Query 047325
Match_columns 368
No_of_seqs 740 out of 1676
Neff 11.9
Searched_HMMs 46136
Date Fri Mar 29 10:01:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047325.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/047325hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0271 Notchless-like WD40 re 100.0 7.1E-53 1.5E-57 326.2 28.0 289 34-368 105-479 (480)
2 KOG0272 U4/U6 small nuclear ri 100.0 3E-50 6.6E-55 315.2 20.6 284 32-368 163-458 (459)
3 KOG0286 G-protein beta subunit 100.0 3.2E-45 6.9E-50 274.1 30.3 285 36-367 47-342 (343)
4 KOG0279 G protein beta subunit 100.0 1.7E-43 3.6E-48 263.3 28.8 277 35-367 6-310 (315)
5 KOG0272 U4/U6 small nuclear ri 100.0 1.6E-44 3.4E-49 283.2 19.6 245 29-312 202-458 (459)
6 KOG0295 WD40 repeat-containing 100.0 1.1E-42 2.4E-47 268.0 25.3 287 29-367 93-403 (406)
7 KOG0315 G-protein beta subunit 100.0 1.2E-41 2.6E-46 249.4 27.4 262 56-367 12-285 (311)
8 KOG0645 WD40 repeat protein [G 100.0 4.9E-41 1.1E-45 249.1 30.1 283 35-367 5-308 (312)
9 KOG0285 Pleiotropic regulator 100.0 1.8E-41 3.9E-46 260.9 25.6 284 32-367 139-436 (460)
10 KOG0282 mRNA splicing factor [ 100.0 4.2E-43 9.1E-48 279.8 16.9 285 33-368 203-503 (503)
11 KOG0284 Polyadenylation factor 100.0 2.6E-42 5.6E-47 269.7 20.1 273 43-367 95-377 (464)
12 KOG0271 Notchless-like WD40 re 100.0 8E-42 1.7E-46 265.0 20.3 240 75-367 108-394 (480)
13 KOG0265 U5 snRNP-specific prot 100.0 6.3E-41 1.4E-45 252.0 24.3 280 34-366 37-334 (338)
14 KOG0273 Beta-transducin family 100.0 2.8E-40 6E-45 262.9 28.2 274 40-367 174-479 (524)
15 KOG0315 G-protein beta subunit 100.0 9.1E-40 2E-44 239.6 28.3 271 31-337 27-309 (311)
16 KOG0281 Beta-TrCP (transducin 100.0 7.3E-42 1.6E-46 262.4 15.6 268 44-356 197-477 (499)
17 KOG0318 WD40 repeat stress pro 100.0 4.2E-38 9.2E-43 253.8 34.5 319 31-368 177-600 (603)
18 KOG0279 G protein beta subunit 100.0 6.1E-39 1.3E-43 239.0 24.7 253 23-314 42-313 (315)
19 KOG0263 Transcription initiati 100.0 6.4E-40 1.4E-44 276.6 21.2 266 80-367 376-646 (707)
20 KOG0293 WD40 repeat-containing 100.0 2.4E-39 5.2E-44 253.7 22.4 281 34-367 214-510 (519)
21 KOG0263 Transcription initiati 100.0 8.3E-39 1.8E-43 269.9 25.7 267 36-341 370-698 (707)
22 KOG0318 WD40 repeat stress pro 100.0 2.7E-37 5.8E-42 249.2 32.2 342 26-367 41-557 (603)
23 KOG0296 Angio-associated migra 100.0 6.6E-38 1.4E-42 241.8 26.5 286 34-367 54-395 (399)
24 KOG0316 Conserved WD40 repeat- 100.0 6.5E-38 1.4E-42 228.1 24.7 267 37-347 10-289 (307)
25 KOG0273 Beta-transducin family 100.0 5.9E-38 1.3E-42 249.7 26.6 267 45-366 236-519 (524)
26 cd00200 WD40 WD40 domain, foun 100.0 5E-37 1.1E-41 253.4 33.6 279 37-368 2-289 (289)
27 KOG0266 WD40 repeat-containing 100.0 2.1E-37 4.6E-42 267.2 31.0 283 35-367 149-451 (456)
28 KOG0319 WD40-repeat-containing 100.0 2.7E-38 5.8E-43 264.6 24.0 291 29-368 308-617 (775)
29 KOG0313 Microtubule binding pr 100.0 7.3E-38 1.6E-42 242.7 24.1 277 42-367 103-415 (423)
30 KOG0643 Translation initiation 100.0 9.8E-38 2.1E-42 231.3 23.4 279 40-368 6-315 (327)
31 KOG0319 WD40-repeat-containing 100.0 1.5E-37 3.3E-42 260.1 26.9 325 28-367 131-574 (775)
32 KOG0291 WD40-repeat-containing 100.0 2.6E-36 5.7E-41 253.4 33.9 318 30-367 131-505 (893)
33 KOG0286 G-protein beta subunit 100.0 4.2E-37 9E-42 230.7 25.8 242 75-367 48-300 (343)
34 PLN00181 protein SPA1-RELATED; 100.0 2E-36 4.3E-41 280.1 35.1 278 39-368 478-791 (793)
35 KOG0281 Beta-TrCP (transducin 100.0 1.4E-38 3E-43 244.5 16.8 245 32-316 225-479 (499)
36 KOG0278 Serine/threonine kinas 100.0 5.2E-38 1.1E-42 230.7 14.3 275 39-368 9-295 (334)
37 KOG0268 Sof1-like rRNA process 100.0 1.9E-37 4.2E-42 239.1 14.7 284 29-368 51-343 (433)
38 KOG0291 WD40-repeat-containing 100.0 6.9E-35 1.5E-39 244.9 30.2 281 28-346 291-600 (893)
39 KOG0276 Vesicle coat complex C 100.0 3E-36 6.6E-41 248.1 21.3 240 77-368 8-255 (794)
40 KOG0284 Polyadenylation factor 100.0 1.3E-36 2.7E-41 238.0 17.2 238 39-314 133-380 (464)
41 KOG0295 WD40 repeat-containing 100.0 7.6E-36 1.6E-40 230.4 21.0 245 29-312 135-404 (406)
42 KOG0276 Vesicle coat complex C 100.0 1.7E-35 3.7E-40 243.7 23.3 271 36-347 5-288 (794)
43 KOG1446 Histone H3 (Lys4) meth 100.0 2.2E-33 4.8E-38 213.3 31.3 280 38-355 8-302 (311)
44 KOG0275 Conserved WD40 repeat- 100.0 1E-35 2.2E-40 227.0 16.4 277 40-368 209-507 (508)
45 KOG0285 Pleiotropic regulator 100.0 2.4E-35 5.1E-40 227.4 18.4 230 76-347 145-379 (460)
46 KOG0277 Peroxisomal targeting 100.0 6E-35 1.3E-39 215.0 19.5 233 43-312 59-307 (311)
47 KOG0289 mRNA splicing factor [ 100.0 9.4E-34 2E-38 223.7 26.9 273 45-367 220-503 (506)
48 KOG0274 Cdc4 and related F-box 100.0 3.7E-34 8.1E-39 246.2 26.8 273 43-359 207-485 (537)
49 KOG0316 Conserved WD40 repeat- 100.0 1.3E-34 2.7E-39 211.1 19.9 241 74-367 9-254 (307)
50 KOG0306 WD40-repeat-containing 100.0 1.4E-33 3.1E-38 237.0 29.0 312 33-367 96-577 (888)
51 KOG0292 Vesicle coat complex C 100.0 4.5E-34 9.8E-39 244.1 25.0 276 40-349 5-313 (1202)
52 KOG1407 WD40 repeat protein [F 100.0 2.7E-33 5.9E-38 207.1 25.6 265 38-346 14-290 (313)
53 KOG0645 WD40 repeat protein [G 100.0 3.2E-33 6.9E-38 207.8 25.8 243 74-367 6-258 (312)
54 KOG0277 Peroxisomal targeting 100.0 5.7E-34 1.2E-38 209.9 21.3 257 63-368 37-307 (311)
55 KOG0313 Microtubule binding pr 100.0 1.3E-33 2.8E-38 219.3 24.3 270 32-313 132-417 (423)
56 KOG0300 WD40 repeat-containing 100.0 7E-34 1.5E-38 216.3 20.7 320 32-367 136-473 (481)
57 KOG0306 WD40-repeat-containing 100.0 3.9E-33 8.4E-38 234.4 26.2 276 38-367 367-661 (888)
58 KOG0283 WD40 repeat-containing 100.0 1.3E-33 2.9E-38 240.5 23.8 249 31-314 253-576 (712)
59 KOG0265 U5 snRNP-specific prot 100.0 3.5E-33 7.5E-38 210.5 21.6 240 71-349 36-287 (338)
60 KOG0288 WD40 repeat protein Ti 100.0 2.9E-34 6.3E-39 225.1 16.0 289 27-368 158-459 (459)
61 PLN00181 protein SPA1-RELATED; 100.0 2.5E-32 5.4E-37 252.9 31.1 261 63-367 457-735 (793)
62 KOG0301 Phospholipase A2-activ 100.0 1.2E-32 2.6E-37 229.4 25.9 274 31-367 1-285 (745)
63 KOG0266 WD40 repeat-containing 100.0 1.6E-32 3.4E-37 237.0 26.7 239 80-368 157-407 (456)
64 KOG0310 Conserved WD40 repeat- 100.0 5.5E-32 1.2E-36 216.8 27.2 258 43-344 25-295 (487)
65 KOG0278 Serine/threonine kinas 100.0 1.3E-33 2.8E-38 207.7 15.6 251 27-316 42-299 (334)
66 KOG0973 Histone transcription 100.0 3E-32 6.6E-37 238.1 26.2 296 44-368 13-353 (942)
67 KOG0772 Uncharacterized conser 100.0 1.1E-32 2.4E-37 222.3 21.3 292 38-366 161-483 (641)
68 KOG0274 Cdc4 and related F-box 100.0 3.2E-32 6.9E-37 234.3 25.4 253 29-324 233-490 (537)
69 PTZ00421 coronin; Provisional 100.0 4.8E-31 1E-35 226.8 32.5 272 51-355 29-330 (493)
70 PTZ00420 coronin; Provisional 100.0 1.2E-30 2.6E-35 225.4 33.9 251 59-341 49-319 (568)
71 KOG0647 mRNA export protein (c 100.0 2E-31 4.3E-36 201.3 24.7 263 44-347 27-312 (347)
72 KOG0296 Angio-associated migra 100.0 1.3E-31 2.7E-36 207.3 24.0 248 26-314 88-398 (399)
73 KOG0294 WD40 repeat-containing 100.0 1.7E-31 3.7E-36 202.8 24.2 255 57-367 4-278 (362)
74 KOG0282 mRNA splicing factor [ 100.0 5.2E-33 1.1E-37 222.3 16.6 242 73-352 205-456 (503)
75 KOG0640 mRNA cleavage stimulat 100.0 8.2E-32 1.8E-36 204.3 22.0 282 37-367 105-423 (430)
76 KOG0283 WD40 repeat-containing 100.0 4.9E-32 1.1E-36 230.9 22.7 268 77-368 261-574 (712)
77 KOG2096 WD40 repeat protein [G 100.0 2.3E-30 5E-35 197.1 27.3 303 21-347 63-392 (420)
78 KOG0305 Anaphase promoting com 100.0 6.4E-31 1.4E-35 218.3 25.2 259 56-368 190-459 (484)
79 cd00200 WD40 WD40 domain, foun 100.0 2.3E-30 4.9E-35 213.6 28.7 239 76-355 3-248 (289)
80 KOG0292 Vesicle coat complex C 100.0 1.1E-31 2.4E-36 229.6 20.2 241 77-367 4-277 (1202)
81 KOG0294 WD40 repeat-containing 100.0 1.5E-30 3.3E-35 197.6 24.1 259 35-337 34-306 (362)
82 PTZ00421 coronin; Provisional 100.0 7.4E-30 1.6E-34 219.5 30.2 203 39-278 70-295 (493)
83 KOG0264 Nucleosome remodeling 100.0 8.6E-31 1.9E-35 208.3 21.3 246 39-314 119-404 (422)
84 KOG1036 Mitotic spindle checkp 100.0 9.5E-30 2.1E-34 192.8 25.8 264 44-348 13-294 (323)
85 KOG0305 Anaphase promoting com 100.0 3.3E-30 7.2E-35 214.0 24.8 237 41-316 214-463 (484)
86 KOG4283 Transcription-coupled 100.0 1.5E-29 3.1E-34 190.8 24.3 283 38-367 37-362 (397)
87 KOG0264 Nucleosome remodeling 100.0 5.1E-30 1.1E-34 203.9 22.2 251 80-367 122-401 (422)
88 KOG0299 U3 snoRNP-associated p 100.0 2.3E-29 5E-34 200.4 25.8 281 37-358 135-459 (479)
89 KOG1332 Vesicle coat complex C 100.0 2.7E-30 6E-35 189.5 17.8 241 40-314 7-286 (299)
90 KOG0308 Conserved WD40 repeat- 100.0 1.9E-30 4.1E-35 215.0 18.1 248 54-340 37-309 (735)
91 PTZ00420 coronin; Provisional 100.0 1.1E-28 2.5E-33 213.2 28.4 198 149-367 69-290 (568)
92 KOG1407 WD40 repeat protein [F 100.0 3.6E-29 7.7E-34 185.4 21.6 234 76-350 14-253 (313)
93 KOG0289 mRNA splicing factor [ 100.0 3.2E-29 6.9E-34 198.2 22.6 252 26-313 243-505 (506)
94 KOG0293 WD40 repeat-containing 100.0 1E-29 2.2E-34 199.9 19.3 247 73-368 215-468 (519)
95 KOG1408 WD40 repeat protein [F 100.0 1.1E-29 2.3E-34 213.1 20.2 287 49-343 329-698 (1080)
96 KOG0641 WD40 repeat protein [G 100.0 1.3E-27 2.8E-32 173.8 28.4 281 41-367 29-346 (350)
97 KOG0308 Conserved WD40 repeat- 100.0 4E-30 8.7E-35 213.0 17.4 233 92-365 37-280 (735)
98 KOG0310 Conserved WD40 repeat- 100.0 4.1E-29 9E-34 200.4 22.4 238 37-313 61-308 (487)
99 KOG0299 U3 snoRNP-associated p 100.0 4.6E-29 1E-33 198.7 21.0 257 75-367 135-407 (479)
100 KOG0643 Translation initiation 100.0 6.4E-28 1.4E-32 179.4 25.4 237 77-349 5-252 (327)
101 KOG0269 WD40 repeat-containing 100.0 2.8E-29 6.1E-34 212.0 20.2 273 46-365 41-335 (839)
102 KOG1332 Vesicle coat complex C 100.0 2.6E-29 5.6E-34 184.4 16.6 242 79-352 8-280 (299)
103 KOG0639 Transducin-like enhanc 100.0 1.3E-28 2.9E-33 198.5 20.9 271 38-363 413-697 (705)
104 KOG0647 mRNA export protein (c 100.0 1E-27 2.2E-32 181.3 23.4 242 74-367 19-278 (347)
105 KOG0275 Conserved WD40 repeat- 100.0 4.3E-29 9.4E-34 190.9 15.8 251 81-364 212-475 (508)
106 KOG0772 Uncharacterized conser 100.0 1.6E-28 3.6E-33 198.4 18.8 245 75-347 160-428 (641)
107 KOG2445 Nuclear pore complex c 100.0 5.8E-27 1.2E-31 177.8 25.2 249 79-368 10-316 (361)
108 KOG0288 WD40 repeat protein Ti 100.0 1.5E-28 3.3E-33 193.2 16.4 240 34-311 209-458 (459)
109 KOG0268 Sof1-like rRNA process 100.0 1.7E-28 3.7E-33 189.9 15.5 247 27-314 92-345 (433)
110 KOG0646 WD40 repeat protein [G 100.0 2.1E-27 4.6E-32 189.6 21.9 265 59-367 12-304 (476)
111 KOG2445 Nuclear pore complex c 100.0 5.7E-27 1.2E-31 177.8 22.9 259 41-325 10-330 (361)
112 KOG0269 WD40 repeat-containing 100.0 1.9E-28 4E-33 207.1 16.0 225 54-315 100-341 (839)
113 KOG0321 WD40 repeat-containing 100.0 1.4E-27 3E-32 197.7 20.3 270 56-367 66-388 (720)
114 KOG1274 WD40 repeat protein [G 100.0 1.7E-26 3.8E-31 198.8 27.3 265 41-343 10-285 (933)
115 KOG1539 WD repeat protein [Gen 100.0 7.7E-27 1.7E-31 198.9 24.7 302 27-359 185-609 (910)
116 KOG0300 WD40 repeat-containing 100.0 1.8E-27 3.8E-32 181.6 18.5 247 56-346 126-416 (481)
117 KOG4328 WD40 protein [Function 100.0 2.3E-26 5.1E-31 183.3 25.2 293 29-355 171-492 (498)
118 KOG1446 Histone H3 (Lys4) meth 100.0 4.7E-26 1E-30 173.7 25.8 238 77-368 9-260 (311)
119 KOG0301 Phospholipase A2-activ 100.0 2.1E-27 4.5E-32 198.5 19.6 237 75-368 7-247 (745)
120 KOG0650 WD40 repeat nucleolar 100.0 1.9E-26 4.1E-31 189.8 24.2 306 38-367 394-732 (733)
121 KOG2106 Uncharacterized conser 100.0 2.1E-25 4.6E-30 180.1 29.6 300 45-367 247-623 (626)
122 KOG0646 WD40 repeat protein [G 100.0 1.3E-26 2.8E-31 185.2 22.4 278 22-340 16-331 (476)
123 KOG1063 RNA polymerase II elon 100.0 1.3E-26 2.7E-31 193.8 22.8 297 33-367 180-645 (764)
124 KOG0640 mRNA cleavage stimulat 100.0 2.9E-27 6.4E-32 179.7 16.8 247 32-313 160-425 (430)
125 KOG0641 WD40 repeat protein [G 100.0 6.2E-25 1.4E-29 160.0 26.7 244 32-314 77-349 (350)
126 KOG2055 WD40 repeat protein [G 100.0 7.7E-26 1.7E-30 180.6 23.0 274 44-367 213-509 (514)
127 KOG0267 Microtubule severing p 100.0 4.4E-28 9.5E-33 203.4 10.1 247 57-348 7-258 (825)
128 KOG2106 Uncharacterized conser 99.9 8.6E-25 1.9E-29 176.6 28.3 313 38-362 98-480 (626)
129 KOG0973 Histone transcription 99.9 8.3E-26 1.8E-30 198.2 23.4 245 33-315 58-356 (942)
130 KOG1036 Mitotic spindle checkp 99.9 5.8E-25 1.3E-29 167.0 23.7 231 81-367 12-259 (323)
131 KOG0270 WD40 repeat-containing 99.9 3.5E-26 7.6E-31 181.6 17.7 233 92-342 192-432 (463)
132 KOG1539 WD repeat protein [Gen 99.9 1.4E-24 3.1E-29 185.3 27.7 311 28-349 228-638 (910)
133 KOG2048 WD40 repeat protein [G 99.9 3.4E-24 7.4E-29 178.9 28.7 275 42-364 23-313 (691)
134 KOG0302 Ribosome Assembly prot 99.9 3.5E-25 7.5E-30 172.6 21.2 207 34-273 141-378 (440)
135 KOG4378 Nuclear protein COP1 [ 99.9 2.8E-25 6E-30 179.2 20.9 254 47-340 37-305 (673)
136 KOG0270 WD40 repeat-containing 99.9 2.6E-25 5.7E-30 176.7 19.3 224 54-316 192-451 (463)
137 KOG0639 Transducin-like enhanc 99.9 5.6E-25 1.2E-29 177.8 16.9 228 79-343 416-648 (705)
138 KOG0321 WD40 repeat-containing 99.9 1.5E-24 3.3E-29 179.9 19.8 295 37-340 93-429 (720)
139 TIGR03866 PQQ_ABC_repeats PQQ- 99.9 8.9E-23 1.9E-27 169.7 30.3 259 55-358 2-281 (300)
140 KOG0267 Microtubule severing p 99.9 3.7E-26 7.9E-31 192.0 9.5 229 39-306 23-260 (825)
141 KOG1063 RNA polymerase II elon 99.9 3.5E-24 7.6E-29 179.3 21.1 328 36-367 353-760 (764)
142 KOG1273 WD40 repeat protein [G 99.9 1.6E-23 3.5E-28 159.8 22.3 269 47-356 26-322 (405)
143 KOG4283 Transcription-coupled 99.9 7.7E-24 1.7E-28 160.1 20.1 214 79-316 40-278 (397)
144 KOG4227 WD40 repeat protein [G 99.9 1.1E-23 2.3E-28 165.5 21.5 289 36-367 48-384 (609)
145 KOG2048 WD40 repeat protein [G 99.9 2.5E-23 5.4E-28 173.9 24.0 234 81-351 24-268 (691)
146 KOG1188 WD40 repeat protein [G 99.9 9.6E-24 2.1E-28 162.6 18.9 268 55-367 41-343 (376)
147 KOG1274 WD40 repeat protein [G 99.9 5.7E-23 1.2E-27 177.4 24.8 238 79-367 10-259 (933)
148 KOG2919 Guanine nucleotide-bin 99.9 4.4E-23 9.5E-28 157.9 20.5 263 49-349 54-361 (406)
149 KOG0322 G-protein beta subunit 99.9 4.3E-24 9.3E-29 158.9 14.5 285 34-367 4-320 (323)
150 TIGR03866 PQQ_ABC_repeats PQQ- 99.9 1.5E-21 3.2E-26 162.4 31.3 268 32-338 19-300 (300)
151 KOG0302 Ribosome Assembly prot 99.9 1E-23 2.2E-28 164.5 16.8 208 32-270 199-435 (440)
152 KOG1034 Transcriptional repres 99.9 3.8E-23 8.3E-28 158.5 19.0 279 40-353 34-378 (385)
153 KOG0307 Vesicle coat complex C 99.9 1.2E-23 2.5E-28 185.9 16.1 237 45-317 65-330 (1049)
154 KOG1009 Chromatin assembly com 99.9 1.5E-22 3.2E-27 159.5 20.5 286 44-348 13-362 (434)
155 KOG1273 WD40 repeat protein [G 99.9 2.1E-22 4.5E-27 153.8 20.0 244 85-368 26-289 (405)
156 KOG2096 WD40 repeat protein [G 99.9 5.3E-23 1.1E-27 157.3 16.7 209 146-367 78-305 (420)
157 KOG2055 WD40 repeat protein [G 99.9 1.2E-22 2.6E-27 162.5 18.5 229 82-347 213-454 (514)
158 KOG4378 Nuclear protein COP1 [ 99.9 1.2E-22 2.5E-27 164.2 18.1 204 55-296 92-303 (673)
159 KOG0650 WD40 repeat nucleolar 99.9 1.8E-22 3.9E-27 166.6 18.2 238 77-368 395-678 (733)
160 KOG1007 WD repeat protein TSSC 99.9 3E-21 6.5E-26 145.8 22.8 264 63-366 39-357 (370)
161 KOG0649 WD40 repeat protein [G 99.9 1.1E-20 2.4E-25 139.3 24.7 274 50-352 18-310 (325)
162 KOG1408 WD40 repeat protein [F 99.9 5.1E-22 1.1E-26 167.4 19.4 238 42-314 457-713 (1080)
163 KOG1538 Uncharacterized conser 99.9 6.5E-22 1.4E-26 165.7 18.8 264 46-366 14-289 (1081)
164 KOG0307 Vesicle coat complex C 99.9 1.2E-22 2.6E-27 179.5 13.9 247 82-362 64-333 (1049)
165 KOG1334 WD40 repeat protein [G 99.9 1.8E-22 4E-27 162.6 12.7 293 32-367 130-463 (559)
166 KOG1034 Transcriptional repres 99.9 5.2E-22 1.1E-26 152.4 13.7 241 43-313 88-382 (385)
167 KOG0303 Actin-binding protein 99.9 3.7E-21 8.1E-26 151.2 18.2 201 39-276 76-297 (472)
168 KOG0642 Cell-cycle nuclear pro 99.9 7.7E-22 1.7E-26 161.8 14.2 265 38-328 288-573 (577)
169 KOG0290 Conserved WD40 repeat- 99.9 1.7E-20 3.6E-25 141.9 19.4 266 46-340 46-347 (364)
170 KOG0303 Actin-binding protein 99.9 3.4E-20 7.3E-25 145.9 21.7 235 74-341 73-322 (472)
171 KOG1240 Protein kinase contain 99.9 9E-20 1.9E-24 162.5 24.2 253 32-314 1036-1334(1431)
172 KOG4328 WD40 protein [Function 99.9 1E-20 2.3E-25 151.4 16.2 202 150-367 182-396 (498)
173 KOG1538 Uncharacterized conser 99.9 2.2E-20 4.7E-25 156.7 17.9 245 25-314 34-293 (1081)
174 KOG1007 WD repeat protein TSSC 99.9 1.4E-19 2.9E-24 136.9 20.3 244 38-314 57-361 (370)
175 KOG1517 Guanine nucleotide bin 99.9 2E-19 4.3E-24 158.1 23.3 268 54-346 1076-1369(1387)
176 KOG0644 Uncharacterized conser 99.9 4.5E-21 9.7E-26 164.3 12.3 279 34-364 180-474 (1113)
177 KOG1310 WD40 repeat protein [G 99.9 5.8E-20 1.3E-24 150.6 18.1 220 31-272 37-302 (758)
178 KOG0642 Cell-cycle nuclear pro 99.8 2.5E-20 5.4E-25 153.1 14.1 269 56-367 244-558 (577)
179 COG2319 FOG: WD40 repeat [Gene 99.8 1.6E-17 3.5E-22 145.3 33.1 260 39-337 60-337 (466)
180 KOG1587 Cytoplasmic dynein int 99.8 1.2E-18 2.7E-23 149.6 23.7 267 63-355 221-513 (555)
181 KOG1445 Tumor-specific antigen 99.8 5.4E-20 1.2E-24 153.4 14.6 203 86-322 585-806 (1012)
182 PRK11028 6-phosphogluconolacto 99.8 7.6E-18 1.7E-22 141.4 27.9 257 57-347 5-292 (330)
183 KOG2919 Guanine nucleotide-bin 99.8 1.1E-18 2.5E-23 134.0 20.2 248 86-367 53-324 (406)
184 KOG0290 Conserved WD40 repeat- 99.8 2.6E-18 5.6E-23 130.2 20.7 228 41-304 93-356 (364)
185 KOG1963 WD40 repeat protein [G 99.8 7.8E-18 1.7E-22 145.6 25.9 281 42-355 203-537 (792)
186 KOG1188 WD40 repeat protein [G 99.8 3.4E-19 7.3E-24 137.8 15.6 252 31-313 57-345 (376)
187 KOG1445 Tumor-specific antigen 99.8 3E-19 6.4E-24 149.1 15.8 226 60-315 599-845 (1012)
188 COG2319 FOG: WD40 repeat [Gene 99.8 1.8E-16 3.8E-21 138.8 34.1 280 34-367 145-439 (466)
189 KOG1523 Actin-related protein 99.8 1E-17 2.3E-22 128.6 22.1 207 41-276 7-239 (361)
190 KOG1524 WD40 repeat-containing 99.8 2E-18 4.4E-23 141.4 18.7 253 42-352 12-280 (737)
191 KOG1587 Cytoplasmic dynein int 99.8 1.2E-17 2.5E-22 143.7 23.9 247 44-315 242-517 (555)
192 KOG2110 Uncharacterized conser 99.8 9.4E-17 2E-21 125.7 25.2 228 45-315 6-249 (391)
193 KOG2110 Uncharacterized conser 99.8 3.9E-16 8.5E-21 122.3 28.4 246 45-327 47-343 (391)
194 KOG0771 Prolactin regulatory e 99.8 1E-17 2.3E-22 133.2 19.8 186 158-349 148-345 (398)
195 PRK01742 tolB translocation pr 99.8 6.1E-18 1.3E-22 146.2 20.0 233 63-339 183-426 (429)
196 KOG1517 Guanine nucleotide bin 99.8 2E-17 4.4E-22 145.8 21.6 250 31-315 1093-1382(1387)
197 KOG0649 WD40 repeat protein [G 99.8 1.8E-16 3.8E-21 117.4 22.8 232 34-311 52-313 (325)
198 KOG1523 Actin-related protein 99.8 1.2E-16 2.7E-21 122.8 21.7 251 78-362 6-281 (361)
199 KOG0771 Prolactin regulatory e 99.8 8.7E-18 1.9E-22 133.7 15.4 196 86-315 148-355 (398)
200 KOG1310 WD40 repeat protein [G 99.8 4.8E-18 1E-22 139.6 13.4 169 74-273 42-231 (758)
201 KOG4227 WD40 repeat protein [G 99.8 3.4E-17 7.4E-22 129.3 17.6 248 77-367 51-319 (609)
202 KOG0644 Uncharacterized conser 99.8 5.7E-19 1.2E-23 151.7 7.5 242 75-359 183-429 (1113)
203 KOG1963 WD40 repeat protein [G 99.8 1.1E-15 2.4E-20 132.5 26.4 258 52-316 24-377 (792)
204 KOG1240 Protein kinase contain 99.8 3.1E-16 6.7E-21 140.4 23.3 222 69-319 1034-1278(1431)
205 KOG3881 Uncharacterized conser 99.8 2.4E-16 5.3E-21 124.3 19.8 261 42-339 53-342 (412)
206 KOG1524 WD40 repeat-containing 99.8 9.1E-17 2E-21 131.8 17.5 167 166-345 75-244 (737)
207 PRK11028 6-phosphogluconolacto 99.7 1.2E-14 2.7E-19 122.0 27.4 268 36-336 27-327 (330)
208 KOG1272 WD40-repeat-containing 99.7 1.4E-17 2.9E-22 134.1 9.0 272 49-362 134-413 (545)
209 KOG1009 Chromatin assembly com 99.7 1.2E-15 2.7E-20 120.9 19.6 245 34-316 55-374 (434)
210 KOG3881 Uncharacterized conser 99.7 6.7E-16 1.5E-20 121.9 17.4 216 38-282 99-329 (412)
211 KOG0322 G-protein beta subunit 99.7 3.9E-16 8.4E-21 116.9 14.3 251 42-313 54-322 (323)
212 KOG1354 Serine/threonine prote 99.7 1.2E-14 2.5E-19 113.2 22.9 272 43-316 24-361 (433)
213 KOG2394 WD40 protein DMR-N9 [G 99.7 9.2E-16 2E-20 126.0 17.7 172 164-338 183-384 (636)
214 KOG2321 WD40 repeat protein [G 99.7 5.6E-15 1.2E-19 122.4 21.1 272 42-352 49-337 (703)
215 KOG2394 WD40 protein DMR-N9 [G 99.7 3.4E-15 7.3E-20 122.7 18.7 169 92-295 185-383 (636)
216 PRK01742 tolB translocation pr 99.7 1.6E-15 3.4E-20 131.3 18.0 189 153-357 202-402 (429)
217 KOG1334 WD40 repeat protein [G 99.7 7.5E-16 1.6E-20 125.0 14.3 248 77-367 137-421 (559)
218 KOG1272 WD40-repeat-containing 99.7 1.1E-16 2.4E-21 128.9 9.2 226 85-356 132-362 (545)
219 PRK03629 tolB translocation pr 99.7 2.9E-14 6.3E-19 123.1 24.1 230 65-339 180-428 (429)
220 KOG0974 WD-repeat protein WDR6 99.7 1.2E-14 2.5E-19 128.5 21.7 193 155-368 88-286 (967)
221 KOG2111 Uncharacterized conser 99.7 7.5E-14 1.6E-18 107.7 22.9 167 176-352 75-250 (346)
222 KOG1409 Uncharacterized conser 99.7 1.9E-14 4.1E-19 112.0 17.8 249 32-314 12-270 (404)
223 KOG2111 Uncharacterized conser 99.7 6.7E-13 1.5E-17 102.5 25.7 228 47-315 8-257 (346)
224 KOG2139 WD40 repeat protein [G 99.6 3.3E-13 7.2E-18 106.0 22.9 235 44-314 140-431 (445)
225 PRK02889 tolB translocation pr 99.6 1.2E-13 2.6E-18 119.5 22.7 185 153-347 194-389 (427)
226 PRK03629 tolB translocation pr 99.6 2E-13 4.3E-18 118.0 23.4 183 153-347 197-392 (429)
227 PRK02889 tolB translocation pr 99.6 9.6E-14 2.1E-18 120.1 21.3 233 64-339 176-425 (427)
228 PRK04922 tolB translocation pr 99.6 1.6E-13 3.5E-18 119.1 22.4 230 64-338 184-432 (433)
229 PRK04922 tolB translocation pr 99.6 1.4E-13 2.9E-18 119.6 20.4 191 153-355 202-408 (433)
230 PRK05137 tolB translocation pr 99.6 5E-13 1.1E-17 116.2 23.5 182 153-346 200-394 (435)
231 PRK05137 tolB translocation pr 99.6 8.5E-13 1.8E-17 114.8 24.8 229 64-338 182-432 (435)
232 PF08662 eIF2A: Eukaryotic tra 99.6 1.6E-13 3.5E-18 104.6 17.8 149 158-316 9-181 (194)
233 KOG0280 Uncharacterized conser 99.6 1E-12 2.2E-17 100.4 21.2 266 62-358 44-335 (339)
234 KOG4497 Uncharacterized conser 99.6 2.6E-12 5.7E-17 99.8 22.3 287 45-349 49-423 (447)
235 KOG2139 WD40 repeat protein [G 99.6 3.9E-13 8.5E-18 105.6 18.0 205 154-363 98-316 (445)
236 PF02239 Cytochrom_D1: Cytochr 99.6 5.7E-12 1.2E-16 105.8 26.4 248 56-343 8-330 (369)
237 PF08662 eIF2A: Eukaryotic tra 99.6 1.7E-12 3.6E-17 99.1 19.4 112 153-275 58-181 (194)
238 KOG1064 RAVE (regulator of V-A 99.5 7.3E-14 1.6E-18 130.0 12.2 197 79-324 2205-2406(2439)
239 TIGR02800 propeller_TolB tol-p 99.5 6.3E-12 1.4E-16 109.5 22.7 183 153-347 188-383 (417)
240 KOG2041 WD40 repeat protein [G 99.5 3.5E-12 7.6E-17 109.1 20.0 269 44-346 14-326 (1189)
241 TIGR02800 propeller_TolB tol-p 99.5 9.9E-12 2.1E-16 108.3 22.4 209 64-314 170-397 (417)
242 PRK00178 tolB translocation pr 99.5 2.1E-11 4.6E-16 106.3 23.9 183 153-347 197-392 (430)
243 KOG1354 Serine/threonine prote 99.5 2.3E-12 5.1E-17 100.6 15.5 252 81-349 24-350 (433)
244 COG5170 CDC55 Serine/threonine 99.5 1E-11 2.2E-16 96.0 17.8 268 44-314 26-367 (460)
245 PRK04792 tolB translocation pr 99.5 2.9E-11 6.3E-16 105.1 22.8 183 153-347 216-411 (448)
246 KOG4497 Uncharacterized conser 99.5 1.2E-11 2.6E-16 96.2 17.8 188 84-312 12-238 (447)
247 KOG0974 WD-repeat protein WDR6 99.5 3.8E-12 8.2E-17 113.0 16.8 191 88-315 95-289 (967)
248 KOG4547 WD40 repeat-containing 99.5 2.6E-11 5.7E-16 101.4 20.5 142 165-315 69-221 (541)
249 PF10282 Lactonase: Lactonase, 99.5 1.7E-09 3.6E-14 91.2 31.7 254 64-347 13-310 (345)
250 TIGR03300 assembly_YfgL outer 99.5 1.2E-10 2.6E-15 99.9 25.3 289 51-367 62-376 (377)
251 KOG2321 WD40 repeat protein [G 99.4 6.6E-12 1.4E-16 104.6 15.9 184 94-315 147-344 (703)
252 PRK00178 tolB translocation pr 99.4 1.2E-10 2.6E-15 101.6 24.8 230 65-339 180-428 (430)
253 KOG4190 Uncharacterized conser 99.4 1E-12 2.2E-17 109.2 10.7 282 37-366 728-1032(1034)
254 KOG0309 Conserved WD40 repeat- 99.4 1.4E-12 3.1E-17 111.7 11.3 283 49-368 31-337 (1081)
255 KOG2315 Predicted translation 99.4 6.2E-10 1.3E-14 92.9 25.0 303 47-368 37-388 (566)
256 KOG4714 Nucleoporin [Nuclear s 99.4 1.3E-11 2.9E-16 92.8 13.8 237 40-312 31-316 (319)
257 KOG0280 Uncharacterized conser 99.4 3E-10 6.6E-15 87.2 20.7 181 155-341 70-266 (339)
258 KOG1409 Uncharacterized conser 99.4 5.2E-11 1.1E-15 93.3 16.8 239 76-367 18-267 (404)
259 KOG4547 WD40 repeat-containing 99.4 1.9E-10 4.2E-15 96.4 21.0 183 54-274 5-221 (541)
260 PRK04792 tolB translocation pr 99.4 2.7E-10 6E-15 99.1 21.9 229 65-338 199-446 (448)
261 PF02239 Cytochrom_D1: Cytochr 99.4 2.1E-09 4.5E-14 90.5 26.4 266 31-325 23-356 (369)
262 KOG2315 Predicted translation 99.4 9.8E-10 2.1E-14 91.7 23.5 229 48-316 129-392 (566)
263 PF10282 Lactonase: Lactonase, 99.4 1.8E-08 3.9E-13 85.0 31.9 270 47-336 39-345 (345)
264 PRK01029 tolB translocation pr 99.3 1.7E-09 3.7E-14 93.4 25.3 237 65-340 166-426 (428)
265 KOG1064 RAVE (regulator of V-A 99.3 1.1E-11 2.4E-16 116.0 12.1 187 42-281 2206-2406(2439)
266 TIGR03300 assembly_YfgL outer 99.3 3.7E-09 7.9E-14 90.7 26.0 223 88-316 61-299 (377)
267 KOG4190 Uncharacterized conser 99.3 1.1E-11 2.4E-16 103.2 8.5 210 75-313 728-947 (1034)
268 COG5354 Uncharacterized protei 99.3 3.9E-09 8.4E-14 87.3 22.3 289 45-346 33-377 (561)
269 KOG2041 WD40 repeat protein [G 99.3 1.5E-10 3.2E-15 99.4 14.4 239 82-347 14-277 (1189)
270 COG2706 3-carboxymuconate cycl 99.3 6.8E-08 1.5E-12 76.9 27.6 252 63-347 15-309 (346)
271 TIGR02658 TTQ_MADH_Hv methylam 99.3 7.1E-08 1.5E-12 79.6 28.5 258 64-358 27-332 (352)
272 KOG3914 WD repeat protein WDR4 99.3 2.3E-10 5E-15 91.5 13.5 155 157-316 65-225 (390)
273 COG2706 3-carboxymuconate cycl 99.2 9.2E-08 2E-12 76.2 26.9 200 153-355 38-271 (346)
274 COG5170 CDC55 Serine/threonine 99.2 5.1E-10 1.1E-14 86.7 13.1 251 81-348 25-357 (460)
275 PRK04043 tolB translocation pr 99.2 2.2E-08 4.8E-13 86.0 24.4 178 156-347 189-386 (419)
276 KOG4532 WD40-like repeat conta 99.2 1.1E-08 2.5E-13 77.8 19.3 188 56-278 86-287 (344)
277 COG4946 Uncharacterized protei 99.2 2.1E-08 4.5E-13 82.5 21.9 168 53-261 331-506 (668)
278 KOG0309 Conserved WD40 repeat- 99.2 1.3E-10 2.8E-15 100.1 9.8 223 56-315 84-340 (1081)
279 PLN02919 haloacid dehalogenase 99.2 2.3E-07 5E-12 88.7 31.8 247 54-317 580-891 (1057)
280 PRK01029 tolB translocation pr 99.2 1.3E-08 2.8E-13 88.1 21.7 185 154-345 184-387 (428)
281 KOG1912 WD40 repeat protein [G 99.1 2E-08 4.3E-13 87.5 20.7 315 27-345 38-484 (1062)
282 PRK11138 outer membrane biogen 99.1 4E-08 8.7E-13 84.7 23.2 231 54-325 120-362 (394)
283 PLN02919 haloacid dehalogenase 99.1 1.4E-07 2.9E-12 90.2 28.0 198 156-355 625-887 (1057)
284 KOG2066 Vacuolar assembly/sort 99.1 5.1E-09 1.1E-13 91.3 16.6 183 82-314 39-233 (846)
285 KOG4714 Nucleoporin [Nuclear s 99.1 1.6E-09 3.4E-14 81.9 11.1 146 48-226 95-255 (319)
286 KOG4532 WD40-like repeat conta 99.1 5.2E-08 1.1E-12 74.3 19.1 218 92-344 84-318 (344)
287 KOG2114 Vacuolar assembly/sort 99.1 8.2E-08 1.8E-12 84.7 22.5 222 46-293 27-263 (933)
288 PF04762 IKI3: IKI3 family; I 99.1 2.6E-07 5.6E-12 86.8 27.3 306 43-356 74-456 (928)
289 COG5354 Uncharacterized protei 99.1 1.8E-07 3.9E-12 77.7 22.6 265 26-343 110-414 (561)
290 KOG0882 Cyclophilin-related pe 99.0 1.7E-08 3.7E-13 82.4 15.1 243 42-316 7-307 (558)
291 TIGR02658 TTQ_MADH_Hv methylam 99.0 3.3E-06 7.1E-11 70.0 28.7 259 31-324 34-338 (352)
292 COG4946 Uncharacterized protei 99.0 2.6E-07 5.7E-12 76.2 21.8 144 151-301 356-505 (668)
293 KOG2695 WD40 repeat protein [G 99.0 2.5E-09 5.4E-14 84.2 9.9 162 170-337 228-401 (425)
294 KOG2314 Translation initiation 99.0 1.4E-06 3E-11 73.5 24.7 287 50-347 216-556 (698)
295 KOG2695 WD40 repeat protein [G 99.0 2.1E-09 4.6E-14 84.5 7.5 143 58-228 228-379 (425)
296 PF04762 IKI3: IKI3 family; I 99.0 2.4E-06 5.2E-11 80.5 28.3 218 81-341 74-361 (928)
297 PRK11138 outer membrane biogen 99.0 9.7E-07 2.1E-11 76.2 24.2 228 51-316 66-314 (394)
298 PF13360 PQQ_2: PQQ-like domai 98.9 1.1E-06 2.4E-11 70.3 22.9 211 63-316 2-232 (238)
299 PF08450 SGL: SMP-30/Gluconola 98.9 9.7E-06 2.1E-10 65.2 28.2 172 157-341 42-238 (246)
300 PF15492 Nbas_N: Neuroblastoma 98.9 3.3E-06 7.1E-11 65.6 22.5 168 157-328 46-271 (282)
301 PF08450 SGL: SMP-30/Gluconola 98.9 9.5E-06 2.1E-10 65.2 26.8 197 49-278 4-217 (246)
302 KOG2066 Vacuolar assembly/sort 98.9 1E-07 2.2E-12 83.5 15.6 188 44-273 39-233 (846)
303 PF15492 Nbas_N: Neuroblastoma 98.9 6.8E-07 1.5E-11 69.2 18.2 190 48-278 47-264 (282)
304 KOG1275 PAB-dependent poly(A) 98.9 5.7E-08 1.2E-12 86.2 13.8 179 165-352 146-336 (1118)
305 KOG1275 PAB-dependent poly(A) 98.9 5.4E-08 1.2E-12 86.4 13.6 182 54-272 147-341 (1118)
306 KOG3621 WD40 repeat-containing 98.8 2.1E-06 4.5E-11 74.6 21.6 135 46-206 37-180 (726)
307 KOG3914 WD repeat protein WDR4 98.8 9.3E-08 2E-12 77.0 12.2 151 92-278 74-228 (390)
308 PRK04043 tolB translocation pr 98.8 6.9E-06 1.5E-10 70.9 24.4 189 84-316 189-402 (419)
309 PF08596 Lgl_C: Lethal giant l 98.8 1.6E-05 3.4E-10 67.6 25.6 270 84-356 3-335 (395)
310 KOG1912 WD40 repeat protein [G 98.8 1.2E-06 2.5E-11 76.9 19.0 235 47-314 18-304 (1062)
311 PF00400 WD40: WD domain, G-be 98.8 3E-08 6.5E-13 54.0 5.8 38 186-223 1-39 (39)
312 PF00400 WD40: WD domain, G-be 98.8 3.3E-08 7.1E-13 53.8 5.9 36 147-182 4-39 (39)
313 KOG0882 Cyclophilin-related pe 98.7 1.3E-07 2.8E-12 77.4 10.9 243 80-358 7-307 (558)
314 PF13360 PQQ_2: PQQ-like domai 98.7 1.4E-05 3E-10 64.0 22.5 188 53-278 35-235 (238)
315 KOG1832 HIV-1 Vpr-binding prot 98.7 1.6E-08 3.5E-13 89.4 5.5 228 21-301 1078-1318(1516)
316 KOG1645 RING-finger-containing 98.7 1.5E-06 3.3E-11 70.3 14.8 79 149-228 188-269 (463)
317 PF11768 DUF3312: Protein of u 98.7 4E-05 8.6E-10 65.8 23.5 113 154-275 205-331 (545)
318 KOG2114 Vacuolar assembly/sort 98.6 5.7E-06 1.2E-10 73.5 18.1 188 161-350 30-237 (933)
319 KOG1920 IkappaB kinase complex 98.6 8.6E-05 1.9E-09 69.0 24.6 215 83-340 69-346 (1265)
320 KOG1920 IkappaB kinase complex 98.6 1.1E-05 2.3E-10 74.6 18.4 191 154-345 68-306 (1265)
321 KOG3621 WD40 repeat-containing 98.5 3.6E-06 7.9E-11 73.1 14.1 201 153-355 32-243 (726)
322 KOG2314 Translation initiation 98.5 4.1E-05 8.8E-10 65.0 19.5 216 86-345 214-462 (698)
323 KOG1832 HIV-1 Vpr-binding prot 98.5 9E-08 2E-12 84.9 3.4 180 146-342 1093-1280(1516)
324 KOG4649 PQQ (pyrrolo-quinoline 98.5 0.00033 7.1E-09 54.0 23.2 138 55-225 24-165 (354)
325 cd00216 PQQ_DH Dehydrogenases 98.4 0.00032 6.8E-09 62.4 24.7 245 55-325 111-433 (488)
326 PF11768 DUF3312: Protein of u 98.4 0.00084 1.8E-08 58.0 28.2 101 240-341 256-370 (545)
327 PF06977 SdiA-regulated: SdiA- 98.4 0.00014 3E-09 57.5 19.6 189 152-342 19-235 (248)
328 KOG1645 RING-finger-containing 98.4 4.4E-05 9.5E-10 62.2 16.2 76 39-115 188-271 (463)
329 KOG1008 Uncharacterized conser 98.4 1.3E-07 2.8E-12 80.9 2.2 194 83-314 57-275 (783)
330 cd00216 PQQ_DH Dehydrogenases 98.4 0.0015 3.3E-08 58.1 26.6 200 52-280 59-326 (488)
331 PF07433 DUF1513: Protein of u 98.3 0.0012 2.6E-08 53.2 25.9 209 92-340 17-269 (305)
332 KOG1008 Uncharacterized conser 98.3 6.8E-07 1.5E-11 76.7 3.6 206 154-362 56-281 (783)
333 PRK02888 nitrous-oxide reducta 98.2 0.00032 6.9E-09 62.0 19.3 129 217-347 296-450 (635)
334 PF07433 DUF1513: Protein of u 98.2 0.0017 3.7E-08 52.3 23.7 180 92-308 62-279 (305)
335 PF03178 CPSF_A: CPSF A subuni 98.2 0.00021 4.5E-09 60.0 17.2 177 176-357 2-201 (321)
336 PF04053 Coatomer_WDAD: Coatom 98.2 0.00052 1.1E-08 59.4 19.0 225 40-314 28-262 (443)
337 PF08596 Lgl_C: Lethal giant l 98.2 0.0021 4.4E-08 55.0 22.1 229 46-304 3-326 (395)
338 COG0823 TolB Periplasmic compo 98.1 0.00014 2.9E-09 62.7 14.7 186 153-349 191-390 (425)
339 PF14783 BBS2_Mid: Ciliary BBS 98.1 0.001 2.3E-08 44.5 14.7 100 157-268 2-109 (111)
340 PF04053 Coatomer_WDAD: Coatom 98.1 0.0025 5.4E-08 55.3 20.8 189 153-365 31-229 (443)
341 PF14783 BBS2_Mid: Ciliary BBS 98.0 0.00054 1.2E-08 45.9 13.0 62 47-109 2-70 (111)
342 KOG4649 PQQ (pyrrolo-quinoline 98.0 0.0033 7E-08 48.8 19.4 138 92-269 23-161 (354)
343 PF04841 Vps16_N: Vps16, N-ter 98.0 0.0013 2.9E-08 56.8 18.9 167 177-355 62-243 (410)
344 PF08553 VID27: VID27 cytoplas 98.0 0.00086 1.9E-08 61.6 18.1 137 61-225 501-647 (794)
345 PF03178 CPSF_A: CPSF A subuni 98.0 0.0025 5.5E-08 53.5 19.3 141 166-314 42-202 (321)
346 PF04841 Vps16_N: Vps16, N-ter 98.0 0.01 2.2E-07 51.5 27.2 49 65-113 62-112 (410)
347 KOG3617 WD40 and TPR repeat-co 97.9 0.0012 2.5E-08 59.6 16.9 71 156-226 61-132 (1416)
348 PF08553 VID27: VID27 cytoplas 97.9 0.00044 9.5E-09 63.4 14.2 137 173-313 501-646 (794)
349 KOG4640 Anaphase-promoting com 97.9 0.00011 2.4E-09 63.5 9.3 95 153-253 19-115 (665)
350 KOG2444 WD40 repeat protein [G 97.9 5.3E-05 1.1E-09 57.2 6.6 125 209-343 32-160 (238)
351 PHA02713 hypothetical protein; 97.8 0.0041 8.9E-08 56.3 18.2 150 165-322 351-541 (557)
352 PF06433 Me-amine-dh_H: Methyl 97.8 0.013 2.8E-07 48.1 19.1 200 159-362 99-326 (342)
353 COG3391 Uncharacterized conser 97.8 0.017 3.7E-07 49.7 21.2 179 158-347 77-271 (381)
354 PF00780 CNH: CNH domain; Int 97.7 0.017 3.7E-07 47.4 25.5 245 50-325 3-264 (275)
355 COG3386 Gluconolactonase [Carb 97.7 0.018 4E-07 47.4 22.3 172 155-338 66-264 (307)
356 PRK02888 nitrous-oxide reducta 97.7 0.0062 1.3E-07 54.2 17.7 107 164-274 286-405 (635)
357 KOG2395 Protein involved in va 97.7 0.00095 2.1E-08 56.9 12.2 138 168-313 348-499 (644)
358 smart00320 WD40 WD40 repeats. 97.7 0.00023 4.9E-09 37.8 5.8 38 186-223 2-40 (40)
359 KOG4640 Anaphase-promoting com 97.6 0.00036 7.7E-09 60.5 8.8 93 196-295 20-114 (665)
360 smart00320 WD40 WD40 repeats. 97.6 0.00021 4.6E-09 37.9 5.1 34 149-182 7-40 (40)
361 KOG2079 Vacuolar assembly/sort 97.6 0.0057 1.2E-07 56.9 16.3 111 82-225 89-203 (1206)
362 KOG4441 Proteins containing BT 97.6 0.033 7.1E-07 50.5 21.2 228 54-321 285-553 (571)
363 KOG3617 WD40 and TPR repeat-co 97.5 0.00023 4.9E-09 63.9 6.5 108 158-273 19-131 (1416)
364 COG3391 Uncharacterized conser 97.5 0.048 1E-06 47.0 22.4 158 156-316 117-285 (381)
365 COG0823 TolB Periplasmic compo 97.5 0.0042 9.1E-08 53.7 13.9 116 155-276 238-361 (425)
366 TIGR03075 PQQ_enz_alc_DH PQQ-d 97.5 0.064 1.4E-06 48.3 27.3 176 52-229 118-337 (527)
367 KOG4441 Proteins containing BT 97.5 0.027 5.8E-07 51.1 18.9 159 159-326 327-511 (571)
368 PF00930 DPPIV_N: Dipeptidyl p 97.4 0.025 5.4E-07 48.2 16.9 186 154-342 42-294 (353)
369 COG3386 Gluconolactonase [Carb 97.3 0.065 1.4E-06 44.2 20.6 191 56-278 39-247 (307)
370 KOG2444 WD40 repeat protein [G 97.3 0.0014 3E-08 49.7 7.1 139 56-226 32-178 (238)
371 PHA02713 hypothetical protein; 97.3 0.031 6.7E-07 50.7 16.9 94 177-277 433-537 (557)
372 KOG2395 Protein involved in va 97.2 0.0064 1.4E-07 52.1 10.6 130 209-347 348-490 (644)
373 PF00780 CNH: CNH domain; Int 97.1 0.1 2.3E-06 42.7 23.5 224 91-360 6-259 (275)
374 PHA03098 kelch-like protein; P 97.1 0.058 1.3E-06 49.0 17.6 160 165-331 342-528 (534)
375 PF06977 SdiA-regulated: SdiA- 97.1 0.091 2E-06 41.8 24.1 205 39-270 16-247 (248)
376 PF12894 Apc4_WD40: Anaphase-p 97.1 0.0022 4.8E-08 35.8 5.1 35 153-188 10-44 (47)
377 TIGR03075 PQQ_enz_alc_DH PQQ-d 97.1 0.22 4.7E-06 45.0 26.7 68 53-120 68-148 (527)
378 KOG4499 Ca2+-binding protein R 97.0 0.029 6.3E-07 43.1 11.8 50 159-208 216-265 (310)
379 KOG2079 Vacuolar assembly/sort 97.0 0.0062 1.3E-07 56.7 9.3 102 254-357 98-204 (1206)
380 PRK13616 lipoprotein LpqB; Pro 96.9 0.29 6.3E-06 44.7 19.7 146 157-309 399-563 (591)
381 PRK13616 lipoprotein LpqB; Pro 96.9 0.15 3.3E-06 46.4 17.7 173 155-342 350-554 (591)
382 PF14870 PSII_BNR: Photosynthe 96.9 0.2 4.4E-06 41.2 25.1 155 153-311 143-301 (302)
383 PF14727 PHTB1_N: PTHB1 N-term 96.8 0.27 5.9E-06 42.4 29.3 147 55-225 38-204 (418)
384 PHA03098 kelch-like protein; P 96.8 0.17 3.6E-06 46.1 17.6 64 49-112 290-368 (534)
385 PF12894 Apc4_WD40: Anaphase-p 96.8 0.0069 1.5E-07 33.8 5.3 31 243-273 11-41 (47)
386 PF06433 Me-amine-dh_H: Methyl 96.6 0.31 6.8E-06 40.3 20.2 153 167-325 148-329 (342)
387 KOG2377 Uncharacterized conser 96.5 0.16 3.5E-06 43.2 13.9 140 200-344 26-169 (657)
388 KOG1898 Splicing factor 3b, su 96.4 0.58 1.3E-05 44.3 17.6 173 177-357 854-1047(1205)
389 TIGR03074 PQQ_membr_DH membran 96.4 0.92 2E-05 42.8 21.2 213 92-316 194-479 (764)
390 KOG1916 Nuclear protein, conta 96.3 0.001 2.2E-08 60.4 0.1 71 165-272 194-264 (1283)
391 KOG1916 Nuclear protein, conta 96.2 0.0092 2E-07 54.6 5.5 158 176-337 111-292 (1283)
392 COG3204 Uncharacterized protei 96.2 0.49 1.1E-05 38.1 19.1 189 153-341 84-296 (316)
393 PF02897 Peptidase_S9_N: Proly 96.2 0.77 1.7E-05 40.3 22.8 181 157-341 126-339 (414)
394 PF05694 SBP56: 56kDa selenium 96.1 0.31 6.8E-06 41.7 13.4 145 158-303 184-392 (461)
395 KOG4499 Ca2+-binding protein R 96.0 0.53 1.2E-05 36.5 17.0 141 154-297 108-264 (310)
396 PF12234 Rav1p_C: RAVE protein 96.0 0.49 1.1E-05 43.0 14.8 108 245-352 31-152 (631)
397 PF15390 DUF4613: Domain of un 96.0 0.26 5.6E-06 43.5 12.5 115 153-272 55-185 (671)
398 PF14583 Pectate_lyase22: Olig 95.9 0.91 2E-05 38.5 24.0 163 176-343 168-365 (386)
399 TIGR02604 Piru_Ver_Nterm putat 95.8 0.91 2E-05 39.0 15.4 147 155-303 14-202 (367)
400 PHA02790 Kelch-like protein; P 95.8 1.2 2.6E-05 39.9 16.6 141 165-316 318-472 (480)
401 PF08728 CRT10: CRT10; InterP 95.7 1.2 2.5E-05 41.2 16.1 114 155-272 101-245 (717)
402 PF12234 Rav1p_C: RAVE protein 95.7 0.56 1.2E-05 42.7 14.1 113 159-273 34-156 (631)
403 COG4590 ABC-type uncharacteriz 95.4 0.099 2.2E-06 44.4 7.9 161 153-316 219-388 (733)
404 KOG2247 WD40 repeat-containing 95.4 0.0014 3E-08 55.5 -2.7 133 56-220 48-183 (615)
405 PF10313 DUF2415: Uncharacteri 95.4 0.1 2.2E-06 28.3 5.3 32 244-275 1-35 (43)
406 KOG3630 Nuclear pore complex, 95.4 0.13 2.9E-06 48.7 9.4 135 155-295 101-252 (1405)
407 PF10647 Gmad1: Lipoprotein Lp 95.4 0.36 7.8E-06 38.9 11.0 99 245-345 25-128 (253)
408 KOG1897 Damage-specific DNA bi 95.4 2.6 5.7E-05 40.0 29.6 296 44-352 530-892 (1096)
409 PF08728 CRT10: CRT10; InterP 95.2 1.2 2.5E-05 41.2 14.5 166 44-224 40-245 (717)
410 PF10313 DUF2415: Uncharacteri 95.2 0.11 2.3E-06 28.2 5.0 30 156-185 2-34 (43)
411 COG3490 Uncharacterized protei 95.1 0.87 1.9E-05 36.5 11.6 104 248-352 72-185 (366)
412 PRK13684 Ycf48-like protein; P 95.0 1.9 4.2E-05 36.5 25.8 152 154-312 172-329 (334)
413 TIGR02604 Piru_Ver_Nterm putat 95.0 1.8 3.9E-05 37.3 14.7 145 198-349 15-204 (367)
414 KOG3630 Nuclear pore complex, 95.0 0.58 1.3E-05 44.8 12.1 186 159-344 46-259 (1405)
415 PHA02790 Kelch-like protein; P 95.0 2.1 4.5E-05 38.4 15.6 150 165-325 271-434 (480)
416 PLN02193 nitrile-specifier pro 95.0 2.6 5.6E-05 37.7 22.9 153 165-323 228-419 (470)
417 PF15390 DUF4613: Domain of un 94.9 1.7 3.6E-05 38.8 13.7 152 155-313 20-185 (671)
418 PF05096 Glu_cyclase_2: Glutam 94.8 1.7 3.6E-05 34.9 20.1 176 156-342 46-244 (264)
419 PF07250 Glyoxal_oxid_N: Glyox 94.8 1.6 3.5E-05 34.7 15.1 144 178-325 48-206 (243)
420 PF00930 DPPIV_N: Dipeptidyl p 94.8 2.3 5.1E-05 36.3 21.2 53 63-116 22-77 (353)
421 PF14870 PSII_BNR: Photosynthe 94.8 2 4.4E-05 35.5 19.4 140 194-341 142-288 (302)
422 PLN02153 epithiospecifier prot 94.7 2.4 5.2E-05 36.0 21.5 57 265-321 217-291 (341)
423 COG5167 VID27 Protein involved 94.7 1.1 2.4E-05 39.1 12.0 138 170-314 484-632 (776)
424 PF07569 Hira: TUP1-like enhan 94.6 0.41 9E-06 37.5 9.1 83 83-184 13-95 (219)
425 PF10168 Nup88: Nuclear pore c 94.5 4.3 9.4E-05 38.2 22.0 34 153-186 145-181 (717)
426 KOG2280 Vacuolar assembly/sort 94.5 4 8.6E-05 37.7 19.9 177 64-277 64-250 (829)
427 PF07995 GSDH: Glucose / Sorbo 94.4 1.8 3.9E-05 36.6 13.1 106 156-263 3-133 (331)
428 COG1520 FOG: WD40-like repeat 94.3 3.2 6.9E-05 35.8 19.4 107 91-228 67-174 (370)
429 KOG1897 Damage-specific DNA bi 94.2 5.3 0.00012 38.1 25.5 245 65-344 471-730 (1096)
430 KOG2377 Uncharacterized conser 94.2 1.6 3.5E-05 37.5 11.9 103 153-261 65-171 (657)
431 PF10433 MMS1_N: Mono-function 94.1 4.3 9.4E-05 36.8 22.5 248 54-338 222-503 (504)
432 COG3204 Uncharacterized protei 94.1 2.7 5.8E-05 34.1 16.8 167 78-275 81-265 (316)
433 COG5276 Uncharacterized conser 94.0 2.7 5.9E-05 34.0 25.8 231 44-314 86-327 (370)
434 PF07569 Hira: TUP1-like enhan 93.9 0.67 1.4E-05 36.4 8.8 67 45-112 13-97 (219)
435 PF02897 Peptidase_S9_N: Proly 93.6 4.8 0.0001 35.4 26.3 157 157-320 229-410 (414)
436 PF14655 RAB3GAP2_N: Rab3 GTPa 93.5 1.3 2.8E-05 38.3 10.6 77 151-227 304-400 (415)
437 COG4257 Vgb Streptogramin lyas 93.5 3.3 7.3E-05 33.2 14.7 146 156-313 63-217 (353)
438 KOG2247 WD40 repeat-containing 93.4 0.013 2.8E-07 49.9 -1.4 138 158-305 38-179 (615)
439 COG5276 Uncharacterized conser 93.3 3.7 8.1E-05 33.3 24.5 238 37-313 121-368 (370)
440 PF14583 Pectate_lyase22: Olig 92.8 5.6 0.00012 34.0 16.3 67 161-227 42-112 (386)
441 KOG1900 Nuclear pore complex, 92.7 3.1 6.7E-05 40.9 12.5 82 193-274 175-273 (1311)
442 PRK10115 protease 2; Provision 92.5 9.6 0.00021 36.1 21.5 112 156-273 128-255 (686)
443 PF05694 SBP56: 56kDa selenium 92.2 5.4 0.00012 34.6 12.2 63 197-262 312-392 (461)
444 COG5167 VID27 Protein involved 92.2 2.8 6.1E-05 36.7 10.6 127 209-346 482-621 (776)
445 PF10168 Nup88: Nuclear pore c 91.9 12 0.00025 35.5 15.8 82 197-278 85-184 (717)
446 PF14655 RAB3GAP2_N: Rab3 GTPa 91.7 8.4 0.00018 33.6 28.1 73 243-316 307-400 (415)
447 PF14761 HPS3_N: Hermansky-Pud 91.3 4.8 0.0001 31.1 10.0 131 48-186 21-165 (215)
448 PRK14131 N-acetylneuraminic ac 91.0 9.7 0.00021 33.0 20.1 39 267-305 314-353 (376)
449 TIGR02276 beta_rpt_yvtn 40-res 90.9 1.5 3.3E-05 23.4 6.2 31 164-194 1-32 (42)
450 PLN00033 photosystem II stabil 90.5 11 0.00024 32.8 31.6 136 199-342 241-384 (398)
451 PF10647 Gmad1: Lipoprotein Lp 90.5 8.2 0.00018 31.2 21.0 111 156-266 67-188 (253)
452 PF14727 PHTB1_N: PTHB1 N-term 90.0 13 0.00027 32.6 24.1 146 92-273 37-204 (418)
453 COG3292 Predicted periplasmic 89.9 3.2 6.9E-05 36.9 8.9 138 195-341 163-302 (671)
454 PF11715 Nup160: Nucleoporin N 89.9 2.7 5.9E-05 38.5 9.3 37 156-192 216-256 (547)
455 PF05096 Glu_cyclase_2: Glutam 89.9 9.2 0.0002 30.8 16.8 158 84-277 46-207 (264)
456 PF12657 TFIIIC_delta: Transcr 89.7 3.3 7.1E-05 31.2 8.2 29 198-226 87-122 (173)
457 TIGR03548 mutarot_permut cycli 89.5 12 0.00026 31.6 19.7 63 165-227 123-196 (323)
458 PF14781 BBS2_N: Ciliary BBSom 89.4 5.9 0.00013 28.0 12.8 108 160-277 4-129 (136)
459 KOG1896 mRNA cleavage and poly 89.2 25 0.00054 34.9 24.3 180 174-367 1002-1210(1366)
460 PF12341 DUF3639: Protein of u 88.9 1.4 3E-05 21.2 3.6 24 46-69 3-26 (27)
461 COG3490 Uncharacterized protei 88.9 11 0.00024 30.6 15.0 99 199-303 70-180 (366)
462 PF14781 BBS2_N: Ciliary BBSom 88.5 6.9 0.00015 27.7 13.8 110 203-316 5-127 (136)
463 TIGR03606 non_repeat_PQQ dehyd 88.2 18 0.00039 32.1 13.4 110 196-305 29-166 (454)
464 KOG2280 Vacuolar assembly/sort 87.5 25 0.00054 32.9 15.5 160 34-193 73-255 (829)
465 TIGR03074 PQQ_membr_DH membran 87.5 28 0.0006 33.4 20.0 116 166-281 194-352 (764)
466 KOG1900 Nuclear pore complex, 87.0 35 0.00077 34.2 15.4 144 60-229 95-276 (1311)
467 KOG1898 Splicing factor 3b, su 86.3 35 0.00075 33.4 16.3 70 153-222 581-668 (1205)
468 smart00564 PQQ beta-propeller 86.0 2.4 5.1E-05 21.2 3.9 24 168-191 8-31 (33)
469 KOG4460 Nuclear pore complex, 85.7 7.8 0.00017 34.3 8.7 73 155-227 104-200 (741)
470 PF12768 Rax2: Cortical protei 85.5 19 0.00041 29.6 11.9 114 216-337 15-145 (281)
471 KOG2714 SETA binding protein S 85.3 8.9 0.00019 32.9 8.6 134 92-277 235-375 (465)
472 TIGR03548 mutarot_permut cycli 85.2 22 0.00047 30.0 21.5 136 165-305 72-233 (323)
473 TIGR03547 muta_rot_YjhT mutatr 84.8 24 0.00052 30.1 20.3 33 291-323 253-307 (346)
474 COG3823 Glutamine cyclotransfe 83.9 18 0.00039 28.0 14.0 102 165-275 55-160 (262)
475 PF11715 Nup160: Nucleoporin N 83.8 6.2 0.00014 36.2 8.1 34 244-277 215-252 (547)
476 PF07676 PD40: WD40-like Beta 83.3 2 4.3E-05 22.6 3.0 19 326-344 6-24 (39)
477 PF01011 PQQ: PQQ enzyme repea 83.3 4 8.7E-05 21.4 4.1 27 168-194 2-28 (38)
478 PRK13684 Ycf48-like protein; P 83.0 28 0.00061 29.6 29.8 144 196-347 172-321 (334)
479 PF07995 GSDH: Glucose / Sorbo 82.7 29 0.00062 29.5 26.5 51 295-345 270-322 (331)
480 TIGR03547 muta_rot_YjhT mutatr 82.3 30 0.00066 29.5 20.5 12 176-187 168-179 (346)
481 COG4590 ABC-type uncharacteriz 81.8 14 0.00031 32.1 8.6 105 164-276 278-389 (733)
482 COG3292 Predicted periplasmic 81.5 41 0.0009 30.5 15.8 146 45-224 165-317 (671)
483 KOG1520 Predicted alkaloid syn 81.2 33 0.00073 29.3 11.9 44 301-347 194-237 (376)
484 KOG3522 Predicted guanine nucl 80.5 19 0.00042 34.0 9.5 141 56-226 549-698 (925)
485 KOG1983 Tomosyn and related SN 80.4 66 0.0014 32.1 16.1 70 242-316 197-266 (993)
486 TIGR02276 beta_rpt_yvtn 40-res 80.4 6.8 0.00015 20.8 5.8 40 294-336 1-41 (42)
487 PLN02153 epithiospecifier prot 79.7 38 0.00081 28.9 21.1 62 51-112 30-111 (341)
488 PF13570 PQQ_3: PQQ-like domai 77.9 6.9 0.00015 20.7 3.9 24 87-110 16-39 (40)
489 PRK14131 N-acetylneuraminic ac 77.2 48 0.001 28.7 19.2 14 292-305 276-289 (376)
490 PF10433 MMS1_N: Mono-function 76.5 61 0.0013 29.5 22.4 87 252-339 219-310 (504)
491 KOG3522 Predicted guanine nucl 76.5 54 0.0012 31.3 11.0 109 155-274 582-698 (925)
492 PF14779 BBS1: Ciliary BBSome 76.3 39 0.00085 27.3 9.2 70 153-222 175-255 (257)
493 TIGR03606 non_repeat_PQQ dehyd 75.6 59 0.0013 29.0 15.1 55 153-207 28-89 (454)
494 KOG4659 Uncharacterized conser 74.1 1.1E+02 0.0023 31.3 19.0 84 32-115 335-432 (1899)
495 PF11635 Med16: Mediator compl 73.9 72 0.0016 30.8 11.9 123 92-220 199-345 (753)
496 PF01436 NHL: NHL repeat; Int 73.3 8.9 0.00019 18.4 4.0 25 246-270 4-28 (28)
497 PRK13615 lipoprotein LpqB; Pro 72.3 52 0.0011 30.3 10.0 94 247-344 337-432 (557)
498 PF13449 Phytase-like: Esteras 72.3 60 0.0013 27.5 16.1 147 197-344 20-230 (326)
499 PF08801 Nucleoporin_N: Nup133 72.0 71 0.0015 28.3 12.0 31 244-274 190-220 (422)
500 COG1520 FOG: WD40-like repeat 71.6 67 0.0014 27.8 24.9 196 54-282 68-277 (370)
No 1
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=7.1e-53 Score=326.19 Aligned_cols=289 Identities=25% Similarity=0.373 Sum_probs=254.3
Q ss_pred CceeeeccCcCCcEEEEEecCC--EEEEccCCCcEEEEcCC--cceecccCCCCCeeEEEEe--CCEEEEEeCCCeEEEE
Q 047325 34 NGLIGSLVREEGHIYSLAASKD--LLYTGSDSKNIRVWKNL--KEFCGFKASSGLVKAIVIS--GEKIFTGHQDGKIRVW 107 (368)
Q Consensus 34 ~~~~~~~~~h~~~i~~~~~~~~--~l~s~~~dg~i~iw~~~--~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~vw 107 (368)
...-.++.||.++|.|++|+|+ .|+||+.|.++|+||+. ++..+.++|...|.|++|+ |..|++|+.||+|++|
T Consensus 105 trCssS~~GH~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~TeTp~~t~KgH~~WVlcvawsPDgk~iASG~~dg~I~lw 184 (480)
T KOG0271|consen 105 TRCSSSIAGHGEAVLSVQFSPTGSRLVTGSGDTTVRLWDLDTETPLFTCKGHKNWVLCVAWSPDGKKIASGSKDGSIRLW 184 (480)
T ss_pred ceeccccCCCCCcEEEEEecCCCceEEecCCCceEEeeccCCCCcceeecCCccEEEEEEECCCcchhhccccCCeEEEe
Confidence 4455679999999999999976 99999999999999976 4566789999999999998 8899999999999999
Q ss_pred eecCCCccccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcC-----CCCEEEEEeCCCcEEEEE
Q 047325 108 KISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQ-----DCGLLYTASWDRTFKVWR 182 (368)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-----~~~~l~~~~~d~~i~iwd 182 (368)
|..++++.... +.+|...|++++|.| ..++|++++.||.|+|||
T Consensus 185 dpktg~~~g~~-------------------------------l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd 233 (480)
T KOG0271|consen 185 DPKTGQQIGRA-------------------------------LRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWD 233 (480)
T ss_pred cCCCCCccccc-------------------------------ccCcccceeEEeecccccCCCccceecccCCCCEEEEE
Confidence 99998764433 345999999999976 567999999999999999
Q ss_pred ccCCeEEEEeecCCCceEEEEeCCCCeEEEEcCCCeEEEEEcCCCCCC--------------------------------
Q 047325 183 ISDSKCLESVSAHDDAVNSVVSSSEGLIFTGSADGTVKVWKREQHGKG-------------------------------- 230 (368)
Q Consensus 183 ~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~-------------------------------- 230 (368)
+..++++..+.+|..+|+|+.|..+|++++|+.|++|++|+...+...
T Consensus 234 ~~~~~~~~~lsgHT~~VTCvrwGG~gliySgS~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~ 313 (480)
T KOG0271|consen 234 TKLGTCVRTLSGHTASVTCVRWGGEGLIYSGSQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRK 313 (480)
T ss_pred ccCceEEEEeccCccceEEEEEcCCceEEecCCCceEEEEEccchhHHHhhcccchheeeeeccchhhhhcccccccccc
Confidence 999999999999999999999999999999999999999986542100
Q ss_pred -----------------------------------------cccccceeeccccccEEEEEEcCCCCEEEEecCCCcEEE
Q 047325 231 -----------------------------------------TKHSLAQTLLKQECAVTALVVSSSRSIVYCGSSDGLVNF 269 (368)
Q Consensus 231 -----------------------------------------~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i 269 (368)
...+++....+|+.-|+.+.|+||++++|+++-|..|++
T Consensus 314 ~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~kkpi~rmtgHq~lVn~V~fSPd~r~IASaSFDkSVkL 393 (480)
T KOG0271|consen 314 PKSFSEEQKKALERYEAVLKDSGERLVSGSDDFTLFLWNPFKSKKPITRMTGHQALVNHVSFSPDGRYIASASFDKSVKL 393 (480)
T ss_pred CCChHHHHHHHHHHHHHhhccCcceeEEecCCceEEEecccccccchhhhhchhhheeeEEECCCccEEEEeecccceee
Confidence 011223355678889999999999999999999999999
Q ss_pred EeCCCccccceeeeccceEEEEEEe--CCCEEEEeeCCCeEEEEecCCCceeeeEeeeccccCeeEEEEecCCeeeecCC
Q 047325 270 WEREKQLSHGGVLKGHKLAVLCLAA--AGKLVFSGSADKTICVWRRDGAIHTCLSVLTGHTGPVKCLAVEEDRDSSSSTS 347 (368)
Q Consensus 270 ~d~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~ 347 (368)
||.++++.+ ..+.+|-..|+.+++ |.++|++|+.|.++++|++.+. +....+.+|.+.|.++.|+|||+
T Consensus 394 W~g~tGk~l-asfRGHv~~VYqvawsaDsRLlVS~SkDsTLKvw~V~tk--Kl~~DLpGh~DEVf~vDwspDG~------ 464 (480)
T KOG0271|consen 394 WDGRTGKFL-ASFRGHVAAVYQVAWSADSRLLVSGSKDSTLKVWDVRTK--KLKQDLPGHADEVFAVDWSPDGQ------ 464 (480)
T ss_pred eeCCCcchh-hhhhhccceeEEEEeccCccEEEEcCCCceEEEEEeeee--eecccCCCCCceEEEEEecCCCc------
Confidence 999998776 688899999976665 7889999999999999999887 77889999999999999999999
Q ss_pred cceEEEEEeeCCcccccccCC
Q 047325 348 SCAQRWIVYSGSLDKSDDDVH 368 (368)
Q Consensus 348 ~~~~~w~l~sg~~D~~v~i~h 368 (368)
.+++|+.|+.+|+|.
T Consensus 465 ------rV~sggkdkv~~lw~ 479 (480)
T KOG0271|consen 465 ------RVASGGKDKVLRLWR 479 (480)
T ss_pred ------eeecCCCceEEEeec
Confidence 899999999999983
No 2
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=3e-50 Score=315.18 Aligned_cols=284 Identities=23% Similarity=0.325 Sum_probs=253.1
Q ss_pred CCCceeeeccCcCCcEEEEEecC--CEEEEccCCCcEEEEcCC--cceecccCCCCCeeEEEEe----CCEEEEEeCCCe
Q 047325 32 PQNGLIGSLVREEGHIYSLAASK--DLLYTGSDSKNIRVWKNL--KEFCGFKASSGLVKAIVIS----GEKIFTGHQDGK 103 (368)
Q Consensus 32 ~~~~~~~~~~~h~~~i~~~~~~~--~~l~s~~~dg~i~iw~~~--~~~~~~~~~~~~v~~~~~~----~~~l~s~~~dg~ 103 (368)
.+-.+...-.+-+.+|..+.|+. +.|+|||.+|.+++|+.. ..++.+.+|...|.++.|. +..+++|+.||+
T Consensus 163 ~~~~l~~SQ~gd~rPis~~~fS~ds~~laT~swsG~~kvW~~~~~~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgt 242 (459)
T KOG0272|consen 163 QSLELVCSQVGDTRPISGCSFSRDSKHLATGSWSGLVKVWSVPQCNLLQTLRGHTSRVGAAVFHPVDSDLNLATASADGT 242 (459)
T ss_pred hhhhhhhhhccCCCcceeeEeecCCCeEEEeecCCceeEeecCCcceeEEEeccccceeeEEEccCCCccceeeeccCCc
Confidence 33445556667788999988874 499999999999999987 4577899999999999998 348999999999
Q ss_pred EEEEeecCCCccccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcCCCCEEEEEeCCCcEEEEEc
Q 047325 104 IRVWKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCGLLYTASWDRTFKVWRI 183 (368)
Q Consensus 104 i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~ 183 (368)
+++|++++...... +.+|...|..++|+|+|++|++++.|.+-++||+
T Consensus 243 vklw~~~~e~~l~~--------------------------------l~gH~~RVs~VafHPsG~~L~TasfD~tWRlWD~ 290 (459)
T KOG0272|consen 243 VKLWKLSQETPLQD--------------------------------LEGHLARVSRVAFHPSGKFLGTASFDSTWRLWDL 290 (459)
T ss_pred eeeeccCCCcchhh--------------------------------hhcchhhheeeeecCCCceeeecccccchhhccc
Confidence 99999988754333 3459999999999999999999999999999999
Q ss_pred cCCeEEEEeecCCCceEEEEeCCCC-eEEEEcCCCeEEEEEcCCCCCCcccccceeeccccccEEEEEEcCCCCEEEEec
Q 047325 184 SDSKCLESVSAHDDAVNSVVSSSEG-LIFTGSADGTVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSSSRSIVYCGS 262 (368)
Q Consensus 184 ~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~ 262 (368)
++++.+...++|...|.+++|.+|| .+++|+.|..-+|||+|++ .++..+.+|...|.+++|+|+|..||+|+
T Consensus 291 ~tk~ElL~QEGHs~~v~~iaf~~DGSL~~tGGlD~~~RvWDlRtg------r~im~L~gH~k~I~~V~fsPNGy~lATgs 364 (459)
T KOG0272|consen 291 ETKSELLLQEGHSKGVFSIAFQPDGSLAATGGLDSLGRVWDLRTG------RCIMFLAGHIKEILSVAFSPNGYHLATGS 364 (459)
T ss_pred ccchhhHhhcccccccceeEecCCCceeeccCccchhheeecccC------cEEEEecccccceeeEeECCCceEEeecC
Confidence 9999999999999999999999999 9999999999999999988 35778889999999999999999999999
Q ss_pred CCCcEEEEeCCCccccceeeeccceEE--EEEEe-CCCEEEEeeCCCeEEEEecCCCceeeeEeeeccccCeeEEEEecC
Q 047325 263 SDGLVNFWEREKQLSHGGVLKGHKLAV--LCLAA-AGKLVFSGSADKTICVWRRDGAIHTCLSVLTGHTGPVKCLAVEED 339 (368)
Q Consensus 263 ~dg~i~i~d~~~~~~~~~~~~~~~~~~--~~~~~-~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~l~~~~~ 339 (368)
.|++++|||++.... ...+.+|..-| ++++| .|.+|++++.|++++||..++ ..+++.+.||.+.|.++..+++
T Consensus 365 ~Dnt~kVWDLR~r~~-ly~ipAH~nlVS~Vk~~p~~g~fL~TasyD~t~kiWs~~~--~~~~ksLaGHe~kV~s~Dis~d 441 (459)
T KOG0272|consen 365 SDNTCKVWDLRMRSE-LYTIPAHSNLVSQVKYSPQEGYFLVTASYDNTVKIWSTRT--WSPLKSLAGHEGKVISLDISPD 441 (459)
T ss_pred CCCcEEEeeeccccc-ceecccccchhhheEecccCCeEEEEcccCcceeeecCCC--cccchhhcCCccceEEEEeccC
Confidence 999999999998666 47888999888 55666 589999999999999995554 5899999999999999999999
Q ss_pred CeeeecCCcceEEEEEeeCCcccccccCC
Q 047325 340 RDSSSSTSSCAQRWIVYSGSLDKSDDDVH 368 (368)
Q Consensus 340 ~~~~~~~~~~~~~w~l~sg~~D~~v~i~h 368 (368)
++ .++|++.|+++|+|-
T Consensus 442 ~~------------~i~t~s~DRT~KLW~ 458 (459)
T KOG0272|consen 442 SQ------------AIATSSFDRTIKLWR 458 (459)
T ss_pred Cc------------eEEEeccCceeeecc
Confidence 99 789999999999993
No 3
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=100.00 E-value=3.2e-45 Score=274.14 Aligned_cols=285 Identities=22% Similarity=0.329 Sum_probs=244.7
Q ss_pred eeeeccCcCCcEEEEEecCC--EEEEccCCCcEEEEcCCc--ceecccCCCCCeeEEEEe--CCEEEEEeCCCeEEEEee
Q 047325 36 LIGSLVREEGHIYSLAASKD--LLYTGSDSKNIRVWKNLK--EFCGFKASSGLVKAIVIS--GEKIFTGHQDGKIRVWKI 109 (368)
Q Consensus 36 ~~~~~~~h~~~i~~~~~~~~--~l~s~~~dg~i~iw~~~~--~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~vw~~ 109 (368)
..++|+||.+.|.++.|.++ +|+++|.||.+.|||..+ ....++.....|..++|+ ++++++|+.|....||++
T Consensus 47 ~rr~LkGH~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~haipl~s~WVMtCA~sPSg~~VAcGGLdN~Csiy~l 126 (343)
T KOG0286|consen 47 TRRTLKGHLNKIYAMDWSTDSRRIVSASQDGKLIVWDSFTTNKVHAIPLPSSWVMTCAYSPSGNFVACGGLDNKCSIYPL 126 (343)
T ss_pred eEEEecccccceeeeEecCCcCeEEeeccCCeEEEEEcccccceeEEecCceeEEEEEECCCCCeEEecCcCceeEEEec
Confidence 34789999999999999866 999999999999999764 455566778889988887 899999999999999999
Q ss_pred cCCCccccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcCCCCEEEEEeCCCcEEEEEccCCeEE
Q 047325 110 SPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCGLLYTASWDRTFKVWRISDSKCL 189 (368)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~ 189 (368)
.+.+..... ...+.+.+|.+-+.|+.|.+| ..|++++.|.++.+||+++++.+
T Consensus 127 s~~d~~g~~--------------------------~v~r~l~gHtgylScC~f~dD-~~ilT~SGD~TCalWDie~g~~~ 179 (343)
T KOG0286|consen 127 STRDAEGNV--------------------------RVSRELAGHTGYLSCCRFLDD-NHILTGSGDMTCALWDIETGQQT 179 (343)
T ss_pred ccccccccc--------------------------eeeeeecCccceeEEEEEcCC-CceEecCCCceEEEEEcccceEE
Confidence 865321111 123345679999999999885 57889999999999999999999
Q ss_pred EEeecCCCceEEEEeCC-CC-eEEEEcCCCeEEEEEcCCCCCCcccccceeeccccccEEEEEEcCCCCEEEEecCCCcE
Q 047325 190 ESVSAHDDAVNSVVSSS-EG-LIFTGSADGTVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSSSRSIVYCGSSDGLV 267 (368)
Q Consensus 190 ~~~~~~~~~v~~~~~~~-~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i 267 (368)
..|.+|.+.|.++.++| ++ .+++|+.|+..++||+|.+ .+.+.+.+|+..|++++|.|+|.-+++|+.|++.
T Consensus 180 ~~f~GH~gDV~slsl~p~~~ntFvSg~cD~~aklWD~R~~------~c~qtF~ghesDINsv~ffP~G~afatGSDD~tc 253 (343)
T KOG0286|consen 180 QVFHGHTGDVMSLSLSPSDGNTFVSGGCDKSAKLWDVRSG------QCVQTFEGHESDINSVRFFPSGDAFATGSDDATC 253 (343)
T ss_pred EEecCCcccEEEEecCCCCCCeEEecccccceeeeeccCc------ceeEeecccccccceEEEccCCCeeeecCCCcee
Confidence 99999999999999999 55 9999999999999999987 4789999999999999999999999999999999
Q ss_pred EEEeCCCccccceeee---ccceEEEEEEeCCCEEEEeeCCCeEEEEecCCCceeeeEeeeccccCeeEEEEecCCeeee
Q 047325 268 NFWEREKQLSHGGVLK---GHKLAVLCLAAAGKLVFSGSADKTICVWRRDGAIHTCLSVLTGHTGPVKCLAVEEDRDSSS 344 (368)
Q Consensus 268 ~i~d~~~~~~~~~~~~---~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~ 344 (368)
++||++..+.+..... ......++|+..|++|++|..|.++.+||.-.. +.+..+.+|.+.|+++..+|||.
T Consensus 254 RlyDlRaD~~~a~ys~~~~~~gitSv~FS~SGRlLfagy~d~~c~vWDtlk~--e~vg~L~GHeNRvScl~~s~DG~--- 328 (343)
T KOG0286|consen 254 RLYDLRADQELAVYSHDSIICGITSVAFSKSGRLLFAGYDDFTCNVWDTLKG--ERVGVLAGHENRVSCLGVSPDGM--- 328 (343)
T ss_pred EEEeecCCcEEeeeccCcccCCceeEEEcccccEEEeeecCCceeEeecccc--ceEEEeeccCCeeEEEEECCCCc---
Confidence 9999998655532221 112233566778999999999999999976555 77888999999999999999999
Q ss_pred cCCcceEEEEEeeCCcccccccC
Q 047325 345 STSSCAQRWIVYSGSLDKSDDDV 367 (368)
Q Consensus 345 ~~~~~~~~w~l~sg~~D~~v~i~ 367 (368)
-++|||.|.++|||
T Consensus 329 ---------av~TgSWDs~lriW 342 (343)
T KOG0286|consen 329 ---------AVATGSWDSTLRIW 342 (343)
T ss_pred ---------EEEecchhHheeec
Confidence 79999999999999
No 4
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=100.00 E-value=1.7e-43 Score=263.27 Aligned_cols=277 Identities=23% Similarity=0.372 Sum_probs=227.0
Q ss_pred ceeeeccCcCCcEEEEEec---CCEEEEccCCCcEEEEcCCc-------ceecccCCCCCeeEEEEe--CCEEEEEeCCC
Q 047325 35 GLIGSLVREEGHIYSLAAS---KDLLYTGSDSKNIRVWKNLK-------EFCGFKASSGLVKAIVIS--GEKIFTGHQDG 102 (368)
Q Consensus 35 ~~~~~~~~h~~~i~~~~~~---~~~l~s~~~dg~i~iw~~~~-------~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg 102 (368)
.+..++.+|++.|..++.. ++.+++++.|.++.+|++.. ....+.+|...|..+..+ +++.++++.|+
T Consensus 6 ~l~~tl~gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~GHsH~v~dv~~s~dg~~alS~swD~ 85 (315)
T KOG0279|consen 6 VLRGTLEGHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDDIKYGVPVRRLTGHSHFVSDVVLSSDGNFALSASWDG 85 (315)
T ss_pred eeeeeecCCCceEEEEEeecCCCceEEEcccceEEEEEEeccCccccCceeeeeeccceEecceEEccCCceEEeccccc
Confidence 4567899999999999875 55999999999999998752 366789999999999887 89999999999
Q ss_pred eEEEEeecCCCccccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcCCCCEEEEEeCCCcEEEEE
Q 047325 103 KIRVWKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCGLLYTASWDRTFKVWR 182 (368)
Q Consensus 103 ~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd 182 (368)
++++||+.+++. .+.|.||...|.+++|++|...+++|+.|.+|++|+
T Consensus 86 ~lrlWDl~~g~~--------------------------------t~~f~GH~~dVlsva~s~dn~qivSGSrDkTiklwn 133 (315)
T KOG0279|consen 86 TLRLWDLATGES--------------------------------TRRFVGHTKDVLSVAFSTDNRQIVSGSRDKTIKLWN 133 (315)
T ss_pred eEEEEEecCCcE--------------------------------EEEEEecCCceEEEEecCCCceeecCCCcceeeeee
Confidence 999999998853 345667999999999999999999999999999999
Q ss_pred ccCCeEEEEeecC--CCceEEEEeCCCC---eEEEEcCCCeEEEEEcCCCCCCcccccceeeccccccEEEEEEcCCCCE
Q 047325 183 ISDSKCLESVSAH--DDAVNSVVSSSEG---LIFTGSADGTVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSSSRSI 257 (368)
Q Consensus 183 ~~~~~~~~~~~~~--~~~v~~~~~~~~~---~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 257 (368)
.... +..++..+ ...|.|+.|+|+. +|++++.|++|++||+++. +....+.+|.+.++.++++|||..
T Consensus 134 t~g~-ck~t~~~~~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~------~l~~~~~gh~~~v~t~~vSpDGsl 206 (315)
T KOG0279|consen 134 TLGV-CKYTIHEDSHREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNC------QLRTTFIGHSGYVNTVTVSPDGSL 206 (315)
T ss_pred eccc-EEEEEecCCCcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCc------chhhccccccccEEEEEECCCCCE
Confidence 8644 44444433 7889999999984 9999999999999999876 456778899999999999999999
Q ss_pred EEEecCCCcEEEEeCCCccccceeeeccceEE--EEEEeCCCEEEEeeCCCeEEEEecCCCceeeeEeee----cc----
Q 047325 258 VYCGSSDGLVNFWEREKQLSHGGVLKGHKLAV--LCLAAAGKLVFSGSADKTICVWRRDGAIHTCLSVLT----GH---- 327 (368)
Q Consensus 258 l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~----~h---- 327 (368)
.++|+.||.+.+||++.++.+. ..+|...| ++|+|+.-.|+.+. +..|+|||+++. ..+..++ +.
T Consensus 207 casGgkdg~~~LwdL~~~k~ly--sl~a~~~v~sl~fspnrywL~~at-~~sIkIwdl~~~--~~v~~l~~d~~g~s~~~ 281 (315)
T KOG0279|consen 207 CASGGKDGEAMLWDLNEGKNLY--SLEAFDIVNSLCFSPNRYWLCAAT-ATSIKIWDLESK--AVVEELKLDGIGPSSKA 281 (315)
T ss_pred EecCCCCceEEEEEccCCceeE--eccCCCeEeeEEecCCceeEeecc-CCceEEEeccch--hhhhhcccccccccccc
Confidence 9999999999999999887753 33444555 66666666666655 445999999876 3443332 11
Q ss_pred -ccCeeEEEEecCCeeeecCCcceEEEEEeeCCcccccccC
Q 047325 328 -TGPVKCLAVEEDRDSSSSTSSCAQRWIVYSGSLDKSDDDV 367 (368)
Q Consensus 328 -~~~v~~l~~~~~~~~~~~~~~~~~~w~l~sg~~D~~v~i~ 367 (368)
...-.+++|++||+ .|+.|-.|+.||+|
T Consensus 282 ~~~~clslaws~dG~------------tLf~g~td~~irv~ 310 (315)
T KOG0279|consen 282 GDPICLSLAWSADGQ------------TLFAGYTDNVIRVW 310 (315)
T ss_pred CCcEEEEEEEcCCCc------------EEEeeecCCcEEEE
Confidence 22356789999999 67788888888877
No 5
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=1.6e-44 Score=283.21 Aligned_cols=245 Identities=23% Similarity=0.357 Sum_probs=223.8
Q ss_pred cccCCCceeeeccCcCCcEEEEEecCC----EEEEccCCCcEEEEcCC--cceecccCCCCCeeEEEEe--CCEEEEEeC
Q 047325 29 ENLPQNGLIGSLVREEGHIYSLAASKD----LLYTGSDSKNIRVWKNL--KEFCGFKASSGLVKAIVIS--GEKIFTGHQ 100 (368)
Q Consensus 29 ~~~~~~~~~~~~~~h~~~i~~~~~~~~----~l~s~~~dg~i~iw~~~--~~~~~~~~~~~~v~~~~~~--~~~l~s~~~ 100 (368)
-+.++...+.+|.||.+.|.++.|+|. .+|||+.||++++|++. +.+..+.+|...|..++|+ |++|+|++.
T Consensus 202 W~~~~~~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e~~l~~l~gH~~RVs~VafHPsG~~L~Tasf 281 (459)
T KOG0272|consen 202 WSVPQCNLLQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQETPLQDLEGHLARVSRVAFHPSGKFLGTASF 281 (459)
T ss_pred eecCCcceeEEEeccccceeeEEEccCCCccceeeeccCCceeeeccCCCcchhhhhcchhhheeeeecCCCceeeeccc
Confidence 345667889999999999999999854 89999999999999987 4678899999999999998 999999999
Q ss_pred CCeEEEEeecCCCccccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcCCCCEEEEEeCCCcEEE
Q 047325 101 DGKIRVWKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCGLLYTASWDRTFKV 180 (368)
Q Consensus 101 dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i 180 (368)
|.+-++||++++....... ||...|.+++|++||.++++|+.|..-+|
T Consensus 282 D~tWRlWD~~tk~ElL~QE--------------------------------GHs~~v~~iaf~~DGSL~~tGGlD~~~Rv 329 (459)
T KOG0272|consen 282 DSTWRLWDLETKSELLLQE--------------------------------GHSKGVFSIAFQPDGSLAATGGLDSLGRV 329 (459)
T ss_pred ccchhhcccccchhhHhhc--------------------------------ccccccceeEecCCCceeeccCccchhhe
Confidence 9999999999988655443 49999999999999999999999999999
Q ss_pred EEccCCeEEEEeecCCCceEEEEeCCCC-eEEEEcCCCeEEEEEcCCCCCCcccccceeeccccccEEEEEEcC-CCCEE
Q 047325 181 WRISDSKCLESVSAHDDAVNSVVSSSEG-LIFTGSADGTVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSS-SRSIV 258 (368)
Q Consensus 181 wd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l 258 (368)
||+++++++..+.+|..+|.++.|+|+| .|++|+.|++++|||++... .+..+..|..-|+.++|+| .|.+|
T Consensus 330 WDlRtgr~im~L~gH~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~------~ly~ipAH~nlVS~Vk~~p~~g~fL 403 (459)
T KOG0272|consen 330 WDLRTGRCIMFLAGHIKEILSVAFSPNGYHLATGSSDNTCKVWDLRMRS------ELYTIPAHSNLVSQVKYSPQEGYFL 403 (459)
T ss_pred eecccCcEEEEecccccceeeEeECCCceEEeecCCCCcEEEeeecccc------cceecccccchhhheEecccCCeEE
Confidence 9999999999999999999999999999 99999999999999999763 4788899999999999999 78899
Q ss_pred EEecCCCcEEEEeCCCccccceeeeccceEEEE--EEeCCCEEEEeeCCCeEEEEe
Q 047325 259 YCGSSDGLVNFWEREKQLSHGGVLKGHKLAVLC--LAAAGKLVFSGSADKTICVWR 312 (368)
Q Consensus 259 ~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~~~~~dg~i~iw~ 312 (368)
++++.|+++++|..++..+. ..+.+|...|++ ++++++++++++.|.++++|.
T Consensus 404 ~TasyD~t~kiWs~~~~~~~-ksLaGHe~kV~s~Dis~d~~~i~t~s~DRT~KLW~ 458 (459)
T KOG0272|consen 404 VTASYDNTVKIWSTRTWSPL-KSLAGHEGKVISLDISPDSQAIATSSFDRTIKLWR 458 (459)
T ss_pred EEcccCcceeeecCCCcccc-hhhcCCccceEEEEeccCCceEEEeccCceeeecc
Confidence 99999999999999887655 788899999865 457999999999999999994
No 6
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1.1e-42 Score=267.96 Aligned_cols=287 Identities=21% Similarity=0.348 Sum_probs=255.3
Q ss_pred cccCCCceeeeccCcCCcEEEEEecCC--EEEEccCCCcEEEEcCCcc--eecccCCCCCeeEEEEe--CCEEEEEeCCC
Q 047325 29 ENLPQNGLIGSLVREEGHIYSLAASKD--LLYTGSDSKNIRVWKNLKE--FCGFKASSGLVKAIVIS--GEKIFTGHQDG 102 (368)
Q Consensus 29 ~~~~~~~~~~~~~~h~~~i~~~~~~~~--~l~s~~~dg~i~iw~~~~~--~~~~~~~~~~v~~~~~~--~~~l~s~~~dg 102 (368)
+-+|+..+...+.+|..+|+.+-|.|. ++++++.|++|++||..+. ...+++|...+..+.|+ |.+|++++.|=
T Consensus 93 ~wipRp~l~~~l~g~r~~vt~v~~hp~~~~v~~as~d~tikv~D~~tg~~e~~LrGHt~sv~di~~~a~Gk~l~tcSsDl 172 (406)
T KOG0295|consen 93 LWIPRPNLVQKLAGHRSSVTRVIFHPSEALVVSASEDATIKVFDTETGELERSLRGHTDSVFDISFDASGKYLATCSSDL 172 (406)
T ss_pred hcCCCCCchhhhhccccceeeeeeccCceEEEEecCCceEEEEEccchhhhhhhhccccceeEEEEecCccEEEecCCcc
Confidence 346777888889999999999999988 7888999999999998754 55789999999999998 89999999999
Q ss_pred eEEEEeecCCCccccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcCCCCEEEEEeCCCcEEEEE
Q 047325 103 KIRVWKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCGLLYTASWDRTFKVWR 182 (368)
Q Consensus 103 ~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd 182 (368)
.+++||+++...... .+.+|...|.++.|-|.|.++++++.|.+|+.|+
T Consensus 173 ~~~LWd~~~~~~c~k-------------------------------s~~gh~h~vS~V~f~P~gd~ilS~srD~tik~We 221 (406)
T KOG0295|consen 173 SAKLWDFDTFFRCIK-------------------------------SLIGHEHGVSSVFFLPLGDHILSCSRDNTIKAWE 221 (406)
T ss_pred chhheeHHHHHHHHH-------------------------------HhcCcccceeeEEEEecCCeeeecccccceeEEe
Confidence 999999986422111 2234899999999999999999999999999999
Q ss_pred ccCCeEEEEeecCCCceEEEEeCCCC-eEEEEcCCCeEEEEEcCCCCCCcccccceeeccccccEEEEEEcCC-------
Q 047325 183 ISDSKCLESVSAHDDAVNSVVSSSEG-LIFTGSADGTVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSSS------- 254 (368)
Q Consensus 183 ~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~------- 254 (368)
+.++-++.++.+|...|..++.+.|| ++++++.|.++++|-+.+. .+...+..|+.+|.+++|.|.
T Consensus 222 ~~tg~cv~t~~~h~ewvr~v~v~~DGti~As~s~dqtl~vW~~~t~------~~k~~lR~hEh~vEci~wap~~~~~~i~ 295 (406)
T KOG0295|consen 222 CDTGYCVKTFPGHSEWVRMVRVNQDGTIIASCSNDQTLRVWVVATK------QCKAELREHEHPVECIAWAPESSYPSIS 295 (406)
T ss_pred cccceeEEeccCchHhEEEEEecCCeeEEEecCCCceEEEEEeccc------hhhhhhhccccceEEEEecccccCcchh
Confidence 99999999999999999999999999 9999999999999999765 356778889999999999773
Q ss_pred --------CCEEEEecCCCcEEEEeCCCccccceeeeccceEEE--EEEeCCCEEEEeeCCCeEEEEecCCCceeeeEee
Q 047325 255 --------RSIVYCGSSDGLVNFWEREKQLSHGGVLKGHKLAVL--CLAAAGKLVFSGSADKTICVWRRDGAIHTCLSVL 324 (368)
Q Consensus 255 --------~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~ 324 (368)
++++.+++.|++|++||+.++.++ ..+.+|...|. +|+|.|+||+++.+|+++++||+.+. +++..+
T Consensus 296 ~at~~~~~~~~l~s~SrDktIk~wdv~tg~cL-~tL~ghdnwVr~~af~p~Gkyi~ScaDDktlrvwdl~~~--~cmk~~ 372 (406)
T KOG0295|consen 296 EATGSTNGGQVLGSGSRDKTIKIWDVSTGMCL-FTLVGHDNWVRGVAFSPGGKYILSCADDKTLRVWDLKNL--QCMKTL 372 (406)
T ss_pred hccCCCCCccEEEeecccceEEEEeccCCeEE-EEEecccceeeeeEEcCCCeEEEEEecCCcEEEEEeccc--eeeecc
Confidence 258999999999999999998776 67889999884 55667999999999999999999887 889999
Q ss_pred eccccCeeEEEEecCCeeeecCCcceEEEEEeeCCcccccccC
Q 047325 325 TGHTGPVKCLAVEEDRDSSSSTSSCAQRWIVYSGSLDKSDDDV 367 (368)
Q Consensus 325 ~~h~~~v~~l~~~~~~~~~~~~~~~~~~w~l~sg~~D~~v~i~ 367 (368)
..|..-|+++.|..+.. +++||+.|.++++|
T Consensus 373 ~ah~hfvt~lDfh~~~p------------~VvTGsVdqt~Kvw 403 (406)
T KOG0295|consen 373 EAHEHFVTSLDFHKTAP------------YVVTGSVDQTVKVW 403 (406)
T ss_pred CCCcceeEEEecCCCCc------------eEEeccccceeeee
Confidence 99999999999999998 79999999999998
No 7
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=100.00 E-value=1.2e-41 Score=249.42 Aligned_cols=262 Identities=21% Similarity=0.386 Sum_probs=217.5
Q ss_pred EEEEccCCCcEEEEcCCccee--cccCCCCCeeEEEEe--CCEEEEEeCCCeEEEEeecCCCccccccCCccccceeeee
Q 047325 56 LLYTGSDSKNIRVWKNLKEFC--GFKASSGLVKAIVIS--GEKIFTGHQDGKIRVWKISPKNQSVHKRAGTLPTLKDIFK 131 (368)
Q Consensus 56 ~l~s~~~dg~i~iw~~~~~~~--~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~ 131 (368)
+|+++|.|.+||+|...++++ +++...+.|+.+... +..|++++ ...||+||+++++..
T Consensus 12 iLvsA~YDhTIRfWqa~tG~C~rTiqh~dsqVNrLeiTpdk~~LAaa~-~qhvRlyD~~S~np~---------------- 74 (311)
T KOG0315|consen 12 ILVSAGYDHTIRFWQALTGICSRTIQHPDSQVNRLEITPDKKDLAAAG-NQHVRLYDLNSNNPN---------------- 74 (311)
T ss_pred EEEeccCcceeeeeehhcCeEEEEEecCccceeeEEEcCCcchhhhcc-CCeeEEEEccCCCCC----------------
Confidence 899999999999999987765 566678889999987 45566655 569999999988642
Q ss_pred ccCCCCceeEecccceeeeeecCCCEeEEEEcCCCCEEEEEeCCCcEEEEEccCCeEEEEeecCCCceEEEEeCCCC-eE
Q 047325 132 SSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCGLLYTASWDRTFKVWRISDSKCLESVSAHDDAVNSVVSSSEG-LI 210 (368)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l 210 (368)
+...+.+|++.|+++.|..+|+.+++|++||+++|||++...+.+.++ |..+|+++..+|+. .|
T Consensus 75 --------------Pv~t~e~h~kNVtaVgF~~dgrWMyTgseDgt~kIWdlR~~~~qR~~~-~~spVn~vvlhpnQteL 139 (311)
T KOG0315|consen 75 --------------PVATFEGHTKNVTAVGFQCDGRWMYTGSEDGTVKIWDLRSLSCQRNYQ-HNSPVNTVVLHPNQTEL 139 (311)
T ss_pred --------------ceeEEeccCCceEEEEEeecCeEEEecCCCceEEEEeccCcccchhcc-CCCCcceEEecCCcceE
Confidence 344566799999999999999999999999999999999976666665 67999999999998 99
Q ss_pred EEEcCCCeEEEEEcCCCCCCcccccceeeccccccEEEEEEcCCCCEEEEecCCCcEEEEeCCCc-----cccceeeecc
Q 047325 211 FTGSADGTVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSSSRSIVYCGSSDGLVNFWEREKQ-----LSHGGVLKGH 285 (368)
Q Consensus 211 ~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~-----~~~~~~~~~~ 285 (368)
++|..+|.|++||+....- ...........|.++...|+|.+++.+...|..++|++-+. ..+...++.|
T Consensus 140 is~dqsg~irvWDl~~~~c-----~~~liPe~~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah 214 (311)
T KOG0315|consen 140 ISGDQSGNIRVWDLGENSC-----THELIPEDDTSIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQAH 214 (311)
T ss_pred EeecCCCcEEEEEccCCcc-----ccccCCCCCcceeeEEEcCCCcEEEEecCCccEEEEEccCCCccccceEhhheecc
Confidence 9999999999999986532 11223344578999999999999999999999999998643 3344556777
Q ss_pred ceEE--EEEEeCCCEEEEeeCCCeEEEEecCCCceeeeEeeeccccCeeEEEEecCCeeeecCCcceEEEEEeeCCcccc
Q 047325 286 KLAV--LCLAAAGKLVFSGSADKTICVWRRDGAIHTCLSVLTGHTGPVKCLAVEEDRDSSSSTSSCAQRWIVYSGSLDKS 363 (368)
Q Consensus 286 ~~~~--~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~w~l~sg~~D~~ 363 (368)
...+ .-++||+++|++++.|.+++||+.+.. .+....+.+|...+++.+||.||+ +|+||+.|+.
T Consensus 215 ~~~il~C~lSPd~k~lat~ssdktv~iwn~~~~-~kle~~l~gh~rWvWdc~FS~dg~------------YlvTassd~~ 281 (311)
T KOG0315|consen 215 NGHILRCLLSPDVKYLATCSSDKTVKIWNTDDF-FKLELVLTGHQRWVWDCAFSADGE------------YLVTASSDHT 281 (311)
T ss_pred cceEEEEEECCCCcEEEeecCCceEEEEecCCc-eeeEEEeecCCceEEeeeeccCcc------------EEEecCCCCc
Confidence 7776 457899999999999999999998876 567778899999999999999999 5666666666
Q ss_pred cccC
Q 047325 364 DDDV 367 (368)
Q Consensus 364 v~i~ 367 (368)
+|+|
T Consensus 282 ~rlW 285 (311)
T KOG0315|consen 282 ARLW 285 (311)
T ss_pred eeec
Confidence 6666
No 8
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=4.9e-41 Score=249.15 Aligned_cols=283 Identities=22% Similarity=0.314 Sum_probs=237.5
Q ss_pred ceeeeccCcCCcEEEEEecCC---EEEEccCCCcEEEEcCCcc---ee---cccCCCCCeeEEEEe--CCEEEEEeCCCe
Q 047325 35 GLIGSLVREEGHIYSLAASKD---LLYTGSDSKNIRVWKNLKE---FC---GFKASSGLVKAIVIS--GEKIFTGHQDGK 103 (368)
Q Consensus 35 ~~~~~~~~h~~~i~~~~~~~~---~l~s~~~dg~i~iw~~~~~---~~---~~~~~~~~v~~~~~~--~~~l~s~~~dg~ 103 (368)
..+..+.+|+++|..+++++. .||||+.|+.||+|+.... .+ .-.+|...|.+++|+ |++|++|+.|.+
T Consensus 5 ~~~~~~~gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~~La~aSFD~t 84 (312)
T KOG0645|consen 5 ILEQKLSGHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGRYLASASFDAT 84 (312)
T ss_pred eeEEeecCCCCcEEEEEeccCCceEEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecCCCcEEEEeeccce
Confidence 346789999999999999866 8999999999999998731 11 124799999999997 999999999999
Q ss_pred EEEEeecCCCccccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcCCCCEEEEEeCCCcEEEEEc
Q 047325 104 IRVWKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCGLLYTASWDRTFKVWRI 183 (368)
Q Consensus 104 i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~ 183 (368)
+.||.-..++.. ....+.||.++|.|++|+++|++||+|+.|..|-||.+
T Consensus 85 ~~Iw~k~~~efe------------------------------cv~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~ 134 (312)
T KOG0645|consen 85 VVIWKKEDGEFE------------------------------CVATLEGHENEVKCVAWSASGNYLATCSRDKSVWIWEI 134 (312)
T ss_pred EEEeecCCCcee------------------------------EEeeeeccccceeEEEEcCCCCEEEEeeCCCeEEEEEe
Confidence 999987655421 13456789999999999999999999999999999998
Q ss_pred cC---CeEEEEeecCCCceEEEEeCCCC-eEEEEcCCCeEEEEEcCCCCCCcccccceeeccccccEEEEEEcCCCCEEE
Q 047325 184 SD---SKCLESVSAHDDAVNSVVSSSEG-LIFTGSADGTVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSSSRSIVY 259 (368)
Q Consensus 184 ~~---~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~ 259 (368)
.. .++...++.|...|..+.|+|.. +|++++.|.+|++|+-... ....+...+.+|...|.+++|+|.|..|+
T Consensus 135 deddEfec~aVL~~HtqDVK~V~WHPt~dlL~S~SYDnTIk~~~~~~d---ddW~c~~tl~g~~~TVW~~~F~~~G~rl~ 211 (312)
T KOG0645|consen 135 DEDDEFECIAVLQEHTQDVKHVIWHPTEDLLFSCSYDNTIKVYRDEDD---DDWECVQTLDGHENTVWSLAFDNIGSRLV 211 (312)
T ss_pred cCCCcEEEEeeeccccccccEEEEcCCcceeEEeccCCeEEEEeecCC---CCeeEEEEecCccceEEEEEecCCCceEE
Confidence 74 35788999999999999999987 9999999999999997642 45567889999999999999999999999
Q ss_pred EecCCCcEEEEeCCCccccceeeeccceEEEEEEeCCCEEEEeeCCCeEEEEecCCC----ceeeeE-eeeccccCeeEE
Q 047325 260 CGSSDGLVNFWEREKQLSHGGVLKGHKLAVLCLAAAGKLVFSGSADKTICVWRRDGA----IHTCLS-VLTGHTGPVKCL 334 (368)
Q Consensus 260 ~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~----~~~~~~-~~~~h~~~v~~l 334 (368)
+++.|++++||-.... ....|...++.+.++...|++++.|+.|++|.-... ....+. .-..|...|+++
T Consensus 212 s~sdD~tv~Iw~~~~~-----~~~~~sr~~Y~v~W~~~~IaS~ggD~~i~lf~~s~~~d~p~~~l~~~~~~aHe~dVNsV 286 (312)
T KOG0645|consen 212 SCSDDGTVSIWRLYTD-----LSGMHSRALYDVPWDNGVIASGGGDDAIRLFKESDSPDEPSWNLLAKKEGAHEVDVNSV 286 (312)
T ss_pred EecCCcceEeeeeccC-----cchhcccceEeeeecccceEeccCCCEEEEEEecCCCCCchHHHHHhhhcccccccceE
Confidence 9999999999986632 334567778888888889999999999999976432 112222 335689999999
Q ss_pred EEecC-CeeeecCCcceEEEEEeeCCcccccccC
Q 047325 335 AVEED-RDSSSSTSSCAQRWIVYSGSLDKSDDDV 367 (368)
Q Consensus 335 ~~~~~-~~~~~~~~~~~~~w~l~sg~~D~~v~i~ 367 (368)
+|+|. .. +|++|+.||.|++|
T Consensus 287 ~w~p~~~~------------~L~s~~DDG~v~~W 308 (312)
T KOG0645|consen 287 QWNPKVSN------------RLASGGDDGIVNFW 308 (312)
T ss_pred EEcCCCCC------------ceeecCCCceEEEE
Confidence 99995 34 68999999999998
No 9
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=100.00 E-value=1.8e-41 Score=260.95 Aligned_cols=284 Identities=20% Similarity=0.346 Sum_probs=245.7
Q ss_pred CCCceeeeccCcCCcEEEEEecCC--EEEEccCCCcEEEEcCCcc--eecccCCCCCeeEEEEe--CCEEEEEeCCCeEE
Q 047325 32 PQNGLIGSLVREEGHIYSLAASKD--LLYTGSDSKNIRVWKNLKE--FCGFKASSGLVKAIVIS--GEKIFTGHQDGKIR 105 (368)
Q Consensus 32 ~~~~~~~~~~~h~~~i~~~~~~~~--~l~s~~~dg~i~iw~~~~~--~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~ 105 (368)
.+-++.+.+.+|.+.|.|++++|. .|+||+.|++|+|||+.+. ..++.+|...|..++++ ..||++++.|+.|+
T Consensus 139 apwKl~rVi~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~LkltltGhi~~vr~vavS~rHpYlFs~gedk~VK 218 (460)
T KOG0285|consen 139 APWKLYRVISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQLKLTLTGHIETVRGVAVSKRHPYLFSAGEDKQVK 218 (460)
T ss_pred CcceehhhhhhccceEEEEeeCCCceeEEecCCCceeEEEEcccCeEEEeecchhheeeeeeecccCceEEEecCCCeeE
Confidence 445667789999999999999854 9999999999999999865 45678999999999999 66999999999999
Q ss_pred EEeecCCCccccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcCCCCEEEEEeCCCcEEEEEccC
Q 047325 106 VWKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCGLLYTASWDRTFKVWRISD 185 (368)
Q Consensus 106 vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~ 185 (368)
.||++.++.+.. +.||-+.|.|++.+|.-..|++|+.|.++++||+++
T Consensus 219 CwDLe~nkvIR~--------------------------------YhGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRt 266 (460)
T KOG0285|consen 219 CWDLEYNKVIRH--------------------------------YHGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRT 266 (460)
T ss_pred EEechhhhhHHH--------------------------------hccccceeEEEeccccceeEEecCCcceEEEeeecc
Confidence 999998875433 445999999999999999999999999999999999
Q ss_pred CeEEEEeecCCCceEEEEeCCCC-eEEEEcCCCeEEEEEcCCCCCCcccccceeeccccccEEEEEEcCCCCEEEEecCC
Q 047325 186 SKCLESVSAHDDAVNSVVSSSEG-LIFTGSADGTVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSSSRSIVYCGSSD 264 (368)
Q Consensus 186 ~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d 264 (368)
...+..+.+|..+|..+.+.|-+ .+++|+.|++|++||++.+. ....+..|...+.+++.+|....+++++.|
T Consensus 267 r~~V~~l~GH~~~V~~V~~~~~dpqvit~S~D~tvrlWDl~agk------t~~tlt~hkksvral~lhP~e~~fASas~d 340 (460)
T KOG0285|consen 267 RASVHVLSGHTNPVASVMCQPTDPQVITGSHDSTVRLWDLRAGK------TMITLTHHKKSVRALCLHPKENLFASASPD 340 (460)
T ss_pred cceEEEecCCCCcceeEEeecCCCceEEecCCceEEEeeeccCc------eeEeeecccceeeEEecCCchhhhhccCCc
Confidence 99999999999999999998866 99999999999999999873 467788899999999999999999999887
Q ss_pred CcEEEEeCCCccccceeeeccceEEEEEEeC-CCEEEEeeCCCeEEEEecCCCc-eeeeEeee-----ccccCeeEEEEe
Q 047325 265 GLVNFWEREKQLSHGGVLKGHKLAVLCLAAA-GKLVFSGSADKTICVWRRDGAI-HTCLSVLT-----GHTGPVKCLAVE 337 (368)
Q Consensus 265 g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~~~dg~i~iw~~~~~~-~~~~~~~~-----~h~~~v~~l~~~ 337 (368)
. |+-|++..+..+.. +.+|..-+.+++.+ ..++++|+++|.+.+||.+++- .+..++.. ..+..|.+.+|.
T Consensus 341 n-ik~w~~p~g~f~~n-lsgh~~iintl~~nsD~v~~~G~dng~~~fwdwksg~nyQ~~~t~vqpGSl~sEagI~as~fD 418 (460)
T KOG0285|consen 341 N-IKQWKLPEGEFLQN-LSGHNAIINTLSVNSDGVLVSGGDNGSIMFWDWKSGHNYQRGQTIVQPGSLESEAGIFASCFD 418 (460)
T ss_pred c-ceeccCCccchhhc-cccccceeeeeeeccCceEEEcCCceEEEEEecCcCcccccccccccCCccccccceeEEeec
Confidence 5 99999998877754 88999999999874 6799999999999999987651 11121111 123468999999
Q ss_pred cCCeeeecCCcceEEEEEeeCCcccccccC
Q 047325 338 EDRDSSSSTSSCAQRWIVYSGSLDKSDDDV 367 (368)
Q Consensus 338 ~~~~~~~~~~~~~~~w~l~sg~~D~~v~i~ 367 (368)
..|. .|+||..|++|++|
T Consensus 419 ktg~------------rlit~eadKtIk~~ 436 (460)
T KOG0285|consen 419 KTGS------------RLITGEADKTIKMY 436 (460)
T ss_pred ccCc------------eEEeccCCcceEEE
Confidence 9998 79999999999988
No 10
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=100.00 E-value=4.2e-43 Score=279.75 Aligned_cols=285 Identities=15% Similarity=0.269 Sum_probs=246.0
Q ss_pred CCceeeeccCcCCcEEEEEecCC---EEEEccCCCcEEEEcCC---cceecccCCCCCeeEEEEe--CCEEEEEeCCCeE
Q 047325 33 QNGLIGSLVREEGHIYSLAASKD---LLYTGSDSKNIRVWKNL---KEFCGFKASSGLVKAIVIS--GEKIFTGHQDGKI 104 (368)
Q Consensus 33 ~~~~~~~~~~h~~~i~~~~~~~~---~l~s~~~dg~i~iw~~~---~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i 104 (368)
+...+.++.||+..|.++.|.+. +|++++.|+.|+||++- ..+++|.+|..+|.+++|+ |..+++++.|+.|
T Consensus 203 Pkk~~~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD~~l 282 (503)
T KOG0282|consen 203 PKKLSHNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRTFKGHRKPVRDASFNNCGTSFLSASFDRFL 282 (503)
T ss_pred cHhheeeccCCccccchhhhccceeeEEEecCCCceEEEEEEecCcceehhhhcchhhhhhhhccccCCeeeeeecceee
Confidence 56778899999999999999763 99999999999999975 4578999999999999999 8899999999999
Q ss_pred EEEeecCCCccccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcCCC-CEEEEEeCCCcEEEEEc
Q 047325 105 RVWKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDC-GLLYTASWDRTFKVWRI 183 (368)
Q Consensus 105 ~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~iwd~ 183 (368)
++||++++++..... ....++|+.|+|++ +.|++|+.|+.|+.||+
T Consensus 283 KlwDtETG~~~~~f~---------------------------------~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDi 329 (503)
T KOG0282|consen 283 KLWDTETGQVLSRFH---------------------------------LDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDI 329 (503)
T ss_pred eeeccccceEEEEEe---------------------------------cCCCceeeecCCCCCcEEEEecCCCcEEEEec
Confidence 999999998765554 34567899999988 89999999999999999
Q ss_pred cCCeEEEEeecCCCceEEEEeCCCC-eEEEEcCCCeEEEEEcCCCCCCcccccceeeccccccEEEEEEcCCCCEEEEec
Q 047325 184 SDSKCLESVSAHDDAVNSVVSSSEG-LIFTGSADGTVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSSSRSIVYCGS 262 (368)
Q Consensus 184 ~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~ 262 (368)
++++.++.+..|-+.|..+.|-++| .+++.+.|+.+++|+.+.+-. .............++..+|+++++++-+
T Consensus 330 Rs~kvvqeYd~hLg~i~~i~F~~~g~rFissSDdks~riWe~~~~v~-----ik~i~~~~~hsmP~~~~~P~~~~~~aQs 404 (503)
T KOG0282|consen 330 RSGKVVQEYDRHLGAILDITFVDEGRRFISSSDDKSVRIWENRIPVP-----IKNIADPEMHTMPCLTLHPNGKWFAAQS 404 (503)
T ss_pred cchHHHHHHHhhhhheeeeEEccCCceEeeeccCccEEEEEcCCCcc-----chhhcchhhccCcceecCCCCCeehhhc
Confidence 9999999999999999999999999 999999999999999986522 2222233445577899999999999999
Q ss_pred CCCcEEEEeCCCccc--cceeeeccceE----EEEEEeCCCEEEEeeCCCeEEEEecCCCceeeeEeeeccccCeeEEEE
Q 047325 263 SDGLVNFWEREKQLS--HGGVLKGHKLA----VLCLAAAGKLVFSGSADKTICVWRRDGAIHTCLSVLTGHTGPVKCLAV 336 (368)
Q Consensus 263 ~dg~i~i~d~~~~~~--~~~~~~~~~~~----~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~l~~ 336 (368)
.|+.|.+|.+..... ....+.+|... -+.++|||++|++|+.||.+.+||..+. +.+..+++|.+++..+.|
T Consensus 405 ~dN~i~ifs~~~~~r~nkkK~feGh~vaGys~~v~fSpDG~~l~SGdsdG~v~~wdwkt~--kl~~~lkah~~~ci~v~w 482 (503)
T KOG0282|consen 405 MDNYIAIFSTVPPFRLNKKKRFEGHSVAGYSCQVDFSPDGRTLCSGDSDGKVNFWDWKTT--KLVSKLKAHDQPCIGVDW 482 (503)
T ss_pred cCceEEEEecccccccCHhhhhcceeccCceeeEEEcCCCCeEEeecCCccEEEeechhh--hhhhccccCCcceEEEEe
Confidence 999999999764322 22455566543 2678899999999999999999998876 778889999999999999
Q ss_pred ecCCeeeecCCcceEEEEEeeCCcccccccCC
Q 047325 337 EEDRDSSSSTSSCAQRWIVYSGSLDKSDDDVH 368 (368)
Q Consensus 337 ~~~~~~~~~~~~~~~~w~l~sg~~D~~v~i~h 368 (368)
+|.... .++||+.||.|++|+
T Consensus 483 HP~e~S-----------kvat~~w~G~Ikiwd 503 (503)
T KOG0282|consen 483 HPVEPS-----------KVATCGWDGLIKIWD 503 (503)
T ss_pred cCCCcc-----------eeEecccCceeEecC
Confidence 998764 799999999999996
No 11
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=100.00 E-value=2.6e-42 Score=269.70 Aligned_cols=273 Identities=23% Similarity=0.291 Sum_probs=235.6
Q ss_pred cCCcEEEEEecCC--EEEEccCCCcEEEEcCCcc--eecccCCCCCeeEEEEe--CCEEEEEeCCCeEEEEeecCCCccc
Q 047325 43 EEGHIYSLAASKD--LLYTGSDSKNIRVWKNLKE--FCGFKASSGLVKAIVIS--GEKIFTGHQDGKIRVWKISPKNQSV 116 (368)
Q Consensus 43 h~~~i~~~~~~~~--~l~s~~~dg~i~iw~~~~~--~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~vw~~~~~~~~~ 116 (368)
-+..|..+.|.|+ .|++|+..|...+|+...- ...++.|..+|.++.|+ +.++++|+.+|.|++|+..-.....
T Consensus 95 vkc~V~~v~WtPeGRRLltgs~SGEFtLWNg~~fnFEtilQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnmnnVk~ 174 (464)
T KOG0284|consen 95 VKCPVNVVRWTPEGRRLLTGSQSGEFTLWNGTSFNFETILQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPNMNNVKI 174 (464)
T ss_pred cccceeeEEEcCCCceeEeecccccEEEecCceeeHHHHhhhhcccceeEEEccCCCEEEEcCCCceEEecccchhhhHH
Confidence 3456888888755 9999999999999997532 33567899999999998 8899999999999999987654322
Q ss_pred cccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcCCCCEEEEEeCCCcEEEEEccCCeEEEEeecCC
Q 047325 117 HKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCGLLYTASWDRTFKVWRISDSKCLESVSAHD 196 (368)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~ 196 (368)
.... |...|++++|+|+...|++|+.||+|+|||....+....+.+|.
T Consensus 175 ~~ah--------------------------------h~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~kee~vL~GHg 222 (464)
T KOG0284|consen 175 IQAH--------------------------------HAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMPKEERVLRGHG 222 (464)
T ss_pred hhHh--------------------------------hhhhhheeccCCCCceeEEecCCCeEEEEeccCCchhheeccCC
Confidence 2221 66999999999999999999999999999999999989999999
Q ss_pred CceEEEEeCCCC-eEEEEcCCCeEEEEEcCCCCCCcccccceeeccccccEEEEEEcCCCCEEEEecCCCcEEEEeCCCc
Q 047325 197 DAVNSVVSSSEG-LIFTGSADGTVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSSSRSIVYCGSSDGLVNFWEREKQ 275 (368)
Q Consensus 197 ~~v~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~ 275 (368)
-.|.+++|+|.. ++++|+.|..|++||.+++ .++..+..|+..|..+.|+|++++|++++.|..+++||+++.
T Consensus 223 wdVksvdWHP~kgLiasgskDnlVKlWDprSg------~cl~tlh~HKntVl~~~f~~n~N~Llt~skD~~~kv~DiR~m 296 (464)
T KOG0284|consen 223 WDVKSVDWHPTKGLIASGSKDNLVKLWDPRSG------SCLATLHGHKNTVLAVKFNPNGNWLLTGSKDQSCKVFDIRTM 296 (464)
T ss_pred CCcceeccCCccceeEEccCCceeEeecCCCc------chhhhhhhccceEEEEEEcCCCCeeEEccCCceEEEEehhHh
Confidence 999999999987 9999999999999999987 468888999999999999999999999999999999999965
Q ss_pred cccceeeeccceEEEEEE--e-CCCEEEEeeCCCeEEEEecCCCceeeeEeeeccccCeeEEEEecCCeeeecCCcceEE
Q 047325 276 LSHGGVLKGHKLAVLCLA--A-AGKLVFSGSADKTICVWRRDGAIHTCLSVLTGHTGPVKCLAVEEDRDSSSSTSSCAQR 352 (368)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~--~-~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~ 352 (368)
+.+ ..+++|...+.++. | ...+|.+|+.||.|..|.+.... .....-.+|...|++++|+|-|.
T Consensus 297 kEl-~~~r~Hkkdv~~~~WhP~~~~lftsgg~Dgsvvh~~v~~~~-p~~~i~~AHd~~iwsl~~hPlGh----------- 363 (464)
T KOG0284|consen 297 KEL-FTYRGHKKDVTSLTWHPLNESLFTSGGSDGSVVHWVVGLEE-PLGEIPPAHDGEIWSLAYHPLGH----------- 363 (464)
T ss_pred HHH-HHhhcchhhheeeccccccccceeeccCCCceEEEeccccc-cccCCCcccccceeeeeccccce-----------
Confidence 554 67888999887774 4 57899999999999999987431 22233357999999999999999
Q ss_pred EEEeeCCcccccccC
Q 047325 353 WIVYSGSLDKSDDDV 367 (368)
Q Consensus 353 w~l~sg~~D~~v~i~ 367 (368)
+|++|+.|+++|.|
T Consensus 364 -il~tgsnd~t~rfw 377 (464)
T KOG0284|consen 364 -ILATGSNDRTVRFW 377 (464)
T ss_pred -eEeecCCCcceeee
Confidence 78899999999987
No 12
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=8e-42 Score=265.02 Aligned_cols=240 Identities=23% Similarity=0.375 Sum_probs=203.9
Q ss_pred eecccCCCCCeeEEEEe--CCEEEEEeCCCeEEEEeecCCCccccccCCccccceeeeeccCCCCceeEecccceeeeee
Q 047325 75 FCGFKASSGLVKAIVIS--GEKIFTGHQDGKIRVWKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIR 152 (368)
Q Consensus 75 ~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (368)
...+.+|.++|.++.|+ +.+|++|+.|.++|+||+.+..+.. +..+
T Consensus 108 ssS~~GH~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~TeTp~~--------------------------------t~Kg 155 (480)
T KOG0271|consen 108 SSSIAGHGEAVLSVQFSPTGSRLVTGSGDTTVRLWDLDTETPLF--------------------------------TCKG 155 (480)
T ss_pred ccccCCCCCcEEEEEecCCCceEEecCCCceEEeeccCCCCcce--------------------------------eecC
Confidence 34578999999999998 7899999999999999999876433 3345
Q ss_pred cCCCEeEEEEcCCCCEEEEEeCCCcEEEEEccCCeEE-EEeecCCCceEEEEeCCC-----C-eEEEEcCCCeEEEEEcC
Q 047325 153 HSDAVSCMSLDQDCGLLYTASWDRTFKVWRISDSKCL-ESVSAHDDAVNSVVSSSE-----G-LIFTGSADGTVKVWKRE 225 (368)
Q Consensus 153 ~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~-~~~~~~~~~v~~~~~~~~-----~-~l~~~~~dg~i~i~d~~ 225 (368)
|...|.|++|+||++.|++|+.||+|++||..+|+++ ..+.+|...|++++|.|- . +|++++.||.++|||+.
T Consensus 156 H~~WVlcvawsPDgk~iASG~~dg~I~lwdpktg~~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~ 235 (480)
T KOG0271|consen 156 HKNWVLCVAWSPDGKKIASGSKDGSIRLWDPKTGQQIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTK 235 (480)
T ss_pred CccEEEEEEECCCcchhhccccCCeEEEecCCCCCcccccccCcccceeEEeecccccCCCccceecccCCCCEEEEEcc
Confidence 9999999999999999999999999999999998765 678999999999999763 2 89999999999999997
Q ss_pred CCCCCcccccceeeccccccEEEEEEcCCCCEEEEecCCCcEEEEeCCCccccceeeeccceEEEEEEeC----------
Q 047325 226 QHGKGTKHSLAQTLLKQECAVTALVVSSSRSIVYCGSSDGLVNFWEREKQLSHGGVLKGHKLAVLCLAAA---------- 295 (368)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~---------- 295 (368)
.+ .++..+.+|..+|+|++|--+ .++++|+.|++|++|+...+... ..+.+|...|..++.+
T Consensus 236 ~~------~~~~~lsgHT~~VTCvrwGG~-gliySgS~DrtIkvw~a~dG~~~-r~lkGHahwvN~lalsTdy~LRtgaf 307 (480)
T KOG0271|consen 236 LG------TCVRTLSGHTASVTCVRWGGE-GLIYSGSQDRTIKVWRALDGKLC-RELKGHAHWVNHLALSTDYVLRTGAF 307 (480)
T ss_pred Cc------eEEEEeccCccceEEEEEcCC-ceEEecCCCceEEEEEccchhHH-Hhhcccchheeeeeccchhhhhcccc
Confidence 65 468889999999999999754 58999999999999999887655 6778887777544322
Q ss_pred ---C-------------------------CEEEEeeCCCeEEEEecCCCceeeeEeeeccccCeeEEEEecCCeeeecCC
Q 047325 296 ---G-------------------------KLVFSGSADKTICVWRRDGAIHTCLSVLTGHTGPVKCLAVEEDRDSSSSTS 347 (368)
Q Consensus 296 ---~-------------------------~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~ 347 (368)
+ +.|++|++|.++.+|+-... .+++..+.+|...|+.+.|+||++
T Consensus 308 ~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~-kkpi~rmtgHq~lVn~V~fSPd~r------ 380 (480)
T KOG0271|consen 308 DHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSDDFTLFLWNPFKS-KKPITRMTGHQALVNHVSFSPDGR------ 380 (480)
T ss_pred ccccccCCChHHHHHHHHHHHHHhhccCcceeEEecCCceEEEeccccc-ccchhhhhchhhheeeEEECCCcc------
Confidence 3 35999999999999976443 367888899999999999999999
Q ss_pred cceEEEEEeeCCcccccccC
Q 047325 348 SCAQRWIVYSGSLDKSDDDV 367 (368)
Q Consensus 348 ~~~~~w~l~sg~~D~~v~i~ 367 (368)
+++++|.|+.||+|
T Consensus 381 ------~IASaSFDkSVkLW 394 (480)
T KOG0271|consen 381 ------YIASASFDKSVKLW 394 (480)
T ss_pred ------EEEEeecccceeee
Confidence 56667777777766
No 13
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=100.00 E-value=6.3e-41 Score=252.04 Aligned_cols=280 Identities=23% Similarity=0.361 Sum_probs=237.2
Q ss_pred CceeeeccCcCCcEEEEEecCC--EEEEccCCCcEEEEcCC---cceecccCCCCCeeEEEEe--CCEEEEEeCCCeEEE
Q 047325 34 NGLIGSLVREEGHIYSLAASKD--LLYTGSDSKNIRVWKNL---KEFCGFKASSGLVKAIVIS--GEKIFTGHQDGKIRV 106 (368)
Q Consensus 34 ~~~~~~~~~h~~~i~~~~~~~~--~l~s~~~dg~i~iw~~~---~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~v 106 (368)
..++..+.+|++.|+.+.|+|+ .||||+.|..|.+|++. +....+++|.+.|..+.|. ++.+++++.|.+++.
T Consensus 37 ~ap~m~l~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdceN~~~lkgHsgAVM~l~~~~d~s~i~S~gtDk~v~~ 116 (338)
T KOG0265|consen 37 QAPIMLLPGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDCENFWVLKGHSGAVMELHGMRDGSHILSCGTDKTVRG 116 (338)
T ss_pred cchhhhcCCCcceEEEEEECCCCCeEeecCCcceEEEEeccccccceeeeccccceeEeeeeccCCCEEEEecCCceEEE
Confidence 3455678999999999999876 99999999999999975 3456778999999999998 889999999999999
Q ss_pred EeecCCCccccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcCCC-CEEEEEeCCCcEEEEEccC
Q 047325 107 WKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDC-GLLYTASWDRTFKVWRISD 185 (368)
Q Consensus 107 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~iwd~~~ 185 (368)
||.++++.....+. |.+-|+.+.-+.-| .++.+++.|+++++||+++
T Consensus 117 wD~~tG~~~rk~k~--------------------------------h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~ 164 (338)
T KOG0265|consen 117 WDAETGKRIRKHKG--------------------------------HTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRK 164 (338)
T ss_pred Eecccceeeehhcc--------------------------------ccceeeecCccccCCeEEEecCCCceEEEEeecc
Confidence 99999986655443 88889988854433 4677888999999999999
Q ss_pred CeEEEEeecCCCceEEEEeCCCC-eEEEEcCCCeEEEEEcCCCCCCcccccceeeccccccEEEEEEcCCCCEEEEecCC
Q 047325 186 SKCLESVSAHDDAVNSVVSSSEG-LIFTGSADGTVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSSSRSIVYCGSSD 264 (368)
Q Consensus 186 ~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d 264 (368)
...++++. ..-.++++.|...+ .+++|+-|+.|++||++.+. ....+.+|...|+.+..+|+|.++.+-+.|
T Consensus 165 k~~~~t~~-~kyqltAv~f~d~s~qv~sggIdn~ikvWd~r~~d------~~~~lsGh~DtIt~lsls~~gs~llsnsMd 237 (338)
T KOG0265|consen 165 KEAIKTFE-NKYQLTAVGFKDTSDQVISGGIDNDIKVWDLRKND------GLYTLSGHADTITGLSLSRYGSFLLSNSMD 237 (338)
T ss_pred cchhhccc-cceeEEEEEecccccceeeccccCceeeeccccCc------ceEEeecccCceeeEEeccCCCcccccccc
Confidence 99888875 45678999999988 99999999999999998763 578889999999999999999999999999
Q ss_pred CcEEEEeCCCc---cccceeeeccce------EEEEEEeCCCEEEEeeCCCeEEEEecCCCceeeeEeeeccccCeeEEE
Q 047325 265 GLVNFWEREKQ---LSHGGVLKGHKL------AVLCLAAAGKLVFSGSADKTICVWRRDGAIHTCLSVLTGHTGPVKCLA 335 (368)
Q Consensus 265 g~i~i~d~~~~---~~~~~~~~~~~~------~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~l~ 335 (368)
.++++||++.. +.....+.+|.- --.+++|++..+.+|+.|..+++||.... ..+..+.+|.+.|++++
T Consensus 238 ~tvrvwd~rp~~p~~R~v~if~g~~hnfeknlL~cswsp~~~~i~ags~dr~vyvwd~~~r--~~lyklpGh~gsvn~~~ 315 (338)
T KOG0265|consen 238 NTVRVWDVRPFAPSQRCVKIFQGHIHNFEKNLLKCSWSPNGTKITAGSADRFVYVWDTTSR--RILYKLPGHYGSVNEVD 315 (338)
T ss_pred ceEEEEEecccCCCCceEEEeecchhhhhhhcceeeccCCCCccccccccceEEEeecccc--cEEEEcCCcceeEEEee
Confidence 99999998842 232344444432 22677889999999999999999987665 78899999999999999
Q ss_pred EecCCeeeecCCcceEEEEEeeCCccccccc
Q 047325 336 VEEDRDSSSSTSSCAQRWIVYSGSLDKSDDD 366 (368)
Q Consensus 336 ~~~~~~~~~~~~~~~~~w~l~sg~~D~~v~i 366 (368)
|+|... .+.+++.|++|.+
T Consensus 316 Fhp~e~------------iils~~sdk~i~l 334 (338)
T KOG0265|consen 316 FHPTEP------------IILSCSSDKTIYL 334 (338)
T ss_pred ecCCCc------------EEEEeccCceeEe
Confidence 999999 6777777777653
No 14
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=100.00 E-value=2.8e-40 Score=262.88 Aligned_cols=274 Identities=22% Similarity=0.310 Sum_probs=235.4
Q ss_pred ccCcCCcEEEEEecCC---EEEEccCCCcEEEEcCCc------ceeccc----------CCCCCeeEEEEe--CCEEEEE
Q 047325 40 LVREEGHIYSLAASKD---LLYTGSDSKNIRVWKNLK------EFCGFK----------ASSGLVKAIVIS--GEKIFTG 98 (368)
Q Consensus 40 ~~~h~~~i~~~~~~~~---~l~s~~~dg~i~iw~~~~------~~~~~~----------~~~~~v~~~~~~--~~~l~s~ 98 (368)
+..|+.+|.+.+|+|. ++++|+.|-+.++|++.. ....++ ..+..|++++|+ |..|++|
T Consensus 174 vl~~~~~V~~~~WnP~~~~llasg~~~s~ari~~l~e~~~~~~~q~~lrh~~~~~~~s~~~nkdVT~L~Wn~~G~~LatG 253 (524)
T KOG0273|consen 174 VLRHESEVFICAWNPLRDGLLASGSGDSTARIWNLLENSNIGSTQLVLRHCIREGGKSVPSNKDVTSLDWNNDGTLLATG 253 (524)
T ss_pred eccCCCceEEEecCchhhhhhhccCCccceeeeeehhhccccchhhhhhhhhhhhcccCCccCCcceEEecCCCCeEEEe
Confidence 3349999999999975 889999999999999764 111111 124679999999 9999999
Q ss_pred eCCCeEEEEeecCCCccccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcCCCCEEEEEeCCCcE
Q 047325 99 HQDGKIRVWKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCGLLYTASWDRTF 178 (368)
Q Consensus 99 ~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i 178 (368)
+.||.+++|+....... .+..|+++|.++.|+..|.+|++++.|+++
T Consensus 254 ~~~G~~riw~~~G~l~~---------------------------------tl~~HkgPI~slKWnk~G~yilS~~vD~tt 300 (524)
T KOG0273|consen 254 SEDGEARIWNKDGNLIS---------------------------------TLGQHKGPIFSLKWNKKGTYILSGGVDGTT 300 (524)
T ss_pred ecCcEEEEEecCchhhh---------------------------------hhhccCCceEEEEEcCCCCEEEeccCCccE
Confidence 99999999998765321 222399999999999999999999999999
Q ss_pred EEEEccCCeEEEEeecCCCceEEEEeCCCCeEEEEcCCCeEEEEEcCCCCCCcccccceeeccccccEEEEEEcCCCCEE
Q 047325 179 KVWRISDSKCLESVSAHDDAVNSVVSSSEGLIFTGSADGTVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSSSRSIV 258 (368)
Q Consensus 179 ~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l 258 (368)
.+||..+++..+.+..|..+-..+.|-.+..+++.+.|+.|+++.+... .+..++.+|.+.|.++.|.|.+.+|
T Consensus 301 ilwd~~~g~~~q~f~~~s~~~lDVdW~~~~~F~ts~td~~i~V~kv~~~------~P~~t~~GH~g~V~alk~n~tg~LL 374 (524)
T KOG0273|consen 301 ILWDAHTGTVKQQFEFHSAPALDVDWQSNDEFATSSTDGCIHVCKVGED------RPVKTFIGHHGEVNALKWNPTGSLL 374 (524)
T ss_pred EEEeccCceEEEeeeeccCCccceEEecCceEeecCCCceEEEEEecCC------CcceeeecccCceEEEEECCCCceE
Confidence 9999999999999999998878899998889999999999999999754 4678889999999999999999999
Q ss_pred EEecCCCcEEEEeCCCccccceeeeccceEEEEEEe-----------CCCEEEEeeCCCeEEEEecCCCceeeeEeeecc
Q 047325 259 YCGSSDGLVNFWEREKQLSHGGVLKGHKLAVLCLAA-----------AGKLVFSGSADKTICVWRRDGAIHTCLSVLTGH 327 (368)
Q Consensus 259 ~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h 327 (368)
++++.|++++||........ ..+..|...|+.+.+ .+..+++++.|++|++||+..+ .++..+..|
T Consensus 375 aS~SdD~TlkiWs~~~~~~~-~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~g--v~i~~f~kH 451 (524)
T KOG0273|consen 375 ASCSDDGTLKIWSMGQSNSV-HDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESG--VPIHTLMKH 451 (524)
T ss_pred EEecCCCeeEeeecCCCcch-hhhhhhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCC--ceeEeeccC
Confidence 99999999999998765444 567788887766653 2568999999999999999887 888999999
Q ss_pred ccCeeEEEEecCCeeeecCCcceEEEEEeeCCcccccccC
Q 047325 328 TGPVKCLAVEEDRDSSSSTSSCAQRWIVYSGSLDKSDDDV 367 (368)
Q Consensus 328 ~~~v~~l~~~~~~~~~~~~~~~~~~w~l~sg~~D~~v~i~ 367 (368)
..+|.+++|+|+|+ ++++|+.||.|.+|
T Consensus 452 ~~pVysvafS~~g~------------ylAsGs~dg~V~iw 479 (524)
T KOG0273|consen 452 QEPVYSVAFSPNGR------------YLASGSLDGCVHIW 479 (524)
T ss_pred CCceEEEEecCCCc------------EEEecCCCCeeEec
Confidence 99999999999999 67888888888877
No 15
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=100.00 E-value=9.1e-40 Score=239.61 Aligned_cols=271 Identities=18% Similarity=0.369 Sum_probs=233.9
Q ss_pred cCCCceeeeccCcCCcEEEEEecCC--EEEEccCCCcEEEEcCC----cceecccCCCCCeeEEEEe--CCEEEEEeCCC
Q 047325 31 LPQNGLIGSLVREEGHIYSLAASKD--LLYTGSDSKNIRVWKNL----KEFCGFKASSGLVKAIVIS--GEKIFTGHQDG 102 (368)
Q Consensus 31 ~~~~~~~~~~~~h~~~i~~~~~~~~--~l~s~~~dg~i~iw~~~----~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg 102 (368)
...+....+++...+.|+.|...++ .||+|+. -.||+||+. .++..+.+|+..|+++.|. |+.+++|++||
T Consensus 27 a~tG~C~rTiqh~dsqVNrLeiTpdk~~LAaa~~-qhvRlyD~~S~np~Pv~t~e~h~kNVtaVgF~~dgrWMyTgseDg 105 (311)
T KOG0315|consen 27 ALTGICSRTIQHPDSQVNRLEITPDKKDLAAAGN-QHVRLYDLNSNNPNPVATFEGHTKNVTAVGFQCDGRWMYTGSEDG 105 (311)
T ss_pred hhcCeEEEEEecCccceeeEEEcCCcchhhhccC-CeeEEEEccCCCCCceeEEeccCCceEEEEEeecCeEEEecCCCc
Confidence 3456777888888888999998766 7776665 679999986 3678899999999999998 89999999999
Q ss_pred eEEEEeecCCCccccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcCCCCEEEEEeCCCcEEEEE
Q 047325 103 KIRVWKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCGLLYTASWDRTFKVWR 182 (368)
Q Consensus 103 ~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd 182 (368)
+++|||++......... |..+|+++..+|+...|++|..+|.|++||
T Consensus 106 t~kIWdlR~~~~qR~~~---------------------------------~~spVn~vvlhpnQteLis~dqsg~irvWD 152 (311)
T KOG0315|consen 106 TVKIWDLRSLSCQRNYQ---------------------------------HNSPVNTVVLHPNQTELISGDQSGNIRVWD 152 (311)
T ss_pred eEEEEeccCcccchhcc---------------------------------CCCCcceEEecCCcceEEeecCCCcEEEEE
Confidence 99999999855433332 789999999999999999999999999999
Q ss_pred ccCCeEEEEee-cCCCceEEEEeCCCC-eEEEEcCCCeEEEEEcCCCCCCcccccceeeccccccEEEEEEcCCCCEEEE
Q 047325 183 ISDSKCLESVS-AHDDAVNSVVSSSEG-LIFTGSADGTVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSSSRSIVYC 260 (368)
Q Consensus 183 ~~~~~~~~~~~-~~~~~v~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~ 260 (368)
+....+...+- ....+|.++...|+| +++.+...|..++|++-.........++.++..|.+.+..+.++|++++|++
T Consensus 153 l~~~~c~~~liPe~~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~k~lat 232 (311)
T KOG0315|consen 153 LGENSCTHELIPEDDTSIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSPDVKYLAT 232 (311)
T ss_pred ccCCccccccCCCCCcceeeEEEcCCCcEEEEecCCccEEEEEccCCCccccceEhhheecccceEEEEEECCCCcEEEe
Confidence 99887766553 455789999999999 8999999999999999876666677788889999999999999999999999
Q ss_pred ecCCCcEEEEeCCCccccceeeeccceEE--EEEEeCCCEEEEeeCCCeEEEEecCCCceeeeEeeeccccCeeEEEEe
Q 047325 261 GSSDGLVNFWEREKQLSHGGVLKGHKLAV--LCLAAAGKLVFSGSADKTICVWRRDGAIHTCLSVLTGHTGPVKCLAVE 337 (368)
Q Consensus 261 ~~~dg~i~i~d~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~l~~~ 337 (368)
++.|.+++||+.+........+.+|...+ ..|+.|++||++|+.|+.+++|++..+ +.+..+.+|..+..+++..
T Consensus 233 ~ssdktv~iwn~~~~~kle~~l~gh~rWvWdc~FS~dg~YlvTassd~~~rlW~~~~~--k~v~qy~gh~K~~vc~~ln 309 (311)
T KOG0315|consen 233 CSSDKTVKIWNTDDFFKLELVLTGHQRWVWDCAFSADGEYLVTASSDHTARLWDLSAG--KEVRQYQGHHKAAVCVALN 309 (311)
T ss_pred ecCCceEEEEecCCceeeEEEeecCCceEEeeeeccCccEEEecCCCCceeecccccC--ceeeecCCcccccEEEEee
Confidence 99999999999998766667788897776 677789999999999999999999887 7788899999998888764
No 16
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=100.00 E-value=7.3e-42 Score=262.43 Aligned_cols=268 Identities=26% Similarity=0.449 Sum_probs=228.2
Q ss_pred CCcEEEEEecCCEEEEccCCCcEEEEcCCcc--eecccCCCCCeeEEEEeCCEEEEEeCCCeEEEEeecCCCccccccCC
Q 047325 44 EGHIYSLAASKDLLYTGSDSKNIRVWKNLKE--FCGFKASSGLVKAIVISGEKIFTGHQDGKIRVWKISPKNQSVHKRAG 121 (368)
Q Consensus 44 ~~~i~~~~~~~~~l~s~~~dg~i~iw~~~~~--~~~~~~~~~~v~~~~~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~ 121 (368)
...|+|+.++.+.+++|..|.+|+|||.... ...+.+|++.|.|+.|+...+++|+.|.+|++||++++++...
T Consensus 197 skgVYClQYDD~kiVSGlrDnTikiWD~n~~~c~~~L~GHtGSVLCLqyd~rviisGSSDsTvrvWDv~tge~l~t---- 272 (499)
T KOG0281|consen 197 SKGVYCLQYDDEKIVSGLRDNTIKIWDKNSLECLKILTGHTGSVLCLQYDERVIVSGSSDSTVRVWDVNTGEPLNT---- 272 (499)
T ss_pred CCceEEEEecchhhhcccccCceEEeccccHHHHHhhhcCCCcEEeeeccceEEEecCCCceEEEEeccCCchhhH----
Confidence 4669999999999999999999999998754 5678899999999999999999999999999999999986443
Q ss_pred ccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcCCCCEEEEEeCCCcEEEEEccCCe---EEEEeecCCCc
Q 047325 122 TLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCGLLYTASWDRTFKVWRISDSK---CLESVSAHDDA 198 (368)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~---~~~~~~~~~~~ 198 (368)
+.+|.+.|..+.|+. .++++++.|.+|.+||+.+.. +...+.+|...
T Consensus 273 ----------------------------lihHceaVLhlrf~n--g~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAa 322 (499)
T KOG0281|consen 273 ----------------------------LIHHCEAVLHLRFSN--GYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAA 322 (499)
T ss_pred ----------------------------HhhhcceeEEEEEeC--CEEEEecCCceeEEEeccCchHHHHHHHHhhhhhh
Confidence 334999999999975 499999999999999998754 33567799999
Q ss_pred eEEEEeCCCCeEEEEcCCCeEEEEEcCCCCCCcccccceeeccccccEEEEEEcCCCCEEEEecCCCcEEEEeCCCcccc
Q 047325 199 VNSVVSSSEGLIFTGSADGTVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSSSRSIVYCGSSDGLVNFWEREKQLSH 278 (368)
Q Consensus 199 v~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~ 278 (368)
|+.+.|... ++++++.|.+|++|++.+. ..++.+.+|+..|.|+.+ .++++++|++|.+|++||++.+..+
T Consensus 323 VNvVdfd~k-yIVsASgDRTikvW~~st~------efvRtl~gHkRGIAClQY--r~rlvVSGSSDntIRlwdi~~G~cL 393 (499)
T KOG0281|consen 323 VNVVDFDDK-YIVSASGDRTIKVWSTSTC------EFVRTLNGHKRGIACLQY--RDRLVVSGSSDNTIRLWDIECGACL 393 (499)
T ss_pred eeeeccccc-eEEEecCCceEEEEeccce------eeehhhhcccccceehhc--cCeEEEecCCCceEEEEeccccHHH
Confidence 999999755 9999999999999999876 468889999999999988 5899999999999999999998777
Q ss_pred ceeeeccceEEEEEEeCCCEEEEeeCCCeEEEEecCCCcee-------eeEeeeccccCeeEEEEecCCeeeec-CCcce
Q 047325 279 GGVLKGHKLAVLCLAAAGKLVFSGSADKTICVWRRDGAIHT-------CLSVLTGHTGPVKCLAVEEDRDSSSS-TSSCA 350 (368)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~-------~~~~~~~h~~~v~~l~~~~~~~~~~~-~~~~~ 350 (368)
..+.+|..-+.|+.+|.+.+++|+.||+|++||+...... ++..+..|++.|..+.|..- +.+++ -+..+
T Consensus 394 -RvLeGHEeLvRciRFd~krIVSGaYDGkikvWdl~aaldpra~~~~~Cl~~lv~hsgRVFrLQFD~f-qIvsssHddtI 471 (499)
T KOG0281|consen 394 -RVLEGHEELVRCIRFDNKRIVSGAYDGKIKVWDLQAALDPRAPASTLCLRTLVEHSGRVFRLQFDEF-QIISSSHDDTI 471 (499)
T ss_pred -HHHhchHHhhhheeecCceeeeccccceEEEEecccccCCcccccchHHHhhhhccceeEEEeecce-EEEeccCCCeE
Confidence 7889999999999999999999999999999999765333 56677789999999999643 22222 23335
Q ss_pred EEEEEe
Q 047325 351 QRWIVY 356 (368)
Q Consensus 351 ~~w~l~ 356 (368)
-+|.+.
T Consensus 472 LiWdFl 477 (499)
T KOG0281|consen 472 LIWDFL 477 (499)
T ss_pred EEEEcC
Confidence 555543
No 17
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=100.00 E-value=4.2e-38 Score=253.82 Aligned_cols=319 Identities=17% Similarity=0.257 Sum_probs=249.7
Q ss_pred cCCCceeeeccCcCCcEEEEEecCC--EEEEccCCCcEEEEcCCc--ceeccc---CCCCCeeEEEEe--CCEEEEEeCC
Q 047325 31 LPQNGLIGSLVREEGHIYSLAASKD--LLYTGSDSKNIRVWKNLK--EFCGFK---ASSGLVKAIVIS--GEKIFTGHQD 101 (368)
Q Consensus 31 ~~~~~~~~~~~~h~~~i~~~~~~~~--~l~s~~~dg~i~iw~~~~--~~~~~~---~~~~~v~~~~~~--~~~l~s~~~d 101 (368)
=|+.++..++..|..-|.|+.|+|+ +++|++.||+|.+||-.+ .+..+. +|.+.|.+++|+ +..+++++.|
T Consensus 177 GPPFKFk~s~r~HskFV~~VRysPDG~~Fat~gsDgki~iyDGktge~vg~l~~~~aHkGsIfalsWsPDs~~~~T~SaD 256 (603)
T KOG0318|consen 177 GPPFKFKSSFREHSKFVNCVRYSPDGSRFATAGSDGKIYIYDGKTGEKVGELEDSDAHKGSIFALSWSPDSTQFLTVSAD 256 (603)
T ss_pred CCCeeeeecccccccceeeEEECCCCCeEEEecCCccEEEEcCCCccEEEEecCCCCccccEEEEEECCCCceEEEecCC
Confidence 4677888899999999999999876 999999999999999653 344444 899999999998 7799999999
Q ss_pred CeEEEEeecCCCccccccCCccccceeeeeccCCCCcee-----------Ee-cccceeeeeecCCCEeEEEEcCCCCEE
Q 047325 102 GKIRVWKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYI-----------EV-RRHRTALWIRHSDAVSCMSLDQDCGLL 169 (368)
Q Consensus 102 g~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~-~~~~~~~~~~~~~~v~~~~~~~~~~~l 169 (368)
.+++|||+.+.+.......... ........-.....++ .. ......+..||...|+++..+|++++|
T Consensus 257 kt~KIWdVs~~slv~t~~~~~~-v~dqqvG~lWqkd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~~i 335 (603)
T KOG0318|consen 257 KTIKIWDVSTNSLVSTWPMGST-VEDQQVGCLWQKDHLITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSPDGKTI 335 (603)
T ss_pred ceEEEEEeeccceEEEeecCCc-hhceEEEEEEeCCeEEEEEcCcEEEEecccCCChhheecccccceeEEEEcCCCCEE
Confidence 9999999999876655544433 1111111111111111 11 122456778999999999999999999
Q ss_pred EEEeCCCcEEEEEccCCeEE-----------E--------------------Ee--------------------------
Q 047325 170 YTASWDRTFKVWRISDSKCL-----------E--------------------SV-------------------------- 192 (368)
Q Consensus 170 ~~~~~d~~i~iwd~~~~~~~-----------~--------------------~~-------------------------- 192 (368)
++|+.||.|.-||..++..- . .+
T Consensus 336 ~SgsyDG~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~~~~~~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~~lav~~ 415 (603)
T KOG0318|consen 336 YSGSYDGHINSWDSGSGTSDRLAGKGHTNQIKGMAASESGELFTIGWDDTLRVISLKDNGYTKSEVVKLGSQPKGLAVLS 415 (603)
T ss_pred EeeccCceEEEEecCCccccccccccccceEEEEeecCCCcEEEEecCCeEEEEecccCcccccceeecCCCceeEEEcC
Confidence 99999999999998664210 0 00
Q ss_pred ----------------ecC--------CCceEEEEeCCCC-eEEEEcCCCeEEEEEcCCCCCCcccccceeeccccccEE
Q 047325 193 ----------------SAH--------DDAVNSVVSSSEG-LIFTGSADGTVKVWKREQHGKGTKHSLAQTLLKQECAVT 247 (368)
Q Consensus 193 ----------------~~~--------~~~v~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~i~ 247 (368)
+.+ .-...+++++|++ .+++|+.|+.|++|.+..... ........|.++|+
T Consensus 416 d~~~avv~~~~~iv~l~~~~~~~~~~~~y~~s~vAv~~~~~~vaVGG~Dgkvhvysl~g~~l----~ee~~~~~h~a~iT 491 (603)
T KOG0318|consen 416 DGGTAVVACISDIVLLQDQTKVSSIPIGYESSAVAVSPDGSEVAVGGQDGKVHVYSLSGDEL----KEEAKLLEHRAAIT 491 (603)
T ss_pred CCCEEEEEecCcEEEEecCCcceeeccccccceEEEcCCCCEEEEecccceEEEEEecCCcc----cceeeeecccCCce
Confidence 000 0123467788888 999999999999999986532 23445678999999
Q ss_pred EEEEcCCCCEEEEecCCCcEEEEeCCCccccceeeeccceEEEEEE--eCCCEEEEeeCCCeEEEEecCCCceeeeEeee
Q 047325 248 ALVVSSSRSIVYCGSSDGLVNFWEREKQLSHGGVLKGHKLAVLCLA--AAGKLVFSGSADKTICVWRRDGAIHTCLSVLT 325 (368)
Q Consensus 248 ~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~ 325 (368)
+++++||+.+|++|...+.+.+||..+.+.......-|...|.|++ |+..++|+|+-|-.|.||+++.+... +....
T Consensus 492 ~vaySpd~~yla~~Da~rkvv~yd~~s~~~~~~~w~FHtakI~~~aWsP~n~~vATGSlDt~Viiysv~kP~~~-i~ikn 570 (603)
T KOG0318|consen 492 DVAYSPDGAYLAAGDASRKVVLYDVASREVKTNRWAFHTAKINCVAWSPNNKLVATGSLDTNVIIYSVKKPAKH-IIIKN 570 (603)
T ss_pred EEEECCCCcEEEEeccCCcEEEEEcccCceecceeeeeeeeEEEEEeCCCceEEEeccccceEEEEEccChhhh-eEecc
Confidence 9999999999999999999999999988776666667888886655 67899999999999999999876434 66677
Q ss_pred ccccCeeEEEEecCCeeeecCCcceEEEEEeeCCcccccccCC
Q 047325 326 GHTGPVKCLAVEEDRDSSSSTSSCAQRWIVYSGSLDKSDDDVH 368 (368)
Q Consensus 326 ~h~~~v~~l~~~~~~~~~~~~~~~~~~w~l~sg~~D~~v~i~h 368 (368)
+|...|+.+.|-.+.. +++.+.|..||+||
T Consensus 571 AH~~gVn~v~wlde~t-------------vvSsG~Da~iK~W~ 600 (603)
T KOG0318|consen 571 AHLGGVNSVAWLDEST-------------VVSSGQDANIKVWN 600 (603)
T ss_pred ccccCceeEEEecCce-------------EEeccCcceeEEec
Confidence 8999999999988875 78889999999997
No 18
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=100.00 E-value=6.1e-39 Score=239.01 Aligned_cols=253 Identities=21% Similarity=0.393 Sum_probs=208.2
Q ss_pred CccccccccCCCceeeeccCcCCcEEEEEec--CCEEEEccCCCcEEEEcCCc--ceecccCCCCCeeEEEEe--CCEEE
Q 047325 23 GWSQFEENLPQNGLIGSLVREEGHIYSLAAS--KDLLYTGSDSKNIRVWKNLK--EFCGFKASSGLVKAIVIS--GEKIF 96 (368)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~--~~~l~s~~~dg~i~iw~~~~--~~~~~~~~~~~v~~~~~~--~~~l~ 96 (368)
.|.....+.+-+..++.+.||+..|..+..+ +++.++++.|+++|+||+.. ..+.|.+|...|.+++|+ +..++
T Consensus 42 ~W~L~~dd~~~G~~~r~~~GHsH~v~dv~~s~dg~~alS~swD~~lrlWDl~~g~~t~~f~GH~~dVlsva~s~dn~qiv 121 (315)
T KOG0279|consen 42 VWKLTSDDIKYGVPVRRLTGHSHFVSDVVLSSDGNFALSASWDGTLRLWDLATGESTRRFVGHTKDVLSVAFSTDNRQIV 121 (315)
T ss_pred EEEeccCccccCceeeeeeccceEecceEEccCCceEEeccccceEEEEEecCCcEEEEEEecCCceEEEEecCCCceee
Confidence 3777777788889999999999999999876 55999999999999999985 466789999999999998 67999
Q ss_pred EEeCCCeEEEEeecCCCccccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcCC--CCEEEEEeC
Q 047325 97 TGHQDGKIRVWKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQD--CGLLYTASW 174 (368)
Q Consensus 97 s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~ 174 (368)
+|+.|.+|++|+............ ++.+.|.|+.|+|+ ..+|++++.
T Consensus 122 SGSrDkTiklwnt~g~ck~t~~~~-------------------------------~~~~WVscvrfsP~~~~p~Ivs~s~ 170 (315)
T KOG0279|consen 122 SGSRDKTIKLWNTLGVCKYTIHED-------------------------------SHREWVSCVRFSPNESNPIIVSASW 170 (315)
T ss_pred cCCCcceeeeeeecccEEEEEecC-------------------------------CCcCcEEEEEEcCCCCCcEEEEccC
Confidence 999999999999876543222211 14789999999997 789999999
Q ss_pred CCcEEEEEccCCeEEEEeecCCCceEEEEeCCCC-eEEEEcCCCeEEEEEcCCCCCCcccccceeeccccccEEEEEEcC
Q 047325 175 DRTFKVWRISDSKCLESVSAHDDAVNSVVSSSEG-LIFTGSADGTVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSS 253 (368)
Q Consensus 175 d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 253 (368)
|++|++||+++.+....+.+|.+.++.++++||| ++++|+.||.+.+||++.... + ....+...|.+++|+|
T Consensus 171 DktvKvWnl~~~~l~~~~~gh~~~v~t~~vSpDGslcasGgkdg~~~LwdL~~~k~------l-ysl~a~~~v~sl~fsp 243 (315)
T KOG0279|consen 171 DKTVKVWNLRNCQLRTTFIGHSGYVNTVTVSPDGSLCASGGKDGEAMLWDLNEGKN------L-YSLEAFDIVNSLCFSP 243 (315)
T ss_pred CceEEEEccCCcchhhccccccccEEEEEECCCCCEEecCCCCceEEEEEccCCce------e-EeccCCCeEeeEEecC
Confidence 9999999999999999999999999999999999 999999999999999987632 2 3346778899999999
Q ss_pred CCCEEEEecCCCcEEEEeCCCccccceeee---cc-----ceE--EEEEEeCCCEEEEeeCCCeEEEEecC
Q 047325 254 SRSIVYCGSSDGLVNFWEREKQLSHGGVLK---GH-----KLA--VLCLAAAGKLVFSGSADKTICVWRRD 314 (368)
Q Consensus 254 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~---~~-----~~~--~~~~~~~~~~l~~~~~dg~i~iw~~~ 314 (368)
+...|+.+. +..|+|||++++........ +. ... .++++.||..|++|-.|+.|++|.+.
T Consensus 244 nrywL~~at-~~sIkIwdl~~~~~v~~l~~d~~g~s~~~~~~~clslaws~dG~tLf~g~td~~irv~qv~ 313 (315)
T KOG0279|consen 244 NRYWLCAAT-ATSIKIWDLESKAVVEELKLDGIGPSSKAGDPICLSLAWSADGQTLFAGYTDNVIRVWQVA 313 (315)
T ss_pred CceeEeecc-CCceEEEeccchhhhhhccccccccccccCCcEEEEEEEcCCCcEEEeeecCCcEEEEEee
Confidence 876666654 45599999997654422111 11 112 24555689999999999999999764
No 19
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=100.00 E-value=6.4e-40 Score=276.55 Aligned_cols=266 Identities=24% Similarity=0.364 Sum_probs=214.9
Q ss_pred CCCCCeeEEEEe--CCEEEEEeCCCeEEEEeecCCCccccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCE
Q 047325 80 ASSGLVKAIVIS--GEKIFTGHQDGKIRVWKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAV 157 (368)
Q Consensus 80 ~~~~~v~~~~~~--~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 157 (368)
.-...++|..|+ +..||.|..|..|++|.+...+.............. ...........-.........+.||.++|
T Consensus 376 nt~~~v~ca~fSddssmlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d-~~sad~~~~~~D~~~~~~~~~L~GH~GPV 454 (707)
T KOG0263|consen 376 NTYQGVTCAEFSDDSSMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNID-TESADVDVDMLDDDSSGTSRTLYGHSGPV 454 (707)
T ss_pred EcCCcceeEeecCCcchhhccccccEEEEEecchhhhccccchhhhcccc-ccccchhhhhccccCCceeEEeecCCCce
Confidence 334567888887 568888889999999999865322211111111110 00000011111122233445688999999
Q ss_pred eEEEEcCCCCEEEEEeCCCcEEEEEccCCeEEEEeecCCCceEEEEeCCCC-eEEEEcCCCeEEEEEcCCCCCCcccccc
Q 047325 158 SCMSLDQDCGLLYTASWDRTFKVWRISDSKCLESVSAHDDAVNSVVSSSEG-LIFTGSADGTVKVWKREQHGKGTKHSLA 236 (368)
Q Consensus 158 ~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~ 236 (368)
....|+|+.++|++++.|+++++|.+.+..++..+++|..+|.++.|+|.| ++++++.|++.++|..... .+.
T Consensus 455 yg~sFsPd~rfLlScSED~svRLWsl~t~s~~V~y~GH~~PVwdV~F~P~GyYFatas~D~tArLWs~d~~------~Pl 528 (707)
T KOG0263|consen 455 YGCSFSPDRRFLLSCSEDSSVRLWSLDTWSCLVIYKGHLAPVWDVQFAPRGYYFATASHDQTARLWSTDHN------KPL 528 (707)
T ss_pred eeeeecccccceeeccCCcceeeeecccceeEEEecCCCcceeeEEecCCceEEEecCCCceeeeeecccC------Cch
Confidence 999999999999999999999999999999999999999999999999999 9999999999999998764 468
Q ss_pred eeeccccccEEEEEEcCCCCEEEEecCCCcEEEEeCCCccccceeeeccceEE--EEEEeCCCEEEEeeCCCeEEEEecC
Q 047325 237 QTLLKQECAVTALVVSSSRSIVYCGSSDGLVNFWEREKQLSHGGVLKGHKLAV--LCLAAAGKLVFSGSADKTICVWRRD 314 (368)
Q Consensus 237 ~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~~~dg~i~iw~~~ 314 (368)
+.+.+|-+.|.|+.|+|+.+++++|+.|.+|++||..++... +.+.+|..+| ++++|+|++|++|+.||.|.+||+.
T Consensus 529 RifaghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~V-RiF~GH~~~V~al~~Sp~Gr~LaSg~ed~~I~iWDl~ 607 (707)
T KOG0263|consen 529 RIFAGHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNSV-RIFTGHKGPVTALAFSPCGRYLASGDEDGLIKIWDLA 607 (707)
T ss_pred hhhcccccccceEEECCcccccccCCCCceEEEEEcCCCcEE-EEecCCCCceEEEEEcCCCceEeecccCCcEEEEEcC
Confidence 888999999999999999999999999999999999998775 7788999888 5567899999999999999999998
Q ss_pred CCceeeeEeeeccccCeeEEEEecCCeeeecCCcceEEEEEeeCCcccccccC
Q 047325 315 GAIHTCLSVLTGHTGPVKCLAVEEDRDSSSSTSSCAQRWIVYSGSLDKSDDDV 367 (368)
Q Consensus 315 ~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~w~l~sg~~D~~v~i~ 367 (368)
++ ..+..+.+|.+.|.+|.|+.+|. .|++||.|.+|++|
T Consensus 608 ~~--~~v~~l~~Ht~ti~SlsFS~dg~------------vLasgg~DnsV~lW 646 (707)
T KOG0263|consen 608 NG--SLVKQLKGHTGTIYSLSFSRDGN------------VLASGGADNSVRLW 646 (707)
T ss_pred CC--cchhhhhcccCceeEEEEecCCC------------EEEecCCCCeEEEE
Confidence 87 78889999999999999999999 56666666666665
No 20
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=2.4e-39 Score=253.66 Aligned_cols=281 Identities=21% Similarity=0.314 Sum_probs=234.5
Q ss_pred CceeeeccCcCCcEEEEEecC--CEEEEccCCCcEEEEcCC-----cceecccCCCCCeeEEEEe--CCEEEEEeCCCeE
Q 047325 34 NGLIGSLVREEGHIYSLAASK--DLLYTGSDSKNIRVWKNL-----KEFCGFKASSGLVKAIVIS--GEKIFTGHQDGKI 104 (368)
Q Consensus 34 ~~~~~~~~~h~~~i~~~~~~~--~~l~s~~~dg~i~iw~~~-----~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i 104 (368)
.+..+.+..|++.|+-+.|++ .+|||++.|.+..+|++. +...++.+|..+|..+.|+ .++|++|+.|..+
T Consensus 214 ~qt~qil~~htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPDdryLlaCg~~e~~ 293 (519)
T KOG0293|consen 214 SQTWQILQDHTDEVWFLQFSHNGKYLASASKDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPDDRYLLACGFDEVL 293 (519)
T ss_pred chhhhhHhhCCCcEEEEEEcCCCeeEeeccCCceEEEEEEecCcceeeeeeeecccCceEEEEECCCCCeEEecCchHhe
Confidence 344567889999999999974 499999999999999864 2255788999999999999 7799999999999
Q ss_pred EEEeecCCCccccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcCCCCEEEEEeCCCcEEEEEcc
Q 047325 105 RVWKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCGLLYTASWDRTFKVWRIS 184 (368)
Q Consensus 105 ~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~ 184 (368)
.+||..++........+ +...+.+.+|.||+..+++|+.|+.|..||+.
T Consensus 294 ~lwDv~tgd~~~~y~~~-------------------------------~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlD 342 (519)
T KOG0293|consen 294 SLWDVDTGDLRHLYPSG-------------------------------LGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLD 342 (519)
T ss_pred eeccCCcchhhhhcccC-------------------------------cCCCcceeEEccCCceeEecCCCCcEEEecCC
Confidence 99999999865544432 56789999999999999999999999999985
Q ss_pred CCeEEEEeecC-CCceEEEEeCCCC-eEEEEcCCCeEEEEEcCCCCCCcccccceeeccccccEEEEEEcCCCCEEEEec
Q 047325 185 DSKCLESVSAH-DDAVNSVVSSSEG-LIFTGSADGTVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSSSRSIVYCGS 262 (368)
Q Consensus 185 ~~~~~~~~~~~-~~~v~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~ 262 (368)
|..+...++- ...|.+++..+|| ++++.+.|..|++++.... ....+...+.+|++++.+.+++++++.-
T Consensus 343 -gn~~~~W~gvr~~~v~dlait~Dgk~vl~v~~d~~i~l~~~e~~-------~dr~lise~~~its~~iS~d~k~~LvnL 414 (519)
T KOG0293|consen 343 -GNILGNWEGVRDPKVHDLAITYDGKYVLLVTVDKKIRLYNREAR-------VDRGLISEEQPITSFSISKDGKLALVNL 414 (519)
T ss_pred -cchhhcccccccceeEEEEEcCCCcEEEEEecccceeeechhhh-------hhhccccccCceeEEEEcCCCcEEEEEc
Confidence 4555555543 3569999999999 8888889999999998754 2233455677899999999999999999
Q ss_pred CCCcEEEEeCCCccccceeeeccceEE----EEEEe-CCCEEEEeeCCCeEEEEecCCCceeeeEeeeccccCeeEEEEe
Q 047325 263 SDGLVNFWEREKQLSHGGVLKGHKLAV----LCLAA-AGKLVFSGSADKTICVWRRDGAIHTCLSVLTGHTGPVKCLAVE 337 (368)
Q Consensus 263 ~dg~i~i~d~~~~~~~~~~~~~~~~~~----~~~~~-~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~l~~~ 337 (368)
.+..+++||++....+ ..+.+|...- .||.. +..++++|++|+.|+||+..++ +++..+.||...|++++|+
T Consensus 415 ~~qei~LWDl~e~~lv-~kY~Ghkq~~fiIrSCFgg~~~~fiaSGSED~kvyIWhr~sg--kll~~LsGHs~~vNcVswN 491 (519)
T KOG0293|consen 415 QDQEIHLWDLEENKLV-RKYFGHKQGHFIIRSCFGGGNDKFIASGSEDSKVYIWHRISG--KLLAVLSGHSKTVNCVSWN 491 (519)
T ss_pred ccCeeEEeecchhhHH-HHhhcccccceEEEeccCCCCcceEEecCCCceEEEEEccCC--ceeEeecCCcceeeEEecC
Confidence 9999999999965544 5556665443 33333 4689999999999999988776 8899999999999999999
Q ss_pred cCCeeeecCCcceEEEEEeeCCcccccccC
Q 047325 338 EDRDSSSSTSSCAQRWIVYSGSLDKSDDDV 367 (368)
Q Consensus 338 ~~~~~~~~~~~~~~~w~l~sg~~D~~v~i~ 367 (368)
|.... .+|+||+||+||||
T Consensus 492 P~~p~-----------m~ASasDDgtIRIW 510 (519)
T KOG0293|consen 492 PADPE-----------MFASASDDGTIRIW 510 (519)
T ss_pred CCCHH-----------HhhccCCCCeEEEe
Confidence 98874 78999999999999
No 21
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=100.00 E-value=8.3e-39 Score=269.86 Aligned_cols=267 Identities=22% Similarity=0.332 Sum_probs=227.3
Q ss_pred eeeeccCcCCcEEEEEecCC--EEEEccCCCcEEEEcCCc---------------------------------ceecccC
Q 047325 36 LIGSLVREEGHIYSLAASKD--LLYTGSDSKNIRVWKNLK---------------------------------EFCGFKA 80 (368)
Q Consensus 36 ~~~~~~~h~~~i~~~~~~~~--~l~s~~~dg~i~iw~~~~---------------------------------~~~~~~~ 80 (368)
+..++..-...++|..|+++ +||.|-.|..|++|.+.. ....+.+
T Consensus 370 c~YT~~nt~~~v~ca~fSddssmlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~~L~G 449 (707)
T KOG0263|consen 370 CMYTFHNTYQGVTCAEFSDDSSMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTSRTLYG 449 (707)
T ss_pred EEEEEEEcCCcceeEeecCCcchhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCceeEEeec
Confidence 34445445566899999866 999999999999996431 1223678
Q ss_pred CCCCeeEEEEe--CCEEEEEeCCCeEEEEeecCCCccccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEe
Q 047325 81 SSGLVKAIVIS--GEKIFTGHQDGKIRVWKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVS 158 (368)
Q Consensus 81 ~~~~v~~~~~~--~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 158 (368)
|.++|....|+ .++|++++.|+++|+|.+.+..... .+.||..+|.
T Consensus 450 H~GPVyg~sFsPd~rfLlScSED~svRLWsl~t~s~~V--------------------------------~y~GH~~PVw 497 (707)
T KOG0263|consen 450 HSGPVYGCSFSPDRRFLLSCSEDSSVRLWSLDTWSCLV--------------------------------IYKGHLAPVW 497 (707)
T ss_pred CCCceeeeeecccccceeeccCCcceeeeecccceeEE--------------------------------EecCCCccee
Confidence 99999999998 7799999999999999999876433 3446999999
Q ss_pred EEEEcCCCCEEEEEeCCCcEEEEEccCCeEEEEeecCCCceEEEEeCCCC-eEEEEcCCCeEEEEEcCCCCCCcccccce
Q 047325 159 CMSLDQDCGLLYTASWDRTFKVWRISDSKCLESVSAHDDAVNSVVSSSEG-LIFTGSADGTVKVWKREQHGKGTKHSLAQ 237 (368)
Q Consensus 159 ~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~ 237 (368)
++.|+|.|-+||+++.|++-++|.....++++.+.+|...|.|+.|+|+. ++++|+.|.++++||+.++. .++
T Consensus 498 dV~F~P~GyYFatas~D~tArLWs~d~~~PlRifaghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~------~VR 571 (707)
T KOG0263|consen 498 DVQFAPRGYYFATASHDQTARLWSTDHNKPLRIFAGHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGN------SVR 571 (707)
T ss_pred eEEecCCceEEEecCCCceeeeeecccCCchhhhcccccccceEEECCcccccccCCCCceEEEEEcCCCc------EEE
Confidence 99999999999999999999999999999999999999999999999999 99999999999999998874 578
Q ss_pred eeccccccEEEEEEcCCCCEEEEecCCCcEEEEeCCCccccceeeeccceEEEE--EEeCCCEEEEeeCCCeEEEEecCC
Q 047325 238 TLLKQECAVTALVVSSSRSIVYCGSSDGLVNFWEREKQLSHGGVLKGHKLAVLC--LAAAGKLVFSGSADKTICVWRRDG 315 (368)
Q Consensus 238 ~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~~~~~dg~i~iw~~~~ 315 (368)
.+.+|.++|.+++|+|+|++|++|+.||.|.+||+.++... ..+.+|...+.+ |+.+|..|++|+.|++|++||+..
T Consensus 572 iF~GH~~~V~al~~Sp~Gr~LaSg~ed~~I~iWDl~~~~~v-~~l~~Ht~ti~SlsFS~dg~vLasgg~DnsV~lWD~~~ 650 (707)
T KOG0263|consen 572 IFTGHKGPVTALAFSPCGRYLASGDEDGLIKIWDLANGSLV-KQLKGHTGTIYSLSFSRDGNVLASGGADNSVRLWDLTK 650 (707)
T ss_pred EecCCCCceEEEEEcCCCceEeecccCCcEEEEEcCCCcch-hhhhcccCceeEEEEecCCCEEEecCCCCeEEEEEchh
Confidence 88999999999999999999999999999999999987666 566778887755 556899999999999999999854
Q ss_pred Ccee----------------------eeEeeeccccCeeEEEEecCCe
Q 047325 316 AIHT----------------------CLSVLTGHTGPVKCLAVEEDRD 341 (368)
Q Consensus 316 ~~~~----------------------~~~~~~~h~~~v~~l~~~~~~~ 341 (368)
.... .+..+..-..+|..+.|.....
T Consensus 651 ~~~~~~~~~~~~~~~~~~~~~~~~~~llgs~~tK~tpv~~l~FtrrNl 698 (707)
T KOG0263|consen 651 VIELLNLGHISTSNSAITQENNASSLLLGSFYTKNTPVVGLHFTRRNL 698 (707)
T ss_pred hcccccccccccccccccccCCCCcceeeeeeecCceEEEEEEeccce
Confidence 3222 4555556667888888877665
No 22
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=100.00 E-value=2.7e-37 Score=249.20 Aligned_cols=342 Identities=19% Similarity=0.280 Sum_probs=247.1
Q ss_pred ccccccCCCceeeeccCcCCcEEEEEecCC--EEEEccCCCcEEEEcCCcc----eecccCCCCCeeEEEEe--CCEEEE
Q 047325 26 QFEENLPQNGLIGSLVREEGHIYSLAASKD--LLYTGSDSKNIRVWKNLKE----FCGFKASSGLVKAIVIS--GEKIFT 97 (368)
Q Consensus 26 ~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~--~l~s~~~dg~i~iw~~~~~----~~~~~~~~~~v~~~~~~--~~~l~s 97 (368)
.+..++.+......+..|..+++-..|+|. ++|+|...|+|||||.... ..+++.-.++|..++|+ +.+|++
T Consensus 41 v~ir~i~~~~~~~iYtEH~~~vtVAkySPsG~yiASGD~sG~vRIWdtt~~~hiLKnef~v~aG~I~Di~Wd~ds~RI~a 120 (603)
T KOG0318|consen 41 VIIRNIDNPASVDIYTEHAHQVTVAKYSPSGFYIASGDVSGKVRIWDTTQKEHILKNEFQVLAGPIKDISWDFDSKRIAA 120 (603)
T ss_pred EEEEECCCccceeeeccccceeEEEEeCCCceEEeecCCcCcEEEEeccCcceeeeeeeeecccccccceeCCCCcEEEE
Confidence 344556666667778899888888878765 9999999999999997652 23566778899999998 667776
Q ss_pred EeCC----CeEEEEeecCCCcccccc-----CCccccceeeeeccCCCCceeEecccce----eeeeecCCCEeEEEEcC
Q 047325 98 GHQD----GKIRVWKISPKNQSVHKR-----AGTLPTLKDIFKSSIKPSNYIEVRRHRT----ALWIRHSDAVSCMSLDQ 164 (368)
Q Consensus 98 ~~~d----g~i~vw~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~v~~~~~~~ 164 (368)
.++. |.+.+||-.+..-...-. ...+.....+-.......+.+.....+. ..+..|..-|.|+.|+|
T Consensus 121 vGEGrerfg~~F~~DSG~SvGei~GhSr~ins~~~KpsRPfRi~T~sdDn~v~ffeGPPFKFk~s~r~HskFV~~VRysP 200 (603)
T KOG0318|consen 121 VGEGRERFGHVFLWDSGNSVGEITGHSRRINSVDFKPSRPFRIATGSDDNTVAFFEGPPFKFKSSFREHSKFVNCVRYSP 200 (603)
T ss_pred EecCccceeEEEEecCCCccceeeccceeEeeeeccCCCceEEEeccCCCeEEEeeCCCeeeeecccccccceeeEEECC
Confidence 6542 346667654321111100 0011111111111122222222222222 23456999999999999
Q ss_pred CCCEEEEEeCCCcEEEEEccCCeEEEEee---cCCCceEEEEeCCCC-eEEEEcCCCeEEEEEcCCCCCC----------
Q 047325 165 DCGLLYTASWDRTFKVWRISDSKCLESVS---AHDDAVNSVVSSSEG-LIFTGSADGTVKVWKREQHGKG---------- 230 (368)
Q Consensus 165 ~~~~l~~~~~d~~i~iwd~~~~~~~~~~~---~~~~~v~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~---------- 230 (368)
||.++++++.||.|.+||-.+++.+..+. +|.+.|.++.|+||+ ++++++.|.+++|||+......
T Consensus 201 DG~~Fat~gsDgki~iyDGktge~vg~l~~~~aHkGsIfalsWsPDs~~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~ 280 (603)
T KOG0318|consen 201 DGSRFATAGSDGKIYIYDGKTGEKVGELEDSDAHKGSIFALSWSPDSTQFLTVSADKTIKIWDVSTNSLVSTWPMGSTVE 280 (603)
T ss_pred CCCeEEEecCCccEEEEcCCCccEEEEecCCCCccccEEEEEECCCCceEEEecCCceEEEEEeeccceEEEeecCCchh
Confidence 99999999999999999999999999998 899999999999999 9999999999999998765321
Q ss_pred ---------------------------cccccceeeccccccEEEEEEcCCCCEEEEecCCCcEEEEeCCCccccce---
Q 047325 231 ---------------------------TKHSLAQTLLKQECAVTALVVSSSRSIVYCGSSDGLVNFWEREKQLSHGG--- 280 (368)
Q Consensus 231 ---------------------------~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~--- 280 (368)
....+...+.+|...|+++..+|++++|++|+.||.|.-|+..++.....
T Consensus 281 dqqvG~lWqkd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~~i~SgsyDG~I~~W~~~~g~~~~~~g~ 360 (603)
T KOG0318|consen 281 DQQVGCLWQKDHLITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSPDGKTIYSGSYDGHINSWDSGSGTSDRLAGK 360 (603)
T ss_pred ceEEEEEEeCCeEEEEEcCcEEEEecccCCChhheecccccceeEEEEcCCCCEEEeeccCceEEEEecCCccccccccc
Confidence 11123456778999999999999999999999999999999653321100
Q ss_pred ---------------------------------------------------------------------eee--------
Q 047325 281 ---------------------------------------------------------------------VLK-------- 283 (368)
Q Consensus 281 ---------------------------------------------------------------------~~~-------- 283 (368)
.+.
T Consensus 361 ~h~nqI~~~~~~~~~~~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~~lav~~d~~~avv~~~~~iv~l~~~~~~~~~ 440 (603)
T KOG0318|consen 361 GHTNQIKGMAASESGELFTIGWDDTLRVISLKDNGYTKSEVVKLGSQPKGLAVLSDGGTAVVACISDIVLLQDQTKVSSI 440 (603)
T ss_pred cccceEEEEeecCCCcEEEEecCCeEEEEecccCcccccceeecCCCceeEEEcCCCCEEEEEecCcEEEEecCCcceee
Confidence 000
Q ss_pred --ccceEEEEEEeCCCEEEEeeCCCeEEEEecCCCceeeeEeeeccccCeeEEEEecCCeeeecCCcceEE---------
Q 047325 284 --GHKLAVLCLAAAGKLVFSGSADKTICVWRRDGAIHTCLSVLTGHTGPVKCLAVEEDRDSSSSTSSCAQR--------- 352 (368)
Q Consensus 284 --~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~--------- 352 (368)
+-.....+++|++..++.|+.||.|+||.+.............|.++|++++++||+.++|+++...++
T Consensus 441 ~~~y~~s~vAv~~~~~~vaVGG~Dgkvhvysl~g~~l~ee~~~~~h~a~iT~vaySpd~~yla~~Da~rkvv~yd~~s~~ 520 (603)
T KOG0318|consen 441 PIGYESSAVAVSPDGSEVAVGGQDGKVHVYSLSGDELKEEAKLLEHRAAITDVAYSPDGAYLAAGDASRKVVLYDVASRE 520 (603)
T ss_pred ccccccceEEEcCCCCEEEEecccceEEEEEecCCcccceeeeecccCCceEEEECCCCcEEEEeccCCcEEEEEcccCc
Confidence 001122456678999999999999999999876545555667899999999999999999999854332
Q ss_pred -----E-----------------EEeeCCcccccccC
Q 047325 353 -----W-----------------IVYSGSLDKSDDDV 367 (368)
Q Consensus 353 -----w-----------------~l~sg~~D~~v~i~ 367 (368)
| .++|||.|-+|.||
T Consensus 521 ~~~~~w~FHtakI~~~aWsP~n~~vATGSlDt~Viiy 557 (603)
T KOG0318|consen 521 VKTNRWAFHTAKINCVAWSPNNKLVATGSLDTNVIIY 557 (603)
T ss_pred eecceeeeeeeeEEEEEeCCCceEEEeccccceEEEE
Confidence 1 37888888888877
No 23
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=100.00 E-value=6.6e-38 Score=241.80 Aligned_cols=286 Identities=18% Similarity=0.256 Sum_probs=237.7
Q ss_pred CceeeeccCcCCcEEEEEecCC--EEEEccCCCcEEEEcCCcc--eecccCCCCCeeEEEEe--CCEEEEEeCCCeEEEE
Q 047325 34 NGLIGSLVREEGHIYSLAASKD--LLYTGSDSKNIRVWKNLKE--FCGFKASSGLVKAIVIS--GEKIFTGHQDGKIRVW 107 (368)
Q Consensus 34 ~~~~~~~~~h~~~i~~~~~~~~--~l~s~~~dg~i~iw~~~~~--~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~vw 107 (368)
...+.+|..|++.|++++.+|+ +++||+.|..-.+|+..++ ...+.+|...|+++.|+ |.+|+||+.+|.|+||
T Consensus 54 DdS~~tF~~H~~svFavsl~P~~~l~aTGGgDD~AflW~~~~ge~~~eltgHKDSVt~~~FshdgtlLATGdmsG~v~v~ 133 (399)
T KOG0296|consen 54 DDSLVTFDKHTDSVFAVSLHPNNNLVATGGGDDLAFLWDISTGEFAGELTGHKDSVTCCSFSHDGTLLATGDMSGKVLVF 133 (399)
T ss_pred ccceeehhhcCCceEEEEeCCCCceEEecCCCceEEEEEccCCcceeEecCCCCceEEEEEccCceEEEecCCCccEEEE
Confidence 5667889999999999999876 9999999999999998754 56788999999999998 8899999999999999
Q ss_pred eecCCCccccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcCCCCEEEEEeCCCcEEEEEccCCe
Q 047325 108 KISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCGLLYTASWDRTFKVWRISDSK 187 (368)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~ 187 (368)
+..++........ .-+.+.-+.|+|.+..|++|+.||.+-.|.+.++.
T Consensus 134 ~~stg~~~~~~~~--------------------------------e~~dieWl~WHp~a~illAG~~DGsvWmw~ip~~~ 181 (399)
T KOG0296|consen 134 KVSTGGEQWKLDQ--------------------------------EVEDIEWLKWHPRAHILLAGSTDGSVWMWQIPSQA 181 (399)
T ss_pred EcccCceEEEeec--------------------------------ccCceEEEEecccccEEEeecCCCcEEEEECCCcc
Confidence 9998875443321 34567789999999999999999999999999988
Q ss_pred EEEEeecCCCceEEEEeCCCC-eEEEEcCCCeEEEEEcCCCCCCcccc--------c-----------------------
Q 047325 188 CLESVSAHDDAVNSVVSSSEG-LIFTGSADGTVKVWKREQHGKGTKHS--------L----------------------- 235 (368)
Q Consensus 188 ~~~~~~~~~~~v~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~--------~----------------------- 235 (368)
..+.+.+|..++++=.|.|+| .++++..||+|++||+.+........ +
T Consensus 182 ~~kv~~Gh~~~ct~G~f~pdGKr~~tgy~dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~ 261 (399)
T KOG0296|consen 182 LCKVMSGHNSPCTCGEFIPDGKRILTGYDDGTIIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNSEGVACGVN 261 (399)
T ss_pred eeeEecCCCCCcccccccCCCceEEEEecCceEEEEecCCCceeEEecccccCcCCccccccccceeEeccCCccEEEEc
Confidence 899999999999999999999 99999999999999998764311100 0
Q ss_pred ------ceeec--------cccccEEEEE---EcCCCCEEEEecCCCcEEEEeCCCccccceeeeccceEEEEEEeCC-C
Q 047325 236 ------AQTLL--------KQECAVTALV---VSSSRSIVYCGSSDGLVNFWEREKQLSHGGVLKGHKLAVLCLAAAG-K 297 (368)
Q Consensus 236 ------~~~~~--------~~~~~i~~~~---~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~-~ 297 (368)
+.... .++..+.++. ++..-.+.|+|+.||+|.|||+..... +....|...|+.+.+.+ .
T Consensus 262 ~~sgKVv~~~n~~~~~l~~~~e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~~~--R~~c~he~~V~~l~w~~t~ 339 (399)
T KOG0296|consen 262 NGSGKVVNCNNGTVPELKPSQEELDESVESIPSSSKLPLAACGSVDGTIAIYDLAASTL--RHICEHEDGVTKLKWLNTD 339 (399)
T ss_pred cccceEEEecCCCCccccccchhhhhhhhhcccccccchhhcccccceEEEEecccchh--heeccCCCceEEEEEcCcc
Confidence 00000 1122233333 333446789999999999999987543 45667888899988876 8
Q ss_pred EEEEeeCCCeEEEEecCCCceeeeEeeeccccCeeEEEEecCCeeeecCCcceEEEEEeeCCcccccccC
Q 047325 298 LVFSGSADKTICVWRRDGAIHTCLSVLTGHTGPVKCLAVEEDRDSSSSTSSCAQRWIVYSGSLDKSDDDV 367 (368)
Q Consensus 298 ~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~w~l~sg~~D~~v~i~ 367 (368)
+|++++.||.|+.||.+++ +++.++.+|..+|.+++++|+++ +++|+|.|++.+||
T Consensus 340 ~l~t~c~~g~v~~wDaRtG--~l~~~y~GH~~~Il~f~ls~~~~------------~vvT~s~D~~a~VF 395 (399)
T KOG0296|consen 340 YLLTACANGKVRQWDARTG--QLKFTYTGHQMGILDFALSPQKR------------LVVTVSDDNTALVF 395 (399)
T ss_pred hheeeccCceEEeeecccc--ceEEEEecCchheeEEEEcCCCc------------EEEEecCCCeEEEE
Confidence 9999999999999998887 88999999999999999999999 78999999998887
No 24
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=6.5e-38 Score=228.12 Aligned_cols=267 Identities=19% Similarity=0.310 Sum_probs=226.9
Q ss_pred eeeccCcCCcEEEEEec--CCEEEEccCCCcEEEEcCCcc--eecccCCCCCeeEEEEe--CCEEEEEeCCCeEEEEeec
Q 047325 37 IGSLVREEGHIYSLAAS--KDLLYTGSDSKNIRVWKNLKE--FCGFKASSGLVKAIVIS--GEKIFTGHQDGKIRVWKIS 110 (368)
Q Consensus 37 ~~~~~~h~~~i~~~~~~--~~~l~s~~~dg~i~iw~~~~~--~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~vw~~~ 110 (368)
.+.+..|+++|.++.|+ |++.++++.|.+||+||+.+. +.++.+|...|..++.+ +..+++|+.|..+.+||++
T Consensus 10 ~~~l~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg~liktYsghG~EVlD~~~s~Dnskf~s~GgDk~v~vwDV~ 89 (307)
T KOG0316|consen 10 LSILDCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGALIKTYSGHGHEVLDAALSSDNSKFASCGGDKAVQVWDVN 89 (307)
T ss_pred ceeecccccceEEEEEccCCCEEEEcCCCceEEeecccccceeeeecCCCceeeeccccccccccccCCCCceEEEEEcc
Confidence 45688999999999997 569999999999999998754 67899999999988876 7799999999999999999
Q ss_pred CCCccccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcCCCCEEEEEeCCCcEEEEEccC--CeE
Q 047325 111 PKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCGLLYTASWDRTFKVWRISD--SKC 188 (368)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~--~~~ 188 (368)
+++.... |.+|...|+.++|+.+...+++|+.|..+++||.++ .++
T Consensus 90 TGkv~Rr--------------------------------~rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~eP 137 (307)
T KOG0316|consen 90 TGKVDRR--------------------------------FRGHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFEP 137 (307)
T ss_pred cCeeeee--------------------------------cccccceeeEEEecCcceEEEeccccceeEEEEcccCCCCc
Confidence 9985443 445999999999999999999999999999999875 568
Q ss_pred EEEeecCCCceEEEEeCCCCeEEEEcCCCeEEEEEcCCCCCCcccccceeeccccccEEEEEEcCCCCEEEEecCCCcEE
Q 047325 189 LESVSAHDDAVNSVVSSSEGLIFTGSADGTVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSSSRSIVYCGSSDGLVN 268 (368)
Q Consensus 189 ~~~~~~~~~~v~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~ 268 (368)
++.+......|.++..... .+++|+.||+++.||+|.+.. . ......+|++++|+++++..+.++.|++++
T Consensus 138 iQildea~D~V~Si~v~~h-eIvaGS~DGtvRtydiR~G~l------~--sDy~g~pit~vs~s~d~nc~La~~l~stlr 208 (307)
T KOG0316|consen 138 IQILDEAKDGVSSIDVAEH-EIVAGSVDGTVRTYDIRKGTL------S--SDYFGHPITSVSFSKDGNCSLASSLDSTLR 208 (307)
T ss_pred cchhhhhcCceeEEEeccc-EEEeeccCCcEEEEEeeccee------e--hhhcCCcceeEEecCCCCEEEEeeccceee
Confidence 8999888889999987643 799999999999999997732 2 233456799999999999999999999999
Q ss_pred EEeCCCccccceeeeccceEE----EEEEeCCCEEEEeeCCCeEEEEecCCCceeeeEeeeccccC-eeEEEEecCCeee
Q 047325 269 FWEREKQLSHGGVLKGHKLAV----LCLAAAGKLVFSGSADKTICVWRRDGAIHTCLSVLTGHTGP-VKCLAVEEDRDSS 343 (368)
Q Consensus 269 i~d~~~~~~~~~~~~~~~~~~----~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~-v~~l~~~~~~~~~ 343 (368)
+.|-++++.+ ..+.+|...- .++......+++|++||.|++||+... ..+..+..+... |++++++|...-+
T Consensus 209 LlDk~tGklL-~sYkGhkn~eykldc~l~qsdthV~sgSEDG~Vy~wdLvd~--~~~sk~~~~~~v~v~dl~~hp~~~~f 285 (307)
T KOG0316|consen 209 LLDKETGKLL-KSYKGHKNMEYKLDCCLNQSDTHVFSGSEDGKVYFWDLVDE--TQISKLSVVSTVIVTDLSCHPTMDDF 285 (307)
T ss_pred ecccchhHHH-HHhcccccceeeeeeeecccceeEEeccCCceEEEEEeccc--eeeeeeccCCceeEEeeecccCccce
Confidence 9999998777 5677887655 344446779999999999999999776 667777777777 8999999988754
Q ss_pred ecCC
Q 047325 344 SSTS 347 (368)
Q Consensus 344 ~~~~ 347 (368)
.++.
T Consensus 286 ~~A~ 289 (307)
T KOG0316|consen 286 ITAT 289 (307)
T ss_pred eEec
Confidence 4443
No 25
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=100.00 E-value=5.9e-38 Score=249.69 Aligned_cols=267 Identities=21% Similarity=0.309 Sum_probs=226.8
Q ss_pred CcEEEEEec--CCEEEEccCCCcEEEEcCCc-ceecccCCCCCeeEEEEe--CCEEEEEeCCCeEEEEeecCCCcccccc
Q 047325 45 GHIYSLAAS--KDLLYTGSDSKNIRVWKNLK-EFCGFKASSGLVKAIVIS--GEKIFTGHQDGKIRVWKISPKNQSVHKR 119 (368)
Q Consensus 45 ~~i~~~~~~--~~~l~s~~~dg~i~iw~~~~-~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~vw~~~~~~~~~~~~ 119 (368)
..|++|+|+ |++||+|+.||.+|+|+... .+..+..|.++|.++.|+ |+||++++.||++.+||..++.......
T Consensus 236 kdVT~L~Wn~~G~~LatG~~~G~~riw~~~G~l~~tl~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g~~~q~f~ 315 (524)
T KOG0273|consen 236 KDVTSLDWNNDGTLLATGSEDGEARIWNKDGNLISTLGQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTGTVKQQFE 315 (524)
T ss_pred CCcceEEecCCCCeEEEeecCcEEEEEecCchhhhhhhccCCceEEEEEcCCCCEEEeccCCccEEEEeccCceEEEeee
Confidence 459999998 67999999999999999874 567889999999999999 8899999999999999998887544433
Q ss_pred CCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcCCCCEEEEEeCCCcEEEEEccCCeEEEEeecCCCce
Q 047325 120 AGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCGLLYTASWDRTFKVWRISDSKCLESVSAHDDAV 199 (368)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v 199 (368)
. |..+-..+.|-.+ ..|++++.|+.|+++.+....++.++.+|.++|
T Consensus 316 ~--------------------------------~s~~~lDVdW~~~-~~F~ts~td~~i~V~kv~~~~P~~t~~GH~g~V 362 (524)
T KOG0273|consen 316 F--------------------------------HSAPALDVDWQSN-DEFATSSTDGCIHVCKVGEDRPVKTFIGHHGEV 362 (524)
T ss_pred e--------------------------------ccCCccceEEecC-ceEeecCCCceEEEEEecCCCcceeeecccCce
Confidence 3 6666677888654 579999999999999999999999999999999
Q ss_pred EEEEeCCCC-eEEEEcCCCeEEEEEcCCCCCCcccccceeeccccccEEEEEEcCCC---------CEEEEecCCCcEEE
Q 047325 200 NSVVSSSEG-LIFTGSADGTVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSSSR---------SIVYCGSSDGLVNF 269 (368)
Q Consensus 200 ~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~---------~~l~~~~~dg~i~i 269 (368)
.++.|.|.+ +|++++.|++++||..... .....+..|...|..+.|+|.+ ..+++++.|++|++
T Consensus 363 ~alk~n~tg~LLaS~SdD~TlkiWs~~~~------~~~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~l 436 (524)
T KOG0273|consen 363 NALKWNPTGSLLASCSDDGTLKIWSMGQS------NSVHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKL 436 (524)
T ss_pred EEEEECCCCceEEEecCCCeeEeeecCCC------cchhhhhhhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEE
Confidence 999999999 9999999999999998655 3567788999999999999954 47999999999999
Q ss_pred EeCCCccccceeeeccceEEEEE--EeCCCEEEEeeCCCeEEEEecCCCceeeeEeeeccccCeeEEEEecCCeeeecCC
Q 047325 270 WEREKQLSHGGVLKGHKLAVLCL--AAAGKLVFSGSADKTICVWRRDGAIHTCLSVLTGHTGPVKCLAVEEDRDSSSSTS 347 (368)
Q Consensus 270 ~d~~~~~~~~~~~~~~~~~~~~~--~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~ 347 (368)
||...+.++ ..+..|..+|+++ +|+++++++|+.||.|++|+..++ +..+.+. -.+.|..++|+.+|.
T Consensus 437 wdv~~gv~i-~~f~kH~~pVysvafS~~g~ylAsGs~dg~V~iws~~~~--~l~~s~~-~~~~Ifel~Wn~~G~------ 506 (524)
T KOG0273|consen 437 WDVESGVPI-HTLMKHQEPVYSVAFSPNGRYLASGSLDGCVHIWSTKTG--KLVKSYQ-GTGGIFELCWNAAGD------ 506 (524)
T ss_pred EEccCCcee-EeeccCCCceEEEEecCCCcEEEecCCCCeeEeccccch--heeEeec-CCCeEEEEEEcCCCC------
Confidence 999998776 5677788888655 567999999999999999987776 6666665 456699999999998
Q ss_pred cceEEEEEeeCCccccccc
Q 047325 348 SCAQRWIVYSGSLDKSDDD 366 (368)
Q Consensus 348 ~~~~~w~l~sg~~D~~v~i 366 (368)
.|..+-.|+.+++
T Consensus 507 ------kl~~~~sd~~vcv 519 (524)
T KOG0273|consen 507 ------KLGACASDGSVCV 519 (524)
T ss_pred ------EEEEEecCCCceE
Confidence 4555555555543
No 26
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=100.00 E-value=5e-37 Score=253.41 Aligned_cols=279 Identities=31% Similarity=0.491 Sum_probs=233.5
Q ss_pred eeeccCcCCcEEEEEecC--CEEEEccCCCcEEEEcCCc--ceecccCCCCCeeEEEEe--CCEEEEEeCCCeEEEEeec
Q 047325 37 IGSLVREEGHIYSLAASK--DLLYTGSDSKNIRVWKNLK--EFCGFKASSGLVKAIVIS--GEKIFTGHQDGKIRVWKIS 110 (368)
Q Consensus 37 ~~~~~~h~~~i~~~~~~~--~~l~s~~~dg~i~iw~~~~--~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~vw~~~ 110 (368)
+.++.+|.++|.++++++ ++|++++.||.|++|+... ....+..|...+..+.|. ++++++++.||.|++|++.
T Consensus 2 ~~~~~~h~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~~ 81 (289)
T cd00200 2 RRTLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADGTYLASGSSDKTIRLWDLE 81 (289)
T ss_pred chHhcccCCCEEEEEEcCCCCEEEEeecCcEEEEEEeeCCCcEEEEecCCcceeEEEECCCCCEEEEEcCCCeEEEEEcC
Confidence 456789999999999986 5999999999999999874 355677888999899988 5689999999999999998
Q ss_pred CCCccccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcCCCCEEEEEeCCCcEEEEEccCCeEEE
Q 047325 111 PKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCGLLYTASWDRTFKVWRISDSKCLE 190 (368)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~ 190 (368)
+++... .+..|...+.++.|+++++++++++.|+.|.+||+.+++...
T Consensus 82 ~~~~~~--------------------------------~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 129 (289)
T cd00200 82 TGECVR--------------------------------TLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLT 129 (289)
T ss_pred cccceE--------------------------------EEeccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCCcEEEE
Confidence 753222 222377899999999998888888889999999999999999
Q ss_pred EeecCCCceEEEEeCCCC-eEEEEcCCCeEEEEEcCCCCCCcccccceeeccccccEEEEEEcCCCCEEEEecCCCcEEE
Q 047325 191 SVSAHDDAVNSVVSSSEG-LIFTGSADGTVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSSSRSIVYCGSSDGLVNF 269 (368)
Q Consensus 191 ~~~~~~~~v~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i 269 (368)
.+..|...+.++.++|++ ++++++.|+.|++||++... ....+..+...+.++.|+|+++.+++++.++.|++
T Consensus 130 ~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~------~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i 203 (289)
T cd00200 130 TLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGK------CVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKL 203 (289)
T ss_pred EeccCCCcEEEEEEcCcCCEEEEEcCCCcEEEEEccccc------cceeEecCccccceEEECCCcCEEEEecCCCcEEE
Confidence 999899999999999988 77777779999999998542 34555677889999999999999999999999999
Q ss_pred EeCCCccccceeeeccceEEEE--EEeCCCEEEEeeCCCeEEEEecCCCceeeeEeeeccccCeeEEEEecCCeeeecCC
Q 047325 270 WEREKQLSHGGVLKGHKLAVLC--LAAAGKLVFSGSADKTICVWRRDGAIHTCLSVLTGHTGPVKCLAVEEDRDSSSSTS 347 (368)
Q Consensus 270 ~d~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~ 347 (368)
||++..... ..+..|...+.+ +++++.++++++.||.|++|++... .....+..|...|.+++|+|++.
T Consensus 204 ~d~~~~~~~-~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~i~~~~~~--~~~~~~~~~~~~i~~~~~~~~~~------ 274 (289)
T cd00200 204 WDLSTGKCL-GTLRGHENGVNSVAFSPDGYLLASGSEDGTIRVWDLRTG--ECVQTLSGHTNSVTSLAWSPDGK------ 274 (289)
T ss_pred EECCCCcee-cchhhcCCceEEEEEcCCCcEEEEEcCCCcEEEEEcCCc--eeEEEccccCCcEEEEEECCCCC------
Confidence 999875544 344456655644 4456788888888999999998865 56677778999999999999988
Q ss_pred cceEEEEEeeCCcccccccCC
Q 047325 348 SCAQRWIVYSGSLDKSDDDVH 368 (368)
Q Consensus 348 ~~~~~w~l~sg~~D~~v~i~h 368 (368)
.+++++.|+.|++|.
T Consensus 275 ------~l~~~~~d~~i~iw~ 289 (289)
T cd00200 275 ------RLASGSADGTIRIWD 289 (289)
T ss_pred ------EEEEecCCCeEEecC
Confidence 788999999999984
No 27
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=2.1e-37 Score=267.19 Aligned_cols=283 Identities=26% Similarity=0.434 Sum_probs=234.1
Q ss_pred ceeeeccCc-CCcEEEEEecCC--EEEEccCCCcEEEEcCCc----ceecccCCCCCeeEEEEe--CCEEEEEeCCCeEE
Q 047325 35 GLIGSLVRE-EGHIYSLAASKD--LLYTGSDSKNIRVWKNLK----EFCGFKASSGLVKAIVIS--GEKIFTGHQDGKIR 105 (368)
Q Consensus 35 ~~~~~~~~h-~~~i~~~~~~~~--~l~s~~~dg~i~iw~~~~----~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~ 105 (368)
.+...+.+| ...|.++.|+++ .+++++.|+.+++|+... ....+.+|...|.+++|+ +.++++++.|++|+
T Consensus 149 ~~~~~~~~~~~~sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~l~~h~~~v~~~~fs~d~~~l~s~s~D~tir 228 (456)
T KOG0266|consen 149 SLEQTLAGHECPSVTCVDFSPDGRALAAASSDGLIRIWKLEGIKSNLLRELSGHTRGVSDVAFSPDGSYLLSGSDDKTLR 228 (456)
T ss_pred eeeeeecccccCceEEEEEcCCCCeEEEccCCCcEEEeecccccchhhccccccccceeeeEECCCCcEEEEecCCceEE
Confidence 334555555 678999998744 999999999999999842 344557899999999998 77999999999999
Q ss_pred EEeecCCCccccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcCCCCEEEEEeCCCcEEEEEccC
Q 047325 106 VWKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCGLLYTASWDRTFKVWRISD 185 (368)
Q Consensus 106 vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~ 185 (368)
+||+..... ...++.+|...|++++|+|+++++++|+.|++|++||+++
T Consensus 229 iwd~~~~~~-------------------------------~~~~l~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~ 277 (456)
T KOG0266|consen 229 IWDLKDDGR-------------------------------NLKTLKGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRT 277 (456)
T ss_pred EeeccCCCe-------------------------------EEEEecCCCCceEEEEecCCCCEEEEecCCCcEEEEeccC
Confidence 999944321 2334556999999999999999999999999999999999
Q ss_pred CeEEEEeecCCCceEEEEeCCCC-eEEEEcCCCeEEEEEcCCCCCCcccccceeeccccc--cEEEEEEcCCCCEEEEec
Q 047325 186 SKCLESVSAHDDAVNSVVSSSEG-LIFTGSADGTVKVWKREQHGKGTKHSLAQTLLKQEC--AVTALVVSSSRSIVYCGS 262 (368)
Q Consensus 186 ~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~--~i~~~~~~~~~~~l~~~~ 262 (368)
++++..+.+|...|.+++|++++ +|++++.|+.|++||+..+... +...+..+.. ++++++|+|++.+++++.
T Consensus 278 ~~~~~~l~~hs~~is~~~f~~d~~~l~s~s~d~~i~vwd~~~~~~~----~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~ 353 (456)
T KOG0266|consen 278 GECVRKLKGHSDGISGLAFSPDGNLLVSASYDGTIRVWDLETGSKL----CLKLLSGAENSAPVTSVQFSPNGKYLLSAS 353 (456)
T ss_pred CeEEEeeeccCCceEEEEECCCCCEEEEcCCCccEEEEECCCCcee----eeecccCCCCCCceeEEEECCCCcEEEEec
Confidence 99999999999999999999999 9999999999999999876421 2334444443 599999999999999999
Q ss_pred CCCcEEEEeCCCccccceeeeccceEEEEE-----EeCCCEEEEeeCCCeEEEEecCCCceeeeEeeecc-ccCeeEEEE
Q 047325 263 SDGLVNFWEREKQLSHGGVLKGHKLAVLCL-----AAAGKLVFSGSADKTICVWRRDGAIHTCLSVLTGH-TGPVKCLAV 336 (368)
Q Consensus 263 ~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~-----~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h-~~~v~~l~~ 336 (368)
.|+.+++||++..... ....+|...+.++ .+.+.++++|+.|+.|++|++.+. ..+..+.+| ...+..+++
T Consensus 354 ~d~~~~~w~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~sg~~d~~v~~~~~~s~--~~~~~l~~h~~~~~~~~~~ 430 (456)
T KOG0266|consen 354 LDRTLKLWDLRSGKSV-GTYTGHSNLVRCIFSPTLSTGGKLIYSGSEDGSVYVWDSSSG--GILQRLEGHSKAAVSDLSS 430 (456)
T ss_pred CCCeEEEEEccCCcce-eeecccCCcceeEecccccCCCCeEEEEeCCceEEEEeCCcc--chhhhhcCCCCCceecccc
Confidence 9999999999987665 4555565543333 357999999999999999999875 777888999 889999999
Q ss_pred ecCCeeeecCCcceEEEEEeeCC--cccccccC
Q 047325 337 EEDRDSSSSTSSCAQRWIVYSGS--LDKSDDDV 367 (368)
Q Consensus 337 ~~~~~~~~~~~~~~~~w~l~sg~--~D~~v~i~ 367 (368)
+|... ++++++ .|+.+++|
T Consensus 431 ~~~~~------------~~~s~s~~~d~~~~~w 451 (456)
T KOG0266|consen 431 HPTEN------------LIASSSFEGDGLIRLW 451 (456)
T ss_pred CCCcC------------eeeecCcCCCceEEEe
Confidence 99999 555555 67777776
No 28
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=2.7e-38 Score=264.60 Aligned_cols=291 Identities=23% Similarity=0.314 Sum_probs=248.0
Q ss_pred cccCCCceeeeccCcCCcEEEEEecC---CEEEEccCCCcEEEEcCCccee-cccCCCCCeeEEE-Ee-CCEEEEEeCCC
Q 047325 29 ENLPQNGLIGSLVREEGHIYSLAASK---DLLYTGSDSKNIRVWKNLKEFC-GFKASSGLVKAIV-IS-GEKIFTGHQDG 102 (368)
Q Consensus 29 ~~~~~~~~~~~~~~h~~~i~~~~~~~---~~l~s~~~dg~i~iw~~~~~~~-~~~~~~~~v~~~~-~~-~~~l~s~~~dg 102 (368)
-+....++.+.+.|..+.|.++.|-| ++||.++..+.+|+++..+..+ .+.+|...|.++. ++ |..|+||+.|.
T Consensus 308 ~d~~~l~i~k~ivG~ndEI~Dm~~lG~e~~~laVATNs~~lr~y~~~~~~c~ii~GH~e~vlSL~~~~~g~llat~sKD~ 387 (775)
T KOG0319|consen 308 YDEDELTIVKQIVGYNDEILDMKFLGPEESHLAVATNSPELRLYTLPTSYCQIIPGHTEAVLSLDVWSSGDLLATGSKDK 387 (775)
T ss_pred EEccccEEehhhcCCchhheeeeecCCccceEEEEeCCCceEEEecCCCceEEEeCchhheeeeeecccCcEEEEecCCc
Confidence 34566778888999999999999976 4999999999999998876544 5789999999999 44 77999999999
Q ss_pred eEEEEeecCCCccccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcCCC-CEEEEEeCCCcEEEE
Q 047325 103 KIRVWKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDC-GLLYTASWDRTFKVW 181 (368)
Q Consensus 103 ~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~iw 181 (368)
++++|.++++...... .....+|.+.|.+++++..+ .+|++++.|+++++|
T Consensus 388 svilWr~~~~~~~~~~----------------------------~a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W 439 (775)
T KOG0319|consen 388 SVILWRLNNNCSKSLC----------------------------VAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLW 439 (775)
T ss_pred eEEEEEecCCcchhhh----------------------------hhhhcccccccceeeecccCccEEEEecCCceEEEe
Confidence 9999999554322111 12234599999999997744 589999999999999
Q ss_pred EccCCeE-----EE----EeecCCCceEEEEeCCCC-eEEEEcCCCeEEEEEcCCCCCCcccccceeeccccccEEEEEE
Q 047325 182 RISDSKC-----LE----SVSAHDDAVNSVVSSSEG-LIFTGSADGTVKVWKREQHGKGTKHSLAQTLLKQECAVTALVV 251 (368)
Q Consensus 182 d~~~~~~-----~~----~~~~~~~~v~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 251 (368)
++...+. .. ....|+..|+|++.+|+. ++++|+.|.+.++|++.+. .....+.+|...+.++.|
T Consensus 440 ~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~ndkLiAT~SqDktaKiW~le~~------~l~~vLsGH~RGvw~V~F 513 (775)
T KOG0319|consen 440 DLPKSKETAFPIVLTCRYTERAHDKDINCVAIAPNDKLIATGSQDKTAKIWDLEQL------RLLGVLSGHTRGVWCVSF 513 (775)
T ss_pred cCCCcccccccceehhhHHHHhhcccccceEecCCCceEEecccccceeeecccCc------eEEEEeeCCccceEEEEe
Confidence 9976321 11 234699999999999999 9999999999999999854 467889999999999999
Q ss_pred cCCCCEEEEecCCCcEEEEeCCCccccceeeeccceEEEEEEe--CCCEEEEeeCCCeEEEEecCCCceeeeEeeecccc
Q 047325 252 SSSRSIVYCGSSDGLVNFWEREKQLSHGGVLKGHKLAVLCLAA--AGKLVFSGSADKTICVWRRDGAIHTCLSVLTGHTG 329 (368)
Q Consensus 252 ~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~ 329 (368)
+|..+.+++++.|++|+||.+.+..+. ..+.+|...|...++ ++..|++++.||.|++|++.+. .++.++.+|.+
T Consensus 514 s~~dq~laT~SgD~TvKIW~is~fSCl-kT~eGH~~aVlra~F~~~~~qliS~~adGliKlWnikt~--eC~~tlD~H~D 590 (775)
T KOG0319|consen 514 SKNDQLLATCSGDKTVKIWSISTFSCL-KTFEGHTSAVLRASFIRNGKQLISAGADGLIKLWNIKTN--ECEMTLDAHND 590 (775)
T ss_pred ccccceeEeccCCceEEEEEeccceee-eeecCccceeEeeeeeeCCcEEEeccCCCcEEEEeccch--hhhhhhhhccc
Confidence 999999999999999999999997666 788999999976665 8999999999999999999887 89999999999
Q ss_pred CeeEEEEecCCeeeecCCcceEEEEEeeCCcccccccCC
Q 047325 330 PVKCLAVEEDRDSSSSTSSCAQRWIVYSGSLDKSDDDVH 368 (368)
Q Consensus 330 ~v~~l~~~~~~~~~~~~~~~~~~w~l~sg~~D~~v~i~h 368 (368)
.|++++.+|... .++||+.||.|-+||
T Consensus 591 rvWaL~~~~~~~------------~~~tgg~Dg~i~~wk 617 (775)
T KOG0319|consen 591 RVWALSVSPLLD------------MFVTGGGDGRIIFWK 617 (775)
T ss_pred eeEEEeecCccc------------eeEecCCCeEEEEee
Confidence 999999999998 677888888888875
No 29
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=100.00 E-value=7.3e-38 Score=242.72 Aligned_cols=277 Identities=24% Similarity=0.371 Sum_probs=233.6
Q ss_pred CcCCcEEEEEecCCEEEEccCCCcEEEEcCC-cceecccCCCCCeeEEEEe--C---CEEEEEeCCCeEEEEeecCCCcc
Q 047325 42 REEGHIYSLAASKDLLYTGSDSKNIRVWKNL-KEFCGFKASSGLVKAIVIS--G---EKIFTGHQDGKIRVWKISPKNQS 115 (368)
Q Consensus 42 ~h~~~i~~~~~~~~~l~s~~~dg~i~iw~~~-~~~~~~~~~~~~v~~~~~~--~---~~l~s~~~dg~i~vw~~~~~~~~ 115 (368)
-|.+-|.++.-.++.++||+.||.+++||.. +....+.+|.++|.++++- + ..+++++.|.++++|.++.++..
T Consensus 103 ~hdDWVSsv~~~~~~IltgsYDg~~riWd~~Gk~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~~~~ 182 (423)
T KOG0313|consen 103 LHDDWVSSVKGASKWILTGSYDGTSRIWDLKGKSIKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNVGENK 182 (423)
T ss_pred cchhhhhhhcccCceEEEeecCCeeEEEecCCceEEEEecCCcceeeeEEEecCCccceEEEecCCceEEEEEecCchhh
Confidence 4778888888888899999999999999987 4567889999999998885 3 35999999999999999887654
Q ss_pred ccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcCCCCEEEEEeCCCcEEEEEccC----------
Q 047325 116 VHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCGLLYTASWDRTFKVWRISD---------- 185 (368)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~---------- 185 (368)
..... .-.||...|-++...+++..+++|+.|..|.+|+..+
T Consensus 183 ~~~~~----------------------------~~~GHk~~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s 234 (423)
T KOG0313|consen 183 VKALK----------------------------VCRGHKRSVDSVSVDSSGTRFCSGSWDTMLKIWSVETDEEDELESSS 234 (423)
T ss_pred hhHHh----------------------------HhcccccceeEEEecCCCCeEEeecccceeeecccCCCccccccccc
Confidence 33221 1126999999999999999999999999999999321
Q ss_pred ---------------CeEEEEeecCCCceEEEEeCCCCeEEEEcCCCeEEEEEcCCCCCCcccccceeeccccccEEEEE
Q 047325 186 ---------------SKCLESVSAHDDAVNSVVSSSEGLIFTGSADGTVKVWKREQHGKGTKHSLAQTLLKQECAVTALV 250 (368)
Q Consensus 186 ---------------~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~i~~~~ 250 (368)
+.++..+.+|..+|.++.|++.+.+++++.|.+|+.||+..++. ... ......+.++.
T Consensus 235 ~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d~~v~yS~SwDHTIk~WDletg~~------~~~-~~~~ksl~~i~ 307 (423)
T KOG0313|consen 235 NRRRKKQKREKEGGTRTPLVTLEGHTEPVSSVVWSDATVIYSVSWDHTIKVWDLETGGL------KST-LTTNKSLNCIS 307 (423)
T ss_pred hhhhhhhhhhhcccccCceEEecccccceeeEEEcCCCceEeecccceEEEEEeecccc------eee-eecCcceeEee
Confidence 23677888999999999999977999999999999999988743 222 23456789999
Q ss_pred EcCCCCEEEEecCCCcEEEEeCCCc--cccceeeeccceEEEEEEe---CCCEEEEeeCCCeEEEEecCCCceeeeEeee
Q 047325 251 VSSSRSIVYCGSSDGLVNFWEREKQ--LSHGGVLKGHKLAVLCLAA---AGKLVFSGSADKTICVWRRDGAIHTCLSVLT 325 (368)
Q Consensus 251 ~~~~~~~l~~~~~dg~i~i~d~~~~--~~~~~~~~~~~~~~~~~~~---~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~ 325 (368)
++|..++|++|+.|..+++||.+++ ......+.+|...|.++.+ +...|++|+.|+++++||++.. ..++..+.
T Consensus 308 ~~~~~~Ll~~gssdr~irl~DPR~~~gs~v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~-k~plydI~ 386 (423)
T KOG0313|consen 308 YSPLSKLLASGSSDRHIRLWDPRTGDGSVVSQSLIGHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRST-KAPLYDIA 386 (423)
T ss_pred cccccceeeecCCCCceeecCCCCCCCceeEEeeecchhhhhheecCCCCceEEEEEecCCeEEEEEeccC-CCcceeec
Confidence 9999999999999999999999864 4555678899999866665 4668999999999999999886 24789999
Q ss_pred ccccCeeEEEEecCCeeeecCCcceEEEEEeeCCcccccccC
Q 047325 326 GHTGPVKCLAVEEDRDSSSSTSSCAQRWIVYSGSLDKSDDDV 367 (368)
Q Consensus 326 ~h~~~v~~l~~~~~~~~~~~~~~~~~~w~l~sg~~D~~v~i~ 367 (368)
+|...|.++.|+..+ .+++||.|.+|||+
T Consensus 387 ~h~DKvl~vdW~~~~-------------~IvSGGaD~~l~i~ 415 (423)
T KOG0313|consen 387 GHNDKVLSVDWNEGG-------------LIVSGGADNKLRIF 415 (423)
T ss_pred cCCceEEEEeccCCc-------------eEEeccCcceEEEe
Confidence 999999999998765 48899999999987
No 30
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=100.00 E-value=9.8e-38 Score=231.27 Aligned_cols=279 Identities=17% Similarity=0.259 Sum_probs=232.6
Q ss_pred ccCcCCcEEEEEec--CCEEEEccCCCcEEEEcCC--cceecccCCCCCeeEEEEe--CCEEEEEeCCCeEEEEeecCCC
Q 047325 40 LVREEGHIYSLAAS--KDLLYTGSDSKNIRVWKNL--KEFCGFKASSGLVKAIVIS--GEKIFTGHQDGKIRVWKISPKN 113 (368)
Q Consensus 40 ~~~h~~~i~~~~~~--~~~l~s~~~dg~i~iw~~~--~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~vw~~~~~~ 113 (368)
++||+.+++.+.|+ |++|.+++.|.+..+|-.. +.+-++.+|.+.|.++..+ ...+++|+.|.++++||+++++
T Consensus 6 l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nGerlGty~GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~tGk 85 (327)
T KOG0643|consen 6 LQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGERLGTYDGHTGAVWCCDIDWDSKHLITGSADQTAKLWDVETGK 85 (327)
T ss_pred cccCccccceEEecCCCcEEEEecCCCCceEEEecCCceeeeecCCCceEEEEEecCCcceeeeccccceeEEEEcCCCc
Confidence 78999999999997 6799999999999999653 5577899999999999988 7899999999999999999998
Q ss_pred ccccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcCCCCEEEEEeC-----CCcEEEEEcc----
Q 047325 114 QSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCGLLYTASW-----DRTFKVWRIS---- 184 (368)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-----d~~i~iwd~~---- 184 (368)
+..... ...+|..+.|++++++++.+.. .+.|.++|++
T Consensus 86 ~la~~k---------------------------------~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~ 132 (327)
T KOG0643|consen 86 QLATWK---------------------------------TNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSS 132 (327)
T ss_pred EEEEee---------------------------------cCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChh
Confidence 655444 4578999999999998887753 4689999998
Q ss_pred ---CCeEEEEeecCCCceEEEEeCCCC-eEEEEcCCCeEEEEEcCCCCCCcccccceeeccccccEEEEEEcCCCCEEEE
Q 047325 185 ---DSKCLESVSAHDDAVNSVVSSSEG-LIFTGSADGTVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSSSRSIVYC 260 (368)
Q Consensus 185 ---~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~ 260 (368)
+.++...+..+...++.+-|.|-+ .|++|..||.|.+||.+++.. .+.....|...|+.++++|+..++++
T Consensus 133 ~~~s~ep~~kI~t~~skit~a~Wg~l~~~ii~Ghe~G~is~~da~~g~~-----~v~s~~~h~~~Ind~q~s~d~T~FiT 207 (327)
T KOG0643|consen 133 DIDSEEPYLKIPTPDSKITSALWGPLGETIIAGHEDGSISIYDARTGKE-----LVDSDEEHSSKINDLQFSRDRTYFIT 207 (327)
T ss_pred hhcccCceEEecCCccceeeeeecccCCEEEEecCCCcEEEEEcccCce-----eeechhhhccccccccccCCcceEEe
Confidence 456788888899999999999999 999999999999999997643 45566778889999999999999999
Q ss_pred ecCCCcEEEEeCCCccccceeeeccceEEEEEEeCCCEEEEeeCCCeEEEEecCCCc------------eeeeEeeeccc
Q 047325 261 GSSDGLVNFWEREKQLSHGGVLKGHKLAVLCLAAAGKLVFSGSADKTICVWRRDGAI------------HTCLSVLTGHT 328 (368)
Q Consensus 261 ~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~------------~~~~~~~~~h~ 328 (368)
++.|.+-++||.++-..++......+....+++|....++.|+.....-|=-..... .+.+..+++|-
T Consensus 208 ~s~Dttakl~D~~tl~v~Kty~te~PvN~aaisP~~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrvkGHF 287 (327)
T KOG0643|consen 208 GSKDTTAKLVDVRTLEVLKTYTTERPVNTAAISPLLDHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRVKGHF 287 (327)
T ss_pred cccCccceeeeccceeeEEEeeecccccceecccccceEEecCCceeeeeeeecccccchhhhHHHHHHHHHhccccccc
Confidence 999999999999988777666666677778888976666666544333222211111 24466778999
Q ss_pred cCeeEEEEecCCeeeecCCcceEEEEEeeCCcccccccCC
Q 047325 329 GPVKCLAVEEDRDSSSSTSSCAQRWIVYSGSLDKSDDDVH 368 (368)
Q Consensus 329 ~~v~~l~~~~~~~~~~~~~~~~~~w~l~sg~~D~~v~i~h 368 (368)
+||++++|+|+|. ..++|++||.||+-|
T Consensus 288 GPINsvAfhPdGk------------sYsSGGEDG~VR~h~ 315 (327)
T KOG0643|consen 288 GPINSVAFHPDGK------------SYSSGGEDGYVRLHH 315 (327)
T ss_pred cCcceeEECCCCc------------ccccCCCCceEEEEE
Confidence 9999999999999 788999999999865
No 31
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=1.5e-37 Score=260.12 Aligned_cols=325 Identities=21% Similarity=0.332 Sum_probs=247.5
Q ss_pred ccccCCCceeeeccCcCCcEEEEEecCC----EEEEccCCCcEEEEcCCcc---eecccCCCCCeeEEEEe--CCEEEEE
Q 047325 28 EENLPQNGLIGSLVREEGHIYSLAASKD----LLYTGSDSKNIRVWKNLKE---FCGFKASSGLVKAIVIS--GEKIFTG 98 (368)
Q Consensus 28 ~~~~~~~~~~~~~~~h~~~i~~~~~~~~----~l~s~~~dg~i~iw~~~~~---~~~~~~~~~~v~~~~~~--~~~l~s~ 98 (368)
..++..+...+.|+||.+.|.++.|+|+ .|++|..|+++++||+... +.....|.+.|+++.+. +..++++
T Consensus 131 VWdi~~~~~th~fkG~gGvVssl~F~~~~~~~lL~sg~~D~~v~vwnl~~~~tcl~~~~~H~S~vtsL~~~~d~~~~ls~ 210 (775)
T KOG0319|consen 131 VWDIKNGYCTHSFKGHGGVVSSLLFHPHWNRWLLASGATDGTVRVWNLNDKRTCLHTMILHKSAVTSLAFSEDSLELLSV 210 (775)
T ss_pred EEEeeCCEEEEEecCCCceEEEEEeCCccchhheeecCCCceEEEEEcccCchHHHHHHhhhhheeeeeeccCCceEEEe
Confidence 4556778889999999999999999877 7899999999999998732 45678899999999987 6678888
Q ss_pred eCCCeEEEEeecCCCccc----------------------------------------------cccCCccccceee---
Q 047325 99 HQDGKIRVWKISPKNQSV----------------------------------------------HKRAGTLPTLKDI--- 129 (368)
Q Consensus 99 ~~dg~i~vw~~~~~~~~~----------------------------------------------~~~~~~~~~~~~~--- 129 (368)
++|..+.+||+.+-+... .......+.....
T Consensus 211 ~RDkvi~vwd~~~~~~l~~lp~ye~~E~vv~l~~~~~~~~~~~~TaG~~g~~~~~d~es~~~~~~~~~~~~~e~~~~~~~ 290 (775)
T KOG0319|consen 211 GRDKVIIVWDLVQYKKLKTLPLYESLESVVRLREELGGKGEYIITAGGSGVVQYWDSESGKCVYKQRQSDSEEIDHLLAI 290 (775)
T ss_pred ccCcEEEEeehhhhhhhheechhhheeeEEEechhcCCcceEEEEecCCceEEEEecccchhhhhhccCCchhhhcceec
Confidence 888888888874322111 0000000000000
Q ss_pred ---------------eec-----------------------------------cCCCCceeEecccceeeeeecCCCEeE
Q 047325 130 ---------------FKS-----------------------------------SIKPSNYIEVRRHRTALWIRHSDAVSC 159 (368)
Q Consensus 130 ---------------~~~-----------------------------------~~~~~~~~~~~~~~~~~~~~~~~~v~~ 159 (368)
+.. ......++.........+.||.+.|.+
T Consensus 291 ~~~~~~l~vtaeQnl~l~d~~~l~i~k~ivG~ndEI~Dm~~lG~e~~~laVATNs~~lr~y~~~~~~c~ii~GH~e~vlS 370 (775)
T KOG0319|consen 291 ESMSQLLLVTAEQNLFLYDEDELTIVKQIVGYNDEILDMKFLGPEESHLAVATNSPELRLYTLPTSYCQIIPGHTEAVLS 370 (775)
T ss_pred cccCceEEEEccceEEEEEccccEEehhhcCCchhheeeeecCCccceEEEEeCCCceEEEecCCCceEEEeCchhheee
Confidence 000 000000112223334567899999999
Q ss_pred EEEcCCCCEEEEEeCCCcEEEEEccCC----eEEEEeecCCCceEEEEeCCCC--eEEEEcCCCeEEEEEcCCCCCCcc-
Q 047325 160 MSLDQDCGLLYTASWDRTFKVWRISDS----KCLESVSAHDDAVNSVVSSSEG--LIFTGSADGTVKVWKREQHGKGTK- 232 (368)
Q Consensus 160 ~~~~~~~~~l~~~~~d~~i~iwd~~~~----~~~~~~~~~~~~v~~~~~~~~~--~l~~~~~dg~i~i~d~~~~~~~~~- 232 (368)
+....+|.+|++|+.|.++++|.++.+ .++....+|...|.+++++..+ .|++++.|+++++|++........
T Consensus 371 L~~~~~g~llat~sKD~svilWr~~~~~~~~~~~a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~ 450 (775)
T KOG0319|consen 371 LDVWSSGDLLATGSKDKSVILWRLNNNCSKSLCVAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFP 450 (775)
T ss_pred eeecccCcEEEEecCCceEEEEEecCCcchhhhhhhhcccccccceeeecccCccEEEEecCCceEEEecCCCccccccc
Confidence 997777889999999999999987443 3456677899999999998777 999999999999999986322111
Q ss_pred --cccceeeccccccEEEEEEcCCCCEEEEecCCCcEEEEeCCCccccceeeeccceEEEEEEe--CCCEEEEeeCCCeE
Q 047325 233 --HSLAQTLLKQECAVTALVVSSSRSIVYCGSSDGLVNFWEREKQLSHGGVLKGHKLAVLCLAA--AGKLVFSGSADKTI 308 (368)
Q Consensus 233 --~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~~~~~dg~i 308 (368)
.........|...|++++++|+.+++++|+.|.+.++|+++. ......+.+|...+.++++ ..+.++++|.|++|
T Consensus 451 ~~~~~~~t~~aHdKdIN~Vaia~ndkLiAT~SqDktaKiW~le~-~~l~~vLsGH~RGvw~V~Fs~~dq~laT~SgD~Tv 529 (775)
T KOG0319|consen 451 IVLTCRYTERAHDKDINCVAIAPNDKLIATGSQDKTAKIWDLEQ-LRLLGVLSGHTRGVWCVSFSKNDQLLATCSGDKTV 529 (775)
T ss_pred ceehhhHHHHhhcccccceEecCCCceEEecccccceeeecccC-ceEEEEeeCCccceEEEEeccccceeEeccCCceE
Confidence 111224456889999999999999999999999999999995 4555889999988866654 67899999999999
Q ss_pred EEEecCCCceeeeEeeeccccCeeEEEEecCCeeeecCCcceEEEEEeeCCcccccccC
Q 047325 309 CVWRRDGAIHTCLSVLTGHTGPVKCLAVEEDRDSSSSTSSCAQRWIVYSGSLDKSDDDV 367 (368)
Q Consensus 309 ~iw~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~w~l~sg~~D~~v~i~ 367 (368)
+||.+.+. .+++++.||...|..+.|-.++. .|+|++.||-+|+|
T Consensus 530 KIW~is~f--SClkT~eGH~~aVlra~F~~~~~------------qliS~~adGliKlW 574 (775)
T KOG0319|consen 530 KIWSISTF--SCLKTFEGHTSAVLRASFIRNGK------------QLISAGADGLIKLW 574 (775)
T ss_pred EEEEeccc--eeeeeecCccceeEeeeeeeCCc------------EEEeccCCCcEEEE
Confidence 99999887 89999999999999999999999 56677777777766
No 32
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=2.6e-36 Score=253.41 Aligned_cols=318 Identities=23% Similarity=0.358 Sum_probs=243.6
Q ss_pred ccCCCceeeeccCcCCcEEEEEecCC--EEEEccCCCcEEEEcCCc--c--eecccCCCCCeeEEEEe--CCEEEEEeCC
Q 047325 30 NLPQNGLIGSLVREEGHIYSLAASKD--LLYTGSDSKNIRVWKNLK--E--FCGFKASSGLVKAIVIS--GEKIFTGHQD 101 (368)
Q Consensus 30 ~~~~~~~~~~~~~h~~~i~~~~~~~~--~l~s~~~dg~i~iw~~~~--~--~~~~~~~~~~v~~~~~~--~~~l~s~~~d 101 (368)
.+++..+.+++.+|.+.|.++.|+.+ +|++||.|-++|+|.+.. . ...+.+|...|.+..|. ...+++.+.|
T Consensus 131 ~~~pFvl~r~~~g~fddi~si~Ws~DSr~l~~gsrD~s~rl~~v~~~k~~~~~~l~gHkd~VvacfF~~~~~~l~tvskd 210 (893)
T KOG0291|consen 131 EFNPFVLHRTYLGHFDDITSIDWSDDSRLLVTGSRDLSARLFGVDGNKNLFTYALNGHKDYVVACFFGANSLDLYTVSKD 210 (893)
T ss_pred ccCcceEeeeecCCccceeEEEeccCCceEEeccccceEEEEEeccccccceEeccCCCcceEEEEeccCcceEEEEecC
Confidence 56777888999999999999999865 999999999999998763 2 45688999999999997 5679999999
Q ss_pred CeEEEEeecCCCcccccc--------------CCccccc----------------eeeeeccCCCCceeEecccceeee-
Q 047325 102 GKIRVWKISPKNQSVHKR--------------AGTLPTL----------------KDIFKSSIKPSNYIEVRRHRTALW- 150 (368)
Q Consensus 102 g~i~vw~~~~~~~~~~~~--------------~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~- 150 (368)
|.+.+|............ .+..... ..+.....++...+.........+
T Consensus 211 G~l~~W~~~~~P~~~~~~~kd~eg~~d~~~~~~~Eek~~~~~~~k~~k~~ln~~~~kvtaa~fH~~t~~lvvgFssG~f~ 290 (893)
T KOG0291|consen 211 GALFVWTCDLRPPELDKAEKDEEGSDDEEMDEDGEEKTHKIFWYKTKKHYLNQNSSKVTAAAFHKGTNLLVVGFSSGEFG 290 (893)
T ss_pred ceEEEEEecCCCcccccccccccccccccccccchhhhcceEEEEEEeeeecccccceeeeeccCCceEEEEEecCCeeE
Confidence 999999887331111110 0000000 001111111111111110000000
Q ss_pred -e-------ec-----CCCEeEEEEcCCCCEEEEEeCC-CcEEEEEccCCeEEEEeecCCCceEEEEeCCCC-eEEEEcC
Q 047325 151 -I-------RH-----SDAVSCMSLDQDCGLLYTASWD-RTFKVWRISDSKCLESVSAHDDAVNSVVSSSEG-LIFTGSA 215 (368)
Q Consensus 151 -~-------~~-----~~~v~~~~~~~~~~~l~~~~~d-~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~ 215 (368)
. -| ..+|..+.|+..|..|+.|+.. |.+.+|+..+..-+...++|...+++++++||| ++++|+.
T Consensus 291 LyelP~f~lih~LSis~~~I~t~~~N~tGDWiA~g~~klgQLlVweWqsEsYVlKQQgH~~~i~~l~YSpDgq~iaTG~e 370 (893)
T KOG0291|consen 291 LYELPDFNLIHSLSISDQKILTVSFNSTGDWIAFGCSKLGQLLVWEWQSESYVLKQQGHSDRITSLAYSPDGQLIATGAE 370 (893)
T ss_pred EEecCCceEEEEeecccceeeEEEecccCCEEEEcCCccceEEEEEeeccceeeeccccccceeeEEECCCCcEEEeccC
Confidence 0 02 2456777888888888888753 688999988888888889999999999999999 9999999
Q ss_pred CCeEEEEEcCCCCCCcccccceeeccccccEEEEEEcCCCCEEEEecCCCcEEEEeCCCccccceeeeccceEEEEEE--
Q 047325 216 DGTVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSSSRSIVYCGSSDGLVNFWEREKQLSHGGVLKGHKLAVLCLA-- 293 (368)
Q Consensus 216 dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~-- 293 (368)
||.|++||.+.+ .+..++..|...|+.+.|+..++.+++.+.||+|+.||+...........+.+..-.|++
T Consensus 371 DgKVKvWn~~Sg------fC~vTFteHts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRYrNfRTft~P~p~QfscvavD 444 (893)
T KOG0291|consen 371 DGKVKVWNTQSG------FCFVTFTEHTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRYRNFRTFTSPEPIQFSCVAVD 444 (893)
T ss_pred CCcEEEEeccCc------eEEEEeccCCCceEEEEEEecCCEEEEeecCCeEEeeeecccceeeeecCCCceeeeEEEEc
Confidence 999999999876 578899999999999999999999999999999999999876666444444444444555
Q ss_pred eCCCEEEEeeCCCe-EEEEecCCCceeeeEeeeccccCeeEEEEecCCeeeecCCcceEEEEEeeCCcccccccC
Q 047325 294 AAGKLVFSGSADKT-ICVWRRDGAIHTCLSVLTGHTGPVKCLAVEEDRDSSSSTSSCAQRWIVYSGSLDKSDDDV 367 (368)
Q Consensus 294 ~~~~~l~~~~~dg~-i~iw~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~w~l~sg~~D~~v~i~ 367 (368)
|.|.++++|+.|.- |.+|++.++ +.+-.+.||++||.+++|+|++. .|+|||.|++||+|
T Consensus 445 ~sGelV~AG~~d~F~IfvWS~qTG--qllDiLsGHEgPVs~l~f~~~~~------------~LaS~SWDkTVRiW 505 (893)
T KOG0291|consen 445 PSGELVCAGAQDSFEIFVWSVQTG--QLLDILSGHEGPVSGLSFSPDGS------------LLASGSWDKTVRIW 505 (893)
T ss_pred CCCCEEEeeccceEEEEEEEeecC--eeeehhcCCCCcceeeEEccccC------------eEEeccccceEEEE
Confidence 55999999998875 999999887 88889999999999999999999 78888888888888
No 33
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=100.00 E-value=4.2e-37 Score=230.74 Aligned_cols=242 Identities=17% Similarity=0.237 Sum_probs=206.9
Q ss_pred eecccCCCCCeeEEEEe--CCEEEEEeCCCeEEEEeecCCCccccccCCccccceeeeeccCCCCceeEecccceeeeee
Q 047325 75 FCGFKASSGLVKAIVIS--GEKIFTGHQDGKIRVWKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIR 152 (368)
Q Consensus 75 ~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (368)
...+++|.+.|.++.|. .++|++++.||.+.|||.-+..+......
T Consensus 48 rr~LkGH~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~haipl-------------------------------- 95 (343)
T KOG0286|consen 48 RRTLKGHLNKIYAMDWSTDSRRIVSASQDGKLIVWDSFTTNKVHAIPL-------------------------------- 95 (343)
T ss_pred EEEecccccceeeeEecCCcCeEEeeccCCeEEEEEcccccceeEEec--------------------------------
Confidence 46789999999999998 77999999999999999987765443332
Q ss_pred cCCCEeEEEEcCCCCEEEEEeCCCcEEEEEccCC------eEEEEeecCCCceEEEEeCCCCeEEEEcCCCeEEEEEcCC
Q 047325 153 HSDAVSCMSLDQDCGLLYTASWDRTFKVWRISDS------KCLESVSAHDDAVNSVVSSSEGLIFTGSADGTVKVWKREQ 226 (368)
Q Consensus 153 ~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~------~~~~~~~~~~~~v~~~~~~~~~~l~~~~~dg~i~i~d~~~ 226 (368)
....|..++|+|.++++++|+.|+...||++.+. +..+.+.+|.+.+.|+.|.+|+.|++++.|.+..+||+++
T Consensus 96 ~s~WVMtCA~sPSg~~VAcGGLdN~Csiy~ls~~d~~g~~~v~r~l~gHtgylScC~f~dD~~ilT~SGD~TCalWDie~ 175 (343)
T KOG0286|consen 96 PSSWVMTCAYSPSGNFVACGGLDNKCSIYPLSTRDAEGNVRVSRELAGHTGYLSCCRFLDDNHILTGSGDMTCALWDIET 175 (343)
T ss_pred CceeEEEEEECCCCCeEEecCcCceeEEEecccccccccceeeeeecCccceeEEEEEcCCCceEecCCCceEEEEEccc
Confidence 5578999999999999999999999999999865 3556788999999999999999999999999999999998
Q ss_pred CCCCcccccceeeccccccEEEEEEcC-CCCEEEEecCCCcEEEEeCCCccccceeeeccceEE--EEEEeCCCEEEEee
Q 047325 227 HGKGTKHSLAQTLLKQECAVTALVVSS-SRSIVYCGSSDGLVNFWEREKQLSHGGVLKGHKLAV--LCLAAAGKLVFSGS 303 (368)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~~ 303 (368)
+ +....+.+|.+.|.++.++| +++.+++|+.|+..++||++.+... +.+.+|...| ++|.|+|.-+++|+
T Consensus 176 g------~~~~~f~GH~gDV~slsl~p~~~ntFvSg~cD~~aklWD~R~~~c~-qtF~ghesDINsv~ffP~G~afatGS 248 (343)
T KOG0286|consen 176 G------QQTQVFHGHTGDVMSLSLSPSDGNTFVSGGCDKSAKLWDVRSGQCV-QTFEGHESDINSVRFFPSGDAFATGS 248 (343)
T ss_pred c------eEEEEecCCcccEEEEecCCCCCCeEEecccccceeeeeccCccee-EeecccccccceEEEccCCCeeeecC
Confidence 7 35788899999999999999 9999999999999999999998554 7888998877 56678999999999
Q ss_pred CCCeEEEEecCCCceeeeEeeeccccCeeEEEEecCCeeeecCCcceEEEEEeeCCcccccccC
Q 047325 304 ADKTICVWRRDGAIHTCLSVLTGHTGPVKCLAVEEDRDSSSSTSSCAQRWIVYSGSLDKSDDDV 367 (368)
Q Consensus 304 ~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~w~l~sg~~D~~v~i~ 367 (368)
+|++.++||++......++.-..-..+|++++||..|+ +|+.|..|.++.+|
T Consensus 249 DD~tcRlyDlRaD~~~a~ys~~~~~~gitSv~FS~SGR------------lLfagy~d~~c~vW 300 (343)
T KOG0286|consen 249 DDATCRLYDLRADQELAVYSHDSIICGITSVAFSKSGR------------LLFAGYDDFTCNVW 300 (343)
T ss_pred CCceeEEEeecCCcEEeeeccCcccCCceeEEEccccc------------EEEeeecCCceeEe
Confidence 99999999999874444444444556899999999999 45555555555554
No 34
>PLN00181 protein SPA1-RELATED; Provisional
Probab=100.00 E-value=2e-36 Score=280.10 Aligned_cols=278 Identities=15% Similarity=0.235 Sum_probs=220.7
Q ss_pred eccCcCCcEEEEEecCC--EEEEccCCCcEEEEcCCcce----------ecccCCCCCeeEEEEe---CCEEEEEeCCCe
Q 047325 39 SLVREEGHIYSLAASKD--LLYTGSDSKNIRVWKNLKEF----------CGFKASSGLVKAIVIS---GEKIFTGHQDGK 103 (368)
Q Consensus 39 ~~~~h~~~i~~~~~~~~--~l~s~~~dg~i~iw~~~~~~----------~~~~~~~~~v~~~~~~---~~~l~s~~~dg~ 103 (368)
.+..|.+.|.+++|+++ +||+|+.|+.|+|||..... ..+ .+...+.+++|+ +.+|++++.||+
T Consensus 478 ~~~~~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~-~~~~~v~~l~~~~~~~~~las~~~Dg~ 556 (793)
T PLN00181 478 DLLNSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVEL-ASRSKLSGICWNSYIKSQVASSNFEGV 556 (793)
T ss_pred cccCCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCcccccccccccceEEe-cccCceeeEEeccCCCCEEEEEeCCCe
Confidence 35569999999999854 99999999999999975311 112 234678899986 679999999999
Q ss_pred EEEEeecCCCccccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcC-CCCEEEEEeCCCcEEEEE
Q 047325 104 IRVWKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQ-DCGLLYTASWDRTFKVWR 182 (368)
Q Consensus 104 i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~iwd 182 (368)
|++||+.+++... .+.+|...|++++|+| ++.+|++|+.|+.|++||
T Consensus 557 v~lWd~~~~~~~~--------------------------------~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd 604 (793)
T PLN00181 557 VQVWDVARSQLVT--------------------------------EMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWS 604 (793)
T ss_pred EEEEECCCCeEEE--------------------------------EecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEE
Confidence 9999998765322 2334999999999997 788999999999999999
Q ss_pred ccCCeEEEEeecCCCceEEEEeCC-CC-eEEEEcCCCeEEEEEcCCCCCCcccccceeeccccccEEEEEEcCCCCEEEE
Q 047325 183 ISDSKCLESVSAHDDAVNSVVSSS-EG-LIFTGSADGTVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSSSRSIVYC 260 (368)
Q Consensus 183 ~~~~~~~~~~~~~~~~v~~~~~~~-~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~ 260 (368)
+++++.+..+..+ ..+.++.|++ ++ .+++|+.||.|++||++.... ....+.+|...|.++.|. ++.+|++
T Consensus 605 ~~~~~~~~~~~~~-~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~~-----~~~~~~~h~~~V~~v~f~-~~~~lvs 677 (793)
T PLN00181 605 INQGVSIGTIKTK-ANICCVQFPSESGRSLAFGSADHKVYYYDLRNPKL-----PLCTMIGHSKTVSYVRFV-DSSTLVS 677 (793)
T ss_pred CCCCcEEEEEecC-CCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCCc-----cceEecCCCCCEEEEEEe-CCCEEEE
Confidence 9999998888754 6789999954 56 999999999999999986421 345567899999999997 6789999
Q ss_pred ecCCCcEEEEeCCCcc-----ccceeeeccceEE--EEEEeCCCEEEEeeCCCeEEEEecCCCceeeeE-----------
Q 047325 261 GSSDGLVNFWEREKQL-----SHGGVLKGHKLAV--LCLAAAGKLVFSGSADKTICVWRRDGAIHTCLS----------- 322 (368)
Q Consensus 261 ~~~dg~i~i~d~~~~~-----~~~~~~~~~~~~~--~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~----------- 322 (368)
++.|+.|++||++... .....+.+|...+ +++++++.+|++|+.|+.|++|+..........
