Query 047325
Match_columns 368
No_of_seqs 740 out of 1676
Neff 11.9
Searched_HMMs 29240
Date Mon Mar 25 17:33:00 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047325.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/047325hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ow8_A WD repeat-containing pr 100.0 6E-50 2.1E-54 333.9 33.0 281 34-367 22-317 (321)
2 1vyh_C Platelet-activating fac 100.0 7.8E-50 2.7E-54 344.7 34.7 283 33-368 97-408 (410)
3 1got_B GT-beta; complex (GTP-b 100.0 2E-48 6.7E-53 328.0 36.9 286 34-368 45-340 (340)
4 2pbi_B Guanine nucleotide-bind 100.0 1.5E-47 5E-52 324.1 37.4 286 35-367 55-353 (354)
5 4gqb_B Methylosome protein 50; 100.0 1.6E-47 5.4E-52 321.5 32.7 277 41-367 27-327 (344)
6 2ynn_A Coatomer subunit beta'; 100.0 7.7E-47 2.6E-51 313.2 35.3 267 35-341 4-283 (304)
7 2hes_X YDR267CP; beta-propelle 100.0 5.3E-47 1.8E-51 317.8 33.8 295 32-367 2-324 (330)
8 3iz6_a 40S ribosomal protein R 100.0 2E-47 6.8E-52 326.7 29.0 290 33-367 55-371 (380)
9 4g56_B MGC81050 protein; prote 100.0 1E-46 3.5E-51 319.1 32.4 280 41-368 39-340 (357)
10 3frx_A Guanine nucleotide-bind 100.0 4.3E-46 1.5E-50 310.8 35.0 279 35-367 8-313 (319)
11 4ery_A WD repeat-containing pr 100.0 1.6E-45 5.5E-50 306.9 36.9 284 32-367 11-308 (312)
12 2xzm_R RACK1; ribosome, transl 100.0 8.4E-46 2.9E-50 312.4 34.6 281 34-367 11-336 (343)
13 3fm0_A Protein CIAO1; WDR39,SG 100.0 6.5E-46 2.2E-50 313.1 33.5 288 35-367 6-331 (345)
14 1nr0_A Actin interacting prote 100.0 3.7E-44 1.3E-48 324.7 36.4 319 31-367 177-607 (611)
15 4aow_A Guanine nucleotide-bind 100.0 6.6E-43 2.3E-47 294.7 35.6 281 34-367 28-333 (340)
16 1erj_A Transcriptional repress 100.0 6.3E-43 2.1E-47 300.2 35.4 279 41-367 61-385 (393)
17 2ymu_A WD-40 repeat protein; u 100.0 6.3E-43 2.2E-47 315.6 36.9 278 33-368 292-577 (577)
18 1nr0_A Actin interacting prote 100.0 8.5E-43 2.9E-47 315.8 36.8 285 29-367 44-351 (611)
19 2ynn_A Coatomer subunit beta'; 100.0 4.2E-43 1.4E-47 290.8 30.6 242 75-367 6-255 (304)
20 3zwl_B Eukaryotic translation 100.0 3.6E-42 1.2E-46 293.4 35.4 294 22-367 10-342 (369)
21 3dm0_A Maltose-binding peripla 100.0 1.9E-42 6.7E-47 318.4 34.1 280 35-367 373-689 (694)
22 1sq9_A Antiviral protein SKI8; 100.0 2.1E-42 7.1E-47 297.9 31.7 294 36-367 8-391 (397)
23 4e54_B DNA damage-binding prot 100.0 2.4E-42 8.1E-47 300.7 27.0 285 33-367 108-426 (435)
24 3ei3_B DNA damage-binding prot 100.0 1.7E-41 5.7E-46 290.9 31.7 286 30-367 59-378 (383)
25 2ymu_A WD-40 repeat protein; u 100.0 6E-41 2.1E-45 302.7 36.5 277 33-367 251-535 (577)
26 1gxr_A ESG1, transducin-like e 100.0 1.6E-40 5.3E-45 279.8 35.4 278 35-367 42-333 (337)
27 2ovr_B FBW7, F-BOX/WD repeat p 100.0 2.1E-40 7.3E-45 289.5 36.8 273 33-363 148-430 (445)
28 3ow8_A WD repeat-containing pr 100.0 4.7E-41 1.6E-45 280.2 31.1 239 36-313 72-319 (321)
29 3gre_A Serine/threonine-protei 100.0 3.1E-41 1.1E-45 294.2 30.9 294 32-368 50-437 (437)
30 1vyh_C Platelet-activating fac 100.0 4.3E-41 1.5E-45 290.2 30.6 240 75-367 101-365 (410)
31 1k8k_C P40, ARP2/3 complex 41 100.0 9.2E-41 3.1E-45 285.1 32.2 285 40-368 4-358 (372)
32 2pm9_A Protein WEB1, protein t 100.0 3.8E-41 1.3E-45 291.8 29.8 287 41-368 64-411 (416)
33 3i2n_A WD repeat-containing pr 100.0 6E-41 2.1E-45 284.6 28.3 281 37-367 11-349 (357)
34 2ovr_B FBW7, F-BOX/WD repeat p 100.0 6.8E-40 2.3E-44 286.3 35.7 259 35-339 109-373 (445)
35 1p22_A F-BOX/WD-repeat protein 100.0 1.5E-40 5E-45 289.6 30.8 271 39-367 128-410 (435)
36 4gqb_B Methylosome protein 50; 100.0 2.7E-40 9.1E-45 277.6 30.7 237 40-316 78-332 (344)
37 3v7d_B Cell division control p 100.0 1.1E-39 3.6E-44 286.8 34.4 279 36-358 113-422 (464)
38 1got_B GT-beta; complex (GTP-b 100.0 6.6E-40 2.3E-44 276.0 31.3 243 31-312 84-340 (340)
39 3odt_A Protein DOA1; ubiquitin 100.0 2.3E-39 8E-44 269.8 34.0 265 32-342 6-280 (313)
40 3k26_A Polycomb protein EED; W 100.0 2.2E-40 7.6E-45 282.0 28.4 283 39-367 13-362 (366)
41 4h5i_A Guanine nucleotide-exch 100.0 9.2E-40 3.1E-44 277.2 31.4 281 44-367 14-339 (365)
42 3dwl_C Actin-related protein 2 100.0 2.3E-41 7.7E-46 289.5 21.6 290 40-368 7-376 (377)
43 2pm7_B Protein transport prote 100.0 1.3E-39 4.5E-44 268.9 31.0 247 37-315 2-285 (297)
44 4aez_A CDC20, WD repeat-contai 100.0 2.1E-39 7.1E-44 279.3 32.8 279 37-367 84-376 (401)
45 4a11_B DNA excision repair pro 100.0 2.9E-39 1E-43 279.2 32.4 280 31-345 30-351 (408)
46 1r5m_A SIR4-interacting protei 100.0 2.8E-39 9.7E-44 280.7 31.5 273 40-367 41-357 (425)
47 3bg1_A Protein SEC13 homolog; 100.0 3.2E-40 1.1E-44 274.9 24.0 243 39-314 8-292 (316)
48 1yfq_A Cell cycle arrest prote 100.0 2.5E-39 8.6E-44 273.0 29.5 270 38-363 5-315 (342)
49 2pm9_A Protein WEB1, protein t 100.0 4.9E-40 1.7E-44 284.9 25.6 276 44-367 12-333 (416)
50 2pm7_B Protein transport prote 100.0 5E-39 1.7E-43 265.4 29.9 246 76-367 3-281 (297)
51 3fm0_A Protein CIAO1; WDR39,SG 100.0 2.5E-39 8.6E-44 272.9 28.6 250 74-355 7-281 (345)
52 1r5m_A SIR4-interacting protei 100.0 2.3E-39 7.9E-44 281.2 27.8 288 43-368 107-422 (425)
53 3vl1_A 26S proteasome regulato 100.0 9.3E-39 3.2E-43 277.2 31.5 266 37-341 91-398 (420)
54 2hes_X YDR267CP; beta-propelle 100.0 9.9E-39 3.4E-43 267.6 30.4 236 74-341 6-263 (330)
55 3v7d_B Cell division control p 100.0 4.2E-38 1.4E-42 276.6 35.0 288 30-339 148-444 (464)
56 3frx_A Guanine nucleotide-bind 100.0 2.9E-38 1E-42 263.4 31.5 243 75-355 10-265 (319)
57 4gga_A P55CDC, cell division c 100.0 3.3E-38 1.1E-42 273.4 33.0 270 47-367 108-391 (420)
58 2aq5_A Coronin-1A; WD40 repeat 100.0 7.5E-38 2.6E-42 269.8 34.6 280 47-358 37-343 (402)
59 2j04_B YDR362CP, TAU91; beta p 100.0 5.2E-40 1.8E-44 289.1 21.3 279 38-367 201-513 (524)
60 4g56_B MGC81050 protein; prote 100.0 7.7E-39 2.6E-43 270.9 27.2 241 36-316 86-344 (357)
61 3vl1_A 26S proteasome regulato 100.0 2.4E-38 8.2E-43 274.6 30.6 258 47-344 59-350 (420)
62 3dw8_B Serine/threonine-protei 100.0 2.8E-38 9.5E-43 276.5 30.3 302 42-348 26-436 (447)
63 2pbi_B Guanine nucleotide-bind 100.0 5.5E-38 1.9E-42 265.5 30.7 243 31-312 93-354 (354)
64 1gxr_A ESG1, transducin-like e 100.0 4.2E-38 1.5E-42 264.9 30.0 276 43-367 8-292 (337)
65 4ery_A WD repeat-containing pr 100.0 6.9E-38 2.4E-42 260.8 30.0 241 75-367 16-264 (312)
66 1erj_A Transcriptional repress 100.0 1.3E-37 4.3E-42 267.2 32.0 236 46-315 125-389 (393)
67 3bg1_A Protein SEC13 homolog; 100.0 5.2E-39 1.8E-43 267.6 22.4 246 77-367 8-289 (316)
68 3mmy_A MRNA export factor; mRN 100.0 1.2E-37 4.1E-42 265.3 31.1 285 29-366 24-341 (368)
69 4ggc_A P55CDC, cell division c 100.0 3E-37 1E-41 257.6 32.7 271 47-368 28-312 (318)
70 3mkq_A Coatomer beta'-subunit; 100.0 1.1E-37 3.7E-42 292.4 31.6 266 35-341 4-283 (814)
71 2xzm_R RACK1; ribosome, transl 100.0 3.2E-37 1.1E-41 260.0 31.3 253 74-359 13-287 (343)
72 3sfz_A APAF-1, apoptotic pepti 100.0 8.7E-38 3E-42 305.3 31.6 285 36-367 607-909 (1249)
73 2oaj_A Protein SNI1; WD40 repe 100.0 3.6E-37 1.2E-41 288.7 32.0 195 40-274 13-242 (902)
74 3iz6_a 40S ribosomal protein R 100.0 2.7E-38 9.2E-43 270.2 22.2 246 65-345 47-315 (380)
75 3f3f_A Nucleoporin SEH1; struc 100.0 9.4E-38 3.2E-42 263.9 24.9 288 38-367 5-333 (351)
76 3sfz_A APAF-1, apoptotic pepti 100.0 5.4E-37 1.8E-41 299.8 33.7 286 29-354 642-1031(1249)
77 1pgu_A Actin interacting prote 100.0 1.7E-36 5.7E-41 275.7 33.8 287 35-367 54-398 (615)
78 3jrp_A Fusion protein of prote 100.0 9.1E-37 3.1E-41 260.9 29.1 248 35-314 2-286 (379)
79 4aez_A CDC20, WD repeat-contai 100.0 6.4E-36 2.2E-40 257.5 31.8 248 31-316 120-381 (401)
80 2oaj_A Protein SNI1; WD40 repe 100.0 4.8E-36 1.6E-40 281.1 33.4 315 39-367 146-657 (902)
81 1p22_A F-BOX/WD-repeat protein 100.0 2.1E-36 7.3E-41 263.3 28.2 247 30-316 159-415 (435)
82 3jrp_A Fusion protein of prote 100.0 2.4E-36 8.1E-41 258.4 27.5 248 75-356 4-286 (379)
83 1pgu_A Actin interacting prote 100.0 6.2E-36 2.1E-40 271.9 31.7 161 34-227 106-284 (615)
84 2j04_B YDR362CP, TAU91; beta p 100.0 1.1E-36 3.6E-41 268.1 23.2 229 91-367 172-424 (524)
85 4gga_A P55CDC, cell division c 100.0 5.1E-35 1.8E-39 253.4 31.7 266 31-337 132-415 (420)
86 3dm0_A Maltose-binding peripla 100.0 2.7E-35 9.4E-40 270.9 31.7 244 34-314 420-692 (694)
87 3dwl_C Actin-related protein 2 100.0 8.3E-37 2.9E-41 261.1 19.5 236 78-347 7-270 (377)
88 3lrv_A PRE-mRNA-splicing facto 100.0 3.5E-36 1.2E-40 253.7 21.7 271 53-358 47-332 (343)
89 2j04_A TAU60, YPL007P, hypothe 100.0 1.9E-35 6.6E-40 254.3 25.9 266 40-355 11-295 (588)
90 1k8k_C P40, ARP2/3 complex 41 100.0 7.6E-35 2.6E-39 248.5 29.1 246 36-316 44-362 (372)
91 3k26_A Polycomb protein EED; W 100.0 1.4E-35 4.6E-40 252.4 23.6 236 77-345 13-304 (366)
92 1sq9_A Antiviral protein SKI8; 100.0 1.6E-34 5.5E-39 248.7 30.5 254 35-316 53-396 (397)
93 3vu4_A KMHSV2; beta-propeller 100.0 3.9E-35 1.3E-39 248.1 25.8 285 33-358 8-337 (355)
94 3jro_A Fusion protein of prote 100.0 2.6E-35 9E-40 272.5 25.2 247 37-315 2-285 (753)
95 4aow_A Guanine nucleotide-bind 100.0 6.8E-34 2.3E-38 239.6 31.5 245 33-316 75-338 (340)
96 3odt_A Protein DOA1; ubiquitin 100.0 5.7E-34 1.9E-38 237.2 30.2 243 30-317 45-298 (313)
97 3gre_A Serine/threonine-protei 100.0 2.2E-35 7.7E-40 257.3 21.8 252 68-367 47-355 (437)
98 4h5i_A Guanine nucleotide-exch 100.0 1.3E-34 4.4E-39 245.6 25.3 241 39-315 68-343 (365)
99 2xyi_A Probable histone-bindin 100.0 4.8E-34 1.7E-38 247.9 28.6 248 38-315 122-410 (430)
100 3mkq_A Coatomer beta'-subunit; 100.0 2.2E-34 7.7E-39 270.0 27.8 242 75-367 6-255 (814)
101 4e54_B DNA damage-binding prot 100.0 6.2E-35 2.1E-39 253.9 21.8 252 77-367 114-383 (435)
102 3zwl_B Eukaryotic translation 100.0 6.7E-33 2.3E-37 236.0 33.7 258 29-316 59-347 (369)
103 3jro_A Fusion protein of prote 100.0 1.4E-34 4.6E-39 267.7 24.9 246 76-367 3-281 (753)
104 2aq5_A Coronin-1A; WD40 repeat 100.0 3.5E-34 1.2E-38 246.9 25.3 250 36-321 73-348 (402)
105 2xyi_A Probable histone-bindin 100.0 3.4E-34 1.2E-38 248.8 25.1 255 77-367 123-406 (430)
106 3i2n_A WD repeat-containing pr 100.0 3.4E-34 1.2E-38 243.0 24.0 241 77-357 13-291 (357)
107 3ei3_B DNA damage-binding prot 100.0 1.4E-33 4.9E-38 241.5 27.5 204 75-316 66-283 (383)
108 4gq1_A NUP37; propeller, trans 100.0 1E-34 3.5E-39 248.9 20.3 226 92-347 101-378 (393)
109 4ggc_A P55CDC, cell division c 100.0 9.5E-33 3.3E-37 230.3 31.5 248 30-316 51-316 (318)
110 2vdu_B TRNA (guanine-N(7)-)-me 100.0 2.5E-33 8.7E-38 245.0 29.2 228 81-346 101-372 (450)
111 3dw8_B Serine/threonine-protei 100.0 1.4E-33 4.7E-38 246.7 24.4 248 79-367 25-369 (447)
112 1yfq_A Cell cycle arrest prote 100.0 6.8E-33 2.3E-37 233.6 24.4 246 77-367 6-278 (342)
113 2w18_A PALB2, fancn, partner a 100.0 1.2E-32 4.2E-37 222.8 22.0 285 34-368 25-354 (356)
114 4a11_B DNA excision repair pro 100.0 1E-31 3.6E-36 231.8 28.6 277 41-367 96-401 (408)
115 2j04_A TAU60, YPL007P, hypothe 100.0 3.5E-33 1.2E-37 240.3 17.5 248 42-347 83-349 (588)
116 3bws_A Protein LP49; two-domai 100.0 8.6E-31 2.9E-35 228.0 32.5 277 35-367 114-428 (433)
117 3mmy_A MRNA export factor; mRN 100.0 2E-31 7E-36 226.8 27.0 243 73-367 30-300 (368)
118 1l0q_A Surface layer protein; 100.0 8.6E-30 2.9E-34 218.7 33.8 243 56-343 4-258 (391)
119 2vdu_B TRNA (guanine-N(7)-)-me 100.0 1E-30 3.4E-35 228.5 27.7 201 151-355 99-337 (450)
120 3lrv_A PRE-mRNA-splicing facto 100.0 8.2E-31 2.8E-35 220.9 25.0 231 45-314 77-332 (343)
121 1l0q_A Surface layer protein; 100.0 3.6E-29 1.2E-33 214.8 35.5 254 31-330 19-288 (391)
122 4gq1_A NUP37; propeller, trans 100.0 4.3E-31 1.5E-35 226.5 21.0 218 56-313 103-387 (393)
123 3vu4_A KMHSV2; beta-propeller 100.0 4.2E-30 1.4E-34 217.2 26.0 233 73-367 10-267 (355)
124 3f3f_A Nucleoporin SEH1; struc 100.0 1.7E-29 5.6E-34 213.3 26.9 207 149-367 6-245 (351)
125 2w18_A PALB2, fancn, partner a 100.0 4.8E-29 1.6E-33 201.9 21.4 237 35-313 77-355 (356)
126 3bws_A Protein LP49; two-domai 100.0 5.5E-27 1.9E-31 204.0 30.6 236 39-315 164-432 (433)
127 2hqs_A Protein TOLB; TOLB, PAL 100.0 1.5E-27 5.1E-32 205.6 26.1 265 32-341 103-410 (415)
128 2hqs_A Protein TOLB; TOLB, PAL 100.0 1.8E-27 6.2E-32 205.1 26.5 259 45-348 63-373 (415)
129 1nir_A Nitrite reductase; hemo 100.0 1.5E-26 5.2E-31 205.2 25.5 274 47-359 142-460 (543)
130 2ojh_A Uncharacterized protein 99.9 1.6E-25 5.5E-30 184.4 23.3 245 59-342 17-285 (297)
131 1ri6_A Putative isomerase YBHE 99.9 1.5E-24 5.1E-29 182.6 26.8 267 56-355 7-306 (343)
132 3u4y_A Uncharacterized protein 99.9 9E-24 3.1E-28 177.0 27.9 265 56-355 12-302 (331)
133 2ecf_A Dipeptidyl peptidase IV 99.9 7.7E-24 2.6E-28 196.6 27.3 271 44-357 36-413 (741)
134 3vgz_A Uncharacterized protein 99.9 9.7E-22 3.3E-26 166.1 32.2 266 44-343 40-328 (353)
135 1k32_A Tricorn protease; prote 99.9 2.6E-22 8.9E-27 192.5 28.4 272 37-346 196-489 (1045)
136 1nir_A Nitrite reductase; hemo 99.9 6E-22 2E-26 175.8 28.1 282 30-344 165-494 (543)
137 1ri6_A Putative isomerase YBHE 99.9 1E-21 3.4E-26 165.3 28.1 269 41-341 34-335 (343)
138 1xfd_A DIP, dipeptidyl aminope 99.9 9.3E-23 3.2E-27 188.8 21.9 281 46-358 18-394 (723)
139 1pby_B Quinohemoprotein amine 99.9 3.2E-22 1.1E-26 167.9 22.6 259 55-355 2-308 (337)
140 2z3z_A Dipeptidyl aminopeptida 99.9 3.8E-23 1.3E-27 190.8 18.3 282 31-356 14-388 (706)
141 2oit_A Nucleoporin 214KDA; NH2 99.9 4.3E-22 1.5E-26 172.1 22.6 222 64-316 23-279 (434)
142 3hfq_A Uncharacterized protein 99.9 2.8E-21 9.6E-26 162.9 26.4 261 61-355 13-315 (347)
143 2z3z_A Dipeptidyl aminopeptida 99.9 5E-22 1.7E-26 183.3 23.1 273 45-346 82-418 (706)
144 2ecf_A Dipeptidyl peptidase IV 99.9 1.5E-21 5.1E-26 181.2 24.5 272 47-346 111-442 (741)
145 1xfd_A DIP, dipeptidyl aminope 99.9 2.1E-21 7.2E-26 179.7 25.0 286 30-345 43-426 (723)
146 1k32_A Tricorn protease; prote 99.9 4.5E-21 1.6E-25 183.9 27.9 296 36-347 44-439 (1045)
147 3o4h_A Acylamino-acid-releasin 99.9 2.4E-21 8.3E-26 174.7 24.1 252 44-348 21-301 (582)
148 3scy_A Hypothetical bacterial 99.9 9.4E-20 3.2E-24 154.4 32.0 276 43-337 48-360 (361)
149 2ojh_A Uncharacterized protein 99.9 1.5E-21 5.1E-26 160.6 17.9 211 97-348 17-236 (297)
150 1pby_B Quinohemoprotein amine 99.9 1.5E-20 5.1E-25 157.7 24.3 251 32-327 19-320 (337)
151 3u4y_A Uncharacterized protein 99.9 5.3E-20 1.8E-24 154.1 27.5 249 30-316 26-305 (331)
152 2oit_A Nucleoporin 214KDA; NH2 99.9 8.5E-22 2.9E-26 170.3 16.4 187 154-345 36-257 (434)
153 3vgz_A Uncharacterized protein 99.9 9.3E-20 3.2E-24 153.9 25.8 219 82-343 40-286 (353)
154 3scy_A Hypothetical bacterial 99.9 3E-19 1E-23 151.3 28.5 262 61-355 24-335 (361)
155 3hfq_A Uncharacterized protein 99.9 1E-18 3.6E-23 147.2 29.0 254 40-315 35-317 (347)
156 1jmx_B Amine dehydrogenase; ox 99.9 7.2E-20 2.5E-24 154.3 21.4 239 54-325 11-333 (349)
157 1jmx_B Amine dehydrogenase; ox 99.9 9.6E-20 3.3E-24 153.5 21.2 211 92-345 11-311 (349)
158 3o4h_A Acylamino-acid-releasin 99.8 2.9E-20 9.9E-25 167.7 16.0 215 81-345 20-262 (582)
159 3pe7_A Oligogalacturonate lyas 99.8 3.1E-18 1.1E-22 146.6 27.2 271 32-345 18-367 (388)
160 1jof_A Carboxy-CIS,CIS-muconat 99.8 7.6E-19 2.6E-23 149.0 22.3 238 82-355 39-339 (365)
161 1z68_A Fibroblast activation p 99.8 2.2E-19 7.6E-24 166.0 20.1 271 49-357 20-391 (719)
162 1z68_A Fibroblast activation p 99.8 1.8E-18 6.1E-23 160.0 19.8 282 31-345 43-426 (719)
163 3azo_A Aminopeptidase; POP fam 99.8 1.4E-17 4.9E-22 152.5 23.9 284 38-355 17-365 (662)
164 2dg1_A DRP35, lactonase; beta 99.8 1.1E-16 3.6E-21 134.1 26.3 257 45-344 6-295 (333)
165 1q7f_A NHL, brain tumor CG1071 99.8 9.8E-16 3.4E-20 125.3 31.4 232 41-315 26-280 (286)
166 1jof_A Carboxy-CIS,CIS-muconat 99.8 1E-16 3.4E-21 135.9 25.4 244 43-316 38-342 (365)
167 1q7f_A NHL, brain tumor CG1071 99.8 6.4E-16 2.2E-20 126.4 27.6 223 80-342 27-264 (286)
168 3fvz_A Peptidyl-glycine alpha- 99.8 4.5E-16 1.5E-20 129.9 25.2 255 44-353 23-316 (329)
169 3c5m_A Oligogalacturonate lyas 99.8 4.9E-17 1.7E-21 139.4 18.3 295 34-356 20-381 (396)
170 3azo_A Aminopeptidase; POP fam 99.8 3.6E-16 1.2E-20 143.3 25.1 239 37-316 60-370 (662)
171 2oiz_A Aromatic amine dehydrog 99.7 1E-15 3.6E-20 129.1 25.0 248 62-341 29-360 (361)
172 4a5s_A Dipeptidyl peptidase 4 99.7 2.1E-16 7.1E-21 146.4 21.8 237 83-355 17-349 (740)
173 4a5s_A Dipeptidyl peptidase 4 99.7 1.7E-16 5.8E-21 146.9 20.8 247 46-335 18-370 (740)
174 3pe7_A Oligogalacturonate lyas 99.7 4.5E-16 1.5E-20 133.1 19.4 231 75-345 23-306 (388)
175 2z2n_A Virginiamycin B lyase; 99.7 3.5E-13 1.2E-17 110.7 35.1 263 40-345 10-282 (299)
176 3fvz_A Peptidyl-glycine alpha- 99.7 1.3E-14 4.3E-19 121.1 26.5 224 62-315 67-322 (329)
177 3dsm_A Uncharacterized protein 99.7 5.6E-15 1.9E-19 123.0 24.3 241 61-345 14-284 (328)
178 3e5z_A Putative gluconolactona 99.7 1E-14 3.4E-19 119.9 25.2 222 77-346 22-274 (296)
179 2gop_A Trilobed protease; beta 99.7 8.3E-15 2.8E-19 123.2 23.3 249 47-355 17-329 (347)
180 3no2_A Uncharacterized protein 99.7 8E-15 2.7E-19 118.6 20.6 216 92-346 5-230 (276)
181 2dg1_A DRP35, lactonase; beta 99.7 6.4E-13 2.2E-17 111.0 32.3 239 33-305 33-300 (333)
182 1rwi_B Serine/threonine-protei 99.7 2.5E-14 8.6E-19 115.8 22.8 179 155-342 67-247 (270)
183 3e5z_A Putative gluconolactona 99.7 2.9E-14 9.8E-19 117.2 23.3 247 32-315 15-286 (296)
184 1rwi_B Serine/threonine-protei 99.7 1.2E-13 4.2E-18 111.7 25.5 231 46-316 25-265 (270)
185 1qks_A Cytochrome CD1 nitrite 99.7 1.2E-13 4E-18 122.5 26.9 252 55-345 168-456 (567)
186 2qc5_A Streptogramin B lactona 99.6 1.8E-11 6.3E-16 100.4 35.3 260 43-344 18-287 (300)
187 2gop_A Trilobed protease; beta 99.6 1.3E-13 4.3E-18 116.0 22.4 180 156-356 60-290 (347)
188 2oiz_A Aromatic amine dehydrog 99.6 1.2E-13 4.1E-18 116.5 21.8 190 159-358 54-335 (361)
189 3dsm_A Uncharacterized protein 99.6 2.6E-12 8.8E-17 107.0 28.6 250 45-337 44-320 (328)
190 3c5m_A Oligogalacturonate lyas 99.6 1.4E-14 4.7E-19 124.2 14.6 215 85-345 38-299 (396)
191 2xdw_A Prolyl endopeptidase; a 99.6 2.2E-13 7.7E-18 125.6 22.7 223 81-344 123-395 (710)
192 2xdw_A Prolyl endopeptidase; a 99.6 4.9E-13 1.7E-17 123.3 24.6 200 153-355 123-364 (710)
193 3no2_A Uncharacterized protein 99.6 1.4E-12 4.9E-17 105.3 23.4 229 55-327 6-262 (276)
194 2bkl_A Prolyl endopeptidase; m 99.6 2.3E-13 8E-18 125.1 21.0 224 80-344 118-378 (695)
195 2z2n_A Virginiamycin B lyase; 99.6 1.3E-11 4.6E-16 101.2 28.9 225 80-346 12-242 (299)
196 1pjx_A Dfpase, DIISOPROPYLFLUO 99.6 9E-12 3.1E-16 103.1 27.1 239 45-315 18-299 (314)
197 2bkl_A Prolyl endopeptidase; m 99.5 9.8E-13 3.3E-17 121.0 22.6 244 42-319 118-401 (695)
198 1xip_A Nucleoporin NUP159; bet 99.5 1E-13 3.4E-18 116.0 13.8 173 46-260 39-230 (388)
199 3g4e_A Regucalcin; six bladed 99.5 2.7E-11 9.3E-16 99.3 27.4 215 84-342 14-255 (297)
200 1pjx_A Dfpase, DIISOPROPYLFLUO 99.5 4.5E-11 1.5E-15 98.9 26.8 234 82-355 17-295 (314)
201 1qks_A Cytochrome CD1 nitrite 99.5 3.4E-10 1.2E-14 100.5 33.5 290 32-326 185-547 (567)
202 3hrp_A Uncharacterized protein 99.5 3.6E-11 1.2E-15 102.9 25.7 218 83-344 131-395 (409)
203 3hrp_A Uncharacterized protein 99.5 1E-10 3.5E-15 100.1 27.8 230 45-313 131-408 (409)
204 1xip_A Nucleoporin NUP159; bet 99.5 3.6E-12 1.2E-16 106.7 18.1 171 156-345 39-230 (388)
205 2mad_H Methylamine dehydrogena 99.5 2.4E-10 8.1E-15 96.5 29.2 246 65-347 48-337 (373)
206 3g4e_A Regucalcin; six bladed 99.5 2.3E-10 7.8E-15 93.8 28.1 227 46-304 14-261 (297)
207 1yr2_A Prolyl oligopeptidase; 99.5 1.1E-11 3.7E-16 114.8 21.8 224 81-344 161-422 (741)
208 3q7m_A Lipoprotein YFGL, BAMB; 99.4 6.7E-11 2.3E-15 100.5 24.5 236 50-326 99-346 (376)
209 2qc5_A Streptogramin B lactona 99.4 7.7E-10 2.6E-14 90.7 30.0 225 81-347 18-248 (300)
210 1yr2_A Prolyl oligopeptidase; 99.4 3E-11 1E-15 111.9 22.4 200 153-356 161-392 (741)
211 2ghs_A AGR_C_1268P; regucalcin 99.4 1.8E-09 6.3E-14 89.6 29.8 224 47-304 51-291 (326)
212 3dr2_A Exported gluconolactona 99.4 3.6E-10 1.2E-14 93.0 23.9 213 81-342 43-290 (305)
213 2ghs_A AGR_C_1268P; regucalcin 99.4 7.7E-10 2.6E-14 91.9 26.1 209 86-342 52-285 (326)
214 3hxj_A Pyrrolo-quinoline quino 99.4 7E-11 2.4E-15 98.4 19.6 256 34-341 49-307 (330)
215 3dr2_A Exported gluconolactona 99.4 1.4E-10 5E-15 95.4 21.2 237 36-309 36-301 (305)
216 3sjl_D Methylamine dehydrogena 99.4 2E-10 6.7E-15 95.9 21.0 243 63-341 58-343 (386)
217 2mad_H Methylamine dehydrogena 99.4 7.8E-09 2.7E-13 87.2 30.9 246 32-323 55-356 (373)
218 3sjl_D Methylamine dehydrogena 99.3 3.2E-10 1.1E-14 94.6 21.3 265 31-339 66-384 (386)
219 2qe8_A Uncharacterized protein 99.3 1.2E-09 4.1E-14 91.5 25.0 191 153-344 65-306 (343)
220 2hz6_A Endoplasmic reticulum t 99.3 4.6E-13 1.6E-17 113.2 3.1 204 90-341 7-216 (369)
221 1yiq_A Quinohemoprotein alcoho 99.3 1.1E-09 3.7E-14 100.0 24.8 284 51-342 118-531 (689)
222 1kb0_A Quinohemoprotein alcoho 99.3 3.9E-09 1.4E-13 96.2 26.0 288 51-342 125-533 (677)
223 3q7m_A Lipoprotein YFGL, BAMB; 99.3 8.4E-09 2.9E-13 87.5 26.4 229 50-316 49-297 (376)
224 3c75_H MADH, methylamine dehyd 99.2 4E-09 1.4E-13 89.6 22.5 228 64-324 99-409 (426)
225 3hxj_A Pyrrolo-quinoline quino 99.2 2.3E-10 8E-15 95.2 14.5 239 50-342 25-268 (330)
226 3iuj_A Prolyl endopeptidase; h 99.2 1.4E-09 4.9E-14 99.8 20.3 242 42-319 126-409 (693)
227 3iuj_A Prolyl endopeptidase; h 99.2 2E-09 6.9E-14 98.8 20.8 221 81-344 127-386 (693)
228 1kb0_A Quinohemoprotein alcoho 99.2 1.9E-09 6.5E-14 98.2 19.3 194 53-279 76-351 (677)
229 2hz6_A Endoplasmic reticulum t 99.2 6.5E-12 2.2E-16 106.1 2.7 184 51-279 6-197 (369)
230 1yiq_A Quinohemoprotein alcoho 99.2 5.4E-09 1.9E-13 95.5 21.2 193 53-278 69-342 (689)
231 1fwx_A Nitrous oxide reductase 99.1 7.8E-09 2.7E-13 90.1 18.6 226 86-347 90-406 (595)
232 3c75_H MADH, methylamine dehyd 99.1 1.3E-08 4.5E-13 86.5 19.7 219 92-347 84-389 (426)
233 2qe8_A Uncharacterized protein 99.1 4.8E-08 1.6E-12 81.7 21.4 240 45-311 17-317 (343)
234 1npe_A Nidogen, entactin; glyc 99.1 5.7E-07 2E-11 72.2 26.9 217 83-341 36-263 (267)
235 2ece_A 462AA long hypothetical 99.0 1.8E-07 6.3E-12 78.8 23.9 183 158-347 141-399 (462)
236 1mda_H Methylamine dehydrogena 99.0 2.1E-08 7.2E-13 83.8 17.4 236 65-338 47-366 (368)
237 4a2l_A BT_4663, two-component 99.0 4.4E-06 1.5E-10 78.1 33.2 278 44-350 214-519 (795)
238 2iwa_A Glutamine cyclotransfer 99.0 2.2E-07 7.5E-12 73.4 20.5 187 156-354 22-232 (266)
239 1mda_H Methylamine dehydrogena 99.0 8.3E-09 2.8E-13 86.2 13.1 193 159-358 69-347 (368)
240 4a2l_A BT_4663, two-component 99.0 5E-06 1.7E-10 77.7 33.2 269 45-347 310-604 (795)
241 1kv9_A Type II quinohemoprotei 99.0 2.5E-07 8.7E-12 84.3 23.3 282 52-341 115-513 (668)
242 2ad6_A Methanol dehydrogenase 98.9 7.4E-07 2.5E-11 79.6 25.5 287 52-342 113-520 (571)
243 2ece_A 462AA long hypothetical 98.9 4.2E-07 1.4E-11 76.6 21.6 218 56-303 98-399 (462)
244 1kv9_A Type II quinohemoprotei 98.9 2.2E-07 7.4E-12 84.7 19.8 193 53-278 65-337 (668)
245 3nol_A Glutamine cyclotransfer 98.8 1.1E-06 3.7E-11 68.7 20.0 186 157-354 45-251 (262)
246 3v9f_A Two-component system se 98.8 9.2E-06 3.1E-10 75.8 28.8 270 44-347 312-601 (781)
247 3v9f_A Two-component system se 98.8 8E-06 2.7E-10 76.2 27.2 260 45-346 363-645 (781)
248 1k3i_A Galactose oxidase precu 98.8 8E-07 2.7E-11 81.1 20.1 260 53-347 197-529 (656)
249 2fp8_A Strictosidine synthase; 98.8 1.3E-05 4.4E-10 66.3 25.3 235 47-316 21-314 (322)
250 2fp8_A Strictosidine synthase; 98.8 4.8E-06 1.6E-10 68.8 22.6 236 85-345 21-299 (322)
251 2p4o_A Hypothetical protein; p 98.8 1.6E-05 5.5E-10 65.1 25.5 239 29-305 17-278 (306)
252 3nok_A Glutaminyl cyclase; bet 98.8 3.8E-06 1.3E-10 65.6 20.1 174 156-342 56-248 (268)
253 1w6s_A Methanol dehydrogenase 98.7 5.5E-06 1.9E-10 74.0 23.9 281 57-342 124-529 (599)
254 1npe_A Nidogen, entactin; glyc 98.7 3.1E-05 1.1E-09 62.0 25.4 173 155-337 36-217 (267)
255 1flg_A Protein (quinoprotein e 98.7 1.5E-05 5.2E-10 71.2 25.5 181 159-342 250-542 (582)
256 3mbr_X Glutamine cyclotransfer 98.7 2.6E-05 9E-10 60.3 22.9 188 155-354 21-230 (243)
257 1fwx_A Nitrous oxide reductase 98.7 1.9E-05 6.4E-10 69.2 24.2 149 177-326 255-442 (595)
258 2iwa_A Glutamine cyclotransfer 98.7 2.4E-05 8.1E-10 61.9 22.8 190 85-316 23-238 (266)
259 3nok_A Glutaminyl cyclase; bet 98.7 1.7E-06 5.9E-11 67.5 15.8 191 35-262 44-253 (268)
260 2ad6_A Methanol dehydrogenase 98.7 7.3E-06 2.5E-10 73.2 21.8 197 53-279 61-340 (571)
261 3nol_A Glutamine cyclotransfer 98.6 9.2E-06 3.1E-10 63.5 19.5 193 34-263 31-244 (262)
262 3qqz_A Putative uncharacterize 98.6 2.2E-05 7.6E-10 61.7 21.5 200 152-355 24-249 (255)
263 3v65_B Low-density lipoprotein 98.6 0.00015 5.2E-09 61.4 26.8 246 48-337 80-338 (386)
264 2p4o_A Hypothetical protein; p 98.6 0.00017 5.9E-09 58.9 26.3 223 83-342 32-271 (306)
265 3v64_C Agrin; beta propeller, 98.6 0.00022 7.5E-09 59.5 29.3 229 45-315 34-275 (349)
266 3mbr_X Glutamine cyclotransfer 98.5 3.5E-05 1.2E-09 59.7 18.6 193 34-263 9-223 (243)
267 1w6s_A Methanol dehydrogenase 98.4 3.7E-05 1.3E-09 68.8 19.7 193 53-279 61-347 (599)
268 1flg_A Protein (quinoprotein e 98.4 0.00023 7.8E-09 63.7 23.6 67 53-119 67-144 (582)
269 3p5b_L Low density lipoprotein 98.4 0.00086 2.9E-08 57.0 29.4 243 56-336 85-339 (400)
270 3v64_C Agrin; beta propeller, 98.3 0.00084 2.9E-08 55.9 27.4 192 155-355 73-271 (349)
271 2p9w_A MAL S 1 allergenic prot 98.3 0.0005 1.7E-08 55.7 22.1 210 80-315 10-265 (334)
272 2xe4_A Oligopeptidase B; hydro 98.3 5.6E-05 1.9E-09 70.0 18.5 154 156-315 175-354 (751)
273 1ijq_A LDL receptor, low-densi 98.3 0.001 3.5E-08 54.6 28.0 193 155-354 30-233 (316)
274 3v65_B Low-density lipoprotein 98.3 0.0014 4.8E-08 55.4 26.2 192 155-355 116-314 (386)
275 3tc9_A Hypothetical hydrolase; 98.3 0.00047 1.6E-08 59.3 22.4 112 155-273 179-300 (430)
276 3qqz_A Putative uncharacterize 98.2 0.00099 3.4E-08 52.3 23.7 205 39-272 21-251 (255)
277 2p9w_A MAL S 1 allergenic prot 98.2 0.00063 2.1E-08 55.1 21.0 199 158-357 16-262 (334)
278 2xbg_A YCF48-like protein; pho 98.2 0.0015 5E-08 54.0 25.5 152 153-312 161-319 (327)
279 3p5b_L Low density lipoprotein 98.2 0.0021 7.3E-08 54.6 27.2 182 153-340 110-302 (400)
280 3sov_A LRP-6, low-density lipo 98.2 0.0017 5.8E-08 53.3 24.6 216 63-316 12-239 (318)
281 1k3i_A Galactose oxidase precu 98.1 0.00014 4.9E-09 66.3 17.0 182 157-346 245-473 (656)
282 2xbg_A YCF48-like protein; pho 98.1 0.0029 9.8E-08 52.2 31.6 260 44-345 35-309 (327)
283 2vpj_A Kelch-like protein 12; 98.1 0.0018 6.1E-08 52.7 21.8 152 165-324 112-287 (301)
284 1ijq_A LDL receptor, low-densi 98.1 0.0029 9.8E-08 51.9 29.3 215 64-316 10-239 (316)
285 4hw6_A Hypothetical protein, I 98.0 0.0046 1.6E-07 53.1 24.6 193 46-273 140-373 (433)
286 3ii7_A Kelch-like protein 7; p 98.0 0.0023 8E-08 52.1 21.6 156 165-328 101-285 (306)
287 3tc9_A Hypothetical hydrolase; 98.0 0.005 1.7E-07 52.9 25.7 148 47-226 139-301 (430)
288 2xe4_A Oligopeptidase B; hydro 98.0 0.0026 8.8E-08 59.0 23.6 189 46-272 175-398 (751)
289 4hw6_A Hypothetical protein, I 98.0 0.001 3.4E-08 57.2 18.7 153 156-315 140-304 (433)
290 3m0c_C LDL receptor, low-densi 97.9 0.012 4.2E-07 54.5 29.4 218 64-316 404-633 (791)
291 3amr_A 3-phytase; beta-propell 97.9 0.0057 1.9E-07 50.1 21.7 146 175-324 98-271 (355)
292 3m0c_C LDL receptor, low-densi 97.9 0.014 4.9E-07 54.0 26.9 180 153-339 422-613 (791)
293 3ott_A Two-component system se 97.9 0.016 5.4E-07 53.9 32.6 257 44-342 21-292 (758)
294 3amr_A 3-phytase; beta-propell 97.9 0.0037 1.3E-07 51.2 19.4 169 165-341 39-243 (355)
295 2ism_A Putative oxidoreductase 97.9 0.0076 2.6E-07 50.2 26.6 229 84-343 32-329 (352)
296 1zgk_A Kelch-like ECH-associat 97.9 0.0042 1.4E-07 50.7 20.0 152 165-323 121-295 (308)
297 1n7d_A LDL receptor, low-densi 97.9 0.00026 8.7E-09 64.9 13.7 234 63-337 385-634 (699)
298 2xn4_A Kelch-like protein 2; s 97.8 0.0057 2E-07 49.7 19.9 150 165-321 108-282 (302)
299 1n7d_A LDL receptor, low-densi 97.7 0.00039 1.3E-08 63.7 12.0 180 155-340 406-596 (699)
300 3sov_A LRP-6, low-density lipo 97.6 0.023 7.8E-07 46.5 24.5 194 46-278 36-242 (318)
301 2vpj_A Kelch-like protein 12; 97.6 0.014 4.8E-07 47.3 18.7 152 165-324 62-240 (301)
302 3kya_A Putative phosphatase; s 97.5 0.035 1.2E-06 48.1 25.9 197 155-357 186-473 (496)
303 4a0p_A LRP6, LRP-6, low-densit 97.5 0.052 1.8E-06 49.0 27.6 176 155-339 37-218 (628)
304 3pbp_A Nucleoporin NUP82; beta 97.4 0.02 7E-07 48.0 17.8 113 156-270 67-208 (452)
305 3ii7_A Kelch-like protein 7; p 97.4 0.025 8.6E-07 45.9 18.7 152 165-324 55-234 (306)
306 3kya_A Putative phosphatase; s 97.4 0.036 1.2E-06 48.1 20.0 159 156-315 140-341 (496)
307 1zgk_A Kelch-like ECH-associat 97.4 0.015 5.2E-07 47.3 17.2 152 165-324 70-249 (308)
308 2xn4_A Kelch-like protein 2; s 97.4 0.023 7.8E-07 46.1 18.1 153 165-324 61-238 (302)
309 3ei3_A DNA damage-binding prot 97.4 0.11 3.7E-06 50.5 33.2 271 44-355 553-911 (1158)
310 1tl2_A L10, protein (tachylect 97.4 0.0061 2.1E-07 46.1 12.9 146 155-307 41-202 (236)
311 2ism_A Putative oxidoreductase 97.4 0.048 1.6E-06 45.3 21.6 104 155-261 31-152 (352)
312 3ei3_A DNA damage-binding prot 97.3 0.14 4.7E-06 49.8 31.6 225 82-344 513-752 (1158)
313 3s94_A LRP-6, low-density lipo 97.3 0.089 3E-06 47.4 24.0 214 63-316 17-244 (619)
314 3sre_A PON1, serum paraoxonase 97.3 0.056 1.9E-06 44.7 20.7 182 156-343 51-281 (355)
315 2uvk_A YJHT; unknown function, 97.3 0.033 1.1E-06 46.4 18.0 147 176-324 168-351 (357)
316 3ott_A Two-component system se 97.2 0.13 4.4E-06 47.8 30.6 181 156-342 192-386 (758)
317 4a0p_A LRP6, LRP-6, low-densit 97.1 0.15 5.2E-06 46.0 29.5 214 62-316 13-238 (628)
318 3s94_A LRP-6, low-density lipo 97.0 0.2 6.7E-06 45.2 24.4 176 155-339 40-224 (619)
319 4asc_A Kelch repeat and BTB do 96.9 0.12 4.2E-06 42.0 20.4 150 165-321 98-283 (315)
320 2g8s_A Glucose/sorbosone dehyd 96.9 0.14 4.7E-06 42.6 28.2 61 295-355 288-350 (353)
321 2xzh_A Clathrin heavy chain 1; 96.8 0.14 4.7E-06 41.5 25.1 193 101-337 86-310 (365)
322 1tl2_A L10, protein (tachylect 96.7 0.13 4.4E-06 39.1 15.9 174 167-346 5-199 (236)
323 3pbp_A Nucleoporin NUP82; beta 96.7 0.24 8.2E-06 41.7 18.6 149 162-311 28-208 (452)
324 2xzh_A Clathrin heavy chain 1; 96.6 0.2 6.8E-06 40.6 26.8 229 56-315 80-332 (365)
325 2woz_A Kelch repeat and BTB do 96.6 0.21 7.1E-06 40.7 19.4 150 165-321 109-293 (318)
326 4asc_A Kelch repeat and BTB do 96.6 0.22 7.4E-06 40.6 20.3 154 164-324 44-230 (315)
327 2woz_A Kelch repeat and BTB do 96.5 0.25 8.7E-06 40.2 17.4 155 163-324 54-240 (318)
328 3a9g_A Putative uncharacterize 96.5 0.29 9.8E-06 40.7 19.4 107 154-262 28-153 (354)
329 3sre_A PON1, serum paraoxonase 96.5 0.29 9.8E-06 40.5 19.3 110 155-271 165-295 (355)
330 2uvk_A YJHT; unknown function, 96.5 0.31 1.1E-05 40.4 18.3 104 217-325 168-304 (357)
331 1bpo_A Protein (clathrin); cla 96.4 0.37 1.2E-05 40.8 26.3 195 101-339 85-311 (494)
332 3a9g_A Putative uncharacterize 96.3 0.38 1.3E-05 40.0 29.3 233 84-346 30-329 (354)
333 3qhy_B Beta-lactamase inhibito 96.2 0.37 1.3E-05 38.5 24.8 240 46-341 25-266 (282)
334 1xi4_A Clathrin heavy chain; a 96.2 0.64 2.2E-05 45.7 18.9 175 100-316 84-290 (1630)
335 3das_A Putative oxidoreductase 96.1 0.48 1.6E-05 39.0 16.2 152 192-346 27-219 (347)
336 1bpo_A Protein (clathrin); cla 96.0 0.58 2E-05 39.6 26.0 223 63-315 85-331 (494)
337 2zwa_A Leucine carboxyl methyl 96.0 0.7 2.4E-05 42.4 18.4 151 165-319 451-639 (695)
338 2be1_A Serine/threonine-protei 96.0 0.055 1.9E-06 44.4 9.9 148 55-223 11-181 (339)
339 1cru_A Protein (soluble quinop 95.8 0.8 2.7E-05 39.5 18.7 109 154-262 26-162 (454)
340 2be1_A Serine/threonine-protei 95.7 0.024 8.1E-07 46.5 6.7 109 92-229 10-133 (339)
341 2g8s_A Glucose/sorbosone dehyd 95.6 0.38 1.3E-05 39.9 13.8 145 198-345 19-214 (353)
342 3das_A Putative oxidoreductase 95.6 0.8 2.8E-05 37.7 18.5 110 153-262 30-158 (347)
343 1cru_A Protein (soluble quinop 95.3 1.2 4E-05 38.4 16.3 103 197-303 27-162 (454)
344 3qhy_B Beta-lactamase inhibito 95.1 0.98 3.4E-05 36.0 24.2 183 83-314 24-206 (282)
345 1xi4_A Clathrin heavy chain; a 95.0 3.1 0.00011 41.2 19.7 186 63-278 85-293 (1630)
346 3s25_A Hypothetical 7-bladed b 94.9 1.2 4.1E-05 35.9 17.6 159 161-345 59-239 (302)
347 2zwa_A Leucine carboxyl methyl 94.8 2.3 7.9E-05 39.0 17.5 147 164-317 396-579 (695)
348 3kci_A Probable E3 ubiquitin-p 94.8 1.6 5.5E-05 36.7 28.5 241 52-313 8-291 (389)
349 3sbq_A Nitrous-oxide reductase 94.4 2.4 8.3E-05 37.2 16.2 137 200-336 326-499 (638)
350 3s25_A Hypothetical 7-bladed b 92.6 3.4 0.00012 33.3 21.4 138 161-317 110-257 (302)
351 3kci_A Probable E3 ubiquitin-p 91.8 5.2 0.00018 33.6 27.1 244 46-314 54-344 (389)
352 4d9s_A UVB-resistance protein 91.1 6.3 0.00022 33.3 30.0 244 45-313 68-355 (406)
353 4d9s_A UVB-resistance protein 90.4 7.4 0.00025 32.9 35.1 245 44-313 15-303 (406)
354 3mvd_K Regulator of chromosome 89.7 8.7 0.0003 32.6 29.6 243 46-314 76-373 (423)
355 4gq2_M Nucleoporin NUP120; bet 89.1 15 0.00052 35.1 15.5 40 154-193 235-274 (950)
356 2wg3_C Hedgehog-interacting pr 82.6 23 0.00078 30.5 13.3 109 197-305 14-159 (463)
357 3sbq_A Nitrous-oxide reductase 82.2 11 0.00038 33.3 9.7 102 244-345 323-451 (638)
358 2wg3_C Hedgehog-interacting pr 81.5 25 0.00086 30.3 14.0 109 155-263 14-158 (463)
359 3f7f_A Nucleoporin NUP120; nuc 79.0 15 0.00053 33.4 10.0 38 155-194 222-259 (729)
360 3mvd_K Regulator of chromosome 77.7 31 0.0011 29.1 34.1 241 49-313 28-320 (423)
361 4fhn_B Nucleoporin NUP120; pro 77.2 10 0.00035 37.1 9.1 39 155-193 238-276 (1139)
362 3uc1_A DNA gyrase subunit A; D 76.8 29 0.00098 28.3 17.9 165 82-273 94-278 (327)
363 3b7f_A Glycosyl hydrolase, BNR 68.1 51 0.0018 27.4 23.8 66 155-222 177-258 (394)
364 3no0_A DNA gyrase subunit A; D 67.9 43 0.0015 26.4 18.8 158 154-314 67-245 (276)
365 3no0_A DNA gyrase subunit A; D 66.9 45 0.0015 26.3 24.0 211 34-273 10-245 (276)
366 4gq2_M Nucleoporin NUP120; bet 66.5 39 0.0014 32.3 10.2 35 244-278 236-270 (950)
367 3q6k_A 43.2 kDa salivary prote 64.8 61 0.0021 27.0 21.1 161 177-342 124-337 (381)
368 3q6k_A 43.2 kDa salivary prote 63.4 65 0.0022 26.9 18.8 117 155-274 152-306 (381)
369 1suu_A DNA gyrase subunit A; t 59.6 67 0.0023 25.8 24.2 196 92-314 8-230 (312)
370 3f7f_A Nucleoporin NUP120; nuc 54.3 30 0.001 31.6 6.6 30 287-316 222-251 (729)
371 1a12_A RCC1, regulator of chro 51.3 1.1E+02 0.0037 25.7 28.4 241 45-311 59-361 (413)
372 1wp5_A Topoisomerase IV; broke 50.5 99 0.0034 25.0 27.4 237 55-314 6-276 (323)
373 3of7_A Regulator of chromosome 49.4 1.3E+02 0.0043 25.9 29.1 247 44-314 66-404 (473)
374 4a9v_A PHOX; hydrolase, beta-p 46.3 1.5E+02 0.0051 26.4 9.4 59 155-213 476-548 (592)
375 1suu_A DNA gyrase subunit A; t 45.1 1.2E+02 0.0041 24.4 27.6 198 53-273 7-230 (312)
376 3uc1_A DNA gyrase subunit A; D 43.8 1.3E+02 0.0044 24.4 27.0 159 155-314 95-278 (327)
377 3zwu_A Alkaline phosphatase PH 43.5 1.2E+02 0.0042 27.1 8.7 56 157-212 478-547 (592)
378 1zi0_A DNA gyrase subunit A; b 42.4 1.3E+02 0.0045 24.1 24.0 237 92-364 3-270 (307)
379 4a9v_A PHOX; hydrolase, beta-p 35.9 1.9E+02 0.0066 25.7 8.6 59 198-262 477-549 (592)
380 3al9_A Plexin-A2; beta-propell 35.9 57 0.002 28.8 5.4 71 199-269 402-476 (539)
381 3nvq_A Semaphorin-7A; beta-pro 35.1 1E+02 0.0035 27.5 6.9 46 297-342 381-432 (590)
382 1q47_A Semaphorin 3A; beta pro 34.7 1.2E+02 0.0042 26.3 7.2 61 209-269 423-487 (495)
383 4hvt_A Ritya.17583.B, post-pro 32.8 2.9E+02 0.01 25.4 18.4 183 158-344 132-365 (711)
384 1zvt_A Topoisomerase IV subuni 32.1 1.8E+02 0.006 22.6 15.0 116 156-273 34-162 (256)
385 3l6v_A GYRA, DNA gyrase subuni 32.1 2.2E+02 0.0074 23.6 25.8 118 154-273 45-179 (370)
386 1q47_A Semaphorin 3A; beta pro 30.7 99 0.0034 26.9 6.0 45 297-341 422-474 (495)
387 1olz_A Semaphorin 4D; developm 29.2 1.6E+02 0.0055 26.8 7.3 42 298-340 417-461 (663)
388 3b7f_A Glycosyl hydrolase, BNR 27.2 2.6E+02 0.0089 23.0 20.1 103 166-271 22-144 (394)
389 4gz8_A Semaphorin-3A; multi-do 26.6 3.1E+02 0.011 25.0 8.6 61 209-269 431-495 (667)
390 3al9_A Plexin-A2; beta-propell 24.9 91 0.0031 27.5 4.8 47 296-342 413-464 (539)
391 3ol2_B Plexin-B1; beta-propell 24.1 2.5E+02 0.0085 24.7 7.3 59 209-269 402-461 (528)
392 1wp5_A Topoisomerase IV; broke 24.1 2.8E+02 0.0097 22.3 23.6 158 155-314 39-224 (323)
393 4fhn_B Nucleoporin NUP120; pro 24.1 5.2E+02 0.018 25.4 16.7 34 245-278 239-272 (1139)
394 1zvu_A Topoisomerase IV subuni 21.1 4.9E+02 0.017 23.9 10.8 148 164-314 470-632 (716)
395 4gz8_A Semaphorin-3A; multi-do 20.8 2E+02 0.0068 26.2 6.2 46 297-342 430-483 (667)
396 3zwu_A Alkaline phosphatase PH 20.2 2.8E+02 0.0097 24.8 7.0 53 290-344 481-546 (592)
No 1
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=100.00 E-value=6e-50 Score=333.92 Aligned_cols=281 Identities=20% Similarity=0.267 Sum_probs=247.3
Q ss_pred CceeeeccCcCCcEEEEEecC------CEEEEccCCCcEEEEcCCcc----eecccCCCCCeeEEEEe--CCEEEEEeCC
Q 047325 34 NGLIGSLVREEGHIYSLAASK------DLLYTGSDSKNIRVWKNLKE----FCGFKASSGLVKAIVIS--GEKIFTGHQD 101 (368)
Q Consensus 34 ~~~~~~~~~h~~~i~~~~~~~------~~l~s~~~dg~i~iw~~~~~----~~~~~~~~~~v~~~~~~--~~~l~s~~~d 101 (368)
+.+.+.+.+|.+.|++++|++ ++|+||+.|++|++||.... ...+.+|...|.+++++ +.++++++.|
T Consensus 22 g~~~~~~~~H~~~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~~~~~~~l~gh~~~v~~~~~~~~~~~l~s~s~D 101 (321)
T 3ow8_A 22 GILFKQEQAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERLDLQWSLEGHQLGVVSVDISHTLPIAASSSLD 101 (321)
T ss_dssp EEEEEETTSSSSCEEEEEEC-------CEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECSSSSEEEEEETT
T ss_pred hheeeecccCCCcEEEEEEecCCCCCCCEEEEEcCCCCEEEEECCCCCeeeeeeeccCCCCEEEEEECCCCCEEEEEeCC
Confidence 445677889999999999964 38999999999999997643 33578999999999998 6799999999
Q ss_pred CeEEEEeecCCCccccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcCCCCEEEEEeCCCcEEEE
Q 047325 102 GKIRVWKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCGLLYTASWDRTFKVW 181 (368)
Q Consensus 102 g~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iw 181 (368)
++|++||+.+++.... +..|...+.+++|+|++++|++++.|+.|++|
T Consensus 102 ~~i~lWd~~~~~~~~~--------------------------------~~~~~~~~~~~~~spdg~~l~~g~~dg~v~i~ 149 (321)
T 3ow8_A 102 AHIRLWDLENGKQIKS--------------------------------IDAGPVDAWTLAFSPDSQYLATGTHVGKVNIF 149 (321)
T ss_dssp SEEEEEETTTTEEEEE--------------------------------EECCTTCCCCEEECTTSSEEEEECTTSEEEEE
T ss_pred CcEEEEECCCCCEEEE--------------------------------EeCCCccEEEEEECCCCCEEEEEcCCCcEEEE
Confidence 9999999987753222 23377788999999999999999999999999
Q ss_pred EccCCeEEEEeecCCCceEEEEeCCCC-eEEEEcCCCeEEEEEcCCCCCCcccccceeeccccccEEEEEEcCCCCEEEE
Q 047325 182 RISDSKCLESVSAHDDAVNSVVSSSEG-LIFTGSADGTVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSSSRSIVYC 260 (368)
Q Consensus 182 d~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~ 260 (368)
|+++++....+..+...|.+++|+|++ +|++|+.|+.|++||++.. .....+.+|..+|.+++|+|++++|++
T Consensus 150 ~~~~~~~~~~~~~~~~~v~~~~~spdg~~lasg~~dg~i~iwd~~~~------~~~~~~~~h~~~v~~l~~spd~~~l~s 223 (321)
T 3ow8_A 150 GVESGKKEYSLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATG------KLLHTLEGHAMPIRSLTFSPDSQLLVT 223 (321)
T ss_dssp ETTTCSEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTT------EEEEEECCCSSCCCEEEECTTSCEEEE
T ss_pred EcCCCceeEEecCCCceEEEEEECCCCCEEEEEcCCCeEEEEECCCC------cEEEEEcccCCceeEEEEcCCCCEEEE
Confidence 999999999999999999999999999 9999999999999999865 356677889999999999999999999
Q ss_pred ecCCCcEEEEeCCCccccceeeeccceEEEE--EEeCCCEEEEeeCCCeEEEEecCCCceeeeEeeeccccCeeEEEEec
Q 047325 261 GSSDGLVNFWEREKQLSHGGVLKGHKLAVLC--LAAAGKLVFSGSADKTICVWRRDGAIHTCLSVLTGHTGPVKCLAVEE 338 (368)
Q Consensus 261 ~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~l~~~~ 338 (368)
|+.|+.|++||+++.... ..+.+|...+.+ ++|++++|++|+.|++|++||+.+. .++..+.+|...|++++|+|
T Consensus 224 ~s~dg~i~iwd~~~~~~~-~~~~~h~~~v~~~~~sp~~~~l~s~s~D~~v~iwd~~~~--~~~~~~~~h~~~v~~v~~s~ 300 (321)
T 3ow8_A 224 ASDDGYIKIYDVQHANLA-GTLSGHASWVLNVAFCPDDTHFVSSSSDKSVKVWDVGTR--TCVHTFFDHQDQVWGVKYNG 300 (321)
T ss_dssp ECTTSCEEEEETTTCCEE-EEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTT--EEEEEECCCSSCEEEEEECT
T ss_pred EcCCCeEEEEECCCccee-EEEcCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCC--EEEEEEcCCCCcEEEEEECC
Confidence 999999999999876554 567788877755 5568999999999999999999876 77888999999999999999
Q ss_pred CCeeeecCCcceEEEEEeeCCcccccccC
Q 047325 339 DRDSSSSTSSCAQRWIVYSGSLDKSDDDV 367 (368)
Q Consensus 339 ~~~~~~~~~~~~~~w~l~sg~~D~~v~i~ 367 (368)
++. .|++++.|++|++|
T Consensus 301 ~g~------------~l~s~~~d~~i~vw 317 (321)
T 3ow8_A 301 NGS------------KIVSVGDDQEIHIY 317 (321)
T ss_dssp TSS------------EEEEEETTCCEEEE
T ss_pred CCC------------EEEEEeCCCeEEEE
Confidence 999 78899999999998
No 2
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=100.00 E-value=7.8e-50 Score=344.72 Aligned_cols=283 Identities=22% Similarity=0.352 Sum_probs=249.8
Q ss_pred CCceeeeccCcCCcEEEEEecCC--EEEEccCCCcEEEEcCCc--ceecccCCCCCeeEEEEe--CCEEEEEeCCCeEEE
Q 047325 33 QNGLIGSLVREEGHIYSLAASKD--LLYTGSDSKNIRVWKNLK--EFCGFKASSGLVKAIVIS--GEKIFTGHQDGKIRV 106 (368)
Q Consensus 33 ~~~~~~~~~~h~~~i~~~~~~~~--~l~s~~~dg~i~iw~~~~--~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~v 106 (368)
.......+.+|.++|++++|+++ +|++|+.||+|++||+.+ ....+.+|...|.+++|+ +++|++|+.||+|++
T Consensus 97 ~~~~~~~l~gh~~~V~~~~~~p~~~~l~s~s~Dg~i~vwd~~~~~~~~~l~~h~~~V~~v~~~~~~~~l~sgs~D~~i~i 176 (410)
T 1vyh_C 97 RPPEKYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKL 176 (410)
T ss_dssp CSSCSCEEECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCEEECCCSSCEEEEEECTTSSEEEEEETTSCCCE
T ss_pred CCCceEeecccCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEEeccCCcEEEEEEcCCCCEEEEEeCCCeEEE
Confidence 33445678899999999999865 999999999999999874 456788999999999998 789999999999999
Q ss_pred EeecCCCccccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcCCCCEEEEEeCCCcEEEEEccCC
Q 047325 107 WKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCGLLYTASWDRTFKVWRISDS 186 (368)
Q Consensus 107 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~ 186 (368)
||+.+.+.... +.+|...|.+++|+|++++|++|+.|+.|++||++++
T Consensus 177 wd~~~~~~~~~--------------------------------~~~h~~~V~~v~~~p~~~~l~s~s~D~~i~~wd~~~~ 224 (410)
T 1vyh_C 177 WDFQGFECIRT--------------------------------MHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTG 224 (410)
T ss_dssp EETTSSCEEEC--------------------------------CCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTC
T ss_pred EeCCCCceeEE--------------------------------EcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCC
Confidence 99987653222 2349999999999999999999999999999999999
Q ss_pred eEEEEeecCCCceEEEEeCCCC-eEEEEcCCCeEEEEEcCCCCCCcccccceeeccccccEEEEEEcCC-----------
Q 047325 187 KCLESVSAHDDAVNSVVSSSEG-LIFTGSADGTVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSSS----------- 254 (368)
Q Consensus 187 ~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~----------- 254 (368)
+++..+.+|...|.++.+++++ .+++|+.|+.|++||++.. .....+..|...|.+++|+|+
T Consensus 225 ~~~~~~~~h~~~v~~~~~~~~g~~l~s~s~D~~v~vwd~~~~------~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~ 298 (410)
T 1vyh_C 225 YCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATK------ECKAELREHRHVVECISWAPESSYSSISEATG 298 (410)
T ss_dssp CEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTC------CEEEEECCCSSCEEEEEECCSCGGGGGGGCCS
T ss_pred cEEEEEeCCCccEEEEEECCCCCEEEEEcCCCeEEEEECCCC------ceeeEecCCCceEEEEEEcCcccccchhhhcc
Confidence 9999999999999999999999 9999999999999999865 245667789999999999996
Q ss_pred ---------CCEEEEecCCCcEEEEeCCCccccceeeeccceEEEE--EEeCCCEEEEeeCCCeEEEEecCCCceeeeEe
Q 047325 255 ---------RSIVYCGSSDGLVNFWEREKQLSHGGVLKGHKLAVLC--LAAAGKLVFSGSADKTICVWRRDGAIHTCLSV 323 (368)
Q Consensus 255 ---------~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~ 323 (368)
+.+|++|+.|+.|++||++++... ..+.+|...+.+ ++|++++|++|+.||.|++||+.+. +++..
T Consensus 299 ~~~~~~~~~g~~l~sgs~D~~i~iwd~~~~~~~-~~~~~h~~~v~~v~~~~~g~~l~s~s~D~~i~vwd~~~~--~~~~~ 375 (410)
T 1vyh_C 299 SETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCL-MTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNK--RCMKT 375 (410)
T ss_dssp CC-------CCEEEEEETTSEEEEEETTTTEEE-EEEECCSSCEEEEEECSSSSCEEEEETTTEEEEECCTTS--CCCEE
T ss_pred ccccccCCCCCEEEEEeCCCeEEEEECCCCceE-EEEECCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCC--ceEEE
Confidence 678999999999999999987655 566778877754 5568999999999999999998766 67888
Q ss_pred eeccccCeeEEEEecCCeeeecCCcceEEEEEeeCCcccccccCC
Q 047325 324 LTGHTGPVKCLAVEEDRDSSSSTSSCAQRWIVYSGSLDKSDDDVH 368 (368)
Q Consensus 324 ~~~h~~~v~~l~~~~~~~~~~~~~~~~~~w~l~sg~~D~~v~i~h 368 (368)
+.+|...|++++|+|++. .|++|+.|++||+|.
T Consensus 376 ~~~h~~~v~~l~~~~~~~------------~l~sgs~D~~i~vW~ 408 (410)
T 1vyh_C 376 LNAHEHFVTSLDFHKTAP------------YVVTGSVDQTVKVWE 408 (410)
T ss_dssp EECCSSCEEEEEECSSSS------------CEEEEETTSEEEEEC
T ss_pred EcCCCCcEEEEEEcCCCC------------EEEEEeCCCcEEEEe
Confidence 899999999999999999 789999999999994
No 3
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=100.00 E-value=2e-48 Score=327.98 Aligned_cols=286 Identities=21% Similarity=0.325 Sum_probs=245.4
Q ss_pred CceeeeccCcCCcEEEEEecCC--EEEEccCCCcEEEEcCCc--ceecccCCCCCeeEEEEe--CCEEEEEeCCCeEEEE
Q 047325 34 NGLIGSLVREEGHIYSLAASKD--LLYTGSDSKNIRVWKNLK--EFCGFKASSGLVKAIVIS--GEKIFTGHQDGKIRVW 107 (368)
Q Consensus 34 ~~~~~~~~~h~~~i~~~~~~~~--~l~s~~~dg~i~iw~~~~--~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~vw 107 (368)
.....++.+|.+.|++++|+++ +|++|+.||+|++||..+ ....+..|...|.+++|+ +++|++|+.|+.|++|
T Consensus 45 ~~~~~~l~gH~~~v~~~~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iw 124 (340)
T 1got_B 45 MRTRRTLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIY 124 (340)
T ss_dssp CCEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECSSSCEEEEEECTTSSEEEEEETTCEEEEE
T ss_pred chhheeecCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCCcceEeecCCccEEEEEECCCCCEEEEEeCCCeEEEE
Confidence 4556789999999999999865 999999999999999764 456678899999999998 7899999999999999
Q ss_pred eecCCCccccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcCCCCEEEEEeCCCcEEEEEccCCe
Q 047325 108 KISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCGLLYTASWDRTFKVWRISDSK 187 (368)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~ 187 (368)
++.+.+.... ....+.+|...|.++.|++++ .+++++.|+.|++||+.+++
T Consensus 125 ~~~~~~~~~~----------------------------~~~~~~~h~~~v~~~~~~~~~-~l~s~s~d~~i~~wd~~~~~ 175 (340)
T 1got_B 125 NLKTREGNVR----------------------------VSRELAGHTGYLSCCRFLDDN-QIVTSSGDTTCALWDIETGQ 175 (340)
T ss_dssp ETTTCSBSCE----------------------------EEEEEECCSSCEEEEEEEETT-EEEEEETTSCEEEEETTTTE
T ss_pred ECccCCCcce----------------------------eEEEecCCCccEEEEEECCCC-cEEEEECCCcEEEEECCCCc
Confidence 9976542110 122345699999999999876 48899999999999999999
Q ss_pred EEEEeecCCCceEEEEeCCCC-eEEEEcCCCeEEEEEcCCCCCCcccccceeeccccccEEEEEEcCCCCEEEEecCCCc
Q 047325 188 CLESVSAHDDAVNSVVSSSEG-LIFTGSADGTVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSSSRSIVYCGSSDGL 266 (368)
Q Consensus 188 ~~~~~~~~~~~v~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~ 266 (368)
.+..+.+|...|.+++|+|++ ++++|+.|+.|++||++.. .....+.+|...|.+++|+|++++|++|+.||.
T Consensus 176 ~~~~~~~h~~~v~~~~~~~~~~~l~sg~~d~~v~~wd~~~~------~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~d~~ 249 (340)
T 1got_B 176 QTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREG------MCRQTFTGHESDINAICFFPNGNAFATGSDDAT 249 (340)
T ss_dssp EEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTC------SEEEEECCCSSCEEEEEECTTSSEEEEEETTSC
T ss_pred EEEEEcCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCC------eeEEEEcCCcCCEEEEEEcCCCCEEEEEcCCCc
Confidence 999999999999999999999 9999999999999999865 346677889999999999999999999999999
Q ss_pred EEEEeCCCccccceeee-cc--ceEEEEEEeCCCEEEEeeCCCeEEEEecCCCceeeeEeeeccccCeeEEEEecCCeee
Q 047325 267 VNFWEREKQLSHGGVLK-GH--KLAVLCLAAAGKLVFSGSADKTICVWRRDGAIHTCLSVLTGHTGPVKCLAVEEDRDSS 343 (368)
Q Consensus 267 i~i~d~~~~~~~~~~~~-~~--~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~ 343 (368)
|++||+++......... .+ ....++++|++++|++|+.||.|++||+... ..+..+.+|..+|++++|+|++.
T Consensus 250 v~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~d~~i~vwd~~~~--~~~~~~~~h~~~v~~~~~s~dg~-- 325 (340)
T 1got_B 250 CRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKA--DRAGVLAGHDNRVSCLGVTDDGM-- 325 (340)
T ss_dssp EEEEETTTTEEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEETTTC--CEEEEEECCSSCEEEEEECTTSS--
T ss_pred EEEEECCCCcEEEEEccCCcccceEEEEECCCCCEEEEECCCCeEEEEEcccC--cEeeEeecCCCcEEEEEEcCCCC--
Confidence 99999987655422211 12 2334667789999999999999999998776 66778899999999999999999
Q ss_pred ecCCcceEEEEEeeCCcccccccCC
Q 047325 344 SSTSSCAQRWIVYSGSLDKSDDDVH 368 (368)
Q Consensus 344 ~~~~~~~~~w~l~sg~~D~~v~i~h 368 (368)
.|+||+.|++|++|.
T Consensus 326 ----------~l~s~s~D~~i~iWd 340 (340)
T 1got_B 326 ----------AVATGSWDSFLKIWN 340 (340)
T ss_dssp ----------CEEEEETTSCEEEEC
T ss_pred ----------EEEEEcCCccEEecC
Confidence 789999999999994
No 4
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=100.00 E-value=1.5e-47 Score=324.08 Aligned_cols=286 Identities=21% Similarity=0.287 Sum_probs=244.9
Q ss_pred ceeeeccCcCCcEEEEEecCC--EEEEccCCCcEEEEcCCc--ceecccCCCCCeeEEEEe--CCEEEEEeCCCeEEEEe
Q 047325 35 GLIGSLVREEGHIYSLAASKD--LLYTGSDSKNIRVWKNLK--EFCGFKASSGLVKAIVIS--GEKIFTGHQDGKIRVWK 108 (368)
Q Consensus 35 ~~~~~~~~h~~~i~~~~~~~~--~l~s~~~dg~i~iw~~~~--~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~vw~ 108 (368)
....++.+|.+.|++++|+++ +|+||+.||+|++||... ....+..|...|.+++|+ +.+|++|+.|+.+++|+
T Consensus 55 ~~~~~l~gH~~~V~~~~~s~d~~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~~~~v~~~~~sp~g~~lasg~~d~~i~v~~ 134 (354)
T 2pbi_B 55 KTRRTLKGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEHAVTMPCTWVMACAYAPSGCAIACGGLDNKCSVYP 134 (354)
T ss_dssp CEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCEEEECTTSSEEEEESTTSEEEEEE
T ss_pred EEEEEecCCCCeEEEEEECCCCCEEEEEeCCCeEEEEECCCCCcceEEecCCCCEEEEEECCCCCEEEEeeCCCCEEEEE
Confidence 456789999999999999865 999999999999999764 345677888999999998 88999999999999999
Q ss_pred ecCCCccccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcCCCCEEEEEeCCCcEEEEEccCCeE
Q 047325 109 ISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCGLLYTASWDRTFKVWRISDSKC 188 (368)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~ 188 (368)
+......... .....+.+|...|.++.|+|++..|++++.|++|++||++++++
T Consensus 135 ~~~~~~~~~~--------------------------~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~D~~v~lwd~~~~~~ 188 (354)
T 2pbi_B 135 LTFDKNENMA--------------------------AKKKSVAMHTNYLSACSFTNSDMQILTASGDGTCALWDVESGQL 188 (354)
T ss_dssp CCCCTTCCSG--------------------------GGCEEEEECSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCE
T ss_pred Eecccccccc--------------------------ccceeeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEeCCCCeE
Confidence 8754321110 11233456999999999999999999999999999999999999
Q ss_pred EEEeecCCCceEEEEeCCC--C-eEEEEcCCCeEEEEEcCCCCCCcccccceeeccccccEEEEEEcCCCCEEEEecCCC
Q 047325 189 LESVSAHDDAVNSVVSSSE--G-LIFTGSADGTVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSSSRSIVYCGSSDG 265 (368)
Q Consensus 189 ~~~~~~~~~~v~~~~~~~~--~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg 265 (368)
+..+.+|...|.+++++|+ + .|++|+.||.|++||++.. .+...+..|...|.+++|+|++++|++++.|+
T Consensus 189 ~~~~~~h~~~v~~~~~~~~~~g~~l~sgs~Dg~v~~wd~~~~------~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~ 262 (354)
T 2pbi_B 189 LQSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSG------QCVQAFETHESDVNSVRYYPSGDAFASGSDDA 262 (354)
T ss_dssp EEEEECCSSCEEEEEECCCSSCCEEEEEETTSCEEEEETTTC------CEEEEECCCSSCEEEEEECTTSSEEEEEETTS
T ss_pred EEEEcCCCCCeEEEEEEeCCCCCEEEEEeCCCeEEEEECCCC------cEEEEecCCCCCeEEEEEeCCCCEEEEEeCCC
Confidence 9999999999999999874 4 9999999999999999875 34667788999999999999999999999999
Q ss_pred cEEEEeCCCccccceeeecc----ceEEEEEEeCCCEEEEeeCCCeEEEEecCCCceeeeEeeeccccCeeEEEEecCCe
Q 047325 266 LVNFWEREKQLSHGGVLKGH----KLAVLCLAAAGKLVFSGSADKTICVWRRDGAIHTCLSVLTGHTGPVKCLAVEEDRD 341 (368)
Q Consensus 266 ~i~i~d~~~~~~~~~~~~~~----~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~ 341 (368)
.|++||++...... .+..+ .....+++|++++|++|+.|+.|++||+..+ ..+..+.+|..+|++++|+|++.
T Consensus 263 ~v~lwd~~~~~~~~-~~~~~~~~~~~~~~~~s~~g~~l~~g~~d~~i~vwd~~~~--~~~~~l~~h~~~v~~l~~spdg~ 339 (354)
T 2pbi_B 263 TCRLYDLRADREVA-IYSKESIIFGASSVDFSLSGRLLFAGYNDYTINVWDVLKG--SRVSILFGHENRVSTLRVSPDGT 339 (354)
T ss_dssp CEEEEETTTTEEEE-EECCTTCCSCEEEEEECTTSSEEEEEETTSCEEEEETTTC--SEEEEECCCSSCEEEEEECTTSS
T ss_pred eEEEEECCCCcEEE-EEcCCCcccceeEEEEeCCCCEEEEEECCCcEEEEECCCC--ceEEEEECCCCcEEEEEECCCCC
Confidence 99999998765432 22222 2344677789999999999999999998776 56778889999999999999999
Q ss_pred eeecCCcceEEEEEeeCCcccccccC
Q 047325 342 SSSSTSSCAQRWIVYSGSLDKSDDDV 367 (368)
Q Consensus 342 ~~~~~~~~~~~w~l~sg~~D~~v~i~ 367 (368)
.|++|+.|++|++|
T Consensus 340 ------------~l~sgs~D~~v~vW 353 (354)
T 2pbi_B 340 ------------AFCSGSWDHTLRVW 353 (354)
T ss_dssp ------------CEEEEETTSEEEEE
T ss_pred ------------EEEEEcCCCCEEec
Confidence 78999999999998
No 5
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=100.00 E-value=1.6e-47 Score=321.54 Aligned_cols=277 Identities=18% Similarity=0.187 Sum_probs=222.9
Q ss_pred cCcCCcEEEEEecCC--EEEEccCCCcEEEEcCCc-------------ceecccCCCCCeeEEEEe-CCEEEEEeCCCeE
Q 047325 41 VREEGHIYSLAASKD--LLYTGSDSKNIRVWKNLK-------------EFCGFKASSGLVKAIVIS-GEKIFTGHQDGKI 104 (368)
Q Consensus 41 ~~h~~~i~~~~~~~~--~l~s~~~dg~i~iw~~~~-------------~~~~~~~~~~~v~~~~~~-~~~l~s~~~dg~i 104 (368)
..|...|.+++|+++ +|++++ |+++|+||... .......+...|.+++|+ ++.|++|+.||+|
T Consensus 27 ~~~~~~v~~~~fs~dG~~l~~~s-d~~~r~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~l~~~s~dg~v 105 (344)
T 4gqb_B 27 ACMERQLEAARYRSDGALLLGAS-SLSGRCWAGSLWLFKDPCAAPNEGFCSAGVQTEAGVADLTWVGERGILVASDSGAV 105 (344)
T ss_dssp SSCCSEEEEEEECTTSCEEEEEE-CCSSSCCCEEEEEESSGGGTTCGGGCSEEEEESSCEEEEEEETTTEEEEEETTSEE
T ss_pred ccccCCEEEEEECCCCCEEEEEe-CCceEEeeceeeeeccccccCCcceeeeeeccCCCEEEEEEeCCCeEEEEECCCEE
Confidence 457788999999866 777666 77888887321 011123456789999999 6789999999999
Q ss_pred EEEeecCCCccccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcCCCCEEEEEeCCCcEEEEEcc
Q 047325 105 RVWKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCGLLYTASWDRTFKVWRIS 184 (368)
Q Consensus 105 ~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~ 184 (368)
++||+++++...... ..+.+|.+.|++++|+|++++|++|+.|++|++||++
T Consensus 106 ~lWd~~~~~~~~~~~----------------------------~~~~~H~~~V~~v~~spdg~~l~sgs~d~~i~iwd~~ 157 (344)
T 4gqb_B 106 ELWELDENETLIVSK----------------------------FCKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLA 157 (344)
T ss_dssp EEEEECTTSSCEEEE----------------------------EEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETT
T ss_pred EEEeccCCCceeEee----------------------------ccccCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECC
Confidence 999999876432211 1234599999999999999999999999999999999
Q ss_pred CCeEEEEeecCCCceEEEEeCCCC--eEEEEcCCCeEEEEEcCCCCCCcccccceee--ccccccEEEEEEcC-CCCEEE
Q 047325 185 DSKCLESVSAHDDAVNSVVSSSEG--LIFTGSADGTVKVWKREQHGKGTKHSLAQTL--LKQECAVTALVVSS-SRSIVY 259 (368)
Q Consensus 185 ~~~~~~~~~~~~~~v~~~~~~~~~--~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~--~~~~~~i~~~~~~~-~~~~l~ 259 (368)
+++++..+.+|...|.+++|++++ +|++++.|+.|++||++.... ...+ ..+...+.+++|+| ++++|+
T Consensus 158 ~~~~~~~~~~h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~------~~~~~~~~~~~~~~~~~~~p~~~~~l~ 231 (344)
T 4gqb_B 158 QQVVLSSYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKP------ASQIGCSAPGYLPTSLAWHPQQSEVFV 231 (344)
T ss_dssp TTEEEEEECCCSSCEEEEEECSSCTTEEEEEETTSCEEEEETTSSSC------EEECC----CCCEEEEEECSSCTTEEE
T ss_pred CCcEEEEEcCcCCceEEEEecCCCCCceeeeccccccccccccccce------eeeeecceeeccceeeeecCCCCcceE
Confidence 999999999999999999999987 789999999999999987632 2222 34556789999999 456889
Q ss_pred EecCCCcEEEEeCCCccccceeeeccceEEEEEE--eCC-CEEEEeeCCCeEEEEecCCCceeeeEeeeccccCeeEEEE
Q 047325 260 CGSSDGLVNFWEREKQLSHGGVLKGHKLAVLCLA--AAG-KLVFSGSADKTICVWRRDGAIHTCLSVLTGHTGPVKCLAV 336 (368)
Q Consensus 260 ~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~--~~~-~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~l~~ 336 (368)
+|+.||.|++||+++++.. ..+.+|...|.++. |++ ++|++|+.|++|+|||+.++ + +..+.+|.+.|++++|
T Consensus 232 sg~~dg~v~~wd~~~~~~~-~~~~~h~~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~--~-~~~~~~H~~~V~~v~~ 307 (344)
T 4gqb_B 232 FGDENGTVSLVDTKSTSCV-LSSAVHSQCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLS--E-LFRSQAHRDFVRDATW 307 (344)
T ss_dssp EEETTSEEEEEESCC--CC-EEEECCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTCC--E-EEEECCCSSCEEEEEE
T ss_pred EeccCCcEEEEECCCCcEE-EEEcCCCCCEEEEEEccCCCeEEEEEeCCCeEEEEECCCC--c-EEEEcCCCCCEEEEEE
Confidence 9999999999999987655 56778888876554 566 68999999999999998876 3 3457899999999999
Q ss_pred ecCCeeeecCCcceEEEEEeeCCcccccccC
Q 047325 337 EEDRDSSSSTSSCAQRWIVYSGSLDKSDDDV 367 (368)
Q Consensus 337 ~~~~~~~~~~~~~~~~w~l~sg~~D~~v~i~ 367 (368)
+|++.. +|+|||.|++|++|
T Consensus 308 sp~~~~-----------llas~s~D~~v~~w 327 (344)
T 4gqb_B 308 SPLNHS-----------LLTTVGWDHQVVHH 327 (344)
T ss_dssp CSSSTT-----------EEEEEETTSCEEEE
T ss_pred eCCCCe-----------EEEEEcCCCeEEEE
Confidence 999873 56788888888887
No 6
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=100.00 E-value=7.7e-47 Score=313.25 Aligned_cols=267 Identities=18% Similarity=0.254 Sum_probs=229.7
Q ss_pred ceeeeccCcCCcEEEEEecCC--EEEEccCCCcEEEEcCCcc--eecccCCCCCeeEEEEe--CCEEEEEeCCCeEEEEe
Q 047325 35 GLIGSLVREEGHIYSLAASKD--LLYTGSDSKNIRVWKNLKE--FCGFKASSGLVKAIVIS--GEKIFTGHQDGKIRVWK 108 (368)
Q Consensus 35 ~~~~~~~~h~~~i~~~~~~~~--~l~s~~~dg~i~iw~~~~~--~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~vw~ 108 (368)
++.+++.+|.+.|.+++|+++ +|++|+.||+|++||+.+. +..+..|..+|.+++|. +++|++|+.|++|++||
T Consensus 4 ~~~~~~~~h~~~V~~~~fsp~~~~l~s~~~dg~v~lWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~i~vwd 83 (304)
T 2ynn_A 4 DIKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFN 83 (304)
T ss_dssp CCEEEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEE
T ss_pred eeEEeecCCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCceeEEeeccCCcEEEEEEeCCCCEEEEECCCCEEEEEE
Confidence 456789999999999999866 9999999999999998754 56778899999999998 88999999999999999
Q ss_pred ecCCCccccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcCCCCEEEEEeCCCcEEEEEccCC-e
Q 047325 109 ISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCGLLYTASWDRTFKVWRISDS-K 187 (368)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~-~ 187 (368)
+.+++.. ..+.+|...|.+++|+|++++|++|+.|++|++||++++ .
T Consensus 84 ~~~~~~~--------------------------------~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~ 131 (304)
T 2ynn_A 84 YNTGEKV--------------------------------VDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWA 131 (304)
T ss_dssp TTTCCEE--------------------------------EEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEEGGGTTE
T ss_pred CCCCcEE--------------------------------EEEeCCCCcEEEEEEcCCCCEEEEECCCCeEEEEECCCCcc
Confidence 9877632 234459999999999999999999999999999999887 5
Q ss_pred EEEEeecCCCceEEEEeCCC-C-eEEEEcCCCeEEEEEcCCCCCCcccccceeeccccccEEEEEEcC--CCCEEEEecC
Q 047325 188 CLESVSAHDDAVNSVVSSSE-G-LIFTGSADGTVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSS--SRSIVYCGSS 263 (368)
Q Consensus 188 ~~~~~~~~~~~v~~~~~~~~-~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~~~l~~~~~ 263 (368)
....+.+|...|.+++|+|+ + .|++|+.|+.|++||++.... .......+...+..+.|+| ++++|++|+.
T Consensus 132 ~~~~~~~h~~~v~~v~~~p~~~~~l~sgs~D~~v~iwd~~~~~~-----~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~ 206 (304)
T 2ynn_A 132 LEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTP-----NFTLTTGQERGVNYVDYYPLPDKPYMITASD 206 (304)
T ss_dssp EEEEECCCCSCEEEEEECTTCTTEEEEEETTSEEEEEETTCSSC-----SEEEECCCTTCEEEEEECCSTTCCEEEEEET
T ss_pred hhhhhcccCCcEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCc-----cceeccCCcCcEEEEEEEEcCCCCEEEEEcC
Confidence 66788899999999999994 4 899999999999999976532 2233345667899999987 7789999999
Q ss_pred CCcEEEEeCCCccccceeeeccceEEE--EEEeCCCEEEEeeCCCeEEEEecCCCceeeeEeeeccccCeeEEEEecCCe
Q 047325 264 DGLVNFWEREKQLSHGGVLKGHKLAVL--CLAAAGKLVFSGSADKTICVWRRDGAIHTCLSVLTGHTGPVKCLAVEEDRD 341 (368)
Q Consensus 264 dg~i~i~d~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~ 341 (368)
|+.|++||++++... ..+.+|...+. +++|++++|++|+.||+|++||+.+. +.+..+..|...+.+++|+|++.
T Consensus 207 D~~i~iWd~~~~~~~-~~~~~h~~~v~~~~~~p~~~~l~s~s~Dg~i~iWd~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 283 (304)
T 2ynn_A 207 DLTIKIWDYQTKSCV-ATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTY--KVEKTLNVGLERSWCIATHPTGR 283 (304)
T ss_dssp TSEEEEEETTTTEEE-EEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTC--CEEEEECCSSSSEEEEEECTTCG
T ss_pred CCeEEEEeCCCCccc-eeeCCCCCCEEEEEECCCCCEEEEEcCCCeEEEEECCCC--ceeeeccCCCccEEEEEECCCCC
Confidence 999999999987655 56778877774 55678999999999999999998876 67888889999999999999875
No 7
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5.3e-47 Score=317.79 Aligned_cols=295 Identities=20% Similarity=0.253 Sum_probs=229.3
Q ss_pred CCCceeeeccCcCCcEEEEEecCCEEEEccCCCcEEEEcCCcc----eecc-cC-CCCCeeEEEEe--CCEEEEEeCCCe
Q 047325 32 PQNGLIGSLVREEGHIYSLAASKDLLYTGSDSKNIRVWKNLKE----FCGF-KA-SSGLVKAIVIS--GEKIFTGHQDGK 103 (368)
Q Consensus 32 ~~~~~~~~~~~h~~~i~~~~~~~~~l~s~~~dg~i~iw~~~~~----~~~~-~~-~~~~v~~~~~~--~~~l~s~~~dg~ 103 (368)
+..+++.++.+|.++|++++|++++|++|+.|++|++||+... ...+ .. |...|.+++|+ +++|++|+.|++
T Consensus 2 ~~~~~~~~~~~h~~~v~~~~~s~~~las~~~D~~i~lw~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D~~ 81 (330)
T 2hes_X 2 ASINLIKSLKLYKEKIWSFDFSQGILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRPHTSLLAAGSFDST 81 (330)
T ss_dssp -CCEEEEEEECCSSCEEEEEEETTEEEEEESSSCEEEEECSSSCCEEEEEECTTCCCSCEEEEEECTTSSEEEEEETTSC
T ss_pred cccccceeeccCCCceeeeccCCCEEEEEcCCCEEEEEEecCCCeEEEEEEecCCccCCEEEEEECCCCCEEEEEeCCCc
Confidence 3455678899999999999999999999999999999998742 2233 34 99999999998 789999999999
Q ss_pred EEEEeecCCCccccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcCCCCEEEEEeCCCcEEEEEc
Q 047325 104 IRVWKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCGLLYTASWDRTFKVWRI 183 (368)
Q Consensus 104 i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~ 183 (368)
|++||++....... .......+.+|...|.+++|+|++++|++|+.|+.|++||+
T Consensus 82 v~iw~~~~~~~~~~-------------------------~~~~~~~~~~h~~~V~~v~~sp~g~~las~s~D~~v~iwd~ 136 (330)
T 2hes_X 82 VSIWAKEESADRTF-------------------------EMDLLAIIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWET 136 (330)
T ss_dssp EEEEEC-------C-------------------------CCEEEEEEC----CEEEEEECTTSCEEEEEETTSCEEEEEC
T ss_pred EEEEEcccCcCccc-------------------------cceeEEEEcCCCCcEEEEEECCCCCEEEEEeCCCEEEEEec
Confidence 99999864321000 00112345579999999999999999999999999999999
Q ss_pred cC----CeEEEEeecCCCceEEEEeCCCC-eEEEEcCCCeEEEEEcCCCCCCcccccceeeccccccEEEEEEcCC--CC
Q 047325 184 SD----SKCLESVSAHDDAVNSVVSSSEG-LIFTGSADGTVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSSS--RS 256 (368)
Q Consensus 184 ~~----~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~--~~ 256 (368)
+. .+++..+.+|...|.+++|+|++ +|++++.|+.|++||.+... ..+...+.+|...|.+++|+|+ +.
