGSA----DKTICVWRRD 314
K++ L+GH V+ A SA DKTI +W+ D
Sbjct: 268 KEIVQK--LQGHTDVVISTACHPTENIIASAALENDKTIKLWKSD 310
Score = 45.4 bits (106), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 48/192 (25%), Positives = 73/192 (38%), Gaps = 56/192 (29%)
Query: 153 HSDAVSCMSLDQDCGLLYTASWDRTFKVWRISDSKCLESVSAHDDAVNSVV-SSSEGLIF 211
H+ AVS + + L ++S D+ K+W D K +++S H ++ V SS L+
Sbjct: 21 HTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLV 80
Query: 212 TGSADGTVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSSSRSIVYCGSSDGLVNFWE 271
+ S D T+K+W VSS + +
Sbjct: 81 SASDDKTLKIWD---------------------------VSSGKCL-------------- 99
Query: 272 REKQLSHGGVLKGHKLAVLC--LAAAGKLVFSGSADKTICVWRRDGAIHTCLSVLTGHTG 329
LKGH V C L+ SGS D+++ +W D CL L H+
Sbjct: 100 --------KTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW--DVKTGKCLKTLPAHSD 149
Query: 330 PVKCLAVEEDRD 341
PV AV +RD
Sbjct: 150 PVS--AVHFNRD 159
>pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3PSL|B Chain B, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3UVK|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll2
pdb|3UVL|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll3
pdb|3UVM|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll4
pdb|3UVN|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVN|C Chain C, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVO|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1b
Length = 318
Score = 64.3 bits (155), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 52/189 (27%), Positives = 87/189 (46%), Gaps = 19/189 (10%)
Query: 153 HSDAVSCMSLDQDCGLLYTASWDRTFKVWRISDSKCLESVSAHDDAVNSV-VSSSEGLIF 211
H +S ++ D LL +AS D+T K+W +S KCL+++ H + V + LI
Sbjct: 70 HKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIV 129
Query: 212 TGSADGTVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSSSRSIVYCGSSDGLVNFWE 271
+GS D +V++W + GK K TL V+A+ + S++ S DGL W+
Sbjct: 130 SGSFDESVRIWDVKT-GKCLK-----TLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWD 183
Query: 272 REKQLSHGGVLK------GHKLAVLCLAAAGKLVFSGSADKTICVWRRDGAIHTCLSVLT 325
+ G LK ++ + + GK + + + D T+ +W D + CL T
Sbjct: 184 T----ASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLW--DYSKGKCLKTYT 237
Query: 326 GHTGPVKCL 334
GH C+
Sbjct: 238 GHKNEKYCI 246
Score = 64.3 bits (155), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 49/188 (26%), Positives = 83/188 (44%), Gaps = 20/188 (10%)
Query: 153 HSDAVSCMSLDQDCGLLYTASWDRTFKVWRISDSKCLESVSAHDDAVNSVVSSSEG-LIF 211
HS+ V C + + L+ + S+D + ++W + KCL+++ AH D V++V + +G LI
Sbjct: 112 HSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIV 171
Query: 212 TGSADGTVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSSSRSIVYCGSSDGLVNFWE 271
+ S DG ++W + L + V+ + S + + + D + W+
Sbjct: 172 SSSYDGLCRIWDT-----ASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWD 226
Query: 272 REKQLSHGGVLK---GHKLAVLCLAA-----AGKLVFSGSADKTICVWRRDGAIHTCLSV 323
K G LK GHK C+ A GK + SGS D + +W +
Sbjct: 227 YSK----GKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQ--TKEIVQK 280
Query: 324 LTGHTGPV 331
L GHT V
Sbjct: 281 LQGHTDVV 288
Score = 55.8 bits (133), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 71/285 (24%), Positives = 110/285 (38%), Gaps = 68/285 (23%)
Query: 51 AASKDLLYTGSDSKNIRVW-----KNLKEF---------CGFKASSGLVKAIVISGEKIF 96
++ +LL + SD K +++W K LK C F S L I
Sbjct: 80 SSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNL----------IV 129
Query: 97 TGHQDGKIRVWKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDA 156
+G D +R+W + K TLP HSD
Sbjct: 130 SGSFDESVRIWDV-----KTGKCLKTLPA---------------------------HSDP 157
Query: 157 VSCMSLDQDCGLLYTASWDRTFKVWRISDSKCLESVSAHDDAVNSVVSSSEG--LIFTGS 214
VS + ++D L+ ++S+D ++W + +CL+++ D+ S V S I +
Sbjct: 158 VSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAAT 217
Query: 215 ADGTVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSSSRSIVYCGSSDGLVNFWE-RE 273
D T+K+W + GK K K C V+ + IV GS D LV W +
Sbjct: 218 LDNTLKLWDYSK-GKCLKTYTGHKNEKY-CIFANFSVTGGKWIV-SGSEDNLVYIWNLQT 274
Query: 274 KQLSHGGVLKGHKLAVLCLAAAGKLVFSGSA----DKTICVWRRD 314
K++ L+GH V+ A SA DKTI +W+ D
Sbjct: 275 KEIVQK--LQGHTDVVISTACHPTENIIASAALENDKTIKLWKSD 317
Score = 45.4 bits (106), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 48/192 (25%), Positives = 73/192 (38%), Gaps = 56/192 (29%)
Query: 153 HSDAVSCMSLDQDCGLLYTASWDRTFKVWRISDSKCLESVSAHDDAVNSVV-SSSEGLIF 211
H+ AVS + + L ++S D+ K+W D K +++S H ++ V SS L+
Sbjct: 28 HTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLV 87
Query: 212 TGSADGTVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSSSRSIVYCGSSDGLVNFWE 271
+ S D T+K+W VSS + +
Sbjct: 88 SASDDKTLKIWD---------------------------VSSGKCL-------------- 106
Query: 272 REKQLSHGGVLKGHKLAVLC--LAAAGKLVFSGSADKTICVWRRDGAIHTCLSVLTGHTG 329
LKGH V C L+ SGS D+++ +W D CL L H+
Sbjct: 107 --------KTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW--DVKTGKCLKTLPAHSD 156
Query: 330 PVKCLAVEEDRD 341
PV AV +RD
Sbjct: 157 PVS--AVHFNRD 166
>pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f)
Length = 315
Score = 64.3 bits (155), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 52/189 (27%), Positives = 87/189 (46%), Gaps = 19/189 (10%)
Query: 153 HSDAVSCMSLDQDCGLLYTASWDRTFKVWRISDSKCLESVSAHDDAVNSV-VSSSEGLIF 211
H +S ++ D LL +AS D+T K+W +S KCL+++ H + V + LI
Sbjct: 67 HKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIV 126
Query: 212 TGSADGTVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSSSRSIVYCGSSDGLVNFWE 271
+GS D +V++W + GK K TL V+A+ + S++ S DGL W+
Sbjct: 127 SGSFDESVRIWDVKT-GKCLK-----TLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWD 180
Query: 272 REKQLSHGGVLK------GHKLAVLCLAAAGKLVFSGSADKTICVWRRDGAIHTCLSVLT 325
+ G LK ++ + + GK + + + D T+ +W D + CL T
Sbjct: 181 T----ASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLW--DYSKGKCLKTYT 234
Query: 326 GHTGPVKCL 334
GH C+
Sbjct: 235 GHKNEKYCI 243
Score = 64.3 bits (155), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 49/188 (26%), Positives = 83/188 (44%), Gaps = 20/188 (10%)
Query: 153 HSDAVSCMSLDQDCGLLYTASWDRTFKVWRISDSKCLESVSAHDDAVNSVVSSSEG-LIF 211
HS+ V C + + L+ + S+D + ++W + KCL+++ AH D V++V + +G LI
Sbjct: 109 HSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIV 168
Query: 212 TGSADGTVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSSSRSIVYCGSSDGLVNFWE 271
+ S DG ++W + L + V+ + S + + + D + W+
Sbjct: 169 SSSYDGLCRIWDT-----ASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWD 223
Query: 272 REKQLSHGGVLK---GHKLAVLCLAA-----AGKLVFSGSADKTICVWRRDGAIHTCLSV 323
K G LK GHK C+ A GK + SGS D + +W +
Sbjct: 224 YSK----GKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQ--TKEIVQK 277
Query: 324 LTGHTGPV 331
L GHT V
Sbjct: 278 LQGHTDVV 285
Score = 52.0 bits (123), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 70/285 (24%), Positives = 110/285 (38%), Gaps = 68/285 (23%)
Query: 51 AASKDLLYTGSDSKNIRVW-----KNLKEF---------CGFKASSGLVKAIVISGEKIF 96
++ +LL + SD K +++W K LK C F S L I
Sbjct: 77 SSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNL----------IV 126
Query: 97 TGHQDGKIRVWKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDA 156
+G D +R+W + K TLP HSD
Sbjct: 127 SGSFDESVRIWDV-----KTGKCLKTLPA---------------------------HSDP 154
Query: 157 VSCMSLDQDCGLLYTASWDRTFKVWRISDSKCLESVSAHDDAVNSVVSSSEG--LIFTGS 214
VS + ++D L+ ++S+D ++W + +CL+++ D+ S V S I +
Sbjct: 155 VSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAAT 214
Query: 215 ADGTVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSSSRSIVYCGSSDGLVNFWE-RE 273
D T+K+W + GK K K C V+ + IV GS D LV W +
Sbjct: 215 LDNTLKLWDYSK-GKCLKTYTGHKNEKY-CIFANFSVTGGKWIV-SGSEDNLVYIWNLQT 271
Query: 274 KQLSHGGVLKGHKLAVLCLAAAGKLVFSGSA----DKTICVWRRD 314
K++ L+GH V+ A SA DKTI +++ D
Sbjct: 272 KEIVQK--LQGHTDVVISTACHPTENIIASAALENDKTIKLFKSD 314
Score = 45.8 bits (107), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 48/192 (25%), Positives = 73/192 (38%), Gaps = 56/192 (29%)
Query: 153 HSDAVSCMSLDQDCGLLYTASWDRTFKVWRISDSKCLESVSAHDDAVNSVV-SSSEGLIF 211
H+ AVS + + L ++S D+ K+W D K +++S H ++ V SS L+
Sbjct: 25 HTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLV 84
Query: 212 TGSADGTVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSSSRSIVYCGSSDGLVNFWE 271
+ S D T+K+W VSS + +
Sbjct: 85 SASDDKTLKIWD---------------------------VSSGKCL-------------- 103
Query: 272 REKQLSHGGVLKGHKLAVLC--LAAAGKLVFSGSADKTICVWRRDGAIHTCLSVLTGHTG 329
LKGH V C L+ SGS D+++ +W D CL L H+
Sbjct: 104 --------KTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW--DVKTGKCLKTLPAHSD 153
Query: 330 PVKCLAVEEDRD 341
PV AV +RD
Sbjct: 154 PVS--AVHFNRD 163
>pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a)
Length = 315
Score = 64.3 bits (155), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 52/189 (27%), Positives = 87/189 (46%), Gaps = 19/189 (10%)
Query: 153 HSDAVSCMSLDQDCGLLYTASWDRTFKVWRISDSKCLESVSAHDDAVNSV-VSSSEGLIF 211
H +S ++ D LL +AS D+T K+W +S KCL+++ H + V + LI
Sbjct: 67 HKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIV 126
Query: 212 TGSADGTVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSSSRSIVYCGSSDGLVNFWE 271
+GS D +V++W + GK K TL V+A+ + S++ S DGL W+
Sbjct: 127 SGSFDESVRIWDVKT-GKCLK-----TLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWD 180
Query: 272 REKQLSHGGVLK------GHKLAVLCLAAAGKLVFSGSADKTICVWRRDGAIHTCLSVLT 325
+ G LK ++ + + GK + + + D T+ +W D + CL T
Sbjct: 181 T----ASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLW--DYSKGKCLKTYT 234
Query: 326 GHTGPVKCL 334
GH C+
Sbjct: 235 GHKNEKYCI 243
Score = 63.9 bits (154), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 49/188 (26%), Positives = 83/188 (44%), Gaps = 20/188 (10%)
Query: 153 HSDAVSCMSLDQDCGLLYTASWDRTFKVWRISDSKCLESVSAHDDAVNSVVSSSEG-LIF 211
HS+ V C + + L+ + S+D + ++W + KCL+++ AH D V++V + +G LI
Sbjct: 109 HSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIV 168
Query: 212 TGSADGTVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSSSRSIVYCGSSDGLVNFWE 271
+ S DG ++W + L + V+ + S + + + D + W+
Sbjct: 169 SSSYDGLCRIWDT-----ASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWD 223
Query: 272 REKQLSHGGVLK---GHKLAVLCLAA-----AGKLVFSGSADKTICVWRRDGAIHTCLSV 323
K G LK GHK C+ A GK + SGS D + +W +
Sbjct: 224 YSK----GKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQ--TKEIVQK 277
Query: 324 LTGHTGPV 331
L GHT V
Sbjct: 278 LQGHTDVV 285
Score = 55.1 bits (131), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 71/285 (24%), Positives = 110/285 (38%), Gaps = 68/285 (23%)
Query: 51 AASKDLLYTGSDSKNIRVW-----KNLKEF---------CGFKASSGLVKAIVISGEKIF 96
++ +LL + SD K +++W K LK C F S L I
Sbjct: 77 SSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNL----------IV 126
Query: 97 TGHQDGKIRVWKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDA 156
+G D +R+W + K TLP HSD
Sbjct: 127 SGSFDESVRIWDV-----KTGKCLKTLPA---------------------------HSDP 154
Query: 157 VSCMSLDQDCGLLYTASWDRTFKVWRISDSKCLESVSAHDDAVNSVVSSSEG--LIFTGS 214
VS + ++D L+ ++S+D ++W + +CL+++ D+ S V S I +
Sbjct: 155 VSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAAT 214
Query: 215 ADGTVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSSSRSIVYCGSSDGLVNFWE-RE 273
D T+K+W + GK K K C V+ + IV GS D LV W +
Sbjct: 215 LDNTLKLWDYSK-GKCLKTYTGHKNEKY-CIFANFSVTGGKWIV-SGSEDNLVYIWNLQT 271
Query: 274 KQLSHGGVLKGHKLAVLCLAAAGKLVFSGSA----DKTICVWRRD 314
K++ L+GH V+ A SA DKTI +W+ D
Sbjct: 272 KEIVQK--LQGHTDVVISTACHPTENIIASAALENDKTIKLWKSD 314
Score = 45.1 bits (105), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 48/192 (25%), Positives = 72/192 (37%), Gaps = 56/192 (29%)
Query: 153 HSDAVSCMSLDQDCGLLYTASWDRTFKVWRISDSKCLESVSAHDDAVNSVV-SSSEGLIF 211
H+ AVS + + L +S D+ K+W D K +++S H ++ V SS L+
Sbjct: 25 HTKAVSSVKFSPNGEWLAASSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLV 84
Query: 212 TGSADGTVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSSSRSIVYCGSSDGLVNFWE 271
+ S D T+K+W VSS + +
Sbjct: 85 SASDDKTLKIWD---------------------------VSSGKCL-------------- 103
Query: 272 REKQLSHGGVLKGHKLAVLC--LAAAGKLVFSGSADKTICVWRRDGAIHTCLSVLTGHTG 329
LKGH V C L+ SGS D+++ +W D CL L H+
Sbjct: 104 --------KTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW--DVKTGKCLKTLPAHSD 153
Query: 330 PVKCLAVEEDRD 341
PV AV +RD
Sbjct: 154 PVS--AVHFNRD 163
>pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1
Angstrom
pdb|2CO0|C Chain C, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 62.4 bits (150), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 51/189 (26%), Positives = 87/189 (46%), Gaps = 19/189 (10%)
Query: 153 HSDAVSCMSLDQDCGLLYTASWDRTFKVWRISDSKCLESVSAHDDAVNSV-VSSSEGLIF 211
H +S ++ D LL +AS D+T K+W +S KCL+++ H + V + LI
Sbjct: 67 HKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIV 126
Query: 212 TGSADGTVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSSSRSIVYCGSSDGLVNFWE 271
+GS D +V++W + T L +TL V+A+ + S++ S DGL W+
Sbjct: 127 SGSFDESVRIWDVK-----TGMCL-KTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWD 180
Query: 272 REKQLSHGGVLK------GHKLAVLCLAAAGKLVFSGSADKTICVWRRDGAIHTCLSVLT 325
+ G LK ++ + + GK + + + D T+ +W D + CL T
Sbjct: 181 T----ASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLW--DYSKGKCLKTYT 234
Query: 326 GHTGPVKCL 334
GH C+
Sbjct: 235 GHKNEKYCI 243
Score = 62.0 bits (149), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 48/188 (25%), Positives = 82/188 (43%), Gaps = 20/188 (10%)
Query: 153 HSDAVSCMSLDQDCGLLYTASWDRTFKVWRISDSKCLESVSAHDDAVNSVVSSSEG-LIF 211
HS+ V C + + L+ + S+D + ++W + CL+++ AH D V++V + +G LI
Sbjct: 109 HSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGMCLKTLPAHSDPVSAVHFNRDGSLIV 168
Query: 212 TGSADGTVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSSSRSIVYCGSSDGLVNFWE 271
+ S DG ++W + L + V+ + S + + + D + W+
Sbjct: 169 SSSYDGLCRIWDT-----ASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWD 223
Query: 272 REKQLSHGGVLK---GHKLAVLCLAA-----AGKLVFSGSADKTICVWRRDGAIHTCLSV 323
K G LK GHK C+ A GK + SGS D + +W +
Sbjct: 224 YSK----GKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNMVYIWNLQ--TKEIVQK 277
Query: 324 LTGHTGPV 331
L GHT V
Sbjct: 278 LQGHTDVV 285
Score = 54.7 bits (130), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 70/285 (24%), Positives = 110/285 (38%), Gaps = 68/285 (23%)
Query: 51 AASKDLLYTGSDSKNIRVW-----KNLKEF---------CGFKASSGLVKAIVISGEKIF 96
++ +LL + SD K +++W K LK C F S L I
Sbjct: 77 SSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNL----------IV 126
Query: 97 TGHQDGKIRVWKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDA 156
+G D +R+W + K L TL HSD
Sbjct: 127 SGSFDESVRIWDV--------KTGMCLKTLP------------------------AHSDP 154
Query: 157 VSCMSLDQDCGLLYTASWDRTFKVWRISDSKCLESVSAHDDAVNSVVSSSEG--LIFTGS 214
VS + ++D L+ ++S+D ++W + +CL+++ D+ S V S I +
Sbjct: 155 VSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAAT 214
Query: 215 ADGTVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSSSRSIVYCGSSDGLVNFWE-RE 273
D T+K+W + GK K K C V+ + IV GS D +V W +
Sbjct: 215 LDNTLKLWDYSK-GKCLKTYTGHKNEKY-CIFANFSVTGGKWIV-SGSEDNMVYIWNLQT 271
Query: 274 KQLSHGGVLKGHKLAVLCLAAAGKLVFSGSA----DKTICVWRRD 314