T Consensus 678 ~s~D~~ikiWd~~~~~~~~~~~~l~~~~gh~~~i~~v~~s~~~~~lasgs~D~~v~iw~~~~~~~~~s~~~~~~~~~~~~ 757 (793)
T PLN00181 678 SSTDNTLKLWDLSMSISGINETPLHSFMGHTNVKNFVGLSVSDGYIATGSETNEVFVYHKAFPMPVLSYKFKTIDPVSGL 757 (793)
T ss_pred EECCCEEEEEeCCCCccccCCcceEEEcCCCCCeeEEEEcCCCCEEEEEeCCCEEEEEECCCCCceEEEecccCCccccc
Confidence 9999999999997531 2334566776654 667788999999999999999997644211111
Q ss_pred eeeccccCeeEEEEecCCeeeecCCcceEEEEEeeCCcccccccCC
Q 047325 323 VLTGHTGPVKCLAVEEDRDSSSSTSSCAQRWIVYSGSLDKSDDDVH 368 (368)
Q Consensus 323 ~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~w~l~sg~~D~~v~i~h 368 (368)
....|...|.+++|+|++. .|++|+.||.|++|.
T Consensus 758 ~~~~~~~~V~~v~ws~~~~------------~lva~~~dG~I~i~~ 791 (793)
T PLN00181 758 EVDDASQFISSVCWRGQSS------------TLVAANSTGNIKILE 791 (793)
T ss_pred ccCCCCcEEEEEEEcCCCC------------eEEEecCCCcEEEEe
Confidence 1233556799999999999 788999999999883
No 35
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=100.00 E-value=1.4e-38 Score=244.51 Aligned_cols=245 Identities=22% Similarity=0.366 Sum_probs=214.9
Q ss_pred CCCceeeeccCcCCcEEEEEecCCEEEEccCCCcEEEEcCCc--ceecccCCCCCeeEEEEeCCEEEEEeCCCeEEEEee
Q 047325 32 PQNGLIGSLVREEGHIYSLAASKDLLYTGSDSKNIRVWKNLK--EFCGFKASSGLVKAIVISGEKIFTGHQDGKIRVWKI 109 (368)
Q Consensus 32 ~~~~~~~~~~~h~~~i~~~~~~~~~l~s~~~dg~i~iw~~~~--~~~~~~~~~~~v~~~~~~~~~l~s~~~dg~i~vw~~ 109 (368)
.....++.+.||++.|.|+.|+...+++|+.|.+|++||..+ .+.++-+|...|..+.|+++++++++.|.++.+||+
T Consensus 225 n~~~c~~~L~GHtGSVLCLqyd~rviisGSSDsTvrvWDv~tge~l~tlihHceaVLhlrf~ng~mvtcSkDrsiaVWdm 304 (499)
T KOG0281|consen 225 NSLECLKILTGHTGSVLCLQYDERVIVSGSSDSTVRVWDVNTGEPLNTLIHHCEAVLHLRFSNGYMVTCSKDRSIAVWDM 304 (499)
T ss_pred ccHHHHHhhhcCCCcEEeeeccceEEEecCCCceEEEEeccCCchhhHHhhhcceeEEEEEeCCEEEEecCCceeEEEec
Confidence 344567789999999999999999999999999999999875 467889999999999999999999999999999999
Q ss_pred cCCCccccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcCCCCEEEEEeCCCcEEEEEccCCeEE
Q 047325 110 SPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCGLLYTASWDRTFKVWRISDSKCL 189 (368)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~ 189 (368)
........ ..++.||...|+.+.|+. +++++++.|.+|++|++.+++.+
T Consensus 305 ~sps~it~-----------------------------rrVLvGHrAaVNvVdfd~--kyIVsASgDRTikvW~~st~efv 353 (499)
T KOG0281|consen 305 ASPTDITL-----------------------------RRVLVGHRAAVNVVDFDD--KYIVSASGDRTIKVWSTSTCEFV 353 (499)
T ss_pred cCchHHHH-----------------------------HHHHhhhhhheeeecccc--ceEEEecCCceEEEEeccceeee
Confidence 87652211 234567999999999964 59999999999999999999999
Q ss_pred EEeecCCCceEEEEeCCCCeEEEEcCCCeEEEEEcCCCCCCcccccceeeccccccEEEEEEcCCCCEEEEecCCCcEEE
Q 047325 190 ESVSAHDDAVNSVVSSSEGLIFTGSADGTVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSSSRSIVYCGSSDGLVNF 269 (368)
Q Consensus 190 ~~~~~~~~~v~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i 269 (368)
.++.+|...|.|+.+. +.++++|+.|.+|++||+..+ .+++.+.+|+.-|.++.| +.+.+++|..||+|++
T Consensus 354 Rtl~gHkRGIAClQYr-~rlvVSGSSDntIRlwdi~~G------~cLRvLeGHEeLvRciRF--d~krIVSGaYDGkikv 424 (499)
T KOG0281|consen 354 RTLNGHKRGIACLQYR-DRLVVSGSSDNTIRLWDIECG------ACLRVLEGHEELVRCIRF--DNKRIVSGAYDGKIKV 424 (499)
T ss_pred hhhhcccccceehhcc-CeEEEecCCCceEEEEecccc------HHHHHHhchHHhhhheee--cCceeeeccccceEEE
Confidence 9999999999988763 338999999999999999877 578899999999999999 4678999999999999
Q ss_pred EeCCCcccc--------ceeeeccceEEEEEEeCCCEEEEeeCCCeEEEEecCCC
Q 047325 270 WEREKQLSH--------GGVLKGHKLAVLCLAAAGKLVFSGSADKTICVWRRDGA 316 (368)
Q Consensus 270 ~d~~~~~~~--------~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~ 316 (368)
||+.....+ ......|.+.|..+.+|...+++++.|.+|.|||+..+
T Consensus 425 Wdl~aaldpra~~~~~Cl~~lv~hsgRVFrLQFD~fqIvsssHddtILiWdFl~~ 479 (499)
T KOG0281|consen 425 WDLQAALDPRAPASTLCLRTLVEHSGRVFRLQFDEFQIISSSHDDTILIWDFLNG 479 (499)
T ss_pred EecccccCCcccccchHHHhhhhccceeEEEeecceEEEeccCCCeEEEEEcCCC
Confidence 999865443 23455789999999999999999999999999999765
No 36
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=100.00 E-value=5.2e-38 Score=230.69 Aligned_cols=275 Identities=20% Similarity=0.297 Sum_probs=231.1
Q ss_pred eccCcCCcEEEEEecC---C--EEEEccCCCcEEEEcCC--cceecccCCCCCeeEEEEe--CCEEEEEeCCCeEEEEee
Q 047325 39 SLVREEGHIYSLAASK---D--LLYTGSDSKNIRVWKNL--KEFCGFKASSGLVKAIVIS--GEKIFTGHQDGKIRVWKI 109 (368)
Q Consensus 39 ~~~~h~~~i~~~~~~~---~--~l~s~~~dg~i~iw~~~--~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~vw~~ 109 (368)
+-.||+.+|..++|++ + +|++++.||.-.+-+-. .-+-+|.+|.+.|.+...+ ...-++++.|-+-++||.
T Consensus 9 ~c~ghtrpvvdl~~s~itp~g~flisa~kd~~pmlr~g~tgdwigtfeghkgavw~~~l~~na~~aasaaadftakvw~a 88 (334)
T KOG0278|consen 9 TCHGHTRPVVDLAFSPITPDGYFLISASKDGKPMLRNGDTGDWIGTFEGHKGAVWSATLNKNATRAASAAADFTAKVWDA 88 (334)
T ss_pred EEcCCCcceeEEeccCCCCCceEEEEeccCCCchhccCCCCCcEEeeeccCcceeeeecCchhhhhhhhcccchhhhhhh
Confidence 3569999999999973 3 89999999987776544 4477899999999999988 346778899999999999
Q ss_pred cCCCccccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcCCCCEEEEEeCCCcEEEEEccCCe-E
Q 047325 110 SPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCGLLYTASWDRTFKVWRISDSK-C 188 (368)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~-~ 188 (368)
-++..+..+. |..-|..++|+.|.++|++|+.+..+++||++..+ +
T Consensus 89 ~tgdelhsf~---------------------------------hkhivk~~af~~ds~~lltgg~ekllrvfdln~p~Ap 135 (334)
T KOG0278|consen 89 VTGDELHSFE---------------------------------HKHIVKAVAFSQDSNYLLTGGQEKLLRVFDLNRPKAP 135 (334)
T ss_pred hhhhhhhhhh---------------------------------hhheeeeEEecccchhhhccchHHHhhhhhccCCCCC
Confidence 9887655544 88899999999999999999999999999998754 5
Q ss_pred EEEeecCCCceEEEEeCCCC-eEEEEcCCCeEEEEEcCCCCCCcccccceeeccccccEEEEEEcCCCCEEEEecCCCcE
Q 047325 189 LESVSAHDDAVNSVVSSSEG-LIFTGSADGTVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSSSRSIVYCGSSDGLV 267 (368)
Q Consensus 189 ~~~~~~~~~~v~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i 267 (368)
...+.+|.+.|..+.|.... .+++.+.|++||+||.+++.. .+.+ ....+|+++.++++|++|.++. .+.|
T Consensus 136 p~E~~ghtg~Ir~v~wc~eD~~iLSSadd~tVRLWD~rTgt~------v~sL-~~~s~VtSlEvs~dG~ilTia~-gssV 207 (334)
T KOG0278|consen 136 PKEISGHTGGIRTVLWCHEDKCILSSADDKTVRLWDHRTGTE------VQSL-EFNSPVTSLEVSQDGRILTIAY-GSSV 207 (334)
T ss_pred chhhcCCCCcceeEEEeccCceEEeeccCCceEEEEeccCcE------EEEE-ecCCCCcceeeccCCCEEEEec-Ccee
Confidence 67888999999999987766 888889999999999998732 3332 3456799999999999887764 5679
Q ss_pred EEEeCCCccccceeeeccceEEEEEEeCCCEEEEeeCCCeEEEEecCCCceeeeEee-eccccCeeEEEEecCCeeeecC
Q 047325 268 NFWEREKQLSHGGVLKGHKLAVLCLAAAGKLVFSGSADKTICVWRRDGAIHTCLSVL-TGHTGPVKCLAVEEDRDSSSST 346 (368)
Q Consensus 268 ~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~-~~h~~~v~~l~~~~~~~~~~~~ 346 (368)
.+||..+-..+............+++|+...+++|++|..++.||+.++ ..+..+ ++|.++|.++.|+|+|.
T Consensus 208 ~Fwdaksf~~lKs~k~P~nV~SASL~P~k~~fVaGged~~~~kfDy~Tg--eEi~~~nkgh~gpVhcVrFSPdGE----- 280 (334)
T KOG0278|consen 208 KFWDAKSFGLLKSYKMPCNVESASLHPKKEFFVAGGEDFKVYKFDYNTG--EEIGSYNKGHFGPVHCVRFSPDGE----- 280 (334)
T ss_pred EEeccccccceeeccCccccccccccCCCceEEecCcceEEEEEeccCC--ceeeecccCCCCceEEEEECCCCc-----
Confidence 9999998776655555566666889999999999999999999999987 445554 89999999999999999
Q ss_pred CcceEEEEEeeCCcccccccCC
Q 047325 347 SSCAQRWIVYSGSLDKSDDDVH 368 (368)
Q Consensus 347 ~~~~~~w~l~sg~~D~~v~i~h 368 (368)
..++||+||+||+|.
T Consensus 281 -------~yAsGSEDGTirlWQ 295 (334)
T KOG0278|consen 281 -------LYASGSEDGTIRLWQ 295 (334)
T ss_pred -------eeeccCCCceEEEEE
Confidence 788899999999984
No 37
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=1.9e-37 Score=239.12 Aligned_cols=284 Identities=18% Similarity=0.237 Sum_probs=234.4
Q ss_pred cccCCCceeeeccCcCCcEEEEEecCC---EEEEccCCCcEEEEcCCc--ceecccCCCCCeeEEEEeCCEEEEEeCCCe
Q 047325 29 ENLPQNGLIGSLVREEGHIYSLAASKD---LLYTGSDSKNIRVWKNLK--EFCGFKASSGLVKAIVISGEKIFTGHQDGK 103 (368)
Q Consensus 29 ~~~~~~~~~~~~~~h~~~i~~~~~~~~---~l~s~~~dg~i~iw~~~~--~~~~~~~~~~~v~~~~~~~~~l~s~~~dg~ 103 (368)
+.+-..+++..|.||.+.|.|++-+++ .+++|+.||.|++||+.+ ....++.|.+.|..|++..+.+++++.|.+
T Consensus 51 eR~fakPFv~~L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~~~f~AH~G~V~Gi~v~~~~~~tvgdDKt 130 (433)
T KOG0268|consen 51 ERVFAKPFVGSLDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRECIRTFKAHEGLVRGICVTQTSFFTVGDDKT 130 (433)
T ss_pred HHHhhccchhhccccccccchhhcCcchhhhhhccccCceEEEEehhhhhhhheeecccCceeeEEecccceEEecCCcc
Confidence 345667899999999999999999877 689999999999999985 466899999999999999999999999999
Q ss_pred EEEEeecCCCccccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcCCCCEEEEEeCCCcEEEEEc
Q 047325 104 IRVWKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCGLLYTASWDRTFKVWRI 183 (368)
Q Consensus 104 i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~ 183 (368)
|+.|.++... .... .....+..+.-+..++.+++||. .|.|||.
T Consensus 131 vK~wk~~~~p-~~ti---------------------------------lg~s~~~gIdh~~~~~~FaTcGe--~i~IWD~ 174 (433)
T KOG0268|consen 131 VKQWKIDGPP-LHTI---------------------------------LGKSVYLGIDHHRKNSVFATCGE--QIDIWDE 174 (433)
T ss_pred eeeeeccCCc-ceee---------------------------------eccccccccccccccccccccCc--eeeeccc
Confidence 9999987631 0000 03455677777777788999986 5999999
Q ss_pred cCCeEEEEeecCCCceEEEEeCCCC--eEEEEcCCCeEEEEEcCCCCCCcccccceeeccccccEEEEEEcCCCCEEEEe
Q 047325 184 SDSKCLESVSAHDDAVNSVVSSSEG--LIFTGSADGTVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSSSRSIVYCG 261 (368)
Q Consensus 184 ~~~~~~~~~~~~~~~v~~~~~~~~~--~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~ 261 (368)
....++..+.-....|.++.|+|.. .|++++.|+.|.+||+++... +.... ....-+.|+|+|+.-.+++|
T Consensus 175 ~R~~Pv~smswG~Dti~svkfNpvETsILas~~sDrsIvLyD~R~~~P------l~KVi-~~mRTN~IswnPeafnF~~a 247 (433)
T KOG0268|consen 175 QRDNPVSSMSWGADSISSVKFNPVETSILASCASDRSIVLYDLRQASP------LKKVI-LTMRTNTICWNPEAFNFVAA 247 (433)
T ss_pred ccCCccceeecCCCceeEEecCCCcchheeeeccCCceEEEecccCCc------cceee-eeccccceecCccccceeec
Confidence 9999999999888899999999987 889999999999999998743 22221 23345789999988889999
Q ss_pred cCCCcEEEEeCCCccccceeeeccceEEEEE--EeCCCEEEEeeCCCeEEEEecCCCceeeeEeeeccccCeeEEEEecC
Q 047325 262 SSDGLVNFWEREKQLSHGGVLKGHKLAVLCL--AAAGKLVFSGSADKTICVWRRDGAIHTCLSVLTGHTGPVKCLAVEED 339 (368)
Q Consensus 262 ~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~--~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~l~~~~~ 339 (368)
++|..++.||++.-..+.....+|...++++ +|.|+-+++||.|.+|+||..+.+...-+.- ...-+.|.++.|+-|
T Consensus 248 ~ED~nlY~~DmR~l~~p~~v~~dhvsAV~dVdfsptG~EfvsgsyDksIRIf~~~~~~SRdiYh-tkRMq~V~~Vk~S~D 326 (433)
T KOG0268|consen 248 NEDHNLYTYDMRNLSRPLNVHKDHVSAVMDVDFSPTGQEFVSGSYDKSIRIFPVNHGHSRDIYH-TKRMQHVFCVKYSMD 326 (433)
T ss_pred cccccceehhhhhhcccchhhcccceeEEEeccCCCcchhccccccceEEEeecCCCcchhhhh-HhhhheeeEEEEecc
Confidence 9999999999998888888899999999665 5679999999999999999887652222211 112356999999999
Q ss_pred CeeeecCCcceEEEEEeeCCcccccccCC
Q 047325 340 RDSSSSTSSCAQRWIVYSGSLDKSDDDVH 368 (368)
Q Consensus 340 ~~~~~~~~~~~~~w~l~sg~~D~~v~i~h 368 (368)
.+ ++++||+|++||+|.
T Consensus 327 sk------------yi~SGSdd~nvRlWk 343 (433)
T KOG0268|consen 327 SK------------YIISGSDDGNVRLWK 343 (433)
T ss_pred cc------------EEEecCCCcceeeee
Confidence 99 799999999999994
No 38
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=6.9e-35 Score=244.94 Aligned_cols=281 Identities=20% Similarity=0.319 Sum_probs=229.2
Q ss_pred ccccCCCceeeeccCcCCcEEEEEec--CCEEEEccCC-CcEEEEcCCcc--eecccCCCCCeeEEEEe--CCEEEEEeC
Q 047325 28 EENLPQNGLIGSLVREEGHIYSLAAS--KDLLYTGSDS-KNIRVWKNLKE--FCGFKASSGLVKAIVIS--GEKIFTGHQ 100 (368)
Q Consensus 28 ~~~~~~~~~~~~~~~h~~~i~~~~~~--~~~l~s~~~d-g~i~iw~~~~~--~~~~~~~~~~v~~~~~~--~~~l~s~~~ 100 (368)
..++|...+++.+.--..+|..++++ |+.||.|+.. |.+-||+...+ +...++|...+++++++ |+++++|+.
T Consensus 291 LyelP~f~lih~LSis~~~I~t~~~N~tGDWiA~g~~klgQLlVweWqsEsYVlKQQgH~~~i~~l~YSpDgq~iaTG~e 370 (893)
T KOG0291|consen 291 LYELPDFNLIHSLSISDQKILTVSFNSTGDWIAFGCSKLGQLLVWEWQSESYVLKQQGHSDRITSLAYSPDGQLIATGAE 370 (893)
T ss_pred EEecCCceEEEEeecccceeeEEEecccCCEEEEcCCccceEEEEEeeccceeeeccccccceeeEEECCCCcEEEeccC
Confidence 56789999999998888999999998 8888888765 89999998765 44567899999999998 779999999
Q ss_pred CCeEEEEeecCCCccccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcCCCCEEEEEeCCCcEEE
Q 047325 101 DGKIRVWKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCGLLYTASWDRTFKV 180 (368)
Q Consensus 101 dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i 180 (368)
||.|+|||...+-+... +..|++.|+.+.|+..++.+++++.||+|+.
T Consensus 371 DgKVKvWn~~SgfC~vT--------------------------------FteHts~Vt~v~f~~~g~~llssSLDGtVRA 418 (893)
T KOG0291|consen 371 DGKVKVWNTQSGFCFVT--------------------------------FTEHTSGVTAVQFTARGNVLLSSSLDGTVRA 418 (893)
T ss_pred CCcEEEEeccCceEEEE--------------------------------eccCCCceEEEEEEecCCEEEEeecCCeEEe
Confidence 99999999988765333 3449999999999999999999999999999
Q ss_pred EEccCCeEEEEeecCC-CceEEEEeCCCC-eEEEEcCCC-eEEEEEcCCCCCCcccccceeeccccccEEEEEEcCCCCE
Q 047325 181 WRISDSKCLESVSAHD-DAVNSVVSSSEG-LIFTGSADG-TVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSSSRSI 257 (368)
Q Consensus 181 wd~~~~~~~~~~~~~~-~~v~~~~~~~~~-~l~~~~~dg-~i~i~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 257 (368)
||+...+.-+++..+. ....|++..|.| .+++|+.|. .|.+|+++++ +.+..+.+|+++|.+++|+|.++.
T Consensus 419 wDlkRYrNfRTft~P~p~QfscvavD~sGelV~AG~~d~F~IfvWS~qTG------qllDiLsGHEgPVs~l~f~~~~~~ 492 (893)
T KOG0291|consen 419 WDLKRYRNFRTFTSPEPIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTG------QLLDILSGHEGPVSGLSFSPDGSL 492 (893)
T ss_pred eeecccceeeeecCCCceeeeEEEEcCCCCEEEeeccceEEEEEEEeecC------eeeehhcCCCCcceeeEEccccCe
Confidence 9999999998887654 356788999999 666777665 6999999987 467888999999999999999999
Q ss_pred EEEecCCCcEEEEeCCCccccc-eeeeccceEEEEEEeCCCEEEEeeCCCeEEEEecCCCcee-----------------
Q 047325 258 VYCGSSDGLVNFWEREKQLSHG-GVLKGHKLAVLCLAAAGKLVFSGSADKTICVWRRDGAIHT----------------- 319 (368)
Q Consensus 258 l~~~~~dg~i~i~d~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~----------------- 319 (368)
|++++.|.+|++||+-...... .....|...-.+|.|+|+.|+++.-||.|.+||.......
T Consensus 493 LaS~SWDkTVRiW~if~s~~~vEtl~i~sdvl~vsfrPdG~elaVaTldgqItf~d~~~~~q~~~IdgrkD~~~gR~~~D 572 (893)
T KOG0291|consen 493 LASGSWDKTVRIWDIFSSSGTVETLEIRSDVLAVSFRPDGKELAVATLDGQITFFDIKEAVQVGSIDGRKDLSGGRKETD 572 (893)
T ss_pred EEeccccceEEEEEeeccCceeeeEeeccceeEEEEcCCCCeEEEEEecceEEEEEhhhceeeccccchhhccccccccc
Confidence 9999999999999986543322 2333455556788899999999999999999997643111
Q ss_pred -eeEeeeccccCeeEEEEecCCeeeecC
Q 047325 320 -CLSVLTGHTGPVKCLAVEEDRDSSSST 346 (368)
Q Consensus 320 -~~~~~~~h~~~v~~l~~~~~~~~~~~~ 346 (368)
....-.......+.+++++||..+.++
T Consensus 573 ~~ta~~sa~~K~Ftti~ySaDG~~IlAg 600 (893)
T KOG0291|consen 573 RITAENSAKGKTFTTICYSADGKCILAG 600 (893)
T ss_pred eeehhhcccCCceEEEEEcCCCCEEEec
Confidence 001111234579999999999954444
No 39
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=3e-36 Score=248.08 Aligned_cols=240 Identities=23% Similarity=0.335 Sum_probs=216.0
Q ss_pred cccCCCCCeeEEEEe--CCEEEEEeCCCeEEEEeecCCCccccccCCccccceeeeeccCCCCceeEecccceeeeeecC
Q 047325 77 GFKASSGLVKAIVIS--GEKIFTGHQDGKIRVWKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHS 154 (368)
Q Consensus 77 ~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (368)
.+..+...|.++.++ ...++++-.+|.|.||+.++......+.. ..
T Consensus 8 k~~~rSdRVKsVd~HPtePw~la~LynG~V~IWnyetqtmVksfeV--------------------------------~~ 55 (794)
T KOG0276|consen 8 KFQSRSDRVKSVDFHPTEPWILAALYNGDVQIWNYETQTMVKSFEV--------------------------------SE 55 (794)
T ss_pred HhhccCCceeeeecCCCCceEEEeeecCeeEEEecccceeeeeeee--------------------------------cc
Confidence 455688899999998 56888999999999999998775554443 55
Q ss_pred CCEeEEEEcCCCCEEEEEeCCCcEEEEEccCCeEEEEeecCCCceEEEEeCCCC-eEEEEcCCCeEEEEEcCCCCCCccc
Q 047325 155 DAVSCMSLDQDCGLLYTASWDRTFKVWRISDSKCLESVSAHDDAVNSVVSSSEG-LIFTGSADGTVKVWKREQHGKGTKH 233 (368)
Q Consensus 155 ~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~ 233 (368)
.+|++..|-+..+.+++|+.|..|++|+..+++.+..+.+|...|++++.+|.. ++++++.|-.|++||.+. ..
T Consensus 56 ~PvRa~kfiaRknWiv~GsDD~~IrVfnynt~ekV~~FeAH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~-----~w 130 (794)
T KOG0276|consen 56 VPVRAAKFIARKNWIVTGSDDMQIRVFNYNTGEKVKTFEAHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWEN-----EW 130 (794)
T ss_pred cchhhheeeeccceEEEecCCceEEEEecccceeeEEeeccccceeeeeecCCCCeEEecCCccEEEEeeccC-----ce
Confidence 678889999988999999999999999999999999999999999999999998 999999999999999984 34
Q ss_pred ccceeeccccccEEEEEEcC-CCCEEEEecCCCcEEEEeCCCccccceeeeccceEEEEEEe----CCCEEEEeeCCCeE
Q 047325 234 SLAQTLLKQECAVTALVVSS-SRSIVYCGSSDGLVNFWEREKQLSHGGVLKGHKLAVLCLAA----AGKLVFSGSADKTI 308 (368)
Q Consensus 234 ~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~----~~~~l~~~~~dg~i 308 (368)
.+.+.+.+|...|.+++|.| |.+.+++++-|++|++|.+.+.... ..+.+|...|.|+.+ |..+|++|++|.+|
T Consensus 131 a~~qtfeGH~HyVMqv~fnPkD~ntFaS~sLDrTVKVWslgs~~~n-fTl~gHekGVN~Vdyy~~gdkpylIsgaDD~ti 209 (794)
T KOG0276|consen 131 ACEQTFEGHEHYVMQVAFNPKDPNTFASASLDRTVKVWSLGSPHPN-FTLEGHEKGVNCVDYYTGGDKPYLISGADDLTI 209 (794)
T ss_pred eeeeEEcCcceEEEEEEecCCCccceeeeeccccEEEEEcCCCCCc-eeeeccccCcceEEeccCCCcceEEecCCCceE
Confidence 57889999999999999999 6789999999999999999986554 678899999988886 45699999999999
Q ss_pred EEEecCCCceeeeEeeeccccCeeEEEEecCCeeeecCCcceEEEEEeeCCcccccccCC
Q 047325 309 CVWRRDGAIHTCLSVLTGHTGPVKCLAVEEDRDSSSSTSSCAQRWIVYSGSLDKSDDDVH 368 (368)
Q Consensus 309 ~iw~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~w~l~sg~~D~~v~i~h 368 (368)
+|||+.+. .+++++.+|...|..+.|+|.-. .++|||+||+|||||
T Consensus 210 KvWDyQtk--~CV~TLeGHt~Nvs~v~fhp~lp------------iiisgsEDGTvriWh 255 (794)
T KOG0276|consen 210 KVWDYQTK--SCVQTLEGHTNNVSFVFFHPELP------------IIISGSEDGTVRIWN 255 (794)
T ss_pred EEeecchH--HHHHHhhcccccceEEEecCCCc------------EEEEecCCccEEEec
Confidence 99999887 89999999999999999999998 799999999999998
No 40
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=100.00 E-value=1.3e-36 Score=238.00 Aligned_cols=238 Identities=23% Similarity=0.393 Sum_probs=208.6
Q ss_pred eccCcCCcEEEEEec--CCEEEEccCCCcEEEEcCC-cceecccC-CCCCeeEEEEe--CCEEEEEeCCCeEEEEeecCC
Q 047325 39 SLVREEGHIYSLAAS--KDLLYTGSDSKNIRVWKNL-KEFCGFKA-SSGLVKAIVIS--GEKIFTGHQDGKIRVWKISPK 112 (368)
Q Consensus 39 ~~~~h~~~i~~~~~~--~~~l~s~~~dg~i~iw~~~-~~~~~~~~-~~~~v~~~~~~--~~~l~s~~~dg~i~vw~~~~~ 112 (368)
.++.|..+|.++.++ +.++++|+.+|.|++|+.. ..+..+.. |...|.+++|+ +..+++++.||+|+|||....
T Consensus 133 ilQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnmnnVk~~~ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~ 212 (464)
T KOG0284|consen 133 ILQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPNMNNVKIIQAHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMP 212 (464)
T ss_pred HhhhhcccceeEEEccCCCEEEEcCCCceEEecccchhhhHHhhHhhhhhhheeccCCCCceeEEecCCCeEEEEeccCC
Confidence 367899999999997 4599999999999999976 34455554 45999999999 679999999999999999866
Q ss_pred CccccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcCCCCEEEEEeCCCcEEEEEccCCeEEEEe
Q 047325 113 NQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCGLLYTASWDRTFKVWRISDSKCLESV 192 (368)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~ 192 (368)
.+. .++.||.-.|++++|+|...+|++++.|..|++||.++++++.++
T Consensus 213 kee--------------------------------~vL~GHgwdVksvdWHP~kgLiasgskDnlVKlWDprSg~cl~tl 260 (464)
T KOG0284|consen 213 KEE--------------------------------RVLRGHGWDVKSVDWHPTKGLIASGSKDNLVKLWDPRSGSCLATL 260 (464)
T ss_pred chh--------------------------------heeccCCCCcceeccCCccceeEEccCCceeEeecCCCcchhhhh
Confidence 532 234569999999999999999999999999999999999999999
Q ss_pred ecCCCceEEEEeCCCC-eEEEEcCCCeEEEEEcCCCCCCcccccceeeccccccEEEEEEcC-CCCEEEEecCCCcEEEE
Q 047325 193 SAHDDAVNSVVSSSEG-LIFTGSADGTVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSS-SRSIVYCGSSDGLVNFW 270 (368)
Q Consensus 193 ~~~~~~v~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~i~ 270 (368)
.+|+..|..+.|.+++ +|++++.|..++++|++.. +.+..+.+|+..++++.|+| ...+|.+|+.||.|..|
T Consensus 261 h~HKntVl~~~f~~n~N~Llt~skD~~~kv~DiR~m------kEl~~~r~Hkkdv~~~~WhP~~~~lftsgg~Dgsvvh~ 334 (464)
T KOG0284|consen 261 HGHKNTVLAVKFNPNGNWLLTGSKDQSCKVFDIRTM------KELFTYRGHKKDVTSLTWHPLNESLFTSGGSDGSVVHW 334 (464)
T ss_pred hhccceEEEEEEcCCCCeeEEccCCceEEEEehhHh------HHHHHhhcchhhheeeccccccccceeeccCCCceEEE
Confidence 9999999999999999 9999999999999999954 35777889999999999999 66789999999999999
Q ss_pred eCCCccccceeeeccceEEEEEE--eCCCEEEEeeCCCeEEEEecC
Q 047325 271 EREKQLSHGGVLKGHKLAVLCLA--AAGKLVFSGSADKTICVWRRD 314 (368)
Q Consensus 271 d~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~~~~~dg~i~iw~~~ 314 (368)
.+...+.+.....+|...|.+++ |-|.+|++|+.|.++++|.-.
T Consensus 335 ~v~~~~p~~~i~~AHd~~iwsl~~hPlGhil~tgsnd~t~rfw~r~ 380 (464)
T KOG0284|consen 335 VVGLEEPLGEIPPAHDGEIWSLAYHPLGHILATGSNDRTVRFWTRN 380 (464)
T ss_pred eccccccccCCCcccccceeeeeccccceeEeecCCCcceeeeccC
Confidence 99866666667778988886665 569999999999999999653
No 41
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=7.6e-36 Score=230.36 Aligned_cols=245 Identities=21% Similarity=0.364 Sum_probs=218.6
Q ss_pred cccCCCceeeeccCcCCcEEEEEec--CCEEEEccCCCcEEEEcCCc---ceecccCCCCCeeEEEEe--CCEEEEEeCC
Q 047325 29 ENLPQNGLIGSLVREEGHIYSLAAS--KDLLYTGSDSKNIRVWKNLK---EFCGFKASSGLVKAIVIS--GEKIFTGHQD 101 (368)
Q Consensus 29 ~~~~~~~~~~~~~~h~~~i~~~~~~--~~~l~s~~~dg~i~iw~~~~---~~~~~~~~~~~v~~~~~~--~~~l~s~~~d 101 (368)
-+...+++...++||++.|.+++|+ |.+|++++.|-.+++||..+ .+....+|...|.+++|- |+++++++.|
T Consensus 135 ~D~~tg~~e~~LrGHt~sv~di~~~a~Gk~l~tcSsDl~~~LWd~~~~~~c~ks~~gh~h~vS~V~f~P~gd~ilS~srD 214 (406)
T KOG0295|consen 135 FDTETGELERSLRGHTDSVFDISFDASGKYLATCSSDLSAKLWDFDTFFRCIKSLIGHEHGVSSVFFLPLGDHILSCSRD 214 (406)
T ss_pred EEccchhhhhhhhccccceeEEEEecCccEEEecCCccchhheeHHHHHHHHHHhcCcccceeeEEEEecCCeeeecccc
Confidence 3466778888999999999999997 56999999999999999875 455678999999999987 9999999999
Q ss_pred CeEEEEeecCCCccccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcCCCCEEEEEeCCCcEEEE
Q 047325 102 GKIRVWKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCGLLYTASWDRTFKVW 181 (368)
Q Consensus 102 g~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iw 181 (368)
.+|+.|++.++-+.. .+.+|...|..++.+.||.++++++.|.+|++|
T Consensus 215 ~tik~We~~tg~cv~--------------------------------t~~~h~ewvr~v~v~~DGti~As~s~dqtl~vW 262 (406)
T KOG0295|consen 215 NTIKAWECDTGYCVK--------------------------------TFPGHSEWVRMVRVNQDGTIIASCSNDQTLRVW 262 (406)
T ss_pred cceeEEecccceeEE--------------------------------eccCchHhEEEEEecCCeeEEEecCCCceEEEE
Confidence 999999999987544 344599999999999999999999999999999
Q ss_pred EccCCeEEEEeecCCCceEEEEeCCC--------------C--eEEEEcCCCeEEEEEcCCCCCCcccccceeecccccc
Q 047325 182 RISDSKCLESVSAHDDAVNSVVSSSE--------------G--LIFTGSADGTVKVWKREQHGKGTKHSLAQTLLKQECA 245 (368)
Q Consensus 182 d~~~~~~~~~~~~~~~~v~~~~~~~~--------------~--~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~ 245 (368)
-+.++++...++.|+.+|.|++|.|. + .+.+++.|++|++||+.++ .++.++.+|...
T Consensus 263 ~~~t~~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg------~cL~tL~ghdnw 336 (406)
T KOG0295|consen 263 VVATKQCKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTG------MCLFTLVGHDNW 336 (406)
T ss_pred EeccchhhhhhhccccceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCC------eEEEEEecccce
Confidence 99999999999999999999999653 2 7899999999999999887 578899999999
Q ss_pred EEEEEEcCCCCEEEEecCCCcEEEEeCCCccccceeeeccceEEEEEEe--CCCEEEEeeCCCeEEEEe
Q 047325 246 VTALVVSSSRSIVYCGSSDGLVNFWEREKQLSHGGVLKGHKLAVLCLAA--AGKLVFSGSADKTICVWR 312 (368)
Q Consensus 246 i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~~~~~dg~i~iw~ 312 (368)
|..++|+|.|++|+++.+|+++++||+++.++. ..+..|+..+.++.+ +..++++|+-|..+++|.
T Consensus 337 Vr~~af~p~Gkyi~ScaDDktlrvwdl~~~~cm-k~~~ah~hfvt~lDfh~~~p~VvTGsVdqt~KvwE 404 (406)
T KOG0295|consen 337 VRGVAFSPGGKYILSCADDKTLRVWDLKNLQCM-KTLEAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWE 404 (406)
T ss_pred eeeeEEcCCCeEEEEEecCCcEEEEEeccceee-eccCCCcceeEEEecCCCCceEEeccccceeeeee
Confidence 999999999999999999999999999987776 455588888877776 467999999999999995
No 42
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.7e-35 Score=243.67 Aligned_cols=271 Identities=20% Similarity=0.297 Sum_probs=229.9
Q ss_pred eeeeccCcCCcEEEEEecCC--EEEEccCCCcEEEEcCCcc--eecccCCCCCeeEEEEe--CCEEEEEeCCCeEEEEee
Q 047325 36 LIGSLVREEGHIYSLAASKD--LLYTGSDSKNIRVWKNLKE--FCGFKASSGLVKAIVIS--GEKIFTGHQDGKIRVWKI 109 (368)
Q Consensus 36 ~~~~~~~h~~~i~~~~~~~~--~l~s~~~dg~i~iw~~~~~--~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~vw~~ 109 (368)
+.+.+..|+.+|.++.++|. .++++-.+|.|.|||.+++ ...+.-..-+|.+..|- .+.+++|+.|..|+||+.
T Consensus 5 ~krk~~~rSdRVKsVd~HPtePw~la~LynG~V~IWnyetqtmVksfeV~~~PvRa~kfiaRknWiv~GsDD~~IrVfny 84 (794)
T KOG0276|consen 5 FKRKFQSRSDRVKSVDFHPTEPWILAALYNGDVQIWNYETQTMVKSFEVSEVPVRAAKFIARKNWIVTGSDDMQIRVFNY 84 (794)
T ss_pred hhhHhhccCCceeeeecCCCCceEEEeeecCeeEEEecccceeeeeeeecccchhhheeeeccceEEEecCCceEEEEec
Confidence 34556778999999999977 8888999999999998765 55677778889888887 678999999999999999
Q ss_pred cCCCccccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcCCCCEEEEEeCCCcEEEEEccCC-eE
Q 047325 110 SPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCGLLYTASWDRTFKVWRISDS-KC 188 (368)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~-~~ 188 (368)
++.+... .+..|.+-|++++.+|...++++++.|-.|++||-+.+ .+
T Consensus 85 nt~ekV~--------------------------------~FeAH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~~wa~ 132 (794)
T KOG0276|consen 85 NTGEKVK--------------------------------TFEAHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWENEWAC 132 (794)
T ss_pred ccceeeE--------------------------------EeeccccceeeeeecCCCCeEEecCCccEEEEeeccCceee
Confidence 9987543 44459999999999999999999999999999998754 67
Q ss_pred EEEeecCCCceEEEEeCCCC--eEEEEcCCCeEEEEEcCCCCCCcccccceeeccccccEEEEEEcCCC--CEEEEecCC
Q 047325 189 LESVSAHDDAVNSVVSSSEG--LIFTGSADGTVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSSSR--SIVYCGSSD 264 (368)
Q Consensus 189 ~~~~~~~~~~v~~~~~~~~~--~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~--~~l~~~~~d 264 (368)
.+++.+|...|.+++|+|.. .+++++-|++|++|.+.++ .+..++.+|+..|+++++-+.| .+|++|+.|
T Consensus 133 ~qtfeGH~HyVMqv~fnPkD~ntFaS~sLDrTVKVWslgs~------~~nfTl~gHekGVN~Vdyy~~gdkpylIsgaDD 206 (794)
T KOG0276|consen 133 EQTFEGHEHYVMQVAFNPKDPNTFASASLDRTVKVWSLGSP------HPNFTLEGHEKGVNCVDYYTGGDKPYLISGADD 206 (794)
T ss_pred eeEEcCcceEEEEEEecCCCccceeeeeccccEEEEEcCCC------CCceeeeccccCcceEEeccCCCcceEEecCCC
Confidence 89999999999999999987 9999999999999999766 4577888999999999998844 699999999
Q ss_pred CcEEEEeCCCccccceeeeccceEE--EEEEeCCCEEEEeeCCCeEEEEecCCCceeeeEeeeccccCeeEEEEecCCee
Q 047325 265 GLVNFWEREKQLSHGGVLKGHKLAV--LCLAAAGKLVFSGSADKTICVWRRDGAIHTCLSVLTGHTGPVKCLAVEEDRDS 342 (368)
Q Consensus 265 g~i~i~d~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~ 342 (368)
..+++||.++..+. ..+.+|...+ .+++|.-.++++|++||+++||+-.+. +...++.-.-+.|++++-.+.+..
T Consensus 207 ~tiKvWDyQtk~CV-~TLeGHt~Nvs~v~fhp~lpiiisgsEDGTvriWhs~Ty--~lE~tLn~gleRvW~I~~~k~~~~ 283 (794)
T KOG0276|consen 207 LTIKVWDYQTKSCV-QTLEGHTNNVSFVFFHPELPIIISGSEDGTVRIWNSKTY--KLEKTLNYGLERVWCIAAHKGDGK 283 (794)
T ss_pred ceEEEeecchHHHH-HHhhcccccceEEEecCCCcEEEEecCCccEEEecCcce--ehhhhhhcCCceEEEEeecCCCCe
Confidence 99999999987665 6788888777 455567789999999999999965554 555566666778999998887775
Q ss_pred eecCC
Q 047325 343 SSSTS 347 (368)
Q Consensus 343 ~~~~~ 347 (368)
++.+.
T Consensus 284 i~vG~ 288 (794)
T KOG0276|consen 284 IAVGF 288 (794)
T ss_pred EEEec
Confidence 54443
No 43
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.2e-33 Score=213.32 Aligned_cols=280 Identities=20% Similarity=0.306 Sum_probs=223.9
Q ss_pred eeccCcCCcEEEEEec--CCEEEEccCCCcEEEEcCCcc--eecccCCCCCeeEEEEe--CCEEEEEeC--CCeEEEEee
Q 047325 38 GSLVREEGHIYSLAAS--KDLLYTGSDSKNIRVWKNLKE--FCGFKASSGLVKAIVIS--GEKIFTGHQ--DGKIRVWKI 109 (368)
Q Consensus 38 ~~~~~h~~~i~~~~~~--~~~l~s~~~dg~i~iw~~~~~--~~~~~~~~~~v~~~~~~--~~~l~s~~~--dg~i~vw~~ 109 (368)
+.+..-.+.|+++.|+ |+.|++++.|.++++||...+ ......+.-.|..++|. .+.++.++. |.+|+..++
T Consensus 8 k~f~~~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~ti~skkyG~~~~~Fth~~~~~i~sStk~d~tIryLsl 87 (311)
T KOG1446|consen 8 KVFRETNGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVKTINSKKYGVDLACFTHHSNTVIHSSTKEDDTIRYLSL 87 (311)
T ss_pred cccccCCCceeEEEecCCCCEEEEecCCCeEEEEEcCCCceeeEeecccccccEEEEecCCceEEEccCCCCCceEEEEe
Confidence 3444567889999997 559999999999999998754 45566666678888887 666766666 889999999
Q ss_pred cCCCccccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcCCCCEEEEEeCCCcEEEEEccCCeEE
Q 047325 110 SPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCGLLYTASWDRTFKVWRISDSKCL 189 (368)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~ 189 (368)
.+++. .+.+.||...|++++.+|-+..+++++.|++|++||++..++.
T Consensus 88 ~dNky--------------------------------lRYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cq 135 (311)
T KOG1446|consen 88 HDNKY--------------------------------LRYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQ 135 (311)
T ss_pred ecCce--------------------------------EEEcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCc
Confidence 98874 3455679999999999999999999999999999999988888
Q ss_pred EEeecCCCceEEEEeCCCC-eEEEEcCCCeEEEEEcCCCCCCcccccceeeccccccEEEEEEcCCCCEEEEecCCCcEE
Q 047325 190 ESVSAHDDAVNSVVSSSEG-LIFTGSADGTVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSSSRSIVYCGSSDGLVN 268 (368)
Q Consensus 190 ~~~~~~~~~v~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~ 268 (368)
..+.....+ .+++.|+| .+|++.....|++||+|..+++.-.... ...+.....+.+.|+|+|++++.+...+.++
T Consensus 136 g~l~~~~~p--i~AfDp~GLifA~~~~~~~IkLyD~Rs~dkgPF~tf~-i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~ 212 (311)
T KOG1446|consen 136 GLLNLSGRP--IAAFDPEGLIFALANGSELIKLYDLRSFDKGPFTTFS-ITDNDEAEWTDLEFSPDGKSILLSTNASFIY 212 (311)
T ss_pred eEEecCCCc--ceeECCCCcEEEEecCCCeEEEEEecccCCCCceeEc-cCCCCccceeeeEEcCCCCEEEEEeCCCcEE
Confidence 777644443 47899999 6777776669999999987553221111 1124467789999999999999999999999
Q ss_pred EEeCCCccccceeeeccce-----EEEEEEeCCCEEEEeeCCCeEEEEecCCCceeeeEeeec-cccCeeEEEEecCCee
Q 047325 269 FWEREKQLSHGGVLKGHKL-----AVLCLAAAGKLVFSGSADKTICVWRRDGAIHTCLSVLTG-HTGPVKCLAVEEDRDS 342 (368)
Q Consensus 269 i~d~~~~~~~~~~~~~~~~-----~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~-h~~~v~~l~~~~~~~~ 342 (368)
+.|.-.+... ..+..+.. --.++.||++++++|+.||+|++|+++++ ..+..+.+ +.+++.++.|+|...+
T Consensus 213 ~lDAf~G~~~-~tfs~~~~~~~~~~~a~ftPds~Fvl~gs~dg~i~vw~~~tg--~~v~~~~~~~~~~~~~~~fnP~~~m 289 (311)
T KOG1446|consen 213 LLDAFDGTVK-STFSGYPNAGNLPLSATFTPDSKFVLSGSDDGTIHVWNLETG--KKVAVLRGPNGGPVSCVRFNPRYAM 289 (311)
T ss_pred EEEccCCcEe-eeEeeccCCCCcceeEEECCCCcEEEEecCCCcEEEEEcCCC--cEeeEecCCCCCCccccccCCceee
Confidence 9998777644 33333322 23778899999999999999999999877 66777777 7899999999999999
Q ss_pred eecCCcceEEEEE
Q 047325 343 SSSTSSCAQRWIV 355 (368)
Q Consensus 343 ~~~~~~~~~~w~l 355 (368)
+++++...-.|..
T Consensus 290 f~sa~s~l~fw~p 302 (311)
T KOG1446|consen 290 FVSASSNLVFWLP 302 (311)
T ss_pred eeecCceEEEEec
Confidence 9999999988854
No 44
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=1e-35 Score=227.01 Aligned_cols=277 Identities=23% Similarity=0.332 Sum_probs=232.2
Q ss_pred ccCcCCcEEEEEecCC--EEEEccCCCcEEEEcCCcc----------eecccCCCCCeeEEEEe--CCEEEEEeCCCeEE
Q 047325 40 LVREEGHIYSLAASKD--LLYTGSDSKNIRVWKNLKE----------FCGFKASSGLVKAIVIS--GEKIFTGHQDGKIR 105 (368)
Q Consensus 40 ~~~h~~~i~~~~~~~~--~l~s~~~dg~i~iw~~~~~----------~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~ 105 (368)
-.+.+..+.|..|+|+ +|++|+.||.|.+||..++ ...+.-+..+|.|+.|+ .+.|++|+.||.|+
T Consensus 209 KFg~KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsqDGkIK 288 (508)
T KOG0275|consen 209 KFGQKSHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQDGKIK 288 (508)
T ss_pred ecccccchhheeeCCCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHHhhccCcCCcEE
Confidence 3456677888888866 9999999999999997532 12355688999999999 67899999999999
Q ss_pred EEeecCCCccccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcCCCCEEEEEeCCCcEEEEEccC
Q 047325 106 VWKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCGLLYTASWDRTFKVWRISD 185 (368)
Q Consensus 106 vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~ 185 (368)
+|.++++.+...+... |+..|+|+.|+.|+..+++++.|.++++.-+.+
T Consensus 289 vWri~tG~ClRrFdrA-------------------------------HtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKS 337 (508)
T KOG0275|consen 289 VWRIETGQCLRRFDRA-------------------------------HTKGVTCLSFSRDNSQILSASFDQTVRIHGLKS 337 (508)
T ss_pred EEEEecchHHHHhhhh-------------------------------hccCeeEEEEccCcchhhcccccceEEEecccc
Confidence 9999999987776643 999999999999999999999999999999999
Q ss_pred CeEEEEeecCCCceEEEEeCCCC-eEEEEcCCCeEEEEEcCCCCCCcccccceeec--cccccEEEEEEcC-CCCEEEEe
Q 047325 186 SKCLESVSAHDDAVNSVVSSSEG-LIFTGSADGTVKVWKREQHGKGTKHSLAQTLL--KQECAVTALVVSS-SRSIVYCG 261 (368)
Q Consensus 186 ~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~--~~~~~i~~~~~~~-~~~~l~~~ 261 (368)
|+++..+++|...|+...|.++| .+++++.||+|++|+..+.. +...+. +...+|.++..-| +...++.+
T Consensus 338 GK~LKEfrGHsSyvn~a~ft~dG~~iisaSsDgtvkvW~~Ktte------C~~Tfk~~~~d~~vnsv~~~PKnpeh~iVC 411 (508)
T KOG0275|consen 338 GKCLKEFRGHSSYVNEATFTDDGHHIISASSDGTVKVWHGKTTE------CLSTFKPLGTDYPVNSVILLPKNPEHFIVC 411 (508)
T ss_pred chhHHHhcCccccccceEEcCCCCeEEEecCCccEEEecCcchh------hhhhccCCCCcccceeEEEcCCCCceEEEE
Confidence 99999999999999999999999 99999999999999998764 333332 3556788888777 55688888
Q ss_pred cCCCcEEEEeCCCccccceeee----ccceEEEEEEeCCCEEEEeeCCCeEEEEecCCCceeeeEeeeccccCeeEEEEe
Q 047325 262 SSDGLVNFWEREKQLSHGGVLK----GHKLAVLCLAAAGKLVFSGSADKTICVWRRDGAIHTCLSVLTGHTGPVKCLAVE 337 (368)
Q Consensus 262 ~~dg~i~i~d~~~~~~~~~~~~----~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~l~~~ 337 (368)
...+++++.++...... .... +..--..+++|.|.++++.++|+.++.|.+.++ ....++..|...|..++-+
T Consensus 412 Nrsntv~imn~qGQvVr-sfsSGkREgGdFi~~~lSpkGewiYcigED~vlYCF~~~sG--~LE~tl~VhEkdvIGl~HH 488 (508)
T KOG0275|consen 412 NRSNTVYIMNMQGQVVR-SFSSGKREGGDFINAILSPKGEWIYCIGEDGVLYCFSVLSG--KLERTLPVHEKDVIGLTHH 488 (508)
T ss_pred cCCCeEEEEeccceEEe-eeccCCccCCceEEEEecCCCcEEEEEccCcEEEEEEeecC--ceeeeeecccccccccccC
Confidence 89999999998754222 2211 112223678899999999999999999988776 6667788899999999999
Q ss_pred cCCeeeecCCcceEEEEEeeCCcccccccCC
Q 047325 338 EDRDSSSSTSSCAQRWIVYSGSLDKSDDDVH 368 (368)
Q Consensus 338 ~~~~~~~~~~~~~~~w~l~sg~~D~~v~i~h 368 (368)
|..+ .+++-++||.+++|.
T Consensus 489 PHqN------------llAsYsEDgllKLWk 507 (508)
T KOG0275|consen 489 PHQN------------LLASYSEDGLLKLWK 507 (508)
T ss_pred cccc------------hhhhhcccchhhhcC
Confidence 9988 789999999999994
No 45
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=100.00 E-value=2.4e-35 Score=227.37 Aligned_cols=230 Identities=23% Similarity=0.382 Sum_probs=202.2
Q ss_pred ecccCCCCCeeEEEEe--CCEEEEEeCCCeEEEEeecCCCccccccCCccccceeeeeccCCCCceeEecccceeeeeec
Q 047325 76 CGFKASSGLVKAIVIS--GEKIFTGHQDGKIRVWKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRH 153 (368)
Q Consensus 76 ~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (368)
..+.+|.+.|.|++++ ++.+++|+.|++|+|||+.+++... .+.||
T Consensus 145 rVi~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~Lkl--------------------------------tltGh 192 (460)
T KOG0285|consen 145 RVISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQLKL--------------------------------TLTGH 192 (460)
T ss_pred hhhhhccceEEEEeeCCCceeEEecCCCceeEEEEcccCeEEE--------------------------------eecch
Confidence 3467899999999998 7799999999999999999987433 34569
Q ss_pred CCCEeEEEEcCCCCEEEEEeCCCcEEEEEccCCeEEEEeecCCCceEEEEeCCCC-eEEEEcCCCeEEEEEcCCCCCCcc
Q 047325 154 SDAVSCMSLDQDCGLLYTASWDRTFKVWRISDSKCLESVSAHDDAVNSVVSSSEG-LIFTGSADGTVKVWKREQHGKGTK 232 (368)
Q Consensus 154 ~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~ 232 (368)
...|..+++++-..++++++.|+.|+.||++..+.++.+.+|-..|.|++.+|.- .|++|+.|..+++||+|+..
T Consensus 193 i~~vr~vavS~rHpYlFs~gedk~VKCwDLe~nkvIR~YhGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~---- 268 (460)
T KOG0285|consen 193 IETVRGVAVSKRHPYLFSAGEDKQVKCWDLEYNKVIRHYHGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRA---- 268 (460)
T ss_pred hheeeeeeecccCceEEEecCCCeeEEEechhhhhHHHhccccceeEEEeccccceeEEecCCcceEEEeeecccc----
Confidence 9999999999999999999999999999999999999999999999999999987 99999999999999999763
Q ss_pred cccceeeccccccEEEEEEcCCCCEEEEecCCCcEEEEeCCCccccceeeeccceEEE--EEEeCCCEEEEeeCCCeEEE
Q 047325 233 HSLAQTLLKQECAVTALVVSSSRSIVYCGSSDGLVNFWEREKQLSHGGVLKGHKLAVL--CLAAAGKLVFSGSADKTICV 310 (368)
Q Consensus 233 ~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~~~~~dg~i~i 310 (368)
.+..+.+|..+|.++.+.|-...+++|+.|++|++||++.++.. ..+..|...+. ++.|....+++++.| .|+-
T Consensus 269 --~V~~l~GH~~~V~~V~~~~~dpqvit~S~D~tvrlWDl~agkt~-~tlt~hkksvral~lhP~e~~fASas~d-nik~ 344 (460)
T KOG0285|consen 269 --SVHVLSGHTNPVASVMCQPTDPQVITGSHDSTVRLWDLRAGKTM-ITLTHHKKSVRALCLHPKENLFASASPD-NIKQ 344 (460)
T ss_pred --eEEEecCCCCcceeEEeecCCCceEEecCCceEEEeeeccCcee-EeeecccceeeEEecCCchhhhhccCCc-ccee
Confidence 47888999999999999998889999999999999999988766 46667777775 455777888888887 5999
Q ss_pred EecCCCceeeeEeeeccccCeeEEEEecCCeeeecCC
Q 047325 311 WRRDGAIHTCLSVLTGHTGPVKCLAVEEDRDSSSSTS 347 (368)
Q Consensus 311 w~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~ 347 (368)
|++..+ ..+..+.+|...|++++...|+-++..++
T Consensus 345 w~~p~g--~f~~nlsgh~~iintl~~nsD~v~~~G~d 379 (460)
T KOG0285|consen 345 WKLPEG--EFLQNLSGHNAIINTLSVNSDGVLVSGGD 379 (460)
T ss_pred ccCCcc--chhhccccccceeeeeeeccCceEEEcCC
Confidence 988776 67777999999999999999997555444
No 46
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=6e-35 Score=214.99 Aligned_cols=233 Identities=22% Similarity=0.283 Sum_probs=201.5
Q ss_pred cCCcEEEEEecCC---EEEEccCCCcEEEEcCC---cceecccCCCCCeeEEEEe---CCEEEEEeCCCeEEEEeecCCC
Q 047325 43 EEGHIYSLAASKD---LLYTGSDSKNIRVWKNL---KEFCGFKASSGLVKAIVIS---GEKIFTGHQDGKIRVWKISPKN 113 (368)
Q Consensus 43 h~~~i~~~~~~~~---~l~s~~~dg~i~iw~~~---~~~~~~~~~~~~v~~~~~~---~~~l~s~~~dg~i~vw~~~~~~ 113 (368)
-.+.++.++++++ .+++++.||++++||+. .++..++.|...|.++.|+ ++.+++++.||+|++|+...++
T Consensus 59 ~~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~~~s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~ 138 (311)
T KOG0277|consen 59 TEDGLFDVAWSENHENQVIAASGDGSLRLFDLTMPSKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPN 138 (311)
T ss_pred cccceeEeeecCCCcceEEEEecCceEEEeccCCCCcchhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCCCc
Confidence 3567889999754 89999999999999965 5678899999999999998 6778889999999999987655
Q ss_pred ccccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcC-CCCEEEEEeCCCcEEEEEccCCeEEEEe
Q 047325 114 QSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQ-DCGLLYTASWDRTFKVWRISDSKCLESV 192 (368)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~ 192 (368)
. ...+.||...|...+|+| ..+.+++++.|+++++||++..-....+
T Consensus 139 S--------------------------------v~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk~~~i 186 (311)
T KOG0277|consen 139 S--------------------------------VQTFNGHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSPGKFMSI 186 (311)
T ss_pred c--------------------------------eEeecCCccEEEEEecCCCCCCeEEEccCCceEEEEEecCCCceeEE
Confidence 2 344667999999999999 5789999999999999999865444448
Q ss_pred ecCCCceEEEEeCCCC--eEEEEcCCCeEEEEEcCCCCCCcccccceeeccccccEEEEEEcCC-CCEEEEecCCCcEEE
Q 047325 193 SAHDDAVNSVVSSSEG--LIFTGSADGTVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSSS-RSIVYCGSSDGLVNF 269 (368)
Q Consensus 193 ~~~~~~v~~~~~~~~~--~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~l~~~~~dg~i~i 269 (368)
..|...|.|+.|+.-+ .+++|+.|+.|+.||++... .++..+.+|.-.|+.+.|+|. ...|++++.|-+++|
T Consensus 187 ~ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r-----~pl~eL~gh~~AVRkvk~Sph~~~lLaSasYDmT~ri 261 (311)
T KOG0277|consen 187 EAHNSEILCCDWSKYNHNVLATGGVDNLVRGWDIRNLR-----TPLFELNGHGLAVRKVKFSPHHASLLASASYDMTVRI 261 (311)
T ss_pred EeccceeEeecccccCCcEEEecCCCceEEEEehhhcc-----ccceeecCCceEEEEEecCcchhhHhhhccccceEEe
Confidence 9999999999999866 99999999999999999754 367788999999999999995 468999999999999
Q ss_pred EeCCCccccceeeeccceEEEEEEe---CCCEEEEeeCCCeEEEEe
Q 047325 270 WEREKQLSHGGVLKGHKLAVLCLAA---AGKLVFSGSADKTICVWR 312 (368)
Q Consensus 270 ~d~~~~~~~~~~~~~~~~~~~~~~~---~~~~l~~~~~dg~i~iw~ 312 (368)
||...+.........|...+..+.+ ++.++++.+.|+.++||+
T Consensus 262 w~~~~~ds~~e~~~~HtEFv~g~Dws~~~~~~vAs~gWDe~l~Vw~ 307 (311)
T KOG0277|consen 262 WDPERQDSAIETVDHHTEFVCGLDWSLFDPGQVASTGWDELLYVWN 307 (311)
T ss_pred cccccchhhhhhhhccceEEeccccccccCceeeecccccceeeec
Confidence 9999877777778889888876665 588999999999999996
No 47
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=100.00 E-value=9.4e-34 Score=223.68 Aligned_cols=273 Identities=21% Similarity=0.297 Sum_probs=232.4
Q ss_pred CcEEEEEecC--CEEEEccCCCcEEEEcCC--cceecccCCCCCeeEEEEe--CCEEEEEeCCCeEEEEeecCCCccccc
Q 047325 45 GHIYSLAASK--DLLYTGSDSKNIRVWKNL--KEFCGFKASSGLVKAIVIS--GEKIFTGHQDGKIRVWKISPKNQSVHK 118 (368)
Q Consensus 45 ~~i~~~~~~~--~~l~s~~~dg~i~iw~~~--~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~vw~~~~~~~~~~~ 118 (368)
-.|.++...+ +.++||+.|.++.++|.. +.+..+++|...|+.+.++ ...+++++.|-.|+||...........
T Consensus 220 pgi~ald~~~s~~~ilTGG~d~~av~~d~~s~q~l~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~s~~~~~ 299 (506)
T KOG0289|consen 220 PGITALDIIPSSSKILTGGEDKTAVLFDKPSNQILATLKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPLSSEPTSS 299 (506)
T ss_pred CCeeEEeecCCCCcceecCCCCceEEEecchhhhhhhccCcceEEEEEEeccchhheeecCCcceEEeeccccccCcccc
Confidence 3477887776 599999999999999976 4577899999999999998 567899999999999998776533322
Q ss_pred cCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcCCCCEEEEEeCCCcEEEEEccCCeEEEEeec--CC
Q 047325 119 RAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCGLLYTASWDRTFKVWRISDSKCLESVSA--HD 196 (368)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~--~~ 196 (368)
. .|..+|+.+..+|.|.||++++.|++..+.|++++..+..... ..
T Consensus 300 ~--------------------------------~h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~ 347 (506)
T KOG0289|consen 300 R--------------------------------PHEEPVTGLSLHPTGEYLLSASNDGTWAFSDISSGSQLTVVSDETSD 347 (506)
T ss_pred c--------------------------------cccccceeeeeccCCcEEEEecCCceEEEEEccCCcEEEEEeecccc
Confidence 2 2999999999999999999999999999999999998877764 33
Q ss_pred CceEEEEeCCCC-eEEEEcCCCeEEEEEcCCCCCCcccccceeeccccccEEEEEEcCCCCEEEEecCCCcEEEEeCCCc
Q 047325 197 DAVNSVVSSSEG-LIFTGSADGTVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSSSRSIVYCGSSDGLVNFWEREKQ 275 (368)
Q Consensus 197 ~~v~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~ 275 (368)
-.+++.+|+||| .+.+|..|+.|++||+..+. ....+.+|.++|..++|+.+|-+|++++.|+.|++||+|+.
T Consensus 348 v~~ts~~fHpDgLifgtgt~d~~vkiwdlks~~------~~a~Fpght~~vk~i~FsENGY~Lat~add~~V~lwDLRKl 421 (506)
T KOG0289|consen 348 VEYTSAAFHPDGLIFGTGTPDGVVKIWDLKSQT------NVAKFPGHTGPVKAISFSENGYWLATAADDGSVKLWDLRKL 421 (506)
T ss_pred ceeEEeeEcCCceEEeccCCCceEEEEEcCCcc------ccccCCCCCCceeEEEeccCceEEEEEecCCeEEEEEehhh
Confidence 468999999999 88999999999999998764 46778899999999999999999999999999999999987
Q ss_pred cccceeeeccceEE--EEEEeCCCEEEEeeCCCeEEEEecCCCceeeeEeeeccccCeeEEEEecCCeeeecCCcceEEE
Q 047325 276 LSHGGVLKGHKLAV--LCLAAAGKLVFSGSADKTICVWRRDGAIHTCLSVLTGHTGPVKCLAVEEDRDSSSSTSSCAQRW 353 (368)
Q Consensus 276 ~~~~~~~~~~~~~~--~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~w 353 (368)
+............+ ++|...|.+|+.++.|=.|++++-.+..+..+..+..|.+..+.+.|....+
T Consensus 422 ~n~kt~~l~~~~~v~s~~fD~SGt~L~~~g~~l~Vy~~~k~~k~W~~~~~~~~~sg~st~v~Fg~~aq------------ 489 (506)
T KOG0289|consen 422 KNFKTIQLDEKKEVNSLSFDQSGTYLGIAGSDLQVYICKKKTKSWTEIKELADHSGLSTGVRFGEHAQ------------ 489 (506)
T ss_pred cccceeeccccccceeEEEcCCCCeEEeecceeEEEEEecccccceeeehhhhcccccceeeecccce------------
Confidence 65544444443344 5555669999999998888888777778889999999999999999999998
Q ss_pred EEeeCCcccccccC
Q 047325 354 IVYSGSLDKSDDDV 367 (368)
Q Consensus 354 ~l~sg~~D~~v~i~ 367 (368)
+++++|.|..+|++
T Consensus 490 ~l~s~smd~~l~~~ 503 (506)
T KOG0289|consen 490 YLASTSMDAILRLY 503 (506)
T ss_pred EEeeccchhheEEe
Confidence 78899999888875
No 48
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=100.00 E-value=3.7e-34 Score=246.19 Aligned_cols=273 Identities=29% Similarity=0.494 Sum_probs=232.3
Q ss_pred cCCcEEEEEecCCEEEEccCCCcEEEEcCCcc--ee-cccCCCCCeeEEEEe--CCEEEEEeCCCeEEEEeecCCCcccc
Q 047325 43 EEGHIYSLAASKDLLYTGSDSKNIRVWKNLKE--FC-GFKASSGLVKAIVIS--GEKIFTGHQDGKIRVWKISPKNQSVH 117 (368)
Q Consensus 43 h~~~i~~~~~~~~~l~s~~~dg~i~iw~~~~~--~~-~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~vw~~~~~~~~~~ 117 (368)
|...+.+..+.++++++++.|++|++||..+. +. .+.+|.+.|.++++. +++|++|+.|.++++||..++++..
T Consensus 207 ~~~~~~~~q~~~~~~~~~s~~~tl~~~~~~~~~~i~~~l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~sg~C~~- 285 (537)
T KOG0274|consen 207 DDHVVLCLQLHDGFFKSGSDDSTLHLWDLNNGYLILTRLVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCSTGECTH- 285 (537)
T ss_pred CcchhhhheeecCeEEecCCCceeEEeecccceEEEeeccCCCCCceeEEEecCCCEEEEEecCCcEEeEecCCCcEEE-
Confidence 56678899999899999999999999998754 33 488999999999999 9999999999999999999888543
Q ss_pred ccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcCCCCEEEEEeCCCcEEEEEccCCeEEEEeecCCC
Q 047325 118 KRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCGLLYTASWDRTFKVWRISDSKCLESVSAHDD 197 (368)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~ 197 (368)
++.+|.+.|.++...+ ..+++|+.|.+|++|+++++..+..+.+|..
T Consensus 286 -------------------------------~l~gh~stv~~~~~~~--~~~~sgs~D~tVkVW~v~n~~~l~l~~~h~~ 332 (537)
T KOG0274|consen 286 -------------------------------SLQGHTSSVRCLTIDP--FLLVSGSRDNTVKVWDVTNGACLNLLRGHTG 332 (537)
T ss_pred -------------------------------EecCCCceEEEEEccC--ceEeeccCCceEEEEeccCcceEEEeccccc
Confidence 3445999999998865 4788899999999999999999999999999
Q ss_pred ceEEEEeCCCCeEEEEcCCCeEEEEEcCCCCCCcccccceeeccccccEEEEEEcCCCCEEEEecCCCcEEEEeCCCccc
Q 047325 198 AVNSVVSSSEGLIFTGSADGTVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSSSRSIVYCGSSDGLVNFWEREKQLS 277 (368)
Q Consensus 198 ~v~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~ 277 (368)
+|+++... .+.+++|+.|++|++||++.. +++..+.+|...|.++.+.+. +.+++|+.|+.|++||+++...
T Consensus 333 ~V~~v~~~-~~~lvsgs~d~~v~VW~~~~~------~cl~sl~gH~~~V~sl~~~~~-~~~~Sgs~D~~IkvWdl~~~~~ 404 (537)
T KOG0274|consen 333 PVNCVQLD-EPLLVSGSYDGTVKVWDPRTG------KCLKSLSGHTGRVYSLIVDSE-NRLLSGSLDTTIKVWDLRTKRK 404 (537)
T ss_pred cEEEEEec-CCEEEEEecCceEEEEEhhhc------eeeeeecCCcceEEEEEecCc-ceEEeeeeccceEeecCCchhh
Confidence 99999998 559999999999999999865 578999999999999988765 8999999999999999999845
Q ss_pred cceeeeccceEEEEEEeCCCEEEEeeCCCeEEEEecCCCceeeeEeeec-cccCeeEEEEecCCeeeecCCcceEEEEEe
Q 047325 278 HGGVLKGHKLAVLCLAAAGKLVFSGSADKTICVWRRDGAIHTCLSVLTG-HTGPVKCLAVEEDRDSSSSTSSCAQRWIVY 356 (368)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~-h~~~v~~l~~~~~~~~~~~~~~~~~~w~l~ 356 (368)
....+.+|...+..+...+++|++++.|+.|++||..++ .++..+.+ |...|..+++..+--+.++-++..++|.+-
T Consensus 405 c~~tl~~h~~~v~~l~~~~~~Lvs~~aD~~Ik~WD~~~~--~~~~~~~~~~~~~v~~l~~~~~~il~s~~~~~~~l~dl~ 482 (537)
T KOG0274|consen 405 CIHTLQGHTSLVSSLLLRDNFLVSSSADGTIKLWDAEEG--ECLRTLEGRHVGGVSALALGKEEILCSSDDGSVKLWDLR 482 (537)
T ss_pred hhhhhcCCcccccccccccceeEeccccccEEEeecccC--ceeeeeccCCcccEEEeecCcceEEEEecCCeeEEEecc
Confidence 557888999999999999999999999999999998877 77888887 678899999872222222333445555554
Q ss_pred eCC
Q 047325 357 SGS 359 (368)
Q Consensus 357 sg~ 359 (368)
++.
T Consensus 483 ~~~ 485 (537)
T KOG0274|consen 483 SGT 485 (537)
T ss_pred cCc
Confidence 443
No 49
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1.3e-34 Score=211.07 Aligned_cols=241 Identities=21% Similarity=0.296 Sum_probs=208.7
Q ss_pred ceecccCCCCCeeEEEEe--CCEEEEEeCCCeEEEEeecCCCccccccCCccccceeeeeccCCCCceeEecccceeeee
Q 047325 74 EFCGFKASSGLVKAIVIS--GEKIFTGHQDGKIRVWKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWI 151 (368)
Q Consensus 74 ~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (368)
....+..+.++|.++.|+ |+|.++++.|.+|++|+...+..+ ..+.
T Consensus 9 r~~~l~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg~li--------------------------------ktYs 56 (307)
T KOG0316|consen 9 RLSILDCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGALI--------------------------------KTYS 56 (307)
T ss_pred hceeecccccceEEEEEccCCCEEEEcCCCceEEeeccccccee--------------------------------eeec
Confidence 445677899999999999 999999999999999998777543 3455
Q ss_pred ecCCCEeEEEEcCCCCEEEEEeCCCcEEEEEccCCeEEEEeecCCCceEEEEeCCCC-eEEEEcCCCeEEEEEcCCCCCC
Q 047325 152 RHSDAVSCMSLDQDCGLLYTASWDRTFKVWRISDSKCLESVSAHDDAVNSVVSSSEG-LIFTGSADGTVKVWKREQHGKG 230 (368)
Q Consensus 152 ~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~ 230 (368)
+|..+|..++.+.|+..|++|+.|..+.+||+.+|+.++.+.+|.+.|+.+.|+.+. .+++|+.|.++++||.|....
T Consensus 57 ghG~EVlD~~~s~Dnskf~s~GgDk~v~vwDV~TGkv~Rr~rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~- 135 (307)
T KOG0316|consen 57 GHGHEVLDAALSSDNSKFASCGGDKAVQVWDVNTGKVDRRFRGHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSF- 135 (307)
T ss_pred CCCceeeeccccccccccccCCCCceEEEEEcccCeeeeecccccceeeEEEecCcceEEEeccccceeEEEEcccCCC-
Confidence 699999999999999999999999999999999999999999999999999999988 999999999999999997543
Q ss_pred cccccceeeccccccEEEEEEcCCCCEEEEecCCCcEEEEeCCCccccceeeeccceEEEEEEeCCCEEEEeeCCCeEEE
Q 047325 231 TKHSLAQTLLKQECAVTALVVSSSRSIVYCGSSDGLVNFWEREKQLSHGGVLKGHKLAVLCLAAAGKLVFSGSADKTICV 310 (368)
Q Consensus 231 ~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i 310 (368)
.+++.+......|.++... +..+++|+.||+++.||++.+... ....+|+....+++++++..++++.|+++++
T Consensus 136 ---ePiQildea~D~V~Si~v~--~heIvaGS~DGtvRtydiR~G~l~-sDy~g~pit~vs~s~d~nc~La~~l~stlrL 209 (307)
T KOG0316|consen 136 ---EPIQILDEAKDGVSSIDVA--EHEIVAGSVDGTVRTYDIRKGTLS-SDYFGHPITSVSFSKDGNCSLASSLDSTLRL 209 (307)
T ss_pred ---CccchhhhhcCceeEEEec--ccEEEeeccCCcEEEEEeecceee-hhhcCCcceeEEecCCCCEEEEeeccceeee
Confidence 5677778888899999885 567999999999999999988765 4566889999999999999999999999999
Q ss_pred EecCCCceeeeEeeeccccCe--eEEEEecCCeeeecCCcceEEEEEeeCCcccccccC
Q 047325 311 WRRDGAIHTCLSVLTGHTGPV--KCLAVEEDRDSSSSTSSCAQRWIVYSGSLDKSDDDV 367 (368)
Q Consensus 311 w~~~~~~~~~~~~~~~h~~~v--~~l~~~~~~~~~~~~~~~~~~w~l~sg~~D~~v~i~ 367 (368)
.|-+++ +.++.+++|.+.= ...+++.... .+++||+||.|.+|
T Consensus 210 lDk~tG--klL~sYkGhkn~eykldc~l~qsdt------------hV~sgSEDG~Vy~w 254 (307)
T KOG0316|consen 210 LDKETG--KLLKSYKGHKNMEYKLDCCLNQSDT------------HVFSGSEDGKVYFW 254 (307)
T ss_pred cccchh--HHHHHhcccccceeeeeeeecccce------------eEEeccCCceEEEE
Confidence 987776 8899999998753 3445666666 57777777777766
No 50
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=1.4e-33 Score=236.99 Aligned_cols=312 Identities=17% Similarity=0.288 Sum_probs=233.7
Q ss_pred CCceeeeccCcCCcEEEEEec--CCEEEEccCCCcEEEEcCC--cceecccCCCCCeeEEEEe--CCEEEEEeCCCeEEE
Q 047325 33 QNGLIGSLVREEGHIYSLAAS--KDLLYTGSDSKNIRVWKNL--KEFCGFKASSGLVKAIVIS--GEKIFTGHQDGKIRV 106 (368)
Q Consensus 33 ~~~~~~~~~~h~~~i~~~~~~--~~~l~s~~~dg~i~iw~~~--~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~v 106 (368)
......++.||+.+|+++.|+ |..|++||.|+.|.+||+. .++..+.+|...|+..-|. .+.+++.+.|+.|++
T Consensus 96 s~~~~~tfngHK~AVt~l~fd~~G~rlaSGskDt~IIvwDlV~E~Gl~rL~GHkd~iT~~~F~~~~~~lvS~sKDs~iK~ 175 (888)
T KOG0306|consen 96 SEEILITFNGHKAAVTTLKFDKIGTRLASGSKDTDIIVWDLVGEEGLFRLRGHKDSITQALFLNGDSFLVSVSKDSMIKF 175 (888)
T ss_pred CCceeeeecccccceEEEEEcccCceEeecCCCccEEEEEeccceeeEEeecchHHHhHHhccCCCeEEEEeccCceEEE
Confidence 336778899999999999998 5699999999999999975 4566778888888888776 467888888888888
Q ss_pred EeecCCCccccccCCc---------------------cc--------------------------------cc-------
Q 047325 107 WKISPKNQSVHKRAGT---------------------LP--------------------------------TL------- 126 (368)
Q Consensus 107 w~~~~~~~~~~~~~~~---------------------~~--------------------------------~~------- 126 (368)
||+++..+........ .. ..
T Consensus 176 WdL~tqhCf~Thvd~r~Eiw~l~~~~~~lvt~~~dse~~v~~L~~~~D~~~~~~~~s~~~~G~~~rqsk~R~i~l~~d~s 255 (888)
T KOG0306|consen 176 WDLETQHCFETHVDHRGEIWALVLDEKLLVTAGTDSELKVWELAFEDDEKETNRYISTKLRGTFIRQSKGREINLVTDFS 255 (888)
T ss_pred EecccceeeeEEecccceEEEEEEecceEEEEecCCceEEEEeecccccccccccceeeccceeeeccCCceeEEeecCc
Confidence 8887644321100000 00 00
Q ss_pred eeeeec----------------------------------------------------------------------cCCC
Q 047325 127 KDIFKS----------------------------------------------------------------------SIKP 136 (368)
Q Consensus 127 ~~~~~~----------------------------------------------------------------------~~~~ 136 (368)
..++.+ ...+
T Consensus 256 ~r~~~c~g~d~~~e~frI~s~~E~~k~l~Kk~k~~Kkka~t~e~~~~v~~sl~~~i~r~~~ir~~~kiks~dv~~~~~~~ 335 (888)
T KOG0306|consen 256 DRFLVCQGADKVIELFRIRSKEEIAKILSKKLKRAKKKAETEENEDDVEKSLSDEIKRLETIRTSAKIKSFDVTPSGGTE 335 (888)
T ss_pred ccEEEEecchhhhhheeecCHHHHHHHHHHHHHHhhhhccccccccchhhhHHHHHHHHHheechhheeEEEEEecCCcc
Confidence 000000 0000
Q ss_pred Cc----------eeEecc-c---------ceeeeeecCCCEeEEEEcCCCCEEEEEeCCCcEEEEEccCCeEEEEeecCC
Q 047325 137 SN----------YIEVRR-H---------RTALWIRHSDAVSCMSLDQDCGLLYTASWDRTFKVWRISDSKCLESVSAHD 196 (368)
Q Consensus 137 ~~----------~~~~~~-~---------~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~ 196 (368)
.. +..+.. . ......||...|.+++++.+...+++|+ .+.|++|+..+.++++++...
T Consensus 336 ~~lv~l~nNtv~~ysl~~s~~~~p~~~~~~~i~~~GHR~dVRsl~vS~d~~~~~Sga-~~SikiWn~~t~kciRTi~~~- 413 (888)
T KOG0306|consen 336 NTLVLLANNTVEWYSLENSGKTSPEADRTSNIEIGGHRSDVRSLCVSSDSILLASGA-GESIKIWNRDTLKCIRTITCG- 413 (888)
T ss_pred eeEEEeecCceEEEEeccCCCCCccccccceeeeccchhheeEEEeecCceeeeecC-CCcEEEEEccCcceeEEeccc-
Confidence 00 000000 0 0123467999999999999887777776 478999999999999999743
Q ss_pred CceEEEEeCCCC-eEEEEcCCCeEEEEEcCCCCCCcccccceeeccccccEEEEEEcCCCCEEEEecCCCcEEEEeCCCc
Q 047325 197 DAVNSVVSSSEG-LIFTGSADGTVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSSSRSIVYCGSSDGLVNFWEREKQ 275 (368)
Q Consensus 197 ~~v~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~ 275 (368)
.+.+..|.|.+ ++++|...|.+.+||+... ..+.....|.+.|.+++.+||+..+++|+.|.+|++||..--
T Consensus 414 -y~l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS~------~l~Eti~AHdgaIWsi~~~pD~~g~vT~saDktVkfWdf~l~ 486 (888)
T KOG0306|consen 414 -YILASKFVPGDRYIVLGTKNGELQVFDLASA------SLVETIRAHDGAIWSISLSPDNKGFVTGSADKTVKFWDFKLV 486 (888)
T ss_pred -cEEEEEecCCCceEEEeccCCceEEEEeehh------hhhhhhhccccceeeeeecCCCCceEEecCCcEEEEEeEEEE
Confidence 78888999988 9999999999999999765 346677799999999999999999999999999999997521
Q ss_pred cc-----cc-------ee-eeccceEEEEEEeCCCEEEEeeCCCeEEEEecCCCceeeeEeeeccccCeeEEEEecCCee
Q 047325 276 LS-----HG-------GV-LKGHKLAVLCLAAAGKLVFSGSADKTICVWRRDGAIHTCLSVLTGHTGPVKCLAVEEDRDS 342 (368)
Q Consensus 276 ~~-----~~-------~~-~~~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~ 342 (368)
.. .. .. ......-...++||+++|+++--|++++||-+++. +....+.||.-||.+|..+||+.
T Consensus 487 ~~~~gt~~k~lsl~~~rtLel~ddvL~v~~Spdgk~LaVsLLdnTVkVyflDtl--KFflsLYGHkLPV~smDIS~DSk- 563 (888)
T KOG0306|consen 487 VSVPGTQKKVLSLKHTRTLELEDDVLCVSVSPDGKLLAVSLLDNTVKVYFLDTL--KFFLSLYGHKLPVLSMDISPDSK- 563 (888)
T ss_pred eccCcccceeeeeccceEEeccccEEEEEEcCCCcEEEEEeccCeEEEEEecce--eeeeeecccccceeEEeccCCcC-
Confidence 11 00 00 11122333567789999999999999999999886 66778899999999999999999
Q ss_pred eecCCcceEEEEEeeCCcccccccC
Q 047325 343 SSSTSSCAQRWIVYSGSLDKSDDDV 367 (368)
Q Consensus 343 ~~~~~~~~~~w~l~sg~~D~~v~i~ 367 (368)
.++|||.|++||||
T Consensus 564 -----------livTgSADKnVKiW 577 (888)
T KOG0306|consen 564 -----------LIVTGSADKNVKIW 577 (888)
T ss_pred -----------eEEeccCCCceEEe
Confidence 89999999999999
No 51
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=4.5e-34 Score=244.14 Aligned_cols=276 Identities=20% Similarity=0.322 Sum_probs=235.2
Q ss_pred ccCcCCcEEEEEecCC--EEEEccCCCcEEEEcCC--cceecccCCCCCeeEEEEe--CCEEEEEeCCCeEEEEeecCCC
Q 047325 40 LVREEGHIYSLAASKD--LLYTGSDSKNIRVWKNL--KEFCGFKASSGLVKAIVIS--GEKIFTGHQDGKIRVWKISPKN 113 (368)
Q Consensus 40 ~~~h~~~i~~~~~~~~--~l~s~~~dg~i~iw~~~--~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~vw~~~~~~ 113 (368)
+...+.+|..++|+|. .++++-..|.|++||.. ..+..|..|.++|..++|. ...+++|+.|-.|+||+..+.+
T Consensus 5 fEskSsRvKglsFHP~rPwILtslHsG~IQlWDYRM~tli~rFdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~rr 84 (1202)
T KOG0292|consen 5 FESKSSRVKGLSFHPKRPWILTSLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKTRR 84 (1202)
T ss_pred hhcccccccceecCCCCCEEEEeecCceeeeehhhhhhHHhhhhccCCccceeeecCCCCeEEecCCccEEEEEecccce
Confidence 4455678899999987 89999999999999976 5677899999999999998 6799999999999999998877
Q ss_pred ccccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcCCCCEEEEEeCCCcEEEEEccCCeEEEEee
Q 047325 114 QSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCGLLYTASWDRTFKVWRISDSKCLESVS 193 (368)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~ 193 (368)
+... +.||-+-|..+.|++.-..+++++.|.+|+||+..+++++..+.
T Consensus 85 clft--------------------------------L~GHlDYVRt~~FHheyPWIlSASDDQTIrIWNwqsr~~iavlt 132 (1202)
T KOG0292|consen 85 CLFT--------------------------------LLGHLDYVRTVFFHHEYPWILSASDDQTIRIWNWQSRKCIAVLT 132 (1202)
T ss_pred ehhh--------------------------------hccccceeEEeeccCCCceEEEccCCCeEEEEeccCCceEEEEe
Confidence 5443 34599999999999999999999999999999999999999999
Q ss_pred cCCCceEEEEeCCCC-eEEEEcCCCeEEEEEcCCCCCCc-----------------------ccccceeeccccccEEEE
Q 047325 194 AHDDAVNSVVSSSEG-LIFTGSADGTVKVWKREQHGKGT-----------------------KHSLAQTLLKQECAVTAL 249 (368)
Q Consensus 194 ~~~~~v~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~-----------------------~~~~~~~~~~~~~~i~~~ 249 (368)
+|...|.|..|+|.. .+++++-|.+|++||+....+.. .......+.+|...|+-+
T Consensus 133 GHnHYVMcAqFhptEDlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwa 212 (1202)
T KOG0292|consen 133 GHNHYVMCAQFHPTEDLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWA 212 (1202)
T ss_pred cCceEEEeeccCCccceEEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceE
Confidence 999999999999966 99999999999999986432210 111234567899999999
Q ss_pred EEcCCCCEEEEecCCCcEEEEeCCCc-cccceeeeccceEEEEEE--eCCCEEEEeeCCCeEEEEecCCCceeeeEeeec
Q 047325 250 VVSSSRSIVYCGSSDGLVNFWEREKQ-LSHGGVLKGHKLAVLCLA--AAGKLVFSGSADKTICVWRRDGAIHTCLSVLTG 326 (368)
Q Consensus 250 ~~~~~~~~l~~~~~dg~i~i~d~~~~-~~~~~~~~~~~~~~~~~~--~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~ 326 (368)
+|+|.-..+++|+.|..|++|.+... .-......+|...|.++- |..+++++.|+|++|+|||+... ..+++++.
T Consensus 213 AfhpTlpliVSG~DDRqVKlWrmnetKaWEvDtcrgH~nnVssvlfhp~q~lIlSnsEDksirVwDm~kR--t~v~tfrr 290 (1202)
T KOG0292|consen 213 AFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTCRGHYNNVSSVLFHPHQDLILSNSEDKSIRVWDMTKR--TSVQTFRR 290 (1202)
T ss_pred EecCCcceEEecCCcceeeEEEeccccceeehhhhcccCCcceEEecCccceeEecCCCccEEEEecccc--cceeeeec
Confidence 99999999999999999999998743 233356778988886655 45689999999999999999876 77888887
Q ss_pred cccCeeEEEEecCCeeeecCCcc
Q 047325 327 HTGPVKCLAVEEDRDSSSSTSSC 349 (368)
Q Consensus 327 h~~~v~~l~~~~~~~~~~~~~~~ 349 (368)
..+.-+.++-+|..+++|.+..+
T Consensus 291 endRFW~laahP~lNLfAAgHDs 313 (1202)
T KOG0292|consen 291 ENDRFWILAAHPELNLFAAGHDS 313 (1202)
T ss_pred cCCeEEEEEecCCcceeeeecCC
Confidence 88899999999999977776443
No 52
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=100.00 E-value=2.7e-33 Score=207.10 Aligned_cols=265 Identities=16% Similarity=0.222 Sum_probs=220.0
Q ss_pred eeccCcCCcEEEEEec--CCEEEEccCCCcEEEEcCCcc----eecccCCCCCeeEEEEe---CCEEEEEeCCCeEEEEe
Q 047325 38 GSLVREEGHIYSLAAS--KDLLYTGSDSKNIRVWKNLKE----FCGFKASSGLVKAIVIS---GEKIFTGHQDGKIRVWK 108 (368)
Q Consensus 38 ~~~~~h~~~i~~~~~~--~~~l~s~~~dg~i~iw~~~~~----~~~~~~~~~~v~~~~~~---~~~l~s~~~dg~i~vw~ 108 (368)
+.+++|.+.|.+++|+ |..|++|+.|+++++|++... .....+|.+.|..++|+ ++.+++++.|.+|++||
T Consensus 14 r~~~~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~wd 93 (313)
T KOG1407|consen 14 RELQGHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIWD 93 (313)
T ss_pred HHhhhhhhcceEEEEcccCceeeecccCCceEEEEecchhhhhhhcccCCCcchhhheeCCCCCcceEEecCCceEEEEE
Confidence 5688999999999996 669999999999999998743 23567899999999998 78999999999999999
Q ss_pred ecCCCccccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcCCCCEEEEEeCCCcEEEEEccCCeE
Q 047325 109 ISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCGLLYTASWDRTFKVWRISDSKC 188 (368)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~ 188 (368)
+..+++..... .+..-.-+.|+|+++++++++.|..|...|.++.+.
T Consensus 94 ~r~~k~~~~i~---------------------------------~~~eni~i~wsp~g~~~~~~~kdD~it~id~r~~~~ 140 (313)
T KOG1407|consen 94 IRSGKCTARIE---------------------------------TKGENINITWSPDGEYIAVGNKDDRITFIDARTYKI 140 (313)
T ss_pred eccCcEEEEee---------------------------------ccCcceEEEEcCCCCEEEEecCcccEEEEEecccce
Confidence 99888654443 233344688999999999999999999999999888
Q ss_pred EEEeecCCCceEEEEeCCCC-eEEEEcCCCeEEEEEcCCCCCCcccccceeeccccccEEEEEEcCCCCEEEEecCCCcE
Q 047325 189 LESVSAHDDAVNSVVSSSEG-LIFTGSADGTVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSSSRSIVYCGSSDGLV 267 (368)
Q Consensus 189 ~~~~~~~~~~v~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i 267 (368)
+...+ ....+..+.|+.++ +++.....|.|.|...-.. +++..+..|.....|+.|+|+|++||+|+.|..+
T Consensus 141 ~~~~~-~~~e~ne~~w~~~nd~Fflt~GlG~v~ILsypsL------kpv~si~AH~snCicI~f~p~GryfA~GsADAlv 213 (313)
T KOG1407|consen 141 VNEEQ-FKFEVNEISWNNSNDLFFLTNGLGCVEILSYPSL------KPVQSIKAHPSNCICIEFDPDGRYFATGSADALV 213 (313)
T ss_pred eehhc-ccceeeeeeecCCCCEEEEecCCceEEEEecccc------ccccccccCCcceEEEEECCCCceEeecccccee
Confidence 77665 34556778887666 6666677899999887543 5688889999999999999999999999999999
Q ss_pred EEEeCCCccccceeeeccceEE--EEEEeCCCEEEEeeCCCeEEEEecCCCceeeeEeeeccccCeeEEEEecCCeeeec
Q 047325 268 NFWEREKQLSHGGVLKGHKLAV--LCLAAAGKLVFSGSADKTICVWRRDGAIHTCLSVLTGHTGPVKCLAVEEDRDSSSS 345 (368)
Q Consensus 268 ~i~d~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~ 345 (368)
.+||++.-.+. +.+..+.-+| ++|+.||++||+|++|..|-|=+++++ ..+..++ +.++...++|+|...+||.
T Consensus 214 SLWD~~ELiC~-R~isRldwpVRTlSFS~dg~~lASaSEDh~IDIA~vetG--d~~~eI~-~~~~t~tVAWHPk~~LLAy 289 (313)
T KOG1407|consen 214 SLWDVDELICE-RCISRLDWPVRTLSFSHDGRMLASASEDHFIDIAEVETG--DRVWEIP-CEGPTFTVAWHPKRPLLAY 289 (313)
T ss_pred eccChhHhhhh-eeeccccCceEEEEeccCcceeeccCccceEEeEecccC--CeEEEee-ccCCceeEEecCCCceeeE
Confidence 99999875444 5555566666 556668999999999999999988887 5566664 8899999999999998775
Q ss_pred C
Q 047325 346 T 346 (368)
Q Consensus 346 ~ 346 (368)
+
T Consensus 290 A 290 (313)
T KOG1407|consen 290 A 290 (313)
T ss_pred E
Confidence 4
No 53
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=3.2e-33 Score=207.78 Aligned_cols=243 Identities=21% Similarity=0.321 Sum_probs=198.1
Q ss_pred ceecccCCCCCeeEEEEe---CCEEEEEeCCCeEEEEeecCCCccccccCCccccceeeeeccCCCCceeEecccceeee
Q 047325 74 EFCGFKASSGLVKAIVIS---GEKIFTGHQDGKIRVWKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALW 150 (368)
Q Consensus 74 ~~~~~~~~~~~v~~~~~~---~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (368)
.+..+++|.+.+..++|+ |..|++|+.|+.|++|+...+...... ...-
T Consensus 6 ~~~~~~gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck----------------------------~vld 57 (312)
T KOG0645|consen 6 LEQKLSGHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDSWTCK----------------------------TVLD 57 (312)
T ss_pred eEEeecCCCCcEEEEEeccCCceEEEeecCCceEEEEecCCCCcEEEE----------------------------Eecc
Confidence 345678999999999999 338999999999999999853211110 0011
Q ss_pred eecCCCEeEEEEcCCCCEEEEEeCCCcEEEEEccC--CeEEEEeecCCCceEEEEeCCCC-eEEEEcCCCeEEEEEcCCC
Q 047325 151 IRHSDAVSCMSLDQDCGLLYTASWDRTFKVWRISD--SKCLESVSAHDDAVNSVVSSSEG-LIFTGSADGTVKVWKREQH 227 (368)
Q Consensus 151 ~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~--~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~dg~i~i~d~~~~ 227 (368)
.+|+..|++++|+|.|++|++++.|.++.||.-.. .+++..+++|+..|.|++|+++| +|++++.|..|-||.+...
T Consensus 58 ~~hkrsVRsvAwsp~g~~La~aSFD~t~~Iw~k~~~efecv~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~ded 137 (312)
T KOG0645|consen 58 DGHKRSVRSVAWSPHGRYLASASFDATVVIWKKEDGEFECVATLEGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDED 137 (312)
T ss_pred ccchheeeeeeecCCCcEEEEeeccceEEEeecCCCceeEEeeeeccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCC
Confidence 24999999999999999999999999999998654 46889999999999999999999 9999999999999999854
Q ss_pred CCCcccccceeeccccccEEEEEEcCCCCEEEEecCCCcEEEEeCC--CccccceeeeccceEEEEEE--eCCCEEEEee
Q 047325 228 GKGTKHSLAQTLLKQECAVTALVVSSSRSIVYCGSSDGLVNFWERE--KQLSHGGVLKGHKLAVLCLA--AAGKLVFSGS 303 (368)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~--~~~~~~~~~~~~~~~~~~~~--~~~~~l~~~~ 303 (368)
.++.+...+..|...|..+.|+|...+|++++.|++|++|+-. ..-.....+.+|...+.++. +.|..|++++
T Consensus 138 ---dEfec~aVL~~HtqDVK~V~WHPt~dlL~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~G~rl~s~s 214 (312)
T KOG0645|consen 138 ---DEFECIAVLQEHTQDVKHVIWHPTEDLLFSCSYDNTIKVYRDEDDDDWECVQTLDGHENTVWSLAFDNIGSRLVSCS 214 (312)
T ss_pred ---CcEEEEeeeccccccccEEEEcCCcceeEEeccCCeEEEEeecCCCCeeEEEEecCccceEEEEEecCCCceEEEec
Confidence 5566788899999999999999999999999999999999866 23344567888987776554 5689999999
Q ss_pred CCCeEEEEecCCCceeeeEeeeccccCeeEEEEecCCeeeecCCcceEEEEEeeCCcccccccC
Q 047325 304 ADKTICVWRRDGAIHTCLSVLTGHTGPVKCLAVEEDRDSSSSTSSCAQRWIVYSGSLDKSDDDV 367 (368)
Q Consensus 304 ~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~w~l~sg~~D~~v~i~ 367 (368)
.|++++||..... .-..|+.++..++|. ++ .++|++.|+.||+|
T Consensus 215 dD~tv~Iw~~~~~------~~~~~sr~~Y~v~W~-~~-------------~IaS~ggD~~i~lf 258 (312)
T KOG0645|consen 215 DDGTVSIWRLYTD------LSGMHSRALYDVPWD-NG-------------VIASGGGDDAIRLF 258 (312)
T ss_pred CCcceEeeeeccC------cchhcccceEeeeec-cc-------------ceEeccCCCEEEEE
Confidence 9999999964432 112478899999999 55 46777777777765
No 54
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=5.7e-34 Score=209.86 Aligned_cols=257 Identities=19% Similarity=0.287 Sum_probs=212.8
Q ss_pred CCcEEEEcCC--cceeccc--CCCCCeeEEEEe---CCEEEEEeCCCeEEEEeecCCCccccccCCccccceeeeeccCC
Q 047325 63 SKNIRVWKNL--KEFCGFK--ASSGLVKAIVIS---GEKIFTGHQDGKIRVWKISPKNQSVHKRAGTLPTLKDIFKSSIK 135 (368)
Q Consensus 63 dg~i~iw~~~--~~~~~~~--~~~~~v~~~~~~---~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (368)
.|++.|-++. +.+.... .-...+..++|+ .+.+++++.||++++||+.....
T Consensus 37 ~G~L~ile~~~~~gi~e~~s~d~~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~~~s~--------------------- 95 (311)
T KOG0277|consen 37 NGRLFILEVTDPKGIQECQSYDTEDGLFDVAWSENHENQVIAASGDGSLRLFDLTMPSK--------------------- 95 (311)
T ss_pred CceEEEEecCCCCCeEEEEeeecccceeEeeecCCCcceEEEEecCceEEEeccCCCCc---------------------
Confidence 5788888874 3333322 235678899998 67899999999999999654332
Q ss_pred CCceeEecccceeeeeecCCCEeEEEEcC-CCCEEEEEeCCCcEEEEEccCCeEEEEeecCCCceEEEEeCCCC--eEEE
Q 047325 136 PSNYIEVRRHRTALWIRHSDAVSCMSLDQ-DCGLLYTASWDRTFKVWRISDSKCLESVSAHDDAVNSVVSSSEG--LIFT 212 (368)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~--~l~~ 212 (368)
+...++.|..+|.++.|++ ++..+++++.|++|++||...++.+.++.+|...|....|+|.. .+++
T Consensus 96 ----------Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~Sv~Tf~gh~~~Iy~a~~sp~~~nlfas 165 (311)
T KOG0277|consen 96 ----------PIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPNSVQTFNGHNSCIYQAAFSPHIPNLFAS 165 (311)
T ss_pred ----------chhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCCCcceEeecCCccEEEEEecCCCCCCeEEE
Confidence 2233445999999999998 56678888999999999999999999999999999999999976 9999
Q ss_pred EcCCCeEEEEEcCCCCCCcccccceeeccccccEEEEEEcC-CCCEEEEecCCCcEEEEeCCCccccceeeeccceEEEE
Q 047325 213 GSADGTVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSS-SRSIVYCGSSDGLVNFWEREKQLSHGGVLKGHKLAVLC 291 (368)
Q Consensus 213 ~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~ 291 (368)
++.|+.+++||++..++ . ..+..|...|.++.|+. +.+.|++|+.|+.|+.||+++-+.+...+.+|...|..
T Consensus 166 ~Sgd~~l~lwdvr~~gk-----~-~~i~ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r~pl~eL~gh~~AVRk 239 (311)
T KOG0277|consen 166 ASGDGTLRLWDVRSPGK-----F-MSIEAHNSEILCCDWSKYNHNVLATGGVDNLVRGWDIRNLRTPLFELNGHGLAVRK 239 (311)
T ss_pred ccCCceEEEEEecCCCc-----e-eEEEeccceeEeecccccCCcEEEecCCCceEEEEehhhccccceeecCCceEEEE
Confidence 99999999999997754 2 23777888999999997 77899999999999999999988888899999998866
Q ss_pred EEeC---CCEEEEeeCCCeEEEEecCCCceeeeEeeeccccCeeEEEEecCCeeeecCCcceEEEEEeeCCcccccccCC
Q 047325 292 LAAA---GKLVFSGSADKTICVWRRDGAIHTCLSVLTGHTGPVKCLAVEEDRDSSSSTSSCAQRWIVYSGSLDKSDDDVH 368 (368)
Q Consensus 292 ~~~~---~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~w~l~sg~~D~~v~i~h 368 (368)
+.+. ..+|++++.|-+++|||...+ ...+.+...|++-+..+.|++-... .+++.+.|..+.||.
T Consensus 240 vk~Sph~~~lLaSasYDmT~riw~~~~~-ds~~e~~~~HtEFv~g~Dws~~~~~-----------~vAs~gWDe~l~Vw~ 307 (311)
T KOG0277|consen 240 VKFSPHHASLLASASYDMTVRIWDPERQ-DSAIETVDHHTEFVCGLDWSLFDPG-----------QVASTGWDELLYVWN 307 (311)
T ss_pred EecCcchhhHhhhccccceEEecccccc-hhhhhhhhccceEEeccccccccCc-----------eeeecccccceeeec
Confidence 6543 678999999999999998754 2556677789999999999986543 789999999999983
No 55
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=100.00 E-value=1.3e-33 Score=219.26 Aligned_cols=270 Identities=20% Similarity=0.370 Sum_probs=214.9
Q ss_pred CCCceeeeccCcCCcEEEEEec-CC----EEEEccCCCcEEEEcCCcc------eecccCCCCCeeEEEEe--CCEEEEE
Q 047325 32 PQNGLIGSLVREEGHIYSLAAS-KD----LLYTGSDSKNIRVWKNLKE------FCGFKASSGLVKAIVIS--GEKIFTG 98 (368)
Q Consensus 32 ~~~~~~~~~~~h~~~i~~~~~~-~~----~l~s~~~dg~i~iw~~~~~------~~~~~~~~~~v~~~~~~--~~~l~s~ 98 (368)
..+.....+.||.++|.++++- .+ .|++++.|.++++|..+.. .....+|...|.++... +..+++|
T Consensus 132 ~~Gk~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~~~~~~~~~~~~GHk~~V~sVsv~~sgtr~~Sg 211 (423)
T KOG0313|consen 132 LKGKSIKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNVGENKVKALKVCRGHKRSVDSVSVDSSGTRFCSG 211 (423)
T ss_pred cCCceEEEEecCCcceeeeEEEecCCccceEEEecCCceEEEEEecCchhhhhHHhHhcccccceeEEEecCCCCeEEee
Confidence 3467788899999999988873 22 6999999999999976532 33445999999999987 8899999
Q ss_pred eCCCeEEEEeecCCCccccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcCCCCEEEEEeCCCcE
Q 047325 99 HQDGKIRVWKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCGLLYTASWDRTF 178 (368)
Q Consensus 99 ~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i 178 (368)
+.|.+|++|+.+............... ...........+.+...+.||..+|.++.|++ ...+++++.|.+|
T Consensus 212 S~D~~lkiWs~~~~~~~~~E~~s~~rr-------k~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d-~~v~yS~SwDHTI 283 (423)
T KOG0313|consen 212 SWDTMLKIWSVETDEEDELESSSNRRR-------KKQKREKEGGTRTPLVTLEGHTEPVSSVVWSD-ATVIYSVSWDHTI 283 (423)
T ss_pred cccceeeecccCCCccccccccchhhh-------hhhhhhhcccccCceEEecccccceeeEEEcC-CCceEeecccceE
Confidence 999999999944332211111000000 00000011123345667889999999999998 6689999999999
Q ss_pred EEEEccCCeEEEEeecCCCceEEEEeCCCC-eEEEEcCCCeEEEEEcCCCCCCcccccceeeccccccEEEEEEcC-CCC
Q 047325 179 KVWRISDSKCLESVSAHDDAVNSVVSSSEG-LIFTGSADGTVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSS-SRS 256 (368)
Q Consensus 179 ~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~ 256 (368)
+.||+.++..+.++.. ...++|+..+|.. +|++|+.|..|++||.|.++ .......+.+|...|.++.|+| +..
T Consensus 284 k~WDletg~~~~~~~~-~ksl~~i~~~~~~~Ll~~gssdr~irl~DPR~~~---gs~v~~s~~gH~nwVssvkwsp~~~~ 359 (423)
T KOG0313|consen 284 KVWDLETGGLKSTLTT-NKSLNCISYSPLSKLLASGSSDRHIRLWDPRTGD---GSVVSQSLIGHKNWVSSVKWSPTNEF 359 (423)
T ss_pred EEEEeecccceeeeec-CcceeEeecccccceeeecCCCCceeecCCCCCC---CceeEEeeecchhhhhheecCCCCce
Confidence 9999999999988875 4678999999988 99999999999999999873 3345678889999999999999 456
Q ss_pred EEEEecCCCcEEEEeCCCccccceeeeccceEEEEEEeC-CCEEEEeeCCCeEEEEec
Q 047325 257 IVYCGSSDGLVNFWEREKQLSHGGVLKGHKLAVLCLAAA-GKLVFSGSADKTICVWRR 313 (368)
Q Consensus 257 ~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~~~dg~i~iw~~ 313 (368)
+|++|+.|+++++||+++...+...+.+|...++++.+. +.+|++|+.|++|+|+.-
T Consensus 360 ~~~S~S~D~t~klWDvRS~k~plydI~~h~DKvl~vdW~~~~~IvSGGaD~~l~i~~~ 417 (423)
T KOG0313|consen 360 QLVSGSYDNTVKLWDVRSTKAPLYDIAGHNDKVLSVDWNEGGLIVSGGADNKLRIFKG 417 (423)
T ss_pred EEEEEecCCeEEEEEeccCCCcceeeccCCceEEEEeccCCceEEeccCcceEEEecc
Confidence 788999999999999999887778999999999999995 669999999999999953
No 56
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=7e-34 Score=216.33 Aligned_cols=320 Identities=18% Similarity=0.285 Sum_probs=243.8
Q ss_pred CCCceeeeccCcCCcEEEEEecC--CEEEEccCCCcEEEEcCCcc--eecccCCCCCeeEEEEe--CCEEEEEeCCCeEE
Q 047325 32 PQNGLIGSLVREEGHIYSLAASK--DLLYTGSDSKNIRVWKNLKE--FCGFKASSGLVKAIVIS--GEKIFTGHQDGKIR 105 (368)
Q Consensus 32 ~~~~~~~~~~~h~~~i~~~~~~~--~~l~s~~~dg~i~iw~~~~~--~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~ 105 (368)
....+++.+.||.+.|+.++... .++.+++.|.+.+||.++.. +..+.+|.+.|+++.|. +..+++++.|++-.
T Consensus 136 ~~~~lvre~~GHkDGiW~Vaa~~tqpi~gtASADhTA~iWs~Esg~CL~~Y~GH~GSVNsikfh~s~~L~lTaSGD~taH 215 (481)
T KOG0300|consen 136 VKFRLVRELEGHKDGIWHVAADSTQPICGTASADHTARIWSLESGACLATYTGHTGSVNSIKFHNSGLLLLTASGDETAH 215 (481)
T ss_pred eeEeehhhhcccccceeeehhhcCCcceeecccccceeEEeeccccceeeecccccceeeEEeccccceEEEccCCcchH
Confidence 34567788999999999998863 39999999999999998854 66889999999999998 77899999999999
Q ss_pred EEeecC----CCccccccC--CccccceeeeeccCCCCceeE--ecccceeeeeecCCCEeEEEEcCCCCEEEEEeCCCc
Q 047325 106 VWKISP----KNQSVHKRA--GTLPTLKDIFKSSIKPSNYIE--VRRHRTALWIRHSDAVSCMSLDQDCGLLYTASWDRT 177 (368)
Q Consensus 106 vw~~~~----~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~ 177 (368)
||...- .+....... .......+......+.....+ ..+.+...+.+|...|.+..|...++.+++++.|.+
T Consensus 216 IW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~gg~Q~vTaSWDRT 295 (481)
T KOG0300|consen 216 IWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLAGGQQMVTASWDRT 295 (481)
T ss_pred HHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEehhhhcCcceeeeeecccc
Confidence 997321 111110000 000000000000000000111 122345567889999999999999999999999999
Q ss_pred EEEEEccCCeEEEEeecCCCceEEEEeCCCC-eEEEEcCCCeEEEEEcCCCCCCcccccceeeccccccEEEEEEcCCCC
Q 047325 178 FKVWRISDSKCLESVSAHDDAVNSVVSSSEG-LIFTGSADGTVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSSSRS 256 (368)
Q Consensus 178 i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 256 (368)
-.+||+++++++..+.+|+...+.++-+|.. ++++.+.|.+.++||++.. ...+..+.+|...|++..|..+ .
T Consensus 296 AnlwDVEtge~v~~LtGHd~ELtHcstHptQrLVvTsSrDtTFRLWDFRea-----I~sV~VFQGHtdtVTS~vF~~d-d 369 (481)
T KOG0300|consen 296 ANLWDVETGEVVNILTGHDSELTHCSTHPTQRLVVTSSRDTTFRLWDFREA-----IQSVAVFQGHTDTVTSVVFNTD-D 369 (481)
T ss_pred ceeeeeccCceeccccCcchhccccccCCcceEEEEeccCceeEeccchhh-----cceeeeecccccceeEEEEecC-C
Confidence 9999999999999999999999999999988 8889999999999999843 2467789999999999999875 5
Q ss_pred EEEEecCCCcEEEEeCCCccccceeeec-cceEEEEEEeCCCEEEEeeCCCeEEEEecCCCceeeeE--eeeccccCeeE
Q 047325 257 IVYCGSSDGLVNFWEREKQLSHGGVLKG-HKLAVLCLAAAGKLVFSGSADKTICVWRRDGAIHTCLS--VLTGHTGPVKC 333 (368)
Q Consensus 257 ~l~~~~~dg~i~i~d~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~--~~~~h~~~v~~ 333 (368)
.+++|+.|.+|++||+++...+...+.. ....-+.++..+..|+.--++..|++||+.......+- .-.+|...|.|
T Consensus 370 ~vVSgSDDrTvKvWdLrNMRsplATIRtdS~~NRvavs~g~~iIAiPhDNRqvRlfDlnG~RlaRlPrtsRqgHrRMV~c 449 (481)
T KOG0300|consen 370 RVVSGSDDRTVKVWDLRNMRSPLATIRTDSPANRVAVSKGHPIIAIPHDNRQVRLFDLNGNRLARLPRTSRQGHRRMVTC 449 (481)
T ss_pred ceeecCCCceEEEeeeccccCcceeeecCCccceeEeecCCceEEeccCCceEEEEecCCCccccCCcccccccceeeee
Confidence 6889999999999999987766555543 33444666777789999999999999999765322222 34689999999
Q ss_pred EEEecCCeeeecCCcceEEEEEeeCCcccccccC
Q 047325 334 LAVEEDRDSSSSTSSCAQRWIVYSGSLDKSDDDV 367 (368)
Q Consensus 334 l~~~~~~~~~~~~~~~~~~w~l~sg~~D~~v~i~ 367 (368)
++|..+... -.|++++.|+.+-=|
T Consensus 450 ~AW~eehp~----------cnLftcGFDR~v~gW 473 (481)
T KOG0300|consen 450 CAWLEEHPA----------CNLFTCGFDRMVAGW 473 (481)
T ss_pred eeccccCcc----------cccccccccceeeee
Confidence 999987653 168888888877655
No 57
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=3.9e-33 Score=234.37 Aligned_cols=276 Identities=24% Similarity=0.346 Sum_probs=229.3
Q ss_pred eeccCcCCcEEEEEecCC-EEEEccCCCcEEEEcCCcceecccCCCCCeeEEEEe--CCEEEEEeCCCeEEEEeecCCCc
Q 047325 38 GSLVREEGHIYSLAASKD-LLYTGSDSKNIRVWKNLKEFCGFKASSGLVKAIVIS--GEKIFTGHQDGKIRVWKISPKNQ 114 (368)
Q Consensus 38 ~~~~~h~~~i~~~~~~~~-~l~s~~~dg~i~iw~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~vw~~~~~~~ 114 (368)
.++.||...|.+++++.+ .++..+..+.+++|+..+..+..+...+.+.+..|- +.++++|...|.+.++|+.....
T Consensus 367 i~~~GHR~dVRsl~vS~d~~~~~Sga~~SikiWn~~t~kciRTi~~~y~l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS~~l 446 (888)
T KOG0306|consen 367 IEIGGHRSDVRSLCVSSDSILLASGAGESIKIWNRDTLKCIRTITCGYILASKFVPGDRYIVLGTKNGELQVFDLASASL 446 (888)
T ss_pred eeeccchhheeEEEeecCceeeeecCCCcEEEEEccCcceeEEeccccEEEEEecCCCceEEEeccCCceEEEEeehhhh
Confidence 457899999999999877 333334457899999886555444444577777776 77999999999999999988765
Q ss_pred cccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcCCCCEEEEEeCCCcEEEEEccC-----CeEE
Q 047325 115 SVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCGLLYTASWDRTFKVWRISD-----SKCL 189 (368)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~-----~~~~ 189 (368)
...... |.+.|.+++..||+..+++|+.|.+|++||..- +...
T Consensus 447 ~Eti~A--------------------------------HdgaIWsi~~~pD~~g~vT~saDktVkfWdf~l~~~~~gt~~ 494 (888)
T KOG0306|consen 447 VETIRA--------------------------------HDGAIWSISLSPDNKGFVTGSADKTVKFWDFKLVVSVPGTQK 494 (888)
T ss_pred hhhhhc--------------------------------cccceeeeeecCCCCceEEecCCcEEEEEeEEEEeccCcccc
Confidence 444432 999999999999999999999999999999742 1111
Q ss_pred --------EEeecCCCceEEEEeCCCC-eEEEEcCCCeEEEEEcCCCCCCcccccceeeccccccEEEEEEcCCCCEEEE
Q 047325 190 --------ESVSAHDDAVNSVVSSSEG-LIFTGSADGTVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSSSRSIVYC 260 (368)
Q Consensus 190 --------~~~~~~~~~v~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~ 260 (368)
.++ .-+..|.|+.++||+ +|+++--|.++++|-+++. +....+.+|.-||.|+..+||++.+++
T Consensus 495 k~lsl~~~rtL-el~ddvL~v~~Spdgk~LaVsLLdnTVkVyflDtl------KFflsLYGHkLPV~smDIS~DSklivT 567 (888)
T KOG0306|consen 495 KVLSLKHTRTL-ELEDDVLCVSVSPDGKLLAVSLLDNTVKVYFLDTL------KFFLSLYGHKLPVLSMDISPDSKLIVT 567 (888)
T ss_pred eeeeeccceEE-eccccEEEEEEcCCCcEEEEEeccCeEEEEEecce------eeeeeecccccceeEEeccCCcCeEEe
Confidence 112 235679999999999 9999999999999999765 456678899999999999999999999
Q ss_pred ecCCCcEEEEeCCCccccceeeeccceEEEEEE--eCCCEEEEeeCCCeEEEEecCCCceeeeEeeeccccCeeEEEEec
Q 047325 261 GSSDGLVNFWEREKQLSHGGVLKGHKLAVLCLA--AAGKLVFSGSADKTICVWRRDGAIHTCLSVLTGHTGPVKCLAVEE 338 (368)
Q Consensus 261 ~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~l~~~~ 338 (368)
|+.|..|++|-++-+.+. ..+.+|...|+++. |....+++++.|+.|+-||-+. ...++.+.+|...|++++.+|
T Consensus 568 gSADKnVKiWGLdFGDCH-KS~fAHdDSvm~V~F~P~~~~FFt~gKD~kvKqWDg~k--Fe~iq~L~~H~~ev~cLav~~ 644 (888)
T KOG0306|consen 568 GSADKNVKIWGLDFGDCH-KSFFAHDDSVMSVQFLPKTHLFFTCGKDGKVKQWDGEK--FEEIQKLDGHHSEVWCLAVSP 644 (888)
T ss_pred ccCCCceEEeccccchhh-hhhhcccCceeEEEEcccceeEEEecCcceEEeechhh--hhhheeeccchheeeeeEEcC
Confidence 999999999999987776 46667888886655 6788999999999999996554 488999999999999999999
Q ss_pred CCeeeecCCcceEEEEEeeCCcccccccC
Q 047325 339 DRDSSSSTSSCAQRWIVYSGSLDKSDDDV 367 (368)
Q Consensus 339 ~~~~~~~~~~~~~~w~l~sg~~D~~v~i~ 367 (368)
+|. +++|+|.|.+||+|
T Consensus 645 ~G~------------~vvs~shD~sIRlw 661 (888)
T KOG0306|consen 645 NGS------------FVVSSSHDKSIRLW 661 (888)
T ss_pred CCC------------eEEeccCCceeEee
Confidence 999 78999999999998
No 58
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1.3e-33 Score=240.46 Aligned_cols=249 Identities=20% Similarity=0.364 Sum_probs=194.4
Q ss_pred cCCCceeeecc-CcCCcEEEEEecC--CEEEEccCCCcEEEEcCCc----------------------------------
Q 047325 31 LPQNGLIGSLV-REEGHIYSLAASK--DLLYTGSDSKNIRVWKNLK---------------------------------- 73 (368)
Q Consensus 31 ~~~~~~~~~~~-~h~~~i~~~~~~~--~~l~s~~~dg~i~iw~~~~---------------------------------- 73 (368)
+..-...+.+. .|.+.|+++.|++ .|||+||.|+.|+||.+..
T Consensus 253 lsal~~~Qe~~~ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~ 332 (712)
T KOG0283|consen 253 LSALTVVQEISNAHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKI 332 (712)
T ss_pred ceeeEEeeccccccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCccccccccc
Confidence 33344455566 8999999999974 4999999999999996321
Q ss_pred ----------------------------ceecccCCCCCeeEEEEe-CCEEEEEeCCCeEEEEeecCCCccccccCCccc
Q 047325 74 ----------------------------EFCGFKASSGLVKAIVIS-GEKIFTGHQDGKIRVWKISPKNQSVHKRAGTLP 124 (368)
Q Consensus 74 ----------------------------~~~~~~~~~~~v~~~~~~-~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~ 124 (368)
+++.|.+|.+.|..|.|+ +++|++++.|.+||+|++...+++..+.
T Consensus 333 ~~~~s~~~~~~~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn~fLLSSSMDKTVRLWh~~~~~CL~~F~----- 407 (712)
T KOG0283|consen 333 SSRTSSSRKGSQSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKNNFLLSSSMDKTVRLWHPGRKECLKVFS----- 407 (712)
T ss_pred cccccccccccCCccccCCCccccccccchhhhhccchhheecccccCCeeEeccccccEEeecCCCcceeeEEe-----
Confidence 233477899999999999 8899999999999999999877655443
Q ss_pred cceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcC-CCCEEEEEeCCCcEEEEEccCCeEEEEeecCCCceEEEE
Q 047325 125 TLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQ-DCGLLYTASWDRTFKVWRISDSKCLESVSAHDDAVNSVV 203 (368)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~ 203 (368)
|.+-|+|++|+| |.++|++|+-||.|+||++...+.+.-.. -..-|++++
T Consensus 408 ----------------------------HndfVTcVaFnPvDDryFiSGSLD~KvRiWsI~d~~Vv~W~D-l~~lITAvc 458 (712)
T KOG0283|consen 408 ----------------------------HNDFVTCVAFNPVDDRYFISGSLDGKVRLWSISDKKVVDWND-LRDLITAVC 458 (712)
T ss_pred ----------------------------cCCeeEEEEecccCCCcEeecccccceEEeecCcCeeEeehh-hhhhheeEE
Confidence 999999999999 78899999999999999998877665544 347899999
Q ss_pred eCCCC-eEEEEcCCCeEEEEEcCCCCCCcccccc---eeeccccccEEEEEEcCCC-CEEEEecCCCcEEEEeCCCcccc
Q 047325 204 SSSEG-LIFTGSADGTVKVWKREQHGKGTKHSLA---QTLLKQECAVTALVVSSSR-SIVYCGSSDGLVNFWEREKQLSH 278 (368)
Q Consensus 204 ~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~---~~~~~~~~~i~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~ 278 (368)
+.|+| ..++|+.+|.+++|+.+........... .....+. .|+.+.|.|.. ..+++.+.|..|+|||.+.....
T Consensus 459 y~PdGk~avIGt~~G~C~fY~t~~lk~~~~~~I~~~~~Kk~~~~-rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv 537 (712)
T KOG0283|consen 459 YSPDGKGAVIGTFNGYCRFYDTEGLKLVSDFHIRLHNKKKKQGK-RITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLV 537 (712)
T ss_pred eccCCceEEEEEeccEEEEEEccCCeEEEeeeEeeccCccccCc-eeeeeEecCCCCCeEEEecCCCceEEEeccchhhh
Confidence 99999 9999999999999999865321111110 0011223 79999999843 45778889999999999765444
Q ss_pred ceee---eccceEEEEEEeCCCEEEEeeCCCeEEEEecC
Q 047325 279 GGVL---KGHKLAVLCLAAAGKLVFSGSADKTICVWRRD 314 (368)
Q Consensus 279 ~~~~---~~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~ 314 (368)
.... ..+......|+.||++|+++++|..|++|+++
T Consensus 538 ~KfKG~~n~~SQ~~Asfs~Dgk~IVs~seDs~VYiW~~~ 576 (712)
T KOG0283|consen 538 HKFKGFRNTSSQISASFSSDGKHIVSASEDSWVYIWKND 576 (712)
T ss_pred hhhcccccCCcceeeeEccCCCEEEEeecCceEEEEeCC
Confidence 2222 22233346778899999999999999999973
No 59
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=100.00 E-value=3.5e-33 Score=210.51 Aligned_cols=240 Identities=22% Similarity=0.334 Sum_probs=197.7
Q ss_pred CCcceecccCCCCCeeEEEEe--CCEEEEEeCCCeEEEEeecCCCccccccCCccccceeeeeccCCCCceeEeccccee
Q 047325 71 NLKEFCGFKASSGLVKAIVIS--GEKIFTGHQDGKIRVWKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTA 148 (368)
Q Consensus 71 ~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (368)
+...+..+.+|.+.|+.+.|+ |.+|++|+.|..|.+|++....+. ..
T Consensus 36 l~ap~m~l~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdceN-------------------------------~~ 84 (338)
T KOG0265|consen 36 LQAPIMLLPGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDCEN-------------------------------FW 84 (338)
T ss_pred ccchhhhcCCCcceEEEEEECCCCCeEeecCCcceEEEEeccccccc-------------------------------ee
Confidence 344566788999999999998 889999999999999997655421 12
Q ss_pred eeeecCCCEeEEEEcCCCCEEEEEeCCCcEEEEEccCCeEEEEeecCCCceEEEEeCCCC--eEEEEcCCCeEEEEEcCC
Q 047325 149 LWIRHSDAVSCMSLDQDCGLLYTASWDRTFKVWRISDSKCLESVSAHDDAVNSVVSSSEG--LIFTGSADGTVKVWKREQ 226 (368)
Q Consensus 149 ~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~--~l~~~~~dg~i~i~d~~~ 226 (368)
.+.+|.+.|..+.|.+|++.+++++.|.+++.||+++|+.+..+++|..-|+.+.-..-| ++.+++.|+++++||+|.
T Consensus 85 ~lkgHsgAVM~l~~~~d~s~i~S~gtDk~v~~wD~~tG~~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~ 164 (338)
T KOG0265|consen 85 VLKGHSGAVMELHGMRDGSHILSCGTDKTVRGWDAETGKRIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRK 164 (338)
T ss_pred eeccccceeEeeeeccCCCEEEEecCCceEEEEecccceeeehhccccceeeecCccccCCeEEEecCCCceEEEEeecc
Confidence 234599999999999999999999999999999999999999999999999999866666 788899999999999996
Q ss_pred CCCCcccccceeeccccccEEEEEEcCCCCEEEEecCCCcEEEEeCCCccccceeeeccceEEEEE--EeCCCEEEEeeC
Q 047325 227 HGKGTKHSLAQTLLKQECAVTALVVSSSRSIVYCGSSDGLVNFWEREKQLSHGGVLKGHKLAVLCL--AAAGKLVFSGSA 304 (368)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~--~~~~~~l~~~~~ 304 (368)
.. .......+..++++.|...+..+.+|+-|+.|++||++..... ....+|..+|+.+ +++|.++.+-+.
T Consensus 165 k~-------~~~t~~~kyqltAv~f~d~s~qv~sggIdn~ikvWd~r~~d~~-~~lsGh~DtIt~lsls~~gs~llsnsM 236 (338)
T KOG0265|consen 165 KE-------AIKTFENKYQLTAVGFKDTSDQVISGGIDNDIKVWDLRKNDGL-YTLSGHADTITGLSLSRYGSFLLSNSM 236 (338)
T ss_pred cc-------hhhccccceeEEEEEecccccceeeccccCceeeeccccCcce-EEeecccCceeeEEeccCCCccccccc
Confidence 52 2223345667999999999999999999999999999987655 7889999998554 578999999999
Q ss_pred CCeEEEEecCCC--ceeeeEeeeccc----cCeeEEEEecCCeeeecCCcc
Q 047325 305 DKTICVWRRDGA--IHTCLSVLTGHT----GPVKCLAVEEDRDSSSSTSSC 349 (368)
Q Consensus 305 dg~i~iw~~~~~--~~~~~~~~~~h~----~~v~~l~~~~~~~~~~~~~~~ 349 (368)
|.++++||++.. ..+++..+.+|. ......+|+|++..+..++.+
T Consensus 237 d~tvrvwd~rp~~p~~R~v~if~g~~hnfeknlL~cswsp~~~~i~ags~d 287 (338)
T KOG0265|consen 237 DNTVRVWDVRPFAPSQRCVKIFQGHIHNFEKNLLKCSWSPNGTKITAGSAD 287 (338)
T ss_pred cceEEEEEecccCCCCceEEEeecchhhhhhhcceeeccCCCCcccccccc
Confidence 999999999742 345577776654 235677999999955444333
No 60
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=100.00 E-value=2.9e-34 Score=225.14 Aligned_cols=289 Identities=19% Similarity=0.292 Sum_probs=230.0
Q ss_pred cccccCCCceeeeccCcCCcEEEEEecC--CEEEEccCCCcEEEEcCCcc----eecccCCCCCeeEEEEe--CCEEEEE
Q 047325 27 FEENLPQNGLIGSLVREEGHIYSLAASK--DLLYTGSDSKNIRVWKNLKE----FCGFKASSGLVKAIVIS--GEKIFTG 98 (368)
Q Consensus 27 ~~~~~~~~~~~~~~~~h~~~i~~~~~~~--~~l~s~~~dg~i~iw~~~~~----~~~~~~~~~~v~~~~~~--~~~l~s~ 98 (368)
+.++.-+......+..|.+.+..+.|-. +.|++|+.|..|++|++... ...+.+..++|+++.|+ +.+++++
T Consensus 158 ~v~~~lpS~~~~~ld~h~gev~~v~~l~~sdtlatgg~Dr~Ik~W~v~~~k~~~~~tLaGs~g~it~~d~d~~~~~~iAa 237 (459)
T KOG0288|consen 158 FVEDTLPSRALFVLDAHEGEVHDVEFLRNSDTLATGGSDRIIKLWNVLGEKSELISTLAGSLGNITSIDFDSDNKHVIAA 237 (459)
T ss_pred hhhcccchhhhhhhhccccccceeEEccCcchhhhcchhhhhhhhhcccchhhhhhhhhccCCCcceeeecCCCceEEee
Confidence 3344444455566889999999999964 49999999999999998643 45677888999999998 7899999
Q ss_pred eCCCeEEEEeecCCCccccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcCCCCEEEEEeCCCcE
Q 047325 99 HQDGKIRVWKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCGLLYTASWDRTF 178 (368)
Q Consensus 99 ~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i 178 (368)
+.|+.+++|+++..+... .+.||.+.|+++.|......+++|+.|.+|
T Consensus 238 s~d~~~r~Wnvd~~r~~~--------------------------------TLsGHtdkVt~ak~~~~~~~vVsgs~DRti 285 (459)
T KOG0288|consen 238 SNDKNLRLWNVDSLRLRH--------------------------------TLSGHTDKVTAAKFKLSHSRVVSGSADRTI 285 (459)
T ss_pred cCCCceeeeeccchhhhh--------------------------------hhcccccceeeehhhccccceeeccccchh
Confidence 999999999998876433 344599999999999877779999999999
Q ss_pred EEEEccCCeEEEEeecCCCceEEEEeCCCCeEEEEcCCCeEEEEEcCCCCCCcccccceeeccccccEEEEEEcCCCCEE
Q 047325 179 KVWRISDSKCLESVSAHDDAVNSVVSSSEGLIFTGSADGTVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSSSRSIV 258 (368)
Q Consensus 179 ~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l 258 (368)
++||+....+..++- ....+..|... ...+++|-.|+.|++||++... +..... ..+.|+++..++++..|
T Consensus 286 K~WDl~k~~C~kt~l-~~S~cnDI~~~-~~~~~SgH~DkkvRfwD~Rs~~------~~~sv~-~gg~vtSl~ls~~g~~l 356 (459)
T KOG0288|consen 286 KLWDLQKAYCSKTVL-PGSQCNDIVCS-ISDVISGHFDKKVRFWDIRSAD------KTRSVP-LGGRVTSLDLSMDGLEL 356 (459)
T ss_pred hhhhhhhhheecccc-ccccccceEec-ceeeeecccccceEEEeccCCc------eeeEee-cCcceeeEeeccCCeEE
Confidence 999999988877664 34556666665 2378899999999999998763 233333 34489999999999999
Q ss_pred EEecCCCcEEEEeCCCccccc-----eeeeccceEEEEEEeCCCEEEEeeCCCeEEEEecCCCceeeeEeeeccccCeeE
Q 047325 259 YCGSSDGLVNFWEREKQLSHG-----GVLKGHKLAVLCLAAAGKLVFSGSADKTICVWRRDGAIHTCLSVLTGHTGPVKC 333 (368)
Q Consensus 259 ~~~~~dg~i~i~d~~~~~~~~-----~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~ 333 (368)
.+++.|.++.+.|+++..... ....+|.-.-..|+|++.|+++||.||.|+||++.+++.+.+.........|++
T Consensus 357 LsssRDdtl~viDlRt~eI~~~~sA~g~k~asDwtrvvfSpd~~YvaAGS~dgsv~iW~v~tgKlE~~l~~s~s~~aI~s 436 (459)
T KOG0288|consen 357 LSSSRDDTLKVIDLRTKEIRQTFSAEGFKCASDWTRVVFSPDGSYVAAGSADGSVYIWSVFTGKLEKVLSLSTSNAAITS 436 (459)
T ss_pred eeecCCCceeeeecccccEEEEeeccccccccccceeEECCCCceeeeccCCCcEEEEEccCceEEEEeccCCCCcceEE
Confidence 999999999999999765432 223356666688999999999999999999999988744433333322336999
Q ss_pred EEEecCCeeeecCCcceEEEEEeeCCcccccccCC
Q 047325 334 LAVEEDRDSSSSTSSCAQRWIVYSGSLDKSDDDVH 368 (368)
Q Consensus 334 l~~~~~~~~~~~~~~~~~~w~l~sg~~D~~v~i~h 368 (368)
++|+|.|. .+++++.++.+.+|.
T Consensus 437 ~~W~~sG~------------~Llsadk~~~v~lW~ 459 (459)
T KOG0288|consen 437 LSWNPSGS------------GLLSADKQKAVTLWT 459 (459)
T ss_pred EEEcCCCc------------hhhcccCCcceEecC
Confidence 99999999 677788888888873
No 61
>PLN00181 protein SPA1-RELATED; Provisional
Probab=100.00 E-value=2.5e-32 Score=252.90 Aligned_cols=261 Identities=20% Similarity=0.225 Sum_probs=203.0
Q ss_pred CCcEEEEcCCcce-------ecccCCCCCeeEEEEe--CCEEEEEeCCCeEEEEeecCCCccccccCCccccceeeeecc
Q 047325 63 SKNIRVWKNLKEF-------CGFKASSGLVKAIVIS--GEKIFTGHQDGKIRVWKISPKNQSVHKRAGTLPTLKDIFKSS 133 (368)
Q Consensus 63 dg~i~iw~~~~~~-------~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (368)
+|.+++|+..... ..+..|...|.+++|+ ++++++|+.|+.|++|++.......... ..
T Consensus 457 ~gl~~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~--~~---------- 524 (793)
T PLN00181 457 EGLCKYLSFSKLRVKADLKQGDLLNSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDI--HY---------- 524 (793)
T ss_pred hhhhhhhcccceEEEEeeccccccCCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCccccccccc--cc----------
Confidence 6778888765321 2245689999999998 7899999999999999976421100000 00
Q ss_pred CCCCceeEecccceeeeeecCCCEeEEEEcC-CCCEEEEEeCCCcEEEEEccCCeEEEEeecCCCceEEEEeCC-CC-eE
Q 047325 134 IKPSNYIEVRRHRTALWIRHSDAVSCMSLDQ-DCGLLYTASWDRTFKVWRISDSKCLESVSAHDDAVNSVVSSS-EG-LI 210 (368)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~-~~-~l 210 (368)
... ...+...|.+++|++ ++.+|++++.||.|++||+.+++.+..+.+|...|.+++|+| ++ +|
T Consensus 525 ------------~~~-~~~~~~~v~~l~~~~~~~~~las~~~Dg~v~lWd~~~~~~~~~~~~H~~~V~~l~~~p~~~~~L 591 (793)
T PLN00181 525 ------------PVV-ELASRSKLSGICWNSYIKSQVASSNFEGVVQVWDVARSQLVTEMKEHEKRVWSIDYSSADPTLL 591 (793)
T ss_pred ------------ceE-EecccCceeeEEeccCCCCEEEEEeCCCeEEEEECCCCeEEEEecCCCCCEEEEEEcCCCCCEE
Confidence 000 011456789999987 478999999999999999999999999999999999999997 55 89
Q ss_pred EEEcCCCeEEEEEcCCCCCCcccccceeeccccccEEEEEEc-CCCCEEEEecCCCcEEEEeCCCccccceeeeccceEE
Q 047325 211 FTGSADGTVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVS-SSRSIVYCGSSDGLVNFWEREKQLSHGGVLKGHKLAV 289 (368)
Q Consensus 211 ~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~ 289 (368)
++|+.|+.|++||++... ....+. +...+.++.|+ +++++|++|+.||.|++||+++.........+|...+
T Consensus 592 ~Sgs~Dg~v~iWd~~~~~------~~~~~~-~~~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~~~~~~~~~h~~~V 664 (793)
T PLN00181 592 ASGSDDGSVKLWSINQGV------SIGTIK-TKANICCVQFPSESGRSLAFGSADHKVYYYDLRNPKLPLCTMIGHSKTV 664 (793)
T ss_pred EEEcCCCEEEEEECCCCc------EEEEEe-cCCCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCCccceEecCCCCCE
Confidence 999999999999998652 233333 33578899995 5799999999999999999987655555677898888
Q ss_pred EEEEe-CCCEEEEeeCCCeEEEEecCCC----ceeeeEeeeccccCeeEEEEecCCeeeecCCcceEEEEEeeCCccccc
Q 047325 290 LCLAA-AGKLVFSGSADKTICVWRRDGA----IHTCLSVLTGHTGPVKCLAVEEDRDSSSSTSSCAQRWIVYSGSLDKSD 364 (368)
Q Consensus 290 ~~~~~-~~~~l~~~~~dg~i~iw~~~~~----~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~w~l~sg~~D~~v 364 (368)
.++.+ ++.+|++++.|++|++||+... ...++..+.+|...++.++|+|++. +|++|+.|+.|
T Consensus 665 ~~v~f~~~~~lvs~s~D~~ikiWd~~~~~~~~~~~~l~~~~gh~~~i~~v~~s~~~~------------~lasgs~D~~v 732 (793)
T PLN00181 665 SYVRFVDSSTLVSSSTDNTLKLWDLSMSISGINETPLHSFMGHTNVKNFVGLSVSDG------------YIATGSETNEV 732 (793)
T ss_pred EEEEEeCCCEEEEEECCCEEEEEeCCCCccccCCcceEEEcCCCCCeeEEEEcCCCC------------EEEEEeCCCEE
Confidence 77765 6889999999999999998643 2356778899999999999999999 45566666666
Q ss_pred ccC
Q 047325 365 DDV 367 (368)
Q Consensus 365 ~i~ 367 (368)
++|
T Consensus 733 ~iw 735 (793)
T PLN00181 733 FVY 735 (793)
T ss_pred EEE
Confidence 655
No 62
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=100.00 E-value=1.2e-32 Score=229.40 Aligned_cols=274 Identities=27% Similarity=0.441 Sum_probs=230.4
Q ss_pred cCCCceeeeccCcCCcEEEEEecCC-EEEEccCCCcEEEEcCC-cc---eecccCCCCCeeE-EEEe---CCEEEEEeCC
Q 047325 31 LPQNGLIGSLVREEGHIYSLAASKD-LLYTGSDSKNIRVWKNL-KE---FCGFKASSGLVKA-IVIS---GEKIFTGHQD 101 (368)
Q Consensus 31 ~~~~~~~~~~~~h~~~i~~~~~~~~-~l~s~~~dg~i~iw~~~-~~---~~~~~~~~~~v~~-~~~~---~~~l~s~~~d 101 (368)
++..++-+.+.+|...|..++...+ .++++|.||++++|+-. ++ ...+.+|.+.|.. +++. +..+++|+.|
T Consensus 1 ~~~Y~ls~~l~gH~~DVr~v~~~~~~~i~s~sRd~t~~vw~~~~~~~l~~~~~~~~~g~i~~~i~y~e~~~~~l~~g~~D 80 (745)
T KOG0301|consen 1 MPQYKLSHELEGHKSDVRAVAVTDGVCIISGSRDGTVKVWAKKGKQYLETHAFEGPKGFIANSICYAESDKGRLVVGGMD 80 (745)
T ss_pred CCcceeEEEeccCccchheeEecCCeEEeecCCCCceeeeeccCcccccceecccCcceeeccceeccccCcceEeeccc
Confidence 3566778899999999999988755 79999999999999864 22 3346777777776 7765 4579999999
Q ss_pred CeEEEEeecCCCccccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcCCCCEEEEEeCCCcEEEE
Q 047325 102 GKIRVWKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCGLLYTASWDRTFKVW 181 (368)
Q Consensus 102 g~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iw 181 (368)
++|.+|.+.+..+.. .+.||...|.++....++. +++|+.|.++++|
T Consensus 81 ~~i~v~~~~~~~P~~--------------------------------~LkgH~snVC~ls~~~~~~-~iSgSWD~TakvW 127 (745)
T KOG0301|consen 81 TTIIVFKLSQAEPLY--------------------------------TLKGHKSNVCSLSIGEDGT-LISGSWDSTAKVW 127 (745)
T ss_pred ceEEEEecCCCCchh--------------------------------hhhccccceeeeecCCcCc-eEecccccceEEe
Confidence 999999998776433 3456999999999888876 9999999999999
Q ss_pred EccCCeEEEEeecCCCceEEEEeCCCCeEEEEcCCCeEEEEEcCCCCCCcccccceeeccccccEEEEEEcCCCCEEEEe
Q 047325 182 RISDSKCLESVSAHDDAVNSVVSSSEGLIFTGSADGTVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSSSRSIVYCG 261 (368)
Q Consensus 182 d~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~ 261 (368)
-. +++...+++|...|.+++.-|++.+++|+.|..|++|.-. ..++.+.+|...|+.+++-+++ .++++
T Consensus 128 ~~--~~l~~~l~gH~asVWAv~~l~e~~~vTgsaDKtIklWk~~--------~~l~tf~gHtD~VRgL~vl~~~-~flSc 196 (745)
T KOG0301|consen 128 RI--GELVYSLQGHTASVWAVASLPENTYVTGSADKTIKLWKGG--------TLLKTFSGHTDCVRGLAVLDDS-HFLSC 196 (745)
T ss_pred cc--hhhhcccCCcchheeeeeecCCCcEEeccCcceeeeccCC--------chhhhhccchhheeeeEEecCC-CeEee
Confidence 75 5677779999999999999999999999999999999874 3688899999999999999764 57889
Q ss_pred cCCCcEEEEeCCCccccceeeeccceEEEEEE--eCCCEEEEeeCCCeEEEEecCCCceeeeEeeeccccCeeEEEEecC
Q 047325 262 SSDGLVNFWEREKQLSHGGVLKGHKLAVLCLA--AAGKLVFSGSADKTICVWRRDGAIHTCLSVLTGHTGPVKCLAVEED 339 (368)
Q Consensus 262 ~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~l~~~~~ 339 (368)
+.||.|++|++.. ..+ ....+|...+++++ .++..++++++|++++||+.+ .+.+.+.-....|+++.+-++
T Consensus 197 sNDg~Ir~w~~~g-e~l-~~~~ghtn~vYsis~~~~~~~Ivs~gEDrtlriW~~~----e~~q~I~lPttsiWsa~~L~N 270 (745)
T KOG0301|consen 197 SNDGSIRLWDLDG-EVL-LEMHGHTNFVYSISMALSDGLIVSTGEDRTLRIWKKD----ECVQVITLPTTSIWSAKVLLN 270 (745)
T ss_pred cCCceEEEEeccC-cee-eeeeccceEEEEEEecCCCCeEEEecCCceEEEeecC----ceEEEEecCccceEEEEEeeC
Confidence 9999999999954 443 57789999998887 478899999999999999765 566666655568999999999
Q ss_pred CeeeecCCcceEEEEEeeCCcccccccC
Q 047325 340 RDSSSSTSSCAQRWIVYSGSLDKSDDDV 367 (368)
Q Consensus 340 ~~~~~~~~~~~~~w~l~sg~~D~~v~i~ 367 (368)
|. +++|+.||.||||
T Consensus 271 gD-------------Ivvg~SDG~VrVf 285 (745)
T KOG0301|consen 271 GD-------------IVVGGSDGRVRVF 285 (745)
T ss_pred CC-------------EEEeccCceEEEE
Confidence 97 7788888888887
No 63
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=1.6e-32 Score=236.99 Aligned_cols=239 Identities=25% Similarity=0.448 Sum_probs=199.3
Q ss_pred CCCCCeeEEEEe--CCEEEEEeCCCeEEEEeecCCCccccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCE
Q 047325 80 ASSGLVKAIVIS--GEKIFTGHQDGKIRVWKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAV 157 (368)
Q Consensus 80 ~~~~~v~~~~~~--~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 157 (368)
.+...|.++.|+ |+.+++++.|+.+++|+........ ...+.+|...|
T Consensus 157 ~~~~sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~~~------------------------------~~~l~~h~~~v 206 (456)
T KOG0266|consen 157 HECPSVTCVDFSPDGRALAAASSDGLIRIWKLEGIKSNL------------------------------LRELSGHTRGV 206 (456)
T ss_pred cccCceEEEEEcCCCCeEEEccCCCcEEEeecccccchh------------------------------hccccccccce
Confidence 347789999988 8899999999999999996554200 11123499999
Q ss_pred eEEEEcCCCCEEEEEeCCCcEEEEEc-cCCeEEEEeecCCCceEEEEeCCCC-eEEEEcCCCeEEEEEcCCCCCCccccc
Q 047325 158 SCMSLDQDCGLLYTASWDRTFKVWRI-SDSKCLESVSAHDDAVNSVVSSSEG-LIFTGSADGTVKVWKREQHGKGTKHSL 235 (368)
Q Consensus 158 ~~~~~~~~~~~l~~~~~d~~i~iwd~-~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~ 235 (368)
.+++|+|+++++++++.|++|++||+ ..+..++++++|...|++++|+|++ .+++|+.|++|++||++.+ .+
T Consensus 207 ~~~~fs~d~~~l~s~s~D~tiriwd~~~~~~~~~~l~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~------~~ 280 (456)
T KOG0266|consen 207 SDVAFSPDGSYLLSGSDDKTLRIWDLKDDGRNLKTLKGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTG------EC 280 (456)
T ss_pred eeeEECCCCcEEEEecCCceEEEeeccCCCeEEEEecCCCCceEEEEecCCCCEEEEecCCCcEEEEeccCC------eE
Confidence 99999999999999999999999999 5568999999999999999999999 9999999999999999975 47
Q ss_pred ceeeccccccEEEEEEcCCCCEEEEecCCCcEEEEeCCCcccc-ceeeeccc----eEEEEEEeCCCEEEEeeCCCeEEE
Q 047325 236 AQTLLKQECAVTALVVSSSRSIVYCGSSDGLVNFWEREKQLSH-GGVLKGHK----LAVLCLAAAGKLVFSGSADKTICV 310 (368)
Q Consensus 236 ~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~-~~~~~~~~----~~~~~~~~~~~~l~~~~~dg~i~i 310 (368)
...+..|...|++++|++++++|++++.|+.|++||+.++... ...+..+. .....++|++.+++++..|+.+++
T Consensus 281 ~~~l~~hs~~is~~~f~~d~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d~~~~~ 360 (456)
T KOG0266|consen 281 VRKLKGHSDGISGLAFSPDGNLLVSASYDGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSASLDRTLKL 360 (456)
T ss_pred EEeeeccCCceEEEEECCCCCEEEEcCCCccEEEEECCCCceeeeecccCCCCCCceeEEEECCCCcEEEEecCCCeEEE
Confidence 8899999999999999999999999999999999999987731 22333322 344677789999999999999999
Q ss_pred EecCCCceeeeEeeeccccC---eeEEEEecCCeeeecCCcceEEEEEeeCCcccccccCC
Q 047325 311 WRRDGAIHTCLSVLTGHTGP---VKCLAVEEDRDSSSSTSSCAQRWIVYSGSLDKSDDDVH 368 (368)
Q Consensus 311 w~~~~~~~~~~~~~~~h~~~---v~~l~~~~~~~~~~~~~~~~~~w~l~sg~~D~~v~i~h 368 (368)
||+... ..+..+.+|... +.+...++.+. .+++|+.|+.|++|+
T Consensus 361 w~l~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~------------~i~sg~~d~~v~~~~ 407 (456)
T KOG0266|consen 361 WDLRSG--KSVGTYTGHSNLVRCIFSPTLSTGGK------------LIYSGSEDGSVYVWD 407 (456)
T ss_pred EEccCC--cceeeecccCCcceeEecccccCCCC------------eEEEEeCCceEEEEe
Confidence 999876 677788888875 34445567777 577888888888774
No 64
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=5.5e-32 Score=216.80 Aligned_cols=258 Identities=21% Similarity=0.337 Sum_probs=209.7
Q ss_pred cCCcEEEEEecC----CEEEEccCCCcEEEEcCCc--ceecccCCCCCeeEEEEe--CCEEEEEeCCCeEEEEeecCCCc
Q 047325 43 EEGHIYSLAASK----DLLYTGSDSKNIRVWKNLK--EFCGFKASSGLVKAIVIS--GEKIFTGHQDGKIRVWKISPKNQ 114 (368)
Q Consensus 43 h~~~i~~~~~~~----~~l~s~~~dg~i~iw~~~~--~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~vw~~~~~~~ 114 (368)
..+.|.+++|+| ++.+|+|. .+.||+... ....+......|.++.|. |..|++|...|.|+|+|..+...
T Consensus 25 e~~~vssl~fsp~~P~d~aVt~S~--rvqly~~~~~~~~k~~srFk~~v~s~~fR~DG~LlaaGD~sG~V~vfD~k~r~i 102 (487)
T KOG0310|consen 25 EHNSVSSLCFSPKHPYDFAVTSSV--RVQLYSSVTRSVRKTFSRFKDVVYSVDFRSDGRLLAAGDESGHVKVFDMKSRVI 102 (487)
T ss_pred ccCcceeEecCCCCCCceEEeccc--EEEEEecchhhhhhhHHhhccceeEEEeecCCeEEEccCCcCcEEEeccccHHH
Confidence 357899999987 36656554 688888653 344566677889999997 89999999999999999554222
Q ss_pred cccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcCC-CCEEEEEeCCCcEEEEEccCCeEEEEee
Q 047325 115 SVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQD-CGLLYTASWDRTFKVWRISDSKCLESVS 193 (368)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~d~~i~iwd~~~~~~~~~~~ 193 (368)
.. .+.+|..+|..+.|+|+ +..+++|+.|+.+++||+.+......+.
T Consensus 103 LR--------------------------------~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v~~~l~ 150 (487)
T KOG0310|consen 103 LR--------------------------------QLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYVQAELS 150 (487)
T ss_pred HH--------------------------------HHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcEEEEEec
Confidence 11 23349999999999995 5577888889999999999988877899
Q ss_pred cCCCceEEEEeCCCC--eEEEEcCCCeEEEEEcCCCCCCcccccceeeccccccEEEEEEcCCCCEEEEecCCCcEEEEe
Q 047325 194 AHDDAVNSVVSSSEG--LIFTGSADGTVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSSSRSIVYCGSSDGLVNFWE 271 (368)
Q Consensus 194 ~~~~~v~~~~~~~~~--~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d 271 (368)
+|+..|.|.+++|.. .+++|+.||.|++||++... .......|..+|..+.+-|.|..+++++. ..|++||
T Consensus 151 ~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~------~~v~elnhg~pVe~vl~lpsgs~iasAgG-n~vkVWD 223 (487)
T KOG0310|consen 151 GHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLT------SRVVELNHGCPVESVLALPSGSLIASAGG-NSVKVWD 223 (487)
T ss_pred CCcceeEeeccccCCCeEEEecCCCceEEEEEeccCC------ceeEEecCCCceeeEEEcCCCCEEEEcCC-CeEEEEE
Confidence 999999999999976 89999999999999999753 23344578999999999999999999875 5799999
Q ss_pred CCCccccceeeeccceEEEEEEe--CCCEEEEeeCCCeEEEEecCCCceeeeEeeeccccCeeEEEEecCCeeee
Q 047325 272 REKQLSHGGVLKGHKLAVLCLAA--AGKLVFSGSADKTICVWRRDGAIHTCLSVLTGHTGPVKCLAVEEDRDSSS 344 (368)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~ 344 (368)
+-++.........|...|+|+.. ++..|++|+-|+.|++||+.+. +.+..+. ..+||.+++.+|+++.++
T Consensus 224 l~~G~qll~~~~~H~KtVTcL~l~s~~~rLlS~sLD~~VKVfd~t~~--Kvv~s~~-~~~pvLsiavs~dd~t~v 295 (487)
T KOG0310|consen 224 LTTGGQLLTSMFNHNKTVTCLRLASDSTRLLSGSLDRHVKVFDTTNY--KVVHSWK-YPGPVLSIAVSPDDQTVV 295 (487)
T ss_pred ecCCceehhhhhcccceEEEEEeecCCceEeecccccceEEEEccce--EEEEeee-cccceeeEEecCCCceEE
Confidence 99766665666668888888776 6799999999999999986554 6666664 678999999999999433
No 65
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=100.00 E-value=1.3e-33 Score=207.65 Aligned_cols=251 Identities=21% Similarity=0.337 Sum_probs=211.7
Q ss_pred cccccCCCceeeeccCcCCcEEEEEecCC--EEEEccCCCcEEEEcCCccee-cccCCCCCeeEEEEe--CCEEEEEeCC
Q 047325 27 FEENLPQNGLIGSLVREEGHIYSLAASKD--LLYTGSDSKNIRVWKNLKEFC-GFKASSGLVKAIVIS--GEKIFTGHQD 101 (368)
Q Consensus 27 ~~~~~~~~~~~~~~~~h~~~i~~~~~~~~--~l~s~~~dg~i~iw~~~~~~~-~~~~~~~~v~~~~~~--~~~l~s~~~d 101 (368)
...+=..+..+.+|.||+++|++...+.+ ..|+++.|-+-++||..+.-. .-..|..-|.+++|+ .++|++|+.+
T Consensus 42 mlr~g~tgdwigtfeghkgavw~~~l~~na~~aasaaadftakvw~a~tgdelhsf~hkhivk~~af~~ds~~lltgg~e 121 (334)
T KOG0278|consen 42 MLRNGDTGDWIGTFEGHKGAVWSATLNKNATRAASAAADFTAKVWDAVTGDELHSFEHKHIVKAVAFSQDSNYLLTGGQE 121 (334)
T ss_pred hhccCCCCCcEEeeeccCcceeeeecCchhhhhhhhcccchhhhhhhhhhhhhhhhhhhheeeeEEecccchhhhccchH
Confidence 33444567889999999999999999877 788999999999999765422 233578889999998 7799999999
Q ss_pred CeEEEEeecCCCccccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcCCCCEEEEEeCCCcEEEE
Q 047325 102 GKIRVWKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCGLLYTASWDRTFKVW 181 (368)
Q Consensus 102 g~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iw 181 (368)
..+||+|++..+.... .+.+|.+.|..+.|....+.|+++..|++|++|
T Consensus 122 kllrvfdln~p~App~-------------------------------E~~ghtg~Ir~v~wc~eD~~iLSSadd~tVRLW 170 (334)
T KOG0278|consen 122 KLLRVFDLNRPKAPPK-------------------------------EISGHTGGIRTVLWCHEDKCILSSADDKTVRLW 170 (334)
T ss_pred HHhhhhhccCCCCCch-------------------------------hhcCCCCcceeEEEeccCceEEeeccCCceEEE
Confidence 9999999987764322 233499999999999988999999999999999
Q ss_pred EccCCeEEEEeecCCCceEEEEeCCCCeEEEEcCCCeEEEEEcCCCCCCcccccceeeccccccEEEEEEcCCCCEEEEe
Q 047325 182 RISDSKCLESVSAHDDAVNSVVSSSEGLIFTGSADGTVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSSSRSIVYCG 261 (368)
Q Consensus 182 d~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~ 261 (368)
|.+++..++++. .+.+|+++..+++|.+++....+.|.+||....+. ++. ......|.+...+|+...+++|
T Consensus 171 D~rTgt~v~sL~-~~s~VtSlEvs~dG~ilTia~gssV~Fwdaksf~~------lKs-~k~P~nV~SASL~P~k~~fVaG 242 (334)
T KOG0278|consen 171 DHRTGTEVQSLE-FNSPVTSLEVSQDGRILTIAYGSSVKFWDAKSFGL------LKS-YKMPCNVESASLHPKKEFFVAG 242 (334)
T ss_pred EeccCcEEEEEe-cCCCCcceeeccCCCEEEEecCceeEEeccccccc------eee-ccCccccccccccCCCceEEec
Confidence 999999999997 56789999999999888888899999999986532 222 2345668999999999999999
Q ss_pred cCCCcEEEEeCCCccccceeeeccceEEEE--EEeCCCEEEEeeCCCeEEEEecCCC
Q 047325 262 SSDGLVNFWEREKQLSHGGVLKGHKLAVLC--LAAAGKLVFSGSADKTICVWRRDGA 316 (368)
Q Consensus 262 ~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~~~~~dg~i~iw~~~~~ 316 (368)
++|..++.||..++..+....++|.++|.| |+|+|...++|++||+|++|.....
T Consensus 243 ged~~~~kfDy~TgeEi~~~nkgh~gpVhcVrFSPdGE~yAsGSEDGTirlWQt~~~ 299 (334)
T KOG0278|consen 243 GEDFKVYKFDYNTGEEIGSYNKGHFGPVHCVRFSPDGELYASGSEDGTIRLWQTTPG 299 (334)
T ss_pred CcceEEEEEeccCCceeeecccCCCCceEEEEECCCCceeeccCCCceEEEEEecCC
Confidence 999999999999998886666889988865 5579999999999999999977544
No 66
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=100.00 E-value=3e-32 Score=238.14 Aligned_cols=296 Identities=20% Similarity=0.267 Sum_probs=222.0
Q ss_pred CCcEEEEEecCC--EEEEcc--CCCcEEEEcCC--------------cceecccCCCCCeeEEEEe--CCEEEEEeCCCe
Q 047325 44 EGHIYSLAASKD--LLYTGS--DSKNIRVWKNL--------------KEFCGFKASSGLVKAIVIS--GEKIFTGHQDGK 103 (368)
Q Consensus 44 ~~~i~~~~~~~~--~l~s~~--~dg~i~iw~~~--------------~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~ 103 (368)
+..|++++.+++ .++||+ .||.++||+.. +.++....|.+.|+|+.|+ |.+||+|+.|+.
T Consensus 13 ~~~IfSIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~dG~~lAsGSDD~~ 92 (942)
T KOG0973|consen 13 EKSIFSIDVHPDGVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSPDGSYLASGSDDRL 92 (942)
T ss_pred CeeEEEEEecCCceeEecCCccccccceeeccccccchhhhhhcccchhheeeccccCceeEEEECCCCCeEeeccCcce
Confidence 456899998877 999999 99999999742 3355677899999999998 889999999999
Q ss_pred EEEEeecCCCccccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcCCCCEEEEEeCCCcEEEEEc
Q 047325 104 IRVWKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCGLLYTASWDRTFKVWRI 183 (368)
Q Consensus 104 i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~ 183 (368)
|.||+........ ..+. .....-...-.....+.+|...|..++|+|++.+|++++.|++|.+||.
T Consensus 93 v~iW~~~~~~~~~--~fgs------------~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~~lvS~s~DnsViiwn~ 158 (942)
T KOG0973|consen 93 VMIWERAEIGSGT--VFGS------------TGGAKNVESWKVVSILRGHDSDVLDVNWSPDDSLLVSVSLDNSVIIWNA 158 (942)
T ss_pred EEEeeecccCCcc--cccc------------cccccccceeeEEEEEecCCCccceeccCCCccEEEEecccceEEEEcc
Confidence 9999987411000 0000 0000001112234567789999999999999999999999999999999
Q ss_pred cCCeEEEEeecCCCceEEEEeCCCC-eEEEEcCCCeEEEEEcCCCCCCcccccceeeccccccEEEEEEcCCCCEEEEec
Q 047325 184 SDSKCLESVSAHDDAVNSVVSSSEG-LIFTGSADGTVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSSSRSIVYCGS 262 (368)
Q Consensus 184 ~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~ 262 (368)
.+.+.+..+++|...|..+.|.|-| +|++-+.|++|++|++..-+....................+.|+|||++|++..
T Consensus 159 ~tF~~~~vl~~H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWSPDG~~las~n 238 (942)
T KOG0973|consen 159 KTFELLKVLRGHQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWSPDGHHLASPN 238 (942)
T ss_pred ccceeeeeeecccccccceEECCccCeeeeecCCceEEEEEcccceeeEeeccchhhCCCcceeeecccCCCcCeecchh
Confidence 9999999999999999999999999 999999999999999765321110000111112345688999999999999864
Q ss_pred C----CCcEEEEeCCCccccceeeeccceEEEEEEeC-------CC------------EEEEeeCCCeEEEEecCCCcee
Q 047325 263 S----DGLVNFWEREKQLSHGGVLKGHKLAVLCLAAA-------GK------------LVFSGSADKTICVWRRDGAIHT 319 (368)
Q Consensus 263 ~----dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~-------~~------------~l~~~~~dg~i~iw~~~~~~~~ 319 (368)
. -.++.|.+..+.. ....+.+|..++.++.++ .+ .+|+|+.|++|.||..... +
T Consensus 239 A~n~~~~~~~IieR~tWk-~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~~--R 315 (942)
T KOG0973|consen 239 AVNGGKSTIAIIERGTWK-VDKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTALP--R 315 (942)
T ss_pred hccCCcceeEEEecCCce-eeeeeecCCCceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEEEecCCC--C
Confidence 2 3467888765543 335677888877665542 11 6889999999999976443 5
Q ss_pred eeEee-eccccCeeEEEEecCCeeeecCCcceEEEEEeeCCcccccccCC
Q 047325 320 CLSVL-TGHTGPVKCLAVEEDRDSSSSTSSCAQRWIVYSGSLDKSDDDVH 368 (368)
Q Consensus 320 ~~~~~-~~h~~~v~~l~~~~~~~~~~~~~~~~~~w~l~sg~~D~~v~i~h 368 (368)
++... .-....|.+++|+|||. .|+.+|.||+|.++|
T Consensus 316 Pl~vi~~lf~~SI~DmsWspdG~------------~LfacS~DGtV~~i~ 353 (942)
T KOG0973|consen 316 PLFVIHNLFNKSIVDMSWSPDGF------------SLFACSLDGTVALIH 353 (942)
T ss_pred chhhhhhhhcCceeeeeEcCCCC------------eEEEEecCCeEEEEE
Confidence 55443 23467899999999999 788999999998876
No 67
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=100.00 E-value=1.1e-32 Score=222.32 Aligned_cols=292 Identities=15% Similarity=0.223 Sum_probs=216.5
Q ss_pred eeccCcCCcEEEEEecCC--EEEEccCCCcEEEEcCCcce---ec----ccCCCCCeeEEEEe--CCEEEEEeCCCeEEE
Q 047325 38 GSLVREEGHIYSLAASKD--LLYTGSDSKNIRVWKNLKEF---CG----FKASSGLVKAIVIS--GEKIFTGHQDGKIRV 106 (368)
Q Consensus 38 ~~~~~h~~~i~~~~~~~~--~l~s~~~dg~i~iw~~~~~~---~~----~~~~~~~v~~~~~~--~~~l~s~~~dg~i~v 106 (368)
..+.+|+..|.++++++. .|++||.|-+|++||+...- .. .......|.++.|+ ++.|++.+.....++
T Consensus 161 i~l~hgtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~~iLvvsg~aqakl 240 (641)
T KOG0772|consen 161 IQLKHGTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGDQILVVSGSAQAKL 240 (641)
T ss_pred EeccCCceEEEEeeecCCCceeeeccccceEEEEecccccccchhhhccCcccccccceeeecCCCCeEEEEecCcceeE
Confidence 457889999999999755 99999999999999976321 11 12345578888888 888888888889999
Q ss_pred EeecCCCccccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcCC-CCEEEEEeCCCcEEEEEccC
Q 047325 107 WKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQD-CGLLYTASWDRTFKVWRISD 185 (368)
Q Consensus 107 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~d~~i~iwd~~~ 185 (368)
+|-+..+.....+... .........||...++|.+|+|. ...|++++.||+++|||+..
T Consensus 241 ~DRdG~~~~e~~KGDQ--------------------YI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~ 300 (641)
T KOG0772|consen 241 LDRDGFEIVEFSKGDQ--------------------YIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNN 300 (641)
T ss_pred EccCCceeeeeeccch--------------------hhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCC
Confidence 9976554322221110 00112234569999999999995 45899999999999999976
Q ss_pred Ce-EEEEee-----cCCCceEEEEeCCCC-eEEEEcCCCeEEEEEcCCCCCCcccccceeeccccc--cEEEEEEcCCCC
Q 047325 186 SK-CLESVS-----AHDDAVNSVVSSSEG-LIFTGSADGTVKVWKREQHGKGTKHSLAQTLLKQEC--AVTALVVSSSRS 256 (368)
Q Consensus 186 ~~-~~~~~~-----~~~~~v~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~--~i~~~~~~~~~~ 256 (368)
.+ .+..++ +..-+++.++|++++ .+++|+.||.|.+|+...... .........|.. .|+|+.|+++|+
T Consensus 301 ~k~q~qVik~k~~~g~Rv~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v---~p~~~vk~AH~~g~~Itsi~FS~dg~ 377 (641)
T KOG0772|consen 301 TKSQLQVIKTKPAGGKRVPVTSCAWNRDGKLIAAGCLDGSIQIWDKGSRTV---RPVMKVKDAHLPGQDITSISFSYDGN 377 (641)
T ss_pred chhheeEEeeccCCCcccCceeeecCCCcchhhhcccCCceeeeecCCccc---ccceEeeeccCCCCceeEEEeccccc
Confidence 43 333333 234568899999999 999999999999999864422 222333445655 899999999999
Q ss_pred EEEEecCCCcEEEEeCCCccccceeee----ccceEEEEEEeCCCEEEEeeC------CCeEEEEecCCCceeeeEeeec
Q 047325 257 IVYCGSSDGLVNFWEREKQLSHGGVLK----GHKLAVLCLAAAGKLVFSGSA------DKTICVWRRDGAIHTCLSVLTG 326 (368)
Q Consensus 257 ~l~~~~~dg~i~i~d~~~~~~~~~~~~----~~~~~~~~~~~~~~~l~~~~~------dg~i~iw~~~~~~~~~~~~~~~ 326 (368)
+|++-+.|+++++||++..+.+..... .....-.||+|+.++|++|.. .|.+.+||..+. ..++.+.-
T Consensus 378 ~LlSRg~D~tLKvWDLrq~kkpL~~~tgL~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~--d~v~ki~i 455 (641)
T KOG0772|consen 378 YLLSRGFDDTLKVWDLRQFKKPLNVRTGLPTPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTL--DTVYKIDI 455 (641)
T ss_pred hhhhccCCCceeeeeccccccchhhhcCCCccCCCCccccCCCceEEEecccccCCCCCceEEEEeccce--eeEEEecC
Confidence 999999999999999998766544433 234455899999999999864 578999976654 66777766
Q ss_pred cccCeeEEEEecCCeeeecCCcceEEEEEeeCCccccccc
Q 047325 327 HTGPVKCLAVEEDRDSSSSTSSCAQRWIVYSGSLDKSDDD 366 (368)
Q Consensus 327 h~~~v~~l~~~~~~~~~~~~~~~~~~w~l~sg~~D~~v~i 366 (368)
....|..+.|+|.-+ +++.|+.||++++
T Consensus 456 ~~aSvv~~~WhpkLN------------Qi~~gsgdG~~~v 483 (641)
T KOG0772|consen 456 STASVVRCLWHPKLN------------QIFAGSGDGTAHV 483 (641)
T ss_pred CCceEEEEeecchhh------------heeeecCCCceEE
Confidence 778899999999877 4455555555554
No 68
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=100.00 E-value=3.2e-32 Score=234.32 Aligned_cols=253 Identities=28% Similarity=0.459 Sum_probs=215.9
Q ss_pred cccCCCceeee-ccCcCCcEEEEEec--CCEEEEccCCCcEEEEcCCcc--eecccCCCCCeeEEEEeCCEEEEEeCCCe
Q 047325 29 ENLPQNGLIGS-LVREEGHIYSLAAS--KDLLYTGSDSKNIRVWKNLKE--FCGFKASSGLVKAIVISGEKIFTGHQDGK 103 (368)
Q Consensus 29 ~~~~~~~~~~~-~~~h~~~i~~~~~~--~~~l~s~~~dg~i~iw~~~~~--~~~~~~~~~~v~~~~~~~~~l~s~~~dg~ 103 (368)
-+..+...+.+ +.||.+.|.++++. +++|++|+.|.++++||..+. ...+.+|...|.++...+.++++|+.|.+
T Consensus 233 ~~~~~~~~i~~~l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~sg~C~~~l~gh~stv~~~~~~~~~~~sgs~D~t 312 (537)
T KOG0274|consen 233 WDLNNGYLILTRLVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCSTGECTHSLQGHTSSVRCLTIDPFLLVSGSRDNT 312 (537)
T ss_pred eecccceEEEeeccCCCCCceeEEEecCCCEEEEEecCCcEEeEecCCCcEEEEecCCCceEEEEEccCceEeeccCCce
Confidence 33445556666 99999999999998 789999999999999998754 55788999999999999999999999999
Q ss_pred EEEEeecCCCccccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcCCCCEEEEEeCCCcEEEEEc
Q 047325 104 IRVWKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCGLLYTASWDRTFKVWRI 183 (368)
Q Consensus 104 i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~ 183 (368)
|++|+++++... .++.+|..+|+++..+ +.++++|+.|+.|++||+
T Consensus 313 VkVW~v~n~~~l--------------------------------~l~~~h~~~V~~v~~~--~~~lvsgs~d~~v~VW~~ 358 (537)
T KOG0274|consen 313 VKVWDVTNGACL--------------------------------NLLRGHTGPVNCVQLD--EPLLVSGSYDGTVKVWDP 358 (537)
T ss_pred EEEEeccCcceE--------------------------------EEeccccccEEEEEec--CCEEEEEecCceEEEEEh
Confidence 999999977632 3344599999999998 779999999999999999
Q ss_pred cCCeEEEEeecCCCceEEEEeCCCCeEEEEcCCCeEEEEEcCCCCCCcccccceeeccccccEEEEEEcCCCCEEEEecC
Q 047325 184 SDSKCLESVSAHDDAVNSVVSSSEGLIFTGSADGTVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSSSRSIVYCGSS 263 (368)
Q Consensus 184 ~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~ 263 (368)
.+++++..+.+|...|.++.+.+...+++|+.|+.|++||++... .+...+.+|..-+..+.+ .+++|++++.
T Consensus 359 ~~~~cl~sl~gH~~~V~sl~~~~~~~~~Sgs~D~~IkvWdl~~~~-----~c~~tl~~h~~~v~~l~~--~~~~Lvs~~a 431 (537)
T KOG0274|consen 359 RTGKCLKSLSGHTGRVYSLIVDSENRLLSGSLDTTIKVWDLRTKR-----KCIHTLQGHTSLVSSLLL--RDNFLVSSSA 431 (537)
T ss_pred hhceeeeeecCCcceEEEEEecCcceEEeeeeccceEeecCCchh-----hhhhhhcCCccccccccc--ccceeEeccc
Confidence 999999999999999999988776799999999999999998652 467788888888866655 5789999999
Q ss_pred CCcEEEEeCCCccccceeeeccceEEEEEEeCCCEEEEeeCCCeEEEEecCCCceeeeEee
Q 047325 264 DGLVNFWEREKQLSHGGVLKGHKLAVLCLAAAGKLVFSGSADKTICVWRRDGAIHTCLSVL 324 (368)
Q Consensus 264 dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~ 324 (368)
|+.|++||..++.........|...+.++......+++++.||++++||+++. .+...+
T Consensus 432 D~~Ik~WD~~~~~~~~~~~~~~~~~v~~l~~~~~~il~s~~~~~~~l~dl~~~--~~~~~l 490 (537)
T KOG0274|consen 432 DGTIKLWDAEEGECLRTLEGRHVGGVSALALGKEEILCSSDDGSVKLWDLRSG--TLIRTL 490 (537)
T ss_pred cccEEEeecccCceeeeeccCCcccEEEeecCcceEEEEecCCeeEEEecccC--chhhhh
Confidence 99999999998877643333367888888887788999999999999999876 444444
No 69
>PTZ00421 coronin; Provisional
Probab=100.00 E-value=4.8e-31 Score=226.80 Aligned_cols=272 Identities=16% Similarity=0.232 Sum_probs=196.1
Q ss_pred EecCCEEEEccCCCcEEEEcCCcc---------------eecccCCCCCeeEEEEe---CCEEEEEeCCCeEEEEeecCC
Q 047325 51 AASKDLLYTGSDSKNIRVWKNLKE---------------FCGFKASSGLVKAIVIS---GEKIFTGHQDGKIRVWKISPK 112 (368)
Q Consensus 51 ~~~~~~l~s~~~dg~i~iw~~~~~---------------~~~~~~~~~~v~~~~~~---~~~l~s~~~dg~i~vw~~~~~ 112 (368)
++++..+++++.+.....|+.... ...+.+|.+.|.+++|+ +++|++|+.||+|++||+.++
T Consensus 29 ~~d~~~~~~~n~~~~a~~w~~~gg~~v~~~~~~G~~~~~~~~l~GH~~~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~ 108 (493)
T PTZ00421 29 LWDCSNTIACNDRFIAVPWQQLGSTAVLKHTDYGKLASNPPILLGQEGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEE 108 (493)
T ss_pred cCCCCCcEeECCceEEEEEecCCceEEeeccccccCCCCCceEeCCCCCEEEEEEcCCCCCEEEEEeCCCEEEEEecCCC
Confidence 344445555555555556653211 12367899999999997 468999999999999999765
Q ss_pred CccccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcCCC-CEEEEEeCCCcEEEEEccCCeEEEE
Q 047325 113 NQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDC-GLLYTASWDRTFKVWRISDSKCLES 191 (368)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~iwd~~~~~~~~~ 191 (368)
...... ......+.+|...|.+++|+|++ ++|++++.|+.|++||+.+++.+..
T Consensus 109 ~~~~~~-------------------------~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~~~~~ 163 (493)
T PTZ00421 109 GLTQNI-------------------------SDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGKAVEV 163 (493)
T ss_pred cccccc-------------------------CcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCCeEEEE
Confidence 321100 01223456699999999999975 6999999999999999999999999
Q ss_pred eecCCCceEEEEeCCCC-eEEEEcCCCeEEEEEcCCCCCCcccccceeecccccc-EEEEEEcCCCCEEEEec----CCC
Q 047325 192 VSAHDDAVNSVVSSSEG-LIFTGSADGTVKVWKREQHGKGTKHSLAQTLLKQECA-VTALVVSSSRSIVYCGS----SDG 265 (368)
Q Consensus 192 ~~~~~~~v~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~-i~~~~~~~~~~~l~~~~----~dg 265 (368)
+..|...|.+++|+|++ +|++++.|+.|++||++.+. ....+..|.+. ...+.|.+++..+++++ .|+
T Consensus 164 l~~h~~~V~sla~spdG~lLatgs~Dg~IrIwD~rsg~------~v~tl~~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr 237 (493)
T PTZ00421 164 IKCHSDQITSLEWNLDGSLLCTTSKDKKLNIIDPRDGT------IVSSVEAHASAKSQRCLWAKRKDLIITLGCSKSQQR 237 (493)
T ss_pred EcCCCCceEEEEEECCCCEEEEecCCCEEEEEECCCCc------EEEEEecCCCCcceEEEEcCCCCeEEEEecCCCCCC
Confidence 99999999999999999 99999999999999998752 34555666654 45677888877777654 478
Q ss_pred cEEEEeCCCccccceeeeccc---eEEEEEEeCCCEEEEee-CCCeEEEEecCCCceeeeEeee-ccccCeeEEEEecCC
Q 047325 266 LVNFWEREKQLSHGGVLKGHK---LAVLCLAAAGKLVFSGS-ADKTICVWRRDGAIHTCLSVLT-GHTGPVKCLAVEEDR 340 (368)
Q Consensus 266 ~i~i~d~~~~~~~~~~~~~~~---~~~~~~~~~~~~l~~~~-~dg~i~iw~~~~~~~~~~~~~~-~h~~~v~~l~~~~~~ 340 (368)
.|++||+++...+......+. .....+++++++|++|+ .|+.|++||+.... ...... .+..++..++|.|..
T Consensus 238 ~VklWDlr~~~~p~~~~~~d~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~~--~~~~~~~~s~~~~~g~~~~pk~ 315 (493)
T PTZ00421 238 QIMLWDTRKMASPYSTVDLDQSSALFIPFFDEDTNLLYIGSKGEGNIRCFELMNER--LTFCSSYSSVEPHKGLCMMPKW 315 (493)
T ss_pred eEEEEeCCCCCCceeEeccCCCCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCCc--eEEEeeccCCCCCcceEecccc
Confidence 999999987554433332222 22244667899998887 59999999998763 333332 356678899999875
Q ss_pred eeeecCCcceEEEEE
Q 047325 341 DSSSSTSSCAQRWIV 355 (368)
Q Consensus 341 ~~~~~~~~~~~~w~l 355 (368)
..=.....-.+++.|
T Consensus 316 ~~dv~~~Ei~r~~~l 330 (493)
T PTZ00421 316 SLDTRKCEIARFYAL 330 (493)
T ss_pred cccccceeeeEEEEe
Confidence 532323333444443
No 70
>PTZ00420 coronin; Provisional
Probab=100.00 E-value=1.2e-30 Score=225.39 Aligned_cols=251 Identities=12% Similarity=0.212 Sum_probs=188.7
Q ss_pred EccCCCcEEEEcCCc--ceecccCCCCCeeEEEEe---CCEEEEEeCCCeEEEEeecCCCccccccCCccccceeeeecc
Q 047325 59 TGSDSKNIRVWKNLK--EFCGFKASSGLVKAIVIS---GEKIFTGHQDGKIRVWKISPKNQSVHKRAGTLPTLKDIFKSS 133 (368)
Q Consensus 59 s~~~dg~i~iw~~~~--~~~~~~~~~~~v~~~~~~---~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (368)
.|+.++.|++|+..+ .+..+.+|.+.|.+++|+ +++|++|+.||+|++||+.++.......
T Consensus 49 gGG~~gvI~L~~~~r~~~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i-------------- 114 (568)
T PTZ00420 49 GGGLIGAIRLENQMRKPPVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEI-------------- 114 (568)
T ss_pred CCCceeEEEeeecCCCceEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCcccccc--------------
Confidence 467789999999764 456788999999999998 4699999999999999998653211000
Q ss_pred CCCCceeEecccceeeeeecCCCEeEEEEcCCCCE-EEEEeCCCcEEEEEccCCeEEEEeecCCCceEEEEeCCCC-eEE
Q 047325 134 IKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCGL-LYTASWDRTFKVWRISDSKCLESVSAHDDAVNSVVSSSEG-LIF 211 (368)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~ 211 (368)
......+.+|...|.+++|+|++.. |++++.|+.|++||+++++.+..+. +...|.+++|+++| +|+
T Consensus 115 ----------~~p~~~L~gH~~~V~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i~-~~~~V~SlswspdG~lLa 183 (568)
T PTZ00420 115 ----------KDPQCILKGHKKKISIIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQIN-MPKKLSSLKWNIKGNLLS 183 (568)
T ss_pred ----------ccceEEeecCCCcEEEEEECCCCCeEEEEEeCCCeEEEEECCCCcEEEEEe-cCCcEEEEEECCCCCEEE
Confidence 0012234569999999999998875 5788999999999999998877776 56789999999999 888
Q ss_pred EEcCCCeEEEEEcCCCCCCcccccceeeccccccEEE-----EEEcCCCCEEEEecCCC----cEEEEeCCCccccceee
Q 047325 212 TGSADGTVKVWKREQHGKGTKHSLAQTLLKQECAVTA-----LVVSSSRSIVYCGSSDG----LVNFWEREKQLSHGGVL 282 (368)
Q Consensus 212 ~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~i~~-----~~~~~~~~~l~~~~~dg----~i~i~d~~~~~~~~~~~ 282 (368)
+++.|+.|++||++.+. ....+.+|.+.+.+ ..|++++++|++++.|+ .|++||++....+....
T Consensus 184 t~s~D~~IrIwD~Rsg~------~i~tl~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~ 257 (568)
T PTZ00420 184 GTCVGKHMHIIDPRKQE------IASSFHIHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTM 257 (568)
T ss_pred EEecCCEEEEEECCCCc------EEEEEecccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEE
Confidence 88999999999998763 34566777765433 23568888999877664 79999999643333332
Q ss_pred ec--cceEEE-EEEe-CCCEEEEeeCCCeEEEEecCCCceeeeEeeeccccCeeEEEEecCCe
Q 047325 283 KG--HKLAVL-CLAA-AGKLVFSGSADKTICVWRRDGAIHTCLSVLTGHTGPVKCLAVEEDRD 341 (368)
Q Consensus 283 ~~--~~~~~~-~~~~-~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~ 341 (368)
.. +...++ .+.+ ++.++++|+.|+.|++|++..+....+..+. +..++.+++|.|+..
T Consensus 258 ~ld~~~~~L~p~~D~~tg~l~lsGkGD~tIr~~e~~~~~~~~l~~~~-s~~p~~g~~f~Pkr~ 319 (568)
T PTZ00420 258 SIDNASAPLIPHYDESTGLIYLIGKGDGNCRYYQHSLGSIRKVNEYK-SCSPFRSFGFLPKQI 319 (568)
T ss_pred EecCCccceEEeeeCCCCCEEEEEECCCeEEEEEccCCcEEeecccc-cCCCccceEEccccc
Confidence 22 222221 2223 4889999999999999999776444455444 678899999999865
No 71
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=2e-31 Score=201.26 Aligned_cols=263 Identities=20% Similarity=0.305 Sum_probs=208.8
Q ss_pred CCcEEEEEecCC---EEEEccCCCcEEEEcCCcc----eecccCCCCCeeEEEEe--CCEEEEEeCCCeEEEEeecCCCc
Q 047325 44 EGHIYSLAASKD---LLYTGSDSKNIRVWKNLKE----FCGFKASSGLVKAIVIS--GEKIFTGHQDGKIRVWKISPKNQ 114 (368)
Q Consensus 44 ~~~i~~~~~~~~---~l~s~~~dg~i~iw~~~~~----~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~vw~~~~~~~ 114 (368)
++.|.+|+|++. +++.||.||+||+|++... -.....|.++|.+++|+ |..+++|+.|+.+++||+.+++.
T Consensus 27 ~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S~Q~ 106 (347)
T KOG0647|consen 27 EDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLASGQV 106 (347)
T ss_pred ccchheeEeccccCceEEecccCCceEEEEEecCCcccchhhhccCCCeEEEEEccCCceEEeeccCCceEEEEccCCCe
Confidence 677999999974 7779999999999998752 23456799999999998 88999999999999999999863
Q ss_pred cccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcCCCC--EEEEEeCCCcEEEEEccCCeEEEEe
Q 047325 115 SVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCG--LLYTASWDRTFKVWRISDSKCLESV 192 (368)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~l~~~~~d~~i~iwd~~~~~~~~~~ 192 (368)
... ..|..+|.++.|-+... .|++|+.|.+|+.||+++..++.++
T Consensus 107 ~~v---------------------------------~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~ 153 (347)
T KOG0647|consen 107 SQV---------------------------------AAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATL 153 (347)
T ss_pred eee---------------------------------eecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeee
Confidence 222 22999999999988655 8999999999999999999999888
Q ss_pred ecCCCceEEEEeCCCCeEEEEcCCCeEEEEEcCCCCCCcccccceeeccccccEEEEEEcCCCCEEEEecCCCcEEEEeC
Q 047325 193 SAHDDAVNSVVSSSEGLIFTGSADGTVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSSSRSIVYCGSSDGLVNFWER 272 (368)
Q Consensus 193 ~~~~~~v~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~ 272 (368)
.- .+.+.++..-. .+++++..++.|.+|+++.+... .........-.++|++..++....+.|+-+|.+.+..+
T Consensus 154 ~L-PeRvYa~Dv~~-pm~vVata~r~i~vynL~n~~te----~k~~~SpLk~Q~R~va~f~d~~~~alGsiEGrv~iq~i 227 (347)
T KOG0647|consen 154 QL-PERVYAADVLY-PMAVVATAERHIAVYNLENPPTE----FKRIESPLKWQTRCVACFQDKDGFALGSIEGRVAIQYI 227 (347)
T ss_pred ec-cceeeehhccC-ceeEEEecCCcEEEEEcCCCcch----hhhhcCcccceeeEEEEEecCCceEeeeecceEEEEec
Confidence 74 45677765432 27888899999999999765321 11111223456889999898888899999999999988
Q ss_pred CCc-cccceeeeccce---------EE--EEEEeCCCEEEEeeCCCeEEEEecCCCceeeeEeeeccccCeeEEEEecCC
Q 047325 273 EKQ-LSHGGVLKGHKL---------AV--LCLAAAGKLVFSGSADKTICVWRRDGAIHTCLSVLTGHTGPVKCLAVEEDR 340 (368)
Q Consensus 273 ~~~-~~~~~~~~~~~~---------~~--~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~l~~~~~~ 340 (368)
..+ ......++.|.. .| ++|.|....|++++.||++.+||-+.. ..+++.+.|..+|++.+|+.+|
T Consensus 228 d~~~~~~nFtFkCHR~~~~~~~~VYaVNsi~FhP~hgtlvTaGsDGtf~FWDkdar--~kLk~s~~~~qpItcc~fn~~G 305 (347)
T KOG0647|consen 228 DDPNPKDNFTFKCHRSTNSVNDDVYAVNSIAFHPVHGTLVTAGSDGTFSFWDKDAR--TKLKTSETHPQPITCCSFNRNG 305 (347)
T ss_pred CCCCccCceeEEEeccCCCCCCceEEecceEeecccceEEEecCCceEEEecchhh--hhhhccCcCCCccceeEecCCC
Confidence 763 222344555542 12 567788889999999999999987655 6677888899999999999999
Q ss_pred eeeecCC
Q 047325 341 DSSSSTS 347 (368)
Q Consensus 341 ~~~~~~~ 347 (368)
.++|.+-
T Consensus 306 ~ifaYA~ 312 (347)
T KOG0647|consen 306 SIFAYAL 312 (347)
T ss_pred CEEEEEe
Confidence 9887664
No 72
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=100.00 E-value=1.3e-31 Score=207.25 Aligned_cols=248 Identities=21% Similarity=0.300 Sum_probs=201.1
Q ss_pred ccccccCCCceeeeccCcCCcEEEEEecC--CEEEEccCCCcEEEEcCCcce--ecccCCCCCeeEEEEe--CCEEEEEe
Q 047325 26 QFEENLPQNGLIGSLVREEGHIYSLAASK--DLLYTGSDSKNIRVWKNLKEF--CGFKASSGLVKAIVIS--GEKIFTGH 99 (368)
Q Consensus 26 ~~~~~~~~~~~~~~~~~h~~~i~~~~~~~--~~l~s~~~dg~i~iw~~~~~~--~~~~~~~~~v~~~~~~--~~~l~s~~ 99 (368)
-|.-++..+++...+.+|++.|+++.|+. .+||||+.+|.|+||+..+.. ..+......+.=+.|. +..|++|+
T Consensus 88 AflW~~~~ge~~~eltgHKDSVt~~~FshdgtlLATGdmsG~v~v~~~stg~~~~~~~~e~~dieWl~WHp~a~illAG~ 167 (399)
T KOG0296|consen 88 AFLWDISTGEFAGELTGHKDSVTCCSFSHDGTLLATGDMSGKVLVFKVSTGGEQWKLDQEVEDIEWLKWHPRAHILLAGS 167 (399)
T ss_pred EEEEEccCCcceeEecCCCCceEEEEEccCceEEEecCCCccEEEEEcccCceEEEeecccCceEEEEecccccEEEeec
Confidence 34556777889999999999999999974 499999999999999987543 3333344556666666 78999999
Q ss_pred CCCeEEEEeecCCCccccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcCCCCEEEEEeCCCcEE
Q 047325 100 QDGKIRVWKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCGLLYTASWDRTFK 179 (368)
Q Consensus 100 ~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~ 179 (368)
.||.+-+|.+.++. ..+++.||..++++=.|.|+|+.++++..||+|+
T Consensus 168 ~DGsvWmw~ip~~~--------------------------------~~kv~~Gh~~~ct~G~f~pdGKr~~tgy~dgti~ 215 (399)
T KOG0296|consen 168 TDGSVWMWQIPSQA--------------------------------LCKVMSGHNSPCTCGEFIPDGKRILTGYDDGTII 215 (399)
T ss_pred CCCcEEEEECCCcc--------------------------------eeeEecCCCCCcccccccCCCceEEEEecCceEE
Confidence 99999999998753 2345667999999999999999999999999999
Q ss_pred EEEccCCeEEEEeec---------------------------------------------------CCCceEEEEeCCCC
Q 047325 180 VWRISDSKCLESVSA---------------------------------------------------HDDAVNSVVSSSEG 208 (368)
Q Consensus 180 iwd~~~~~~~~~~~~---------------------------------------------------~~~~v~~~~~~~~~ 208 (368)
+||+.+++++..+.. +...+.|+.+.|..
T Consensus 216 ~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve~~~~s 295 (399)
T KOG0296|consen 216 VWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNGTVPELKPSQEELDESVESIPSS 295 (399)
T ss_pred EEecCCCceeEEecccccCcCCccccccccceeEeccCCccEEEEccccceEEEecCCCCccccccchhhhhhhhhcccc
Confidence 999999988776641 01112223333322
Q ss_pred ----eEEEEcCCCeEEEEEcCCCCCCcccccceeeccccccEEEEEEcCCCCEEEEecCCCcEEEEeCCCccccceeeec
Q 047325 209 ----LIFTGSADGTVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSSSRSIVYCGSSDGLVNFWEREKQLSHGGVLKG 284 (368)
Q Consensus 209 ----~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~ 284 (368)
+.++|+-||+|.|||+... ..+....|+.+|..+.|.+ ..+|++++.+|.|+.||.++++.. ..+.+
T Consensus 296 s~lpL~A~G~vdG~i~iyD~a~~-------~~R~~c~he~~V~~l~w~~-t~~l~t~c~~g~v~~wDaRtG~l~-~~y~G 366 (399)
T KOG0296|consen 296 SKLPLAACGSVDGTIAIYDLAAS-------TLRHICEHEDGVTKLKWLN-TDYLLTACANGKVRQWDARTGQLK-FTYTG 366 (399)
T ss_pred cccchhhcccccceEEEEecccc-------hhheeccCCCceEEEEEcC-cchheeeccCceEEeeeccccceE-EEEec
Confidence 5688899999999999764 3556667889999999998 789999999999999999998776 78899
Q ss_pred cceEEEEEE--eCCCEEEEeeCCCeEEEEecC
Q 047325 285 HKLAVLCLA--AAGKLVFSGSADKTICVWRRD 314 (368)
Q Consensus 285 ~~~~~~~~~--~~~~~l~~~~~dg~i~iw~~~ 314 (368)
|...|++|. |+.++++++|.|++.+||++.
T Consensus 367 H~~~Il~f~ls~~~~~vvT~s~D~~a~VF~v~ 398 (399)
T KOG0296|consen 367 HQMGILDFALSPQKRLVVTVSDDNTALVFEVP 398 (399)
T ss_pred CchheeEEEEcCCCcEEEEecCCCeEEEEecC
Confidence 999997765 689999999999999999753
No 73
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1.7e-31 Score=202.77 Aligned_cols=255 Identities=18% Similarity=0.283 Sum_probs=202.4
Q ss_pred EEEccCCCcEEEEcCC--------------cceecccCCCCCeeEEEEeCCEEEEEeCCCeEEEEeecCCCccccccCCc
Q 047325 57 LYTGSDSKNIRVWKNL--------------KEFCGFKASSGLVKAIVISGEKIFTGHQDGKIRVWKISPKNQSVHKRAGT 122 (368)
Q Consensus 57 l~s~~~dg~i~iw~~~--------------~~~~~~~~~~~~v~~~~~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~ 122 (368)
|++|+....|.=+++. .++-.+..|.++|++++.++.++++|+.|-+|+|||+....+....
T Consensus 4 iIvGtYE~~i~Gf~l~~~~~~~~~s~~~~l~~lF~~~aH~~sitavAVs~~~~aSGssDetI~IYDm~k~~qlg~l---- 79 (362)
T KOG0294|consen 4 IIVGTYEHVILGFKLDPEPKGCTDSVKPTLKPLFAFSAHAGSITALAVSGPYVASGSSDETIHIYDMRKRKQLGIL---- 79 (362)
T ss_pred EEEeeeeeEEEEEEeccCccccccccceeeeccccccccccceeEEEecceeEeccCCCCcEEEEeccchhhhcce----
Confidence 5666666665555432 1233578899999999999999999999999999999877643322
Q ss_pred cccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcCCCC--EEEEEeCCCcEEEEEccCCeEEEEeecCCCceE
Q 047325 123 LPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCG--LLYTASWDRTFKVWRISDSKCLESVSAHDDAVN 200 (368)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~ 200 (368)
..|.+.|+++.|.++.. .|++|+.||.|.+|+....+++..+++|.+.|+
T Consensus 80 ----------------------------l~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~W~~~~slK~H~~~Vt 131 (362)
T KOG0294|consen 80 ----------------------------LSHAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVGSWELLKSLKAHKGQVT 131 (362)
T ss_pred ----------------------------eccccceEEEEecCCcchhheeeecCCCcEEEEEcCCeEEeeeecccccccc
Confidence 23999999999998764 899999999999999999999999999999999
Q ss_pred EEEeCCCC-eEEEEcCCCeEEEEEcCCCCCCcccccceeeccccccEEEEEEcCCCCEEEEecCCCcEEEEeCCCccccc
Q 047325 201 SVVSSSEG-LIFTGSADGTVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSSSRSIVYCGSSDGLVNFWEREKQLSHG 279 (368)
Q Consensus 201 ~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~ 279 (368)
.++.+|.+ +-++.+.|+.+++||+-.+... ... .-....+.+.|+|.|.+++.+..++ |-+|.+++.....
T Consensus 132 ~lsiHPS~KLALsVg~D~~lr~WNLV~Gr~a----~v~---~L~~~at~v~w~~~Gd~F~v~~~~~-i~i~q~d~A~v~~ 203 (362)
T KOG0294|consen 132 DLSIHPSGKLALSVGGDQVLRTWNLVRGRVA----FVL---NLKNKATLVSWSPQGDHFVVSGRNK-IDIYQLDNASVFR 203 (362)
T ss_pred eeEecCCCceEEEEcCCceeeeehhhcCccc----eee---ccCCcceeeEEcCCCCEEEEEeccE-EEEEecccHhHhh
Confidence 99999999 6678899999999999766331 111 1122234489999999998887755 8999988755443
Q ss_pred eeeeccceEEEEEEe-CCCEEEEeeCCCeEEEEecCCCceeeeEeeeccccCeeEEEE--ecCCeeeecCCcceEEEEEe
Q 047325 280 GVLKGHKLAVLCLAA-AGKLVFSGSADKTICVWRRDGAIHTCLSVLTGHTGPVKCLAV--EEDRDSSSSTSSCAQRWIVY 356 (368)
Q Consensus 280 ~~~~~~~~~~~~~~~-~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~~~~~~~~~~~~~w~l~ 356 (368)
... .+..+.++.+ ++..|++|++|+.|.+||.+.. .+...+.+|...|.++.+ .|++. +|+
T Consensus 204 ~i~--~~~r~l~~~~l~~~~L~vG~d~~~i~~~D~ds~--~~~~~~~AH~~RVK~i~~~~~~~~~------------~lv 267 (362)
T KOG0294|consen 204 EIE--NPKRILCATFLDGSELLVGGDNEWISLKDTDSD--TPLTEFLAHENRVKDIASYTNPEHE------------YLV 267 (362)
T ss_pred hhh--ccccceeeeecCCceEEEecCCceEEEeccCCC--ccceeeecchhheeeeEEEecCCce------------EEE
Confidence 222 2255667776 6889999999999999987764 788899999999999985 35565 788
Q ss_pred eCCcccccccC
Q 047325 357 SGSLDKSDDDV 367 (368)
Q Consensus 357 sg~~D~~v~i~ 367 (368)
|+|.||.|++|
T Consensus 268 TaSSDG~I~vW 278 (362)
T KOG0294|consen 268 TASSDGFIKVW 278 (362)
T ss_pred EeccCceEEEE
Confidence 88888888888
No 74
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=100.00 E-value=5.2e-33 Score=222.34 Aligned_cols=242 Identities=18% Similarity=0.262 Sum_probs=203.9
Q ss_pred cceecccCCCCCeeEEEEe---CCEEEEEeCCCeEEEEeecCCCccccccCCccccceeeeeccCCCCceeEecccceee
Q 047325 73 KEFCGFKASSGLVKAIVIS---GEKIFTGHQDGKIRVWKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTAL 149 (368)
Q Consensus 73 ~~~~~~~~~~~~v~~~~~~---~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (368)
+.+..+.+|+..|+++.|. +.+|++++.|+.|+||++-..... .+.
T Consensus 205 k~~~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~-------------------------------lrt 253 (503)
T KOG0282|consen 205 KLSHNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRC-------------------------------LRT 253 (503)
T ss_pred hheeeccCCccccchhhhccceeeEEEecCCCceEEEEEEecCcce-------------------------------ehh
Confidence 4566789999999999987 789999999999999999874322 334
Q ss_pred eeecCCCEeEEEEcCCCCEEEEEeCCCcEEEEEccCCeEEEEeecCCCceEEEEeCCCC--eEEEEcCCCeEEEEEcCCC
Q 047325 150 WIRHSDAVSCMSLDQDCGLLYTASWDRTFKVWRISDSKCLESVSAHDDAVNSVVSSSEG--LIFTGSADGTVKVWKREQH 227 (368)
Q Consensus 150 ~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~--~l~~~~~dg~i~i~d~~~~ 227 (368)
+.+|..+|.+++|+++|..|++++.|+.|++||+++|+++..+. ....+.|+.++|++ .+++|+.|+.|+.||+|.+
T Consensus 254 f~gH~k~Vrd~~~s~~g~~fLS~sfD~~lKlwDtETG~~~~~f~-~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~ 332 (503)
T KOG0282|consen 254 FKGHRKPVRDASFNNCGTSFLSASFDRFLKLWDTETGQVLSRFH-LDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSG 332 (503)
T ss_pred hhcchhhhhhhhccccCCeeeeeecceeeeeeccccceEEEEEe-cCCCceeeecCCCCCcEEEEecCCCcEEEEeccch
Confidence 55699999999999999999999999999999999999999997 45678999999998 8999999999999999987
Q ss_pred CCCcccccceeeccccccEEEEEEcCCCCEEEEecCCCcEEEEeCCCccccce--eeeccceEEEEEEeCCCEEEEeeCC
Q 047325 228 GKGTKHSLAQTLLKQECAVTALVVSSSRSIVYCGSSDGLVNFWEREKQLSHGG--VLKGHKLAVLCLAAAGKLVFSGSAD 305 (368)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~~~~~d 305 (368)
..++....|-+.|..+.|-++++.+++.+.|+.++||+.+.+..... ....|..+.+.++|++.++++-+.|
T Consensus 333 ------kvvqeYd~hLg~i~~i~F~~~g~rFissSDdks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~d 406 (503)
T KOG0282|consen 333 ------KVVQEYDRHLGAILDITFVDEGRRFISSSDDKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSMD 406 (503)
T ss_pred ------HHHHHHHhhhhheeeeEEccCCceEeeeccCccEEEEEcCCCccchhhcchhhccCcceecCCCCCeehhhccC
Confidence 46788888999999999999999999999999999999887654433 3446788889999999999999999
Q ss_pred CeEEEEecCCC-ceeeeEeeeccccC--eeEEEEecCCeeeecCCcceEE
Q 047325 306 KTICVWRRDGA-IHTCLSVLTGHTGP--VKCLAVEEDRDSSSSTSSCAQR 352 (368)
Q Consensus 306 g~i~iw~~~~~-~~~~~~~~~~h~~~--v~~l~~~~~~~~~~~~~~~~~~ 352 (368)
+.|.+|.+... .......+++|..+ -..+.|||||.+|+++++++++
T Consensus 407 N~i~ifs~~~~~r~nkkK~feGh~vaGys~~v~fSpDG~~l~SGdsdG~v 456 (503)
T KOG0282|consen 407 NYIAIFSTVPPFRLNKKKRFEGHSVAGYSCQVDFSPDGRTLCSGDSDGKV 456 (503)
T ss_pred ceEEEEecccccccCHhhhhcceeccCceeeEEEcCCCCeEEeecCCccE
Confidence 99999986533 22334567778643 6678999999966666555444
No 75
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=100.00 E-value=8.2e-32 Score=204.29 Aligned_cols=282 Identities=18% Similarity=0.260 Sum_probs=221.9
Q ss_pred eeeccCcCCcEEEEEecCC--EEEEccCCCcEEEEcCCc--------------------ceecccCCCCCeeEEEEe--C
Q 047325 37 IGSLVREEGHIYSLAASKD--LLYTGSDSKNIRVWKNLK--------------------EFCGFKASSGLVKAIVIS--G 92 (368)
Q Consensus 37 ~~~~~~h~~~i~~~~~~~~--~l~s~~~dg~i~iw~~~~--------------------~~~~~~~~~~~v~~~~~~--~ 92 (368)
...+..|++++.+-+|+++ ++|||+.|-.|+|.|+++ .+.++-.|...|+++.|. .
T Consensus 105 t~ylt~HK~~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPre 184 (430)
T KOG0640|consen 105 TKYLTSHKSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPRE 184 (430)
T ss_pred eEEEeecccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecchh
Confidence 4557889999999999866 999999999999999751 134566789999999999 6
Q ss_pred CEEEEEeCCCeEEEEeecCCCccccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcCCCCEEEEE
Q 047325 93 EKIFTGHQDGKIRVWKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCGLLYTA 172 (368)
Q Consensus 93 ~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~ 172 (368)
..|++|+.|++|+++|+.........+.- ....+|.++.|+|.|.+|++|
T Consensus 185 ~ILiS~srD~tvKlFDfsK~saKrA~K~~------------------------------qd~~~vrsiSfHPsGefllvg 234 (430)
T KOG0640|consen 185 TILISGSRDNTVKLFDFSKTSAKRAFKVF------------------------------QDTEPVRSISFHPSGEFLLVG 234 (430)
T ss_pred heEEeccCCCeEEEEecccHHHHHHHHHh------------------------------hccceeeeEeecCCCceEEEe
Confidence 79999999999999999865433222211 145689999999999999999
Q ss_pred eCCCcEEEEEccCCeEEEEe---ecCCCceEEEEeCCCC-eEEEEcCCCeEEEEEcCCCCCCcccccceeecc-c-cccE
Q 047325 173 SWDRTFKVWRISDSKCLESV---SAHDDAVNSVVSSSEG-LIFTGSADGTVKVWKREQHGKGTKHSLAQTLLK-Q-ECAV 246 (368)
Q Consensus 173 ~~d~~i~iwd~~~~~~~~~~---~~~~~~v~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~-~-~~~i 246 (368)
....++++||+.+.++...- ..|.+.|+++.+++.+ +.++++.||.|++||--.+ +++..+.. | ...|
T Consensus 235 TdHp~~rlYdv~T~QcfvsanPd~qht~ai~~V~Ys~t~~lYvTaSkDG~IklwDGVS~------rCv~t~~~AH~gsev 308 (430)
T KOG0640|consen 235 TDHPTLRLYDVNTYQCFVSANPDDQHTGAITQVRYSSTGSLYVTASKDGAIKLWDGVSN------RCVRTIGNAHGGSEV 308 (430)
T ss_pred cCCCceeEEeccceeEeeecCcccccccceeEEEecCCccEEEEeccCCcEEeeccccH------HHHHHHHhhcCCcee
Confidence 99999999999998876544 3588999999999999 8899999999999997654 34554432 3 3568
Q ss_pred EEEEEcCCCCEEEEecCCCcEEEEeCCCccccceeeecc-ceEE-----EEEEeCCCEEEEeeC-CCeEEEEecCCCcee
Q 047325 247 TALVVSSSRSIVYCGSSDGLVNFWEREKQLSHGGVLKGH-KLAV-----LCLAAAGKLVFSGSA-DKTICVWRRDGAIHT 319 (368)
Q Consensus 247 ~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~-~~~~-----~~~~~~~~~l~~~~~-dg~i~iw~~~~~~~~ 319 (368)
.+..|..+++++++.+.|..+++|.+.++..+....... .+.. ..|.....+++.-.+ .+.+.-||-++....
T Consensus 309 cSa~Ftkn~kyiLsSG~DS~vkLWEi~t~R~l~~YtGAg~tgrq~~rtqAvFNhtEdyVl~pDEas~slcsWdaRtadr~ 388 (430)
T KOG0640|consen 309 CSAVFTKNGKYILSSGKDSTVKLWEISTGRMLKEYTGAGTTGRQKHRTQAVFNHTEDYVLFPDEASNSLCSWDARTADRV 388 (430)
T ss_pred eeEEEccCCeEEeecCCcceeeeeeecCCceEEEEecCCcccchhhhhhhhhcCccceEEccccccCceeeccccchhhh
Confidence 999999999999999999999999999887764333221 1111 223334556655543 577999998887554
Q ss_pred eeEeeeccccCeeEEEEecCCeeeecCCcceEEEEEeeCCcccccccC
Q 047325 320 CLSVLTGHTGPVKCLAVEEDRDSSSSTSSCAQRWIVYSGSLDKSDDDV 367 (368)
Q Consensus 320 ~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~w~l~sg~~D~~v~i~ 367 (368)
.+.. .+|.+++..+.-+|.+. -+.|||.|...|.|
T Consensus 389 ~l~s-lgHn~a~R~i~HSP~~p------------~FmTcsdD~raRFW 423 (430)
T KOG0640|consen 389 ALLS-LGHNGAVRWIVHSPVEP------------AFMTCSDDFRARFW 423 (430)
T ss_pred hhcc-cCCCCCceEEEeCCCCC------------ceeeecccceeeee
Confidence 4444 47999999999999999 68899999999988
No 76
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=4.9e-32 Score=230.93 Aligned_cols=268 Identities=19% Similarity=0.263 Sum_probs=197.5
Q ss_pred ccc-CCCCCeeEEEEe--CCEEEEEeCCCeEEEEeecCCCccccccCC---------------cc-ccc-----------
Q 047325 77 GFK-ASSGLVKAIVIS--GEKIFTGHQDGKIRVWKISPKNQSVHKRAG---------------TL-PTL----------- 126 (368)
Q Consensus 77 ~~~-~~~~~v~~~~~~--~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~---------------~~-~~~----------- 126 (368)
.+. .|.+.|.++.|+ |+|||+|+.||.|+||.+...+........ .. ...
T Consensus 261 e~~~ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~ 340 (712)
T KOG0283|consen 261 EISNAHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSR 340 (712)
T ss_pred ccccccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCccccccccccccccccc
Confidence 345 899999999998 999999999999999998762221000000 00 000
Q ss_pred -eeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcCCCCEEEEEeCCCcEEEEEccCCeEEEEeecCCCceEEEEeC
Q 047325 127 -KDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCGLLYTASWDRTFKVWRISDSKCLESVSAHDDAVNSVVSS 205 (368)
Q Consensus 127 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~ 205 (368)
........-+.....+...+...+.||...|.++.|+.+ ++|++++.|.+|+||++...+++..|. |...|+|++|+
T Consensus 341 ~~~~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn-~fLLSSSMDKTVRLWh~~~~~CL~~F~-HndfVTcVaFn 418 (712)
T KOG0283|consen 341 KGSQSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKN-NFLLSSSMDKTVRLWHPGRKECLKVFS-HNDFVTCVAFN 418 (712)
T ss_pred cccCCccccCCCccccccccchhhhhccchhheecccccC-CeeEeccccccEEeecCCCcceeeEEe-cCCeeEEEEec
Confidence 000000112222334455667788999999999999976 589999999999999999999999997 99999999999
Q ss_pred CCC--eEEEEcCCCeEEEEEcCCCCCCcccccceeeccccccEEEEEEcCCCCEEEEecCCCcEEEEeCCCcccccee--
Q 047325 206 SEG--LIFTGSADGTVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSSSRSIVYCGSSDGLVNFWEREKQLSHGGV-- 281 (368)
Q Consensus 206 ~~~--~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~-- 281 (368)
|-. ++++|+-||.|+||++... .+........-|++++|.|+|+..+.|+.+|.+++|+.+..+.....
T Consensus 419 PvDDryFiSGSLD~KvRiWsI~d~-------~Vv~W~Dl~~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~~I 491 (712)
T KOG0283|consen 419 PVDDRYFISGSLDGKVRLWSISDK-------KVVDWNDLRDLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDFHI 491 (712)
T ss_pred ccCCCcEeecccccceEEeecCcC-------eeEeehhhhhhheeEEeccCCceEEEEEeccEEEEEEccCCeEEEeeeE
Confidence 966 9999999999999999754 23444445578999999999999999999999999998754332211
Q ss_pred ------eeccceEEEEEEe---CCCEEEEeeCCCeEEEEecCCCceeeeEeeecccc--CeeEEEEecCCeeeecCCcce
Q 047325 282 ------LKGHKLAVLCLAA---AGKLVFSGSADKTICVWRRDGAIHTCLSVLTGHTG--PVKCLAVEEDRDSSSSTSSCA 350 (368)
Q Consensus 282 ------~~~~~~~~~~~~~---~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~--~v~~l~~~~~~~~~~~~~~~~ 350 (368)
...|. .|+.|.+ +...+++.+.|..|||||.+.. .++..++++.. .=....|+.||+
T Consensus 492 ~~~~~Kk~~~~-rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~--~lv~KfKG~~n~~SQ~~Asfs~Dgk--------- 559 (712)
T KOG0283|consen 492 RLHNKKKKQGK-RITGLQFFPGDPDEVLVTSNDSRIRIYDGRDK--DLVHKFKGFRNTSSQISASFSSDGK--------- 559 (712)
T ss_pred eeccCccccCc-eeeeeEecCCCCCeEEEecCCCceEEEeccch--hhhhhhcccccCCcceeeeEccCCC---------
Confidence 11233 6777765 3445777789999999988655 56666776543 234568999999
Q ss_pred EEEEEeeCCcccccccCC
Q 047325 351 QRWIVYSGSLDKSDDDVH 368 (368)
Q Consensus 351 ~~w~l~sg~~D~~v~i~h 368 (368)
.+++|++|..|.+|+
T Consensus 560 ---~IVs~seDs~VYiW~ 574 (712)
T KOG0283|consen 560 ---HIVSASEDSWVYIWK 574 (712)
T ss_pred ---EEEEeecCceEEEEe
Confidence 566777777777774
No 77
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=2.3e-30 Score=197.12 Aligned_cols=303 Identities=16% Similarity=0.215 Sum_probs=216.1
Q ss_pred CCCccccccccCCCceeeeccCcCCcEEEEEec--CCEEEEccCCCcEEEEcCCcce------ecccCCCCCeeEEEEe-
Q 047325 21 NPGWSQFEENLPQNGLIGSLVREEGHIYSLAAS--KDLLYTGSDSKNIRVWKNLKEF------CGFKASSGLVKAIVIS- 91 (368)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~--~~~l~s~~~dg~i~iw~~~~~~------~~~~~~~~~v~~~~~~- 91 (368)
+..|...++..-..-.+..|++|.+.|++++|+ |..|+|++.|++|++|++..-. ......-+.-+.+.|.
T Consensus 63 ~~~~k~~q~~f~Hpl~~~~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~Fap 142 (420)
T KOG2096|consen 63 NDQWKAKQPTFVHPLNVSVLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYDHPTRVVFAP 142 (420)
T ss_pred hhhhcccCCCcccchhhhhhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhccccCCCceEEEECC
Confidence 445666666666666778899999999999997 5599999999999999976311 1111222345677777
Q ss_pred --CCEEEEEeCCCeEEEEeecCCCccccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcCCCCEE
Q 047325 92 --GEKIFTGHQDGKIRVWKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCGLL 169 (368)
Q Consensus 92 --~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l 169 (368)
...+++.-...++++|.+...+.-... .... .......-..|.-.+..+-...++.+|
T Consensus 143 Dc~s~vv~~~~g~~l~vyk~~K~~dG~~~-~~~v-------------------~~D~~~f~~kh~v~~i~iGiA~~~k~i 202 (420)
T KOG2096|consen 143 DCKSVVVSVKRGNKLCVYKLVKKTDGSGS-HHFV-------------------HIDNLEFERKHQVDIINIGIAGNAKYI 202 (420)
T ss_pred CcceEEEEEccCCEEEEEEeeecccCCCC-cccc-------------------cccccccchhcccceEEEeecCCceEE
Confidence 346777777788999987654321000 0000 000000111266677777788888999
Q ss_pred EEEeCCCcEEEEEccCCeEEEEeecCCCceEEEEeCCCC-eEEEEcCCCeEEEEEcCCCCCC--cccccceeeccccccE
Q 047325 170 YTASWDRTFKVWRISDSKCLESVSAHDDAVNSVVSSSEG-LIFTGSADGTVKVWKREQHGKG--TKHSLAQTLLKQECAV 246 (368)
Q Consensus 170 ~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~--~~~~~~~~~~~~~~~i 246 (368)
++++.|..|.+||++ |+.+..+......-...+.+|+| .+++++..-.|++|.+--...+ .+......+.+|+..|
T Consensus 203 msas~dt~i~lw~lk-Gq~L~~idtnq~~n~~aavSP~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV 281 (420)
T KOG2096|consen 203 MSASLDTKICLWDLK-GQLLQSIDTNQSSNYDAAVSPDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAV 281 (420)
T ss_pred EEecCCCcEEEEecC-CceeeeeccccccccceeeCCCCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhhe
Confidence 999999999999998 99999998777777888999999 8888899999999997544332 2334456788999999
Q ss_pred EEEEEcCCCCEEEEecCCCcEEEEeCCCc----cccc--ee--e----eccceEEEEEEeCCCEEEEeeCCCeEEEEecC
Q 047325 247 TALVVSSSRSIVYCGSSDGLVNFWEREKQ----LSHG--GV--L----KGHKLAVLCLAAAGKLVFSGSADKTICVWRRD 314 (368)
Q Consensus 247 ~~~~~~~~~~~l~~~~~dg~i~i~d~~~~----~~~~--~~--~----~~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~ 314 (368)
..++|+++...+++.+.||.+++||+.-. +.+. .. . .+.....+.++|+++.|+.+. ...+++|..+
T Consensus 282 ~~~aFsn~S~r~vtvSkDG~wriwdtdVrY~~~qDpk~Lk~g~~pl~aag~~p~RL~lsP~g~~lA~s~-gs~l~~~~se 360 (420)
T KOG2096|consen 282 LAAAFSNSSTRAVTVSKDGKWRIWDTDVRYEAGQDPKILKEGSAPLHAAGSEPVRLELSPSGDSLAVSF-GSDLKVFASE 360 (420)
T ss_pred eeeeeCCCcceeEEEecCCcEEEeeccceEecCCCchHhhcCCcchhhcCCCceEEEeCCCCcEEEeec-CCceEEEEcc
Confidence 99999999999999999999999997621 1110 01 0 111223488999999998765 4469999776
Q ss_pred CCceeeeEee-eccccCeeEEEEecCCeeeecCC
Q 047325 315 GAIHTCLSVL-TGHTGPVKCLAVEEDRDSSSSTS 347 (368)
Q Consensus 315 ~~~~~~~~~~-~~h~~~v~~l~~~~~~~~~~~~~ 347 (368)
.+ +....+ ..|...|.+|+|+++|++++++.
T Consensus 361 ~g--~~~~~~e~~h~~~Is~is~~~~g~~~atcG 392 (420)
T KOG2096|consen 361 DG--KDYPELEDIHSTTISSISYSSDGKYIATCG 392 (420)
T ss_pred cC--ccchhHHHhhcCceeeEEecCCCcEEeeec
Confidence 65 222222 45999999999999999665543
No 78
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=6.4e-31 Score=218.26 Aligned_cols=259 Identities=20% Similarity=0.348 Sum_probs=211.2
Q ss_pred EEEEccCCCcEEEEcCCcce-e-cccCCCCCeeEEEEe--CCEEEEEeCCCeEEEEeecCCCccccccCCccccceeeee
Q 047325 56 LLYTGSDSKNIRVWKNLKEF-C-GFKASSGLVKAIVIS--GEKIFTGHQDGKIRVWKISPKNQSVHKRAGTLPTLKDIFK 131 (368)
Q Consensus 56 ~l~s~~~dg~i~iw~~~~~~-~-~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~ 131 (368)
.||+|. ...|++|+..+.. . ....+...|+++.|+ |.+|++|..+|.|.|||..+.+........
T Consensus 190 ~laVal-g~~vylW~~~s~~v~~l~~~~~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k~~~~~~~~---------- 258 (484)
T KOG0305|consen 190 VLAVAL-GQSVYLWSASSGSVTELCSFGEELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQKKTRTLRGS---------- 258 (484)
T ss_pred eEEEEe-cceEEEEecCCCceEEeEecCCCceEEEEECCCCCEEEEeecCCeEEEEehhhccccccccCC----------
Confidence 666654 4579999976432 2 233348899999998 999999999999999999877654444322
Q ss_pred ccCCCCceeEecccceeeeeecCCCEeEEEEcCCCCEEEEEeCCCcEEEEEccCCeEEEE-eecCCCceEEEEeCCCC-e
Q 047325 132 SSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCGLLYTASWDRTFKVWRISDSKCLES-VSAHDDAVNSVVSSSEG-L 209 (368)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~-~~~~~~~v~~~~~~~~~-~ 209 (368)
|...|-+++|+ +..+.+|+.|+.|..+|++..+.... +.+|...|..+.|++++ +
T Consensus 259 ---------------------h~~rvg~laW~--~~~lssGsr~~~I~~~dvR~~~~~~~~~~~H~qeVCgLkws~d~~~ 315 (484)
T KOG0305|consen 259 ---------------------HASRVGSLAWN--SSVLSSGSRDGKILNHDVRISQHVVSTLQGHRQEVCGLKWSPDGNQ 315 (484)
T ss_pred ---------------------cCceeEEEecc--CceEEEecCCCcEEEEEEecchhhhhhhhcccceeeeeEECCCCCe
Confidence 88999999998 56899999999999999998876655 88999999999999999 9
Q ss_pred EEEEcCCCeEEEEEcCCCCCCcccccceeeccccccEEEEEEcC-CCCEEEEe--cCCCcEEEEeCCCccccceeeeccc
Q 047325 210 IFTGSADGTVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSS-SRSIVYCG--SSDGLVNFWEREKQLSHGGVLKGHK 286 (368)
Q Consensus 210 l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~--~~dg~i~i~d~~~~~~~~~~~~~~~ 286 (368)
+++|+.|+.+.|||.... .+...+..|...|.+++|+| ...+||+| +.|++|++||..++..+.....+..
T Consensus 316 lASGgnDN~~~Iwd~~~~------~p~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~~i~~vdtgsQ 389 (484)
T KOG0305|consen 316 LASGGNDNVVFIWDGLSP------EPKFTFTEHTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTGARIDSVDTGSQ 389 (484)
T ss_pred eccCCCccceEeccCCCc------cccEEEeccceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCCcEecccccCCc
Confidence 999999999999999544 35778889999999999999 56688885 4799999999999888866666666
Q ss_pred eEEEEEEeCCCEEEEe--eCCCeEEEEecCCCceeeeEeeeccccCeeEEEEecCCeeeecCCcceEEEEEeeCCccccc
Q 047325 287 LAVLCLAAAGKLVFSG--SADKTICVWRRDGAIHTCLSVLTGHTGPVKCLAVEEDRDSSSSTSSCAQRWIVYSGSLDKSD 364 (368)
Q Consensus 287 ~~~~~~~~~~~~l~~~--~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~w~l~sg~~D~~v 364 (368)
..-+.+++..+-|+++ ..++.|.||++.+. ..+..+.+|...|..++++|||. .+++|+.|.++
T Consensus 390 VcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps~--~~~~~l~gH~~RVl~la~SPdg~------------~i~t~a~DETl 455 (484)
T KOG0305|consen 390 VCSLIWSKKYKELLSTHGYSENQITLWKYPSM--KLVAELLGHTSRVLYLALSPDGE------------TIVTGAADETL 455 (484)
T ss_pred eeeEEEcCCCCEEEEecCCCCCcEEEEecccc--ceeeeecCCcceeEEEEECCCCC------------EEEEecccCcE
Confidence 5556666666555554 45778999988775 78889999999999999999999 56677777777
Q ss_pred ccCC
Q 047325 365 DDVH 368 (368)
Q Consensus 365 ~i~h 368 (368)
|+|.
T Consensus 456 rfw~ 459 (484)
T KOG0305|consen 456 RFWN 459 (484)
T ss_pred Eecc
Confidence 7663
No 79
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=100.00 E-value=2.3e-30 Score=213.60 Aligned_cols=239 Identities=27% Similarity=0.455 Sum_probs=195.0
Q ss_pred ecccCCCCCeeEEEEe--CCEEEEEeCCCeEEEEeecCCCccccccCCccccceeeeeccCCCCceeEecccceeeeeec
Q 047325 76 CGFKASSGLVKAIVIS--GEKIFTGHQDGKIRVWKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRH 153 (368)
Q Consensus 76 ~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (368)
..+++|..+|.+++|+ +++|++++.||.+++|++.+++... .+..|
T Consensus 3 ~~~~~h~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~--------------------------------~~~~~ 50 (289)
T cd00200 3 RTLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLR--------------------------------TLKGH 50 (289)
T ss_pred hHhcccCCCEEEEEEcCCCCEEEEeecCcEEEEEEeeCCCcEE--------------------------------EEecC
Confidence 4567899999999998 5899999999999999998765211 12237
Q ss_pred CCCEeEEEEcCCCCEEEEEeCCCcEEEEEccCCeEEEEeecCCCceEEEEeCCCC-eEEEEcCCCeEEEEEcCCCCCCcc
Q 047325 154 SDAVSCMSLDQDCGLLYTASWDRTFKVWRISDSKCLESVSAHDDAVNSVVSSSEG-LIFTGSADGTVKVWKREQHGKGTK 232 (368)
Q Consensus 154 ~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~ 232 (368)
...+..+.|.|+++++++++.||.|++||+.+++.+..+..|...+.++.|++++ .+++++.++.|++||++..
T Consensus 51 ~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~----- 125 (289)
T cd00200 51 TGPVRDVAASADGTYLASGSSDKTIRLWDLETGECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETG----- 125 (289)
T ss_pred CcceeEEEECCCCCEEEEEcCCCeEEEEEcCcccceEEEeccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCCc-----
Confidence 8888999999999999999999999999999988888899999999999999988 7777777999999999854
Q ss_pred cccceeeccccccEEEEEEcCCCCEEEEecCCCcEEEEeCCCccccceeeeccceEEE--EEEeCCCEEEEeeCCCeEEE
Q 047325 233 HSLAQTLLKQECAVTALVVSSSRSIVYCGSSDGLVNFWEREKQLSHGGVLKGHKLAVL--CLAAAGKLVFSGSADKTICV 310 (368)
Q Consensus 233 ~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~~~~~dg~i~i 310 (368)
.....+..|...+.+++|+|++.++++++.++.|++||+++.+.. ..+..|...+. +++++++.+++++.||.|++
T Consensus 126 -~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~-~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i 203 (289)
T cd00200 126 -KCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGKCV-ATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKL 203 (289)
T ss_pred -EEEEEeccCCCcEEEEEEcCcCCEEEEEcCCCcEEEEEccccccc-eeEecCccccceEEECCCcCEEEEecCCCcEEE
Confidence 234555678889999999999999999988999999999866554 44556665664 45567779999999999999
Q ss_pred EecCCCceeeeEeeeccccCeeEEEEecCCeeeecC--CcceEEEEE
Q 047325 311 WRRDGAIHTCLSVLTGHTGPVKCLAVEEDRDSSSST--SSCAQRWIV 355 (368)
Q Consensus 311 w~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~--~~~~~~w~l 355 (368)
||+... ..+..+..|..++.++.|+|++.+++++ ++...+|.+
T Consensus 204 ~d~~~~--~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~i~~~ 248 (289)
T cd00200 204 WDLSTG--KCLGTLRGHENGVNSVAFSPDGYLLASGSEDGTIRVWDL 248 (289)
T ss_pred EECCCC--ceecchhhcCCceEEEEEcCCCcEEEEEcCCCcEEEEEc
Confidence 998775 5667777899999999999998855544 233444444
No 80
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.1e-31 Score=229.62 Aligned_cols=241 Identities=22% Similarity=0.333 Sum_probs=207.7
Q ss_pred cccCCCCCeeEEEEe--CCEEEEEeCCCeEEEEeecCCCccccccCCccccceeeeeccCCCCceeEecccceeeeeecC
Q 047325 77 GFKASSGLVKAIVIS--GEKIFTGHQDGKIRVWKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHS 154 (368)
Q Consensus 77 ~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (368)
.+......|..++|. .-.++++-..|.|++||.+-+.....+. +|.
T Consensus 4 kfEskSsRvKglsFHP~rPwILtslHsG~IQlWDYRM~tli~rFd--------------------------------eHd 51 (1202)
T KOG0292|consen 4 KFESKSSRVKGLSFHPKRPWILTSLHSGVIQLWDYRMGTLIDRFD--------------------------------EHD 51 (1202)
T ss_pred hhhcccccccceecCCCCCEEEEeecCceeeeehhhhhhHHhhhh--------------------------------ccC
Confidence 456677889999998 4589999999999999998776544333 399
Q ss_pred CCEeEEEEcCCCCEEEEEeCCCcEEEEEccCCeEEEEeecCCCceEEEEeCCCC-eEEEEcCCCeEEEEEcCCCCCCccc
Q 047325 155 DAVSCMSLDQDCGLLYTASWDRTFKVWRISDSKCLESVSAHDDAVNSVVSSSEG-LIFTGSADGTVKVWKREQHGKGTKH 233 (368)
Q Consensus 155 ~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~ 233 (368)
++|..+.|+|++.++++|+.|-.|++|+..+.+++.++.+|-..|+.+.|++.- .+++++.|.+|+||+..+.
T Consensus 52 GpVRgv~FH~~qplFVSGGDDykIkVWnYk~rrclftL~GHlDYVRt~~FHheyPWIlSASDDQTIrIWNwqsr------ 125 (1202)
T KOG0292|consen 52 GPVRGVDFHPTQPLFVSGGDDYKIKVWNYKTRRCLFTLLGHLDYVRTVFFHHEYPWILSASDDQTIRIWNWQSR------ 125 (1202)
T ss_pred CccceeeecCCCCeEEecCCccEEEEEecccceehhhhccccceeEEeeccCCCceEEEccCCCeEEEEeccCC------
Confidence 999999999999999999999999999999999999999999999999999988 9999999999999999866
Q ss_pred ccceeeccccccEEEEEEcCCCCEEEEecCCCcEEEEeCCCcc----------------------------ccceeeecc
Q 047325 234 SLAQTLLKQECAVTALVVSSSRSIVYCGSSDGLVNFWEREKQL----------------------------SHGGVLKGH 285 (368)
Q Consensus 234 ~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~----------------------------~~~~~~~~~ 285 (368)
.++..+.+|...|.|..|+|....+++++-|.+|++||+..-+ ..+..+.+|
T Consensus 126 ~~iavltGHnHYVMcAqFhptEDlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGH 205 (1202)
T KOG0292|consen 126 KCIAVLTGHNHYVMCAQFHPTEDLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGH 205 (1202)
T ss_pred ceEEEEecCceEEEeeccCCccceEEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeeccc
Confidence 4788899999999999999999999999999999999975210 112344567
Q ss_pred ceEE--EEEEeCCCEEEEeeCCCeEEEEecCCCceeeeEeeeccccCeeEEEEecCCeeeecCCcceEEEEEeeCCcccc
Q 047325 286 KLAV--LCLAAAGKLVFSGSADKTICVWRRDGAIHTCLSVLTGHTGPVKCLAVEEDRDSSSSTSSCAQRWIVYSGSLDKS 363 (368)
Q Consensus 286 ~~~~--~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~w~l~sg~~D~~ 363 (368)
...| .+|+|.-.++++|++|..|++|.+...+.=.+-+..+|.+.|.++-|+|... ++.|.|+|++
T Consensus 206 DRGVNwaAfhpTlpliVSG~DDRqVKlWrmnetKaWEvDtcrgH~nnVssvlfhp~q~------------lIlSnsEDks 273 (1202)
T KOG0292|consen 206 DRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTCRGHYNNVSSVLFHPHQD------------LILSNSEDKS 273 (1202)
T ss_pred ccccceEEecCCcceEEecCCcceeeEEEeccccceeehhhhcccCCcceEEecCccc------------eeEecCCCcc
Confidence 6666 4566667899999999999999987654455667789999999999999887 7889999999
Q ss_pred cccC
Q 047325 364 DDDV 367 (368)
Q Consensus 364 v~i~ 367 (368)
||||
T Consensus 274 irVw 277 (1202)
T KOG0292|consen 274 IRVW 277 (1202)
T ss_pred EEEE
Confidence 9998
No 81
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1.5e-30 Score=197.64 Aligned_cols=259 Identities=16% Similarity=0.283 Sum_probs=201.9
Q ss_pred ceeeeccCcCCcEEEEEecCCEEEEccCCCcEEEEcCCc--ceecccCCCCCeeEEEEeC----CEEEEEeCCCeEEEEe
Q 047325 35 GLIGSLVREEGHIYSLAASKDLLYTGSDSKNIRVWKNLK--EFCGFKASSGLVKAIVISG----EKIFTGHQDGKIRVWK 108 (368)
Q Consensus 35 ~~~~~~~~h~~~i~~~~~~~~~l~s~~~dg~i~iw~~~~--~~~~~~~~~~~v~~~~~~~----~~l~s~~~dg~i~vw~ 108 (368)
..+..+..|.++|++++.++.++|+||.|-+|+|||+.+ ++..+..|.+.|+++.|.+ ..|++|+.||.|.+|+
T Consensus 34 ~~lF~~~aH~~sitavAVs~~~~aSGssDetI~IYDm~k~~qlg~ll~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~ 113 (362)
T KOG0294|consen 34 KPLFAFSAHAGSITALAVSGPYVASGSSDETIHIYDMRKRKQLGILLSHAGSITALKFYPPLSKSHLLSGSDDGHIIIWR 113 (362)
T ss_pred eccccccccccceeEEEecceeEeccCCCCcEEEEeccchhhhcceeccccceEEEEecCCcchhheeeecCCCcEEEEE
Confidence 335668899999999999999999999999999999875 4567889999999999983 2799999999999999
Q ss_pred ecCCCccccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcCCCCEEEEEeCCCcEEEEEccCCeE
Q 047325 109 ISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCGLLYTASWDRTFKVWRISDSKC 188 (368)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~ 188 (368)
...-.... .+.+|...|+.++++|.+++.++.+.|+.+++||+-+|+.
T Consensus 114 ~~~W~~~~--------------------------------slK~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr~ 161 (362)
T KOG0294|consen 114 VGSWELLK--------------------------------SLKAHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLVRGRV 161 (362)
T ss_pred cCCeEEee--------------------------------eecccccccceeEecCCCceEEEEcCCceeeeehhhcCcc
Confidence 87664322 2344999999999999999999999999999999999887
Q ss_pred EEEeecCCCceEEEEeCCCC-eEEEEcCCCeEEEEEcCCCCCCcccccceeeccccccEEEEEEcCCCCEEEEecCCCcE
Q 047325 189 LESVSAHDDAVNSVVSSSEG-LIFTGSADGTVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSSSRSIVYCGSSDGLV 267 (368)
Q Consensus 189 ~~~~~~~~~~v~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i 267 (368)
-..++-. .....+.|+|.| +++.+..+ .|-+|.+.... .... ...+..+.++.|. ++..|++|..|+.|
T Consensus 162 a~v~~L~-~~at~v~w~~~Gd~F~v~~~~-~i~i~q~d~A~------v~~~-i~~~~r~l~~~~l-~~~~L~vG~d~~~i 231 (362)
T KOG0294|consen 162 AFVLNLK-NKATLVSWSPQGDHFVVSGRN-KIDIYQLDNAS------VFRE-IENPKRILCATFL-DGSELLVGGDNEWI 231 (362)
T ss_pred ceeeccC-CcceeeEEcCCCCEEEEEecc-EEEEEecccHh------Hhhh-hhccccceeeeec-CCceEEEecCCceE
Confidence 6655532 223448999999 67776655 68899887542 1222 2222446666665 56789999999999
Q ss_pred EEEeCCCccccceeeeccceEEEEEEe----CCCEEEEeeCCCeEEEEecCCCce---eeeEeeeccccCeeEEEEe
Q 047325 268 NFWEREKQLSHGGVLKGHKLAVLCLAA----AGKLVFSGSADKTICVWRRDGAIH---TCLSVLTGHTGPVKCLAVE 337 (368)
Q Consensus 268 ~i~d~~~~~~~~~~~~~~~~~~~~~~~----~~~~l~~~~~dg~i~iw~~~~~~~---~~~~~~~~h~~~v~~l~~~ 337 (368)
.+||.... .+...+.+|..+|-.+.+ ++.+|++++.||.|+|||++.... ..+..+.. ...++|+...
T Consensus 232 ~~~D~ds~-~~~~~~~AH~~RVK~i~~~~~~~~~~lvTaSSDG~I~vWd~~~~~k~~~~~l~e~n~-~~RltCl~~~ 306 (362)
T KOG0294|consen 232 SLKDTDSD-TPLTEFLAHENRVKDIASYTNPEHEYLVTASSDGFIKVWDIDMETKKRPTLLAELNT-NVRLTCLRVK 306 (362)
T ss_pred EEeccCCC-ccceeeecchhheeeeEEEecCCceEEEEeccCceEEEEEccccccCCcceeEEeec-CCccceeeeh
Confidence 99999874 444788899999988774 467999999999999999976422 23333332 5567777654
No 82
>PTZ00421 coronin; Provisional
Probab=100.00 E-value=7.4e-30 Score=219.53 Aligned_cols=203 Identities=20% Similarity=0.299 Sum_probs=163.6
Q ss_pred eccCcCCcEEEEEecC---CEEEEccCCCcEEEEcCCc---------ceecccCCCCCeeEEEEe---CCEEEEEeCCCe
Q 047325 39 SLVREEGHIYSLAASK---DLLYTGSDSKNIRVWKNLK---------EFCGFKASSGLVKAIVIS---GEKIFTGHQDGK 103 (368)
Q Consensus 39 ~~~~h~~~i~~~~~~~---~~l~s~~~dg~i~iw~~~~---------~~~~~~~~~~~v~~~~~~---~~~l~s~~~dg~ 103 (368)
.+.+|.+.|++++|++ ++|++|+.|++|++||+.. .+..+.+|...|.+++|+ +++|++|+.|++
T Consensus 70 ~l~GH~~~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~Dgt 149 (493)
T PTZ00421 70 ILLGQEGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMV 149 (493)
T ss_pred eEeCCCCCEEEEEEcCCCCCEEEEEeCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCE
Confidence 3789999999999986 3899999999999999853 245678999999999998 368999999999
Q ss_pred EEEEeecCCCccccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcCCCCEEEEEeCCCcEEEEEc
Q 047325 104 IRVWKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCGLLYTASWDRTFKVWRI 183 (368)
Q Consensus 104 i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~ 183 (368)
|++||+++++... .+.+|...|.+++|+|++.+|++++.|+.|++||+
T Consensus 150 VrIWDl~tg~~~~--------------------------------~l~~h~~~V~sla~spdG~lLatgs~Dg~IrIwD~ 197 (493)
T PTZ00421 150 VNVWDVERGKAVE--------------------------------VIKCHSDQITSLEWNLDGSLLCTTSKDKKLNIIDP 197 (493)
T ss_pred EEEEECCCCeEEE--------------------------------EEcCCCCceEEEEEECCCCEEEEecCCCEEEEEEC
Confidence 9999998765322 22348899999999999999999999999999999
Q ss_pred cCCeEEEEeecCCCc-eEEEEeCCCC-eEEEEc----CCCeEEEEEcCCCCCCcccccceeec-cccccEEEEEEcCCCC
Q 047325 184 SDSKCLESVSAHDDA-VNSVVSSSEG-LIFTGS----ADGTVKVWKREQHGKGTKHSLAQTLL-KQECAVTALVVSSSRS 256 (368)
Q Consensus 184 ~~~~~~~~~~~~~~~-v~~~~~~~~~-~l~~~~----~dg~i~i~d~~~~~~~~~~~~~~~~~-~~~~~i~~~~~~~~~~ 256 (368)
++++.+..+.+|.+. ...+.|.+++ .+++++ .|+.|++||++.... +..... .....+....|+++++
T Consensus 198 rsg~~v~tl~~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~~-----p~~~~~~d~~~~~~~~~~d~d~~ 272 (493)
T PTZ00421 198 RDGTIVSSVEAHASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMAS-----PYSTVDLDQSSALFIPFFDEDTN 272 (493)
T ss_pred CCCcEEEEEecCCCCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCCC-----ceeEeccCCCCceEEEEEcCCCC
Confidence 999999999888765 3456788776 665543 479999999986532 222222 2334566678999999
Q ss_pred EEEEec-CCCcEEEEeCCCcccc
Q 047325 257 IVYCGS-SDGLVNFWEREKQLSH 278 (368)
Q Consensus 257 ~l~~~~-~dg~i~i~d~~~~~~~ 278 (368)
+|++++ .|+.|++||++++...
T Consensus 273 ~L~lggkgDg~Iriwdl~~~~~~ 295 (493)
T PTZ00421 273 LLYIGSKGEGNIRCFELMNERLT 295 (493)
T ss_pred EEEEEEeCCCeEEEEEeeCCceE
Confidence 999887 5999999999976544
No 83
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.98 E-value=8.6e-31 Score=208.27 Aligned_cols=246 Identities=20% Similarity=0.264 Sum_probs=202.7
Q ss_pred eccCcCCcEEEEEec---CCEEEEccCCCcEEEEcCCcc------------eecccCCCCCeeEEEEe---CCEEEEEeC
Q 047325 39 SLVREEGHIYSLAAS---KDLLYTGSDSKNIRVWKNLKE------------FCGFKASSGLVKAIVIS---GEKIFTGHQ 100 (368)
Q Consensus 39 ~~~~h~~~i~~~~~~---~~~l~s~~~dg~i~iw~~~~~------------~~~~~~~~~~v~~~~~~---~~~l~s~~~ 100 (368)
....|.+.|+.+.+- +.++|+++..+.|.|||..+. ...+.+|...-++++|+ ...|++++.
T Consensus 119 ~~i~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~~~ 198 (422)
T KOG0264|consen 119 QKINHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEGTLLSGSD 198 (422)
T ss_pred EeccCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccceeEeeccC
Confidence 345789999988875 449999999999999996521 22577898888889998 568999999
Q ss_pred CCeEEEEeecCCCccccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcC-CCCEEEEEeCCCcEE
Q 047325 101 DGKIRVWKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQ-DCGLLYTASWDRTFK 179 (368)
Q Consensus 101 dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~ 179 (368)
|++|++||+......... ......+.+|...|..++|++ +..+|++++.|+.+.
T Consensus 199 d~~i~lwdi~~~~~~~~~-------------------------~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~ 253 (422)
T KOG0264|consen 199 DHTICLWDINAESKEDKV-------------------------VDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLM 253 (422)
T ss_pred CCcEEEEeccccccCCcc-------------------------ccceEEeecCCcceehhhccccchhhheeecCCCeEE
Confidence 999999999876532110 113455677999999999999 566899999999999
Q ss_pred EEEcc--CCeEEEEeecCCCceEEEEeCCCC--eEEEEcCCCeEEEEEcCCCCCCcccccceeeccccccEEEEEEcCC-
Q 047325 180 VWRIS--DSKCLESVSAHDDAVNSVVSSSEG--LIFTGSADGTVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSSS- 254 (368)
Q Consensus 180 iwd~~--~~~~~~~~~~~~~~v~~~~~~~~~--~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~- 254 (368)
|||++ +.++.....+|.+.|.|++|+|-+ .||+|+.|++|.+||+|.... ++..+.+|+..|..+.|+|+
T Consensus 254 iwD~R~~~~~~~~~~~ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~-----~lh~~e~H~dev~~V~WSPh~ 328 (422)
T KOG0264|consen 254 IWDTRSNTSKPSHSVKAHSAEVNCVAFNPFNEFILATGSADKTVALWDLRNLNK-----PLHTFEGHEDEVFQVEWSPHN 328 (422)
T ss_pred EEEcCCCCCCCcccccccCCceeEEEeCCCCCceEEeccCCCcEEEeechhccc-----CceeccCCCcceEEEEeCCCC
Confidence 99999 567778888999999999999987 999999999999999997654 77889999999999999995
Q ss_pred CCEEEEecCCCcEEEEeCCCcc-------------ccceeeeccceEEEEEEeC---CCEEEEeeCCCeEEEEecC
Q 047325 255 RSIVYCGSSDGLVNFWEREKQL-------------SHGGVLKGHKLAVLCLAAA---GKLVFSGSADKTICVWRRD 314 (368)
Q Consensus 255 ~~~l~~~~~dg~i~i~d~~~~~-------------~~~~~~~~~~~~~~~~~~~---~~~l~~~~~dg~i~iw~~~ 314 (368)
...|++++.|+.+.+||+..-. .+...-.+|...|..|+++ .-.|++.+.|+.+.||++.
T Consensus 329 etvLASSg~D~rl~vWDls~ig~eq~~eda~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s 404 (422)
T KOG0264|consen 329 ETVLASSGTDRRLNVWDLSRIGEEQSPEDAEDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQMA 404 (422)
T ss_pred CceeEecccCCcEEEEeccccccccChhhhccCCcceeEEecCcccccccccCCCCCCeEEEEecCCceEEEeecc
Confidence 4588999999999999986321 1224556899999888875 4578999999999999775
No 84
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.98 E-value=9.5e-30 Score=192.82 Aligned_cols=264 Identities=16% Similarity=0.238 Sum_probs=207.2
Q ss_pred CCcEEEEEecCC--EEEEccCCCcEEEEcCCcc-eecccCCCCCeeEEEEe-CCEEEEEeCCCeEEEEeecCCCcccccc
Q 047325 44 EGHIYSLAASKD--LLYTGSDSKNIRVWKNLKE-FCGFKASSGLVKAIVIS-GEKIFTGHQDGKIRVWKISPKNQSVHKR 119 (368)
Q Consensus 44 ~~~i~~~~~~~~--~l~s~~~dg~i~iw~~~~~-~~~~~~~~~~v~~~~~~-~~~l~s~~~dg~i~vw~~~~~~~~~~~~ 119 (368)
++.|.++.|++. .|+.++.||++++||.... +...-.|..++.+++|. ...+++|+.||.|+.+|+++++.....
T Consensus 13 ~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~l~~~~~~~~plL~c~F~d~~~~~~G~~dg~vr~~Dln~~~~~~ig- 91 (323)
T KOG1036|consen 13 EDGISSVKFSPSSSDLLVSSWDGSLRLYDVPANSLKLKFKHGAPLLDCAFADESTIVTGGLDGQVRRYDLNTGNEDQIG- 91 (323)
T ss_pred hhceeeEEEcCcCCcEEEEeccCcEEEEeccchhhhhheecCCceeeeeccCCceEEEeccCceEEEEEecCCcceeec-
Confidence 567999999843 7777889999999998754 33445689999999998 678999999999999999988643222
Q ss_pred CCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcCCCCEEEEEeCCCcEEEEEccCCeEEEEeecCCCce
Q 047325 120 AGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCGLLYTASWDRTFKVWRISDSKCLESVSAHDDAV 199 (368)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v 199 (368)
.|..+|.|+.+.+....+++|+.|++|++||.+.......+.. ...|
T Consensus 92 --------------------------------th~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~~~~~~d~-~kkV 138 (323)
T KOG1036|consen 92 --------------------------------THDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKVVVGTFDQ-GKKV 138 (323)
T ss_pred --------------------------------cCCCceEEEEeeccCCeEEEcccCccEEEEecccccccccccc-CceE
Confidence 2999999999999888999999999999999998666666653 3478
Q ss_pred EEEEeCCCCeEEEEcCCCeEEEEEcCCCCCCcccccceeeccccccEEEEEEcCCCCEEEEecCCCcEEEEeCCCc---c
Q 047325 200 NSVVSSSEGLIFTGSADGTVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSSSRSIVYCGSSDGLVNFWEREKQ---L 276 (368)
Q Consensus 200 ~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~---~ 276 (368)
.++....+ .|++|+.|..+.+||+|.... .........+..++++++-|++.-.++++-||+|.+=.++.. .
T Consensus 139 y~~~v~g~-~LvVg~~~r~v~iyDLRn~~~----~~q~reS~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~ 213 (323)
T KOG1036|consen 139 YCMDVSGN-RLVVGTSDRKVLIYDLRNLDE----PFQRRESSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQ 213 (323)
T ss_pred EEEeccCC-EEEEeecCceEEEEEcccccc----hhhhccccceeEEEEEEEecCCCceEEEeecceEEEEccCCchHHh
Confidence 88877543 888999999999999997644 122223345667999999998888999999999988555433 1
Q ss_pred ccceeeeccc-----------eEEEEEEeCCCEEEEeeCCCeEEEEecCCCceeeeEeeeccccCeeEEEEecCCeeeec
Q 047325 277 SHGGVLKGHK-----------LAVLCLAAAGKLVFSGSADKTICVWRRDGAIHTCLSVLTGHTGPVKCLAVEEDRDSSSS 345 (368)
Q Consensus 277 ~~~~~~~~~~-----------~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~ 345 (368)
.....++.|. ...++|+|-.+.++||+.||.|.+||+.+. +.+..+......|.+++|+.+|..||.
T Consensus 214 skkyaFkCHr~~~~~~~~~yPVNai~Fhp~~~tfaTgGsDG~V~~Wd~~~r--Krl~q~~~~~~SI~slsfs~dG~~LAi 291 (323)
T KOG1036|consen 214 SKKYAFKCHRLSEKDTEIIYPVNAIAFHPIHGTFATGGSDGIVNIWDLFNR--KRLKQLAKYETSISSLSFSMDGSLLAI 291 (323)
T ss_pred hhceeEEeeecccCCceEEEEeceeEeccccceEEecCCCceEEEccCcch--hhhhhccCCCCceEEEEeccCCCeEEE
Confidence 1222333332 333667777889999999999999988776 667778777788999999999998886
Q ss_pred CCc
Q 047325 346 TSS 348 (368)
Q Consensus 346 ~~~ 348 (368)
++.
T Consensus 292 a~s 294 (323)
T KOG1036|consen 292 ASS 294 (323)
T ss_pred Eec
Confidence 653
No 85
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.98 E-value=3.3e-30 Score=214.03 Aligned_cols=237 Identities=20% Similarity=0.297 Sum_probs=201.3
Q ss_pred cCcCCcEEEEEec--CCEEEEccCCCcEEEEcCC--cceecccC-CCCCeeEEEEeCCEEEEEeCCCeEEEEeecCCCcc
Q 047325 41 VREEGHIYSLAAS--KDLLYTGSDSKNIRVWKNL--KEFCGFKA-SSGLVKAIVISGEKIFTGHQDGKIRVWKISPKNQS 115 (368)
Q Consensus 41 ~~h~~~i~~~~~~--~~~l~s~~~dg~i~iw~~~--~~~~~~~~-~~~~v~~~~~~~~~l~s~~~dg~i~vw~~~~~~~~ 115 (368)
..+.+.|+++.|+ |.+|++|..+|.|.|||.. +....+.+ |...|-+++|++..+.+|+.||.|..+|++..+..