T Consensus 137 ~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~iW~~~~~~----~~~~~~~~~h~~~v~~~~~~~~~~~~ 212 (330)
T 2hes_X 137 DESGEEYECISVLQEHSQDVKHVIWHPSEALLASSSYDDTVRIWKDYDDD----WECVAVLNGHEGTVWSSDFDKTEGVF 212 (330)
T ss_dssp CTTCCCCEEEEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEEEETTE----EEEEEEECCCSSCEEEEEECCSSSSC
T ss_pred cCCCCCeEEEEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCC----eeEEEEccCCCCcEEEEEecCCCCee
Confidence 43 35678889999999999999999 99999999999999986531 1345677889999999999998 67
Q ss_pred EEEEecCCCcEEEEeCCCcc-------ccceeee-ccceEEEEEEe-CCCEEEEeeCCCeEEEEecCCCceeeeE-eeec
Q 047325 257 IVYCGSSDGLVNFWEREKQL-------SHGGVLK-GHKLAVLCLAA-AGKLVFSGSADKTICVWRRDGAIHTCLS-VLTG 326 (368)
Q Consensus 257 ~l~~~~~dg~i~i~d~~~~~-------~~~~~~~-~~~~~~~~~~~-~~~~l~~~~~dg~i~iw~~~~~~~~~~~-~~~~ 326 (368)
+|++|+.|+.|++||++... .....+. .|...+.++.+ .+.+|++++.||.|++|+...+...... ...+
T Consensus 213 ~l~s~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~ 292 (330)
T 2hes_X 213 RLCSGSDDSTVRVWKYMGDDEDDQQEWVCEAILPDVHKRQVYNVAWGFNGLIASVGADGVLAVYEEVDGEWKVFAKRALC 292 (330)
T ss_dssp EEEEEETTSCEEEEEEEEECTTSCEEEEEEEECCSCCSSCEEEEEECTTSCEEEEETTSCEEEEEEETTEEEEEEEESCT
T ss_pred EEEEEeCCCeEEEEEecCCCccccceeEEeeecccccccceEEEEEcCCCEEEEEeCCCEEEEEEcCCCceEEEeccccc
Confidence 89999999999999987542 1112222 37778877776 3568999999999999998766433333 3467
Q ss_pred ccc-CeeEEEEec--CCeeeecCCcceEEEEEeeCCcccccccC
Q 047325 327 HTG-PVKCLAVEE--DRDSSSSTSSCAQRWIVYSGSLDKSDDDV 367 (368)
Q Consensus 327 h~~-~v~~l~~~~--~~~~~~~~~~~~~~w~l~sg~~D~~v~i~ 367 (368)
|.. .|++++|+| ++. .|++|+.||+|++|
T Consensus 293 h~~~~v~~v~~~~~~~~~------------~las~s~Dg~v~~W 324 (330)
T 2hes_X 293 HGVYEINVVKWLELNGKT------------ILATGGDDGIVNFW 324 (330)
T ss_dssp TTTSCEEEEEEC-----C------------CEEEEETTSEEEEE
T ss_pred cccceEEEEEEecCCCce------------EEEEecCCCcEEEE
Confidence 887 899999999 677 68889999999988
No 8
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=100.00 E-value=2e-47 Score=326.68 Aligned_cols=290 Identities=20% Similarity=0.312 Sum_probs=239.8
Q ss_pred CCceeeeccCcCCcEEEEEecCC--EEEEccCCCcEEEEcCCc--ceecccCCCCCeeEEEEe--CCEEEEEeCCCeEEE
Q 047325 33 QNGLIGSLVREEGHIYSLAASKD--LLYTGSDSKNIRVWKNLK--EFCGFKASSGLVKAIVIS--GEKIFTGHQDGKIRV 106 (368)
Q Consensus 33 ~~~~~~~~~~h~~~i~~~~~~~~--~l~s~~~dg~i~iw~~~~--~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~v 106 (368)
......++.+|.+.|++++|+++ +|++|+.||+|++||..+ ....+..|...|.+++|+ +++|++|+.|+.+++
T Consensus 55 ~~~~~~~l~gH~~~V~~~~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~h~~~v~~~~~s~~g~~las~~~d~~v~i 134 (380)
T 3iz6_a 55 DLVCCRTLQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTHAIKLHCPWVMECAFAPNGQSVACGGLDSACSI 134 (380)
T ss_dssp CCEEEEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEECCCTTCCCCEECTTSSEEEECCSSSCCEE
T ss_pred eeEEeecccccccEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCccceEEecCCCCEEEEEECCCCCEEEEeeCCCcEEE
Confidence 34567889999999999999865 999999999999999864 456788999999999998 889999999999999
Q ss_pred EeecCCCccccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcCC-CCEEEEEeCCCcEEEEEccC
Q 047325 107 WKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQD-CGLLYTASWDRTFKVWRISD 185 (368)
Q Consensus 107 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~d~~i~iwd~~~ 185 (368)
|++.+....... ......+.+|...|.++.|.|+ +..|++|+.|++|++||+.+
T Consensus 135 w~~~~~~~~~~~-------------------------~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~ 189 (380)
T 3iz6_a 135 FNLSSQADRDGN-------------------------MPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTT 189 (380)
T ss_dssp EECCCCSSCCCS-------------------------STTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTT
T ss_pred EECCCCccccCC-------------------------ccceeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCC
Confidence 999764321100 0011234569999999999996 45799999999999999999
Q ss_pred CeEEEEe-----ecCCCceEEEEeCC-CC-eEEEEcCCCeEEEEEcCCCCCCcccccceeeccccccEEEEEEcCCCCEE
Q 047325 186 SKCLESV-----SAHDDAVNSVVSSS-EG-LIFTGSADGTVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSSSRSIV 258 (368)
Q Consensus 186 ~~~~~~~-----~~~~~~v~~~~~~~-~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l 258 (368)
++.+..+ .+|...|.++.+++ ++ ++++|+.|+.|++||++.... ....+.+|...|.+++|+|++++|
T Consensus 190 ~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sgs~D~~v~~wd~~~~~~-----~~~~~~~h~~~v~~v~~~p~~~~l 264 (380)
T 3iz6_a 190 GQRISIFGSEFPSGHTADVLSLSINSLNANMFISGSCDTTVRLWDLRITSR-----AVRTYHGHEGDINSVKFFPDGQRF 264 (380)
T ss_dssp CCEEEEECCCSSSSCCSCEEEEEECSSSCCEEEEEETTSCEEEEETTTTCC-----CCEEECCCSSCCCEEEECTTSSEE
T ss_pred CcEEEEeecccCCCCccCeEEEEeecCCCCEEEEEECCCeEEEEECCCCCc-----ceEEECCcCCCeEEEEEecCCCeE
Confidence 9988877 57889999999987 55 999999999999999985432 466778899999999999999999
Q ss_pred EEecCCCcEEEEeCCCccccceeeecc---------ceEEEEEEeCCCEEEEeeCCCeEEEEecCCCceeeeEee----e
Q 047325 259 YCGSSDGLVNFWEREKQLSHGGVLKGH---------KLAVLCLAAAGKLVFSGSADKTICVWRRDGAIHTCLSVL----T 325 (368)
Q Consensus 259 ~~~~~dg~i~i~d~~~~~~~~~~~~~~---------~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~----~ 325 (368)
++|+.||.|++||++++..... +..+ ....++++|++++|++|+.||.|++||+... +.+..+ .
T Consensus 265 ~s~s~D~~i~lwd~~~~~~~~~-~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~vwd~~~~--~~~~~~~~~~~ 341 (380)
T 3iz6_a 265 GTGSDDGTCRLFDMRTGHQLQV-YNREPDRNDNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLA--EMVLNLGTLQN 341 (380)
T ss_dssp EEECSSSCEEEEETTTTEEEEE-ECCCCSSSCCSSCSCSEEEECSSSSEEEEECTTSCEEEEETTTC--CEEEEECCSCS
T ss_pred EEEcCCCeEEEEECCCCcEEEE-ecccccccccccCceEEEEECCCCCEEEEEECCCCEEEEECCCC--ceEEEEecccC
Confidence 9999999999999998765432 2211 1345778889999999999999999998765 344444 6
Q ss_pred ccccCeeEEEEecCCeeeecCCcceEEEEEeeCCcccccccC
Q 047325 326 GHTGPVKCLAVEEDRDSSSSTSSCAQRWIVYSGSLDKSDDDV 367 (368)
Q Consensus 326 ~h~~~v~~l~~~~~~~~~~~~~~~~~~w~l~sg~~D~~v~i~ 367 (368)
+|.+.|++++|+|++. .|+||+.|++|++|
T Consensus 342 ~h~~~v~~l~~s~dg~------------~l~sgs~D~~i~iW 371 (380)
T 3iz6_a 342 SHEGRISCLGLSSDGS------------ALCTGSWDKNLKIW 371 (380)
T ss_dssp SCCCCCCEEEECSSSS------------EEEEECTTSCEEEE
T ss_pred CCCCceEEEEECCCCC------------EEEEeeCCCCEEEE
Confidence 7999999999999999 67888888888887
No 9
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=100.00 E-value=1e-46 Score=319.14 Aligned_cols=280 Identities=20% Similarity=0.238 Sum_probs=223.7
Q ss_pred cCcCCcEEEEEecCC--EEEEccC------CCcEEEEcCCcc------eecccCCCCCeeEEEEe-CCEEEEEeCCCeEE
Q 047325 41 VREEGHIYSLAASKD--LLYTGSD------SKNIRVWKNLKE------FCGFKASSGLVKAIVIS-GEKIFTGHQDGKIR 105 (368)
Q Consensus 41 ~~h~~~i~~~~~~~~--~l~s~~~------dg~i~iw~~~~~------~~~~~~~~~~v~~~~~~-~~~l~s~~~dg~i~ 105 (368)
.+|++.|.+++|+++ +||+|+. |+.|++|+..+. ......|...|.+++|+ .+.+++++.||+|+
T Consensus 39 ~~H~~~V~~v~fSpDG~~las~s~d~~~~wd~~v~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~d~~~l~~s~dg~v~ 118 (357)
T 4g56_B 39 ACMEVQIGAVRYRRDGALLLAASSLSSRTWGGSIWVFKDPEGAPNESLCTAGVQTEAGVTDVAWVSEKGILVASDSGAVE 118 (357)
T ss_dssp -CCCSEEEEEEECSSSCEEEEEECSSSSSCCEEEEEESSCC---CGGGCSEEEECSSCEEEEEEETTTEEEEEETTSCEE
T ss_pred ccccCCEEEEEECCCCCEEEEEcCCCCccccCeEEEEECCCCCcceeEecccCCCCCCEEEEEEcCCCCEEEEECCCEEE
Confidence 479999999999866 9999997 778999987543 22345788999999999 66888999999999
Q ss_pred EEeecCCCccccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcCCCCEEEEEeCCCcEEEEEccC
Q 047325 106 VWKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCGLLYTASWDRTFKVWRISD 185 (368)
Q Consensus 106 vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~ 185 (368)
+||+.+++....... ...+|...|++++|+|++++|++++.|+.|++||+++
T Consensus 119 lWd~~~~~~~~~~~~----------------------------~~~~h~~~V~~v~~spdg~~l~sgs~dg~v~iwd~~~ 170 (357)
T 4g56_B 119 LWEILEKESLLVNKF----------------------------AKYEHDDIVKTLSVFSDGTQAVSGGKDFSVKVWDLSQ 170 (357)
T ss_dssp EC--------CCCCE----------------------------EECCCSSCEEEEEECSSSSEEEEEETTSCEEEEETTT
T ss_pred EeeccccceeEEEee----------------------------ccCCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCC
Confidence 999988764332211 1234899999999999999999999999999999999
Q ss_pred CeEEEEeecCCCceEEEEeCCCC--eEEEEcCCCeEEEEEcCCCCCCcccccceeeccccccEEEEEEcCC-CCEEEEec
Q 047325 186 SKCLESVSAHDDAVNSVVSSSEG--LIFTGSADGTVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSSS-RSIVYCGS 262 (368)
Q Consensus 186 ~~~~~~~~~~~~~v~~~~~~~~~--~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~l~~~~ 262 (368)
++.+..+.+|...|.+++|++++ .+++++.|+.|++||++.... ........+...+.+++|+|+ +.+|++|+
T Consensus 171 ~~~~~~~~~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~----~~~~~~~~~~~~v~~v~~sp~~~~~la~g~ 246 (357)
T 4g56_B 171 KAVLKSYNAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKP----ATRIDFCASDTIPTSVTWHPEKDDTFACGD 246 (357)
T ss_dssp TEEEEEECCCSSCEEEEEECTTCSSCEEEEETTSCEEECCTTSSSC----BCBCCCTTCCSCEEEEEECTTSTTEEEEEE
T ss_pred CcEEEEEcCCCCCEEEEEEccCCCceeeeeccCCceEEEECCCCce----eeeeeeccccccccchhhhhcccceEEEee
Confidence 99999999999999999999987 789999999999999987633 122234456778999999997 56899999
Q ss_pred CCCcEEEEeCCCccccceeeeccceEEEEEE--eCC-CEEEEeeCCCeEEEEecCCCceeeeEeeeccccCeeEEEEec-
Q 047325 263 SDGLVNFWEREKQLSHGGVLKGHKLAVLCLA--AAG-KLVFSGSADKTICVWRRDGAIHTCLSVLTGHTGPVKCLAVEE- 338 (368)
Q Consensus 263 ~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~--~~~-~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~l~~~~- 338 (368)
.|+.|++||+++++.. ..+.+|...+.++. |++ ++|++|+.||+|+|||++++ +.+.. .+|.+.|++|+|+|
T Consensus 247 ~d~~i~~wd~~~~~~~-~~~~~~~~~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~~--~~~~~-~~H~~~V~~vafsP~ 322 (357)
T 4g56_B 247 ETGNVSLVNIKNPDSA-QTSAVHSQNITGLAYSYHSSPFLASISEDCTVAVLDADFS--EVFRD-LSHRDFVTGVAWSPL 322 (357)
T ss_dssp SSSCEEEEESSCGGGC-EEECCCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTSC--EEEEE-CCCSSCEEEEEECSS
T ss_pred cccceeEEECCCCcEe-EEEeccceeEEEEEEcCCCCCEEEEEeCCCEEEEEECCCC--cEeEE-CCCCCCEEEEEEeCC
Confidence 9999999999987655 56677877776555 565 68999999999999998876 44444 47999999999998
Q ss_pred CCeeeecCCcceEEEEEeeCCcccccccCC
Q 047325 339 DRDSSSSTSSCAQRWIVYSGSLDKSDDDVH 368 (368)
Q Consensus 339 ~~~~~~~~~~~~~~w~l~sg~~D~~v~i~h 368 (368)
++. .|+|||.|++|++|+
T Consensus 323 d~~------------~l~s~s~Dg~v~iW~ 340 (357)
T 4g56_B 323 DHS------------KFTTVGWDHKVLHHH 340 (357)
T ss_dssp STT------------EEEEEETTSCEEEEE
T ss_pred CCC------------EEEEEcCCCeEEEEE
Confidence 677 677777788887773
No 10
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=100.00 E-value=4.3e-46 Score=310.78 Aligned_cols=279 Identities=22% Similarity=0.373 Sum_probs=232.2
Q ss_pred ceeeeccCcCCcEEEEEecC---CEEEEccCCCcEEEEcCCc-------ceecccCCCCCeeEEEEe--CCEEEEEeCCC
Q 047325 35 GLIGSLVREEGHIYSLAASK---DLLYTGSDSKNIRVWKNLK-------EFCGFKASSGLVKAIVIS--GEKIFTGHQDG 102 (368)
Q Consensus 35 ~~~~~~~~h~~~i~~~~~~~---~~l~s~~~dg~i~iw~~~~-------~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg 102 (368)
.+..++.+|.+.|++++|++ ++|++|+.|++|++|++.. .+..+.+|...|.+++|+ +.+|++|+.|+
T Consensus 8 ~l~~~l~gH~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~ 87 (319)
T 3frx_A 8 VLRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDK 87 (319)
T ss_dssp EEEEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTEEEEEEEEEECCSSCEEEEEECTTSSEEEEEETTS
T ss_pred EEEEEEccccceEEEEEccCCCccEEEEecCCccEEEecCCCCCccccccceEEeCCcccEEEEEECCCCCEEEEEeCCC
Confidence 45678999999999999974 4999999999999999752 245688999999999998 78999999999
Q ss_pred eEEEEeecCCCccccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcCCCCEEEEEeCCCcEEEEE
Q 047325 103 KIRVWKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCGLLYTASWDRTFKVWR 182 (368)
Q Consensus 103 ~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd 182 (368)
+|++||+.+++.. ..+.+|...|.+++|+|++.+|++++.|+.|++||
T Consensus 88 ~v~~wd~~~~~~~--------------------------------~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vwd 135 (319)
T 3frx_A 88 TLRLWDVATGETY--------------------------------QRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWT 135 (319)
T ss_dssp EEEEEETTTTEEE--------------------------------EEEECCSSCEEEEEECTTSCEEEEEETTSCEEEEE
T ss_pred EEEEEECCCCCee--------------------------------EEEccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEE
Confidence 9999999877532 23455999999999999999999999999999999
Q ss_pred ccCCeEEEEeecCCCceEEEEeCCC------C-eEEEEcCCCeEEEEEcCCCCCCcccccceeeccccccEEEEEEcCCC
Q 047325 183 ISDSKCLESVSAHDDAVNSVVSSSE------G-LIFTGSADGTVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSSSR 255 (368)
Q Consensus 183 ~~~~~~~~~~~~~~~~v~~~~~~~~------~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 255 (368)
++ ++.+..+.+|...|.++.+.|. + .+++++.|+.|++||++.. .....+.+|...|.+++|+|++
T Consensus 136 ~~-~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~------~~~~~~~~h~~~v~~~~~sp~g 208 (319)
T 3frx_A 136 IK-GQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQF------QIEADFIGHNSNINTLTASPDG 208 (319)
T ss_dssp TT-SCEEEEECCCSSCEEEEEECCC------CCEEEEEETTSCEEEEETTTT------EEEEEECCCCSCEEEEEECTTS
T ss_pred CC-CCeEEEEeccCCcEEEEEEccCCCCCCCccEEEEEeCCCEEEEEECCcc------hhheeecCCCCcEEEEEEcCCC
Confidence 96 5677888899999999999884 3 7999999999999999864 3456677899999999999999
Q ss_pred CEEEEecCCCcEEEEeCCCccccceeeeccceEEEEEEeCCCEEEEeeCCCeEEEEecCCCceeeeEeee--------cc
Q 047325 256 SIVYCGSSDGLVNFWEREKQLSHGGVLKGHKLAVLCLAAAGKLVFSGSADKTICVWRRDGAIHTCLSVLT--------GH 327 (368)
Q Consensus 256 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~--------~h 327 (368)
++|++++.||.|++||+++.+.............++++|++.+|++++.+ .+++|+++.. ..+..+. .|
T Consensus 209 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~sp~~~~la~~~~~-~i~v~~~~~~--~~~~~~~~~~~~~~~~~ 285 (319)
T 3frx_A 209 TLIASAGKDGEIMLWNLAAKKAMYTLSAQDEVFSLAFSPNRYWLAAATAT-GIKVFSLDPQ--YLVDDLRPEFAGYSKAA 285 (319)
T ss_dssp SEEEEEETTCEEEEEETTTTEEEEEEECCSCEEEEEECSSSSEEEEEETT-EEEEEEETTE--EEEEEECCCCTTCCGGG
T ss_pred CEEEEEeCCCeEEEEECCCCcEEEEecCCCcEEEEEEcCCCCEEEEEcCC-CcEEEEeCcC--eeeeccCccccccccCc
Confidence 99999999999999999987665433333334447777899999988755 5999998765 3333332 35
Q ss_pred ccCeeEEEEecCCeeeecCCcceEEEEEeeCCcccccccC
Q 047325 328 TGPVKCLAVEEDRDSSSSTSSCAQRWIVYSGSLDKSDDDV 367 (368)
Q Consensus 328 ~~~v~~l~~~~~~~~~~~~~~~~~~w~l~sg~~D~~v~i~ 367 (368)
...+.+++|+|+|+ .|++|+.|+.|++|
T Consensus 286 ~~~v~~~~~spdg~------------~l~sg~~Dg~i~vW 313 (319)
T 3frx_A 286 EPHAVSLAWSADGQ------------TLFAGYTDNVIRVW 313 (319)
T ss_dssp CCCEEEEEECTTSS------------EEEEEETTSCEEEE
T ss_pred CcceeEEEECCCCC------------EEEEeecCceEEEE
Confidence 67799999999999 56777777777776
No 11
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=100.00 E-value=1.6e-45 Score=306.87 Aligned_cols=284 Identities=22% Similarity=0.384 Sum_probs=241.0
Q ss_pred CCCceeeeccCcCCcEEEEEecCC--EEEEccCCCcEEEEcCCc--ceecccCCCCCeeEEEEe--CCEEEEEeCCCeEE
Q 047325 32 PQNGLIGSLVREEGHIYSLAASKD--LLYTGSDSKNIRVWKNLK--EFCGFKASSGLVKAIVIS--GEKIFTGHQDGKIR 105 (368)
Q Consensus 32 ~~~~~~~~~~~h~~~i~~~~~~~~--~l~s~~~dg~i~iw~~~~--~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~ 105 (368)
|...+..++.+|.+.|++++|+++ +|++|+.||.|++|+... ....+.+|...|.+++|+ +++|++++.||.|+
T Consensus 11 ~~~~~~~~~~gh~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~ 90 (312)
T 4ery_A 11 PNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLK 90 (312)
T ss_dssp CCCEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEE
T ss_pred CCceeEEEEcccCCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcccchhhccCCCceEEEEEcCCCCEEEEECCCCEEE
Confidence 456677889999999999999865 999999999999999864 355678999999999998 78999999999999
Q ss_pred EEeecCCCccccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcCCCCEEEEEeCCCcEEEEEccC
Q 047325 106 VWKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCGLLYTASWDRTFKVWRISD 185 (368)
Q Consensus 106 vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~ 185 (368)
+||+++++.. ..+.+|...|.+++|+|++++|++++.|+.|++||+++
T Consensus 91 vwd~~~~~~~--------------------------------~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~ 138 (312)
T 4ery_A 91 IWDVSSGKCL--------------------------------KTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKT 138 (312)
T ss_dssp EEETTTCCEE--------------------------------EEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTT
T ss_pred EEECCCCcEE--------------------------------EEEcCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCC
Confidence 9999876532 22345899999999999999999999999999999999
Q ss_pred CeEEEEeecCCCceEEEEeCCCC-eEEEEcCCCeEEEEEcCCCCCCcccccceeeccccccEEEEEEcCCCCEEEEecCC
Q 047325 186 SKCLESVSAHDDAVNSVVSSSEG-LIFTGSADGTVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSSSRSIVYCGSSD 264 (368)
Q Consensus 186 ~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d 264 (368)
++.+..+..|..+|.+++|+|++ ++++++.||.|++||++.... .......+...+..++|+|++++|++++.|
T Consensus 139 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d 213 (312)
T 4ery_A 139 GKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQC-----LKTLIDDDNPPVSFVKFSPNGKYILAATLD 213 (312)
T ss_dssp CCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCE-----EEEECCSSCCCEEEEEECTTSSEEEEEETT
T ss_pred CEEEEEecCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEECCCCce-----eeEEeccCCCceEEEEECCCCCEEEEEcCC
Confidence 99999999999999999999999 999999999999999986532 122234566789999999999999999999
Q ss_pred CcEEEEeCCCccccceeeeccceEE----EEEE-eCCCEEEEeeCCCeEEEEecCCCceeeeEeeeccccCeeEEEEecC
Q 047325 265 GLVNFWEREKQLSHGGVLKGHKLAV----LCLA-AAGKLVFSGSADKTICVWRRDGAIHTCLSVLTGHTGPVKCLAVEED 339 (368)
Q Consensus 265 g~i~i~d~~~~~~~~~~~~~~~~~~----~~~~-~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~l~~~~~ 339 (368)
|.|++||+++++.. ..+.+|.... ..+. +++.+|++|+.||.|++||+.+. +.+..+.+|...|.+++|+|+
T Consensus 214 ~~i~iwd~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~~--~~~~~~~~h~~~v~~~~~~p~ 290 (312)
T 4ery_A 214 NTLKLWDYSKGKCL-KTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTK--EIVQKLQGHTDVVISTACHPT 290 (312)
T ss_dssp TEEEEEETTTTEEE-EEECSSCCSSSCCCEEEECSSSCEEEECCTTSCEEEEETTTC--CEEEEECCCSSCEEEEEECSS
T ss_pred CeEEEEECCCCcEE-EEEEecCCceEEEEEEEEeCCCcEEEEECCCCEEEEEECCCc--hhhhhhhccCCcEEEEeecCc
Confidence 99999999987654 3444554322 2334 46889999999999999999876 678889999999999999999
Q ss_pred CeeeecCCcceEEEEEeeCC--cccccccC
Q 047325 340 RDSSSSTSSCAQRWIVYSGS--LDKSDDDV 367 (368)
Q Consensus 340 ~~~~~~~~~~~~~w~l~sg~--~D~~v~i~ 367 (368)
+. .+++++ .|++|++|
T Consensus 291 ~~------------~l~s~~~~~d~~i~~W 308 (312)
T 4ery_A 291 EN------------IIASAALENDKTIKLW 308 (312)
T ss_dssp SS------------EEEEEECTTTCCEEEE
T ss_pred CC------------ceEEEEccCCccEEEe
Confidence 99 566654 68888887
No 12
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=100.00 E-value=8.4e-46 Score=312.39 Aligned_cols=281 Identities=19% Similarity=0.282 Sum_probs=226.3
Q ss_pred CceeeeccCcCCcEEEEEe-----c---CCEEEEccCCCcEEEEcCCc---------ceecccCCCCCeeEEEEe--CCE
Q 047325 34 NGLIGSLVREEGHIYSLAA-----S---KDLLYTGSDSKNIRVWKNLK---------EFCGFKASSGLVKAIVIS--GEK 94 (368)
Q Consensus 34 ~~~~~~~~~h~~~i~~~~~-----~---~~~l~s~~~dg~i~iw~~~~---------~~~~~~~~~~~v~~~~~~--~~~ 94 (368)
......+.+|.+.|++++| + +.+|++|+.|++|++||+.. ....+.+|...|.+++|+ +.+
T Consensus 11 ~~~~~~l~gH~~~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~~ 90 (343)
T 2xzm_R 11 VVKRGILEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENCF 90 (343)
T ss_dssp EEEEEEEECCSSCEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEECSSTTE
T ss_pred eeeeeeeccchhhhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCcccccccccchhccCCCceEEEEECCCCCE
Confidence 4556789999999999998 3 45999999999999999753 234578999999999998 779
Q ss_pred EEEEeCCCeEEEEeecCCCccccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcCCCCEEEEEeC
Q 047325 95 IFTGHQDGKIRVWKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCGLLYTASW 174 (368)
Q Consensus 95 l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~ 174 (368)
+++|+.|++|++||+++++.. ..+.+|...|.+++|+|++++|++++.
T Consensus 91 l~s~s~D~~v~lwd~~~~~~~--------------------------------~~~~~h~~~v~~v~~sp~~~~l~s~~~ 138 (343)
T 2xzm_R 91 AISSSWDKTLRLWDLRTGTTY--------------------------------KRFVGHQSEVYSVAFSPDNRQILSAGA 138 (343)
T ss_dssp EEEEETTSEEEEEETTSSCEE--------------------------------EEEECCCSCEEEEEECSSTTEEEEEET
T ss_pred EEEEcCCCcEEEEECCCCcEE--------------------------------EEEcCCCCcEEEEEECCCCCEEEEEcC
Confidence 999999999999999876532 234459999999999999999999999
Q ss_pred CCcEEEEEccCCeEEEEee---cCCCceEEEEeCCCC-----------eEEEEcCCCeEEEEEcCCCCCCcccccceeec
Q 047325 175 DRTFKVWRISDSKCLESVS---AHDDAVNSVVSSSEG-----------LIFTGSADGTVKVWKREQHGKGTKHSLAQTLL 240 (368)
Q Consensus 175 d~~i~iwd~~~~~~~~~~~---~~~~~v~~~~~~~~~-----------~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~ 240 (368)
|+.|++||+... ...... .|...|.+++|+|++ ++++++.|+.|++||.+. .....+.
T Consensus 139 d~~i~~wd~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~-------~~~~~~~ 210 (343)
T 2xzm_R 139 EREIKLWNILGE-CKFSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNTNF-------QIRYTFK 210 (343)
T ss_dssp TSCEEEEESSSC-EEEECCTTTSCSSCEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEETTT-------EEEEEEE
T ss_pred CCEEEEEeccCC-ceeeeecccCCCceeeeeeeccccccccccCCCCCEEEEEcCCCEEEEEcCCC-------ceeEEEc
Confidence 999999999743 333333 688899999999874 799999999999999542 2455677
Q ss_pred cccccEEEEEEcCCCCEEEEecCCCcEEEEeCCCccccceee-eccceEEEEEEeCCCEEEEeeCCCeEEEEecCCCcee
Q 047325 241 KQECAVTALVVSSSRSIVYCGSSDGLVNFWEREKQLSHGGVL-KGHKLAVLCLAAAGKLVFSGSADKTICVWRRDGAIHT 319 (368)
Q Consensus 241 ~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~ 319 (368)
.|...|.+++|+|++++|++|+.||.|++||+.........+ .++....++++|++.++++| .|+.|++|++.+....
T Consensus 211 ~h~~~v~~~~~s~~g~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~~v~~v~~sp~~~~la~~-~d~~v~iw~~~~~~~~ 289 (343)
T 2xzm_R 211 AHESNVNHLSISPNGKYIATGGKDKKLLIWDILNLTYPQREFDAGSTINQIAFNPKLQWVAVG-TDQGVKIFNLMTQSKA 289 (343)
T ss_dssp CCSSCEEEEEECTTSSEEEEEETTCEEEEEESSCCSSCSEEEECSSCEEEEEECSSSCEEEEE-ESSCEEEEESSSCCSC
T ss_pred CccccceEEEECCCCCEEEEEcCCCeEEEEECCCCcccceeecCCCcEEEEEECCCCCEEEEE-CCCCEEEEEeCCCCCC
Confidence 899999999999999999999999999999995443333333 34455557777888887655 5788999999765433
Q ss_pred eeEeee-----------ccccCeeEEEEecCCeeeecCCcceEEEEEeeCCcccccccC
Q 047325 320 CLSVLT-----------GHTGPVKCLAVEEDRDSSSSTSSCAQRWIVYSGSLDKSDDDV 367 (368)
Q Consensus 320 ~~~~~~-----------~h~~~v~~l~~~~~~~~~~~~~~~~~~w~l~sg~~D~~v~i~ 367 (368)
.+..+. +|...|++++|+|++. .|++|+.||+|++|
T Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~------------~l~sg~~Dg~v~~w 336 (343)
T 2xzm_R 290 PVCTIEAEPITKAEGQKGKNPQCTSLAWNALGK------------KLFAGFTDGVIRTF 336 (343)
T ss_dssp SEEECCCCSGGGBTTBCCSCCCEEEEEECSSSC------------CEEEEETTSEEEEE
T ss_pred ceEEeecCcchhhhhhcCCCCceEEEEECCCCC------------eEEEecCCceEEEE
Confidence 322333 6888999999999999 56777777777776
No 13
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=100.00 E-value=6.5e-46 Score=313.12 Aligned_cols=288 Identities=20% Similarity=0.280 Sum_probs=231.5
Q ss_pred ceeeeccCcCC-cEEEEEecCC--EEEEccCCCcEEEEcCCcce-----ecccCCCCCeeEEEEe--CCEEEEEeCCCeE
Q 047325 35 GLIGSLVREEG-HIYSLAASKD--LLYTGSDSKNIRVWKNLKEF-----CGFKASSGLVKAIVIS--GEKIFTGHQDGKI 104 (368)
Q Consensus 35 ~~~~~~~~h~~-~i~~~~~~~~--~l~s~~~dg~i~iw~~~~~~-----~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i 104 (368)
.++.++.+|.+ .|++++|+++ +||+|+.|++|+|||+.... ....+|...|.+++|+ +++|++|+.|+++
T Consensus 6 ~~~~~~~~h~~~~v~~l~~sp~g~~las~~~D~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~s~D~~v 85 (345)
T 3fm0_A 6 VLLGRVPAHPDSRCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASFDATT 85 (345)
T ss_dssp EEEEEECCSTTSCEEEEEECTTSSCEEEEETTSCEEEEEEETTEEEEEEEECSSCSSCEEEEEECTTSSEEEEEETTSCE
T ss_pred EEeeeecCCCCCcEEEEEECCCCCEEEEEcCCCeEEEEEcCCCcceeeeeeccccCCcEEEEEECCCCCEEEEEECCCcE
Confidence 46788999998 9999999865 99999999999999987532 2246899999999998 7899999999999
Q ss_pred EEEeecCCCccccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcCCCCEEEEEeCCCcEEEEEcc
Q 047325 105 RVWKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCGLLYTASWDRTFKVWRIS 184 (368)
Q Consensus 105 ~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~ 184 (368)
++|++..+... ....+.+|...|.+++|+|++++|++|+.|+.|++||+.
T Consensus 86 ~iw~~~~~~~~------------------------------~~~~~~~h~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~ 135 (345)
T 3fm0_A 86 CIWKKNQDDFE------------------------------CVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVD 135 (345)
T ss_dssp EEEEECCC-EE------------------------------EEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEEC
T ss_pred EEEEccCCCeE------------------------------EEEEccCCCCCceEEEEeCCCCEEEEEECCCeEEEEECC
Confidence 99998765321 122344599999999999999999999999999999998
Q ss_pred CC---eEEEEeecCCCceEEEEeCCCC-eEEEEcCCCeEEEEEcCCCCCCcccccceeeccccccEEEEEEcCCCCEEEE
Q 047325 185 DS---KCLESVSAHDDAVNSVVSSSEG-LIFTGSADGTVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSSSRSIVYC 260 (368)
Q Consensus 185 ~~---~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~ 260 (368)
++ +++..+.+|...|.+++|+|++ +|++++.|+.|++||.+... ......+.+|...|.+++|+|++++|++
T Consensus 136 ~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~i~~w~~~~~~----~~~~~~~~~h~~~v~~l~~sp~g~~l~s 211 (345)
T 3fm0_A 136 EEDEYECVSVLNSHTQDVKHVVWHPSQELLASASYDDTVKLYREEEDD----WVCCATLEGHESTVWSLAFDPSGQRLAS 211 (345)
T ss_dssp TTSCEEEEEEECCCCSCEEEEEECSSSSCEEEEETTSCEEEEEEETTE----EEEEEEECCCSSCEEEEEECTTSSEEEE
T ss_pred CCCCeEEEEEecCcCCCeEEEEECCCCCEEEEEeCCCcEEEEEecCCC----EEEEEEecCCCCceEEEEECCCCCEEEE
Confidence 76 4567788899999999999999 99999999999999987542 1234567889999999999999999999
Q ss_pred ecCCCcEEEEeCCCcccc--------------ceeee-ccceEEEEE--EeCCCEEEEeeCCCeEEEEecCCCce--e--
Q 047325 261 GSSDGLVNFWEREKQLSH--------------GGVLK-GHKLAVLCL--AAAGKLVFSGSADKTICVWRRDGAIH--T-- 319 (368)
Q Consensus 261 ~~~dg~i~i~d~~~~~~~--------------~~~~~-~~~~~~~~~--~~~~~~l~~~~~dg~i~iw~~~~~~~--~-- 319 (368)
++.|+.|++||....... ..... .|...+.++ ++++..|++++.|+.|++|+.+.... .
T Consensus 212 ~s~D~~v~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~ 291 (345)
T 3fm0_A 212 CSDDRTVRIWRQYLPGNEQGVACSGSDPSWKCICTLSGFHSRTIYDIAWCQLTGALATACGDDAIRVFQEDPNSDPQQPT 291 (345)
T ss_dssp EETTSCEEEEEEECTTCTTCCCCC---CEEEEEEEECSSCSSCEEEEEECTTTCCEEEEETTSCEEEEEECTTSCTTSCC
T ss_pred EeCCCeEEEeccccCCCCccceeeccCCccceeEEecCCCCCcEEEEEEecCCCEEEEEeCCCeEEEEEeCCCCCcceee
Confidence 999999999996422111 01122 266666554 45789999999999999999865321 1
Q ss_pred ---eeEeeeccccCeeEEEEecCCeeeecCCcceEEEEEeeCCcccccccC
Q 047325 320 ---CLSVLTGHTGPVKCLAVEEDRDSSSSTSSCAQRWIVYSGSLDKSDDDV 367 (368)
Q Consensus 320 ---~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~w~l~sg~~D~~v~i~ 367 (368)
......+|...|++++|+|++.. .|++|+.||+|++|
T Consensus 292 ~~~~~~~~~~h~~~V~~v~~~p~~~~-----------~laS~s~Dg~v~~W 331 (345)
T 3fm0_A 292 FSLTAHLHQAHSQDVNCVAWNPKEPG-----------LLASCSDDGEVAFW 331 (345)
T ss_dssp EEEEEEETTSSSSCEEEEEECSSSTT-----------EEEEEETTSCEEEE
T ss_pred EEEEeeecccccCcEeEeEEeCCCce-----------EEEEcCCCCcEEEE
Confidence 12233579999999999999741 57788888888887
No 14
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=100.00 E-value=3.7e-44 Score=324.71 Aligned_cols=319 Identities=17% Similarity=0.208 Sum_probs=238.2
Q ss_pred cCCCceeeeccCcCCcEEEEEecCC--EEEEccCCCcEEEEcCCcc--eeccc-------CCCCCeeEEEEe--CCEEEE
Q 047325 31 LPQNGLIGSLVREEGHIYSLAASKD--LLYTGSDSKNIRVWKNLKE--FCGFK-------ASSGLVKAIVIS--GEKIFT 97 (368)
Q Consensus 31 ~~~~~~~~~~~~h~~~i~~~~~~~~--~l~s~~~dg~i~iw~~~~~--~~~~~-------~~~~~v~~~~~~--~~~l~s 97 (368)
.+..+++.++.+|.+.|.+++|+++ +|++|+.|++|++||..+. ...+. +|.+.|.+++|+ +++|++
T Consensus 177 ~~~~~~~~~l~~H~~~V~~v~fspdg~~las~s~D~~i~lwd~~~g~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~s 256 (611)
T 1nr0_A 177 GPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIAS 256 (611)
T ss_dssp TTTBEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEE
T ss_pred CCCCeEeeeeccccCceEEEEECCCCCEEEEEECCCcEEEEECCCCcEeeeeccccccccccCCCEEEEEECCCCCEEEE
Confidence 3456677889999999999999865 9999999999999997643 33342 799999999998 789999
Q ss_pred EeCCCeEEEEeecCCCccccccCCccccce---------eeeeccCCCC-ceeEecc-cceeeeeecCCCEeEEEEcCCC
Q 047325 98 GHQDGKIRVWKISPKNQSVHKRAGTLPTLK---------DIFKSSIKPS-NYIEVRR-HRTALWIRHSDAVSCMSLDQDC 166 (368)
Q Consensus 98 ~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~-~~~~~~~-~~~~~~~~~~~~v~~~~~~~~~ 166 (368)
++.|++|++||+.+++.............. .+........ .+..... .....+.+|...|++++|+|++
T Consensus 257 ~s~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~spdg 336 (611)
T 1nr0_A 257 ASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPELGSIDQVRYGHNKAITALSSSADG 336 (611)
T ss_dssp EETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEECSSCEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEECTTS
T ss_pred EeCCCeEEEEeCCCCceeeeecCCCCccceeEEEEEcCCEEEEEeCCCcEEEEeCCCCCcceEEcCCCCCEEEEEEeCCC
Confidence 999999999999887654333221100000 0000000000 0011111 1234556899999999999999
Q ss_pred CEEEEEeCCCcEEEEEccCCeEEEEe-e----------------------------------------------------
Q 047325 167 GLLYTASWDRTFKVWRISDSKCLESV-S---------------------------------------------------- 193 (368)
Q Consensus 167 ~~l~~~~~d~~i~iwd~~~~~~~~~~-~---------------------------------------------------- 193 (368)
++|++++.|+.|++||+.+++....+ .
T Consensus 337 ~~l~s~s~D~~v~~Wd~~~~~~~~~~~~~h~~~v~~~~~s~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~ 416 (611)
T 1nr0_A 337 KTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLG 416 (611)
T ss_dssp SEEEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEECTTSCEEEEETTTEEEEECSSSSSSCTTSCCEEECSSCEEE
T ss_pred CEEEEEeCCCcEEEEECCCCceeeecccCCcceEEEEEECCCCcEEEEEcCCceEEeecCCccccccceeeeecCCCCcE
Confidence 99999999999999999876543322 0
Q ss_pred -----------------------------cCCCceEEEEeCCCC-eEEEEcCCCeEEEEEcCCCCCCcccccceeecccc
Q 047325 194 -----------------------------AHDDAVNSVVSSSEG-LIFTGSADGTVKVWKREQHGKGTKHSLAQTLLKQE 243 (368)
Q Consensus 194 -----------------------------~~~~~v~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~ 243 (368)
.|...+.+++|+|++ +|++|+.|+.|++||++... ...... ..|.
T Consensus 417 ~~~s~dg~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~va~spdg~~lasgs~D~~v~lwd~~~~~----~~~~~~-~~h~ 491 (611)
T 1nr0_A 417 LAVSADGDIAVAACYKHIAIYSHGKLTEVPISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGAS----VSEVKT-IVHP 491 (611)
T ss_dssp EEECTTSSCEEEEESSEEEEEETTEEEEEECSSCEEEEEECTTSCEEEEEETTSEEEEEEEETTE----EEEEEE-EECS
T ss_pred EEEeCCCcEEEEEeCceEEEEeCCceeeeecCCCceEEEEeCCCCEEEEeCCCCeEEEEEccCCc----eeeeec-cCCC
Confidence 022346788999999 99999999999999987531 111222 5788
Q ss_pred ccEEEEEEcCCCCEEEEecCCCcEEEEeCCC-ccccce-eeeccceEE--EEEEeCCCEEEEeeCCCeEEEEecCCCcee
Q 047325 244 CAVTALVVSSSRSIVYCGSSDGLVNFWEREK-QLSHGG-VLKGHKLAV--LCLAAAGKLVFSGSADKTICVWRRDGAIHT 319 (368)
Q Consensus 244 ~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~-~~~~~~-~~~~~~~~~--~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~ 319 (368)
..|.+++|+|++++|++++.|+.|++||+.+ .+.... ....|...| ++|+|++++|++|+.|++|++|+++.+...
T Consensus 492 ~~v~~v~fspdg~~las~s~d~~v~~w~~~~~~~~~~~~~~~~H~~~V~~v~fspdg~~lasgs~D~~v~lW~~~~~~~~ 571 (611)
T 1nr0_A 492 AEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPSDH 571 (611)
T ss_dssp SCEEEEEECTTSSEEEEEETTSCEEEEEGGGTTEESCCCCCCCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCTTSC
T ss_pred CceEEEEECCCCCEEEEEcCCCCEEEEEcCCCCceeeeeeeeecccceeEEEECCCCCEEEEEECCCcEEEEECCCcccc
Confidence 9999999999999999999999999999986 433322 233477777 455678999999999999999999876433
Q ss_pred eeEeeecc-ccCeeEEEEecCCeeeecCCcceEEEEEeeCCcccccccC
Q 047325 320 CLSVLTGH-TGPVKCLAVEEDRDSSSSTSSCAQRWIVYSGSLDKSDDDV 367 (368)
Q Consensus 320 ~~~~~~~h-~~~v~~l~~~~~~~~~~~~~~~~~~w~l~sg~~D~~v~i~ 367 (368)
.+..+.+| ...|++++|+|++. |++|+.|++||+|
T Consensus 572 ~~~~~~~h~~~~v~~v~fs~d~~-------------l~s~~~D~~i~lW 607 (611)
T 1nr0_A 572 PIIIKGAHAMSSVNSVIWLNETT-------------IVSAGQDSNIKFW 607 (611)
T ss_dssp CEEETTSSTTSCEEEEEEEETTE-------------EEEEETTSCEEEE
T ss_pred cchhhccCcccCeeEEEEcCCCE-------------EEEecCCCCEEEE
Confidence 33567789 89999999999986 6788889999988
No 15
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=100.00 E-value=6.6e-43 Score=294.70 Aligned_cols=281 Identities=21% Similarity=0.368 Sum_probs=224.4
Q ss_pred CceeeeccCcCCcEEEEEecC---CEEEEccCCCcEEEEcCCc-------ceecccCCCCCeeEEEEe--CCEEEEEeCC
Q 047325 34 NGLIGSLVREEGHIYSLAASK---DLLYTGSDSKNIRVWKNLK-------EFCGFKASSGLVKAIVIS--GEKIFTGHQD 101 (368)
Q Consensus 34 ~~~~~~~~~h~~~i~~~~~~~---~~l~s~~~dg~i~iw~~~~-------~~~~~~~~~~~v~~~~~~--~~~l~s~~~d 101 (368)
..+..+|.||.+.|++|+|+| ++|+|||.||+|+|||+.+ ....+.+|...|.+++|+ +++|++++.|
T Consensus 28 ~~l~~tL~GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~~s~dg~~l~s~~~d 107 (340)
T 4aow_A 28 MTLRGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSGSWD 107 (340)
T ss_dssp EEEEEEECCCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSEEEEEEECCCSSCEEEEEECTTSSEEEEEETT
T ss_pred eEEEEEECCccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccceeeEEEeCCCCCEEEEEECCCCCEEEEEccc
Confidence 356678999999999999984 4899999999999999753 244678999999999998 7899999999
Q ss_pred CeEEEEeecCCCccccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcCCCCEEEEEeCCCcEEEE
Q 047325 102 GKIRVWKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCGLLYTASWDRTFKVW 181 (368)
Q Consensus 102 g~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iw 181 (368)
+.|++|+......... ...+...+..+.+.+++++|++++.|+.+++|
T Consensus 108 ~~i~~~~~~~~~~~~~--------------------------------~~~~~~~~~~~~~~~~~~~l~s~s~d~~~~~~ 155 (340)
T 4aow_A 108 GTLRLWDLTTGTTTRR--------------------------------FVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLW 155 (340)
T ss_dssp SEEEEEETTTTEEEEE--------------------------------EECCSSCEEEEEECTTSSCEEEEETTSCEEEE
T ss_pred ccceEEeecccceeee--------------------------------ecCCCCceeEEEEeecCccceeecCCCeEEEE
Confidence 9999999887653222 22267788899999999999999999999999
Q ss_pred EccCCeE-EEEeecCCCceEEEEeCCCC---eEEEEcCCCeEEEEEcCCCCCCcccccceeeccccccEEEEEEcCCCCE
Q 047325 182 RISDSKC-LESVSAHDDAVNSVVSSSEG---LIFTGSADGTVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSSSRSI 257 (368)
Q Consensus 182 d~~~~~~-~~~~~~~~~~v~~~~~~~~~---~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 257 (368)
|+..... .....+|...+.++++++++ .+++++.|+.|++||++.. .....+.+|...|.+++|+|++++
T Consensus 156 d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~------~~~~~~~~h~~~v~~~~~s~~~~~ 229 (340)
T 4aow_A 156 NTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANC------KLKTNHIGHTGYLNTVTVSPDGSL 229 (340)
T ss_dssp CTTSCEEEEECSSSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTT------EEEEEECCCSSCEEEEEECTTSSE
T ss_pred EeCCCceEEEEeccccCcccceEEccCCCCcEEEEEcCCCEEEEEECCCC------ceeeEecCCCCcEEEEEECCCCCE
Confidence 9976554 34556788999999998876 7889999999999999865 356677889999999999999999
Q ss_pred EEEecCCCcEEEEeCCCccccceeeeccceEEEEEEeCCCEEEEeeCCCeEEEEecCCCceeeeE---------eeeccc
Q 047325 258 VYCGSSDGLVNFWEREKQLSHGGVLKGHKLAVLCLAAAGKLVFSGSADKTICVWRRDGAIHTCLS---------VLTGHT 328 (368)
Q Consensus 258 l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~---------~~~~h~ 328 (368)
|++|+.||.|++||+++................+++|++. +++++.|+.|++||++.. ..+. ...+|.
T Consensus 230 l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~~~~d~~i~iwd~~~~--~~~~~~~~~~~~~~~~~h~ 306 (340)
T 4aow_A 230 CASGGKDGQAMLWDLNEGKHLYTLDGGDIINALCFSPNRY-WLCAATGPSIKIWDLEGK--IIVDELKQEVISTSSKAEP 306 (340)
T ss_dssp EEEEETTCEEEEEETTTTEEEEEEECSSCEEEEEECSSSS-EEEEEETTEEEEEETTTT--EEEEEECCC-------CCC
T ss_pred EEEEeCCCeEEEEEeccCceeeeecCCceEEeeecCCCCc-eeeccCCCEEEEEECCCC--eEEEeccccceeeeccCCC
Confidence 9999999999999999876664333333334455555554 556677999999999765 2222 234688
Q ss_pred cCeeEEEEecCCeeeecCCcceEEEEEeeCCcccccccC
Q 047325 329 GPVKCLAVEEDRDSSSSTSSCAQRWIVYSGSLDKSDDDV 367 (368)
Q Consensus 329 ~~v~~l~~~~~~~~~~~~~~~~~~w~l~sg~~D~~v~i~ 367 (368)
..|++++|+|++++ |++|+.||.|++|
T Consensus 307 ~~v~~l~~s~dg~~------------l~sgs~Dg~v~iW 333 (340)
T 4aow_A 307 PQCTSLAWSADGQT------------LFAGYTDNLVRVW 333 (340)
T ss_dssp CCEEEEEECTTSSE------------EEEEETTSCEEEE
T ss_pred CCEEEEEECCCCCE------------EEEEeCCCEEEEE
Confidence 99999999999994 5555555555555
No 16
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=100.00 E-value=6.3e-43 Score=300.18 Aligned_cols=279 Identities=24% Similarity=0.381 Sum_probs=222.5
Q ss_pred cCcCCcEEEEEecCC--EEEEccCCCcEEEEcCCcc--eecccCC------------------CCCeeEEEEe--CCEEE
Q 047325 41 VREEGHIYSLAASKD--LLYTGSDSKNIRVWKNLKE--FCGFKAS------------------SGLVKAIVIS--GEKIF 96 (368)
Q Consensus 41 ~~h~~~i~~~~~~~~--~l~s~~~dg~i~iw~~~~~--~~~~~~~------------------~~~v~~~~~~--~~~l~ 96 (368)
.+|.+.|.+++|+++ +||+|+ |+++++|++.+. +..+..| ...|.+++|+ +++|+
T Consensus 61 ~~h~~~V~~v~fspdg~~la~g~-~~~v~i~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~ 139 (393)
T 1erj_A 61 LDHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLA 139 (393)
T ss_dssp EECSSCCCEEEECTTSSEEEEEC-BSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTTSSEEE
T ss_pred cCCCCEEEEEEECCCCCEEEEEc-CCcEEEEEecCCCEEEEecCccccccccccccccccCCCceeEEEEEECCCCCEEE
Confidence 369999999999865 888876 789999998643 2233332 2348999998 78999
Q ss_pred EEeCCCeEEEEeecCCCccccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcCCCCEEEEEeCCC
Q 047325 97 TGHQDGKIRVWKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCGLLYTASWDR 176 (368)
Q Consensus 97 s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~ 176 (368)
+|+.||.|++||+++++.. ..+.+|...|.+++|+|++++|++++.|+
T Consensus 140 s~~~d~~i~iwd~~~~~~~--------------------------------~~~~~h~~~v~~~~~~p~~~~l~s~s~d~ 187 (393)
T 1erj_A 140 TGAEDRLIRIWDIENRKIV--------------------------------MILQGHEQDIYSLDYFPSGDKLVSGSGDR 187 (393)
T ss_dssp EEETTSCEEEEETTTTEEE--------------------------------EEECCCSSCEEEEEECTTSSEEEEEETTS
T ss_pred EEcCCCeEEEEECCCCcEE--------------------------------EEEccCCCCEEEEEEcCCCCEEEEecCCC
Confidence 9999999999999876532 23345999999999999999999999999
Q ss_pred cEEEEEccCCeEEEEeecCCCceEEEEeCC-CC-eEEEEcCCCeEEEEEcCCCCCCcccc-cceeeccccccEEEEEEcC
Q 047325 177 TFKVWRISDSKCLESVSAHDDAVNSVVSSS-EG-LIFTGSADGTVKVWKREQHGKGTKHS-LAQTLLKQECAVTALVVSS 253 (368)
Q Consensus 177 ~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~-~~-~l~~~~~dg~i~i~d~~~~~~~~~~~-~~~~~~~~~~~i~~~~~~~ 253 (368)
.|++||+++++....+. +...+.+++++| ++ ++++|+.|+.|++||++......... ......+|...|.+++|+|
T Consensus 188 ~v~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~ 266 (393)
T 1erj_A 188 TVRIWDLRTGQCSLTLS-IEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTR 266 (393)
T ss_dssp EEEEEETTTTEEEEEEE-CSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECT
T ss_pred cEEEEECCCCeeEEEEE-cCCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECC
Confidence 99999999999888776 567799999998 66 99999999999999998653210000 0011256889999999999
Q ss_pred CCCEEEEecCCCcEEEEeCCCccc-----------cceeeeccceEEEEE--EeCCCEEEEeeCCCeEEEEecCCCceee
Q 047325 254 SRSIVYCGSSDGLVNFWEREKQLS-----------HGGVLKGHKLAVLCL--AAAGKLVFSGSADKTICVWRRDGAIHTC 320 (368)
Q Consensus 254 ~~~~l~~~~~dg~i~i~d~~~~~~-----------~~~~~~~~~~~~~~~--~~~~~~l~~~~~dg~i~iw~~~~~~~~~ 320 (368)
++++|++|+.|+.|++||+++... ....+.+|...+.++ ++++.+|++|+.||.|++||+.++ .+
T Consensus 267 ~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~iwd~~~~--~~ 344 (393)
T 1erj_A 267 DGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSG--NP 344 (393)
T ss_dssp TSSEEEEEETTSEEEEEEC---------------CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTC--CE
T ss_pred CCCEEEEEeCCCEEEEEECCCCCCcccccCCCCCcceEEEecccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCC--eE
Confidence 999999999999999999875322 123456777777555 457999999999999999998876 67
Q ss_pred eEeeeccccCeeEEEEec------CCeeeecCCcceEEEEEeeCCcccccccC
Q 047325 321 LSVLTGHTGPVKCLAVEE------DRDSSSSTSSCAQRWIVYSGSLDKSDDDV 367 (368)
Q Consensus 321 ~~~~~~h~~~v~~l~~~~------~~~~~~~~~~~~~~w~l~sg~~D~~v~i~ 367 (368)
+..+.+|...|.+++|++ ++. .|+||+.||+||+|
T Consensus 345 ~~~l~~h~~~v~~v~~~~~~~~~p~~~------------~l~sgs~Dg~i~iW 385 (393)
T 1erj_A 345 LLMLQGHRNSVISVAVANGSSLGPEYN------------VFATGSGDCKARIW 385 (393)
T ss_dssp EEEEECCSSCEEEEEECSSCTTCTTCE------------EEEEEETTSEEEEE
T ss_pred EEEECCCCCCEEEEEecCCcCcCCCCC------------EEEEECCCCcEEEC
Confidence 788899999999999986 566 68899999999988
No 17
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=100.00 E-value=6.3e-43 Score=315.61 Aligned_cols=278 Identities=27% Similarity=0.434 Sum_probs=241.3
Q ss_pred CCceeeeccCcCCcEEEEEecCC--EEEEccCCCcEEEEcCCc-ceecccCCCCCeeEEEEe--CCEEEEEeCCCeEEEE
Q 047325 33 QNGLIGSLVREEGHIYSLAASKD--LLYTGSDSKNIRVWKNLK-EFCGFKASSGLVKAIVIS--GEKIFTGHQDGKIRVW 107 (368)
Q Consensus 33 ~~~~~~~~~~h~~~i~~~~~~~~--~l~s~~~dg~i~iw~~~~-~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~vw 107 (368)
..+.+..+.+|.+.|.+++|+++ +|++++.||+|++||... .+..+..|...|.+++|+ +++|++++.||.|++|
T Consensus 292 ~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~~~d~~i~~w~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~~~ 371 (577)
T 2ymu_A 292 NGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQHLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLW 371 (577)
T ss_dssp TSCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTSCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEE
T ss_pred CCcEEEEEecCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCeeEEEeCCCCCEEEEEECCCCCEEEEEeCCCEEEEE
Confidence 45667788999999999999865 999999999999999864 456788999999999998 7899999999999999
Q ss_pred eecCCCccccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcCCCCEEEEEeCCCcEEEEEccCCe
Q 047325 108 KISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCGLLYTASWDRTFKVWRISDSK 187 (368)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~ 187 (368)
|... +. ...+.+|...|++++|+|++++|++++.|+.|++||. +++
T Consensus 372 ~~~~-~~--------------------------------~~~~~~~~~~v~~~~~s~dg~~l~~~~~d~~v~~~~~-~~~ 417 (577)
T 2ymu_A 372 NRNG-QL--------------------------------LQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQ 417 (577)
T ss_dssp ETTC-CE--------------------------------EEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECT-TCC
T ss_pred cCCC-CE--------------------------------EEEecCCCCCeEEEEECCCCCEEEEEeCCCEEEEEeC-CCC
Confidence 9542 21 1223458999999999999999999999999999995 678
Q ss_pred EEEEeecCCCceEEEEeCCCC-eEEEEcCCCeEEEEEcCCCCCCcccccceeeccccccEEEEEEcCCCCEEEEecCCCc
Q 047325 188 CLESVSAHDDAVNSVVSSSEG-LIFTGSADGTVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSSSRSIVYCGSSDGL 266 (368)
Q Consensus 188 ~~~~~~~~~~~v~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~ 266 (368)
.+..+.+|...|.+++|+|++ +|++++.|+.|++||.... ....+.+|...|.+++|+|++++|++++.|+.
T Consensus 418 ~~~~~~~~~~~v~~~~~s~d~~~l~~~~~d~~v~~w~~~~~-------~~~~~~~~~~~v~~~~~spd~~~las~~~d~~ 490 (577)
T 2ymu_A 418 LLQTLTGHSSSVWGVAFSPDDQTIASASDDKTVKLWNRNGQ-------LLQTLTGHSSSVRGVAFSPDGQTIASASDDKT 490 (577)
T ss_dssp EEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTSC-------EEEEEECCSSCEEEEEECTTSCEEEEEETTSE
T ss_pred EEEEecCCCCCeEEEEECCCCCEEEEEcCCCEEEEEECCCC-------EEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCE
Confidence 888999999999999999999 9999999999999997532 45677889999999999999999999999999
Q ss_pred EEEEeCCCccccceeeeccceEEE--EEEeCCCEEEEeeCCCeEEEEecCCCceeeeEeeeccccCeeEEEEecCCeeee
Q 047325 267 VNFWEREKQLSHGGVLKGHKLAVL--CLAAAGKLVFSGSADKTICVWRRDGAIHTCLSVLTGHTGPVKCLAVEEDRDSSS 344 (368)
Q Consensus 267 i~i~d~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~ 344 (368)
|++||... +. ...+.+|...+. +++|++++|++++.||.|++||... +++..+.+|.++|++++|+||++
T Consensus 491 i~iw~~~~-~~-~~~~~~h~~~v~~l~~s~dg~~l~s~~~dg~v~lwd~~~---~~~~~~~~h~~~v~~~~fs~dg~--- 562 (577)
T 2ymu_A 491 VKLWNRNG-QL-LQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNG---QLLQTLTGHSSSVWGVAFSPDGQ--- 562 (577)
T ss_dssp EEEEETTS-CE-EEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECTTS---CEEEEEECCSSCEEEEEECTTSS---
T ss_pred EEEEcCCC-CE-EEEEeCCCCCEEEEEEcCCCCEEEEEECcCEEEEEeCCC---CEEEEEcCCCCCEEEEEEcCCCC---
Confidence 99999653 33 356778887775 4567899999999999999998643 67788999999999999999999
Q ss_pred cCCcceEEEEEeeCCcccccccCC
Q 047325 345 STSSCAQRWIVYSGSLDKSDDDVH 368 (368)
Q Consensus 345 ~~~~~~~~w~l~sg~~D~~v~i~h 368 (368)
.|+|++.|++|++|+
T Consensus 563 ---------~l~s~~~D~~i~~Wd 577 (577)
T 2ymu_A 563 ---------TIASASSDKTVKLWN 577 (577)
T ss_dssp ---------CEEEEETTSCEEEEC
T ss_pred ---------EEEEEeCCCEEEEeC
Confidence 788999999999995
No 18
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=100.00 E-value=8.5e-43 Score=315.79 Aligned_cols=285 Identities=15% Similarity=0.164 Sum_probs=234.5
Q ss_pred cccCCCceeeeccCcCCcEEEEEecCC--EEEEccCCCcEEEEcCCcc----eecccCCCCCeeEEEEe--CCEEEEEeC
Q 047325 29 ENLPQNGLIGSLVREEGHIYSLAASKD--LLYTGSDSKNIRVWKNLKE----FCGFKASSGLVKAIVIS--GEKIFTGHQ 100 (368)
Q Consensus 29 ~~~~~~~~~~~~~~h~~~i~~~~~~~~--~l~s~~~dg~i~iw~~~~~----~~~~~~~~~~v~~~~~~--~~~l~s~~~ 100 (368)
.++........+.+|.+.|++++|+++ +||+|+.||+|+|||+... ...+.+|.+.|.+++|+ +++|++++.
T Consensus 44 ~~~~~~~~~~~~~~h~~~v~~~~~spdg~~lasg~~d~~v~lWd~~~~~~~~~~~~~~~~~~v~~v~fs~dg~~l~~~~~ 123 (611)
T 1nr0_A 44 VPVGSLTDTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGE 123 (611)
T ss_dssp EETTCSSCCEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTTCCEEEEEECSSSCEEEEEECTTSCEEEEEEC
T ss_pred ecCCCcccCeEecCCCCceEEEEECCCCcEEEEEeCCCCEEEeECCCCcceeeEeecccCCceEEEEECCCCCEEEEEEC
Confidence 344556777889999999999999865 9999999999999998532 34678899999999999 778988886
Q ss_pred C----CeEEEEeecCCCccccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcCCCC-EEEEEeCC
Q 047325 101 D----GKIRVWKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCG-LLYTASWD 175 (368)
Q Consensus 101 d----g~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~d 175 (368)
+ +.|++||. ++... .+.+|...|++++|+|++. .|++++.|
T Consensus 124 ~~~~~~~v~~wd~--~~~~~--------------------------------~l~gh~~~v~~v~f~p~~~~~l~s~s~D 169 (611)
T 1nr0_A 124 GRERFGHVFLFDT--GTSNG--------------------------------NLTGQARAMNSVDFKPSRPFRIISGSDD 169 (611)
T ss_dssp CSSCSEEEEETTT--CCBCB--------------------------------CCCCCSSCEEEEEECSSSSCEEEEEETT
T ss_pred CCCceeEEEEeeC--CCCcc--------------------------------eecCCCCCceEEEECCCCCeEEEEEeCC
Confidence 5 47888874 22111 1234999999999999986 69999999
Q ss_pred CcEEEEEccCCeEEEEeecCCCceEEEEeCCCC-eEEEEcCCCeEEEEEcCCCCCCcccccceee-------ccccccEE
Q 047325 176 RTFKVWRISDSKCLESVSAHDDAVNSVVSSSEG-LIFTGSADGTVKVWKREQHGKGTKHSLAQTL-------LKQECAVT 247 (368)
Q Consensus 176 ~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~-------~~~~~~i~ 247 (368)
++|++||..+++.+..+.+|...|.+++|+|++ +|++++.|+.|++||++.+.. ...+ .+|...|.
T Consensus 170 ~~v~lwd~~~~~~~~~l~~H~~~V~~v~fspdg~~las~s~D~~i~lwd~~~g~~------~~~~~~~~~~~~~h~~~V~ 243 (611)
T 1nr0_A 170 NTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTK------TGVFEDDSLKNVAHSGSVF 243 (611)
T ss_dssp SCEEEEETTTBEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCE------EEECBCTTSSSCSSSSCEE
T ss_pred CeEEEEECCCCeEeeeeccccCceEEEEECCCCCEEEEEECCCcEEEEECCCCcE------eeeeccccccccccCCCEE
Confidence 999999999999999999999999999999999 999999999999999876532 2222 26899999
Q ss_pred EEEEcCCCCEEEEecCCCcEEEEeCCCccccceeee--ccceEEEEEEeCCCEEEEeeCCCeEEEEecCCCceeeeEeee
Q 047325 248 ALVVSSSRSIVYCGSSDGLVNFWEREKQLSHGGVLK--GHKLAVLCLAAAGKLVFSGSADKTICVWRRDGAIHTCLSVLT 325 (368)
Q Consensus 248 ~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~ 325 (368)
+++|+|++++|++++.|++|++||+++++....... .+......+.++++.+++++.||.+++|+.... .....+.
T Consensus 244 ~v~~spdg~~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~~~~~~~~--~~~~~~~ 321 (611)
T 1nr0_A 244 GLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPELG--SIDQVRY 321 (611)
T ss_dssp EEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEECSSCEEEEETTCCEEEEETTTT--EEEEEEC
T ss_pred EEEECCCCCEEEEEeCCCeEEEEeCCCCceeeeecCCCCccceeEEEEEcCCEEEEEeCCCcEEEEeCCCC--CcceEEc
Confidence 999999999999999999999999997765433221 233445667779999999999999999998776 5667788
Q ss_pred ccccCeeEEEEecCCeeeecCCcceEEEEEeeCCcccccccC
Q 047325 326 GHTGPVKCLAVEEDRDSSSSTSSCAQRWIVYSGSLDKSDDDV 367 (368)
Q Consensus 326 ~h~~~v~~l~~~~~~~~~~~~~~~~~~w~l~sg~~D~~v~i~ 367 (368)
+|...|++++|+|+++ .|++++.|++|++|
T Consensus 322 gh~~~v~~l~~spdg~------------~l~s~s~D~~v~~W 351 (611)
T 1nr0_A 322 GHNKAITALSSSADGK------------TLFSADAEGHINSW 351 (611)
T ss_dssp CCSSCEEEEEECTTSS------------EEEEEETTSCEEEE
T ss_pred CCCCCEEEEEEeCCCC------------EEEEEeCCCcEEEE
Confidence 9999999999999999 45555666666555
No 19
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=100.00 E-value=4.2e-43 Score=290.79 Aligned_cols=242 Identities=21% Similarity=0.275 Sum_probs=207.9
Q ss_pred eecccCCCCCeeEEEEe--CCEEEEEeCCCeEEEEeecCCCccccccCCccccceeeeeccCCCCceeEecccceeeeee
Q 047325 75 FCGFKASSGLVKAIVIS--GEKIFTGHQDGKIRVWKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIR 152 (368)
Q Consensus 75 ~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (368)
...+.+|...|.+++|+ +.+|++++.||+|++||++++.... .+..
T Consensus 6 ~~~~~~h~~~V~~~~fsp~~~~l~s~~~dg~v~lWd~~~~~~~~--------------------------------~~~~ 53 (304)
T 2ynn_A 6 KKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVR--------------------------------SIQV 53 (304)
T ss_dssp EEEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEE--------------------------------EEEC
T ss_pred EEeecCCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCceeE--------------------------------Eeec
Confidence 45688999999999998 7899999999999999998765322 2334
Q ss_pred cCCCEeEEEEcCCCCEEEEEeCCCcEEEEEccCCeEEEEeecCCCceEEEEeCCCC-eEEEEcCCCeEEEEEcCCCCCCc
Q 047325 153 HSDAVSCMSLDQDCGLLYTASWDRTFKVWRISDSKCLESVSAHDDAVNSVVSSSEG-LIFTGSADGTVKVWKREQHGKGT 231 (368)
Q Consensus 153 ~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~ 231 (368)
|..+|.+++|+|++++|++|+.|+.|++||+.+++.+..+.+|...|.+++|+|++ +|++|+.|+.|++||++...
T Consensus 54 ~~~~v~~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~--- 130 (304)
T 2ynn_A 54 TETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNW--- 130 (304)
T ss_dssp CSSCEEEEEEEGGGTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEEGGGTT---
T ss_pred cCCcEEEEEEeCCCCEEEEECCCCEEEEEECCCCcEEEEEeCCCCcEEEEEEcCCCCEEEEECCCCeEEEEECCCCc---
Confidence 88999999999999999999999999999999999999999999999999999999 99999999999999997542
Q ss_pred ccccceeeccccccEEEEEEcC-CCCEEEEecCCCcEEEEeCCCccccceeeeccceEE--EEEEe--CCCEEEEeeCCC
Q 047325 232 KHSLAQTLLKQECAVTALVVSS-SRSIVYCGSSDGLVNFWEREKQLSHGGVLKGHKLAV--LCLAA--AGKLVFSGSADK 306 (368)
Q Consensus 232 ~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~--~~~~~--~~~~l~~~~~dg 306 (368)
.....+.+|...|.+++|+| ++.+|++|+.|+.|++||+++.........+|...+ .++.+ ++.+|++|+.|+
T Consensus 131 --~~~~~~~~h~~~v~~v~~~p~~~~~l~sgs~D~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~D~ 208 (304)
T 2ynn_A 131 --ALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDL 208 (304)
T ss_dssp --EEEEEECCCCSCEEEEEECTTCTTEEEEEETTSEEEEEETTCSSCSEEEECCCTTCEEEEEECCSTTCCEEEEEETTS
T ss_pred --chhhhhcccCCcEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCccceeccCCcCcEEEEEEEEcCCCCEEEEEcCCC
Confidence 24456788999999999999 678999999999999999987665544444554444 44544 678999999999
Q ss_pred eEEEEecCCCceeeeEeeeccccCeeEEEEecCCeeeecCCcceEEEEEeeCCcccccccC
Q 047325 307 TICVWRRDGAIHTCLSVLTGHTGPVKCLAVEEDRDSSSSTSSCAQRWIVYSGSLDKSDDDV 367 (368)
Q Consensus 307 ~i~iw~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~w~l~sg~~D~~v~i~ 367 (368)
+|++||+++. .++..+.+|...|++++|+|++. .|++|+.||+||+|
T Consensus 209 ~i~iWd~~~~--~~~~~~~~h~~~v~~~~~~p~~~------------~l~s~s~Dg~i~iW 255 (304)
T 2ynn_A 209 TIKIWDYQTK--SCVATLEGHMSNVSFAVFHPTLP------------IIISGSEDGTLKIW 255 (304)
T ss_dssp EEEEEETTTT--EEEEEEECCSSCEEEEEECSSSS------------EEEEEETTSCEEEE
T ss_pred eEEEEeCCCC--ccceeeCCCCCCEEEEEECCCCC------------EEEEEcCCCeEEEE
Confidence 9999999876 77889999999999999999999 56666666666666
No 20
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.6e-42 Score=293.36 Aligned_cols=294 Identities=14% Similarity=0.175 Sum_probs=242.6
Q ss_pred CCccccccccCCCceeeeccCcCCcEEEEEecCC--EEEEccCCCcEEEEcCCc--ceecccCCCCCeeEEEEe--CCEE
Q 047325 22 PGWSQFEENLPQNGLIGSLVREEGHIYSLAASKD--LLYTGSDSKNIRVWKNLK--EFCGFKASSGLVKAIVIS--GEKI 95 (368)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~--~l~s~~~dg~i~iw~~~~--~~~~~~~~~~~v~~~~~~--~~~l 95 (368)
+.+....+..-.......+.+|.+.|++++|+++ +|++|+.||.|++||+.+ ....+..|...|.+++|+ +++|
T Consensus 10 ~~~~~~~~~~G~~~~~~~l~~h~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l 89 (369)
T 3zwl_B 10 HSSGENLYFQGSHMKAIKLTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLGTLDGHTGTIWSIDVDCFTKYC 89 (369)
T ss_dssp ---CCCCCSSCCSEEEEEEECCSSCEEEEEECTTSCEEEEEESSSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEE
T ss_pred ccCCcceEEeccccccEEEEEeeceEEEEEEcCCCCEEEEEeCCCEEEEEeCCCchhhhhhhhcCCcEEEEEEcCCCCEE
Confidence 3334334444444555679999999999999755 999999999999999764 466788999999999998 7899
Q ss_pred EEEeCCCeEEEEeecCCCccccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcCCCCEEEEEeCC
Q 047325 96 FTGHQDGKIRVWKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCGLLYTASWD 175 (368)
Q Consensus 96 ~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d 175 (368)
++++.||.|++||+.+++..... .+...|.+++|+|+++++++++.+
T Consensus 90 ~s~~~dg~i~iwd~~~~~~~~~~---------------------------------~~~~~v~~~~~~~~~~~l~~~~~~ 136 (369)
T 3zwl_B 90 VTGSADYSIKLWDVSNGQCVATW---------------------------------KSPVPVKRVEFSPCGNYFLAILDN 136 (369)
T ss_dssp EEEETTTEEEEEETTTCCEEEEE---------------------------------ECSSCEEEEEECTTSSEEEEEECC
T ss_pred EEEeCCCeEEEEECCCCcEEEEe---------------------------------ecCCCeEEEEEccCCCEEEEecCC
Confidence 99999999999999877532221 177889999999999999999999
Q ss_pred -----CcEEEEEccCCe-----------EEEEeecCCC--ceEEEEeCCCC-eEEEEcCCCeEEEEEcCCCCCCcccccc
Q 047325 176 -----RTFKVWRISDSK-----------CLESVSAHDD--AVNSVVSSSEG-LIFTGSADGTVKVWKREQHGKGTKHSLA 236 (368)
Q Consensus 176 -----~~i~iwd~~~~~-----------~~~~~~~~~~--~v~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~ 236 (368)
+.|++||+..+. .+..+..|.. .+.+++|+|++ .+++++.||.|++||++... ...
T Consensus 137 ~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~-----~~~ 211 (369)
T 3zwl_B 137 VMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGLDAATVAGWSTKGKYIIAGHKDGKISKYDVSNNY-----EYV 211 (369)
T ss_dssp BTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTTCCCEEEEEECGGGCEEEEEETTSEEEEEETTTTT-----EEE
T ss_pred ccCCCCEEEEEEecCCccceeecccccceeeeccCCcCccceeEEEEcCCCCEEEEEcCCCEEEEEECCCCc-----EeE
Confidence 999999997653 3444555665 89999999999 99999999999999998632 356
Q ss_pred eeeccccccEEEEEEcCCCCEEEEecCCCcEEEEeCCCccccceeeeccceEEEEEEeCCCEEEEeeCCC----------
Q 047325 237 QTLLKQECAVTALVVSSSRSIVYCGSSDGLVNFWEREKQLSHGGVLKGHKLAVLCLAAAGKLVFSGSADK---------- 306 (368)
Q Consensus 237 ~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg---------- 306 (368)
..+..|...|.+++|+|++++|++++.||.|++||+++................+++|+++++++++.++
T Consensus 212 ~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 291 (369)
T 3zwl_B 212 DSIDLHEKSISDMQFSPDLTYFITSSRDTNSFLVDVSTLQVLKKYETDCPLNTAVITPLKEFIILGGGQEAKDVTTTSAN 291 (369)
T ss_dssp EEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSCEEEEEECSSSSEEEEEECCC----------
T ss_pred EEEecCCCceeEEEECCCCCEEEEecCCceEEEEECCCCceeeeecCCCCceeEEecCCCceEEEeecCCCceEEEEecC
Confidence 6777889999999999999999999999999999999876664444444555577788999999999988
Q ss_pred ----eEEEEecCCCceeeeEeeeccccCeeEEEEecCCeeeecCCcceEEEEEeeCCcccccccC
Q 047325 307 ----TICVWRRDGAIHTCLSVLTGHTGPVKCLAVEEDRDSSSSTSSCAQRWIVYSGSLDKSDDDV 367 (368)
Q Consensus 307 ----~i~iw~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~w~l~sg~~D~~v~i~ 367 (368)
.+++||+... +.+..+.+|...|++++|+|+++ .|++|+.||.|++|
T Consensus 292 ~~~~~i~~~d~~~~--~~~~~~~~~~~~v~~~~~s~~~~------------~l~s~~~dg~v~iw 342 (369)
T 3zwl_B 292 EGKFEARFYHKIFE--EEIGRVQGHFGPLNTVAISPQGT------------SYASGGEDGFIRLH 342 (369)
T ss_dssp ---CEEEEEETTTC--CEEEEEECCSSCEEEEEECTTSS------------EEEEEETTSEEEEE
T ss_pred CCcceeEEEecCCC--cchhheecccCcEEEEEECCCCC------------EEEEEcCCCeEEEE
Confidence 8999998876 67788899999999999999999 67777777777776
No 21
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=100.00 E-value=1.9e-42 Score=318.36 Aligned_cols=280 Identities=23% Similarity=0.358 Sum_probs=229.2
Q ss_pred ceeeeccCcCCcEEEEEecC---CEEEEccCCCcEEEEcCCcc-------eecccCCCCCeeEEEEe--CCEEEEEeCCC
Q 047325 35 GLIGSLVREEGHIYSLAASK---DLLYTGSDSKNIRVWKNLKE-------FCGFKASSGLVKAIVIS--GEKIFTGHQDG 102 (368)
Q Consensus 35 ~~~~~~~~h~~~i~~~~~~~---~~l~s~~~dg~i~iw~~~~~-------~~~~~~~~~~v~~~~~~--~~~l~s~~~dg 102 (368)
.....+.+|.+.|+++++++ ++|+||+.||+|++||+... ...+.+|...|.+++|+ +++|++|+.||
T Consensus 373 ~~~~~l~~H~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~sgs~Dg 452 (694)
T 3dm0_A 373 VLKGTMRAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDGQFALSGSWDG 452 (694)
T ss_dssp EEEEEEECCSSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTCSCEEEEEEECCSSCEEEEEECTTSSEEEEEETTS
T ss_pred chhhhcccCCceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCcccccccceecCCCCcEEEEEECCCCCEEEEEeCCC
Confidence 34457899999999999974 48999999999999997632 34678999999999998 78999999999
Q ss_pred eEEEEeecCCCccccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcCCCCEEEEEeCCCcEEEEE
Q 047325 103 KIRVWKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCGLLYTASWDRTFKVWR 182 (368)
Q Consensus 103 ~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd 182 (368)
+|++||+.++... ..+.+|...|.+++|+|++++|++++.|++|++||
T Consensus 453 ~v~vwd~~~~~~~--------------------------------~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iwd 500 (694)
T 3dm0_A 453 ELRLWDLAAGVST--------------------------------RRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWN 500 (694)
T ss_dssp EEEEEETTTTEEE--------------------------------EEEECCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred cEEEEECCCCcce--------------------------------eEEeCCCCCEEEEEEeCCCCEEEEEeCCCEEEEEE
Confidence 9999999876432 23455999999999999999999999999999999
Q ss_pred ccCCeEEEEe---ecCCCceEEEEeCCCC---eEEEEcCCCeEEEEEcCCCCCCcccccceeeccccccEEEEEEcCCCC
Q 047325 183 ISDSKCLESV---SAHDDAVNSVVSSSEG---LIFTGSADGTVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSSSRS 256 (368)
Q Consensus 183 ~~~~~~~~~~---~~~~~~v~~~~~~~~~---~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 256 (368)
+......... .+|...|.+++|+|++ .+++++.|+.|++||++.. .....+.+|...|.+++|+|+++
T Consensus 501 ~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~vwd~~~~------~~~~~~~~h~~~v~~v~~spdg~ 574 (694)
T 3dm0_A 501 TLGECKYTISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNC------KLRSTLAGHTGYVSTVAVSPDGS 574 (694)
T ss_dssp TTSCEEEEECSSTTSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTC------CEEEEECCCSSCEEEEEECTTSS
T ss_pred CCCCcceeeccCCCCCCCcEEEEEEeCCCCcceEEEEeCCCeEEEEECCCC------cEEEEEcCCCCCEEEEEEeCCCC
Confidence 8655443332 3688899999999986 7999999999999999865 34567788999999999999999
Q ss_pred EEEEecCCCcEEEEeCCCccccceeeeccceEEEEEEeCCCEEEEeeCCCeEEEEecCCCceeeeEeeecc---------
Q 047325 257 IVYCGSSDGLVNFWEREKQLSHGGVLKGHKLAVLCLAAAGKLVFSGSADKTICVWRRDGAIHTCLSVLTGH--------- 327 (368)
Q Consensus 257 ~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h--------- 327 (368)
+|++|+.||.|++||+++++.............++++|++.+|++++ |+.|++||+.+. ..+..+..+
T Consensus 575 ~l~sg~~Dg~i~iwd~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~-~~~i~iwd~~~~--~~~~~~~~~~~~~~~~~~ 651 (694)
T 3dm0_A 575 LCASGGKDGVVLLWDLAEGKKLYSLEANSVIHALCFSPNRYWLCAAT-EHGIKIWDLESK--SIVEDLKVDLKAEAEKAD 651 (694)
T ss_dssp EEEEEETTSBCEEEETTTTEEEECCBCSSCEEEEEECSSSSEEEEEE-TTEEEEEETTTT--EEEEEECCCCC-------
T ss_pred EEEEEeCCCeEEEEECCCCceEEEecCCCcEEEEEEcCCCcEEEEEc-CCCEEEEECCCC--CChhhhcccccccccccc
Confidence 99999999999999999876654333333444567778888887765 566999999876 444433321
Q ss_pred ----------ccCeeEEEEecCCeeeecCCcceEEEEEeeCCcccccccC
Q 047325 328 ----------TGPVKCLAVEEDRDSSSSTSSCAQRWIVYSGSLDKSDDDV 367 (368)
Q Consensus 328 ----------~~~v~~l~~~~~~~~~~~~~~~~~~w~l~sg~~D~~v~i~ 367 (368)
...+++++|+|++. .|++|+.||+||+|
T Consensus 652 ~~~~~~~~~~~~~~~~l~~spdg~------------~l~sgs~Dg~i~iW 689 (694)
T 3dm0_A 652 NSGPAATKRKVIYCTSLNWSADGS------------TLFSGYTDGVIRVW 689 (694)
T ss_dssp ---------CCCCEEEEEECTTSS------------EEEEEETTSEEEEE
T ss_pred ccccccCCceeEEeeeEEEcCCCC------------EEEEEcCCCeEEEE
Confidence 12378999999999 78899999999998
No 22
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=100.00 E-value=2.1e-42 Score=297.93 Aligned_cols=294 Identities=15% Similarity=0.159 Sum_probs=237.0
Q ss_pred eeeeccCcCCcEEEEEecCCEEEEccCCCcEEEEcCCc--------ceecccCCCCCeeEEEEe------C---CEEEEE
Q 047325 36 LIGSLVREEGHIYSLAASKDLLYTGSDSKNIRVWKNLK--------EFCGFKASSGLVKAIVIS------G---EKIFTG 98 (368)
Q Consensus 36 ~~~~~~~h~~~i~~~~~~~~~l~s~~~dg~i~iw~~~~--------~~~~~~~~~~~v~~~~~~------~---~~l~s~ 98 (368)
....+.+|.+.|++++|++++|++|+.||.|++||+.. ....+..|...|.+++|+ + ++|+++
T Consensus 8 ~~~~~~~h~~~i~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~g~~~~~l~s~ 87 (397)
T 1sq9_A 8 TANAGKAHDADIFSVSACNSFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVATT 87 (397)
T ss_dssp EEEESSCSSSCEEEEEECSSEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEEEE
T ss_pred hhhhhhhhhcCeEEEEecCCeEEEEcCCCEEEEEECCCcccccCCCcceEEecCCCcEEEEEEecccccCCccccEEEEE
Confidence 45678899999999999999999999999999999864 356678999999999997 4 689999
Q ss_pred eCCCeEEEEeecCCCccccccCCccccceeeeeccCCCCceeEecccceeeeeec-----CCCEeEEEEc----CCCCE-
Q 047325 99 HQDGKIRVWKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRH-----SDAVSCMSLD----QDCGL- 168 (368)
Q Consensus 99 ~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~v~~~~~~----~~~~~- 168 (368)
+.||.|++||+.+++..... ....+..| ...|.+++|+ |++++
T Consensus 88 ~~dg~i~iw~~~~~~~~~~~---------------------------~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 140 (397)
T 1sq9_A 88 SFSGDLLFYRITREDETKKV---------------------------IFEKLDLLDSDMKKHSFWALKWGASNDRLLSHR 140 (397)
T ss_dssp ETTSCEEEEEEEECTTTCCE---------------------------EEEEECCSCTTGGGSCEEEEEEECCC----CEE
T ss_pred cCCCCEEEEEccCCcccccc---------------------------cceeecccccccCCCcEEEEEEeeccCCCCceE
Confidence 99999999999877631100 01122235 5899999999 99999
Q ss_pred EEEEeCCCcEEEEEccC------CeEEE-----Eee-------cCCCceEEEEeCCCCeEEEEcCCCeEEEEEcCCCCCC
Q 047325 169 LYTASWDRTFKVWRISD------SKCLE-----SVS-------AHDDAVNSVVSSSEGLIFTGSADGTVKVWKREQHGKG 230 (368)
Q Consensus 169 l~~~~~d~~i~iwd~~~------~~~~~-----~~~-------~~~~~v~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~ 230 (368)
|++++.||.|++||+.+ ++.+. .+. .|...|.+++|+|++.+++++.|+.|++||++..
T Consensus 141 l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~dg~i~i~d~~~~--- 217 (397)
T 1sq9_A 141 LVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERGLIATGFNNGTVQISELSTL--- 217 (397)
T ss_dssp EEEEETTSCEEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTSEEEEECTTSEEEEEETTTT---
T ss_pred EEEEeCCCcEEEEeCCccccccccceeeccCcceeeeeeccccCCCCCceEEEECCCceEEEEeCCCcEEEEECCCC---
Confidence 99999999999999998 66655 664 4888999999999888889999999999999865
Q ss_pred cccccceeecc---c---cccEEEEEEcCCCCEEEEecCC---CcEEEEeCCCccccceeeec-------------cceE
Q 047325 231 TKHSLAQTLLK---Q---ECAVTALVVSSSRSIVYCGSSD---GLVNFWEREKQLSHGGVLKG-------------HKLA 288 (368)
Q Consensus 231 ~~~~~~~~~~~---~---~~~i~~~~~~~~~~~l~~~~~d---g~i~i~d~~~~~~~~~~~~~-------------~~~~ 288 (368)
.....+.. | ...|.+++|+|++++|++++.| |.|++||+++.... ..+.. |...
T Consensus 218 ---~~~~~~~~~~~h~~~~~~i~~i~~~~~~~~l~~~~~d~~~g~i~i~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 293 (397)
T 1sq9_A 218 ---RPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERI-GSLSVPTHSSQASLGEFAHSSW 293 (397)
T ss_dssp ---EEEEEEECCC---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTCCEE-EEECBC--------CCBSBSSC
T ss_pred ---ceeEEEeccccccccCCccceEEECCCCCEEEEEecCCCCceEEEEECCCCccc-ceeccCcccccccccccccCCc
Confidence 34555666 7 8899999999999999999999 99999999987554 44555 7777
Q ss_pred EEE--EEeCCCEEEEeeCCCeEEEEecCCCceeeeEeee------cc---------------ccCeeEEEEecCCeeeec
Q 047325 289 VLC--LAAAGKLVFSGSADKTICVWRRDGAIHTCLSVLT------GH---------------TGPVKCLAVEEDRDSSSS 345 (368)
Q Consensus 289 ~~~--~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~------~h---------------~~~v~~l~~~~~~~~~~~ 345 (368)
+.+ ++|++++|++++.||.|++||+... +.+..+. +| ..+|++++|+|++..++.
T Consensus 294 v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~--~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~g~~~~~ 371 (397)
T 1sq9_A 294 VMSLSFNDSGETLCSAGWDGKLRFWDVKTK--ERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGM 371 (397)
T ss_dssp EEEEEECSSSSEEEEEETTSEEEEEETTTT--EEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTTSBST
T ss_pred EEEEEECCCCCEEEEEeCCCeEEEEEcCCC--ceeEEEecccCcccchhhhhccccccccccCCceeEEEeccccccccc
Confidence 655 4567999999999999999999876 6777787 77 999999999999843333
Q ss_pred CCcceEEEEEeeCCcccccccC
Q 047325 346 TSSCAQRWIVYSGSLDKSDDDV 367 (368)
Q Consensus 346 ~~~~~~~w~l~sg~~D~~v~i~ 367 (368)
++.... .|++|+.||.|++|
T Consensus 372 ~~~~~~--~l~s~~~dg~i~iw 391 (397)
T 1sq9_A 372 GADLNE--SLCCVCLDRSIRWF 391 (397)
T ss_dssp TCTTSC--EEEEEETTTEEEEE
T ss_pred cccccc--eEEEecCCCcEEEE
Confidence 322222 57788888888887
No 23
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=100.00 E-value=2.4e-42 Score=300.69 Aligned_cols=285 Identities=15% Similarity=0.130 Sum_probs=216.9
Q ss_pred CCceeeeccCcCCcEEEEEecC---CEEEEccCCCcEEEEcCCcc----eecccCCCCCeeEEEEe---CCEEEEEeCCC
Q 047325 33 QNGLIGSLVREEGHIYSLAASK---DLLYTGSDSKNIRVWKNLKE----FCGFKASSGLVKAIVIS---GEKIFTGHQDG 102 (368)
Q Consensus 33 ~~~~~~~~~~h~~~i~~~~~~~---~~l~s~~~dg~i~iw~~~~~----~~~~~~~~~~v~~~~~~---~~~l~s~~~dg 102 (368)
...+.....+|...|+||+|+| ++||+|+.||+|+|||+... ...+.+|.+.|++|+|+ +++|++|+.||
T Consensus 108 ~~~~~~~~~~~~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~ 187 (435)
T 4e54_B 108 SYRILQKAAPFDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYASSMEG 187 (435)
T ss_dssp TTTSCCEEEECSSCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCCEEECCCSSSCCCCEEEECSSCTTEEEEECSSS
T ss_pred ceeecccCCCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCceeEEEccCCCCCEEEEEEeCCCCCEEEEEeCCC
Confidence 3445566778999999999985 38999999999999998632 34567899999999996 67999999999
Q ss_pred eEEEEeecCCCccccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcCCCCEEEEEeCCCcEEEEE
Q 047325 103 KIRVWKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCGLLYTASWDRTFKVWR 182 (368)
Q Consensus 103 ~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd 182 (368)
+|++||++++........ ..+...+.+++|+|++++|++|+.||.|++||
T Consensus 188 ~v~iwd~~~~~~~~~~~~------------------------------~~~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd 237 (435)
T 4e54_B 188 TTRLQDFKGNILRVFASS------------------------------DTINIWFCSLDVSASSRMVVTGDNVGNVILLN 237 (435)
T ss_dssp CEEEEETTSCEEEEEECC------------------------------SSCSCCCCCEEEETTTTEEEEECSSSBEEEEE
T ss_pred EEEEeeccCCceeEEecc------------------------------CCCCccEEEEEECCCCCEEEEEeCCCcEeeec
Confidence 999999976532111110 01445678999999999999999999999999
Q ss_pred ccCCeEEEEeecCCCceEEEEeCCCC--eEEEEcCCCeEEEEEcCCCCCCcccccceeeccccccEEEEEEcCCCCEEEE
Q 047325 183 ISDSKCLESVSAHDDAVNSVVSSSEG--LIFTGSADGTVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSSSRSIVYC 260 (368)
Q Consensus 183 ~~~~~~~~~~~~~~~~v~~~~~~~~~--~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~ 260 (368)
++ ++.+..+.+|...|.+++|+|++ ++++++.|+.|++||++..... .......+|...|.+++|+|++++|++
T Consensus 238 ~~-~~~~~~~~~h~~~v~~v~~~p~~~~~~~s~s~d~~v~iwd~~~~~~~---~~~~~~~~h~~~v~~~~~spdg~~l~s 313 (435)
T 4e54_B 238 MD-GKELWNLRMHKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGK---ASFLYSLPHRHPVNAACFSPDGARLLT 313 (435)
T ss_dssp SS-SCBCCCSBCCSSCEEEEEECTTCSSEEEEEETTSBCCEEETTTCCSS---SCCSBCCBCSSCEEECCBCTTSSEEEE
T ss_pred cC-cceeEEEecccceEEeeeecCCCceEEEEecCcceeeEEeccccccc---ceEEEeeeccccccceeECCCCCeeEE
Confidence 86 56677888999999999999987 7889999999999999875331 122334578899999999999999999
Q ss_pred ecCCCcEEEEeCCCccccceeeeccce--------EEEEEEeCCCEEEEee------------CCCeEEEEecCCCceee
Q 047325 261 GSSDGLVNFWEREKQLSHGGVLKGHKL--------AVLCLAAAGKLVFSGS------------ADKTICVWRRDGAIHTC 320 (368)
Q Consensus 261 ~~~dg~i~i~d~~~~~~~~~~~~~~~~--------~~~~~~~~~~~l~~~~------------~dg~i~iw~~~~~~~~~ 320 (368)
++.||.|++||+++...... ...|.. ....+++++.++++++ .++.|++||..++ +.