K++ L+GH V+ A SA DKTI +W+ D
Sbjct: 272 KEIVQK--LQGHTDVVISTACHPTENIIASAALENDKTIKLWKSD 314
Score = 45.8 bits (107), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 48/192 (25%), Positives = 73/192 (38%), Gaps = 56/192 (29%)
Query: 153 HSDAVSCMSLDQDCGLLYTASWDRTFKVWRISDSKCLESVSAHDDAVNSVV-SSSEGLIF 211
H+ AVS + + L ++S D+ K+W D K +++S H ++ V SS L+
Sbjct: 25 HTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLV 84
Query: 212 TGSADGTVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSSSRSIVYCGSSDGLVNFWE 271
+ S D T+K+W VSS + +
Sbjct: 85 SASDDKTLKIWD---------------------------VSSGKCL-------------- 103
Query: 272 REKQLSHGGVLKGHKLAVLC--LAAAGKLVFSGSADKTICVWRRDGAIHTCLSVLTGHTG 329
LKGH V C L+ SGS D+++ +W D CL L H+
Sbjct: 104 --------KTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW--DVKTGMCLKTLPAHSD 153
Query: 330 PVKCLAVEEDRD 341
PV AV +RD
Sbjct: 154 PVS--AVHFNRD 163
>pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 61.2 bits (147), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 48/188 (25%), Positives = 82/188 (43%), Gaps = 20/188 (10%)
Query: 153 HSDAVSCMSLDQDCGLLYTASWDRTFKVWRISDSKCLESVSAHDDAVNSVVSSSEG-LIF 211
HS+ V C + + L+ + S+D + ++W + CL+++ AH D V++V + +G LI
Sbjct: 109 HSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGMCLKTLPAHSDPVSAVHFNRDGSLIV 168
Query: 212 TGSADGTVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSSSRSIVYCGSSDGLVNFWE 271
+ S DG ++W + L + V+ + S + + + D + W+
Sbjct: 169 SSSYDGLCRIWDT-----ASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNDLKLWD 223
Query: 272 REKQLSHGGVLK---GHKLAVLCLAA-----AGKLVFSGSADKTICVWRRDGAIHTCLSV 323
K G LK GHK C+ A GK + SGS D + +W +
Sbjct: 224 YSK----GKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNMVYIWNLQ--TKEIVQK 277
Query: 324 LTGHTGPV 331
L GHT V
Sbjct: 278 LQGHTDVV 285
Score = 60.5 bits (145), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 50/189 (26%), Positives = 86/189 (45%), Gaps = 19/189 (10%)
Query: 153 HSDAVSCMSLDQDCGLLYTASWDRTFKVWRISDSKCLESVSAHDDAVNSV-VSSSEGLIF 211
H +S ++ D LL +AS D+T K+W +S KCL+++ H + V + LI
Sbjct: 67 HKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIV 126
Query: 212 TGSADGTVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSSSRSIVYCGSSDGLVNFWE 271
+GS D +V++W + T L +TL V+A+ + S++ S DGL W+
Sbjct: 127 SGSFDESVRIWDVK-----TGMCL-KTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWD 180
Query: 272 REKQLSHGGVLK------GHKLAVLCLAAAGKLVFSGSADKTICVWRRDGAIHTCLSVLT 325
+ G LK ++ + + GK + + + D + +W D + CL T
Sbjct: 181 T----ASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNDLKLW--DYSKGKCLKTYT 234
Query: 326 GHTGPVKCL 334
GH C+
Sbjct: 235 GHKNEKYCI 243
Score = 52.4 bits (124), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 69/285 (24%), Positives = 109/285 (38%), Gaps = 68/285 (23%)
Query: 51 AASKDLLYTGSDSKNIRVW-----KNLKEF---------CGFKASSGLVKAIVISGEKIF 96
++ +LL + SD K +++W K LK C F S L I
Sbjct: 77 SSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNL----------IV 126
Query: 97 TGHQDGKIRVWKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDA 156
+G D +R+W + K L TL HSD
Sbjct: 127 SGSFDESVRIWDV--------KTGMCLKTLP------------------------AHSDP 154
Query: 157 VSCMSLDQDCGLLYTASWDRTFKVWRISDSKCLESVSAHDDAVNSVVSSSEG--LIFTGS 214
VS + ++D L+ ++S+D ++W + +CL+++ D+ S V S I +
Sbjct: 155 VSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAAT 214
Query: 215 ADGTVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSSSRSIVYCGSSDGLVNFWE-RE 273
D +K+W + GK K K C V+ + IV GS D +V W +
Sbjct: 215 LDNDLKLWDYSK-GKCLKTYTGHKNEKY-CIFANFSVTGGKWIV-SGSEDNMVYIWNLQT 271
Query: 274 KQLSHGGVLKGHKLAVLCLAAAGKLVFSGSA----DKTICVWRRD 314
K++ L+GH V+ A SA DKTI +W+ D
Sbjct: 272 KEIVQK--LQGHTDVVISTACHPTENIIASAALENDKTIKLWKSD 314
Score = 45.8 bits (107), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 48/192 (25%), Positives = 73/192 (38%), Gaps = 56/192 (29%)
Query: 153 HSDAVSCMSLDQDCGLLYTASWDRTFKVWRISDSKCLESVSAHDDAVNSVV-SSSEGLIF 211
H+ AVS + + L ++S D+ K+W D K +++S H ++ V SS L+
Sbjct: 25 HTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLV 84
Query: 212 TGSADGTVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSSSRSIVYCGSSDGLVNFWE 271
+ S D T+K+W VSS + +
Sbjct: 85 SASDDKTLKIWD---------------------------VSSGKCL-------------- 103
Query: 272 REKQLSHGGVLKGHKLAVLC--LAAAGKLVFSGSADKTICVWRRDGAIHTCLSVLTGHTG 329
LKGH V C L+ SGS D+++ +W D CL L H+
Sbjct: 104 --------KTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW--DVKTGMCLKTLPAHSD 153
Query: 330 PVKCLAVEEDRD 341
PV AV +RD
Sbjct: 154 PVS--AVHFNRD 163
>pdb|3DM0|A Chain A, Maltose Binding Protein Fusion With Rack1 From A. Thaliana
Length = 694
Score = 61.2 bits (147), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 72/304 (23%), Positives = 125/304 (41%), Gaps = 57/304 (18%)
Query: 55 DLLYTGSDSKNIRVWKNLKEFCGFKAS-------SGLVKAIVIS--GEKIFTGHQDGKIR 105
D++ + S K+I +WK K+ + + S V+ +V+S G+ +G DG++R
Sbjct: 396 DIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDGQFALSGSWDGELR 455
Query: 106 VWKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRT-ALWIR------------ 152
+W ++ + T L F S+ + R RT LW
Sbjct: 456 LWDLAAGVSTRRFVGHTKDVLSVAF--SLDNRQIVSASRDRTIKLWNTLGECKYTISEGG 513
Query: 153 --HSDAVSCMSLDQDC--GLLYTASWDRTFKVWRISDSKCLESVSAHDDAVNSVVSSSEG 208
H D VSC+ + + +ASWD+T KVW +S+ K +++ H V++V S +G
Sbjct: 514 EGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDG 573
Query: 209 -LIFTGSADGTVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSSSRSIVYCGSSDGLV 267
L +G DG V +W + K L+ + AL S +R + C +++ +
Sbjct: 574 SLCASGGKDGVVLLWDLAEGKKLYS-------LEANSVIHALCFSPNRYWL-CAATEHGI 625
Query: 268 NFWERE----------------KQLSHGGVLKGHKLAVLCL----AAAGKLVFSGSADKT 307
W+ E ++ + G + + C +A G +FSG D
Sbjct: 626 KIWDLESKSIVEDLKVDLKAEAEKADNSGPAATKRKVIYCTSLNWSADGSTLFSGYTDGV 685
Query: 308 ICVW 311
I VW
Sbjct: 686 IRVW 689
>pdb|4AOW|A Chain A, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|B Chain B, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|C Chain C, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
Length = 340
Score = 58.2 bits (139), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 72/317 (22%), Positives = 130/317 (41%), Gaps = 46/317 (14%)
Query: 33 QNGLIGSLVREEGHIYSLAASK---DLLYTGSDSKNIRVWKNLKEFCGF-------KASS 82
Q L G+L G + +A + D++ + S K I +WK ++ + + S
Sbjct: 27 QMTLRGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHS 86
Query: 83 GLVKAIVIS--GEKIFTGHQDGKIRVWKISPKNQSVHKRAGTLPTLKDIFKS-------- 132
V +VIS G+ +G DG +R+W ++ + T L F S
Sbjct: 87 HFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSG 146
Query: 133 ----SIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCG--LLYTASWDRTFKVWRISDS 186
+IK N + V ++ T HS+ VSC+ + ++ + WD+ KVW +++
Sbjct: 147 SRDKTIKLWNTLGVCKY-TVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANC 205
Query: 187 KCLESVSAHDDAVNSVVSSSEG-LIFTGSADGTVKVWKREQHGKGTKHSLAQTLLKQECA 245
K + H +N+V S +G L +G DG +W + KH L
Sbjct: 206 KLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEG----KHLYT---LDGGDI 258
Query: 246 VTALVVSSSRSIVYCGSSDGLVNFWEREKQL----------SHGGVLKGHKLAVLCLAAA 295
+ AL S +R + C ++ + W+ E ++ S + + L +A
Sbjct: 259 INALCFSPNRYWL-CAATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSAD 317
Query: 296 GKLVFSGSADKTICVWR 312
G+ +F+G D + VW+
Sbjct: 318 GQTLFAGYTDNLVRVWQ 334
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/134 (26%), Positives = 63/134 (47%), Gaps = 14/134 (10%)
Query: 191 SVSAHDDAVNSVVSSSE--GLIFTGSADGTVKVWKREQHGKGTKHSLAQTLLKQEC-AVT 247
++ H+ V + ++ + +I + S D T+ +WK + T + + Q L+ V+
Sbjct: 33 TLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTR--DETNYGIPQRALRGHSHFVS 90
Query: 248 ALVVSSSRSIVYCGSSDGLVNFWEREKQLSHGGVLK---GHKLAVLCLAAA--GKLVFSG 302
+V+SS GS DG + W+ L+ G + GH VL +A + + + SG
Sbjct: 91 DVVISSDGQFALSGSWDGTLRLWD----LTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSG 146
Query: 303 SADKTICVWRRDGA 316
S DKTI +W G
Sbjct: 147 SRDKTIKLWNTLGV 160
>pdb|2ZKQ|AA Chain a, Structure Of A Mammalian Ribosomal 40s Subunit Within An
80s Complex Obtained By Docking Homology Models Of The
Rna And Proteins Into An 8.7 A Cryo-Em Map
Length = 317
Score = 58.2 bits (139), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 72/317 (22%), Positives = 130/317 (41%), Gaps = 46/317 (14%)
Query: 33 QNGLIGSLVREEGHIYSLAASK---DLLYTGSDSKNIRVWKNLKEFCGF-------KASS 82
Q L G+L G + +A + D++ + S K I +WK ++ + + S
Sbjct: 4 QMTLRGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHS 63
Query: 83 GLVKAIVIS--GEKIFTGHQDGKIRVWKISPKNQSVHKRAGTLPTLKDIFKS-------- 132
V +VIS G+ +G DG +R+W ++ + T L F S
Sbjct: 64 HFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSG 123
Query: 133 ----SIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCG--LLYTASWDRTFKVWRISDS 186
+IK N + V ++ T HS+ VSC+ + ++ + WD+ KVW +++
Sbjct: 124 SRDKTIKLWNTLGVCKY-TVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANC 182
Query: 187 KCLESVSAHDDAVNSVVSSSEG-LIFTGSADGTVKVWKREQHGKGTKHSLAQTLLKQECA 245
K + H +N+V S +G L +G DG +W + KH L
Sbjct: 183 KLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEG----KHLYT---LDGGDI 235
Query: 246 VTALVVSSSRSIVYCGSSDGLVNFWEREKQL----------SHGGVLKGHKLAVLCLAAA 295
+ AL S +R + C ++ + W+ E ++ S + + L +A
Sbjct: 236 INALCFSPNRYWL-CAATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSAD 294
Query: 296 GKLVFSGSADKTICVWR 312
G+ +F+G D + VW+
Sbjct: 295 GQTLFAGYTDNLVRVWQ 311
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/134 (26%), Positives = 63/134 (47%), Gaps = 14/134 (10%)
Query: 191 SVSAHDDAVNSVVSSSE--GLIFTGSADGTVKVWKREQHGKGTKHSLAQTLLKQEC-AVT 247
++ H+ V + ++ + +I + S D T+ +WK + T + + Q L+ V+
Sbjct: 10 TLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTR--DETNYGIPQRALRGHSHFVS 67
Query: 248 ALVVSSSRSIVYCGSSDGLVNFWEREKQLSHGGVLK---GHKLAVLCLAAA--GKLVFSG 302
+V+SS GS DG + W+ L+ G + GH VL +A + + + SG
Sbjct: 68 DVVISSDGQFALSGSWDGTLRLWD----LTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSG 123
Query: 303 SADKTICVWRRDGA 316
S DKTI +W G
Sbjct: 124 SRDKTIKLWNTLGV 137
>pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|D Chain D, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|G Chain G, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|H Chain H, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|K Chain K, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|L Chain L, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|O Chain O, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|P Chain P, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|S Chain S, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|T Chain T, Paf-Ah Holoenzyme: Lis1ALFA2
Length = 410
Score = 55.5 bits (132), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 55/203 (27%), Positives = 84/203 (41%), Gaps = 32/203 (15%)
Query: 153 HSDAVSCMSLDQDCGLLYTASWDRTFKVWRISDSKCLESVSAHDDAVNSVVSSSEG-LIF 211
H+D+V +S D LL + S D T K+W +C+ ++ HD V+SV G I
Sbjct: 149 HTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIV 208
Query: 212 TGSADGTVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSSSRSIVYCGSSDGLVNFWE 271
+ S D T+K+W+ Q G K T V + + +++ S+D V W
Sbjct: 209 SASRDKTIKMWEV-QTGYCVK-----TFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWV 262
Query: 272 REKQLSHGGVLKGHKLAVLCLAAA----------------------GKLVFSGSADKTIC 309
+ L+ H+ V C++ A G + SGS DKTI
Sbjct: 263 VATKECKAE-LREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIK 321
Query: 310 VWRRDGAIHTCLSVLTGHTGPVK 332
+W D + CL L GH V+
Sbjct: 322 MW--DVSTGMCLMTLVGHDNWVR 342
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 58/241 (24%), Positives = 94/241 (39%), Gaps = 49/241 (20%)
Query: 49 SLAASKDLLYTGSDSKNIRVWKN-----LKEFCGFKASSGLVKAIVISGEKIFTGHQDGK 103
S+ + D + + S K I++W+ +K F G + +V+ G I + D
Sbjct: 199 SIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQ-DGTLIASCSNDQT 257
Query: 104 IRVWKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALW-IRHSDAVSCMSL 162
+RVW ++ K E+R HR + I + S S+
Sbjct: 258 VRVWVVATKECKA------------------------ELREHRHVVECISWAPESSYSSI 293
Query: 163 DQDCG-----------LLYTASWDRTFKVWRISDSKCLESVSAHDDAVNSVVSSSEG-LI 210
+ G L + S D+T K+W +S CL ++ HD+ V V+ S G I
Sbjct: 294 SEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFI 353
Query: 211 FTGSADGTVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSSSRSIVYCGSSDGLVNFW 270
+ + D T++VW + +TL E VT+L + V GS D V W
Sbjct: 354 LSCADDKTLRVWDYKN------KRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVW 407
Query: 271 E 271
E
Sbjct: 408 E 408
Score = 41.2 bits (95), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 43/174 (24%), Positives = 76/174 (43%), Gaps = 18/174 (10%)
Query: 168 LLYTASWDRTFKVWRISDSKCLESVSAHDDAVNSVVSSSEG-LIFTGSADGTVKVWKREQ 226
++ +AS D T KVW ++ H D+V + G L+ + SAD T+K+W +
Sbjct: 122 VMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQ- 180
Query: 227 HGKGTKHSLAQTLLKQECAVTALVVSSSRSIVYCGSSDGLVNFWEREKQLSHGGVLK--- 283
+T+ + V+++ + + + S D + WE + G +K
Sbjct: 181 -----GFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWE----VQTGYCVKTFT 231
Query: 284 GHKLAVLCLAAA--GKLVFSGSADKTICVWRRDGAIHTCLSVLTGHTGPVKCLA 335
GH+ V + G L+ S S D+T+ VW A C + L H V+C++
Sbjct: 232 GHREWVRMVRPNQDGTLIASCSNDQTVRVWV--VATKECKAELREHRHVVECIS 283
Score = 37.7 bits (86), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 38/181 (20%), Positives = 70/181 (38%), Gaps = 28/181 (15%)
Query: 153 HSDAVSCMSLDQDCGLLYTASWDRTFKVWRISDSKCLESVSAHDDAVN----------SV 202
H + V + +QD L+ + S D+T +VW ++ +C + H V S
Sbjct: 233 HREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSS 292
Query: 203 VSSSEG-----------LIFTGSADGTVKVWKREQHGKGTKHSLAQTLLKQECAVTALVV 251
+S + G + +GS D T+K+W + TL+ + V ++
Sbjct: 293 ISEATGSETKKSGKPGPFLLSGSRDKTIKMWDV------STGMCLMTLVGHDNWVRGVLF 346
Query: 252 SSSRSIVYCGSSDGLVNFWE-REKQLSHGGVLKGHKLAVLCLAAAGKLVFSGSADKTICV 310
S + + D + W+ + K+ H + L V +GS D+T+ V
Sbjct: 347 HSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKV 406
Query: 311 W 311
W
Sbjct: 407 W 407
>pdb|3FM0|A Chain A, Crystal Structure Of Wd40 Protein Ciao1
Length = 345
Score = 48.9 bits (115), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 44/155 (28%), Positives = 77/155 (49%), Gaps = 10/155 (6%)
Query: 166 CG-LLYTASWDRTFKVWRIS--DSKCLESVSAHDDAVNSVVSSSEG-LIFTGSADGTVKV 221
CG L +AS+D T +W+ + D +C+ ++ H++ V SV + G L+ T S D +V V
Sbjct: 72 CGNYLASASFDATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWV 131
Query: 222 WKREQHGKGTKHSLAQTLLKQECAVTALVVSSSRSIVYCGSSDGLVNFW-EREKQLSHGG 280
W+ ++ + + L V +V S+ ++ S D V + E E
Sbjct: 132 WEVDEEDE---YECVSVLNSHTQDVKHVVWHPSQELLASASYDDTVKLYREEEDDWVCCA 188
Query: 281 VLKGHKLAVLCLA--AAGKLVFSGSADKTICVWRR 313
L+GH+ V LA +G+ + S S D+T+ +WR+
Sbjct: 189 TLEGHESTVWSLAFDPSGQRLASCSDDRTVRIWRQ 223
Score = 35.0 bits (79), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 29/55 (52%), Gaps = 2/55 (3%)
Query: 283 KGHKLAV--LCLAAAGKLVFSGSADKTICVWRRDGAIHTCLSVLTGHTGPVKCLA 335
+GH+ V + + G + S S D T C+W+++ C++ L GH VK +A
Sbjct: 58 EGHQRTVRKVAWSPCGNYLASASFDATTCIWKKNQDDFECVTTLEGHENEVKSVA 112
Score = 33.5 bits (75), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 32/128 (25%), Positives = 56/128 (43%), Gaps = 7/128 (5%)