T Consensus 214 ~~~~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k~~~~~~~~h~~rvg~laW~~~~lssGsr~~~I~~~dvR~~~~~ 293 (484)
T KOG0305|consen 214 SFGEELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQKKTRTLRGSHASRVGSLAWNSSVLSSGSRDGKILNHDVRISQHV 293 (484)
T ss_pred ecCCCceEEEEECCCCCEEEEeecCCeEEEEehhhccccccccCCcCceeEEEeccCceEEEecCCCcEEEEEEecchhh
Confidence 3347889999997 5599999999999999976 44566777 99999999999999999999999999999987654
Q ss_pred ccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcCCCCEEEEEeCCCcEEEEEccCCeEEEEeecC
Q 047325 116 VHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCGLLYTASWDRTFKVWRISDSKCLESVSAH 195 (368)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~ 195 (368)
... +.+|...|..++|++|+.++++|+.|+.+.|||....+++..+..|
T Consensus 294 ~~~-------------------------------~~~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~~~~p~~~~~~H 342 (484)
T KOG0305|consen 294 VST-------------------------------LQGHRQEVCGLKWSPDGNQLASGGNDNVVFIWDGLSPEPKFTFTEH 342 (484)
T ss_pred hhh-------------------------------hhcccceeeeeEECCCCCeeccCCCccceEeccCCCccccEEEecc
Confidence 331 3349999999999999999999999999999999999999999999
Q ss_pred CCceEEEEeCCCC--eEEEEc--CCCeEEEEEcCCCCCCcccccceeeccccccEEEEEEcCCCCEEEE--ecCCCcEEE
Q 047325 196 DDAVNSVVSSSEG--LIFTGS--ADGTVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSSSRSIVYC--GSSDGLVNF 269 (368)
Q Consensus 196 ~~~v~~~~~~~~~--~l~~~~--~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~--~~~dg~i~i 269 (368)
..+|.+++|+|-. .||+|+ .|+.|++||...+. .+ ........|..+.|++..+.|++ |..++.|.|
T Consensus 343 ~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~------~i-~~vdtgsQVcsL~Wsk~~kEi~sthG~s~n~i~l 415 (484)
T KOG0305|consen 343 TAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTGA------RI-DSVDTGSQVCSLIWSKKYKELLSTHGYSENQITL 415 (484)
T ss_pred ceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCCc------Ee-cccccCCceeeEEEcCCCCEEEEecCCCCCcEEE
Confidence 9999999999975 888875 49999999998662 22 22345567999999999887776 456778999
Q ss_pred EeCCCccccceeeeccceEEEE--EEeCCCEEEEeeCCCeEEEEecCCC
Q 047325 270 WEREKQLSHGGVLKGHKLAVLC--LAAAGKLVFSGSADKTICVWRRDGA 316 (368)
Q Consensus 270 ~d~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~~~~~dg~i~iw~~~~~ 316 (368)
|+..+... ...+.+|...|+. ++|||..+++|+.|.++++|++-..
T Consensus 416 w~~ps~~~-~~~l~gH~~RVl~la~SPdg~~i~t~a~DETlrfw~~f~~ 463 (484)
T KOG0305|consen 416 WKYPSMKL-VAELLGHTSRVLYLALSPDGETIVTGAADETLRFWNLFDE 463 (484)
T ss_pred Eeccccce-eeeecCCcceeEEEEECCCCCEEEEecccCcEEeccccCC
Confidence 99998544 4788899999954 5689999999999999999987553
No 86
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.98 E-value=1.5e-29 Score=190.80 Aligned_cols=283 Identities=15% Similarity=0.230 Sum_probs=217.4
Q ss_pred eeccCcCCcEEEEEec---CCEEEEccCCCcEEEEcCCcc------------ee-----cccCCCCCeeEEEEe---CCE
Q 047325 38 GSLVREEGHIYSLAAS---KDLLYTGSDSKNIRVWKNLKE------------FC-----GFKASSGLVKAIVIS---GEK 94 (368)
Q Consensus 38 ~~~~~h~~~i~~~~~~---~~~l~s~~~dg~i~iw~~~~~------------~~-----~~~~~~~~v~~~~~~---~~~ 94 (368)
.....|.+.|+++..+ +.++++|+.||.|.+||++.. .+ .-.+|.-.|..+.|- ...
T Consensus 37 d~~r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGm 116 (397)
T KOG4283|consen 37 DFVRPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGM 116 (397)
T ss_pred ceeccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCce
Confidence 3456789999999987 559999999999999997531 11 124678889988886 668
Q ss_pred EEEEeCCCeEEEEeecCCCccccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcC---CCCEEEE
Q 047325 95 IFTGHQDGKIRVWKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQ---DCGLLYT 171 (368)
Q Consensus 95 l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~---~~~~l~~ 171 (368)
+.+++.|.+++|||.++.+....+. ..+.|.+-+++| ..-++++
T Consensus 117 FtssSFDhtlKVWDtnTlQ~a~~F~---------------------------------me~~VYshamSp~a~sHcLiA~ 163 (397)
T KOG4283|consen 117 FTSSSFDHTLKVWDTNTLQEAVDFK---------------------------------MEGKVYSHAMSPMAMSHCLIAA 163 (397)
T ss_pred eecccccceEEEeecccceeeEEee---------------------------------cCceeehhhcChhhhcceEEEE
Confidence 8999999999999999887544433 446677777777 2347888
Q ss_pred EeCCCcEEEEEccCCeEEEEeecCCCceEEEEeCCCC--eEEEEcCCCeEEEEEcCCCCC---------Ccccccceeec
Q 047325 172 ASWDRTFKVWRISDSKCLESVSAHDDAVNSVVSSSEG--LIFTGSADGTVKVWKREQHGK---------GTKHSLAQTLL 240 (368)
Q Consensus 172 ~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~--~l~~~~~dg~i~i~d~~~~~~---------~~~~~~~~~~~ 240 (368)
|..|-.|++-|+.+|...+.+.+|.+.|.++.|+|.. .|++|+.||.|++||+|.... ....+..+...
T Consensus 164 gtr~~~VrLCDi~SGs~sH~LsGHr~~vlaV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ 243 (397)
T KOG4283|consen 164 GTRDVQVRLCDIASGSFSHTLSGHRDGVLAVEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNT 243 (397)
T ss_pred ecCCCcEEEEeccCCcceeeeccccCceEEEEeccCceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccc
Confidence 8889999999999999999999999999999999988 899999999999999985421 12223334456
Q ss_pred cccccEEEEEEcCCCCEEEEecCCCcEEEEeCCCccccceeee--ccceEE---EEE-EeCCCEEEEeeCCCeEEEEecC
Q 047325 241 KQECAVTALVVSSSRSIVYCGSSDGLVNFWEREKQLSHGGVLK--GHKLAV---LCL-AAAGKLVFSGSADKTICVWRRD 314 (368)
Q Consensus 241 ~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~--~~~~~~---~~~-~~~~~~l~~~~~dg~i~iw~~~ 314 (368)
.|.+.+..++|..++.++++.+.|..+++|+..++......+. .|.... ..+ +.+...++---.++.+.++++-
T Consensus 244 ah~gkvngla~tSd~~~l~~~gtd~r~r~wn~~~G~ntl~~~g~~~~n~~~~~~~~~~~~~s~vfv~~p~~~~lall~~~ 323 (397)
T KOG4283|consen 244 AHYGKVNGLAWTSDARYLASCGTDDRIRVWNMESGRNTLREFGPIIHNQTTSFAVHIQSMDSDVFVLFPNDGSLALLNLL 323 (397)
T ss_pred cccceeeeeeecccchhhhhccCccceEEeecccCcccccccccccccccccceEEEeecccceEEEEecCCeEEEEEcc
Confidence 7889999999999999999999999999999886643322211 111111 111 2234444444456889999876
Q ss_pred CCceeeeEeeeccccCeeEEEEecCCeeeecCCcceEEEEEeeCCcccccccC
Q 047325 315 GAIHTCLSVLTGHTGPVKCLAVEEDRDSSSSTSSCAQRWIVYSGSLDKSDDDV 367 (368)
Q Consensus 315 ~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~w~l~sg~~D~~v~i~ 367 (368)
.+ ..+..+..|...|.+.++-|+-+ ..++|+.|+.|..|
T Consensus 324 sg--s~ir~l~~h~k~i~c~~~~~~fq------------~~~tg~~d~ni~~w 362 (397)
T KOG4283|consen 324 EG--SFVRRLSTHLKRINCAAYRPDFE------------QCFTGDMNGNIYMW 362 (397)
T ss_pred Cc--eEEEeeecccceeeEEeecCchh------------hhhccccCCccccc
Confidence 66 77888999988999999999988 67788888887766
No 87
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.97 E-value=5.1e-30 Score=203.88 Aligned_cols=251 Identities=18% Similarity=0.245 Sum_probs=203.2
Q ss_pred CCCCCeeEEEEe---CCEEEEEeCCCeEEEEeecCCCccccccCCccccceeeeeccCCCCceeEecccceeeeeecCCC
Q 047325 80 ASSGLVKAIVIS---GEKIFTGHQDGKIRVWKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDA 156 (368)
Q Consensus 80 ~~~~~v~~~~~~---~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (368)
.|.+.|+.+.+- ...+++.+..+.+.|||.....-...... ...+...+.+|.+.
T Consensus 122 ~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~----------------------~~~Pdl~L~gH~~e 179 (422)
T KOG0264|consen 122 NHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASG----------------------ECRPDLRLKGHEKE 179 (422)
T ss_pred cCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccc----------------------cCCCceEEEeeccc
Confidence 467777777665 56888899999999999876543222111 11223456779888
Q ss_pred EeEEEEcCC-CCEEEEEeCCCcEEEEEccCC-------eEEEEeecCCCceEEEEeCCCC--eEEEEcCCCeEEEEEcCC
Q 047325 157 VSCMSLDQD-CGLLYTASWDRTFKVWRISDS-------KCLESVSAHDDAVNSVVSSSEG--LIFTGSADGTVKVWKREQ 226 (368)
Q Consensus 157 v~~~~~~~~-~~~l~~~~~d~~i~iwd~~~~-------~~~~~~~~~~~~v~~~~~~~~~--~l~~~~~dg~i~i~d~~~ 226 (368)
-.++.|++. ...+++++.|+.|++||+... .+...+.+|...|..++|++.. .+++++.|+.+.|||+|.
T Consensus 180 g~glsWn~~~~g~Lls~~~d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~ 259 (422)
T KOG0264|consen 180 GYGLSWNRQQEGTLLSGSDDHTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRS 259 (422)
T ss_pred ccccccccccceeEeeccCCCcEEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCC
Confidence 889999984 448999999999999999653 2456788999999999999977 899999999999999996
Q ss_pred CCCCcccccceeeccccccEEEEEEcC-CCCEEEEecCCCcEEEEeCCCccccceeeeccceEEEEEEeC---CCEEEEe
Q 047325 227 HGKGTKHSLAQTLLKQECAVTALVVSS-SRSIVYCGSSDGLVNFWEREKQLSHGGVLKGHKLAVLCLAAA---GKLVFSG 302 (368)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~---~~~l~~~ 302 (368)
. ..++......|.+.+.|++|+| ++..||+|+.|++|.+||+|+.......+.+|...|..+.+. ...|+++
T Consensus 260 ~----~~~~~~~~~ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSPh~etvLASS 335 (422)
T KOG0264|consen 260 N----TSKPSHSVKAHSAEVNCVAFNPFNEFILATGSADKTVALWDLRNLNKPLHTFEGHEDEVFQVEWSPHNETVLASS 335 (422)
T ss_pred C----CCCCcccccccCCceeEEEeCCCCCceEEeccCCCcEEEeechhcccCceeccCCCcceEEEEeCCCCCceeEec
Confidence 3 1245667788999999999999 667899999999999999999888888999999999777653 6789999
Q ss_pred eCCCeEEEEecCCC------------ceeeeEeeeccccCeeEEEEecCCeeeecCCcceEEEEEeeCCcccccccC
Q 047325 303 SADKTICVWRRDGA------------IHTCLSVLTGHTGPVKCLAVEEDRDSSSSTSSCAQRWIVYSGSLDKSDDDV 367 (368)
Q Consensus 303 ~~dg~i~iw~~~~~------------~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~w~l~sg~~D~~v~i~ 367 (368)
+.|+.+.|||+..- ..++++.-.||...|.++.|+|... |.++|.++|+.+.||
T Consensus 336 g~D~rl~vWDls~ig~eq~~eda~dgppEllF~HgGH~~kV~DfsWnp~eP-----------W~I~SvaeDN~LqIW 401 (422)
T KOG0264|consen 336 GTDRRLNVWDLSRIGEEQSPEDAEDGPPELLFIHGGHTAKVSDFSWNPNEP-----------WTIASVAEDNILQIW 401 (422)
T ss_pred ccCCcEEEEeccccccccChhhhccCCcceeEEecCcccccccccCCCCCC-----------eEEEEecCCceEEEe
Confidence 99999999998532 2345677789999999999999999 688888888888887
No 88
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.97 E-value=2.3e-29 Score=200.40 Aligned_cols=281 Identities=22% Similarity=0.338 Sum_probs=223.0
Q ss_pred eeeccCcCCcEEEEEecCC--EEEEccCCCcEEEEcCCcce-------------------ecc-cCCCCCeeEEEEe--C
Q 047325 37 IGSLVREEGHIYSLAASKD--LLYTGSDSKNIRVWKNLKEF-------------------CGF-KASSGLVKAIVIS--G 92 (368)
Q Consensus 37 ~~~~~~h~~~i~~~~~~~~--~l~s~~~dg~i~iw~~~~~~-------------------~~~-~~~~~~v~~~~~~--~ 92 (368)
+..+..|.-+|.+++++++ +.++++.||+|.-|++..+. ... +.|...+.+++.+ +
T Consensus 135 ~~~~~~H~~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~Dg 214 (479)
T KOG0299|consen 135 FRVIGKHQLSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSDG 214 (479)
T ss_pred ceeeccccCcceEEEeeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCCC
Confidence 5667889999999999877 99999999999999864221 011 3788889999988 8
Q ss_pred CEEEEEeCCCeEEEEeecCCCccccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcCCCCEEEEE
Q 047325 93 EKIFTGHQDGKIRVWKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCGLLYTA 172 (368)
Q Consensus 93 ~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~ 172 (368)
.||++|+.|..|.||+.++.+.... +.+|.+.|.+++|-.....++++
T Consensus 215 kylatgg~d~~v~Iw~~~t~ehv~~--------------------------------~~ghr~~V~~L~fr~gt~~lys~ 262 (479)
T KOG0299|consen 215 KYLATGGRDRHVQIWDCDTLEHVKV--------------------------------FKGHRGAVSSLAFRKGTSELYSA 262 (479)
T ss_pred cEEEecCCCceEEEecCcccchhhc--------------------------------ccccccceeeeeeecCccceeee
Confidence 8999999999999999998874333 44599999999999988899999
Q ss_pred eCCCcEEEEEccCCeEEEEeecCCCceEEEEeCCCC-eEEEEcCCCeEEEEEcCCCCCCcccccceeeccccccEEEEEE
Q 047325 173 SWDRTFKVWRISDSKCLESVSAHDDAVNSVVSSSEG-LIFTGSADGTVKVWKREQHGKGTKHSLAQTLLKQECAVTALVV 251 (368)
Q Consensus 173 ~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 251 (368)
+.|+.|++|++.....+.++.+|...|..+....-+ .+-+|+.|+++++|++... ....+.++.+.+.|++|
T Consensus 263 s~Drsvkvw~~~~~s~vetlyGHqd~v~~IdaL~reR~vtVGgrDrT~rlwKi~ee-------sqlifrg~~~sidcv~~ 335 (479)
T KOG0299|consen 263 SADRSVKVWSIDQLSYVETLYGHQDGVLGIDALSRERCVTVGGRDRTVRLWKIPEE-------SQLIFRGGEGSIDCVAF 335 (479)
T ss_pred ecCCceEEEehhHhHHHHHHhCCccceeeechhcccceEEeccccceeEEEecccc-------ceeeeeCCCCCeeeEEE
Confidence 999999999999999999999999999999877777 5555669999999999543 23456678889999999
Q ss_pred cCCCCEEEEecCCCcEEEEeCCCccccceeeeccc-----------eEEE--EEEeCCCEEEEeeCCCeEEEEecCCC--
Q 047325 252 SSSRSIVYCGSSDGLVNFWEREKQLSHGGVLKGHK-----------LAVL--CLAAAGKLVFSGSADKTICVWRRDGA-- 316 (368)
Q Consensus 252 ~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~-----------~~~~--~~~~~~~~l~~~~~dg~i~iw~~~~~-- 316 (368)
-. ...+++|+.+|.|.+|++.+.+.+......|. ..+. ++.+..+++++|+.+|.|++|.+..+
T Consensus 336 In-~~HfvsGSdnG~IaLWs~~KKkplf~~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g~r 414 (479)
T KOG0299|consen 336 IN-DEHFVSGSDNGSIALWSLLKKKPLFTSRLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDGLR 414 (479)
T ss_pred ec-ccceeeccCCceEEEeeecccCceeEeeccccccCCccccccccceeeeEecccCceEEecCCCCceEEEEecCCcc
Confidence 85 46899999999999999987665544433332 1444 44468899999999999999998765
Q ss_pred ceeeeEeeeccccCeeEEEEecCCeeeecCCcc----eEEEEEeeC
Q 047325 317 IHTCLSVLTGHTGPVKCLAVEEDRDSSSSTSSC----AQRWIVYSG 358 (368)
Q Consensus 317 ~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~----~~~w~l~sg 358 (368)
...++..+. -.+-|++|+|+++|..+..+-+. ++-|.+.++
T Consensus 415 ~i~~l~~ls-~~GfVNsl~f~~sgk~ivagiGkEhRlGRW~~~k~~ 459 (479)
T KOG0299|consen 415 AINLLYSLS-LVGFVNSLAFSNSGKRIVAGIGKEHRLGRWWCLKSG 459 (479)
T ss_pred ccceeeecc-cccEEEEEEEccCCCEEEEecccccccceeeEeecc
Confidence 344555554 66789999999999966555432 344444444
No 89
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=2.7e-30 Score=189.47 Aligned_cols=241 Identities=22% Similarity=0.298 Sum_probs=191.0
Q ss_pred ccCcCCcEEEEE--ecCCEEEEccCCCcEEEEcCCc-----ceecccCCCCCeeEEEEe----CCEEEEEeCCCeEEEEe
Q 047325 40 LVREEGHIYSLA--ASKDLLYTGSDSKNIRVWKNLK-----EFCGFKASSGLVKAIVIS----GEKIFTGHQDGKIRVWK 108 (368)
Q Consensus 40 ~~~h~~~i~~~~--~~~~~l~s~~~dg~i~iw~~~~-----~~~~~~~~~~~v~~~~~~----~~~l~s~~~dg~i~vw~ 108 (368)
-..|++.|.... |.|.+|||++.|++|+|+.+.. .+.++.+|.++|..++|. |.+|++++.||.|.||.
T Consensus 7 dt~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiWk 86 (299)
T KOG1332|consen 7 DTQHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIWK 86 (299)
T ss_pred hhhhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEEEe
Confidence 457888888754 6699999999999999998753 356789999999999997 88999999999999999
Q ss_pred ecCCCccccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcCC--CCEEEEEeCCCcEEEEEccCC
Q 047325 109 ISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQD--CGLLYTASWDRTFKVWRISDS 186 (368)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~d~~i~iwd~~~~ 186 (368)
-++++-..... +..|...|++++|.|. |-.|++++.||.|.+.+.+..
T Consensus 87 e~~g~w~k~~e------------------------------~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~ 136 (299)
T KOG1332|consen 87 EENGRWTKAYE------------------------------HAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSS 136 (299)
T ss_pred cCCCchhhhhh------------------------------hhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCC
Confidence 88874322221 2239999999999985 568999999999999998754
Q ss_pred ---eEEEEeecCCCceEEEEeCCC---C------------eEEEEcCCCeEEEEEcCCCCCCcccccceeeccccccEEE
Q 047325 187 ---KCLESVSAHDDAVNSVVSSSE---G------------LIFTGSADGTVKVWKREQHGKGTKHSLAQTLLKQECAVTA 248 (368)
Q Consensus 187 ---~~~~~~~~~~~~v~~~~~~~~---~------------~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~i~~ 248 (368)
........|...|++++|.|. | .|++|+.|..|+||+.... .......+.+|.+.|+.
T Consensus 137 g~w~t~ki~~aH~~GvnsVswapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~----~w~~e~~l~~H~dwVRD 212 (299)
T KOG1332|consen 137 GGWTTSKIVFAHEIGVNSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSD----SWKLERTLEGHKDWVRD 212 (299)
T ss_pred CCccchhhhhccccccceeeecCcCCCccccccCcccccceeeccCCccceeeeecCCc----chhhhhhhhhcchhhhh
Confidence 233455679999999999875 1 5999999999999999864 33455668899999999
Q ss_pred EEEcCCC----CEEEEecCCCcEEEEeCCCccccc--eeeeccc--eEEEEEEeCCCEEEEeeCCCeEEEEecC
Q 047325 249 LVVSSSR----SIVYCGSSDGLVNFWEREKQLSHG--GVLKGHK--LAVLCLAAAGKLVFSGSADKTICVWRRD 314 (368)
Q Consensus 249 ~~~~~~~----~~l~~~~~dg~i~i~d~~~~~~~~--~~~~~~~--~~~~~~~~~~~~l~~~~~dg~i~iw~~~ 314 (368)
++|.|.- .++++++.||++.||..+...... ..+...+ ....++++.|++|+.++.|+.|.+|.-+
T Consensus 213 VAwaP~~gl~~s~iAS~SqDg~viIwt~~~e~e~wk~tll~~f~~~~w~vSWS~sGn~LaVs~GdNkvtlwke~ 286 (299)
T KOG1332|consen 213 VAWAPSVGLPKSTIASCSQDGTVIIWTKDEEYEPWKKTLLEEFPDVVWRVSWSLSGNILAVSGGDNKVTLWKEN 286 (299)
T ss_pred hhhccccCCCceeeEEecCCCcEEEEEecCccCcccccccccCCcceEEEEEeccccEEEEecCCcEEEEEEeC
Confidence 9999953 489999999999999876332221 2222223 3336677789999999999999999643
No 90
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=1.9e-30 Score=214.96 Aligned_cols=248 Identities=22% Similarity=0.407 Sum_probs=198.6
Q ss_pred CCEEEEccCCCcEEEEcCCcc--------eecccCCCCCeeEEEEe--CCEEEEEeCCCeEEEEeecCCCccccccCCcc
Q 047325 54 KDLLYTGSDSKNIRVWKNLKE--------FCGFKASSGLVKAIVIS--GEKIFTGHQDGKIRVWKISPKNQSVHKRAGTL 123 (368)
Q Consensus 54 ~~~l~s~~~dg~i~iw~~~~~--------~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~ 123 (368)
+++|+|||.||.|++|++... ...++.|...|+.+... ++.|++++.|-+|++|+...+.....
T Consensus 37 ~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~~~tlIS~SsDtTVK~W~~~~~~~~c~------ 110 (735)
T KOG0308|consen 37 GRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGNGKTLISASSDTTVKVWNAHKDNTFCM------ 110 (735)
T ss_pred CceEEecCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcCCCceEEecCCceEEEeecccCcchhH------
Confidence 448999999999999987521 45678899999998886 77999999999999999887641111
Q ss_pred ccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEE-cCCCCEEEEEeCCCcEEEEEccCCe--EE--------EEe
Q 047325 124 PTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSL-DQDCGLLYTASWDRTFKVWRISDSK--CL--------ESV 192 (368)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~~l~~~~~d~~i~iwd~~~~~--~~--------~~~ 192 (368)
..+..|.+-|.|+++ .++..++++||.|+.|.+||+.++. .+ ..+
T Consensus 111 ------------------------stir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl 166 (735)
T KOG0308|consen 111 ------------------------STIRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSL 166 (735)
T ss_pred ------------------------hhhhcccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccccccC
Confidence 112239999999999 7788899999999999999999772 22 223
Q ss_pred e-cCCCceEEEEeCCCC-eEEEEcCCCeEEEEEcCCCCCCcccccceeeccccccEEEEEEcCCCCEEEEecCCCcEEEE
Q 047325 193 S-AHDDAVNSVVSSSEG-LIFTGSADGTVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSSSRSIVYCGSSDGLVNFW 270 (368)
Q Consensus 193 ~-~~~~~v~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~ 270 (368)
. ++...|++++.++.+ .+++|+..+.+++||.++..+ ...+.+|...|..+..++||..++++++||+|++|
T Consensus 167 ~sG~k~siYSLA~N~t~t~ivsGgtek~lr~wDprt~~k------imkLrGHTdNVr~ll~~dDGt~~ls~sSDgtIrlW 240 (735)
T KOG0308|consen 167 GSGPKDSIYSLAMNQTGTIIVSGGTEKDLRLWDPRTCKK------IMKLRGHTDNVRVLLVNDDGTRLLSASSDGTIRLW 240 (735)
T ss_pred CCCCccceeeeecCCcceEEEecCcccceEEeccccccc------eeeeeccccceEEEEEcCCCCeEeecCCCceEEee
Confidence 3 788899999999999 899999999999999998743 56677999999999999999999999999999999
Q ss_pred eCCCccccceeeeccceEEEEEEe--CCCEEEEeeCCCeEEEEecCCCceeeeEeeeccccCeeEEEEecCC
Q 047325 271 EREKQLSHGGVLKGHKLAVLCLAA--AGKLVFSGSADKTICVWRRDGAIHTCLSVLTGHTGPVKCLAVEEDR 340 (368)
Q Consensus 271 d~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~l~~~~~~ 340 (368)
|+..+.++ ..+..|...+.++.. +-..+++|+.||.|..=|+.+.. +.. .+-....+|..+..+...
T Consensus 241 dLgqQrCl-~T~~vH~e~VWaL~~~~sf~~vYsG~rd~~i~~Tdl~n~~-~~t-lick~daPv~~l~~~~~~ 309 (735)
T KOG0308|consen 241 DLGQQRCL-ATYIVHKEGVWALQSSPSFTHVYSGGRDGNIYRTDLRNPA-KST-LICKEDAPVLKLHLHEHD 309 (735)
T ss_pred ecccccee-eeEEeccCceEEEeeCCCcceEEecCCCCcEEecccCCch-hhe-EeecCCCchhhhhhcccc
Confidence 99987666 557778877866654 56789999999999999988751 222 222344567777666433
No 91
>PTZ00420 coronin; Provisional
Probab=99.97 E-value=1.1e-28 Score=213.16 Aligned_cols=198 Identities=14% Similarity=0.160 Sum_probs=147.1
Q ss_pred eeeecCCCEeEEEEcCC-CCEEEEEeCCCcEEEEEccCCe--------EEEEeecCCCceEEEEeCCCC--eEEEEcCCC
Q 047325 149 LWIRHSDAVSCMSLDQD-CGLLYTASWDRTFKVWRISDSK--------CLESVSAHDDAVNSVVSSSEG--LIFTGSADG 217 (368)
Q Consensus 149 ~~~~~~~~v~~~~~~~~-~~~l~~~~~d~~i~iwd~~~~~--------~~~~~~~~~~~v~~~~~~~~~--~l~~~~~dg 217 (368)
.+.+|...|.+++|+|+ +++|++|+.|+.|++||+.++. ++..+.+|...|.+++|+|++ .+++++.|+
T Consensus 69 ~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~sVaf~P~g~~iLaSgS~Dg 148 (568)
T PTZ00420 69 KLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKISIIDWNPMNYYIMCSSGFDS 148 (568)
T ss_pred EEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEEEEEECCCCCeEEEEEeCCC
Confidence 34569999999999996 7899999999999999997642 345678899999999999988 567899999
Q ss_pred eEEEEEcCCCCCCcccccceeeccccccEEEEEEcCCCCEEEEecCCCcEEEEeCCCccccceeeeccceEE--E-----
Q 047325 218 TVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSSSRSIVYCGSSDGLVNFWEREKQLSHGGVLKGHKLAV--L----- 290 (368)
Q Consensus 218 ~i~i~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~--~----- 290 (368)
.|++||++.... ...+. +...|.+++|+|+|++|++++.|+.|++||++++... ..+.+|...+ .
T Consensus 149 tIrIWDl~tg~~------~~~i~-~~~~V~SlswspdG~lLat~s~D~~IrIwD~Rsg~~i-~tl~gH~g~~~s~~v~~~ 220 (568)
T PTZ00420 149 FVNIWDIENEKR------AFQIN-MPKKLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQEIA-SSFHIHDGGKNTKNIWID 220 (568)
T ss_pred eEEEEECCCCcE------EEEEe-cCCcEEEEEECCCCCEEEEEecCCEEEEEECCCCcEE-EEEecccCCceeEEEEee
Confidence 999999986532 22232 4567999999999999999999999999999987665 4566776532 1
Q ss_pred EEEeCCCEEEEeeCCC----eEEEEecCCCceeeeEe--eeccccCeeEEEEecCCeeeecCCcceEEEEEeeCCccccc
Q 047325 291 CLAAAGKLVFSGSADK----TICVWRRDGAIHTCLSV--LTGHTGPVKCLAVEEDRDSSSSTSSCAQRWIVYSGSLDKSD 364 (368)
Q Consensus 291 ~~~~~~~~l~~~~~dg----~i~iw~~~~~~~~~~~~--~~~h~~~v~~l~~~~~~~~~~~~~~~~~~w~l~sg~~D~~v 364 (368)
.+++++.+|++++.|+ .|+|||++... .++.. +..+.+.+......+++.+ +++|+.|++|
T Consensus 221 ~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~-~pl~~~~ld~~~~~L~p~~D~~tg~l------------~lsGkGD~tI 287 (568)
T PTZ00420 221 GLGGDDNYILSTGFSKNNMREMKLWDLKNTT-SALVTMSIDNASAPLIPHYDESTGLI------------YLIGKGDGNC 287 (568)
T ss_pred eEcCCCCEEEEEEcCCCCccEEEEEECCCCC-CceEEEEecCCccceEEeeeCCCCCE------------EEEEECCCeE
Confidence 2346888999887764 79999998532 33333 3333444444444555773 4455555555
Q ss_pred ccC
Q 047325 365 DDV 367 (368)
Q Consensus 365 ~i~ 367 (368)
|+|
T Consensus 288 r~~ 290 (568)
T PTZ00420 288 RYY 290 (568)
T ss_pred EEE
Confidence 554
No 92
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.97 E-value=3.6e-29 Score=185.40 Aligned_cols=234 Identities=20% Similarity=0.356 Sum_probs=193.5
Q ss_pred ecccCCCCCeeEEEEe--CCEEEEEeCCCeEEEEeecCCCccccccCCccccceeeeeccCCCCceeEecccceeeeeec
Q 047325 76 CGFKASSGLVKAIVIS--GEKIFTGHQDGKIRVWKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRH 153 (368)
Q Consensus 76 ~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (368)
..+++|.+.|.+++|+ |.+|++|+.|+++.+|+++..+..... .+.+|
T Consensus 14 r~~~~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~~~~------------------------------~~~gh 63 (313)
T KOG1407|consen 14 RELQGHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRFRKEL------------------------------VYRGH 63 (313)
T ss_pred HHhhhhhhcceEEEEcccCceeeecccCCceEEEEecchhhhhhh------------------------------cccCC
Confidence 4567899999999998 999999999999999999877432211 23459
Q ss_pred CCCEeEEEEcC-CCCEEEEEeCCCcEEEEEccCCeEEEEeecCCCceEEEEeCCCC-eEEEEcCCCeEEEEEcCCCCCCc
Q 047325 154 SDAVSCMSLDQ-DCGLLYTASWDRTFKVWRISDSKCLESVSAHDDAVNSVVSSSEG-LIFTGSADGTVKVWKREQHGKGT 231 (368)
Q Consensus 154 ~~~v~~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~ 231 (368)
.+.|-.++|+| +...|++++.|..|++||.++++++..+....+.+ -+.|+|+| ++++++.|..|.+.|.+....
T Consensus 64 ~~svdql~w~~~~~d~~atas~dk~ir~wd~r~~k~~~~i~~~~eni-~i~wsp~g~~~~~~~kdD~it~id~r~~~~-- 140 (313)
T KOG1407|consen 64 TDSVDQLCWDPKHPDLFATASGDKTIRIWDIRSGKCTARIETKGENI-NITWSPDGEYIAVGNKDDRITFIDARTYKI-- 140 (313)
T ss_pred CcchhhheeCCCCCcceEEecCCceEEEEEeccCcEEEEeeccCcce-EEEEcCCCCEEEEecCcccEEEEEecccce--
Confidence 99999999988 56689999999999999999999999988665555 46788888 999999999999999987532
Q ss_pred ccccceeeccccccEEEEEEcCCCCEEEEecCCCcEEEEeCCCccccceeeeccceEEEEEE--eCCCEEEEeeCCCeEE
Q 047325 232 KHSLAQTLLKQECAVTALVVSSSRSIVYCGSSDGLVNFWEREKQLSHGGVLKGHKLAVLCLA--AAGKLVFSGSADKTIC 309 (368)
Q Consensus 232 ~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~~~~~dg~i~ 309 (368)
.........+..++|+.++++++.....|+|.|.....- ++...+..|+...+|+. |+|+++|+|+.|-.+.
T Consensus 141 -----~~~~~~~~e~ne~~w~~~nd~Fflt~GlG~v~ILsypsL-kpv~si~AH~snCicI~f~p~GryfA~GsADAlvS 214 (313)
T KOG1407|consen 141 -----VNEEQFKFEVNEISWNNSNDLFFLTNGLGCVEILSYPSL-KPVQSIKAHPSNCICIEFDPDGRYFATGSADALVS 214 (313)
T ss_pred -----eehhcccceeeeeeecCCCCEEEEecCCceEEEEecccc-ccccccccCCcceEEEEECCCCceEeeccccceee
Confidence 222334456788899988888888888899999998864 44578889998886665 6799999999999999
Q ss_pred EEecCCCceeeeEeeeccccCeeEEEEecCCeeeecCCcce
Q 047325 310 VWRRDGAIHTCLSVLTGHTGPVKCLAVEEDRDSSSSTSSCA 350 (368)
Q Consensus 310 iw~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~ 350 (368)
+||++.. .+++.+..+.-||..|+|+.||++||+++.+.
T Consensus 215 LWD~~EL--iC~R~isRldwpVRTlSFS~dg~~lASaSEDh 253 (313)
T KOG1407|consen 215 LWDVDEL--ICERCISRLDWPVRTLSFSHDGRMLASASEDH 253 (313)
T ss_pred ccChhHh--hhheeeccccCceEEEEeccCcceeeccCccc
Confidence 9998876 78889999999999999999999877776553
No 93
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.97 E-value=3.2e-29 Score=198.24 Aligned_cols=252 Identities=20% Similarity=0.258 Sum_probs=202.8
Q ss_pred ccccccCCCceeeeccCcCCcEEEEEecCC--EEEEccCCCcEEEEcCC--cceecccCCCCCeeEEEEe--CCEEEEEe
Q 047325 26 QFEENLPQNGLIGSLVREEGHIYSLAASKD--LLYTGSDSKNIRVWKNL--KEFCGFKASSGLVKAIVIS--GEKIFTGH 99 (368)
Q Consensus 26 ~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~--~l~s~~~dg~i~iw~~~--~~~~~~~~~~~~v~~~~~~--~~~l~s~~ 99 (368)
...-+.+.++.+..+.||.-.|+.+.++++ .+++++.|..|+||... ........|..+|+.+... |+||++++
T Consensus 243 av~~d~~s~q~l~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~s~~~~~~~h~~~V~~ls~h~tgeYllsAs 322 (506)
T KOG0289|consen 243 AVLFDKPSNQILATLKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPLSSEPTSSRPHEEPVTGLSLHPTGEYLLSAS 322 (506)
T ss_pred eEEEecchhhhhhhccCcceEEEEEEeccchhheeecCCcceEEeeccccccCccccccccccceeeeeccCCcEEEEec
Confidence 344567889999999999999999999977 88999999999999876 3455678899999999887 99999999
Q ss_pred CCCeEEEEeecCCCccccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcCCCCEEEEEeCCCcEE
Q 047325 100 QDGKIRVWKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCGLLYTASWDRTFK 179 (368)
Q Consensus 100 ~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~ 179 (368)
.||+..+.|++++......... ...-.+++.+|+|||..|.+|..||.|+
T Consensus 323 ~d~~w~Fsd~~~g~~lt~vs~~------------------------------~s~v~~ts~~fHpDgLifgtgt~d~~vk 372 (506)
T KOG0289|consen 323 NDGTWAFSDISSGSQLTVVSDE------------------------------TSDVEYTSAAFHPDGLIFGTGTPDGVVK 372 (506)
T ss_pred CCceEEEEEccCCcEEEEEeec------------------------------cccceeEEeeEcCCceEEeccCCCceEE
Confidence 9999999999988753322210 0223589999999999999999999999
Q ss_pred EEEccCCeEEEEeecCCCceEEEEeCCCC-eEEEEcCCCeEEEEEcCCCCCCcccccceee-ccccccEEEEEEcCCCCE
Q 047325 180 VWRISDSKCLESVSAHDDAVNSVVSSSEG-LIFTGSADGTVKVWKREQHGKGTKHSLAQTL-LKQECAVTALVVSSSRSI 257 (368)
Q Consensus 180 iwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~ 257 (368)
+||+.++..+..|.+|.++|..+.|+.+| +|++++.|+.|++||+|.... ...+ ......+.++.|.+.|.+
T Consensus 373 iwdlks~~~~a~Fpght~~vk~i~FsENGY~Lat~add~~V~lwDLRKl~n------~kt~~l~~~~~v~s~~fD~SGt~ 446 (506)
T KOG0289|consen 373 IWDLKSQTNVAKFPGHTGPVKAISFSENGYWLATAADDGSVKLWDLRKLKN------FKTIQLDEKKEVNSLSFDQSGTY 446 (506)
T ss_pred EEEcCCccccccCCCCCCceeEEEeccCceEEEEEecCCeEEEEEehhhcc------cceeeccccccceeEEEcCCCCe
Confidence 99999999999999999999999999999 999999999999999997532 1111 122236999999999999
Q ss_pred EEEecCCCcEEEEeCCCc-cccceeeeccceEEEEEEe--CCCEEEEeeCCCeEEEEec
Q 047325 258 VYCGSSDGLVNFWEREKQ-LSHGGVLKGHKLAVLCLAA--AGKLVFSGSADKTICVWRR 313 (368)
Q Consensus 258 l~~~~~dg~i~i~d~~~~-~~~~~~~~~~~~~~~~~~~--~~~~l~~~~~dg~i~iw~~ 313 (368)
|+.++.|=.|++++-.+. .........|.+...++.+ ..+++++++.|..++++.+
T Consensus 447 L~~~g~~l~Vy~~~k~~k~W~~~~~~~~~sg~st~v~Fg~~aq~l~s~smd~~l~~~a~ 505 (506)
T KOG0289|consen 447 LGIAGSDLQVYICKKKTKSWTEIKELADHSGLSTGVRFGEHAQYLASTSMDAILRLYAL 505 (506)
T ss_pred EEeecceeEEEEEecccccceeeehhhhcccccceeeecccceEEeeccchhheEEeec
Confidence 999988777777764432 2222344456555555554 5789999999999888753
No 94
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=1e-29 Score=199.93 Aligned_cols=247 Identities=17% Similarity=0.273 Sum_probs=201.0
Q ss_pred cceecccCCCCCeeEEEEe--CCEEEEEeCCCeEEEEeecCCCccccccCCccccceeeeeccCCCCceeEecccceeee
Q 047325 73 KEFCGFKASSGLVKAIVIS--GEKIFTGHQDGKIRVWKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALW 150 (368)
Q Consensus 73 ~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (368)
+..+.+..|...|.-+.|+ |.|||+++.|.+..+|++....... -...+
T Consensus 215 qt~qil~~htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~~k-----------------------------l~~tl 265 (519)
T KOG0293|consen 215 QTWQILQDHTDEVWFLQFSHNGKYLASASKDSTAIIWIVVYDVHFK-----------------------------LKKTL 265 (519)
T ss_pred hhhhhHhhCCCcEEEEEEcCCCeeEeeccCCceEEEEEEecCccee-----------------------------eeeee
Confidence 3455678899999999998 8999999999999999987665311 12345
Q ss_pred eecCCCEeEEEEcCCCCEEEEEeCCCcEEEEEccCCeEEEEeec-CCCceEEEEeCCCC-eEEEEcCCCeEEEEEcCCCC
Q 047325 151 IRHSDAVSCMSLDQDCGLLYTASWDRTFKVWRISDSKCLESVSA-HDDAVNSVVSSSEG-LIFTGSADGTVKVWKREQHG 228 (368)
Q Consensus 151 ~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~-~~~~v~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~ 228 (368)
.+|..+|..+.|+||.++|++|+.|..+.+||+.+|.....++. +...+.+++|.||| .+++|+.|+.+..||++..
T Consensus 266 vgh~~~V~yi~wSPDdryLlaCg~~e~~~lwDv~tgd~~~~y~~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlDgn- 344 (519)
T KOG0293|consen 266 VGHSQPVSYIMWSPDDRYLLACGFDEVLSLWDVDTGDLRHLYPSGLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLDGN- 344 (519)
T ss_pred ecccCceEEEEECCCCCeEEecCchHheeeccCCcchhhhhcccCcCCCcceeEEccCCceeEecCCCCcEEEecCCcc-
Confidence 67999999999999999999999999999999999998887763 46789999999999 9999999999999999864
Q ss_pred CCcccccceeeccc-cccEEEEEEcCCCCEEEEecCCCcEEEEeCCCccccceeeeccceEEEEEEeCCCEEEEeeCCCe
Q 047325 229 KGTKHSLAQTLLKQ-ECAVTALVVSSSRSIVYCGSSDGLVNFWEREKQLSHGGVLKGHKLAVLCLAAAGKLVFSGSADKT 307 (368)
Q Consensus 229 ~~~~~~~~~~~~~~-~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~ 307 (368)
......+. ...|.+++..+||+++++.+.|..|++|+.+...........+.....+++-+++++++--.+..
T Consensus 345 ------~~~~W~gvr~~~v~dlait~Dgk~vl~v~~d~~i~l~~~e~~~dr~lise~~~its~~iS~d~k~~LvnL~~qe 418 (519)
T KOG0293|consen 345 ------ILGNWEGVRDPKVHDLAITYDGKYVLLVTVDKKIRLYNREARVDRGLISEEQPITSFSISKDGKLALVNLQDQE 418 (519)
T ss_pred ------hhhcccccccceeEEEEEcCCCcEEEEEecccceeeechhhhhhhccccccCceeEEEEcCCCcEEEEEcccCe
Confidence 23333332 24589999999999999999999999999987655544445566666788889999999999999
Q ss_pred EEEEecCCCceeeeEeeeccccC--eeEEEEecCCeeeecCCcceEEEEEeeCCcccccccCC
Q 047325 308 ICVWRRDGAIHTCLSVLTGHTGP--VKCLAVEEDRDSSSSTSSCAQRWIVYSGSLDKSDDDVH 368 (368)
Q Consensus 308 i~iw~~~~~~~~~~~~~~~h~~~--v~~l~~~~~~~~~~~~~~~~~~w~l~sg~~D~~v~i~h 368 (368)
+++||++.. ..+..+.||... |..-+|-.-... ++++||+|+.|+|||
T Consensus 419 i~LWDl~e~--~lv~kY~Ghkq~~fiIrSCFgg~~~~-----------fiaSGSED~kvyIWh 468 (519)
T KOG0293|consen 419 IHLWDLEEN--KLVRKYFGHKQGHFIIRSCFGGGNDK-----------FIASGSEDSKVYIWH 468 (519)
T ss_pred eEEeecchh--hHHHHhhcccccceEEEeccCCCCcc-----------eEEecCCCceEEEEE
Confidence 999999854 778888888765 333344433211 789999999999998
No 95
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.97 E-value=1.1e-29 Score=213.06 Aligned_cols=287 Identities=16% Similarity=0.191 Sum_probs=204.9
Q ss_pred EEEecCC--EEEEccCCCcEEEEcCCcc-----eecccCCCCCeeEEEEe-------------CCEEEEEeCCCeEEEEe
Q 047325 49 SLAASKD--LLYTGSDSKNIRVWKNLKE-----FCGFKASSGLVKAIVIS-------------GEKIFTGHQDGKIRVWK 108 (368)
Q Consensus 49 ~~~~~~~--~l~s~~~dg~i~iw~~~~~-----~~~~~~~~~~v~~~~~~-------------~~~l~s~~~dg~i~vw~ 108 (368)
++.|++. .|.+.-.|..++|||+... ...+..|...|..+..- ...+++++.|++|++|+
T Consensus 329 A~~Fdet~~klscVYndhSlYvWDvrD~~kvgk~~s~lyHS~ciW~Ve~~p~nv~~~~~aclp~~cF~TCSsD~TIRlW~ 408 (1080)
T KOG1408|consen 329 ACQFDETTDKLSCVYNDHSLYVWDVRDVNKVGKCSSMLYHSACIWDVENLPCNVHSPTAACLPRGCFTTCSSDGTIRLWD 408 (1080)
T ss_pred EEEecCCCceEEEEEcCceEEEEeccccccccceeeeeeccceeeeeccccccccCcccccCCccceeEecCCCcEEEee
Confidence 4567744 8888889999999998743 33455677777766431 45799999999999999
Q ss_pred ecCCCccccccCCcccc-ceeeeeccCCCCcee-----EecccceeeeeecCCCEeEEEEcCCCCEEEEEeCCCcEEEEE
Q 047325 109 ISPKNQSVHKRAGTLPT-LKDIFKSSIKPSNYI-----EVRRHRTALWIRHSDAVSCMSLDQDCGLLYTASWDRTFKVWR 182 (368)
Q Consensus 109 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd 182 (368)
++............... ...+. ........+ .+.........+....+.+++++|++++|++|..-|+|++||
T Consensus 409 l~~ctnn~vyrRNils~~l~ki~-y~d~~~q~~~d~~~~~fdka~~s~~d~r~G~R~~~vSp~gqhLAsGDr~GnlrVy~ 487 (1080)
T KOG1408|consen 409 LAFCTNNQVYRRNILSANLSKIP-YEDSTQQIMHDASAGIFDKALVSTCDSRFGFRALAVSPDGQHLASGDRGGNLRVYD 487 (1080)
T ss_pred cccccccceeecccchhhhhcCc-cccCchhhhhhccCCcccccchhhcCcccceEEEEECCCcceecccCccCceEEEE
Confidence 98732211111100000 00000 000000000 001111122234567899999999999999999999999999
Q ss_pred ccCCeEEEEeecCCCceEEEEeCCCC----eEEEEcCCCeEEEEEcCCCCCCcccccceeecccc---------------
Q 047325 183 ISDSKCLESVSAHDDAVNSVVSSSEG----LIFTGSADGTVKVWKREQHGKGTKHSLAQTLLKQE--------------- 243 (368)
Q Consensus 183 ~~~~~~~~~~~~~~~~v~~~~~~~~~----~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~--------------- 243 (368)
+...+.+..+.+|+..|.|+.++... +|++++.|+-|++||...+- .+...+.+|.
T Consensus 488 Lq~l~~~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rny-----~l~qtld~HSssITsvKFa~~gln~ 562 (1080)
T KOG1408|consen 488 LQELEYTCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRNY-----DLVQTLDGHSSSITSVKFACNGLNR 562 (1080)
T ss_pred ehhhhhhhheecccceeEEEeecCchhhhHhhhhccCCceEEEEeccccc-----chhhhhcccccceeEEEEeecCCce
Confidence 99999999999999999999998643 89999999999999986432 1222333333
Q ss_pred ----------------------------------ccEEEEEEcCCCCEEEEecCCCcEEEEeCCCccccceeee--ccce
Q 047325 244 ----------------------------------CAVTALVVSSSRSIVYCGSSDGLVNFWEREKQLSHGGVLK--GHKL 287 (368)
Q Consensus 244 ----------------------------------~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~--~~~~ 287 (368)
..+..++..|..+++++++.|..|+|||+++++....+.. +|.+
T Consensus 563 ~MiscGADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k~v~t~cQDrnirif~i~sgKq~k~FKgs~~~eG 642 (1080)
T KOG1408|consen 563 KMISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPTSKLVVTVCQDRNIRIFDIESGKQVKSFKGSRDHEG 642 (1080)
T ss_pred EEEeccCchhhheehhccccCceeccccccccccceEEEeeeCCCcceEEEEecccceEEEeccccceeeeecccccCCC
Confidence 3455666667778999999999999999998877644433 3433
Q ss_pred EE--EEEEeCCCEEEEeeCCCeEEEEecCCCceeeeEeeeccccCeeEEEEecCCeee
Q 047325 288 AV--LCLAAAGKLVFSGSADKTICVWRRDGAIHTCLSVLTGHTGPVKCLAVEEDRDSS 343 (368)
Q Consensus 288 ~~--~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~ 343 (368)
.. +.+.|.|.||++...|.++.++|+-++ +++.+..+|.+.|+.+.|.+|-+.|
T Consensus 643 ~lIKv~lDPSgiY~atScsdktl~~~Df~sg--EcvA~m~GHsE~VTG~kF~nDCkHl 698 (1080)
T KOG1408|consen 643 DLIKVILDPSGIYLATSCSDKTLCFVDFVSG--ECVAQMTGHSEAVTGVKFLNDCKHL 698 (1080)
T ss_pred ceEEEEECCCccEEEEeecCCceEEEEeccc--hhhhhhcCcchheeeeeecccchhh
Confidence 33 456688999999999999999999887 8999999999999999999999843
No 96
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.97 E-value=1.3e-27 Score=173.83 Aligned_cols=281 Identities=19% Similarity=0.220 Sum_probs=216.9
Q ss_pred cCcCCcEEEEEecCC--EEEEccCCCcEEEEcCCc-------------c----eecccCCCCCeeEEEEe--CCEEEEEe
Q 047325 41 VREEGHIYSLAASKD--LLYTGSDSKNIRVWKNLK-------------E----FCGFKASSGLVKAIVIS--GEKIFTGH 99 (368)
Q Consensus 41 ~~h~~~i~~~~~~~~--~l~s~~~dg~i~iw~~~~-------------~----~~~~~~~~~~v~~~~~~--~~~l~s~~ 99 (368)
...+..|.+++|.|. +.++|+..++.||-.... + ...-+.|.+.|+|.+|+ |+.+++|+
T Consensus 29 l~dsqairav~fhp~g~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiyc~~ws~~geliatgs 108 (350)
T KOG0641|consen 29 LEDSQAIRAVAFHPAGGLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIYCTAWSPCGELIATGS 108 (350)
T ss_pred ecchhheeeEEecCCCceEEeccCCceEEEEccccccCcccccccccCCCeEEeeeccccCccEEEEEecCccCeEEecC
Confidence 345677999999865 889999999999874210 0 12346799999999999 99999999
Q ss_pred CCCeEEEEeecCCCccccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcCC----CCEEEEEe-C
Q 047325 100 QDGKIRVWKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQD----CGLLYTAS-W 174 (368)
Q Consensus 100 ~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~----~~~l~~~~-~ 174 (368)
.|.+|++..++.......- ....+.-|.+.|..++|..+ +..|++++ .
T Consensus 109 ndk~ik~l~fn~dt~~~~g---------------------------~dle~nmhdgtirdl~fld~~~s~~~il~s~gag 161 (350)
T KOG0641|consen 109 NDKTIKVLPFNADTCNATG---------------------------HDLEFNMHDGTIRDLAFLDDPESGGAILASAGAG 161 (350)
T ss_pred CCceEEEEecccccccccC---------------------------cceeeeecCCceeeeEEecCCCcCceEEEecCCC
Confidence 9999999988765432211 11223449999999999653 45677665 3
Q ss_pred CCcEEEEEccCCeEEEEeecCCCceEEEEeCCCCeEEEEcCCCeEEEEEcCCCCCCcccccceeecc-------ccccEE
Q 047325 175 DRTFKVWRISDSKCLESVSAHDDAVNSVVSSSEGLIFTGSADGTVKVWKREQHGKGTKHSLAQTLLK-------QECAVT 247 (368)
Q Consensus 175 d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~-------~~~~i~ 247 (368)
|..|++-|..+|+..+.+.+|.+.|.++.--..-.+++|+.|.+|++||++.+. ++..+.. ....|.
T Consensus 162 dc~iy~tdc~~g~~~~a~sghtghilalyswn~~m~~sgsqdktirfwdlrv~~------~v~~l~~~~~~~glessava 235 (350)
T KOG0641|consen 162 DCKIYITDCGRGQGFHALSGHTGHILALYSWNGAMFASGSQDKTIRFWDLRVNS------CVNTLDNDFHDGGLESSAVA 235 (350)
T ss_pred cceEEEeecCCCCcceeecCCcccEEEEEEecCcEEEccCCCceEEEEeeeccc------eeeeccCcccCCCcccceeE
Confidence 667777888999999999999999988843333399999999999999998763 2322221 236799
Q ss_pred EEEEcCCCCEEEEecCCCcEEEEeCCCccccceeeeccceEEEE--EEeCCCEEEEeeCCCeEEEEecCCC--ceeeeEe
Q 047325 248 ALVVSSSRSIVYCGSSDGLVNFWEREKQLSHGGVLKGHKLAVLC--LAAAGKLVFSGSADKTICVWRRDGA--IHTCLSV 323 (368)
Q Consensus 248 ~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~~~~~dg~i~iw~~~~~--~~~~~~~ 323 (368)
+++..|.|++|++|-.|....+||++.+..+ ..+..|...+.| |+|...|+++++.|..|++-|+... ...++..
T Consensus 236 av~vdpsgrll~sg~~dssc~lydirg~r~i-q~f~phsadir~vrfsp~a~yllt~syd~~ikltdlqgdla~el~~~v 314 (350)
T KOG0641|consen 236 AVAVDPSGRLLASGHADSSCMLYDIRGGRMI-QRFHPHSADIRCVRFSPGAHYLLTCSYDMKIKLTDLQGDLAHELPIMV 314 (350)
T ss_pred EEEECCCcceeeeccCCCceEEEEeeCCcee-eeeCCCccceeEEEeCCCceEEEEecccceEEEeecccchhhcCceEE
Confidence 9999999999999999999999999987666 566778877755 5567889999999999999998653 2234455
Q ss_pred eeccccCeeEEEEecCCeeeecCCcceEEEEEeeCCcccccccC
Q 047325 324 LTGHTGPVKCLAVEEDRDSSSSTSSCAQRWIVYSGSLDKSDDDV 367 (368)
Q Consensus 324 ~~~h~~~v~~l~~~~~~~~~~~~~~~~~~w~l~sg~~D~~v~i~ 367 (368)
...|...+..+.|+|..- .+.+.+.|+++-+|
T Consensus 315 v~ehkdk~i~~rwh~~d~------------sfisssadkt~tlw 346 (350)
T KOG0641|consen 315 VAEHKDKAIQCRWHPQDF------------SFISSSADKTATLW 346 (350)
T ss_pred EEeccCceEEEEecCccc------------eeeeccCcceEEEe
Confidence 667999999999999987 56777778877776
No 97
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=4e-30 Score=213.04 Aligned_cols=233 Identities=24% Similarity=0.384 Sum_probs=190.7
Q ss_pred CCEEEEEeCCCeEEEEeecCCCccccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcCCCCEEEE
Q 047325 92 GEKIFTGHQDGKIRVWKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCGLLYT 171 (368)
Q Consensus 92 ~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~ 171 (368)
+++|++|+.||.|++|++.......... ....+..|.+.|+.+....+++.|++
T Consensus 37 ~ryLfTgGRDg~i~~W~~~~d~~~~s~~--------------------------~~asme~HsDWVNDiiL~~~~~tlIS 90 (735)
T KOG0308|consen 37 GRYLFTGGRDGIIRLWSVTQDSNEPSTP--------------------------YIASMEHHSDWVNDIILCGNGKTLIS 90 (735)
T ss_pred CceEEecCCCceEEEeccccccCCcccc--------------------------hhhhhhhhHhHHhhHHhhcCCCceEE
Confidence 6789999999999999987654321111 01122339999999999999999999
Q ss_pred EeCCCcEEEEEccCC--eEEEEeecCCCceEEEEe-CCCC-eEEEEcCCCeEEEEEcCCCCC--C--cccccceeec-cc
Q 047325 172 ASWDRTFKVWRISDS--KCLESVSAHDDAVNSVVS-SSEG-LIFTGSADGTVKVWKREQHGK--G--TKHSLAQTLL-KQ 242 (368)
Q Consensus 172 ~~~d~~i~iwd~~~~--~~~~~~~~~~~~v~~~~~-~~~~-~l~~~~~dg~i~i~d~~~~~~--~--~~~~~~~~~~-~~ 242 (368)
++.|-+|++|+...+ -++.++..|...|.|++. .++. .+++|+-|+.|.+||++.+.. . ........+. ++
T Consensus 91 ~SsDtTVK~W~~~~~~~~c~stir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~ 170 (735)
T KOG0308|consen 91 ASSDTTVKVWNAHKDNTFCMSTIRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGP 170 (735)
T ss_pred ecCCceEEEeecccCcchhHhhhhcccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCC
Confidence 999999999999877 578889999999999999 5566 999999999999999986522 0 0111122222 78
Q ss_pred cccEEEEEEcCCCCEEEEecCCCcEEEEeCCCccccceeeeccceEEEE--EEeCCCEEEEeeCCCeEEEEecCCCceee
Q 047325 243 ECAVTALVVSSSRSIVYCGSSDGLVNFWEREKQLSHGGVLKGHKLAVLC--LAAAGKLVFSGSADKTICVWRRDGAIHTC 320 (368)
Q Consensus 243 ~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~~~~~dg~i~iw~~~~~~~~~ 320 (368)
..+|.+++..+.+..+++|+.++.+++||.++.++. ..+.+|...|.+ +..||..+++++.||+|++||+... ++
T Consensus 171 k~siYSLA~N~t~t~ivsGgtek~lr~wDprt~~ki-mkLrGHTdNVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQ--rC 247 (735)
T KOG0308|consen 171 KDSIYSLAMNQTGTIIVSGGTEKDLRLWDPRTCKKI-MKLRGHTDNVRVLLVNDDGTRLLSASSDGTIRLWDLGQQ--RC 247 (735)
T ss_pred ccceeeeecCCcceEEEecCcccceEEeccccccce-eeeeccccceEEEEEcCCCCeEeecCCCceEEeeecccc--ce
Confidence 889999999999999999999999999999998776 455699887755 4568999999999999999988665 89
Q ss_pred eEeeeccccCeeEEEEecCCeeeecCCcceEEEEEeeCCcccccc
Q 047325 321 LSVLTGHTGPVKCLAVEEDRDSSSSTSSCAQRWIVYSGSLDKSDD 365 (368)
Q Consensus 321 ~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~w~l~sg~~D~~v~ 365 (368)
+.++..|...|+++..+|+-. .+++|+.||.|.
T Consensus 248 l~T~~vH~e~VWaL~~~~sf~------------~vYsG~rd~~i~ 280 (735)
T KOG0308|consen 248 LATYIVHKEGVWALQSSPSFT------------HVYSGGRDGNIY 280 (735)
T ss_pred eeeEEeccCceEEEeeCCCcc------------eEEecCCCCcEE
Confidence 999999999999999999888 678888888764
No 98
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=4.1e-29 Score=200.39 Aligned_cols=238 Identities=21% Similarity=0.330 Sum_probs=192.4
Q ss_pred eeeccCcCCcEEEEEec--CCEEEEccCCCcEEEEcCCc--ceecccCCCCCeeEEEEe---CCEEEEEeCCCeEEEEee
Q 047325 37 IGSLVREEGHIYSLAAS--KDLLYTGSDSKNIRVWKNLK--EFCGFKASSGLVKAIVIS---GEKIFTGHQDGKIRVWKI 109 (368)
Q Consensus 37 ~~~~~~h~~~i~~~~~~--~~~l~s~~~dg~i~iw~~~~--~~~~~~~~~~~v~~~~~~---~~~l~s~~~dg~i~vw~~ 109 (368)
.+++....+.|.+++|- |.+||.|...|.|+|+|..+ .+..+.+|..+|..+.|. +..+++|+.|+.+++||+
T Consensus 61 ~k~~srFk~~v~s~~fR~DG~LlaaGD~sG~V~vfD~k~r~iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~ 140 (487)
T KOG0310|consen 61 RKTFSRFKDVVYSVDFRSDGRLLAAGDESGHVKVFDMKSRVILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDL 140 (487)
T ss_pred hhhHHhhccceeEEEeecCCeEEEccCCcCcEEEeccccHHHHHHHhhccCceeEEEecccCCeEEEecCCCceEEEEEc
Confidence 34455567778888885 77999999999999999655 466889999999999998 668899999999999999
Q ss_pred cCCCccccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcCC-CCEEEEEeCCCcEEEEEccCC-e
Q 047325 110 SPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQD-CGLLYTASWDRTFKVWRISDS-K 187 (368)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~d~~i~iwd~~~~-~ 187 (368)
.+... . ..+.+|++.|.|.+++|. +..+++|+.||.|++||+++. .
T Consensus 141 s~a~v-~-------------------------------~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~ 188 (487)
T KOG0310|consen 141 STAYV-Q-------------------------------AELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLTS 188 (487)
T ss_pred CCcEE-E-------------------------------EEecCCcceeEeeccccCCCeEEEecCCCceEEEEEeccCCc
Confidence 87752 1 123459999999999995 558999999999999999987 5
Q ss_pred EEEEeecCCCceEEEEeCCCC-eEEEEcCCCeEEEEEcCCCCCCcccccceeeccccccEEEEEEcCCCCEEEEecCCCc
Q 047325 188 CLESVSAHDDAVNSVVSSSEG-LIFTGSADGTVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSSSRSIVYCGSSDGL 266 (368)
Q Consensus 188 ~~~~~~~~~~~v~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~ 266 (368)
.+.++. |..+|..+.+.|.| .+++++ ...+++||+..+++ .......|...|+|+++..++..|++|+-|+.
T Consensus 189 ~v~eln-hg~pVe~vl~lpsgs~iasAg-Gn~vkVWDl~~G~q-----ll~~~~~H~KtVTcL~l~s~~~rLlS~sLD~~ 261 (487)
T KOG0310|consen 189 RVVELN-HGCPVESVLALPSGSLIASAG-GNSVKVWDLTTGGQ-----LLTSMFNHNKTVTCLRLASDSTRLLSGSLDRH 261 (487)
T ss_pred eeEEec-CCCceeeEEEcCCCCEEEEcC-CCeEEEEEecCCce-----ehhhhhcccceEEEEEeecCCceEeecccccc
Confidence 666665 89999999999998 555544 66899999986654 44455569999999999999999999999999
Q ss_pred EEEEeCCCccccceeeeccceEEEEEEeCCCEEEEeeCCCeEEEEec
Q 047325 267 VNFWEREKQLSHGGVLKGHKLAVLCLAAAGKLVFSGSADKTICVWRR 313 (368)
Q Consensus 267 i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~ 313 (368)
+++||+.+-+.........+.-.++++|+++.++.|..||.+.+=+.
T Consensus 262 VKVfd~t~~Kvv~s~~~~~pvLsiavs~dd~t~viGmsnGlv~~rr~ 308 (487)
T KOG0310|consen 262 VKVFDTTNYKVVHSWKYPGPVLSIAVSPDDQTVVIGMSNGLVSIRRR 308 (487)
T ss_pred eEEEEccceEEEEeeecccceeeEEecCCCceEEEecccceeeeehh
Confidence 99999776555433333333334667789999999999999877644
No 99
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.97 E-value=4.6e-29 Score=198.69 Aligned_cols=257 Identities=22% Similarity=0.314 Sum_probs=203.1
Q ss_pred eecccCCCCCeeEEEEe--CCEEEEEeCCCeEEEEeecCCCccccccCCccccceeeeeccCCCCceeEecccceeeeee
Q 047325 75 FCGFKASSGLVKAIVIS--GEKIFTGHQDGKIRVWKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIR 152 (368)
Q Consensus 75 ~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (368)
+..+..|.-+|.+++++ +.+.++++.||+|.-|++.++............ ... .+......+ .+
T Consensus 135 ~~~~~~H~~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev-----~k~-----~~~~~k~~r----~~ 200 (479)
T KOG0299|consen 135 FRVIGKHQLSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEV-----LKS-----HGNPLKESR----KG 200 (479)
T ss_pred ceeeccccCcceEEEeeccccceeecCCCcceeeeehhcCcccccccccchh-----hhh-----ccCCCCccc----cc
Confidence 45567899999999998 669999999999999999988754222211000 000 000000000 25
Q ss_pred cCCCEeEEEEcCCCCEEEEEeCCCcEEEEEccCCeEEEEeecCCCceEEEEeCCCC-eEEEEcCCCeEEEEEcCCCCCCc
Q 047325 153 HSDAVSCMSLDQDCGLLYTASWDRTFKVWRISDSKCLESVSAHDDAVNSVVSSSEG-LIFTGSADGTVKVWKREQHGKGT 231 (368)
Q Consensus 153 ~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~ 231 (368)
|...+.+++.++|+++|++|+.|..|.|||.++.+.++.+.+|.+.|.+++|-... .+++++.|+.|++|+++..
T Consensus 201 h~keil~~avS~Dgkylatgg~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~---- 276 (479)
T KOG0299|consen 201 HVKEILTLAVSSDGKYLATGGRDRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQL---- 276 (479)
T ss_pred ccceeEEEEEcCCCcEEEecCCCceEEEecCcccchhhcccccccceeeeeeecCccceeeeecCCceEEEehhHh----
Confidence 99999999999999999999999999999999999999999999999999998766 9999999999999999765
Q ss_pred ccccceeeccccccEEEEEEcCCCCEEEEecCCCcEEEEeCCCccccceeeeccceEEEEEEe-CCCEEEEeeCCCeEEE
Q 047325 232 KHSLAQTLLKQECAVTALVVSSSRSIVYCGSSDGLVNFWEREKQLSHGGVLKGHKLAVLCLAA-AGKLVFSGSADKTICV 310 (368)
Q Consensus 232 ~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~dg~i~i 310 (368)
..+..+.+|++.|..+....-++.+-+|+.|+++++|++..... ..+.++...+-|+++ +...+++|+.||.|.+
T Consensus 277 --s~vetlyGHqd~v~~IdaL~reR~vtVGgrDrT~rlwKi~eesq--lifrg~~~sidcv~~In~~HfvsGSdnG~IaL 352 (479)
T KOG0299|consen 277 --SYVETLYGHQDGVLGIDALSRERCVTVGGRDRTVRLWKIPEESQ--LIFRGGEGSIDCVAFINDEHFVSGSDNGSIAL 352 (479)
T ss_pred --HHHHHHhCCccceeeechhcccceEEeccccceeEEEeccccce--eeeeCCCCCeeeEEEecccceeeccCCceEEE
Confidence 45778899999999999988888888899999999999965433 467788878877776 7889999999999999
Q ss_pred EecCCCceeeeEeee-cc-----------ccCeeEEEEecCCeeeecCCcceEEEEEeeCCcccccccC
Q 047325 311 WRRDGAIHTCLSVLT-GH-----------TGPVKCLAVEEDRDSSSSTSSCAQRWIVYSGSLDKSDDDV 367 (368)
Q Consensus 311 w~~~~~~~~~~~~~~-~h-----------~~~v~~l~~~~~~~~~~~~~~~~~~w~l~sg~~D~~v~i~ 367 (368)
|++... +++++.. +| ...|++++..|... ++++|+.+|.||+|
T Consensus 353 Ws~~KK--kplf~~~~AHgv~~~~~~~~~~~Witsla~i~~sd------------L~asGS~~G~vrLW 407 (479)
T KOG0299|consen 353 WSLLKK--KPLFTSRLAHGVIPELDPVNGNFWITSLAVIPGSD------------LLASGSWSGCVRLW 407 (479)
T ss_pred eeeccc--CceeEeeccccccCCccccccccceeeeEecccCc------------eEEecCCCCceEEE
Confidence 988765 3343331 12 22789999999999 56666667776666
No 100
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.97 E-value=6.4e-28 Score=179.38 Aligned_cols=237 Identities=19% Similarity=0.237 Sum_probs=198.7
Q ss_pred cccCCCCCeeEEEEe--CCEEEEEeCCCeEEEEeecCCCccccccCCccccceeeeeccCCCCceeEecccceeeeeecC
Q 047325 77 GFKASSGLVKAIVIS--GEKIFTGHQDGKIRVWKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHS 154 (368)
Q Consensus 77 ~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (368)
.+++|..+++.+.++ |++|++++.|.+..+|--.+++ +...+.||.
T Consensus 5 ~l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nGe--------------------------------rlGty~GHt 52 (327)
T KOG0643|consen 5 LLQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGE--------------------------------RLGTYDGHT 52 (327)
T ss_pred ccccCccccceEEecCCCcEEEEecCCCCceEEEecCCc--------------------------------eeeeecCCC
Confidence 468899999999999 9999999999999999877665 455677899
Q ss_pred CCEeEEEEcCCCCEEEEEeCCCcEEEEEccCCeEEEEeecCCCceEEEEeCCCC-eEEEEc-----CCCeEEEEEcCCCC
Q 047325 155 DAVSCMSLDQDCGLLYTASWDRTFKVWRISDSKCLESVSAHDDAVNSVVSSSEG-LIFTGS-----ADGTVKVWKREQHG 228 (368)
Q Consensus 155 ~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~-----~dg~i~i~d~~~~~ 228 (368)
+.|.|+..+.+.+++++|+.|.++++||+++|+.+..++ ...+|..+.|+++| +++... ..+.|.++|++...
T Consensus 53 GavW~~Did~~s~~liTGSAD~t~kLWDv~tGk~la~~k-~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~ 131 (327)
T KOG0643|consen 53 GAVWCCDIDWDSKHLITGSADQTAKLWDVETGKQLATWK-TNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDS 131 (327)
T ss_pred ceEEEEEecCCcceeeeccccceeEEEEcCCCcEEEEee-cCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCCh
Confidence 999999999999999999999999999999999999997 46789999999999 333332 34679999998543
Q ss_pred C-CcccccceeeccccccEEEEEEcCCCCEEEEecCCCcEEEEeCCCccccceeeeccceEE--EEEEeCCCEEEEeeCC
Q 047325 229 K-GTKHSLAQTLLKQECAVTALVVSSSRSIVYCGSSDGLVNFWEREKQLSHGGVLKGHKLAV--LCLAAAGKLVFSGSAD 305 (368)
Q Consensus 229 ~-~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~~~d 305 (368)
. .....+...+..+...++.+-|.|-+++|++|.+||.|.+||.++++........|...| +.+++|..++++++.|
T Consensus 132 ~~~~s~ep~~kI~t~~skit~a~Wg~l~~~ii~Ghe~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~d~T~FiT~s~D 211 (327)
T KOG0643|consen 132 SDIDSEEPYLKIPTPDSKITSALWGPLGETIIAGHEDGSISIYDARTGKELVDSDEEHSSKINDLQFSRDRTYFITGSKD 211 (327)
T ss_pred hhhcccCceEEecCCccceeeeeecccCCEEEEecCCCcEEEEEcccCceeeechhhhccccccccccCCcceEEecccC
Confidence 2 122334666777889999999999999999999999999999999888777777777777 5566789999999999
Q ss_pred CeEEEEecCCCceeeeEeeeccccCeeEEEEecCCeeeecCCcc
Q 047325 306 KTICVWRRDGAIHTCLSVLTGHTGPVKCLAVEEDRDSSSSTSSC 349 (368)
Q Consensus 306 g~i~iw~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~ 349 (368)
.+-++||+.+. ..++++. ...||++.+++|-...+..+.+.
T Consensus 212 ttakl~D~~tl--~v~Kty~-te~PvN~aaisP~~d~VilgGGq 252 (327)
T KOG0643|consen 212 TTAKLVDVRTL--EVLKTYT-TERPVNTAAISPLLDHVILGGGQ 252 (327)
T ss_pred ccceeeeccce--eeEEEee-ecccccceecccccceEEecCCc
Confidence 99999998876 6666665 57799999999988765544443
No 101
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=2.8e-29 Score=211.99 Aligned_cols=273 Identities=16% Similarity=0.244 Sum_probs=203.8
Q ss_pred cEEEEEecCC--EEEEccCCCcEEEEcCCcc----ee--cccC---CCCCeeEEEEe---CCEEEEEeCCCeEEEEeecC
Q 047325 46 HIYSLAASKD--LLYTGSDSKNIRVWKNLKE----FC--GFKA---SSGLVKAIVIS---GEKIFTGHQDGKIRVWKISP 111 (368)
Q Consensus 46 ~i~~~~~~~~--~l~s~~~dg~i~iw~~~~~----~~--~~~~---~~~~v~~~~~~---~~~l~s~~~dg~i~vw~~~~ 111 (368)
...+++.+++ .++.++. ..++|+..... .+ .++. -...+..+.|. .++|++++..|.|.+||+..
T Consensus 41 ~~nAIs~nr~~~qiv~AGr-s~lklyai~~~~~~~~~~~~~k~kqn~~~S~~DVkW~~~~~NlIAT~s~nG~i~vWdlnk 119 (839)
T KOG0269|consen 41 KANAISVNRDINQIVVAGR-SLLKLYAINPNDFSEKCNHRFKTKQNKFYSAADVKWGQLYSNLIATCSTNGVISVWDLNK 119 (839)
T ss_pred ccceEeecCCcceeEEecc-cceeeEeeCcccCCcceeeecccccceeeehhhcccccchhhhheeecCCCcEEEEecCc
Confidence 3445555544 6666654 36777764421 11 1111 11234455555 77999999999999999986
Q ss_pred CCccccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcC-CCCEEEEEeCCCcEEEEEccCCeEEE
Q 047325 112 KNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQ-DCGLLYTASWDRTFKVWRISDSKCLE 190 (368)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~~~ 190 (368)
.... .....|..|...++++.|++ ...+|++|+.||+|++||++..+...
T Consensus 120 ~~rn-----------------------------k~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~~ 170 (839)
T KOG0269|consen 120 SIRN-----------------------------KLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKSKS 170 (839)
T ss_pred cccc-----------------------------hhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeecccccc
Confidence 3110 01123344999999999998 45689999999999999999999999
Q ss_pred EeecCCCceEEEEeCCCC--eEEEEcCCCeEEEEEcCCCCCCcccccceeeccccccEEEEEEcCCCCEEEEecCCCcEE
Q 047325 191 SVSAHDDAVNSVVSSSEG--LIFTGSADGTVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSSSRSIVYCGSSDGLVN 268 (368)
Q Consensus 191 ~~~~~~~~v~~~~~~~~~--~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~ 268 (368)
++.+....|+.+.|+|.. +++++...|.+.+||+|...+ +...+..|.++|.++.|+|++.+||+|+.|+.|+
T Consensus 171 t~~~nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r-----~~~k~~AH~GpV~c~nwhPnr~~lATGGRDK~vk 245 (839)
T KOG0269|consen 171 TFRSNSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDR-----CEKKLTAHNGPVLCLNWHPNREWLATGGRDKMVK 245 (839)
T ss_pred cccccchhhhceeeccCCCceEEEecCCceEEEeeccCchh-----HHHHhhcccCceEEEeecCCCceeeecCCCccEE
Confidence 999988999999999865 999999999999999997654 7778889999999999999999999999999999
Q ss_pred EEeCCCccccceeeeccceEE--EEEEeC-CCEEEEee--CCCeEEEEecCCCceeeeEeeeccccCeeEEEEecCCeee
Q 047325 269 FWEREKQLSHGGVLKGHKLAV--LCLAAA-GKLVFSGS--ADKTICVWRRDGAIHTCLSVLTGHTGPVKCLAVEEDRDSS 343 (368)
Q Consensus 269 i~d~~~~~~~~~~~~~~~~~~--~~~~~~-~~~l~~~~--~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~ 343 (368)
|||....+......-....++ +.+.|. ...|++++ .|-.|+|||+..+ ..+..++..|...++.++|......
T Consensus 246 iWd~t~~~~~~~~tInTiapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRP-YIP~~t~~eH~~~vt~i~W~~~d~~- 323 (839)
T KOG0269|consen 246 IWDMTDSRAKPKHTINTIAPVGRVKWRPARSYHLATCSMVVDTSVHVWDVRRP-YIPYATFLEHTDSVTGIAWDSGDRI- 323 (839)
T ss_pred EEeccCCCccceeEEeecceeeeeeeccCccchhhhhhccccceEEEEeeccc-cccceeeeccCccccceeccCCCce-
Confidence 999986544322222223334 455565 34567665 4888999999765 4667888999999999999763332
Q ss_pred ecCCcceEEEEEeeCCcccccc
Q 047325 344 SSTSSCAQRWIVYSGSLDKSDD 365 (368)
Q Consensus 344 ~~~~~~~~~w~l~sg~~D~~v~ 365 (368)
.+.+++.|++|.
T Consensus 324 ----------~l~s~sKD~tv~ 335 (839)
T KOG0269|consen 324 ----------NLWSCSKDGTVL 335 (839)
T ss_pred ----------eeEeecCccHHH
Confidence 688999998874
No 102
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=2.6e-29 Score=184.38 Aligned_cols=242 Identities=20% Similarity=0.290 Sum_probs=188.7
Q ss_pred cCCCCCeeEEEEe--CCEEEEEeCCCeEEEEeecCCCccccccCCccccceeeeeccCCCCceeEecccceeeeeecCCC
Q 047325 79 KASSGLVKAIVIS--GEKIFTGHQDGKIRVWKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDA 156 (368)
Q Consensus 79 ~~~~~~v~~~~~~--~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (368)
..|...|..+..+ |.+|+|++.|++|+|+..+++... .....+.||.++
T Consensus 8 t~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~s-----------------------------~ll~~L~Gh~GP 58 (299)
T KOG1332|consen 8 TQHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQS-----------------------------KLLAELTGHSGP 58 (299)
T ss_pred hhhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCCc-----------------------------eeeeEecCCCCC
Confidence 4677777776655 999999999999999999877631 123346679999
Q ss_pred EeEEEEcC--CCCEEEEEeCCCcEEEEEccCCe--EEEEeecCCCceEEEEeCCCC---eEEEEcCCCeEEEEEcCCCCC
Q 047325 157 VSCMSLDQ--DCGLLYTASWDRTFKVWRISDSK--CLESVSAHDDAVNSVVSSSEG---LIFTGSADGTVKVWKREQHGK 229 (368)
Q Consensus 157 v~~~~~~~--~~~~l~~~~~d~~i~iwd~~~~~--~~~~~~~~~~~v~~~~~~~~~---~l~~~~~dg~i~i~d~~~~~~ 229 (368)
|..++|.. -|.+|++++.||.|.||.-..++ .......|...|++++|.|.+ .|++++.||.|.+.+.+..+.
T Consensus 59 Vwqv~wahPk~G~iLAScsYDgkVIiWke~~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~ 138 (299)
T KOG1332|consen 59 VWKVAWAHPKFGTILASCSYDGKVIIWKEENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGG 138 (299)
T ss_pred eeEEeecccccCcEeeEeecCceEEEEecCCCchhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCC
Confidence 99999965 78999999999999999987774 345566799999999999987 899999999999999987622
Q ss_pred CcccccceeeccccccEEEEEEcCC---C-----------CEEEEecCCCcEEEEeCCCcc-ccceeeeccceEEEEEE-
Q 047325 230 GTKHSLAQTLLKQECAVTALVVSSS---R-----------SIVYCGSSDGLVNFWEREKQL-SHGGVLKGHKLAVLCLA- 293 (368)
Q Consensus 230 ~~~~~~~~~~~~~~~~i~~~~~~~~---~-----------~~l~~~~~dg~i~i~d~~~~~-~~~~~~~~~~~~~~~~~- 293 (368)
....+....|.-.+++++|.|. | +.|++|+.|..|+||+..... .....+.+|...+..++
T Consensus 139 ---w~t~ki~~aH~~GvnsVswapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~dwVRDVAw 215 (299)
T KOG1332|consen 139 ---WTTSKIVFAHEIGVNSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEGHKDWVRDVAW 215 (299)
T ss_pred ---ccchhhhhccccccceeeecCcCCCccccccCcccccceeeccCCccceeeeecCCcchhhhhhhhhcchhhhhhhh
Confidence 1233445678899999999985 4 579999999999999988743 23345889999885554
Q ss_pred -eC----CCEEEEeeCCCeEEEEecCCCc-eeeeEeeeccccCeeEEEEecCCeeeecCCcceEE
Q 047325 294 -AA----GKLVFSGSADKTICVWRRDGAI-HTCLSVLTGHTGPVKCLAVEEDRDSSSSTSSCAQR 352 (368)
Q Consensus 294 -~~----~~~l~~~~~dg~i~iw~~~~~~-~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~ 352 (368)
|. ..+|++++.||++.||..+... .-....++....++..+.|+..|.+|+.++++.++
T Consensus 216 aP~~gl~~s~iAS~SqDg~viIwt~~~e~e~wk~tll~~f~~~~w~vSWS~sGn~LaVs~GdNkv 280 (299)
T KOG1332|consen 216 APSVGLPKSTIASCSQDGTVIIWTKDEEYEPWKKTLLEEFPDVVWRVSWSLSGNILAVSGGDNKV 280 (299)
T ss_pred ccccCCCceeeEEecCCCcEEEEEecCccCcccccccccCCcceEEEEEeccccEEEEecCCcEE
Confidence 43 4589999999999999776321 11223344467789999999999987776666555
No 103
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.97 E-value=1.3e-28 Score=198.46 Aligned_cols=271 Identities=17% Similarity=0.306 Sum_probs=211.9
Q ss_pred eeccCcCCcEEEEEecCC--EEEEccCCCcEEEEcCCccee-----cc--cCCCCCeeEEEEe--CCEEEEEeCCCeEEE
Q 047325 38 GSLVREEGHIYSLAASKD--LLYTGSDSKNIRVWKNLKEFC-----GF--KASSGLVKAIVIS--GEKIFTGHQDGKIRV 106 (368)
Q Consensus 38 ~~~~~h~~~i~~~~~~~~--~l~s~~~dg~i~iw~~~~~~~-----~~--~~~~~~v~~~~~~--~~~l~s~~~dg~i~v 106 (368)
.....|..-|.++..+.. .++||+. |-|+|||+..... .+ ......|.++... |+.|++|+.-.++.|
T Consensus 413 ~~tL~HGEvVcAvtIS~~trhVyTgGk-gcVKVWdis~pg~k~PvsqLdcl~rdnyiRSckL~pdgrtLivGGeastlsi 491 (705)
T KOG0639|consen 413 INTLAHGEVVCAVTISNPTRHVYTGGK-GCVKVWDISQPGNKSPVSQLDCLNRDNYIRSCKLLPDGRTLIVGGEASTLSI 491 (705)
T ss_pred hhhhccCcEEEEEEecCCcceeEecCC-CeEEEeeccCCCCCCccccccccCcccceeeeEecCCCceEEeccccceeee
Confidence 345567777888888744 8888886 7799999875422 11 1234456665554 889999999999999
Q ss_pred EeecCCCccccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcCCCCEEEEEeCCCcEEEEEccCC
Q 047325 107 WKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCGLLYTASWDRTFKVWRISDS 186 (368)
Q Consensus 107 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~ 186 (368)
||+............. ..-....++.+||.+..+++..||.|.|||+...
T Consensus 492 WDLAapTprikaelts------------------------------sapaCyALa~spDakvcFsccsdGnI~vwDLhnq 541 (705)
T KOG0639|consen 492 WDLAAPTPRIKAELTS------------------------------SAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQ 541 (705)
T ss_pred eeccCCCcchhhhcCC------------------------------cchhhhhhhcCCccceeeeeccCCcEEEEEcccc
Confidence 9998776544333211 2234567899999999999999999999999999
Q ss_pred eEEEEeecCCCceEEEEeCCCC-eEEEEcCCCeEEEEEcCCCCCCcccccceeeccccccEEEEEEcCCCCEEEEecCCC
Q 047325 187 KCLESVSAHDDAVNSVVSSSEG-LIFTGSADGTVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSSSRSIVYCGSSDG 265 (368)
Q Consensus 187 ~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg 265 (368)
..++.|++|...+.||.++++| .|.+|+-|.+|+.||++...+ .........|.++-++|++.+|+.|-+++
T Consensus 542 ~~VrqfqGhtDGascIdis~dGtklWTGGlDntvRcWDlregrq-------lqqhdF~SQIfSLg~cP~~dWlavGMens 614 (705)
T KOG0639|consen 542 TLVRQFQGHTDGASCIDISKDGTKLWTGGLDNTVRCWDLREGRQ-------LQQHDFSSQIFSLGYCPTGDWLAVGMENS 614 (705)
T ss_pred eeeecccCCCCCceeEEecCCCceeecCCCccceeehhhhhhhh-------hhhhhhhhhheecccCCCccceeeecccC
Confidence 9999999999999999999999 999999999999999997632 11223457799999999999999999999
Q ss_pred cEEEEeCCCccccceeeeccceEEEEEE--eCCCEEEEeeCCCeEEEEecCCCceeeeEeeeccccCeeEEEEecCCeee
Q 047325 266 LVNFWEREKQLSHGGVLKGHKLAVLCLA--AAGKLVFSGSADKTICVWRRDGAIHTCLSVLTGHTGPVKCLAVEEDRDSS 343 (368)
Q Consensus 266 ~i~i~d~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~ 343 (368)
.+.+.......+ ..+.-|...|+++. +.|+++++.+.|+.+..|...-+ ..++..+ -..+|.++..+.|.+
T Consensus 615 ~vevlh~skp~k--yqlhlheScVLSlKFa~cGkwfvStGkDnlLnawrtPyG--asiFqsk-E~SsVlsCDIS~ddk-- 687 (705)
T KOG0639|consen 615 NVEVLHTSKPEK--YQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYG--ASIFQSK-ESSSVLSCDISFDDK-- 687 (705)
T ss_pred cEEEEecCCccc--eeecccccEEEEEEecccCceeeecCchhhhhhccCccc--cceeecc-ccCcceeeeeccCce--
Confidence 999888776544 45667888886654 57999999999999999965544 5555544 467899999999999
Q ss_pred ecCCcceEEEEEeeCCcccc
Q 047325 344 SSTSSCAQRWIVYSGSLDKS 363 (368)
Q Consensus 344 ~~~~~~~~~w~l~sg~~D~~ 363 (368)
+++|||.|+.
T Consensus 688 ----------yIVTGSGdkk 697 (705)
T KOG0639|consen 688 ----------YIVTGSGDKK 697 (705)
T ss_pred ----------EEEecCCCcc
Confidence 5666666644
No 104
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.97 E-value=1e-27 Score=181.28 Aligned_cols=242 Identities=17% Similarity=0.212 Sum_probs=182.6
Q ss_pred ceecccCCCCCeeEEEEe---CCEEEEEeCCCeEEEEeecCCCccccccCCccccceeeeeccCCCCceeEecccceeee
Q 047325 74 EFCGFKASSGLVKAIVIS---GEKIFTGHQDGKIRVWKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALW 150 (368)
Q Consensus 74 ~~~~~~~~~~~v~~~~~~---~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (368)
....-......|.+|+|+ ...+++++.||+||+|+++......... .
T Consensus 19 d~ev~~pP~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~ka------------------------------~ 68 (347)
T KOG0647|consen 19 DYEVPNPPEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVPKA------------------------------Q 68 (347)
T ss_pred ceecCCCcccchheeEeccccCceEEecccCCceEEEEEecCCcccchh------------------------------h
Confidence 333445567789999998 4577799999999999998742211111 1
Q ss_pred eecCCCEeEEEEcCCCCEEEEEeCCCcEEEEEccCCeEEEEeecCCCceEEEEeCCCC---eEEEEcCCCeEEEEEcCCC
Q 047325 151 IRHSDAVSCMSLDQDCGLLYTASWDRTFKVWRISDSKCLESVSAHDDAVNSVVSSSEG---LIFTGSADGTVKVWKREQH 227 (368)
Q Consensus 151 ~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~---~l~~~~~dg~i~i~d~~~~ 227 (368)
..|.++|.+++|+.+|..+++|+.|+.+++||+.+++ +..+..|..+|.++.|-+.. .|++|+.|.+|+.||.|..
T Consensus 69 ~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S~Q-~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~ 147 (347)
T KOG0647|consen 69 QSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLASGQ-VSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSS 147 (347)
T ss_pred hccCCCeEEEEEccCCceEEeeccCCceEEEEccCCC-eeeeeecccceeEEEEecCCCcceeEecccccceeecccCCC
Confidence 1289999999999999999999999999999999995 55677899999999997765 7999999999999999975
Q ss_pred CCCcccccceeeccccccEEEEEEcCCCCEEEEecCCCcEEEEeCCCccccceee---eccceEEEEEEeCCCEEEEeeC
Q 047325 228 GKGTKHSLAQTLLKQECAVTALVVSSSRSIVYCGSSDGLVNFWEREKQLSHGGVL---KGHKLAVLCLAAAGKLVFSGSA 304 (368)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~---~~~~~~~~~~~~~~~~l~~~~~ 304 (368)
.. +..+. ....+.++.. ...+++.+..+..|.+|+++++....... .....+.+++..|.+..+.|+-
T Consensus 148 ~p------v~t~~-LPeRvYa~Dv--~~pm~vVata~r~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~alGsi 218 (347)
T KOG0647|consen 148 NP------VATLQ-LPERVYAADV--LYPMAVVATAERHIAVYNLENPPTEFKRIESPLKWQTRCVACFQDKDGFALGSI 218 (347)
T ss_pred Ce------eeeee-ccceeeehhc--cCceeEEEecCCcEEEEEcCCCcchhhhhcCcccceeeEEEEEecCCceEeeee
Confidence 32 33222 3345555554 34678889999999999998654332221 2234445556667777799999
Q ss_pred CCeEEEEecCCCceeeeEeeecccc---------CeeEEEEecCCeeeecCCcceEEEEEeeCCcccccccC
Q 047325 305 DKTICVWRRDGAIHTCLSVLTGHTG---------PVKCLAVEEDRDSSSSTSSCAQRWIVYSGSLDKSDDDV 367 (368)
Q Consensus 305 dg~i~iw~~~~~~~~~~~~~~~h~~---------~v~~l~~~~~~~~~~~~~~~~~~w~l~sg~~D~~v~i~ 367 (368)
+|.+.|..++.+....-.+++.|.. +|++|+|+|... .|+|.|.||++..|
T Consensus 219 EGrv~iq~id~~~~~~nFtFkCHR~~~~~~~~VYaVNsi~FhP~hg------------tlvTaGsDGtf~FW 278 (347)
T KOG0647|consen 219 EGRVAIQYIDDPNPKDNFTFKCHRSTNSVNDDVYAVNSIAFHPVHG------------TLVTAGSDGTFSFW 278 (347)
T ss_pred cceEEEEecCCCCccCceeEEEeccCCCCCCceEEecceEeecccc------------eEEEecCCceEEEe
Confidence 9999999998764455566776763 588999999888 67788888887766
No 105
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.97 E-value=4.3e-29 Score=190.93 Aligned_cols=251 Identities=20% Similarity=0.306 Sum_probs=199.4
Q ss_pred CCCCeeEEEEe--CCEEEEEeCCCeEEEEeecCCCccccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEe
Q 047325 81 SSGLVKAIVIS--GEKIFTGHQDGKIRVWKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVS 158 (368)
Q Consensus 81 ~~~~v~~~~~~--~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 158 (368)
....+.|..|+ |+||++|+.||-|.+|+..+++.......... ..+.-+...|.
T Consensus 212 ~KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAq------------------------d~fMMmd~aVl 267 (508)
T KOG0275|consen 212 QKSHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQ------------------------DNFMMMDDAVL 267 (508)
T ss_pred cccchhheeeCCCCceEeeccccceeeeehhccchhhhhhhhhhh------------------------cceeecccceE
Confidence 44557777887 89999999999999999999876544333221 12334889999
Q ss_pred EEEEcCCCCEEEEEeCCCcEEEEEccCCeEEEEee-cCCCceEEEEeCCCC-eEEEEcCCCeEEEEEcCCCCCCcccccc
Q 047325 159 CMSLDQDCGLLYTASWDRTFKVWRISDSKCLESVS-AHDDAVNSVVSSSEG-LIFTGSADGTVKVWKREQHGKGTKHSLA 236 (368)
Q Consensus 159 ~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~-~~~~~v~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~ 236 (368)
|+.|+.|...+++|+.||.|++|.+++|.+++.+. +|...|+|+.|+.|+ .+++++.|.++++.-+..+ +++
T Consensus 268 ci~FSRDsEMlAsGsqDGkIKvWri~tG~ClRrFdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSG------K~L 341 (508)
T KOG0275|consen 268 CISFSRDSEMLASGSQDGKIKVWRIETGQCLRRFDRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSG------KCL 341 (508)
T ss_pred EEeecccHHHhhccCcCCcEEEEEEecchHHHHhhhhhccCeeEEEEccCcchhhcccccceEEEeccccc------hhH
Confidence 99999999999999999999999999999999997 799999999999999 9999999999999999877 468
Q ss_pred eeeccccccEEEEEEcCCCCEEEEecCCCcEEEEeCCCccccceeee-ccceEEEEEEe---CCCEEEEeeCCCeEEEEe
Q 047325 237 QTLLKQECAVTALVVSSSRSIVYCGSSDGLVNFWEREKQLSHGGVLK-GHKLAVLCLAA---AGKLVFSGSADKTICVWR 312 (368)
Q Consensus 237 ~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~-~~~~~~~~~~~---~~~~l~~~~~dg~i~iw~ 312 (368)
..+.+|.+.|+...|.++|+.+++++.||+|++|+.++.++...... +...++..+.+ +...++++...++|+|-+
T Consensus 342 KEfrGHsSyvn~a~ft~dG~~iisaSsDgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn 421 (508)
T KOG0275|consen 342 KEFRGHSSYVNEATFTDDGHHIISASSDGTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMN 421 (508)
T ss_pred HHhcCccccccceEEcCCCCeEEEecCCccEEEecCcchhhhhhccCCCCcccceeEEEcCCCCceEEEEcCCCeEEEEe
Confidence 89999999999999999999999999999999999998776643332 23444544443 677889999999999998
Q ss_pred cCCCceeeeEeeec---cccCeeEEEEecCCeeeecCCcc--eEEEEEeeCCccccc
Q 047325 313 RDGAIHTCLSVLTG---HTGPVKCLAVEEDRDSSSSTSSC--AQRWIVYSGSLDKSD 364 (368)
Q Consensus 313 ~~~~~~~~~~~~~~---h~~~v~~l~~~~~~~~~~~~~~~--~~~w~l~sg~~D~~v 364 (368)
+.. +.++.+.. ..+...+...+|.|.++-....+ ..-+.+.+|..+.++
T Consensus 422 ~qG---QvVrsfsSGkREgGdFi~~~lSpkGewiYcigED~vlYCF~~~sG~LE~tl 475 (508)
T KOG0275|consen 422 MQG---QVVRSFSSGKREGGDFINAILSPKGEWIYCIGEDGVLYCFSVLSGKLERTL 475 (508)
T ss_pred ccc---eEEeeeccCCccCCceEEEEecCCCcEEEEEccCcEEEEEEeecCceeeee
Confidence 765 45555532 33456677899999976555443 333455566655543
No 106
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.96 E-value=1.6e-28 Score=198.39 Aligned_cols=245 Identities=16% Similarity=0.219 Sum_probs=184.5
Q ss_pred eecccCCCCCeeEEEEe--CCEEEEEeCCCeEEEEeecCCCccccccCCccccceeeeeccCCCCceeEecccceeeeee
Q 047325 75 FCGFKASSGLVKAIVIS--GEKIFTGHQDGKIRVWKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIR 152 (368)
Q Consensus 75 ~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (368)
...+++|+..|.+++++ |.+|++|+.|.+|++||+.............. ..
T Consensus 160 Ei~l~hgtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~---------------------------P~ 212 (641)
T KOG0772|consen 160 EIQLKHGTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQ---------------------------PC 212 (641)
T ss_pred eEeccCCceEEEEeeecCCCceeeeccccceEEEEecccccccchhhhccC---------------------------cc
Confidence 33578899999999998 88999999999999999987654332211111 11
Q ss_pred cCCCEeEEEEcCCCCEEEEEeCCCcEEEEEccCCeEEE------------EeecCCCceEEEEeCCCC--eEEEEcCCCe
Q 047325 153 HSDAVSCMSLDQDCGLLYTASWDRTFKVWRISDSKCLE------------SVSAHDDAVNSVVSSSEG--LIFTGSADGT 218 (368)
Q Consensus 153 ~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~------------~~~~~~~~v~~~~~~~~~--~l~~~~~dg~ 218 (368)
....|++++|++.+..|++.+.....+|+|-...+... .-++|...++|.+|+|.. .+++++.||+
T Consensus 213 E~h~i~sl~ys~Tg~~iLvvsg~aqakl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~Dgt 292 (641)
T KOG0772|consen 213 ETHQINSLQYSVTGDQILVVSGSAQAKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGT 292 (641)
T ss_pred cccccceeeecCCCCeEEEEecCcceeEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCc
Confidence 45678999999999999999988999999964433322 235788899999999988 8999999999
Q ss_pred EEEEEcCCCCCCcccccceeeccccccEEEEEEcCCCCEEEEecCCCcEEEEeCCCccc--cceeeeccce----EEEEE
Q 047325 219 VKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSSSRSIVYCGSSDGLVNFWEREKQLS--HGGVLKGHKL----AVLCL 292 (368)
Q Consensus 219 i~i~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~--~~~~~~~~~~----~~~~~ 292 (368)
+++||+................+..-+++.++|+|+++.+|+|+.||.|.+|+..+... .......|.. ..+.|
T Consensus 293 lRiWdv~~~k~q~qVik~k~~~g~Rv~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~F 372 (641)
T KOG0772|consen 293 LRIWDVNNTKSQLQVIKTKPAGGKRVPVTSCAWNRDGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISF 372 (641)
T ss_pred EEEEecCCchhheeEEeeccCCCcccCceeeecCCCcchhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEe
Confidence 99999987643222111222234556789999999999999999999999999864322 2223345544 44667
Q ss_pred EeCCCEEEEeeCCCeEEEEecCCCceeeeEeeecc--ccCeeEEEEecCCeeeecCC
Q 047325 293 AAAGKLVFSGSADKTICVWRRDGAIHTCLSVLTGH--TGPVKCLAVEEDRDSSSSTS 347 (368)
Q Consensus 293 ~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h--~~~v~~l~~~~~~~~~~~~~ 347 (368)
+++|++|++-+.|+++++||++..+ +++....+- .-+-+.++|||+.+++.++.
T Consensus 373 S~dg~~LlSRg~D~tLKvWDLrq~k-kpL~~~tgL~t~~~~tdc~FSPd~kli~TGt 428 (641)
T KOG0772|consen 373 SYDGNYLLSRGFDDTLKVWDLRQFK-KPLNVRTGLPTPFPGTDCCFSPDDKLILTGT 428 (641)
T ss_pred ccccchhhhccCCCceeeeeccccc-cchhhhcCCCccCCCCccccCCCceEEEecc
Confidence 7799999999999999999998753 455555443 34578999999999887764
No 107
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=5.8e-27 Score=177.75 Aligned_cols=249 Identities=16% Similarity=0.226 Sum_probs=190.1
Q ss_pred cCCCCCeeEEEEe--CCEEEEEeCCCeEEEEeecCCCccccccCCccccceeeeeccCCCCceeEecccceeeeeecCCC
Q 047325 79 KASSGLVKAIVIS--GEKIFTGHQDGKIRVWKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDA 156 (368)
Q Consensus 79 ~~~~~~v~~~~~~--~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (368)
.+|..-|.++.|+ |+++++|+.|++|+|||.+........ ...+..|.+.
T Consensus 10 s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~----------------------------Ts~Wrah~~S 61 (361)
T KOG2445|consen 10 SGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSC----------------------------TSSWRAHDGS 61 (361)
T ss_pred cCCcceeeeeeecccCceeeeccCCCcEEEEeccCCCCceEE----------------------------eeeEEecCCc
Confidence 4688889999988 999999999999999998655432221 2345669999
Q ss_pred EeEEEEcC--CCCEEEEEeCCCcEEEEEccC---------CeEEEEeecCCCceEEEEeCCCC---eEEEEcCCCeEEEE
Q 047325 157 VSCMSLDQ--DCGLLYTASWDRTFKVWRISD---------SKCLESVSAHDDAVNSVVSSSEG---LIFTGSADGTVKVW 222 (368)
Q Consensus 157 v~~~~~~~--~~~~l~~~~~d~~i~iwd~~~---------~~~~~~~~~~~~~v~~~~~~~~~---~l~~~~~dg~i~i~ 222 (368)
|..+.|.+ -|+.+++++.|+++.||.=.. -....++......|+++.|.|.. +|++++.||.+|||
T Consensus 62 i~rV~WAhPEfGqvvA~cS~Drtv~iWEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIY 141 (361)
T KOG2445|consen 62 IWRVVWAHPEFGQVVATCSYDRTVSIWEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIY 141 (361)
T ss_pred EEEEEecCccccceEEEEecCCceeeeeecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEE
Confidence 99999965 588999999999999997521 12345666677899999999975 89999999999999
Q ss_pred EcCCCCCCcccccceeec-------cccccEEEEEEcCC---CCEEEEecCC-----CcEEEEeCCCcc---ccceeeec
Q 047325 223 KREQHGKGTKHSLAQTLL-------KQECAVTALVVSSS---RSIVYCGSSD-----GLVNFWEREKQL---SHGGVLKG 284 (368)
Q Consensus 223 d~~~~~~~~~~~~~~~~~-------~~~~~i~~~~~~~~---~~~l~~~~~d-----g~i~i~d~~~~~---~~~~~~~~ 284 (368)
+.-.........+...+. .+..+..|+.|+|. ..+|+.|+.+ +.++||...... .....+.+
T Consensus 142 EA~dp~nLs~W~Lq~Ei~~~~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d 221 (361)
T KOG2445|consen 142 EAPDPMNLSQWTLQHEIQNVIDPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPD 221 (361)
T ss_pred ecCCccccccchhhhhhhhccCCcccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCC
Confidence 986654444444433333 46677889999873 4688888876 478898866432 22345568
Q ss_pred cceEEEEEE--eC----CCEEEEeeCCCeEEEEecCCC------------------ceeeeEeeeccccCeeEEEEecCC
Q 047325 285 HKLAVLCLA--AA----GKLVFSGSADKTICVWRRDGA------------------IHTCLSVLTGHTGPVKCLAVEEDR 340 (368)
Q Consensus 285 ~~~~~~~~~--~~----~~~l~~~~~dg~i~iw~~~~~------------------~~~~~~~~~~h~~~v~~l~~~~~~ 340 (368)
|..+|.+++ |+ ..+|++++.|| |+||++... .-+.+..+..|.++|..+.|+-.|
T Consensus 222 ~~dpI~di~wAPn~Gr~y~~lAvA~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmtG 300 (361)
T KOG2445|consen 222 HTDPIRDISWAPNIGRSYHLLAVATKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMTG 300 (361)
T ss_pred CCCcceeeeeccccCCceeeEEEeecCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEeeee
Confidence 888886655 43 45899999999 999998631 124456678999999999999999
Q ss_pred eeeecCCcceEEEEEeeCCcccccccCC
Q 047325 341 DSSSSTSSCAQRWIVYSGSLDKSDDDVH 368 (368)
Q Consensus 341 ~~~~~~~~~~~~w~l~sg~~D~~v~i~h 368 (368)
. .|.+.|.||+||+|.
T Consensus 301 t------------iLsStGdDG~VRLWk 316 (361)
T KOG2445|consen 301 T------------ILSSTGDDGCVRLWK 316 (361)
T ss_pred e------------EEeecCCCceeeehh
Confidence 9 789999999999984
No 108
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.96 E-value=1.5e-28 Score=193.20 Aligned_cols=240 Identities=21% Similarity=0.290 Sum_probs=190.6
Q ss_pred CceeeeccCcCCcEEEEEecCC--EEEEccCCCcEEEEcCCc--ceecccCCCCCeeEEEEe-C-CEEEEEeCCCeEEEE
Q 047325 34 NGLIGSLVREEGHIYSLAASKD--LLYTGSDSKNIRVWKNLK--EFCGFKASSGLVKAIVIS-G-EKIFTGHQDGKIRVW 107 (368)
Q Consensus 34 ~~~~~~~~~h~~~i~~~~~~~~--~l~s~~~dg~i~iw~~~~--~~~~~~~~~~~v~~~~~~-~-~~l~s~~~dg~i~vw 107 (368)
..++.+|.|-.+.|+++.|+.+ .+++++.|+.+++|++.. ...++.+|...|+++.|. + ..+++|+.|.+|+.|
T Consensus 209 ~~~~~tLaGs~g~it~~d~d~~~~~~iAas~d~~~r~Wnvd~~r~~~TLsGHtdkVt~ak~~~~~~~vVsgs~DRtiK~W 288 (459)
T KOG0288|consen 209 SELISTLAGSLGNITSIDFDSDNKHVIAASNDKNLRLWNVDSLRLRHTLSGHTDKVTAAKFKLSHSRVVSGSADRTIKLW 288 (459)
T ss_pred hhhhhhhhccCCCcceeeecCCCceEEeecCCCceeeeeccchhhhhhhcccccceeeehhhccccceeeccccchhhhh
Confidence 5678889999999999999854 888999999999999874 466899999999999998 3 349999999999999
Q ss_pred eecCCCccccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcCCCCEEEEEeCCCcEEEEEccCCe
Q 047325 108 KISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCGLLYTASWDRTFKVWRISDSK 187 (368)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~ 187 (368)
|+....+..... ..+.+..|... ...+++|-.|+.|++||.++..
T Consensus 289 Dl~k~~C~kt~l---------------------------------~~S~cnDI~~~--~~~~~SgH~DkkvRfwD~Rs~~ 333 (459)
T KOG0288|consen 289 DLQKAYCSKTVL---------------------------------PGSQCNDIVCS--ISDVISGHFDKKVRFWDIRSAD 333 (459)
T ss_pred hhhhhheecccc---------------------------------ccccccceEec--ceeeeecccccceEEEeccCCc
Confidence 998865433332 22344555554 4578899999999999999999
Q ss_pred EEEEeecCCCceEEEEeCCCC-eEEEEcCCCeEEEEEcCCCCCCcccccceeeccccccEEEEEEcCCCCEEEEecCCCc
Q 047325 188 CLESVSAHDDAVNSVVSSSEG-LIFTGSADGTVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSSSRSIVYCGSSDGL 266 (368)
Q Consensus 188 ~~~~~~~~~~~v~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~ 266 (368)
+....+.+. .|+++..++++ .+.+++.|..+.+.|+++..-.......... .....+.+.|+|++.|+++|+.||.
T Consensus 334 ~~~sv~~gg-~vtSl~ls~~g~~lLsssRDdtl~viDlRt~eI~~~~sA~g~k--~asDwtrvvfSpd~~YvaAGS~dgs 410 (459)
T KOG0288|consen 334 KTRSVPLGG-RVTSLDLSMDGLELLSSSRDDTLKVIDLRTKEIRQTFSAEGFK--CASDWTRVVFSPDGSYVAAGSADGS 410 (459)
T ss_pred eeeEeecCc-ceeeEeeccCCeEEeeecCCCceeeeecccccEEEEeeccccc--cccccceeEECCCCceeeeccCCCc
Confidence 999998765 89999999999 8888899999999999976431111111111 2234889999999999999999999
Q ss_pred EEEEeCCCccccceeeeccce-EEEEEEe--CCCEEEEeeCCCeEEEE
Q 047325 267 VNFWEREKQLSHGGVLKGHKL-AVLCLAA--AGKLVFSGSADKTICVW 311 (368)
Q Consensus 267 i~i~d~~~~~~~~~~~~~~~~-~~~~~~~--~~~~l~~~~~dg~i~iw 311 (368)
|+||++.+++........+.. .|++++| .|..|++++.++.+.+|
T Consensus 411 v~iW~v~tgKlE~~l~~s~s~~aI~s~~W~~sG~~Llsadk~~~v~lW 458 (459)
T KOG0288|consen 411 VYIWSVFTGKLEKVLSLSTSNAAITSLSWNPSGSGLLSADKQKAVTLW 458 (459)
T ss_pred EEEEEccCceEEEEeccCCCCcceEEEEEcCCCchhhcccCCcceEec
Confidence 999999987766444333333 4666555 68999999999999999
No 109
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.96 E-value=1.7e-28 Score=189.92 Aligned_cols=247 Identities=16% Similarity=0.207 Sum_probs=192.9
Q ss_pred cccccCCCceeeeccCcCCcEEEEEecCCEEEEccCCCcEEEEcCCcce-ecccCCCCCeeEEEEe--CCEEEEEeCCCe
Q 047325 27 FEENLPQNGLIGSLVREEGHIYSLAASKDLLYTGSDSKNIRVWKNLKEF-CGFKASSGLVKAIVIS--GEKIFTGHQDGK 103 (368)
Q Consensus 27 ~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~l~s~~~dg~i~iw~~~~~~-~~~~~~~~~v~~~~~~--~~~l~s~~~dg~ 103 (368)
...++.+.....++..|.+.|..|+++.+.+++++.|.+|+.|...... .++. -...+..+.-. ++.++|++. .
T Consensus 92 kiWnlsqR~~~~~f~AH~G~V~Gi~v~~~~~~tvgdDKtvK~wk~~~~p~~til-g~s~~~gIdh~~~~~~FaTcGe--~ 168 (433)
T KOG0268|consen 92 KIWNLSQRECIRTFKAHEGLVRGICVTQTSFFTVGDDKTVKQWKIDGPPLHTIL-GKSVYLGIDHHRKNSVFATCGE--Q 168 (433)
T ss_pred EEEehhhhhhhheeecccCceeeEEecccceEEecCCcceeeeeccCCcceeee-ccccccccccccccccccccCc--e
Confidence 3456777888899999999999999999999999999999999876532 2222 23344455544 667888875 5
Q ss_pred EEEEeecCCCccccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcCCC-CEEEEEeCCCcEEEEE
Q 047325 104 IRVWKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDC-GLLYTASWDRTFKVWR 182 (368)
Q Consensus 104 i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~iwd 182 (368)
|.|||.+...+...... -.+.|.++.|+|.. ..|++|+.|+.|.+||
T Consensus 169 i~IWD~~R~~Pv~smsw--------------------------------G~Dti~svkfNpvETsILas~~sDrsIvLyD 216 (433)
T KOG0268|consen 169 IDIWDEQRDNPVSSMSW--------------------------------GADSISSVKFNPVETSILASCASDRSIVLYD 216 (433)
T ss_pred eeecccccCCccceeec--------------------------------CCCceeEEecCCCcchheeeeccCCceEEEe
Confidence 89999987665444433 45678999999954 5777788999999999
Q ss_pred ccCCeEEEEeecCCCceEEEEeCCCC-eEEEEcCCCeEEEEEcCCCCCCcccccceeeccccccEEEEEEcCCCCEEEEe
Q 047325 183 ISDSKCLESVSAHDDAVNSVVSSSEG-LIFTGSADGTVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSSSRSIVYCG 261 (368)
Q Consensus 183 ~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~ 261 (368)
++++.+++.+. -...-+.|+|+|++ .+++|++|..++.||++.... ++....+|.+.|..++|+|.|+-+++|
T Consensus 217 ~R~~~Pl~KVi-~~mRTN~IswnPeafnF~~a~ED~nlY~~DmR~l~~-----p~~v~~dhvsAV~dVdfsptG~Efvsg 290 (433)
T KOG0268|consen 217 LRQASPLKKVI-LTMRTNTICWNPEAFNFVAANEDHNLYTYDMRNLSR-----PLNVHKDHVSAVMDVDFSPTGQEFVSG 290 (433)
T ss_pred cccCCccceee-eeccccceecCccccceeeccccccceehhhhhhcc-----cchhhcccceeEEEeccCCCcchhccc
Confidence 99999988765 34456789999977 889999999999999996643 677788999999999999999999999
Q ss_pred cCCCcEEEEeCCCcccccee--eeccceEEEEEEeCCCEEEEeeCCCeEEEEecC
Q 047325 262 SSDGLVNFWEREKQLSHGGV--LKGHKLAVLCLAAAGKLVFSGSADKTICVWRRD 314 (368)
Q Consensus 262 ~~dg~i~i~d~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~ 314 (368)
+.|.+|+||..+.+...... ..-.......++.|.+++++||+|+.|++|.-.
T Consensus 291 syDksIRIf~~~~~~SRdiYhtkRMq~V~~Vk~S~Dskyi~SGSdd~nvRlWka~ 345 (433)
T KOG0268|consen 291 SYDKSIRIFPVNHGHSRDIYHTKRMQHVFCVKYSMDSKYIISGSDDGNVRLWKAK 345 (433)
T ss_pred cccceEEEeecCCCcchhhhhHhhhheeeEEEEeccccEEEecCCCcceeeeecc
Confidence 99999999998865433211 111222334556699999999999999999753
No 110
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.96 E-value=2.1e-27 Score=189.62 Aligned_cols=265 Identities=21% Similarity=0.313 Sum_probs=207.1
Q ss_pred EccCC-CcEEEEcCCcce--ecccCC-CCCeeEE-EEeCCEEEEEeC-CCeEEEEeecCCCccccccCCccccceeeeec
Q 047325 59 TGSDS-KNIRVWKNLKEF--CGFKAS-SGLVKAI-VISGEKIFTGHQ-DGKIRVWKISPKNQSVHKRAGTLPTLKDIFKS 132 (368)
Q Consensus 59 s~~~d-g~i~iw~~~~~~--~~~~~~-~~~v~~~-~~~~~~l~s~~~-dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~ 132 (368)
+++.| .++.+||+.++. ..+++- ...-.++ ...+++++++.. -..|.+|.+..........
T Consensus 12 ssS~d~~~~~~~dl~TGt~~~~ykg~~~a~~~sl~~l~~~yllsaq~~rp~l~vw~i~k~~~~~q~~------------- 78 (476)
T KOG0646|consen 12 SSSFDPINCIVWDLRTGTSLLQYKGSYLAQAASLTALNNEYLLSAQLKRPLLHVWEILKKDQVVQYI------------- 78 (476)
T ss_pred ccCCCCcceeEEecCCCceeEEecCcccccchhhhhhchhheeeecccCccccccccCchhhhhhhc-------------
Confidence 44444 459999988653 334432 1111112 123567777654 4468899887665433111
Q ss_pred cCCCCceeEecccceeeeeecCCCEeEEEEcCCCCEEEEEeCCCcEEEEEccCCeEEEEeecCCCceEEEEeCCCC-eEE
Q 047325 133 SIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCGLLYTASWDRTFKVWRISDSKCLESVSAHDDAVNSVVSSSEG-LIF 211 (368)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~ 211 (368)
--.++|.+++-+|+|.+|+.|+..|.|++|.+.+|..+..+.+|-..|+|+.|+.|+ +|+
T Consensus 79 -------------------v~Pg~v~al~s~n~G~~l~ag~i~g~lYlWelssG~LL~v~~aHYQ~ITcL~fs~dgs~ii 139 (476)
T KOG0646|consen 79 -------------------VLPGPVHALASSNLGYFLLAGTISGNLYLWELSSGILLNVLSAHYQSITCLKFSDDGSHII 139 (476)
T ss_pred -------------------ccccceeeeecCCCceEEEeecccCcEEEEEeccccHHHHHHhhccceeEEEEeCCCcEEE
Confidence 156789999999999999999899999999999999999999999999999999999 999
Q ss_pred EEcCCCeEEEEEcCCC---CCCcccccceeeccccccEEEEEEcCC--CCEEEEecCCCcEEEEeCCCccccceeeeccc
Q 047325 212 TGSADGTVKVWKREQH---GKGTKHSLAQTLLKQECAVTALVVSSS--RSIVYCGSSDGLVNFWEREKQLSHGGVLKGHK 286 (368)
Q Consensus 212 ~~~~dg~i~i~d~~~~---~~~~~~~~~~~~~~~~~~i~~~~~~~~--~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~ 286 (368)
+|+.||.|.+|++... .......+...+..|.-+|+.+...+. ..+|++++.|.++++||+..+..+......-.
T Consensus 140 TgskDg~V~vW~l~~lv~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti~fp~s 219 (476)
T KOG0646|consen 140 TGSKDGAVLVWLLTDLVSADNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLTITFPSS 219 (476)
T ss_pred ecCCCccEEEEEEEeecccccCCCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccceeeEEEecCCc
Confidence 9999999999987432 122244567788899999999998775 35899999999999999999988877777777
Q ss_pred eEEEEEEeCCCEEEEeeCCCeEEEEecCCCc--------------eeeeEeeecccc--CeeEEEEecCCeeeecCCcce
Q 047325 287 LAVLCLAAAGKLVFSGSADKTICVWRRDGAI--------------HTCLSVLTGHTG--PVKCLAVEEDRDSSSSTSSCA 350 (368)
Q Consensus 287 ~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~--------------~~~~~~~~~h~~--~v~~l~~~~~~~~~~~~~~~~ 350 (368)
...+.++|-++.+++|+.+|.|.+.++.... ...+..+.+|.+ +|+|++.+-||.
T Consensus 220 i~av~lDpae~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~Dgt--------- 290 (476)
T KOG0646|consen 220 IKAVALDPAERVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDGT--------- 290 (476)
T ss_pred ceeEEEcccccEEEecCCcceEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEEEecCcc---------
Confidence 7778888999999999999999998874322 234566778988 999999999999
Q ss_pred EEEEEeeCCcccccccC
Q 047325 351 QRWIVYSGSLDKSDDDV 367 (368)
Q Consensus 351 ~~w~l~sg~~D~~v~i~ 367 (368)
+|++|+.||+|+||
T Consensus 291 ---lLlSGd~dg~VcvW 304 (476)
T KOG0646|consen 291 ---LLLSGDEDGKVCVW 304 (476)
T ss_pred ---EEEeeCCCCCEEEE
Confidence 78888888888888
No 111
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=5.7e-27 Score=177.79 Aligned_cols=259 Identities=18% Similarity=0.295 Sum_probs=190.8
Q ss_pred cCcCCcEEEEEec--CCEEEEccCCCcEEEEcCCcc------eecccCCCCCeeEEEEe----CCEEEEEeCCCeEEEEe
Q 047325 41 VREEGHIYSLAAS--KDLLYTGSDSKNIRVWKNLKE------FCGFKASSGLVKAIVIS----GEKIFTGHQDGKIRVWK 108 (368)
Q Consensus 41 ~~h~~~i~~~~~~--~~~l~s~~~dg~i~iw~~~~~------~~~~~~~~~~v~~~~~~----~~~l~s~~~dg~i~vw~ 108 (368)
.+|.+-|.++.|+ |+.+|||+.|++|+|||.... ....+.|.+.|..+.|. |+.+++++.|+++.||.
T Consensus 10 s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iWE 89 (361)
T KOG2445|consen 10 SGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIWE 89 (361)
T ss_pred cCCcceeeeeeecccCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCceeeee
Confidence 4788999999886 889999999999999996532 33567899999999997 89999999999999998
Q ss_pred ecCCCccccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcC--CCCEEEEEeCCCcEEEEEccCC
Q 047325 109 ISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQ--DCGLLYTASWDRTFKVWRISDS 186 (368)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~d~~i~iwd~~~~ 186 (368)
-...+...... +-.+...+......|+++.|.| -|-.+++++.||.++||+....
T Consensus 90 E~~~~~~~~~~-----------------------~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp 146 (361)
T KOG2445|consen 90 EQEKSEEAHGR-----------------------RWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDP 146 (361)
T ss_pred ecccccccccc-----------------------eeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCc
Confidence 65222111000 0112233445778999999999 4668999999999999987543
Q ss_pred e------EEEEee-------cCCCceEEEEeCCCC----eEEEEcCC-----CeEEEEEcCCCCCCcccccceeeccccc
Q 047325 187 K------CLESVS-------AHDDAVNSVVSSSEG----LIFTGSAD-----GTVKVWKREQHGKGTKHSLAQTLLKQEC 244 (368)
Q Consensus 187 ~------~~~~~~-------~~~~~v~~~~~~~~~----~l~~~~~d-----g~i~i~d~~~~~~~~~~~~~~~~~~~~~ 244 (368)
- ...+++ .+..+..|+.|+|.. +|++|+.+ +.++||...... .+......+..|..
T Consensus 147 ~nLs~W~Lq~Ei~~~~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~--rKw~kva~L~d~~d 224 (361)
T KOG2445|consen 147 MNLSQWTLQHEIQNVIDPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENG--RKWLKVAELPDHTD 224 (361)
T ss_pred cccccchhhhhhhhccCCcccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCc--ceeeeehhcCCCCC
Confidence 2 222232 456778899999865 67777665 489999887553 23344566779999
Q ss_pred cEEEEEEcCC----CCEEEEecCCCcEEEEeCCCcc-------------------ccceeeeccceEEEEEEe--CCCEE
Q 047325 245 AVTALVVSSS----RSIVYCGSSDGLVNFWEREKQL-------------------SHGGVLKGHKLAVLCLAA--AGKLV 299 (368)
Q Consensus 245 ~i~~~~~~~~----~~~l~~~~~dg~i~i~d~~~~~-------------------~~~~~~~~~~~~~~~~~~--~~~~l 299 (368)
+|+.++|.|+ -.+||+++.|| |+||.++... .....+..|...+-.+.+ .|..|
T Consensus 225 pI~di~wAPn~Gr~y~~lAvA~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmtGtiL 303 (361)
T KOG2445|consen 225 PIRDISWAPNIGRSYHLLAVATKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMTGTIL 303 (361)
T ss_pred cceeeeeccccCCceeeEEEeecCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEeeeeeEE
Confidence 9999999995 35899999999 9999987311 122345678888866666 49999
Q ss_pred EEeeCCCeEEEEecCC-CceeeeEeee
Q 047325 300 FSGSADKTICVWRRDG-AIHTCLSVLT 325 (368)
Q Consensus 300 ~~~~~dg~i~iw~~~~-~~~~~~~~~~ 325 (368)
.+.+.||.||+|...- ...++...++
T Consensus 304 sStGdDG~VRLWkany~n~~kC~sv~~ 330 (361)
T KOG2445|consen 304 SSTGDDGCVRLWKANYNNLWKCTSVLK 330 (361)
T ss_pred eecCCCceeeehhhhhhhhheeeeEEe
Confidence 9999999999997542 2234444443
No 112
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=1.9e-28 Score=207.06 Aligned_cols=225 Identities=18% Similarity=0.262 Sum_probs=187.0
Q ss_pred CCEEEEccCCCcEEEEcCCc-----ceecccCCCCCeeEEEEe---CCEEEEEeCCCeEEEEeecCCCccccccCCcccc
Q 047325 54 KDLLYTGSDSKNIRVWKNLK-----EFCGFKASSGLVKAIVIS---GEKIFTGHQDGKIRVWKISPKNQSVHKRAGTLPT 125 (368)
Q Consensus 54 ~~~l~s~~~dg~i~iw~~~~-----~~~~~~~~~~~v~~~~~~---~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~ 125 (368)
.++|||++..|.|.+||+.+ .+..|..|...++++.|+ ..+|++|+.||+|++||++..+.....
T Consensus 100 ~NlIAT~s~nG~i~vWdlnk~~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~~t~------- 172 (839)
T KOG0269|consen 100 SNLIATCSTNGVISVWDLNKSIRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKSKSTF------- 172 (839)
T ss_pred hhhheeecCCCcEEEEecCccccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeecccccccc-------
Confidence 45999999999999999875 345789999999999998 789999999999999999877643332
Q ss_pred ceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcC-CCCEEEEEeCCCcEEEEEccCC-eEEEEeecCCCceEEEE
Q 047325 126 LKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQ-DCGLLYTASWDRTFKVWRISDS-KCLESVSAHDDAVNSVV 203 (368)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~iwd~~~~-~~~~~~~~~~~~v~~~~ 203 (368)
.+..+.|++++|+| .+..|+++...|.+++||++.. ++...+.+|.++|.|+.
T Consensus 173 -------------------------~~nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~n 227 (839)
T KOG0269|consen 173 -------------------------RSNSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDRCEKKLTAHNGPVLCLN 227 (839)
T ss_pred -------------------------cccchhhhceeeccCCCceEEEecCCceEEEeeccCchhHHHHhhcccCceEEEe
Confidence 23678899999999 5678999999999999999875 45678889999999999
Q ss_pred eCCCC-eEEEEcCCCeEEEEEcCCCCCCcccccceeeccccccEEEEEEcCCCC-EEEEec--CCCcEEEEeCCCccccc
Q 047325 204 SSSEG-LIFTGSADGTVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSSSRS-IVYCGS--SDGLVNFWEREKQLSHG 279 (368)
Q Consensus 204 ~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~--~dg~i~i~d~~~~~~~~ 279 (368)
|+|++ +||+|+.|+.|+|||...... ..........++.++.|-|... .|++++ .|-.|+|||++.+..+.
T Consensus 228 whPnr~~lATGGRDK~vkiWd~t~~~~-----~~~~tInTiapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRPYIP~ 302 (839)
T KOG0269|consen 228 WHPNREWLATGGRDKMVKIWDMTDSRA-----KPKHTINTIAPVGRVKWRPARSYHLATCSMVVDTSVHVWDVRRPYIPY 302 (839)
T ss_pred ecCCCceeeecCCCccEEEEeccCCCc-----cceeEEeecceeeeeeeccCccchhhhhhccccceEEEEeeccccccc
Confidence 99988 999999999999999976432 1222334557899999999765 555554 46789999999999999
Q ss_pred eeeeccceEEEEEEeC---CCEEEEeeCCCeEEEEecCC
Q 047325 280 GVLKGHKLAVLCLAAA---GKLVFSGSADKTICVWRRDG 315 (368)
Q Consensus 280 ~~~~~~~~~~~~~~~~---~~~l~~~~~dg~i~iw~~~~ 315 (368)
..+..|...+..+.|+ ...+.+++.||+|..-.++.
T Consensus 303 ~t~~eH~~~vt~i~W~~~d~~~l~s~sKD~tv~qh~~kn 341 (839)
T KOG0269|consen 303 ATFLEHTDSVTGIAWDSGDRINLWSCSKDGTVLQHLFKN 341 (839)
T ss_pred eeeeccCccccceeccCCCceeeEeecCccHHHHhhhhc
Confidence 9999999999888885 46889999999987655443
No 113
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.96 E-value=1.4e-27 Score=197.75 Aligned_cols=270 Identities=17% Similarity=0.223 Sum_probs=198.6
Q ss_pred EEEEccCCCcEEEEcCCc--------ceecccCCCCCeeEEEEe--CCEEEEEeCCCeEEEEeecCCCccccccCCcccc
Q 047325 56 LLYTGSDSKNIRVWKNLK--------EFCGFKASSGLVKAIVIS--GEKIFTGHQDGKIRVWKISPKNQSVHKRAGTLPT 125 (368)
Q Consensus 56 ~l~s~~~dg~i~iw~~~~--------~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~ 125 (368)
+|+.+.+||.|.++|..+ ++..+..|.+.|..+.|. ...|++++.|.++++||++......
T Consensus 66 iLavadE~G~i~l~dt~~~~fr~ee~~lk~~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s~l~G--------- 136 (720)
T KOG0321|consen 66 ILAVADEDGGIILFDTKSIVFRLEERQLKKPLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTSRLVG--------- 136 (720)
T ss_pred eEEEecCCCceeeecchhhhcchhhhhhcccccccceeEeeccCCCceeEEEccCCceeeeeeeccceeec---------
Confidence 899999999999999753 244567899999999998 4589999999999999999876422
Q ss_pred ceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcCC-CCEEEEEeCCCcEEEEEccCCe-----------------
Q 047325 126 LKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQD-CGLLYTASWDRTFKVWRISDSK----------------- 187 (368)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~d~~i~iwd~~~~~----------------- 187 (368)
..++.||...|.+++|.|. ...|++|+.||.|.|||++-..
T Consensus 137 ---------------------~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~ 195 (720)
T KOG0321|consen 137 ---------------------GRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNT 195 (720)
T ss_pred ---------------------ceeecccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccC
Confidence 2245679999999999994 5588999999999999996432
Q ss_pred ----------EEEEeecCCC----ceEEEEeCCCCeEEEEcC-CCeEEEEEcCCCCCCcccccce--eeccc---cccEE
Q 047325 188 ----------CLESVSAHDD----AVNSVVSSSEGLIFTGSA-DGTVKVWKREQHGKGTKHSLAQ--TLLKQ---ECAVT 247 (368)
Q Consensus 188 ----------~~~~~~~~~~----~v~~~~~~~~~~l~~~~~-dg~i~i~d~~~~~~~~~~~~~~--~~~~~---~~~i~ 247 (368)
.+..-+++.. .|+.+.|-.+..|++++. |+.|++||++.........+.. .+..+ ...+.
T Consensus 196 ~ptpskp~~kr~~k~kA~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~ 275 (720)
T KOG0321|consen 196 APTPSKPLKKRIRKWKAASNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQV 275 (720)
T ss_pred CCCCCchhhccccccccccCceeeeeEEEEEeccceeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeE
Confidence 0111122333 345566666668888887 9999999999765422222222 12222 45688
Q ss_pred EEEEcCCCCEEEEecCCCcEEEEeCCCc-cccceeeeccceE---E-EEEEeCCCEEEEeeCCCeEEEEecCCCceeeeE
Q 047325 248 ALVVSSSRSIVYCGSSDGLVNFWEREKQ-LSHGGVLKGHKLA---V-LCLAAAGKLVFSGSADKTICVWRRDGAIHTCLS 322 (368)
Q Consensus 248 ~~~~~~~~~~l~~~~~dg~i~i~d~~~~-~~~~~~~~~~~~~---~-~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~ 322 (368)
++.....|.+|++.+.|+.|++|++.+. ..+...+.++... + .+++|++.+|++|+.|...++|.+.... ....
T Consensus 276 nL~lDssGt~L~AsCtD~sIy~ynm~s~s~sP~~~~sg~~~~sf~vks~lSpd~~~l~SgSsd~~ayiw~vs~~e-~~~~ 354 (720)
T KOG0321|consen 276 NLILDSSGTYLFASCTDNSIYFYNMRSLSISPVAEFSGKLNSSFYVKSELSPDDCSLLSGSSDEQAYIWVVSSPE-APPA 354 (720)
T ss_pred EEEecCCCCeEEEEecCCcEEEEeccccCcCchhhccCcccceeeeeeecCCCCceEeccCCCcceeeeeecCcc-CChh
Confidence 8888888999999999999999998853 2233334443322 2 5678999999999999999999998763 4556
Q ss_pred eeeccccCeeEEEEecCCeeeecCCcceEEEEEeeCCcccccccC
Q 047325 323 VLTGHTGPVKCLAVEEDRDSSSSTSSCAQRWIVYSGSLDKSDDDV 367 (368)
Q Consensus 323 ~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~w~l~sg~~D~~v~i~ 367 (368)
.+.+|.-.|++++|.|..-. -++|+++|-.++||
T Consensus 355 ~l~Ght~eVt~V~w~pS~~t-----------~v~TcSdD~~~kiW 388 (720)
T KOG0321|consen 355 LLLGHTREVTTVRWLPSATT-----------PVATCSDDFRVKIW 388 (720)
T ss_pred hhhCcceEEEEEeeccccCC-----------CceeeccCcceEEE
Confidence 67899999999999876432 34555666666555
No 114
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.96 E-value=1.7e-26 Score=198.82 Aligned_cols=265 Identities=17% Similarity=0.229 Sum_probs=209.3
Q ss_pred cCcCCcEEEEEec--CCEEEEccCCCcEEEEcCCcc---eecccCCCCCeeEEEEeCCEEEEEeCCCeEEEEeecCCCcc
Q 047325 41 VREEGHIYSLAAS--KDLLYTGSDSKNIRVWKNLKE---FCGFKASSGLVKAIVISGEKIFTGHQDGKIRVWKISPKNQS 115 (368)
Q Consensus 41 ~~h~~~i~~~~~~--~~~l~s~~~dg~i~iw~~~~~---~~~~~~~~~~v~~~~~~~~~l~s~~~dg~i~vw~~~~~~~~ 115 (368)
..|++.-+.++|+ |++|++++.||.|++|+.... ......+...|.+++..+++|++|+.+++|.+|.+..++..
T Consensus 10 yaht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P~ti~~~g~~v~~ia~~s~~f~~~s~~~tv~~y~fps~~~~ 89 (933)
T KOG1274|consen 10 YAHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEEEPETIDISGELVSSIACYSNHFLTGSEQNTVLRYKFPSGEED 89 (933)
T ss_pred hhccCceEEEEEcCCCCEEEEecCCCceEEeecCCcccCCchhhccCceeEEEeecccceEEeeccceEEEeeCCCCCcc
Confidence 4688888888886 559999999999999986532 23334488899999999899999999999999999887642
Q ss_pred ccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcCCCCEEEEEeCCCcEEEEEccCCeEEEEeecC
Q 047325 116 VHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCGLLYTASWDRTFKVWRISDSKCLESVSAH 195 (368)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~ 195 (368)
. .+...+-++++++++.+|++++.|+.|-.|++.++.+......+++|
T Consensus 90 ~--------------------------------iL~Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh 137 (933)
T KOG1274|consen 90 T--------------------------------ILARFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQEKVLRGH 137 (933)
T ss_pred c--------------------------------eeeeeeccceEEEEecCCcEEEeecCceeEEEEeccccchheeeccc
Confidence 1 12226678999999999999999999999999999999999999999
Q ss_pred CCceEEEEeCCCC-eEEEEcCCCeEEEEEcCCCCCCcccccce-eeccc-cccEEEEEEcCCCCEEEEecCCCcEEEEeC
Q 047325 196 DDAVNSVVSSSEG-LIFTGSADGTVKVWKREQHGKGTKHSLAQ-TLLKQ-ECAVTALVVSSSRSIVYCGSSDGLVNFWER 272 (368)
Q Consensus 196 ~~~v~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~-~~~~~-~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~ 272 (368)
+++|.++.++|++ .|++.+-||.|++||+..+.......-+. ..... ...+..++|+|++..++..+.|+.|++|+.
T Consensus 138 ~apVl~l~~~p~~~fLAvss~dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r 217 (933)
T KOG1274|consen 138 DAPVLQLSYDPKGNFLAVSSCDGKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSR 217 (933)
T ss_pred CCceeeeeEcCCCCEEEEEecCceEEEEEcccchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEcc
Confidence 9999999999999 99999999999999998653211111111 11111 456778999999888888999999999998
Q ss_pred CCccccceeeecc---ceEEEEEEeCCCEEEEeeCCCeEEEEecCCCceeeeEeeeccccCeeEEEEecCCeee
Q 047325 273 EKQLSHGGVLKGH---KLAVLCLAAAGKLVFSGSADKTICVWRRDGAIHTCLSVLTGHTGPVKCLAVEEDRDSS 343 (368)
Q Consensus 273 ~~~~~~~~~~~~~---~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~ 343 (368)
............+ ...++.|+|+|+|||+++.||.|.|||+++- .. ......|.+++|.|+...+
T Consensus 218 ~~we~~f~Lr~~~~ss~~~~~~wsPnG~YiAAs~~~g~I~vWnv~t~--~~----~~~~~~Vc~~aw~p~~n~i 285 (933)
T KOG1274|consen 218 KGWELQFKLRDKLSSSKFSDLQWSPNGKYIAASTLDGQILVWNVDTH--ER----HEFKRAVCCEAWKPNANAI 285 (933)
T ss_pred CCceeheeecccccccceEEEEEcCCCcEEeeeccCCcEEEEecccc--hh----ccccceeEEEecCCCCCee
Confidence 8766554333222 2445788899999999999999999999872 11 2234679999999987754
No 115
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.96 E-value=7.7e-27 Score=198.92 Aligned_cols=302 Identities=19% Similarity=0.293 Sum_probs=232.4
Q ss_pred cccccCCCceeeeccCcCCcEEEEEecCC--EEEEccCCCcEEEEcCC--cceecccCCCCCeeEEEEe--CC-EEEEEe
Q 047325 27 FEENLPQNGLIGSLVREEGHIYSLAASKD--LLYTGSDSKNIRVWKNL--KEFCGFKASSGLVKAIVIS--GE-KIFTGH 99 (368)
Q Consensus 27 ~~~~~~~~~~~~~~~~h~~~i~~~~~~~~--~l~s~~~dg~i~iw~~~--~~~~~~~~~~~~v~~~~~~--~~-~l~s~~ 99 (368)
..-++..++.+.+++++...|+++..+|- .+|.|..+|+|.++|+. +.+..|+...+.|++++|. |+ .+++|+
T Consensus 185 ql~Nvrt~K~v~~f~~~~s~IT~ieqsPaLDVVaiG~~~G~ViifNlK~dkil~sFk~d~g~VtslSFrtDG~p~las~~ 264 (910)
T KOG1539|consen 185 QLWNVRTGKVVYTFQEFFSRITAIEQSPALDVVAIGLENGTVIIFNLKFDKILMSFKQDWGRVTSLSFRTDGNPLLASGR 264 (910)
T ss_pred EEEEeccCcEEEEecccccceeEeccCCcceEEEEeccCceEEEEEcccCcEEEEEEccccceeEEEeccCCCeeEEecc
Confidence 34567889999999999999999998875 99999999999999986 5567777777999999998 55 677777
Q ss_pred CCCeEEEEeecCCCccccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcCCCCEEEEEeCCCcEE
Q 047325 100 QDGKIRVWKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCGLLYTASWDRTFK 179 (368)
Q Consensus 100 ~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~ 179 (368)
..|.+.+||++..+....... .|.+.|..+.|.|....+++++.|+.++
T Consensus 265 ~~G~m~~wDLe~kkl~~v~~n-------------------------------ah~~sv~~~~fl~~epVl~ta~~DnSlk 313 (910)
T KOG1539|consen 265 SNGDMAFWDLEKKKLINVTRN-------------------------------AHYGSVTGATFLPGEPVLVTAGADNSLK 313 (910)
T ss_pred CCceEEEEEcCCCeeeeeeec-------------------------------cccCCcccceecCCCceEeeccCCCcee
Confidence 889999999998775444332 2889999999999999999999999999
Q ss_pred EEEccC--C--eEEEEeecCCCceEEEEeCC-CC-eEEEEcCCCeEEEEEcCCCCCC-----------------------
Q 047325 180 VWRISD--S--KCLESVSAHDDAVNSVVSSS-EG-LIFTGSADGTVKVWKREQHGKG----------------------- 230 (368)
Q Consensus 180 iwd~~~--~--~~~~~~~~~~~~v~~~~~~~-~~-~l~~~~~dg~i~i~d~~~~~~~----------------------- 230 (368)
+|=..+ | +.++.-.+|..+..|+.|.. ++ .+.+++.|++++.+++......
T Consensus 314 ~~vfD~~dg~pR~LR~R~GHs~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~ 393 (910)
T KOG1539|consen 314 VWVFDSGDGVPRLLRSRGGHSAPPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKL 393 (910)
T ss_pred EEEeeCCCCcchheeeccCCCCCchheeeeccCcEEEEecccCcchhhhhhhHHHHhHhhcccccccccccccccchhhh
Confidence 885543 3 34555668888888998874 44 7888888888877765321100
Q ss_pred ------------------------------------------cccccceeeccccccEEEEEEcCCCCEEEEecCCCcEE
Q 047325 231 ------------------------------------------TKHSLAQTLLKQECAVTALVVSSSRSIVYCGSSDGLVN 268 (368)
Q Consensus 231 ------------------------------------------~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~ 268 (368)
.-......+......+++++.++.|++.+.|...|.|-
T Consensus 394 k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~CGNF~~IG~S~G~Id 473 (910)
T KOG1539|consen 394 KLPPIVEFAFENAREKEWDNVITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSFCGNFVFIGYSKGTID 473 (910)
T ss_pred cCCcceeeecccchhhhhcceeEEecCcceEEEEeccCcccccEEecCccccccCcceEEEEEeccCceEEEeccCCeEE
Confidence 00000011111235688999999999999999999999
Q ss_pred EEeCCCcccccee--eeccceEEEEEEeC--CCEEEEeeCCCeEEEEecCCCc---------------------------
Q 047325 269 FWEREKQLSHGGV--LKGHKLAVLCLAAA--GKLVFSGSADKTICVWRRDGAI--------------------------- 317 (368)
Q Consensus 269 i~d~~~~~~~~~~--~~~~~~~~~~~~~~--~~~l~~~~~dg~i~iw~~~~~~--------------------------- 317 (368)
+|+++++...... ...|..++..++.| ++.+++++.+|.+.+||+....
T Consensus 474 ~fNmQSGi~r~sf~~~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l~~~l~l~~~~~~iv~hr~s~l~a~~~ 553 (910)
T KOG1539|consen 474 RFNMQSGIHRKSFGDSPAHKGEVTGLAVDGTNRLLVSAGADGILKFWDFKKKVLKKSLRLGSSITGIVYHRVSDLLAIAL 553 (910)
T ss_pred EEEcccCeeecccccCccccCceeEEEecCCCceEEEccCcceEEEEecCCcceeeeeccCCCcceeeeeehhhhhhhhc
Confidence 9999988665433 35799999999887 5679999999999999975432
Q ss_pred ------------eeeeEeeeccccCeeEEEEecCCeeeecCC--cceEEEEEeeCC
Q 047325 318 ------------HTCLSVLTGHTGPVKCLAVEEDRDSSSSTS--SCAQRWIVYSGS 359 (368)
Q Consensus 318 ------------~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~--~~~~~w~l~sg~ 359 (368)
.+.++.+.+|.+.|++++|||||+++++++ +.+++|.+.||.
T Consensus 554 ddf~I~vvD~~t~kvvR~f~gh~nritd~~FS~DgrWlisasmD~tIr~wDlpt~~ 609 (910)
T KOG1539|consen 554 DDFSIRVVDVVTRKVVREFWGHGNRITDMTFSPDGRWLISASMDSTIRTWDLPTGT 609 (910)
T ss_pred CceeEEEEEchhhhhhHHhhccccceeeeEeCCCCcEEEEeecCCcEEEEeccCcc
Confidence 123344568999999999999999766654 456777776664
No 116
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=1.8e-27 Score=181.60 Aligned_cols=247 Identities=19% Similarity=0.296 Sum_probs=206.3
Q ss_pred EEEEccCCCcEEEEcCCcceecccCCCCCeeEEEEe--CCEEEEEeCCCeEEEEeecCCCccccccCCccccceeeeecc
Q 047325 56 LLYTGSDSKNIRVWKNLKEFCGFKASSGLVKAIVIS--GEKIFTGHQDGKIRVWKISPKNQSVHKRAGTLPTLKDIFKSS 133 (368)
Q Consensus 56 ~l~s~~~dg~i~iw~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (368)
.+++.-.+++++. +....+.+|...|..++.. ...+.+++.|.+.+||.++++.+...
T Consensus 126 rivssFk~~t~~~----~lvre~~GHkDGiW~Vaa~~tqpi~gtASADhTA~iWs~Esg~CL~~---------------- 185 (481)
T KOG0300|consen 126 RIVSSFKDGTVKF----RLVRELEGHKDGIWHVAADSTQPICGTASADHTARIWSLESGACLAT---------------- 185 (481)
T ss_pred hheeeecCCceeE----eehhhhcccccceeeehhhcCCcceeecccccceeEEeeccccceee----------------
Confidence 4555555555422 3345688999999999887 45888999999999999999986443
Q ss_pred CCCCceeEecccceeeeeecCCCEeEEEEcCCCCEEEEEeCCCcEEEEEc------cC----------------------
Q 047325 134 IKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCGLLYTASWDRTFKVWRI------SD---------------------- 185 (368)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~------~~---------------------- 185 (368)
|.||.+.|++++|++.+.++++++.|++-+||.. .+
T Consensus 186 ----------------Y~GH~GSVNsikfh~s~~L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d 249 (481)
T KOG0300|consen 186 ----------------YTGHTGSVNSIKFHNSGLLLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRD 249 (481)
T ss_pred ----------------ecccccceeeEEeccccceEEEccCCcchHHHHHhhcCcCCCCCCCCCCCchhhhhcccccccc
Confidence 4569999999999999999999999999999962 11
Q ss_pred ------------CeEEEEeecCCCceEEEEeCCCC-eEEEEcCCCeEEEEEcCCCCCCcccccceeeccccccEEEEEEc
Q 047325 186 ------------SKCLESVSAHDDAVNSVVSSSEG-LIFTGSADGTVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVS 252 (368)
Q Consensus 186 ------------~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 252 (368)
..++..+.+|...|.+..|...+ .+++++.|.+..+||++++ .++..+.+|....+.++-+
T Consensus 250 ~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~gg~Q~vTaSWDRTAnlwDVEtg------e~v~~LtGHd~ELtHcstH 323 (481)
T KOG0300|consen 250 TDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLAGGQQMVTASWDRTANLWDVETG------EVVNILTGHDSELTHCSTH 323 (481)
T ss_pred cccccccCCceeeeeeeeeeccccceEehhhhcCcceeeeeeccccceeeeeccC------ceeccccCcchhccccccC
Confidence 02466778899999999999888 9999999999999999987 4678889999999999999
Q ss_pred CCCCEEEEecCCCcEEEEeCCCccccceeeeccceEEEEEEeC-CCEEEEeeCCCeEEEEecCCCceeeeEeeeccccCe
Q 047325 253 SSRSIVYCGSSDGLVNFWEREKQLSHGGVLKGHKLAVLCLAAA-GKLVFSGSADKTICVWRRDGAIHTCLSVLTGHTGPV 331 (368)
Q Consensus 253 ~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v 331 (368)
|..+++++.+.|.+.++||++........+.+|...+.+..+. +..+++|++|.+|++||+++. ..++.++. ...++
T Consensus 324 ptQrLVvTsSrDtTFRLWDFReaI~sV~VFQGHtdtVTS~vF~~dd~vVSgSDDrTvKvWdLrNM-RsplATIR-tdS~~ 401 (481)
T KOG0300|consen 324 PTQRLVVTSSRDTTFRLWDFREAIQSVAVFQGHTDTVTSVVFNTDDRVVSGSDDRTVKVWDLRNM-RSPLATIR-TDSPA 401 (481)
T ss_pred CcceEEEEeccCceeEeccchhhcceeeeecccccceeEEEEecCCceeecCCCceEEEeeeccc-cCcceeee-cCCcc
Confidence 9999999999999999999998777778899999999988885 778999999999999999875 34556654 56789
Q ss_pred eEEEEecCCeeeecC
Q 047325 332 KCLAVEEDRDSSSST 346 (368)
Q Consensus 332 ~~l~~~~~~~~~~~~ 346 (368)
+.++.+..+.++|.-
T Consensus 402 NRvavs~g~~iIAiP 416 (481)
T KOG0300|consen 402 NRVAVSKGHPIIAIP 416 (481)
T ss_pred ceeEeecCCceEEec
Confidence 999999888755543
No 117
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.96 E-value=2.3e-26 Score=183.31 Aligned_cols=293 Identities=16% Similarity=0.217 Sum_probs=219.1
Q ss_pred cccCCCceeeeccCcCCcEEEEEecCC----EEEEccCCCcEEEEcCC------cceecccCCCCCeeEEEEe---CCEE
Q 047325 29 ENLPQNGLIGSLVREEGHIYSLAASKD----LLYTGSDSKNIRVWKNL------KEFCGFKASSGLVKAIVIS---GEKI 95 (368)
Q Consensus 29 ~~~~~~~~~~~~~~h~~~i~~~~~~~~----~l~s~~~dg~i~iw~~~------~~~~~~~~~~~~v~~~~~~---~~~l 95 (368)
.++...........|.++|++++|.|. ++|+|..-|+|-+||+. ..+..+..|.++|.+|.|+ ...+
T Consensus 171 l~l~~~~~~~v~kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i 250 (498)
T KOG4328|consen 171 LDLDDYRILNVAKVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQI 250 (498)
T ss_pred cccccceecceeEecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChhhe
Confidence 334444455667788999999999854 89999999999999994 3466788999999999998 5689
Q ss_pred EEEeCCCeEEEEeecCCCccccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcCCCCEEEEEeCC
Q 047325 96 FTGHQDGKIRVWKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCGLLYTASWD 175 (368)
Q Consensus 96 ~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d 175 (368)
++.+.||+|++-|++........... .-...+.++.|+.+...++.+..=
T Consensus 251 ~ssSyDGtiR~~D~~~~i~e~v~s~~------------------------------~d~~~fs~~d~~~e~~~vl~~~~~ 300 (498)
T KOG4328|consen 251 YSSSYDGTIRLQDFEGNISEEVLSLD------------------------------TDNIWFSSLDFSAESRSVLFGDNV 300 (498)
T ss_pred eeeccCceeeeeeecchhhHHHhhcC------------------------------ccceeeeeccccCCCccEEEeecc
Confidence 99999999999999877543322221 023456677888877778888777
Q ss_pred CcEEEEEccCCeE-EEEeecCCCceEEEEeCCCC--eEEEEcCCCeEEEEEcCCCCCCcccccceeeccccccEEEEEEc
Q 047325 176 RTFKVWRISDSKC-LESVSAHDDAVNSVVSSSEG--LIFTGSADGTVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVS 252 (368)
Q Consensus 176 ~~i~iwd~~~~~~-~~~~~~~~~~v~~~~~~~~~--~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 252 (368)
|...+||++++.. ...+.-|...|+.++++|-. +|++++.|++.+|||+|....... +......|...|.+..|+
T Consensus 301 G~f~~iD~R~~~s~~~~~~lh~kKI~sv~~NP~~p~~laT~s~D~T~kIWD~R~l~~K~s--p~lst~~HrrsV~sAyFS 378 (498)
T KOG4328|consen 301 GNFNVIDLRTDGSEYENLRLHKKKITSVALNPVCPWFLATASLDQTAKIWDLRQLRGKAS--PFLSTLPHRRSVNSAYFS 378 (498)
T ss_pred cceEEEEeecCCccchhhhhhhcccceeecCCCCchheeecccCcceeeeehhhhcCCCC--cceecccccceeeeeEEc
Confidence 8999999998765 66677788999999999988 999999999999999997643221 234556799999999999
Q ss_pred CCCCEEEEecCCCcEEEEeCC---Cccccceeee-ccce-----E-EEEEEeCCCEEEEeeCCCeEEEEecCCCceeeeE
Q 047325 253 SSRSIVYCGSSDGLVNFWERE---KQLSHGGVLK-GHKL-----A-VLCLAAAGKLVFSGSADKTICVWRRDGAIHTCLS 322 (368)
Q Consensus 253 ~~~~~l~~~~~dg~i~i~d~~---~~~~~~~~~~-~~~~-----~-~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~ 322 (368)
|.+-.|++.+.|..|+|||.. ...++...+. .+.. . -..|.|+..++++|-.-..|-|+|-..+ +.+.
T Consensus 379 Ps~gtl~TT~~D~~IRv~dss~~sa~~~p~~~I~Hn~~t~RwlT~fKA~W~P~~~li~vg~~~r~IDv~~~~~~--q~v~ 456 (498)
T KOG4328|consen 379 PSGGTLLTTCQDNEIRVFDSSCISAKDEPLGTIPHNNRTGRWLTPFKAAWDPDYNLIVVGRYPRPIDVFDGNGG--QMVC 456 (498)
T ss_pred CCCCceEeeccCCceEEeecccccccCCccceeeccCcccccccchhheeCCCccEEEEeccCcceeEEcCCCC--EEee
Confidence 988889999999999999974 2222222222 1111 1 1456788999999999999999976665 5555
Q ss_pred eeecccc-CeeEE-EEecCCeeeecC-CcceEEEEE
Q 047325 323 VLTGHTG-PVKCL-AVEEDRDSSSST-SSCAQRWIV 355 (368)
Q Consensus 323 ~~~~h~~-~v~~l-~~~~~~~~~~~~-~~~~~~w~l 355 (368)
.+..... .|.++ .|+|-+..++++ +..+++|++
T Consensus 457 el~~P~~~tI~~vn~~HP~~~~~~aG~~s~Gki~vf 492 (498)
T KOG4328|consen 457 ELHDPESSTIPSVNEFHPMRDTLAAGGNSSGKIYVF 492 (498)
T ss_pred eccCccccccccceeecccccceeccCCccceEEEE
Confidence 5433322 45554 899999855555 455777744
No 118
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=4.7e-26 Score=173.66 Aligned_cols=238 Identities=17% Similarity=0.208 Sum_probs=182.8
Q ss_pred cccCCCCCeeEEEEe--CCEEEEEeCCCeEEEEeecCCCccccccCCccccceeeeeccCCCCceeEecccceeeeeecC
Q 047325 77 GFKASSGLVKAIVIS--GEKIFTGHQDGKIRVWKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHS 154 (368)
Q Consensus 77 ~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (368)
.+..-...|+++.|+ |.+|++++.|.++++||..++.+...... +.
T Consensus 9 ~f~~~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~ti~s--------------------------------kk 56 (311)
T KOG1446|consen 9 VFRETNGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVKTINS--------------------------------KK 56 (311)
T ss_pred ccccCCCceeEEEecCCCCEEEEecCCCeEEEEEcCCCceeeEeec--------------------------------cc
Confidence 445567889999998 89999999999999999998875444332 44
Q ss_pred CCEeEEEEcCCCCEEEEEeC--CCcEEEEEccCCeEEEEeecCCCceEEEEeCCCC-eEEEEcCCCeEEEEEcCCCCCCc
Q 047325 155 DAVSCMSLDQDCGLLYTASW--DRTFKVWRISDSKCLESVSAHDDAVNSVVSSSEG-LIFTGSADGTVKVWKREQHGKGT 231 (368)
Q Consensus 155 ~~v~~~~~~~~~~~l~~~~~--d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~ 231 (368)
-.+..+.|....+.++.++. |.+|+..++.+.+.++.+.+|...|.+++.+|-+ .+++++.|++|++||+|....
T Consensus 57 yG~~~~~Fth~~~~~i~sStk~d~tIryLsl~dNkylRYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~c-- 134 (311)
T KOG1446|consen 57 YGVDLACFTHHSNTVIHSSTKEDDTIRYLSLHDNKYLRYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKC-- 134 (311)
T ss_pred ccccEEEEecCCceEEEccCCCCCceEEEEeecCceEEEcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCC--
Confidence 56777888776667777766 8899999999999999999999999999999988 999999999999999996522
Q ss_pred ccccceeeccccccEEEEEEcCCCCEEEEecCCCcEEEEeCCCc-cccceeee-----ccceEEEEEEeCCCEEEEeeCC
Q 047325 232 KHSLAQTLLKQECAVTALVVSSSRSIVYCGSSDGLVNFWEREKQ-LSHGGVLK-----GHKLAVLCLAAAGKLVFSGSAD 305 (368)
Q Consensus 232 ~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~-~~~~~~~~-----~~~~~~~~~~~~~~~l~~~~~d 305 (368)
.-.+.. ..-..++|+|+|-++|++.....|++||++.- +.+...+. ..+-..+.|++||++|+.+...
T Consensus 135 ----qg~l~~--~~~pi~AfDp~GLifA~~~~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~ 208 (311)
T KOG1446|consen 135 ----QGLLNL--SGRPIAAFDPEGLIFALANGSELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNA 208 (311)
T ss_pred ----ceEEec--CCCcceeECCCCcEEEEecCCCeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCC
Confidence 222222 22345789999999999998889999999853 22222222 1223447889999999999999
Q ss_pred CeEEEEecCCCceeeeEeeeccccC---eeEEEEecCCeeeecCCcceEEEEEeeCCcccccccCC
Q 047325 306 KTICVWRRDGAIHTCLSVLTGHTGP---VKCLAVEEDRDSSSSTSSCAQRWIVYSGSLDKSDDDVH 368 (368)
Q Consensus 306 g~i~iw~~~~~~~~~~~~~~~h~~~---v~~l~~~~~~~~~~~~~~~~~~w~l~sg~~D~~v~i~h 368 (368)
+.+++.|--.+ ..+.++..+... -.+.+|+||++ .+.+|+.||+|.+||
T Consensus 209 s~~~~lDAf~G--~~~~tfs~~~~~~~~~~~a~ftPds~------------Fvl~gs~dg~i~vw~ 260 (311)
T KOG1446|consen 209 SFIYLLDAFDG--TVKSTFSGYPNAGNLPLSATFTPDSK------------FVLSGSDDGTIHVWN 260 (311)
T ss_pred CcEEEEEccCC--cEeeeEeeccCCCCcceeEEECCCCc------------EEEEecCCCcEEEEE
Confidence 99999987665 466666655443 25778999999 455666666666664
No 119
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.96 E-value=2.1e-27 Score=198.46 Aligned_cols=237 Identities=24% Similarity=0.362 Sum_probs=200.4
Q ss_pred eecccCCCCCeeEEEEe-CCEEEEEeCCCeEEEEeecCCCccccccCCccccceeeeeccCCCCceeEecccceeeeeec
Q 047325 75 FCGFKASSGLVKAIVIS-GEKIFTGHQDGKIRVWKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRH 153 (368)
Q Consensus 75 ~~~~~~~~~~v~~~~~~-~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (368)
.+.+.+|...|..+++. +..++++++||++++|+-..++..... .+.+|
T Consensus 7 s~~l~gH~~DVr~v~~~~~~~i~s~sRd~t~~vw~~~~~~~l~~~------------------------------~~~~~ 56 (745)
T KOG0301|consen 7 SHELEGHKSDVRAVAVTDGVCIISGSRDGTVKVWAKKGKQYLETH------------------------------AFEGP 56 (745)
T ss_pred EEEeccCccchheeEecCCeEEeecCCCCceeeeeccCcccccce------------------------------ecccC
Confidence 45678999999999887 667999999999999998766543321 12236
Q ss_pred CCCEeE-EEEcC-CCCEEEEEeCCCcEEEEEccCCeEEEEeecCCCceEEEEeCCCCeEEEEcCCCeEEEEEcCCCCCCc
Q 047325 154 SDAVSC-MSLDQ-DCGLLYTASWDRTFKVWRISDSKCLESVSAHDDAVNSVVSSSEGLIFTGSADGTVKVWKREQHGKGT 231 (368)
Q Consensus 154 ~~~v~~-~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~ 231 (368)
.+.|.. +++.+ ++-.+++|+.|.+|.+|.+.+..++..+++|...|+++....++.+++|+.|.++++|....
T Consensus 57 ~g~i~~~i~y~e~~~~~l~~g~~D~~i~v~~~~~~~P~~~LkgH~snVC~ls~~~~~~~iSgSWD~TakvW~~~~----- 131 (745)
T KOG0301|consen 57 KGFIANSICYAESDKGRLVVGGMDTTIIVFKLSQAEPLYTLKGHKSNVCSLSIGEDGTLISGSWDSTAKVWRIGE----- 131 (745)
T ss_pred cceeeccceeccccCcceEeecccceEEEEecCCCCchhhhhccccceeeeecCCcCceEecccccceEEecchh-----
Confidence 666665 77765 45579999999999999999999999999999999999988888999999999999998864
Q ss_pred ccccceeeccccccEEEEEEcCCCCEEEEecCCCcEEEEeCCCccccceeeeccceEEEEEEe-CCCEEEEeeCCCeEEE
Q 047325 232 KHSLAQTLLKQECAVTALVVSSSRSIVYCGSSDGLVNFWEREKQLSHGGVLKGHKLAVLCLAA-AGKLVFSGSADKTICV 310 (368)
Q Consensus 232 ~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~dg~i~i 310 (368)
+...+.+|+..|.++..-|++ .+++|+.|..|++|.-. .....+.+|...|..+.. ++..+++++.||.|+.
T Consensus 132 ---l~~~l~gH~asVWAv~~l~e~-~~vTgsaDKtIklWk~~---~~l~tf~gHtD~VRgL~vl~~~~flScsNDg~Ir~ 204 (745)
T KOG0301|consen 132 ---LVYSLQGHTASVWAVASLPEN-TYVTGSADKTIKLWKGG---TLLKTFSGHTDCVRGLAVLDDSHFLSCSNDGSIRL 204 (745)
T ss_pred ---hhcccCCcchheeeeeecCCC-cEEeccCcceeeeccCC---chhhhhccchhheeeeEEecCCCeEeecCCceEEE
Confidence 466689999999999999987 88999999999999863 334678889999988886 6668999999999999
Q ss_pred EecCCCceeeeEeeeccccCeeEEEEecCCeeeecCCcceEEEEEeeCCcccccccCC
Q 047325 311 WRRDGAIHTCLSVLTGHTGPVKCLAVEEDRDSSSSTSSCAQRWIVYSGSLDKSDDDVH 368 (368)
Q Consensus 311 w~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~w~l~sg~~D~~v~i~h 368 (368)
|+++. .++.++.+|..-|.+++..+++. .++|+++|+++|||-
T Consensus 205 w~~~g---e~l~~~~ghtn~vYsis~~~~~~------------~Ivs~gEDrtlriW~ 247 (745)
T KOG0301|consen 205 WDLDG---EVLLEMHGHTNFVYSISMALSDG------------LIVSTGEDRTLRIWK 247 (745)
T ss_pred EeccC---ceeeeeeccceEEEEEEecCCCC------------eEEEecCCceEEEee
Confidence 99844 68889999999999999666666 689999999999993
No 120
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.96 E-value=1.9e-26 Score=189.78 Aligned_cols=306 Identities=15% Similarity=0.184 Sum_probs=224.8
Q ss_pred eeccCcCCcEEEEEec--CCEEEEccCCCcEEEEcCCcceeccc-CCCCCeeEEEEe---CCEEEEEeCCCeEEEEeecC
Q 047325 38 GSLVREEGHIYSLAAS--KDLLYTGSDSKNIRVWKNLKEFCGFK-ASSGLVKAIVIS---GEKIFTGHQDGKIRVWKISP 111 (368)
Q Consensus 38 ~~~~~h~~~i~~~~~~--~~~l~s~~~dg~i~iw~~~~~~~~~~-~~~~~v~~~~~~---~~~l~s~~~dg~i~vw~~~~ 111 (368)
..+.||++.|.+++.+ |..|++|+.||+||||.+.+..+... .-.+.|.|++|+ ...++++..+..+.+-+..-
T Consensus 394 lvyrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~~~d~~I~~vaw~P~~~~~vLAvA~~~~~~ivnp~~ 473 (733)
T KOG0650|consen 394 LVYRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQFDSEIRSVAWNPLSDLCVLAVAVGECVLIVNPIF 473 (733)
T ss_pred eeEeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEEeecceeEEEEecCCCCceeEEEEecCceEEeCccc
Confidence 3578999999999876 56999999999999999987765432 335589999998 33455555555566666554
Q ss_pred CCccccccCCccccceeeeec--cCCCCceeEe--------cccceeeeeecCCCEeEEEEcCCCCEEEEEeCC---CcE
Q 047325 112 KNQSVHKRAGTLPTLKDIFKS--SIKPSNYIEV--------RRHRTALWIRHSDAVSCMSLDQDCGLLYTASWD---RTF 178 (368)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~--------~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---~~i 178 (368)
+.......... .+... ...+...+.. ....+.....|...|+.+.|+..|.+|++...+ ..|
T Consensus 474 G~~~e~~~t~e-----ll~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~~~~~~V 548 (733)
T KOG0650|consen 474 GDRLEVGPTKE-----LLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPDSGNKSV 548 (733)
T ss_pred cchhhhcchhh-----hhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEeccCCCcceE
Confidence 42211111000 00000 0000000000 011134556699999999999999999998654 478
Q ss_pred EEEEccCCeEEEEeecCCCceEEEEeCCCC-eEEEEcCCCeEEEEEcCCCCCCcccccceeeccccccEEEEEEcCCCCE
Q 047325 179 KVWRISDSKCLESVSAHDDAVNSVVSSSEG-LIFTGSADGTVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSSSRSI 257 (368)
Q Consensus 179 ~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 257 (368)
.|.++...+...-|+...+.|.++.|+|.. +|++++ ...|++||+... ..+..+......|..++.+|.|..
T Consensus 549 liHQLSK~~sQ~PF~kskG~vq~v~FHPs~p~lfVaT-q~~vRiYdL~kq------elvKkL~tg~kwiS~msihp~GDn 621 (733)
T KOG0650|consen 549 LIHQLSKRKSQSPFRKSKGLVQRVKFHPSKPYLFVAT-QRSVRIYDLSKQ------ELVKKLLTGSKWISSMSIHPNGDN 621 (733)
T ss_pred EEEecccccccCchhhcCCceeEEEecCCCceEEEEe-ccceEEEehhHH------HHHHHHhcCCeeeeeeeecCCCCe
Confidence 999998777777776677889999999998 666665 458999999753 355666667778999999999999
Q ss_pred EEEecCCCcEEEEeCCCccccceeeeccceEEEEEEe--CCCEEEEeeCCCeEEEEec-------CCCceeeeEeeeccc
Q 047325 258 VYCGSSDGLVNFWEREKQLSHGGVLKGHKLAVLCLAA--AGKLVFSGSADKTICVWRR-------DGAIHTCLSVLTGHT 328 (368)
Q Consensus 258 l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~~~~~dg~i~iw~~-------~~~~~~~~~~~~~h~ 328 (368)
|+.|+.|+.+..||+.-...+...+..|...+.++++ .-.++++|+.||++.|+.- .+....++..+.+|.
T Consensus 622 li~gs~d~k~~WfDldlsskPyk~lr~H~~avr~Va~H~ryPLfas~sdDgtv~Vfhg~VY~Dl~qnpliVPlK~L~gH~ 701 (733)
T KOG0650|consen 622 LILGSYDKKMCWFDLDLSSKPYKTLRLHEKAVRSVAFHKRYPLFASGSDDGTVIVFHGMVYNDLLQNPLIVPLKRLRGHE 701 (733)
T ss_pred EEEecCCCeeEEEEcccCcchhHHhhhhhhhhhhhhhccccceeeeecCCCcEEEEeeeeehhhhcCCceEeeeeccCce
Confidence 9999999999999999777777788888888866665 4568999999999999852 233346778888997
Q ss_pred cC----eeEEEEecCCeeeecCCcceEEEEEeeCCcccccccC
Q 047325 329 GP----VKCLAVEEDRDSSSSTSSCAQRWIVYSGSLDKSDDDV 367 (368)
Q Consensus 329 ~~----v~~l~~~~~~~~~~~~~~~~~~w~l~sg~~D~~v~i~ 367 (368)
.. |.+..|+|.-. -|++++.||+||+|
T Consensus 702 ~~~~~gVLd~~wHP~qp------------WLfsAGAd~tirlf 732 (733)
T KOG0650|consen 702 KTNDLGVLDTIWHPRQP------------WLFSAGADGTIRLF 732 (733)
T ss_pred eecccceEeecccCCCc------------eEEecCCCceEEee
Confidence 66 99999999988 37788999999998
No 121
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.96 E-value=2.1e-25 Score=180.08 Aligned_cols=300 Identities=16% Similarity=0.176 Sum_probs=203.9
Q ss_pred CcEEEEEecCC-EEEEccCCCcEEEEcCCcc--eecccCCCCCeeEEEEe-CCEEEEEeCCCeEEEEeecCCCccccccC
Q 047325 45 GHIYSLAASKD-LLYTGSDSKNIRVWKNLKE--FCGFKASSGLVKAIVIS-GEKIFTGHQDGKIRVWKISPKNQSVHKRA 120 (368)
Q Consensus 45 ~~i~~~~~~~~-~l~s~~~dg~i~iw~~~~~--~~~~~~~~~~v~~~~~~-~~~l~s~~~dg~i~vw~~~~~~~~~~~~~ 120 (368)
..|.|++|.++ -++||.++|.|.||+.... .+....|.+.|.+++.- ...|++|+.|..|..||- +-+.....+.
T Consensus 247 k~Vl~v~F~engdviTgDS~G~i~Iw~~~~~~~~k~~~aH~ggv~~L~~lr~GtllSGgKDRki~~Wd~-~y~k~r~~el 325 (626)
T KOG2106|consen 247 KFVLCVTFLENGDVITGDSGGNILIWSKGTNRISKQVHAHDGGVFSLCMLRDGTLLSGGKDRKIILWDD-NYRKLRETEL 325 (626)
T ss_pred eEEEEEEEcCCCCEEeecCCceEEEEeCCCceEEeEeeecCCceEEEEEecCccEeecCccceEEeccc-cccccccccC
Confidence 45999999876 8899999999999997632 23334999999999988 668888999999999993 2222222222
Q ss_pred Cc-cccceeeeeccC------CCCcee--EecccceeeeeecCCCEeEEEEcCCCCEEEEEeCCCcEEEEEccCCeEEEE
Q 047325 121 GT-LPTLKDIFKSSI------KPSNYI--EVRRHRTALWIRHSDAVSCMSLDQDCGLLYTASWDRTFKVWRISDSKCLES 191 (368)
Q Consensus 121 ~~-~~~~~~~~~~~~------~~~~~~--~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~ 191 (368)
+. ......+..... ..+..+ .+.........+|.+....++.+|+.+++++++.|+.+++|+ ..+++.+
T Consensus 326 Pe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla~hps~~q~~T~gqdk~v~lW~--~~k~~wt 403 (626)
T KOG2106|consen 326 PEQFGPIRTVAEGKGDILVGTTRNFILQGTLENGFTLTVQGHGDELWGLATHPSKNQLLTCGQDKHVRLWN--DHKLEWT 403 (626)
T ss_pred chhcCCeeEEecCCCcEEEeeccceEEEeeecCCceEEEEecccceeeEEcCCChhheeeccCcceEEEcc--CCceeEE
Confidence 11 111111111111 111111 122233345578999999999999999999999999999999 4555544
Q ss_pred eecCCCceEEEEeCCCCeEEEEcCCCeEEEEEcCCCCCCcccccceeeccccccEEEEEEcCCCCEEEEecCCCcEEEEe
Q 047325 192 VSAHDDAVNSVVSSSEGLIFTGSADGTVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSSSRSIVYCGSSDGLVNFWE 271 (368)
Q Consensus 192 ~~~~~~~v~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d 271 (368)
.. -..++.|+.|+|.|.++.|...|...+.|.++.. .+ .......++++++|+|+|.+||.|+.|+.|++|.
T Consensus 404 ~~-~~d~~~~~~fhpsg~va~Gt~~G~w~V~d~e~~~------lv-~~~~d~~~ls~v~ysp~G~~lAvgs~d~~iyiy~ 475 (626)
T KOG2106|consen 404 KI-IEDPAECADFHPSGVVAVGTATGRWFVLDTETQD------LV-TIHTDNEQLSVVRYSPDGAFLAVGSHDNHIYIYR 475 (626)
T ss_pred EE-ecCceeEeeccCcceEEEeeccceEEEEecccce------eE-EEEecCCceEEEEEcCCCCEEEEecCCCeEEEEE
Confidence 43 4567899999999999999999999999998642 22 3333378899999999999999999999999998
Q ss_pred CCCcc-ccceeeeccceEE--EEEEeCCCE--------------------------------------------------
Q 047325 272 REKQL-SHGGVLKGHKLAV--LCLAAAGKL-------------------------------------------------- 298 (368)
Q Consensus 272 ~~~~~-~~~~~~~~~~~~~--~~~~~~~~~-------------------------------------------------- 298 (368)
+.... .....-..+..++ +.+++|+++
T Consensus 476 Vs~~g~~y~r~~k~~gs~ithLDwS~Ds~~~~~~S~d~eiLyW~~~~~~~~ts~kDvkW~t~~c~lGF~v~g~s~~t~i~ 555 (626)
T KOG2106|consen 476 VSANGRKYSRVGKCSGSPITHLDWSSDSQFLVSNSGDYEILYWKPSECKQITSVKDVKWATYTCTLGFEVFGGSDGTDIN 555 (626)
T ss_pred ECCCCcEEEEeeeecCceeEEeeecCCCceEEeccCceEEEEEccccCcccceecceeeeeeEEEEEEEEecccCCchHH
Confidence 76432 2211111122222 223334444
Q ss_pred ----------EEEeeCCCeEEEEecCCC-ceeeeEeeeccccCeeEEEEecCCeeeecCCcceEEEEEeeCCcccccccC
Q 047325 299 ----------VFSGSADKTICVWRRDGA-IHTCLSVLTGHTGPVKCLAVEEDRDSSSSTSSCAQRWIVYSGSLDKSDDDV 367 (368)
Q Consensus 299 ----------l~~~~~dg~i~iw~~~~~-~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~w~l~sg~~D~~v~i~ 367 (368)
+++|.+.|.|++|...-. ...+..++.+|+.-|++++|.-+.. .+.+.+.|.+|..|
T Consensus 556 a~~rs~~~~~lA~gdd~g~v~lf~yPc~s~rA~~he~~ghs~~vt~V~Fl~~d~------------~li~tg~D~Si~qW 623 (626)
T KOG2106|consen 556 AVARSHCEKLLASGDDFGKVHLFSYPCSSPRAPSHEYGGHSSHVTNVAFLCKDS------------HLISTGKDTSIMQW 623 (626)
T ss_pred HhhhhhhhhhhhccccCceEEEEccccCCCcccceeeccccceeEEEEEeeCCc------------eEEecCCCceEEEE
Confidence 555555555555544321 1234456678999999999998877 34444477777766
No 122
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.96 E-value=1.3e-26 Score=185.19 Aligned_cols=278 Identities=23% Similarity=0.368 Sum_probs=210.0
Q ss_pred CCccccccccCCCceeeeccCc-CCcEEEEE-ecCCEEEEccCC-CcEEEEcCCccee--cccCCCCCeeEEEEe--CCE
Q 047325 22 PGWSQFEENLPQNGLIGSLVRE-EGHIYSLA-ASKDLLYTGSDS-KNIRVWKNLKEFC--GFKASSGLVKAIVIS--GEK 94 (368)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~~~h-~~~i~~~~-~~~~~l~s~~~d-g~i~iw~~~~~~~--~~~~~~~~v~~~~~~--~~~ 94 (368)
+.|+-...++..+...-++++- ...-.++. ..+++++++... ..+.+|.+.++.+ ...--.++|.++.-+ |.+
T Consensus 16 d~~~~~~~dl~TGt~~~~ykg~~~a~~~sl~~l~~~yllsaq~~rp~l~vw~i~k~~~~~q~~v~Pg~v~al~s~n~G~~ 95 (476)
T KOG0646|consen 16 DPINCIVWDLRTGTSLLQYKGSYLAQAASLTALNNEYLLSAQLKRPLLHVWEILKKDQVVQYIVLPGPVHALASSNLGYF 95 (476)
T ss_pred CCcceeEEecCCCceeEEecCcccccchhhhhhchhheeeecccCccccccccCchhhhhhhcccccceeeeecCCCceE
Confidence 3444445555555555555544 22222222 345666666544 4788999876533 234456789999876 778
Q ss_pred EEEEeCCCeEEEEeecCCCccccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcCCCCEEEEEeC
Q 047325 95 IFTGHQDGKIRVWKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCGLLYTASW 174 (368)
Q Consensus 95 l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~ 174 (368)
|+.|+..|.|++|.+.++....... +|-..|+|+.|+.|+.+|++|+.
T Consensus 96 l~ag~i~g~lYlWelssG~LL~v~~--------------------------------aHYQ~ITcL~fs~dgs~iiTgsk 143 (476)
T KOG0646|consen 96 LLAGTISGNLYLWELSSGILLNVLS--------------------------------AHYQSITCLKFSDDGSHIITGSK 143 (476)
T ss_pred EEeecccCcEEEEEeccccHHHHHH--------------------------------hhccceeEEEEeCCCcEEEecCC
Confidence 8888899999999999998655443 39999999999999999999999
Q ss_pred CCcEEEEEcc---------CCeEEEEeecCCCceEEEEeCCCC---eEEEEcCCCeEEEEEcCCCCCCcccccceeeccc
Q 047325 175 DRTFKVWRIS---------DSKCLESVSAHDDAVNSVVSSSEG---LIFTGSADGTVKVWKREQHGKGTKHSLAQTLLKQ 242 (368)
Q Consensus 175 d~~i~iwd~~---------~~~~~~~~~~~~~~v~~~~~~~~~---~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~ 242 (368)
||.|.+|++. +-+++..+..|.-+|+++...+.+ ++++++.|.++++||+..+. +......
T Consensus 144 Dg~V~vW~l~~lv~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~-------LLlti~f 216 (476)
T KOG0646|consen 144 DGAVLVWLLTDLVSADNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGV-------LLLTITF 216 (476)
T ss_pred CccEEEEEEEeecccccCCCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccce-------eeEEEec
Confidence 9999999873 346788999999999999988775 99999999999999998762 2233345
Q ss_pred cccEEEEEEcCCCCEEEEecCCCcEEEEeCCCcc---------------ccceeeeccce--EEEE--EEeCCCEEEEee
Q 047325 243 ECAVTALVVSSSRSIVYCGSSDGLVNFWEREKQL---------------SHGGVLKGHKL--AVLC--LAAAGKLVFSGS 303 (368)
Q Consensus 243 ~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~---------------~~~~~~~~~~~--~~~~--~~~~~~~l~~~~ 303 (368)
...+.+++.+|.+..+++|+++|.|.+.++.+.. .....+.+|.. .|.| ++.||.+|++|+
T Consensus 217 p~si~av~lDpae~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLlSGd 296 (476)
T KOG0646|consen 217 PSSIKAVALDPAERVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDGTLLLSGD 296 (476)
T ss_pred CCcceeEEEcccccEEEecCCcceEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEEEecCccEEEeeC
Confidence 6789999999999999999999999998865321 11123456666 5655 556999999999
Q ss_pred CCCeEEEEecCCCceeeeEeeeccccCeeEEEEecCC
Q 047325 304 ADKTICVWRRDGAIHTCLSVLTGHTGPVKCLAVEEDR 340 (368)
Q Consensus 304 ~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~l~~~~~~ 340 (368)
.||.|+|||+... ++++++..-.++|+.+.+.|-.
T Consensus 297 ~dg~VcvWdi~S~--Q~iRtl~~~kgpVtnL~i~~~~ 331 (476)
T KOG0646|consen 297 EDGKVCVWDIYSK--QCIRTLQTSKGPVTNLQINPLE 331 (476)
T ss_pred CCCCEEEEecchH--HHHHHHhhhccccceeEeeccc
Confidence 9999999998776 7777776677899999986543
No 123
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.96 E-value=1.3e-26 Score=193.78 Aligned_cols=297 Identities=20% Similarity=0.281 Sum_probs=224.1
Q ss_pred CCceeeeccCcCCcEEEEEec---C-C-EEEEccCCCcEEEEcCC--c------------------------ce------
Q 047325 33 QNGLIGSLVREEGHIYSLAAS---K-D-LLYTGSDSKNIRVWKNL--K------------------------EF------ 75 (368)
Q Consensus 33 ~~~~~~~~~~h~~~i~~~~~~---~-~-~l~s~~~dg~i~iw~~~--~------------------------~~------ 75 (368)
....+..+.||.+.|.+++|. + + +||++|.|..||||.+. . .+
T Consensus 180 ~f~~v~el~GH~DWIrsl~f~~~~~~~~~laS~SQD~yIRiW~i~~~~~~~~~~~e~~~t~~~~~~~f~~l~~i~~~is~ 259 (764)
T KOG1063|consen 180 SFARVAELEGHTDWIRSLAFARLGGDDLLLASSSQDRYIRIWRIVLGDDEDSNEREDSLTTLSNLPVFMILEEIQYRISF 259 (764)
T ss_pred ceeEEEEeeccchhhhhhhhhccCCCcEEEEecCCceEEEEEEEEecCCccccccccccccccCCceeeeeeeEEEEEeh
Confidence 446788899999999999995 3 3 99999999999999641 0 01
Q ss_pred -ecccCCCCCeeEEEEe--CCEEEEEeCCCeEEEEeecCCCccccccCCccccceeeeeccCCCCceeEecccceeeeee
Q 047325 76 -CGFKASSGLVKAIVIS--GEKIFTGHQDGKIRVWKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIR 152 (368)
Q Consensus 76 -~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (368)
..+.+|...|.++.|. +..|++++.|.++.+|...+..-..... .+.....|
T Consensus 260 eall~GHeDWV~sv~W~p~~~~LLSASaDksmiiW~pd~~tGiWv~~-------------------------vRlGe~gg 314 (764)
T KOG1063|consen 260 EALLMGHEDWVYSVWWHPEGLDLLSASADKSMIIWKPDENTGIWVDV-------------------------VRLGEVGG 314 (764)
T ss_pred hhhhcCcccceEEEEEccchhhheecccCcceEEEecCCccceEEEE-------------------------EEeecccc
Confidence 1235899999999998 5579999999999999877653222111 11111123
Q ss_pred cCCCEeEEEEcCCCCEEEEEeCCCcEEEEEccCC---eEEEEeecCCCceEEEEeCCCC-eEEEEcCCCeEEEEEcCCCC
Q 047325 153 HSDAVSCMSLDQDCGLLYTASWDRTFKVWRISDS---KCLESVSAHDDAVNSVVSSSEG-LIFTGSADGTVKVWKREQHG 228 (368)
Q Consensus 153 ~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~---~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~ 228 (368)
.........|+|+++.+++-+..|..++|..... .+...+.+|...|++++|.|.| +|++.+.|.+-|+|-.-..+
T Consensus 315 ~a~GF~g~lw~~n~~~ii~~g~~Gg~hlWkt~d~~~w~~~~~iSGH~~~V~dv~W~psGeflLsvs~DQTTRlFa~wg~q 394 (764)
T KOG1063|consen 315 SAGGFWGGLWSPNSNVIIAHGRTGGFHLWKTKDKTFWTQEPVISGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFARWGRQ 394 (764)
T ss_pred cccceeeEEEcCCCCEEEEecccCcEEEEeccCccceeeccccccccccceeeeecCCCCEEEEeccccceeeecccccc
Confidence 5566788999999999999999999999983221 3445567899999999999999 88899999888887322000
Q ss_pred CC------------------------------------------------------------------------------
Q 047325 229 KG------------------------------------------------------------------------------ 230 (368)
Q Consensus 229 ~~------------------------------------------------------------------------------ 230 (368)
..
T Consensus 395 ~~wHEiaRPQiHGyDl~c~~~vn~~~~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~ 474 (764)
T KOG1063|consen 395 QEWHEIARPQIHGYDLTCLSFVNEDLQFVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAF 474 (764)
T ss_pred cceeeecccccccccceeeehccCCceeeecccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCC
Confidence 00
Q ss_pred --------------------------------------cccccceeeccccccEEEEEEcCCCCEEEEecCCC-----cE
Q 047325 231 --------------------------------------TKHSLAQTLLKQECAVTALVVSSSRSIVYCGSSDG-----LV 267 (368)
Q Consensus 231 --------------------------------------~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg-----~i 267 (368)
...+...++.+|...|.+++.+|+++++|+++... .|
T Consensus 475 ~~~e~~~G~~~~~~~et~~~~~p~~L~ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI 554 (764)
T KOG1063|consen 475 FPGETNTGGEAAVCAETPLAAAPCELTEPPTEDQLQQNTLWPEVHKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVI 554 (764)
T ss_pred cccccccccccceeeecccccCchhccCCChHHHHHHhccchhhHHhccCceeEEEEEecCCCCEEeehhhhCCccceEE
Confidence 00011234556778999999999999999998654 58
Q ss_pred EEEeCCCccccceeeeccceEE--EEEEeCCCEEEEeeCCCeEEEEecCCCc--eeeeEeeeccccCeeEEEEecCCeee
Q 047325 268 NFWEREKQLSHGGVLKGHKLAV--LCLAAAGKLVFSGSADKTICVWRRDGAI--HTCLSVLTGHTGPVKCLAVEEDRDSS 343 (368)
Q Consensus 268 ~i~d~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~~~dg~i~iw~~~~~~--~~~~~~~~~h~~~v~~l~~~~~~~~~ 343 (368)
++|+..+.... ..+.+|...| +.|+||+++|++.+.|.++.+|...... .......+.|..-|++..|+|++.
T Consensus 555 ~lw~t~~W~~~-~~L~~HsLTVT~l~FSpdg~~LLsvsRDRt~sl~~~~~~~~~e~~fa~~k~HtRIIWdcsW~pde~-- 631 (764)
T KOG1063|consen 555 RLWNTANWLQV-QELEGHSLTVTRLAFSPDGRYLLSVSRDRTVSLYEVQEDIKDEFRFACLKAHTRIIWDCSWSPDEK-- 631 (764)
T ss_pred EEEeccchhhh-heecccceEEEEEEECCCCcEEEEeecCceEEeeeeecccchhhhhccccccceEEEEcccCcccc--
Confidence 99998876555 4788898888 5677899999999999999999874321 111233678999999999999999
Q ss_pred ecCCcceEEEEEeeCCcccccccC
Q 047325 344 SSTSSCAQRWIVYSGSLDKSDDDV 367 (368)
Q Consensus 344 ~~~~~~~~~w~l~sg~~D~~v~i~ 367 (368)
.++|+|.|++|++|
T Consensus 632 ----------~FaTaSRDK~VkVW 645 (764)
T KOG1063|consen 632 ----------YFATASRDKKVKVW 645 (764)
T ss_pred ----------eeEEecCCceEEEE
Confidence 68889999998888
No 124
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.95 E-value=2.9e-27 Score=179.71 Aligned_cols=247 Identities=19% Similarity=0.310 Sum_probs=197.8
Q ss_pred CCCceeeeccCcCCcEEEEEecCC--EEEEccCCCcEEEEcCCccee----cccCCCCCeeEEEEe--CCEEEEEeCCCe
Q 047325 32 PQNGLIGSLVREEGHIYSLAASKD--LLYTGSDSKNIRVWKNLKEFC----GFKASSGLVKAIVIS--GEKIFTGHQDGK 103 (368)
Q Consensus 32 ~~~~~~~~~~~h~~~i~~~~~~~~--~l~s~~~dg~i~iw~~~~~~~----~~~~~~~~v~~~~~~--~~~l~s~~~dg~ 103 (368)
...+++++|..|.++|+++.|+|. +|++|+.|++|+++|..+... .......+|.++.|. |++|+.|....+
T Consensus 160 a~hPvIRTlYDH~devn~l~FHPre~ILiS~srD~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHPsGefllvgTdHp~ 239 (430)
T KOG0640|consen 160 ARHPVIRTLYDHVDEVNDLDFHPRETILISGSRDNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHPSGEFLLVGTDHPT 239 (430)
T ss_pred cCCceEeehhhccCcccceeecchhheEEeccCCCeEEEEecccHHHHHHHHHhhccceeeeEeecCCCceEEEecCCCc
Confidence 346889999999999999999987 999999999999999875321 223456789999998 999999999999
Q ss_pred EEEEeecCCCccccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcCCCCEEEEEeCCCcEEEEEc
Q 047325 104 IRVWKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCGLLYTASWDRTFKVWRI 183 (368)
Q Consensus 104 i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~ 183 (368)
+++||+++-++....... .+|++.|+++.+++.+++.++++.||.|++||-
T Consensus 240 ~rlYdv~T~QcfvsanPd-----------------------------~qht~ai~~V~Ys~t~~lYvTaSkDG~IklwDG 290 (430)
T KOG0640|consen 240 LRLYDVNTYQCFVSANPD-----------------------------DQHTGAITQVRYSSTGSLYVTASKDGAIKLWDG 290 (430)
T ss_pred eeEEeccceeEeeecCcc-----------------------------cccccceeEEEecCCccEEEEeccCCcEEeecc
Confidence 999999988754433211 129999999999999999999999999999999
Q ss_pred cCCeEEEEee-cCC-CceEEEEeCCCC-eEEEEcCCCeEEEEEcCCCCCCcccccceeeccc-----cccEEEEEEcCCC
Q 047325 184 SDSKCLESVS-AHD-DAVNSVVSSSEG-LIFTGSADGTVKVWKREQHGKGTKHSLAQTLLKQ-----ECAVTALVVSSSR 255 (368)
Q Consensus 184 ~~~~~~~~~~-~~~-~~v~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~-----~~~i~~~~~~~~~ 255 (368)
-+++++.++. +|. ..|.+..|..++ ++++.+.|..+++|.+.++. ++....+. +.--+...|+...
T Consensus 291 VS~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG~DS~vkLWEi~t~R------~l~~YtGAg~tgrq~~rtqAvFNhtE 364 (430)
T KOG0640|consen 291 VSNRCVRTIGNAHGGSEVCSAVFTKNGKYILSSGKDSTVKLWEISTGR------MLKEYTGAGTTGRQKHRTQAVFNHTE 364 (430)
T ss_pred ccHHHHHHHHhhcCCceeeeEEEccCCeEEeecCCcceeeeeeecCCc------eEEEEecCCcccchhhhhhhhhcCcc
Confidence 9999998886 354 468899999999 99999999999999998763 33333322 1122334566666
Q ss_pred CEEEEec-CCCcEEEEeCCCccccceeeeccceEEEEE--EeCCCEEEEeeCCCeEEEEec
Q 047325 256 SIVYCGS-SDGLVNFWEREKQLSHGGVLKGHKLAVLCL--AAAGKLVFSGSADKTICVWRR 313 (368)
Q Consensus 256 ~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~--~~~~~~l~~~~~dg~i~iw~~ 313 (368)
.+++.-. ..+.+.-||.++.........+|.+.+..+ +|.+.-+++|+.|-.+++|--
T Consensus 365 dyVl~pDEas~slcsWdaRtadr~~l~slgHn~a~R~i~HSP~~p~FmTcsdD~raRFWyr 425 (430)
T KOG0640|consen 365 DYVLFPDEASNSLCSWDARTADRVALLSLGHNGAVRWIVHSPVEPAFMTCSDDFRARFWYR 425 (430)
T ss_pred ceEEccccccCceeeccccchhhhhhcccCCCCCceEEEeCCCCCceeeecccceeeeeee
Confidence 6666544 346799999998877777778899888666 478899999999999999953
No 125
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.95 E-value=6.2e-25 Score=159.96 Aligned_cols=244 Identities=20% Similarity=0.278 Sum_probs=192.1
Q ss_pred CCCceeeeccCcCCcEEEEEec--CCEEEEccCCCcEEEEcCCc-------ceecccCCCCCeeEEEEe------CCEEE
Q 047325 32 PQNGLIGSLVREEGHIYSLAAS--KDLLYTGSDSKNIRVWKNLK-------EFCGFKASSGLVKAIVIS------GEKIF 96 (368)
Q Consensus 32 ~~~~~~~~~~~h~~~i~~~~~~--~~~l~s~~~dg~i~iw~~~~-------~~~~~~~~~~~v~~~~~~------~~~l~ 96 (368)
|+.-+.+.-+.|.+.|+|.+|+ |+++++|+.|++|++..... ....+.-|.+.|..++|- +..|+
T Consensus 77 pp~v~~kr~khhkgsiyc~~ws~~geliatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~ 156 (350)
T KOG0641|consen 77 PPSVLCKRNKHHKGSIYCTAWSPCGELIATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILA 156 (350)
T ss_pred CCeEEeeeccccCccEEEEEecCccCeEEecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEE
Confidence 4444556778899999999998 45999999999999975543 244677899999999995 34566
Q ss_pred EEe-CCCeEEEEeecCCCccccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcCCCCEEEEEeCC
Q 047325 97 TGH-QDGKIRVWKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCGLLYTASWD 175 (368)
Q Consensus 97 s~~-~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d 175 (368)
+++ .|..|.+-|...++. ...+.||++-|.++. +=++-.+++|+.|
T Consensus 157 s~gagdc~iy~tdc~~g~~--------------------------------~~a~sghtghilaly-swn~~m~~sgsqd 203 (350)
T KOG0641|consen 157 SAGAGDCKIYITDCGRGQG--------------------------------FHALSGHTGHILALY-SWNGAMFASGSQD 203 (350)
T ss_pred ecCCCcceEEEeecCCCCc--------------------------------ceeecCCcccEEEEE-EecCcEEEccCCC
Confidence 554 355566666665542 223445999888874 2357799999999
Q ss_pred CcEEEEEccCCeEEEEeec--C-----CCceEEEEeCCCC-eEEEEcCCCeEEEEEcCCCCCCcccccceeeccccccEE
Q 047325 176 RTFKVWRISDSKCLESVSA--H-----DDAVNSVVSSSEG-LIFTGSADGTVKVWKREQHGKGTKHSLAQTLLKQECAVT 247 (368)
Q Consensus 176 ~~i~iwd~~~~~~~~~~~~--~-----~~~v~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~i~ 247 (368)
.+|++||++-..++.++.. | ...|.+++..|.| +|++|-.|....+||++.+ .+++.+..|...|.
T Consensus 204 ktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdpsgrll~sg~~dssc~lydirg~------r~iq~f~phsadir 277 (350)
T KOG0641|consen 204 KTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSGRLLASGHADSSCMLYDIRGG------RMIQRFHPHSADIR 277 (350)
T ss_pred ceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCCcceeeeccCCCceEEEEeeCC------ceeeeeCCCcccee
Confidence 9999999998888877642 2 3578999999999 8999999999999999976 46888999999999
Q ss_pred EEEEcCCCCEEEEecCCCcEEEEeCCC---ccccceeeeccceEEEE--EEeCCCEEEEeeCCCeEEEEecC
Q 047325 248 ALVVSSSRSIVYCGSSDGLVNFWEREK---QLSHGGVLKGHKLAVLC--LAAAGKLVFSGSADKTICVWRRD 314 (368)
Q Consensus 248 ~~~~~~~~~~l~~~~~dg~i~i~d~~~---~~~~~~~~~~~~~~~~~--~~~~~~~l~~~~~dg~i~iw~~~ 314 (368)
++.|+|...++++++.|..|++-|++. .+.+......|...+.. +.|..--+++.+.|.++.+|-+.
T Consensus 278 ~vrfsp~a~yllt~syd~~ikltdlqgdla~el~~~vv~ehkdk~i~~rwh~~d~sfisssadkt~tlwa~~ 349 (350)
T KOG0641|consen 278 CVRFSPGAHYLLTCSYDMKIKLTDLQGDLAHELPIMVVAEHKDKAIQCRWHPQDFSFISSSADKTATLWALN 349 (350)
T ss_pred EEEeCCCceEEEEecccceEEEeecccchhhcCceEEEEeccCceEEEEecCccceeeeccCcceEEEeccC
Confidence 999999999999999999999999884 34444556677776644 44566678889999999999653
No 126
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.95 E-value=7.7e-26 Score=180.58 Aligned_cols=274 Identities=15% Similarity=0.221 Sum_probs=205.2
Q ss_pred CCcEEEEEecCC--EEEEccCCCcEEEEcCCc----ceecccCCCCCeeEEEEe--CC-EEEEEeCCCeEEEEeecCCCc
Q 047325 44 EGHIYSLAASKD--LLYTGSDSKNIRVWKNLK----EFCGFKASSGLVKAIVIS--GE-KIFTGHQDGKIRVWKISPKNQ 114 (368)
Q Consensus 44 ~~~i~~~~~~~~--~l~s~~~dg~i~iw~~~~----~~~~~~~~~~~v~~~~~~--~~-~l~s~~~dg~i~vw~~~~~~~ 114 (368)
.+.|+++.|++. +|++|+.||+++||.+.. .++.+.....+|.+..|. |. .+++++.-..+..||+.+.+.
T Consensus 213 ~~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ak~ 292 (514)
T KOG2055|consen 213 HGGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNPKLQSIHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETAKV 292 (514)
T ss_pred cCCceEEEecCCCceEEEecCCCcEEEEEecCccChhheeeeeccCccceeeecCCCceEEEecccceEEEEeecccccc
Confidence 467999999977 999999999999998763 345555667788888887 66 899999999999999988765
Q ss_pred cccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcCCCCEEEEEeCCCcEEEEEccCCeEEEEeec
Q 047325 115 SVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCGLLYTASWDRTFKVWRISDSKCLESVSA 194 (368)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~ 194 (368)
......... ....+....+++++++|+..+..|.|.+....+++.+..++
T Consensus 293 ~k~~~~~g~-----------------------------e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~s~K- 342 (514)
T KOG2055|consen 293 TKLKPPYGV-----------------------------EEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELITSFK- 342 (514)
T ss_pred ccccCCCCc-----------------------------ccchhheeEecCCCCeEEEcccCceEEeehhhhhhhhheee-
Confidence 433332211 12456678889999999999999999999999999999887
Q ss_pred CCCceEEEEeCCCC-eEEEEcCCCeEEEEEcCCCCCCcccccceeeccc-cccEEEEEEcCCCCEEEEecCCCcEEEEeC
Q 047325 195 HDDAVNSVVSSSEG-LIFTGSADGTVKVWKREQHGKGTKHSLAQTLLKQ-ECAVTALVVSSSRSIVYCGSSDGLVNFWER 272 (368)
Q Consensus 195 ~~~~v~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~-~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~ 272 (368)
-++.|..++|+.++ .|++.+.+|.|.+||++.. .+...+... .-.-++++.++++.+||+|+..|.|.|||.
T Consensus 343 ieG~v~~~~fsSdsk~l~~~~~~GeV~v~nl~~~------~~~~rf~D~G~v~gts~~~S~ng~ylA~GS~~GiVNIYd~ 416 (514)
T KOG2055|consen 343 IEGVVSDFTFSSDSKELLASGGTGEVYVWNLRQN------SCLHRFVDDGSVHGTSLCISLNGSYLATGSDSGIVNIYDG 416 (514)
T ss_pred eccEEeeEEEecCCcEEEEEcCCceEEEEecCCc------ceEEEEeecCccceeeeeecCCCceEEeccCcceEEEecc
Confidence 46789999999999 8888889999999999876 234443322 223467888899999999999999999996
Q ss_pred CCc-----cccceeeeccceEE--EEEEeCCCEEEEeeC--CCeEEEEecCCCceeeeEeeec---cccCeeEEEEecCC
Q 047325 273 EKQ-----LSHGGVLKGHKLAV--LCLAAAGKLVFSGSA--DKTICVWRRDGAIHTCLSVLTG---HTGPVKCLAVEEDR 340 (368)
Q Consensus 273 ~~~-----~~~~~~~~~~~~~~--~~~~~~~~~l~~~~~--dg~i~iw~~~~~~~~~~~~~~~---h~~~v~~l~~~~~~ 340 (368)
.+. ..+...+..-...| +.|++|.++|+.+|. +..+++-.+.+. ....-+.. .-+.|+||+|+|.+
T Consensus 417 ~s~~~s~~PkPik~~dNLtt~Itsl~Fn~d~qiLAiaS~~~knalrLVHvPS~--TVFsNfP~~n~~vg~vtc~aFSP~s 494 (514)
T KOG2055|consen 417 NSCFASTNPKPIKTVDNLTTAITSLQFNHDAQILAIASRVKKNALRLVHVPSC--TVFSNFPTSNTKVGHVTCMAFSPNS 494 (514)
T ss_pred chhhccCCCCchhhhhhhheeeeeeeeCcchhhhhhhhhccccceEEEeccce--eeeccCCCCCCcccceEEEEecCCC
Confidence 632 12222222222333 566678999988875 677888877654 33333332 23459999999999
Q ss_pred eeeecCCcceEEEEEeeCCcccccccC
Q 047325 341 DSSSSTSSCAQRWIVYSGSLDKSDDDV 367 (368)
Q Consensus 341 ~~~~~~~~~~~~w~l~sg~~D~~v~i~ 367 (368)
- +++.|..+|.|.+|
T Consensus 495 G------------~lAvGNe~grv~l~ 509 (514)
T KOG2055|consen 495 G------------YLAVGNEAGRVHLF 509 (514)
T ss_pred c------------eEEeecCCCceeeE
Confidence 8 56677777777766
No 127
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.95 E-value=4.4e-28 Score=203.38 Aligned_cols=247 Identities=25% Similarity=0.389 Sum_probs=206.6
Q ss_pred EEEccCCCcEEEEcCCcceecccCCCCCeeEEEEe--CCEEEEEeCCCeEEEEeecCCCccccccCCccccceeeeeccC
Q 047325 57 LYTGSDSKNIRVWKNLKEFCGFKASSGLVKAIVIS--GEKIFTGHQDGKIRVWKISPKNQSVHKRAGTLPTLKDIFKSSI 134 (368)
Q Consensus 57 l~s~~~dg~i~iw~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~ 134 (368)
++.+..+-.+++||..+ +..|...+.++... ++.+++|+.|..+.+|.+.......
T Consensus 7 ~m~~~~~t~Lr~~~~~~----~~~hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp~~i~------------------ 64 (825)
T KOG0267|consen 7 LMKTKRATKLRVWDTRE----FVAHSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKPNAIT------------------ 64 (825)
T ss_pred cceeeeeeccccccchh----hhhhhhhhceeeeeccceeeccCCCceeeccccccCCchhh------------------
Confidence 34444555677777654 34577777777754 7899999999999999887654322
Q ss_pred CCCceeEecccceeeeeecCCCEeEEEEcCCCCEEEEEeCCCcEEEEEccCCeEEEEeecCCCceEEEEeCCCC-eEEEE
Q 047325 135 KPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCGLLYTASWDRTFKVWRISDSKCLESVSAHDDAVNSVVSSSEG-LIFTG 213 (368)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~ 213 (368)
.+.+|..+|.++.|++...+|++|+.+|+|++||++..+.++++.+|...+.++.|+|-+ +.+.|
T Consensus 65 --------------S~~~hespIeSl~f~~~E~LlaagsasgtiK~wDleeAk~vrtLtgh~~~~~sv~f~P~~~~~a~g 130 (825)
T KOG0267|consen 65 --------------SLTGHESPIESLTFDTSERLLAAGSASGTIKVWDLEEAKIVRTLTGHLLNITSVDFHPYGEFFASG 130 (825)
T ss_pred --------------eeeccCCcceeeecCcchhhhcccccCCceeeeehhhhhhhhhhhccccCcceeeeccceEEeccc
Confidence 245599999999999999999999999999999999999999999999999999999999 88899
Q ss_pred cCCCeEEEEEcCCCCCCcccccceeeccccccEEEEEEcCCCCEEEEecCCCcEEEEeCCCccccceeeeccceEEEE--
Q 047325 214 SADGTVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSSSRSIVYCGSSDGLVNFWEREKQLSHGGVLKGHKLAVLC-- 291 (368)
Q Consensus 214 ~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~-- 291 (368)
+.|..+++||++..+ +...+.+|...+..+.|+|+|++++.|++|..+++||+..++.. ..+..|...+..
T Consensus 131 Stdtd~~iwD~Rk~G------c~~~~~s~~~vv~~l~lsP~Gr~v~~g~ed~tvki~d~~agk~~-~ef~~~e~~v~sle 203 (825)
T KOG0267|consen 131 STDTDLKIWDIRKKG------CSHTYKSHTRVVDVLRLSPDGRWVASGGEDNTVKIWDLTAGKLS-KEFKSHEGKVQSLE 203 (825)
T ss_pred cccccceehhhhccC------ceeeecCCcceeEEEeecCCCceeeccCCcceeeeecccccccc-cccccccccccccc
Confidence 999999999998543 57777889999999999999999999999999999999887665 567778777754
Q ss_pred EEeCCCEEEEeeCCCeEEEEecCCCceeeeEeeeccccCeeEEEEecCCeeeecCCc
Q 047325 292 LAAAGKLVFSGSADKTICVWRRDGAIHTCLSVLTGHTGPVKCLAVEEDRDSSSSTSS 348 (368)
Q Consensus 292 ~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~ 348 (368)
++|..-++++|+.|+++++||+++- +.+.........|.+++|+|++..+.++..
T Consensus 204 ~hp~e~Lla~Gs~d~tv~f~dletf--e~I~s~~~~~~~v~~~~fn~~~~~~~~G~q 258 (825)
T KOG0267|consen 204 FHPLEVLLAPGSSDRTVRFWDLETF--EVISSGKPETDGVRSLAFNPDGKIVLSGEQ 258 (825)
T ss_pred cCchhhhhccCCCCceeeeecccee--EEeeccCCccCCceeeeecCCceeeecCch
Confidence 4556778999999999999998865 667777777889999999999997666553
No 128
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.95 E-value=8.6e-25 Score=176.61 Aligned_cols=313 Identities=16% Similarity=0.270 Sum_probs=220.7
Q ss_pred eeccCcCCcEEEEEecCC--EEEEccCCC--------cEEEEcCCc--ceecccCCCCCeeEEEEe----CCEEEEE--e
Q 047325 38 GSLVREEGHIYSLAASKD--LLYTGSDSK--------NIRVWKNLK--EFCGFKASSGLVKAIVIS----GEKIFTG--H 99 (368)
Q Consensus 38 ~~~~~h~~~i~~~~~~~~--~l~s~~~dg--------~i~iw~~~~--~~~~~~~~~~~v~~~~~~----~~~l~s~--~ 99 (368)
+.+.+|...|.|++.+|+ .+++|-.-| .+|+||..+ .+..+......|.+++|+ |.+|+.. +
T Consensus 98 r~y~GH~ddikc~~vHPdri~vatGQ~ag~~g~~~~phvriWdsv~L~TL~V~g~f~~GV~~vaFsk~~~G~~l~~vD~s 177 (626)
T KOG2106|consen 98 RHYLGHNDDIKCMAVHPDRIRVATGQGAGTSGRPLQPHVRIWDSVTLSTLHVIGFFDRGVTCVAFSKINGGSLLCAVDDS 177 (626)
T ss_pred ccccCCCCceEEEeecCCceeeccCcccccCCCcCCCeeeecccccceeeeeeccccccceeeeecccCCCceEEEecCC
Confidence 446789999999999998 556554444 499999653 455555677889999998 5555554 4
Q ss_pred CCCeEEEEeecCCCccccccCCccccceeeeeccCCCC--c----------ee-Eecc----cceeeeee-cCCCEeEEE
Q 047325 100 QDGKIRVWKISPKNQSVHKRAGTLPTLKDIFKSSIKPS--N----------YI-EVRR----HRTALWIR-HSDAVSCMS 161 (368)
Q Consensus 100 ~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~----------~~-~~~~----~~~~~~~~-~~~~v~~~~ 161 (368)
.+..+.+||...+........... ..+...++|. + ++ ..+. .+...+.+ ..+.|.|++
T Consensus 178 ~~h~lSVWdWqk~~~~~~vk~sne----~v~~a~FHPtd~nliit~Gk~H~~Fw~~~~~~l~k~~~~fek~ekk~Vl~v~ 253 (626)
T KOG2106|consen 178 NPHMLSVWDWQKKAKLGPVKTSNE----VVFLATFHPTDPNLIITCGKGHLYFWTLRGGSLVKRQGIFEKREKKFVLCVT 253 (626)
T ss_pred CccccchhhchhhhccCcceeccc----eEEEEEeccCCCcEEEEeCCceEEEEEccCCceEEEeeccccccceEEEEEE
Confidence 466799999987765433332111 1111111111 1 11 1111 11112222 236799999
Q ss_pred EcCCCCEEEEEeCCCcEEEEEccCCeEEEEeecCCCceEEEEeCCCCeEEEEcCCCeEEEEEcCCCCCCcc---------
Q 047325 162 LDQDCGLLYTASWDRTFKVWRISDSKCLESVSAHDDAVNSVVSSSEGLIFTGSADGTVKVWKREQHGKGTK--------- 232 (368)
Q Consensus 162 ~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~--------- 232 (368)
|.+++. +++|..+|.|.||+..+.+..+....|++.|.+++...+|.|++|+.|+.|..||-.-......
T Consensus 254 F~engd-viTgDS~G~i~Iw~~~~~~~~k~~~aH~ggv~~L~~lr~GtllSGgKDRki~~Wd~~y~k~r~~elPe~~G~i 332 (626)
T KOG2106|consen 254 FLENGD-VITGDSGGNILIWSKGTNRISKQVHAHDGGVFSLCMLRDGTLLSGGKDRKIILWDDNYRKLRETELPEQFGPI 332 (626)
T ss_pred EcCCCC-EEeecCCceEEEEeCCCceEEeEeeecCCceEEEEEecCccEeecCccceEEeccccccccccccCchhcCCe
Confidence 999886 7799999999999998888887777999999999999999999999999999999432211000
Q ss_pred -------------------------cccceeeccccccEEEEEEcCCCCEEEEecCCCcEEEEeCCCccccceeeeccce
Q 047325 233 -------------------------HSLAQTLLKQECAVTALVVSSSRSIVYCGSSDGLVNFWEREKQLSHGGVLKGHKL 287 (368)
Q Consensus 233 -------------------------~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~ 287 (368)
........+|......++.+|+.+.+++++.|+.+++|+ ..+.........+.
T Consensus 333 Rtv~e~~~di~vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla~hps~~q~~T~gqdk~v~lW~--~~k~~wt~~~~d~~ 410 (626)
T KOG2106|consen 333 RTVAEGKGDILVGTTRNFILQGTLENGFTLTVQGHGDELWGLATHPSKNQLLTCGQDKHVRLWN--DHKLEWTKIIEDPA 410 (626)
T ss_pred eEEecCCCcEEEeeccceEEEeeecCCceEEEEecccceeeEEcCCChhheeeccCcceEEEcc--CCceeEEEEecCce
Confidence 000122345666788899999999999999999999999 34444455556677
Q ss_pred EEEEEEeCCCEEEEeeCCCeEEEEecCCCceeeeEeeeccccCeeEEEEecCCeeeecCCcceEEEEEeeCCccc
Q 047325 288 AVLCLAAAGKLVFSGSADKTICVWRRDGAIHTCLSVLTGHTGPVKCLAVEEDRDSSSSTSSCAQRWIVYSGSLDK 362 (368)
Q Consensus 288 ~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~w~l~sg~~D~ 362 (368)
....|+|.| .++.|...|...+.|.++. ..+..-. ...+++.++|+|+|.++|.++.++.++ ++.-+.+|
T Consensus 411 ~~~~fhpsg-~va~Gt~~G~w~V~d~e~~--~lv~~~~-d~~~ls~v~ysp~G~~lAvgs~d~~iy-iy~Vs~~g 480 (626)
T KOG2106|consen 411 ECADFHPSG-VVAVGTATGRWFVLDTETQ--DLVTIHT-DNEQLSVVRYSPDGAFLAVGSHDNHIY-IYRVSANG 480 (626)
T ss_pred eEeeccCcc-eEEEeeccceEEEEecccc--eeEEEEe-cCCceEEEEEcCCCCEEEEecCCCeEE-EEEECCCC
Confidence 778889999 9999999999999998875 3343333 388999999999999888887776664 33444444
No 129
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.95 E-value=8.3e-26 Score=198.22 Aligned_cols=245 Identities=18% Similarity=0.242 Sum_probs=197.0
Q ss_pred CCceeeeccCcCCcEEEEEecCC--EEEEccCCCcEEEEcCCc--------------------ceecccCCCCCeeEEEE
Q 047325 33 QNGLIGSLVREEGHIYSLAASKD--LLYTGSDSKNIRVWKNLK--------------------EFCGFKASSGLVKAIVI 90 (368)
Q Consensus 33 ~~~~~~~~~~h~~~i~~~~~~~~--~l~s~~~dg~i~iw~~~~--------------------~~~~~~~~~~~v~~~~~ 90 (368)
-.+.+.++..|.+.|+|+.|+++ +||+||+|+.|.||+... ....+.+|...|..++|
T Consensus 58 l~k~l~~m~~h~~sv~CVR~S~dG~~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~W 137 (942)
T KOG0973|consen 58 LPKHLCTMDDHDGSVNCVRFSPDGSYLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNW 137 (942)
T ss_pred cchhheeeccccCceeEEEECCCCCeEeeccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceecc
Confidence 46678889999999999999765 999999999999998541 24467899999999999
Q ss_pred e--CCEEEEEeCCCeEEEEeecCCCccccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcCCCCE
Q 047325 91 S--GEKIFTGHQDGKIRVWKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCGL 168 (368)
Q Consensus 91 ~--~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 168 (368)
+ +.+|++++.|++|.+|+..+.+. ..++.+|...|..+.|.|-|++
T Consensus 138 sp~~~~lvS~s~DnsViiwn~~tF~~--------------------------------~~vl~~H~s~VKGvs~DP~Gky 185 (942)
T KOG0973|consen 138 SPDDSLLVSVSLDNSVIIWNAKTFEL--------------------------------LKVLRGHQSLVKGVSWDPIGKY 185 (942)
T ss_pred CCCccEEEEecccceEEEEcccccee--------------------------------eeeeecccccccceEECCccCe
Confidence 9 88999999999999999887642 3345569999999999999999
Q ss_pred EEEEeCCCcEEEEEccCCeEEEEeecCC------CceEEEEeCCCC-eEEEEcC----CCeEEEEEcCCCCCCcccccce
Q 047325 169 LYTASWDRTFKVWRISDSKCLESVSAHD------DAVNSVVSSSEG-LIFTGSA----DGTVKVWKREQHGKGTKHSLAQ 237 (368)
Q Consensus 169 l~~~~~d~~i~iwd~~~~~~~~~~~~~~------~~v~~~~~~~~~-~l~~~~~----dg~i~i~d~~~~~~~~~~~~~~ 237 (368)
|++-+.|++|++|++.+....+.+.++. .....+.|+||| +|++... -..+.|.+..+- ....
T Consensus 186 ~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWSPDG~~las~nA~n~~~~~~~IieR~tW------k~~~ 259 (942)
T KOG0973|consen 186 FASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWSPDGHHLASPNAVNGGKSTIAIIERGTW------KVDK 259 (942)
T ss_pred eeeecCCceEEEEEcccceeeEeeccchhhCCCcceeeecccCCCcCeecchhhccCCcceeEEEecCCc------eeee
Confidence 9999999999999988777776665542 357789999999 7776543 345777765432 4567
Q ss_pred eeccccccEEEEEEcC-----CCC------------EEEEecCCCcEEEEeCCCccccceee--eccceEEEEEEeCCCE
Q 047325 238 TLLKQECAVTALVVSS-----SRS------------IVYCGSSDGLVNFWEREKQLSHGGVL--KGHKLAVLCLAAAGKL 298 (368)
Q Consensus 238 ~~~~~~~~i~~~~~~~-----~~~------------~l~~~~~dg~i~i~d~~~~~~~~~~~--~~~~~~~~~~~~~~~~ 298 (368)
.+.+|..++.++.|+| +.+ .+|+|+.|++|.||.....+.+.... ..+...-++++|||-.
T Consensus 260 ~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~~RPl~vi~~lf~~SI~DmsWspdG~~ 339 (942)
T KOG0973|consen 260 DLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTALPRPLFVIHNLFNKSIVDMSWSPDGFS 339 (942)
T ss_pred eeecCCCceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEEEecCCCCchhhhhhhhcCceeeeeEcCCCCe
Confidence 7889999999999998 112 68899999999999987655543332 3334344666678999
Q ss_pred EEEeeCCCeEEEEecCC
Q 047325 299 VFSGSADKTICVWRRDG 315 (368)
Q Consensus 299 l~~~~~dg~i~iw~~~~ 315 (368)
|+++|.||+|.+..++.
T Consensus 340 LfacS~DGtV~~i~Fee 356 (942)
T KOG0973|consen 340 LFACSLDGTVALIHFEE 356 (942)
T ss_pred EEEEecCCeEEEEEcch
Confidence 99999999999998764
No 130
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.95 E-value=5.8e-25 Score=167.03 Aligned_cols=231 Identities=16% Similarity=0.207 Sum_probs=175.6
Q ss_pred CCCCeeEEEEe--CCEEEEEeCCCeEEEEeecCCCccccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEe
Q 047325 81 SSGLVKAIVIS--GEKIFTGHQDGKIRVWKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVS 158 (368)
Q Consensus 81 ~~~~v~~~~~~--~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 158 (368)
....|.++.|+ ++.|++++.||++++||+...+...... |..++.
T Consensus 12 P~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~l~~~~~---------------------------------~~~plL 58 (323)
T KOG1036|consen 12 PEDGISSVKFSPSSSDLLVSSWDGSLRLYDVPANSLKLKFK---------------------------------HGAPLL 58 (323)
T ss_pred ChhceeeEEEcCcCCcEEEEeccCcEEEEeccchhhhhhee---------------------------------cCCcee
Confidence 45679999998 6788888899999999998775433332 889999
Q ss_pred EEEEcCCCCEEEEEeCCCcEEEEEccCCeEEEEeecCCCceEEEEeCCCC-eEEEEcCCCeEEEEEcCCCCCCcccccce
Q 047325 159 CMSLDQDCGLLYTASWDRTFKVWRISDSKCLESVSAHDDAVNSVVSSSEG-LIFTGSADGTVKVWKREQHGKGTKHSLAQ 237 (368)
Q Consensus 159 ~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~ 237 (368)
+++|.+ ...+++|+.||.|+.+|+.++... .+..|..+|.|+...+.. .+++|+.|++|++||.+... ...
T Consensus 59 ~c~F~d-~~~~~~G~~dg~vr~~Dln~~~~~-~igth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~------~~~ 130 (323)
T KOG1036|consen 59 DCAFAD-ESTIVTGGLDGQVRRYDLNTGNED-QIGTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKV------VVG 130 (323)
T ss_pred eeeccC-CceEEEeccCceEEEEEecCCcce-eeccCCCceEEEEeeccCCeEEEcccCccEEEEeccccc------ccc
Confidence 999987 467999999999999999887654 455699999999998765 99999999999999998531 122
Q ss_pred eeccccccEEEEEEcCCCCEEEEecCCCcEEEEeCCCccccceee-ec--cceEEEEEEeCCCEEEEeeCCCeEEEEecC
Q 047325 238 TLLKQECAVTALVVSSSRSIVYCGSSDGLVNFWEREKQLSHGGVL-KG--HKLAVLCLAAAGKLVFSGSADKTICVWRRD 314 (368)
Q Consensus 238 ~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~-~~--~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~ 314 (368)
. ......|.++.. .++.|+.|+.|..+.+||+++........ .. -....+++-|++.-.++++-||+|.+=.++
T Consensus 131 ~-~d~~kkVy~~~v--~g~~LvVg~~~r~v~iyDLRn~~~~~q~reS~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d 207 (323)
T KOG1036|consen 131 T-FDQGKKVYCMDV--SGNRLVVGTSDRKVLIYDLRNLDEPFQRRESSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFD 207 (323)
T ss_pred c-cccCceEEEEec--cCCEEEEeecCceEEEEEcccccchhhhccccceeEEEEEEEecCCCceEEEeecceEEEEccC
Confidence 2 223347887766 47889999999999999999765543111 11 223335555788889999999999886665
Q ss_pred CC--ceeeeEeeecccc---------CeeEEEEecCCeeeecCCcceEEEEEeeCCcccccccC
Q 047325 315 GA--IHTCLSVLTGHTG---------PVKCLAVEEDRDSSSSTSSCAQRWIVYSGSLDKSDDDV 367 (368)
Q Consensus 315 ~~--~~~~~~~~~~h~~---------~v~~l~~~~~~~~~~~~~~~~~~w~l~sg~~D~~v~i~ 367 (368)
.. .......|+.|.. ||++|+|+|-.. .++||+.||.|-+|
T Consensus 208 ~s~~~~skkyaFkCHr~~~~~~~~~yPVNai~Fhp~~~------------tfaTgGsDG~V~~W 259 (323)
T KOG1036|consen 208 DSEEAQSKKYAFKCHRLSEKDTEIIYPVNAIAFHPIHG------------TFATGGSDGIVNIW 259 (323)
T ss_pred CchHHhhhceeEEeeecccCCceEEEEeceeEeccccc------------eEEecCCCceEEEc
Confidence 43 2233455666643 799999999988 67788888888777
No 131
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=3.5e-26 Score=181.64 Aligned_cols=233 Identities=20% Similarity=0.307 Sum_probs=174.7
Q ss_pred CCEEEEEeCCCeEEEEeecCCCcccccc-CCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcCC-CCEE
Q 047325 92 GEKIFTGHQDGKIRVWKISPKNQSVHKR-AGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQD-CGLL 169 (368)
Q Consensus 92 ~~~l~s~~~dg~i~vw~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l 169 (368)
|+++|.|+.|..|.|||+.-........ .+..... .......+...-.+|++.|..+.|+.. .+.|
T Consensus 192 gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk------------~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVL 259 (463)
T KOG0270|consen 192 GNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASK------------KKKKKGKRSNSASGHTDAVLALSWNRNFRNVL 259 (463)
T ss_pred cceEEEeccCceeEEeccccccccccceeechhhhh------------hhhhhcccccccccchHHHHHHHhccccceeE
Confidence 7899999999999999997544322111 1100000 000001112223469999999999874 5689
Q ss_pred EEEeCCCcEEEEEccCCeEEEEeecCCCceEEEEeCCCC--eEEEEcCCCeEEEEEcCCCCCCcccccceeeccccccEE
Q 047325 170 YTASWDRTFKVWRISDSKCLESVSAHDDAVNSVVSSSEG--LIFTGSADGTVKVWKREQHGKGTKHSLAQTLLKQECAVT 247 (368)
Q Consensus 170 ~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~--~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~i~ 247 (368)
++|+.|.+|++||+.++++...+..|...|.++.|+|.. .|++|+.|+++.+.|.|.... ....-...+.|.
T Consensus 260 aSgsaD~TV~lWD~~~g~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~------s~~~wk~~g~VE 333 (463)
T KOG0270|consen 260 ASGSADKTVKLWDVDTGKPKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSN------SGKEWKFDGEVE 333 (463)
T ss_pred EecCCCceEEEEEcCCCCcceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCccc------cCceEEeccceE
Confidence 999999999999999999999999999999999999987 999999999999999996422 222223456799
Q ss_pred EEEEcCC-CCEEEEecCCCcEEEEeCCCccccceeeeccceEEEEEEeC---CCEEEEeeCCCeEEEEecCCCceeeeEe
Q 047325 248 ALVVSSS-RSIVYCGSSDGLVNFWEREKQLSHGGVLKGHKLAVLCLAAA---GKLVFSGSADKTICVWRRDGAIHTCLSV 323 (368)
Q Consensus 248 ~~~~~~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~---~~~l~~~~~dg~i~iw~~~~~~~~~~~~ 323 (368)
.++|.|. ...++++..||+|+-+|+|....+......|...|.+++.+ ..++++++.|+.|++|++.......+..
T Consensus 334 kv~w~~~se~~f~~~tddG~v~~~D~R~~~~~vwt~~AHd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~~~~v~~ 413 (463)
T KOG0270|consen 334 KVAWDPHSENSFFVSTDDGTVYYFDIRNPGKPVWTLKAHDDEISGLSVNIQTPGLLSTASTDKVVKLWKFDVDSPKSVKE 413 (463)
T ss_pred EEEecCCCceeEEEecCCceEEeeecCCCCCceeEEEeccCCcceEEecCCCCcceeeccccceEEEEeecCCCCccccc
Confidence 9999984 45788889999999999999878888999999999888875 5689999999999999997654433332
Q ss_pred eeccccCeeEEEEecCCee
Q 047325 324 LTGHTGPVKCLAVEEDRDS 342 (368)
Q Consensus 324 ~~~h~~~v~~l~~~~~~~~ 342 (368)
-.-.-+...|.++.|+-..
T Consensus 414 ~~~~~~rl~c~~~~~~~a~ 432 (463)
T KOG0270|consen 414 HSFKLGRLHCFALDPDVAF 432 (463)
T ss_pred ccccccceeecccCCCcce
Confidence 2222234667788887664
No 132
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.95 E-value=1.4e-24 Score=185.29 Aligned_cols=311 Identities=17% Similarity=0.261 Sum_probs=226.9
Q ss_pred ccccCCCceeeeccCcCCcEEEEEec--CC-EEEEccCCCcEEEEcCCccee---cccCCCCCeeEEEEe--CCEEEEEe
Q 047325 28 EENLPQNGLIGSLVREEGHIYSLAAS--KD-LLYTGSDSKNIRVWKNLKEFC---GFKASSGLVKAIVIS--GEKIFTGH 99 (368)
Q Consensus 28 ~~~~~~~~~~~~~~~h~~~i~~~~~~--~~-~l~s~~~dg~i~iw~~~~~~~---~~~~~~~~v~~~~~~--~~~l~s~~ 99 (368)
.-++..++.+.+++.-.++|++++|. |+ .+|+|+..|.+-+||+++... ....|.+.|....|. ...+++++
T Consensus 228 ifNlK~dkil~sFk~d~g~VtslSFrtDG~p~las~~~~G~m~~wDLe~kkl~~v~~nah~~sv~~~~fl~~epVl~ta~ 307 (910)
T KOG1539|consen 228 IFNLKFDKILMSFKQDWGRVTSLSFRTDGNPLLASGRSNGDMAFWDLEKKKLINVTRNAHYGSVTGATFLPGEPVLVTAG 307 (910)
T ss_pred EEEcccCcEEEEEEccccceeEEEeccCCCeeEEeccCCceEEEEEcCCCeeeeeeeccccCCcccceecCCCceEeecc
Confidence 34567777788877667999999996 55 899999999999999985432 345788888888887 45889999
Q ss_pred CCCeEEEEeecCCCccc---cccCCc--cccceee--------eecc---------------------------------
Q 047325 100 QDGKIRVWKISPKNQSV---HKRAGT--LPTLKDI--------FKSS--------------------------------- 133 (368)
Q Consensus 100 ~dg~i~vw~~~~~~~~~---~~~~~~--~~~~~~~--------~~~~--------------------------------- 133 (368)
.|..+++|=.+++.-.. ..+.+. .+....+ ....
T Consensus 308 ~DnSlk~~vfD~~dg~pR~LR~R~GHs~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~ 387 (910)
T KOG1539|consen 308 ADNSLKVWVFDSGDGVPRLLRSRGGHSAPPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNV 387 (910)
T ss_pred CCCceeEEEeeCCCCcchheeeccCCCCCchheeeeccCcEEEEecccCcchhhhhhhHHHHhHhhcccccccccccccc
Confidence 99999999776443211 010000 0000000 0000
Q ss_pred -------CCCCc--------------ee--Eecccceeee-----------eecC------CCEeEEEEcCCCCEEEEEe
Q 047325 134 -------IKPSN--------------YI--EVRRHRTALW-----------IRHS------DAVSCMSLDQDCGLLYTAS 173 (368)
Q Consensus 134 -------~~~~~--------------~~--~~~~~~~~~~-----------~~~~------~~v~~~~~~~~~~~l~~~~ 173 (368)
..+.. .+ .........| ..+. ..+++++.++-|++.+.|+
T Consensus 388 ~~~~~~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~CGNF~~IG~ 467 (910)
T KOG1539|consen 388 FSTEKLKLPPIVEFAFENAREKEWDNVITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSFCGNFVFIGY 467 (910)
T ss_pred cchhhhcCCcceeeecccchhhhhcceeEEecCcceEEEEeccCcccccEEecCccccccCcceEEEEEeccCceEEEec
Confidence 00000 00 0000000111 1122 5688999999999999999
Q ss_pred CCCcEEEEEccCCeEEEEe---ecCCCceEEEEeCCCC-eEEEEcCCCeEEEEEcCCCCCCcccccceeeccccccEEEE
Q 047325 174 WDRTFKVWRISDSKCLESV---SAHDDAVNSVVSSSEG-LIFTGSADGTVKVWKREQHGKGTKHSLAQTLLKQECAVTAL 249 (368)
Q Consensus 174 ~d~~i~iwd~~~~~~~~~~---~~~~~~v~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~i~~~ 249 (368)
..|.|-+|++.+|.....+ +.|.++|+.++...-+ .+++++.+|.+++||..... ......-...+.++
T Consensus 468 S~G~Id~fNmQSGi~r~sf~~~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~-------l~~~l~l~~~~~~i 540 (910)
T KOG1539|consen 468 SKGTIDRFNMQSGIHRKSFGDSPAHKGEVTGLAVDGTNRLLVSAGADGILKFWDFKKKV-------LKKSLRLGSSITGI 540 (910)
T ss_pred cCCeEEEEEcccCeeecccccCccccCceeEEEecCCCceEEEccCcceEEEEecCCcc-------eeeeeccCCCccee
Confidence 9999999999999998888 5899999999998777 89999999999999997541 22222345568888
Q ss_pred EEcCCCCEEEEecCCCcEEEEeCCCccccceeeeccceEE--EEEEeCCCEEEEeeCCCeEEEEecCCCceeeeEeeecc
Q 047325 250 VVSSSRSIVYCGSSDGLVNFWEREKQLSHGGVLKGHKLAV--LCLAAAGKLVFSGSADKTICVWRRDGAIHTCLSVLTGH 327 (368)
Q Consensus 250 ~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h 327 (368)
.++.....++.+..|=.|+++|..+.+.. +.+.+|...+ ++|+|||++|++++.|++|++||+.++ .++-.+ .-
T Consensus 541 v~hr~s~l~a~~~ddf~I~vvD~~t~kvv-R~f~gh~nritd~~FS~DgrWlisasmD~tIr~wDlpt~--~lID~~-~v 616 (910)
T KOG1539|consen 541 VYHRVSDLLAIALDDFSIRVVDVVTRKVV-REFWGHGNRITDMTFSPDGRWLISASMDSTIRTWDLPTG--TLIDGL-LV 616 (910)
T ss_pred eeeehhhhhhhhcCceeEEEEEchhhhhh-HHhhccccceeeeEeCCCCcEEEEeecCCcEEEEeccCc--ceeeeE-ec
Confidence 88888889999999999999999986554 6778888887 566789999999999999999999887 445444 35
Q ss_pred ccCeeEEEEecCCeeeecCCcc
Q 047325 328 TGPVKCLAVEEDRDSSSSTSSC 349 (368)
Q Consensus 328 ~~~v~~l~~~~~~~~~~~~~~~ 349 (368)
..+.+++.|+|+|.+||++.-+
T Consensus 617 d~~~~sls~SPngD~LAT~Hvd 638 (910)
T KOG1539|consen 617 DSPCTSLSFSPNGDFLATVHVD 638 (910)
T ss_pred CCcceeeEECCCCCEEEEEEec
Confidence 6789999999999988887533
No 133
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.94 E-value=3.4e-24 Score=178.94 Aligned_cols=275 Identities=21% Similarity=0.266 Sum_probs=211.0
Q ss_pred CcCCcEEEEEecCC--EEEEccCCCcEEEEcCCcc---eeccc-CCCCCeeEEEEe-CCEEEEEeCCCeEEEEeecCCCc
Q 047325 42 REEGHIYSLAASKD--LLYTGSDSKNIRVWKNLKE---FCGFK-ASSGLVKAIVIS-GEKIFTGHQDGKIRVWKISPKNQ 114 (368)
Q Consensus 42 ~h~~~i~~~~~~~~--~l~s~~~dg~i~iw~~~~~---~~~~~-~~~~~v~~~~~~-~~~l~s~~~dg~i~vw~~~~~~~ 114 (368)
--..+|.++||+.+ .||.+-.||.|.+|++... ...+. +....|.+++|. +.+|++.+.+|.|.-||+.+.++
T Consensus 23 ~~Ps~I~slA~s~kS~~lAvsRt~g~IEiwN~~~~w~~~~vi~g~~drsIE~L~W~e~~RLFS~g~sg~i~EwDl~~lk~ 102 (691)
T KOG2048|consen 23 YKPSEIVSLAYSHKSNQLAVSRTDGNIEIWNLSNNWFLEPVIHGPEDRSIESLAWAEGGRLFSSGLSGSITEWDLHTLKQ 102 (691)
T ss_pred eeccceEEEEEeccCCceeeeccCCcEEEEccCCCceeeEEEecCCCCceeeEEEccCCeEEeecCCceEEEEecccCce
Confidence 34678999999854 8999999999999998743 22233 456789999999 99999999999999999998876
Q ss_pred cccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcCCCCEEEEEeCCCcEEEEEccCCeEEE--Ee
Q 047325 115 SVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCGLLYTASWDRTFKVWRISDSKCLE--SV 192 (368)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~--~~ 192 (368)
...... ..+.|.+++.+|.+..++.|+.||.+..++...++... .+
T Consensus 103 ~~~~d~--------------------------------~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I~~~r~l 150 (691)
T KOG2048|consen 103 KYNIDS--------------------------------NGGAIWSIAINPENTILAIGCDDGVLYDFSIGPDKITYKRSL 150 (691)
T ss_pred eEEecC--------------------------------CCcceeEEEeCCccceEEeecCCceEEEEecCCceEEEEeec
Confidence 554443 66899999999999999999999988888887776543 34
Q ss_pred ecCCCceEEEEeCCCC-eEEEEcCCCeEEEEEcCCCCCCccc--ccceeeccccccEEEEEEcCCCCEEEEecCCCcEEE
Q 047325 193 SAHDDAVNSVVSSSEG-LIFTGSADGTVKVWKREQHGKGTKH--SLAQTLLKQECAVTALVVSSSRSIVYCGSSDGLVNF 269 (368)
Q Consensus 193 ~~~~~~v~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~--~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i 269 (368)
...++.|.++.|+|++ .+++|+.||.|++||...+...... +....-.....-|.++.|-.+ ..|++|.+.|.|.+
T Consensus 151 ~rq~sRvLslsw~~~~~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd-~tI~sgDS~G~V~F 229 (691)
T KOG2048|consen 151 MRQKSRVLSLSWNPTGTKIAGGSIDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRD-STIASGDSAGTVTF 229 (691)
T ss_pred ccccceEEEEEecCCccEEEecccCceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEeec-CcEEEecCCceEEE
Confidence 4456899999999999 7999999999999999876442100 011111123445778887754 57999999999999
Q ss_pred EeCCCccccceeeeccceEEEEEEe--CCCEEEEeeCCCeEEEEecCCCce--eeeEeeeccccCeeEEEEecCCeeeec
Q 047325 270 WEREKQLSHGGVLKGHKLAVLCLAA--AGKLVFSGSADKTICVWRRDGAIH--TCLSVLTGHTGPVKCLAVEEDRDSSSS 345 (368)
Q Consensus 270 ~d~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~~~~~dg~i~iw~~~~~~~--~~~~~~~~h~~~v~~l~~~~~~~~~~~ 345 (368)
||...+... .....|...|.++.. +++++++++.|+.|.-|...+... ........|...|.+++..++
T Consensus 230 Wd~~~gTLi-qS~~~h~adVl~Lav~~~~d~vfsaGvd~~ii~~~~~~~~~~wv~~~~r~~h~hdvrs~av~~~------ 302 (691)
T KOG2048|consen 230 WDSIFGTLI-QSHSCHDADVLALAVADNEDRVFSAGVDPKIIQYSLTTNKSEWVINSRRDLHAHDVRSMAVIEN------ 302 (691)
T ss_pred EcccCcchh-hhhhhhhcceeEEEEcCCCCeEEEccCCCceEEEEecCCccceeeeccccCCcccceeeeeecc------
Confidence 999887665 456678888877764 678999999999999987765422 233334568888999999887
Q ss_pred CCcceEEEEEeeCCccccc
Q 047325 346 TSSCAQRWIVYSGSLDKSD 364 (368)
Q Consensus 346 ~~~~~~~w~l~sg~~D~~v 364 (368)
.+++|+.|..+
T Consensus 303 --------~l~sgG~d~~l 313 (691)
T KOG2048|consen 303 --------ALISGGRDFTL 313 (691)
T ss_pred --------eEEecceeeEE
Confidence 35566666554
No 134
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.94 E-value=3.5e-25 Score=172.60 Aligned_cols=207 Identities=19% Similarity=0.359 Sum_probs=167.6
Q ss_pred CceeeeccCcCCcEEEEEec--CC--EEEEccCCCcEEEEcCC------------------cceecccCCCCCeeEEEEe
Q 047325 34 NGLIGSLVREEGHIYSLAAS--KD--LLYTGSDSKNIRVWKNL------------------KEFCGFKASSGLVKAIVIS 91 (368)
Q Consensus 34 ~~~~~~~~~h~~~i~~~~~~--~~--~l~s~~~dg~i~iw~~~------------------~~~~~~~~~~~~v~~~~~~ 91 (368)
...-....+|.+.|+.+... ++ +.++=+..|.|.||++. +++.++.+|...=++|+|+
T Consensus 141 P~~~~~~i~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWS 220 (440)
T KOG0302|consen 141 PQIEMKSIPHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWS 220 (440)
T ss_pred ccccccccccccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeecc
Confidence 34445566788887777654 23 78888999999999863 2355677888888999998
Q ss_pred ---CCEEEEEeCCCeEEEEeecCCCccccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcCC-CC
Q 047325 92 ---GEKIFTGHQDGKIRVWKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQD-CG 167 (368)
Q Consensus 92 ---~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~ 167 (368)
...|++|..-+.|++|...++.-.. ....+.+|+..|-.++|+|. ..
T Consensus 221 p~~~g~LlsGDc~~~I~lw~~~~g~W~v-----------------------------d~~Pf~gH~~SVEDLqWSptE~~ 271 (440)
T KOG0302|consen 221 PIKTGRLLSGDCVKGIHLWEPSTGSWKV-----------------------------DQRPFTGHTKSVEDLQWSPTEDG 271 (440)
T ss_pred cccccccccCccccceEeeeeccCceee-----------------------------cCccccccccchhhhccCCccCc
Confidence 4578999999999999998865222 12234569999999999995 45
Q ss_pred EEEEEeCCCcEEEEEccCC---eEEEEeecCCCceEEEEeCCCC-eEEEEcCCCeEEEEEcCCCCCCcccccceeecccc
Q 047325 168 LLYTASWDRTFKVWRISDS---KCLESVSAHDDAVNSVVSSSEG-LIFTGSADGTVKVWKREQHGKGTKHSLAQTLLKQE 243 (368)
Q Consensus 168 ~l~~~~~d~~i~iwd~~~~---~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~ 243 (368)
.|++|+.||+|+|||++.+ .++. .++|...|+.|.|+..- +|++|+.||+++|||+|+.+.. .++..+..|.
T Consensus 272 vfaScS~DgsIrIWDiRs~~~~~~~~-~kAh~sDVNVISWnr~~~lLasG~DdGt~~iwDLR~~~~~---~pVA~fk~Hk 347 (440)
T KOG0302|consen 272 VFASCSCDGSIRIWDIRSGPKKAAVS-TKAHNSDVNVISWNRREPLLASGGDDGTLSIWDLRQFKSG---QPVATFKYHK 347 (440)
T ss_pred eEEeeecCceEEEEEecCCCccceeE-eeccCCceeeEEccCCcceeeecCCCceEEEEEhhhccCC---CcceeEEecc
Confidence 8999999999999999987 3333 37899999999999887 8999999999999999987442 5778899999
Q ss_pred ccEEEEEEcCC-CCEEEEecCCCcEEEEeCC
Q 047325 244 CAVTALVVSSS-RSIVYCGSSDGLVNFWERE 273 (368)
Q Consensus 244 ~~i~~~~~~~~-~~~l~~~~~dg~i~i~d~~ 273 (368)
.+|+++.|+|. ...|++++.|.+|.+||+.
T Consensus 348 ~pItsieW~p~e~s~iaasg~D~QitiWDls 378 (440)
T KOG0302|consen 348 APITSIEWHPHEDSVIAASGEDNQITIWDLS 378 (440)
T ss_pred CCeeEEEeccccCceEEeccCCCcEEEEEee
Confidence 99999999994 4688889999999999986
No 135
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.94 E-value=2.8e-25 Score=179.18 Aligned_cols=254 Identities=13% Similarity=0.216 Sum_probs=204.0
Q ss_pred EEEEEecCC-EEE--EccCCCcEEEEcCCcc---e---ecccCCCCCeeEEEEe--CCEEEEEeCCCeEEEEeecCCCcc
Q 047325 47 IYSLAASKD-LLY--TGSDSKNIRVWKNLKE---F---CGFKASSGLVKAIVIS--GEKIFTGHQDGKIRVWKISPKNQS 115 (368)
Q Consensus 47 i~~~~~~~~-~l~--s~~~dg~i~iw~~~~~---~---~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~vw~~~~~~~~ 115 (368)
+.++.|+.+ +|+ +-+.|..|++|.-..+ + ....+. .-.|++.. ..|+++|+..+.|+|||+......
T Consensus 37 ~~s~~w~~~n~lvvas~~gdk~~~~~~K~g~~~~Vp~~~k~~gd--~~~Cv~~~s~S~y~~sgG~~~~Vkiwdl~~kl~h 114 (673)
T KOG4378|consen 37 DFSFNWQRRNFLVVASMAGDKVMRIKEKDGKTPEVPRVRKLTGD--NAFCVACASQSLYEISGGQSGCVKIWDLRAKLIH 114 (673)
T ss_pred ceeeeccccceEEEeecCCceeEEEecccCCCCccceeeccccc--hHHHHhhhhcceeeeccCcCceeeehhhHHHHHh
Confidence 888888755 344 4466888999975433 1 112222 22233222 579999999999999999843322
Q ss_pred ccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcCCCCEEEEEeCCCcEEEEEccCCeEEEEeecC
Q 047325 116 VHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCGLLYTASWDRTFKVWRISDSKCLESVSAH 195 (368)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~ 195 (368)
. .+.+|.+.|+++.++-...+|++++..|.|.|..+.++.....|...
T Consensus 115 r--------------------------------~lkdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~~tt~f~~~ 162 (673)
T KOG4378|consen 115 R--------------------------------FLKDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQKTTTFTID 162 (673)
T ss_pred h--------------------------------hccCCcceeEEEEecCCcceeEEeccCCcEEEEecccCccccceecC
Confidence 1 12349999999999999999999999999999999999888888755
Q ss_pred -CCceEEEEeCCCC--eEEEEcCCCeEEEEEcCCCCCCcccccceeeccccccEEEEEEcC-CCCEEEEecCCCcEEEEe
Q 047325 196 -DDAVNSVVSSSEG--LIFTGSADGTVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSS-SRSIVYCGSSDGLVNFWE 271 (368)
Q Consensus 196 -~~~v~~~~~~~~~--~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~i~d 271 (368)
...|.-+.+++.. +|.+++.+|.|.+||+..... .......|..+...++|+| +..+|++.+.|..|.+||
T Consensus 163 sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~g~sp-----~~~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD 237 (673)
T KOG4378|consen 163 SGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMSP-----IFHASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYD 237 (673)
T ss_pred CCCeEEEeecccccceeeEeeccCCeEEEEeccCCCc-----ccchhhhccCCcCcceecCCccceEEEecccceEEEee
Confidence 4456688999987 888999999999999975432 4455667999999999999 456888899999999999
Q ss_pred CCCccccceeeeccceEEEEEEeCCCEEEEeeCCCeEEEEecCCCceeeeEeeeccccCeeEEEEecCC
Q 047325 272 REKQLSHGGVLKGHKLAVLCLAAAGKLVFSGSADKTICVWRRDGAIHTCLSVLTGHTGPVKCLAVEEDR 340 (368)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~l~~~~~~ 340 (368)
.+...........|+...++|.++|.+|++|...|.|..||++.. ..++..+..|...|++++|-|..
T Consensus 238 ~~s~~s~~~l~y~~Plstvaf~~~G~~L~aG~s~G~~i~YD~R~~-k~Pv~v~sah~~sVt~vafq~s~ 305 (673)
T KOG4378|consen 238 IRSQASTDRLTYSHPLSTVAFSECGTYLCAGNSKGELIAYDMRST-KAPVAVRSAHDASVTRVAFQPSP 305 (673)
T ss_pred cccccccceeeecCCcceeeecCCceEEEeecCCceEEEEecccC-CCCceEeeecccceeEEEeeecc
Confidence 998777777778899899999999999999999999999999865 47788899999999999998875
No 136
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.94 E-value=2.6e-25 Score=176.71 Aligned_cols=224 Identities=18% Similarity=0.274 Sum_probs=175.4
Q ss_pred CCEEEEccCCCcEEEEcCC--c---c------------------eecccCCCCCeeEEEEe---CCEEEEEeCCCeEEEE
Q 047325 54 KDLLYTGSDSKNIRVWKNL--K---E------------------FCGFKASSGLVKAIVIS---GEKIFTGHQDGKIRVW 107 (368)
Q Consensus 54 ~~~l~s~~~dg~i~iw~~~--~---~------------------~~~~~~~~~~v~~~~~~---~~~l~s~~~dg~i~vw 107 (368)
|+++|.|..|..|.|||+. . + -....+|+..|.++.|+ .+.|++|+.|.+|++|
T Consensus 192 gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~lW 271 (463)
T KOG0270|consen 192 GNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRNVLASGSADKTVKLW 271 (463)
T ss_pred cceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccceeEEecCCCceEEEE
Confidence 4599999999999999963 0 0 00123689999999998 6789999999999999
Q ss_pred eecCCCccccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcCC-CCEEEEEeCCCcEEEEEccCC
Q 047325 108 KISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQD-CGLLYTASWDRTFKVWRISDS 186 (368)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~d~~i~iwd~~~~ 186 (368)
|+.++++...... |.+.|.+++|+|. ...|++|+.|+++.+.|.+..
T Consensus 272 D~~~g~p~~s~~~--------------------------------~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~ 319 (463)
T KOG0270|consen 272 DVDTGKPKSSITH--------------------------------HGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDP 319 (463)
T ss_pred EcCCCCcceehhh--------------------------------cCCceeEEEecCCCceEEEeccccceEEeeeccCc
Confidence 9999986554442 8999999999994 568999999999999999853
Q ss_pred eEEEEeecCCCceEEEEeCCCC--eEEEEcCCCeEEEEEcCCCCCCcccccceeeccccccEEEEEEcCC-CCEEEEecC
Q 047325 187 KCLESVSAHDDAVNSVVSSSEG--LIFTGSADGTVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSSS-RSIVYCGSS 263 (368)
Q Consensus 187 ~~~~~~~~~~~~v~~~~~~~~~--~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~l~~~~~ 263 (368)
......-...+.|-.++|.|.. .++++..||.|+-+|+|..++ ++..+..|.++|.++++++. ..++++++.
T Consensus 320 ~~s~~~wk~~g~VEkv~w~~~se~~f~~~tddG~v~~~D~R~~~~-----~vwt~~AHd~~ISgl~~n~~~p~~l~t~s~ 394 (463)
T KOG0270|consen 320 SNSGKEWKFDGEVEKVAWDPHSENSFFVSTDDGTVYYFDIRNPGK-----PVWTLKAHDDEISGLSVNIQTPGLLSTAST 394 (463)
T ss_pred cccCceEEeccceEEEEecCCCceeEEEecCCceEEeeecCCCCC-----ceeEEEeccCCcceEEecCCCCcceeeccc
Confidence 3332222346788999999987 888999999999999998754 78888999999999999884 457889999
Q ss_pred CCcEEEEeCCCccccceeeeccc---eEEEEEEeC---CCEEEEeeCCCeEEEEecCCC
Q 047325 264 DGLVNFWEREKQLSHGGVLKGHK---LAVLCLAAA---GKLVFSGSADKTICVWRRDGA 316 (368)
Q Consensus 264 dg~i~i~d~~~~~~~~~~~~~~~---~~~~~~~~~---~~~l~~~~~dg~i~iw~~~~~ 316 (368)
|+.|++|++...... ....|. ....|++++ .-.++.|+..+.++|||+.+.
T Consensus 395 d~~Vklw~~~~~~~~--~v~~~~~~~~rl~c~~~~~~~a~~la~GG~k~~~~vwd~~~~ 451 (463)
T KOG0270|consen 395 DKVVKLWKFDVDSPK--SVKEHSFKLGRLHCFALDPDVAFTLAFGGEKAVLRVWDIFTN 451 (463)
T ss_pred cceEEEEeecCCCCc--ccccccccccceeecccCCCcceEEEecCccceEEEeecccC
Confidence 999999998743221 111221 123455543 457888999999999998664
No 137
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.93 E-value=5.6e-25 Score=177.76 Aligned_cols=228 Identities=17% Similarity=0.261 Sum_probs=179.8
Q ss_pred cCCCCCeeEEEEe--CCEEEEEeCCCeEEEEeecCCCccccccCCccccceeeeeccCCCCceeEecccceeeeeecCCC
Q 047325 79 KASSGLVKAIVIS--GEKIFTGHQDGKIRVWKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDA 156 (368)
Q Consensus 79 ~~~~~~v~~~~~~--~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (368)
..|..-|.++.++ .++++||+ .|.|+|||+........... ... ....+.