T Consensus 314 ~~~D~~i~iwd~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~g--~~ 390 (435)
T 4e54_B 314 TDQKSEIRVYSASQWDCPLG-LIPHPHRHFQHLTPIKAAWHPRYNLIVVGRYPDPNFKSCTPYELRTIDVFDGNSG--KM 390 (435)
T ss_dssp EESSSCEEEEESSSSSSEEE-ECCCCCCCCSSSCCCBCEECSSSSCEEEECCCCTTSCCSSTTCCCCEEEECSSSC--CE
T ss_pred EcCCCEEEEEECCCCccceE-EecccccccccceeEEEEEcCCCCEEEEEEcCCCCeEEEEecCCCEEEEEECCCC--cE
Confidence 99999999999987654422 222211 0123344444444442 3467999998776 45
Q ss_pred eEee-eccccCeeEE-EEecCCeeeecCCcceEEEEEeeCCcccccccC
Q 047325 321 LSVL-TGHTGPVKCL-AVEEDRDSSSSTSSCAQRWIVYSGSLDKSDDDV 367 (368)
Q Consensus 321 ~~~~-~~h~~~v~~l-~~~~~~~~~~~~~~~~~~w~l~sg~~D~~v~i~ 367 (368)
+..+ .+|...|.++ +|+|+|. +|++|+ |++|++|
T Consensus 391 ~~~l~~~~~~~v~s~~~fspdg~------------~lasg~-d~~i~iW 426 (435)
T 4e54_B 391 MCQLYDPESSGISSLNEFNPMGD------------TLASAM-GYHILIW 426 (435)
T ss_dssp EEEECCSSCCCCCCEEEECTTSS------------CEEEEC-SSEEEEC
T ss_pred EEEEeCCCCCcEEEEEEECCCCC------------EEEEEc-CCcEEEE
Confidence 5554 4688889988 6999999 455554 5566666
No 24
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=100.00 E-value=1.7e-41 Score=290.87 Aligned_cols=286 Identities=14% Similarity=0.129 Sum_probs=229.1
Q ss_pred ccCCCceeeeccCcCCcEEEEEecC---CEEEEccCCCcEEEEcCCcc--eecc--cCCCCCeeEEEEe---CCEEEEEe
Q 047325 30 NLPQNGLIGSLVREEGHIYSLAASK---DLLYTGSDSKNIRVWKNLKE--FCGF--KASSGLVKAIVIS---GEKIFTGH 99 (368)
Q Consensus 30 ~~~~~~~~~~~~~h~~~i~~~~~~~---~~l~s~~~dg~i~iw~~~~~--~~~~--~~~~~~v~~~~~~---~~~l~s~~ 99 (368)
.+....+...+.+|.+.|++++|++ ++|++|+.||.|++||+... ...+ .+|...|.+++|+ +++|++++
T Consensus 59 ~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~ 138 (383)
T 3ei3_B 59 SLKSYKLHRTASPFDRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKTSFIQGMGPGDAITGMKFNQFNTNQLFVSS 138 (383)
T ss_dssp HHTTCEEEEEECCCSSCEEEEEECSSCTTEEEEEEBTSCEEEEETTSTTCEEEECCCSTTCBEEEEEEETTEEEEEEEEE
T ss_pred cccccceEEeccCCCCCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCcccceeeecCCcCCceeEEEeCCCCCCEEEEEe
Confidence 3466778889999999999999985 48999999999999998743 3333 4699999999997 36999999
Q ss_pred CCCeEEEEeecCCCccccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcCCCCEEEEEeCCCcEE
Q 047325 100 QDGKIRVWKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCGLLYTASWDRTFK 179 (368)
Q Consensus 100 ~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~ 179 (368)
.||.|++||+.+........ ..+|...|.+++|+|++++|++++.|+.|+
T Consensus 139 ~d~~i~iwd~~~~~~~~~~~------------------------------~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~ 188 (383)
T 3ei3_B 139 IRGATTLRDFSGSVIQVFAK------------------------------TDSWDYWYCCVDVSVSRQMLATGDSTGRLL 188 (383)
T ss_dssp TTTEEEEEETTSCEEEEEEC------------------------------CCCSSCCEEEEEEETTTTEEEEEETTSEEE
T ss_pred CCCEEEEEECCCCceEEEec------------------------------cCCCCCCeEEEEECCCCCEEEEECCCCCEE
Confidence 99999999998532111100 012568899999999999999999999999
Q ss_pred EEEccCCeEEEEeecCCCceEEEEeCCCC--eEEEEcCCCeEEEEEcCCCCCCcccccceeeccccccEEEEEEcC-CCC
Q 047325 180 VWRISDSKCLESVSAHDDAVNSVVSSSEG--LIFTGSADGTVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSS-SRS 256 (368)
Q Consensus 180 iwd~~~~~~~~~~~~~~~~v~~~~~~~~~--~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~ 256 (368)
+||+ +++++..+..|...|.+++|+|++ ++++++.|+.|++||++..... ......+ .|...|.+++|+| +++
T Consensus 189 i~d~-~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~--~~~~~~~-~~~~~v~~~~~s~~~~~ 264 (383)
T 3ei3_B 189 LLGL-DGHEIFKEKLHKAKVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKDK--NSYIAEM-PHEKPVNAAYFNPTDST 264 (383)
T ss_dssp EEET-TSCEEEEEECSSSCEEEEEECSSCTTEEEEEETTSEEEEEEGGGCCST--TCEEEEE-ECSSCEEEEEECTTTSC
T ss_pred EEEC-CCCEEEEeccCCCcEEEEEECCCCCCEEEEEeCCCEEEEEeCCCCCcc--cceEEEe-cCCCceEEEEEcCCCCC
Confidence 9999 678889999999999999999998 7999999999999999874321 1223333 6889999999999 999
Q ss_pred EEEEecCCCcEEEEeCCCccccceeeeccc-------------------eEEEEEEeCCCEEEEeeCCCeEEEEecCCCc
Q 047325 257 IVYCGSSDGLVNFWEREKQLSHGGVLKGHK-------------------LAVLCLAAAGKLVFSGSADKTICVWRRDGAI 317 (368)
Q Consensus 257 ~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~-------------------~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~ 317 (368)
+|++++.|+.|++||+++...... +..|. ....++++++++ +|+.||.|++||+.++
T Consensus 265 ~l~~~~~d~~i~iwd~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~s~dg~~--s~s~d~~i~iwd~~~~- 340 (383)
T 3ei3_B 265 KLLTTDQRNEIRVYSSYDWSKPDQ-IIIHPHRQFQHLTPIKATWHPMYDLIVAGRYPDDQL--LLNDKRTIDIYDANSG- 340 (383)
T ss_dssp EEEEEESSSEEEEEETTBTTSCSE-EEECCBCCCTTSCCCCCEECSSSSEEEEECBCCTTT--CTTCCCCEEEEETTTC-
T ss_pred EEEEEcCCCcEEEEECCCCccccc-cccccccccccccceEEeccCCCCceEEEecCCccc--ccCCCCeEEEEecCCC-
Confidence 999999999999999987665432 22221 112445567776 8889999999999876
Q ss_pred eeeeEeeec--cccCeeEEEEecCCeeeecCCcceEEEEEeeCCcccccccC
Q 047325 318 HTCLSVLTG--HTGPVKCLAVEEDRDSSSSTSSCAQRWIVYSGSLDKSDDDV 367 (368)
Q Consensus 318 ~~~~~~~~~--h~~~v~~l~~~~~~~~~~~~~~~~~~w~l~sg~~D~~v~i~ 367 (368)
+.+..+.+ |...+..++|+|++. .|++|+ |+.|++|
T Consensus 341 -~~~~~l~~~~~~~~~~~~~~s~~g~------------~l~s~s-d~~i~iw 378 (383)
T 3ei3_B 341 -GLVHQLRDPNAAGIISLNKFSPTGD------------VLASGM-GFNILIW 378 (383)
T ss_dssp -CEEEEECBTTBCSCCCEEEECTTSS------------EEEEEE-TTEEEEE
T ss_pred -ceeeeecCCCCCceEEEEEEecCcc------------EEEEec-CCcEEEE
Confidence 56677766 567788889999999 677775 7888887
No 25
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=100.00 E-value=6e-41 Score=302.68 Aligned_cols=277 Identities=27% Similarity=0.439 Sum_probs=237.3
Q ss_pred CCceeeeccCcCCcEEEEEecCC--EEEEccCCCcEEEEcCCc-ceecccCCCCCeeEEEEe--CCEEEEEeCCCeEEEE
Q 047325 33 QNGLIGSLVREEGHIYSLAASKD--LLYTGSDSKNIRVWKNLK-EFCGFKASSGLVKAIVIS--GEKIFTGHQDGKIRVW 107 (368)
Q Consensus 33 ~~~~~~~~~~h~~~i~~~~~~~~--~l~s~~~dg~i~iw~~~~-~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~vw 107 (368)
..+.+..+.+|...|.+++|+++ .|++++.|+.|++||... ....+.+|...|.+++|+ +.+|++++.||.|++|
T Consensus 251 ~~~~~~~~~~~~~~v~~v~~~~d~~~l~~~~~d~~i~~w~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~~~d~~i~~w 330 (577)
T 2ymu_A 251 NGQLLQTLTGHSSSVNGVAFRPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLW 330 (577)
T ss_dssp TSCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTSCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEE
T ss_pred CCCEEEEEecCCCCEEEEEEcCCCCEEEEEeCCCEEEEEeCCCcEEEEEecCCCCeEEEEECCCCCEEEEEeCCCeEEEE
Confidence 45667788999999999999865 999999999999999764 455678999999999998 7799999999999999
Q ss_pred eecCCCccccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcCCCCEEEEEeCCCcEEEEEccCCe
Q 047325 108 KISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCGLLYTASWDRTFKVWRISDSK 187 (368)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~ 187 (368)
|...... ..+.+|...|.+++|+|++++|++++.|+.|++||. +++
T Consensus 331 ~~~~~~~---------------------------------~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~~~~~-~~~ 376 (577)
T 2ymu_A 331 NRNGQHL---------------------------------QTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNR-NGQ 376 (577)
T ss_dssp ETTSCEE---------------------------------EEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEET-TCC
T ss_pred eCCCCee---------------------------------EEEeCCCCCEEEEEECCCCCEEEEEeCCCEEEEEcC-CCC
Confidence 9764421 122348899999999999999999999999999995 678
Q ss_pred EEEEeecCCCceEEEEeCCCC-eEEEEcCCCeEEEEEcCCCCCCcccccceeeccccccEEEEEEcCCCCEEEEecCCCc
Q 047325 188 CLESVSAHDDAVNSVVSSSEG-LIFTGSADGTVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSSSRSIVYCGSSDGL 266 (368)
Q Consensus 188 ~~~~~~~~~~~v~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~ 266 (368)
.+..+.+|...|.+++|+|++ +|++++.|+.|++||... .....+..|...|.+++|+|++++|++++.|+.
T Consensus 377 ~~~~~~~~~~~v~~~~~s~dg~~l~~~~~d~~v~~~~~~~-------~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~d~~ 449 (577)
T 2ymu_A 377 LLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNG-------QLLQTLTGHSSSVWGVAFSPDDQTIASASDDKT 449 (577)
T ss_dssp EEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECTTC-------CEEEEEECCSSCEEEEEECTTSSEEEEEETTSE
T ss_pred EEEEecCCCCCeEEEEECCCCCEEEEEeCCCEEEEEeCCC-------CEEEEecCCCCCeEEEEECCCCCEEEEEcCCCE
Confidence 888999999999999999999 999999999999999643 245677889999999999999999999999999
Q ss_pred EEEEeCCCccccceeeeccceEEE--EEEeCCCEEEEeeCCCeEEEEecCCCceeeeEeeeccccCeeEEEEecCCeeee
Q 047325 267 VNFWEREKQLSHGGVLKGHKLAVL--CLAAAGKLVFSGSADKTICVWRRDGAIHTCLSVLTGHTGPVKCLAVEEDRDSSS 344 (368)
Q Consensus 267 i~i~d~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~ 344 (368)
|++||.... . ...+.+|...+. +++|++++|++++.|+.|++||... +.+..+.+|..+|++++|+|+++
T Consensus 450 v~~w~~~~~-~-~~~~~~~~~~v~~~~~spd~~~las~~~d~~i~iw~~~~---~~~~~~~~h~~~v~~l~~s~dg~--- 521 (577)
T 2ymu_A 450 VKLWNRNGQ-L-LQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNG---QLLQTLTGHSSSVRGVAFSPDGQ--- 521 (577)
T ss_dssp EEEEETTSC-E-EEEEECCSSCEEEEEECTTSCEEEEEETTSEEEEEETTS---CEEEEEECCSSCEEEEEECTTSS---
T ss_pred EEEEECCCC-E-EEEEcCCCCCEEEEEEcCCCCEEEEEeCCCEEEEEcCCC---CEEEEEeCCCCCEEEEEEcCCCC---
Confidence 999997543 2 245667777774 5567899999999999999999643 67788999999999999999999
Q ss_pred cCCcceEEEEEeeCCcccccccC
Q 047325 345 STSSCAQRWIVYSGSLDKSDDDV 367 (368)
Q Consensus 345 ~~~~~~~~w~l~sg~~D~~v~i~ 367 (368)
+|++++.|+.|++|
T Consensus 522 ---------~l~s~~~dg~v~lw 535 (577)
T 2ymu_A 522 ---------TIASASDDKTVKLW 535 (577)
T ss_dssp ---------CEEEEETTSEEEEE
T ss_pred ---------EEEEEECcCEEEEE
Confidence 56677777777776
No 26
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=100.00 E-value=1.6e-40 Score=279.75 Aligned_cols=278 Identities=17% Similarity=0.293 Sum_probs=230.3
Q ss_pred ceeeeccCcCCcEEEEEecCC--EEEEccCCCcEEEEcCCcc-----eeccc--CCCCCeeEEEEe--CCEEEEEeCCCe
Q 047325 35 GLIGSLVREEGHIYSLAASKD--LLYTGSDSKNIRVWKNLKE-----FCGFK--ASSGLVKAIVIS--GEKIFTGHQDGK 103 (368)
Q Consensus 35 ~~~~~~~~h~~~i~~~~~~~~--~l~s~~~dg~i~iw~~~~~-----~~~~~--~~~~~v~~~~~~--~~~l~s~~~dg~ 103 (368)
.......+|.+.|.+++|+++ +|++++ ||.|++||+... ...+. .|...|.+++|+ +++|++++.||.
T Consensus 42 ~~~~~~~~h~~~v~~~~~~~~~~~l~~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~ 120 (337)
T 1gxr_A 42 ARQINTLNHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEAST 120 (337)
T ss_dssp EEEEEEECCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEESSSE
T ss_pred cccceeccCCCceEEEEEecCCcEEEEcC-CCeEEEEECCCCCceeeeecccccCCCCcEEEEEEcCCCCEEEEEcCCCc
Confidence 333445589999999999865 888888 999999998642 22222 789999999998 779999999999
Q ss_pred EEEEeecCCCccccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcCCCCEEEEEeCCCcEEEEEc
Q 047325 104 IRVWKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCGLLYTASWDRTFKVWRI 183 (368)
Q Consensus 104 i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~ 183 (368)
|++||+.+++... ...+.+|...|.+++|+|+++++++++.|+.|++||+
T Consensus 121 i~~~d~~~~~~~~------------------------------~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~~~d~ 170 (337)
T 1gxr_A 121 LSIWDLAAPTPRI------------------------------KAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDL 170 (337)
T ss_dssp EEEEECCCC--EE------------------------------EEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEET
T ss_pred EEEEECCCCCcce------------------------------eeecccCCCceEEEEECCCCCEEEEEeCCCcEEEEeC
Confidence 9999998765211 1123348889999999999999999999999999999
Q ss_pred cCCeEEEEeecCCCceEEEEeCCCC-eEEEEcCCCeEEEEEcCCCCCCcccccceeeccccccEEEEEEcCCCCEEEEec
Q 047325 184 SDSKCLESVSAHDDAVNSVVSSSEG-LIFTGSADGTVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSSSRSIVYCGS 262 (368)
Q Consensus 184 ~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~ 262 (368)
++++.+..+..|...+.+++|+|++ .+++++.|+.|++||++... ... ...+...+.+++|+|++++|++++
T Consensus 171 ~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~------~~~-~~~~~~~v~~~~~s~~~~~l~~~~ 243 (337)
T 1gxr_A 171 HNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGR------QLQ-QHDFTSQIFSLGYCPTGEWLAVGM 243 (337)
T ss_dssp TTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTE------EEE-EEECSSCEEEEEECTTSSEEEEEE
T ss_pred CCCceeeeeecccCceEEEEECCCCCEEEEEecCCcEEEEECCCCc------eEe-eecCCCceEEEEECCCCCEEEEEc
Confidence 9999999999999999999999999 99999999999999998652 222 234677899999999999999999
Q ss_pred CCCcEEEEeCCCccccceeeeccceEEE--EEEeCCCEEEEeeCCCeEEEEecCCCceeeeEeeeccccCeeEEEEecCC
Q 047325 263 SDGLVNFWEREKQLSHGGVLKGHKLAVL--CLAAAGKLVFSGSADKTICVWRRDGAIHTCLSVLTGHTGPVKCLAVEEDR 340 (368)
Q Consensus 263 ~dg~i~i~d~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~l~~~~~~ 340 (368)
.++.|++||+++.... ....|...+. ++++++++|++++.||.|++||+... +.+.. ..|..+|++++|+|++
T Consensus 244 ~~~~i~~~~~~~~~~~--~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~--~~~~~-~~~~~~v~~~~~s~~~ 318 (337)
T 1gxr_A 244 ESSNVEVLHVNKPDKY--QLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYG--ASIFQ-SKESSSVLSCDISVDD 318 (337)
T ss_dssp TTSCEEEEETTSSCEE--EECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTC--CEEEE-EECSSCEEEEEECTTS
T ss_pred CCCcEEEEECCCCCeE--EEcCCccceeEEEECCCCCEEEEecCCCcEEEEECCCC--eEEEE-ecCCCcEEEEEECCCC
Confidence 9999999999986543 4556666664 45567999999999999999999876 33333 4588999999999999
Q ss_pred eeeecCCcceEEEEEeeCCcccccccC
Q 047325 341 DSSSSTSSCAQRWIVYSGSLDKSDDDV 367 (368)
Q Consensus 341 ~~~~~~~~~~~~w~l~sg~~D~~v~i~ 367 (368)
. .|++++.||.|++|
T Consensus 319 ~------------~l~~~~~dg~i~iw 333 (337)
T 1gxr_A 319 K------------YIVTGSGDKKATVY 333 (337)
T ss_dssp C------------EEEEEETTSCEEEE
T ss_pred C------------EEEEecCCCeEEEE
Confidence 9 67888888888887
No 27
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=100.00 E-value=2.1e-40 Score=289.52 Aligned_cols=273 Identities=22% Similarity=0.441 Sum_probs=205.6
Q ss_pred CCceeeeccCcCCcEEEEEecCCEEEEccCCCcEEEEcCCc--ceecccCCCCCeeEEEEeCCEEEEEeCCCeEEEEeec
Q 047325 33 QNGLIGSLVREEGHIYSLAASKDLLYTGSDSKNIRVWKNLK--EFCGFKASSGLVKAIVISGEKIFTGHQDGKIRVWKIS 110 (368)
Q Consensus 33 ~~~~~~~~~~h~~~i~~~~~~~~~l~s~~~dg~i~iw~~~~--~~~~~~~~~~~v~~~~~~~~~l~s~~~dg~i~vw~~~ 110 (368)
.++.+..+.+|.+.|.+++++++++++|+.||+|++||+.+ ....+.+|...|.++.++++.+++|+.||.|++||+.
T Consensus 148 ~~~~~~~~~~h~~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~l~s~s~dg~i~~wd~~ 227 (445)
T 2ovr_B 148 TGKCLRTLVGHTGGVWSSQMRDNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIE 227 (445)
T ss_dssp TCCEEEECCCCSSCEEEEEEETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTEEEEEETTSEEEEEESS
T ss_pred CCcEEEEEcCCCCCEEEEEecCCEEEEEeCCCeEEEEECCcCcEEEEECCCCCcEEEEEecCCEEEEEeCCCEEEEEECC
Confidence 34444555555555555555555555555555555555442 2334445555555555555555555555555555554
Q ss_pred CCCccccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcCCCCEEEEEeCCCcEEEEEccCCeEEE
Q 047325 111 PKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCGLLYTASWDRTFKVWRISDSKCLE 190 (368)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~ 190 (368)
+++. ...+.+|...|.++.+ +++++++++.||.|++||+++++++.
T Consensus 228 ~~~~--------------------------------~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~iwd~~~~~~~~ 273 (445)
T 2ovr_B 228 TGQC--------------------------------LHVLMGHVAAVRCVQY--DGRRVVSGAYDFMVKVWDPETETCLH 273 (445)
T ss_dssp SCCE--------------------------------EEEEECCSSCEEEEEE--CSSCEEEEETTSCEEEEEGGGTEEEE
T ss_pred CCcE--------------------------------EEEEcCCcccEEEEEE--CCCEEEEEcCCCEEEEEECCCCcEeE
Confidence 4332 2344569999999999 67899999999999999999999999
Q ss_pred EeecCCCceEEEEeCCCCeEEEEcCCCeEEEEEcCCCCCCcccccceeeccccccEEEEEEcCCCCEEEEecCCCcEEEE
Q 047325 191 SVSAHDDAVNSVVSSSEGLIFTGSADGTVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSSSRSIVYCGSSDGLVNFW 270 (368)
Q Consensus 191 ~~~~~~~~v~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~ 270 (368)
.+.+|...|.++.+ ....+++++.|+.|++||++... ....+..|...+.++.++ ++++++|+.||.|++|
T Consensus 274 ~~~~~~~~v~~~~~-~~~~l~~~~~d~~i~i~d~~~~~------~~~~~~~~~~~v~~~~~~--~~~l~~~~~dg~i~vw 344 (445)
T 2ovr_B 274 TLQGHTNRVYSLQF-DGIHVVSGSLDTSIRVWDVETGN------CIHTLTGHQSLTSGMELK--DNILVSGNADSTVKIW 344 (445)
T ss_dssp EECCCSSCEEEEEE-CSSEEEEEETTSCEEEEETTTCC------EEEEECCCCSCEEEEEEE--TTEEEEEETTSCEEEE
T ss_pred EecCCCCceEEEEE-CCCEEEEEeCCCeEEEEECCCCC------EEEEEcCCcccEEEEEEe--CCEEEEEeCCCeEEEE
Confidence 99999999999999 23399999999999999998763 456677888889888874 6799999999999999
Q ss_pred eCCCccccceeeec---cceEEEEEEeCCCEEEEeeCCCeEEEEecCCCceeeeEee-----eccccCeeEEEEecCCee
Q 047325 271 EREKQLSHGGVLKG---HKLAVLCLAAAGKLVFSGSADKTICVWRRDGAIHTCLSVL-----TGHTGPVKCLAVEEDRDS 342 (368)
Q Consensus 271 d~~~~~~~~~~~~~---~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~-----~~h~~~v~~l~~~~~~~~ 342 (368)
|++++... ..+.. |...+.++.+++++|++|+.||.|++||+.++ +.+..+ .+|.+.|++++|+|++.
T Consensus 345 d~~~~~~~-~~~~~~~~~~~~v~~~~~~~~~l~s~~~dg~v~iwd~~~~--~~~~~~~~~~~~~~~~~v~~~~~s~~~~- 420 (445)
T 2ovr_B 345 DIKTGQCL-QTLQGPNKHQSAVTCLQFNKNFVITSSDDGTVKLWDLKTG--EFIRNLVTLESGGSGGVVWRIRASNTKL- 420 (445)
T ss_dssp ETTTCCEE-EEECSTTSCSSCEEEEEECSSEEEEEETTSEEEEEETTTC--CEEEEEEECTTGGGTCEEEEEEECSSEE-
T ss_pred ECCCCcEE-EEEccCCCCCCCEEEEEECCCEEEEEeCCCeEEEEECCCC--ceeeeeeccccCCCCceEEEEEecCCEE-
Confidence 99887655 34443 88889999999999999999999999999876 455555 46888999999999999
Q ss_pred eecCCcceEEEEEeeCCcccc
Q 047325 343 SSSTSSCAQRWIVYSGSLDKS 363 (368)
Q Consensus 343 ~~~~~~~~~~w~l~sg~~D~~ 363 (368)
.+++|+.||+
T Consensus 421 -----------~la~~~~dg~ 430 (445)
T 2ovr_B 421 -----------VCAVGSRNGT 430 (445)
T ss_dssp -----------EEEEECSSSS
T ss_pred -----------EEEEcccCCC
Confidence 5677777776
No 28
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=100.00 E-value=4.7e-41 Score=280.24 Aligned_cols=239 Identities=19% Similarity=0.270 Sum_probs=210.6
Q ss_pred eeeeccCcCCcEEEEEecCC--EEEEccCCCcEEEEcCCc--ceecccCCCCCeeEEEEe--CCEEEEEeCCCeEEEEee
Q 047325 36 LIGSLVREEGHIYSLAASKD--LLYTGSDSKNIRVWKNLK--EFCGFKASSGLVKAIVIS--GEKIFTGHQDGKIRVWKI 109 (368)
Q Consensus 36 ~~~~~~~h~~~i~~~~~~~~--~l~s~~~dg~i~iw~~~~--~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~vw~~ 109 (368)
+...+.+|...|.+++++++ ++++|+.|++|++||+.+ .+..+..|...+.+++|+ +++|++|+.||.|++|++
T Consensus 72 ~~~~l~gh~~~v~~~~~~~~~~~l~s~s~D~~i~lWd~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~g~~dg~v~i~~~ 151 (321)
T 3ow8_A 72 LQWSLEGHQLGVVSVDISHTLPIAASSSLDAHIRLWDLENGKQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGV 151 (321)
T ss_dssp EEEEECCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCCCCEEECTTSSEEEEECTTSEEEEEET
T ss_pred eeeeeccCCCCEEEEEECCCCCEEEEEeCCCcEEEEECCCCCEEEEEeCCCccEEEEEECCCCCEEEEEcCCCcEEEEEc
Confidence 45578999999999999865 999999999999999875 355677888899999998 789999999999999999
Q ss_pred cCCCccccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcCCCCEEEEEeCCCcEEEEEccCCeEE
Q 047325 110 SPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCGLLYTASWDRTFKVWRISDSKCL 189 (368)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~ 189 (368)
++++... .+..|...|.+++|+|++++|++++.|+.|++||+++++.+
T Consensus 152 ~~~~~~~--------------------------------~~~~~~~~v~~~~~spdg~~lasg~~dg~i~iwd~~~~~~~ 199 (321)
T 3ow8_A 152 ESGKKEY--------------------------------SLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATGKLL 199 (321)
T ss_dssp TTCSEEE--------------------------------EEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEE
T ss_pred CCCceeE--------------------------------EecCCCceEEEEEECCCCCEEEEEcCCCeEEEEECCCCcEE
Confidence 8775322 22337788999999999999999999999999999999999
Q ss_pred EEeecCCCceEEEEeCCCC-eEEEEcCCCeEEEEEcCCCCCCcccccceeeccccccEEEEEEcCCCCEEEEecCCCcEE
Q 047325 190 ESVSAHDDAVNSVVSSSEG-LIFTGSADGTVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSSSRSIVYCGSSDGLVN 268 (368)
Q Consensus 190 ~~~~~~~~~v~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~ 268 (368)
..+.+|..+|.+++|+|++ +|++++.|+.|++||++.. .....+.+|...|.+++|+|++++|++++.|+.|+
T Consensus 200 ~~~~~h~~~v~~l~~spd~~~l~s~s~dg~i~iwd~~~~------~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~D~~v~ 273 (321)
T 3ow8_A 200 HTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHA------NLAGTLSGHASWVLNVAFCPDDTHFVSSSSDKSVK 273 (321)
T ss_dssp EEECCCSSCCCEEEECTTSCEEEEECTTSCEEEEETTTC------CEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEE
T ss_pred EEEcccCCceeEEEEcCCCCEEEEEcCCCeEEEEECCCc------ceeEEEcCCCCceEEEEECCCCCEEEEEeCCCcEE
Confidence 9999999999999999999 9999999999999999865 24567788999999999999999999999999999
Q ss_pred EEeCCCccccceeeeccceEEEEE--EeCCCEEEEeeCCCeEEEEec
Q 047325 269 FWEREKQLSHGGVLKGHKLAVLCL--AAAGKLVFSGSADKTICVWRR 313 (368)
Q Consensus 269 i~d~~~~~~~~~~~~~~~~~~~~~--~~~~~~l~~~~~dg~i~iw~~ 313 (368)
+||++++... ..+.+|...+.++ ++++++|++++.||.|++||.
T Consensus 274 iwd~~~~~~~-~~~~~h~~~v~~v~~s~~g~~l~s~~~d~~i~vwd~ 319 (321)
T 3ow8_A 274 VWDVGTRTCV-HTFFDHQDQVWGVKYNGNGSKIVSVGDDQEIHIYDC 319 (321)
T ss_dssp EEETTTTEEE-EEECCCSSCEEEEEECTTSSEEEEEETTCCEEEEEC
T ss_pred EEeCCCCEEE-EEEcCCCCcEEEEEECCCCCEEEEEeCCCeEEEEeC
Confidence 9999987655 5566788777555 457899999999999999985
No 29
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.1e-41 Score=294.23 Aligned_cols=294 Identities=18% Similarity=0.259 Sum_probs=227.1
Q ss_pred CCCceeeec-cCcCCcEEEEEecC-C--EEEEccCCCcEEEEcCCc---ce---eccc-CCCCCeeEEEEe--CCEEEEE
Q 047325 32 PQNGLIGSL-VREEGHIYSLAASK-D--LLYTGSDSKNIRVWKNLK---EF---CGFK-ASSGLVKAIVIS--GEKIFTG 98 (368)
Q Consensus 32 ~~~~~~~~~-~~h~~~i~~~~~~~-~--~l~s~~~dg~i~iw~~~~---~~---~~~~-~~~~~v~~~~~~--~~~l~s~ 98 (368)
+.++++..+ .+|.+.|++++|++ + +|++|+.||+|++||+.+ .. .... .|...|.+++|+ +++|++|
T Consensus 50 ~~g~~~~~~~~~h~~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~ 129 (437)
T 3gre_A 50 LRGKLIATLMENEPNSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGEVYSSSLTYDCSSTVTQITMIPNFDAFAVS 129 (437)
T ss_dssp CCCCEEEEECTTTTSCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTTCCCSCSEEEECSSCEEEEEECTTSSEEEEE
T ss_pred ccceEEeeeccCCCCceEEEEECCCCCCEEEEecCCceEEEeECcccccCcccceeeeccCCCCEEEEEEeCCCCEEEEE
Confidence 556778888 89999999999987 4 999999999999999754 21 1222 589999999998 7899999
Q ss_pred eCCCeEEEEeec---CCCccccccCCccccceeeeeccCCCCceeEecccceeeeee--cCCCEeEEE--EcCCCCEEEE
Q 047325 99 HQDGKIRVWKIS---PKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIR--HSDAVSCMS--LDQDCGLLYT 171 (368)
Q Consensus 99 ~~dg~i~vw~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~~~~--~~~~~~~l~~ 171 (368)
+.||.|++||++ .++........ ......+.. +...+.++. +++++.+|++
T Consensus 130 s~dg~i~vwd~~~~~~~~~~~~~~~~----------------------~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 187 (437)
T 3gre_A 130 SKDGQIIVLKVNHYQQESEVKFLNCE----------------------CIRKINLKNFGKNEYAVRMRAFVNEEKSLLVA 187 (437)
T ss_dssp ETTSEEEEEEEEEEEETTEEEEEEEE----------------------EEEEEEGGGGSSCCCEEEEEEEECSSCEEEEE
T ss_pred eCCCEEEEEEeccccCCceeeccccc----------------------eeEEEEccCcccccCceEEEEEEcCCCCEEEE
Confidence 999999999995 33221111000 000000111 456778887 5688999999
Q ss_pred EeCCCcEEEEEccCCeEEEEeec--CCCceEEEEeCCCC-eEEEEcCCCeEEEEEcCCCCCCcccccceeec-cccccEE
Q 047325 172 ASWDRTFKVWRISDSKCLESVSA--HDDAVNSVVSSSEG-LIFTGSADGTVKVWKREQHGKGTKHSLAQTLL-KQECAVT 247 (368)
Q Consensus 172 ~~~d~~i~iwd~~~~~~~~~~~~--~~~~v~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~-~~~~~i~ 247 (368)
++.|+.|++||+++++++..+.. |...|.+++|+|++ +|++|+.||.|++||++.. .....+. .+...|.
T Consensus 188 ~~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~------~~~~~~~~~~~~~v~ 261 (437)
T 3gre_A 188 LTNLSRVIIFDIRTLERLQIIENSPRHGAVSSICIDEECCVLILGTTRGIIDIWDIRFN------VLIRSWSFGDHAPIT 261 (437)
T ss_dssp EETTSEEEEEETTTCCEEEEEECCGGGCCEEEEEECTTSCEEEEEETTSCEEEEETTTT------EEEEEEBCTTCEEEE
T ss_pred EeCCCeEEEEeCCCCeeeEEEccCCCCCceEEEEECCCCCEEEEEcCCCeEEEEEcCCc------cEEEEEecCCCCceE
Confidence 99999999999999999999988 88999999999999 9999999999999999864 2344443 6778999
Q ss_pred EEEEcC----CCCEEEEecCCCcEEEEeCCCccccceee-----------------------ec--cceEE--EEEEeCC
Q 047325 248 ALVVSS----SRSIVYCGSSDGLVNFWEREKQLSHGGVL-----------------------KG--HKLAV--LCLAAAG 296 (368)
Q Consensus 248 ~~~~~~----~~~~l~~~~~dg~i~i~d~~~~~~~~~~~-----------------------~~--~~~~~--~~~~~~~ 296 (368)
+++++| ++.+|++|+.||.|++||++++....... .+ |...+ ++++ ++
T Consensus 262 ~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~-~~ 340 (437)
T 3gre_A 262 HVEVCQFYGKNSVIVVGGSSKTFLTIWNFVKGHCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVS-ND 340 (437)
T ss_dssp EEEECTTTCTTEEEEEEESTTEEEEEEETTTTEEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEE-TT
T ss_pred EEEeccccCCCccEEEEEcCCCcEEEEEcCCCcEEEEEEcCCCCCccceecccccccccceecccccCCceEEEEEC-Cc
Confidence 996654 67799999999999999998765432221 11 33344 4555 67
Q ss_pred CEEEEeeCCCeEEEEecCCCceeeeEeeec-------------------------------------cccCeeEEEEecC
Q 047325 297 KLVFSGSADKTICVWRRDGAIHTCLSVLTG-------------------------------------HTGPVKCLAVEED 339 (368)
Q Consensus 297 ~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~-------------------------------------h~~~v~~l~~~~~ 339 (368)
++|++|+.||.|++||+.++ +....+.+ |...|++++|+++
T Consensus 341 ~~l~s~~~d~~i~~wd~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~i~~~~~ 418 (437)
T 3gre_A 341 KILLTDEATSSIVMFSLNEL--SSSKAVISPSRFSDVFIPTQVTANLTMLLRKMKRTSTHSVDDSLYHHDIINSISTCEV 418 (437)
T ss_dssp EEEEEEGGGTEEEEEETTCG--GGCEEEECC--CCCEEEEEEEETTEEEEEEECC-------------CCCEEEEEEEES
T ss_pred eEEEecCCCCeEEEEECCCc--ccceEEecccccCceEEEEEeecceEEEEEecccccccccCcccccccceeeEeeecc
Confidence 89999999999999999876 33333333 8899999999998
Q ss_pred --CeeeecCCcceEEEEEeeCCcccccccCC
Q 047325 340 --RDSSSSTSSCAQRWIVYSGSLDKSDDDVH 368 (368)
Q Consensus 340 --~~~~~~~~~~~~~w~l~sg~~D~~v~i~h 368 (368)
+. +|++|+.||.|++|.
T Consensus 419 ~~~~------------~l~s~~~dG~I~iw~ 437 (437)
T 3gre_A 419 DETP------------LLVACDNSGLIGIFQ 437 (437)
T ss_dssp SSSE------------EEEEEETTSCEEEEC
T ss_pred CCce------------EEEEEcCCceEEEeC
Confidence 66 799999999999994
No 30
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=100.00 E-value=4.3e-41 Score=290.17 Aligned_cols=240 Identities=24% Similarity=0.390 Sum_probs=211.2
Q ss_pred eecccCCCCCeeEEEEe--CCEEEEEeCCCeEEEEeecCCCccccccCCccccceeeeeccCCCCceeEecccceeeeee
Q 047325 75 FCGFKASSGLVKAIVIS--GEKIFTGHQDGKIRVWKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIR 152 (368)
Q Consensus 75 ~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (368)
...+.+|..+|++++|+ +.+|++|+.||+|++||+.+++... .+.+
T Consensus 101 ~~~l~gh~~~V~~~~~~p~~~~l~s~s~Dg~i~vwd~~~~~~~~--------------------------------~l~~ 148 (410)
T 1vyh_C 101 KYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFER--------------------------------TLKG 148 (410)
T ss_dssp SCEEECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCE--------------------------------EECC
T ss_pred eEeecccCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEE--------------------------------EEec
Confidence 45678999999999998 7899999999999999998876322 3345
Q ss_pred cCCCEeEEEEcCCCCEEEEEeCCCcEEEEEccCCeEEEEeecCCCceEEEEeCCCC-eEEEEcCCCeEEEEEcCCCCCCc
Q 047325 153 HSDAVSCMSLDQDCGLLYTASWDRTFKVWRISDSKCLESVSAHDDAVNSVVSSSEG-LIFTGSADGTVKVWKREQHGKGT 231 (368)
Q Consensus 153 ~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~ 231 (368)
|.+.|.+++|+|++++|++|+.|++|++||+.+++++..+.+|...|.+++|+|++ .|++|+.|+.|++||++.+
T Consensus 149 h~~~V~~v~~~~~~~~l~sgs~D~~i~iwd~~~~~~~~~~~~h~~~V~~v~~~p~~~~l~s~s~D~~i~~wd~~~~---- 224 (410)
T 1vyh_C 149 HTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTG---- 224 (410)
T ss_dssp CSSCEEEEEECTTSSEEEEEETTSCCCEEETTSSCEEECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTC----
T ss_pred cCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCC----
Confidence 99999999999999999999999999999999999999999999999999999999 9999999999999999876
Q ss_pred ccccceeeccccccEEEEEEcCCCCEEEEecCCCcEEEEeCCCccccceeeeccceEEEEEEe--C--------------
Q 047325 232 KHSLAQTLLKQECAVTALVVSSSRSIVYCGSSDGLVNFWEREKQLSHGGVLKGHKLAVLCLAA--A-------------- 295 (368)
Q Consensus 232 ~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~--~-------------- 295 (368)
.+...+.+|...|.++.++|++++|++|+.|+.|++||+++.... ..+.+|...+.++.+ +
T Consensus 225 --~~~~~~~~h~~~v~~~~~~~~g~~l~s~s~D~~v~vwd~~~~~~~-~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~ 301 (410)
T 1vyh_C 225 --YCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECK-AELREHRHVVECISWAPESSYSSISEATGSET 301 (410)
T ss_dssp --CEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEE-EEECCCSSCEEEEEECCSCGGGGGGGCCSCC-
T ss_pred --cEEEEEeCCCccEEEEEECCCCCEEEEEcCCCeEEEEECCCCcee-eEecCCCceEEEEEEcCcccccchhhhccccc
Confidence 346677889999999999999999999999999999999886554 456678877766654 3
Q ss_pred ------CCEEEEeeCCCeEEEEecCCCceeeeEeeeccccCeeEEEEecCCeeeecCCcceEEEEEeeCCcccccccC
Q 047325 296 ------GKLVFSGSADKTICVWRRDGAIHTCLSVLTGHTGPVKCLAVEEDRDSSSSTSSCAQRWIVYSGSLDKSDDDV 367 (368)
Q Consensus 296 ------~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~w~l~sg~~D~~v~i~ 367 (368)
+.+|++|+.|+.|++||+.++ .++..+.+|...|++++|+|++. .|++|+.|++|++|
T Consensus 302 ~~~~~~g~~l~sgs~D~~i~iwd~~~~--~~~~~~~~h~~~v~~v~~~~~g~------------~l~s~s~D~~i~vw 365 (410)
T 1vyh_C 302 KKSGKPGPFLLSGSRDKTIKMWDVSTG--MCLMTLVGHDNWVRGVLFHSGGK------------FILSCADDKTLRVW 365 (410)
T ss_dssp ------CCEEEEEETTSEEEEEETTTT--EEEEEEECCSSCEEEEEECSSSS------------CEEEEETTTEEEEE
T ss_pred cccCCCCCEEEEEeCCCeEEEEECCCC--ceEEEEECCCCcEEEEEEcCCCC------------EEEEEeCCCeEEEE
Confidence 568999999999999999876 67888999999999999999999 56677777777776
No 31
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=100.00 E-value=9.2e-41 Score=285.10 Aligned_cols=285 Identities=15% Similarity=0.140 Sum_probs=229.2
Q ss_pred ccCcCCcEEEEEecCC--EEEEccCCCcEEEEcCCc----ceecccCCCCCeeEEEEe--CCEEEEEeCCCeEEEEeecC
Q 047325 40 LVREEGHIYSLAASKD--LLYTGSDSKNIRVWKNLK----EFCGFKASSGLVKAIVIS--GEKIFTGHQDGKIRVWKISP 111 (368)
Q Consensus 40 ~~~h~~~i~~~~~~~~--~l~s~~~dg~i~iw~~~~----~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~vw~~~~ 111 (368)
+..|.++|++++|+++ +|++|+.|+.|++||+.. ....+..|...|.+++|+ +++|++++.||.|++||+++
T Consensus 4 ~~~~~~~i~~~~~s~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~ 83 (372)
T 1k8k_C 4 HSFLVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKG 83 (372)
T ss_dssp EESCSSCCCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEET
T ss_pred ecccCCCeEEEEECCCCCEEEEEeCCCEEEEEeCCCCcEEeeeeecCCCCcccEEEEeCCCCEEEEEcCCCeEEEEECCC
Confidence 4458999999999865 999999999999999875 456788999999999998 88999999999999999977
Q ss_pred CCccccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcCCCCEEEEEeCCCcEEEEEccCCeE---
Q 047325 112 KNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCGLLYTASWDRTFKVWRISDSKC--- 188 (368)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~--- 188 (368)
++..... .+.+|...|.+++|+|++++|++++.|+.|++||+..++.
T Consensus 84 ~~~~~~~------------------------------~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~ 133 (372)
T 1k8k_C 84 RTWKPTL------------------------------VILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWV 133 (372)
T ss_dssp TEEEEEE------------------------------ECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEE
T ss_pred CeeeeeE------------------------------EeecCCCceeEEEECCCCCEEEEEeCCCEEEEEEecCCCccee
Confidence 6522111 1123888999999999999999999999999999988762
Q ss_pred E-EEeecCCCceEEEEeCCCC-eEEEEcCCCeEEEEEcCCCCCC------------cccccceeeccccccEEEEEEcCC
Q 047325 189 L-ESVSAHDDAVNSVVSSSEG-LIFTGSADGTVKVWKREQHGKG------------TKHSLAQTLLKQECAVTALVVSSS 254 (368)
Q Consensus 189 ~-~~~~~~~~~v~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~------------~~~~~~~~~~~~~~~i~~~~~~~~ 254 (368)
. .....|...|.+++|+|++ ++++++.||.|++||++..... ........+..|...+.+++|+|+
T Consensus 134 ~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 213 (372)
T 1k8k_C 134 CKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSAN 213 (372)
T ss_dssp EEEECTTCCSCEEEEEECTTSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSS
T ss_pred eeeeecccCCCeeEEEEcCCCCEEEEEcCCCCEEEEEcccccccccccccccccccchhhheEecCCCCCeEEEEEECCC
Confidence 2 3335688999999999999 9999999999999997532110 112345566688899999999999
Q ss_pred CCEEEEecCCCcEEEEeCCCccccceeeeccceEE--EEEEeCCCEEEEeeCCCeEEEEecCC--Cceeee---------
Q 047325 255 RSIVYCGSSDGLVNFWEREKQLSHGGVLKGHKLAV--LCLAAAGKLVFSGSADKTICVWRRDG--AIHTCL--------- 321 (368)
Q Consensus 255 ~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~~~dg~i~iw~~~~--~~~~~~--------- 321 (368)
+++|++++.||.|++||++++... ..+..|...+ +++++++.+|++| .|+.|++|++.. +....+
T Consensus 214 ~~~l~~~~~d~~i~i~d~~~~~~~-~~~~~~~~~v~~~~~~~~~~~l~~~-~d~~i~i~~~~~~~~~~~~~~~~~~~~~~ 291 (372)
T 1k8k_C 214 GSRVAWVSHDSTVCLADADKKMAV-ATLASETLPLLAVTFITESSLVAAG-HDCFPVLFTYDSAAGKLSFGGRLDVPKQS 291 (372)
T ss_dssp SSEEEEEETTTEEEEEEGGGTTEE-EEEECSSCCEEEEEEEETTEEEEEE-TTSSCEEEEEETTTTEEEECCCCCCC---
T ss_pred CCEEEEEeCCCEEEEEECCCCcee-EEEccCCCCeEEEEEecCCCEEEEE-eCCeEEEEEccCcCceEEEeeccCccccc
Confidence 999999999999999999987655 4556666555 5667788888887 899999999977 321111
Q ss_pred ---------------------------Eee-eccccCeeEEEEe-cCC---eeeecCCcceEEEEEeeCCcccccccCC
Q 047325 322 ---------------------------SVL-TGHTGPVKCLAVE-EDR---DSSSSTSSCAQRWIVYSGSLDKSDDDVH 368 (368)
Q Consensus 322 ---------------------------~~~-~~h~~~v~~l~~~-~~~---~~~~~~~~~~~~w~l~sg~~D~~v~i~h 368 (368)
..+ .+|..+|++++|. +++ . .|+||+.||.|++|.
T Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~g~~~~------------~l~s~~~Dg~i~~W~ 358 (372)
T 1k8k_C 292 SQRGLTARERFQNLDKKASSEGSAAAGAGLDSLHKNSVSQISVLSGGKAKCS------------QFCTTGMDGGMSIWD 358 (372)
T ss_dssp -----CHHHHHHHCCCCC---------CCCSSSSSSCEEEEEEEESTTTSCS------------EEEEEETTSEEEEEE
T ss_pred hhhhcchhhhhhhcccccccccCccccccccccccCCcceeEEecCCCccee------------eEEEecCCCceEEEE
Confidence 223 4899999999966 665 7 688899999999883
No 32
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.8e-41 Score=291.83 Aligned_cols=287 Identities=14% Similarity=0.176 Sum_probs=233.6
Q ss_pred cCcCCcEEEEEecCC--EEEEccCCCcEEEEcCCc------ceecccCCCCCeeEEEEe---CCEEEEEeCCCeEEEEee
Q 047325 41 VREEGHIYSLAASKD--LLYTGSDSKNIRVWKNLK------EFCGFKASSGLVKAIVIS---GEKIFTGHQDGKIRVWKI 109 (368)
Q Consensus 41 ~~h~~~i~~~~~~~~--~l~s~~~dg~i~iw~~~~------~~~~~~~~~~~v~~~~~~---~~~l~s~~~dg~i~vw~~ 109 (368)
..|.+.|.+++|+++ +|++|+.||.|++||+.. ....+..|...|.+++|+ +++|++++.||.|++||+
T Consensus 64 ~~~~~~v~~~~~s~~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~ 143 (416)
T 2pm9_A 64 LQVDSKFNDLDWSHNNKIIAGALDNGSLELYSTNEANNAINSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDM 143 (416)
T ss_dssp CCCSSCEEEEEECSSSSCEEEEESSSCEEEECCSSTTSCCCEEEECCCSSSCCCEEEECSSSTTBEEEECSSSCEEBCBT
T ss_pred EecCCceEEEEECCCCCeEEEEccCCeEEEeecccccccccchhhccCCccceEEEEEcCCCCCEEEEEcCCCeEEEEEC
Confidence 368999999999755 999999999999999875 466788999999999998 579999999999999999
Q ss_pred cCCCccccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcCC-CCEEEEEeCCCcEEEEEccCCeE
Q 047325 110 SPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQD-CGLLYTASWDRTFKVWRISDSKC 188 (368)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~d~~i~iwd~~~~~~ 188 (368)
.+.+......... ....+.+|...|.+++|+|+ +.+|++++.|+.|++||+++++.
T Consensus 144 ~~~~~~~~~~~~~-----------------------~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~ 200 (416)
T 2pm9_A 144 NKCTESPSNYTPL-----------------------TPGQSMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAKKE 200 (416)
T ss_dssp TTTSSCTTTCCCB-----------------------CCCCSCCSSCCCCEEEECSSCTTEEEEESSSSCEEEEETTTTEE
T ss_pred CCCcccccccccc-----------------------ccccccCCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECCCCCc
Confidence 8876211000000 00011238899999999998 78999999999999999999999
Q ss_pred EEEeecC------CCceEEEEeCCCC--eEEEEcCCC---eEEEEEcCCCCCCcccccceeec-cccccEEEEEEcC-CC
Q 047325 189 LESVSAH------DDAVNSVVSSSEG--LIFTGSADG---TVKVWKREQHGKGTKHSLAQTLL-KQECAVTALVVSS-SR 255 (368)
Q Consensus 189 ~~~~~~~------~~~v~~~~~~~~~--~l~~~~~dg---~i~i~d~~~~~~~~~~~~~~~~~-~~~~~i~~~~~~~-~~ 255 (368)
+..+..+ ...|.+++|+|++ ++++++.|+ .|++||++.... +...+. .|...|.+++|+| ++
T Consensus 201 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~~-----~~~~~~~~~~~~v~~~~~s~~~~ 275 (416)
T 2pm9_A 201 VIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNANT-----PLQTLNQGHQKGILSLDWCHQDE 275 (416)
T ss_dssp EEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEEETTSTTS-----CSBCCCSCCSSCEEEEEECSSCS
T ss_pred ceEEeccccccccCCceEEEEECCCCCCEEEEEECCCCCceEEEEeCCCCCC-----CcEEeecCccCceeEEEeCCCCC
Confidence 9988876 7889999999997 899999998 999999987532 345555 7899999999999 99
Q ss_pred CEEEEecCCCcEEEEeCCCccccceeeeccceEE--EEEEeCC-CEEEEeeCCCeEEEEecCCCceeeeE----------
Q 047325 256 SIVYCGSSDGLVNFWEREKQLSHGGVLKGHKLAV--LCLAAAG-KLVFSGSADKTICVWRRDGAIHTCLS---------- 322 (368)
Q Consensus 256 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~--~~~~~~~-~~l~~~~~dg~i~iw~~~~~~~~~~~---------- 322 (368)
++|++++.||.|++||+++++.. ..+..|...+ ++++|++ .+|++++.||.|++|++.........
T Consensus 276 ~~l~s~~~dg~v~~wd~~~~~~~-~~~~~~~~~v~~~~~s~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~ 354 (416)
T 2pm9_A 276 HLLLSSGRDNTVLLWNPESAEQL-SQFPARGNWCFKTKFAPEAPDLFACASFDNKIEVQTLQNLTNTLDEQETETKQQES 354 (416)
T ss_dssp SCEEEEESSSEEEEECSSSCCEE-EEEECSSSCCCCEEECTTCTTEEEECCSSSEEEEEESCCCCCSSCC----------
T ss_pred CeEEEEeCCCCEEEeeCCCCccc-eeecCCCCceEEEEECCCCCCEEEEEecCCcEEEEEccCCCCCcccccccccccCC
Confidence 99999999999999999987654 5566777666 5566777 89999999999999999765321110
Q ss_pred -----------------------eeeccccCeeEEEEecCCeeeecCCcceEEEEEeeCCcccccccCC
Q 047325 323 -----------------------VLTGHTGPVKCLAVEEDRDSSSSTSSCAQRWIVYSGSLDKSDDDVH 368 (368)
Q Consensus 323 -----------------------~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~w~l~sg~~D~~v~i~h 368 (368)
....|..++++++|+|+|+ +|++|+.|++|++|.
T Consensus 355 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~------------~la~~~~d~~v~~w~ 411 (416)
T 2pm9_A 355 ETDFWNNVSREESKEKPSVFHLQAPTWYGEPSPAAHWAFGGK------------LVQITPDGKGVSITN 411 (416)
T ss_dssp ------------CCSCCCSSCCCCCSTTCCCSCCCEEETTTE------------EECBCTTSSCBCCBC
T ss_pred cccccccccccccccccccccccCCccccCCccceEEeeCCe------------EEEEeCCCCeEEEEE
Confidence 0111677889999999999 788999999999994
No 33
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=100.00 E-value=6e-41 Score=284.61 Aligned_cols=281 Identities=15% Similarity=0.197 Sum_probs=223.4
Q ss_pred eeeccCcCCcEEEEEecCC---EEEEccC---CCcEEEEcCCccee---cccCCCCCeeEEEEe-----CCEEEEEeCCC
Q 047325 37 IGSLVREEGHIYSLAASKD---LLYTGSD---SKNIRVWKNLKEFC---GFKASSGLVKAIVIS-----GEKIFTGHQDG 102 (368)
Q Consensus 37 ~~~~~~h~~~i~~~~~~~~---~l~s~~~---dg~i~iw~~~~~~~---~~~~~~~~v~~~~~~-----~~~l~s~~~dg 102 (368)
...+.+|.+.|.+++|+++ ++++|+. ||.|++||+.+... ....|...|.+++|+ +++|++|+.||
T Consensus 11 ~~~~~~h~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg 90 (357)
T 3i2n_A 11 AHIQKGFNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLKLLREIEKAKPIKCGTFGATSLQQRYLATGDFGG 90 (357)
T ss_dssp EEEEEECSSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSSEEEEEEEEESSCEEEEECTTCCTTTCCEEEEETTS
T ss_pred hhhccCCCCceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCcccceeeecccCcEEEEEEcCCCCCCceEEEecCCC
Confidence 3456789999999999864 6667776 99999999875422 233789999999997 27899999999
Q ss_pred eEEEEeecCCCccccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEE------cCCCCEEEEEeCCC
Q 047325 103 KIRVWKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSL------DQDCGLLYTASWDR 176 (368)
Q Consensus 103 ~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~------~~~~~~l~~~~~d~ 176 (368)
.|++||+.+++.. ...+.+|...|.++.| +|++++|++++.|+
T Consensus 91 ~i~iwd~~~~~~~-------------------------------~~~~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~ 139 (357)
T 3i2n_A 91 NLHIWNLEAPEMP-------------------------------VYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDG 139 (357)
T ss_dssp CEEEECTTSCSSC-------------------------------SEEECCCSSCEEEEEEESGGGCC-CCCEEEEEETTS
T ss_pred eEEEEeCCCCCcc-------------------------------EEEEEecccceEEEeeccccccCCCccEEEEEeCCC
Confidence 9999999877511 1123349999999955 67899999999999
Q ss_pred cEEEEEccCCe-EEEEeecCCC----ceEEEE----eCCCC-eEEEEcCCCeEEEEEcCCCCCCcccccceeeccccccE
Q 047325 177 TFKVWRISDSK-CLESVSAHDD----AVNSVV----SSSEG-LIFTGSADGTVKVWKREQHGKGTKHSLAQTLLKQECAV 246 (368)
Q Consensus 177 ~i~iwd~~~~~-~~~~~~~~~~----~v~~~~----~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~i 246 (368)
.|++||+++++ ++..+..|.. .+.+++ |+|++ .+++++.||.|++||++... ......+...+
T Consensus 140 ~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~-------~~~~~~~~~~v 212 (357)
T 3i2n_A 140 TVKVWDPRQKDDPVANMEPVQGENKRDCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRNMA-------LRWETNIKNGV 212 (357)
T ss_dssp CEEEECTTSCSSCSEEECCCTTSCCCCEEEEEEECCCC-CCCEEEEEETTSEEEEEETTTTE-------EEEEEECSSCE
T ss_pred eEEEEeCCCCCCcceeccccCCCCCCceEEEEEEeccCCCCCEEEEEccCCeEEEEECccCc-------eeeecCCCCce
Confidence 99999999887 6777766554 788888 77888 99999999999999998652 23445678899
Q ss_pred EEEEEcC---CCCEEEEecCCCcEEEEeCCCcccccee----eeccceEEEE--EEeCCC-EEEEeeCCCeEEEEecCCC
Q 047325 247 TALVVSS---SRSIVYCGSSDGLVNFWEREKQLSHGGV----LKGHKLAVLC--LAAAGK-LVFSGSADKTICVWRRDGA 316 (368)
Q Consensus 247 ~~~~~~~---~~~~l~~~~~dg~i~i~d~~~~~~~~~~----~~~~~~~~~~--~~~~~~-~l~~~~~dg~i~iw~~~~~ 316 (368)
.+++|+| ++++|++++.||.|++||+++....... ..+|...+.+ ++|+++ +|++|+.||.|++||++..
T Consensus 213 ~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~ 292 (357)
T 3i2n_A 213 CSLEFDRKDISMNKLVATSLEGKFHVFDMRTQHPTKGFASVSEKAHKSTVWQVRHLPQNRELFLTAGGAGGLHLWKYEYP 292 (357)
T ss_dssp EEEEESCSSSSCCEEEEEESTTEEEEEEEEEEETTTEEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEEEECC
T ss_pred EEEEcCCCCCCCCEEEEECCCCeEEEEeCcCCCcccceeeeccCCCcCCEEEEEECCCCCcEEEEEeCCCcEEEeecCCC
Confidence 9999999 9999999999999999999876554322 2367777754 556777 8999999999999998753
Q ss_pred c-----------------eeeeEeeeccccCeeEEEEecCCeeeecCCcceEEEEEe-eCCcccccccC
Q 047325 317 I-----------------HTCLSVLTGHTGPVKCLAVEEDRDSSSSTSSCAQRWIVY-SGSLDKSDDDV 367 (368)
Q Consensus 317 ~-----------------~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~w~l~-sg~~D~~v~i~ 367 (368)
. ...+..+.+|..+|++++|+|++.. |+ +|+.|+.|++|
T Consensus 293 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~------------l~~s~~~d~~i~iw 349 (357)
T 3i2n_A 293 IQRSKKDSEGIEMGVAGSVSLLQNVTLSTQPISSLDWSPDKRG------------LCVCSSFDQTVRVL 349 (357)
T ss_dssp SCC--CCTTSCCCCCCCEEEEEEEEECCSSCEEEEEECSSSTT------------EEEEEETTSEEEEE
T ss_pred cccccccCCCCccccccccceeeccccCCCCeeEEEEcCCCCe------------EEEEecCCCcEEEE
Confidence 2 2467788899999999999999994 44 67777777776
No 34
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=100.00 E-value=6.8e-40 Score=286.32 Aligned_cols=259 Identities=26% Similarity=0.433 Sum_probs=225.4
Q ss_pred ceeeeccCcCCc-EEEEEecCCEEEEccCCCcEEEEcCCc--ceecccCCCCCeeEEEEeCCEEEEEeCCCeEEEEeecC
Q 047325 35 GLIGSLVREEGH-IYSLAASKDLLYTGSDSKNIRVWKNLK--EFCGFKASSGLVKAIVISGEKIFTGHQDGKIRVWKISP 111 (368)
Q Consensus 35 ~~~~~~~~h~~~-i~~~~~~~~~l~s~~~dg~i~iw~~~~--~~~~~~~~~~~v~~~~~~~~~l~s~~~dg~i~vw~~~~ 111 (368)
.....+.+|.+. +.++.+++++|++|+.||+|++||+.+ ....+.+|...|.++.++++++++|+.||+|++||+.+
T Consensus 109 ~~~~~l~~h~~~v~~~~~~~g~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~l~s~~~dg~i~vwd~~~ 188 (445)
T 2ovr_B 109 KSPKVLKGHDDHVITCLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRDNIIISGSTDRTLKVWNAET 188 (445)
T ss_dssp CCCEEEECSTTSCEEEEEEETTEEEEEETTSCEEEEETTTCCEEEECCCCSSCEEEEEEETTEEEEEETTSCEEEEETTT
T ss_pred ceeEEecccCCCcEEEEEEcCCEEEEEECCCcEEEEECCCCcEEEEEcCCCCCEEEEEecCCEEEEEeCCCeEEEEECCc
Confidence 345678899987 589999999999999999999999864 45678899999999999999999999999999999987
Q ss_pred CCccccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcCCCCEEEEEeCCCcEEEEEccCCeEEEE
Q 047325 112 KNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCGLLYTASWDRTFKVWRISDSKCLES 191 (368)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~ 191 (368)
++... .+.+|...|.++.++ ++.+++|+.||.|++||+.+++.+..
T Consensus 189 ~~~~~--------------------------------~~~~h~~~v~~~~~~--~~~l~s~s~dg~i~~wd~~~~~~~~~ 234 (445)
T 2ovr_B 189 GECIH--------------------------------TLYGHTSTVRCMHLH--EKRVVSGSRDATLRVWDIETGQCLHV 234 (445)
T ss_dssp TEEEE--------------------------------EECCCSSCEEEEEEE--TTEEEEEETTSEEEEEESSSCCEEEE
T ss_pred CcEEE--------------------------------EECCCCCcEEEEEec--CCEEEEEeCCCEEEEEECCCCcEEEE
Confidence 75322 233489999999996 46899999999999999999999999
Q ss_pred eecCCCceEEEEeCCCCeEEEEcCCCeEEEEEcCCCCCCcccccceeeccccccEEEEEEcCCCCEEEEecCCCcEEEEe
Q 047325 192 VSAHDDAVNSVVSSSEGLIFTGSADGTVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSSSRSIVYCGSSDGLVNFWE 271 (368)
Q Consensus 192 ~~~~~~~v~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d 271 (368)
+.+|...|.++.+ ....+++++.||.|++||++.. .....+..|...+.+++| +++++++++.||.|++||
T Consensus 235 ~~~~~~~v~~~~~-~~~~l~~~~~dg~i~iwd~~~~------~~~~~~~~~~~~v~~~~~--~~~~l~~~~~d~~i~i~d 305 (445)
T 2ovr_B 235 LMGHVAAVRCVQY-DGRRVVSGAYDFMVKVWDPETE------TCLHTLQGHTNRVYSLQF--DGIHVVSGSLDTSIRVWD 305 (445)
T ss_dssp EECCSSCEEEEEE-CSSCEEEEETTSCEEEEEGGGT------EEEEEECCCSSCEEEEEE--CSSEEEEEETTSCEEEEE
T ss_pred EcCCcccEEEEEE-CCCEEEEEcCCCEEEEEECCCC------cEeEEecCCCCceEEEEE--CCCEEEEEeCCCeEEEEE
Confidence 9999999999999 2339999999999999999865 356677789999999999 788999999999999999
Q ss_pred CCCccccceeeeccceEEEEEEeCCCEEEEeeCCCeEEEEecCCCceeeeEeeec---cccCeeEEEEecC
Q 047325 272 REKQLSHGGVLKGHKLAVLCLAAAGKLVFSGSADKTICVWRRDGAIHTCLSVLTG---HTGPVKCLAVEED 339 (368)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~---h~~~v~~l~~~~~ 339 (368)
++++... ..+.+|...+.++.+++++|++|+.||.|++||+.+. +.+..+.. |..+|++++|+++
T Consensus 306 ~~~~~~~-~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~vwd~~~~--~~~~~~~~~~~~~~~v~~~~~~~~ 373 (445)
T 2ovr_B 306 VETGNCI-HTLTGHQSLTSGMELKDNILVSGNADSTVKIWDIKTG--QCLQTLQGPNKHQSAVTCLQFNKN 373 (445)
T ss_dssp TTTCCEE-EEECCCCSCEEEEEEETTEEEEEETTSCEEEEETTTC--CEEEEECSTTSCSSCEEEEEECSS
T ss_pred CCCCCEE-EEEcCCcccEEEEEEeCCEEEEEeCCCeEEEEECCCC--cEEEEEccCCCCCCCEEEEEECCC
Confidence 9987655 5667888999999999999999999999999999776 56667765 8899999999753
No 35
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=100.00 E-value=1.5e-40 Score=289.57 Aligned_cols=271 Identities=27% Similarity=0.420 Sum_probs=230.2
Q ss_pred eccCcCCcEEEEEecCCEEEEccCCCcEEEEcCCc--ceecccCCCCCeeEEEEeCCEEEEEeCCCeEEEEeecCCCccc
Q 047325 39 SLVREEGHIYSLAASKDLLYTGSDSKNIRVWKNLK--EFCGFKASSGLVKAIVISGEKIFTGHQDGKIRVWKISPKNQSV 116 (368)
Q Consensus 39 ~~~~h~~~i~~~~~~~~~l~s~~~dg~i~iw~~~~--~~~~~~~~~~~v~~~~~~~~~l~s~~~dg~i~vw~~~~~~~~~ 116 (368)
...+|...|.++++++++|++|+.||+|++||..+ ....+.+|...|.++++++++|++|+.||.|++||+.+++...
T Consensus 128 ~~~~~~~~v~~~~~d~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~l~sg~~dg~i~vwd~~~~~~~~ 207 (435)
T 1p22_A 128 CRSETSKGVYCLQYDDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQYDERVIITGSSDSTVRVWDVNTGEMLN 207 (435)
T ss_dssp CCCSSCCCEEEEECCSSEEEEEESSSCEEEEESSSCCEEEEECCCSSCEEEEECCSSEEEEEETTSCEEEEESSSCCEEE
T ss_pred cccCCCCcEEEEEECCCEEEEEeCCCeEEEEeCCCCeEEEEEcCCCCcEEEEEECCCEEEEEcCCCeEEEEECCCCcEEE
Confidence 34567788999999999999999999999999874 4567889999999999999999999999999999998876422
Q ss_pred cccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcCCCCEEEEEeCCCcEEEEEccCCeEE---EEee
Q 047325 117 HKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCGLLYTASWDRTFKVWRISDSKCL---ESVS 193 (368)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~---~~~~ 193 (368)
.+.+|...|.+++|++ ..+++|+.||.|++||+.+++.. ..+.
T Consensus 208 --------------------------------~~~~h~~~v~~l~~~~--~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~ 253 (435)
T 1p22_A 208 --------------------------------TLIHHCEAVLHLRFNN--GMMVTCSKDRSIAVWDMASPTDITLRRVLV 253 (435)
T ss_dssp --------------------------------EECCCCSCEEEEECCT--TEEEEEETTSCEEEEECSSSSCCEEEEEEC
T ss_pred --------------------------------EEcCCCCcEEEEEEcC--CEEEEeeCCCcEEEEeCCCCCCceeeeEec
Confidence 2234889999999974 59999999999999999887655 6778
Q ss_pred cCCCceEEEEeCCCCeEEEEcCCCeEEEEEcCCCCCCcccccceeeccccccEEEEEEcCCCCEEEEecCCCcEEEEeCC
Q 047325 194 AHDDAVNSVVSSSEGLIFTGSADGTVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSSSRSIVYCGSSDGLVNFWERE 273 (368)
Q Consensus 194 ~~~~~v~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~ 273 (368)
+|...|.++.+ ....+++|+.||.|++||++.. .....+..|...+.++.+ +++++++|+.||.|++||++
T Consensus 254 ~~~~~v~~~~~-~~~~l~s~~~dg~i~vwd~~~~------~~~~~~~~~~~~v~~~~~--~~~~l~~g~~dg~i~iwd~~ 324 (435)
T 1p22_A 254 GHRAAVNVVDF-DDKYIVSASGDRTIKVWNTSTC------EFVRTLNGHKRGIACLQY--RDRLVVSGSSDNTIRLWDIE 324 (435)
T ss_dssp CCSSCEEEEEE-ETTEEEEEETTSEEEEEETTTC------CEEEEEECCSSCEEEEEE--ETTEEEEEETTSCEEEEETT
T ss_pred CCCCcEEEEEe-CCCEEEEEeCCCeEEEEECCcC------cEEEEEcCCCCcEEEEEe--CCCEEEEEeCCCeEEEEECC
Confidence 89999999999 2339999999999999999876 346677789999999999 46899999999999999999
Q ss_pred CccccceeeeccceEEEEEEeCCCEEEEeeCCCeEEEEecCCCce-------eeeEeeeccccCeeEEEEecCCeeeecC
Q 047325 274 KQLSHGGVLKGHKLAVLCLAAAGKLVFSGSADKTICVWRRDGAIH-------TCLSVLTGHTGPVKCLAVEEDRDSSSST 346 (368)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~-------~~~~~~~~h~~~v~~l~~~~~~~~~~~~ 346 (368)
++... ..+.+|...+.++.+++.+|++|+.||.|++||+..... .++..+.+|.++|++++| ++.
T Consensus 325 ~~~~~-~~~~~h~~~v~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~----- 396 (435)
T 1p22_A 325 CGACL-RVLEGHEELVRCIRFDNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQF--DEF----- 396 (435)
T ss_dssp TCCEE-EEECCCSSCEEEEECCSSEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECCCSSCCCCEEE--CSS-----
T ss_pred CCCEE-EEEeCCcCcEEEEEecCCEEEEEeCCCcEEEEECCCCCCccccccchheeeccCCCCCeEEEEe--CCC-----
Confidence 87655 567789999999999999999999999999999865421 167788899999999999 555
Q ss_pred CcceEEEEEeeCCcccccccC
Q 047325 347 SSCAQRWIVYSGSLDKSDDDV 367 (368)
Q Consensus 347 ~~~~~~w~l~sg~~D~~v~i~ 367 (368)
.|++|+.||+|++|
T Consensus 397 -------~l~s~s~Dg~i~iw 410 (435)
T 1p22_A 397 -------QIVSSSHDDTILIW 410 (435)
T ss_dssp -------CEEECCSSSEEEEE
T ss_pred -------EEEEEeCCCEEEEE
Confidence 46677777777776
No 36
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=100.00 E-value=2.7e-40 Score=277.63 Aligned_cols=237 Identities=16% Similarity=0.192 Sum_probs=197.9
Q ss_pred ccCcCCcEEEEEecCC-EEEEccCCCcEEEEcCCcce------ecccCCCCCeeEEEEe--CCEEEEEeCCCeEEEEeec
Q 047325 40 LVREEGHIYSLAASKD-LLYTGSDSKNIRVWKNLKEF------CGFKASSGLVKAIVIS--GEKIFTGHQDGKIRVWKIS 110 (368)
Q Consensus 40 ~~~h~~~i~~~~~~~~-~l~s~~~dg~i~iw~~~~~~------~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~vw~~~ 110 (368)
...|...|.+++|+++ .|++|+.||+|+|||+.+.. ....+|...|.+++|+ +++|++|+.||+|++||++
T Consensus 78 ~~~~~~~v~~~~~s~d~~l~~~s~dg~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg~~l~sgs~d~~i~iwd~~ 157 (344)
T 4gqb_B 78 GVQTEAGVADLTWVGERGILVASDSGAVELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLA 157 (344)
T ss_dssp EEEESSCEEEEEEETTTEEEEEETTSEEEEEEECTTSSCEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETT
T ss_pred eeccCCCEEEEEEeCCCeEEEEECCCEEEEEeccCCCceeEeeccccCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECC
Confidence 3456788999999877 89999999999999986431 2345899999999998 8899999999999999998
Q ss_pred CCCccccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcCCCC-EEEEEeCCCcEEEEEccCCeEE
Q 047325 111 PKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCG-LLYTASWDRTFKVWRISDSKCL 189 (368)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~i~iwd~~~~~~~ 189 (368)
+++.. ..+.+|...|++++|+|++. +|++++.|+.|++||++++++.
T Consensus 158 ~~~~~--------------------------------~~~~~h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~ 205 (344)
T 4gqb_B 158 QQVVL--------------------------------SSYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPA 205 (344)
T ss_dssp TTEEE--------------------------------EEECCCSSCEEEEEECSSCTTEEEEEETTSCEEEEETTSSSCE
T ss_pred CCcEE--------------------------------EEEcCcCCceEEEEecCCCCCceeeecccccccccccccccee
Confidence 77532 23445999999999999874 7899999999999999999988
Q ss_pred EEee--cCCCceEEEEeCCCC--eEEEEcCCCeEEEEEcCCCCCCcccccceeeccccccEEEEEEcCCC-CEEEEecCC
Q 047325 190 ESVS--AHDDAVNSVVSSSEG--LIFTGSADGTVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSSSR-SIVYCGSSD 264 (368)
Q Consensus 190 ~~~~--~~~~~v~~~~~~~~~--~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~d 264 (368)
..+. .+...+.+++|+|++ ++++|+.||.|++||++.. .++..+.+|...|++++|+|++ ++|++|+.|
T Consensus 206 ~~~~~~~~~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~~~------~~~~~~~~h~~~v~~v~fsp~g~~~lasgs~D 279 (344)
T 4gqb_B 206 SQIGCSAPGYLPTSLAWHPQQSEVFVFGDENGTVSLVDTKST------SCVLSSAVHSQCVTGLVFSPHSVPFLASLSED 279 (344)
T ss_dssp EECC----CCCEEEEEECSSCTTEEEEEETTSEEEEEESCC--------CCEEEECCSSCEEEEEECSSSSCCEEEEETT
T ss_pred eeeecceeeccceeeeecCCCCcceEEeccCCcEEEEECCCC------cEEEEEcCCCCCEEEEEEccCCCeEEEEEeCC
Confidence 8774 355678999999865 7889999999999999876 3567788999999999999987 589999999
Q ss_pred CcEEEEeCCCccccceeeeccceEEEEEE--eCCC-EEEEeeCCCeEEEEecCCC
Q 047325 265 GLVNFWEREKQLSHGGVLKGHKLAVLCLA--AAGK-LVFSGSADKTICVWRRDGA 316 (368)
Q Consensus 265 g~i~i~d~~~~~~~~~~~~~~~~~~~~~~--~~~~-~l~~~~~dg~i~iw~~~~~ 316 (368)
+.|++||+++++.. ...+|...|.+++ |+++ +|++|+.||+|++|++.+.
T Consensus 280 ~~i~vwd~~~~~~~--~~~~H~~~V~~v~~sp~~~~llas~s~D~~v~~w~v~~~ 332 (344)
T 4gqb_B 280 CSLAVLDSSLSELF--RSQAHRDFVRDATWSPLNHSLLTTVGWDHQVVHHVVPTE 332 (344)
T ss_dssp SCEEEECTTCCEEE--EECCCSSCEEEEEECSSSTTEEEEEETTSCEEEEECCC-
T ss_pred CeEEEEECCCCcEE--EEcCCCCCEEEEEEeCCCCeEEEEEcCCCeEEEEECCCC
Confidence 99999999987654 4678988886665 5665 6789999999999998764
No 37
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=100.00 E-value=1.1e-39 Score=286.76 Aligned_cols=279 Identities=23% Similarity=0.327 Sum_probs=232.0
Q ss_pred eeeeccCcCCc-EEEEEecCCEEEEccCCCcEEEEcCCc--ceecccCCCCCeeEEEEe-CCEEEEEeCCCeEEEEeecC
Q 047325 36 LIGSLVREEGH-IYSLAASKDLLYTGSDSKNIRVWKNLK--EFCGFKASSGLVKAIVIS-GEKIFTGHQDGKIRVWKISP 111 (368)
Q Consensus 36 ~~~~~~~h~~~-i~~~~~~~~~l~s~~~dg~i~iw~~~~--~~~~~~~~~~~v~~~~~~-~~~l~s~~~dg~i~vw~~~~ 111 (368)
....+.+|.+. +.++.+++++|++|+.||+|++||+.+ .+..+.+|.+.|.+++|+ +.+|++|+.||+|++||+++
T Consensus 113 ~~~~l~~h~~~v~~~~~~~~~~l~sgs~dg~i~vwd~~~~~~~~~~~~h~~~V~~l~~~~~~~l~s~s~dg~i~vwd~~~ 192 (464)
T 3v7d_B 113 QRTTLRGHMTSVITCLQFEDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGGILVSGSTDRTVRVWDIKK 192 (464)
T ss_dssp EEEEEECCSSSCEEEEEEETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECSTTEEEEEETTSCEEEEETTT
T ss_pred ceEEEcCCCCCcEEEEEECCCEEEEEcCCCcEEEEECCCCcEEEEEeCCCcCEEEEEEcCCCEEEEEeCCCCEEEEECCC
Confidence 45678999988 588999999999999999999999874 456778999999999998 55999999999999999987
Q ss_pred CCccccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEc--CCCCEEEEEeCCCcEEEEEccCCeE-
Q 047325 112 KNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLD--QDCGLLYTASWDRTFKVWRISDSKC- 188 (368)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~~~l~~~~~d~~i~iwd~~~~~~- 188 (368)
++... .+.+|...|.+++|+ ++++++++++.|+.|++||+++++.
T Consensus 193 ~~~~~--------------------------------~~~~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~ 240 (464)
T 3v7d_B 193 GCCTH--------------------------------VFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSV 240 (464)
T ss_dssp TEEEE--------------------------------EECCCSSCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC
T ss_pred CcEEE--------------------------------EECCCCCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCccc
Confidence 75322 233499999999998 5778999999999999999987652
Q ss_pred ----------------------EEEeecCCCceEEEEeCCCC-eEEEEcCCCeEEEEEcCCCCCCcccccceeecccccc
Q 047325 189 ----------------------LESVSAHDDAVNSVVSSSEG-LIFTGSADGTVKVWKREQHGKGTKHSLAQTLLKQECA 245 (368)
Q Consensus 189 ----------------------~~~~~~~~~~v~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~ 245 (368)
+..+.+|...+.++. +++ .+++++.|+.|++||++.. .....+.+|...
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~--~~~~~l~~~~~d~~i~vwd~~~~------~~~~~~~~~~~~ 312 (464)
T 3v7d_B 241 PDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVS--GHGNIVVSGSYDNTLIVWDVAQM------KCLYILSGHTDR 312 (464)
T ss_dssp ------CCSSEEESCGGGCTTEEEEECCCSSCEEEEE--EETTEEEEEETTSCEEEEETTTT------EEEEEECCCSSC
T ss_pred ccccccCCcceEeeccCCCeEEEEEccCccceEEEEc--CCCCEEEEEeCCCeEEEEECCCC------cEEEEecCCCCC
Confidence 556778888888874 455 9999999999999999865 356677889999
Q ss_pred EEEEEEcCCCCEEEEecCCCcEEEEeCCCccccceeeeccceEEEEEEeCCCEEEEeeCCCeEEEEecCCCceeeeEeee
Q 047325 246 VTALVVSSSRSIVYCGSSDGLVNFWEREKQLSHGGVLKGHKLAVLCLAAAGKLVFSGSADKTICVWRRDGAIHTCLSVLT 325 (368)
Q Consensus 246 i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~ 325 (368)
|.+++|+|+++++++|+.||.|++||+++++.. ..+.+|...+.++.+++++|++|+.||.|++||+.+. ......
T Consensus 313 v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~-~~~~~h~~~v~~~~~~~~~l~s~s~dg~v~vwd~~~~--~~~~~~- 388 (464)
T 3v7d_B 313 IYSTIYDHERKRCISASMDTTIRIWDLENGELM-YTLQGHTALVGLLRLSDKFLVSAAADGSIRGWDANDY--SRKFSY- 388 (464)
T ss_dssp EEEEEEETTTTEEEEEETTSCEEEEETTTTEEE-EEECCCSSCEEEEEECSSEEEEEETTSEEEEEETTTC--CEEEEE-
T ss_pred EEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEE-EEEeCCCCcEEEEEEcCCEEEEEeCCCcEEEEECCCC--ceeeee-
Confidence 999999999999999999999999999987655 5677899999999999999999999999999999876 333333
Q ss_pred ccccCeeEEEEecCCeeeecCC-cceEEEEEeeC
Q 047325 326 GHTGPVKCLAVEEDRDSSSSTS-SCAQRWIVYSG 358 (368)
Q Consensus 326 ~h~~~v~~l~~~~~~~~~~~~~-~~~~~w~l~sg 358 (368)
.|...+..++|++++.++++++ +.+++|.+.+|
T Consensus 389 ~~~~~~~~~~~~~~~~~l~~~~dg~i~iwd~~~g 422 (464)
T 3v7d_B 389 HHTNLSAITTFYVSDNILVSGSENQFNIYNLRSG 422 (464)
T ss_dssp ECTTCCCEEEEEECSSEEEEEETTEEEEEETTTC
T ss_pred cCCCCccEEEEEeCCCEEEEecCCeEEEEECCCC
Confidence 3677888999999999655442 34555554443
No 38
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=100.00 E-value=6.6e-40 Score=275.97 Aligned_cols=243 Identities=21% Similarity=0.359 Sum_probs=208.7
Q ss_pred cCCCceeeeccCcCCcEEEEEecCC--EEEEccCCCcEEEEcCCcc------eecccCCCCCeeEEEEe-CCEEEEEeCC
Q 047325 31 LPQNGLIGSLVREEGHIYSLAASKD--LLYTGSDSKNIRVWKNLKE------FCGFKASSGLVKAIVIS-GEKIFTGHQD 101 (368)
Q Consensus 31 ~~~~~~~~~~~~h~~~i~~~~~~~~--~l~s~~~dg~i~iw~~~~~------~~~~~~~~~~v~~~~~~-~~~l~s~~~d 101 (368)
......+..+..|...|.+++|+++ +|++|+.|+.|++|++... ...+.+|.+.|.++.|. ++.+++++.|
T Consensus 84 ~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~l~s~s~d 163 (340)
T 1got_B 84 SYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGD 163 (340)
T ss_dssp TTTCCEEEEEECSSSCEEEEEECTTSSEEEEEETTCEEEEEETTTCSBSCEEEEEEECCSSCEEEEEEEETTEEEEEETT
T ss_pred CCCCCcceEeecCCccEEEEEECCCCCEEEEEeCCCeEEEEECccCCCcceeEEEecCCCccEEEEEECCCCcEEEEECC
Confidence 4556677788899999999999865 9999999999999998642 34577899999999998 7789999999
Q ss_pred CeEEEEeecCCCccccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcCCCCEEEEEeCCCcEEEE
Q 047325 102 GKIRVWKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCGLLYTASWDRTFKVW 181 (368)
Q Consensus 102 g~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iw 181 (368)
++|++||+++++... .+.+|...|.+++|+|++++|++|+.|+.|++|
T Consensus 164 ~~i~~wd~~~~~~~~--------------------------------~~~~h~~~v~~~~~~~~~~~l~sg~~d~~v~~w 211 (340)
T 1got_B 164 TTCALWDIETGQQTT--------------------------------TFTGHTGDVMSLSLAPDTRLFVSGACDASAKLW 211 (340)
T ss_dssp SCEEEEETTTTEEEE--------------------------------EECCCSSCEEEEEECTTSSEEEEEETTSCEEEE
T ss_pred CcEEEEECCCCcEEE--------------------------------EEcCCCCceEEEEECCCCCEEEEEeCCCcEEEE
Confidence 999999998765322 234599999999999999999999999999999
Q ss_pred EccCCeEEEEeecCCCceEEEEeCCCC-eEEEEcCCCeEEEEEcCCCCCCcccccceee--ccccccEEEEEEcCCCCEE
Q 047325 182 RISDSKCLESVSAHDDAVNSVVSSSEG-LIFTGSADGTVKVWKREQHGKGTKHSLAQTL--LKQECAVTALVVSSSRSIV 258 (368)
Q Consensus 182 d~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~--~~~~~~i~~~~~~~~~~~l 258 (368)
|+++++++..+.+|...|.+++|+|++ .|++|+.|+.|++||++... ....+ ..+...|.+++|+|++++|
T Consensus 212 d~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~d~~v~iwd~~~~~------~~~~~~~~~~~~~v~~~~~s~~g~~l 285 (340)
T 1got_B 212 DVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQ------ELMTYSHDNIICGITSVSFSKSGRLL 285 (340)
T ss_dssp ETTTCSEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTE------EEEEECCTTCCSCEEEEEECTTSSEE
T ss_pred ECCCCeeEEEEcCCcCCEEEEEEcCCCCEEEEEcCCCcEEEEECCCCc------EEEEEccCCcccceEEEEECCCCCEE
Confidence 999999999999999999999999999 99999999999999998652 12222 2334579999999999999
Q ss_pred EEecCCCcEEEEeCCCccccceeeeccceEEEEEE--eCCCEEEEeeCCCeEEEEe
Q 047325 259 YCGSSDGLVNFWEREKQLSHGGVLKGHKLAVLCLA--AAGKLVFSGSADKTICVWR 312 (368)
Q Consensus 259 ~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~~~~~dg~i~iw~ 312 (368)
++|+.||.|++||+.+.... ..+.+|...|.++. |++.+|++|+.||.|++||
T Consensus 286 ~~g~~d~~i~vwd~~~~~~~-~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~i~iWd 340 (340)
T 1got_B 286 LAGYDDFNCNVWDALKADRA-GVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340 (340)
T ss_dssp EEEETTSEEEEEETTTCCEE-EEEECCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred EEECCCCeEEEEEcccCcEe-eEeecCCCcEEEEEEcCCCCEEEEEcCCccEEecC
Confidence 99999999999999876554 56778988886554 6899999999999999996
No 39
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.3e-39 Score=269.75 Aligned_cols=265 Identities=20% Similarity=0.331 Sum_probs=223.0
Q ss_pred CCCceeeeccCcCCcEEEEEec-CCEEEEccCCCcEEEEcCCcc--eecccCCCCCeeEEEEe--CCEEEEEeCCCeEEE
Q 047325 32 PQNGLIGSLVREEGHIYSLAAS-KDLLYTGSDSKNIRVWKNLKE--FCGFKASSGLVKAIVIS--GEKIFTGHQDGKIRV 106 (368)
Q Consensus 32 ~~~~~~~~~~~h~~~i~~~~~~-~~~l~s~~~dg~i~iw~~~~~--~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~v 106 (368)
...++...+.+|.+.|.+++|. +++|++|+.||.|++||+... ...+..|...|.+++|+ +++|++++.||.|++
T Consensus 6 ~~~~~~~~l~~h~~~v~~~~~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~ 85 (313)
T 3odt_A 6 TGYQLSATLKGHDQDVRDVVAVDDSKVASVSRDGTVRLWSKDDQWLGTVVYTGQGFLNSVCYDSEKELLLFGGKDTMING 85 (313)
T ss_dssp CCCEEEEEECCCSSCEEEEEEEETTEEEEEETTSEEEEEEESSSEEEEEEEECSSCEEEEEEETTTTEEEEEETTSCEEE
T ss_pred ccHHHHHHhhCCCCCcEEEEecCCCEEEEEEcCCcEEEEECCCCEEEEEeecCCccEEEEEECCCCCEEEEecCCCeEEE
Confidence 3457788899999999999983 459999999999999998753 55677899999999998 789999999999999
Q ss_pred EeecCCCccccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcCCCCEEEEEeCCCcEEEEEccCC
Q 047325 107 WKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCGLLYTASWDRTFKVWRISDS 186 (368)
Q Consensus 107 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~ 186 (368)
|++....... ....+.+|...|.++.| +++++++++.|+.|++|| .+
T Consensus 86 ~~~~~~~~~~-----------------------------~~~~~~~~~~~i~~~~~--~~~~l~~~~~d~~i~~~d--~~ 132 (313)
T 3odt_A 86 VPLFATSGED-----------------------------PLYTLIGHQGNVCSLSF--QDGVVISGSWDKTAKVWK--EG 132 (313)
T ss_dssp EETTCCTTSC-----------------------------C-CEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEE--TT
T ss_pred EEeeecCCCC-----------------------------cccchhhcccCEEEEEe--cCCEEEEEeCCCCEEEEc--CC
Confidence 9997654211 11223458999999999 567999999999999999 78
Q ss_pred eEEEEeecCCCceEEEEeCC-CC-eEEEEcCCCeEEEEEcCCCCCCcccccceeecc-ccccEEEEEEcCCCCEEEEecC
Q 047325 187 KCLESVSAHDDAVNSVVSSS-EG-LIFTGSADGTVKVWKREQHGKGTKHSLAQTLLK-QECAVTALVVSSSRSIVYCGSS 263 (368)
Q Consensus 187 ~~~~~~~~~~~~v~~~~~~~-~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~-~~~~i~~~~~~~~~~~l~~~~~ 263 (368)
+.+..+..|...+.++.+.| ++ .+++++.|+.|++||... ....+.. +...+.+++|+|++. +++++.
T Consensus 133 ~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~~--------~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~ 203 (313)
T 3odt_A 133 SLVYNLQAHNASVWDAKVVSFSENKFLTASADKTIKLWQNDK--------VIKTFSGIHNDVVRHLAVVDDGH-FISCSN 203 (313)
T ss_dssp EEEEEEECCSSCEEEEEEEETTTTEEEEEETTSCEEEEETTE--------EEEEECSSCSSCEEEEEEEETTE-EEEEET
T ss_pred cEEEecccCCCceeEEEEccCCCCEEEEEECCCCEEEEecCc--------eEEEEeccCcccEEEEEEcCCCe-EEEccC
Confidence 88889999999999999987 55 999999999999999542 3444454 889999999999988 999999
Q ss_pred CCcEEEEeCCCccccceeeeccceEEEEEEe--CCCEEEEeeCCCeEEEEecCCCceeeeEeeeccccCeeEEEEecCCe
Q 047325 264 DGLVNFWEREKQLSHGGVLKGHKLAVLCLAA--AGKLVFSGSADKTICVWRRDGAIHTCLSVLTGHTGPVKCLAVEEDRD 341 (368)
Q Consensus 264 dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~ 341 (368)
||.|++||+++++.. ..+..|...+.++.+ ++ .|++++.||.|++||+.+. +.+..+..|..+|++++|+|++.
T Consensus 204 dg~i~i~d~~~~~~~-~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~v~iwd~~~~--~~~~~~~~~~~~i~~~~~~~~~~ 279 (313)
T 3odt_A 204 DGLIKLVDMHTGDVL-RTYEGHESFVYCIKLLPNG-DIVSCGEDRTVRIWSKENG--SLKQVITLPAISIWSVDCMSNGD 279 (313)
T ss_dssp TSEEEEEETTTCCEE-EEEECCSSCEEEEEECTTS-CEEEEETTSEEEEECTTTC--CEEEEEECSSSCEEEEEECTTSC
T ss_pred CCeEEEEECCchhhh-hhhhcCCceEEEEEEecCC-CEEEEecCCEEEEEECCCC--ceeEEEeccCceEEEEEEccCCC
Confidence 999999999987655 566678877766654 56 6999999999999998876 67788889999999999999998
Q ss_pred e
Q 047325 342 S 342 (368)
Q Consensus 342 ~ 342 (368)
+
T Consensus 280 ~ 280 (313)
T 3odt_A 280 I 280 (313)
T ss_dssp E
T ss_pred E
Confidence 3
No 40
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=100.00 E-value=2.2e-40 Score=282.02 Aligned_cols=283 Identities=14% Similarity=0.178 Sum_probs=225.6
Q ss_pred eccCcCCcEEEEEecC-----C-EEEEccCCCcEEEEcCCcc--eeccc-----CCCCCeeEEEEeC------CEEEEEe
Q 047325 39 SLVREEGHIYSLAASK-----D-LLYTGSDSKNIRVWKNLKE--FCGFK-----ASSGLVKAIVISG------EKIFTGH 99 (368)
Q Consensus 39 ~~~~h~~~i~~~~~~~-----~-~l~s~~~dg~i~iw~~~~~--~~~~~-----~~~~~v~~~~~~~------~~l~s~~ 99 (368)
...+|.++|++++|++ + .+++++.++.|++||.... +..+. .|...|.+++|+. .+|++|+
T Consensus 13 ~~~~h~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~ 92 (366)
T 3k26_A 13 LKEDHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVAG 92 (366)
T ss_dssp EECTTCSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGCEEEEEEEECSCTTCCEEEEEEEECTTTCCEEEEEEE
T ss_pred eecCCCCceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcEEEeeeeccccCCCCcEEEEEeccCCCCCCCEEEEec
Confidence 3458999999999985 3 5667777789999998732 22332 3678899999982 3899999
Q ss_pred CCCeEEEEeecCCCccccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcC-CCCEEEEEeCCCcE
Q 047325 100 QDGKIRVWKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQ-DCGLLYTASWDRTF 178 (368)
Q Consensus 100 ~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i 178 (368)
.||.|++||+.+++... .+.+|...|.+++|+| ++++|++++.||.|
T Consensus 93 ~dg~i~v~d~~~~~~~~--------------------------------~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~i 140 (366)
T 3k26_A 93 SRGIIRIINPITMQCIK--------------------------------HYVGHGNAINELKFHPRDPNLLLSVSKDHAL 140 (366)
T ss_dssp TTCEEEEECTTTCCEEE--------------------------------EEESCCSCEEEEEECSSCTTEEEEEETTSCE
T ss_pred CCCEEEEEEchhceEee--------------------------------eecCCCCcEEEEEECCCCCCEEEEEeCCCeE
Confidence 99999999998765322 2344999999999999 89999999999999
Q ss_pred EEEEccCCeEEEEe---ecCCCceEEEEeCCCC-eEEEEcCCCeEEEEEcCCCCCCccc---------------------
Q 047325 179 KVWRISDSKCLESV---SAHDDAVNSVVSSSEG-LIFTGSADGTVKVWKREQHGKGTKH--------------------- 233 (368)
Q Consensus 179 ~iwd~~~~~~~~~~---~~~~~~v~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~--------------------- 233 (368)
++||+++++.+..+ ..|...|.+++|+|++ .|++++.||.|++||++........