Query: 209 LIFTGSADGTVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSSSRSIVYCGSSDGLVN 268
L+ + D +++W E K L++ + V + S + + S D
Sbjct: 30 LLASCGGDRRIRIWGTEGDSWICKSVLSEGHQR---TVRKVAWSPCGNYLASASFDATTC 86
Query: 269 FWER-EKQLSHGGVLKGHKLAV--LCLAAAGKLVFSGSADKTICVWRRDGAI-HTCLSVL 324
W++ + L+GH+ V + A +G L+ + S DK++ VW D + C+SVL
Sbjct: 87 IWKKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECVSVL 146
Query: 325 TGHTGPVK 332
HT VK
Sbjct: 147 NSHTQDVK 154
>pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|B Chain B, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|C Chain C, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
Length = 393
Score = 48.5 bits (114), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 50/192 (26%), Positives = 79/192 (41%), Gaps = 35/192 (18%)
Query: 169 LYTASWDRTFKVWRISDSKCLESVSAHDDAVNSVVSSSEG-LIFTGSADGTVKVWKRE-- 225
L + S DRT ++W + +C ++S D VS +G I GS D V+VW E
Sbjct: 180 LVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETG 239
Query: 226 --------QHGKGTKHSLAQTLLKQECAVTALVVSSSRSIVYCGSSDGLVNFW------- 270
++ GT H + +V ++V + V GS D V W
Sbjct: 240 FLVERLDSENESGTGH---------KDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANN 290
Query: 271 EREKQLSHGGVLK----GHKLAVLCLAAA--GKLVFSGSADKTICVWRRDGAIHTCLSVL 324
+ + + + G + GHK VL +A + + SGS D+ + W + L +L
Sbjct: 291 KSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSG--NPLLML 348
Query: 325 TGHTGPVKCLAV 336
GH V +AV
Sbjct: 349 QGHRNSVISVAV 360
Score = 37.4 bits (85), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 55/235 (23%), Positives = 96/235 (40%), Gaps = 46/235 (19%)
Query: 32 PQNGLIGSLVREEGHIYSLAASKD--LLYTGSDSKNIRVW--KNLKEFCGFKASSGLVKA 87
P+N S + +I S+ S D L TG++ + IR+W +N K + + +
Sbjct: 111 PENLNTSSSPSSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYS 170
Query: 88 I--VISGEKIFTGHQDGKIRVWKISPKNQSVHKRAGTLPTLKDIFKSSIKPSN--YI--- 140
+ SG+K+ +G D +R+W + S+ TL + ++ P + YI
Sbjct: 171 LDYFPSGDKLVSGSGDRTVRIWDLRTGQCSL-----TLSIEDGVTTVAVSPGDGKYIAAG 225
Query: 141 ------EVRRHRTALWIR-----------HSDAVSCMSLDQDCGLLYTASWDRTFKVWRI 183
V T + H D+V + +D + + S DR+ K+W +
Sbjct: 226 SLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNL 285
Query: 184 ------SDSK------CLESVSAHDDAVNSVVSS-SEGLIFTGSADGTVKVWKRE 225
SDSK C + H D V SV ++ ++ I +GS D V W ++
Sbjct: 286 QNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKK 340
Score = 37.4 bits (85), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 44/192 (22%), Positives = 78/192 (40%), Gaps = 37/192 (19%)
Query: 140 IEVRRHRTALWIRHSDAVSCMSLDQDCGLLYTASWDRTFKVWRISDSKCLESVSAHDDAV 199
I+V H++ + H+ V C+ D L T ++T +V+R+SD + +S D A
Sbjct: 53 IDVELHKS---LDHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLS-DDSAA 107
Query: 200 NSVVSSSEGLIFTGSADGTVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSSSRSIVY 259
N ++ T S + L + ++ S +
Sbjct: 108 N-----------------------KDPENLNTSSSPSSDLY-----IRSVCFSPDGKFLA 139
Query: 260 CGSSDGLVNFWEREKQLSHGGVLKGHKLAVLCLA--AAGKLVFSGSADKTICVWR-RDGA 316
G+ D L+ W+ E + +L+GH+ + L +G + SGS D+T+ +W R G
Sbjct: 140 TGAEDRLIRIWDIENR-KIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQ 198
Query: 317 IHTCLSVLTGHT 328
LS+ G T
Sbjct: 199 CSLTLSIEDGVT 210
>pdb|3RFG|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P63
pdb|3RFG|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P63
Length = 319
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 46/170 (27%), Positives = 69/170 (40%), Gaps = 19/170 (11%)
Query: 153 HSDAVSCMSLDQDCGLLYTASWDRTFKVWRISDSKCLESVSAHDDAVNSV-VSSSEGLIF 211
HS V +L D +ASWD+T ++W ++ + + H V SV + +I
Sbjct: 64 HSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMII 123
Query: 212 TGSADGTVKVWKREQHGKGTKHSLAQTLLKQECAVTALVV-------SSSRSIVYCGSSD 264
+GS D T+KVW K TLL V+ + V S +I+ G +D
Sbjct: 124 SGSRDKTIKVWT-------IKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAG-ND 175
Query: 265 GLVNFWEREKQLSHGGVLKGHKLAVLCLAAA--GKLVFSGSADKTICVWR 312
+V W Q GH + L A+ G L+ S D I +W
Sbjct: 176 KMVKAWNLN-QFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWN 224
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 72/317 (22%), Positives = 126/317 (39%), Gaps = 51/317 (16%)
Query: 36 LIGSLVREEGHIYSLAAS---KDLLYTGSDSKNIRVWK---NLKEFC----GFKASSGLV 85
L G+L G + SLA S +LL + S K + WK + ++F FK S +V
Sbjct: 9 LRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIV 68
Query: 86 K--AIVISGEKIFTGHQDGKIRVWKISPKNQSVHKRAGTLPTLKDIFKSSI--KPSNYIE 141
+ + G + D +R+W ++ ++ + G D+ I K S I
Sbjct: 69 QDCTLTADGAYALSASWDKTLRLWDVA-TGETYQRFVGHK---SDVMSVDIDKKASMIIS 124
Query: 142 VRRHRT-----------ALWIRHSDAVSCMSL------DQDCGLLYTASWDRTFKVWRIS 184
R +T A + H+D VS + + D D + +A D+ K W ++
Sbjct: 125 GSRDKTIKVWTIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLN 184
Query: 185 DSKCLESVSAHDDAVNSVVSSSEG-LIFTGSADGTVKVWKREQHGKGTKHSLAQTLLKQE 243
+ H+ +N++ +S +G LI + DG + +W A L +
Sbjct: 185 QFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKK-------AMYTLSAQ 237
Query: 244 CAVTALVVSSSRSIVYCGSSDGLVNFWEREKQL------SHGGVLKGHKLAVLCLA--AA 295
V +L S +R + ++ G+ F + L G K + + LA A
Sbjct: 238 DEVFSLAFSPNRYWLAAATATGIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSAD 297
Query: 296 GKLVFSGSADKTICVWR 312
G+ +F+G D I VW+
Sbjct: 298 GQTLFAGYTDNVIRVWQ 314
Score = 38.1 bits (87), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 38/145 (26%), Positives = 65/145 (44%), Gaps = 17/145 (11%)
Query: 191 SVSAHDDAVNSVVSSS--EGLIFTGSADGTVKVWK----REQHGKGTKHSLAQTLLKQEC 244
++ H+ V S+ +S+ L+ + S D T+ WK ++ G + + + Q+C
Sbjct: 12 TLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDC 71
Query: 245 AVTALVVSSSRSIVYCGSSDGLVNFWEREKQLSHGGVLKGHKLAVLCLAAAGK--LVFSG 302
+TA + S D + W+ ++ + GHK V+ + K ++ SG
Sbjct: 72 TLTA-----DGAYALSASWDKTLRLWDVATGETYQRFV-GHKSDVMSVDIDKKASMIISG 125
Query: 303 SADKTICVWRRDGAIHTCLSVLTGH 327
S DKTI VW G CL+ L GH
Sbjct: 126 SRDKTIKVWTIKG---QCLATLLGH 147
>pdb|3JYV|R Chain R, Structure Of The 40s Rrna And Proteins And PE TRNA FOR
EUKARYOTIC Ribosome Based On Cryo-Em Map Of Thermomyces
Lanuginosus Ribosome At 8.9a Resolution
Length = 313
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 46/170 (27%), Positives = 69/170 (40%), Gaps = 19/170 (11%)
Query: 153 HSDAVSCMSLDQDCGLLYTASWDRTFKVWRISDSKCLESVSAHDDAVNSV-VSSSEGLIF 211
HS V +L D +ASWD+T ++W ++ + + H V SV + +I
Sbjct: 58 HSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMII 117
Query: 212 TGSADGTVKVWKREQHGKGTKHSLAQTLLKQECAVTALVV-------SSSRSIVYCGSSD 264
+GS D T+KVW K TLL V+ + V S +I+ G +D
Sbjct: 118 SGSRDKTIKVWT-------IKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAG-ND 169
Query: 265 GLVNFWEREKQLSHGGVLKGHKLAVLCLAAA--GKLVFSGSADKTICVWR 312
+V W Q GH + L A+ G L+ S D I +W
Sbjct: 170 KMVKAWNLN-QFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWN 218
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 72/317 (22%), Positives = 126/317 (39%), Gaps = 51/317 (16%)
Query: 36 LIGSLVREEGHIYSLAAS---KDLLYTGSDSKNIRVWK---NLKEFC----GFKASSGLV 85
L G+L G + SLA S +LL + S K + WK + ++F FK S +V
Sbjct: 3 LRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIV 62
Query: 86 K--AIVISGEKIFTGHQDGKIRVWKISPKNQSVHKRAGTLPTLKDIFKSSI--KPSNYIE 141
+ + G + D +R+W ++ ++ + G D+ I K S I
Sbjct: 63 QDCTLTADGAYALSASWDKTLRLWDVA-TGETYQRFVGHK---SDVMSVDIDKKASMIIS 118
Query: 142 VRRHRT-----------ALWIRHSDAVSCMSL------DQDCGLLYTASWDRTFKVWRIS 184
R +T A + H+D VS + + D D + +A D+ K W ++
Sbjct: 119 GSRDKTIKVWTIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLN 178
Query: 185 DSKCLESVSAHDDAVNSVVSSSEG-LIFTGSADGTVKVWKREQHGKGTKHSLAQTLLKQE 243
+ H+ +N++ +S +G LI + DG + +W A L +
Sbjct: 179 QFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKK-------AMYTLSAQ 231
Query: 244 CAVTALVVSSSRSIVYCGSSDGLVNFWEREKQL------SHGGVLKGHKLAVLCLA--AA 295
V +L S +R + ++ G+ F + L G K + + LA A
Sbjct: 232 DEVFSLAFSPNRYWLAAATATGIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSAD 291
Query: 296 GKLVFSGSADKTICVWR 312
G+ +F+G D I VW+
Sbjct: 292 GQTLFAGYTDNVIRVWQ 308
Score = 38.1 bits (87), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 38/145 (26%), Positives = 65/145 (44%), Gaps = 17/145 (11%)
Query: 191 SVSAHDDAVNSVVSSS--EGLIFTGSADGTVKVWK----REQHGKGTKHSLAQTLLKQEC 244
++ H+ V S+ +S+ L+ + S D T+ WK ++ G + + + Q+C
Sbjct: 6 TLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDC 65
Query: 245 AVTALVVSSSRSIVYCGSSDGLVNFWEREKQLSHGGVLKGHKLAVLCLAAAGK--LVFSG 302
+TA + S D + W+ ++ + GHK V+ + K ++ SG
Sbjct: 66 TLTA-----DGAYALSASWDKTLRLWDVATGETYQRFV-GHKSDVMSVDIDKKASMIISG 119
Query: 303 SADKTICVWRRDGAIHTCLSVLTGH 327
S DKTI VW G CL+ L GH
Sbjct: 120 SRDKTIKVWTIKG---QCLATLLGH 141
>pdb|1TRJ|A Chain A, Homology Model Of Yeast Rack1 Protein Fitted Into 11.7a
Cryo-em Map Of Yeast 80s Ribosome
Length = 314
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 46/170 (27%), Positives = 69/170 (40%), Gaps = 19/170 (11%)
Query: 153 HSDAVSCMSLDQDCGLLYTASWDRTFKVWRISDSKCLESVSAHDDAVNSV-VSSSEGLIF 211
HS V +L D +ASWD+T ++W ++ + + H V SV + +I
Sbjct: 64 HSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMII 123
Query: 212 TGSADGTVKVWKREQHGKGTKHSLAQTLLKQECAVTALVV-------SSSRSIVYCGSSD 264
+GS D T+KVW K TLL V+ + V S +I+ G +D
Sbjct: 124 SGSRDKTIKVWT-------IKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAG-ND 175
Query: 265 GLVNFWEREKQLSHGGVLKGHKLAVLCLAAA--GKLVFSGSADKTICVWR 312
+V W Q GH + L A+ G L+ S D I +W
Sbjct: 176 KMVKAWNLN-QFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWN 224
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 72/317 (22%), Positives = 126/317 (39%), Gaps = 51/317 (16%)
Query: 36 LIGSLVREEGHIYSLAAS---KDLLYTGSDSKNIRVWK---NLKEFC----GFKASSGLV 85
L G+L G + SLA S +LL + S K + WK + ++F FK S +V
Sbjct: 9 LRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIV 68
Query: 86 K--AIVISGEKIFTGHQDGKIRVWKISPKNQSVHKRAGTLPTLKDIFKSSI--KPSNYIE 141
+ + G + D +R+W ++ ++ + G D+ I K S I
Sbjct: 69 QDCTLTADGAYALSASWDKTLRLWDVA-TGETYQRFVGHK---SDVMSVDIDKKASMIIS 124
Query: 142 VRRHRT-----------ALWIRHSDAVSCMSL------DQDCGLLYTASWDRTFKVWRIS 184
R +T A + H+D VS + + D D + +A D+ K W ++
Sbjct: 125 GSRDKTIKVWTIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLN 184
Query: 185 DSKCLESVSAHDDAVNSVVSSSEG-LIFTGSADGTVKVWKREQHGKGTKHSLAQTLLKQE 243
+ H+ +N++ +S +G LI + DG + +W A L +
Sbjct: 185 QFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKK-------AMYTLSAQ 237
Query: 244 CAVTALVVSSSRSIVYCGSSDGLVNFWEREKQL------SHGGVLKGHKLAVLCLA--AA 295
V +L S +R + ++ G+ F + L G K + + LA A
Sbjct: 238 DEVFSLAFSPNRYWLAAATATGIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSAD 297
Query: 296 GKLVFSGSADKTICVWR 312
G+ +F+G D I VW+
Sbjct: 298 GQTLFAGYTDNVIRVWQ 314
Score = 38.1 bits (87), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 38/145 (26%), Positives = 65/145 (44%), Gaps = 17/145 (11%)
Query: 191 SVSAHDDAVNSVVSSS--EGLIFTGSADGTVKVWK----REQHGKGTKHSLAQTLLKQEC 244
++ H+ V S+ +S+ L+ + S D T+ WK ++ G + + + Q+C
Sbjct: 12 TLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDC 71
Query: 245 AVTALVVSSSRSIVYCGSSDGLVNFWEREKQLSHGGVLKGHKLAVLCLAAAGK--LVFSG 302
+TA + S D + W+ ++ + GHK V+ + K ++ SG
Sbjct: 72 TLTA-----DGAYALSASWDKTLRLWDVATGETYQRFV-GHKSDVMSVDIDKKASMIISG 125
Query: 303 SADKTICVWRRDGAIHTCLSVLTGH 327
S DKTI VW G CL+ L GH
Sbjct: 126 SRDKTIKVWTIKG---QCLATLLGH 147
>pdb|3IZB|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into
A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae
Translating 80s Ribosome
pdb|3O2Z|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The First 80s In The Asymmetric Unit.
pdb|3O30|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The Second 80s In The Asymmetric Unit.
pdb|3U5C|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome A
pdb|3U5G|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome B
Length = 319
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 46/170 (27%), Positives = 69/170 (40%), Gaps = 19/170 (11%)
Query: 153 HSDAVSCMSLDQDCGLLYTASWDRTFKVWRISDSKCLESVSAHDDAVNSV-VSSSEGLIF 211
HS V +L D +ASWD+T ++W ++ + + H V SV + +I
Sbjct: 64 HSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMII 123
Query: 212 TGSADGTVKVWKREQHGKGTKHSLAQTLLKQECAVTALVV-------SSSRSIVYCGSSD 264
+GS D T+KVW K TLL V+ + V S +I+ G +D
Sbjct: 124 SGSRDKTIKVWT-------IKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAG-ND 175
Query: 265 GLVNFWEREKQLSHGGVLKGHKLAVLCLAAA--GKLVFSGSADKTICVWR 312
+V W Q GH + L A+ G L+ S D I +W
Sbjct: 176 KMVKAWNLN-QFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWN 224
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 72/317 (22%), Positives = 126/317 (39%), Gaps = 51/317 (16%)
Query: 36 LIGSLVREEGHIYSLAAS---KDLLYTGSDSKNIRVWK---NLKEFC----GFKASSGLV 85
L G+L G + SLA S +LL + S K + WK + ++F FK S +V
Sbjct: 9 LRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIV 68
Query: 86 K--AIVISGEKIFTGHQDGKIRVWKISPKNQSVHKRAGTLPTLKDIFKSSI--KPSNYIE 141
+ + G + D +R+W ++ ++ + G D+ I K S I
Sbjct: 69 QDCTLTADGAYALSASWDKTLRLWDVA-TGETYQRFVGHK---SDVMSVDIDKKASMIIS 124
Query: 142 VRRHRT-----------ALWIRHSDAVSCMSL------DQDCGLLYTASWDRTFKVWRIS 184
R +T A + H+D VS + + D D + +A D+ K W ++
Sbjct: 125 GSRDKTIKVWTIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLN 184
Query: 185 DSKCLESVSAHDDAVNSVVSSSEG-LIFTGSADGTVKVWKREQHGKGTKHSLAQTLLKQE 243
+ H+ +N++ +S +G LI + DG + +W A L +
Sbjct: 185 QFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKK-------AMYTLSAQ 237
Query: 244 CAVTALVVSSSRSIVYCGSSDGLVNFWEREKQL------SHGGVLKGHKLAVLCLA--AA 295
V +L S +R + ++ G+ F + L G K + + LA A
Sbjct: 238 DEVFSLAFSPNRYWLAAATATGIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSAD 297
Query: 296 GKLVFSGSADKTICVWR 312
G+ +F+G D I VW+
Sbjct: 298 GQTLFAGYTDNVIRVWQ 314
Score = 38.1 bits (87), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 38/145 (26%), Positives = 65/145 (44%), Gaps = 17/145 (11%)
Query: 191 SVSAHDDAVNSVVSSS--EGLIFTGSADGTVKVWK----REQHGKGTKHSLAQTLLKQEC 244
++ H+ V S+ +S+ L+ + S D T+ WK ++ G + + + Q+C
Sbjct: 12 TLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDC 71
Query: 245 AVTALVVSSSRSIVYCGSSDGLVNFWEREKQLSHGGVLKGHKLAVLCLAAAGK--LVFSG 302
+TA + S D + W+ ++ + GHK V+ + K ++ SG
Sbjct: 72 TLTA-----DGAYALSASWDKTLRLWDVATGETYQRFV-GHKSDVMSVDIDKKASMIISG 125
Query: 303 SADKTICVWRRDGAIHTCLSVLTGH 327
S DKTI VW G CL+ L GH
Sbjct: 126 SRDKTIKVWTIKG---QCLATLLGH 147
>pdb|3RFH|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|C Chain C, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|D Chain D, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
Length = 319
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 46/170 (27%), Positives = 69/170 (40%), Gaps = 19/170 (11%)
Query: 153 HSDAVSCMSLDQDCGLLYTASWDRTFKVWRISDSKCLESVSAHDDAVNSV-VSSSEGLIF 211
HS V +L D +ASWD+T ++W ++ + + H V SV + +I
Sbjct: 64 HSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMII 123
Query: 212 TGSADGTVKVWKREQHGKGTKHSLAQTLLKQECAVTALVV-------SSSRSIVYCGSSD 264
+GS D T+KVW K TLL V+ + V S +I+ G +D
Sbjct: 124 SGSRDKTIKVWT-------IKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAG-ND 175
Query: 265 GLVNFWEREKQLSHGGVLKGHKLAVLCLAAA--GKLVFSGSADKTICVWR 312
+V W Q GH + L A+ G L+ S D I +W
Sbjct: 176 KMVKAWNLN-QFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWN 224