T Consensus 416 L~HGEvVcAvtIS~~trhVyTgG-kgcVKVWdis~pg~k~Pvsq--Ldc-------------------------l~rdny 467 (705)
T KOG0639|consen 416 LAHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISQPGNKSPVSQ--LDC-------------------------LNRDNY 467 (705)
T ss_pred hccCcEEEEEEecCCcceeEecC-CCeEEEeeccCCCCCCcccc--ccc-------------------------cCcccc
Confidence 3588888888888 66888887 57999999976532111110 000 003467
Q ss_pred EeEEEEcCCCCEEEEEeCCCcEEEEEccCCeEE--EEeecCCCceEEEEeCCCC-eEEEEcCCCeEEEEEcCCCCCCccc
Q 047325 157 VSCMSLDQDCGLLYTASWDRTFKVWRISDSKCL--ESVSAHDDAVNSVVSSSEG-LIFTGSADGTVKVWKREQHGKGTKH 233 (368)
Q Consensus 157 v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~--~~~~~~~~~v~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~ 233 (368)
|+++...||++.|++|+.-.++.|||+....+. ..+........+++.+||. ..+++..||.|.|||+++.
T Consensus 468 iRSckL~pdgrtLivGGeastlsiWDLAapTprikaeltssapaCyALa~spDakvcFsccsdGnI~vwDLhnq------ 541 (705)
T KOG0639|consen 468 IRSCKLLPDGRTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQ------ 541 (705)
T ss_pred eeeeEecCCCceEEeccccceeeeeeccCCCcchhhhcCCcchhhhhhhcCCccceeeeeccCCcEEEEEcccc------
Confidence 889999999999999999999999999765543 3333344567788999999 8889999999999999876
Q ss_pred ccceeeccccccEEEEEEcCCCCEEEEecCCCcEEEEeCCCccccceeeeccceEEEEEEeCCCEEEEeeCCCeEEEEec
Q 047325 234 SLAQTLLKQECAVTALVVSSSRSIVYCGSSDGLVNFWEREKQLSHGGVLKGHKLAVLCLAAAGKLVFSGSADKTICVWRR 313 (368)
Q Consensus 234 ~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~ 313 (368)
..++.+.+|...+.||.++++|..|.+|+-|++|+.||++++..+...........+..+|++.+|+.|-+++.+-|-..
T Consensus 542 ~~VrqfqGhtDGascIdis~dGtklWTGGlDntvRcWDlregrqlqqhdF~SQIfSLg~cP~~dWlavGMens~vevlh~ 621 (705)
T KOG0639|consen 542 TLVRQFQGHTDGASCIDISKDGTKLWTGGLDNTVRCWDLREGRQLQQHDFSSQIFSLGYCPTGDWLAVGMENSNVEVLHT 621 (705)
T ss_pred eeeecccCCCCCceeEEecCCCceeecCCCccceeehhhhhhhhhhhhhhhhhheecccCCCccceeeecccCcEEEEec
Confidence 46889999999999999999999999999999999999998877655444444455666789999999999999988866
Q ss_pred CCCceeeeEeeeccccCeeEEEEecCCeee
Q 047325 314 DGAIHTCLSVLTGHTGPVKCLAVEEDRDSS 343 (368)
Q Consensus 314 ~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~ 343 (368)
... ....+.-|..-|.++.|.+-|+++
T Consensus 622 skp---~kyqlhlheScVLSlKFa~cGkwf 648 (705)
T KOG0639|consen 622 SKP---EKYQLHLHESCVLSLKFAYCGKWF 648 (705)
T ss_pred CCc---cceeecccccEEEEEEecccCcee
Confidence 543 345566799999999999999943
No 138
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.93 E-value=1.5e-24 Score=179.91 Aligned_cols=295 Identities=18% Similarity=0.234 Sum_probs=200.1
Q ss_pred eeeccCcCCcEEEEEecCC--EEEEccCCCcEEEEcCCcc----eecccCCCCCeeEEEEe---CCEEEEEeCCCeEEEE
Q 047325 37 IGSLVREEGHIYSLAASKD--LLYTGSDSKNIRVWKNLKE----FCGFKASSGLVKAIVIS---GEKIFTGHQDGKIRVW 107 (368)
Q Consensus 37 ~~~~~~h~~~i~~~~~~~~--~l~s~~~dg~i~iw~~~~~----~~~~~~~~~~v~~~~~~---~~~l~s~~~dg~i~vw 107 (368)
++....|.++|..+.+-+. .|++++.|.++++||+.+. ...+.+|.+.|.+++|. ...+++|+.||.|.||
T Consensus 93 lk~~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s~l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illW 172 (720)
T KOG0321|consen 93 LKKPLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTSRLVGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLW 172 (720)
T ss_pred hcccccccceeEeeccCCCceeEEEccCCceeeeeeeccceeecceeecccccccchhhhccCCCcceeeccCCCcEEEE
Confidence 4556789999999998744 9999999999999998743 33478999999999997 6789999999999999
Q ss_pred eecCCCccccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeE---EEEcCCCCEEEEEeC-CCcEEEEEc
Q 047325 108 KISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSC---MSLDQDCGLLYTASW-DRTFKVWRI 183 (368)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~---~~~~~~~~~l~~~~~-d~~i~iwd~ 183 (368)
|+.-........... ......... + .-......+...+..+...|.+ +.+..|...|++++. |+.|++||+
T Consensus 173 D~R~n~~d~~e~~~~--~~~~~~n~~--p-tpskp~~kr~~k~kA~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDL 247 (720)
T KOG0321|consen 173 DCRCNGVDALEEFDN--RIYGRHNTA--P-TPSKPLKKRIRKWKAASNTIFSSVTVVLFKDESTLASAGAADSTIKVWDL 247 (720)
T ss_pred EEeccchhhHHHHhh--hhhccccCC--C-CCCchhhccccccccccCceeeeeEEEEEeccceeeeccCCCcceEEEee
Confidence 997654211111000 000000000 0 0011112222333345555555 555678889999988 999999999
Q ss_pred cCCeEEEEe--------ecC---CCceEEEEeCCCC-eEEEEcCCCeEEEEEcCCCCCCcccccceeeccccc--cEEEE
Q 047325 184 SDSKCLESV--------SAH---DDAVNSVVSSSEG-LIFTGSADGTVKVWKREQHGKGTKHSLAQTLLKQEC--AVTAL 249 (368)
Q Consensus 184 ~~~~~~~~~--------~~~---~~~v~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~--~i~~~ 249 (368)
++....... ..| .-.+.++.....| +|++.+.|+.|++|++..... .+...+.++.. .-..-
T Consensus 248 Rk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~AsCtD~sIy~ynm~s~s~----sP~~~~sg~~~~sf~vks 323 (720)
T KOG0321|consen 248 RKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFASCTDNSIYFYNMRSLSI----SPVAEFSGKLNSSFYVKS 323 (720)
T ss_pred cccccccccCCCcccCccCcccceeeeEEEEecCCCCeEEEEecCCcEEEEeccccCc----CchhhccCcccceeeeee
Confidence 876543322 122 2356677777777 777777799999999987643 23333333221 12233
Q ss_pred EEcCCCCEEEEecCCCcEEEEeCCCccccceeeeccceEEEEEEeC---CCEEEEeeCCCeEEEEecCCCc---------
Q 047325 250 VVSSSRSIVYCGSSDGLVNFWEREKQLSHGGVLKGHKLAVLCLAAA---GKLVFSGSADKTICVWRRDGAI--------- 317 (368)
Q Consensus 250 ~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~---~~~l~~~~~dg~i~iw~~~~~~--------- 317 (368)
..+|++.++++|+.|...++|.+.+.+.....+.+|...|.++.|. -.-++++++|..+++|++..+-
T Consensus 324 ~lSpd~~~l~SgSsd~~ayiw~vs~~e~~~~~l~Ght~eVt~V~w~pS~~t~v~TcSdD~~~kiW~l~~~l~e~~~adk~ 403 (720)
T KOG0321|consen 324 ELSPDDCSLLSGSSDEQAYIWVVSSPEAPPALLLGHTREVTTVRWLPSATTPVATCSDDFRVKIWRLSNGLEEIYAADKD 403 (720)
T ss_pred ecCCCCceEeccCCCcceeeeeecCccCChhhhhCcceEEEEEeeccccCCCceeeccCcceEEEeccCchhhccccccc
Confidence 4689999999999999999999999888888999999999888763 3346667999999999985431
Q ss_pred ---eeeeEeeeccccCeeEEEEecCC
Q 047325 318 ---HTCLSVLTGHTGPVKCLAVEEDR 340 (368)
Q Consensus 318 ---~~~~~~~~~h~~~v~~l~~~~~~ 340 (368)
......+++|...+..+.++-.+
T Consensus 404 s~v~~~~~rfk~~~p~~~nv~ss~~~ 429 (720)
T KOG0321|consen 404 SIVYEYSRRFKGHLPQVLNVNSSLRK 429 (720)
T ss_pred hhhhhhhhhhhccccccccccccccc
Confidence 12233445666666555555443
No 139
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.93 E-value=8.9e-23 Score=169.72 Aligned_cols=259 Identities=15% Similarity=0.122 Sum_probs=175.0
Q ss_pred CEEEEccCCCcEEEEcCCc--ceecccCCCCCeeEEEEe--CCEE-EEEeCCCeEEEEeecCCCccccccCCccccceee
Q 047325 55 DLLYTGSDSKNIRVWKNLK--EFCGFKASSGLVKAIVIS--GEKI-FTGHQDGKIRVWKISPKNQSVHKRAGTLPTLKDI 129 (368)
Q Consensus 55 ~~l~s~~~dg~i~iw~~~~--~~~~~~~~~~~v~~~~~~--~~~l-~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~ 129 (368)
+.+++++.|+.|++||+.+ ....+..+. .+.+++|+ ++.+ ++++.++.|++||..+++.......
T Consensus 2 ~~~~s~~~d~~v~~~d~~t~~~~~~~~~~~-~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~--------- 71 (300)
T TIGR03866 2 KAYVSNEKDNTISVIDTATLEVTRTFPVGQ-RPRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTLPS--------- 71 (300)
T ss_pred cEEEEecCCCEEEEEECCCCceEEEEECCC-CCCceEECCCCCEEEEEECCCCeEEEEECCCCcEEEeccC---------
Confidence 5788999999999999864 344455443 35678887 5565 5677899999999987653221110
Q ss_pred eeccCCCCceeEecccceeeeeecCCCEeEEEEcCCCCEEEEE-eCCCcEEEEEccCCeEEEEeecCCCceEEEEeCCCC
Q 047325 130 FKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCGLLYTA-SWDRTFKVWRISDSKCLESVSAHDDAVNSVVSSSEG 208 (368)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~ 208 (368)
+ ..+..+.++|+++.++++ +.++.|++||+.+++.+..+.. ...+.+++++|++
T Consensus 72 -----------------------~-~~~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~~-~~~~~~~~~~~dg 126 (300)
T TIGR03866 72 -----------------------G-PDPELFALHPNGKILYIANEDDNLVTVIDIETRKVLAEIPV-GVEPEGMAVSPDG 126 (300)
T ss_pred -----------------------C-CCccEEEECCCCCEEEEEcCCCCeEEEEECCCCeEEeEeeC-CCCcceEEECCCC
Confidence 2 224568899999877655 5689999999999888777763 3346789999999
Q ss_pred -eEEEEcCCC-eEEEEEcCCCCCCcccccceeeccccccEEEEEEcCCCCEEEEe-cCCCcEEEEeCCCccccceee-ec
Q 047325 209 -LIFTGSADG-TVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSSSRSIVYCG-SSDGLVNFWEREKQLSHGGVL-KG 284 (368)
Q Consensus 209 -~l~~~~~dg-~i~i~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~~dg~i~i~d~~~~~~~~~~~-~~ 284 (368)
.++++..++ .+.+||.+... ...... ....+..++|+|++++|+.+ ..++.|++||+++++...... ..
T Consensus 127 ~~l~~~~~~~~~~~~~d~~~~~------~~~~~~-~~~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~~ 199 (300)
T TIGR03866 127 KIVVNTSETTNMAHFIDTKTYE------IVDNVL-VDQRPRFAEFTADGKELWVSSEIGGTVSVIDVATRKVIKKITFEI 199 (300)
T ss_pred CEEEEEecCCCeEEEEeCCCCe------EEEEEE-cCCCccEEEECCCCCEEEEEcCCCCEEEEEEcCcceeeeeeeecc
Confidence 777776654 56778886542 111111 22345778999999988654 468999999999765432221 10
Q ss_pred ---c----ceEEEEEEeCCCEEEE-eeCCCeEEEEecCCCceeeeEeeeccccCeeEEEEecCCeeeecC---CcceEEE
Q 047325 285 ---H----KLAVLCLAAAGKLVFS-GSADKTICVWRRDGAIHTCLSVLTGHTGPVKCLAVEEDRDSSSST---SSCAQRW 353 (368)
Q Consensus 285 ---~----~~~~~~~~~~~~~l~~-~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~---~~~~~~w 353 (368)
+ ...-.+++++++++++ .+.++.+.+||+++. +.+..+ .+...+.+++|+|+++.++++ ++.+.+|
T Consensus 200 ~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~~~--~~~~~~-~~~~~~~~~~~~~~g~~l~~~~~~~~~i~v~ 276 (300)
T TIGR03866 200 PGVHPEAVQPVGIKLTKDGKTAFVALGPANRVAVVDAKTY--EVLDYL-LVGQRVWQLAFTPDEKYLLTTNGVSNDVSVI 276 (300)
T ss_pred cccccccCCccceEECCCCCEEEEEcCCCCeEEEEECCCC--cEEEEE-EeCCCcceEEECCCCCEEEEEcCCCCeEEEE
Confidence 1 1112567888987554 455778999998765 333333 245579999999999976543 3456666
Q ss_pred EEeeC
Q 047325 354 IVYSG 358 (368)
Q Consensus 354 ~l~sg 358 (368)
.+.++
T Consensus 277 d~~~~ 281 (300)
T TIGR03866 277 DVAAL 281 (300)
T ss_pred ECCCC
Confidence 65544
No 140
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.93 E-value=3.7e-26 Score=191.97 Aligned_cols=229 Identities=22% Similarity=0.383 Sum_probs=193.8
Q ss_pred eccCcCCcEEEEEe--cCCEEEEccCCCcEEEEcCCcc--eecccCCCCCeeEEEEe--CCEEEEEeCCCeEEEEeecCC
Q 047325 39 SLVREEGHIYSLAA--SKDLLYTGSDSKNIRVWKNLKE--FCGFKASSGLVKAIVIS--GEKIFTGHQDGKIRVWKISPK 112 (368)
Q Consensus 39 ~~~~h~~~i~~~~~--~~~~l~s~~~dg~i~iw~~~~~--~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~vw~~~~~ 112 (368)
.+..|...|.++.. +.+.+++|+.|..+-+|...+. +..+.+|..+|.++.|+ ...|++|+.+|+|++||++..
T Consensus 23 ~~~~hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp~~i~S~~~hespIeSl~f~~~E~LlaagsasgtiK~wDleeA 102 (825)
T KOG0267|consen 23 EFVAHSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKPNAITSLTGHESPIESLTFDTSERLLAAGSASGTIKVWDLEEA 102 (825)
T ss_pred hhhhhhhhhceeeeeccceeeccCCCceeeccccccCCchhheeeccCCcceeeecCcchhhhcccccCCceeeeehhhh
Confidence 45678888888875 4569999999999999988754 45688999999999998 668889999999999999966
Q ss_pred CccccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcCCCCEEEEEeCCCcEEEEEccCCeEEEEe
Q 047325 113 NQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCGLLYTASWDRTFKVWRISDSKCLESV 192 (368)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~ 192 (368)
... +.+.+|...+.++.|+|-+.+++.|+.|+.+++||.+..-+...+
T Consensus 103 k~v--------------------------------rtLtgh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk~Gc~~~~ 150 (825)
T KOG0267|consen 103 KIV--------------------------------RTLTGHLLNITSVDFHPYGEFFASGSTDTDLKIWDIRKKGCSHTY 150 (825)
T ss_pred hhh--------------------------------hhhhccccCcceeeeccceEEeccccccccceehhhhccCceeee
Confidence 532 234569999999999999999999999999999999988999999
Q ss_pred ecCCCceEEEEeCCCC-eEEEEcCCCeEEEEEcCCCCCCcccccceeeccccccEEEEEEcCCCCEEEEecCCCcEEEEe
Q 047325 193 SAHDDAVNSVVSSSEG-LIFTGSADGTVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSSSRSIVYCGSSDGLVNFWE 271 (368)
Q Consensus 193 ~~~~~~v~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d 271 (368)
++|...+.++.|+|+| +++.++.|..++|||+..+ .....+..|++.+..+.|+|..-+++.|+.|+++++||
T Consensus 151 ~s~~~vv~~l~lsP~Gr~v~~g~ed~tvki~d~~ag------k~~~ef~~~e~~v~sle~hp~e~Lla~Gs~d~tv~f~d 224 (825)
T KOG0267|consen 151 KSHTRVVDVLRLSPDGRWVASGGEDNTVKIWDLTAG------KLSKEFKSHEGKVQSLEFHPLEVLLAPGSSDRTVRFWD 224 (825)
T ss_pred cCCcceeEEEeecCCCceeeccCCcceeeeeccccc------ccccccccccccccccccCchhhhhccCCCCceeeeec
Confidence 9999999999999999 9999999999999999766 46778888999999999999999999999999999999
Q ss_pred CCCccccceeeeccceEE--EEEEeCCCEEEEeeCCC
Q 047325 272 REKQLSHGGVLKGHKLAV--LCLAAAGKLVFSGSADK 306 (368)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~~~dg 306 (368)
+++.+.+... ......+ ..|.+++..+++|..+.
T Consensus 225 letfe~I~s~-~~~~~~v~~~~fn~~~~~~~~G~q~s 260 (825)
T KOG0267|consen 225 LETFEVISSG-KPETDGVRSLAFNPDGKIVLSGEQIS 260 (825)
T ss_pred cceeEEeecc-CCccCCceeeeecCCceeeecCchhh
Confidence 9976554322 2223334 55667788888876654
No 141
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.93 E-value=3.5e-24 Score=179.32 Aligned_cols=328 Identities=16% Similarity=0.183 Sum_probs=227.8
Q ss_pred eeeeccCcCCcEEEEEec--CCEEEEccCCCcEEEEcCC------cceecccCCCCCeeEEEEe--CCEEEEEeCCCeEE
Q 047325 36 LIGSLVREEGHIYSLAAS--KDLLYTGSDSKNIRVWKNL------KEFCGFKASSGLVKAIVIS--GEKIFTGHQDGKIR 105 (368)
Q Consensus 36 ~~~~~~~h~~~i~~~~~~--~~~l~s~~~dg~i~iw~~~------~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~ 105 (368)
....+.||.+.|.+++|+ |++|++.|.|-+-|++-.- .++...+.|....+|+++- ...+++|.....+|
T Consensus 353 ~~~~iSGH~~~V~dv~W~psGeflLsvs~DQTTRlFa~wg~q~~wHEiaRPQiHGyDl~c~~~vn~~~~FVSgAdEKVlR 432 (764)
T KOG1063|consen 353 QEPVISGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFARWGRQQEWHEIARPQIHGYDLTCLSFVNEDLQFVSGADEKVLR 432 (764)
T ss_pred eccccccccccceeeeecCCCCEEEEeccccceeeecccccccceeeecccccccccceeeehccCCceeeecccceeee
Confidence 344578999999999998 6699999999999998654 3455667899999999987 45788888899999
Q ss_pred EEeecCCCcc--------------ccccCCccccc----eeeeecc----------------CCCCceeEe---------
Q 047325 106 VWKISPKNQS--------------VHKRAGTLPTL----KDIFKSS----------------IKPSNYIEV--------- 142 (368)
Q Consensus 106 vw~~~~~~~~--------------~~~~~~~~~~~----~~~~~~~----------------~~~~~~~~~--------- 142 (368)
+++....-.. ........+.. +..+... ..+......
T Consensus 433 vF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~~L~ePP~EdqLq~~ 512 (764)
T KOG1063|consen 433 VFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAAPCELTEPPTEDQLQQN 512 (764)
T ss_pred eecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeeecccccCchhccCCChHHHHHHh
Confidence 9986421000 00000000000 0000000 000000000
Q ss_pred -cccceeeeeecCCCEeEEEEcCCCCEEEEEeCC-----CcEEEEEccCCeEEEEeecCCCceEEEEeCCCC-eEEEEcC
Q 047325 143 -RRHRTALWIRHSDAVSCMSLDQDCGLLYTASWD-----RTFKVWRISDSKCLESVSAHDDAVNSVVSSSEG-LIFTGSA 215 (368)
Q Consensus 143 -~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~ 215 (368)
--.....+.||...|.+++.+|+++++++++.. ..|++|+..+-...+.+.+|.-.|+.++|+||+ +|++.+.
T Consensus 513 tLwPEv~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~~~~L~~HsLTVT~l~FSpdg~~LLsvsR 592 (764)
T KOG1063|consen 513 TLWPEVHKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQVQELEGHSLTVTRLAFSPDGRYLLSVSR 592 (764)
T ss_pred ccchhhHHhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccchhhhheecccceEEEEEEECCCCcEEEEeec
Confidence 001223457899999999999999999999864 369999999988888999999999999999999 9999999
Q ss_pred CCeEEEEEcCCCCCCcccccceeeccccccEEEEEEcCCCCEEEEecCCCcEEEEeCCCc--cccce-eeeccceEEEEE
Q 047325 216 DGTVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSSSRSIVYCGSSDGLVNFWEREKQ--LSHGG-VLKGHKLAVLCL 292 (368)
Q Consensus 216 dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~--~~~~~-~~~~~~~~~~~~ 292 (368)
|+++.+|....... .... ......|..-|..+.|+|++.++++++.|..|++|..... +.... ....+...++++
T Consensus 593 DRt~sl~~~~~~~~-~e~~-fa~~k~HtRIIWdcsW~pde~~FaTaSRDK~VkVW~~~~~~d~~i~~~a~~~~~~aVTAv 670 (764)
T KOG1063|consen 593 DRTVSLYEVQEDIK-DEFR-FACLKAHTRIIWDCSWSPDEKYFATASRDKKVKVWEEPDLRDKYISRFACLKFSLAVTAV 670 (764)
T ss_pred CceEEeeeeecccc-hhhh-hccccccceEEEEcccCcccceeEEecCCceEEEEeccCchhhhhhhhchhccCCceeeE
Confidence 99999999854332 1111 2336789999999999999999999999999999998765 32222 334456666666
Q ss_pred Ee-------CCCEEEEeeCCCeEEEEecCC-------Cceee---eEeeeccccCeeEEEEecCCeeeecCCcceEEEEE
Q 047325 293 AA-------AGKLVFSGSADKTICVWRRDG-------AIHTC---LSVLTGHTGPVKCLAVEEDRDSSSSTSSCAQRWIV 355 (368)
Q Consensus 293 ~~-------~~~~l~~~~~dg~i~iw~~~~-------~~~~~---~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~w~l 355 (368)
+. .+..++.|-+.|.|.+|.... ..... .....+|...|+.+.|.|...-- ...+.....|
T Consensus 671 ~~~~~~~~e~~~~vavGle~GeI~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~aV~rl~w~p~~~~~--~~~~~~~l~l 748 (764)
T KOG1063|consen 671 AYLPVDHNEKGDVVAVGLEKGEIVLWRRKREHRQVTVGTFNLDTRLCATIGPDSAVNRLLWRPTCSDD--WVEDKEWLNL 748 (764)
T ss_pred EeeccccccccceEEEEecccEEEEEecccccccccceeeeeccccccccChHHhhheeEeccccccc--cccccceeEE
Confidence 54 144788999999999998641 11111 11223577789999999863110 0011122258
Q ss_pred eeCCcccccccC
Q 047325 356 YSGSLDKSDDDV 367 (368)
Q Consensus 356 ~sg~~D~~v~i~ 367 (368)
+.|++|.++|++
T Consensus 749 a~~g~D~~vri~ 760 (764)
T KOG1063|consen 749 AVGGDDESVRIF 760 (764)
T ss_pred eeecccceeEEe
Confidence 899999999986
No 142
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.93 E-value=1.6e-23 Score=159.78 Aligned_cols=269 Identities=18% Similarity=0.231 Sum_probs=193.9
Q ss_pred EEEEEec--CCEEEEccCCCcEEEEcCCc--ceecccCCCCCeeEEEEe--CCEEEEEeCCCeEEEEeecCCCccccccC
Q 047325 47 IYSLAAS--KDLLYTGSDSKNIRVWKNLK--EFCGFKASSGLVKAIVIS--GEKIFTGHQDGKIRVWKISPKNQSVHKRA 120 (368)
Q Consensus 47 i~~~~~~--~~~l~s~~~dg~i~iw~~~~--~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~vw~~~~~~~~~~~~~ 120 (368)
..|+.|+ |++||+|+.||.|.|||+.+ .-..+.+|..+|.+++|+ |+.|++++.|..|.+||+..+......+
T Consensus 26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs~l~rir- 104 (405)
T KOG1273|consen 26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFRIARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGSPLKRIR- 104 (405)
T ss_pred cceEEeccCcceeeeeccCCcEEEEEccccchhhhhhccccceeEEEecCCCCEeeeecCCceeEEEeccCCCceeEEE-
Confidence 5678887 77999999999999999874 345788999999999999 8999999999999999999887554443
Q ss_pred CccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcCC-CCEEEEEeCCCcEEEEEccCCeEEEEeecCC---
Q 047325 121 GTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQD-CGLLYTASWDRTFKVWRISDSKCLESVSAHD--- 196 (368)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~--- 196 (368)
...+|+.+.|+|. .+.+++.-.+..-.+-++..++....-....
T Consensus 105 --------------------------------f~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~~Lp~d~d~dl 152 (405)
T KOG1273|consen 105 --------------------------------FDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHSVLPKDDDGDL 152 (405)
T ss_pred --------------------------------ccCccceeeeccccCCeEEEEEecCCcEEEEecCCceeeccCCCcccc
Confidence 5688999999994 3344444444445555554422111111111
Q ss_pred -CceEEEEeCCCC-eEEEEcCCCeEEEEEcCCCCCCcccccceeeccc-cccEEEEEEcCCCCEEEEecCCCcEEEEeCC
Q 047325 197 -DAVNSVVSSSEG-LIFTGSADGTVKVWKREQHGKGTKHSLAQTLLKQ-ECAVTALVVSSSRSIVYCGSSDGLVNFWERE 273 (368)
Q Consensus 197 -~~v~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~-~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~ 273 (368)
....+..|.+.| ++++|...|.+.++|..+.. +...+.-. ...|..+.++..|+.|+..+.|..|+.|+++
T Consensus 153 n~sas~~~fdr~g~yIitGtsKGkllv~~a~t~e------~vas~rits~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~ 226 (405)
T KOG1273|consen 153 NSSASHGVFDRRGKYIITGTSKGKLLVYDAETLE------CVASFRITSVQAIKQIIVSRKGRFLIINTSDRVIRTYEIS 226 (405)
T ss_pred ccccccccccCCCCEEEEecCcceEEEEecchhe------eeeeeeechheeeeEEEEeccCcEEEEecCCceEEEEehh
Confidence 112233577888 99999999999999998652 33333323 3678999999999999999999999999976
Q ss_pred Ccccc------c--e----eeeccceEEEEEEeCCCEEEEeeC-CCeEEEEecCCCceeeeEeeeccc-cCeeEEEEecC
Q 047325 274 KQLSH------G--G----VLKGHKLAVLCLAAAGKLVFSGSA-DKTICVWRRDGAIHTCLSVLTGHT-GPVKCLAVEED 339 (368)
Q Consensus 274 ~~~~~------~--~----~~~~~~~~~~~~~~~~~~l~~~~~-dg~i~iw~~~~~~~~~~~~~~~h~-~~v~~l~~~~~ 339 (368)
.-... . . ....-.=...||+-+|.|+++|+. ...++||.-..+ .+++.+.|.. ....++.|+|-
T Consensus 227 di~~~~r~~e~e~~~K~qDvVNk~~Wk~ccfs~dgeYv~a~s~~aHaLYIWE~~~G--sLVKILhG~kgE~l~DV~whp~ 304 (405)
T KOG1273|consen 227 DIDDEGRDGEVEPEHKLQDVVNKLQWKKCCFSGDGEYVCAGSARAHALYIWEKSIG--SLVKILHGTKGEELLDVNWHPV 304 (405)
T ss_pred hhcccCccCCcChhHHHHHHHhhhhhhheeecCCccEEEeccccceeEEEEecCCc--ceeeeecCCchhheeecccccc
Confidence 21111 0 0 001111223778889999998874 456999965554 7888888877 56889999999
Q ss_pred CeeeecC-CcceEEEEEe
Q 047325 340 RDSSSST-SSCAQRWIVY 356 (368)
Q Consensus 340 ~~~~~~~-~~~~~~w~l~ 356 (368)
...+++- ++.+.+|..+
T Consensus 305 rp~i~si~sg~v~iw~~~ 322 (405)
T KOG1273|consen 305 RPIIASIASGVVYIWAVV 322 (405)
T ss_pred eeeeeeccCCceEEEEee
Confidence 9987765 4557777654
No 143
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.93 E-value=7.7e-24 Score=160.10 Aligned_cols=214 Identities=23% Similarity=0.312 Sum_probs=163.9
Q ss_pred cCCCCCeeEEEEe---CCEEEEEeCCCeEEEEeecCCCccccccCCccccceeeeeccCCCCceeEecccceeeeeecCC
Q 047325 79 KASSGLVKAIVIS---GEKIFTGHQDGKIRVWKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSD 155 (368)
Q Consensus 79 ~~~~~~v~~~~~~---~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (368)
..|.+.|+++..+ |+++++|+.||.|.+||+++.......... ...... .....-.+|.-
T Consensus 40 r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li--~k~~c~---------------v~~~h~~~Hky 102 (397)
T KOG4283|consen 40 RPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLI--AKHKCI---------------VAKQHENGHKY 102 (397)
T ss_pred ccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccce--eheeee---------------ccccCCcccee
Confidence 4588999999987 899999999999999999876421111000 000000 00111234888
Q ss_pred CEeEEEEcC-CCCEEEEEeCCCcEEEEEccCCeEEEEeecCCCceEEEEeCCCC----eEEEEcCCCeEEEEEcCCCCCC
Q 047325 156 AVSCMSLDQ-DCGLLYTASWDRTFKVWRISDSKCLESVSAHDDAVNSVVSSSEG----LIFTGSADGTVKVWKREQHGKG 230 (368)
Q Consensus 156 ~v~~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~----~l~~~~~dg~i~i~d~~~~~~~ 230 (368)
.|.++.|.| |...+.+++.|.++++||..+.+....|+ -++.|.+-+++|-. ++++|..|-.|++.|+..+
T Consensus 103 ~iss~~WyP~DtGmFtssSFDhtlKVWDtnTlQ~a~~F~-me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SG--- 178 (397)
T KOG4283|consen 103 AISSAIWYPIDTGMFTSSSFDHTLKVWDTNTLQEAVDFK-MEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASG--- 178 (397)
T ss_pred eeeeeEEeeecCceeecccccceEEEeecccceeeEEee-cCceeehhhcChhhhcceEEEEecCCCcEEEEeccCC---
Confidence 999999999 66789999999999999999998888887 45678888888754 7888999999999999887
Q ss_pred cccccceeeccccccEEEEEEcCCCC-EEEEecCCCcEEEEeCCCccccc--------------eeeeccceEE--EEEE
Q 047325 231 TKHSLAQTLLKQECAVTALVVSSSRS-IVYCGSSDGLVNFWEREKQLSHG--------------GVLKGHKLAV--LCLA 293 (368)
Q Consensus 231 ~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~--------------~~~~~~~~~~--~~~~ 293 (368)
.....+.+|...|.++.|+|... .|++|+.||.|++||++...-.. .....|.+.+ +++.
T Consensus 179 ---s~sH~LsGHr~~vlaV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~t 255 (397)
T KOG4283|consen 179 ---SFSHTLSGHRDGVLAVEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWT 255 (397)
T ss_pred ---cceeeeccccCceEEEEeccCceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeec
Confidence 46788999999999999999766 57889999999999987431111 1233566666 4555
Q ss_pred eCCCEEEEeeCCCeEEEEecCCC
Q 047325 294 AAGKLVFSGSADKTICVWRRDGA 316 (368)
Q Consensus 294 ~~~~~l~~~~~dg~i~iw~~~~~ 316 (368)
.++.++++++.|..+++|+...+
T Consensus 256 Sd~~~l~~~gtd~r~r~wn~~~G 278 (397)
T KOG4283|consen 256 SDARYLASCGTDDRIRVWNMESG 278 (397)
T ss_pred ccchhhhhccCccceEEeecccC
Confidence 58999999999999999998765
No 144
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.93 E-value=1.1e-23 Score=165.54 Aligned_cols=289 Identities=15% Similarity=0.159 Sum_probs=207.5
Q ss_pred eeeeccCcCCcEEEEEecCC--EEEEccCCCcEEEEcCCc--------ceecc-cCCCCCeeEEEEe--CCEEEEEeCCC
Q 047325 36 LIGSLVREEGHIYSLAASKD--LLYTGSDSKNIRVWKNLK--------EFCGF-KASSGLVKAIVIS--GEKIFTGHQDG 102 (368)
Q Consensus 36 ~~~~~~~h~~~i~~~~~~~~--~l~s~~~dg~i~iw~~~~--------~~~~~-~~~~~~v~~~~~~--~~~l~s~~~dg 102 (368)
..+-+.+|.+.|.++.|+.+ +|++|+.|..+++|++.+ ++... ..|...|.|++|+ +.++++|..++
T Consensus 48 ~qKD~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~~ 127 (609)
T KOG4227|consen 48 CQKDVREHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGERWG 127 (609)
T ss_pred hhhhhhhhccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEecCCCcc
Confidence 34568899999999999744 999999999999998653 22222 3467899999999 67899999999
Q ss_pred eEEEEeecCCCccccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcCCCCEEEEEeCCCcEEEEE
Q 047325 103 KIRVWKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCGLLYTASWDRTFKVWR 182 (368)
Q Consensus 103 ~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd 182 (368)
+|..-|+++.+.+...... ...+.|..+..+|..+.|++.+.++.|.+||
T Consensus 128 ~VI~HDiEt~qsi~V~~~~------------------------------~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D 177 (609)
T KOG4227|consen 128 TVIKHDIETKQSIYVANEN------------------------------NNRGDVYHMDQHPTDNTLIVVTRAKLVSFID 177 (609)
T ss_pred eeEeeecccceeeeeeccc------------------------------CcccceeecccCCCCceEEEEecCceEEEEe
Confidence 9999999988754333211 1345899999999999999999999999999
Q ss_pred ccCCe-EEEE--eecCCCceEEEEeCCCC--eEEEEcCCCeEEEEEcCCCCCCcc-cccceeeccccccEEEEEEcCCCC
Q 047325 183 ISDSK-CLES--VSAHDDAVNSVVSSSEG--LIFTGSADGTVKVWKREQHGKGTK-HSLAQTLLKQECAVTALVVSSSRS 256 (368)
Q Consensus 183 ~~~~~-~~~~--~~~~~~~v~~~~~~~~~--~l~~~~~dg~i~i~d~~~~~~~~~-~~~~~~~~~~~~~i~~~~~~~~~~ 256 (368)
.+..+ ++.. +.........+.|+|.. +|++.+..+.+.+||++....... ......+......-.+..|+|+|+
T Consensus 178 ~Rd~~~~~~~~~~AN~~~~F~t~~F~P~~P~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~ 257 (609)
T KOG4227|consen 178 NRDRQNPISLVLPANSGKNFYTAEFHPETPALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGN 257 (609)
T ss_pred ccCCCCCCceeeecCCCccceeeeecCCCceeEEeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCC
Confidence 98755 2222 22234556788999987 889999999999999997643100 000011111122346788999999
Q ss_pred EEEEecCCCcEEEEeCCCccccceeeeccc-------eEEEEEEe-CCCEEEEeeCCCeEEEEecCCCc-----------
Q 047325 257 IVYCGSSDGLVNFWEREKQLSHGGVLKGHK-------LAVLCLAA-AGKLVFSGSADKTICVWRRDGAI----------- 317 (368)
Q Consensus 257 ~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~-------~~~~~~~~-~~~~l~~~~~dg~i~iw~~~~~~----------- 317 (368)
.|++--....-.+||+-+..++.... .|. ..+.++.+ +..-+++|+.+-.|++|.+....
T Consensus 258 Q~msiRR~~~P~~~D~~S~R~~V~k~-D~N~~GY~N~~T~KS~~F~~D~~v~tGSD~~~i~~WklP~~~ds~G~~~IG~~ 336 (609)
T KOG4227|consen 258 QFMSIRRGKCPLYFDFISQRCFVLKS-DHNPNGYCNIKTIKSMTFIDDYTVATGSDHWGIHIWKLPRANDSYGFTQIGHD 336 (609)
T ss_pred eehhhhccCCCEEeeeecccceeEec-cCCCCcceeeeeeeeeeeecceeeeccCcccceEEEecCCCccccCccccCcc
Confidence 99888777777888988755553222 222 12222333 34459999999999999874210
Q ss_pred ----------eeeeEeeeccccCeeEEEEecCCeeeecCCcceEEEEEeeCCcccccccC
Q 047325 318 ----------HTCLSVLTGHTGPVKCLAVEEDRDSSSSTSSCAQRWIVYSGSLDKSDDDV 367 (368)
Q Consensus 318 ----------~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~w~l~sg~~D~~v~i~ 367 (368)
...+..+++|..-++.+.|+|... .|++.+..+.+|+|
T Consensus 337 ~~~~~~~~~i~~~~~VLrGHRSv~NQVRF~~H~~------------~l~SSGVE~~~KlW 384 (609)
T KOG4227|consen 337 EEEMPSEIFIEKELTVLRGHRSVPNQVRFSQHNN------------LLVSSGVENSFKLW 384 (609)
T ss_pred hhhCchhheecceeEEEecccccccceeecCCcc------------eEeccchhhheecc
Confidence 123456789999999999999988 56666667777766
No 145
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.93 E-value=2.5e-23 Score=173.88 Aligned_cols=234 Identities=17% Similarity=0.278 Sum_probs=181.4
Q ss_pred CCCCeeEEEEe--CCEEEEEeCCCeEEEEeecCCCccccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEe
Q 047325 81 SSGLVKAIVIS--GEKIFTGHQDGKIRVWKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVS 158 (368)
Q Consensus 81 ~~~~v~~~~~~--~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 158 (368)
....|.+++++ .+.||.+-.||.|.+|++...-...... ..+....|.
T Consensus 24 ~Ps~I~slA~s~kS~~lAvsRt~g~IEiwN~~~~w~~~~vi------------------------------~g~~drsIE 73 (691)
T KOG2048|consen 24 KPSEIVSLAYSHKSNQLAVSRTDGNIEIWNLSNNWFLEPVI------------------------------HGPEDRSIE 73 (691)
T ss_pred eccceEEEEEeccCCceeeeccCCcEEEEccCCCceeeEEE------------------------------ecCCCCcee
Confidence 45689999998 7789999999999999998753211111 112456899
Q ss_pred EEEEcCCCCEEEEEeCCCcEEEEEccCCeEEEEeecCCCceEEEEeCCCC-eEEEEcCCCeEEEEEcCCCCCCcccccce
Q 047325 159 CMSLDQDCGLLYTASWDRTFKVWRISDSKCLESVSAHDDAVNSVVSSSEG-LIFTGSADGTVKVWKREQHGKGTKHSLAQ 237 (368)
Q Consensus 159 ~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~ 237 (368)
+++|.+. ..|++.+.+|.|.-||+.+++++..+....+.|++++.+|.+ .++.|+.||.+..++.... ......
T Consensus 74 ~L~W~e~-~RLFS~g~sg~i~EwDl~~lk~~~~~d~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~----~I~~~r 148 (691)
T KOG2048|consen 74 SLAWAEG-GRLFSSGLSGSITEWDLHTLKQKYNIDSNGGAIWSIAINPENTILAIGCDDGVLYDFSIGPD----KITYKR 148 (691)
T ss_pred eEEEccC-CeEEeecCCceEEEEecccCceeEEecCCCcceeEEEeCCccceEEeecCCceEEEEecCCc----eEEEEe
Confidence 9999954 568888889999999999999999999999999999999999 9999999997777776543 223334
Q ss_pred eeccccccEEEEEEcCCCCEEEEecCCCcEEEEeCCCccccce----eee---ccceEEEEEEe-CCCEEEEeeCCCeEE
Q 047325 238 TLLKQECAVTALVVSSSRSIVYCGSSDGLVNFWEREKQLSHGG----VLK---GHKLAVLCLAA-AGKLVFSGSADKTIC 309 (368)
Q Consensus 238 ~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~----~~~---~~~~~~~~~~~-~~~~l~~~~~dg~i~ 309 (368)
.+...++.+.++.|+|++..+++|+.||.|++||..++..... ... ....-+.++.+ ....|++|...|+|.
T Consensus 149 ~l~rq~sRvLslsw~~~~~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd~tI~sgDS~G~V~ 228 (691)
T KOG2048|consen 149 SLMRQKSRVLSLSWNPTGTKIAGGSIDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRDSTIASGDSAGTVT 228 (691)
T ss_pred ecccccceEEEEEecCCccEEEecccCceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEeecCcEEEecCCceEE
Confidence 4556678999999999999999999999999999987655431 111 11222222222 577899999999999
Q ss_pred EEecCCCceeeeEeeeccccCeeEEEEecCCeeeecCCcceE
Q 047325 310 VWRRDGAIHTCLSVLTGHTGPVKCLAVEEDRDSSSSTSSCAQ 351 (368)
Q Consensus 310 iw~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~ 351 (368)
+||...+ ..++.+..|..-|.+|+..+++..+.+++-+.+
T Consensus 229 FWd~~~g--TLiqS~~~h~adVl~Lav~~~~d~vfsaGvd~~ 268 (691)
T KOG2048|consen 229 FWDSIFG--TLIQSHSCHDADVLALAVADNEDRVFSAGVDPK 268 (691)
T ss_pred EEcccCc--chhhhhhhhhcceeEEEEcCCCCeEEEccCCCc
Confidence 9987776 778888999999999999999885444443333
No 146
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.92 E-value=9.6e-24 Score=162.60 Aligned_cols=268 Identities=14% Similarity=0.255 Sum_probs=197.5
Q ss_pred CEEEEccCCCcEEEEcCCc--ceecccCCCCCeeEEEEe----CCEEEEEeCCCeEEEEeecCCCccccccCCcccccee
Q 047325 55 DLLYTGSDSKNIRVWKNLK--EFCGFKASSGLVKAIVIS----GEKIFTGHQDGKIRVWKISPKNQSVHKRAGTLPTLKD 128 (368)
Q Consensus 55 ~~l~s~~~dg~i~iw~~~~--~~~~~~~~~~~v~~~~~~----~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~ 128 (368)
..+|++...|.|++||..+ .+..++++...++.+.|. ++.+.+|+.||+|++||++...+...+....
T Consensus 41 ~~vav~lSngsv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~------ 114 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDKGTGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQ------ 114 (376)
T ss_pred eeEEEEecCCeEEEEeccchhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccC------
Confidence 4789999999999999876 577899999999999996 5689999999999999999887655444321
Q ss_pred eeeccCCCCceeEecccceeeeeecC-CCEeEEEEcCCCCEEEEEe----CCCcEEEEEccCCeE-EEEe-ecCCCceEE
Q 047325 129 IFKSSIKPSNYIEVRRHRTALWIRHS-DAVSCMSLDQDCGLLYTAS----WDRTFKVWRISDSKC-LESV-SAHDDAVNS 201 (368)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~~----~d~~i~iwd~~~~~~-~~~~-~~~~~~v~~ 201 (368)
+. .+..+++.+-+++.+++|. .+-.|.+||++..+. +..+ ..|...|++
T Consensus 115 ------------------------~~~~~f~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~ 170 (376)
T KOG1188|consen 115 ------------------------QSGTPFICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQ 170 (376)
T ss_pred ------------------------CCCCcceEeeccCcCCeEEeccccccCceEEEEEEeccccchhhhhhhhccCccee
Confidence 33 4567777776777777775 367899999998765 5444 469999999
Q ss_pred EEeCCCC--eEEEEcCCCeEEEEEcCCCCCCcccccceeeccccccEEEEEEcCCC-CEEEEecCCCcEEEEeCCCcccc
Q 047325 202 VVSSSEG--LIFTGSADGTVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSSSR-SIVYCGSSDGLVNFWEREKQLSH 278 (368)
Q Consensus 202 ~~~~~~~--~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~ 278 (368)
+.|+|.. +|++|+.||-|.+||+..... ...+.....+...|.++.|..++ +.|.+-+..+...+|+++.+...
T Consensus 171 lrFHP~~pnlLlSGSvDGLvnlfD~~~d~E---eDaL~~viN~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~~~ 247 (376)
T KOG1188|consen 171 LRFHPSDPNLLLSGSVDGLVNLFDTKKDNE---EDALLHVINHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGSEE 247 (376)
T ss_pred EEecCCCCCeEEeecccceEEeeecCCCcc---hhhHHHhhcccceeeeeeeecCCcceEEEEEccCceeEEEccCCChh
Confidence 9999988 999999999999999986522 22344556788889999999876 46888888999999999865433
Q ss_pred ceeeec------------cceEEEEEEe-CCCEEEEeeC-CCeEEEEecCC----CceeeeEeeec-cccCeeEEEEecC
Q 047325 279 GGVLKG------------HKLAVLCLAA-AGKLVFSGSA-DKTICVWRRDG----AIHTCLSVLTG-HTGPVKCLAVEED 339 (368)
Q Consensus 279 ~~~~~~------------~~~~~~~~~~-~~~~l~~~~~-dg~i~iw~~~~----~~~~~~~~~~~-h~~~v~~l~~~~~ 339 (368)
...... -..-|-+.+| +....+.++. -|...++-+.. .....+..+.+ |..-|+++.|...
T Consensus 248 ~~~~~~~~~~~d~r~~~~~dY~I~~~~~~~~~~~~l~g~~~n~~~~~~~~~~~s~~~~~~~a~l~g~~~eiVR~i~~~~~ 327 (376)
T KOG1188|consen 248 TWLENPDVSADDLRKEDNCDYVINEHSPGDKDTCALAGTDSNKGTIFPLVDTSSGSLLTEPAILQGGHEEIVRDILFDVK 327 (376)
T ss_pred hcccCccchhhhHHhhhhhhheeecccCCCcceEEEeccccCceeEEEeeecccccccCccccccCCcHHHHHHHhhhcc
Confidence 211111 1122334444 3445555544 56666665431 12234445555 7778999999887
Q ss_pred CeeeecCCcceEEEEEeeCCcccccccC
Q 047325 340 RDSSSSTSSCAQRWIVYSGSLDKSDDDV 367 (368)
Q Consensus 340 ~~~~~~~~~~~~~w~l~sg~~D~~v~i~ 367 (368)
+. .++|||+||.+.+|
T Consensus 328 ~~------------~l~TGGEDG~l~~W 343 (376)
T KOG1188|consen 328 ND------------VLYTGGEDGLLQAW 343 (376)
T ss_pred cc------------eeeccCCCceEEEE
Confidence 77 78999999999988
No 147
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.92 E-value=5.7e-23 Score=177.41 Aligned_cols=238 Identities=18% Similarity=0.204 Sum_probs=184.8
Q ss_pred cCCCCCeeEEEEe--CCEEEEEeCCCeEEEEeecCCCccccccCCccccceeeeeccCCCCceeEecccceeeeeecCCC
Q 047325 79 KASSGLVKAIVIS--GEKIFTGHQDGKIRVWKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDA 156 (368)
Q Consensus 79 ~~~~~~v~~~~~~--~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (368)
-.|....+.++|. |++|++++.||.|++|+............ .+...
T Consensus 10 yaht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P~ti~-------------------------------~~g~~ 58 (933)
T KOG1274|consen 10 YAHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEEEPETID-------------------------------ISGEL 58 (933)
T ss_pred hhccCceEEEEEcCCCCEEEEecCCCceEEeecCCcccCCchhh-------------------------------ccCce
Confidence 3678888889987 88999999999999999876631111110 05567
Q ss_pred EeEEEEcCCCCEEEEEeCCCcEEEEEccCCeEEEEeecCCCceEEEEeCCCC-eEEEEcCCCeEEEEEcCCCCCCccccc
Q 047325 157 VSCMSLDQDCGLLYTASWDRTFKVWRISDSKCLESVSAHDDAVNSVVSSSEG-LIFTGSADGTVKVWKREQHGKGTKHSL 235 (368)
Q Consensus 157 v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~ 235 (368)
|.+++.. ..+|++|+.+++|.+|...+++.-..+....-++++++++.+| +++.|+.|-.|++.+..... .
T Consensus 59 v~~ia~~--s~~f~~~s~~~tv~~y~fps~~~~~iL~Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s------~ 130 (933)
T KOG1274|consen 59 VSSIACY--SNHFLTGSEQNTVLRYKFPSGEEDTILARFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSS------Q 130 (933)
T ss_pred eEEEeec--ccceEEeeccceEEEeeCCCCCccceeeeeeccceEEEEecCCcEEEeecCceeEEEEeccccc------h
Confidence 7777764 4489999999999999999988776666677899999999999 99999999999999998764 4
Q ss_pred ceeeccccccEEEEEEcCCCCEEEEecCCCcEEEEeCCCccccceeee---------ccceEEEEEEeCCCEEEEeeCCC
Q 047325 236 AQTLLKQECAVTALVVSSSRSIVYCGSSDGLVNFWEREKQLSHGGVLK---------GHKLAVLCLAAAGKLVFSGSADK 306 (368)
Q Consensus 236 ~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~---------~~~~~~~~~~~~~~~l~~~~~dg 306 (368)
...+.+|.++|.++.|+|++++||+.+.||.|++||+.++........ .......+|+|++..++....|+
T Consensus 131 ~~~lrgh~apVl~l~~~p~~~fLAvss~dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~ 210 (933)
T KOG1274|consen 131 EKVLRGHDAPVLQLSYDPKGNFLAVSSCDGKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDN 210 (933)
T ss_pred heeecccCCceeeeeEcCCCCEEEEEecCceEEEEEcccchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCC
Confidence 678899999999999999999999999999999999997654322111 12233477889988888888999
Q ss_pred eEEEEecCCCceeeeEeeeccccCeeEEEEecCCeeeecCCcceEEEEEeeCCcccccccC
Q 047325 307 TICVWRRDGAIHTCLSVLTGHTGPVKCLAVEEDRDSSSSTSSCAQRWIVYSGSLDKSDDDV 367 (368)
Q Consensus 307 ~i~iw~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~w~l~sg~~D~~v~i~ 367 (368)
.|.+|+..+...........+...+..++|+|.|++ |++++.||.|-||
T Consensus 211 ~Vkvy~r~~we~~f~Lr~~~~ss~~~~~~wsPnG~Y------------iAAs~~~g~I~vW 259 (933)
T KOG1274|consen 211 TVKVYSRKGWELQFKLRDKLSSSKFSDLQWSPNGKY------------IAASTLDGQILVW 259 (933)
T ss_pred eEEEEccCCceeheeecccccccceEEEEEcCCCcE------------EeeeccCCcEEEE
Confidence 999998877633333333445566999999999995 5555555555555
No 148
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.92 E-value=4.4e-23 Score=157.95 Aligned_cols=263 Identities=16% Similarity=0.214 Sum_probs=196.5
Q ss_pred EEEecCC--EEEEccCCCcEEEEcCCcceec--------cc-------CCCCCeeEEEEe---------CCEEEEEeCCC
Q 047325 49 SLAASKD--LLYTGSDSKNIRVWKNLKEFCG--------FK-------ASSGLVKAIVIS---------GEKIFTGHQDG 102 (368)
Q Consensus 49 ~~~~~~~--~l~s~~~dg~i~iw~~~~~~~~--------~~-------~~~~~v~~~~~~---------~~~l~s~~~dg 102 (368)
...|+|+ -|++-+.|..+++|++...... +. .....|...+|- ..++++.+.|.
T Consensus 54 gckWSPDGSciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t~l~a~ssr~~ 133 (406)
T KOG2919|consen 54 GCKWSPDGSCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPSTNLFAVSSRDQ 133 (406)
T ss_pred cceeCCCCceEEeecccCeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCCCccceeeeccccC
Confidence 4455555 8889999999999987532111 11 123445665553 45889999999
Q ss_pred eEEEEeecCCCccccccCCccccceeeeeccCCCCceeEecccceeeeeecCCC---EeEEEEcCCCCEEEEEeCCCcEE
Q 047325 103 KIRVWKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDA---VSCMSLDQDCGLLYTASWDRTFK 179 (368)
Q Consensus 103 ~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---v~~~~~~~~~~~l~~~~~d~~i~ 179 (368)
-|++||.-+++.......-. |.++ ..+++|+|||.+|++|. ...|+
T Consensus 134 PIh~wdaftG~lraSy~~yd------------------------------h~de~taAhsL~Fs~DGeqlfaGy-krcir 182 (406)
T KOG2919|consen 134 PIHLWDAFTGKLRASYRAYD------------------------------HQDEYTAAHSLQFSPDGEQLFAGY-KRCIR 182 (406)
T ss_pred ceeeeeccccccccchhhhh------------------------------hHHhhhhheeEEecCCCCeEeecc-cceEE
Confidence 99999999988654433211 3333 35899999999999876 58999
Q ss_pred EEEc-cCCeEEE---Ee----ecCCCceEEEEeCCCC--eEEEEcCCCeEEEEEcCCCCCCcccccceeeccccccEEEE
Q 047325 180 VWRI-SDSKCLE---SV----SAHDDAVNSVVSSSEG--LIFTGSADGTVKVWKREQHGKGTKHSLAQTLLKQECAVTAL 249 (368)
Q Consensus 180 iwd~-~~~~~~~---~~----~~~~~~v~~~~~~~~~--~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~i~~~ 249 (368)
++|+ +.|+... ++ .+..+-+.|++++|.. .++.|+....+-||.-... .++..+.+|.+.|+.+
T Consensus 183 vFdt~RpGr~c~vy~t~~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~------~pl~llggh~gGvThL 256 (406)
T KOG2919|consen 183 VFDTSRPGRDCPVYTTVTKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGR------RPLQLLGGHGGGVTHL 256 (406)
T ss_pred EeeccCCCCCCcchhhhhcccccccceeeeeeccCCCCcceeeecccceeeeEecCCC------CceeeecccCCCeeeE
Confidence 9999 4443211 11 1235678899999977 8999999888888876544 3577788999999999
Q ss_pred EEcCCCCEEEEecC-CCcEEEEeCCCccccceeeeccce----EE-EEEEeCCCEEEEeeCCCeEEEEecCCCceeeeEe
Q 047325 250 VVSSSRSIVYCGSS-DGLVNFWEREKQLSHGGVLKGHKL----AV-LCLAAAGKLVFSGSADKTICVWRRDGAIHTCLSV 323 (368)
Q Consensus 250 ~~~~~~~~l~~~~~-dg~i~i~d~~~~~~~~~~~~~~~~----~~-~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~ 323 (368)
+|.++|+.|++|.. |..|..||++....+...+..|.. +| ..+.|++++|++|+.||.|++||++.. ...+..
T Consensus 257 ~~~edGn~lfsGaRk~dkIl~WDiR~~~~pv~~L~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~~-gn~~sv 335 (406)
T KOG2919|consen 257 QWCEDGNKLFSGARKDDKILCWDIRYSRDPVYALERHVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLKDL-GNEVSV 335 (406)
T ss_pred EeccCcCeecccccCCCeEEEEeehhccchhhhhhhhccCccceEEEecCCCCceeeccCCCccEEEEecCCC-CCcccc
Confidence 99999999999875 678999999977666556655544 23 566788999999999999999999773 244566
Q ss_pred eeccccCeeEEEEecCCeeeecCCcc
Q 047325 324 LTGHTGPVKCLAVEEDRDSSSSTSSC 349 (368)
Q Consensus 324 ~~~h~~~v~~l~~~~~~~~~~~~~~~ 349 (368)
+..|+.-++.++++|--.++|++++.
T Consensus 336 ~~~~sd~vNgvslnP~mpilatssGq 361 (406)
T KOG2919|consen 336 TGNYSDTVNGVSLNPIMPILATSSGQ 361 (406)
T ss_pred cccccccccceecCcccceeeeccCc
Confidence 77789999999999998877777654
No 149
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.92 E-value=4.3e-24 Score=158.89 Aligned_cols=285 Identities=16% Similarity=0.149 Sum_probs=197.9
Q ss_pred CceeeeccCcCCcEEEEEecCC-EEEEccCCCcEEEEcCCcc--eeccc-CCCCCeeEEEEe-CCEEEEEeCCCeEEEEe
Q 047325 34 NGLIGSLVREEGHIYSLAASKD-LLYTGSDSKNIRVWKNLKE--FCGFK-ASSGLVKAIVIS-GEKIFTGHQDGKIRVWK 108 (368)
Q Consensus 34 ~~~~~~~~~h~~~i~~~~~~~~-~l~s~~~dg~i~iw~~~~~--~~~~~-~~~~~v~~~~~~-~~~l~s~~~dg~i~vw~ 108 (368)
...+..+.+|.+.|+++.|..+ +|.+|..-|.|++|++.+. ...+. .+...|+.+..- ++.|.+-+.|+.+.+|+
T Consensus 4 PdP~fvLRp~~~~v~s~~fqa~~rL~sg~~~G~V~~w~lqt~r~~~~~r~~g~~~it~lq~~p~d~l~tqgRd~~L~lw~ 83 (323)
T KOG0322|consen 4 PDPFFVLRPHSSSVTSVLFQANERLMSGLSVGIVKMWVLQTERDLPLIRLFGRLFITNLQSIPNDSLDTQGRDPLLILWT 83 (323)
T ss_pred CCCeeEeccccchheehhhccchhhhcccccceEEEEEeecCccchhhhhhccceeeceeecCCcchhhcCCCceEEEEE
Confidence 3445567799999999999854 8999999999999998744 45566 677788888776 68999999999999999
Q ss_pred ecCCCccccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcCC-----C----CEEEEEeCCC-cE
Q 047325 109 ISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQD-----C----GLLYTASWDR-TF 178 (368)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-----~----~~l~~~~~d~-~i 178 (368)
+........ |.-.++++-|.+. + ..++.-+... .+
T Consensus 84 ia~s~~i~i-----------------------------------~Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~ 128 (323)
T KOG0322|consen 84 IAYSAFISI-----------------------------------HSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDET 128 (323)
T ss_pred ccCcceEEE-----------------------------------eeeeccccccccceeccCCCcchhheecCCcccchh
Confidence 986442211 2222333333321 1 1111111110 12
Q ss_pred EEEEccCCeEEEEee----cCCCceEEEEeCCC-C---eEEEEcCCCeEEEEEcCCCCCC----cccccceeeccccccE
Q 047325 179 KVWRISDSKCLESVS----AHDDAVNSVVSSSE-G---LIFTGSADGTVKVWKREQHGKG----TKHSLAQTLLKQECAV 246 (368)
Q Consensus 179 ~iwd~~~~~~~~~~~----~~~~~v~~~~~~~~-~---~l~~~~~dg~i~i~d~~~~~~~----~~~~~~~~~~~~~~~i 246 (368)
++-|......+.... +..+.+.|..+.-+ + .+++|.++|.+.+||+..+... ...+.......|..++
T Consensus 129 h~~D~g~~tqv~i~dd~~~~Klgsvmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpv 208 (323)
T KOG0322|consen 129 HKQDGGDTTQVQIADDSERSKLGSVMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPV 208 (323)
T ss_pred hhhccCccceeEccCchhccccCceeeeeccccccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcc
Confidence 333332222222221 23456777764332 2 7888999999999999876331 1122344556788999
Q ss_pred EEEEEcCCCCEEEEecCCCcEEEEeCCCc--cccc---eeeeccceEEEEEEeCCCEEEEeeCCCeEEEEecCCCceeee
Q 047325 247 TALVVSSSRSIVYCGSSDGLVNFWEREKQ--LSHG---GVLKGHKLAVLCLAAAGKLVFSGSADKTICVWRRDGAIHTCL 321 (368)
Q Consensus 247 ~~~~~~~~~~~l~~~~~dg~i~i~d~~~~--~~~~---~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~ 321 (368)
.++.+.+..+.=++|+.+..+..|.+... .... ...+.....-..+.||++.+++++.|++||||..++. .++
T Consensus 209 lsldyas~~~rGisgga~dkl~~~Sl~~s~gslq~~~e~~lknpGv~gvrIRpD~KIlATAGWD~RiRVyswrtl--~pL 286 (323)
T KOG0322|consen 209 LSLDYASSCDRGISGGADDKLVMYSLNHSTGSLQIRKEITLKNPGVSGVRIRPDGKILATAGWDHRIRVYSWRTL--NPL 286 (323)
T ss_pred eeeeechhhcCCcCCCccccceeeeeccccCcccccceEEecCCCccceEEccCCcEEeecccCCcEEEEEeccC--Cch
Confidence 99999987777788888889999988743 1111 1222223334778899999999999999999988876 788
Q ss_pred EeeeccccCeeEEEEecCCeeeecCCcceEEEEEeeCCcccccccC
Q 047325 322 SVLTGHTGPVKCLAVEEDRDSSSSTSSCAQRWIVYSGSLDKSDDDV 367 (368)
Q Consensus 322 ~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~w~l~sg~~D~~v~i~ 367 (368)
..++-|...|++++|+|+.. +++.+|.|+.|.+|
T Consensus 287 AVLkyHsagvn~vAfspd~~------------lmAaaskD~rISLW 320 (323)
T KOG0322|consen 287 AVLKYHSAGVNAVAFSPDCE------------LMAAASKDARISLW 320 (323)
T ss_pred hhhhhhhcceeEEEeCCCCc------------hhhhccCCceEEee
Confidence 88999999999999999988 67888888888877
No 150
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.92 E-value=1.5e-21 Score=162.38 Aligned_cols=268 Identities=12% Similarity=0.120 Sum_probs=178.0
Q ss_pred CCCceeeeccCcCCcEEEEEecCC--EE-EEccCCCcEEEEcCCcc--eecccCCCCCeeEEEEe--CCEEEEE-eCCCe
Q 047325 32 PQNGLIGSLVREEGHIYSLAASKD--LL-YTGSDSKNIRVWKNLKE--FCGFKASSGLVKAIVIS--GEKIFTG-HQDGK 103 (368)
Q Consensus 32 ~~~~~~~~~~~h~~~i~~~~~~~~--~l-~s~~~dg~i~iw~~~~~--~~~~~~~~~~v~~~~~~--~~~l~s~-~~dg~ 103 (368)
..++.+..+..|.. +.+++++++ .+ ++++.++.|++||.... ...+..+.. +..++++ ++.++++ +.|+.
T Consensus 19 ~t~~~~~~~~~~~~-~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~-~~~~~~~~~g~~l~~~~~~~~~ 96 (300)
T TIGR03866 19 ATLEVTRTFPVGQR-PRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTLPSGPD-PELFALHPNGKILYIANEDDNL 96 (300)
T ss_pred CCCceEEEEECCCC-CCceEECCCCCEEEEEECCCCeEEEEECCCCcEEEeccCCCC-ccEEEECCCCCEEEEEcCCCCe
Confidence 34556666665544 567888755 44 67788999999998753 233333333 4566676 6666554 56899
Q ss_pred EEEEeecCCCccccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcCCCCEEEEEeCCC-cEEEEE
Q 047325 104 IRVWKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCGLLYTASWDR-TFKVWR 182 (368)
Q Consensus 104 i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~-~i~iwd 182 (368)
|++||+.+.+...... +...+.+++|+|++++++++..++ .+.+||
T Consensus 97 l~~~d~~~~~~~~~~~---------------------------------~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~d 143 (300)
T TIGR03866 97 VTVIDIETRKVLAEIP---------------------------------VGVEPEGMAVSPDGKIVVNTSETTNMAHFID 143 (300)
T ss_pred EEEEECCCCeEEeEee---------------------------------CCCCcceEEECCCCCEEEEEecCCCeEEEEe
Confidence 9999998754322111 223457899999999999988765 467789
Q ss_pred ccCCeEEEEeecCCCceEEEEeCCCC-eEE-EEcCCCeEEEEEcCCCCCCcccccce-eeccccccEEEEEEcCCCCEEE
Q 047325 183 ISDSKCLESVSAHDDAVNSVVSSSEG-LIF-TGSADGTVKVWKREQHGKGTKHSLAQ-TLLKQECAVTALVVSSSRSIVY 259 (368)
Q Consensus 183 ~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~-~~~~dg~i~i~d~~~~~~~~~~~~~~-~~~~~~~~i~~~~~~~~~~~l~ 259 (368)
..+++....+.. .....++.|++++ .++ ++..++.|++||++............ ...........++|+|++++++
T Consensus 144 ~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~ 222 (300)
T TIGR03866 144 TKTYEIVDNVLV-DQRPRFAEFTADGKELWVSSEIGGTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAF 222 (300)
T ss_pred CCCCeEEEEEEc-CCCccEEEECCCCCEEEEEcCCCCEEEEEEcCcceeeeeeeecccccccccCCccceEECCCCCEEE
Confidence 988877665543 3345788999999 554 44569999999998653211000000 0000111235688999999865
Q ss_pred E-ecCCCcEEEEeCCCccccceeeeccceEEEEEEeCCCEEEEe-eCCCeEEEEecCCCceeeeEeeeccccCeeEEEEe
Q 047325 260 C-GSSDGLVNFWEREKQLSHGGVLKGHKLAVLCLAAAGKLVFSG-SADKTICVWRRDGAIHTCLSVLTGHTGPVKCLAVE 337 (368)
Q Consensus 260 ~-~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~l~~~ 337 (368)
+ ...++.+.+||.++.+.......++....++++|++++|+++ +.+|.|++||+++. +.+.++... ...+.++++
T Consensus 223 ~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~i~v~d~~~~--~~~~~~~~~-~~~~~~~~~ 299 (300)
T TIGR03866 223 VALGPANRVAVVDAKTYEVLDYLLVGQRVWQLAFTPDEKYLLTTNGVSNDVSVIDVAAL--KVIKSIKVG-RLPWGVVVR 299 (300)
T ss_pred EEcCCCCeEEEEECCCCcEEEEEEeCCCcceEEECCCCCEEEEEcCCCCeEEEEECCCC--cEEEEEEcc-cccceeEeC
Confidence 5 455678999999876654333344555557788899999886 46899999999876 666677643 556888887
Q ss_pred c
Q 047325 338 E 338 (368)
Q Consensus 338 ~ 338 (368)
|
T Consensus 300 ~ 300 (300)
T TIGR03866 300 P 300 (300)
T ss_pred C
Confidence 5
No 151
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.92 E-value=1e-23 Score=164.46 Aligned_cols=208 Identities=18% Similarity=0.284 Sum_probs=164.3
Q ss_pred CCCceeeeccCcCCcEEEEEecCC---EEEEccCCCcEEEEcCCcc-----eecccCCCCCeeEEEEe---CCEEEEEeC
Q 047325 32 PQNGLIGSLVREEGHIYSLAASKD---LLYTGSDSKNIRVWKNLKE-----FCGFKASSGLVKAIVIS---GEKIFTGHQ 100 (368)
Q Consensus 32 ~~~~~~~~~~~h~~~i~~~~~~~~---~l~s~~~dg~i~iw~~~~~-----~~~~~~~~~~v~~~~~~---~~~l~s~~~ 100 (368)
.....+.++.+|.+.=+.|+|++- .|+||..-+.|++|...+. ...+.+|+..|..|+|+ ...|++|+.
T Consensus 199 s~~~Pl~t~~ghk~EGy~LdWSp~~~g~LlsGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~ 278 (440)
T KOG0302|consen 199 SEFRPLFTFNGHKGEGYGLDWSPIKTGRLLSGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSC 278 (440)
T ss_pred cccCceEEecccCccceeeecccccccccccCccccceEeeeeccCceeecCccccccccchhhhccCCccCceEEeeec
Confidence 556778899999999999999974 7889999999999987643 34577899999999997 679999999
Q ss_pred CCeEEEEeecCCCccccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcCCCCEEEEEeCCCcEEE
Q 047325 101 DGKIRVWKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCGLLYTASWDRTFKV 180 (368)
Q Consensus 101 dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i 180 (368)
||+|+|||++.+....... ...|...|+.|.|+....+|++|+.||+++|
T Consensus 279 DgsIrIWDiRs~~~~~~~~------------------------------~kAh~sDVNVISWnr~~~lLasG~DdGt~~i 328 (440)
T KOG0302|consen 279 DGSIRIWDIRSGPKKAAVS------------------------------TKAHNSDVNVISWNRREPLLASGGDDGTLSI 328 (440)
T ss_pred CceEEEEEecCCCccceeE------------------------------eeccCCceeeEEccCCcceeeecCCCceEEE
Confidence 9999999999875322211 1239999999999998889999999999999
Q ss_pred EEccC---CeEEEEeecCCCceEEEEeCCCC--eEEEEcCCCeEEEEEcCCCCC----------Ccccccceeeccc--c
Q 047325 181 WRISD---SKCLESVSAHDDAVNSVVSSSEG--LIFTGSADGTVKVWKREQHGK----------GTKHSLAQTLLKQ--E 243 (368)
Q Consensus 181 wd~~~---~~~~~~~~~~~~~v~~~~~~~~~--~l~~~~~dg~i~i~d~~~~~~----------~~~~~~~~~~~~~--~ 243 (368)
||+++ ++++..++.|..+|+++.|+|.. .+++++.|..|.+||+..... .....+.+.+.-| +
T Consensus 329 wDLR~~~~~~pVA~fk~Hk~pItsieW~p~e~s~iaasg~D~QitiWDlsvE~D~ee~~~~a~~~L~dlPpQLLFVHqGQ 408 (440)
T KOG0302|consen 329 WDLRQFKSGQPVATFKYHKAPITSIEWHPHEDSVIAASGEDNQITIWDLSVEADEEEIDQEAAEGLQDLPPQLLFVHQGQ 408 (440)
T ss_pred EEhhhccCCCcceeEEeccCCeeEEEeccccCceEEeccCCCcEEEEEeeccCChhhhccccccchhcCCceeEEEecch
Confidence 99985 57889999999999999999976 899999999999999864322 0000111222223 4
Q ss_pred ccEEEEEEcCCC-CEEEEecCCCcEEEE
Q 047325 244 CAVTALVVSSSR-SIVYCGSSDGLVNFW 270 (368)
Q Consensus 244 ~~i~~~~~~~~~-~~l~~~~~dg~i~i~ 270 (368)
..+..+.|+++- -+|++.+.|| +.||
T Consensus 409 ke~KevhWH~QiPG~lvsTa~dG-fnVf 435 (440)
T KOG0302|consen 409 KEVKEVHWHRQIPGLLVSTAIDG-FNVF 435 (440)
T ss_pred hHhhhheeccCCCCeEEEecccc-eeEE
Confidence 567788898854 3777778888 4444
No 152
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.92 E-value=3.8e-23 Score=158.52 Aligned_cols=279 Identities=18% Similarity=0.212 Sum_probs=195.9
Q ss_pred ccCcCCcEEEEEec-------CCEEEEccCCCcEEEEcCCcc--eecc-----cCCCCCeeEEEEe------CCEEEEEe
Q 047325 40 LVREEGHIYSLAAS-------KDLLYTGSDSKNIRVWKNLKE--FCGF-----KASSGLVKAIVIS------GEKIFTGH 99 (368)
Q Consensus 40 ~~~h~~~i~~~~~~-------~~~l~s~~~dg~i~iw~~~~~--~~~~-----~~~~~~v~~~~~~------~~~l~s~~ 99 (368)
...|..+|..++|+ +..++|.+.+ .+.+|+.... ++.+ ..|......++|. +-+++.|+
T Consensus 34 ~ed~~~~I~gv~fN~~~~~~e~~vfatvG~~-rvtiy~c~~d~~ir~lq~y~D~d~~Esfytcsw~yd~~~~~p~la~~G 112 (385)
T KOG1034|consen 34 KEDHNKPIFGVAFNSFLGCDEPQVFATVGGN-RVTIYECPGDGGIRLLQSYADEDHDESFYTCSWSYDSNTGNPFLAAGG 112 (385)
T ss_pred hccCCCccceeeeehhcCCCCCceEEEeCCc-EEEEEEECCccceeeeeeccCCCCCcceEEEEEEecCCCCCeeEEeec
Confidence 45788999999996 3377777764 6778876532 2222 2366677777776 33789999
Q ss_pred CCCeEEEEeecCCCccccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcCCC-CEEEEEeCCCcE
Q 047325 100 QDGKIRVWKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDC-GLLYTASWDRTF 178 (368)
Q Consensus 100 ~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i 178 (368)
.-|.|+|.|+.+++... .+.+|...|+.+.++|+. +++++++.|..|
T Consensus 113 ~~GvIrVid~~~~~~~~--------------------------------~~~ghG~sINeik~~p~~~qlvls~SkD~sv 160 (385)
T KOG1034|consen 113 YLGVIRVIDVVSGQCSK--------------------------------NYRGHGGSINEIKFHPDRPQLVLSASKDHSV 160 (385)
T ss_pred ceeEEEEEecchhhhcc--------------------------------ceeccCccchhhhcCCCCCcEEEEecCCceE
Confidence 99999999998876433 344599999999999964 689999999999
Q ss_pred EEEEccCCeEEEEee---cCCCceEEEEeCCCC-eEEEEcCCCeEEEEEcCCCCCC-------------cc---------
Q 047325 179 KVWRISDSKCLESVS---AHDDAVNSVVSSSEG-LIFTGSADGTVKVWKREQHGKG-------------TK--------- 232 (368)
Q Consensus 179 ~iwd~~~~~~~~~~~---~~~~~v~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~-------------~~--------- 232 (368)
++|++++..++..+. +|...|.++.|++++ ++++++.|.+|++|++....-. ..
T Consensus 161 RlwnI~~~~Cv~VfGG~egHrdeVLSvD~~~~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~ 240 (385)
T KOG1034|consen 161 RLWNIQTDVCVAVFGGVEGHRDEVLSVDFSLDGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTH 240 (385)
T ss_pred EEEeccCCeEEEEecccccccCcEEEEEEcCCCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccc
Confidence 999999999998875 589999999999999 9999999999999999732110 00
Q ss_pred cccceeeccccccEEEEEEcCCCCEEEEecCCCcEEEEeCCC-ccccc------------eeeeccc--eEEEEEEe--C
Q 047325 233 HSLAQTLLKQECAVTALVVSSSRSIVYCGSSDGLVNFWEREK-QLSHG------------GVLKGHK--LAVLCLAA--A 295 (368)
Q Consensus 233 ~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~-~~~~~------------~~~~~~~--~~~~~~~~--~ 295 (368)
.+.......|...|.|+.|- |+++++=+-++.|..|...+ .+... ..+.-.. ..-+.+++ -
T Consensus 241 fp~fst~diHrnyVDCvrw~--gd~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~ 318 (385)
T KOG1034|consen 241 FPDFSTTDIHRNYVDCVRWF--GDFILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPW 318 (385)
T ss_pred cccccccccccchHHHHHHH--hhheeecccCceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecHH
Confidence 00001223455666666664 57899988899999998721 11100 0111111 12233444 4
Q ss_pred CCEEEEeeCCCeEEEEecCCCceeeeEeeec--cccCeeEEEEecCCeeeecCCcceEEE
Q 047325 296 GKLVFSGSADKTICVWRRDGAIHTCLSVLTG--HTGPVKCLAVEEDRDSSSSTSSCAQRW 353 (368)
Q Consensus 296 ~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~--h~~~v~~l~~~~~~~~~~~~~~~~~~w 353 (368)
++.|+.|...|.|++||++........++.. ....|...+|+.|+.+++....+..+|
T Consensus 319 ~~~la~gnq~g~v~vwdL~~~ep~~~ttl~~s~~~~tVRQ~sfS~dgs~lv~vcdd~~Vw 378 (385)
T KOG1034|consen 319 QKMLALGNQSGKVYVWDLDNNEPPKCTTLTHSKSGSTVRQTSFSRDGSILVLVCDDGTVW 378 (385)
T ss_pred HHHHhhccCCCcEEEEECCCCCCccCceEEeccccceeeeeeecccCcEEEEEeCCCcEE
Confidence 8899999999999999998764433333322 234699999999999654444444333
No 153
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.91 E-value=1.2e-23 Score=185.87 Aligned_cols=237 Identities=14% Similarity=0.257 Sum_probs=188.3
Q ss_pred CcEEEEEec--CC----EEEEccCCCcEEEEcCCcc--------eecccCCCCCeeEEEEe---CCEEEEEeCCCeEEEE
Q 047325 45 GHIYSLAAS--KD----LLYTGSDSKNIRVWKNLKE--------FCGFKASSGLVKAIVIS---GEKIFTGHQDGKIRVW 107 (368)
Q Consensus 45 ~~i~~~~~~--~~----~l~s~~~dg~i~iw~~~~~--------~~~~~~~~~~v~~~~~~---~~~l~s~~~dg~i~vw 107 (368)
.+-+.|+|. ++ +||.|..||.|.+||.... +..+..|.+.|..+.|+ ++.|++|+.||.|.||
T Consensus 65 ~rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iW 144 (1049)
T KOG0307|consen 65 NRFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILIW 144 (1049)
T ss_pred ccceeeeecccCCCccceeeccccCCceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCceeeccCCCCcEEEe
Confidence 446678874 22 6999999999999997642 44678899999999998 7799999999999999
Q ss_pred eecCCCccccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcCC-CCEEEEEeCCCcEEEEEccCC
Q 047325 108 KISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQD-CGLLYTASWDRTFKVWRISDS 186 (368)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~d~~i~iwd~~~~ 186 (368)
|+.+.+........ ...+.|.+++|+.. ...|++++.+|.+.|||++..
T Consensus 145 Dlnn~~tP~~~~~~------------------------------~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~ 194 (1049)
T KOG0307|consen 145 DLNKPETPFTPGSQ------------------------------APPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKK 194 (1049)
T ss_pred ccCCcCCCCCCCCC------------------------------CCcccceEeccchhhhHHhhccCCCCCceeccccCC
Confidence 99986543332110 04578999999874 457888899999999999999
Q ss_pred eEEEEeecCCC--ceEEEEeCCCC--eEEEEcCCC---eEEEEEcCCCCCCcccccceeeccccccEEEEEEcCCC-CEE
Q 047325 187 KCLESVSAHDD--AVNSVVSSSEG--LIFTGSADG---TVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSSSR-SIV 258 (368)
Q Consensus 187 ~~~~~~~~~~~--~v~~~~~~~~~--~l~~~~~dg---~i~i~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~l 258 (368)
+++..+..+.. .+..++|+|++ .+++++.|. .|.+||+|.... +.+.+..|+..|.++.|++.+ .+|
T Consensus 195 ~pii~ls~~~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~ass-----P~k~~~~H~~GilslsWc~~D~~ll 269 (1049)
T KOG0307|consen 195 KPIIKLSDTPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFASS-----PLKILEGHQRGILSLSWCPQDPRLL 269 (1049)
T ss_pred CcccccccCCCccceeeeeeCCCCceeeeeecCCCCCceeEeecccccCC-----chhhhcccccceeeeccCCCCchhh
Confidence 88888876654 47789999998 777776654 699999996543 677778999999999999965 899
Q ss_pred EEecCCCcEEEEeCCCccccceeeeccceEEEEEEe---CCCEEEEeeCCCeEEEEecCCCc
Q 047325 259 YCGSSDGLVNFWEREKQLSHGGVLKGHKLAVLCLAA---AGKLVFSGSADKTICVWRRDGAI 317 (368)
Q Consensus 259 ~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~---~~~~l~~~~~dg~i~iw~~~~~~ 317 (368)
++++.|++|.+|+.++++.+. .+......+..+++ +...+++++-||.|.||.+.+..
T Consensus 270 lSsgkD~~ii~wN~~tgEvl~-~~p~~~nW~fdv~w~pr~P~~~A~asfdgkI~I~sl~~~~ 330 (1049)
T KOG0307|consen 270 LSSGKDNRIICWNPNTGEVLG-ELPAQGNWCFDVQWCPRNPSVMAAASFDGKISIYSLQGTD 330 (1049)
T ss_pred hcccCCCCeeEecCCCceEee-ecCCCCcceeeeeecCCCcchhhhheeccceeeeeeecCC
Confidence 999999999999999987763 44445555655555 35589999999999999986543
No 154
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.91 E-value=1.5e-22 Score=159.51 Aligned_cols=286 Identities=16% Similarity=0.250 Sum_probs=191.5
Q ss_pred CCcEEEEEecCC---EEEEccCCCcEEEEcCCcc-----------eecccCCCCCeeEEEEe--CCEEEEEeCCCeEEEE
Q 047325 44 EGHIYSLAASKD---LLYTGSDSKNIRVWKNLKE-----------FCGFKASSGLVKAIVIS--GEKIFTGHQDGKIRVW 107 (368)
Q Consensus 44 ~~~i~~~~~~~~---~l~s~~~dg~i~iw~~~~~-----------~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~vw 107 (368)
..+|.++.|.++ .|+||+.|..|++|.+... ...+..|...|+++.|+ |+.|++|+.+|.|.+|
T Consensus 13 ~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~lW 92 (434)
T KOG1009|consen 13 HEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGELLASGGDGGEVFLW 92 (434)
T ss_pred CCceEEEEeccCcccceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcCeeeecCCCceEEEE
Confidence 456888888644 8999999999999976421 23567899999999999 7799999999999999
Q ss_pred eecCCCccccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcCCCCEEEEEeCCCcEEEEEccCCe
Q 047325 108 KISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCGLLYTASWDRTFKVWRISDSK 187 (368)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~ 187 (368)
....-.... .... ...... .-.....+.+|.+.|..++|+|++.++++++.|+.+++||+..|+
T Consensus 93 k~~~~~~~~-~d~e----------~~~~ke-----~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~~G~ 156 (434)
T KOG1009|consen 93 KQGDVRIFD-ADTE----------ADLNKE-----KWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVHAGQ 156 (434)
T ss_pred EecCcCCcc-ccch----------hhhCcc-----ceEEEEEecccccchhhhhccCCCceeeeeeccceEEEEEeccce
Confidence 877522110 0000 000000 011234556699999999999999999999999999999999999
Q ss_pred EEEEeecCCCceEEEEeCCCC-eEEEEcCCCeEEEEEcCCCCCCcccc---------------cceee--ccccccEEEE
Q 047325 188 CLESVSAHDDAVNSVVSSSEG-LIFTGSADGTVKVWKREQHGKGTKHS---------------LAQTL--LKQECAVTAL 249 (368)
Q Consensus 188 ~~~~~~~~~~~v~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~---------------~~~~~--~~~~~~i~~~ 249 (368)
....+..|...+..++|.|-+ ++++-+.|...+.+.+.......... ..+.+ .....-...+
T Consensus 157 l~~~~~dh~~yvqgvawDpl~qyv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~s~rLfhDeTlksFFrRl 236 (434)
T KOG1009|consen 157 LLAILDDHEHYVQGVAWDPLNQYVASKSSDRHPEGFSAKLKQVIKRHGLDIMPAKAFNEREGKSTRLFHDETLKSFFRRL 236 (434)
T ss_pred eEeeccccccccceeecchhhhhhhhhccCcccceeeeeeeeeeeeeeeeEeeecccCCCCcceeeeeecCchhhhhhhc
Confidence 999999999999999999988 88888888877766654332111100 00000 0112345678
Q ss_pred EEcCCCCEEEEecC----CC-----cEEEEeCCCccccceeeeccceEEEEEE---------e-----------CCCEEE
Q 047325 250 VVSSSRSIVYCGSS----DG-----LVNFWEREKQLSHGGVLKGHKLAVLCLA---------A-----------AGKLVF 300 (368)
Q Consensus 250 ~~~~~~~~l~~~~~----dg-----~i~i~d~~~~~~~~~~~~~~~~~~~~~~---------~-----------~~~~l~ 300 (368)
+|+|+|.+|++... .+ ..++|+-..-..+...+.......+.+. | .+-.++
T Consensus 237 sfTPdG~llvtPag~~~~g~~~~~n~tYvfsrk~l~rP~~~lp~~~k~~lavr~~pVy~elrp~~~~~~~~~lpyrlvfa 316 (434)
T KOG1009|consen 237 SFTPDGSLLVTPAGLFKVGGGVFRNTSYVFSRKDLKRPAARLPSPKKPALAVRFSPVYYELRPLSSEKFLFVLPYRLVFA 316 (434)
T ss_pred ccCCCCcEEEcccceeeeCCceeeceeEeeccccccCceeecCCCCcceEEEEeeeeEEEeccccccccccccccceEEE
Confidence 89999999988542 22 2355554433333222222222222111 1 123345
Q ss_pred EeeCCCeEEEEecCCCceeeeEee-eccccCeeEEEEecCCeeeecCCc
Q 047325 301 SGSADKTICVWRRDGAIHTCLSVL-TGHTGPVKCLAVEEDRDSSSSTSS 348 (368)
Q Consensus 301 ~~~~dg~i~iw~~~~~~~~~~~~~-~~h~~~v~~l~~~~~~~~~~~~~~ 348 (368)
.++ .+.|++||.+.. .++... .-|-.+|++++|++||..++.++-
T Consensus 317 iAt-~~svyvydtq~~--~P~~~v~nihy~~iTDiaws~dg~~l~vSS~ 362 (434)
T KOG1009|consen 317 IAT-KNSVYVYDTQTL--EPLAVVDNIHYSAITDIAWSDDGSVLLVSST 362 (434)
T ss_pred Eee-cceEEEeccccc--cceEEEeeeeeeeecceeecCCCcEEEEecc
Confidence 555 457999987664 444433 458899999999999996554443
No 155
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.91 E-value=2.1e-22 Score=153.78 Aligned_cols=244 Identities=13% Similarity=0.155 Sum_probs=169.8
Q ss_pred eeEEEEe--CCEEEEEeCCCeEEEEeecCCCccccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEE
Q 047325 85 VKAIVIS--GEKIFTGHQDGKIRVWKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSL 162 (368)
Q Consensus 85 v~~~~~~--~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 162 (368)
..|+.|+ |.+|++|+.||.|.|||+.+..... .+.+|..+|++++|
T Consensus 26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~iar--------------------------------~lsaH~~pi~sl~W 73 (405)
T KOG1273|consen 26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFRIAR--------------------------------MLSAHVRPITSLCW 73 (405)
T ss_pred cceEEeccCcceeeeeccCCcEEEEEccccchhh--------------------------------hhhccccceeEEEe
Confidence 6788898 9999999999999999999876322 23349999999999
Q ss_pred cCCCCEEEEEeCCCcEEEEEccCCeEEEEeecCCCceEEEEeCCCC--eEEEEcCCCeEEEEEcCCCCCCcccccceeec
Q 047325 163 DQDCGLLYTASWDRTFKVWRISDSKCLESVSAHDDAVNSVVSSSEG--LIFTGSADGTVKVWKREQHGKGTKHSLAQTLL 240 (368)
Q Consensus 163 ~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~--~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~ 240 (368)
+++|+.|++++.|..|.+||+..|.+++.+. ...+|....|+|.. ..++.-.+..-.+-++..+.. ..+..-.
T Consensus 74 S~dgr~LltsS~D~si~lwDl~~gs~l~rir-f~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h----~~Lp~d~ 148 (405)
T KOG1273|consen 74 SRDGRKLLTSSRDWSIKLWDLLKGSPLKRIR-FDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKH----SVLPKDD 148 (405)
T ss_pred cCCCCEeeeecCCceeEEEeccCCCceeEEE-ccCccceeeeccccCCeEEEEEecCCcEEEEecCCce----eeccCCC
Confidence 9999999999999999999999999999887 57889999999976 555544455555555543211 1111110
Q ss_pred --cccccEEEEEEcCCCCEEEEecCCCcEEEEeCCCccccceeeecc--ceEEEEEEeCCCEEEEeeCCCeEEEEecCCC
Q 047325 241 --KQECAVTALVVSSSRSIVYCGSSDGLVNFWEREKQLSHGGVLKGH--KLAVLCLAAAGKLVFSGSADKTICVWRRDGA 316 (368)
Q Consensus 241 --~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~ 316 (368)
.......+..|.+.|+++++|...|.+.++|..+.+......... ...-.-++..|+.|+.-+.|..||.|++..-
T Consensus 149 d~dln~sas~~~fdr~g~yIitGtsKGkllv~~a~t~e~vas~rits~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~di 228 (405)
T KOG1273|consen 149 DGDLNSSASHGVFDRRGKYIITGTSKGKLLVYDAETLECVASFRITSVQAIKQIIVSRKGRFLIINTSDRVIRTYEISDI 228 (405)
T ss_pred ccccccccccccccCCCCEEEEecCcceEEEEecchheeeeeeeechheeeeEEEEeccCcEEEEecCCceEEEEehhhh
Confidence 111122334688999999999999999999999865543222211 2223556678999999999999999987521
Q ss_pred -------ceeeeEeeec--cccCeeEEEEecCCeeeecCCcc---eEEEEEeeCCcccccccCC
Q 047325 317 -------IHTCLSVLTG--HTGPVKCLAVEEDRDSSSSTSSC---AQRWIVYSGSLDKSDDDVH 368 (368)
Q Consensus 317 -------~~~~~~~~~~--h~~~v~~l~~~~~~~~~~~~~~~---~~~w~l~sg~~D~~v~i~h 368 (368)
..++.+.+.. ...+-.+++|+.+|.++..++.. ..+|.=-+| .-|||.|
T Consensus 229 ~~~~r~~e~e~~~K~qDvVNk~~Wk~ccfs~dgeYv~a~s~~aHaLYIWE~~~G---sLVKILh 289 (405)
T KOG1273|consen 229 DDEGRDGEVEPEHKLQDVVNKLQWKKCCFSGDGEYVCAGSARAHALYIWEKSIG---SLVKILH 289 (405)
T ss_pred cccCccCCcChhHHHHHHHhhhhhhheeecCCccEEEeccccceeEEEEecCCc---ceeeeec
Confidence 1111111111 12345688999999998877643 444443333 3455544
No 156
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.91 E-value=5.3e-23 Score=157.27 Aligned_cols=209 Identities=15% Similarity=0.173 Sum_probs=154.9
Q ss_pred ceeeeeecCCCEeEEEEcCCCCEEEEEeCCCcEEEEEccCCeEEE----EeecCCCceEEEEeCCCC--eEEEEcCCCeE
Q 047325 146 RTALWIRHSDAVSCMSLDQDCGLLYTASWDRTFKVWRISDSKCLE----SVSAHDDAVNSVVSSSEG--LIFTGSADGTV 219 (368)
Q Consensus 146 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~----~~~~~~~~v~~~~~~~~~--~l~~~~~dg~i 219 (368)
....+.+|.+.|++++|+.||++|++++.|+.|++||++...... ...-..+..+.+.|.||- .++..-...++
T Consensus 78 ~~~~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~FapDc~s~vv~~~~g~~l 157 (420)
T KOG2096|consen 78 NVSVLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYDHPTRVVFAPDCKSVVVSVKRGNKL 157 (420)
T ss_pred hhhhhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhccccCCCceEEEECCCcceEEEEEccCCEE
Confidence 345678899999999999999999999999999999997643210 011112356788999998 66677777899
Q ss_pred EEEEcCCCCCCcccccc------eeeccccccEEEEEEcCCCCEEEEecCCCcEEEEeCCCccccceeee-ccceEEEEE
Q 047325 220 KVWKREQHGKGTKHSLA------QTLLKQECAVTALVVSSSRSIVYCGSSDGLVNFWEREKQLSHGGVLK-GHKLAVLCL 292 (368)
Q Consensus 220 ~i~d~~~~~~~~~~~~~------~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~-~~~~~~~~~ 292 (368)
++|.+.....+...... .....|+..+..+-...++.+|++++.|..|.+|+++ ++.+..... .....-.++
T Consensus 158 ~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lk-Gq~L~~idtnq~~n~~aav 236 (420)
T KOG2096|consen 158 CVYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLK-GQLLQSIDTNQSSNYDAAV 236 (420)
T ss_pred EEEEeeecccCCCCcccccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecC-Cceeeeeccccccccceee
Confidence 99987543322111111 1123456667777777888999999999999999999 444433222 223344788
Q ss_pred EeCCCEEEEeeCCCeEEEEecC---CC---ceeeeEeeeccccCeeEEEEecCCeeeecCCcceEEEEEeeCCccccccc
Q 047325 293 AAAGKLVFSGSADKTICVWRRD---GA---IHTCLSVLTGHTGPVKCLAVEEDRDSSSSTSSCAQRWIVYSGSLDKSDDD 366 (368)
Q Consensus 293 ~~~~~~l~~~~~dg~i~iw~~~---~~---~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~w~l~sg~~D~~v~i 366 (368)
+|+|++|++++-.--|++|.+- .+ .-..+..+++|...|..++|+++.. .++|.|.||++|+
T Consensus 237 SP~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~------------r~vtvSkDG~wri 304 (420)
T KOG2096|consen 237 SPDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSST------------RAVTVSKDGKWRI 304 (420)
T ss_pred CCCCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcc------------eeEEEecCCcEEE
Confidence 9999999999999899999862 11 1234667899999999999999999 7889999999998
Q ss_pred C
Q 047325 367 V 367 (368)
Q Consensus 367 ~ 367 (368)
|
T Consensus 305 w 305 (420)
T KOG2096|consen 305 W 305 (420)
T ss_pred e
Confidence 8
No 157
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.91 E-value=1.2e-22 Score=162.54 Aligned_cols=229 Identities=12% Similarity=0.225 Sum_probs=178.4
Q ss_pred CCCeeEEEEe--CCEEEEEeCCCeEEEEeecCCCccccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeE
Q 047325 82 SGLVKAIVIS--GEKIFTGHQDGKIRVWKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSC 159 (368)
Q Consensus 82 ~~~v~~~~~~--~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 159 (368)
.+.|+++.|. ...|++++.||++++|.++.......... .-...+|.+
T Consensus 213 ~~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~~lqS~------------------------------~l~~fPi~~ 262 (514)
T KOG2055|consen 213 HGGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNPKLQSI------------------------------HLEKFPIQK 262 (514)
T ss_pred cCCceEEEecCCCceEEEecCCCcEEEEEecCccChhheee------------------------------eeccCccce
Confidence 4679999998 56899999999999999987653322111 114578999
Q ss_pred EEEcCCCC-EEEEEeCCCcEEEEEccCCeEEE--EeecCC-CceEEEEeCCCC-eEEEEcCCCeEEEEEcCCCCCCcccc
Q 047325 160 MSLDQDCG-LLYTASWDRTFKVWRISDSKCLE--SVSAHD-DAVNSVVSSSEG-LIFTGSADGTVKVWKREQHGKGTKHS 234 (368)
Q Consensus 160 ~~~~~~~~-~l~~~~~d~~i~iwd~~~~~~~~--~~~~~~-~~v~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~ 234 (368)
..|.|+|. .+++++....++.||+.+.+... ...++. ..+.....++++ +|+..+..|.|.+....+..
T Consensus 263 a~f~p~G~~~i~~s~rrky~ysyDle~ak~~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~e------ 336 (514)
T KOG2055|consen 263 AEFAPNGHSVIFTSGRRKYLYSYDLETAKVTKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKE------ 336 (514)
T ss_pred eeecCCCceEEEecccceEEEEeeccccccccccCCCCcccchhheeEecCCCCeEEEcccCceEEeehhhhhh------
Confidence 99999998 89999999999999998876543 233333 356777889998 99999999999999876542
Q ss_pred cceeeccccccEEEEEEcCCCCEEEEecCCCcEEEEeCCCccccceeeecc--ceEEEEEEeCCCEEEEeeCCCeEEEEe
Q 047325 235 LAQTLLKQECAVTALVVSSSRSIVYCGSSDGLVNFWEREKQLSHGGVLKGH--KLAVLCLAAAGKLVFSGSADKTICVWR 312 (368)
Q Consensus 235 ~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~dg~i~iw~ 312 (368)
...-....+.+..++|+.+++.|++.+.+|.|++||++...........- ....+|.++++.+||+|+..|.|.|||
T Consensus 337 -li~s~KieG~v~~~~fsSdsk~l~~~~~~GeV~v~nl~~~~~~~rf~D~G~v~gts~~~S~ng~ylA~GS~~GiVNIYd 415 (514)
T KOG2055|consen 337 -LITSFKIEGVVSDFTFSSDSKELLASGGTGEVYVWNLRQNSCLHRFVDDGSVHGTSLCISLNGSYLATGSDSGIVNIYD 415 (514)
T ss_pred -hhheeeeccEEeeEEEecCCcEEEEEcCCceEEEEecCCcceEEEEeecCccceeeeeecCCCceEEeccCcceEEEec
Confidence 22223456789999999999999999999999999999876554333322 234467778999999999999999999
Q ss_pred cCC----CceeeeEeeeccccCeeEEEEecCCeeeecCC
Q 047325 313 RDG----AIHTCLSVLTGHTGPVKCLAVEEDRDSSSSTS 347 (368)
Q Consensus 313 ~~~----~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~ 347 (368)
.++ ...+++..+..-...|++|.|++|++++|-++
T Consensus 416 ~~s~~~s~~PkPik~~dNLtt~Itsl~Fn~d~qiLAiaS 454 (514)
T KOG2055|consen 416 GNSCFASTNPKPIKTVDNLTTAITSLQFNHDAQILAIAS 454 (514)
T ss_pred cchhhccCCCCchhhhhhhheeeeeeeeCcchhhhhhhh
Confidence 643 34577777777788999999999999877444
No 158
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.91 E-value=1.2e-22 Score=164.20 Aligned_cols=204 Identities=15% Similarity=0.196 Sum_probs=171.1
Q ss_pred CEEEEccCCCcEEEEcCCcce--ecccCCCCCeeEEEEe--CCEEEEEeCCCeEEEEeecCCCccccccCCccccceeee
Q 047325 55 DLLYTGSDSKNIRVWKNLKEF--CGFKASSGLVKAIVIS--GEKIFTGHQDGKIRVWKISPKNQSVHKRAGTLPTLKDIF 130 (368)
Q Consensus 55 ~~l~s~~~dg~i~iw~~~~~~--~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~ 130 (368)
-++++|+..+.|+|||+...+ ..++.|...|+++.++ +.||++++..|.|.|..+.++.....+...
T Consensus 92 ~y~~sgG~~~~Vkiwdl~~kl~hr~lkdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~~tt~f~~~--------- 162 (673)
T KOG4378|consen 92 LYEISGGQSGCVKIWDLRAKLIHRFLKDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQKTTTFTID--------- 162 (673)
T ss_pred eeeeccCcCceeeehhhHHHHHhhhccCCcceeEEEEecCCcceeEEeccCCcEEEEecccCccccceecC---------
Confidence 489999999999999998543 4578999999999998 789999999999999999888654433321
Q ss_pred eccCCCCceeEecccceeeeeecCCCEeEEEEcCCCC-EEEEEeCCCcEEEEEccCCeEEEEe-ecCCCceEEEEeCCCC
Q 047325 131 KSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCG-LLYTASWDRTFKVWRISDSKCLESV-SAHDDAVNSVVSSSEG 208 (368)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~i~iwd~~~~~~~~~~-~~~~~~v~~~~~~~~~ 208 (368)
....|.-+.|+|..+ +|.+++.+|.|.+||+....++..+ +.|..+...++|+|.+
T Consensus 163 ----------------------sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfspsn 220 (673)
T KOG4378|consen 163 ----------------------SGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMSPIFHASEAHSAPCRGICFSPSN 220 (673)
T ss_pred ----------------------CCCeEEEeecccccceeeEeeccCCeEEEEeccCCCcccchhhhccCCcCcceecCCc
Confidence 345667899999655 6778899999999999887777655 5699999999999988
Q ss_pred --eEEEEcCCCeEEEEEcCCCCCCcccccceeeccccccEEEEEEcCCCCEEEEecCCCcEEEEeCCCccccceeeeccc
Q 047325 209 --LIFTGSADGTVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSSSRSIVYCGSSDGLVNFWEREKQLSHGGVLKGHK 286 (368)
Q Consensus 209 --~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~ 286 (368)
+|++.+.|..|.+||.+... .........+...++|.++|.+|++|...|.|..||++..+.+......|.
T Consensus 221 e~l~vsVG~Dkki~~yD~~s~~-------s~~~l~y~~Plstvaf~~~G~~L~aG~s~G~~i~YD~R~~k~Pv~v~sah~ 293 (673)
T KOG4378|consen 221 EALLVSVGYDKKINIYDIRSQA-------STDRLTYSHPLSTVAFSECGTYLCAGNSKGELIAYDMRSTKAPVAVRSAHD 293 (673)
T ss_pred cceEEEecccceEEEeeccccc-------ccceeeecCCcceeeecCCceEEEeecCCceEEEEecccCCCCceEeeecc
Confidence 89999999999999998542 222334566789999999999999999999999999999888889999999
Q ss_pred eEEEEEEeCC
Q 047325 287 LAVLCLAAAG 296 (368)
Q Consensus 287 ~~~~~~~~~~ 296 (368)
..|.++++..
T Consensus 294 ~sVt~vafq~ 303 (673)
T KOG4378|consen 294 ASVTRVAFQP 303 (673)
T ss_pred cceeEEEeee
Confidence 9998888753
No 159
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.90 E-value=1.8e-22 Score=166.64 Aligned_cols=238 Identities=18% Similarity=0.262 Sum_probs=181.7
Q ss_pred cccCCCCCeeEEEEe--CCEEEEEeCCCeEEEEeecCCCccccccCCccccceeeeeccCCCCceeEecccceeeeeecC
Q 047325 77 GFKASSGLVKAIVIS--GEKIFTGHQDGKIRVWKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHS 154 (368)
Q Consensus 77 ~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (368)
.+.+|.+.|.+|..+ |..|++|+.||+|+||.+.++.++.... ..
T Consensus 395 vyrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~~---------------------------------~d 441 (733)
T KOG0650|consen 395 VYRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQ---------------------------------FD 441 (733)
T ss_pred eEeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEEe---------------------------------ec
Confidence 478999999999987 9999999999999999999998766554 44
Q ss_pred CCEeEEEEcCCCC--EEEEEeCCCcEEEEEccCCe-------------------------------------EEEEeecC
Q 047325 155 DAVSCMSLDQDCG--LLYTASWDRTFKVWRISDSK-------------------------------------CLESVSAH 195 (368)
Q Consensus 155 ~~v~~~~~~~~~~--~l~~~~~d~~i~iwd~~~~~-------------------------------------~~~~~~~~ 195 (368)
+.|.|++|+|.+. .||++-. ..+.|.+..-|. -+...-.|
T Consensus 442 ~~I~~vaw~P~~~~~vLAvA~~-~~~~ivnp~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~ 520 (733)
T KOG0650|consen 442 SEIRSVAWNPLSDLCVLAVAVG-ECVLIVNPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKH 520 (733)
T ss_pred ceeEEEEecCCCCceeEEEEec-CceEEeCccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEec
Confidence 6789999998654 3444433 335555432210 01122246
Q ss_pred CCceEEEEeCCCC-eEEEEcC---CCeEEEEEcCCCCCCcccccceeeccccccEEEEEEcCCCCEEEEecCCCcEEEEe
Q 047325 196 DDAVNSVVSSSEG-LIFTGSA---DGTVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSSSRSIVYCGSSDGLVNFWE 271 (368)
Q Consensus 196 ~~~v~~~~~~~~~-~l~~~~~---dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d 271 (368)
...|+.+.|+..| +|++... ...|.|+++.... ....+....+.+.++.|+|...+|++++. ..|++||
T Consensus 521 ~k~i~~vtWHrkGDYlatV~~~~~~~~VliHQLSK~~------sQ~PF~kskG~vq~v~FHPs~p~lfVaTq-~~vRiYd 593 (733)
T KOG0650|consen 521 PKSIRQVTWHRKGDYLATVMPDSGNKSVLIHQLSKRK------SQSPFRKSKGLVQRVKFHPSKPYLFVATQ-RSVRIYD 593 (733)
T ss_pred CCccceeeeecCCceEEEeccCCCcceEEEEeccccc------ccCchhhcCCceeEEEecCCCceEEEEec-cceEEEe
Confidence 7789999999999 8887765 3578999987542 23344556678999999999999988875 6799999
Q ss_pred CCCccccceeeecc-ceEEEEEEeCCCEEEEeeCCCeEEEEecCCCceeeeEeeeccccCeeEEEEecCCeeeecCCcce
Q 047325 272 REKQLSHGGVLKGH-KLAVLCLAAAGKLVFSGSADKTICVWRRDGAIHTCLSVLTGHTGPVKCLAVEEDRDSSSSTSSCA 350 (368)
Q Consensus 272 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~ 350 (368)
+..+........+. ....+++++.|.-|+.|+.|+.+..||++... ++.+++.-|...+++++|++.-.
T Consensus 594 L~kqelvKkL~tg~kwiS~msihp~GDnli~gs~d~k~~WfDldlss-kPyk~lr~H~~avr~Va~H~ryP--------- 663 (733)
T KOG0650|consen 594 LSKQELVKKLLTGSKWISSMSIHPNGDNLILGSYDKKMCWFDLDLSS-KPYKTLRLHEKAVRSVAFHKRYP--------- 663 (733)
T ss_pred hhHHHHHHHHhcCCeeeeeeeecCCCCeEEEecCCCeeEEEEcccCc-chhHHhhhhhhhhhhhhhccccc---------
Confidence 98765554433332 23336777889999999999999999998653 56778888999999999999998
Q ss_pred EEEEEeeCCcccccccCC
Q 047325 351 QRWIVYSGSLDKSDDDVH 368 (368)
Q Consensus 351 ~~w~l~sg~~D~~v~i~h 368 (368)
++++|+.||++.|||
T Consensus 664 ---Lfas~sdDgtv~Vfh 678 (733)
T KOG0650|consen 664 ---LFASGSDDGTVIVFH 678 (733)
T ss_pred ---eeeeecCCCcEEEEe
Confidence 899999999999998
No 160
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.90 E-value=3e-21 Score=145.76 Aligned_cols=264 Identities=19% Similarity=0.223 Sum_probs=191.0
Q ss_pred CCcEEEEcCCcc-----eecccCCCCCeeEEEEe---CCEEEEEeCC-------CeEEEEeecCCCccccccCCccccce
Q 047325 63 SKNIRVWKNLKE-----FCGFKASSGLVKAIVIS---GEKIFTGHQD-------GKIRVWKISPKNQSVHKRAGTLPTLK 127 (368)
Q Consensus 63 dg~i~iw~~~~~-----~~~~~~~~~~v~~~~~~---~~~l~s~~~d-------g~i~vw~~~~~~~~~~~~~~~~~~~~ 127 (368)
|+.|.+.++..+ ...|..|.+.|..++-+ ...|+++..+ -.+.||.+...........- ..
T Consensus 39 dNqVhll~~d~e~s~l~skvf~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tl--E~-- 114 (370)
T KOG1007|consen 39 DNQVHLLRLDSEGSELLSKVFFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTL--EC-- 114 (370)
T ss_pred cceeEEEEecCccchhhhhhhhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccccchh--hH--
Confidence 567777665532 23567788889888876 4566666542 23779988755432110000 00
Q ss_pred eeeeccCCCCceeEecccceeee-eecCCCEeEEEEcCCCCEEEEEeCCCcEEEEEccCCeE-EEEee-----cCCCceE
Q 047325 128 DIFKSSIKPSNYIEVRRHRTALW-IRHSDAVSCMSLDQDCGLLYTASWDRTFKVWRISDSKC-LESVS-----AHDDAVN 200 (368)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~-~~~~~-----~~~~~v~ 200 (368)
+..+ ..+-+.|.|+.|.|++..+++-. |..|.+|++..+.. ...+. .+....+
T Consensus 115 -------------------v~~Ldteavg~i~cvew~Pns~klasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ft 174 (370)
T KOG1007|consen 115 -------------------VASLDTEAVGKINCVEWEPNSDKLASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFT 174 (370)
T ss_pred -------------------hhcCCHHHhCceeeEEEcCCCCeeEEec-cCceEEEEcccCcchheeecccccccccceec
Confidence 0000 01556899999999999998876 78999999987765 33332 2445677
Q ss_pred EEEeCC--CCeEEEEcCCCeEEEEEcCCCCCCcccccceeeccccccEEEEEEcCCCC-EEEEecCCCcEEEEeCCCccc
Q 047325 201 SVVSSS--EGLIFTGSADGTVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSSSRS-IVYCGSSDGLVNFWEREKQLS 277 (368)
Q Consensus 201 ~~~~~~--~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~ 277 (368)
+-+|+| ++..+....|+++..||+|+..+ .......|...+..+.|+|+.+ +|++++.||.|++||.+..+.
T Consensus 175 sg~WspHHdgnqv~tt~d~tl~~~D~RT~~~-----~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~ 249 (370)
T KOG1007|consen 175 SGAWSPHHDGNQVATTSDSTLQFWDLRTMKK-----NNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKF 249 (370)
T ss_pred ccccCCCCccceEEEeCCCcEEEEEccchhh-----hcchhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCc
Confidence 788998 34556667799999999996533 2333456778899999999765 788999999999999999888
Q ss_pred cceeeeccceEEEEEEeC---CCEEEEeeCCCeEEEEecCCC---------------------------ceeeeEeeecc
Q 047325 278 HGGVLKGHKLAVLCLAAA---GKLVFSGSADKTICVWRRDGA---------------------------IHTCLSVLTGH 327 (368)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~---~~~l~~~~~dg~i~iw~~~~~---------------------------~~~~~~~~~~h 327 (368)
+...+.+|.-.+.++.++ .++|++|+.|..|.+|....- ..-.+.++..|
T Consensus 250 pv~el~~HsHWvW~VRfn~~hdqLiLs~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydeh 329 (370)
T KOG1007|consen 250 PVQELPGHSHWVWAVRFNPEHDQLILSGGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEH 329 (370)
T ss_pred cccccCCCceEEEEEEecCccceEEEecCCCceeEEEeccccccccccccccccccCcchhhHHhccccccccccccccc
Confidence 889999999999887764 679999999999999964210 01234567789
Q ss_pred ccCeeEEEEecCCeeeecCCcceEEEEEeeCCccccccc
Q 047325 328 TGPVKCLAVEEDRDSSSSTSSCAQRWIVYSGSLDKSDDD 366 (368)
Q Consensus 328 ~~~v~~l~~~~~~~~~~~~~~~~~~w~l~sg~~D~~v~i 366 (368)
...|.+++|+.-.. |.+++-|.||.+.|
T Consensus 330 EDSVY~~aWSsadP-----------WiFASLSYDGRviI 357 (370)
T KOG1007|consen 330 EDSVYALAWSSADP-----------WIFASLSYDGRVII 357 (370)
T ss_pred ccceEEEeeccCCC-----------eeEEEeccCceEEe
Confidence 99999999998888 78999999998754
No 161
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.90 E-value=1.1e-20 Score=139.32 Aligned_cols=274 Identities=17% Similarity=0.226 Sum_probs=182.5
Q ss_pred EEecCCEEEEccCCCcEEEEcCCc------------ceecccCCCCCeeEEEEeCCEEEEEeCCCeEEEEeecCCCcccc
Q 047325 50 LAASKDLLYTGSDSKNIRVWKNLK------------EFCGFKASSGLVKAIVISGEKIFTGHQDGKIRVWKISPKNQSVH 117 (368)
Q Consensus 50 ~~~~~~~l~s~~~dg~i~iw~~~~------------~~~~~~~~~~~v~~~~~~~~~l~s~~~dg~i~vw~~~~~~~~~~ 117 (368)
++..+.+|+.|..+|+|.+..+.. .+...++|.++|+.++|..++|++|+ ||.|+-|..+...+...
T Consensus 18 ~sp~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~d~~Lls~g-dG~V~gw~W~E~~es~~ 96 (325)
T KOG0649|consen 18 ISPSKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFHDDFLLSGG-DGLVYGWEWNEEEESLA 96 (325)
T ss_pred hCCcceEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeeehhheeecc-CceEEEeeehhhhhhcc
Confidence 344456999999999999997531 23456899999999999999999888 59999998876543111
Q ss_pred cc-CCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcCCCCEEEEEeCCCcEEEEEccCCeEEEEeecCC
Q 047325 118 KR-AGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCGLLYTASWDRTFKVWRISDSKCLESVSAHD 196 (368)
Q Consensus 118 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~ 196 (368)
.+ .-..... ..+-.-.--.|+++...|..+-++.++.|+.++-||+++|+...++++|.
T Consensus 97 ~K~lwe~~~P--------------------~~~~~~evPeINam~ldP~enSi~~AgGD~~~y~~dlE~G~i~r~~rGHt 156 (325)
T KOG0649|consen 97 TKRLWEVKIP--------------------MQVDAVEVPEINAMWLDPSENSILFAGGDGVIYQVDLEDGRIQREYRGHT 156 (325)
T ss_pred chhhhhhcCc--------------------cccCcccCCccceeEeccCCCcEEEecCCeEEEEEEecCCEEEEEEcCCc
Confidence 11 0000000 00000022468899999987777777789999999999999999999999
Q ss_pred CceEEEEe-CCCCeEEEEcCCCeEEEEEcCCCCCCcccccc---eeeccc-cccEEEEEEcCCCCEEEEecCCCcEEEEe
Q 047325 197 DAVNSVVS-SSEGLIFTGSADGTVKVWKREQHGKGTKHSLA---QTLLKQ-ECAVTALVVSSSRSIVYCGSSDGLVNFWE 271 (368)
Q Consensus 197 ~~v~~~~~-~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~---~~~~~~-~~~i~~~~~~~~~~~l~~~~~dg~i~i~d 271 (368)
..|.++.- +..+.+++|++||++++||.++.+......+. ..+..+ ...|-+++. +..++++|+. ..+.+|.
T Consensus 157 DYvH~vv~R~~~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~--~edWlvCGgG-p~lslwh 233 (325)
T KOG0649|consen 157 DYVHSVVGRNANGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAV--NEDWLVCGGG-PKLSLWH 233 (325)
T ss_pred ceeeeeeecccCcceeecCCCccEEEEeccccceeEEeccccChhhcCcccCceeEEEec--cCceEEecCC-CceeEEe
Confidence 99999987 45559999999999999999987432111110 111111 234555555 5668888764 5699999
Q ss_pred CCCccccceeeeccceEEEEEEeCCCEEEEeeCCCeEEEEecCCCceeeeEeeeccccCeeEEEEecCC-eeeecCCcce
Q 047325 272 REKQLSHGGVLKGHKLAVLCLAAAGKLVFSGSADKTICVWRRDGAIHTCLSVLTGHTGPVKCLAVEEDR-DSSSSTSSCA 350 (368)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~l~~~~~~-~~~~~~~~~~ 350 (368)
++..+... ...-+.++..+.++.+.+++++..+.|.-|.+... ........+...++..|+..- +++..+..+.
T Consensus 234 Lrsse~t~--vfpipa~v~~v~F~~d~vl~~G~g~~v~~~~l~Gv---l~a~ip~~s~~c~s~s~~~~p~k~~s~ag~s~ 308 (325)
T KOG0649|consen 234 LRSSESTC--VFPIPARVHLVDFVDDCVLIGGEGNHVQSYTLNGV---LQANIPVESTACYSASWQTSPIKFISIAGFSN 308 (325)
T ss_pred ccCCCceE--EEecccceeEeeeecceEEEeccccceeeeeeccE---EEEeccCCccceeeecccCCceEEEEecccce
Confidence 99866542 22334556677788889999998889999977542 222233333344555554333 2333333344
Q ss_pred EE
Q 047325 351 QR 352 (368)
Q Consensus 351 ~~ 352 (368)
++
T Consensus 309 ~~ 310 (325)
T KOG0649|consen 309 KL 310 (325)
T ss_pred ee
Confidence 44
No 162
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.90 E-value=5.1e-22 Score=167.42 Aligned_cols=238 Identities=16% Similarity=0.190 Sum_probs=186.4
Q ss_pred CcCCcEEEEEecCC--EEEEccCCCcEEEEcCCc--ceecccCCCCCeeEEEEe-----CCEEEEEeCCCeEEEEeecCC
Q 047325 42 REEGHIYSLAASKD--LLYTGSDSKNIRVWKNLK--EFCGFKASSGLVKAIVIS-----GEKIFTGHQDGKIRVWKISPK 112 (368)
Q Consensus 42 ~h~~~i~~~~~~~~--~l~s~~~dg~i~iw~~~~--~~~~~~~~~~~v~~~~~~-----~~~l~s~~~dg~i~vw~~~~~ 112 (368)
+-...+.+++.+++ .||+|..-|+++||++.. ..+....|...|.|+.++ ...|++++.|..|.|+|+..+
T Consensus 457 d~r~G~R~~~vSp~gqhLAsGDr~GnlrVy~Lq~l~~~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rn 536 (1080)
T KOG1408|consen 457 DSRFGFRALAVSPDGQHLASGDRGGNLRVYDLQELEYTCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRN 536 (1080)
T ss_pred CcccceEEEEECCCcceecccCccCceEEEEehhhhhhhheecccceeEEEeecCchhhhHhhhhccCCceEEEEecccc
Confidence 34556888888766 999999999999999874 456678999999999998 458999999999999998755
Q ss_pred CccccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcCCC--CEEEEEeCCCcEEEEEccCCeEEE
Q 047325 113 NQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDC--GLLYTASWDRTFKVWRISDSKCLE 190 (368)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~--~~l~~~~~d~~i~iwd~~~~~~~~ 190 (368)
-... ..+.+|...|+++.|--+| ..+++++.|..|.+--.+....-.
T Consensus 537 y~l~-------------------------------qtld~HSssITsvKFa~~gln~~MiscGADksimFr~~qk~~~g~ 585 (1080)
T KOG1408|consen 537 YDLV-------------------------------QTLDGHSSSITSVKFACNGLNRKMISCGADKSIMFRVNQKASSGR 585 (1080)
T ss_pred cchh-------------------------------hhhcccccceeEEEEeecCCceEEEeccCchhhheehhccccCce
Confidence 3222 2334599999999998766 688999999876553332111111
Q ss_pred Eeec-----CCCceEEEEeCCCC-eEEEEcCCCeEEEEEcCCCCCCcccccceeeccccccEEEEEEcCCCCEEEEecCC
Q 047325 191 SVSA-----HDDAVNSVVSSSEG-LIFTGSADGTVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSSSRSIVYCGSSD 264 (368)
Q Consensus 191 ~~~~-----~~~~v~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d 264 (368)
.+.. ....+..++..|.. ++++++.|..|+|||+..++. .+..+.-..|++....+...|.|.||++.+.|
T Consensus 586 ~f~r~t~t~~ktTlYDm~Vdp~~k~v~t~cQDrnirif~i~sgKq---~k~FKgs~~~eG~lIKv~lDPSgiY~atScsd 662 (1080)
T KOG1408|consen 586 LFPRHTQTLSKTTLYDMAVDPTSKLVVTVCQDRNIRIFDIESGKQ---VKSFKGSRDHEGDLIKVILDPSGIYLATSCSD 662 (1080)
T ss_pred eccccccccccceEEEeeeCCCcceEEEEecccceEEEeccccce---eeeecccccCCCceEEEEECCCccEEEEeecC
Confidence 1221 23568899999988 999999999999999988743 12222334566778889999999999999999
Q ss_pred CcEEEEeCCCccccceeeeccceEEEE--EEeCCCEEEEeeCCCeEEEEecC
Q 047325 265 GLVNFWEREKQLSHGGVLKGHKLAVLC--LAAAGKLVFSGSADKTICVWRRD 314 (368)
Q Consensus 265 g~i~i~d~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~~~~~dg~i~iw~~~ 314 (368)
.++.++|+-++++. ....+|...|+. |.+|-+.|++.+.||.|.||.+.
T Consensus 663 ktl~~~Df~sgEcv-A~m~GHsE~VTG~kF~nDCkHlISvsgDgCIFvW~lp 713 (1080)
T KOG1408|consen 663 KTLCFVDFVSGECV-AQMTGHSEAVTGVKFLNDCKHLISVSGDGCIFVWKLP 713 (1080)
T ss_pred CceEEEEeccchhh-hhhcCcchheeeeeecccchhheeecCCceEEEEECc
Confidence 99999999998877 566788887755 55688999999999999999875
No 163
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.89 E-value=6.5e-22 Score=165.68 Aligned_cols=264 Identities=14% Similarity=0.221 Sum_probs=198.8
Q ss_pred cEEEEEecCC--EEEEccCCCcEEEEcCCc--ceecccCCCCCeeEEEEe--CCEEEEEeCCCeEEEEeecCCCcccccc
Q 047325 46 HIYSLAASKD--LLYTGSDSKNIRVWKNLK--EFCGFKASSGLVKAIVIS--GEKIFTGHQDGKIRVWKISPKNQSVHKR 119 (368)
Q Consensus 46 ~i~~~~~~~~--~l~s~~~dg~i~iw~~~~--~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~vw~~~~~~~~~~~~ 119 (368)
.|..++|.|+ .|+.+.. ..+.+||+.. .++++++|...|++++++ |+.+++|+.|..|.+|+..-.....
T Consensus 14 ci~d~afkPDGsqL~lAAg-~rlliyD~ndG~llqtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~klEG~Lk--- 89 (1081)
T KOG1538|consen 14 CINDIAFKPDGTQLILAAG-SRLLVYDTSDGTLLQPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKLEGILK--- 89 (1081)
T ss_pred chheeEECCCCceEEEecC-CEEEEEeCCCcccccccccccceEEEEEEccCCceeccCCCceeEEEecccccceee---
Confidence 7888888765 4444433 3688999874 577899999999999998 8999999999999999865433211
Q ss_pred CCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcCCCCEEEEEeCCCcEEEEEccCCeEEEEeecCCCce
Q 047325 120 AGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCGLLYTASWDRTFKVWRISDSKCLESVSAHDDAV 199 (368)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v 199 (368)
..|.+.|.|+.|+|-...|++|+. ...-+|......... .+ ....+
T Consensus 90 -------------------------------YSH~D~IQCMsFNP~~h~LasCsL-sdFglWS~~qK~V~K-~k-ss~R~ 135 (1081)
T KOG1538|consen 90 -------------------------------YSHNDAIQCMSFNPITHQLASCSL-SDFGLWSPEQKSVSK-HK-SSSRI 135 (1081)
T ss_pred -------------------------------eccCCeeeEeecCchHHHhhhcch-hhccccChhhhhHHh-hh-hheeE
Confidence 129999999999999889999986 457889876543222 21 34578
Q ss_pred EEEEeCCCC-eEEEEcCCCeEEEEEcCCCCCCcccccceeeccccccEEEEEEcCCC-----CEEEEecCCCcEEEEeCC
Q 047325 200 NSVVSSSEG-LIFTGSADGTVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSSSR-----SIVYCGSSDGLVNFWERE 273 (368)
Q Consensus 200 ~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-----~~l~~~~~dg~i~i~d~~ 273 (368)
.+++|..|| +++.|-.||+|.+-+-... ....+....+...+|.+++|+|+. ..+++.....++.+|.+.
T Consensus 136 ~~CsWtnDGqylalG~~nGTIsiRNk~gE----ek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~Ls 211 (1081)
T KOG1538|consen 136 ICCSWTNDGQYLALGMFNGTISIRNKNGE----EKVKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLS 211 (1081)
T ss_pred EEeeecCCCcEEEEeccCceEEeecCCCC----cceEEeCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEec
Confidence 899999999 9999999999999865432 222333445577899999999953 477888888888888887
Q ss_pred CccccceeeeccceEEEEEEeCCCEEEEeeCCCeEEEEecCCCceeeeEeeeccccCeeEEEEecCCeeeecCCcceEEE
Q 047325 274 KQLSHGGVLKGHKLAVLCLAAAGKLVFSGSADKTICVWRRDGAIHTCLSVLTGHTGPVKCLAVEEDRDSSSSTSSCAQRW 353 (368)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~w 353 (368)
....-.....+......+..++|.++..|+.|+.+++|. ..+..+.++......|+.++..|+++
T Consensus 212 G~~Igk~r~L~FdP~CisYf~NGEy~LiGGsdk~L~~fT---R~GvrLGTvg~~D~WIWtV~~~PNsQ------------ 276 (1081)
T KOG1538|consen 212 GKQIGKDRALNFDPCCISYFTNGEYILLGGSDKQLSLFT---RDGVRLGTVGEQDSWIWTVQAKPNSQ------------ 276 (1081)
T ss_pred ceeecccccCCCCchhheeccCCcEEEEccCCCceEEEe---ecCeEEeeccccceeEEEEEEccCCc------------
Confidence 543322222233334456667999999999999999994 33467777777888999999999999
Q ss_pred EEeeCCccccccc
Q 047325 354 IVYSGSLDKSDDD 366 (368)
Q Consensus 354 ~l~sg~~D~~v~i 366 (368)
.++.|+.||+|--
T Consensus 277 ~v~~GCqDGTiAC 289 (1081)
T KOG1538|consen 277 YVVVGCQDGTIAC 289 (1081)
T ss_pred eEEEEEccCeeeh
Confidence 6777888888743
No 164
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.89 E-value=1.2e-22 Score=179.53 Aligned_cols=247 Identities=15% Similarity=0.233 Sum_probs=185.0
Q ss_pred CCCeeEEEEe--CC----EEEEEeCCCeEEEEeecCCCccccccCCccccceeeeeccCCCCceeEecccceeeeeecCC
Q 047325 82 SGLVKAIVIS--GE----KIFTGHQDGKIRVWKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSD 155 (368)
Q Consensus 82 ~~~v~~~~~~--~~----~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (368)
....+.++|. +. .|+.|..||.|.+||.......... .....+..|.+
T Consensus 64 ~~rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~~~~~--------------------------~~la~~~~h~G 117 (1049)
T KOG0307|consen 64 SNRFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIANASE--------------------------EVLATKSKHTG 117 (1049)
T ss_pred cccceeeeecccCCCccceeeccccCCceEEecchhhccCcch--------------------------HHHhhhcccCC
Confidence 4567788886 33 5888999999999998753100000 00111223999
Q ss_pred CEeEEEEcCCC-CEEEEEeCCCcEEEEEccCCeEEEEee--cCCCceEEEEeCCCC--eEEEEcCCCeEEEEEcCCCCCC
Q 047325 156 AVSCMSLDQDC-GLLYTASWDRTFKVWRISDSKCLESVS--AHDDAVNSVVSSSEG--LIFTGSADGTVKVWKREQHGKG 230 (368)
Q Consensus 156 ~v~~~~~~~~~-~~l~~~~~d~~i~iwd~~~~~~~~~~~--~~~~~v~~~~~~~~~--~l~~~~~dg~i~i~d~~~~~~~ 230 (368)
.|..+.|++.. +.|++|+.||.|.|||+...+.-.... .....|.+++|+..- .|++++.+|.+.|||+|....
T Consensus 118 ~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~tP~~~~~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~p- 196 (1049)
T KOG0307|consen 118 PVLGLDFNPFQGNLLASGADDGEILIWDLNKPETPFTPGSQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKP- 196 (1049)
T ss_pred ceeeeeccccCCceeeccCCCCcEEEeccCCcCCCCCCCCCCCcccceEeccchhhhHHhhccCCCCCceeccccCCCc-
Confidence 99999999955 499999999999999998755443332 245679999999876 899999999999999996532
Q ss_pred cccccceeeccc--cccEEEEEEcCCCC-EEEEecCCC---cEEEEeCCCccccceeeeccceEEEEEEe---CCCEEEE
Q 047325 231 TKHSLAQTLLKQ--ECAVTALVVSSSRS-IVYCGSSDG---LVNFWEREKQLSHGGVLKGHKLAVLCLAA---AGKLVFS 301 (368)
Q Consensus 231 ~~~~~~~~~~~~--~~~i~~~~~~~~~~-~l~~~~~dg---~i~i~d~~~~~~~~~~~~~~~~~~~~~~~---~~~~l~~ 301 (368)
+..+..+ ...+..++|+|+.. .|++++.|. .|.+||+|....+...+.+|...++++++ |.++|++
T Consensus 197 -----ii~ls~~~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~assP~k~~~~H~~GilslsWc~~D~~lllS 271 (1049)
T KOG0307|consen 197 -----IIKLSDTPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFASSPLKILEGHQRGILSLSWCPQDPRLLLS 271 (1049)
T ss_pred -----ccccccCCCccceeeeeeCCCCceeeeeecCCCCCceeEeecccccCCchhhhcccccceeeeccCCCCchhhhc
Confidence 2223222 24578999999764 566666553 69999999877777888999999999887 4689999
Q ss_pred eeCCCeEEEEecCCCceeeeEeeeccccCeeEEEEecCCe-eeecC--CcceEEEEEeeCCccc
Q 047325 302 GSADKTICVWRRDGAIHTCLSVLTGHTGPVKCLAVEEDRD-SSSST--SSCAQRWIVYSGSLDK 362 (368)
Q Consensus 302 ~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~-~~~~~--~~~~~~w~l~sg~~D~ 362 (368)
++.|+.|.+|+.+++ +.+..+....+.+..+.|+|... .++.+ ++.+.++-+-+++.++
T Consensus 272 sgkD~~ii~wN~~tg--Evl~~~p~~~nW~fdv~w~pr~P~~~A~asfdgkI~I~sl~~~~~~~ 333 (1049)
T KOG0307|consen 272 SGKDNRIICWNPNTG--EVLGELPAQGNWCFDVQWCPRNPSVMAAASFDGKISIYSLQGTDTDL 333 (1049)
T ss_pred ccCCCCeeEecCCCc--eEeeecCCCCcceeeeeecCCCcchhhhheeccceeeeeeecCCccc
Confidence 999999999988876 88889988889999999999887 33333 4566666666665443
No 165
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.89 E-value=1.8e-22 Score=162.64 Aligned_cols=293 Identities=17% Similarity=0.237 Sum_probs=214.2
Q ss_pred CCCceeeeccCcCCcEEEEEec--CCEEEEccCCCcEEEEcCCcceec---ccCCCCCeeEEEEe----CCEEEEEeCCC
Q 047325 32 PQNGLIGSLVREEGHIYSLAAS--KDLLYTGSDSKNIRVWKNLKEFCG---FKASSGLVKAIVIS----GEKIFTGHQDG 102 (368)
Q Consensus 32 ~~~~~~~~~~~h~~~i~~~~~~--~~~l~s~~~dg~i~iw~~~~~~~~---~~~~~~~v~~~~~~----~~~l~s~~~dg 102 (368)
.+..+...|..|.+.|..|.|+ |+.|++|+.|..|.+||....... ..+|...|..-.|- ...+++++.||
T Consensus 130 qr~~l~~kL~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dg 209 (559)
T KOG1334|consen 130 QRLRLQKKLNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDG 209 (559)
T ss_pred HHhhhhhcccCCCCccceeeecccCceeeccCccceEEeehhhccCcccccccccccchhhhhccCCCCCcCceeccccC
Confidence 3445667789999999999997 679999999999999997754333 34676666655554 45799999999
Q ss_pred eEEEEeecCCCccccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcCCC-CEEEEEeCCCcEEEE
Q 047325 103 KIRVWKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDC-GLLYTASWDRTFKVW 181 (368)
Q Consensus 103 ~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~iw 181 (368)
.+++=.+......... ..+..|.++|.-++.-|+. ..|.+++.|+.+.-+
T Consensus 210 qvr~s~i~~t~~~e~t-----------------------------~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~ 260 (559)
T KOG1334|consen 210 QVRVSEILETGYVENT-----------------------------KRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHI 260 (559)
T ss_pred ceeeeeeccccceecc-----------------------------eecccccCccceeeecCCCCCcccccccccceeee
Confidence 9998877654432211 1122399999999999954 578999999999999
Q ss_pred EccCCeEEEEee---cCCC---ceEEEEeCCCC--eEEEEcCCCeEEEEEcCCCCCCcccccce------eeccccccEE
Q 047325 182 RISDSKCLESVS---AHDD---AVNSVVSSSEG--LIFTGSADGTVKVWKREQHGKGTKHSLAQ------TLLKQECAVT 247 (368)
Q Consensus 182 d~~~~~~~~~~~---~~~~---~v~~~~~~~~~--~l~~~~~dg~i~i~d~~~~~~~~~~~~~~------~~~~~~~~i~ 247 (368)
|++++.+...+. .+.. ....++..|.. .+++++.|..+++||.+...+......+. ........|+
T Consensus 261 Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~~P~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~IT 340 (559)
T KOG1334|consen 261 DLRQDVPAEKFVCREADEKERVGLYTIAVDPRNTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNIT 340 (559)
T ss_pred eeccCCccceeeeeccCCccceeeeeEecCCCCccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccce
Confidence 999876544332 2333 56788888877 89999999999999998654321111111 1223346799
Q ss_pred EEEEcCCCCEEEEecCCCcEEEEeCCC--c----------cccceeeeccceE--EEEEE---eCCCEEEEeeCCCeEEE
Q 047325 248 ALVVSSSRSIVYCGSSDGLVNFWEREK--Q----------LSHGGVLKGHKLA--VLCLA---AAGKLVFSGSADKTICV 310 (368)
Q Consensus 248 ~~~~~~~~~~l~~~~~dg~i~i~d~~~--~----------~~~~~~~~~~~~~--~~~~~---~~~~~l~~~~~dg~i~i 310 (368)
+++|+.++.-|+++-.|-.|++|.-.. + ......+++|... |..+. |...++++|+.-|.|.|
T Consensus 341 gl~Ysh~~sElLaSYnDe~IYLF~~~~~~G~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFi 420 (559)
T KOG1334|consen 341 GLVYSHDGSELLASYNDEDIYLFNKSMGDGSEPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFI 420 (559)
T ss_pred eEEecCCccceeeeecccceEEeccccccCCCCCCCcchhhccchhhcccccccccceeeeccCccceEEecCccceEEE
Confidence 999998888788888888899995331 1 1222346777643 34444 45789999999999999
Q ss_pred EecCCCceeeeEeeeccccCeeEEEEecCCeeeecCCcceEEEEEeeCCcccccccC
Q 047325 311 WRRDGAIHTCLSVLTGHTGPVKCLAVEEDRDSSSSTSSCAQRWIVYSGSLDKSDDDV 367 (368)
Q Consensus 311 w~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~w~l~sg~~D~~v~i~ 367 (368)
|+-.+. +.+..+.+-..-|+||.-+|--. +|++.|.|.-||||
T Consensus 421 W~K~t~--eii~~MegDr~VVNCLEpHP~~P------------vLAsSGid~DVKIW 463 (559)
T KOG1334|consen 421 WDKKTG--EIIRFMEGDRHVVNCLEPHPHLP------------VLASSGIDHDVKIW 463 (559)
T ss_pred Eecchh--HHHHHhhcccceEeccCCCCCCc------------hhhccCCccceeee
Confidence 977665 66777777666899999999988 67777777777777
No 166
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.88 E-value=5.2e-22 Score=152.39 Aligned_cols=241 Identities=16% Similarity=0.304 Sum_probs=173.8
Q ss_pred cCCcEEEEEec-----CC-EEEEccCCCcEEEEcCCcc--eecccCCCCCeeEEEEe---CCEEEEEeCCCeEEEEeecC
Q 047325 43 EEGHIYSLAAS-----KD-LLYTGSDSKNIRVWKNLKE--FCGFKASSGLVKAIVIS---GEKIFTGHQDGKIRVWKISP 111 (368)
Q Consensus 43 h~~~i~~~~~~-----~~-~l~s~~~dg~i~iw~~~~~--~~~~~~~~~~v~~~~~~---~~~l~s~~~dg~i~vw~~~~ 111 (368)
|...-+.+++. ++ ++|.|+.-|.|||.|+.+. ...+.+|...|+.+.+. .+++++++.|..|++|++++
T Consensus 88 ~~Esfytcsw~yd~~~~~p~la~~G~~GvIrVid~~~~~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~ 167 (385)
T KOG1034|consen 88 HDESFYTCSWSYDSNTGNPFLAAGGYLGVIRVIDVVSGQCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQT 167 (385)
T ss_pred CCcceEEEEEEecCCCCCeeEEeecceeEEEEEecchhhhccceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccC
Confidence 44445555552 34 8999999999999998754 45688999999999998 56999999999999999998
Q ss_pred CCccccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcCCCCEEEEEeCCCcEEEEEccCCeEEE-
Q 047325 112 KNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCGLLYTASWDRTFKVWRISDSKCLE- 190 (368)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~- 190 (368)
..+...+-. +.||.+.|.++.|++++.+|++++.|.+|++|++...+...
T Consensus 168 ~~Cv~VfGG-----------------------------~egHrdeVLSvD~~~~gd~i~ScGmDhslk~W~l~~~~f~~~ 218 (385)
T KOG1034|consen 168 DVCVAVFGG-----------------------------VEGHRDEVLSVDFSLDGDRIASCGMDHSLKLWRLNVKEFKNK 218 (385)
T ss_pred CeEEEEecc-----------------------------cccccCcEEEEEEcCCCCeeeccCCcceEEEEecChhHHhhh
Confidence 876544332 24599999999999999999999999999999997432111
Q ss_pred ---------------------------EeecCCCceEEEEeCCCCeEEEEcCCCeEEEEEcCCCCCC--------ccccc
Q 047325 191 ---------------------------SVSAHDDAVNSVVSSSEGLIFTGSADGTVKVWKREQHGKG--------TKHSL 235 (368)
Q Consensus 191 ---------------------------~~~~~~~~v~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~--------~~~~~ 235 (368)
+-.-|...|.|+.|-- .++++-+-++.|..|..-..++. .....
T Consensus 219 lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVDCvrw~g-d~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti 297 (385)
T KOG1034|consen 219 LELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVDCVRWFG-DFILSKSCENAIVCWKPGKLEESIHNVKPPESATTI 297 (385)
T ss_pred hhhhcccCCCCccCcCCccccccccccccccccchHHHHHHHh-hheeecccCceEEEEecchhhhhhhccCCCccceee
Confidence 1112455566666543 37888888999999988221110 00111
Q ss_pred ceeeccccccEEE--EEEcCCCCEEEEecCCCcEEEEeCCCccccceeeecc-----ceEEEEEEeCCCEEEEeeCCCeE
Q 047325 236 AQTLLKQECAVTA--LVVSSSRSIVYCGSSDGLVNFWEREKQLSHGGVLKGH-----KLAVLCLAAAGKLVFSGSADKTI 308 (368)
Q Consensus 236 ~~~~~~~~~~i~~--~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~-----~~~~~~~~~~~~~l~~~~~dg~i 308 (368)
...+.-....|.- .+|.|-++.|+.|...|.|++||++...........| ...-.+|+-|+.+|+...+|++|
T Consensus 298 ~~~~~~~~c~iWfirf~~d~~~~~la~gnq~g~v~vwdL~~~ep~~~ttl~~s~~~~tVRQ~sfS~dgs~lv~vcdd~~V 377 (385)
T KOG1034|consen 298 LGEFDYPMCDIWFIRFAFDPWQKMLALGNQSGKVYVWDLDNNEPPKCTTLTHSKSGSTVRQTSFSRDGSILVLVCDDGTV 377 (385)
T ss_pred eeEeccCccceEEEEEeecHHHHHHhhccCCCcEEEEECCCCCCccCceEEeccccceeeeeeecccCcEEEEEeCCCcE
Confidence 2222333344444 4566778899999999999999999766543222222 23337888899999999999999
Q ss_pred EEEec
Q 047325 309 CVWRR 313 (368)
Q Consensus 309 ~iw~~ 313 (368)
--||.
T Consensus 378 wrwdr 382 (385)
T KOG1034|consen 378 WRWDR 382 (385)
T ss_pred EEEEe
Confidence 99874
No 167
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.88 E-value=3.7e-21 Score=151.23 Aligned_cols=201 Identities=18% Similarity=0.339 Sum_probs=159.9
Q ss_pred eccCcCCcEEEEEecCC---EEEEccCCCcEEEEcCCc---------ceecccCCCCCeeEEEEe---CCEEEEEeCCCe
Q 047325 39 SLVREEGHIYSLAASKD---LLYTGSDSKNIRVWKNLK---------EFCGFKASSGLVKAIVIS---GEKIFTGHQDGK 103 (368)
Q Consensus 39 ~~~~h~~~i~~~~~~~~---~l~s~~~dg~i~iw~~~~---------~~~~~~~~~~~v~~~~~~---~~~l~s~~~dg~ 103 (368)
.+.||+++|..++|++- .||+||.|.+|.||++.. ....+.+|...|.-+.|. .+.|++++.|.+
T Consensus 76 ~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn~ 155 (472)
T KOG0303|consen 76 LVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDNT 155 (472)
T ss_pred CccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccCCce
Confidence 46799999999999743 999999999999998642 355688999999999998 789999999999
Q ss_pred EEEEeecCCCccccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcCCCCEEEEEeCCCcEEEEEc
Q 047325 104 IRVWKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCGLLYTASWDRTFKVWRI 183 (368)
Q Consensus 104 i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~ 183 (368)
|.+|++.+++...... |.+.|.++.|+.||.+|++.+.|..|+|||.
T Consensus 156 v~iWnv~tgeali~l~---------------------------------hpd~i~S~sfn~dGs~l~TtckDKkvRv~dp 202 (472)
T KOG0303|consen 156 VSIWNVGTGEALITLD---------------------------------HPDMVYSMSFNRDGSLLCTTCKDKKVRVIDP 202 (472)
T ss_pred EEEEeccCCceeeecC---------------------------------CCCeEEEEEeccCCceeeeecccceeEEEcC
Confidence 9999999997544322 9999999999999999999999999999999
Q ss_pred cCCeEEEEeecCCCc-eEEEEeCCCCeEEEEc----CCCeEEEEEcCCCCCCcccccceeeccccccEEEEEEcCCCCEE
Q 047325 184 SDSKCLESVSAHDDA-VNSVVSSSEGLIFTGS----ADGTVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSSSRSIV 258 (368)
Q Consensus 184 ~~~~~~~~~~~~~~~-v~~~~~~~~~~l~~~~----~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l 258 (368)
++++.+..-.+|.+. -..+.|..++.+++.+ ++..+-+||...... ............|.---|.++.+++
T Consensus 203 r~~~~v~e~~~heG~k~~Raifl~~g~i~tTGfsr~seRq~aLwdp~nl~e----P~~~~elDtSnGvl~PFyD~dt~iv 278 (472)
T KOG0303|consen 203 RRGTVVSEGVAHEGAKPARAIFLASGKIFTTGFSRMSERQIALWDPNNLEE----PIALQELDTSNGVLLPFYDPDTSIV 278 (472)
T ss_pred CCCcEeeecccccCCCcceeEEeccCceeeeccccccccceeccCcccccC----cceeEEeccCCceEEeeecCCCCEE
Confidence 999999988888753 3445566677555554 377899999876543 1222222344567667788888876
Q ss_pred E-EecCCCcEEEEeCCCcc
Q 047325 259 Y-CGSSDGLVNFWEREKQL 276 (368)
Q Consensus 259 ~-~~~~dg~i~i~d~~~~~ 276 (368)
. +|-.|+.|+.|.+....
T Consensus 279 Yl~GKGD~~IRYyEit~d~ 297 (472)
T KOG0303|consen 279 YLCGKGDSSIRYFEITNEP 297 (472)
T ss_pred EEEecCCcceEEEEecCCC
Confidence 5 46679999999987544
No 168
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.88 E-value=7.7e-22 Score=161.80 Aligned_cols=265 Identities=21% Similarity=0.316 Sum_probs=183.9
Q ss_pred eeccCcCCcEEEEEecCC--EEEEccCCCcEEEEcCC----------cceecccCCCCCeeEEEEe--CCEEEEEeCCCe
Q 047325 38 GSLVREEGHIYSLAASKD--LLYTGSDSKNIRVWKNL----------KEFCGFKASSGLVKAIVIS--GEKIFTGHQDGK 103 (368)
Q Consensus 38 ~~~~~h~~~i~~~~~~~~--~l~s~~~dg~i~iw~~~----------~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~ 103 (368)
.++..|.+.|+.++|.+- .|++|+.||++++|++. .++.+|.+|.++|.|+++. ++.+++|+-||+
T Consensus 288 ~tl~s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~ysgg~Dg~ 367 (577)
T KOG0642|consen 288 FTLRSHDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCYSGGIDGT 367 (577)
T ss_pred eeeecchhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCceEEEeeccCce
Confidence 378889999999999755 89999999999999983 3467899999999999997 889999999999
Q ss_pred EEEEeecCCCccccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcCCCCEEEEEeCCCcEEEEEc
Q 047325 104 IRVWKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCGLLYTASWDRTFKVWRI 183 (368)
Q Consensus 104 i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~ 183 (368)
|+.|++....-...... ...-...+.||.+.|+.+++++....|++++.||++++|+.
T Consensus 368 I~~w~~p~n~dp~ds~d----------------------p~vl~~~l~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~ 425 (577)
T KOG0642|consen 368 IRCWNLPPNQDPDDSYD----------------------PSVLSGTLLGHTDAVWLLALSSTKDRLLSCSSDGTVRLWEP 425 (577)
T ss_pred eeeeccCCCCCcccccC----------------------cchhccceeccccceeeeeecccccceeeecCCceEEeecc
Confidence 99998863221110000 00112456789999999999999899999999999999998
Q ss_pred cCCeEEEEeecC--CCceEEEEeCCCC--eEEEEcCCCeEEEEEcCCCCCCcccc-cceeeccccccEEEEEEcCCCCEE
Q 047325 184 SDSKCLESVSAH--DDAVNSVVSSSEG--LIFTGSADGTVKVWKREQHGKGTKHS-LAQTLLKQECAVTALVVSSSRSIV 258 (368)
Q Consensus 184 ~~~~~~~~~~~~--~~~v~~~~~~~~~--~l~~~~~dg~i~i~d~~~~~~~~~~~-~~~~~~~~~~~i~~~~~~~~~~~l 258 (368)
....+ .++... .+.-.++.+.... ..++...-+.-.+++........... ...........+..+..+|...+.
T Consensus 426 ~~~~~-~~f~~~~e~g~Plsvd~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~ 504 (577)
T KOG0642|consen 426 TEESP-CTFGEPKEHGYPLSVDRTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTADIT 504 (577)
T ss_pred CCcCc-cccCCccccCCcceEeeccchhHhhhhhcccccccchhhhhhhheeeccccCCCcccccCccceEEecCCCCee
Confidence 76665 333322 2233445544333 33333333333333333221100000 000011112446778889999999
Q ss_pred EEecCCCcEEEEeCCCccccceeeeccceEEE--EEEeCCCEEEEeeCCCeEEEEecCCCceeeeEeeeccc
Q 047325 259 YCGSSDGLVNFWEREKQLSHGGVLKGHKLAVL--CLAAAGKLVFSGSADKTICVWRRDGAIHTCLSVLTGHT 328 (368)
Q Consensus 259 ~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~ 328 (368)
+++..|+.|+++|..++... .....|...+. ++.++|.+|++|+.||.+++|.++.. .++.....|.
T Consensus 505 ~~~hed~~Ir~~dn~~~~~l-~s~~a~~~svtslai~~ng~~l~s~s~d~sv~l~kld~k--~~~~es~~~r 573 (577)
T KOG0642|consen 505 FTAHEDRSIRFFDNKTGKIL-HSMVAHKDSVTSLAIDPNGPYLMSGSHDGSVRLWKLDVK--TCVLESTAHR 573 (577)
T ss_pred EecccCCceecccccccccc-hheeeccceecceeecCCCceEEeecCCceeehhhccch--heeecccccc
Confidence 99999999999999987666 45556776664 55578999999999999999988765 4555555454
No 169
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.88 E-value=1.7e-20 Score=141.91 Aligned_cols=266 Identities=15% Similarity=0.174 Sum_probs=188.2
Q ss_pred cEEEEEec-----CCEEEEccC----CCcEEEEcCCcc---ee--cccCCCCCeeEEEEe-------CCEEEEEeCCCeE
Q 047325 46 HIYSLAAS-----KDLLYTGSD----SKNIRVWKNLKE---FC--GFKASSGLVKAIVIS-------GEKIFTGHQDGKI 104 (368)
Q Consensus 46 ~i~~~~~~-----~~~l~s~~~----dg~i~iw~~~~~---~~--~~~~~~~~v~~~~~~-------~~~l~s~~~dg~i 104 (368)
.++++.|+ ..+||.|+. .+.|.|-.+... .. .-..|.-+++.+.|. .+.|++++ ..+
T Consensus 46 ~lya~~Ws~~~~~~~rla~gS~~Ee~~Nkvqiv~ld~~s~e~~~~a~fd~~YP~tK~~wiPd~~g~~pdlLATs~--D~L 123 (364)
T KOG0290|consen 46 PLYAMNWSVRPDKKFRLAVGSFIEEYNNKVQIVQLDEDSGELVEDANFDHPYPVTKLMWIPDSKGVYPDLLATSS--DFL 123 (364)
T ss_pred ceeeeccccCCCcceeEEEeeeccccCCeeEEEEEccCCCceeccCCCCCCCCccceEecCCccccCcchhhccc--CeE
Confidence 46777776 228888875 345666544321 11 124688899999997 23455443 489
Q ss_pred EEEeecCCCccccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcC-CCCEEEEEeCCCcEEEEEc
Q 047325 105 RVWKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQ-DCGLLYTASWDRTFKVWRI 183 (368)
Q Consensus 105 ~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~iwd~ 183 (368)
|+|.+...+........... ..-..+..++++..|+. +.+++.+++-|-+..|||+
T Consensus 124 RlWri~~ee~~~~~~~~L~~-----------------------~kns~~~aPlTSFDWne~dp~~igtSSiDTTCTiWdi 180 (364)
T KOG0290|consen 124 RLWRIGDEESRVELQSVLNN-----------------------NKNSEFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDI 180 (364)
T ss_pred EEEeccCcCCceehhhhhcc-----------------------CcccccCCcccccccccCCcceeEeecccCeEEEEEE
Confidence 99999854322221110000 00112677899999988 6779999999999999999
Q ss_pred cCCe---EEEEeecCCCceEEEEeCCCC--eEEEEcCCCeEEEEEcCCCCCCcccccceeeccccccEEEEEEcC-CCCE
Q 047325 184 SDSK---CLESVSAHDDAVNSVVSSSEG--LIFTGSADGTVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSS-SRSI 257 (368)
Q Consensus 184 ~~~~---~~~~~~~~~~~v~~~~~~~~~--~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~ 257 (368)
+++. ....+-+|...|..++|..++ .+++.+.||.+|+||+|.... ...+..-.....+...++|++ |.++
T Consensus 181 e~~~~~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leH---STIIYE~p~~~~pLlRLswnkqDpny 257 (364)
T KOG0290|consen 181 ETGVSGTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEH---STIIYEDPSPSTPLLRLSWNKQDPNY 257 (364)
T ss_pred eeccccceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEeccccc---ceEEecCCCCCCcceeeccCcCCchH
Confidence 9863 356677899999999999976 999999999999999997532 122233233356788999988 4567
Q ss_pred EEEecCC-CcEEEEeCCCccccceeeeccceEEEEEEe---CCCEEEEeeCCCeEEEEecCCCce----eeeEeeecccc
Q 047325 258 VYCGSSD-GLVNFWEREKQLSHGGVLKGHKLAVLCLAA---AGKLVFSGSADKTICVWRRDGAIH----TCLSVLTGHTG 329 (368)
Q Consensus 258 l~~~~~d-g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~---~~~~l~~~~~dg~i~iw~~~~~~~----~~~~~~~~h~~ 329 (368)
+|+-..| ..|.+.|++....+...+.+|...|..+++ ....|+++++|..+.+||+..... .++..+. -.+
T Consensus 258 mATf~~dS~~V~iLDiR~P~tpva~L~~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~~~~~~~dPilay~-a~~ 336 (364)
T KOG0290|consen 258 MATFAMDSNKVVILDIRVPCTPVARLRNHQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQMPRENGEDPILAYT-AGG 336 (364)
T ss_pred HhhhhcCCceEEEEEecCCCcceehhhcCcccccceEecCCCCceeeecCCcceEEEEecccccccCCCCchhhhh-ccc
Confidence 7765444 579999999988888899999999966665 478999999999999999975422 2222333 456
Q ss_pred CeeEEEEecCC
Q 047325 330 PVKCLAVEEDR 340 (368)
Q Consensus 330 ~v~~l~~~~~~ 340 (368)
.|+.+.|++..
T Consensus 337 EVNqi~Ws~~~ 347 (364)
T KOG0290|consen 337 EVNQIQWSSSQ 347 (364)
T ss_pred eeeeeeecccC
Confidence 79999999653
No 170
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.88 E-value=3.4e-20 Score=145.92 Aligned_cols=235 Identities=17% Similarity=0.254 Sum_probs=171.1
Q ss_pred ceecccCCCCCeeEEEEe---CCEEEEEeCCCeEEEEeecCCCccccccCCccccceeeeeccCCCCceeEecccceeee
Q 047325 74 EFCGFKASSGLVKAIVIS---GEKIFTGHQDGKIRVWKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALW 150 (368)
Q Consensus 74 ~~~~~~~~~~~v~~~~~~---~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (368)
....+.+|+++|..++|+ .+.|++|+.|.+|.||++..+....... .+...+
T Consensus 73 ~~P~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~lt-------------------------epvv~L 127 (472)
T KOG0303|consen 73 SYPLVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLT-------------------------EPVVEL 127 (472)
T ss_pred CCCCccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcc-------------------------cceEEE
Confidence 344678999999999998 6789999999999999998765433222 245667
Q ss_pred eecCCCEeEEEEcCC-CCEEEEEeCCCcEEEEEccCCeEEEEeecCCCceEEEEeCCCC-eEEEEcCCCeEEEEEcCCCC
Q 047325 151 IRHSDAVSCMSLDQD-CGLLYTASWDRTFKVWRISDSKCLESVSAHDDAVNSVVSSSEG-LIFTGSADGTVKVWKREQHG 228 (368)
Q Consensus 151 ~~~~~~v~~~~~~~~-~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~ 228 (368)
.||...|--++|+|. .+.|++++.|.+|.+||+.+++.+.++. |...|.++.|+.+| +|++++.|..|+|||.+.+.
T Consensus 128 ~gH~rrVg~V~wHPtA~NVLlsag~Dn~v~iWnv~tgeali~l~-hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~ 206 (472)
T KOG0303|consen 128 YGHQRRVGLVQWHPTAPNVLLSAGSDNTVSIWNVGTGEALITLD-HPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGT 206 (472)
T ss_pred eecceeEEEEeecccchhhHhhccCCceEEEEeccCCceeeecC-CCCeEEEEEeccCCceeeeecccceeEEEcCCCCc
Confidence 889999999999994 5688999999999999999999999988 99999999999999 99999999999999999773
Q ss_pred CCcccccceeeccccc-cEEEEEEcCCCCEEEEec---CCCcEEEEeCCCccccceee--eccceEEE-EEEeCCCEEE-
Q 047325 229 KGTKHSLAQTLLKQEC-AVTALVVSSSRSIVYCGS---SDGLVNFWEREKQLSHGGVL--KGHKLAVL-CLAAAGKLVF- 300 (368)
Q Consensus 229 ~~~~~~~~~~~~~~~~-~i~~~~~~~~~~~l~~~~---~dg~i~i~d~~~~~~~~~~~--~~~~~~~~-~~~~~~~~l~- 300 (368)
.+.....|.+ .-....|..++.++-+|. ++..+-+||...-..+.... ....+-.+ -+.+|..+++
T Consensus 207 ------~v~e~~~heG~k~~Raifl~~g~i~tTGfsr~seRq~aLwdp~nl~eP~~~~elDtSnGvl~PFyD~dt~ivYl 280 (472)
T KOG0303|consen 207 ------VVSEGVAHEGAKPARAIFLASGKIFTTGFSRMSERQIALWDPNNLEEPIALQELDTSNGVLLPFYDPDTSIVYL 280 (472)
T ss_pred ------EeeecccccCCCcceeEEeccCceeeeccccccccceeccCcccccCcceeEEeccCCceEEeeecCCCCEEEE
Confidence 3444445543 345566777888555554 46789999987655443222 22222222 2345666555
Q ss_pred EeeCCCeEEEEecCCCc--eeeeEeeeccccCeeEEEEecCCe
Q 047325 301 SGSADKTICVWRRDGAI--HTCLSVLTGHTGPVKCLAVEEDRD 341 (368)
Q Consensus 301 ~~~~dg~i~iw~~~~~~--~~~~~~~~~h~~~v~~l~~~~~~~ 341 (368)
+|-.|+.||.|.+.... ...+.++. ...+=..+.|-|..-
T Consensus 281 ~GKGD~~IRYyEit~d~P~~hyln~f~-S~epQRG~g~mPKRG 322 (472)
T KOG0303|consen 281 CGKGDSSIRYFEITNEPPFVHYLNTFS-SKEPQRGMGFMPKRG 322 (472)
T ss_pred EecCCcceEEEEecCCCceeEEecccc-cCCcccccccccccc
Confidence 55679999999987653 12223332 234455666666543
No 171
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.87 E-value=9e-20 Score=162.50 Aligned_cols=253 Identities=18% Similarity=0.285 Sum_probs=169.3
Q ss_pred CCCceeeeccCcCCcEEEEEecC---CEEEEccCCCcEEEEcCCcc---------eecccCCCCCeeEEEEe--CCEEEE
Q 047325 32 PQNGLIGSLVREEGHIYSLAASK---DLLYTGSDSKNIRVWKNLKE---------FCGFKASSGLVKAIVIS--GEKIFT 97 (368)
Q Consensus 32 ~~~~~~~~~~~h~~~i~~~~~~~---~~l~s~~~dg~i~iw~~~~~---------~~~~~~~~~~v~~~~~~--~~~l~s 97 (368)
+.+.++.++..|+..|..++.+. .+++|||.||+|++||..+. ..++......+.++... ++.+|.
T Consensus 1036 p~G~lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~~~Av 1115 (1431)
T KOG1240|consen 1036 PRGILVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGDQFAV 1115 (1431)
T ss_pred ccceEeehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCCeEEE
Confidence 56889999999999999988863 49999999999999997532 22344345666666654 889999
Q ss_pred EeCCCeEEEEeecCCCccc-cccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEE-EEcC-CC-CEEEEEe
Q 047325 98 GHQDGKIRVWKISPKNQSV-HKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCM-SLDQ-DC-GLLYTAS 173 (368)
Q Consensus 98 ~~~dg~i~vw~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~-~~~~-~~-~~l~~~~ 173 (368)
++.||.|++.+++..+... .......+. .. ..+.+.++ ++.. .+ ..++.+.
T Consensus 1116 ~t~DG~v~~~~id~~~~~~~~~~~~ri~n------------------------~~-~~g~vv~m~a~~~~~~S~~lvy~T 1170 (1431)
T KOG1240|consen 1116 STKDGSVRVLRIDHYNVSKRVATQVRIPN------------------------LK-KDGVVVSMHAFTAIVQSHVLVYAT 1170 (1431)
T ss_pred EcCCCeEEEEEccccccccceeeeeeccc------------------------cc-CCCceEEeecccccccceeEEEEE
Confidence 9999999999998632110 000000000 00 11223222 3322 23 3677888
Q ss_pred CCCcEEEEEccCCeEEEEeec--CCCceEEEEeCCCC-eEEEEcCCCeEEEEEcCCCCCCcccccceeeccccccEEEEE
Q 047325 174 WDRTFKVWRISDSKCLESVSA--HDDAVNSVVSSSEG-LIFTGSADGTVKVWKREQHGKGTKHSLAQTLLKQECAVTALV 250 (368)
Q Consensus 174 ~d~~i~iwd~~~~~~~~~~~~--~~~~v~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~i~~~~ 250 (368)
..+.|..||++.......++. ..+.|++++.+|.+ .++.|+..|.+.+||+|-.-. ......++..+++.+.
T Consensus 1171 ~~~~iv~~D~r~~~~~w~lk~~~~hG~vTSi~idp~~~WlviGts~G~l~lWDLRF~~~-----i~sw~~P~~~~i~~v~ 1245 (1431)
T KOG1240|consen 1171 DLSRIVSWDTRMRHDAWRLKNQLRHGLVTSIVIDPWCNWLVIGTSRGQLVLWDLRFRVP-----ILSWEHPARAPIRHVW 1245 (1431)
T ss_pred eccceEEecchhhhhHHhhhcCccccceeEEEecCCceEEEEecCCceEEEEEeecCce-----eecccCcccCCcceEE
Confidence 889999999988766555543 45789999999999 999999999999999986522 2333345557777777
Q ss_pred EcCC---CCEEEE-ec-CCCcEEEEeCCCccccceeeeccce----------------E---E-EEEEeCCCEEEEeeCC
Q 047325 251 VSSS---RSIVYC-GS-SDGLVNFWEREKQLSHGGVLKGHKL----------------A---V-LCLAAAGKLVFSGSAD 305 (368)
Q Consensus 251 ~~~~---~~~l~~-~~-~dg~i~i~d~~~~~~~~~~~~~~~~----------------~---~-~~~~~~~~~l~~~~~d 305 (368)
.+|- ....++ +. ..+.|.+|++.++............ . + .++.--+..+.+|+.|
T Consensus 1246 ~~~~~~~~S~~vs~~~~~~nevs~wn~~~g~~~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~ltggsd 1325 (1431)
T KOG1240|consen 1246 LCPTYPQESVSVSAGSSSNNEVSTWNMETGLRQTVLWASDGAPILSYALPSNDARKPDSLAGISCGVCEKNGFLLTGGSD 1325 (1431)
T ss_pred eeccCCCCceEEEecccCCCceeeeecccCcceEEEEcCCCCcchhhhcccccCCCCCcccceeeecccCCceeeecCCc
Confidence 7662 234444 44 5788999999877544322222011 1 1 2222236789999999
Q ss_pred CeEEEEecC
Q 047325 306 KTICVWRRD 314 (368)
Q Consensus 306 g~i~iw~~~ 314 (368)
..|+.||..
T Consensus 1326 ~kIR~wD~~ 1334 (1431)
T KOG1240|consen 1326 MKIRKWDPT 1334 (1431)
T ss_pred cceeeccCC
Confidence 999999964
No 172
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.87 E-value=1e-20 Score=151.39 Aligned_cols=202 Identities=15% Similarity=0.139 Sum_probs=156.9
Q ss_pred eeecCCCEeEEEEcCCC--CEEEEEeCCCcEEEEEccCC----eEEEEeecCCCceEEEEeCCCC--eEEEEcCCCeEEE
Q 047325 150 WIRHSDAVSCMSLDQDC--GLLYTASWDRTFKVWRISDS----KCLESVSAHDDAVNSVVSSSEG--LIFTGSADGTVKV 221 (368)
Q Consensus 150 ~~~~~~~v~~~~~~~~~--~~l~~~~~d~~i~iwd~~~~----~~~~~~~~~~~~v~~~~~~~~~--~l~~~~~dg~i~i 221 (368)
..-+..+|++++|+|.. +++++|...|+|-+||+.+. ..+..+..|..+|.++.|+|.+ .+++.+.||+|++
T Consensus 182 ~kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssSyDGtiR~ 261 (498)
T KOG4328|consen 182 AKVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQIYSSSYDGTIRL 261 (498)
T ss_pred eEecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChhheeeeccCceeee
Confidence 34488999999999954 58899999999999999532 2356677899999999999988 9999999999999
Q ss_pred EEcCCCCCCcccccceeeccccccEEEEEEcCCCCEEEEecCCCcEEEEeCCCccccceeeeccceEEEEEEe---CCCE
Q 047325 222 WKREQHGKGTKHSLAQTLLKQECAVTALVVSSSRSIVYCGSSDGLVNFWEREKQLSHGGVLKGHKLAVLCLAA---AGKL 298 (368)
Q Consensus 222 ~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~---~~~~ 298 (368)
-|++.... ..+.........+..+.|+.+...++.+..=|...+||+++.......+.-|...|..++. ...+
T Consensus 262 ~D~~~~i~----e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~kKI~sv~~NP~~p~~ 337 (498)
T KOG4328|consen 262 QDFEGNIS----EEVLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYENLRLHKKKITSVALNPVCPWF 337 (498)
T ss_pred eeecchhh----HHHhhcCccceeeeeccccCCCccEEEeecccceEEEEeecCCccchhhhhhhcccceeecCCCCchh
Confidence 99986521 1222333355667888898888888888888899999999876655666667777766654 4679
Q ss_pred EEEeeCCCeEEEEecCCCceee--eEeeeccccCeeEEEEecCCeeeecCCcceEEEEEeeCCcccccccC
Q 047325 299 VFSGSADKTICVWRRDGAIHTC--LSVLTGHTGPVKCLAVEEDRDSSSSTSSCAQRWIVYSGSLDKSDDDV 367 (368)
Q Consensus 299 l~~~~~dg~i~iw~~~~~~~~~--~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~w~l~sg~~D~~v~i~ 367 (368)
|++++.|++.+|||++....+. +.....|...|.+..|||++. .|+|-+.|..||||
T Consensus 338 laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~g------------tl~TT~~D~~IRv~ 396 (498)
T KOG4328|consen 338 LATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGG------------TLLTTCQDNEIRVF 396 (498)
T ss_pred eeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCC------------ceEeeccCCceEEe
Confidence 9999999999999997532222 344457999999999999998 46666666666665
No 173
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.86 E-value=2.2e-20 Score=156.70 Aligned_cols=245 Identities=13% Similarity=0.198 Sum_probs=187.8
Q ss_pred cccccccCCCceeeeccCcCCcEEEEEec--CCEEEEccCCCcEEEEcCCcceecccCCCCCeeEEEEe--CCEEEEEeC
Q 047325 25 SQFEENLPQNGLIGSLVREEGHIYSLAAS--KDLLYTGSDSKNIRVWKNLKEFCGFKASSGLVKAIVIS--GEKIFTGHQ 100 (368)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~h~~~i~~~~~~--~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~ 100 (368)
+...-+...+.++.++++|++.|+|++++ |+++|+|+.|..|.+|+..-+-..--.|...|.|+.|+ ...|++++.
T Consensus 34 rlliyD~ndG~llqtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~klEG~LkYSH~D~IQCMsFNP~~h~LasCsL 113 (1081)
T KOG1538|consen 34 RLLVYDTSDGTLLQPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKLEGILKYSHNDAIQCMSFNPITHQLASCSL 113 (1081)
T ss_pred EEEEEeCCCcccccccccccceEEEEEEccCCceeccCCCceeEEEecccccceeeeccCCeeeEeecCchHHHhhhcch
Confidence 34456678899999999999999999997 55999999999999999764433334699999999999 778888876
Q ss_pred CCeEEEEeecCCCccccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcCCCCEEEEEeCCCcEEE
Q 047325 101 DGKIRVWKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCGLLYTASWDRTFKV 180 (368)
Q Consensus 101 dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i 180 (368)
. ..-+|..+........ ....|.+.+|..||++++.|-.+|+|.+
T Consensus 114 s-dFglWS~~qK~V~K~k----------------------------------ss~R~~~CsWtnDGqylalG~~nGTIsi 158 (1081)
T KOG1538|consen 114 S-DFGLWSPEQKSVSKHK----------------------------------SSSRIICCSWTNDGQYLALGMFNGTISI 158 (1081)
T ss_pred h-hccccChhhhhHHhhh----------------------------------hheeEEEeeecCCCcEEEEeccCceEEe
Confidence 4 5678887655422111 3457889999999999999999999999
Q ss_pred EEccCCeEEEEee---cCCCceEEEEeCCCC------eEEEEcCCCeEEEEEcCCCCCCcccccceeeccccccEEEEEE
Q 047325 181 WRISDSKCLESVS---AHDDAVNSVVSSSEG------LIFTGSADGTVKVWKREQHGKGTKHSLAQTLLKQECAVTALVV 251 (368)
Q Consensus 181 wd~~~~~~~~~~~---~~~~~v~~~~~~~~~------~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 251 (368)
-+- ++++...+. +.+.+|.+++|+|.. .+++.....++.++.+... .+..-....-...|+.+
T Consensus 159 RNk-~gEek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~LsG~-------~Igk~r~L~FdP~CisY 230 (1081)
T KOG1538|consen 159 RNK-NGEEKVKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLSGK-------QIGKDRALNFDPCCISY 230 (1081)
T ss_pred ecC-CCCcceEEeCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEecce-------eecccccCCCCchhhee
Confidence 874 454444444 467899999999863 7888888999999988643 12212222334678999
Q ss_pred cCCCCEEEEecCCCcEEEEeCCCccccceee--eccceEEEEEEeCCCEEEEeeCCCeEEEEecC
Q 047325 252 SSSRSIVYCGSSDGLVNFWEREKQLSHGGVL--KGHKLAVLCLAAAGKLVFSGSADKTICVWRRD 314 (368)
Q Consensus 252 ~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~ 314 (368)
.++|.+++.|+.|+.+++|..+. ..+ ... ..|-.....+.|++++++.|+.||+|..|++-
T Consensus 231 f~NGEy~LiGGsdk~L~~fTR~G-vrL-GTvg~~D~WIWtV~~~PNsQ~v~~GCqDGTiACyNl~ 293 (1081)
T KOG1538|consen 231 FTNGEYILLGGSDKQLSLFTRDG-VRL-GTVGEQDSWIWTVQAKPNSQYVVVGCQDGTIACYNLI 293 (1081)
T ss_pred ccCCcEEEEccCCCceEEEeecC-eEE-eeccccceeEEEEEEccCCceEEEEEccCeeehhhhH
Confidence 99999999999999999997553 332 222 23445557778999999999999999999853
No 174
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.86 E-value=1.4e-19 Score=136.93 Aligned_cols=244 Identities=18% Similarity=0.247 Sum_probs=181.0
Q ss_pred eeccCcCCcEEEEEecCC---EEEEccCC-------CcEEEEcCCcceec-----------cc-CCCCCeeEEEEe--CC
Q 047325 38 GSLVREEGHIYSLAASKD---LLYTGSDS-------KNIRVWKNLKEFCG-----------FK-ASSGLVKAIVIS--GE 93 (368)
Q Consensus 38 ~~~~~h~~~i~~~~~~~~---~l~s~~~d-------g~i~iw~~~~~~~~-----------~~-~~~~~v~~~~~~--~~ 93 (368)
+.|..|.+.|+.++-+|. +|+|+..+ -.+.||.+.+.+.. +. .+-+.|.|+.|. +.
T Consensus 57 kvf~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~~Ldteavg~i~cvew~Pns~ 136 (370)
T KOG1007|consen 57 KVFFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVASLDTEAVGKINCVEWEPNSD 136 (370)
T ss_pred hhhhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccccchhhHhhcCCHHHhCceeeEEEcCCCC
Confidence 467788899999987644 77776542 24778987654332 22 455689999998 55
Q ss_pred EEEEEeCCCeEEEEeecCCCccccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcC--CCCEEEE
Q 047325 94 KIFTGHQDGKIRVWKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQ--DCGLLYT 171 (368)
Q Consensus 94 ~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~ 171 (368)
.+++-. |..|.+|+++............. -.++....++-+|+| +++.+++
T Consensus 137 klasm~-dn~i~l~~l~ess~~vaev~ss~--------------------------s~e~~~~ftsg~WspHHdgnqv~t 189 (370)
T KOG1007|consen 137 KLASMD-DNNIVLWSLDESSKIVAEVLSSE--------------------------SAEMRHSFTSGAWSPHHDGNQVAT 189 (370)
T ss_pred eeEEec-cCceEEEEcccCcchheeecccc--------------------------cccccceecccccCCCCccceEEE
Confidence 666655 88999999988765321111000 011556678889998 7778877
Q ss_pred EeCCCcEEEEEccCCeEEEEee-cCCCceEEEEeCCCC--eEEEEcCCCeEEEEEcCCCCCCcccccceeeccccccEEE
Q 047325 172 ASWDRTFKVWRISDSKCLESVS-AHDDAVNSVVSSSEG--LIFTGSADGTVKVWKREQHGKGTKHSLAQTLLKQECAVTA 248 (368)
Q Consensus 172 ~~~d~~i~iwd~~~~~~~~~~~-~~~~~v~~~~~~~~~--~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~i~~ 248 (368)
.+ |+++..||+++.+....++ +|...|..+.|+|+. +|++++.||.|++||.|... .++..+.+|...+.+
T Consensus 190 t~-d~tl~~~D~RT~~~~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk-----~pv~el~~HsHWvW~ 263 (370)
T KOG1007|consen 190 TS-DSTLQFWDLRTMKKNNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTK-----FPVQELPGHSHWVWA 263 (370)
T ss_pred eC-CCcEEEEEccchhhhcchhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCC-----ccccccCCCceEEEE
Confidence 65 7999999999887766664 688899999999998 89999999999999999654 378889999999999
Q ss_pred EEEcCC-CCEEEEecCCCcEEEEeCCCc------------------------ccc----ceeeeccceEEEEEEeC---C
Q 047325 249 LVVSSS-RSIVYCGSSDGLVNFWEREKQ------------------------LSH----GGVLKGHKLAVLCLAAA---G 296 (368)
Q Consensus 249 ~~~~~~-~~~l~~~~~dg~i~i~d~~~~------------------------~~~----~~~~~~~~~~~~~~~~~---~ 296 (368)
+.|+|. .+++++|+.|..|.+|-...- +.+ ...+..|...|+++.+. .
T Consensus 264 VRfn~~hdqLiLs~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehEDSVY~~aWSsadP 343 (370)
T KOG1007|consen 264 VRFNPEHDQLILSGGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHEDSVYALAWSSADP 343 (370)
T ss_pred EEecCccceEEEecCCCceeEEEeccccccccccccccccccCcchhhHHhcccccccccccccccccceEEEeeccCCC
Confidence 999995 457889999999999864210 001 12456788889888874 5
Q ss_pred CEEEEeeCCCeEEEEecC
Q 047325 297 KLVFSGSADKTICVWRRD 314 (368)
Q Consensus 297 ~~l~~~~~dg~i~iw~~~ 314 (368)
=.+++-+.||++.|=.+.
T Consensus 344 WiFASLSYDGRviIs~V~ 361 (370)
T KOG1007|consen 344 WIFASLSYDGRVIISSVP 361 (370)
T ss_pred eeEEEeccCceEEeecCC
Confidence 578888999999887554
No 175
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.86 E-value=2e-19 Score=158.12 Aligned_cols=268 Identities=20% Similarity=0.298 Sum_probs=176.7
Q ss_pred CCEEEEccCCCcEEEEcCCcc--eecccC---CCCCeeEEEEe----CCEEEEEeCCCeEEEEeecCCC-ccccccCCcc
Q 047325 54 KDLLYTGSDSKNIRVWKNLKE--FCGFKA---SSGLVKAIVIS----GEKIFTGHQDGKIRVWKISPKN-QSVHKRAGTL 123 (368)
Q Consensus 54 ~~~l~s~~~dg~i~iw~~~~~--~~~~~~---~~~~v~~~~~~----~~~l~s~~~dg~i~vw~~~~~~-~~~~~~~~~~ 123 (368)
.+.++++...-.|++||.++. +..|.. ....|+.+.+- ...+++|+.||.|+||+--... ........
T Consensus 1076 ~p~i~~ad~r~~i~vwd~e~~~~l~~F~n~~~~~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~~~~~~eLVTa-- 1153 (1387)
T KOG1517|consen 1076 EPQIAAADDRERIRVWDWEKGRLLNGFDNGAFPDTRVSDLELINEQDDALLLTASSDGVIRIWKDYADKWKKPELVTA-- 1153 (1387)
T ss_pred CceeEEcCCcceEEEEecccCceeccccCCCCCCCccceeeeecccchhheeeeccCceEEEecccccccCCceeEEe--
Confidence 347888887789999998744 333432 34568888875 4579999999999999754332 10000000
Q ss_pred ccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcCCCCEEEEEeCCCcEEEEEccCCeEEEEeecC-CCceEEE
Q 047325 124 PTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCGLLYTASWDRTFKVWRISDSKCLESVSAH-DDAVNSV 202 (368)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~-~~~v~~~ 202 (368)
...-.....+-.+.-.-+.|.....+|+++|.-..|+|||....+....+... +..++++
T Consensus 1154 -------------------w~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd~r~IRIWDa~~E~~~~diP~~s~t~vTaL 1214 (1387)
T KOG1517|consen 1154 -------------------WSSLSDQLPGARGTGLVVDWQQQSGHLLVTGDVRSIRIWDAHKEQVVADIPYGSSTLVTAL 1214 (1387)
T ss_pred -------------------eccccccCccCCCCCeeeehhhhCCeEEecCCeeEEEEEecccceeEeecccCCCccceee
Confidence 00000001111122244678776667777777789999999988888777643 3456666
Q ss_pred EeCC-CC-eEEEEcCCCeEEEEEcCCCCCCcccccceeecccccc--EEEEEEcCCCC-EEEEecCCCcEEEEeCCCc-c
Q 047325 203 VSSS-EG-LIFTGSADGTVKVWKREQHGKGTKHSLAQTLLKQECA--VTALVVSSSRS-IVYCGSSDGLVNFWEREKQ-L 276 (368)
Q Consensus 203 ~~~~-~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~--i~~~~~~~~~~-~l~~~~~dg~i~i~d~~~~-~ 276 (368)
.-.- .| .+++|..||.|++||.|.... ...+.....|... |..+.+.++|- .|++|+.||.|++||++.. .
T Consensus 1215 S~~~~~gn~i~AGfaDGsvRvyD~R~a~~---ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~ 1291 (1387)
T KOG1517|consen 1215 SADLVHGNIIAAGFADGSVRVYDRRMAPP---DSLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSK 1291 (1387)
T ss_pred cccccCCceEEEeecCCceEEeecccCCc---cccceeecccCCcccceeEEeecCCCcceeeeccCCeEEEEecccCcc
Confidence 4432 33 999999999999999997633 2345556667766 99999988665 4999999999999999974 2
Q ss_pred ccceeeecc-----ceEEEEEEeCCCEEEEeeCCCeEEEEecCCCceeeeEeee----ccccCeeEEEEecCCeeeecC
Q 047325 277 SHGGVLKGH-----KLAVLCLAAAGKLVFSGSADKTICVWRRDGAIHTCLSVLT----GHTGPVKCLAVEEDRDSSSST 346 (368)
Q Consensus 277 ~~~~~~~~~-----~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~----~h~~~v~~l~~~~~~~~~~~~ 346 (368)
........| ....+.++.+...+|+|+. +.|+||++.......++... ...+.+.+++|+|-...+|.+
T Consensus 1292 e~~~~iv~~~~yGs~lTal~VH~hapiiAsGs~-q~ikIy~~~G~~l~~~k~n~~F~~q~~gs~scL~FHP~~~llAaG 1369 (1387)
T KOG1517|consen 1292 ETFLTIVAHWEYGSALTALTVHEHAPIIASGSA-QLIKIYSLSGEQLNIIKYNPGFMGQRIGSVSCLAFHPHRLLLAAG 1369 (1387)
T ss_pred cccceeeeccccCccceeeeeccCCCeeeecCc-ceEEEEecChhhhcccccCcccccCcCCCcceeeecchhHhhhhc
Confidence 211122222 2344566678899999998 99999998765333332222 123568999999999854444
No 176
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.86 E-value=4.5e-21 Score=164.33 Aligned_cols=279 Identities=22% Similarity=0.304 Sum_probs=204.9
Q ss_pred CceeeeccCcCCcEEEEEec--CCEEEEccCCCcEEEEcCCcc--eecccCCCCCeeEEEEe--CCEEEEEeCCCeEEEE
Q 047325 34 NGLIGSLVREEGHIYSLAAS--KDLLYTGSDSKNIRVWKNLKE--FCGFKASSGLVKAIVIS--GEKIFTGHQDGKIRVW 107 (368)
Q Consensus 34 ~~~~~~~~~h~~~i~~~~~~--~~~l~s~~~dg~i~iw~~~~~--~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~vw 107 (368)
-+.++.+.+|..+|+|..|+ +.++++|+.|..++||..++. +....+|.+.|+.++.+ +..+++++.|..|++|
T Consensus 180 mk~ikrLlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~lAs~rGhs~ditdlavs~~n~~iaaaS~D~vIrvW 259 (1113)
T KOG0644|consen 180 MKNIKRLLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETARCLASCRGHSGDITDLAVSSNNTMIAAASNDKVIRVW 259 (1113)
T ss_pred HHHHHHHHhhhhheeeeeeccccceEeecCccceeeeeeccchhhhccCCCCccccchhccchhhhhhhhcccCceEEEE
Confidence 35567789999999999997 559999999999999997754 55788999999999998 5578999999999999
Q ss_pred eecCCCccccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcCCCCEEEEEeCCCcEEEEEccCCe
Q 047325 108 KISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCGLLYTASWDRTFKVWRISDSK 187 (368)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~ 187 (368)
.+..+..+. ++.||++.|++++|+|-. +.+.||++++||.+ ..
T Consensus 260 rl~~~~pvs--------------------------------vLrghtgavtaiafsP~~----sss~dgt~~~wd~r-~~ 302 (1113)
T KOG0644|consen 260 RLPDGAPVS--------------------------------VLRGHTGAVTAIAFSPRA----SSSDDGTCRIWDAR-LE 302 (1113)
T ss_pred ecCCCchHH--------------------------------HHhccccceeeeccCccc----cCCCCCceEecccc-cc
Confidence 999886433 445699999999999954 67889999999987 22
Q ss_pred EEEEe----ec-CCCceEEEEeCCCC-eEEEEcCCCeEEEEEcCCCCCCcccccceeeccccccEEEEEEcCC-CCEEEE
Q 047325 188 CLESV----SA-HDDAVNSVVSSSEG-LIFTGSADGTVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSSS-RSIVYC 260 (368)
Q Consensus 188 ~~~~~----~~-~~~~v~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~l~~ 260 (368)
++... +. ....+.++.+...+ .+++++.|+.-..|...... .+...+.-+..+.+ ..+.++
T Consensus 303 ~~~y~prp~~~~~~~~~~s~~~~~~~~~f~Tgs~d~ea~n~e~~~l~------------~~~~~lif~t~ssd~~~~~~~ 370 (1113)
T KOG0644|consen 303 PRIYVPRPLKFTEKDLVDSILFENNGDRFLTGSRDGEARNHEFEQLA------------WRSNLLIFVTRSSDLSSIVVT 370 (1113)
T ss_pred ccccCCCCCCcccccceeeeeccccccccccccCCcccccchhhHhh------------hhccceEEEecccccccccee
Confidence 22111 11 12345666676666 89999999999888775321 11111111112212 246666
Q ss_pred ecCCCcEEEEeCCCccccceeeeccc--eEEEEEEe-CCCEEEEeeCCCeEEEEecCCCceeeeEeeeccccCeeEEEEe
Q 047325 261 GSSDGLVNFWEREKQLSHGGVLKGHK--LAVLCLAA-AGKLVFSGSADKTICVWRRDGAIHTCLSVLTGHTGPVKCLAVE 337 (368)
Q Consensus 261 ~~~dg~i~i~d~~~~~~~~~~~~~~~--~~~~~~~~-~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~l~~~ 337 (368)
+-.+-.+.+|++-++... ....+|. ..++.++| +.....+++.||...|||+-.+....... .+| ..+.+-+|+
T Consensus 371 ar~~~~~~vwnl~~g~l~-H~l~ghsd~~yvLd~Hpfn~ri~msag~dgst~iwdi~eg~pik~y~-~gh-~kl~d~kFS 447 (1113)
T KOG0644|consen 371 ARNDHRLCVWNLYTGQLL-HNLMGHSDEVYVLDVHPFNPRIAMSAGYDGSTIIWDIWEGIPIKHYF-IGH-GKLVDGKFS 447 (1113)
T ss_pred eeeeeEeeeeecccchhh-hhhcccccceeeeeecCCCcHhhhhccCCCceEeeecccCCcceeee-ccc-ceeeccccC
Confidence 777788899999887554 3444454 45566666 66777899999999999997764443333 444 456677999
Q ss_pred cCCeeeecCCcceEEEEEeeCCccccc
Q 047325 338 EDRDSSSSTSSCAQRWIVYSGSLDKSD 364 (368)
Q Consensus 338 ~~~~~~~~~~~~~~~w~l~sg~~D~~v 364 (368)
+||..++..+.-++++.+-+|..+-..
T Consensus 448 qdgts~~lsd~hgql~i~g~gqs~s~k 474 (1113)
T KOG0644|consen 448 QDGTSIALSDDHGQLYILGTGQSKSQK 474 (1113)
T ss_pred CCCceEecCCCCCceEEeccCCCcccc
Confidence 999999999999999888888765544
No 177
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.86 E-value=5.8e-20 Score=150.65 Aligned_cols=220 Identities=15% Similarity=0.245 Sum_probs=155.0
Q ss_pred cCCCceeeeccCcCCcEEEEEec--CCEEEEccCCCcEEEEcCCcc--e-ecccCCCCCeeEEEEe----CCEEEEEeCC
Q 047325 31 LPQNGLIGSLVREEGHIYSLAAS--KDLLYTGSDSKNIRVWKNLKE--F-CGFKASSGLVKAIVIS----GEKIFTGHQD 101 (368)
Q Consensus 31 ~~~~~~~~~~~~h~~~i~~~~~~--~~~l~s~~~dg~i~iw~~~~~--~-~~~~~~~~~v~~~~~~----~~~l~s~~~d 101 (368)
+..-.+-+.|.||++.|+||+|+ |++|++||.|-.+.|||.... + ..-.+|.+.|.++.|- ++.+++|..|
T Consensus 37 lrrL~lE~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgD 116 (758)
T KOG1310|consen 37 LRRLDLEAELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGD 116 (758)
T ss_pred HhhcchhhhhccccceecceeecCCCCEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCc
Confidence 34445567799999999999997 669999999999999998632 2 2346899999999996 6689999999
Q ss_pred CeEEEEeecCCCccccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcCCC-CEEEEEeCCCcEEE
Q 047325 102 GKIRVWKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDC-GLLYTASWDRTFKV 180 (368)
Q Consensus 102 g~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~i 180 (368)
..|+++|+...+....-.. .......+..|...|..++..|++ +.+.+++.||+|+-
T Consensus 117 k~i~lfdl~~~~~~~~d~~----------------------~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQ 174 (758)
T KOG1310|consen 117 KLIKLFDLDSSKEGGMDHG----------------------MEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQ 174 (758)
T ss_pred ceEEEEecccccccccccC----------------------ccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceee
Confidence 9999999986432111100 011233455599999999999988 78999999999999
Q ss_pred EEccCCeEE----------EEeecCCCceEEEEeCCCC--eEEEEcCCCeEEEEEcCCCCC-----Cc-ccc------cc
Q 047325 181 WRISDSKCL----------ESVSAHDDAVNSVVSSSEG--LIFTGSADGTVKVWKREQHGK-----GT-KHS------LA 236 (368)
Q Consensus 181 wd~~~~~~~----------~~~~~~~~~v~~~~~~~~~--~l~~~~~dg~i~i~d~~~~~~-----~~-~~~------~~ 236 (368)
+|++....- ..+...--...|+..+|.. +|++|+.|-..++||.|..-+ +. ... ++
T Consensus 175 yDiREph~c~p~~~~~~~l~ny~~~lielk~ltisp~rp~~laVGgsdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv 254 (758)
T KOG1310|consen 175 YDIREPHVCNPDEDCPSILVNYNPQLIELKCLTISPSRPYYLAVGGSDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCV 254 (758)
T ss_pred ecccCCccCCccccccHHHHHhchhhheeeeeeecCCCCceEEecCCCchhhhhhhhhhccCCCCCccccCCCCcccchh
Confidence 999863211 1111122356788999987 999999999999999543211 00 000 11
Q ss_pred eeec-cc-----------cccEEEEEEcCCCCEEEEecCCCcEEEEeC
Q 047325 237 QTLL-KQ-----------ECAVTALVVSSSRSIVYCGSSDGLVNFWER 272 (368)
Q Consensus 237 ~~~~-~~-----------~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~ 272 (368)
..+. +| ...++-+.|+|+|.-|+..-....|+++|+
T Consensus 255 ~yf~p~hlkn~~gn~~~~~~~~t~vtfnpNGtElLvs~~gEhVYlfdv 302 (758)
T KOG1310|consen 255 RYFSPGHLKNSQGNLDRYITCCTYVTFNPNGTELLVSWGGEHVYLFDV 302 (758)
T ss_pred heecCccccCcccccccceeeeEEEEECCCCcEEEEeeCCeEEEEEee
Confidence 1111 11 122566789999987777666667888875
No 178
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.85 E-value=2.5e-20 Score=153.06 Aligned_cols=269 Identities=17% Similarity=0.238 Sum_probs=183.8
Q ss_pred EEEEccCCCcEEEE--cCCc----------------------ceecccCCCCCeeEEEEe--CCEEEEEeCCCeEEEEee
Q 047325 56 LLYTGSDSKNIRVW--KNLK----------------------EFCGFKASSGLVKAIVIS--GEKIFTGHQDGKIRVWKI 109 (368)
Q Consensus 56 ~l~s~~~dg~i~iw--~~~~----------------------~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~vw~~ 109 (368)
+.++...|...++| ++.. ...++..|...|.++.|. ...|++++.||+|++|++
T Consensus 244 ~~~g~d~~l~~~l~~~tla~l~I~~~~dd~~~~k~a~~k~w~ik~tl~s~~d~ir~l~~~~sep~lit~sed~~lk~WnL 323 (577)
T KOG0642|consen 244 ISVGADEDLMSRLGLGTLAGLTIEDEFDDLSDLKKAFTKKWNIKFTLRSHDDCIRALAFHPSEPVLITASEDGTLKLWNL 323 (577)
T ss_pred ccccCchHHHHhhcccchhcccccccccchhhhhhhhheecceeeeeecchhhhhhhhcCCCCCeEEEeccccchhhhhh
Confidence 66777777777777 3210 011345677788888887 668999999999999999
Q ss_pred cCCCccccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcCCCCEEEEEeCCCcEEEEEccCC---
Q 047325 110 SPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCGLLYTASWDRTFKVWRISDS--- 186 (368)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~--- 186 (368)
+........ ...+...|.+|.++|.|+++.+++..+++|+.||+|+.|++...
T Consensus 324 qk~~~s~~~------------------------~~epi~tfraH~gPVl~v~v~~n~~~~ysgg~Dg~I~~w~~p~n~dp 379 (577)
T KOG0642|consen 324 QKAKKSAEK------------------------DVEPILTFRAHEGPVLCVVVPSNGEHCYSGGIDGTIRCWNLPPNQDP 379 (577)
T ss_pred cccCCcccc------------------------ceeeeEEEecccCceEEEEecCCceEEEeeccCceeeeeccCCCCCc
Confidence 431111000 11234567789999999999999999999999999999966421
Q ss_pred -------eEEEEeecCCCceEEEEeCCCC-eEEEEcCCCeEEEEEcCCCCCCcccccceeeccccccEEEEEEcCCC-CE
Q 047325 187 -------KCLESVSAHDDAVNSVVSSSEG-LIFTGSADGTVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSSSR-SI 257 (368)
Q Consensus 187 -------~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~ 257 (368)
.....+.+|...++.+++++.. .|++++.||+++.|+...... +........+...++.+-... .+
T Consensus 380 ~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~~~~~~-----~~f~~~~e~g~Plsvd~~ss~~a~ 454 (577)
T KOG0642|consen 380 DDSYDPSVLSGTLLGHTDAVWLLALSSTKDRLLSCSSDGTVRLWEPTEESP-----CTFGEPKEHGYPLSVDRTSSRPAH 454 (577)
T ss_pred ccccCcchhccceeccccceeeeeecccccceeeecCCceEEeeccCCcCc-----cccCCccccCCcceEeeccchhHh
Confidence 2345678999999999999887 999999999999999875422 112222222334455553322 22
Q ss_pred EEEecCCCcEEEEeCCCccccceee--------eccceEEEEEEeCCCEEEEeeCCCeEEEEecCCCceeeeEeeecccc
Q 047325 258 VYCGSSDGLVNFWEREKQLSHGGVL--------KGHKLAVLCLAAAGKLVFSGSADKTICVWRRDGAIHTCLSVLTGHTG 329 (368)
Q Consensus 258 l~~~~~dg~i~i~d~~~~~~~~~~~--------~~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~ 329 (368)
.++...-+.-.+++++......... .......+...|...+.+++..|+.|+++|..++ ..+.....|..
T Consensus 455 ~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~hed~~Ir~~dn~~~--~~l~s~~a~~~ 532 (577)
T KOG0642|consen 455 SLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTADITFTAHEDRSIRFFDNKTG--KILHSMVAHKD 532 (577)
T ss_pred hhhhcccccccchhhhhhhheeeccccCCCcccccCccceEEecCCCCeeEecccCCceeccccccc--ccchheeeccc
Confidence 2222222333333333222111000 0011222344567889999999999999987776 78888889999
Q ss_pred CeeEEEEecCCeeeecCCcceEEEEEeeCCcccccccC
Q 047325 330 PVKCLAVEEDRDSSSSTSSCAQRWIVYSGSLDKSDDDV 367 (368)
Q Consensus 330 ~v~~l~~~~~~~~~~~~~~~~~~w~l~sg~~D~~v~i~ 367 (368)
.++++++.|+|. +|.+|+.|+.|++|
T Consensus 533 svtslai~~ng~------------~l~s~s~d~sv~l~ 558 (577)
T KOG0642|consen 533 SVTSLAIDPNGP------------YLMSGSHDGSVRLW 558 (577)
T ss_pred eecceeecCCCc------------eEEeecCCceeehh
Confidence 999999999999 78888888888877
No 179
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.85 E-value=1.6e-17 Score=145.32 Aligned_cols=260 Identities=30% Similarity=0.511 Sum_probs=194.2
Q ss_pred eccCcCCcEEEEEecCC--EEEEccCCCcEEEEcCCcc---eecccCCC-CCeeEEEE-e--CC-EEEEEeC-CCeEEEE
Q 047325 39 SLVREEGHIYSLAASKD--LLYTGSDSKNIRVWKNLKE---FCGFKASS-GLVKAIVI-S--GE-KIFTGHQ-DGKIRVW 107 (368)
Q Consensus 39 ~~~~h~~~i~~~~~~~~--~l~s~~~dg~i~iw~~~~~---~~~~~~~~-~~v~~~~~-~--~~-~l~s~~~-dg~i~vw 107 (368)
.+..|...|.++.+... .++.++.|+.+.+|+.... ...+..+. ..+..+.+ . +. .++..+. |+.+.+|
T Consensus 60 ~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~ 139 (466)
T COG2319 60 LLRGHEDSITSIAFSPDGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALSSPDGNSILLASSSLDGTVKLW 139 (466)
T ss_pred eeeeccceEEEEEECCCCcEEEEecCCCcEEEEEcCCCceeEEEEeccCCCceeeEEEECCCcceEEeccCCCCccEEEE
Confidence 56789999999999744 8888889999999997754 44455533 36666666 3 44 4555444 9999999
Q ss_pred eecC-CCccccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcCCCCEEEEEeC-CCcEEEEEccC
Q 047325 108 KISP-KNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCGLLYTASW-DRTFKVWRISD 185 (368)
Q Consensus 108 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d~~i~iwd~~~ 185 (368)
+... .. ....+..|...|..++|+|++..+++++. |+.+++|++..
T Consensus 140 ~~~~~~~--------------------------------~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (466)
T COG2319 140 DLSTPGK--------------------------------LIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRT 187 (466)
T ss_pred EecCCCe--------------------------------EEEEEecCcccEEEEEECCCCCEEEecCCCCCceEEEEcCC
Confidence 9987 22 12233448999999999999998888885 99999999999
Q ss_pred CeEEEEeecCCCceEEEEeCCCC-eEEEE-cCCCeEEEEEcCCCCCCcccccce-eeccccccEEEEEEcCCCCEEEEec
Q 047325 186 SKCLESVSAHDDAVNSVVSSSEG-LIFTG-SADGTVKVWKREQHGKGTKHSLAQ-TLLKQECAVTALVVSSSRSIVYCGS 262 (368)
Q Consensus 186 ~~~~~~~~~~~~~v~~~~~~~~~-~l~~~-~~dg~i~i~d~~~~~~~~~~~~~~-~~~~~~~~i~~~~~~~~~~~l~~~~ 262 (368)
+..+..+..|...+.+++++|++ .++++ +.|+.|++||.+.. .... .+..|.... ...|+|++..+++++
T Consensus 188 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~wd~~~~------~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 260 (466)
T COG2319 188 GKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTG------KLLRSTLSGHSDSV-VSSFSPDGSLLASGS 260 (466)
T ss_pred CceEEeeccCCCceEEEEEcCCcceEEEEecCCCcEEEEECCCC------cEEeeecCCCCcce-eEeECCCCCEEEEec
Confidence 88999999999999999999988 35554 89999999987733 1233 456666654 338999998999999
Q ss_pred CCCcEEEEeCCCccccceeeeccceEEEE--EEeCCCEEEEeeCCCeEEEEecCCCceeeeEeeeccccCeeEEEEe
Q 047325 263 SDGLVNFWEREKQLSHGGVLKGHKLAVLC--LAAAGKLVFSGSADKTICVWRRDGAIHTCLSVLTGHTGPVKCLAVE 337 (368)
Q Consensus 263 ~dg~i~i~d~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~l~~~ 337 (368)
.|+.+++|+.+...........|...+.+ +.|++..+++++.|+.+++|+..............|...+..+.|.
T Consensus 261 ~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 337 (466)
T COG2319 261 SDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSFS 337 (466)
T ss_pred CCCcEEEeeecCCCcEEEEEecCCccEEEEEECCCCCEEEEeeCCCcEEEEEcCCCceEEEeeecccCCceEEEEEC
Confidence 99999999998655422223566666654 4456788888999999999987765322222223788889999994
No 180
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.84 E-value=1.2e-18 Score=149.64 Aligned_cols=267 Identities=13% Similarity=0.106 Sum_probs=189.0
Q ss_pred CCcEEEEcCCccee--cccCCCCCeeEEEEe---CCEEEEEeCCCeEEEEeecCCCccccccCCccccceeeeeccCCCC
Q 047325 63 SKNIRVWKNLKEFC--GFKASSGLVKAIVIS---GEKIFTGHQDGKIRVWKISPKNQSVHKRAGTLPTLKDIFKSSIKPS 137 (368)
Q Consensus 63 dg~i~iw~~~~~~~--~~~~~~~~v~~~~~~---~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (368)
++.+.+|++..+.. ..-.-...|.++.|+ ++.++.|+.+|.|.+||+..+..........
T Consensus 221 ~~~~~vW~~~~p~~Pe~~~~~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~--------------- 285 (555)
T KOG1587|consen 221 DGVLLVWSLKNPNTPELVLESPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSA--------------- 285 (555)
T ss_pred CceEEEEecCCCCCceEEEecCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCccccc---------------
Confidence 34799999875522 122346678999987 7899999999999999999876532111110
Q ss_pred ceeEecccceeeeeecCCCEeEEEEcCCC--CEEEEEeCCCcEEEEEccCCeE------EEEee------cCCCceEEEE
Q 047325 138 NYIEVRRHRTALWIRHSDAVSCMSLDQDC--GLLYTASWDRTFKVWRISDSKC------LESVS------AHDDAVNSVV 203 (368)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~--~~l~~~~~d~~i~iwd~~~~~~------~~~~~------~~~~~v~~~~ 203 (368)
....|..+++.+.|..+. .-|++++.||.|..|+++.-.. ..... .....++++.
T Consensus 286 -----------~~~sh~~~v~~vvW~~~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~ 354 (555)
T KOG1587|consen 286 -----------LEVSHSEPVTAVVWLQNEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLK 354 (555)
T ss_pred -----------ccccCCcCeEEEEEeccCCCCceEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEe
Confidence 111289999999997644 4499999999999998764322 11111 1234678899
Q ss_pred eCCCC--eEEEEcCCCeEEEEEcCCCCCC--cccccceeeccccccEEEEEEcCCCCEEEEecCCCcEEEEeCCCccccc
Q 047325 204 SSSEG--LIFTGSADGTVKVWKREQHGKG--TKHSLAQTLLKQECAVTALVVSSSRSIVYCGSSDGLVNFWEREKQLSHG 279 (368)
Q Consensus 204 ~~~~~--~l~~~~~dg~i~i~d~~~~~~~--~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~ 279 (368)
|.+.. .+++|+.+|.|.--+....... ...+.......|.++|.++.++|-+..++..+.|.+++||.......+.
T Consensus 355 F~~~~p~~FiVGTe~G~v~~~~r~g~~~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~gDW~vriWs~~~~~~Pl 434 (555)
T KOG1587|consen 355 FEPTDPNHFIVGTEEGKVYKGCRKGYTPAPEVSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVGDWTVRIWSEDVIASPL 434 (555)
T ss_pred eccCCCceEEEEcCCcEEEEEeccCCcccccccccccccccccCcceEeeecCCCccceeeeeccceeEeccccCCCCcc
Confidence 98877 8999999999987444322111 1112344566788999999999976655555559999999987445555
Q ss_pred eeeeccceEEEEEEeC---CCEEEEeeCCCeEEEEecCCCceeeeEeeeccccCeeEEEEecCCeeeecCCcceEEEEE
Q 047325 280 GVLKGHKLAVLCLAAA---GKLVFSGSADKTICVWRRDGAIHTCLSVLTGHTGPVKCLAVEEDRDSSSSTSSCAQRWIV 355 (368)
Q Consensus 280 ~~~~~~~~~~~~~~~~---~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~w~l 355 (368)
..+..+...+++++|. ...++++..||.|.+||+......++.+...+....+.+.|+++|+.++.++..+.++.+
T Consensus 435 ~~~~~~~~~v~~vaWSptrpavF~~~d~~G~l~iWDLl~~~~~Pv~s~~~~~~~l~~~~~s~~g~~lavGd~~G~~~~~ 513 (555)
T KOG1587|consen 435 LSLDSSPDYVTDVAWSPTRPAVFATVDGDGNLDIWDLLQDDEEPVLSQKVCSPALTRVRWSPNGKLLAVGDANGTTHIL 513 (555)
T ss_pred hhhhhccceeeeeEEcCcCceEEEEEcCCCceehhhhhccccCCcccccccccccceeecCCCCcEEEEecCCCcEEEE
Confidence 5666666667555553 568899999999999999877667777777777788889999999987777766644433
No 181
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.84 E-value=5.4e-20 Score=153.45 Aligned_cols=203 Identities=15% Similarity=0.206 Sum_probs=154.7
Q ss_pred eEEEEeCCEEEE--EeCCCeEEEEeecCCCccccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEc
Q 047325 86 KAIVISGEKIFT--GHQDGKIRVWKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLD 163 (368)
Q Consensus 86 ~~~~~~~~~l~s--~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 163 (368)
..++-+..+++. ++..|.|.||+++............. -....|+.+.|+
T Consensus 585 nGfcan~~rvAVPL~g~gG~iai~el~~PGrLPDgv~p~l----------------------------~Ngt~vtDl~Wd 636 (1012)
T KOG1445|consen 585 NGFCANNKRVAVPLAGSGGVIAIYELNEPGRLPDGVMPGL----------------------------FNGTLVTDLHWD 636 (1012)
T ss_pred CceeeccceEEEEecCCCceEEEEEcCCCCCCCccccccc----------------------------ccCceeeecccC
Confidence 333444444443 45578999999987654332222111 045679999999
Q ss_pred C-CCCEEEEEeCCCcEEEEEccCC-------eEEEEeecCCCceEEEEeCCCC--eEEEEcCCCeEEEEEcCCCCCCccc
Q 047325 164 Q-DCGLLYTASWDRTFKVWRISDS-------KCLESVSAHDDAVNSVVSSSEG--LIFTGSADGTVKVWKREQHGKGTKH 233 (368)
Q Consensus 164 ~-~~~~l~~~~~d~~i~iwd~~~~-------~~~~~~~~~~~~v~~~~~~~~~--~l~~~~~dg~i~i~d~~~~~~~~~~ 233 (368)
| |...|++++.||.|++|.+..+ .+...+..|...|+++.|+|-. .|++++.|-+|++||++..
T Consensus 637 PFD~~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl~~~------ 710 (1012)
T KOG1445|consen 637 PFDDERLAVATDDGQINLWRLTANGLPENEMTPEKILTIHGEKITSLRFHPLAADVLAVASYDSTIELWDLANA------ 710 (1012)
T ss_pred CCChHHeeecccCceEEEEEeccCCCCcccCCcceeeecccceEEEEEecchhhhHhhhhhccceeeeeehhhh------
Confidence 9 7789999999999999998653 4567788999999999999976 8999999999999999876
Q ss_pred ccceeeccccccEEEEEEcCCCCEEEEecCCCcEEEEeCCCccccceeee---ccceEEEEEEeCCCEEEEeeCC----C
Q 047325 234 SLAQTLLKQECAVTALVVSSSRSIVYCGSSDGLVNFWEREKQLSHGGVLK---GHKLAVLCLAAAGKLVFSGSAD----K 306 (368)
Q Consensus 234 ~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~---~~~~~~~~~~~~~~~l~~~~~d----g 306 (368)
.....+.+|.+.|..++|+|+|+.+++.+.||+|++|..++.+.....-. +.....+.+..+|+++++.+.| .
T Consensus 711 ~~~~~l~gHtdqIf~~AWSpdGr~~AtVcKDg~~rVy~Prs~e~pv~Eg~gpvgtRgARi~wacdgr~viv~Gfdk~SeR 790 (1012)
T KOG1445|consen 711 KLYSRLVGHTDQIFGIAWSPDGRRIATVCKDGTLRVYEPRSREQPVYEGKGPVGTRGARILWACDGRIVIVVGFDKSSER 790 (1012)
T ss_pred hhhheeccCcCceeEEEECCCCcceeeeecCceEEEeCCCCCCCccccCCCCccCcceeEEEEecCcEEEEecccccchh
Confidence 34667889999999999999999999999999999999988766644433 2344556788899998887765 4
Q ss_pred eEEEEecCCCceeeeE
Q 047325 307 TICVWRRDGAIHTCLS 322 (368)
Q Consensus 307 ~i~iw~~~~~~~~~~~ 322 (368)
.|.+||..+-...++.
T Consensus 791 Qv~~Y~Aq~l~~~pl~ 806 (1012)
T KOG1445|consen 791 QVQMYDAQTLDLRPLY 806 (1012)
T ss_pred hhhhhhhhhccCCcce
Confidence 5888876554333333
No 182
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.84 E-value=7.6e-18 Score=141.38 Aligned_cols=257 Identities=12% Similarity=0.202 Sum_probs=159.3
Q ss_pred EEEccCCCcEEEEcCCc-----ceecccCCCCCeeEEEEe--CCEEEEEe-CCCeEEEEeecCCCccccccCCcccccee
Q 047325 57 LYTGSDSKNIRVWKNLK-----EFCGFKASSGLVKAIVIS--GEKIFTGH-QDGKIRVWKISPKNQSVHKRAGTLPTLKD 128 (368)
Q Consensus 57 l~s~~~dg~i~iw~~~~-----~~~~~~~~~~~v~~~~~~--~~~l~s~~-~dg~i~vw~~~~~~~~~~~~~~~~~~~~~ 128 (368)
+++...|+.|++|++.. .+..+. +.+....+.++ +++|++++ .++.|.+|+++...........
T Consensus 5 y~~~~~~~~I~~~~~~~~g~l~~~~~~~-~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~------- 76 (330)
T PRK11028 5 YIASPESQQIHVWNLNHEGALTLLQVVD-VPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAES------- 76 (330)
T ss_pred EEEcCCCCCEEEEEECCCCceeeeeEEe-cCCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeee-------
Confidence 44557789999999852 122222 33456667776 77777664 5888999999732111000000
Q ss_pred eeeccCCCCceeEecccceeeeeecCCCEeEEEEcCCCCEEEEEeC-CCcEEEEEccC-C---eEEEEeecCCCceEEEE
Q 047325 129 IFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCGLLYTASW-DRTFKVWRISD-S---KCLESVSAHDDAVNSVV 203 (368)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d~~i~iwd~~~-~---~~~~~~~~~~~~v~~~~ 203 (368)
........++++|+++++++++. ++.|.+||+.+ + +.+..+. +.....+++
T Consensus 77 -----------------------~~~~~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~-~~~~~~~~~ 132 (330)
T PRK11028 77 -----------------------PLPGSPTHISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIE-GLEGCHSAN 132 (330)
T ss_pred -----------------------cCCCCceEEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeecc-CCCcccEeE
Confidence 02234567999999998888764 78999999964 2 2233332 223456788
Q ss_pred eCCCC-eE-EEEcCCCeEEEEEcCCCCCCccc-ccceeeccccccEEEEEEcCCCCEEEEecC-CCcEEEEeCCCc--cc
Q 047325 204 SSSEG-LI-FTGSADGTVKVWKREQHGKGTKH-SLAQTLLKQECAVTALVVSSSRSIVYCGSS-DGLVNFWEREKQ--LS 277 (368)
Q Consensus 204 ~~~~~-~l-~~~~~dg~i~i~d~~~~~~~~~~-~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-dg~i~i~d~~~~--~~ 277 (368)
++|++ ++ ++...++.|.+||++..+..... ...... ........+.|+|++++++++.. ++.|.+|+++.. ..
T Consensus 133 ~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~-~~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~ 211 (330)
T PRK11028 133 IDPDNRTLWVPCLKEDRIRLFTLSDDGHLVAQEPAEVTT-VEGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEI 211 (330)
T ss_pred eCCCCCEEEEeeCCCCEEEEEEECCCCcccccCCCceec-CCCCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCE
Confidence 99998 55 55556799999999763221100 000111 12234678999999999988876 899999998732 11
Q ss_pred -cceeeecc------c--eEEEEEEeCCCEEEEeeC-CCeEEEEecCCCc--eeeeEeeeccccCeeEEEEecCCeeeec
Q 047325 278 -HGGVLKGH------K--LAVLCLAAAGKLVFSGSA-DKTICVWRRDGAI--HTCLSVLTGHTGPVKCLAVEEDRDSSSS 345 (368)
Q Consensus 278 -~~~~~~~~------~--~~~~~~~~~~~~l~~~~~-dg~i~iw~~~~~~--~~~~~~~~~h~~~v~~l~~~~~~~~~~~ 345 (368)
........ . ..-+.++|++++++++.. ++.|.+|+++... .+.+..... ......+.++|+|+++.+
T Consensus 212 ~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~~~~~~~~~~~~~-~~~p~~~~~~~dg~~l~v 290 (330)
T PRK11028 212 ECVQTLDMMPADFSDTRWAADIHITPDGRHLYACDRTASLISVFSVSEDGSVLSFEGHQPT-ETQPRGFNIDHSGKYLIA 290 (330)
T ss_pred EEEEEEecCCCcCCCCccceeEEECCCCCEEEEecCCCCeEEEEEEeCCCCeEEEeEEEec-cccCCceEECCCCCEEEE
Confidence 11111111 1 112567899999998854 7899999986532 222332222 235668999999997665
Q ss_pred CC
Q 047325 346 TS 347 (368)
Q Consensus 346 ~~ 347 (368)
++
T Consensus 291 a~ 292 (330)
T PRK11028 291 AG 292 (330)
T ss_pred EE
Confidence 43
No 183
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.84 E-value=1.1e-18 Score=134.02 Aligned_cols=248 Identities=19% Similarity=0.255 Sum_probs=167.5
Q ss_pred eEEEEe--CCEEEEEeCCCeEEEEeecCCCccccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEc
Q 047325 86 KAIVIS--GEKIFTGHQDGKIRVWKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLD 163 (368)
Q Consensus 86 ~~~~~~--~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 163 (368)
..+.|+ |..|++-+.|..+++|++................ . ....-......|..-+|-
T Consensus 53 kgckWSPDGSciL~~sedn~l~~~nlP~dlys~~~~~~~~~~------------------~-~~~~r~~eg~tvydy~wY 113 (406)
T KOG2919|consen 53 KGCKWSPDGSCILSLSEDNCLNCWNLPFDLYSKKADGPLNFS------------------K-HLSYRYQEGETVYDYCWY 113 (406)
T ss_pred ccceeCCCCceEEeecccCeeeEEecChhhcccCCCCccccc------------------c-ceeEEeccCCEEEEEEee
Confidence 345666 8899999999999999986543211110000000 0 000001133455666664
Q ss_pred -------CCCCEEEEEeCCCcEEEEEccCCeEEEEeec--CC---CceEEEEeCCCC-eEEEEcCCCeEEEEEcCCCCC-
Q 047325 164 -------QDCGLLYTASWDRTFKVWRISDSKCLESVSA--HD---DAVNSVVSSSEG-LIFTGSADGTVKVWKREQHGK- 229 (368)
Q Consensus 164 -------~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~--~~---~~v~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~- 229 (368)
|+..++++.+.+.-|++||.-+|+....+.+ |. ....+++|+||| +|+ ++..+.|++||+...++
T Consensus 114 s~M~s~qP~t~l~a~ssr~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeqlf-aGykrcirvFdt~RpGr~ 192 (406)
T KOG2919|consen 114 SRMKSDQPSTNLFAVSSRDQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLF-AGYKRCIRVFDTSRPGRD 192 (406)
T ss_pred eccccCCCccceeeeccccCceeeeeccccccccchhhhhhHHhhhhheeEEecCCCCeEe-ecccceEEEeeccCCCCC
Confidence 5778999999999999999999998877764 22 245689999999 555 45678999999943332
Q ss_pred Ccccccce-eeccccccEEEEEEcCC-CCEEEEecCCCcEEEEeCCCccccceeeeccceEEEE--EEeCCCEEEEeeC-
Q 047325 230 GTKHSLAQ-TLLKQECAVTALVVSSS-RSIVYCGSSDGLVNFWEREKQLSHGGVLKGHKLAVLC--LAAAGKLVFSGSA- 304 (368)
Q Consensus 230 ~~~~~~~~-~~~~~~~~i~~~~~~~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~~~~~- 304 (368)
........ ...+..+.+.+++|+|. ...++.|+....+-||.-..+..+ ..+.+|...|+. +.++|+.|++|..
T Consensus 193 c~vy~t~~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl-~llggh~gGvThL~~~edGn~lfsGaRk 271 (406)
T KOG2919|consen 193 CPVYTTVTKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPL-QLLGGHGGGVTHLQWCEDGNKLFSGARK 271 (406)
T ss_pred CcchhhhhcccccccceeeeeeccCCCCcceeeecccceeeeEecCCCCce-eeecccCCCeeeEEeccCcCeecccccC
Confidence 11111111 13345678999999995 458999999988888876665444 677789888854 5568999999985
Q ss_pred CCeEEEEecCCCceeeeEeeecccc-CeeEEEE--ecCCeeeecCCcceEEEEEeeCCcccccccC
Q 047325 305 DKTICVWRRDGAIHTCLSVLTGHTG-PVKCLAV--EEDRDSSSSTSSCAQRWIVYSGSLDKSDDDV 367 (368)
Q Consensus 305 dg~i~iw~~~~~~~~~~~~~~~h~~-~v~~l~~--~~~~~~~~~~~~~~~~w~l~sg~~D~~v~i~ 367 (368)
|-.|..||++.. ..++..+..|.+ .-..|-| .|+++ .|++|+.||.|++|
T Consensus 272 ~dkIl~WDiR~~-~~pv~~L~rhv~~TNQRI~FDld~~~~------------~LasG~tdG~V~vw 324 (406)
T KOG2919|consen 272 DDKILCWDIRYS-RDPVYALERHVGDTNQRILFDLDPKGE------------ILASGDTDGSVRVW 324 (406)
T ss_pred CCeEEEEeehhc-cchhhhhhhhccCccceEEEecCCCCc------------eeeccCCCccEEEE
Confidence 778999999865 356777777766 3344544 58888 46666666666665
No 184
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.83 E-value=2.6e-18 Score=130.17 Aligned_cols=228 Identities=12% Similarity=0.116 Sum_probs=165.9
Q ss_pred cCcCCcEEEEEecCC-------EEEEccCCCcEEEEcCCcce-----------ecccCCCCCeeEEEEe---CCEEEEEe
Q 047325 41 VREEGHIYSLAASKD-------LLYTGSDSKNIRVWKNLKEF-----------CGFKASSGLVKAIVIS---GEKIFTGH 99 (368)
Q Consensus 41 ~~h~~~i~~~~~~~~-------~l~s~~~dg~i~iw~~~~~~-----------~~~~~~~~~v~~~~~~---~~~l~s~~ 99 (368)
..|.-+++.+.|.|+ +|||.+. .+|+|.+..+. ..-..+.++++++.|+ .+++.+++
T Consensus 93 fd~~YP~tK~~wiPd~~g~~pdlLATs~D--~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSS 170 (364)
T KOG0290|consen 93 FDHPYPVTKLMWIPDSKGVYPDLLATSSD--FLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSS 170 (364)
T ss_pred CCCCCCccceEecCCccccCcchhhcccC--eEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeec
Confidence 467777888888543 6776654 79999875211 1123567899999998 78999999
Q ss_pred CCCeEEEEeecCCCccccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcCCC-CEEEEEeCCCcE
Q 047325 100 QDGKIRVWKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDC-GLLYTASWDRTF 178 (368)
Q Consensus 100 ~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i 178 (368)
-|-+..|||++++..- .....+..|.++|..++|...+ +.|++.+.||.+
T Consensus 171 iDTTCTiWdie~~~~~-----------------------------~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSv 221 (364)
T KOG0290|consen 171 IDTTCTIWDIETGVSG-----------------------------TVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSV 221 (364)
T ss_pred ccCeEEEEEEeecccc-----------------------------ceeeEEEecCcceeEEEeccCccceEEEecCCCcE
Confidence 9999999999987210 0112344599999999999854 588999999999
Q ss_pred EEEEccCCeEEEEeec---CCCceEEEEeCCCC--eEEEEcCC-CeEEEEEcCCCCCCcccccceeeccccccEEEEEEc
Q 047325 179 KVWRISDSKCLESVSA---HDDAVNSVVSSSEG--LIFTGSAD-GTVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVS 252 (368)
Q Consensus 179 ~iwd~~~~~~~~~~~~---~~~~v~~~~~~~~~--~l~~~~~d-g~i~i~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 252 (368)
++||++..+.-..+.. ...+...++|++.. ++++-..| ..|.|.|+|.... ++..+.+|++.|+.++|.
T Consensus 222 RmFDLR~leHSTIIYE~p~~~~pLlRLswnkqDpnymATf~~dS~~V~iLDiR~P~t-----pva~L~~H~a~VNgIaWa 296 (364)
T KOG0290|consen 222 RMFDLRSLEHSTIIYEDPSPSTPLLRLSWNKQDPNYMATFAMDSNKVVILDIRVPCT-----PVARLRNHQASVNGIAWA 296 (364)
T ss_pred EEEEecccccceEEecCCCCCCcceeeccCcCCchHHhhhhcCCceEEEEEecCCCc-----ceehhhcCcccccceEec
Confidence 9999998664433332 24578889999887 77766654 5799999997654 677889999999999999
Q ss_pred CC-CCEEEEecCCCcEEEEeCCCccc-----c-ceeeeccceEEEEEEe-CCCEEEEeeC
Q 047325 253 SS-RSIVYCGSSDGLVNFWEREKQLS-----H-GGVLKGHKLAVLCLAA-AGKLVFSGSA 304 (368)
Q Consensus 253 ~~-~~~l~~~~~dg~i~i~d~~~~~~-----~-~~~~~~~~~~~~~~~~-~~~~l~~~~~ 304 (368)
|. ...|++++.|..+.+||+..... + .....++...-+.+++ .+..++.+..
T Consensus 297 PhS~~hictaGDD~qaliWDl~q~~~~~~~dPilay~a~~EVNqi~Ws~~~~Dwiai~~~ 356 (364)
T KOG0290|consen 297 PHSSSHICTAGDDCQALIWDLQQMPRENGEDPILAYTAGGEVNQIQWSSSQPDWIAICFG 356 (364)
T ss_pred CCCCceeeecCCcceEEEEecccccccCCCCchhhhhccceeeeeeecccCCCEEEEEec
Confidence 94 56899999999999999985432 1 1111233333344443 4677777654
No 185
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.83 E-value=7.8e-18 Score=145.55 Aligned_cols=281 Identities=16% Similarity=0.243 Sum_probs=195.0
Q ss_pred CcCCcEEEEEec--CCEEEEccCCCcEEEEcCCc------ceecccCCCCCeeEEEEe--CCEEEEEeCCCeEEEEeecC
Q 047325 42 REEGHIYSLAAS--KDLLYTGSDSKNIRVWKNLK------EFCGFKASSGLVKAIVIS--GEKIFTGHQDGKIRVWKISP 111 (368)
Q Consensus 42 ~h~~~i~~~~~~--~~~l~s~~~dg~i~iw~~~~------~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~vw~~~~ 111 (368)
.|.-.++|++++ ++++|+|..||.|.+|.-.. ....+..|...|.+++|+ |.+|++|+..|.+.+|.+++
T Consensus 203 ~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T 282 (792)
T KOG1963|consen 203 HHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDEVNSLSFSSDGAYLLSGGREGVLVLWQLET 282 (792)
T ss_pred hhcccceeEEeccccceEEEeccCCcEEEEeccccccccccceEEEecccccceeEEecCCceEeecccceEEEEEeecC
Confidence 455557777776 45999999999999996332 345678899999999998 99999999999999999999
Q ss_pred CCccccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcCCCCEEEEEeCCCcEEEEEccCCeEEEE
Q 047325 112 KNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCGLLYTASWDRTFKVWRISDSKCLES 191 (368)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~ 191 (368)
+++....+ -.++|..+.++||+.+.+....|+.|++....+.+...+
T Consensus 283 ~~kqfLPR---------------------------------Lgs~I~~i~vS~ds~~~sl~~~DNqI~li~~~dl~~k~t 329 (792)
T KOG1963|consen 283 GKKQFLPR---------------------------------LGSPILHIVVSPDSDLYSLVLEDNQIHLIKASDLEIKST 329 (792)
T ss_pred CCcccccc---------------------------------cCCeeEEEEEcCCCCeEEEEecCceEEEEeccchhhhhh
Confidence 87433332 567899999999999999999999999998866554444
Q ss_pred eecC-----------CCceEEEEeCCC-CeEEEEcCCCeEEEEEcCCCCCCcccccceee-----ccccccEEEEEEcCC
Q 047325 192 VSAH-----------DDAVNSVVSSSE-GLIFTGSADGTVKVWKREQHGKGTKHSLAQTL-----LKQECAVTALVVSSS 254 (368)
Q Consensus 192 ~~~~-----------~~~v~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~-----~~~~~~i~~~~~~~~ 254 (368)
+.+. .+-.+.++++|. +.++-.+..|.|.+||+-+.....+......- ..+...+++++.+..
T Consensus 330 Isgi~~~~~~~k~~~~~l~t~~~idpr~~~~vln~~~g~vQ~ydl~td~~i~~~~v~~~n~~~~~~n~~v~itav~~~~~ 409 (792)
T KOG1963|consen 330 ISGIKPPTPSTKTRPQSLTTGVSIDPRTNSLVLNGHPGHVQFYDLYTDSTIYKLQVCDENYSDGDVNIQVGITAVARSRF 409 (792)
T ss_pred ccCccCCCccccccccccceeEEEcCCCCceeecCCCceEEEEeccccceeeeEEEEeecccCCcceeEEeeeeehhhcc
Confidence 4322 234566788883 48888899999999999765432111111110 023456788888888
Q ss_pred CCEEEEec--------CCC--cEEEEeCCCccc----cceeeeccceEE--EEEEe--CCCEEEEeeCCCeEEEEecCCC
Q 047325 255 RSIVYCGS--------SDG--LVNFWEREKQLS----HGGVLKGHKLAV--LCLAA--AGKLVFSGSADKTICVWRRDGA 316 (368)
Q Consensus 255 ~~~l~~~~--------~dg--~i~i~d~~~~~~----~~~~~~~~~~~~--~~~~~--~~~~l~~~~~dg~i~iw~~~~~ 316 (368)
|+++++.- .|| .+++|-...... ......+|.... +++.+ .....++++.||.++||-+...
T Consensus 410 gs~maT~E~~~d~~~~~~~e~~LKFW~~n~~~kt~~L~T~I~~PH~~~~vat~~~~~~rs~~~vta~~dg~~KiW~~~~~ 489 (792)
T KOG1963|consen 410 GSWMATLEARIDKFNFFDGEVSLKFWQYNPNSKTFILNTKINNPHGNAFVATIFLNPTRSVRCVTASVDGDFKIWVFTDD 489 (792)
T ss_pred ceEEEEeeeeehhhhccCceEEEEEEEEcCCcceeEEEEEEecCCCceeEEEEEecCcccceeEEeccCCeEEEEEEecc
Confidence 99988863 233 467787653322 223344566544 33333 2348999999999999987321
Q ss_pred --------ceeeeEeeeccccCeeEEEEecCCeeeecC-CcceEEEEE
Q 047325 317 --------IHTCLSVLTGHTGPVKCLAVEEDRDSSSST-SSCAQRWIV 355 (368)
Q Consensus 317 --------~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~-~~~~~~w~l 355 (368)
...+...-.-|..++++++|+.||..++.+ ++.+.+|..
T Consensus 490 ~n~~k~~s~W~c~~i~sy~k~~i~a~~fs~dGslla~s~~~~Itiwd~ 537 (792)
T KOG1963|consen 490 SNIYKKSSNWTCKAIGSYHKTPITALCFSQDGSLLAVSFDDTITIWDY 537 (792)
T ss_pred cccCcCccceEEeeeeccccCcccchhhcCCCcEEEEecCCEEEEecC
Confidence 122333223378899999999999855433 333455543
No 186
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.83 E-value=3.4e-19 Score=137.80 Aligned_cols=252 Identities=13% Similarity=0.205 Sum_probs=167.4
Q ss_pred cCCCceeeeccCcCCcEEEEEec----CCEEEEccCCCcEEEEcCCcc----eecccCCC-CCeeEEEEe--CCEEEEEe
Q 047325 31 LPQNGLIGSLVREEGHIYSLAAS----KDLLYTGSDSKNIRVWKNLKE----FCGFKASS-GLVKAIVIS--GEKIFTGH 99 (368)
Q Consensus 31 ~~~~~~~~~~~~h~~~i~~~~~~----~~~l~s~~~dg~i~iw~~~~~----~~~~~~~~-~~v~~~~~~--~~~l~s~~ 99 (368)
...++.+..+.+|++.++.+.|. +..+.+|+.||+||+||+... ...+..+. .+..+++.+ ++.+++|.
T Consensus 57 ~~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f~~ld~nck~~ii~~Gt 136 (376)
T KOG1188|consen 57 KGTGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTPFICLDLNCKKNIIACGT 136 (376)
T ss_pred ccchhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCcceEeeccCcCCeEEecc
Confidence 34477888899999999999884 459999999999999998632 23344554 566677775 55666664
Q ss_pred C----CCeEEEEeecCCCccccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcC-CCCEEEEEeC
Q 047325 100 Q----DGKIRVWKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQ-DCGLLYTASW 174 (368)
Q Consensus 100 ~----dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~ 174 (368)
. |-.|.+||++..++....... .|.+.|+++.|+| +.++|++|+.
T Consensus 137 E~~~s~A~v~lwDvR~~qq~l~~~~e------------------------------SH~DDVT~lrFHP~~pnlLlSGSv 186 (376)
T KOG1188|consen 137 ELTRSDASVVLWDVRSEQQLLRQLNE------------------------------SHNDDVTQLRFHPSDPNLLLSGSV 186 (376)
T ss_pred ccccCceEEEEEEeccccchhhhhhh------------------------------hccCcceeEEecCCCCCeEEeecc
Confidence 3 667999999988763222211 2999999999999 5679999999
Q ss_pred CCcEEEEEccCCe---EEEEeecCCCceEEEEeCCCC--eEEEEcCCCeEEEEEcCCCCCCccccccee-------eccc
Q 047325 175 DRTFKVWRISDSK---CLESVSAHDDAVNSVVSSSEG--LIFTGSADGTVKVWKREQHGKGTKHSLAQT-------LLKQ 242 (368)
Q Consensus 175 d~~i~iwd~~~~~---~~~~~~~~~~~v~~~~~~~~~--~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~-------~~~~ 242 (368)
||.|.+||+.... .+...-.+...|.++.|..++ .+.+-+...+..+|+++.+........... ....
T Consensus 187 DGLvnlfD~~~d~EeDaL~~viN~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~~~~~~~~~~~~~~d~r~~~~~ 266 (376)
T KOG1188|consen 187 DGLVNLFDTKKDNEEDALLHVINHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGSEETWLENPDVSADDLRKEDNC 266 (376)
T ss_pred cceEEeeecCCCcchhhHHHhhcccceeeeeeeecCCcceEEEEEccCceeEEEccCCChhhcccCccchhhhHHhhhhh
Confidence 9999999997542 122222467789999999998 899999999999999987653111111100 0011
Q ss_pred cccEEEEEEcCCCCEEEEecC-CCcEEEEeCC---Cc--cccceeeec-cceEEEEEEe--CCCEEEEeeCCCeEEEEec
Q 047325 243 ECAVTALVVSSSRSIVYCGSS-DGLVNFWERE---KQ--LSHGGVLKG-HKLAVLCLAA--AGKLVFSGSADKTICVWRR 313 (368)
Q Consensus 243 ~~~i~~~~~~~~~~~l~~~~~-dg~i~i~d~~---~~--~~~~~~~~~-~~~~~~~~~~--~~~~l~~~~~dg~i~iw~~ 313 (368)
..-|.+. ...+...++.++. -+...++-+. ++ ......+.+ |...|.++.+ .+..+++|++||.+.+|..
T Consensus 267 dY~I~~~-~~~~~~~~~l~g~~~n~~~~~~~~~~~s~~~~~~~a~l~g~~~eiVR~i~~~~~~~~l~TGGEDG~l~~Wk~ 345 (376)
T KOG1188|consen 267 DYVINEH-SPGDKDTCALAGTDSNKGTIFPLVDTSSGSLLTEPAILQGGHEEIVRDILFDVKNDVLYTGGEDGLLQAWKV 345 (376)
T ss_pred hheeecc-cCCCcceEEEeccccCceeEEEeeecccccccCccccccCCcHHHHHHHhhhcccceeeccCCCceEEEEec
Confidence 1112221 1223444444443 5555555433 21 112233344 5555555544 5889999999999999975
No 187
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.83 E-value=3e-19 Score=149.14 Aligned_cols=226 Identities=15% Similarity=0.227 Sum_probs=163.7
Q ss_pred ccCCCcEEEEcCCccee------cccCCCCCeeEEEEe---CCEEEEEeCCCeEEEEeecCCCccccccCCccccceeee
Q 047325 60 GSDSKNIRVWKNLKEFC------GFKASSGLVKAIVIS---GEKIFTGHQDGKIRVWKISPKNQSVHKRAGTLPTLKDIF 130 (368)
Q Consensus 60 ~~~dg~i~iw~~~~~~~------~~~~~~~~v~~~~~~---~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~ 130 (368)
++.-|.|-|+++.+.-. .-......|+.+.|+ .+.|+.++.||.|++|.+..+.......
T Consensus 599 ~g~gG~iai~el~~PGrLPDgv~p~l~Ngt~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~~----------- 667 (1012)
T KOG1445|consen 599 AGSGGVIAIYELNEPGRLPDGVMPGLFNGTLVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPENEM----------- 667 (1012)
T ss_pred cCCCceEEEEEcCCCCCCCcccccccccCceeeecccCCCChHHeeecccCceEEEEEeccCCCCcccC-----------
Confidence 45578999999875322 222345678999987 7799999999999999998775432221
Q ss_pred eccCCCCceeEecccceeeeeecCCCEeEEEEcC-CCCEEEEEeCCCcEEEEEccCCeEEEEeecCCCceEEEEeCCCC-
Q 047325 131 KSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQ-DCGLLYTASWDRTFKVWRISDSKCLESVSAHDDAVNSVVSSSEG- 208 (368)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~- 208 (368)
.....+..|...|+++.|+| ..+.|++++.|.+|++||+.+++....+.+|.+.|..++|+|+|
T Consensus 668 --------------tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl~~~~~~~~l~gHtdqIf~~AWSpdGr 733 (1012)
T KOG1445|consen 668 --------------TPEKILTIHGEKITSLRFHPLAADVLAVASYDSTIELWDLANAKLYSRLVGHTDQIFGIAWSPDGR 733 (1012)
T ss_pred --------------CcceeeecccceEEEEEecchhhhHhhhhhccceeeeeehhhhhhhheeccCcCceeEEEECCCCc
Confidence 23345667999999999999 45689999999999999999999999999999999999999999
Q ss_pred eEEEEcCCCeEEEEEcCCCCCCcccccceeecc-ccccEEEEEEcCCCCEEEEecCC----CcEEEEeCCCcc-cccee-
Q 047325 209 LIFTGSADGTVKVWKREQHGKGTKHSLAQTLLK-QECAVTALVVSSSRSIVYCGSSD----GLVNFWEREKQL-SHGGV- 281 (368)
Q Consensus 209 ~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~-~~~~i~~~~~~~~~~~l~~~~~d----g~i~i~d~~~~~-~~~~~- 281 (368)
.+++.+.||+|++|+.+.... +++.-.+ ....-..+.|.-+|+++++.+.| ..|.+||.++-. .....
T Consensus 734 ~~AtVcKDg~~rVy~Prs~e~-----pv~Eg~gpvgtRgARi~wacdgr~viv~Gfdk~SeRQv~~Y~Aq~l~~~pl~t~ 808 (1012)
T KOG1445|consen 734 RIATVCKDGTLRVYEPRSREQ-----PVYEGKGPVGTRGARILWACDGRIVIVVGFDKSSERQVQMYDAQTLDLRPLYTQ 808 (1012)
T ss_pred ceeeeecCceEEEeCCCCCCC-----ccccCCCCccCcceeEEEEecCcEEEEecccccchhhhhhhhhhhccCCcceee
Confidence 999999999999999987543 2222111 12233456787899988887655 467888866422 11011
Q ss_pred -ee-ccceEEEEEEeC-CCEEEEeeCCCeEEEEecCC
Q 047325 282 -LK-GHKLAVLCLAAA-GKLVFSGSADKTICVWRRDG 315 (368)
Q Consensus 282 -~~-~~~~~~~~~~~~-~~~l~~~~~dg~i~iw~~~~ 315 (368)
+. ....-+-.+.+| +-++++|-.|..|.+|.+-.
T Consensus 809 ~lDvaps~LvP~YD~Ds~~lfltGKGD~~v~~yEv~~ 845 (1012)
T KOG1445|consen 809 VLDVAPSPLVPHYDYDSNVLFLTGKGDRFVNMYEVIY 845 (1012)
T ss_pred eecccCccccccccCCCceEEEecCCCceEEEEEecC
Confidence 11 111112223344 45778898999999998754
No 188
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.82 E-value=1.8e-16 Score=138.78 Aligned_cols=280 Identities=32% Similarity=0.481 Sum_probs=199.2
Q ss_pred CceeeeccCcCCcEEEEEecCC--EEEEccC-CCcEEEEcCCc--ceecccCCCCCeeEEEEe--CC-EEEEEeCCCeEE
Q 047325 34 NGLIGSLVREEGHIYSLAASKD--LLYTGSD-SKNIRVWKNLK--EFCGFKASSGLVKAIVIS--GE-KIFTGHQDGKIR 105 (368)
Q Consensus 34 ~~~~~~~~~h~~~i~~~~~~~~--~l~s~~~-dg~i~iw~~~~--~~~~~~~~~~~v~~~~~~--~~-~l~s~~~dg~i~ 105 (368)
......+..|...|.+++|.++ .+++++. |+.+++|+... ....+..|...|.++++. +. .+++++.|+.|+
T Consensus 145 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~ 224 (466)
T COG2319 145 GKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIR 224 (466)
T ss_pred CeEEEEEecCcccEEEEEECCCCCEEEecCCCCCceEEEEcCCCceEEeeccCCCceEEEEEcCCcceEEEEecCCCcEE
Confidence 5677789999999999999765 6888875 99999999874 566778899999999998 44 455559999999
Q ss_pred EEeecCCCccccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcCCCCEEEEEeCCCcEEEEEccC
Q 047325 106 VWKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCGLLYTASWDRTFKVWRISD 185 (368)
Q Consensus 106 vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~ 185 (368)
+||...+..... .+.+|...+ ...|++++..+++++.|+.+++||+..
T Consensus 225 ~wd~~~~~~~~~-------------------------------~~~~~~~~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~ 272 (466)
T COG2319 225 LWDLSTGKLLRS-------------------------------TLSGHSDSV-VSSFSPDGSLLASGSSDGTIRLWDLRS 272 (466)
T ss_pred EEECCCCcEEee-------------------------------ecCCCCcce-eEeECCCCCEEEEecCCCcEEEeeecC
Confidence 997764432221 122366654 338999988899999999999999987
Q ss_pred CeE-EEEeecCCCceEEEEeCCCC-eEEEEcCCCeEEEEEcCCCCCCccccccee--eccccccEEEEEEcCCCCEEEEe
Q 047325 186 SKC-LESVSAHDDAVNSVVSSSEG-LIFTGSADGTVKVWKREQHGKGTKHSLAQT--LLKQECAVTALVVSSSRSIVYCG 261 (368)
Q Consensus 186 ~~~-~~~~~~~~~~v~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~--~~~~~~~i~~~~~~~~~~~l~~~ 261 (368)
... +..+..|...+.++.+.|++ .+++++.|+.+.+||.+.... ... ...|...+..+.+.+++..++.+
T Consensus 273 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 346 (466)
T COG2319 273 SSSLLRTLSGHSSSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKL------LSSLTLKGHEGPVSSLSFSPDGSLLVSG 346 (466)
T ss_pred CCcEEEEEecCCccEEEEEECCCCCEEEEeeCCCcEEEEEcCCCce------EEEeeecccCCceEEEEECCCCCEEEEe
Confidence 664 44446788999999999966 777788888899998876532 122 23566678899884332455555
Q ss_pred -cCCCcEEEEeCCCccccceeeeccc-eEEEEEEeCCCEEEE-eeCCCeEEEEecCCCceeeeEeeeccccCeeEEEEec
Q 047325 262 -SSDGLVNFWEREKQLSHGGVLKGHK-LAVLCLAAAGKLVFS-GSADKTICVWRRDGAIHTCLSVLTGHTGPVKCLAVEE 338 (368)
Q Consensus 262 -~~dg~i~i~d~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~-~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~l~~~~ 338 (368)
..|+.+.+|+..... ......... .....+.+ ...+.. +..++.+.+|+.... ........+...+....+++
T Consensus 347 ~~~d~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~ 422 (466)
T COG2319 347 GSDDGTIRLWDLRTGK-PLKTLEGHSNVLSVSFSP-DGRVVSSGSTDGTVRLWDLSTG--SLLRNLDGHTSRVTSLDFSP 422 (466)
T ss_pred ecCCCcEEeeecCCCc-eeEEecCCceEEEEEECC-CCCEEEEecCCCceEEEecccC--eeeeeccCCCCcEEEEEECC
Confidence 688999999998766 222222222 23344444 333443 688999999998765 33333333327899999999
Q ss_pred CCeeeecCCcceEEEEEeeCCcccccccC
Q 047325 339 DRDSSSSTSSCAQRWIVYSGSLDKSDDDV 367 (368)
Q Consensus 339 ~~~~~~~~~~~~~~w~l~sg~~D~~v~i~ 367 (368)
++.. +++++.++.+++|
T Consensus 423 ~~~~------------~~~~~~~~~~~~~ 439 (466)
T COG2319 423 DGKS------------LASGSSDNTIRLW 439 (466)
T ss_pred CCcE------------EEEecCCCcEEEE
Confidence 9984 4445556555555
No 189
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.82 E-value=1e-17 Score=128.59 Aligned_cols=207 Identities=16% Similarity=0.167 Sum_probs=160.9
Q ss_pred cCcCCcEEEEEecCC--EEEEccCCCcEEEEcCC-----cceecccCCCCCeeEEEEe--CCEEEEEeCCCeEEEEeecC
Q 047325 41 VREEGHIYSLAASKD--LLYTGSDSKNIRVWKNL-----KEFCGFKASSGLVKAIVIS--GEKIFTGHQDGKIRVWKISP 111 (368)
Q Consensus 41 ~~h~~~i~~~~~~~~--~l~s~~~dg~i~iw~~~-----~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~vw~~~~ 111 (368)
..-..+|+|.+|+.+ .+|.+.....|.||... +...+++.|...|+.++|. .+.|++|+.|..-++|....
T Consensus 7 ~~~~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrIvtcs~drnayVw~~~~ 86 (361)
T KOG1523|consen 7 HRLLEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQPS 86 (361)
T ss_pred eeccCceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCCceeEccCCCCccccccCC
Confidence 334678999999866 89999999999999755 3456788999999999998 77999999999999999854
Q ss_pred CCccccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcCCCCEEEEEeCCCcEEEEEccCCeE---
Q 047325 112 KNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCGLLYTASWDRTFKVWRISDSKC--- 188 (368)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~--- 188 (368)
+..- .+..++..++...+++.|+|.++.|++|+.-..|.+|-.+...-
T Consensus 87 ~~~W-----------------------------kptlvLlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdWWV 137 (361)
T KOG1523|consen 87 GGTW-----------------------------KPTLVLLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQENDWWV 137 (361)
T ss_pred CCee-----------------------------ccceeEEEeccceeeEeecCcCceEEeccCccEEEEEEEecccceeh
Confidence 3311 12234455899999999999999999999999999998865432
Q ss_pred -EEEeecCCCceEEEEeCCCC-eEEEEcCCCeEEEEEcCCCCC------------CcccccceeeccccccEEEEEEcCC
Q 047325 189 -LESVSAHDDAVNSVVSSSEG-LIFTGSADGTVKVWKREQHGK------------GTKHSLAQTLLKQECAVTALVVSSS 254 (368)
Q Consensus 189 -~~~~~~~~~~v~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~------------~~~~~~~~~~~~~~~~i~~~~~~~~ 254 (368)
.+.-+.+...|.++.|+|++ +|++|+.|+..++|..--.+. ..-...+.......+.+..+.|+|+
T Consensus 138 sKhikkPirStv~sldWhpnnVLlaaGs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~s 217 (361)
T KOG1523|consen 138 SKHIKKPIRSTVTSLDWHPNNVLLAAGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPS 217 (361)
T ss_pred hhhhCCccccceeeeeccCCcceecccccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCC
Confidence 12234467889999999999 999999999999986421110 0001122333355678999999999
Q ss_pred CCEEEEecCCCcEEEEeCCCcc
Q 047325 255 RSIVYCGSSDGLVNFWEREKQL 276 (368)
Q Consensus 255 ~~~l~~~~~dg~i~i~d~~~~~ 276 (368)
|+.|+-.+.|..+.+-|...+.
T Consensus 218 G~~lawv~Hds~v~~~da~~p~ 239 (361)
T KOG1523|consen 218 GNRLAWVGHDSTVSFVDAAGPS 239 (361)
T ss_pred CCEeeEecCCCceEEeecCCCc
Confidence 9999999999999999977654
No 190
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.82 E-value=2e-18 Score=141.35 Aligned_cols=253 Identities=17% Similarity=0.216 Sum_probs=173.6
Q ss_pred CcCCcEEEEEecCC-EEEEccCCCcEEEEc-CCcc-eecccCCCCCeeE-EEE-----e----CCEEEEEeCCCeEEEEe
Q 047325 42 REEGHIYSLAASKD-LLYTGSDSKNIRVWK-NLKE-FCGFKASSGLVKA-IVI-----S----GEKIFTGHQDGKIRVWK 108 (368)
Q Consensus 42 ~h~~~i~~~~~~~~-~l~s~~~dg~i~iw~-~~~~-~~~~~~~~~~v~~-~~~-----~----~~~l~s~~~dg~i~vw~ 108 (368)
.|...|.|+.+.++ -++..++|..+.+|. +.+. ..........+.. +.. . .+.++.++.||.+.+.+
T Consensus 12 r~~e~vc~v~w~~~eei~~~~dDh~~~~~~~~~~~s~~~~~~p~df~pt~~h~~~rs~~~g~~~d~~~i~s~DGkf~il~ 91 (737)
T KOG1524|consen 12 RNSEKVCCVDWSSNEEIYFVSDDHQIFKWSDVSRDSVEVAKLPDDFVPTDMHLGGRSSGGGKGSDTLLICSNDGRFVILN 91 (737)
T ss_pred ccceeEEeecccccceEEEeccCceEEEeecccchhhhhhhCCcccCCccccccccccCCCCCcceEEEEcCCceEEEec
Confidence 56667778888765 455555666666664 3321 1111111111111 111 1 35788999999999887
Q ss_pred ecCCCccccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcCCCCEEEEEeCCCcEEEEEccCCeE
Q 047325 109 ISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCGLLYTASWDRTFKVWRISDSKC 188 (368)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~ 188 (368)
-...-+. ....|.+.+.+-.|+|+|.-|++++.||.|++|. ++|..
T Consensus 92 k~~rVE~---------------------------------sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWS-rsGML 137 (737)
T KOG1524|consen 92 KSARVER---------------------------------SISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWS-RSGML 137 (737)
T ss_pred ccchhhh---------------------------------hhhhhhhhhhhcccCCCCceeeeecCCceEEEEe-ccchH
Confidence 5432211 1112999999999999999999999999999998 56766
Q ss_pred EEEeecCCCceEEEEeCCCC--eEEEEcCCCeEEEEEcCCCCCCcccccceeeccccccEEEEEEcCCCCEEEEecCCCc
Q 047325 189 LESVSAHDDAVNSVVSSSEG--LIFTGSADGTVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSSSRSIVYCGSSDGL 266 (368)
Q Consensus 189 ~~~~~~~~~~v~~~~~~~~~--~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~ 266 (368)
..++.....+|.|++|.|+. .+++. .+.+.|=.+..+. .......|.+-|.++.|++..+++++|++|-.
T Consensus 138 RStl~Q~~~~v~c~~W~p~S~~vl~c~--g~h~~IKpL~~n~------k~i~WkAHDGiiL~~~W~~~s~lI~sgGED~k 209 (737)
T KOG1524|consen 138 RSTVVQNEESIRCARWAPNSNSIVFCQ--GGHISIKPLAANS------KIIRWRAHDGLVLSLSWSTQSNIIASGGEDFR 209 (737)
T ss_pred HHHHhhcCceeEEEEECCCCCceEEec--CCeEEEeeccccc------ceeEEeccCcEEEEeecCccccceeecCCcee
Confidence 66666678899999999998 44443 4566666665442 35678899999999999999999999999999
Q ss_pred EEEEeCCCccccceeeeccceEEEEEEeCC-CEEEEeeCCCeEEEEecCCCceeeeEeeeccccCeeEEEEecCCeeeec
Q 047325 267 VNFWEREKQLSHGGVLKGHKLAVLCLAAAG-KLVFSGSADKTICVWRRDGAIHTCLSVLTGHTGPVKCLAVEEDRDSSSS 345 (368)
Q Consensus 267 i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~ 345 (368)
.++||....... ....|..++++++++. ..++.++. +++|+ -+...+.|..++||+||..++.