T Consensus 141 ~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (366)
T 3k26_A 141 RLWNIQTDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIH 220 (366)
T ss_dssp EEEETTTTEEEEEECSTTSCSSCEEEEEECTTSSEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEEC
T ss_pred EEEEeecCeEEEEecccccccCceeEEEECCCCCEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeec
Confidence 99999999999888 6899999999999999 9999999999999999864210000
Q ss_pred -ccceeeccccccEEEEEEcCCCCEEEEecCCCcEEEEeCCCcccc-------------ceeeeccceEE--EEEEeC--
Q 047325 234 -SLAQTLLKQECAVTALVVSSSRSIVYCGSSDGLVNFWEREKQLSH-------------GGVLKGHKLAV--LCLAAA-- 295 (368)
Q Consensus 234 -~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~-------------~~~~~~~~~~~--~~~~~~-- 295 (368)
........|...|.+++|+ +++|++++.||.|++||+++.... ...+..|...+ ++++|+
T Consensus 221 ~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~ 298 (366)
T 3k26_A 221 FPDFSTRDIHRNYVDCVRWL--GDLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFSMDFW 298 (366)
T ss_dssp CCSEEECSSCSSCCCEEEEE--TTEEEEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSCCSSCCCCEECTT
T ss_pred cCccccccCCcceEEEEEEc--CCEEEEEecCCEEEEEeCCCccccccccccCCcchheeccccccCCcEEEEEEcCCCC
Confidence 0011223388899999998 779999999999999998865431 23344454444 567788
Q ss_pred CCEEEEeeCCCeEEEEecCCCce--eeeEeeecc--ccCeeEEEEecCCeeeecCCcceEEEEEeeCCcccccccC
Q 047325 296 GKLVFSGSADKTICVWRRDGAIH--TCLSVLTGH--TGPVKCLAVEEDRDSSSSTSSCAQRWIVYSGSLDKSDDDV 367 (368)
Q Consensus 296 ~~~l~~~~~dg~i~iw~~~~~~~--~~~~~~~~h--~~~v~~l~~~~~~~~~~~~~~~~~~w~l~sg~~D~~v~i~ 367 (368)
+++|++|+.||.|++||+..... .....+.+| ..+|++++|+|+++ .|++|+.||.|++|
T Consensus 299 ~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~------------~l~s~~~dg~i~iw 362 (366)
T 3k26_A 299 QKMLALGNQVGKLYVWDLEVEDPHKAKCTTLTHHKCGAAIRQTSFSRDSS------------ILIAVCDDASIWRW 362 (366)
T ss_dssp SSEEEEECTTSCEEEEECCSSSGGGCEEEEECCTTCCSCEEEEEECTTSS------------EEEEEETTSEEEEE
T ss_pred CcEEEEEecCCcEEEEECCCCCCccccceEEcccccCCceEEEEeCCCCC------------eEEEEeCCCEEEEE
Confidence 99999999999999999987532 244567777 78999999999999 78888899999888
No 41
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=100.00 E-value=9.2e-40 Score=277.25 Aligned_cols=281 Identities=12% Similarity=0.108 Sum_probs=212.6
Q ss_pred CCcEEEEEecCC--EEEEccCCC-------cEEEEcCCcc------------eecccCCCCCeeEEEEeCCEEEEEe---
Q 047325 44 EGHIYSLAASKD--LLYTGSDSK-------NIRVWKNLKE------------FCGFKASSGLVKAIVISGEKIFTGH--- 99 (368)
Q Consensus 44 ~~~i~~~~~~~~--~l~s~~~dg-------~i~iw~~~~~------------~~~~~~~~~~v~~~~~~~~~l~s~~--- 99 (368)
.-+|++++|+++ +|++|+.|. .|++|++... ...+..|...|.+++++++.+++|.
T Consensus 14 g~PV~sv~fs~dg~~l~sGGg~~~~sGi~N~i~~w~~~~~~~~~~~~~~~~~~~~l~~~~~~v~s~~~~~~~~~~g~~~~ 93 (365)
T 4h5i_A 14 GYPAYGAKFLNNDTLLVAGGGGEGNNGIPNKLTVLRVDPTKDTEKEQFHILSEFALEDNDDSPTAIDASKGIILVGCNEN 93 (365)
T ss_dssp SSCEEEEEEEETTEEEEEEECCSSSSSCCEEEEEEEECTTSSSHHHHEEEEEEEECCTTSCCCCEEEEETTEEEEECCCC
T ss_pred CCCEEEEEEeCCCcEEEEECCCccccCCCCEEEEEEEcCCCcceeeeeeeeeEEEccCCCCceEEEEeCCCEEEEEECCC
Confidence 347999999866 888886543 5999986522 1246688899999999999888775
Q ss_pred --------CCCeEEEEeecCCCccccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcCCCCEEEE
Q 047325 100 --------QDGKIRVWKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCGLLYT 171 (368)
Q Consensus 100 --------~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~ 171 (368)
.|+.+++|++............ ........+...+.+++|+|||+++++
T Consensus 94 ~~~l~s~~~d~~~r~~~~~~~~~~~~~~~~-----------------------~~~~~~~~~~~~~~~v~fSpDg~~la~ 150 (365)
T 4h5i_A 94 STKITQGKGNKHLRKFKYDKVNDQLEFLTS-----------------------VDFDASTNADDYTKLVYISREGTVAAI 150 (365)
T ss_dssp HHHHHHTSCCCCEEEEEEETTTTEEEEEEE-----------------------ECSSCCCCTTCCEEEEEECTTSSCEEE
T ss_pred ccEEEEecCCCcEEEEEecCCCceEEEeee-----------------------eceeecCCcccCEEEEEEcCCCCEEEE
Confidence 4677999988765432111000 000011125567899999999999876
Q ss_pred Ee--CCCcEEEEEccCCeEEEEeecCCCceEEEEeCCCC-eEEEEcCCCeEEEEEcCCCCCCcccccceeeccccccEEE
Q 047325 172 AS--WDRTFKVWRISDSKCLESVSAHDDAVNSVVSSSEG-LIFTGSADGTVKVWKREQHGKGTKHSLAQTLLKQECAVTA 248 (368)
Q Consensus 172 ~~--~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~i~~ 248 (368)
++ .|++|++||+.+++++..+. |...|.+++|+|++ ++++++ ++.+.+|+...+.. ........|...+.+
T Consensus 151 as~~~d~~i~iwd~~~~~~~~~~~-~~~~V~~v~fspdg~~l~s~s-~~~~~~~~~~~~~~----~~~~~~~~~~~~v~~ 224 (365)
T 4h5i_A 151 ASSKVPAIMRIIDPSDLTEKFEIE-TRGEVKDLHFSTDGKVVAYIT-GSSLEVISTVTGSC----IARKTDFDKNWSLSK 224 (365)
T ss_dssp EESCSSCEEEEEETTTTEEEEEEE-CSSCCCEEEECTTSSEEEEEC-SSCEEEEETTTCCE----EEEECCCCTTEEEEE
T ss_pred EECCCCCEEEEeECCCCcEEEEeC-CCCceEEEEEccCCceEEecc-ceeEEEEEeccCcc----eeeeecCCCCCCEEE
Confidence 54 68999999999999998886 77889999999999 777776 45566776655422 122344568889999
Q ss_pred EEEcCCCCEEEEecCCC----cEEEEeCCCcccc---ceeeeccceEE--EEEEeCCCEEEEeeCCCeEEEEecCCCcee
Q 047325 249 LVVSSSRSIVYCGSSDG----LVNFWEREKQLSH---GGVLKGHKLAV--LCLAAAGKLVFSGSADKTICVWRRDGAIHT 319 (368)
Q Consensus 249 ~~~~~~~~~l~~~~~dg----~i~i~d~~~~~~~---~~~~~~~~~~~--~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~ 319 (368)
++|+|+++++++++.|+ .+++|++...... ...+.+|...| ++++|++++|++|+.|++|+|||+.+. +
T Consensus 225 v~fspdg~~l~~~s~d~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~Spdg~~lasgs~D~~V~iwd~~~~--~ 302 (365)
T 4h5i_A 225 INFIADDTVLIAASLKKGKGIVLTKISIKSGNTSVLRSKQVTNRFKGITSMDVDMKGELAVLASNDNSIALVKLKDL--S 302 (365)
T ss_dssp EEEEETTEEEEEEEESSSCCEEEEEEEEETTEEEEEEEEEEESSCSCEEEEEECTTSCEEEEEETTSCEEEEETTTT--E
T ss_pred EEEcCCCCEEEEEecCCcceeEEeecccccceecceeeeeecCCCCCeEeEEECCCCCceEEEcCCCEEEEEECCCC--c
Confidence 99999999999999887 6888887754322 23455676666 456679999999999999999999876 6
Q ss_pred eeEee-eccccCeeEEEEecCCeeeecCCcceEEEEEeeCCcccccccC
Q 047325 320 CLSVL-TGHTGPVKCLAVEEDRDSSSSTSSCAQRWIVYSGSLDKSDDDV 367 (368)
Q Consensus 320 ~~~~~-~~h~~~v~~l~~~~~~~~~~~~~~~~~~w~l~sg~~D~~v~i~ 367 (368)
++..+ .+|..+|++|+|+|||+ +|+|||.|++||||
T Consensus 303 ~~~~~~~gH~~~V~~v~fSpdg~------------~laS~S~D~tvrvw 339 (365)
T 4h5i_A 303 MSKIFKQAHSFAITEVTISPDST------------YVASVSAANTIHII 339 (365)
T ss_dssp EEEEETTSSSSCEEEEEECTTSC------------EEEEEETTSEEEEE
T ss_pred EEEEecCcccCCEEEEEECCCCC------------EEEEEeCCCeEEEE
Confidence 66664 78999999999999999 78888888888888
No 42
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=100.00 E-value=2.3e-41 Score=289.45 Aligned_cols=290 Identities=15% Similarity=0.083 Sum_probs=216.4
Q ss_pred ccCcCCcEEEEEecCC--EEEEccCCCcEEEEcCCc----ceecccCCCCCeeEEEEe--CCEEEEEeCCCeEEEEeecC
Q 047325 40 LVREEGHIYSLAASKD--LLYTGSDSKNIRVWKNLK----EFCGFKASSGLVKAIVIS--GEKIFTGHQDGKIRVWKISP 111 (368)
Q Consensus 40 ~~~h~~~i~~~~~~~~--~l~s~~~dg~i~iw~~~~----~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~vw~~~~ 111 (368)
+..|.++|++++|+++ +|++|+.||.|++||+.. ....+.+|...|.+++|+ +++|++++.||.|++||+.+
T Consensus 7 ~~~~~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~v~vwd~~~ 86 (377)
T 3dwl_C 7 LHILPKPSYEHAFNSQRTEFVTTTATNQVELYEQDGNGWKHARTFSDHDKIVTCVDWAPKSNRIVTCSQDRNAYVYEKRP 86 (377)
T ss_dssp EEECSSCCSCCEECSSSSEEECCCSSSCBCEEEEETTEEEECCCBCCCSSCEEEEEECTTTCCEEEEETTSSEEEC----
T ss_pred EecCCCcEEEEEECCCCCEEEEecCCCEEEEEEccCCceEEEEEEecCCceEEEEEEeCCCCEEEEEeCCCeEEEEEcCC
Confidence 3446789999999855 999999999999999874 355788999999999998 78999999999999999987
Q ss_pred CCccccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcCCCCEEEEEeCCCcEEEEEccCCe---E
Q 047325 112 KNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCGLLYTASWDRTFKVWRISDSK---C 188 (368)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~---~ 188 (368)
++... ....+.+|...|.+++|+|++++|++++.|+.|++||+++++ .
T Consensus 87 ~~~~~-----------------------------~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~ 137 (377)
T 3dwl_C 87 DGTWK-----------------------------QTLVLLRLNRAATFVRWSPNEDKFAVGSGARVISVCYFEQENDWWV 137 (377)
T ss_dssp --CCC-----------------------------CEEECCCCSSCEEEEECCTTSSCCEEEESSSCEEECCC-----CCC
T ss_pred CCcee-----------------------------eeeEecccCCceEEEEECCCCCEEEEEecCCeEEEEEECCccccee
Confidence 65100 011223489999999999999999999999999999999887 3
Q ss_pred EEEeec-CCCceEEEEeCCCC-eEEEEcCCCeEEEEEcCCCCCCc------------ccccceeeccccccEEEEEEcCC
Q 047325 189 LESVSA-HDDAVNSVVSSSEG-LIFTGSADGTVKVWKREQHGKGT------------KHSLAQTLLKQECAVTALVVSSS 254 (368)
Q Consensus 189 ~~~~~~-~~~~v~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~------------~~~~~~~~~~~~~~i~~~~~~~~ 254 (368)
...+.. |...|.+++|+|++ +|++++.|+.|++||++...... ...+...+ .|...|.+++|+|+
T Consensus 138 ~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~sp~ 216 (377)
T 3dwl_C 138 SKHLKRPLRSTILSLDWHPNNVLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSGGWVHAVGFSPS 216 (377)
T ss_dssp CEEECSSCCSCEEEEEECTTSSEEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCSSSEEEEEECTT
T ss_pred eeEeecccCCCeEEEEEcCCCCEEEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcc-cCCceEEEEEECCC
Confidence 677777 99999999999999 99999999999999986432100 12233444 88899999999999
Q ss_pred CCEEEEecCCCcEEEEeCCCcccc---ceeeeccceEE--EEEEeCCCEEEEeeCCCeEEEEecCCCceeee--------
Q 047325 255 RSIVYCGSSDGLVNFWEREKQLSH---GGVLKGHKLAV--LCLAAAGKLVFSGSADKTICVWRRDGAIHTCL-------- 321 (368)
Q Consensus 255 ~~~l~~~~~dg~i~i~d~~~~~~~---~~~~~~~~~~~--~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~-------- 321 (368)
+++|++++.||.|++||++++... ...+.+|...+ ++++|++++|++|+.|+.+ +|+.........
T Consensus 217 ~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 295 (377)
T 3dwl_C 217 GNALAYAGHDSSVTIAYPSAPEQPPRALITVKLSQLPLRSLLWANESAIVAAGYNYSPI-LLQGNESGWAHTRDLDAGTS 295 (377)
T ss_dssp SSCEEEEETTTEEC-CEECSTTSCEEECCCEECSSSCEEEEEEEETTEEEEEESSSSEE-EECCCC---CCSBCCCSCCC
T ss_pred CCEEEEEeCCCcEEEEECCCCCCcceeeEeecCCCCceEEEEEcCCCCEEEEEcCCcEE-EEEeCCCceEEEeeeccccc
Confidence 999999999999999999987652 35666777666 5567799999999877666 666542110000
Q ss_pred --------------------------Ee----------------eeccccCeeEEEEecCCeeeecCCcceEEEEEeeCC
Q 047325 322 --------------------------SV----------------LTGHTGPVKCLAVEEDRDSSSSTSSCAQRWIVYSGS 359 (368)
Q Consensus 322 --------------------------~~----------------~~~h~~~v~~l~~~~~~~~~~~~~~~~~~w~l~sg~ 359 (368)
.. ...|.+.|+++++.+... .....++|||
T Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~H~~~i~~~~~~~~~~--------~~~~~~~s~g 367 (377)
T 3dwl_C 296 KTSFTHTGNTGEGREEEGPVSFTALRSTFRNMDLKGSSQSISSLPTVHQNMIATLRPYAGTP--------GNITAFTSSG 367 (377)
T ss_dssp CCCBSSSSSBCCCCCC-------------------------CCCSSSCSSCEEEEEEEEEET--------TEEEEEEEEE
T ss_pred ccccccccccccccccccccccccccccccchhhccccccccccCccccceeEEEeccCCCC--------CceEEEEeec
Confidence 00 113888999998765432 0122589999
Q ss_pred cccccccCC
Q 047325 360 LDKSDDDVH 368 (368)
Q Consensus 360 ~D~~v~i~h 368 (368)
.||.|++|.
T Consensus 368 ~Dg~i~iWd 376 (377)
T 3dwl_C 368 TDGRVVLWT 376 (377)
T ss_dssp TTSEEEEEC
T ss_pred CCCcEEEec
Confidence 999999994
No 43
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=100.00 E-value=1.3e-39 Score=268.86 Aligned_cols=247 Identities=20% Similarity=0.232 Sum_probs=200.5
Q ss_pred eeeccCcCCcEEEEEecCC--EEEEccCCCcEEEEcCCc----ceecccCCCCCeeEEEEe----CCEEEEEeCCCeEEE
Q 047325 37 IGSLVREEGHIYSLAASKD--LLYTGSDSKNIRVWKNLK----EFCGFKASSGLVKAIVIS----GEKIFTGHQDGKIRV 106 (368)
Q Consensus 37 ~~~~~~h~~~i~~~~~~~~--~l~s~~~dg~i~iw~~~~----~~~~~~~~~~~v~~~~~~----~~~l~s~~~dg~i~v 106 (368)
+..+.+|.+.|++++|+++ +||+|+.|++|+|||+.. .+..+.+|.++|.+++|+ +++|++|+.||+|++
T Consensus 2 ~~~~~~h~~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~i 81 (297)
T 2pm7_B 2 VVIANAHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVMI 81 (297)
T ss_dssp CEECCSCSSCEEEEEECTTSSEEEEEETTSCEEEEEBCSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTTEEEE
T ss_pred ceeccCCcCceEEEEECCCCCEEEEEeCCCEEEEEecCCCCcEEEEEEccccCCeEEEEecCCCcCCEEEEEcCCCEEEE
Confidence 3457899999999999854 999999999999999853 356788999999999995 679999999999999
Q ss_pred EeecCCCccccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcCC--CCEEEEEeCCCcEEEEEcc
Q 047325 107 WKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQD--CGLLYTASWDRTFKVWRIS 184 (368)
Q Consensus 107 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~d~~i~iwd~~ 184 (368)
||+++++... ...+.+|...|.+++|+|+ +.+|++++.|+.|++||++
T Consensus 82 Wd~~~~~~~~------------------------------~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~ 131 (297)
T 2pm7_B 82 WKEENGRWSQ------------------------------IAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFK 131 (297)
T ss_dssp EEBSSSCBCC------------------------------CEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBC
T ss_pred EEcCCCceEE------------------------------EEEeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEec
Confidence 9998653211 1122348899999999997 8899999999999999998
Q ss_pred CCe--EEEEeecCCCceEEEEeCCC-------------C-eEEEEcCCCeEEEEEcCCCCCCcccccceeeccccccEEE
Q 047325 185 DSK--CLESVSAHDDAVNSVVSSSE-------------G-LIFTGSADGTVKVWKREQHGKGTKHSLAQTLLKQECAVTA 248 (368)
Q Consensus 185 ~~~--~~~~~~~~~~~v~~~~~~~~-------------~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~i~~ 248 (368)
++. ....+.+|...|.+++|+|+ + +|++|+.|+.|++||++.... .......+.+|...|.+
T Consensus 132 ~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~--~~~~~~~l~~H~~~V~~ 209 (297)
T 2pm7_B 132 ENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQ--TYVLESTLEGHSDWVRD 209 (297)
T ss_dssp SSSCBCCEEEECCSSCEEEEEECCCC------------CCEEEEEETTSCEEEEEEETTTT--EEEEEEEECCCSSCEEE
T ss_pred CCCceeeeeeecccCccceEeecCCcccccccCCCCCCcceEEEEcCCCcEEEEEEcCCCc--eEEEEEEecCCCCceEE
Confidence 763 24567789999999999996 3 899999999999999976431 11234567789999999
Q ss_pred EEEcCCC---CEEEEecCCCcEEEEeCCCcccc--ceee--eccceEE--EEEEeCCCEEEEeeCCCeEEEEecCC
Q 047325 249 LVVSSSR---SIVYCGSSDGLVNFWEREKQLSH--GGVL--KGHKLAV--LCLAAAGKLVFSGSADKTICVWRRDG 315 (368)
Q Consensus 249 ~~~~~~~---~~l~~~~~dg~i~i~d~~~~~~~--~~~~--~~~~~~~--~~~~~~~~~l~~~~~dg~i~iw~~~~ 315 (368)
++|+|++ ++|++++.|+.|++||++..... .... ..|...+ ++++|++++|++++.||.|++|+...
T Consensus 210 v~~sp~~~~~~~las~s~D~~v~iWd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~las~~~D~~v~lw~~~~ 285 (297)
T 2pm7_B 210 VAWSPTVLLRSYMASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENL 285 (297)
T ss_dssp EEECCCCSSSEEEEEEETTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEETTSCEEEEEECT
T ss_pred EEECCCCCCceEEEEEECCCcEEEEEeCCCCCccceeeeecccCCCcEEEEEECCCCCEEEEEcCCCcEEEEEECC
Confidence 9999984 89999999999999998764311 1122 3455555 56677899999999999999998763
No 44
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=100.00 E-value=2.1e-39 Score=279.33 Aligned_cols=279 Identities=17% Similarity=0.234 Sum_probs=224.8
Q ss_pred eeeccCcCCc--EEEEEecCCEEEEccCCCcEEEEcCCcc--eeccc-CCCCCeeEEEEe--CCEEEEEeCCCeEEEEee
Q 047325 37 IGSLVREEGH--IYSLAASKDLLYTGSDSKNIRVWKNLKE--FCGFK-ASSGLVKAIVIS--GEKIFTGHQDGKIRVWKI 109 (368)
Q Consensus 37 ~~~~~~h~~~--i~~~~~~~~~l~s~~~dg~i~iw~~~~~--~~~~~-~~~~~v~~~~~~--~~~l~s~~~dg~i~vw~~ 109 (368)
+....+|.+. +.+++++++.+++++.||.|++||.... ...+. .|...|.+++|+ +++|++|+.||.|++||+
T Consensus 84 ~~~~~~~~~~~~~~~~~~s~~~l~~~~~d~~v~lw~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~ 163 (401)
T 4aez_A 84 VLDAPGIIDDYYLNLLDWSNLNVVAVALERNVYVWNADSGSVSALAETDESTYVASVKWSHDGSFLSVGLGNGLVDIYDV 163 (401)
T ss_dssp EEECTTCCCCTTCBCEEECTTSEEEEEETTEEEEEETTTCCEEEEEECCTTCCEEEEEECTTSSEEEEEETTSCEEEEET
T ss_pred eeeCCCCcCCceEEEEeecCCCEEEEECCCeEEEeeCCCCcEeEeeecCCCCCEEEEEECCCCCEEEEECCCCeEEEEEC
Confidence 3344566655 5668888888889999999999998754 22333 388999999998 789999999999999999
Q ss_pred cCCCccccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcCCCCEEEEEeCCCcEEEEEcc-CCeE
Q 047325 110 SPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCGLLYTASWDRTFKVWRIS-DSKC 188 (368)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~-~~~~ 188 (368)
.+++... .+.+|...|.+++|+ +++|++++.||.|++||++ ....
T Consensus 164 ~~~~~~~--------------------------------~~~~~~~~v~~~~~~--~~~l~~~~~dg~i~i~d~~~~~~~ 209 (401)
T 4aez_A 164 ESQTKLR--------------------------------TMAGHQARVGCLSWN--RHVLSSGSRSGAIHHHDVRIANHQ 209 (401)
T ss_dssp TTCCEEE--------------------------------EECCCSSCEEEEEEE--TTEEEEEETTSEEEEEETTSSSCE
T ss_pred cCCeEEE--------------------------------EecCCCCceEEEEEC--CCEEEEEcCCCCEEEEecccCcce
Confidence 8765332 223499999999994 5699999999999999998 5677
Q ss_pred EEEeecCCCceEEEEeCCCC-eEEEEcCCCeEEEEEcCCCCCCcccccceeeccccccEEEEEEcCCCC-EEEEec--CC
Q 047325 189 LESVSAHDDAVNSVVSSSEG-LIFTGSADGTVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSSSRS-IVYCGS--SD 264 (368)
Q Consensus 189 ~~~~~~~~~~v~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~--~d 264 (368)
+..+.+|...|.+++|+|++ .|++++.|+.|++||++.. .....+..|...|.+++|+|++. ++++++ .|
T Consensus 210 ~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~------~~~~~~~~~~~~v~~~~~~p~~~~ll~~~~gs~d 283 (401)
T 4aez_A 210 IGTLQGHSSEVCGLAWRSDGLQLASGGNDNVVQIWDARSS------IPKFTKTNHNAAVKAVAWCPWQSNLLATGGGTMD 283 (401)
T ss_dssp EEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCS------SEEEEECCCSSCCCEEEECTTSTTEEEEECCTTT
T ss_pred eeEEcCCCCCeeEEEEcCCCCEEEEEeCCCeEEEccCCCC------CccEEecCCcceEEEEEECCCCCCEEEEecCCCC
Confidence 88899999999999999998 9999999999999999865 34556778899999999999764 566654 79
Q ss_pred CcEEEEeCCCccccceeeeccceEEEEEEeCCCEEEE--eeCCCeEEEEecCCCceeeeEeeeccccCeeEEEEecCCee
Q 047325 265 GLVNFWEREKQLSHGGVLKGHKLAVLCLAAAGKLVFS--GSADKTICVWRRDGAIHTCLSVLTGHTGPVKCLAVEEDRDS 342 (368)
Q Consensus 265 g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~--~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~ 342 (368)
+.|++||++++..............++++++++++++ |+.||.|++|++..........+.+|...|++++|+|++.+
T Consensus 284 ~~i~i~d~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~g~~dg~i~v~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~ 363 (401)
T 4aez_A 284 KQIHFWNAATGARVNTVDAGSQVTSLIWSPHSKEIMSTHGFPDNNLSIWSYSSSGLTKQVDIPAHDTRVLYSALSPDGRI 363 (401)
T ss_dssp CEEEEEETTTCCEEEEEECSSCEEEEEECSSSSEEEEEECTTTCEEEEEEEETTEEEEEEEEECCSSCCCEEEECTTSSE
T ss_pred CEEEEEECCCCCEEEEEeCCCcEEEEEECCCCCeEEEEeecCCCcEEEEecCCccceeEEEecCCCCCEEEEEECCCCCE
Confidence 9999999998766644433334444666778999998 55899999999988766667778899999999999999994
Q ss_pred eecCCcceEEEEEeeCCcccccccC
Q 047325 343 SSSTSSCAQRWIVYSGSLDKSDDDV 367 (368)
Q Consensus 343 ~~~~~~~~~~w~l~sg~~D~~v~i~ 367 (368)
|++++.||.|++|
T Consensus 364 ------------l~s~~~dg~i~iw 376 (401)
T 4aez_A 364 ------------LSTAASDENLKFW 376 (401)
T ss_dssp ------------EEEECTTSEEEEE
T ss_pred ------------EEEEeCCCcEEEE
Confidence 5555555555555
No 45
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=100.00 E-value=2.9e-39 Score=279.16 Aligned_cols=280 Identities=14% Similarity=0.157 Sum_probs=220.7
Q ss_pred cCCCceeeeccCcCCcEEEEEecC---CEEEEccCCCcEEEEcCCccee--cc-------------cCCCCCeeEEEEe-
Q 047325 31 LPQNGLIGSLVREEGHIYSLAASK---DLLYTGSDSKNIRVWKNLKEFC--GF-------------KASSGLVKAIVIS- 91 (368)
Q Consensus 31 ~~~~~~~~~~~~h~~~i~~~~~~~---~~l~s~~~dg~i~iw~~~~~~~--~~-------------~~~~~~v~~~~~~- 91 (368)
+...+....+.+|.+.|++++|++ ++|++|+.||.|++||+..... .+ .+|...|.+++|+
T Consensus 30 ~~~~~~~~~~~~h~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 109 (408)
T 4a11_B 30 LELNKDRDVERIHGGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYP 109 (408)
T ss_dssp EEECTTEEECCCCSSCEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSCEEEEEECT
T ss_pred cccCcceeeeeccCCcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceEeccccccccccccccCCCcEEEEEEcc
Confidence 344556677889999999999976 4999999999999999874321 11 3599999999997
Q ss_pred --CCEEEEEeCCCeEEEEeecCCCccccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcCC---C
Q 047325 92 --GEKIFTGHQDGKIRVWKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQD---C 166 (368)
Q Consensus 92 --~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~---~ 166 (368)
+.+|++++.||.|++||+.+++..... .+...+.++.+.+. +
T Consensus 110 ~~~~~l~s~~~d~~i~iwd~~~~~~~~~~---------------------------------~~~~~~~~~~~~~~~~~~ 156 (408)
T 4a11_B 110 HDTGMFTSSSFDKTLKVWDTNTLQTADVF---------------------------------NFEETVYSHHMSPVSTKH 156 (408)
T ss_dssp TCTTCEEEEETTSEEEEEETTTTEEEEEE---------------------------------ECSSCEEEEEECSSCSSC
T ss_pred CCCcEEEEEeCCCeEEEeeCCCCccceec---------------------------------cCCCceeeeEeecCCCCC
Confidence 468999999999999999876532221 26778899999884 4
Q ss_pred CEEEEEeCCCcEEEEEccCCeEEEEeecCCCceEEEEeCCCC--eEEEEcCCCeEEEEEcCCCCCCc----------ccc
Q 047325 167 GLLYTASWDRTFKVWRISDSKCLESVSAHDDAVNSVVSSSEG--LIFTGSADGTVKVWKREQHGKGT----------KHS 234 (368)
Q Consensus 167 ~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~--~l~~~~~dg~i~i~d~~~~~~~~----------~~~ 234 (368)
.++++++.|+.|++||+++++.+..+..|...|.+++|+|++ .+++++.||.|++||++...... ...
T Consensus 157 ~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~ 236 (408)
T 4a11_B 157 CLVAVGTRGPKVQLCDLKSGSCSHILQGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQA 236 (408)
T ss_dssp CEEEEEESSSSEEEEESSSSCCCEEECCCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCC
T ss_pred cEEEEEcCCCeEEEEeCCCcceeeeecCCCCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCccccccccccccccee
Confidence 599999999999999999999999999999999999999998 58899999999999998654210 011
Q ss_pred cceeeccccccEEEEEEcCCCCEEEEecCCCcEEEEeCCCccccceeeec-----cceEEEEEE-eCCCEEEEeeCCCeE
Q 047325 235 LAQTLLKQECAVTALVVSSSRSIVYCGSSDGLVNFWEREKQLSHGGVLKG-----HKLAVLCLA-AAGKLVFSGSADKTI 308 (368)
Q Consensus 235 ~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~-----~~~~~~~~~-~~~~~l~~~~~dg~i 308 (368)
.......|...|.+++|+|++++|++++.||.|++||++++......... .......+. ..+..+++++.|+.|
T Consensus 237 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 316 (408)
T 4a11_B 237 VESANTAHNGKVNGLCFTSDGLHLLTVGTDNRMRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGSTI 316 (408)
T ss_dssp TTTSSCSCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCBCCCCCCCCCCCCSSCCCCEECCSSSSCEEEEEETTEE
T ss_pred eccccccccCceeEEEEcCCCCEEEEecCCCeEEEEECCCCccceeccccccccccccceeEEecCCCceEEEEecCCEE
Confidence 12223568889999999999999999999999999999976554222111 011112222 245667777889999
Q ss_pred EEEecCCCceeeeEeeeccccCeeEEEEecCCeeeec
Q 047325 309 CVWRRDGAIHTCLSVLTGHTGPVKCLAVEEDRDSSSS 345 (368)
Q Consensus 309 ~iw~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~ 345 (368)
++||+.+. ..+..+.+|..+|++++|+|++.++++
T Consensus 317 ~v~d~~~~--~~~~~~~~~~~~v~~~~~s~~~~~l~s 351 (408)
T 4a11_B 317 AVYTVYSG--EQITMLKGHYKTVDCCVFQSNFQELYS 351 (408)
T ss_dssp EEEETTTC--CEEEEECCCSSCEEEEEEETTTTEEEE
T ss_pred EEEECcCC--cceeeeccCCCeEEEEEEcCCCCEEEE
Confidence 99999876 778889999999999999999994443
No 46
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.8e-39 Score=280.70 Aligned_cols=273 Identities=14% Similarity=0.241 Sum_probs=223.6
Q ss_pred ccCcCCcEEEEEecCC---EEEEccCCCcEEEEcC----Ccce--------ecccC----------CCCCeeEEEEe--C
Q 047325 40 LVREEGHIYSLAASKD---LLYTGSDSKNIRVWKN----LKEF--------CGFKA----------SSGLVKAIVIS--G 92 (368)
Q Consensus 40 ~~~h~~~i~~~~~~~~---~l~s~~~dg~i~iw~~----~~~~--------~~~~~----------~~~~v~~~~~~--~ 92 (368)
...|.+.|.+++|+++ +|++|+.||.|++||+ .... ..+.. |...|.+++|+ +
T Consensus 41 ~~~~~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~ 120 (425)
T 1r5m_A 41 EIVKLDNIVSSTWNPLDESILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRHPFALSASSGKTTNQVTCLAWSHDG 120 (425)
T ss_dssp EEEECSCCSEEEECSSCTTEEEEEETBTEEEEEEEEEC------CEEEEEEEEEECCCCCC------CBCEEEEEECTTS
T ss_pred eeeccCceEEEEECCCCCcEEEEecCCceEEEEEEecccCCccccccccccccccccccccccccCCCCceEEEEEcCCC
Confidence 3456699999999854 9999999999999999 5332 22222 67799999998 7
Q ss_pred CEEEEEeCCCeEEEEeecCCCccccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcCCCCEEEEE
Q 047325 93 EKIFTGHQDGKIRVWKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCGLLYTA 172 (368)
Q Consensus 93 ~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~ 172 (368)
++|++++.||.|++||. +++. ...+.+|...|.+++|+|++++|+++
T Consensus 121 ~~l~~~~~dg~i~i~~~-~~~~--------------------------------~~~~~~~~~~v~~~~~~~~~~~l~~~ 167 (425)
T 1r5m_A 121 NSIVTGVENGELRLWNK-TGAL--------------------------------LNVLNFHRAPIVSVKWNKDGTHIISM 167 (425)
T ss_dssp SEEEEEETTSCEEEEET-TSCE--------------------------------EEEECCCCSCEEEEEECTTSSEEEEE
T ss_pred CEEEEEeCCCeEEEEeC-CCCe--------------------------------eeeccCCCccEEEEEECCCCCEEEEE
Confidence 89999999999999993 3321 11233489999999999999999999
Q ss_pred eCCCcEEEEEccCCeEEEEeecCCCc---------------eEEEEeCCCCeEEEEcCCCeEEEEEcCCCCCCcccccce
Q 047325 173 SWDRTFKVWRISDSKCLESVSAHDDA---------------VNSVVSSSEGLIFTGSADGTVKVWKREQHGKGTKHSLAQ 237 (368)
Q Consensus 173 ~~d~~i~iwd~~~~~~~~~~~~~~~~---------------v~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~ 237 (368)
+.|+.|++||+.+++.+..+..+... +.++.|++++.+++++.|+.|++||++.. ....
T Consensus 168 ~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~------~~~~ 241 (425)
T 1r5m_A 168 DVENVTILWNVISGTVMQHFELKETGGSSINAENHSGDGSLGVDVEWVDDDKFVIPGPKGAIFVYQITEK------TPTG 241 (425)
T ss_dssp ETTCCEEEEETTTTEEEEEECCC---------------CCCBSCCEEEETTEEEEECGGGCEEEEETTCS------SCSE
T ss_pred ecCCeEEEEECCCCcEEEEeeccccCccceeeccccCCcceeeEEEEcCCCEEEEEcCCCeEEEEEcCCC------ceee
Confidence 99999999999999999998887776 89999999999999999999999999865 2455
Q ss_pred eeccccccEEEEEEcCCCCEEEEecCCCcEEEEeCCCccccceeeeccceEEEE--EEeCCCEEEEeeCCCeEEEEecCC
Q 047325 238 TLLKQECAVTALVVSSSRSIVYCGSSDGLVNFWEREKQLSHGGVLKGHKLAVLC--LAAAGKLVFSGSADKTICVWRRDG 315 (368)
Q Consensus 238 ~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~~~~~dg~i~iw~~~~ 315 (368)
.+..|...|.+++|+|++++|++++.||.|++||+++.... ..+..|...+.+ +++++ ++++++.||.|++||+.+
T Consensus 242 ~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~-~~~~~~~~~i~~~~~~~~~-~l~~~~~d~~i~i~d~~~ 319 (425)
T 1r5m_A 242 KLIGHHGPISVLEFNDTNKLLLSASDDGTLRIWHGGNGNSQ-NCFYGHSQSIVSASWVGDD-KVISCSMDGSVRLWSLKQ 319 (425)
T ss_dssp EECCCSSCEEEEEEETTTTEEEEEETTSCEEEECSSSBSCS-EEECCCSSCEEEEEEETTT-EEEEEETTSEEEEEETTT
T ss_pred eeccCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCccc-eEecCCCccEEEEEECCCC-EEEEEeCCCcEEEEECCC
Confidence 66788999999999999999999999999999999986554 455667766654 45567 999999999999999987
Q ss_pred CceeeeEeeeccccCeeEEEEecCCeeeecCCcceEEEEEeeCCcccccccC
Q 047325 316 AIHTCLSVLTGHTGPVKCLAVEEDRDSSSSTSSCAQRWIVYSGSLDKSDDDV 367 (368)
Q Consensus 316 ~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~w~l~sg~~D~~v~i~ 367 (368)
. ..+..+..|..+|++++|+|++. .|++++.||.|++|
T Consensus 320 ~--~~~~~~~~~~~~i~~~~~s~~~~------------~l~~~~~dg~i~i~ 357 (425)
T 1r5m_A 320 N--TLLALSIVDGVPIFAGRISQDGQ------------KYAVAFMDGQVNVY 357 (425)
T ss_dssp T--EEEEEEECTTCCEEEEEECTTSS------------EEEEEETTSCEEEE
T ss_pred C--cEeEecccCCccEEEEEEcCCCC------------EEEEEECCCeEEEE
Confidence 6 67788889999999999999999 56666666666665
No 47
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=100.00 E-value=3.2e-40 Score=274.93 Aligned_cols=243 Identities=17% Similarity=0.234 Sum_probs=193.5
Q ss_pred eccCcCCcEEEEEecC--CEEEEccCCCcEEEEcCCcc----eecccCCCCCeeEEEEe----CCEEEEEeCCCeEEEEe
Q 047325 39 SLVREEGHIYSLAASK--DLLYTGSDSKNIRVWKNLKE----FCGFKASSGLVKAIVIS----GEKIFTGHQDGKIRVWK 108 (368)
Q Consensus 39 ~~~~h~~~i~~~~~~~--~~l~s~~~dg~i~iw~~~~~----~~~~~~~~~~v~~~~~~----~~~l~s~~~dg~i~vw~ 108 (368)
.+.+|.+.|++++|++ ++||+|+.|++|++||+... +..+.+|.+.|.+++|+ +++|++|+.|++|++||
T Consensus 8 ~~~~H~~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~~~~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~iWd 87 (316)
T 3bg1_A 8 VDTSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWR 87 (316)
T ss_dssp ------CCEEEEEECGGGCEEEEEETTTEEEEEEEETTEEEEEEEEECCSSCEEEEEECCGGGSSCEEEEETTSCEEEEC
T ss_pred ecccccCeEEEeeEcCCCCEEEEEeCCCeEEEEEecCCCcEEEEEEcCCCccEEEEEeCCCCCCCEEEEEECCCEEEEEE
Confidence 4679999999999974 59999999999999998643 45688999999999995 68999999999999999
Q ss_pred ecCCCccccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcCC--CCEEEEEeCCCcEEEEEccCC
Q 047325 109 ISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQD--CGLLYTASWDRTFKVWRISDS 186 (368)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~d~~i~iwd~~~~ 186 (368)
++++.... ...+.+|...|.+++|+|+ +.+|++|+.|+.|++||++.+
T Consensus 88 ~~~~~~~~------------------------------~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~ 137 (316)
T 3bg1_A 88 EENGTWEK------------------------------SHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGE 137 (316)
T ss_dssp CSSSCCCE------------------------------EEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSS
T ss_pred CCCCcceE------------------------------EEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCC
Confidence 98653111 1123459999999999997 789999999999999999876
Q ss_pred e---EEEEeecCCCceEEEEeCCC-----------------C-eEEEEcCCCeEEEEEcCCCCCCcccccceeecccccc
Q 047325 187 K---CLESVSAHDDAVNSVVSSSE-----------------G-LIFTGSADGTVKVWKREQHGKGTKHSLAQTLLKQECA 245 (368)
Q Consensus 187 ~---~~~~~~~~~~~v~~~~~~~~-----------------~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~ 245 (368)
. ....+.+|...+.+++|+|+ + +|++|+.|+.|++||++... .......+.+|...
T Consensus 138 ~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~---~~~~~~~l~~h~~~ 214 (316)
T 3bg1_A 138 GQWEVKKINNAHTIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDG---QWKEEQKLEAHSDW 214 (316)
T ss_dssp SCEEECCBTTSSSSCBCCCEECCCCCC------CCSCCCCCCCBEECCBTTSBCCEEEECTTS---CEEEEECCBCCSSC
T ss_pred CCcceeeeeccccCCcceEEEccccCCccccccccccCccccceEEEecCCCeEEEEEeCCCC---ccceeeecccCCCc
Confidence 3 23556678899999999987 3 89999999999999996431 11245567789999
Q ss_pred EEEEEEcCCC----CEEEEecCCCcEEEEeCCCc---cccceeeeccceEE--EEEEeCCCEEEEeeCCCeEEEEecC
Q 047325 246 VTALVVSSSR----SIVYCGSSDGLVNFWEREKQ---LSHGGVLKGHKLAV--LCLAAAGKLVFSGSADKTICVWRRD 314 (368)
Q Consensus 246 i~~~~~~~~~----~~l~~~~~dg~i~i~d~~~~---~~~~~~~~~~~~~~--~~~~~~~~~l~~~~~dg~i~iw~~~ 314 (368)
|.+++|+|++ ++|++++.|++|++||+++. ......+..|...+ ++++|++++|++|+.||.|++|+..
T Consensus 215 V~~v~~sp~~~~~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~las~~~D~~v~lw~~~ 292 (316)
T 3bg1_A 215 VRDVAWAPSIGLPTSTIASCSQDGRVFIWTCDDASSNTWSPKLLHKFNDVVWHVSWSITANILAVSGGDNKVTLWKES 292 (316)
T ss_dssp EEEEECCCCSSCSCCEEEEEETTCEEEEEECSSTTCCCCBCCEEEECSSCEEEEEECTTTCCEEEEESSSCEEEEEEC
T ss_pred eEEEEecCCCCCCCceEEEEcCCCeEEEEEccCccccchhhhhhhcCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEEC
Confidence 9999999986 89999999999999998762 12223445566666 4556789999999999999999875
No 48
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=100.00 E-value=2.5e-39 Score=273.03 Aligned_cols=270 Identities=14% Similarity=0.141 Sum_probs=226.9
Q ss_pred eeccCcCCcEEEEEecCC--EEEEccCCCcEEEEcCCcc-----eecccCCCCCeeEEEEe--CC-EEEEEeCCCeEEEE
Q 047325 38 GSLVREEGHIYSLAASKD--LLYTGSDSKNIRVWKNLKE-----FCGFKASSGLVKAIVIS--GE-KIFTGHQDGKIRVW 107 (368)
Q Consensus 38 ~~~~~h~~~i~~~~~~~~--~l~s~~~dg~i~iw~~~~~-----~~~~~~~~~~v~~~~~~--~~-~l~s~~~dg~i~vw 107 (368)
....+|.+.|++++|+++ +|++|+.||.|++||+... ......|...|.+++|+ ++ +|++|+.||.|++|
T Consensus 5 ~~~~~h~~~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~w 84 (342)
T 1yfq_A 5 QIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKV 84 (342)
T ss_dssp ECSSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEEEE
T ss_pred ecccCCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCCccccceeeeecCCceEEEEECCCCCcEEEEEcCCCeEEEE
Confidence 345689999999999754 9999999999999997632 45566899999999998 78 89999999999999
Q ss_pred ee-cCCCccccccCCccccceeeeeccCCCCceeEecccceeeeee--cCCCEeEEEEcCCCCEEEEEeCCCcEEEEEcc
Q 047325 108 KI-SPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIR--HSDAVSCMSLDQDCGLLYTASWDRTFKVWRIS 184 (368)
Q Consensus 108 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~ 184 (368)
|+ .+++. ..+.+ |...|.+++|+| +++|++++.|+.|++||++
T Consensus 85 d~~~~~~~---------------------------------~~~~~~~~~~~v~~l~~~~-~~~l~s~~~d~~i~iwd~~ 130 (342)
T 1yfq_A 85 DLIGSPSF---------------------------------QALTNNEANLGICRICKYG-DDKLIAASWDGLIEVIDPR 130 (342)
T ss_dssp CSSSSSSE---------------------------------EECBSCCCCSCEEEEEEET-TTEEEEEETTSEEEEECHH
T ss_pred EeccCCce---------------------------------EeccccCCCCceEEEEeCC-CCEEEEEcCCCeEEEEccc
Confidence 99 76642 12234 889999999999 9999999999999999998
Q ss_pred C---------CeEEEEeecCCCceEEEEeCCCCeEEEEcCCCeEEEEEcCC-CCCCcccccceeeccccccEEEEEEcC-
Q 047325 185 D---------SKCLESVSAHDDAVNSVVSSSEGLIFTGSADGTVKVWKREQ-HGKGTKHSLAQTLLKQECAVTALVVSS- 253 (368)
Q Consensus 185 ~---------~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~dg~i~i~d~~~-~~~~~~~~~~~~~~~~~~~i~~~~~~~- 253 (368)
+ ++++..+. |...+.+++|++++ +++++.|+.|++||++. ... ........+...+.+++|+|
T Consensus 131 ~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~-l~~~~~d~~i~i~d~~~~~~~----~~~~~~~~~~~~i~~i~~~~~ 204 (342)
T 1yfq_A 131 NYGDGVIAVKNLNSNNTK-VKNKIFTMDTNSSR-LIVGMNNSQVQWFRLPLCEDD----NGTIEESGLKYQIRDVALLPK 204 (342)
T ss_dssp HHTTBCEEEEESCSSSSS-SCCCEEEEEECSSE-EEEEESTTEEEEEESSCCTTC----CCEEEECSCSSCEEEEEECSG
T ss_pred ccccccccccCCeeeEEe-eCCceEEEEecCCc-EEEEeCCCeEEEEECCccccc----cceeeecCCCCceeEEEECCC
Confidence 8 77777776 88999999999987 99999999999999986 322 12334456778899999999
Q ss_pred CCCEEEEecCCCcEEEEeCCCc-----cccceeeeccce---------EE--EEEEeCCCEEEEeeCCCeEEEEecCCCc
Q 047325 254 SRSIVYCGSSDGLVNFWEREKQ-----LSHGGVLKGHKL---------AV--LCLAAAGKLVFSGSADKTICVWRRDGAI 317 (368)
Q Consensus 254 ~~~~l~~~~~dg~i~i~d~~~~-----~~~~~~~~~~~~---------~~--~~~~~~~~~l~~~~~dg~i~iw~~~~~~ 317 (368)
+++++++++.||.|++|+++.. ......+..|.. .+ ++++|++++|++|+.||.|++||+.+.
T Consensus 205 ~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~- 283 (342)
T 1yfq_A 205 EQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTR- 283 (342)
T ss_dssp GGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTT-
T ss_pred CCCEEEEEecCCcEEEEEEcCCCcccccccceeeecccccccccccceeEEEEEEcCCCCEEEEecCCceEEEEcCccH-
Confidence 9999999999999999999876 244456666633 55 555678999999999999999999876
Q ss_pred eeeeEeeecc-ccCeeEEEEecCCeeeecCCcceEEEEEeeCCcccc
Q 047325 318 HTCLSVLTGH-TGPVKCLAVEEDRDSSSSTSSCAQRWIVYSGSLDKS 363 (368)
Q Consensus 318 ~~~~~~~~~h-~~~v~~l~~~~~~~~~~~~~~~~~~w~l~sg~~D~~ 363 (368)
+.+..+.+| ..+|++++ |++. .|++|+.||.
T Consensus 284 -~~~~~~~~~h~~~v~~~~--~~~~------------~l~s~s~Dg~ 315 (342)
T 1yfq_A 284 -KKIKNFAKFNEDSVVKIA--CSDN------------ILCLATSDDT 315 (342)
T ss_dssp -EEEEECCCCSSSEEEEEE--ECSS------------EEEEEEECTH
T ss_pred -hHhhhhhcccCCCceEec--CCCC------------eEEEEecCCc
Confidence 677888888 99999999 9998 6888888887
No 49
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4.9e-40 Score=284.87 Aligned_cols=276 Identities=15% Similarity=0.233 Sum_probs=221.9
Q ss_pred CCcEEEEEecCC---EEEEc----------cCCCcEEEEcCCcc----eecccCCCCCeeEEEEe--CCEEEEEeCCCeE
Q 047325 44 EGHIYSLAASKD---LLYTG----------SDSKNIRVWKNLKE----FCGFKASSGLVKAIVIS--GEKIFTGHQDGKI 104 (368)
Q Consensus 44 ~~~i~~~~~~~~---~l~s~----------~~dg~i~iw~~~~~----~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i 104 (368)
...|.+++|+++ +|++| +.|+.|++||+... ......|...|.+++|+ +.+|++++.||.|
T Consensus 12 ~~~v~~~~~sp~g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v 91 (416)
T 2pm9_A 12 FSRTATFAWSHDKIPLLVSGTVSGTVDANFSTDSSLELWSLLAADSEKPIASLQVDSKFNDLDWSHNNKIIAGALDNGSL 91 (416)
T ss_dssp EEESCBCCBCSSSSCEEEEBCBSSCCCSSCCCCCCCEEEESSSGGGCSCSCCCCCSSCEEEEEECSSSSCEEEEESSSCE
T ss_pred hhhcceEeeCCCCCCEEEEEecCcccccccCCCCeEEEEEccCCCCCcEEEEEecCCceEEEEECCCCCeEEEEccCCeE
Confidence 346778888754 89999 89999999998754 22334688999999998 7899999999999
Q ss_pred EEEeecCCCccccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcCC-CCEEEEEeCCCcEEEEEc
Q 047325 105 RVWKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQD-CGLLYTASWDRTFKVWRI 183 (368)
Q Consensus 105 ~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~d~~i~iwd~ 183 (368)
++||+....... .....+.+|...|.+++|+|+ +++|++++.|+.|++||+
T Consensus 92 ~vw~~~~~~~~~----------------------------~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~ 143 (416)
T 2pm9_A 92 ELYSTNEANNAI----------------------------NSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDM 143 (416)
T ss_dssp EEECCSSTTSCC----------------------------CEEEECCCSSSCCCEEEECSSSTTBEEEECSSSCEEBCBT
T ss_pred EEeecccccccc----------------------------cchhhccCCccceEEEEEcCCCCCEEEEEcCCCeEEEEEC
Confidence 999998732100 011223449999999999998 899999999999999999
Q ss_pred cCCe------EEE---EeecCCCceEEEEeCCC-C-eEEEEcCCCeEEEEEcCCCCCCcccccceeeccc------cccE
Q 047325 184 SDSK------CLE---SVSAHDDAVNSVVSSSE-G-LIFTGSADGTVKVWKREQHGKGTKHSLAQTLLKQ------ECAV 246 (368)
Q Consensus 184 ~~~~------~~~---~~~~~~~~v~~~~~~~~-~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~------~~~i 246 (368)
.+++ ... .+..|...|.+++|+|+ + .+++++.|+.|++||++... ....+..+ ...+
T Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~------~~~~~~~~~~~~~~~~~v 217 (416)
T 2pm9_A 144 NKCTESPSNYTPLTPGQSMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAKK------EVIHLSYTSPNSGIKQQL 217 (416)
T ss_dssp TTTSSCTTTCCCBCCCCSCCSSCCCCEEEECSSCTTEEEEESSSSCEEEEETTTTE------EEEEECCCCCSSCCCCCE
T ss_pred CCCccccccccccccccccCCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECCCCC------cceEEeccccccccCCce
Confidence 9876 333 34678899999999998 4 89999999999999998752 33344443 7889
Q ss_pred EEEEEcCCC-CEEEEecCCC---cEEEEeCCCccccceeee-ccceEEEEEE--e-CCCEEEEeeCCCeEEEEecCCCce
Q 047325 247 TALVVSSSR-SIVYCGSSDG---LVNFWEREKQLSHGGVLK-GHKLAVLCLA--A-AGKLVFSGSADKTICVWRRDGAIH 318 (368)
Q Consensus 247 ~~~~~~~~~-~~l~~~~~dg---~i~i~d~~~~~~~~~~~~-~~~~~~~~~~--~-~~~~l~~~~~dg~i~iw~~~~~~~ 318 (368)
.+++|+|++ .++++++.|+ .|++||+++.......+. +|...+.++. | ++++|++++.||.|++||+.+.
T Consensus 218 ~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~~-- 295 (416)
T 2pm9_A 218 SVVEWHPKNSTRVATATGSDNDPSILIWDLRNANTPLQTLNQGHQKGILSLDWCHQDEHLLLSSGRDNTVLLWNPESA-- 295 (416)
T ss_dssp EEEEECSSCTTEEEEEECCSSSCCCCEEETTSTTSCSBCCCSCCSSCEEEEEECSSCSSCEEEEESSSEEEEECSSSC--
T ss_pred EEEEECCCCCCEEEEEECCCCCceEEEEeCCCCCCCcEEeecCccCceeEEEeCCCCCCeEEEEeCCCCEEEeeCCCC--
Confidence 999999987 6899999998 999999998655555666 7887776555 5 7899999999999999998876
Q ss_pred eeeEeeeccccCeeEEEEecCC-eeeecCCcceEEEEEeeCCcccccccC
Q 047325 319 TCLSVLTGHTGPVKCLAVEEDR-DSSSSTSSCAQRWIVYSGSLDKSDDDV 367 (368)
Q Consensus 319 ~~~~~~~~h~~~v~~l~~~~~~-~~~~~~~~~~~~w~l~sg~~D~~v~i~ 367 (368)
+.+..+.+|..+|++++|+|++ . .+++++.|+.|++|
T Consensus 296 ~~~~~~~~~~~~v~~~~~s~~~~~------------~l~s~~~d~~i~iw 333 (416)
T 2pm9_A 296 EQLSQFPARGNWCFKTKFAPEAPD------------LFACASFDNKIEVQ 333 (416)
T ss_dssp CEEEEEECSSSCCCCEEECTTCTT------------EEEECCSSSEEEEE
T ss_pred ccceeecCCCCceEEEEECCCCCC------------EEEEEecCCcEEEE
Confidence 6788889999999999999998 6 45555556655555
No 50
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=100.00 E-value=5e-39 Score=265.39 Aligned_cols=246 Identities=17% Similarity=0.263 Sum_probs=196.1
Q ss_pred ecccCCCCCeeEEEEe--CCEEEEEeCCCeEEEEeecCCCccccccCCccccceeeeeccCCCCceeEecccceeeeeec
Q 047325 76 CGFKASSGLVKAIVIS--GEKIFTGHQDGKIRVWKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRH 153 (368)
Q Consensus 76 ~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (368)
..+.+|...|.+++|+ +++|++|+.|++|++||+...... ....+.+|
T Consensus 3 ~~~~~h~~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~~~------------------------------~~~~l~gH 52 (297)
T 2pm7_B 3 VIANAHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGETHK------------------------------LIDTLTGH 52 (297)
T ss_dssp EECCSCSSCEEEEEECTTSSEEEEEETTSCEEEEEBCSSCBC------------------------------CCEEECCC
T ss_pred eeccCCcCceEEEEECCCCCEEEEEeCCCEEEEEecCCCCcE------------------------------EEEEEccc
Confidence 4567899999999998 889999999999999999753211 12234569
Q ss_pred CCCEeEEEEcCC--CCEEEEEeCCCcEEEEEccCCe--EEEEeecCCCceEEEEeCCC--C-eEEEEcCCCeEEEEEcCC
Q 047325 154 SDAVSCMSLDQD--CGLLYTASWDRTFKVWRISDSK--CLESVSAHDDAVNSVVSSSE--G-LIFTGSADGTVKVWKREQ 226 (368)
Q Consensus 154 ~~~v~~~~~~~~--~~~l~~~~~d~~i~iwd~~~~~--~~~~~~~~~~~v~~~~~~~~--~-~l~~~~~dg~i~i~d~~~ 226 (368)
...|.+++|+++ +++|++|+.|++|++||+++++ .+..+..|...|.+++|+|+ + +|++++.|+.|++||++.
T Consensus 53 ~~~V~~v~~s~~~~g~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~ 132 (297)
T 2pm7_B 53 EGPVWRVDWAHPKFGTILASCSYDGKVMIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKE 132 (297)
T ss_dssp SSCEEEEEECCGGGCSEEEEEETTTEEEEEEBSSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCS
T ss_pred cCCeEEEEecCCCcCCEEEEEcCCCEEEEEEcCCCceEEEEEeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecC
Confidence 999999999863 8899999999999999998874 56677889999999999997 5 899999999999999986
Q ss_pred CCCCcccccceeeccccccEEEEEEcCC-------------CCEEEEecCCCcEEEEeCCCccc---cceeeeccceEEE
Q 047325 227 HGKGTKHSLAQTLLKQECAVTALVVSSS-------------RSIVYCGSSDGLVNFWEREKQLS---HGGVLKGHKLAVL 290 (368)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~-------------~~~l~~~~~dg~i~i~d~~~~~~---~~~~~~~~~~~~~ 290 (368)
... .....+..|...|.+++|+|+ +++|++|+.|+.|++||+++... ....+.+|...|.
T Consensus 133 ~~~----~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H~~~V~ 208 (297)
T 2pm7_B 133 NGT----TSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVR 208 (297)
T ss_dssp SSC----BCCEEEECCSSCEEEEEECCCC------------CCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEE
T ss_pred CCc----eeeeeeecccCccceEeecCCcccccccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEecCCCCceE
Confidence 522 113456788999999999997 57999999999999999986542 3346678888886
Q ss_pred EEE--eC---CCEEEEeeCCCeEEEEecCCCceee-eEee--eccccCeeEEEEecCCeeeecCCcceEEEEEeeCCccc
Q 047325 291 CLA--AA---GKLVFSGSADKTICVWRRDGAIHTC-LSVL--TGHTGPVKCLAVEEDRDSSSSTSSCAQRWIVYSGSLDK 362 (368)
Q Consensus 291 ~~~--~~---~~~l~~~~~dg~i~iw~~~~~~~~~-~~~~--~~h~~~v~~l~~~~~~~~~~~~~~~~~~w~l~sg~~D~ 362 (368)
++. |+ +.+|++|+.|++|++||++...... ...+ ..|...|.+++|+|+++ .|++++.|+
T Consensus 209 ~v~~sp~~~~~~~las~s~D~~v~iWd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~------------~las~~~D~ 276 (297)
T 2pm7_B 209 DVAWSPTVLLRSYMASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGN------------VLALSGGDN 276 (297)
T ss_dssp EEEECCCCSSSEEEEEEETTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSC------------CEEEEETTS
T ss_pred EEEECCCCCCceEEEEEECCCcEEEEEeCCCCCccceeeeecccCCCcEEEEEECCCCC------------EEEEEcCCC
Confidence 655 55 3799999999999999997643211 1222 56888999999999999 455666666
Q ss_pred ccccC
Q 047325 363 SDDDV 367 (368)
Q Consensus 363 ~v~i~ 367 (368)
+|++|
T Consensus 277 ~v~lw 281 (297)
T 2pm7_B 277 KVTLW 281 (297)
T ss_dssp CEEEE
T ss_pred cEEEE
Confidence 66665
No 51
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=100.00 E-value=2.5e-39 Score=272.90 Aligned_cols=250 Identities=21% Similarity=0.325 Sum_probs=200.0
Q ss_pred ceecccCCCC-CeeEEEEe--CCEEEEEeCCCeEEEEeecCCCccccccCCccccceeeeeccCCCCceeEecccceeee
Q 047325 74 EFCGFKASSG-LVKAIVIS--GEKIFTGHQDGKIRVWKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALW 150 (368)
Q Consensus 74 ~~~~~~~~~~-~v~~~~~~--~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (368)
.+..+.+|.. .|.+++|+ +++|++|+.|++|++||++++...... ...
T Consensus 7 ~~~~~~~h~~~~v~~l~~sp~g~~las~~~D~~i~iw~~~~~~~~~~~-----------------------------~~~ 57 (345)
T 3fm0_A 7 LLGRVPAHPDSRCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWICKS-----------------------------VLS 57 (345)
T ss_dssp EEEEECCSTTSCEEEEEECTTSSCEEEEETTSCEEEEEEETTEEEEEE-----------------------------EEC
T ss_pred EeeeecCCCCCcEEEEEECCCCCEEEEEcCCCeEEEEEcCCCcceeee-----------------------------eec
Confidence 3456778887 99999998 889999999999999999876421110 011
Q ss_pred eecCCCEeEEEEcCCCCEEEEEeCCCcEEEEEccCC--eEEEEeecCCCceEEEEeCCCC-eEEEEcCCCeEEEEEcCCC
Q 047325 151 IRHSDAVSCMSLDQDCGLLYTASWDRTFKVWRISDS--KCLESVSAHDDAVNSVVSSSEG-LIFTGSADGTVKVWKREQH 227 (368)
Q Consensus 151 ~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~--~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~dg~i~i~d~~~~ 227 (368)
.+|...|.+++|+|++++|++|+.|+.|++||+.++ +++..+.+|...|.+++|+|++ +|++++.|+.|++||++..
T Consensus 58 ~~h~~~v~~~~~sp~g~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~ 137 (345)
T 3fm0_A 58 EGHQRTVRKVAWSPCGNYLASASFDATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEE 137 (345)
T ss_dssp SSCSSCEEEEEECTTSSEEEEEETTSCEEEEEECCC-EEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEECTT
T ss_pred cccCCcEEEEEECCCCCEEEEEECCCcEEEEEccCCCeEEEEEccCCCCCceEEEEeCCCCEEEEEECCCeEEEEECCCC
Confidence 349999999999999999999999999999999876 4678889999999999999999 9999999999999999765
Q ss_pred CCCcccccceeeccccccEEEEEEcCCCCEEEEecCCCcEEEEeCCCcc-ccceeeeccceEEEE--EEeCCCEEEEeeC
Q 047325 228 GKGTKHSLAQTLLKQECAVTALVVSSSRSIVYCGSSDGLVNFWEREKQL-SHGGVLKGHKLAVLC--LAAAGKLVFSGSA 304 (368)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~-~~~~~~~~~~~~~~~--~~~~~~~l~~~~~ 304 (368)
. .......+..|...|.+++|+|++++|++++.|+.|++||.+... .....+.+|...|.+ ++|++++|++|+.
T Consensus 138 ~---~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~i~~w~~~~~~~~~~~~~~~h~~~v~~l~~sp~g~~l~s~s~ 214 (345)
T 3fm0_A 138 D---EYECVSVLNSHTQDVKHVVWHPSQELLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCSD 214 (345)
T ss_dssp S---CEEEEEEECCCCSCEEEEEECSSSSCEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECTTSSEEEEEET
T ss_pred C---CeEEEEEecCcCCCeEEEEECCCCCEEEEEeCCCcEEEEEecCCCEEEEEEecCCCCceEEEEECCCCCEEEEEeC
Confidence 2 223455677899999999999999999999999999999988654 233566788877755 4568999999999
Q ss_pred CCeEEEEecCCC-------------ceeeeEeeec-cccCeeEEEEecCCeeeecC--CcceEEEEE
Q 047325 305 DKTICVWRRDGA-------------IHTCLSVLTG-HTGPVKCLAVEEDRDSSSST--SSCAQRWIV 355 (368)
Q Consensus 305 dg~i~iw~~~~~-------------~~~~~~~~~~-h~~~v~~l~~~~~~~~~~~~--~~~~~~w~l 355 (368)
|++|++|+.... ...++..+.+ |...|.+++|+|++..++++ ++.+++|.+
T Consensus 215 D~~v~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~vw~~ 281 (345)
T 3fm0_A 215 DRTVRIWRQYLPGNEQGVACSGSDPSWKCICTLSGFHSRTIYDIAWCQLTGALATACGDDAIRVFQE 281 (345)
T ss_dssp TSCEEEEEEECTTCTTCCCCC---CEEEEEEEECSSCSSCEEEEEECTTTCCEEEEETTSCEEEEEE
T ss_pred CCeEEEeccccCCCCccceeeccCCccceeEEecCCCCCcEEEEEEecCCCEEEEEeCCCeEEEEEe
Confidence 999999986321 1234445555 88899999999999955443 233444544
No 52
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.3e-39 Score=281.24 Aligned_cols=288 Identities=11% Similarity=0.138 Sum_probs=231.1
Q ss_pred cCCcEEEEEecCC--EEEEccCCCcEEEEcCC-cceecccCCCCCeeEEEEe--CCEEEEEeCCCeEEEEeecCCCcccc
Q 047325 43 EEGHIYSLAASKD--LLYTGSDSKNIRVWKNL-KEFCGFKASSGLVKAIVIS--GEKIFTGHQDGKIRVWKISPKNQSVH 117 (368)
Q Consensus 43 h~~~i~~~~~~~~--~l~s~~~dg~i~iw~~~-~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~vw~~~~~~~~~~ 117 (368)
|.+.|.+++|+++ +|++|+.||.|++||.. .....+..|...|.+++|+ +++|++++.||.|++||+.+++....
T Consensus 107 ~~~~v~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~ 186 (425)
T 1r5m_A 107 TTNQVTCLAWSHDGNSIVTGVENGELRLWNKTGALLNVLNFHRAPIVSVKWNKDGTHIISMDVENVTILWNVISGTVMQH 186 (425)
T ss_dssp -CBCEEEEEECTTSSEEEEEETTSCEEEEETTSCEEEEECCCCSCEEEEEECTTSSEEEEEETTCCEEEEETTTTEEEEE
T ss_pred CCCceEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeeeeccCCCccEEEEEECCCCCEEEEEecCCeEEEEECCCCcEEEE
Confidence 7889999999855 99999999999999955 3456778899999999998 78999999999999999987764433
Q ss_pred ccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcCCCCEEEEEeCCCcEEEEEccCCeEEEEeecCCC
Q 047325 118 KRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCGLLYTASWDRTFKVWRISDSKCLESVSAHDD 197 (368)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~ 197 (368)
.......... ............+.++.|+|++ .+++++.|+.|++||+.+++.+..+..|..
T Consensus 187 ~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~ 248 (425)
T 1r5m_A 187 FELKETGGSS-----------------INAENHSGDGSLGVDVEWVDDD-KFVIPGPKGAIFVYQITEKTPTGKLIGHHG 248 (425)
T ss_dssp ECCC--------------------------------CCCBSCCEEEETT-EEEEECGGGCEEEEETTCSSCSEEECCCSS
T ss_pred eeccccCccc-----------------eeeccccCCcceeeEEEEcCCC-EEEEEcCCCeEEEEEcCCCceeeeeccCCC
Confidence 2221100000 0000011123338899999874 688999999999999999999999999999
Q ss_pred ceEEEEeCCCC-eEEEEcCCCeEEEEEcCCCCCCcccccceeeccccccEEEEEEcCCCCEEEEecCCCcEEEEeCCCcc
Q 047325 198 AVNSVVSSSEG-LIFTGSADGTVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSSSRSIVYCGSSDGLVNFWEREKQL 276 (368)
Q Consensus 198 ~v~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~ 276 (368)
.|.+++|+|++ +|++++.|+.|++||++.. .....+..|...+.+++|+|++ ++++++.||.|++||+++..
T Consensus 249 ~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~------~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~ 321 (425)
T 1r5m_A 249 PISVLEFNDTNKLLLSASDDGTLRIWHGGNG------NSQNCFYGHSQSIVSASWVGDD-KVISCSMDGSVRLWSLKQNT 321 (425)
T ss_dssp CEEEEEEETTTTEEEEEETTSCEEEECSSSB------SCSEEECCCSSCEEEEEEETTT-EEEEEETTSEEEEEETTTTE
T ss_pred ceEEEEECCCCCEEEEEcCCCEEEEEECCCC------ccceEecCCCccEEEEEECCCC-EEEEEeCCCcEEEEECCCCc
Confidence 99999999999 9999999999999999865 2456667789999999999999 99999999999999998876
Q ss_pred ccceeeeccceEEE--EEEeCCCEEEEeeCCCeEEEEecCCCc------------------eeeeEeeecccc--CeeEE
Q 047325 277 SHGGVLKGHKLAVL--CLAAAGKLVFSGSADKTICVWRRDGAI------------------HTCLSVLTGHTG--PVKCL 334 (368)
Q Consensus 277 ~~~~~~~~~~~~~~--~~~~~~~~l~~~~~dg~i~iw~~~~~~------------------~~~~~~~~~h~~--~v~~l 334 (368)
.. ..+..|...+. +++|++++|++++.||.|++||+.... ...+..+..|.. .|+++
T Consensus 322 ~~-~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 400 (425)
T 1r5m_A 322 LL-ALSIVDGVPIFAGRISQDGQKYAVAFMDGQVNVYDLKKLNSKSRSLYGNRDGILNPLPIPLYASYQSSQDNDYIFDL 400 (425)
T ss_dssp EE-EEEECTTCCEEEEEECTTSSEEEEEETTSCEEEEECHHHHC--------------CEECCEEEEECCTTCCCCEEEE
T ss_pred Ee-EecccCCccEEEEEEcCCCCEEEEEECCCeEEEEECCCCccceeeeecccccccCcccchhhhhhcCcccCCceEEE
Confidence 55 45556666664 555689999999999999999987652 116788888976 99999
Q ss_pred EEecCCeeeecCCcceEEEEEeeCCcccccccCC
Q 047325 335 AVEEDRDSSSSTSSCAQRWIVYSGSLDKSDDDVH 368 (368)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~w~l~sg~~D~~v~i~h 368 (368)
+|+|++. .|++++.||.|++|.
T Consensus 401 ~~s~~~~------------~l~~~~~dg~i~iw~ 422 (425)
T 1r5m_A 401 SWNCAGN------------KISVAYSLQEGSVVA 422 (425)
T ss_dssp EECTTSS------------EEEEEESSSCCEEEE
T ss_pred EccCCCc------------eEEEEecCceEEEEe
Confidence 9999999 688888999999883
No 53
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=100.00 E-value=9.3e-39 Score=277.20 Aligned_cols=266 Identities=17% Similarity=0.249 Sum_probs=211.1
Q ss_pred eeeccCcCCcEEEE-Eec--CCEEEEccCCCcEEEEcCCcc--eecccCCCCCeeEEEEe--CCEEEEEeCCCeEEEEee
Q 047325 37 IGSLVREEGHIYSL-AAS--KDLLYTGSDSKNIRVWKNLKE--FCGFKASSGLVKAIVIS--GEKIFTGHQDGKIRVWKI 109 (368)
Q Consensus 37 ~~~~~~h~~~i~~~-~~~--~~~l~s~~~dg~i~iw~~~~~--~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~vw~~ 109 (368)
...+..| .+.++ .++ +++|++|+.||.|++||+... ...+..|...|.+++|+ +++|++|+.||.|++||+
T Consensus 91 ~~~~~~~--~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~ 168 (420)
T 3vl1_A 91 SKMLKRA--DYTAVDTAKLQMRRFILGTTEGDIKVLDSNFNLQREIDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSV 168 (420)
T ss_dssp TTTSCSC--CEEEEEEECSSSCEEEEEETTSCEEEECTTSCEEEEETTSSSSCEEEEEECTTSSEEEEEETTSEEEEEET
T ss_pred eeEEecC--CceEEEEEecCCCEEEEEECCCCEEEEeCCCcceeeecccccCccEEEEECCCCCEEEEEeCCCeEEEEeC
Confidence 3334444 33333 444 559999999999999998744 44567999999999998 779999999999999999
Q ss_pred cCCCccccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcCCCCEEEEEeCCCcEEEEEccCCeEE
Q 047325 110 SPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCGLLYTASWDRTFKVWRISDSKCL 189 (368)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~ 189 (368)
.+++... .+.+|...|.+++|+|++++|++++.|+.|++||+++++.+
T Consensus 169 ~~~~~~~--------------------------------~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~ 216 (420)
T 3vl1_A 169 KDGSNPR--------------------------------TLIGHRATVTDIAIIDRGRNVLSASLDGTIRLWECGTGTTI 216 (420)
T ss_dssp TTCCCCE--------------------------------EEECCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTEEE
T ss_pred CCCcCce--------------------------------EEcCCCCcEEEEEEcCCCCEEEEEcCCCcEEEeECCCCcee
Confidence 8765322 23459999999999999999999999999999999999999
Q ss_pred EEeecC---C---------------------CceEEEEeCCCC-eEEEEcCCCeEEEEEcCCCCCCcccccceeeccccc
Q 047325 190 ESVSAH---D---------------------DAVNSVVSSSEG-LIFTGSADGTVKVWKREQHGKGTKHSLAQTLLKQEC 244 (368)
Q Consensus 190 ~~~~~~---~---------------------~~v~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~ 244 (368)
..+..+ . ..+.+++|+|++ +|++++.||.|++||++.... .......|..
T Consensus 217 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~-----~~~~~~~~~~ 291 (420)
T 3vl1_A 217 HTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHVSGVITVHNVFSKEQ-----TIQLPSKFTC 291 (420)
T ss_dssp EEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEEETTSCEEEEETTTCCE-----EEEECCTTSS
T ss_pred EEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCCCEEEEEcCCCeEEEEECCCCce-----eEEcccccCC
Confidence 888753 2 344455567888 999999999999999986532 2333446788
Q ss_pred cEEEEEEcCCCC-EEEEecCCCcEEEEeCCCccccceeeec-cceEEEEE-EeCCCEEEEeeCCCeEEEEecCCCce---
Q 047325 245 AVTALVVSSSRS-IVYCGSSDGLVNFWEREKQLSHGGVLKG-HKLAVLCL-AAAGKLVFSGSADKTICVWRRDGAIH--- 318 (368)
Q Consensus 245 ~i~~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~-~~~~~~~~-~~~~~~l~~~~~dg~i~iw~~~~~~~--- 318 (368)
.+.+++|+|+++ +|++|+.||.|++||++++..+...+.. |...+.++ .+++++|++++.||.|++|++.....
T Consensus 292 ~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~s~~~d~~v~iw~~~~~~~~~~ 371 (420)
T 3vl1_A 292 SCNSLTVDGNNANYIYAGYENGMLAQWDLRSPECPVGEFLINEGTPINNVYFAAGALFVSSGFDTSIKLDIISDPESERP 371 (420)
T ss_dssp CEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEEESTTSCEEEEEEETTEEEEEETTTEEEEEEEECCTTCCSC
T ss_pred CceeEEEeCCCCCEEEEEeCCCeEEEEEcCCCcCchhhhhccCCCCceEEEeCCCCEEEEecCCccEEEEeccCCCCCcc
Confidence 999999999998 9999999999999999987664455554 55556444 45788999999999999999875311
Q ss_pred ----eeeEeeeccccCeeEEEEecCCe
Q 047325 319 ----TCLSVLTGHTGPVKCLAVEEDRD 341 (368)
Q Consensus 319 ----~~~~~~~~h~~~v~~l~~~~~~~ 341 (368)
.....+..|...|.+++|+|++.
T Consensus 372 ~~~~~~~~~~~~~~~~v~~~~~s~~~~ 398 (420)
T 3vl1_A 372 AIEFETPTFLVSNDDAVSQFCYVSDDE 398 (420)
T ss_dssp EECTTSCEEECCSSCCCCEEEEECCSS
T ss_pred ceeccCccEEccCCcceEEEEEccCCC
Confidence 11223567889999999999988
No 54
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=9.9e-39 Score=267.58 Aligned_cols=236 Identities=22% Similarity=0.317 Sum_probs=186.5
Q ss_pred ceecccCCCCCeeEEEEeCCEEEEEeCCCeEEEEeecCCCccccccCCccccceeeeeccCCCCceeEecccceeee-e-
Q 047325 74 EFCGFKASSGLVKAIVISGEKIFTGHQDGKIRVWKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALW-I- 151 (368)
Q Consensus 74 ~~~~~~~~~~~v~~~~~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~- 151 (368)
.+..+.+|...|.+++|++++|++|+.||+|++||+..+..... ..+ .
T Consensus 6 ~~~~~~~h~~~v~~~~~s~~~las~~~D~~i~lw~~~~~~~~~~------------------------------~~~~~~ 55 (330)
T 2hes_X 6 LIKSLKLYKEKIWSFDFSQGILATGSTDRKIKLVSVKYDDFTLI------------------------------DVLDET 55 (330)
T ss_dssp EEEEEECCSSCEEEEEEETTEEEEEESSSCEEEEECSSSCCEEE------------------------------EEECTT
T ss_pred cceeeccCCCceeeeccCCCEEEEEcCCCEEEEEEecCCCeEEE------------------------------EEEecC
Confidence 35567899999999999988999999999999999976531110 011 1
Q ss_pred ecCCCEeEEEEcCCCCEEEEEeCCCcEEEEEccC-------CeEEEEeecCCCceEEEEeCCCC-eEEEEcCCCeEEEEE
Q 047325 152 RHSDAVSCMSLDQDCGLLYTASWDRTFKVWRISD-------SKCLESVSAHDDAVNSVVSSSEG-LIFTGSADGTVKVWK 223 (368)
Q Consensus 152 ~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~-------~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~dg~i~i~d 223 (368)
+|...|.+++|+|++++|++++.|+.|++||+.. .+++..+.+|...|.+++|+|++ +|++++.|+.|++||
T Consensus 56 ~h~~~v~~v~~sp~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g~~las~s~D~~v~iwd 135 (330)
T 2hes_X 56 AHKKAIRSVAWRPHTSLLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWE 135 (330)
T ss_dssp CCCSCEEEEEECTTSSEEEEEETTSCEEEEEC-------CCCEEEEEEC----CEEEEEECTTSCEEEEEETTSCEEEEE
T ss_pred CccCCEEEEEECCCCCEEEEEeCCCcEEEEEcccCcCccccceeEEEEcCCCCcEEEEEECCCCCEEEEEeCCCEEEEEe
Confidence 2889999999999999999999999999999853 45677889999999999999999 999999999999999
Q ss_pred cCCCCCCcccccceeeccccccEEEEEEcCCCCEEEEecCCCcEEEEeCCCcc-ccceeeeccceEEEEEE--eC--CCE
Q 047325 224 REQHGKGTKHSLAQTLLKQECAVTALVVSSSRSIVYCGSSDGLVNFWEREKQL-SHGGVLKGHKLAVLCLA--AA--GKL 298 (368)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~-~~~~~~~~~~~~~~~~~--~~--~~~ 298 (368)
++.... .......+.+|...|.+++|+|++++|++++.|+.|++||..+.. .....+.+|...+.++. |+ +.+
T Consensus 136 ~~~~~~--~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~iW~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~ 213 (330)
T 2hes_X 136 TDESGE--EYECISVLQEHSQDVKHVIWHPSEALLASSSYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEGVFR 213 (330)
T ss_dssp CCTTCC--CCEEEEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCSSSSCE
T ss_pred ccCCCC--CeEEEEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCCeeEEEEccCCCCcEEEEEecCCCCeeE
Confidence 964321 123455677899999999999999999999999999999987542 33456778888886655 45 568
Q ss_pred EEEeeCCCeEEEEecCCCc------eeeeEeeec-cccCeeEEEEecCCe
Q 047325 299 VFSGSADKTICVWRRDGAI------HTCLSVLTG-HTGPVKCLAVEEDRD 341 (368)
Q Consensus 299 l~~~~~dg~i~iw~~~~~~------~~~~~~~~~-h~~~v~~l~~~~~~~ 341 (368)
|++|+.|++|++||+.... ......+.+ |..+|++++|++++.
T Consensus 214 l~s~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~ 263 (330)
T 2hes_X 214 LCSGSDDSTVRVWKYMGDDEDDQQEWVCEAILPDVHKRQVYNVAWGFNGL 263 (330)
T ss_dssp EEEEETTSCEEEEEEEEECTTSCEEEEEEEECCSCCSSCEEEEEECTTSC
T ss_pred EEEEeCCCeEEEEEecCCCccccceeEEeeecccccccceEEEEEcCCCE
Confidence 9999999999999986431 133444554 899999999998764
No 55
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=100.00 E-value=4.2e-38 Score=276.62 Aligned_cols=288 Identities=19% Similarity=0.325 Sum_probs=232.0
Q ss_pred ccCCCceeeeccCcCCcEEEEEecCC-EEEEccCCCcEEEEcCCc--ceecccCCCCCeeEEEEe----CCEEEEEeCCC
Q 047325 30 NLPQNGLIGSLVREEGHIYSLAASKD-LLYTGSDSKNIRVWKNLK--EFCGFKASSGLVKAIVIS----GEKIFTGHQDG 102 (368)
Q Consensus 30 ~~~~~~~~~~~~~h~~~i~~~~~~~~-~l~s~~~dg~i~iw~~~~--~~~~~~~~~~~v~~~~~~----~~~l~s~~~dg 102 (368)
++...+.+..+.+|.+.|.+++|+++ +|++|+.||+|++||+.+ ....+.+|...|.++++. +.++++|+.||
T Consensus 148 d~~~~~~~~~~~~h~~~V~~l~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~l~s~s~d~ 227 (464)
T 3v7d_B 148 DSINKKFLLQLSGHDGGVWALKYAHGGILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDN 227 (464)
T ss_dssp ETTTTEEEEEECCCSSCEEEEEECSTTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEEESSSCEEEEEEETTS
T ss_pred ECCCCcEEEEEeCCCcCEEEEEEcCCCEEEEEeCCCCEEEEECCCCcEEEEECCCCCccEEEEEecCCCCCEEEEEcCCC
Confidence 45667788889999999999999866 999999999999999875 456788999999999997 47899999999
Q ss_pred eEEEEeecCCCccccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcCCCCEEEEEeCCCcEEEEE
Q 047325 103 KIRVWKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCGLLYTASWDRTFKVWR 182 (368)
Q Consensus 103 ~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd 182 (368)
.|++||+.+.............. ....... ........+.+|...|.++ +++++++++++.|+.|++||
T Consensus 228 ~i~vwd~~~~~~~~~~~~~~~~~--~~~~~~~-------~~~~~~~~~~~~~~~v~~~--~~~~~~l~~~~~d~~i~vwd 296 (464)
T 3v7d_B 228 TLHVWKLPKESSVPDHGEEHDYP--LVFHTPE-------ENPYFVGVLRGHMASVRTV--SGHGNIVVSGSYDNTLIVWD 296 (464)
T ss_dssp CEEEEECCCCCCC------CCSS--EEESCGG-------GCTTEEEEECCCSSCEEEE--EEETTEEEEEETTSCEEEEE
T ss_pred cEEEeeCCCCcccccccccCCcc--eEeeccC-------CCeEEEEEccCccceEEEE--cCCCCEEEEEeCCCeEEEEE
Confidence 99999998876433222111000 0000000 0011133456788888887 46788999999999999999
Q ss_pred ccCCeEEEEeecCCCceEEEEeCCCC-eEEEEcCCCeEEEEEcCCCCCCcccccceeeccccccEEEEEEcCCCCEEEEe
Q 047325 183 ISDSKCLESVSAHDDAVNSVVSSSEG-LIFTGSADGTVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSSSRSIVYCG 261 (368)
Q Consensus 183 ~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~ 261 (368)
+.+++++..+.+|...|.+++|+|++ .+++|+.||.|++||++.+ .....+..|...|.+++++ +++|+++
T Consensus 297 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~------~~~~~~~~h~~~v~~~~~~--~~~l~s~ 368 (464)
T 3v7d_B 297 VAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENG------ELMYTLQGHTALVGLLRLS--DKFLVSA 368 (464)
T ss_dssp TTTTEEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTT------EEEEEECCCSSCEEEEEEC--SSEEEEE
T ss_pred CCCCcEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCC------cEEEEEeCCCCcEEEEEEc--CCEEEEE
Confidence 99999999999999999999999998 9999999999999999865 3567788899999999997 5899999
Q ss_pred cCCCcEEEEeCCCccccceeeeccceEEEEEEeCCCEEEEeeCCCeEEEEecCCCceeeeEe-eeccccCeeEEEEecC
Q 047325 262 SSDGLVNFWEREKQLSHGGVLKGHKLAVLCLAAAGKLVFSGSADKTICVWRRDGAIHTCLSV-LTGHTGPVKCLAVEED 339 (368)
Q Consensus 262 ~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~-~~~h~~~v~~l~~~~~ 339 (368)
+.||.|++||+++..........+...+.++++++++|++|+ ||.|++||+.++ +.+.. +..|..+|++++|+++
T Consensus 369 s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-dg~i~iwd~~~g--~~~~~~~~~~~~~v~~v~~~~~ 444 (464)
T 3v7d_B 369 AADGSIRGWDANDYSRKFSYHHTNLSAITTFYVSDNILVSGS-ENQFNIYNLRSG--KLVHANILKDADQIWSVNFKGK 444 (464)
T ss_dssp ETTSEEEEEETTTCCEEEEEECTTCCCEEEEEECSSEEEEEE-TTEEEEEETTTC--CEEESCTTTTCSEEEEEEEETT
T ss_pred eCCCcEEEEECCCCceeeeecCCCCccEEEEEeCCCEEEEec-CCeEEEEECCCC--cEEehhhccCCCcEEEEEecCC
Confidence 999999999999876654454556677789999999999998 999999999887 55554 5678999999999843
No 56
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=100.00 E-value=2.9e-38 Score=263.45 Aligned_cols=243 Identities=21% Similarity=0.360 Sum_probs=204.2
Q ss_pred eecccCCCCCeeEEEEe---CCEEEEEeCCCeEEEEeecCCCccccccCCccccceeeeeccCCCCceeEecccceeeee
Q 047325 75 FCGFKASSGLVKAIVIS---GEKIFTGHQDGKIRVWKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWI 151 (368)
Q Consensus 75 ~~~~~~~~~~v~~~~~~---~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (368)
...+.+|.+.|.+++|+ +++|++|+.|++|++|++....... ......+.
T Consensus 10 ~~~l~gH~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~---------------------------~~~~~~~~ 62 (319)
T 3frx_A 10 RGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKF---------------------------GVPVRSFK 62 (319)
T ss_dssp EEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTEE---------------------------EEEEEEEE
T ss_pred EEEEccccceEEEEEccCCCccEEEEecCCccEEEecCCCCCccc---------------------------cccceEEe
Confidence 34678999999999997 3799999999999999987543110 01234566
Q ss_pred ecCCCEeEEEEcCCCCEEEEEeCCCcEEEEEccCCeEEEEeecCCCceEEEEeCCCC-eEEEEcCCCeEEEEEcCCCCCC
Q 047325 152 RHSDAVSCMSLDQDCGLLYTASWDRTFKVWRISDSKCLESVSAHDDAVNSVVSSSEG-LIFTGSADGTVKVWKREQHGKG 230 (368)
Q Consensus 152 ~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~ 230 (368)
+|...|.+++|+|++++|++|+.|++|++||+.+++.+..+.+|...|.+++|+|++ ++++|+.|+.|++||++..
T Consensus 63 ~h~~~v~~~~~s~dg~~l~s~s~D~~v~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vwd~~~~--- 139 (319)
T 3frx_A 63 GHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKGQ--- 139 (319)
T ss_dssp CCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSCEEEEEETTSCEEEEETTSC---
T ss_pred CCcccEEEEEECCCCCEEEEEeCCCEEEEEECCCCCeeEEEccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCC---
Confidence 799999999999999999999999999999999999999999999999999999999 9999999999999999743
Q ss_pred cccccceeeccccccEEEEEEcCC------CCEEEEecCCCcEEEEeCCCccccceeeeccceEEEE--EEeCCCEEEEe
Q 047325 231 TKHSLAQTLLKQECAVTALVVSSS------RSIVYCGSSDGLVNFWEREKQLSHGGVLKGHKLAVLC--LAAAGKLVFSG 302 (368)
Q Consensus 231 ~~~~~~~~~~~~~~~i~~~~~~~~------~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~~~ 302 (368)
....+.+|...+.++.+.|. +..|++++.|+.|++||+++.... ..+.+|...+.+ ++|++++|++|
T Consensus 140 ----~~~~~~~h~~~v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~-~~~~~h~~~v~~~~~sp~g~~l~s~ 214 (319)
T 3frx_A 140 ----CLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIE-ADFIGHNSNINTLTASPDGTLIASA 214 (319)
T ss_dssp ----EEEEECCCSSCEEEEEECCC------CCEEEEEETTSCEEEEETTTTEEE-EEECCCCSCEEEEEECTTSSEEEEE
T ss_pred ----eEEEEeccCCcEEEEEEccCCCCCCCccEEEEEeCCCEEEEEECCcchhh-eeecCCCCcEEEEEEcCCCCEEEEE
Confidence 45677889999999999985 448999999999999999876544 456678777754 55689999999
Q ss_pred eCCCeEEEEecCCCceeeeEeeeccccCeeEEEEecCCeeeecCCc-ceEEEEE
Q 047325 303 SADKTICVWRRDGAIHTCLSVLTGHTGPVKCLAVEEDRDSSSSTSS-CAQRWIV 355 (368)
Q Consensus 303 ~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~-~~~~w~l 355 (368)
+.||.|++||+... +.+..+.. ..+|.+++|+|++..++++.. ..++|.+
T Consensus 215 ~~dg~i~iwd~~~~--~~~~~~~~-~~~v~~~~~sp~~~~la~~~~~~i~v~~~ 265 (319)
T 3frx_A 215 GKDGEIMLWNLAAK--KAMYTLSA-QDEVFSLAFSPNRYWLAAATATGIKVFSL 265 (319)
T ss_dssp ETTCEEEEEETTTT--EEEEEEEC-CSCEEEEEECSSSSEEEEEETTEEEEEEE
T ss_pred eCCCeEEEEECCCC--cEEEEecC-CCcEEEEEEcCCCCEEEEEcCCCcEEEEe
Confidence 99999999999876 56666664 468999999999998877653 4566654
No 57
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=100.00 E-value=3.3e-38 Score=273.44 Aligned_cols=270 Identities=17% Similarity=0.279 Sum_probs=219.0
Q ss_pred EEEEEecCC-EEEEccCCCcEEEEcCCcc----eecccCCCCCeeEEEEe--CCEEEEEeCCCeEEEEeecCCCcccccc
Q 047325 47 IYSLAASKD-LLYTGSDSKNIRVWKNLKE----FCGFKASSGLVKAIVIS--GEKIFTGHQDGKIRVWKISPKNQSVHKR 119 (368)
Q Consensus 47 i~~~~~~~~-~l~s~~~dg~i~iw~~~~~----~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~vw~~~~~~~~~~~~ 119 (368)
++.|+|+.+ +||+|. |++|+|||..+. ...+..|...|++++|+ |++|++|+.||.|++||+++++...