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 70/318 (22%), Positives = 127/318 (39%), Gaps = 53/318 (16%)
Query: 36 LIGSLVREEGHIYSLAAS---KDLLYTGSDSKNIRVWK---NLKEFC----GFKASSGLV 85
L G+L G + SLA S +LL + S K + WK + ++F FK S +V
Sbjct: 9 LRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIV 68
Query: 86 K--AIVISGEKIFTGHQDGKIRVWKISPKNQSVHKRAGTLPTLKDIFKSSI--KPSNYIE 141
+ + G + D +R+W ++ ++ + G D+ I K S I
Sbjct: 69 QDCTLTADGAYALSASWDKTLRLWDVA-TGETYQRFVGHK---SDVMSVDIDKKASMIIS 124
Query: 142 VRRHRT-----------ALWIRHSDAVSCMSL------DQDCGLLYTASWDRTFKVWRIS 184
R +T A + H+D VS + + D D + +A D+ K W ++
Sbjct: 125 GSRDKTIKVWTIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLN 184
Query: 185 DSKCLESVSAHDDAVNSVVSSSEG-LIFTGSADGTVKVWKREQHGKGTKHSLAQTLLKQE 243
+ H+ +N++ +S +G LI + DG + +W A L +
Sbjct: 185 QFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKK-------AMYTLSAQ 237
Query: 244 CAVTALVVSSSRSIVYCGSSDGLVNFWEREKQL---------SHGGVLKGHKLAVLCLAA 294
V +L S +R + ++ G+ F + L + + H ++ L +A
Sbjct: 238 DEVFSLAFSPNRYWLAAATATGIKVFSLDPQYLVDDLRPEFAGYSAAAEPHAVS-LAWSA 296
Query: 295 AGKLVFSGSADKTICVWR 312
G+ +F+G D I VW+
Sbjct: 297 DGQTLFAGYTDNVIRVWQ 314
Score = 37.7 bits (86), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 38/145 (26%), Positives = 65/145 (44%), Gaps = 17/145 (11%)
Query: 191 SVSAHDDAVNSVVSSS--EGLIFTGSADGTVKVWK----REQHGKGTKHSLAQTLLKQEC 244
++ H+ V S+ +S+ L+ + S D T+ WK ++ G + + + Q+C
Sbjct: 12 TLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDC 71
Query: 245 AVTALVVSSSRSIVYCGSSDGLVNFWEREKQLSHGGVLKGHKLAVLCLAAAGK--LVFSG 302
+TA + S D + W+ ++ + GHK V+ + K ++ SG
Sbjct: 72 TLTA-----DGAYALSASWDKTLRLWDVATGETYQRFV-GHKSDVMSVDIDKKASMIISG 125
Query: 303 SADKTICVWRRDGAIHTCLSVLTGH 327
S DKTI VW G CL+ L GH
Sbjct: 126 SRDKTIKVWTIKG---QCLATLLGH 147
Score = 30.8 bits (68), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 14/43 (32%), Positives = 23/43 (53%), Gaps = 3/43 (6%)
Query: 74 EFCGFKASS---GLVKAIVISGEKIFTGHQDGKIRVWKISPKN 113
EF G+ A++ + A G+ +F G+ D IRVW++ N
Sbjct: 277 EFAGYSAAAEPHAVSLAWSADGQTLFAGYTDNVIRVWQVMTAN 319
>pdb|3ZEY|7 Chain 7, High-resolution Cryo-electron Microscopy Structure Of The
Trypanosoma Brucei Ribosome
Length = 318
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 64/292 (21%), Positives = 109/292 (37%), Gaps = 63/292 (21%)
Query: 42 REEGHI-----YSLAASKDLLYTGSDSKNIRVWKNLKEFCGFK----ASSGLVKAIVISG 92
R EGH +L+ + + + S ++R+W C +K L A
Sbjct: 62 RLEGHSAFVSDVALSNNGNFAVSASWDHSLRLWNLQNGQCQYKFLGHTKDVLSVAFSPDN 121
Query: 93 EKIFTGHQDGKIRVWKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIR 152
+I +G +D +RVW + K + +H + R A
Sbjct: 122 RQIVSGGRDNALRVWNV--KGECMHTLS-------------------------RGA---- 150
Query: 153 HSDAVSCMSLDQ--DCGLLYTASWDRTFKVWRISDSKCLESVSAHDDAVNSVVSSSEG-L 209
H+D VSC+ D ++ + WD KVW ++ + + + H + V SV S +G L
Sbjct: 151 HTDWVSCVRFSPSLDAPVIVSGGWDNLVKVWDLATGRLVTDLKGHTNYVTSVTVSPDGSL 210
Query: 210 IFTGSADGTVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSSSRSIVYCGSSDGLVNF 269
+ DG ++W + G+ A + Q C S +R + + G+ F
Sbjct: 211 CASSDKDGVARLWDLTK-GEALSEMAAGAPINQIC------FSPNRYWMCAATEKGIRIF 263
Query: 270 WEREKQL------SHGGVLKGHKLAVLCLAAA----GKLVFSGSADKTICVW 311
K + H G K+ C++ A G ++SG D I VW
Sbjct: 264 DLENKDIIVELAPEHQG---SKKIVPECVSIAWSADGSTLYSGYTDNVIRVW 312
>pdb|2HES|X Chain X, Cytosolic Iron-sulphur Assembly Protein- 1
Length = 330
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 52/182 (28%), Positives = 78/182 (42%), Gaps = 11/182 (6%)
Query: 161 SLDQDCGLLYTASWDRTFKVWRIS-DSKCLESV---SAHDDAVNSVV-SSSEGLIFTGSA 215
S D G+L T S DR K+ + D L V +AH A+ SV L+ GS
Sbjct: 19 SFDFSQGILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRPHTSLLAAGSF 78
Query: 216 DGTVKVWKREQHGKGT-KHSLAQTLLKQECAVTALVVSSSRSIVYCGSSDGLVNFWEREK 274
D TV +W +E+ T + L + E V + S+ + S D V WE ++
Sbjct: 79 DSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWETDE 138
Query: 275 ---QLSHGGVLKGHKLAV--LCLAAAGKLVFSGSADKTICVWRRDGAIHTCLSVLTGHTG 329
+ VL+ H V + + L+ S S D T+ +W+ C++VL GH G
Sbjct: 139 SGEEYECISVLQEHSQDVKHVIWHPSEALLASSSYDDTVRIWKDYDDDWECVAVLNGHEG 198
Query: 330 PV 331
V
Sbjct: 199 TV 200
Score = 38.1 bits (87), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 43/176 (24%), Positives = 74/176 (42%), Gaps = 15/176 (8%)
Query: 153 HSDAVSCMSLDQDCGLLYTASWDRTFKVW-------RISDSKCLESVSAHDDAVNSVVSS 205
H A+ ++ LL S+D T +W R + L + H++ V V S
Sbjct: 57 HKKAIRSVAWRPHTSLLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWS 116
Query: 206 SEGLIF-TGSADGTVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSSSRSIVYCGSSD 264
++G T S D +V +W+ ++ G+ ++ L + V ++ S +++ S D
Sbjct: 117 NDGYYLATCSRDKSVWIWETDESGE--EYECISVLQEHSQDVKHVIWHPSEALLASSSYD 174
Query: 265 GLVNFW-EREKQLSHGGVLKGHKLAVLCLA-AAGKLVF---SGSADKTICVWRRDG 315
V W + + VL GH+ V + VF SGS D T+ VW+ G
Sbjct: 175 DTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMG 230
Score = 31.6 bits (70), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 40/83 (48%), Gaps = 6/83 (7%)
Query: 195 HDDAVNSVVSSSEGLIFTGSADGTVKVWKREQHGKG---TKHSLAQTLLKQECAVTALVV 251
H V +V GLI + ADG + V++ E G+ K +L + E V +
Sbjct: 249 HKRQVYNVAWGFNGLIASVGADGVLAVYE-EVDGEWKVFAKRALCHGVY--EINVVKWLE 305
Query: 252 SSSRSIVYCGSSDGLVNFWEREK 274
+ ++I+ G DG+VNFW EK
Sbjct: 306 LNGKTILATGGDDGIVNFWSLEK 328
>pdb|1GOT|B Chain B, Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimera And
The Gt-Beta-Gamma Subunits
pdb|2TRC|B Chain B, PhosducinTRANSDUCIN BETA-Gamma Complex
pdb|1B9X|A Chain A, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin
pdb|1B9Y|A Chain A, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin Beta-Gamma
Length = 340
Score = 45.1 bits (105), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 62/272 (22%), Positives = 104/272 (38%), Gaps = 45/272 (16%)
Query: 95 IFTGHQDGKIRVWKISPKNQSVHK--------------------RAGTLPTLKDIFKSSI 134
+ + QDGK+ +W N+ VH G L + I+
Sbjct: 70 LLSASQDGKLIIWDSYTTNK-VHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKT 128
Query: 135 KPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCGLLYTASWDRTFKVWRISDSKCLESVSA 194
+ N + V R H+ +SC D + T+S D T +W I + + +
Sbjct: 129 REGN-VRVSRELAG----HTGYLSCCRFLDD-NQIVTSSGDTTCALWDIETGQQTTTFTG 182
Query: 195 HDDAVNSVVSSSEGLIF-TGSADGTVKVWK-REQHGKGTKHSLAQTLLKQECAVTALVVS 252
H V S+ + + +F +G+ D + K+W RE + QT E + A+
Sbjct: 183 HTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCR-------QTFTGHESDINAICFF 235
Query: 253 SSRSIVYCGSSDGLVNFWE-REKQ----LSHGGVLKGHKLAVLCLAAAGKLVFSGSADKT 307
+ + GS D ++ R Q SH ++ G + + + +G+L+ +G D
Sbjct: 236 PNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICG--ITSVSFSKSGRLLLAGYDDFN 293
Query: 308 ICVWRRDGAIHTCLSVLTGHTGPVKCLAVEED 339
VW D VL GH V CL V +D
Sbjct: 294 CNVW--DALKADRAGVLAGHDNRVSCLGVTDD 323
Score = 32.7 bits (73), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 32/153 (20%), Positives = 55/153 (35%), Gaps = 24/153 (15%)
Query: 49 SLAASKDLLYTGSDSKNIRVWKNLKEFC--GFKASSGLVKAIVI--SGEKIFTGHQDGKI 104
SLA L +G+ + ++W + C F + AI +G TG D
Sbjct: 191 SLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATC 250
Query: 105 RVWKISPKNQ----------------SVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTA 148
R++ + + S K L D F ++ + ++ R
Sbjct: 251 RLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNV----WDALKADRAG 306
Query: 149 LWIRHSDAVSCMSLDQDCGLLYTASWDRTFKVW 181
+ H + VSC+ + D + T SWD K+W
Sbjct: 307 VLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIW 339
>pdb|1A0R|B Chain B, Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-Gamma
Length = 340
Score = 45.1 bits (105), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 62/272 (22%), Positives = 104/272 (38%), Gaps = 45/272 (16%)
Query: 95 IFTGHQDGKIRVWKISPKNQSVHK--------------------RAGTLPTLKDIFKSSI 134
+ + QDGK+ +W N+ VH G L + I+
Sbjct: 70 LLSASQDGKLIIWDSYTTNK-VHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKT 128
Query: 135 KPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCGLLYTASWDRTFKVWRISDSKCLESVSA 194
+ N + V R H+ +SC D + T+S D T +W I + + +
Sbjct: 129 REGN-VRVSRELAG----HTGYLSCCRFLDD-NQIVTSSGDTTCALWDIETGQQTTTFTG 182
Query: 195 HDDAVNSVVSSSEGLIF-TGSADGTVKVWK-REQHGKGTKHSLAQTLLKQECAVTALVVS 252
H V S+ + + +F +G+ D + K+W RE + QT E + A+
Sbjct: 183 HTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCR-------QTFTGHESDINAICFF 235
Query: 253 SSRSIVYCGSSDGLVNFWE-REKQ----LSHGGVLKGHKLAVLCLAAAGKLVFSGSADKT 307
+ + GS D ++ R Q SH ++ G + + + +G+L+ +G D
Sbjct: 236 PNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICG--ITSVSFSKSGRLLLAGYDDFN 293
Query: 308 ICVWRRDGAIHTCLSVLTGHTGPVKCLAVEED 339
VW D VL GH V CL V +D
Sbjct: 294 CNVW--DALKADRAGVLAGHDNRVSCLGVTDD 323
Score = 32.7 bits (73), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 32/153 (20%), Positives = 55/153 (35%), Gaps = 24/153 (15%)
Query: 49 SLAASKDLLYTGSDSKNIRVWKNLKEFC--GFKASSGLVKAIVI--SGEKIFTGHQDGKI 104
SLA L +G+ + ++W + C F + AI +G TG D
Sbjct: 191 SLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATC 250
Query: 105 RVWKISPKNQ----------------SVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTA 148
R++ + + S K L D F ++ + ++ R
Sbjct: 251 RLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNV----WDALKADRAG 306
Query: 149 LWIRHSDAVSCMSLDQDCGLLYTASWDRTFKVW 181
+ H + VSC+ + D + T SWD K+W
Sbjct: 307 VLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIW 339
>pdb|2XZM|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 1
pdb|2XZN|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 2
Length = 343
Score = 45.1 bits (105), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 39/175 (22%), Positives = 69/175 (39%), Gaps = 25/175 (14%)
Query: 153 HSDAVSCMSLDQDCGLLYTASWDRTFKVWRISDSKCLESVSAHDDAVNSVVSSSEG-LIF 211
H+ VS ++L Q+ ++SWD+T ++W + + H V SV S + I
Sbjct: 75 HNHFVSDLALSQENCFAISSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQIL 134
Query: 212 TGSADGTVKVW-----------KREQHGKGTKHSLAQTLLKQECAVTALVVSSSRSIVYC 260
+ A+ +K+W ++E H ++K V Y
Sbjct: 135 SAGAEREIKLWNILGECKFSSAEKENHSDWVSCVRYSPIMKSANKVQPFA-------PYF 187
Query: 261 GSS--DGLVNFWEREKQLSHGGVLKGHKLAV--LCLAAAGKLVFSGSADKTICVW 311
S DG + W Q+ + K H+ V L ++ GK + +G DK + +W
Sbjct: 188 ASVGWDGRLKVWNTNFQIRY--TFKAHESNVNHLSISPNGKYIATGGKDKKLLIW 240
Score = 33.1 bits (74), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 36/156 (23%), Positives = 63/156 (40%), Gaps = 17/156 (10%)
Query: 192 VSAHDDAVNSVVS-------SSEGLIFTGSADGTVKVWK---REQHGK-GTKHSLAQTLL 240
+ H D V S+V+ ++ +GS D TV +WK EQ+G G H + L
Sbjct: 17 LEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPH---KALT 73
Query: 241 KQECAVTALVVSSSRSIVYCGSSDGLVNFWEREKQLSHGGVLKGHKLAVLCLAAA--GKL 298
V+ L +S S D + W+ ++ + GH+ V +A + +
Sbjct: 74 GHNHFVSDLALSQENCFAISSSWDKTLRLWDLRTGTTYKRFV-GHQSEVYSVAFSPDNRQ 132
Query: 299 VFSGSADKTICVWRRDGAIHTCLSVLTGHTGPVKCL 334
+ S A++ I +W G + H+ V C+
Sbjct: 133 ILSAGAEREIKLWNILGECKFSSAEKENHSDWVSCV 168
Score = 32.3 bits (72), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 36/78 (46%), Gaps = 13/78 (16%)
Query: 275 QLSHGGVLKGHKLAVLCLAAA--------GKLVFSGSADKTICVWR-----RDGAIHTCL 321
Q+ G+L+GH V + A ++ SGS DKT+ +W+ ++G
Sbjct: 10 QVVKRGILEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPH 69
Query: 322 SVLTGHTGPVKCLAVEED 339
LTGH V LA+ ++
Sbjct: 70 KALTGHNHFVSDLALSQE 87
Score = 31.6 bits (70), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 48/203 (23%), Positives = 80/203 (39%), Gaps = 39/203 (19%)
Query: 56 LLYTGSDSKNIRVWKNLKE----FCGF--KASSG---LVKAIVISGEKIF--TGHQDGKI 104
+L +GS K + +WK +E + G KA +G V + +S E F + D +
Sbjct: 41 VLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENCFAISSSWDKTL 100
Query: 105 RVWKISPKNQSVHKR----------AGTLPTLKDIFKS----SIKPSNYIEVRRHRTALW 150
R+W + + + +KR P + I + IK N + + +A
Sbjct: 101 RLWDL--RTGTTYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNILGECKFSSAEK 158
Query: 151 IRHSDAVSCM----------SLDQDCGLLYTASWDRTFKVWRISDSKCLESVSAHDDAVN 200
HSD VSC+ + + WD KVW ++ + + AH+ VN
Sbjct: 159 ENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWN-TNFQIRYTFKAHESNVN 217
Query: 201 SVVSSSEG-LIFTGSADGTVKVW 222
+ S G I TG D + +W
Sbjct: 218 HLSISPNGKYIATGGKDKKLLIW 240
>pdb|3IZ6|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into
A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s
Ribosome
Length = 380
Score = 44.7 bits (104), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 45/173 (26%), Positives = 84/173 (48%), Gaps = 11/173 (6%)
Query: 153 HSDAVSCMSLDQ-DCGLLYTASWDRTFKVW--RISDSKCLESVSAHDDAVNSVVSSSEGL 209
H+ V +S++ + + + S D T ++W RI+ S+ + + H+ +NSV +G
Sbjct: 204 HTADVLSLSINSLNANMFISGSCDTTVRLWDLRIT-SRAVRTYHGHEGDINSVKFFPDGQ 262
Query: 210 IF-TGSADGTVKVWK-REQHGKGTKHSLAQTLLKQECAVTALVVSSSRSIVYCGSSDGLV 267
F TGS DGT +++ R H + + VT++ S S +++ G S+G
Sbjct: 263 RFGTGSDDGTCRLFDMRTGHQLQVYNREPDRNDNELPIVTSVAFSISGRLLFAGYSNGDC 322
Query: 268 NFWER---EKQLSHGGVLKGH--KLAVLCLAAAGKLVFSGSADKTICVWRRDG 315
W+ E L+ G + H +++ L L++ G + +GS DK + +W G
Sbjct: 323 YVWDTLLAEMVLNLGTLQNSHEGRISCLGLSSDGSALCTGSWDKNLKIWAFSG 375
Score = 37.7 bits (86), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 37/165 (22%), Positives = 64/165 (38%), Gaps = 30/165 (18%)
Query: 47 IYSLAASKDLLYTGSDSKNIRVW------KNLKEFCGFKASSGLVKAIVISGEKIFTGHQ 100
I SL A ++ +GS +R+W + ++ + G + VK G++ TG
Sbjct: 213 INSLNA--NMFISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVK-FFPDGQRFGTGSD 269
Query: 101 DGKIRVW------KISPKNQSVHKRAGTLPTLKDI---------FKSSIKPSNYI----- 140
DG R++ ++ N+ + LP + + F Y+
Sbjct: 270 DGTCRLFDMRTGHQLQVYNREPDRNDNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLL 329
Query: 141 -EVRRHRTALWIRHSDAVSCMSLDQDCGLLYTASWDRTFKVWRIS 184
E+ + L H +SC+ L D L T SWD+ K+W S
Sbjct: 330 AEMVLNLGTLQNSHEGRISCLGLSSDGSALCTGSWDKNLKIWAFS 374
>pdb|3FRX|A Chain A, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|B Chain B, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|C Chain C, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|D Chain D, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1
Length = 319
Score = 44.7 bits (104), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 46/170 (27%), Positives = 67/170 (39%), Gaps = 19/170 (11%)
Query: 153 HSDAVSCMSLDQDCGLLYTASWDRTFKVWRISDSKCLESVSAHDDAVNSV-VSSSEGLIF 211
HS V +L D +ASWD+T ++W ++ + + H V SV + I
Sbjct: 64 HSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVXSVDIDKKASXII 123
Query: 212 TGSADGTVKVWKREQHGKGTKHSLAQTLLKQECAVTALVV-------SSSRSIVYCGSSD 264
+GS D T+KVW K TLL V+ + V S +I+ G +D
Sbjct: 124 SGSRDKTIKVWT-------IKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAG-ND 175
Query: 265 GLVNFWEREKQLSHGGVLKGHKLAVLCLAAA--GKLVFSGSADKTICVWR 312
V W Q GH + L A+ G L+ S D I +W
Sbjct: 176 KXVKAWNLN-QFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIXLWN 224
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 73/317 (23%), Positives = 127/317 (40%), Gaps = 51/317 (16%)
Query: 36 LIGSLVREEGHIYSLAAS---KDLLYTGSDSKNIRVWK---NLKEFC----GFKASSGLV 85
L G+L G + SLA S +LL + S K + WK + ++F FK S +V
Sbjct: 9 LRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIV 68
Query: 86 K--AIVISGEKIFTGHQDGKIRVWKISPKNQSVHKRAGTLPTLK--DIFKSSIKPSNYIE 141
+ + G + D +R+W ++ ++ + G + DI K K S I
Sbjct: 69 QDCTLTADGAYALSASWDKTLRLWDVA-TGETYQRFVGHKSDVXSVDIDK---KASXIIS 124