T Consensus 210 fKvWD~~G~~Lf--~S~~~ey~ITSva~npd~~~~v~S~-nt~R~-------------~~p~~GSifnlsWS~DGTQ~a~ 273 (737)
T KOG1524|consen 210 FKIWDAQGANLF--TSAAEEYAITSVAFNPEKDYLLWSY-NTARF-------------SSPRVGSIFNLSWSADGTQATC 273 (737)
T ss_pred EEeecccCcccc--cCChhccceeeeeeccccceeeeee-eeeee-------------cCCCccceEEEEEcCCCceeec
Confidence 999998765443 3345566665555543 44444443 23331 1234678999999999998888
Q ss_pred CCcceEE
Q 047325 346 TSSCAQR 352 (368)
Q Consensus 346 ~~~~~~~ 352 (368)
+.+.+.+
T Consensus 274 gt~~G~v 280 (737)
T KOG1524|consen 274 GTSTGQL 280 (737)
T ss_pred cccCceE
Confidence 8777665
No 191
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.82 E-value=1.2e-17 Score=143.72 Aligned_cols=247 Identities=17% Similarity=0.145 Sum_probs=171.6
Q ss_pred CCcEEEEEec---CCEEEEccCCCcEEEEcCCccee--------cccCCCCCeeEEEEe----CCEEEEEeCCCeEEEEe
Q 047325 44 EGHIYSLAAS---KDLLYTGSDSKNIRVWKNLKEFC--------GFKASSGLVKAIVIS----GEKIFTGHQDGKIRVWK 108 (368)
Q Consensus 44 ~~~i~~~~~~---~~~l~s~~~dg~i~iw~~~~~~~--------~~~~~~~~v~~~~~~----~~~l~s~~~dg~i~vw~ 108 (368)
...|.|+.|+ +++++.|+.+|.|.+||+...-. ....|..+|+++.|. +.-+++++.||.|..|+
T Consensus 242 ~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~~~~~~~f~s~ssDG~i~~W~ 321 (555)
T KOG1587|consen 242 PSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQNEHNTEFFSLSSDGSICSWD 321 (555)
T ss_pred CCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEeccCCCCceEEEecCCcEeeee
Confidence 5679999886 55999999999999999874322 234689999999997 45699999999999998
Q ss_pred ecCCCccccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcC-CCCEEEEEeCCCcEEEEEccC--
Q 047325 109 ISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQ-DCGLLYTASWDRTFKVWRISD-- 185 (368)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~iwd~~~-- 185 (368)
++.-.............. ...-..-...+++++|.+ +...+++|+.+|.|.--+-..
T Consensus 322 ~~~l~~P~e~~~~~~~~~--------------------~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~ 381 (555)
T KOG1587|consen 322 TDMLSLPVEGLLLESKKH--------------------KGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYT 381 (555)
T ss_pred ccccccchhhcccccccc--------------------cccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCCc
Confidence 775543222221111000 000001234678999988 556899999999887733222
Q ss_pred -C-----eEEEEeecCCCceEEEEeCCCC-eEEEEcCCCeEEEEEcCCCCCCcccccceeeccccccEEEEEEcCCC-CE
Q 047325 186 -S-----KCLESVSAHDDAVNSVVSSSEG-LIFTGSADGTVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSSSR-SI 257 (368)
Q Consensus 186 -~-----~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~ 257 (368)
. +....+..|.++|.++.++|-+ .++..+.|-++++|...... .++..+..+...+++++|||-. ..
T Consensus 382 ~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~gDW~vriWs~~~~~-----~Pl~~~~~~~~~v~~vaWSptrpav 456 (555)
T KOG1587|consen 382 PAPEVSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVGDWTVRIWSEDVIA-----SPLLSLDSSPDYVTDVAWSPTRPAV 456 (555)
T ss_pred ccccccccccccccccCcceEeeecCCCccceeeeeccceeEeccccCCC-----CcchhhhhccceeeeeEEcCcCceE
Confidence 1 1233555688999999999988 44444449999999986322 3556666677779999999965 47
Q ss_pred EEEecCCCcEEEEeCCCccc-cceeeecc--ceEEEEEEeCCCEEEEeeCCCeEEEEecCC
Q 047325 258 VYCGSSDGLVNFWEREKQLS-HGGVLKGH--KLAVLCLAAAGKLVFSGSADKTICVWRRDG 315 (368)
Q Consensus 258 l~~~~~dg~i~i~d~~~~~~-~~~~~~~~--~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~ 315 (368)
++++..||.+.+||+..... +......+ ......++++++.|++|...|++++|++..
T Consensus 457 F~~~d~~G~l~iWDLl~~~~~Pv~s~~~~~~~l~~~~~s~~g~~lavGd~~G~~~~~~l~~ 517 (555)
T KOG1587|consen 457 FATVDGDGNLDIWDLLQDDEEPVLSQKVCSPALTRVRWSPNGKLLAVGDANGTTHILKLSE 517 (555)
T ss_pred EEEEcCCCceehhhhhccccCCcccccccccccceeecCCCCcEEEEecCCCcEEEEEcCc
Confidence 88888999999999874322 21222112 222344556799999999999999999854
No 192
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.81 E-value=9.4e-17 Score=125.73 Aligned_cols=228 Identities=12% Similarity=0.195 Sum_probs=167.3
Q ss_pred CcEEEEEecCC--EEEEccCCCcEEEEcCCcceecc--cCCCCCeeEEEEeCCEEEEEeCCCe--EEEEeecCCCccccc
Q 047325 45 GHIYSLAASKD--LLYTGSDSKNIRVWKNLKEFCGF--KASSGLVKAIVISGEKIFTGHQDGK--IRVWKISPKNQSVHK 118 (368)
Q Consensus 45 ~~i~~~~~~~~--~l~s~~~dg~i~iw~~~~~~~~~--~~~~~~v~~~~~~~~~l~s~~~dg~--i~vw~~~~~~~~~~~ 118 (368)
..+..+.|+.+ .|..|+.|| .++++.......+ ......|..+-|+...++..+.+.. +++.++..+......
T Consensus 6 ~ti~~~~~Nqd~~~lsvGs~~G-yk~~~~~~~~k~~~~~~~~~~IvEmLFSSSLvaiV~~~qpr~Lkv~~~Kk~~~ICe~ 84 (391)
T KOG2110|consen 6 PTINFIGFNQDSTLLSVGSKDG-YKIFSCSPFEKCFSKDTEGVSIVEMLFSSSLVAIVSIKQPRKLKVVHFKKKTTICEI 84 (391)
T ss_pred cceeeeeeccceeEEEccCCCc-eeEEecCchHHhhcccCCCeEEEEeecccceeEEEecCCCceEEEEEcccCceEEEE
Confidence 45667778877 788888888 4678765332222 2334456666777787777766543 888887765433222
Q ss_pred cCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcCCCCEEEEEeCCCcEEEEEccCCeEEEEeec---C
Q 047325 119 RAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCGLLYTASWDRTFKVWRISDSKCLESVSA---H 195 (368)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~---~ 195 (368)
. ...+|.++.++.+ .|+++-.+ .|+|||+++.+++.++.. +
T Consensus 85 ~---------------------------------fpt~IL~VrmNr~--RLvV~Lee-~IyIydI~~MklLhTI~t~~~n 128 (391)
T KOG2110|consen 85 F---------------------------------FPTSILAVRMNRK--RLVVCLEE-SIYIYDIKDMKLLHTIETTPPN 128 (391)
T ss_pred e---------------------------------cCCceEEEEEccc--eEEEEEcc-cEEEEecccceeehhhhccCCC
Confidence 2 4578888988754 67777664 499999999999988764 3
Q ss_pred CCceEEEEeCCCC-eEEEE--cCCCeEEEEEcCCCCCCcccccceeeccccccEEEEEEcCCCCEEEEecCCCc-EEEEe
Q 047325 196 DDAVNSVVSSSEG-LIFTG--SADGTVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSSSRSIVYCGSSDGL-VNFWE 271 (368)
Q Consensus 196 ~~~v~~~~~~~~~-~l~~~--~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~-i~i~d 271 (368)
...+.++..++.+ +++-- ...|.|.+||..+. +....+..|++.+.+++|+++|.+||++++.|+ ||+|.
T Consensus 129 ~~gl~AlS~n~~n~ylAyp~s~t~GdV~l~d~~nl------~~v~~I~aH~~~lAalafs~~G~llATASeKGTVIRVf~ 202 (391)
T KOG2110|consen 129 PKGLCALSPNNANCYLAYPGSTTSGDVVLFDTINL------QPVNTINAHKGPLAALAFSPDGTLLATASEKGTVIRVFS 202 (391)
T ss_pred ccceEeeccCCCCceEEecCCCCCceEEEEEcccc------eeeeEEEecCCceeEEEECCCCCEEEEeccCceEEEEEE
Confidence 4456667777666 66543 34789999999765 457778899999999999999999999999996 68999
Q ss_pred CCCccccceeeeccc-eEE--EEEEeCCCEEEEeeCCCeEEEEecCC
Q 047325 272 REKQLSHGGVLKGHK-LAV--LCLAAAGKLVFSGSADKTICVWRRDG 315 (368)
Q Consensus 272 ~~~~~~~~~~~~~~~-~~~--~~~~~~~~~l~~~~~dg~i~iw~~~~ 315 (368)
+.+++......++-. ..+ ++|++++++|++.+..++|++|.++.
T Consensus 203 v~~G~kl~eFRRG~~~~~IySL~Fs~ds~~L~~sS~TeTVHiFKL~~ 249 (391)
T KOG2110|consen 203 VPEGQKLYEFRRGTYPVSIYSLSFSPDSQFLAASSNTETVHIFKLEK 249 (391)
T ss_pred cCCccEeeeeeCCceeeEEEEEEECCCCCeEEEecCCCeEEEEEecc
Confidence 998887755554433 222 66778999999999999999999864
No 193
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.81 E-value=3.9e-16 Score=122.32 Aligned_cols=246 Identities=15% Similarity=0.180 Sum_probs=175.7
Q ss_pred CcEEEEEecCCEEEEccCCC--cEEEEcCCcc--eecccCCCCCeeEEEEeCCEEEEEeCCCeEEEEeecCCCccccccC
Q 047325 45 GHIYSLAASKDLLYTGSDSK--NIRVWKNLKE--FCGFKASSGLVKAIVISGEKIFTGHQDGKIRVWKISPKNQSVHKRA 120 (368)
Q Consensus 45 ~~i~~~~~~~~~l~s~~~dg--~i~iw~~~~~--~~~~~~~~~~v~~~~~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~ 120 (368)
-.|-.+-|+..++|..+.+. .+++.+..+. ++.+. -..+|.++.++.++|+++-.+. |.|||+.+.+.......
T Consensus 47 ~~IvEmLFSSSLvaiV~~~qpr~Lkv~~~Kk~~~ICe~~-fpt~IL~VrmNr~RLvV~Lee~-IyIydI~~MklLhTI~t 124 (391)
T KOG2110|consen 47 VSIVEMLFSSSLVAIVSIKQPRKLKVVHFKKKTTICEIF-FPTSILAVRMNRKRLVVCLEES-IYIYDIKDMKLLHTIET 124 (391)
T ss_pred eEEEEeecccceeEEEecCCCceEEEEEcccCceEEEEe-cCCceEEEEEccceEEEEEccc-EEEEecccceeehhhhc
Confidence 34666778888766665544 4888887643 44433 3467999999988888888764 99999998876544433
Q ss_pred CccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcCCCCEEEEEe--CCCcEEEEEccCCeEEEEeecCCCc
Q 047325 121 GTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCGLLYTAS--WDRTFKVWRISDSKCLESVSAHDDA 198 (368)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--~d~~i~iwd~~~~~~~~~~~~~~~~ 198 (368)
.. .+...+.++.+++.+.+++--+ ..|.|.+||+.+-+++..+..|++.
T Consensus 125 ~~-----------------------------~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~l~d~~nl~~v~~I~aH~~~ 175 (391)
T KOG2110|consen 125 TP-----------------------------PNPKGLCALSPNNANCYLAYPGSTTSGDVVLFDTINLQPVNTINAHKGP 175 (391)
T ss_pred cC-----------------------------CCccceEeeccCCCCceEEecCCCCCceEEEEEcccceeeeEEEecCCc
Confidence 21 1556677777777777877654 3689999999999999999999999
Q ss_pred eEEEEeCCCC-eEEEEcCCCe-EEEEEcCCCCCCcccccceeecc--ccccEEEEEEcCCCCEEEEecCCCcEEEEeCCC
Q 047325 199 VNSVVSSSEG-LIFTGSADGT-VKVWKREQHGKGTKHSLAQTLLK--QECAVTALVVSSSRSIVYCGSSDGLVNFWEREK 274 (368)
Q Consensus 199 v~~~~~~~~~-~l~~~~~dg~-i~i~d~~~~~~~~~~~~~~~~~~--~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~ 274 (368)
+.+++|+++| +||+++..|+ ||++.+..+.+ ...+.. ....|.+++|+|++++|++.+..++|++|.++.
T Consensus 176 lAalafs~~G~llATASeKGTVIRVf~v~~G~k------l~eFRRG~~~~~IySL~Fs~ds~~L~~sS~TeTVHiFKL~~ 249 (391)
T KOG2110|consen 176 LAALAFSPDGTLLATASEKGTVIRVFSVPEGQK------LYEFRRGTYPVSIYSLSFSPDSQFLAASSNTETVHIFKLEK 249 (391)
T ss_pred eeEEEECCCCCEEEEeccCceEEEEEEcCCccE------eeeeeCCceeeEEEEEEECCCCCeEEEecCCCeEEEEEecc
Confidence 9999999999 9999999987 68999977643 333322 245689999999999999999999999998763
Q ss_pred cccccee--------------------------------------ee-ccceEEEEEEe--CCCEEEEeeCCCeEEEEec
Q 047325 275 QLSHGGV--------------------------------------LK-GHKLAVLCLAA--AGKLVFSGSADKTICVWRR 313 (368)
Q Consensus 275 ~~~~~~~--------------------------------------~~-~~~~~~~~~~~--~~~~l~~~~~dg~i~iw~~ 313 (368)
....... +. .....+..+.+ ...++..++.||.++.|.+
T Consensus 250 ~~~~~~~~p~~~~~~~~~~sk~~~sylps~V~~~~~~~R~FAt~~l~~s~~~~~~~l~~~~~~~~v~vas~dG~~y~y~l 329 (391)
T KOG2110|consen 250 VSNNPPESPTAGTSWFGKVSKAATSYLPSQVSSVLDQSRKFATAKLPESGRKNICSLSSIQKIPRVLVASYDGHLYSYRL 329 (391)
T ss_pred cccCCCCCCCCCCcccchhhhhhhhhcchhhhhhhhhccceeEEEccCCCccceEEeeccCCCCEEEEEEcCCeEEEEEc
Confidence 2110000 00 00112334443 4678889999999999998
Q ss_pred CCCceeeeEeeecc
Q 047325 314 DGAIHTCLSVLTGH 327 (368)
Q Consensus 314 ~~~~~~~~~~~~~h 327 (368)
+...+-....++.|
T Consensus 330 ~~~~gGec~lik~h 343 (391)
T KOG2110|consen 330 PPKEGGECALIKRH 343 (391)
T ss_pred CCCCCceeEEEEee
Confidence 76433333444434
No 194
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.81 E-value=1e-17 Score=133.23 Aligned_cols=186 Identities=18% Similarity=0.236 Sum_probs=138.8
Q ss_pred eEEEEcCCCCEEEEEeCCCcEEEEEccCCeEEEEeecCCCceEEEEeCCCC-eEEEEcCCCeEEEEEcCCCCCCcccccc
Q 047325 158 SCMSLDQDCGLLYTASWDRTFKVWRISDSKCLESVSAHDDAVNSVVSSSEG-LIFTGSADGTVKVWKREQHGKGTKHSLA 236 (368)
Q Consensus 158 ~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~ 236 (368)
.+++|+.+|..+++++.||++++|+..+...+.....|...|.++.|+||+ .|++-+.| ..++|+.+++.......
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~~a~~t-- 224 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAALARKT-- 224 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCchhhhcC--
Confidence 789999999999999999999999988888888888999999999999999 88888989 99999999873211111
Q ss_pred eeeccccccEEEEEEcCCC-----CEEEEecCCCcEEEEeCCCccc-----cceeeecc-ceEEEEEEeCCCEEEEeeCC
Q 047325 237 QTLLKQECAVTALVVSSSR-----SIVYCGSSDGLVNFWEREKQLS-----HGGVLKGH-KLAVLCLAAAGKLVFSGSAD 305 (368)
Q Consensus 237 ~~~~~~~~~i~~~~~~~~~-----~~l~~~~~dg~i~i~d~~~~~~-----~~~~~~~~-~~~~~~~~~~~~~l~~~~~d 305 (368)
-.........+.|+.++ ..++....-+.|+.||+..... .......+ ....++++.+|++++.|+.|
T Consensus 225 --~~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGkf~AlGT~d 302 (398)
T KOG0771|consen 225 --PFSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGKFLALGTMD 302 (398)
T ss_pred --CcccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCCcEEEEeccC
Confidence 12334456677788766 2333344456677766543221 11222233 55667888899999999999
Q ss_pred CeEEEEecCCCceeeeEeeeccccCeeEEEEecCCeeeecCCcc
Q 047325 306 KTICVWRRDGAIHTCLSVLTGHTGPVKCLAVEEDRDSSSSTSSC 349 (368)
Q Consensus 306 g~i~iw~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~ 349 (368)
|.|.|++....+ .....-+.|..-|+.+.|+||.+.+++.+.+
T Consensus 303 GsVai~~~~~lq-~~~~vk~aH~~~VT~ltF~Pdsr~~~svSs~ 345 (398)
T KOG0771|consen 303 GSVAIYDAKSLQ-RLQYVKEAHLGFVTGLTFSPDSRYLASVSSD 345 (398)
T ss_pred CcEEEEEeceee-eeEeehhhheeeeeeEEEcCCcCcccccccC
Confidence 999999876652 2233346799999999999999987765544
No 195
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.80 E-value=6.1e-18 Score=146.20 Aligned_cols=233 Identities=15% Similarity=0.087 Sum_probs=160.8
Q ss_pred CCcEEEEcCCcc-eecccCCCCCeeEEEEe--CCEEEEEeCC---CeEEEEeecCCCccccccCCccccceeeeeccCCC
Q 047325 63 SKNIRVWKNLKE-FCGFKASSGLVKAIVIS--GEKIFTGHQD---GKIRVWKISPKNQSVHKRAGTLPTLKDIFKSSIKP 136 (368)
Q Consensus 63 dg~i~iw~~~~~-~~~~~~~~~~v~~~~~~--~~~l~s~~~d---g~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 136 (368)
+..|.+||.... ...+..|...+.+..|+ |+.|+.++.+ ..|.+||+.+++......
T Consensus 183 ~~~i~i~d~dg~~~~~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~----------------- 245 (429)
T PRK01742 183 PYEVRVADYDGFNQFIVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVAS----------------- 245 (429)
T ss_pred eEEEEEECCCCCCceEeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEec-----------------
Confidence 468999997643 44566778889999998 7788877654 369999998765321111
Q ss_pred CceeEecccceeeeeecCCCEeEEEEcCCCCEEEEEe-CCCcEEEE--EccCCeEEEEeecCCCceEEEEeCCCC-eEE-
Q 047325 137 SNYIEVRRHRTALWIRHSDAVSCMSLDQDCGLLYTAS-WDRTFKVW--RISDSKCLESVSAHDDAVNSVVSSSEG-LIF- 211 (368)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d~~i~iw--d~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~- 211 (368)
........+|+||++.|+.++ .+|.+.|| |+.+++. ..+..+...+....|+|+| .|+
T Consensus 246 ----------------~~g~~~~~~wSPDG~~La~~~~~~g~~~Iy~~d~~~~~~-~~lt~~~~~~~~~~wSpDG~~i~f 308 (429)
T PRK01742 246 ----------------FRGHNGAPAFSPDGSRLAFASSKDGVLNIYVMGANGGTP-SQLTSGAGNNTEPSWSPDGQSILF 308 (429)
T ss_pred ----------------CCCccCceeECCCCCEEEEEEecCCcEEEEEEECCCCCe-EeeccCCCCcCCEEECCCCCEEEE
Confidence 112233689999999888764 67766555 6655553 4455566778889999999 444
Q ss_pred EEcCCCeEEEEEcCCCCCCcccccceeeccccccEEEEEEcCCCCEEEEecCCCcEEEEeCCCccccceeeeccceEEEE
Q 047325 212 TGSADGTVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSSSRSIVYCGSSDGLVNFWEREKQLSHGGVLKGHKLAVLC 291 (368)
Q Consensus 212 ~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~ 291 (368)
++..++...+|+++..... ...+ .+.. ....|+|+++.|+..+.++ +.+||+.++.... ...........
T Consensus 309 ~s~~~g~~~I~~~~~~~~~-----~~~l-~~~~--~~~~~SpDG~~ia~~~~~~-i~~~Dl~~g~~~~-lt~~~~~~~~~ 378 (429)
T PRK01742 309 TSDRSGSPQVYRMSASGGG-----ASLV-GGRG--YSAQISADGKTLVMINGDN-VVKQDLTSGSTEV-LSSTFLDESPS 378 (429)
T ss_pred EECCCCCceEEEEECCCCC-----eEEe-cCCC--CCccCCCCCCEEEEEcCCC-EEEEECCCCCeEE-ecCCCCCCCce
Confidence 4456788888887643221 1111 2222 4578999999998887765 6669988764331 11222233457
Q ss_pred EEeCCCEEEEeeCCCeEEEEecCCCceeeeEeeeccccCeeEEEEecC
Q 047325 292 LAAAGKLVFSGSADKTICVWRRDGAIHTCLSVLTGHTGPVKCLAVEED 339 (368)
Q Consensus 292 ~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~l~~~~~ 339 (368)
++|++++|+.++.+|.+.+|++....+.....+..|.+.+...+|+|-
T Consensus 379 ~sPdG~~i~~~s~~g~~~~l~~~~~~G~~~~~l~~~~g~~~~p~wsp~ 426 (429)
T PRK01742 379 ISPNGIMIIYSSTQGLGKVLQLVSADGRFKARLPGSDGQVKFPAWSPY 426 (429)
T ss_pred ECCCCCEEEEEEcCCCceEEEEEECCCCceEEccCCCCCCCCcccCCC
Confidence 899999999999999999888754445677788888888999999985
No 196
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.80 E-value=2e-17 Score=145.77 Aligned_cols=250 Identities=18% Similarity=0.284 Sum_probs=167.8
Q ss_pred cCCCceeeeccCcC---CcEEEEEecC----CEEEEccCCCcEEEEcCCcc-------eec---ccC----CCCCeeEEE
Q 047325 31 LPQNGLIGSLVREE---GHIYSLAASK----DLLYTGSDSKNIRVWKNLKE-------FCG---FKA----SSGLVKAIV 89 (368)
Q Consensus 31 ~~~~~~~~~~~~h~---~~i~~~~~~~----~~l~s~~~dg~i~iw~~~~~-------~~~---~~~----~~~~v~~~~ 89 (368)
+..+..+..|..+. ..|+.+.+-. .++++|+.||.||||+.... +.. +.+ ..+.=.-+.
T Consensus 1093 ~e~~~~l~~F~n~~~~~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~~~~~~eLVTaw~~Ls~~~~~~r~~~~v~d 1172 (1387)
T KOG1517|consen 1093 WEKGRLLNGFDNGAFPDTRVSDLELINEQDDALLLTASSDGVIRIWKDYADKWKKPELVTAWSSLSDQLPGARGTGLVVD 1172 (1387)
T ss_pred cccCceeccccCCCCCCCccceeeeecccchhheeeeccCceEEEecccccccCCceeEEeeccccccCccCCCCCeeee
Confidence 33444444444332 3488887732 28999999999999974211 111 111 111112334
Q ss_pred Ee--CCEEEEEeCCCeEEEEeecCCCccccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcC-CC
Q 047325 90 IS--GEKIFTGHQDGKIRVWKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQ-DC 166 (368)
Q Consensus 90 ~~--~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~ 166 (368)
|. ..+|++++.-..|+|||............+ ....|+++.-+. .|
T Consensus 1173 WqQ~~G~Ll~tGd~r~IRIWDa~~E~~~~diP~~-------------------------------s~t~vTaLS~~~~~g 1221 (1387)
T KOG1517|consen 1173 WQQQSGHLLVTGDVRSIRIWDAHKEQVVADIPYG-------------------------------SSTLVTALSADLVHG 1221 (1387)
T ss_pred hhhhCCeEEecCCeeEEEEEecccceeEeecccC-------------------------------CCccceeecccccCC
Confidence 44 556777777889999999887654443332 344566665543 46
Q ss_pred CEEEEEeCCCcEEEEEccCCe---EEEEeecCCCc--eEEEEeCCCC--eEEEEcCCCeEEEEEcCCCCCCcccccceee
Q 047325 167 GLLYTASWDRTFKVWRISDSK---CLESVSAHDDA--VNSVVSSSEG--LIFTGSADGTVKVWKREQHGKGTKHSLAQTL 239 (368)
Q Consensus 167 ~~l~~~~~d~~i~iwd~~~~~---~~~~~~~~~~~--v~~~~~~~~~--~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~ 239 (368)
+.+++|..||.|++||.+... .+...+.|... |..+.+.+.| .|++|+.||.|++||+|...... .....
T Consensus 1222 n~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~e~---~~~iv 1298 (1387)
T KOG1517|consen 1222 NIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSKET---FLTIV 1298 (1387)
T ss_pred ceEEEeecCCceEEeecccCCccccceeecccCCcccceeEEeecCCCcceeeeccCCeEEEEecccCcccc---cceee
Confidence 899999999999999987543 46677788776 9999999888 79999999999999999852211 11111
Q ss_pred ccc--cccEEEEEEcCCCCEEEEecCCCcEEEEeCCCcccccee-----eecc--ceEEEEEEeCCCEEEEeeCCCeEEE
Q 047325 240 LKQ--ECAVTALVVSSSRSIVYCGSSDGLVNFWEREKQLSHGGV-----LKGH--KLAVLCLAAAGKLVFSGSADKTICV 310 (368)
Q Consensus 240 ~~~--~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~-----~~~~--~~~~~~~~~~~~~l~~~~~dg~i~i 310 (368)
..- .+..+++..+++...+|+|+. +.|+||++...+..... .... ....+.|+|..-++++|+.|.+|.|
T Consensus 1299 ~~~~yGs~lTal~VH~hapiiAsGs~-q~ikIy~~~G~~l~~~k~n~~F~~q~~gs~scL~FHP~~~llAaG~~Ds~V~i 1377 (1387)
T KOG1517|consen 1299 AHWEYGSALTALTVHEHAPIIASGSA-QLIKIYSLSGEQLNIIKYNPGFMGQRIGSVSCLAFHPHRLLLAAGSADSTVSI 1377 (1387)
T ss_pred eccccCccceeeeeccCCCeeeecCc-ceEEEEecChhhhcccccCcccccCcCCCcceeeecchhHhhhhccCCceEEE
Confidence 111 235999999999999999998 99999998754322111 1111 1234666777889999999999999
Q ss_pred EecCC
Q 047325 311 WRRDG 315 (368)
Q Consensus 311 w~~~~ 315 (368)
|....
T Consensus 1378 Ys~~k 1382 (1387)
T KOG1517|consen 1378 YSCEK 1382 (1387)
T ss_pred eecCC
Confidence 96544
No 197
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.79 E-value=1.8e-16 Score=117.40 Aligned_cols=232 Identities=15% Similarity=0.197 Sum_probs=158.9
Q ss_pred CceeeeccCcCCcEEEEEecCCEEEEccCCCcEEEEcCCccee--------c--c-----cCCCCCeeEEEEe--CCEEE
Q 047325 34 NGLIGSLVREEGHIYSLAASKDLLYTGSDSKNIRVWKNLKEFC--------G--F-----KASSGLVKAIVIS--GEKIF 96 (368)
Q Consensus 34 ~~~~~~~~~h~~~i~~~~~~~~~l~s~~~dg~i~iw~~~~~~~--------~--~-----~~~~~~v~~~~~~--~~~l~ 96 (368)
...+-..++|.++|+.++|..++|++|+. |.|+=|...+... . . ...-..|+++..+ .+-++
T Consensus 52 k~~iv~eqahdgpiy~~~f~d~~Lls~gd-G~V~gw~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~ 130 (325)
T KOG0649|consen 52 KLKIVPEQAHDGPIYYLAFHDDFLLSGGD-GLVYGWEWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSIL 130 (325)
T ss_pred CcceeeccccCCCeeeeeeehhheeeccC-ceEEEeeehhhhhhccchhhhhhcCccccCcccCCccceeEeccCCCcEE
Confidence 34445569999999999999889998886 9999997432211 1 1 1123457777776 55666
Q ss_pred EEeCCCeEEEEeecCCCccccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcCCCCEEEEEeCCC
Q 047325 97 TGHQDGKIRVWKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCGLLYTASWDR 176 (368)
Q Consensus 97 s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~ 176 (368)
.++.|+.+.-||+++++.. +.+.||++-|.++.-......+++|++||
T Consensus 131 ~AgGD~~~y~~dlE~G~i~--------------------------------r~~rGHtDYvH~vv~R~~~~qilsG~EDG 178 (325)
T KOG0649|consen 131 FAGGDGVIYQVDLEDGRIQ--------------------------------REYRGHTDYVHSVVGRNANGQILSGAEDG 178 (325)
T ss_pred EecCCeEEEEEEecCCEEE--------------------------------EEEcCCcceeeeeeecccCcceeecCCCc
Confidence 6668999999999998743 34567999999999866667899999999
Q ss_pred cEEEEEccCCeEEEEeecC----------CCceEEEEeCCCCeEEEEcCCCeEEEEEcCCCCCCcccccceeeccccccE
Q 047325 177 TFKVWRISDSKCLESVSAH----------DDAVNSVVSSSEGLIFTGSADGTVKVWKREQHGKGTKHSLAQTLLKQECAV 246 (368)
Q Consensus 177 ~i~iwd~~~~~~~~~~~~~----------~~~v~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~i 246 (368)
++++||.++++.+..+... ...|-+++.+.+ .+++|+ ...+.+|.++.... .....-..++
T Consensus 179 tvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~~ed-WlvCGg-Gp~lslwhLrsse~-------t~vfpipa~v 249 (325)
T KOG0649|consen 179 TVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAVNED-WLVCGG-GPKLSLWHLRSSES-------TCVFPIPARV 249 (325)
T ss_pred cEEEEeccccceeEEeccccChhhcCcccCceeEEEeccCc-eEEecC-CCceeEEeccCCCc-------eEEEecccce
Confidence 9999999999988877532 123556665443 555544 56799999997632 2333445667
Q ss_pred EEEEEcCCCCEEEEecCCCcEEEEeCCCccccceeeeccceEEEEEEeC---CCEEEEeeCCCeEEEE
Q 047325 247 TALVVSSSRSIVYCGSSDGLVNFWEREKQLSHGGVLKGHKLAVLCLAAA---GKLVFSGSADKTICVW 311 (368)
Q Consensus 247 ~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~---~~~l~~~~~dg~i~iw 311 (368)
..+.|. .+.++++++.+.|.-|.+..-... ....++. ..+..+++ -++|-.++..+.+.|+
T Consensus 250 ~~v~F~--~d~vl~~G~g~~v~~~~l~Gvl~a-~ip~~s~-~c~s~s~~~~p~k~~s~ag~s~~~~i~ 313 (325)
T KOG0649|consen 250 HLVDFV--DDCVLIGGEGNHVQSYTLNGVLQA-NIPVEST-ACYSASWQTSPIKFISIAGFSNKLHIL 313 (325)
T ss_pred eEeeee--cceEEEeccccceeeeeeccEEEE-eccCCcc-ceeeecccCCceEEEEecccceeeeee
Confidence 778885 456888888888999987753222 1111221 22222222 3456666667777776
No 198
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.79 E-value=1.2e-16 Score=122.79 Aligned_cols=251 Identities=13% Similarity=0.128 Sum_probs=184.8
Q ss_pred ccCCCCCeeEEEEe--CCEEEEEeCCCeEEEEeecCCCccccccCCccccceeeeeccCCCCceeEecccceeeeeecCC
Q 047325 78 FKASSGLVKAIVIS--GEKIFTGHQDGKIRVWKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSD 155 (368)
Q Consensus 78 ~~~~~~~v~~~~~~--~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (368)
+..-..+|+|.+|+ ...++.+.....|.||.....+.-.. ..++..|..
T Consensus 6 ~~~~~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~-----------------------------~htls~Hd~ 56 (361)
T KOG1523|consen 6 FHRLLEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEP-----------------------------AHTLSEHDK 56 (361)
T ss_pred eeeccCceeeeeecCCCceEEeccCCceEEEEEecCCCCcee-----------------------------ceehhhhCc
Confidence 33446789999998 66889999999999999887652211 122334999
Q ss_pred CEeEEEEcCCCCEEEEEeCCCcEEEEEccCC---eEEEEeecCCCceEEEEeCCCC-eEEEEcCCCeEEEEEcCCCCCCc
Q 047325 156 AVSCMSLDQDCGLLYTASWDRTFKVWRISDS---KCLESVSAHDDAVNSVVSSSEG-LIFTGSADGTVKVWKREQHGKGT 231 (368)
Q Consensus 156 ~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~---~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~ 231 (368)
.|+++.|.|..+.|++|+.|..-++|...++ ++...+..++...+++.|+|.+ ++++|+....|.+|-++..+.
T Consensus 57 ~vtgvdWap~snrIvtcs~drnayVw~~~~~~~WkptlvLlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENd-- 134 (361)
T KOG1523|consen 57 IVTGVDWAPKSNRIVTCSHDRNAYVWTQPSGGTWKPTLVLLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQEND-- 134 (361)
T ss_pred ceeEEeecCCCCceeEccCCCCccccccCCCCeeccceeEEEeccceeeEeecCcCceEEeccCccEEEEEEEecccc--
Confidence 9999999999999999999999999998433 4566677789999999999998 999999999999999875432
Q ss_pred ccccceeeccccccEEEEEEcCCCCEEEEecCCCcEEEEeCC-----Ccc--------c----cceee--eccceEEEEE
Q 047325 232 KHSLAQTLLKQECAVTALVVSSSRSIVYCGSSDGLVNFWERE-----KQL--------S----HGGVL--KGHKLAVLCL 292 (368)
Q Consensus 232 ~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~-----~~~--------~----~~~~~--~~~~~~~~~~ 292 (368)
-.........+...|++++|+|++-+|++|+.|+..++|..- +.. . +.... .+.-..-..|
T Consensus 135 WWVsKhikkPirStv~sldWhpnnVLlaaGs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~f 214 (361)
T KOG1523|consen 135 WWVSKHIKKPIRSTVTSLDWHPNNVLLAAGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLF 214 (361)
T ss_pred eehhhhhCCccccceeeeeccCCcceecccccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEe
Confidence 111222334567889999999999999999999999999731 110 0 00111 1222334678
Q ss_pred EeCCCEEEEeeCCCeEEEEecCCCceeeeEeeeccccCeeEEEEecCCeeeecCCcceEEEEEeeCCccc
Q 047325 293 AAAGKLVFSGSADKTICVWRRDGAIHTCLSVLTGHTGPVKCLAVEEDRDSSSSTSSCAQRWIVYSGSLDK 362 (368)
Q Consensus 293 ~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~w~l~sg~~D~ 362 (368)
+++|..|+-.+.|+.+.+-|...+.. .+.....-.-|..++.|-.+...++.+-+... .+++..++|
T Consensus 215 s~sG~~lawv~Hds~v~~~da~~p~~-~v~~~~~~~lP~ls~~~ise~~vv~ag~~c~P--~lf~~~~~~ 281 (361)
T KOG1523|consen 215 SPSGNRLAWVGHDSTVSFVDAAGPSE-RVQSVATAQLPLLSVSWISENSVVAAGYDCGP--VLFVTDEEG 281 (361)
T ss_pred CCCCCEeeEecCCCceEEeecCCCch-hccchhhccCCceeeEeecCCceeecCCCCCc--eEEEecccc
Confidence 88999999999999999998766532 33344334478999999988887777666444 344555554
No 199
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.78 E-value=8.7e-18 Score=133.67 Aligned_cols=196 Identities=20% Similarity=0.291 Sum_probs=149.1
Q ss_pred eEEEEe--CCEEEEEeCCCeEEEEeecCCCccccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEc
Q 047325 86 KAIVIS--GEKIFTGHQDGKIRVWKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLD 163 (368)
Q Consensus 86 ~~~~~~--~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 163 (368)
.+++|+ |..|++|+.||++|||++.+......... |...|.++.|+
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~e~~--------------------------------~~~eV~DL~FS 195 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTILEEIA--------------------------------HHAEVKDLDFS 195 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecCcchhhhhhHh--------------------------------hcCccccceeC
Confidence 456665 78999999999999999776554333322 88999999999
Q ss_pred CCCCEEEEEeCCCcEEEEEccCCeEEEEeec--CCCceEEEEeCCCC-----eEEEEc-CCCeEEEEEcCCCCCCccccc
Q 047325 164 QDCGLLYTASWDRTFKVWRISDSKCLESVSA--HDDAVNSVVSSSEG-----LIFTGS-ADGTVKVWKREQHGKGTKHSL 235 (368)
Q Consensus 164 ~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~--~~~~v~~~~~~~~~-----~l~~~~-~dg~i~i~d~~~~~~~~~~~~ 235 (368)
||++.|++-+.| ..++|+.+++..+..... .+.....+.|+.++ ++++.. ..+.|+.||+...... ....
T Consensus 196 ~dgk~lasig~d-~~~VW~~~~g~~~a~~t~~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~-~~l~ 273 (398)
T KOG0771|consen 196 PDGKFLASIGAD-SARVWSVNTGAALARKTPFSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGS-NFLR 273 (398)
T ss_pred CCCcEEEEecCC-ceEEEEeccCchhhhcCCcccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccc-cccc
Confidence 999999999999 899999999977766652 22345566776655 444433 3556777777544332 1112
Q ss_pred ceeeccccccEEEEEEcCCCCEEEEecCCCcEEEEeCCCccccceeeeccceEE--EEEEeCCCEEEEeeCCCeEEEEec
Q 047325 236 AQTLLKQECAVTALVVSSSRSIVYCGSSDGLVNFWEREKQLSHGGVLKGHKLAV--LCLAAAGKLVFSGSADKTICVWRR 313 (368)
Q Consensus 236 ~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~~~dg~i~iw~~ 313 (368)
..+.......|.+++.+++|++++.|+.||.|.|++..+-+......+.|...| +.|+||.+++++-+.|...++..+
T Consensus 274 ~~~~~~~~~siSsl~VS~dGkf~AlGT~dGsVai~~~~~lq~~~~vk~aH~~~VT~ltF~Pdsr~~~svSs~~~~~v~~l 353 (398)
T KOG0771|consen 274 LRKKIKRFKSISSLAVSDDGKFLALGTMDGSVAIYDAKSLQRLQYVKEAHLGFVTGLTFSPDSRYLASVSSDNEAAVTKL 353 (398)
T ss_pred hhhhhhccCcceeEEEcCCCcEEEEeccCCcEEEEEeceeeeeEeehhhheeeeeeEEEcCCcCcccccccCCceeEEEE
Confidence 233333445799999999999999999999999999998888877888898888 456689999999999999998876
Q ss_pred CC
Q 047325 314 DG 315 (368)
Q Consensus 314 ~~ 315 (368)
.-
T Consensus 354 ~v 355 (398)
T KOG0771|consen 354 AV 355 (398)
T ss_pred ee
Confidence 54
No 200
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.78 E-value=4.8e-18 Score=139.57 Aligned_cols=169 Identities=18% Similarity=0.299 Sum_probs=132.6
Q ss_pred ceecccCCCCCeeEEEEe--CCEEEEEeCCCeEEEEeecCCCccccccCCccccceeeeeccCCCCceeEecccceeeee
Q 047325 74 EFCGFKASSGLVKAIVIS--GEKIFTGHQDGKIRVWKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWI 151 (368)
Q Consensus 74 ~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (368)
....+.+|.+.|+++.|+ |.+|++|+.|-.+.|||....+.......
T Consensus 42 lE~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~T------------------------------- 90 (758)
T KOG1310|consen 42 LEAELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSIST------------------------------- 90 (758)
T ss_pred hhhhhccccceecceeecCCCCEEeecCCcceEEeecchhcceeeeeec-------------------------------
Confidence 345688999999999998 89999999999999999886554443333
Q ss_pred ecCCCEeEEEEcC--CCCEEEEEeCCCcEEEEEccCC----------eEEEEeecCCCceEEEEeCCCC--eEEEEcCCC
Q 047325 152 RHSDAVSCMSLDQ--DCGLLYTASWDRTFKVWRISDS----------KCLESVSAHDDAVNSVVSSSEG--LIFTGSADG 217 (368)
Q Consensus 152 ~~~~~v~~~~~~~--~~~~l~~~~~d~~i~iwd~~~~----------~~~~~~~~~~~~v~~~~~~~~~--~l~~~~~dg 217 (368)
||...|.++.|-| +...+++|..|..|+++|+.+. +....+..|...|..++..|++ .+.++++||
T Consensus 91 gHtaNIFsvKFvP~tnnriv~sgAgDk~i~lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDG 170 (758)
T KOG1310|consen 91 GHTANIFSVKFVPYTNNRIVLSGAGDKLIKLFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDG 170 (758)
T ss_pred ccccceeEEeeeccCCCeEEEeccCcceEEEEecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCc
Confidence 4999999999999 5678999999999999999752 3455566788999999999988 899999999
Q ss_pred eEEEEEcCCCCCCc----ccccceeeccccccEEEEEEcCC-CCEEEEecCCCcEEEEeCC
Q 047325 218 TVKVWKREQHGKGT----KHSLAQTLLKQECAVTALVVSSS-RSIVYCGSSDGLVNFWERE 273 (368)
Q Consensus 218 ~i~i~d~~~~~~~~----~~~~~~~~~~~~~~i~~~~~~~~-~~~l~~~~~dg~i~i~d~~ 273 (368)
+|+-+|+|...... ....+......--...++..+|. ..+|++|+.|-..++||.+
T Consensus 171 tirQyDiREph~c~p~~~~~~~l~ny~~~lielk~ltisp~rp~~laVGgsdpfarLYD~R 231 (758)
T KOG1310|consen 171 TIRQYDIREPHVCNPDEDCPSILVNYNPQLIELKCLTISPSRPYYLAVGGSDPFARLYDRR 231 (758)
T ss_pred ceeeecccCCccCCccccccHHHHHhchhhheeeeeeecCCCCceEEecCCCchhhhhhhh
Confidence 99999999753211 01111112222345678899994 5689999999999999965
No 201
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.78 E-value=3.4e-17 Score=129.31 Aligned_cols=248 Identities=13% Similarity=0.084 Sum_probs=171.7
Q ss_pred cccCCCCCeeEEEEe--CCEEEEEeCCCeEEEEeecCCCccccccCCccccceeeeeccCCCCceeEecccceeeeeecC
Q 047325 77 GFKASSGLVKAIVIS--GEKIFTGHQDGKIRVWKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHS 154 (368)
Q Consensus 77 ~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (368)
.+.+|.+.|+++.|+ +++|++|+.|..+++|+++..-.....+.- . + .-..|.
T Consensus 51 D~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI--~-----------------~------~~~~H~ 105 (609)
T KOG4227|consen 51 DVREHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPI--G-----------------V------MEHPHR 105 (609)
T ss_pred hhhhhccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCc--e-----------------e------ccCccc
Confidence 356899999999998 789999999999999998643211110000 0 0 001177
Q ss_pred CCEeEEEEcCCCCEEEEEeCCCcEEEEEccCCeEEEEeec--CCCceEEEEeCCCC-eEEEEcCCCeEEEEEcCCCCCCc
Q 047325 155 DAVSCMSLDQDCGLLYTASWDRTFKVWRISDSKCLESVSA--HDDAVNSVVSSSEG-LIFTGSADGTVKVWKREQHGKGT 231 (368)
Q Consensus 155 ~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~--~~~~v~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~ 231 (368)
..|.|++|...+..+++|+.+++|.+.|+++.+.+..+.. ..+.|..+..+|.. .+++.+.++.|.+||.+......
T Consensus 106 SNIF~L~F~~~N~~~~SG~~~~~VI~HDiEt~qsi~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~ 185 (609)
T KOG4227|consen 106 SNIFSLEFDLENRFLYSGERWGTVIKHDIETKQSIYVANENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNPI 185 (609)
T ss_pred cceEEEEEccCCeeEecCCCcceeEeeecccceeeeeecccCcccceeecccCCCCceEEEEecCceEEEEeccCCCCCC
Confidence 8999999999999999999999999999999998887753 23589999999977 99999999999999998754211
Q ss_pred ccccceeeccccccEEEEEEcCCC-CEEEEecCCCcEEEEeCCCccccceeee---ccce-----EEEEEEeCCCEEEEe
Q 047325 232 KHSLAQTLLKQECAVTALVVSSSR-SIVYCGSSDGLVNFWEREKQLSHGGVLK---GHKL-----AVLCLAAAGKLVFSG 302 (368)
Q Consensus 232 ~~~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~---~~~~-----~~~~~~~~~~~l~~~ 302 (368)
..............+.|+|.. .+|++.+..+-+-+||.+.+........ +-+. --.-|+++|..+.+-
T Consensus 186 ---~~~~~AN~~~~F~t~~F~P~~P~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msi 262 (609)
T KOG4227|consen 186 ---SLVLPANSGKNFYTAEFHPETPALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSI 262 (609)
T ss_pred ---ceeeecCCCccceeeeecCCCceeEEeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCeehhh
Confidence 122333455667888999954 5788888899999999987654432211 1111 124567788877776
Q ss_pred eCCCeEEEEecCCCceeeeEeeeccc-------cCeeEEEEecCCeeeecCCcceEEEEEeeCCcccccccC
Q 047325 303 SADKTICVWRRDGAIHTCLSVLTGHT-------GPVKCLAVEEDRDSSSSTSSCAQRWIVYSGSLDKSDDDV 367 (368)
Q Consensus 303 ~~dg~i~iw~~~~~~~~~~~~~~~h~-------~~v~~l~~~~~~~~~~~~~~~~~~w~l~sg~~D~~v~i~ 367 (368)
-.-..-.+||+-... -++..+. |. ..+.+++|..|.. ++||+.|-.|.+|
T Consensus 263 RR~~~P~~~D~~S~R-~~V~k~D-~N~~GY~N~~T~KS~~F~~D~~-------------v~tGSD~~~i~~W 319 (609)
T KOG4227|consen 263 RRGKCPLYFDFISQR-CFVLKSD-HNPNGYCNIKTIKSMTFIDDYT-------------VATGSDHWGIHIW 319 (609)
T ss_pred hccCCCEEeeeeccc-ceeEecc-CCCCcceeeeeeeeeeeeccee-------------eeccCcccceEEE
Confidence 655556677776531 1222222 22 2477888887765 4555555555555
No 202
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.77 E-value=5.7e-19 Score=151.67 Aligned_cols=242 Identities=20% Similarity=0.339 Sum_probs=182.4
Q ss_pred eecccCCCCCeeEEEEe--CCEEEEEeCCCeEEEEeecCCCccccccCCccccceeeeeccCCCCceeEecccceeeeee
Q 047325 75 FCGFKASSGLVKAIVIS--GEKIFTGHQDGKIRVWKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIR 152 (368)
Q Consensus 75 ~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (368)
+..+.+|...|+|..|+ |.++++|+.|..++||..++..+..... |
T Consensus 183 ikrLlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~lAs~r--------------------------------G 230 (1113)
T KOG0644|consen 183 IKRLLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETARCLASCR--------------------------------G 230 (1113)
T ss_pred HHHHHhhhhheeeeeeccccceEeecCccceeeeeeccchhhhccCC--------------------------------C
Confidence 44577999999999998 9999999999999999988877544433 4
Q ss_pred cCCCEeEEEEcCCCCEEEEEeCCCcEEEEEccCCeEEEEeecCCCceEEEEeCCCCeEEEEcCCCeEEEEEcCCCCCCcc
Q 047325 153 HSDAVSCMSLDQDCGLLYTASWDRTFKVWRISDSKCLESVSAHDDAVNSVVSSSEGLIFTGSADGTVKVWKREQHGKGTK 232 (368)
Q Consensus 153 ~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~ 232 (368)
|...|+.++.+.++.++++++.|..|++|.+..+.++..+.+|++.|++++|+|-. +.+.||++++||.+-.....
T Consensus 231 hs~ditdlavs~~n~~iaaaS~D~vIrvWrl~~~~pvsvLrghtgavtaiafsP~~---sss~dgt~~~wd~r~~~~~y- 306 (1113)
T KOG0644|consen 231 HSGDITDLAVSSNNTMIAAASNDKVIRVWRLPDGAPVSVLRGHTGAVTAIAFSPRA---SSSDDGTCRIWDARLEPRIY- 306 (1113)
T ss_pred CccccchhccchhhhhhhhcccCceEEEEecCCCchHHHHhccccceeeeccCccc---cCCCCCceEecccccccccc-
Confidence 99999999999999999999999999999999999999999999999999999964 77889999999998321101
Q ss_pred cccceeeccccccEEEEEEcCCCCEEEEecCCCcEEEEeCCCccccceeeeccceEEEEEEeCCCEEEEeeCCCeEEEEe
Q 047325 233 HSLAQTLLKQECAVTALVVSSSRSIVYCGSSDGLVNFWEREKQLSHGGVLKGHKLAVLCLAAAGKLVFSGSADKTICVWR 312 (368)
Q Consensus 233 ~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iw~ 312 (368)
.+..........+.++.|..++.-+++++.|+.-..|.+......... -..+...+-...+.+++-.+-.+++|+
T Consensus 307 -~prp~~~~~~~~~~s~~~~~~~~~f~Tgs~d~ea~n~e~~~l~~~~~~----lif~t~ssd~~~~~~~ar~~~~~~vwn 381 (1113)
T KOG0644|consen 307 -VPRPLKFTEKDLVDSILFENNGDRFLTGSRDGEARNHEFEQLAWRSNL----LIFVTRSSDLSSIVVTARNDHRLCVWN 381 (1113)
T ss_pred -CCCCCCcccccceeeeeccccccccccccCCcccccchhhHhhhhccc----eEEEeccccccccceeeeeeeEeeeee
Confidence 111111223356777888888899999999999888876532111000 001111111235677777888999998
Q ss_pred cCCCceeeeEeeeccccCeeEEEEecCCeeeec---CCcceEEEEEeeCC
Q 047325 313 RDGAIHTCLSVLTGHTGPVKCLAVEEDRDSSSS---TSSCAQRWIVYSGS 359 (368)
Q Consensus 313 ~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~---~~~~~~~w~l~sg~ 359 (368)
+.++ .....+.+|...+..|.++|-...++- -++...+|.++-|.
T Consensus 382 l~~g--~l~H~l~ghsd~~yvLd~Hpfn~ri~msag~dgst~iwdi~eg~ 429 (1113)
T KOG0644|consen 382 LYTG--QLLHNLMGHSDEVYVLDVHPFNPRIAMSAGYDGSTIIWDIWEGI 429 (1113)
T ss_pred cccc--hhhhhhcccccceeeeeecCCCcHhhhhccCCCceEeeecccCC
Confidence 8776 667778899999999999998765442 24556667766554
No 203
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.76 E-value=1.1e-15 Score=132.54 Aligned_cols=258 Identities=17% Similarity=0.257 Sum_probs=169.4
Q ss_pred ecCC-EEEEccCCCcEEEEcCCcc--eecccCCCCCeeEEEEe---C--CEEEEEeCCCeEEEEeecCCCccccccCCcc
Q 047325 52 ASKD-LLYTGSDSKNIRVWKNLKE--FCGFKASSGLVKAIVIS---G--EKIFTGHQDGKIRVWKISPKNQSVHKRAGTL 123 (368)
Q Consensus 52 ~~~~-~l~s~~~dg~i~iw~~~~~--~~~~~~~~~~v~~~~~~---~--~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~ 123 (368)
|+++ ..+-+..+..|.||...++ +..+..|..+++.+.+. . .++++++.||.|++||...+...........
T Consensus 24 fSnD~k~l~~~~~~~V~VyS~~Tg~~i~~l~~~~a~l~s~~~~~~~~~~~~~~~~sl~G~I~vwd~~~~~Llkt~~~~~~ 103 (792)
T KOG1963|consen 24 FSNDAKFLFLCTGNFVKVYSTATGECITSLEDHTAPLTSVIVLPSSENANYLIVCSLDGTIRVWDWSDGELLKTFDNNLP 103 (792)
T ss_pred cccCCcEEEEeeCCEEEEEecchHhhhhhcccccCccceeeecCCCccceEEEEEecCccEEEecCCCcEEEEEEecCCc
Confidence 4544 2233444568999988755 44678899999998887 2 4778999999999999877665433222110
Q ss_pred ccce-----------eeeec----------cCC--------------------------CCceeE---------------
Q 047325 124 PTLK-----------DIFKS----------SIK--------------------------PSNYIE--------------- 141 (368)
Q Consensus 124 ~~~~-----------~~~~~----------~~~--------------------------~~~~~~--------------- 141 (368)
.... ..+.. ..+ +.....
T Consensus 104 v~~~~~~~~~a~~s~~~~~s~~~~~~~~~~s~~~~~q~~~~~~~t~~~~~~d~~~~~~~~~~I~~~~~ge~~~i~~~~~~ 183 (792)
T KOG1963|consen 104 VHALVYKPAQADISANVYVSVEDYSILTTFSKKLSKQSSRFVLATFDSAKGDFLKEHQEPKSIVDNNSGEFKGIVHMCKI 183 (792)
T ss_pred eeEEEechhHhCccceeEeecccceeeeecccccccceeeeEeeeccccchhhhhhhcCCccEEEcCCceEEEEEEeeeE
Confidence 0000 00000 000 000000
Q ss_pred ----ecccce-----eeeeecCCCEeEEEEcCCCCEEEEEeCCCcEEEEEccC----CeEEEEeecCCCceEEEEeCCCC
Q 047325 142 ----VRRHRT-----ALWIRHSDAVSCMSLDQDCGLLYTASWDRTFKVWRISD----SKCLESVSAHDDAVNSVVSSSEG 208 (368)
Q Consensus 142 ----~~~~~~-----~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~----~~~~~~~~~~~~~v~~~~~~~~~ 208 (368)
...+.. ..-..|...+++.+++|++++++++..||.|.+|.--. ......+.-|...|.++.|+++|
T Consensus 184 ~~~~v~~~~~~~~~~~~~~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~~L~fS~~G 263 (792)
T KOG1963|consen 184 HIYFVPKHTKHTSSRDITVHHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDEVNSLSFSSDG 263 (792)
T ss_pred EEEEecccceeeccchhhhhhcccceeEEeccccceEEEeccCCcEEEEeccccccccccceEEEecccccceeEEecCC
Confidence 000000 00023666789999999999999999999999996432 12345667788999999999999
Q ss_pred -eEEEEcCCCeEEEEEcCCCCCCcccccceeeccccccEEEEEEcCCCCEEEEecCCCcEEEEeCCCccccce---eee-
Q 047325 209 -LIFTGSADGTVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSSSRSIVYCGSSDGLVNFWEREKQLSHGG---VLK- 283 (368)
Q Consensus 209 -~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~---~~~- 283 (368)
+|++|+..+.+.+|.+.+++ .+.+..-.++|..+.++||+.+.+....|+.|.+....+...... ...
T Consensus 264 ~~LlSGG~E~VLv~Wq~~T~~-------kqfLPRLgs~I~~i~vS~ds~~~sl~~~DNqI~li~~~dl~~k~tIsgi~~~ 336 (792)
T KOG1963|consen 264 AYLLSGGREGVLVLWQLETGK-------KQFLPRLGSPILHIVVSPDSDLYSLVLEDNQIHLIKASDLEIKSTISGIKPP 336 (792)
T ss_pred ceEeecccceEEEEEeecCCC-------cccccccCCeeEEEEEcCCCCeEEEEecCceEEEEeccchhhhhhccCccCC
Confidence 99999999999999998763 234455678899999999999999999999999987643221110 000
Q ss_pred ------ccc--eEEEEEEeCCCEEEEeeCCCeEEEEecCCC
Q 047325 284 ------GHK--LAVLCLAAAGKLVFSGSADKTICVWRRDGA 316 (368)
Q Consensus 284 ------~~~--~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~ 316 (368)
... ....+++|..+.++-.+..|.|.+||+-+.
T Consensus 337 ~~~~k~~~~~l~t~~~idpr~~~~vln~~~g~vQ~ydl~td 377 (792)
T KOG1963|consen 337 TPSTKTRPQSLTTGVSIDPRTNSLVLNGHPGHVQFYDLYTD 377 (792)
T ss_pred CccccccccccceeEEEcCCCCceeecCCCceEEEEecccc
Confidence 011 223556665667777778888888887543
No 204
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.76 E-value=3.1e-16 Score=140.42 Aligned_cols=222 Identities=13% Similarity=0.232 Sum_probs=152.4
Q ss_pred EcCCc-ceecccCCCCCeeEEEEe---CCEEEEEeCCCeEEEEeecCCCccccccCCccccceeeeeccCCCCceeEecc
Q 047325 69 WKNLK-EFCGFKASSGLVKAIVIS---GEKIFTGHQDGKIRVWKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRR 144 (368)
Q Consensus 69 w~~~~-~~~~~~~~~~~v~~~~~~---~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 144 (368)
|++.. .+..+..|...+..++.+ +.++++|+.||+|++|+...-.......
T Consensus 1034 W~p~G~lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~------------------------- 1088 (1431)
T KOG1240|consen 1034 WNPRGILVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSA------------------------- 1088 (1431)
T ss_pred CCccceEeehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCccee-------------------------
Confidence 44442 345677889999988887 4799999999999999987543211000
Q ss_pred cceeeeeecCCCEeEEEEcCCCCEEEEEeCCCcEEEEEccCC--e-----EEEEeecC-CCceEEE-EeCCC--C-eEEE
Q 047325 145 HRTALWIRHSDAVSCMSLDQDCGLLYTASWDRTFKVWRISDS--K-----CLESVSAH-DDAVNSV-VSSSE--G-LIFT 212 (368)
Q Consensus 145 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~--~-----~~~~~~~~-~~~v~~~-~~~~~--~-~l~~ 212 (368)
.....+......+.++...+.++.+|+++.||.|++.++... + .......+ .+.+.++ ++... . .++.
T Consensus 1089 rS~ltys~~~sr~~~vt~~~~~~~~Av~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy 1168 (1431)
T KOG1240|consen 1089 RSELTYSPEGSRVEKVTMCGNGDQFAVSTKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVY 1168 (1431)
T ss_pred eeeEEEeccCCceEEEEeccCCCeEEEEcCCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEE
Confidence 011122225678999999999999999999999999998762 1 11111112 2334443 33322 2 6788
Q ss_pred EcCCCeEEEEEcCCCCCCcccccceeeccccccEEEEEEcCCCCEEEEecCCCcEEEEeCCCccccceeeeccceEE--E
Q 047325 213 GSADGTVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSSSRSIVYCGSSDGLVNFWEREKQLSHGGVLKGHKLAV--L 290 (368)
Q Consensus 213 ~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~--~ 290 (368)
+...+.|..||+++... ..........+.|++++.+|.+++++.|+..|.+.+||++-+........++..++ +
T Consensus 1169 ~T~~~~iv~~D~r~~~~----~w~lk~~~~hG~vTSi~idp~~~WlviGts~G~l~lWDLRF~~~i~sw~~P~~~~i~~v 1244 (1431)
T KOG1240|consen 1169 ATDLSRIVSWDTRMRHD----AWRLKNQLRHGLVTSIVIDPWCNWLVIGTSRGQLVLWDLRFRVPILSWEHPARAPIRHV 1244 (1431)
T ss_pred EEeccceEEecchhhhh----HHhhhcCccccceeEEEecCCceEEEEecCCceEEEEEeecCceeecccCcccCCcceE
Confidence 88899999999987533 11223344567899999999999999999999999999997766655555555555 3
Q ss_pred EEEe---CCCEEEEee--CCCeEEEEecCCCcee
Q 047325 291 CLAA---AGKLVFSGS--ADKTICVWRRDGAIHT 319 (368)
Q Consensus 291 ~~~~---~~~~l~~~~--~dg~i~iw~~~~~~~~ 319 (368)
+++| .....++++ ..+.|.+|++.++..+
T Consensus 1245 ~~~~~~~~~S~~vs~~~~~~nevs~wn~~~g~~~ 1278 (1431)
T KOG1240|consen 1245 WLCPTYPQESVSVSAGSSSNNEVSTWNMETGLRQ 1278 (1431)
T ss_pred EeeccCCCCceEEEecccCCCceeeeecccCcce
Confidence 4444 234555444 5778999999887443
No 205
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.76 E-value=2.4e-16 Score=124.31 Aligned_cols=261 Identities=12% Similarity=0.129 Sum_probs=185.9
Q ss_pred CcCCcEEEEEec--CC--EEEEccCCCcEEEEcCCcc--------eecccCCCCCeeEEEEeCCEEEEEeCCCeEEEEee
Q 047325 42 REEGHIYSLAAS--KD--LLYTGSDSKNIRVWKNLKE--------FCGFKASSGLVKAIVISGEKIFTGHQDGKIRVWKI 109 (368)
Q Consensus 42 ~h~~~i~~~~~~--~~--~l~s~~~dg~i~iw~~~~~--------~~~~~~~~~~v~~~~~~~~~l~s~~~dg~i~vw~~ 109 (368)
.....|..++|. ++ .+...+.|..+......+. ........++|..+...+..|++|-.+|.+.+|..
T Consensus 53 ~~~~ris~l~~~~d~~tevl~~r~~~~~~~~~~~~E~~~~s~~~~~~~~~l~~~~I~gl~~~dg~Litc~~sG~l~~~~~ 132 (412)
T KOG3881|consen 53 DELDRISSLLFGVDGETEVLNARSADDDLPKFVIEEFEISSSLDDAKTVSLGTKSIKGLKLADGTLITCVSSGNLQVRHD 132 (412)
T ss_pred chhhhhhhheeecCCceeEeeccccCcccccccccCCccccccccccccccccccccchhhcCCEEEEEecCCcEEEEec
Confidence 345667777775 33 5555546666666655432 22344567788888888899999999999999998
Q ss_pred cCCCccccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcCCCC-EEEEEeCC--CcEEEEEccCC
Q 047325 110 SPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCG-LLYTASWD--RTFKVWRISDS 186 (368)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~d--~~i~iwd~~~~ 186 (368)
..+..-.... ........+..+.-++... .+++|+.. ..+.+||+++.
T Consensus 133 k~~d~hss~l-----------------------------~~la~g~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~ 183 (412)
T KOG3881|consen 133 KSGDLHSSKL-----------------------------IKLATGPGLYDVRQTDTDPYIVATGGKENINELKIWDLEQS 183 (412)
T ss_pred cCCccccccc-----------------------------eeeecCCceeeeccCCCCCceEecCchhcccceeeeecccc
Confidence 8654210000 0000223444555555433 56668888 88999999988
Q ss_pred eEEEEeecC---------CCceEEEEeCCC--C-eEEEEcCCCeEEEEEcCCCCCCcccccceeeccccccEEEEEEcCC
Q 047325 187 KCLESVSAH---------DDAVNSVVSSSE--G-LIFTGSADGTVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSSS 254 (368)
Q Consensus 187 ~~~~~~~~~---------~~~v~~~~~~~~--~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 254 (368)
+.+..-+.- .-.++++.|.+. . .|++++.-+.+++||.+.+. +++..+.-.+.+++++...|+
T Consensus 184 ~qiw~aKNvpnD~L~LrVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qR-----RPV~~fd~~E~~is~~~l~p~ 258 (412)
T KOG3881|consen 184 KQIWSAKNVPNDRLGLRVPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQR-----RPVAQFDFLENPISSTGLTPS 258 (412)
T ss_pred eeeeeccCCCCccccceeeeeeccceecCCCCCceEEEEecceeEEEecCcccC-----cceeEeccccCcceeeeecCC
Confidence 665544321 124567778776 4 99999999999999998543 467777778899999999999
Q ss_pred CCEEEEecCCCcEEEEeCCCccccceeeeccceEEEEEEe--CCCEEEEeeCCCeEEEEecCCCceeeeEeeeccccCee
Q 047325 255 RSIVYCGSSDGLVNFWEREKQLSHGGVLKGHKLAVLCLAA--AGKLVFSGSADKTICVWRRDGAIHTCLSVLTGHTGPVK 332 (368)
Q Consensus 255 ~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~ 332 (368)
++++++|..-|.+..||++.+......+.+-.+.+.++.. ..++|++++-|..|||+|+.+. .++.... -...++
T Consensus 259 gn~Iy~gn~~g~l~~FD~r~~kl~g~~~kg~tGsirsih~hp~~~~las~GLDRyvRIhD~ktr--kll~kvY-vKs~lt 335 (412)
T KOG3881|consen 259 GNFIYTGNTKGQLAKFDLRGGKLLGCGLKGITGSIRSIHCHPTHPVLASCGLDRYVRIHDIKTR--KLLHKVY-VKSRLT 335 (412)
T ss_pred CcEEEEecccchhheecccCceeeccccCCccCCcceEEEcCCCceEEeeccceeEEEeecccc--hhhhhhh-hhcccc
Confidence 9999999999999999999998887778888888877765 5669999999999999999874 2222211 234466
Q ss_pred EEEEecC
Q 047325 333 CLAVEED 339 (368)
Q Consensus 333 ~l~~~~~ 339 (368)
.|.+.++
T Consensus 336 ~il~~~~ 342 (412)
T KOG3881|consen 336 FILLRDD 342 (412)
T ss_pred EEEecCC
Confidence 6666544
No 206
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.76 E-value=9.1e-17 Score=131.82 Aligned_cols=167 Identities=20% Similarity=0.288 Sum_probs=133.8
Q ss_pred CCEEEEEeCCCcEEEEEccCCeEEEEeecCCCceEEEEeCCCC-eEEEEcCCCeEEEEEcCCCCCCcccccceeeccccc
Q 047325 166 CGLLYTASWDRTFKVWRISDSKCLESVSAHDDAVNSVVSSSEG-LIFTGSADGTVKVWKREQHGKGTKHSLAQTLLKQEC 244 (368)
Q Consensus 166 ~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~ 244 (368)
...|+.++.||.+.+.+ +.++....+.+|.+.+.+-.|+|+| -|+++++||.|++|..... ....+.....
T Consensus 75 ~d~~~i~s~DGkf~il~-k~~rVE~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWSrsGM-------LRStl~Q~~~ 146 (737)
T KOG1524|consen 75 SDTLLICSNDGRFVILN-KSARVERSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWSRSGM-------LRSTVVQNEE 146 (737)
T ss_pred cceEEEEcCCceEEEec-ccchhhhhhhhhhhhhhhcccCCCCceeeeecCCceEEEEeccch-------HHHHHhhcCc
Confidence 35788889999999988 4678888889999999999999999 9999999999999986532 3344556678
Q ss_pred cEEEEEEcCCCCEEEEecCCCcEEEEeCCCccccceeeeccceEEEEEEeC--CCEEEEeeCCCeEEEEecCCCceeeeE
Q 047325 245 AVTALVVSSSRSIVYCGSSDGLVNFWEREKQLSHGGVLKGHKLAVLCLAAA--GKLVFSGSADKTICVWRRDGAIHTCLS 322 (368)
Q Consensus 245 ~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~~~~~dg~i~iw~~~~~~~~~~~ 322 (368)
+|.|++|.|+.+.++-+. .+.+.|=.+.....+ ...+.|.+-+++++++ .+++++|++|-..+|||-.. ..++
T Consensus 147 ~v~c~~W~p~S~~vl~c~-g~h~~IKpL~~n~k~-i~WkAHDGiiL~~~W~~~s~lI~sgGED~kfKvWD~~G---~~Lf 221 (737)
T KOG1524|consen 147 SIRCARWAPNSNSIVFCQ-GGHISIKPLAANSKI-IRWRAHDGLVLSLSWSTQSNIIASGGEDFRFKIWDAQG---ANLF 221 (737)
T ss_pred eeEEEEECCCCCceEEec-CCeEEEeecccccce-eEEeccCcEEEEeecCccccceeecCCceeEEeecccC---cccc
Confidence 899999999877655543 355777666654444 4667899999888874 78999999999999997544 5677
Q ss_pred eeeccccCeeEEEEecCCeeeec
Q 047325 323 VLTGHTGPVKCLAVEEDRDSSSS 345 (368)
Q Consensus 323 ~~~~h~~~v~~l~~~~~~~~~~~ 345 (368)
.-..|.-+|++++|+|+..++..
T Consensus 222 ~S~~~ey~ITSva~npd~~~~v~ 244 (737)
T KOG1524|consen 222 TSAAEEYAITSVAFNPEKDYLLW 244 (737)
T ss_pred cCChhccceeeeeeccccceeee
Confidence 77889999999999999655443
No 207
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.73 E-value=1.2e-14 Score=122.03 Aligned_cols=268 Identities=15% Similarity=0.204 Sum_probs=159.0
Q ss_pred eeeeccCcCCcEEEEEec--CCEEEEc-cCCCcEEEEcCCc-c-eeccc--CCCCCeeEEEEe--CCEEEEEeC-CCeEE
Q 047325 36 LIGSLVREEGHIYSLAAS--KDLLYTG-SDSKNIRVWKNLK-E-FCGFK--ASSGLVKAIVIS--GEKIFTGHQ-DGKIR 105 (368)
Q Consensus 36 ~~~~~~~h~~~i~~~~~~--~~~l~s~-~~dg~i~iw~~~~-~-~~~~~--~~~~~v~~~~~~--~~~l~s~~~-dg~i~ 105 (368)
++.++. +.+....++++ +++|+++ ..++.|.+|++.. . +.... ...+....+.++ ++++++++. ++.|.
T Consensus 27 ~~~~~~-~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~~~~~p~~i~~~~~g~~l~v~~~~~~~v~ 105 (330)
T PRK11028 27 LLQVVD-VPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAESPLPGSPTHISTDHQGRFLFSASYNANCVS 105 (330)
T ss_pred eeeEEe-cCCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeeecCCCCceEEEECCCCCEEEEEEcCCCeEE
Confidence 334443 23445566776 4466544 5688999998752 1 21111 122345677777 777777764 89999
Q ss_pred EEeecCCCccccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcCCCCEEEEEe-CCCcEEEEEcc
Q 047325 106 VWKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCGLLYTAS-WDRTFKVWRIS 184 (368)
Q Consensus 106 vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d~~i~iwd~~ 184 (368)
+|++++......... .. .+.....+++++|+++++++++ .++.|.+||+.
T Consensus 106 v~~~~~~g~~~~~~~----------------------------~~-~~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~ 156 (330)
T PRK11028 106 VSPLDKDGIPVAPIQ----------------------------II-EGLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLS 156 (330)
T ss_pred EEEECCCCCCCCcee----------------------------ec-cCCCcccEeEeCCCCCEEEEeeCCCCEEEEEEEC
Confidence 999974321111000 00 0223456788999999886655 56899999997
Q ss_pred CCeEEEE-----ee-cCCCceEEEEeCCCC-eEEEEcC-CCeEEEEEcCCCCCCcccccceeecc------ccccEEEEE
Q 047325 185 DSKCLES-----VS-AHDDAVNSVVSSSEG-LIFTGSA-DGTVKVWKREQHGKGTKHSLAQTLLK------QECAVTALV 250 (368)
Q Consensus 185 ~~~~~~~-----~~-~~~~~v~~~~~~~~~-~l~~~~~-dg~i~i~d~~~~~~~~~~~~~~~~~~------~~~~i~~~~ 250 (368)
+...+.. .. ........+.|+|++ +++++.. ++.|.+|+++.... .......+.. .......+.
T Consensus 157 ~~g~l~~~~~~~~~~~~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~--~~~~~~~~~~~p~~~~~~~~~~~i~ 234 (330)
T PRK11028 157 DDGHLVAQEPAEVTTVEGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHG--EIECVQTLDMMPADFSDTRWAADIH 234 (330)
T ss_pred CCCcccccCCCceecCCCCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCC--CEEEEEEEecCCCcCCCCccceeEE
Confidence 6332211 11 123345789999999 6666665 89999999974211 1111111111 112234688
Q ss_pred EcCCCCEEEEecC-CCcEEEEeCCCcccc---ce-eeeccceEEEEEEeCCCEEEEeeC-CCeEEEEecCCC--ceeeeE
Q 047325 251 VSSSRSIVYCGSS-DGLVNFWEREKQLSH---GG-VLKGHKLAVLCLAAAGKLVFSGSA-DKTICVWRRDGA--IHTCLS 322 (368)
Q Consensus 251 ~~~~~~~l~~~~~-dg~i~i~d~~~~~~~---~~-~~~~~~~~~~~~~~~~~~l~~~~~-dg~i~iw~~~~~--~~~~~~ 322 (368)
++|++++++++.. ++.|.+|++...... .. ...+....-..+++++++|+++.. +++|.+|+++.. ....+.
T Consensus 235 ~~pdg~~lyv~~~~~~~I~v~~i~~~~~~~~~~~~~~~~~~p~~~~~~~dg~~l~va~~~~~~v~v~~~~~~~g~l~~~~ 314 (330)
T PRK11028 235 ITPDGRHLYACDRTASLISVFSVSEDGSVLSFEGHQPTETQPRGFNIDHSGKYLIAAGQKSHHISVYEIDGETGLLTELG 314 (330)
T ss_pred ECCCCCEEEEecCCCCeEEEEEEeCCCCeEEEeEEEeccccCCceEECCCCCEEEEEEccCCcEEEEEEcCCCCcEEEcc
Confidence 9999999998864 689999998643211 11 111112234678899999998775 899999988643 233344
Q ss_pred eeeccccCeeEEEE
Q 047325 323 VLTGHTGPVKCLAV 336 (368)
Q Consensus 323 ~~~~h~~~v~~l~~ 336 (368)
.+.. .....+++|
T Consensus 315 ~~~~-g~~P~~~~~ 327 (330)
T PRK11028 315 RYAV-GQGPMWVSV 327 (330)
T ss_pred cccc-CCCceEEEE
Confidence 3332 334455554
No 208
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.73 E-value=1.4e-17 Score=134.14 Aligned_cols=272 Identities=17% Similarity=0.184 Sum_probs=199.8
Q ss_pred EEEe--cCCEEEEccCCCcEEEEcCCcceecccC-CCCCeeEEEEe-CCEEEEEeCCCeEEEEeecCCCccccccCCccc
Q 047325 49 SLAA--SKDLLYTGSDSKNIRVWKNLKEFCGFKA-SSGLVKAIVIS-GEKIFTGHQDGKIRVWKISPKNQSVHKRAGTLP 124 (368)
Q Consensus 49 ~~~~--~~~~l~s~~~dg~i~iw~~~~~~~~~~~-~~~~v~~~~~~-~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~ 124 (368)
.+.+ +|..|+.|+.-|.|-.+|..+....+.. -...|.++.|- ...+++......+.|||-...+.-...
T Consensus 134 ~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~Ei~v~Etv~Dv~~LHneq~~AVAQK~y~yvYD~~GtElHClk------ 207 (545)
T KOG1272|consen 134 HLDYTRNGRHLLLGGRKGHLAAFDWVTKKLHFEINVMETVRDVTFLHNEQFFAVAQKKYVYVYDNNGTELHCLK------ 207 (545)
T ss_pred eeeecCCccEEEecCCccceeeeecccceeeeeeehhhhhhhhhhhcchHHHHhhhhceEEEecCCCcEEeehh------
Confidence 4555 4668889999999999997754333322 24457777776 555555556778999986644321111
Q ss_pred cceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcCCCCEEEEEeCCCcEEEEEccCCeEEEEeecCCCceEEEEe
Q 047325 125 TLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCGLLYTASWDRTFKVWRISDSKCLESVSAHDDAVNSVVS 204 (368)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~ 204 (368)
....|..+.|.|..-+|++++..|.++--|+.+|+.+..+....+.+..++-
T Consensus 208 ----------------------------~~~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~q 259 (545)
T KOG1272|consen 208 ----------------------------RHIRVARLEFLPYHFLLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQ 259 (545)
T ss_pred ----------------------------hcCchhhhcccchhheeeecccCCceEEEeechhhhhHHHHccCCccchhhc
Confidence 2356888999998888999999999999999999999999988899999999
Q ss_pred CCCC-eEEEEcCCCeEEEEEcCCCCCCcccccceeeccccccEEEEEEcCCCCEEEEecCCCcEEEEeCCCccccceeee
Q 047325 205 SSEG-LIFTGSADGTVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSSSRSIVYCGSSDGLVNFWEREKQLSHGGVLK 283 (368)
Q Consensus 205 ~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~ 283 (368)
+|-+ .+-+|..+|+|.+|..... .++..+..|.++|.++++.++|+++++.+.|..++|||++....+.....
T Consensus 260 NP~NaVih~GhsnGtVSlWSP~sk------ePLvKiLcH~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~ql~t~~t 333 (545)
T KOG1272|consen 260 NPYNAVIHLGHSNGTVSLWSPNSK------EPLVKILCHRGPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFYQLHTYRT 333 (545)
T ss_pred CCccceEEEcCCCceEEecCCCCc------chHHHHHhcCCCcceEEECCCCcEEeecccccceeEeeeccccccceeec
Confidence 9988 8899999999999998765 35667788999999999999999999999999999999998776655555
Q ss_pred ccceEEEEEEeCCCEEEEeeCCCeEEEEecC-CCceeeeEeeecc--ccCeeEEEEecCCeeeecCCcceEEEEEeeCCc
Q 047325 284 GHKLAVLCLAAAGKLVFSGSADKTICVWRRD-GAIHTCLSVLTGH--TGPVKCLAVEEDRDSSSSTSSCAQRWIVYSGSL 360 (368)
Q Consensus 284 ~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~-~~~~~~~~~~~~h--~~~v~~l~~~~~~~~~~~~~~~~~~w~l~sg~~ 360 (368)
.|...-++++ .+-+++.+....|.||.=. ......-..+-.| .++|.++.|.|-..+|..+...+..-.|+-|+.
T Consensus 334 p~~a~~ls~S--qkglLA~~~G~~v~iw~d~~~~s~~~~~pYm~H~~~~~V~~l~FcP~EDvLGIGH~~G~tsilVPGsG 411 (545)
T KOG1272|consen 334 PHPASNLSLS--QKGLLALSYGDHVQIWKDALKGSGHGETPYMNHRCGGPVEDLRFCPYEDVLGIGHAGGITSILVPGSG 411 (545)
T ss_pred CCCccccccc--cccceeeecCCeeeeehhhhcCCCCCCcchhhhccCcccccceeccHHHeeeccccCCceeEeccCCC
Confidence 4555445544 3334444555579999421 1111111122223 458999999999998888776655546666765
Q ss_pred cc
Q 047325 361 DK 362 (368)
Q Consensus 361 D~ 362 (368)
|-
T Consensus 412 eP 413 (545)
T KOG1272|consen 412 EP 413 (545)
T ss_pred CC
Confidence 53
No 209
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.73 E-value=1.2e-15 Score=120.91 Aligned_cols=245 Identities=18% Similarity=0.195 Sum_probs=172.2
Q ss_pred CceeeeccCcCCcEEEEEecCC--EEEEccCCCcEEEEcCC--------c------c----eecccCCCCCeeEEEEe--
Q 047325 34 NGLIGSLVREEGHIYSLAASKD--LLYTGSDSKNIRVWKNL--------K------E----FCGFKASSGLVKAIVIS-- 91 (368)
Q Consensus 34 ~~~~~~~~~h~~~i~~~~~~~~--~l~s~~~dg~i~iw~~~--------~------~----~~~~~~~~~~v~~~~~~-- 91 (368)
-+.+..|..|..+|+++.|+++ +||+|+.+|.|.+|... + + ...+.+|...|..++|.
T Consensus 55 V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d 134 (434)
T KOG1009|consen 55 VEYLSSLSRHTRAVNVVRFSPDGELLASGGDGGEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPD 134 (434)
T ss_pred EEEeecccCCcceeEEEEEcCCcCeeeecCCCceEEEEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccCC
Confidence 4567889999999999999866 99999999999999654 1 1 23456899999999998
Q ss_pred CCEEEEEeCCCeEEEEeecCCCccccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcCCCCEEEE
Q 047325 92 GEKIFTGHQDGKIRVWKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCGLLYT 171 (368)
Q Consensus 92 ~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~ 171 (368)
+.++++++.|..+++||+..++..... .+|..-|..++|.|-++++++
T Consensus 135 ~~~l~s~s~dns~~l~Dv~~G~l~~~~--------------------------------~dh~~yvqgvawDpl~qyv~s 182 (434)
T KOG1009|consen 135 SNFLVSGSVDNSVRLWDVHAGQLLAIL--------------------------------DDHEHYVQGVAWDPLNQYVAS 182 (434)
T ss_pred CceeeeeeccceEEEEEeccceeEeec--------------------------------cccccccceeecchhhhhhhh
Confidence 789999999999999999988743332 338899999999999999999
Q ss_pred EeCCCcEEEEEccCCeEEEEee-------------------cCC----CceEEEEeCCCC-eEEEEcC----CC-----e
Q 047325 172 ASWDRTFKVWRISDSKCLESVS-------------------AHD----DAVNSVVSSSEG-LIFTGSA----DG-----T 218 (368)
Q Consensus 172 ~~~d~~i~iwd~~~~~~~~~~~-------------------~~~----~~v~~~~~~~~~-~l~~~~~----dg-----~ 218 (368)
-+.|...+.+++...+.+.... .|+ .....++|+|+| .+++.+. .+ .
T Consensus 183 ~s~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~s~rLfhDeTlksFFrRlsfTPdG~llvtPag~~~~g~~~~~n~ 262 (434)
T KOG1009|consen 183 KSSDRHPEGFSAKLKQVIKRHGLDIMPAKAFNEREGKSTRLFHDETLKSFFRRLSFTPDGSLLVTPAGLFKVGGGVFRNT 262 (434)
T ss_pred hccCcccceeeeeeeeeeeeeeeeEeeecccCCCCcceeeeeecCchhhhhhhcccCCCCcEEEcccceeeeCCceeece
Confidence 9999877777765543332221 011 123456788999 6655432 22 2
Q ss_pred EEEEEcCCCCCCcccccceeeccccccEEEEEEcC------------------CCCEEEEecCCCcEEEEeCCCccccce
Q 047325 219 VKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSS------------------SRSIVYCGSSDGLVNFWEREKQLSHGG 280 (368)
Q Consensus 219 i~i~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~------------------~~~~l~~~~~dg~i~i~d~~~~~~~~~ 280 (368)
.++|+-.... ++...+.....+...+.++| -+-.++.++. ..|++||.++...+..
T Consensus 263 tYvfsrk~l~-----rP~~~lp~~~k~~lavr~~pVy~elrp~~~~~~~~~lpyrlvfaiAt~-~svyvydtq~~~P~~~ 336 (434)
T KOG1009|consen 263 SYVFSRKDLK-----RPAARLPSPKKPALAVRFSPVYYELRPLSSEKFLFVLPYRLVFAIATK-NSVYVYDTQTLEPLAV 336 (434)
T ss_pred eEeecccccc-----CceeecCCCCcceEEEEeeeeEEEeccccccccccccccceEEEEeec-ceEEEeccccccceEE
Confidence 3455443221 23334444444455555544 1224555554 5699999998777666
Q ss_pred eeeccceEEEE--EEeCCCEEEEeeCCCeEEEEecCCC
Q 047325 281 VLKGHKLAVLC--LAAAGKLVFSGSADKTICVWRRDGA 316 (368)
Q Consensus 281 ~~~~~~~~~~~--~~~~~~~l~~~~~dg~i~iw~~~~~ 316 (368)
...-|-..++. ++.||..|+..+.||...+-.++..
T Consensus 337 v~nihy~~iTDiaws~dg~~l~vSS~DGyCS~vtfe~~ 374 (434)
T KOG1009|consen 337 VDNIHYSAITDIAWSDDGSVLLVSSTDGFCSLVTFEPW 374 (434)
T ss_pred EeeeeeeeecceeecCCCcEEEEeccCCceEEEEEcch
Confidence 66667777755 4557899999999999887766543
No 210
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.72 E-value=6.7e-16 Score=121.87 Aligned_cols=216 Identities=12% Similarity=0.165 Sum_probs=162.4
Q ss_pred eeccCcCCcEEEEEecCCEEEEccCCCcEEEEcCCcc------eecccCCCCCeeEEEEe---CCEEEEEeCC--CeEEE
Q 047325 38 GSLVREEGHIYSLAASKDLLYTGSDSKNIRVWKNLKE------FCGFKASSGLVKAIVIS---GEKIFTGHQD--GKIRV 106 (368)
Q Consensus 38 ~~~~~h~~~i~~~~~~~~~l~s~~~dg~i~iw~~~~~------~~~~~~~~~~v~~~~~~---~~~l~s~~~d--g~i~v 106 (368)
.+....+++|..++.....|++|-.+|.+.+|..... +..+..+ ..+..+.-. ...+++|+.. ..+.+
T Consensus 99 ~~~~l~~~~I~gl~~~dg~Litc~~sG~l~~~~~k~~d~hss~l~~la~g-~g~~~~r~~~~~p~Iva~GGke~~n~lki 177 (412)
T KOG3881|consen 99 KTVSLGTKSIKGLKLADGTLITCVSSGNLQVRHDKSGDLHSSKLIKLATG-PGLYDVRQTDTDPYIVATGGKENINELKI 177 (412)
T ss_pred cccccccccccchhhcCCEEEEEecCCcEEEEeccCCccccccceeeecC-CceeeeccCCCCCceEecCchhcccceee
Confidence 3445567778888887778999999999999987622 2222222 334444433 5577889998 89999
Q ss_pred EeecCCCccccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcCC--CCEEEEEeCCCcEEEEEcc
Q 047325 107 WKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQD--CGLLYTASWDRTFKVWRIS 184 (368)
Q Consensus 107 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~d~~i~iwd~~ 184 (368)
||++..++......- +...+.++ -.-.++++.|.+. ...|++++.-+.+++||.+
T Consensus 178 wdle~~~qiw~aKNv--------------pnD~L~Lr---------VPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~ 234 (412)
T KOG3881|consen 178 WDLEQSKQIWSAKNV--------------PNDRLGLR---------VPVWITDIRFLEGSPNYKFATITRYHQVRLYDTR 234 (412)
T ss_pred eecccceeeeeccCC--------------CCccccce---------eeeeeccceecCCCCCceEEEEecceeEEEecCc
Confidence 999988544333221 11111111 2235678889887 7899999999999999998
Q ss_pred CC-eEEEEeecCCCceEEEEeCCCC-eEEEEcCCCeEEEEEcCCCCCCcccccceeeccccccEEEEEEcCCCCEEEEec
Q 047325 185 DS-KCLESVSAHDDAVNSVVSSSEG-LIFTGSADGTVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSSSRSIVYCGS 262 (368)
Q Consensus 185 ~~-~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~ 262 (368)
.+ +++..+...+.++.++...|++ .+++|..-+.+..||++.... ....+.+..+.|+++..+|.++++++++
T Consensus 235 ~qRRPV~~fd~~E~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~kl-----~g~~~kg~tGsirsih~hp~~~~las~G 309 (412)
T KOG3881|consen 235 HQRRPVAQFDFLENPISSTGLTPSGNFIYTGNTKGQLAKFDLRGGKL-----LGCGLKGITGSIRSIHCHPTHPVLASCG 309 (412)
T ss_pred ccCcceeEeccccCcceeeeecCCCcEEEEecccchhheecccCcee-----eccccCCccCCcceEEEcCCCceEEeec
Confidence 65 5788888888999999999999 999999999999999997632 3344778889999999999999999999
Q ss_pred CCCcEEEEeCCCccccceee
Q 047325 263 SDGLVNFWEREKQLSHGGVL 282 (368)
Q Consensus 263 ~dg~i~i~d~~~~~~~~~~~ 282 (368)
-|..++|+|+++.+.+...+
T Consensus 310 LDRyvRIhD~ktrkll~kvY 329 (412)
T KOG3881|consen 310 LDRYVRIHDIKTRKLLHKVY 329 (412)
T ss_pred cceeEEEeecccchhhhhhh
Confidence 99999999999865554433
No 211
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.72 E-value=3.9e-16 Score=116.94 Aligned_cols=251 Identities=15% Similarity=0.180 Sum_probs=157.9
Q ss_pred CcCCcEEEEEecC-CEEEEccCCCcEEEEcCCcceecccCCCCCeeEEEEeCCEEEEEeCCC-eEEEEeecCCCcccccc
Q 047325 42 REEGHIYSLAASK-DLLYTGSDSKNIRVWKNLKEFCGFKASSGLVKAIVISGEKIFTGHQDG-KIRVWKISPKNQSVHKR 119 (368)
Q Consensus 42 ~h~~~i~~~~~~~-~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~v~~~~~~~~~l~s~~~dg-~i~vw~~~~~~~~~~~~ 119 (368)
.|...|+.+..-+ +.|.+-+.|+.+.+|++.... -...|.-.++++.|..--+...+... ..-.++-+.........
T Consensus 54 ~g~~~it~lq~~p~d~l~tqgRd~~L~lw~ia~s~-~i~i~Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D 132 (323)
T KOG0322|consen 54 FGRLFITNLQSIPNDSLDTQGRDPLLILWTIAYSA-FISIHSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQD 132 (323)
T ss_pred hccceeeceeecCCcchhhcCCCceEEEEEccCcc-eEEEeeeeccccccccceeccCCCcchhheecCCcccchhhhhc
Confidence 4566677777655 689999999999999987521 12234455556655533333333222 11122111111100000
Q ss_pred CCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcC-CC--CEEEEEeCCCcEEEEEccCCeEE-------
Q 047325 120 AGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQ-DC--GLLYTASWDRTFKVWRISDSKCL------- 189 (368)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~--~~l~~~~~d~~i~iwd~~~~~~~------- 189 (368)
.+. .. .+.+.... -.+..+.+.|..+.. .+ -++++|.++|.+.+||+.++..+
T Consensus 133 ~g~-~t-------------qv~i~dd~---~~~Klgsvmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~ 195 (323)
T KOG0322|consen 133 GGD-TT-------------QVQIADDS---ERSKLGSVMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSS 195 (323)
T ss_pred cCc-cc-------------eeEccCch---hccccCceeeeeccccccceEEEEEeccCCeEEEEEccCCceeecccccc
Confidence 000 00 00000000 011445677776533 22 36778889999999999987433
Q ss_pred ---EEeecCCCceEEEEeCCCC-eEEEEcCCCeEEEEEcCCCCCCcccccceeeccccccEEEEEEcCCCCEEEEecCCC
Q 047325 190 ---ESVSAHDDAVNSVVSSSEG-LIFTGSADGTVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSSSRSIVYCGSSDG 265 (368)
Q Consensus 190 ---~~~~~~~~~v~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg 265 (368)
.....|..+|.++.+.+.- .=++|+.+..+..|.++...... +......-..-.+..+..-||++.+|+++.|+
T Consensus 196 kv~~~~ash~qpvlsldyas~~~rGisgga~dkl~~~Sl~~s~gsl--q~~~e~~lknpGv~gvrIRpD~KIlATAGWD~ 273 (323)
T KOG0322|consen 196 KVESPNASHKQPVLSLDYASSCDRGISGGADDKLVMYSLNHSTGSL--QIRKEITLKNPGVSGVRIRPDGKILATAGWDH 273 (323)
T ss_pred ccccchhhccCcceeeeechhhcCCcCCCccccceeeeeccccCcc--cccceEEecCCCccceEEccCCcEEeecccCC
Confidence 3344688899999887654 55677888899999987542211 11222222344588889999999999999999
Q ss_pred cEEEEeCCCccccceeeeccceEEEE--EEeCCCEEEEeeCCCeEEEEec
Q 047325 266 LVNFWEREKQLSHGGVLKGHKLAVLC--LAAAGKLVFSGSADKTICVWRR 313 (368)
Q Consensus 266 ~i~i~d~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~~~~~dg~i~iw~~ 313 (368)
+|++|..++...+ ..+.-|...+.+ |+|+..++++++.|++|.+|++
T Consensus 274 RiRVyswrtl~pL-AVLkyHsagvn~vAfspd~~lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 274 RIRVYSWRTLNPL-AVLKYHSAGVNAVAFSPDCELMAAASKDARISLWKL 322 (323)
T ss_pred cEEEEEeccCCch-hhhhhhhcceeEEEeCCCCchhhhccCCceEEeeec
Confidence 9999999987665 677778887755 5567789999999999999975
No 212
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.72 E-value=1.2e-14 Score=113.22 Aligned_cols=272 Identities=14% Similarity=0.183 Sum_probs=171.7
Q ss_pred cCCcEEEEEec--CCEEEEccCCCcEEEEcCCcc-------eecccCCC------------CCeeEEEEe----CCEEEE
Q 047325 43 EEGHIYSLAAS--KDLLYTGSDSKNIRVWKNLKE-------FCGFKASS------------GLVKAIVIS----GEKIFT 97 (368)
Q Consensus 43 h~~~i~~~~~~--~~~l~s~~~dg~i~iw~~~~~-------~~~~~~~~------------~~v~~~~~~----~~~l~s 97 (368)
..+-|.++.|+ |++||||..+|.|.++.-.+. ...++.|. ..|..+.|. ...++.
T Consensus 24 eadiis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FLl 103 (433)
T KOG1354|consen 24 EADIISAVEFDHYGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFLL 103 (433)
T ss_pred hhcceeeEEeecccceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEEE
Confidence 34568888886 889999999999999964321 12344443 357778886 446777
Q ss_pred EeCCCeEEEEeecCCCccccccC----CccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcCCCCEEEEEe
Q 047325 98 GHQDGKIRVWKISPKNQSVHKRA----GTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCGLLYTAS 173 (368)
Q Consensus 98 ~~~dg~i~vw~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 173 (368)
.+.|.+|++|.+........... ........+......+.........+...-..|+--|+++.++.|+..++++.
T Consensus 104 stNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~Et~lSAD 183 (433)
T KOG1354|consen 104 STNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDKETFLSAD 183 (433)
T ss_pred ecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCccceEeecc
Confidence 78899999999876654331000 00000000000000001111111111112245888899999999999998876
Q ss_pred CCCcEEEEEccCCeE---EEEeecC-----CCceEEEEeCCCC--eEEEEcCCCeEEEEEcCCCCCCcccccc-------
Q 047325 174 WDRTFKVWRISDSKC---LESVSAH-----DDAVNSVVSSSEG--LIFTGSADGTVKVWKREQHGKGTKHSLA------- 236 (368)
Q Consensus 174 ~d~~i~iwd~~~~~~---~~~~~~~-----~~~v~~~~~~~~~--~l~~~~~dg~i~i~d~~~~~~~~~~~~~------- 236 (368)
|=.|.+|+++-... +..++.+ ..-|++..|+|.. .++-.+..|+|++-|+|...........
T Consensus 184 -dLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~hsKlfEepedp 262 (433)
T KOG1354|consen 184 -DLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAHSKLFEEPEDP 262 (433)
T ss_pred -ceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcchhhhhccccCC
Confidence 67899999864322 2233333 3468888999987 7888889999999999954321111111
Q ss_pred ---eeeccccccEEEEEEcCCCCEEEEecCCCcEEEEeCCCccccceeeeccc-----------------eEEEEEEeCC
Q 047325 237 ---QTLLKQECAVTALVVSSSRSIVYCGSSDGLVNFWEREKQLSHGGVLKGHK-----------------LAVLCLAAAG 296 (368)
Q Consensus 237 ---~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~-----------------~~~~~~~~~~ 296 (368)
.-+..--..|..+.|+++|+++++-.. -+|++||+.....+.....-|. ..-.+++-++
T Consensus 263 ~~rsffseiIsSISDvKFs~sGryilsRDy-ltvk~wD~nme~~pv~t~~vh~~lr~kLc~lYEnD~IfdKFec~~sg~~ 341 (433)
T KOG1354|consen 263 SSRSFFSEIISSISDVKFSHSGRYILSRDY-LTVKLWDLNMEAKPVETYPVHEYLRSKLCSLYENDAIFDKFECSWSGND 341 (433)
T ss_pred cchhhHHHHhhhhhceEEccCCcEEEEecc-ceeEEEeccccCCcceEEeehHhHHHHHHHHhhccchhheeEEEEcCCc
Confidence 111122356888999999999998754 6799999965555545554442 1124555567
Q ss_pred CEEEEeeCCCeEEEEecCCC
Q 047325 297 KLVFSGSADKTICVWRRDGA 316 (368)
Q Consensus 297 ~~l~~~~~dg~i~iw~~~~~ 316 (368)
.++++|+..+.+++++...+
T Consensus 342 ~~v~TGsy~n~frvf~~~~g 361 (433)
T KOG1354|consen 342 SYVMTGSYNNVFRVFNLARG 361 (433)
T ss_pred ceEecccccceEEEecCCCC
Confidence 79999999999999986543
No 213
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.71 E-value=9.2e-16 Score=125.97 Aligned_cols=172 Identities=16% Similarity=0.227 Sum_probs=128.0
Q ss_pred CCCCEEEEEeCCCcEEEEEccCCeEEEEee----cCCCceEEEEeCCCC--eEEEEcCCCeEEEEEcCCCCCC-------
Q 047325 164 QDCGLLYTASWDRTFKVWRISDSKCLESVS----AHDDAVNSVVSSSEG--LIFTGSADGTVKVWKREQHGKG------- 230 (368)
Q Consensus 164 ~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~----~~~~~v~~~~~~~~~--~l~~~~~dg~i~i~d~~~~~~~------- 230 (368)
|.+--++.|-.-|.|.+.|....+..+.+. -....++|+.|-|.+ .++++-.+|.+++||.......
T Consensus 183 ~~g~dllIGf~tGqvq~idp~~~~~sklfne~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~~ 262 (636)
T KOG2394|consen 183 PKGLDLLIGFTTGQVQLIDPINFEVSKLFNEERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQA 262 (636)
T ss_pred CCCcceEEeeccCceEEecchhhHHHHhhhhcccccccceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCcccc
Confidence 455567788888999999986633222121 134689999999876 8888888999999986432110
Q ss_pred ---------------cccccceeeccccccEEEEEEcCCCCEEEEecCCCcEEEEeCCCccccceeeecc--ceEEEEEE
Q 047325 231 ---------------TKHSLAQTLLKQECAVTALVVSSSRSIVYCGSSDGLVNFWEREKQLSHGGVLKGH--KLAVLCLA 293 (368)
Q Consensus 231 ---------------~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~--~~~~~~~~ 293 (368)
....++..+.-.++.|..++|+|||++||+.+.||.++|||..+.+... ..+.- ....+|++
T Consensus 263 ~k~~~~f~i~t~ksk~~rNPv~~w~~~~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~eLlg-~mkSYFGGLLCvcWS 341 (636)
T KOG2394|consen 263 LKDGDQFAILTSKSKKTRNPVARWHIGEGSINEFAFSPDGKYLATVSQDGFLRIFDFDTQELLG-VMKSYFGGLLCVCWS 341 (636)
T ss_pred cCCCCeeEEeeeeccccCCccceeEeccccccceeEcCCCceEEEEecCceEEEeeccHHHHHH-HHHhhccceEEEEEc
Confidence 0001222233345689999999999999999999999999999866543 22211 23457888
Q ss_pred eCCCEEEEeeCCCeEEEEecCCCceeeeEeeeccccCeeEEEEec
Q 047325 294 AAGKLVFSGSADKTICVWRRDGAIHTCLSVLTGHTGPVKCLAVEE 338 (368)
Q Consensus 294 ~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~l~~~~ 338 (368)
|||+||++|++|-.|.||.+... +.+..-.+|..+|+.++|.|
T Consensus 342 PDGKyIvtGGEDDLVtVwSf~er--RVVARGqGHkSWVs~VaFDp 384 (636)
T KOG2394|consen 342 PDGKYIVTGGEDDLVTVWSFEER--RVVARGQGHKSWVSVVAFDP 384 (636)
T ss_pred CCccEEEecCCcceEEEEEeccc--eEEEeccccccceeeEeecc
Confidence 99999999999999999988876 78888899999999999995
No 214
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.70 E-value=5.6e-15 Score=122.45 Aligned_cols=272 Identities=17% Similarity=0.164 Sum_probs=185.7
Q ss_pred CcCCcEEEEEecCC---EEEEccCCCcEEEEcCCcceecccCCCC-CeeEE-EEeCC--EEEEEeCCCeEEEEeecCCCc
Q 047325 42 REEGHIYSLAASKD---LLYTGSDSKNIRVWKNLKEFCGFKASSG-LVKAI-VISGE--KIFTGHQDGKIRVWKISPKNQ 114 (368)
Q Consensus 42 ~h~~~i~~~~~~~~---~l~s~~~dg~i~iw~~~~~~~~~~~~~~-~v~~~-~~~~~--~l~s~~~dg~i~vw~~~~~~~ 114 (368)
.|...-+.+..+++ .+|||-.--.|++||+.+.-..|..|.. .+..+ -.+.+ .++.-..|.+|.+-..-..-.
T Consensus 49 e~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLSLKFERhlDae~V~feiLsDD~SK~v~L~~DR~IefHak~G~hy 128 (703)
T KOG2321|consen 49 EMPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANLSLKFERHLDAEVVDFEILSDDYSKSVFLQNDRTIEFHAKYGRHY 128 (703)
T ss_pred CCccccceeEecCCCcEEEEecccCCceEEEEcccceeeeeecccccceeEEEeccchhhheEeecCceeeehhhcCeee
Confidence 56677777777655 7889999999999999887776766533 23333 23332 344445566665543221110
Q ss_pred cccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcCCCCEEEEEeCCCcEEEEEccCCeEEEEeec
Q 047325 115 SVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCGLLYTASWDRTFKVWRISDSKCLESVSA 194 (368)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~ 194 (368)
.. + -...-.+++++.-.--|+.++....|+-++++.|+.+..+..
T Consensus 129 ~~--R---------------------------------IP~~GRDm~y~~~scDly~~gsg~evYRlNLEqGrfL~P~~~ 173 (703)
T KOG2321|consen 129 RT--R---------------------------------IPKFGRDMKYHKPSCDLYLVGSGSEVYRLNLEQGRFLNPFET 173 (703)
T ss_pred ee--e---------------------------------cCcCCccccccCCCccEEEeecCcceEEEEcccccccccccc
Confidence 00 0 122234566654333345555557899999999999999988
Q ss_pred CCCceEEEEeCCCC-eEEEEcCCCeEEEEEcCCCCCCcccccceeeccccc-----cEEEEEEcCCCCEEEEecCCCcEE
Q 047325 195 HDDAVNSVVSSSEG-LIFTGSADGTVKVWKREQHGKGTKHSLAQTLLKQEC-----AVTALVVSSSRSIVYCGSSDGLVN 268 (368)
Q Consensus 195 ~~~~v~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~-----~i~~~~~~~~~~~l~~~~~dg~i~ 268 (368)
..+.++++..++.. +|++|+.+|.|..||.+................+.+ .|+++.|+.+|-.+++|+.+|.+.
T Consensus 174 ~~~~lN~v~in~~hgLla~Gt~~g~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~ 253 (703)
T KOG2321|consen 174 DSGELNVVSINEEHGLLACGTEDGVVEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVL 253 (703)
T ss_pred ccccceeeeecCccceEEecccCceEEEecchhhhhheeeecccccCCCccccccCcceEEEecCCceeEEeeccCCcEE
Confidence 88999999999877 899999999999999997654332222333333333 499999999999999999999999
Q ss_pred EEeCCCccccceeeeccceEEEEEEeC----CCEEEEeeCCCeEEEEecCCCceeeeEeeeccccCeeEEEEecCCeeee
Q 047325 269 FWEREKQLSHGGVLKGHKLAVLCLAAA----GKLVFSGSADKTICVWRRDGAIHTCLSVLTGHTGPVKCLAVEEDRDSSS 344 (368)
Q Consensus 269 i~d~~~~~~~~~~~~~~~~~~~~~~~~----~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~ 344 (368)
|||++....+...-.+...++..+.+. +..+++. ....++|||-.++ +....+. ....++.+++-|++-++.
T Consensus 254 iyDLRa~~pl~~kdh~~e~pi~~l~~~~~~~q~~v~S~-Dk~~~kiWd~~~G--k~~asiE-pt~~lND~C~~p~sGm~f 329 (703)
T KOG2321|consen 254 IYDLRASKPLLVKDHGYELPIKKLDWQDTDQQNKVVSM-DKRILKIWDECTG--KPMASIE-PTSDLNDFCFVPGSGMFF 329 (703)
T ss_pred EEEcccCCceeecccCCccceeeecccccCCCceEEec-chHHhhhcccccC--Cceeecc-ccCCcCceeeecCCceEE
Confidence 999998877755555556677777762 3455543 4567999987666 5555554 344599999999998766
Q ss_pred cCCcceEE
Q 047325 345 STSSCAQR 352 (368)
Q Consensus 345 ~~~~~~~~ 352 (368)
++..+..+
T Consensus 330 ~Ane~~~m 337 (703)
T KOG2321|consen 330 TANESSKM 337 (703)
T ss_pred EecCCCcc
Confidence 66555444
No 215
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.70 E-value=3.4e-15 Score=122.73 Aligned_cols=169 Identities=17% Similarity=0.220 Sum_probs=122.1
Q ss_pred CCEEEEEeCCCeEEEEeecCCCccccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcCC-CCEEE
Q 047325 92 GEKIFTGHQDGKIRVWKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQD-CGLLY 170 (368)
Q Consensus 92 ~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~ 170 (368)
+--|+.|-.-|.+.+.|....+......... .-....|+|+.|-|. ...++
T Consensus 185 g~dllIGf~tGqvq~idp~~~~~sklfne~r----------------------------~i~ktsvT~ikWvpg~~~~Fl 236 (636)
T KOG2394|consen 185 GLDLLIGFTTGQVQLIDPINFEVSKLFNEER----------------------------LINKSSVTCIKWVPGSDSLFL 236 (636)
T ss_pred CcceEEeeccCceEEecchhhHHHHhhhhcc----------------------------cccccceEEEEEEeCCCceEE
Confidence 4568888888999988876522111111000 004478999999984 45777
Q ss_pred EEeCCCcEEEEEccCC----------------------------eEEEEeecCCCceEEEEeCCCC-eEEEEcCCCeEEE
Q 047325 171 TASWDRTFKVWRISDS----------------------------KCLESVSAHDDAVNSVVSSSEG-LIFTGSADGTVKV 221 (368)
Q Consensus 171 ~~~~d~~i~iwd~~~~----------------------------~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~dg~i~i 221 (368)
++-.+|.+.+||..-. .++..+.--.+.|..++|+||| +|++.+.||.++|
T Consensus 237 ~a~~sGnlyly~~~~~~~~t~p~~~~~k~~~~f~i~t~ksk~~rNPv~~w~~~~g~in~f~FS~DG~~LA~VSqDGfLRv 316 (636)
T KOG2394|consen 237 VAHASGNLYLYDKEIVCGATAPSYQALKDGDQFAILTSKSKKTRNPVARWHIGEGSINEFAFSPDGKYLATVSQDGFLRI 316 (636)
T ss_pred EEEecCceEEeeccccccCCCCcccccCCCCeeEEeeeeccccCCccceeEeccccccceeEcCCCceEEEEecCceEEE
Confidence 7788999999976321 0111222234578889999999 9999999999999
Q ss_pred EEcCCCCCCcccccceeeccccccEEEEEEcCCCCEEEEecCCCcEEEEeCCCccccceeeeccceEEEEEEeC
Q 047325 222 WKREQHGKGTKHSLAQTLLKQECAVTALVVSSSRSIVYCGSSDGLVNFWEREKQLSHGGVLKGHKLAVLCLAAA 295 (368)
Q Consensus 222 ~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~ 295 (368)
||.... .+.-.....-+...|++|+|||++|++|++|.-|.||.+...+.. ..-.+|...|..+.+|
T Consensus 317 F~fdt~------eLlg~mkSYFGGLLCvcWSPDGKyIvtGGEDDLVtVwSf~erRVV-ARGqGHkSWVs~VaFD 383 (636)
T KOG2394|consen 317 FDFDTQ------ELLGVMKSYFGGLLCVCWSPDGKYIVTGGEDDLVTVWSFEERRVV-ARGQGHKSWVSVVAFD 383 (636)
T ss_pred eeccHH------HHHHHHHhhccceEEEEEcCCccEEEecCCcceEEEEEeccceEE-EeccccccceeeEeec
Confidence 999754 233344455678999999999999999999999999999876554 6677888888666555
No 216
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.70 E-value=1.6e-15 Score=131.33 Aligned_cols=189 Identities=13% Similarity=0.092 Sum_probs=124.4
Q ss_pred cCCCEeEEEEcCCCCEEEEEeCC---CcEEEEEccCCeE--EEEeecCCCceEEEEeCCCC-eEEEE-cCCCeEEEE--E
Q 047325 153 HSDAVSCMSLDQDCGLLYTASWD---RTFKVWRISDSKC--LESVSAHDDAVNSVVSSSEG-LIFTG-SADGTVKVW--K 223 (368)
Q Consensus 153 ~~~~v~~~~~~~~~~~l~~~~~d---~~i~iwd~~~~~~--~~~~~~~~~~v~~~~~~~~~-~l~~~-~~dg~i~i~--d 223 (368)
+...+....|+||++.|+.++.+ ..|.+||+.+++. +..+.+ ....++|+|+| .|+.+ ..+|.+.+| |
T Consensus 202 ~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~g---~~~~~~wSPDG~~La~~~~~~g~~~Iy~~d 278 (429)
T PRK01742 202 SSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVASFRG---HNGAPAFSPDGSRLAFASSKDGVLNIYVMG 278 (429)
T ss_pred CCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEecCCC---ccCceeECCCCCEEEEEEecCCcEEEEEEE
Confidence 67789999999999999887654 3699999988754 333333 34468999999 66655 467876666 5
Q ss_pred cCCCCCCcccccceeeccccccEEEEEEcCCCCEEEEec-CCCcEEEEeCCCccccceeeeccceEEEEEEeCCCEEEEe
Q 047325 224 REQHGKGTKHSLAQTLLKQECAVTALVVSSSRSIVYCGS-SDGLVNFWEREKQLSHGGVLKGHKLAVLCLAAAGKLVFSG 302 (368)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 302 (368)
+... ....+..+...+....|+||++.|+..+ .+|...+|++.......... .+......++||+++|+..
T Consensus 279 ~~~~-------~~~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~~l-~~~~~~~~~SpDG~~ia~~ 350 (429)
T PRK01742 279 ANGG-------TPSQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGASLV-GGRGYSAQISADGKTLVMI 350 (429)
T ss_pred CCCC-------CeEeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCeEEe-cCCCCCccCCCCCCEEEEE
Confidence 4332 1233445566678899999999776554 57888888765322111222 2222335688999999888
Q ss_pred eCCCeEEEEecCCCceeeeEeeeccccCeeEEEEecCCeeeecCC--cceEEEEEee
Q 047325 303 SADKTICVWRRDGAIHTCLSVLTGHTGPVKCLAVEEDRDSSSSTS--SCAQRWIVYS 357 (368)
Q Consensus 303 ~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~--~~~~~w~l~s 357 (368)
+.++ +.+||+.++....+. ..+ ...++.|+|+|+++++++ +...+|.+.+
T Consensus 351 ~~~~-i~~~Dl~~g~~~~lt--~~~--~~~~~~~sPdG~~i~~~s~~g~~~~l~~~~ 402 (429)
T PRK01742 351 NGDN-VVKQDLTSGSTEVLS--STF--LDESPSISPNGIMIIYSSTQGLGKVLQLVS 402 (429)
T ss_pred cCCC-EEEEECCCCCeEEec--CCC--CCCCceECCCCCEEEEEEcCCCceEEEEEE
Confidence 7765 556888776433221 122 235678999999887654 4456666553
No 217
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.69 E-value=7.5e-16 Score=125.00 Aligned_cols=248 Identities=15% Similarity=0.202 Sum_probs=174.8
Q ss_pred cccCCCCCeeEEEEe--CCEEEEEeCCCeEEEEeecCCCccccccCCccccceeeeeccCCCCceeEecccceeeeeecC
Q 047325 77 GFKASSGLVKAIVIS--GEKIFTGHQDGKIRVWKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHS 154 (368)
Q Consensus 77 ~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (368)
.+..|.+.|..+.|+ |..|++|+.|..|.+||.........+..+ |.
T Consensus 137 kL~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SG-------------------------------H~ 185 (559)
T KOG1334|consen 137 KLNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLSFESG-------------------------------HC 185 (559)
T ss_pred cccCCCCccceeeecccCceeeccCccceEEeehhhccCcccccccc-------------------------------cc
Confidence 467899999999999 999999999999999999988876665544 88
Q ss_pred CCEeEEEEcC--CCCEEEEEeCCCcEEEEEccC-CeE--EEEeecCCCceEEEEeCCCC--eEEEEcCCCeEEEEEcCCC
Q 047325 155 DAVSCMSLDQ--DCGLLYTASWDRTFKVWRISD-SKC--LESVSAHDDAVNSVVSSSEG--LIFTGSADGTVKVWKREQH 227 (368)
Q Consensus 155 ~~v~~~~~~~--~~~~l~~~~~d~~i~iwd~~~-~~~--~~~~~~~~~~v~~~~~~~~~--~l~~~~~dg~i~i~d~~~~ 227 (368)
..|....|-| +...+++++.||.+++=.+.. +.+ ...+..|.++|.-++.-|+. .|.+++.|+.+.-+|++..
T Consensus 186 ~NvfQaKFiP~s~d~ti~~~s~dgqvr~s~i~~t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~ 265 (559)
T KOG1334|consen 186 NNVFQAKFIPFSGDRTIVTSSRDGQVRVSEILETGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQD 265 (559)
T ss_pred cchhhhhccCCCCCcCceeccccCceeeeeeccccceecceecccccCccceeeecCCCCCcccccccccceeeeeeccC
Confidence 8888888888 456899999999999877643 322 34566799999999999988 8999999999999999976
Q ss_pred CCCcccccceeeccccccEEEEEEcCCC-CEEEEecCCCcEEEEeCCCcccc------cee-----eeccceEEEEEEe-
Q 047325 228 GKGTKHSLAQTLLKQECAVTALVVSSSR-SIVYCGSSDGLVNFWEREKQLSH------GGV-----LKGHKLAVLCLAA- 294 (368)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~------~~~-----~~~~~~~~~~~~~- 294 (368)
.......+...-....-....++..|.. +.+++|+.|..+++||.+.-... ... .......|+++.+
T Consensus 266 ~pa~~~~cr~~~~~~~v~L~~Ia~~P~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ys 345 (559)
T KOG1334|consen 266 VPAEKFVCREADEKERVGLYTIAVDPRNTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYS 345 (559)
T ss_pred CccceeeeeccCCccceeeeeEecCCCCccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEec
Confidence 5422222111111112357888888844 58999999999999998742211 111 1122344555554
Q ss_pred -CCCEEEEeeCCCeEEEEecCCCce----------eeeEe-eecccc--CeeEEEE-ecCCeeeecCCcceEEEEEeeCC
Q 047325 295 -AGKLVFSGSADKTICVWRRDGAIH----------TCLSV-LTGHTG--PVKCLAV-EEDRDSSSSTSSCAQRWIVYSGS 359 (368)
Q Consensus 295 -~~~~l~~~~~dg~i~iw~~~~~~~----------~~~~~-~~~h~~--~v~~l~~-~~~~~~~~~~~~~~~~w~l~sg~ 359 (368)
++.-|.++-.|-.|+++.-..+.+ ..+.. +++|.+ .|..+-| -|... ++++||
T Consensus 346 h~~sElLaSYnDe~IYLF~~~~~~G~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsE------------yVvSGS 413 (559)
T KOG1334|consen 346 HDGSELLASYNDEDIYLFNKSMGDGSEPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSE------------YVVSGS 413 (559)
T ss_pred CCccceeeeecccceEEeccccccCCCCCCCcchhhccchhhcccccccccceeeeccCccc------------eEEecC
Confidence 555555566677899996433322 22333 788875 4777765 46777 455666
Q ss_pred cccccccC
Q 047325 360 LDKSDDDV 367 (368)
Q Consensus 360 ~D~~v~i~ 367 (368)
+-|.|.||
T Consensus 414 DCGhIFiW 421 (559)
T KOG1334|consen 414 DCGHIFIW 421 (559)
T ss_pred ccceEEEE
Confidence 66666655
No 218
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.69 E-value=1.1e-16 Score=128.94 Aligned_cols=226 Identities=14% Similarity=0.197 Sum_probs=178.8
Q ss_pred eeEEEEe--CCEEEEEeCCCeEEEEeecCCCccccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEE
Q 047325 85 VKAIVIS--GEKIFTGHQDGKIRVWKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSL 162 (368)
Q Consensus 85 v~~~~~~--~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 162 (368)
-..+.+. |..|+.|+.-|.|..+|..+......+. -...|.++.|
T Consensus 132 PY~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~Ei~---------------------------------v~Etv~Dv~~ 178 (545)
T KOG1272|consen 132 PYHLDYTRNGRHLLLGGRKGHLAAFDWVTKKLHFEIN---------------------------------VMETVRDVTF 178 (545)
T ss_pred CeeeeecCCccEEEecCCccceeeeecccceeeeeee---------------------------------hhhhhhhhhh
Confidence 3455665 8899999999999999999887544333 3467888999
Q ss_pred cCCCCEEEEEeCCCcEEEEEccCCeEEEEeecCCCceEEEEeCCCC-eEEEEcCCCeEEEEEcCCCCCCcccccceeecc
Q 047325 163 DQDCGLLYTASWDRTFKVWRISDSKCLESVSAHDDAVNSVVSSSEG-LIFTGSADGTVKVWKREQHGKGTKHSLAQTLLK 241 (368)
Q Consensus 163 ~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~ 241 (368)
..+.+++|++- ...+.+||- .|..++.++.| ..|..+.|.|.. +|++++..|.++.-|+..++ .+..+..
T Consensus 179 LHneq~~AVAQ-K~y~yvYD~-~GtElHClk~~-~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~Gk------lVa~~~t 249 (545)
T KOG1272|consen 179 LHNEQFFAVAQ-KKYVYVYDN-NGTELHCLKRH-IRVARLEFLPYHFLLVAASEAGFLKYQDVSTGK------LVASIRT 249 (545)
T ss_pred hcchHHHHhhh-hceEEEecC-CCcEEeehhhc-CchhhhcccchhheeeecccCCceEEEeechhh------hhHHHHc
Confidence 88888887775 578999994 67778888765 568899999999 88899999999999998873 4666666
Q ss_pred ccccEEEEEEcCCCCEEEEecCCCcEEEEeCCCccccceeeeccceEEEEEE--eCCCEEEEeeCCCeEEEEecCCCcee
Q 047325 242 QECAVTALVVSSSRSIVYCGSSDGLVNFWEREKQLSHGGVLKGHKLAVLCLA--AAGKLVFSGSADKTICVWRRDGAIHT 319 (368)
Q Consensus 242 ~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~~~~~dg~i~iw~~~~~~~~ 319 (368)
..+.+..++-+|-...+-+|...|+|.+|.....+.+ ..+..|.++|.+++ ++|+|++|.+.|..++|||++.. .
T Consensus 250 ~~G~~~vm~qNP~NaVih~GhsnGtVSlWSP~skePL-vKiLcH~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~--~ 326 (545)
T KOG1272|consen 250 GAGRTDVMKQNPYNAVIHLGHSNGTVSLWSPNSKEPL-VKILCHRGPVSSIAVDRGGRYMATTGLDRKVKIWDLRNF--Y 326 (545)
T ss_pred cCCccchhhcCCccceEEEcCCCceEEecCCCCcchH-HHHHhcCCCcceEEECCCCcEEeecccccceeEeeeccc--c
Confidence 7788888999998889999999999999998876666 44556888885554 57999999999999999999876 3
Q ss_pred eeEeeeccccCeeEEEEecCCeeeecCCcceEEEEEe
Q 047325 320 CLSVLTGHTGPVKCLAVEEDRDSSSSTSSCAQRWIVY 356 (368)
Q Consensus 320 ~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~w~l~ 356 (368)
.+.++.. .-+...+++|..|...++-...+.+|.=+
T Consensus 327 ql~t~~t-p~~a~~ls~SqkglLA~~~G~~v~iw~d~ 362 (545)
T KOG1272|consen 327 QLHTYRT-PHPASNLSLSQKGLLALSYGDHVQIWKDA 362 (545)
T ss_pred ccceeec-CCCccccccccccceeeecCCeeeeehhh
Confidence 3444433 45678899999888666666667777533
No 219
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.68 E-value=2.9e-14 Score=123.15 Aligned_cols=230 Identities=13% Similarity=0.033 Sum_probs=149.0
Q ss_pred cEEEEcCCcc-eecccCCCCCeeEEEEe--CCEEEEEe---CCCeEEEEeecCCCccccccCCccccceeeeeccCCCCc
Q 047325 65 NIRVWKNLKE-FCGFKASSGLVKAIVIS--GEKIFTGH---QDGKIRVWKISPKNQSVHKRAGTLPTLKDIFKSSIKPSN 138 (368)
Q Consensus 65 ~i~iw~~~~~-~~~~~~~~~~v~~~~~~--~~~l~s~~---~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (368)
.|.+||.... ...+..+...+.+..|+ |+.|+..+ .+..|.+|++.+++......
T Consensus 180 ~l~~~d~dg~~~~~lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~l~~------------------- 240 (429)
T PRK03629 180 ELRVSDYDGYNQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVAS------------------- 240 (429)
T ss_pred eEEEEcCCCCCCEEeecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEEccC-------------------
Confidence 6888887643 34455566788889998 77777654 24578899987765322111
Q ss_pred eeEecccceeeeeecCCCEeEEEEcCCCCEEEEE-eCCC--cEEEEEccCCeEEEEeecCCCceEEEEeCCCC-eEEEEc
Q 047325 139 YIEVRRHRTALWIRHSDAVSCMSLDQDCGLLYTA-SWDR--TFKVWRISDSKCLESVSAHDDAVNSVVSSSEG-LIFTGS 214 (368)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~d~--~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~ 214 (368)
....+....|+|||+.|+.. +.+| .|.+||+.+++.... ..+...+....|+|+| .|+..+
T Consensus 241 --------------~~~~~~~~~~SPDG~~La~~~~~~g~~~I~~~d~~tg~~~~l-t~~~~~~~~~~wSPDG~~I~f~s 305 (429)
T PRK03629 241 --------------FPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIRQV-TDGRSNNTEPTWFPDSQNLAYTS 305 (429)
T ss_pred --------------CCCCcCCeEECCCCCEEEEEEcCCCCcEEEEEECCCCCEEEc-cCCCCCcCceEECCCCCEEEEEe
Confidence 22234467999999988765 4444 588999988776543 3344567788999999 565554
Q ss_pred C-CCeEEEE--EcCCCCCCcccccceeeccccccEEEEEEcCCCCEEEEecCC---CcEEEEeCCCccccceeeeccceE
Q 047325 215 A-DGTVKVW--KREQHGKGTKHSLAQTLLKQECAVTALVVSSSRSIVYCGSSD---GLVNFWEREKQLSHGGVLKGHKLA 288 (368)
Q Consensus 215 ~-dg~i~i~--d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d---g~i~i~d~~~~~~~~~~~~~~~~~ 288 (368)
. ++...+| |+..+. ...+...........|+|+|++|+..+.+ ..|.+||+.++... .........
T Consensus 306 ~~~g~~~Iy~~d~~~g~-------~~~lt~~~~~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~~-~Lt~~~~~~ 377 (429)
T PRK03629 306 DQAGRPQVYKVNINGGA-------PQRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQ-VLTDTFLDE 377 (429)
T ss_pred CCCCCceEEEEECCCCC-------eEEeecCCCCccCEEECCCCCEEEEEEccCCCceEEEEECCCCCeE-EeCCCCCCC
Confidence 4 4444555 554331 12222233345678899999998876543 35888998866432 111222223
Q ss_pred EEEEEeCCCEEEEeeCCCe---EEEEecCCCceeeeEeeeccccCeeEEEEecC
Q 047325 289 VLCLAAAGKLVFSGSADKT---ICVWRRDGAIHTCLSVLTGHTGPVKCLAVEED 339 (368)
Q Consensus 289 ~~~~~~~~~~l~~~~~dg~---i~iw~~~~~~~~~~~~~~~h~~~v~~l~~~~~ 339 (368)
...++|||+.|+.++.++. +.+++++.. ....+.+|.+.+...+|+|-
T Consensus 378 ~p~~SpDG~~i~~~s~~~~~~~l~~~~~~G~---~~~~l~~~~~~~~~p~Wsp~ 428 (429)
T PRK03629 378 TPSIAPNGTMVIYSSSQGMGSVLNLVSTDGR---FKARLPATDGQVKFPAWSPY 428 (429)
T ss_pred CceECCCCCEEEEEEcCCCceEEEEEECCCC---CeEECccCCCCcCCcccCCC
Confidence 4678899999999888765 666666543 34556678888999999873
No 220
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.68 E-value=1.2e-14 Score=128.51 Aligned_cols=193 Identities=20% Similarity=0.218 Sum_probs=152.8
Q ss_pred CCEeEEEEcCCCCEEEEEeCCCcEEEEEccCCeEEEEeecCCCce----EEEEeCCCC-eEEEEcCCCeEEEEEcCCCCC
Q 047325 155 DAVSCMSLDQDCGLLYTASWDRTFKVWRISDSKCLESVSAHDDAV----NSVVSSSEG-LIFTGSADGTVKVWKREQHGK 229 (368)
Q Consensus 155 ~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v----~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~ 229 (368)
+.|....+....+.++.++.++.+.+||...+.....+...+... .-+-.+++. ++++|+.-+.|.+|+....+
T Consensus 88 ~wi~g~~l~~e~k~i~l~~~~ns~~i~d~~~~~~~~~i~~~er~~l~~~~~~g~s~~~~~i~~gsv~~~iivW~~~~dn- 166 (967)
T KOG0974|consen 88 DWIFGAKLFEENKKIALVTSRNSLLIRDSKNSSVLSKIQSDERCTLYSSLIIGDSAEELYIASGSVFGEIIVWKPHEDN- 166 (967)
T ss_pred ccccccchhhhcceEEEEEcCceEEEEecccCceehhcCCCceEEEEeEEEEeccCcEEEEEeccccccEEEEeccccC-
Confidence 344445555567788888889999999998887777665433221 112334555 89999999999999998332
Q ss_pred CcccccceeeccccccEEEEEEcCCCCEEEEecCCCcEEEEeCCCccccceeeeccceEEEEEEeCCCEEEEeeCCCeEE
Q 047325 230 GTKHSLAQTLLKQECAVTALVVSSSRSIVYCGSSDGLVNFWEREKQLSHGGVLKGHKLAVLCLAAAGKLVFSGSADKTIC 309 (368)
Q Consensus 230 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~ 309 (368)
....+.+|++.|.++.++.+|.++++.++|..+++|++++.+.......+|+..+.........+++++.|.+.+
T Consensus 167 -----~p~~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~~~~fgHsaRvw~~~~~~n~i~t~gedctcr 241 (967)
T KOG0974|consen 167 -----KPIRLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLGCTGFGHSARVWACCFLPNRIITVGEDCTCR 241 (967)
T ss_pred -----CcceecccCCceEEEEEccCCcEEEEEecCcceeeeecccccccCcccccccceeEEEEeccceeEEeccceEEE
Confidence 222678999999999999999999999999999999999988887778899999966666555999999999999
Q ss_pred EEecCCCceeeeEeeecccc-CeeEEEEecCCeeeecCCcceEEEEEeeCCcccccccCC
Q 047325 310 VWRRDGAIHTCLSVLTGHTG-PVKCLAVEEDRDSSSSTSSCAQRWIVYSGSLDKSDDDVH 368 (368)
Q Consensus 310 iw~~~~~~~~~~~~~~~h~~-~v~~l~~~~~~~~~~~~~~~~~~w~l~sg~~D~~v~i~h 368 (368)
+|+.+.. .+..+.+|.. .|..++..++.. ..+|++.|+.+|+|+
T Consensus 242 vW~~~~~---~l~~y~~h~g~~iw~~~~~~~~~------------~~vT~g~Ds~lk~~~ 286 (967)
T KOG0974|consen 242 VWGVNGT---QLEVYDEHSGKGIWKIAVPIGVI------------IKVTGGNDSTLKLWD 286 (967)
T ss_pred EEecccc---eehhhhhhhhcceeEEEEcCCce------------EEEeeccCcchhhhh
Confidence 9976654 3447777765 599999988877 788999999999986
No 221
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.68 E-value=7.5e-14 Score=107.65 Aligned_cols=167 Identities=17% Similarity=0.314 Sum_probs=117.2
Q ss_pred CcEEEEEccCCeEEEEeecCCCceEEEEeCCCCeEEEEcCCCeEEEEEcCCCCCCcccccceee--ccccccEEEEEEcC
Q 047325 176 RTFKVWRISDSKCLESVSAHDDAVNSVVSSSEGLIFTGSADGTVKVWKREQHGKGTKHSLAQTL--LKQECAVTALVVSS 253 (368)
Q Consensus 176 ~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~--~~~~~~i~~~~~~~ 253 (368)
+.+.|||=...+++.++. ...+|.++.+.++..+++ ..+.|++|.....-+ ....+ ........+++-..
T Consensus 75 NkviIWDD~k~~~i~el~-f~~~I~~V~l~r~riVvv--l~~~I~VytF~~n~k-----~l~~~et~~NPkGlC~~~~~~ 146 (346)
T KOG2111|consen 75 NKVIIWDDLKERCIIELS-FNSEIKAVKLRRDRIVVV--LENKIYVYTFPDNPK-----LLHVIETRSNPKGLCSLCPTS 146 (346)
T ss_pred ceEEEEecccCcEEEEEE-eccceeeEEEcCCeEEEE--ecCeEEEEEcCCChh-----heeeeecccCCCceEeecCCC
Confidence 479999977778888876 568899999988853332 367899999874311 22222 22233344444443
Q ss_pred CCCEEEE-ecCCCcEEEEeCCCccc-cceeeeccceEEEEEEe--CCCEEEEeeCCCe-EEEEecCCCceeeeEeeecc-
Q 047325 254 SRSIVYC-GSSDGLVNFWEREKQLS-HGGVLKGHKLAVLCLAA--AGKLVFSGSADKT-ICVWRRDGAIHTCLSVLTGH- 327 (368)
Q Consensus 254 ~~~~l~~-~~~dg~i~i~d~~~~~~-~~~~~~~~~~~~~~~~~--~~~~l~~~~~dg~-i~iw~~~~~~~~~~~~~~~h- 327 (368)
+..+||. |-.-|.|.|-|+...+. .......|...+.|++- +|.++|++|..|+ |||||..++ ..+++++.-
T Consensus 147 ~k~~LafPg~k~GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g--~~l~E~RRG~ 224 (346)
T KOG2111|consen 147 NKSLLAFPGFKTGQVQIVDLASTKPNAPSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDG--TLLQELRRGV 224 (346)
T ss_pred CceEEEcCCCccceEEEEEhhhcCcCCceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCC--cEeeeeecCC
Confidence 4445554 55679999999986554 34678899998877765 7999999999998 899988776 667776543
Q ss_pred -ccCeeEEEEecCCeeeecCCcceEE
Q 047325 328 -TGPVKCLAVEEDRDSSSSTSSCAQR 352 (368)
Q Consensus 328 -~~~v~~l~~~~~~~~~~~~~~~~~~ 352 (368)
...|.+|+|||+..++|.++..+.+
T Consensus 225 d~A~iy~iaFSp~~s~LavsSdKgTl 250 (346)
T KOG2111|consen 225 DRADIYCIAFSPNSSWLAVSSDKGTL 250 (346)
T ss_pred chheEEEEEeCCCccEEEEEcCCCeE
Confidence 3469999999999966555544333
No 222
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=99.66 E-value=1.9e-14 Score=112.01 Aligned_cols=249 Identities=17% Similarity=0.280 Sum_probs=178.9
Q ss_pred CCCceeeeccCcCCcEEEEEec--CCEEEEccCCCcEEEEcCCcce----ecccCCCCCeeEEEEe--CCEEEEEeCCCe
Q 047325 32 PQNGLIGSLVREEGHIYSLAAS--KDLLYTGSDSKNIRVWKNLKEF----CGFKASSGLVKAIVIS--GEKIFTGHQDGK 103 (368)
Q Consensus 32 ~~~~~~~~~~~h~~~i~~~~~~--~~~l~s~~~dg~i~iw~~~~~~----~~~~~~~~~v~~~~~~--~~~l~s~~~dg~ 103 (368)
....++..++||.+.|++...- .+-+++.+.|.++|||--.... .....-..+++++.+. ...|+.|-..|+
T Consensus 12 ~kp~ll~~~eG~~d~vn~~~l~~~e~gv~~~s~drtvrv~lkrds~q~wpsI~~~mP~~~~~~~y~~e~~~L~vg~~ngt 91 (404)
T KOG1409|consen 12 KKPELLSKIEGSQDDVNAAILIPKEEGVISVSEDRTVRVWLKRDSGQYWPSIYHYMPSPCSAMEYVSESRRLYVGQDNGT 91 (404)
T ss_pred cchhhhhhhcCchhhhhhheeccCCCCeEEccccceeeeEEeccccccCchhhhhCCCCceEeeeeccceEEEEEEecce
Confidence 3445667789999999877654 4489999999999999543221 1233456778888887 567888999999
Q ss_pred EEEEeecCCCccccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcCCCCEEEEEeCCCcEEEEEc
Q 047325 104 IRVWKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCGLLYTASWDRTFKVWRI 183 (368)
Q Consensus 104 i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~ 183 (368)
+.-+.+...-... ...+.+..|...|..+.|+.....+++.+.|..+.---.
T Consensus 92 vtefs~sedfnkm----------------------------~~~r~~~~h~~~v~~~if~~~~e~V~s~~~dk~~~~hc~ 143 (404)
T KOG1409|consen 92 VTEFALSEDFNKM----------------------------TFLKDYLAHQARVSAIVFSLTHEWVLSTGKDKQFAWHCT 143 (404)
T ss_pred EEEEEhhhhhhhc----------------------------chhhhhhhhhcceeeEEecCCceeEEEeccccceEEEee
Confidence 9888765432111 112233449999999999998889999999887665555
Q ss_pred cCCeEEEEeecCCCceEEEEeCCCCeEEEEcCCCeEEEEEcCCCCCCcccccceeeccccccEEEEEEcCCCCEEEEecC
Q 047325 184 SDSKCLESVSAHDDAVNSVVSSSEGLIFTGSADGTVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSSSRSIVYCGSS 263 (368)
Q Consensus 184 ~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~ 263 (368)
+.+..+..+.-. ....++.+.-. +.+.|...|.|.+-.+..... .+...+.+|.+.+.+++|.|....|++|..
T Consensus 144 e~~~~lg~Y~~~-~~~t~~~~d~~-~~fvGd~~gqvt~lr~~~~~~----~~i~~~~~h~~~~~~l~Wd~~~~~LfSg~~ 217 (404)
T KOG1409|consen 144 ESGNRLGGYNFE-TPASALQFDAL-YAFVGDHSGQITMLKLEQNGC----QLITTFNGHTGEVTCLKWDPGQRLLFSGAS 217 (404)
T ss_pred ccCCcccceEee-ccCCCCceeeE-EEEecccccceEEEEEeecCC----ceEEEEcCcccceEEEEEcCCCcEEEeccc
Confidence 555544332210 01111111111 566677778777777654332 467788999999999999999999999999
Q ss_pred CCcEEEEeCCCccccceeeeccceEEEEEEe--CCCEEEEeeCCCeEEEEecC
Q 047325 264 DGLVNFWEREKQLSHGGVLKGHKLAVLCLAA--AGKLVFSGSADKTICVWRRD 314 (368)
Q Consensus 264 dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~~~~~dg~i~iw~~~ 314 (368)
|..+.+||+...........+|...+..++. --+.+.+++.||.|.+|+++
T Consensus 218 d~~vi~wdigg~~g~~~el~gh~~kV~~l~~~~~t~~l~S~~edg~i~~w~mn 270 (404)
T KOG1409|consen 218 DHSVIMWDIGGRKGTAYELQGHNDKVQALSYAQHTRQLISCGEDGGIVVWNMN 270 (404)
T ss_pred cCceEEEeccCCcceeeeeccchhhhhhhhhhhhheeeeeccCCCeEEEEecc
Confidence 9999999998777776788888888866554 56789999999999999965
No 223
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.65 E-value=6.7e-13 Score=102.49 Aligned_cols=228 Identities=11% Similarity=0.227 Sum_probs=151.3
Q ss_pred EEEEEecCC--EEEEccCCCcEEEEcCCc--ceecccCCC--CCeeEEEEeCCEEEE-EeCC------CeEEEEeecCCC
Q 047325 47 IYSLAASKD--LLYTGSDSKNIRVWKNLK--EFCGFKASS--GLVKAIVISGEKIFT-GHQD------GKIRVWKISPKN 113 (368)
Q Consensus 47 i~~~~~~~~--~l~s~~~dg~i~iw~~~~--~~~~~~~~~--~~v~~~~~~~~~l~s-~~~d------g~i~vw~~~~~~ 113 (368)
..+++|+.+ -+++|.++| .|||+... +....+.+. -.+..+-|..++|+- |+.+ ..+.|||=....
T Consensus 8 ~lsvs~NQD~ScFava~~~G-friyn~~P~ke~~~r~~~~~G~~~veMLfR~N~laLVGGg~~pky~pNkviIWDD~k~~ 86 (346)
T KOG2111|consen 8 TLSVSFNQDHSCFAVATDTG-FRIYNCDPFKESASRQFIDGGFKIVEMLFRSNYLALVGGGSRPKYPPNKVIIWDDLKER 86 (346)
T ss_pred eeEEEEccCCceEEEEecCc-eEEEecCchhhhhhhccccCchhhhhHhhhhceEEEecCCCCCCCCCceEEEEecccCc
Confidence 445888766 677777766 78998653 211111122 233344444565554 4333 368999933222
Q ss_pred ccccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcCCCCEEEEEeCCCcEEEEEcc-CCeEEEEe
Q 047325 114 QSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCGLLYTASWDRTFKVWRIS-DSKCLESV 192 (368)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~-~~~~~~~~ 192 (368)
+... .....+|.++.+.++ .|++.- .+.|.+|... ..+.++.+
T Consensus 87 ~i~e---------------------------------l~f~~~I~~V~l~r~--riVvvl-~~~I~VytF~~n~k~l~~~ 130 (346)
T KOG2111|consen 87 CIIE---------------------------------LSFNSEIKAVKLRRD--RIVVVL-ENKIYVYTFPDNPKLLHVI 130 (346)
T ss_pred EEEE---------------------------------EEeccceeeEEEcCC--eEEEEe-cCeEEEEEcCCChhheeee
Confidence 2111 126688999999876 566665 4789999987 44555555
Q ss_pred ecC--CCceEEEEeCCCC-eEE-EEcCCCeEEEEEcCCCCCCcccccceeeccccccEEEEEEcCCCCEEEEecCCCc-E
Q 047325 193 SAH--DDAVNSVVSSSEG-LIF-TGSADGTVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSSSRSIVYCGSSDGL-V 267 (368)
Q Consensus 193 ~~~--~~~v~~~~~~~~~-~l~-~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~-i 267 (368)
... ...+.+++-..+. .|+ -|-.-|.|.+-|+..... .....+..|.+.|.|++.+.+|..+|+++..|+ |
T Consensus 131 et~~NPkGlC~~~~~~~k~~LafPg~k~GqvQi~dL~~~~~----~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLI 206 (346)
T KOG2111|consen 131 ETRSNPKGLCSLCPTSNKSLLAFPGFKTGQVQIVDLASTKP----NAPSIINAHDSDIACVALNLQGTLVATASTKGTLI 206 (346)
T ss_pred ecccCCCceEeecCCCCceEEEcCCCccceEEEEEhhhcCc----CCceEEEcccCceeEEEEcCCccEEEEeccCcEEE
Confidence 432 2234444433333 333 345679999999986532 134677889999999999999999999999997 7
Q ss_pred EEEeCCCccccceeeecc---ceEEEEEEeCCCEEEEeeCCCeEEEEecCC
Q 047325 268 NFWEREKQLSHGGVLKGH---KLAVLCLAAAGKLVFSGSADKTICVWRRDG 315 (368)
Q Consensus 268 ~i~d~~~~~~~~~~~~~~---~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~ 315 (368)
+|||.+++..+....++- ....++|+|+..+|+++|+-|+|+||.+..
T Consensus 207 RIFdt~~g~~l~E~RRG~d~A~iy~iaFSp~~s~LavsSdKgTlHiF~l~~ 257 (346)
T KOG2111|consen 207 RIFDTEDGTLLQELRRGVDRADIYCIAFSPNSSWLAVSSDKGTLHIFSLRD 257 (346)
T ss_pred EEEEcCCCcEeeeeecCCchheEEEEEeCCCccEEEEEcCCCeEEEEEeec
Confidence 999999988775554442 233366778999999999999999998854
No 224
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.64 E-value=3.3e-13 Score=105.96 Aligned_cols=235 Identities=16% Similarity=0.194 Sum_probs=155.5
Q ss_pred CCcEEEEEecCC---EEEEccCCCcEEEEcCCcc----------------eecccCCCCCeeEEEEe--CCEEEEEeC-C
Q 047325 44 EGHIYSLAASKD---LLYTGSDSKNIRVWKNLKE----------------FCGFKASSGLVKAIVIS--GEKIFTGHQ-D 101 (368)
Q Consensus 44 ~~~i~~~~~~~~---~l~s~~~dg~i~iw~~~~~----------------~~~~~~~~~~v~~~~~~--~~~l~s~~~-d 101 (368)
...|+|++|-|. .|+.|+..| |.+|..... +....+| .+|+++.|+ |..+++++. |
T Consensus 140 QrnvtclawRPlsaselavgCr~g-IciW~~s~tln~~r~~~~~s~~~~qvl~~pgh-~pVtsmqwn~dgt~l~tAS~gs 217 (445)
T KOG2139|consen 140 QRNVTCLAWRPLSASELAVGCRAG-ICIWSDSRTLNANRNIRMMSTHHLQVLQDPGH-NPVTSMQWNEDGTILVTASFGS 217 (445)
T ss_pred hcceeEEEeccCCcceeeeeecce-eEEEEcCcccccccccccccccchhheeCCCC-ceeeEEEEcCCCCEEeecccCc
Confidence 356999999644 888888766 889964311 2223455 689999998 778888775 6
Q ss_pred CeEEEEeecCCCccccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcCCCCEEEEEeCCCcEEEE
Q 047325 102 GKIRVWKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCGLLYTASWDRTFKVW 181 (368)
Q Consensus 102 g~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iw 181 (368)
..|.|||.+++........ -.+.+.-+.|+||+.+|+++.-|+..++|
T Consensus 218 ssi~iWdpdtg~~~pL~~~--------------------------------glgg~slLkwSPdgd~lfaAt~davfrlw 265 (445)
T KOG2139|consen 218 SSIMIWDPDTGQKIPLIPK--------------------------------GLGGFSLLKWSPDGDVLFAATCDAVFRLW 265 (445)
T ss_pred ceEEEEcCCCCCccccccc--------------------------------CCCceeeEEEcCCCCEEEEecccceeeee
Confidence 7899999999876544422 34677889999999999999999999999
Q ss_pred EccCCeEEEEeecCCCceEEEEeCCCC--eEEEEcCCCeEEEEEcCCCCCCccc---------ccceee-----c----c
Q 047325 182 RISDSKCLESVSAHDDAVNSVVSSSEG--LIFTGSADGTVKVWKREQHGKGTKH---------SLAQTL-----L----K 241 (368)
Q Consensus 182 d~~~~~~~~~~~~~~~~v~~~~~~~~~--~l~~~~~dg~i~i~d~~~~~~~~~~---------~~~~~~-----~----~ 241 (368)
+.....-.....-..+.|...+|+|.| +|++.+..-.+ |.+...++.... .++..+ . .
T Consensus 266 ~e~q~wt~erw~lgsgrvqtacWspcGsfLLf~~sgsp~l--ysl~f~~~~~~~~~~~~~k~~lliaDL~e~ti~ag~~l 343 (445)
T KOG2139|consen 266 QENQSWTKERWILGSGRVQTACWSPCGSFLLFACSGSPRL--YSLTFDGEDSVFLRPQSIKRVLLIADLQEVTICAGQRL 343 (445)
T ss_pred hhcccceecceeccCCceeeeeecCCCCEEEEEEcCCceE--EEEeecCCCccccCcccceeeeeeccchhhhhhcCccc
Confidence 654433222233345589999999999 56666544444 433222211000 000000 0 1
Q ss_pred ccccEEEEEEcCCCCEEEEecCCCc--------EEEEeCCCccccc----eeeeccceEEEEEEe---CCCEEEEeeCCC
Q 047325 242 QECAVTALVVSSSRSIVYCGSSDGL--------VNFWEREKQLSHG----GVLKGHKLAVLCLAA---AGKLVFSGSADK 306 (368)
Q Consensus 242 ~~~~i~~~~~~~~~~~l~~~~~dg~--------i~i~d~~~~~~~~----~~~~~~~~~~~~~~~---~~~~l~~~~~dg 306 (368)
..+.+.+++|.|.|.+|++.-..+. |.+||.+...... ....+.....++|.| ++.+|..+-..|
T Consensus 344 ~cgeaq~lawDpsGeyLav~fKg~~~v~~~k~~i~~fdtr~sp~vels~cg~i~ge~P~~IsF~pl~n~g~lLsiaWsTG 423 (445)
T KOG2139|consen 344 CCGEAQCLAWDPSGEYLAVIFKGQSFVLLCKLHISRFDTRKSPPVELSYCGMIGGEYPAYISFGPLKNEGRLLSIAWSTG 423 (445)
T ss_pred ccCccceeeECCCCCEEEEEEcCCchhhhhhhhhhhhcccccCceEEEecccccCCCCceEEeeecccCCcEEEEEeccC
Confidence 1467899999999999998765443 6677776533221 122233334466776 577888888889
Q ss_pred eEEEEecC
Q 047325 307 TICVWRRD 314 (368)
Q Consensus 307 ~i~iw~~~ 314 (368)
.+.-|++.
T Consensus 424 riq~ypl~ 431 (445)
T KOG2139|consen 424 RIQRYPLT 431 (445)
T ss_pred ceEeeeeE
Confidence 88888654
No 225
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.64 E-value=1.2e-13 Score=119.47 Aligned_cols=185 Identities=15% Similarity=0.112 Sum_probs=120.3
Q ss_pred cCCCEeEEEEcCCCCEEEEEeCC---CcEEEEEccCCeEEEEeecCCCceEEEEeCCCC-eEE-EEcCCCeEEEEEcCCC
Q 047325 153 HSDAVSCMSLDQDCGLLYTASWD---RTFKVWRISDSKCLESVSAHDDAVNSVVSSSEG-LIF-TGSADGTVKVWKREQH 227 (368)
Q Consensus 153 ~~~~v~~~~~~~~~~~l~~~~~d---~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~-~~~~dg~i~i~d~~~~ 227 (368)
+...+.+.+|+||++.|+..+.+ ..|.+||+.+++... +....+.+....|+||| .|+ +.+.+|...+|.++..
T Consensus 194 ~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~-l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~ 272 (427)
T PRK02889 194 SPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRV-VANFKGSNSAPAWSPDGRTLAVALSRDGNSQIYTVNAD 272 (427)
T ss_pred CCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEE-eecCCCCccceEECCCCCEEEEEEccCCCceEEEEECC
Confidence 66778899999999998877643 359999999887543 33334556788999999 554 5677887777665432
Q ss_pred CCCcccccceeeccccccEEEEEEcCCCCEEEEecC-CCcEEEEeC--CCccccceeeeccceEEEEEEeCCCEEEEeeC
Q 047325 228 GKGTKHSLAQTLLKQECAVTALVVSSSRSIVYCGSS-DGLVNFWER--EKQLSHGGVLKGHKLAVLCLAAAGKLVFSGSA 304 (368)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-dg~i~i~d~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 304 (368)
.. ....+..+........|+|||+.|+..+. +|...+|.+ .++........+.......++|||++|+..+.
T Consensus 273 ~~-----~~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~~~lt~~g~~~~~~~~SpDG~~Ia~~s~ 347 (427)
T PRK02889 273 GS-----GLRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAAQRVTFTGSYNTSPRISPDGKLLAYISR 347 (427)
T ss_pred CC-----CcEECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCceEEEecCCCCcCceEECCCCCEEEEEEc
Confidence 21 12333334444567889999998876553 455566654 44332211222222223578999999987765
Q ss_pred CC---eEEEEecCCCceeeeEeeeccccCeeEEEEecCCeeeecCC
Q 047325 305 DK---TICVWRRDGAIHTCLSVLTGHTGPVKCLAVEEDRDSSSSTS 347 (368)
Q Consensus 305 dg---~i~iw~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~ 347 (368)
++ .|.+||+.++.... +.. ........|+|||+.++.+.
T Consensus 348 ~~g~~~I~v~d~~~g~~~~---lt~-~~~~~~p~~spdg~~l~~~~ 389 (427)
T PRK02889 348 VGGAFKLYVQDLATGQVTA---LTD-TTRDESPSFAPNGRYILYAT 389 (427)
T ss_pred cCCcEEEEEEECCCCCeEE---ccC-CCCccCceECCCCCEEEEEE
Confidence 54 69999987764332 222 22346789999999877654
No 226
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.63 E-value=2e-13 Score=117.99 Aligned_cols=183 Identities=10% Similarity=0.017 Sum_probs=118.0
Q ss_pred cCCCEeEEEEcCCCCEEEEEeC---CCcEEEEEccCCeEEEEeecCCCceEEEEeCCCC-eEEE-EcCCC--eEEEEEcC
Q 047325 153 HSDAVSCMSLDQDCGLLYTASW---DRTFKVWRISDSKCLESVSAHDDAVNSVVSSSEG-LIFT-GSADG--TVKVWKRE 225 (368)
Q Consensus 153 ~~~~v~~~~~~~~~~~l~~~~~---d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~-~~~dg--~i~i~d~~ 225 (368)
+...+...+|+|||+.|+..+. +..|.+||+.+++..... .....+....|+||| .|+. ...+| .|++||+.
T Consensus 197 ~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~l~-~~~~~~~~~~~SPDG~~La~~~~~~g~~~I~~~d~~ 275 (429)
T PRK03629 197 SPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVA-SFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLA 275 (429)
T ss_pred CCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEEcc-CCCCCcCCeEECCCCCEEEEEEcCCCCcEEEEEECC
Confidence 5567889999999998886542 357999999887643322 223334568999999 5554 34444 58889987
Q ss_pred CCCCCcccccceeeccccccEEEEEEcCCCCEEEEecCC-Cc--EEEEeCCCccccceeeeccceEEEEEEeCCCEEEEe
Q 047325 226 QHGKGTKHSLAQTLLKQECAVTALVVSSSRSIVYCGSSD-GL--VNFWEREKQLSHGGVLKGHKLAVLCLAAAGKLVFSG 302 (368)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d-g~--i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 302 (368)
.+. ...+..+...+....|+|+++.|+..+.+ +. |+++|+.++........+.......++|||++|+..
T Consensus 276 tg~-------~~~lt~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~~~lt~~~~~~~~~~~SpDG~~Ia~~ 348 (429)
T PRK03629 276 SGQ-------IRQVTDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAPQRITWEGSQNQDADVSSDGKFMVMV 348 (429)
T ss_pred CCC-------EEEccCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCeEEeecCCCCccCEEECCCCCEEEEE
Confidence 542 22333344567789999999988776654 44 555566654332212222233346788999988776
Q ss_pred eCC---CeEEEEecCCCceeeeEeeeccccCeeEEEEecCCeeeecCC
Q 047325 303 SAD---KTICVWRRDGAIHTCLSVLTGHTGPVKCLAVEEDRDSSSSTS 347 (368)
Q Consensus 303 ~~d---g~i~iw~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~ 347 (368)
+.+ ..|.+||++++....+. . ........|+|||+.++.++
T Consensus 349 ~~~~g~~~I~~~dl~~g~~~~Lt---~-~~~~~~p~~SpDG~~i~~~s 392 (429)
T PRK03629 349 SSNGGQQHIAKQDLATGGVQVLT---D-TFLDETPSIAPNGTMVIYSS 392 (429)
T ss_pred EccCCCceEEEEECCCCCeEEeC---C-CCCCCCceECCCCCEEEEEE
Confidence 543 35888888776433322 1 12234678999999887665
No 227
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.63 E-value=9.6e-14 Score=120.09 Aligned_cols=233 Identities=14% Similarity=0.104 Sum_probs=143.8
Q ss_pred CcEEEEcCCcc-eecccCCCCCeeEEEEe--CCEEEEEeCC---CeEEEEeecCCCccccccCCccccceeeeeccCCCC
Q 047325 64 KNIRVWKNLKE-FCGFKASSGLVKAIVIS--GEKIFTGHQD---GKIRVWKISPKNQSVHKRAGTLPTLKDIFKSSIKPS 137 (368)
Q Consensus 64 g~i~iw~~~~~-~~~~~~~~~~v~~~~~~--~~~l~s~~~d---g~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (368)
..|.++|.... ...+..+...+.+.+|+ |+.|+..+.+ ..|.+||+.+++.....
T Consensus 176 ~~L~~~D~dG~~~~~l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~l~------------------- 236 (427)
T PRK02889 176 YQLQISDADGQNAQSALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRVVA------------------- 236 (427)
T ss_pred cEEEEECCCCCCceEeccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEEee-------------------
Confidence 45777776532 34455677788888887 7778776643 35999999877532211
Q ss_pred ceeEecccceeeeeecCCCEeEEEEcCCCCEEE-EEeCCCcEEEEE--ccCCeEEEEeecCCCceEEEEeCCCC-eEEEE
Q 047325 138 NYIEVRRHRTALWIRHSDAVSCMSLDQDCGLLY-TASWDRTFKVWR--ISDSKCLESVSAHDDAVNSVVSSSEG-LIFTG 213 (368)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~d~~i~iwd--~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~ 213 (368)
.....+....|+||++.|+ +.+.++...||. +..+. ...+..+........|+||| .|+..
T Consensus 237 --------------~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~-~~~lt~~~~~~~~~~wSpDG~~l~f~ 301 (427)
T PRK02889 237 --------------NFKGSNSAPAWSPDGRTLAVALSRDGNSQIYTVNADGSG-LRRLTQSSGIDTEPFFSPDGRSIYFT 301 (427)
T ss_pred --------------cCCCCccceEECCCCCEEEEEEccCCCceEEEEECCCCC-cEECCCCCCCCcCeEEcCCCCEEEEE
Confidence 1223456789999998876 456777766665 44443 44555555556678899999 55544
Q ss_pred c-CCCeEEEEEcCCCCCCcccccceeeccccccEEEEEEcCCCCEEEEecCCC---cEEEEeCCCccccceeeeccceEE
Q 047325 214 S-ADGTVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSSSRSIVYCGSSDG---LVNFWEREKQLSHGGVLKGHKLAV 289 (368)
Q Consensus 214 ~-~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg---~i~i~d~~~~~~~~~~~~~~~~~~ 289 (368)
+ .+|...+|.+..... ....+...........|+|+|++|+..+.++ .|.+||+.++... ..........
T Consensus 302 s~~~g~~~Iy~~~~~~g-----~~~~lt~~g~~~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~~-~lt~~~~~~~ 375 (427)
T PRK02889 302 SDRGGAPQIYRMPASGG-----AAQRVTFTGSYNTSPRISPDGKLLAYISRVGGAFKLYVQDLATGQVT-ALTDTTRDES 375 (427)
T ss_pred ecCCCCcEEEEEECCCC-----ceEEEecCCCCcCceEECCCCCEEEEEEccCCcEEEEEEECCCCCeE-EccCCCCccC
Confidence 4 456667776543221 0111111222334678999999998776554 5999998865433 1222222344
Q ss_pred EEEEeCCCEEEEeeCCC-e--EEEEecCCCceeeeEeeeccccCeeEEEEecC
Q 047325 290 LCLAAAGKLVFSGSADK-T--ICVWRRDGAIHTCLSVLTGHTGPVKCLAVEED 339 (368)
Q Consensus 290 ~~~~~~~~~l~~~~~dg-~--i~iw~~~~~~~~~~~~~~~h~~~v~~l~~~~~ 339 (368)
..++||++.|+.++.++ . +.+.+++. .....+..+.+.+...+|+|-
T Consensus 376 p~~spdg~~l~~~~~~~g~~~l~~~~~~g---~~~~~l~~~~g~~~~p~wsp~ 425 (427)
T PRK02889 376 PSFAPNGRYILYATQQGGRSVLAAVSSDG---RIKQRLSVQGGDVREPSWGPF 425 (427)
T ss_pred ceECCCCCEEEEEEecCCCEEEEEEECCC---CceEEeecCCCCCCCCccCCC
Confidence 67899999888776544 3 44444433 334445556667778888874
No 228
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.62 E-value=1.6e-13 Score=119.11 Aligned_cols=230 Identities=15% Similarity=0.086 Sum_probs=146.1
Q ss_pred CcEEEEcCCcc-eecccCCCCCeeEEEEe--CCEEEEEeCC---CeEEEEeecCCCccccccCCccccceeeeeccCCCC
Q 047325 64 KNIRVWKNLKE-FCGFKASSGLVKAIVIS--GEKIFTGHQD---GKIRVWKISPKNQSVHKRAGTLPTLKDIFKSSIKPS 137 (368)
Q Consensus 64 g~i~iw~~~~~-~~~~~~~~~~v~~~~~~--~~~l~s~~~d---g~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (368)
..|.+||.... ...+..+...+.+..|+ ++.|+..+.+ ..|.+||+.+++......
T Consensus 184 ~~l~i~D~~g~~~~~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~l~~------------------ 245 (433)
T PRK04922 184 YALQVADSDGYNPQTILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQRELVAS------------------ 245 (433)
T ss_pred EEEEEECCCCCCceEeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEEecc------------------
Confidence 36888987633 44566677788888887 7788877643 469999997765321111
Q ss_pred ceeEecccceeeeeecCCCEeEEEEcCCCCEEE-EEeCCC--cEEEEEccCCeEEEEeecCCCceEEEEeCCCC-eEEEE
Q 047325 138 NYIEVRRHRTALWIRHSDAVSCMSLDQDCGLLY-TASWDR--TFKVWRISDSKCLESVSAHDDAVNSVVSSSEG-LIFTG 213 (368)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~d~--~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~ 213 (368)
......+..|+|+++.|+ +.+.+| .|.+||+.+++.. .+..+........|+|++ .|+..
T Consensus 246 ---------------~~g~~~~~~~SpDG~~l~~~~s~~g~~~Iy~~d~~~g~~~-~lt~~~~~~~~~~~spDG~~l~f~ 309 (433)
T PRK04922 246 ---------------FRGINGAPSFSPDGRRLALTLSRDGNPEIYVMDLGSRQLT-RLTNHFGIDTEPTWAPDGKSIYFT 309 (433)
T ss_pred ---------------CCCCccCceECCCCCEEEEEEeCCCCceEEEEECCCCCeE-ECccCCCCccceEECCCCCEEEEE
Confidence 223345689999998775 445555 5999999887654 444455555678999999 56555
Q ss_pred c-CCCe--EEEEEcCCCCCCcccccceeeccccccEEEEEEcCCCCEEEEecCCC---cEEEEeCCCccccceeeeccce
Q 047325 214 S-ADGT--VKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSSSRSIVYCGSSDG---LVNFWEREKQLSHGGVLKGHKL 287 (368)
Q Consensus 214 ~-~dg~--i~i~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg---~i~i~d~~~~~~~~~~~~~~~~ 287 (368)
+ .+|. |+++|+..+. ...+..........+|+|+|++|+..+.++ .|.+||+.++... ....+...
T Consensus 310 sd~~g~~~iy~~dl~~g~-------~~~lt~~g~~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~~-~Lt~~~~~ 381 (433)
T PRK04922 310 SDRGGRPQIYRVAASGGS-------AERLTFQGNYNARASVSPDGKKIAMVHGSGGQYRIAVMDLSTGSVR-TLTPGSLD 381 (433)
T ss_pred ECCCCCceEEEEECCCCC-------eEEeecCCCCccCEEECCCCCEEEEEECCCCceeEEEEECCCCCeE-ECCCCCCC
Confidence 4 4554 6666665431 111212223345689999999988765443 5899998765433 12222222
Q ss_pred EEEEEEeCCCEEEEeeCC---CeEEEEecCCCceeeeEeeeccccCeeEEEEec
Q 047325 288 AVLCLAAAGKLVFSGSAD---KTICVWRRDGAIHTCLSVLTGHTGPVKCLAVEE 338 (368)
Q Consensus 288 ~~~~~~~~~~~l~~~~~d---g~i~iw~~~~~~~~~~~~~~~h~~~v~~l~~~~ 338 (368)
.-..+++||++|+..+.+ +.|.+++++.. ....+..+.+.+...+|+|
T Consensus 382 ~~p~~spdG~~i~~~s~~~g~~~L~~~~~~g~---~~~~l~~~~g~~~~p~wsp 432 (433)
T PRK04922 382 ESPSFAPNGSMVLYATREGGRGVLAAVSTDGR---VRQRLVSADGEVREPAWSP 432 (433)
T ss_pred CCceECCCCCEEEEEEecCCceEEEEEECCCC---ceEEcccCCCCCCCCccCC
Confidence 335788999987776653 35777776543 3344444556677778876
No 229
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.61 E-value=1.4e-13 Score=119.57 Aligned_cols=191 Identities=14% Similarity=0.055 Sum_probs=124.4
Q ss_pred cCCCEeEEEEcCCCCEEEEEeCC---CcEEEEEccCCeEEEEeecCCCceEEEEeCCCC-eE-EEEcCCC--eEEEEEcC
Q 047325 153 HSDAVSCMSLDQDCGLLYTASWD---RTFKVWRISDSKCLESVSAHDDAVNSVVSSSEG-LI-FTGSADG--TVKVWKRE 225 (368)
Q Consensus 153 ~~~~v~~~~~~~~~~~l~~~~~d---~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l-~~~~~dg--~i~i~d~~ 225 (368)
+...+.+.+|+||++.|+..+.+ ..|.+||+.+++... +....+...+..|+|+| .+ ++.+.+| .|++||+.
T Consensus 202 ~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~-l~~~~g~~~~~~~SpDG~~l~~~~s~~g~~~Iy~~d~~ 280 (433)
T PRK04922 202 SAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQREL-VASFRGINGAPSFSPDGRRLALTLSRDGNPEIYVMDLG 280 (433)
T ss_pred CCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEE-eccCCCCccCceECCCCCEEEEEEeCCCCceEEEEECC
Confidence 66678899999999998887643 469999998876543 33334445578999999 45 4445555 69999987
Q ss_pred CCCCCcccccceeeccccccEEEEEEcCCCCEEEEecC-CCc--EEEEeCCCccccceeeeccceEEEEEEeCCCEEEEe
Q 047325 226 QHGKGTKHSLAQTLLKQECAVTALVVSSSRSIVYCGSS-DGL--VNFWEREKQLSHGGVLKGHKLAVLCLAAAGKLVFSG 302 (368)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-dg~--i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 302 (368)
.+. ...+..+.......+|+|+++.|+..+. +|. |+++|+.++........+......+++|+|++|+..
T Consensus 281 ~g~-------~~~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~~lt~~g~~~~~~~~SpDG~~Ia~~ 353 (433)
T PRK04922 281 SRQ-------LTRLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSAERLTFQGNYNARASVSPDGKKIAMV 353 (433)
T ss_pred CCC-------eEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCeEEeecCCCCccCEEECCCCCEEEEE
Confidence 642 2333344444567899999998887653 444 666777654432222223333346889999998876
Q ss_pred eCCC---eEEEEecCCCceeeeEeeeccccCeeEEEEecCCeeeecCC---cceEEEEE
Q 047325 303 SADK---TICVWRRDGAIHTCLSVLTGHTGPVKCLAVEEDRDSSSSTS---SCAQRWIV 355 (368)
Q Consensus 303 ~~dg---~i~iw~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~---~~~~~w~l 355 (368)
+.++ .|.+||+.++... .+. +........|+|||+.++... +...+|.+
T Consensus 354 ~~~~~~~~I~v~d~~~g~~~---~Lt-~~~~~~~p~~spdG~~i~~~s~~~g~~~L~~~ 408 (433)
T PRK04922 354 HGSGGQYRIAVMDLSTGSVR---TLT-PGSLDESPSFAPNGSMVLYATREGGRGVLAAV 408 (433)
T ss_pred ECCCCceeEEEEECCCCCeE---ECC-CCCCCCCceECCCCCEEEEEEecCCceEEEEE
Confidence 5433 5899998776333 222 223455679999999776543 23445444
No 230
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.61 E-value=5e-13 Score=116.22 Aligned_cols=182 Identities=13% Similarity=0.056 Sum_probs=122.1
Q ss_pred cCCCEeEEEEcCCCCEEEEEeC---CCcEEEEEccCCeEEEEeecCCCceEEEEeCCCC-eE-EEEcCCCe--EEEEEcC
Q 047325 153 HSDAVSCMSLDQDCGLLYTASW---DRTFKVWRISDSKCLESVSAHDDAVNSVVSSSEG-LI-FTGSADGT--VKVWKRE 225 (368)
Q Consensus 153 ~~~~v~~~~~~~~~~~l~~~~~---d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l-~~~~~dg~--i~i~d~~ 225 (368)
+...+.+..|+|||+.|+..+. +..|.+||+.+++.. .+..+.+.+....|+|+| .| ++.+.++. |++||+.
T Consensus 200 ~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~-~l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~ 278 (435)
T PRK05137 200 GSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRE-LVGNFPGMTFAPRFSPDGRKVVMSLSQGGNTDIYTMDLR 278 (435)
T ss_pred CCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEE-EeecCCCcccCcEECCCCCEEEEEEecCCCceEEEEECC
Confidence 7778999999999998887763 468999999888654 344456677788999999 54 45555554 7777876
Q ss_pred CCCCCcccccceeeccccccEEEEEEcCCCCEEEEecC-CC--cEEEEeCCCccccceeeeccceEEEEEEeCCCEEEEe
Q 047325 226 QHGKGTKHSLAQTLLKQECAVTALVVSSSRSIVYCGSS-DG--LVNFWEREKQLSHGGVLKGHKLAVLCLAAAGKLVFSG 302 (368)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-dg--~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 302 (368)
... ...+..+........|+||++.|+..+. +| .|+++|+..+................++|+|+.|+..
T Consensus 279 ~~~-------~~~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~~~lt~~~~~~~~~~~SpdG~~ia~~ 351 (435)
T PRK05137 279 SGT-------TTRLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNPRRISFGGGRYSTPVWSPRGDLIAFT 351 (435)
T ss_pred CCc-------eEEccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCeEEeecCCCcccCeEECCCCCEEEEE
Confidence 542 2334445555677899999998887653 33 6888887765332111111122235688999998876
Q ss_pred eCC---CeEEEEecCCCceeeeEeeeccccCeeEEEEecCCeeeecC
Q 047325 303 SAD---KTICVWRRDGAIHTCLSVLTGHTGPVKCLAVEEDRDSSSST 346 (368)
Q Consensus 303 ~~d---g~i~iw~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~ 346 (368)
..+ ..|.+||++..... .+. ....+....|+|||+.++..
T Consensus 352 ~~~~~~~~i~~~d~~~~~~~---~lt-~~~~~~~p~~spDG~~i~~~ 394 (435)
T PRK05137 352 KQGGGQFSIGVMKPDGSGER---ILT-SGFLVEGPTWAPNGRVIMFF 394 (435)
T ss_pred EcCCCceEEEEEECCCCceE---ecc-CCCCCCCCeECCCCCEEEEE
Confidence 543 35788887554222 222 22346788999999987654
No 231
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.60 E-value=8.5e-13 Score=114.81 Aligned_cols=229 Identities=10% Similarity=0.033 Sum_probs=146.3
Q ss_pred CcEEEEcCCcc-eecccCCCCCeeEEEEe--CCEEEEEeC---CCeEEEEeecCCCccccccCCccccceeeeeccCCCC
Q 047325 64 KNIRVWKNLKE-FCGFKASSGLVKAIVIS--GEKIFTGHQ---DGKIRVWKISPKNQSVHKRAGTLPTLKDIFKSSIKPS 137 (368)
Q Consensus 64 g~i~iw~~~~~-~~~~~~~~~~v~~~~~~--~~~l~s~~~---dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (368)
..|.++|.... ...+..|...+.+..|+ |+.|+..+. +..|.+||+.+++....
T Consensus 182 ~~l~~~d~dg~~~~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~~l-------------------- 241 (435)
T PRK05137 182 KRLAIMDQDGANVRYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRELV-------------------- 241 (435)
T ss_pred eEEEEECCCCCCcEEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEEEe--------------------
Confidence 37888887643 34566788889999998 777777653 46899999987653211
Q ss_pred ceeEecccceeeeeecCCCEeEEEEcCCCCEEE-EEeCCCc--EEEEEccCCeEEEEeecCCCceEEEEeCCCC-eEEEE
Q 047325 138 NYIEVRRHRTALWIRHSDAVSCMSLDQDCGLLY-TASWDRT--FKVWRISDSKCLESVSAHDDAVNSVVSSSEG-LIFTG 213 (368)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~d~~--i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~ 213 (368)
..+...+....|+|||+.|+ +.+.++. |.+||+.+++.. .+..+........|+|++ .++..
T Consensus 242 -------------~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~~-~Lt~~~~~~~~~~~spDG~~i~f~ 307 (435)
T PRK05137 242 -------------GNFPGMTFAPRFSPDGRKVVMSLSQGGNTDIYTMDLRSGTTT-RLTDSPAIDTSPSYSPDGSQIVFE 307 (435)
T ss_pred -------------ecCCCcccCcEECCCCCEEEEEEecCCCceEEEEECCCCceE-EccCCCCccCceeEcCCCCEEEEE
Confidence 11445667889999998775 5555554 777798877653 455555566778999999 55555
Q ss_pred c-CCC--eEEEEEcCCCCCCcccccceeeccccccEEEEEEcCCCCEEEEecCC---CcEEEEeCCCccccceeeeccce
Q 047325 214 S-ADG--TVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSSSRSIVYCGSSD---GLVNFWEREKQLSHGGVLKGHKL 287 (368)
Q Consensus 214 ~-~dg--~i~i~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d---g~i~i~d~~~~~~~~~~~~~~~~ 287 (368)
+ .+| .|+++|+.... ...+......+....|+|+++.|+....+ ..|.+||+..+... ....+...
T Consensus 308 s~~~g~~~Iy~~d~~g~~-------~~~lt~~~~~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~~~-~lt~~~~~ 379 (435)
T PRK05137 308 SDRSGSPQLYVMNADGSN-------PRRISFGGGRYSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSGER-ILTSGFLV 379 (435)
T ss_pred ECCCCCCeEEEEECCCCC-------eEEeecCCCcccCeEECCCCCEEEEEEcCCCceEEEEEECCCCceE-eccCCCCC
Confidence 4 333 67788875431 22222234456678899999999876543 36888887654322 12122233
Q ss_pred EEEEEEeCCCEEEEeeCC------CeEEEEecCCCceeeeEeeeccccCeeEEEEec
Q 047325 288 AVLCLAAAGKLVFSGSAD------KTICVWRRDGAIHTCLSVLTGHTGPVKCLAVEE 338 (368)
Q Consensus 288 ~~~~~~~~~~~l~~~~~d------g~i~iw~~~~~~~~~~~~~~~h~~~v~~l~~~~ 338 (368)
....++|||+.|+..+.+ ..+.+++++.... ..+. ..+.+...+|+|
T Consensus 380 ~~p~~spDG~~i~~~~~~~~~~~~~~L~~~dl~g~~~---~~l~-~~~~~~~p~Wsp 432 (435)
T PRK05137 380 EGPTWAPNGRVIMFFRQTPGSGGAPKLYTVDLTGRNE---REVP-TPGDASDPAWSP 432 (435)
T ss_pred CCCeECCCCCEEEEEEccCCCCCcceEEEEECCCCce---EEcc-CCCCccCcccCC
Confidence 446789999988765442 2577777766532 2232 233456667766
No 232
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.60 E-value=1.6e-13 Score=104.60 Aligned_cols=149 Identities=13% Similarity=0.248 Sum_probs=104.0
Q ss_pred eEEEEcCCCCEEEEEeC----------CCcEEEEEccC-CeEEEEeec-CCCceEEEEeCCCC-eE--EEEcCCCeEEEE
Q 047325 158 SCMSLDQDCGLLYTASW----------DRTFKVWRISD-SKCLESVSA-HDDAVNSVVSSSEG-LI--FTGSADGTVKVW 222 (368)
Q Consensus 158 ~~~~~~~~~~~l~~~~~----------d~~i~iwd~~~-~~~~~~~~~-~~~~v~~~~~~~~~-~l--~~~~~dg~i~i~ 222 (368)
..+.|+|+|++|++-.. -+...+|.++. +.+...+.- ..++|.+++|+|++ .+ +.|..++.|.+|
T Consensus 9 ~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~ly 88 (194)
T PF08662_consen 9 AKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTLY 88 (194)
T ss_pred EEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEEccCCcccEEE
Confidence 35788999887765443 12355555532 234444433 34579999999999 44 345567899999
Q ss_pred EcCCCCCCcccccceeeccccccEEEEEEcCCCCEEEEecC---CCcEEEEeCCCccccceeeeccceEEEEEEeCCCEE
Q 047325 223 KREQHGKGTKHSLAQTLLKQECAVTALVVSSSRSIVYCGSS---DGLVNFWEREKQLSHGGVLKGHKLAVLCLAAAGKLV 299 (368)
Q Consensus 223 d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~---dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l 299 (368)
|++.. ....+ ....+..+.|+|+|++|++++. .|.|.+||.++.+.+ ...........+++|+|++|
T Consensus 89 d~~~~-------~i~~~--~~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~i-~~~~~~~~t~~~WsPdGr~~ 158 (194)
T PF08662_consen 89 DVKGK-------KIFSF--GTQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKKI-STFEHSDATDVEWSPDGRYL 158 (194)
T ss_pred cCccc-------EeEee--cCCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCEEe-eccccCcEEEEEEcCCCCEE
Confidence 99622 23333 3456789999999999999864 467999999976555 33344445568899999999
Q ss_pred EEeeC------CCeEEEEecCCC
Q 047325 300 FSGSA------DKTICVWRRDGA 316 (368)
Q Consensus 300 ~~~~~------dg~i~iw~~~~~ 316 (368)
+++.. |+.++||++...
T Consensus 159 ~ta~t~~r~~~dng~~Iw~~~G~ 181 (194)
T PF08662_consen 159 ATATTSPRLRVDNGFKIWSFQGR 181 (194)
T ss_pred EEEEeccceeccccEEEEEecCe
Confidence 99874 788999988653
No 233
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=99.60 E-value=1e-12 Score=100.42 Aligned_cols=266 Identities=11% Similarity=0.115 Sum_probs=169.5
Q ss_pred CCCcEEEEcCCccee-----cccCCCCCeeEEEEe-----CC-EEEEEeCCCeEEEEeecCCCccccccCCccccceeee
Q 047325 62 DSKNIRVWKNLKEFC-----GFKASSGLVKAIVIS-----GE-KIFTGHQDGKIRVWKISPKNQSVHKRAGTLPTLKDIF 130 (368)
Q Consensus 62 ~dg~i~iw~~~~~~~-----~~~~~~~~v~~~~~~-----~~-~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~ 130 (368)
.-|.+.++++..... ........+..+.|. +. .++-+-.+|.|.++...........+.-.....
T Consensus 44 R~Gkl~Lys~~d~~~~~l~~~q~~dts~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~ss~~L~~ls~~ki---- 119 (339)
T KOG0280|consen 44 RSGKLHLYSLEDMKLSPLDTLQCTDTSTEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDESSVHLRGLSSKKI---- 119 (339)
T ss_pred eccceEEEeecccccCccceeeeecccccceeeeeeccCCccceeeeccccceEEEEeeccceeeeeecccchhhh----
Confidence 346777887653211 112234456666665 44 566777789999988765543222211100000
Q ss_pred eccCCCCceeEecccceeeeeecCCCEeEEEEcCCCCEEEEEeCCCcEEEEEccCCeEE--EEeecCCCceEEEEeCCCC
Q 047325 131 KSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCGLLYTASWDRTFKVWRISDSKCL--ESVSAHDDAVNSVVSSSEG 208 (368)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~--~~~~~~~~~v~~~~~~~~~ 208 (368)
......++.|++.+..++++..+|.+.+-+....... +..+.|+.++....|+...
T Consensus 120 ----------------------~~~~~lslD~~~~~~~i~vs~s~G~~~~v~~t~~~le~vq~wk~He~E~Wta~f~~~~ 177 (339)
T KOG0280|consen 120 ----------------------SVVEALSLDISTSGTKIFVSDSRGSISGVYETEMVLEKVQTWKVHEFEAWTAKFSDKE 177 (339)
T ss_pred ----------------------hheeeeEEEeeccCceEEEEcCCCcEEEEecceeeeeecccccccceeeeeeecccCC
Confidence 1113457888998889999999999997766555443 4788999999999888765
Q ss_pred --eEEEEcCCCeEEEEEcCCCCCCcccccceeeccccccEEEEEEcC-CCCEEEEecCCCcEEEEeCCCccccc-eeeec
Q 047325 209 --LIFTGSADGTVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSS-SRSIVYCGSSDGLVNFWEREKQLSHG-GVLKG 284 (368)
Q Consensus 209 --~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~-~~~~~ 284 (368)
.+++|+.|+.+..||+|.++. ..-.....|...|.+|.-+| .+.++++|+.|..|++||.++..++. ....+
T Consensus 178 pnlvytGgDD~~l~~~D~R~p~~----~i~~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~kPl~~~~v~ 253 (339)
T KOG0280|consen 178 PNLVYTGGDDGSLSCWDIRIPKT----FIWHNSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGKPLFKAKVG 253 (339)
T ss_pred CceEEecCCCceEEEEEecCCcc----eeeecceeeecceEEEecCCCCCceEEEeccccceeeeehhcccCccccCccc
Confidence 899999999999999995432 23333566888999998887 57799999999999999999544332 22222
Q ss_pred cceEEEEEEeC--CCEEEEeeCCCeEEEEecCCCcee---eeEeeeccccCeeEEEEecCCeeeecCCcc----eEEEEE
Q 047325 285 HKLAVLCLAAA--GKLVFSGSADKTICVWRRDGAIHT---CLSVLTGHTGPVKCLAVEEDRDSSSSTSSC----AQRWIV 355 (368)
Q Consensus 285 ~~~~~~~~~~~--~~~l~~~~~dg~i~iw~~~~~~~~---~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~----~~~w~l 355 (368)
-......-+|. +.+|+++-.+| .+|-+......+ .....+.|.+-...-.|.....++|+++.. .++|..
T Consensus 254 GGVWRi~~~p~~~~~lL~~CMh~G-~ki~~~~~~~~e~~~~~~s~~~hdSl~YG~DWd~~~~~lATCsFYDk~~~~~Wl~ 332 (339)
T KOG0280|consen 254 GGVWRIKHHPEIFHRLLAACMHNG-AKILDSSDKVLEFQIVLPSDKIHDSLCYGGDWDSKDSFLATCSFYDKKIRQLWLH 332 (339)
T ss_pred cceEEEEecchhhhHHHHHHHhcC-ceEEEecccccchheeeeccccccceeeccccccccceeeeeeccccceeeeeee
Confidence 22222333442 44556655555 666666554333 445556677777777775555566765432 235666
Q ss_pred eeC
Q 047325 356 YSG 358 (368)
Q Consensus 356 ~sg 358 (368)
+|+
T Consensus 333 ~t~ 335 (339)
T KOG0280|consen 333 ITG 335 (339)
T ss_pred ccC
Confidence 654
No 234
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.58 E-value=2.6e-12 Score=99.81 Aligned_cols=287 Identities=13% Similarity=0.194 Sum_probs=171.8
Q ss_pred CcEEEEEecCC---EEEEccCCCcEEEEcCCcc--eecccCCCCCeeEEEEe--C-CEEEEEeCCCeEEEEeecCCCccc
Q 047325 45 GHIYSLAASKD---LLYTGSDSKNIRVWKNLKE--FCGFKASSGLVKAIVIS--G-EKIFTGHQDGKIRVWKISPKNQSV 116 (368)
Q Consensus 45 ~~i~~~~~~~~---~l~s~~~dg~i~iw~~~~~--~~~~~~~~~~v~~~~~~--~-~~l~s~~~dg~i~vw~~~~~~~~~ 116 (368)
+.|.-+.+.-+ .|.....|+.|.+|++.+. .+.......++.+++|+ | ..|.+...|-.|.+|.+.+.....
T Consensus 49 dki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpew~ckIdeg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~ 128 (447)
T KOG4497|consen 49 DKIVYIEWKADSCHILCVAYKDPKVQVWSLVQPEWYCKIDEGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYL 128 (447)
T ss_pred HHhhheeeeccceeeeeeeeccceEEEEEeecceeEEEeccCCCcceeeeECCCcceEeeeecceeEEEEEEeccceeEE
Confidence 34555666544 6677788999999999865 34566677789999998 5 467788889999999998876533
Q ss_pred cccCCccccceeeeeccCCCCc-eeEe-cccce---------------eeeeecCCCEeEEEEcCCCCEEEEEeCCCcEE
Q 047325 117 HKRAGTLPTLKDIFKSSIKPSN-YIEV-RRHRT---------------ALWIRHSDAVSCMSLDQDCGLLYTASWDRTFK 179 (368)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~---------------~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~ 179 (368)
......... ...+++.. +..+ .+... +.+.-.+-..+.+.|+|||+.|++
T Consensus 129 ~~~pK~~~k-----g~~f~~dg~f~ai~sRrDCkdyv~i~~c~~W~ll~~f~~dT~DltgieWsPdg~~laV-------- 195 (447)
T KOG4497|consen 129 LPHPKTNVK-----GYAFHPDGQFCAILSRRDCKDYVQISSCKAWILLKEFKLDTIDLTGIEWSPDGNWLAV-------- 195 (447)
T ss_pred ecccccCce-----eEEECCCCceeeeeecccHHHHHHHHhhHHHHHHHhcCCCcccccCceECCCCcEEEE--------
Confidence 322211110 00111111 1000 00000 011112334566777777665543
Q ss_pred EEEccCCeEEEEeecCCCceEEEEeCCCC-eEEEEcCCCeEEEEEcCCCCCC----------------------------
Q 047325 180 VWRISDSKCLESVSAHDDAVNSVVSSSEG-LIFTGSADGTVKVWKREQHGKG---------------------------- 230 (368)
Q Consensus 180 iwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~---------------------------- 230 (368)
||..-.-.+..+. ..-.+..++|+|.+ .|++|+.|+.+++.+--+-+..
T Consensus 196 -wd~~Leykv~aYe-~~lG~k~v~wsP~~qflavGsyD~~lrvlnh~tWk~f~eflhl~s~~dp~~~~~~ke~~~~~ql~ 273 (447)
T KOG4497|consen 196 -WDNVLEYKVYAYE-RGLGLKFVEWSPCNQFLAVGSYDQMLRVLNHFTWKPFGEFLHLCSYHDPTLHLLEKETFSIVQLL 273 (447)
T ss_pred -ecchhhheeeeee-eccceeEEEeccccceEEeeccchhhhhhceeeeeehhhhccchhccCchhhhhhhhhcchhhhc
Confidence 4322111111121 23467889999977 9999999999887642110000
Q ss_pred --------------------------------cccccceeeccccccEEEEEEcCCCCEEEEecCC--CcEEEEeCCCcc
Q 047325 231 --------------------------------TKHSLAQTLLKQECAVTALVVSSSRSIVYCGSSD--GLVNFWEREKQL 276 (368)
Q Consensus 231 --------------------------------~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d--g~i~i~d~~~~~ 276 (368)
...++.....+....+--++|++|..++++-... +.+-+||++..+
T Consensus 274 ~~cLsf~p~~~~a~~~~~se~~YE~~~~pv~~~~lkp~tD~pnPk~g~g~lafs~Ds~y~aTrnd~~PnalW~Wdlq~l~ 353 (447)
T KOG4497|consen 274 HHCLSFTPTDLEAHIWEESETIYEQQMTPVKVHKLKPPTDFPNPKCGAGKLAFSCDSTYAATRNDKYPNALWLWDLQNLK 353 (447)
T ss_pred ccccccCCCccccCccccchhhhhhhhcceeeecccCCCCCCCcccccceeeecCCceEEeeecCCCCceEEEEechhhh
Confidence 0000111122234467789999999998886543 568999999876
Q ss_pred ccceeeeccceEEEEEEeCCCEEEEeeCCCeEEEEecCCCceeeeEeeeccccCeeEEEEecCCeeeecCCcc
Q 047325 277 SHGGVLKGHKLAVLCLAAAGKLVFSGSADKTICVWRRDGAIHTCLSVLTGHTGPVKCLAVEEDRDSSSSTSSC 349 (368)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~ 349 (368)
........|......+.|....|+.+.....+++|..... ..+. ..+..-.|..+.|..+|..++-.+.+
T Consensus 354 l~avLiQk~piraf~WdP~~prL~vctg~srLY~W~psg~--~~V~-vP~~GF~i~~l~W~~~g~~i~l~~kD 423 (447)
T KOG4497|consen 354 LHAVLIQKHPIRAFEWDPGRPRLVVCTGKSRLYFWAPSGP--RVVG-VPKKGFNIQKLQWLQPGEFIVLCGKD 423 (447)
T ss_pred hhhhhhhccceeEEEeCCCCceEEEEcCCceEEEEcCCCc--eEEe-cCCCCceeeeEEecCCCcEEEEEcCC
Confidence 6655556666666666666677777777778999966543 3333 23344679999999999966544433
No 235
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.58 E-value=3.9e-13 Score=105.55 Aligned_cols=205 Identities=12% Similarity=0.139 Sum_probs=144.1
Q ss_pred CCCEeEEEEcCCCCEEEEEeCCCcEEEEEccCCeEEEEee-cCCCceEEEEeCCCC--eEEEEcCCCeEEEEEcCCCCCC
Q 047325 154 SDAVSCMSLDQDCGLLYTASWDRTFKVWRISDSKCLESVS-AHDDAVNSVVSSSEG--LIFTGSADGTVKVWKREQHGKG 230 (368)
Q Consensus 154 ~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~-~~~~~v~~~~~~~~~--~l~~~~~dg~i~i~d~~~~~~~ 230 (368)
...+..++|++.-..++++..|-.|++||-.+ +....++ .....|+|++|-|.+ .|+.|+.. .|.+|........
T Consensus 98 ~~dlr~~aWhqH~~~fava~nddvVriy~kss-t~pt~Lks~sQrnvtclawRPlsaselavgCr~-gIciW~~s~tln~ 175 (445)
T KOG2139|consen 98 EIDLRGVAWHQHIIAFAVATNDDVVRIYDKSS-TCPTKLKSVSQRNVTCLAWRPLSASELAVGCRA-GICIWSDSRTLNA 175 (445)
T ss_pred hcceeeEeechhhhhhhhhccCcEEEEeccCC-CCCceecchhhcceeEEEeccCCcceeeeeecc-eeEEEEcCccccc
Confidence 34678899999777889999999999999876 4444444 345679999999988 67776654 5889987543221
Q ss_pred cc--------cccceeeccccccEEEEEEcCCCCEEEEecC-CCcEEEEeCCCcccccee-eeccceEEEEEEeCCCEEE
Q 047325 231 TK--------HSLAQTLLKQECAVTALVVSSSRSIVYCGSS-DGLVNFWEREKQLSHGGV-LKGHKLAVLCLAAAGKLVF 300 (368)
Q Consensus 231 ~~--------~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-dg~i~i~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~ 300 (368)
.. ...+....+| .+|+++.|.+||..+++++- |..|.|||..++....-. ........+.++||+.+|+
T Consensus 176 ~r~~~~~s~~~~qvl~~pgh-~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~glgg~slLkwSPdgd~lf 254 (445)
T KOG2139|consen 176 NRNIRMMSTHHLQVLQDPGH-NPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLIPKGLGGFSLLKWSPDGDVLF 254 (445)
T ss_pred ccccccccccchhheeCCCC-ceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCcccccccCCCceeeEEEcCCCCEEE
Confidence 11 0111222333 78999999999999998874 568999999987654333 3334445789999999999
Q ss_pred EeeCCCeEEEEecCCCceeeeEeeeccccCeeEEEEecCCeeeec-CCcceEEEEEeeCCcccc
Q 047325 301 SGSADKTICVWRRDGAIHTCLSVLTGHTGPVKCLAVEEDRDSSSS-TSSCAQRWIVYSGSLDKS 363 (368)
Q Consensus 301 ~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~-~~~~~~~w~l~sg~~D~~ 363 (368)
++.-|+..++|+.... .... .+.--.+.|..-+|+|+|.++.. .++...++.+-.-+.|..
T Consensus 255 aAt~davfrlw~e~q~-wt~e-rw~lgsgrvqtacWspcGsfLLf~~sgsp~lysl~f~~~~~~ 316 (445)
T KOG2139|consen 255 AATCDAVFRLWQENQS-WTKE-RWILGSGRVQTACWSPCGSFLLFACSGSPRLYSLTFDGEDSV 316 (445)
T ss_pred Eecccceeeeehhccc-ceec-ceeccCCceeeeeecCCCCEEEEEEcCCceEEEEeecCCCcc
Confidence 9999999999954332 1222 22223458999999999997664 456666666655555443
No 236
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.58 E-value=5.7e-12 Score=105.81 Aligned_cols=248 Identities=11% Similarity=0.114 Sum_probs=152.8
Q ss_pred EEEEccCCCcEEEEcCCc--ceecccCCCCCeeEEEEe--CCEEEEEeCCCeEEEEeecCCCccccccCCccccceeeee
Q 047325 56 LLYTGSDSKNIRVWKNLK--EFCGFKASSGLVKAIVIS--GEKIFTGHQDGKIRVWKISPKNQSVHKRAGTLPTLKDIFK 131 (368)
Q Consensus 56 ~l~s~~~dg~i~iw~~~~--~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~ 131 (368)
++++-..+|.|.+.|..+ .+..+......-..+.++ ++++++++.||.|.++|+.+.+.......
T Consensus 8 ~~V~~~~~~~v~viD~~t~~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~----------- 76 (369)
T PF02239_consen 8 FYVVERGSGSVAVIDGATNKVVARIPTGGAPHAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKV----------- 76 (369)
T ss_dssp EEEEEGGGTEEEEEETTT-SEEEEEE-STTEEEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE------------
T ss_pred EEEEecCCCEEEEEECCCCeEEEEEcCCCCceeEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEec-----------
Confidence 445677789999999864 344555443333345565 78999999999999999999875444432
Q ss_pred ccCCCCceeEecccceeeeeecCCCEeEEEEcCCCCEEEEEe-CCCcEEEEEccCCeEEEEeecC-------CCceEEEE
Q 047325 132 SSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCGLLYTAS-WDRTFKVWRISDSKCLESVSAH-------DDAVNSVV 203 (368)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d~~i~iwd~~~~~~~~~~~~~-------~~~v~~~~ 203 (368)
.....++++++||++++++. .++.+.++|.++.++++.+... ...+..+.
T Consensus 77 ----------------------G~~~~~i~~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv 134 (369)
T PF02239_consen 77 ----------------------GGNPRGIAVSPDGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIV 134 (369)
T ss_dssp ----------------------SSEEEEEEE--TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEE
T ss_pred ----------------------CCCcceEEEcCCCCEEEEEecCCCceeEeccccccceeecccccccccccCCCceeEE
Confidence 34457899999999998775 5899999999999999887643 34677787
Q ss_pred eCCCC--eEEEEcCCCeEEEEEcCCCCCCcccccceeeccccccEEEEEEcCCCCEEEE-ecCCCcEEEEeCCCccccce
Q 047325 204 SSSEG--LIFTGSADGTVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSSSRSIVYC-GSSDGLVNFWEREKQLSHGG 280 (368)
Q Consensus 204 ~~~~~--~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~-~~~dg~i~i~d~~~~~~~~~ 280 (368)
.++.. ++++--..+.|.+.|...... ................|+|++++++. ...++.|.++|.++++....
T Consensus 135 ~s~~~~~fVv~lkd~~~I~vVdy~d~~~-----~~~~~i~~g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~k~v~~ 209 (369)
T PF02239_consen 135 ASPGRPEFVVNLKDTGEIWVVDYSDPKN-----LKVTTIKVGRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTGKLVAL 209 (369)
T ss_dssp E-SSSSEEEEEETTTTEEEEEETTTSSC-----EEEEEEE--TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTTEEEEE
T ss_pred ecCCCCEEEEEEccCCeEEEEEeccccc-----cceeeecccccccccccCcccceeeecccccceeEEEeeccceEEEE
Confidence 77777 444445568898888775422 22223334456778899999998766 45566788888765432211
Q ss_pred eee------------cc------------------------------------------c-eEEEEEEeCCCEEEEe---
Q 047325 281 VLK------------GH------------------------------------------K-LAVLCLAAAGKLVFSG--- 302 (368)
Q Consensus 281 ~~~------------~~------------------------------------------~-~~~~~~~~~~~~l~~~--- 302 (368)
... .| . .--...+|+++++++.
T Consensus 210 i~~g~~p~~~~~~~~php~~g~vw~~~~~~~~~~~~ig~~~v~v~d~~~wkvv~~I~~~G~glFi~thP~s~~vwvd~~~ 289 (369)
T PF02239_consen 210 IDTGKKPHPGPGANFPHPGFGPVWATSGLGYFAIPLIGTDPVSVHDDYAWKVVKTIPTQGGGLFIKTHPDSRYVWVDTFL 289 (369)
T ss_dssp EE-SSSBEETTEEEEEETTTEEEEEEEBSSSSEEEEEE--TTT-STTTBTSEEEEEE-SSSS--EE--TT-SEEEEE-TT
T ss_pred eeccccccccccccccCCCcceEEeeccccceecccccCCccccchhhcCeEEEEEECCCCcceeecCCCCccEEeeccC
Confidence 000 00 0 0012346788888887
Q ss_pred -eCCCeEEEEecCCCceeeeEeeecc-ccCeeEEEEecCCeee
Q 047325 303 -SADKTICVWRRDGAIHTCLSVLTGH-TGPVKCLAVEEDRDSS 343 (368)
Q Consensus 303 -~~dg~i~iw~~~~~~~~~~~~~~~h-~~~v~~l~~~~~~~~~ 343 (368)
..+++|.++|.++. +.+..+... ...+..+.|+++|..+
T Consensus 290 ~~~~~~v~viD~~tl--~~~~~i~~~~~~~~~h~ef~~dG~~v 330 (369)
T PF02239_consen 290 NPDADTVQVIDKKTL--KVVKTITPGPGKRVVHMEFNPDGKEV 330 (369)
T ss_dssp -SSHT-EEEEECCGT--EEEE-HHHHHT--EEEEEE-TTSSEE
T ss_pred CCCCceEEEEECcCc--ceeEEEeccCCCcEeccEECCCCCEE
Confidence 45588999988776 555555322 2359999999999953
No 237
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.56 E-value=1.7e-12 Score=99.06 Aligned_cols=112 Identities=12% Similarity=0.233 Sum_probs=85.2
Q ss_pred cCCCEeEEEEcCCCCEEEEE--eCCCcEEEEEccCCeEEEEeecCCCceEEEEeCCCC-eEEEEcC---CCeEEEEEcCC
Q 047325 153 HSDAVSCMSLDQDCGLLYTA--SWDRTFKVWRISDSKCLESVSAHDDAVNSVVSSSEG-LIFTGSA---DGTVKVWKREQ 226 (368)
Q Consensus 153 ~~~~v~~~~~~~~~~~l~~~--~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~---dg~i~i~d~~~ 226 (368)
..++|.+++|+|+++.|++. ..++.|.+||++ ++.+..+. ...++.+.|+|+| ++++++. .|.|.+||.+.
T Consensus 58 ~~~~I~~~~WsP~g~~favi~g~~~~~v~lyd~~-~~~i~~~~--~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~ 134 (194)
T PF08662_consen 58 KEGPIHDVAWSPNGNEFAVIYGSMPAKVTLYDVK-GKKIFSFG--TQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRK 134 (194)
T ss_pred CCCceEEEEECcCCCEEEEEEccCCcccEEEcCc-ccEeEeec--CCCceEEEECCCCCEEEEEEccCCCcEEEEEECCC
Confidence 34579999999999987655 356799999996 66676664 5677899999999 7777654 47799999985
Q ss_pred CCCCcccccceeeccccccEEEEEEcCCCCEEEEecC------CCcEEEEeCCCc
Q 047325 227 HGKGTKHSLAQTLLKQECAVTALVVSSSRSIVYCGSS------DGLVNFWEREKQ 275 (368)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~------dg~i~i~d~~~~ 275 (368)
.. .+... ....+..++|+|+|++|+++.. |+.++||+....
T Consensus 135 ~~------~i~~~--~~~~~t~~~WsPdGr~~~ta~t~~r~~~dng~~Iw~~~G~ 181 (194)
T PF08662_consen 135 KK------KISTF--EHSDATDVEWSPDGRYLATATTSPRLRVDNGFKIWSFQGR 181 (194)
T ss_pred CE------Eeecc--ccCcEEEEEEcCCCCEEEEEEeccceeccccEEEEEecCe
Confidence 41 22222 2334789999999999999874 677899998644
No 238
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=99.53 E-value=7.3e-14 Score=129.97 Aligned_cols=197 Identities=19% Similarity=0.294 Sum_probs=149.8
Q ss_pred cCCCCCeeEEEEe--CCEEEEEeCCCeEEEEeecCCCccccccCCccccceeeeeccCCCCceeEecccceeeeeecCCC
Q 047325 79 KASSGLVKAIVIS--GEKIFTGHQDGKIRVWKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDA 156 (368)
Q Consensus 79 ~~~~~~v~~~~~~--~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (368)
+.+-..|.++.-. .-+.+||+.||.+++|....++.....+.. -...
T Consensus 2205 k~~v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~-------------------------------g~s~ 2253 (2439)
T KOG1064|consen 2205 KHPVENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTA-------------------------------GNSR 2253 (2439)
T ss_pred ecccCceeeecCCCCCceEEecCCCceEEEEeccCCCeEEEeecc-------------------------------Ccch
Confidence 3334444444433 458899999999999999888765554432 2377
Q ss_pred EeEEEEcCCCCEEEEEeCCCcEEEEEccCCeEEEEeecCCCceEEEEeCCCCeEEEEc---CCCeEEEEEcCCCCCCccc
Q 047325 157 VSCMSLDQDCGLLYTASWDRTFKVWRISDSKCLESVSAHDDAVNSVVSSSEGLIFTGS---ADGTVKVWKREQHGKGTKH 233 (368)
Q Consensus 157 v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~---~dg~i~i~d~~~~~~~~~~ 233 (368)
|+.+.|+.+|+.+..+..||.+.+|... .++....+.|+.....+.|.. ..+++++ .++.+.+||...... .
T Consensus 2254 vtr~~f~~qGnk~~i~d~dg~l~l~q~~-pk~~~s~qchnk~~~Df~Fi~-s~~~tag~s~d~~n~~lwDtl~~~~---~ 2328 (2439)
T KOG1064|consen 2254 VTRSRFNHQGNKFGIVDGDGDLSLWQAS-PKPYTSWQCHNKALSDFRFIG-SLLATAGRSSDNRNVCLWDTLLPPM---N 2328 (2439)
T ss_pred hhhhhhcccCCceeeeccCCceeecccC-CcceeccccCCccccceeeee-hhhhccccCCCCCcccchhcccCcc---c
Confidence 8899999999999999999999999986 677778888998888888876 3444443 478899999865432 1
Q ss_pred ccceeeccccccEEEEEEcCCCCEEEEecCCCcEEEEeCCCccccceeeeccceEEEEEEeCCCEEEEeeCCCeEEEEec
Q 047325 234 SLAQTLLKQECAVTALVVSSSRSIVYCGSSDGLVNFWEREKQLSHGGVLKGHKLAVLCLAAAGKLVFSGSADKTICVWRR 313 (368)
Q Consensus 234 ~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~ 313 (368)
..+. ..|.+.++++++.|..+.|++|+.+|.|++||++..+... .++. +. ...++++|+..|.++||++
T Consensus 2329 s~v~--~~H~~gaT~l~~~P~~qllisggr~G~v~l~D~rqrql~h-~~~~-------~~-~~~~f~~~ss~g~ikIw~~ 2397 (2439)
T KOG1064|consen 2329 SLVH--TCHDGGATVLAYAPKHQLLISGGRKGEVCLFDIRQRQLRH-TFQA-------LD-TREYFVTGSSEGNIKIWRL 2397 (2439)
T ss_pred ceee--eecCCCceEEEEcCcceEEEecCCcCcEEEeehHHHHHHH-Hhhh-------hh-hhheeeccCcccceEEEEc
Confidence 2222 6799999999999999999999999999999999765442 2221 33 5679999999999999998
Q ss_pred CCCceeeeEee
Q 047325 314 DGAIHTCLSVL 324 (368)
Q Consensus 314 ~~~~~~~~~~~ 324 (368)
... ..+..+
T Consensus 2398 s~~--~ll~~~ 2406 (2439)
T KOG1064|consen 2398 SEF--GLLHTF 2406 (2439)
T ss_pred ccc--chhhcC
Confidence 765 444444
No 239
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.52 E-value=6.3e-12 Score=109.49 Aligned_cols=183 Identities=15% Similarity=0.102 Sum_probs=119.7
Q ss_pred cCCCEeEEEEcCCCCEEEEEeCC---CcEEEEEccCCeEEEEeecCCCceEEEEeCCCC-eEE-EEcCCC--eEEEEEcC
Q 047325 153 HSDAVSCMSLDQDCGLLYTASWD---RTFKVWRISDSKCLESVSAHDDAVNSVVSSSEG-LIF-TGSADG--TVKVWKRE 225 (368)
Q Consensus 153 ~~~~v~~~~~~~~~~~l~~~~~d---~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~-~~~~dg--~i~i~d~~ 225 (368)
+...+....|+|++++|+.+..+ ..|++||+.+++... +..+...+.+++|+|++ .|+ +.+.++ .|++||+.
T Consensus 188 ~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~-~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~i~~~d~~ 266 (417)
T TIGR02800 188 SREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREK-VASFPGMNGAPAFSPDGSKLAVSLSKDGNPDIYVMDLD 266 (417)
T ss_pred CCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEE-eecCCCCccceEECCCCCEEEEEECCCCCccEEEEECC
Confidence 55568888999999999887654 479999998876543 33345566778999999 454 445444 58888887
Q ss_pred CCCCCcccccceeeccccccEEEEEEcCCCCEEEEecC-CC--cEEEEeCCCccccceeeeccceEEEEEEeCCCEEEEe
Q 047325 226 QHGKGTKHSLAQTLLKQECAVTALVVSSSRSIVYCGSS-DG--LVNFWEREKQLSHGGVLKGHKLAVLCLAAAGKLVFSG 302 (368)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-dg--~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 302 (368)
... ...+..+........|+|+++.|+..+. ++ .|+++|+.++........+.......++|++++|+.+
T Consensus 267 ~~~-------~~~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~~~l~~~~~~~~~~~~spdg~~i~~~ 339 (417)
T TIGR02800 267 GKQ-------LTRLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEVRRLTFRGGYNASPSWSPDGDLIAFV 339 (417)
T ss_pred CCC-------EEECCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeecCCCCccCeEECCCCCEEEEE
Confidence 542 2223333334456789999998876554 33 5778887765432222222333345788999999888
Q ss_pred eCCC---eEEEEecCCCceeeeEeeeccccCeeEEEEecCCeeeecCC
Q 047325 303 SADK---TICVWRRDGAIHTCLSVLTGHTGPVKCLAVEEDRDSSSSTS 347 (368)
Q Consensus 303 ~~dg---~i~iw~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~ 347 (368)
+.++ .|.+||+.+..... +... .......|+|++..++...
T Consensus 340 ~~~~~~~~i~~~d~~~~~~~~---l~~~-~~~~~p~~spdg~~l~~~~ 383 (417)
T TIGR02800 340 HREGGGFNIAVMDLDGGGERV---LTDT-GLDESPSFAPNGRMILYAT 383 (417)
T ss_pred EccCCceEEEEEeCCCCCeEE---ccCC-CCCCCceECCCCCEEEEEE
Confidence 8775 78888887653222 2211 2244568999998776553
No 240
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=99.52 E-value=3.5e-12 Score=109.11 Aligned_cols=269 Identities=12% Similarity=0.100 Sum_probs=184.9
Q ss_pred CCcEEEEEecCC--EEEEccCCCcEEEEcCCcc-----------------eecccCCCCCeeEEEEe--CCEEEEEeCCC
Q 047325 44 EGHIYSLAASKD--LLYTGSDSKNIRVWKNLKE-----------------FCGFKASSGLVKAIVIS--GEKIFTGHQDG 102 (368)
Q Consensus 44 ~~~i~~~~~~~~--~l~s~~~dg~i~iw~~~~~-----------------~~~~~~~~~~v~~~~~~--~~~l~s~~~dg 102 (368)
.....|++|+.+ ++|+|+.||.+++-.+.+. -+++.+|.+.|.-+.|+ .+.|-+...+|
T Consensus 14 nvkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKLTtSDt~G 93 (1189)
T KOG2041|consen 14 NVKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQKLTTSDTSG 93 (1189)
T ss_pred CceEEEEEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccccccccCCCc
Confidence 456789999855 9999999999999975421 23578999999999999 66788999999
Q ss_pred eEEEEeecCCCccccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcCCCCEEEEEeCCCcEEEEE
Q 047325 103 KIRVWKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCGLLYTASWDRTFKVWR 182 (368)
Q Consensus 103 ~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd 182 (368)
.|.+|-+-.+.-...... ....+.|.+++|+.+|..+.....||.|.+=.
T Consensus 94 lIiVWmlykgsW~EEMiN------------------------------nRnKSvV~SmsWn~dG~kIcIvYeDGavIVGs 143 (1189)
T KOG2041|consen 94 LIIVWMLYKGSWCEEMIN------------------------------NRNKSVVVSMSWNLDGTKICIVYEDGAVIVGS 143 (1189)
T ss_pred eEEEEeeecccHHHHHhh------------------------------CcCccEEEEEEEcCCCcEEEEEEccCCEEEEe
Confidence 999999877653221111 01567789999999999999999999998877
Q ss_pred ccCCeEEEEeecCCCceEEEEeCCCC-eEEEEcCCCeEEEEEcCCCCCC-cccccce----eeccccccEEEEEEc----
Q 047325 183 ISDSKCLESVSAHDDAVNSVVSSSEG-LIFTGSADGTVKVWKREQHGKG-TKHSLAQ----TLLKQECAVTALVVS---- 252 (368)
Q Consensus 183 ~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~-~~~~~~~----~~~~~~~~i~~~~~~---- 252 (368)
+...+ +.--.-.......+.|++|. .++.+-.+|.+.++|.+..-.. ....+.. .+......|..+.|.
T Consensus 144 vdGNR-IwgKeLkg~~l~hv~ws~D~~~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~ 222 (1189)
T KOG2041|consen 144 VDGNR-IWGKELKGQLLAHVLWSEDLEQALFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPY 222 (1189)
T ss_pred eccce-ecchhcchheccceeecccHHHHHhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCcc
Confidence 65432 22111112234577899998 7777788999999997643110 0000100 111122235555553
Q ss_pred ----CCCCEEEEecCCCcEEEEeCCCccccceeeeccceEEEEEEeCCCEEEEeeCC---------CeEEEEecCCCcee
Q 047325 253 ----SSRSIVYCGSSDGLVNFWEREKQLSHGGVLKGHKLAVLCLAAAGKLVFSGSAD---------KTICVWRRDGAIHT 319 (368)
Q Consensus 253 ----~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d---------g~i~iw~~~~~~~~ 319 (368)
|+...|+.+..+|.+.+..-++...+.....+-...-..++++|..|++++.| +.|++| ++-+.
T Consensus 223 ~~v~pdrP~lavcy~nGr~QiMR~eND~~Pvv~dtgm~~vgakWnh~G~vLAvcG~~~da~~~~d~n~v~Fy---sp~G~ 299 (1189)
T KOG2041|consen 223 QPVPPDRPRLAVCYANGRMQIMRSENDPEPVVVDTGMKIVGAKWNHNGAVLAVCGNDSDADEPTDSNKVHFY---SPYGH 299 (1189)
T ss_pred ccCCCCCCEEEEEEcCceehhhhhcCCCCCeEEecccEeecceecCCCcEEEEccCcccccCccccceEEEe---ccchh
Confidence 47789999999999988766655555434444333335566789999988764 356666 33346
Q ss_pred eeEeeeccccCeeEEEEecCCeeeecC
Q 047325 320 CLSVLTGHTGPVKCLAVEEDRDSSSST 346 (368)
Q Consensus 320 ~~~~~~~h~~~v~~l~~~~~~~~~~~~ 346 (368)
.+.+++.....|++++|-..|..+|-+
T Consensus 300 i~gtlkvpg~~It~lsWEg~gLriA~A 326 (1189)
T KOG2041|consen 300 IVGTLKVPGSCITGLSWEGTGLRIAIA 326 (1189)
T ss_pred heEEEecCCceeeeeEEcCCceEEEEE
Confidence 677888888889999999988876644
No 241
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.50 E-value=9.9e-12 Score=108.26 Aligned_cols=209 Identities=11% Similarity=0.046 Sum_probs=131.4
Q ss_pred CcEEEEcCC-cceecccCCCCCeeEEEEe--CCEEEEEeCC---CeEEEEeecCCCccccccCCccccceeeeeccCCCC
Q 047325 64 KNIRVWKNL-KEFCGFKASSGLVKAIVIS--GEKIFTGHQD---GKIRVWKISPKNQSVHKRAGTLPTLKDIFKSSIKPS 137 (368)
Q Consensus 64 g~i~iw~~~-~~~~~~~~~~~~v~~~~~~--~~~l~s~~~d---g~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (368)
..|.++|.. .....+..+...+....|+ |++|+.+..+ ..|.+||+.+++.....
T Consensus 170 ~~l~~~d~~g~~~~~l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~~~------------------- 230 (417)
T TIGR02800 170 YELQVADYDGANPQTITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREKVA------------------- 230 (417)
T ss_pred ceEEEEcCCCCCCEEeecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEEee-------------------
Confidence 357777775 3344455566677777887 7788776644 47999999876432111
Q ss_pred ceeEecccceeeeeecCCCEeEEEEcCCCCEEEE-EeCCC--cEEEEEccCCeEEEEeecCCCceEEEEeCCCC-eEEEE
Q 047325 138 NYIEVRRHRTALWIRHSDAVSCMSLDQDCGLLYT-ASWDR--TFKVWRISDSKCLESVSAHDDAVNSVVSSSEG-LIFTG 213 (368)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~~~d~--~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~ 213 (368)
.+...+.+.+|+|+++.|+. .+.++ .|.+||+.+++... +..+........|+|++ .|+..
T Consensus 231 --------------~~~~~~~~~~~spDg~~l~~~~~~~~~~~i~~~d~~~~~~~~-l~~~~~~~~~~~~s~dg~~l~~~ 295 (417)
T TIGR02800 231 --------------SFPGMNGAPAFSPDGSKLAVSLSKDGNPDIYVMDLDGKQLTR-LTNGPGIDTEPSWSPDGKSIAFT 295 (417)
T ss_pred --------------cCCCCccceEECCCCCEEEEEECCCCCccEEEEECCCCCEEE-CCCCCCCCCCEEECCCCCEEEEE
Confidence 13345567899999987764 44444 58899998775433 33344445567899998 55544
Q ss_pred cC-CC--eEEEEEcCCCCCCcccccceeeccccccEEEEEEcCCCCEEEEecCCC---cEEEEeCCCccccceeeeccce
Q 047325 214 SA-DG--TVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSSSRSIVYCGSSDG---LVNFWEREKQLSHGGVLKGHKL 287 (368)
Q Consensus 214 ~~-dg--~i~i~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg---~i~i~d~~~~~~~~~~~~~~~~ 287 (368)
+. ++ .|+++|+.... ...+..+........|+|++++++.++.++ .|.+||+.++.... .......
T Consensus 296 s~~~g~~~iy~~d~~~~~-------~~~l~~~~~~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~~~~~-l~~~~~~ 367 (417)
T TIGR02800 296 SDRGGSPQIYMMDADGGE-------VRRLTFRGGYNASPSWSPDGDLIAFVHREGGGFNIAVMDLDGGGERV-LTDTGLD 367 (417)
T ss_pred ECCCCCceEEEEECCCCC-------EEEeecCCCCccCeEECCCCCEEEEEEccCCceEEEEEeCCCCCeEE-ccCCCCC
Confidence 43 33 57777776431 222333445567789999999999888776 78899987643321 1111112
Q ss_pred EEEEEEeCCCEEEEeeCCC---eEEEEecC
Q 047325 288 AVLCLAAAGKLVFSGSADK---TICVWRRD 314 (368)
Q Consensus 288 ~~~~~~~~~~~l~~~~~dg---~i~iw~~~ 314 (368)
.-..++|+++.|+..+.++ .+++.+.+
T Consensus 368 ~~p~~spdg~~l~~~~~~~~~~~l~~~~~~ 397 (417)
T TIGR02800 368 ESPSFAPNGRMILYATTRGGRGVLGLVSTD 397 (417)
T ss_pred CCceECCCCCEEEEEEeCCCcEEEEEEECC
Confidence 2247889999888776654 34444433
No 242
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.49 E-value=2.1e-11 Score=106.27 Aligned_cols=183 Identities=12% Similarity=0.058 Sum_probs=118.2
Q ss_pred cCCCEeEEEEcCCCCEEEEEeCC---CcEEEEEccCCeEEEEeecCCCceEEEEeCCCC-eEE-EEcCCC--eEEEEEcC
Q 047325 153 HSDAVSCMSLDQDCGLLYTASWD---RTFKVWRISDSKCLESVSAHDDAVNSVVSSSEG-LIF-TGSADG--TVKVWKRE 225 (368)
Q Consensus 153 ~~~~v~~~~~~~~~~~l~~~~~d---~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~-~~~~dg--~i~i~d~~ 225 (368)
+...+....|+|||+.|+..+.+ ..|.+||+.+++... +....+.+....|+|+| .|+ +...+| .|+++|+.
T Consensus 197 ~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~-l~~~~g~~~~~~~SpDG~~la~~~~~~g~~~Iy~~d~~ 275 (430)
T PRK00178 197 SREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQ-ITNFEGLNGAPAWSPDGSKLAFVLSKDGNPEIYVMDLA 275 (430)
T ss_pred CCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEE-ccCCCCCcCCeEECCCCCEEEEEEccCCCceEEEEECC
Confidence 56678899999999988776643 368999998886543 33333445578999999 554 455555 68888887
Q ss_pred CCCCCcccccceeeccccccEEEEEEcCCCCEEEEecC-CC--cEEEEeCCCccccceeeeccceEEEEEEeCCCEEEEe
Q 047325 226 QHGKGTKHSLAQTLLKQECAVTALVVSSSRSIVYCGSS-DG--LVNFWEREKQLSHGGVLKGHKLAVLCLAAAGKLVFSG 302 (368)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-dg--~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 302 (368)
... ...+..+........|+|+++.|+..+. +| .|+++|+.++........+.......++|+++.|+..
T Consensus 276 ~~~-------~~~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~~lt~~~~~~~~~~~Spdg~~i~~~ 348 (430)
T PRK00178 276 SRQ-------LSRVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAERVTFVGNYNARPRLSADGKTLVMV 348 (430)
T ss_pred CCC-------eEEcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeecCCCCccceEECCCCCEEEEE
Confidence 642 2223334444566789999998776553 33 5777787765433222223333346788999988876
Q ss_pred eCC-C--eEEEEecCCCceeeeEeeeccccCeeEEEEecCCeeeecCC
Q 047325 303 SAD-K--TICVWRRDGAIHTCLSVLTGHTGPVKCLAVEEDRDSSSSTS 347 (368)
Q Consensus 303 ~~d-g--~i~iw~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~ 347 (368)
+.+ + .|.++|+.++....+.. ........|+|||+.++.+.
T Consensus 349 ~~~~~~~~l~~~dl~tg~~~~lt~----~~~~~~p~~spdg~~i~~~~ 392 (430)
T PRK00178 349 HRQDGNFHVAAQDLQRGSVRILTD----TSLDESPSVAPNGTMLIYAT 392 (430)
T ss_pred EccCCceEEEEEECCCCCEEEccC----CCCCCCceECCCCCEEEEEE
Confidence 643 3 47888887764333321 12223568999999877654
No 243
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.49 E-value=2.3e-12 Score=100.63 Aligned_cols=252 Identities=13% Similarity=0.203 Sum_probs=152.5
Q ss_pred CCCCeeEEEEe--CCEEEEEeCCCeEEEEeecCCCccccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEe
Q 047325 81 SSGLVKAIVIS--GEKIFTGHQDGKIRVWKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVS 158 (368)
Q Consensus 81 ~~~~v~~~~~~--~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 158 (368)
...-|.++.|+ |++|++|..+|.|.++.-+....-........ ......-.++ .-..-...|.
T Consensus 24 eadiis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~f-------qshepEFDYL--------kSleieEKin 88 (433)
T KOG1354|consen 24 EADIISAVEFDHYGERLATGDKGGRVVLFEREKLYKGEYNFQTEF-------QSHEPEFDYL--------KSLEIEEKIN 88 (433)
T ss_pred hhcceeeEEeecccceEeecCCCCeEEEeecccccccceeeeeee-------eccCcccchh--------hhhhhhhhhh
Confidence 34568889988 99999999999999997554332000000000 0000000000 0001345788
Q ss_pred EEEEcCCC--CEEEEEeCCCcEEEEEccCCeE-----------------------------------EEEe-ecCCCceE
Q 047325 159 CMSLDQDC--GLLYTASWDRTFKVWRISDSKC-----------------------------------LESV-SAHDDAVN 200 (368)
Q Consensus 159 ~~~~~~~~--~~l~~~~~d~~i~iwd~~~~~~-----------------------------------~~~~-~~~~~~v~ 200 (368)
.+.|.+++ ..++..+.|.+|++|.+..... .+.+ .+|.-.|+
T Consensus 89 kIrw~~~~n~a~FLlstNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiN 168 (433)
T KOG1354|consen 89 KIRWLDDGNLAEFLLSTNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHIN 168 (433)
T ss_pred hceecCCCCccEEEEecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEee
Confidence 89998865 4677788899999998753211 0011 25777899
Q ss_pred EEEeCCCCeEEEEcCCCeEEEEEcCCCCCCcccccc--eeeccccccEEEEEEcC-CCCEEEEecCCCcEEEEeCCCccc
Q 047325 201 SVVSSSEGLIFTGSADGTVKVWKREQHGKGTKHSLA--QTLLKQECAVTALVVSS-SRSIVYCGSSDGLVNFWEREKQLS 277 (368)
Q Consensus 201 ~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~--~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~ 277 (368)
++.++.|...+..+.|-.|.+|++..........-+ ........-|++..|+| ..+.++-.++.|+|++-|++....
T Consensus 169 SIS~NsD~Et~lSADdLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aL 248 (433)
T KOG1354|consen 169 SISVNSDKETFLSADDLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSAL 248 (433)
T ss_pred eeeecCccceEeeccceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhh
Confidence 999999995555677889999999765431111100 11122345688999999 457888899999999999984322
Q ss_pred cce---ee--e----------ccceEE--EEEEeCCCEEEEeeCCCeEEEEecCCCceeeeEeeecccc-----------
Q 047325 278 HGG---VL--K----------GHKLAV--LCLAAAGKLVFSGSADKTICVWRRDGAIHTCLSVLTGHTG----------- 329 (368)
Q Consensus 278 ~~~---~~--~----------~~~~~~--~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~----------- 329 (368)
.-. .+ . .--..| ..|+.+|+|+++-+. -+|++||+.... +++.++.-|..
T Consensus 249 Cd~hsKlfEepedp~~rsffseiIsSISDvKFs~sGryilsRDy-ltvk~wD~nme~-~pv~t~~vh~~lr~kLc~lYEn 326 (433)
T KOG1354|consen 249 CDAHSKLFEEPEDPSSRSFFSEIISSISDVKFSHSGRYILSRDY-LTVKLWDLNMEA-KPVETYPVHEYLRSKLCSLYEN 326 (433)
T ss_pred hcchhhhhccccCCcchhhHHHHhhhhhceEEccCCcEEEEecc-ceeEEEeccccC-CcceEEeehHhHHHHHHHHhhc
Confidence 110 00 0 001112 456678999987543 589999985432 45555555532
Q ss_pred -Ce---eEEEEecCCeeeecCCcc
Q 047325 330 -PV---KCLAVEEDRDSSSSTSSC 349 (368)
Q Consensus 330 -~v---~~l~~~~~~~~~~~~~~~ 349 (368)
.| ..++|+.++..+++++-.
T Consensus 327 D~IfdKFec~~sg~~~~v~TGsy~ 350 (433)
T KOG1354|consen 327 DAIFDKFECSWSGNDSYVMTGSYN 350 (433)
T ss_pred cchhheeEEEEcCCcceEeccccc
Confidence 22 357888888855555433
No 244
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.48 E-value=1e-11 Score=95.98 Aligned_cols=268 Identities=16% Similarity=0.238 Sum_probs=169.7
Q ss_pred CCcEEEEEec--CCEEEEccCCCcEEEEcCCcc-------eecccCCCC------------CeeEEEEe----CCEEEEE
Q 047325 44 EGHIYSLAAS--KDLLYTGSDSKNIRVWKNLKE-------FCGFKASSG------------LVKAIVIS----GEKIFTG 98 (368)
Q Consensus 44 ~~~i~~~~~~--~~~l~s~~~dg~i~iw~~~~~-------~~~~~~~~~------------~v~~~~~~----~~~l~s~ 98 (368)
.+.|+++.|+ |.+|++|...|.|.++.-... ...+++|.. .|..+.|. ...++..
T Consensus 26 ad~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLls 105 (460)
T COG5170 26 ADKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLLS 105 (460)
T ss_pred cceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEEe
Confidence 5669999997 569999999999999975422 234555543 47777775 2356667
Q ss_pred eCCCeEEEEeecCCCccccccCCcc-----------ccceeeeeccCCCCceeEecccceeee-eecCCCEeEEEEcCCC
Q 047325 99 HQDGKIRVWKISPKNQSVHKRAGTL-----------PTLKDIFKSSIKPSNYIEVRRHRTALW-IRHSDAVSCMSLDQDC 166 (368)
Q Consensus 99 ~~dg~i~vw~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~ 166 (368)
+.|.+|++|.+.............. .....+..... ......+...+.+++ ..|.--|.++.++.|.
T Consensus 106 tNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprl-s~hd~iiaa~p~rvyaNaH~yhiNSiS~NsD~ 184 (460)
T COG5170 106 TNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRL-SEHDEIIAAKPCRVYANAHPYHINSISFNSDK 184 (460)
T ss_pred cCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccc-cccceEEEeccceeccccceeEeeeeeecCch
Confidence 7899999999876643322211100 00000000000 011111112222333 5588889999999998
Q ss_pred CEEEEEeCCCcEEEEEccCCe---EEEEeecCC-----CceEEEEeCCCC--eEEEEcCCCeEEEEEcCCCCCCcccccc
Q 047325 167 GLLYTASWDRTFKVWRISDSK---CLESVSAHD-----DAVNSVVSSSEG--LIFTGSADGTVKVWKREQHGKGTKHSLA 236 (368)
Q Consensus 167 ~~l~~~~~d~~i~iwd~~~~~---~~~~~~~~~-----~~v~~~~~~~~~--~l~~~~~dg~i~i~d~~~~~~~~~~~~~ 236 (368)
..++++. |=.|.+|++.-.. .+..++.|. .-|++..|+|.. .+.-.+..|.|++-|+|+..........
T Consensus 185 et~lSaD-dLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~alcdn~~kl 263 (460)
T COG5170 185 ETLLSAD-DLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSALCDNSKKL 263 (460)
T ss_pred heeeecc-ceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhhhhhccCchhh
Confidence 8888775 5789999986432 233344443 457888999987 6777788999999999965331111111
Q ss_pred ----------eeeccccccEEEEEEcCCCCEEEEecCCCcEEEEeCCCccccceeeeccc------------eE-----E
Q 047325 237 ----------QTLLKQECAVTALVVSSSRSIVYCGSSDGLVNFWEREKQLSHGGVLKGHK------------LA-----V 289 (368)
Q Consensus 237 ----------~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~------------~~-----~ 289 (368)
.-+.+-...|..+.|+++|+++++-+. -+|++||.+..+.+.....-|. .. -
T Consensus 264 fe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdy-ltvkiwDvnm~k~pikTi~~h~~l~~~l~d~YEnDaifdkFe 342 (460)
T COG5170 264 FELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDY-LTVKIWDVNMAKNPIKTIPMHCDLMDELNDVYENDAIFDKFE 342 (460)
T ss_pred hhhccCcccchhHHHHhhhhcceEEcCCCcEEEEecc-ceEEEEecccccCCceeechHHHHHHHHHhhhhccceeeeEE
Confidence 111223357888999999999988755 5799999987665555543331 11 2
Q ss_pred EEEEeCCCEEEEeeCCCeEEEEecC
Q 047325 290 LCLAAAGKLVFSGSADKTICVWRRD 314 (368)
Q Consensus 290 ~~~~~~~~~l~~~~~dg~i~iw~~~ 314 (368)
..++-|.+.+.+|+..+..-+|-.+
T Consensus 343 isfSgd~~~v~sgsy~NNfgiyp~~ 367 (460)
T COG5170 343 ISFSGDDKHVLSGSYSNNFGIYPTD 367 (460)
T ss_pred EEecCCcccccccccccceeeeccc
Confidence 4455677888899988888888643
No 245
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.47 E-value=2.9e-11 Score=105.11 Aligned_cols=183 Identities=11% Similarity=0.035 Sum_probs=112.5
Q ss_pred cCCCEeEEEEcCCCCEEEEEeCC---CcEEEEEccCCeEEEEeecCCCceEEEEeCCCC-eEE-EEcCCCe--EEEEEcC
Q 047325 153 HSDAVSCMSLDQDCGLLYTASWD---RTFKVWRISDSKCLESVSAHDDAVNSVVSSSEG-LIF-TGSADGT--VKVWKRE 225 (368)
Q Consensus 153 ~~~~v~~~~~~~~~~~l~~~~~d---~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~-~~~~dg~--i~i~d~~ 225 (368)
+...+.+..|+|||+.|+..+.+ ..|.++|+.+++... +....+......|+|+| .|+ +...++. |+++|+.
T Consensus 216 ~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~-lt~~~g~~~~~~wSPDG~~La~~~~~~g~~~Iy~~dl~ 294 (448)
T PRK04792 216 SPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREK-VTSFPGINGAPRFSPDGKKLALVLSKDGQPEIYVVDIA 294 (448)
T ss_pred CCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEE-ecCCCCCcCCeeECCCCCEEEEEEeCCCCeEEEEEECC
Confidence 55678889999999988776543 258899998876533 22223334567999999 454 4556664 7777876
Q ss_pred CCCCCcccccceeeccccccEEEEEEcCCCCEEEEecC-CC--cEEEEeCCCccccceeeeccceEEEEEEeCCCEEEEe
Q 047325 226 QHGKGTKHSLAQTLLKQECAVTALVVSSSRSIVYCGSS-DG--LVNFWEREKQLSHGGVLKGHKLAVLCLAAAGKLVFSG 302 (368)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-dg--~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 302 (368)
.+. ...+..+.......+|+||++.|+..+. ++ .|+++|+.++........++.....+++|||++|+..
T Consensus 295 tg~-------~~~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~Lt~~g~~~~~~~~SpDG~~l~~~ 367 (448)
T PRK04792 295 TKA-------LTRITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVSRLTFEGEQNLGGSITPDGRSMIMV 367 (448)
T ss_pred CCC-------eEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEEecCCCCCcCeeECCCCCEEEEE
Confidence 542 2233334445667899999998876553 33 4666777665433222233333335789999988776
Q ss_pred eC-CCe--EEEEecCCCceeeeEeeeccccCeeEEEEecCCeeeecCC
Q 047325 303 SA-DKT--ICVWRRDGAIHTCLSVLTGHTGPVKCLAVEEDRDSSSSTS 347 (368)
Q Consensus 303 ~~-dg~--i~iw~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~ 347 (368)
+. ++. |.++|++++.... +... .......|+|+|+.++...
T Consensus 368 ~~~~g~~~I~~~dl~~g~~~~---lt~~-~~d~~ps~spdG~~I~~~~ 411 (448)
T PRK04792 368 NRTNGKFNIARQDLETGAMQV---LTST-RLDESPSVAPNGTMVIYST 411 (448)
T ss_pred EecCCceEEEEEECCCCCeEE---ccCC-CCCCCceECCCCCEEEEEE
Confidence 54 444 4455665553222 2211 1223458999999876543
No 246
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.47 E-value=1.2e-11 Score=96.20 Aligned_cols=188 Identities=13% Similarity=0.171 Sum_probs=129.6
Q ss_pred CeeEEEEeCCEEEEEeCCCeEEEEeecCCCccccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEc
Q 047325 84 LVKAIVISGEKIFTGHQDGKIRVWKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLD 163 (368)
Q Consensus 84 ~v~~~~~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 163 (368)
+..++..+|+++++++.- .+.|-|.++-+....+. .-+.|..+.|.
T Consensus 12 ~~c~fSp~g~yiAs~~~y-rlviRd~~tlq~~qlf~---------------------------------cldki~yieW~ 57 (447)
T KOG4497|consen 12 PFCSFSPCGNYIASLSRY-RLVIRDSETLQLHQLFL---------------------------------CLDKIVYIEWK 57 (447)
T ss_pred CceeECCCCCeeeeeeee-EEEEeccchhhHHHHHH---------------------------------HHHHhhheeee
Confidence 344555569999999866 77777777665332221 23456778888
Q ss_pred CCCCEEEEE-eCCCcEEEEEccCCeEEEEeecCCCceEEEEeCCCC--eEEEEcCCCeEEEEEcCCCCCCcccccceeec
Q 047325 164 QDCGLLYTA-SWDRTFKVWRISDSKCLESVSAHDDAVNSVVSSSEG--LIFTGSADGTVKVWKREQHGKGTKHSLAQTLL 240 (368)
Q Consensus 164 ~~~~~l~~~-~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~--~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~ 240 (368)
.+.-+++++ ..++.|.+|++...+-...+.....++.+++|+|+| .|.+...+-.|.+|.+.+.. ...+.
T Consensus 58 ads~~ilC~~yk~~~vqvwsl~Qpew~ckIdeg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~-------~~~~~ 130 (447)
T KOG4497|consen 58 ADSCHILCVAYKDPKVQVWSLVQPEWYCKIDEGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQK-------GYLLP 130 (447)
T ss_pred ccceeeeeeeeccceEEEEEeecceeEEEeccCCCcceeeeECCCcceEeeeecceeEEEEEEeccce-------eEEec
Confidence 877665554 678899999999998888888888999999999999 67777789999999998652 22333
Q ss_pred cccccEEEEEEcCCCCEEEEecCC------------------------------------CcEEEEeCCCccccceeeec
Q 047325 241 KQECAVTALVVSSSRSIVYCGSSD------------------------------------GLVNFWEREKQLSHGGVLKG 284 (368)
Q Consensus 241 ~~~~~i~~~~~~~~~~~l~~~~~d------------------------------------g~i~i~d~~~~~~~~~~~~~ 284 (368)
-.+..+..++|+|+|++.+..+.- ..+.+||.--.........+
T Consensus 131 ~pK~~~kg~~f~~dg~f~ai~sRrDCkdyv~i~~c~~W~ll~~f~~dT~DltgieWsPdg~~laVwd~~Leykv~aYe~~ 210 (447)
T KOG4497|consen 131 HPKTNVKGYAFHPDGQFCAILSRRDCKDYVQISSCKAWILLKEFKLDTIDLTGIEWSPDGNWLAVWDNVLEYKVYAYERG 210 (447)
T ss_pred ccccCceeEEECCCCceeeeeecccHHHHHHHHhhHHHHHHHhcCCCcccccCceECCCCcEEEEecchhhheeeeeeec
Confidence 334456778888888877766431 22444543211111111122
Q ss_pred cceEEEEEEeCCCEEEEeeCCCeEEEEe
Q 047325 285 HKLAVLCLAAAGKLVFSGSADKTICVWR 312 (368)
Q Consensus 285 ~~~~~~~~~~~~~~l~~~~~dg~i~iw~ 312 (368)
-......++|.+++|++|+.|+.+||-+
T Consensus 211 lG~k~v~wsP~~qflavGsyD~~lrvln 238 (447)
T KOG4497|consen 211 LGLKFVEWSPCNQFLAVGSYDQMLRVLN 238 (447)
T ss_pred cceeEEEeccccceEEeeccchhhhhhc
Confidence 2334467788999999999999998865
No 247
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.46 E-value=3.8e-12 Score=112.99 Aligned_cols=191 Identities=15% Similarity=0.174 Sum_probs=143.1
Q ss_pred EEEeCCEEEEEeCCCeEEEEeecCCCccccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcCCCC
Q 047325 88 IVISGEKIFTGHQDGKIRVWKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCG 167 (368)
Q Consensus 88 ~~~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 167 (368)
+.+....++.++.+..+-+||................. -....-+.++++.-
T Consensus 95 l~~e~k~i~l~~~~ns~~i~d~~~~~~~~~i~~~er~~----------------------------l~~~~~~g~s~~~~ 146 (967)
T KOG0974|consen 95 LFEENKKIALVTSRNSLLIRDSKNSSVLSKIQSDERCT----------------------------LYSSLIIGDSAEEL 146 (967)
T ss_pred hhhhcceEEEEEcCceEEEEecccCceehhcCCCceEE----------------------------EEeEEEEeccCcEE
Confidence 33447789999999999999998776544433221100 01112233455666
Q ss_pred EEEEEeCCCcEEEEEccCCeEEEEeecCCCceEEEEeCCCC-eEEEEcCCCeEEEEEcCCCCCCcccccceeeccccccE
Q 047325 168 LLYTASWDRTFKVWRISDSKCLESVSAHDDAVNSVVSSSEG-LIFTGSADGTVKVWKREQHGKGTKHSLAQTLLKQECAV 246 (368)
Q Consensus 168 ~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~i 246 (368)
++++|+.-+.|.+|+....+.-..+.+|++.|.++.++.+| ++++.+.|+++++|++.+... ......+|...+
T Consensus 147 ~i~~gsv~~~iivW~~~~dn~p~~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~-----~~~~~fgHsaRv 221 (967)
T KOG0974|consen 147 YIASGSVFGEIIVWKPHEDNKPIRLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREV-----LGCTGFGHSARV 221 (967)
T ss_pred EEEeccccccEEEEeccccCCcceecccCCceEEEEEccCCcEEEEEecCcceeeeecccccc-----cCccccccccee
Confidence 89999999999999987444444688999999999999999 999999999999999987643 224567899999
Q ss_pred EEEEEcCCCCEEEEecCCCcEEEEeCCCccccceeeeccce---EEEEEEeCCCEEEEeeCCCeEEEEecCC
Q 047325 247 TALVVSSSRSIVYCGSSDGLVNFWEREKQLSHGGVLKGHKL---AVLCLAAAGKLVFSGSADKTICVWRRDG 315 (368)
Q Consensus 247 ~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~---~~~~~~~~~~~l~~~~~dg~i~iw~~~~ 315 (368)
..++|.|+ .++++++|-+.++|+....+.. .+.+|.. .-..+.++...++|++.||.+++|++..
T Consensus 222 w~~~~~~n--~i~t~gedctcrvW~~~~~~l~--~y~~h~g~~iw~~~~~~~~~~~vT~g~Ds~lk~~~l~~ 289 (967)
T KOG0974|consen 222 WACCFLPN--RIITVGEDCTCRVWGVNGTQLE--VYDEHSGKGIWKIAVPIGVIIKVTGGNDSTLKLWDLNG 289 (967)
T ss_pred EEEEeccc--eeEEeccceEEEEEecccceeh--hhhhhhhcceeEEEEcCCceEEEeeccCcchhhhhhhc
Confidence 99999998 8999999999999976543322 4555543 2245556778899999999999998743
No 248
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.46 E-value=2.6e-11 Score=101.43 Aligned_cols=142 Identities=20% Similarity=0.280 Sum_probs=117.3
Q ss_pred CCCEEEEEeCCCcEEEEEccCCeEEEEee--cCCCceEEEEeCCCC-eEEEEcCCCeEEEEEcCCCCCCcccccceeecc
Q 047325 165 DCGLLYTASWDRTFKVWRISDSKCLESVS--AHDDAVNSVVSSSEG-LIFTGSADGTVKVWKREQHGKGTKHSLAQTLLK 241 (368)
Q Consensus 165 ~~~~l~~~~~d~~i~iwd~~~~~~~~~~~--~~~~~v~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~ 241 (368)
+...++-|...|.|.+|++..++....+. .|.+.|.++.++.+- .|.+++.|+.+..|+.... .....+..
T Consensus 69 ~t~~lvlgt~~g~v~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~------~~~~~~~~ 142 (541)
T KOG4547|consen 69 DTSMLVLGTPQGSVLLYSVAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEK------VIIRIWKE 142 (541)
T ss_pred CceEEEeecCCccEEEEEecCCeEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEecccc------eeeeeecc
Confidence 45578888899999999999999888886 588999999988776 9999999999999999765 34566677
Q ss_pred ccccEEEEEEcCCCCEEEEecCCCcEEEEeCCCccccceeeeccceEEEEEEe--C-----CCEEEE-eeCCCeEEEEec
Q 047325 242 QECAVTALVVSSSRSIVYCGSSDGLVNFWEREKQLSHGGVLKGHKLAVLCLAA--A-----GKLVFS-GSADKTICVWRR 313 (368)
Q Consensus 242 ~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~--~-----~~~l~~-~~~dg~i~iw~~ 313 (368)
....+.+++.+||+..+++++ +.|++||+++.+.. ..+.+|..++.++++ + |.++.+ ...+..+.+|-+
T Consensus 143 ~~~~~~sl~is~D~~~l~~as--~~ik~~~~~~kevv-~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v 219 (541)
T KOG4547|consen 143 QKPLVSSLCISPDGKILLTAS--RQIKVLDIETKEVV-ITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVV 219 (541)
T ss_pred CCCccceEEEcCCCCEEEecc--ceEEEEEccCceEE-EEecCCCcceEEEEEEEeccccccceeeeccccccceeEEEE
Confidence 777899999999999999987 68999999997665 788999999988876 2 455554 445667888876
Q ss_pred CC
Q 047325 314 DG 315 (368)
Q Consensus 314 ~~ 315 (368)
+.
T Consensus 220 ~~ 221 (541)
T KOG4547|consen 220 EK 221 (541)
T ss_pred Ec
Confidence 54
No 249
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.46 E-value=1.7e-09 Score=91.17 Aligned_cols=254 Identities=14% Similarity=0.209 Sum_probs=153.8
Q ss_pred CcEEEEcCC--cc-eecc--cCCCCCeeEEEEe--CCEEEEEeC----CCeEEEEeecCCC-ccccccCCccccceeeee
Q 047325 64 KNIRVWKNL--KE-FCGF--KASSGLVKAIVIS--GEKIFTGHQ----DGKIRVWKISPKN-QSVHKRAGTLPTLKDIFK 131 (368)
Q Consensus 64 g~i~iw~~~--~~-~~~~--~~~~~~v~~~~~~--~~~l~s~~~----dg~i~vw~~~~~~-~~~~~~~~~~~~~~~~~~ 131 (368)
+.|.+|++. +. +... .........++++ +++|++... +|.|..|++.... ......
T Consensus 13 ~gI~~~~~d~~~g~l~~~~~~~~~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~------------ 80 (345)
T PF10282_consen 13 GGIYVFRFDEETGTLTLVQTVAEGENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLN------------ 80 (345)
T ss_dssp TEEEEEEEETTTTEEEEEEEEEESSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEE------------
T ss_pred CcEEEEEEcCCCCCceEeeeecCCCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEee------------
Confidence 677777762 21 1111 1123334456664 788888876 5789999988752 111100
Q ss_pred ccCCCCceeEecccceeeeeecCCCEeEEEEcCCCCEEEEEeC-CCcEEEEEccC-CeEEEE---ee----------cCC
Q 047325 132 SSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCGLLYTASW-DRTFKVWRISD-SKCLES---VS----------AHD 196 (368)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d~~i~iwd~~~-~~~~~~---~~----------~~~ 196 (368)
...........++++|++++|+++.. +|.|.++++.. +..... +. ...
T Consensus 81 -----------------~~~~~g~~p~~i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~ 143 (345)
T PF10282_consen 81 -----------------SVPSGGSSPCHIAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEG 143 (345)
T ss_dssp -----------------EEEESSSCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSS
T ss_pred -----------------eeccCCCCcEEEEEecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCccccccc
Confidence 00112345567999999999988874 89999999986 443322 21 112
Q ss_pred CceEEEEeCCCC-eEEE-EcCCCeEEEEEcCCCCCCcccccceeeccccccEEEEEEcCCCCEEEEec-CCCcEEEEeCC
Q 047325 197 DAVNSVVSSSEG-LIFT-GSADGTVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSSSRSIVYCGS-SDGLVNFWERE 273 (368)
Q Consensus 197 ~~v~~~~~~~~~-~l~~-~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~i~i~d~~ 273 (368)
....++.++|++ ++++ .-....|.+|++......... ............+.+.|+|+++++++.. .++.|.++++.
T Consensus 144 ~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~-~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~ 222 (345)
T PF10282_consen 144 PHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDTGKLTP-VDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYD 222 (345)
T ss_dssp TCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS-TEEE-EEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEE
T ss_pred ccceeEEECCCCCEEEEEecCCCEEEEEEEeCCCceEEE-eeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeec
Confidence 456789999998 4444 344568999999765321111 1111224456688999999999876654 56789999887
Q ss_pred --Ccccc-ceee-------ecc-ceEEEEEEeCCCEEEEee-CCCeEEEEecCC--CceeeeEeeeccccCeeEEEEecC
Q 047325 274 --KQLSH-GGVL-------KGH-KLAVLCLAAAGKLVFSGS-ADKTICVWRRDG--AIHTCLSVLTGHTGPVKCLAVEED 339 (368)
Q Consensus 274 --~~~~~-~~~~-------~~~-~~~~~~~~~~~~~l~~~~-~dg~i~iw~~~~--~~~~~~~~~~~h~~~v~~l~~~~~ 339 (368)
++... .... .+. ...-+.++||+++|+++. .++.|.+|+++. +....+..+.......+.++++|+
T Consensus 223 ~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~~G~~Pr~~~~s~~ 302 (345)
T PF10282_consen 223 PSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVPTGGKFPRHFAFSPD 302 (345)
T ss_dssp TTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEEESSSSEEEEEE-TT
T ss_pred ccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEEEeCCCCCccEEEEeCC
Confidence 22111 0111 111 234477899999888765 467899999943 344555555544556899999999
Q ss_pred CeeeecCC
Q 047325 340 RDSSSSTS 347 (368)
Q Consensus 340 ~~~~~~~~ 347 (368)
|++++.++
T Consensus 303 g~~l~Va~ 310 (345)
T PF10282_consen 303 GRYLYVAN 310 (345)
T ss_dssp SSEEEEEE
T ss_pred CCEEEEEe
Confidence 99876553
No 250
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=99.45 E-value=1.2e-10 Score=99.86 Aligned_cols=289 Identities=10% Similarity=0.057 Sum_probs=152.9
Q ss_pred EecCCEEEEccCCCcEEEEcCCccee--cccCCCCCeeEEEEeCCEEEEEeCCCeEEEEeecCCCccccccCCccccce-
Q 047325 51 AASKDLLYTGSDSKNIRVWKNLKEFC--GFKASSGLVKAIVISGEKIFTGHQDGKIRVWKISPKNQSVHKRAGTLPTLK- 127 (368)
Q Consensus 51 ~~~~~~l~s~~~dg~i~iw~~~~~~~--~~~~~~~~v~~~~~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~- 127 (368)
...++.+++++.+|.|..+|..+... .+.............++.++.++.+|.+..+|.++++..............
T Consensus 62 ~v~~~~v~v~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~p~v~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~p 141 (377)
T TIGR03300 62 AVAGGKVYAADADGTVVALDAETGKRLWRVDLDERLSGGVGADGGLVFVGTEKGEVIALDAEDGKELWRAKLSSEVLSPP 141 (377)
T ss_pred EEECCEEEEECCCCeEEEEEccCCcEeeeecCCCCcccceEEcCCEEEEEcCCCEEEEEECCCCcEeeeeccCceeecCC
Confidence 34466777777777777777653322 222222222334455777777777888888887777765554443211100
Q ss_pred ----eeeeccCCCCceeEecccc-eeeeeec-CCCE------eEEEEcCCCCEEEEEeCCCcEEEEEccCCeEEEEeecC
Q 047325 128 ----DIFKSSIKPSNYIEVRRHR-TALWIRH-SDAV------SCMSLDQDCGLLYTASWDRTFKVWRISDSKCLESVSAH 195 (368)
Q Consensus 128 ----~~~~~~~~~~~~~~~~~~~-~~~~~~~-~~~v------~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~ 195 (368)
...........+..+.... ...|... .... .+... .+..++.+..++.+..+|+++|+.+......
T Consensus 142 ~v~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~~--~~~~v~~~~~~g~v~ald~~tG~~~W~~~~~ 219 (377)
T TIGR03300 142 LVANGLVVVRTNDGRLTALDAATGERLWTYSRVTPALTLRGSASPVI--ADGGVLVGFAGGKLVALDLQTGQPLWEQRVA 219 (377)
T ss_pred EEECCEEEEECCCCeEEEEEcCCCceeeEEccCCCceeecCCCCCEE--ECCEEEEECCCCEEEEEEccCCCEeeeeccc
Confidence 0000001111111111100 0111100 0000 00111 1246778888899999999999876543311
Q ss_pred CC----c---eEEEEe---CCCCeEEEEcCCCeEEEEEcCCCCCCcccccceeeccccccEEEEEEcCCCCEEEEecCCC
Q 047325 196 DD----A---VNSVVS---SSEGLIFTGSADGTVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSSSRSIVYCGSSDG 265 (368)
Q Consensus 196 ~~----~---v~~~~~---~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg 265 (368)
.. . ...+.- ..++.+++++.+|.++.+|.+++.... ... . ....... ..+..++.++.+|
T Consensus 220 ~~~g~~~~~~~~~~~~~p~~~~~~vy~~~~~g~l~a~d~~tG~~~W------~~~-~-~~~~~p~--~~~~~vyv~~~~G 289 (377)
T TIGR03300 220 LPKGRTELERLVDVDGDPVVDGGQVYAVSYQGRVAALDLRSGRVLW------KRD-A-SSYQGPA--VDDNRLYVTDADG 289 (377)
T ss_pred cCCCCCchhhhhccCCccEEECCEEEEEEcCCEEEEEECCCCcEEE------eec-c-CCccCce--EeCCEEEEECCCC
Confidence 00 0 001111 124578888889999999998663211 111 1 1111122 2456788888999
Q ss_pred cEEEEeCCCccccceeeeccceEEEEEEeCCCEEEEeeCCCeEEEEecCCCceeeeEeeeccccCeeE-EEEecCCeeee
Q 047325 266 LVNFWEREKQLSHGGVLKGHKLAVLCLAAAGKLVFSGSADKTICVWRRDGAIHTCLSVLTGHTGPVKC-LAVEEDRDSSS 344 (368)
Q Consensus 266 ~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~-l~~~~~~~~~~ 344 (368)
.++.+|..+++.+.................+..|++++.||.|+++|..++ +.+..+..+..++.. ..+.. +.