T Consensus 108 ~~~l~wS~~n~lAvgl-d~tV~lWd~~tg~~~~~~~~~~~~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~~~~~~--- 183 (420)
T 4gga_A 108 LNLVDWSSGNVLAVAL-DNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLR--- 183 (420)
T ss_dssp CBCEEECTTSEEEEEE-TTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEE---
T ss_pred ceeEEECCCCEEEEEe-CCEEEEEECCCCCEEEEEEecCCCCcEEEEEECCCCCEEEEEECCCeEEEEEcCCCcEEE---
Confidence 566888755 777665 999999998753 23456788899999998 8899999999999999998876432
Q ss_pred CCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcCCCCEEEEEeCCCcEEEEEccC-CeEEEEeecCCCc
Q 047325 120 AGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCGLLYTASWDRTFKVWRISD-SKCLESVSAHDDA 198 (368)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~-~~~~~~~~~~~~~ 198 (368)
.+.+|...+.++.++ +..|++|+.|+.+++||... ...+..+.+|...
T Consensus 184 -----------------------------~~~~h~~~v~~~s~~--~~~l~sgs~d~~i~~~d~~~~~~~~~~~~~h~~~ 232 (420)
T 4gga_A 184 -----------------------------NMTSHSARVGSLSWN--SYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQE 232 (420)
T ss_dssp -----------------------------EECCCSSCEEEEEEE--TTEEEEEETTSEEEEEETTSSSCEEEEEECCSSC
T ss_pred -----------------------------EEeCCCCceEEEeeC--CCEEEEEeCCCceeEeeecccceeeEEecccccc
Confidence 233488999998885 56999999999999999876 4566788999999
Q ss_pred eEEEEeCCCC-eEEEEcCCCeEEEEEcCCCCCCcccccceeeccccccEEEEEEcCCCC-EEEE--ecCCCcEEEEeCCC
Q 047325 199 VNSVVSSSEG-LIFTGSADGTVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSSSRS-IVYC--GSSDGLVNFWEREK 274 (368)
Q Consensus 199 v~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~--~~~dg~i~i~d~~~ 274 (368)
+..+.+.|++ .+++++.|+.+++|+...... ..........|...|.+++|+|.+. ++++ |+.|+.|++||+++
T Consensus 233 ~~~~~~~~~g~~l~s~~~D~~v~i~~~~~~~~--~~~~~~~~~~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t 310 (420)
T 4gga_A 233 VCGLRWAPDGRHLASGGNDNLVNVWPSAPGEG--GWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCS 310 (420)
T ss_dssp EEEEEECTTSSEEEEEETTSCEEEEESSCCSS--CSCCSEEECCCSSCEEEEEECTTCTTEEEEEECTTTCEEEEEETTT
T ss_pred eeeeeecCCCCeeeeeeccccceEEeeccccc--cceeeeeecccCCceeeeeeCCCcccEEEEEeecCCCEEEEEeCCc
Confidence 9999999999 999999999999999986532 1223456677889999999999655 5544 56899999999998
Q ss_pred ccccceeeeccceEEEEEEeCCCEEEEee--CCCeEEEEecCCCceeeeEeeeccccCeeEEEEecCCeeeecCCcceEE
Q 047325 275 QLSHGGVLKGHKLAVLCLAAAGKLVFSGS--ADKTICVWRRDGAIHTCLSVLTGHTGPVKCLAVEEDRDSSSSTSSCAQR 352 (368)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~ 352 (368)
+................++++++.+++++ .||.|+|||+.+. +++..+.+|.++|++++|+|+|.
T Consensus 311 ~~~~~~~~~~~~v~~~~~~~~~~~lv~~sg~~d~~I~iwd~~~~--~~v~~l~gH~~~V~~l~~spdg~----------- 377 (420)
T 4gga_A 311 GACLSAVDAHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTM--AKVAELKGHTSRVLSLTMSPDGA----------- 377 (420)
T ss_dssp TEEEEEEECSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTC--CEEEEECCCSSCEEEEEECTTSS-----------
T ss_pred cccceeeccccceeeeeecCCCCeEEEEEecCCCEEEEEECCCC--cEEEEEcCCCCCEEEEEEcCCCC-----------
Confidence 87765444444444466778888887764 7999999999876 78889999999999999999999
Q ss_pred EEEeeCCcccccccC
Q 047325 353 WIVYSGSLDKSDDDV 367 (368)
Q Consensus 353 w~l~sg~~D~~v~i~ 367 (368)
.|+||+.|++||+|
T Consensus 378 -~l~S~s~D~tvriW 391 (420)
T 4gga_A 378 -TVASAAADETLRLW 391 (420)
T ss_dssp -CEEEEETTTEEEEE
T ss_pred -EEEEEecCCeEEEE
Confidence 67788888888877
No 58
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=100.00 E-value=7.5e-38 Score=269.81 Aligned_cols=280 Identities=18% Similarity=0.217 Sum_probs=224.7
Q ss_pred EEEEEecCC---EEEEccCCCcEEEEcCCc------ceecccCCCCCeeEEEEe---CCEEEEEeCCCeEEEEeecCCCc
Q 047325 47 IYSLAASKD---LLYTGSDSKNIRVWKNLK------EFCGFKASSGLVKAIVIS---GEKIFTGHQDGKIRVWKISPKNQ 114 (368)
Q Consensus 47 i~~~~~~~~---~l~s~~~dg~i~iw~~~~------~~~~~~~~~~~v~~~~~~---~~~l~s~~~dg~i~vw~~~~~~~ 114 (368)
...++++++ ++++++.||.|+||++.+ ....+.+|.+.|.+++|+ +++|++|+.||.|++||+.++..
T Consensus 37 ~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~~ 116 (402)
T 2aq5_A 37 SGFCAVNPKFMALICEASGGGAFLVLPLGKTGRVDKNVPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGL 116 (402)
T ss_dssp SCSEEECSSEEEEEBCCSSSCCEEEEETTCCEECCTTCCCBCCCSSCEEEEEECTTCTTEEEEEETTSEEEEEECCTTCC
T ss_pred CCcEEECCCeEEEEEEEcCCCEEEEEECccCCCCCCCCceEecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCCC
Confidence 445778877 444689999999999854 244577899999999996 67999999999999999987743
Q ss_pred cccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcCCC-CEEEEEeCCCcEEEEEccCCeEEEEe-
Q 047325 115 SVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDC-GLLYTASWDRTFKVWRISDSKCLESV- 192 (368)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~iwd~~~~~~~~~~- 192 (368)
..... .....+.+|...|.+++|+|++ ++|++++.|+.|++||+++++.+..+
T Consensus 117 ~~~~~-------------------------~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~ 171 (402)
T 2aq5_A 117 VLPLR-------------------------EPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLG 171 (402)
T ss_dssp SSCBC-------------------------SCSEEEECCSSCEEEEEECSSBTTEEEEEETTSCEEEEETTTTEEEEEEC
T ss_pred ccccC-------------------------CceEEecCCCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCCCccEEEe
Confidence 22110 1233456699999999999998 69999999999999999999999999
Q ss_pred -ecCCCceEEEEeCCCC-eEEEEcCCCeEEEEEcCCCCCCcccccceee-cccccc-EEEEEEcCCCCEEEEe---cCCC
Q 047325 193 -SAHDDAVNSVVSSSEG-LIFTGSADGTVKVWKREQHGKGTKHSLAQTL-LKQECA-VTALVVSSSRSIVYCG---SSDG 265 (368)
Q Consensus 193 -~~~~~~v~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~-~~~~~~-i~~~~~~~~~~~l~~~---~~dg 265 (368)
..|...|.+++|+|++ .|++++.|+.|++||++.. .....+ ..|... +.++.|+|++++|++| +.|+
T Consensus 172 ~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~d~ 245 (402)
T 2aq5_A 172 PDVHPDTIYSVDWSRDGALICTSCRDKRVRVIEPRKG------TVVAEKDRPHEGTRPVHAVFVSEGKILTTGFSRMSER 245 (402)
T ss_dssp TTTCCSCEEEEEECTTSSCEEEEETTSEEEEEETTTT------EEEEEEECSSCSSSCCEEEECSTTEEEEEEECTTCCE
T ss_pred cCCCCCceEEEEECCCCCEEEEEecCCcEEEEeCCCC------ceeeeeccCCCCCcceEEEEcCCCcEEEEeccCCCCc
Confidence 7899999999999999 9999999999999999865 234444 566655 8999999999999999 8999
Q ss_pred cEEEEeCCCccccceeee-ccce--EEEEEEeCCCEEE-EeeCCCeEEEEecCCCc--eeeeEeeeccccCeeEEEEecC
Q 047325 266 LVNFWEREKQLSHGGVLK-GHKL--AVLCLAAAGKLVF-SGSADKTICVWRRDGAI--HTCLSVLTGHTGPVKCLAVEED 339 (368)
Q Consensus 266 ~i~i~d~~~~~~~~~~~~-~~~~--~~~~~~~~~~~l~-~~~~dg~i~iw~~~~~~--~~~~~~~~~h~~~v~~l~~~~~ 339 (368)
.|++||+++......... .|.. ...++++++++|+ +|+.||.|++||+.... ...+..+. |..+|++++|+|+
T Consensus 246 ~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~g~~dg~i~i~d~~~~~~~~~~l~~~~-~~~~v~~~~~sp~ 324 (402)
T 2aq5_A 246 QVALWDTKHLEEPLSLQELDTSSGVLLPFFDPDTNIVYLCGKGDSSIRYFEITSEAPFLHYLSMFS-SKESQRGMGYMPK 324 (402)
T ss_dssp EEEEEETTBCSSCSEEEECCCCSSCEEEEEETTTTEEEEEETTCSCEEEEEECSSTTCEEEEEEEC-CSSCCSEEEECCG
T ss_pred eEEEEcCccccCCceEEeccCCCceeEEEEcCCCCEEEEEEcCCCeEEEEEecCCCcceEeecccc-cCCcccceEEecc
Confidence 999999997655333322 3333 3466778899886 55679999999998764 22333333 6689999999999
Q ss_pred CeeeecCCcceEEEEEeeC
Q 047325 340 RDSSSSTSSCAQRWIVYSG 358 (368)
Q Consensus 340 ~~~~~~~~~~~~~w~l~sg 358 (368)
+.+++++++..++|.+.++
T Consensus 325 ~~~~~s~~~~~~~~~l~~~ 343 (402)
T 2aq5_A 325 RGLEVNKCEIARFYKLHER 343 (402)
T ss_dssp GGSCGGGTEEEEEEEEETT
T ss_pred cccceecceeEEEEEcCCC
Confidence 9999999999999998764
No 59
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5.2e-40 Score=289.11 Aligned_cols=279 Identities=13% Similarity=0.124 Sum_probs=206.1
Q ss_pred eeccCcCCcEEEEEecC--------CEEEEccCCCcEEEEcCCcce-------------ecccCCCCCeeEEEEe-CCEE
Q 047325 38 GSLVREEGHIYSLAASK--------DLLYTGSDSKNIRVWKNLKEF-------------CGFKASSGLVKAIVIS-GEKI 95 (368)
Q Consensus 38 ~~~~~h~~~i~~~~~~~--------~~l~s~~~dg~i~iw~~~~~~-------------~~~~~~~~~v~~~~~~-~~~l 95 (368)
.++.+|.+.|.+++|++ .+||+|+.||+|++||+.... ..+.+|...|.+++|+ +..|
T Consensus 201 ~~l~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~p~~~l~~h~~~v~sv~~s~~~~l 280 (524)
T 2j04_B 201 QTIVHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKMCEKPSLTLSLADSLITTFDFLSPTTV 280 (524)
T ss_dssp EEEEECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEECCCSCSEEECCTTTCEEEEEESSSSEE
T ss_pred EEEEecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccceeecCceEEEEcCCCCEEEEEecCCCeE
Confidence 44677889999999986 399999999999999986431 2567899999999997 6799
Q ss_pred EEEeCCCeEEEEeecCCCccccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEE--EEcCCC-CEEEEE
Q 047325 96 FTGHQDGKIRVWKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCM--SLDQDC-GLLYTA 172 (368)
Q Consensus 96 ~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~--~~~~~~-~~l~~~ 172 (368)
++|+.||+|++||++++... ...+.+|...|+++ .|+|++ .+|++|
T Consensus 281 asgs~DgtV~lWD~~~~~~~-------------------------------~~~~~~H~~~V~sv~~~~s~~g~~~laS~ 329 (524)
T 2j04_B 281 VCGFKNGFVAEFDLTDPEVP-------------------------------SFYDQVHDSYILSVSTAYSDFEDTVVSTV 329 (524)
T ss_dssp EEEETTSEEEEEETTBCSSC-------------------------------SEEEECSSSCEEEEEEECCTTSCCEEEEE
T ss_pred EEEeCCCEEEEEECCCCCCc-------------------------------eEEeecccccEEEEEEEcCCCCCeEEEEe
Confidence 99999999999999865321 11234599999999 567887 899999
Q ss_pred eCCCcEEEEEccCCeEEEEeecCCC--ceEEEEeCCCC-eEEEEcCCCeEEEEEcCCCCCCcccccceeeccccccEEEE
Q 047325 173 SWDRTFKVWRISDSKCLESVSAHDD--AVNSVVSSSEG-LIFTGSADGTVKVWKREQHGKGTKHSLAQTLLKQECAVTAL 249 (368)
Q Consensus 173 ~~d~~i~iwd~~~~~~~~~~~~~~~--~v~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~i~~~ 249 (368)
+.|++|+|||+++++++..+.+|.. .|.+++|+|++ .+++++.|++|++||++... ....+.+|...|.++
T Consensus 330 S~D~tvklWD~~~~~~~~~~~~~~~~~~v~~v~fsp~~~~l~s~~~d~tv~lwd~~~~~------~~~~l~gH~~~V~sv 403 (524)
T 2j04_B 330 AVDGYFYIFNPKDIATTKTTVSRFRGSNLVPVVYCPQIYSYIYSDGASSLRAVPSRAAF------AVHPLVSRETTITAI 403 (524)
T ss_dssp ETTSEEEEECGGGHHHHCEEEEECSCCSCCCEEEETTTTEEEEECSSSEEEEEETTCTT------CCEEEEECSSCEEEE
T ss_pred ccCCeEEEEECCCCCcccccccccccCcccceEeCCCcCeEEEeCCCCcEEEEECcccc------cceeeecCCCceEEE
Confidence 9999999999999887777776653 58899999988 89999999999999998752 345677899999999
Q ss_pred EEcCCCCEEEEecCCCcEEEEeCCCccccceeee----ccceEE--EEEEeCCCEEEEeeCCCeEEEEecCCCceeeeEe
Q 047325 250 VVSSSRSIVYCGSSDGLVNFWEREKQLSHGGVLK----GHKLAV--LCLAAAGKLVFSGSADKTICVWRRDGAIHTCLSV 323 (368)
Q Consensus 250 ~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~----~~~~~~--~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~ 323 (368)
+|+|++++|++|+.||+|++||+...... .... .+...+ .+++|+++.+.. .. .+.+|+... ++..+..
T Consensus 404 a~Sp~g~~l~Sgs~Dgtv~lwd~~~~~~~-~~~~~~~~~~~~~v~~v~~sp~g~~~~~-~~--~~~~~~~~~-~g~~~~~ 478 (524)
T 2j04_B 404 GVSRLHPMVLAGSADGSLIITNAARRLLH-GIKNSSATQKSLRLWKWDYSIKDDKYRI-DS--SYEVYPLTV-NDVSKAK 478 (524)
T ss_dssp ECCSSCCBCEEEETTTEEECCBSCSSTTT-CC------CCCCEEEECBCCSSSCEEEE-CC--CCCCCC-----------
T ss_pred EeCCCCCeEEEEECCCEEEEEechHhhcc-ccccCccceeeeEEEEeccCCCCCeEEc-cC--Cceeccccc-CCcceee
Confidence 99999999999999999999998754221 1110 111133 445667774422 22 233333221 1356778
Q ss_pred eeccccCeeEEEEecCCeeeecCCcceEEEEEeeCCcccccccC
Q 047325 324 LTGHTGPVKCLAVEEDRDSSSSTSSCAQRWIVYSGSLDKSDDDV 367 (368)
Q Consensus 324 ~~~h~~~v~~l~~~~~~~~~~~~~~~~~~w~l~sg~~D~~v~i~ 367 (368)
+.+|..+|.+++|+|++..-. .+++|+.||.||||
T Consensus 479 l~gh~~~V~~Vafsp~~~~~~---------~lAsg~~~g~vrlw 513 (524)
T 2j04_B 479 IDAHGINITCTKWNETSAGGK---------CYAFSNSAGLLTLE 513 (524)
T ss_dssp ---CCCSCCCEEECCSTTTTT---------EEEEECTTSEEEEE
T ss_pred ecCCCceEEEEECCCCCCccH---------HHHhhccCceEEEE
Confidence 889999999999999953000 47788888888887
No 60
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=100.00 E-value=7.7e-39 Score=270.88 Aligned_cols=241 Identities=19% Similarity=0.210 Sum_probs=196.9
Q ss_pred eeeeccCcCCcEEEEEecCC-EEEEccCCCcEEEEcCCcce------ecccCCCCCeeEEEEe--CCEEEEEeCCCeEEE
Q 047325 36 LIGSLVREEGHIYSLAASKD-LLYTGSDSKNIRVWKNLKEF------CGFKASSGLVKAIVIS--GEKIFTGHQDGKIRV 106 (368)
Q Consensus 36 ~~~~~~~h~~~i~~~~~~~~-~l~s~~~dg~i~iw~~~~~~------~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~v 106 (368)
+.....+|.+.|.+++|+++ .+++++.||+|+|||+.+.. ....+|...|.+++|+ +++|++|+.||.|++
T Consensus 86 ~~~~~~~~~~~V~~~~~s~d~~~l~~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~sgs~dg~v~i 165 (357)
T 4g56_B 86 LCTAGVQTEAGVTDVAWVSEKGILVASDSGAVELWEILEKESLLVNKFAKYEHDDIVKTLSVFSDGTQAVSGGKDFSVKV 165 (357)
T ss_dssp GCSEEEECSSCEEEEEEETTTEEEEEETTSCEEEC--------CCCCEEECCCSSCEEEEEECSSSSEEEEEETTSCEEE
T ss_pred EecccCCCCCCEEEEEEcCCCCEEEEECCCEEEEeeccccceeEEEeeccCCCCCCEEEEEECCCCCEEEEEeCCCeEEE
Confidence 34445679999999999877 77888999999999986432 2345799999999998 789999999999999
Q ss_pred EeecCCCccccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcCCCC-EEEEEeCCCcEEEEEccC
Q 047325 107 WKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCG-LLYTASWDRTFKVWRISD 185 (368)
Q Consensus 107 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~i~iwd~~~ 185 (368)
||+++++... .+.+|...|++++|++++. ++++++.|+.|++||+++
T Consensus 166 wd~~~~~~~~--------------------------------~~~~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~ 213 (357)
T 4g56_B 166 WDLSQKAVLK--------------------------------SYNAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRK 213 (357)
T ss_dssp EETTTTEEEE--------------------------------EECCCSSCEEEEEECTTCSSCEEEEETTSCEEECCTTS
T ss_pred EECCCCcEEE--------------------------------EEcCCCCCEEEEEEccCCCceeeeeccCCceEEEECCC
Confidence 9998765322 2334999999999999875 789999999999999999
Q ss_pred CeEEEEee--cCCCceEEEEeCCCC--eEEEEcCCCeEEEEEcCCCCCCcccccceeeccccccEEEEEEcCCC-CEEEE
Q 047325 186 SKCLESVS--AHDDAVNSVVSSSEG--LIFTGSADGTVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSSSR-SIVYC 260 (368)
Q Consensus 186 ~~~~~~~~--~~~~~v~~~~~~~~~--~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~l~~ 260 (368)
+++...+. .+...+.+++|+|++ +|++|+.|+.|++||++.. .....+..|...|++++|+|++ ++|++
T Consensus 214 ~~~~~~~~~~~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~------~~~~~~~~~~~~v~~l~~sp~~~~~las 287 (357)
T 4g56_B 214 PKPATRIDFCASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKNP------DSAQTSAVHSQNITGLAYSYHSSPFLAS 287 (357)
T ss_dssp SSCBCBCCCTTCCSCEEEEEECTTSTTEEEEEESSSCEEEEESSCG------GGCEEECCCSSCEEEEEECSSSSCCEEE
T ss_pred CceeeeeeeccccccccchhhhhcccceEEEeecccceeEEECCCC------cEeEEEeccceeEEEEEEcCCCCCEEEE
Confidence 88776554 466789999999986 7889999999999999865 3566778899999999999987 58999
Q ss_pred ecCCCcEEEEeCCCccccceeeeccceEEEEEE--e-CCCEEEEeeCCCeEEEEecCCC
Q 047325 261 GSSDGLVNFWEREKQLSHGGVLKGHKLAVLCLA--A-AGKLVFSGSADKTICVWRRDGA 316 (368)
Q Consensus 261 ~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~--~-~~~~l~~~~~dg~i~iw~~~~~ 316 (368)
|+.|+.|++||+++++.. ...+|...|.+++ | ++.+|++|+.||+|++|++...
T Consensus 288 gs~D~~i~iwd~~~~~~~--~~~~H~~~V~~vafsP~d~~~l~s~s~Dg~v~iW~~~~~ 344 (357)
T 4g56_B 288 ISEDCTVAVLDADFSEVF--RDLSHRDFVTGVAWSPLDHSKFTTVGWDHKVLHHHLPSE 344 (357)
T ss_dssp EETTSCEEEECTTSCEEE--EECCCSSCEEEEEECSSSTTEEEEEETTSCEEEEECC--
T ss_pred EeCCCEEEEEECCCCcEe--EECCCCCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCC
Confidence 999999999999987655 3347888886655 5 6889999999999999998654
No 61
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=100.00 E-value=2.4e-38 Score=274.62 Aligned_cols=258 Identities=12% Similarity=0.150 Sum_probs=201.1
Q ss_pred EEEEEec--CCEEEEccCCCcEEEEcCCcceecccCCCCCeeEE-EEe--CCEEEEEeCCCeEEEEeecCCCccccccCC
Q 047325 47 IYSLAAS--KDLLYTGSDSKNIRVWKNLKEFCGFKASSGLVKAI-VIS--GEKIFTGHQDGKIRVWKISPKNQSVHKRAG 121 (368)
Q Consensus 47 i~~~~~~--~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~v~~~-~~~--~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~ 121 (368)
+++++|+ +++|++|+.||.|++||..........+...+.++ .++ +++|++|+.||.|++||+.+++....
T Consensus 59 ~~~~~~s~~g~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~---- 134 (420)
T 3vl1_A 59 GKGNTFEKVGSHLYKARLDGHDFLFNTIIRDGSKMLKRADYTAVDTAKLQMRRFILGTTEGDIKVLDSNFNLQREI---- 134 (420)
T ss_dssp CTTCEEEEEETTEEEEEETTEEEEEECCSEETTTTSCSCCEEEEEEECSSSCEEEEEETTSCEEEECTTSCEEEEE----
T ss_pred ccceeeeecCCeEEEEEcCCcEEEEEecccceeeEEecCCceEEEEEecCCCEEEEEECCCCEEEEeCCCcceeee----
Confidence 3356665 55999999999999999886544333222345444 344 88999999999999999886653222
Q ss_pred ccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcCCCCEEEEEeCCCcEEEEEccCCeEEEEeecCCCceEE
Q 047325 122 TLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCGLLYTASWDRTFKVWRISDSKCLESVSAHDDAVNS 201 (368)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~ 201 (368)
+.+|...|++++|+|++++|++++.|+.|++||+.+++.+..+.+|...|.+
T Consensus 135 ----------------------------~~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~ 186 (420)
T 3vl1_A 135 ----------------------------DQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTD 186 (420)
T ss_dssp ----------------------------TTSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCCCEEEECCSSCEEE
T ss_pred ----------------------------cccccCccEEEEECCCCCEEEEEeCCCeEEEEeCCCCcCceEEcCCCCcEEE
Confidence 1239999999999999999999999999999999999999999999999999
Q ss_pred EEeCCCC-eEEEEcCCCeEEEEEcCCCCCCcccccceeec---ccccc---------------------EEEEEEcCCCC
Q 047325 202 VVSSSEG-LIFTGSADGTVKVWKREQHGKGTKHSLAQTLL---KQECA---------------------VTALVVSSSRS 256 (368)
Q Consensus 202 ~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~---~~~~~---------------------i~~~~~~~~~~ 256 (368)
++|+|++ .|++++.|+.|++||++... ....+. .+... +.+++|+|+++
T Consensus 187 ~~~~~~~~~l~s~~~d~~v~iwd~~~~~------~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~ 260 (420)
T 3vl1_A 187 IAIIDRGRNVLSASLDGTIRLWECGTGT------TIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGK 260 (420)
T ss_dssp EEEETTTTEEEEEETTSCEEEEETTTTE------EEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTE
T ss_pred EEEcCCCCEEEEEcCCCcEEEeECCCCc------eeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCCC
Confidence 9999999 99999999999999998652 222332 23334 44455678999
Q ss_pred EEEEecCCCcEEEEeCCCccccceeeeccceEEEEE--EeCCC-EEEEeeCCCeEEEEecCCCceeeeEeeec-cccCee
Q 047325 257 IVYCGSSDGLVNFWEREKQLSHGGVLKGHKLAVLCL--AAAGK-LVFSGSADKTICVWRRDGAIHTCLSVLTG-HTGPVK 332 (368)
Q Consensus 257 ~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~--~~~~~-~l~~~~~dg~i~iw~~~~~~~~~~~~~~~-h~~~v~ 332 (368)
+|++++.||.|++||++++.........|...+.++ +|+++ +|++|+.||.|++||+.+.. .++..+.. |..+|+
T Consensus 261 ~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~-~~~~~~~~~~~~~v~ 339 (420)
T 3vl1_A 261 YVIAGHVSGVITVHNVFSKEQTIQLPSKFTCSCNSLTVDGNNANYIYAGYENGMLAQWDLRSPE-CPVGEFLINEGTPIN 339 (420)
T ss_dssp EEEEEETTSCEEEEETTTCCEEEEECCTTSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTT-SCSEEEEESTTSCEE
T ss_pred EEEEEcCCCeEEEEECCCCceeEEcccccCCCceeEEEeCCCCCEEEEEeCCCeEEEEEcCCCc-CchhhhhccCCCCce
Confidence 999999999999999998877666666677666555 45677 99999999999999998763 33555655 677888
Q ss_pred EEEEecCCeeee
Q 047325 333 CLAVEEDRDSSS 344 (368)
Q Consensus 333 ~l~~~~~~~~~~ 344 (368)
++.+ +++.+++
T Consensus 340 ~~~~-~~~~~l~ 350 (420)
T 3vl1_A 340 NVYF-AAGALFV 350 (420)
T ss_dssp EEEE-ETTEEEE
T ss_pred EEEe-CCCCEEE
Confidence 8855 5677433
No 62
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=100.00 E-value=2.8e-38 Score=276.46 Aligned_cols=302 Identities=13% Similarity=0.217 Sum_probs=215.3
Q ss_pred CcCCcEEEEEecCC--EEEEccCCCcEEEEcCCcc-------------eecccCCC------------CCeeEEEEe--C
Q 047325 42 REEGHIYSLAASKD--LLYTGSDSKNIRVWKNLKE-------------FCGFKASS------------GLVKAIVIS--G 92 (368)
Q Consensus 42 ~h~~~i~~~~~~~~--~l~s~~~dg~i~iw~~~~~-------------~~~~~~~~------------~~v~~~~~~--~ 92 (368)
.|.+.|++++|+++ +||+|+.||.|++||+... ...+.+|. ..|.+++|+ +
T Consensus 26 ~~~~~V~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~~ 105 (447)
T 3dw8_B 26 AEADIISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQK 105 (447)
T ss_dssp CGGGSEEEEEECSSSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECCCC
T ss_pred cccCcEEEEEECCCCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEEcCCC
Confidence 46789999999865 9999999999999997632 45678898 889999998 3
Q ss_pred --CEEEEEeCCCeEEEEeecCCCccccccCCcccc--------ceeeeeccCCCCceeEecccceee-eeecCCCEeEEE
Q 047325 93 --EKIFTGHQDGKIRVWKISPKNQSVHKRAGTLPT--------LKDIFKSSIKPSNYIEVRRHRTAL-WIRHSDAVSCMS 161 (368)
Q Consensus 93 --~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~v~~~~ 161 (368)
.+|++++.||.|++||+.++............. ..........+... ......... ..+|...|.+++
T Consensus 106 ~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~h~~~v~~~~ 184 (447)
T 3dw8_B 106 NAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDL-MVEASPRRIFANAHTYHINSIS 184 (447)
T ss_dssp SSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEE-EEEEEEEEEECSCCSSCCCEEE
T ss_pred CcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchhe-eeeccceEEeccCCCcceEEEE
Confidence 689999999999999998654321100000000 00000000000000 011111122 357999999999
Q ss_pred EcCCCCEEEEEeCCCcEEEEEccC-CeEEE-------EeecCCCceEEEEeCCCC--eEEEEcCCCeEEEEEcCCCCCCc
Q 047325 162 LDQDCGLLYTASWDRTFKVWRISD-SKCLE-------SVSAHDDAVNSVVSSSEG--LIFTGSADGTVKVWKREQHGKGT 231 (368)
Q Consensus 162 ~~~~~~~l~~~~~d~~i~iwd~~~-~~~~~-------~~~~~~~~v~~~~~~~~~--~l~~~~~dg~i~i~d~~~~~~~~ 231 (368)
|+|++++|++| .|+.|++||+++ ++.+. .+.+|...|.+++|+|++ .|++|+.||.|++||++......
T Consensus 185 ~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~ 263 (447)
T 3dw8_B 185 INSDYETYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDMRASALCD 263 (447)
T ss_dssp ECTTSSEEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSCEEEEETTTCSSSC
T ss_pred EcCCCCEEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCCeEEEEECcCCcccc
Confidence 99999999998 799999999984 44444 256799999999999986 89999999999999998763210
Q ss_pred ccccceeeccccc------------cEEEEEEcCCCCEEEEecCCCcEEEEeCCCccccceeeeccceE-----------
Q 047325 232 KHSLAQTLLKQEC------------AVTALVVSSSRSIVYCGSSDGLVNFWEREKQLSHGGVLKGHKLA----------- 288 (368)
Q Consensus 232 ~~~~~~~~~~~~~------------~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~----------- 288 (368)
.....+..+.. .|.+++|+|++++|++++. +.|++||++........+..|...
T Consensus 264 --~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 340 (447)
T 3dw8_B 264 --RHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY-LSVKVWDLNMENRPVETYQVHEYLRSKLCSLYEND 340 (447)
T ss_dssp --TTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEES-SEEEEEETTCCSSCSCCEESCGGGTTTHHHHHHTS
T ss_pred --ceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeC-CeEEEEeCCCCccccceeecccccccccccccccc
Confidence 11345555554 8999999999999999999 999999998733444566666421
Q ss_pred ------EEEEEeCCCEEEEeeCCCeEEEEecCCCceeeeEe------------------------------eeccccCee
Q 047325 289 ------VLCLAAAGKLVFSGSADKTICVWRRDGAIHTCLSV------------------------------LTGHTGPVK 332 (368)
Q Consensus 289 ------~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~------------------------------~~~h~~~v~ 332 (368)
.++++|++++|++|+.||.|++||+.++....+.. ...+...|.
T Consensus 341 ~i~~~~~~~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 420 (447)
T 3dw8_B 341 CIFDKFECCWNGSDSVVMTGSYNNFFRMFDRNTKRDITLEASRENNKPRTVLKPRKVCASGKRKKDEISVDSLDFNKKIL 420 (447)
T ss_dssp GGGCCCCEEECTTSSEEEEECSTTEEEEEETTTCCEEEEECCSTTCCTTCBCCCCCEECSSCCCTTCEEGGGCCTTSCCC
T ss_pred ccccceEEEECCCCCEEEEeccCCEEEEEEcCCCcceeeeecccccccccccCCccccccCCcccccccccccccCCcee
Confidence 26888999999999999999999998763221110 012345789
Q ss_pred EEEEecCCeeeecCCc
Q 047325 333 CLAVEEDRDSSSSTSS 348 (368)
Q Consensus 333 ~l~~~~~~~~~~~~~~ 348 (368)
.++|+|++.++|+++.
T Consensus 421 ~~~~~p~~~~la~~~~ 436 (447)
T 3dw8_B 421 HTAWHPKENIIAVATT 436 (447)
T ss_dssp EEEECSSSSEEEEECS
T ss_pred EEEECCCCCEEEEEec
Confidence 9999999996665543
No 63
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=100.00 E-value=5.5e-38 Score=265.45 Aligned_cols=243 Identities=19% Similarity=0.296 Sum_probs=205.5
Q ss_pred cCCCceeeeccCcCCcEEEEEecCC--EEEEccCCCcEEEEcCCc--------ceecccCCCCCeeEEEEe--CCEEEEE
Q 047325 31 LPQNGLIGSLVREEGHIYSLAASKD--LLYTGSDSKNIRVWKNLK--------EFCGFKASSGLVKAIVIS--GEKIFTG 98 (368)
Q Consensus 31 ~~~~~~~~~~~~h~~~i~~~~~~~~--~l~s~~~dg~i~iw~~~~--------~~~~~~~~~~~v~~~~~~--~~~l~s~ 98 (368)
.........+..|...|.+++|+++ +|++|+.|+.+++|++.. ....+..|...|.++.|+ +..|+++
T Consensus 93 ~~~~~~~~~~~~~~~~v~~~~~sp~g~~lasg~~d~~i~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~ 172 (354)
T 2pbi_B 93 SFTTNKEHAVTMPCTWVMACAYAPSGCAIACGGLDNKCSVYPLTFDKNENMAAKKKSVAMHTNYLSACSFTNSDMQILTA 172 (354)
T ss_dssp TTTCCEEEEEECSSSCCCEEEECTTSSEEEEESTTSEEEEEECCCCTTCCSGGGCEEEEECSSCEEEEEECSSSSEEEEE
T ss_pred CCCCCcceEEecCCCCEEEEEECCCCCEEEEeeCCCCEEEEEEeccccccccccceeeeccCCcEEEEEEeCCCCEEEEE
Confidence 3455666778889999999999865 999999999999998742 234567899999999998 6799999
Q ss_pred eCCCeEEEEeecCCCccccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcC--CCCEEEEEeCCC
Q 047325 99 HQDGKIRVWKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQ--DCGLLYTASWDR 176 (368)
Q Consensus 99 ~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~d~ 176 (368)
+.||+|++||+++++.. ..+.+|...|.+++++| ++++|++|+.||
T Consensus 173 s~D~~v~lwd~~~~~~~--------------------------------~~~~~h~~~v~~~~~~~~~~g~~l~sgs~Dg 220 (354)
T 2pbi_B 173 SGDGTCALWDVESGQLL--------------------------------QSFHGHGADVLCLDLAPSETGNTFVSGGCDK 220 (354)
T ss_dssp ETTSEEEEEETTTCCEE--------------------------------EEEECCSSCEEEEEECCCSSCCEEEEEETTS
T ss_pred eCCCcEEEEeCCCCeEE--------------------------------EEEcCCCCCeEEEEEEeCCCCCEEEEEeCCC
Confidence 99999999999877532 23445999999999988 468999999999
Q ss_pred cEEEEEccCCeEEEEeecCCCceEEEEeCCCC-eEEEEcCCCeEEEEEcCCCCCCcccccceee--ccccccEEEEEEcC
Q 047325 177 TFKVWRISDSKCLESVSAHDDAVNSVVSSSEG-LIFTGSADGTVKVWKREQHGKGTKHSLAQTL--LKQECAVTALVVSS 253 (368)
Q Consensus 177 ~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~--~~~~~~i~~~~~~~ 253 (368)
.|++||+++++++..+..|...|.+++|+|++ .|++++.|+.|++||++... ....+ ..+...+.+++|+|
T Consensus 221 ~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~v~lwd~~~~~------~~~~~~~~~~~~~~~~~~~s~ 294 (354)
T 2pbi_B 221 KAMVWDMRSGQCVQAFETHESDVNSVRYYPSGDAFASGSDDATCRLYDLRADR------EVAIYSKESIIFGASSVDFSL 294 (354)
T ss_dssp CEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTE------EEEEECCTTCCSCEEEEEECT
T ss_pred eEEEEECCCCcEEEEecCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEECCCCc------EEEEEcCCCcccceeEEEEeC
Confidence 99999999999999999999999999999999 99999999999999998652 12222 22345789999999
Q ss_pred CCCEEEEecCCCcEEEEeCCCccccceeeeccceEEEE--EEeCCCEEEEeeCCCeEEEEe
Q 047325 254 SRSIVYCGSSDGLVNFWEREKQLSHGGVLKGHKLAVLC--LAAAGKLVFSGSADKTICVWR 312 (368)
Q Consensus 254 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~~~~~dg~i~iw~ 312 (368)
++++|++|+.|+.|++||+.++... ..+.+|...+.+ ++|++++|++|+.||+|++|+
T Consensus 295 ~g~~l~~g~~d~~i~vwd~~~~~~~-~~l~~h~~~v~~l~~spdg~~l~sgs~D~~v~vW~ 354 (354)
T 2pbi_B 295 SGRLLFAGYNDYTINVWDVLKGSRV-SILFGHENRVSTLRVSPDGTAFCSGSWDHTLRVWA 354 (354)
T ss_dssp TSSEEEEEETTSCEEEEETTTCSEE-EEECCCSSCEEEEEECTTSSCEEEEETTSEEEEEC
T ss_pred CCCEEEEEECCCcEEEEECCCCceE-EEEECCCCcEEEEEECCCCCEEEEEcCCCCEEecC
Confidence 9999999999999999999877654 566788887754 556899999999999999995
No 64
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=100.00 E-value=4.2e-38 Score=264.87 Aligned_cols=276 Identities=15% Similarity=0.185 Sum_probs=221.2
Q ss_pred cCCcEEEEEecCC--EEEEccCCCcEEEEcCCcc--eecccCCCCCeeEEEEe--CCEEEEEeCCCeEEEEeecCCCccc
Q 047325 43 EEGHIYSLAASKD--LLYTGSDSKNIRVWKNLKE--FCGFKASSGLVKAIVIS--GEKIFTGHQDGKIRVWKISPKNQSV 116 (368)
Q Consensus 43 h~~~i~~~~~~~~--~l~s~~~dg~i~iw~~~~~--~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~vw~~~~~~~~~ 116 (368)
|.++|.+++++++ +++++..++.+..|+.... ......|...|.+++|+ +++|++++ ||.|++||+.++....
T Consensus 8 ~~~~v~~~~~s~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~-dg~i~iw~~~~~~~~~ 86 (337)
T 1gxr_A 8 GSKPAYSFHVTADGQMQPVPFPPDALIGPGIPRHARQINTLNHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKS 86 (337)
T ss_dssp EEEECCEEEECSSSCEEECCCCTTSSSSTTCCSEEEEEEEECCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCCS
T ss_pred cCCceeEEEECCCCCEEEeecCCCcEeccccCCccccceeccCCCceEEEEEecCCcEEEEcC-CCeEEEEECCCCCcee
Confidence 4567888998755 8888888887777765533 33445799999999998 77888888 9999999998765322
Q ss_pred cccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcCCCCEEEEEeCCCcEEEEEccCCe--EEEEeec
Q 047325 117 HKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCGLLYTASWDRTFKVWRISDSK--CLESVSA 194 (368)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~--~~~~~~~ 194 (368)
.... ....+|...|.+++|+|++++|++++.|+.|++||+.+++ ....+..
T Consensus 87 ~~~~---------------------------~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~ 139 (337)
T 1gxr_A 87 PVSQ---------------------------LDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTS 139 (337)
T ss_dssp CSEE---------------------------EECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC--EEEEEEEC
T ss_pred eeec---------------------------ccccCCCCcEEEEEEcCCCCEEEEEcCCCcEEEEECCCCCcceeeeccc
Confidence 1110 0011388999999999999999999999999999999887 6677888
Q ss_pred CCCceEEEEeCCCC-eEEEEcCCCeEEEEEcCCCCCCcccccceeeccccccEEEEEEcCCCCEEEEecCCCcEEEEeCC
Q 047325 195 HDDAVNSVVSSSEG-LIFTGSADGTVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSSSRSIVYCGSSDGLVNFWERE 273 (368)
Q Consensus 195 ~~~~v~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~ 273 (368)
|...+.+++|+|++ .+++++.||.|++||++.. .....+..|...+.+++|+|++++|++++.||.|++||++
T Consensus 140 ~~~~i~~~~~~~~~~~l~~~~~dg~v~~~d~~~~------~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~ 213 (337)
T 1gxr_A 140 SAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQ------TLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLR 213 (337)
T ss_dssp SSSCEEEEEECTTSSEEEEEETTSCEEEEETTTT------EEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETT
T ss_pred CCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCC------ceeeeeecccCceEEEEECCCCCEEEEEecCCcEEEEECC
Confidence 99999999999998 9999999999999999865 3456677789999999999999999999999999999999
Q ss_pred CccccceeeeccceEEEEEEeCCCEEEEeeCCCeEEEEecCCCceeeeEeeeccccCeeEEEEecCCeeeecCCcceEEE
Q 047325 274 KQLSHGGVLKGHKLAVLCLAAAGKLVFSGSADKTICVWRRDGAIHTCLSVLTGHTGPVKCLAVEEDRDSSSSTSSCAQRW 353 (368)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~w 353 (368)
+...............++++|++++|++++.||.|++||++... ...+..|..+|++++|+|++++
T Consensus 214 ~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~i~~~~~~~~~---~~~~~~~~~~v~~~~~~~~~~~----------- 279 (337)
T 1gxr_A 214 EGRQLQQHDFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPD---KYQLHLHESCVLSLKFAYCGKW----------- 279 (337)
T ss_dssp TTEEEEEEECSSCEEEEEECTTSSEEEEEETTSCEEEEETTSSC---EEEECCCSSCEEEEEECTTSSE-----------
T ss_pred CCceEeeecCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCC---eEEEcCCccceeEEEECCCCCE-----------
Confidence 87665443333334446667789999999999999999998763 3456789999999999999994
Q ss_pred EEeeCCcccccccC
Q 047325 354 IVYSGSLDKSDDDV 367 (368)
Q Consensus 354 ~l~sg~~D~~v~i~ 367 (368)
|++++.||.|++|
T Consensus 280 -l~~~~~dg~i~~~ 292 (337)
T 1gxr_A 280 -FVSTGKDNLLNAW 292 (337)
T ss_dssp -EEEEETTSEEEEE
T ss_pred -EEEecCCCcEEEE
Confidence 5555555555555
No 65
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=100.00 E-value=6.9e-38 Score=260.79 Aligned_cols=241 Identities=24% Similarity=0.394 Sum_probs=202.2
Q ss_pred eecccCCCCCeeEEEEe--CCEEEEEeCCCeEEEEeecCCCccccccCCccccceeeeeccCCCCceeEecccceeeeee
Q 047325 75 FCGFKASSGLVKAIVIS--GEKIFTGHQDGKIRVWKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIR 152 (368)
Q Consensus 75 ~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (368)
...+.+|...|.+++|+ +++|++|+.||.|++|++.+++... .+.+
T Consensus 16 ~~~~~gh~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~--------------------------------~~~~ 63 (312)
T 4ery_A 16 KFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEK--------------------------------TISG 63 (312)
T ss_dssp EEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEE--------------------------------EECC
T ss_pred EEEEcccCCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcccch--------------------------------hhcc
Confidence 44678999999999998 7899999999999999987765322 2334
Q ss_pred cCCCEeEEEEcCCCCEEEEEeCCCcEEEEEccCCeEEEEeecCCCceEEEEeCCCC-eEEEEcCCCeEEEEEcCCCCCCc
Q 047325 153 HSDAVSCMSLDQDCGLLYTASWDRTFKVWRISDSKCLESVSAHDDAVNSVVSSSEG-LIFTGSADGTVKVWKREQHGKGT 231 (368)
Q Consensus 153 ~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~ 231 (368)
|...|.+++|+|++++|++++.|+.|++||+++++.+..+.+|...|.++.|+|++ ++++++.|+.|++||++..
T Consensus 64 h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~---- 139 (312)
T 4ery_A 64 HKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTG---- 139 (312)
T ss_dssp CSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTC----
T ss_pred CCCceEEEEEcCCCCEEEEECCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCC----
Confidence 89999999999999999999999999999999999999999999999999999998 9999999999999999865
Q ss_pred ccccceeeccccccEEEEEEcCCCCEEEEecCCCcEEEEeCCCccccceeeeccceEE--EEEEeCCCEEEEeeCCCeEE
Q 047325 232 KHSLAQTLLKQECAVTALVVSSSRSIVYCGSSDGLVNFWEREKQLSHGGVLKGHKLAV--LCLAAAGKLVFSGSADKTIC 309 (368)
Q Consensus 232 ~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~~~dg~i~ 309 (368)
.....+..|..+|.+++|+|++++|++++.||.|++||+++++........+...+ ++++|++++|++++.||.|+
T Consensus 140 --~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~ 217 (312)
T 4ery_A 140 --KCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLK 217 (312)
T ss_dssp --CEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCSSCCCEEEEEECTTSSEEEEEETTTEEE
T ss_pred --EEEEEecCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeEEeccCCCceEEEEECCCCCEEEEEcCCCeEE
Confidence 24566778899999999999999999999999999999998766544444444444 66778899999999999999
Q ss_pred EEecCCCceeeeEeeeccccCeeE--EEEe-cCCeeeecCCcceEEEEEeeCCcccccccC
Q 047325 310 VWRRDGAIHTCLSVLTGHTGPVKC--LAVE-EDRDSSSSTSSCAQRWIVYSGSLDKSDDDV 367 (368)
Q Consensus 310 iw~~~~~~~~~~~~~~~h~~~v~~--l~~~-~~~~~~~~~~~~~~~w~l~sg~~D~~v~i~ 367 (368)
+||+... +.+..+.+|...+.. ..++ +++. .+++|+.||.|++|
T Consensus 218 iwd~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~------------~l~sg~~dg~i~vw 264 (312)
T 4ery_A 218 LWDYSKG--KCLKTYTGHKNEKYCIFANFSVTGGK------------WIVSGSEDNLVYIW 264 (312)
T ss_dssp EEETTTT--EEEEEECSSCCSSSCCCEEEECSSSC------------EEEECCTTSCEEEE
T ss_pred EEECCCC--cEEEEEEecCCceEEEEEEEEeCCCc------------EEEEECCCCEEEEE
Confidence 9999876 667778888765433 2343 5666 56677777777776
No 66
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=100.00 E-value=1.3e-37 Score=267.22 Aligned_cols=236 Identities=24% Similarity=0.430 Sum_probs=197.4
Q ss_pred cEEEEEecCC--EEEEccCCCcEEEEcCCcc--eecccCCCCCeeEEEEe--CCEEEEEeCCCeEEEEeecCCCcccccc
Q 047325 46 HIYSLAASKD--LLYTGSDSKNIRVWKNLKE--FCGFKASSGLVKAIVIS--GEKIFTGHQDGKIRVWKISPKNQSVHKR 119 (368)
Q Consensus 46 ~i~~~~~~~~--~l~s~~~dg~i~iw~~~~~--~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~vw~~~~~~~~~~~~ 119 (368)
.|.+++|+++ +|++|+.||+|++||+.+. ...+.+|...|.+++|+ +++|++++.|++|++||+.+++.....
T Consensus 125 ~v~~v~~s~dg~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~- 203 (393)
T 1erj_A 125 YIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTL- 203 (393)
T ss_dssp BEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEE-
T ss_pred eEEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEccCCCCEEEEEEcCCCCEEEEecCCCcEEEEECCCCeeEEEE-
Confidence 4999999855 9999999999999998753 55688999999999998 789999999999999999876532211
Q ss_pred CCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcC-CCCEEEEEeCCCcEEEEEccCCeEEEEe------
Q 047325 120 AGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQ-DCGLLYTASWDRTFKVWRISDSKCLESV------ 192 (368)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~------ 192 (368)
.+...+.+++++| ++++|++|+.|+.|++||+++++.+..+
T Consensus 204 --------------------------------~~~~~v~~~~~~~~~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~ 251 (393)
T 1erj_A 204 --------------------------------SIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENES 251 (393)
T ss_dssp --------------------------------ECSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC-----
T ss_pred --------------------------------EcCCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEeecccccC
Confidence 2567899999999 8999999999999999999999887776
Q ss_pred -ecCCCceEEEEeCCCC-eEEEEcCCCeEEEEEcCCCCCCc------ccccceeeccccccEEEEEEcCCCCEEEEecCC
Q 047325 193 -SAHDDAVNSVVSSSEG-LIFTGSADGTVKVWKREQHGKGT------KHSLAQTLLKQECAVTALVVSSSRSIVYCGSSD 264 (368)
Q Consensus 193 -~~~~~~v~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~------~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d 264 (368)
.+|...|.+++|+|++ .|++++.|+.|++||++...... ...+...+.+|...|.+++|+|++++|++|+.|
T Consensus 252 ~~~h~~~v~~v~~~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D 331 (393)
T 1erj_A 252 GTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKD 331 (393)
T ss_dssp -CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC---------------CEEEEEECCSSCEEEEEECGGGCEEEEEETT
T ss_pred CCCCCCCEEEEEECCCCCEEEEEeCCCEEEEEECCCCCCcccccCCCCCcceEEEecccCcEEEEEECCCCCEEEEEeCC
Confidence 5788999999999999 99999999999999997643211 112344567889999999999999999999999
Q ss_pred CcEEEEeCCCccccceeeeccceEEEEEEe--------CCCEEEEeeCCCeEEEEecCC
Q 047325 265 GLVNFWEREKQLSHGGVLKGHKLAVLCLAA--------AGKLVFSGSADKTICVWRRDG 315 (368)
Q Consensus 265 g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~--------~~~~l~~~~~dg~i~iw~~~~ 315 (368)
+.|++||.+++... ..+.+|...+.++.+ ++++|++|+.||+|++|++..
T Consensus 332 ~~v~iwd~~~~~~~-~~l~~h~~~v~~v~~~~~~~~~p~~~~l~sgs~Dg~i~iW~~~~ 389 (393)
T 1erj_A 332 RGVLFWDKKSGNPL-LMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWKYKK 389 (393)
T ss_dssp SEEEEEETTTCCEE-EEEECCSSCEEEEEECSSCTTCTTCEEEEEEETTSEEEEEEEEE
T ss_pred CeEEEEECCCCeEE-EEECCCCCCEEEEEecCCcCcCCCCCEEEEECCCCcEEECcccc
Confidence 99999999987655 567789888877764 468999999999999998754
No 67
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=100.00 E-value=5.2e-39 Score=267.62 Aligned_cols=246 Identities=18% Similarity=0.235 Sum_probs=191.3
Q ss_pred cccCCCCCeeEEEEe--CCEEEEEeCCCeEEEEeecCCCccccccCCccccceeeeeccCCCCceeEecccceeeeeecC
Q 047325 77 GFKASSGLVKAIVIS--GEKIFTGHQDGKIRVWKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHS 154 (368)
Q Consensus 77 ~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (368)
.+.+|.+.|.+++|+ +++|++|+.|++|++||+.++... ....+.+|.
T Consensus 8 ~~~~H~~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~~~------------------------------~~~~l~gH~ 57 (316)
T 3bg1_A 8 VDTSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQI------------------------------LIADLRGHE 57 (316)
T ss_dssp ------CCEEEEEECGGGCEEEEEETTTEEEEEEEETTEEE------------------------------EEEEEECCS
T ss_pred ecccccCeEEEeeEcCCCCEEEEEeCCCeEEEEEecCCCcE------------------------------EEEEEcCCC
Confidence 456899999999998 889999999999999999865311 122355699
Q ss_pred CCEeEEEEcC--CCCEEEEEeCCCcEEEEEccCC--eEEEEeecCCCceEEEEeCCC--C-eEEEEcCCCeEEEEEcCCC
Q 047325 155 DAVSCMSLDQ--DCGLLYTASWDRTFKVWRISDS--KCLESVSAHDDAVNSVVSSSE--G-LIFTGSADGTVKVWKREQH 227 (368)
Q Consensus 155 ~~v~~~~~~~--~~~~l~~~~~d~~i~iwd~~~~--~~~~~~~~~~~~v~~~~~~~~--~-~l~~~~~dg~i~i~d~~~~ 227 (368)
..|.+++|++ ++++|++|+.|++|++||++++ +.+..+.+|...|.+++|+|+ + +|++|+.|+.|++||++..
T Consensus 58 ~~V~~v~~~~~~~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~ 137 (316)
T 3bg1_A 58 GPVWQVAWAHPMYGNILASCSYDRKVIIWREENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGE 137 (316)
T ss_dssp SCEEEEEECCGGGSSCEEEEETTSCEEEECCSSSCCCEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSS
T ss_pred ccEEEEEeCCCCCCCEEEEEECCCEEEEEECCCCcceEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCC
Confidence 9999999986 4889999999999999999887 466778889999999999997 5 8999999999999999764
Q ss_pred CCCcccccceeeccccccEEEEEEcCC-----------------CCEEEEecCCCcEEEEeCCCcc--ccceeeeccceE
Q 047325 228 GKGTKHSLAQTLLKQECAVTALVVSSS-----------------RSIVYCGSSDGLVNFWEREKQL--SHGGVLKGHKLA 288 (368)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~i~~~~~~~~-----------------~~~l~~~~~dg~i~i~d~~~~~--~~~~~~~~~~~~ 288 (368)
.. .........|...+.+++|+|+ +++|++|+.|+.|++||++... .....+.+|...
T Consensus 138 ~~---~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~~h~~~ 214 (316)
T 3bg1_A 138 GQ---WEVKKINNAHTIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAHSDW 214 (316)
T ss_dssp SC---EEECCBTTSSSSCBCCCEECCCCCC------CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECCBCCSSC
T ss_pred CC---cceeeeeccccCCcceEEEccccCCccccccccccCccccceEEEecCCCeEEEEEeCCCCccceeeecccCCCc
Confidence 21 1123445678888999999997 4789999999999999997542 233566788888
Q ss_pred EEEEE--eCC----CEEEEeeCCCeEEEEecCCCc--eeeeEeeeccccCeeEEEEecCCeeeecCCcceEEEEEeeCCc
Q 047325 289 VLCLA--AAG----KLVFSGSADKTICVWRRDGAI--HTCLSVLTGHTGPVKCLAVEEDRDSSSSTSSCAQRWIVYSGSL 360 (368)
Q Consensus 289 ~~~~~--~~~----~~l~~~~~dg~i~iw~~~~~~--~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~w~l~sg~~ 360 (368)
|.++. |++ .+|++|+.||+|++|+++... ......+..|...|.+++|+|++.. |++|+.
T Consensus 215 V~~v~~sp~~~~~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~------------las~~~ 282 (316)
T 3bg1_A 215 VRDVAWAPSIGLPTSTIASCSQDGRVFIWTCDDASSNTWSPKLLHKFNDVVWHVSWSITANI------------LAVSGG 282 (316)
T ss_dssp EEEEECCCCSSCSCCEEEEEETTCEEEEEECSSTTCCCCBCCEEEECSSCEEEEEECTTTCC------------EEEEES
T ss_pred eEEEEecCCCCCCCceEEEEcCCCeEEEEEccCccccchhhhhhhcCCCcEEEEEEcCCCCE------------EEEEcC
Confidence 86665 454 789999999999999987621 1122345678999999999999994 555555
Q ss_pred ccccccC
Q 047325 361 DKSDDDV 367 (368)
Q Consensus 361 D~~v~i~ 367 (368)
|++|++|
T Consensus 283 D~~v~lw 289 (316)
T 3bg1_A 283 DNKVTLW 289 (316)
T ss_dssp SSCEEEE
T ss_pred CCeEEEE
Confidence 5555555
No 68
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=100.00 E-value=1.2e-37 Score=265.26 Aligned_cols=285 Identities=17% Similarity=0.246 Sum_probs=224.3
Q ss_pred cccCCCceeeeccCcCCcEEEEEecC-----CEEEEccCCCcEEEEcCCc---ce-ecccCCCCCeeEEEEe--CCEEEE
Q 047325 29 ENLPQNGLIGSLVREEGHIYSLAASK-----DLLYTGSDSKNIRVWKNLK---EF-CGFKASSGLVKAIVIS--GEKIFT 97 (368)
Q Consensus 29 ~~~~~~~~~~~~~~h~~~i~~~~~~~-----~~l~s~~~dg~i~iw~~~~---~~-~~~~~~~~~v~~~~~~--~~~l~s 97 (368)
....+...+..+.+|.+.|++++|++ ++|++|+.||.|++||+.. .. ..+.+|...|.+++|+ +++|++
T Consensus 24 ~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s 103 (368)
T 3mmy_A 24 DNHNPMKDIEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFT 103 (368)
T ss_dssp CSSCTTCCEECSSCCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCEEEEEEEECSSCEEEEEECTTSSEEEE
T ss_pred CCCCCcceeEeccCCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCceeEEEeccccCCEEEEEECcCCCEEEE
Confidence 34455667788999999999999985 4899999999999999874 22 5678899999999998 779999
Q ss_pred EeCCCeEEEEeecCCCccccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEE--cCCCCEEEEEeCC
Q 047325 98 GHQDGKIRVWKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSL--DQDCGLLYTASWD 175 (368)
Q Consensus 98 ~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~~~l~~~~~d 175 (368)
++.||.|++||+++++... +.+|...|.+++| +|++++|++++.|
T Consensus 104 ~~~dg~v~iwd~~~~~~~~---------------------------------~~~~~~~v~~~~~~~~~~~~~l~~~~~d 150 (368)
T 3mmy_A 104 ASCDKTAKMWDLSSNQAIQ---------------------------------IAQHDAPVKTIHWIKAPNYSCVMTGSWD 150 (368)
T ss_dssp EETTSEEEEEETTTTEEEE---------------------------------EEECSSCEEEEEEEECSSCEEEEEEETT
T ss_pred EcCCCcEEEEEcCCCCcee---------------------------------eccccCceEEEEEEeCCCCCEEEEccCC
Confidence 9999999999998765321 2349999999999 8899999999999
Q ss_pred CcEEEEEccCCeEEEEeecCCCceEEEEeCCCCeEEEEcCCCeEEEEEcCCCCCCcccccceeeccccccEEEEEEcCCC
Q 047325 176 RTFKVWRISDSKCLESVSAHDDAVNSVVSSSEGLIFTGSADGTVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSSSR 255 (368)
Q Consensus 176 ~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 255 (368)
+.|++||+++++++..+..+. .+.++.+.++ .+++++.++.+++|+++.... ..............++.+.++.
T Consensus 151 g~i~vwd~~~~~~~~~~~~~~-~~~~~~~~~~-~~~~~~~~~~i~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~ 224 (368)
T 3mmy_A 151 KTLKFWDTRSSNPMMVLQLPE-RCYCADVIYP-MAVVATAERGLIVYQLENQPS----EFRRIESPLKHQHRCVAIFKDK 224 (368)
T ss_dssp SEEEEECSSCSSCSEEEECSS-CEEEEEEETT-EEEEEEGGGCEEEEECSSSCE----EEEECCCSCSSCEEEEEEEECT
T ss_pred CcEEEEECCCCcEEEEEecCC-CceEEEecCC-eeEEEeCCCcEEEEEeccccc----hhhhccccccCCCceEEEcccC
Confidence 999999999999998888665 5666666644 778888899999999986532 1111222233445566665554
Q ss_pred CE----EEEecCCCcEEEEeCCCcc--ccceeeeccce------------EE--EEEEeCCCEEEEeeCCCeEEEEecCC
Q 047325 256 SI----VYCGSSDGLVNFWEREKQL--SHGGVLKGHKL------------AV--LCLAAAGKLVFSGSADKTICVWRRDG 315 (368)
Q Consensus 256 ~~----l~~~~~dg~i~i~d~~~~~--~~~~~~~~~~~------------~~--~~~~~~~~~l~~~~~dg~i~iw~~~~ 315 (368)
.. +++++.||.|++||++... .....+..|.. .+ ++++|++++|++|+.||.|++||+.+
T Consensus 225 ~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~ 304 (368)
T 3mmy_A 225 QNKPTGFALGSIEGRVAIHYINPPNPAKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDA 304 (368)
T ss_dssp TSCEEEEEEEETTSEEEEEESSCSCHHHHSEEEECSEEC----CCCEEECCEEEEEECTTTCCEEEEETTSCEEEEETTT
T ss_pred CCCCCeEEEecCCCcEEEEecCCCCccccceeeeeeecccccccccccccceEEEEEecCCCEEEEEccCCeEEEEECCC
Confidence 44 9999999999999998753 23345555553 34 55667899999999999999999987
Q ss_pred CceeeeEeeeccccCeeEEEEecCCeeeecCCcceEEEEEeeCCccccccc
Q 047325 316 AIHTCLSVLTGHTGPVKCLAVEEDRDSSSSTSSCAQRWIVYSGSLDKSDDD 366 (368)
Q Consensus 316 ~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~w~l~sg~~D~~v~i 366 (368)
. .++..+.+|..+|++++|+|++. .|++|+.|+..+.
T Consensus 305 ~--~~~~~~~~~~~~v~~~~~s~~g~------------~l~~~s~d~~~~~ 341 (368)
T 3mmy_A 305 R--TKLKTSEQLDQPISACCFNHNGN------------IFAYASSYDWSKG 341 (368)
T ss_dssp T--EEEEECCCCSSCEEEEEECTTSS------------CEEEEECCCSTTC
T ss_pred C--cEEEEecCCCCCceEEEECCCCC------------eEEEEeccccccc
Confidence 6 77888899999999999999999 4566665554443
No 69
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=100.00 E-value=3e-37 Score=257.59 Aligned_cols=271 Identities=17% Similarity=0.263 Sum_probs=219.1
Q ss_pred EEEEEecCC-EEEEccCCCcEEEEcCCcc--ee--cccCCCCCeeEEEEe--CCEEEEEeCCCeEEEEeecCCCcccccc
Q 047325 47 IYSLAASKD-LLYTGSDSKNIRVWKNLKE--FC--GFKASSGLVKAIVIS--GEKIFTGHQDGKIRVWKISPKNQSVHKR 119 (368)
Q Consensus 47 i~~~~~~~~-~l~s~~~dg~i~iw~~~~~--~~--~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~vw~~~~~~~~~~~~ 119 (368)
.++|+|+++ +||+| .|++|+|||+.+. +. .+..|...|.+++|+ +++|++|+.||+|++||+++++...
T Consensus 28 ~~~l~WS~~~~lAvg-~D~tV~iWd~~tg~~~~~~~~~~~~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~~~~~~--- 103 (318)
T 4ggc_A 28 LNLVDWSSGNVLAVA-LDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLR--- 103 (318)
T ss_dssp CBCEEECTTSEEEEE-ETTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEE---
T ss_pred ceEEEECCCCEEEEE-eCCEEEEEECCCCCEEEEEEecCCCCeEEEEEECCCCCEEEEEECCCcEEEeecCCceeEE---
Confidence 567899866 66665 5999999998753 23 345788899999998 7899999999999999998876422
Q ss_pred CCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcCCCCEEEEEeCCCcEEEEEccCC-eEEEEeecCCCc
Q 047325 120 AGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCGLLYTASWDRTFKVWRISDS-KCLESVSAHDDA 198 (368)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~-~~~~~~~~~~~~ 198 (368)
.+.+|...+.++.+. +..+++++.++.+++|+.... ..+..+.+|...
T Consensus 104 -----------------------------~~~~h~~~~~~~~~~--~~~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (318)
T 4ggc_A 104 -----------------------------NMTSHSARVGSLSWN--SYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQE 152 (318)
T ss_dssp -----------------------------EEECCSSCEEEEEEE--TTEEEEEETTSEEEEEETTSSSCEEEEEECCSSC
T ss_pred -----------------------------EecCccceEEEeecC--CCEEEEEecCCceEeeecCCCceeEEEEcCccCc
Confidence 233488888776654 569999999999999998765 556778899999
Q ss_pred eEEEEeCCCC-eEEEEcCCCeEEEEEcCCCCCCcccccceeeccccccEEEEEEcCCCCE---EEEecCCCcEEEEeCCC
Q 047325 199 VNSVVSSSEG-LIFTGSADGTVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSSSRSI---VYCGSSDGLVNFWEREK 274 (368)
Q Consensus 199 v~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~---l~~~~~dg~i~i~d~~~ 274 (368)
+..+.+.+++ ++++++.|+.|++||++.... ..........+...|.++.++|++.. +++++.++.|++||.+.
T Consensus 153 ~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~--~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~ 230 (318)
T 4ggc_A 153 VCGLRWAPDGRHLASGGNDNLVNVWPSAPGEG--GWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCS 230 (318)
T ss_dssp EEEEEECTTSSEEEEEETTSCEEEEESSCBTT--BSCCSEEECCCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTT
T ss_pred eEEEEEcCCCCEEEEEecCcceeEEECCCCcc--cccceeeecccCCceEEEEecCCCCcEEEEEecCCCCEEEEEeccc
Confidence 9999999999 999999999999999986532 12234455667888999999997653 34678899999999988
Q ss_pred ccccceeeeccceEEEEEEeCCCEEEEee--CCCeEEEEecCCCceeeeEeeeccccCeeEEEEecCCeeeecCCcceEE
Q 047325 275 QLSHGGVLKGHKLAVLCLAAAGKLVFSGS--ADKTICVWRRDGAIHTCLSVLTGHTGPVKCLAVEEDRDSSSSTSSCAQR 352 (368)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~ 352 (368)
................++.+++..+++++ .|+.|++||+++. +++.++.+|.++|++++|+|++.
T Consensus 231 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~sg~~d~~i~iwd~~~~--~~~~~l~gH~~~V~~l~~spdg~----------- 297 (318)
T 4ggc_A 231 GACLSAVDAHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTM--AKVAELKGHTSRVLSLTMSPDGA----------- 297 (318)
T ss_dssp CCEEEEEECSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTC--CEEEEECCCSSCEEEEEECTTSS-----------
T ss_pred ccccccccceeeeeeeeecccccceEEEEEcCCCEEEEEECCCC--cEEEEEcCCCCCEEEEEEcCCCC-----------
Confidence 76665555455556677888888777654 7999999999876 77889999999999999999999
Q ss_pred EEEeeCCcccccccCC
Q 047325 353 WIVYSGSLDKSDDDVH 368 (368)
Q Consensus 353 w~l~sg~~D~~v~i~h 368 (368)
.|+|||.||+||+|.
T Consensus 298 -~l~S~s~D~~v~iWd 312 (318)
T 4ggc_A 298 -TVASAAADETLRLWR 312 (318)
T ss_dssp -CEEEEETTTEEEEEC
T ss_pred -EEEEEecCCeEEEEE
Confidence 788999999999983
No 70
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=100.00 E-value=1.1e-37 Score=292.40 Aligned_cols=266 Identities=20% Similarity=0.280 Sum_probs=229.2
Q ss_pred ceeeeccCcCCcEEEEEecCC--EEEEccCCCcEEEEcCCc--ceecccCCCCCeeEEEEe--CCEEEEEeCCCeEEEEe
Q 047325 35 GLIGSLVREEGHIYSLAASKD--LLYTGSDSKNIRVWKNLK--EFCGFKASSGLVKAIVIS--GEKIFTGHQDGKIRVWK 108 (368)
Q Consensus 35 ~~~~~~~~h~~~i~~~~~~~~--~l~s~~~dg~i~iw~~~~--~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~vw~ 108 (368)
.+.+.+.+|.+.|.+++|+++ +|++|+.||.|++||+.+ ....+..|..+|.+++|+ +++|++++.||.|++||
T Consensus 4 ~~~~~~~~h~~~v~~i~~sp~~~~la~~~~~g~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~ 83 (814)
T 3mkq_A 4 DIKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVEIWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFN 83 (814)
T ss_dssp CCEEEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEE
T ss_pred ccceeeecCCCceEEEEECCCCCEEEEEeCCCEEEEEECCCCceEEEEecCCCcEEEEEEeCCCCEEEEEeCCCeEEEEE
Confidence 456778999999999999866 999999999999999874 456788999999999998 88999999999999999
Q ss_pred ecCCCccccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcCCCCEEEEEeCCCcEEEEEccCC-e
Q 047325 109 ISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCGLLYTASWDRTFKVWRISDS-K 187 (368)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~-~ 187 (368)
+.+++... .+.+|...|++++|+|++++|++++.||.|++||+.++ .
T Consensus 84 ~~~~~~~~--------------------------------~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~ 131 (814)
T 3mkq_A 84 YNTGEKVV--------------------------------DFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWA 131 (814)
T ss_dssp TTTCCEEE--------------------------------EEECCSSCEEEEEECSSSSEEEEEETTSEEEEEEGGGTSE
T ss_pred CCCCcEEE--------------------------------EEecCCCCEEEEEEeCCCCEEEEEcCCCEEEEEECCCCce
Confidence 98775322 23449999999999999999999999999999999987 7
Q ss_pred EEEEeecCCCceEEEEeCC-CC-eEEEEcCCCeEEEEEcCCCCCCcccccceeec-cccccEEEEEEcC--CCCEEEEec
Q 047325 188 CLESVSAHDDAVNSVVSSS-EG-LIFTGSADGTVKVWKREQHGKGTKHSLAQTLL-KQECAVTALVVSS--SRSIVYCGS 262 (368)
Q Consensus 188 ~~~~~~~~~~~v~~~~~~~-~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~-~~~~~i~~~~~~~--~~~~l~~~~ 262 (368)
....+.+|...|.+++|+| ++ .+++++.||.|++||++.... ..... .+...+.+++|+| ++++|++++
T Consensus 132 ~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~vwd~~~~~~------~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~ 205 (814)
T 3mkq_A 132 LEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTP------NFTLTTGQERGVNYVDYYPLPDKPYMITAS 205 (814)
T ss_dssp EEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCSSC------SEEEECCCTTCCCEEEECCSTTCCEEEEEC
T ss_pred EEEEEcCCCCcEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcc------eeEEecCCCCCEEEEEEEECCCCCEEEEEe
Confidence 7788889999999999999 66 999999999999999976532 23333 3448899999999 999999999
Q ss_pred CCCcEEEEeCCCccccceeeeccceEE--EEEEeCCCEEEEeeCCCeEEEEecCCCceeeeEeeeccccCeeEEEEecCC
Q 047325 263 SDGLVNFWEREKQLSHGGVLKGHKLAV--LCLAAAGKLVFSGSADKTICVWRRDGAIHTCLSVLTGHTGPVKCLAVEEDR 340 (368)
Q Consensus 263 ~dg~i~i~d~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~l~~~~~~ 340 (368)
.||.|++||++++... ..+.+|...+ .+++|++++|++++.||.|++||+.+. ..+..+..|...+.+++|+|++
T Consensus 206 ~dg~i~~~d~~~~~~~-~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~v~vwd~~~~--~~~~~~~~~~~~v~~~~~~~~~ 282 (814)
T 3mkq_A 206 DDLTIKIWDYQTKSCV-ATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTY--KVEKTLNVGLERSWCIATHPTG 282 (814)
T ss_dssp TTSEEEEEETTTTEEE-EEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTC--SEEEEECCSSSSEEEEEECTTC
T ss_pred CCCEEEEEECCCCcEE-EEEcCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCC--cEEEEeecCCCcEEEEEEccCC
Confidence 9999999999887654 5566676666 455678999999999999999998876 6777888899999999999998
Q ss_pred e
Q 047325 341 D 341 (368)
Q Consensus 341 ~ 341 (368)
.
T Consensus 283 ~ 283 (814)
T 3mkq_A 283 R 283 (814)
T ss_dssp G
T ss_pred C
Confidence 7
No 71
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=100.00 E-value=3.2e-37 Score=260.01 Aligned_cols=253 Identities=17% Similarity=0.258 Sum_probs=199.9
Q ss_pred ceecccCCCCCeeEEEE--------eCCEEEEEeCCCeEEEEeecCCCccccccCCccccceeeeeccCCCCceeEeccc
Q 047325 74 EFCGFKASSGLVKAIVI--------SGEKIFTGHQDGKIRVWKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRH 145 (368)
Q Consensus 74 ~~~~~~~~~~~v~~~~~--------~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (368)
....+.+|...|++++| ++.+|++|+.|++|++||+...+..... ..
T Consensus 13 ~~~~l~gH~~~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~~~-------------------------~~ 67 (343)
T 2xzm_R 13 KRGILEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYF-------------------------GI 67 (343)
T ss_dssp EEEEEECCSSCEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSSBS-------------------------EE
T ss_pred eeeeeccchhhhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCccccc-------------------------cc
Confidence 34567899999999999 3679999999999999999765421100 01
Q ss_pred ceeeeeecCCCEeEEEEcCCCCEEEEEeCCCcEEEEEccCCeEEEEeecCCCceEEEEeCCCC-eEEEEcCCCeEEEEEc
Q 047325 146 RTALWIRHSDAVSCMSLDQDCGLLYTASWDRTFKVWRISDSKCLESVSAHDDAVNSVVSSSEG-LIFTGSADGTVKVWKR 224 (368)
Q Consensus 146 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~dg~i~i~d~ 224 (368)
....+.+|...|.+++|+|++.++++++.|++|++||+++++.+..+.+|...|.+++|+|++ +|++++.|+.|++||+
T Consensus 68 ~~~~l~~h~~~V~~~~~~~~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~~~d~~i~~wd~ 147 (343)
T 2xzm_R 68 PHKALTGHNHFVSDLALSQENCFAISSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNI 147 (343)
T ss_dssp EEEEECCCSSCEEEEEECSSTTEEEEEETTSEEEEEETTSSCEEEEEECCCSCEEEEEECSSTTEEEEEETTSCEEEEES
T ss_pred ccchhccCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcEEEEEECCCCCEEEEEcCCCEEEEEec
Confidence 123456799999999999999999999999999999999999999999999999999999999 9999999999999999
Q ss_pred CCCCCCcccccceeeccccccEEEEEEcCCC----------CEEEEecCCCcEEEEeCCCccccceeeeccceEEEE--E
Q 047325 225 EQHGKGTKHSLAQTLLKQECAVTALVVSSSR----------SIVYCGSSDGLVNFWEREKQLSHGGVLKGHKLAVLC--L 292 (368)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~----------~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~--~ 292 (368)
+... .........|...|.+++|+|++ .+|++++.||.|++||... .....+.+|...+.+ +
T Consensus 148 ~~~~----~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~--~~~~~~~~h~~~v~~~~~ 221 (343)
T 2xzm_R 148 LGEC----KFSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNTNF--QIRYTFKAHESNVNHLSI 221 (343)
T ss_dssp SSCE----EEECCTTTSCSSCEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEETTT--EEEEEEECCSSCEEEEEE
T ss_pred cCCc----eeeeecccCCCceeeeeeeccccccccccCCCCCEEEEEcCCCEEEEEcCCC--ceeEEEcCccccceEEEE
Confidence 7321 11112223688899999999987 7999999999999999543 233456678777754 5
Q ss_pred EeCCCEEEEeeCCCeEEEEecCCCceeeeEeeeccccCeeEEEEecCCeeeecC-CcceEEEEEeeCC
Q 047325 293 AAAGKLVFSGSADKTICVWRRDGAIHTCLSVLTGHTGPVKCLAVEEDRDSSSST-SSCAQRWIVYSGS 359 (368)
Q Consensus 293 ~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~-~~~~~~w~l~sg~ 359 (368)
+|++++|++|+.||.|++||+.... .....+ .+...|++++|+|++.+++++ ++..++|.+.++.
T Consensus 222 s~~g~~l~sgs~dg~v~iwd~~~~~-~~~~~~-~~~~~v~~v~~sp~~~~la~~~d~~v~iw~~~~~~ 287 (343)
T 2xzm_R 222 SPNGKYIATGGKDKKLLIWDILNLT-YPQREF-DAGSTINQIAFNPKLQWVAVGTDQGVKIFNLMTQS 287 (343)
T ss_dssp CTTSSEEEEEETTCEEEEEESSCCS-SCSEEE-ECSSCEEEEEECSSSCEEEEEESSCEEEEESSSCC
T ss_pred CCCCCEEEEEcCCCeEEEEECCCCc-ccceee-cCCCcEEEEEECCCCCEEEEECCCCEEEEEeCCCC
Confidence 5689999999999999999985431 223333 355679999999999977655 4557788776543
No 72
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=8.7e-38 Score=305.32 Aligned_cols=285 Identities=19% Similarity=0.255 Sum_probs=238.0
Q ss_pred eeeeccCcCCcEEEEEecCC--EEEEccCCCcEEEEcCCc--ceecccCCCCCeeEEEEe--CCEEEEEeCCCeEEEEee
Q 047325 36 LIGSLVREEGHIYSLAASKD--LLYTGSDSKNIRVWKNLK--EFCGFKASSGLVKAIVIS--GEKIFTGHQDGKIRVWKI 109 (368)
Q Consensus 36 ~~~~~~~h~~~i~~~~~~~~--~l~s~~~dg~i~iw~~~~--~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~vw~~ 109 (368)
....+.+|.+.|++++|+++ +|++|+.||+|++||..+ ....+.+|...|.+++|+ +++|++++.||.|++||+
T Consensus 607 ~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~ 686 (1249)
T 3sfz_A 607 SRLVVRPHTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDS 686 (1249)
T ss_dssp CSEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEET
T ss_pred ceEEEecccccEEEEEECCCCCEEEEEeCCCeEEEEECCCCCEEEEeccCCCCEEEEEEecCCCEEEEEeCCCeEEEEEC
Confidence 34467899999999999865 999999999999999874 466788999999999998 789999999999999999
Q ss_pred cCCCccccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcC--CCCEEEEEeCCCcEEEEEccCCe
Q 047325 110 SPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQ--DCGLLYTASWDRTFKVWRISDSK 187 (368)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~d~~i~iwd~~~~~ 187 (368)
.+++... .+.+|...|.+++|+| ++.++++++.|+.|++||+.+++
T Consensus 687 ~~~~~~~--------------------------------~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~ 734 (1249)
T 3sfz_A 687 ATGKLVH--------------------------------TYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKE 734 (1249)
T ss_dssp TTCCEEE--------------------------------EEECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSS
T ss_pred CCCceEE--------------------------------EEcCCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcc
Confidence 8775322 3345999999999999 55689999999999999999999
Q ss_pred EEEEeecCCCceEEEEeCCCC-eEEEEcCCCeEEEEEcCCCCCCcccccce-------eeccccccEEEEEEcCCCCEEE
Q 047325 188 CLESVSAHDDAVNSVVSSSEG-LIFTGSADGTVKVWKREQHGKGTKHSLAQ-------TLLKQECAVTALVVSSSRSIVY 259 (368)
Q Consensus 188 ~~~~~~~~~~~v~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~-------~~~~~~~~i~~~~~~~~~~~l~ 259 (368)
++..+.+|...|.+++|+|++ .+++++.||.|++||++............ ........+.+++|+|+++.++
T Consensus 735 ~~~~~~~h~~~v~~~~~sp~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~ 814 (1249)
T 3sfz_A 735 CRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKII 814 (1249)
T ss_dssp EEEEECCCSSCEEEEEECSSTTEEEEEESSSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEE
T ss_pred hhheecCCCCCEEEEEEecCCCEEEEEECCCeEEEEeCCCCcccceecccccccccCCccccccceEEEEEECCCCCEEE
Confidence 999999999999999999999 99999999999999998653211100000 0112234688999999999999
Q ss_pred EecCCCcEEEEeCCCccccceeeeccceEE--EEEEeCCCEEEEeeCCCeEEEEecCCCceeeeEeeeccccCeeEEEEe
Q 047325 260 CGSSDGLVNFWEREKQLSHGGVLKGHKLAV--LCLAAAGKLVFSGSADKTICVWRRDGAIHTCLSVLTGHTGPVKCLAVE 337 (368)
Q Consensus 260 ~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~l~~~ 337 (368)
+++ ++.+.+||+.++........+|...+ .+++|++.++++++.||.|++|++.+. ..+..+.+|...|++++|+
T Consensus 815 ~~~-~~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~v~vwd~~~~--~~~~~~~~h~~~v~~v~~s 891 (1249)
T 3sfz_A 815 VAA-KNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYDHLAVIALSQYCVELWNIDSR--LKVADCRGHLSWVHGVMFS 891 (1249)
T ss_dssp EEE-TTEEEEEETTTCCEEEEEECSSSSCCCEEEECSSTTEEEEECSSSCEEEEETTTT--EEEEEECCCSSCEEEEEEC
T ss_pred EEc-CCcEEEEEecCCCceeEEcCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCC--ceeeecCCCccceEEEEEC
Confidence 987 68999999998877655555676665 566678999999999999999999876 6778889999999999999
Q ss_pred cCCeeeecCCcceEEEEEeeCCcccccccC
Q 047325 338 EDRDSSSSTSSCAQRWIVYSGSLDKSDDDV 367 (368)
Q Consensus 338 ~~~~~~~~~~~~~~~w~l~sg~~D~~v~i~ 367 (368)
|++. .+++++.|+.|++|
T Consensus 892 pdg~------------~l~s~s~dg~v~vw 909 (1249)
T 3sfz_A 892 PDGS------------SFLTASDDQTIRVW 909 (1249)
T ss_dssp TTSS------------EEEEEETTSCEEEE
T ss_pred CCCC------------EEEEEeCCCeEEEE
Confidence 9999 57777777777777
No 73
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.6e-37 Score=288.72 Aligned_cols=195 Identities=9% Similarity=0.083 Sum_probs=163.2
Q ss_pred ccCcCCcEEEEEecCC--EEEEccCCCcEEEEcCCcceec-ccCCCCCeeEEEEe-CCEEEEEeCCCeEEEEeecCCCcc
Q 047325 40 LVREEGHIYSLAASKD--LLYTGSDSKNIRVWKNLKEFCG-FKASSGLVKAIVIS-GEKIFTGHQDGKIRVWKISPKNQS 115 (368)
Q Consensus 40 ~~~h~~~i~~~~~~~~--~l~s~~~dg~i~iw~~~~~~~~-~~~~~~~v~~~~~~-~~~l~s~~~dg~i~vw~~~~~~~~ 115 (368)
..+|.+.|++++|+++ +||+|+.||+|++|+....... ...|...|.+++|+ +++|++++.|++|++||+.+++..
T Consensus 13 ~~gh~~~V~~lafspdg~~lAsgs~Dg~I~lw~~~~~~~~~~~~~~~~V~~l~fspg~~L~S~s~D~~v~lWd~~~~~~~ 92 (902)
T 2oaj_A 13 KYGMSSKPIAAAFDFTQNLLAIATVTGEVHIYGQQQVEVVIKLEDRSAIKEMRFVKGIYLVVINAKDTVYVLSLYSQKVL 92 (902)
T ss_dssp EEECSSCEEEEEEETTTTEEEEEETTSEEEEECSTTCEEEEECSSCCCEEEEEEETTTEEEEEETTCEEEEEETTTCSEE
T ss_pred ccCCCCCcEEEEECCCCCEEEEEeCCCEEEEEeCCCcEEEEEcCCCCCEEEEEEcCCCEEEEEECcCeEEEEECCCCcEE
Confidence 4589999999999865 9999999999999998754332 23578899999999 778999999999999999876532
Q ss_pred ccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcCCCCEEEEEeCCCcEEEEEccCCeEE------
Q 047325 116 VHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCGLLYTASWDRTFKVWRISDSKCL------ 189 (368)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~------ 189 (368)
... .|...|++++|+|++++|++|+.||.|++||+++++..
T Consensus 93 ~~~---------------------------------~~~~~V~~v~~sp~g~~l~sgs~dg~V~lwd~~~~~~~~~~i~~ 139 (902)
T 2oaj_A 93 TTV---------------------------------FVPGKITSIDTDASLDWMLIGLQNGSMIVYDIDRDQLSSFKLDN 139 (902)
T ss_dssp EEE---------------------------------ECSSCEEEEECCTTCSEEEEEETTSCEEEEETTTTEEEEEEECC
T ss_pred EEE---------------------------------cCCCCEEEEEECCCCCEEEEEcCCCcEEEEECCCCccccceecc
Confidence 211 16678999999999999999999999999999988764
Q ss_pred -----EEeecCCCceEEEEeCCCC--eEEEEcCCCeEEEEEcCCCCCCcccccceeec------------------cccc
Q 047325 190 -----ESVSAHDDAVNSVVSSSEG--LIFTGSADGTVKVWKREQHGKGTKHSLAQTLL------------------KQEC 244 (368)
Q Consensus 190 -----~~~~~~~~~v~~~~~~~~~--~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~------------------~~~~ 244 (368)
..+.+|...|.+++|+|++ .+++|+.||.| +||++... ....+. .|..
T Consensus 140 ~~~~~~~~~~h~~~V~sl~~sp~~~~~l~~g~~dg~v-lWd~~~~~------~~~~~~~~~~~g~~~~~~~~~~~~~h~~ 212 (902)
T 2oaj_A 140 LQKSSFFPAARLSPIVSIQWNPRDIGTVLISYEYVTL-TYSLVENE------IKQSFIYELPPFAPGGDFSEKTNEKRTP 212 (902)
T ss_dssp HHHHHTCSSSCCCCCCEEEEETTEEEEEEEECSSCEE-EEETTTTE------EEEEECCCBCTTCCCSTTCCCTTSCBCC
T ss_pred ccccccccccCCCCeEEEEEccCCCCEEEEEeCCCcE-EEECCCCc------eEEEEecccCCcCCCcccccccccccCC
Confidence 2345688999999999974 89999999999 99998652 222232 2357
Q ss_pred cEEEEEEcCCCCEEEEecCCCcEEEEeCCC
Q 047325 245 AVTALVVSSSRSIVYCGSSDGLVNFWEREK 274 (368)
Q Consensus 245 ~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~ 274 (368)
.|.+++|+|++++|++++.||.|++||+++
T Consensus 213 ~V~~v~fspdg~~lasgs~Dg~i~lWd~~~ 242 (902)
T 2oaj_A 213 KVIQSLYHPNSLHIITIHEDNSLVFWDANS 242 (902)
T ss_dssp CEEEEEECTTSSEEEEEETTCCEEEEETTT
T ss_pred CeEEEEEcCCCCEEEEEECCCeEEEEECCC
Confidence 799999999999999999999999999864
No 74
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=100.00 E-value=2.7e-38 Score=270.15 Aligned_cols=246 Identities=16% Similarity=0.193 Sum_probs=195.0
Q ss_pred cEEEEcCCc--ceecccCCCCCeeEEEEe--CCEEEEEeCCCeEEEEeecCCCccccccCCccccceeeeeccCCCCcee
Q 047325 65 NIRVWKNLK--EFCGFKASSGLVKAIVIS--GEKIFTGHQDGKIRVWKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYI 140 (368)
Q Consensus 65 ~i~iw~~~~--~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (368)
.+..|+... ....+.+|.+.|++++|+ +++|++|+.||+|++||+.+++...
T Consensus 47 ~~~~~~~~~~~~~~~l~gH~~~V~~~~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~------------------------ 102 (380)
T 3iz6_a 47 TAVSFNPTDLVCCRTLQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTH------------------------ 102 (380)
T ss_dssp GCCCCCCCCCEEEEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEE------------------------
T ss_pred cccccccceeEEeecccccccEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCccce------------------------
Confidence 344455543 345688999999999998 7899999999999999998765322
Q ss_pred EecccceeeeeecCCCEeEEEEcCCCCEEEEEeCCCcEEEEEccCCe-------EEEEeecCCCceEEEEeCCCC--eEE
Q 047325 141 EVRRHRTALWIRHSDAVSCMSLDQDCGLLYTASWDRTFKVWRISDSK-------CLESVSAHDDAVNSVVSSSEG--LIF 211 (368)
Q Consensus 141 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~-------~~~~~~~~~~~v~~~~~~~~~--~l~ 211 (368)
.+.+|...|.+++|+|++++|++|+.|+.+++||+.+.. ....+.+|...+.++.|.|++ .|+
T Consensus 103 --------~~~~h~~~v~~~~~s~~g~~las~~~d~~v~iw~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~ 174 (380)
T 3iz6_a 103 --------AIKLHCPWVMECAFAPNGQSVACGGLDSACSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLI 174 (380)
T ss_dssp --------EEECCCTTCCCCEECTTSSEEEECCSSSCCEEEECCCCSSCCCSSTTCCBCCCCSSCCCCCBCCSSSSSCEE
T ss_pred --------EEecCCCCEEEEEECCCCCEEEEeeCCCcEEEEECCCCccccCCccceeeccCCCcceEEEEEecCCCCEEE
Confidence 234488999999999999999999999999999987532 345677899999999999975 799
Q ss_pred EEcCCCeEEEEEcCCCCCCcccccceeeccccccEEEEEEcC-CCCEEEEecCCCcEEEEeCCCccccceeeeccceEE-
Q 047325 212 TGSADGTVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSS-SRSIVYCGSSDGLVNFWEREKQLSHGGVLKGHKLAV- 289 (368)
Q Consensus 212 ~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~- 289 (368)
+|+.|+.|++||++.+...... ......+|...|.++++++ ++++|++|+.|+.|++||++........+.+|...|
T Consensus 175 s~s~D~~i~~wd~~~~~~~~~~-~~~~~~~h~~~v~~~~~~~~~~~~l~sgs~D~~v~~wd~~~~~~~~~~~~~h~~~v~ 253 (380)
T 3iz6_a 175 TGSGDQTCVLWDVTTGQRISIF-GSEFPSGHTADVLSLSINSLNANMFISGSCDTTVRLWDLRITSRAVRTYHGHEGDIN 253 (380)
T ss_dssp EECTTSCEEEECTTTCCEEEEE-CCCSSSSCCSCEEEEEECSSSCCEEEEEETTSCEEEEETTTTCCCCEEECCCSSCCC
T ss_pred EECCCCcEEEEEcCCCcEEEEe-ecccCCCCccCeEEEEeecCCCCEEEEEECCCeEEEEECCCCCcceEEECCcCCCeE
Confidence 9999999999999876321000 0011256888999999987 889999999999999999986555556778888777
Q ss_pred -EEEEeCCCEEEEeeCCCeEEEEecCCCceeeeEeeeccc-------cCeeEEEEecCCeeeec
Q 047325 290 -LCLAAAGKLVFSGSADKTICVWRRDGAIHTCLSVLTGHT-------GPVKCLAVEEDRDSSSS 345 (368)
Q Consensus 290 -~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~-------~~v~~l~~~~~~~~~~~ 345 (368)
++++|++++|++|+.||+|++||+.++ ..+..+..+. ..|++++|+|++.++++
T Consensus 254 ~v~~~p~~~~l~s~s~D~~i~lwd~~~~--~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~ 315 (380)
T 3iz6_a 254 SVKFFPDGQRFGTGSDDGTCRLFDMRTG--HQLQVYNREPDRNDNELPIVTSVAFSISGRLLFA 315 (380)
T ss_dssp EEEECTTSSEEEEECSSSCEEEEETTTT--EEEEEECCCCSSSCCSSCSCSEEEECSSSSEEEE
T ss_pred EEEEecCCCeEEEEcCCCeEEEEECCCC--cEEEEecccccccccccCceEEEEECCCCCEEEE
Confidence 455678999999999999999999886 4455554332 34899999999995443
No 75
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=100.00 E-value=9.4e-38 Score=263.89 Aligned_cols=288 Identities=13% Similarity=0.096 Sum_probs=204.3
Q ss_pred eeccCcCCcEEEEEecCC--EEEEccCCCcEEEEcCCc------ceecccCCCCCeeEEEEe----CCEEEEEeCCCeEE
Q 047325 38 GSLVREEGHIYSLAASKD--LLYTGSDSKNIRVWKNLK------EFCGFKASSGLVKAIVIS----GEKIFTGHQDGKIR 105 (368)
Q Consensus 38 ~~~~~h~~~i~~~~~~~~--~l~s~~~dg~i~iw~~~~------~~~~~~~~~~~v~~~~~~----~~~l~s~~~dg~i~ 105 (368)
..+.+|.+.|++++|+++ +|++|+.||.|++||+.. ....+.+|...|.+++|+ +++|++++.||.|+
T Consensus 5 ~~~~gH~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v~ 84 (351)
T 3f3f_A 5 PFDSGHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTVK 84 (351)
T ss_dssp CEECCCSSCEEEEEECSSSSEEEEEETTSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCSEEEEEETTSCEE
T ss_pred ccCcccccceeEEEEcCCCCEEEEeeCCCeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCCEEEEEcCCCeEE
Confidence 346799999999999755 999999999999999873 344567899999999996 67999999999999
Q ss_pred EEeecCCCccccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcCC--CCEEEEEeCCCcEEEEEc
Q 047325 106 VWKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQD--CGLLYTASWDRTFKVWRI 183 (368)
Q Consensus 106 vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~d~~i~iwd~ 183 (368)
+||+++++....... ......+.+|...|.+++|+|+ +++|++++.||.|++||+
T Consensus 85 vwd~~~~~~~~~~~~-----------------------~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~ 141 (351)
T 3f3f_A 85 LWEEDPDQEECSGRR-----------------------WNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDA 141 (351)
T ss_dssp EEEECTTSCTTSSCS-----------------------EEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEEC
T ss_pred EEecCCCcccccccC-----------------------cceeeeecccCCceeEEEEcCCCCCcEEEEecCCCcEEEecC
Confidence 999987753211100 0112334458999999999999 999999999999999999
Q ss_pred cCCeEEEEee-------------cCCCceEEEEeCCC---C-eEEEEcCCCeEEEEEcCCCCCCcccccceeeccccccE
Q 047325 184 SDSKCLESVS-------------AHDDAVNSVVSSSE---G-LIFTGSADGTVKVWKREQHGKGTKHSLAQTLLKQECAV 246 (368)
Q Consensus 184 ~~~~~~~~~~-------------~~~~~v~~~~~~~~---~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~i 246 (368)
++++.+..+. .|...+.+++|+|+ + .+++++.++.+.+|+..... ......+..|...|
T Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~----~~~~~~~~~h~~~i 217 (351)
T 3f3f_A 142 LEPSDLRSWTLTSEMKVLSIPPANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGK----LHVAAKLPGHKSLI 217 (351)
T ss_dssp SSTTCTTCCEEEEEEESCSCCCSSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSC----EEEEEECCCCCSCE
T ss_pred CChHHhccccccccccccccccCCcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCc----eeeeeecCCCCcce
Confidence 8876544332 57788999999997 5 99999999999888776542 13356677899999
Q ss_pred EEEEEcCCC----CEEEEecCCCcEEEEeCCCccccceeeeccceEE--EEEEeCCCEEEEe----eCCCeEEEEecCCC
Q 047325 247 TALVVSSSR----SIVYCGSSDGLVNFWEREKQLSHGGVLKGHKLAV--LCLAAAGKLVFSG----SADKTICVWRRDGA 316 (368)
Q Consensus 247 ~~~~~~~~~----~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~----~~dg~i~iw~~~~~ 316 (368)
.+++|+|++ ++|++++.||.|++||++........ ..+.... ....+....+..+ .....+.+|+. .