Query: 142 VRRHRT-----------ALWIRHSDAVSCMSL------DQDCGLLYTASWDRTFKVWRIS 184
R +T A + H+D VS + + D D + +A D+ K W ++
Sbjct: 125 GSRDKTIKVWTIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKXVKAWNLN 184
Query: 185 DSKCLESVSAHDDAVNSVVSSSEG-LIFTGSADGTVKVWKREQHGKGTKHSLAQTLLKQE 243
+ H+ +N++ +S +G LI + DG + +W A L +
Sbjct: 185 QFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIXLWNLAAKK-------AXYTLSAQ 237
Query: 244 CAVTALVVSSSRSIVYCGSSDGLVNFWEREKQL------SHGGVLKGHKLAVLCLA--AA 295
V +L S +R + ++ G+ F + L G K + + LA A
Sbjct: 238 DEVFSLAFSPNRYWLAAATATGIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSAD 297
Query: 296 GKLVFSGSADKTICVWR 312
G+ +F+G D I VW+
Sbjct: 298 GQTLFAGYTDNVIRVWQ 314
Score = 35.0 bits (79), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 38/145 (26%), Positives = 63/145 (43%), Gaps = 17/145 (11%)
Query: 191 SVSAHDDAVNSVVSSS--EGLIFTGSADGTVKVWK----REQHGKGTKHSLAQTLLKQEC 244
++ H+ V S+ +S+ L+ + S D T+ WK ++ G + + + Q+C
Sbjct: 12 TLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDC 71
Query: 245 AVTALVVSSSRSIVYCGSSDGLVNFWEREKQLSHGGVLKGHKLAVLCLAAAGK--LVFSG 302
+TA + S D + W+ ++ + GHK V + K + SG
Sbjct: 72 TLTA-----DGAYALSASWDKTLRLWDVATGETYQRFV-GHKSDVXSVDIDKKASXIISG 125
Query: 303 SADKTICVWRRDGAIHTCLSVLTGH 327
S DKTI VW G CL+ L GH
Sbjct: 126 SRDKTIKVWTIKG---QCLATLLGH 147
>pdb|1GG2|B Chain B, G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Beta_1
Gamma_2 With Gdp Bound
pdb|1GP2|B Chain B, G Protein Heterotrimer Gi_alpha_1 Beta_1 Gamma_2 With Gdp
Bound
pdb|1TBG|A Chain A, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|B Chain B, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|C Chain C, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|D Chain D, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1OMW|B Chain B, Crystal Structure Of The Complex Between G Protein-Coupled
Receptor Kinase 2 And Heterotrimeric G Protein Beta 1
And Gamma 2 Subunits
pdb|1XHM|A Chain A, The Crystal Structure Of A Biologically Active Peptide
(Sigk) Bound To A G Protein Beta:gamma Heterodimer
pdb|3CIK|B Chain B, Human Grk2 In Complex With Gbetagamma Subunits
pdb|3KRW|B Chain B, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Soak)
pdb|3KRX|B Chain B, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Co-Crystal)
pdb|3AH8|B Chain B, Structure Of Heterotrimeric G Protein Galpha-Q Beta Gamma
In Complex With An Inhibitor Ym-254890
pdb|3PSC|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits
pdb|3PVU|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd101)
pdb|3PVW|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd103a)
pdb|3UZS|B Chain B, Structure Of The C13.28 Rna Aptamer Bound To The G
Protein-Coupled Receptor Kinase 2-Heterotrimeric G
Protein Beta 1 And Gamma 2 Subunit Complex
pdb|3V5W|B Chain B, Human G Protein-Coupled Receptor Kinase 2 In Complex With
Soluble Gbetagamma Subunits And Paroxetine
Length = 340
Score = 44.7 bits (104), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 62/272 (22%), Positives = 104/272 (38%), Gaps = 45/272 (16%)
Query: 95 IFTGHQDGKIRVWKISPKNQSVHK--------------------RAGTLPTLKDIFKSSI 134
+ + QDGK+ +W N+ VH G L + I+
Sbjct: 70 LVSASQDGKLIIWDSYTTNK-VHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKT 128
Query: 135 KPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCGLLYTASWDRTFKVWRISDSKCLESVSA 194
+ N + V R H+ +SC D + T+S D T +W I + + +
Sbjct: 129 REGN-VRVSRELAG----HTGYLSCCRFLDD-NQIVTSSGDTTCALWDIETGQQTTTFTG 182
Query: 195 HDDAVNSVVSSSEGLIF-TGSADGTVKVWK-REQHGKGTKHSLAQTLLKQECAVTALVVS 252
H V S+ + + +F +G+ D + K+W RE + QT E + A+
Sbjct: 183 HTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCR-------QTFTGHESDINAICFF 235
Query: 253 SSRSIVYCGSSDGLVNFWE-REKQ----LSHGGVLKGHKLAVLCLAAAGKLVFSGSADKT 307
+ + GS D ++ R Q SH ++ G + + + +G+L+ +G D
Sbjct: 236 PNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICG--ITSVSFSKSGRLLLAGYDDFN 293
Query: 308 ICVWRRDGAIHTCLSVLTGHTGPVKCLAVEED 339
VW D VL GH V CL V +D
Sbjct: 294 CNVW--DALKADRAGVLAGHDNRVSCLGVTDD 323
Score = 32.7 bits (73), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 32/153 (20%), Positives = 55/153 (35%), Gaps = 24/153 (15%)
Query: 49 SLAASKDLLYTGSDSKNIRVWKNLKEFC--GFKASSGLVKAIVI--SGEKIFTGHQDGKI 104
SLA L +G+ + ++W + C F + AI +G TG D
Sbjct: 191 SLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATC 250
Query: 105 RVWKISPKNQ----------------SVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTA 148
R++ + + S K L D F ++ + ++ R
Sbjct: 251 RLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNV----WDALKADRAG 306
Query: 149 LWIRHSDAVSCMSLDQDCGLLYTASWDRTFKVW 181
+ H + VSC+ + D + T SWD K+W
Sbjct: 307 VLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIW 339
>pdb|2BCJ|B Chain B, Crystal Structure Of G Protein-coupled Receptor Kinase 2
In Complex With Galpha-q And Gbetagamma Subunits
Length = 340
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 62/272 (22%), Positives = 104/272 (38%), Gaps = 45/272 (16%)
Query: 95 IFTGHQDGKIRVWKISPKNQSVHK--------------------RAGTLPTLKDIFKSSI 134
+ + QDGK+ +W N+ VH G L + I+
Sbjct: 70 LVSASQDGKLIIWDSYTTNK-VHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKT 128
Query: 135 KPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCGLLYTASWDRTFKVWRISDSKCLESVSA 194
+ N + V R H+ +SC D + T+S D T +W I + + +
Sbjct: 129 REGN-VRVSRELAG----HTGYLSCCRFLDD-NQIVTSSGDTTCALWDIETGQQTTTFTG 182
Query: 195 HDDAVNSVVSSSEGLIF-TGSADGTVKVWK-REQHGKGTKHSLAQTLLKQECAVTALVVS 252
H V S+ + + +F +G+ D + K+W RE + QT E + A+
Sbjct: 183 HTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCR-------QTFTGHESDINAICFF 235
Query: 253 SSRSIVYCGSSDGLVNFWE-REKQ----LSHGGVLKGHKLAVLCLAAAGKLVFSGSADKT 307
+ + GS D ++ R Q SH ++ G + + + +G+L+ +G D
Sbjct: 236 PNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICG--ITSVSFSKSGRLLLAGYDDFN 293
Query: 308 ICVWRRDGAIHTCLSVLTGHTGPVKCLAVEED 339
VW D VL GH V CL V +D
Sbjct: 294 CNVW--DALKADRAGVLAGHDNRVSCLGVTDD 323
Score = 32.7 bits (73), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 32/153 (20%), Positives = 55/153 (35%), Gaps = 24/153 (15%)
Query: 49 SLAASKDLLYTGSDSKNIRVWKNLKEFC--GFKASSGLVKAIVI--SGEKIFTGHQDGKI 104
SLA L +G+ + ++W + C F + AI +G TG D
Sbjct: 191 SLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATC 250
Query: 105 RVWKISPKNQ----------------SVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTA 148
R++ + + S K L D F ++ + ++ R
Sbjct: 251 RLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNV----WDALKADRAG 306
Query: 149 LWIRHSDAVSCMSLDQDCGLLYTASWDRTFKVW 181
+ H + VSC+ + D + T SWD K+W
Sbjct: 307 VLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIW 339
>pdb|3ODT|A Chain A, Crystal Structure Of Wd40 Beta Propeller Domain Of Doa1
pdb|3ODT|B Chain B, Crystal Structure Of Wd40 Beta Propeller Domain Of Doa1
Length = 313
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 46/199 (23%), Positives = 85/199 (42%), Gaps = 12/199 (6%)
Query: 39 SLVREEGHIYSLAASKDLLYTGSDSKNIRVWKNLKEFCGFKASSGLV---KAIVISGEKI 95
+L+ +G++ SL+ ++ +GS K +VWK +A + V K + S K
Sbjct: 99 TLIGHQGNVCSLSFQDGVVISGSWDKTAKVWKEGSLVYNLQAHNASVWDAKVVSFSENKF 158
Query: 96 FTGHQDGKIRVW---KISPKNQSVHKRAGT-LPTLKDIFKSSIKPSNYIEVRRHRTALWI 151
T D I++W K+ +H L + D S I++ T +
Sbjct: 159 LTASADKTIKLWQNDKVIKTFSGIHNDVVRHLAVVDDGHFISCSNDGLIKLVDXHTGDVL 218
Query: 152 R----HSDAVSCMSLDQDCGLLYTASWDRTFKVWRISDSKCLESVSAHDDAVNSVVSSSE 207
R H V C+ L + G + + DRT ++W + + ++ ++ SV S
Sbjct: 219 RTYEGHESFVYCIKLLPN-GDIVSCGEDRTVRIWSKENGSLKQVITLPAISIWSVDCXSN 277
Query: 208 GLIFTGSADGTVKVWKREQ 226
G I GS+D V+++ +E+
Sbjct: 278 GDIIVGSSDNLVRIFSQEK 296
Score = 35.8 bits (81), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 35/134 (26%), Positives = 55/134 (41%), Gaps = 19/134 (14%)
Query: 214 SADGTVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSSSRSIVYCGSSDGLVN----F 269
S DGTV++W ++ GT Q L C S + ++ G D +N F
Sbjct: 36 SRDGTVRLWSKDDQWLGTVVYTGQGFLNSVC------YDSEKELLLFGGKDTXINGVPLF 89
Query: 270 WEREKQLSHGGVLKGHKLAVLCLAAAGKLVFSGSADKTICVWRRDGAIHTCLSVLTGHTG 329
+ + L GH+ V L+ +V SGS DKT VW+ ++ L H
Sbjct: 90 ATSGEDPLY--TLIGHQGNVCSLSFQDGVVISGSWDKTAKVWKEGSLVYN----LQAHNA 143
Query: 330 PV---KCLAVEEDR 340
V K ++ E++
Sbjct: 144 SVWDAKVVSFSENK 157
Score = 30.4 bits (67), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 47/174 (27%), Positives = 71/174 (40%), Gaps = 17/174 (9%)
Query: 171 TASWDRTFKVWRISDSKCLESVSAHDDAVNSVVSSSEG--LIFTGSADGTVKVWKREQHG 228
+ S D T ++W D V +NSV SE L+F G V G
Sbjct: 34 SVSRDGTVRLWSKDDQWLGTVVYTGQGFLNSVCYDSEKELLLFGGKDTXINGVPLFATSG 93
Query: 229 KGTKHSLAQTLLKQECAVTALVVSSSRSIVYCGSSDGLVNFWEREKQLSHGGVLKGHKLA 288
+ + TL+ + V +L S +V GS D W +E L + L+ H +
Sbjct: 94 EDPLY----TLIGHQGNVCSL--SFQDGVVISGSWDKTAKVW-KEGSLVYN--LQAHNAS 144
Query: 289 VL---CLAAAGKLVFSGSADKTICVWRRDGAIHTCLSVLTGHTGPVKCLAVEED 339
V ++ + + SADKTI +W+ D I T + H V+ LAV +D
Sbjct: 145 VWDAKVVSFSENKFLTASADKTIKLWQNDKVIKTFSGI---HNDVVRHLAVVDD 195
>pdb|3SN6|B Chain B, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs
Protein Complex
Length = 351
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 62/272 (22%), Positives = 104/272 (38%), Gaps = 45/272 (16%)
Query: 95 IFTGHQDGKIRVWKISPKNQSVHK--------------------RAGTLPTLKDIFKSSI 134
+ + QDGK+ +W N+ VH G L + I+
Sbjct: 81 LVSASQDGKLIIWDSYTTNK-VHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKT 139
Query: 135 KPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCGLLYTASWDRTFKVWRISDSKCLESVSA 194
+ N + V R H+ +SC D + T+S D T +W I + + +
Sbjct: 140 REGN-VRVSRELAG----HTGYLSCCRFLDD-NQIVTSSGDTTCALWDIETGQQTTTFTG 193
Query: 195 HDDAVNSVVSSSEGLIF-TGSADGTVKVWK-REQHGKGTKHSLAQTLLKQECAVTALVVS 252
H V S+ + + +F +G+ D + K+W RE + QT E + A+
Sbjct: 194 HTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCR-------QTFTGHESDINAICFF 246
Query: 253 SSRSIVYCGSSDGLVNFWE-REKQ----LSHGGVLKGHKLAVLCLAAAGKLVFSGSADKT 307
+ + GS D ++ R Q SH ++ G + + + +G+L+ +G D
Sbjct: 247 PNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICG--ITSVSFSKSGRLLLAGYDDFN 304
Query: 308 ICVWRRDGAIHTCLSVLTGHTGPVKCLAVEED 339
VW D VL GH V CL V +D
Sbjct: 305 CNVW--DALKADRAGVLAGHDNRVSCLGVTDD 334
Score = 32.7 bits (73), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 32/153 (20%), Positives = 55/153 (35%), Gaps = 24/153 (15%)
Query: 49 SLAASKDLLYTGSDSKNIRVWKNLKEFC--GFKASSGLVKAIVI--SGEKIFTGHQDGKI 104
SLA L +G+ + ++W + C F + AI +G TG D
Sbjct: 202 SLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATC 261
Query: 105 RVWKISPKNQ----------------SVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTA 148
R++ + + S K L D F ++ + ++ R
Sbjct: 262 RLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNV----WDALKADRAG 317
Query: 149 LWIRHSDAVSCMSLDQDCGLLYTASWDRTFKVW 181
+ H + VSC+ + D + T SWD K+W
Sbjct: 318 VLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIW 350
>pdb|2PBI|B Chain B, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
pdb|2PBI|D Chain D, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
Length = 354
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 36/140 (25%), Positives = 66/140 (47%), Gaps = 8/140 (5%)
Query: 175 DRTFKVWRISDSKCLESVSAHDDAVNSVVSSSEGLIF-TGSADGTVKVWKREQHGKGTKH 233
D+ VW + +C+++ H+ VNSV G F +GS D T +++ + +
Sbjct: 219 DKKAMVWDMRSGQCVQAFETHESDVNSVRYYPSGDAFASGSDDATCRLYDLRADREVAIY 278
Query: 234 SLAQTLLKQECAVTALVVSSSRSIVYCGSSDGLVNFWEREKQLSHGGVLKGH--KLAVLC 291
S + +++ S S +++ G +D +N W+ K S +L GH +++ L
Sbjct: 279 SKESIIF----GASSVDFSLSGRLLFAGYNDYTINVWDVLKG-SRVSILFGHENRVSTLR 333
Query: 292 LAAAGKLVFSGSADKTICVW 311
++ G SGS D T+ VW
Sbjct: 334 VSPDGTAFCSGSWDHTLRVW 353
Score = 38.9 bits (89), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 65/276 (23%), Positives = 102/276 (36%), Gaps = 46/276 (16%)
Query: 94 KIFTGHQDGKIRVWKISPKNQSVHKRAGTLPTLKDIF-----------------KSSIKP 136
+I + QDGK+ VW N+ + A T+P + K S+ P
Sbjct: 78 RIVSSSQDGKVIVWDSFTTNK---EHAVTMPCTWVMACAYAPSGCAIACGGLDNKCSVYP 134
Query: 137 SNY-----IEVRRHRTALWIRHSDAVSCMSLDQDCGLLYTASWDRTFKVWRISDSKCLES 191
+ + ++ A+ H++ +S S + TAS D T +W + + L+S
Sbjct: 135 LTFDKNENMAAKKKSVAM---HTNYLSACSFTNSDMQILTASGDGTCALWDVESGQLLQS 191
Query: 192 VSAH--DDAVNSVVSSSEGLIF-TGSADGTVKVWKREQHGKGTKHSLAQTLLKQECAVTA 248
H D + S G F +G D VW Q E V +
Sbjct: 192 FHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRS------GQCVQAFETHESDVNS 245
Query: 249 LVVSSSRSIVYCGSSDGLVNFW----EREKQL-SHGGVLKGHKLAVLCLAAAGKLVFSGS 303
+ S GS D + +RE + S ++ G L +G+L+F+G
Sbjct: 246 VRYYPSGDAFASGSDDATCRLYDLRADREVAIYSKESIIFGASSVDFSL--SGRLLFAGY 303
Query: 304 ADKTICVWRRDGAIHTCLSVLTGHTGPVKCLAVEED 339
D TI VW D + +S+L GH V L V D
Sbjct: 304 NDYTINVW--DVLKGSRVSILFGHENRVSTLRVSPD 337
Score = 33.1 bits (74), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 31/135 (22%), Positives = 49/135 (36%), Gaps = 38/135 (28%)
Query: 53 SKDLLYTGSDSKNIRVW--KNLKEFCGFKASSGLVKA----IVISGEKIFTGHQDGKIRV 106
S D +GSD R++ + +E + S + A +SG +F G+ D I V
Sbjct: 251 SGDAFASGSDDATCRLYDLRADREVAIYSKESIIFGASSVDFSLSGRLLFAGYNDYTINV 310
Query: 107 WKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDC 166
W D+ K S R ++ H + VS + + D
Sbjct: 311 W--------------------DVLKGS------------RVSILFGHENRVSTLRVSPDG 338
Query: 167 GLLYTASWDRTFKVW 181
+ SWD T +VW
Sbjct: 339 TAFCSGSWDHTLRVW 353
>pdb|2YNP|A Chain A, Yeast Betaprime Cop 1-604 With Ktktn Motif
Length = 604
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 59/281 (20%), Positives = 106/281 (37%), Gaps = 52/281 (18%)
Query: 50 LAASKDLLYTGSDSKNIRV--WKNLKEFCGFKASSGLVKAIVISGEK--IFTGHQDGKIR 105
A K+ + GSD IRV + ++ F+A +++I + K + +G D ++
Sbjct: 63 FIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVK 122
Query: 106 VWK----------------------ISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVR 143
+W +PK+ S T+K P+ +
Sbjct: 123 LWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTG 182
Query: 144 RHRTALWIRHSDAVSCMSLDQDCGLLYTASWDRTFKVWRISDSKCLESVSAHDDAVN-SV 202
+ R ++ + D + TAS D T K+W C+ ++ H V+ +V
Sbjct: 183 QERGVNYVDYYPL-------PDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAV 235
Query: 203 VSSSEGLIFTGSADGTVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSSSRSIVYCGS 262
+ +I +GS DGT+K+W + + +L L + C T + ++ + G
Sbjct: 236 FHPTLPIIISGSEDGTLKIWNSSTY--KVEKTLNVGLERSWCIATH--PTGRKNYIASGF 291
Query: 263 SDGLVNFWEREKQLSHGGVLK-GHKLAVLCLAAAGKLVFSG 302
+G VL G+ L L GKLV+SG
Sbjct: 292 DNGFT-------------VLSLGNDEPTLSLDPVGKLVWSG 319
Score = 35.8 bits (81), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 37/163 (22%), Positives = 65/163 (39%), Gaps = 13/163 (7%)
Query: 175 DRTFKVWRISDSKCLESVSAHDDAVNSV-VSSSEGLIFTGSADGTVKVWKREQHGKGTKH 233
D +V+ + + + AH D + S+ V ++ + +GS D TVK+W E +
Sbjct: 76 DFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENN-----W 130
Query: 234 SLAQTLLKQECAVTALVVSSSRSIVYC-GSSDGLVNFWEREKQLSHGGVLKGHKLAVLCL 292
+L QT E V + + + G D V W + + + G + V +
Sbjct: 131 ALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYV 190
Query: 293 ----AAAGKLVFSGSADKTICVWRRDGAIHTCLSVLTGHTGPV 331
+ + S D TI +W D +C++ L GH V
Sbjct: 191 DYYPLPDKPYMITASDDLTIKIW--DYQTKSCVATLEGHMSNV 231
>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length
Murine Apaf-1
Length = 1256