T Consensus 290 ~l~~~d~~tG~~~W~~~~~~~~~~ssp~i~g~~l~~~~~~G~l~~~d~~tG--~~~~~~~~~~~~~~~sp~~~~-~~--- 363 (377)
T TIGR03300 290 VVVALDRRSGSELWKNDELKYRQLTAPAVVGGYLVVGDFEGYLHWLSREDG--SFVARLKTDGSGIASPPVVVG-DG--- 363 (377)
T ss_pred eEEEEECCCCcEEEccccccCCccccCEEECCEEEEEeCCCEEEEEECCCC--CEEEEEEcCCCccccCCEEEC-CE---
Confidence 999999988765532211111111222235779999999999999988776 666666655544332 23333 33
Q ss_pred cCCcceEEEEEeeCCcccccccC
Q 047325 345 STSSCAQRWIVYSGSLDKSDDDV 367 (368)
Q Consensus 345 ~~~~~~~~w~l~sg~~D~~v~i~ 367 (368)
|+.++.||.|..|
T Consensus 364 ----------l~v~~~dG~l~~~ 376 (377)
T TIGR03300 364 ----------LLVQTRDGDLYAF 376 (377)
T ss_pred ----------EEEEeCCceEEEe
Confidence 5566677776554
No 251
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.44 E-value=6.6e-12 Score=104.61 Aligned_cols=184 Identities=13% Similarity=0.242 Sum_probs=141.5
Q ss_pred EEEEEeCCCeEEEEeecCCCccccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcCCCCEEEEEe
Q 047325 94 KIFTGHQDGKIRVWKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCGLLYTAS 173 (368)
Q Consensus 94 ~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 173 (368)
-|+.++....|.-.+++.+..+..+.. ....++++..++-..+|++|+
T Consensus 147 Dly~~gsg~evYRlNLEqGrfL~P~~~--------------------------------~~~~lN~v~in~~hgLla~Gt 194 (703)
T KOG2321|consen 147 DLYLVGSGSEVYRLNLEQGRFLNPFET--------------------------------DSGELNVVSINEEHGLLACGT 194 (703)
T ss_pred cEEEeecCcceEEEEcccccccccccc--------------------------------ccccceeeeecCccceEEecc
Confidence 344555555777788888875444332 457899999999888999999
Q ss_pred CCCcEEEEEccCCeEEEEeec------CC-----CceEEEEeCCCC-eEEEEcCCCeEEEEEcCCCCCCcccccceeecc
Q 047325 174 WDRTFKVWRISDSKCLESVSA------HD-----DAVNSVVSSSEG-LIFTGSADGTVKVWKREQHGKGTKHSLAQTLLK 241 (368)
Q Consensus 174 ~d~~i~iwd~~~~~~~~~~~~------~~-----~~v~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~ 241 (368)
.+|.|..||.+....+..+.. |. ..|+++.|..+| .+++|+.+|.+.|||++.... ....-.+
T Consensus 195 ~~g~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~p-----l~~kdh~ 269 (703)
T KOG2321|consen 195 EDGVVEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKP-----LLVKDHG 269 (703)
T ss_pred cCceEEEecchhhhhheeeecccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCc-----eeecccC
Confidence 999999999998776665542 22 249999999999 999999999999999997643 4444556
Q ss_pred ccccEEEEEEcCC--CCEEEEecCCCcEEEEeCCCccccceeeeccceEEEEEEeCCCEEEEeeCCCeEEEEecCC
Q 047325 242 QECAVTALVVSSS--RSIVYCGSSDGLVNFWEREKQLSHGGVLKGHKLAVLCLAAAGKLVFSGSADKTICVWRRDG 315 (368)
Q Consensus 242 ~~~~i~~~~~~~~--~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~ 315 (368)
..-+|..+.|.+. ++.+++. ....++|||-.+++.....-..+...-.|+-|++.+++++-.++.+..|-+..
T Consensus 270 ~e~pi~~l~~~~~~~q~~v~S~-Dk~~~kiWd~~~Gk~~asiEpt~~lND~C~~p~sGm~f~Ane~~~m~~yyiP~ 344 (703)
T KOG2321|consen 270 YELPIKKLDWQDTDQQNKVVSM-DKRILKIWDECTGKPMASIEPTSDLNDFCFVPGSGMFFTANESSKMHTYYIPS 344 (703)
T ss_pred CccceeeecccccCCCceEEec-chHHhhhcccccCCceeeccccCCcCceeeecCCceEEEecCCCcceeEEccc
Confidence 6778999999775 4556554 45689999999887775555556666688889999999999999888886643
No 252
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.44 E-value=1.2e-10 Score=101.58 Aligned_cols=230 Identities=10% Similarity=0.020 Sum_probs=138.3
Q ss_pred cEEEEcCCcc-eecccCCCCCeeEEEEe--CCEEEEEeCC---CeEEEEeecCCCccccccCCccccceeeeeccCCCCc
Q 047325 65 NIRVWKNLKE-FCGFKASSGLVKAIVIS--GEKIFTGHQD---GKIRVWKISPKNQSVHKRAGTLPTLKDIFKSSIKPSN 138 (368)
Q Consensus 65 ~i~iw~~~~~-~~~~~~~~~~v~~~~~~--~~~l~s~~~d---g~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (368)
.|.++|.... ...+..+...+....|+ |+.|+..+.+ ..|.+|++.+++......
T Consensus 180 ~l~~~d~~g~~~~~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~l~~------------------- 240 (430)
T PRK00178 180 TLQRSDYDGARAVTLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQITN------------------- 240 (430)
T ss_pred EEEEECCCCCCceEEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEEccC-------------------
Confidence 3666776532 34455667778888887 7788766543 368888988765322111
Q ss_pred eeEecccceeeeeecCCCEeEEEEcCCCCEEEE-EeCCC--cEEEEEccCCeEEEEeecCCCceEEEEeCCCC-eEEE-E
Q 047325 139 YIEVRRHRTALWIRHSDAVSCMSLDQDCGLLYT-ASWDR--TFKVWRISDSKCLESVSAHDDAVNSVVSSSEG-LIFT-G 213 (368)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~~~d~--~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~-~ 213 (368)
....+....|+|||+.|+. ...+| .|.++|+.+++.. .+..+........|+|++ .++. .
T Consensus 241 --------------~~g~~~~~~~SpDG~~la~~~~~~g~~~Iy~~d~~~~~~~-~lt~~~~~~~~~~~spDg~~i~f~s 305 (430)
T PRK00178 241 --------------FEGLNGAPAWSPDGSKLAFVLSKDGNPEIYVMDLASRQLS-RVTNHPAIDTEPFWGKDGRTLYFTS 305 (430)
T ss_pred --------------CCCCcCCeEECCCCCEEEEEEccCCCceEEEEECCCCCeE-EcccCCCCcCCeEECCCCCEEEEEE
Confidence 2223446899999998764 44444 6888899887654 344455556677899998 4544 4
Q ss_pred cCCC--eEEEEEcCCCCCCcccccceeeccccccEEEEEEcCCCCEEEEecCC-C--cEEEEeCCCccccceeeeccceE
Q 047325 214 SADG--TVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSSSRSIVYCGSSD-G--LVNFWEREKQLSHGGVLKGHKLA 288 (368)
Q Consensus 214 ~~dg--~i~i~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d-g--~i~i~d~~~~~~~~~~~~~~~~~ 288 (368)
..++ .|+++|+..+.. ..+...........|+|+++.|+....+ + .|.++|+.++.... ........
T Consensus 306 ~~~g~~~iy~~d~~~g~~-------~~lt~~~~~~~~~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg~~~~-lt~~~~~~ 377 (430)
T PRK00178 306 DRGGKPQIYKVNVNGGRA-------ERVTFVGNYNARPRLSADGKTLVMVHRQDGNFHVAAQDLQRGSVRI-LTDTSLDE 377 (430)
T ss_pred CCCCCceEEEEECCCCCE-------EEeecCCCCccceEECCCCCEEEEEEccCCceEEEEEECCCCCEEE-ccCCCCCC
Confidence 3444 566677654421 1111111223456899999998876643 3 57888988654321 11111222
Q ss_pred EEEEEeCCCEEEEeeCC-C--eEEEEecCCCceeeeEeeeccccCeeEEEEecC
Q 047325 289 VLCLAAAGKLVFSGSAD-K--TICVWRRDGAIHTCLSVLTGHTGPVKCLAVEED 339 (368)
Q Consensus 289 ~~~~~~~~~~l~~~~~d-g--~i~iw~~~~~~~~~~~~~~~h~~~v~~l~~~~~ 339 (368)
-..++|||+.++..+.+ | .|.+.+++.. ....+..+.+.+...+|+|-
T Consensus 378 ~p~~spdg~~i~~~~~~~g~~~l~~~~~~g~---~~~~l~~~~g~~~~p~ws~~ 428 (430)
T PRK00178 378 SPSVAPNGTMLIYATRQQGRGVLMLVSINGR---VRLPLPTAQGEVREPSWSPY 428 (430)
T ss_pred CceECCCCCEEEEEEecCCceEEEEEECCCC---ceEECcCCCCCcCCCccCCC
Confidence 34789999988776643 3 4666666543 22334444556677777763
No 253
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.44 E-value=1e-12 Score=109.18 Aligned_cols=282 Identities=13% Similarity=0.195 Sum_probs=176.0
Q ss_pred eeeccCcCCcEEEEEe-c-CCEEEEccCCCcEEEEcCCcc---------eecccCCCCCeeEEEEeCCEEEEEeCCCeEE
Q 047325 37 IGSLVREEGHIYSLAA-S-KDLLYTGSDSKNIRVWKNLKE---------FCGFKASSGLVKAIVISGEKIFTGHQDGKIR 105 (368)
Q Consensus 37 ~~~~~~h~~~i~~~~~-~-~~~l~s~~~dg~i~iw~~~~~---------~~~~~~~~~~v~~~~~~~~~l~s~~~dg~i~ 105 (368)
+..+.||...|..++- + .+-+++++.|++|++|.+..+ ..+++.|..+|.++.|-.+.-..++.||.|.
T Consensus 728 L~nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~ScD~giH 807 (1034)
T KOG4190|consen 728 LCNFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIASCDGGIH 807 (1034)
T ss_pred eecccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceeeeccCcce
Confidence 5678899999998864 3 458999999999999986522 3357899999999999844434456699999
Q ss_pred EEeecCCCccccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcCCCCEEEEE-eCCCcEEEEEcc
Q 047325 106 VWKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCGLLYTA-SWDRTFKVWRIS 184 (368)
Q Consensus 106 vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~d~~i~iwd~~ 184 (368)
+||.--+........... .+....|.|+.- -+...++++ +...+|+++|.+
T Consensus 808 lWDPFigr~Laq~~dapk---------------------------~~a~~~ikcl~n-v~~~iliAgcsaeSTVKl~DaR 859 (1034)
T KOG4190|consen 808 LWDPFIGRLLAQMEDAPK---------------------------EGAGGNIKCLEN-VDRHILIAGCSAESTVKLFDAR 859 (1034)
T ss_pred eecccccchhHhhhcCcc---------------------------cCCCceeEeccc-Ccchheeeeccchhhheeeecc
Confidence 999876654332221110 001223344321 133444444 778999999999
Q ss_pred CCeEEEEee-----cCCCceEEEEeCCCC-eEEEEcCCCeEEEEEcCCCCCCcccccceeeccccccEEEEEEcCCCCEE
Q 047325 185 DSKCLESVS-----AHDDAVNSVVSSSEG-LIFTGSADGTVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSSSRSIV 258 (368)
Q Consensus 185 ~~~~~~~~~-----~~~~~v~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l 258 (368)
..+-...++ +.+..+.+++..+.| +++++-.+|.|.+.|.|++.. +..+...+.....++ .|..+.|
T Consensus 860 sce~~~E~kVcna~~Pna~~R~iaVa~~GN~lAa~LSnGci~~LDaR~G~v------INswrpmecdllqla-apsdq~L 932 (1034)
T KOG4190|consen 860 SCEWTCELKVCNAPGPNALTRAIAVADKGNKLAAALSNGCIAILDARNGKV------INSWRPMECDLLQLA-APSDQAL 932 (1034)
T ss_pred cccceeeEEeccCCCCchheeEEEeccCcchhhHHhcCCcEEEEecCCCce------eccCCcccchhhhhc-CchhHHH
Confidence 887665554 345678999999998 999999999999999998732 333333333333333 3455667
Q ss_pred EEecCCCcEEE-EeCCCccccceeeeccceEEEEEEeCCCEEEEeeCCCeEEEEecCCCc--eeeeEee--eccccCeeE
Q 047325 259 YCGSSDGLVNF-WEREKQLSHGGVLKGHKLAVLCLAAAGKLVFSGSADKTICVWRRDGAI--HTCLSVL--TGHTGPVKC 333 (368)
Q Consensus 259 ~~~~~dg~i~i-~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~--~~~~~~~--~~h~~~v~~ 333 (368)
+....|..+.+ |..-.+.... ..+..+.+..-+..-|.-|+++...+.+.+|.-.... ...+..+ ....+..++
T Consensus 933 ~~saldHslaVnWhaldgimh~-q~kpppepahflqsvgpSLV~a~~Gn~lgVYad~a~~ha~stitKiR~d~f~G~lTa 1011 (1034)
T KOG4190|consen 933 AQSALDHSLAVNWHALDGIMHL-QDKPPPEPAHFLQSVGPSLVTAQNGNILGVYADSAELHAESTITKIRPDEFPGTLTA 1011 (1034)
T ss_pred HhhcccceeEeeehhcCCeeee-ccCCCCcchhhhhccCceeEEeccCcEEEEEecchhhhhhhhhccccccccCCccce
Confidence 77777777877 7654443321 1112222222223346667777767777887421110 0111111 234456788
Q ss_pred EEEecCCeeeecCCcceEEEEEeeCCccccccc
Q 047325 334 LAVEEDRDSSSSTSSCAQRWIVYSGSLDKSDDD 366 (368)
Q Consensus 334 l~~~~~~~~~~~~~~~~~~w~l~sg~~D~~v~i 366 (368)
++.-|-.. -+..|.+-|.|++
T Consensus 1012 la~LPLN~------------afLaGne~G~IaL 1032 (1034)
T KOG4190|consen 1012 LAPLPLNC------------AFLAGNEHGAIAL 1032 (1034)
T ss_pred eeeccccc------------hhhccCCCCceee
Confidence 88888776 3455666666654
No 254
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.43 E-value=1.4e-12 Score=111.73 Aligned_cols=283 Identities=14% Similarity=0.171 Sum_probs=183.5
Q ss_pred EEEecCCEEEEccCCCcEEEEcCCcceec--ccCC--CCCeeEEEEe----CCEEEEEeCCCeEEEEeecCCCccccccC
Q 047325 49 SLAASKDLLYTGSDSKNIRVWKNLKEFCG--FKAS--SGLVKAIVIS----GEKIFTGHQDGKIRVWKISPKNQSVHKRA 120 (368)
Q Consensus 49 ~~~~~~~~l~s~~~dg~i~iw~~~~~~~~--~~~~--~~~v~~~~~~----~~~l~s~~~dg~i~vw~~~~~~~~~~~~~ 120 (368)
++...|+-+|.++.-|.. +-|+...... +..| .-.|-.+.|+ -.+-++......-.+|++......
T Consensus 31 si~p~grdi~lAsr~gl~-i~dld~p~~ppr~l~h~tpw~vad~qws~h~a~~~wiVsts~qkaiiwnlA~ss~~----- 104 (1081)
T KOG0309|consen 31 SINPSGRDIVLASRQGLY-IIDLDDPFTPPRWLHHITPWQVADVQWSPHPAKPYWIVSTSNQKAIIWNLAKSSSN----- 104 (1081)
T ss_pred eeccccchhhhhhhcCeE-EEeccCCCCCceeeeccCcchhcceecccCCCCceeEEecCcchhhhhhhhcCCcc-----
Confidence 344557778888887744 5565533221 1112 2235555665 234444444455568887644311
Q ss_pred CccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcCCC-CEEEEEeCCCcEEEEEccCCe-EEEEeecCCCc
Q 047325 121 GTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDC-GLLYTASWDRTFKVWRISDSK-CLESVSAHDDA 198 (368)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~iwd~~~~~-~~~~~~~~~~~ 198 (368)
.-...+.||...|+.+.|+|+. ..+++++.|..++.||+++.. ++.....-...
T Consensus 105 ------------------------aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~~w~s~ 160 (1081)
T KOG0309|consen 105 ------------------------AIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTSSWRSA 160 (1081)
T ss_pred ------------------------ceEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCcceeeeeccccc
Confidence 1123456799999999999954 588999999999999998854 45555544555
Q ss_pred eEEEEeCCCC-eEEEEcCCCeEEEEEcCCCCCCcccccceeeccccccEEEEEEcC-CCCEEEEecCCCcEEEEeCCCcc
Q 047325 199 VNSVVSSSEG-LIFTGSADGTVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSS-SRSIVYCGSSDGLVNFWEREKQL 276 (368)
Q Consensus 199 v~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~ 276 (368)
...++|+-.. .+.+.+..+.|++||.+.+.. ++..+++|...+..++|.. ....+.+.+.||+|+.||..+..
T Consensus 161 asqVkwnyk~p~vlasshg~~i~vwd~r~gs~-----pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt 235 (1081)
T KOG0309|consen 161 ASQVKWNYKDPNVLASSHGNDIFVWDLRKGST-----PLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKST 235 (1081)
T ss_pred CceeeecccCcchhhhccCCceEEEeccCCCc-----ceEEecccceeeehHHHhhhhhhhhcccCCCCceeeecccccc
Confidence 6778888655 667777788999999997754 5667777888899998875 33468889999999999987543
Q ss_pred ccceeeeccceEE--EEEEeC--CCEEEEeeCCCeEEEEecCCC--------ceeeeEeeeccccCeeEEEEecCCeeee
Q 047325 277 SHGGVLKGHKLAV--LCLAAA--GKLVFSGSADKTICVWRRDGA--------IHTCLSVLTGHTGPVKCLAVEEDRDSSS 344 (368)
Q Consensus 277 ~~~~~~~~~~~~~--~~~~~~--~~~l~~~~~dg~i~iw~~~~~--------~~~~~~~~~~h~~~v~~l~~~~~~~~~~ 344 (368)
...........++ -++-|- |.++.---.+..+.+++-+.. ...++.++.||.+.|....|-..+. .
T Consensus 236 ~e~~~~vtt~~piw~~r~~Pfg~g~~~mp~~G~n~v~~~~c~n~d~e~n~~~~~~pVh~F~GH~D~V~eFlWR~r~e--~ 313 (1081)
T KOG0309|consen 236 TESKRTVTTNFPIWRGRYLPFGEGYCIMPMVGGNMVPQLRCENSDLEWNVFDLNTPVHTFVGHDDVVLEFLWRKRKE--C 313 (1081)
T ss_pred cccceeccccCcceeccccccCceeEeccccCCeeeeeccccchhhhhccccCCcceeeecCcchHHHHHhhhhccc--c
Confidence 3222222222222 233332 222222222234444433211 2367899999999999888876554 3
Q ss_pred cCCcceEEEEEeeCCcccccccCC
Q 047325 345 STSSCAQRWIVYSGSLDKSDDDVH 368 (368)
Q Consensus 345 ~~~~~~~~w~l~sg~~D~~v~i~h 368 (368)
.++.+.+.++|+|=|.|..+|+|.
T Consensus 314 ~~d~d~rdfQLVTWSkD~~lrlWp 337 (1081)
T KOG0309|consen 314 DGDYDSRDFQLVTWSKDQTLRLWP 337 (1081)
T ss_pred cCCCCccceeEEEeecCCceEeee
Confidence 345667788999999999999993
No 255
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=99.41 E-value=6.2e-10 Score=92.85 Aligned_cols=303 Identities=11% Similarity=0.106 Sum_probs=169.6
Q ss_pred EEEEEecCC-EEEEccCCCcEEEEcCCcceecccCCCCCeeEEEEe--CCEEEEE-----eCC-----CeEEEEeecCCC
Q 047325 47 IYSLAASKD-LLYTGSDSKNIRVWKNLKEFCGFKASSGLVKAIVIS--GEKIFTG-----HQD-----GKIRVWKISPKN 113 (368)
Q Consensus 47 i~~~~~~~~-~l~s~~~dg~i~iw~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~-----~~d-----g~i~vw~~~~~~ 113 (368)
....+++++ .+..-+.+..++|++.......+......+.++.|+ +.+|.+= ..+ -.+.+|+++++.
T Consensus 37 ~~v~~~S~~G~lfA~~~~~~v~i~~~~~~~~~lt~~~~~~~~L~fSP~g~yL~T~e~~~i~~~~~~~~pn~~v~~vet~~ 116 (566)
T KOG2315|consen 37 CNVFAYSNNGRLFAYSDNQVVKVFEIATLKVVLCVELKKTYDLLFSPKGNYLLTWEPWAIYGPKNASNPNVLVYNVETGV 116 (566)
T ss_pred ceeEEEcCCCcEEEEEcCCeEEEEEccCCcEEEEeccceeeeeeecccccccccccccccccCCCCCCCceeeeeeccce
Confidence 344445433 444455567899998765433232223378888887 6676542 222 347799998844
Q ss_pred ccccccCCccc----cc---eeee-eccCCCCceeEecccceeeeeecCCCEeEEEEcCCCC--EEEE-----EeCCCcE
Q 047325 114 QSVHKRAGTLP----TL---KDIF-KSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCG--LLYT-----ASWDRTF 178 (368)
Q Consensus 114 ~~~~~~~~~~~----~~---~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~l~~-----~~~d~~i 178 (368)
....+...... .. ..+. ........+.+........-.-|...|+.+.++|.+. .+++ .+.-+.+
T Consensus 117 ~~s~~q~k~Q~~W~~qfs~dEsl~arlv~nev~f~~~~~f~~~~~kl~~~~i~~f~lSpgp~~~~vAvyvPe~kGaPa~v 196 (566)
T KOG2315|consen 117 QRSQIQKKMQNGWVPQFSIDESLAARLVSNEVQFYDLGSFKTIQHKLSVSGITMLSLSPGPEPPFVAVYVPEKKGAPASV 196 (566)
T ss_pred ehhheehhhhcCcccccccchhhhhhhhcceEEEEecCCccceeeeeeccceeeEEecCCCCCceEEEEccCCCCCCcEE
Confidence 32222211111 00 0000 0000111112222222222233678899999998632 3333 2445679
Q ss_pred EEEEccCCeEEEEe---ecCCCceEEEEeCCCC--eEEEEc--CC---------CeEEEEEcCCCCCCcccccceeeccc
Q 047325 179 KVWRISDSKCLESV---SAHDDAVNSVVSSSEG--LIFTGS--AD---------GTVKVWKREQHGKGTKHSLAQTLLKQ 242 (368)
Q Consensus 179 ~iwd~~~~~~~~~~---~~~~~~v~~~~~~~~~--~l~~~~--~d---------g~i~i~d~~~~~~~~~~~~~~~~~~~ 242 (368)
+||.......-..+ .-....=..+.|++.| +|+.++ -| .++++.+++.. ....-...
T Consensus 197 ri~~~~~~~~~~~~a~ksFFkadkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~-------s~~V~L~k 269 (566)
T KOG2315|consen 197 RIYKYPEEGQHQPVANKSFFKADKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQGE-------SVSVPLLK 269 (566)
T ss_pred EEeccccccccchhhhccccccceeEEEeccCCceEEEEEEEeecCCCccccccceEEEEEecCc-------eEEEecCC
Confidence 99987632211111 1112222356788776 333332 23 35777777622 12223345
Q ss_pred cccEEEEEEcCCCCEEEE--ecCCCcEEEEeCCCccccceeeeccceEEEEEEeCCCEEEEeeC---CCeEEEEecCCCc
Q 047325 243 ECAVTALVVSSSRSIVYC--GSSDGLVNFWEREKQLSHGGVLKGHKLAVLCLAAAGKLVFSGSA---DKTICVWRRDGAI 317 (368)
Q Consensus 243 ~~~i~~~~~~~~~~~l~~--~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~---dg~i~iw~~~~~~ 317 (368)
.++|.++.|+|+++.+++ |-.-..+.|||++.... ..+.......+-++|.|++|+.++- -|.|-|||+.+.
T Consensus 270 ~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr~~~v--~df~egpRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n~- 346 (566)
T KOG2315|consen 270 EGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLRGKPV--FDFPEGPRNTAFFNPHGNIILLAGFGNLPGDMEVWDVPNR- 346 (566)
T ss_pred CCCceEEEECCCCCEEEEEEecccceEEEEcCCCCEe--EeCCCCCccceEECCCCCEEEEeecCCCCCceEEEeccch-
Confidence 789999999999986654 56677899999986432 2333334444668899999888775 478999999874
Q ss_pred eeeeEeeeccccCeeEEEEecCCeeeecCCcceEEEEEeeCCcccccccCC
Q 047325 318 HTCLSVLTGHTGPVKCLAVEEDRDSSSSTSSCAQRWIVYSGSLDKSDDDVH 368 (368)
Q Consensus 318 ~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~w~l~sg~~D~~v~i~h 368 (368)
+++..+..- .-+-..|+|||+++.++.-..++ . .|..++|||
T Consensus 347 -K~i~~~~a~--~tt~~eW~PdGe~flTATTaPRl-r-----vdNg~Kiwh 388 (566)
T KOG2315|consen 347 -KLIAKFKAA--NTTVFEWSPDGEYFLTATTAPRL-R-----VDNGIKIWH 388 (566)
T ss_pred -hhccccccC--CceEEEEcCCCcEEEEEeccccE-E-----ecCCeEEEE
Confidence 666666533 34567999999987766543332 1 266677776
No 256
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=99.40 E-value=1.3e-11 Score=92.81 Aligned_cols=237 Identities=16% Similarity=0.283 Sum_probs=143.9
Q ss_pred ccCcCC-cEEEEEecCC-EEEEccCCCcEEEEcCCcc--------------eeccc--CCCCCeeEEEEeCCEEEEEeCC
Q 047325 40 LVREEG-HIYSLAASKD-LLYTGSDSKNIRVWKNLKE--------------FCGFK--ASSGLVKAIVISGEKIFTGHQD 101 (368)
Q Consensus 40 ~~~h~~-~i~~~~~~~~-~l~s~~~dg~i~iw~~~~~--------------~~~~~--~~~~~v~~~~~~~~~l~s~~~d 101 (368)
..+|.+ .|+.+.+.-+ .|+++..++.+......+. ...+. ...++...+...++.++++..|
T Consensus 31 i~~~~d~~~~~~~~v~~~~lf~~e~~~~~ss~g~~r~~~~~~~~rt~~i~~~~~~a~~sep~p~~~~s~~~t~V~~~~~d 110 (319)
T KOG4714|consen 31 IMQHADVKLSKVSLSAEYILFTGETSSQIISLGKGRGRCISLWERDDGIDPFKVLAKNSEIDPNDACTMTDNRVCIGYAD 110 (319)
T ss_pred cccccceEEEEeechhhheeecccchhheeeeccceEEEechhhcccCcCceeeeeccCCCCCcccccccCCceEecCCC
Confidence 344443 1555666544 7888888877766653221 11222 2233444444458899999999
Q ss_pred CeEEEEeecCCCccccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcCCCCEEEEEeC-----CC
Q 047325 102 GKIRVWKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCGLLYTASW-----DR 176 (368)
Q Consensus 102 g~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-----d~ 176 (368)
|.+.+.+.+....... +.... |.+. .+.++...++.+.++.. -+
T Consensus 111 g~~~v~s~~~~~~~~~-~i~~~-----------------------------~~~~-as~~~~~~~~~i~s~~~g~~n~~d 159 (319)
T KOG4714|consen 111 GSLAVFSTDKDLALMS-RIPSI-----------------------------HSGS-ASRKICRHGNSILSGGCGNWNAQD 159 (319)
T ss_pred ceEEEEechHHHhhhh-hcccc-----------------------------cccc-cccceeecccEEecCCcceEeecc
Confidence 9999999876221111 11000 1111 11222233444444321 23
Q ss_pred cEEEEEccCCeEEEEeecCCCceEEEEeCCCC--eEEEEcCCCeEEEEEcCCCCCCcccccceeeccccccEEEEEEcC-
Q 047325 177 TFKVWRISDSKCLESVSAHDDAVNSVVSSSEG--LIFTGSADGTVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSS- 253 (368)
Q Consensus 177 ~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~--~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~- 253 (368)
..++|+++..+.+..-......|.+++-+|.. .+++|+.||.+-+||.|.... +...+..|+.++..+-|+|
T Consensus 160 ~~~a~~~~p~~t~~~~~~~~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~-----p~S~l~ahk~~i~eV~FHpk 234 (319)
T KOG4714|consen 160 NFYANTLDPIKTLIPSKKALDAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAM-----PVSLLKAHKAEIWEVHFHPK 234 (319)
T ss_pred ceeeecccccccccccccccccchhhhCCcccccEEEEecCCCeEEEEEcccccc-----hHHHHHHhhhhhhheeccCC
Confidence 45666665433222222223448899988876 889999999999999997633 5667788999999999999
Q ss_pred CCCEEEEecCCCcEEEEeCCCccccc-----------------------eeeeccceEEEEEEeCCCEEEEeeCCCeEEE
Q 047325 254 SRSIVYCGSSDGLVNFWEREKQLSHG-----------------------GVLKGHKLAVLCLAAAGKLVFSGSADKTICV 310 (368)
Q Consensus 254 ~~~~l~~~~~dg~i~i~d~~~~~~~~-----------------------~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i 310 (368)
++..|+++++||.+..||..+...-. ..+......|.+|..-|..|++|+.-+.|++
T Consensus 235 ~p~~Lft~sedGslw~wdas~~~l~i~~~~s~~s~WLsgD~v~s~i~i~~ll~~~~~SinsfDV~g~~lVcgtd~eaIyl 314 (319)
T KOG4714|consen 235 NPEHLFTCSEDGSLWHWDASTTFLSISNQASVISSWLSGDPVKSRIEITSLLPSRSLSINSFDVLGPCLVCGTDAEAIYL 314 (319)
T ss_pred CchheeEecCCCcEEEEcCCCceEEecCccccccccccCCcccceEeeeccccccceeeeeeeccCceEEeccccceEEE
Confidence 67799999999999999976321100 0011112223444455888999998888888
Q ss_pred Ee
Q 047325 311 WR 312 (368)
Q Consensus 311 w~ 312 (368)
++
T Consensus 315 ~~ 316 (319)
T KOG4714|consen 315 TR 316 (319)
T ss_pred ec
Confidence 74
No 257
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=99.39 E-value=3e-10 Score=87.17 Aligned_cols=181 Identities=18% Similarity=0.123 Sum_probs=127.1
Q ss_pred CCEeEEEEcC---CCC-EEEEEeCCCcEEEEEccCCeEEEEeecCCC------ceEEEEeCCCC-eEEEEcCCCeEEEEE
Q 047325 155 DAVSCMSLDQ---DCG-LLYTASWDRTFKVWRISDSKCLESVSAHDD------AVNSVVSSSEG-LIFTGSADGTVKVWK 223 (368)
Q Consensus 155 ~~v~~~~~~~---~~~-~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~------~v~~~~~~~~~-~l~~~~~dg~i~i~d 223 (368)
..+..+.|.. ++. .++-+..+|.|.++..........+++-.. ...++.|++.+ .++++..+|.+.+-+
T Consensus 70 s~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~ss~~L~~ls~~ki~~~~~lslD~~~~~~~i~vs~s~G~~~~v~ 149 (339)
T KOG0280|consen 70 STEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDESSVHLRGLSSKKISVVEALSLDISTSGTKIFVSDSRGSISGVY 149 (339)
T ss_pred cccceeeeeeccCCccceeeeccccceEEEEeeccceeeeeecccchhhhhheeeeEEEeeccCceEEEEcCCCcEEEEe
Confidence 4455566643 344 566677789999998766555555543221 24567888888 899999999999665
Q ss_pred cCCCCCCcccccceeeccccccEEEEEEcC-CCCEEEEecCCCcEEEEeCCCcc-ccceeeeccceEEEEEEe---CCCE
Q 047325 224 REQHGKGTKHSLAQTLLKQECAVTALVVSS-SRSIVYCGSSDGLVNFWEREKQL-SHGGVLKGHKLAVLCLAA---AGKL 298 (368)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~-~~~~~~~~~~~~~~~~~~---~~~~ 298 (368)
.... .....+..+.|+-....+.|+. +.+.+.+|+.|+.+..||++.+. ......+-|...|.++.. .+.+
T Consensus 150 ~t~~----~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i~~n~kvH~~GV~SI~ss~~~~~~ 225 (339)
T KOG0280|consen 150 ETEM----VLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFIWHNSKVHTSGVVSIYSSPPKPTY 225 (339)
T ss_pred ccee----eeeecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCcceeeecceeeecceEEEecCCCCCce
Confidence 5432 1223457788999999999986 45689999999999999999333 333335568888888874 5679
Q ss_pred EEEeeCCCeEEEEecCCCceeeeEeeeccccCeeEEEEecCCe
Q 047325 299 VFSGSADKTICVWRRDGAIHTCLSVLTGHTGPVKCLAVEEDRD 341 (368)
Q Consensus 299 l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~ 341 (368)
|++|+.|-.|++||.++.. +++..-. -.+.|+.+.++|.-.
T Consensus 226 I~TGsYDe~i~~~DtRnm~-kPl~~~~-v~GGVWRi~~~p~~~ 266 (339)
T KOG0280|consen 226 IATGSYDECIRVLDTRNMG-KPLFKAK-VGGGVWRIKHHPEIF 266 (339)
T ss_pred EEEeccccceeeeehhccc-CccccCc-cccceEEEEecchhh
Confidence 9999999999999987542 3443322 347788888887643
No 258
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=99.39 E-value=5.2e-11 Score=93.26 Aligned_cols=239 Identities=20% Similarity=0.249 Sum_probs=167.4
Q ss_pred ecccCCCCCeeEEEEe--CCEEEEEeCCCeEEEEeecCCCc-cccccCCccccceeeeeccCCCCceeEecccceeeeee
Q 047325 76 CGFKASSGLVKAIVIS--GEKIFTGHQDGKIRVWKISPKNQ-SVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIR 152 (368)
Q Consensus 76 ~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~vw~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (368)
..+++|...+++...- .+-+++.+.|.+++||--.+..+ ...... .
T Consensus 18 ~~~eG~~d~vn~~~l~~~e~gv~~~s~drtvrv~lkrds~q~wpsI~~-------------------------------~ 66 (404)
T KOG1409|consen 18 SKIEGSQDDVNAAILIPKEEGVISVSEDRTVRVWLKRDSGQYWPSIYH-------------------------------Y 66 (404)
T ss_pred hhhcCchhhhhhheeccCCCCeEEccccceeeeEEeccccccCchhhh-------------------------------h
Confidence 3567777777776554 67899999999999996544322 111111 1
Q ss_pred cCCCEeEEEEcCCCCEEEEEeCCCcEEEEEcc----CCeEEEEeecCCCceEEEEeCCCC-eEEEEcCCCeEEEEEcCCC
Q 047325 153 HSDAVSCMSLDQDCGLLYTASWDRTFKVWRIS----DSKCLESVSAHDDAVNSVVSSSEG-LIFTGSADGTVKVWKREQH 227 (368)
Q Consensus 153 ~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~----~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~dg~i~i~d~~~~ 227 (368)
...+++++.+.+....|++|-..|++.-+.+. .....+....|...+..+.|+... .+++.+.|..+.-.-.+.+
T Consensus 67 mP~~~~~~~y~~e~~~L~vg~~ngtvtefs~sedfnkm~~~r~~~~h~~~v~~~if~~~~e~V~s~~~dk~~~~hc~e~~ 146 (404)
T KOG1409|consen 67 MPSPCSAMEYVSESRRLYVGQDNGTVTEFALSEDFNKMTFLKDYLAHQARVSAIVFSLTHEWVLSTGKDKQFAWHCTESG 146 (404)
T ss_pred CCCCceEeeeeccceEEEEEEecceEEEEEhhhhhhhcchhhhhhhhhcceeeEEecCCceeEEEeccccceEEEeeccC
Confidence 56788999999999999999999999888653 344566667899999999888766 8888888887765555443
Q ss_pred CCCcccccceeeccccccEEEEEEcCCCCEEEEecCCCcEEEEeCC-CccccceeeeccceEEEEEEeC--CCEEEEeeC
Q 047325 228 GKGTKHSLAQTLLKQECAVTALVVSSSRSIVYCGSSDGLVNFWERE-KQLSHGGVLKGHKLAVLCLAAA--GKLVFSGSA 304 (368)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~-~~~~~~~~~~~~~~~~~~~~~~--~~~l~~~~~ 304 (368)
......... ...+++.+.-. +...|...|.|.+-.+. +...+...+.+|...+.+++++ ..+|++|..
T Consensus 147 ~~lg~Y~~~-------~~~t~~~~d~~--~~fvGd~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~~~~~LfSg~~ 217 (404)
T KOG1409|consen 147 NRLGGYNFE-------TPASALQFDAL--YAFVGDHSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDPGQRLLFSGAS 217 (404)
T ss_pred CcccceEee-------ccCCCCceeeE--EEEecccccceEEEEEeecCCceEEEEcCcccceEEEEEcCCCcEEEeccc
Confidence 221111110 01111111111 55566677777666554 3344556788999999888876 679999999
Q ss_pred CCeEEEEecCCCceeeeEeeeccccCeeEEEEecCCeeeecCCcceEEEEEeeCCcccccccC
Q 047325 305 DKTICVWRRDGAIHTCLSVLTGHTGPVKCLAVEEDRDSSSSTSSCAQRWIVYSGSLDKSDDDV 367 (368)
Q Consensus 305 dg~i~iw~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~w~l~sg~~D~~v~i~ 367 (368)
|..+.+||+.... ....++.+|...|..+...+--+ .+.+++.||.|-+|
T Consensus 218 d~~vi~wdigg~~-g~~~el~gh~~kV~~l~~~~~t~------------~l~S~~edg~i~~w 267 (404)
T KOG1409|consen 218 DHSVIMWDIGGRK-GTAYELQGHNDKVQALSYAQHTR------------QLISCGEDGGIVVW 267 (404)
T ss_pred cCceEEEeccCCc-ceeeeeccchhhhhhhhhhhhhe------------eeeeccCCCeEEEE
Confidence 9999999997664 34567789999999999888877 67777777777766
No 259
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.39 E-value=1.9e-10 Score=96.35 Aligned_cols=183 Identities=17% Similarity=0.267 Sum_probs=143.6
Q ss_pred CCEEEEccCCCcEEEEcCCcc-----eecccCCCCCeeEEEEe----------------------CCEEEEEeCCCeEEE
Q 047325 54 KDLLYTGSDSKNIRVWKNLKE-----FCGFKASSGLVKAIVIS----------------------GEKIFTGHQDGKIRV 106 (368)
Q Consensus 54 ~~~l~s~~~dg~i~iw~~~~~-----~~~~~~~~~~v~~~~~~----------------------~~~l~s~~~dg~i~v 106 (368)
.+++|....||.+|+||+... ......-.+..++..|. ...++-|...|.|.+
T Consensus 5 ~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~v~~ 84 (541)
T KOG4547|consen 5 LDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGSVLL 84 (541)
T ss_pred hheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCccEEE
Confidence 348999999999999997632 22222234455555552 125777888999999
Q ss_pred EeecCCCccccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcCCCCEEEEEeCCCcEEEEEccCC
Q 047325 107 WKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCGLLYTASWDRTFKVWRISDS 186 (368)
Q Consensus 107 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~ 186 (368)
|++..++.......+ .|.+.|+++.++.+-..|.+++.|+.+..|+....
T Consensus 85 ys~~~g~it~~~st~------------------------------~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~ 134 (541)
T KOG4547|consen 85 YSVAGGEITAKLSTD------------------------------KHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEK 134 (541)
T ss_pred EEecCCeEEEEEecC------------------------------CCCCcceeeecccccCceEecCCceeEEEEecccc
Confidence 999888765544432 29999999999999999999999999999999999
Q ss_pred eEEEEeecCCCceEEEEeCCCC-eEEEEcCCCeEEEEEcCCCCCCcccccceeeccccccEEEEEEcCC-----CCEEEE
Q 047325 187 KCLESVSAHDDAVNSVVSSSEG-LIFTGSADGTVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSSS-----RSIVYC 260 (368)
Q Consensus 187 ~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-----~~~l~~ 260 (368)
+.++..+.....+.+++.+||+ .+++++ +.|++||+++. ..+..+.+|.++|+++.|.-+ |.++++
T Consensus 135 ~~~~~~~~~~~~~~sl~is~D~~~l~~as--~~ik~~~~~~k------evv~~ftgh~s~v~t~~f~~~~~g~~G~~vLs 206 (541)
T KOG4547|consen 135 VIIRIWKEQKPLVSSLCISPDGKILLTAS--RQIKVLDIETK------EVVITFTGHGSPVRTLSFTTLIDGIIGKYVLS 206 (541)
T ss_pred eeeeeeccCCCccceEEEcCCCCEEEecc--ceEEEEEccCc------eEEEEecCCCcceEEEEEEEeccccccceeee
Confidence 9999999999999999999999 777766 68999999876 468899999999999999876 566555
Q ss_pred e-cCCCcEEEEeCCC
Q 047325 261 G-SSDGLVNFWEREK 274 (368)
Q Consensus 261 ~-~~dg~i~i~d~~~ 274 (368)
+ ..+..+.+|-.+.
T Consensus 207 sa~~~r~i~~w~v~~ 221 (541)
T KOG4547|consen 207 SAAAERGITVWVVEK 221 (541)
T ss_pred ccccccceeEEEEEc
Confidence 3 4455577776553
No 260
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.37 E-value=2.7e-10 Score=99.07 Aligned_cols=229 Identities=13% Similarity=0.030 Sum_probs=133.6
Q ss_pred cEEEEcCCcc-eecccCCCCCeeEEEEe--CCEEEEEeC-CC--eEEEEeecCCCccccccCCccccceeeeeccCCCCc
Q 047325 65 NIRVWKNLKE-FCGFKASSGLVKAIVIS--GEKIFTGHQ-DG--KIRVWKISPKNQSVHKRAGTLPTLKDIFKSSIKPSN 138 (368)
Q Consensus 65 ~i~iw~~~~~-~~~~~~~~~~v~~~~~~--~~~l~s~~~-dg--~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (368)
.|.++|.... ...+..+...+.+..|+ |+.|+..+. ++ .|.+||+.+++......
T Consensus 199 ~l~i~d~dG~~~~~l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~lt~------------------- 259 (448)
T PRK04792 199 QLMIADYDGYNEQMLLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREKVTS------------------- 259 (448)
T ss_pred EEEEEeCCCCCceEeecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEEecC-------------------
Confidence 5666676532 33445566678878887 777776543 33 58888887765321111
Q ss_pred eeEecccceeeeeecCCCEeEEEEcCCCCEEEE-EeCCCc--EEEEEccCCeEEEEeecCCCceEEEEeCCCC-eEE-EE
Q 047325 139 YIEVRRHRTALWIRHSDAVSCMSLDQDCGLLYT-ASWDRT--FKVWRISDSKCLESVSAHDDAVNSVVSSSEG-LIF-TG 213 (368)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~~~d~~--i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~-~~ 213 (368)
.........|+||++.|+. .+.++. |.++|+.+++.. .+..+........|+|++ .++ +.
T Consensus 260 --------------~~g~~~~~~wSPDG~~La~~~~~~g~~~Iy~~dl~tg~~~-~lt~~~~~~~~p~wSpDG~~I~f~s 324 (448)
T PRK04792 260 --------------FPGINGAPRFSPDGKKLALVLSKDGQPEIYVVDIATKALT-RITRHRAIDTEPSWHPDGKSLIFTS 324 (448)
T ss_pred --------------CCCCcCCeeECCCCCEEEEEEeCCCCeEEEEEECCCCCeE-ECccCCCCccceEECCCCCEEEEEE
Confidence 1122346789999997765 455664 778898877654 344455556778999999 444 44
Q ss_pred cCCC--eEEEEEcCCCCCCcccccceeeccccccEEEEEEcCCCCEEEEecC-CC--cEEEEeCCCccccceeeeccceE
Q 047325 214 SADG--TVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSSSRSIVYCGSS-DG--LVNFWEREKQLSHGGVLKGHKLA 288 (368)
Q Consensus 214 ~~dg--~i~i~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-dg--~i~i~d~~~~~~~~~~~~~~~~~ 288 (368)
..++ .|.++|+..+. ...+..........+|+|+|++|+..+. ++ .|.++|+.++.... ........
T Consensus 325 ~~~g~~~Iy~~dl~~g~-------~~~Lt~~g~~~~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g~~~~-lt~~~~d~ 396 (448)
T PRK04792 325 ERGGKPQIYRVNLASGK-------VSRLTFEGEQNLGGSITPDGRSMIMVNRTNGKFNIARQDLETGAMQV-LTSTRLDE 396 (448)
T ss_pred CCCCCceEEEEECCCCC-------EEEEecCCCCCcCeeECCCCCEEEEEEecCCceEEEEEECCCCCeEE-ccCCCCCC
Confidence 3444 46666665432 1111111122345689999998877654 33 45567777654321 11111112
Q ss_pred EEEEEeCCCEEEEeeC-CCe--EEEEecCCCceeeeEeeeccccCeeEEEEec
Q 047325 289 VLCLAAAGKLVFSGSA-DKT--ICVWRRDGAIHTCLSVLTGHTGPVKCLAVEE 338 (368)
Q Consensus 289 ~~~~~~~~~~l~~~~~-dg~--i~iw~~~~~~~~~~~~~~~h~~~v~~l~~~~ 338 (368)
-..++||++.|+..+. +|. +++++.+.. ....+..+.+.+...+|+|
T Consensus 397 ~ps~spdG~~I~~~~~~~g~~~l~~~~~~G~---~~~~l~~~~g~~~~p~Wsp 446 (448)
T PRK04792 397 SPSVAPNGTMVIYSTTYQGKQVLAAVSIDGR---FKARLPAGQGEVKSPAWSP 446 (448)
T ss_pred CceECCCCCEEEEEEecCCceEEEEEECCCC---ceEECcCCCCCcCCCccCC
Confidence 2468899998776554 333 666666443 3444555556677788877
No 261
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.37 E-value=2.1e-09 Score=90.55 Aligned_cols=266 Identities=13% Similarity=0.128 Sum_probs=150.2
Q ss_pred cCCCceeeeccCcCCcEEEEEec--CCEEEEccCCCcEEEEcCCcc--eecccCCCCCeeEEEEe--CCEEEEEe-CCCe
Q 047325 31 LPQNGLIGSLVREEGHIYSLAAS--KDLLYTGSDSKNIRVWKNLKE--FCGFKASSGLVKAIVIS--GEKIFTGH-QDGK 103 (368)
Q Consensus 31 ~~~~~~~~~~~~h~~~i~~~~~~--~~~l~s~~~dg~i~iw~~~~~--~~~~~~~~~~v~~~~~~--~~~l~s~~-~dg~ 103 (368)
....+.+..+....+.-..+.++ ++++++++.||.|.++|+.+. +...+. ......++++ |++++++. .++.
T Consensus 23 ~~t~~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~-G~~~~~i~~s~DG~~~~v~n~~~~~ 101 (369)
T PF02239_consen 23 GATNKVVARIPTGGAPHAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKV-GGNPRGIAVSPDGKYVYVANYEPGT 101 (369)
T ss_dssp TTT-SEEEEEE-STTEEEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE--SSEEEEEEE--TTTEEEEEEEETTE
T ss_pred CCCCeEEEEEcCCCCceeEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEec-CCCcceEEEcCCCCEEEEEecCCCc
Confidence 45567777777654443345565 458888889999999998754 333333 2234567776 88888765 6899
Q ss_pred EEEEeecCCCccccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcCCCCEEEEEeCC-CcEEEEE
Q 047325 104 IRVWKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCGLLYTASWD-RTFKVWR 182 (368)
Q Consensus 104 i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-~~i~iwd 182 (368)
+.++|.++.+..........+.. +....+..+..+|....++..-.| +.|.+.|
T Consensus 102 v~v~D~~tle~v~~I~~~~~~~~-------------------------~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVd 156 (369)
T PF02239_consen 102 VSVIDAETLEPVKTIPTGGMPVD-------------------------GPESRVAAIVASPGRPEFVVNLKDTGEIWVVD 156 (369)
T ss_dssp EEEEETTT--EEEEEE--EE-TT-------------------------TS---EEEEEE-SSSSEEEEEETTTTEEEEEE
T ss_pred eeEeccccccceeeccccccccc-------------------------ccCCCceeEEecCCCCEEEEEEccCCeEEEEE
Confidence 99999988775444332211000 023467788888888866665554 7888888
Q ss_pred ccCCeEEE-EeecCCCceEEEEeCCCC-eE-EEEcCCCeEEEEEcCCCCCC-----------------------------
Q 047325 183 ISDSKCLE-SVSAHDDAVNSVVSSSEG-LI-FTGSADGTVKVWKREQHGKG----------------------------- 230 (368)
Q Consensus 183 ~~~~~~~~-~~~~~~~~v~~~~~~~~~-~l-~~~~~dg~i~i~d~~~~~~~----------------------------- 230 (368)
....+.+. .............|.|++ ++ ++...+..|-++|.......
T Consensus 157 y~d~~~~~~~~i~~g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~k~v~~i~~g~~p~~~~~~~~php~~g~vw~~~ 236 (369)
T PF02239_consen 157 YSDPKNLKVTTIKVGRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTGKLVALIDTGKKPHPGPGANFPHPGFGPVWATS 236 (369)
T ss_dssp TTTSSCEEEEEEE--TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTTEEEEEEE-SSSBEETTEEEEEETTTEEEEEEE
T ss_pred eccccccceeeecccccccccccCcccceeeecccccceeEEEeeccceEEEEeeccccccccccccccCCCcceEEeec
Confidence 77654332 222244567788999998 44 44555668888877654210
Q ss_pred --------------------cccccceeeccccccEEEEEEcCCCCEEEEe----cCCCcEEEEeCCCccccceeeeccc
Q 047325 231 --------------------TKHSLAQTLLKQECAVTALVVSSSRSIVYCG----SSDGLVNFWEREKQLSHGGVLKGHK 286 (368)
Q Consensus 231 --------------------~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~----~~dg~i~i~d~~~~~~~~~~~~~~~ 286 (368)
...+....+.....+ .-+..+|+++++++. ...+.|.++|.++.+..........
T Consensus 237 ~~~~~~~~~ig~~~v~v~d~~~wkvv~~I~~~G~g-lFi~thP~s~~vwvd~~~~~~~~~v~viD~~tl~~~~~i~~~~~ 315 (369)
T PF02239_consen 237 GLGYFAIPLIGTDPVSVHDDYAWKVVKTIPTQGGG-LFIKTHPDSRYVWVDTFLNPDADTVQVIDKKTLKVVKTITPGPG 315 (369)
T ss_dssp BSSSSEEEEEE--TTT-STTTBTSEEEEEE-SSSS---EE--TT-SEEEEE-TT-SSHT-EEEEECCGTEEEE-HHHHHT
T ss_pred cccceecccccCCccccchhhcCeEEEEEECCCCc-ceeecCCCCccEEeeccCCCCCceEEEEECcCcceeEEEeccCC
Confidence 000011111112223 456779999999988 4558999999998754433222222
Q ss_pred --eEEEEEEeCCCEEEEeeC--CCeEEEEecCCCceeeeEeee
Q 047325 287 --LAVLCLAAAGKLVFSGSA--DKTICVWRRDGAIHTCLSVLT 325 (368)
Q Consensus 287 --~~~~~~~~~~~~l~~~~~--dg~i~iw~~~~~~~~~~~~~~ 325 (368)
..-..++++|+.+..+.. ++.|.+||..+. +.+.++.
T Consensus 316 ~~~~h~ef~~dG~~v~vS~~~~~~~i~v~D~~Tl--~~~~~i~ 356 (369)
T PF02239_consen 316 KRVVHMEFNPDGKEVWVSVWDGNGAIVVYDAKTL--KEKKRIP 356 (369)
T ss_dssp --EEEEEE-TTSSEEEEEEE--TTEEEEEETTTT--EEEEEEE
T ss_pred CcEeccEECCCCCEEEEEEecCCCEEEEEECCCc--EEEEEEE
Confidence 223567778987665544 347999988776 5555554
No 262
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=99.36 E-value=9.8e-10 Score=91.72 Aligned_cols=229 Identities=15% Similarity=0.177 Sum_probs=151.2
Q ss_pred EEEEecCC-EEEEccCCCcEEEEcCCcc-eecccCCCCCeeEEEEe-C---CEEEE-----EeCCCeEEEEeecCCCccc
Q 047325 48 YSLAASKD-LLYTGSDSKNIRVWKNLKE-FCGFKASSGLVKAIVIS-G---EKIFT-----GHQDGKIRVWKISPKNQSV 116 (368)
Q Consensus 48 ~~~~~~~~-~l~s~~~dg~i~iw~~~~~-~~~~~~~~~~v~~~~~~-~---~~l~s-----~~~dg~i~vw~~~~~~~~~ 116 (368)
++..|+.+ .|+.=-..+.+.+|++..- ....+.|...|+.+.++ + ..+++ .+.-+.+++|.........
T Consensus 129 W~~qfs~dEsl~arlv~nev~f~~~~~f~~~~~kl~~~~i~~f~lSpgp~~~~vAvyvPe~kGaPa~vri~~~~~~~~~~ 208 (566)
T KOG2315|consen 129 WVPQFSIDESLAARLVSNEVQFYDLGSFKTIQHKLSVSGITMLSLSPGPEPPFVAVYVPEKKGAPASVRIYKYPEEGQHQ 208 (566)
T ss_pred cccccccchhhhhhhhcceEEEEecCCccceeeeeeccceeeEEecCCCCCceEEEEccCCCCCCcEEEEeccccccccc
Confidence 56777755 4444445678999987752 22345577788888887 3 23332 4556679999876332211
Q ss_pred cccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcCCCC-EEEEEe-----------CCCcEEEEEcc
Q 047325 117 HKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCG-LLYTAS-----------WDRTFKVWRIS 184 (368)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~-----------~d~~i~iwd~~ 184 (368)
...... + ....=..+.|++-+. +|+.++ .+.++++.++.
T Consensus 209 ~~a~ks------F-----------------------Fkadkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~ 259 (566)
T KOG2315|consen 209 PVANKS------F-----------------------FKADKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQ 259 (566)
T ss_pred hhhhcc------c-----------------------cccceeEEEeccCCceEEEEEEEeecCCCccccccceEEEEEec
Confidence 111000 0 111122455665444 222221 13478888887
Q ss_pred CCeEEEEeecCCCceEEEEeCCCC---eEEEEcCCCeEEEEEcCCCCCCcccccceeeccccccEEEEEEcCCCCEEEEe
Q 047325 185 DSKCLESVSAHDDAVNSVVSSSEG---LIFTGSADGTVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSSSRSIVYCG 261 (368)
Q Consensus 185 ~~~~~~~~~~~~~~v~~~~~~~~~---~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~ 261 (368)
...+...+. ..++|.++.|++++ -++-|..-..+.|||++.. ..+.-.+++-+++-|+|.|++++.+
T Consensus 260 g~s~~V~L~-k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr~~---------~v~df~egpRN~~~fnp~g~ii~lA 329 (566)
T KOG2315|consen 260 GESVSVPLL-KEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLRGK---------PVFDFPEGPRNTAFFNPHGNIILLA 329 (566)
T ss_pred CceEEEecC-CCCCceEEEECCCCCEEEEEEecccceEEEEcCCCC---------EeEeCCCCCccceEECCCCCEEEEe
Confidence 444444443 57899999999999 4455666789999999843 3344456778899999999998876
Q ss_pred cC---CCcEEEEeCCCccccceeeeccceEEEEEEeCCCEEEEeeC------CCeEEEEecCCC
Q 047325 262 SS---DGLVNFWEREKQLSHGGVLKGHKLAVLCLAAAGKLVFSGSA------DKTICVWRRDGA 316 (368)
Q Consensus 262 ~~---dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~------dg~i~iw~~~~~ 316 (368)
+- -|.+.+||..+.+.+ ..+......+..++|||++++|+.. |+.++||++...
T Consensus 330 GFGNL~G~mEvwDv~n~K~i-~~~~a~~tt~~eW~PdGe~flTATTaPRlrvdNg~KiwhytG~ 392 (566)
T KOG2315|consen 330 GFGNLPGDMEVWDVPNRKLI-AKFKAANTTVFEWSPDGEYFLTATTAPRLRVDNGIKIWHYTGS 392 (566)
T ss_pred ecCCCCCceEEEeccchhhc-cccccCCceEEEEcCCCcEEEEEeccccEEecCCeEEEEecCc
Confidence 64 478999999985544 5666777888999999999999875 788999998653
No 263
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.36 E-value=1.8e-08 Score=84.96 Aligned_cols=270 Identities=13% Similarity=0.194 Sum_probs=153.2
Q ss_pred EEEEEec--CCEEEEccC----CCcEEEEcCCcc------eecccCCCCCeeEEEEe--CCEEEEEe-CCCeEEEEeecC
Q 047325 47 IYSLAAS--KDLLYTGSD----SKNIRVWKNLKE------FCGFKASSGLVKAIVIS--GEKIFTGH-QDGKIRVWKISP 111 (368)
Q Consensus 47 i~~~~~~--~~~l~s~~~----dg~i~iw~~~~~------~~~~~~~~~~v~~~~~~--~~~l~s~~-~dg~i~vw~~~~ 111 (368)
..-|+++ +++|++... +|.|..|++... +............++++ +++|+++. .+|.|.++++..
T Consensus 39 Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g~~p~~i~~~~~g~~l~vany~~g~v~v~~l~~ 118 (345)
T PF10282_consen 39 PSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGGSSPCHIAVDPDGRFLYVANYGGGSVSVFPLDD 118 (345)
T ss_dssp ECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESSSCEEEEEECTTSSEEEEEETTTTEEEEEEECT
T ss_pred CceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCCCCcEEEEEecCCCEEEEEEccCCeEEEEEccC
Confidence 3445554 446666554 578888876532 22222233444567775 77888876 489999999987
Q ss_pred CCccccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcCCCCEEEEEeC-CCcEEEEEccCCe--E
Q 047325 112 KNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCGLLYTASW-DRTFKVWRISDSK--C 188 (368)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d~~i~iwd~~~~~--~ 188 (368)
........... ... .....+ -........++.++|+++++++... ...|.+|++.... .
T Consensus 119 ~g~l~~~~~~~--~~~---g~g~~~-------------~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l 180 (345)
T PF10282_consen 119 DGSLGEVVQTV--RHE---GSGPNP-------------DRQEGPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDTGKL 180 (345)
T ss_dssp TSEEEEEEEEE--ESE---EEESST-------------TTTSSTCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS-TE
T ss_pred Ccccceeeeec--ccC---CCCCcc-------------cccccccceeEEECCCCCEEEEEecCCCEEEEEEEeCCCceE
Confidence 53221110000 000 000000 0002345678999999998888753 3479999997654 2
Q ss_pred --EEEee-cCCCceEEEEeCCCC--eEEEEcCCCeEEEEEcCCCCCCcccccceeec------cccccEEEEEEcCCCCE
Q 047325 189 --LESVS-AHDDAVNSVVSSSEG--LIFTGSADGTVKVWKREQHGKGTKHSLAQTLL------KQECAVTALVVSSSRSI 257 (368)
Q Consensus 189 --~~~~~-~~~~~v~~~~~~~~~--~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~------~~~~~i~~~~~~~~~~~ 257 (368)
...+. ......+.+.|+|++ ..++.-.++.|.++++..... ......... ........++++|++++
T Consensus 181 ~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g--~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~ 258 (345)
T PF10282_consen 181 TPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDG--SLTEIQTISTLPEGFTGENAPAEIAISPDGRF 258 (345)
T ss_dssp EEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTT--EEEEEEEEESCETTSCSSSSEEEEEE-TTSSE
T ss_pred EEeeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCC--ceeEEEEeeeccccccccCCceeEEEecCCCE
Confidence 22222 234567899999998 445556688999999983221 111111111 11225788999999998
Q ss_pred EEEec-CCCcEEEEeCCC--cccc-ceee--eccceEEEEEEeCCCEEEEee-CCCeEEEEecCCCceeeeEeee-cccc
Q 047325 258 VYCGS-SDGLVNFWEREK--QLSH-GGVL--KGHKLAVLCLAAAGKLVFSGS-ADKTICVWRRDGAIHTCLSVLT-GHTG 329 (368)
Q Consensus 258 l~~~~-~dg~i~i~d~~~--~~~~-~~~~--~~~~~~~~~~~~~~~~l~~~~-~dg~i~iw~~~~~~~~~~~~~~-~h~~ 329 (368)
|+++. ..+.|.+|++.. +... .... .+....-+.+++++++|+++. .++.|.+|+++...+.+...-. ..-.
T Consensus 259 lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~~G~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~~d~~tG~l~~~~~~~~~~ 338 (345)
T PF10282_consen 259 LYVSNRGSNSISVFDLDPATGTLTLVQTVPTGGKFPRHFAFSPDGRYLYVANQDSNTVSVFDIDPDTGKLTPVGSSVPIP 338 (345)
T ss_dssp EEEEECTTTEEEEEEECTTTTTEEEEEEEEESSSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEEESS
T ss_pred EEEEeccCCEEEEEEEecCCCceEEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCeEEEEEEeCCCCcEEEecccccCC
Confidence 87765 566899999842 2211 1111 133344577889999998876 5678999988644334333221 2234
Q ss_pred CeeEEEE
Q 047325 330 PVKCLAV 336 (368)
Q Consensus 330 ~v~~l~~ 336 (368)
...||.|
T Consensus 339 ~p~ci~f 345 (345)
T PF10282_consen 339 SPVCIVF 345 (345)
T ss_dssp SEEEEEE
T ss_pred CCEEEeC
Confidence 4566665
No 264
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.35 E-value=1.7e-09 Score=93.44 Aligned_cols=237 Identities=9% Similarity=-0.022 Sum_probs=132.3
Q ss_pred cEEEEcCCc-ceecccCCCCCeeEEEEe--CCE---EEEEeCCC--eEEEEeecCCCccccccCCccccceeeeeccCCC
Q 047325 65 NIRVWKNLK-EFCGFKASSGLVKAIVIS--GEK---IFTGHQDG--KIRVWKISPKNQSVHKRAGTLPTLKDIFKSSIKP 136 (368)
Q Consensus 65 ~i~iw~~~~-~~~~~~~~~~~v~~~~~~--~~~---l~s~~~dg--~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 136 (368)
.|.+.|... ....+......+..-.|+ |+. +++...+| .|.+.++.+++......
T Consensus 166 ~l~~~d~dG~~~~~lt~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~lt~----------------- 228 (428)
T PRK01029 166 ELWSVDYDGQNLRPLTQEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKKILA----------------- 228 (428)
T ss_pred eEEEEcCCCCCceEcccCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceEeec-----------------
Confidence 565666542 233344444555566777 443 33555554 46666776664322111
Q ss_pred CceeEecccceeeeeecCCCEeEEEEcCCCCEEEEEeC-----CCcEEEEEccCC---eEEEEeecCCCceEEEEeCCCC
Q 047325 137 SNYIEVRRHRTALWIRHSDAVSCMSLDQDCGLLYTASW-----DRTFKVWRISDS---KCLESVSAHDDAVNSVVSSSEG 208 (368)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-----d~~i~iwd~~~~---~~~~~~~~~~~~v~~~~~~~~~ 208 (368)
........+|+|||+.|+..+. +-.+.+|++..+ +................|+|||
T Consensus 229 ----------------~~g~~~~p~wSPDG~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG 292 (428)
T PRK01029 229 ----------------LQGNQLMPTFSPRKKLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDG 292 (428)
T ss_pred ----------------CCCCccceEECCCCCEEEEEECCCCCcceeEEEeecccCCCCcceEeecCCCCCcCCeEECCCC
Confidence 2233456799999998876653 223445777652 3333333333344677999999
Q ss_pred -eEEEE-cCCCeEEEEEcCCCCCCcccccceeeccccccEEEEEEcCCCCEEEEecCC---CcEEEEeCCCccccceeee
Q 047325 209 -LIFTG-SADGTVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSSSRSIVYCGSSD---GLVNFWEREKQLSHGGVLK 283 (368)
Q Consensus 209 -~l~~~-~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d---g~i~i~d~~~~~~~~~~~~ 283 (368)
.|+.. ..+|...+|.+....... ....+......+....|+|||+.|+..+.+ ..|.+||+.++........
T Consensus 293 ~~Laf~s~~~g~~~ly~~~~~~~g~---~~~~lt~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~~~Lt~~ 369 (428)
T PRK01029 293 TRLVFVSNKDGRPRIYIMQIDPEGQ---SPRLLTKKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRDYQLTTS 369 (428)
T ss_pred CEEEEEECCCCCceEEEEECccccc---ceEEeccCCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCeEEccCC
Confidence 55544 456655555443211000 122233334456788999999988876543 3689999987654321111
Q ss_pred ccceEEEEEEeCCCEEEEeeC---CCeEEEEecCCCceeeeEeeeccccCeeEEEEecCC
Q 047325 284 GHKLAVLCLAAAGKLVFSGSA---DKTICVWRRDGAIHTCLSVLTGHTGPVKCLAVEEDR 340 (368)
Q Consensus 284 ~~~~~~~~~~~~~~~l~~~~~---dg~i~iw~~~~~~~~~~~~~~~h~~~v~~l~~~~~~ 340 (368)
........++|||+.|+.... +..|+++|++.+....+ ....+.+...+|+|-.
T Consensus 370 ~~~~~~p~wSpDG~~L~f~~~~~g~~~L~~vdl~~g~~~~L---t~~~g~~~~p~Ws~~~ 426 (428)
T PRK01029 370 PENKESPSWAIDSLHLVYSAGNSNESELYLISLITKKTRKI---VIGSGEKRFPSWGAFP 426 (428)
T ss_pred CCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEe---ecCCCcccCceecCCC
Confidence 122334678889987764432 35688888877643333 2344456677888753
No 265
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=99.34 E-value=1.1e-11 Score=116.02 Aligned_cols=187 Identities=21% Similarity=0.349 Sum_probs=137.0
Q ss_pred CcCCcEEEEEecCC--EEEEccCCCcEEEEcCCc--ceecc-cCCCCCeeEEEEe--CCEEEEEeCCCeEEEEeecCCCc
Q 047325 42 REEGHIYSLAASKD--LLYTGSDSKNIRVWKNLK--EFCGF-KASSGLVKAIVIS--GEKIFTGHQDGKIRVWKISPKNQ 114 (368)
Q Consensus 42 ~h~~~i~~~~~~~~--~l~s~~~dg~i~iw~~~~--~~~~~-~~~~~~v~~~~~~--~~~l~s~~~dg~i~vw~~~~~~~ 114 (368)
.|-..|.++.-++. +.+||+.||.|++|.... .+..+ ..-...|+.+.|+ |+.+..+..||.+.+|......
T Consensus 2206 ~~v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~s~vtr~~f~~qGnk~~i~d~dg~l~l~q~~pk~- 2284 (2439)
T KOG1064|consen 2206 HPVENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTAGNSRVTRSRFNHQGNKFGIVDGDGDLSLWQASPKP- 2284 (2439)
T ss_pred cccCceeeecCCCCCceEEecCCCceEEEEeccCCCeEEEeeccCcchhhhhhhcccCCceeeeccCCceeecccCCcc-
Confidence 34455777766654 888999999999998653 33333 2334789999998 8999999999999999987221
Q ss_pred cccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcCCCCEEEEEe---CCCcEEEEEccCC---eE
Q 047325 115 SVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCGLLYTAS---WDRTFKVWRISDS---KC 188 (368)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~---~d~~i~iwd~~~~---~~ 188 (368)
...+..|.....+..|-. ..+++++ .++.+.+||..-. ..
T Consensus 2285 --------------------------------~~s~qchnk~~~Df~Fi~--s~~~tag~s~d~~n~~lwDtl~~~~~s~ 2330 (2439)
T KOG1064|consen 2285 --------------------------------YTSWQCHNKALSDFRFIG--SLLATAGRSSDNRNVCLWDTLLPPMNSL 2330 (2439)
T ss_pred --------------------------------eeccccCCccccceeeee--hhhhccccCCCCCcccchhcccCcccce
Confidence 112233888888888875 5666664 4679999996432 22
Q ss_pred EEEeecCCCceEEEEeCCCC-eEEEEcCCCeEEEEEcCCCCCCcccccceeeccccccEEEEEEcCCCCEEEEecCCCcE
Q 047325 189 LESVSAHDDAVNSVVSSSEG-LIFTGSADGTVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSSSRSIVYCGSSDGLV 267 (368)
Q Consensus 189 ~~~~~~~~~~v~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i 267 (368)
+. ..|.+.++++++.|.. .|++|+.+|.|++||++..+ ....+.. +. ...++++|+..|.+
T Consensus 2331 v~--~~H~~gaT~l~~~P~~qllisggr~G~v~l~D~rqrq------l~h~~~~---------~~-~~~~f~~~ss~g~i 2392 (2439)
T KOG1064|consen 2331 VH--TCHDGGATVLAYAPKHQLLISGGRKGEVCLFDIRQRQ------LRHTFQA---------LD-TREYFVTGSSEGNI 2392 (2439)
T ss_pred ee--eecCCCceEEEEcCcceEEEecCCcCcEEEeehHHHH------HHHHhhh---------hh-hhheeeccCcccce
Confidence 33 7899999999999998 99999999999999998642 2222222 33 56789999999999
Q ss_pred EEEeCCCcccccee
Q 047325 268 NFWEREKQLSHGGV 281 (368)
Q Consensus 268 ~i~d~~~~~~~~~~ 281 (368)
+||++.....+...
T Consensus 2393 kIw~~s~~~ll~~~ 2406 (2439)
T KOG1064|consen 2393 KIWRLSEFGLLHTF 2406 (2439)
T ss_pred EEEEccccchhhcC
Confidence 99999876444333
No 266
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=99.32 E-value=3.7e-09 Score=90.74 Aligned_cols=223 Identities=14% Similarity=0.109 Sum_probs=122.2
Q ss_pred EEEeCCEEEEEeCCCeEEEEeecCCCccccccCCcccccee-----eeeccCCCCceeEecccc-eeeeeec-CCCEeEE
Q 047325 88 IVISGEKIFTGHQDGKIRVWKISPKNQSVHKRAGTLPTLKD-----IFKSSIKPSNYIEVRRHR-TALWIRH-SDAVSCM 160 (368)
Q Consensus 88 ~~~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~-~~~~~~~-~~~v~~~ 160 (368)
....++.+++++.+|.+..+|..+++............... ..........+..+.... ...|... ...+.+.
T Consensus 61 p~v~~~~v~v~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~p~v~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~ 140 (377)
T TIGR03300 61 PAVAGGKVYAADADGTVVALDAETGKRLWRVDLDERLSGGVGADGGLVFVGTEKGEVIALDAEDGKELWRAKLSSEVLSP 140 (377)
T ss_pred eEEECCEEEEECCCCeEEEEEccCCcEeeeecCCCCcccceEEcCCEEEEEcCCCEEEEEECCCCcEeeeeccCceeecC
Confidence 34558899999999999999999888876655443211100 000011111111111100 0111111 1111111
Q ss_pred EEcCCCCEEEEEeCCCcEEEEEccCCeEEEEeecCCCceE-----EEEeCCCCeEEEEcCCCeEEEEEcCCCCCCccccc
Q 047325 161 SLDQDCGLLYTASWDRTFKVWRISDSKCLESVSAHDDAVN-----SVVSSSEGLIFTGSADGTVKVWKREQHGKGTKHSL 235 (368)
Q Consensus 161 ~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~-----~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~ 235 (368)
-.. .+..++.++.++.|..+|.++|+.+-.++....... +... .++.++.+..++.+..+|.+++........
T Consensus 141 p~v-~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~~-~~~~v~~~~~~g~v~ald~~tG~~~W~~~~ 218 (377)
T TIGR03300 141 PLV-ANGLVVVRTNDGRLTALDAATGERLWTYSRVTPALTLRGSASPVI-ADGGVLVGFAGGKLVALDLQTGQPLWEQRV 218 (377)
T ss_pred CEE-ECCEEEEECCCCeEEEEEcCCCceeeEEccCCCceeecCCCCCEE-ECCEEEEECCCCEEEEEEccCCCEeeeecc
Confidence 111 245677788899999999999998877654332211 1111 135778888899999999887643111110
Q ss_pred ceeecccc--ccEEEEEEcC--CCCEEEEecCCCcEEEEeCCCccccceeeeccceEEEEEEeCCCEEEEeeCCCeEEEE
Q 047325 236 AQTLLKQE--CAVTALVVSS--SRSIVYCGSSDGLVNFWEREKQLSHGGVLKGHKLAVLCLAAAGKLVFSGSADKTICVW 311 (368)
Q Consensus 236 ~~~~~~~~--~~i~~~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iw 311 (368)
.. ..+.. .....+.-+| .+..++.++.+|.++.+|.++++....... . .......++..++.++.||.++.+
T Consensus 219 ~~-~~g~~~~~~~~~~~~~p~~~~~~vy~~~~~g~l~a~d~~tG~~~W~~~~--~-~~~~p~~~~~~vyv~~~~G~l~~~ 294 (377)
T TIGR03300 219 AL-PKGRTELERLVDVDGDPVVDGGQVYAVSYQGRVAALDLRSGRVLWKRDA--S-SYQGPAVDDNRLYVTDADGVVVAL 294 (377)
T ss_pred cc-CCCCCchhhhhccCCccEEECCEEEEEEcCCEEEEEECCCCcEEEeecc--C-CccCceEeCCEEEEECCCCeEEEE
Confidence 00 00000 0000011111 345778888899999999988765532221 1 122333467888888999999999
Q ss_pred ecCCC
Q 047325 312 RRDGA 316 (368)
Q Consensus 312 ~~~~~ 316 (368)
|..++
T Consensus 295 d~~tG 299 (377)
T TIGR03300 295 DRRSG 299 (377)
T ss_pred ECCCC
Confidence 98776
No 267
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.29 E-value=1.1e-11 Score=103.23 Aligned_cols=210 Identities=14% Similarity=0.268 Sum_probs=142.8
Q ss_pred eecccCCCCCeeEEEEe--CCEEEEEeCCCeEEEEeecCCCccccccCCccccceeeeeccCCCCceeEecccceeeeee
Q 047325 75 FCGFKASSGLVKAIVIS--GEKIFTGHQDGKIRVWKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIR 152 (368)
Q Consensus 75 ~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (368)
++.+.+|...|.+++-- .+.+++++.|++|++|.+....-...... ....+..
T Consensus 728 L~nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsa-------------------------CQfTY~a 782 (1034)
T KOG4190|consen 728 LCNFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSA-------------------------CQFTYQA 782 (1034)
T ss_pred eecccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccce-------------------------eeeEhhh
Confidence 55688999999888654 67899999999999999976532111110 1223455
Q ss_pred cCCCEeEEEEcCCCCEEEEEeCCCcEEEEEccCCeEEEEeec-----CCCceEEEEeCCCCeE-EEEcCCCeEEEEEcCC
Q 047325 153 HSDAVSCMSLDQDCGLLYTASWDRTFKVWRISDSKCLESVSA-----HDDAVNSVVSSSEGLI-FTGSADGTVKVWKREQ 226 (368)
Q Consensus 153 ~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~-----~~~~v~~~~~~~~~~l-~~~~~dg~i~i~d~~~ 226 (368)
|+.+|.++.|..+.++++++ ||.|++||.--++++..... ..+.|.|+.-.....+ +.++...+|+++|.|.
T Consensus 783 Hkk~i~~igfL~~lr~i~Sc--D~giHlWDPFigr~Laq~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRs 860 (1034)
T KOG4190|consen 783 HKKPIHDIGFLADLRSIASC--DGGIHLWDPFIGRLLAQMEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARS 860 (1034)
T ss_pred ccCcccceeeeeccceeeec--cCcceeecccccchhHhhhcCcccCCCceeEecccCcchheeeeccchhhheeeeccc
Confidence 99999999999988877765 68899999988877664321 1223444432222244 4447789999999987
Q ss_pred CCCCcccccceeeccccccEEEEEEcCCCCEEEEecCCCcEEEEeCCCccccceeeeccceEEEEE-EeCCCEEEEeeCC
Q 047325 227 HGKGTKHSLAQTLLKQECAVTALVVSSSRSIVYCGSSDGLVNFWEREKQLSHGGVLKGHKLAVLCL-AAAGKLVFSGSAD 305 (368)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~d 305 (368)
.+-..+.+. ....+...-+++++..+.|+.++.+-.+|+|.+.|.++++.+. ....-....+.+ .|..+.|+....|
T Consensus 861 ce~~~E~kV-cna~~Pna~~R~iaVa~~GN~lAa~LSnGci~~LDaR~G~vIN-swrpmecdllqlaapsdq~L~~sald 938 (1034)
T KOG4190|consen 861 CEWTCELKV-CNAPGPNALTRAIAVADKGNKLAAALSNGCIAILDARNGKVIN-SWRPMECDLLQLAAPSDQALAQSALD 938 (1034)
T ss_pred ccceeeEEe-ccCCCCchheeEEEeccCcchhhHHhcCCcEEEEecCCCceec-cCCcccchhhhhcCchhHHHHhhccc
Confidence 643221111 1123445668999999999999999999999999999987553 222222222222 3567777777778
Q ss_pred CeEEE-Eec
Q 047325 306 KTICV-WRR 313 (368)
Q Consensus 306 g~i~i-w~~ 313 (368)
.++.+ |..
T Consensus 939 HslaVnWha 947 (1034)
T KOG4190|consen 939 HSLAVNWHA 947 (1034)
T ss_pred ceeEeeehh
Confidence 88888 754
No 268
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=99.28 E-value=3.9e-09 Score=87.28 Aligned_cols=289 Identities=11% Similarity=0.082 Sum_probs=173.7
Q ss_pred CcEEEEEecCC--EEEEccCCCcEEEEcCCcceecccCCCCCeeEEEEe--CCEEEEEeCCC---------------eEE
Q 047325 45 GHIYSLAASKD--LLYTGSDSKNIRVWKNLKEFCGFKASSGLVKAIVIS--GEKIFTGHQDG---------------KIR 105 (368)
Q Consensus 45 ~~i~~~~~~~~--~l~s~~~dg~i~iw~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg---------------~i~ 105 (368)
-++..++++|. +|++.... -|.+|.-...-.........|..+.|+ +.||.+=+..+ .+.
T Consensus 33 ~p~~~~~~SP~G~~l~~~~~~-~V~~~~g~~~~~l~~~~~~~V~~~~fSP~~kYL~tw~~~pi~~pe~e~sp~~~~n~~~ 111 (561)
T COG5354 33 WPVAYVSESPLGTYLFSEHAA-GVECWGGPSKAKLVRFRHPDVKYLDFSPNEKYLVTWSREPIIEPEIEISPFTSKNNVF 111 (561)
T ss_pred cchhheeecCcchheehhhcc-ceEEccccchhheeeeecCCceecccCcccceeeeeccCCccChhhccCCccccCcee
Confidence 34566666644 77766654 488998654322222233457777776 77888765444 489
Q ss_pred EEeecCCCccccccCCcccccee-eeeccCCCCceeEecccceeeee------e------cCCCEeEEEEcCCC--CEEE
Q 047325 106 VWKISPKNQSVHKRAGTLPTLKD-IFKSSIKPSNYIEVRRHRTALWI------R------HSDAVSCMSLDQDC--GLLY 170 (368)
Q Consensus 106 vw~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~------~------~~~~v~~~~~~~~~--~~l~ 170 (368)
+||..++.....+.....+.... +............+......+.. . ....|....|+|.+ ..|+
T Consensus 112 vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~~D~y~ARvv~~sl~i~e~t~n~~~~p~~~lr~~gi~dFsisP~~n~~~la 191 (561)
T COG5354 112 VWDIASGMIVFSFNGISQPYLGWPVLKFSIDDKYVARVVGSSLYIHEITDNIEEHPFKNLRPVGILDFSISPEGNHDELA 191 (561)
T ss_pred EEeccCceeEeeccccCCcccccceeeeeecchhhhhhccCeEEEEecCCccccCchhhccccceeeEEecCCCCCceEE
Confidence 99999988766655544432221 22222222211111111111111 0 12467788888853 3333
Q ss_pred E-----EeCCCcEEEEEccCCeEEEEeecCCCceEEEEeCCCC-eEEE-E---c-------CCCeEEEEEcCCCCCCccc
Q 047325 171 T-----ASWDRTFKVWRISDSKCLESVSAHDDAVNSVVSSSEG-LIFT-G---S-------ADGTVKVWKREQHGKGTKH 233 (368)
Q Consensus 171 ~-----~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~-~---~-------~dg~i~i~d~~~~~~~~~~ 233 (368)
. .+..+.+++|.+..+..+.+..-....=..+.|.+.| +|++ . . ....+++++++..
T Consensus 192 ~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk~~~~qLkW~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~e~------ 265 (561)
T COG5354 192 YWTPEKLNKPAMVRILSIPKNSVLVTKNLFKVSGVQLKWQVLGKYLLVLVMTHTKSNKSYFGESNLYLLRITER------ 265 (561)
T ss_pred EEccccCCCCcEEEEEEccCCCeeeeeeeEeecccEEEEecCCceEEEEEEEeeecccceeccceEEEEeeccc------
Confidence 3 2457789999998777665544333334567888877 2221 1 1 1356788888743
Q ss_pred ccceeeccccccEEEEEEcCCCCEEEE--ecCCCcEEEEeCCCccccceeeeccceEEEEEEeCCCEEEEeeCC---CeE
Q 047325 234 SLAQTLLKQECAVTALVVSSSRSIVYC--GSSDGLVNFWEREKQLSHGGVLKGHKLAVLCLAAAGKLVFSGSAD---KTI 308 (368)
Q Consensus 234 ~~~~~~~~~~~~i~~~~~~~~~~~l~~--~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d---g~i 308 (368)
.........++|...+|.|.++.+++ |-.+..+.++|++.... ............|+|.+++++.++-| |.+
T Consensus 266 -~i~V~~~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~Nl~--~~~Pe~~rNT~~fsp~~r~il~agF~nl~gni 342 (561)
T COG5354 266 -SIPVEKDLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGNLR--FYFPEQKRNTIFFSPHERYILFAGFDNLQGNI 342 (561)
T ss_pred -ccceeccccccceeeeecccCCceeEEecccccceeecccccceE--EecCCcccccccccCcccEEEEecCCccccce
Confidence 12222256789999999998886665 45788899999997622 34444445556789999999987765 679
Q ss_pred EEEecCCCceeeeEeeeccccCeeEEEEecCCeeeecC
Q 047325 309 CVWRRDGAIHTCLSVLTGHTGPVKCLAVEEDRDSSSST 346 (368)
Q Consensus 309 ~iw~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~ 346 (368)
-+||.... ..++..+.+- ..+-+.|+||++++.++
T Consensus 343 ~i~~~~~r-f~~~~~~~~~--n~s~~~wspd~qF~~~~ 377 (561)
T COG5354 343 EIFDPAGR-FKVAGAFNGL--NTSYCDWSPDGQFYDTD 377 (561)
T ss_pred EEeccCCc-eEEEEEeecC--CceEeeccCCceEEEec
Confidence 99987654 3444344432 24456899999987654
No 269
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=99.27 E-value=1.5e-10 Score=99.43 Aligned_cols=239 Identities=12% Similarity=0.103 Sum_probs=162.9
Q ss_pred CCCeeEEEEe--CCEEEEEeCCCeEEEEeecCCCccccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeE
Q 047325 82 SGLVKAIVIS--GEKIFTGHQDGKIRVWKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSC 159 (368)
Q Consensus 82 ~~~v~~~~~~--~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 159 (368)
.....++.|+ ..+++.|+.||.+++..+.+.........-..+ ..-.-.+.+.||...|..
T Consensus 14 nvkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~-----------------snLsmNQtLeGH~~sV~v 76 (1189)
T KOG2041|consen 14 NVKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAA-----------------SNLSMNQTLEGHNASVMV 76 (1189)
T ss_pred CceEEEEEEcccCCeEEeccccceeEEEEccccCCcccccccccc-----------------cccchhhhhccCcceEEE
Confidence 3457789998 789999999999999998876533222210000 001123456789999999
Q ss_pred EEEcCCCCEEEEEeCCCcEEEEEccCCeEEEEe--ecCCCceEEEEeCCCC-eEEEEcCCCeEEEEEcCCCCCCcccccc
Q 047325 160 MSLDQDCGLLYTASWDRTFKVWRISDSKCLESV--SAHDDAVNSVVSSSEG-LIFTGSADGTVKVWKREQHGKGTKHSLA 236 (368)
Q Consensus 160 ~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~--~~~~~~v~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~ 236 (368)
+.|+.+.+.|-+...+|.|.+|-+-.+.-...+ ....+.|.+++|..+| .+.....||.|.+=.++.+.- .-
T Consensus 77 vTWNe~~QKLTtSDt~GlIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsvdGNRI-----wg 151 (1189)
T KOG2041|consen 77 VTWNENNQKLTTSDTSGLIIVWMLYKGSWCEEMINNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSVDGNRI-----WG 151 (1189)
T ss_pred EEeccccccccccCCCceEEEEeeecccHHHHHhhCcCccEEEEEEEcCCCcEEEEEEccCCEEEEeecccee-----cc
Confidence 999999999999999999999998776533222 1245678999999999 899999999998877764311 11
Q ss_pred eeeccccccEEEEEEcCCCCEEEEecCCCcEEEEeCCCcccccee----------e--eccceEEEE--------EEeCC
Q 047325 237 QTLLKQECAVTALVVSSSRSIVYCGSSDGLVNFWEREKQLSHGGV----------L--KGHKLAVLC--------LAAAG 296 (368)
Q Consensus 237 ~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~----------~--~~~~~~~~~--------~~~~~ 296 (368)
+.+.+ .....+.|++|.+.++.+-.+|.+++||.+........ + .+|...-.+ +-|+.
T Consensus 152 KeLkg--~~l~hv~ws~D~~~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdr 229 (1189)
T KOG2041|consen 152 KELKG--QLLAHVLWSEDLEQALFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDR 229 (1189)
T ss_pred hhcch--heccceeecccHHHHHhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCC
Confidence 11111 12346789999999988999999999997643221100 0 112211122 22467
Q ss_pred CEEEEeeCCCeEEEEecCCCceeeeEeeeccccCeeEEEEecCCeeeecCC
Q 047325 297 KLVFSGSADKTICVWRRDGAIHTCLSVLTGHTGPVKCLAVEEDRDSSSSTS 347 (368)
Q Consensus 297 ~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~ 347 (368)
..|+++-.+|.+.|-.-.+.....+.. ..-.|....|+++|.++|.++
T Consensus 230 P~lavcy~nGr~QiMR~eND~~Pvv~d---tgm~~vgakWnh~G~vLAvcG 277 (1189)
T KOG2041|consen 230 PRLAVCYANGRMQIMRSENDPEPVVVD---TGMKIVGAKWNHNGAVLAVCG 277 (1189)
T ss_pred CEEEEEEcCceehhhhhcCCCCCeEEe---cccEeecceecCCCcEEEEcc
Confidence 789999999999998655442222221 225688999999999887664
No 270
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=99.26 E-value=6.8e-08 Score=76.92 Aligned_cols=252 Identities=12% Similarity=0.203 Sum_probs=160.7
Q ss_pred CCcEEEEcCCcc-----eecccCCCCCeeEEEEe--CCEEEEEeCC---CeEEEEeecCC--CccccccCCccccceeee
Q 047325 63 SKNIRVWKNLKE-----FCGFKASSGLVKAIVIS--GEKIFTGHQD---GKIRVWKISPK--NQSVHKRAGTLPTLKDIF 130 (368)
Q Consensus 63 dg~i~iw~~~~~-----~~~~~~~~~~v~~~~~~--~~~l~s~~~d---g~i~vw~~~~~--~~~~~~~~~~~~~~~~~~ 130 (368)
+.-|++|++.+. ....-.+.+..+-|+++ .++|+++-.+ |.|..|.++.. .....-...
T Consensus 15 s~gI~v~~ld~~~g~l~~~~~v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~--------- 85 (346)
T COG2706 15 SQGIYVFNLDTKTGELSLLQLVAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQT--------- 85 (346)
T ss_pred CCceEEEEEeCcccccchhhhccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccc---------
Confidence 456999987632 22234566777888888 5578887654 77888888753 221111100
Q ss_pred eccCCCCceeEecccceeeeeecCCCEeEEEEcCCCCEEEEEeC-CCcEEEEEccC-CeEEEE--eecCCCc--------
Q 047325 131 KSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCGLLYTASW-DRTFKVWRISD-SKCLES--VSAHDDA-------- 198 (368)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d~~i~iwd~~~-~~~~~~--~~~~~~~-------- 198 (368)
. ...+-+.+++++++++++++.. .|.|.++-++. |.+... ...|.+.
T Consensus 86 -------------------~--~g~~p~yvsvd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~ 144 (346)
T COG2706 86 -------------------L--PGSPPCYVSVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQES 144 (346)
T ss_pred -------------------c--CCCCCeEEEECCCCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccC
Confidence 0 1223378999999999988864 57899998865 432211 1224333
Q ss_pred --eEEEEeCCCC-eEEEEcC-CCeEEEEEcCCCCCCcccccceeeccccccEEEEEEcCCCCEEEEec-CCCcEEEEeCC
Q 047325 199 --VNSVVSSSEG-LIFTGSA-DGTVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSSSRSIVYCGS-SDGLVNFWERE 273 (368)
Q Consensus 199 --v~~~~~~~~~-~l~~~~~-dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~i~i~d~~ 273 (368)
+....+.|++ +|++..- --.|.+|++..+.. .... ..........+-|.|+|++++..+.+ -+++|.+|...
T Consensus 145 ~h~H~a~~tP~~~~l~v~DLG~Dri~~y~~~dg~L-~~~~--~~~v~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~ 221 (346)
T COG2706 145 PHVHSANFTPDGRYLVVPDLGTDRIFLYDLDDGKL-TPAD--PAEVKPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYN 221 (346)
T ss_pred CccceeeeCCCCCEEEEeecCCceEEEEEcccCcc-cccc--ccccCCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEc
Confidence 7788899999 5555543 34799999985432 1111 11124556788999999999887755 47899999987
Q ss_pred Cccccceee-----------eccceEEEEEEeCCCEEEEeeC-CCeEEEEecCCCc--eeeeEeeeccccCeeEEEEecC
Q 047325 274 KQLSHGGVL-----------KGHKLAVLCLAAAGKLVFSGSA-DKTICVWRRDGAI--HTCLSVLTGHTGPVKCLAVEED 339 (368)
Q Consensus 274 ~~~~~~~~~-----------~~~~~~~~~~~~~~~~l~~~~~-dg~i~iw~~~~~~--~~~~~~~~~h~~~v~~l~~~~~ 339 (368)
........+ ......-+.+++||++|+++.. ...|-+|.++... ...+.....+....++..|++.
T Consensus 222 ~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNRg~dsI~~f~V~~~~g~L~~~~~~~teg~~PR~F~i~~~ 301 (346)
T COG2706 222 PAVGKFEELQTIDTLPEDFTGTNWAAAIHISPDGRFLYASNRGHDSIAVFSVDPDGGKLELVGITPTEGQFPRDFNINPS 301 (346)
T ss_pred CCCceEEEeeeeccCccccCCCCceeEEEECCCCCEEEEecCCCCeEEEEEEcCCCCEEEEEEEeccCCcCCccceeCCC
Confidence 631111111 1223344778899999998854 3478899886543 3334444445556899999999
Q ss_pred CeeeecCC
Q 047325 340 RDSSSSTS 347 (368)
Q Consensus 340 ~~~~~~~~ 347 (368)
+.+|..+.
T Consensus 302 g~~Liaa~ 309 (346)
T COG2706 302 GRFLIAAN 309 (346)
T ss_pred CCEEEEEc
Confidence 99766554
No 271
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=99.25 E-value=7.1e-08 Score=79.59 Aligned_cols=258 Identities=10% Similarity=0.010 Sum_probs=148.2
Q ss_pred CcEEEEcCCcc--eeccc-CCCCCeeEEEEeCCEEEEEeC----------CCeEEEEeecCCCccccccCCccccceeee
Q 047325 64 KNIRVWKNLKE--FCGFK-ASSGLVKAIVISGEKIFTGHQ----------DGKIRVWKISPKNQSVHKRAGTLPTLKDIF 130 (368)
Q Consensus 64 g~i~iw~~~~~--~~~~~-~~~~~v~~~~~~~~~l~s~~~----------dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~ 130 (368)
++|.+.|..+. +..+. +..... .+..+++.|+.+.. +..|.+||..+.+.......+..+...
T Consensus 27 ~~v~ViD~~~~~v~g~i~~G~~P~~-~~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~--- 102 (352)
T TIGR02658 27 TQVYTIDGEAGRVLGMTDGGFLPNP-VVASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFL--- 102 (352)
T ss_pred ceEEEEECCCCEEEEEEEccCCCce-eECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhh---
Confidence 78899987643 22222 222222 25555776666554 789999999998876555543221100
Q ss_pred eccCCCCceeEecccceeeeeecCCCEeEEEEcCCCCEEEEEe-C-CCcEEEEEccCCeEEEEeecCCCceEEEEeCCCC
Q 047325 131 KSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCGLLYTAS-W-DRTFKVWRISDSKCLESVSAHDDAVNSVVSSSEG 208 (368)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~-d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~ 208 (368)
.......++++|||+++++.. . +..|.+.|+.+++.+.++.-.... .-...+++.
T Consensus 103 ----------------------~~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~~~-~vy~t~e~~ 159 (352)
T TIGR02658 103 ----------------------VGTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVPDCY-HIFPTANDT 159 (352)
T ss_pred ----------------------ccCccceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeCCCCc-EEEEecCCc
Confidence 112334688999999999876 3 689999999999999988753321 112222222
Q ss_pred eEEEEcCCCeEEEEEcCCCCCCcccccceeecc-----ccccEEEEEEcC-CCCEEEEecCCCcEEEEeCCCcc----cc
Q 047325 209 LIFTGSADGTVKVWKREQHGKGTKHSLAQTLLK-----QECAVTALVVSS-SRSIVYCGSSDGLVNFWEREKQL----SH 278 (368)
Q Consensus 209 ~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~-----~~~~i~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~----~~ 278 (368)
..+-+.||......+...++.. ......+.. ...+ .|.+ ++++++...+ |.|.+.|+.... ..
T Consensus 160 -~~~~~~Dg~~~~v~~d~~g~~~-~~~~~vf~~~~~~v~~rP----~~~~~dg~~~~vs~e-G~V~~id~~~~~~~~~~~ 232 (352)
T TIGR02658 160 -FFMHCRDGSLAKVGYGTKGNPK-IKPTEVFHPEDEYLINHP----AYSNKSGRLVWPTYT-GKIFQIDLSSGDAKFLPA 232 (352)
T ss_pred -cEEEeecCceEEEEecCCCceE-EeeeeeecCCccccccCC----ceEcCCCcEEEEecC-CeEEEEecCCCcceecce
Confidence 2233445555554444332211 000011111 0111 3455 8888888777 999999964321 11
Q ss_pred ceee---------eccceEEEEEEeCCCEEEEee----------CCCeEEEEecCCCceeeeEeeeccccCeeEEEEecC
Q 047325 279 GGVL---------KGHKLAVLCLAAAGKLVFSGS----------ADKTICVWRRDGAIHTCLSVLTGHTGPVKCLAVEED 339 (368)
Q Consensus 279 ~~~~---------~~~~~~~~~~~~~~~~l~~~~----------~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~l~~~~~ 339 (368)
.... ........+++++++.+++.. ..+.|.++|..+. +.+..+.. ...+..|+++||
T Consensus 233 ~~~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~--kvi~~i~v-G~~~~~iavS~D 309 (352)
T TIGR02658 233 IEAFTEAEKADGWRPGGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKTG--KRLRKIEL-GHEIDSINVSQD 309 (352)
T ss_pred eeeccccccccccCCCcceeEEEcCCCCEEEEEecCCccccccCCCCEEEEEECCCC--eEEEEEeC-CCceeeEEECCC
Confidence 1111 111122378888988888743 1246888877665 66666652 458999999999
Q ss_pred Ce-eeecCC---cceEEEEEeeC
Q 047325 340 RD-SSSSTS---SCAQRWIVYSG 358 (368)
Q Consensus 340 ~~-~~~~~~---~~~~~w~l~sg 358 (368)
++ .+...+ +++.+....++
T Consensus 310 gkp~lyvtn~~s~~VsViD~~t~ 332 (352)
T TIGR02658 310 AKPLLYALSTGDKTLYIFDAETG 332 (352)
T ss_pred CCeEEEEeCCCCCcEEEEECcCC
Confidence 99 555433 33454444444
No 272
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=99.25 E-value=2.3e-10 Score=91.55 Aligned_cols=155 Identities=15% Similarity=0.187 Sum_probs=109.4
Q ss_pred EeEEEEcCCCCEEEEEeCCCcEEEEEccCCeE----EEEeecCCCceEEEEeCCCC-eEEEEcCCCeEEEEEcCCCCCCc
Q 047325 157 VSCMSLDQDCGLLYTASWDRTFKVWRISDSKC----LESVSAHDDAVNSVVSSSEG-LIFTGSADGTVKVWKREQHGKGT 231 (368)
Q Consensus 157 v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~----~~~~~~~~~~v~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~ 231 (368)
...+..++.+++++++..+....+++...... ....... ..-+++.+..+. ....+..-|.++-+|+-....
T Consensus 65 ~~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~v~-~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~~-- 141 (390)
T KOG3914|consen 65 PALVLTSDSGRLVAVATSSKQRAVFDYRENPKGAKLLDVSCVP-KRPTAISFIREDTSVLVADKAGDVYSFDILSADS-- 141 (390)
T ss_pred ccccccCCCceEEEEEeCCCceEEEEEecCCCcceeeeEeecc-cCcceeeeeeccceEEEEeecCCceeeeeecccc--
Confidence 34456677888999998888877887765432 2222222 222344443333 344444444444444332111
Q ss_pred ccccceeeccccccEEEEEEcCCCCEEEEecCCCcEEEEeCCCccccceeeeccceEEEEEEe-CCCEEEEeeCCCeEEE
Q 047325 232 KHSLAQTLLKQECAVTALVVSSSRSIVYCGSSDGLVNFWEREKQLSHGGVLKGHKLAVLCLAA-AGKLVFSGSADKTICV 310 (368)
Q Consensus 232 ~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~dg~i~i 310 (368)
.......+|-..++.++++||+++++++..|..|++-.+...........+|...|..++. ++..|++||.|++|++
T Consensus 142 --~~~~~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~~~~~LlS~sGD~tlr~ 219 (390)
T KOG3914|consen 142 --GRCEPILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLTDNYLLLSGSGDKTLRL 219 (390)
T ss_pred --cCcchhhhhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhhccccHhheeeeeeccCceeeecCCCCcEEE
Confidence 1345667899999999999999999999999999998888777777788899999988886 5677899999999999
Q ss_pred EecCCC
Q 047325 311 WRRDGA 316 (368)
Q Consensus 311 w~~~~~ 316 (368)
||+.++
T Consensus 220 Wd~~sg 225 (390)
T KOG3914|consen 220 WDITSG 225 (390)
T ss_pred EecccC
Confidence 999876
No 273
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=99.23 E-value=9.2e-08 Score=76.19 Aligned_cols=200 Identities=12% Similarity=0.143 Sum_probs=132.4
Q ss_pred cCCCEeEEEEcCCCCEEEEEeCC---CcEEEEEccC--CeEE--EEeecCCCceEEEEeCCCC-eEEEEcC-CCeEEEEE
Q 047325 153 HSDAVSCMSLDQDCGLLYTASWD---RTFKVWRISD--SKCL--ESVSAHDDAVNSVVSSSEG-LIFTGSA-DGTVKVWK 223 (368)
Q Consensus 153 ~~~~v~~~~~~~~~~~l~~~~~d---~~i~iwd~~~--~~~~--~~~~~~~~~v~~~~~~~~~-~l~~~~~-dg~i~i~d 223 (368)
.....+-++++|++++|.++..+ |.|..|.+.. |+.. ........+.+.+++++++ +++++.. .|.|.++-
T Consensus 38 ~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~yvsvd~~g~~vf~AnY~~g~v~v~p 117 (346)
T COG2706 38 ELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCYVSVDEDGRFVFVANYHSGSVSVYP 117 (346)
T ss_pred ccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeEEEECCCCCEEEEEEccCceEEEEE
Confidence 56678889999999999888654 6777776654 5432 2222233344789999999 6665554 68999999
Q ss_pred cCCCCCCcccccceeecccccc----------EEEEEEcCCCCEEEEecC-CCcEEEEeCCCccccc----eeeeccceE
Q 047325 224 REQHGKGTKHSLAQTLLKQECA----------VTALVVSSSRSIVYCGSS-DGLVNFWEREKQLSHG----GVLKGHKLA 288 (368)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~----------i~~~~~~~~~~~l~~~~~-dg~i~i~d~~~~~~~~----~~~~~~~~~ 288 (368)
++..+... .......|.++ +....+.|++++|++.+. ..+|.+|++..+.... ....+...+
T Consensus 118 ~~~dG~l~---~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y~~~dg~L~~~~~~~v~~G~GPR 194 (346)
T COG2706 118 LQADGSLQ---PVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIFLYDLDDGKLTPADPAEVKPGAGPR 194 (346)
T ss_pred cccCCccc---cceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEEEEEcccCccccccccccCCCCCcc
Confidence 97653311 12122233333 788999999999988753 3469999998654322 122334445
Q ss_pred EEEEEeCCCEEEEeeC-CCeEEEEecCCC--ceeeeEeeec------cccCeeEEEEecCCeeeecCC-cceEEEEE
Q 047325 289 VLCLAAAGKLVFSGSA-DKTICVWRRDGA--IHTCLSVLTG------HTGPVKCLAVEEDRDSSSSTS-SCAQRWIV 355 (368)
Q Consensus 289 ~~~~~~~~~~l~~~~~-dg~i~iw~~~~~--~~~~~~~~~~------h~~~v~~l~~~~~~~~~~~~~-~~~~~w~l 355 (368)
-+.|+|++++.+...+ +++|.+|.++.. ..+.++.+.. -.....+|..++||++|-.++ +...+|.+
T Consensus 195 Hi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNRg~dsI~~f 271 (346)
T COG2706 195 HIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISPDGRFLYASNRGHDSIAVF 271 (346)
T ss_pred eEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEECCCCCEEEEecCCCCeEEEE
Confidence 5889999999887776 899999998763 3334443321 123577899999999887665 33444433
No 274
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.21 E-value=5.1e-10 Score=86.75 Aligned_cols=251 Identities=14% Similarity=0.201 Sum_probs=149.9
Q ss_pred CCCCeeEEEEe--CCEEEEEeCCCeEEEEeecCCCccccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEe
Q 047325 81 SSGLVKAIVIS--GEKIFTGHQDGKIRVWKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVS 158 (368)
Q Consensus 81 ~~~~v~~~~~~--~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 158 (368)
....|+++.|. |.||++|...|+|.++.-+...................+. .+. -..-...|.
T Consensus 25 ead~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFD---------YLk------SleieEKin 89 (460)
T COG5170 25 EADKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFD---------YLK------SLEIEEKIN 89 (460)
T ss_pred ccceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchh---------hhh------hccHHHHhh
Confidence 45678999998 8999999999999999765443111111110100000000 000 001335678
Q ss_pred EEEEcCCC--CEEEEEeCCCcEEEEEccCCe------------------------------------------EEEEe-e
Q 047325 159 CMSLDQDC--GLLYTASWDRTFKVWRISDSK------------------------------------------CLESV-S 193 (368)
Q Consensus 159 ~~~~~~~~--~~l~~~~~d~~i~iwd~~~~~------------------------------------------~~~~~-~ 193 (368)
.+.|..++ ..++..+.|.+|++|.+.... +.+.. .
T Consensus 90 ~I~w~~~t~r~hFLlstNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaN 169 (460)
T COG5170 90 AIEWFDDTGRNHFLLSTNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYAN 169 (460)
T ss_pred heeeecCCCcceEEEecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccc
Confidence 88887643 467777889999999875420 00001 2
Q ss_pred cCCCceEEEEeCCCCeEEEEcCCCeEEEEEcCCCCCCccccc--ceeeccccccEEEEEEcCC-CCEEEEecCCCcEEEE
Q 047325 194 AHDDAVNSVVSSSEGLIFTGSADGTVKVWKREQHGKGTKHSL--AQTLLKQECAVTALVVSSS-RSIVYCGSSDGLVNFW 270 (368)
Q Consensus 194 ~~~~~v~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~--~~~~~~~~~~i~~~~~~~~-~~~l~~~~~dg~i~i~ 270 (368)
.|...|+++.+..+...+..+.|-.|.+|++..........- .........-|++..|+|. .+.+.-.+..|.|++-
T Consensus 170 aH~yhiNSiS~NsD~et~lSaDdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~ 249 (460)
T COG5170 170 AHPYHINSISFNSDKETLLSADDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLN 249 (460)
T ss_pred cceeEeeeeeecCchheeeeccceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEeh
Confidence 466678888998888555566788999999876543111000 0111122356888999994 4577778889999999
Q ss_pred eCCCcccccee-------e--------eccceEE--EEEEeCCCEEEEeeCCCeEEEEecCCCceeeeEeeeccc-----
Q 047325 271 EREKQLSHGGV-------L--------KGHKLAV--LCLAAAGKLVFSGSADKTICVWRRDGAIHTCLSVLTGHT----- 328 (368)
Q Consensus 271 d~~~~~~~~~~-------~--------~~~~~~~--~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~----- 328 (368)
|++........ . .+-...+ ..|+++|+++++-+. -+|+|||++.. ..++.++.-|.
T Consensus 250 DlRq~alcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdy-ltvkiwDvnm~-k~pikTi~~h~~l~~~ 327 (460)
T COG5170 250 DLRQSALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDY-LTVKIWDVNMA-KNPIKTIPMHCDLMDE 327 (460)
T ss_pred hhhhhhhccCchhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEecc-ceEEEEecccc-cCCceeechHHHHHHH
Confidence 99843221110 0 0111122 456678888887654 47999998765 35666665443
Q ss_pred -------cCe---eEEEEecCCeeeecCCc
Q 047325 329 -------GPV---KCLAVEEDRDSSSSTSS 348 (368)
Q Consensus 329 -------~~v---~~l~~~~~~~~~~~~~~ 348 (368)
..| -.+.|+.|...+.+++.
T Consensus 328 l~d~YEnDaifdkFeisfSgd~~~v~sgsy 357 (460)
T COG5170 328 LNDVYENDAIFDKFEISFSGDDKHVLSGSY 357 (460)
T ss_pred HHhhhhccceeeeEEEEecCCccccccccc
Confidence 223 35778888887666653
No 275
>PRK04043 tolB translocation protein TolB; Provisional
Probab=99.21 E-value=2.2e-08 Score=86.02 Aligned_cols=178 Identities=10% Similarity=0.032 Sum_probs=111.2
Q ss_pred CEeEEEEcCCCCE-EEEEeC---CCcEEEEEccCCeEEEEeecCCCceEEEEeCCCC-eE-EEEcCC--CeEEEEEcCCC
Q 047325 156 AVSCMSLDQDCGL-LYTASW---DRTFKVWRISDSKCLESVSAHDDAVNSVVSSSEG-LI-FTGSAD--GTVKVWKREQH 227 (368)
Q Consensus 156 ~v~~~~~~~~~~~-l~~~~~---d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l-~~~~~d--g~i~i~d~~~~ 227 (368)
......|+||++. ++..+. +..|.++|+.+++...... ..+......|+||| .+ ++.+.+ ..|.++|+..+
T Consensus 189 ~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~-~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~g 267 (419)
T PRK04043 189 LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIAS-SQGMLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTNTK 267 (419)
T ss_pred CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEec-CCCcEEeeEECCCCCEEEEEEccCCCcEEEEEECCCC
Confidence 6678899999984 554443 3569999998887655443 44556677899999 44 444433 56778887654
Q ss_pred CCCcccccceeeccccccEEEEEEcCCCCEEEEecC-CC--cEEEEeCCCccccceeeeccceEEEEEEeCCCEEEEeeC
Q 047325 228 GKGTKHSLAQTLLKQECAVTALVVSSSRSIVYCGSS-DG--LVNFWEREKQLSHGGVLKGHKLAVLCLAAAGKLVFSGSA 304 (368)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-dg--~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 304 (368)
. ...+...........|+|||+.|+..+. .+ .|++.|+.++........+.. ...++|||+.|+....
T Consensus 268 ~-------~~~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~~g~~--~~~~SPDG~~Ia~~~~ 338 (419)
T PRK04043 268 T-------LTQITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVFHGKN--NSSVSTYKNYIVYSSR 338 (419)
T ss_pred c-------EEEcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeCccCCCc--CceECCCCCEEEEEEc
Confidence 2 2222223322345579999987776553 33 578888876554322222222 2478999998876654
Q ss_pred C---------CeEEEEecCCCceeeeEeeeccccCeeEEEEecCCeeeecCC
Q 047325 305 D---------KTICVWRRDGAIHTCLSVLTGHTGPVKCLAVEEDRDSSSSTS 347 (368)
Q Consensus 305 d---------g~i~iw~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~ 347 (368)
. ..|.+.|++++..+.+. .. .......|+|||+.++...
T Consensus 339 ~~~~~~~~~~~~I~v~d~~~g~~~~LT---~~-~~~~~p~~SPDG~~I~f~~ 386 (419)
T PRK04043 339 ETNNEFGKNTFNLYLISTNSDYIRRLT---AN-GVNQFPRFSSDGGSIMFIK 386 (419)
T ss_pred CCCcccCCCCcEEEEEECCCCCeEECC---CC-CCcCCeEECCCCCEEEEEE
Confidence 3 26777787766433332 22 2333588999999876554
No 276
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=99.19 E-value=1.1e-08 Score=77.76 Aligned_cols=188 Identities=12% Similarity=0.062 Sum_probs=130.5
Q ss_pred EEEEccCCCcEEEEcCCcc---eecccCCCCCeeEE---EEeCCEEEEEeCCCeEEEEeecCCCccccccCCccccceee
Q 047325 56 LLYTGSDSKNIRVWKNLKE---FCGFKASSGLVKAI---VISGEKIFTGHQDGKIRVWKISPKNQSVHKRAGTLPTLKDI 129 (368)
Q Consensus 56 ~l~s~~~dg~i~iw~~~~~---~~~~~~~~~~v~~~---~~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~ 129 (368)
+||.|+.-|...+|...+. .+....|...|+-+ +-....+..++.|.++++.+++.+......
T Consensus 86 ~la~gG~~g~fd~~~~~tn~~h~~~cd~snn~v~~~~r~cd~~~~~~i~sndht~k~~~~~~~s~~~~~----------- 154 (344)
T KOG4532|consen 86 TLADGGASGQFDLFACNTNDGHLYQCDVSNNDVTLVKRYCDLKFPLNIASNDHTGKTMVVSGDSNKFAV----------- 154 (344)
T ss_pred EEEeccccceeeeecccCcccceeeecccccchhhhhhhcccccceeeccCCcceeEEEEecCccccee-----------
Confidence 8999999999999987633 22223343333222 222446778899999999998866432211
Q ss_pred eeccCCCCceeEecccceeeeeecCC--CEeEEEEcCCCCEEEEEeCCCcEEEEEccCC-eE-EE-EeecCCCceEEEEe
Q 047325 130 FKSSIKPSNYIEVRRHRTALWIRHSD--AVSCMSLDQDCGLLYTASWDRTFKVWRISDS-KC-LE-SVSAHDDAVNSVVS 204 (368)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~-~~-~~-~~~~~~~~v~~~~~ 204 (368)
|.. .+.+++++++++++++.+....|..|.+... +. +. ........-.+..|
T Consensus 155 -----------------------h~~~~~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~ 211 (344)
T KOG4532|consen 155 -----------------------HNQNLTQNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSF 211 (344)
T ss_pred -----------------------eccccceeeeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEecccCCCceeeee
Confidence 333 2788999999999999999999999988643 22 22 22223344567788
Q ss_pred CCCC-eEEEEcCCCeEEEEEcCCCCCCcccccceeeccccccEEEEEEcCCCC--EEEEecCCCcEEEEeCCCcccc
Q 047325 205 SSEG-LIFTGSADGTVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSSSRS--IVYCGSSDGLVNFWEREKQLSH 278 (368)
Q Consensus 205 ~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~--~l~~~~~dg~i~i~d~~~~~~~ 278 (368)
+... .+|++..||++.|||+|........ .......|.+.++.+.|++-|. +|+..-.-+.+.+.|+++....
T Consensus 212 s~~~~~FAv~~Qdg~~~I~DVR~~~tpm~~-~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~~ 287 (344)
T KOG4532|consen 212 SENDLQFAVVFQDGTCAIYDVRNMATPMAE-ISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYVNH 287 (344)
T ss_pred ccCcceEEEEecCCcEEEEEecccccchhh-hcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccCcee
Confidence 8877 9999999999999999976542222 2233445889999999998554 5555556678999999976544
No 277
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=99.19 E-value=2.1e-08 Score=82.49 Aligned_cols=168 Identities=11% Similarity=0.070 Sum_probs=124.0
Q ss_pred cCCEEEEccCCCcEEEEcCCcceecccCCCCCeeEEEEe--CCEEEEEeCCC-eEEEEeecCCCccccccCCccccceee
Q 047325 53 SKDLLYTGSDSKNIRVWKNLKEFCGFKASSGLVKAIVIS--GEKIFTGHQDG-KIRVWKISPKNQSVHKRAGTLPTLKDI 129 (368)
Q Consensus 53 ~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg-~i~vw~~~~~~~~~~~~~~~~~~~~~~ 129 (368)
+|++++..|. |...|.+........-+|.+.|.-..+. ++-++.|..|| .+-|+|.++++.....
T Consensus 331 ~Gd~ia~VSR-GkaFi~~~~~~~~iqv~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~kr~e----------- 398 (668)
T COG4946 331 NGDYIALVSR-GKAFIMRPWDGYSIQVGKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEVKRIE----------- 398 (668)
T ss_pred CCcEEEEEec-CcEEEECCCCCeeEEcCCCCceEEEEEccCCcceEEeccCCceEEEEecCCceEEEee-----------
Confidence 4667777765 6677777665555555677778777776 67899999999 8999999988632221
Q ss_pred eeccCCCCceeEecccceeeeeecCCCEeEEEEcCCCCEEEEEeCCCcEEEEEccCCeEEEEeecCCCceEEEEeCCCC-
Q 047325 130 FKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCGLLYTASWDRTFKVWRISDSKCLESVSAHDDAVNSVVSSSEG- 208 (368)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~- 208 (368)
+.-+.|.++..+++|++++++.....|.+.|+.++.....-+...+-|+.+.|+|++
T Consensus 399 ----------------------~~lg~I~av~vs~dGK~~vvaNdr~el~vididngnv~~idkS~~~lItdf~~~~nsr 456 (668)
T COG4946 399 ----------------------KDLGNIEAVKVSPDGKKVVVANDRFELWVIDIDNGNVRLIDKSEYGLITDFDWHPNSR 456 (668)
T ss_pred ----------------------CCccceEEEEEcCCCcEEEEEcCceEEEEEEecCCCeeEecccccceeEEEEEcCCce
Confidence 245678999999999999999988999999999998776666677889999999999
Q ss_pred eEEEEcCCC----eEEEEEcCCCCCCcccccceeeccccccEEEEEEcCCCCEEEEe
Q 047325 209 LIFTGSADG----TVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSSSRSIVYCG 261 (368)
Q Consensus 209 ~l~~~~~dg----~i~i~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~ 261 (368)
.++-+--+| .|+++|+...+ ........+.=.+-+|.|++++|.--
T Consensus 457 ~iAYafP~gy~tq~Iklydm~~~K-------iy~vTT~ta~DfsPaFD~d~ryLYfL 506 (668)
T COG4946 457 WIAYAFPEGYYTQSIKLYDMDGGK-------IYDVTTPTAYDFSPAFDPDGRYLYFL 506 (668)
T ss_pred eEEEecCcceeeeeEEEEecCCCe-------EEEecCCcccccCcccCCCCcEEEEE
Confidence 777665554 68999997642 22222233333456788888876543
No 278
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.19 E-value=1.3e-10 Score=100.07 Aligned_cols=223 Identities=17% Similarity=0.184 Sum_probs=154.4
Q ss_pred EEEEccCCCcEEEEcCCcc-----eecccCCCCCeeEEEEe---CCEEEEEeCCCeEEEEeecCCCccccccCCccccce
Q 047325 56 LLYTGSDSKNIRVWKNLKE-----FCGFKASSGLVKAIVIS---GEKIFTGHQDGKIRVWKISPKNQSVHKRAGTLPTLK 127 (368)
Q Consensus 56 ~l~s~~~dg~i~iw~~~~~-----~~~~~~~~~~v~~~~~~---~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~ 127 (368)
.+++.+... -.+|++... ...+.+|...|+.+.|+ ...+++++.|-.+..||++..........
T Consensus 84 wiVsts~qk-aiiwnlA~ss~~aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~------- 155 (1081)
T KOG0309|consen 84 WIVSTSNQK-AIIWNLAKSSSNAIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTS------- 155 (1081)
T ss_pred eEEecCcch-hhhhhhhcCCccceEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCcceeeee-------
Confidence 455555444 458987632 23467899999999998 66899999999999999987653222111
Q ss_pred eeeeccCCCCceeEecccceeeeeecCCCEeEEEEcCCCCEEEEEeCCCcEEEEEccCC-eEEEEeecCCCceEEEEeCC
Q 047325 128 DIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCGLLYTASWDRTFKVWRISDS-KCLESVSAHDDAVNSVVSSS 206 (368)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~-~~~~~~~~~~~~v~~~~~~~ 206 (368)
.-...-..++|+-....+.+.+....|.+||++.| .++..+++|...|+.++|..
T Consensus 156 ------------------------~w~s~asqVkwnyk~p~vlasshg~~i~vwd~r~gs~pl~s~K~~vs~vn~~~fnr 211 (1081)
T KOG0309|consen 156 ------------------------SWRSAASQVKWNYKDPNVLASSHGNDIFVWDLRKGSTPLCSLKGHVSSVNSIDFNR 211 (1081)
T ss_pred ------------------------cccccCceeeecccCcchhhhccCCceEEEeccCCCcceEEecccceeeehHHHhh
Confidence 12344567888876566666777789999999875 57888999999999999876
Q ss_pred CC--eEEEEcCCCeEEEEEcCCCCCCcccccceeeccccccEEEEEEcCCCC--EEEEecCCCcEEEEe---------CC
Q 047325 207 EG--LIFTGSADGTVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSSSRS--IVYCGSSDGLVNFWE---------RE 273 (368)
Q Consensus 207 ~~--~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~--~l~~~~~dg~i~i~d---------~~ 273 (368)
-- .+.+.+.|++|+.||...... ..........+|..-++.|-|. ++.-.-.+..+.+++ ..
T Consensus 212 ~~~s~~~s~~~d~tvkfw~y~kSt~-----e~~~~vtt~~piw~~r~~Pfg~g~~~mp~~G~n~v~~~~c~n~d~e~n~~ 286 (1081)
T KOG0309|consen 212 FKYSEIMSSSNDGTVKFWDYSKSTT-----ESKRTVTTNFPIWRGRYLPFGEGYCIMPMVGGNMVPQLRCENSDLEWNVF 286 (1081)
T ss_pred hhhhhhcccCCCCceeeeccccccc-----ccceeccccCcceeccccccCceeEeccccCCeeeeeccccchhhhhccc
Confidence 54 899999999999999975533 1222233445666666666443 222222222344443 33
Q ss_pred CccccceeeeccceEEEEEEeC------------CCEEEEeeCCCeEEEEecCC
Q 047325 274 KQLSHGGVLKGHKLAVLCLAAA------------GKLVFSGSADKTICVWRRDG 315 (368)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~------------~~~l~~~~~dg~i~iw~~~~ 315 (368)
+...+...+.+|...|..|-+- .-.|++-+.|..+++|.++.
T Consensus 287 ~~~~pVh~F~GH~D~V~eFlWR~r~e~~~d~d~rdfQLVTWSkD~~lrlWpI~~ 340 (1081)
T KOG0309|consen 287 DLNTPVHTFVGHDDVVLEFLWRKRKECDGDYDSRDFQLVTWSKDQTLRLWPIDS 340 (1081)
T ss_pred cCCcceeeecCcchHHHHHhhhhcccccCCCCccceeEEEeecCCceEeeeccH
Confidence 4455667888999888776541 12699999999999998754
No 279
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.17 E-value=2.3e-07 Score=88.72 Aligned_cols=247 Identities=10% Similarity=0.057 Sum_probs=144.2
Q ss_pred CCEEEEccCCCcEEEEcCCcceecccC---------------CCCCeeEEEEe--CCEEEEEe-CCCeEEEEeecCCCcc
Q 047325 54 KDLLYTGSDSKNIRVWKNLKEFCGFKA---------------SSGLVKAIVIS--GEKIFTGH-QDGKIRVWKISPKNQS 115 (368)
Q Consensus 54 ~~~l~s~~~dg~i~iw~~~~~~~~~~~---------------~~~~v~~~~~~--~~~l~s~~-~dg~i~vw~~~~~~~~ 115 (368)
++++++-+.++.|+++|.........+ .-.....++++ ++.|+.+. ..+.|+++|+.++...
T Consensus 580 g~lyVaDs~n~rI~v~d~~G~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaDt~n~~Ir~id~~~~~V~ 659 (1057)
T PLN02919 580 NRLFISDSNHNRIVVTDLDGNFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVADTENHALREIDFVNETVR 659 (1057)
T ss_pred CeEEEEECCCCeEEEEeCCCCEEEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEeCCCceEEEEecCCCEEE
Confidence 447777788889999997654322111 11234677776 56665554 4577999988765421
Q ss_pred ccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcC-CCCEEEEEeCCCcEEEEEccCCeEEEEeec
Q 047325 116 VHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQ-DCGLLYTASWDRTFKVWRISDSKCLESVSA 194 (368)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~ 194 (368)
.....+.... ...... ..... .-..-..++++| ++..+++...++.|++||..++... .+.+
T Consensus 660 tlag~G~~g~-------~~~gg~-----~~~~~----~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~-~~~G 722 (1057)
T PLN02919 660 TLAGNGTKGS-------DYQGGK-----KGTSQ----VLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTR-VFSG 722 (1057)
T ss_pred EEeccCcccC-------CCCCCh-----hhhHh----hcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeEE-EEec
Confidence 1110000000 000000 00000 012235789999 5556667677889999999876543 2211
Q ss_pred C---------------CCceEEEEeCCCC--eEEEEcCCCeEEEEEcCCCCCCccc-------ccceeec--------cc
Q 047325 195 H---------------DDAVNSVVSSSEG--LIFTGSADGTVKVWKREQHGKGTKH-------SLAQTLL--------KQ 242 (368)
Q Consensus 195 ~---------------~~~v~~~~~~~~~--~l~~~~~dg~i~i~d~~~~~~~~~~-------~~~~~~~--------~~ 242 (368)
. -.....++++|++ .+++-..++.|++||++.+...... .....+. ..
T Consensus 723 ~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~ 802 (1057)
T PLN02919 723 DGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVL 802 (1057)
T ss_pred CCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhh
Confidence 1 1234578999987 4556666899999998754310000 0000000 01
Q ss_pred cccEEEEEEcCCCCEEEEecCCCcEEEEeCCCccccceeeec--------------cceEEEEEEeCCCEEEEeeCCCeE
Q 047325 243 ECAVTALVVSSSRSIVYCGSSDGLVNFWEREKQLSHGGVLKG--------------HKLAVLCLAAAGKLVFSGSADKTI 308 (368)
Q Consensus 243 ~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~l~~~~~dg~i 308 (368)
-.....++++++|+++++-..++.|++||..++......-.+ ....-++++++|+++++-+.++.|
T Consensus 803 l~~P~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~I 882 (1057)
T PLN02919 803 LQHPLGVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTNNSLI 882 (1057)
T ss_pred ccCCceeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEECCCCEE
Confidence 113468899999999999999999999998765433111000 112236778899998988899999
Q ss_pred EEEecCCCc
Q 047325 309 CVWRRDGAI 317 (368)
Q Consensus 309 ~iw~~~~~~ 317 (368)
++||+++..
T Consensus 883 rvid~~~~~ 891 (1057)
T PLN02919 883 RYLDLNKGE 891 (1057)
T ss_pred EEEECCCCc
Confidence 999997753
No 280
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.17 E-value=1.3e-08 Score=88.06 Aligned_cols=185 Identities=12% Similarity=-0.009 Sum_probs=105.6
Q ss_pred CCCEeEEEEcCCCCEE---EEEeCCC--cEEEEEccCCeEEEEeecCCCceEEEEeCCCC-eEEEEc-CCC----eEEEE
Q 047325 154 SDAVSCMSLDQDCGLL---YTASWDR--TFKVWRISDSKCLESVSAHDDAVNSVVSSSEG-LIFTGS-ADG----TVKVW 222 (368)
Q Consensus 154 ~~~v~~~~~~~~~~~l---~~~~~d~--~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~-~dg----~i~i~ 222 (368)
...+..-.|+|||+.+ ++...+| .|.+.++.+++.... ....+......|+||| .|+..+ .+| .+..|
T Consensus 184 ~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~l-t~~~g~~~~p~wSPDG~~Laf~s~~~g~~di~~~~~ 262 (428)
T PRK01029 184 HSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKKI-LALQGNQLMPTFSPRKKLLAFISDRYGNPDLFIQSF 262 (428)
T ss_pred CCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceEe-ecCCCCccceEECCCCCEEEEEECCCCCcceeEEEe
Confidence 3445667999998742 2444443 688889887764333 2234445567999999 555433 223 34446
Q ss_pred EcCCCCCCcccccceeeccccccEEEEEEcCCCCEEEEec-CCCcEEEE--eCCCccccceeeecc--ceEEEEEEeCCC
Q 047325 223 KREQHGKGTKHSLAQTLLKQECAVTALVVSSSRSIVYCGS-SDGLVNFW--EREKQLSHGGVLKGH--KLAVLCLAAAGK 297 (368)
Q Consensus 223 d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~i~i~--d~~~~~~~~~~~~~~--~~~~~~~~~~~~ 297 (368)
++.....+ ................+|+|||+.|+..+ .+|...+| ++.........+..+ ......++|||+
T Consensus 263 ~~~~g~~g---~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~lt~~~~~~~~p~wSPDG~ 339 (428)
T PRK01029 263 SLETGAIG---KPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPRLLTKKYRNSSCPAWSPDGK 339 (428)
T ss_pred ecccCCCC---cceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECcccccceEEeccCCCCccceeECCCCC
Confidence 66542110 11112222223345679999999877655 45654444 443211111122222 223467899999
Q ss_pred EEEEeeCC---CeEEEEecCCCceeeeEeeeccccCeeEEEEecCCeeeec
Q 047325 298 LVFSGSAD---KTICVWRRDGAIHTCLSVLTGHTGPVKCLAVEEDRDSSSS 345 (368)
Q Consensus 298 ~l~~~~~d---g~i~iw~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~ 345 (368)
.|+..+.+ ..|.+||+.++.... +......+....|+|||+.++.
T Consensus 340 ~Laf~~~~~g~~~I~v~dl~~g~~~~---Lt~~~~~~~~p~wSpDG~~L~f 387 (428)
T PRK01029 340 KIAFCSVIKGVRQICVYDLATGRDYQ---LTTSPENKESPSWAIDSLHLVY 387 (428)
T ss_pred EEEEEEcCCCCcEEEEEECCCCCeEE---ccCCCCCccceEECCCCCEEEE
Confidence 88866543 468999988764332 2222345678999999987663
No 281
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=99.14 E-value=2e-08 Score=87.50 Aligned_cols=315 Identities=15% Similarity=0.118 Sum_probs=194.0
Q ss_pred cccccCCCceeeeccCcCCcEEEEEecC----------C----EEEEccCCCcEEEEcCCc--ceecccCCCCCeeEEEE
Q 047325 27 FEENLPQNGLIGSLVREEGHIYSLAASK----------D----LLYTGSDSKNIRVWKNLK--EFCGFKASSGLVKAIVI 90 (368)
Q Consensus 27 ~~~~~~~~~~~~~~~~h~~~i~~~~~~~----------~----~l~s~~~dg~i~iw~~~~--~~~~~~~~~~~v~~~~~ 90 (368)
+.-+....+.+.++.-|...|+.+.|.+ . +||++...|.|.+||... .+..+..|..++..++|
T Consensus 38 ~VVDs~s~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~d~~~~s~~~~l~~~~~~~qdl~W 117 (1062)
T KOG1912|consen 38 SVVDSRSLQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILVDFVLASVINWLSHSNDSVQDLCW 117 (1062)
T ss_pred EEEehhhhhhhhccccCccceeEEEeccCCCchhccCccccceeEEeccccCcEEEEEehhhhhhhhhcCCCcchhheee
Confidence 3445667788899999999999999842 1 688999999999999764 46678889999999998
Q ss_pred e------CCEEEEEeCCCeEEEEeecCCCccccccCCccccceeeeeccCCCCceeEe-------------------ccc
Q 047325 91 S------GEKIFTGHQDGKIRVWKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEV-------------------RRH 145 (368)
Q Consensus 91 ~------~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------~~~ 145 (368)
- .+.|++-....++.+|+..+++............. .+-...+++..+..+ ..+
T Consensus 118 ~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~ys~~iLs-~f~~DPfd~rh~~~l~s~g~vl~~~~l~~sep~~pgk 196 (1062)
T KOG1912|consen 118 VPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKYDYSHEILS-CFRVDPFDSRHFCVLGSKGFVLSCKDLGLSEPDVPGK 196 (1062)
T ss_pred eeccCcchheeEEecCCcEEEEEEccCCceeeccccCCccee-eeeeCCCCcceEEEEccCceEEEEeccCCCCCCCCce
Confidence 5 35788888888999999999987665554332211 000011111111000 000
Q ss_pred ceeeeeecCC----------------C---------EeEEEEcCCCCEEEEEeCCCcEEEEEccCCeEEEEeecCCCceE
Q 047325 146 RTALWIRHSD----------------A---------VSCMSLDQDCGLLYTASWDRTFKVWRISDSKCLESVSAHDDAVN 200 (368)
Q Consensus 146 ~~~~~~~~~~----------------~---------v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~ 200 (368)
..+.-..|.+ . ...++|+|.-+.++-......+.++|++-..++....-..+.+.
T Consensus 197 ~~qI~sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~faf~p~~rn~lfi~~prellv~dle~~~~l~vvpier~~ak 276 (1062)
T KOG1912|consen 197 EFQITSDHSDLAHLERETATGNSTTSTPASAYFITYCAQFAFSPHWRNILFITFPRELLVFDLEYECCLAVVPIERGGAK 276 (1062)
T ss_pred eEEEecCccchhhhhhhhhccccccCCCcchhHHHHHHhhhcChhhhceEEEEeccceEEEcchhhceeEEEEeccCCcc
Confidence 1111111111 0 11245677555444445567899999998888888877777777
Q ss_pred EEEeCCCC---eEEEEcCCCeEEEEEcCCCCCCcccccceee-ccccccEEE-----------EEEcCC-CCEEEEecCC
Q 047325 201 SVVSSSEG---LIFTGSADGTVKVWKREQHGKGTKHSLAQTL-LKQECAVTA-----------LVVSSS-RSIVYCGSSD 264 (368)
Q Consensus 201 ~~~~~~~~---~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~-~~~~~~i~~-----------~~~~~~-~~~l~~~~~d 264 (368)
-+.+.|+. .|++.-.||.+.+|-.+........ +...+ ......+.+ ....|. .+.++.--.+
T Consensus 277 fv~vlP~~~rd~LfclH~nG~ltirvrk~~~~~f~~-~~~~l~~dl~~Q~~~vr~m~~~rp~~~~~cPs~~sa~avl~s~ 355 (1062)
T KOG1912|consen 277 FVDVLPDPRRDALFCLHSNGRLTIRVRKEEPTEFKK-PNASLSMDLGEQVHVVRPMEEFRPVIGASCPSTPSALAVLYSS 355 (1062)
T ss_pred eeEeccCCCcceEEEEecCCeEEEEEeeccCccccc-cchhhccccccceEEEeechhcccceeecCCCChhhhhhhhhc
Confidence 88888876 8999999999999987653221111 00000 000111222 222232 3344444456
Q ss_pred CcEEEEeCCCccccce------------------------------eeeccceEEEEEE-------------eC------
Q 047325 265 GLVNFWEREKQLSHGG------------------------------VLKGHKLAVLCLA-------------AA------ 295 (368)
Q Consensus 265 g~i~i~d~~~~~~~~~------------------------------~~~~~~~~~~~~~-------------~~------ 295 (368)
|.+.+|.+++++.... ...+|.....+.. |.
T Consensus 356 g~~~~w~l~~~ri~~~~~s~~iel~~pf~f~~~~~~v~k~~l~~LS~dg~h~sGs~~~~~~p~p~~t~~~~~p~~n~~~~ 435 (1062)
T KOG1912|consen 356 GDSTFWQLSNGRIHLDYRSSSIELVLPFDFNLSTKLVGKTSLISLSDDGSHSSGSTCVRMRPMPELTKVENDPGGNTPAG 435 (1062)
T ss_pred chhHHHhhhcCCcCcccccccccccccccccCceeehhhccccchhhcCCCCCCceeeecccCcccceeecCCCCCccce
Confidence 7777787764321110 0012222221111 11
Q ss_pred -CCEEEEeeCCCeEEEEecCCCceeeeEeeeccccCeeEEEEecCCeeeec
Q 047325 296 -GKLVFSGSADKTICVWRRDGAIHTCLSVLTGHTGPVKCLAVEEDRDSSSS 345 (368)
Q Consensus 296 -~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~ 345 (368)
-.+++.|...|+|.++|+.++ ..-..+..|...|.++.|-....++..
T Consensus 436 ~~pLvAvGT~sGTV~vvdvst~--~v~~~fsvht~~VkgleW~g~sslvSf 484 (1062)
T KOG1912|consen 436 TVPLVAVGTNSGTVDVVDVSTN--AVAASFSVHTSLVKGLEWLGNSSLVSF 484 (1062)
T ss_pred eeeeEEeecCCceEEEEEecch--hhhhhhcccccceeeeeeccceeEEEe
Confidence 136889999999999999887 566778889999999999888775543
No 282
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=99.14 E-value=4e-08 Score=84.69 Aligned_cols=231 Identities=9% Similarity=0.039 Sum_probs=129.3
Q ss_pred CCEEEEccCCCcEEEEcCCccee--cccCCCCCeeEEEEeCCEEEEEeCCCeEEEEeecCCCccccccCCccccceeeee
Q 047325 54 KDLLYTGSDSKNIRVWKNLKEFC--GFKASSGLVKAIVISGEKIFTGHQDGKIRVWKISPKNQSVHKRAGTLPTLKDIFK 131 (368)
Q Consensus 54 ~~~l~s~~~dg~i~iw~~~~~~~--~~~~~~~~v~~~~~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~ 131 (368)
++.++.++.+|.+..+|..+... ..........+....++.++.+..+|.+..+|.++++............
T Consensus 120 ~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~ssP~v~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~------ 193 (394)
T PRK11138 120 GGKVYIGSEKGQVYALNAEDGEVAWQTKVAGEALSRPVVSDGLVLVHTSNGMLQALNESDGAVKWTVNLDVPSL------ 193 (394)
T ss_pred CCEEEEEcCCCEEEEEECCCCCCcccccCCCceecCCEEECCEEEEECCCCEEEEEEccCCCEeeeecCCCCcc------
Confidence 33556666778888888654322 2222211112223346777778888888888888887655443321000
Q ss_pred ccCCCCceeEecccceeeeeecCCCEeEEEEcCCCCEEEEEeCCCcEEEEEccCCeEEEEeecCCC-------ceEEEEe
Q 047325 132 SSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCGLLYTASWDRTFKVWRISDSKCLESVSAHDD-------AVNSVVS 204 (368)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~-------~v~~~~~ 204 (368)
...+...++ . .+..++.++.+|.+..+|..+|+.+-..+.... ....+..
T Consensus 194 -----------------~~~~~~sP~----v--~~~~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~ 250 (394)
T PRK11138 194 -----------------TLRGESAPA----T--AFGGAIVGGDNGRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDT 250 (394)
T ss_pred -----------------cccCCCCCE----E--ECCEEEEEcCCCEEEEEEccCChhhheeccccCCCccchhcccccCC
Confidence 000011111 1 123566777889999999999887655431110 0111111
Q ss_pred CC---CCeEEEEcCCCeEEEEEcCCCCCCcccccceeeccccccEEEEEEcCCCCEEEEecCCCcEEEEeCCCcccccee
Q 047325 205 SS---EGLIFTGSADGTVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSSSRSIVYCGSSDGLVNFWEREKQLSHGGV 281 (368)
Q Consensus 205 ~~---~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~ 281 (368)
+| ++.++.++.+|.+..+|..++....... . .....+.. .+..++.++.+|.+..+|.++++.....
T Consensus 251 sP~v~~~~vy~~~~~g~l~ald~~tG~~~W~~~----~----~~~~~~~~--~~~~vy~~~~~g~l~ald~~tG~~~W~~ 320 (394)
T PRK11138 251 TPVVVGGVVYALAYNGNLVALDLRSGQIVWKRE----Y----GSVNDFAV--DGGRIYLVDQNDRVYALDTRGGVELWSQ 320 (394)
T ss_pred CcEEECCEEEEEEcCCeEEEEECCCCCEEEeec----C----CCccCcEE--ECCEEEEEcCCCeEEEEECCCCcEEEcc
Confidence 22 4577778889999999998764311111 1 11111222 4567778888999999999887654322
Q ss_pred eeccceEEEEEEeCCCEEEEeeCCCeEEEEecCCCceeeeEeee
Q 047325 282 LKGHKLAVLCLAAAGKLVFSGSADKTICVWRRDGAIHTCLSVLT 325 (368)
Q Consensus 282 ~~~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~ 325 (368)
.........+....+.+|+.++.||.|++.|..++ +.+...+
T Consensus 321 ~~~~~~~~~sp~v~~g~l~v~~~~G~l~~ld~~tG--~~~~~~~ 362 (394)
T PRK11138 321 SDLLHRLLTAPVLYNGYLVVGDSEGYLHWINREDG--RFVAQQK 362 (394)
T ss_pred cccCCCcccCCEEECCEEEEEeCCCEEEEEECCCC--CEEEEEE
Confidence 11100111111224677888999999999988776 5555544
No 283
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.13 E-value=1.4e-07 Score=90.24 Aligned_cols=198 Identities=10% Similarity=0.050 Sum_probs=118.7
Q ss_pred CEeEEEEcCCCCEEEEEeC-CCcEEEEEccCCeEEEEeecC-----------------CCceEEEEeCC-CC-eEEEEcC
Q 047325 156 AVSCMSLDQDCGLLYTASW-DRTFKVWRISDSKCLESVSAH-----------------DDAVNSVVSSS-EG-LIFTGSA 215 (368)
Q Consensus 156 ~v~~~~~~~~~~~l~~~~~-d~~i~iwd~~~~~~~~~~~~~-----------------~~~v~~~~~~~-~~-~l~~~~~ 215 (368)
....++++++++.|+++.. ++.|+.+|+.++.. .++.+. -.....++++| ++ .+++...
T Consensus 625 ~P~GIavd~~gn~LYVaDt~n~~Ir~id~~~~~V-~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~ 703 (1057)
T PLN02919 625 RPQGLAYNAKKNLLYVADTENHALREIDFVNETV-RTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAG 703 (1057)
T ss_pred CCcEEEEeCCCCEEEEEeCCCceEEEEecCCCEE-EEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECC
Confidence 4578999998887666654 56799999877653 333210 11235789998 45 6667778
Q ss_pred CCeEEEEEcCCCCCCccc--ccceeec------cccccEEEEEEcCCCC-EEEEecCCCcEEEEeCCCcccccee-----
Q 047325 216 DGTVKVWKREQHGKGTKH--SLAQTLL------KQECAVTALVVSSSRS-IVYCGSSDGLVNFWEREKQLSHGGV----- 281 (368)
Q Consensus 216 dg~i~i~d~~~~~~~~~~--~~~~~~~------~~~~~i~~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~----- 281 (368)
++.|++||...+...... ....... ..-.....++++|+++ ++++-..++.|++||+.++......
T Consensus 704 ~~~I~v~d~~~g~v~~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~ 783 (1057)
T PLN02919 704 QHQIWEYNISDGVTRVFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPT 783 (1057)
T ss_pred CCeEEEEECCCCeEEEEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccc
Confidence 899999998654210000 0000000 0113456799999988 4455566789999998764321000
Q ss_pred -------e-----------eccceEEEEEEeCCCEEEEeeCCCeEEEEecCCCceeeeEe-----------eeccccCee
Q 047325 282 -------L-----------KGHKLAVLCLAAAGKLVFSGSADKTICVWRRDGAIHTCLSV-----------LTGHTGPVK 332 (368)
Q Consensus 282 -------~-----------~~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~-----------~~~h~~~v~ 332 (368)
+ ..++ .-++++++|.++++-..+++|++||.++.....+.. ..+.-....
T Consensus 784 ~~~~l~~fG~~dG~g~~~~l~~P-~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~ 862 (1057)
T PLN02919 784 FSDNLFKFGDHDGVGSEVLLQHP-LGVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPA 862 (1057)
T ss_pred cCcccccccCCCCchhhhhccCC-ceeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCce
Confidence 0 0011 235677889988888899999999987652221111 011223578
Q ss_pred EEEEecCCeeeecCCcc--eEEEEE
Q 047325 333 CLAVEEDRDSSSSTSSC--AQRWIV 355 (368)
Q Consensus 333 ~l~~~~~~~~~~~~~~~--~~~w~l 355 (368)
.|+++++|+++++..++ +++|.+
T Consensus 863 GIavd~dG~lyVaDt~Nn~Irvid~ 887 (1057)
T PLN02919 863 GLALGENGRLFVADTNNSLIRYLDL 887 (1057)
T ss_pred EEEEeCCCCEEEEECCCCEEEEEEC
Confidence 89999999865544333 444443
No 284
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.12 E-value=5.1e-09 Score=91.33 Aligned_cols=183 Identities=10% Similarity=0.131 Sum_probs=132.6
Q ss_pred CCCeeEEEEeCCEEEEEeCCCeEEEEeecCCCccccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEE
Q 047325 82 SGLVKAIVISGEKIFTGHQDGKIRVWKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMS 161 (368)
Q Consensus 82 ~~~v~~~~~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 161 (368)
...+.|+++++..++-|+.+|.|++.+...... ... .|...
T Consensus 39 ~D~is~~av~~~~~~~GtH~g~v~~~~~~~~~~-~~~---------------------------------~~s~~----- 79 (846)
T KOG2066|consen 39 NDAISCCAVHDKFFALGTHRGAVYLTTCQGNPK-TNF---------------------------------DHSSS----- 79 (846)
T ss_pred hhHHHHHHhhcceeeeccccceEEEEecCCccc-ccc---------------------------------ccccc-----
Confidence 456778888899999999999999998765421 000 03332
Q ss_pred EcCCCCEEEEEeCCCcEEEEEccCCeEEEEeecCCCceEEEEeCCC------CeEEEEcCCCeEEEEEcCCCCCCccccc
Q 047325 162 LDQDCGLLYTASWDRTFKVWRISDSKCLESVSAHDDAVNSVVSSSE------GLIFTGSADGTVKVWKREQHGKGTKHSL 235 (368)
Q Consensus 162 ~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~------~~l~~~~~dg~i~i~d~~~~~~~~~~~~ 235 (368)
..+|.++++|+.||.|.|-.+-+.+....+. ...++.+++++|+ +.+++|+..| +.++.-+-.+. ..
T Consensus 80 -~~~Gey~asCS~DGkv~I~sl~~~~~~~~~d-f~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgn----k~ 152 (846)
T KOG2066|consen 80 -ILEGEYVASCSDDGKVVIGSLFTDDEITQYD-FKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGN----KD 152 (846)
T ss_pred -ccCCceEEEecCCCcEEEeeccCCccceeEe-cCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcC----cc
Confidence 5579999999999999999998888777665 4578999999998 2899999988 88877654433 11
Q ss_pred ceeeccccccEEEEEEcCCCCEEEEecCCCcEEEEeCCCccccceeeeccceEE-----EEEEe-CCCEEEEeeCCCeEE
Q 047325 236 AQTLLKQECAVTALVVSSSRSIVYCGSSDGLVNFWEREKQLSHGGVLKGHKLAV-----LCLAA-AGKLVFSGSADKTIC 309 (368)
Q Consensus 236 ~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~-----~~~~~-~~~~l~~~~~dg~i~ 309 (368)
........++|.++.|. |+++|-++.+| |++||+.+++.+......+.... ..+.| +...|+.|-.| +|+
T Consensus 153 ~v~l~~~eG~I~~i~W~--g~lIAWand~G-v~vyd~~~~~~l~~i~~p~~~~R~e~fpphl~W~~~~~LVIGW~d-~v~ 228 (846)
T KOG2066|consen 153 SVVLSEGEGPIHSIKWR--GNLIAWANDDG-VKVYDTPTRQRLTNIPPPSQSVRPELFPPHLHWQDEDRLVIGWGD-SVK 228 (846)
T ss_pred ceeeecCccceEEEEec--CcEEEEecCCC-cEEEeccccceeeccCCCCCCCCcccCCCceEecCCCeEEEecCC-eEE
Confidence 12455677899999994 78999998888 89999988766654444443222 22333 45567777665 688
Q ss_pred EEecC
Q 047325 310 VWRRD 314 (368)
Q Consensus 310 iw~~~ 314 (368)
|..+.
T Consensus 229 i~~I~ 233 (846)
T KOG2066|consen 229 ICSIK 233 (846)
T ss_pred EEEEe
Confidence 88776
No 285
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=99.10 E-value=1.6e-09 Score=81.93 Aligned_cols=146 Identities=17% Similarity=0.273 Sum_probs=95.4
Q ss_pred EEEEecCCEEEEccCCCcEEEEcCCcceecccC-----CCCCee-EEEEeCCEEEEEeC-----CCeEEEEeecCCCccc
Q 047325 48 YSLAASKDLLYTGSDSKNIRVWKNLKEFCGFKA-----SSGLVK-AIVISGEKIFTGHQ-----DGKIRVWKISPKNQSV 116 (368)
Q Consensus 48 ~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~-----~~~~v~-~~~~~~~~l~s~~~-----dg~i~vw~~~~~~~~~ 116 (368)
..+...++.++++..||.+.+.+.... ..... |.+... ++.-.++.+.++.. -+..+.|+++......
T Consensus 95 ~~~s~~~t~V~~~~~dg~~~v~s~~~~-~~~~~~i~~~~~~~as~~~~~~~~~i~s~~~g~~n~~d~~~a~~~~p~~t~~ 173 (319)
T KOG4714|consen 95 DACTMTDNRVCIGYADGSLAVFSTDKD-LALMSRIPSIHSGSASRKICRHGNSILSGGCGNWNAQDNFYANTLDPIKTLI 173 (319)
T ss_pred ccccccCCceEecCCCceEEEEechHH-HhhhhhcccccccccccceeecccEEecCCcceEeeccceeeeccccccccc
Confidence 333444568999999999999987752 22111 111111 11111444444331 2334455555433222
Q ss_pred cccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcCC-CCEEEEEeCCCcEEEEEccCCe-EEEEeec
Q 047325 117 HKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQD-CGLLYTASWDRTFKVWRISDSK-CLESVSA 194 (368)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~d~~i~iwd~~~~~-~~~~~~~ 194 (368)
.... -.+.|.+++-+|. .+.+++|+.||.+-+||.+... +...++.
T Consensus 174 ~~~~--------------------------------~~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~a 221 (319)
T KOG4714|consen 174 PSKK--------------------------------ALDAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKA 221 (319)
T ss_pred cccc--------------------------------ccccchhhhCCcccccEEEEecCCCeEEEEEcccccchHHHHHH
Confidence 1111 2244889999995 4577788899999999998764 3456778
Q ss_pred CCCceEEEEeCCCC--eEEEEcCCCeEEEEEcCC
Q 047325 195 HDDAVNSVVSSSEG--LIFTGSADGTVKVWKREQ 226 (368)
Q Consensus 195 ~~~~v~~~~~~~~~--~l~~~~~dg~i~i~d~~~ 226 (368)
|+.++..+.|+|.. .|+++++||.+..||...
T Consensus 222 hk~~i~eV~FHpk~p~~Lft~sedGslw~wdas~ 255 (319)
T KOG4714|consen 222 HKAEIWEVHFHPKNPEHLFTCSEDGSLWHWDAST 255 (319)
T ss_pred hhhhhhheeccCCCchheeEecCCCcEEEEcCCC
Confidence 99999999999987 999999999999999873
No 286
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=99.10 E-value=5.2e-08 Score=74.29 Aligned_cols=218 Identities=12% Similarity=0.036 Sum_probs=137.1
Q ss_pred CCEEEEEeCCCeEEEEeecCCCccccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEE-cCCCCEEE
Q 047325 92 GEKIFTGHQDGKIRVWKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSL-DQDCGLLY 170 (368)
Q Consensus 92 ~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~~l~ 170 (368)
..+|+.|+.-|.+.+|...+.+.....-.. |...|+-+.= ......+.
T Consensus 84 c~~la~gG~~g~fd~~~~~tn~~h~~~cd~-------------------------------snn~v~~~~r~cd~~~~~~ 132 (344)
T KOG4532|consen 84 CVTLADGGASGQFDLFACNTNDGHLYQCDV-------------------------------SNNDVTLVKRYCDLKFPLN 132 (344)
T ss_pred ccEEEeccccceeeeecccCcccceeeecc-------------------------------cccchhhhhhhccccccee
Confidence 568999999999999999876532221110 2222221111 11223466
Q ss_pred EEeCCCcEEEEEccCCeEEEEeecCCCceEEEEeCCCC-eEEEEcCCCeEEEEEcCCCCCCcccccce-eeccccccEEE
Q 047325 171 TASWDRTFKVWRISDSKCLESVSAHDDAVNSVVSSSEG-LIFTGSADGTVKVWKREQHGKGTKHSLAQ-TLLKQECAVTA 248 (368)
Q Consensus 171 ~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~-~~~~~~~~i~~ 248 (368)
.++.|.++++.++.-+..........-.+.++.+++++ ++++.+....|..|.+..... .... ........-.+
T Consensus 133 i~sndht~k~~~~~~~s~~~~~h~~~~~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~se----y~~~~~~a~t~D~gF~ 208 (344)
T KOG4532|consen 133 IASNDHTGKTMVVSGDSNKFAVHNQNLTQNSLHYSNDPSWGSSVGDSRRVFRYAIDDESE----YIENIYEAPTSDHGFY 208 (344)
T ss_pred eccCCcceeEEEEecCcccceeeccccceeeeEEcCCCceEEEecCCCcceEEEeCCccc----eeeeeEecccCCCcee
Confidence 77888999998886544333222222347899999999 888889899999999976543 1111 23334445567
Q ss_pred EEEcCCCCEEEEecCCCcEEEEeCCCccccce----eeeccceEE--EEEEeCC--CEEEEeeCCCeEEEEecCCCceee
Q 047325 249 LVVSSSRSIVYCGSSDGLVNFWEREKQLSHGG----VLKGHKLAV--LCLAAAG--KLVFSGSADKTICVWRRDGAIHTC 320 (368)
Q Consensus 249 ~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~----~~~~~~~~~--~~~~~~~--~~l~~~~~dg~i~iw~~~~~~~~~ 320 (368)
..|+.....+|++..||++.|||++....+.. ....|.+.+ ..|++.| .+|+..-.-+.+++-|+++.....
T Consensus 209 ~S~s~~~~~FAv~~Qdg~~~I~DVR~~~tpm~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~~q 288 (344)
T KOG4532|consen 209 NSFSENDLQFAVVFQDGTCAIYDVRNMATPMAEISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYVNHQ 288 (344)
T ss_pred eeeccCcceEEEEecCCcEEEEEecccccchhhhcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccCceee
Confidence 88999889999999999999999985433322 223455555 4555543 356666667889999988753222
Q ss_pred eEee-----ecccc-CeeEEEEecCCeeee
Q 047325 321 LSVL-----TGHTG-PVKCLAVEEDRDSSS 344 (368)
Q Consensus 321 ~~~~-----~~h~~-~v~~l~~~~~~~~~~ 344 (368)
+..+ ..|.. .|..-.|+.++...-
T Consensus 289 ~I~i~~d~~~~~~tq~ifgt~f~~~n~s~~ 318 (344)
T KOG4532|consen 289 VIVIPDDVERKHNTQHIFGTNFNNENESND 318 (344)
T ss_pred EEecCccccccccccccccccccCCCcccc
Confidence 2211 22333 377778887776443
No 287
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.09 E-value=8.2e-08 Score=84.72 Aligned_cols=222 Identities=13% Similarity=0.192 Sum_probs=146.6
Q ss_pred cEEEEEecCCEEEEccCCCcEEEEcCCcce-ecccCCCCC-eeEEEEeC--CEEEEEeCCCe-----EEEEeecCCCccc
Q 047325 46 HIYSLAASKDLLYTGSDSKNIRVWKNLKEF-CGFKASSGL-VKAIVISG--EKIFTGHQDGK-----IRVWKISPKNQSV 116 (368)
Q Consensus 46 ~i~~~~~~~~~l~s~~~dg~i~iw~~~~~~-~~~~~~~~~-v~~~~~~~--~~l~s~~~dg~-----i~vw~~~~~~~~~ 116 (368)
.|.|++.++..+|.|+.+|.|.+.+..-.. ..++.+... |..+.... ++|++.+.|+. ++||+++.-+...
T Consensus 27 ~isc~~s~~~~vvigt~~G~V~~Ln~s~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n~ 106 (933)
T KOG2114|consen 27 AISCCSSSTGSVVIGTADGRVVILNSSFQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKNN 106 (933)
T ss_pred ceeEEcCCCceEEEeeccccEEEecccceeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccCCCC
Confidence 889998888899999999999988876444 778887777 55555543 48888877654 9999998654211
Q ss_pred cccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcCCCCEEEEEeCCCcEEEEEcc----CCeEEEEe
Q 047325 117 HKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCGLLYTASWDRTFKVWRIS----DSKCLESV 192 (368)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~----~~~~~~~~ 192 (368)
. |.....+ + ...........++.+++.+.+-+.+++|-.+|.|..+.-. .+....-.
T Consensus 107 s------P~c~~~~------------r-i~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~ 167 (933)
T KOG2114|consen 107 S------PQCLYEH------------R-IFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQDYS 167 (933)
T ss_pred C------cceeeee------------e-eeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhccccceeee
Confidence 1 0000000 0 0000001145778999999999999999999999988432 12222222
Q ss_pred ecCCCceEEEEeCCCC-e-EEEEcCCCeEEEEEcCCCCCCcccccceeeccccccEEEEEEcCCCCEEEEecCCCcEEEE
Q 047325 193 SAHDDAVNSVVSSSEG-L-IFTGSADGTVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSSSRSIVYCGSSDGLVNFW 270 (368)
Q Consensus 193 ~~~~~~v~~~~~~~~~-~-l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~ 270 (368)
.....+|+.+++..++ . ++++ .-..|.+|.+.... +.......+...+.|..+++....+++++. ..+.+|
T Consensus 168 ~~~~~pITgL~~~~d~~s~lFv~-Tt~~V~~y~l~gr~-----p~~~~ld~~G~~lnCss~~~~t~qfIca~~-e~l~fY 240 (933)
T KOG2114|consen 168 HRGKEPITGLALRSDGKSVLFVA-TTEQVMLYSLSGRT-----PSLKVLDNNGISLNCSSFSDGTYQFICAGS-EFLYFY 240 (933)
T ss_pred ccCCCCceeeEEecCCceeEEEE-ecceeEEEEecCCC-----cceeeeccCCccceeeecCCCCccEEEecC-ceEEEE
Confidence 2346789999999888 3 3433 34578999987321 234557788889999999987665666654 459999
Q ss_pred eCCCccccceeeeccceEEEEEE
Q 047325 271 EREKQLSHGGVLKGHKLAVLCLA 293 (368)
Q Consensus 271 d~~~~~~~~~~~~~~~~~~~~~~ 293 (368)
|............+|......++
T Consensus 241 ~sd~~~~cfaf~~g~kk~~~~~~ 263 (933)
T KOG2114|consen 241 DSDGRGPCFAFEVGEKKEMLVFS 263 (933)
T ss_pred cCCCcceeeeecCCCeEEEEEEe
Confidence 98865554333336665554443
No 288
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=99.08 E-value=2.6e-07 Score=86.78 Aligned_cols=306 Identities=12% Similarity=0.039 Sum_probs=170.6
Q ss_pred cCCcEEEEEecCC--EEEEccCCCcEEEE----cCCccee-cccCCCCCeeEEEEe--CCEEEEEeCCCeEEEEeecCCC
Q 047325 43 EEGHIYSLAASKD--LLYTGSDSKNIRVW----KNLKEFC-GFKASSGLVKAIVIS--GEKIFTGHQDGKIRVWKISPKN 113 (368)
Q Consensus 43 h~~~i~~~~~~~~--~l~s~~~dg~i~iw----~~~~~~~-~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~vw~~~~~~ 113 (368)
..+.|.++.+-.+ .++.+..+|.|.+. +...... ..-.-...|.+++|+ ++.|+..+.++++.+.+-+ -+
T Consensus 74 ~~~~ivs~~yl~d~~~l~~~~~~Gdi~~~~~~~~~~~~~~E~VG~vd~GI~a~~WSPD~Ella~vT~~~~l~~mt~~-fd 152 (928)
T PF04762_consen 74 PNDKIVSFQYLADSESLCIALASGDIILVREDPDPDEDEIEIVGSVDSGILAASWSPDEELLALVTGEGNLLLMTRD-FD 152 (928)
T ss_pred CCCcEEEEEeccCCCcEEEEECCceEEEEEccCCCCCceeEEEEEEcCcEEEEEECCCcCEEEEEeCCCEEEEEecc-ce
Confidence 3467888888644 67788888999998 5554333 233456789999999 6788888889998876422 11
Q ss_pred ccccccCCccccc-------------eeeeeccCCCCce----eEecccceeeeeecCCCEeEEEEcCCCCEEEEEeC--
Q 047325 114 QSVHKRAGTLPTL-------------KDIFKSSIKPSNY----IEVRRHRTALWIRHSDAVSCMSLDQDCGLLYTASW-- 174 (368)
Q Consensus 114 ~~~~~~~~~~~~~-------------~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-- 174 (368)
............. ..+.....+.... ..+.......+. +.+.-..++|-.||.++|+.+.
T Consensus 153 ~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s-~dd~~~~ISWRGDG~yFAVss~~~ 231 (928)
T PF04762_consen 153 PISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLS-WDDGRVRISWRGDGEYFAVSSVEP 231 (928)
T ss_pred EEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccc-cCCCceEEEECCCCcEEEEEEEEc
Confidence 1111111000000 0000000000000 000000111222 4456678999999999999875
Q ss_pred -C---CcEEEEEccCCeEEEEeecCCCceEEEEeCCCC-eEEEEcC---CCeEEEEEcCCCCCCcccccceeeccccccE
Q 047325 175 -D---RTFKVWRISDSKCLESVSAHDDAVNSVVSSSEG-LIFTGSA---DGTVKVWKREQHGKGTKHSLAQTLLKQECAV 246 (368)
Q Consensus 175 -d---~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~---dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~i 246 (368)
. ..+++|+- .|+...+-+.-.+--.+++|.|.| ++++... ...|.+|.-+.... ......+......|
T Consensus 232 ~~~~~R~iRVy~R-eG~L~stSE~v~gLe~~l~WrPsG~lIA~~q~~~~~~~VvFfErNGLrh---geF~l~~~~~~~~v 307 (928)
T PF04762_consen 232 ETGSRRVIRVYSR-EGELQSTSEPVDGLEGALSWRPSGNLIASSQRLPDRHDVVFFERNGLRH---GEFTLRFDPEEEKV 307 (928)
T ss_pred CCCceeEEEEECC-CceEEeccccCCCccCCccCCCCCCEEEEEEEcCCCcEEEEEecCCcEe---eeEecCCCCCCcee
Confidence 2 47999995 476555555444445678999999 5555543 35677776543211 11111223456779
Q ss_pred EEEEEcCCCCEEEEecCCCcEEEEeCCCccc-cceeeec-cce--EEEEEEeC-CCEEEEeeCCCeEEEEecC----CCc
Q 047325 247 TALVVSSSRSIVYCGSSDGLVNFWEREKQLS-HGGVLKG-HKL--AVLCLAAA-GKLVFSGSADKTICVWRRD----GAI 317 (368)
Q Consensus 247 ~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~-~~~~~~~-~~~--~~~~~~~~-~~~l~~~~~dg~i~iw~~~----~~~ 317 (368)
..+.|++++..||.-..|. |.+|-..+-.- ++..+.- ... ....|+|. ...|.....+|.+..+++. ...
T Consensus 308 ~~l~Wn~ds~iLAv~~~~~-vqLWt~~NYHWYLKqei~~~~~~~~~~~~Wdpe~p~~L~v~t~~g~~~~~~~~~~v~~s~ 386 (928)
T PF04762_consen 308 IELAWNSDSEILAVWLEDR-VQLWTRSNYHWYLKQEIRFSSSESVNFVKWDPEKPLRLHVLTSNGQYEIYDFAWDVSRSP 386 (928)
T ss_pred eEEEECCCCCEEEEEecCC-ceEEEeeCCEEEEEEEEEccCCCCCCceEECCCCCCEEEEEecCCcEEEEEEEEEEEecC
Confidence 9999999999999987665 99998765321 1122221 111 12444442 3445555555555544421 000
Q ss_pred ----------------------------eee--eEeeeccccCeeEEEEecCCe--eeecCCcceEEEEEe
Q 047325 318 ----------------------------HTC--LSVLTGHTGPVKCLAVEEDRD--SSSSTSSCAQRWIVY 356 (368)
Q Consensus 318 ----------------------------~~~--~~~~~~h~~~v~~l~~~~~~~--~~~~~~~~~~~w~l~ 356 (368)
+.+ ...+ ....+|.+++|++++. .+.++++...+|.+.
T Consensus 387 ~~~~~D~g~vaVIDG~~lllTpf~~a~VPPPMs~~~l-~~~~~v~~vaf~~~~~~~avl~~d~~l~~~~~~ 456 (928)
T PF04762_consen 387 GSSPNDNGTVAVIDGNKLLLTPFRRAVVPPPMSSYEL-ELPSPVNDVAFSPSNSRFAVLTSDGSLSIYEWD 456 (928)
T ss_pred CCCccCceEEEEEeCCeEEEecccccCCCchHhceEE-cCCCCcEEEEEeCCCCeEEEEECCCCEEEEEec
Confidence 000 1111 2356799999999985 344556666666543
No 289
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=99.07 E-value=1.8e-07 Score=77.73 Aligned_cols=265 Identities=11% Similarity=0.123 Sum_probs=166.2
Q ss_pred ccccccCCCceeeeccCcCCc-----EEEEEecCCEEEEccCCCcEEEEcCCcceecccCC---CCCeeEEEEeCC----
Q 047325 26 QFEENLPQNGLIGSLVREEGH-----IYSLAASKDLLYTGSDSKNIRVWKNLKEFCGFKAS---SGLVKAIVISGE---- 93 (368)
Q Consensus 26 ~~~~~~~~~~~~~~~~~h~~~-----i~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~---~~~v~~~~~~~~---- 93 (368)
.+..+...+.++.++.+-..+ +.....+..++|-- ....+.|+++...+.....+ ...|....+++.
T Consensus 110 ~~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~~D~y~ARv-v~~sl~i~e~t~n~~~~p~~~lr~~gi~dFsisP~~n~~ 188 (561)
T COG5354 110 VFVWDIASGMIVFSFNGISQPYLGWPVLKFSIDDKYVARV-VGSSLYIHEITDNIEEHPFKNLRPVGILDFSISPEGNHD 188 (561)
T ss_pred eeEEeccCceeEeeccccCCcccccceeeeeecchhhhhh-ccCeEEEEecCCccccCchhhccccceeeEEecCCCCCc
Confidence 556677788888888777666 33334444443322 23468888864333222222 234555555522
Q ss_pred EEE-----EEeCCCeEEEEeecCCCccccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcCCCCE
Q 047325 94 KIF-----TGHQDGKIRVWKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCGL 168 (368)
Q Consensus 94 ~l~-----s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 168 (368)
.|+ ..+.++++++|.+..+........ ..-.=..+.|++.|++
T Consensus 189 ~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~l--------------------------------fk~~~~qLkW~~~g~~ 236 (561)
T COG5354 189 ELAYWTPEKLNKPAMVRILSIPKNSVLVTKNL--------------------------------FKVSGVQLKWQVLGKY 236 (561)
T ss_pred eEEEEccccCCCCcEEEEEEccCCCeeeeeee--------------------------------EeecccEEEEecCCce
Confidence 222 134566677776654332211111 0111134667777665
Q ss_pred EEEEe-----------CCCcEEEEEccCCeEEEEeecCCCceEEEEeCCCC---eEEEEcCCCeEEEEEcCCCCCCcccc
Q 047325 169 LYTAS-----------WDRTFKVWRISDSKCLESVSAHDDAVNSVVSSSEG---LIFTGSADGTVKVWKREQHGKGTKHS 234 (368)
Q Consensus 169 l~~~~-----------~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~---~l~~~~~dg~i~i~d~~~~~~~~~~~ 234 (368)
+++-- ....+.|++++...+... ....++|...+|.|.+ -+++|..+..+.++|++.+
T Consensus 237 ll~l~~t~~ksnKsyfgesnLyl~~~~e~~i~V~-~~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~N------- 308 (561)
T COG5354 237 LLVLVMTHTKSNKSYFGESNLYLLRITERSIPVE-KDLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGN------- 308 (561)
T ss_pred EEEEEEEeeecccceeccceEEEEeeccccccee-ccccccceeeeecccCCceeEEecccccceeecccccc-------
Confidence 54321 135688888874433332 2567899999999987 4556678899999999864
Q ss_pred cceeeccccccEEEEEEcCCCCEEEEecCC---CcEEEEeCCCccccceeeeccceEEEEEEeCCCEEEEee------CC
Q 047325 235 LAQTLLKQECAVTALVVSSSRSIVYCGSSD---GLVNFWEREKQLSHGGVLKGHKLAVLCLAAAGKLVFSGS------AD 305 (368)
Q Consensus 235 ~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d---g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~------~d 305 (368)
......+..-..+.|+|.+++++.++-| |.+.+||..........+.+.......++||++++.+.. .|
T Consensus 309 --l~~~~Pe~~rNT~~fsp~~r~il~agF~nl~gni~i~~~~~rf~~~~~~~~~n~s~~~wspd~qF~~~~~ts~k~~~D 386 (561)
T COG5354 309 --LRFYFPEQKRNTIFFSPHERYILFAGFDNLQGNIEIFDPAGRFKVAGAFNGLNTSYCDWSPDGQFYDTDTTSEKLRVD 386 (561)
T ss_pred --eEEecCCcccccccccCcccEEEEecCCccccceEEeccCCceEEEEEeecCCceEeeccCCceEEEecCCCcccccC
Confidence 2223344455678899999999886644 689999998877776677778888889999999988764 37
Q ss_pred CeEEEEecCCCceeeeEeeeccccCeeEEEEecCCeee
Q 047325 306 KTICVWRRDGAIHTCLSVLTGHTGPVKCLAVEEDRDSS 343 (368)
Q Consensus 306 g~i~iw~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~ 343 (368)
..|.|||+.... +. ..+.+.|.|.+++.
T Consensus 387 n~i~l~~v~g~~---~f-------el~~~~W~p~~~~~ 414 (561)
T COG5354 387 NSIKLWDVYGAK---VF-------ELTNITWDPSGQYV 414 (561)
T ss_pred cceEEEEecCch---hh-------hhhhccccCCcccc
Confidence 889999987641 11 45667788877743
No 290
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.03 E-value=1.7e-08 Score=82.35 Aligned_cols=243 Identities=14% Similarity=0.098 Sum_probs=160.7
Q ss_pred CcCCcEEEEEec-CCEEEEccCCCcEEEEcCCc-----ceecccCCCCCeeEEEEe--CCEEEEEeC-CCeEEEEeecCC
Q 047325 42 REEGHIYSLAAS-KDLLYTGSDSKNIRVWKNLK-----EFCGFKASSGLVKAIVIS--GEKIFTGHQ-DGKIRVWKISPK 112 (368)
Q Consensus 42 ~h~~~i~~~~~~-~~~l~s~~~dg~i~iw~~~~-----~~~~~~~~~~~v~~~~~~--~~~l~s~~~-dg~i~vw~~~~~ 112 (368)
-|.+.|+-+... -+++.+++.||.++.|.... -+..+..|.+.|.+++.+ +-.+.|.+. |..++++|+++-
T Consensus 7 mhrd~i~hv~~tka~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvEn~ 86 (558)
T KOG0882|consen 7 MHRDVITHVFPTKAKFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDVENF 86 (558)
T ss_pred cccceeeeEeeehhheEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccccceeEeeccCcccceeEEEeecc
Confidence 377778877665 56999999999999998654 234567888888888877 667777677 999999999987
Q ss_pred CccccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcCC-C-CEEEEE-eCCCcEEEEEccCCe--
Q 047325 113 NQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQD-C-GLLYTA-SWDRTFKVWRISDSK-- 187 (368)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~-~~l~~~-~~d~~i~iwd~~~~~-- 187 (368)
....-......|. .+. ...++. . ..++++ -.++.+.++|-...-
T Consensus 87 DminmiKL~~lPg------------------------------~a~-wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q 135 (558)
T KOG0882|consen 87 DMINMIKLVDLPG------------------------------FAE-WVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQ 135 (558)
T ss_pred chhhhcccccCCC------------------------------ceE-EecCCCCeeeeEEeecccCCCcEEECCcCCcCc
Confidence 6554333332221 111 111221 1 123333 357899999976443
Q ss_pred EEEEeecCCCceEEEEeCCCC-eEEEEcCCCeEEEEEcCCCCC------Cc---ccccceeeccccccEEEEEEcCCCCE
Q 047325 188 CLESVSAHDDAVNSVVSSSEG-LIFTGSADGTVKVWKREQHGK------GT---KHSLAQTLLKQECAVTALVVSSSRSI 257 (368)
Q Consensus 188 ~~~~~~~~~~~v~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~------~~---~~~~~~~~~~~~~~i~~~~~~~~~~~ 257 (368)
....-+-|..+|.++.+.+-+ .+++....|.|.-|.....-+ .. ....+..+........++.|+|++..
T Consensus 136 ~~~fkklH~sPV~~i~y~qa~Ds~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~q 215 (558)
T KOG0882|consen 136 DGYFKKLHFSPVKKIRYNQAGDSAVSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQ 215 (558)
T ss_pred cceecccccCceEEEEeeccccceeeccccceeEeecCCCcccCccccccccccccchhhcccccccCccceEEccccCc
Confidence 333444589999999999988 888888899999999873100 00 00112223345567889999999999
Q ss_pred EEEecCCCcEEEEeCCCcccccee-------------------------------eeccceE---EEEEEeCCCEEEEee
Q 047325 258 VYCGSSDGLVNFWEREKQLSHGGV-------------------------------LKGHKLA---VLCLAAAGKLVFSGS 303 (368)
Q Consensus 258 l~~~~~dg~i~i~d~~~~~~~~~~-------------------------------~~~~~~~---~~~~~~~~~~l~~~~ 303 (368)
+.+-+.|..|++++.+++...... +..|... -.+|.-.+++|+-|+
T Consensus 216 istl~~DrkVR~F~~KtGklvqeiDE~~t~~~~q~ks~y~l~~VelgRRmaverelek~~~~~~~~~~fdes~~flly~t 295 (558)
T KOG0882|consen 216 ISTLNPDRKVRGFVFKTGKLVQEIDEVLTDAQYQPKSPYGLMHVELGRRMAVERELEKHGSTVGTNAVFDESGNFLLYGT 295 (558)
T ss_pred ccccCcccEEEEEEeccchhhhhhhccchhhhhccccccccceeehhhhhhHHhhHhhhcCcccceeEEcCCCCEEEeec
Confidence 999999999999998765432110 0112111 134555688888777
Q ss_pred CCCeEEEEecCCC
Q 047325 304 ADKTICVWRRDGA 316 (368)
Q Consensus 304 ~dg~i~iw~~~~~ 316 (368)
-=| |++.++++.
T Consensus 296 ~~g-ikvin~~tn 307 (558)
T KOG0882|consen 296 ILG-IKVINLDTN 307 (558)
T ss_pred cee-EEEEEeecC
Confidence 655 777777665
No 291
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=99.03 E-value=3.3e-06 Score=69.96 Aligned_cols=259 Identities=10% Similarity=0.080 Sum_probs=140.6
Q ss_pred cCCCceeeeccCcCCcEEEEEecCCEEE-Ecc---------CCCcEEEEcCCccee--cccC---------CCCCeeEEE
Q 047325 31 LPQNGLIGSLVREEGHIYSLAASKDLLY-TGS---------DSKNIRVWKNLKEFC--GFKA---------SSGLVKAIV 89 (368)
Q Consensus 31 ~~~~~~~~~~~~h~~~i~~~~~~~~~l~-s~~---------~dg~i~iw~~~~~~~--~~~~---------~~~~v~~~~ 89 (368)
....+++.++..-..+-.-++.+++.|+ +.+ .+..|.+||..+... .+.. .......+.
T Consensus 34 ~~~~~v~g~i~~G~~P~~~~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~~~~~~~~~~ls 113 (352)
T TIGR02658 34 GEAGRVLGMTDGGFLPNPVVASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFLVGTYPWMTSLT 113 (352)
T ss_pred CCCCEEEEEEEccCCCceeECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhhccCccceEEEC
Confidence 3445555555433333222555666444 444 578999999875322 2221 111234444
Q ss_pred EeCCEEEEEe-C-CCeEEEEeecCCCccccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcCCCC
Q 047325 90 ISGEKIFTGH-Q-DGKIRVWKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCG 167 (368)
Q Consensus 90 ~~~~~l~s~~-~-dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 167 (368)
.+|++|+... . +..|.+.|+.+++.......+... . .+ -..+-..+..+.|+.
T Consensus 114 ~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~~~---~--------------------vy--~t~e~~~~~~~~Dg~ 168 (352)
T TIGR02658 114 PDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVPDCY---H--------------------IF--PTANDTFFMHCRDGS 168 (352)
T ss_pred CCCCEEEEecCCCCCEEEEEECCCCcEEEEEeCCCCc---E--------------------EE--EecCCccEEEeecCc
Confidence 4588888776 3 689999999988754433321100 0 00 001111122223333
Q ss_pred EEEE-EeCCCcEEEEEccCCeEEEEeecCCCceEE-EEeCC-CC-eEEEEcCCCeEEEEEcCCCCCCcccccceeec---
Q 047325 168 LLYT-ASWDRTFKVWRISDSKCLESVSAHDDAVNS-VVSSS-EG-LIFTGSADGTVKVWKREQHGKGTKHSLAQTLL--- 240 (368)
Q Consensus 168 ~l~~-~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~-~~~~~-~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~--- 240 (368)
.+.. -..+|.... . ....+.....++.. -.+.+ ++ .+++..+ |.|.+.|+....... ......+.
T Consensus 169 ~~~v~~d~~g~~~~---~---~~~vf~~~~~~v~~rP~~~~~dg~~~~vs~e-G~V~~id~~~~~~~~-~~~~~~~~~~~ 240 (352)
T TIGR02658 169 LAKVGYGTKGNPKI---K---PTEVFHPEDEYLINHPAYSNKSGRLVWPTYT-GKIFQIDLSSGDAKF-LPAIEAFTEAE 240 (352)
T ss_pred eEEEEecCCCceEE---e---eeeeecCCccccccCCceEcCCCcEEEEecC-CeEEEEecCCCccee-cceeeeccccc
Confidence 2221 122222110 0 00111110000000 02344 66 5655555 999999975433211 11111111
Q ss_pred ----cccccEEEEEEcCCCCEEEEec----------CCCcEEEEeCCCccccceeeeccceEEEEEEeCCC-EEEEee-C
Q 047325 241 ----KQECAVTALVVSSSRSIVYCGS----------SDGLVNFWEREKQLSHGGVLKGHKLAVLCLAAAGK-LVFSGS-A 304 (368)
Q Consensus 241 ----~~~~~i~~~~~~~~~~~l~~~~----------~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~-~ 304 (368)
-..+.+.-++++|+++.++... ..+.|.++|..+.+.......++...-+.+++|++ +|++.. .
T Consensus 241 ~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~vG~~~~~iavS~Dgkp~lyvtn~~ 320 (352)
T TIGR02658 241 KADGWRPGGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKTGKRLRKIELGHEIDSINVSQDAKPLLYALSTG 320 (352)
T ss_pred cccccCCCcceeEEEcCCCCEEEEEecCCccccccCCCCEEEEEECCCCeEEEEEeCCCceeeEEECCCCCeEEEEeCCC
Confidence 1234455699999999888742 22479999999988887777788888899999999 887666 5
Q ss_pred CCeEEEEecCCCceeeeEee
Q 047325 305 DKTICVWRRDGAIHTCLSVL 324 (368)
Q Consensus 305 dg~i~iw~~~~~~~~~~~~~ 324 (368)
++.|.++|..+. +.+..+
T Consensus 321 s~~VsViD~~t~--k~i~~i 338 (352)
T TIGR02658 321 DKTLYIFDAETG--KELSSV 338 (352)
T ss_pred CCcEEEEECcCC--eEEeee
Confidence 788999998776 556655
No 292
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=99.03 E-value=2.6e-07 Score=76.22 Aligned_cols=144 Identities=7% Similarity=0.032 Sum_probs=106.7
Q ss_pred eecCCCEeEEEEcCCCCEEEEEeCCC-cEEEEEccCCeEEEEeecCCCceEEEEeCCCC-eEEEEcCCCeEEEEEcCCCC
Q 047325 151 IRHSDAVSCMSLDQDCGLLYTASWDR-TFKVWRISDSKCLESVSAHDDAVNSVVSSSEG-LIFTGSADGTVKVWKREQHG 228 (368)
Q Consensus 151 ~~~~~~v~~~~~~~~~~~l~~~~~d~-~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~ 228 (368)
.+|...|.-..+.-+++-++.|..|| .+-++|.++++.. .+...-+.|.++..+++| +++++.....|.+.|+.++.
T Consensus 356 v~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~k-r~e~~lg~I~av~vs~dGK~~vvaNdr~el~vididngn 434 (668)
T COG4946 356 VGKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEVK-RIEKDLGNIEAVKVSPDGKKVVVANDRFELWVIDIDNGN 434 (668)
T ss_pred cCCCCceEEEEEccCCcceEEeccCCceEEEEecCCceEE-EeeCCccceEEEEEcCCCcEEEEEcCceEEEEEEecCCC
Confidence 45778888888888888899999999 8999999877644 455567889999999999 78888888899999998873
Q ss_pred CCcccccceeeccccccEEEEEEcCCCCEEEEecCCC----cEEEEeCCCccccceeeeccceEEEEEEeCCCEEEE
Q 047325 229 KGTKHSLAQTLLKQECAVTALVVSSSRSIVYCGSSDG----LVNFWEREKQLSHGGVLKGHKLAVLCLAAAGKLVFS 301 (368)
Q Consensus 229 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg----~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 301 (368)
. ...-....+-|+.+.|+|+++++|-+--+| .|+++|+..++.............-+|.|++++|.-
T Consensus 435 v------~~idkS~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~Kiy~vTT~ta~DfsPaFD~d~ryLYf 505 (668)
T COG4946 435 V------RLIDKSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGGKIYDVTTPTAYDFSPAFDPDGRYLYF 505 (668)
T ss_pred e------eEecccccceeEEEEEcCCceeEEEecCcceeeeeEEEEecCCCeEEEecCCcccccCcccCCCCcEEEE
Confidence 2 222233456799999999999999887666 589999987655432222222223445556665543
No 293
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=99.03 E-value=2.5e-09 Score=84.15 Aligned_cols=162 Identities=14% Similarity=0.208 Sum_probs=115.7
Q ss_pred EEEeCCCcEEEEEccCCeEEEEeecCCCceEEEEeCCCC-eEEEEcCCCeEEEEEcCCCCCCcccccceeeccccccEEE
Q 047325 170 YTASWDRTFKVWRISDSKCLESVSAHDDAVNSVVSSSEG-LIFTGSADGTVKVWKREQHGKGTKHSLAQTLLKQECAVTA 248 (368)
Q Consensus 170 ~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~i~~ 248 (368)
++.+.+-.+.+-|+++|... .+. ..+.|.++.|...+ +++.|+.+|.|..+|+|...++.... ....-|...|++
T Consensus 228 fs~G~sqqv~L~nvetg~~q-sf~-sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~--a~rlyh~Ssvts 303 (425)
T KOG2695|consen 228 FSVGLSQQVLLTNVETGHQQ-SFQ-SKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWC--AQRLYHDSSVTS 303 (425)
T ss_pred ecccccceeEEEEeeccccc-ccc-cchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcc--eEEEEcCcchhh
Confidence 44555677889998877533 333 56678888888755 99999999999999999764433322 223357888999
Q ss_pred EEEcC-CCCEEEEecCCCcEEEEeCCCccc--cceeeeccceEE----EEEEeCCCEEEEeeCCCeEEEEecCCCceeee
Q 047325 249 LVVSS-SRSIVYCGSSDGLVNFWEREKQLS--HGGVLKGHKLAV----LCLAAAGKLVFSGSADKTICVWRRDGAIHTCL 321 (368)
Q Consensus 249 ~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~--~~~~~~~~~~~~----~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~ 321 (368)
+..-. ++++|++.+.+|.|.+||++--+. -...+.+|.... ..+.+....++++++|...|||.++.+ ..+
T Consensus 304 lq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdDcytRiWsl~~g--hLl 381 (425)
T KOG2695|consen 304 LQILQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDDCYTRIWSLDSG--HLL 381 (425)
T ss_pred hhhhccccceEeeccCcCceeEeeehhhhcccceeeeecccccccccccccccccceEEEccCeeEEEEEecccC--cee
Confidence 88776 788999999999999999985433 234556665433 345567788999999999999998876 555
Q ss_pred Eeeecc----ccCeeEEEEe
Q 047325 322 SVLTGH----TGPVKCLAVE 337 (368)
Q Consensus 322 ~~~~~h----~~~v~~l~~~ 337 (368)
.+++-. +.-+.+++|.
T Consensus 382 ~tipf~~s~~e~d~~sv~~~ 401 (425)
T KOG2695|consen 382 CTIPFPYSASEVDIPSVAFD 401 (425)
T ss_pred eccCCCCccccccccceehh
Confidence 555422 2235556664
No 294
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=98.99 E-value=1.4e-06 Score=73.50 Aligned_cols=287 Identities=11% Similarity=0.079 Sum_probs=164.6
Q ss_pred EEec--CCEEEEccCCCcEEEEcCCc--ceecccCCCCCeeEEEEe--CCEEEEEeC-----------CCeEEEEeecCC
Q 047325 50 LAAS--KDLLYTGSDSKNIRVWKNLK--EFCGFKASSGLVKAIVIS--GEKIFTGHQ-----------DGKIRVWKISPK 112 (368)
Q Consensus 50 ~~~~--~~~l~s~~~dg~i~iw~~~~--~~~~~~~~~~~v~~~~~~--~~~l~s~~~-----------dg~i~vw~~~~~ 112 (368)
+.|+ |.+|+|--..| |.+|--.. .++.|. | ..|.-+.|+ .+||+|-+. ...++|||+.++
T Consensus 216 v~wSP~GTYL~t~Hk~G-I~lWGG~~f~r~~RF~-H-p~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI~tG 292 (698)
T KOG2314|consen 216 VRWSPKGTYLVTFHKQG-IALWGGESFDRIQRFY-H-PGVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDIATG 292 (698)
T ss_pred EEecCCceEEEEEeccc-eeeecCccHHHHHhcc-C-CCceeeecCCccceEEEecCCccccCcccCCCceEEEEEcccc
Confidence 4444 55888887777 67886442 222232 3 235666666 678888653 257999999999
Q ss_pred CccccccCCc-cccceeeeeccCCCCceeEecccceeee--------ee---cCCCEeEEEEcCCCCEEEEEeC-----C
Q 047325 113 NQSVHKRAGT-LPTLKDIFKSSIKPSNYIEVRRHRTALW--------IR---HSDAVSCMSLDQDCGLLYTASW-----D 175 (368)
Q Consensus 113 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~---~~~~v~~~~~~~~~~~l~~~~~-----d 175 (368)
.....+.... ....-.++..+.+...+..+......++ .+ ....|....|+|.++.||-=.. -
T Consensus 293 ~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~~sisIyEtpsf~lld~Kslki~gIr~FswsP~~~llAYwtpe~~~~p 372 (698)
T KOG2314|consen 293 LLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTGNSISIYETPSFMLLDKKSLKISGIRDFSWSPTSNLLAYWTPETNNIP 372 (698)
T ss_pred chhcceeccCCCccccceEEeccCCceeEEeccceEEEEecCceeeecccccCCccccCcccCCCcceEEEEcccccCCc
Confidence 8766554421 1111223333333333333322222211 11 2346777788888776654332 1
Q ss_pred CcEEEEEccCCeEEEEeecCCCceEEEEeCCCC-eEEEE----------cCCCeEEEEEcCCCCCCcccccceeeccccc
Q 047325 176 RTFKVWRISDSKCLESVSAHDDAVNSVVSSSEG-LIFTG----------SADGTVKVWKREQHGKGTKHSLAQTLLKQEC 244 (368)
Q Consensus 176 ~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~----------~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~ 244 (368)
..+.+..+.+++.+++..-+.-.=..+.|-.+| +|+.- +.-..+.|+.++... ..........
T Consensus 373 arvtL~evPs~~~iRt~nlfnVsDckLhWQk~gdyLcvkvdR~tK~~~~g~f~n~eIfrireKd------Ipve~velke 446 (698)
T KOG2314|consen 373 ARVTLMEVPSKREIRTKNLFNVSDCKLHWQKSGDYLCVKVDRHTKSKVKGQFSNLEIFRIREKD------IPVEVVELKE 446 (698)
T ss_pred ceEEEEecCccceeeeccceeeeccEEEeccCCcEEEEEEEeeccccccceEeeEEEEEeeccC------CCceeeecch
Confidence 246666777777666655554444455666666 44332 112235566665432 1222234556
Q ss_pred cEEEEEEcCCCCEEEEecC---CCcEEEEeCCC-ccc--cceeeeccceEEEEEEeCCCEEEEee---CCCeEEEEecCC
Q 047325 245 AVTALVVSSSRSIVYCGSS---DGLVNFWEREK-QLS--HGGVLKGHKLAVLCLAAAGKLVFSGS---ADKTICVWRRDG 315 (368)
Q Consensus 245 ~i~~~~~~~~~~~l~~~~~---dg~i~i~d~~~-~~~--~~~~~~~~~~~~~~~~~~~~~l~~~~---~dg~i~iw~~~~ 315 (368)
.|...+|-|.|+.+++-+. ..++.+|..++ ... +...+......-+.++|.|++++.+. ..|.+.++|.+.
T Consensus 447 ~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~~~lVk~~dk~~~N~vfwsPkG~fvvva~l~s~~g~l~F~D~~~ 526 (698)
T KOG2314|consen 447 SVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIKKPSLVKELDKKFANTVFWSPKGRFVVVAALVSRRGDLEFYDTDY 526 (698)
T ss_pred heeeeeeccCCCeEEEEEccccccceeEEEeecCCCchhhhhhhcccccceEEEcCCCcEEEEEEecccccceEEEecch
Confidence 7899999999998776543 35788888773 211 12223333444577899999988764 578899999875
Q ss_pred CceeeeEeeeccccCeeEEEEecCCeeeecCC
Q 047325 316 AIHTCLSVLTGHTGPVKCLAVEEDRDSSSSTS 347 (368)
Q Consensus 316 ~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~ 347 (368)
...+.+.. ..| ...+.+.|.|.|+++.+++
T Consensus 527 a~~k~~~~-~eh-~~at~veWDPtGRYvvT~s 556 (698)
T KOG2314|consen 527 ADLKDTAS-PEH-FAATEVEWDPTGRYVVTSS 556 (698)
T ss_pred hhhhhccC-ccc-cccccceECCCCCEEEEee
Confidence 32222221 123 3468899999999766554
No 295
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=98.97 E-value=2.1e-09 Score=84.51 Aligned_cols=143 Identities=18% Similarity=0.246 Sum_probs=108.6
Q ss_pred EEccCCCcEEEEcCCcceecccCCCCCeeEEEEe--CCEEEEEeCCCeEEEEeecCCCccccccCCccccceeeeeccCC
Q 047325 58 YTGSDSKNIRVWKNLKEFCGFKASSGLVKAIVIS--GEKIFTGHQDGKIRVWKISPKNQSVHKRAGTLPTLKDIFKSSIK 135 (368)
Q Consensus 58 ~s~~~dg~i~iw~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (368)
++.+.+-.|-+-|++++....-...+.|.++.|. ++.+..|+.+|.|...|++....-..-
T Consensus 228 fs~G~sqqv~L~nvetg~~qsf~sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~----------------- 290 (425)
T KOG2695|consen 228 FSVGLSQQVLLTNVETGHQQSFQSKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGW----------------- 290 (425)
T ss_pred ecccccceeEEEEeecccccccccchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCc-----------------
Confidence 5556667788889888777666678889999987 789999999999999999876321100
Q ss_pred CCceeEecccceeeeeecCCCEeEEEEcC-CCCEEEEEeCCCcEEEEEccCCeE---EEEeecCCCceEEE--EeCCC-C
Q 047325 136 PSNYIEVRRHRTALWIRHSDAVSCMSLDQ-DCGLLYTASWDRTFKVWRISDSKC---LESVSAHDDAVNSV--VSSSE-G 208 (368)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~---~~~~~~~~~~v~~~--~~~~~-~ 208 (368)
.....-|.+.|+++.... ++++|++.+.+|.|++||++--++ +..+.+|-..-.-+ -..+. |
T Consensus 291 -----------~a~rlyh~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~eeg 359 (425)
T KOG2695|consen 291 -----------CAQRLYHDSSVTSLQILQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPAHVKEEEG 359 (425)
T ss_pred -----------ceEEEEcCcchhhhhhhccccceEeeccCcCceeEeeehhhhcccceeeeecccccccccccccccccc
Confidence 001112999999999887 788999999999999999987666 88888875433322 22333 3
Q ss_pred eEEEEcCCCeEEEEEcCCCC
Q 047325 209 LIFTGSADGTVKVWKREQHG 228 (368)
Q Consensus 209 ~l~~~~~dg~i~i~d~~~~~ 228 (368)
.+++++.|...+||.++.+.
T Consensus 360 ~I~s~GdDcytRiWsl~~gh 379 (425)
T KOG2695|consen 360 SIFSVGDDCYTRIWSLDSGH 379 (425)
T ss_pred eEEEccCeeEEEEEecccCc
Confidence 88899999999999998763
No 296
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=98.96 E-value=2.4e-06 Score=80.46 Aligned_cols=218 Identities=16% Similarity=0.180 Sum_probs=138.9
Q ss_pred CCCCeeEEEEe--CCEEEEEeCCCeEEEEe----ecCCCccccccCCccccceeeeeccCCCCceeEecccceeeeeecC
Q 047325 81 SSGLVKAIVIS--GEKIFTGHQDGKIRVWK----ISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHS 154 (368)
Q Consensus 81 ~~~~v~~~~~~--~~~l~s~~~dg~i~vw~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (368)
..+.|.++.+- .+.++.+..+|.|.+.. ....... ....-.
T Consensus 74 ~~~~ivs~~yl~d~~~l~~~~~~Gdi~~~~~~~~~~~~~~E---------------------------------~VG~vd 120 (928)
T PF04762_consen 74 PNDKIVSFQYLADSESLCIALASGDIILVREDPDPDEDEIE---------------------------------IVGSVD 120 (928)
T ss_pred CCCcEEEEEeccCCCcEEEEECCceEEEEEccCCCCCceeE---------------------------------EEEEEc
Confidence 45678888876 66788889999999983 3322211 111156
Q ss_pred CCEeEEEEcCCCCEEEEEeCCCcEEEEEccCCeEEEE------------------------eec----------------
Q 047325 155 DAVSCMSLDQDCGLLYTASWDRTFKVWRISDSKCLES------------------------VSA---------------- 194 (368)
Q Consensus 155 ~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~------------------------~~~---------------- 194 (368)
..|.+++|+||+..|+..+.++++.+.+- +..++.. |.|
T Consensus 121 ~GI~a~~WSPD~Ella~vT~~~~l~~mt~-~fd~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~ 199 (928)
T PF04762_consen 121 SGILAASWSPDEELLALVTGEGNLLLMTR-DFDPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVP 199 (928)
T ss_pred CcEEEEEECCCcCEEEEEeCCCEEEEEec-cceEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCC
Confidence 78999999999999999999999888752 2211111 100
Q ss_pred --------CCCceEEEEeCCCC-eEEEEcC------CCeEEEEEcCCCCCCcccccceeeccccccEEEEEEcCCCCEEE
Q 047325 195 --------HDDAVNSVVSSSEG-LIFTGSA------DGTVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSSSRSIVY 259 (368)
Q Consensus 195 --------~~~~v~~~~~~~~~-~l~~~~~------dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~ 259 (368)
....-..++|-.|| ++++.+- -+.+++|+-+.. ....-..-.+--.+++|.|.|+++|
T Consensus 200 ~~d~~~~s~dd~~~~ISWRGDG~yFAVss~~~~~~~~R~iRVy~ReG~-------L~stSE~v~gLe~~l~WrPsG~lIA 272 (928)
T PF04762_consen 200 KVDEGKLSWDDGRVRISWRGDGEYFAVSSVEPETGSRRVIRVYSREGE-------LQSTSEPVDGLEGALSWRPSGNLIA 272 (928)
T ss_pred ccccCccccCCCceEEEECCCCcEEEEEEEEcCCCceeEEEEECCCce-------EEeccccCCCccCCccCCCCCCEEE
Confidence 12234568899999 7776653 257999997621 2222222233345789999999999
Q ss_pred EecC---CCcEEEEeCCCccccce-eee--ccceEE--EEEEeCCCEEEEeeCCCeEEEEecCCCceeeeEeeecc-ccC
Q 047325 260 CGSS---DGLVNFWEREKQLSHGG-VLK--GHKLAV--LCLAAAGKLVFSGSADKTICVWRRDGAIHTCLSVLTGH-TGP 330 (368)
Q Consensus 260 ~~~~---dg~i~i~d~~~~~~~~~-~~~--~~~~~~--~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h-~~~ 330 (368)
+.-. ...|.+|.-.. ..... .+. .....+ +.++.|+..|+..-.|. |.+|-..+.-+...+++.-. ...
T Consensus 273 ~~q~~~~~~~VvFfErNG-LrhgeF~l~~~~~~~~v~~l~Wn~ds~iLAv~~~~~-vqLWt~~NYHWYLKqei~~~~~~~ 350 (928)
T PF04762_consen 273 SSQRLPDRHDVVFFERNG-LRHGEFTLRFDPEEEKVIELAWNSDSEILAVWLEDR-VQLWTRSNYHWYLKQEIRFSSSES 350 (928)
T ss_pred EEEEcCCCcEEEEEecCC-cEeeeEecCCCCCCceeeEEEECCCCCEEEEEecCC-ceEEEeeCCEEEEEEEEEccCCCC
Confidence 8764 34577777442 22211 111 223344 55556899999977665 99998887766666666533 334
Q ss_pred eeEEEEecCCe
Q 047325 331 VKCLAVEEDRD 341 (368)
Q Consensus 331 v~~l~~~~~~~ 341 (368)
+..+.|+|...
T Consensus 351 ~~~~~Wdpe~p 361 (928)
T PF04762_consen 351 VNFVKWDPEKP 361 (928)
T ss_pred CCceEECCCCC
Confidence 56699999754
No 297
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=98.95 E-value=9.7e-07 Score=76.20 Aligned_cols=228 Identities=14% Similarity=0.141 Sum_probs=134.6
Q ss_pred EecCCEEEEccCCCcEEEEcCCcceeccc--CCC----------CC-eeEEEEeCCEEEEEeCCCeEEEEeecCCCcccc
Q 047325 51 AASKDLLYTGSDSKNIRVWKNLKEFCGFK--ASS----------GL-VKAIVISGEKIFTGHQDGKIRVWKISPKNQSVH 117 (368)
Q Consensus 51 ~~~~~~l~s~~~dg~i~iw~~~~~~~~~~--~~~----------~~-v~~~~~~~~~l~s~~~dg~i~vw~~~~~~~~~~ 117 (368)
...++.+++++.+|.+.-+|..+.....+ ... .. ...+...++.++.++.+|.+..+|.++++....
T Consensus 66 vv~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~v~~~~g~l~ald~~tG~~~W~ 145 (394)
T PRK11138 66 AVAYNKVYAADRAGLVKALDADTGKEIWSVDLSEKDGWFSKNKSALLSGGVTVAGGKVYIGSEKGQVYALNAEDGEVAWQ 145 (394)
T ss_pred EEECCEEEEECCCCeEEEEECCCCcEeeEEcCCCcccccccccccccccccEEECCEEEEEcCCCEEEEEECCCCCCccc
Confidence 34567777788888888888764322211 110 01 112445578888999999999999999987665
Q ss_pred ccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcCCCCEEEEEeCCCcEEEEEccCCeEEEEeecCCC
Q 047325 118 KRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCGLLYTASWDRTFKVWRISDSKCLESVSAHDD 197 (368)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~ 197 (368)
....... ...++ . .+..++.+..++.+..+|..+|+.+-.+.....
T Consensus 146 ~~~~~~~----------------------------~ssP~----v--~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~ 191 (394)
T PRK11138 146 TKVAGEA----------------------------LSRPV----V--SDGLVLVHTSNGMLQALNESDGAVKWTVNLDVP 191 (394)
T ss_pred ccCCCce----------------------------ecCCE----E--ECCEEEEECCCCEEEEEEccCCCEeeeecCCCC
Confidence 5432100 11111 1 134677778889999999999998877654211
Q ss_pred ce-----EEEEeCCCCeEEEEcCCCeEEEEEcCCCCCCcccccceeecccc-ccEEEEEEcC--CCCEEEEecCCCcEEE
Q 047325 198 AV-----NSVVSSSEGLIFTGSADGTVKVWKREQHGKGTKHSLAQTLLKQE-CAVTALVVSS--SRSIVYCGSSDGLVNF 269 (368)
Q Consensus 198 ~v-----~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~-~~i~~~~~~~--~~~~l~~~~~dg~i~i 269 (368)
.+ .+-.. .++.++.++.+|.+..+|..++................ .....+..+| .+..++.++.+|.+..
T Consensus 192 ~~~~~~~~sP~v-~~~~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~l~a 270 (394)
T PRK11138 192 SLTLRGESAPAT-AFGGAIVGGDNGRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAYNGNLVA 270 (394)
T ss_pred cccccCCCCCEE-ECCEEEEEcCCCEEEEEEccCChhhheeccccCCCccchhcccccCCCcEEECCEEEEEEcCCeEEE
Confidence 11 00111 13467778889999999987764322211100000000 0011111122 2456777778899999
Q ss_pred EeCCCccccceeeeccceEEEEEEeCCCEEEEeeCCCeEEEEecCCC
Q 047325 270 WEREKQLSHGGVLKGHKLAVLCLAAAGKLVFSGSADKTICVWRRDGA 316 (368)
Q Consensus 270 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~ 316 (368)
+|..+++.......+. ...+...+..|+.++.+|.+..+|..++
T Consensus 271 ld~~tG~~~W~~~~~~---~~~~~~~~~~vy~~~~~g~l~ald~~tG 314 (394)
T PRK11138 271 LDLRSGQIVWKREYGS---VNDFAVDGGRIYLVDQNDRVYALDTRGG 314 (394)
T ss_pred EECCCCCEEEeecCCC---ccCcEEECCEEEEEcCCCeEEEEECCCC
Confidence 9999876653322211 1123346778888889999999988766
No 298
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=98.95 E-value=1.1e-06 Score=70.32 Aligned_cols=211 Identities=14% Similarity=0.104 Sum_probs=125.8
Q ss_pred CCcEEEEcCCccee--cccC--CCCCeeEEEE-eCCEEEEEeCCCeEEEEeecCCCccccccCCccccceeeeeccCCCC
Q 047325 63 SKNIRVWKNLKEFC--GFKA--SSGLVKAIVI-SGEKIFTGHQDGKIRVWKISPKNQSVHKRAGTLPTLKDIFKSSIKPS 137 (368)
Q Consensus 63 dg~i~iw~~~~~~~--~~~~--~~~~v~~~~~-~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (368)
+|+|..||..+... .... ......+... .++.+++++.++.|..||..+++..........
T Consensus 2 ~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~~~~-------------- 67 (238)
T PF13360_consen 2 DGTLSALDPRTGKELWSYDLGPGIGGPVATAVPDGGRVYVASGDGNLYALDAKTGKVLWRFDLPGP-------------- 67 (238)
T ss_dssp TSEEEEEETTTTEEEEEEECSSSCSSEEETEEEETTEEEEEETTSEEEEEETTTSEEEEEEECSSC--------------
T ss_pred CCEEEEEECCCCCEEEEEECCCCCCCccceEEEeCCEEEEEcCCCEEEEEECCCCCEEEEeecccc--------------
Confidence 67788888754322 2211 1122222233 688899999999999999999886555443211
Q ss_pred ceeEecccceeeeeecCCCEeEEEEcCCCCEEEEEeCCCcEEEEEccCCeEEEEe-ecCCC-----ceEEEEeCCCCeEE
Q 047325 138 NYIEVRRHRTALWIRHSDAVSCMSLDQDCGLLYTASWDRTFKVWRISDSKCLESV-SAHDD-----AVNSVVSSSEGLIF 211 (368)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~-~~~~~-----~v~~~~~~~~~~l~ 211 (368)
.... . ...+..+++++.++.|..+|..+|+.+... ..... ......+. ++.++
T Consensus 68 ---------------~~~~---~--~~~~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~-~~~~~ 126 (238)
T PF13360_consen 68 ---------------ISGA---P--VVDGGRVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVD-GDRLY 126 (238)
T ss_dssp ---------------GGSG---E--EEETTEEEEEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEE-TTEEE
T ss_pred ---------------ccce---e--eecccccccccceeeeEecccCCcceeeeeccccccccccccccCceEe-cCEEE
Confidence 0011 1 113456777778889999999999998874 32211 11122222 34788
Q ss_pred EEcCCCeEEEEEcCCCCCCcccccceeecccc--c------cEEEEEEcCCCCEEEEecCCCcEEEEeCCCccccceeee
Q 047325 212 TGSADGTVKVWKREQHGKGTKHSLAQTLLKQE--C------AVTALVVSSSRSIVYCGSSDGLVNFWEREKQLSHGGVLK 283 (368)
Q Consensus 212 ~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~--~------~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~ 283 (368)
++..++.|..+|++++...... ...... . .+..-....++ .++.+..++.+.-+|+++++... ...
T Consensus 127 ~~~~~g~l~~~d~~tG~~~w~~----~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~g~~~~~d~~tg~~~w-~~~ 200 (238)
T PF13360_consen 127 VGTSSGKLVALDPKTGKLLWKY----PVGEPRGSSPISSFSDINGSPVISDG-RVYVSSGDGRVVAVDLATGEKLW-SKP 200 (238)
T ss_dssp EEETCSEEEEEETTTTEEEEEE----ESSTT-SS--EEEETTEEEEEECCTT-EEEEECCTSSEEEEETTTTEEEE-EEC
T ss_pred EEeccCcEEEEecCCCcEEEEe----ecCCCCCCcceeeecccccceEEECC-EEEEEcCCCeEEEEECCCCCEEE-Eec
Confidence 8888999999999877431111 111101 1 11222222244 67777777754444999887552 222
Q ss_pred ccceEEEE-EEeCCCEEEEeeCCCeEEEEecCCC
Q 047325 284 GHKLAVLC-LAAAGKLVFSGSADKTICVWRRDGA 316 (368)
Q Consensus 284 ~~~~~~~~-~~~~~~~l~~~~~dg~i~iw~~~~~ 316 (368)
...... ...++..|+.++.++.|..||+.++
T Consensus 201 --~~~~~~~~~~~~~~l~~~~~~~~l~~~d~~tG 232 (238)
T PF13360_consen 201 --ISGIYSLPSVDGGTLYVTSSDGRLYALDLKTG 232 (238)
T ss_dssp --SS-ECECEECCCTEEEEEETTTEEEEEETTTT
T ss_pred --CCCccCCceeeCCEEEEEeCCCEEEEEECCCC
Confidence 222333 6678888888889999999999887
No 299
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=98.95 E-value=9.7e-06 Score=65.17 Aligned_cols=172 Identities=17% Similarity=0.163 Sum_probs=107.7
Q ss_pred EeEEEEc-CCCCEEEEEeCCCcEEEEEccCCeEEEEeec-----CCCceEEEEeCCCCeEEEE-cCC--------CeEEE
Q 047325 157 VSCMSLD-QDCGLLYTASWDRTFKVWRISDSKCLESVSA-----HDDAVNSVVSSSEGLIFTG-SAD--------GTVKV 221 (368)
Q Consensus 157 v~~~~~~-~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~-----~~~~v~~~~~~~~~~l~~~-~~d--------g~i~i 221 (368)
...+++. ++ ..++.+..+ .+.++|+.+++....... .....+.+++.++|.|..+ ... |.|..
T Consensus 42 ~~G~~~~~~~-g~l~v~~~~-~~~~~d~~~g~~~~~~~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~ 119 (246)
T PF08450_consen 42 PNGMAFDRPD-GRLYVADSG-GIAVVDPDTGKVTVLADLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYR 119 (246)
T ss_dssp EEEEEEECTT-SEEEEEETT-CEEEEETTTTEEEEEEEEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEE
T ss_pred CceEEEEccC-CEEEEEEcC-ceEEEecCCCcEEEEeeccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEE
Confidence 6677887 55 556666654 466669998865544443 3456889999999944444 322 55777
Q ss_pred EEcCCCCCCcccccceeeccccccEEEEEEcCCCCEEE-EecCCCcEEEEeCCCccc-c--ceee---eccc--eEEEEE
Q 047325 222 WKREQHGKGTKHSLAQTLLKQECAVTALVVSSSRSIVY-CGSSDGLVNFWEREKQLS-H--GGVL---KGHK--LAVLCL 292 (368)
Q Consensus 222 ~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~-~~~~dg~i~i~d~~~~~~-~--~~~~---~~~~--~~~~~~ 292 (368)
++.. . ........-...+.++|+|+++.|+ +-+..+.|..|++..... . ...+ .... ..-+++
T Consensus 120 ~~~~-~-------~~~~~~~~~~~pNGi~~s~dg~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~v 191 (246)
T PF08450_consen 120 IDPD-G-------KVTVVADGLGFPNGIAFSPDGKTLYVADSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAV 191 (246)
T ss_dssp EETT-S-------EEEEEEEEESSEEEEEEETTSSEEEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEE
T ss_pred ECCC-C-------eEEEEecCcccccceEECCcchheeecccccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceE
Confidence 7765 2 1222333345578999999998775 567778899999863222 1 1111 1111 223667
Q ss_pred EeCCCEEEEeeCCCeEEEEecCCCceeeeEeeeccccCeeEEEEe-cCCe
Q 047325 293 AAAGKLVFSGSADKTICVWRRDGAIHTCLSVLTGHTGPVKCLAVE-EDRD 341 (368)
Q Consensus 293 ~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~l~~~-~~~~ 341 (368)
..+|++.++....+.|.+++.+ + +.+..+.-....+++++|. ++..
T Consensus 192 D~~G~l~va~~~~~~I~~~~p~-G--~~~~~i~~p~~~~t~~~fgg~~~~ 238 (246)
T PF08450_consen 192 DSDGNLWVADWGGGRIVVFDPD-G--KLLREIELPVPRPTNCAFGGPDGK 238 (246)
T ss_dssp BTTS-EEEEEETTTEEEEEETT-S--CEEEEEE-SSSSEEEEEEESTTSS
T ss_pred cCCCCEEEEEcCCCEEEEECCC-c--cEEEEEcCCCCCEEEEEEECCCCC
Confidence 7789888888889999999876 3 4555555445589999995 5544
No 300
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=98.91 E-value=3.3e-06 Score=65.56 Aligned_cols=168 Identities=11% Similarity=0.148 Sum_probs=105.8
Q ss_pred EeEEEEcCCCCEEEEEeCCCcEEEEEccCCeEEEEeecC-------CCceEEEEeCCCC-------eEEEEcCCCeEEEE
Q 047325 157 VSCMSLDQDCGLLYTASWDRTFKVWRISDSKCLESVSAH-------DDAVNSVVSSSEG-------LIFTGSADGTVKVW 222 (368)
Q Consensus 157 v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~-------~~~v~~~~~~~~~-------~l~~~~~dg~i~i~ 222 (368)
=+-++|+||+..||.+...|+|+++|+.. ..+..+... ..+|..+.|.+.. .|++-..+|.++-|
T Consensus 46 WRkl~WSpD~tlLa~a~S~G~i~vfdl~g-~~lf~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy 124 (282)
T PF15492_consen 46 WRKLAWSPDCTLLAYAESTGTIRVFDLMG-SELFVIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSY 124 (282)
T ss_pred heEEEECCCCcEEEEEcCCCeEEEEeccc-ceeEEcCcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeE
Confidence 35689999999999999999999999964 333344321 2456666554321 67777888888888
Q ss_pred EcCCCCCCccccccee--e-ccccccEEEEEEcCCCCEEEEecCC-C----------cEEEEeCCCccc-----------
Q 047325 223 KREQHGKGTKHSLAQT--L-LKQECAVTALVVSSSRSIVYCGSSD-G----------LVNFWEREKQLS----------- 277 (368)
Q Consensus 223 d~~~~~~~~~~~~~~~--~-~~~~~~i~~~~~~~~~~~l~~~~~d-g----------~i~i~d~~~~~~----------- 277 (368)
-+..+.. ........ + ......|.++.++|..++|+.|+.. . -+.-|.+-+...
T Consensus 125 ~vs~gt~-q~y~e~hsfsf~~~yp~Gi~~~vy~p~h~LLlVgG~~~~~~~~s~a~~~GLtaWRiL~~~Pyyk~v~~~~~~ 203 (282)
T PF15492_consen 125 LVSVGTN-QGYQENHSFSFSSHYPHGINSAVYHPKHRLLLVGGCEQNQDGMSKASSCGLTAWRILSDSPYYKQVTSSEDD 203 (282)
T ss_pred EEEcccC-CcceeeEEEEecccCCCceeEEEEcCCCCEEEEeccCCCCCccccccccCceEEEEcCCCCcEEEccccCcc
Confidence 7643211 11112222 2 2246789999999999988877532 1 144454211100
Q ss_pred ---------cce-----ee-----eccceEEEEEEeCCCEEEEeeCCCeEEEEecCCCceeeeEeeeccc
Q 047325 278 ---------HGG-----VL-----KGHKLAVLCLAAAGKLVFSGSADKTICVWRRDGAIHTCLSVLTGHT 328 (368)
Q Consensus 278 ---------~~~-----~~-----~~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~ 328 (368)
... .+ .......++++|||..|++...+|.|.+|++..- .....+..++
T Consensus 204 ~~~~~~~~~~~~~~~~~~fs~~~~~~d~i~kmSlSPdg~~La~ih~sG~lsLW~iPsL--~~~~~W~~~e 271 (282)
T PF15492_consen 204 ITASSKRRGLLRIPSFKFFSRQGQEQDGIFKMSLSPDGSLLACIHFSGSLSLWEIPSL--RLQRSWKQDE 271 (282)
T ss_pred ccccccccceeeccceeeeeccccCCCceEEEEECCCCCEEEEEEcCCeEEEEecCcc--hhhcccchhh
Confidence 000 00 1122344788999999999999999999998765 4444444333
No 301
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=98.91 E-value=9.5e-06 Score=65.21 Aligned_cols=197 Identities=11% Similarity=0.051 Sum_probs=123.0
Q ss_pred EEEecC---CEEEEccCCCcEEEEcCCcceecccCCCCCeeEEEEe--CCEEEEEeCCCeEEEEeecCCCccccccCCcc
Q 047325 49 SLAASK---DLLYTGSDSKNIRVWKNLKEFCGFKASSGLVKAIVIS--GEKIFTGHQDGKIRVWKISPKNQSVHKRAGTL 123 (368)
Q Consensus 49 ~~~~~~---~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~ 123 (368)
+..|++ .++++--..+.|..|+............. ...+.+. +..|+.+..++. .++|+.+++.........
T Consensus 4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~~~~~~-~~G~~~~~~~g~l~v~~~~~~-~~~d~~~g~~~~~~~~~~- 80 (246)
T PF08450_consen 4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEVIDLPG-PNGMAFDRPDGRLYVADSGGI-AVVDPDTGKVTVLADLPD- 80 (246)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTTTEEEEEESSS-EEEEEEECTTSEEEEEETTCE-EEEETTTTEEEEEEEEET-
T ss_pred ceEEECCCCEEEEEEcCCCEEEEEECCCCeEEEEecCC-CceEEEEccCCEEEEEEcCce-EEEecCCCcEEEEeeccC-
Confidence 455653 37777777899999998766544322222 5555665 677777776555 445877764322211100
Q ss_pred ccceeeeeccCCCCceeEecccceeeeee-cCCCEeEEEEcCCCCEEEEEeCC--------CcEEEEEccCCeEEEEeec
Q 047325 124 PTLKDIFKSSIKPSNYIEVRRHRTALWIR-HSDAVSCMSLDQDCGLLYTASWD--------RTFKVWRISDSKCLESVSA 194 (368)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~d--------~~i~iwd~~~~~~~~~~~~ 194 (368)
.. .....+.+++.|+|++.++.... |.|..++.. ++......
T Consensus 81 ---------------------------~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~- 131 (246)
T PF08450_consen 81 ---------------------------GGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVAD- 131 (246)
T ss_dssp ---------------------------TCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEE-
T ss_pred ---------------------------CCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEEEec-
Confidence 00 23457889999999977776543 457777776 55444443
Q ss_pred CCCceEEEEeCCCC-eE-EEEcCCCeEEEEEcCCCCC-CcccccceeeccccccEEEEEEcCCCCEEEEecCCCcEEEEe
Q 047325 195 HDDAVNSVVSSSEG-LI-FTGSADGTVKVWKREQHGK-GTKHSLAQTLLKQECAVTALVVSSSRSIVYCGSSDGLVNFWE 271 (368)
Q Consensus 195 ~~~~v~~~~~~~~~-~l-~~~~~dg~i~i~d~~~~~~-~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d 271 (368)
.-...+.++|+|++ .| ++-+..+.|..+++..... .........+....+..-.+++..+|++.++....+.|.++|
T Consensus 132 ~~~~pNGi~~s~dg~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~ 211 (246)
T PF08450_consen 132 GLGFPNGIAFSPDGKTLYVADSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVVFD 211 (246)
T ss_dssp EESSEEEEEEETTSSEEEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEE
T ss_pred CcccccceEECCcchheeecccccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEEEC
Confidence 34557899999999 44 5667889999999975432 111112222233334588899999999888888889999999
Q ss_pred CCCcccc
Q 047325 272 REKQLSH 278 (368)
Q Consensus 272 ~~~~~~~ 278 (368)
.+ ++..
T Consensus 212 p~-G~~~ 217 (246)
T PF08450_consen 212 PD-GKLL 217 (246)
T ss_dssp TT-SCEE
T ss_pred CC-ccEE
Confidence 88 4444
No 302
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.89 E-value=1e-07 Score=83.49 Aligned_cols=188 Identities=12% Similarity=0.113 Sum_probs=128.5
Q ss_pred CCcEEEEEecCCEEEEccCCCcEEEEcCCcceecccCCCCCeeEEEEeCCEEEEEeCCCeEEEEeecCCCccccccCCcc
Q 047325 44 EGHIYSLAASKDLLYTGSDSKNIRVWKNLKEFCGFKASSGLVKAIVISGEKIFTGHQDGKIRVWKISPKNQSVHKRAGTL 123 (368)
Q Consensus 44 ~~~i~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~v~~~~~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~ 123 (368)
.+.+.|.+++..+|+-|..+|.|++.+..........|... ...|.++++|+.||+|.|-.+.+.+......
T Consensus 39 ~D~is~~av~~~~~~~GtH~g~v~~~~~~~~~~~~~~~s~~----~~~Gey~asCS~DGkv~I~sl~~~~~~~~~d---- 110 (846)
T KOG2066|consen 39 NDAISCCAVHDKFFALGTHRGAVYLTTCQGNPKTNFDHSSS----ILEGEYVASCSDDGKVVIGSLFTDDEITQYD---- 110 (846)
T ss_pred hhHHHHHHhhcceeeeccccceEEEEecCCccccccccccc----ccCCceEEEecCCCcEEEeeccCCccceeEe----
Confidence 45688889999999999999999999977554544455444 3449999999999999999988776543322
Q ss_pred ccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcCC-----CCEEEEEeCCCcEEEEEcc--CCeEEEEeecCC
Q 047325 124 PTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQD-----CGLLYTASWDRTFKVWRIS--DSKCLESVSAHD 196 (368)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-----~~~l~~~~~d~~i~iwd~~--~~~~~~~~~~~~ 196 (368)
...++.+++++|+ .+.+++|+.-| +.++.-+ ..+....+....
T Consensus 111 -----------------------------f~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~~~e 160 (846)
T KOG2066|consen 111 -----------------------------FKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVVLSEGE 160 (846)
T ss_pred -----------------------------cCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccceeeecCc
Confidence 4578899999997 56899999888 7777532 111122455677
Q ss_pred CceEEEEeCCCCeEEEEcCCCeEEEEEcCCCCCCcccccceeeccccccEEEEEEcCCCCEEEEecCCCcEEEEeCC
Q 047325 197 DAVNSVVSSSEGLIFTGSADGTVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSSSRSIVYCGSSDGLVNFWERE 273 (368)
Q Consensus 197 ~~v~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~ 273 (368)
++|.++.|..+ +++-..|-.|++||..........++.......+.....+.|.++. .|+.|=. .+|++..++
T Consensus 161 G~I~~i~W~g~--lIAWand~Gv~vyd~~~~~~l~~i~~p~~~~R~e~fpphl~W~~~~-~LVIGW~-d~v~i~~I~ 233 (846)
T KOG2066|consen 161 GPIHSIKWRGN--LIAWANDDGVKVYDTPTRQRLTNIPPPSQSVRPELFPPHLHWQDED-RLVIGWG-DSVKICSIK 233 (846)
T ss_pred cceEEEEecCc--EEEEecCCCcEEEeccccceeeccCCCCCCCCcccCCCceEecCCC-eEEEecC-CeEEEEEEe
Confidence 89999999643 4445556669999997664422222222222223334456777654 4555543 468888877
No 303
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=98.89 E-value=6.8e-07 Score=69.23 Aligned_cols=190 Identities=15% Similarity=0.184 Sum_probs=108.2
Q ss_pred EEEEecCC--EEEEccCCCcEEEEcCCc-ceeccc-------CCCCCeeEEEEe--------CCEEEEEeCCCeEEEEee
Q 047325 48 YSLAASKD--LLYTGSDSKNIRVWKNLK-EFCGFK-------ASSGLVKAIVIS--------GEKIFTGHQDGKIRVWKI 109 (368)
Q Consensus 48 ~~~~~~~~--~l~s~~~dg~i~iw~~~~-~~~~~~-------~~~~~v~~~~~~--------~~~l~s~~~dg~i~vw~~ 109 (368)
..++|+++ +||.+...|+|+++|+.. .+.... .-...|..+.|. ...|+.-..+|.++-|-+
T Consensus 47 Rkl~WSpD~tlLa~a~S~G~i~vfdl~g~~lf~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~v 126 (282)
T PF15492_consen 47 RKLAWSPDCTLLAYAESTGTIRVFDLMGSELFVIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLV 126 (282)
T ss_pred eEEEECCCCcEEEEEcCCCeEEEEecccceeEEcCcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeEEE
Confidence 35677766 999999999999999863 222221 123456666664 225677777888887776
Q ss_pred cCCCccccccCCccccceeeeeccCCCCceeEecccceeee-eecCCCEeEEEEcCCCCEEEEEeCCCcEEEEEccCCeE
Q 047325 110 SPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALW-IRHSDAVSCMSLDQDCGLLYTASWDRTFKVWRISDSKC 188 (368)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~ 188 (368)
..+........ ....+ ..+...|.++.++|..++|++|+.... +++.
T Consensus 127 s~gt~q~y~e~-------------------------hsfsf~~~yp~Gi~~~vy~p~h~LLlVgG~~~~------~~~~- 174 (282)
T PF15492_consen 127 SVGTNQGYQEN-------------------------HSFSFSSHYPHGINSAVYHPKHRLLLVGGCEQN------QDGM- 174 (282)
T ss_pred EcccCCcceee-------------------------EEEEecccCCCceeEEEEcCCCCEEEEeccCCC------CCcc-
Confidence 43321111000 00011 115779999999999888888875432 1110
Q ss_pred EEEeecCCCceEEEEeCCCC---eEEEEcCCCeE------EEEEcCCCCCCcccccceeeccccccEEEEEEcCCCCEEE
Q 047325 189 LESVSAHDDAVNSVVSSSEG---LIFTGSADGTV------KVWKREQHGKGTKHSLAQTLLKQECAVTALVVSSSRSIVY 259 (368)
Q Consensus 189 ~~~~~~~~~~v~~~~~~~~~---~l~~~~~dg~i------~i~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~ 259 (368)
-++....+++-....+. ..++...|+.. .+|.+-.. ............|..+..+|||+.|+
T Consensus 175 ---s~a~~~GLtaWRiL~~~Pyyk~v~~~~~~~~~~~~~~~~~~~~~~------~~fs~~~~~~d~i~kmSlSPdg~~La 245 (282)
T PF15492_consen 175 ---SKASSCGLTAWRILSDSPYYKQVTSSEDDITASSKRRGLLRIPSF------KFFSRQGQEQDGIFKMSLSPDGSLLA 245 (282)
T ss_pred ---ccccccCceEEEEcCCCCcEEEccccCccccccccccceeeccce------eeeeccccCCCceEEEEECCCCCEEE
Confidence 11122233333332222 33333333221 12221110 01111233567899999999999999
Q ss_pred EecCCCcEEEEeCCCcccc
Q 047325 260 CGSSDGLVNFWEREKQLSH 278 (368)
Q Consensus 260 ~~~~dg~i~i~d~~~~~~~ 278 (368)
+...+|.|.+|++.+-...
T Consensus 246 ~ih~sG~lsLW~iPsL~~~ 264 (282)
T PF15492_consen 246 CIHFSGSLSLWEIPSLRLQ 264 (282)
T ss_pred EEEcCCeEEEEecCcchhh
Confidence 9999999999999864433
No 304
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=98.88 E-value=5.7e-08 Score=86.20 Aligned_cols=179 Identities=8% Similarity=0.066 Sum_probs=125.7
Q ss_pred CCCEEEEEeCCCcEEEEEccCCeEEEEeecCCCceEEEEeCCCCeEEEEcCCCeEEEEEcCCCCCCcccccceeeccccc
Q 047325 165 DCGLLYTASWDRTFKVWRISDSKCLESVSAHDDAVNSVVSSSEGLIFTGSADGTVKVWKREQHGKGTKHSLAQTLLKQEC 244 (368)
Q Consensus 165 ~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~ 244 (368)
++..++.|+....+..+|+++.+..+...-..+.|.-++.+ +..+++|...|+|.+-|.++. .....+..|.+
T Consensus 146 ~~~~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a~~v~imR~N-nr~lf~G~t~G~V~LrD~~s~------~~iht~~aHs~ 218 (1118)
T KOG1275|consen 146 GPSTLIMGGLQEKLIHIDLNTEKETRTTNVSASGVTIMRYN-NRNLFCGDTRGTVFLRDPNSF------ETIHTFDAHSG 218 (1118)
T ss_pred CCcceeecchhhheeeeecccceeeeeeeccCCceEEEEec-CcEEEeecccceEEeecCCcC------ceeeeeecccc
Confidence 44578888888889999999988877776555556555532 238999999999999999876 46788899999
Q ss_pred cEEEEEEcCCCCEEEEecC---------CCcEEEEeCCCccccceeeeccceEEEEEEeC-CCEEEEeeCCCeEEEEecC
Q 047325 245 AVTALVVSSSRSIVYCGSS---------DGLVNFWEREKQLSHGGVLKGHKLAVLCLAAA-GKLVFSGSADKTICVWRRD 314 (368)
Q Consensus 245 ~i~~~~~~~~~~~l~~~~~---------dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~~~dg~i~iw~~~ 314 (368)
.|..+.. .|+.|++++. |.-|++||++..+.+.-....-......|.|. ...+++++..|...+-|..
T Consensus 219 siSDfDv--~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~~~P~flrf~Psl~t~~~V~S~sGq~q~vd~~ 296 (1118)
T KOG1275|consen 219 SISDFDV--QGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFPYGPQFLRFHPSLTTRLAVTSQSGQFQFVDTA 296 (1118)
T ss_pred ceeeeec--cCCeEEEeecccccccccccchhhhhhhhhhhccCCcccccCchhhhhcccccceEEEEecccceeecccc
Confidence 9887665 6888988875 45689999997554422221122234556664 6678888999999999832
Q ss_pred CCce--eeeEeeeccccCeeEEEEecCCeeeecCCcceEE
Q 047325 315 GAIH--TCLSVLTGHTGPVKCLAVEEDRDSSSSTSSCAQR 352 (368)
Q Consensus 315 ~~~~--~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~ 352 (368)
+... ..+..+......+..+.++++++.+|.++..+.+
T Consensus 297 ~lsNP~~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v 336 (1118)
T KOG1275|consen 297 TLSNPPAGVKMVNPNGSGISAFDISSNGDALAFGDHEGHV 336 (1118)
T ss_pred ccCCCccceeEEccCCCcceeEEecCCCceEEEecccCcE
Confidence 2111 2233333445569999999999977766655444
No 305
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=98.88 E-value=5.4e-08 Score=86.37 Aligned_cols=182 Identities=15% Similarity=0.177 Sum_probs=133.8
Q ss_pred CCEEEEccCCCcEEEEcCCcce--ecccCCCCCeeEEEEeCCEEEEEeCCCeEEEEeecCCCccccccCCccccceeeee
Q 047325 54 KDLLYTGSDSKNIRVWKNLKEF--CGFKASSGLVKAIVISGEKIFTGHQDGKIRVWKISPKNQSVHKRAGTLPTLKDIFK 131 (368)
Q Consensus 54 ~~~l~s~~~dg~i~iw~~~~~~--~~~~~~~~~v~~~~~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~ 131 (368)
++.++-|+-...+..+|+.+.. ....-..+.|.-++.+++++.+|...|+|.+-|.++.+...
T Consensus 147 ~~~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a~~v~imR~Nnr~lf~G~t~G~V~LrD~~s~~~ih--------------- 211 (1118)
T KOG1275|consen 147 PSTLIMGGLQEKLIHIDLNTEKETRTTNVSASGVTIMRYNNRNLFCGDTRGTVFLRDPNSFETIH--------------- 211 (1118)
T ss_pred CcceeecchhhheeeeecccceeeeeeeccCCceEEEEecCcEEEeecccceEEeecCCcCceee---------------
Confidence 4466677777777777776442 23333344588888889999999999999999998776433
Q ss_pred ccCCCCceeEecccceeeeeecCCCEeEEEEcCCCCEEEEEeC---------CCcEEEEEccCCeEEEEeecCCCceEEE
Q 047325 132 SSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCGLLYTASW---------DRTFKVWRISDSKCLESVSAHDDAVNSV 202 (368)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---------d~~i~iwd~~~~~~~~~~~~~~~~v~~~ 202 (368)
.+..|.+.|.++.. .|+.|++||. |..|++||++..+.+.-+..+.++ .-+
T Consensus 212 -----------------t~~aHs~siSDfDv--~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~~~P-~fl 271 (1118)
T KOG1275|consen 212 -----------------TFDAHSGSISDFDV--QGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFPYGP-QFL 271 (1118)
T ss_pred -----------------eeeccccceeeeec--cCCeEEEeecccccccccccchhhhhhhhhhhccCCcccccCc-hhh
Confidence 23349998887766 5778999875 557899999988877777666554 556
Q ss_pred EeCCCC--eEEEEcCCCeEEEEEcCCCCCCcccccceeeccccccEEEEEEcCCCCEEEEecCCCcEEEEeC
Q 047325 203 VSSSEG--LIFTGSADGTVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSSSRSIVYCGSSDGLVNFWER 272 (368)
Q Consensus 203 ~~~~~~--~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~ 272 (368)
.|+|.- .+++++..|...+-|.....+. ..-..........+..++++++++.++.|..+|.|.+|.-
T Consensus 272 rf~Psl~t~~~V~S~sGq~q~vd~~~lsNP--~~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa~ 341 (1118)
T KOG1275|consen 272 RFHPSLTTRLAVTSQSGQFQFVDTATLSNP--PAGVKMVNPNGSGISAFDISSNGDALAFGDHEGHVNLWAD 341 (1118)
T ss_pred hhcccccceEEEEecccceeeccccccCCC--ccceeEEccCCCcceeEEecCCCceEEEecccCcEeeecC
Confidence 788865 8999999999999994432220 0112333444556999999999999999999999999973
No 306
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=98.84 E-value=2.1e-06 Score=74.59 Aligned_cols=135 Identities=10% Similarity=0.148 Sum_probs=91.1
Q ss_pred cEEEEEecCCEEEEccCCCcEEEEcCCccee---cccCCCCCeeEEEEe--CCEEEEEeCCCeEEEEeecCCCccccccC
Q 047325 46 HIYSLAASKDLLYTGSDSKNIRVWKNLKEFC---GFKASSGLVKAIVIS--GEKIFTGHQDGKIRVWKISPKNQSVHKRA 120 (368)
Q Consensus 46 ~i~~~~~~~~~l~s~~~dg~i~iw~~~~~~~---~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~vw~~~~~~~~~~~~~ 120 (368)
..+|++-..++++.|+.-|.+++++-..... ...+..+.+..+..+ ..++|.|+..|.|.++-++..........
T Consensus 37 ~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~~~~~~ 116 (726)
T KOG3621|consen 37 KLTCVDATEEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELPRDLDYV 116 (726)
T ss_pred EEEEeecCCceEEEecccceEEEEecCchhhhcccccCccceEEEEEecchhHhhhhhcCCceEEeehhhccCCCcceee
Confidence 4677888889999999999999999764322 222334444455555 66788888899999998876432211111
Q ss_pred CccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcCCCCEEEEEeCCCcEEEEEccCC----eEEEEeecCC
Q 047325 121 GTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCGLLYTASWDRTFKVWRISDS----KCLESVSAHD 196 (368)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~----~~~~~~~~~~ 196 (368)
... -..|...|++++|++++..+++|...|.|.+-.+.+. ...+.+-...
T Consensus 117 t~~--------------------------d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s~~~~~~~~q~il~~d 170 (726)
T KOG3621|consen 117 TPC--------------------------DKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDSRQAFLSKSQEILSED 170 (726)
T ss_pred ccc--------------------------cccCCceEEEEEecccccEEeecCCCceEEEEEechhhhhccccceeeccC
Confidence 000 0118899999999999999999999999999888762 1122223345
Q ss_pred CceEEEEeCC
Q 047325 197 DAVNSVVSSS 206 (368)
Q Consensus 197 ~~v~~~~~~~ 206 (368)
..|-.+....
T Consensus 171 s~IVQlD~~q 180 (726)
T KOG3621|consen 171 SEIVQLDYLQ 180 (726)
T ss_pred cceEEeeccc
Confidence 5666666543
No 307
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=98.83 E-value=9.3e-08 Score=76.99 Aligned_cols=151 Identities=13% Similarity=0.198 Sum_probs=100.8
Q ss_pred CCEEEEEeCCCeEEEEeecCCCccccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcCCCCEEEE
Q 047325 92 GEKIFTGHQDGKIRVWKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCGLLYT 171 (368)
Q Consensus 92 ~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~ 171 (368)
+++++.+..+....++++....+...... . ..-...-+.+.+..+...+..
T Consensus 74 ~~llAv~~~~K~~~~f~~~~~~~~~kl~~--------------------------~---~~v~~~~~ai~~~~~~~sv~v 124 (390)
T KOG3914|consen 74 GRLVAVATSSKQRAVFDYRENPKGAKLLD--------------------------V---SCVPKRPTAISFIREDTSVLV 124 (390)
T ss_pred ceEEEEEeCCCceEEEEEecCCCcceeee--------------------------E---eecccCcceeeeeeccceEEE
Confidence 56777777777777887766553110000 0 001222334444444444444
Q ss_pred EeCCC---cEEEEEccCCeEEEEeecCCCceEEEEeCCCC-eEEEEcCCCeEEEEEcCCCCCCcccccceeeccccccEE
Q 047325 172 ASWDR---TFKVWRISDSKCLESVSAHDDAVNSVVSSSEG-LIFTGSADGTVKVWKREQHGKGTKHSLAQTLLKQECAVT 247 (368)
Q Consensus 172 ~~~d~---~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~i~ 247 (368)
+..-| .+.+|....+.+. .+-+|-..+..++++||+ .++++..|..|++-...... .......+|+.-|.
T Consensus 125 ~dkagD~~~~di~s~~~~~~~-~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f-----~IesfclGH~eFVS 198 (390)
T KOG3914|consen 125 ADKAGDVYSFDILSADSGRCE-PILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATF-----VIESFCLGHKEFVS 198 (390)
T ss_pred EeecCCceeeeeecccccCcc-hhhhhhhhhheeeecCCCCEEEEecCCceEEEEecCccc-----chhhhccccHhhee
Confidence 44434 4455554444443 344799999999999999 99999999999998775331 23344567999999
Q ss_pred EEEEcCCCCEEEEecCCCcEEEEeCCCcccc
Q 047325 248 ALVVSSSRSIVYCGSSDGLVNFWEREKQLSH 278 (368)
Q Consensus 248 ~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~ 278 (368)
.++.-++ ..|++++.|+++++||+++++.+
T Consensus 199 ~isl~~~-~~LlS~sGD~tlr~Wd~~sgk~L 228 (390)
T KOG3914|consen 199 TISLTDN-YLLLSGSGDKTLRLWDITSGKLL 228 (390)
T ss_pred eeeeccC-ceeeecCCCCcEEEEecccCCcc
Confidence 9999865 45899999999999999988766
No 308
>PRK04043 tolB translocation protein TolB; Provisional
Probab=98.82 E-value=6.9e-06 Score=70.87 Aligned_cols=189 Identities=6% Similarity=-0.015 Sum_probs=108.0
Q ss_pred CeeEEEEe--CCE-EEEEeC---CCeEEEEeecCCCccccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCE
Q 047325 84 LVKAIVIS--GEK-IFTGHQ---DGKIRVWKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAV 157 (368)
Q Consensus 84 ~v~~~~~~--~~~-l~s~~~---dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 157 (368)
....-.|+ |+. ++..+. +..|.++|+.+++...... ..+..
T Consensus 189 ~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~---------------------------------~~g~~ 235 (419)
T PRK04043 189 LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIAS---------------------------------SQGML 235 (419)
T ss_pred CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEec---------------------------------CCCcE
Confidence 56666776 553 554333 3458888887765322211 33445
Q ss_pred eEEEEcCCCCEEEEE-eC--CCcEEEEEccCCeEEEEeecCCCceEEEEeCCCC-eEE-EEcCCC--eEEEEEcCCCCCC
Q 047325 158 SCMSLDQDCGLLYTA-SW--DRTFKVWRISDSKCLESVSAHDDAVNSVVSSSEG-LIF-TGSADG--TVKVWKREQHGKG 230 (368)
Q Consensus 158 ~~~~~~~~~~~l~~~-~~--d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~-~~~~dg--~i~i~d~~~~~~~ 230 (368)
....|+|||+.++.. +. +..|.++|+.+++.. .+..+........|+||| .|+ +....+ .|.+.|+..+..
T Consensus 236 ~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~g~~~-~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~- 313 (419)
T PRK04043 236 VVSDVSKDGSKLLLTMAPKGQPDIYLYDTNTKTLT-QITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSV- 313 (419)
T ss_pred EeeEECCCCCEEEEEEccCCCcEEEEEECCCCcEE-EcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCe-
Confidence 567899999876544 33 346888898777643 343333333455899999 444 433334 577777765421
Q ss_pred cccccceeeccccccEEEEEEcCCCCEEEEecCC---------CcEEEEeCCCccccceeeeccceEEEEEEeCCCEEEE
Q 047325 231 TKHSLAQTLLKQECAVTALVVSSSRSIVYCGSSD---------GLVNFWEREKQLSHGGVLKGHKLAVLCLAAAGKLVFS 301 (368)
Q Consensus 231 ~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d---------g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 301 (368)
..+..... ....|+|+|+.|+..... ..|.+.|+.++.... ...........++|||+.|+.
T Consensus 314 ------~rlt~~g~--~~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~~~-LT~~~~~~~p~~SPDG~~I~f 384 (419)
T PRK04043 314 ------EQVVFHGK--NNSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYIRR-LTANGVNQFPRFSSDGGSIMF 384 (419)
T ss_pred ------EeCccCCC--cCceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCeEE-CCCCCCcCCeEECCCCCEEEE
Confidence 11111111 124899999988776543 368888887654321 111112223678999997766
Q ss_pred eeCC-C--eEEEEecCCC
Q 047325 302 GSAD-K--TICVWRRDGA 316 (368)
Q Consensus 302 ~~~d-g--~i~iw~~~~~ 316 (368)
...+ + .+.+.+++..
T Consensus 385 ~~~~~~~~~L~~~~l~g~ 402 (419)
T PRK04043 385 IKYLGNQSALGIIRLNYN 402 (419)
T ss_pred EEccCCcEEEEEEecCCC
Confidence 5543 2 3555666553
No 309
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=98.81 E-value=1.6e-05 Score=67.60 Aligned_cols=270 Identities=11% Similarity=0.134 Sum_probs=132.6
Q ss_pred CeeEEEEe--CCEEEEEeCCCeEEEEeecCCCccc-cccCCccccceeeeeccCCCCceeEecc----------cceeee
Q 047325 84 LVKAIVIS--GEKIFTGHQDGKIRVWKISPKNQSV-HKRAGTLPTLKDIFKSSIKPSNYIEVRR----------HRTALW 150 (368)
Q Consensus 84 ~v~~~~~~--~~~l~s~~~dg~i~vw~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~ 150 (368)
.|+.+.+. ...|+.|...|.|.+|.+...+... ............-+.....+....++.. .+...+
T Consensus 3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l~ 82 (395)
T PF08596_consen 3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTLL 82 (395)
T ss_dssp -EEEEEEETTTTEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEEE
T ss_pred eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhhe
Confidence 36667776 4578888888888888776554322 0000000000000000111222222211 122334
Q ss_pred eecCCCEeEEEEcCCCCEEEEEeCCCcEEEEEccCCeEEEEee--c------CCCceEEEEeC-----CCC----eEEEE
Q 047325 151 IRHSDAVSCMSLDQDCGLLYTASWDRTFKVWRISDSKCLESVS--A------HDDAVNSVVSS-----SEG----LIFTG 213 (368)
Q Consensus 151 ~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~--~------~~~~v~~~~~~-----~~~----~l~~~ 213 (368)
....++|++++.+ |=.+++.|..+|.+.|.|++....+..-. . ....++++.|. .|+ .+++|
T Consensus 83 ~~~~g~vtal~~S-~iGFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~vG 161 (395)
T PF08596_consen 83 DAKQGPVTALKNS-DIGFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLLVG 161 (395)
T ss_dssp ---S-SEEEEEE--BTSEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEEEEE
T ss_pred eccCCcEeEEecC-CCcEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccceEEEEE
Confidence 4467899999997 44599999999999999998887776532 1 23457777664 333 78999
Q ss_pred cCCCeEEEEEcCCC-CCCcccccceeeccccccEEEEE-EcCC--------------------CCEEEEecCCCcEEEEe
Q 047325 214 SADGTVKVWKREQH-GKGTKHSLAQTLLKQECAVTALV-VSSS--------------------RSIVYCGSSDGLVNFWE 271 (368)
Q Consensus 214 ~~dg~i~i~d~~~~-~~~~~~~~~~~~~~~~~~i~~~~-~~~~--------------------~~~l~~~~~dg~i~i~d 271 (368)
...|.+.+|.+... +.............+.+++..+. ++.+ -+.++....+..++++.
T Consensus 162 Tn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvSe~~irv~~ 241 (395)
T PF08596_consen 162 TNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVVSESDIRVFK 241 (395)
T ss_dssp ETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE-SSEEEEE-
T ss_pred eCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEEcccceEEEe
Confidence 99999999988632 11122222222234555665554 3221 02234444567799999
Q ss_pred CCCccccceeeecc-ceEEEEEE-----eCCCEEEEeeCCCeEEEEecCCCceeeeEeeec----cccCeeEEEEecCCe
Q 047325 272 REKQLSHGGVLKGH-KLAVLCLA-----AAGKLVFSGSADKTICVWRRDGAIHTCLSVLTG----HTGPVKCLAVEEDRD 341 (368)
Q Consensus 272 ~~~~~~~~~~~~~~-~~~~~~~~-----~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~----h~~~v~~l~~~~~~~ 341 (368)
..+.+.....+..+ .....++. ..+..|++-..+|.|++|.+..- +.+....- ....+....++++|+
T Consensus 242 ~~~~k~~~K~~~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~L--kei~~~~l~~~~d~~~~~~ssis~~Gd 319 (395)
T PF08596_consen 242 PPKSKGAHKSFDDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSL--KEIKSVSLPPPLDSRRLSSSSISRNGD 319 (395)
T ss_dssp TT---EEEEE-SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT----EEEEEE-SS---HHHHTT-EE-TTS-
T ss_pred CCCCcccceeeccccccceEEEEeecccCCceEEEEEECCCcEEEEECCCc--hHhhcccCCCccccccccccEECCCCC
Confidence 88765554444221 11223332 24667888889999999988765 44444433 223466778899999
Q ss_pred eeecCC-cceEEEEEe
Q 047325 342 SSSSTS-SCAQRWIVY 356 (368)
Q Consensus 342 ~~~~~~-~~~~~w~l~ 356 (368)
.+.-.+ .....+.++
T Consensus 320 i~~~~gpsE~~l~sv~ 335 (395)
T PF08596_consen 320 IFYWTGPSEIQLFSVW 335 (395)
T ss_dssp EEEE-SSSEEEEEEEE
T ss_pred EEEEeCcccEEEEEEE
Confidence 765443 344444443
No 310
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=98.81 E-value=1.2e-06 Score=76.93 Aligned_cols=235 Identities=10% Similarity=0.029 Sum_probs=155.9
Q ss_pred EEEEEecCC-EEEEccCCCcEEEEcCC--cceecccCCCCCeeEEEEeC--------------CEEEEEeCCCeEEEEee
Q 047325 47 IYSLAASKD-LLYTGSDSKNIRVWKNL--KEFCGFKASSGLVKAIVISG--------------EKIFTGHQDGKIRVWKI 109 (368)
Q Consensus 47 i~~~~~~~~-~l~s~~~dg~i~iw~~~--~~~~~~~~~~~~v~~~~~~~--------------~~l~s~~~dg~i~vw~~ 109 (368)
-.++++++. ++|-|+. ..|.+-|.. +.++.+..|...|+.+.|.. -.|+++...|.|.+||+
T Consensus 18 ~~A~Dw~~~GLiAygsh-slV~VVDs~s~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~d~ 96 (1062)
T KOG1912|consen 18 RNAADWSPSGLIAYGSH-SLVSVVDSRSLQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILVDF 96 (1062)
T ss_pred ccccccCccceEEEecC-ceEEEEehhhhhhhhccccCccceeEEEeccCCCchhccCccccceeEEeccccCcEEEEEe
Confidence 446777766 6666654 567788865 56778889999999999951 15778888999999999
Q ss_pred cCCCccccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcC---CC-CEEEEEeCCCcEEEEEccC
Q 047325 110 SPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQ---DC-GLLYTASWDRTFKVWRISD 185 (368)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~---~~-~~l~~~~~d~~i~iwd~~~ 185 (368)
........... |.+++..+.|-+ +. ..|++-....+|.+|+..+
T Consensus 97 ~~~s~~~~l~~--------------------------------~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdt 144 (1062)
T KOG1912|consen 97 VLASVINWLSH--------------------------------SNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDT 144 (1062)
T ss_pred hhhhhhhhhcC--------------------------------CCcchhheeeeeccCcchheeEEecCCcEEEEEEccC
Confidence 87765444332 778888898876 23 4566666678999999999
Q ss_pred CeEEEEeecCCCceEEEEeCCCC--eEEEEcCCCeEEEEEcCCCCCCcc-cccceeeccccc------------------
Q 047325 186 SKCLESVSAHDDAVNSVVSSSEG--LIFTGSADGTVKVWKREQHGKGTK-HSLAQTLLKQEC------------------ 244 (368)
Q Consensus 186 ~~~~~~~~~~~~~v~~~~~~~~~--~l~~~~~dg~i~i~d~~~~~~~~~-~~~~~~~~~~~~------------------ 244 (368)
|+..-..........|+.+.|-. .+..-+..|.+.+-+.-...+... .+..+....|..