T Consensus 218 ~~~~~~p~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~ 294 (351)
T 3f3f_A 218 RSISWAPSIGRWYQLIATGCKDGRIRIFKITEKLSPLAS-EESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSN--L 294 (351)
T ss_dssp EEEEECCCSSCSSEEEEEEETTSCEEEEEEEECC----------------------------------------CCS--E
T ss_pred eEEEECCCCCCcceEEEEEcCCCeEEEEeCCCCcCcccc-CCcccceeccCCCcccccccccccccccceeeeeccc--c
Confidence 999999998 89999999999999999875443221 1111111 1122223333333 33444555533 3
Q ss_pred ceeeeEeeeccccCeeEEEEecCCeeeecCCcceEEEEEeeCCcccccccC
Q 047325 317 IHTCLSVLTGHTGPVKCLAVEEDRDSSSSTSSCAQRWIVYSGSLDKSDDDV 367 (368)
Q Consensus 317 ~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~w~l~sg~~D~~v~i~ 367 (368)
....+..+.+|..+|++++|+|++.+ |++|+.||.|++|
T Consensus 295 ~~~~~~~~~~h~~~v~~~~~s~~~~~------------l~s~~~dg~v~iw 333 (351)
T 3f3f_A 295 QVELLSEHDDHNGEVWSVSWNLTGTI------------LSSAGDDGKVRLW 333 (351)
T ss_dssp EEEEEEEECTTSSCEEEEEECSSSCC------------EEEEETTSCEEEE
T ss_pred cccEEEEEecccccEEEEEEcCCCCE------------EEEecCCCcEEEE
Confidence 34778888999999999999999994 4555555555554
No 76
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=5.4e-37 Score=299.76 Aligned_cols=286 Identities=19% Similarity=0.275 Sum_probs=233.7
Q ss_pred cccCCCceeeeccCcCCcEEEEEecCC--EEEEccCCCcEEEEcCCc--ceecccCCCCCeeEEEEe----CCEEEEEeC
Q 047325 29 ENLPQNGLIGSLVREEGHIYSLAASKD--LLYTGSDSKNIRVWKNLK--EFCGFKASSGLVKAIVIS----GEKIFTGHQ 100 (368)
Q Consensus 29 ~~~~~~~~~~~~~~h~~~i~~~~~~~~--~l~s~~~dg~i~iw~~~~--~~~~~~~~~~~v~~~~~~----~~~l~s~~~ 100 (368)
-+....+.+..+.+|.+.|.+++|+++ +|++|+.||+|++||+.+ .+..+.+|...|.+++|+ +.++++|+.
T Consensus 642 w~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~ 721 (1249)
T 3sfz_A 642 FKAETGEKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSN 721 (1249)
T ss_dssp EETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSCCEEEEEET
T ss_pred EECCCCCEEEEeccCCCCEEEEEEecCCCEEEEEeCCCeEEEEECCCCceEEEEcCCCCcEEEEEEecCCCceEEEEEeC
Confidence 345667788899999999999999855 999999999999999874 456788999999999997 348999999
Q ss_pred CCeEEEEeecCCCccccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcCCCCEEEEEeCCCcEEE
Q 047325 101 DGKIRVWKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCGLLYTASWDRTFKV 180 (368)
Q Consensus 101 dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i 180 (368)
||.|++||+.+++... .+.+|...|++++|+|+++++++++.||.|++
T Consensus 722 d~~v~vwd~~~~~~~~--------------------------------~~~~h~~~v~~~~~sp~~~~l~s~s~dg~v~v 769 (1249)
T 3sfz_A 722 DFFLKLWDLNQKECRN--------------------------------TMFGHTNSVNHCRFSPDDELLASCSADGTLRL 769 (1249)
T ss_dssp TSCEEEEETTSSSEEE--------------------------------EECCCSSCEEEEEECSSTTEEEEEESSSEEEE
T ss_pred CCeEEEEECCCcchhh--------------------------------eecCCCCCEEEEEEecCCCEEEEEECCCeEEE
Confidence 9999999998775322 23348899999999999999999999999999
Q ss_pred EEccCCeEEEEee-------------------------------------------------------cCCCceEEEEeC
Q 047325 181 WRISDSKCLESVS-------------------------------------------------------AHDDAVNSVVSS 205 (368)
Q Consensus 181 wd~~~~~~~~~~~-------------------------------------------------------~~~~~v~~~~~~ 205 (368)
||+.+++....+. +|...|.+++|+
T Consensus 770 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~s 849 (1249)
T 3sfz_A 770 WDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFS 849 (1249)
T ss_dssp EEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEETTEEEEEETTTCCEEEEEECSSSSCCCEEEEC
T ss_pred EeCCCCcccceecccccccccCCccccccceEEEEEECCCCCEEEEEcCCcEEEEEecCCCceeEEcCCCCCceEEEEEc
Confidence 9987765443321 567788999999
Q ss_pred CCC-eEEEEcCCCeEEEEEcCCCCCCcccccceeeccccccEEEEEEcCCCCEEEEecCCCcEEEEeCCCccccc-----
Q 047325 206 SEG-LIFTGSADGTVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSSSRSIVYCGSSDGLVNFWEREKQLSHG----- 279 (368)
Q Consensus 206 ~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~----- 279 (368)
|++ .+++++.||.|++||+... .....+.+|...|.+++|+|++++|++++.||.|++||+.+.....
T Consensus 850 p~~~~l~~~~~dg~v~vwd~~~~------~~~~~~~~h~~~v~~v~~spdg~~l~s~s~dg~v~vw~~~~~~~~~~~~~~ 923 (1249)
T 3sfz_A 850 PYDHLAVIALSQYCVELWNIDSR------LKVADCRGHLSWVHGVMFSPDGSSFLTASDDQTIRVWETKKVCKNSAIVLK 923 (1249)
T ss_dssp SSTTEEEEECSSSCEEEEETTTT------EEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEHHHHHSCCSSSEE
T ss_pred CCCCEEEEEeCCCeEEEEEcCCC------ceeeecCCCccceEEEEECCCCCEEEEEeCCCeEEEEEccccceeeeeccc
Confidence 999 9999999999999999865 3566778899999999999999999999999999999975321100
Q ss_pred ---------------------------------eeeeccceEEEEEEeCCCEEEEeeCCCeEEEEecCCCceeeeEeeec
Q 047325 280 ---------------------------------GVLKGHKLAVLCLAAAGKLVFSGSADKTICVWRRDGAIHTCLSVLTG 326 (368)
Q Consensus 280 ---------------------------------~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~ 326 (368)
...........+++|+++++++|+.||.|++|++.+. .....+.+
T Consensus 924 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~g~~~g~i~i~d~~~~--~~~~~~~~ 1001 (1249)
T 3sfz_A 924 QEIDVVFQENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNN--RVFSSGVG 1001 (1249)
T ss_dssp EEEEEEEETTEEEEEEEESSSSEEEEEESSCCEEEECCSCEEEEEECTTSSEEEEEETTSCCEEEETTTT--SCEEECCC
T ss_pred ceeeEEEcCCCcEEEEecCCcceEEEecCcceEEEcccCcEEEEEEcCCCCEEEEEcCCCCEEEEEcCCC--ceeeeccc
Confidence 0011123344677789999999999999999999876 56777889
Q ss_pred cccCeeEEEEecCCeeeecCC--cceEEEE
Q 047325 327 HTGPVKCLAVEEDRDSSSSTS--SCAQRWI 354 (368)
Q Consensus 327 h~~~v~~l~~~~~~~~~~~~~--~~~~~w~ 354 (368)
|...|++++|+|++..+++++ +.+++|.
T Consensus 1002 h~~~v~~l~~s~dg~~l~s~~~dg~i~vwd 1031 (1249)
T 3sfz_A 1002 HKKAVRHIQFTADGKTLISSSEDSVIQVWN 1031 (1249)
T ss_dssp CSSCCCCEEECSSSSCEEEECSSSBEEEEE
T ss_pred CCCceEEEEECCCCCEEEEEcCCCEEEEEE
Confidence 999999999999999777654 4466664
No 77
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=100.00 E-value=1.7e-36 Score=275.71 Aligned_cols=287 Identities=16% Similarity=0.171 Sum_probs=235.9
Q ss_pred ceeeeccCcCCc-EEEEEecC--C--EEEEccCCCcEEEEcCC----------cceecccCCCCCeeEEEEe--CCEEEE
Q 047325 35 GLIGSLVREEGH-IYSLAASK--D--LLYTGSDSKNIRVWKNL----------KEFCGFKASSGLVKAIVIS--GEKIFT 97 (368)
Q Consensus 35 ~~~~~~~~h~~~-i~~~~~~~--~--~l~s~~~dg~i~iw~~~----------~~~~~~~~~~~~v~~~~~~--~~~l~s 97 (368)
+.+..+.+|.+. |.+++|++ + +|++|+.||+|++||+. .....+..|...|.+++|+ +++|++
T Consensus 54 ~~~~~~~~h~~~~v~~~~~sp~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~ 133 (615)
T 1pgu_A 54 PPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCV 133 (615)
T ss_dssp CSEEEECTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEE
T ss_pred ccceEEecCCCceEEEEEECcCCCCCEEEEecCCCEEEEEeCCCCcccccccccccchhhcccccEEEEEEeCCCCEEEE
Confidence 678889999999 99999987 5 99999999999999985 2344677899999999998 789999
Q ss_pred EeCC----CeEEEEeecCCCccccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcCCCC-EEEEE
Q 047325 98 GHQD----GKIRVWKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCG-LLYTA 172 (368)
Q Consensus 98 ~~~d----g~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~ 172 (368)
++.+ +.|.+||. ++.. ..+.+|...|.+++|+|+++ .++++
T Consensus 134 ~~~~~~~~~~v~~~d~--~~~~--------------------------------~~~~~~~~~v~~~~~~~~~~~~l~~~ 179 (615)
T 1pgu_A 134 VGEGRDNFGVFISWDS--GNSL--------------------------------GEVSGHSQRINACHLKQSRPMRSMTV 179 (615)
T ss_dssp EECCSSCSEEEEETTT--CCEE--------------------------------EECCSCSSCEEEEEECSSSSCEEEEE
T ss_pred eccCCCCccEEEEEEC--CCcc--------------------------------eeeecCCccEEEEEECCCCCcEEEEE
Confidence 9988 78999982 2211 12234899999999999997 89999
Q ss_pred eCCCcEEEEEccCCeEEEEeecCCC---ceEEEEeCCC-C-eEEEEcCCCeEEEEEcCCCCCCcccccceee-c---ccc
Q 047325 173 SWDRTFKVWRISDSKCLESVSAHDD---AVNSVVSSSE-G-LIFTGSADGTVKVWKREQHGKGTKHSLAQTL-L---KQE 243 (368)
Q Consensus 173 ~~d~~i~iwd~~~~~~~~~~~~~~~---~v~~~~~~~~-~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~-~---~~~ 243 (368)
+.|+.|++||+.+++.+..+..|.. .|.+++|+|+ + +|++++.|+.|++||++... ....+ . .|.
T Consensus 180 ~~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~------~~~~~~~~~~~~~ 253 (615)
T 1pgu_A 180 GDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGE------FLKYIEDDQEPVQ 253 (615)
T ss_dssp ETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCC------EEEECCBTTBCCC
T ss_pred eCCCcEEEEeCCCcceeeeecccCCCCceEEEEEECCCCCCEEEEEeCCCeEEEEECCCCC------EeEEecccccccC
Confidence 9999999999999999999999999 9999999999 7 89999999999999998653 34444 4 788
Q ss_pred ccEEEEEEcCCCCEEEEecCCCcEEEEeCCCccccceeeecc----ceEEEEEE-eCCCEEEEeeCCCeEEEEecCCCce
Q 047325 244 CAVTALVVSSSRSIVYCGSSDGLVNFWEREKQLSHGGVLKGH----KLAVLCLA-AAGKLVFSGSADKTICVWRRDGAIH 318 (368)
Q Consensus 244 ~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~----~~~~~~~~-~~~~~l~~~~~dg~i~iw~~~~~~~ 318 (368)
..|.+++|+ ++++|++++.||.|++||+++++... .+..+ ...+.++. ++++++++++.||.|++||+...
T Consensus 254 ~~v~~~~~~-~~~~l~~~~~d~~i~~wd~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~i~~~d~~~~-- 329 (615)
T 1pgu_A 254 GGIFALSWL-DSQKFATVGADATIRVWDVTTSKCVQ-KWTLDKQQLGNQQVGVVATGNGRIISLSLDGTLNFYELGHD-- 329 (615)
T ss_dssp SCEEEEEES-SSSEEEEEETTSEEEEEETTTTEEEE-EEECCTTCGGGCEEEEEEEETTEEEEEETTSCEEEEETTEE--
T ss_pred CceEEEEEc-CCCEEEEEcCCCcEEEEECCCCcEEE-EEcCCCCcccCceeEEEeCCCCeEEEEECCCCEEEEECCCC--
Confidence 999999999 99999999999999999999766553 33333 23333333 48999999999999999998764
Q ss_pred eeeEeeeccccCeeEEEEecCCeeeecCCcceEEEE----------------------EeeCCcccccccC
Q 047325 319 TCLSVLTGHTGPVKCLAVEEDRDSSSSTSSCAQRWI----------------------VYSGSLDKSDDDV 367 (368)
Q Consensus 319 ~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~w~----------------------l~sg~~D~~v~i~ 367 (368)
..+..+.+|..+|++++| |+ ...++.++.+++|. +++++.|+.|++|
T Consensus 330 ~~~~~~~~~~~~v~~~~~-~~-l~~~~~dg~i~~w~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d~~i~~~ 398 (615)
T 1pgu_A 330 EVLKTISGHNKGITALTV-NP-LISGSYDGRIMEWSSSSMHQDHSNLIVSLDNSKAQEYSSISWDDTLKVN 398 (615)
T ss_dssp EEEEEECCCSSCEEEEET-TT-TEEEETTSCEEETTTTEEECCCCSCEEEEECCSTTCCEEEETTTEEEET
T ss_pred cEEEEEeCCCCCEEEEEe-cC-cEEECCCCeEEEEEchhhcCcccCceEEEEECCCcEEEEEeCCCCEEEE
Confidence 778888899999999999 88 33333445555543 5677788888877
No 78
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=100.00 E-value=9.1e-37 Score=260.94 Aligned_cols=248 Identities=21% Similarity=0.234 Sum_probs=203.1
Q ss_pred ceeeeccCcCCcEEEEEecCC--EEEEccCCCcEEEEcCCc----ceecccCCCCCeeEEEEe----CCEEEEEeCCCeE
Q 047325 35 GLIGSLVREEGHIYSLAASKD--LLYTGSDSKNIRVWKNLK----EFCGFKASSGLVKAIVIS----GEKIFTGHQDGKI 104 (368)
Q Consensus 35 ~~~~~~~~h~~~i~~~~~~~~--~l~s~~~dg~i~iw~~~~----~~~~~~~~~~~v~~~~~~----~~~l~s~~~dg~i 104 (368)
.++..+.+|.+.|++++|+++ +|++|+.||.|++||+.. ....+.+|...|.+++|+ +++|++++.||.|
T Consensus 2 ~~~~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~v 81 (379)
T 3jrp_A 2 SMVVIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKV 81 (379)
T ss_dssp ---CCEEECCCCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSCE
T ss_pred CccEEecCCcccEEEEEEcCCCCEEEEEECCCcEEEEecCCCcceeeeEecCCCCcEEEEEeCCCCCCCEEEEeccCCEE
Confidence 456778999999999999855 999999999999999862 345678999999999997 7899999999999
Q ss_pred EEEeecCCCccccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcCC--CCEEEEEeCCCcEEEEE
Q 047325 105 RVWKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQD--CGLLYTASWDRTFKVWR 182 (368)
Q Consensus 105 ~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~d~~i~iwd 182 (368)
++||+.+++... ...+.+|...|.+++|+|+ +.+|++++.|+.|++||
T Consensus 82 ~iwd~~~~~~~~------------------------------~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d 131 (379)
T 3jrp_A 82 LIWKEENGRWSQ------------------------------IAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVE 131 (379)
T ss_dssp EEEEEETTEEEE------------------------------EEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEE
T ss_pred EEEEcCCCceeE------------------------------eeeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEe
Confidence 999998764111 1223348899999999999 99999999999999999
Q ss_pred ccCCe--EEEEeecCCCceEEEEeCC-------------CC-eEEEEcCCCeEEEEEcCCCCCCcccccceeeccccccE
Q 047325 183 ISDSK--CLESVSAHDDAVNSVVSSS-------------EG-LIFTGSADGTVKVWKREQHGKGTKHSLAQTLLKQECAV 246 (368)
Q Consensus 183 ~~~~~--~~~~~~~~~~~v~~~~~~~-------------~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~i 246 (368)
+.++. ....+..|...|.+++|+| ++ .+++++.|+.|++||++.... .......+..|...|
T Consensus 132 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~--~~~~~~~~~~h~~~v 209 (379)
T 3jrp_A 132 FKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQ--TYVLESTLEGHSDWV 209 (379)
T ss_dssp CCTTSCCCEEEEECCTTCEEEEEECCCC----------CTTCEEEEEETTSCEEEEEEETTTT--EEEEEEEECCCSSCE
T ss_pred cCCCCceeeEEecCCCCceEEEEEcCccccccccccCCCCCCEEEEEeCCCeEEEEEecCCCc--ceeeEEEEecccCcE
Confidence 98873 4556778999999999999 46 999999999999999986532 223445677899999
Q ss_pred EEEEEcCC---CCEEEEecCCCcEEEEeCCCcccc----ceeeeccceEE--EEEEeCCCEEEEeeCCCeEEEEecC
Q 047325 247 TALVVSSS---RSIVYCGSSDGLVNFWEREKQLSH----GGVLKGHKLAV--LCLAAAGKLVFSGSADKTICVWRRD 314 (368)
Q Consensus 247 ~~~~~~~~---~~~l~~~~~dg~i~i~d~~~~~~~----~~~~~~~~~~~--~~~~~~~~~l~~~~~dg~i~iw~~~ 314 (368)
.+++|+|+ +++|++++.||.|++||+++.... ......|...+ ++++|++++|++++.||.|++|++.
T Consensus 210 ~~~~~sp~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~ 286 (379)
T 3jrp_A 210 RDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKEN 286 (379)
T ss_dssp EEEEECCCCSSSEEEEEEETTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEESSSSEEEEEEE
T ss_pred eEEEECCCCCCCCeEEEEeCCCEEEEEeCCCCCccceeeeeccccCCCcEEEEEEcCCCCEEEEecCCCcEEEEeCC
Confidence 99999999 899999999999999999875321 11222355555 4566789999999999999999987
No 79
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=100.00 E-value=6.4e-36 Score=257.54 Aligned_cols=248 Identities=17% Similarity=0.245 Sum_probs=205.5
Q ss_pred cCCCceeeeccC-cCCcEEEEEecCC--EEEEccCCCcEEEEcCCc--ceecccCCCCCeeEEEEeCCEEEEEeCCCeEE
Q 047325 31 LPQNGLIGSLVR-EEGHIYSLAASKD--LLYTGSDSKNIRVWKNLK--EFCGFKASSGLVKAIVISGEKIFTGHQDGKIR 105 (368)
Q Consensus 31 ~~~~~~~~~~~~-h~~~i~~~~~~~~--~l~s~~~dg~i~iw~~~~--~~~~~~~~~~~v~~~~~~~~~l~s~~~dg~i~ 105 (368)
+..+.....+.. |.+.|.+++|+++ +|++|+.||.|++||+.+ ....+..|...|.+++|++++|++|+.||.|+
T Consensus 120 ~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~ 199 (401)
T 4aez_A 120 ADSGSVSALAETDESTYVASVKWSHDGSFLSVGLGNGLVDIYDVESQTKLRTMAGHQARVGCLSWNRHVLSSGSRSGAIH 199 (401)
T ss_dssp TTTCCEEEEEECCTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEEETTEEEEEETTSEEE
T ss_pred CCCCcEeEeeecCCCCCEEEEEECCCCCEEEEECCCCeEEEEECcCCeEEEEecCCCCceEEEEECCCEEEEEcCCCCEE
Confidence 344555555544 8899999999755 999999999999999874 46678899999999999999999999999999
Q ss_pred EEeecCCCccccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcCCCCEEEEEeCCCcEEEEEccC
Q 047325 106 VWKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCGLLYTASWDRTFKVWRISD 185 (368)
Q Consensus 106 vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~ 185 (368)
+||++..... ...+.+|...|.+++|+|++++|++++.|+.|++||+++
T Consensus 200 i~d~~~~~~~-------------------------------~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~ 248 (401)
T 4aez_A 200 HHDVRIANHQ-------------------------------IGTLQGHSSEVCGLAWRSDGLQLASGGNDNVVQIWDARS 248 (401)
T ss_dssp EEETTSSSCE-------------------------------EEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTC
T ss_pred EEecccCcce-------------------------------eeEEcCCCCCeeEEEEcCCCCEEEEEeCCCeEEEccCCC
Confidence 9999854321 223445999999999999999999999999999999999
Q ss_pred CeEEEEeecCCCceEEEEeCCCC--eEEEEc--CCCeEEEEEcCCCCCCcccccceeeccccccEEEEEEcCCCCEEEE-
Q 047325 186 SKCLESVSAHDDAVNSVVSSSEG--LIFTGS--ADGTVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSSSRSIVYC- 260 (368)
Q Consensus 186 ~~~~~~~~~~~~~v~~~~~~~~~--~l~~~~--~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~- 260 (368)
++++..+..|...|.+++|+|++ .+++++ .|+.|++||++... ....+ .+...+.+++|+|+++++++
T Consensus 249 ~~~~~~~~~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~------~~~~~-~~~~~v~~~~~s~~~~~l~~~ 321 (401)
T 4aez_A 249 SIPKFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGA------RVNTV-DAGSQVTSLIWSPHSKEIMST 321 (401)
T ss_dssp SSEEEEECCCSSCCCEEEECTTSTTEEEEECCTTTCEEEEEETTTCC------EEEEE-ECSSCEEEEEECSSSSEEEEE
T ss_pred CCccEEecCCcceEEEEEECCCCCCEEEEecCCCCCEEEEEECCCCC------EEEEE-eCCCcEEEEEECCCCCeEEEE
Confidence 99999999999999999999977 666655 79999999998652 23333 35678999999999999999
Q ss_pred -ecCCCcEEEEeCCCccccc-eeeeccceEE--EEEEeCCCEEEEeeCCCeEEEEecCCC
Q 047325 261 -GSSDGLVNFWEREKQLSHG-GVLKGHKLAV--LCLAAAGKLVFSGSADKTICVWRRDGA 316 (368)
Q Consensus 261 -~~~dg~i~i~d~~~~~~~~-~~~~~~~~~~--~~~~~~~~~l~~~~~dg~i~iw~~~~~ 316 (368)
|+.||.|++||++++.... ..+.+|...+ ++++|++++|++++.||.|++|++.++
T Consensus 322 ~g~~dg~i~v~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~~~dg~i~iw~~~~~ 381 (401)
T 4aez_A 322 HGFPDNNLSIWSYSSSGLTKQVDIPAHDTRVLYSALSPDGRILSTAASDENLKFWRVYDG 381 (401)
T ss_dssp ECTTTCEEEEEEEETTEEEEEEEEECCSSCCCEEEECTTSSEEEEECTTSEEEEEECCC-
T ss_pred eecCCCcEEEEecCCccceeEEEecCCCCCEEEEEECCCCCEEEEEeCCCcEEEEECCCC
Confidence 5589999999998754332 3356777766 456678999999999999999999876
No 80
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4.8e-36 Score=281.14 Aligned_cols=315 Identities=11% Similarity=0.128 Sum_probs=213.2
Q ss_pred eccCcCCcEEEEEecCC---EEEEccCCCcEEEEcCCcc--eecccC------------------CCCCeeEEEEe--CC
Q 047325 39 SLVREEGHIYSLAASKD---LLYTGSDSKNIRVWKNLKE--FCGFKA------------------SSGLVKAIVIS--GE 93 (368)
Q Consensus 39 ~~~~h~~~i~~~~~~~~---~l~s~~~dg~i~iw~~~~~--~~~~~~------------------~~~~v~~~~~~--~~ 93 (368)
.+.+|.++|.+++|+++ .|++|+.||.| +||+... ...+.. |...|.+++|+ +.
T Consensus 146 ~~~~h~~~V~sl~~sp~~~~~l~~g~~dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~ 224 (902)
T 2oaj_A 146 FPAARLSPIVSIQWNPRDIGTVLISYEYVTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSL 224 (902)
T ss_dssp CSSSCCCCCCEEEEETTEEEEEEEECSSCEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSS
T ss_pred ccccCCCCeEEEEEccCCCCEEEEEeCCCcE-EEECCCCceEEEEecccCCcCCCcccccccccccCCCeEEEEEcCCCC
Confidence 45789999999999974 89999999999 9998753 333433 35789999998 78
Q ss_pred EEEEEeCCCeEEEEeecCCCccccccC-----C------------ccccceee-------------eecc-CCC----Cc
Q 047325 94 KIFTGHQDGKIRVWKISPKNQSVHKRA-----G------------TLPTLKDI-------------FKSS-IKP----SN 138 (368)
Q Consensus 94 ~l~s~~~dg~i~vw~~~~~~~~~~~~~-----~------------~~~~~~~~-------------~~~~-~~~----~~ 138 (368)
+|++|+.||+|++||+.+++....... . .......+ +... ... ..
T Consensus 225 ~lasgs~Dg~i~lWd~~~g~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~sg~~~~~~~~~~ 304 (902)
T 2oaj_A 225 HIITIHEDNSLVFWDANSGHMIMARTVFETEINVPQPDYIRDSSTNAAKISKVYWMCENNPEYTSLLISHKSISRGDNQS 304 (902)
T ss_dssp EEEEEETTCCEEEEETTTCCEEEEECSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTEEEEEEEEECSTTSSCCC
T ss_pred EEEEEECCCeEEEEECCCCcEEEEEeecccccCCCCCcCCCCCccccCCeeEEEEEecCCCCCCEEEEeCCCCCCCCCce
Confidence 999999999999999988765432110 0 00000000 0000 000 00
Q ss_pred eeEec-c--------------------cceeeee-ecCCCEeEEEEcC----------CCCEEEEEeCCCcEEEEEccCC
Q 047325 139 YIEVR-R--------------------HRTALWI-RHSDAVSCMSLDQ----------DCGLLYTASWDRTFKVWRISDS 186 (368)
Q Consensus 139 ~~~~~-~--------------------~~~~~~~-~~~~~v~~~~~~~----------~~~~l~~~~~d~~i~iwd~~~~ 186 (368)
..... . .....+. ++...|.++.+.+ +...+++++.|+.|++||+.++
T Consensus 305 v~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~sp~~~g~~d~~~l~~~s~dg~l~~~~~~~g 384 (902)
T 2oaj_A 305 LTMIDLGYTPRYSITSYEGMKNYYANPKQMKIFPLPTNVPIVNILPIPRQSPYFAGCHNPGLILLILGNGEIETMLYPSG 384 (902)
T ss_dssp EEEEEEEECCCGGGCCHHHHHHHHHSCSEEEEECCSSSSCEEEEEECCSSCSHHHHTBSCSEEEEEETTSCEEEEETTTC
T ss_pred EEEEecCCCCCccccchhhhhhhhcCccceEEEecCCCCceEEEEECCCCCCCcCCCCCceeEEEEcCCCcEEEEECCCC
Confidence 10000 0 0011111 3567788888765 2347889999999999999777
Q ss_pred eEEEE-----------------------------------------eecCCCceEEEEeCCCC-eEEEEcCCCeEEEEEc
Q 047325 187 KCLES-----------------------------------------VSAHDDAVNSVVSSSEG-LIFTGSADGTVKVWKR 224 (368)
Q Consensus 187 ~~~~~-----------------------------------------~~~~~~~v~~~~~~~~~-~l~~~~~dg~i~i~d~ 224 (368)
..... +.+|...+.+++|+|++ .|++|+.|++|++||+
T Consensus 385 ~~~~~~~~~~~~l~~~~~~v~~~~~s~~~~~~w~~~~~~~~~~~~~l~G~~~~v~sv~~spdg~~laSgs~DgtVrlWd~ 464 (902)
T 2oaj_A 385 IFTDKASLFPQNLSWLRPLATTSMAASVPNKLWLGALSAAQNKDYLLKGGVRTKRQKLPAEYGTAFITGHSNGSVRIYDA 464 (902)
T ss_dssp CEECCGGGSCGGGTTBTTBEEEEEEEEEEHHHHHHHHHTTBCCCCSCCCSBCCCCCCCCCSEEEEEEEEETTSEEEEEES
T ss_pred CcccccccCCCcccccCCCeeEEEEEEcCHHHHHHHHhcccCCCCcccCCcCCCCcccccccCcEEEEecCCCcEEEEEC
Confidence 54322 12333444555667888 9999999999999999
Q ss_pred CCCCCCcccccceee-----ccccccEEEEEEcCCCCEEEEecCCCcEEEEeCCCccc----------------------
Q 047325 225 EQHGKGTKHSLAQTL-----LKQECAVTALVVSSSRSIVYCGSSDGLVNFWEREKQLS---------------------- 277 (368)
Q Consensus 225 ~~~~~~~~~~~~~~~-----~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~---------------------- 277 (368)
..+...........+ .+|...|.+++|+|++++||+|+.||+|++||+.+++.
T Consensus 465 ~~g~~~~~~~~~~~l~~~~~~~h~~~V~svafspdg~~LAsgs~DgtV~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 544 (902)
T 2oaj_A 465 SHGDIQDNASFEVNLSRTLNKAKELAVDKISFAAETLELAVSIETGDVVLFKYEVNQFYSVENRPESGDLEMNFRRFSLN 544 (902)
T ss_dssp SCCTTTTTBCEEEEHHHHTTCSSSCCEEEEEEETTTTEEEEEETTSCEEEEEEEECCC---------------CCSCCGG
T ss_pred CCccccCCceEEeechhhcCCCCCCceeEEEecCCCCeEEEEecCcEEEEEEecCccccCccccCCCcccceeeeecccc
Confidence 875321000000011 26888999999999999999999999999999876521
Q ss_pred ----------------------cceeeeccceEE--EEEEeCCCEEEEeeCCCeEEEEecCCCceee---eEeee-cccc
Q 047325 278 ----------------------HGGVLKGHKLAV--LCLAAAGKLVFSGSADKTICVWRRDGAIHTC---LSVLT-GHTG 329 (368)
Q Consensus 278 ----------------------~~~~~~~~~~~~--~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~---~~~~~-~h~~ 329 (368)
+...+.+|...| ++++||| +||+|+.|++|++||+++..... +..+. +|..
T Consensus 545 ~~~~~~~~~~~~~~~~~~~g~~~~~~l~~h~~~V~svafSpdG-~lAsgs~D~tv~lwd~~~~~~~~~~~~~~~~~gh~~ 623 (902)
T 2oaj_A 545 NTNGVLVDVRDRAPTGVRQGFMPSTAVHANKGKTSAINNSNIG-FVGIAYAAGSLMLIDRRGPAIIYMENIREISGAQSA 623 (902)
T ss_dssp GSSCSEEECGGGCCTTCSEEEEEEEEECCCSCSEEEEEECBTS-EEEEEETTSEEEEEETTTTEEEEEEEGGGTCSSCCC
T ss_pred CCccccccccccCCCCCCCccceeEEEEcCCCcEEEEEecCCc-EEEEEeCCCcEEEEECCCCeEEEEeehhHhcccccc
Confidence 124455677766 5566799 99999999999999987763211 12343 8999
Q ss_pred CeeEEEEe-----cCC---eeeecCCcceEEEEEeeCCcccccccC
Q 047325 330 PVKCLAVE-----EDR---DSSSSTSSCAQRWIVYSGSLDKSDDDV 367 (368)
Q Consensus 330 ~v~~l~~~-----~~~---~~~~~~~~~~~~w~l~sg~~D~~v~i~ 367 (368)
.|++|+|+ ||| + .|++|+.|++||+|
T Consensus 624 ~V~sv~Fs~~~~~~Dg~~~~------------~l~sgs~D~tv~~w 657 (902)
T 2oaj_A 624 CVTCIEFVIMEYGDDGYSSI------------LMVCGTDMGEVITY 657 (902)
T ss_dssp CEEEEEEEEEECTTSSSEEE------------EEEEEETTSEEEEE
T ss_pred ceEEEEEEEEecCCCCCcce------------EEEEEecCCcEEEE
Confidence 99999999 885 6 35555555555555
No 81
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=100.00 E-value=2.1e-36 Score=263.33 Aligned_cols=247 Identities=22% Similarity=0.343 Sum_probs=211.9
Q ss_pred ccCCCceeeeccCcCCcEEEEEecCCEEEEccCCCcEEEEcCCc--ceecccCCCCCeeEEEEeCCEEEEEeCCCeEEEE
Q 047325 30 NLPQNGLIGSLVREEGHIYSLAASKDLLYTGSDSKNIRVWKNLK--EFCGFKASSGLVKAIVISGEKIFTGHQDGKIRVW 107 (368)
Q Consensus 30 ~~~~~~~~~~~~~h~~~i~~~~~~~~~l~s~~~dg~i~iw~~~~--~~~~~~~~~~~v~~~~~~~~~l~s~~~dg~i~vw 107 (368)
++...+.+..+.+|.+.|.++++++++|++|+.||+|++||+.+ ....+..|...|.+++|+++.+++|+.||.|++|
T Consensus 159 d~~~~~~~~~~~~h~~~v~~l~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~s~dg~i~vw 238 (435)
T 1p22_A 159 DKNTLECKRILTGHTGSVLCLQYDERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAVW 238 (435)
T ss_dssp ESSSCCEEEEECCCSSCEEEEECCSSEEEEEETTSCEEEEESSSCCEEEEECCCCSCEEEEECCTTEEEEEETTSCEEEE
T ss_pred eCCCCeEEEEEcCCCCcEEEEEECCCEEEEEcCCCeEEEEECCCCcEEEEEcCCCCcEEEEEEcCCEEEEeeCCCcEEEE
Confidence 35567778889999999999999999999999999999999874 4567889999999999999999999999999999
Q ss_pred eecCCCccccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcCCCCEEEEEeCCCcEEEEEccCCe
Q 047325 108 KISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCGLLYTASWDRTFKVWRISDSK 187 (368)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~ 187 (368)
|+.++..... ...+.+|...|.++++ +++++++|+.||.|++||+++++
T Consensus 239 d~~~~~~~~~-----------------------------~~~~~~~~~~v~~~~~--~~~~l~s~~~dg~i~vwd~~~~~ 287 (435)
T 1p22_A 239 DMASPTDITL-----------------------------RRVLVGHRAAVNVVDF--DDKYIVSASGDRTIKVWNTSTCE 287 (435)
T ss_dssp ECSSSSCCEE-----------------------------EEEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEETTTCC
T ss_pred eCCCCCCcee-----------------------------eeEecCCCCcEEEEEe--CCCEEEEEeCCCeEEEEECCcCc
Confidence 9987653211 1223458999999999 67899999999999999999999
Q ss_pred EEEEeecCCCceEEEEeCCCCeEEEEcCCCeEEEEEcCCCCCCcccccceeeccccccEEEEEEcCCCCEEEEecCCCcE
Q 047325 188 CLESVSAHDDAVNSVVSSSEGLIFTGSADGTVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSSSRSIVYCGSSDGLV 267 (368)
Q Consensus 188 ~~~~~~~~~~~v~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i 267 (368)
.+..+.+|...|.++.+. +..+++|+.||.|++||++++ .....+..|...|.+++| ++++|++|+.||.|
T Consensus 288 ~~~~~~~~~~~v~~~~~~-~~~l~~g~~dg~i~iwd~~~~------~~~~~~~~h~~~v~~~~~--~~~~l~sg~~dg~i 358 (435)
T 1p22_A 288 FVRTLNGHKRGIACLQYR-DRLVVSGSSDNTIRLWDIECG------ACLRVLEGHEELVRCIRF--DNKRIVSGAYDGKI 358 (435)
T ss_dssp EEEEEECCSSCEEEEEEE-TTEEEEEETTSCEEEEETTTC------CEEEEECCCSSCEEEEEC--CSSEEEEEETTSCE
T ss_pred EEEEEcCCCCcEEEEEeC-CCEEEEEeCCCeEEEEECCCC------CEEEEEeCCcCcEEEEEe--cCCEEEEEeCCCcE
Confidence 999999999999999994 349999999999999999875 356677889999999999 78899999999999
Q ss_pred EEEeCCCccc--------cceeeeccceEEEEEEeCCCEEEEeeCCCeEEEEecCCC
Q 047325 268 NFWEREKQLS--------HGGVLKGHKLAVLCLAAAGKLVFSGSADKTICVWRRDGA 316 (368)
Q Consensus 268 ~i~d~~~~~~--------~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~ 316 (368)
++||+++... ....+.+|...+.++.+++.+|++|+.||.|++||+...
T Consensus 359 ~vwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~s~Dg~i~iwd~~~~ 415 (435)
T 1p22_A 359 KVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQFDEFQIVSSSHDDTILIWDFLND 415 (435)
T ss_dssp EEEEHHHHTSTTSCTTTTEEEEECCCSSCCCCEEECSSCEEECCSSSEEEEEC----
T ss_pred EEEECCCCCCccccccchheeeccCCCCCeEEEEeCCCEEEEEeCCCEEEEEECCCC
Confidence 9999875541 335667899999999999999999999999999999765
No 82
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.4e-36 Score=258.37 Aligned_cols=248 Identities=18% Similarity=0.261 Sum_probs=199.0
Q ss_pred eecccCCCCCeeEEEEe--CCEEEEEeCCCeEEEEeecCCCccccccCCccccceeeeeccCCCCceeEecccceeeeee
Q 047325 75 FCGFKASSGLVKAIVIS--GEKIFTGHQDGKIRVWKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIR 152 (368)
Q Consensus 75 ~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (368)
...+.+|...|.+++|+ +++|++|+.||.|++||+...... ....+.+
T Consensus 4 ~~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~------------------------------~~~~~~~ 53 (379)
T 3jrp_A 4 VVIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHK------------------------------LIDTLTG 53 (379)
T ss_dssp -CCEEECCCCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEE------------------------------EEEEECC
T ss_pred cEEecCCcccEEEEEEcCCCCEEEEEECCCcEEEEecCCCcce------------------------------eeeEecC
Confidence 45678999999999998 789999999999999999743211 1123445
Q ss_pred cCCCEeEEEEcCC--CCEEEEEeCCCcEEEEEccCCe--EEEEeecCCCceEEEEeCCC--C-eEEEEcCCCeEEEEEcC
Q 047325 153 HSDAVSCMSLDQD--CGLLYTASWDRTFKVWRISDSK--CLESVSAHDDAVNSVVSSSE--G-LIFTGSADGTVKVWKRE 225 (368)
Q Consensus 153 ~~~~v~~~~~~~~--~~~l~~~~~d~~i~iwd~~~~~--~~~~~~~~~~~v~~~~~~~~--~-~l~~~~~dg~i~i~d~~ 225 (368)
|...|++++|+++ +++|++++.||.|++||+.+++ .+..+..|...|.+++|+|+ + .+++++.|+.|++||++
T Consensus 54 h~~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~ 133 (379)
T 3jrp_A 54 HEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFK 133 (379)
T ss_dssp CSSCEEEEEECCGGGCSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECC
T ss_pred CCCcEEEEEeCCCCCCCEEEEeccCCEEEEEEcCCCceeEeeeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecC
Confidence 9999999999987 8999999999999999999987 77788889999999999998 7 99999999999999998
Q ss_pred CCCCCcccccceeeccccccEEEEEEcC-------------CCCEEEEecCCCcEEEEeCCCccc---cceeeeccceEE
Q 047325 226 QHGKGTKHSLAQTLLKQECAVTALVVSS-------------SRSIVYCGSSDGLVNFWEREKQLS---HGGVLKGHKLAV 289 (368)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~-------------~~~~l~~~~~dg~i~i~d~~~~~~---~~~~~~~~~~~~ 289 (368)
.... .....+..|...|.+++|+| ++++|++++.||.|++||+++... ....+.+|...+
T Consensus 134 ~~~~----~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~~v 209 (379)
T 3jrp_A 134 ENGT----TSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWV 209 (379)
T ss_dssp TTSC----CCEEEEECCTTCEEEEEECCCC----------CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCE
T ss_pred CCCc----eeeEEecCCCCceEEEEEcCccccccccccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEEecccCcE
Confidence 6532 23345567889999999999 699999999999999999986543 234556677777
Q ss_pred EE--EEeC---CCEEEEeeCCCeEEEEecCCCce---eeeEeeeccccCeeEEEEecCCeeeecC--CcceEEEEEe
Q 047325 290 LC--LAAA---GKLVFSGSADKTICVWRRDGAIH---TCLSVLTGHTGPVKCLAVEEDRDSSSST--SSCAQRWIVY 356 (368)
Q Consensus 290 ~~--~~~~---~~~l~~~~~dg~i~iw~~~~~~~---~~~~~~~~h~~~v~~l~~~~~~~~~~~~--~~~~~~w~l~ 356 (368)
.+ ++|+ +++|++++.||.|++||++.... ..+.....|...|++++|+|++.+++++ ++.+++|.+.
T Consensus 210 ~~~~~sp~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~ 286 (379)
T 3jrp_A 210 RDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKEN 286 (379)
T ss_dssp EEEEECCCCSSSEEEEEEETTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEESSSSEEEEEEE
T ss_pred eEEEECCCCCCCCeEEEEeCCCEEEEEeCCCCCccceeeeeccccCCCcEEEEEEcCCCCEEEEecCCCcEEEEeCC
Confidence 55 4567 88999999999999999987532 2333334588999999999999965543 3445555554
No 83
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=100.00 E-value=6.2e-36 Score=271.95 Aligned_cols=161 Identities=15% Similarity=0.171 Sum_probs=141.9
Q ss_pred CceeeeccCcCCcEEEEEecCC--EEEEccCC----CcEEEEcCCcceecccCCCCCeeEEEEe--CC-EEEEEeCCCeE
Q 047325 34 NGLIGSLVREEGHIYSLAASKD--LLYTGSDS----KNIRVWKNLKEFCGFKASSGLVKAIVIS--GE-KIFTGHQDGKI 104 (368)
Q Consensus 34 ~~~~~~~~~h~~~i~~~~~~~~--~l~s~~~d----g~i~iw~~~~~~~~~~~~~~~v~~~~~~--~~-~l~s~~~dg~i 104 (368)
...+..+.+|.+.|.+++|+++ +|++++.| +.|++||..+....+..|...|.+++|+ +. .+++++.||.|
T Consensus 106 ~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~v 185 (615)
T 1pgu_A 106 VNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWDSGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSV 185 (615)
T ss_dssp EEEEEEEECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETTTCCEEEECCSCSSCEEEEEECSSSSCEEEEEETTTEE
T ss_pred ccccchhhcccccEEEEEEeCCCCEEEEeccCCCCccEEEEEECCCcceeeecCCccEEEEEECCCCCcEEEEEeCCCcE
Confidence 3667788899999999999866 89999888 7999999888888899999999999998 43 89999999999
Q ss_pred EEEeecCCCccccccCCccccceeeeeccCCCCceeEecccceeeeeecCC---CEeEEEEcCC-CCEEEEEeCCCcEEE
Q 047325 105 RVWKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSD---AVSCMSLDQD-CGLLYTASWDRTFKV 180 (368)
Q Consensus 105 ~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~v~~~~~~~~-~~~l~~~~~d~~i~i 180 (368)
++||+.+.+... .+.+|.. .|.+++|+|+ +++|++++.|+.|++
T Consensus 186 ~vwd~~~~~~~~--------------------------------~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~v 233 (615)
T 1pgu_A 186 VFYQGPPFKFSA--------------------------------SDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISC 233 (615)
T ss_dssp EEEETTTBEEEE--------------------------------EECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEE
T ss_pred EEEeCCCcceee--------------------------------eecccCCCCceEEEEEECCCCCCEEEEEeCCCeEEE
Confidence 999987654322 2233777 9999999999 999999999999999
Q ss_pred EEccCCeEEEEe-e---cCCCceEEEEeCCCC-eEEEEcCCCeEEEEEcCCC
Q 047325 181 WRISDSKCLESV-S---AHDDAVNSVVSSSEG-LIFTGSADGTVKVWKREQH 227 (368)
Q Consensus 181 wd~~~~~~~~~~-~---~~~~~v~~~~~~~~~-~l~~~~~dg~i~i~d~~~~ 227 (368)
||+.+++.+..+ . .|...|.+++|+ ++ .|++++.|+.|++||++..
T Consensus 234 wd~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~~wd~~~~ 284 (615)
T 1pgu_A 234 FDGKSGEFLKYIEDDQEPVQGGIFALSWL-DSQKFATVGADATIRVWDVTTS 284 (615)
T ss_dssp EETTTCCEEEECCBTTBCCCSCEEEEEES-SSSEEEEEETTSEEEEEETTTT
T ss_pred EECCCCCEeEEecccccccCCceEEEEEc-CCCEEEEEcCCCcEEEEECCCC
Confidence 999999999999 6 899999999999 77 9999999999999999754
No 84
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.1e-36 Score=268.11 Aligned_cols=229 Identities=13% Similarity=0.086 Sum_probs=177.4
Q ss_pred eCCEEEEEeCCCeEEEEeecCCCccccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcCC-----
Q 047325 91 SGEKIFTGHQDGKIRVWKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQD----- 165 (368)
Q Consensus 91 ~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~----- 165 (368)
.+..+++++.|++|++|++.+++.... ....+.+|.+.|.+++|+|+
T Consensus 172 ~~~~laS~s~D~tI~iWd~~~~~~~~~----------------------------~~~~l~~~~~~V~~v~wsp~~~~~~ 223 (524)
T 2j04_B 172 HLEMFDKEKHSSCIQIFKMNTSTLHCV----------------------------KVQTIVHSFGEVWDLKWHEGCHAPH 223 (524)
T ss_dssp ----------CEEEEEEEEETTTCCEE----------------------------EEEEEEECCCSEEEEEECSSCCCSS
T ss_pred hhhhhccCCCCceEEEEEccCCCCCce----------------------------EEEEEEecCCcEEEEEECCCCCCCC
Confidence 366789999999999999987652110 01123347889999999996
Q ss_pred -CCEEEEEeCCCcEEEEEccCCeE-----------EEEeecCCCceEEEEeCCCCeEEEEcCCCeEEEEEcCCCCCCccc
Q 047325 166 -CGLLYTASWDRTFKVWRISDSKC-----------LESVSAHDDAVNSVVSSSEGLIFTGSADGTVKVWKREQHGKGTKH 233 (368)
Q Consensus 166 -~~~l~~~~~d~~i~iwd~~~~~~-----------~~~~~~~~~~v~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~ 233 (368)
+.+|++++.||+|++||+.+++. ...+.+|...|.+++|++++.|++|+.||+|++||++....
T Consensus 224 ~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~p~~~l~~h~~~v~sv~~s~~~~lasgs~DgtV~lWD~~~~~~---- 299 (524)
T 2j04_B 224 LVGCLSFVSQEGTINFLEIIDNATDVHVFKMCEKPSLTLSLADSLITTFDFLSPTTVVCGFKNGFVAEFDLTDPEV---- 299 (524)
T ss_dssp SSCEEEEEETTSCEEEEECCCCSSSSSEEECCCSCSEEECCTTTCEEEEEESSSSEEEEEETTSEEEEEETTBCSS----
T ss_pred CCceEEEEecCCeEEEEEcCCCccccccceeecCceEEEEcCCCCEEEEEecCCCeEEEEeCCCEEEEEECCCCCC----
Confidence 57999999999999999976632 24677899999999999888999999999999999986422
Q ss_pred ccceeeccccccEEEE--EEcCCC-CEEEEecCCCcEEEEeCCCccccceeeeccc----eEEEEEEeCCCEEEEeeCCC
Q 047325 234 SLAQTLLKQECAVTAL--VVSSSR-SIVYCGSSDGLVNFWEREKQLSHGGVLKGHK----LAVLCLAAAGKLVFSGSADK 306 (368)
Q Consensus 234 ~~~~~~~~~~~~i~~~--~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~----~~~~~~~~~~~~l~~~~~dg 306 (368)
+...+..|...|.++ +|+|++ ++|++++.|++|++||+++..... .+.+|. ...++++|+++.+++++.|+
T Consensus 300 -~~~~~~~H~~~V~sv~~~~s~~g~~~laS~S~D~tvklWD~~~~~~~~-~~~~~~~~~~v~~v~fsp~~~~l~s~~~d~ 377 (524)
T 2j04_B 300 -PSFYDQVHDSYILSVSTAYSDFEDTVVSTVAVDGYFYIFNPKDIATTK-TTVSRFRGSNLVPVVYCPQIYSYIYSDGAS 377 (524)
T ss_dssp -CSEEEECSSSCEEEEEEECCTTSCCEEEEEETTSEEEEECGGGHHHHC-EEEEECSCCSCCCEEEETTTTEEEEECSSS
T ss_pred -ceEEeecccccEEEEEEEcCCCCCeEEEEeccCCeEEEEECCCCCccc-ccccccccCcccceEeCCCcCeEEEeCCCC
Confidence 344577899999999 578887 899999999999999999866543 333443 23478899999999999999
Q ss_pred eEEEEecCCCceeeeEeeeccccCeeEEEEecCCeeeecCCcceEEEEEeeCCcccccccC
Q 047325 307 TICVWRRDGAIHTCLSVLTGHTGPVKCLAVEEDRDSSSSTSSCAQRWIVYSGSLDKSDDDV 367 (368)
Q Consensus 307 ~i~iw~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~w~l~sg~~D~~v~i~ 367 (368)
+|++||++.. .++..+.+|.++|++|+|+|+++ .|++|+.|++|++|
T Consensus 378 tv~lwd~~~~--~~~~~l~gH~~~V~sva~Sp~g~------------~l~Sgs~Dgtv~lw 424 (524)
T 2j04_B 378 SLRAVPSRAA--FAVHPLVSRETTITAIGVSRLHP------------MVLAGSADGSLIIT 424 (524)
T ss_dssp EEEEEETTCT--TCCEEEEECSSCEEEEECCSSCC------------BCEEEETTTEEECC
T ss_pred cEEEEECccc--ccceeeecCCCceEEEEeCCCCC------------eEEEEECCCEEEEE
Confidence 9999999876 55567888999999999999999 57778888888777
No 85
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=100.00 E-value=5.1e-35 Score=253.38 Aligned_cols=266 Identities=19% Similarity=0.278 Sum_probs=204.3
Q ss_pred cCCCceeee--ccCcCCcEEEEEecCC--EEEEccCCCcEEEEcCCc--ceecccCCCCCeeEEEEeCCEEEEEeCCCeE
Q 047325 31 LPQNGLIGS--LVREEGHIYSLAASKD--LLYTGSDSKNIRVWKNLK--EFCGFKASSGLVKAIVISGEKIFTGHQDGKI 104 (368)
Q Consensus 31 ~~~~~~~~~--~~~h~~~i~~~~~~~~--~l~s~~~dg~i~iw~~~~--~~~~~~~~~~~v~~~~~~~~~l~s~~~dg~i 104 (368)
...++.+.. +.+|.+.|++|+|+++ +|++|+.||+|++||+.+ .+..+.+|...+.++.+++..|++|+.|+.+
T Consensus 132 ~~tg~~~~~~~~~~~~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~~~~~~~~~~h~~~v~~~s~~~~~l~sgs~d~~i 211 (420)
T 4gga_A 132 ASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWNSYILSSGSRSGHI 211 (420)
T ss_dssp TTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTEEEEEETTSEE
T ss_pred CCCCCEEEEEEecCCCCcEEEEEECCCCCEEEEEECCCeEEEEEcCCCcEEEEEeCCCCceEEEeeCCCEEEEEeCCCce
Confidence 344555554 4577888999999855 999999999999999874 4667889999999999999999999999999
Q ss_pred EEEeecCCCccccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcCCCCEEEEEeCCCcEEEEEcc
Q 047325 105 RVWKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCGLLYTASWDRTFKVWRIS 184 (368)
Q Consensus 105 ~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~ 184 (368)
++||....... ...+.+|...+..+.++|+++++++++.|+.+++||..
T Consensus 212 ~~~d~~~~~~~-------------------------------~~~~~~h~~~~~~~~~~~~g~~l~s~~~D~~v~i~~~~ 260 (420)
T 4gga_A 212 HHHDVRVAEHH-------------------------------VATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSA 260 (420)
T ss_dssp EEEETTSSSCE-------------------------------EEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESS
T ss_pred eEeeeccccee-------------------------------eEEecccccceeeeeecCCCCeeeeeeccccceEEeec
Confidence 99998765421 22345599999999999999999999999999999998
Q ss_pred CCe----EEEEeecCCCceEEEEeCCCC--eEEE--EcCCCeEEEEEcCCCCCCcccccceeeccccccEEEEEEcCCCC
Q 047325 185 DSK----CLESVSAHDDAVNSVVSSSEG--LIFT--GSADGTVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSSSRS 256 (368)
Q Consensus 185 ~~~----~~~~~~~~~~~v~~~~~~~~~--~l~~--~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 256 (368)
+++ .+.....|...|.+++|+|.+ .+++ |+.|+.|++||++++. ....+ .+...+.++.|+|+++
T Consensus 261 ~~~~~~~~~~~~~~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~~------~~~~~-~~~~~v~~~~~~~~~~ 333 (420)
T 4gga_A 261 PGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGA------CLSAV-DAHSQVCSILWSPHYK 333 (420)
T ss_dssp CCSSCSCCSEEECCCSSCEEEEEECTTCTTEEEEEECTTTCEEEEEETTTTE------EEEEE-ECSSCEEEEEEETTTT
T ss_pred cccccceeeeeecccCCceeeeeeCCCcccEEEEEeecCCCEEEEEeCCccc------cceee-ccccceeeeeecCCCC
Confidence 765 355677889999999999987 5544 4679999999998762 23333 3456789999999999
Q ss_pred EEEEec--CCCcEEEEeCCCccccceeeeccceEEEEE--EeCCCEEEEeeCCCeEEEEecCCCceeeeEeeeccccCee
Q 047325 257 IVYCGS--SDGLVNFWEREKQLSHGGVLKGHKLAVLCL--AAAGKLVFSGSADKTICVWRRDGAIHTCLSVLTGHTGPVK 332 (368)
Q Consensus 257 ~l~~~~--~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~--~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~ 332 (368)
.+++++ .|+.|++||++++... ..+.+|...|.++ +|++++|++|+.|++|++||+... .+......+...+.
T Consensus 334 ~lv~~sg~~d~~I~iwd~~~~~~v-~~l~gH~~~V~~l~~spdg~~l~S~s~D~tvriWdv~~~--~~~~~~~~~~~~~~ 410 (420)
T 4gga_A 334 ELISGHGFAQNQLVIWKYPTMAKV-AELKGHTSRVLSLTMSPDGATVASAAADETLRLWRCFEL--DPARRREREKASAA 410 (420)
T ss_dssp EEEEEECTTTCCEEEEETTTCCEE-EEECCCSSCEEEEEECTTSSCEEEEETTTEEEEECCSCS--SCC-----------
T ss_pred eEEEEEecCCCEEEEEECCCCcEE-EEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEECCCC--CccchhhhccCCcc
Confidence 888754 7999999999987665 5678899888655 568999999999999999998654 23334444444444
Q ss_pred EEEEe
Q 047325 333 CLAVE 337 (368)
Q Consensus 333 ~l~~~ 337 (368)
...|.
T Consensus 411 ~~s~~ 415 (420)
T 4gga_A 411 KSSLI 415 (420)
T ss_dssp -----
T ss_pred ccccC
Confidence 43443
No 86
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=100.00 E-value=2.7e-35 Score=270.87 Aligned_cols=244 Identities=23% Similarity=0.387 Sum_probs=196.7
Q ss_pred CceeeeccCcCCcEEEEEecCC--EEEEccCCCcEEEEcCCcc--eecccCCCCCeeEEEEe--CCEEEEEeCCCeEEEE
Q 047325 34 NGLIGSLVREEGHIYSLAASKD--LLYTGSDSKNIRVWKNLKE--FCGFKASSGLVKAIVIS--GEKIFTGHQDGKIRVW 107 (368)
Q Consensus 34 ~~~~~~~~~h~~~i~~~~~~~~--~l~s~~~dg~i~iw~~~~~--~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~vw 107 (368)
......+.+|.+.|.+++|+++ +|++|+.||+|++||+.+. ...+.+|...|.+++|+ +++|++|+.|++|++|
T Consensus 420 ~~~~~~~~~h~~~v~~v~~s~~g~~l~sgs~Dg~v~vwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iw 499 (694)
T 3dm0_A 420 GVAQRRLTGHSHFVEDVVLSSDGQFALSGSWDGELRLWDLAAGVSTRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLW 499 (694)
T ss_dssp CEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEE
T ss_pred ccccceecCCCCcEEEEEECCCCCEEEEEeCCCcEEEEECCCCcceeEEeCCCCCEEEEEEeCCCCEEEEEeCCCEEEEE
Confidence 3445678999999999999855 9999999999999998754 55788999999999998 7899999999999999
Q ss_pred eecCCCccccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcCCC--CEEEEEeCCCcEEEEEccC
Q 047325 108 KISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDC--GLLYTASWDRTFKVWRISD 185 (368)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~--~~l~~~~~d~~i~iwd~~~ 185 (368)
|............ ..+|...|.+++|+|++ ..+++++.|+.|++||+++
T Consensus 500 d~~~~~~~~~~~~-----------------------------~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~vwd~~~ 550 (694)
T 3dm0_A 500 NTLGECKYTISEG-----------------------------GEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSN 550 (694)
T ss_dssp CTTSCEEEEECSS-----------------------------TTSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTT
T ss_pred ECCCCcceeeccC-----------------------------CCCCCCcEEEEEEeCCCCcceEEEEeCCCeEEEEECCC
Confidence 9754321111100 11388999999999986 5899999999999999999
Q ss_pred CeEEEEeecCCCceEEEEeCCCC-eEEEEcCCCeEEEEEcCCCCCCcccccceeeccccccEEEEEEcCCCCEEEEecCC
Q 047325 186 SKCLESVSAHDDAVNSVVSSSEG-LIFTGSADGTVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSSSRSIVYCGSSD 264 (368)
Q Consensus 186 ~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d 264 (368)
++....+.+|...|.+++|+|++ +|++++.||.|++||++... ....+ .+...+.+++|+|++.+|++++ +
T Consensus 551 ~~~~~~~~~h~~~v~~v~~spdg~~l~sg~~Dg~i~iwd~~~~~------~~~~~-~~~~~v~~~~~sp~~~~l~~~~-~ 622 (694)
T 3dm0_A 551 CKLRSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGK------KLYSL-EANSVIHALCFSPNRYWLCAAT-E 622 (694)
T ss_dssp CCEEEEECCCSSCEEEEEECTTSSEEEEEETTSBCEEEETTTTE------EEECC-BCSSCEEEEEECSSSSEEEEEE-T
T ss_pred CcEEEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCc------eEEEe-cCCCcEEEEEEcCCCcEEEEEc-C
Confidence 99999999999999999999999 99999999999999998652 22333 3456799999999998887765 5
Q ss_pred CcEEEEeCCCccccceeee------------------ccc--eEEEEEEeCCCEEEEeeCCCeEEEEecC
Q 047325 265 GLVNFWEREKQLSHGGVLK------------------GHK--LAVLCLAAAGKLVFSGSADKTICVWRRD 314 (368)
Q Consensus 265 g~i~i~d~~~~~~~~~~~~------------------~~~--~~~~~~~~~~~~l~~~~~dg~i~iw~~~ 314 (368)
+.|++||++++........ .+. ...++++|++++|++|+.||.|++|++.
T Consensus 623 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~spdg~~l~sgs~Dg~i~iW~i~ 692 (694)
T 3dm0_A 623 HGIKIWDLESKSIVEDLKVDLKAEAEKADNSGPAATKRKVIYCTSLNWSADGSTLFSGYTDGVIRVWGIG 692 (694)
T ss_dssp TEEEEEETTTTEEEEEECCCCC----------------CCCCEEEEEECTTSSEEEEEETTSEEEEEEC-
T ss_pred CCEEEEECCCCCChhhhccccccccccccccccccCCceeEEeeeEEEcCCCCEEEEEcCCCeEEEEecc
Confidence 6699999987654322110 011 1235677899999999999999999875
No 87
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=100.00 E-value=8.3e-37 Score=261.13 Aligned_cols=236 Identities=11% Similarity=0.084 Sum_probs=184.0
Q ss_pred ccCCCCCeeEEEEe--CCEEEEEeCCCeEEEEeecCCCccccccCCccccceeeeeccCCCCceeEecccceeeeeecCC
Q 047325 78 FKASSGLVKAIVIS--GEKIFTGHQDGKIRVWKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSD 155 (368)
Q Consensus 78 ~~~~~~~v~~~~~~--~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (368)
++.+.++|.+++|+ +++|++|+.||.|++||+.++.... ...+.+|..
T Consensus 7 ~~~~~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~~~~------------------------------~~~~~~h~~ 56 (377)
T 3dwl_C 7 LHILPKPSYEHAFNSQRTEFVTTTATNQVELYEQDGNGWKH------------------------------ARTFSDHDK 56 (377)
T ss_dssp EEECSSCCSCCEECSSSSEEECCCSSSCBCEEEEETTEEEE------------------------------CCCBCCCSS
T ss_pred EecCCCcEEEEEECCCCCEEEEecCCCEEEEEEccCCceEE------------------------------EEEEecCCc
Confidence 45567899999998 7899999999999999998763111 112234999
Q ss_pred CEeEEEEcCCCCEEEEEeCCCcEEEEEccCCe---EEEEeecCCCceEEEEeCCCC-eEEEEcCCCeEEEEEcCCCCCCc
Q 047325 156 AVSCMSLDQDCGLLYTASWDRTFKVWRISDSK---CLESVSAHDDAVNSVVSSSEG-LIFTGSADGTVKVWKREQHGKGT 231 (368)
Q Consensus 156 ~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~---~~~~~~~~~~~v~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~ 231 (368)
.|.+++|+|++++|++++.|+.|++||+.+++ ....+..|...|.+++|+|++ .|++++.|+.|++||++....
T Consensus 57 ~v~~~~~s~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~-- 134 (377)
T 3dwl_C 57 IVTCVDWAPKSNRIVTCSQDRNAYVYEKRPDGTWKQTLVLLRLNRAATFVRWSPNEDKFAVGSGARVISVCYFEQEND-- 134 (377)
T ss_dssp CEEEEEECTTTCCEEEEETTSSEEEC------CCCCEEECCCCSSCEEEEECCTTSSCCEEEESSSCEEECCC-------
T ss_pred eEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCCceeeeeEecccCCceEEEEECCCCCEEEEEecCCeEEEEEECCccc--
Confidence 99999999999999999999999999999877 677788899999999999999 999999999999999986521
Q ss_pred ccccceeecc-ccccEEEEEEcCCCCEEEEecCCCcEEEEeCCCcc-----------------ccceeeeccceEEE--E
Q 047325 232 KHSLAQTLLK-QECAVTALVVSSSRSIVYCGSSDGLVNFWEREKQL-----------------SHGGVLKGHKLAVL--C 291 (368)
Q Consensus 232 ~~~~~~~~~~-~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~-----------------~~~~~~~~~~~~~~--~ 291 (368)
......+.. |...|.+++|+|++++|++++.|+.|++||++... .....+ +|...+. +
T Consensus 135 -~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~ 212 (377)
T 3dwl_C 135 -WWVSKHLKRPLRSTILSLDWHPNNVLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSGGWVHAVG 212 (377)
T ss_dssp -CCCCEEECSSCCSCEEEEEECTTSSEEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCSSSEEEEE
T ss_pred -ceeeeEeecccCCCeEEEEEcCCCCEEEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcc-cCCceEEEEE
Confidence 113455555 89999999999999999999999999999985211 111222 6776664 4
Q ss_pred EEeCCCEEEEeeCCCeEEEEecCCCce--eeeEeeeccccCeeEEEEecCCeeeecCC
Q 047325 292 LAAAGKLVFSGSADKTICVWRRDGAIH--TCLSVLTGHTGPVKCLAVEEDRDSSSSTS 347 (368)
Q Consensus 292 ~~~~~~~l~~~~~dg~i~iw~~~~~~~--~~~~~~~~h~~~v~~l~~~~~~~~~~~~~ 347 (368)
++|++++|++++.||.|++||+.+... ..+..+.+|..+|++++|+|++.++++++
T Consensus 213 ~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~ 270 (377)
T 3dwl_C 213 FSPSGNALAYAGHDSSVTIAYPSAPEQPPRALITVKLSQLPLRSLLWANESAIVAAGY 270 (377)
T ss_dssp ECTTSSCEEEEETTTEEC-CEECSTTSCEEECCCEECSSSCEEEEEEEETTEEEEEES
T ss_pred ECCCCCEEEEEeCCCcEEEEECCCCCCcceeeEeecCCCCceEEEEEcCCCCEEEEEc
Confidence 556899999999999999999987633 22778889999999999999999655554
No 88
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.5e-36 Score=253.69 Aligned_cols=271 Identities=10% Similarity=0.037 Sum_probs=193.0
Q ss_pred cCCEEEEccCCCcEEEEcCCcceecccCCCCCeeEEEEeCCEEEEEeCCCeEEEEeecCCCccccccCCccccceeeeec
Q 047325 53 SKDLLYTGSDSKNIRVWKNLKEFCGFKASSGLVKAIVISGEKIFTGHQDGKIRVWKISPKNQSVHKRAGTLPTLKDIFKS 132 (368)
Q Consensus 53 ~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~v~~~~~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~ 132 (368)
++.+|++|+.||+|++||+.+...........|.++.+... +++++.|++|++|+..............
T Consensus 47 d~~~l~sg~~Dg~v~iwd~~~~~~~~~~~~~~v~~~~~~~~-~~s~s~D~~i~~w~~~~~~~~~~~~~~~---------- 115 (343)
T 3lrv_A 47 DKWVCMCRCEDGALHFTQLKDSKTITTITTPNPRTGGEHPA-IISRGPCNRLLLLYPGNQITILDSKTNK---------- 115 (343)
T ss_dssp EEEEEEEEEETTEEEEEEESSSSCEEEEEEECCCTTCCCCS-EEEECSTTEEEEEETTTEEEEEETTTCC----------
T ss_pred CCCEEEEECCCCcEEEEECCCCcEEEEEecCCceeeeeCCc-eEEecCCCeEEEEEccCceEEeecCCcc----------
Confidence 45699999999999999987543222222456677777766 9999999999999876532111111000
Q ss_pred cCCCCceeEecccceeeeeecCCCEeEEEEcC--CCCEEEEEeCCCcEEEEEccCCeEEEEeec-CCCceEEEEeCCCC-
Q 047325 133 SIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQ--DCGLLYTASWDRTFKVWRISDSKCLESVSA-HDDAVNSVVSSSEG- 208 (368)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~-~~~~v~~~~~~~~~- 208 (368)
. ......+|...|.+++|+| +++++++++.||.|++||+++++.+..... +...+.+++|+|++
T Consensus 116 ------~------~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~pdg~ 183 (343)
T 3lrv_A 116 ------V------LREIEVDSANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQYIVHSAKSDVEYSSGVLHKDSL 183 (343)
T ss_dssp ------E------EEEEECCCSSCEEEEECCC---CCEEEEEETTCCEEEEESSSSCEEEEECCCSSCCCCEEEECTTSC
T ss_pred ------e------eEEeecCCCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEEecCCCCceEEEEECCCCC
Confidence 0 0011123678999999999 999999999999999999999998776643 55689999999999
Q ss_pred eEEEEcCCCeEEEEEcCCCCCCcccccceeecc-ccccEEEEEEcCCCCEEEEecCCCcEEEEeCCCcccccee--eecc
Q 047325 209 LIFTGSADGTVKVWKREQHGKGTKHSLAQTLLK-QECAVTALVVSSSRSIVYCGSSDGLVNFWEREKQLSHGGV--LKGH 285 (368)
Q Consensus 209 ~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~-~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~--~~~~ 285 (368)
+|++|+.||.|++||++.... ....+.. |..+|.+++|+|++.+|++++ |+.|++||+++....... +..|
T Consensus 184 ~lasg~~dg~i~iwd~~~~~~-----~~~~~~~~h~~~v~~l~fs~~g~~l~s~~-~~~v~iwd~~~~~~~~~~~~~~~~ 257 (343)
T 3lrv_A 184 LLALYSPDGILDVYNLSSPDQ-----ASSRFPVDEEAKIKEVKFADNGYWMVVEC-DQTVVCFDLRKDVGTLAYPTYTIP 257 (343)
T ss_dssp EEEEECTTSCEEEEESSCTTS-----CCEECCCCTTSCEEEEEECTTSSEEEEEE-SSBEEEEETTSSTTCBSSCCCBC-
T ss_pred EEEEEcCCCEEEEEECCCCCC-----CccEEeccCCCCEEEEEEeCCCCEEEEEe-CCeEEEEEcCCCCcceeecccccc
Confidence 899999999999999987632 2145555 899999999999999999999 559999999986554221 1112
Q ss_pred ce----EEEEEEeCCCEEEEeeC-CCeEEEEecCCCceeeeEeeeccccCeeEEEEec---CCeeeecCCcceEEEEEee
Q 047325 286 KL----AVLCLAAAGKLVFSGSA-DKTICVWRRDGAIHTCLSVLTGHTGPVKCLAVEE---DRDSSSSTSSCAQRWIVYS 357 (368)
Q Consensus 286 ~~----~~~~~~~~~~~l~~~~~-dg~i~iw~~~~~~~~~~~~~~~h~~~v~~l~~~~---~~~~~~~~~~~~~~w~l~s 357 (368)
.. ..++++|++++|++++. |+.|++|+++..... ... .++..++|.+ +...+++++.+..+..+..
T Consensus 258 ~~~~~~~~~~~~~~g~~l~~~s~~d~~i~v~~~~~~~~~--~~~----~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~ 331 (343)
T 3lrv_A 258 EFKTGTVTYDIDDSGKNMIAYSNESNSLTIYKFDKKTKN--WTK----DEESALCLQSDTADFTDMDVVCGDGGIAAILK 331 (343)
T ss_dssp ----CCEEEEECTTSSEEEEEETTTTEEEEEEECTTTCS--EEE----EEEEECCC----CCCCEEEEEEETTEEEEEEE
T ss_pred cccccceEEEECCCCCEEEEecCCCCcEEEEEEcccccc--eEe----cCceeEecCccccccceeEEEecCCceEEEEe
Confidence 22 24778889999999998 999999999655221 111 5677777877 6665555554444434433
Q ss_pred C
Q 047325 358 G 358 (368)
Q Consensus 358 g 358 (368)
.
T Consensus 332 ~ 332 (343)
T 3lrv_A 332 T 332 (343)
T ss_dssp C
T ss_pred c
Confidence 3
No 89
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.9e-35 Score=254.26 Aligned_cols=266 Identities=11% Similarity=0.028 Sum_probs=198.9
Q ss_pred ccCcCCcEEEEEecCC--EEEEccCCCcEEEEcCCcceecccCCCCCeeEEEEeCCEEEEEeCCCeEEEEeecCCCcccc
Q 047325 40 LVREEGHIYSLAASKD--LLYTGSDSKNIRVWKNLKEFCGFKASSGLVKAIVISGEKIFTGHQDGKIRVWKISPKNQSVH 117 (368)
Q Consensus 40 ~~~h~~~i~~~~~~~~--~l~s~~~dg~i~iw~~~~~~~~~~~~~~~v~~~~~~~~~l~s~~~dg~i~vw~~~~~~~~~~ 117 (368)
-+.-...|.+++|+++ ++||++.|++|+ |. +....+.+|...|.+++|+++- .++. |++.+.+....
T Consensus 11 ~~~~~~~v~sv~~SpDG~~iASas~D~TV~--d~-~~~~~l~gh~~~v~~V~FsPdg-----~~~~---~~~~~~~~~~~ 79 (588)
T 2j04_A 11 RKEFEDWKNNLTWARDGTLYLTTFPDISIG--QP-KYAKDINCNSKNLFHVKEFPLE-----FENK---LDFELAQQNGL 79 (588)
T ss_dssp SCCCSSSSCCEEECTTSCEEEECSSSEEEE--EE-CCCSCCSSBGGGTEEEEEECCC-----CCCT---TTTSCCCSSCS
T ss_pred HhHhhccEEEEEECCCCCEEEEEcCCceee--cc-cccceecCCCccEEEEEECCCC-----Ccce---EEEEeCCCceE
Confidence 3444678999999866 999999999999 63 3334558999999999997432 3444 44444332222
Q ss_pred ccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcCCCCEEEEEeCCCcEEEEEccCCeEEEEeecCCC
Q 047325 118 KRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCGLLYTASWDRTFKVWRISDSKCLESVSAHDD 197 (368)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~ 197 (368)
.... |...|.+++|+|+|.+|++++.||.|++||... ++..+. |..
T Consensus 80 ~~~~-------------------------------~~~~V~~vawSPdG~~LAs~s~dg~V~iwd~~~--~l~~l~-~~~ 125 (588)
T 2j04_A 80 LNSQ-------------------------------PVCYPRVCKPSPIDDWMAVLSNNGNVSVFKDNK--MLTNLD-SKG 125 (588)
T ss_dssp STTS-------------------------------CSCCEEEEEECSSSSCEEEEETTSCEEEEETTE--EEEECC-CSS
T ss_pred eecC-------------------------------CCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCc--eeeecc-CCC
Confidence 2111 678899999999999999999999999999544 666666 665
Q ss_pred -----ceEEEEeCCCC-eEEEEcCCCeEEEEEcCCCCCCc-ccccceee----ccccccEEEEEEcCCCCEEEEecCCCc
Q 047325 198 -----AVNSVVSSSEG-LIFTGSADGTVKVWKREQHGKGT-KHSLAQTL----LKQECAVTALVVSSSRSIVYCGSSDGL 266 (368)
Q Consensus 198 -----~v~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~-~~~~~~~~----~~~~~~i~~~~~~~~~~~l~~~~~dg~ 266 (368)
.+.+++|+|+| +|++|+.||+|++||+..+.... .......+ .+|...|.+++|+|++ +++++.|+.
T Consensus 126 ~~~~~sv~svafSPDG~~LAsgs~DGtVkIWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg--Laass~D~t 203 (588)
T 2j04_A 126 NLSSRTYHCFEWNPIESSIVVGNEDGELQFFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV--LVAALSNNS 203 (588)
T ss_dssp CSTTTCEEEEEECSSSSCEEEEETTSEEEEEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE--EEEEETTCC
T ss_pred ccccccEEEEEEcCCCCEEEEEcCCCEEEEEECCCCccccccceeeeeeecccccccccEEEEEEcCCc--EEEEeCCCe
Confidence 49999999999 99999999999999998642100 00123343 5677899999999999 888889999
Q ss_pred EEEEeCCCcccc--ceee-eccceEEEEEEeCCCEEEEeeCCCeEEEEecCCCceeeeEeeeccccCeeEEEE--ecCCe
Q 047325 267 VNFWEREKQLSH--GGVL-KGHKLAVLCLAAAGKLVFSGSADKTICVWRRDGAIHTCLSVLTGHTGPVKCLAV--EEDRD 341 (368)
Q Consensus 267 i~i~d~~~~~~~--~~~~-~~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~~ 341 (368)
|++||+.++... ...+ .+|...|.++++.++.|++++ ++.|++||+.+. .......+|...|.+++| +|++.
T Consensus 204 VrlWd~~~~~~~~~~~tL~~~h~~~V~svaFsg~~LASa~-~~tIkLWd~~~~--~~~~~~~gh~~~V~~va~~~s~d~~ 280 (588)
T 2j04_A 204 VFSMTVSASSHQPVSRMIQNASRRKITDLKIVDYKVVLTC-PGYVHKIDLKNY--SISSLKTGSLENFHIIPLNHEKEST 280 (588)
T ss_dssp EEEECCCSSSSCCCEEEEECCCSSCCCCEEEETTEEEEEC-SSEEEEEETTTT--EEEEEECSCCSCCCEEEETTCSSCE
T ss_pred EEEEECCCCccccceeeecccccCcEEEEEEECCEEEEEe-CCeEEEEECCCC--eEEEEEcCCCceEEEEEeeeCCCCC
Confidence 999999876642 1234 467777766555578999887 699999999876 332222279999999999 99999
Q ss_pred eeecCCcce-EEEEE
Q 047325 342 SSSSTSSCA-QRWIV 355 (368)
Q Consensus 342 ~~~~~~~~~-~~w~l 355 (368)
.+++++.++ ++|.+
T Consensus 281 ~La~a~edG~klw~~ 295 (588)
T 2j04_A 281 ILLMSNKTSYKVLLE 295 (588)
T ss_dssp EEEECSSCEEEEEES
T ss_pred EEEEEcCCCCEEEee
Confidence 777766444 36654
No 90
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=100.00 E-value=7.6e-35 Score=248.47 Aligned_cols=246 Identities=15% Similarity=0.151 Sum_probs=204.8
Q ss_pred eeeeccCcCCcEEEEEecCC--EEEEccCCCcEEEEcCCcc----eecccCCCCCeeEEEEe--CCEEEEEeCCCeEEEE
Q 047325 36 LIGSLVREEGHIYSLAASKD--LLYTGSDSKNIRVWKNLKE----FCGFKASSGLVKAIVIS--GEKIFTGHQDGKIRVW 107 (368)
Q Consensus 36 ~~~~~~~h~~~i~~~~~~~~--~l~s~~~dg~i~iw~~~~~----~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~vw 107 (368)
.+..+.+|.+.|.+++|+++ +|++++.||.|++||+... ...+..|...|.+++|+ +++|++++.||.|++|
T Consensus 44 ~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~ 123 (372)
T 1k8k_C 44 QVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISIC 123 (372)
T ss_dssp EEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEETTEEEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEE
T ss_pred eeeeecCCCCcccEEEEeCCCCEEEEEcCCCeEEEEECCCCeeeeeEEeecCCCceeEEEECCCCCEEEEEeCCCEEEEE
Confidence 77888999999999999854 9999999999999998654 33456799999999998 7899999999999999
Q ss_pred eecCCCccccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcCCCCEEEEEeCCCcEEEEEc----
Q 047325 108 KISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCGLLYTASWDRTFKVWRI---- 183 (368)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~---- 183 (368)
|++......... ....+|...|.+++|+|++++|++++.|+.|++||+
T Consensus 124 d~~~~~~~~~~~----------------------------~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~ 175 (372)
T 1k8k_C 124 YFEQENDWWVCK----------------------------HIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKE 175 (372)
T ss_dssp EEETTTTEEEEE----------------------------EECTTCCSCEEEEEECTTSSEEEEEETTSCEEEEECCCTT
T ss_pred EecCCCcceeee----------------------------eeecccCCCeeEEEEcCCCCEEEEEcCCCCEEEEEccccc
Confidence 998765311100 011227889999999999999999999999999995
Q ss_pred --------------cCCeEEEEeecCCCceEEEEeCCCC-eEEEEcCCCeEEEEEcCCCCCCcccccceeeccccccEEE
Q 047325 184 --------------SDSKCLESVSAHDDAVNSVVSSSEG-LIFTGSADGTVKVWKREQHGKGTKHSLAQTLLKQECAVTA 248 (368)
Q Consensus 184 --------------~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~i~~ 248 (368)
..++.+..+..|...|.+++|+|++ .|++++.|+.|++||++.. .....+..|...+.+
T Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~------~~~~~~~~~~~~v~~ 249 (372)
T 1k8k_C 176 VEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKK------MAVATLASETLPLLA 249 (372)
T ss_dssp TSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETTTEEEEEEGGGT------TEEEEEECSSCCEEE
T ss_pred ccccccccccccccchhhheEecCCCCCeEEEEEECCCCCEEEEEeCCCEEEEEECCCC------ceeEEEccCCCCeEE
Confidence 4678889999999999999999999 9999999999999999865 346667788889999
Q ss_pred EEEcCCCCEEEEecCCCcEEEEeCCC--ccc--------------------------------c------ceeeeccceE
Q 047325 249 LVVSSSRSIVYCGSSDGLVNFWEREK--QLS--------------------------------H------GGVLKGHKLA 288 (368)
Q Consensus 249 ~~~~~~~~~l~~~~~dg~i~i~d~~~--~~~--------------------------------~------~~~~~~~~~~ 288 (368)
++|+|++++|+++ .|+.|++|+++. +.. . .....+|...
T Consensus 250 ~~~~~~~~~l~~~-~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~ 328 (372)
T 1k8k_C 250 VTFITESSLVAAG-HDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKKASSEGSAAAGAGLDSLHKNS 328 (372)
T ss_dssp EEEEETTEEEEEE-TTSSCEEEEEETTTTEEEECCCCCCC--------CHHHHHHHCCCCC---------CCCSSSSSSC
T ss_pred EEEecCCCEEEEE-eCCeEEEEEccCcCceEEEeeccCccccchhhhcchhhhhhhcccccccccCccccccccccccCC
Confidence 9999999988888 899999999987 310 0 1222478888
Q ss_pred EEEEE---eCC---CEEEEeeCCCeEEEEecCCC
Q 047325 289 VLCLA---AAG---KLVFSGSADKTICVWRRDGA 316 (368)
Q Consensus 289 ~~~~~---~~~---~~l~~~~~dg~i~iw~~~~~ 316 (368)
|.++. +++ .+|++|+.||.|++|++++.
T Consensus 329 v~~~~~~~~~g~~~~~l~s~~~Dg~i~~W~~~~~ 362 (372)
T 1k8k_C 329 VSQISVLSGGKAKCSQFCTTGMDGGMSIWDVRSL 362 (372)
T ss_dssp EEEEEEEESTTTSCSEEEEEETTSEEEEEEHHHH
T ss_pred cceeEEecCCCcceeeEEEecCCCceEEEEecCh
Confidence 87775 356 89999999999999998754
No 91
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=100.00 E-value=1.4e-35 Score=252.45 Aligned_cols=236 Identities=12% Similarity=0.171 Sum_probs=192.5
Q ss_pred cccCCCCCeeEEEEe------CCEEEEEeCCCeEEEEeecCCCccccccCCccccceeeeeccCCCCceeEecccceeee
Q 047325 77 GFKASSGLVKAIVIS------GEKIFTGHQDGKIRVWKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALW 150 (368)
Q Consensus 77 ~~~~~~~~v~~~~~~------~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (368)
...+|..+|.+++|+ ...+++++.++.|++||+.+++........ ..
T Consensus 13 ~~~~h~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~~~~~~~---------------------------~~ 65 (366)
T 3k26_A 13 LKEDHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQSY---------------------------VD 65 (366)
T ss_dssp EECTTCSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGCEEEEEEE---------------------------EC
T ss_pred eecCCCCceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcEEEeeeec---------------------------cc
Confidence 345899999999998 345777777889999999866532211100 00
Q ss_pred eecCCCEeEEEEcCC----CCEEEEEeCCCcEEEEEccCCeEEEEeecCCCceEEEEeCC-CC-eEEEEcCCCeEEEEEc
Q 047325 151 IRHSDAVSCMSLDQD----CGLLYTASWDRTFKVWRISDSKCLESVSAHDDAVNSVVSSS-EG-LIFTGSADGTVKVWKR 224 (368)
Q Consensus 151 ~~~~~~v~~~~~~~~----~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~-~~-~l~~~~~dg~i~i~d~ 224 (368)
..|...|.+++|+|+ +.+|++++.||.|++||+.+++.+..+.+|...|.+++|+| ++ .|++++.||.|++||+
T Consensus 66 ~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~ 145 (366)
T 3k26_A 66 ADADENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNI 145 (366)
T ss_dssp SCTTCCEEEEEEEECTTTCCEEEEEEETTCEEEEECTTTCCEEEEEESCCSCEEEEEECSSCTTEEEEEETTSCEEEEET
T ss_pred cCCCCcEEEEEeccCCCCCCCEEEEecCCCEEEEEEchhceEeeeecCCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEe
Confidence 116788999999998 67999999999999999999999999999999999999999 77 9999999999999999
Q ss_pred CCCCCCcccccceee---ccccccEEEEEEcCCCCEEEEecCCCcEEEEeCCCccccce---------------------
Q 047325 225 EQHGKGTKHSLAQTL---LKQECAVTALVVSSSRSIVYCGSSDGLVNFWEREKQLSHGG--------------------- 280 (368)
Q Consensus 225 ~~~~~~~~~~~~~~~---~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~--------------------- 280 (368)
+... ....+ ..|...|.+++|+|++++|++++.||.|++||+++......
T Consensus 146 ~~~~------~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (366)
T 3k26_A 146 QTDT------LVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKI 219 (366)
T ss_dssp TTTE------EEEEECSTTSCSSCEEEEEECTTSSEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEE
T ss_pred ecCe------EEEEecccccccCceeEEEECCCCCEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceee
Confidence 8652 33444 67899999999999999999999999999999987543311
Q ss_pred ------eeeccceEEEEEEeCCCEEEEeeCCCeEEEEecCCCce------------eeeEeeeccccCeeEEEEecC--C
Q 047325 281 ------VLKGHKLAVLCLAAAGKLVFSGSADKTICVWRRDGAIH------------TCLSVLTGHTGPVKCLAVEED--R 340 (368)
Q Consensus 281 ------~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~------------~~~~~~~~h~~~v~~l~~~~~--~ 340 (368)
....|...+.++.+++++|++++.||.|++||+..... ..+..+..|...|++++|+|+ +
T Consensus 220 ~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~ 299 (366)
T 3k26_A 220 HFPDFSTRDIHRNYVDCVRWLGDLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFSMDFWQ 299 (366)
T ss_dssp CCCSEEECSSCSSCCCEEEEETTEEEEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSCCSSCCCCEECTTS
T ss_pred ccCccccccCCcceEEEEEEcCCEEEEEecCCEEEEEeCCCccccccccccCCcchheeccccccCCcEEEEEEcCCCCC
Confidence 11237788888888899999999999999999876533 457788899999999999999 9
Q ss_pred eeeec
Q 047325 341 DSSSS 345 (368)
Q Consensus 341 ~~~~~ 345 (368)
.++++
T Consensus 300 ~~l~~ 304 (366)
T 3k26_A 300 KMLAL 304 (366)
T ss_dssp SEEEE
T ss_pred cEEEE
Confidence 85443
No 92
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=100.00 E-value=1.6e-34 Score=248.68 Aligned_cols=254 Identities=16% Similarity=0.184 Sum_probs=204.3
Q ss_pred ceeeeccCcCCcEEEEEec------C---CEEEEccCCCcEEEEcCCc--c-----eecccCC-----CCCeeEEEEe--
Q 047325 35 GLIGSLVREEGHIYSLAAS------K---DLLYTGSDSKNIRVWKNLK--E-----FCGFKAS-----SGLVKAIVIS-- 91 (368)
Q Consensus 35 ~~~~~~~~h~~~i~~~~~~------~---~~l~s~~~dg~i~iw~~~~--~-----~~~~~~~-----~~~v~~~~~~-- 91 (368)
..+..+.+|...|.+++|+ + ++|++++.||.|++||+.. . ...+..| ...|.+++|+
T Consensus 53 ~~~~~~~~h~~~v~~~~~~~~~~~~g~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 132 (397)
T 1sq9_A 53 DKSYSHFVHKSGLHHVDVLQAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGAS 132 (397)
T ss_dssp GGEEEEECCTTCEEEEEEEEEEETTTEEEEEEEEEETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECC
T ss_pred CcceEEecCCCcEEEEEEecccccCCccccEEEEEcCCCCEEEEEccCCcccccccceeecccccccCCCcEEEEEEeec
Confidence 3677888999999999986 5 6899999999999999763 2 5667778 5999999998
Q ss_pred ----CCE-EEEEeCCCeEEEEeecC------CCccccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEE
Q 047325 92 ----GEK-IFTGHQDGKIRVWKISP------KNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCM 160 (368)
Q Consensus 92 ----~~~-l~s~~~dg~i~vw~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 160 (368)
+++ |++++.||.|++||+.+ ++......... + .. .......|...|.++
T Consensus 133 ~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~------~-~~-------------~~~~~~~~~~~i~~~ 192 (397)
T 1sq9_A 133 NDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLE------L-QG-------------TVESPMTPSQFATSV 192 (397)
T ss_dssp C----CEEEEEEETTSCEEEEEEESSSSHHHHTTTCCCCEEE------E-EE-------------EECCSSSSCCCCCEE
T ss_pred cCCCCceEEEEEeCCCcEEEEeCCccccccccceeeccCcce------e-ee-------------eeccccCCCCCceEE
Confidence 678 99999999999999987 33222000000 0 00 000002278899999
Q ss_pred EEcCCCCEEEEEeCCCcEEEEEccCCeEEEEeec---C---CCceEEEEeCCCC-eEEEEcCC---CeEEEEEcCCCCCC
Q 047325 161 SLDQDCGLLYTASWDRTFKVWRISDSKCLESVSA---H---DDAVNSVVSSSEG-LIFTGSAD---GTVKVWKREQHGKG 230 (368)
Q Consensus 161 ~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~---~---~~~v~~~~~~~~~-~l~~~~~d---g~i~i~d~~~~~~~ 230 (368)
+|+|++ +|++++.|+.|++||+++++.+..+.. | ...|.+++|+|++ +|++++.| +.|++||++...