Score = 42.0 bits (97), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 66/278 (23%), Positives = 115/278 (41%), Gaps = 43/278 (15%)
Query: 47 IYSLAASKDLLYTGSDSKNIRVWKNLKEFCGFKASSGLVKAIVISGEKIFTGHQDGKIRV 106
I+ A + +L D K+ V +N +EF + G + F +++
Sbjct: 530 IHEFVAYRHIL----DEKDCAVCENFQEFLSLNGH--------LLGRQPFPN----IVQL 573
Query: 107 WKISPKNQSVHKRA----------GTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDA 156
P+ V+++A G L L+ I K +IK + + VR H +DA
Sbjct: 574 GLCEPETSEVYRQAKLQAKQEGDTGRL-YLEWINKKTIKNLSRLVVRPH--------TDA 624
Query: 157 VSCMSLDQDCGLLYTASWDRTFKVWRISDSKCLESVSAHDDAV-NSVVSSSEGLIFTGSA 215
V QD + + D+T +V++ + L + AH+D V SS + I T SA
Sbjct: 625 VYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIATCSA 684
Query: 216 DGTVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSSSRSIVYCGSSDGLVNFWEREKQ 275
D VK+W GK H+ + + C S+ ++ GS+D + W+ ++
Sbjct: 685 DKKVKIWDSAT-GKLV-HTYDEHSEQVNCC--HFTNKSNHLLLATGSNDFFLKLWDLNQK 740
Query: 276 LSHGGVLKGHKLAV--LCLAAAGKLVFSGSADKTICVW 311
+ GH +V + +L+ S SAD T+ +W
Sbjct: 741 ECRNTMF-GHTNSVNHCRFSPDDELLASCSADGTLRLW 777
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/122 (24%), Positives = 49/122 (40%), Gaps = 9/122 (7%)
Query: 153 HSDAVSCMSLDQDCGLLYTASWDRTFKVWRISDSKCLESVSAHDDAVNS---VVSSSEGL 209
H D V C + D + T S D+ K+W + K + + H + VN S+ L
Sbjct: 663 HEDEVLCCAFSSDDSYIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLL 722
Query: 210 IFTGSADGTVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSSSRSIVYCGSSDGLVNF 269
+ TGS D +K+W Q T+ +V S ++ S+DG +
Sbjct: 723 LATGSNDFFLKLWDLNQ------KECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRL 776
Query: 270 WE 271
W+
Sbjct: 777 WD 778
Score = 33.5 bits (75), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 40/183 (21%), Positives = 69/183 (37%), Gaps = 36/183 (19%)
Query: 74 EFCGFKASSGLVKAIVISGEKIFT---GHQ----------DGK----------IRVWKIS 110
E+ F G +K I + ++F+ GH+ DGK I+VW
Sbjct: 981 EYVAFGDEDGAIKIIELPNNRVFSSGVGHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQ 1040
Query: 111 PKN----QSVHKRAGTLPTLKDI------FKSSIKPSNYIEVRRHRTALWIRHSDAVSCM 160
+ Q+ + L+D F ++K N I R R + H V
Sbjct: 1041 TGDYVFLQAHQETVKDFRLLQDSRLLSWSFDGTVKVWNVITGRIERD--FTCHQGTVLSC 1098
Query: 161 SLDQDCGLLYTASWDRTFKVWRISDSKCLESVSAHDDAVNSVVSSSEGLIF-TGSADGTV 219
++ D + S D+T K+W L + H+ V S +G++ TG +G +
Sbjct: 1099 AISSDATKFSSTSADKTAKIWSFDLLSPLHELKGHNGCVRCSAFSLDGILLATGDDNGEI 1158
Query: 220 KVW 222
++W
Sbjct: 1159 RIW 1161
Score = 28.5 bits (62), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 40/87 (45%), Gaps = 10/87 (11%)
Query: 34 NGLIGSLVRE----EGHIYSLAASKDLLYTGSDS--KNIRVWKN--LKEFCGFKASSGLV 85
N + G + R+ +G + S A S D S S K ++W L K +G V
Sbjct: 1078 NVITGRIERDFTCHQGTVLSCAISSDATKFSSTSADKTAKIWSFDLLSPLHELKGHNGCV 1137
Query: 86 K--AIVISGEKIFTGHQDGKIRVWKIS 110
+ A + G + TG +G+IR+W +S
Sbjct: 1138 RCSAFSLDGILLATGDDNGEIRIWNVS 1164
>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1
Length = 1249
Score = 42.0 bits (97), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 66/278 (23%), Positives = 115/278 (41%), Gaps = 43/278 (15%)
Query: 47 IYSLAASKDLLYTGSDSKNIRVWKNLKEFCGFKASSGLVKAIVISGEKIFTGHQDGKIRV 106
I+ A + +L D K+ V +N +EF + G + F +++
Sbjct: 523 IHEFVAYRHIL----DEKDCAVCENFQEFLSLNGH--------LLGRQPFPN----IVQL 566
Query: 107 WKISPKNQSVHKRA----------GTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDA 156
P+ V+++A G L L+ I K +IK + + VR H +DA
Sbjct: 567 GLCEPETSEVYRQAKLQAKQEGDTGRL-YLEWINKKTIKNLSRLVVRPH--------TDA 617
Query: 157 VSCMSLDQDCGLLYTASWDRTFKVWRISDSKCLESVSAHDDAV-NSVVSSSEGLIFTGSA 215
V QD + + D+T +V++ + L + AH+D V SS + I T SA
Sbjct: 618 VYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIATCSA 677
Query: 216 DGTVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSSSRSIVYCGSSDGLVNFWEREKQ 275
D VK+W GK H+ + + C S+ ++ GS+D + W+ ++
Sbjct: 678 DKKVKIWDSAT-GKLV-HTYDEHSEQVNCC--HFTNKSNHLLLATGSNDFFLKLWDLNQK 733
Query: 276 LSHGGVLKGHKLAV--LCLAAAGKLVFSGSADKTICVW 311
+ GH +V + +L+ S SAD T+ +W
Sbjct: 734 ECRNTMF-GHTNSVNHCRFSPDDELLASCSADGTLRLW 770
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/122 (24%), Positives = 49/122 (40%), Gaps = 9/122 (7%)
Query: 153 HSDAVSCMSLDQDCGLLYTASWDRTFKVWRISDSKCLESVSAHDDAVNS---VVSSSEGL 209
H D V C + D + T S D+ K+W + K + + H + VN S+ L
Sbjct: 656 HEDEVLCCAFSSDDSYIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLL 715
Query: 210 IFTGSADGTVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSSSRSIVYCGSSDGLVNF 269
+ TGS D +K+W Q T+ +V S ++ S+DG +
Sbjct: 716 LATGSNDFFLKLWDLNQ------KECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRL 769
Query: 270 WE 271
W+
Sbjct: 770 WD 771
Score = 33.5 bits (75), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 40/183 (21%), Positives = 69/183 (37%), Gaps = 36/183 (19%)
Query: 74 EFCGFKASSGLVKAIVISGEKIFT---GHQ----------DGK----------IRVWKIS 110
E+ F G +K I + ++F+ GH+ DGK I+VW
Sbjct: 974 EYVAFGDEDGAIKIIELPNNRVFSSGVGHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQ 1033
Query: 111 PKN----QSVHKRAGTLPTLKDI------FKSSIKPSNYIEVRRHRTALWIRHSDAVSCM 160
+ Q+ + L+D F ++K N I R R + H V
Sbjct: 1034 TGDYVFLQAHQETVKDFRLLQDSRLLSWSFDGTVKVWNVITGRIERD--FTCHQGTVLSC 1091
Query: 161 SLDQDCGLLYTASWDRTFKVWRISDSKCLESVSAHDDAVNSVVSSSEGLIF-TGSADGTV 219
++ D + S D+T K+W L + H+ V S +G++ TG +G +
Sbjct: 1092 AISSDATKFSSTSADKTAKIWSFDLLSPLHELKGHNGCVRCSAFSLDGILLATGDDNGEI 1151
Query: 220 KVW 222
++W
Sbjct: 1152 RIW 1154
Score = 28.1 bits (61), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 40/87 (45%), Gaps = 10/87 (11%)
Query: 34 NGLIGSLVRE----EGHIYSLAASKDLLYTGSDS--KNIRVWKN--LKEFCGFKASSGLV 85
N + G + R+ +G + S A S D S S K ++W L K +G V
Sbjct: 1071 NVITGRIERDFTCHQGTVLSCAISSDATKFSSTSADKTAKIWSFDLLSPLHELKGHNGCV 1130
Query: 86 K--AIVISGEKIFTGHQDGKIRVWKIS 110
+ A + G + TG +G+IR+W +S
Sbjct: 1131 RCSAFSLDGILLATGDDNGEIRIWNVS 1157
>pdb|3MKQ|A Chain A, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
pdb|3MKQ|C Chain C, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
pdb|3MKQ|E Chain E, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
Length = 814
Score = 41.6 bits (96), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 59/281 (20%), Positives = 106/281 (37%), Gaps = 52/281 (18%)
Query: 50 LAASKDLLYTGSDSKNIRV--WKNLKEFCGFKASSGLVKAIVISGEK--IFTGHQDGKIR 105
A K+ + GSD IRV + ++ F+A +++I + K + +G D ++
Sbjct: 63 FIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVK 122
Query: 106 VWK----------------------ISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVR 143
+W +PK+ S T+K P+ +
Sbjct: 123 LWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTG 182
Query: 144 RHRTALWIRHSDAVSCMSLDQDCGLLYTASWDRTFKVWRISDSKCLESVSAHDDAVN-SV 202
+ R ++ + D + TAS D T K+W C+ ++ H V+ +V
Sbjct: 183 QERGVNYVDYYPL-------PDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAV 235
Query: 203 VSSSEGLIFTGSADGTVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSSSRSIVYCGS 262
+ +I +GS DGT+K+W + + +L L + C T + ++ + G
Sbjct: 236 FHPTLPIIISGSEDGTLKIWNSSTY--KVEKTLNVGLERSWCIATH--PTGRKNYIASGF 291
Query: 263 SDGLVNFWEREKQLSHGGVLK-GHKLAVLCLAAAGKLVFSG 302
+G VL G+ L L GKLV+SG
Sbjct: 292 DNGFT-------------VLSLGNDEPTLSLDPVGKLVWSG 319
Score = 35.0 bits (79), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 37/163 (22%), Positives = 65/163 (39%), Gaps = 13/163 (7%)
Query: 175 DRTFKVWRISDSKCLESVSAHDDAVNSV-VSSSEGLIFTGSADGTVKVWKREQHGKGTKH 233
D +V+ + + + AH D + S+ V ++ + +GS D TVK+W E +
Sbjct: 76 DFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENN-----W 130
Query: 234 SLAQTLLKQECAVTALVVSSSRSIVYC-GSSDGLVNFWEREKQLSHGGVLKGHKLAVLCL 292
+L QT E V + + + G D V W + + + G + V +
Sbjct: 131 ALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYV 190
Query: 293 ----AAAGKLVFSGSADKTICVWRRDGAIHTCLSVLTGHTGPV 331
+ + S D TI +W D +C++ L GH V
Sbjct: 191 DYYPLPDKPYMITASDDLTIKIW--DYQTKSCVATLEGHMSNV 231
>pdb|3IZA|A Chain A, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|B Chain B, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|C Chain C, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|D Chain D, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|E Chain E, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|F Chain F, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|G Chain G, Structure Of An Apoptosome-Procaspase-9 Card Complex
Length = 1263
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 42/165 (25%), Positives = 71/165 (43%), Gaps = 14/165 (8%)
Query: 153 HSDAVSCMSLDQDCGLLYTASWDRTFKVWRISDSKCLESVSAHDDAV-NSVVSSSEGLIF 211
H+DAV +D + + D+T +V++ + L + AH+D V S+ + I
Sbjct: 620 HTDAVYHACFSEDGQRIASCGADKTLQVFKAETGEKLLEIKAHEDEVLCCAFSTDDRFIA 679
Query: 212 TGSADGTVKVWKR---EQHGKGTKHSLAQTLLKQECAVTALVVSSSRSIVYCGSSDGLVN 268
T S D VK+W E +HS ++ SS ++ GSSD +
Sbjct: 680 TCSVDKKVKIWNSMTGELVHTYDEHS-------EQVNCCHFTNSSHHLLLATGSSDCFLK 732
Query: 269 FWEREKQLSHGGVLKGHKLAV--LCLAAAGKLVFSGSADKTICVW 311
W+ ++ + GH +V + KL+ S SAD T+ +W
Sbjct: 733 LWDLNQKECRNTMF-GHTNSVNHCRFSPDDKLLASCSADGTLKLW 776
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/122 (24%), Positives = 49/122 (40%), Gaps = 9/122 (7%)
Query: 153 HSDAVSCMSLDQDCGLLYTASWDRTFKVWRISDSKCLESVSAHDDAVNS---VVSSSEGL 209
H D V C + D + T S D+ K+W + + + H + VN SS L
Sbjct: 662 HEDEVLCCAFSTDDRFIATCSVDKKVKIWNSMTGELVHTYDEHSEQVNCCHFTNSSHHLL 721
Query: 210 IFTGSADGTVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSSSRSIVYCGSSDGLVNF 269
+ TGS+D +K+W Q T+ +V S ++ S+DG +
Sbjct: 722 LATGSSDCFLKLWDLNQ------KECRNTMFGHTNSVNHCRFSPDDKLLASCSADGTLKL 775
Query: 270 WE 271
W+
Sbjct: 776 WD 777
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/95 (28%), Positives = 45/95 (47%), Gaps = 3/95 (3%)
Query: 152 RHSDAVSCMSLDQDCG--LLYTASWDRTFKVWRISDSKCLESVSAHDDAVNSV-VSSSEG 208
HS+ V+C LL T S D K+W ++ +C ++ H ++VN S +
Sbjct: 703 EHSEQVNCCHFTNSSHHLLLATGSSDCFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDK 762
Query: 209 LIFTGSADGTVKVWKREQHGKGTKHSLAQTLLKQE 243
L+ + SADGT+K+W + ++ Q L E
Sbjct: 763 LLASCSADGTLKLWDATSANERKSINVKQFFLNLE 797
Score = 29.6 bits (65), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 50/201 (24%), Positives = 83/201 (41%), Gaps = 30/201 (14%)
Query: 46 HIYSLAASKDLLYTGSDSKNIRVWKNLKEFCGF-KASSGLVKAI-VISGEKIFTGHQDGK 103
HI A K L+ + SD I+VW + C F + VK ++ ++ + DG
Sbjct: 1014 HIQFTADEKTLI-SSSDDAEIQVWNWQLDKCIFLRGHQETVKDFRLLKNSRLLSWSFDGT 1072
Query: 104 IRVWKI--SPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTA-LW---------- 150
++VW I K + GT+ + DI + K S+ +TA +W
Sbjct: 1073 VKVWNIITGNKEKDFVCHQGTVLSC-DISHDATKFSS---TSADKTAKIWSFDLLLPLHE 1128
Query: 151 IR-HSDAVSCMSLDQDCGLLYTASWDRTFKVWRISDSKCL--------ESVSAHDDAVNS 201
+R H+ V C + D LL T + ++W +S+ + L E + H V
Sbjct: 1129 LRGHNGCVRCSAFSVDSTLLATGDDNGEIRIWNVSNGELLHLCAPLSEEGAATHGGWVTD 1188
Query: 202 VVSSSEGLIFTGSADGTVKVW 222
+ S +G + SA G +K W
Sbjct: 1189 LCFSPDGKMLI-SAGGYIKWW 1208
Score = 29.6 bits (65), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 57/265 (21%), Positives = 101/265 (38%), Gaps = 37/265 (13%)
Query: 92 GEKIFTGHQDGKIRVWKISP--KNQSV--HKRAGTLPTLKDIFKSSIKPSNYIEVRRHRT 147
G T D IR+W+ KN +V + + ++ ++ +++ RT
Sbjct: 900 GSSFLTSSDDQTIRLWETKKVCKNSAVMLKQEVDVVFQENEVMVLAVDHIRRLQLINGRT 959
Query: 148 ALWIRHSDA-VSCMSLDQDCGLLYTASWDRTFKVWRISDSKCLESVSAHDDAVNSV-VSS 205
++A VSC L + + ++ + +++ +S H V + ++
Sbjct: 960 GQIDYLTEAQVSCCCLSPHLQYIAFGDENGAIEILELVNNRIFQSRFQHKKTVWHIQFTA 1019
Query: 206 SEGLIFTGSADGTVKVWKREQHGKGTKHSLAQTLL---KQECAVTALVVSSSRSIVYCGS 262
E + + S D ++VW + L + + QE ++ +SR + + S
Sbjct: 1020 DEKTLISSSDDAEIQVWNWQ---------LDKCIFLRGHQETVKDFRLLKNSRLLSW--S 1068
Query: 263 SDGLVNFW-------EREKQLSHGGVLKGHKLAVLCLAAAGKLVFSG-SADKTICVWRRD 314
DG V W E++ G VL C + FS SADKT +W D
Sbjct: 1069 FDGTVKVWNIITGNKEKDFVCHQGTVLS-------CDISHDATKFSSTSADKTAKIWSFD 1121
Query: 315 GAIHTCLSVLTGHTGPVKCLAVEED 339
+ L L GH G V+C A D
Sbjct: 1122 LLLP--LHELRGHNGCVRCSAFSVD 1144
>pdb|2YNO|A Chain A, Yeast Betaprime Cop 1-304h6
pdb|2YNO|B Chain B, Yeast Betaprime Cop 1-304h6
Length = 310
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 42/205 (20%), Positives = 79/205 (38%), Gaps = 34/205 (16%)
Query: 50 LAASKDLLYTGSDSKNIRV--WKNLKEFCGFKASSGLVKAIVISGEK--IFTGHQDGKIR 105
A K+ + GSD IRV + ++ F+A +++I + K + +G D ++
Sbjct: 63 FIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVK 122
Query: 106 VWK----------------------ISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVR 143
+W +PK+ S T+K P+ +
Sbjct: 123 LWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTG 182
Query: 144 RHRTALWIRHSDAVSCMSLDQDCGLLYTASWDRTFKVWRISDSKCLESVSAHDDAVN-SV 202
+ R ++ + D + TAS D T K+W C+ ++ H V+ +V
Sbjct: 183 QERGVNYVDYYPL-------PDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAV 235
Query: 203 VSSSEGLIFTGSADGTVKVWKREQH 227
+ +I +GS DGT+K+W +
Sbjct: 236 FHPTLPIIISGSEDGTLKIWNSSTY 260
Score = 37.4 bits (85), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 37/163 (22%), Positives = 65/163 (39%), Gaps = 13/163 (7%)
Query: 175 DRTFKVWRISDSKCLESVSAHDDAVNSV-VSSSEGLIFTGSADGTVKVWKREQHGKGTKH 233
D +V+ + + + AH D + S+ V ++ + +GS D TVK+W E +
Sbjct: 76 DFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNW----- 130
Query: 234 SLAQTLLKQECAVTALVVSSSRSIVYC-GSSDGLVNFWEREKQLSHGGVLKGHKLAVLCL 292
+L QT E V + + + G D V W + + + G + V +
Sbjct: 131 ALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYV 190
Query: 293 ----AAAGKLVFSGSADKTICVWRRDGAIHTCLSVLTGHTGPV 331
+ + S D TI +W D +C++ L GH V
Sbjct: 191 DYYPLPDKPYMITASDDLTIKIW--DYQTKSCVATLEGHMSNV 231
>pdb|2YNN|A Chain A, Yeast Betaprime Cop 1-304 With Ktktn Motif
Length = 304
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 42/205 (20%), Positives = 79/205 (38%), Gaps = 34/205 (16%)
Query: 50 LAASKDLLYTGSDSKNIRV--WKNLKEFCGFKASSGLVKAIVISGEK--IFTGHQDGKIR 105
A K+ + GSD IRV + ++ F+A +++I + K + +G D ++
Sbjct: 63 FIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVK 122
Query: 106 VWK----------------------ISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVR 143
+W +PK+ S T+K P+ +
Sbjct: 123 LWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTG 182
Query: 144 RHRTALWIRHSDAVSCMSLDQDCGLLYTASWDRTFKVWRISDSKCLESVSAHDDAVN-SV 202
+ R ++ + D + TAS D T K+W C+ ++ H V+ +V
Sbjct: 183 QERGVNYVDYYPL-------PDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAV 235
Query: 203 VSSSEGLIFTGSADGTVKVWKREQH 227
+ +I +GS DGT+K+W +
Sbjct: 236 FHPTLPIIISGSEDGTLKIWNSSTY 260
Score = 37.4 bits (85), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 37/163 (22%), Positives = 65/163 (39%), Gaps = 13/163 (7%)
Query: 175 DRTFKVWRISDSKCLESVSAHDDAVNSV-VSSSEGLIFTGSADGTVKVWKREQHGKGTKH 233
D +V+ + + + AH D + S+ V ++ + +GS D TVK+W E +
Sbjct: 76 DFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNW----- 130
Query: 234 SLAQTLLKQECAVTALVVSSSRSIVYC-GSSDGLVNFWEREKQLSHGGVLKGHKLAVLCL 292
+L QT E V + + + G D V W + + + G + V +
Sbjct: 131 ALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYV 190
Query: 293 ----AAAGKLVFSGSADKTICVWRRDGAIHTCLSVLTGHTGPV 331
+ + S D TI +W D +C++ L GH V
Sbjct: 191 DYYPLPDKPYMITASDDLTIKIW--DYQTKSCVATLEGHMSNV 231
>pdb|1NR0|A Chain A, Two Seven-Bladed Beta-Propeller Domains Revealed By The
Structure Of A C. Elegans Homologue Of Yeast Actin
Interacting Protein 1 (Aip1).