T Consensus 145 G~k~Wk~~ys~~iLs~f~~DPfd~rh~~~l~s~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~ 224 (1062)
T KOG1912|consen 145 GEKFWKYDYSHEILSCFRVDPFDSRHFCVLGSKGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNSTTSTP 224 (1062)
T ss_pred CceeeccccCCcceeeeeeCCCCcceEEEEccCceEEEEeccCCCCCCCCceeEEEecCccchhhhhhhhhccccccCCC
Confidence 99988887777778889988866 666666677777766533221100 000000011100
Q ss_pred -------cEEEEEEcCCCCEEEEecCCCcEEEEeCCCcccccee-eeccceEEEEEEeC--CCEEEEeeCCCeEEEEecC
Q 047325 245 -------AVTALVVSSSRSIVYCGSSDGLVNFWEREKQLSHGGV-LKGHKLAVLCLAAA--GKLVFSGSADKTICVWRRD 314 (368)
Q Consensus 245 -------~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~-~~~~~~~~~~~~~~--~~~l~~~~~dg~i~iw~~~ 314 (368)
....++|+|.-+.++-......+.++|++-...+... +.......+.+-|+ ...|++.-.||.+.+|-..
T Consensus 225 ~sa~fity~a~faf~p~~rn~lfi~~prellv~dle~~~~l~vvpier~~akfv~vlP~~~rd~LfclH~nG~ltirvrk 304 (1062)
T KOG1912|consen 225 ASAYFITYCAQFAFSPHWRNILFITFPRELLVFDLEYECCLAVVPIERGGAKFVDVLPDPRRDALFCLHSNGRLTIRVRK 304 (1062)
T ss_pred cchhHHHHHHhhhcChhhhceEEEEeccceEEEcchhhceeEEEEeccCCcceeEeccCCCcceEEEEecCCeEEEEEee
Confidence 0123566776554444445677999998865444322 22233445667665 5689999999999999654
No 311
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.78 E-value=3e-08 Score=54.00 Aligned_cols=38 Identities=37% Similarity=0.875 Sum_probs=35.8
Q ss_pred CeEEEEeecCCCceEEEEeCCCC-eEEEEcCCCeEEEEE
Q 047325 186 SKCLESVSAHDDAVNSVVSSSEG-LIFTGSADGTVKVWK 223 (368)
Q Consensus 186 ~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~dg~i~i~d 223 (368)
++++..+++|...|++++|+|++ .|++++.|+.|++||
T Consensus 1 g~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 1 GKCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred CeEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 46789999999999999999998 999999999999997
No 312
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.77 E-value=3.3e-08 Score=53.83 Aligned_cols=36 Identities=25% Similarity=0.468 Sum_probs=33.3
Q ss_pred eeeeeecCCCEeEEEEcCCCCEEEEEeCCCcEEEEE
Q 047325 147 TALWIRHSDAVSCMSLDQDCGLLYTASWDRTFKVWR 182 (368)
Q Consensus 147 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd 182 (368)
...+.+|.+.|++++|+|++.+|++++.|+.|++||
T Consensus 4 ~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 4 VRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred EEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 446678999999999999999999999999999997
No 313
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.75 E-value=1.3e-07 Score=77.39 Aligned_cols=243 Identities=12% Similarity=0.085 Sum_probs=163.4
Q ss_pred CCCCCeeEEEEe-CCEEEEEeCCCeEEEEeecCCCccccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEe
Q 047325 80 ASSGLVKAIVIS-GEKIFTGHQDGKIRVWKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVS 158 (368)
Q Consensus 80 ~~~~~v~~~~~~-~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 158 (368)
-|...|+.+... .+++++++.||.++.|.-..-.-... ...+..|...|.
T Consensus 7 mhrd~i~hv~~tka~fiiqASlDGh~KFWkKs~isGvEf-----------------------------VKhFraHL~~I~ 57 (558)
T KOG0882|consen 7 MHRDVITHVFPTKAKFIIQASLDGHKKFWKKSRISGVEF-----------------------------VKHFRAHLGVIL 57 (558)
T ss_pred cccceeeeEeeehhheEEeeecchhhhhcCCCCccceee-----------------------------hhhhHHHHHHHH
Confidence 377788888777 88999999999999997543111100 011122778888
Q ss_pred EEEEcCCCCEEEEEeC-CCcEEEEEccCCeEEEEee--cCCCceEEEEeCCCC---eEEEE-cCCCeEEEEEcCCCCCCc
Q 047325 159 CMSLDQDCGLLYTASW-DRTFKVWRISDSKCLESVS--AHDDAVNSVVSSSEG---LIFTG-SADGTVKVWKREQHGKGT 231 (368)
Q Consensus 159 ~~~~~~~~~~l~~~~~-d~~i~iwd~~~~~~~~~~~--~~~~~v~~~~~~~~~---~l~~~-~~dg~i~i~d~~~~~~~~ 231 (368)
+++.+-++.++.+.+. |..++++|+++-..+.-++ ...+.+..+ .++.. .++++ ..++.+.++|-+....
T Consensus 58 sl~~S~dg~L~~Sv~d~Dhs~KvfDvEn~DminmiKL~~lPg~a~wv-~skGd~~s~IAVs~~~sg~i~VvD~~~d~~-- 134 (558)
T KOG0882|consen 58 SLAVSYDGWLFRSVEDPDHSVKVFDVENFDMINMIKLVDLPGFAEWV-TSKGDKISLIAVSLFKSGKIFVVDGFGDFC-- 134 (558)
T ss_pred hhhccccceeEeeccCcccceeEEEeeccchhhhcccccCCCceEEe-cCCCCeeeeEEeecccCCCcEEECCcCCcC--
Confidence 9999999999999777 9999999998766553333 223333333 23332 44433 4578999999876532
Q ss_pred ccccceeeccccccEEEEEEcCCCCEEEEecCCCcEEEEeCCCc-cccce----e----------ee-ccceEEEEEEeC
Q 047325 232 KHSLAQTLLKQECAVTALVVSSSRSIVYCGSSDGLVNFWEREKQ-LSHGG----V----------LK-GHKLAVLCLAAA 295 (368)
Q Consensus 232 ~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~-~~~~~----~----------~~-~~~~~~~~~~~~ 295 (368)
+......-|..+|..+.+.+-+..+++....|.|..|..+.. +.+.. . .+ .......+++|+
T Consensus 135 --q~~~fkklH~sPV~~i~y~qa~Ds~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~ 212 (558)
T KOG0882|consen 135 --QDGYFKKLHFSPVKKIRYNQAGDSAVSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPD 212 (558)
T ss_pred --ccceecccccCceEEEEeeccccceeeccccceeEeecCCCcccCccccccccccccchhhcccccccCccceEEccc
Confidence 334455668899999999999999999999999999997731 11100 0 01 112234788899
Q ss_pred CCEEEEeeCCCeEEEEecCCCceeeeEe--------------------------------eecccc-CeeEEEEecCCee
Q 047325 296 GKLVFSGSADKTICVWRRDGAIHTCLSV--------------------------------LTGHTG-PVKCLAVEEDRDS 342 (368)
Q Consensus 296 ~~~l~~~~~dg~i~iw~~~~~~~~~~~~--------------------------------~~~h~~-~v~~l~~~~~~~~ 342 (368)
+..+.+-+.|..|+++++.+++ .++. +..|.. .-+.+.|...+.+
T Consensus 213 g~qistl~~DrkVR~F~~KtGk--lvqeiDE~~t~~~~q~ks~y~l~~VelgRRmaverelek~~~~~~~~~~fdes~~f 290 (558)
T KOG0882|consen 213 GAQISTLNPDRKVRGFVFKTGK--LVQEIDEVLTDAQYQPKSPYGLMHVELGRRMAVERELEKHGSTVGTNAVFDESGNF 290 (558)
T ss_pred cCcccccCcccEEEEEEeccch--hhhhhhccchhhhhccccccccceeehhhhhhHHhhHhhhcCcccceeEEcCCCCE
Confidence 9999999999999999876542 1111 112322 3456788999998
Q ss_pred eecCCc-ceEEEEEeeC
Q 047325 343 SSSTSS-CAQRWIVYSG 358 (368)
Q Consensus 343 ~~~~~~-~~~~w~l~sg 358 (368)
+..+.- .+++..|.++
T Consensus 291 lly~t~~gikvin~~tn 307 (558)
T KOG0882|consen 291 LLYGTILGIKVINLDTN 307 (558)
T ss_pred EEeecceeEEEEEeecC
Confidence 887763 4565555543
No 314
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=98.74 E-value=1.4e-05 Score=64.03 Aligned_cols=188 Identities=18% Similarity=0.197 Sum_probs=116.1
Q ss_pred cCCEEEEccCCCcEEEEcCCccee--cccCCCCCeeEEEEeCCEEEEEeCCCeEEEEeecCCCccccc-cCCccccceee
Q 047325 53 SKDLLYTGSDSKNIRVWKNLKEFC--GFKASSGLVKAIVISGEKIFTGHQDGKIRVWKISPKNQSVHK-RAGTLPTLKDI 129 (368)
Q Consensus 53 ~~~~l~s~~~dg~i~iw~~~~~~~--~~~~~~~~v~~~~~~~~~l~s~~~dg~i~vw~~~~~~~~~~~-~~~~~~~~~~~ 129 (368)
.+..+++++.++.+..||..+... .+.............++.++.++.++.+..+|..+++..... .... +..
T Consensus 35 ~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~-~~~--- 110 (238)
T PF13360_consen 35 DGGRVYVASGDGNLYALDAKTGKVLWRFDLPGPISGAPVVDGGRVYVGTSDGSLYALDAKTGKVLWSIYLTSS-PPA--- 110 (238)
T ss_dssp ETTEEEEEETTSEEEEEETTTSEEEEEEECSSCGGSGEEEETTEEEEEETTSEEEEEETTTSCEEEEEEE-SS-CTC---
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEeeccccccceeeecccccccccceeeeEecccCCcceeeeeccccc-ccc---
Confidence 667777778999999999864432 233211111123555888888889999999999998875552 2110 000
Q ss_pred eeccCCCCceeEecccceeeeeecCCCEeEEEEcCCCCEEEEEeCCCcEEEEEccCCeEEEEeecCCCc----------e
Q 047325 130 FKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCGLLYTASWDRTFKVWRISDSKCLESVSAHDDA----------V 199 (368)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~----------v 199 (368)
.........+ .++.++++..++.|..+|+++|+.+......... +
T Consensus 111 -----------------------~~~~~~~~~~--~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~ 165 (238)
T PF13360_consen 111 -----------------------GVRSSSSPAV--DGDRLYVGTSSGKLVALDPKTGKLLWKYPVGEPRGSSPISSFSDI 165 (238)
T ss_dssp -----------------------STB--SEEEE--ETTEEEEEETCSEEEEEETTTTEEEEEEESSTT-SS--EEEETTE
T ss_pred -----------------------ccccccCceE--ecCEEEEEeccCcEEEEecCCCcEEEEeecCCCCCCcceeeeccc
Confidence 0001112222 2678888888999999999999998887764422 1
Q ss_pred EEEEeCCCCeEEEEcCCCeEEEEEcCCCCCCcccccceeeccccccEEEEEEcCCCCEEEEecCCCcEEEEeCCCcccc
Q 047325 200 NSVVSSSEGLIFTGSADGTVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSSSRSIVYCGSSDGLVNFWEREKQLSH 278 (368)
Q Consensus 200 ~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~ 278 (368)
..-....++.++.+..++.+.-+|+.++.. . .......+..+ ....+..|++++.++.+..||+++++..
T Consensus 166 ~~~~~~~~~~v~~~~~~g~~~~~d~~tg~~------~--w~~~~~~~~~~-~~~~~~~l~~~~~~~~l~~~d~~tG~~~ 235 (238)
T PF13360_consen 166 NGSPVISDGRVYVSSGDGRVVAVDLATGEK------L--WSKPISGIYSL-PSVDGGTLYVTSSDGRLYALDLKTGKVV 235 (238)
T ss_dssp EEEEECCTTEEEEECCTSSEEEEETTTTEE------E--EEECSS-ECEC-EECCCTEEEEEETTTEEEEEETTTTEEE
T ss_pred ccceEEECCEEEEEcCCCeEEEEECCCCCE------E--EEecCCCccCC-ceeeCCEEEEEeCCCEEEEEECCCCCEE
Confidence 122223345777777777544449887631 1 11111222221 3456778888889999999999988764
No 315
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.73 E-value=1.6e-08 Score=89.41 Aligned_cols=228 Identities=13% Similarity=0.111 Sum_probs=149.5
Q ss_pred CCCccccccccCCCceeeeccCcCCcEEEEEecCC--EEEEccCCCcEEEEcCCcc--eecccCCCCCeeEEEEe--CCE
Q 047325 21 NPGWSQFEENLPQNGLIGSLVREEGHIYSLAASKD--LLYTGSDSKNIRVWKNLKE--FCGFKASSGLVKAIVIS--GEK 94 (368)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~--~l~s~~~dg~i~iw~~~~~--~~~~~~~~~~v~~~~~~--~~~ 94 (368)
..+|.....-+.....++++..|...-+|++|+++ .|+.|+..|.|+++++..+ ......|..+|+-+..+ |..
T Consensus 1078 ~g~~~dr~~IFSRFr~w~~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~SavT~vePs~dgs~ 1157 (1516)
T KOG1832|consen 1078 HGNRRDRQFIFSRFRSWRSFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEESVNCHQSAVTLVEPSVDGST 1157 (1516)
T ss_pred ccCcccchhhHhhcccchhhhccccceeeEEeecCCceEEeeeccceEEEEEccCccccccccccccccccccccCCcce
Confidence 34565555567777888899999999999999865 9999999999999998755 44678999999999987 665
Q ss_pred EEEEeC-CC-eEEEEeecCCCccccccCCccccceeeeeccCCCCceeEecccceeeeeecC-CCEeEEEEcCCCCEEEE
Q 047325 95 IFTGHQ-DG-KIRVWKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHS-DAVSCMSLDQDCGLLYT 171 (368)
Q Consensus 95 l~s~~~-dg-~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~ 171 (368)
+++.+. .. ...+|++..--... |+ ..-.++.|+.....-+.
T Consensus 1158 ~Ltsss~S~PlsaLW~~~s~~~~~------------------------------------Hsf~ed~~vkFsn~~q~r~~ 1201 (1516)
T KOG1832|consen 1158 QLTSSSSSSPLSALWDASSTGGPR------------------------------------HSFDEDKAVKFSNSLQFRAL 1201 (1516)
T ss_pred eeeeccccCchHHHhccccccCcc------------------------------------ccccccceeehhhhHHHHHh
Confidence 555443 33 46789886522111 22 34467888775444455
Q ss_pred EeCCCcEEEEEccCCeEEEEee-c---CCCceEEEEeCCCCeEEEEcCCCeEEEEEcCCCCCCcccccceeeccccccEE
Q 047325 172 ASWDRTFKVWRISDSKCLESVS-A---HDDAVNSVVSSSEGLIFTGSADGTVKVWKREQHGKGTKHSLAQTLLKQECAVT 247 (368)
Q Consensus 172 ~~~d~~i~iwd~~~~~~~~~~~-~---~~~~v~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~i~ 247 (368)
|.......+||+.++.++.++- + ....-++..|+|...|+. .|| .+||.|... .+..+..... --
T Consensus 1202 gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP~D~LIl--ndG--vLWDvR~~~------aIh~FD~ft~-~~ 1270 (1516)
T KOG1832|consen 1202 GTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSPCDTLIL--NDG--VLWDVRIPE------AIHRFDQFTD-YG 1270 (1516)
T ss_pred cccccceEEEecccCcHHHHhcCcchhhhhhccccccCCCcceEe--eCc--eeeeeccHH------HHhhhhhhee-cc
Confidence 5555678999999998776632 1 122336788999884442 455 379998652 2333333321 12
Q ss_pred EEEEcCCCCEEEEecCCCcEEEEeCCCccccceeeeccceEEEEEEeCCCEEEE
Q 047325 248 ALVVSSSRSIVYCGSSDGLVNFWEREKQLSHGGVLKGHKLAVLCLAAAGKLVFS 301 (368)
Q Consensus 248 ~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 301 (368)
.-.|+|+|+.++..+ .|||+++.+.+..... -......|...|..++.
T Consensus 1271 ~G~FHP~g~eVIINS-----EIwD~RTF~lLh~VP~-Ldqc~VtFNstG~VmYa 1318 (1516)
T KOG1832|consen 1271 GGGFHPSGNEVIINS-----EIWDMRTFKLLHSVPS-LDQCAVTFNSTGDVMYA 1318 (1516)
T ss_pred cccccCCCceEEeec-----hhhhhHHHHHHhcCcc-ccceEEEeccCccchhh
Confidence 235899999888875 4899998765532222 12222334444555443
No 316
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.68 E-value=1.5e-06 Score=70.28 Aligned_cols=79 Identities=19% Similarity=0.199 Sum_probs=70.2
Q ss_pred eeeecCCCEeEEEEcCCCC-EEEEEeCCCcEEEEEccCCeEEEEeecCCCceEEEEeCCCC--eEEEEcCCCeEEEEEcC
Q 047325 149 LWIRHSDAVSCMSLDQDCG-LLYTASWDRTFKVWRISDSKCLESVSAHDDAVNSVVSSSEG--LIFTGSADGTVKVWKRE 225 (368)
Q Consensus 149 ~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~--~l~~~~~dg~i~i~d~~ 225 (368)
.+.++...|.+++|+|..+ ++..++.+..|+|.|+++...+..+..+ ..+++++|..+. .+.+|..+|.|.+||++
T Consensus 188 ~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~-~~~wSC~wDlde~h~IYaGl~nG~VlvyD~R 266 (463)
T KOG1645|consen 188 ILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAY-NQIWSCCWDLDERHVIYAGLQNGMVLVYDMR 266 (463)
T ss_pred cccccchhhhhhccCccccceeeeeccCceEEEEecccceeeeheecc-CCceeeeeccCCcceeEEeccCceEEEEEcc
Confidence 4556888999999999766 7888999999999999999999988877 788999998877 99999999999999999
Q ss_pred CCC
Q 047325 226 QHG 228 (368)
Q Consensus 226 ~~~ 228 (368)
...
T Consensus 267 ~~~ 269 (463)
T KOG1645|consen 267 QPE 269 (463)
T ss_pred CCC
Confidence 764
No 317
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=98.66 E-value=4e-05 Score=65.79 Aligned_cols=113 Identities=15% Similarity=0.162 Sum_probs=79.5
Q ss_pred CCCEeEEEEcC-CCCEEEEEe----CCCc----EEEEEccCCeEE----EEeecCCCceEEEEeCCCC-eEEEEcCCCeE
Q 047325 154 SDAVSCMSLDQ-DCGLLYTAS----WDRT----FKVWRISDSKCL----ESVSAHDDAVNSVVSSSEG-LIFTGSADGTV 219 (368)
Q Consensus 154 ~~~v~~~~~~~-~~~~l~~~~----~d~~----i~iwd~~~~~~~----~~~~~~~~~v~~~~~~~~~-~l~~~~~dg~i 219 (368)
.....++.|+- +...+.+.. .+|. -.+|+....+.. ..+ .....+.+++++|+. .++.|+.||.|
T Consensus 205 E~dPl~~~Fs~~~~~qi~tVE~s~s~~g~~~~d~ciYE~~r~klqrvsvtsi-pL~s~v~~ca~sp~E~kLvlGC~DgSi 283 (545)
T PF11768_consen 205 ENDPLDVEFSLNQPYQIHTVEQSISVKGEPSADSCIYECSRNKLQRVSVTSI-PLPSQVICCARSPSEDKLVLGCEDGSI 283 (545)
T ss_pred cCCcEEEEccCCCCcEEEEEEEecCCCCCceeEEEEEEeecCceeEEEEEEE-ecCCcceEEecCcccceEEEEecCCeE
Confidence 33445666765 334444432 2332 346666554321 122 356789999999998 99999999999
Q ss_pred EEEEcCCCCCCcccccceeeccccccEEEEEEcCCCCEEEEecCCCcEEEEeCCCc
Q 047325 220 KVWKREQHGKGTKHSLAQTLLKQECAVTALVVSSSRSIVYCGSSDGLVNFWEREKQ 275 (368)
Q Consensus 220 ~i~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~ 275 (368)
.+||...+ ........-.++.++|+|+|.++++|+..|.+.+||+.-.
T Consensus 284 iLyD~~~~--------~t~~~ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~ALs 331 (545)
T PF11768_consen 284 ILYDTTRG--------VTLLAKAEFIPTLIAWHPDGAIFVVGSEQGELQCFDMALS 331 (545)
T ss_pred EEEEcCCC--------eeeeeeecccceEEEEcCCCcEEEEEcCCceEEEEEeecC
Confidence 99998754 2233344556789999999999999999999999997643
No 318
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.63 E-value=5.7e-06 Score=73.55 Aligned_cols=188 Identities=16% Similarity=0.243 Sum_probs=123.2
Q ss_pred EEcCCCCEEEEEeCCCcEEEEEccCCeEEEEeecCCCc-eEEEEeCCCC-eEEEEcCCC-----eEEEEEcCCCCCCccc
Q 047325 161 SLDQDCGLLYTASWDRTFKVWRISDSKCLESVSAHDDA-VNSVVSSSEG-LIFTGSADG-----TVKVWKREQHGKGTKH 233 (368)
Q Consensus 161 ~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~-v~~~~~~~~~-~l~~~~~dg-----~i~i~d~~~~~~~~~~ 233 (368)
++++++..++.|+.+|.|.+++ ++.+.++.++++... |..+....+. .|++.+.|+ .+++||++..+.....
T Consensus 30 c~~s~~~~vvigt~~G~V~~Ln-~s~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n~sP 108 (933)
T KOG2114|consen 30 CCSSSTGSVVIGTADGRVVILN-SSFQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKNNSP 108 (933)
T ss_pred EEcCCCceEEEeeccccEEEec-ccceeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccCCCCCc
Confidence 4678888999999999998887 345566788887777 4444444443 777777765 4899999866443322
Q ss_pred ccc---e----eeccccccEEEEEEcCCCCEEEEecCCCcEEEEeCC---CccccceeeeccceEEEEE--EeCCCEEEE
Q 047325 234 SLA---Q----TLLKQECAVTALVVSSSRSIVYCGSSDGLVNFWERE---KQLSHGGVLKGHKLAVLCL--AAAGKLVFS 301 (368)
Q Consensus 234 ~~~---~----~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~---~~~~~~~~~~~~~~~~~~~--~~~~~~l~~ 301 (368)
.+. + .......++.+++.+.+-+.+++|-.+|.|..+.-+ ..-........-..+|+.+ .-++..++-
T Consensus 109 ~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~~~d~~s~lF 188 (933)
T KOG2114|consen 109 QCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLALRSDGKSVLF 188 (933)
T ss_pred ceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhccccceeeeccCCCCceeeEEecCCceeEE
Confidence 333 1 112246788999999999999999999999998633 1111111222233455444 446665333
Q ss_pred eeCCCeEEEEecCCCceeeeEeeeccccCeeEEEEecCCe-eeecCCcce
Q 047325 302 GSADKTICVWRRDGAIHTCLSVLTGHTGPVKCLAVEEDRD-SSSSTSSCA 350 (368)
Q Consensus 302 ~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~-~~~~~~~~~ 350 (368)
...-..|.+|.+.... .....+..|..+++|.+|++... ++.+++...
T Consensus 189 v~Tt~~V~~y~l~gr~-p~~~~ld~~G~~lnCss~~~~t~qfIca~~e~l 237 (933)
T KOG2114|consen 189 VATTEQVMLYSLSGRT-PSLKVLDNNGISLNCSSFSDGTYQFICAGSEFL 237 (933)
T ss_pred EEecceeEEEEecCCC-cceeeeccCCccceeeecCCCCccEEEecCceE
Confidence 3345579999988654 44566788888999999998766 444444333
No 319
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=98.58 E-value=8.6e-05 Score=68.97 Aligned_cols=215 Identities=17% Similarity=0.141 Sum_probs=131.8
Q ss_pred CCeeEEEEe--CCEEEEEeCCCeEEEEeecCCCccccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEE
Q 047325 83 GLVKAIVIS--GEKIFTGHQDGKIRVWKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCM 160 (368)
Q Consensus 83 ~~v~~~~~~--~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 160 (368)
..|.++.|. ++.++.+..+|.|.+-|.++........ -.+.|.++
T Consensus 69 ~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~eivg~---------------------------------vd~GI~aa 115 (1265)
T KOG1920|consen 69 DEIVSVQFLADTNSICVITALGDIILVDPETLELEIVGN---------------------------------VDNGISAA 115 (1265)
T ss_pred cceEEEEEecccceEEEEecCCcEEEEcccccceeeeee---------------------------------ccCceEEE
Confidence 578888887 6788888889999988777654322111 55789999
Q ss_pred EEcCCCCEEEEEeCCCcEEEEEc----cCCeE-------------------EEEeecC---------------------C
Q 047325 161 SLDQDCGLLYTASWDRTFKVWRI----SDSKC-------------------LESVSAH---------------------D 196 (368)
Q Consensus 161 ~~~~~~~~l~~~~~d~~i~iwd~----~~~~~-------------------~~~~~~~---------------------~ 196 (368)
+|+||+..++..+..+++.+-+- -..++ ...+.+. .
T Consensus 116 swS~Dee~l~liT~~~tll~mT~~f~~i~E~~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~ 195 (1265)
T KOG1920|consen 116 SWSPDEELLALITGRQTLLFMTKDFEPIAEKPLDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQD 195 (1265)
T ss_pred eecCCCcEEEEEeCCcEEEEEeccccchhccccccccccccccceecccccceeeecchhhhcccccccccccccchhhc
Confidence 99999999999888777766532 11111 1112211 0
Q ss_pred CceEEEEeCCCC-eEEEE----cCC-CeEEEEEcCCCCCCcccccceeeccccccEEEEEEcCCCCEEEEe---cCCCcE
Q 047325 197 DAVNSVVSSSEG-LIFTG----SAD-GTVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSSSRSIVYCG---SSDGLV 267 (368)
Q Consensus 197 ~~v~~~~~~~~~-~l~~~----~~d-g~i~i~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~---~~dg~i 267 (368)
..=..+.|-.|| ++++. ..+ +.|++||.+ +. ....-....+--.+++|-|.|..+++- ..|+.|
T Consensus 196 ~~~~~IsWRgDg~~fAVs~~~~~~~~RkirV~drE-g~------Lns~se~~~~l~~~LsWkPsgs~iA~iq~~~sd~~I 268 (1265)
T KOG1920|consen 196 DHKTSISWRGDGEYFAVSFVESETGTRKIRVYDRE-GA------LNSTSEPVEGLQHSLSWKPSGSLIAAIQCKTSDSDI 268 (1265)
T ss_pred cCCceEEEccCCcEEEEEEEeccCCceeEEEeccc-ch------hhcccCcccccccceeecCCCCeEeeeeecCCCCcE
Confidence 112358899999 66652 224 899999987 21 112222233344678999999988874 345679
Q ss_pred EEEeCCCccccc---eeeeccceEE--EEEEeCCCEEEE---eeCCCeEEEEecCCCceeeeEeeeccccCeeEEEEecC
Q 047325 268 NFWEREKQLSHG---GVLKGHKLAV--LCLAAAGKLVFS---GSADKTICVWRRDGAIHTCLSVLTGHTGPVKCLAVEED 339 (368)
Q Consensus 268 ~i~d~~~~~~~~---~~~~~~~~~~--~~~~~~~~~l~~---~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~l~~~~~ 339 (368)
.+|.... .... .........+ +++..++..|++ ......|++|-+.+.-+...+.+.-..... +.|+|.
T Consensus 269 vffErNG-L~hg~f~l~~p~de~~ve~L~Wns~sdiLAv~~~~~e~~~v~lwt~~NyhWYLKq~l~~~~~~~--~~W~p~ 345 (1265)
T KOG1920|consen 269 VFFERNG-LRHGEFVLPFPLDEKEVEELAWNSNSDILAVVTSNLENSLVQLWTTGNYHWYLKQELQFSQKAL--LMWDPV 345 (1265)
T ss_pred EEEecCC-ccccccccCCcccccchheeeecCCCCceeeeecccccceEEEEEecCeEEEEEEEEecccccc--ccccCC
Confidence 9998542 1111 0111122224 455557888887 555556999988776555555554333333 667765
Q ss_pred C
Q 047325 340 R 340 (368)
Q Consensus 340 ~ 340 (368)
.
T Consensus 346 ~ 346 (1265)
T KOG1920|consen 346 T 346 (1265)
T ss_pred C
Confidence 4
No 320
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=98.56 E-value=1.1e-05 Score=74.62 Aligned_cols=191 Identities=13% Similarity=0.093 Sum_probs=122.2
Q ss_pred CCCEeEEEEcCCCCEEEEEeCCCcEEEEEccCCeEEEEeecCCCceEEEEeCCCC-eEEEEcCCCeEEEEEcC----CCC
Q 047325 154 SDAVSCMSLDQDCGLLYTASWDRTFKVWRISDSKCLESVSAHDDAVNSVVSSSEG-LIFTGSADGTVKVWKRE----QHG 228 (368)
Q Consensus 154 ~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~dg~i~i~d~~----~~~ 228 (368)
...|.++.|..+.+.++.+..+|.|.+-|..+.... ....-...|.+++|+||+ .++..+.++++.+-+-. ...
T Consensus 68 d~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~e-ivg~vd~GI~aaswS~Dee~l~liT~~~tll~mT~~f~~i~E~ 146 (1265)
T KOG1920|consen 68 DDEIVSVQFLADTNSICVITALGDIILVDPETLELE-IVGNVDNGISAASWSPDEELLALITGRQTLLFMTKDFEPIAEK 146 (1265)
T ss_pred CcceEEEEEecccceEEEEecCCcEEEEccccccee-eeeeccCceEEEeecCCCcEEEEEeCCcEEEEEeccccchhcc
Confidence 368999999999999999999999999998765432 233346789999999999 77777777777655321 000
Q ss_pred CC-------c------ccccceeecc---------------------ccccEEEEEEcCCCCEEEEe-----cCCCcEEE
Q 047325 229 KG-------T------KHSLAQTLLK---------------------QECAVTALVVSSSRSIVYCG-----SSDGLVNF 269 (368)
Q Consensus 229 ~~-------~------~~~~~~~~~~---------------------~~~~i~~~~~~~~~~~l~~~-----~~dg~i~i 269 (368)
.. . -.+....+.+ ....=+.+.|-.||+++++. .....|++
T Consensus 147 ~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~fAVs~~~~~~~~RkirV 226 (1265)
T KOG1920|consen 147 PLDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRGDGEYFAVSFVESETGTRKIRV 226 (1265)
T ss_pred ccccccccccccceecccccceeeecchhhhcccccccccccccchhhccCCceEEEccCCcEEEEEEEeccCCceeEEE
Confidence 00 0 0000001110 11123458899999999983 33378999
Q ss_pred EeCCCccccceeeeccceEEEEEEeCCCEEEEee---CCCeEEEEecCCCce-eeeEeeeccccCeeEEEEecCCeeeec
Q 047325 270 WEREKQLSHGGVLKGHKLAVLCLAAAGKLVFSGS---ADKTICVWRRDGAIH-TCLSVLTGHTGPVKCLAVEEDRDSSSS 345 (368)
Q Consensus 270 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~---~dg~i~iw~~~~~~~-~~~~~~~~h~~~v~~l~~~~~~~~~~~ 345 (368)
||.+................+++.|.|..+++-. .|+.|.+|.-+.-.. .....+.....++..++|+.++..||.
T Consensus 227 ~drEg~Lns~se~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffErNGL~hg~f~l~~p~de~~ve~L~Wns~sdiLAv 306 (1265)
T KOG1920|consen 227 YDREGALNSTSEPVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFERNGLRHGEFVLPFPLDEKEVEELAWNSNSDILAV 306 (1265)
T ss_pred ecccchhhcccCcccccccceeecCCCCeEeeeeecCCCCcEEEEecCCccccccccCCcccccchheeeecCCCCceee
Confidence 9987322222233334455678888999888764 466799997543211 122223334455999999999998875
No 321
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=98.53 E-value=3.6e-06 Score=73.12 Aligned_cols=201 Identities=14% Similarity=0.123 Sum_probs=122.9
Q ss_pred cCCCEeEEEEcCCCCEEEEEeCCCcEEEEEccCCeEEEEe-ecCCCceEEEEeCCCC-eEEEEcCCCeEEEEEcCCCCCC
Q 047325 153 HSDAVSCMSLDQDCGLLYTASWDRTFKVWRISDSKCLESV-SAHDDAVNSVVSSSEG-LIFTGSADGTVKVWKREQHGKG 230 (368)
Q Consensus 153 ~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~-~~~~~~v~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~ 230 (368)
+...|.--+++..+++++.|+.-|.+.+|+-..++....- .+..+.+..+..+++. ++++|+..|.|.++.++.....
T Consensus 32 ~~~~v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~ 111 (726)
T KOG3621|consen 32 FPARVKLTCVDATEEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELPR 111 (726)
T ss_pred CcceEEEEEeecCCceEEEecccceEEEEecCchhhhcccccCccceEEEEEecchhHhhhhhcCCceEEeehhhccCCC
Confidence 4455666667778889999999999999997665543322 2244555566777777 7888888999999988764332
Q ss_pred cccccceeeccccccEEEEEEcCCCCEEEEecCCCcEEEEeCCCc---cccceeeeccceEEEEEEeCCCEEEEeeCCCe
Q 047325 231 TKHSLAQTLLKQECAVTALVVSSSRSIVYCGSSDGLVNFWEREKQ---LSHGGVLKGHKLAVLCLAAAGKLVFSGSADKT 307 (368)
Q Consensus 231 ~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~---~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~ 307 (368)
........-..|...|++++|++++..+++|...|.|..-.+... ......+..-...|+-++.-..+|.+++--..
T Consensus 112 ~~~~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s~~~~~~~~q~il~~ds~IVQlD~~q~~LLVStl~r~ 191 (726)
T KOG3621|consen 112 DLDYVTPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDSRQAFLSKSQEILSEDSEIVQLDYLQSYLLVSTLTRC 191 (726)
T ss_pred cceeeccccccCCceEEEEEecccccEEeecCCCceEEEEEechhhhhccccceeeccCcceEEeecccceehHhhhhhh
Confidence 222222223347889999999999999999999999999887762 11112233345566777764444444443333
Q ss_pred EEEEecCCCceeeeEeeecccc-CeeEEEEec-----CCeeeecCCcceEEEEE
Q 047325 308 ICVWRRDGAIHTCLSVLTGHTG-PVKCLAVEE-----DRDSSSSTSSCAQRWIV 355 (368)
Q Consensus 308 i~iw~~~~~~~~~~~~~~~h~~-~v~~l~~~~-----~~~~~~~~~~~~~~w~l 355 (368)
.+++.+..+...+..-. ..+ .-...+|-| +...+..+-...++|..
T Consensus 192 -~Lc~tE~eti~QIG~k~-R~~~~~~GACF~~g~~~~q~~~IycaRPG~RlWea 243 (726)
T KOG3621|consen 192 -ILCQTEAETITQIGKKP-RKSLIDFGACFFPGQCKAQKPQIYCARPGLRLWEA 243 (726)
T ss_pred -heeecchhHHHHhcCCC-cCCccccceEEeeccccCCCceEEEecCCCceEEe
Confidence 24444433212221111 111 122233433 33456666677777755
No 322
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=98.52 E-value=4.1e-05 Score=64.97 Aligned_cols=216 Identities=13% Similarity=0.113 Sum_probs=130.7
Q ss_pred eEEEEe--CCEEEEEeCCCeEEEEeecCCCccccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEc
Q 047325 86 KAIVIS--GEKIFTGHQDGKIRVWKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLD 163 (368)
Q Consensus 86 ~~~~~~--~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 163 (368)
+-+.|+ |.||+|--.-| |.+|-=++-.....+. |. .|.-+.|+
T Consensus 214 tyv~wSP~GTYL~t~Hk~G-I~lWGG~~f~r~~RF~---------------------------------Hp-~Vq~idfS 258 (698)
T KOG2314|consen 214 TYVRWSPKGTYLVTFHKQG-IALWGGESFDRIQRFY---------------------------------HP-GVQFIDFS 258 (698)
T ss_pred eeEEecCCceEEEEEeccc-eeeecCccHHHHHhcc---------------------------------CC-CceeeecC
Confidence 456666 88888887665 6678544333222221 33 47789999
Q ss_pred CCCCEEEEEeC-----------CCcEEEEEccCCeEEEEeecCC--CceE-EEEeCCCCeEEEEcCCCeEEEEEcCCCCC
Q 047325 164 QDCGLLYTASW-----------DRTFKVWRISDSKCLESVSAHD--DAVN-SVVSSSEGLIFTGSADGTVKVWKREQHGK 229 (368)
Q Consensus 164 ~~~~~l~~~~~-----------d~~i~iwd~~~~~~~~~~~~~~--~~v~-~~~~~~~~~l~~~~~dg~i~i~d~~~~~~ 229 (368)
|+.++|++-+. ...++|||+.+|...+.+.... ..+. -..|+.|+..++.-....|.||+.....
T Consensus 259 P~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI~tG~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~~sisIyEtpsf~- 337 (698)
T KOG2314|consen 259 PNEKYLVTYSPEPIIVEEDDNEGQQLIIWDIATGLLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTGNSISIYETPSFM- 337 (698)
T ss_pred CccceEEEecCCccccCcccCCCceEEEEEccccchhcceeccCCCccccceEEeccCCceeEEeccceEEEEecCcee-
Confidence 99999998753 2579999999999988887632 2333 3489999844444444689999875431
Q ss_pred CcccccceeeccccccEEEEEEcCCCCEEEEecCC-----CcEEEEeCCCccccceeeeccceEEEEEEe--CCCEEEEe
Q 047325 230 GTKHSLAQTLLKQECAVTALVVSSSRSIVYCGSSD-----GLVNFWEREKQLSHGGVLKGHKLAVLCLAA--AGKLVFSG 302 (368)
Q Consensus 230 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d-----g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~~~ 302 (368)
++....-.-..|....|+|.++.||-=... ..+.+-.+.++..+. ...-+...-+.+.+ +|.+|+.-
T Consensus 338 -----lld~Kslki~gIr~FswsP~~~llAYwtpe~~~~parvtL~evPs~~~iR-t~nlfnVsDckLhWQk~gdyLcvk 411 (698)
T KOG2314|consen 338 -----LLDKKSLKISGIRDFSWSPTSNLLAYWTPETNNIPARVTLMEVPSKREIR-TKNLFNVSDCKLHWQKSGDYLCVK 411 (698)
T ss_pred -----eecccccCCccccCcccCCCcceEEEEcccccCCcceEEEEecCccceee-eccceeeeccEEEeccCCcEEEEE
Confidence 122222234568889999998887753321 235555555544332 22223333334444 57777653
Q ss_pred ----------eCCCeEEEEecCCCceeeeEeeeccccCeeEEEEecCCeeeec
Q 047325 303 ----------SADKTICVWRRDGAIHTCLSVLTGHTGPVKCLAVEEDRDSSSS 345 (368)
Q Consensus 303 ----------~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~ 345 (368)
+.-..+.|+.++... .++..+ .-...|...+|-|.|..++.
T Consensus 412 vdR~tK~~~~g~f~n~eIfrireKd-Ipve~v-elke~vi~FaWEP~gdkF~v 462 (698)
T KOG2314|consen 412 VDRHTKSKVKGQFSNLEIFRIREKD-IPVEVV-ELKESVIAFAWEPHGDKFAV 462 (698)
T ss_pred EEeeccccccceEeeEEEEEeeccC-CCceee-ecchheeeeeeccCCCeEEE
Confidence 222345666665542 223222 24678999999999986653
No 323
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.48 E-value=9e-08 Score=84.92 Aligned_cols=180 Identities=14% Similarity=0.190 Sum_probs=125.1
Q ss_pred ceeeeeecCCCEeEEEEcCCCCEEEEEeCCCcEEEEEccCCeEEEEeecCCCceEEEEeCCCC-eEE-EEcCCC-eEEEE
Q 047325 146 RTALWIRHSDAVSCMSLDQDCGLLYTASWDRTFKVWRISDSKCLESVSAHDDAVNSVVSSSEG-LIF-TGSADG-TVKVW 222 (368)
Q Consensus 146 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~-~~~~dg-~i~i~ 222 (368)
....+..|....+|++|+.+.++|+.|+..|.|+++++.+|........|..+|+-+.-+.+| .++ +++... -..+|
T Consensus 1093 ~w~~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~PlsaLW 1172 (1516)
T KOG1832|consen 1093 SWRSFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPLSALW 1172 (1516)
T ss_pred cchhhhccccceeeEEeecCCceEEeeeccceEEEEEccCccccccccccccccccccccCCcceeeeeccccCchHHHh
Confidence 344566788899999999999999999999999999999999999999999999999999998 444 333333 56789
Q ss_pred EcCCCCCCcccccceeeccccccEEEEEEcCCCCEEEEecCCCcEEEEeCCCccccceeeec-----cceEEEEEEeCCC
Q 047325 223 KREQHGKGTKHSLAQTLLKQECAVTALVVSSSRSIVYCGSSDGLVNFWEREKQLSHGGVLKG-----HKLAVLCLAAAGK 297 (368)
Q Consensus 223 d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~-----~~~~~~~~~~~~~ 297 (368)
+...... +...+. .-.++.|+.....-+.|+......+||+++...+...+.+ .......|+|+..
T Consensus 1173 ~~~s~~~-----~~Hsf~----ed~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP~D~ 1243 (1516)
T KOG1832|consen 1173 DASSTGG-----PRHSFD----EDKAVKFSNSLQFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSPCDT 1243 (1516)
T ss_pred ccccccC-----cccccc----ccceeehhhhHHHHHhcccccceEEEecccCcHHHHhcCcchhhhhhccccccCCCcc
Confidence 9864211 222222 2456778776555556666678999999987666543332 1234467788887
Q ss_pred EEEEeeCCCeEEEEecCCCceeeeEeeeccccCeeEEEEecCCee
Q 047325 298 LVFSGSADKTICVWRRDGAIHTCLSVLTGHTGPVKCLAVEEDRDS 342 (368)
Q Consensus 298 ~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~ 342 (368)
+++- ||. +||++.. ..+..|...+..+ .-.|+|.|..
T Consensus 1244 LIln---dGv--LWDvR~~--~aIh~FD~ft~~~-~G~FHP~g~e 1280 (1516)
T KOG1832|consen 1244 LILN---DGV--LWDVRIP--EAIHRFDQFTDYG-GGGFHPSGNE 1280 (1516)
T ss_pred eEee---Cce--eeeeccH--HHHhhhhhheecc-cccccCCCce
Confidence 7763 554 7988765 4455554433211 2257777763
No 324
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.45 E-value=0.00033 Score=54.02 Aligned_cols=138 Identities=18% Similarity=0.194 Sum_probs=90.7
Q ss_pred CEEEEccCCCcEEEEcCCcceecccC-CCCCeeEEEE-eCCEEEEEeCCCeEEEEeecCCCccccccCCccccceeeeec
Q 047325 55 DLLYTGSDSKNIRVWKNLKEFCGFKA-SSGLVKAIVI-SGEKIFTGHQDGKIRVWKISPKNQSVHKRAGTLPTLKDIFKS 132 (368)
Q Consensus 55 ~~l~s~~~dg~i~iw~~~~~~~~~~~-~~~~v~~~~~-~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~ 132 (368)
.+++.|+..+.+.--|...+....+. -...+.+-+. -|++++.|+..|.+.+.+.+++++.......
T Consensus 24 T~v~igSHs~~~~avd~~sG~~~We~ilg~RiE~sa~vvgdfVV~GCy~g~lYfl~~~tGs~~w~f~~~----------- 92 (354)
T KOG4649|consen 24 TLVVIGSHSGIVIAVDPQSGNLIWEAILGVRIECSAIVVGDFVVLGCYSGGLYFLCVKTGSQIWNFVIL----------- 92 (354)
T ss_pred eEEEEecCCceEEEecCCCCcEEeehhhCceeeeeeEEECCEEEEEEccCcEEEEEecchhheeeeeeh-----------
Confidence 36777777777766666544332221 1223333333 3999999999999999999999765544321
Q ss_pred cCCCCceeEecccceeeeeecCCCEe-EEEEcCCCCEEEEEeCCCcEEEEEccCCeEEEEeecCCCceEEEEeCC-CCeE
Q 047325 133 SIKPSNYIEVRRHRTALWIRHSDAVS-CMSLDQDCGLLYTASWDRTFKVWRISDSKCLESVSAHDDAVNSVVSSS-EGLI 210 (368)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~v~-~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~-~~~l 210 (368)
+.|. .....+++..+..++.|++.+..|.++..++...+.......+-+..+ ++.|
T Consensus 93 ----------------------~~vk~~a~~d~~~glIycgshd~~~yalD~~~~~cVykskcgG~~f~sP~i~~g~~sl 150 (354)
T KOG4649|consen 93 ----------------------ETVKVRAQCDFDGGLIYCGSHDGNFYALDPKTYGCVYKSKCGGGTFVSPVIAPGDGSL 150 (354)
T ss_pred ----------------------hhhccceEEcCCCceEEEecCCCcEEEecccccceEEecccCCceeccceecCCCceE
Confidence 1221 234567889999999999999999999999888765444333444555 4466
Q ss_pred EEEcCCCeEEEEEcC
Q 047325 211 FTGSADGTVKVWKRE 225 (368)
Q Consensus 211 ~~~~~dg~i~i~d~~ 225 (368)
+.+...|.+.--..+
T Consensus 151 y~a~t~G~vlavt~~ 165 (354)
T KOG4649|consen 151 YAAITAGAVLAVTKN 165 (354)
T ss_pred EEEeccceEEEEccC
Confidence 666666666555544
No 325
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=98.45 E-value=0.00032 Score=62.37 Aligned_cols=245 Identities=14% Similarity=0.143 Sum_probs=126.8
Q ss_pred CEEEEccCCCcEEEEcCCcceec--ccCCCC------CeeEEEEeCCEEEEEe---------CCCeEEEEeecCCCcccc
Q 047325 55 DLLYTGSDSKNIRVWKNLKEFCG--FKASSG------LVKAIVISGEKIFTGH---------QDGKIRVWKISPKNQSVH 117 (368)
Q Consensus 55 ~~l~s~~~dg~i~iw~~~~~~~~--~~~~~~------~v~~~~~~~~~l~s~~---------~dg~i~vw~~~~~~~~~~ 117 (368)
+.++.++.+|.|+-+|..+.... +..... ...+..+.+..++.++ .+|.+..+|.++++....
T Consensus 111 ~~V~v~~~~g~v~AlD~~TG~~~W~~~~~~~~~~~~~i~ssP~v~~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W~ 190 (488)
T cd00216 111 RKVFFGTFDGRLVALDAETGKQVWKFGNNDQVPPGYTMTGAPTIVKKLVIIGSSGAEFFACGVRGALRAYDVETGKLLWR 190 (488)
T ss_pred CeEEEecCCCeEEEEECCCCCEeeeecCCCCcCcceEecCCCEEECCEEEEeccccccccCCCCcEEEEEECCCCceeeE
Confidence 56666677788887776643322 221111 0112223345555554 357788888888876655
Q ss_pred ccCCccccceeeeeccCCCCceeEecccceeeeeecC-CCE-eEEEEcCCCCEEEEEeCCC------------------c
Q 047325 118 KRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHS-DAV-SCMSLDQDCGLLYTASWDR------------------T 177 (368)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v-~~~~~~~~~~~l~~~~~d~------------------~ 177 (368)
.......... .. ........+ .+. ..| ...++.+.+..++.++.++ .
T Consensus 191 ~~~~~~~~~~--~~----------~~~~~~~~~-~~~g~~vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~ 257 (488)
T cd00216 191 FYTTEPDPNA--FP----------TWGPDRQMW-GPGGGTSWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDS 257 (488)
T ss_pred eeccCCCcCC--CC----------CCCCCccee-cCCCCCccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceee
Confidence 4432110000 00 000000000 011 111 1245555566777776655 7
Q ss_pred EEEEEccCCeEEEEeecCCCceE--------EEE-eC-CCC----eEEEEcCCCeEEEEEcCCCCCCcccccceeecccc
Q 047325 178 FKVWRISDSKCLESVSAHDDAVN--------SVV-SS-SEG----LIFTGSADGTVKVWKREQHGKGTKHSLAQTLLKQE 243 (368)
Q Consensus 178 i~iwd~~~~~~~~~~~~~~~~v~--------~~~-~~-~~~----~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~ 243 (368)
|.-+|+.+|+.+-.++.-..... .+. .. -++ .+++++.+|.+...|.++++........
T Consensus 258 l~Ald~~tG~~~W~~~~~~~~~~~~~~~s~p~~~~~~~~~g~~~~~V~~g~~~G~l~ald~~tG~~~W~~~~~------- 330 (488)
T cd00216 258 IVALDADTGKVKWFYQTTPHDLWDYDGPNQPSLADIKPKDGKPVPAIVHAPKNGFFYVLDRTTGKLISARPEV------- 330 (488)
T ss_pred EEEEcCCCCCEEEEeeCCCCCCcccccCCCCeEEeccccCCCeeEEEEEECCCceEEEEECCCCcEeeEeEee-------
Confidence 99999999998877652111110 010 00 122 5788889999999999887542211110
Q ss_pred ccEEEEEEcCCCCEEEEe------------------cCCCcEEEEeCCCccccceeeec-c--------ceEEEEEEeCC
Q 047325 244 CAVTALVVSSSRSIVYCG------------------SSDGLVNFWEREKQLSHGGVLKG-H--------KLAVLCLAAAG 296 (368)
Q Consensus 244 ~~i~~~~~~~~~~~l~~~------------------~~dg~i~i~d~~~~~~~~~~~~~-~--------~~~~~~~~~~~ 296 (368)
...+..+| ..++.+ ..+|.+.-.|..+++........ + ......+...+
T Consensus 331 --~~~~~~~~--~~vyv~~~~~~~~~~~~~~~~~~~~~~G~l~AlD~~tG~~~W~~~~~~~~~~~~~g~~~~~~~~~~~g 406 (488)
T cd00216 331 --EQPMAYDP--GLVYLGAFHIPLGLPPQKKKRCKKPGKGGLAALDPKTGKVVWEKREGTIRDSWNIGFPHWGGSLATAG 406 (488)
T ss_pred --ccccccCC--ceEEEccccccccCcccccCCCCCCCceEEEEEeCCCCcEeeEeeCCccccccccCCcccCcceEecC
Confidence 01122233 222221 23567777888777655433322 0 00111233467
Q ss_pred CEEEEeeCCCeEEEEecCCCceeeeEeee
Q 047325 297 KLVFSGSADKTICVWRRDGAIHTCLSVLT 325 (368)
Q Consensus 297 ~~l~~~~~dg~i~iw~~~~~~~~~~~~~~ 325 (368)
.+|++++.||.|+.+|.+++ +.+.+.+
T Consensus 407 ~~v~~g~~dG~l~ald~~tG--~~lW~~~ 433 (488)
T cd00216 407 NLVFAGAADGYFRAFDATTG--KELWKFR 433 (488)
T ss_pred CeEEEECCCCeEEEEECCCC--ceeeEEE
Confidence 88999999999999998877 5555544
No 326
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=98.44 E-value=0.00084 Score=57.99 Aligned_cols=101 Identities=10% Similarity=0.097 Sum_probs=72.8
Q ss_pred ccccccEEEEEEcCCCCEEEEecCCCcEEEEeCCCccccceeeeccceEEEEEEeCCCEEEEeeCCCeEEEEecCCCc--
Q 047325 240 LKQECAVTALVVSSSRSIVYCGSSDGLVNFWEREKQLSHGGVLKGHKLAVLCLAAAGKLVFSGSADKTICVWRRDGAI-- 317 (368)
Q Consensus 240 ~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~-- 317 (368)
...+..+.+++++|+...|+.|+.||.|.+||...+... .....-.....+++|+|.++++|+..|.+.+||+....
T Consensus 256 ipL~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~t~-~~ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~ALspi~ 334 (545)
T PF11768_consen 256 IPLPSQVICCARSPSEDKLVLGCEDGSIILYDTTRGVTL-LAKAEFIPTLIAWHPDGAIFVVGSEQGELQCFDMALSPIK 334 (545)
T ss_pred EecCCcceEEecCcccceEEEEecCCeEEEEEcCCCeee-eeeecccceEEEEcCCCcEEEEEcCCceEEEEEeecCccc
Confidence 356778999999999999999999999999998765433 12222334457888899999999999999999975321
Q ss_pred ---------eeeeEee---eccccCeeEEEEecCCe
Q 047325 318 ---------HTCLSVL---TGHTGPVKCLAVEEDRD 341 (368)
Q Consensus 318 ---------~~~~~~~---~~h~~~v~~l~~~~~~~ 341 (368)
......+ -.+...+..+.|.+...
T Consensus 335 ~qLlsEd~~P~~~L~Ls~yf~~~~~L~~iqW~~~~~ 370 (545)
T PF11768_consen 335 MQLLSEDATPKSTLQLSKYFRVSSSLVHIQWAPAPQ 370 (545)
T ss_pred eeeccccCCCccEEeeehhccCcchhheeEeccCCC
Confidence 1111122 23455677888885544
No 327
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=98.43 E-value=0.00014 Score=57.51 Aligned_cols=189 Identities=12% Similarity=0.147 Sum_probs=102.6
Q ss_pred ecCCCEeEEEEcCCCC-EEEEEeCCCcEEEEEccCCeEEEEeecCC-CceEEEEeCCCC-eEEEEcCCCeEEEEEcCCCC
Q 047325 152 RHSDAVSCMSLDQDCG-LLYTASWDRTFKVWRISDSKCLESVSAHD-DAVNSVVSSSEG-LIFTGSADGTVKVWKREQHG 228 (368)
Q Consensus 152 ~~~~~v~~~~~~~~~~-~l~~~~~d~~i~iwd~~~~~~~~~~~~~~-~~v~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~ 228 (368)
+-.+.+..++|+|+.+ ++++....+.|..++. +|+.+..+.-.. +..-.+++..++ ++++--.++.+.++++....
T Consensus 19 g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~-~G~vlr~i~l~g~~D~EgI~y~g~~~~vl~~Er~~~L~~~~~~~~~ 97 (248)
T PF06977_consen 19 GILDELSGLTYNPDTGTLFAVQDEPGEIYELSL-DGKVLRRIPLDGFGDYEGITYLGNGRYVLSEERDQRLYIFTIDDDT 97 (248)
T ss_dssp T--S-EEEEEEETTTTEEEEEETTTTEEEEEET-T--EEEEEE-SS-SSEEEEEE-STTEEEEEETTTTEEEEEEE----
T ss_pred CccCCccccEEcCCCCeEEEEECCCCEEEEEcC-CCCEEEEEeCCCCCCceeEEEECCCEEEEEEcCCCcEEEEEEeccc
Confidence 3556699999999755 5566667788888886 578888776443 557888888888 44444458999999995443
Q ss_pred CCcccccceee-----ccccccEEEEEEcCCCCEEEEecCCCcEEEEeCCC---ccccc-eee--------eccceEEEE
Q 047325 229 KGTKHSLAQTL-----LKQECAVTALVVSSSRSIVYCGSSDGLVNFWEREK---QLSHG-GVL--------KGHKLAVLC 291 (368)
Q Consensus 229 ~~~~~~~~~~~-----~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~---~~~~~-~~~--------~~~~~~~~~ 291 (368)
..........+ ..+...+..++|+|.++.|+.+-+..-..+|.++. ..... ... ......-++
T Consensus 98 ~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~S~l~ 177 (248)
T PF06977_consen 98 TSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVRDLSGLS 177 (248)
T ss_dssp TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS---EEE
T ss_pred cccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeeccccccccccceeccccceE
Confidence 21111111111 13446689999999888888887776667776653 11110 000 011122244
Q ss_pred EEeC-CCEEEEeeCCCeEEEEecCCCceeeeEeeec-c------ccCeeEEEEecCCee
Q 047325 292 LAAA-GKLVFSGSADKTICVWRRDGAIHTCLSVLTG-H------TGPVKCLAVEEDRDS 342 (368)
Q Consensus 292 ~~~~-~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~-h------~~~v~~l~~~~~~~~ 342 (368)
+.|. +++++....+..|..+|.... ......+.. . -...-.|+|.++|.+
T Consensus 178 ~~p~t~~lliLS~es~~l~~~d~~G~-~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~L 235 (248)
T PF06977_consen 178 YDPRTGHLLILSDESRLLLELDRQGR-VVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNL 235 (248)
T ss_dssp EETTTTEEEEEETTTTEEEEE-TT---EEEEEE-STTGGG-SS---SEEEEEE-TT--E
T ss_pred EcCCCCeEEEEECCCCeEEEECCCCC-EEEEEEeCCcccCcccccCCccEEEECCCCCE
Confidence 5553 667778888888999985433 222223322 1 135789999999984
No 328
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.40 E-value=4.4e-05 Score=62.17 Aligned_cols=76 Identities=21% Similarity=0.211 Sum_probs=63.4
Q ss_pred eccCcCCcEEEEEecCC---EEEEccCCCcEEEEcCCcc--eecccCCCCCeeEEEEe---CCEEEEEeCCCeEEEEeec
Q 047325 39 SLVREEGHIYSLAASKD---LLYTGSDSKNIRVWKNLKE--FCGFKASSGLVKAIVIS---GEKIFTGHQDGKIRVWKIS 110 (368)
Q Consensus 39 ~~~~h~~~i~~~~~~~~---~l~s~~~dg~i~iw~~~~~--~~~~~~~~~~v~~~~~~---~~~l~s~~~dg~i~vw~~~ 110 (368)
-+.+|...|..++|++. ++..++.+.+|+|.|+++. ...+..+ ..+.+++|+ .++++.|-..|.|.|||++
T Consensus 188 ~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~-~~~wSC~wDlde~h~IYaGl~nG~VlvyD~R 266 (463)
T KOG1645|consen 188 ILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAY-NQIWSCCWDLDERHVIYAGLQNGMVLVYDMR 266 (463)
T ss_pred cccccchhhhhhccCccccceeeeeccCceEEEEecccceeeeheecc-CCceeeeeccCCcceeEEeccCceEEEEEcc
Confidence 46677888999999855 7889999999999999864 4456666 789999998 6689999999999999998
Q ss_pred CCCcc
Q 047325 111 PKNQS 115 (368)
Q Consensus 111 ~~~~~ 115 (368)
..+..
T Consensus 267 ~~~~~ 271 (463)
T KOG1645|consen 267 QPEGP 271 (463)
T ss_pred CCCch
Confidence 77643
No 329
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=98.40 E-value=1.3e-07 Score=80.86 Aligned_cols=194 Identities=18% Similarity=0.219 Sum_probs=120.9
Q ss_pred CCeeEEEEe----CCEEEEEeCCCeEEEEeecCCCccccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEe
Q 047325 83 GLVKAIVIS----GEKIFTGHQDGKIRVWKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVS 158 (368)
Q Consensus 83 ~~v~~~~~~----~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 158 (368)
..+.|++.. ...++.|..+|.|.+-.+....-.. .....++....+
T Consensus 57 qy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs------------------------------~E~tp~~ar~Ct 106 (783)
T KOG1008|consen 57 QYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSS------------------------------AEVTPGYARPCT 106 (783)
T ss_pred CCceeehhhcCCchhhhhhccccCceEEeecCCccccc------------------------------ceeccccccccc
Confidence 345566654 2367888999999998876553220 011223788899
Q ss_pred EEEEcC-CCCEEEEEe----CCCcEEEEEccCC--eEEE--Eeec-CCCceEEEEeCCCC-eEEEEcCCCeEEEEEcCCC
Q 047325 159 CMSLDQ-DCGLLYTAS----WDRTFKVWRISDS--KCLE--SVSA-HDDAVNSVVSSSEG-LIFTGSADGTVKVWKREQH 227 (368)
Q Consensus 159 ~~~~~~-~~~~l~~~~----~d~~i~iwd~~~~--~~~~--~~~~-~~~~v~~~~~~~~~-~l~~~~~dg~i~i~d~~~~ 227 (368)
+++|++ |.+.||+|- .|..+.|||+.++ .+.. .+.+ -.....+++|..+. .+.+|.....+.++|+|..
T Consensus 107 ~lAwneLDtn~LAagldkhrnds~~~Iwdi~s~ltvPke~~~fs~~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs 186 (783)
T KOG1008|consen 107 SLAWNELDTNHLAAGLDKHRNDSSLKIWDINSLLTVPKESPLFSSSTLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQS 186 (783)
T ss_pred ccccccccHHHHHhhhhhhcccCCccceecccccCCCccccccccccccCccccccccCcchhhcccccchhhhhhhhhh
Confidence 999998 556677663 3668999999876 2221 1222 23345678888777 7888888889999999854
Q ss_pred CCCcccccceeeccccccEEEEEEcC-CCCEEEEecCCCcEEEEe-CCCccccceeeeccc----eEEEEE--EeC-CCE
Q 047325 228 GKGTKHSLAQTLLKQECAVTALVVSS-SRSIVYCGSSDGLVNFWE-REKQLSHGGVLKGHK----LAVLCL--AAA-GKL 298 (368)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~i~d-~~~~~~~~~~~~~~~----~~~~~~--~~~-~~~ 298 (368)
......-....+..+...| .++++++-. ||.|.+|| .++-+.+.......+ ..+..+ .|- ..+
T Consensus 187 -------~~~~~svnTk~vqG~tVdp~~~nY~cs~~-dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrtgl 258 (783)
T KOG1008|consen 187 -------LDSVSSVNTKYVQGITVDPFSPNYFCSNS-DGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRTGL 258 (783)
T ss_pred -------hhhhhhhhhhhcccceecCCCCCceeccc-cCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCcch
Confidence 2222222334566777888 777887665 99999999 443332222221111 124444 442 334
Q ss_pred EEEee-CCCeEEEEecC
Q 047325 299 VFSGS-ADKTICVWRRD 314 (368)
Q Consensus 299 l~~~~-~dg~i~iw~~~ 314 (368)
+++.. ..++|+.+++.
T Consensus 259 la~l~RdS~tIrlydi~ 275 (783)
T KOG1008|consen 259 LAVLSRDSITIRLYDIC 275 (783)
T ss_pred hhhhccCcceEEEeccc
Confidence 55555 45789999874
No 330
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=98.35 E-value=0.0015 Score=58.11 Aligned_cols=200 Identities=9% Similarity=0.090 Sum_probs=109.6
Q ss_pred ecCCEEEEccCCCcEEEEcCCcceec--ccCCCC------Ce--eEEEEeC-CEEEEEeCCCeEEEEeecCCCccccccC
Q 047325 52 ASKDLLYTGSDSKNIRVWKNLKEFCG--FKASSG------LV--KAIVISG-EKIFTGHQDGKIRVWKISPKNQSVHKRA 120 (368)
Q Consensus 52 ~~~~~l~s~~~dg~i~iw~~~~~~~~--~~~~~~------~v--~~~~~~~-~~l~s~~~dg~i~vw~~~~~~~~~~~~~ 120 (368)
+.++.++.++.++.+.-.|..+.... +..... .+ ..+...+ +.++.++.+|.|..+|.++++.......
T Consensus 59 v~~g~vy~~~~~g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~~~~~~V~v~~~~g~v~AlD~~TG~~~W~~~~ 138 (488)
T cd00216 59 VVDGDMYFTTSHSALFALDAATGKVLWRYDPKLPADRGCCDVVNRGVAYWDPRKVFFGTFDGRLVALDAETGKQVWKFGN 138 (488)
T ss_pred EECCEEEEeCCCCcEEEEECCCChhhceeCCCCCccccccccccCCcEEccCCeEEEecCCCeEEEEECCCCCEeeeecC
Confidence 34567777888899999987644222 211111 11 1223335 8899999999999999999987666544
Q ss_pred CccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcCCCCEEEEEe---------CCCcEEEEEccCCeEEEE
Q 047325 121 GTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCGLLYTAS---------WDRTFKVWRISDSKCLES 191 (368)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~---------~d~~i~iwd~~~~~~~~~ 191 (368)
....... +.-... ..+. +..++.++ .++.+..+|..+|+.+-.
T Consensus 139 ~~~~~~~----------------------~~i~ss----P~v~--~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W~ 190 (488)
T cd00216 139 NDQVPPG----------------------YTMTGA----PTIV--KKLVIIGSSGAEFFACGVRGALRAYDVETGKLLWR 190 (488)
T ss_pred CCCcCcc----------------------eEecCC----CEEE--CCEEEEeccccccccCCCCcEEEEEECCCCceeeE
Confidence 3210000 000000 1111 13344443 467899999999998877
Q ss_pred eecCCCc--------------------e-EEEEeCC-CCeEEEEcCCC------------------eEEEEEcCCCCCCc
Q 047325 192 VSAHDDA--------------------V-NSVVSSS-EGLIFTGSADG------------------TVKVWKREQHGKGT 231 (368)
Q Consensus 192 ~~~~~~~--------------------v-~~~~~~~-~~~l~~~~~dg------------------~i~i~d~~~~~~~~ 231 (368)
++..... + ...++.+ .+.++.++.++ .|.-+|.++++...
T Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~g~~vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~~W 270 (488)
T cd00216 191 FYTTEPDPNAFPTWGPDRQMWGPGGGTSWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKVKW 270 (488)
T ss_pred eeccCCCcCCCCCCCCCcceecCCCCCccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCEEE
Confidence 6542110 1 0123333 34777777665 68888887765422
Q ss_pred cccccee----eccccccE-EEEEEcCCCC---EEEEecCCCcEEEEeCCCccccce
Q 047325 232 KHSLAQT----LLKQECAV-TALVVSSSRS---IVYCGSSDGLVNFWEREKQLSHGG 280 (368)
Q Consensus 232 ~~~~~~~----~~~~~~~i-~~~~~~~~~~---~l~~~~~dg~i~i~d~~~~~~~~~ 280 (368)
....... ......++ ..+. .-++. .++.++.+|.+..+|.++++....
T Consensus 271 ~~~~~~~~~~~~~~~s~p~~~~~~-~~~g~~~~~V~~g~~~G~l~ald~~tG~~~W~ 326 (488)
T cd00216 271 FYQTTPHDLWDYDGPNQPSLADIK-PKDGKPVPAIVHAPKNGFFYVLDRTTGKLISA 326 (488)
T ss_pred EeeCCCCCCcccccCCCCeEEecc-ccCCCeeEEEEEECCCceEEEEECCCCcEeeE
Confidence 2111100 00111111 1111 01232 678888999999999999877644
No 331
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=98.29 E-value=0.0012 Score=53.19 Aligned_cols=209 Identities=13% Similarity=0.168 Sum_probs=124.0
Q ss_pred CCEEEEEeCCCe-EEEEeecCCCccccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcCCCCEEE
Q 047325 92 GEKIFTGHQDGK-IRVWKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCGLLY 170 (368)
Q Consensus 92 ~~~l~s~~~dg~-i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~ 170 (368)
+..++.+-.-|+ ..+||..+++....... ...+.|.|| -.|++||++|+
T Consensus 17 ~~avafaRRPG~~~~v~D~~~g~~~~~~~a------------------------~~gRHFyGH------g~fs~dG~~Ly 66 (305)
T PF07433_consen 17 PEAVAFARRPGTFALVFDCRTGQLLQRLWA------------------------PPGRHFYGH------GVFSPDGRLLY 66 (305)
T ss_pred CeEEEEEeCCCcEEEEEEcCCCceeeEEcC------------------------CCCCEEecC------EEEcCCCCEEE
Confidence 345555555554 55788877765433322 223445556 67999999999
Q ss_pred EEeC-----CCcEEEEEcc-CCeEEEEeecCCCceEEEEeCCCC-eEEEEcC------------------CCeEEEEEcC
Q 047325 171 TASW-----DRTFKVWRIS-DSKCLESVSAHDDAVNSVVSSSEG-LIFTGSA------------------DGTVKVWKRE 225 (368)
Q Consensus 171 ~~~~-----d~~i~iwd~~-~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~------------------dg~i~i~d~~ 225 (368)
+.-. .|.|-+||.. +.+.+.++..+.-....+.+.||+ .|+++.. +..+...|.+
T Consensus 67 tTEnd~~~g~G~IgVyd~~~~~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~ 146 (305)
T PF07433_consen 67 TTENDYETGRGVIGVYDAARGYRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDAR 146 (305)
T ss_pred EeccccCCCcEEEEEEECcCCcEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecC
Confidence 8743 5789999998 678888888887777788899999 6666531 2223334444
Q ss_pred CCCCCccccccee--e--ccccccEEEEEEcCCCCEEEEecCCCc-------EEEEeCCCcccccee------eeccceE
Q 047325 226 QHGKGTKHSLAQT--L--LKQECAVTALVVSSSRSIVYCGSSDGL-------VNFWEREKQLSHGGV------LKGHKLA 288 (368)
Q Consensus 226 ~~~~~~~~~~~~~--~--~~~~~~i~~~~~~~~~~~l~~~~~dg~-------i~i~d~~~~~~~~~~------~~~~~~~ 288 (368)
++. .+.+ + ..|+..|.-+++.++|..++..-..|. |.+++.......... ...+-..
T Consensus 147 sG~------ll~q~~Lp~~~~~lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~g~~~~~~~~p~~~~~~l~~Y~g 220 (305)
T PF07433_consen 147 SGA------LLEQVELPPDLHQLSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRRGGALRLLPAPEEQWRRLNGYIG 220 (305)
T ss_pred CCc------eeeeeecCccccccceeeEEecCCCcEEEEEecCCCCCccCCeEEEEcCCCcceeccCChHHHHhhCCceE
Confidence 332 1222 2 336678999999998876665544332 334443321111000 0112333
Q ss_pred EEEEEeCCCEEEE-eeCCCeEEEEecCCCceeeeEeeeccccCeeEEEEecCC
Q 047325 289 VLCLAAAGKLVFS-GSADKTICVWRRDGAIHTCLSVLTGHTGPVKCLAVEEDR 340 (368)
Q Consensus 289 ~~~~~~~~~~l~~-~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~l~~~~~~ 340 (368)
.++++.++.++++ +=.-|.+.+||..++ ..+.... -.-+-.++-.+++
T Consensus 221 SIa~~~~g~~ia~tsPrGg~~~~~d~~tg--~~~~~~~--l~D~cGva~~~~~ 269 (305)
T PF07433_consen 221 SIAADRDGRLIAVTSPRGGRVAVWDAATG--RLLGSVP--LPDACGVAPTDDG 269 (305)
T ss_pred EEEEeCCCCEEEEECCCCCEEEEEECCCC--CEeeccc--cCceeeeeecCCc
Confidence 4556667776654 446788999988877 3333321 2235566666666
No 332
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=98.27 E-value=6.8e-07 Score=76.66 Aligned_cols=206 Identities=13% Similarity=0.150 Sum_probs=128.1
Q ss_pred CCCEeEEEEcC--CCCEEEEEeCCCcEEEEEccCCeE--EEEeecCCCceEEEEeCCCC--eEEEEc----CCCeEEEEE
Q 047325 154 SDAVSCMSLDQ--DCGLLYTASWDRTFKVWRISDSKC--LESVSAHDDAVNSVVSSSEG--LIFTGS----ADGTVKVWK 223 (368)
Q Consensus 154 ~~~v~~~~~~~--~~~~l~~~~~d~~i~iwd~~~~~~--~~~~~~~~~~v~~~~~~~~~--~l~~~~----~dg~i~i~d 223 (368)
...+.|+++.- +...+++|..+|.|-+-.++...- -...+++..+.++++|++-. .|++|- .|..+.|||
T Consensus 56 tqy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwd 135 (783)
T KOG1008|consen 56 TQYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWD 135 (783)
T ss_pred CCCceeehhhcCCchhhhhhccccCceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCCcccee
Confidence 34566776654 335788999999999988765432 23445677889999999875 777764 367899999
Q ss_pred cCCCCCCcccccceeec-cccccEEEEEEcCCCCEEEEecCCCcEEEEeCCCccccceeeeccceEEEEEEe-CCCEEEE
Q 047325 224 REQHGKGTKHSLAQTLL-KQECAVTALVVSSSRSIVYCGSSDGLVNFWEREKQLSHGGVLKGHKLAVLCLAA-AGKLVFS 301 (368)
Q Consensus 224 ~~~~~~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~ 301 (368)
+...-.... ....+. +......+++|..+.+.+.+|.....+.++|++........+......-..+.| .+.++++
T Consensus 136 i~s~ltvPk--e~~~fs~~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~~~~~svnTk~vqG~tVdp~~~nY~cs 213 (783)
T KOG1008|consen 136 INSLLTVPK--ESPLFSSSTLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSLDSVSSVNTKYVQGITVDPFSPNYFCS 213 (783)
T ss_pred cccccCCCc--cccccccccccCccccccccCcchhhcccccchhhhhhhhhhhhhhhhhhhhhcccceecCCCCCceec
Confidence 976511000 011111 133445688999999999999999999999998443332233222222355666 6788877
Q ss_pred eeCCCeEEEEecCCCceeeeEeeecccc----CeeEEEEecCCeee-ecC---CcceEEEEEeeCCccc
Q 047325 302 GSADKTICVWRRDGAIHTCLSVLTGHTG----PVKCLAVEEDRDSS-SST---SSCAQRWIVYSGSLDK 362 (368)
Q Consensus 302 ~~~dg~i~iw~~~~~~~~~~~~~~~h~~----~v~~l~~~~~~~~~-~~~---~~~~~~w~l~sg~~D~ 362 (368)
-. ||.|.+||.......++..+..... .+..++|+|...-+ ++. ++.++.+.+-.-+.++
T Consensus 214 ~~-dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi~~v~t~~ 281 (783)
T KOG1008|consen 214 NS-DGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDICVVGTEG 281 (783)
T ss_pred cc-cCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCcchhhhhccCcceEEEecccccCCcc
Confidence 66 9999999943222233333332222 48999999986532 222 2334554444444333
No 333
>PRK02888 nitrous-oxide reductase; Validated
Probab=98.25 E-value=0.00032 Score=61.95 Aligned_cols=129 Identities=15% Similarity=0.037 Sum_probs=75.1
Q ss_pred CeEEEEEcCCCCCCcccccceeeccccccEEEEEEcCCCCEEEEec-CCCcEEEEeCCCccccc------------eeee
Q 047325 217 GTVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSSSRSIVYCGS-SDGLVNFWEREKQLSHG------------GVLK 283 (368)
Q Consensus 217 g~i~i~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~------------~~~~ 283 (368)
+.|.+.|.+...+. . ........-......+.++|||+++++++ .++++.++|+++.+... ....
T Consensus 296 n~V~VID~~t~~~~-~-~~v~~yIPVGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~vvaevev 373 (635)
T PRK02888 296 SKVPVVDGRKAANA-G-SALTRYVPVPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDAVVAEPEL 373 (635)
T ss_pred CEEEEEECCccccC-C-cceEEEEECCCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCccceEEEeecc
Confidence 45667776641000 0 01222233445577899999999887765 58899999998754311 1111
Q ss_pred ccceEEEEEEeCCCEEEEeeCCCeEEEEecCCCc--------eeeeEeeeccccCeeE-----EEEecCCeeeecCC
Q 047325 284 GHKLAVLCLAAAGKLVFSGSADKTICVWRRDGAI--------HTCLSVLTGHTGPVKC-----LAVEEDRDSSSSTS 347 (368)
Q Consensus 284 ~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~--------~~~~~~~~~h~~~v~~-----l~~~~~~~~~~~~~ 347 (368)
+-...-+.|..+|....+-.-|..|..|+++... ...+..+.-|-++-.- =.-.|||+++.+.+
T Consensus 374 GlGPLHTaFDg~G~aytslf~dsqv~kwn~~~a~~~~~g~~~~~v~~k~dV~y~pgh~~~~~g~t~~~dgk~l~~~n 450 (635)
T PRK02888 374 GLGPLHTAFDGRGNAYTTLFLDSQIVKWNIEAAIRAYKGEKVDPIVQKLDVHYQPGHNHASMGETKEADGKWLVSLN 450 (635)
T ss_pred CCCcceEEECCCCCEEEeEeecceeEEEehHHHHHHhccccCCcceecccCCCccceeeecCCCcCCCCCCEEEEcc
Confidence 1112236677778888888899999999987520 1334444444443222 22367787766554
No 334
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=98.22 E-value=0.0017 Score=52.35 Aligned_cols=180 Identities=14% Similarity=0.184 Sum_probs=104.7
Q ss_pred CCEEEEEe-----CCCeEEEEeecCC-CccccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcCC
Q 047325 92 GEKIFTGH-----QDGKIRVWKISPK-NQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQD 165 (368)
Q Consensus 92 ~~~l~s~~-----~dg~i~vw~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 165 (368)
|++|++.- ..|.|-|||.... +.... |..|.-.-..+.+.||
T Consensus 62 G~~LytTEnd~~~g~G~IgVyd~~~~~~ri~E--------------------------------~~s~GIGPHel~l~pD 109 (305)
T PF07433_consen 62 GRLLYTTENDYETGRGVIGVYDAARGYRRIGE--------------------------------FPSHGIGPHELLLMPD 109 (305)
T ss_pred CCEEEEeccccCCCcEEEEEEECcCCcEEEeE--------------------------------ecCCCcChhhEEEcCC
Confidence 78888764 3578999999832 21111 1113333345667777
Q ss_pred CCEEEEEe------------------CCCcEEEEEccCCeEEEEee----cCCCceEEEEeCCCCeEEEEcC-CC-----
Q 047325 166 CGLLYTAS------------------WDRTFKVWRISDSKCLESVS----AHDDAVNSVVSSSEGLIFTGSA-DG----- 217 (368)
Q Consensus 166 ~~~l~~~~------------------~d~~i~iwd~~~~~~~~~~~----~~~~~v~~~~~~~~~~l~~~~~-dg----- 217 (368)
++.|+++- .+..+...|..+|+.+.... .|...|..+++.++|.++.+.. .|
T Consensus 110 G~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~~~~~lSiRHLa~~~~G~V~~a~Q~qg~~~~~ 189 (305)
T PF07433_consen 110 GETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVELPPDLHQLSIRHLAVDGDGTVAFAMQYQGDPGDA 189 (305)
T ss_pred CCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeeeecCccccccceeeEEecCCCcEEEEEecCCCCCcc
Confidence 76666652 24466777888888877633 3677899999999996555543 22
Q ss_pred --eEEEEEcCCCCCCcccccceeeccccccEEEEEEcCCCCEEEEec-CCCcEEEEeCCCccccceeeeccceEEEEEEe
Q 047325 218 --TVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSSSRSIVYCGS-SDGLVNFWEREKQLSHGGVLKGHKLAVLCLAA 294 (368)
Q Consensus 218 --~i~i~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~ 294 (368)
-|-+++....-. ...............+-+|++++++..+++.+ ..+.+.+||..++....... -..++.+.+
T Consensus 190 ~PLva~~~~g~~~~-~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsPrGg~~~~~d~~tg~~~~~~~---l~D~cGva~ 265 (305)
T PF07433_consen 190 PPLVALHRRGGALR-LLPAPEEQWRRLNGYIGSIAADRDGRLIAVTSPRGGRVAVWDAATGRLLGSVP---LPDACGVAP 265 (305)
T ss_pred CCeEEEEcCCCcce-eccCChHHHHhhCCceEEEEEeCCCCEEEEECCCCCEEEEEECCCCCEeeccc---cCceeeeee
Confidence 133333322100 00001111233456789999999998775544 67789999999876653222 122344555
Q ss_pred CC-CEEEEeeCCCeE
Q 047325 295 AG-KLVFSGSADKTI 308 (368)
Q Consensus 295 ~~-~~l~~~~~dg~i 308 (368)
.. .++++. ..|.+
T Consensus 266 ~~~~f~~ss-G~G~~ 279 (305)
T PF07433_consen 266 TDDGFLVSS-GQGQL 279 (305)
T ss_pred cCCceEEeC-CCccE
Confidence 32 345544 44553
No 335
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=98.21 E-value=0.00021 Score=60.01 Aligned_cols=177 Identities=14% Similarity=0.160 Sum_probs=106.7
Q ss_pred CcEEEEEccCCeEEEEeecC-CCceEEE---EeCC-----CCeEEEEcC----------CCeEEEEEcCCC-CCCccccc
Q 047325 176 RTFKVWRISDSKCLESVSAH-DDAVNSV---VSSS-----EGLIFTGSA----------DGTVKVWKREQH-GKGTKHSL 235 (368)
Q Consensus 176 ~~i~iwd~~~~~~~~~~~~~-~~~v~~~---~~~~-----~~~l~~~~~----------dg~i~i~d~~~~-~~~~~~~~ 235 (368)
+.|++.|..+.+.+..+.-. ...+.++ .+.. ..++++|+. .|.|.++++... ....+...
T Consensus 2 s~i~l~d~~~~~~~~~~~l~~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~ 81 (321)
T PF03178_consen 2 SSIRLVDPTTFEVLDSFELEPNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKL 81 (321)
T ss_dssp -EEEEEETTTSSEEEEEEEETTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEE
T ss_pred cEEEEEeCCCCeEEEEEECCCCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEEEE
Confidence 46888998888877666532 3344444 3443 227776653 289999999873 11111122
Q ss_pred ceeeccccccEEEEEEcCCCCEEEEecCCCcEEEEeCCCcc-ccceeeeccceEEEEEEeCCCEEEEeeCCCeEEEEecC
Q 047325 236 AQTLLKQECAVTALVVSSSRSIVYCGSSDGLVNFWEREKQL-SHGGVLKGHKLAVLCLAAAGKLVFSGSADKTICVWRRD 314 (368)
Q Consensus 236 ~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~ 314 (368)
. ......++|++++-- ++. |+++. .+.|.+|++.... ............+.++...+++++.|..-..+.++.++
T Consensus 82 i-~~~~~~g~V~ai~~~-~~~-lv~~~-g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~~~~~I~vgD~~~sv~~~~~~ 157 (321)
T PF03178_consen 82 I-HSTEVKGPVTAICSF-NGR-LVVAV-GNKLYVYDLDNSKTLLKKAFYDSPFYITSLSVFKNYILVGDAMKSVSLLRYD 157 (321)
T ss_dssp E-EEEEESS-EEEEEEE-TTE-EEEEE-TTEEEEEEEETTSSEEEEEEE-BSSSEEEEEEETTEEEEEESSSSEEEEEEE
T ss_pred E-EEEeecCcceEhhhh-CCE-EEEee-cCEEEEEEccCcccchhhheecceEEEEEEeccccEEEEEEcccCEEEEEEE
Confidence 2 223456889988866 344 44443 4789999998766 33333334455778888889999999998899988766
Q ss_pred CCceeeeEee--eccccCeeEEEEecCCeeeecCCcceEEEEEee
Q 047325 315 GAIHTCLSVL--TGHTGPVKCLAVEEDRDSSSSTSSCAQRWIVYS 357 (368)
Q Consensus 315 ~~~~~~~~~~--~~h~~~v~~l~~~~~~~~~~~~~~~~~~w~l~s 357 (368)
..... +..+ ......++++.|-+++..++.+|..+.++.+--
T Consensus 158 ~~~~~-l~~va~d~~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~ 201 (321)
T PF03178_consen 158 EENNK-LILVARDYQPRWVTAAEFLVDEDTIIVGDKDGNLFVLRY 201 (321)
T ss_dssp TTTE--EEEEEEESS-BEEEEEEEE-SSSEEEEEETTSEEEEEEE
T ss_pred ccCCE-EEEEEecCCCccEEEEEEecCCcEEEEEcCCCeEEEEEE
Confidence 43221 2222 223456889999866666666766666554443
No 336
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=98.17 E-value=0.00052 Score=59.40 Aligned_cols=225 Identities=12% Similarity=0.059 Sum_probs=108.4
Q ss_pred ccCcCCcEEEEEecCC--EEEEccCCCcEEEEcCCcceecccCCCCCeeEEEEe-CCEEEEEeCCCeEEEEeecCCCccc
Q 047325 40 LVREEGHIYSLAASKD--LLYTGSDSKNIRVWKNLKEFCGFKASSGLVKAIVIS-GEKIFTGHQDGKIRVWKISPKNQSV 116 (368)
Q Consensus 40 ~~~h~~~i~~~~~~~~--~l~s~~~dg~i~iw~~~~~~~~~~~~~~~v~~~~~~-~~~l~s~~~dg~i~vw~~~~~~~~~ 116 (368)
+....-....+.++|+ +++. +.||...|+......... .+.-....|. .+.+++-...++|.++.--......
T Consensus 28 lg~~~~~p~~ls~npngr~v~V-~g~geY~iyt~~~~r~k~---~G~g~~~vw~~~n~yAv~~~~~~I~I~kn~~~~~~k 103 (443)
T PF04053_consen 28 LGSCEIYPQSLSHNPNGRFVLV-CGDGEYEIYTALAWRNKA---FGSGLSFVWSSRNRYAVLESSSTIKIYKNFKNEVVK 103 (443)
T ss_dssp EEE-SS--SEEEE-TTSSEEEE-EETTEEEEEETTTTEEEE---EEE-SEEEE-TSSEEEEE-TTS-EEEEETTEE-TT-
T ss_pred CCCCCcCCeeEEECCCCCEEEE-EcCCEEEEEEccCCcccc---cCceeEEEEecCccEEEEECCCeEEEEEcCccccce
Confidence 3334445677888765 5555 667888888743222211 2334456666 5677777778889996322221111
Q ss_pred cccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcCCCCEEEEEeCCCcEEEEEccCCeEEEEeecCC
Q 047325 117 HKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCGLLYTASWDRTFKVWRISDSKCLESVSAHD 196 (368)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~ 196 (368)
... ....+..+-. |.+|...+. +.|.+||..+++.+..+...
T Consensus 104 ~i~---------------------------------~~~~~~~If~---G~LL~~~~~-~~i~~yDw~~~~~i~~i~v~- 145 (443)
T PF04053_consen 104 SIK---------------------------------LPFSVEKIFG---GNLLGVKSS-DFICFYDWETGKLIRRIDVS- 145 (443)
T ss_dssp -------------------------------------SS-EEEEE----SSSEEEEET-TEEEEE-TTT--EEEEESS--
T ss_pred EEc---------------------------------CCcccceEEc---CcEEEEECC-CCEEEEEhhHcceeeEEecC-
Confidence 111 1112223322 777777765 48999999999999999743
Q ss_pred CceEEEEeCCCC-eEEEEcCCCeEEEEEcCCC------CCCcccccceeeccccccEEEEEEcCCCCEEEEecCCCcEEE
Q 047325 197 DAVNSVVSSSEG-LIFTGSADGTVKVWKREQH------GKGTKHSLAQTLLKQECAVTALVVSSSRSIVYCGSSDGLVNF 269 (368)
Q Consensus 197 ~~v~~~~~~~~~-~l~~~~~dg~i~i~d~~~~------~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i 269 (368)
+|..+.|++++ +++..+ +..+.+++.+.. ..+.. ............|.+.+|..+ .++-.+.. .++.
T Consensus 146 -~vk~V~Ws~~g~~val~t-~~~i~il~~~~~~~~~~~~~g~e-~~f~~~~E~~~~IkSg~W~~d--~fiYtT~~-~lkY 219 (443)
T PF04053_consen 146 -AVKYVIWSDDGELVALVT-KDSIYILKYNLEAVAAIPEEGVE-DAFELIHEISERIKSGCWVED--CFIYTTSN-HLKY 219 (443)
T ss_dssp -E-EEEEE-TTSSEEEEE--S-SEEEEEE-HHHHHHBTTTB-G-GGEEEEEEE-S--SEEEEETT--EEEEE-TT-EEEE
T ss_pred -CCcEEEEECCCCEEEEEe-CCeEEEEEecchhcccccccCch-hceEEEEEecceeEEEEEEcC--EEEEEcCC-eEEE
Confidence 48999999999 665555 447777775422 00000 011222222567888888755 44444443 5555
Q ss_pred EeCCCccccceeeeccceEEEEEEeCCCEEEEeeCCCeEEEEecC
Q 047325 270 WEREKQLSHGGVLKGHKLAVLCLAAAGKLVFSGSADKTICVWRRD 314 (368)
Q Consensus 270 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~ 314 (368)
+..+....-.....+..++.+.+..+.++....|+.+..+.++
T Consensus 220 --l~~Ge~~~i~~ld~~~yllgy~~~~~~ly~~Dr~~~v~~~~ld 262 (443)
T PF04053_consen 220 --LVNGETGIIAHLDKPLYLLGYLPKENRLYLIDRDGNVISYELD 262 (443)
T ss_dssp --EETTEEEEEEE-SS--EEEEEETTTTEEEEE-TT--EEEEE--
T ss_pred --EEcCCcceEEEcCCceEEEEEEccCCEEEEEECCCCEEEEEEC
Confidence 2223222111123344556666666788888888888888765
No 337
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=98.16 E-value=0.0021 Score=55.00 Aligned_cols=229 Identities=14% Similarity=0.172 Sum_probs=119.4
Q ss_pred cEEEEEecCC--EEEEccCCCcEEEEcCCc---------------------------c------------------eecc
Q 047325 46 HIYSLAASKD--LLYTGSDSKNIRVWKNLK---------------------------E------------------FCGF 78 (368)
Q Consensus 46 ~i~~~~~~~~--~l~s~~~dg~i~iw~~~~---------------------------~------------------~~~~ 78 (368)
.|+.+.|.++ -|++|...|.|.||.... . ...+
T Consensus 3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l~ 82 (395)
T PF08596_consen 3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTLL 82 (395)
T ss_dssp -EEEEEEETTTTEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEEE
T ss_pred eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhhe
Confidence 4778888766 888899999999985210 0 0012
Q ss_pred cCCCCCeeEEEEe-CCEEEEEeCCCeEEEEeecCCCccccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCE
Q 047325 79 KASSGLVKAIVIS-GEKIFTGHQDGKIRVWKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAV 157 (368)
Q Consensus 79 ~~~~~~v~~~~~~-~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 157 (368)
....++|++++.+ =.+++.|..+|.+.|.|++............. ..-......|
T Consensus 83 ~~~~g~vtal~~S~iGFvaigy~~G~l~viD~RGPavI~~~~i~~~------------------------~~~~~~~~~v 138 (395)
T PF08596_consen 83 DAKQGPVTALKNSDIGFVAIGYESGSLVVIDLRGPAVIYNENIRES------------------------FLSKSSSSYV 138 (395)
T ss_dssp ---S-SEEEEEE-BTSEEEEEETTSEEEEEETTTTEEEEEEEGGG--------------------------T-SS----E
T ss_pred eccCCcEeEEecCCCcEEEEEecCCcEEEEECCCCeEEeecccccc------------------------ccccccccCe
Confidence 3346789999997 67999999999999999977665443222110 0000134567
Q ss_pred eEEEEcC-----CC---CEEEEEeCCCcEEEEEcc--C-Ce----EEEEeecCCCceEEEE-eCCC--------------
Q 047325 158 SCMSLDQ-----DC---GLLYTASWDRTFKVWRIS--D-SK----CLESVSAHDDAVNSVV-SSSE-------------- 207 (368)
Q Consensus 158 ~~~~~~~-----~~---~~l~~~~~d~~i~iwd~~--~-~~----~~~~~~~~~~~v~~~~-~~~~-------------- 207 (368)
+++.|.. |+ -.+++|...|.+.+|.+. . +. .......+.++|..+. +..+
T Consensus 139 t~ieF~vm~~~~D~ySSi~L~vGTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~ 218 (395)
T PF08596_consen 139 TSIEFSVMTLGGDGYSSICLLVGTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQG 218 (395)
T ss_dssp EEEEEEEEE-TTSSSEEEEEEEEETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHG
T ss_pred eEEEEEEEecCCCcccceEEEEEeCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhc
Confidence 7777752 33 478999999999999774 1 21 1122223445555443 2111
Q ss_pred ---C----eEEEEcCCCeEEEEEcCCCCCCcccccceeeccccccEEEEEEc-----CCCCEEEEecCCCcEEEEeCCCc
Q 047325 208 ---G----LIFTGSADGTVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVS-----SSRSIVYCGSSDGLVNFWEREKQ 275 (368)
Q Consensus 208 ---~----~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-----~~~~~l~~~~~dg~i~i~d~~~~ 275 (368)
+ .++....+..++++..-..+. .............+.+- ..+..|++-..+|.+++|.+..-
T Consensus 219 l~~g~~i~g~vVvvSe~~irv~~~~~~k~------~~K~~~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~L 292 (395)
T PF08596_consen 219 LSKGISIPGYVVVVSESDIRVFKPPKSKG------AHKSFDDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSL 292 (395)
T ss_dssp GGGT----EEEEEE-SSEEEEE-TT---E------EEEE-SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT-
T ss_pred cccCCCcCcEEEEEcccceEEEeCCCCcc------cceeeccccccceEEEEeecccCCceEEEEEECCCcEEEEECCCc
Confidence 1 244445577899998865421 22222222223334442 35668888899999999999875
Q ss_pred cccceeeecc-----ceEEEEEEeCCCEEEEeeC
Q 047325 276 LSHGGVLKGH-----KLAVLCLAAAGKLVFSGSA 304 (368)
Q Consensus 276 ~~~~~~~~~~-----~~~~~~~~~~~~~l~~~~~ 304 (368)
+.+....... ...-.++..+|+.++-.+.
T Consensus 293 kei~~~~l~~~~d~~~~~~ssis~~Gdi~~~~gp 326 (395)
T PF08596_consen 293 KEIKSVSLPPPLDSRRLSSSSISRNGDIFYWTGP 326 (395)
T ss_dssp -EEEEEE-SS---HHHHTT-EE-TTS-EEEE-SS
T ss_pred hHhhcccCCCccccccccccEECCCCCEEEEeCc
Confidence 4443222211 1112556777776655543
No 338
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=98.13 E-value=0.00014 Score=62.66 Aligned_cols=186 Identities=13% Similarity=0.038 Sum_probs=108.6
Q ss_pred cCCCEeEEEEcCCCCEEEEEe---CC-CcEEEEEccCCeEEEEeecCCCceEEEEeCCCC--eEEEEcCCCeE--EEEEc
Q 047325 153 HSDAVSCMSLDQDCGLLYTAS---WD-RTFKVWRISDSKCLESVSAHDDAVNSVVSSSEG--LIFTGSADGTV--KVWKR 224 (368)
Q Consensus 153 ~~~~v~~~~~~~~~~~l~~~~---~d-~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~--~l~~~~~dg~i--~i~d~ 224 (368)
-...+..-+|+|++..++-.. .. ..+.++|+.+++....+. ..+.-..-.|+||| .+++...||.. +++|+
T Consensus 191 ~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~-~~g~~~~P~fspDG~~l~f~~~rdg~~~iy~~dl 269 (425)
T COG0823 191 SGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILN-FNGNNGAPAFSPDGSKLAFSSSRDGSPDIYLMDL 269 (425)
T ss_pred cCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeec-cCCccCCccCCCCCCEEEEEECCCCCccEEEEcC
Confidence 344566678888887654442 22 358999999887655544 22333456899999 66666777764 55565
Q ss_pred CCCCCCcccccceeeccccccEEEEEEcCCCCEEEEec-CCC--cEEEEeCCCccccceeeeccceEEEEEEeCCCEEEE
Q 047325 225 EQHGKGTKHSLAQTLLKQECAVTALVVSSSRSIVYCGS-SDG--LVNFWEREKQLSHGGVLKGHKLAVLCLAAAGKLVFS 301 (368)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg--~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 301 (368)
.... ...+....+.-..=.|+|+|+.++-.+ ..| .|.+++.+................-.++|||++|+.
T Consensus 270 ~~~~-------~~~Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~~riT~~~~~~~~p~~SpdG~~i~~ 342 (425)
T COG0823 270 DGKN-------LPRLTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQVTRLTFSGGGNSNPVWSPDGDKIVF 342 (425)
T ss_pred CCCc-------ceecccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCceeEeeccCCCCcCccCCCCCCEEEE
Confidence 5432 122333333333667999999877654 344 466667666544333333333335678899998887
Q ss_pred eeC-CCe--EEEEecCCCceeeeEeeeccccCeeEEEEecCCeeeecCCcc
Q 047325 302 GSA-DKT--ICVWRRDGAIHTCLSVLTGHTGPVKCLAVEEDRDSSSSTSSC 349 (368)
Q Consensus 302 ~~~-dg~--i~iw~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~ 349 (368)
.+. +|. |.+.++.+... .+.+ .+......-.|.+++..+...++.
T Consensus 343 ~~~~~g~~~i~~~~~~~~~~--~~~l-t~~~~~e~ps~~~ng~~i~~~s~~ 390 (425)
T COG0823 343 ESSSGGQWDIDKNDLASGGK--IRIL-TSTYLNESPSWAPNGRMIMFSSGQ 390 (425)
T ss_pred EeccCCceeeEEeccCCCCc--EEEc-cccccCCCCCcCCCCceEEEeccC
Confidence 764 344 55555544421 2222 233344455677777766554433
No 339
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=98.07 E-value=0.001 Score=44.54 Aligned_cols=100 Identities=25% Similarity=0.303 Sum_probs=68.7
Q ss_pred EeEEEEcC---C-CCEEEEEeCCCcEEEEEccCCeEEEEeecCCCceEEEEeCCCCeEEEEcCCCeEEEEEcCCCCCCcc
Q 047325 157 VSCMSLDQ---D-CGLLYTASWDRTFKVWRISDSKCLESVSAHDDAVNSVVSSSEGLIFTGSADGTVKVWKREQHGKGTK 232 (368)
Q Consensus 157 v~~~~~~~---~-~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~ 232 (368)
|+++++.. + .+.|++|+.|..|++|+- .+.+.++.. ...|.++.-...+.++.+..+|+|-+|+-...
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~--~e~~~Ei~e-~~~v~~L~~~~~~~F~Y~l~NGTVGvY~~~~R----- 73 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKG--DEIVAEITE-TDKVTSLCSLGGGRFAYALANGTVGVYDRSQR----- 73 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeC--CcEEEEEec-ccceEEEEEcCCCEEEEEecCCEEEEEeCcce-----
Confidence 55666544 3 258999999999999984 466777764 45678888777789999999999999986431
Q ss_pred cccceeeccccccEEEEEEcC-CC---CEEEEecCCCcEE
Q 047325 233 HSLAQTLLKQECAVTALVVSS-SR---SIVYCGSSDGLVN 268 (368)
Q Consensus 233 ~~~~~~~~~~~~~i~~~~~~~-~~---~~l~~~~~dg~i~ 268 (368)
.-..+ .+..+.++++.. ++ ..|++|-.+|.|-
T Consensus 74 ---lWRiK-SK~~~~~~~~~D~~gdG~~eLI~GwsnGkve 109 (111)
T PF14783_consen 74 ---LWRIK-SKNQVTSMAFYDINGDGVPELIVGWSNGKVE 109 (111)
T ss_pred ---eeeec-cCCCeEEEEEEcCCCCCceEEEEEecCCeEE
Confidence 11111 222355555443 32 3788898888774
No 340
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=98.05 E-value=0.0025 Score=55.31 Aligned_cols=189 Identities=13% Similarity=0.102 Sum_probs=100.0
Q ss_pred cCCCEeEEEEcCCCCEEEEEeCCCcEEEEEccCCeEEEEeecCCCceEEEEeCCCCeEEEEcCCCeEEEE-EcCCCCCCc
Q 047325 153 HSDAVSCMSLDQDCGLLYTASWDRTFKVWRISDSKCLESVSAHDDAVNSVVSSSEGLIFTGSADGTVKVW-KREQHGKGT 231 (368)
Q Consensus 153 ~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~dg~i~i~-d~~~~~~~~ 231 (368)
.......+.++|+++.+++++ ||.-.|+.....+.... +.-..+.|.+.+.+++-...+.|.++ ++...
T Consensus 31 ~~~~p~~ls~npngr~v~V~g-~geY~iyt~~~~r~k~~-----G~g~~~vw~~~n~yAv~~~~~~I~I~kn~~~~---- 100 (443)
T PF04053_consen 31 CEIYPQSLSHNPNGRFVLVCG-DGEYEIYTALAWRNKAF-----GSGLSFVWSSRNRYAVLESSSTIKIYKNFKNE---- 100 (443)
T ss_dssp -SS--SEEEE-TTSSEEEEEE-TTEEEEEETTTTEEEEE-----EE-SEEEE-TSSEEEEE-TTS-EEEEETTEE-----
T ss_pred CCcCCeeEEECCCCCEEEEEc-CCEEEEEEccCCccccc-----CceeEEEEecCccEEEEECCCeEEEEEcCccc----
Confidence 444578899999999998865 68888888544443322 33456788887788888888999996 33221
Q ss_pred ccccceeeccccccEEEEEEcCCCCEEEEecCCCcEEEEeCCCccccceeeeccceEEEEEEeCCCEEEEeeCCCeEEEE
Q 047325 232 KHSLAQTLLKQECAVTALVVSSSRSIVYCGSSDGLVNFWEREKQLSHGGVLKGHKLAVLCLAAAGKLVFSGSADKTICVW 311 (368)
Q Consensus 232 ~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iw 311 (368)
....+. ....+..+-. |..|...+.+ .|.+||.+++.... ........-+-+++++++++..+.+ .+.|+
T Consensus 101 ---~~k~i~-~~~~~~~If~---G~LL~~~~~~-~i~~yDw~~~~~i~-~i~v~~vk~V~Ws~~g~~val~t~~-~i~il 170 (443)
T PF04053_consen 101 ---VVKSIK-LPFSVEKIFG---GNLLGVKSSD-FICFYDWETGKLIR-RIDVSAVKYVIWSDDGELVALVTKD-SIYIL 170 (443)
T ss_dssp ---TT------SS-EEEEE----SSSEEEEETT-EEEEE-TTT--EEE-EESS-E-EEEEE-TTSSEEEEE-S--SEEEE
T ss_pred ---cceEEc-CCcccceEEc---CcEEEEECCC-CEEEEEhhHcceee-EEecCCCcEEEEECCCCEEEEEeCC-eEEEE
Confidence 111111 1112344433 7777776554 79999999876653 3332323445667788999988866 67787
Q ss_pred ecCCC---------ceeeeEeeeccccCeeEEEEecCCeeeecCCcceEEEEEeeCCcccccc
Q 047325 312 RRDGA---------IHTCLSVLTGHTGPVKCLAVEEDRDSSSSTSSCAQRWIVYSGSLDKSDD 365 (368)
Q Consensus 312 ~~~~~---------~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~w~l~sg~~D~~v~ 365 (368)
+.+.. -...+..+..-...|.+..|..+ -++-+..+ ++-+ ..+|+-++|+
T Consensus 171 ~~~~~~~~~~~~~g~e~~f~~~~E~~~~IkSg~W~~d-~fiYtT~~--~lkY-l~~Ge~~~i~ 229 (443)
T PF04053_consen 171 KYNLEAVAAIPEEGVEDAFELIHEISERIKSGCWVED-CFIYTTSN--HLKY-LVNGETGIIA 229 (443)
T ss_dssp EE-HHHHHHBTTTB-GGGEEEEEEE-S--SEEEEETT-EEEEE-TT--EEEE-EETTEEEEEE
T ss_pred EecchhcccccccCchhceEEEEEecceeEEEEEEcC-EEEEEcCC--eEEE-EEcCCcceEE
Confidence 65432 00122333223568999999988 44444444 4434 4555555543
No 341
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=98.05 E-value=0.00054 Score=45.87 Aligned_cols=62 Identities=23% Similarity=0.327 Sum_probs=47.8
Q ss_pred EEEEEe---cCC---EEEEccCCCcEEEEcCCcceecccCCCCCeeEEEEe-CCEEEEEeCCCeEEEEee
Q 047325 47 IYSLAA---SKD---LLYTGSDSKNIRVWKNLKEFCGFKASSGLVKAIVIS-GEKIFTGHQDGKIRVWKI 109 (368)
Q Consensus 47 i~~~~~---~~~---~l~s~~~dg~i~iw~~~~~~~~~~~~~~~v~~~~~~-~~~l~s~~~dg~i~vw~~ 109 (368)
|++|++ +++ .|++|+.|..||+|+-...+...... ..|+++... +.+++.+..+|+|-+|+-
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~e~~~Ei~e~-~~v~~L~~~~~~~F~Y~l~NGTVGvY~~ 70 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGDEIVAEITET-DKVTSLCSLGGGRFAYALANGTVGVYDR 70 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeCCcEEEEEecc-cceEEEEEcCCCEEEEEecCCEEEEEeC
Confidence 455554 433 89999999999999988776666654 456666655 889999999999999975
No 342
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.04 E-value=0.0033 Score=48.77 Aligned_cols=138 Identities=12% Similarity=0.143 Sum_probs=87.5
Q ss_pred CCEEEEEeCCCeEEEEeecCCCccccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcCCCCEEEE
Q 047325 92 GEKIFTGHQDGKIRVWKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCGLLYT 171 (368)
Q Consensus 92 ~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~ 171 (368)
..+++.|+..+.+..-|..+++.......+ .++.+-+.- -|++++.
T Consensus 23 kT~v~igSHs~~~~avd~~sG~~~We~ilg---------------------------------~RiE~sa~v-vgdfVV~ 68 (354)
T KOG4649|consen 23 KTLVVIGSHSGIVIAVDPQSGNLIWEAILG---------------------------------VRIECSAIV-VGDFVVL 68 (354)
T ss_pred ceEEEEecCCceEEEecCCCCcEEeehhhC---------------------------------ceeeeeeEE-ECCEEEE
Confidence 467888888999988888888765544432 222222222 3667999
Q ss_pred EeCCCcEEEEEccCCeEEEEeecCCCceEEEEeCCCC-eEEEEcCCCeEEEEEcCCCCCCcccccceeeccccccEEEEE
Q 047325 172 ASWDRTFKVWRISDSKCLESVSAHDDAVNSVVSSSEG-LIFTGSADGTVKVWKREQHGKGTKHSLAQTLLKQECAVTALV 250 (368)
Q Consensus 172 ~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~i~~~~ 250 (368)
|+..|.+++.+..+|.....+...+.--......+++ .+..|+.|+..+..|.+... ++...+-..+...+-+
T Consensus 69 GCy~g~lYfl~~~tGs~~w~f~~~~~vk~~a~~d~~~glIycgshd~~~yalD~~~~~------cVykskcgG~~f~sP~ 142 (354)
T KOG4649|consen 69 GCYSGGLYFLCVKTGSQIWNFVILETVKVRAQCDFDGGLIYCGSHDGNFYALDPKTYG------CVYKSKCGGGTFVSPV 142 (354)
T ss_pred EEccCcEEEEEecchhheeeeeehhhhccceEEcCCCceEEEecCCCcEEEecccccc------eEEecccCCceeccce
Confidence 9999999999999998887776433221223345555 99999999999999998653 3333332333333344
Q ss_pred EcCCCCEEEEecCCCcEEE
Q 047325 251 VSSSRSIVYCGSSDGLVNF 269 (368)
Q Consensus 251 ~~~~~~~l~~~~~dg~i~i 269 (368)
..|....|..+...|.+.-
T Consensus 143 i~~g~~sly~a~t~G~vla 161 (354)
T KOG4649|consen 143 IAPGDGSLYAAITAGAVLA 161 (354)
T ss_pred ecCCCceEEEEeccceEEE
Confidence 5553333444444454433
No 343
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=98.03 E-value=0.0013 Score=56.80 Aligned_cols=167 Identities=14% Similarity=0.184 Sum_probs=91.1
Q ss_pred cEEEEEccCCeEEEEeecCCCceEEEEeCCCCeEEEEcCCCeEEEEEcCCCCCCccccc---ceeeccccccEEEEEEcC
Q 047325 177 TFKVWRISDSKCLESVSAHDDAVNSVVSSSEGLIFTGSADGTVKVWKREQHGKGTKHSL---AQTLLKQECAVTALVVSS 253 (368)
Q Consensus 177 ~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~---~~~~~~~~~~i~~~~~~~ 253 (368)
.|.+|+. .|+.+..+.-..+.+.++.|..+..|++...||.+++||+.... .... .....-.+..+....+..
T Consensus 62 ~I~iys~-sG~ll~~i~w~~~~iv~~~wt~~e~LvvV~~dG~v~vy~~~G~~---~fsl~~~i~~~~v~e~~i~~~~~~~ 137 (410)
T PF04841_consen 62 SIQIYSS-SGKLLSSIPWDSGRIVGMGWTDDEELVVVQSDGTVRVYDLFGEF---QFSLGEEIEEEKVLECRIFAIWFYK 137 (410)
T ss_pred EEEEECC-CCCEeEEEEECCCCEEEEEECCCCeEEEEEcCCEEEEEeCCCce---eechhhhccccCcccccccccccCC
Confidence 5999986 67777777766689999999998888888999999999986331 0111 111111122233333433
Q ss_pred CCCEEEEecCCCcEEEEeC-CCccccce--eee-----cc--ce--EEEEEEeCCCEEEEeeCCCeEEEEecCCCceeee
Q 047325 254 SRSIVYCGSSDGLVNFWER-EKQLSHGG--VLK-----GH--KL--AVLCLAAAGKLVFSGSADKTICVWRRDGAIHTCL 321 (368)
Q Consensus 254 ~~~~l~~~~~dg~i~i~d~-~~~~~~~~--~~~-----~~--~~--~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~ 321 (368)
+| ++.-..++.+.+..- ........ ... .+ .. .+..+..+....+....++.+.+-+-... .
T Consensus 138 ~G--ivvLt~~~~~~~v~n~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~l~~~~~~~i~~~~g~~i~~i~~~~~--~-- 211 (410)
T PF04841_consen 138 NG--IVVLTGNNRFYVVNNIDEPVKLRRLPEIPGLWTKFHWWPSWTVIPLLSSDRVVEILLANGETIYIIDENSF--K-- 211 (410)
T ss_pred CC--EEEECCCCeEEEEeCccccchhhccccCCCcccccccccccccceEeecCcceEEEEecCCEEEEEEcccc--c--
Confidence 55 333334455554432 21111100 000 00 00 11223334444444444555553332211 0
Q ss_pred EeeeccccCeeEEEEecCCeeeecCCcceEEEEE
Q 047325 322 SVLTGHTGPVKCLAVEEDRDSSSSTSSCAQRWIV 355 (368)
Q Consensus 322 ~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~w~l 355 (368)
.+. ..+++..|+.||+++++|.-..++.+|.+
T Consensus 212 -~i~-~~~~i~~iavSpng~~iAl~t~~g~l~v~ 243 (410)
T PF04841_consen 212 -QID-SDGPIIKIAVSPNGKFIALFTDSGNLWVV 243 (410)
T ss_pred -ccc-CCCCeEEEEECCCCCEEEEEECCCCEEEE
Confidence 111 24689999999999999887777777754
No 344
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=98.02 E-value=0.00086 Score=61.55 Aligned_cols=137 Identities=9% Similarity=0.154 Sum_probs=86.7
Q ss_pred cCCCcEEEEcCCc--ceecccCCCCC-eeEEEEe-------CCEEEEEeCCCeEEEEeecCCCccccccCCccccceeee
Q 047325 61 SDSKNIRVWKNLK--EFCGFKASSGL-VKAIVIS-------GEKIFTGHQDGKIRVWKISPKNQSVHKRAGTLPTLKDIF 130 (368)
Q Consensus 61 ~~dg~i~iw~~~~--~~~~~~~~~~~-v~~~~~~-------~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~ 130 (368)
.....|+-.|++. .+..+..|... |..++.. +...+.|-.+..+..||.+-..........
T Consensus 501 ~~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~--------- 571 (794)
T PF08553_consen 501 NNPNKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQS--------- 571 (794)
T ss_pred CCCCceEEEecCCCcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCceeeccc---------
Confidence 3344555555553 24455555433 6666654 345667777888888888743211100000
Q ss_pred eccCCCCceeEecccceeeeeecCCCEeEEEEcCCCCEEEEEeCCCcEEEEEccCCeEEEEeecCCCceEEEEeCCCCeE
Q 047325 131 KSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCGLLYTASWDRTFKVWRISDSKCLESVSAHDDAVNSVVSSSEGLI 210 (368)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~l 210 (368)
..+ .......|++-..+| +||+|+.+|.|++||-...+....+++-..+|..|..+.||..
T Consensus 572 -----------------k~Y-~~~~~Fs~~aTt~~G-~iavgs~~G~IRLyd~~g~~AKT~lp~lG~pI~~iDvt~DGkw 632 (794)
T PF08553_consen 572 -----------------KQY-SSKNNFSCFATTEDG-YIAVGSNKGDIRLYDRLGKRAKTALPGLGDPIIGIDVTADGKW 632 (794)
T ss_pred -----------------ccc-ccCCCceEEEecCCc-eEEEEeCCCcEEeecccchhhhhcCCCCCCCeeEEEecCCCcE
Confidence 000 144567788887776 7999999999999995433444556677899999999999944
Q ss_pred EEEcCCCeEEEEEcC
Q 047325 211 FTGSADGTVKVWKRE 225 (368)
Q Consensus 211 ~~~~~dg~i~i~d~~ 225 (368)
+.+..+..|.+++..
T Consensus 633 ilaTc~tyLlLi~t~ 647 (794)
T PF08553_consen 633 ILATCKTYLLLIDTL 647 (794)
T ss_pred EEEeecceEEEEEEe
Confidence 445556678888763
No 345
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=97.97 E-value=0.0025 Score=53.48 Aligned_cols=141 Identities=14% Similarity=0.152 Sum_probs=83.7
Q ss_pred CCEEEEEeC----------CCcEEEEEccCC----eEEEEe--ecCCCceEEEEeCCCCeEEEEcCCCeEEEEEcCCCCC
Q 047325 166 CGLLYTASW----------DRTFKVWRISDS----KCLESV--SAHDDAVNSVVSSSEGLIFTGSADGTVKVWKREQHGK 229 (368)
Q Consensus 166 ~~~l~~~~~----------d~~i~iwd~~~~----~~~~~~--~~~~~~v~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~ 229 (368)
..+|++|.. .|.|.++++... ..+..+ ...+++|++++-- ++.|+++. ++.|.+|++.....
T Consensus 42 ~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~i~~~~~~g~V~ai~~~-~~~lv~~~-g~~l~v~~l~~~~~ 119 (321)
T PF03178_consen 42 KEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKLIHSTEVKGPVTAICSF-NGRLVVAV-GNKLYVYDLDNSKT 119 (321)
T ss_dssp SEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEEEEEEEESS-EEEEEEE-TTEEEEEE-TTEEEEEEEETTSS
T ss_pred cCEEEEEecccccccccccCcEEEEEEEEcccccceEEEEEEEEeecCcceEhhhh-CCEEEEee-cCEEEEEEccCccc
Confidence 457777753 288999999884 122221 2347889999766 44544433 58999999986531
Q ss_pred CcccccceeeccccccEEEEEEcCCCCEEEEecCCCcEEEEeCCC--ccccceeeeccceEEEEEEe--CCCEEEEeeCC
Q 047325 230 GTKHSLAQTLLKQECAVTALVVSSSRSIVYCGSSDGLVNFWEREK--QLSHGGVLKGHKLAVLCLAA--AGKLVFSGSAD 305 (368)
Q Consensus 230 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~--~~~~~~~~~~~~~~~~~~~~--~~~~l~~~~~d 305 (368)
. ...........+.++... +++++.|.....+.++..+. ..............+++..+ +++.++++..+
T Consensus 120 ---l-~~~~~~~~~~~i~sl~~~--~~~I~vgD~~~sv~~~~~~~~~~~l~~va~d~~~~~v~~~~~l~d~~~~i~~D~~ 193 (321)
T PF03178_consen 120 ---L-LKKAFYDSPFYITSLSVF--KNYILVGDAMKSVSLLRYDEENNKLILVARDYQPRWVTAAEFLVDEDTIIVGDKD 193 (321)
T ss_dssp ---E-EEEEEE-BSSSEEEEEEE--TTEEEEEESSSSEEEEEEETTTE-EEEEEEESS-BEEEEEEEE-SSSEEEEEETT
T ss_pred ---c-hhhheecceEEEEEEecc--ccEEEEEEcccCEEEEEEEccCCEEEEEEecCCCccEEEEEEecCCcEEEEEcCC
Confidence 1 111112223356666554 56999999888888875443 21111112223344555443 66799999999
Q ss_pred CeEEEEecC
Q 047325 306 KTICVWRRD 314 (368)
Q Consensus 306 g~i~iw~~~ 314 (368)
|.+.++..+
T Consensus 194 gnl~~l~~~ 202 (321)
T PF03178_consen 194 GNLFVLRYN 202 (321)
T ss_dssp SEEEEEEE-
T ss_pred CeEEEEEEC
Confidence 999999876
No 346
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.95 E-value=0.01 Score=51.45 Aligned_cols=49 Identities=16% Similarity=0.310 Sum_probs=37.6
Q ss_pred cEEEEcCCc-ceecccCCCCCeeEEEEe-CCEEEEEeCCCeEEEEeecCCC
Q 047325 65 NIRVWKNLK-EFCGFKASSGLVKAIVIS-GEKIFTGHQDGKIRVWKISPKN 113 (368)
Q Consensus 65 ~i~iw~~~~-~~~~~~~~~~~v~~~~~~-~~~l~s~~~dg~i~vw~~~~~~ 113 (368)
.|+||+... .+....-..+.+.++.|. .+.|+.-..||.++++|+....
T Consensus 62 ~I~iys~sG~ll~~i~w~~~~iv~~~wt~~e~LvvV~~dG~v~vy~~~G~~ 112 (410)
T PF04841_consen 62 SIQIYSSSGKLLSSIPWDSGRIVGMGWTDDEELVVVQSDGTVRVYDLFGEF 112 (410)
T ss_pred EEEEECCCCCEeEEEEECCCCEEEEEECCCCeEEEEEcCCEEEEEeCCCce
Confidence 499998764 344444344899999998 7789999999999999987443
No 347
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=97.94 E-value=0.0012 Score=59.61 Aligned_cols=71 Identities=14% Similarity=0.215 Sum_probs=62.6
Q ss_pred CEeEEEEcCCCCEEEEEeCCCcEEEEEccCCeEEEEeecCCCceEEEEeCCCC-eEEEEcCCCeEEEEEcCC
Q 047325 156 AVSCMSLDQDCGLLYTASWDRTFKVWRISDSKCLESVSAHDDAVNSVVSSSEG-LIFTGSADGTVKVWKREQ 226 (368)
Q Consensus 156 ~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~dg~i~i~d~~~ 226 (368)
.+++++|+|..-.|+.|=.-|.+.+|...+.+.-.....|..+|..+.|+++| .++++..-|.+.+|....
T Consensus 61 hatSLCWHpe~~vLa~gwe~g~~~v~~~~~~e~htv~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d~ 132 (1416)
T KOG3617|consen 61 HATSLCWHPEEFVLAQGWEMGVSDVQKTNTTETHTVVETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYDV 132 (1416)
T ss_pred ehhhhccChHHHHHhhccccceeEEEecCCceeeeeccCCCCCceeEEecCCCCeEEEcCCCceeEEEEeee
Confidence 35679999988888888888999999988877777777899999999999999 999999999999998764
No 348
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=97.91 E-value=0.00044 Score=63.36 Aligned_cols=137 Identities=15% Similarity=0.215 Sum_probs=92.0
Q ss_pred eCCCcEEEEEccCCeEEEEeecCCCc-eEEEEeCC------CCeEEEEcCCCeEEEEEcCCCCCCcccccceeecccccc
Q 047325 173 SWDRTFKVWRISDSKCLESVSAHDDA-VNSVVSSS------EGLIFTGSADGTVKVWKREQHGKGTKHSLAQTLLKQECA 245 (368)
Q Consensus 173 ~~d~~i~iwd~~~~~~~~~~~~~~~~-v~~~~~~~------~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~ 245 (368)
.....|+-.|++.|+.+..+..+... |..++-.. ....+.|-.+..+..||.|..+....... .........
T Consensus 501 ~~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~-~k~Y~~~~~ 579 (794)
T PF08553_consen 501 NNPNKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQ-SKQYSSKNN 579 (794)
T ss_pred CCCCceEEEecCCCcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCceeecc-ccccccCCC
Confidence 34578999999999999999987654 66664321 12667888899999999997542000000 111123445
Q ss_pred EEEEEEcCCCCEEEEecCCCcEEEEeCCCccccceeeeccceEE--EEEEeCCCEEEEeeCCCeEEEEec
Q 047325 246 VTALVVSSSRSIVYCGSSDGLVNFWEREKQLSHGGVLKGHKLAV--LCLAAAGKLVFSGSADKTICVWRR 313 (368)
Q Consensus 246 i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~~~dg~i~iw~~ 313 (368)
..|++-..+| +||+|+.+|.|++||-- +......+.+-..+| ++++.||++|++.+ +..|.+++.
T Consensus 580 Fs~~aTt~~G-~iavgs~~G~IRLyd~~-g~~AKT~lp~lG~pI~~iDvt~DGkwilaTc-~tyLlLi~t 646 (794)
T PF08553_consen 580 FSCFATTEDG-YIAVGSNKGDIRLYDRL-GKRAKTALPGLGDPIIGIDVTADGKWILATC-KTYLLLIDT 646 (794)
T ss_pred ceEEEecCCc-eEEEEeCCCcEEeeccc-chhhhhcCCCCCCCeeEEEecCCCcEEEEee-cceEEEEEE
Confidence 7777777665 78999999999999943 334444555545555 55667999988766 456777764
No 349
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.87 E-value=0.00011 Score=63.53 Aligned_cols=95 Identities=18% Similarity=0.276 Sum_probs=76.3
Q ss_pred cCCCEeEEEEcCCCCEEEEEeCCCcEEEEEccCCeEEEEeecCCCceE-EEEeCCCC-eEEEEcCCCeEEEEEcCCCCCC
Q 047325 153 HSDAVSCMSLDQDCGLLYTASWDRTFKVWRISDSKCLESVSAHDDAVN-SVVSSSEG-LIFTGSADGTVKVWKREQHGKG 230 (368)
Q Consensus 153 ~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~-~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~ 230 (368)
-...|.-+.|+|.-.++|.+..+|.|.+..+. .+.+.+++-|...++ +++|.||| .|++|-.||+|++.|...+..
T Consensus 19 l~~~i~~~ewnP~~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~- 96 (665)
T KOG4640|consen 19 LPINIKRIEWNPKMDLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGR- 96 (665)
T ss_pred cccceEEEEEcCccchhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCCc-
Confidence 34567889999999999999999999999987 788888887777777 99999999 999999999999999987654
Q ss_pred cccccceeeccccccEEEEEEcC
Q 047325 231 TKHSLAQTLLKQECAVTALVVSS 253 (368)
Q Consensus 231 ~~~~~~~~~~~~~~~i~~~~~~~ 253 (368)
...........|.++-|.+
T Consensus 97 ----l~~~~~s~e~~is~~~w~~ 115 (665)
T KOG4640|consen 97 ----LVSFLFSVETDISKGIWDR 115 (665)
T ss_pred ----eeccccccccchheeeccc
Confidence 1221223445677777763
No 350
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=97.87 E-value=5.3e-05 Score=57.15 Aligned_cols=125 Identities=18% Similarity=0.145 Sum_probs=73.3
Q ss_pred eEEEEcCCCeEEEEEcCCCCCCcccccceeeccccccEEEEEEcCCCCEEEEecCCCcEEEEeCCCccccceeeeccceE
Q 047325 209 LIFTGSADGTVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSSSRSIVYCGSSDGLVNFWEREKQLSHGGVLKGHKLA 288 (368)
Q Consensus 209 ~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~ 288 (368)
.+...+.||.|+-++++.... ..+....+... .....-+..+++|+.+|.|++|.....-........-...
T Consensus 32 ~l~~~sa~~~v~~~~~~k~k~-----s~rse~~~~e~---~~v~~~~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~ 103 (238)
T KOG2444|consen 32 LLRATSADGLVRERKVRKHKE-----SCRSERFIDEG---QRVVTASAKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEES 103 (238)
T ss_pred hhccccCCcccccchhhhhhh-----hhhhhhhhhcc---eeecccCceEEeecccceEEEecCCccchHHHhhhccccc
Confidence 455567788888888874321 11111112221 1111235679999999999999876211111122222233
Q ss_pred EEEEEe---CCCEEEEeeCCCeEEEEecCCCceeeeEeeeccc-cCeeEEEEecCCeee
Q 047325 289 VLCLAA---AGKLVFSGSADKTICVWRRDGAIHTCLSVLTGHT-GPVKCLAVEEDRDSS 343 (368)
Q Consensus 289 ~~~~~~---~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~-~~v~~l~~~~~~~~~ 343 (368)
+.+.-| ++.+.+++..||.|+.|++... +.+.....|. .++..+..+..++++
T Consensus 104 i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~--k~~g~~g~h~~~~~e~~ivv~sd~~i 160 (238)
T KOG2444|consen 104 IDLGIPNGRDSSLGCVGAQDGRIRACNIKPN--KVLGYVGQHNFESGEELIVVGSDEFL 160 (238)
T ss_pred ceeccccccccceeEEeccCCceeeeccccC--ceeeeeccccCCCcceeEEecCCceE
Confidence 444444 3558899999999999988765 5555555666 566666666666643
No 351
>PHA02713 hypothetical protein; Provisional
Probab=97.78 E-value=0.0041 Score=56.26 Aligned_cols=150 Identities=8% Similarity=0.029 Sum_probs=78.0
Q ss_pred CCCEEEEEeCCC-----cEEEEEccCCeE--EEEeecCCCceEEEEeCCCC-eEEEEcCC--------------------
Q 047325 165 DCGLLYTASWDR-----TFKVWRISDSKC--LESVSAHDDAVNSVVSSSEG-LIFTGSAD-------------------- 216 (368)
Q Consensus 165 ~~~~l~~~~~d~-----~i~iwd~~~~~~--~~~~~~~~~~v~~~~~~~~~-~l~~~~~d-------------------- 216 (368)
+++..+.||.++ .+..||..+.+= +..+.........+. . ++ ..+.|+.+
T Consensus 351 ~g~IYviGG~~~~~~~~sve~Ydp~~~~W~~~~~mp~~r~~~~~~~-~-~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~ 428 (557)
T PHA02713 351 DDTIYAIGGQNGTNVERTIECYTMGDDKWKMLPDMPIALSSYGMCV-L-DQYIYIIGGRTEHIDYTSVHHMNSIDMEEDT 428 (557)
T ss_pred CCEEEEECCcCCCCCCceEEEEECCCCeEEECCCCCcccccccEEE-E-CCEEEEEeCCCcccccccccccccccccccc
Confidence 466777777654 478899876532 222221111111222 2 45 55666654
Q ss_pred ---CeEEEEEcCCCCCCcccccceeeccccccEEEEEEcCCCCEEEEecCC------CcEEEEeCCC-c-cccceeeecc
Q 047325 217 ---GTVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSSSRSIVYCGSSD------GLVNFWEREK-Q-LSHGGVLKGH 285 (368)
Q Consensus 217 ---g~i~i~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d------g~i~i~d~~~-~-~~~~~~~~~~ 285 (368)
..+..||.++..= .....+....... +++ .-++++.+.|+.+ ..+..||.++ . ......+...
T Consensus 429 ~~~~~ve~YDP~td~W----~~v~~m~~~r~~~-~~~-~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~ 502 (557)
T PHA02713 429 HSSNKVIRYDTVNNIW----ETLPNFWTGTIRP-GVV-SHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESR 502 (557)
T ss_pred cccceEEEECCCCCeE----eecCCCCcccccC-cEE-EECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCcc
Confidence 2477788765421 1111111111111 122 2246666667654 2467899886 3 2222223323
Q ss_pred ceEEEEEEeCCCEEEEeeCCC--eEEEEecCCCceeeeE
Q 047325 286 KLAVLCLAAAGKLVFSGSADK--TICVWRRDGAIHTCLS 322 (368)
Q Consensus 286 ~~~~~~~~~~~~~l~~~~~dg--~i~iw~~~~~~~~~~~ 322 (368)
....-....++++.++|+.|| .+..||..+.++..+.
T Consensus 503 r~~~~~~~~~~~iyv~Gg~~~~~~~e~yd~~~~~W~~~~ 541 (557)
T PHA02713 503 LSALHTILHDNTIMMLHCYESYMLQDTFNVYTYEWNHIC 541 (557)
T ss_pred cccceeEEECCEEEEEeeecceeehhhcCcccccccchh
Confidence 333344456899999999888 7888888777655443
No 352
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=97.77 E-value=0.013 Score=48.09 Aligned_cols=200 Identities=15% Similarity=0.145 Sum_probs=113.2
Q ss_pred EEEEcCCCCEEEEEe--CCCcEEEEEccCCeEEEEeecCCCceEEEEeCCCCeEEEEcCCCeEEEEEcCCCCCCcccccc
Q 047325 159 CMSLDQDCGLLYTAS--WDRTFKVWRISDSKCLESVSAHDDAVNSVVSSSEGLIFTGSADGTVKVWKREQHGKGTKHSLA 236 (368)
Q Consensus 159 ~~~~~~~~~~l~~~~--~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~ 236 (368)
.++++.+++++++.. --..|.+.|+..++.+.++.-.. +..+--.++..+.+-+.||.+.-..+...++.. ....
T Consensus 99 ~~~ls~dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei~~PG--C~~iyP~~~~~F~~lC~DGsl~~v~Ld~~Gk~~-~~~t 175 (342)
T PF06433_consen 99 MFALSADGKFLYVQNFTPATSVTVVDLAAKKVVGEIDTPG--CWLIYPSGNRGFSMLCGDGSLLTVTLDADGKEA-QKST 175 (342)
T ss_dssp GEEE-TTSSEEEEEEESSSEEEEEEETTTTEEEEEEEGTS--EEEEEEEETTEEEEEETTSCEEEEEETSTSSEE-EEEE
T ss_pred ceEEccCCcEEEEEccCCCCeEEEEECCCCceeeeecCCC--EEEEEecCCCceEEEecCCceEEEEECCCCCEe-Eeec
Confidence 467888999887764 34579999999999998887432 223322233367788889999999998665522 1111
Q ss_pred eeeccccccE-EEEEEcCCCCEEEEecCCCcEEEEeCCCccccc-e------------eeeccceEEEEEEeCCCEEEEe
Q 047325 237 QTLLKQECAV-TALVVSSSRSIVYCGSSDGLVNFWEREKQLSHG-G------------VLKGHKLAVLCLAAAGKLVFSG 302 (368)
Q Consensus 237 ~~~~~~~~~i-~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~-~------------~~~~~~~~~~~~~~~~~~l~~~ 302 (368)
..+.....++ ..-++...+..++--+.+|.|+-.|+....... . ....-.-...++++..+.|++-
T Consensus 176 ~~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rlyvL 255 (342)
T PF06433_consen 176 KVFDPDDDPLFEHPAYSRDGGRLYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGRLYVL 255 (342)
T ss_dssp EESSTTTS-B-S--EEETTTTEEEEEBTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTEEEEE
T ss_pred cccCCCCcccccccceECCCCeEEEEecCCEEEEEeccCCcccccCcccccCccccccCcCCcceeeeeeccccCeEEEE
Confidence 2222222222 233344455555556788888888876432110 0 0111122345666555444442
Q ss_pred e--------CCCeEEEEecCCCceeeeEeeeccccCeeEEEEecCCe-ee-e-cC-CcceEEEEEeeCCccc
Q 047325 303 S--------ADKTICVWRRDGAIHTCLSVLTGHTGPVKCLAVEEDRD-SS-S-ST-SSCAQRWIVYSGSLDK 362 (368)
Q Consensus 303 ~--------~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~-~~-~-~~-~~~~~~w~l~sg~~D~ 362 (368)
- .|+.-.||-++..+.+.+.++.- ..++.+|+.+.+.+ .| + +. ++...++...+|..-+
T Consensus 256 Mh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l-~~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk~~~ 326 (342)
T PF06433_consen 256 MHQGGEGSHKDPGTEVWVYDLKTHKRVARIPL-EHPIDSIAVSQDDKPLLYALSAGDGTLDVYDAATGKLVR 326 (342)
T ss_dssp EEE--TT-TTS-EEEEEEEETTTTEEEEEEEE-EEEESEEEEESSSS-EEEEEETTTTEEEEEETTT--EEE
T ss_pred ecCCCCCCccCCceEEEEEECCCCeEEEEEeC-CCccceEEEccCCCcEEEEEcCCCCeEEEEeCcCCcEEe
Confidence 2 25556677766666677877763 35688999998876 33 2 22 3456666666664433
No 353
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=97.77 E-value=0.017 Score=49.68 Aligned_cols=179 Identities=14% Similarity=0.180 Sum_probs=114.3
Q ss_pred eEEEEcCCCCEEEEE-eCCCcEEEEEccCCeEEEEeecCCCceEEEEeCCCC-eEEEEcC---CCeEEEEEcCCCCCCcc
Q 047325 158 SCMSLDQDCGLLYTA-SWDRTFKVWRISDSKCLESVSAHDDAVNSVVSSSEG-LIFTGSA---DGTVKVWKREQHGKGTK 232 (368)
Q Consensus 158 ~~~~~~~~~~~l~~~-~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~---dg~i~i~d~~~~~~~~~ 232 (368)
..++.++.++.++.. ..++.|.+.|..+.+......... ....+++.+++ .+.++.. ++.+.+.|..+..
T Consensus 77 ~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~~~vG~-~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~---- 151 (381)
T COG3391 77 AGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGSIPVGL-GPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNK---- 151 (381)
T ss_pred cceeeCCCCCeEEEecCCCCeEEEEcCcccceeeEeeecc-CCceEEECCCCCEEEEEecccCCceEEEEeCCCCe----
Confidence 467788877755444 445899999988777776665433 55788899988 5555444 6888888877653
Q ss_pred cccceeeccccccEEEEEEcCCCCEEEEec-CCCcEEEEeCCCccccc-----eeeeccceEEEEEEeCCCEEEEeeCC-
Q 047325 233 HSLAQTLLKQECAVTALVVSSSRSIVYCGS-SDGLVNFWEREKQLSHG-----GVLKGHKLAVLCLAAAGKLVFSGSAD- 305 (368)
Q Consensus 233 ~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~-----~~~~~~~~~~~~~~~~~~~l~~~~~d- 305 (368)
..........+ ..+++.|+++.++... .++.|.+.|........ ............+.+++.++.+....
T Consensus 152 --~~~~~~vG~~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~ 228 (381)
T COG3391 152 --VTATIPVGNTP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVRGSVGSLVGVGTGPAGIAVDPDGNRVYVANDGS 228 (381)
T ss_pred --EEEEEecCCCc-ceEEECCCCCeEEEEecCCCeEEEEeCCCcceeccccccccccCCCCceEEECCCCCEEEEEeccC
Confidence 22222222233 8899999999666554 78899999977543331 01122223447788898866665443
Q ss_pred --CeEEEEecCCCceeeeEe--eeccccCeeEEEEecCCeeeecCC
Q 047325 306 --KTICVWRRDGAIHTCLSV--LTGHTGPVKCLAVEEDRDSSSSTS 347 (368)
Q Consensus 306 --g~i~iw~~~~~~~~~~~~--~~~h~~~v~~l~~~~~~~~~~~~~ 347 (368)
+.+...|..+. ..... ..+-. ....+.++|+|..+-...
T Consensus 229 ~~~~v~~id~~~~--~v~~~~~~~~~~-~~~~v~~~p~g~~~yv~~ 271 (381)
T COG3391 229 GSNNVLKIDTATG--NVTATDLPVGSG-APRGVAVDPAGKAAYVAN 271 (381)
T ss_pred CCceEEEEeCCCc--eEEEeccccccC-CCCceeECCCCCEEEEEe
Confidence 57888877665 22222 11122 456788999998665553
No 354
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=97.74 E-value=0.017 Score=47.36 Aligned_cols=245 Identities=12% Similarity=0.140 Sum_probs=124.2
Q ss_pred EEecCCEEEEccCCCcEEEEcCC-cceecccCCCCCeeEEEEeC--CEEEEEeCCCeEEEEeecCCCccccccCCccccc
Q 047325 50 LAASKDLLYTGSDSKNIRVWKNL-KEFCGFKASSGLVKAIVISG--EKIFTGHQDGKIRVWKISPKNQSVHKRAGTLPTL 126 (368)
Q Consensus 50 ~~~~~~~l~s~~~dg~i~iw~~~-~~~~~~~~~~~~v~~~~~~~--~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~ 126 (368)
.+..++.|+.|..+| +.+++.. ........+...|..+.... +.|++-+ |+.+.++++..-...........+..
T Consensus 3 ~~~~~~~L~vGt~~G-l~~~~~~~~~~~~~i~~~~~I~ql~vl~~~~~llvLs-d~~l~~~~L~~l~~~~~~~~~~~~~~ 80 (275)
T PF00780_consen 3 ADSWGDRLLVGTEDG-LYVYDLSDPSKPTRILKLSSITQLSVLPELNLLLVLS-DGQLYVYDLDSLEPVSTSAPLAFPKS 80 (275)
T ss_pred cccCCCEEEEEECCC-EEEEEecCCccceeEeecceEEEEEEecccCEEEEEc-CCccEEEEchhhcccccccccccccc
Confidence 344577899999999 8888883 11111222333488888763 4444443 69999999987654332210000000
Q ss_pred eeeeeccCCCCceeEecccceeeeeecCCCEeEEE--EcCC-CCEEEEEeCCCcEEEEEccCC-----eEEEEeecCCCc
Q 047325 127 KDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMS--LDQD-CGLLYTASWDRTFKVWRISDS-----KCLESVSAHDDA 198 (368)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~--~~~~-~~~l~~~~~d~~i~iwd~~~~-----~~~~~~~~~~~~ 198 (368)
.. ...-......+...+ -... ...|+++. ...|.+|..... +..+.+.- ...
T Consensus 81 ~~------------------~~~~~~~~~~v~~f~~~~~~~~~~~L~va~-kk~i~i~~~~~~~~~f~~~~ke~~l-p~~ 140 (275)
T PF00780_consen 81 RS------------------LPTKLPETKGVSFFAVNGGHEGSRRLCVAV-KKKILIYEWNDPRNSFSKLLKEISL-PDP 140 (275)
T ss_pred cc------------------ccccccccCCeeEEeeccccccceEEEEEE-CCEEEEEEEECCcccccceeEEEEc-CCC
Confidence 00 000000223344444 1123 33444444 468998887653 34555553 467
Q ss_pred eEEEEeCCCCeEEEEcCCCeEEEEEcCCCCCCcccccce------eeccccccEEEEEEcCCCCEEEEecCCCcEEEEeC
Q 047325 199 VNSVVSSSEGLIFTGSADGTVKVWKREQHGKGTKHSLAQ------TLLKQECAVTALVVSSSRSIVYCGSSDGLVNFWER 272 (368)
Q Consensus 199 v~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~------~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~ 272 (368)
+.+++|.++ .++.|.. ....+.|+.+.....-..... .......++..+... ++.+|++- |..-.+.|.
T Consensus 141 ~~~i~~~~~-~i~v~~~-~~f~~idl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~e~Ll~~--~~~g~fv~~ 215 (275)
T PF00780_consen 141 PSSIAFLGN-KICVGTS-KGFYLIDLNTGSPSELLDPSDSSSSFKSRNSSSKPLGIFQLS-DNEFLLCY--DNIGVFVNK 215 (275)
T ss_pred cEEEEEeCC-EEEEEeC-CceEEEecCCCCceEEeCccCCcchhhhcccCCCceEEEEeC-CceEEEEe--cceEEEEcC
Confidence 788988844 5555554 457788888543210000000 000112233334433 45566543 333344444
Q ss_pred CCccccceeeeccceEEEEEEeCCCEEEEeeCCCeEEEEecCCCceeeeEeee
Q 047325 273 EKQLSHGGVLKGHKLAVLCLAAAGKLVFSGSADKTICVWRRDGAIHTCLSVLT 325 (368)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~ 325 (368)
.........+.- ......+.....+|++-+.+ .|.||++.++ +.++.+.
T Consensus 216 ~G~~~r~~~i~W-~~~p~~~~~~~pyli~~~~~-~iEV~~~~~~--~lvQ~i~ 264 (275)
T PF00780_consen 216 NGEPSRKSTIQW-SSAPQSVAYSSPYLIAFSSN-SIEVRSLETG--ELVQTIP 264 (275)
T ss_pred CCCcCcccEEEc-CCchhEEEEECCEEEEECCC-EEEEEECcCC--cEEEEEE
Confidence 432111122221 12334555667788876664 5999999887 5666664
No 355
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=97.73 E-value=0.018 Score=47.42 Aligned_cols=172 Identities=13% Similarity=0.093 Sum_probs=98.6
Q ss_pred CCEeEEEEcCCCCEEEEEeCCCcEEEEEccCCeEEEEeec-----CCCceEEEEeCCCCeEEEEcCC------------C
Q 047325 155 DAVSCMSLDQDCGLLYTASWDRTFKVWRISDSKCLESVSA-----HDDAVNSVVSSSEGLIFTGSAD------------G 217 (368)
Q Consensus 155 ~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~-----~~~~v~~~~~~~~~~l~~~~~d------------g 217 (368)
+.+.++.....+..|+++.. -+.+++..++..+..+.. .....+.+...|+|.+..+... |
T Consensus 66 ~~~~~~~~~d~~g~Lv~~~~--g~~~~~~~~~~~~t~~~~~~~~~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G 143 (307)
T COG3386 66 GGFSSGALIDAGGRLIACEH--GVRLLDPDTGGKITLLAEPEDGLPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTG 143 (307)
T ss_pred CCcccceeecCCCeEEEEcc--ccEEEeccCCceeEEeccccCCCCcCCCCceeEcCCCCEEEeCCCccccCccccCCcc
Confidence 34445554444555665543 367777766655333321 1245567788899966665554 2
Q ss_pred eEEEEEcCCCCCCcccccceeeccccccEEEEEEcCCCCEEEEecCC-CcEEEEeCCC--ccccc---eeee-ccce--E
Q 047325 218 TVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSSSRSIVYCGSSD-GLVNFWEREK--QLSHG---GVLK-GHKL--A 288 (368)
Q Consensus 218 ~i~i~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d-g~i~i~d~~~--~~~~~---~~~~-~~~~--~ 288 (368)
.|+.+|.. + ........+-..-+.++|+||++.|+.+... +.|+-|++.. ...-. .... .... -
T Consensus 144 ~lyr~~p~-g------~~~~l~~~~~~~~NGla~SpDg~tly~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PD 216 (307)
T COG3386 144 SLYRVDPD-G------GVVRLLDDDLTIPNGLAFSPDGKTLYVADTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPD 216 (307)
T ss_pred eEEEEcCC-C------CEEEeecCcEEecCceEECCCCCEEEEEeCCCCeEEEEecCcccCccCCcceEEEccCCCCCCC
Confidence 34444431 1 1233334445566889999999877776554 7788887762 11110 0111 1111 1
Q ss_pred EEEEEeCCCEEEEeeCCC-eEEEEecCCCceeeeEeeeccccCeeEEEEec
Q 047325 289 VLCLAAAGKLVFSGSADK-TICVWRRDGAIHTCLSVLTGHTGPVKCLAVEE 338 (368)
Q Consensus 289 ~~~~~~~~~~l~~~~~dg-~i~iw~~~~~~~~~~~~~~~h~~~v~~l~~~~ 338 (368)
-.++.-+|.+-+++-.+| .|.+|+.+ + +.+..+.-....+++++|-.
T Consensus 217 G~~vDadG~lw~~a~~~g~~v~~~~pd-G--~l~~~i~lP~~~~t~~~FgG 264 (307)
T COG3386 217 GMAVDADGNLWVAAVWGGGRVVRFNPD-G--KLLGEIKLPVKRPTNPAFGG 264 (307)
T ss_pred ceEEeCCCCEEEecccCCceEEEECCC-C--cEEEEEECCCCCCccceEeC
Confidence 155666777776555554 89999776 3 56666666667888999975
No 356
>PRK02888 nitrous-oxide reductase; Validated
Probab=97.72 E-value=0.0062 Score=54.18 Aligned_cols=107 Identities=13% Similarity=0.025 Sum_probs=71.6
Q ss_pred CCCCEEEEEeCCCcEEEEEccC-----CeEEEEeecCCCceEEEEeCCCC--eEEEEcCCCeEEEEEcCCCCCCc-----
Q 047325 164 QDCGLLYTASWDRTFKVWRISD-----SKCLESVSAHDDAVNSVVSSSEG--LIFTGSADGTVKVWKREQHGKGT----- 231 (368)
Q Consensus 164 ~~~~~l~~~~~d~~i~iwd~~~-----~~~~~~~~~~~~~v~~~~~~~~~--~l~~~~~dg~i~i~d~~~~~~~~----- 231 (368)
++|++... .++.|.+.|..+ .+.+..+.. ......+.++||| .++++..+.++.+.|+.......
T Consensus 286 kdGK~~~V--~gn~V~VID~~t~~~~~~~v~~yIPV-GKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~ 362 (635)
T PRK02888 286 KAGKFKTI--GGSKVPVVDGRKAANAGSALTRYVPV-PKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIK 362 (635)
T ss_pred hCCCEEEE--CCCEEEEEECCccccCCcceEEEEEC-CCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCC
Confidence 35665555 256799999988 355555553 4456889999999 45555669999999998643200
Q ss_pred -ccccceeeccccccEEEEEEcCCCCEEEEecCCCcEEEEeCCC
Q 047325 232 -KHSLAQTLLKQECAVTALVVSSSRSIVYCGSSDGLVNFWEREK 274 (368)
Q Consensus 232 -~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~ 274 (368)
+........- .......+|.++|+...+-.-|..|..|++.+
T Consensus 363 ~~~~vvaevev-GlGPLHTaFDg~G~aytslf~dsqv~kwn~~~ 405 (635)
T PRK02888 363 PRDAVVAEPEL-GLGPLHTAFDGRGNAYTTLFLDSQIVKWNIEA 405 (635)
T ss_pred ccceEEEeecc-CCCcceEEECCCCCEEEeEeecceeEEEehHH
Confidence 0011111111 23345678899999888888999999999875
No 357
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.72 E-value=0.00095 Score=56.87 Aligned_cols=138 Identities=17% Similarity=0.218 Sum_probs=92.7
Q ss_pred EEEEEeCCCcEEEEEccCCeEEEEeecCCCceEEEEeCCCC--------eEEEEcCCCeEEEEEcCCCCCCcccccceee
Q 047325 168 LLYTASWDRTFKVWRISDSKCLESVSAHDDAVNSVVSSSEG--------LIFTGSADGTVKVWKREQHGKGTKHSLAQTL 239 (368)
Q Consensus 168 ~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~--------~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~ 239 (368)
++.++.....|+-.|++.|+.+...+.+.. |+-+.+.|+. .-+.|-.|..|.-||.|..+.. .+...
T Consensus 348 il~~~~~~~~l~klDIE~GKIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~----kl~~~ 422 (644)
T KOG2395|consen 348 ILMDGGEQDKLYKLDIERGKIVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKN----KLAVV 422 (644)
T ss_pred EeeCCCCcCcceeeecccceeeeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCcc----eeeee
Confidence 344555566789999999999999987766 6667777765 2356777899999999865431 11112
Q ss_pred ccc----cccEEEEEEcCCCCEEEEecCCCcEEEEeCCCccccceeeeccceEE--EEEEeCCCEEEEeeCCCeEEEEec
Q 047325 240 LKQ----ECAVTALVVSSSRSIVYCGSSDGLVNFWEREKQLSHGGVLKGHKLAV--LCLAAAGKLVFSGSADKTICVWRR 313 (368)
Q Consensus 240 ~~~----~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~~~dg~i~iw~~ 313 (368)
..+ .....|++-..+| ++++|+.+|.|++||. .+......+.+-..+| +.++.+|++|++.+ +..+.+-++
T Consensus 423 q~kqy~~k~nFsc~aTT~sG-~IvvgS~~GdIRLYdr-i~~~AKTAlPgLG~~I~hVdvtadGKwil~Tc-~tyLlLi~t 499 (644)
T KOG2395|consen 423 QSKQYSTKNNFSCFATTESG-YIVVGSLKGDIRLYDR-IGRRAKTALPGLGDAIKHVDVTADGKWILATC-KTYLLLIDT 499 (644)
T ss_pred eccccccccccceeeecCCc-eEEEeecCCcEEeehh-hhhhhhhcccccCCceeeEEeeccCcEEEEec-ccEEEEEEE
Confidence 222 2334555555454 7899999999999996 4444445555555555 55667899887655 556666654
No 358
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=97.67 E-value=0.00023 Score=37.80 Aligned_cols=38 Identities=34% Similarity=0.661 Sum_probs=33.1
Q ss_pred CeEEEEeecCCCceEEEEeCCCC-eEEEEcCCCeEEEEE
Q 047325 186 SKCLESVSAHDDAVNSVVSSSEG-LIFTGSADGTVKVWK 223 (368)
Q Consensus 186 ~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~dg~i~i~d 223 (368)
++++..+..|...|.++.|.+++ .+++++.|+.+++|+
T Consensus 2 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 2 GELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred cEEEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 45667777888999999999987 999999999999996
No 359
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.64 E-value=0.00036 Score=60.52 Aligned_cols=93 Identities=15% Similarity=0.067 Sum_probs=69.0
Q ss_pred CCceEEEEeCCCC-eEEEEcCCCeEEEEEcCCCCCCcccccceeeccccccEE-EEEEcCCCCEEEEecCCCcEEEEeCC
Q 047325 196 DDAVNSVVSSSEG-LIFTGSADGTVKVWKREQHGKGTKHSLAQTLLKQECAVT-ALVVSSSRSIVYCGSSDGLVNFWERE 273 (368)
Q Consensus 196 ~~~v~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~i~-~~~~~~~~~~l~~~~~dg~i~i~d~~ 273 (368)
...+..+.|+|.- .+|.+..+|.|.+..++-. .+-.+.-+...++ +++|.|||+.|+.|-.||+|++.|.+
T Consensus 20 ~~~i~~~ewnP~~dLiA~~t~~gelli~R~n~q-------Rlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve 92 (665)
T KOG4640|consen 20 PINIKRIEWNPKMDLIATRTEKGELLIHRLNWQ-------RLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVE 92 (665)
T ss_pred ccceEEEEEcCccchhheeccCCcEEEEEeccc-------eeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEcc
Confidence 3467888999988 9999999999999888732 2344443444455 99999999999999999999999999
Q ss_pred CccccceeeeccceEEEEEEeC
Q 047325 274 KQLSHGGVLKGHKLAVLCLAAA 295 (368)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~ 295 (368)
++..+......-...+.+..++
T Consensus 93 ~~~~l~~~~~s~e~~is~~~w~ 114 (665)
T KOG4640|consen 93 KGGRLVSFLFSVETDISKGIWD 114 (665)
T ss_pred CCCceeccccccccchheeecc
Confidence 8876655333333444444443
No 360
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=97.62 E-value=0.00021 Score=37.91 Aligned_cols=34 Identities=29% Similarity=0.425 Sum_probs=30.2
Q ss_pred eeeecCCCEeEEEEcCCCCEEEEEeCCCcEEEEE
Q 047325 149 LWIRHSDAVSCMSLDQDCGLLYTASWDRTFKVWR 182 (368)
Q Consensus 149 ~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd 182 (368)
.+..|...|.++.|.+++..+++++.|+.+++||
T Consensus 7 ~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 7 TLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred EEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 3445888999999999999999999999999996
No 361
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.61 E-value=0.0057 Score=56.86 Aligned_cols=111 Identities=23% Similarity=0.396 Sum_probs=81.9
Q ss_pred CCCeeEEEEeCCEEEEEeCCCeEEEEeecCCCccccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEE
Q 047325 82 SGLVKAIVISGEKIFTGHQDGKIRVWKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMS 161 (368)
Q Consensus 82 ~~~v~~~~~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 161 (368)
...+.+.+.-+..++.|+..|.+-..|+...-....... .-..+|++++
T Consensus 89 ~~~v~s~a~~~~~ivi~Ts~ghvl~~d~~~nL~~~~~ne-------------------------------~v~~~Vtsva 137 (1206)
T KOG2079|consen 89 AAGVISSAIVVVPIVIGTSHGHVLLSDMTGNLGPLHQNE-------------------------------RVQGPVTSVA 137 (1206)
T ss_pred CcceeeeeeeeeeEEEEcCchhhhhhhhhcccchhhcCC-------------------------------ccCCcceeeE
Confidence 444555566678899999999999888876422111110 0457899999
Q ss_pred EcCCCCEEEEEeCCCcEEEEEccCCeEEEEeecCCCceEEEE---eCCCC-eEEEEcCCCeEEEEEcC
Q 047325 162 LDQDCGLLYTASWDRTFKVWRISDSKCLESVSAHDDAVNSVV---SSSEG-LIFTGSADGTVKVWKRE 225 (368)
Q Consensus 162 ~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~---~~~~~-~l~~~~~dg~i~i~d~~ 225 (368)
|+.+|..++.|-.+|.|.+||+..++.++.+..+..+...+- +..++ .++++...|. +|.+.
T Consensus 138 fn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~~ap~t~vi~v~~t~~nS~llt~D~~Gs--f~~lv 203 (1206)
T KOG2079|consen 138 FNQDGSLLLAGLGDGHVTVWDMHRAKILKVITEHGAPVTGVIFVGRTSQNSKLLTSDTGGS--FWKLV 203 (1206)
T ss_pred ecCCCceeccccCCCcEEEEEccCCcceeeeeecCCccceEEEEEEeCCCcEEEEccCCCc--eEEEE
Confidence 999999999999999999999999999998887776655553 33444 7888888887 55543
No 362
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=97.60 E-value=0.033 Score=50.54 Aligned_cols=228 Identities=16% Similarity=0.212 Sum_probs=116.4
Q ss_pred CCEEEEccCCC------cEEEEcCCcce----ecccCCCCCeeEEEEe-CCEEEEEeCC-C-----eEEEEeecCCCccc
Q 047325 54 KDLLYTGSDSK------NIRVWKNLKEF----CGFKASSGLVKAIVIS-GEKIFTGHQD-G-----KIRVWKISPKNQSV 116 (368)
Q Consensus 54 ~~~l~s~~~dg------~i~iw~~~~~~----~~~~~~~~~v~~~~~~-~~~l~s~~~d-g-----~i~vw~~~~~~~~~ 116 (368)
+.+++.||.++ .+..+|..+.. ..+..... -.+++.. +...++|+.| | ++..||...++-..
T Consensus 285 ~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m~~~r~-~~~~~~~~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~ 363 (571)
T KOG4441|consen 285 GKLVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPMPSPRC-RVGVAVLNGKLYVVGGYDSGSDRLSSVERYDPRTNQWTP 363 (571)
T ss_pred CeEEEECCCCCCCcccceeEEecCCcCcEeecCCCCcccc-cccEEEECCEEEEEccccCCCcccceEEEecCCCCceec
Confidence 44777787774 57777876542 12222223 3344444 6677788888 2 46677776655111
Q ss_pred cccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcCCCCEEEEEeCCC-----cEEEEEccCCeEEEE
Q 047325 117 HKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCGLLYTASWDR-----TFKVWRISDSKCLES 191 (368)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~-----~i~iwd~~~~~~~~~ 191 (368)
....... .+...+..+ +|...++||.|| ++-.||..+.+-...
T Consensus 364 ---~a~M~~~-------------------------R~~~~v~~l----~g~iYavGG~dg~~~l~svE~YDp~~~~W~~v 411 (571)
T KOG4441|consen 364 ---VAPMNTK-------------------------RSDFGVAVL----DGKLYAVGGFDGEKSLNSVECYDPVTNKWTPV 411 (571)
T ss_pred ---cCCccCc-------------------------cccceeEEE----CCEEEEEeccccccccccEEEecCCCCccccc
Confidence 1110000 011112221 577888888886 466777765442111
Q ss_pred eecCCCceEEE-EeCCCC-eEEEEcCC------CeEEEEEcCCCCCCcccccceeeccccccEEEEEEcCCCCEEEEecC
Q 047325 192 VSAHDDAVNSV-VSSSEG-LIFTGSAD------GTVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSSSRSIVYCGSS 263 (368)
Q Consensus 192 ~~~~~~~v~~~-~~~~~~-~l~~~~~d------g~i~i~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~ 263 (368)
-.-.. ..... ...-+| ..++|+.+ .++..||..++.- .................+ ++.+.+.|+.
T Consensus 412 a~m~~-~r~~~gv~~~~g~iYi~GG~~~~~~~l~sve~YDP~t~~W----~~~~~M~~~R~~~g~a~~--~~~iYvvGG~ 484 (571)
T KOG4441|consen 412 APMLT-RRSGHGVAVLGGKLYIIGGGDGSSNCLNSVECYDPETNTW----TLIAPMNTRRSGFGVAVL--NGKIYVVGGF 484 (571)
T ss_pred CCCCc-ceeeeEEEEECCEEEEEcCcCCCccccceEEEEcCCCCce----eecCCcccccccceEEEE--CCEEEEECCc
Confidence 11111 11111 112245 66666644 3577888876532 112222222222222222 5778888887
Q ss_pred CCc-----EEEEeCCCccccce-eeeccceEEEEEEeCCCEEEEeeCCC-----eEEEEecCCCceeee
Q 047325 264 DGL-----VNFWEREKQLSHGG-VLKGHKLAVLCLAAAGKLVFSGSADK-----TICVWRRDGAIHTCL 321 (368)
Q Consensus 264 dg~-----i~i~d~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~dg-----~i~iw~~~~~~~~~~ 321 (368)
|+. |..||.++.+-... ........+-....++.+.++|+.|| +|..||..+.++...
T Consensus 485 ~~~~~~~~VE~ydp~~~~W~~v~~m~~~rs~~g~~~~~~~ly~vGG~~~~~~l~~ve~ydp~~d~W~~~ 553 (571)
T KOG4441|consen 485 DGTSALSSVERYDPETNQWTMVAPMTSPRSAVGVVVLGGKLYAVGGFDGNNNLNTVECYDPETDTWTEV 553 (571)
T ss_pred cCCCccceEEEEcCCCCceeEcccCccccccccEEEECCEEEEEecccCccccceeEEcCCCCCceeeC
Confidence 763 77788876543322 12223333444556788888898876 466676665544443
No 363
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=97.54 E-value=0.00023 Score=63.93 Aligned_cols=108 Identities=15% Similarity=0.169 Sum_probs=84.7
Q ss_pred eEEEEcCCCCEEEEEe----CCCcEEEEEccCCeEEEEeecCCCceEEEEeCCCC-eEEEEcCCCeEEEEEcCCCCCCcc
Q 047325 158 SCMSLDQDCGLLYTAS----WDRTFKVWRISDSKCLESVSAHDDAVNSVVSSSEG-LIFTGSADGTVKVWKREQHGKGTK 232 (368)
Q Consensus 158 ~~~~~~~~~~~l~~~~----~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~ 232 (368)
+-..|+|...++++++ ..|.|.||- .+|++..... ..-.+++++|+|.. .|+.|-.-|.+.+|......
T Consensus 19 ti~SWHPsePlfAVA~fS~er~GSVtIfa-dtGEPqr~Vt-~P~hatSLCWHpe~~vLa~gwe~g~~~v~~~~~~e---- 92 (1416)
T KOG3617|consen 19 TISSWHPSEPLFAVASFSPERGGSVTIFA-DTGEPQRDVT-YPVHATSLCWHPEEFVLAQGWEMGVSDVQKTNTTE---- 92 (1416)
T ss_pred cccccCCCCceeEEEEecCCCCceEEEEe-cCCCCCcccc-cceehhhhccChHHHHHhhccccceeEEEecCCce----
Confidence 3467999999998886 357888874 5666554433 22345679999999 88888889999999986542
Q ss_pred cccceeeccccccEEEEEEcCCCCEEEEecCCCcEEEEeCC
Q 047325 233 HSLAQTLLKQECAVTALVVSSSRSIVYCGSSDGLVNFWERE 273 (368)
Q Consensus 233 ~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~ 273 (368)
.......|..+|..+.|+++|..++++..-|.+.+|...
T Consensus 93 --~htv~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d 131 (1416)
T KOG3617|consen 93 --THTVVETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYD 131 (1416)
T ss_pred --eeeeccCCCCCceeEEecCCCCeEEEcCCCceeEEEEee
Confidence 234456789999999999999999999999999999865
No 364
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=97.53 E-value=0.048 Score=46.97 Aligned_cols=158 Identities=16% Similarity=0.176 Sum_probs=106.4
Q ss_pred CEeEEEEcCCCCEEEEEeC---CCcEEEEEccCCeEEEEeecCCCceEEEEeCCCC-eEEEE-cCCCeEEEEEcCCCCCC
Q 047325 156 AVSCMSLDQDCGLLYTASW---DRTFKVWRISDSKCLESVSAHDDAVNSVVSSSEG-LIFTG-SADGTVKVWKREQHGKG 230 (368)
Q Consensus 156 ~v~~~~~~~~~~~l~~~~~---d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~-~~dg~i~i~d~~~~~~~ 230 (368)
....++++++++.+.++.. ++.+.+.|..+.+.+.....-..+ ..+++.|++ .++.. ..++.|.+.|.+.....
T Consensus 117 ~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~~~vG~~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~ 195 (381)
T COG3391 117 GPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTATIPVGNTP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVV 195 (381)
T ss_pred CCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEEEEecCCCc-ceEEECCCCCeEEEEecCCCeEEEEeCCCccee
Confidence 4467899999988877765 689999999999988886544444 889999999 44444 47899999997654221
Q ss_pred cccccceeeccccccEEEEEEcCCCCEEEEecCC---CcEEEEeCCCccccceeeecc--ceEEEEEEeCCCEEEEeeC-
Q 047325 231 TKHSLAQTLLKQECAVTALVVSSSRSIVYCGSSD---GLVNFWEREKQLSHGGVLKGH--KLAVLCLAAAGKLVFSGSA- 304 (368)
Q Consensus 231 ~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d---g~i~i~d~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~- 304 (368)
. . ..............+.++|+++.+...... +.+...|..++.......... ...-..+.|++..+.+...
T Consensus 196 ~-~-~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~v~~~~~~~~~~~~~~v~~~p~g~~~yv~~~~ 273 (381)
T COG3391 196 R-G-SVGSLVGVGTGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTATGNVTATDLPVGSGAPRGVAVDPAGKAAYVANSQ 273 (381)
T ss_pred c-c-ccccccccCCCCceEEECCCCCEEEEEeccCCCceEEEEeCCCceEEEeccccccCCCCceeECCCCCEEEEEecC
Confidence 0 0 001112223345678899999976665444 588889988765543322221 2334678899998888744
Q ss_pred CCeEEEEecCCC
Q 047325 305 DKTICVWRRDGA 316 (368)
Q Consensus 305 dg~i~iw~~~~~ 316 (368)
.+.+.+-|..+.
T Consensus 274 ~~~V~vid~~~~ 285 (381)
T COG3391 274 GGTVSVIDGATD 285 (381)
T ss_pred CCeEEEEeCCCC
Confidence 478888876654
No 365
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=97.52 E-value=0.0042 Score=53.72 Aligned_cols=116 Identities=15% Similarity=0.113 Sum_probs=67.0
Q ss_pred CCEeEEEEcCCCCEEEEEe-CCC--cEEEEEccCCeEEEEeecCCCceEEEEeCCCC--eEEEEcCCCeEEEEEcCCCCC
Q 047325 155 DAVSCMSLDQDCGLLYTAS-WDR--TFKVWRISDSKCLESVSAHDDAVNSVVSSSEG--LIFTGSADGTVKVWKREQHGK 229 (368)
Q Consensus 155 ~~v~~~~~~~~~~~l~~~~-~d~--~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~--~l~~~~~dg~i~i~d~~~~~~ 229 (368)
..-..-+|+|||+.|+-+. .|| .|.++|+..+... .+....+.-..=.|+|+| .+++.+..|.-.||-.+....
T Consensus 238 g~~~~P~fspDG~~l~f~~~rdg~~~iy~~dl~~~~~~-~Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~ 316 (425)
T COG0823 238 GNNGAPAFSPDGSKLAFSSSRDGSPDIYLMDLDGKNLP-RLTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGS 316 (425)
T ss_pred CccCCccCCCCCCEEEEEECCCCCccEEEEcCCCCcce-ecccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCC
Confidence 3344568999998776554 455 4667788776633 344333333355899999 556666677655554443322
Q ss_pred CcccccceeeccccccEEEEEEcCCCCEEEEecC-CCc--EEEEeCCCcc
Q 047325 230 GTKHSLAQTLLKQECAVTALVVSSSRSIVYCGSS-DGL--VNFWEREKQL 276 (368)
Q Consensus 230 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-dg~--i~i~d~~~~~ 276 (368)
....+......-..-.++|+|++++..+. +|. |.+.|+.++.
T Consensus 317 -----~~~riT~~~~~~~~p~~SpdG~~i~~~~~~~g~~~i~~~~~~~~~ 361 (425)
T COG0823 317 -----QVTRLTFSGGGNSNPVWSPDGDKIVFESSSGGQWDIDKNDLASGG 361 (425)
T ss_pred -----ceeEeeccCCCCcCccCCCCCCEEEEEeccCCceeeEEeccCCCC
Confidence 11222222222226678999998887664 344 5566665443
No 366
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=97.52 E-value=0.064 Score=48.27 Aligned_cols=176 Identities=10% Similarity=0.028 Sum_probs=87.9
Q ss_pred ecCCEEEEccCCCcEEEEcCCcceeccc----CCC--CCee-EEEEeCCEEEEEeC------CCeEEEEeecCCCccccc
Q 047325 52 ASKDLLYTGSDSKNIRVWKNLKEFCGFK----ASS--GLVK-AIVISGEKIFTGHQ------DGKIRVWKISPKNQSVHK 118 (368)
Q Consensus 52 ~~~~~l~s~~~dg~i~iw~~~~~~~~~~----~~~--~~v~-~~~~~~~~l~s~~~------dg~i~vw~~~~~~~~~~~ 118 (368)
+.++.++.++.|+.+.-.|..+.....+ .+. ..+. +-...++.++.+.. +|.|..+|.++++.....
T Consensus 118 v~~~~v~v~t~dg~l~ALDa~TGk~~W~~~~~~~~~~~~~tssP~v~~g~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~ 197 (527)
T TIGR03075 118 LYDGKVFFGTLDARLVALDAKTGKVVWSKKNGDYKAGYTITAAPLVVKGKVITGISGGEFGVRGYVTAYDAKTGKLVWRR 197 (527)
T ss_pred EECCEEEEEcCCCEEEEEECCCCCEEeecccccccccccccCCcEEECCEEEEeecccccCCCcEEEEEECCCCceeEec
Confidence 3445666777788887777764432211 111 1111 11223556666643 689999999999877655
Q ss_pred cCCccccceeeee-ccCCCCceeEecccceeeeeecCCCEe-EEEEcCCCCEEEEEeCC----------------CcEEE
Q 047325 119 RAGTLPTLKDIFK-SSIKPSNYIEVRRHRTALWIRHSDAVS-CMSLDQDCGLLYTASWD----------------RTFKV 180 (368)
Q Consensus 119 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~v~-~~~~~~~~~~l~~~~~d----------------~~i~i 180 (368)
............. .......-...... ..+..-...+. .+.+.|...+++.+..+ ..|.-
T Consensus 198 ~~~p~~~~~~~~~~~~~~~~~~~~tw~~--~~~~~gg~~~W~~~s~D~~~~lvy~~tGnp~p~~~~~r~gdnl~~~s~vA 275 (527)
T TIGR03075 198 YTVPGDMGYLDKADKPVGGEPGAKTWPG--DAWKTGGGATWGTGSYDPETNLIYFGTGNPSPWNSHLRPGDNLYTSSIVA 275 (527)
T ss_pred cCcCCCcccccccccccccccccCCCCC--CccccCCCCccCceeEcCCCCeEEEeCCCCCCCCCCCCCCCCccceeEEE
Confidence 4332110000000 00000000000000 00100111222 34556655555555411 16888
Q ss_pred EEccCCeEEEEeecCCCce---------EEEEeCCCC----eEEEEcCCCeEEEEEcCCCCC
Q 047325 181 WRISDSKCLESVSAHDDAV---------NSVVSSSEG----LIFTGSADGTVKVWKREQHGK 229 (368)
Q Consensus 181 wd~~~~~~~~~~~~~~~~v---------~~~~~~~~~----~l~~~~~dg~i~i~d~~~~~~ 229 (368)
.|+++|+..-.++.....+ .-+....+| .++.+..+|.+++.|.++++.
T Consensus 276 ld~~TG~~~W~~Q~~~~D~wD~d~~~~p~l~d~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~ 337 (527)
T TIGR03075 276 RDPDTGKIKWHYQTTPHDEWDYDGVNEMILFDLKKDGKPRKLLAHADRNGFFYVLDRTNGKL 337 (527)
T ss_pred EccccCCEEEeeeCCCCCCccccCCCCcEEEEeccCCcEEEEEEEeCCCceEEEEECCCCce
Confidence 8999999887776422211 122222344 677899999999999987643
No 367
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=97.47 E-value=0.027 Score=51.08 Aligned_cols=159 Identities=14% Similarity=0.207 Sum_probs=84.9
Q ss_pred EEEEcCCCCEEEEEeCC------CcEEEEEccCCeEEE--EeecCCCceEEEEeCCCC-eEEEEcCCCe-----EEEEEc
Q 047325 159 CMSLDQDCGLLYTASWD------RTFKVWRISDSKCLE--SVSAHDDAVNSVVSSSEG-LIFTGSADGT-----VKVWKR 224 (368)
Q Consensus 159 ~~~~~~~~~~l~~~~~d------~~i~iwd~~~~~~~~--~~~~~~~~v~~~~~~~~~-~l~~~~~dg~-----i~i~d~ 224 (368)
+++.. ++...++||.| ..+..||..+.+=.. .+...... ..++.. +| ..++|+.||. +..||.
T Consensus 327 ~~~~~-~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~~a~M~~~R~~-~~v~~l-~g~iYavGG~dg~~~l~svE~YDp 403 (571)
T KOG4441|consen 327 GVAVL-NGKLYVVGGYDSGSDRLSSVERYDPRTNQWTPVAPMNTKRSD-FGVAVL-DGKLYAVGGFDGEKSLNSVECYDP 403 (571)
T ss_pred cEEEE-CCEEEEEccccCCCcccceEEEecCCCCceeccCCccCcccc-ceeEEE-CCEEEEEeccccccccccEEEecC
Confidence 44444 34678888888 356778877665222 11111111 112222 34 7788888864 777887
Q ss_pred CCCCCCcccccceeeccccccEEEEEEcCCCCEEEEecCCC------cEEEEeCCCccccc-eeeeccceEEEEEEeCCC
Q 047325 225 EQHGKGTKHSLAQTLLKQECAVTALVVSSSRSIVYCGSSDG------LVNFWEREKQLSHG-GVLKGHKLAVLCLAAAGK 297 (368)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg------~i~i~d~~~~~~~~-~~~~~~~~~~~~~~~~~~ 297 (368)
++..= .............-.+.+ ++.+.++|+.++ .+..||..+..-.. ...............++.
T Consensus 404 ~~~~W----~~va~m~~~r~~~gv~~~--~g~iYi~GG~~~~~~~l~sve~YDP~t~~W~~~~~M~~~R~~~g~a~~~~~ 477 (571)
T KOG4441|consen 404 VTNKW----TPVAPMLTRRSGHGVAVL--GGKLYIIGGGDGSSNCLNSVECYDPETNTWTLIAPMNTRRSGFGVAVLNGK 477 (571)
T ss_pred CCCcc----cccCCCCcceeeeEEEEE--CCEEEEEcCcCCCccccceEEEEcCCCCceeecCCcccccccceEEEECCE
Confidence 75421 122212122222222223 677788887554 46778877543211 111111112224445888
Q ss_pred EEEEeeCCCe-----EEEEecCCCceeeeEeeec
Q 047325 298 LVFSGSADKT-----ICVWRRDGAIHTCLSVLTG 326 (368)
Q Consensus 298 ~l~~~~~dg~-----i~iw~~~~~~~~~~~~~~~ 326 (368)
+.+.||.|+. |..||..+.++..+.....
T Consensus 478 iYvvGG~~~~~~~~~VE~ydp~~~~W~~v~~m~~ 511 (571)
T KOG4441|consen 478 IYVVGGFDGTSALSSVERYDPETNQWTMVAPMTS 511 (571)
T ss_pred EEEECCccCCCccceEEEEcCCCCceeEcccCcc
Confidence 8899998873 6778887776666644443
No 368
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=97.38 E-value=0.025 Score=48.24 Aligned_cols=186 Identities=10% Similarity=0.020 Sum_probs=93.6
Q ss_pred CCCEeEEEEcCCCCEEEEEeCCCcEEEEEccCCeEEEEee-cC----------------CCceEEEEeCCCC-eEEEEc-
Q 047325 154 SDAVSCMSLDQDCGLLYTASWDRTFKVWRISDSKCLESVS-AH----------------DDAVNSVVSSSEG-LIFTGS- 214 (368)
Q Consensus 154 ~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~-~~----------------~~~v~~~~~~~~~-~l~~~~- 214 (368)
...+....|+|+|+.++-.. ++.|.+.++.+++..+.-. +. -+.-..+.|+||+ +|+...
T Consensus 42 ~~~~~~~~~sP~g~~~~~v~-~~nly~~~~~~~~~~~lT~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~ 120 (353)
T PF00930_consen 42 PPKLQDAKWSPDGKYIAFVR-DNNLYLRDLATGQETQLTTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRF 120 (353)
T ss_dssp ETTBSEEEE-SSSTEEEEEE-TTEEEEESSTTSEEEESES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEE
T ss_pred ccccccceeecCCCeeEEEe-cCceEEEECCCCCeEEeccccceeEEcCccceeccccccccccceEECCCCCEEEEEEE
Confidence 35677899999999988886 5889999988775443221 10 1123567899998 554432
Q ss_pred CCCeEEEE-----------------------------------EcCCCCCCcccccceeeccccccEEEEEEcCCCCEEE
Q 047325 215 ADGTVKVW-----------------------------------KREQHGKGTKHSLAQTLLKQECAVTALVVSSSRSIVY 259 (368)
Q Consensus 215 ~dg~i~i~-----------------------------------d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~ 259 (368)
.+..|+.+ |+..+... ..............+..+.|.++++.|+
T Consensus 121 d~~~v~~~~~~~~~~~~~~yp~~~~~~YPk~G~~np~v~l~v~~~~~~~~~-~~~~~~~~~~~~~yl~~v~W~~d~~~l~ 199 (353)
T PF00930_consen 121 DEREVPEYPLPDYSPPDSQYPEVESIRYPKAGDPNPRVSLFVVDLASGKTT-ELDPPNSLNPQDYYLTRVGWSPDGKRLW 199 (353)
T ss_dssp E-TTS-EEEEEEESSSTESS-EEEEEE--BTTS---EEEEEEEESSSTCCC-EE---HHHHTSSEEEEEEEEEETTEEEE
T ss_pred CCcCCceEEeeccCCccccCCcccccccCCCCCcCCceEEEEEECCCCcEE-EeeeccccCCCccCcccceecCCCcEEE
Confidence 23333322 33222110 0000001122345678888988888444
Q ss_pred Ee--cCCC---cEEEEeCCCccccceeeeccceE-----EEEEE-eC-CCEEEEeeCCCeEEEEecCCCceeeeEeeecc
Q 047325 260 CG--SSDG---LVNFWEREKQLSHGGVLKGHKLA-----VLCLA-AA-GKLVFSGSADKTICVWRRDGAIHTCLSVLTGH 327 (368)
Q Consensus 260 ~~--~~dg---~i~i~d~~~~~~~~~~~~~~~~~-----~~~~~-~~-~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h 327 (368)
.. ..+. .+.+.|..++............. ...+. ++ +.+|.....||.-+||-++..... ...+...
T Consensus 200 ~~~~nR~q~~~~l~~~d~~tg~~~~~~~e~~~~Wv~~~~~~~~~~~~~~~~l~~s~~~G~~hly~~~~~~~~-~~~lT~G 278 (353)
T PF00930_consen 200 VQWLNRDQNRLDLVLCDASTGETRVVLEETSDGWVDVYDPPHFLGPDGNEFLWISERDGYRHLYLYDLDGGK-PRQLTSG 278 (353)
T ss_dssp EEEEETTSTEEEEEEEEECTTTCEEEEEEESSSSSSSSSEEEE-TTTSSEEEEEEETTSSEEEEEEETTSSE-EEESS-S
T ss_pred EEEcccCCCEEEEEEEECCCCceeEEEEecCCcceeeecccccccCCCCEEEEEEEcCCCcEEEEEcccccc-eeccccC
Confidence 32 2222 35566765543322111111111 22333 33 456666667887777665543323 3344444
Q ss_pred ccCeeE-EEEecCCee
Q 047325 328 TGPVKC-LAVEEDRDS 342 (368)
Q Consensus 328 ~~~v~~-l~~~~~~~~ 342 (368)
.-.|+. +.+++++..
T Consensus 279 ~~~V~~i~~~d~~~~~ 294 (353)
T PF00930_consen 279 DWEVTSILGWDEDNNR 294 (353)
T ss_dssp SS-EEEEEEEECTSSE
T ss_pred ceeecccceEcCCCCE
Confidence 555755 677888764
No 369
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=97.34 E-value=0.065 Score=44.25 Aligned_cols=191 Identities=9% Similarity=0.075 Sum_probs=103.6
Q ss_pred EEEEccCCCcEEEEcCCcc-eecccCCCCCeeEEEEe-CCEEEEEeCCCeEEEEeecCCCcc-ccccCCccccceeeeec
Q 047325 56 LLYTGSDSKNIRVWKNLKE-FCGFKASSGLVKAIVIS-GEKIFTGHQDGKIRVWKISPKNQS-VHKRAGTLPTLKDIFKS 132 (368)
Q Consensus 56 ~l~s~~~dg~i~iw~~~~~-~~~~~~~~~~v~~~~~~-~~~l~s~~~dg~i~vw~~~~~~~~-~~~~~~~~~~~~~~~~~ 132 (368)
++.+--..+.|.-|+..+. ...+............+ +..|+++. . -+.+++.+++... .........
T Consensus 39 L~w~DI~~~~i~r~~~~~g~~~~~~~p~~~~~~~~~d~~g~Lv~~~-~-g~~~~~~~~~~~~t~~~~~~~~~-------- 108 (307)
T COG3386 39 LLWVDILGGRIHRLDPETGKKRVFPSPGGFSSGALIDAGGRLIACE-H-GVRLLDPDTGGKITLLAEPEDGL-------- 108 (307)
T ss_pred EEEEeCCCCeEEEecCCcCceEEEECCCCcccceeecCCCeEEEEc-c-ccEEEeccCCceeEEeccccCCC--------
Confidence 5666666778888887644 33333333332333344 44555443 3 3445665544431 111110000
Q ss_pred cCCCCceeEecccceeeeeecCCCEeEEEEcCCCCEEEEEeC-----------CCcEEEEEccCCeEEEEeecCCCceEE
Q 047325 133 SIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCGLLYTASW-----------DRTFKVWRISDSKCLESVSAHDDAVNS 201 (368)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-----------d~~i~iwd~~~~~~~~~~~~~~~~v~~ 201 (368)
.....+.+...|+|.+.++... -|.|+-+|. .+..+..+..+-..-+.
T Consensus 109 --------------------~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p-~g~~~~l~~~~~~~~NG 167 (307)
T COG3386 109 --------------------PLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDP-DGGVVRLLDDDLTIPNG 167 (307)
T ss_pred --------------------CcCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcC-CCCEEEeecCcEEecCc
Confidence 1234456777787765544333 133444443 56666666655566688
Q ss_pred EEeCCCC-eEEEE-cCCCeEEEEEcCC-CCCCcccccceeeccccccEEEEEEcCCCCEEEEecCCC-cEEEEeCCCccc
Q 047325 202 VVSSSEG-LIFTG-SADGTVKVWKREQ-HGKGTKHSLAQTLLKQECAVTALVVSSSRSIVYCGSSDG-LVNFWEREKQLS 277 (368)
Q Consensus 202 ~~~~~~~-~l~~~-~~dg~i~i~d~~~-~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg-~i~i~d~~~~~~ 277 (368)
++|+||+ .|+.+ +..+.|.-|++.. .................+..-.++...+|++-+++..+| .|..|+.+ ++.
T Consensus 168 la~SpDg~tly~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~pd-G~l 246 (307)
T COG3386 168 LAFSPDGKTLYVADTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRVVRFNPD-GKL 246 (307)
T ss_pred eEECCCCCEEEEEeCCCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecccCCceEEEECCC-CcE
Confidence 9999999 55544 4468899888863 111111111222223445666778888888776555544 89999988 444
Q ss_pred c
Q 047325 278 H 278 (368)
Q Consensus 278 ~ 278 (368)
.
T Consensus 247 ~ 247 (307)
T COG3386 247 L 247 (307)
T ss_pred E
Confidence 4
No 370
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=97.27 E-value=0.0014 Score=49.73 Aligned_cols=139 Identities=18% Similarity=0.266 Sum_probs=79.9
Q ss_pred EEEEccCCCcEEEEcCCcceeccc---CCCCCeeEEEEeCCEEEEEeCCCeEEEEeecCCCccccccCCccccceeeeec
Q 047325 56 LLYTGSDSKNIRVWKNLKEFCGFK---ASSGLVKAIVISGEKIFTGHQDGKIRVWKISPKNQSVHKRAGTLPTLKDIFKS 132 (368)
Q Consensus 56 ~l~s~~~dg~i~iw~~~~~~~~~~---~~~~~v~~~~~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~ 132 (368)
.+..-+.||.|+-+++.+.....+ .|... ..+.-.+..++.|+.+|.|.+|..............
T Consensus 32 ~l~~~sa~~~v~~~~~~k~k~s~rse~~~~e~-~~v~~~~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s----------- 99 (238)
T KOG2444|consen 32 LLRATSADGLVRERKVRKHKESCRSERFIDEG-QRVVTASAKLMVGTSDGAVYVFNWNLEGAHSDRVCS----------- 99 (238)
T ss_pred hhccccCCcccccchhhhhhhhhhhhhhhhcc-eeecccCceEEeecccceEEEecCCccchHHHhhhc-----------
Confidence 344556788888887654322111 11111 222222778999999999999988733321111110
Q ss_pred cCCCCceeEecccceeeeeecCCCEe-EEEEcCCCCEEEEEeCCCcEEEEEccCCeEEEEeecCC-CceEEEEeCC-CCe
Q 047325 133 SIKPSNYIEVRRHRTALWIRHSDAVS-CMSLDQDCGLLYTASWDRTFKVWRISDSKCLESVSAHD-DAVNSVVSSS-EGL 209 (368)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~v~-~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~-~~v~~~~~~~-~~~ 209 (368)
-...|. .+..-.++.+..+++.||.|+.|++.-++.+.....|+ .++..+.... +..
T Consensus 100 --------------------~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~~~~e~~ivv~sd~~ 159 (238)
T KOG2444|consen 100 --------------------GEESIDLGIPNGRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQHNFESGEELIVVGSDEF 159 (238)
T ss_pred --------------------ccccceeccccccccceeEEeccCCceeeeccccCceeeeeccccCCCcceeEEecCCce
Confidence 111222 22333356688999999999999998888877777676 3333333322 224
Q ss_pred EEEE--cCCCeEEEEEcCC
Q 047325 210 IFTG--SADGTVKVWKREQ 226 (368)
Q Consensus 210 l~~~--~~dg~i~i~d~~~ 226 (368)
+..+ +.|..++.|++..
T Consensus 160 i~~a~~S~d~~~k~W~ve~ 178 (238)
T KOG2444|consen 160 LKIADTSHDRVLKKWNVEK 178 (238)
T ss_pred EEeeccccchhhhhcchhh
Confidence 4444 5566666666643
No 371
>PHA02713 hypothetical protein; Provisional
Probab=97.26 E-value=0.031 Score=50.72 Aligned_cols=94 Identities=11% Similarity=0.084 Sum_probs=47.6
Q ss_pred cEEEEEccCCeE--EEEeecCCCceEEEEeCCCCeEEEEcCC------CeEEEEEcCC-CCCCcccccceeeccccccEE
Q 047325 177 TFKVWRISDSKC--LESVSAHDDAVNSVVSSSEGLIFTGSAD------GTVKVWKREQ-HGKGTKHSLAQTLLKQECAVT 247 (368)
Q Consensus 177 ~i~iwd~~~~~~--~~~~~~~~~~v~~~~~~~~~~l~~~~~d------g~i~i~d~~~-~~~~~~~~~~~~~~~~~~~i~ 247 (368)
.+..||..+.+= +..+...... .+++...+...+.|+.+ ..+..||.+. .. ......+........
T Consensus 433 ~ve~YDP~td~W~~v~~m~~~r~~-~~~~~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~----W~~~~~m~~~r~~~~ 507 (557)
T PHA02713 433 KVIRYDTVNNIWETLPNFWTGTIR-PGVVSHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNG----WELITTTESRLSALH 507 (557)
T ss_pred eEEEECCCCCeEeecCCCCccccc-CcEEEECCEEEEEeCCCCCCccceeEEEecCCCCCC----eeEccccCcccccce
Confidence 477788776542 2222111111 12333333355556543 2467888875 21 122222222222233
Q ss_pred EEEEcCCCCEEEEecCCC--cEEEEeCCCccc
Q 047325 248 ALVVSSSRSIVYCGSSDG--LVNFWEREKQLS 277 (368)
Q Consensus 248 ~~~~~~~~~~l~~~~~dg--~i~i~d~~~~~~ 277 (368)
.+.+ ++++.++|+.+| .+..||..+.+-
T Consensus 508 ~~~~--~~~iyv~Gg~~~~~~~e~yd~~~~~W 537 (557)
T PHA02713 508 TILH--DNTIMMLHCYESYMLQDTFNVYTYEW 537 (557)
T ss_pred eEEE--CCEEEEEeeecceeehhhcCcccccc
Confidence 3333 678888898888 677788776543
No 372
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.16 E-value=0.0064 Score=52.09 Aligned_cols=130 Identities=16% Similarity=0.215 Sum_probs=84.9
Q ss_pred eEEEEcCCCeEEEEEcCCCCCCcccccceeeccccccEEEEEEcCCCC-------EEEEecCCCcEEEEeCCCccc-cce
Q 047325 209 LIFTGSADGTVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSSSRS-------IVYCGSSDGLVNFWEREKQLS-HGG 280 (368)
Q Consensus 209 ~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-------~l~~~~~dg~i~i~d~~~~~~-~~~ 280 (368)
++..+.....++-.|++.+ +.+..+.-+.. |.-+.+.|+.+ .-+.|-.+..|.-||.+-.-. ...
T Consensus 348 il~~~~~~~~l~klDIE~G------KIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~ 420 (644)
T KOG2395|consen 348 ILMDGGEQDKLYKLDIERG------KIVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLA 420 (644)
T ss_pred EeeCCCCcCcceeeecccc------eeeeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCcceee
Confidence 5566666777888888766 34555555554 67777777543 224466788899999883222 222
Q ss_pred eeeccceE----EEEEEe-CCCEEEEeeCCCeEEEEecCCCceeeeEeeeccccCeeEEEEecCCeeeecCC
Q 047325 281 VLKGHKLA----VLCLAA-AGKLVFSGSADKTICVWRRDGAIHTCLSVLTGHTGPVKCLAVEEDRDSSSSTS 347 (368)
Q Consensus 281 ~~~~~~~~----~~~~~~-~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~ 347 (368)
....|... -.|+.. ...+|++||.+|.||+||--.. .....+++-..+|..|..+.+|.++...+
T Consensus 421 ~~q~kqy~~k~nFsc~aTT~sG~IvvgS~~GdIRLYdri~~--~AKTAlPgLG~~I~hVdvtadGKwil~Tc 490 (644)
T KOG2395|consen 421 VVQSKQYSTKNNFSCFATTESGYIVVGSLKGDIRLYDRIGR--RAKTALPGLGDAIKHVDVTADGKWILATC 490 (644)
T ss_pred eeeccccccccccceeeecCCceEEEeecCCcEEeehhhhh--hhhhcccccCCceeeEEeeccCcEEEEec
Confidence 33333221 134443 4679999999999999986322 33445778889999999999999654433
No 373
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=97.15 E-value=0.1 Score=42.72 Aligned_cols=224 Identities=12% Similarity=0.185 Sum_probs=120.5
Q ss_pred eCCEEEEEeCCCeEEEEeecCCCccccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcCCCCEEE
Q 047325 91 SGEKIFTGHQDGKIRVWKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCGLLY 170 (368)
Q Consensus 91 ~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~ 170 (368)
.++.|+.|+.+| +.+++.......... .+...|..+...|+-+.++
T Consensus 6 ~~~~L~vGt~~G-l~~~~~~~~~~~~~i---------------------------------~~~~~I~ql~vl~~~~~ll 51 (275)
T PF00780_consen 6 WGDRLLVGTEDG-LYVYDLSDPSKPTRI---------------------------------LKLSSITQLSVLPELNLLL 51 (275)
T ss_pred CCCEEEEEECCC-EEEEEecCCccceeE---------------------------------eecceEEEEEEecccCEEE
Confidence 378999999998 888888222211110 0334589999999877777
Q ss_pred EEeCCCcEEEEEccCCeEEEEe--------------ecCCCceEEEE--eCCCC-eEEEEcCCCeEEEEEcCCCCCCccc
Q 047325 171 TASWDRTFKVWRISDSKCLESV--------------SAHDDAVNSVV--SSSEG-LIFTGSADGTVKVWKREQHGKGTKH 233 (368)
Q Consensus 171 ~~~~d~~i~iwd~~~~~~~~~~--------------~~~~~~v~~~~--~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~ 233 (368)
+-+ |+.+.++++..-...... ......+...+ -...+ ..++......|.+|..........
T Consensus 52 vLs-d~~l~~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~- 129 (275)
T PF00780_consen 52 VLS-DGQLYVYDLDSLEPVSTSAPLAFPKSRSLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFS- 129 (275)
T ss_pred EEc-CCccEEEEchhhccccccccccccccccccccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCccccc-
Confidence 665 599999998765443311 11222344444 12233 444444555999998876321110
Q ss_pred ccceeeccccccEEEEEEcCCCCEEEEecCCCcEEEEeCCCccccceeee-c-----------cceEEEEEEe-CCCEEE
Q 047325 234 SLAQTLLKQECAVTALVVSSSRSIVYCGSSDGLVNFWEREKQLSHGGVLK-G-----------HKLAVLCLAA-AGKLVF 300 (368)
Q Consensus 234 ~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~-~-----------~~~~~~~~~~-~~~~l~ 300 (368)
...+.+ .....+..++|. ++.++.|..++ ..+.|+.++... .... . ...++..+.. ++.+|+
T Consensus 130 ~~~ke~-~lp~~~~~i~~~--~~~i~v~~~~~-f~~idl~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Ll 204 (275)
T PF00780_consen 130 KLLKEI-SLPDPPSSIAFL--GNKICVGTSKG-FYLIDLNTGSPS-ELLDPSDSSSSFKSRNSSSKPLGIFQLSDNEFLL 204 (275)
T ss_pred ceeEEE-EcCCCcEEEEEe--CCEEEEEeCCc-eEEEecCCCCce-EEeCccCCcchhhhcccCCCceEEEEeCCceEEE
Confidence 122222 234678888887 56777776554 788888854332 1111 0 1122333333 355665
Q ss_pred EeeCCCeEEEEecCCCceeeeEeeeccccCeeEEEEecCCeeeecCCcceEEEEEeeCCc
Q 047325 301 SGSADKTICVWRRDGAIHTCLSVLTGHTGPVKCLAVEEDRDSSSSTSSCAQRWIVYSGSL 360 (368)
Q Consensus 301 ~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~w~l~sg~~ 360 (368)
+- |..-.+.|..... .....+.- ...+.++++... -.++..++.+.+|.+.+|..
T Consensus 205 ~~--~~~g~fv~~~G~~-~r~~~i~W-~~~p~~~~~~~p-yli~~~~~~iEV~~~~~~~l 259 (275)
T PF00780_consen 205 CY--DNIGVFVNKNGEP-SRKSTIQW-SSAPQSVAYSSP-YLIAFSSNSIEVRSLETGEL 259 (275)
T ss_pred Ee--cceEEEEcCCCCc-CcccEEEc-CCchhEEEEECC-EEEEECCCEEEEEECcCCcE
Confidence 43 3333333443321 11122322 235566777543 34455556688887777643
No 374
>PHA03098 kelch-like protein; Provisional
Probab=97.14 E-value=0.058 Score=49.04 Aligned_cols=160 Identities=14% Similarity=0.117 Sum_probs=76.7
Q ss_pred CCCEEEEEeCC-----CcEEEEEccCCeEEE--EeecCCCceEEEEeCCCCeEEEEcCC------CeEEEEEcCCCCCCc
Q 047325 165 DCGLLYTASWD-----RTFKVWRISDSKCLE--SVSAHDDAVNSVVSSSEGLIFTGSAD------GTVKVWKREQHGKGT 231 (368)
Q Consensus 165 ~~~~l~~~~~d-----~~i~iwd~~~~~~~~--~~~~~~~~v~~~~~~~~~~l~~~~~d------g~i~i~d~~~~~~~~ 231 (368)
++..++.||.+ ..+..||..+.+-.. .+...... .+++...+..++.|+.+ ..+..||+.+..-
T Consensus 342 ~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~lp~~r~~-~~~~~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W-- 418 (534)
T PHA03098 342 NNRIYVIGGIYNSISLNTVESWKPGESKWREEPPLIFPRYN-PCVVNVNNLIYVIGGISKNDELLKTVECFSLNTNKW-- 418 (534)
T ss_pred CCEEEEEeCCCCCEecceEEEEcCCCCceeeCCCcCcCCcc-ceEEEECCEEEEECCcCCCCcccceEEEEeCCCCee--
Confidence 45677777765 346778877654221 11111111 12222233355556532 4578888875421
Q ss_pred ccccceeeccccccEEEEEEcCCCCEEEEecCC--------CcEEEEeCCCccccce-eeeccceEEEEEEeCCCEEEEe
Q 047325 232 KHSLAQTLLKQECAVTALVVSSSRSIVYCGSSD--------GLVNFWEREKQLSHGG-VLKGHKLAVLCLAAAGKLVFSG 302 (368)
Q Consensus 232 ~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d--------g~i~i~d~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~ 302 (368)
............. +++ ..++.+.+.|+.+ ..+.+||..+.+-... ..............++++++.|
T Consensus 419 --~~~~~~p~~r~~~-~~~-~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~~~~iyv~G 494 (534)
T PHA03098 419 --SKGSPLPISHYGG-CAI-YHDGKIYVIGGISYIDNIKVYNIVESYNPVTNKWTELSSLNFPRINASLCIFNNKIYVVG 494 (534)
T ss_pred --eecCCCCccccCc-eEE-EECCEEEEECCccCCCCCcccceEEEecCCCCceeeCCCCCcccccceEEEECCEEEEEc
Confidence 1111111111111 122 2255666666643 2388889876432211 1111111112233477888888
Q ss_pred eCC-----CeEEEEecCCCceeeeEeeeccccCe
Q 047325 303 SAD-----KTICVWRRDGAIHTCLSVLTGHTGPV 331 (368)
Q Consensus 303 ~~d-----g~i~iw~~~~~~~~~~~~~~~h~~~v 331 (368)
+.+ +.+.+||.++..+..+..+..+.+.|
T Consensus 495 G~~~~~~~~~v~~yd~~~~~W~~~~~~p~~~~~~ 528 (534)
T PHA03098 495 GDKYEYYINEIEVYDDKTNTWTLFCKFPKVIGSL 528 (534)
T ss_pred CCcCCcccceeEEEeCCCCEEEecCCCcccccce
Confidence 764 46888888877666555544443333
No 375
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=97.14 E-value=0.091 Score=41.85 Aligned_cols=205 Identities=9% Similarity=0.100 Sum_probs=105.2
Q ss_pred eccCcCCcEEEEEecCC---EEEEccCCCcEEEEcCCcc-eecccCC-CCCeeEEEEe-CCEEE-EEeCCCeEEEEeecC
Q 047325 39 SLVREEGHIYSLAASKD---LLYTGSDSKNIRVWKNLKE-FCGFKAS-SGLVKAIVIS-GEKIF-TGHQDGKIRVWKISP 111 (368)
Q Consensus 39 ~~~~h~~~i~~~~~~~~---~l~s~~~dg~i~iw~~~~~-~~~~~~~-~~~v~~~~~~-~~~l~-s~~~dg~i~vw~~~~ 111 (368)
.+.+-...+..|+|+++ ++++....+.|...+.... +...... .+..-.|++. ++.++ +--.++.+.+.++..
T Consensus 16 ~l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~~G~vlr~i~l~g~~D~EgI~y~g~~~~vl~~Er~~~L~~~~~~~ 95 (248)
T PF06977_consen 16 PLPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSLDGKVLRRIPLDGFGDYEGITYLGNGRYVLSEERDQRLYIFTIDD 95 (248)
T ss_dssp E-TT--S-EEEEEEETTTTEEEEEETTTTEEEEEETT--EEEEEE-SS-SSEEEEEE-STTEEEEEETTTTEEEEEEE--
T ss_pred ECCCccCCccccEEcCCCCeEEEEECCCCEEEEEcCCCCEEEEEeCCCCCCceeEEEECCCEEEEEEcCCCcEEEEEEec
Confidence 45566667999999865 7788888888888887633 2222221 3567788887 34444 444589999999865
Q ss_pred CCccccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcCCCCEEEEEeCCCcEEEEEccC---CeE
Q 047325 112 KNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCGLLYTASWDRTFKVWRISD---SKC 188 (368)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~---~~~ 188 (368)
......... ...........++..+-.++|++.++.|+++-...-..++.+.. ...
T Consensus 96 ~~~~~~~~~---------------------~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~ 154 (248)
T PF06977_consen 96 DTTSLDRAD---------------------VQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFD 154 (248)
T ss_dssp --TT--EEE---------------------EEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS-
T ss_pred cccccchhh---------------------ceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccc
Confidence 432111100 00000000112556789999999888888887777777777654 222
Q ss_pred EEEe--------ecCCCceEEEEeCCCC--eEEEEcCCCeEEEEEcCCCCCCcccccceeecc-------ccccEEEEEE
Q 047325 189 LESV--------SAHDDAVNSVVSSSEG--LIFTGSADGTVKVWKREQHGKGTKHSLAQTLLK-------QECAVTALVV 251 (368)
Q Consensus 189 ~~~~--------~~~~~~v~~~~~~~~~--~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~-------~~~~i~~~~~ 251 (368)
+... ......+.++.++|.. +++....+..|..+|.... . .....+.. .-.....++|
T Consensus 155 ~~~~~~~~~~~~~~~~~d~S~l~~~p~t~~lliLS~es~~l~~~d~~G~-~----~~~~~L~~g~~gl~~~~~QpEGIa~ 229 (248)
T PF06977_consen 155 LFVSDDQDLDDDKLFVRDLSGLSYDPRTGHLLILSDESRLLLELDRQGR-V----VSSLSLDRGFHGLSKDIPQPEGIAF 229 (248)
T ss_dssp -EEEE-HHHH-HT--SS---EEEEETTTTEEEEEETTTTEEEEE-TT---E----EEEEE-STTGGG-SS---SEEEEEE
T ss_pred eeeccccccccccceeccccceEEcCCCCeEEEEECCCCeEEEECCCCC-E----EEEEEeCCcccCcccccCCccEEEE
Confidence 1111 1123457788888876 7777888889999995422 1 01111111 1134778999
Q ss_pred cCCCCEEEEecCCCcEEEE
Q 047325 252 SSSRSIVYCGSSDGLVNFW 270 (368)
Q Consensus 252 ~~~~~~l~~~~~dg~i~i~ 270 (368)
.++|++.+++ +-+..++|
T Consensus 230 d~~G~LYIvs-EpNlfy~f 247 (248)
T PF06977_consen 230 DPDGNLYIVS-EPNLFYRF 247 (248)
T ss_dssp -TT--EEEEE-TTTEEEEE
T ss_pred CCCCCEEEEc-CCceEEEe
Confidence 9998655554 55555544
No 376
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=97.11 E-value=0.0022 Score=35.78 Aligned_cols=35 Identities=26% Similarity=0.315 Sum_probs=30.5
Q ss_pred cCCCEeEEEEcCCCCEEEEEeCCCcEEEEEccCCeE
Q 047325 153 HSDAVSCMSLDQDCGLLYTASWDRTFKVWRISDSKC 188 (368)
Q Consensus 153 ~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~ 188 (368)
....|.+++|+|...+||.+..+|.|.++.+ +++.
T Consensus 10 l~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl-~~qr 44 (47)
T PF12894_consen 10 LPSRVSCMSWCPTMDLIALGTEDGEVLVYRL-NWQR 44 (47)
T ss_pred CCCcEEEEEECCCCCEEEEEECCCeEEEEEC-CCcC
Confidence 4467999999999999999999999999998 5543
No 377
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=97.06 E-value=0.22 Score=44.96 Aligned_cols=68 Identities=10% Similarity=0.162 Sum_probs=44.4
Q ss_pred cCCEEEEccCCCcEEEEcCCcceec--ccCCC-CCe----------eEEEEeCCEEEEEeCCCeEEEEeecCCCcccccc
Q 047325 53 SKDLLYTGSDSKNIRVWKNLKEFCG--FKASS-GLV----------KAIVISGEKIFTGHQDGKIRVWKISPKNQSVHKR 119 (368)
Q Consensus 53 ~~~~l~s~~~dg~i~iw~~~~~~~~--~~~~~-~~v----------~~~~~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~ 119 (368)
.++.++.++.++.|.-.|..+.... +.... ..+ ..+.+.++.++.++.|+.+...|.++++......
T Consensus 68 ~~g~vyv~s~~g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av~~~~v~v~t~dg~l~ALDa~TGk~~W~~~ 147 (527)
T TIGR03075 68 VDGVMYVTTSYSRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVALYDGKVFFGTLDARLVALDAKTGKVVWSKK 147 (527)
T ss_pred ECCEEEEECCCCcEEEEECCCCceeeEecCCCCcccccccccccccccceEECCEEEEEcCCCEEEEEECCCCCEEeecc
Confidence 3567777777888888887654322 21110 001 1234557788889999999999999998766554
Q ss_pred C
Q 047325 120 A 120 (368)
Q Consensus 120 ~ 120 (368)
.
T Consensus 148 ~ 148 (527)
T TIGR03075 148 N 148 (527)
T ss_pred c
Confidence 3
No 378
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=97.02 E-value=0.029 Score=43.05 Aligned_cols=50 Identities=14% Similarity=0.115 Sum_probs=43.4
Q ss_pred EEEEcCCCCEEEEEeCCCcEEEEEccCCeEEEEeecCCCceEEEEeCCCC
Q 047325 159 CMSLDQDCGLLYTASWDRTFKVWRISDSKCLESVSAHDDAVNSVVSSSEG 208 (368)
Q Consensus 159 ~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~ 208 (368)
.+++..+|++.+++-..++|.-.|+.+|+.+.+++-....|++++|...+
T Consensus 216 Gm~ID~eG~L~Va~~ng~~V~~~dp~tGK~L~eiklPt~qitsccFgGkn 265 (310)
T KOG4499|consen 216 GMTIDTEGNLYVATFNGGTVQKVDPTTGKILLEIKLPTPQITSCCFGGKN 265 (310)
T ss_pred cceEccCCcEEEEEecCcEEEEECCCCCcEEEEEEcCCCceEEEEecCCC
Confidence 34556688888888888999999999999999999999999999997664
No 379
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.95 E-value=0.0062 Score=56.66 Aligned_cols=102 Identities=20% Similarity=0.272 Sum_probs=71.3
Q ss_pred CCCEEEEecCCCcEEEEeCCCccccceeeeccceEE--EEEEeCCCEEEEeeCCCeEEEEecCCCceeeeEeeeccccCe
Q 047325 254 SRSIVYCGSSDGLVNFWEREKQLSHGGVLKGHKLAV--LCLAAAGKLVFSGSADKTICVWRRDGAIHTCLSVLTGHTGPV 331 (368)
Q Consensus 254 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v 331 (368)
.+-.++.|++.|.+-..|......+...-..-..+| ++++-+|..++.|-.+|.|.+||+..+ +.++.+..|..|.
T Consensus 98 ~~~~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~--k~l~~i~e~~ap~ 175 (1206)
T KOG2079|consen 98 VVVPIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRA--KILKVITEHGAPV 175 (1206)
T ss_pred eeeeEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCC--cceeeeeecCCcc
Confidence 455788899999999999886544222222223444 555568999999999999999999886 5556666566554
Q ss_pred eEE---EEecCCeeeecCCcceEEEEEee
Q 047325 332 KCL---AVEEDRDSSSSTSSCAQRWIVYS 357 (368)
Q Consensus 332 ~~l---~~~~~~~~~~~~~~~~~~w~l~s 357 (368)
+++ .+..++..+.+++..+.+|.+.-
T Consensus 176 t~vi~v~~t~~nS~llt~D~~Gsf~~lv~ 204 (1206)
T KOG2079|consen 176 TGVIFVGRTSQNSKLLTSDTGGSFWKLVF 204 (1206)
T ss_pred ceEEEEEEeCCCcEEEEccCCCceEEEEe
Confidence 444 44455667888888888887653
No 380
>PRK13616 lipoprotein LpqB; Provisional
Probab=96.94 E-value=0.29 Score=44.69 Aligned_cols=146 Identities=16% Similarity=0.124 Sum_probs=75.2
Q ss_pred EeEEEEcCCCCEEEEEeCC------------CcEEEEEccCCeEEEEeecCCCceEEEEeCCCC-eEEEEcCCCeEEEEE
Q 047325 157 VSCMSLDQDCGLLYTASWD------------RTFKVWRISDSKCLESVSAHDDAVNSVVSSSEG-LIFTGSADGTVKVWK 223 (368)
Q Consensus 157 v~~~~~~~~~~~l~~~~~d------------~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~dg~i~i~d 223 (368)
.+.-.|+|+|..+++.... +.+.+.++..++... .....|..+.|+||| .++... ++.|.+--
T Consensus 399 ~t~PsWspDG~~lw~v~dg~~~~~v~~~~~~gql~~~~vd~ge~~~---~~~g~Issl~wSpDG~RiA~i~-~g~v~Va~ 474 (591)
T PRK13616 399 LTRPSWSLDADAVWVVVDGNTVVRVIRDPATGQLARTPVDASAVAS---RVPGPISELQLSRDGVRAAMII-GGKVYLAV 474 (591)
T ss_pred CCCceECCCCCceEEEecCcceEEEeccCCCceEEEEeccCchhhh---ccCCCcCeEEECCCCCEEEEEE-CCEEEEEE
Confidence 5667888988777666432 233333443333322 234579999999999 444433 57777733
Q ss_pred cCCCCCCc-ccccceee-ccccccEEEEEEcCCCCEEEEecCCCcEEEEe--CCCccccceeeec--cceEEEEEEeCCC
Q 047325 224 REQHGKGT-KHSLAQTL-LKQECAVTALVVSSSRSIVYCGSSDGLVNFWE--REKQLSHGGVLKG--HKLAVLCLAAAGK 297 (368)
Q Consensus 224 ~~~~~~~~-~~~~~~~~-~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d--~~~~~~~~~~~~~--~~~~~~~~~~~~~ 297 (368)
+.....+. .......+ ......+..+.|.+++.++ .+..++...+|. +...... .... ....+.+++-...
T Consensus 475 Vvr~~~G~~~l~~~~~l~~~l~~~~~~l~W~~~~~L~-V~~~~~~~~v~~v~vDG~~~~--~~~~~n~~~~v~~vaa~~~ 551 (591)
T PRK13616 475 VEQTEDGQYALTNPREVGPGLGDTAVSLDWRTGDSLV-VGRSDPEHPVWYVNLDGSNSD--ALPSRNLSAPVVAVAASPS 551 (591)
T ss_pred EEeCCCCceeecccEEeecccCCccccceEecCCEEE-EEecCCCCceEEEecCCcccc--ccCCCCccCceEEEecCCc
Confidence 32211111 11111112 2233346789999988855 555445444454 3322211 1111 1344555555445
Q ss_pred EEEEeeCCCeEE
Q 047325 298 LVFSGSADKTIC 309 (368)
Q Consensus 298 ~l~~~~~dg~i~ 309 (368)
.++....+|.+.
T Consensus 552 ~iyv~~~~g~~~ 563 (591)
T PRK13616 552 TVYVTDARAVLQ 563 (591)
T ss_pred eEEEEcCCceEE
Confidence 566666666443
No 381
>PRK13616 lipoprotein LpqB; Provisional
Probab=96.91 E-value=0.15 Score=46.41 Aligned_cols=173 Identities=12% Similarity=0.095 Sum_probs=90.2
Q ss_pred CCEeEEEEcCCCCEEEEEe------CCC--cEEEEEccCCeEEEEeecCCCceEEEEeCCCC-eEEEEcCC---------
Q 047325 155 DAVSCMSLDQDCGLLYTAS------WDR--TFKVWRISDSKCLESVSAHDDAVNSVVSSSEG-LIFTGSAD--------- 216 (368)
Q Consensus 155 ~~v~~~~~~~~~~~l~~~~------~d~--~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~d--------- 216 (368)
..+...+++|+++.++..- .|. .|.+++. .+.......+ .....-.|+|+| .+++....
T Consensus 350 ~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~-gg~~~~lt~g--~~~t~PsWspDG~~lw~v~dg~~~~~v~~~ 426 (591)
T PRK13616 350 GNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPL-GGVAVQVLEG--HSLTRPSWSLDADAVWVVVDGNTVVRVIRD 426 (591)
T ss_pred cCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeC-CCcceeeecC--CCCCCceECCCCCceEEEecCcceEEEecc
Confidence 4577889999999877665 243 4555564 2322222222 236778999996 55555422
Q ss_pred ---CeEEEEEcCCCCCCcccccceeeccccccEEEEEEcCCCCEEEEecCCCcEEE---EeCCCccccc---eeee-ccc
Q 047325 217 ---GTVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSSSRSIVYCGSSDGLVNF---WEREKQLSHG---GVLK-GHK 286 (368)
Q Consensus 217 ---g~i~i~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i---~d~~~~~~~~---~~~~-~~~ 286 (368)
+.+.+.+++.+. ... .....|..+.|+|||..++... +|.|++ -....+.... ..+. .-.
T Consensus 427 ~~~gql~~~~vd~ge-------~~~--~~~g~Issl~wSpDG~RiA~i~-~g~v~Va~Vvr~~~G~~~l~~~~~l~~~l~ 496 (591)
T PRK13616 427 PATGQLARTPVDASA-------VAS--RVPGPISELQLSRDGVRAAMII-GGKVYLAVVEQTEDGQYALTNPREVGPGLG 496 (591)
T ss_pred CCCceEEEEeccCch-------hhh--ccCCCcCeEEECCCCCEEEEEE-CCEEEEEEEEeCCCCceeecccEEeecccC
Confidence 223333332210 111 2345799999999999888765 477777 3333332111 0011 111
Q ss_pred eEEEE--EEeCCCEEEEeeCCCeEEEEec--CCCceeeeEeeeccccCeeEEEEecCCee
Q 047325 287 LAVLC--LAAAGKLVFSGSADKTICVWRR--DGAIHTCLSVLTGHTGPVKCLAVEEDRDS 342 (368)
Q Consensus 287 ~~~~~--~~~~~~~l~~~~~dg~i~iw~~--~~~~~~~~~~~~~h~~~v~~l~~~~~~~~ 342 (368)
..+.. +..++.+ +++..++.-.+|.+ +..... ...-.....++.+|+=+++..+
T Consensus 497 ~~~~~l~W~~~~~L-~V~~~~~~~~v~~v~vDG~~~~-~~~~~n~~~~v~~vaa~~~~iy 554 (591)
T PRK13616 497 DTAVSLDWRTGDSL-VVGRSDPEHPVWYVNLDGSNSD-ALPSRNLSAPVVAVAASPSTVY 554 (591)
T ss_pred CccccceEecCCEE-EEEecCCCCceEEEecCCcccc-ccCCCCccCceEEEecCCceEE
Confidence 11233 4445554 45555555555654 332111 1011113567888888875433
No 382
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=96.85 E-value=0.2 Score=41.21 Aligned_cols=155 Identities=11% Similarity=0.111 Sum_probs=74.5
Q ss_pred cCCCEeEEEEcCCCCEEEEEeCCCcEEEEEccCCeEEEEeecCCCceEEEEeCCCCeEEEEcCCCeEEEEEcCCCCCCcc
Q 047325 153 HSDAVSCMSLDQDCGLLYTASWDRTFKVWRISDSKCLESVSAHDDAVNSVVSSSEGLIFTGSADGTVKVWKREQHGKGTK 232 (368)
Q Consensus 153 ~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~ 232 (368)
-...+..+...+++.+++++.......-||.-...-...-+.....|..+.|.|++.|......|.|+.=+..... ..
T Consensus 143 ~~gs~~~~~r~~dG~~vavs~~G~~~~s~~~G~~~w~~~~r~~~~riq~~gf~~~~~lw~~~~Gg~~~~s~~~~~~--~~ 220 (302)
T PF14870_consen 143 TSGSINDITRSSDGRYVAVSSRGNFYSSWDPGQTTWQPHNRNSSRRIQSMGFSPDGNLWMLARGGQIQFSDDPDDG--ET 220 (302)
T ss_dssp ----EEEEEE-TTS-EEEEETTSSEEEEE-TT-SS-EEEE--SSS-EEEEEE-TTS-EEEEETTTEEEEEE-TTEE--EE
T ss_pred CcceeEeEEECCCCcEEEEECcccEEEEecCCCccceEEccCccceehhceecCCCCEEEEeCCcEEEEccCCCCc--cc
Confidence 3456888888999998888876555667876432222222334678999999999955556689999888722111 01
Q ss_pred cc-cceeeccccccEEEEEEcCCCCEEEEecCCCcEEEEeCCCccccceeee--ccceEEEEEEe-CCCEEEEeeCCCeE
Q 047325 233 HS-LAQTLLKQECAVTALVVSSSRSIVYCGSSDGLVNFWEREKQLSHGGVLK--GHKLAVLCLAA-AGKLVFSGSADKTI 308 (368)
Q Consensus 233 ~~-~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~--~~~~~~~~~~~-~~~~l~~~~~dg~i 308 (368)
.. ...........+..++|.+++...++|+. |.+.. ....++.-..... .-....+.+.+ +.+.-.+-+.+|.|
T Consensus 221 w~~~~~~~~~~~~~~ld~a~~~~~~~wa~gg~-G~l~~-S~DgGktW~~~~~~~~~~~n~~~i~f~~~~~gf~lG~~G~l 298 (302)
T PF14870_consen 221 WSEPIIPIKTNGYGILDLAYRPPNEIWAVGGS-GTLLV-STDGGKTWQKDRVGENVPSNLYRIVFVNPDKGFVLGQDGVL 298 (302)
T ss_dssp E---B-TTSS--S-EEEEEESSSS-EEEEEST-T-EEE-ESSTTSS-EE-GGGTTSSS---EEEEEETTEEEEE-STTEE
T ss_pred cccccCCcccCceeeEEEEecCCCCEEEEeCC-ccEEE-eCCCCccceECccccCCCCceEEEEEcCCCceEEECCCcEE
Confidence 00 11112223445899999998777776654 44433 3333322211111 11222333332 33444445678877
Q ss_pred EEE
Q 047325 309 CVW 311 (368)
Q Consensus 309 ~iw 311 (368)
.-|
T Consensus 299 l~~ 301 (302)
T PF14870_consen 299 LRY 301 (302)
T ss_dssp EEE
T ss_pred EEe
Confidence 655
No 383
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=96.84 E-value=0.27 Score=42.45 Aligned_cols=147 Identities=14% Similarity=0.113 Sum_probs=81.5
Q ss_pred CEEEEccCCCcEEEEcCCcceec------ccCCCCCeeEEEEe------CCEEEEEeCCCeEEEEeecCCCccccccCCc
Q 047325 55 DLLYTGSDSKNIRVWKNLKEFCG------FKASSGLVKAIVIS------GEKIFTGHQDGKIRVWKISPKNQSVHKRAGT 122 (368)
Q Consensus 55 ~~l~s~~~dg~i~iw~~~~~~~~------~~~~~~~v~~~~~~------~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~ 122 (368)
+.+++||..|.+||++....... -..-..+|..+... ....++.-.-..+.||.+....... ..+
T Consensus 38 d~IivGS~~G~LrIy~P~~~~~~~~~lllE~~l~~PILqv~~G~F~s~~~~~~LaVLhP~kl~vY~v~~~~g~~--~~g- 114 (418)
T PF14727_consen 38 DKIIVGSYSGILRIYDPSGNEFQPEDLLLETQLKDPILQVECGKFVSGSEDLQLAVLHPRKLSVYSVSLVDGTV--EHG- 114 (418)
T ss_pred cEEEEeccccEEEEEccCCCCCCCccEEEEEecCCcEEEEEeccccCCCCcceEEEecCCEEEEEEEEecCCCc--ccC-
Confidence 49999999999999997532111 11234577777653 2233333556678888873222110 000
Q ss_pred cccceeeeeccCCCCceeEecccceeeeeecCC--CEeEEEEcC----C-CCEEEEEeCCCcEEEEEccCCeEEEEeecC
Q 047325 123 LPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSD--AVSCMSLDQ----D-CGLLYTASWDRTFKVWRISDSKCLESVSAH 195 (368)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~v~~~~~~~----~-~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~ 195 (368)
.... ......|.- ....+..-| . ..++.+-+.||.+.+++-+.......+..
T Consensus 115 ---------------~~~~-----L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~f~~~lp~- 173 (418)
T PF14727_consen 115 ---------------NQYQ-----LELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFAFSRFLPD- 173 (418)
T ss_pred ---------------cEEE-----EEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEEEEEEcCC-
Confidence 0000 111111221 122222222 2 45788889999999999766554444443
Q ss_pred CCceEEEEeCCCC-eEEEEcCCCeEEEEEcC
Q 047325 196 DDAVNSVVSSSEG-LIFTGSADGTVKVWKRE 225 (368)
Q Consensus 196 ~~~v~~~~~~~~~-~l~~~~~dg~i~i~d~~ 225 (368)
---...+.+.+.. .+++++.+..+..|...
T Consensus 174 ~llPgPl~Y~~~tDsfvt~sss~~l~~Yky~ 204 (418)
T PF14727_consen 174 FLLPGPLCYCPRTDSFVTASSSWTLECYKYQ 204 (418)
T ss_pred CCCCcCeEEeecCCEEEEecCceeEEEecHH
Confidence 1112234555555 88899999999988763
No 384
>PHA03098 kelch-like protein; Provisional
Probab=96.82 E-value=0.17 Score=46.11 Aligned_cols=64 Identities=11% Similarity=0.155 Sum_probs=32.8
Q ss_pred EEEecCCEEEEccCCC------cEEEEcCCccee----cccCCCCCeeEEEEeCCEEEEEeCCC-----eEEEEeecCC
Q 047325 49 SLAASKDLLYTGSDSK------NIRVWKNLKEFC----GFKASSGLVKAIVISGEKIFTGHQDG-----KIRVWKISPK 112 (368)
Q Consensus 49 ~~~~~~~~l~s~~~dg------~i~iw~~~~~~~----~~~~~~~~v~~~~~~~~~l~s~~~dg-----~i~vw~~~~~ 112 (368)
++..++.+++.||.++ .+..||..+... ...........+...+...+.|+.++ .+..||..++
T Consensus 290 ~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~R~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~ 368 (534)
T PHA03098 290 SVVLNNVIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPELIYPRKNPGVTVFNNRIYVIGGIYNSISLNTVESWKPGES 368 (534)
T ss_pred EEEECCEEEEECCCcCCCCeeccEEEEeCCCCeeeECCCCCcccccceEEEECCEEEEEeCCCCCEecceEEEEcCCCC
Confidence 3444555777777653 466677653221 11112222333444466667777652 3556666554
No 385
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=96.78 E-value=0.0069 Score=33.83 Aligned_cols=31 Identities=16% Similarity=0.293 Sum_probs=28.2
Q ss_pred cccEEEEEEcCCCCEEEEecCCCcEEEEeCC
Q 047325 243 ECAVTALVVSSSRSIVYCGSSDGLVNFWERE 273 (368)
Q Consensus 243 ~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~ 273 (368)
...|..++|+|...+||.++.+|.|.+|.+.
T Consensus 11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl~ 41 (47)
T PF12894_consen 11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRLN 41 (47)
T ss_pred CCcEEEEEECCCCCEEEEEECCCeEEEEECC
Confidence 4568999999999999999999999999984
No 386
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=96.63 E-value=0.31 Score=40.34 Aligned_cols=153 Identities=12% Similarity=0.158 Sum_probs=87.9
Q ss_pred CEEEEEeCCCcEEEEEcc-CCeEEEEee----cCCCce-EEEEeCCC-CeEEEEcCCCeEEEEEcCCCCCCcccccceee
Q 047325 167 GLLYTASWDRTFKVWRIS-DSKCLESVS----AHDDAV-NSVVSSSE-GLIFTGSADGTVKVWKREQHGKGTKHSLAQTL 239 (368)
Q Consensus 167 ~~l~~~~~d~~i~iwd~~-~~~~~~~~~----~~~~~v-~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~ 239 (368)
..|.+-|.||.+.-..+. .|+...+.. ....++ ..-++... +.++--+.+|.|+--|+..... .....+
T Consensus 148 ~~F~~lC~DGsl~~v~Ld~~Gk~~~~~t~~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~~----~~~~~~ 223 (342)
T PF06433_consen 148 RGFSMLCGDGSLLTVTLDADGKEAQKSTKVFDPDDDPLFEHPAYSRDGGRLYFVSYEGNVYSADLSGDSA----KFGKPW 223 (342)
T ss_dssp TEEEEEETTSCEEEEEETSTSSEEEEEEEESSTTTS-B-S--EEETTTTEEEEEBTTSEEEEEEETTSSE----EEEEEE
T ss_pred CceEEEecCCceEEEEECCCCCEeEeeccccCCCCcccccccceECCCCeEEEEecCCEEEEEeccCCcc----cccCcc
Confidence 457788889999988887 555543221 112222 12233333 3566678899999999875532 111111
Q ss_pred cc----------ccccEEEEEEcCCCCEEEEecC---CC-------cEEEEeCCCccccceeeeccceEEEEEEeCCC-E
Q 047325 240 LK----------QECAVTALVVSSSRSIVYCGSS---DG-------LVNFWEREKQLSHGGVLKGHKLAVLCLAAAGK-L 298 (368)
Q Consensus 240 ~~----------~~~~i~~~~~~~~~~~l~~~~~---dg-------~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 298 (368)
.. ..+.-.-+++++..+.|+.--. ++ .|-++|+.+++...+....+....+.++-+.+ +
T Consensus 224 ~~~t~~e~~~~WrPGG~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l~~~~~Si~Vsqd~~P~ 303 (342)
T PF06433_consen 224 SLLTDAEKADGWRPGGWQLIAYHAASGRLYVLMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPLEHPIDSIAVSQDDKPL 303 (342)
T ss_dssp ESS-HHHHHTTEEE-SSS-EEEETTTTEEEEEEEE--TT-TTS-EEEEEEEETTTTEEEEEEEEEEEESEEEEESSSS-E
T ss_pred cccCccccccCcCCcceeeeeeccccCeEEEEecCCCCCCccCCceEEEEEECCCCeEEEEEeCCCccceEEEccCCCcE
Confidence 10 1233445777776655554221 11 47788888888876666566655566776544 6
Q ss_pred EEEe-eCCCeEEEEecCCCceeeeEeee
Q 047325 299 VFSG-SADKTICVWRRDGAIHTCLSVLT 325 (368)
Q Consensus 299 l~~~-~~dg~i~iw~~~~~~~~~~~~~~ 325 (368)
|++. ..++.+.+||..++ +.+.++.
T Consensus 304 L~~~~~~~~~l~v~D~~tG--k~~~~~~ 329 (342)
T PF06433_consen 304 LYALSAGDGTLDVYDAATG--KLVRSIE 329 (342)
T ss_dssp EEEEETTTTEEEEEETTT----EEEEE-
T ss_pred EEEEcCCCCeEEEEeCcCC--cEEeehh
Confidence 6554 46899999998876 6666654
No 387
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.55 E-value=0.16 Score=43.19 Aligned_cols=140 Identities=10% Similarity=0.018 Sum_probs=87.6
Q ss_pred EEEEeCCCCeEEEEcCCCeEEEEEcCCCCCCcccccceeeccccccEEEEEEcCCCCEEEEecCCCcEEEEeCCCc---c
Q 047325 200 NSVVSSSEGLIFTGSADGTVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSSSRSIVYCGSSDGLVNFWEREKQ---L 276 (368)
Q Consensus 200 ~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~---~ 276 (368)
+.+.|...+..+.+...|.+.-|-....+. ..+.......+++|.++.|++|.+.||.--.+..|.+++.... .
T Consensus 26 ngvFfDDaNkqlfavrSggatgvvvkgpnd---DVpiSfdm~d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l 102 (657)
T KOG2377|consen 26 NGVFFDDANKQLFAVRSGGATGVVVKGPND---DVPISFDMDDKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQL 102 (657)
T ss_pred cceeeccCcceEEEEecCCeeEEEEeCCCC---CCCceeeecCCCceeEEEeccCcceEEEEecCceEEEEecCCCchhh
Confidence 344555444444444455566666554331 1223333445679999999999999999999999999998432 2
Q ss_pred ccceeeeccceEEEEEEe-CCCEEEEeeCCCeEEEEecCCCceeeeEeeeccccCeeEEEEecCCeeee
Q 047325 277 SHGGVLKGHKLAVLCLAA-AGKLVFSGSADKTICVWRRDGAIHTCLSVLTGHTGPVKCLAVEEDRDSSS 344 (368)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~-~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~ 344 (368)
......+.....+..|.| +..-++.-+..| +-+|..... ...++..+.|.-.|+=-.|.++...+.
T Consensus 103 ~~~~~ck~k~~~IlGF~W~~s~e~A~i~~~G-~e~y~v~pe-krslRlVks~~~nvnWy~yc~et~v~L 169 (657)
T KOG2377|consen 103 EYTQECKTKNANILGFCWTSSTEIAFITDQG-IEFYQVLPE-KRSLRLVKSHNLNVNWYMYCPETAVIL 169 (657)
T ss_pred HHHHHhccCcceeEEEEEecCeeEEEEecCC-eEEEEEchh-hhhhhhhhhcccCccEEEEccccceEe
Confidence 222233333455777777 345555555444 777766543 244556677888888889999887543
No 388
>KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification]
Probab=96.41 E-value=0.58 Score=44.34 Aligned_cols=173 Identities=16% Similarity=0.151 Sum_probs=98.8
Q ss_pred cEEEEEccCCeEEEEeecCC----CceEEEEeCCCC---eEEEEc-----------CCCeEEEEEcCCCCCCccccccee
Q 047325 177 TFKVWRISDSKCLESVSAHD----DAVNSVVSSSEG---LIFTGS-----------ADGTVKVWKREQHGKGTKHSLAQT 238 (368)
Q Consensus 177 ~i~iwd~~~~~~~~~~~~~~----~~v~~~~~~~~~---~l~~~~-----------~dg~i~i~d~~~~~~~~~~~~~~~ 238 (368)
.|++.|..+++.+..+.-.. -.+....|+... .++++. .+|.++.|++-..+. ....+.
T Consensus 854 ~I~~~d~~s~~~~~~~~l~~ne~a~~v~~~~fs~~~~~~~~~v~~~~~~~l~~~~~~~g~~ytyk~~~~g~--~lellh- 930 (1205)
T KOG1898|consen 854 SIRVFDPKSGKIICLVELGQNEAAFSVCAVDFSSSEYQPFVAVGVATTEQLDSKSISSGFVYTYKFVRNGD--KLELLH- 930 (1205)
T ss_pred eEEEEcCCCCceEEEEeecCCcchhheeeeeeccCCCceEEEEEeeccccccccccCCCceEEEEEEecCc--eeeeee-
Confidence 37788887777665554222 234555555443 333332 245577777654332 111111
Q ss_pred eccccccEEEEEEcCCCCEEEEecCCCcEEEEeCCCccccceeeec-cceEEEEEEeCCCEEEEeeCCCeEEEEecCCCc
Q 047325 239 LLKQECAVTALVVSSSRSIVYCGSSDGLVNFWEREKQLSHGGVLKG-HKLAVLCLAAAGKLVFSGSADKTICVWRRDGAI 317 (368)
Q Consensus 239 ~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~ 317 (368)
...-.+.+. +..|...++++| ....+++||+.+.+.+...... -+..|..+...+..+++|...-.++++..+...
T Consensus 931 ~T~~~~~v~--Ai~~f~~~~Lag-vG~~l~~YdlG~K~lLRk~e~k~~p~~Is~iqt~~~RI~VgD~qeSV~~~~y~~~~ 1007 (1205)
T KOG1898|consen 931 KTEIPGPVG--AICPFQGRVLAG-VGRFLRLYDLGKKKLLRKCELKFIPNRISSIQTYGARIVVGDIQESVHFVRYRRED 1007 (1205)
T ss_pred ccCCCccce--EEeccCCEEEEe-cccEEEEeeCChHHHHhhhhhccCceEEEEEeecceEEEEeeccceEEEEEEecCC
Confidence 112233444 445555566655 4468999999876655433333 367778888899999999887777776665443
Q ss_pred eeeeEeeecc--ccCeeEEEEecCCeeeecCCcceEEEEEee
Q 047325 318 HTCLSVLTGH--TGPVKCLAVEEDRDSSSSTSSCAQRWIVYS 357 (368)
Q Consensus 318 ~~~~~~~~~h--~~~v~~l~~~~~~~~~~~~~~~~~~w~l~s 357 (368)
.+. ..+... ...|+++.+- |...+|.+|.-+.+|.+-.
T Consensus 1008 n~l-~~fadD~~pR~Vt~~~~l-D~~tvagaDrfGNi~~vR~ 1047 (1205)
T KOG1898|consen 1008 NQL-IVFADDPVPRHVTALELL-DYDTVAGADRFGNIAVVRI 1047 (1205)
T ss_pred CeE-EEEeCCCccceeeEEEEe-cCCceeeccccCcEEEEEC
Confidence 233 333222 2346666554 4556788888888887643
No 389
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=96.38 E-value=0.92 Score=42.84 Aligned_cols=213 Identities=9% Similarity=0.057 Sum_probs=111.9
Q ss_pred CCEEEEEeCCCeEEEEeecCCCccccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeE-E--EEcCCCCE
Q 047325 92 GEKIFTGHQDGKIRVWKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSC-M--SLDQDCGL 168 (368)
Q Consensus 92 ~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~-~--~~~~~~~~ 168 (368)
++.|+.++.++.|.-.|..+++................ ...+.-...+......... . .-...+..
T Consensus 194 gg~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~-----------~~~cRGvay~~~p~~~~~~~~~~~p~~~~~r 262 (764)
T TIGR03074 194 GDTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQ-----------HQTCRGVSYYDAPAAAAGPAAPAAPADCARR 262 (764)
T ss_pred CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccc-----------cccccceEEecCCcccccccccccccccCCE
Confidence 78888899999999999999987766554322110000 0000000000000000000 0 00013457
Q ss_pred EEEEeCCCcEEEEEccCCeEEEEeecCCCceE-------------EEEeCC---CCeEEEEcC----------CCeEEEE
Q 047325 169 LYTASWDRTFKVWRISDSKCLESVSAHDDAVN-------------SVVSSS---EGLIFTGSA----------DGTVKVW 222 (368)
Q Consensus 169 l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~-------------~~~~~~---~~~l~~~~~----------dg~i~i~ 222 (368)
++.++.|+.+.-.|.++|+.+..+.. ++.+. .+.-.| ++.+++|+. +|.|+-+
T Consensus 263 V~~~T~Dg~LiALDA~TGk~~W~fg~-~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~ 341 (764)
T TIGR03074 263 IILPTSDARLIALDADTGKLCEDFGN-NGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAF 341 (764)
T ss_pred EEEecCCCeEEEEECCCCCEEEEecC-CCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEEE
Confidence 88888999999999999998876642 11110 111112 346666643 6889999
Q ss_pred EcCCCCCCcccccce-----------eec-cccccEEEEEEcCCCCEEEEecC------------------CCcEEEEeC
Q 047325 223 KREQHGKGTKHSLAQ-----------TLL-KQECAVTALVVSSSRSIVYCGSS------------------DGLVNFWER 272 (368)
Q Consensus 223 d~~~~~~~~~~~~~~-----------~~~-~~~~~i~~~~~~~~~~~l~~~~~------------------dg~i~i~d~ 272 (368)
|.++++......... ... +....-...+++++...++.+.. .+.|.-.|.
T Consensus 342 Da~TGkl~W~~~~g~p~~~~~~~~g~~~~~gg~n~W~~~s~D~~~glvy~ptGn~~pd~~g~~r~~~~n~y~~slvALD~ 421 (764)
T TIGR03074 342 DVNTGALVWAWDPGNPDPTAPPAPGETYTRNTPNSWSVASYDEKLGLVYLPMGNQTPDQWGGDRTPADEKYSSSLVALDA 421 (764)
T ss_pred ECCCCcEeeEEecCCCCcccCCCCCCEeccCCCCccCceEEcCCCCeEEEeCCCccccccCCccccCcccccceEEEEeC
Confidence 998876432221100 000 00111123455555444444321 234555666
Q ss_pred CCccccceeeecc-c---------eEEEEEEe-CCC---EEEEeeCCCeEEEEecCCC
Q 047325 273 EKQLSHGGVLKGH-K---------LAVLCLAA-AGK---LVFSGSADKTICVWRRDGA 316 (368)
Q Consensus 273 ~~~~~~~~~~~~~-~---------~~~~~~~~-~~~---~l~~~~~dg~i~iw~~~~~ 316 (368)
++++........| . .....+.. +++ .++.++.+|.+.+.|-+++
T Consensus 422 ~TGk~~W~~Q~~~hD~WD~D~~~~p~L~d~~~~~G~~~~~v~~~~K~G~~~vlDr~tG 479 (764)
T TIGR03074 422 TTGKERWVFQTVHHDLWDMDVPAQPSLVDLPDADGTTVPALVAPTKQGQIYVLDRRTG 479 (764)
T ss_pred CCCceEEEecccCCccccccccCCceEEeeecCCCcEeeEEEEECCCCEEEEEECCCC
Confidence 7766554333322 1 12233443 553 8999999999999998776
No 390
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=96.33 E-value=0.001 Score=60.42 Aligned_cols=71 Identities=17% Similarity=0.222 Sum_probs=43.8
Q ss_pred CCCEEEEEeCCCcEEEEEccCCeEEEEeecCCCceEEEEeCCCCeEEEEcCCCeEEEEEcCCCCCCcccccceeeccccc
Q 047325 165 DCGLLYTASWDRTFKVWRISDSKCLESVSAHDDAVNSVVSSSEGLIFTGSADGTVKVWKREQHGKGTKHSLAQTLLKQEC 244 (368)
Q Consensus 165 ~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~ 244 (368)
+.-++..+..++.|++....+... ..+.+|...+..+++-..|++...+
T Consensus 194 ~~~~ic~~~~~~~i~lL~~~ra~~-~l~rsHs~~~~d~a~~~~g~~~l~~------------------------------ 242 (1283)
T KOG1916|consen 194 NKVYICYGLKGGEIRLLNINRALR-SLFRSHSQRVTDMAFFAEGVLKLAS------------------------------ 242 (1283)
T ss_pred ccceeeeccCCCceeEeeechHHH-HHHHhcCCCcccHHHHhhchhhhee------------------------------
Confidence 555666667778888776654322 4455577777777665555221111
Q ss_pred cEEEEEEcCCCCEEEEecCCCcEEEEeC
Q 047325 245 AVTALVVSSSRSIVYCGSSDGLVNFWER 272 (368)
Q Consensus 245 ~i~~~~~~~~~~~l~~~~~dg~i~i~d~ 272 (368)
.+|||..++.++.||.++.|.+
T Consensus 243 ------lSpDGtv~a~a~~dG~v~f~Qi 264 (1283)
T KOG1916|consen 243 ------LSPDGTVFAWAISDGSVGFYQI 264 (1283)
T ss_pred ------eCCCCcEEEEeecCCccceeee
Confidence 5677777777777777766654
No 391
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=96.23 E-value=0.0092 Score=54.58 Aligned_cols=158 Identities=12% Similarity=0.146 Sum_probs=90.2
Q ss_pred CcEEEEEccCCeE-EEEeecCCCceEEEEeCCCC--eEEEEcCCCeEEEEEcCCCCCC-cccccceeeccccccEEEEEE
Q 047325 176 RTFKVWRISDSKC-LESVSAHDDAVNSVVSSSEG--LIFTGSADGTVKVWKREQHGKG-TKHSLAQTLLKQECAVTALVV 251 (368)
Q Consensus 176 ~~i~iwd~~~~~~-~~~~~~~~~~v~~~~~~~~~--~l~~~~~dg~i~i~d~~~~~~~-~~~~~~~~~~~~~~~i~~~~~ 251 (368)
+-+++-+..+... -..+++..+.+-.+.|.... .+. -.-|.+.+||+..-... .....+.........+.-+.|
T Consensus 111 ~~vrvaN~~~sm~~~~l~kgf~G~v~dl~fah~~~pk~~--~~vg~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~~~V~w 188 (1283)
T KOG1916|consen 111 NGVRVANQEPSMRHNELAKGFPGGVGDLQFAHTKCPKGR--RLVGELFVYDVDVLQGEIQPQLEVTPITPYGSDPQLVSW 188 (1283)
T ss_pred hhhhhccCcchhHHHHHHhcCCCCcccccccccCChHHH--HHhhhhheeehHhhccccccceEEeecCcCCCCcceeee
Confidence 4455555433221 12234556667777764433 222 34477889988642211 111112222233344455555
Q ss_pred cC---CCCEEEEecCCCcEEEEeCCCccccceeeeccceE-------------EEEEEeCCCEEEEeeCCCeEEEEecC-
Q 047325 252 SS---SRSIVYCGSSDGLVNFWEREKQLSHGGVLKGHKLA-------------VLCLAAAGKLVFSGSADKTICVWRRD- 314 (368)
Q Consensus 252 ~~---~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~l~~~~~dg~i~iw~~~- 314 (368)
.| +..++.++-.++.+++....+... ..+.+|... +..++|||..++.+..||.+++|.+.
T Consensus 189 cp~~~~~~~ic~~~~~~~i~lL~~~ra~~--~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~dG~v~f~Qiyi 266 (1283)
T KOG1916|consen 189 CPIAVNKVYICYGLKGGEIRLLNINRALR--SLFRSHSQRVTDMAFFAEGVLKLASLSPDGTVFAWAISDGSVGFYQIYI 266 (1283)
T ss_pred cccccccceeeeccCCCceeEeeechHHH--HHHHhcCCCcccHHHHhhchhhheeeCCCCcEEEEeecCCccceeeeee
Confidence 54 667888888889998877654322 233334432 35688999999999999999999763
Q ss_pred --CCceeeeEeeecccc-CeeEEEEe
Q 047325 315 --GAIHTCLSVLTGHTG-PVKCLAVE 337 (368)
Q Consensus 315 --~~~~~~~~~~~~h~~-~v~~l~~~ 337 (368)
.....++..++.|.+ +-.|.-|.
T Consensus 267 ~g~~~~rclhewkphd~~p~vC~lc~ 292 (1283)
T KOG1916|consen 267 TGKIVHRCLHEWKPHDKHPRVCWLCH 292 (1283)
T ss_pred eccccHhhhhccCCCCCCCceeeeec
Confidence 223456777788874 43333343
No 392
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.22 E-value=0.49 Score=38.07 Aligned_cols=189 Identities=11% Similarity=0.131 Sum_probs=114.6
Q ss_pred cCCCEeEEEEcCCCCEEEEEeCCCcEEEEEccCCeEEEEeecC-CCceEEEEeCCCC-eEEEEcCCCeEEEEEcCCCCCC
Q 047325 153 HSDAVSCMSLDQDCGLLYTASWDRTFKVWRISDSKCLESVSAH-DDAVNSVVSSSEG-LIFTGSADGTVKVWKREQHGKG 230 (368)
Q Consensus 153 ~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~-~~~v~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~ 230 (368)
-...+.++.|+|+.+.|++......-.++=..+|+.+.+++-. -.....+.+..++ +.++--.++.+.++.+......
T Consensus 84 ~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig~n~fvi~dER~~~l~~~~vd~~t~~ 163 (316)
T COG3204 84 ETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIGGNQFVIVDERDRALYLFTVDADTTV 163 (316)
T ss_pred ccccccceeeCCCcceEEEecCCCceEEEEecCCceEEEecccccCChhHeEEecCCEEEEEehhcceEEEEEEcCCccE
Confidence 4455999999999999988887777777766788988887632 1223456777777 4444455888888887655331
Q ss_pred cccc----cceeeccccccEEEEEEcCCCCEEEEecCCCcEEEEeCCCcccc--ceeeeccc----eEE---EEEEe---
Q 047325 231 TKHS----LAQTLLKQECAVTALVVSSSRSIVYCGSSDGLVNFWEREKQLSH--GGVLKGHK----LAV---LCLAA--- 294 (368)
Q Consensus 231 ~~~~----~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~--~~~~~~~~----~~~---~~~~~--- 294 (368)
.... .+............++|+|....|+.+-+-.-+.||........ ......+. ..+ ..+.+
T Consensus 164 ~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~DvSgl~~~~~ 243 (316)
T COG3204 164 ISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSLSVHASLDPTADRDLFVLDVSGLEFNAI 243 (316)
T ss_pred EeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCCcccccccccCcccccceEeeccccceecCC
Confidence 1111 11112222567889999999999998888887888776532211 01111111 112 22333
Q ss_pred CCCEEEEeeCCCeEEEEecCCCceeeeEeeecc------ccCeeEEEEecCCe
Q 047325 295 AGKLVFSGSADKTICVWRRDGAIHTCLSVLTGH------TGPVKCLAVEEDRD 341 (368)
Q Consensus 295 ~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h------~~~v~~l~~~~~~~ 341 (368)
.+.+|+-+.+++.+.-.|........+.-..+. -..-..|+..++|.
T Consensus 244 ~~~LLVLS~ESr~l~Evd~~G~~~~~lsL~~g~~gL~~dipqaEGiamDd~g~ 296 (316)
T COG3204 244 TNSLLVLSDESRRLLEVDLSGEVIELLSLTKGNHGLSSDIPQAEGIAMDDDGN 296 (316)
T ss_pred CCcEEEEecCCceEEEEecCCCeeeeEEeccCCCCCcccCCCcceeEECCCCC
Confidence 367788888888888887765422222222221 12345677777776
No 393
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=96.21 E-value=0.77 Score=40.29 Aligned_cols=181 Identities=14% Similarity=0.089 Sum_probs=93.3
Q ss_pred EeEEEEcCCCCEEEEE-eCCC----cEEEEEccCCeEEEEe-ecCCCceEEEEeCCCC--eEEEEcCC----------Ce
Q 047325 157 VSCMSLDQDCGLLYTA-SWDR----TFKVWRISDSKCLESV-SAHDDAVNSVVSSSEG--LIFTGSAD----------GT 218 (368)
Q Consensus 157 v~~~~~~~~~~~l~~~-~~d~----~i~iwd~~~~~~~~~~-~~~~~~v~~~~~~~~~--~l~~~~~d----------g~ 218 (368)
+....++|++++++.+ +..| .|+++|+.+++.+... ... ....+.|.+++ .+.+...+ ..
T Consensus 126 ~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~~--~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~ 203 (414)
T PF02897_consen 126 LGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIENP--KFSSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQ 203 (414)
T ss_dssp EEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEEE--ESEEEEECTTSSEEEEEECSTTTSS-CCGCCEE
T ss_pred eeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCccccc--ccceEEEeCCCCEEEEEEeCcccccccCCCCcE
Confidence 3467889999988766 3444 5999999999876532 221 22339999997 44444332 23
Q ss_pred EEEEEcCCCCCCcccccceeeccccccEEEEEEcCCCCEEEEecCC----CcEEEEeCCCc----cccceeeeccceEEE
Q 047325 219 VKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSSSRSIVYCGSSD----GLVNFWEREKQ----LSHGGVLKGHKLAVL 290 (368)
Q Consensus 219 i~i~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d----g~i~i~d~~~~----~~~~~~~~~~~~~~~ 290 (368)
|+.|.+.+... ....+............+..++++++|+..... ..+++.|+... ...............
T Consensus 204 v~~~~~gt~~~--~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~~~~~~~~ 281 (414)
T PF02897_consen 204 VYRHKLGTPQS--EDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSPREDGVEY 281 (414)
T ss_dssp EEEEETTS-GG--G-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEESSSS-EE
T ss_pred EEEEECCCChH--hCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeCCCCceEE
Confidence 77777765421 111122222222226678899999987764322 35778888764 222222222223333
Q ss_pred EEEeCCC-EEEEee---CCCeEEEEecCCCcee-eeEeeecccc--CeeEEEEecCCe
Q 047325 291 CLAAAGK-LVFSGS---ADKTICVWRRDGAIHT-CLSVLTGHTG--PVKCLAVEEDRD 341 (368)
Q Consensus 291 ~~~~~~~-~l~~~~---~dg~i~iw~~~~~~~~-~~~~~~~h~~--~v~~l~~~~~~~ 341 (368)
.+...+. +++... .++.|...++...... ....+..+.. .+..+....+..
T Consensus 282 ~v~~~~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~L 339 (414)
T PF02897_consen 282 YVDHHGDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSLEDVSLFKDYL 339 (414)
T ss_dssp EEEEETTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEEEEEEEEETTEE
T ss_pred EEEccCCEEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCceeEEEEEEECCEE
Confidence 3333344 433332 2466777777655321 1224444544 466666554443
No 394
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=96.11 E-value=0.31 Score=41.65 Aligned_cols=145 Identities=12% Similarity=0.174 Sum_probs=70.3
Q ss_pred eEEEEcCCCCEEEEEe--------------------CCCcEEEEEccCCeEEEEeecCCC--ceEEEEeCC--CC--eEE
Q 047325 158 SCMSLDQDCGLLYTAS--------------------WDRTFKVWRISDSKCLESVSAHDD--AVNSVVSSS--EG--LIF 211 (368)
Q Consensus 158 ~~~~~~~~~~~l~~~~--------------------~d~~i~iwd~~~~~~~~~~~~~~~--~v~~~~~~~--~~--~l~ 211 (368)
..+-+.|..+.+++.. ...++.+||+.+.+.++++.-... ....+.|.. +. -++
T Consensus 184 YDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q~idLg~~g~~pLEvRflH~P~~~~gFv 263 (461)
T PF05694_consen 184 YDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKLLQTIDLGEEGQMPLEVRFLHDPDANYGFV 263 (461)
T ss_dssp --EEEETTTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEEEEEEES-TTEEEEEEEEE-SSTT--EEEE
T ss_pred CCeEEcCCCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCcEeeEEecCCCCCceEEEEecCCCCccceEE
Confidence 4455666666666653 245899999999999999875432 344565543 33 334
Q ss_pred EEcCCCeEEEEEcCCCCCCcccccceeec-----------------cccccEEEEEEcCCCCEEEEec-CCCcEEEEeCC
Q 047325 212 TGSADGTVKVWKREQHGKGTKHSLAQTLL-----------------KQECAVTALVVSSSRSIVYCGS-SDGLVNFWERE 273 (368)
Q Consensus 212 ~~~~dg~i~i~d~~~~~~~~~~~~~~~~~-----------------~~~~~i~~~~~~~~~~~l~~~~-~dg~i~i~d~~ 273 (368)
.+.-..+|..|--...+. .....+..+. .-..-|+.|..|.|.++|..++ .+|.|+.||+.