T Consensus 193 ~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~h~~~~~~i~~i~~~~~~~~l~~~~~d~~~g~i~i~d~~~~~-- 269 (397)
T 1sq9_A 193 DISERG-LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGE-- 269 (397)
T ss_dssp EECTTS-EEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTCC--
T ss_pred EECCCc-eEEEEeCCCcEEEEECCCCceeEEEeccccccccCCccceEEECCCCCEEEEEecCCCCceEEEEECCCCc--
Confidence 999999 999999999999999999999999998 8 9999999999999 99999999 999999998652
Q ss_pred cccccceeecc-------------ccccEEEEEEcCCCCEEEEecCCCcEEEEeCCCccccceeee------cc------
Q 047325 231 TKHSLAQTLLK-------------QECAVTALVVSSSRSIVYCGSSDGLVNFWEREKQLSHGGVLK------GH------ 285 (368)
Q Consensus 231 ~~~~~~~~~~~-------------~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~------~~------ 285 (368)
....+.. |...|.+++|+|++++|++++.||.|++||+++.+.. ..+. .|
T Consensus 270 ----~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~-~~~~~~~~~~~~~~~~~~ 344 (397)
T 1sq9_A 270 ----RIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERI-TTLNMHCDDIEIEEDILA 344 (397)
T ss_dssp ----EEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEE-EEEECCGGGCSSGGGCCC
T ss_pred ----ccceeccCcccccccccccccCCcEEEEEECCCCCEEEEEeCCCeEEEEEcCCCcee-EEEecccCcccchhhhhc
Confidence 4555666 8899999999999999999999999999999987655 3444 45
Q ss_pred ---------ceEE--EEEEeCC----------CEEEEeeCCCeEEEEecCCC
Q 047325 286 ---------KLAV--LCLAAAG----------KLVFSGSADKTICVWRRDGA 316 (368)
Q Consensus 286 ---------~~~~--~~~~~~~----------~~l~~~~~dg~i~iw~~~~~ 316 (368)
...+ +++++++ ++|++|+.||.|++|+++++
T Consensus 345 g~~~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~l~s~~~dg~i~iw~~~~g 396 (397)
T 1sq9_A 345 VDEHGDSLAEPGVFDVKFLKKGWRSGMGADLNESLCCVCLDRSIRWFREAGG 396 (397)
T ss_dssp BCTTSCBCSSCCEEEEEEECTTTSBSTTCTTSCEEEEEETTTEEEEEEEEC-
T ss_pred cccccccccCCceeEEEeccccccccccccccceEEEecCCCcEEEEEcCCC
Confidence 6666 5556677 79999999999999998764
No 93
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=100.00 E-value=3.9e-35 Score=248.07 Aligned_cols=285 Identities=11% Similarity=0.085 Sum_probs=192.8
Q ss_pred CCceeeeccCcCCcEEEEEecCC--EEEEccCCCcEEEEcCCcceecccCCCCCeeEEEEe--CCEE-EEEeCCCeEEEE
Q 047325 33 QNGLIGSLVREEGHIYSLAASKD--LLYTGSDSKNIRVWKNLKEFCGFKASSGLVKAIVIS--GEKI-FTGHQDGKIRVW 107 (368)
Q Consensus 33 ~~~~~~~~~~h~~~i~~~~~~~~--~l~s~~~dg~i~iw~~~~~~~~~~~~~~~v~~~~~~--~~~l-~s~~~dg~i~vw 107 (368)
..+.+.++..|.+.|++++|+++ +|++|+.|+ +++||..........+...+..+.+. ++.+ ++++.|++|++|
T Consensus 8 ~~~~~~~~~~h~~~V~~v~fs~dg~~la~g~~~~-~~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~iW 86 (355)
T 3vu4_A 8 TRNPIVPENHVSNPVTDYEFNQDQSCLILSTLKS-FEIYNVHPVAHIMSQEMRHLSKVRMLHRTNYVAFVTGVKEVVHIW 86 (355)
T ss_dssp -----------CCCCCEEEECTTSSEEEEECSSE-EEEEEETTEEEEEEEECSCCCEEEECTTSSEEEEECSSTTEEEEE
T ss_pred ccCCccccccCCCceEEEEECCCCCEEEEEcCCE-EEEEecCCcceeeeeecCCeEEEEEcCCCCEEEEEECCccEEEEE
Confidence 34445567899999999999865 888888775 78999875544333333346666665 6665 677888999999
Q ss_pred eecCCCccccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcCCCCEEEEEeCCCcEEEEEccCC-
Q 047325 108 KISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCGLLYTASWDRTFKVWRISDS- 186 (368)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~- 186 (368)
|+.+++..... .+...|.++.++++ .++++ .|+.|++||+.++
T Consensus 87 d~~~~~~~~~~---------------------------------~~~~~v~~v~~~~~--~~~~~-~~~~i~i~d~~~~~ 130 (355)
T 3vu4_A 87 DDVKKQDVSRI---------------------------------KVDAPVKDLFLSRE--FIVVS-YGDVISVFKFGNPW 130 (355)
T ss_dssp ETTTTEEEEEE---------------------------------ECSSCEEEEEECSS--EEEEE-ETTEEEEEESSTTC
T ss_pred ECCCCcEEEEE---------------------------------ECCCceEEEEEcCC--EEEEE-EcCEEEEEECCCCc
Confidence 99877643221 16678999999876 34444 3789999999988
Q ss_pred eEEEEeecCCCceEEEEeCCCCeEEE--EcCCCeEEEEEcCCCCCC---------ccccc-ceeeccccccEEEEEEcCC
Q 047325 187 KCLESVSAHDDAVNSVVSSSEGLIFT--GSADGTVKVWKREQHGKG---------TKHSL-AQTLLKQECAVTALVVSSS 254 (368)
Q Consensus 187 ~~~~~~~~~~~~v~~~~~~~~~~l~~--~~~dg~i~i~d~~~~~~~---------~~~~~-~~~~~~~~~~i~~~~~~~~ 254 (368)
+.+..+.. +...+++++ ..++. |+.||.|++||++..... ....+ ...+.+|...|.+++|+|+
T Consensus 131 ~~~~~~~~---~~~~~~~s~-~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~ 206 (355)
T 3vu4_A 131 KRITDDIR---FGGVCEFSN-GLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRK 206 (355)
T ss_dssp CBSSCCEE---EEEEEEEET-TEEEEEESSCTTCEEEEECCC------------------CCEEECCCSSCEEEEEECTT
T ss_pred eeeEEecc---CCceEEEEc-cEEEEeCCCcCcEEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEECCC
Confidence 76666655 333445555 54444 689999999999864310 00012 5677899999999999999
Q ss_pred CCEEEEecCCCc-EEEEeCCCccccceeeec-cceEEE--EEEeCCCEEEEeeCCCeEEEEecCCCceeeeEeee-----
Q 047325 255 RSIVYCGSSDGL-VNFWEREKQLSHGGVLKG-HKLAVL--CLAAAGKLVFSGSADKTICVWRRDGAIHTCLSVLT----- 325 (368)
Q Consensus 255 ~~~l~~~~~dg~-i~i~d~~~~~~~~~~~~~-~~~~~~--~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~----- 325 (368)
+++|++|+.|++ |++||+++++.......+ |...+. +++|++++|++++.|++|++||+..........+.
T Consensus 207 g~~l~s~s~d~~~v~iwd~~~~~~~~~~~~g~h~~~v~~~~~s~~~~~l~s~s~d~~v~iw~~~~~~~~~~~~~~~~~~~ 286 (355)
T 3vu4_A 207 SDMVATCSQDGTIIRVFKTEDGVLVREFRRGLDRADVVDMKWSTDGSKLAVVSDKWTLHVFEIFNDQDNKRHALKGWINM 286 (355)
T ss_dssp SSEEEEEETTCSEEEEEETTTCCEEEEEECTTCCSCEEEEEECTTSCEEEEEETTCEEEEEESSCCSCCCSEETTTTEEC
T ss_pred CCEEEEEeCCCCEEEEEECCCCcEEEEEEcCCCCCcEEEEEECCCCCEEEEEECCCEEEEEEccCCCCcccccccceeec
Confidence 999999999998 999999988776444424 777774 45568999999999999999999754322211111
Q ss_pred ----------------ccccCeeEEEEecCCeeeecCC--cceEEEEEeeC
Q 047325 326 ----------------GHTGPVKCLAVEEDRDSSSSTS--SCAQRWIVYSG 358 (368)
Q Consensus 326 ----------------~h~~~v~~l~~~~~~~~~~~~~--~~~~~w~l~sg 358 (368)
.+..+...++|++++..+++++ +...+|.+..+
T Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~d~~~l~~~~~dg~~~~~~~~~~ 337 (355)
T 3vu4_A 287 KYFQSEWSLCNFKLSVDKHVRGCKIAWISESSLVVVWPHTRMIETFKVVFD 337 (355)
T ss_dssp CCCCCSSCSEEEECCCCTTCCCCEEEESSSSEEEEEETTTTEEEEEEEEEE
T ss_pred cccccccceeEEEeccCCCCCceEEEEeCCCCEEEEEeCCCeEEEEEEEcC
Confidence 1123347799999998665543 33455555443
No 94
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.6e-35 Score=272.48 Aligned_cols=247 Identities=21% Similarity=0.228 Sum_probs=199.9
Q ss_pred eeeccCcCCcEEEEEecCC--EEEEccCCCcEEEEcCC----cceecccCCCCCeeEEEEe----CCEEEEEeCCCeEEE
Q 047325 37 IGSLVREEGHIYSLAASKD--LLYTGSDSKNIRVWKNL----KEFCGFKASSGLVKAIVIS----GEKIFTGHQDGKIRV 106 (368)
Q Consensus 37 ~~~~~~h~~~i~~~~~~~~--~l~s~~~dg~i~iw~~~----~~~~~~~~~~~~v~~~~~~----~~~l~s~~~dg~i~v 106 (368)
+..+.+|.+.|++++|+++ +|++|+.||+|++||+. .....+.+|.+.|.+++|+ +++|++|+.||.|++
T Consensus 2 ~~~l~gH~~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~Dg~I~v 81 (753)
T 3jro_A 2 VVIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLI 81 (753)
T ss_dssp ------CCCCEEEECCCSSSCCEEEEETTTEEEEEEEETTEEEEEEEECCCSSCEEEEEECCTTSCSEEEEEETTSCEEE
T ss_pred eeecccCcceeEEEEECCCCCeEEEEECCCcEEEEecCCCCCccceeccCCcCceEEEEecCCCCCCEEEEEeCCCeEEE
Confidence 4568899999999999854 99999999999999986 2355788999999999997 679999999999999
Q ss_pred EeecCCCccccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcCC--CCEEEEEeCCCcEEEEEcc
Q 047325 107 WKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQD--CGLLYTASWDRTFKVWRIS 184 (368)
Q Consensus 107 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~d~~i~iwd~~ 184 (368)
||+.+++... ...+.+|...|++++|+|+ ++.+++|+.||.|++||++
T Consensus 82 wd~~~~~~~~------------------------------~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~ 131 (753)
T 3jro_A 82 WKEENGRWSQ------------------------------IAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFK 131 (753)
T ss_dssp EEEETTEEEE------------------------------EEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECC
T ss_pred EECCCCcccc------------------------------cccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEee
Confidence 9998764111 1223348999999999999 9999999999999999998
Q ss_pred CC--eEEEEeecCCCceEEEEeCCC-------------C-eEEEEcCCCeEEEEEcCCCCCCcccccceeeccccccEEE
Q 047325 185 DS--KCLESVSAHDDAVNSVVSSSE-------------G-LIFTGSADGTVKVWKREQHGKGTKHSLAQTLLKQECAVTA 248 (368)
Q Consensus 185 ~~--~~~~~~~~~~~~v~~~~~~~~-------------~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~i~~ 248 (368)
++ .....+.+|...|.+++|+|. + .+++|+.||.|++||++.... .......+..|...|.+
T Consensus 132 ~~~~~~~~~~~~~~~~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~--~~~~~~~~~~h~~~V~~ 209 (753)
T 3jro_A 132 ENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQ--TYVLESTLEGHSDWVRD 209 (753)
T ss_dssp SSSCCCCEEEECCSSCEEEEEECCCC---------CGGGCCEEEEETTSCEEEEEEETTTT--EEEEEEEECCCSSCEEE
T ss_pred cCCCcceeEeecCCCceEEEEecCcccccccccccCCCCCEEEEEECCCeEEEEeccCCcc--cceeeeeecCCCCcEEE
Confidence 77 345566789999999999993 5 999999999999999986532 22345567789999999
Q ss_pred EEEcCC---CCEEEEecCCCcEEEEeCCCccc----cceeeeccceEE--EEEEeCCCEEEEeeCCCeEEEEecCC
Q 047325 249 LVVSSS---RSIVYCGSSDGLVNFWEREKQLS----HGGVLKGHKLAV--LCLAAAGKLVFSGSADKTICVWRRDG 315 (368)
Q Consensus 249 ~~~~~~---~~~l~~~~~dg~i~i~d~~~~~~----~~~~~~~~~~~~--~~~~~~~~~l~~~~~dg~i~iw~~~~ 315 (368)
++|+|+ +++|++++.||.|++||++++.. .......|...+ ++++|++++|++|+.||.|++|++..
T Consensus 210 l~~sp~~~~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~Dg~I~vwd~~~ 285 (753)
T 3jro_A 210 VAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENL 285 (753)
T ss_dssp EEECCCCSSSEEEEEEESSSCEEEEEESSSSSCCBCCBSSSSCCSSCCCCEEECTTTCCEEEECSSSCEECCBCCS
T ss_pred EEeccCCCCCCEEEEEecCCEEEEecCCCCCCcceeEEeccCCCCCceEEEEEcCCCCEEEEEcCCCEEEEEecCC
Confidence 999999 89999999999999999987532 112223455555 56778999999999999999999863
No 95
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=100.00 E-value=6.8e-34 Score=239.56 Aligned_cols=245 Identities=22% Similarity=0.388 Sum_probs=196.3
Q ss_pred CCceeeeccCcCCcEEEEEecCC--EEEEccCCCcEEEEcCCcc--eecccCCCCCeeEEEEe--CCEEEEEeCCCeEEE
Q 047325 33 QNGLIGSLVREEGHIYSLAASKD--LLYTGSDSKNIRVWKNLKE--FCGFKASSGLVKAIVIS--GEKIFTGHQDGKIRV 106 (368)
Q Consensus 33 ~~~~~~~~~~h~~~i~~~~~~~~--~l~s~~~dg~i~iw~~~~~--~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~v 106 (368)
.......+.+|.+.|.+++|+++ +|++|+.|+.|++|+.... ......+...+..+.+. +.+|++++.|+.+++
T Consensus 75 ~~~~~~~l~~h~~~V~~~~~s~dg~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~~~~ 154 (340)
T 4aow_A 75 YGIPQRALRGHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKL 154 (340)
T ss_dssp SEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEE
T ss_pred cceeeEEEeCCCCCEEEEEECCCCCEEEEEcccccceEEeecccceeeeecCCCCceeEEEEeecCccceeecCCCeEEE
Confidence 34456788999999999999865 9999999999999998754 34456677778888777 789999999999999
Q ss_pred EeecCCCccccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcCCC--CEEEEEeCCCcEEEEEcc
Q 047325 107 WKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDC--GLLYTASWDRTFKVWRIS 184 (368)
Q Consensus 107 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~--~~l~~~~~d~~i~iwd~~ 184 (368)
||+.......... .+|...+..++|++++ .++++++.|+.|++||++
T Consensus 155 ~d~~~~~~~~~~~-------------------------------~~~~~~v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~ 203 (340)
T 4aow_A 155 WNTLGVCKYTVQD-------------------------------ESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLA 203 (340)
T ss_dssp ECTTSCEEEEECS-------------------------------SSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETT
T ss_pred EEeCCCceEEEEe-------------------------------ccccCcccceEEccCCCCcEEEEEcCCCEEEEEECC
Confidence 9987654322211 2388999999998854 578899999999999999
Q ss_pred CCeEEEEeecCCCceEEEEeCCCC-eEEEEcCCCeEEEEEcCCCCCCcccccceeeccccccEEEEEEcCCCCEEEEecC
Q 047325 185 DSKCLESVSAHDDAVNSVVSSSEG-LIFTGSADGTVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSSSRSIVYCGSS 263 (368)
Q Consensus 185 ~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~ 263 (368)
+++.+..+.+|...|.+++|+|++ +|++|+.|+.|++||++... ....+ .+...+.+++|+|++.+ ++++.
T Consensus 204 ~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~~~------~~~~~-~~~~~v~~~~~~~~~~~-~~~~~ 275 (340)
T 4aow_A 204 NCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGK------HLYTL-DGGDIINALCFSPNRYW-LCAAT 275 (340)
T ss_dssp TTEEEEEECCCSSCEEEEEECTTSSEEEEEETTCEEEEEETTTTE------EEEEE-ECSSCEEEEEECSSSSE-EEEEE
T ss_pred CCceeeEecCCCCcEEEEEECCCCCEEEEEeCCCeEEEEEeccCc------eeeee-cCCceEEeeecCCCCce-eeccC
Confidence 999999999999999999999999 99999999999999998652 23333 34567999999998765 45667
Q ss_pred CCcEEEEeCCCccccce--------eeeccceEEE--EEEeCCCEEEEeeCCCeEEEEecCCC
Q 047325 264 DGLVNFWEREKQLSHGG--------VLKGHKLAVL--CLAAAGKLVFSGSADKTICVWRRDGA 316 (368)
Q Consensus 264 dg~i~i~d~~~~~~~~~--------~~~~~~~~~~--~~~~~~~~l~~~~~dg~i~iw~~~~~ 316 (368)
|+.|++||+++...... ....|...|. +++|++++|++|+.||.|+|||+.++
T Consensus 276 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~Dg~v~iW~~~tG 338 (340)
T 4aow_A 276 GPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQTLFAGYTDNLVRVWQVTIG 338 (340)
T ss_dssp TTEEEEEETTTTEEEEEECCC-------CCCCCEEEEEECTTSSEEEEEETTSCEEEEEEEC-
T ss_pred CCEEEEEECCCCeEEEeccccceeeeccCCCCCEEEEEECCCCCEEEEEeCCCEEEEEeCCCc
Confidence 99999999986543321 2335666664 45578999999999999999999876
No 96
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5.7e-34 Score=237.18 Aligned_cols=243 Identities=19% Similarity=0.286 Sum_probs=204.0
Q ss_pred ccCCCceeeeccCcCCcEEEEEecCC--EEEEccCCCcEEEEcCCc-----ceecccCCCCCeeEEEEeCCEEEEEeCCC
Q 047325 30 NLPQNGLIGSLVREEGHIYSLAASKD--LLYTGSDSKNIRVWKNLK-----EFCGFKASSGLVKAIVISGEKIFTGHQDG 102 (368)
Q Consensus 30 ~~~~~~~~~~~~~h~~~i~~~~~~~~--~l~s~~~dg~i~iw~~~~-----~~~~~~~~~~~v~~~~~~~~~l~s~~~dg 102 (368)
++........+..|.+.|.+++|+++ +|++|+.||.|++|++.. ....+..|...|.++.|+++++++++.||
T Consensus 45 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~d~ 124 (313)
T 3odt_A 45 SKDDQWLGTVVYTGQGFLNSVCYDSEKELLLFGGKDTMINGVPLFATSGEDPLYTLIGHQGNVCSLSFQDGVVISGSWDK 124 (313)
T ss_dssp EESSSEEEEEEEECSSCEEEEEEETTTTEEEEEETTSCEEEEETTCCTTSCC-CEECCCSSCEEEEEEETTEEEEEETTS
T ss_pred ECCCCEEEEEeecCCccEEEEEECCCCCEEEEecCCCeEEEEEeeecCCCCcccchhhcccCEEEEEecCCEEEEEeCCC
Confidence 34556777888899999999999855 999999999999999753 35667889999999999999999999999
Q ss_pred eEEEEeecCCCccccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcC-CCCEEEEEeCCCcEEEE
Q 047325 103 KIRVWKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQ-DCGLLYTASWDRTFKVW 181 (368)
Q Consensus 103 ~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~iw 181 (368)
.|++|| ..+. ...+..|...+.++.+.| +++++++++.|+.|++|
T Consensus 125 ~i~~~d--~~~~--------------------------------~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~ 170 (313)
T 3odt_A 125 TAKVWK--EGSL--------------------------------VYNLQAHNASVWDAKVVSFSENKFLTASADKTIKLW 170 (313)
T ss_dssp EEEEEE--TTEE--------------------------------EEEEECCSSCEEEEEEEETTTTEEEEEETTSCEEEE
T ss_pred CEEEEc--CCcE--------------------------------EEecccCCCceeEEEEccCCCCEEEEEECCCCEEEE
Confidence 999999 2221 122344889999999988 89999999999999999
Q ss_pred EccCCeEEEEeec-CCCceEEEEeCCCCeEEEEcCCCeEEEEEcCCCCCCcccccceeeccccccEEEEEEcCCCCEEEE
Q 047325 182 RISDSKCLESVSA-HDDAVNSVVSSSEGLIFTGSADGTVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSSSRSIVYC 260 (368)
Q Consensus 182 d~~~~~~~~~~~~-~~~~v~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~ 260 (368)
| ..+....+.. |...+.+++|+|++.+++++.||.|++||++.. .....+..|...|.+++|+|++ .|++
T Consensus 171 d--~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~dg~i~i~d~~~~------~~~~~~~~~~~~i~~~~~~~~~-~l~~ 241 (313)
T 3odt_A 171 Q--NDKVIKTFSGIHNDVVRHLAVVDDGHFISCSNDGLIKLVDMHTG------DVLRTYEGHESFVYCIKLLPNG-DIVS 241 (313)
T ss_dssp E--TTEEEEEECSSCSSCEEEEEEEETTEEEEEETTSEEEEEETTTC------CEEEEEECCSSCEEEEEECTTS-CEEE
T ss_pred e--cCceEEEEeccCcccEEEEEEcCCCeEEEccCCCeEEEEECCch------hhhhhhhcCCceEEEEEEecCC-CEEE
Confidence 9 5667777777 889999999999999999999999999999865 3466677899999999999998 6889
Q ss_pred ecCCCcEEEEeCCCccccceeeeccceEEEEE--EeCCCEEEEeeCCCeEEEEecCCCc
Q 047325 261 GSSDGLVNFWEREKQLSHGGVLKGHKLAVLCL--AAAGKLVFSGSADKTICVWRRDGAI 317 (368)
Q Consensus 261 ~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~--~~~~~~l~~~~~dg~i~iw~~~~~~ 317 (368)
++.||.|++||+++++.. ..+..|...+.++ +++++ +++++.||.|++||++...
T Consensus 242 ~~~dg~v~iwd~~~~~~~-~~~~~~~~~i~~~~~~~~~~-~~~~~~dg~i~iw~~~~~~ 298 (313)
T 3odt_A 242 CGEDRTVRIWSKENGSLK-QVITLPAISIWSVDCMSNGD-IIVGSSDNLVRIFSQEKSR 298 (313)
T ss_dssp EETTSEEEEECTTTCCEE-EEEECSSSCEEEEEECTTSC-EEEEETTSCEEEEESCGGG
T ss_pred EecCCEEEEEECCCCcee-EEEeccCceEEEEEEccCCC-EEEEeCCCcEEEEeCCCCc
Confidence 999999999999987655 4556676666554 45777 6679999999999998763
No 97
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.2e-35 Score=257.26 Aligned_cols=252 Identities=12% Similarity=0.208 Sum_probs=191.4
Q ss_pred EEcCCc-ceecc-cCCCCCeeEEEEeC---CEEEEEeCCCeEEEEeecCCCccccccCCccccceeeeeccCCCCceeEe
Q 047325 68 VWKNLK-EFCGF-KASSGLVKAIVISG---EKIFTGHQDGKIRVWKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEV 142 (368)
Q Consensus 68 iw~~~~-~~~~~-~~~~~~v~~~~~~~---~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 142 (368)
.|+... .+..+ .+|.+.|.+++|+. .+|++|+.||+|++||+.+.+......
T Consensus 47 ~w~~~g~~~~~~~~~h~~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~----------------------- 103 (437)
T 3gre_A 47 MGNLRGKLIATLMENEPNSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGEVYS----------------------- 103 (437)
T ss_dssp GGGCCCCEEEEECTTTTSCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTTCCCS-----------------------
T ss_pred cccccceEEeeeccCCCCceEEEEECCCCCCEEEEecCCceEEEeECcccccCcccc-----------------------
Confidence 388653 45566 88999999999974 699999999999999987621110000
Q ss_pred cccceeeeeecCCCEeEEEEcCCCCEEEEEeCCCcEEEEEcc---CCeEEEEeec------------CCCceEEEE--eC
Q 047325 143 RRHRTALWIRHSDAVSCMSLDQDCGLLYTASWDRTFKVWRIS---DSKCLESVSA------------HDDAVNSVV--SS 205 (368)
Q Consensus 143 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~---~~~~~~~~~~------------~~~~v~~~~--~~ 205 (368)
.....+|...|++++|+|++++|++++.||.|++||+. +++.+..+.. +...+.++. ++
T Consensus 104 ----~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 179 (437)
T 3gre_A 104 ----SSLTYDCSSTVTQITMIPNFDAFAVSSKDGQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVN 179 (437)
T ss_dssp ----CSEEEECSSCEEEEEECTTSSEEEEEETTSEEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEEC
T ss_pred ----eeeeccCCCCEEEEEEeCCCCEEEEEeCCCEEEEEEeccccCCceeeccccceeEEEEccCcccccCceEEEEEEc
Confidence 00111389999999999999999999999999999995 5544443332 345566665 55
Q ss_pred CCC-eEEEEcCCCeEEEEEcCCCCCCcccccceeecc--ccccEEEEEEcCCCCEEEEecCCCcEEEEeCCCccccceee
Q 047325 206 SEG-LIFTGSADGTVKVWKREQHGKGTKHSLAQTLLK--QECAVTALVVSSSRSIVYCGSSDGLVNFWEREKQLSHGGVL 282 (368)
Q Consensus 206 ~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~--~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~ 282 (368)
+++ .+++++.|+.|++||++... ....+.. |...|.+++|+|++++|++|+.||.|++||++++.......
T Consensus 180 ~~~~~l~~~~~d~~i~iwd~~~~~------~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~ 253 (437)
T 3gre_A 180 EEKSLLVALTNLSRVIIFDIRTLE------RLQIIENSPRHGAVSSICIDEECCVLILGTTRGIIDIWDIRFNVLIRSWS 253 (437)
T ss_dssp SSCEEEEEEETTSEEEEEETTTCC------EEEEEECCGGGCCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEEB
T ss_pred CCCCEEEEEeCCCeEEEEeCCCCe------eeEEEccCCCCCceEEEEECCCCCEEEEEcCCCeEEEEEcCCccEEEEEe
Confidence 677 99999999999999998753 4555555 78999999999999999999999999999999876654433
Q ss_pred eccceEEEEEE------eCCCEEEEeeCCCeEEEEecCCCceeeeEeeec--------------------------cccC
Q 047325 283 KGHKLAVLCLA------AAGKLVFSGSADKTICVWRRDGAIHTCLSVLTG--------------------------HTGP 330 (368)
Q Consensus 283 ~~~~~~~~~~~------~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~--------------------------h~~~ 330 (368)
..|...+.++. +++.+|++|+.||.|++||+.+. ..+..+.+ |...
T Consensus 254 ~~~~~~v~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 331 (437)
T 3gre_A 254 FGDHAPITHVEVCQFYGKNSVIVVGGSSKTFLTIWNFVKG--HCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNA 331 (437)
T ss_dssp CTTCEEEEEEEECTTTCTTEEEEEEESTTEEEEEEETTTT--EEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGG
T ss_pred cCCCCceEEEEeccccCCCccEEEEEcCCCcEEEEEcCCC--cEEEEEEcCCCCCccceecccccccccceecccccCCc
Confidence 46777887663 34679999999999999999876 44444443 5566
Q ss_pred eeEEEEecCCeeeecCCcceEEEEEeeCCcccccccC
Q 047325 331 VKCLAVEEDRDSSSSTSSCAQRWIVYSGSLDKSDDDV 367 (368)
Q Consensus 331 v~~l~~~~~~~~~~~~~~~~~~w~l~sg~~D~~v~i~ 367 (368)
|++++|+ ++. .|++|+.|+.|++|
T Consensus 332 v~~l~~~-~~~------------~l~s~~~d~~i~~w 355 (437)
T 3gre_A 332 LSTISVS-NDK------------ILLTDEATSSIVMF 355 (437)
T ss_dssp GCCEEEE-TTE------------EEEEEGGGTEEEEE
T ss_pred eEEEEEC-Cce------------EEEecCCCCeEEEE
Confidence 7778887 556 56677777777776
No 98
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=100.00 E-value=1.3e-34 Score=245.61 Aligned_cols=241 Identities=13% Similarity=0.140 Sum_probs=189.0
Q ss_pred eccCcCCcEEEEEecCCEEEEc-----------cCCCcEEEEcCCcc---e--------ecccCCCCCeeEEEEe--CCE
Q 047325 39 SLVREEGHIYSLAASKDLLYTG-----------SDSKNIRVWKNLKE---F--------CGFKASSGLVKAIVIS--GEK 94 (368)
Q Consensus 39 ~~~~h~~~i~~~~~~~~~l~s~-----------~~dg~i~iw~~~~~---~--------~~~~~~~~~v~~~~~~--~~~ 94 (368)
.+.+|.+.|.+++++++.+++| +.|+.+|+|++... . .....+...+.+++|+ |++
T Consensus 68 ~l~~~~~~v~s~~~~~~~~~~g~~~~~~~l~s~~~d~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~fSpDg~~ 147 (365)
T 4h5i_A 68 ALEDNDDSPTAIDASKGIILVGCNENSTKITQGKGNKHLRKFKYDKVNDQLEFLTSVDFDASTNADDYTKLVYISREGTV 147 (365)
T ss_dssp ECCTTSCCCCEEEEETTEEEEECCCCHHHHHHTSCCCCEEEEEEETTTTEEEEEEEECSSCCCCTTCCEEEEEECTTSSC
T ss_pred EccCCCCceEEEEeCCCEEEEEECCCccEEEEecCCCcEEEEEecCCCceEEEeeeeceeecCCcccCEEEEEEcCCCCE
Confidence 5778999999999999877765 45788999986422 1 1123455668899998 777
Q ss_pred EEEE--eCCCeEEEEeecCCCccccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcCCCCEEEEE
Q 047325 95 IFTG--HQDGKIRVWKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCGLLYTA 172 (368)
Q Consensus 95 l~s~--~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~ 172 (368)
++++ +.|++|++||+++++..... .|...|.+++|+|++++++++
T Consensus 148 la~as~~~d~~i~iwd~~~~~~~~~~---------------------------------~~~~~V~~v~fspdg~~l~s~ 194 (365)
T 4h5i_A 148 AAIASSKVPAIMRIIDPSDLTEKFEI---------------------------------ETRGEVKDLHFSTDGKVVAYI 194 (365)
T ss_dssp EEEEESCSSCEEEEEETTTTEEEEEE---------------------------------ECSSCCCEEEECTTSSEEEEE
T ss_pred EEEEECCCCCEEEEeECCCCcEEEEe---------------------------------CCCCceEEEEEccCCceEEec
Confidence 6654 47899999999877543221 277889999999999999999
Q ss_pred eCCCcEEEEEccCCeEEE--EeecCCCceEEEEeCCCC-eEEEEcCCC----eEEEEEcCCCCCCcccccceeecccccc
Q 047325 173 SWDRTFKVWRISDSKCLE--SVSAHDDAVNSVVSSSEG-LIFTGSADG----TVKVWKREQHGKGTKHSLAQTLLKQECA 245 (368)
Q Consensus 173 ~~d~~i~iwd~~~~~~~~--~~~~~~~~v~~~~~~~~~-~l~~~~~dg----~i~i~d~~~~~~~~~~~~~~~~~~~~~~ 245 (368)
+. +.+++|+..+++.+. ....|...|.+++|+|++ .+++++.|+ .++.|++..... .......+..|...
T Consensus 195 s~-~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~~s~d~~~~~~i~~~~~~~~~~--~~~~~~~~~~~~~~ 271 (365)
T 4h5i_A 195 TG-SSLEVISTVTGSCIARKTDFDKNWSLSKINFIADDTVLIAASLKKGKGIVLTKISIKSGNT--SVLRSKQVTNRFKG 271 (365)
T ss_dssp CS-SCEEEEETTTCCEEEEECCCCTTEEEEEEEEEETTEEEEEEEESSSCCEEEEEEEEETTEE--EEEEEEEEESSCSC
T ss_pred cc-eeEEEEEeccCcceeeeecCCCCCCEEEEEEcCCCCEEEEEecCCcceeEEeeccccccee--cceeeeeecCCCCC
Confidence 85 557777777776654 345688899999999999 888888777 688888865421 11223456778899
Q ss_pred EEEEEEcCCCCEEEEecCCCcEEEEeCCCccccceeeeccceEEE--EEEeCCCEEEEeeCCCeEEEEecCC
Q 047325 246 VTALVVSSSRSIVYCGSSDGLVNFWEREKQLSHGGVLKGHKLAVL--CLAAAGKLVFSGSADKTICVWRRDG 315 (368)
Q Consensus 246 i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~~~~~dg~i~iw~~~~ 315 (368)
|++++|+|++++||+|+.|+.|+|||+++++.+.....+|...|. +|+||+++|++|+.|++|+||++..
T Consensus 272 V~~~~~Spdg~~lasgs~D~~V~iwd~~~~~~~~~~~~gH~~~V~~v~fSpdg~~laS~S~D~tvrvw~ip~ 343 (365)
T 4h5i_A 272 ITSMDVDMKGELAVLASNDNSIALVKLKDLSMSKIFKQAHSFAITEVTISPDSTYVASVSAANTIHIIKLPL 343 (365)
T ss_dssp EEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEETTSSSSCEEEEEECTTSCEEEEEETTSEEEEEECCT
T ss_pred eEeEEECCCCCceEEEcCCCEEEEEECCCCcEEEEecCcccCCEEEEEECCCCCEEEEEeCCCeEEEEEcCC
Confidence 999999999999999999999999999998777666778988875 5567999999999999999999864
No 99
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=100.00 E-value=4.8e-34 Score=247.89 Aligned_cols=248 Identities=17% Similarity=0.238 Sum_probs=203.1
Q ss_pred eeccCcCCcEEEEEecCC---EEEEccCCCcEEEEcCCc------------ceecccCCCCCeeEEEEe--CC-EEEEEe
Q 047325 38 GSLVREEGHIYSLAASKD---LLYTGSDSKNIRVWKNLK------------EFCGFKASSGLVKAIVIS--GE-KIFTGH 99 (368)
Q Consensus 38 ~~~~~h~~~i~~~~~~~~---~l~s~~~dg~i~iw~~~~------------~~~~~~~~~~~v~~~~~~--~~-~l~s~~ 99 (368)
.....|.+.|++++|+++ +|++++.||.|++||+.. ....+.+|...|.+++|+ +. +|++|+
T Consensus 122 ~~~~~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~ 201 (430)
T 2xyi_A 122 EIKINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSAS 201 (430)
T ss_dssp EEEEEESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTSTTEEEEEC
T ss_pred EEEEcCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCCCCCeEEEEe
Confidence 557789999999999864 899999999999999764 344677899999999998 44 999999
Q ss_pred CCCeEEEEeecCCCccccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcC-CCCEEEEEeCCCcE
Q 047325 100 QDGKIRVWKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQ-DCGLLYTASWDRTF 178 (368)
Q Consensus 100 ~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i 178 (368)
.||.|++|++..+....... .....+.+|...|.+++|+| ++.+|++++.|+.|
T Consensus 202 ~dg~i~vwd~~~~~~~~~~~-------------------------~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i 256 (430)
T 2xyi_A 202 DDHTICLWDINATPKEHRVI-------------------------DAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKL 256 (430)
T ss_dssp TTSCEEEEETTSCCBGGGEE-------------------------ECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEE
T ss_pred CCCeEEEEeCCCCCCCCcee-------------------------ccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeE
Confidence 99999999998753211100 01123345999999999999 67899999999999
Q ss_pred EEEEccCC---eEEEEeecCCCceEEEEeCCCC--eEEEEcCCCeEEEEEcCCCCCCcccccceeeccccccEEEEEEcC
Q 047325 179 KVWRISDS---KCLESVSAHDDAVNSVVSSSEG--LIFTGSADGTVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSS 253 (368)
Q Consensus 179 ~iwd~~~~---~~~~~~~~~~~~v~~~~~~~~~--~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 253 (368)
++||++++ +.+..+..|...|++++|+|++ .+++|+.||.|++||++.... +...+..|...|.+++|+|
T Consensus 257 ~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~-----~~~~~~~h~~~v~~i~~sp 331 (430)
T 2xyi_A 257 MIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKL-----KLHSFESHKDEIFQVQWSP 331 (430)
T ss_dssp EEEETTCSCSSSCSEEEECCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTS-----CSEEEECCSSCEEEEEECS
T ss_pred EEEECCCCCCCcceeEeecCCCCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCCC-----CeEEeecCCCCEEEEEECC
Confidence 99999987 5777888999999999999988 688999999999999986432 5667778999999999999
Q ss_pred CCC-EEEEecCCCcEEEEeCCCcc-------------ccceeeeccceEEEEEE--eCCC-EEEEeeCCCeEEEEecCC
Q 047325 254 SRS-IVYCGSSDGLVNFWEREKQL-------------SHGGVLKGHKLAVLCLA--AAGK-LVFSGSADKTICVWRRDG 315 (368)
Q Consensus 254 ~~~-~l~~~~~dg~i~i~d~~~~~-------------~~~~~~~~~~~~~~~~~--~~~~-~l~~~~~dg~i~iw~~~~ 315 (368)
+++ +|++++.||.|++||+.... .......+|...+.+++ |++. +|++++.||.|++|++..
T Consensus 332 ~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~dg~i~iw~~~~ 410 (430)
T 2xyi_A 332 HNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQMAE 410 (430)
T ss_dssp SCTTEEEEEETTSCCEEEEGGGTTCCCCHHHHHHCCTTEEEECCCCSSCEEEEEECSSSTTEEEEEETTSEEEEEEECH
T ss_pred CCCCEEEEEeCCCcEEEEeCCCCccccCccccccCCcceEEEcCCCCCCceEEEECCCCCCEEEEEECCCCEEEeEccc
Confidence 885 69999999999999998622 23345556777675555 5677 999999999999999864
No 100
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=100.00 E-value=2.2e-34 Score=269.98 Aligned_cols=242 Identities=21% Similarity=0.269 Sum_probs=206.5
Q ss_pred eecccCCCCCeeEEEEe--CCEEEEEeCCCeEEEEeecCCCccccccCCccccceeeeeccCCCCceeEecccceeeeee
Q 047325 75 FCGFKASSGLVKAIVIS--GEKIFTGHQDGKIRVWKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIR 152 (368)
Q Consensus 75 ~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (368)
...+.+|.+.|.+++|+ +.+|++++.||.|++||+.+++... .+.+
T Consensus 6 ~~~~~~h~~~v~~i~~sp~~~~la~~~~~g~v~iwd~~~~~~~~--------------------------------~~~~ 53 (814)
T 3mkq_A 6 KKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVEIWNYETQVEVR--------------------------------SIQV 53 (814)
T ss_dssp EEEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEE--------------------------------EEEC
T ss_pred ceeeecCCCceEEEEECCCCCEEEEEeCCCEEEEEECCCCceEE--------------------------------EEec
Confidence 45678999999999999 8899999999999999998765322 2344
Q ss_pred cCCCEeEEEEcCCCCEEEEEeCCCcEEEEEccCCeEEEEeecCCCceEEEEeCCCC-eEEEEcCCCeEEEEEcCCCCCCc
Q 047325 153 HSDAVSCMSLDQDCGLLYTASWDRTFKVWRISDSKCLESVSAHDDAVNSVVSSSEG-LIFTGSADGTVKVWKREQHGKGT 231 (368)
Q Consensus 153 ~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~ 231 (368)
|...|++++|+|++++|++++.||.|++||+.+++.+..+.+|...|.+++|+|++ .|++++.||.|++||++...
T Consensus 54 ~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~--- 130 (814)
T 3mkq_A 54 TETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNW--- 130 (814)
T ss_dssp CSSCEEEEEEEGGGTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSEEEEEEGGGTS---
T ss_pred CCCcEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEecCCCCEEEEEEeCCCCEEEEEcCCCEEEEEECCCCc---
Confidence 99999999999999999999999999999999999999999999999999999999 99999999999999997542
Q ss_pred ccccceeeccccccEEEEEEcC-CCCEEEEecCCCcEEEEeCCCccccceeeeccce--EEEEEEe--CCCEEEEeeCCC
Q 047325 232 KHSLAQTLLKQECAVTALVVSS-SRSIVYCGSSDGLVNFWEREKQLSHGGVLKGHKL--AVLCLAA--AGKLVFSGSADK 306 (368)
Q Consensus 232 ~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~--~~~~~~~--~~~~l~~~~~dg 306 (368)
.....+..|...|.+++|+| +++.|++++.||.|++||+++..........+.. ...+++| ++.+|++|+.||
T Consensus 131 --~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg 208 (814)
T 3mkq_A 131 --ALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDL 208 (814)
T ss_dssp --EEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCSSCSEEEECCCTTCCCEEEECCSTTCCEEEEECTTS
T ss_pred --eEEEEEcCCCCcEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcceeEEecCCCCCEEEEEEEECCCCCEEEEEeCCC
Confidence 24566778899999999999 8899999999999999999876665444444333 4466667 899999999999
Q ss_pred eEEEEecCCCceeeeEeeeccccCeeEEEEecCCeeeecCCcceEEEEEeeCCcccccccC
Q 047325 307 TICVWRRDGAIHTCLSVLTGHTGPVKCLAVEEDRDSSSSTSSCAQRWIVYSGSLDKSDDDV 367 (368)
Q Consensus 307 ~i~iw~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~w~l~sg~~D~~v~i~ 367 (368)
.|++||+.+. ..+..+.+|...|++++|+|++. .+++|+.||.|++|
T Consensus 209 ~i~~~d~~~~--~~~~~~~~~~~~v~~~~~~~~~~------------~l~~~~~dg~v~vw 255 (814)
T 3mkq_A 209 TIKIWDYQTK--SCVATLEGHMSNVSFAVFHPTLP------------IIISGSEDGTLKIW 255 (814)
T ss_dssp EEEEEETTTT--EEEEEEECCSSCEEEEEECSSSS------------EEEEEETTSCEEEE
T ss_pred EEEEEECCCC--cEEEEEcCCCCCEEEEEEcCCCC------------EEEEEeCCCeEEEE
Confidence 9999999876 67888889999999999999999 45555555555555
No 101
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=100.00 E-value=6.2e-35 Score=253.95 Aligned_cols=252 Identities=13% Similarity=0.128 Sum_probs=188.7
Q ss_pred cccCCCCCeeEEEEe---CCEEEEEeCCCeEEEEeecCCCccccccCCccccceeeeeccCCCCceeEecccceeeeeec
Q 047325 77 GFKASSGLVKAIVIS---GEKIFTGHQDGKIRVWKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRH 153 (368)
Q Consensus 77 ~~~~~~~~v~~~~~~---~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (368)
....|...|++|+|+ +++|++|+.||.|+|||+.+++...... +.+|
T Consensus 114 ~~~~~~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~~~~------------------------------~~gH 163 (435)
T 4e54_B 114 KAAPFDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIK------------------------------GIGA 163 (435)
T ss_dssp EEEECSSCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCCEEEC------------------------------CCSS
T ss_pred cCCCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCceeEEE------------------------------ccCC
Confidence 345688899999997 5689999999999999998765322211 2349
Q ss_pred CCCEeEEEEcC-CCCEEEEEeCCCcEEEEEccCCeEEEEeec--CCCceEEEEeCCCC-eEEEEcCCCeEEEEEcCCCCC
Q 047325 154 SDAVSCMSLDQ-DCGLLYTASWDRTFKVWRISDSKCLESVSA--HDDAVNSVVSSSEG-LIFTGSADGTVKVWKREQHGK 229 (368)
Q Consensus 154 ~~~v~~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~--~~~~v~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~ 229 (368)
.+.|++++|+| ++++|++|+.||+|++||++++........ +...+.+++|+|++ +|++|+.||.|++||++..
T Consensus 164 ~~~V~~l~f~p~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~~~-- 241 (435)
T 4e54_B 164 GGSITGLKFNPLNTNQFYASSMEGTTRLQDFKGNILRVFASSDTINIWFCSLDVSASSRMVVTGDNVGNVILLNMDGK-- 241 (435)
T ss_dssp SCCCCEEEECSSCTTEEEEECSSSCEEEEETTSCEEEEEECCSSCSCCCCCEEEETTTTEEEEECSSSBEEEEESSSC--
T ss_pred CCCEEEEEEeCCCCCEEEEEeCCCEEEEeeccCCceeEEeccCCCCccEEEEEECCCCCEEEEEeCCCcEeeeccCcc--
Confidence 99999999998 688999999999999999987654443333 33467889999999 9999999999999998743
Q ss_pred CcccccceeeccccccEEEEEEcCCCC-EEEEecCCCcEEEEeCCCccccc--eeeeccceEEEE--EEeCCCEEEEeeC
Q 047325 230 GTKHSLAQTLLKQECAVTALVVSSSRS-IVYCGSSDGLVNFWEREKQLSHG--GVLKGHKLAVLC--LAAAGKLVFSGSA 304 (368)
Q Consensus 230 ~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~--~~~~~~~~~~~~--~~~~~~~l~~~~~ 304 (368)
....+..|...|.+++|+|+++ +|++|+.|+.|++||+++..... ....+|...|.+ |+|++++|++|+.
T Consensus 242 -----~~~~~~~h~~~v~~v~~~p~~~~~~~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~s~~~ 316 (435)
T 4e54_B 242 -----ELWNLRMHKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGARLLTTDQ 316 (435)
T ss_dssp -----BCCCSBCCSSCEEEEEECTTCSSEEEEEETTSBCCEEETTTCCSSSCCSBCCBCSSCEEECCBCTTSSEEEEEES
T ss_pred -----eeEEEecccceEEeeeecCCCceEEEEecCcceeeEEecccccccceEEEeeeccccccceeECCCCCeeEEEcC
Confidence 3556778999999999999876 78899999999999998754432 233567777755 5578999999999
Q ss_pred CCeEEEEecCCCceeeeEeeecccc------CeeEEEEecCCeeeecCCcceEEEEEeeCCcccccccC
Q 047325 305 DKTICVWRRDGAIHTCLSVLTGHTG------PVKCLAVEEDRDSSSSTSSCAQRWIVYSGSLDKSDDDV 367 (368)
Q Consensus 305 dg~i~iw~~~~~~~~~~~~~~~h~~------~v~~l~~~~~~~~~~~~~~~~~~w~l~sg~~D~~v~i~ 367 (368)
||.|++||+... .....+..|.. .+....|+|++..++++........++++..++.|++|
T Consensus 317 D~~i~iwd~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~i~iw 383 (435)
T 4e54_B 317 KSEIRVYSASQW--DCPLGLIPHPHRHFQHLTPIKAAWHPRYNLIVVGRYPDPNFKSCTPYELRTIDVF 383 (435)
T ss_dssp SSCEEEEESSSS--SSEEEECCCCCCCCSSSCCCBCEECSSSSCEEEECCCCTTSCCSSTTCCCCEEEE
T ss_pred CCEEEEEECCCC--ccceEEecccccccccceeEEEEEcCCCCEEEEEEcCCCCeEEEEecCCCEEEEE
Confidence 999999999876 33444444432 23455677777766554322222234455555666665
No 102
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=100.00 E-value=6.7e-33 Score=236.01 Aligned_cols=258 Identities=16% Similarity=0.238 Sum_probs=212.6
Q ss_pred cccCCCceeeeccCcCCcEEEEEecCC--EEEEccCCCcEEEEcCCcc--eecccCCCCCeeEEEEe--CCEEEEEeCC-
Q 047325 29 ENLPQNGLIGSLVREEGHIYSLAASKD--LLYTGSDSKNIRVWKNLKE--FCGFKASSGLVKAIVIS--GEKIFTGHQD- 101 (368)
Q Consensus 29 ~~~~~~~~~~~~~~h~~~i~~~~~~~~--~l~s~~~dg~i~iw~~~~~--~~~~~~~~~~v~~~~~~--~~~l~s~~~d- 101 (368)
-++...+.+..+.+|.+.|.+++|+++ +|++++.||.|++||+.+. ...+. +...|.+++|+ +.++++++.+
T Consensus 59 wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~~~ 137 (369)
T 3zwl_B 59 WYSLNGERLGTLDGHTGTIWSIDVDCFTKYCVTGSADYSIKLWDVSNGQCVATWK-SPVPVKRVEFSPCGNYFLAILDNV 137 (369)
T ss_dssp EETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEEEEE-CSSCEEEEEECTTSSEEEEEECCB
T ss_pred EeCCCchhhhhhhhcCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEee-cCCCeEEEEEccCCCEEEEecCCc
Confidence 345677888899999999999999854 9999999999999998743 33444 88899999998 7899999999
Q ss_pred ----CeEEEEeecCCCccccccCCccccceeeeeccCCCCceeEecccceeeeeecCC--CEeEEEEcCCCCEEEEEeCC
Q 047325 102 ----GKIRVWKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSD--AVSCMSLDQDCGLLYTASWD 175 (368)
Q Consensus 102 ----g~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~v~~~~~~~~~~~l~~~~~d 175 (368)
|.|++||+............ .......+..|.. .+.+++|+|++++|++++.|
T Consensus 138 ~~~~g~i~~~d~~~~~~~~~~~~~---------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d 196 (369)
T 3zwl_B 138 MKNPGSINIYEIERDSATHELTKV---------------------SEEPIHKIITHEGLDAATVAGWSTKGKYIIAGHKD 196 (369)
T ss_dssp TTBCCEEEEEEEEECTTTCCEEEE---------------------CSSCSEEEECCTTCCCEEEEEECGGGCEEEEEETT
T ss_pred cCCCCEEEEEEecCCccceeeccc---------------------ccceeeeccCCcCccceeEEEEcCCCCEEEEEcCC
Confidence 99999999877543222111 1112223344665 99999999999999999999
Q ss_pred CcEEEEEccC-CeEEEEeecCCCceEEEEeCCCC-eEEEEcCCCeEEEEEcCCCCCCcccccceeeccccccEEEEEEcC
Q 047325 176 RTFKVWRISD-SKCLESVSAHDDAVNSVVSSSEG-LIFTGSADGTVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSS 253 (368)
Q Consensus 176 ~~i~iwd~~~-~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 253 (368)
|.|++||+++ ++.+..+..|...|.+++|+|++ +|++++.|+.|++||++... ....+. +...+.+++|+|
T Consensus 197 g~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~------~~~~~~-~~~~~~~~~~~~ 269 (369)
T 3zwl_B 197 GKISKYDVSNNYEYVDSIDLHEKSISDMQFSPDLTYFITSSRDTNSFLVDVSTLQ------VLKKYE-TDCPLNTAVITP 269 (369)
T ss_dssp SEEEEEETTTTTEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCC------EEEEEE-CSSCEEEEEECS
T ss_pred CEEEEEECCCCcEeEEEEecCCCceeEEEECCCCCEEEEecCCceEEEEECCCCc------eeeeec-CCCCceeEEecC
Confidence 9999999998 78899999999999999999999 99999999999999998752 233333 678899999999
Q ss_pred CCCEEEEecCCC--------------cEEEEeCCCccccceeeeccceEEEEE--EeCCCEEEEeeCCCeEEEEecCCC
Q 047325 254 SRSIVYCGSSDG--------------LVNFWEREKQLSHGGVLKGHKLAVLCL--AAAGKLVFSGSADKTICVWRRDGA 316 (368)
Q Consensus 254 ~~~~l~~~~~dg--------------~i~i~d~~~~~~~~~~~~~~~~~~~~~--~~~~~~l~~~~~dg~i~iw~~~~~ 316 (368)
+++++++++.++ .+++||..+.... ..+.+|...+.++ +|++++|++++.||.|++|+++..
T Consensus 270 ~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~-~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~ 347 (369)
T 3zwl_B 270 LKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIFEEEI-GRVQGHFGPLNTVAISPQGTSYASGGEDGFIRLHHFEKS 347 (369)
T ss_dssp SSSEEEEEECCC-------------CEEEEEETTTCCEE-EEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEEECHH
T ss_pred CCceEEEeecCCCceEEEEecCCCcceeEEEecCCCcch-hheecccCcEEEEEECCCCCEEEEEcCCCeEEEEECccc
Confidence 999999999988 8999999887655 5667787777554 568999999999999999998754
No 103
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.4e-34 Score=267.73 Aligned_cols=246 Identities=18% Similarity=0.251 Sum_probs=199.6
Q ss_pred ecccCCCCCeeEEEEe--CCEEEEEeCCCeEEEEeecCCCccccccCCccccceeeeeccCCCCceeEecccceeeeeec
Q 047325 76 CGFKASSGLVKAIVIS--GEKIFTGHQDGKIRVWKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRH 153 (368)
Q Consensus 76 ~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (368)
..+.+|.+.|++++|+ +++|++|+.||.|++||+.++... ....+.+|
T Consensus 3 ~~l~gH~~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~~~~------------------------------~~~~l~~h 52 (753)
T 3jro_A 3 VIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHK------------------------------LIDTLTGH 52 (753)
T ss_dssp -----CCCCEEEECCCSSSCCEEEEETTTEEEEEEEETTEEE------------------------------EEEEECCC
T ss_pred eecccCcceeEEEEECCCCCeEEEEECCCcEEEEecCCCCCc------------------------------cceeccCC
Confidence 3568999999999998 789999999999999999744211 12234459
Q ss_pred CCCEeEEEEcCC--CCEEEEEeCCCcEEEEEccCCe--EEEEeecCCCceEEEEeCCC--C-eEEEEcCCCeEEEEEcCC
Q 047325 154 SDAVSCMSLDQD--CGLLYTASWDRTFKVWRISDSK--CLESVSAHDDAVNSVVSSSE--G-LIFTGSADGTVKVWKREQ 226 (368)
Q Consensus 154 ~~~v~~~~~~~~--~~~l~~~~~d~~i~iwd~~~~~--~~~~~~~~~~~v~~~~~~~~--~-~l~~~~~dg~i~i~d~~~ 226 (368)
...|++++|+|+ +++|++|+.||.|++||+.+++ .+..+..|...|.+++|+|+ + .+++|+.||.|++||++.
T Consensus 53 ~~~V~~l~~s~~~~~~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~ 132 (753)
T 3jro_A 53 EGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKE 132 (753)
T ss_dssp SSCEEEEEECCTTSCSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCS
T ss_pred cCceEEEEecCCCCCCEEEEEeCCCeEEEEECCCCcccccccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeec
Confidence 999999999987 8999999999999999999987 77788889999999999998 7 999999999999999987
Q ss_pred CCCCcccccceeeccccccEEEEEEcC-------------CCCEEEEecCCCcEEEEeCCCcc---ccceeeeccceEEE
Q 047325 227 HGKGTKHSLAQTLLKQECAVTALVVSS-------------SRSIVYCGSSDGLVNFWEREKQL---SHGGVLKGHKLAVL 290 (368)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~i~~~~~~~-------------~~~~l~~~~~dg~i~i~d~~~~~---~~~~~~~~~~~~~~ 290 (368)
... ........|...|.+++|+| ++++|++|+.||.|++||+++.. .....+.+|...+.
T Consensus 133 ~~~----~~~~~~~~~~~~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~ 208 (753)
T 3jro_A 133 NGT----TSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVR 208 (753)
T ss_dssp SSC----CCCEEEECCSSCEEEEEECCCC---------CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEE
T ss_pred CCC----cceeEeecCCCceEEEEecCcccccccccccCCCCCEEEEEECCCeEEEEeccCCcccceeeeeecCCCCcEE
Confidence 532 23445667889999999999 58999999999999999998654 23345567887775
Q ss_pred EE--EeC---CCEEEEeeCCCeEEEEecCCCcee---eeEeeeccccCeeEEEEecCCeeeecCCcceEEEEEeeCCccc
Q 047325 291 CL--AAA---GKLVFSGSADKTICVWRRDGAIHT---CLSVLTGHTGPVKCLAVEEDRDSSSSTSSCAQRWIVYSGSLDK 362 (368)
Q Consensus 291 ~~--~~~---~~~l~~~~~dg~i~iw~~~~~~~~---~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~w~l~sg~~D~ 362 (368)
++ +|+ +++|++|+.||.|++||+...... .......|...|++++|+|++. .+++|+.||
T Consensus 209 ~l~~sp~~~~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~------------~l~s~s~Dg 276 (753)
T 3jro_A 209 DVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGN------------VLALSGGDN 276 (753)
T ss_dssp EEEECCCCSSSEEEEEEESSSCEEEEEESSSSSCCBCCBSSSSCCSSCCCCEEECTTTC------------CEEEECSSS
T ss_pred EEEeccCCCCCCEEEEEecCCEEEEecCCCCCCcceeEEeccCCCCCceEEEEEcCCCC------------EEEEEcCCC
Confidence 55 456 889999999999999999875322 3334456889999999999999 567777777
Q ss_pred ccccC
Q 047325 363 SDDDV 367 (368)
Q Consensus 363 ~v~i~ 367 (368)
.|++|
T Consensus 277 ~I~vw 281 (753)
T 3jro_A 277 KVTLW 281 (753)
T ss_dssp CEECC
T ss_pred EEEEE
Confidence 77777
No 104
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=100.00 E-value=3.5e-34 Score=246.85 Aligned_cols=250 Identities=16% Similarity=0.257 Sum_probs=199.0
Q ss_pred eeeeccCcCCcEEEEEecC---CEEEEccCCCcEEEEcCCcc---------eecccCCCCCeeEEEEe--C-CEEEEEeC
Q 047325 36 LIGSLVREEGHIYSLAASK---DLLYTGSDSKNIRVWKNLKE---------FCGFKASSGLVKAIVIS--G-EKIFTGHQ 100 (368)
Q Consensus 36 ~~~~~~~h~~~i~~~~~~~---~~l~s~~~dg~i~iw~~~~~---------~~~~~~~~~~v~~~~~~--~-~~l~s~~~ 100 (368)
.+..+.+|.+.|++++|++ ++|++|+.||+|++||+... ...+.+|...|.+++|+ + ++|++++.
T Consensus 73 ~~~~~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~ 152 (402)
T 2aq5_A 73 NVPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGC 152 (402)
T ss_dssp TCCCBCCCSSCEEEEEECTTCTTEEEEEETTSEEEEEECCTTCCSSCBCSCSEEEECCSSCEEEEEECSSBTTEEEEEET
T ss_pred CCceEecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCCCccccCCceEEecCCCCeEEEEEECcCCCCEEEEEcC
Confidence 4456789999999999976 39999999999999998643 55678999999999998 4 58999999
Q ss_pred CCeEEEEeecCCCccccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcCCCCEEEEEeCCCcEEE
Q 047325 101 DGKIRVWKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCGLLYTASWDRTFKV 180 (368)
Q Consensus 101 dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i 180 (368)
||.|++||+++++....... .+|...|.+++|+|++++|++++.|+.|++
T Consensus 153 dg~i~iwd~~~~~~~~~~~~------------------------------~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i 202 (402)
T 2aq5_A 153 DNVILVWDVGTGAAVLTLGP------------------------------DVHPDTIYSVDWSRDGALICTSCRDKRVRV 202 (402)
T ss_dssp TSCEEEEETTTTEEEEEECT------------------------------TTCCSCEEEEEECTTSSCEEEEETTSEEEE
T ss_pred CCEEEEEECCCCCccEEEec------------------------------CCCCCceEEEEECCCCCEEEEEecCCcEEE
Confidence 99999999987754332210 238899999999999999999999999999
Q ss_pred EEccCCeEEEEe-ecCCCc-eEEEEeCCCC-eEEEE---cCCCeEEEEEcCCCCCCcccccceeeccccccEEEEEEcCC
Q 047325 181 WRISDSKCLESV-SAHDDA-VNSVVSSSEG-LIFTG---SADGTVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSSS 254 (368)
Q Consensus 181 wd~~~~~~~~~~-~~~~~~-v~~~~~~~~~-~l~~~---~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 254 (368)
||+++++.+..+ ..|... +.++.|+|++ ++++| +.|+.|++||++.... ........+...+.+++|+|+
T Consensus 203 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~d~~i~iwd~~~~~~----~~~~~~~~~~~~v~~~~~s~~ 278 (402)
T 2aq5_A 203 IEPRKGTVVAEKDRPHEGTRPVHAVFVSEGKILTTGFSRMSERQVALWDTKHLEE----PLSLQELDTSSGVLLPFFDPD 278 (402)
T ss_dssp EETTTTEEEEEEECSSCSSSCCEEEECSTTEEEEEEECTTCCEEEEEEETTBCSS----CSEEEECCCCSSCEEEEEETT
T ss_pred EeCCCCceeeeeccCCCCCcceEEEEcCCCcEEEEeccCCCCceEEEEcCccccC----CceEEeccCCCceeEEEEcCC
Confidence 999999999988 678765 8999999999 77777 7899999999987532 111222356678999999999
Q ss_pred CCEEE-EecCCCcEEEEeCCCccccceeeecc--ceEE--EEEEeCCCEEEEeeCCCeEEEEecCCCceeee
Q 047325 255 RSIVY-CGSSDGLVNFWEREKQLSHGGVLKGH--KLAV--LCLAAAGKLVFSGSADKTICVWRRDGAIHTCL 321 (368)
Q Consensus 255 ~~~l~-~~~~dg~i~i~d~~~~~~~~~~~~~~--~~~~--~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~ 321 (368)
+++|+ +|+.||.|++||++++......+..| ...+ ++++|++.++++ .++.+++|++.....+++
T Consensus 279 ~~~l~~~g~~dg~i~i~d~~~~~~~~~~l~~~~~~~~v~~~~~sp~~~~~~s--~~~~~~~~~l~~~~~~~i 348 (402)
T 2aq5_A 279 TNIVYLCGKGDSSIRYFEITSEAPFLHYLSMFSSKESQRGMGYMPKRGLEVN--KCEIARFYKLHERKCEPI 348 (402)
T ss_dssp TTEEEEEETTCSCEEEEEECSSTTCEEEEEEECCSSCCSEEEECCGGGSCGG--GTEEEEEEEEETTEEEEE
T ss_pred CCEEEEEEcCCCeEEEEEecCCCcceEeecccccCCcccceEEeccccccee--cceeEEEEEcCCCcEEEE
Confidence 99886 56679999999999876423333333 3444 566677777764 567999999987644444
No 105
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=100.00 E-value=3.4e-34 Score=248.84 Aligned_cols=255 Identities=17% Similarity=0.201 Sum_probs=201.6
Q ss_pred cccCCCCCeeEEEEeC---CEEEEEeCCCeEEEEeecCCCccccccCCccccceeeeeccCCCCceeEecccceeeeeec
Q 047325 77 GFKASSGLVKAIVISG---EKIFTGHQDGKIRVWKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRH 153 (368)
Q Consensus 77 ~~~~~~~~v~~~~~~~---~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (368)
....|.+.|++++|+. .+|++++.||.|++|++........... .......+.+|
T Consensus 123 ~~~~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~----------------------~~~~~~~~~~h 180 (430)
T 2xyi_A 123 IKINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSG----------------------ECQPDLRLRGH 180 (430)
T ss_dssp EEEEESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTC----------------------CCCCSEEEECC
T ss_pred EEEcCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccc----------------------cCCCcEEecCC
Confidence 4567999999999983 4899999999999999976422111000 01123345569
Q ss_pred CCCEeEEEEcCCCC-EEEEEeCCCcEEEEEccCCeE-------EEEeecCCCceEEEEeCCC-C-eEEEEcCCCeEEEEE
Q 047325 154 SDAVSCMSLDQDCG-LLYTASWDRTFKVWRISDSKC-------LESVSAHDDAVNSVVSSSE-G-LIFTGSADGTVKVWK 223 (368)
Q Consensus 154 ~~~v~~~~~~~~~~-~l~~~~~d~~i~iwd~~~~~~-------~~~~~~~~~~v~~~~~~~~-~-~l~~~~~dg~i~i~d 223 (368)
...|.+++|+|++. +|++|+.||.|++||+.++.. ...+..|...|.+++|+|+ + .+++++.||.|++||
T Consensus 181 ~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d 260 (430)
T 2xyi_A 181 QKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWD 260 (430)
T ss_dssp SSCCCCEEECTTSTTEEEEECTTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEE
T ss_pred CCCeEEEEeCCCCCCeEEEEeCCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEE
Confidence 99999999999988 999999999999999987322 4566789999999999994 4 899999999999999
Q ss_pred cCCCCCCcccccceeeccccccEEEEEEcCCCC-EEEEecCCCcEEEEeCCCccccceeeeccceEEEEEE--eCC-CEE
Q 047325 224 REQHGKGTKHSLAQTLLKQECAVTALVVSSSRS-IVYCGSSDGLVNFWEREKQLSHGGVLKGHKLAVLCLA--AAG-KLV 299 (368)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~--~~~-~~l 299 (368)
++.... ......+..|...|++++|+|+++ +|++|+.||.|++||+++.......+..|...+.++. |++ .+|
T Consensus 261 ~~~~~~---~~~~~~~~~~~~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~h~~~v~~i~~sp~~~~~l 337 (430)
T 2xyi_A 261 TRNNNT---SKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETIL 337 (430)
T ss_dssp TTCSCS---SSCSEEEECCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEECCSSCEEEEEECSSCTTEE
T ss_pred CCCCCC---CcceeEeecCCCCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCCCCeEEeecCCCCEEEEEECCCCCCEE
Confidence 986531 124455668899999999999887 6889999999999999986666677777887776555 566 479
Q ss_pred EEeeCCCeEEEEecCCCc------------eeeeEeeeccccCeeEEEEecCCeeeecCCcceEEEEEeeCCcccccccC
Q 047325 300 FSGSADKTICVWRRDGAI------------HTCLSVLTGHTGPVKCLAVEEDRDSSSSTSSCAQRWIVYSGSLDKSDDDV 367 (368)
Q Consensus 300 ~~~~~dg~i~iw~~~~~~------------~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~w~l~sg~~D~~v~i~ 367 (368)
++++.||.|++||+.... ...+..+.+|...|++++|+|++. |++++++.|+.|++|
T Consensus 338 ~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~-----------~~l~s~s~dg~i~iw 406 (430)
T 2xyi_A 338 ASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEP-----------WIICSVSEDNIMQVW 406 (430)
T ss_dssp EEEETTSCCEEEEGGGTTCCCCHHHHHHCCTTEEEECCCCSSCEEEEEECSSST-----------TEEEEEETTSEEEEE
T ss_pred EEEeCCCcEEEEeCCCCccccCccccccCCcceEEEcCCCCCCceEEEECCCCC-----------CEEEEEECCCCEEEe
Confidence 999999999999997621 256677788999999999999998 256677777777776
No 106
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=100.00 E-value=3.4e-34 Score=243.03 Aligned_cols=241 Identities=16% Similarity=0.196 Sum_probs=185.9
Q ss_pred cccCCCCCeeEEEEe--CC-EEEEEeC---CCeEEEEeecCCCccccccCCccccceeeeeccCCCCceeEecccceeee
Q 047325 77 GFKASSGLVKAIVIS--GE-KIFTGHQ---DGKIRVWKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALW 150 (368)
Q Consensus 77 ~~~~~~~~v~~~~~~--~~-~l~s~~~---dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (368)
.+.+|...|.+++|+ +. ++++|+. ||.|++||+.+++..... .
T Consensus 13 ~~~~h~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~~~~-------------------------------~ 61 (357)
T 3i2n_A 13 IQKGFNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLKLLR-------------------------------E 61 (357)
T ss_dssp EEEECSSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSSEEEEE-------------------------------E
T ss_pred hccCCCCceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCccccee-------------------------------e
Confidence 456799999999998 44 4456665 999999999876532211 1
Q ss_pred eecCCCEeEEEEcCC---CCEEEEEeCCCcEEEEEccCCe-EEEEeecCCCceEEEE------eCCCC-eEEEEcCCCeE
Q 047325 151 IRHSDAVSCMSLDQD---CGLLYTASWDRTFKVWRISDSK-CLESVSAHDDAVNSVV------SSSEG-LIFTGSADGTV 219 (368)
Q Consensus 151 ~~~~~~v~~~~~~~~---~~~l~~~~~d~~i~iwd~~~~~-~~~~~~~~~~~v~~~~------~~~~~-~l~~~~~dg~i 219 (368)
.+|...|.+++|+|+ +++|++++.||.|++||+.+++ .+..+.+|...|.++. |+|++ .|++++.||.|
T Consensus 62 ~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i 141 (357)
T 3i2n_A 62 IEKAKPIKCGTFGATSLQQRYLATGDFGGNLHIWNLEAPEMPVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTV 141 (357)
T ss_dssp EEESSCEEEEECTTCCTTTCCEEEEETTSCEEEECTTSCSSCSEEECCCSSCEEEEEEESGGGCC-CCCEEEEEETTSCE
T ss_pred ecccCcEEEEEEcCCCCCCceEEEecCCCeEEEEeCCCCCccEEEEEecccceEEEeeccccccCCCccEEEEEeCCCeE
Confidence 248999999999998 6999999999999999999988 8889999999999994 56788 99999999999
Q ss_pred EEEEcCCCCCCcccccceeecccc----ccEEEEE----EcCCCCEEEEecCCCcEEEEeCCCccccceeeeccceEE--
Q 047325 220 KVWKREQHGKGTKHSLAQTLLKQE----CAVTALV----VSSSRSIVYCGSSDGLVNFWEREKQLSHGGVLKGHKLAV-- 289 (368)
Q Consensus 220 ~i~d~~~~~~~~~~~~~~~~~~~~----~~i~~~~----~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~-- 289 (368)
++||++.... ....+..+. ..+.+++ |+|++++|++++.||.|++||+++.... ....|...+
T Consensus 142 ~vwd~~~~~~-----~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~--~~~~~~~~v~~ 214 (357)
T 3i2n_A 142 KVWDPRQKDD-----PVANMEPVQGENKRDCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRNMALR--WETNIKNGVCS 214 (357)
T ss_dssp EEECTTSCSS-----CSEEECCCTTSCCCCEEEEEEECCCC-CCCEEEEEETTSEEEEEETTTTEEE--EEEECSSCEEE
T ss_pred EEEeCCCCCC-----cceeccccCCCCCCceEEEEEEeccCCCCCEEEEEccCCeEEEEECccCcee--eecCCCCceEE
Confidence 9999987632 233343333 3788888 7889999999999999999999987664 334455555
Q ss_pred EEEEe---CCCEEEEeeCCCeEEEEecCCCceeeeE-----eeeccccCeeEEEEecCCe-eeecC--CcceEEEEEee
Q 047325 290 LCLAA---AGKLVFSGSADKTICVWRRDGAIHTCLS-----VLTGHTGPVKCLAVEEDRD-SSSST--SSCAQRWIVYS 357 (368)
Q Consensus 290 ~~~~~---~~~~l~~~~~dg~i~iw~~~~~~~~~~~-----~~~~h~~~v~~l~~~~~~~-~~~~~--~~~~~~w~l~s 357 (368)
++++| ++.+|++|+.||.|++||+... .... .+.+|...|++++|+|++. +++++ ++.+++|.+..
T Consensus 215 ~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~--~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 291 (357)
T 3i2n_A 215 LEFDRKDISMNKLVATSLEGKFHVFDMRTQ--HPTKGFASVSEKAHKSTVWQVRHLPQNRELFLTAGGAGGLHLWKYEY 291 (357)
T ss_dssp EEESCSSSSCCEEEEEESTTEEEEEEEEEE--ETTTEEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEEEEC
T ss_pred EEcCCCCCCCCEEEEECCCCeEEEEeCcCC--CcccceeeeccCCCcCCEEEEEECCCCCcEEEEEeCCCcEEEeecCC
Confidence 45556 7899999999999999998764 2222 3348999999999999998 44443 23455555543
No 107
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=100.00 E-value=1.4e-33 Score=241.55 Aligned_cols=204 Identities=15% Similarity=0.175 Sum_probs=167.1
Q ss_pred eecccCCCCCeeEEEEe--C-CEEEEEeCCCeEEEEeecCCCccccccCCccccceeeeeccCCCCceeEecccceeeee
Q 047325 75 FCGFKASSGLVKAIVIS--G-EKIFTGHQDGKIRVWKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWI 151 (368)
Q Consensus 75 ~~~~~~~~~~v~~~~~~--~-~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (368)
...+.+|...|.+++|+ + ++|++|+.||.|++||+.+++....... .
T Consensus 66 ~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~------------------------------~ 115 (383)
T 3ei3_B 66 HRTASPFDRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKTSFIQG------------------------------M 115 (383)
T ss_dssp EEEECCCSSCEEEEEECSSCTTEEEEEEBTSCEEEEETTSTTCEEEECC------------------------------C
T ss_pred EEeccCCCCCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCcccceeeec------------------------------C
Confidence 34567899999999998 4 7999999999999999987654322211 2
Q ss_pred ecCCCEeEEEEcC-CCCEEEEEeCCCcEEEEEccCCeEEEEeecC---CCceEEEEeCCCC-eEEEEcCCCeEEEEEcCC
Q 047325 152 RHSDAVSCMSLDQ-DCGLLYTASWDRTFKVWRISDSKCLESVSAH---DDAVNSVVSSSEG-LIFTGSADGTVKVWKREQ 226 (368)
Q Consensus 152 ~~~~~v~~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~---~~~v~~~~~~~~~-~l~~~~~dg~i~i~d~~~ 226 (368)
+|...|.+++|+| ++++|++++.|+.|++||+.+ +.+..+..+ ...|.+++|+|++ .|++++.|+.|++||++.
T Consensus 116 ~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~ 194 (383)
T 3ei3_B 116 GPGDAITGMKFNQFNTNQLFVSSIRGATTLRDFSG-SVIQVFAKTDSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGLDG 194 (383)
T ss_dssp STTCBEEEEEEETTEEEEEEEEETTTEEEEEETTS-CEEEEEECCCCSSCCEEEEEEETTTTEEEEEETTSEEEEEETTS
T ss_pred CcCCceeEEEeCCCCCCEEEEEeCCCEEEEEECCC-CceEEEeccCCCCCCeEEEEECCCCCEEEEECCCCCEEEEECCC
Confidence 3899999999999 778999999999999999985 555555544 4789999999999 999999999999999953
Q ss_pred CCCCcccccceeeccccccEEEEEEcCCCC-EEEEecCCCcEEEEeCCCcccc--ceeeeccceEEEE--EEe-CCCEEE
Q 047325 227 HGKGTKHSLAQTLLKQECAVTALVVSSSRS-IVYCGSSDGLVNFWEREKQLSH--GGVLKGHKLAVLC--LAA-AGKLVF 300 (368)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~--~~~~~~~~~~~~~--~~~-~~~~l~ 300 (368)
. ....+..|...|.+++|+|+++ +|++++.|+.|++||+++.... .....+|...+.+ ++| ++++|+
T Consensus 195 ~-------~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~ 267 (383)
T 3ei3_B 195 H-------EIFKEKLHKAKVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKDKNSYIAEMPHEKPVNAAYFNPTDSTKLL 267 (383)
T ss_dssp C-------EEEEEECSSSCEEEEEECSSCTTEEEEEETTSEEEEEEGGGCCSTTCEEEEEECSSCEEEEEECTTTSCEEE
T ss_pred C-------EEEEeccCCCcEEEEEECCCCCCEEEEEeCCCEEEEEeCCCCCcccceEEEecCCCceEEEEEcCCCCCEEE
Confidence 2 5667778999999999999999 9999999999999999873211 1122257666654 556 789999
Q ss_pred EeeCCCeEEEEecCCC
Q 047325 301 SGSADKTICVWRRDGA 316 (368)
Q Consensus 301 ~~~~dg~i~iw~~~~~ 316 (368)
+++.|+.|++||+.+.
T Consensus 268 ~~~~d~~i~iwd~~~~ 283 (383)
T 3ei3_B 268 TTDQRNEIRVYSSYDW 283 (383)
T ss_dssp EEESSSEEEEEETTBT
T ss_pred EEcCCCcEEEEECCCC
Confidence 9999999999999765
No 108
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=100.00 E-value=1e-34 Score=248.95 Aligned_cols=226 Identities=11% Similarity=0.073 Sum_probs=164.8
Q ss_pred CCEEEEEeCCCeEEEEeecCCCccccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcC-------
Q 047325 92 GEKIFTGHQDGKIRVWKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQ------- 164 (368)
Q Consensus 92 ~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~------- 164 (368)
+.+|++++.|++|++||.++++...... ...+.+|.+.|++++|+|
T Consensus 101 ~~~las~~~d~~v~lw~~~~~~~~~~~~---------------------------~~~~~gH~~~v~~v~~~p~~~~~~~ 153 (393)
T 4gq1_A 101 SLFLACVCQDNTVRLIITKNETIITQHV---------------------------LGGKSGHHNFVNDIDIADVYSADNR 153 (393)
T ss_dssp EEEEEEEETTSCEEEEEEETTEEEEEEE---------------------------ECTTTSCSSCEEEEEEEEEECTTCS
T ss_pred CCEEEEEeCCCcEEEEECCCCccceeee---------------------------ecccCCCCCceEEEEEccccccccC
Confidence 4579999999999999998775322111 112345999999999997
Q ss_pred -CCCEEEEEeCCCcEEEEEccCCeEEEEeecCCCceEEEEeCCCC--eEEEEcCCCeEEEEEcCCCCCCcccc-------
Q 047325 165 -DCGLLYTASWDRTFKVWRISDSKCLESVSAHDDAVNSVVSSSEG--LIFTGSADGTVKVWKREQHGKGTKHS------- 234 (368)
Q Consensus 165 -~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~--~l~~~~~dg~i~i~d~~~~~~~~~~~------- 234 (368)
++++|++++.|++|+|||+.++.++..+..|...+.+++|+|++ +|++++.|+.|++||++.........
T Consensus 154 ~d~~~las~s~D~tv~~Wd~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~ 233 (393)
T 4gq1_A 154 LAEQVIASVGDDCTLIIWRLTDEGPILAGYPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKN 233 (393)
T ss_dssp EEEEEEEEEETTSEEEEEEEETTEEEEEEEECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------CSC
T ss_pred CCCCEEEEEECCCeEEEEECCCCceeeeecCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCccc
Confidence 78899999999999999999999888888999999999999987 79999999999999998754311100
Q ss_pred ------------cceeeccccccEEEEEEc-CCCCEEEEecCCCcEEEEeCCCccccceeeeccceEE------------
Q 047325 235 ------------LAQTLLKQECAVTALVVS-SSRSIVYCGSSDGLVNFWEREKQLSHGGVLKGHKLAV------------ 289 (368)
Q Consensus 235 ------------~~~~~~~~~~~i~~~~~~-~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~------------ 289 (368)
......+|...+.++.|+ |+++.|++++.|+.+++||+...... ..+..|...+
T Consensus 234 ~~~~s~~~~~~~~~~~~~~~~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~~~-~~l~~~~~~~~~~~~~~~~~~~ 312 (393)
T 4gq1_A 234 PWLLTLNTLPLVNTCHSSGIASSLANVRWIGSDGSGILAMCKSGAWLRWNLFANNDY-NEISDSTMKLGPKNLLPNVQGI 312 (393)
T ss_dssp CCSEEEESGGGC------CCSSSCSEEEEETTTTCEEEEECTTSEEEEEEC--------------------CCSCSEEEE
T ss_pred ceEEecccccceeeeecccccccceeeeeecCCCCEEEEEeCCCCEEEEECccCCCC-ceEeeecCccccEEEccccccc
Confidence 011123566778888886 79999999999999999998765433 1222222211
Q ss_pred --------EEEEe--CCCEEEEeeCCCeEEEEecCCCceeeeEeeeccccCeeEEEEecCCeeeecCC
Q 047325 290 --------LCLAA--AGKLVFSGSADKTICVWRRDGAIHTCLSVLTGHTGPVKCLAVEEDRDSSSSTS 347 (368)
Q Consensus 290 --------~~~~~--~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~ 347 (368)
..+.+ ++.++++|+.||.|++||+.++ .....+.+|..+|++++|+|||++||+++
T Consensus 313 ~~~~~~~~~~~~~~~~~~~~~sgs~Dg~V~lwd~~~~--~~~~~~~~~~~~V~svafspdG~~LA~as 378 (393)
T 4gq1_A 313 SLFPSLLGACPHPRYMDYFATAHSQHGLIQLINTYEK--DSNSIPIQLGMPIVDFCWHQDGSHLAIAT 378 (393)
T ss_dssp CSSCCSSCCEECSSCTTEEEEEETTTTEEEEEETTCT--TCCEEEEECSSCEEEEEECTTSSEEEEEE
T ss_pred cccCcceeEEEccCCCCEEEEEECCCCEEEEEECCCC--cEEEEecCCCCcEEEEEEcCCCCEEEEEe
Confidence 12222 3457788899999999999876 45566778999999999999999555443
No 109
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=100.00 E-value=9.5e-33 Score=230.33 Aligned_cols=248 Identities=20% Similarity=0.301 Sum_probs=203.6
Q ss_pred ccCCCceeeec--cCcCCcEEEEEecCC--EEEEccCCCcEEEEcCCc--ceecccCCCCCeeEEEEeCCEEEEEeCCCe
Q 047325 30 NLPQNGLIGSL--VREEGHIYSLAASKD--LLYTGSDSKNIRVWKNLK--EFCGFKASSGLVKAIVISGEKIFTGHQDGK 103 (368)
Q Consensus 30 ~~~~~~~~~~~--~~h~~~i~~~~~~~~--~l~s~~~dg~i~iw~~~~--~~~~~~~~~~~v~~~~~~~~~l~s~~~dg~ 103 (368)
+...++.+..+ .+|...|++++|+++ +|++|+.||+|++||+.+ .+..+.+|...+.++.+.+..+++++.++.
T Consensus 51 d~~tg~~~~~~~~~~~~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~~~~~~~~~~h~~~~~~~~~~~~~l~s~~~~~~ 130 (318)
T 4ggc_A 51 SASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWNSYILSSGSRSGH 130 (318)
T ss_dssp ETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEETTEEEEEETTSE
T ss_pred ECCCCCEEEEEEecCCCCeEEEEEECCCCCEEEEEECCCcEEEeecCCceeEEEecCccceEEEeecCCCEEEEEecCCc
Confidence 45566666655 477888999999755 999999999999999875 456788999999999999999999999999
Q ss_pred EEEEeecCCCccccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcCCCCEEEEEeCCCcEEEEEc
Q 047325 104 IRVWKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCGLLYTASWDRTFKVWRI 183 (368)
Q Consensus 104 i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~ 183 (368)
+++|+....... ...+.+|...+..+.+.+++++|++++.|+.|++||+
T Consensus 131 ~~~~~~~~~~~~-------------------------------~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~ 179 (318)
T 4ggc_A 131 IHHHDVRVAEHH-------------------------------VATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPS 179 (318)
T ss_dssp EEEEETTSSSCE-------------------------------EEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEES
T ss_pred eEeeecCCCcee-------------------------------EEEEcCccCceEEEEEcCCCCEEEEEecCcceeEEEC
Confidence 999998765432 2234459999999999999999999999999999999
Q ss_pred cCCeE----EEEeecCCCceEEEEeCCCC----eEEEEcCCCeEEEEEcCCCCCCcccccceeeccccccEEEEEEcCCC
Q 047325 184 SDSKC----LESVSAHDDAVNSVVSSSEG----LIFTGSADGTVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSSSR 255 (368)
Q Consensus 184 ~~~~~----~~~~~~~~~~v~~~~~~~~~----~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 255 (368)
++++. ......+...|.++.+.|++ .+++++.++.|++||.+... ......+...+..+.|+|++
T Consensus 180 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~-------~~~~~~~~~~v~~~~~~~~~ 252 (318)
T 4ggc_A 180 APGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGA-------CLSAVDAHSQVCSILWSPHY 252 (318)
T ss_dssp SCBTTBSCCSEEECCCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTCC-------EEEEEECSSCEEEEEEETTT
T ss_pred CCCcccccceeeecccCCceEEEEecCCCCcEEEEEecCCCCEEEEEeccccc-------ccccccceeeeeeeeecccc
Confidence 87653 34555678899999999877 34567889999999998652 23344567789999999999
Q ss_pred CEEEEe--cCCCcEEEEeCCCccccceeeeccceEEEEE--EeCCCEEEEeeCCCeEEEEecCCC
Q 047325 256 SIVYCG--SSDGLVNFWEREKQLSHGGVLKGHKLAVLCL--AAAGKLVFSGSADKTICVWRRDGA 316 (368)
Q Consensus 256 ~~l~~~--~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~--~~~~~~l~~~~~dg~i~iw~~~~~ 316 (368)
+.++++ +.|+.|++||+++++.. ..+.+|...|.++ +|++++|++|+.||+|+|||+...
T Consensus 253 ~~~~~~sg~~d~~i~iwd~~~~~~~-~~l~gH~~~V~~l~~spdg~~l~S~s~D~~v~iWd~~~~ 316 (318)
T 4ggc_A 253 KELISGHGFAQNQLVIWKYPTMAKV-AELKGHTSRVLSLTMSPDGATVASAAADETLRLWRCFEL 316 (318)
T ss_dssp TEEEEEECTTTCCEEEEETTTCCEE-EEECCCSSCEEEEEECTTSSCEEEEETTTEEEEECCSCC
T ss_pred cceEEEEEcCCCEEEEEECCCCcEE-EEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEECCCC
Confidence 987765 47999999999987665 5678898888655 468999999999999999998653
No 110
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.5e-33 Score=244.96 Aligned_cols=228 Identities=13% Similarity=0.111 Sum_probs=180.7
Q ss_pred CCCCeeEEEEe--CCEE-EEEeCCCeEEEEeec--CCCccccccCCccccceeeeeccCCCCceeEecccceeeeeecCC
Q 047325 81 SSGLVKAIVIS--GEKI-FTGHQDGKIRVWKIS--PKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSD 155 (368)
Q Consensus 81 ~~~~v~~~~~~--~~~l-~s~~~dg~i~vw~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (368)
|.+.|.+++|+ +.+| ++++.||.|++||+. +++...... ...|..
T Consensus 101 ~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~------------------------------~~~~~~ 150 (450)
T 2vdu_B 101 IYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRK------------------------------RFCFSK 150 (450)
T ss_dssp CCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEE------------------------------EEECSS
T ss_pred cCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeee------------------------------cccCCC
Confidence 44479999998 6775 899999999999998 554222111 013778
Q ss_pred CEeEEEEcCCCCEEEEEeCCCcEEEEEccCCeEEE----EeecCCCceEEEEeCCC---C-eEEEEcCCCeEEEEEcCCC
Q 047325 156 AVSCMSLDQDCGLLYTASWDRTFKVWRISDSKCLE----SVSAHDDAVNSVVSSSE---G-LIFTGSADGTVKVWKREQH 227 (368)
Q Consensus 156 ~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~----~~~~~~~~v~~~~~~~~---~-~l~~~~~dg~i~i~d~~~~ 227 (368)
.|.+++|+|++++|++++.+|.|++|++.+++... .+.+|...|.+++|+|+ + +|++++.|+.|++||++..
T Consensus 151 ~v~~~~~sp~~~~l~~~~~~g~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~ 230 (450)
T 2vdu_B 151 RPNAISIAEDDTTVIIADKFGDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQC 230 (450)
T ss_dssp CEEEEEECTTSSEEEEEETTSEEEEEETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCT
T ss_pred CceEEEEcCCCCEEEEEeCCCcEEEEecCCcccccccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCC
Confidence 99999999999999999999999999998877554 77889999999999999 8 9999999999999999865
Q ss_pred CCCccccccee-eccccccEEEEEEcCCCCEEEEecCCCcEEEEeCCCccccceeeec----------------------
Q 047325 228 GKGTKHSLAQT-LLKQECAVTALVVSSSRSIVYCGSSDGLVNFWEREKQLSHGGVLKG---------------------- 284 (368)
Q Consensus 228 ~~~~~~~~~~~-~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~---------------------- 284 (368)
. .... ..+|...|.+++|+ ++++|++++.|+.|++||+++++........
T Consensus 231 ~------~~~~~~~~h~~~v~~~~~s-d~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 303 (450)
T 2vdu_B 231 F------IVDKWLFGHKHFVSSICCG-KDYLLLSAGGDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENN 303 (450)
T ss_dssp T------CEEEECCCCSSCEEEEEEC-STTEEEEEESSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC---------
T ss_pred c------eeeeeecCCCCceEEEEEC-CCCEEEEEeCCCeEEEEECCCCcEeeeecchhhhhhhhhhccccccccccccc
Confidence 3 2333 55789999999999 9999999999999999999987654322211
Q ss_pred --cceEE--EEEEeCCCEEEEee-CCCeEEEEec--CC-CceeeeEeeeccccCeeEEEEecCCeeeecC
Q 047325 285 --HKLAV--LCLAAAGKLVFSGS-ADKTICVWRR--DG-AIHTCLSVLTGHTGPVKCLAVEEDRDSSSST 346 (368)
Q Consensus 285 --~~~~~--~~~~~~~~~l~~~~-~dg~i~iw~~--~~-~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~ 346 (368)
....+ +++++++++|++++ .|+.|++|++ .. .....+..+..| ..|.+++|+|++.+++.+
T Consensus 304 ~~~~~~v~~i~~~~~~~~l~~~~~~d~~i~iw~~~~~~~~~l~~~~~~~~~-~~v~~~~~~~~~~~v~~~ 372 (450)
T 2vdu_B 304 DIIEFAVSKIIKSKNLPFVAFFVEATKCIIILEMSEKQKGDLALKQIITFP-YNVISLSAHNDEFQVTLD 372 (450)
T ss_dssp -CBCCCEEEEEECSSSSEEEEEETTCSEEEEEEECSSSTTCEEEEEEEECS-SCEEEEEEETTEEEEEEC
T ss_pred ccceEEEEEEEEeCCCCEEEEEECCCCeEEEEEeccCCCCceeeccEeccC-CceEEEEecCCcEEEEEe
Confidence 11223 45667899999998 8999999999 32 233667777777 889999999976655543
No 111
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=100.00 E-value=1.4e-33 Score=246.68 Aligned_cols=248 Identities=14% Similarity=0.231 Sum_probs=187.1
Q ss_pred cCCCCCeeEEEEe--CCEEEEEeCCCeEEEEeecCCCccccccCCccccceeeeeccCCCCceeEecccceeeeeecC--
Q 047325 79 KASSGLVKAIVIS--GEKIFTGHQDGKIRVWKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHS-- 154 (368)
Q Consensus 79 ~~~~~~v~~~~~~--~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 154 (368)
..+.+.|.+++|+ +++|++|+.||.|++||+.+++......... ......+.+|.
T Consensus 25 ~~~~~~V~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~---------------------~~~~~~~~~h~~~ 83 (447)
T 3dw8_B 25 VAEADIISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQSHSRGE---------------------YNVYSTFQSHEPE 83 (447)
T ss_dssp CCGGGSEEEEEECSSSSEEEEEETTSEEEEEEECC-----CCCCCC---------------------EEEEEEEECCCCE
T ss_pred ccccCcEEEEEECCCCCEEEEEcCCCeEEEEEecCCCCCCcccccc---------------------eeEeccccccccc
Confidence 3467899999998 7899999999999999998765321111100 00122344576
Q ss_pred ----------CCEeEEEEcCCC--CEEEEEeCCCcEEEEEccCCeEE---------------------------------
Q 047325 155 ----------DAVSCMSLDQDC--GLLYTASWDRTFKVWRISDSKCL--------------------------------- 189 (368)
Q Consensus 155 ----------~~v~~~~~~~~~--~~l~~~~~d~~i~iwd~~~~~~~--------------------------------- 189 (368)
..|++++|+|++ .+|++++.|+.|++||+.+++..