pdb|1PEV|A Chain A, Crystal Structure Of The Actin Interacting Protein From
Caenorhabditis Elegans
Length = 611
Score = 38.1 bits (87), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 41/155 (26%), Positives = 61/155 (39%), Gaps = 19/155 (12%)
Query: 88 IVISGEKIFT--GHQDGKIRVWKISPKNQS-----VHK---------RAGTLPTLKDIFK 131
+ +S +K F G QD K+ V+K+S + S VH G D +
Sbjct: 454 VALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEITSVAFSNNGAFLVATDQSR 513
Query: 132 SSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCGLLYTASWDRTFKVWRI---SDSKC 188
I S T W H+ V+C+S D L T S D + VW + SD
Sbjct: 514 KVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPSDHPI 573
Query: 189 LESVSAHDDAVNSVVSSSEGLIFTGSADGTVKVWK 223
+ + +VNSV+ +E I + D +K W
Sbjct: 574 IIKGAHAMSSVNSVIWLNETTIVSAGQDSNIKFWN 608
Score = 33.9 bits (76), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 28/131 (21%), Positives = 61/131 (46%), Gaps = 10/131 (7%)
Query: 151 IRHSDAVSCMSLDQDCGLLYTASWDRTFKVWRISDSKCLESVSAH---DDAVNSVVSSSE 207
+ HS +V ++ D + +AS D+T K+W ++ K +++ +D ++ + +
Sbjct: 236 VAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQ 295
Query: 208 GLIFTGSADGTVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSSSRSIVYCGSSDGLV 267
L+ + SA+G + E S+ Q A+TAL S+ ++ ++G +
Sbjct: 296 ALV-SISANGFINFVNPEL------GSIDQVRYGHNKAITALSSSADGKTLFSADAEGHI 348
Query: 268 NFWEREKQLSH 278
N W+ +S+
Sbjct: 349 NSWDISTGISN 359
Score = 29.3 bits (64), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 37/170 (21%), Positives = 69/170 (40%), Gaps = 18/170 (10%)
Query: 153 HSDAVSCMSLDQDCGLLYTASWDRTFKVWRIS---DSKCLESVSAHDDAVNSVVSSSEGL 209
H+ A++ +S D L++A + W IS ++ V H + + ++S+G
Sbjct: 323 HNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDV--HATMITGIKTTSKGD 380
Query: 210 IFTGSADGTVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSSSRSIVYCGSSDGLVNF 269
+FT S D +KV G + ++A L Q L VS+ I
Sbjct: 381 LFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPL---GLAVSADGDIAVAAC------- 430
Query: 270 WEREKQLSHGGVLK---GHKLAVLCLAAAGKLVFSGSADKTICVWRRDGA 316
++ SHG + + + + + L+ + V G D + V++ GA
Sbjct: 431 YKHIAIYSHGKLTEVPISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGA 480
>pdb|3JRO|A Chain A, Nup84-Nup145c-Sec13 Edge Element Of The Npc Lattice
Length = 753
Score = 37.0 bits (84), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 24/41 (58%)
Query: 291 CLAAAGKLVFSGSADKTICVWRRDGAIHTCLSVLTGHTGPV 331
L GK + + S+DKTI ++ +G H + LTGH GPV
Sbjct: 16 VLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPV 56
>pdb|1R5M|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Sif2
Length = 425
Score = 36.6 bits (83), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 32/152 (21%), Positives = 60/152 (39%), Gaps = 6/152 (3%)
Query: 139 YIEVRRHRTALWIRHSDAVSCMSLDQDCGLLYTASWDRTFKVWRISDSKCLESVSAHDDA 198
Y + T I H +S + + LL +AS D T ++W + H +
Sbjct: 232 YQITEKTPTGKLIGHHGPISVLEFNDTNKLLLSASDDGTLRIWHGGNGNSQNCFYGHSQS 291
Query: 199 VNSVVSSSEGLIFTGSADGTVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSSSRSIV 258
+ S + + + S DG+V++W +Q ++L + + A +S
Sbjct: 292 IVSASWVGDDKVISCSMDGSVRLWSLKQ------NTLLALSIVDGVPIFAGRISQDGQKY 345
Query: 259 YCGSSDGLVNFWEREKQLSHGGVLKGHKLAVL 290
DG VN ++ +K S L G++ +L
Sbjct: 346 AVAFMDGQVNVYDLKKLNSKSRSLYGNRDGIL 377
Score = 32.3 bits (72), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 38/89 (42%), Gaps = 9/89 (10%)
Query: 26 QFEENLPQNGLIGSLVREEGHIYSLA--ASKDLLYTGSDSKNIRVW---KNLKEFCGFKA 80
Q E P LIG G I L + LL + SD +R+W + C +
Sbjct: 233 QITEKTPTGKLIG----HHGPISVLEFNDTNKLLLSASDDGTLRIWHGGNGNSQNCFYGH 288
Query: 81 SSGLVKAIVISGEKIFTGHQDGKIRVWKI 109
S +V A + +K+ + DG +R+W +
Sbjct: 289 SQSIVSASWVGDDKVISCSMDGSVRLWSL 317
>pdb|3MMY|A Chain A, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|C Chain C, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|E Chain E, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|G Chain G, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
Length = 368
Score = 36.2 bits (82), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 30/135 (22%), Positives = 59/135 (43%), Gaps = 15/135 (11%)
Query: 153 HSDAVSCMSLDQDCGLLYTASWDRTFKVWRISDSKCLESVSAHDDAVNS---VVSSSEGL 209
H+ V + D ++TAS D+T K+W +S ++ ++ ++ HD V + + + +
Sbjct: 85 HTGPVLDVCWSDDGSKVFTASCDKTAKMWDLSSNQAIQ-IAQHDAPVKTIHWIKAPNYSC 143
Query: 210 IFTGSADGTVKVWKREQHGKGTKHSLAQTLLKQECAVT------ALVVSSSRSIVYCGSS 263
+ TGS D T+K W + + + L + C A+V ++ R ++
Sbjct: 144 VMTGSWDKTLKFWDTR-----SSNPMMVLQLPERCYCADVIYPMAVVATAERGLIVYQLE 198
Query: 264 DGLVNFWEREKQLSH 278
+ F E L H
Sbjct: 199 NQPSEFRRIESPLKH 213
>pdb|3JRP|A Chain A, Sec13 With Nup145c (Aa109-179) Insertion Blade
Length = 379
Score = 35.8 bits (81), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 24/41 (58%)
Query: 291 CLAAAGKLVFSGSADKTICVWRRDGAIHTCLSVLTGHTGPV 331
L GK + + S+DKTI ++ +G H + LTGH GPV
Sbjct: 18 VLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPV 58
>pdb|2PM6|B Chain B, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Native Version
pdb|2PM6|D Chain D, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Native Version
pdb|3IKO|A Chain A, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3IKO|D Chain D, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3IKO|G Chain G, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3MZK|A Chain A, Sec13SEC16 COMPLEX, S.CEREVISIAE
pdb|3MZK|D Chain D, Sec13SEC16 COMPLEX, S.CEREVISIAE
pdb|3MZL|A Chain A, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|C Chain C, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|E Chain E, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|G Chain G, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
Length = 297
Score = 35.8 bits (81), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 24/41 (58%)
Query: 291 CLAAAGKLVFSGSADKTICVWRRDGAIHTCLSVLTGHTGPV 331
L GK + + S+DKTI ++ +G H + LTGH GPV
Sbjct: 16 VLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPV 56
>pdb|2PM9|B Chain B, Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT OF THE
Copii Vesicular Coat
Length = 297
Score = 35.8 bits (81), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 23/36 (63%)
Query: 296 GKLVFSGSADKTICVWRRDGAIHTCLSVLTGHTGPV 331
GK + + S+DKTI ++ +G H + LTGH GPV
Sbjct: 21 GKRMATCSSDKTIKIFEVEGETHKLIDTLTGHEGPV 56
>pdb|3OW8|A Chain A, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|B Chain B, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|C Chain C, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|D Chain D, Crystal Structure Of The Wd Repeat-Containing Protein 61
Length = 321
Score = 35.0 bits (79), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 47/195 (24%), Positives = 74/195 (37%), Gaps = 56/195 (28%)
Query: 194 AHDDAVNSVV------SSSEGLIFTGSADGTVKVWKREQHGKGTKHSLAQTLLKQECAVT 247
AHDDA+ SV +SE ++ TGS D VKVWK + + L +L + V
Sbjct: 30 AHDDAIWSVAWGTNKKENSETVV-TGSLDDLVKVWKW----RDERLDLQWSLEGHQLGVV 84
Query: 248 ALVVSSSRSIVYCGSSDGLVNFWERE--KQL-------------------------SHGG 280
++ +S + I S D + W+ E KQ+ +H G
Sbjct: 85 SVDISHTLPIAASSSLDAHIRLWDLENGKQIKSIDAGPVDAWTLAFSPDSQYLATGTHVG 144
Query: 281 VL----------------KGHKLAVLCLAAAGKLVFSGSADKTICVWRRDGAIHTCLSVL 324
+ +G + + + GK + SG+ D I ++ D A L L
Sbjct: 145 KVNIFGVESGKKEYSLDTRGKFILSIAYSPDGKYLASGAIDGIINIF--DIATGKLLHTL 202
Query: 325 TGHTGPVKCLAVEED 339
GH P++ L D
Sbjct: 203 EGHAMPIRSLTFSPD 217
>pdb|2PM7|B Chain B, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Selenomethionine Version
pdb|2PM7|D Chain D, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Selenomethionine Version
Length = 297
Score = 35.0 bits (79), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 22/36 (61%)
Query: 296 GKLVFSGSADKTICVWRRDGAIHTCLSVLTGHTGPV 331
GK + S+DKTI ++ +G H + LTGH GPV
Sbjct: 21 GKRXATCSSDKTIKIFEVEGETHKLIDTLTGHEGPV 56
>pdb|4G56|B Chain B, Crystal Structure Of Full Length Prmt5/mep50 Complexes
From Xenopus Laevis
pdb|4G56|D Chain D, Crystal Structure Of Full Length Prmt5/mep50 Complexes
From Xenopus Laevis
Length = 357
Score = 33.5 bits (75), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 21/83 (25%), Positives = 36/83 (43%), Gaps = 2/83 (2%)
Query: 152 RHSDAVSCMSLDQDCGLLYTASWDRTFKVWRISDSKCLESVSAHDDAVNSVVS--SSEGL 209
H D V +S+ D + D + KVW +S L+S +AH VN V + + +
Sbjct: 137 EHDDIVKTLSVFSDGTQAVSGGKDFSVKVWDLSQKAVLKSYNAHSSEVNCVAACPGKDTI 196
Query: 210 IFTGSADGTVKVWKREQHGKGTK 232
+ DG + +W + T+
Sbjct: 197 FLSCGEDGRILLWDTRKPKPATR 219
>pdb|1EYZ|A Chain A, Structure Of Escherichia Coli Purt-Encoded Glycinamide
Ribonucleotide Transformylase Complexed With Mg And
Amppnp
pdb|1EYZ|B Chain B, Structure Of Escherichia Coli Purt-Encoded Glycinamide
Ribonucleotide Transformylase Complexed With Mg And
Amppnp
pdb|1EZ1|A Chain A, Structure Of Escherichia Coli Purt-Encoded Glycinamide
Ribonucleotide Transformylase Complexed With Mg, Amppnp,
And Gar
pdb|1EZ1|B Chain B, Structure Of Escherichia Coli Purt-Encoded Glycinamide
Ribonucleotide Transformylase Complexed With Mg, Amppnp,
And Gar
Length = 392
Score = 32.3 bits (72), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 45/87 (51%), Gaps = 7/87 (8%)
Query: 181 WRISDSKCL--ESVS--AHDDAVNSVVSSS-EGLIFTGSADGTVKVWKREQHG--KGTKH 233
+R +DS+ L E+V+ + V V+SSS +G F SA+ + WK Q G G
Sbjct: 132 YRFADSESLFREAVADIGYPCIVKPVMSSSGKGQTFIRSAEQLAQAWKYAQQGGRAGAGR 191
Query: 234 SLAQTLLKQECAVTALVVSSSRSIVYC 260
+ + ++K + +T L VS+ + +C
Sbjct: 192 VIVEGVVKFDFEITLLTVSAVDGVHFC 218
>pdb|1KJ8|A Chain A, Crystal Structure Of Purt-Encoded Glycinamide
Ribonucleotide Transformylase In Complex With Mg-Atp And
Gar
pdb|1KJ8|B Chain B, Crystal Structure Of Purt-Encoded Glycinamide
Ribonucleotide Transformylase In Complex With Mg-Atp And
Gar
pdb|1KJ9|A Chain A, Crystal Structure Of Purt-Encoded Glycinamide
Ribonucleotide Transformylase Complexed With Mg-Atp
pdb|1KJ9|B Chain B, Crystal Structure Of Purt-Encoded Glycinamide
Ribonucleotide Transformylase Complexed With Mg-Atp
pdb|1KJI|A Chain A, Crystal Structure Of Glycinamide Ribonucleotide
Transformylase In Complex With Mg-Amppcp
pdb|1KJI|B Chain B, Crystal Structure Of Glycinamide Ribonucleotide
Transformylase In Complex With Mg-Amppcp
pdb|1KJJ|A Chain A, Crystal Structure Of Glycniamide Ribonucleotide
Transformylase In Complex With Mg-Atp-Gamma-S
pdb|1KJJ|B Chain B, Crystal Structure Of Glycniamide Ribonucleotide
Transformylase In Complex With Mg-Atp-Gamma-S
pdb|1KJQ|A Chain A, Crystal Structure Of Glycinamide Ribonucleotide
Transformylase In Complex With Mg-Adp
pdb|1KJQ|B Chain B, Crystal Structure Of Glycinamide Ribonucleotide
Transformylase In Complex With Mg-Adp
Length = 391
Score = 32.3 bits (72), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 45/87 (51%), Gaps = 7/87 (8%)
Query: 181 WRISDSKCL--ESVS--AHDDAVNSVVSSS-EGLIFTGSADGTVKVWKREQHG--KGTKH 233
+R +DS+ L E+V+ + V V+SSS +G F SA+ + WK Q G G
Sbjct: 131 YRFADSESLFREAVADIGYPCIVKPVMSSSGKGQTFIRSAEQLAQAWKYAQQGGRAGAGR 190
Query: 234 SLAQTLLKQECAVTALVVSSSRSIVYC 260
+ + ++K + +T L VS+ + +C
Sbjct: 191 VIVEGVVKFDFEITLLTVSAVDGVHFC 217
>pdb|1PGU|A Chain A, Yeast Actin Interacting Protein 1 (aip1), Se-met Protein,
Monoclinic Crystal Form
pdb|1PGU|B Chain B, Yeast Actin Interacting Protein 1 (aip1), Se-met Protein,
Monoclinic Crystal Form
Length = 615
Score = 32.3 bits (72), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 27/110 (24%), Positives = 48/110 (43%), Gaps = 14/110 (12%)
Query: 165 DCGLLYTASWDRTFKVWRISDSKCLESVSAHDDAVNS----VVSSSEGLIFTGSADGTVK 220
D T D T +VW ++ SKC++ + + + VV++ G I + S DGT+
Sbjct: 263 DSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDGTLN 322
Query: 221 VWKREQHGKGTKHSLAQTLLKQECAVTALVVSSSRSIVYCGSSDGLVNFW 270
++ + +T+ +TAL V+ + GS DG + W
Sbjct: 323 FYELGH------DEVLKTISGHNKGITALTVNP----LISGSYDGRIXEW 362
Score = 28.9 bits (63), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 19/97 (19%), Positives = 46/97 (47%), Gaps = 15/97 (15%)
Query: 140 IEVRRHRTALWIRHSDAVSCMS------------LDQDCGLLYTASWDRTFKVWRIS-DS 186
++ R +T+ W + ++ +S +++D L+ T S D ++ +
Sbjct: 517 LQSREVKTSRWAFRTSKINAISWKPAEKGANEEEIEED--LVATGSLDTNIFIYSVKRPX 574
Query: 187 KCLESVSAHDDAVNSVVSSSEGLIFTGSADGTVKVWK 223
K +++++AH D VN+++ + + + AD +K W
Sbjct: 575 KIIKALNAHKDGVNNLLWETPSTLVSSGADACIKRWN 611
>pdb|1PI6|A Chain A, Yeast Actin Interacting Protein 1 (Aip1), Orthorhombic
Crystal Form
Length = 615
Score = 32.0 bits (71), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 27/110 (24%), Positives = 48/110 (43%), Gaps = 14/110 (12%)
Query: 165 DCGLLYTASWDRTFKVWRISDSKCLESVSAHDDAVNS----VVSSSEGLIFTGSADGTVK 220
D T D T +VW ++ SKC++ + + + VV++ G I + S DGT+
Sbjct: 263 DSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDGTLN 322
Query: 221 VWKREQHGKGTKHSLAQTLLKQECAVTALVVSSSRSIVYCGSSDGLVNFW 270
++ + +T+ +TAL V+ + GS DG + W
Sbjct: 323 FYELGH------DEVLKTISGHNKGITALTVNP----LISGSYDGRIMEW 362
Score = 28.5 bits (62), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 19/97 (19%), Positives = 46/97 (47%), Gaps = 15/97 (15%)
Query: 140 IEVRRHRTALWIRHSDAVSCMS------------LDQDCGLLYTASWDRTFKVWRISDS- 186
++ R +T+ W + ++ +S +++D L+ T S D ++ +
Sbjct: 517 LQSREVKTSRWAFRTSKINAISWKPAEKGANEEEIEED--LVATGSLDTNIFIYSVKRPM 574
Query: 187 KCLESVSAHDDAVNSVVSSSEGLIFTGSADGTVKVWK 223
K +++++AH D VN+++ + + + AD +K W
Sbjct: 575 KIIKALNAHKDGVNNLLWETPSTLVSSGADACIKRWN 611
>pdb|2GTH|A Chain A, Crystal Structure Of The Wildtype Mhv Coronavirus
Non-Structural Protein Nsp15
Length = 370
Score = 31.6 bits (70), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 53/217 (24%), Positives = 86/217 (39%), Gaps = 63/217 (29%)
Query: 68 VWKNLKEFCGFKASSGLVKAIVISGEKIFTGHQDGKIRVWKIS---PKNQSVHKRAGTLP 124
V NL F +G + VI GEK+ Q+ + V+K + P N +V A
Sbjct: 6 VVYNLVNAGHFDGRAGELPCAVI-GEKVIAKIQNEDVVVFKNNTPFPTNVAVELFA---- 60
Query: 125 TLKDIFKSSIKPSNYIEVRRHRT-------ALWIRHSDAVSCMSLDQDCGLLYTASWDRT 177
K SI+P +++ R+ LW D+V C S T
Sbjct: 61 ------KRSIRPHPELKLFRNLNIDVCWSHVLWDYAKDSVFCSS---------------T 99
Query: 178 FKVWRISDSKCLESVSAHDDAVNSVVSSSEGLIFTGSADGTVKVWKREQHG---KGTK-H 233
+KV + +D +C+ES++ ++F G +G ++ +K+ ++G TK
Sbjct: 100 YKVCKYTDLQCIESLN---------------VLFDGRDNGALEAFKKCRNGVYINTTKIK 144
Query: 234 SLAQTLLKQECAVTALVVSSSRSIVYCGSSDGLVNFW 270
SL+ Q + +VV G SD V FW
Sbjct: 145 SLSMIKGPQRADLNGVVVEK------VGDSD--VEFW 173
>pdb|1X9Y|A Chain A, The Prostaphopain B Structure
pdb|1X9Y|B Chain B, The Prostaphopain B Structure
pdb|1X9Y|C Chain C, The Prostaphopain B Structure
pdb|1X9Y|D Chain D, The Prostaphopain B Structure
Length = 367
Score = 31.6 bits (70), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 32/52 (61%), Gaps = 3/52 (5%)
Query: 89 VISGEKIFTGHQDGKIRVWKISPKNQSVHKR--AGTL-PTLKDIFKSSIKPS 137
V++ EK F +DGK+R+ K +P ++ ++ A T+ P LK K+++ P+
Sbjct: 124 VLTDEKGFYFEEDGKVRLVKATPLANNIKEKESAKTVSPQLKQELKTTVTPT 175
>pdb|2GTI|A Chain A, Mutation Of Mhv Coronavirus Non-Structural Protein Nsp15
(F307l)
Length = 370
Score = 31.2 bits (69), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 40/171 (23%), Positives = 70/171 (40%), Gaps = 51/171 (29%)
Query: 68 VWKNLKEFCGFKASSGLVKAIVISGEKIFTGHQDGKIRVWKIS---PKNQSVHKRAGTLP 124
V NL F +G + VI GEK+ Q+ + V+K + P N +V A
Sbjct: 6 VVYNLVNAGHFDGRAGELPCAVI-GEKVIAKIQNEDVVVFKNNTPFPTNVAVELFA---- 60
Query: 125 TLKDIFKSSIKPSNYIEVRRHRT-------ALWIRHSDAVSCMSLDQDCGLLYTASWDRT 177
K SI+P +++ R+ LW D+V C S T
Sbjct: 61 ------KRSIRPHPELKLFRNLNIDVCWSHVLWDYAKDSVFCSS---------------T 99
Query: 178 FKVWRISDSKCLESVSAHDDAVNSVVSSSEGLIFTGSADGTVKVWKREQHG 228
+KV + +D +C+ES++ ++F G +G ++ +K+ ++G
Sbjct: 100 YKVCKYTDLQCIESLN---------------VLFDGRDNGALEAFKKCRNG 135
>pdb|1GXR|A Chain A, Wd40 Region Of Human Groucho/tle1
pdb|1GXR|B Chain B, Wd40 Region Of Human Groucho/tle1
pdb|2CE8|A Chain A, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|B Chain B, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|C Chain C, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|D Chain D, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|A Chain A, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|B Chain B, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|C Chain C, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|D Chain D, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain
Length = 337
Score = 31.2 bits (69), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 18/90 (20%), Positives = 39/90 (43%), Gaps = 3/90 (3%)
Query: 154 SDAVSC--MSLDQDCGLLYTASWDRTFKVWRISDSKCLESVSAHDDAVNSVVSSSEGL-I 210
S A +C +++ D + ++ D VW + + + H D + + S++G +
Sbjct: 139 SSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKL 198
Query: 211 FTGSADGTVKVWKREQHGKGTKHSLAQTLL 240
+TG D TV+ W + + +H +
Sbjct: 199 WTGGLDNTVRSWDLREGRQLQQHDFTSQIF 228
Score = 29.6 bits (65), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 33/166 (19%), Positives = 57/166 (34%), Gaps = 19/166 (11%)
Query: 153 HSDAVSCMSLDQDCGLLYTASWDRTFKVWRISDSKCLESVSAHDDAVNSVVSSSEGLIFT 212
H+D SC+ + D L+T D T + W + + + L+ + + +
Sbjct: 182 HTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHDFTSQIFSLGYCPTGEWLAV 241
Query: 213 GSADGTVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSSSRSIVYCG------SSDGL 266
G V+V + K H L + C + S YCG D L
Sbjct: 242 GMESSNVEVLHVNKPDKYQLH------LHESCVL-------SLKFAYCGKWFVSTGKDNL 288
Query: 267 VNFWEREKQLSHGGVLKGHKLAVLCLAAAGKLVFSGSADKTICVWR 312
+N W S + + ++ K + +GS DK V+
Sbjct: 289 LNAWRTPYGASIFQSKESSSVLSCDISVDDKYIVTGSGDKKATVYE 334
>pdb|3VL1|A Chain A, Crystal Structure Of Yeast Rpn14
pdb|3VL1|B Chain B, Crystal Structure Of Yeast Rpn14
Length = 420
Score = 30.0 bits (66), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 14/56 (25%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
Query: 169 LYTASWDRTFKVWRISDSKCLESVSAHDDAVNSVVSSSEGL-IFTGSADGTVKVWK 223
L ++S D K+W + D ++ H V + G + + S DGT+++W+
Sbjct: 154 LISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRNVLSASLDGTIRLWE 209
>pdb|3ACP|A Chain A, Crystal Structure Of Yeast Rpn14, A Chaperone Of The 19s
Reg Particle Of The Proteasome
Length = 417
Score = 30.0 bits (66), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 14/56 (25%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
Query: 169 LYTASWDRTFKVWRISDSKCLESVSAHDDAVNSVVSSSEGL-IFTGSADGTVKVWK 223
L ++S D K+W + D ++ H V + G + + S DGT+++W+
Sbjct: 151 LISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRNVLSASLDGTIRLWE 206
>pdb|3MWP|A Chain A, Nucleoprotein Structure Of Lassa Fever Virus
pdb|3MWP|B Chain B, Nucleoprotein Structure Of Lassa Fever Virus
pdb|3MWP|C Chain C, Nucleoprotein Structure Of Lassa Fever Virus
pdb|3MWT|A Chain A, Crystal Structure Of Lassa Fever Virus Nucleoprotein In
Complex With Mn2+
pdb|3MWT|B Chain B, Crystal Structure Of Lassa Fever Virus Nucleoprotein In
Complex With Mn2+
pdb|3MWT|C Chain C, Crystal Structure Of Lassa Fever Virus Nucleoprotein In
Complex With Mn2+
pdb|3MX2|A Chain A, Lassa Fever Virus Nucleoprotein Complexed With Dttp
pdb|3MX2|B Chain B, Lassa Fever Virus Nucleoprotein Complexed With Dttp
pdb|3MX2|C Chain C, Lassa Fever Virus Nucleoprotein Complexed With Dttp
pdb|3MX5|A Chain A, Lassa Fever Virus Nucleoprotein Complexed With Utp
pdb|3MX5|B Chain B, Lassa Fever Virus Nucleoprotein Complexed With Utp
pdb|3MX5|C Chain C, Lassa Fever Virus Nucleoprotein Complexed With Utp
Length = 577
Score = 30.0 bits (66), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 40/185 (21%), Positives = 85/185 (45%), Gaps = 44/185 (23%)
Query: 100 QDGKIRVWKISPKN-QSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVS 158
+DG +RVW + KN + ++ + GT+P+L + + +++ +DAV
Sbjct: 165 RDGVVRVWDV--KNAELLNNQFGTMPSLT---LACLTKQGQVDL-----------NDAVQ 208
Query: 159 CMSLDQDCGLLYTASWDRTFKVWRISDS----------KCLESVSAHDDAVNSVVSSSEG 208
++ D GL+YTA + T + R++ S K ++S ++ ++ + V +
Sbjct: 209 ALT---DLGLIYTAKYPNTSDLDRLTQSHPILNMIDTKKSSLNISGYNFSLGAAVKAGAC 265
Query: 209 LIFTGSADGTVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSSS------RSIVY--C 260
++ G+ T+KV + G + +++LK + A+ + + +I+Y C
Sbjct: 266 MLDGGNMLETIKVSPQTMDG------ILKSILKVKKALGMFISDTPGERNPYENILYKIC 319
Query: 261 GSSDG 265
S DG
Sbjct: 320 LSGDG 324
>pdb|3PHA|A Chain A, The Crystal Structure Of The W169y Mutant Of
Alpha-Glucosidase (Gh31 Family) From Ruminococcus Obeum
Atcc 29174 In Complex With Acarbose
pdb|3PHA|B Chain B, The Crystal Structure Of The W169y Mutant Of
Alpha-Glucosidase (Gh31 Family) From Ruminococcus Obeum
Atcc 29174 In Complex With Acarbose
pdb|3PHA|C Chain C, The Crystal Structure Of The W169y Mutant Of
Alpha-Glucosidase (Gh31 Family) From Ruminococcus Obeum
Atcc 29174 In Complex With Acarbose
pdb|3PHA|D Chain D, The Crystal Structure Of The W169y Mutant Of
Alpha-Glucosidase (Gh31 Family) From Ruminococcus Obeum
Atcc 29174 In Complex With Acarbose
Length = 667
Score = 29.6 bits (65), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 34/87 (39%), Gaps = 18/87 (20%)
Query: 68 VWKNLKEFCGFKASSGLVKAIVISGEKIFTGHQDGKIRVWKISPKNQSVHKRAGTLPTLK 127
W ++ E F +S GL +A +GE F +GKI W + K +K
Sbjct: 307 FWNDMNEPAIFYSSEGLAEAKEFAGE--FAKDTEGKIHPWAMQAK-------------MK 351
Query: 128 DIFKSSIKPSNYIEVRRHRTALWIRHS 154
DI S P +Y + IRH
Sbjct: 352 DIVNS---PEDYKRFYHNVNGKKIRHD 375
>pdb|3NUK|A Chain A, The Crystal Structure Of The W169y Mutant Of
Alpha-Glucosidase (Family 31) From Ruminococcus Obeum
Atcc 29174
pdb|3NUK|B Chain B, The Crystal Structure Of The W169y Mutant Of
Alpha-Glucosidase (Family 31) From Ruminococcus Obeum
Atcc 29174
Length = 666
Score = 29.6 bits (65), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 34/87 (39%), Gaps = 18/87 (20%)
Query: 68 VWKNLKEFCGFKASSGLVKAIVISGEKIFTGHQDGKIRVWKISPKNQSVHKRAGTLPTLK 127
W ++ E F +S GL +A +GE F +GKI W + K +K
Sbjct: 307 FWNDMNEPAIFYSSEGLAEAKEFAGE--FAKDTEGKIHPWAMQAK-------------MK 351
Query: 128 DIFKSSIKPSNYIEVRRHRTALWIRHS 154
DI S P +Y + IRH
Sbjct: 352 DIVNS---PEDYKRFYHNVNGKKIRHD 375
>pdb|3NSX|A Chain A, The Crystal Structure Of The The Crystal Structure Of The
D420a Mutant Of The Alpha-Glucosidase (Family 31) From
Ruminococcus Obeum Atcc 29174
pdb|3NSX|B Chain B, The Crystal Structure Of The The Crystal Structure Of The
D420a Mutant Of The Alpha-Glucosidase (Family 31) From
Ruminococcus Obeum Atcc 29174
Length = 666
Score = 29.6 bits (65), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 34/87 (39%), Gaps = 18/87 (20%)
Query: 68 VWKNLKEFCGFKASSGLVKAIVISGEKIFTGHQDGKIRVWKISPKNQSVHKRAGTLPTLK 127
W ++ E F +S GL +A +GE F +GKI W + K +K
Sbjct: 307 FWNDMNEPAIFYSSEGLAEAKEFAGE--FAKDTEGKIHPWAMQAK-------------MK 351
Query: 128 DIFKSSIKPSNYIEVRRHRTALWIRHS 154
DI S P +Y + IRH
Sbjct: 352 DIVNS---PEDYKRFYHNVNGKKIRHD 375
>pdb|3M46|A Chain A, The Crystal Structure Of The D73a Mutant Of Glycoside
Hydrolase (Family 31) From Ruminococcus Obeum Atcc 29174
pdb|3M46|B Chain B, The Crystal Structure Of The D73a Mutant Of Glycoside
Hydrolase (Family 31) From Ruminococcus Obeum Atcc 29174
Length = 666
Score = 29.6 bits (65), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 34/87 (39%), Gaps = 18/87 (20%)
Query: 68 VWKNLKEFCGFKASSGLVKAIVISGEKIFTGHQDGKIRVWKISPKNQSVHKRAGTLPTLK 127
W ++ E F +S GL +A +GE F +GKI W + K +K
Sbjct: 307 FWNDMNEPAIFYSSEGLAEAKEFAGE--FAKDTEGKIHPWAMQAK-------------MK 351
Query: 128 DIFKSSIKPSNYIEVRRHRTALWIRHS 154
DI S P +Y + IRH
Sbjct: 352 DIVNS---PEDYKRFYHNVNGKKIRHD 375
>pdb|3GFC|A Chain A, Crystal Structure Of Histone-Binding Protein Rbbp4
pdb|2XU7|A Chain A, Structural Basis For Rbap48 Binding To Fog-1
pdb|2XU7|B Chain B, Structural Basis For Rbap48 Binding To Fog-1
Length = 425
Score = 29.6 bits (65), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 27/53 (50%), Gaps = 5/53 (9%)
Query: 175 DRTFKVWRI---SDSKCLESVSAHDDAVN--SVVSSSEGLIFTGSADGTVKVW 222
D+ +W + SK SV AH VN S SE ++ TGSAD TV +W
Sbjct: 249 DQKLMIWDTRSNNTSKPSHSVDAHTAEVNCLSFNPYSEFILATGSADKTVALW 301
>pdb|3I2N|A Chain A, Crystal Structure Of Wd40 Repeats Protein Wdr92
Length = 357
Score = 29.3 bits (64), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 26/114 (22%), Positives = 45/114 (39%), Gaps = 11/114 (9%)
Query: 169 LYTASWDRTFKVWRISDSKC-LESVSAHDDAVNSVVSSSEGL-------IFTGSADGTVK 220
L T + +W + + + SV H + +N++ I TGS DGTVK
Sbjct: 83 LATGDFGGNLHIWNLEAPEMPVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVK 142
Query: 221 VW-KREQHGKGTKHSLAQTLLKQECAVTAL--VVSSSRSIVYCGSSDGLVNFWE 271
VW R++ Q K++C A + +V G +G + ++
Sbjct: 143 VWDPRQKDDPVANMEPVQGENKRDCWTVAFGNAYNQEERVVCAGYDNGDIKLFD 196
>pdb|2XYI|A Chain A, Crystal Structure Of Nurf55 In Complex With A H4 Peptide
Length = 430
Score = 29.3 bits (64), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 27/53 (50%), Gaps = 5/53 (9%)
Query: 175 DRTFKVWRISD---SKCLESVSAHDDAVN--SVVSSSEGLIFTGSADGTVKVW 222
D+ +W + SK +V AH VN S SE ++ TGSAD TV +W
Sbjct: 253 DQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALW 305
>pdb|3C99|A Chain A, Structural Basis Of Histone H4 Recognition By P55
pdb|3C9C|A Chain A, Structural Basis Of Histone H4 Recognition By P55
Length = 432
Score = 29.3 bits (64), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 27/53 (50%), Gaps = 5/53 (9%)
Query: 175 DRTFKVWRISD---SKCLESVSAHDDAVN--SVVSSSEGLIFTGSADGTVKVW 222
D+ +W + SK +V AH VN S SE ++ TGSAD TV +W
Sbjct: 255 DQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALW 307
>pdb|2YBA|A Chain A, Crystal Structure Of Nurf55 In Complex With Histone H3
pdb|2YBA|B Chain B, Crystal Structure Of Nurf55 In Complex With Histone H3
pdb|2YB8|B Chain B, Crystal Structure Of Nurf55 In Complex With Su(Z)12
Length = 422
Score = 29.3 bits (64), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 27/53 (50%), Gaps = 5/53 (9%)
Query: 175 DRTFKVWRISD---SKCLESVSAHDDAVN--SVVSSSEGLIFTGSADGTVKVW 222
D+ +W + SK +V AH VN S SE ++ TGSAD TV +W
Sbjct: 257 DQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALW 309
>pdb|3T5Q|A Chain A, 3a Structure Of Lassa Virus Nucleoprotein In Complex With
Ssrna
pdb|3T5Q|B Chain B, 3a Structure Of Lassa Virus Nucleoprotein In Complex With
Ssrna
pdb|3T5Q|E Chain E, 3a Structure Of Lassa Virus Nucleoprotein In Complex With
Ssrna
pdb|3T5Q|G Chain G, 3a Structure Of Lassa Virus Nucleoprotein In Complex With
Ssrna
pdb|3T5Q|I Chain I, 3a Structure Of Lassa Virus Nucleoprotein In Complex With
Ssrna
pdb|3T5Q|K Chain K, 3a Structure Of Lassa Virus Nucleoprotein In Complex With
Ssrna
Length = 353
Score = 28.9 bits (63), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 31/140 (22%), Positives = 65/140 (46%), Gaps = 30/140 (21%)
Query: 100 QDGKIRVWKISPKN-QSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVS 158
+DG +RVW + KN + + + GT+P+L + + +++ +DAV
Sbjct: 170 RDGVVRVWDV--KNAELLSNQFGTMPSLT---LACLTKQGQVDL-----------NDAVQ 213
Query: 159 CMSLDQDCGLLYTASWDRTFKVWRISDS----------KCLESVSAHDDAVNSVVSSSEG 208
++ D GL+YTA + T + R++ S K ++S ++ ++ + V +
Sbjct: 214 ALT---DLGLIYTAKYPNTSDLDRLTQSHPILNMIDTKKSSLNISGYNFSLGAAVKAGAC 270
Query: 209 LIFTGSADGTVKVWKREQHG 228
++ G+ T+KV + G
Sbjct: 271 MLDGGNMLETIKVSPQTMDG 290
>pdb|3T5N|A Chain A, 1.8a Crystal Structure Of Lassa Virus Nucleoprotein In
Complex With Ssrna
Length = 354
Score = 28.9 bits (63), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 31/140 (22%), Positives = 65/140 (46%), Gaps = 30/140 (21%)
Query: 100 QDGKIRVWKISPKN-QSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVS 158
+DG +RVW + KN + + + GT+P+L + + +++ +DAV
Sbjct: 171 RDGVVRVWDV--KNAELLSNQFGTMPSLT---LACLTKQGQVDL-----------NDAVQ 214
Query: 159 CMSLDQDCGLLYTASWDRTFKVWRISDS----------KCLESVSAHDDAVNSVVSSSEG 208
++ D GL+YTA + T + R++ S K ++S ++ ++ + V +
Sbjct: 215 ALT---DLGLIYTAKYPNTSDLDRLTQSHPILNMIDTKKSSLNISGYNFSLGAAVKAGAC 271
Query: 209 LIFTGSADGTVKVWKREQHG 228
++ G+ T+KV + G
Sbjct: 272 MLDGGNMLETIKVSPQTMDG 291
>pdb|3R3L|A Chain A, Structure Of Np Protein From Lassa Av Strain
pdb|3R3L|B Chain B, Structure Of Np Protein From Lassa Av Strain
pdb|3R3L|C Chain C, Structure Of Np Protein From Lassa Av Strain
Length = 582
Score = 28.9 bits (63), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 40/185 (21%), Positives = 84/185 (45%), Gaps = 44/185 (23%)
Query: 100 QDGKIRVWKISPKN-QSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVS 158
+DG +RVW + KN + ++ + GT+P+L + + +++ +D V
Sbjct: 157 RDGVVRVWDV--KNAELLNNQFGTMPSLT---LACLTKQGQVDL-----------NDVVQ 200
Query: 159 CMSLDQDCGLLYTASWDRTFKVWRISDS----------KCLESVSAHDDAVNSVVSSSEG 208
++ D GL+YTA + T + R++ S K ++S ++ ++ + V +
Sbjct: 201 ALT---DLGLIYTAKYPNTSDLDRLTQSHPILNMIDTKKSSLNISGYNFSLGAAVKAGAC 257
Query: 209 LIFTGSADGTVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSSS------RSIVY--C 260
++ G+ T+KV + G + +++LK + A+ V + +I+Y C
Sbjct: 258 MLDGGNMLETIKVSPQSMDG------ILKSILKVKRALGMFVSDTPGERNPYENILYKIC 311
Query: 261 GSSDG 265
S DG
Sbjct: 312 LSGDG 316
>pdb|4GGA|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site
Degron Recognition By ApcC
Length = 420
Score = 28.9 bits (63), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 21/98 (21%), Positives = 38/98 (38%), Gaps = 8/98 (8%)
Query: 175 DRTFKVWRISDSKCLESVSAHDDAVNSVVSSSEGLIFTGS--ADGTVKVWKREQHGKGTK 232
DR ++W + CL +V AH + + S + +G A + +WK K +
Sbjct: 300 DRHIRIWNVCSGACLSAVDAHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAE 359
Query: 233 HSLAQTLLKQECAVTALVVSSSRSIVYCGSSDGLVNFW 270
L V +L +S + V ++D + W
Sbjct: 360 ------LKGHTSRVLSLTMSPDGATVASAAADETLRLW 391
>pdb|4GGC|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site
Degron Recognition By ApcC
Length = 318
Score = 28.5 bits (62), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 21/99 (21%), Positives = 38/99 (38%), Gaps = 8/99 (8%)
Query: 175 DRTFKVWRISDSKCLESVSAHDDAVNSVVSSSEGLIFTGS--ADGTVKVWKREQHGKGTK 232
DR ++W + CL +V AH + + S + +G A + +WK K +
Sbjct: 220 DRHIRIWNVCSGACLSAVDAHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAE 279
Query: 233 HSLAQTLLKQECAVTALVVSSSRSIVYCGSSDGLVNFWE 271
L V +L +S + V ++D + W
Sbjct: 280 ------LKGHTSRVLSLTMSPDGATVASAAADETLRLWR 312
>pdb|4GGD|A Chain A, Structural Analysis Of Human Cdc20 Supports Multisite
Degron Recognition By ApcC.
pdb|4GGD|B Chain B, Structural Analysis Of Human Cdc20 Supports Multisite
Degron Recognition By ApcC
Length = 431
Score = 28.5 bits (62), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 21/98 (21%), Positives = 38/98 (38%), Gaps = 8/98 (8%)
Query: 175 DRTFKVWRISDSKCLESVSAHDDAVNSVVSSSEGLIFTGS--ADGTVKVWKREQHGKGTK 232
DR ++W + CL +V AH + + S + +G A + +WK K +
Sbjct: 311 DRHIRIWNVCSGACLSAVDAHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAE 370
Query: 233 HSLAQTLLKQECAVTALVVSSSRSIVYCGSSDGLVNFW 270
L V +L +S + V ++D + W
Sbjct: 371 ------LKGHTSRVLSLTMSPDGATVASAAADETLRLW 402
>pdb|3ZWL|B Chain B, Structure Of Eukaryotic Translation Initiation Factor
Eif3i Complex With Eif3b C-Terminus (655-700)
pdb|3ZWL|D Chain D, Structure Of Eukaryotic Translation Initiation Factor
Eif3i Complex With Eif3b C-Terminus (655-700)
Length = 369
Score = 28.5 bits (62), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 18/71 (25%), Positives = 36/71 (50%), Gaps = 1/71 (1%)
Query: 153 HSDAVSCMSLDQDCGLLYTASWDRTFKVWRISDSKCLESVSAHDDAVNSV-VSSSEGLIF 211
H ++ + +++ LL++ S D + VW + + L ++ H + S+ V
Sbjct: 31 HERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLGTLDGHTGTIWSIDVDCFTKYCV 90
Query: 212 TGSADGTVKVW 222
TGSAD ++K+W
Sbjct: 91 TGSADYSIKLW 101
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.132 0.409
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,422,076
Number of Sequences: 62578
Number of extensions: 453289
Number of successful extensions: 1691
Number of sequences better than 100.0: 105
Number of HSP's better than 100.0 without gapping: 71
Number of HSP's successfully gapped in prelim test: 34
Number of HSP's that attempted gapping in prelim test: 1063
Number of HSP's gapped (non-prelim): 312
length of query: 368
length of database: 14,973,337
effective HSP length: 100
effective length of query: 268
effective length of database: 8,715,537
effective search space: 2335763916
effective search space used: 2335763916
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.6 bits)