T Consensus 264 g~aLss~i~~~~k~~~g~-W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~LitDI~iSlDDrfLYvs~W~~GdvrqYDIS 342 (461)
T PF05694_consen 264 GCALSSSIWRFYKDDDGE-WAAEKVIDIPAKKVEGWILPEMLKPFGAVPPLITDILISLDDRFLYVSNWLHGDVRQYDIS 342 (461)
T ss_dssp EEE--EEEEEEEE-ETTE-EEEEEEEEE--EE--SS---GGGGGG-EE------EEE-TTS-EEEEEETTTTEEEEEE-S
T ss_pred EEeccceEEEEEEcCCCC-eeeeEEEECCCcccCcccccccccccccCCCceEeEEEccCCCEEEEEcccCCcEEEEecC
Confidence 344455555554422211 1111111111 1134578999999999887655 78999999998
Q ss_pred Cccccceee---ecc-----------------ceEEEEEEeCCCEEEEee
Q 047325 274 KQLSHGGVL---KGH-----------------KLAVLCLAAAGKLVFSGS 303 (368)
Q Consensus 274 ~~~~~~~~~---~~~-----------------~~~~~~~~~~~~~l~~~~ 303 (368)
....++..- .+- ....+.++.||+.|+...
T Consensus 343 DP~~Pkl~gqv~lGG~~~~~~~~~v~g~~l~GgPqMvqlS~DGkRlYvTn 392 (461)
T PF05694_consen 343 DPFNPKLVGQVFLGGSIRKGDHPVVKGKRLRGGPQMVQLSLDGKRLYVTN 392 (461)
T ss_dssp STTS-EEEEEEE-BTTTT-B--TTS------S----EEE-TTSSEEEEE-
T ss_pred CCCCCcEEeEEEECcEeccCCCccccccccCCCCCeEEEccCCeEEEEEe
Confidence 654432211 110 113467888888777653
No 395
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=95.99 E-value=0.53 Score=36.49 Aligned_cols=141 Identities=10% Similarity=0.060 Sum_probs=76.6
Q ss_pred CCCEeEEEEcCCCCEEEEEeCCCcEEEEEccCCeEEEEeecCC--------CceEEEEeCCCC--eEEEEcCCCeEEEEE
Q 047325 154 SDAVSCMSLDQDCGLLYTASWDRTFKVWRISDSKCLESVSAHD--------DAVNSVVSSSEG--LIFTGSADGTVKVWK 223 (368)
Q Consensus 154 ~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~--------~~v~~~~~~~~~--~l~~~~~dg~i~i~d 223 (368)
..+.+.-..+|+|++++-.-.|-. -.+....+....-+.+|. .--+.++|..+. ..++-+.+-+|.-||
T Consensus 108 knR~NDgkvdP~Gryy~GtMad~~-~~le~~~g~Ly~~~~~h~v~~i~~~v~IsNgl~Wd~d~K~fY~iDsln~~V~a~d 186 (310)
T KOG4499|consen 108 KNRLNDGKVDPDGRYYGGTMADFG-DDLEPIGGELYSWLAGHQVELIWNCVGISNGLAWDSDAKKFYYIDSLNYEVDAYD 186 (310)
T ss_pred hcccccCccCCCCceeeeeecccc-ccccccccEEEEeccCCCceeeehhccCCccccccccCcEEEEEccCceEEeeee
Confidence 345566678899987432222211 122222233222222332 233567888766 555667778887788
Q ss_pred cC--CCCCCcccccceeecc----ccccEEEEEEcCCCCEEEEecCCCcEEEEeCCCccccceeeeccceEEEEEEeCCC
Q 047325 224 RE--QHGKGTKHSLAQTLLK----QECAVTALVVSSSRSIVYCGSSDGLVNFWEREKQLSHGGVLKGHKLAVLCLAAAGK 297 (368)
Q Consensus 224 ~~--~~~~~~~~~~~~~~~~----~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (368)
.+ ++.. .....+..+.. ..-..-.++...+|++.++.-..++|...|..+++.+..... ....+.+.++-|.
T Consensus 187 yd~~tG~~-snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng~~V~~~dp~tGK~L~eikl-Pt~qitsccFgGk 264 (310)
T KOG4499|consen 187 YDCPTGDL-SNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNGGTVQKVDPTTGKILLEIKL-PTPQITSCCFGGK 264 (310)
T ss_pred cCCCcccc-cCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEecCcEEEEECCCCCcEEEEEEc-CCCceEEEEecCC
Confidence 43 3322 11111111111 111122345566888888888899999999999888754443 3556666666543
No 396
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=95.97 E-value=0.49 Score=43.04 Aligned_cols=108 Identities=12% Similarity=0.105 Sum_probs=68.7
Q ss_pred cEEEEEEcCCCCEEEEecCCCcEEEEeCCCccccceeeeccceEEEEEE----eCCCEEEEeeCCCeEEEEecC------
Q 047325 245 AVTALVVSSSRSIVYCGSSDGLVNFWEREKQLSHGGVLKGHKLAVLCLA----AAGKLVFSGSADKTICVWRRD------ 314 (368)
Q Consensus 245 ~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~----~~~~~l~~~~~dg~i~iw~~~------ 314 (368)
.+.-+.-+.-++..++.+....+.|||.+...............|..+. |+++.+++.|-.+.|.+|--.
T Consensus 31 ~~~li~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy~~ 110 (631)
T PF12234_consen 31 NPSLISGSSIKKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDYTN 110 (631)
T ss_pred CcceEeecccCcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhhhc
Confidence 3444444555555555555568999999877644333334456666665 478888888889999998431
Q ss_pred -CCceeeeEee--eccc-cCeeEEEEecCCeeeecCCcceEE
Q 047325 315 -GAIHTCLSVL--TGHT-GPVKCLAVEEDRDSSSSTSSCAQR 352 (368)
Q Consensus 315 -~~~~~~~~~~--~~h~-~~v~~l~~~~~~~~~~~~~~~~~~ 352 (368)
.+...++..+ ..|+ .+|.+..|.++|..++.+++...+
T Consensus 111 ~~p~w~~i~~i~i~~~T~h~Igds~Wl~~G~LvV~sGNqlfv 152 (631)
T PF12234_consen 111 KGPSWAPIRKIDISSHTPHPIGDSIWLKDGTLVVGSGNQLFV 152 (631)
T ss_pred CCcccceeEEEEeecCCCCCccceeEecCCeEEEEeCCEEEE
Confidence 2222333333 3444 579999999999987766655443
No 397
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=95.96 E-value=0.26 Score=43.55 Aligned_cols=115 Identities=10% Similarity=0.102 Sum_probs=70.6
Q ss_pred cCCCEeEEEEcCC----CCEEEEEeCCCcEEEEEcc-----CCeEEEEeecC-C----CceEEEEeCCCC-eEEEEcCCC
Q 047325 153 HSDAVSCMSLDQD----CGLLYTASWDRTFKVWRIS-----DSKCLESVSAH-D----DAVNSVVSSSEG-LIFTGSADG 217 (368)
Q Consensus 153 ~~~~v~~~~~~~~----~~~l~~~~~d~~i~iwd~~-----~~~~~~~~~~~-~----~~v~~~~~~~~~-~l~~~~~dg 217 (368)
.-+.|..+.|.|- ...+++......|.+|.+. +++.+.....+ . ---..+.|+|.. .|++-....
T Consensus 55 qFEhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~d 134 (671)
T PF15390_consen 55 QFEHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCPSTTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARD 134 (671)
T ss_pred ccceeeeeeecCcccCCCCceEEEeccceEEEEEeccCccccccceeeeeeeccCCcccCCCcccccCCCceEEEEecCc
Confidence 4456889999883 3456666677899999885 22222211111 1 112456799988 554444444
Q ss_pred eEEEEEcCCCCCCcccccceeeccccccEEEEEEcCCCCEEEEecCC-CcEEEEeC
Q 047325 218 TVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSSSRSIVYCGSSD-GLVNFWER 272 (368)
Q Consensus 218 ~i~i~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d-g~i~i~d~ 272 (368)
.-.+++++.... .++.-....+.|.|.+|.+||+.|+.+-.. =.-++||-
T Consensus 135 vSV~~sV~~d~s-----rVkaDi~~~G~IhCACWT~DG~RLVVAvGSsLHSyiWd~ 185 (671)
T PF15390_consen 135 VSVLPSVHCDSS-----RVKADIKTSGLIHCACWTKDGQRLVVAVGSSLHSYIWDS 185 (671)
T ss_pred eeEeeeeeeCCc-----eEEEeccCCceEEEEEecCcCCEEEEEeCCeEEEEEecC
Confidence 445666664432 333344667889999999999987765433 24567874
No 398
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=95.90 E-value=0.91 Score=38.48 Aligned_cols=163 Identities=10% Similarity=0.081 Sum_probs=72.6
Q ss_pred CcEEEEEccCCeEEEEeecCCCceEEEEeCCCC-eEEEEcC----CC-eEEEEEcCCCCCCcccccceeeccccccEEEE
Q 047325 176 RTFKVWRISDSKCLESVSAHDDAVNSVVSSSEG-LIFTGSA----DG-TVKVWKREQHGKGTKHSLAQTLLKQECAVTAL 249 (368)
Q Consensus 176 ~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~----dg-~i~i~d~~~~~~~~~~~~~~~~~~~~~~i~~~ 249 (368)
..|.-.|+.+|+....+. ....+..+.++|.. .+++-+. +. .-+||-++..+... .++.... ....+.-=
T Consensus 168 ~~i~~idl~tG~~~~v~~-~~~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~--~~v~~~~-~~e~~gHE 243 (386)
T PF14583_consen 168 CRIFTIDLKTGERKVVFE-DTDWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGSNV--KKVHRRM-EGESVGHE 243 (386)
T ss_dssp EEEEEEETTT--EEEEEE-ESS-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS-----EESS----TTEEEEEE
T ss_pred ceEEEEECCCCceeEEEe-cCccccCcccCCCCCCEEEEeccCCcceeceEEEEEEcCCCcc--eeeecCC-CCcccccc
Confidence 346666788877665555 45667788888877 3333332 22 23677776544311 1222111 22334444
Q ss_pred EEcCCCCEEEEe-----cCCCcEEEEeCCCccccceeeeccceEEEEEEeCCCEEEEeeCCC----------------eE
Q 047325 250 VVSSSRSIVYCG-----SSDGLVNFWEREKQLSHGGVLKGHKLAVLCLAAAGKLVFSGSADK----------------TI 308 (368)
Q Consensus 250 ~~~~~~~~l~~~-----~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg----------------~i 308 (368)
-|.|+|..|.-- ..+..|.-+|..+..... ........-.-.++|+++++-=+.|. .|
T Consensus 244 fw~~DG~~i~y~~~~~~~~~~~i~~~d~~t~~~~~-~~~~p~~~H~~ss~Dg~L~vGDG~d~p~~v~~~~~~~~~~~p~i 322 (386)
T PF14583_consen 244 FWVPDGSTIWYDSYTPGGQDFWIAGYDPDTGERRR-LMEMPWCSHFMSSPDGKLFVGDGGDAPVDVADAGGYKIENDPWI 322 (386)
T ss_dssp EE-TTSS-EEEEEEETTT--EEEEEE-TTT--EEE-EEEE-SEEEEEE-TTSSEEEEEE-------------------EE
T ss_pred cccCCCCEEEEEeecCCCCceEEEeeCCCCCCceE-EEeCCceeeeEEcCCCCEEEecCCCCCccccccccceecCCcEE
Confidence 688999866542 234456677777654321 12221222233346777766433332 46
Q ss_pred EEEecCCCceeeeEee-------ecccc-CeeEEEEecCCeee
Q 047325 309 CVWRRDGAIHTCLSVL-------TGHTG-PVKCLAVEEDRDSS 343 (368)
Q Consensus 309 ~iw~~~~~~~~~~~~~-------~~h~~-~v~~l~~~~~~~~~ 343 (368)
+++++..+....+... .++.. .=-...|+||++.+
T Consensus 323 ~~~~~~~~~~~~l~~h~~sw~v~~~~~q~~hPhp~FSPDgk~V 365 (386)
T PF14583_consen 323 YLFDVEAGRFRKLARHDTSWKVLDGDRQVTHPHPSFSPDGKWV 365 (386)
T ss_dssp EEEETTTTEEEEEEE-------BTTBSSTT----EE-TTSSEE
T ss_pred EEeccccCceeeeeeccCcceeecCCCccCCCCCccCCCCCEE
Confidence 6777766543333321 11111 12357999999953
No 399
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=95.77 E-value=0.91 Score=39.04 Aligned_cols=147 Identities=10% Similarity=0.112 Sum_probs=77.9
Q ss_pred CCEeEEEEcCCCCEEEEEe-----------CCC-cEEEEEccC--Ce--EEEEeecCCCceEEEEeCCCCeEEEEcCCCe
Q 047325 155 DAVSCMSLDQDCGLLYTAS-----------WDR-TFKVWRISD--SK--CLESVSAHDDAVNSVVSSSEGLIFTGSADGT 218 (368)
Q Consensus 155 ~~v~~~~~~~~~~~l~~~~-----------~d~-~i~iwd~~~--~~--~~~~~~~~~~~v~~~~~~~~~~l~~~~~dg~ 218 (368)
.....|+|.++|+++++-. ..+ .|.+++-.. |+ ....+.........+++.+++ |+++.....
T Consensus 14 ~~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~G-lyV~~~~~i 92 (367)
T TIGR02604 14 RNPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAVGG-VYVATPPDI 92 (367)
T ss_pred CCCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEecCC-EEEeCCCeE
Confidence 4456789999998776643 223 677776542 32 223343333456788998998 555555543
Q ss_pred EEEEEcCCCCCCc-cc-ccceeecc----ccccEEEEEEcCCCCEEEEecCC-------------------CcEEEEeCC
Q 047325 219 VKVWKREQHGKGT-KH-SLAQTLLK----QECAVTALVVSSSRSIVYCGSSD-------------------GLVNFWERE 273 (368)
Q Consensus 219 i~i~d~~~~~~~~-~~-~~~~~~~~----~~~~i~~~~~~~~~~~l~~~~~d-------------------g~i~i~d~~ 273 (368)
.++.|........ .. .....+.. +......++|.|+|.+.++-+.. |.|.-++..
T Consensus 93 ~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~~pd 172 (367)
T TIGR02604 93 LFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQGLGGGLFRYNPD 172 (367)
T ss_pred EEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCceeccCCCccCcccccCceEEEEecC
Confidence 3344554322211 11 11222222 23457789999999866654421 334555554
Q ss_pred CccccceeeeccceEE-EEEEeCCCEEEEee
Q 047325 274 KQLSHGGVLKGHKLAV-LCLAAAGKLVFSGS 303 (368)
Q Consensus 274 ~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~ 303 (368)
..... ....++..+. ++++++++++++-.
T Consensus 173 g~~~e-~~a~G~rnp~Gl~~d~~G~l~~tdn 202 (367)
T TIGR02604 173 GGKLR-VVAHGFQNPYGHSVDSWGDVFFCDN 202 (367)
T ss_pred CCeEE-EEecCcCCCccceECCCCCEEEEcc
Confidence 43221 2222333222 66777787776644
No 400
>PHA02790 Kelch-like protein; Provisional
Probab=95.75 E-value=1.2 Score=39.93 Aligned_cols=141 Identities=14% Similarity=0.109 Sum_probs=66.8
Q ss_pred CCCEEEEEeCC--CcEEEEEccCCeEE--EEeecCCCceEEEEeCCCC-eEEEEcCCC---eEEEEEcCCCCCCcccccc
Q 047325 165 DCGLLYTASWD--RTFKVWRISDSKCL--ESVSAHDDAVNSVVSSSEG-LIFTGSADG---TVKVWKREQHGKGTKHSLA 236 (368)
Q Consensus 165 ~~~~l~~~~~d--~~i~iwd~~~~~~~--~~~~~~~~~v~~~~~~~~~-~l~~~~~dg---~i~i~d~~~~~~~~~~~~~ 236 (368)
++...+.|+.+ ..+..||..+++-. ..+...... .+++.. ++ ..+.|+.++ .+..||.++.. ....
T Consensus 318 ~~~iYviGG~~~~~sve~ydp~~n~W~~~~~l~~~r~~-~~~~~~-~g~IYviGG~~~~~~~ve~ydp~~~~----W~~~ 391 (480)
T PHA02790 318 NNKLYVVGGLPNPTSVERWFHGDAAWVNMPSLLKPRCN-PAVASI-NNVIYVIGGHSETDTTTEYLLPNHDQ----WQFG 391 (480)
T ss_pred CCEEEEECCcCCCCceEEEECCCCeEEECCCCCCCCcc-cEEEEE-CCEEEEecCcCCCCccEEEEeCCCCE----EEeC
Confidence 56666777653 35778887655322 222211111 122222 44 556666543 46788876532 1111
Q ss_pred eeeccccccEEEEEEcCCCCEEEEecCCCcEEEEeCCCccccc-eeeeccceEEEEEEeCCCEEEEeeCC-----CeEEE
Q 047325 237 QTLLKQECAVTALVVSSSRSIVYCGSSDGLVNFWEREKQLSHG-GVLKGHKLAVLCLAAAGKLVFSGSAD-----KTICV 310 (368)
Q Consensus 237 ~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~d-----g~i~i 310 (368)
............+. -++++.+.| |.+.+||.++.+-.. ...............++++.+.||.+ ..+..
T Consensus 392 ~~m~~~r~~~~~~~--~~~~IYv~G---G~~e~ydp~~~~W~~~~~m~~~r~~~~~~v~~~~IYviGG~~~~~~~~~ve~ 466 (480)
T PHA02790 392 PSTYYPHYKSCALV--FGRRLFLVG---RNAEFYCESSNTWTLIDDPIYPRDNPELIIVDNKLLLIGGFYRGSYIDTIEV 466 (480)
T ss_pred CCCCCccccceEEE--ECCEEEEEC---CceEEecCCCCcEeEcCCCCCCccccEEEEECCEEEEECCcCCCcccceEEE
Confidence 11111111112222 255666666 357788887543221 11111122223344578888888764 34666
Q ss_pred EecCCC
Q 047325 311 WRRDGA 316 (368)
Q Consensus 311 w~~~~~ 316 (368)
||..+.
T Consensus 467 Yd~~~~ 472 (480)
T PHA02790 467 YNNRTY 472 (480)
T ss_pred EECCCC
Confidence 666554
No 401
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=95.72 E-value=1.2 Score=41.21 Aligned_cols=114 Identities=9% Similarity=0.029 Sum_probs=73.8
Q ss_pred CCEeEEEEcC--CCCEEEEEeCCCcEEEEEccC-------C----e---------EEEEeecCCCceEEEEeC--CCC-e
Q 047325 155 DAVSCMSLDQ--DCGLLYTASWDRTFKVWRISD-------S----K---------CLESVSAHDDAVNSVVSS--SEG-L 209 (368)
Q Consensus 155 ~~v~~~~~~~--~~~~l~~~~~d~~i~iwd~~~-------~----~---------~~~~~~~~~~~v~~~~~~--~~~-~ 209 (368)
..|+.|.... +...|+.|..||.|.+|.+++ . + +-..+. -...+++++++ ... +
T Consensus 101 HtIN~i~v~~lg~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~-v~~SaWGLdIh~~~~~rl 179 (717)
T PF08728_consen 101 HTINFIKVGDLGGEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLR-VGASAWGLDIHDYKKSRL 179 (717)
T ss_pred ceeeEEEecccCCeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEee-cCCceeEEEEEecCcceE
Confidence 3455555543 556889999999999997632 1 0 111222 23467888887 555 8
Q ss_pred EEEEcCCCeEEEEEcCCCCCCcccccceeeccccccEEEEEEcCCC---C---EEEEecCCCcEEEEeC
Q 047325 210 IFTGSADGTVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSSSR---S---IVYCGSSDGLVNFWER 272 (368)
Q Consensus 210 l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~---~---~l~~~~~dg~i~i~d~ 272 (368)
||+++....|.+|-........ ....-..+...|.+++|-++. . .+++++-.|.+.+|++
T Consensus 180 IAVSsNs~~VTVFaf~l~~~r~---~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 180 IAVSSNSQEVTVFAFALVDERF---YHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred EEEecCCceEEEEEEecccccc---ccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence 8888888888888765431101 111122356678899987743 2 7888999999999887
No 402
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=95.71 E-value=0.56 Score=42.70 Aligned_cols=113 Identities=11% Similarity=0.120 Sum_probs=68.3
Q ss_pred EEEEcCCCCEEEEEeCCCcEEEEEccCCeEEEEee-cCCCceEEEEeC--CCC-eEEEEcCCCeEEEEEcCCCC---CCc
Q 047325 159 CMSLDQDCGLLYTASWDRTFKVWRISDSKCLESVS-AHDDAVNSVVSS--SEG-LIFTGSADGTVKVWKREQHG---KGT 231 (368)
Q Consensus 159 ~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~-~~~~~v~~~~~~--~~~-~l~~~~~dg~i~i~d~~~~~---~~~ 231 (368)
-+.-+.-++..++-+....+.|||.+.+.....-. ...+.|.++.|. |++ .+++.+....|.++-....+ ...
T Consensus 34 li~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy~~~~p 113 (631)
T PF12234_consen 34 LISGSSIKKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDYTNKGP 113 (631)
T ss_pred eEeecccCcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhhhcCCc
Confidence 33334444444444445689999999887544333 346789999885 556 67777778888888642111 111
Q ss_pred ccccceee--ccc-cccEEEEEEcCCCCEEEEecCCCcEEEEeCC
Q 047325 232 KHSLAQTL--LKQ-ECAVTALVVSSSRSIVYCGSSDGLVNFWERE 273 (368)
Q Consensus 232 ~~~~~~~~--~~~-~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~ 273 (368)
....+..+ ..+ ..+|....|.++|..++.++ +.+.|+|-.
T Consensus 114 ~w~~i~~i~i~~~T~h~Igds~Wl~~G~LvV~sG--Nqlfv~dk~ 156 (631)
T PF12234_consen 114 SWAPIRKIDISSHTPHPIGDSIWLKDGTLVVGSG--NQLFVFDKW 156 (631)
T ss_pred ccceeEEEEeecCCCCCccceeEecCCeEEEEeC--CEEEEECCC
Confidence 11222222 222 25788999999987666543 568888743
No 403
>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=95.42 E-value=0.099 Score=44.41 Aligned_cols=161 Identities=14% Similarity=0.114 Sum_probs=96.9
Q ss_pred cCCCEeEEEEcCCCCEEEEEeCCCcEEEEEccCCeEEE-Eee-cCCC----ceE-EEEeCCCC-eEEEEcCCCeEEEE-E
Q 047325 153 HSDAVSCMSLDQDCGLLYTASWDRTFKVWRISDSKCLE-SVS-AHDD----AVN-SVVSSSEG-LIFTGSADGTVKVW-K 223 (368)
Q Consensus 153 ~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~-~~~-~~~~----~v~-~~~~~~~~-~l~~~~~dg~i~i~-d 223 (368)
....|..+-..||++.++.-+. ..+.++++.+..... ++- ...+ .|+ .+.....| .++++..||.|.-| |
T Consensus 219 ~~~~v~qllL~Pdg~~LYv~~g-~~~~v~~L~~r~l~~rkl~~dspg~~~~~Vte~l~lL~Gg~SLLv~~~dG~vsQWFd 297 (733)
T COG4590 219 PFSDVSQLLLTPDGKTLYVRTG-SELVVALLDKRSLQIRKLVDDSPGDSRHQVTEQLYLLSGGFSLLVVHEDGLVSQWFD 297 (733)
T ss_pred CccchHhhEECCCCCEEEEecC-CeEEEEeecccccchhhhhhcCCCchHHHHHHHHHHHhCceeEEEEcCCCceeeeee
Confidence 4456778889999998887765 788899886543211 111 1111 122 11222344 67888899988776 5
Q ss_pred cCCCCCCcccccceeeccccccEEEEEEcCCCCEEEEecCCCcEEEEeCCCccccceeeeccceEEEEEEeCCCEEEEee
Q 047325 224 REQHGKGTKHSLAQTLLKQECAVTALVVSSSRSIVYCGSSDGLVNFWEREKQLSHGGVLKGHKLAVLCLAAAGKLVFSGS 303 (368)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 303 (368)
.+..+. ......+.+.-....+..+.-..+.+-+++-+.+|++.++.....+..............+++|.+.++++-
T Consensus 298 vr~~~~-p~l~h~R~f~l~pa~~~~l~pe~~rkgF~~l~~~G~L~~f~st~~~~lL~~~~~~~~~~~~~Sp~~~~Ll~e- 375 (733)
T COG4590 298 VRRDGQ-PHLNHIRNFKLAPAEVQFLLPETNRKGFYSLYRNGTLQSFYSTSEKLLLFERAYQAPQLVAMSPNQAYLLSE- 375 (733)
T ss_pred eecCCC-CcceeeeccccCcccceeeccccccceEEEEcCCCceeeeecccCcceehhhhhcCcceeeeCcccchheee-
Confidence 554432 222222333333344444444445567888888899888775544433333333456678899999988874
Q ss_pred CCCeEEEEecCCC
Q 047325 304 ADKTICVWRRDGA 316 (368)
Q Consensus 304 ~dg~i~iw~~~~~ 316 (368)
..|.++++.+++.
T Consensus 376 ~~gki~~~~l~Nr 388 (733)
T COG4590 376 DQGKIRLAQLENR 388 (733)
T ss_pred cCCceEEEEecCC
Confidence 3567999988765
No 404
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=95.41 E-value=0.0014 Score=55.48 Aligned_cols=133 Identities=11% Similarity=0.184 Sum_probs=96.3
Q ss_pred EEEEccCCCcEEEEcCCcceecccCCCCCeeEEEEe--CC-EEEEEeCCCeEEEEeecCCCccccccCCccccceeeeec
Q 047325 56 LLYTGSDSKNIRVWKNLKEFCGFKASSGLVKAIVIS--GE-KIFTGHQDGKIRVWKISPKNQSVHKRAGTLPTLKDIFKS 132 (368)
Q Consensus 56 ~l~s~~~dg~i~iw~~~~~~~~~~~~~~~v~~~~~~--~~-~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~ 132 (368)
-++.++.+..+..||-..+...-...++....++|+ ++ .++.+-..+.+.+||+.+.........+.
T Consensus 48 nlavaca~tiv~~YD~agq~~le~n~tg~aldm~wDkegdvlavlAek~~piylwd~n~eytqqLE~gg~---------- 117 (615)
T KOG2247|consen 48 NLAVACANTIVIYYDKAGQVILELNPTGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEYTQQLESGGT---------- 117 (615)
T ss_pred ceehhhhhhHHHhhhhhcceecccCCchhHhhhhhccccchhhhhhhcCCCeeechhhhhhHHHHhccCc----------
Confidence 577888888999999776655444455667778887 44 45566778999999998764322111110
Q ss_pred cCCCCceeEecccceeeeeecCCCEeEEEEcCCCCEEEEEeCCCcEEEEEccCCeEEEEeecCCCceEEEEeCCCCeEEE
Q 047325 133 SIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCGLLYTASWDRTFKVWRISDSKCLESVSAHDDAVNSVVSSSEGLIFT 212 (368)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~ 212 (368)
|.... +.|++....++.+...|.+.|++..+.+.+.....|...+.++++.+.++.+.
T Consensus 118 --------------------~s~sl--l~wsKg~~el~ig~~~gn~viynhgtsR~iiv~Gkh~RRgtq~av~lEd~vil 175 (615)
T KOG2247|consen 118 --------------------SSKSL--LAWSKGTPELVIGNNAGNIVIYNHGTSRRIIVMGKHQRRGTQIAVTLEDYVIL 175 (615)
T ss_pred --------------------chHHH--HhhccCCccccccccccceEEEeccchhhhhhhcccccceeEEEecccceeee
Confidence 22222 67888888888888999999999888777777766889999999999987777
Q ss_pred EcCCCeEE
Q 047325 213 GSADGTVK 220 (368)
Q Consensus 213 ~~~dg~i~ 220 (368)
++.|..+.
T Consensus 176 ~dcd~~L~ 183 (615)
T KOG2247|consen 176 CDCDNTLS 183 (615)
T ss_pred cCcHHHHH
Confidence 77665443
No 405
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=95.41 E-value=0.1 Score=28.27 Aligned_cols=32 Identities=16% Similarity=0.182 Sum_probs=26.4
Q ss_pred ccEEEEEEcCCC---CEEEEecCCCcEEEEeCCCc
Q 047325 244 CAVTALVVSSSR---SIVYCGSSDGLVNFWEREKQ 275 (368)
Q Consensus 244 ~~i~~~~~~~~~---~~l~~~~~dg~i~i~d~~~~ 275 (368)
+.+.++.|+|+. .+|+.+-..|.|.++|+++.
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~~ 35 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRSN 35 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEcccC
Confidence 368899999844 48888888899999999953
No 406
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=95.41 E-value=0.13 Score=48.73 Aligned_cols=135 Identities=11% Similarity=-0.015 Sum_probs=83.0
Q ss_pred CCEeEEEEcCCCCEEEEE--eCCCcEEEEEccCCeEE-----EEee------cCCCceEEEEeCCCC--eEEEEcCCCeE
Q 047325 155 DAVSCMSLDQDCGLLYTA--SWDRTFKVWRISDSKCL-----ESVS------AHDDAVNSVVSSSEG--LIFTGSADGTV 219 (368)
Q Consensus 155 ~~v~~~~~~~~~~~l~~~--~~d~~i~iwd~~~~~~~-----~~~~------~~~~~v~~~~~~~~~--~l~~~~~dg~i 219 (368)
-.+..+...+|+...++. +.+-.|..||+++...- .-+. .......++.|+|.- ..++...|+.|
T Consensus 101 ~pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl 180 (1405)
T KOG3630|consen 101 IPIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSL 180 (1405)
T ss_pred ccceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccch
Confidence 345556666675544433 33447889999753211 1111 122345677888865 67777889999
Q ss_pred EEEEcCCCCCCcccccceeeccccccEEEEEEcCCCCEEEEecCCCcEEEEeCCCcc--ccceeeeccceEEEEEEeC
Q 047325 220 KVWKREQHGKGTKHSLAQTLLKQECAVTALVVSSSRSIVYCGSSDGLVNFWEREKQL--SHGGVLKGHKLAVLCLAAA 295 (368)
Q Consensus 220 ~i~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~--~~~~~~~~~~~~~~~~~~~ 295 (368)
++..+..... .. .-.......++++|+|.|+.++.|...|++.-|...-.. .+..........+.++.|-
T Consensus 181 ~V~~~~~~~~-----~v-~s~p~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~leik~~ip~Pp~~e~yrvl~v~Wl 252 (1405)
T KOG3630|consen 181 RVKSTKQLAQ-----NV-TSFPVTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPSLEIKSEIPEPPVEENYRVLSVTWL 252 (1405)
T ss_pred hhhhhhhhhh-----hh-cccCcccceeeEEeccccceeeEecCCCeEEEeecccceeecccCCCcCCCcceeEEEEe
Confidence 9988764321 11 112345568999999999999999999999998755321 1111111124667777774
No 407
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=95.39 E-value=0.36 Score=38.95 Aligned_cols=99 Identities=19% Similarity=0.104 Sum_probs=59.6
Q ss_pred cEEEEEEcCCCCEEEEec---CCCcEEEEeCCCccccceeeeccceEEEEEEeCCCEEEEeeCCCeEEEEe-cCCCceee
Q 047325 245 AVTALVVSSSRSIVYCGS---SDGLVNFWEREKQLSHGGVLKGHKLAVLCLAAAGKLVFSGSADKTICVWR-RDGAIHTC 320 (368)
Q Consensus 245 ~i~~~~~~~~~~~l~~~~---~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iw~-~~~~~~~~ 320 (368)
.+.+.+++++++.++... ....++++..... ......+....--++++++...+....+...+++. ...+....
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~~--~~~~~~g~~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~~~~ 102 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGGP--VRPVLTGGSLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGTGEP 102 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCCCEEEEEcCCCc--ceeeccCCccccccccCCCCEEEEEcCCCceEEEEecCCCccee
Confidence 688899999999777655 3334555554432 22233444444466777877777767677777774 22222222
Q ss_pred eE-eeeccccCeeEEEEecCCeeeec
Q 047325 321 LS-VLTGHTGPVKCLAVEEDRDSSSS 345 (368)
Q Consensus 321 ~~-~~~~h~~~v~~l~~~~~~~~~~~ 345 (368)
.. ....-...|+++.+||||..+|.
T Consensus 103 ~~v~~~~~~~~I~~l~vSpDG~RvA~ 128 (253)
T PF10647_consen 103 VEVDWPGLRGRITALRVSPDGTRVAV 128 (253)
T ss_pred EEecccccCCceEEEEECCCCcEEEE
Confidence 11 11111228999999999997764
No 408
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=95.36 E-value=2.6 Score=40.00 Aligned_cols=296 Identities=14% Similarity=0.152 Sum_probs=147.0
Q ss_pred CCcEEEEEecC-----C---EEEEccCCCcEEEEcCC--ccee-----cccCCCCCeeEEEEe--CCEEEEEeCCCeEEE
Q 047325 44 EGHIYSLAASK-----D---LLYTGSDSKNIRVWKNL--KEFC-----GFKASSGLVKAIVIS--GEKIFTGHQDGKIRV 106 (368)
Q Consensus 44 ~~~i~~~~~~~-----~---~l~s~~~dg~i~iw~~~--~~~~-----~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~v 106 (368)
+..|.|++++| + +++.|..+..+++--.. .... ....-...|....+. ..+|+++..||.+..
T Consensus 530 e~evaCLDisp~~d~~~~s~~~aVG~Ws~~~~~l~~~pd~~~~~~~~l~~~~iPRSIl~~~~e~d~~yLlvalgdG~l~~ 609 (1096)
T KOG1897|consen 530 EYEVACLDISPLGDAPNKSRLLAVGLWSDISMILTFLPDLILITHEQLSGEIIPRSILLTTFEGDIHYLLVALGDGALLY 609 (1096)
T ss_pred cceeEEEecccCCCCCCcceEEEEEeecceEEEEEECCCcceeeeeccCCCccchheeeEEeeccceEEEEEcCCceEEE
Confidence 45688998762 2 78888887776664321 1111 111222334444444 579999999999988
Q ss_pred EeecCCCcccc--c--cCCccccceeeeeccCCCCceeEecccceeeeeecCCC----------EeE-EEEcCC--CCEE
Q 047325 107 WKISPKNQSVH--K--RAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDA----------VSC-MSLDQD--CGLL 169 (368)
Q Consensus 107 w~~~~~~~~~~--~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------v~~-~~~~~~--~~~l 169 (368)
+-++...-... . ..+..|..-..+.. ......+.....+...+ .+++. +.. ..|+.+ ...+
T Consensus 610 fv~d~~tg~lsd~Kk~~lGt~P~~Lr~f~s-k~~t~vfa~sdrP~viY-~~n~kLv~spls~kev~~~c~f~s~a~~d~l 687 (1096)
T KOG1897|consen 610 FVLDINTGQLSDRKKVTLGTQPISLRTFSS-KSRTAVFALSDRPTVIY-SSNGKLVYSPLSLKEVNHMCPFNSDAYPDSL 687 (1096)
T ss_pred EEEEcccceEccccccccCCCCcEEEEEee-CCceEEEEeCCCCEEEE-ecCCcEEEeccchHHhhhhcccccccCCceE
Confidence 76654432221 1 12222211111111 01111111122221111 12111 111 112211 2345
Q ss_pred EEEeCCCcEEEEEccCCeE--EEEeecCCCceEEEEeCCCC-eEEEEcC-----------C---CeEEEEEcCCCCCCcc
Q 047325 170 YTASWDRTFKVWRISDSKC--LESVSAHDDAVNSVVSSSEG-LIFTGSA-----------D---GTVKVWKREQHGKGTK 232 (368)
Q Consensus 170 ~~~~~d~~i~iwd~~~~~~--~~~~~~~~~~v~~~~~~~~~-~l~~~~~-----------d---g~i~i~d~~~~~~~~~ 232 (368)
+.+. .+.+++.-+..-+. ++++.- ......+++.+.. .+.+.+. . ..++++|.++...
T Consensus 688 ~~~~-~~~l~i~tid~iqkl~irtvpl-~~~prrI~~q~~sl~~~v~s~r~e~~~~~~~ee~~~s~l~vlD~nTf~v--- 762 (1096)
T KOG1897|consen 688 ASAN-GGALTIGTIDEIQKLHIRTVPL-GESPRRICYQESSLTFGVLSNRIESSAEYYGEEYEVSFLRVLDQNTFEV--- 762 (1096)
T ss_pred EEec-CCceEEEEecchhhcceeeecC-CCChhheEecccceEEEEEecccccchhhcCCcceEEEEEEecCCceeE---
Confidence 5554 45677776544322 233332 2344566666643 3322221 1 1355555544311
Q ss_pred cccceeeccc--cccEEEEEEcCC-CCEEEEec----------CCCcEEEEeCCCccccceeeecc--ceEEEEEE-eCC
Q 047325 233 HSLAQTLLKQ--ECAVTALVVSSS-RSIVYCGS----------SDGLVNFWEREKQLSHGGVLKGH--KLAVLCLA-AAG 296 (368)
Q Consensus 233 ~~~~~~~~~~--~~~i~~~~~~~~-~~~l~~~~----------~dg~i~i~d~~~~~~~~~~~~~~--~~~~~~~~-~~~ 296 (368)
.....+... ...+.++.|..| +.+++.|. ..|.|.+|.+.....+ .....+ .+.+.++. ++|
T Consensus 763 -l~~hef~~~E~~~Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~~~L-~~v~e~~v~Gav~aL~~fng 840 (1096)
T KOG1897|consen 763 -LSSHEFERNETALSIISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEELNSL-ELVAETVVKGAVYALVEFNG 840 (1096)
T ss_pred -EeeccccccceeeeeeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEecCCce-eeeeeeeeccceeehhhhCC
Confidence 111111111 134555668776 56777775 2578888887762222 122222 23344444 477
Q ss_pred CEEEEeeCCCeEEEEecCCCceeeeEeeeccccCeeEEEEecCCeeeecCCcceEE
Q 047325 297 KLVFSGSADKTICVWRRDGAIHTCLSVLTGHTGPVKCLAVEEDRDSSSSTSSCAQR 352 (368)
Q Consensus 297 ~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~ 352 (368)
++||. -...|++|++.+. +.++.-..|..++..+...-.+..++.+|-...+
T Consensus 841 kllA~--In~~vrLye~t~~--~eLr~e~~~~~~~~aL~l~v~gdeI~VgDlm~Si 892 (1096)
T KOG1897|consen 841 KLLAG--INQSVRLYEWTTE--RELRIECNISNPIIALDLQVKGDEIAVGDLMRSI 892 (1096)
T ss_pred eEEEe--cCcEEEEEEcccc--ceehhhhcccCCeEEEEEEecCcEEEEeeccceE
Confidence 77764 4568999988776 4555556788889999888888888888755444
No 409
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=95.21 E-value=1.2 Score=41.20 Aligned_cols=166 Identities=13% Similarity=0.193 Sum_probs=91.7
Q ss_pred CCcEEEEEecCCEEEEccCCCcEEEEcCCccee--------cc----------------cCCCCCeeEEEEe----CCEE
Q 047325 44 EGHIYSLAASKDLLYTGSDSKNIRVWKNLKEFC--------GF----------------KASSGLVKAIVIS----GEKI 95 (368)
Q Consensus 44 ~~~i~~~~~~~~~l~s~~~dg~i~iw~~~~~~~--------~~----------------~~~~~~v~~~~~~----~~~l 95 (368)
.+..+++.- .++++.|. .+.|.||+...... .+ ......|+.|... .+.|
T Consensus 40 KNNLtalsq-~n~LFiA~-~s~I~Vy~~d~l~~~p~~~p~~~~~t~p~~~~~~D~~~s~~p~PHtIN~i~v~~lg~~EVL 117 (717)
T PF08728_consen 40 KNNLTALSQ-RNLLFIAY-QSEIYVYDPDGLTQLPSRKPCLRFDTKPEFTSTPDRLISTWPFPHTINFIKVGDLGGEEVL 117 (717)
T ss_pred ccceeEEec-CCEEEEEE-CCEEEEEecCCcccccccccccccccCccccccccccccCCCCCceeeEEEecccCCeeEE
Confidence 444555544 66666654 67899998542111 00 0012235555544 4589
Q ss_pred EEEeCCCeEEEEeecCCCccccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEc--CCCCEEEEEe
Q 047325 96 FTGHQDGKIRVWKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLD--QDCGLLYTAS 173 (368)
Q Consensus 96 ~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~~~l~~~~ 173 (368)
+.|..||.|.+|.++.--............. ....... ..........+++++++ ...++||+++
T Consensus 118 l~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~--~~r~~i~-----------P~f~~~v~~SaWGLdIh~~~~~rlIAVSs 184 (717)
T PF08728_consen 118 LLCTDDGDVLAYYTETIIEAIERFSEDNDSG--FSRLKIK-----------PFFHLRVGASAWGLDIHDYKKSRLIAVSS 184 (717)
T ss_pred EEEecCCeEEEEEHHHHHHHHHhhccccccc--cccccCC-----------CCeEeecCCceeEEEEEecCcceEEEEec
Confidence 9999999999998743211110000000000 0000000 01111244588999998 7778888888
Q ss_pred CCCcEEEEEccCC--eEEE-EeecCCCceEEEEeCCC-----C--eEEEEcCCCeEEEEEc
Q 047325 174 WDRTFKVWRISDS--KCLE-SVSAHDDAVNSVVSSSE-----G--LIFTGSADGTVKVWKR 224 (368)
Q Consensus 174 ~d~~i~iwd~~~~--~~~~-~~~~~~~~v~~~~~~~~-----~--~l~~~~~dg~i~i~d~ 224 (368)
....|.||-.... +... .-..+...|.++.|.++ | .+++++-.|.+.+|++
T Consensus 185 Ns~~VTVFaf~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 185 NSQEVTVFAFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred CCceEEEEEEeccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence 8888887755331 1111 01124556778877654 3 6777888999999888
No 410
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=95.20 E-value=0.11 Score=28.17 Aligned_cols=30 Identities=20% Similarity=0.254 Sum_probs=25.3
Q ss_pred CEeEEEEcCCC---CEEEEEeCCCcEEEEEccC
Q 047325 156 AVSCMSLDQDC---GLLYTASWDRTFKVWRISD 185 (368)
Q Consensus 156 ~v~~~~~~~~~---~~l~~~~~d~~i~iwd~~~ 185 (368)
.|.+++|+|+. .+|+.+-.-|.|.++|+++
T Consensus 2 AvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~ 34 (43)
T PF10313_consen 2 AVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS 34 (43)
T ss_pred CeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence 57899999844 4888888889999999985
No 411
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.07 E-value=0.87 Score=36.51 Aligned_cols=104 Identities=10% Similarity=0.117 Sum_probs=70.1
Q ss_pred EEEEcCCC-CEEEEecCCCc-EEEEeCCCccccceeee---ccceEEEEEEeCCCEEEEeeCC-----CeEEEEecCCCc
Q 047325 248 ALVVSSSR-SIVYCGSSDGL-VNFWEREKQLSHGGVLK---GHKLAVLCLAAAGKLVFSGSAD-----KTICVWRRDGAI 317 (368)
Q Consensus 248 ~~~~~~~~-~~l~~~~~dg~-i~i~d~~~~~~~~~~~~---~~~~~~~~~~~~~~~l~~~~~d-----g~i~iw~~~~~~ 317 (368)
.++++|.. .-++.+-.-|+ ..++|......+..... .|-..--.|++||.+|++.-.| |.|-|||.+..
T Consensus 72 gi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGHGvfs~dG~~LYATEndfd~~rGViGvYd~r~~- 150 (366)
T COG3490 72 GIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGHGVFSPDGRLLYATENDFDPNRGVIGVYDAREG- 150 (366)
T ss_pred CeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCceeecccccCCCCcEEEeecCCCCCCCceEEEEecccc-
Confidence 45566633 23444444443 56788776655532221 1222224689999999986543 78999999854
Q ss_pred eeeeEeeeccccCeeEEEEecCCeeeecCCcceEE
Q 047325 318 HTCLSVLTGHTGPVKCLAVEEDRDSSSSTSSCAQR 352 (368)
Q Consensus 318 ~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~ 352 (368)
...+.++..|.-....+.+.+||+.++.+++.+..
T Consensus 151 fqrvgE~~t~GiGpHev~lm~DGrtlvvanGGIet 185 (366)
T COG3490 151 FQRVGEFSTHGIGPHEVTLMADGRTLVVANGGIET 185 (366)
T ss_pred cceecccccCCcCcceeEEecCCcEEEEeCCceec
Confidence 56788899999899999999999998887775543
No 412
>PRK13684 Ycf48-like protein; Provisional
Probab=95.01 E-value=1.9 Score=36.49 Aligned_cols=152 Identities=9% Similarity=0.039 Sum_probs=77.1
Q ss_pred CCCEeEEEEcCCCCEEEEEeCCCcEEEE-EccCCeEEEEe-ecCCCceEEEEeCCCCeEEEEcCCCeEEEEEcCCCCCCc
Q 047325 154 SDAVSCMSLDQDCGLLYTASWDRTFKVW-RISDSKCLESV-SAHDDAVNSVVSSSEGLIFTGSADGTVKVWKREQHGKGT 231 (368)
Q Consensus 154 ~~~v~~~~~~~~~~~l~~~~~d~~i~iw-d~~~~~~~~~~-~~~~~~v~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~ 231 (368)
...+.++.+.|++.+++++. .|.+..- |- .++.-..+ ......+.++.+.+++.++..+..|.+++=..+.+ .
T Consensus 172 ~g~~~~i~~~~~g~~v~~g~-~G~i~~s~~~-gg~tW~~~~~~~~~~l~~i~~~~~g~~~~vg~~G~~~~~s~d~G---~ 246 (334)
T PRK13684 172 AGVVRNLRRSPDGKYVAVSS-RGNFYSTWEP-GQTAWTPHQRNSSRRLQSMGFQPDGNLWMLARGGQIRFNDPDDL---E 246 (334)
T ss_pred cceEEEEEECCCCeEEEEeC-CceEEEEcCC-CCCeEEEeeCCCcccceeeeEcCCCCEEEEecCCEEEEccCCCC---C
Confidence 34678889999876665554 5655432 21 22222222 23346788999999885555566777653222221 1
Q ss_pred ccccceee-ccccccEEEEEEcCCCCEEEEecCCCcEEEEeCCCccccceee--eccceEEEEEE-eCCCEEEEeeCCCe
Q 047325 232 KHSLAQTL-LKQECAVTALVVSSSRSIVYCGSSDGLVNFWEREKQLSHGGVL--KGHKLAVLCLA-AAGKLVFSGSADKT 307 (368)
Q Consensus 232 ~~~~~~~~-~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~--~~~~~~~~~~~-~~~~~l~~~~~dg~ 307 (368)
........ ......+..+.+.|++..++++ .+|.+.. ....++.-.... ..-......+. .+++..+..+..|.
T Consensus 247 sW~~~~~~~~~~~~~l~~v~~~~~~~~~~~G-~~G~v~~-S~d~G~tW~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~G~ 324 (334)
T PRK13684 247 SWSKPIIPEITNGYGYLDLAYRTPGEIWAGG-GNGTLLV-SKDGGKTWEKDPVGEEVPSNFYKIVFLDPEKGFVLGQRGV 324 (334)
T ss_pred ccccccCCccccccceeeEEEcCCCCEEEEc-CCCeEEE-eCCCCCCCeECCcCCCCCcceEEEEEeCCCceEEECCCce
Confidence 11111110 1122457888999877765554 5675543 333222211111 11111232222 24445555677888
Q ss_pred EEEEe
Q 047325 308 ICVWR 312 (368)
Q Consensus 308 i~iw~ 312 (368)
|..|+
T Consensus 325 il~~~ 329 (334)
T PRK13684 325 LLRYV 329 (334)
T ss_pred EEEec
Confidence 88774
No 413
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=94.99 E-value=1.8 Score=37.28 Aligned_cols=145 Identities=14% Similarity=0.138 Sum_probs=71.8
Q ss_pred ceEEEEeCCCCeEEEEc------------CCC-eEEEEEcCCCCCCcccccceeeccccccEEEEEEcCCCCEEEEecCC
Q 047325 198 AVNSVVSSSEGLIFTGS------------ADG-TVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSSSRSIVYCGSSD 264 (368)
Q Consensus 198 ~v~~~~~~~~~~l~~~~------------~dg-~i~i~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d 264 (368)
....|+|.++|.|+++. ..+ .|.+++-..... . ......+...-.....+++.+++ |+++...
T Consensus 15 ~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG-~-~d~~~vfa~~l~~p~Gi~~~~~G--lyV~~~~ 90 (367)
T TIGR02604 15 NPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDG-K-YDKSNVFAEELSMVTGLAVAVGG--VYVATPP 90 (367)
T ss_pred CCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCC-C-cceeEEeecCCCCccceeEecCC--EEEeCCC
Confidence 45678888888554443 223 676665433211 0 01112222223346788898888 4444444
Q ss_pred CcEEEEeCCCc-------cccceeee------ccceEEEEEEeCCCEEEEeeCC-------------------CeEEEEe
Q 047325 265 GLVNFWEREKQ-------LSHGGVLK------GHKLAVLCLAAAGKLVFSGSAD-------------------KTICVWR 312 (368)
Q Consensus 265 g~i~i~d~~~~-------~~~~~~~~------~~~~~~~~~~~~~~~l~~~~~d-------------------g~i~iw~ 312 (368)
...++.|.... +.+...+. .|...-+.+.|||.+.++-+.. |.|.-++
T Consensus 91 ~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~~ 170 (367)
T TIGR02604 91 DILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQGLGGGLFRYN 170 (367)
T ss_pred eEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCceeccCCCccCcccccCceEEEEe
Confidence 43334354321 11111111 2333446777888876654421 3444454
Q ss_pred cCCCceeeeEeeeccccCeeEEEEecCCeeeecCCcc
Q 047325 313 RDGAIHTCLSVLTGHTGPVKCLAVEEDRDSSSSTSSC 349 (368)
Q Consensus 313 ~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~ 349 (368)
.+....+ .+.........++|+|+|.++.+....
T Consensus 171 pdg~~~e---~~a~G~rnp~Gl~~d~~G~l~~tdn~~ 204 (367)
T TIGR02604 171 PDGGKLR---VVAHGFQNPYGHSVDSWGDVFFCDNDD 204 (367)
T ss_pred cCCCeEE---EEecCcCCCccceECCCCCEEEEccCC
Confidence 4443222 222222345789999999876654433
No 414
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=94.99 E-value=0.58 Score=44.78 Aligned_cols=186 Identities=10% Similarity=0.050 Sum_probs=102.5
Q ss_pred EEEEcCCCCEEEEEeCCCcEEEEEccCC-------e---------EEEEeecC-CCceEEEEeCCCC---eEEEEcCCCe
Q 047325 159 CMSLDQDCGLLYTASWDRTFKVWRISDS-------K---------CLESVSAH-DDAVNSVVSSSEG---LIFTGSADGT 218 (368)
Q Consensus 159 ~~~~~~~~~~l~~~~~d~~i~iwd~~~~-------~---------~~~~~~~~-~~~v~~~~~~~~~---~l~~~~~dg~ 218 (368)
.++.++....+++++..+.+.++-..+- . ....++-| ..++..+...+|+ .++..+.+-.
T Consensus 46 ~la~sn~ysl~Fa~~nsk~L~vfgtknlLi~~it~D~~n~~Vd~~~~~t~~v~k~~pi~~~v~~~D~t~s~v~~tsng~~ 125 (1405)
T KOG3630|consen 46 NLAISNSYSLFFAASNSKSLAVFGTKNLLIDHITSDSTNSLVDADENLTFKVEKEIPIVIFVCFHDATDSVVVSTSNGEA 125 (1405)
T ss_pred hhhcccccceEEEecCCcceeeeccccceeecccccccccccccccccceeeeccccceEEEeccCCceEEEEEecCCce
Confidence 3455555556666666665655543211 0 11222222 2345556666665 3344444557
Q ss_pred EEEEEcCCCCCCccc--ccc---eeeccccccEEEEEEcCCCC-EEEEecCCCcEEEEeCCCcccccee-eeccceEEEE
Q 047325 219 VKVWKREQHGKGTKH--SLA---QTLLKQECAVTALVVSSSRS-IVYCGSSDGLVNFWEREKQLSHGGV-LKGHKLAVLC 291 (368)
Q Consensus 219 i~i~d~~~~~~~~~~--~~~---~~~~~~~~~i~~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~-~~~~~~~~~~ 291 (368)
|..||++........ .++ ...........++.|.|.-. ..+....|+.|++..+......... .........+
T Consensus 126 v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl~V~~~~~~~~~v~s~p~t~~~Tav~ 205 (1405)
T KOG3630|consen 126 VYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSLRVKSTKQLAQNVTSFPVTNSQTAVL 205 (1405)
T ss_pred EEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccchhhhhhhhhhhhhcccCcccceeeEE
Confidence 899999865331100 000 01111223345677777432 4556678888988876643322222 2234455577
Q ss_pred EEeCCCEEEEeeCCCeEEEEecCCCceeeeEeeecc-ccCeeEEEEecCCeeee
Q 047325 292 LAAAGKLVFSGSADKTICVWRRDGAIHTCLSVLTGH-TGPVKCLAVEEDRDSSS 344 (368)
Q Consensus 292 ~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h-~~~v~~l~~~~~~~~~~ 344 (368)
|++.|+.++.|-..|++.-|.........+.....- ...|.+|+|-....+++
T Consensus 206 WSprGKQl~iG~nnGt~vQy~P~leik~~ip~Pp~~e~yrvl~v~Wl~t~eflv 259 (1405)
T KOG3630|consen 206 WSPRGKQLFIGRNNGTEVQYEPSLEIKSEIPEPPVEENYRVLSVTWLSTQEFLV 259 (1405)
T ss_pred eccccceeeEecCCCeEEEeecccceeecccCCCcCCCcceeEEEEecceeEEE
Confidence 888899999999999999996543211111111111 35799999998888655
No 415
>PHA02790 Kelch-like protein; Provisional
Probab=94.99 E-value=2.1 Score=38.43 Aligned_cols=150 Identities=12% Similarity=0.121 Sum_probs=73.2
Q ss_pred CCCEEEEEeCCC-----cEEEEEccCCeEEE--EeecCCCceEEEEeCCCC-eEEEEcCC--CeEEEEEcCCCCCCcccc
Q 047325 165 DCGLLYTASWDR-----TFKVWRISDSKCLE--SVSAHDDAVNSVVSSSEG-LIFTGSAD--GTVKVWKREQHGKGTKHS 234 (368)
Q Consensus 165 ~~~~l~~~~~d~-----~i~iwd~~~~~~~~--~~~~~~~~v~~~~~~~~~-~l~~~~~d--g~i~i~d~~~~~~~~~~~ 234 (368)
++..+++|+.++ .+..||..+++-.. .+....... +++. -++ ..+.|+.+ ..+..||...+. ..
T Consensus 271 ~~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~r~~~-~~v~-~~~~iYviGG~~~~~sve~ydp~~n~----W~ 344 (480)
T PHA02790 271 GEVVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPRLYA-SGVP-ANNKLYVVGGLPNPTSVERWFHGDAA----WV 344 (480)
T ss_pred CCEEEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCchhhcc-eEEE-ECCEEEEECCcCCCCceEEEECCCCe----EE
Confidence 345667776543 46678887765322 221111111 2222 245 55666653 357788875431 11
Q ss_pred cceeeccccccEEEEEEcCCCCEEEEecCCC---cEEEEeCCCccccce-eeeccceEEEEEEeCCCEEEEeeCCCeEEE
Q 047325 235 LAQTLLKQECAVTALVVSSSRSIVYCGSSDG---LVNFWEREKQLSHGG-VLKGHKLAVLCLAAAGKLVFSGSADKTICV 310 (368)
Q Consensus 235 ~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg---~i~i~d~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i 310 (368)
....+.........+.. ++++.+.|+.++ .+..||.++..-... ..............++++.+.|+ .+.+
T Consensus 345 ~~~~l~~~r~~~~~~~~--~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~~~r~~~~~~~~~~~IYv~GG---~~e~ 419 (480)
T PHA02790 345 NMPSLLKPRCNPAVASI--NNVIYVIGGHSETDTTTEYLLPNHDQWQFGPSTYYPHYKSCALVFGRRLFLVGR---NAEF 419 (480)
T ss_pred ECCCCCCCCcccEEEEE--CCEEEEecCcCCCCccEEEEeCCCCEEEeCCCCCCccccceEEEECCEEEEECC---ceEE
Confidence 11122111111222222 567777777553 467888765432111 11111111223345777777774 5778
Q ss_pred EecCCCceeeeEeee
Q 047325 311 WRRDGAIHTCLSVLT 325 (368)
Q Consensus 311 w~~~~~~~~~~~~~~ 325 (368)
||.++..+..+..+.
T Consensus 420 ydp~~~~W~~~~~m~ 434 (480)
T PHA02790 420 YCESSNTWTLIDDPI 434 (480)
T ss_pred ecCCCCcEeEcCCCC
Confidence 988877666555443
No 416
>PLN02193 nitrile-specifier protein
Probab=94.96 E-value=2.6 Score=37.73 Aligned_cols=153 Identities=10% Similarity=0.040 Sum_probs=73.2
Q ss_pred CCCEEEEEeCC-----CcEEEEEccCCeEEEEeec---C-CCceEEEEeCCCCeEEEEcCC-----CeEEEEEcCCCCCC
Q 047325 165 DCGLLYTASWD-----RTFKVWRISDSKCLESVSA---H-DDAVNSVVSSSEGLIFTGSAD-----GTVKVWKREQHGKG 230 (368)
Q Consensus 165 ~~~~l~~~~~d-----~~i~iwd~~~~~~~~~~~~---~-~~~v~~~~~~~~~~l~~~~~d-----g~i~i~d~~~~~~~ 230 (368)
++.+++.|+.+ ..+..||+.+.+=...-.. . ...-.+++...+.+++.|+.+ ..+..||+.+..-
T Consensus 228 ~~~lYvfGG~~~~~~~ndv~~yD~~t~~W~~l~~~~~~P~~R~~h~~~~~~~~iYv~GG~~~~~~~~~~~~yd~~t~~W- 306 (470)
T PLN02193 228 GSTLYVFGGRDASRQYNGFYSFDTTTNEWKLLTPVEEGPTPRSFHSMAADEENVYVFGGVSATARLKTLDSYNIVDKKW- 306 (470)
T ss_pred CCEEEEECCCCCCCCCccEEEEECCCCEEEEcCcCCCCCCCccceEEEEECCEEEEECCCCCCCCcceEEEEECCCCEE-
Confidence 34555666544 3578889877543221110 1 111122222233355566544 3466777764311
Q ss_pred ccccccee---eccccccEEEEEEcCCCCEEEEecCC----CcEEEEeCCCccccceee----eccceEEEEEEeCCCEE
Q 047325 231 TKHSLAQT---LLKQECAVTALVVSSSRSIVYCGSSD----GLVNFWEREKQLSHGGVL----KGHKLAVLCLAAAGKLV 299 (368)
Q Consensus 231 ~~~~~~~~---~~~~~~~i~~~~~~~~~~~l~~~~~d----g~i~i~d~~~~~~~~~~~----~~~~~~~~~~~~~~~~l 299 (368)
..... ............+ ++++++.++.+ ..+.+||+.+..-..... ........+...+++++
T Consensus 307 ---~~~~~~~~~~~~R~~~~~~~~--~gkiyviGG~~g~~~~dv~~yD~~t~~W~~~~~~g~~P~~R~~~~~~~~~~~iy 381 (470)
T PLN02193 307 ---FHCSTPGDSFSIRGGAGLEVV--QGKVWVVYGFNGCEVDDVHYYDPVQDKWTQVETFGVRPSERSVFASAAVGKHIV 381 (470)
T ss_pred ---EeCCCCCCCCCCCCCcEEEEE--CCcEEEEECCCCCccCceEEEECCCCEEEEeccCCCCCCCcceeEEEEECCEEE
Confidence 11100 0011111112222 56677766655 458899987643221110 11111223344577888
Q ss_pred EEeeCC--------------CeEEEEecCCCceeeeEe
Q 047325 300 FSGSAD--------------KTICVWRRDGAIHTCLSV 323 (368)
Q Consensus 300 ~~~~~d--------------g~i~iw~~~~~~~~~~~~ 323 (368)
+.|+.+ +.+.+||+.+.....+..
T Consensus 382 v~GG~~~~~~~~~~~~~~~~ndv~~~D~~t~~W~~~~~ 419 (470)
T PLN02193 382 IFGGEIAMDPLAHVGPGQLTDGTFALDTETLQWERLDK 419 (470)
T ss_pred EECCccCCccccccCccceeccEEEEEcCcCEEEEccc
Confidence 888853 247888887776655543
No 417
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=94.86 E-value=1.7 Score=38.81 Aligned_cols=152 Identities=11% Similarity=0.084 Sum_probs=84.0
Q ss_pred CCEeEEEEcCCCCEEEEEe--CCCcEEEEEccCCeEEEEeecCCCceEEEEeCCCC-----eEEEEcCCCeEEEEEcCCC
Q 047325 155 DAVSCMSLDQDCGLLYTAS--WDRTFKVWRISDSKCLESVSAHDDAVNSVVSSSEG-----LIFTGSADGTVKVWKREQH 227 (368)
Q Consensus 155 ~~v~~~~~~~~~~~l~~~~--~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~-----~l~~~~~dg~i~i~d~~~~ 227 (368)
.++..++|....+.+++.- .+|.+++=| .+.+..| ..|..+.|.|-+ .|++......|.+|.+...
T Consensus 20 HPvhGlaWTDGkqVvLT~L~l~~gE~kfGd---s~viGqF----EhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~s 92 (671)
T PF15390_consen 20 HPVHGLAWTDGKQVVLTDLQLHNGEPKFGD---SKVIGQF----EHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCPS 92 (671)
T ss_pred ccccceEecCCCEEEEEeeeeeCCccccCC---ccEeecc----ceeeeeeecCcccCCCCceEEEeccceEEEEEeccC
Confidence 4678888874444444432 234443322 1233333 468899998864 5667777889999998643
Q ss_pred CCCcccccceeecccc----ccEEEEEEcCCCCEEEEecCCCcEEEEeCCCccccceeeeccceEE--EEEEeCCCEEEE
Q 047325 228 GKGTKHSLAQTLLKQE----CAVTALVVSSSRSIVYCGSSDGLVNFWEREKQLSHGGVLKGHKLAV--LCLAAAGKLVFS 301 (368)
Q Consensus 228 ~~~~~~~~~~~~~~~~----~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~ 301 (368)
................ --...+.|+|....|+.-.....-.+++.+.........-...+.| .|+..||+.|++
T Consensus 93 ~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~dvSV~~sV~~d~srVkaDi~~~G~IhCACWT~DG~RLVV 172 (671)
T PF15390_consen 93 TTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARDVSVLPSVHCDSSRVKADIKTSGLIHCACWTKDGQRLVV 172 (671)
T ss_pred ccccccceeeeeeeccCCcccCCCcccccCCCceEEEEecCceeEeeeeeeCCceEEEeccCCceEEEEEecCcCCEEEE
Confidence 3211111121111111 1124578999988888766655555666653322222222334444 556668887776
Q ss_pred eeCC-CeEEEEec
Q 047325 302 GSAD-KTICVWRR 313 (368)
Q Consensus 302 ~~~d-g~i~iw~~ 313 (368)
+-.. =.-+|||-
T Consensus 173 AvGSsLHSyiWd~ 185 (671)
T PF15390_consen 173 AVGSSLHSYIWDS 185 (671)
T ss_pred EeCCeEEEEEecC
Confidence 6433 34677863
No 418
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=94.84 E-value=1.7 Score=34.90 Aligned_cols=176 Identities=13% Similarity=0.063 Sum_probs=97.5
Q ss_pred CEeEEEEcCCCCEEEEEeCCC--cEEEEEccCCeEEEEeecCC-CceEEEEeCCCCeEEEEcCCCeEEEEEcCCCCCCcc
Q 047325 156 AVSCMSLDQDCGLLYTASWDR--TFKVWRISDSKCLESVSAHD-DAVNSVVSSSEGLIFTGSADGTVKVWKREQHGKGTK 232 (368)
Q Consensus 156 ~v~~~~~~~~~~~l~~~~~d~--~i~iwd~~~~~~~~~~~~~~-~~v~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~ 232 (368)
-...+.|..++.++-+.+.-| .|+.+|+.+++......-.. -.--.++...+......=.++...+||..+..
T Consensus 46 FTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~~d~l~qLTWk~~~~f~yd~~tl~---- 121 (264)
T PF05096_consen 46 FTQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITILGDKLYQLTWKEGTGFVYDPNTLK---- 121 (264)
T ss_dssp EEEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEETTEEEEEESSSSEEEEEETTTTE----
T ss_pred cCccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEECCEEEEEEecCCeEEEEccccce----
Confidence 345788877777777777665 79999999998876655332 22334555555555555678899999997642
Q ss_pred cccceeeccccccEEEEEEcCCCCEEEEecCCCcEEEEeCCCcccccee-eeccceEEEEE---Ee-CCCEEEEeeCCCe
Q 047325 233 HSLAQTLLKQECAVTALVVSSSRSIVYCGSSDGLVNFWEREKQLSHGGV-LKGHKLAVLCL---AA-AGKLVFSGSADKT 307 (368)
Q Consensus 233 ~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~-~~~~~~~~~~~---~~-~~~~l~~~~~dg~ 307 (368)
....+. ..+.=..++ .+++.|+.......++++|.++.+..... ......++..+ -+ +|.+.|=.-....
T Consensus 122 --~~~~~~-y~~EGWGLt--~dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~i~G~IyANVW~td~ 196 (264)
T PF05096_consen 122 --KIGTFP-YPGEGWGLT--SDGKRLIMSDGSSRLYFLDPETFKEVRTIQVTDNGRPVSNLNELEYINGKIYANVWQTDR 196 (264)
T ss_dssp --EEEEEE--SSS--EEE--ECSSCEEEE-SSSEEEEE-TTT-SEEEEEE-EETTEE---EEEEEEETTEEEEEETTSSE
T ss_pred --EEEEEe-cCCcceEEE--cCCCEEEEECCccceEEECCcccceEEEEEEEECCEECCCcEeEEEEcCEEEEEeCCCCe
Confidence 222222 122334555 36777887777788999998764433221 11222333222 22 5555554555556
Q ss_pred EEEEecCCCceeeeEeee---------------ccccCeeEEEEecCCee
Q 047325 308 ICVWRRDGAIHTCLSVLT---------------GHTGPVKCLAVEEDRDS 342 (368)
Q Consensus 308 i~iw~~~~~~~~~~~~~~---------------~h~~~v~~l~~~~~~~~ 342 (368)
|..-|..++ +.+..+. .-..-.+.||+.|+...
T Consensus 197 I~~Idp~tG--~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~ 244 (264)
T PF05096_consen 197 IVRIDPETG--KVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDR 244 (264)
T ss_dssp EEEEETTT---BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTE
T ss_pred EEEEeCCCC--eEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCE
Confidence 666666555 3333221 01345889999887664
No 419
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=94.80 E-value=1.6 Score=34.66 Aligned_cols=144 Identities=11% Similarity=0.148 Sum_probs=74.8
Q ss_pred EEEEEccCCeEEEEeecCCCceEEEEeCCCC-eEEEEcC-C--CeEEEEEcCCCCCCcccccceeeccccccEEEEEEcC
Q 047325 178 FKVWRISDSKCLESVSAHDDAVNSVVSSSEG-LIFTGSA-D--GTVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSS 253 (368)
Q Consensus 178 i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~-d--g~i~i~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 253 (368)
-.+||+.+++....--..+..+.+-.+.++| .+.+|+. + ..+++++......................-.+...-|
T Consensus 48 s~~yD~~tn~~rpl~v~td~FCSgg~~L~dG~ll~tGG~~~G~~~ir~~~p~~~~~~~~w~e~~~~m~~~RWYpT~~~L~ 127 (243)
T PF07250_consen 48 SVEYDPNTNTFRPLTVQTDTFCSGGAFLPDGRLLQTGGDNDGNKAIRIFTPCTSDGTCDWTESPNDMQSGRWYPTATTLP 127 (243)
T ss_pred EEEEecCCCcEEeccCCCCCcccCcCCCCCCCEEEeCCCCccccceEEEecCCCCCCCCceECcccccCCCccccceECC
Confidence 4578888776433222222233334677888 6666665 2 3588888654111111111111112223344555678
Q ss_pred CCCEEEEecCCCc-EEEEeCCCc-cccce--e-------eeccceEEEEEEeCCCEEEEeeCCCeEEEEecCCCceeeeE
Q 047325 254 SRSIVYCGSSDGL-VNFWEREKQ-LSHGG--V-------LKGHKLAVLCLAAAGKLVFSGSADKTICVWRRDGAIHTCLS 322 (368)
Q Consensus 254 ~~~~l~~~~~dg~-i~i~d~~~~-~~~~~--~-------~~~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~ 322 (368)
||+.|+.|+.+.- ..+|..+.. ..... . ....-.+.+-+.|+|++++.+..+.. |||.... +.++
T Consensus 128 DG~vlIvGG~~~~t~E~~P~~~~~~~~~~~~~l~~~~~~~~~nlYP~~~llPdG~lFi~an~~s~--i~d~~~n--~v~~ 203 (243)
T PF07250_consen 128 DGRVLIVGGSNNPTYEFWPPKGPGPGPVTLPFLSQTSDTLPNNLYPFVHLLPDGNLFIFANRGSI--IYDYKTN--TVVR 203 (243)
T ss_pred CCCEEEEeCcCCCcccccCCccCCCCceeeecchhhhccCccccCceEEEcCCCCEEEEEcCCcE--EEeCCCC--eEEe
Confidence 9999999887753 344443211 11100 0 11223345677889999999887654 5566665 3344
Q ss_pred eee
Q 047325 323 VLT 325 (368)
Q Consensus 323 ~~~ 325 (368)
.+.
T Consensus 204 ~lP 206 (243)
T PF07250_consen 204 TLP 206 (243)
T ss_pred eCC
Confidence 443
No 420
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=94.77 E-value=2.3 Score=36.33 Aligned_cols=53 Identities=8% Similarity=0.095 Sum_probs=34.7
Q ss_pred CCcEEEEcCCcc-eecccCCCCCeeEEEEe--CCEEEEEeCCCeEEEEeecCCCccc
Q 047325 63 SKNIRVWKNLKE-FCGFKASSGLVKAIVIS--GEKIFTGHQDGKIRVWKISPKNQSV 116 (368)
Q Consensus 63 dg~i~iw~~~~~-~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~vw~~~~~~~~~ 116 (368)
.+.+.++|+.+. ...+......+....|+ |+.++... ++.|.+++..++....
T Consensus 22 ~~~y~i~d~~~~~~~~l~~~~~~~~~~~~sP~g~~~~~v~-~~nly~~~~~~~~~~~ 77 (353)
T PF00930_consen 22 KGDYYIYDIETGEITPLTPPPPKLQDAKWSPDGKYIAFVR-DNNLYLRDLATGQETQ 77 (353)
T ss_dssp EEEEEEEETTTTEEEESS-EETTBSEEEE-SSSTEEEEEE-TTEEEEESSTTSEEEE
T ss_pred ceeEEEEecCCCceEECcCCccccccceeecCCCeeEEEe-cCceEEEECCCCCeEE
Confidence 457888898864 33333335677777787 77777665 6789999887774433
No 421
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=94.76 E-value=2 Score=35.52 Aligned_cols=140 Identities=14% Similarity=0.150 Sum_probs=63.9
Q ss_pred cCCCceEEEEeCCCC-eEEEEcCCCeEEEEEcCCCCCCcccccceeeccccccEEEEEEcCCCCEEEEecCCCcEEEEeC
Q 047325 194 AHDDAVNSVVSSSEG-LIFTGSADGTVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSSSRSIVYCGSSDGLVNFWER 272 (368)
Q Consensus 194 ~~~~~v~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~ 272 (368)
...+.+..+...++| +++++.......-||.-.. .-..........|..+.|.|++.+.+.+ ..|.|+.=+.
T Consensus 142 ~~~gs~~~~~r~~dG~~vavs~~G~~~~s~~~G~~------~w~~~~r~~~~riq~~gf~~~~~lw~~~-~Gg~~~~s~~ 214 (302)
T PF14870_consen 142 ETSGSINDITRSSDGRYVAVSSRGNFYSSWDPGQT------TWQPHNRNSSRRIQSMGFSPDGNLWMLA-RGGQIQFSDD 214 (302)
T ss_dssp S----EEEEEE-TTS-EEEEETTSSEEEEE-TT-S------S-EEEE--SSS-EEEEEE-TTS-EEEEE-TTTEEEEEE-
T ss_pred CCcceeEeEEECCCCcEEEEECcccEEEEecCCCc------cceEEccCccceehhceecCCCCEEEEe-CCcEEEEccC
Confidence 345678888889999 5555555555567775321 1122223345789999999998766655 7888888772
Q ss_pred C-Cccccc---eeeeccceEEEEEEeC-CCEEEEeeCCCeEEEEecCCC-ceeeeEeeeccccCeeEEEEecCCe
Q 047325 273 E-KQLSHG---GVLKGHKLAVLCLAAA-GKLVFSGSADKTICVWRRDGA-IHTCLSVLTGHTGPVKCLAVEEDRD 341 (368)
Q Consensus 273 ~-~~~~~~---~~~~~~~~~~~~~~~~-~~~l~~~~~dg~i~iw~~~~~-~~~~~~~~~~h~~~v~~l~~~~~~~ 341 (368)
. ...... .........++.+.+. .+.+.+++..|.+.+= .+.+ +.+.......-...++.|.|.++.+
T Consensus 215 ~~~~~~w~~~~~~~~~~~~~~ld~a~~~~~~~wa~gg~G~l~~S-~DgGktW~~~~~~~~~~~n~~~i~f~~~~~ 288 (302)
T PF14870_consen 215 PDDGETWSEPIIPIKTNGYGILDLAYRPPNEIWAVGGSGTLLVS-TDGGKTWQKDRVGENVPSNLYRIVFVNPDK 288 (302)
T ss_dssp TTEEEEE---B-TTSS--S-EEEEEESSSS-EEEEESTT-EEEE-SSTTSS-EE-GGGTTSSS---EEEEEETTE
T ss_pred CCCccccccccCCcccCceeeEEEEecCCCCEEEEeCCccEEEe-CCCCccceECccccCCCCceEEEEEcCCCc
Confidence 2 111111 1111223335666653 3444445556655442 2332 2232222223345588888877655
No 422
>PLN02153 epithiospecifier protein
Probab=94.67 E-value=2.4 Score=36.05 Aligned_cols=57 Identities=7% Similarity=0.014 Sum_probs=30.5
Q ss_pred CcEEEEeCCCccccceee----eccceEEEEEEeCCCEEEEeeCC--------------CeEEEEecCCCceeee
Q 047325 265 GLVNFWEREKQLSHGGVL----KGHKLAVLCLAAAGKLVFSGSAD--------------KTICVWRRDGAIHTCL 321 (368)
Q Consensus 265 g~i~i~d~~~~~~~~~~~----~~~~~~~~~~~~~~~~l~~~~~d--------------g~i~iw~~~~~~~~~~ 321 (368)
..+.+||+.+.+-..... ........+...++++++.|+.. +.+..+|.++.....+
T Consensus 217 ~~v~~yd~~~~~W~~~~~~g~~P~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~n~v~~~d~~~~~W~~~ 291 (341)
T PLN02153 217 NAVQFFDPASGKWTEVETTGAKPSARSVFAHAVVGKYIIIFGGEVWPDLKGHLGPGTLSNEGYALDTETLVWEKL 291 (341)
T ss_pred CceEEEEcCCCcEEeccccCCCCCCcceeeeEEECCEEEEECcccCCccccccccccccccEEEEEcCccEEEec
Confidence 458889987643221111 11112223344577888888852 2567777776654433
No 423
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=94.67 E-value=1.1 Score=39.09 Aligned_cols=138 Identities=14% Similarity=0.132 Sum_probs=80.2
Q ss_pred EEEeCCCcEEEEEccCCeEEEEeecCCCceEEEEeCCCC--------eEEEEcCCCeEEEEEcCCCCCCccccccee-ec
Q 047325 170 YTASWDRTFKVWRISDSKCLESVSAHDDAVNSVVSSSEG--------LIFTGSADGTVKVWKREQHGKGTKHSLAQT-LL 240 (368)
Q Consensus 170 ~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~--------~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~-~~ 240 (368)
..++....++-.|++.|+.+.....|... -+.+.|.. .-++|-++..|.-.|.|..+.. ...... -.
T Consensus 484 ~dg~~~~kLykmDIErGkvveeW~~~ddv--vVqy~p~~kf~qmt~eqtlvGlS~~svFrIDPR~~gNK--i~v~esKdY 559 (776)
T COG5167 484 LDGGERDKLYKMDIERGKVVEEWDLKDDV--VVQYNPYFKFQQMTDEQTLVGLSDYSVFRIDPRARGNK--IKVVESKDY 559 (776)
T ss_pred ecCCCcccceeeecccceeeeEeecCCcc--eeecCCchhHHhcCccceEEeecccceEEecccccCCc--eeeeeehhc
Confidence 34455567778888999999988877665 45666653 3456667777777787765420 001100 00
Q ss_pred cccccEEEEEEcCCCCEEEEecCCCcEEEEeCCCccccceeeeccceEE--EEEEeCCCEEEEeeCCCeEEEEecC
Q 047325 241 KQECAVTALVVSSSRSIVYCGSSDGLVNFWEREKQLSHGGVLKGHKLAV--LCLAAAGKLVFSGSADKTICVWRRD 314 (368)
Q Consensus 241 ~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~~~dg~i~iw~~~ 314 (368)
.......+..-. ..-++++++..|.|++||.-. ......+.+-...| ..++.+|+++++.+. ..+.+-|+.
T Consensus 560 ~tKn~Fss~~tT-esGyIa~as~kGDirLyDRig-~rAKtalP~lG~aIk~idvta~Gk~ilaTCk-~yllL~d~~ 632 (776)
T COG5167 560 KTKNKFSSGMTT-ESGYIAAASRKGDIRLYDRIG-KRAKTALPGLGDAIKHIDVTANGKHILATCK-NYLLLTDVP 632 (776)
T ss_pred cccccccccccc-cCceEEEecCCCceeeehhhc-chhhhcCcccccceeeeEeecCCcEEEEeec-ceEEEEecc
Confidence 111222222222 345899999999999999543 22223333333333 555668887776553 466666654
No 424
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=94.65 E-value=0.41 Score=37.52 Aligned_cols=83 Identities=14% Similarity=0.156 Sum_probs=52.4
Q ss_pred CCeeEEEEeCCEEEEEeCCCeEEEEeecCCCccccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEE
Q 047325 83 GLVKAIVISGEKIFTGHQDGKIRVWKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSL 162 (368)
Q Consensus 83 ~~v~~~~~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 162 (368)
.++..+...+++|++.+.+|.+++||+.+.+....... ..+...... . .. ......|..+.+
T Consensus 13 s~~~~l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~S-i~pll~~~~-~----------~~------~~~~~~i~~~~l 74 (219)
T PF07569_consen 13 SPVSFLECNGSYLLAITSSGLLYVWNLKKGKAVLPPVS-IAPLLNSSP-V----------SD------KSSSPNITSCSL 74 (219)
T ss_pred CceEEEEeCCCEEEEEeCCCeEEEEECCCCeeccCCcc-HHHHhcccc-c----------cc------CCCCCcEEEEEE
Confidence 35556666789999999999999999988765433310 000000000 0 00 025577888888
Q ss_pred cCCCCEEEEEeCCCcEEEEEcc
Q 047325 163 DQDCGLLYTASWDRTFKVWRIS 184 (368)
Q Consensus 163 ~~~~~~l~~~~~d~~i~iwd~~ 184 (368)
+.+|.-+++-+ +|....||..
T Consensus 75 t~~G~PiV~ls-ng~~y~y~~~ 95 (219)
T PF07569_consen 75 TSNGVPIVTLS-NGDSYSYSPD 95 (219)
T ss_pred cCCCCEEEEEe-CCCEEEeccc
Confidence 88887776665 5788888864
No 425
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=94.51 E-value=4.3 Score=38.22 Aligned_cols=34 Identities=21% Similarity=0.186 Sum_probs=28.8
Q ss_pred cCCCEeEEEEcCC---CCEEEEEeCCCcEEEEEccCC
Q 047325 153 HSDAVSCMSLDQD---CGLLYTASWDRTFKVWRISDS 186 (368)
Q Consensus 153 ~~~~v~~~~~~~~---~~~l~~~~~d~~i~iwd~~~~ 186 (368)
+...|..+.|+|. +..|++-..|+.+++||+...
T Consensus 145 ~~~~i~qv~WhP~s~~~~~l~vLtsdn~lR~y~~~~~ 181 (717)
T PF10168_consen 145 SSLEIKQVRWHPWSESDSHLVVLTSDNTLRLYDISDP 181 (717)
T ss_pred CCceEEEEEEcCCCCCCCeEEEEecCCEEEEEecCCC
Confidence 4568899999995 578999999999999999653
No 426
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.48 E-value=4 Score=37.66 Aligned_cols=177 Identities=11% Similarity=0.083 Sum_probs=91.2
Q ss_pred CcEEEEcCCcc-eecccCCCCCeeEEEEe-CCEEEEEeCCCeEEEEeecCCCccccccCCccccceeeeeccCCCCceeE
Q 047325 64 KNIRVWKNLKE-FCGFKASSGLVKAIVIS-GEKIFTGHQDGKIRVWKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIE 141 (368)
Q Consensus 64 g~i~iw~~~~~-~~~~~~~~~~v~~~~~~-~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 141 (368)
-.|+|++.... +.......+.+..+.|+ .+.|+....||++.+|++-....... ..+..
T Consensus 64 ~~I~If~~sG~lL~~~~w~~~~lI~mgWs~~eeLI~v~k~g~v~Vy~~~ge~ie~~-svg~e------------------ 124 (829)
T KOG2280|consen 64 PYIRIFNISGQLLGRILWKHGELIGMGWSDDEELICVQKDGTVHVYGLLGEFIESN-SVGFE------------------ 124 (829)
T ss_pred eeEEEEeccccchHHHHhcCCCeeeecccCCceEEEEeccceEEEeecchhhhccc-ccccc------------------
Confidence 35888887644 33444444588899999 78899999999999999875542221 11000
Q ss_pred ecccceeeeeecCCCEeEEEEcCCCCEEEEEeCCCcEEEEEccCCeEEEEeec---CCCceEEEEeCCCC----eEEEEc
Q 047325 142 VRRHRTALWIRHSDAVSCMSLDQDCGLLYTASWDRTFKVWRISDSKCLESVSA---HDDAVNSVVSSSEG----LIFTGS 214 (368)
Q Consensus 142 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~---~~~~v~~~~~~~~~----~l~~~~ 214 (368)
.....|..+.+..+|-.++ ..+|.+.+-.-.....+.+++. ...+-.|-...+++ .++-..
T Consensus 125 ----------~~~~~I~ec~~f~~GVavl--t~~g~v~~i~~~~~~~~~~~~diP~~~~~~~~Wt~~~~~~~~~~ll~v~ 192 (829)
T KOG2280|consen 125 ----------SQMSDIVECRFFHNGVAVL--TVSGQVILINGVEEPKLRKMPDIPYNELPKSCWTVFQPHRQSTILLDVD 192 (829)
T ss_pred ----------cccCceeEEEEecCceEEE--ecCCcEEEEcCCCcchhhhCCCCCCccCCCcceeEecCCCcceeEEeec
Confidence 0223344444444553333 3345554443222222222222 11121232222222 111111
Q ss_pred -CCCeEEEEEcCCCCCCcccccceeeccccccEEEEEEcCCCCEEEEecCCCcEEEEeCCCccc
Q 047325 215 -ADGTVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSSSRSIVYCGSSDGLVNFWEREKQLS 277 (368)
Q Consensus 215 -~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~ 277 (368)
..+ ..++....... ....+......+..+..+|+.++|+.=..+|.|.+-+.+..+.
T Consensus 193 ~~v~-~~~~q~~~~~~-----q~~~~~~~~~~~~ki~VS~n~~~laLyt~~G~i~~vs~D~~~~ 250 (829)
T KOG2280|consen 193 VAVG-LHICQVEESRV-----QLHALSWPNSSVVKISVSPNRRFLALYTETGKIWVVSIDLSQI 250 (829)
T ss_pred hhhh-hcccceecccc-----cccccCCCCceEEEEEEcCCcceEEEEecCCcEEEEecchhhh
Confidence 111 11111111100 1112222245678899999999999999999999988765443
No 427
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=94.45 E-value=1.8 Score=36.63 Aligned_cols=106 Identities=12% Similarity=0.127 Sum_probs=55.4
Q ss_pred CEeEEEEcCCCCEEEEEeCCCcEEEEEccCCeE---EEEe----ecCCCceEEEEeCCC----CeEEEEcC-------C-
Q 047325 156 AVSCMSLDQDCGLLYTASWDRTFKVWRISDSKC---LESV----SAHDDAVNSVVSSSE----GLIFTGSA-------D- 216 (368)
Q Consensus 156 ~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~---~~~~----~~~~~~v~~~~~~~~----~~l~~~~~-------d- 216 (368)
..+.|+|.|++.+++ +...|.|++++ ..+.. +..+ .........++++|+ +.|++... .
T Consensus 3 ~P~~~a~~pdG~l~v-~e~~G~i~~~~-~~g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~~~~~~ 80 (331)
T PF07995_consen 3 NPRSMAFLPDGRLLV-AERSGRIWVVD-KDGSLKTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYTNADEDGGDN 80 (331)
T ss_dssp SEEEEEEETTSCEEE-EETTTEEEEEE-TTTEECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-TSSSSE
T ss_pred CceEEEEeCCCcEEE-EeCCceEEEEe-CCCcCcceecccccccccccCCcccceeccccCCCCEEEEEEEcccCCCCCc
Confidence 357899999987655 56699999999 44443 2222 123456789999994 53333332 1
Q ss_pred -CeEEEEEcCCCCC--Ccccccceeecc---ccccEEEEEEcCCCCEEEEecC
Q 047325 217 -GTVKVWKREQHGK--GTKHSLAQTLLK---QECAVTALVVSSSRSIVYCGSS 263 (368)
Q Consensus 217 -g~i~i~d~~~~~~--~~~~~~~~~~~~---~~~~i~~~~~~~~~~~l~~~~~ 263 (368)
..|.-|....... ............ ....-..|.|.|++.+.++.+.
T Consensus 81 ~~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG~LYvs~G~ 133 (331)
T PF07995_consen 81 DNRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDGKLYVSVGD 133 (331)
T ss_dssp EEEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTSEEEEEEB-
T ss_pred ceeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCCcEEEEeCC
Confidence 2344444433211 011111111111 2344567999999976666543
No 428
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=94.30 E-value=3.2 Score=35.82 Aligned_cols=107 Identities=17% Similarity=0.206 Sum_probs=65.9
Q ss_pred eCCEEEEEeCCCeEEEEeecCCCccccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcCCCCEEE
Q 047325 91 SGEKIFTGHQDGKIRVWKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCGLLY 170 (368)
Q Consensus 91 ~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~ 170 (368)
.+..++.+..||.|.-.|.+++.......... ....+..-.+..+|+ ++
T Consensus 67 ~dg~v~~~~~~G~i~A~d~~~g~~~W~~~~~~------------------------------~~~~~~~~~~~~~G~-i~ 115 (370)
T COG1520 67 GDGTVYVGTRDGNIFALNPDTGLVKWSYPLLG------------------------------AVAQLSGPILGSDGK-IY 115 (370)
T ss_pred eCCeEEEecCCCcEEEEeCCCCcEEecccCcC------------------------------cceeccCceEEeCCe-EE
Confidence 36677777889988888888887543322211 000111111112554 77
Q ss_pred EEeCCCcEEEEEccCCeEEEEeecCC-CceEEEEeCCCCeEEEEcCCCeEEEEEcCCCC
Q 047325 171 TASWDRTFKVWRISDSKCLESVSAHD-DAVNSVVSSSEGLIFTGSADGTVKVWKREQHG 228 (368)
Q Consensus 171 ~~~~d~~i~iwd~~~~~~~~~~~~~~-~~v~~~~~~~~~~l~~~~~dg~i~i~d~~~~~ 228 (368)
.++.++.+..+|.++|+.+-...... ..+..-....++.++.++.++.+.-.|..++.
T Consensus 116 ~g~~~g~~y~ld~~~G~~~W~~~~~~~~~~~~~~v~~~~~v~~~s~~g~~~al~~~tG~ 174 (370)
T COG1520 116 VGSWDGKLYALDASTGTLVWSRNVGGSPYYASPPVVGDGTVYVGTDDGHLYALNADTGT 174 (370)
T ss_pred EecccceEEEEECCCCcEEEEEecCCCeEEecCcEEcCcEEEEecCCCeEEEEEccCCc
Confidence 88888999999998999888777655 12222233344566666677888888777653
No 429
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=94.22 E-value=5.3 Score=38.11 Aligned_cols=245 Identities=9% Similarity=0.057 Sum_probs=119.5
Q ss_pred cEEEEcCCcceecccCCCCCeeEEEE-eCCEEEEEeCCCeEEEEeecCCCccccccCCccccceeeeeccCCCCceeEec
Q 047325 65 NIRVWKNLKEFCGFKASSGLVKAIVI-SGEKIFTGHQDGKIRVWKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVR 143 (368)
Q Consensus 65 ~i~iw~~~~~~~~~~~~~~~v~~~~~-~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 143 (368)
.||+.+-......+....+...+.++ +...++.++.++.+...++...........
T Consensus 471 ~iRl~ss~~~~~~W~~p~~~ti~~~~~n~sqVvvA~~~~~l~y~~i~~~~l~e~~~~----------------------- 527 (1096)
T KOG1897|consen 471 SIRLVSSAGLRSEWRPPGKITIGVVSANASQVVVAGGGLALFYLEIEDGGLREVSHK----------------------- 527 (1096)
T ss_pred cEEEEcchhhhhcccCCCceEEEEEeecceEEEEecCccEEEEEEeeccceeeeeeh-----------------------
Confidence 35555544333333333333333333 355677777777777777766542111111
Q ss_pred ccceeeeeecCCCEeEEEEcCC---C---CEEEEEeCCCcEEEEE-ccCCeEEEEe--ec--CCCceEEEEeCCCC-eEE
Q 047325 144 RHRTALWIRHSDAVSCMSLDQD---C---GLLYTASWDRTFKVWR-ISDSKCLESV--SA--HDDAVNSVVSSSEG-LIF 211 (368)
Q Consensus 144 ~~~~~~~~~~~~~v~~~~~~~~---~---~~l~~~~~d~~i~iwd-~~~~~~~~~~--~~--~~~~v~~~~~~~~~-~l~ 211 (368)
.....|.|+.++|- . +++++|..+..+.+.- +.....+... .. -...|.-..+-.+. +|.
T Consensus 528 --------~~e~evaCLDisp~~d~~~~s~~~aVG~Ws~~~~~l~~~pd~~~~~~~~l~~~~iPRSIl~~~~e~d~~yLl 599 (1096)
T KOG1897|consen 528 --------EFEYEVACLDISPLGDAPNKSRLLAVGLWSDISMILTFLPDLILITHEQLSGEIIPRSILLTTFEGDIHYLL 599 (1096)
T ss_pred --------eecceeEEEecccCCCCCCcceEEEEEeecceEEEEEECCCcceeeeeccCCCccchheeeEEeeccceEEE
Confidence 14568999999973 2 2788888776555443 2333322222 11 12234344455544 999
Q ss_pred EEcCCCeEEEEEcCCCCCCcccccceeeccccccEEEEEEcCCCCEEEEecCCCcEEEEeCCCccccceeeeccceEEEE
Q 047325 212 TGSADGTVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSSSRSIVYCGSSDGLVNFWEREKQLSHGGVLKGHKLAVLC 291 (368)
Q Consensus 212 ~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~ 291 (368)
++..||.+..|-+....... ...+...-...++.--.|+..++.-+-+..|.-..+|..+........-...-..+..
T Consensus 600 valgdG~l~~fv~d~~tg~l--sd~Kk~~lGt~P~~Lr~f~sk~~t~vfa~sdrP~viY~~n~kLv~spls~kev~~~c~ 677 (1096)
T KOG1897|consen 600 VALGDGALLYFVLDINTGQL--SDRKKVTLGTQPISLRTFSSKSRTAVFALSDRPTVIYSSNGKLVYSPLSLKEVNHMCP 677 (1096)
T ss_pred EEcCCceEEEEEEEcccceE--ccccccccCCCCcEEEEEeeCCceEEEEeCCCCEEEEecCCcEEEeccchHHhhhhcc
Confidence 99999999887765432200 0111111223344444455444433334445555555544322211111111112222
Q ss_pred EEeC--CCEEEEeeCCCeEEEEecCCCceeeeEeeeccccCeeEEEEecCCeeee
Q 047325 292 LAAA--GKLVFSGSADKTICVWRRDGAIHTCLSVLTGHTGPVKCLAVEEDRDSSS 344 (368)
Q Consensus 292 ~~~~--~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~ 344 (368)
++.+ +..|+++. .+.+++..++.-....+++.. -......+++.+....++
T Consensus 678 f~s~a~~d~l~~~~-~~~l~i~tid~iqkl~irtvp-l~~~prrI~~q~~sl~~~ 730 (1096)
T KOG1897|consen 678 FNSDAYPDSLASAN-GGALTIGTIDEIQKLHIRTVP-LGESPRRICYQESSLTFG 730 (1096)
T ss_pred cccccCCceEEEec-CCceEEEEecchhhcceeeec-CCCChhheEecccceEEE
Confidence 3322 34555554 456778777655444455543 334567777777555433
No 430
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.21 E-value=1.6 Score=37.55 Aligned_cols=103 Identities=6% Similarity=0.069 Sum_probs=68.9
Q ss_pred cCCCEeEEEEcCCCCEEEEEeCCCcEEEEEccCCeEE----EEeecCCCceEEEEeCCCCeEEEEcCCCeEEEEEcCCCC
Q 047325 153 HSDAVSCMSLDQDCGLLYTASWDRTFKVWRISDSKCL----ESVSAHDDAVNSVVSSSEGLIFTGSADGTVKVWKREQHG 228 (368)
Q Consensus 153 ~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~----~~~~~~~~~v~~~~~~~~~~l~~~~~dg~i~i~d~~~~~ 228 (368)
..++|.++.|++|.+.+++--.+.+|.+++....+.. .+.+.....|....|..+..++..... .+.+|......
T Consensus 65 d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~~~~~ck~k~~~IlGF~W~~s~e~A~i~~~-G~e~y~v~pek 143 (657)
T KOG2377|consen 65 DKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLEYTQECKTKNANILGFCWTSSTEIAFITDQ-GIEFYQVLPEK 143 (657)
T ss_pred CCCceeEEEeccCcceEEEEecCceEEEEecCCCchhhHHHHHhccCcceeEEEEEecCeeEEEEecC-CeEEEEEchhh
Confidence 4579999999999999999999999999987433322 223334556888899877655554433 35666554322
Q ss_pred CCcccccceeeccccccEEEEEEcCCCCEEEEe
Q 047325 229 KGTKHSLAQTLLKQECAVTALVVSSSRSIVYCG 261 (368)
Q Consensus 229 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~ 261 (368)
..++....+...|.-..|.++.+.++.+
T Consensus 144 -----rslRlVks~~~nvnWy~yc~et~v~LL~ 171 (657)
T KOG2377|consen 144 -----RSLRLVKSHNLNVNWYMYCPETAVILLS 171 (657)
T ss_pred -----hhhhhhhhcccCccEEEEccccceEeee
Confidence 2344555666777777788877654433
No 431
>PF10433 MMS1_N: Mono-functional DNA-alkylating methyl methanesulfonate N-term; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 2B5N_C 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A ....
Probab=94.13 E-value=4.3 Score=36.75 Aligned_cols=248 Identities=10% Similarity=0.102 Sum_probs=116.4
Q ss_pred CCEEEEccCCCcEEEEcCCcce----ecccCC-CCCeeEEEEe-CC--EEEEEeCCCeEEEEeecCCCccccccCCcccc
Q 047325 54 KDLLYTGSDSKNIRVWKNLKEF----CGFKAS-SGLVKAIVIS-GE--KIFTGHQDGKIRVWKISPKNQSVHKRAGTLPT 125 (368)
Q Consensus 54 ~~~l~s~~~dg~i~iw~~~~~~----~~~~~~-~~~v~~~~~~-~~--~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~ 125 (368)
++.++-+..+|.+..-.+...- ...-+. .....++.+- +. +|+.|+.-|.=.++.+..........
T Consensus 222 ~~~~lL~~e~G~l~~l~l~~~~~~i~i~~~g~~~~~~s~l~~l~~g~d~lf~gs~~gds~l~~~~~~~l~~~~~------ 295 (504)
T PF10433_consen 222 GDRILLQDEDGDLYLLTLDNDGGSISITYLGTLCSIASSLTYLKNGGDYLFVGSEFGDSQLLQISLSNLEVLDS------ 295 (504)
T ss_dssp SSEEEEEETTSEEEEEEEEEEEEEEEEEEEEE--S-ESEEEEESTT--EEEEEESSS-EEEEEEESESEEEEEE------
T ss_pred CCEEEEEeCCCeEEEEEEEECCCeEEEEEcCCcCChhheEEEEcCCCEEEEEEEecCCcEEEEEeCCCcEEEEe------
Confidence 3477778899988877654321 122222 4556677766 55 89999886665555555222111110
Q ss_pred ceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcCC----CC------EEEEEe---CCCcEEEEEccCCeEEE--
Q 047325 126 LKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQD----CG------LLYTAS---WDRTFKVWRISDSKCLE-- 190 (368)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~----~~------~l~~~~---~d~~i~iwd~~~~~~~~-- 190 (368)
...-++|.++++.+. .. .|++++ .+|.+++.. .|-...
T Consensus 296 -------------------------~~N~~Pi~D~~v~~~~~~~~~~~~~~~~lv~~sG~g~~gsL~~lr--~Gi~~~~~ 348 (504)
T PF10433_consen 296 -------------------------LPNWGPIVDFCVVDSSNSGQPSNPSSDQLVACSGAGKRGSLRILR--NGIGIEGL 348 (504)
T ss_dssp -------------------------E----SEEEEEEE-TSSSSS-------EEEEEESSGGG-EEEEEE--ESBEEE--
T ss_pred -------------------------ccCcCCccceEEeccccCCCCcccccceEEEEECcCCCCcEEEEe--ccCCceee
Confidence 114567888777531 11 555554 467888874 332222
Q ss_pred Ee--ecC--CCceEEEEeCC--CCeEEEEcCCCeEEEEEcCCCCCCcccccc--eeeccccccEEEEEEcCCCCEEEEec
Q 047325 191 SV--SAH--DDAVNSVVSSS--EGLIFTGSADGTVKVWKREQHGKGTKHSLA--QTLLKQECAVTALVVSSSRSIVYCGS 262 (368)
Q Consensus 191 ~~--~~~--~~~v~~~~~~~--~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~--~~~~~~~~~i~~~~~~~~~~~l~~~~ 262 (368)
.. ... -..++.+.... +.+|+.+..+ .-+++.+...+........ ..+......+.+-.+. ++.++=..
T Consensus 349 ~~~~~~l~~v~~iW~l~~~~~~~~~lv~S~~~-~T~vl~~~~~d~~e~~~e~~~~~f~~~~~Tl~~~~~~--~~~ivQVt 425 (504)
T PF10433_consen 349 ELASSELPGVTGIWTLKLSSSDHSYLVLSFPN-ETRVLQISEGDDGEEVEEVEEDGFDTDEPTLAAGNVG--DGRIVQVT 425 (504)
T ss_dssp EEEEEEESTEEEEEEE-SSSSSBSEEEEEESS-EEEEEEES----SSEEEEE---TS-SSS-EEEEEEET--TTEEEEEE
T ss_pred eeeccCCCCceEEEEeeecCCCceEEEEEcCC-ceEEEEEecccCCcchhhhhhccCCCCCCCeEEEEcC--CCeEEEEe
Confidence 11 111 23445555443 2256555544 4456555410000000000 0122222233333332 34444444
Q ss_pred CCCcEEEEeCCCccccceeeeccceEEEEEEeCCCEEEEeeCCCeEEEEecCCCceeeeEeee---ccccCeeEEEEec
Q 047325 263 SDGLVNFWEREKQLSHGGVLKGHKLAVLCLAAAGKLVFSGSADKTICVWRRDGAIHTCLSVLT---GHTGPVKCLAVEE 338 (368)
Q Consensus 263 ~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~---~h~~~v~~l~~~~ 338 (368)
.. .|++.+....+............+.+.+.++.+++.+-.++.+..+.++.........-. .....|.|+...|
T Consensus 426 ~~-~i~l~~~~~~~~~~~w~~~~~~~I~~a~~~~~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eis~l~i~p 503 (504)
T PF10433_consen 426 PK-GIRLIDLEDGKLTQEWKPPAGSIIVAASINDPQVLVALSGGELVYFELDDNKISVSDNDETILELDNEISCLSIEP 503 (504)
T ss_dssp SS-EEEEEESSSTSEEEEEE-TTS---SEEEESSSEEEEEE-TTEEEEEEEETTEEEEEEE----EE-SS-EEEEE---
T ss_pred cC-eEEEEECCCCeEEEEEeCCCCCeEEEEEECCCEEEEEEeCCcEEEEEEECCceeeeeeccccccCCCceEEEEeCC
Confidence 33 478888766554433444456667777788888888888999999988765332111111 1456788888766
No 432
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.06 E-value=2.7 Score=34.08 Aligned_cols=167 Identities=6% Similarity=0.038 Sum_probs=97.2
Q ss_pred ccCCCCCeeEEEEe--CCEEEEEeCCCeEEEEeecCCCccccccCCccccceeeeeccCCCCceeEecccceeeeeecCC
Q 047325 78 FKASSGLVKAIVIS--GEKIFTGHQDGKIRVWKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSD 155 (368)
Q Consensus 78 ~~~~~~~v~~~~~~--~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (368)
..+-...+.++.|+ .+.|++......-.|+=-..++.......... .
T Consensus 81 i~g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~-------------------------------~ 129 (316)
T COG3204 81 ILGETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGF-------------------------------S 129 (316)
T ss_pred cccccccccceeeCCCcceEEEecCCCceEEEEecCCceEEEeccccc-------------------------------C
Confidence 34555569999998 56677776666666665555554443332211 1
Q ss_pred CEeEEEEcCCCCEEEEEeCCCcEEEEEccCCeEEE----------EeecCCCceEEEEeCCCC-eEEEEcCCCeEEEEEc
Q 047325 156 AVSCMSLDQDCGLLYTASWDRTFKVWRISDSKCLE----------SVSAHDDAVNSVVSSSEG-LIFTGSADGTVKVWKR 224 (368)
Q Consensus 156 ~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~----------~~~~~~~~v~~~~~~~~~-~l~~~~~dg~i~i~d~ 224 (368)
..-.+.+..+++++++--.++.+.++.+....... .....+.....++|.|.+ .|+.+-+..-+.||..
T Consensus 130 DpE~Ieyig~n~fvi~dER~~~l~~~~vd~~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~ 209 (316)
T COG3204 130 DPETIEYIGGNQFVIVDERDRALYLFTVDADTTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEV 209 (316)
T ss_pred ChhHeEEecCCEEEEEehhcceEEEEEEcCCccEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEE
Confidence 22346666677777766677777777665442111 111225567789999988 7777777777777776
Q ss_pred CCCCCCcccccceee----ccccccEEEEEEcC-CCCEEEEecCCCcEEEEeCCCc
Q 047325 225 EQHGKGTKHSLAQTL----LKQECAVTALVVSS-SRSIVYCGSSDGLVNFWEREKQ 275 (368)
Q Consensus 225 ~~~~~~~~~~~~~~~----~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~ 275 (368)
............... .-.-..+.++.|++ .+..|+-+.+++.+.-.|....
T Consensus 210 ~~~~~~l~~~~~~~~~~~~~~f~~DvSgl~~~~~~~~LLVLS~ESr~l~Evd~~G~ 265 (316)
T COG3204 210 TQSPSSLSVHASLDPTADRDLFVLDVSGLEFNAITNSLLVLSDESRRLLEVDLSGE 265 (316)
T ss_pred ecCCcccccccccCcccccceEeeccccceecCCCCcEEEEecCCceEEEEecCCC
Confidence 643211100000000 00123467788887 4556677777787777777643
No 433
>COG5276 Uncharacterized conserved protein [Function unknown]
Probab=94.02 E-value=2.7 Score=34.03 Aligned_cols=231 Identities=13% Similarity=0.110 Sum_probs=127.7
Q ss_pred CCcEEEEEecCCEEEEccCCCcEEEEcCCccee----cccCCCCCeeEEEEeCCEEEEEeCCCeEEEEeecCCCcccccc
Q 047325 44 EGHIYSLAASKDLLYTGSDSKNIRVWKNLKEFC----GFKASSGLVKAIVISGEKIFTGHQDGKIRVWKISPKNQSVHKR 119 (368)
Q Consensus 44 ~~~i~~~~~~~~~l~s~~~dg~i~iw~~~~~~~----~~~~~~~~v~~~~~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~ 119 (368)
.+-+..+.+++++...+..+.-++|.|+..+.. .+-.-.+--.++..+|++...+..|.-+.+.|+.+.......-
T Consensus 86 ~~l~~Dv~vse~yvyvad~ssGL~IvDIS~P~sP~~~~~lnt~gyaygv~vsGn~aYVadlddgfLivdvsdpssP~lag 165 (370)
T COG5276 86 RDLFADVRVSEEYVYVADWSSGLRIVDISTPDSPTLIGFLNTDGYAYGVYVSGNYAYVADLDDGFLIVDVSDPSSPQLAG 165 (370)
T ss_pred hhhhheeEecccEEEEEcCCCceEEEeccCCCCcceeccccCCceEEEEEecCCEEEEeeccCcEEEEECCCCCCceeee
Confidence 445667788899888888888899999864322 1112225567777889999999977778889998765322111
Q ss_pred CCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcCCCCEEEEEeCCCcEEEEEccCCe---EEEEeecCC
Q 047325 120 AGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCGLLYTASWDRTFKVWRISDSK---CLESVSAHD 196 (368)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~---~~~~~~~~~ 196 (368)
.. ......-..++++ |++-..+..|+-+.+.|+.... .+.... ..
T Consensus 166 ry-----------------------------a~~~~d~~~v~IS--Gn~AYvA~~d~GL~ivDVSnp~sPvli~~~n-~g 213 (370)
T COG5276 166 RY-----------------------------ALPGGDTHDVAIS--GNYAYVAWRDGGLTIVDVSNPHSPVLIGSYN-TG 213 (370)
T ss_pred ee-----------------------------ccCCCCceeEEEe--cCeEEEEEeCCCeEEEEccCCCCCeEEEEEe-cC
Confidence 10 0011222345554 6677778889999999987543 233322 23
Q ss_pred CceEEEEeCCCCeEEEEcCCCeEEEEEcCCCCCCcccccceeeccccc--cEEEEEEcCCCCEEEEecCCCcEEEEeCCC
Q 047325 197 DAVNSVVSSSEGLIFTGSADGTVKVWKREQHGKGTKHSLAQTLLKQEC--AVTALVVSSSRSIVYCGSSDGLVNFWEREK 274 (368)
Q Consensus 197 ~~v~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~--~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~ 274 (368)
..+.++..+++..+++-. +-.+.+-|....... ...-....+. .++.+.. .+++......+.-+.+-|..+
T Consensus 214 ~g~~sv~vsdnr~y~vvy-~egvlivd~s~~ssp----~~~gsyet~~p~~~s~v~V--s~~~~Yvadga~gl~~idisn 286 (370)
T COG5276 214 PGTYSVSVSDNRAYLVVY-DEGVLIVDVSGPSSP----TVFGSYETSNPVSISTVPV--SGEYAYVADGAKGLPIIDISN 286 (370)
T ss_pred CceEEEEecCCeeEEEEc-ccceEEEecCCCCCc----eEeeccccCCcccccceec--ccceeeeeccccCceeEeccC
Confidence 367888888776333333 334666676654220 1111111111 2222233 456666666666667777665
Q ss_pred ccccc--eeeeccceEEEEEEeCCCEEEEeeCCCeEEEEecC
Q 047325 275 QLSHG--GVLKGHKLAVLCLAAAGKLVFSGSADKTICVWRRD 314 (368)
Q Consensus 275 ~~~~~--~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~ 314 (368)
+..+. ..+.........+...+.++..+..+ ...+-+..
T Consensus 287 p~spfl~ss~~t~g~~a~gi~ay~~y~yiadkn-~g~vV~~s 327 (370)
T COG5276 287 PPSPFLSSSLDTAGYQAAGIRAYGNYNYIADKN-TGAVVDAS 327 (370)
T ss_pred CCCCchhccccCCCccccceEEecCeeEeccCC-ceEEEeCC
Confidence 43321 11111111233444556666666555 34444443
No 434
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=93.88 E-value=0.67 Score=36.38 Aligned_cols=67 Identities=18% Similarity=0.161 Sum_probs=46.5
Q ss_pred CcEEEEEecCCEEEEccCCCcEEEEcCCcceeccc----------------CCCCCeeEEEEe--CCEEEEEeCCCeEEE
Q 047325 45 GHIYSLAASKDLLYTGSDSKNIRVWKNLKEFCGFK----------------ASSGLVKAIVIS--GEKIFTGHQDGKIRV 106 (368)
Q Consensus 45 ~~i~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~----------------~~~~~v~~~~~~--~~~l~s~~~dg~i~v 106 (368)
.++..+...+++|++-..+|.+++||+.+....+. .....|..+.++ |.-+++- .+|....
T Consensus 13 s~~~~l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~l-sng~~y~ 91 (219)
T PF07569_consen 13 SPVSFLECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTL-SNGDSYS 91 (219)
T ss_pred CceEEEEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEE-eCCCEEE
Confidence 35666888899999999999999999875433221 345667777776 4444444 4678888
Q ss_pred EeecCC
Q 047325 107 WKISPK 112 (368)
Q Consensus 107 w~~~~~ 112 (368)
|+.+-+
T Consensus 92 y~~~L~ 97 (219)
T PF07569_consen 92 YSPDLG 97 (219)
T ss_pred eccccc
Confidence 876543
No 435
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=93.58 E-value=4.8 Score=35.37 Aligned_cols=157 Identities=13% Similarity=0.132 Sum_probs=75.0
Q ss_pred EeEEEEcCCCCEEEEEeCC----CcEEEEEccCC----eEEEEeecCCCce-EEEEeCCCC-eEEEEc---CCCeEEEEE
Q 047325 157 VSCMSLDQDCGLLYTASWD----RTFKVWRISDS----KCLESVSAHDDAV-NSVVSSSEG-LIFTGS---ADGTVKVWK 223 (368)
Q Consensus 157 v~~~~~~~~~~~l~~~~~d----~~i~iwd~~~~----~~~~~~~~~~~~v-~~~~~~~~~-~l~~~~---~dg~i~i~d 223 (368)
...+..++++++++..... ..+.+.|+..+ .....+......+ ..+... .+ +++... .++.|.-.+
T Consensus 229 ~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~~~~~~~~~v~~~-~~~~yi~Tn~~a~~~~l~~~~ 307 (414)
T PF02897_consen 229 FVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSPREDGVEYYVDHH-GDRLYILTNDDAPNGRLVAVD 307 (414)
T ss_dssp EEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEESSSS-EEEEEEE-TTEEEEEE-TT-TT-EEEEEE
T ss_pred EEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeCCCCceEEEEEcc-CCEEEEeeCCCCCCcEEEEec
Confidence 5678889999987764432 35788888764 2233333333333 334333 44 333332 246777777
Q ss_pred cCCCCCCcccccceeeccccc--cEEEEEEcCCCCEEE-EecCCC--cEEEEeCC-CccccceeeeccceEEEEEEe--C
Q 047325 224 REQHGKGTKHSLAQTLLKQEC--AVTALVVSSSRSIVY-CGSSDG--LVNFWERE-KQLSHGGVLKGHKLAVLCLAA--A 295 (368)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~~--~i~~~~~~~~~~~l~-~~~~dg--~i~i~d~~-~~~~~~~~~~~~~~~~~~~~~--~ 295 (368)
+...... .....+..+.. .+..+... +++|+ .-..++ .|+++++. ..... .......+.+..++. +
T Consensus 308 l~~~~~~---~~~~~l~~~~~~~~l~~~~~~--~~~Lvl~~~~~~~~~l~v~~~~~~~~~~-~~~~p~~g~v~~~~~~~~ 381 (414)
T PF02897_consen 308 LADPSPA---EWWTVLIPEDEDVSLEDVSLF--KDYLVLSYRENGSSRLRVYDLDDGKESR-EIPLPEAGSVSGVSGDFD 381 (414)
T ss_dssp TTSTSGG---GEEEEEE--SSSEEEEEEEEE--TTEEEEEEEETTEEEEEEEETT-TEEEE-EEESSSSSEEEEEES-TT
T ss_pred ccccccc---cceeEEcCCCCceeEEEEEEE--CCEEEEEEEECCccEEEEEECCCCcEEe-eecCCcceEEeccCCCCC
Confidence 7655321 01113333433 45555443 44444 444444 57888988 43333 222223344444443 3
Q ss_pred CC-EEEEeeC---CCeEEEEecCCCceee
Q 047325 296 GK-LVFSGSA---DKTICVWRRDGAIHTC 320 (368)
Q Consensus 296 ~~-~l~~~~~---dg~i~iw~~~~~~~~~ 320 (368)
++ +.++-+. -+++..||+.+++...
T Consensus 382 ~~~~~~~~ss~~~P~~~y~~d~~t~~~~~ 410 (414)
T PF02897_consen 382 SDELRFSYSSFTTPPTVYRYDLATGELTL 410 (414)
T ss_dssp -SEEEEEEEETTEEEEEEEEETTTTCEEE
T ss_pred CCEEEEEEeCCCCCCEEEEEECCCCCEEE
Confidence 33 2222222 3567777777664443
No 436
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=93.50 E-value=1.3 Score=38.35 Aligned_cols=77 Identities=12% Similarity=0.101 Sum_probs=53.3
Q ss_pred eecCCCEeEEEEcCCCCEEEEEeCCCcEEEEEccCCeEEEEeecCCCceEE----EEeCC-------------C-C--eE
Q 047325 151 IRHSDAVSCMSLDQDCGLLYTASWDRTFKVWRISDSKCLESVSAHDDAVNS----VVSSS-------------E-G--LI 210 (368)
Q Consensus 151 ~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~----~~~~~-------------~-~--~l 210 (368)
......+.++..+|++++.++...-|.|.++|+.++..++.+++-.+.=.. ..-.. . . ++
T Consensus 304 ~D~~R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vvrmWKGYRdAqc~wi~~~~~~~~~~~~~~~~~~~~~~~l~Lv 383 (415)
T PF14655_consen 304 PDSKREGESICLSPSGRLAAVTDSLGRVLLIDVARGIVVRMWKGYRDAQCGWIEVPEEGDRDRSNSNSPKSSSRFALFLV 383 (415)
T ss_pred ccCCceEEEEEECCCCCEEEEEcCCCcEEEEECCCChhhhhhccCccceEEEEEeecccccccccccccCCCCcceEEEE
Confidence 345566889999999999888888899999999999888777764432111 11000 1 1 33
Q ss_pred EEEcCCCeEEEEEcCCC
Q 047325 211 FTGSADGTVKVWKREQH 227 (368)
Q Consensus 211 ~~~~~dg~i~i~d~~~~ 227 (368)
+-+-.-|.|.+|.++.+
T Consensus 384 IyaprRg~lEvW~~~~g 400 (415)
T PF14655_consen 384 IYAPRRGILEVWSMRQG 400 (415)
T ss_pred EEeccCCeEEEEecCCC
Confidence 44556788899998865
No 437
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=93.45 E-value=3.3 Score=33.21 Aligned_cols=146 Identities=10% Similarity=0.104 Sum_probs=90.6
Q ss_pred CEeEEEEcCCCCEEEEEeCCCcEEEEEccCCeEEEEeecCCCceEEEEeCCCCeEEEEcCCCeEEEEEcCCCCCCccccc
Q 047325 156 AVSCMSLDQDCGLLYTASWDRTFKVWRISDSKCLESVSAHDDAVNSVVSSSEGLIFTGSADGTVKVWKREQHGKGTKHSL 235 (368)
Q Consensus 156 ~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~ 235 (368)
.-..++-.|||..-+++...+.|--.|..+|+....--+....-..+...||+-.........|.-.|.++... .++
T Consensus 63 ap~dvapapdG~VWft~qg~gaiGhLdP~tGev~~ypLg~Ga~Phgiv~gpdg~~Witd~~~aI~R~dpkt~ev-t~f-- 139 (353)
T COG4257 63 APFDVAPAPDGAVWFTAQGTGAIGHLDPATGEVETYPLGSGASPHGIVVGPDGSAWITDTGLAIGRLDPKTLEV-TRF-- 139 (353)
T ss_pred CccccccCCCCceEEecCccccceecCCCCCceEEEecCCCCCCceEEECCCCCeeEecCcceeEEecCcccce-EEe--
Confidence 34567888899888888888999999999998776555555666778888988222222222566666544321 111
Q ss_pred ceeeccccccEEEEEEcCCCCEEEEecC---------CCcEEEEeCCCccccceeeeccceEEEEEEeCCCEEEEeeCCC
Q 047325 236 AQTLLKQECAVTALVVSSSRSIVYCGSS---------DGLVNFWEREKQLSHGGVLKGHKLAVLCLAAAGKLVFSGSADK 306 (368)
Q Consensus 236 ~~~~~~~~~~i~~~~~~~~~~~l~~~~~---------dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg 306 (368)
...............|.+.|++-+++.. .+.|++|+...+. ...-+|..|+|..-++.-.++
T Consensus 140 ~lp~~~a~~nlet~vfD~~G~lWFt~q~G~yGrLdPa~~~i~vfpaPqG~---------gpyGi~atpdGsvwyaslagn 210 (353)
T COG4257 140 PLPLEHADANLETAVFDPWGNLWFTGQIGAYGRLDPARNVISVFPAPQGG---------GPYGICATPDGSVWYASLAGN 210 (353)
T ss_pred ecccccCCCcccceeeCCCccEEEeeccccceecCcccCceeeeccCCCC---------CCcceEECCCCcEEEEecccc
Confidence 1112334566788899999998888752 1335555543222 222356677777766655565
Q ss_pred eEEEEec
Q 047325 307 TICVWRR 313 (368)
Q Consensus 307 ~i~iw~~ 313 (368)
.|-.-|.
T Consensus 211 aiaridp 217 (353)
T COG4257 211 AIARIDP 217 (353)
T ss_pred ceEEccc
Confidence 5555543
No 438
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=93.38 E-value=0.013 Score=49.89 Aligned_cols=138 Identities=13% Similarity=0.121 Sum_probs=88.1
Q ss_pred eEEEEcCCCCEEEEEeCCCcEEEEEccCCeEEEEeecCCCceEEEEeCCCC--eEEEEcCCCeEEEEEcCCCCCCccccc
Q 047325 158 SCMSLDQDCGLLYTASWDRTFKVWRISDSKCLESVSAHDDAVNSVVSSSEG--LIFTGSADGTVKVWKREQHGKGTKHSL 235 (368)
Q Consensus 158 ~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~--~l~~~~~dg~i~i~d~~~~~~~~~~~~ 235 (368)
....|.+.+.-++.++.+..+..||- .++...... ..+....++|..++ .++.+-..+.+.+||+.....
T Consensus 38 i~~~w~~e~~nlavaca~tiv~~YD~-agq~~le~n-~tg~aldm~wDkegdvlavlAek~~piylwd~n~eyt------ 109 (615)
T KOG2247|consen 38 IIHRWRPEGHNLAVACANTIVIYYDK-AGQVILELN-PTGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEYT------ 109 (615)
T ss_pred ceeeEecCCCceehhhhhhHHHhhhh-hcceecccC-CchhHhhhhhccccchhhhhhhcCCCeeechhhhhhH------
Confidence 34567777767888888889999994 455444443 34555677888877 566667789999999975421
Q ss_pred ceeec-cccccEEEEEEcCCCCEEEEecCCCcEEEEeCCCccccceeeeccceEEEEEEeC-CCEEEEeeCC
Q 047325 236 AQTLL-KQECAVTALVVSSSRSIVYCGSSDGLVNFWEREKQLSHGGVLKGHKLAVLCLAAA-GKLVFSGSAD 305 (368)
Q Consensus 236 ~~~~~-~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~~~d 305 (368)
+.+. +....-.-+.|++....++.+...|.+.+++....+... ....|..+++++... ..+.+.++.|
T Consensus 110 -qqLE~gg~~s~sll~wsKg~~el~ig~~~gn~viynhgtsR~ii-v~Gkh~RRgtq~av~lEd~vil~dcd 179 (615)
T KOG2247|consen 110 -QQLESGGTSSKSLLAWSKGTPELVIGNNAGNIVIYNHGTSRRII-VMGKHQRRGTQIAVTLEDYVILCDCD 179 (615)
T ss_pred -HHHhccCcchHHHHhhccCCccccccccccceEEEeccchhhhh-hhcccccceeEEEecccceeeecCcH
Confidence 1111 111112227789988999999999999999987654442 222366666665553 2333334333
No 439
>COG5276 Uncharacterized conserved protein [Function unknown]
Probab=93.30 E-value=3.7 Score=33.30 Aligned_cols=238 Identities=9% Similarity=0.096 Sum_probs=129.3
Q ss_pred eeeccCcCCcEEEEEecCCEEEEccCCCcEEEEcCCcce-----ecccCCCCCeeEEEEeCCEEEEEeCCCeEEEEeecC
Q 047325 37 IGSLVREEGHIYSLAASKDLLYTGSDSKNIRVWKNLKEF-----CGFKASSGLVKAIVISGEKIFTGHQDGKIRVWKISP 111 (368)
Q Consensus 37 ~~~~~~h~~~i~~~~~~~~~l~s~~~dg~i~iw~~~~~~-----~~~~~~~~~v~~~~~~~~~l~s~~~dg~i~vw~~~~ 111 (368)
...+..-.+.-.++..+|++...+..|.-.-+.|+..+. -.+......-..++.+|++-..+..|+-+.+-|+.+
T Consensus 121 ~~~~lnt~gyaygv~vsGn~aYVadlddgfLivdvsdpssP~lagrya~~~~d~~~v~ISGn~AYvA~~d~GL~ivDVSn 200 (370)
T COG5276 121 LIGFLNTDGYAYGVYVSGNYAYVADLDDGFLIVDVSDPSSPQLAGRYALPGGDTHDVAISGNYAYVAWRDGGLTIVDVSN 200 (370)
T ss_pred eeccccCCceEEEEEecCCEEEEeeccCcEEEEECCCCCCceeeeeeccCCCCceeEEEecCeEEEEEeCCCeEEEEccC
Confidence 333333346678888999988877744445577875431 123344455578888999999999999999999987
Q ss_pred CCccccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcCCCCEEEEEeCCCcEEEEEccCCeEEEE
Q 047325 112 KNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCGLLYTASWDRTFKVWRISDSKCLES 191 (368)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~ 191 (368)
.........- .....+.++..+++..+++.. +.-+.+-|....+....
T Consensus 201 p~sPvli~~~------------------------------n~g~g~~sv~vsdnr~y~vvy--~egvlivd~s~~ssp~~ 248 (370)
T COG5276 201 PHSPVLIGSY------------------------------NTGPGTYSVSVSDNRAYLVVY--DEGVLIVDVSGPSSPTV 248 (370)
T ss_pred CCCCeEEEEE------------------------------ecCCceEEEEecCCeeEEEEc--ccceEEEecCCCCCceE
Confidence 6532211100 012256777777765555544 34577778766553333
Q ss_pred eec-CCCceEEE---EeCCCCeEEEEcCCCeEEEEEcCCCCCCcccccceeeccccccEEEEEEcCCCCEEEEecCCCcE
Q 047325 192 VSA-HDDAVNSV---VSSSEGLIFTGSADGTVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSSSRSIVYCGSSDGLV 267 (368)
Q Consensus 192 ~~~-~~~~v~~~---~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i 267 (368)
+.. ....+.++ .. ++.+......+..+.+-|+..... ......+......-..+... ++++..+..+ ..
T Consensus 249 ~gsyet~~p~~~s~v~V-s~~~~Yvadga~gl~~idisnp~s---pfl~ss~~t~g~~a~gi~ay--~~y~yiadkn-~g 321 (370)
T COG5276 249 FGSYETSNPVSISTVPV-SGEYAYVADGAKGLPIIDISNPPS---PFLSSSLDTAGYQAAGIRAY--GNYNYIADKN-TG 321 (370)
T ss_pred eeccccCCcccccceec-ccceeeeeccccCceeEeccCCCC---CchhccccCCCccccceEEe--cCeeEeccCC-ce
Confidence 321 11222232 32 333566666667777778765532 11111222122223333332 3445444444 34
Q ss_pred EEEeCCCcccccee-eeccceEEEEEEeCCCEEEEeeCCCeEEEEec
Q 047325 268 NFWEREKQLSHGGV-LKGHKLAVLCLAAAGKLVFSGSADKTICVWRR 313 (368)
Q Consensus 268 ~i~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~ 313 (368)
.+-+....+..... .........+++.+.+.+.+...++-+.||+.
T Consensus 322 ~vV~~s~~s~m~~~~g~~ti~~s~~v~~~~q~~y~~d~~~gl~i~~~ 368 (370)
T COG5276 322 AVVDASPPSMMDKRPGRPTIGQSCDVSVDTQIIYSTDYNGGLSIIEY 368 (370)
T ss_pred EEEeCCChhhcccccCcceEeeecceEEEeeEEEEeecCCCEEEEEe
Confidence 44454432221111 11112223445556668888888999999864
No 440
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=92.78 E-value=5.6 Score=33.96 Aligned_cols=67 Identities=12% Similarity=0.101 Sum_probs=34.7
Q ss_pred EEcCCCCEEEEEeC-C--CcEEEEEccCCeEEEEeecCCCceEEEEeCCCC-eEEEEcCCCeEEEEEcCCC
Q 047325 161 SLDQDCGLLYTASW-D--RTFKVWRISDSKCLESVSAHDDAVNSVVSSSEG-LIFTGSADGTVKVWKREQH 227 (368)
Q Consensus 161 ~~~~~~~~l~~~~~-d--~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~dg~i~i~d~~~~ 227 (368)
+|.++|+.|+-++. | ..+.+.|+.+++..+.-.+.........+++++ .++-...+..|+-.|+++.
T Consensus 42 ~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~QLTdg~g~~~~g~~~s~~~~~~~Yv~~~~~l~~vdL~T~ 112 (386)
T PF14583_consen 42 CFTDDGRKLLFASDFDGNRNLYLLDLATGEITQLTDGPGDNTFGGFLSPDDRALYYVKNGRSLRRVDLDTL 112 (386)
T ss_dssp -B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE---SS-B-TTT-EE-TTSSEEEEEETTTEEEEEETTT-
T ss_pred CcCCCCCEEEEEeccCCCcceEEEEcccCEEEECccCCCCCccceEEecCCCeEEEEECCCeEEEEECCcC
Confidence 56778876655554 4 467888999988776555432323344555666 5444445568888888875
No 441
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=92.69 E-value=3.1 Score=40.87 Aligned_cols=82 Identities=20% Similarity=0.311 Sum_probs=54.8
Q ss_pred ecCCCceEEEEeCCCCeEEEEcCCCeEEEEEcCCCCC--C--ccc------------ccceeec-cccccEEEEEEcCCC
Q 047325 193 SAHDDAVNSVVSSSEGLIFTGSADGTVKVWKREQHGK--G--TKH------------SLAQTLL-KQECAVTALVVSSSR 255 (368)
Q Consensus 193 ~~~~~~v~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~--~--~~~------------~~~~~~~-~~~~~i~~~~~~~~~ 255 (368)
......|.|+....+|.++.++.||.|+-.-...... . ... +....+. .+..+|..+......
T Consensus 175 ~~dg~~V~~I~~t~nGRIF~~G~dg~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~~~~~dpI~qi~ID~SR 254 (1311)
T KOG1900|consen 175 SVDGVSVNCITYTENGRIFFAGRDGNLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVPGSSKDPIRQITIDNSR 254 (1311)
T ss_pred ecCCceEEEEEeccCCcEEEeecCCCEEEEEEeccCchhhcccccccCchhHHHHhhhhhhcCCCCCCCcceeeEecccc
Confidence 3345678999988889888888888544322221110 0 000 0011222 456799999999988
Q ss_pred CEEEEecCCCcEEEEeCCC
Q 047325 256 SIVYCGSSDGLVNFWEREK 274 (368)
Q Consensus 256 ~~l~~~~~dg~i~i~d~~~ 274 (368)
+.+.+-++.|+|.+||+..
T Consensus 255 ~IlY~lsek~~v~~Y~i~~ 273 (1311)
T KOG1900|consen 255 NILYVLSEKGTVSAYDIGG 273 (1311)
T ss_pred ceeeeeccCceEEEEEccC
Confidence 9999999999999999875
No 442
>PRK10115 protease 2; Provisional
Probab=92.55 E-value=9.6 Score=36.06 Aligned_cols=112 Identities=11% Similarity=0.069 Sum_probs=61.9
Q ss_pred CEeEEEEcCCCCEEEEEeCC-----CcEEEEEccCCeEEEEeecCCCceEEEEeCCCC--eEEEEcCC-----CeEEEEE
Q 047325 156 AVSCMSLDQDCGLLYTASWD-----RTFKVWRISDSKCLESVSAHDDAVNSVVSSSEG--LIFTGSAD-----GTVKVWK 223 (368)
Q Consensus 156 ~v~~~~~~~~~~~l~~~~~d-----~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~--~l~~~~~d-----g~i~i~d 223 (368)
.+..+.++|++++|+.+... ..|++.|+.+++.+...-... . ..++|.+++ .+++...+ ..|+.++
T Consensus 128 ~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i~~~-~-~~~~w~~D~~~~~y~~~~~~~~~~~~v~~h~ 205 (686)
T PRK10115 128 TLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPELLDNV-E-PSFVWANDSWTFYYVRKHPVTLLPYQVWRHT 205 (686)
T ss_pred EEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCccccCc-c-eEEEEeeCCCEEEEEEecCCCCCCCEEEEEE
Confidence 46678899999988766432 268899998886432221111 1 458999887 44443322 3677777
Q ss_pred cCCCCCCcccccceeeccccccEE-EEEEcCCCCEEEEecC---CCcEEEEeCC
Q 047325 224 REQHGKGTKHSLAQTLLKQECAVT-ALVVSSSRSIVYCGSS---DGLVNFWERE 273 (368)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~i~-~~~~~~~~~~l~~~~~---dg~i~i~d~~ 273 (368)
+.+... ....+ +........ ....+.++++++..+. ++.+.+++..
T Consensus 206 lgt~~~--~d~lv--~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~ 255 (686)
T PRK10115 206 IGTPAS--QDELV--YEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDAE 255 (686)
T ss_pred CCCChh--HCeEE--EeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEECc
Confidence 765421 11112 222222222 3334447776665443 3578888853
No 443
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=92.23 E-value=5.4 Score=34.57 Aligned_cols=63 Identities=11% Similarity=0.141 Sum_probs=30.2
Q ss_pred CceEEEEeCCCC--eEEEEcCCCeEEEEEcCCCCCCccccccee-e---------------ccccccEEEEEEcCCCCEE
Q 047325 197 DAVNSVVSSSEG--LIFTGSADGTVKVWKREQHGKGTKHSLAQT-L---------------LKQECAVTALVVSSSRSIV 258 (368)
Q Consensus 197 ~~v~~~~~~~~~--~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~-~---------------~~~~~~i~~~~~~~~~~~l 258 (368)
.-|+.|..+.|. +.+++-.+|.|+.||+...... +..-. . ..-.+....+..|.||+.|
T Consensus 312 ~LitDI~iSlDDrfLYvs~W~~GdvrqYDISDP~~P---kl~gqv~lGG~~~~~~~~~v~g~~l~GgPqMvqlS~DGkRl 388 (461)
T PF05694_consen 312 PLITDILISLDDRFLYVSNWLHGDVRQYDISDPFNP---KLVGQVFLGGSIRKGDHPVVKGKRLRGGPQMVQLSLDGKRL 388 (461)
T ss_dssp -----EEE-TTS-EEEEEETTTTEEEEEE-SSTTS----EEEEEEE-BTTTT-B--TTS------S----EEE-TTSSEE
T ss_pred CceEeEEEccCCCEEEEEcccCCcEEEEecCCCCCC---cEEeEEEECcEeccCCCccccccccCCCCCeEEEccCCeEE
Confidence 457888898888 4556666999999999876431 11111 0 0112345667777788777
Q ss_pred EEec
Q 047325 259 YCGS 262 (368)
Q Consensus 259 ~~~~ 262 (368)
...+
T Consensus 389 YvTn 392 (461)
T PF05694_consen 389 YVTN 392 (461)
T ss_dssp EEE-
T ss_pred EEEe
Confidence 6654
No 444
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=92.21 E-value=2.8 Score=36.73 Aligned_cols=127 Identities=13% Similarity=0.084 Sum_probs=71.4
Q ss_pred eEEEEcCCCeEEEEEcCCCCCCcccccceeeccccccEEEEEEcCCC--------CEEEEecCCCcEEEEeCCC-ccccc
Q 047325 209 LIFTGSADGTVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSSSR--------SIVYCGSSDGLVNFWEREK-QLSHG 279 (368)
Q Consensus 209 ~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~--------~~l~~~~~dg~i~i~d~~~-~~~~~ 279 (368)
.+..|+....++-.|+..+ ..+..+..+... -+.|.|.. +.|+ |-++..|.-.|.+- +..+.
T Consensus 482 i~~dg~~~~kLykmDIErG------kvveeW~~~ddv--vVqy~p~~kf~qmt~eqtlv-GlS~~svFrIDPR~~gNKi~ 552 (776)
T COG5167 482 IYLDGGERDKLYKMDIERG------KVVEEWDLKDDV--VVQYNPYFKFQQMTDEQTLV-GLSDYSVFRIDPRARGNKIK 552 (776)
T ss_pred EEecCCCcccceeeecccc------eeeeEeecCCcc--eeecCCchhHHhcCccceEE-eecccceEEecccccCCcee
Confidence 4445555566666677654 244455545443 45666632 2333 44445555556542 21111
Q ss_pred eee----eccceEEEEEEeCCCEEEEeeCCCeEEEEecCCCceeeeEeeeccccCeeEEEEecCCeeeecC
Q 047325 280 GVL----KGHKLAVLCLAAAGKLVFSGSADKTICVWRRDGAIHTCLSVLTGHTGPVKCLAVEEDRDSSSST 346 (368)
Q Consensus 280 ~~~----~~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~ 346 (368)
... .+.........-...++++|+..|-|++||--.. .....+.+....|..+..+.+|.++...
T Consensus 553 v~esKdY~tKn~Fss~~tTesGyIa~as~kGDirLyDRig~--rAKtalP~lG~aIk~idvta~Gk~ilaT 621 (776)
T COG5167 553 VVESKDYKTKNKFSSGMTTESGYIAAASRKGDIRLYDRIGK--RAKTALPGLGDAIKHIDVTANGKHILAT 621 (776)
T ss_pred eeeehhccccccccccccccCceEEEecCCCceeeehhhcc--hhhhcCcccccceeeeEeecCCcEEEEe
Confidence 111 1111111223335789999999999999985433 3334566778889999999999865433
No 445
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=91.90 E-value=12 Score=35.53 Aligned_cols=82 Identities=16% Similarity=0.145 Sum_probs=50.9
Q ss_pred CceEEEEeCCCC-eEEEEcCCCeEEEEEcCCCCC------Cccccccee--------eccccccEEEEEEcCC---CCEE
Q 047325 197 DAVNSVVSSSEG-LIFTGSADGTVKVWKREQHGK------GTKHSLAQT--------LLKQECAVTALVVSSS---RSIV 258 (368)
Q Consensus 197 ~~v~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~------~~~~~~~~~--------~~~~~~~i~~~~~~~~---~~~l 258 (368)
-.|..+..+++| .++..+..|...+.=.+..+. +......+. .......|..+.|+|. +..|
T Consensus 85 f~v~~i~~n~~g~~lal~G~~~v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~~l 164 (717)
T PF10168_consen 85 FEVHQISLNPTGSLLALVGPRGVVVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDSHL 164 (717)
T ss_pred eeEEEEEECCCCCEEEEEcCCcEEEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCCeE
Confidence 467888999999 677767655443332221110 000001111 1134467899999995 5789
Q ss_pred EEecCCCcEEEEeCCCcccc
Q 047325 259 YCGSSDGLVNFWEREKQLSH 278 (368)
Q Consensus 259 ~~~~~dg~i~i~d~~~~~~~ 278 (368)
+.-..|+++++||+.....+
T Consensus 165 ~vLtsdn~lR~y~~~~~~~p 184 (717)
T PF10168_consen 165 VVLTSDNTLRLYDISDPQHP 184 (717)
T ss_pred EEEecCCEEEEEecCCCCCC
Confidence 99999999999998754433
No 446
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=91.72 E-value=8.4 Score=33.58 Aligned_cols=73 Identities=16% Similarity=0.141 Sum_probs=48.2
Q ss_pred cccEEEEEEcCCCCEEEEecCCCcEEEEeCCCccccceeeeccceEEEEEEe----CC----------------C-EEEE
Q 047325 243 ECAVTALVVSSSRSIVYCGSSDGLVNFWEREKQLSHGGVLKGHKLAVLCLAA----AG----------------K-LVFS 301 (368)
Q Consensus 243 ~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~----~~----------------~-~l~~ 301 (368)
...+.+++.+|++++.++...=|+|.++|+.+.... +..++-...-+.|-. .. . +++-
T Consensus 307 ~R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vv-rmWKGYRdAqc~wi~~~~~~~~~~~~~~~~~~~~~~~l~LvIy 385 (415)
T PF14655_consen 307 KREGESICLSPSGRLAAVTDSLGRVLLIDVARGIVV-RMWKGYRDAQCGWIEVPEEGDRDRSNSNSPKSSSRFALFLVIY 385 (415)
T ss_pred CceEEEEEECCCCCEEEEEcCCCcEEEEECCCChhh-hhhccCccceEEEEEeecccccccccccccCCCCcceEEEEEE
Confidence 345888999999999999888899999999876554 344444333322221 11 1 2333
Q ss_pred eeCCCeEEEEecCCC
Q 047325 302 GSADKTICVWRRDGA 316 (368)
Q Consensus 302 ~~~dg~i~iw~~~~~ 316 (368)
+-.-|.|.||.+..+
T Consensus 386 aprRg~lEvW~~~~g 400 (415)
T PF14655_consen 386 APRRGILEVWSMRQG 400 (415)
T ss_pred eccCCeEEEEecCCC
Confidence 455778888877665
No 447
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=91.29 E-value=4.8 Score=31.11 Aligned_cols=131 Identities=16% Similarity=0.267 Sum_probs=66.4
Q ss_pred EEEEecC-CEEEEccCCCcEEEEcCCcc----eecccCCCCCeeEEEEe--CCEEEEEeCCC------eEEEE-eecCCC
Q 047325 48 YSLAASK-DLLYTGSDSKNIRVWKNLKE----FCGFKASSGLVKAIVIS--GEKIFTGHQDG------KIRVW-KISPKN 113 (368)
Q Consensus 48 ~~~~~~~-~~l~s~~~dg~i~iw~~~~~----~~~~~~~~~~v~~~~~~--~~~l~s~~~dg------~i~vw-~~~~~~ 113 (368)
.++...| +.|+.+.....|.+|++.++ +..|..- +.|..+.++ |+||+|--.+. .+|+| +.+...
T Consensus 21 ~~~c~~g~d~Lfva~~g~~Vev~~l~~~~~~~~~~F~Tv-~~V~~l~y~~~GDYlvTlE~k~~~~~~~fvR~Y~NWr~~~ 99 (215)
T PF14761_consen 21 TAVCCGGPDALFVAASGCKVEVYDLEQEECPLLCTFSTV-GRVLQLVYSEAGDYLVTLEEKNKRSPVDFVRAYFNWRSQK 99 (215)
T ss_pred ceeeccCCceEEEEcCCCEEEEEEcccCCCceeEEEcch-hheeEEEeccccceEEEEEeecCCccceEEEEEEEhhhhc
Confidence 3455556 65544456678999998733 3344443 778899988 99999875432 45665 222210
Q ss_pred ccccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcCCCCEEEEEeCCCcEEEEEccCC
Q 047325 114 QSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCGLLYTASWDRTFKVWRISDS 186 (368)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~ 186 (368)
. ...+...........+...-.....-..+-..-...+.+++-.|-..-|++|+. +.+.+|.+...
T Consensus 100 ~------~~~~v~vRiaG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG~LlVg~~-~~l~lf~l~~~ 165 (215)
T PF14761_consen 100 E------ENSPVRVRIAGHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPVTGNLLVGCG-NKLVLFTLKYQ 165 (215)
T ss_pred c------cCCcEEEEEcccccccCCCCccccceEEEEecCCCCCCEEEecCCCCCEEEEcC-CEEEEEEEEEE
Confidence 0 000000000000000000000000001111224567889999885555666664 68999987543
No 448
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=91.03 E-value=9.7 Score=32.98 Aligned_cols=39 Identities=8% Similarity=0.014 Sum_probs=18.9
Q ss_pred EEEEeCCCccccc-eeeeccceEEEEEEeCCCEEEEeeCC
Q 047325 267 VNFWEREKQLSHG-GVLKGHKLAVLCLAAAGKLVFSGSAD 305 (368)
Q Consensus 267 i~i~d~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~d 305 (368)
+.+||.++.+-.. ..+........++..++++++.|+..
T Consensus 314 ~e~yd~~~~~W~~~~~lp~~r~~~~av~~~~~iyv~GG~~ 353 (376)
T PRK14131 314 DEIYALVNGKWQKVGELPQGLAYGVSVSWNNGVLLIGGET 353 (376)
T ss_pred hheEEecCCcccccCcCCCCccceEEEEeCCEEEEEcCCC
Confidence 4578877543211 11111111223455677777777754
No 449
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=90.87 E-value=1.5 Score=23.43 Aligned_cols=31 Identities=19% Similarity=0.280 Sum_probs=23.9
Q ss_pred CCCCEEEEEe-CCCcEEEEEccCCeEEEEeec
Q 047325 164 QDCGLLYTAS-WDRTFKVWRISDSKCLESVSA 194 (368)
Q Consensus 164 ~~~~~l~~~~-~d~~i~iwd~~~~~~~~~~~~ 194 (368)
|++++|+++. .++.|.++|..+++.+..+..
T Consensus 1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~i~v 32 (42)
T TIGR02276 1 PDGTKLYVTNSGSNTVSVIDTATNKVIATIPV 32 (42)
T ss_pred CCCCEEEEEeCCCCEEEEEECCCCeEEEEEEC
Confidence 4667666655 578999999999988887765
No 450
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=90.50 E-value=11 Score=32.79 Aligned_cols=136 Identities=10% Similarity=0.054 Sum_probs=67.7
Q ss_pred eEEEEeCCCCeEEEEcCCCeEE-EEEcCCCCCCcccccceeeccccccEEEEEEcCCCCEEEEecCCCcEEEEeCCCccc
Q 047325 199 VNSVVSSSEGLIFTGSADGTVK-VWKREQHGKGTKHSLAQTLLKQECAVTALVVSSSRSIVYCGSSDGLVNFWEREKQLS 277 (368)
Q Consensus 199 v~~~~~~~~~~l~~~~~dg~i~-i~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~ 277 (368)
...+...+++.++..+..|.+. -||--.. .. ..........+..+.+.+++..++++ ..|.+..- ...++.
T Consensus 241 f~~v~~~~dG~~~~vg~~G~~~~s~d~G~~----~W--~~~~~~~~~~l~~v~~~~dg~l~l~g-~~G~l~~S-~d~G~~ 312 (398)
T PLN00033 241 FSTVNRSPDGDYVAVSSRGNFYLTWEPGQP----YW--QPHNRASARRIQNMGWRADGGLWLLT-RGGGLYVS-KGTGLT 312 (398)
T ss_pred eeeEEEcCCCCEEEEECCccEEEecCCCCc----ce--EEecCCCccceeeeeEcCCCCEEEEe-CCceEEEe-cCCCCc
Confidence 3445566777444444455433 3332110 00 11122334568899999998887766 45655442 222221
Q ss_pred ----cceeee-c-cceEEEEEEe-CCCEEEEeeCCCeEEEEecCCCceeeeEeeeccccCeeEEEEecCCee
Q 047325 278 ----HGGVLK-G-HKLAVLCLAA-AGKLVFSGSADKTICVWRRDGAIHTCLSVLTGHTGPVKCLAVEEDRDS 342 (368)
Q Consensus 278 ----~~~~~~-~-~~~~~~~~~~-~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~ 342 (368)
...... . ....++.+.+ +.+.++.++.+|.+....-.....+....-..-....+.+.|.++++-
T Consensus 313 ~~~~~f~~~~~~~~~~~l~~v~~~~d~~~~a~G~~G~v~~s~D~G~tW~~~~~~~~~~~~ly~v~f~~~~~g 384 (398)
T PLN00033 313 EEDFDFEEADIKSRGFGILDVGYRSKKEAWAAGGSGILLRSTDGGKSWKRDKGADNIAANLYSVKFFDDKKG 384 (398)
T ss_pred ccccceeecccCCCCcceEEEEEcCCCcEEEEECCCcEEEeCCCCcceeEccccCCCCcceeEEEEcCCCce
Confidence 001111 1 1123455544 344556666788877764333333333222233456889999887763
No 451
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=90.47 E-value=8.2 Score=31.22 Aligned_cols=111 Identities=18% Similarity=0.122 Sum_probs=66.0
Q ss_pred CEeEEEEcCCCCEEEEEeCCCcEEEEE-ccCCeEE-EEeecC--CCceEEEEeCCCC-eEEEE---cCCCeEEEEEcCCC
Q 047325 156 AVSCMSLDQDCGLLYTASWDRTFKVWR-ISDSKCL-ESVSAH--DDAVNSVVSSSEG-LIFTG---SADGTVKVWKREQH 227 (368)
Q Consensus 156 ~v~~~~~~~~~~~l~~~~~d~~i~iwd-~~~~~~~-~~~~~~--~~~v~~~~~~~~~-~l~~~---~~dg~i~i~d~~~~ 227 (368)
.+..-.|++++...+....+...+++. ..+++.. ..+... ...|..+.++||| .++.. ..++.|.+--+...
T Consensus 67 ~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~~~~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~ 146 (253)
T PF10647_consen 67 SLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGTGEPVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRD 146 (253)
T ss_pred ccccccccCCCCEEEEEcCCCceEEEEecCCCcceeEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeC
Confidence 556678888877666666566666663 3333222 122211 1289999999999 43333 34678888766543
Q ss_pred CCC---cccccceeeccccccEEEEEEcCCCCEEEEecCCCc
Q 047325 228 GKG---TKHSLAQTLLKQECAVTALVVSSSRSIVYCGSSDGL 266 (368)
Q Consensus 228 ~~~---~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~ 266 (368)
..+ ...............+..+.|.+++.+++.+...+.
T Consensus 147 ~~g~~~~l~~~~~~~~~~~~~v~~v~W~~~~~L~V~~~~~~~ 188 (253)
T PF10647_consen 147 GDGVPRRLTGPRRVAPPLLSDVTDVAWSDDSTLVVLGRSAGG 188 (253)
T ss_pred CCCCcceeccceEecccccCcceeeeecCCCEEEEEeCCCCC
Confidence 332 111112222233567899999999988777665543
No 452
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=90.01 E-value=13 Score=32.63 Aligned_cols=146 Identities=16% Similarity=0.203 Sum_probs=82.5
Q ss_pred CCEEEEEeCCCeEEEEeecCCCccccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcC-----CC
Q 047325 92 GEKIFTGHQDGKIRVWKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQ-----DC 166 (368)
Q Consensus 92 ~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-----~~ 166 (368)
.+.+++|+..|.++||+.......... ...-..-..+|..+..-+ +.
T Consensus 37 ~d~IivGS~~G~LrIy~P~~~~~~~~~----------------------------lllE~~l~~PILqv~~G~F~s~~~~ 88 (418)
T PF14727_consen 37 SDKIIVGSYSGILRIYDPSGNEFQPED----------------------------LLLETQLKDPILQVECGKFVSGSED 88 (418)
T ss_pred ccEEEEeccccEEEEEccCCCCCCCcc----------------------------EEEEEecCCcEEEEEeccccCCCCc
Confidence 358999999999999998544321100 001111345666665432 22
Q ss_pred CEEEEEeCCCcEEEEEccC--Ce-------EEEEeecCC--CceEEEEeCC----C--CeEEEEcCCCeEEEEEcCCCCC
Q 047325 167 GLLYTASWDRTFKVWRISD--SK-------CLESVSAHD--DAVNSVVSSS----E--GLIFTGSADGTVKVWKREQHGK 229 (368)
Q Consensus 167 ~~l~~~~~d~~i~iwd~~~--~~-------~~~~~~~~~--~~v~~~~~~~----~--~~l~~~~~dg~i~i~d~~~~~~ 229 (368)
..|++ -.-..+.+|.+.. |. .+..+..|. .....++..| . ..+.+-+.||.+.+|+-+..
T Consensus 89 ~~LaV-LhP~kl~vY~v~~~~g~~~~g~~~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~-- 165 (418)
T PF14727_consen 89 LQLAV-LHPRKLSVYSVSLVDGTVEHGNQYQLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESF-- 165 (418)
T ss_pred ceEEE-ecCCEEEEEEEEecCCCcccCcEEEEEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcE--
Confidence 23443 3456677777632 11 122222232 2223333322 2 27888999999999998643
Q ss_pred CcccccceeeccccccEEEEEEcCCCCEEEEecCCCcEEEEeCC
Q 047325 230 GTKHSLAQTLLKQECAVTALVVSSSRSIVYCGSSDGLVNFWERE 273 (368)
Q Consensus 230 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~ 273 (368)
.........--.-.++|.+..+.|++++.+..+.-|...
T Consensus 166 -----~f~~~lp~~llPgPl~Y~~~tDsfvt~sss~~l~~Yky~ 204 (418)
T PF14727_consen 166 -----AFSRFLPDFLLPGPLCYCPRTDSFVTASSSWTLECYKYQ 204 (418)
T ss_pred -----EEEEEcCCCCCCcCeEEeecCCEEEEecCceeEEEecHH
Confidence 111111112223456788888899999998899988753
No 453
>COG3292 Predicted periplasmic ligand-binding sensor domain [Signal transduction mechanisms]
Probab=89.92 E-value=3.2 Score=36.94 Aligned_cols=138 Identities=17% Similarity=0.180 Sum_probs=72.7
Q ss_pred CCCceEEEEeCCCCeEEEEcCCCeEEEEEcCCCCCCcccccceeec-cccccEEEEEEcCCCCEEEEecCCCcEEEEeCC
Q 047325 195 HDDAVNSVVSSSEGLIFTGSADGTVKVWKREQHGKGTKHSLAQTLL-KQECAVTALVVSSSRSIVYCGSSDGLVNFWERE 273 (368)
Q Consensus 195 ~~~~v~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~ 273 (368)
...+|..+.+..+|.+.+|+.||- ..||....+ ...... ....+|..+..+-++ .|..|+.+| +++.+.+
T Consensus 163 ~d~~V~aLv~D~~g~lWvgT~dGL-~~fd~~~gk------alql~s~~~dk~I~al~~d~qg-~LWVGTdqG-v~~~e~~ 233 (671)
T COG3292 163 KDTPVVALVFDANGRLWVGTPDGL-SYFDAGRGK------ALQLASPPLDKAINALIADVQG-RLWVGTDQG-VYLQEAE 233 (671)
T ss_pred cCccceeeeeeccCcEEEecCCcc-eEEccccce------EEEcCCCcchhhHHHHHHHhcC-cEEEEeccc-eEEEchh
Confidence 356788888888888899998874 455544321 122111 222455555555444 567777777 7887776
Q ss_pred CccccceeeeccceEEEEEEeC-CCEEEEeeCCCeEEEEecCCCceeeeEeeeccccCeeEEEEecCCe
Q 047325 274 KQLSHGGVLKGHKLAVLCLAAA-GKLVFSGSADKTICVWRRDGAIHTCLSVLTGHTGPVKCLAVEEDRD 341 (368)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~ 341 (368)
..........-....+..+..| ...+..|++.|..+.---+.+-..+.....---+.|+++....+|.
T Consensus 234 G~~~sn~~~~lp~~~I~ll~qD~qG~lWiGTenGl~r~~l~rq~Lq~~~~~~~l~~S~vnsL~~D~dGs 302 (671)
T COG3292 234 GWRASNWGPMLPSGNILLLVQDAQGELWIGTENGLWRTRLPRQGLQIPLSKMHLGVSTVNSLWLDTDGS 302 (671)
T ss_pred hccccccCCCCcchheeeeecccCCCEEEeecccceeEecCCCCccccccccCCccccccceeeccCCC
Confidence 5332222222233445555444 3467778877755332111111111111111123567777777776
No 454
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=89.87 E-value=2.7 Score=38.47 Aligned_cols=37 Identities=24% Similarity=0.683 Sum_probs=28.3
Q ss_pred CEeEEEEcC----CCCEEEEEeCCCcEEEEEccCCeEEEEe
Q 047325 156 AVSCMSLDQ----DCGLLYTASWDRTFKVWRISDSKCLESV 192 (368)
Q Consensus 156 ~v~~~~~~~----~~~~l~~~~~d~~i~iwd~~~~~~~~~~ 192 (368)
.+..++++. +..++++.+.|+.+++||+.+++++...
T Consensus 216 ~~~~~~~~~~~~~~~~~l~tl~~D~~LRiW~l~t~~~~~~~ 256 (547)
T PF11715_consen 216 VAASLAVSSSEINDDTFLFTLSRDHTLRIWSLETGQCLATI 256 (547)
T ss_dssp -EEEEEE-----ETTTEEEEEETTSEEEEEETTTTCEEEEE
T ss_pred ccceEEEecceeCCCCEEEEEeCCCeEEEEECCCCeEEEEe
Confidence 445555555 6779999999999999999999996655
No 455
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=89.85 E-value=9.2 Score=30.84 Aligned_cols=158 Identities=8% Similarity=-0.064 Sum_probs=81.7
Q ss_pred CeeEEEE-e-CCEEEEEeCCC--eEEEEeecCCCccccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeE
Q 047325 84 LVKAIVI-S-GEKIFTGHQDG--KIRVWKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSC 159 (368)
Q Consensus 84 ~v~~~~~-~-~~~l~s~~~dg--~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 159 (368)
-...+.| . +..+-+.+.-| .|+.+|+.+++.......... ----.
T Consensus 46 FTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~-------------------------------~FgEG 94 (264)
T PF05096_consen 46 FTQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPR-------------------------------YFGEG 94 (264)
T ss_dssp EEEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT---------------------------------EEE
T ss_pred cCccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCcc-------------------------------cccee
Confidence 3456777 4 44555666666 688999988875433332211 01112
Q ss_pred EEEcCCCCEEEEEeCCCcEEEEEccCCeEEEEeecCCCceEEEEeCCCCeEEEEcCCCeEEEEEcCCCCCCcccccceee
Q 047325 160 MSLDQDCGLLYTASWDRTFKVWRISDSKCLESVSAHDDAVNSVVSSSEGLIFTGSADGTVKVWKREQHGKGTKHSLAQTL 239 (368)
Q Consensus 160 ~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~ 239 (368)
+....+ +...-.=.++...+||..+.+.+.++.-. +.=..++.. +..|+.......|+++|..+...... ..+..-
T Consensus 95 it~~~d-~l~qLTWk~~~~f~yd~~tl~~~~~~~y~-~EGWGLt~d-g~~Li~SDGS~~L~~~dP~~f~~~~~-i~V~~~ 170 (264)
T PF05096_consen 95 ITILGD-KLYQLTWKEGTGFVYDPNTLKKIGTFPYP-GEGWGLTSD-GKRLIMSDGSSRLYFLDPETFKEVRT-IQVTDN 170 (264)
T ss_dssp EEEETT-EEEEEESSSSEEEEEETTTTEEEEEEE-S-SS--EEEEC-SSCEEEE-SSSEEEEE-TTT-SEEEE-EE-EET
T ss_pred EEEECC-EEEEEEecCCeEEEEccccceEEEEEecC-CcceEEEcC-CCEEEEECCccceEEECCcccceEEE-EEEEEC
Confidence 333322 23333345789999999999999888743 444667632 22666666677899999875432111 011111
Q ss_pred ccccccEEEEEEcCCCCEEEEecCCCcEEEEeCCCccc
Q 047325 240 LKQECAVTALVVSSSRSIVYCGSSDGLVNFWEREKQLS 277 (368)
Q Consensus 240 ~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~ 277 (368)
...-..++.+.+. +|...|=.=....|...|..++..
T Consensus 171 g~pv~~LNELE~i-~G~IyANVW~td~I~~Idp~tG~V 207 (264)
T PF05096_consen 171 GRPVSNLNELEYI-NGKIYANVWQTDRIVRIDPETGKV 207 (264)
T ss_dssp TEE---EEEEEEE-TTEEEEEETTSSEEEEEETTT-BE
T ss_pred CEECCCcEeEEEE-cCEEEEEeCCCCeEEEEeCCCCeE
Confidence 1112345556665 455444444555666666666543
No 456
>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []). The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].
Probab=89.73 E-value=3.3 Score=31.17 Aligned_cols=29 Identities=21% Similarity=0.290 Sum_probs=24.3
Q ss_pred ceEEEEeCCCC-------eEEEEcCCCeEEEEEcCC
Q 047325 198 AVNSVVSSSEG-------LIFTGSADGTVKVWKREQ 226 (368)
Q Consensus 198 ~v~~~~~~~~~-------~l~~~~~dg~i~i~d~~~ 226 (368)
.+..++|+|.| .|++-+.++.|.+|....
T Consensus 87 ~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~ 122 (173)
T PF12657_consen 87 QVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPG 122 (173)
T ss_pred cEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCC
Confidence 67889999954 788899999999998753
No 457
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=89.49 E-value=12 Score=31.60 Aligned_cols=63 Identities=10% Similarity=0.099 Sum_probs=30.4
Q ss_pred CCCEEEEEeC-----CCcEEEEEccCCeE--EEEeecCCCceEEEEeCCCCeEEEEcCCC----eEEEEEcCCC
Q 047325 165 DCGLLYTASW-----DRTFKVWRISDSKC--LESVSAHDDAVNSVVSSSEGLIFTGSADG----TVKVWKREQH 227 (368)
Q Consensus 165 ~~~~l~~~~~-----d~~i~iwd~~~~~~--~~~~~~~~~~v~~~~~~~~~~l~~~~~dg----~i~i~d~~~~ 227 (368)
++++.+.|+. ...+..||+.+.+= +..+......-.+++...+.+.+.|+.++ .+..||+++.
T Consensus 123 ~~~iYv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~~yd~~~~ 196 (323)
T TIGR03548 123 DGTLYVGGGNRNGKPSNKSYLFNLETQEWFELPDFPGEPRVQPVCVKLQNELYVFGGGSNIAYTDGYKYSPKKN 196 (323)
T ss_pred CCEEEEEeCcCCCccCceEEEEcCCCCCeeECCCCCCCCCCcceEEEECCEEEEEcCCCCccccceEEEecCCC
Confidence 3455566653 23588888876542 22222111111122222333666666553 3567887754
No 458
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=89.37 E-value=5.9 Score=28.00 Aligned_cols=108 Identities=10% Similarity=0.143 Sum_probs=65.1
Q ss_pred EEEcCCCCEEEEEeCCCcEEEEEccCCe--------EEEEeecCCCceEEEEeCC---CC---eEEEEcCCCeEEEEEcC
Q 047325 160 MSLDQDCGLLYTASWDRTFKVWRISDSK--------CLESVSAHDDAVNSVVSSS---EG---LIFTGSADGTVKVWKRE 225 (368)
Q Consensus 160 ~~~~~~~~~l~~~~~d~~i~iwd~~~~~--------~~~~~~~~~~~v~~~~~~~---~~---~l~~~~~dg~i~i~d~~ 225 (368)
-.|......|++++.-|.|.|++..... .+..+. -...|++++-.+ +. .|+.|+ ...+..||+.
T Consensus 4 GkfDG~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LN-in~~italaaG~l~~~~~~D~LliGt-~t~llaYDV~ 81 (136)
T PF14781_consen 4 GKFDGVHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFLN-INQEITALAAGRLKPDDGRDCLLIGT-QTSLLAYDVE 81 (136)
T ss_pred EEeCCCceeEEEEecCCEEEEECCCccccccccccCceeEEE-CCCceEEEEEEecCCCCCcCEEEEec-cceEEEEEcc
Confidence 4566666678888888999999876432 334443 456677775433 22 666665 4579999998
Q ss_pred CCCCCcccccceeeccccccEEEEEEcC----CCCEEEEecCCCcEEEEeCCCccc
Q 047325 226 QHGKGTKHSLAQTLLKQECAVTALVVSS----SRSIVYCGSSDGLVNFWEREKQLS 277 (368)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~----~~~~l~~~~~dg~i~i~d~~~~~~ 277 (368)
.+.. ...+.-...+.++.+-. ...++++| .+..|.-||.+..+.
T Consensus 82 ~N~d-------~Fyke~~DGvn~i~~g~~~~~~~~l~ivG-Gncsi~Gfd~~G~e~ 129 (136)
T PF14781_consen 82 NNSD-------LFYKEVPDGVNAIVIGKLGDIPSPLVIVG-GNCSIQGFDYEGNEI 129 (136)
T ss_pred cCch-------hhhhhCccceeEEEEEecCCCCCcEEEEC-ceEEEEEeCCCCcEE
Confidence 7632 22233445677776632 23344444 445677777665443
No 459
>KOG1896 consensus mRNA cleavage and polyadenylation factor II complex, subunit CFT1 (CPSF subunit) [RNA processing and modification]
Probab=89.17 E-value=25 Score=34.87 Aligned_cols=180 Identities=14% Similarity=0.123 Sum_probs=97.4
Q ss_pred CCCcEEEEEccCCeEEEEeecCC-CceEEEEe-----CC--C---CeEEEEcC---------CCeEEEEEcCC----CCC
Q 047325 174 WDRTFKVWRISDSKCLESVSAHD-DAVNSVVS-----SS--E---GLIFTGSA---------DGTVKVWKREQ----HGK 229 (368)
Q Consensus 174 ~d~~i~iwd~~~~~~~~~~~~~~-~~v~~~~~-----~~--~---~~l~~~~~---------dg~i~i~d~~~----~~~ 229 (368)
....|.+....+.+.+..+.-.+ ..+.+++. .. . .+|++|.. .|.++++|+-. +++
T Consensus 1002 ~~f~i~LisP~sw~vi~~iefq~~E~v~~~k~v~L~~~~t~~~~k~ylavGT~~~~gEDv~~RGr~hi~diIeVVPepgk 1081 (1366)
T KOG1896|consen 1002 EQFSIQLISPESWEVIDKIEFQENEHVLHMKYVILDDEETTKGKKPYLAVGTAFIQGEDVPARGRIHIFDIIEVVPEPGK 1081 (1366)
T ss_pred ccceeEEecCCccccccccccCccceeeEEEEEEEEecccccCCcceEEEEEeecccccccCcccEEEEEEEEecCCCCC
Confidence 34566777766666555443221 22333332 11 1 27777743 58899999743 221
Q ss_pred -Ccccccce-eeccccccEEEEEEcCCCCEEEEecCCCcEEEEeC-CCccccceeeeccceEEEEEEeCCCEEEEeeCCC
Q 047325 230 -GTKHSLAQ-TLLKQECAVTALVVSSSRSIVYCGSSDGLVNFWER-EKQLSHGGVLKGHKLAVLCLAAAGKLVFSGSADK 306 (368)
Q Consensus 230 -~~~~~~~~-~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg 306 (368)
..+.+... .....+++|..++=- +|.++ ++ ....|.+|++ +........+..-...+.++..-+++|+.|.-=.
T Consensus 1082 P~t~~KlKel~~eE~KGtVsavceV-~G~l~-~~-~GqKI~v~~l~r~~~ligVaFiD~~~yv~s~~~vknlIl~gDV~k 1158 (1366)
T KOG1896|consen 1082 PFTKNKLKELYIEEQKGTVSAVCEV-RGHLL-SS-QGQKIIVRKLDRDSELIGVAFIDLPLYVHSMKVVKNLILAGDVMK 1158 (1366)
T ss_pred CcccceeeeeehhhcccceEEEEEe-ccEEE-Ec-cCcEEEEEEeccCCcceeeEEeccceeEEehhhhhhheehhhhhh
Confidence 11111111 123345667666532 45444 33 3467999999 4444443344444555566666688899888878
Q ss_pred eEEEEecCCCceeeeEeeeccc--cCeeEEEEecCCeeeecCCcceEEEEEeeCCcccccccC
Q 047325 307 TICVWRRDGAIHTCLSVLTGHT--GPVKCLAVEEDRDSSSSTSSCAQRWIVYSGSLDKSDDDV 367 (368)
Q Consensus 307 ~i~iw~~~~~~~~~~~~~~~h~--~~v~~l~~~~~~~~~~~~~~~~~~w~l~sg~~D~~v~i~ 367 (368)
.|.+..+.... ..+..+.... -.+.++.|--||.-+ .++.+..|++|+++
T Consensus 1159 sisfl~fqeep-~rlsL~srd~~~l~v~s~EFLVdg~~L----------~flvsDa~rNi~vy 1210 (1366)
T KOG1896|consen 1159 SISFLGFQEEP-YRLSLLSRDFEPLNVYSTEFLVDGSNL----------SFLVSDADRNIHVY 1210 (1366)
T ss_pred ceEEEEEccCc-eEEEEeecCCchhhceeeeeEEcCCee----------EEEEEcCCCcEEEE
Confidence 88887766542 2232232222 247788887777643 34455666666553
No 460
>PF12341 DUF3639: Protein of unknown function (DUF3639) ; InterPro: IPR022100 This domain family is found in eukaryotes, and is approximately 30 amino acids in length. The family is found in association with PF00400 from PFAM. There are two completely conserved residues (E and R) that may be functionally important.
Probab=88.95 E-value=1.4 Score=21.18 Aligned_cols=24 Identities=17% Similarity=0.362 Sum_probs=15.1
Q ss_pred cEEEEEecCCEEEEccCCCcEEEE
Q 047325 46 HIYSLAASKDLLYTGSDSKNIRVW 69 (368)
Q Consensus 46 ~i~~~~~~~~~l~s~~~dg~i~iw 69 (368)
.|.+++..+.+++.+.+-+.+|+|
T Consensus 3 ~i~aia~g~~~vavaTS~~~lRif 26 (27)
T PF12341_consen 3 EIEAIAAGDSWVAVATSAGYLRIF 26 (27)
T ss_pred eEEEEEccCCEEEEEeCCCeEEec
Confidence 456666666666666666666665
No 461
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=88.94 E-value=11 Score=30.59 Aligned_cols=99 Identities=14% Similarity=0.224 Sum_probs=59.8
Q ss_pred eEEEEeCCCC--eEEEEcCCC-eEEEEEcCCCCCCcccccceeecc--ccccEEEEEEcCCCCEEEEecCC-----CcEE
Q 047325 199 VNSVVSSSEG--LIFTGSADG-TVKVWKREQHGKGTKHSLAQTLLK--QECAVTALVVSSSRSIVYCGSSD-----GLVN 268 (368)
Q Consensus 199 v~~~~~~~~~--~l~~~~~dg-~i~i~d~~~~~~~~~~~~~~~~~~--~~~~i~~~~~~~~~~~l~~~~~d-----g~i~ 268 (368)
...++++|.- -++.+-.-| ...++|...... ...... .....-.=.|+|||.+|...-.| |.|-
T Consensus 70 ~Hgi~~~p~~~ravafARrPGtf~~vfD~~~~~~------pv~~~s~~~RHfyGHGvfs~dG~~LYATEndfd~~rGViG 143 (366)
T COG3490 70 GHGIAFHPALPRAVAFARRPGTFAMVFDPNGAQE------PVTLVSQEGRHFYGHGVFSPDGRLLYATENDFDPNRGVIG 143 (366)
T ss_pred cCCeecCCCCcceEEEEecCCceEEEECCCCCcC------cEEEecccCceeecccccCCCCcEEEeecCCCCCCCceEE
Confidence 3456677765 444444444 356788775533 111111 11111123589999999876433 6899
Q ss_pred EEeCCCccccceeeeccceEE--EEEEeCCCEEEEee
Q 047325 269 FWEREKQLSHGGVLKGHKLAV--LCLAAAGKLVFSGS 303 (368)
Q Consensus 269 i~d~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~~ 303 (368)
+||.+.+......+..|...- +.+.+||+.|+.+.
T Consensus 144 vYd~r~~fqrvgE~~t~GiGpHev~lm~DGrtlvvan 180 (366)
T COG3490 144 VYDAREGFQRVGEFSTHGIGPHEVTLMADGRTLVVAN 180 (366)
T ss_pred EEecccccceecccccCCcCcceeEEecCCcEEEEeC
Confidence 999997666656666654433 66778999988764
No 462
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=88.55 E-value=6.9 Score=27.69 Aligned_cols=110 Identities=15% Similarity=0.153 Sum_probs=60.5
Q ss_pred EeCCCC-eEEEEcCCCeEEEEEcCCCCCCcc-cccceeeccccccEEEEEEcC-----CCCEEEEecCCCcEEEEeCCCc
Q 047325 203 VSSSEG-LIFTGSADGTVKVWKREQHGKGTK-HSLAQTLLKQECAVTALVVSS-----SRSIVYCGSSDGLVNFWEREKQ 275 (368)
Q Consensus 203 ~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~-~~~~~~~~~~~~~i~~~~~~~-----~~~~l~~~~~dg~i~i~d~~~~ 275 (368)
.|.... .|++++.-|+|.|++......... ......+..-...|++++-.+ +...|+.|+. ..+..||....
T Consensus 5 kfDG~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LNin~~italaaG~l~~~~~~D~LliGt~-t~llaYDV~~N 83 (136)
T PF14781_consen 5 KFDGVHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFLNINQEITALAAGRLKPDDGRDCLLIGTQ-TSLLAYDVENN 83 (136)
T ss_pred EeCCCceeEEEEecCCEEEEECCCccccccccccCceeEEECCCceEEEEEEecCCCCCcCEEEEecc-ceEEEEEcccC
Confidence 344444 788888899999998765432110 111122233445577776443 3457777765 56999999876
Q ss_pred cccceeeeccceEEEEEEe------CCCEEEEeeCCCeEEEEecCCC
Q 047325 276 LSHGGVLKGHKLAVLCLAA------AGKLVFSGSADKTICVWRRDGA 316 (368)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~------~~~~l~~~~~dg~i~iw~~~~~ 316 (368)
....... -+..+.++.. +..++++| .+..|.-||.+..
T Consensus 84 ~d~Fyke--~~DGvn~i~~g~~~~~~~~l~ivG-Gncsi~Gfd~~G~ 127 (136)
T PF14781_consen 84 SDLFYKE--VPDGVNAIVIGKLGDIPSPLVIVG-GNCSIQGFDYEGN 127 (136)
T ss_pred chhhhhh--CccceeEEEEEecCCCCCcEEEEC-ceEEEEEeCCCCc
Confidence 5542222 2222322222 24445544 4667777766554
No 463
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=88.24 E-value=18 Score=32.09 Aligned_cols=110 Identities=11% Similarity=0.110 Sum_probs=60.5
Q ss_pred CCceEEEEeCCCCeEEEEcC-CCeEEEEEcCCCCCCcccccceee-ccccccEEEEEEcCCC------CEEEEec-----
Q 047325 196 DDAVNSVVSSSEGLIFTGSA-DGTVKVWKREQHGKGTKHSLAQTL-LKQECAVTALVVSSSR------SIVYCGS----- 262 (368)
Q Consensus 196 ~~~v~~~~~~~~~~l~~~~~-dg~i~i~d~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~------~~l~~~~----- 262 (368)
-...+.|+|.|++.++++-. .|.|++++................ ...+.....++++|+- .+|....
T Consensus 29 L~~Pw~maflPDG~llVtER~~G~I~~v~~~~~~~~~~~~l~~v~~~~ge~GLlglal~PdF~~~~~n~~lYvsyt~~~~ 108 (454)
T TIGR03606 29 LNKPWALLWGPDNQLWVTERATGKILRVNPETGEVKVVFTLPEIVNDAQHNGLLGLALHPDFMQEKGNPYVYISYTYKNG 108 (454)
T ss_pred CCCceEEEEcCCCeEEEEEecCCEEEEEeCCCCceeeeecCCceeccCCCCceeeEEECCCccccCCCcEEEEEEeccCC
Confidence 34568899999995555555 699999976543210000011111 1236778999999874 2344332
Q ss_pred -----CCCcEEEEeCCCc-------ccccee---eeccceEEEEEEeCCCEEEEeeCC
Q 047325 263 -----SDGLVNFWEREKQ-------LSHGGV---LKGHKLAVLCLAAAGKLVFSGSAD 305 (368)
Q Consensus 263 -----~dg~i~i~d~~~~-------~~~~~~---~~~~~~~~~~~~~~~~~l~~~~~d 305 (368)
....|.-|.+... +.+... ...|....+.|.||+.++++.++.
T Consensus 109 ~~~~~~~~~I~R~~l~~~~~~l~~~~~Il~~lP~~~~H~GgrI~FgPDG~LYVs~GD~ 166 (454)
T TIGR03606 109 DKELPNHTKIVRYTYDKSTQTLEKPVDLLAGLPAGNDHNGGRLVFGPDGKIYYTIGEQ 166 (454)
T ss_pred CCCccCCcEEEEEEecCCCCccccceEEEecCCCCCCcCCceEEECCCCcEEEEECCC
Confidence 1233444554311 111111 124777778899999876655443
No 464
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=87.47 E-value=25 Score=32.88 Aligned_cols=160 Identities=14% Similarity=0.132 Sum_probs=79.8
Q ss_pred CceeeeccCcCCcEEEEEecCC-EEEEccCCCcEEEEcCCcceecc-----cCCCCCeeEEEEeCCEEEEEeCCCeEE-E
Q 047325 34 NGLIGSLVREEGHIYSLAASKD-LLYTGSDSKNIRVWKNLKEFCGF-----KASSGLVKAIVISGEKIFTGHQDGKIR-V 106 (368)
Q Consensus 34 ~~~~~~~~~h~~~i~~~~~~~~-~l~s~~~dg~i~iw~~~~~~~~~-----~~~~~~v~~~~~~~~~l~s~~~dg~i~-v 106 (368)
++++.++.-..+.+-.+.|+.+ -|++-..||++.+++........ ......|..+.+..+-++.-..+|.+. +
T Consensus 73 G~lL~~~~w~~~~lI~mgWs~~eeLI~v~k~g~v~Vy~~~ge~ie~~svg~e~~~~~I~ec~~f~~GVavlt~~g~v~~i 152 (829)
T KOG2280|consen 73 GQLLGRILWKHGELIGMGWSDDEELICVQKDGTVHVYGLLGEFIESNSVGFESQMSDIVECRFFHNGVAVLTVSGQVILI 152 (829)
T ss_pred ccchHHHHhcCCCeeeecccCCceEEEEeccceEEEeecchhhhcccccccccccCceeEEEEecCceEEEecCCcEEEE
Confidence 3444444444457888999866 88889999999999986543332 223334444444433333333344443 3
Q ss_pred EeecCCCccccccCC--ccc-cceeeeeccCCCCceeEec-----------c--cceeeeeecCCCEeEEEEcCCCCEEE
Q 047325 107 WKISPKNQSVHKRAG--TLP-TLKDIFKSSIKPSNYIEVR-----------R--HRTALWIRHSDAVSCMSLDQDCGLLY 170 (368)
Q Consensus 107 w~~~~~~~~~~~~~~--~~~-~~~~~~~~~~~~~~~~~~~-----------~--~~~~~~~~~~~~v~~~~~~~~~~~l~ 170 (368)
-+.+..........+ ..+ ..-........+.....+. . .....+..-...+..+.++|+.++|+
T Consensus 153 ~~~~~~~~~~~~diP~~~~~~~~Wt~~~~~~~~~~ll~v~~~v~~~~~q~~~~~~q~~~~~~~~~~~~ki~VS~n~~~la 232 (829)
T KOG2280|consen 153 NGVEEPKLRKMPDIPYNELPKSCWTVFQPHRQSTILLDVDVAVGLHICQVEESRVQLHALSWPNSSVVKISVSPNRRFLA 232 (829)
T ss_pred cCCCcchhhhCCCCCCccCCCcceeEecCCCcceeEEeechhhhhcccceecccccccccCCCCceEEEEEEcCCcceEE
Confidence 333322111111100 000 0000011111111111110 0 00011111235677888999999999
Q ss_pred EEeCCCcEEEEEccCCeEEEEee
Q 047325 171 TASWDRTFKVWRISDSKCLESVS 193 (368)
Q Consensus 171 ~~~~d~~i~iwd~~~~~~~~~~~ 193 (368)
--...|.|.+-+....+....+.
T Consensus 233 Lyt~~G~i~~vs~D~~~~lce~~ 255 (829)
T KOG2280|consen 233 LYTETGKIWVVSIDLSQILCEFN 255 (829)
T ss_pred EEecCCcEEEEecchhhhhhccC
Confidence 88899999988877666665554
No 465
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=87.47 E-value=28 Score=33.43 Aligned_cols=116 Identities=8% Similarity=-0.022 Sum_probs=65.5
Q ss_pred CCEEEEEeCCCcEEEEEccCCeEEEEeecCCCc--------eEEEEeC-----------------CCCeEEEEcCCCeEE
Q 047325 166 CGLLYTASWDRTFKVWRISDSKCLESVSAHDDA--------VNSVVSS-----------------SEGLIFTGSADGTVK 220 (368)
Q Consensus 166 ~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~--------v~~~~~~-----------------~~~~l~~~~~dg~i~ 220 (368)
+..++.++.++.|.-.|..+|+.+-++...... .+.+.+. .++.++.++.|+.+.
T Consensus 194 gg~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~Li 273 (764)
T TIGR03074 194 GDTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARLI 273 (764)
T ss_pred CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeEE
Confidence 457778888899999999999988776532211 1112221 122788888999999
Q ss_pred EEEcCCCCCCccccc-----ce-eeccccccEEEEEEcC--CCCEEEEecC----------CCcEEEEeCCCcccccee
Q 047325 221 VWKREQHGKGTKHSL-----AQ-TLLKQECAVTALVVSS--SRSIVYCGSS----------DGLVNFWEREKQLSHGGV 281 (368)
Q Consensus 221 i~d~~~~~~~~~~~~-----~~-~~~~~~~~i~~~~~~~--~~~~l~~~~~----------dg~i~i~d~~~~~~~~~~ 281 (368)
-.|.++++....... .. .+......-..+.-.| .+..+++|+. +|.|+-+|.++++.....
T Consensus 274 ALDA~TGk~~W~fg~~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~Da~TGkl~W~~ 352 (764)
T TIGR03074 274 ALDADTGKLCEDFGNNGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAFDVNTGALVWAW 352 (764)
T ss_pred EEECCCCCEEEEecCCCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEEEECCCCcEeeEE
Confidence 999887743211100 00 0000000000111112 1345556542 688999999988776544
No 466
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=87.05 E-value=35 Score=34.18 Aligned_cols=144 Identities=15% Similarity=0.274 Sum_probs=84.6
Q ss_pred ccCCCcEEEEcCCc--ceecccCCCCCeeEEEEe----C------CEEEEEeCCCeEEEEeecCCCccccccCCccccce
Q 047325 60 GSDSKNIRVWKNLK--EFCGFKASSGLVKAIVIS----G------EKIFTGHQDGKIRVWKISPKNQSVHKRAGTLPTLK 127 (368)
Q Consensus 60 ~~~dg~i~iw~~~~--~~~~~~~~~~~v~~~~~~----~------~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~ 127 (368)
.+.|..+.+|+.++ ....+.+-...|..+..- | ++++.-+.--.|.++-+.-.+.......- .
T Consensus 95 iTiDn~L~lWny~~~~e~~~~d~~shtIl~V~LvkPkpgvFv~~IqhlLvvaT~~ei~ilgV~~~~~~~~~~~f-----~ 169 (1311)
T KOG1900|consen 95 ITIDNNLFLWNYESDNELAEYDGLSHTILKVGLVKPKPGVFVPEIQHLLVVATPVEIVILGVSFDEFTGELSIF-----N 169 (1311)
T ss_pred EEeCCeEEEEEcCCCCccccccchhhhheeeeeecCCCCcchhhhheeEEecccceEEEEEEEeccccCccccc-----c
Confidence 34688999999874 455566666667766653 1 24444444556777765543321111100 0
Q ss_pred eeeeccCCCCceeEecccceeeeeecCCCEeEEEEcCCCCEEEEEeCCCcEEEEEc----cCC---e-E-----------
Q 047325 128 DIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCGLLYTASWDRTFKVWRI----SDS---K-C----------- 188 (368)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~----~~~---~-~----------- 188 (368)
.. ....-..-.|+|+....+|+.|++| .|| .+|.+ ..+ + +
T Consensus 170 ~~------------------~~i~~dg~~V~~I~~t~nGRIF~~G-~dg--~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls 228 (1311)
T KOG1900|consen 170 TS------------------FKISVDGVSVNCITYTENGRIFFAG-RDG--NLYELVYQAEDGWFGSRCRKICLTKSVLS 228 (1311)
T ss_pred cc------------------eeeecCCceEEEEEeccCCcEEEee-cCC--CEEEEEEeccCchhhcccccccCchhHHH
Confidence 00 0001134568889877788766665 566 44443 111 1 0
Q ss_pred -----EEEee-cCCCceEEEEeCCCC-eEEEEcCCCeEEEEEcCCCCC
Q 047325 189 -----LESVS-AHDDAVNSVVSSSEG-LIFTGSADGTVKVWKREQHGK 229 (368)
Q Consensus 189 -----~~~~~-~~~~~v~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~ 229 (368)
+..+. .+..+|..+...... .+.+-+..|.|..||+...+.
T Consensus 229 ~lvPs~~~~~~~~~dpI~qi~ID~SR~IlY~lsek~~v~~Y~i~~~G~ 276 (1311)
T KOG1900|consen 229 SLVPSLLSVPGSSKDPIRQITIDNSRNILYVLSEKGTVSAYDIGGNGL 276 (1311)
T ss_pred HhhhhhhcCCCCCCCcceeeEeccccceeeeeccCceEEEEEccCCCc
Confidence 11122 456789999987776 888899999999999987543
No 467
>KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification]
Probab=86.31 E-value=35 Score=33.38 Aligned_cols=70 Identities=23% Similarity=0.402 Sum_probs=45.0
Q ss_pred cCCCEeEEEEcCCC------CEEEEEeCCCcEEEEEccCCeEEEEee--cCCCceEEEEeC---CC------C-eEEEEc
Q 047325 153 HSDAVSCMSLDQDC------GLLYTASWDRTFKVWRISDSKCLESVS--AHDDAVNSVVSS---SE------G-LIFTGS 214 (368)
Q Consensus 153 ~~~~v~~~~~~~~~------~~l~~~~~d~~i~iwd~~~~~~~~~~~--~~~~~v~~~~~~---~~------~-~l~~~~ 214 (368)
-...|.|+++.++. ++++.++.|+.++++.+.-...+..+. +-..++.++.+- .+ . +|.+|-
T Consensus 581 l~~~vac~ai~~~~~g~krsrfla~a~~d~~vriisL~p~d~l~~ls~q~l~~~~~s~~iv~~~~~~~~~~~~L~l~~GL 660 (1205)
T KOG1898|consen 581 LSTDVACLAIGQDPEGEKRSRFLALASVDNMVRIISLDPSDCLQPLSVQGLSSPPESLCIVEMEATGGTDVAQLYLLIGL 660 (1205)
T ss_pred eceeehhhccCCCCcchhhcceeeeeccccceeEEEecCcceEEEccccccCCCccceEEEEecccCCccceeEEEEecc
Confidence 34567888887754 579999999999999987665555553 223333333321 11 2 667777
Q ss_pred CCCeEEEE
Q 047325 215 ADGTVKVW 222 (368)
Q Consensus 215 ~dg~i~i~ 222 (368)
.+|.+.-+
T Consensus 661 ~NGvllR~ 668 (1205)
T KOG1898|consen 661 RNGVLLRF 668 (1205)
T ss_pred cccEEEEE
Confidence 77776555
No 468
>smart00564 PQQ beta-propeller repeat. Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases.
Probab=85.98 E-value=2.4 Score=21.19 Aligned_cols=24 Identities=21% Similarity=0.192 Sum_probs=20.3
Q ss_pred EEEEEeCCCcEEEEEccCCeEEEE
Q 047325 168 LLYTASWDRTFKVWRISDSKCLES 191 (368)
Q Consensus 168 ~l~~~~~d~~i~iwd~~~~~~~~~ 191 (368)
.++.++.+|.+..+|..+|+.+-.
T Consensus 8 ~v~~~~~~g~l~a~d~~~G~~~W~ 31 (33)
T smart00564 8 TVYVGSTDGTLYALDAKTGEILWT 31 (33)
T ss_pred EEEEEcCCCEEEEEEcccCcEEEE
Confidence 677888899999999999887654
No 469
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=85.69 E-value=7.8 Score=34.32 Aligned_cols=73 Identities=7% Similarity=0.006 Sum_probs=49.6
Q ss_pred CCEeEEEEcCCCCEEEEEeCCCcEEEEEc---------cCCeEEEEee-----------cCCCceEEEEeCCCC----eE
Q 047325 155 DAVSCMSLDQDCGLLYTASWDRTFKVWRI---------SDSKCLESVS-----------AHDDAVNSVVSSSEG----LI 210 (368)
Q Consensus 155 ~~v~~~~~~~~~~~l~~~~~d~~i~iwd~---------~~~~~~~~~~-----------~~~~~v~~~~~~~~~----~l 210 (368)
-.|..+..++.|..++-.+.+|.+..+=. +.|+.+...+ ...-.+...+|+|+. .|
T Consensus 104 feV~~vl~s~~GS~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~~~~ftss~~ltl~Qa~WHP~S~~D~hL 183 (741)
T KOG4460|consen 104 FEVYQVLLSPTGSHVALIGIKGLMVMELPKRWGKNSEFEDGKSTVNCRTTPVAERFFTSSTSLTLKQAAWHPSSILDPHL 183 (741)
T ss_pred EEEEEEEecCCCceEEEecCCeeEEEEchhhcCccceecCCCceEEEEeecccceeeccCCceeeeeccccCCccCCceE
Confidence 35777888999999999998885544321 2343322211 112235567899976 78
Q ss_pred EEEcCCCeEEEEEcCCC
Q 047325 211 FTGSADGTVKVWKREQH 227 (368)
Q Consensus 211 ~~~~~dg~i~i~d~~~~ 227 (368)
..-+.|..|++||+...
T Consensus 184 ~iL~sdnviRiy~lS~~ 200 (741)
T KOG4460|consen 184 VLLTSDNVIRIYSLSEP 200 (741)
T ss_pred EEEecCcEEEEEecCCc
Confidence 88889999999999765
No 470
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=85.50 E-value=19 Score=29.61 Aligned_cols=114 Identities=16% Similarity=0.190 Sum_probs=60.1
Q ss_pred CCeEEEEEcCCCCCCcccccceeeccccccEEEEEEcCCCCEEEEec------CCCcEEEEeCCCccccceeeec-----
Q 047325 216 DGTVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSSSRSIVYCGS------SDGLVNFWEREKQLSHGGVLKG----- 284 (368)
Q Consensus 216 dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~------~dg~i~i~d~~~~~~~~~~~~~----- 284 (368)
-..|.+||..... -...-.+-.+.|+.+.|..+.++++.|. ....+..||..+..-. .+..
T Consensus 15 C~~lC~yd~~~~q------W~~~g~~i~G~V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~~~w~--~~~~~~s~~ 86 (281)
T PF12768_consen 15 CPGLCLYDTDNSQ------WSSPGNGISGTVTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKNQTWS--SLGGGSSNS 86 (281)
T ss_pred CCEEEEEECCCCE------eecCCCCceEEEEEEEEecCCEEEEEEeeEECCCCceeEEEEecCCCeee--ecCCccccc
Confidence 4569999986541 2222233567899999987666776664 3556888998865331 1211
Q ss_pred cceEEEEEEe---CCC-EEEEee-CCCeEEEEecCCCceeeeEe-eeccccCeeEEEEe
Q 047325 285 HKLAVLCLAA---AGK-LVFSGS-ADKTICVWRRDGAIHTCLSV-LTGHTGPVKCLAVE 337 (368)
Q Consensus 285 ~~~~~~~~~~---~~~-~l~~~~-~dg~i~iw~~~~~~~~~~~~-~~~h~~~v~~l~~~ 337 (368)
-+.++..+.+ |+. +.++|. .+|.-.+...+..+...+.. .......|.++.+-
T Consensus 87 ipgpv~a~~~~~~d~~~~~~aG~~~~g~~~l~~~dGs~W~~i~~~~~~~~t~I~~l~~~ 145 (281)
T PF12768_consen 87 IPGPVTALTFISNDGSNFWVAGRSANGSTFLMKYDGSSWSSIGSDILGSGTTIRGLQVL 145 (281)
T ss_pred CCCcEEEEEeeccCCceEEEeceecCCCceEEEEcCCceEeccccccCCCCEEEEEEEE
Confidence 1345555554 444 444443 34443443334443333333 12223345555443
No 471
>KOG2714 consensus SETA binding protein SB1 and related proteins, contain BTB/POZ domain [General function prediction only]
Probab=85.27 E-value=8.9 Score=32.93 Aligned_cols=134 Identities=17% Similarity=0.207 Sum_probs=67.8
Q ss_pred CCEEEEEeCCCeEEEEeecCCCccccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcCCCCEEEE
Q 047325 92 GEKIFTGHQDGKIRVWKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCGLLYT 171 (368)
Q Consensus 92 ~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~ 171 (368)
++.+..-+..+.|-+|+..+++........... ....-.-+.|.+...+++.
T Consensus 235 ~~~l~~~s~~~~Igvw~~~t~q~~d~~~~s~~d----------------------------sag~~~kL~w~ng~~~li~ 286 (465)
T KOG2714|consen 235 GTQLVALSSVGKIGVWHAVTQQAQDVQPISSYD----------------------------SAGSFLKLGWLNGSNLLID 286 (465)
T ss_pred hhhhhhccccccccccchhhhceeeeeeccCcc----------------------------ccCChhhhccccCceeEEE
Confidence 556666777888999998877322111111000 1122233445543333333
Q ss_pred E-------eCCCcEEEEEccCCeEEEEeecCCCceEEEEeCCCCeEEEEcCCCeEEEEEcCCCCCCcccccceeeccccc
Q 047325 172 A-------SWDRTFKVWRISDSKCLESVSAHDDAVNSVVSSSEGLIFTGSADGTVKVWKREQHGKGTKHSLAQTLLKQEC 244 (368)
Q Consensus 172 ~-------~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~ 244 (368)
. ..++.|.+||.++.. +...|. .++.++..+.+++-+.-.............+..|..
T Consensus 287 ~~~fp~~~kdN~~i~~~d~Rd~n------------~~~~W~---~i~~gt~~~~vrv~~~~~~~~~~~~~l~~~f~~~~~ 351 (465)
T KOG2714|consen 287 SQKFPLRMKDNDLIVTEDFRDRN------------TSGNWI---EIAYGTSSGEVRVIDQHPETVGVGPCLFQTFEVHGS 351 (465)
T ss_pred EeeccccccCCceEEEeeccCCC------------ccceEE---EecCCccccceEeeeccccccCCCCeEEEEEEecCC
Confidence 2 235678888887654 112221 455566677777777643332222333344444443
Q ss_pred cEEEEEEcCCCCEEEEecCCCcEEEEeCCCccc
Q 047325 245 AVTALVVSSSRSIVYCGSSDGLVNFWEREKQLS 277 (368)
Q Consensus 245 ~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~ 277 (368)
+. + ++=.+...+.+++|......-
T Consensus 352 ~L--------~-~idv~~~~~~~~~~~~tr~rG 375 (465)
T KOG2714|consen 352 PL--------G-LIDVCSDGGHVRVWNSTRFRG 375 (465)
T ss_pred Cc--------c-eeehhhhCCcceEEeeccccc
Confidence 31 1 333344556788888765433
No 472
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=85.17 E-value=22 Score=30.01 Aligned_cols=136 Identities=11% Similarity=0.093 Sum_probs=60.4
Q ss_pred CCCEEEEEeCC-----CcEEEEEccCCeE---EEEeecCCCce--EEEEeCCCCeEEEEcC-----CCeEEEEEcCCCCC
Q 047325 165 DCGLLYTASWD-----RTFKVWRISDSKC---LESVSAHDDAV--NSVVSSSEGLIFTGSA-----DGTVKVWKREQHGK 229 (368)
Q Consensus 165 ~~~~l~~~~~d-----~~i~iwd~~~~~~---~~~~~~~~~~v--~~~~~~~~~~l~~~~~-----dg~i~i~d~~~~~~ 229 (368)
++.+++.|+.+ ..+..+|+.+.+- ...+..-..+. .+++...+...+.|+. ...+..||+.+..=
T Consensus 72 ~~~lyviGG~~~~~~~~~v~~~d~~~~~w~~~~~~~~~lp~~~~~~~~~~~~~~iYv~GG~~~~~~~~~v~~yd~~~~~W 151 (323)
T TIGR03548 72 ENGIYYIGGSNSSERFSSVYRITLDESKEELICETIGNLPFTFENGSACYKDGTLYVGGGNRNGKPSNKSYLFNLETQEW 151 (323)
T ss_pred CCEEEEEcCCCCCCCceeEEEEEEcCCceeeeeeEcCCCCcCccCceEEEECCEEEEEeCcCCCccCceEEEEcCCCCCe
Confidence 44566666654 3566777766542 12221111111 1223333335555553 24678888875421
Q ss_pred CcccccceeeccccccEEEEEEcCCCCEEEEecCCC----cEEEEeCCCccccce-ee-e-ccceE---EEEEE-eCCCE
Q 047325 230 GTKHSLAQTLLKQECAVTALVVSSSRSIVYCGSSDG----LVNFWEREKQLSHGG-VL-K-GHKLA---VLCLA-AAGKL 298 (368)
Q Consensus 230 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg----~i~i~d~~~~~~~~~-~~-~-~~~~~---~~~~~-~~~~~ 298 (368)
..+..+.... .....+...++++.+.|+.++ .+..||.++..-... .. . ..+.. ...+. .++.+
T Consensus 152 ----~~~~~~p~~~-r~~~~~~~~~~~iYv~GG~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~p~~~~~~~~~~~~~~~i 226 (323)
T TIGR03548 152 ----FELPDFPGEP-RVQPVCVKLQNELYVFGGGSNIAYTDGYKYSPKKNQWQKVADPTTDSEPISLLGAASIKINESLL 226 (323)
T ss_pred ----eECCCCCCCC-CCcceEEEECCEEEEEcCCCCccccceEEEecCCCeeEECCCCCCCCCceeccceeEEEECCCEE
Confidence 1111111111 111122223567777777654 356788775432111 00 0 01111 12222 35778
Q ss_pred EEEeeCC
Q 047325 299 VFSGSAD 305 (368)
Q Consensus 299 l~~~~~d 305 (368)
++.|+.+
T Consensus 227 yv~GG~~ 233 (323)
T TIGR03548 227 LCIGGFN 233 (323)
T ss_pred EEECCcC
Confidence 8888876
No 473
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=84.78 E-value=24 Score=30.12 Aligned_cols=33 Identities=18% Similarity=0.198 Sum_probs=20.7
Q ss_pred EEEeCCCEEEEeeCC----------------------CeEEEEecCCCceeeeEe
Q 047325 291 CLAAAGKLVFSGSAD----------------------KTICVWRRDGAIHTCLSV 323 (368)
Q Consensus 291 ~~~~~~~~l~~~~~d----------------------g~i~iw~~~~~~~~~~~~ 323 (368)
+...++++.+.|+.+ ..+.+||.++.+...+..
T Consensus 253 a~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~e~yd~~~~~W~~~~~ 307 (346)
T TIGR03547 253 AGISNGVLLVAGGANFPGAQENYKNGKLYAHEGLIKAWSSEVYALDNGKWSKVGK 307 (346)
T ss_pred eeEECCEEEEeecCCCCCchhhhhcCCccccCCCCceeEeeEEEecCCcccccCC
Confidence 344678888888754 146788877665544443
No 474
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=83.93 E-value=18 Score=27.99 Aligned_cols=102 Identities=10% Similarity=0.060 Sum_probs=54.9
Q ss_pred CCCEEEEEeC--CCcEEEEEccCCeEEEEeecCCCceE--EEEeCCCCeEEEEcCCCeEEEEEcCCCCCCcccccceeec
Q 047325 165 DCGLLYTASW--DRTFKVWRISDSKCLESVSAHDDAVN--SVVSSSEGLIFTGSADGTVKVWKREQHGKGTKHSLAQTLL 240 (368)
Q Consensus 165 ~~~~l~~~~~--d~~i~iwd~~~~~~~~~~~~~~~~v~--~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~ 240 (368)
++.++.+.+. ...|+.||+.+++.+..-+-....+. .+.-..+....-.-.+|.-..+|.++.+. ...+
T Consensus 55 ~g~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~~~~~FgEGit~~gd~~y~LTw~egvaf~~d~~t~~~------lg~~- 127 (262)
T COG3823 55 DGHILESTGLYGFSKIRVSDLTTGQEIFSEKLAPDTVFGEGITKLGDYFYQLTWKEGVAFKYDADTLEE------LGRF- 127 (262)
T ss_pred CCEEEEeccccccceeEEEeccCceEEEEeecCCccccccceeeccceEEEEEeccceeEEEChHHhhh------hccc-
Confidence 4456666554 34799999999988765543311221 11222222333345678888888875422 1111
Q ss_pred cccccEEEEEEcCCCCEEEEecCCCcEEEEeCCCc
Q 047325 241 KQECAVTALVVSSSRSIVYCGSSDGLVNFWEREKQ 275 (368)
Q Consensus 241 ~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~ 275 (368)
..++.=..++. ++.-|+.+.....++.-|.++.
T Consensus 128 ~y~GeGWgLt~--d~~~LimsdGsatL~frdP~tf 160 (262)
T COG3823 128 SYEGEGWGLTS--DDKNLIMSDGSATLQFRDPKTF 160 (262)
T ss_pred ccCCcceeeec--CCcceEeeCCceEEEecCHHHh
Confidence 12222334433 5555777766667777665543
No 475
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=83.83 E-value=6.2 Score=36.19 Aligned_cols=34 Identities=24% Similarity=0.385 Sum_probs=25.5
Q ss_pred ccEEEEEEcC----CCCEEEEecCCCcEEEEeCCCccc
Q 047325 244 CAVTALVVSS----SRSIVYCGSSDGLVNFWEREKQLS 277 (368)
Q Consensus 244 ~~i~~~~~~~----~~~~l~~~~~dg~i~i~d~~~~~~ 277 (368)
.....++.+. +..+|++-+.|+.+++||+.++..
T Consensus 215 ~~~~~~~~~~~~~~~~~~l~tl~~D~~LRiW~l~t~~~ 252 (547)
T PF11715_consen 215 SVAASLAVSSSEINDDTFLFTLSRDHTLRIWSLETGQC 252 (547)
T ss_dssp --EEEEEE-----ETTTEEEEEETTSEEEEEETTTTCE
T ss_pred CccceEEEecceeCCCCEEEEEeCCCeEEEEECCCCeE
Confidence 3455566666 678999999999999999998776
No 476
>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....
Probab=83.30 E-value=2 Score=22.63 Aligned_cols=19 Identities=16% Similarity=-0.031 Sum_probs=12.5
Q ss_pred ccccCeeEEEEecCCeeee
Q 047325 326 GHTGPVKCLAVEEDRDSSS 344 (368)
Q Consensus 326 ~h~~~v~~l~~~~~~~~~~ 344 (368)
.....-....|+|||+.++
T Consensus 6 ~~~~~~~~p~~SpDGk~i~ 24 (39)
T PF07676_consen 6 NSPGDDGSPAWSPDGKYIY 24 (39)
T ss_dssp -SSSSEEEEEE-TTSSEEE
T ss_pred cCCccccCEEEecCCCEEE
Confidence 3445677889999999643
No 477
>PF01011 PQQ: PQQ enzyme repeat family.; InterPro: IPR002372 Pyrrolo-quinoline quinone (PQQ) is a redox coenzyme, which serves as a cofactor for a number of enzymes (quinoproteins) and particularly for some bacterial dehydrogenases [, ]. A number of bacterial quinoproteins belong to this family. Enzymes in this group have repeats of a beta propeller.; PDB: 1H4I_C 1H4J_E 1W6S_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A 1G72_A ....
Probab=83.30 E-value=4 Score=21.41 Aligned_cols=27 Identities=15% Similarity=0.111 Sum_probs=22.9
Q ss_pred EEEEEeCCCcEEEEEccCCeEEEEeec
Q 047325 168 LLYTASWDRTFKVWRISDSKCLESVSA 194 (368)
Q Consensus 168 ~l~~~~~d~~i~iwd~~~~~~~~~~~~ 194 (368)
.++.++.+|.|...|.++|+.+-.++.
T Consensus 2 ~v~~~~~~g~l~AlD~~TG~~~W~~~~ 28 (38)
T PF01011_consen 2 RVYVGTPDGYLYALDAKTGKVLWKFQT 28 (38)
T ss_dssp EEEEETTTSEEEEEETTTTSEEEEEES
T ss_pred EEEEeCCCCEEEEEECCCCCEEEeeeC
Confidence 466678999999999999999887764
No 478
>PRK13684 Ycf48-like protein; Provisional
Probab=83.04 E-value=28 Score=29.59 Aligned_cols=144 Identities=12% Similarity=0.102 Sum_probs=72.5
Q ss_pred CCceEEEEeCCCCeEEEEcCCCeEEEEEcCCCCCCcccccceeeccccccEEEEEEcCCCCEEEEecCCCcEEEEeCCCc
Q 047325 196 DDAVNSVVSSSEGLIFTGSADGTVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSSSRSIVYCGSSDGLVNFWEREKQ 275 (368)
Q Consensus 196 ~~~v~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~ 275 (368)
...+.++.+.+++.++..+..|.+..- .+..+. .. ..........++++.+.++++.++.+ ..|.+++=....+
T Consensus 172 ~g~~~~i~~~~~g~~v~~g~~G~i~~s-~~~gg~--tW--~~~~~~~~~~l~~i~~~~~g~~~~vg-~~G~~~~~s~d~G 245 (334)
T PRK13684 172 AGVVRNLRRSPDGKYVAVSSRGNFYST-WEPGQT--AW--TPHQRNSSRRLQSMGFQPDGNLWMLA-RGGQIRFNDPDDL 245 (334)
T ss_pred cceEEEEEECCCCeEEEEeCCceEEEE-cCCCCC--eE--EEeeCCCcccceeeeEcCCCCEEEEe-cCCEEEEccCCCC
Confidence 456888999998855566666765432 111111 11 11222345678999999998877765 4576653223322
Q ss_pred cccceeeec---cceEEE--EEEeCCCEEEEeeCCCeEEEEecCCC-ceeeeEeeeccccCeeEEEEecCCeeeecCC
Q 047325 276 LSHGGVLKG---HKLAVL--CLAAAGKLVFSGSADKTICVWRRDGA-IHTCLSVLTGHTGPVKCLAVEEDRDSSSSTS 347 (368)
Q Consensus 276 ~~~~~~~~~---~~~~~~--~~~~~~~~l~~~~~dg~i~iw~~~~~-~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~ 347 (368)
..-.....+ ....+. .+.+++..+ .++.+|.+.. ..+.+ ..+.+.....-....+.+.|..++..++.+.
T Consensus 246 ~sW~~~~~~~~~~~~~l~~v~~~~~~~~~-~~G~~G~v~~-S~d~G~tW~~~~~~~~~~~~~~~~~~~~~~~~~~~G~ 321 (334)
T PRK13684 246 ESWSKPIIPEITNGYGYLDLAYRTPGEIW-AGGGNGTLLV-SKDGGKTWEKDPVGEEVPSNFYKIVFLDPEKGFVLGQ 321 (334)
T ss_pred CccccccCCccccccceeeEEEcCCCCEE-EEcCCCeEEE-eCCCCCCCeECCcCCCCCcceEEEEEeCCCceEEECC
Confidence 211110100 112233 344555554 4556776654 33332 2222211122234578888887777544444
No 479
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=82.70 E-value=29 Score=29.48 Aligned_cols=51 Identities=22% Similarity=0.098 Sum_probs=31.4
Q ss_pred CCCEEEEeeCCCeEEEEecCCCce-eeeEe-eeccccCeeEEEEecCCeeeec
Q 047325 295 AGKLVFSGSADKTICVWRRDGAIH-TCLSV-LTGHTGPVKCLAVEEDRDSSSS 345 (368)
Q Consensus 295 ~~~~l~~~~~dg~i~iw~~~~~~~-~~~~~-~~~h~~~v~~l~~~~~~~~~~~ 345 (368)
.+.++++.-..+.|....++.... ..... +......+.+|++.|||.+.++
T Consensus 270 ~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~r~~~v~~~pDG~Lyv~ 322 (331)
T PF07995_consen 270 RGDLFVADYGGGRIWRLDLDEDGSVTEEEEFLGGFGGRPRDVAQGPDGALYVS 322 (331)
T ss_dssp TTEEEEEETTTTEEEEEEEETTEEEEEEEEECTTSSS-EEEEEEETTSEEEEE
T ss_pred cCcEEEecCCCCEEEEEeeecCCCccceEEccccCCCCceEEEEcCCCeEEEE
Confidence 356777766677888887764421 11222 2334458999999999995333
No 480
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=82.33 E-value=30 Score=29.48 Aligned_cols=12 Identities=8% Similarity=0.169 Sum_probs=8.5
Q ss_pred CcEEEEEccCCe
Q 047325 176 RTFKVWRISDSK 187 (368)
Q Consensus 176 ~~i~iwd~~~~~ 187 (368)
..+..||..+.+
T Consensus 168 ~~v~~YDp~t~~ 179 (346)
T TIGR03547 168 KNVLSYDPSTNQ 179 (346)
T ss_pred ceEEEEECCCCc
Confidence 468888887654
No 481
>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=81.81 E-value=14 Score=32.13 Aligned_cols=105 Identities=10% Similarity=0.128 Sum_probs=62.6
Q ss_pred CCCCEEEEEeCCCcEEEE-EccCC-e----EEEEeecCCCceEEEEeCCCC-eEEEEcCCCeEEEEEcCCCCCCcccccc
Q 047325 164 QDCGLLYTASWDRTFKVW-RISDS-K----CLESVSAHDDAVNSVVSSSEG-LIFTGSADGTVKVWKREQHGKGTKHSLA 236 (368)
Q Consensus 164 ~~~~~l~~~~~d~~i~iw-d~~~~-~----~~~~~~~~~~~v~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~ 236 (368)
..+.-+++++.||.|.-| |.+.+ . .++.++-...++..+.-..+. -+++-+.+|++..+...... .
T Consensus 278 ~Gg~SLLv~~~dG~vsQWFdvr~~~~p~l~h~R~f~l~pa~~~~l~pe~~rkgF~~l~~~G~L~~f~st~~~-------~ 350 (733)
T COG4590 278 SGGFSLLVVHEDGLVSQWFDVRRDGQPHLNHIRNFKLAPAEVQFLLPETNRKGFYSLYRNGTLQSFYSTSEK-------L 350 (733)
T ss_pred hCceeEEEEcCCCceeeeeeeecCCCCcceeeeccccCcccceeeccccccceEEEEcCCCceeeeecccCc-------c
Confidence 345668888889988877 54432 1 222333223344433322222 56777888888887654331 1
Q ss_pred eeeccccccEEEEEEcCCCCEEEEecCCCcEEEEeCCCcc
Q 047325 237 QTLLKQECAVTALVVSSSRSIVYCGSSDGLVNFWEREKQL 276 (368)
Q Consensus 237 ~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~ 276 (368)
......-..+.-++++|+++++++-. .|.++++.+++..
T Consensus 351 lL~~~~~~~~~~~~~Sp~~~~Ll~e~-~gki~~~~l~Nr~ 389 (733)
T COG4590 351 LLFERAYQAPQLVAMSPNQAYLLSED-QGKIRLAQLENRN 389 (733)
T ss_pred eehhhhhcCcceeeeCcccchheeec-CCceEEEEecCCC
Confidence 11222223566788999999998764 4679999887653
No 482
>COG3292 Predicted periplasmic ligand-binding sensor domain [Signal transduction mechanisms]
Probab=81.46 E-value=41 Score=30.47 Aligned_cols=146 Identities=12% Similarity=0.166 Sum_probs=75.6
Q ss_pred CcEEEEEecCC-EEEEccCCCcEEEEcCCcc-eeccc--CCCCCeeEEEEe-CCEEEEEeCCCeEEEEeecCCCcccccc
Q 047325 45 GHIYSLAASKD-LLYTGSDSKNIRVWKNLKE-FCGFK--ASSGLVKAIVIS-GEKIFTGHQDGKIRVWKISPKNQSVHKR 119 (368)
Q Consensus 45 ~~i~~~~~~~~-~l~s~~~dg~i~iw~~~~~-~~~~~--~~~~~v~~~~~~-~~~l~s~~~dg~i~vw~~~~~~~~~~~~ 119 (368)
.+|.++.++-+ .+..|..||-- .+|..+. ...+. ....+|.++..+ ...|..|+.+| +.+.+.+..+......
T Consensus 165 ~~V~aLv~D~~g~lWvgT~dGL~-~fd~~~gkalql~s~~~dk~I~al~~d~qg~LWVGTdqG-v~~~e~~G~~~sn~~~ 242 (671)
T COG3292 165 TPVVALVFDANGRLWVGTPDGLS-YFDAGRGKALQLASPPLDKAINALIADVQGRLWVGTDQG-VYLQEAEGWRASNWGP 242 (671)
T ss_pred ccceeeeeeccCcEEEecCCcce-EEccccceEEEcCCCcchhhHHHHHHHhcCcEEEEeccc-eEEEchhhccccccCC
Confidence 34666666633 67778888854 4454432 22211 122456666655 67788888766 4455554421100000
Q ss_pred CCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcCCCCEEEEEeCCCcEEEEEccCCeEEEEeecC--CC
Q 047325 120 AGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCGLLYTASWDRTFKVWRISDSKCLESVSAH--DD 197 (368)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~--~~ 197 (368)
.- ....|..+.-..+| .+-.|+..|-.+.--.+.+-.+...+.| -.
T Consensus 243 ~l-------------------------------p~~~I~ll~qD~qG-~lWiGTenGl~r~~l~rq~Lq~~~~~~~l~~S 290 (671)
T COG3292 243 ML-------------------------------PSGNILLLVQDAQG-ELWIGTENGLWRTRLPRQGLQIPLSKMHLGVS 290 (671)
T ss_pred CC-------------------------------cchheeeeecccCC-CEEEeecccceeEecCCCCccccccccCCccc
Confidence 00 22344444444444 4666666664433222222222222222 24
Q ss_pred ceEEEEeCCCCeEEEEcCCCeEEEEEc
Q 047325 198 AVNSVVSSSEGLIFTGSADGTVKVWKR 224 (368)
Q Consensus 198 ~v~~~~~~~~~~l~~~~~dg~i~i~d~ 224 (368)
.|.++....+|.+-+++.+|.+++-+-
T Consensus 291 ~vnsL~~D~dGsLWv~t~~giv~~~~a 317 (671)
T COG3292 291 TVNSLWLDTDGSLWVGTYGGIVRYLTA 317 (671)
T ss_pred cccceeeccCCCEeeeccCceEEEecc
Confidence 566777777788999998888776554
No 483
>KOG1520 consensus Predicted alkaloid synthase/Surface mucin Hemomucin [General function prediction only]
Probab=81.24 E-value=33 Score=29.26 Aligned_cols=44 Identities=14% Similarity=0.069 Sum_probs=27.3
Q ss_pred EeeCCCeEEEEecCCCceeeeEeeeccccCeeEEEEecCCeeeecCC
Q 047325 301 SGSADKTICVWRRDGAIHTCLSVLTGHTGPVKCLAVEEDRDSSSSTS 347 (368)
Q Consensus 301 ~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~ 347 (368)
.+..+|++.-||..+.. ...+...-.-.+.++.|||+.++..+-
T Consensus 194 ~g~~~GRl~~YD~~tK~---~~VLld~L~F~NGlaLS~d~sfvl~~E 237 (376)
T KOG1520|consen 194 EGDPTGRLFRYDPSTKV---TKVLLDGLYFPNGLALSPDGSFVLVAE 237 (376)
T ss_pred cCCCccceEEecCcccc---hhhhhhcccccccccCCCCCCEEEEEe
Confidence 44467888888765542 222322333467789999999876553
No 484
>KOG3522 consensus Predicted guanine nucleotide exchange factor [Signal transduction mechanisms]
Probab=80.46 E-value=19 Score=34.00 Aligned_cols=141 Identities=16% Similarity=0.158 Sum_probs=84.3
Q ss_pred EEEEccCCCcEEEEcCC-c---c--eecccCCCCCeeEEEEeCCEEEEEeCCCeEEEEeecCCCccccccCCccccceee
Q 047325 56 LLYTGSDSKNIRVWKNL-K---E--FCGFKASSGLVKAIVISGEKIFTGHQDGKIRVWKISPKNQSVHKRAGTLPTLKDI 129 (368)
Q Consensus 56 ~l~s~~~dg~i~iw~~~-~---~--~~~~~~~~~~v~~~~~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~ 129 (368)
.+..|+.++.+.++... . + ...+......+.++.+...-+..|.-||++-.+--..... .... +
T Consensus 549 Tic~gtq~ssisissss~~s~ke~~~~~~spe~~~v~~l~~ss~Slgagl~dgt~a~y~rap~gS-wd~e----p----- 618 (925)
T KOG3522|consen 549 TICLGTQTSSISISSSSLDSIKEVTSEPPSPEHESVKLLLFSSGSLGAGLIDGTLAVYGRAPSGS-WDGE----P----- 618 (925)
T ss_pred cccccCccceeEEeeccCCcccceeccCCCCchhhhhhhhccccccccCccCCccccccCCCCCC-CCCC----C-----
Confidence 56778888888888644 1 1 1122334556777777766677777777776653221111 0000 0
Q ss_pred eeccCCCCceeEecccceeeeeecCCCEeEEEEcCCCCEEEEEeCCCcEEEEEccCCeEEEEeec---CCCceEEEEeCC
Q 047325 130 FKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCGLLYTASWDRTFKVWRISDSKCLESVSA---HDDAVNSVVSSS 206 (368)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~---~~~~v~~~~~~~ 206 (368)
......-..+|...++..| ++.++.+|.|.++...+......+.. |...|+++....
T Consensus 619 -----------------~~~~~~g~lPvrsla~~ed---~~was~gG~V~vi~~tt~~~~~~leahqee~~~Vthm~~~~ 678 (925)
T KOG3522|consen 619 -----------------NISIPTGSLPVRSLAFQED---FVWASEGGCVHVIPSTTFIRSWDLEAHQEEAHSVTHMLYLD 678 (925)
T ss_pred -----------------ccccccCCccccchhhhhc---eeeeecCCceEEEechhccccchhHHHHhhcceEEEEEeeC
Confidence 0000013456777777655 56677789999999987766655544 456799999988
Q ss_pred CCeEEEEcCCCeEEEEEcCC
Q 047325 207 EGLIFTGSADGTVKVWKREQ 226 (368)
Q Consensus 207 ~~~l~~~~~dg~i~i~d~~~ 226 (368)
.+..++-.....++.++..+
T Consensus 679 ~gVwvafasG~~~rlfhtet 698 (925)
T KOG3522|consen 679 NGVWVAFASGDEERLFHTET 698 (925)
T ss_pred CceEEEEcCCCEEEEecccc
Confidence 88444444444666665543
No 485
>KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=80.39 E-value=66 Score=32.15 Aligned_cols=70 Identities=20% Similarity=0.284 Sum_probs=40.0
Q ss_pred ccccEEEEEEcCCCCEEEEecCCCcEEEEeCCCccccceeeeccceEEEEEEeCCCEEEEeeCCCeEEEEecCCC
Q 047325 242 QECAVTALVVSSSRSIVYCGSSDGLVNFWEREKQLSHGGVLKGHKLAVLCLAAAGKLVFSGSADKTICVWRRDGA 316 (368)
Q Consensus 242 ~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~ 316 (368)
+..++.+..+....+.+ .+...+.+.+|+.............+... ..++..++++..||.+.+||.+.+
T Consensus 197 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~v~~h~Dgs~~fWd~s~g 266 (993)
T KOG1983|consen 197 IEYESLQVLYYSPTKIL-IGFNRGLVVIKDRASKYVQSAYLPNGQLE----SRDGSHFVSYHTDGSYAFWDVSSG 266 (993)
T ss_pred cccccceeeeecCCCcc-eeeeeeeeeehhcccccchhhcccccccC----ccCCceEEEEEecCCEEeeecCCC
Confidence 34444444444333333 33344666666655433332222221111 778899999999999999998775
No 486
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=80.39 E-value=6.8 Score=20.76 Aligned_cols=40 Identities=15% Similarity=0.199 Sum_probs=23.7
Q ss_pred eCCCEEEEee-CCCeEEEEecCCCceeeeEeeeccccCeeEEEE
Q 047325 294 AAGKLVFSGS-ADKTICVWRRDGAIHTCLSVLTGHTGPVKCLAV 336 (368)
Q Consensus 294 ~~~~~l~~~~-~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~l~~ 336 (368)
|+++.|+++. .+++|.++|..+. ..+..+.. ......++|
T Consensus 1 pd~~~lyv~~~~~~~v~~id~~~~--~~~~~i~v-g~~P~~i~~ 41 (42)
T TIGR02276 1 PDGTKLYVTNSGSNTVSVIDTATN--KVIATIPV-GGYPFGVAV 41 (42)
T ss_pred CCCCEEEEEeCCCCEEEEEECCCC--eEEEEEEC-CCCCceEEe
Confidence 4566666554 5889999988665 55555543 233334444
No 487
>PLN02153 epithiospecifier protein
Probab=79.68 E-value=38 Score=28.88 Aligned_cols=62 Identities=11% Similarity=0.150 Sum_probs=30.1
Q ss_pred EecCCEEEEccCC-------CcEEEEcCCcceecc-c--C--CCC---CeeEEEEeCCEEEEEeCCC-----eEEEEeec
Q 047325 51 AASKDLLYTGSDS-------KNIRVWKNLKEFCGF-K--A--SSG---LVKAIVISGEKIFTGHQDG-----KIRVWKIS 110 (368)
Q Consensus 51 ~~~~~~l~s~~~d-------g~i~iw~~~~~~~~~-~--~--~~~---~v~~~~~~~~~l~s~~~dg-----~i~vw~~~ 110 (368)
...+.+++.|+.+ ..+.++|+.+..-.. . . ... ....+.+.+..++.|+.++ .+.+||+.
T Consensus 30 ~~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~p~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~ 109 (341)
T PLN02153 30 VVGDKLYSFGGELKPNEHIDKDLYVFDFNTHTWSIAPANGDVPRISCLGVRMVAVGTKLYIFGGRDEKREFSDFYSYDTV 109 (341)
T ss_pred EECCEEEEECCccCCCCceeCcEEEEECCCCEEEEcCccCCCCCCccCceEEEEECCEEEEECCCCCCCccCcEEEEECC
Confidence 3455566667753 246777766432111 1 0 010 1223334456666666532 35666665
Q ss_pred CC
Q 047325 111 PK 112 (368)
Q Consensus 111 ~~ 112 (368)
+.
T Consensus 110 t~ 111 (341)
T PLN02153 110 KN 111 (341)
T ss_pred CC
Confidence 44
No 488
>PF13570 PQQ_3: PQQ-like domain; PDB: 3HXJ_B 3Q54_A.
Probab=77.93 E-value=6.9 Score=20.71 Aligned_cols=24 Identities=17% Similarity=0.530 Sum_probs=15.8
Q ss_pred EEEEeCCEEEEEeCCCeEEEEeec
Q 047325 87 AIVISGEKIFTGHQDGKIRVWKIS 110 (368)
Q Consensus 87 ~~~~~~~~l~s~~~dg~i~vw~~~ 110 (368)
++...++.++.++.||.+..+|.+
T Consensus 16 ~~~v~~g~vyv~~~dg~l~ald~~ 39 (40)
T PF13570_consen 16 SPAVAGGRVYVGTGDGNLYALDAA 39 (40)
T ss_dssp --EECTSEEEEE-TTSEEEEEETT
T ss_pred CCEEECCEEEEEcCCCEEEEEeCC
Confidence 335557788888888888887764
No 489
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=77.22 E-value=48 Score=28.75 Aligned_cols=14 Identities=29% Similarity=0.423 Sum_probs=9.8
Q ss_pred EEeCCCEEEEeeCC
Q 047325 292 LAAAGKLVFSGSAD 305 (368)
Q Consensus 292 ~~~~~~~l~~~~~d 305 (368)
...++++++.|+.+
T Consensus 276 ~~~~~~iyv~GG~~ 289 (376)
T PRK14131 276 GYSNGVLLVAGGAN 289 (376)
T ss_pred eeECCEEEEeeccC
Confidence 34577888888754
No 490
>PF10433 MMS1_N: Mono-functional DNA-alkylating methyl methanesulfonate N-term; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 2B5N_C 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A ....
Probab=76.47 E-value=61 Score=29.52 Aligned_cols=87 Identities=14% Similarity=0.088 Sum_probs=48.3
Q ss_pred cCCCCEEEEecCCCcEEEEeCCCccc-cceeeecc-ceEEEEEEe-CCC--EEEEeeCCCeEEEEecCCCceeeeEeeec
Q 047325 252 SSSRSIVYCGSSDGLVNFWEREKQLS-HGGVLKGH-KLAVLCLAA-AGK--LVFSGSADKTICVWRRDGAIHTCLSVLTG 326 (368)
Q Consensus 252 ~~~~~~l~~~~~dg~i~i~d~~~~~~-~~~~~~~~-~~~~~~~~~-~~~--~l~~~~~dg~i~iw~~~~~~~~~~~~~~~ 326 (368)
..++..++.+.++|.++...+..... ......+. .....++.. +.. +|+.|+.-|.=.++.+.......+..+.
T Consensus 219 ~~~~~~~lL~~e~G~l~~l~l~~~~~~i~i~~~g~~~~~~s~l~~l~~g~d~lf~gs~~gds~l~~~~~~~l~~~~~~~- 297 (504)
T PF10433_consen 219 DKDGDRILLQDEDGDLYLLTLDNDGGSISITYLGTLCSIASSLTYLKNGGDYLFVGSEFGDSQLLQISLSNLEVLDSLP- 297 (504)
T ss_dssp STTSSEEEEEETTSEEEEEEEEEEEEEEEEEEEEE--S-ESEEEEESTT--EEEEEESSS-EEEEEEESESEEEEEEE--
T ss_pred cCCCCEEEEEeCCCeEEEEEEEECCCeEEEEEcCCcCChhheEEEEcCCCEEEEEEEecCCcEEEEEeCCCcEEEEecc-
Confidence 45677889999999999887765331 11111111 222234443 444 8888887555444444554445555554
Q ss_pred cccCeeEEEEecC
Q 047325 327 HTGPVKCLAVEED 339 (368)
Q Consensus 327 h~~~v~~l~~~~~ 339 (368)
.-+||.++++.+.
T Consensus 298 N~~Pi~D~~v~~~ 310 (504)
T PF10433_consen 298 NWGPIVDFCVVDS 310 (504)
T ss_dssp ---SEEEEEEE-T
T ss_pred CcCCccceEEecc
Confidence 5678999998643
No 491
>KOG3522 consensus Predicted guanine nucleotide exchange factor [Signal transduction mechanisms]
Probab=76.46 E-value=54 Score=31.30 Aligned_cols=109 Identities=17% Similarity=0.143 Sum_probs=62.6
Q ss_pred CCEeEEEEcCCCCEEEEEeCCCcEEE--------EEccCCeEEEEeecCCCceEEEEeCCCCeEEEEcCCCeEEEEEcCC
Q 047325 155 DAVSCMSLDQDCGLLYTASWDRTFKV--------WRISDSKCLESVSAHDDAVNSVVSSSEGLIFTGSADGTVKVWKREQ 226 (368)
Q Consensus 155 ~~v~~~~~~~~~~~l~~~~~d~~i~i--------wd~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~dg~i~i~d~~~ 226 (368)
..+.++.+++. -+..|.-||++-. ||.+ +...+.....++...++..| ++.++.+|.|.++...+
T Consensus 582 ~~v~~l~~ss~--Slgagl~dgt~a~y~rap~gSwd~e---p~~~~~~g~lPvrsla~~ed--~~was~gG~V~vi~~tt 654 (925)
T KOG3522|consen 582 ESVKLLLFSSG--SLGAGLIDGTLAVYGRAPSGSWDGE---PNISIPTGSLPVRSLAFQED--FVWASEGGCVHVIPSTT 654 (925)
T ss_pred hhhhhhhcccc--ccccCccCCccccccCCCCCCCCCC---CccccccCCccccchhhhhc--eeeeecCCceEEEechh
Confidence 34555555542 2444444554443 4433 33333444567777777665 56678899999999876
Q ss_pred CCCCcccccceeeccccccEEEEEEcCCCCEEEEecCCCcEEEEeCCC
Q 047325 227 HGKGTKHSLAQTLLKQECAVTALVVSSSRSIVYCGSSDGLVNFWEREK 274 (368)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~ 274 (368)
..... .......+...|+++.+..++-+++..+.| .+++++.++
T Consensus 655 ~~~~~---~leahqee~~~Vthm~~~~~gVwvafasG~-~~rlfhtet 698 (925)
T KOG3522|consen 655 FIRSW---DLEAHQEEAHSVTHMLYLDNGVWVAFASGD-EERLFHTET 698 (925)
T ss_pred ccccc---hhHHHHhhcceEEEEEeeCCceEEEEcCCC-EEEEecccc
Confidence 53211 122233456679999988776666555443 455556554
No 492
>PF14779 BBS1: Ciliary BBSome complex subunit 1
Probab=76.31 E-value=39 Score=27.27 Aligned_cols=70 Identities=13% Similarity=0.101 Sum_probs=49.9
Q ss_pred cCCCEeEEEEcC-------CCCEEEEEeCCCcEEEEEccCCeEEEEeecCCCceEEE---EeC-CCCeEEEEcCCCeEEE
Q 047325 153 HSDAVSCMSLDQ-------DCGLLYTASWDRTFKVWRISDSKCLESVSAHDDAVNSV---VSS-SEGLIFTGSADGTVKV 221 (368)
Q Consensus 153 ~~~~v~~~~~~~-------~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~---~~~-~~~~l~~~~~dg~i~i 221 (368)
....|+|++--. .-..|+.|.++|.|.|.|......+..++-..-++.-. .+. -|..+++++.||.|++
T Consensus 175 ~~t~ITcm~tikk~~~d~~a~scLViGTE~~~i~iLd~~af~il~~~~lpsvPv~i~~~G~~devdyRI~Va~Rdg~iy~ 254 (257)
T PF14779_consen 175 RQTVITCMATIKKSSADEDAVSCLVIGTESGEIYILDPQAFTILKQVQLPSVPVFISVSGQYDEVDYRIVVACRDGKIYT 254 (257)
T ss_pred cCceeEEeeeecccccCCCCcceEEEEecCCeEEEECchhheeEEEEecCCCceEEEEEeeeeccceEEEEEeCCCEEEE
Confidence 456788887643 12479999999999999998888887777555544222 232 3348899999999876
Q ss_pred E
Q 047325 222 W 222 (368)
Q Consensus 222 ~ 222 (368)
.
T Consensus 255 i 255 (257)
T PF14779_consen 255 I 255 (257)
T ss_pred E
Confidence 4
No 493
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=75.62 E-value=59 Score=28.99 Aligned_cols=55 Identities=7% Similarity=-0.000 Sum_probs=37.0
Q ss_pred cCCCEeEEEEcCCCCEEEEEeCCCcEEEEEccCCeE--EEEee-----cCCCceEEEEeCCC
Q 047325 153 HSDAVSCMSLDQDCGLLYTASWDRTFKVWRISDSKC--LESVS-----AHDDAVNSVVSSSE 207 (368)
Q Consensus 153 ~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~--~~~~~-----~~~~~v~~~~~~~~ 207 (368)
.-..-+.|+|.|++++|++--..|.|++++..++.. +..+. ........|+++|+
T Consensus 28 GL~~Pw~maflPDG~llVtER~~G~I~~v~~~~~~~~~~~~l~~v~~~~ge~GLlglal~Pd 89 (454)
T TIGR03606 28 GLNKPWALLWGPDNQLWVTERATGKILRVNPETGEVKVVFTLPEIVNDAQHNGLLGLALHPD 89 (454)
T ss_pred CCCCceEEEEcCCCeEEEEEecCCEEEEEeCCCCceeeeecCCceeccCCCCceeeEEECCC
Confidence 445678899999997666654469999998655432 22121 13566788999876
No 494
>KOG4659 consensus Uncharacterized conserved protein (Rhs family) [Function unknown]
Probab=74.09 E-value=1.1e+02 Score=31.29 Aligned_cols=84 Identities=8% Similarity=-0.101 Sum_probs=47.3
Q ss_pred CCCceeeeccCcCCcEEEEEecCC---------EEEEccCCCcEEEEcCCcceeccc-CCCCCeeEEEEe----CCEEEE
Q 047325 32 PQNGLIGSLVREEGHIYSLAASKD---------LLYTGSDSKNIRVWKNLKEFCGFK-ASSGLVKAIVIS----GEKIFT 97 (368)
Q Consensus 32 ~~~~~~~~~~~h~~~i~~~~~~~~---------~l~s~~~dg~i~iw~~~~~~~~~~-~~~~~v~~~~~~----~~~l~s 97 (368)
|.--...-..||...|.|...+|. .-++.+-||.+.|=|..-....+. +....|..+... .-++|.
T Consensus 335 Prvitt~mgdG~qR~veC~~C~G~a~~~~L~aPvala~a~DGSl~VGDfNyIRRI~~dg~v~tIl~L~~t~~sh~Yy~Av 414 (1899)
T KOG4659|consen 335 PRVITTAMGDGHQRDVECPKCEGKADSISLFAPVALAYAPDGSLIVGDFNYIRRISQDGQVSTILTLGLTDTSHSYYIAV 414 (1899)
T ss_pred CceEEEeccCcccccccCCCCCCccccceeeceeeEEEcCCCcEEEccchheeeecCCCceEEEEEecCCCccceeEEEe
Confidence 333333446789999999988754 234567899999877542222221 111122222211 235666
Q ss_pred EeCCCeEEEEeecCCCcc
Q 047325 98 GHQDGKIRVWKISPKNQS 115 (368)
Q Consensus 98 ~~~dg~i~vw~~~~~~~~ 115 (368)
.--||++.+-|..+.+..
T Consensus 415 sPvdgtlyvSdp~s~qv~ 432 (1899)
T KOG4659|consen 415 SPVDGTLYVSDPLSKQVW 432 (1899)
T ss_pred cCcCceEEecCCCcceEE
Confidence 667888877766655543
No 495
>PF11635 Med16: Mediator complex subunit 16; InterPro: IPR021665 Mediator is a large complex of up to 33 proteins that is conserved from plants through fungi to humans - the number and representation of individual subunits varying with species [],[]. It is arranged into four different sections, a core, a head, a tail and a kinase-activity part, and the number of subunits within each of these is what varies with species. Overall, Mediator regulates the transcriptional activity of RNA polymerase II but it would appear that each of the four different sections has a slightly different function. Med16 is one of the subunits of the Tail portion of the Mediator complex and is required for lipopolysaccharide gene-expression []. Several members including the human protein, Q9Y2X0 from SWISSPROT, have one or more WD40 domains on them, PF00400 from PFAM.
Probab=73.90 E-value=72 Score=30.85 Aligned_cols=123 Identities=14% Similarity=0.056 Sum_probs=0.0
Q ss_pred CCEEEEEeCCC----eEEEEeecCCCccccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcCCCC
Q 047325 92 GEKIFTGHQDG----KIRVWKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCG 167 (368)
Q Consensus 92 ~~~l~s~~~dg----~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 167 (368)
...+++.+..+ .|.-|.+..................................... ..+.|.++....-+.
T Consensus 199 p~Ili~~~~~~~~~SiI~RweL~~~~~~lh~~F~ql~s~~~~~~~~~~~~~l~~~~~i~------~~~~V~si~~~~~~~ 272 (753)
T PF11635_consen 199 PEILIVYSSPNTPSSIIERWELREEQQPLHPAFQQLGSKKNSSSEPPPTYRLRRLDDIT------LNKRVVSITSPELDI 272 (753)
T ss_pred CeEEEEEEcCCCCCcEEEEEEEEccCcccchhhhhcCCCCcCCCCCCCceeEEEecccc------cCCeEEEEEecccCc
Q ss_pred EEEEEeCCCcEEEEEccCCeEEEEe----e---------------cCCCceEEEEeCCCC-eEEEEcCCCeEE
Q 047325 168 LLYTASWDRTFKVWRISDSKCLESV----S---------------AHDDAVNSVVSSSEG-LIFTGSADGTVK 220 (368)
Q Consensus 168 ~l~~~~~d~~i~iwd~~~~~~~~~~----~---------------~~~~~v~~~~~~~~~-~l~~~~~dg~i~ 220 (368)
.++..-.||+|.++|-.+.+.+... . .....+..++++|.+ .++.-..+|.+.
T Consensus 273 ~v~~~~~DGsI~~~dr~t~~~~~~~~~~~~~~~~v~s~~~~Gf~fp~~~~~~~vafSPt~c~~v~~~~~~~~~ 345 (753)
T PF11635_consen 273 VVAFAFSDGSIEFRDRNTMKELNETRTNGEPPNTVTSLFQAGFHFPCIQPPLHVAFSPTMCSLVQIDEDGKTK 345 (753)
T ss_pred EEEEEEcCCeEEEEecCcchhhcccccccCCccccccccccccccccCCCCceEEECcccceEEEEecCCCce
No 496
>PF01436 NHL: NHL repeat; InterPro: IPR001258 The NHL repeat, named after NCL-1, HT2A and Lin-41, is found largely in a large number of eukaryotic and prokaryotic proteins. For example, the repeat is found in a variety of enzymes of the copper type II, ascorbate-dependent monooxygenase family which catalyse the C terminus alpha-amidation of biological peptides []. In many it occurs in tandem arrays, for example in the ringfinger beta-box, coiled-coil (RBCC) eukaryotic growth regulators []. The 'Brain Tumor' protein (Brat) is one such growth regulator that contains a 6-bladed NHL-repeat beta-propeller [, ]. The NHL repeats are also found in serine/threonine protein kinase (STPK) in diverse range of pathogenic bacteria. These STPK are transmembrane receptors with a intracellular N-terminal kinase domain and extracellular C-terminal sensor domain. In the STPK, PknD, from Mycobacterium tuberculosis, the sensor domain forms a rigid, six-bladed b-propeller composed of NHL repeats with a flexible tether to the transmembrane domain.; GO: 0005515 protein binding; PDB: 3FVZ_A 3FW0_A 1RWL_A 1RWI_A 1Q7F_A.
Probab=73.33 E-value=8.9 Score=18.44 Aligned_cols=25 Identities=20% Similarity=0.244 Sum_probs=15.1
Q ss_pred EEEEEEcCCCCEEEEecCCCcEEEE
Q 047325 246 VTALVVSSSRSIVYCGSSDGLVNFW 270 (368)
Q Consensus 246 i~~~~~~~~~~~l~~~~~dg~i~i~ 270 (368)
...++.+++|+++++=+....|.+|
T Consensus 4 P~gvav~~~g~i~VaD~~n~rV~vf 28 (28)
T PF01436_consen 4 PHGVAVDSDGNIYVADSGNHRVQVF 28 (28)
T ss_dssp EEEEEEETTSEEEEEECCCTEEEEE
T ss_pred CcEEEEeCCCCEEEEECCCCEEEEC
Confidence 3556666666666666555555543
No 497
>PRK13615 lipoprotein LpqB; Provisional
Probab=72.35 E-value=52 Score=30.27 Aligned_cols=94 Identities=17% Similarity=0.132 Sum_probs=54.4
Q ss_pred EEEEEcCCCCEEEEecCCCcEEEEeCCCccccceeeeccceEEEEEEeCCCEEEEeeCCCeEEEEecCC-CceeeeEeee
Q 047325 247 TALVVSSSRSIVYCGSSDGLVNFWEREKQLSHGGVLKGHKLAVLCLAAAGKLVFSGSADKTICVWRRDG-AIHTCLSVLT 325 (368)
Q Consensus 247 ~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~-~~~~~~~~~~ 325 (368)
.+.+.++++..++....++.+.++....... ....+....--+|.+++ .+.+.-.+...++..... +....+ ...
T Consensus 337 ~s~avS~dg~~~A~v~~~~~l~vg~~~~~~~--~~~~~~~Lt~PS~d~~g-~vWtv~~g~~~~l~~~~~~G~~~~v-~v~ 412 (557)
T PRK13615 337 DAATLSADGRQAAVRNASGVWSVGDGDRDAV--LLDTRPGLVAPSLDAQG-YVWSTPASDPRGLVAWGPDGVGHPV-AVS 412 (557)
T ss_pred ccceEcCCCceEEEEcCCceEEEecCCCcce--eeccCCccccCcCcCCC-CEEEEeCCCceEEEEecCCCceEEe-ecc
Confidence 6788999999988887788787776552221 12333333334455555 555554433444444322 111111 122
Q ss_pred c-cccCeeEEEEecCCeeee
Q 047325 326 G-HTGPVKCLAVEEDRDSSS 344 (368)
Q Consensus 326 ~-h~~~v~~l~~~~~~~~~~ 344 (368)
. -...|+.+..|+||-.++
T Consensus 413 ~~~~~~I~~lrvSrDG~R~A 432 (557)
T PRK13615 413 WTATGRVVSLEVARDGARVL 432 (557)
T ss_pred ccCCCeeEEEEeCCCccEEE
Confidence 2 235799999999998655
No 498
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=72.30 E-value=60 Score=27.52 Aligned_cols=147 Identities=10% Similarity=0.093 Sum_probs=78.9
Q ss_pred CceEEEEeCCC-CeEEEEcCCCe------EEEEEcCCCCC-Ccccc--cceeeccc--------cccEEEEEEcCCCCEE
Q 047325 197 DAVNSVVSSSE-GLIFTGSADGT------VKVWKREQHGK-GTKHS--LAQTLLKQ--------ECAVTALVVSSSRSIV 258 (368)
Q Consensus 197 ~~v~~~~~~~~-~~l~~~~~dg~------i~i~d~~~~~~-~~~~~--~~~~~~~~--------~~~i~~~~~~~~~~~l 258 (368)
+.+..+.+.++ +.+++.+.+|. +..+++..... ..... ....+... ..-..+|++.+++.++
T Consensus 20 GGlSgl~~~~~~~~~~avSD~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~G~~~~~~~~D~Egi~~~~~g~~~ 99 (326)
T PF13449_consen 20 GGLSGLDYDPDDGRFYAVSDRGPNKGPPRFYTFRIDYDQGGIGGVTILDMIPLRDPDGQPFPKNGLDPEGIAVPPDGSFW 99 (326)
T ss_pred CcEeeEEEeCCCCEEEEEECCCCCCCCCcEEEEEeeccCCCccceEeccceeccCCCCCcCCcCCCChhHeEEecCCCEE
Confidence 45677777743 36666666666 65555543111 00000 00111111 1134578887788777
Q ss_pred EEecCC------CcEEEEeCCCcccccee-----e-----------eccceEEEEEEeCCCEEEEeeC-----CC-----
Q 047325 259 YCGSSD------GLVNFWEREKQLSHGGV-----L-----------KGHKLAVLCLAAAGKLVFSGSA-----DK----- 306 (368)
Q Consensus 259 ~~~~~d------g~i~i~d~~~~~~~~~~-----~-----------~~~~~~~~~~~~~~~~l~~~~~-----dg----- 306 (368)
++.-.+ ..|+.++.. +...... + ......-++++++|+.|+++.+ |+
T Consensus 100 is~E~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~E~~l~~d~~~~~~ 178 (326)
T PF13449_consen 100 ISSEGGRTGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAAMESPLKQDGPRANP 178 (326)
T ss_pred EEeCCccCCCCCCEEEEECCC-CcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEEECccccCCCccccc
Confidence 776666 678888866 2221111 1 1112234788899996666543 22
Q ss_pred ----eEEEEecCCCc-----eeeeEeeec-----cccCeeEEEEecCCeeee
Q 047325 307 ----TICVWRRDGAI-----HTCLSVLTG-----HTGPVKCLAVEEDRDSSS 344 (368)
Q Consensus 307 ----~i~iw~~~~~~-----~~~~~~~~~-----h~~~v~~l~~~~~~~~~~ 344 (368)
.++++.++... .+....+.. ....|..+.+-+++++++
T Consensus 179 ~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~~lLv 230 (326)
T PF13449_consen 179 DNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDGRLLV 230 (326)
T ss_pred ccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEECCCcEEE
Confidence 15666655332 222333332 456799999999998765
No 499
>PF08801 Nucleoporin_N: Nup133 N terminal like; InterPro: IPR014908 Nucleoporins are the main components of the nuclear pore complex (NPC) in eukaryotic cells, and mediate bidirectional nucleocytoplasmic transport, especially of mRNA and proteins. RNA undergoing nuclear export first encounters the basket of the nuclear pore and many nucleoporins are accessible on the basket side of the pore [, ]. This entry represents the N-terminal of Nucleoprotein which forms a seven-bladed beta propeller structure []. ; PDB: 1XKS_A.
Probab=72.03 E-value=71 Score=28.26 Aligned_cols=31 Identities=26% Similarity=0.537 Sum_probs=24.9
Q ss_pred ccEEEEEEcCCCCEEEEecCCCcEEEEeCCC
Q 047325 244 CAVTALVVSSSRSIVYCGSSDGLVNFWEREK 274 (368)
Q Consensus 244 ~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~ 274 (368)
..|..++..+..+.+++...+|.|.+|++..
T Consensus 190 ~~I~~v~~d~~r~~ly~l~~~~~Iq~w~l~~ 220 (422)
T PF08801_consen 190 PKIVQVAVDPSRRLLYTLTSDGSIQVWDLGP 220 (422)
T ss_dssp --EEEEEEETTTTEEEEEESSE-EEEEEE-S
T ss_pred hceeeEEecCCcCEEEEEeCCCcEEEEEEeC
Confidence 3488899999889999999999999999974
No 500
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=71.59 E-value=67 Score=27.78 Aligned_cols=196 Identities=15% Similarity=0.150 Sum_probs=95.0
Q ss_pred CCEEEEccCCCcEEEEcCCcceecccCCC----CCeeEE-EEeCCEEEEEeCCCeEEEEeecCCCccccccCCcccccee
Q 047325 54 KDLLYTGSDSKNIRVWKNLKEFCGFKASS----GLVKAI-VISGEKIFTGHQDGKIRVWKISPKNQSVHKRAGTLPTLKD 128 (368)
Q Consensus 54 ~~~l~s~~~dg~i~iw~~~~~~~~~~~~~----~~v~~~-~~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~ 128 (368)
...+..+..||.|.-.|..+......... ..+..- ......++.++.+|.+..+|..+++......... .
T Consensus 68 dg~v~~~~~~G~i~A~d~~~g~~~W~~~~~~~~~~~~~~~~~~~G~i~~g~~~g~~y~ld~~~G~~~W~~~~~~-~---- 142 (370)
T COG1520 68 DGTVYVGTRDGNIFALNPDTGLVKWSYPLLGAVAQLSGPILGSDGKIYVGSWDGKLYALDASTGTLVWSRNVGG-S---- 142 (370)
T ss_pred CCeEEEecCCCcEEEEeCCCCcEEecccCcCcceeccCceEEeCCeEEEecccceEEEEECCCCcEEEEEecCC-C----
Confidence 33666667888777777665443221111 111111 1124568899999988888887777655544321 0
Q ss_pred eeeccCCCCceeEecccceeeeeecCCCEeEEEEcCCCCEEEEEeCCCcEEEEEccCCeEEEEeecCC---CceEEEEeC
Q 047325 129 IFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCGLLYTASWDRTFKVWRISDSKCLESVSAHD---DAVNSVVSS 205 (368)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~---~~v~~~~~~ 205 (368)
-.+..-..-.++ .+..++.++.+...|..+++..-...... ..+..--..
T Consensus 143 --------------------------~~~~~~~v~~~~-~v~~~s~~g~~~al~~~tG~~~W~~~~~~~~~~~~~~~~~~ 195 (370)
T COG1520 143 --------------------------PYYASPPVVGDG-TVYVGTDDGHLYALNADTGTLKWTYETPAPLSLSIYGSPAI 195 (370)
T ss_pred --------------------------eEEecCcEEcCc-EEEEecCCCeEEEEEccCCcEEEEEecCCccccccccCcee
Confidence 000111111222 34444467888888888787765544322 111111113
Q ss_pred CCCeEEEEcC--CCeEEEEEcCCCCCCcccccceeecccccc--EEEEEEcC--CCCEEEEecCCCcEEEEeCCCccccc
Q 047325 206 SEGLIFTGSA--DGTVKVWKREQHGKGTKHSLAQTLLKQECA--VTALVVSS--SRSIVYCGSSDGLVNFWEREKQLSHG 279 (368)
Q Consensus 206 ~~~~l~~~~~--dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~--i~~~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~ 279 (368)
.++.++.+.. ++.+.-.|...+............ +.... ...+...+ .+..+..++.++.+...|..+++...
T Consensus 196 ~~~~vy~~~~~~~~~~~a~~~~~G~~~w~~~~~~~~-~~~~~~~~~~~~~~~v~v~~~~~~~~~~g~~~~l~~~~G~~~W 274 (370)
T COG1520 196 ASGTVYVGSDGYDGILYALNAEDGTLKWSQKVSQTI-GRTAISTTPAVDGGPVYVDGGVYAGSYGGKLLCLDADTGELIW 274 (370)
T ss_pred ecceEEEecCCCcceEEEEEccCCcEeeeeeeeccc-CcccccccccccCceEEECCcEEEEecCCeEEEEEcCCCceEE
Confidence 3446666665 566666666554321111111111 11000 00000000 11233566677778888888776664
Q ss_pred eee
Q 047325 280 GVL 282 (368)
Q Consensus 280 ~~~ 282 (368)
...
T Consensus 275 ~~~ 277 (370)
T COG1520 275 SFP 277 (370)
T ss_pred EEe
Confidence 433
Done!