T Consensus 84 ~~~~~~~~~~~~V~~l~~~~~~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 163 (447)
T 3dw8_B 84 FDYLKSLEIEEKINKIRWLPQKNAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLM 163 (447)
T ss_dssp EEGGGTEEECCCCCEEEECCCCSSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEE
T ss_pred ccccccccccCceEEEEEcCCCCcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchhee
Confidence 889999999998 79999999999999999765432
Q ss_pred ------EE-eecCCCceEEEEeCCCC-eEEEEcCCCeEEEEEcCCCCCCcccccce-------eeccccccEEEEEEcCC
Q 047325 190 ------ES-VSAHDDAVNSVVSSSEG-LIFTGSADGTVKVWKREQHGKGTKHSLAQ-------TLLKQECAVTALVVSSS 254 (368)
Q Consensus 190 ------~~-~~~~~~~v~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~-------~~~~~~~~i~~~~~~~~ 254 (368)
.. ..+|...|.+++|+|++ +|++| .|+.|++||++.... ... .+..|...|.+++|+|+
T Consensus 164 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~-----~~~~~~~~~~~~~~~~~~v~~~~~~p~ 237 (447)
T 3dw8_B 164 VEASPRRIFANAHTYHINSISINSDYETYLSA-DDLRINLWHLEITDR-----SFNIVDIKPANMEELTEVITAAEFHPN 237 (447)
T ss_dssp EEEEEEEEECSCCSSCCCEEEECTTSSEEEEE-CSSEEEEEETTEEEE-----EEEEEECCCSSGGGCCCCEEEEEECSS
T ss_pred eeccceEEeccCCCcceEEEEEcCCCCEEEEe-CCCeEEEEECCCCCc-----eeeeeecccccccccCcceEEEEECCC
Confidence 12 35799999999999999 88888 899999999984321 111 35678899999999999
Q ss_pred C-CEEEEecCCCcEEEEeCCCcccc---ceeeeccce------------EE--EEEEeCCCEEEEeeCCCeEEEEecCCC
Q 047325 255 R-SIVYCGSSDGLVNFWEREKQLSH---GGVLKGHKL------------AV--LCLAAAGKLVFSGSADKTICVWRRDGA 316 (368)
Q Consensus 255 ~-~~l~~~~~dg~i~i~d~~~~~~~---~~~~~~~~~------------~~--~~~~~~~~~l~~~~~dg~i~iw~~~~~ 316 (368)
+ ++|++|+.||.|++||++++... ...+..|.. .+ ++++|++++|++++. +.|++||+...
T Consensus 238 ~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~v~iwd~~~~ 316 (447)
T 3dw8_B 238 SCNTFVYSSSKGTIRLCDMRASALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY-LSVKVWDLNME 316 (447)
T ss_dssp CTTEEEEEETTSCEEEEETTTCSSSCTTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEES-SEEEEEETTCC
T ss_pred CCcEEEEEeCCCeEEEEECcCCccccceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeC-CeEEEEeCCCC
Confidence 8 99999999999999999986641 345555543 44 556678999999999 99999999762
Q ss_pred ceeeeEeeeccccC---------------eeEEEEecCCeeeecCCcceEEEEEeeCCcccccccC
Q 047325 317 IHTCLSVLTGHTGP---------------VKCLAVEEDRDSSSSTSSCAQRWIVYSGSLDKSDDDV 367 (368)
Q Consensus 317 ~~~~~~~~~~h~~~---------------v~~l~~~~~~~~~~~~~~~~~~w~l~sg~~D~~v~i~ 367 (368)
..++..+.+|... +..++|+|++. .|++|+.||.|++|
T Consensus 317 -~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~s~~~~------------~l~s~s~dg~v~iw 369 (447)
T 3dw8_B 317 -NRPVETYQVHEYLRSKLCSLYENDCIFDKFECCWNGSDS------------VVMTGSYNNFFRMF 369 (447)
T ss_dssp -SSCSCCEESCGGGTTTHHHHHHTSGGGCCCCEEECTTSS------------EEEEECSTTEEEEE
T ss_pred -ccccceeeccccccccccccccccccccceEEEECCCCC------------EEEEeccCCEEEEE
Confidence 2567778778642 33499999999 56677777777766
No 112
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=100.00 E-value=6.8e-33 Score=233.65 Aligned_cols=246 Identities=14% Similarity=0.163 Sum_probs=189.9
Q ss_pred cccCCCCCeeEEEEe--CCEEEEEeCCCeEEEEeecCCCccccccCCccccceeeeeccCCCCceeEecccceeeeeecC
Q 047325 77 GFKASSGLVKAIVIS--GEKIFTGHQDGKIRVWKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHS 154 (368)
Q Consensus 77 ~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (368)
...+|.+.|.+++|+ +++|++++.||.|++|++.++.... ......+|.
T Consensus 6 ~~~~h~~~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~~~-----------------------------~~~~~~~~~ 56 (342)
T 1yfq_A 6 IEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNV-----------------------------DLLQSLRYK 56 (342)
T ss_dssp CSSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEE-----------------------------EEEEEEECS
T ss_pred cccCCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCCccc-----------------------------cceeeeecC
Confidence 345899999999998 7899999999999999998765211 011233599
Q ss_pred CCEeEEEEcCCCC-EEEEEeCCCcEEEEEc-cCCeEEEEeec--CCCceEEEEeCCCCeEEEEcCCCeEEEEEcCCCCCC
Q 047325 155 DAVSCMSLDQDCG-LLYTASWDRTFKVWRI-SDSKCLESVSA--HDDAVNSVVSSSEGLIFTGSADGTVKVWKREQHGKG 230 (368)
Q Consensus 155 ~~v~~~~~~~~~~-~l~~~~~d~~i~iwd~-~~~~~~~~~~~--~~~~v~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~ 230 (368)
..|.+++|+|+++ +|++++.||.|++||+ .+++. ..+.+ |...|.+++|+|...+++++.|+.|++||++.....
T Consensus 57 ~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~-~~~~~~~~~~~v~~l~~~~~~~l~s~~~d~~i~iwd~~~~~~~ 135 (342)
T 1yfq_A 57 HPLLCCNFIDNTDLQIYVGTVQGEILKVDLIGSPSF-QALTNNEANLGICRICKYGDDKLIAASWDGLIEVIDPRNYGDG 135 (342)
T ss_dssp SCEEEEEEEESSSEEEEEEETTSCEEEECSSSSSSE-EECBSCCCCSCEEEEEEETTTEEEEEETTSEEEEECHHHHTTB
T ss_pred CceEEEEECCCCCcEEEEEcCCCeEEEEEeccCCce-EeccccCCCCceEEEEeCCCCEEEEEcCCCeEEEEcccccccc
Confidence 9999999999999 9999999999999999 77765 67778 999999999999339999999999999999751000
Q ss_pred c---ccccceeeccccccEEEEEEcCCCCEEEEecCCCcEEEEeCCC-cccc-ceeeeccceEE--EEEEe-CCCEEEEe
Q 047325 231 T---KHSLAQTLLKQECAVTALVVSSSRSIVYCGSSDGLVNFWEREK-QLSH-GGVLKGHKLAV--LCLAA-AGKLVFSG 302 (368)
Q Consensus 231 ~---~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~-~~~~-~~~~~~~~~~~--~~~~~-~~~~l~~~ 302 (368)
. ...+...+. +...+.+++|+|++ +++++.|+.|++||+++ .... ......|...+ ++++| +++++++|
T Consensus 136 ~~~~~~~~~~~~~-~~~~v~~~~~~~~~--l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~ 212 (342)
T 1yfq_A 136 VIAVKNLNSNNTK-VKNKIFTMDTNSSR--LIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACS 212 (342)
T ss_dssp CEEEEESCSSSSS-SCCCEEEEEECSSE--EEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEE
T ss_pred cccccCCeeeEEe-eCCceEEEEecCCc--EEEEeCCCeEEEEECCccccccceeeecCCCCceeEEEECCCCCCEEEEE
Confidence 0 011233333 78899999999887 99999999999999987 4432 22333455555 45567 88999999
Q ss_pred eCCCeEEEEecCCC--c--eeeeEeeecccc---------CeeEEEEecCCeeeecCCcceEEEEEeeCCcccccccC
Q 047325 303 SADKTICVWRRDGA--I--HTCLSVLTGHTG---------PVKCLAVEEDRDSSSSTSSCAQRWIVYSGSLDKSDDDV 367 (368)
Q Consensus 303 ~~dg~i~iw~~~~~--~--~~~~~~~~~h~~---------~v~~l~~~~~~~~~~~~~~~~~~w~l~sg~~D~~v~i~ 367 (368)
+.||.|++|+++.. . ......+..|.. +|++++|+|++.+ |++|+.||.|++|
T Consensus 213 ~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~------------l~~~~~dg~i~vw 278 (342)
T 1yfq_A 213 SIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKF------------LYTAGSDGIISCW 278 (342)
T ss_dssp ETTSEEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCC------------EEEEETTSCEEEE
T ss_pred ecCCcEEEEEEcCCCcccccccceeeecccccccccccceeEEEEEEcCCCCE------------EEEecCCceEEEE
Confidence 99999999999764 1 245666777755 9999999999994 4555555555554
No 113
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=100.00 E-value=1.2e-32 Score=222.76 Aligned_cols=285 Identities=13% Similarity=0.098 Sum_probs=193.2
Q ss_pred CceeeeccCcCCc----EEEEEec----CC-EEEEccCCCcEEEEcCCcc-----eecccCCCCCeeEEEEeC---CEEE
Q 047325 34 NGLIGSLVREEGH----IYSLAAS----KD-LLYTGSDSKNIRVWKNLKE-----FCGFKASSGLVKAIVISG---EKIF 96 (368)
Q Consensus 34 ~~~~~~~~~h~~~----i~~~~~~----~~-~l~s~~~dg~i~iw~~~~~-----~~~~~~~~~~v~~~~~~~---~~l~ 96 (368)
-+++..++.-.+. +.++-|. .+ -++++++ ..|++|+.... +..++.|..+|..+.+.+ +.+.
T Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~lw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 103 (356)
T 2w18_A 25 LQLVSELKNPSGSCSVDVSAMFWERAGCKEPCIITACE-DVVSLWKALDAWQWEKLYTWHFAEVPVLQIVPVPDVYNLVC 103 (356)
T ss_dssp EEEEEEECCCCSSCEEEEEEEEEC----CEEEEEEEES-SEEEEEEESSSSBEEEEEEEECCSSCEEEECCCTTCCSCEE
T ss_pred eeeeehhcCCCCCeEEEEeeeeeccCCCCccEEEEecc-ceEEEcccCCCccceeeEEEeccCceeEEEEEcCcccceee
Confidence 3556666655544 4444443 22 5666664 68999997754 567788999999999873 2222
Q ss_pred EEeCCCe-EEEEeecCCCccccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcCCCCEEEEEe--
Q 047325 97 TGHQDGK-IRVWKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCGLLYTAS-- 173 (368)
Q Consensus 97 s~~~dg~-i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-- 173 (368)
.+-.+=. -.++.+.-...-.. ......-.+|...|..+ ++++++.+++
T Consensus 104 ~~~~~~~~~~v~sla~spd~~~--------------------------~~~~l~s~g~~~~v~~l---~~g~lv~ss~~g 154 (356)
T 2w18_A 104 VALGNLEIREIRALFCSSDDES--------------------------EKQVLLKSGNIKAVLGL---TKRRLVSSSGTL 154 (356)
T ss_dssp EEECSSSEEEEEEECC--------------------------------CCEEEEEEEEEEEEEEE---TTTEEEEEESSS
T ss_pred eeeccccccceEEEEECCCccc--------------------------cccEEEeCCCeEEEEec---CCCcEEEecccC
Confidence 2221111 11121111000000 00000112244445444 5665555543
Q ss_pred CCCcEEEEEc-cCCeEEEEeecCCCceEEEEeCC---CC-eEEEEcCCCeEEEEEcCCCCCCcccccceeecccc---cc
Q 047325 174 WDRTFKVWRI-SDSKCLESVSAHDDAVNSVVSSS---EG-LIFTGSADGTVKVWKREQHGKGTKHSLAQTLLKQE---CA 245 (368)
Q Consensus 174 ~d~~i~iwd~-~~~~~~~~~~~~~~~v~~~~~~~---~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~---~~ 245 (368)
.|+.|++|++ .+++.+..+..|...+..++|++ ++ .|++++.|++|++||++++. .+..+.+|. ..
T Consensus 155 ~d~~V~~~~~s~dG~~~~s~~~~~~~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TGk------~l~tL~g~~~~v~~ 228 (356)
T 2w18_A 155 SDQQVEVMTFAEDGGGKENQFLMPPEETILTFAEVQGMQEALLGTTIMNNIVIWNLKTGQ------LLKKMHIDDSYQAS 228 (356)
T ss_dssp TTCEEEEEEECTTSCEEEEEEECCCSSCEEEEEEEETSTTEEEEEETTSEEEEEETTTCC------EEEEEECCC---CC
T ss_pred CCCcEEEEEECCCCceeeeeccCCCceeeEEeeccCCCCceEEEecCCCcEEEEECCCCc------EEEEEcCCCcceee
Confidence 5999999999 55888899999999999999988 55 99999999999999998763 455555433 46
Q ss_pred EEEEEEcCCCCEE------------EEecCCCcEEEEeCCCcccccee----eeccceEEEEEEeCCCEEEEeeCCCeEE
Q 047325 246 VTALVVSSSRSIV------------YCGSSDGLVNFWEREKQLSHGGV----LKGHKLAVLCLAAAGKLVFSGSADKTIC 309 (368)
Q Consensus 246 i~~~~~~~~~~~l------------~~~~~dg~i~i~d~~~~~~~~~~----~~~~~~~~~~~~~~~~~l~~~~~dg~i~ 309 (368)
+.+++|+|+++++ ++|+.|++|++||..+++..... ..+|....++.+.++.++++|+.|++|+
T Consensus 229 v~~vafSpdG~~lvs~s~~~~~w~laSGs~D~tIklWd~~tgk~l~v~~~~~p~Gh~~~~lsg~~sg~~lASgS~DgTIk 308 (356)
T 2w18_A 229 VCHKAYSEMGLLFIVLSHPCAKESESLRSPVFQLIVINPKTTLSVGVMLYCLPPGQAGRFLEGDVKDHCAAAILTSGTIA 308 (356)
T ss_dssp CEEEEEEETTEEEEEEC------------CCEEEEEEETTTTEEEEEEEECCCTTCCCCEEEEEEETTEEEEEETTSCEE
T ss_pred eEEEEECCCCCEEEEeccCCCcceeeccCCCcEEEEEECCCCEEEEEEEeeccCCCcceeEccccCCCEEEEEcCCCcEE
Confidence 7788999999876 56788999999999987654322 2366656666677789999999999999
Q ss_pred EEecCCCceeeeEeeeccccCee-EEEEecCCeeeecCCcceEEEEEeeCCcccccccCC
Q 047325 310 VWRRDGAIHTCLSVLTGHTGPVK-CLAVEEDRDSSSSTSSCAQRWIVYSGSLDKSDDDVH 368 (368)
Q Consensus 310 iw~~~~~~~~~~~~~~~h~~~v~-~l~~~~~~~~~~~~~~~~~~w~l~sg~~D~~v~i~h 368 (368)
|||+.++ +++.++.+|...+. .++|+|||+ .|++|+.|++||||+
T Consensus 309 IWDl~tG--k~l~tL~gH~~~vvs~vafSPDG~------------~LaSGS~D~TIklWd 354 (356)
T 2w18_A 309 IWDLLLG--QCTALLPPVSDQHWSFVKWSGTDS------------HLLAGQKDGNIFVYH 354 (356)
T ss_dssp EEETTTC--SEEEEECCC--CCCCEEEECSSSS------------EEEEECTTSCEEEEE
T ss_pred EEECCCC--cEEEEecCCCCCeEEEEEECCCCC------------EEEEEECCCcEEEec
Confidence 9999887 78888999988655 689999999 799999999999994
No 114
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=100.00 E-value=1e-31 Score=231.84 Aligned_cols=277 Identities=16% Similarity=0.173 Sum_probs=184.2
Q ss_pred cCcCCcEEEEEecC---CEEEEccCCCcEEEEcCCccee-cccCCCCCeeEEEEe-----CCEEEEEeCCCeEEEEeecC
Q 047325 41 VREEGHIYSLAASK---DLLYTGSDSKNIRVWKNLKEFC-GFKASSGLVKAIVIS-----GEKIFTGHQDGKIRVWKISP 111 (368)
Q Consensus 41 ~~h~~~i~~~~~~~---~~l~s~~~dg~i~iw~~~~~~~-~~~~~~~~v~~~~~~-----~~~l~s~~~dg~i~vw~~~~ 111 (368)
.+|.+.|.+++|++ .+|++++.||.|++||+..... ....+...+.++.+. +.++++++.||.|++||+.+
T Consensus 96 ~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~ 175 (408)
T 4a11_B 96 DVHRYSVETVQWYPHDTGMFTSSSFDKTLKVWDTNTLQTADVFNFEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKS 175 (408)
T ss_dssp TCCSSCEEEEEECTTCTTCEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSS
T ss_pred ccCCCcEEEEEEccCCCcEEEEEeCCCeEEEeeCCCCccceeccCCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCC
Confidence 46999999999976 3899999999999999875422 233477888999887 34899999999999999987
Q ss_pred CCccccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcCCCC-EEEEEeCCCcEEEEEccCCe-EE
Q 047325 112 KNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCG-LLYTASWDRTFKVWRISDSK-CL 189 (368)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~i~iwd~~~~~-~~ 189 (368)
++... .+.+|...|.+++|+|+++ +|++++.||.|++||++++. ++
T Consensus 176 ~~~~~--------------------------------~~~~~~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~ 223 (408)
T 4a11_B 176 GSCSH--------------------------------ILQGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCL 223 (408)
T ss_dssp SCCCE--------------------------------EECCCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCS
T ss_pred cceee--------------------------------eecCCCCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCccc
Confidence 65332 2234889999999999988 58999999999999998765 33
Q ss_pred EEe---------------ecCCCceEEEEeCCCC-eEEEEcCCCeEEEEEcCCCCCCcccccceeeccccccEEEEEEcC
Q 047325 190 ESV---------------SAHDDAVNSVVSSSEG-LIFTGSADGTVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSS 253 (368)
Q Consensus 190 ~~~---------------~~~~~~v~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 253 (368)
..+ ..|...|.+++|+|++ +|++++.||.|++||++.......... .........+.......
T Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 302 (408)
T 4a11_B 224 ITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGTDNRMRLWNSSNGENTLVNYG-KVCNNSKKGLKFTVSCG 302 (408)
T ss_dssp EECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCBCCCCCC-CCCCCCSSCCCCEECCS
T ss_pred ccccccccccceeeccccccccCceeEEEEcCCCCEEEEecCCCeEEEEECCCCccceeccc-cccccccccceeEEecC
Confidence 333 5688899999999999 999999999999999987643111100 00111111222222233
Q ss_pred CCCEEEEecCCCcEEEEeCCCccccceeeeccceEE--EEEEeCCCEEEEeeCCCeEEEEecCCCceeeeEeeeccccCe
Q 047325 254 SRSIVYCGSSDGLVNFWEREKQLSHGGVLKGHKLAV--LCLAAAGKLVFSGSADKTICVWRRDGAIHTCLSVLTGHTGPV 331 (368)
Q Consensus 254 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v 331 (368)
....+++++.++.|++||+.++... ..+.+|...+ ++++|++++|++|+.||.|++||++.. +.+.....+.
T Consensus 303 ~~~~~~~~~~~~~i~v~d~~~~~~~-~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~--~~~~~~~~~~--- 376 (408)
T 4a11_B 303 CSSEFVFVPYGSTIAVYTVYSGEQI-TMLKGHYKTVDCCVFQSNFQELYSGSRDCNILAWVPSLY--EPVPDDDETT--- 376 (408)
T ss_dssp SSSCEEEEEETTEEEEEETTTCCEE-EEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEEECC----------------
T ss_pred CCceEEEEecCCEEEEEECcCCcce-eeeccCCCeEEEEEEcCCCCEEEEECCCCeEEEEeCCCC--CccCCCCceE---
Confidence 4566777788999999999987665 5666787776 556678999999999999999999876 3333322221
Q ss_pred eEEEEecCCeeeecCCcceEEEEEeeCCcccccccC
Q 047325 332 KCLAVEEDRDSSSSTSSCAQRWIVYSGSLDKSDDDV 367 (368)
Q Consensus 332 ~~l~~~~~~~~~~~~~~~~~~w~l~sg~~D~~v~i~ 367 (368)
....+.+.... .+.+++.|+.+++|
T Consensus 377 ~~~~~~~~~~~-----------~~~~~~~~~~~~~W 401 (408)
T 4a11_B 377 TKSQLNPAFED-----------AWSSSDEEGGTSAW 401 (408)
T ss_dssp ------------------------------------
T ss_pred eccccccccce-----------eecccCccCceeec
Confidence 12233333221 35567778888888
No 115
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.5e-33 Score=240.29 Aligned_cols=248 Identities=13% Similarity=0.097 Sum_probs=197.5
Q ss_pred CcCCcEEEEEecCC--EEEEccCCCcEEEEcCCcceecccCCCC-----CeeEEEEe--CCEEEEEeCCCeEEEEeecCC
Q 047325 42 REEGHIYSLAASKD--LLYTGSDSKNIRVWKNLKEFCGFKASSG-----LVKAIVIS--GEKIFTGHQDGKIRVWKISPK 112 (368)
Q Consensus 42 ~h~~~i~~~~~~~~--~l~s~~~dg~i~iw~~~~~~~~~~~~~~-----~v~~~~~~--~~~l~s~~~dg~i~vw~~~~~ 112 (368)
.|...|.+++|+|+ +||+++.||+|++||....+..+. |.. .|.+++|+ |++|++|+.||+|++||+.++
T Consensus 83 ~~~~~V~~vawSPdG~~LAs~s~dg~V~iwd~~~~l~~l~-~~~~~~~~sv~svafSPDG~~LAsgs~DGtVkIWd~~~~ 161 (588)
T 2j04_A 83 QPVCYPRVCKPSPIDDWMAVLSNNGNVSVFKDNKMLTNLD-SKGNLSSRTYHCFEWNPIESSIVVGNEDGELQFFSIRKN 161 (588)
T ss_dssp SCSCCEEEEEECSSSSCEEEEETTSCEEEEETTEEEEECC-CSSCSTTTCEEEEEECSSSSCEEEEETTSEEEEEECCCC
T ss_pred CCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCceeeecc-CCCccccccEEEEEEcCCCCEEEEEcCCCEEEEEECCCC
Confidence 55888999999876 999999999999999777666666 665 49999998 899999999999999999876
Q ss_pred CccccccCCccccceeeeeccCCCCceeEecccceeee----eecCCCEeEEEEcCCCCEEEEEeCCCcEEEEEccCCeE
Q 047325 113 NQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALW----IRHSDAVSCMSLDQDCGLLYTASWDRTFKVWRISDSKC 188 (368)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~ 188 (368)
........ ....+ .+|.+.|.+++|+|++ +++++.|+.|++||+..++.
T Consensus 162 ~l~~~~~i-------------------------~l~ti~~~~~gh~~~V~sVawSPdg--Laass~D~tVrlWd~~~~~~ 214 (588)
T 2j04_A 162 SENTPEFY-------------------------FESSIRLSDAGSKDWVTHIVWYEDV--LVAALSNNSVFSMTVSASSH 214 (588)
T ss_dssp TTTCCCCE-------------------------EEEEEECSCTTCCCCEEEEEEETTE--EEEEETTCCEEEECCCSSSS
T ss_pred ccccccce-------------------------eeeeeecccccccccEEEEEEcCCc--EEEEeCCCeEEEEECCCCcc
Confidence 42100000 00011 2378899999999998 88899999999999988773
Q ss_pred ---EEEe-ecCCCceEEEEeCCCCeEEEEcCCCeEEEEEcCCCCCCcccccceeeccccccEEEEEE--cCCCCEEEEec
Q 047325 189 ---LESV-SAHDDAVNSVVSSSEGLIFTGSADGTVKVWKREQHGKGTKHSLAQTLLKQECAVTALVV--SSSRSIVYCGS 262 (368)
Q Consensus 189 ---~~~~-~~~~~~v~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~--~~~~~~l~~~~ 262 (368)
..++ .+|...|.+++|+ +..|++++ +++|++||+... .......+|...+..++| +|++..|++++
T Consensus 215 ~~~~~tL~~~h~~~V~svaFs-g~~LASa~-~~tIkLWd~~~~------~~~~~~~gh~~~V~~va~~~s~d~~~La~a~ 286 (588)
T 2j04_A 215 QPVSRMIQNASRRKITDLKIV-DYKVVLTC-PGYVHKIDLKNY------SISSLKTGSLENFHIIPLNHEKESTILLMSN 286 (588)
T ss_dssp CCCEEEEECCCSSCCCCEEEE-TTEEEEEC-SSEEEEEETTTT------EEEEEECSCCSCCCEEEETTCSSCEEEEECS
T ss_pred ccceeeecccccCcEEEEEEE-CCEEEEEe-CCeEEEEECCCC------eEEEEEcCCCceEEEEEeeeCCCCCEEEEEc
Confidence 3556 4788899999999 45888887 699999999865 122333379999999999 99999999999
Q ss_pred CCCcEEEEeCCCccccceeeeccceEEEEEEeCCCEEEEeeCCCeEEEEecCCCceeeeEeeeccccCeeEEEEecCCee
Q 047325 263 SDGLVNFWEREKQLSHGGVLKGHKLAVLCLAAAGKLVFSGSADKTICVWRRDGAIHTCLSVLTGHTGPVKCLAVEEDRDS 342 (368)
Q Consensus 263 ~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~ 342 (368)
+||+ ++|.... ..++|++..+++. |+++++|+..... +..+.+ ...|.+++|+|||+.
T Consensus 287 edG~-klw~~d~---------------~~~spd~~l~a~~--d~~v~lW~~~g~~---l~~~~~-~~~I~~va~SPdG~~ 344 (588)
T 2j04_A 287 KTSY-KVLLEDE---------------LHVTADNIIAPYL--EKKFKKWSTIWNE---FNNYET-TLVIHGISLSPDGYS 344 (588)
T ss_dssp SCEE-EEEESSS---------------EEEECCCSSHHHH--HHHHHHTTTTTTS---SSSSCC-EEEEEEEEECTTSSE
T ss_pred CCCC-EEEeecc---------------EEECCCceEEEEc--CCEEEEEECCCCc---eeeecc-ceEEEEEEECCCCCE
Confidence 9999 9999871 4488999888775 9999999875542 334444 677999999999997
Q ss_pred eecCC
Q 047325 343 SSSTS 347 (368)
Q Consensus 343 ~~~~~ 347 (368)
+|+++
T Consensus 345 lA~~~ 349 (588)
T 2j04_A 345 IAIVY 349 (588)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 77654
No 116
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=100.00 E-value=8.6e-31 Score=228.03 Aligned_cols=277 Identities=12% Similarity=0.112 Sum_probs=209.5
Q ss_pred ceeeeccCcCCcEEEEEecCC--EEEEccCCCcEEEEcCCcc--ee-----cccCCCCCeeEEEEe--CCEEEEEeCCCe
Q 047325 35 GLIGSLVREEGHIYSLAASKD--LLYTGSDSKNIRVWKNLKE--FC-----GFKASSGLVKAIVIS--GEKIFTGHQDGK 103 (368)
Q Consensus 35 ~~~~~~~~h~~~i~~~~~~~~--~l~s~~~dg~i~iw~~~~~--~~-----~~~~~~~~v~~~~~~--~~~l~s~~~dg~ 103 (368)
..+..+..+ ..+.+++|+++ ++++++.|+.|++||+.+. .. .+.+|...|.+++|+ +.++++++.|+.
T Consensus 114 ~~~~~~~~~-~~~~~~~~s~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~ 192 (433)
T 3bws_A 114 RFISRFKTG-FQPKSVRFIDNTRLAIPLLEDEGMDVLDINSGQTVRLSPPEKYKKKLGFVETISIPEHNELWVSQMQANA 192 (433)
T ss_dssp EEEEEEECS-SCBCCCEESSSSEEEEEBTTSSSEEEEETTTCCEEEECCCHHHHTTCCEEEEEEEGGGTEEEEEEGGGTE
T ss_pred eEEEEEcCC-CCceEEEEeCCCeEEEEeCCCCeEEEEECCCCeEeeecCcccccccCCceeEEEEcCCCEEEEEECCCCE
Confidence 344444444 34558888754 8888889999999998743 22 355889999999996 778999999999
Q ss_pred EEEEeecCCCccccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcCCCCEEEEEe-CCCcEEEEE
Q 047325 104 IRVWKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCGLLYTAS-WDRTFKVWR 182 (368)
Q Consensus 104 i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d~~i~iwd 182 (368)
|++||+++++.... +..|...+.+++|+|+++.+++++ .|+.|++||
T Consensus 193 v~~~d~~~~~~~~~--------------------------------~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d 240 (433)
T 3bws_A 193 VHVFDLKTLAYKAT--------------------------------VDLTGKWSKILLYDPIRDLVYCSNWISEDISVID 240 (433)
T ss_dssp EEEEETTTCCEEEE--------------------------------EECSSSSEEEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred EEEEECCCceEEEE--------------------------------EcCCCCCeeEEEEcCCCCEEEEEecCCCcEEEEE
Confidence 99999987653222 223788999999999999885554 799999999
Q ss_pred ccCCeEEEEeecCCCceEEEEeCCCC-eEEEEc--------CCCeEEEEEcCCCCCCcccccceeeccccccEEEEEEcC
Q 047325 183 ISDSKCLESVSAHDDAVNSVVSSSEG-LIFTGS--------ADGTVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSS 253 (368)
Q Consensus 183 ~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~--------~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 253 (368)
+++++.+..+..+ ..+.+++|+|++ .+++++ .|+.|++||++... . .....+...+.+++|+|
T Consensus 241 ~~~~~~~~~~~~~-~~~~~~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~------~-~~~~~~~~~~~~~~~~~ 312 (433)
T 3bws_A 241 RKTKLEIRKTDKI-GLPRGLLLSKDGKELYIAQFSASNQESGGGRLGIYSMDKEK------L-IDTIGPPGNKRHIVSGN 312 (433)
T ss_dssp TTTTEEEEECCCC-SEEEEEEECTTSSEEEEEEEESCTTCSCCEEEEEEETTTTE------E-EEEEEEEECEEEEEECS
T ss_pred CCCCcEEEEecCC-CCceEEEEcCCCCEEEEEECCCCccccCCCeEEEEECCCCc------E-EeeccCCCCcceEEECC
Confidence 9999998888754 558999999999 777777 58899999998652 2 22234566789999999
Q ss_pred CCCEE-EEecCCCcEEEEeCCCccccceeeeccceEEEEEEeCCCEEEEeeC---------------CCeEEEEecCCCc
Q 047325 254 SRSIV-YCGSSDGLVNFWEREKQLSHGGVLKGHKLAVLCLAAAGKLVFSGSA---------------DKTICVWRRDGAI 317 (368)
Q Consensus 254 ~~~~l-~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~---------------dg~i~iw~~~~~~ 317 (368)
+++.+ ++++.++.|++||+++++.............++++|++++|++++. ||.|++||+.+.
T Consensus 313 ~g~~l~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~- 391 (433)
T 3bws_A 313 TENKIYVSDMCCSKIEVYDLKEKKVQKSIPVFDKPNTIALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTD- 391 (433)
T ss_dssp STTEEEEEETTTTEEEEEETTTTEEEEEEECSSSEEEEEECTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTT-
T ss_pred CCCEEEEEecCCCEEEEEECCCCcEEEEecCCCCCCeEEEcCCCCEEEEEecCCCccccccccccccceEEEEEECCCC-
Confidence 99754 6668999999999997665533333333444677788998888876 579999998876
Q ss_pred eeeeEeeeccccCeeEEEEecCCeeeecCCcceEEEEEee-CCcccccccC
Q 047325 318 HTCLSVLTGHTGPVKCLAVEEDRDSSSSTSSCAQRWIVYS-GSLDKSDDDV 367 (368)
Q Consensus 318 ~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~w~l~s-g~~D~~v~i~ 367 (368)
+.+..+.. ...+.+++|+|+++. |++ ++.|+.|++|
T Consensus 392 -~~~~~~~~-~~~~~~~~~s~dg~~------------l~~~~~~d~~i~v~ 428 (433)
T 3bws_A 392 -TVKEFWEA-GNQPTGLDVSPDNRY------------LVISDFLDHQIRVY 428 (433)
T ss_dssp -EEEEEEEC-SSSEEEEEECTTSCE------------EEEEETTTTEEEEE
T ss_pred -cEEEEecC-CCCCceEEEcCCCCE------------EEEEECCCCeEEEE
Confidence 55666654 457999999999984 333 3457777776
No 117
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=100.00 E-value=2e-31 Score=226.75 Aligned_cols=243 Identities=16% Similarity=0.191 Sum_probs=191.9
Q ss_pred cceecccCCCCCeeEEEEeC-----CEEEEEeCCCeEEEEeecCCCccccccCCccccceeeeeccCCCCceeEecccce
Q 047325 73 KEFCGFKASSGLVKAIVISG-----EKIFTGHQDGKIRVWKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRT 147 (368)
Q Consensus 73 ~~~~~~~~~~~~v~~~~~~~-----~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (368)
+.+..+.+|...|.+++|+. ++|++|+.||.|++||+.+..... .
T Consensus 30 ~~~~~~~~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~------------------------------~ 79 (368)
T 3mmy_A 30 KDIEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTI------------------------------P 79 (368)
T ss_dssp CCEECSSCCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCEE------------------------------E
T ss_pred ceeEeccCCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCcee------------------------------E
Confidence 45667889999999999982 689999999999999998733111 1
Q ss_pred eeeeecCCCEeEEEEcCCCCEEEEEeCCCcEEEEEccCCeEEEEeecCCCceEEEEe--CCCC-eEEEEcCCCeEEEEEc
Q 047325 148 ALWIRHSDAVSCMSLDQDCGLLYTASWDRTFKVWRISDSKCLESVSAHDDAVNSVVS--SSEG-LIFTGSADGTVKVWKR 224 (368)
Q Consensus 148 ~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~--~~~~-~l~~~~~dg~i~i~d~ 224 (368)
..+.+|...|++++|+|++++|++++.||.|++||+.+++.+. +..|...|.+++| ++++ +|++++.||.|++||+
T Consensus 80 ~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~ 158 (368)
T 3mmy_A 80 KAQQMHTGPVLDVCWSDDGSKVFTASCDKTAKMWDLSSNQAIQ-IAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDT 158 (368)
T ss_dssp EEEEECSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEE-EEECSSCEEEEEEEECSSCEEEEEEETTSEEEEECS
T ss_pred EEeccccCCEEEEEECcCCCEEEEEcCCCcEEEEEcCCCCcee-eccccCceEEEEEEeCCCCCEEEEccCCCcEEEEEC
Confidence 2345599999999999999999999999999999999998776 5569999999999 8888 8999999999999999
Q ss_pred CCCCCCcccccceeeccccccEEEEEEcCCCCEEEEecCCCcEEEEeCCCccccce---eeeccceEEEEEEeCCCE---
Q 047325 225 EQHGKGTKHSLAQTLLKQECAVTALVVSSSRSIVYCGSSDGLVNFWEREKQLSHGG---VLKGHKLAVLCLAAAGKL--- 298 (368)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~---~~~~~~~~~~~~~~~~~~--- 298 (368)
+... ....+..+ ..+.++.+. ...+++++.++.+++|+++....... ....+...+.++.++...
T Consensus 159 ~~~~------~~~~~~~~-~~~~~~~~~--~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (368)
T 3mmy_A 159 RSSN------PMMVLQLP-ERCYCADVI--YPMAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPT 229 (368)
T ss_dssp SCSS------CSEEEECS-SCEEEEEEE--TTEEEEEEGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEE
T ss_pred CCCc------EEEEEecC-CCceEEEec--CCeeEEEeCCCcEEEEEeccccchhhhccccccCCCceEEEcccCCCCCC
Confidence 8753 33444433 356666665 45788899999999999986543322 223456667777776655
Q ss_pred -EEEeeCCCeEEEEecCCCce-eeeEeeecccc------------CeeEEEEecCCeeeecCCcceEEEEEeeCCccccc
Q 047325 299 -VFSGSADKTICVWRRDGAIH-TCLSVLTGHTG------------PVKCLAVEEDRDSSSSTSSCAQRWIVYSGSLDKSD 364 (368)
Q Consensus 299 -l~~~~~dg~i~iw~~~~~~~-~~~~~~~~h~~------------~v~~l~~~~~~~~~~~~~~~~~~w~l~sg~~D~~v 364 (368)
+++++.||.|++|+++.... ..+..+..|.. +|++++|+|++. .|++|+.||.|
T Consensus 230 ~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~------------~l~s~~~dg~i 297 (368)
T 3mmy_A 230 GFALGSIEGRVAIHYINPPNPAKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHG------------TLATVGSDGRF 297 (368)
T ss_dssp EEEEEETTSEEEEEESSCSCHHHHSEEEECSEEC----CCCEEECCEEEEEECTTTC------------CEEEEETTSCE
T ss_pred eEEEecCCCcEEEEecCCCCccccceeeeeeecccccccccccccceEEEEEecCCC------------EEEEEccCCeE
Confidence 99999999999999987643 55667777776 799999999999 45566666666
Q ss_pred ccC
Q 047325 365 DDV 367 (368)
Q Consensus 365 ~i~ 367 (368)
++|
T Consensus 298 ~iw 300 (368)
T 3mmy_A 298 SFW 300 (368)
T ss_dssp EEE
T ss_pred EEE
Confidence 665
No 118
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=100.00 E-value=8.6e-30 Score=218.74 Aligned_cols=243 Identities=14% Similarity=0.123 Sum_probs=185.9
Q ss_pred EEEEccCCCcEEEEcCCcc--eecccCCCCCeeEEEEe--CCEE-EEEeCCCeEEEEeecCCCccccccCCccccceeee
Q 047325 56 LLYTGSDSKNIRVWKNLKE--FCGFKASSGLVKAIVIS--GEKI-FTGHQDGKIRVWKISPKNQSVHKRAGTLPTLKDIF 130 (368)
Q Consensus 56 ~l~s~~~dg~i~iw~~~~~--~~~~~~~~~~v~~~~~~--~~~l-~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~ 130 (368)
++++++.|+.|++||+.+. ...+..|. .+.+++|+ ++++ ++++.|+.|++||+.+++......
T Consensus 4 l~vs~~~d~~v~v~d~~~~~~~~~~~~~~-~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~~~~~~----------- 71 (391)
T 1l0q_A 4 AYIANSESDNISVIDVTSNKVTATIPVGS-NPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVP----------- 71 (391)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEEECSS-SEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEE-----------
T ss_pred EEEEcCCCCEEEEEECCCCeEEEEeecCC-CcceEEECCCCCEEEEECCCCCeEEEEECCCCeEEEEEE-----------
Confidence 6889999999999998743 33455554 58999998 6666 677799999999998775432221
Q ss_pred eccCCCCceeEecccceeeeeecCCCEeEEEEcCCCCEEEEEe-CCCcEEEEEccCCeEEEEeecCCCceEEEEeCCCC-
Q 047325 131 KSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCGLLYTAS-WDRTFKVWRISDSKCLESVSAHDDAVNSVVSSSEG- 208 (368)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~- 208 (368)
+...+.+++|+|++++|++++ .++.|++||+.+++.+..+..+ ..+.+++|+|++
T Consensus 72 ----------------------~~~~v~~~~~spdg~~l~~~~~~~~~v~v~d~~~~~~~~~~~~~-~~~~~~~~s~dg~ 128 (391)
T 1l0q_A 72 ----------------------AGSSPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTG-KSPLGLALSPDGK 128 (391)
T ss_dssp ----------------------CSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECS-SSEEEEEECTTSS
T ss_pred ----------------------CCCCccceEECCCCCEEEEEECCCCEEEEEECCCCeEEEEEeCC-CCcceEEECCCCC
Confidence 334899999999999886555 6699999999999998888754 468999999999
Q ss_pred eE-EEEcCCCeEEEEEcCCCCCCcccccceeeccccccEEEEEEcCCCCEE-EEecCCCcEEEEeCCCccccceeeeccc
Q 047325 209 LI-FTGSADGTVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSSSRSIV-YCGSSDGLVNFWEREKQLSHGGVLKGHK 286 (368)
Q Consensus 209 ~l-~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l-~~~~~dg~i~i~d~~~~~~~~~~~~~~~ 286 (368)
.+ ++++.++.|++||++... ....+.. ...+.+++|+|+++.| ++++.++.|++||++++...........
T Consensus 129 ~l~~~~~~~~~v~~~d~~~~~------~~~~~~~-~~~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~ 201 (391)
T 1l0q_A 129 KLYVTNNGDKTVSVINTVTKA------VINTVSV-GRSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDTVKVEAA 201 (391)
T ss_dssp EEEEEETTTTEEEEEETTTTE------EEEEEEC-CSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECSSE
T ss_pred EEEEEeCCCCEEEEEECCCCc------EEEEEec-CCCcceEEECCCCCEEEEEeCCCCEEEEEECCCCeEEEEEecCCC
Confidence 55 788889999999997652 2333333 3457999999999887 6778899999999998765433222222
Q ss_pred eEEEEEEeCCCEEEEee---CCCeEEEEecCCCceeeeEeeeccccCeeEEEEecCCeee
Q 047325 287 LAVLCLAAAGKLVFSGS---ADKTICVWRRDGAIHTCLSVLTGHTGPVKCLAVEEDRDSS 343 (368)
Q Consensus 287 ~~~~~~~~~~~~l~~~~---~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~ 343 (368)
...+++++++++|++++ .++.|++||+.+. +.+..+..|. .+.+++|+|+++.+
T Consensus 202 ~~~~~~~~~g~~l~~~~~~~~~~~v~~~d~~~~--~~~~~~~~~~-~~~~~~~s~dg~~l 258 (391)
T 1l0q_A 202 PSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTN--KITARIPVGP-DPAGIAVTPDGKKV 258 (391)
T ss_dssp EEEEEECTTSSEEEEEEECSSCCEEEEEETTTT--EEEEEEECCS-SEEEEEECTTSSEE
T ss_pred ccceEECCCCCEEEEEecCcCCCcEEEEECCCC--eEEEEEecCC-CccEEEEccCCCEE
Confidence 23356777899998888 6899999999876 5566666654 57899999999854
No 119
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1e-30 Score=228.54 Aligned_cols=201 Identities=13% Similarity=0.131 Sum_probs=162.7
Q ss_pred eecCCCEeEEEEcCCCCEE-EEEeCCCcEEEEEcc--CCeEEEEee--cCCCceEEEEeCCCC-eEEEEcCCCeEEEEEc
Q 047325 151 IRHSDAVSCMSLDQDCGLL-YTASWDRTFKVWRIS--DSKCLESVS--AHDDAVNSVVSSSEG-LIFTGSADGTVKVWKR 224 (368)
Q Consensus 151 ~~~~~~v~~~~~~~~~~~l-~~~~~d~~i~iwd~~--~~~~~~~~~--~~~~~v~~~~~~~~~-~l~~~~~dg~i~i~d~ 224 (368)
.+|.+.|.+++|+|++++| ++++.||.|++||+. +++.+..+. .|...|.+++|+|++ +|++++.+|.|++|++
T Consensus 99 ~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~g~v~~~~~ 178 (450)
T 2vdu_B 99 PPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAEDDTTVIIADKFGDVYSIDI 178 (450)
T ss_dssp -CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCEEEEEECTTSSEEEEEETTSEEEEEET
T ss_pred CccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeeecccCCCCceEEEEcCCCCEEEEEeCCCcEEEEec
Confidence 3577889999999999996 889899999999999 888888876 567899999999999 9999999999999999
Q ss_pred CCCCCCcccccceeeccccccEEEEEEcCC---CCEEEEecCCCcEEEEeCCCccccceeeeccceEEEEEEe-CCCEEE
Q 047325 225 EQHGKGTKHSLAQTLLKQECAVTALVVSSS---RSIVYCGSSDGLVNFWEREKQLSHGGVLKGHKLAVLCLAA-AGKLVF 300 (368)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~---~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~ 300 (368)
....... .....+.+|...|.+++|+|+ +++|++++.|+.|++||++++........+|...+.++.+ ++++|+
T Consensus 179 ~~~~~~~--~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~~sd~~~l~ 256 (450)
T 2vdu_B 179 NSIPEEK--FTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFIVDKWLFGHKHFVSSICCGKDYLLL 256 (450)
T ss_dssp TSCCCSS--CCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTTCEEEECCCCSSCEEEEEECSTTEEE
T ss_pred CCccccc--ccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCceeeeeecCCCCceEEEEECCCCEEE
Confidence 8653211 023356678899999999999 9999999999999999999877665556678887765555 799999
Q ss_pred EeeCCCeEEEEecCCCceeeeEeeec-------------------------cccCeeEEEEecCCeeeecC---CcceEE
Q 047325 301 SGSADKTICVWRRDGAIHTCLSVLTG-------------------------HTGPVKCLAVEEDRDSSSST---SSCAQR 352 (368)
Q Consensus 301 ~~~~dg~i~iw~~~~~~~~~~~~~~~-------------------------h~~~v~~l~~~~~~~~~~~~---~~~~~~ 352 (368)
+|+.|+.|++||+.++ +.+..+.. ....|.+++|+|++.+++++ ++.+++
T Consensus 257 s~~~d~~v~vwd~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~d~~i~i 334 (450)
T 2vdu_B 257 SAGGDDKIFAWDWKTG--KNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSKNLPFVAFFVEATKCIII 334 (450)
T ss_dssp EEESSSEEEEEETTTC--CEEEEEECHHHHGGGCCTTSBC----------CBCCCEEEEEECSSSSEEEEEETTCSEEEE
T ss_pred EEeCCCeEEEEECCCC--cEeeeecchhhhhhhhhhcccccccccccccccceEEEEEEEEeCCCCEEEEEECCCCeEEE
Confidence 9999999999999876 44454442 23569999999999966544 334555
Q ss_pred EEE
Q 047325 353 WIV 355 (368)
Q Consensus 353 w~l 355 (368)
|.+
T Consensus 335 w~~ 337 (450)
T 2vdu_B 335 LEM 337 (450)
T ss_dssp EEE
T ss_pred EEe
Confidence 655
No 120
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=100.00 E-value=8.2e-31 Score=220.86 Aligned_cols=231 Identities=13% Similarity=0.077 Sum_probs=174.3
Q ss_pred CcEEEEEecCCEEEEccCCCcEEEEcCCcce-----------ecc-cCCCCCeeEEEEe----CCEEEEEeCCCeEEEEe
Q 047325 45 GHIYSLAASKDLLYTGSDSKNIRVWKNLKEF-----------CGF-KASSGLVKAIVIS----GEKIFTGHQDGKIRVWK 108 (368)
Q Consensus 45 ~~i~~~~~~~~~l~s~~~dg~i~iw~~~~~~-----------~~~-~~~~~~v~~~~~~----~~~l~s~~~dg~i~vw~ 108 (368)
..|.++.+++. +++|+.|++|++|+..... ..+ ..|...|.+++++ ++++++++.||+|++||
T Consensus 77 ~~v~~~~~~~~-~~s~s~D~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd 155 (343)
T 3lrv_A 77 PNPRTGGEHPA-IISRGPCNRLLLLYPGNQITILDSKTNKVLREIEVDSANEIIYMYGHNEVNTEYFIWADNRGTIGFQS 155 (343)
T ss_dssp ECCCTTCCCCS-EEEECSTTEEEEEETTTEEEEEETTTCCEEEEEECCCSSCEEEEECCC---CCEEEEEETTCCEEEEE
T ss_pred CCceeeeeCCc-eEEecCCCeEEEEEccCceEEeecCCcceeEEeecCCCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEE
Confidence 45666677777 9999999999999865332 222 3566889999986 57999999999999999
Q ss_pred ecCCCccccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcCCCCEEEEEeCCCcEEEEEccCCeE
Q 047325 109 ISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCGLLYTASWDRTFKVWRISDSKC 188 (368)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~ 188 (368)
+++++....... .|...|++++|+|++.+|++|+.||.|++||+++++.
T Consensus 156 ~~~~~~~~~~~~-------------------------------~~~~~i~~~~~~pdg~~lasg~~dg~i~iwd~~~~~~ 204 (343)
T 3lrv_A 156 YEDDSQYIVHSA-------------------------------KSDVEYSSGVLHKDSLLLALYSPDGILDVYNLSSPDQ 204 (343)
T ss_dssp SSSSCEEEEECC-------------------------------CSSCCCCEEEECTTSCEEEEECTTSCEEEEESSCTTS
T ss_pred CCCCcEEEEEec-------------------------------CCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCCC
Confidence 987764221111 1566799999999999999999999999999999988
Q ss_pred E-EEeec-CCCceEEEEeCCCC-eEEEEcCCCeEEEEEcCCCCCCcccccceeeccccccE--EEEEEcCCCCEEEEecC
Q 047325 189 L-ESVSA-HDDAVNSVVSSSEG-LIFTGSADGTVKVWKREQHGKGTKHSLAQTLLKQECAV--TALVVSSSRSIVYCGSS 263 (368)
Q Consensus 189 ~-~~~~~-~~~~v~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~i--~~~~~~~~~~~l~~~~~ 263 (368)
+ ..+.. |..+|.+++|+|++ +|++++ |+.|++||++...... ....+..+...+ .+++|+|++++|++++.
T Consensus 205 ~~~~~~~~h~~~v~~l~fs~~g~~l~s~~-~~~v~iwd~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~g~~l~~~s~ 280 (343)
T 3lrv_A 205 ASSRFPVDEEAKIKEVKFADNGYWMVVEC-DQTVVCFDLRKDVGTL---AYPTYTIPEFKTGTVTYDIDDSGKNMIAYSN 280 (343)
T ss_dssp CCEECCCCTTSCEEEEEECTTSSEEEEEE-SSBEEEEETTSSTTCB---SSCCCBC-----CCEEEEECTTSSEEEEEET
T ss_pred CccEEeccCCCCEEEEEEeCCCCEEEEEe-CCeEEEEEcCCCCcce---eecccccccccccceEEEECCCCCEEEEecC
Confidence 7 78888 99999999999999 888888 5599999998763311 111111233333 46999999999999888
Q ss_pred -CCcEEEEeCCCccccceeeeccceEEEEEEe---CCCEEEEeeCCCeEEEEecC
Q 047325 264 -DGLVNFWEREKQLSHGGVLKGHKLAVLCLAA---AGKLVFSGSADKTICVWRRD 314 (368)
Q Consensus 264 -dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~---~~~~l~~~~~dg~i~iw~~~ 314 (368)
|+.+++|++++....... ......++.+ +...+++++.||.+.++-..
T Consensus 281 ~d~~i~v~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~~ 332 (343)
T 3lrv_A 281 ESNSLTIYKFDKKTKNWTK---DEESALCLQSDTADFTDMDVVCGDGGIAAILKT 332 (343)
T ss_dssp TTTEEEEEEECTTTCSEEE---EEEEECCC----CCCCEEEEEEETTEEEEEEEC
T ss_pred CCCcEEEEEEcccccceEe---cCceeEecCccccccceeEEEecCCceEEEEec
Confidence 999999999765433222 2334455666 77899999999999988543
No 121
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=100.00 E-value=3.6e-29 Score=214.84 Aligned_cols=254 Identities=15% Similarity=0.183 Sum_probs=192.0
Q ss_pred cCCCceeeeccCcCCcEEEEEecCC--E-EEEccCCCcEEEEcCCcc--eecccCCCCCeeEEEEe--CCEEE-EEeCCC
Q 047325 31 LPQNGLIGSLVREEGHIYSLAASKD--L-LYTGSDSKNIRVWKNLKE--FCGFKASSGLVKAIVIS--GEKIF-TGHQDG 102 (368)
Q Consensus 31 ~~~~~~~~~~~~h~~~i~~~~~~~~--~-l~s~~~dg~i~iw~~~~~--~~~~~~~~~~v~~~~~~--~~~l~-s~~~dg 102 (368)
+..++.+..+.+|. .+.+++|+++ + +++++.|++|++||+.+. ...+..+. .+.+++|+ +++|+ +++.|+
T Consensus 19 ~~~~~~~~~~~~~~-~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~~~~~~~~~-~v~~~~~spdg~~l~~~~~~~~ 96 (391)
T 1l0q_A 19 VTSNKVTATIPVGS-NPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGS-SPQGVAVSPDGKQVYVTNMASS 96 (391)
T ss_dssp TTTTEEEEEEECSS-SEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECSS-SEEEEEECTTSSEEEEEETTTT
T ss_pred CCCCeEEEEeecCC-CcceEEECCCCCEEEEECCCCCeEEEEECCCCeEEEEEECCC-CccceEECCCCCEEEEEECCCC
Confidence 44556667777665 4899999865 4 478889999999998643 33344443 89999998 66665 455679
Q ss_pred eEEEEeecCCCccccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcCCCCEE-EEEeCCCcEEEE
Q 047325 103 KIRVWKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCGLL-YTASWDRTFKVW 181 (368)
Q Consensus 103 ~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~~~d~~i~iw 181 (368)
.|++||+.+++..... .+...+.+++|+|+++.+ ++++.++.|++|
T Consensus 97 ~v~v~d~~~~~~~~~~---------------------------------~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~ 143 (391)
T 1l0q_A 97 TLSVIDTTSNTVAGTV---------------------------------KTGKSPLGLALSPDGKKLYVTNNGDKTVSVI 143 (391)
T ss_dssp EEEEEETTTTEEEEEE---------------------------------ECSSSEEEEEECTTSSEEEEEETTTTEEEEE
T ss_pred EEEEEECCCCeEEEEE---------------------------------eCCCCcceEEECCCCCEEEEEeCCCCEEEEE
Confidence 9999999876532211 144578999999999977 677789999999
Q ss_pred EccCCeEEEEeecCCCceEEEEeCCCC-eE-EEEcCCCeEEEEEcCCCCCCcccccceeeccccccEEEEEEcCCCCEEE
Q 047325 182 RISDSKCLESVSAHDDAVNSVVSSSEG-LI-FTGSADGTVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSSSRSIVY 259 (368)
Q Consensus 182 d~~~~~~~~~~~~~~~~v~~~~~~~~~-~l-~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~ 259 (368)
|+.+++.+..+..+ ..+.+++|+|++ .+ ++++.++.|++||++... .... ..+...+.+++|+|++++|+
T Consensus 144 d~~~~~~~~~~~~~-~~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~~------~~~~-~~~~~~~~~~~~~~~g~~l~ 215 (391)
T 1l0q_A 144 NTVTKAVINTVSVG-RSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNS------VIDT-VKVEAAPSGIAVNPEGTKAY 215 (391)
T ss_dssp ETTTTEEEEEEECC-SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTE------EEEE-EECSSEEEEEEECTTSSEEE
T ss_pred ECCCCcEEEEEecC-CCcceEEECCCCCEEEEEeCCCCEEEEEECCCCe------EEEE-EecCCCccceEECCCCCEEE
Confidence 99999999888765 456899999999 55 677889999999998652 2222 23456789999999999999
Q ss_pred Eec---CCCcEEEEeCCCccccceeeeccce-EEEEEEeCCCEE-EEeeCCCeEEEEecCCCceeeeEeeeccccC
Q 047325 260 CGS---SDGLVNFWEREKQLSHGGVLKGHKL-AVLCLAAAGKLV-FSGSADKTICVWRRDGAIHTCLSVLTGHTGP 330 (368)
Q Consensus 260 ~~~---~dg~i~i~d~~~~~~~~~~~~~~~~-~~~~~~~~~~~l-~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~ 330 (368)
+++ .++.|++||+++++... .+..+.. ...+++|++++| ++++.|+.|++||+.+. +.+..+..|..+
T Consensus 216 ~~~~~~~~~~v~~~d~~~~~~~~-~~~~~~~~~~~~~s~dg~~l~~s~~~d~~v~v~d~~~~--~~~~~~~~~~~~ 288 (391)
T 1l0q_A 216 VTNVDKYFNTVSMIDTGTNKITA-RIPVGPDPAGIAVTPDGKKVYVALSFXNTVSVIDTATN--TITATMAVGKNP 288 (391)
T ss_dssp EEEECSSCCEEEEEETTTTEEEE-EEECCSSEEEEEECTTSSEEEEEETTTTEEEEEETTTT--EEEEEEECSSSE
T ss_pred EEecCcCCCcEEEEECCCCeEEE-EEecCCCccEEEEccCCCEEEEEcCCCCEEEEEECCCC--cEEEEEECCcCC
Confidence 888 68999999999876553 3333433 346777889877 67788999999999876 566666666554
No 122
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=99.98 E-value=4.3e-31 Score=226.48 Aligned_cols=218 Identities=12% Similarity=0.151 Sum_probs=157.1
Q ss_pred EEEEccCCCcEEEEcCCcc-------eecccCCCCCeeEEEEe----------CCEEEEEeCCCeEEEEeecCCCccccc
Q 047325 56 LLYTGSDSKNIRVWKNLKE-------FCGFKASSGLVKAIVIS----------GEKIFTGHQDGKIRVWKISPKNQSVHK 118 (368)
Q Consensus 56 ~l~s~~~dg~i~iw~~~~~-------~~~~~~~~~~v~~~~~~----------~~~l~s~~~dg~i~vw~~~~~~~~~~~ 118 (368)
+|++|+.|++|+|||.... +..+.+|.+.|.+++|+ +++|++|+.|++|++||+.++.+.
T Consensus 103 ~las~~~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~~Wd~~~~~~~--- 179 (393)
T 4gq1_A 103 FLACVCQDNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDCTLIIWRLTDEGPI--- 179 (393)
T ss_dssp EEEEEETTSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSEEEEEEEETTEEE---
T ss_pred EEEEEeCCCcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCCCEEEEEECCCeEEEEECCCCcee---
Confidence 7999999999999997643 34578999999999995 579999999999999999876532
Q ss_pred cCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcCCCC-EEEEEeCCCcEEEEEccCCeEEEEe-----
Q 047325 119 RAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCG-LLYTASWDRTFKVWRISDSKCLESV----- 192 (368)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~i~iwd~~~~~~~~~~----- 192 (368)
..+.+|...|.+++|+|++. +|++++.|++|++||+++++.....
T Consensus 180 -----------------------------~~~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~ 230 (393)
T 4gq1_A 180 -----------------------------LAGYPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTEL 230 (393)
T ss_dssp -----------------------------EEEEECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------
T ss_pred -----------------------------eeecCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCC
Confidence 22334889999999999874 8999999999999999887643322
Q ss_pred --------------------ecCCCceEEEEeC-CCC-eEEEEcCCCeEEEEEcCCCCCCcccccceeeccccccEE---
Q 047325 193 --------------------SAHDDAVNSVVSS-SEG-LIFTGSADGTVKVWKREQHGKGTKHSLAQTLLKQECAVT--- 247 (368)
Q Consensus 193 --------------------~~~~~~v~~~~~~-~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~i~--- 247 (368)
.+|...+.++.|. +++ .+++++.|+.+++||+...... ..+..+...+.
T Consensus 231 ~~~~~~~s~~~~~~~~~~~~~~~~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~~~------~~l~~~~~~~~~~~ 304 (393)
T 4gq1_A 231 VKNPWLLTLNTLPLVNTCHSSGIASSLANVRWIGSDGSGILAMCKSGAWLRWNLFANNDY------NEISDSTMKLGPKN 304 (393)
T ss_dssp CSCCCSEEEESGGGC------CCSSSCSEEEEETTTTCEEEEECTTSEEEEEEC-------------------------C
T ss_pred cccceEEecccccceeeeecccccccceeeeeecCCCCEEEEEeCCCCEEEEECccCCCC------ceEeeecCccccEE
Confidence 3566778888876 677 9999999999999999765321 11112221121
Q ss_pred ---------------EEEEcC--CCCEEEEecCCCcEEEEeCCCccccceeeeccceEE--EEEEeCCCEEEEeeCCCeE
Q 047325 248 ---------------ALVVSS--SRSIVYCGSSDGLVNFWEREKQLSHGGVLKGHKLAV--LCLAAAGKLVFSGSADKTI 308 (368)
Q Consensus 248 ---------------~~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~~~dg~i 308 (368)
...++| ++.++++|+.||.|++||..++.... ....|...| ++|+|||++|++++.|| +
T Consensus 305 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sgs~Dg~V~lwd~~~~~~~~-~~~~~~~~V~svafspdG~~LA~as~~G-v 382 (393)
T 4gq1_A 305 LLPNVQGISLFPSLLGACPHPRYMDYFATAHSQHGLIQLINTYEKDSNS-IPIQLGMPIVDFCWHQDGSHLAIATEGS-V 382 (393)
T ss_dssp CSCSEEEECSSCCSSCCEECSSCTTEEEEEETTTTEEEEEETTCTTCCE-EEEECSSCEEEEEECTTSSEEEEEESSE-E
T ss_pred EccccccccccCcceeEEEccCCCCEEEEEECCCCEEEEEECCCCcEEE-EecCCCCcEEEEEEcCCCCEEEEEeCCC-e
Confidence 223333 34467788999999999999876653 445566566 56677999999998776 6
Q ss_pred EEEec
Q 047325 309 CVWRR 313 (368)
Q Consensus 309 ~iw~~ 313 (368)
.+|++
T Consensus 383 ~lvrL 387 (393)
T 4gq1_A 383 LLTRL 387 (393)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 66654
No 123
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=99.98 E-value=4.2e-30 Score=217.24 Aligned_cols=233 Identities=12% Similarity=0.129 Sum_probs=167.6
Q ss_pred cceecccCCCCCeeEEEEe--CCEEEEEeCCCeEEEEeecCCCccccccCCccccceeeeeccCCCCceeEecccceeee
Q 047325 73 KEFCGFKASSGLVKAIVIS--GEKIFTGHQDGKIRVWKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALW 150 (368)
Q Consensus 73 ~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (368)
..+.....|...|.+++|+ +.+|++|+.|| +++|++++.+....
T Consensus 10 ~~~~~~~~h~~~V~~v~fs~dg~~la~g~~~~-~~iw~~~~~~~~~~--------------------------------- 55 (355)
T 3vu4_A 10 NPIVPENHVSNPVTDYEFNQDQSCLILSTLKS-FEIYNVHPVAHIMS--------------------------------- 55 (355)
T ss_dssp ---------CCCCCEEEECTTSSEEEEECSSE-EEEEEETTEEEEEE---------------------------------
T ss_pred CCccccccCCCceEEEEECCCCCEEEEEcCCE-EEEEecCCcceeee---------------------------------
Confidence 3445568899999999998 77888888665 78999876542211
Q ss_pred eecCCCEeEEEEcCCCCEE-EEEeCCCcEEEEEccCCeEEEEeecCCCceEEEEeCCCCeEEEEcCCCeEEEEEcCCCCC
Q 047325 151 IRHSDAVSCMSLDQDCGLL-YTASWDRTFKVWRISDSKCLESVSAHDDAVNSVVSSSEGLIFTGSADGTVKVWKREQHGK 229 (368)
Q Consensus 151 ~~~~~~v~~~~~~~~~~~l-~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~ 229 (368)
.+...+..+++.++++.+ ++++.|+.|++||+.+++++..+. +...|.++.++++..+++ .|+.|++||++...+
T Consensus 56 -~~~~~~~~~~~~~~~~~~~~~~~~d~~v~iWd~~~~~~~~~~~-~~~~v~~v~~~~~~~~~~--~~~~i~i~d~~~~~~ 131 (355)
T 3vu4_A 56 -QEMRHLSKVRMLHRTNYVAFVTGVKEVVHIWDDVKKQDVSRIK-VDAPVKDLFLSREFIVVS--YGDVISVFKFGNPWK 131 (355)
T ss_dssp -EECSCCCEEEECTTSSEEEEECSSTTEEEEEETTTTEEEEEEE-CSSCEEEEEECSSEEEEE--ETTEEEEEESSTTCC
T ss_pred -eecCCeEEEEEcCCCCEEEEEECCccEEEEEECCCCcEEEEEE-CCCceEEEEEcCCEEEEE--EcCEEEEEECCCCce
Confidence 122357788888888877 567778999999999999999887 667899999998764433 478999999986511
Q ss_pred CcccccceeeccccccEEEEEEcCCCCEEEE--ecCCCcEEEEeCCCcc--------------cc-ceeeeccceEEEE-
Q 047325 230 GTKHSLAQTLLKQECAVTALVVSSSRSIVYC--GSSDGLVNFWEREKQL--------------SH-GGVLKGHKLAVLC- 291 (368)
Q Consensus 230 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~--~~~dg~i~i~d~~~~~--------------~~-~~~~~~~~~~~~~- 291 (368)
....+.. +...+++++ ++++. |+.||.|++||++++. .+ ...+.+|...+.+
T Consensus 132 -----~~~~~~~---~~~~~~~s~--~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~ 201 (355)
T 3vu4_A 132 -----RITDDIR---FGGVCEFSN--GLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMV 201 (355)
T ss_dssp -----BSSCCEE---EEEEEEEET--TEEEEEESSCTTCEEEEECCC------------------CCEEECCCSSCEEEE
T ss_pred -----eeEEecc---CCceEEEEc--cEEEEeCCCcCcEEEEEECCCCCccccccccccccccCcccEEEEccCCceEEE
Confidence 1222222 344556666 56665 6899999999998754 11 4567788887755
Q ss_pred -EEeCCCEEEEeeCCCe-EEEEecCCCceeeeEeee-c-cccCeeEEEEecCCeeeecCCcceEEEEEeeCCcccccccC
Q 047325 292 -LAAAGKLVFSGSADKT-ICVWRRDGAIHTCLSVLT-G-HTGPVKCLAVEEDRDSSSSTSSCAQRWIVYSGSLDKSDDDV 367 (368)
Q Consensus 292 -~~~~~~~l~~~~~dg~-i~iw~~~~~~~~~~~~~~-~-h~~~v~~l~~~~~~~~~~~~~~~~~~w~l~sg~~D~~v~i~ 367 (368)
++|++++|++|+.||+ |++||+.++ +++..+. + |..+|++++|+|++.+ |++|+.|++|++|
T Consensus 202 ~~s~~g~~l~s~s~d~~~v~iwd~~~~--~~~~~~~~g~h~~~v~~~~~s~~~~~------------l~s~s~d~~v~iw 267 (355)
T 3vu4_A 202 RLNRKSDMVATCSQDGTIIRVFKTEDG--VLVREFRRGLDRADVVDMKWSTDGSK------------LAVVSDKWTLHVF 267 (355)
T ss_dssp EECTTSSEEEEEETTCSEEEEEETTTC--CEEEEEECTTCCSCEEEEEECTTSCE------------EEEEETTCEEEEE
T ss_pred EECCCCCEEEEEeCCCCEEEEEECCCC--cEEEEEEcCCCCCcEEEEEECCCCCE------------EEEEECCCEEEEE
Confidence 4568999999999998 999999876 6777787 5 9999999999999994 5555555555555
No 124
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=99.97 E-value=1.7e-29 Score=213.28 Aligned_cols=207 Identities=17% Similarity=0.223 Sum_probs=169.2
Q ss_pred eeeecCCCEeEEEEcCCCCEEEEEeCCCcEEEEEccCC----eEEEEeecCCCceEEEEeCC--CC-eEEEEcCCCeEEE
Q 047325 149 LWIRHSDAVSCMSLDQDCGLLYTASWDRTFKVWRISDS----KCLESVSAHDDAVNSVVSSS--EG-LIFTGSADGTVKV 221 (368)
Q Consensus 149 ~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~----~~~~~~~~~~~~v~~~~~~~--~~-~l~~~~~dg~i~i 221 (368)
.+.+|.+.|++++|+|++++|++++.||.|++||+.++ +....+.+|...|.+++|+| ++ +|++++.||.|++
T Consensus 6 ~~~gH~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v~v 85 (351)
T 3f3f_A 6 FDSGHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTVKL 85 (351)
T ss_dssp EECCCSSCEEEEEECSSSSEEEEEETTSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCSEEEEEETTSCEEE
T ss_pred cCcccccceeEEEEcCCCCEEEEeeCCCeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCCEEEEEcCCCeEEE
Confidence 44569999999999999999999999999999999876 56778889999999999999 46 9999999999999
Q ss_pred EEcCCCCCC---cccccceeeccccccEEEEEEcCC--CCEEEEecCCCcEEEEeCCCccccceee------------ec
Q 047325 222 WKREQHGKG---TKHSLAQTLLKQECAVTALVVSSS--RSIVYCGSSDGLVNFWEREKQLSHGGVL------------KG 284 (368)
Q Consensus 222 ~d~~~~~~~---~~~~~~~~~~~~~~~i~~~~~~~~--~~~l~~~~~dg~i~i~d~~~~~~~~~~~------------~~ 284 (368)
||++..... ........+..|...|.+++|+|+ +++|++++.||.|++||+++........ ..
T Consensus 86 wd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (351)
T 3f3f_A 86 WEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSIPPAN 165 (351)
T ss_dssp EEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTCTTCCEEEEEEESCSCCCSS
T ss_pred EecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHHhccccccccccccccccCC
Confidence 999875321 111345667789999999999999 9999999999999999998765443221 13
Q ss_pred cceEE--EEEEeC---CCEEEEeeCCCeEEEEecCCCceeeeEeeeccccCeeEEEEecCC----eeeecCCcceEEEEE
Q 047325 285 HKLAV--LCLAAA---GKLVFSGSADKTICVWRRDGAIHTCLSVLTGHTGPVKCLAVEEDR----DSSSSTSSCAQRWIV 355 (368)
Q Consensus 285 ~~~~~--~~~~~~---~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~l~~~~~~----~~~~~~~~~~~~w~l 355 (368)
|...+ ++++|+ +.++++++.|+.+.+|+........+..+.+|..+|++++|+|++ . .|
T Consensus 166 ~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~~~~~~~------------~l 233 (351)
T 3f3f_A 166 HLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAAKLPGHKSLIRSISWAPSIGRWYQ------------LI 233 (351)
T ss_dssp CSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEEEEEECCCCCSCEEEEEECCCSSCSSE------------EE
T ss_pred cccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCceeeeeecCCCCcceeEEEECCCCCCcce------------EE
Confidence 44444 444554 889999999999988887777666688888999999999999998 6 46
Q ss_pred eeCCcccccccC
Q 047325 356 YSGSLDKSDDDV 367 (368)
Q Consensus 356 ~sg~~D~~v~i~ 367 (368)
++|+.||.|++|
T Consensus 234 ~s~~~dg~i~iw 245 (351)
T 3f3f_A 234 ATGCKDGRIRIF 245 (351)
T ss_dssp EEEETTSCEEEE
T ss_pred EEEcCCCeEEEE
Confidence 666666666666
No 125
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=99.97 E-value=4.8e-29 Score=201.87 Aligned_cols=237 Identities=12% Similarity=0.104 Sum_probs=160.2
Q ss_pred ceeeeccCcCCcEEEEEecCC---EEEEccCCCcEE-EE----cCC----cceecccCCCCCeeEEEEeCCEEEEEe---
Q 047325 35 GLIGSLVREEGHIYSLAASKD---LLYTGSDSKNIR-VW----KNL----KEFCGFKASSGLVKAIVISGEKIFTGH--- 99 (368)
Q Consensus 35 ~~~~~~~~h~~~i~~~~~~~~---~l~s~~~dg~i~-iw----~~~----~~~~~~~~~~~~v~~~~~~~~~l~s~~--- 99 (368)
+.++++.+|+.+|..+.+.++ ++..+-.+=.++ ++ ... .+.....+|...|..+ .+..++.++
T Consensus 77 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~sla~spd~~~~~~~l~s~g~~~~v~~l--~~g~lv~ss~~g 154 (356)
T 2w18_A 77 EKLYTWHFAEVPVLQIVPVPDVYNLVCVALGNLEIREIRALFCSSDDESEKQVLLKSGNIKAVLGL--TKRRLVSSSGTL 154 (356)
T ss_dssp EEEEEEECCSSCEEEECCCTTCCSCEEEEECSSSEEEEEEECC------CCEEEEEEEEEEEEEEE--TTTEEEEEESSS
T ss_pred eeeEEEeccCceeEEEEEcCcccceeeeeeccccccceEEEEECCCccccccEEEeCCCeEEEEec--CCCcEEEecccC
Confidence 577888999999999988874 222221111111 11 111 1111112333334333 444555444
Q ss_pred CCCeEEEEeecCCCccccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcC---CCCEEEEEeCCC
Q 047325 100 QDGKIRVWKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQ---DCGLLYTASWDR 176 (368)
Q Consensus 100 ~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~---~~~~l~~~~~d~ 176 (368)
.|+.|++|++...... ...+.+|...++.++|++ ++.+|++++.|+
T Consensus 155 ~d~~V~~~~~s~dG~~-------------------------------~~s~~~~~~~v~~l~fs~~~g~~~~LaSgS~D~ 203 (356)
T 2w18_A 155 SDQQVEVMTFAEDGGG-------------------------------KENQFLMPPEETILTFAEVQGMQEALLGTTIMN 203 (356)
T ss_dssp TTCEEEEEEECTTSCE-------------------------------EEEEEECCCSSCEEEEEEEETSTTEEEEEETTS
T ss_pred CCCcEEEEEECCCCce-------------------------------eeeeccCCCceeeEEeeccCCCCceEEEecCCC
Confidence 4999999999543211 112335888999999999 779999999999
Q ss_pred cEEEEEccCCeEEEEeecCC---CceEEEEeCCCC-eE------------EEEcCCCeEEEEEcCCCCCCcccccceee-
Q 047325 177 TFKVWRISDSKCLESVSAHD---DAVNSVVSSSEG-LI------------FTGSADGTVKVWKREQHGKGTKHSLAQTL- 239 (368)
Q Consensus 177 ~i~iwd~~~~~~~~~~~~~~---~~v~~~~~~~~~-~l------------~~~~~dg~i~i~d~~~~~~~~~~~~~~~~- 239 (368)
+|+|||+.+++++.++.+|. ..+.+++|+|++ .+ ++|+.|++|++||..++. ....+
T Consensus 204 TIkIWDl~TGk~l~tL~g~~~~v~~v~~vafSpdG~~lvs~s~~~~~w~laSGs~D~tIklWd~~tgk------~l~v~~ 277 (356)
T 2w18_A 204 NIVIWNLKTGQLLKKMHIDDSYQASVCHKAYSEMGLLFIVLSHPCAKESESLRSPVFQLIVINPKTTL------SVGVML 277 (356)
T ss_dssp EEEEEETTTCCEEEEEECCC---CCCEEEEEEETTEEEEEEC------------CCEEEEEEETTTTE------EEEEEE
T ss_pred cEEEEECCCCcEEEEEcCCCcceeeeEEEEECCCCCEEEEeccCCCcceeeccCCCcEEEEEECCCCE------EEEEEE
Confidence 99999999999999998754 357778899999 44 567889999999997652 12111
Q ss_pred ----ccccccEEEEEEcCCCCEEEEecCCCcEEEEeCCCccccceeeeccceE---EEEEEeCCCEEEEeeCCCeEEEEe
Q 047325 240 ----LKQECAVTALVVSSSRSIVYCGSSDGLVNFWEREKQLSHGGVLKGHKLA---VLCLAAAGKLVFSGSADKTICVWR 312 (368)
Q Consensus 240 ----~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~---~~~~~~~~~~l~~~~~dg~i~iw~ 312 (368)
.+|...+.+..++ +.++++++.|++|+|||+++++.. ..+.+|... .++|+||+++|++|+.|++|+|||
T Consensus 278 ~~~p~Gh~~~~lsg~~s--g~~lASgS~DgTIkIWDl~tGk~l-~tL~gH~~~vvs~vafSPDG~~LaSGS~D~TIklWd 354 (356)
T 2w18_A 278 YCLPPGQAGRFLEGDVK--DHCAAAILTSGTIAIWDLLLGQCT-ALLPPVSDQHWSFVKWSGTDSHLLAGQKDGNIFVYH 354 (356)
T ss_dssp ECCCTTCCCCEEEEEEE--TTEEEEEETTSCEEEEETTTCSEE-EEECCC--CCCCEEEECSSSSEEEEECTTSCEEEEE
T ss_pred eeccCCCcceeEccccC--CCEEEEEcCCCcEEEEECCCCcEE-EEecCCCCCeEEEEEECCCCCEEEEEECCCcEEEec
Confidence 3455444444443 778999999999999999998766 456666543 357999999999999999999998
Q ss_pred c
Q 047325 313 R 313 (368)
Q Consensus 313 ~ 313 (368)
+
T Consensus 355 ~ 355 (356)
T 2w18_A 355 Y 355 (356)
T ss_dssp E
T ss_pred C
Confidence 5
No 126
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=99.96 E-value=5.5e-27 Score=204.00 Aligned_cols=236 Identities=12% Similarity=0.188 Sum_probs=185.0
Q ss_pred eccCcCCcEEEEEec--CCEEEEccCCCcEEEEcCCc--ceecccCCCCCeeEEEEe--CCEEE-EEeCCCeEEEEeecC
Q 047325 39 SLVREEGHIYSLAAS--KDLLYTGSDSKNIRVWKNLK--EFCGFKASSGLVKAIVIS--GEKIF-TGHQDGKIRVWKISP 111 (368)
Q Consensus 39 ~~~~h~~~i~~~~~~--~~~l~s~~~dg~i~iw~~~~--~~~~~~~~~~~v~~~~~~--~~~l~-s~~~dg~i~vw~~~~ 111 (368)
.+.+|.+.|.+++++ +.++++++.|+.|++||+.+ ....+..|...+.+++|+ +++++ +++.|+.|++||+.+
T Consensus 164 ~~~~~~~~v~~~~~~~~~~~~~s~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~ 243 (433)
T 3bws_A 164 KYKKKLGFVETISIPEHNELWVSQMQANAVHVFDLKTLAYKATVDLTGKWSKILLYDPIRDLVYCSNWISEDISVIDRKT 243 (433)
T ss_dssp HHHTTCCEEEEEEEGGGTEEEEEEGGGTEEEEEETTTCCEEEEEECSSSSEEEEEEETTTTEEEEEETTTTEEEEEETTT
T ss_pred cccccCCceeEEEEcCCCEEEEEECCCCEEEEEECCCceEEEEEcCCCCCeeEEEEcCCCCEEEEEecCCCcEEEEECCC
Confidence 566899999999996 44899999999999999874 355667889999999998 66664 555899999999987
Q ss_pred CCccccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcCCCCEEEEEe--------CCCcEEEEEc
Q 047325 112 KNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCGLLYTAS--------WDRTFKVWRI 183 (368)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--------~d~~i~iwd~ 183 (368)
++...... +...+.+++|+|+++++++++ .|+.|++||+
T Consensus 244 ~~~~~~~~---------------------------------~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~ 290 (433)
T 3bws_A 244 KLEIRKTD---------------------------------KIGLPRGLLLSKDGKELYIAQFSASNQESGGGRLGIYSM 290 (433)
T ss_dssp TEEEEECC---------------------------------CCSEEEEEEECTTSSEEEEEEEESCTTCSCCEEEEEEET
T ss_pred CcEEEEec---------------------------------CCCCceEEEEcCCCCEEEEEECCCCccccCCCeEEEEEC
Confidence 65322211 334588999999999999988 4889999999
Q ss_pred cCCeEEEEeecCCCceEEEEeCCCC--eEEEEcCCCeEEEEEcCCCCCCcccccceeeccccccEEEEEEcCCCCEEEEe
Q 047325 184 SDSKCLESVSAHDDAVNSVVSSSEG--LIFTGSADGTVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSSSRSIVYCG 261 (368)
Q Consensus 184 ~~~~~~~~~~~~~~~v~~~~~~~~~--~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~ 261 (368)
.+++.+..+. +...+.+++|+|++ .+++++.|+.|++||++... ....+ .+...+.+++|+|++++++++
T Consensus 291 ~~~~~~~~~~-~~~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~~~------~~~~~-~~~~~~~~~~~s~dg~~l~~~ 362 (433)
T 3bws_A 291 DKEKLIDTIG-PPGNKRHIVSGNTENKIYVSDMCCSKIEVYDLKEKK------VQKSI-PVFDKPNTIALSPDGKYLYVS 362 (433)
T ss_dssp TTTEEEEEEE-EEECEEEEEECSSTTEEEEEETTTTEEEEEETTTTE------EEEEE-ECSSSEEEEEECTTSSEEEEE
T ss_pred CCCcEEeecc-CCCCcceEEECCCCCEEEEEecCCCEEEEEECCCCc------EEEEe-cCCCCCCeEEEcCCCCEEEEE
Confidence 9998877663 55678999999998 55677899999999998542 22333 356779999999999988888
Q ss_pred cC---------------CCcEEEEeCCCccccceeeeccceEEEEEEeCCCEEEEeeC-CCeEEEEecCC
Q 047325 262 SS---------------DGLVNFWEREKQLSHGGVLKGHKLAVLCLAAAGKLVFSGSA-DKTICVWRRDG 315 (368)
Q Consensus 262 ~~---------------dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-dg~i~iw~~~~ 315 (368)
+. ||.|++||+.+++.............++++|++++|++++. |+.|++|+++.
T Consensus 363 ~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~d~~i~v~~~~~ 432 (433)
T 3bws_A 363 CRGPNHPTEGYLKKGLVLGKVYVIDTTTDTVKEFWEAGNQPTGLDVSPDNRYLVISDFLDHQIRVYRRDG 432 (433)
T ss_dssp ECCCCCTTTCTTSCCSSCCEEEEEETTTTEEEEEEECSSSEEEEEECTTSCEEEEEETTTTEEEEEEETT
T ss_pred ecCCCccccccccccccceEEEEEECCCCcEEEEecCCCCCceEEEcCCCCEEEEEECCCCeEEEEEecC
Confidence 76 57999999988765543333333445677889999988775 99999998763
No 127
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=99.96 E-value=1.5e-27 Score=205.62 Aligned_cols=265 Identities=12% Similarity=0.023 Sum_probs=200.5
Q ss_pred CCCcee--eeccCcCCcEEEEEec----------------CCEEEEccCC------CcEEEEcCCc-ceecccCCCCCee
Q 047325 32 PQNGLI--GSLVREEGHIYSLAAS----------------KDLLYTGSDS------KNIRVWKNLK-EFCGFKASSGLVK 86 (368)
Q Consensus 32 ~~~~~~--~~~~~h~~~i~~~~~~----------------~~~l~s~~~d------g~i~iw~~~~-~~~~~~~~~~~v~ 86 (368)
..++.+ ..+.+|...+..+++. +..++.++.+ ++|++||... ....+..|...+.
T Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~g~~~~~~~~l~~~s~~~~~~~~~~i~i~d~~g~~~~~l~~~~~~v~ 182 (415)
T 2hqs_A 103 APGTVLAQNSYKVNKQWLRYAGHTASDEVFEKLTGIKGAFRTRIAYVVQTNGGQFPYELRVSDYDGYNQFVVHRSPQPLM 182 (415)
T ss_dssp STTCEEEEEEEEECGGGHHHHHHHHHHHHHHHHHSSCCCTTCEEEEEEECSSSSCCEEEEEEETTSCSCEEEEEESSCEE
T ss_pred CCCCEEeeeEEEcChhHHHHHHHHHHHHHHHHHcCCCCcCCCEEEEEEecCCCCccceEEEEcCCCCCCEEEeCCCCcce
Confidence 444444 4477777777766654 4566665554 7999999874 4566778999999
Q ss_pred EEEEe--CCEEEEEeCCC---eEEEEeecCCCccccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEE
Q 047325 87 AIVIS--GEKIFTGHQDG---KIRVWKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMS 161 (368)
Q Consensus 87 ~~~~~--~~~l~s~~~dg---~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 161 (368)
+++|+ |++|++++.|+ .|++||+.+++... +..|...+.+++
T Consensus 183 ~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg~~~~---------------------------------l~~~~~~~~~~~ 229 (415)
T 2hqs_A 183 SPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQ---------------------------------VASFPRHNGAPA 229 (415)
T ss_dssp EEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEE---------------------------------EECCSSCEEEEE
T ss_pred eeEEcCCCCEEEEEEecCCCcEEEEEECCCCcEEE---------------------------------eecCCCcccCEE
Confidence 99998 78999999885 99999998775321 223677899999
Q ss_pred EcCCCCEEE-EEeCCCc--EEEEEccCCeEEEEeecCCCceEEEEeCCCC-eEEEEcC-CC--eEEEEEcCCCCCCcccc
Q 047325 162 LDQDCGLLY-TASWDRT--FKVWRISDSKCLESVSAHDDAVNSVVSSSEG-LIFTGSA-DG--TVKVWKREQHGKGTKHS 234 (368)
Q Consensus 162 ~~~~~~~l~-~~~~d~~--i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~-dg--~i~i~d~~~~~~~~~~~ 234 (368)
|+|+++.|+ +++.++. |++||+.+++. ..+..|...+.+++|+|++ .|++++. ++ .|.+||+....
T Consensus 230 ~spdg~~la~~~~~~g~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~spdg~~l~~~s~~~g~~~i~~~d~~~~~------ 302 (415)
T 2hqs_A 230 FSPDGSKLAFALSKTGSLNLYVMDLASGQI-RQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGA------ 302 (415)
T ss_dssp ECTTSSEEEEEECTTSSCEEEEEETTTCCE-EECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSC------
T ss_pred EcCCCCEEEEEEecCCCceEEEEECCCCCE-EeCcCCCCcccceEECCCCCEEEEEECCCCCcEEEEEECCCCC------
Confidence 999999887 6666554 99999988876 5667788899999999999 6776665 45 67777887542
Q ss_pred cceeeccccccEEEEEEcCCCCEEEEecCC---CcEEEEeCCCccccceeeeccceEEEEEEeCCCEEEEeeCCC---eE
Q 047325 235 LAQTLLKQECAVTALVVSSSRSIVYCGSSD---GLVNFWEREKQLSHGGVLKGHKLAVLCLAAAGKLVFSGSADK---TI 308 (368)
Q Consensus 235 ~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d---g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg---~i 308 (368)
...+..+...+.+++|+|++++|++++.+ ..|++||+.++... ...........+++|++++|++++.++ .|
T Consensus 303 -~~~l~~~~~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~~~~-~l~~~~~~~~~~~spdg~~l~~~s~~~~~~~l 380 (415)
T 2hqs_A 303 -PQRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQ-VLSSTFLDETPSLAPNGTMVIYSSSQGMGSVL 380 (415)
T ss_dssp -CEECCCSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCEE-ECCCSSSCEEEEECTTSSEEEEEEEETTEEEE
T ss_pred -EEEEecCCCcccCeEECCCCCEEEEEECcCCceEEEEEECCCCCEE-EecCCCCcCCeEEcCCCCEEEEEEcCCCccEE
Confidence 23344456678899999999999988764 58999999876553 222223445577889999999888877 79
Q ss_pred EEEecCCCceeeeEeeeccccCeeEEEEecCCe
Q 047325 309 CVWRRDGAIHTCLSVLTGHTGPVKCLAVEEDRD 341 (368)
Q Consensus 309 ~iw~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~ 341 (368)
++||++.. ....+..|.+.|.+++|+|...
T Consensus 381 ~~~d~~g~---~~~~l~~~~~~v~~~~~~~~~~ 410 (415)
T 2hqs_A 381 NLVSTDGR---FKARLPATDGQVKFPAWSPYLH 410 (415)
T ss_dssp EEEETTSC---CEEECCCSSSEEEEEEECCCCC
T ss_pred EEEECCCC---cEEEeeCCCCCCcCCccccccc
Confidence 99998753 4667788999999999999754
No 128
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=99.96 E-value=1.8e-27 Score=205.08 Aligned_cols=259 Identities=12% Similarity=0.053 Sum_probs=190.5
Q ss_pred CcEEEEEecC---CEEEEcc----CCC----cEEEEcC--Ccc--e--ecccCCCCCeeEEEEe----------------
Q 047325 45 GHIYSLAASK---DLLYTGS----DSK----NIRVWKN--LKE--F--CGFKASSGLVKAIVIS---------------- 91 (368)
Q Consensus 45 ~~i~~~~~~~---~~l~s~~----~dg----~i~iw~~--~~~--~--~~~~~~~~~v~~~~~~---------------- 91 (368)
..+...+|.. +++++|+ .|| +|++||+ .+. + ..+.+|...+..+++.
T Consensus 63 ~~~~~~~w~~~g~~~~~~g~~~~~~~G~~~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~g~~~~~ 142 (415)
T 2hqs_A 63 QEVQPAAWSALGIDAVVVGQVTPNPDGSYNVAYQLVDTGGAPGTVLAQNSYKVNKQWLRYAGHTASDEVFEKLTGIKGAF 142 (415)
T ss_dssp GGCCHHHHHTTTCCEEEEEEEEECTTSCEEEEEEEEECSSSTTCEEEEEEEEECGGGHHHHHHHHHHHHHHHHHSSCCCT
T ss_pred cCcCHHHHHhcCCCEEEEEEEEECCCCeEEEEEEEEeCCCCCCCEEeeeEEEcChhHHHHHHHHHHHHHHHHHcCCCCcC
Confidence 3555566643 3777876 567 9999999 643 2 3467777777666554
Q ss_pred CCEEEEEeCC------CeEEEEeecCCCccccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcCC
Q 047325 92 GEKIFTGHQD------GKIRVWKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQD 165 (368)
Q Consensus 92 ~~~l~s~~~d------g~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 165 (368)
+..++.++.+ +.|++||++... ...+.+|...+.+++|+|+
T Consensus 143 ~~~l~~~s~~~~~~~~~~i~i~d~~g~~---------------------------------~~~l~~~~~~v~~~~~Spd 189 (415)
T 2hqs_A 143 RTRIAYVVQTNGGQFPYELRVSDYDGYN---------------------------------QFVVHRSPQPLMSPAWSPD 189 (415)
T ss_dssp TCEEEEEEECSSSSCCEEEEEEETTSCS---------------------------------CEEEEEESSCEEEEEECTT
T ss_pred CCEEEEEEecCCCCccceEEEEcCCCCC---------------------------------CEEEeCCCCcceeeEEcCC
Confidence 5677777664 799999987533 1233458899999999999
Q ss_pred CCEEEEEeCCC---cEEEEEccCCeEEEEeecCCCceEEEEeCCCC-eEE-EEcCCC--eEEEEEcCCCCCCccccccee
Q 047325 166 CGLLYTASWDR---TFKVWRISDSKCLESVSAHDDAVNSVVSSSEG-LIF-TGSADG--TVKVWKREQHGKGTKHSLAQT 238 (368)
Q Consensus 166 ~~~l~~~~~d~---~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~-~~~~dg--~i~i~d~~~~~~~~~~~~~~~ 238 (368)
+++|++++.++ .|++||+.+++.. .+..+...+.+++|+|+| .|+ +++.++ .|++||++... ...
T Consensus 190 g~~la~~s~~~~~~~i~~~d~~tg~~~-~l~~~~~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~~-------~~~ 261 (415)
T 2hqs_A 190 GSKLAYVTFESGRSALVIQTLANGAVR-QVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQ-------IRQ 261 (415)
T ss_dssp SSEEEEEECTTSSCEEEEEETTTCCEE-EEECCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCC-------EEE
T ss_pred CCEEEEEEecCCCcEEEEEECCCCcEE-EeecCCCcccCEEEcCCCCEEEEEEecCCCceEEEEECCCCC-------EEe
Confidence 99999999875 9999999998875 466688899999999999 566 666655 49999997642 345
Q ss_pred eccccccEEEEEEcCCCCEEEEecC-CC--cEEEEeCCCccccceeeeccceEEEEEEeCCCEEEEeeCC---CeEEEEe
Q 047325 239 LLKQECAVTALVVSSSRSIVYCGSS-DG--LVNFWEREKQLSHGGVLKGHKLAVLCLAAAGKLVFSGSAD---KTICVWR 312 (368)
Q Consensus 239 ~~~~~~~i~~~~~~~~~~~l~~~~~-dg--~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d---g~i~iw~ 312 (368)
+..+...+.+++|+|+++.|++++. ++ .|++||+.++.........+.....+++|++++|++++.+ ..|++||
T Consensus 262 l~~~~~~~~~~~~spdg~~l~~~s~~~g~~~i~~~d~~~~~~~~l~~~~~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d 341 (415)
T 2hqs_A 262 VTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAPQRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQD 341 (415)
T ss_dssp CCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCCEECCCSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEE
T ss_pred CcCCCCcccceEECCCCCEEEEEECCCCCcEEEEEECCCCCEEEEecCCCcccCeEECCCCCEEEEEECcCCceEEEEEE
Confidence 5667788999999999999888776 44 6788898876533212222333346778899999988764 5899999
Q ss_pred cCCCceeeeEeeeccccCeeEEEEecCCeeeecCCc
Q 047325 313 RDGAIHTCLSVLTGHTGPVKCLAVEEDRDSSSSTSS 348 (368)
Q Consensus 313 ~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~ 348 (368)
++++.. ..+..+. .+.+++|+|+|+.+++++.
T Consensus 342 ~~~~~~---~~l~~~~-~~~~~~~spdg~~l~~~s~ 373 (415)
T 2hqs_A 342 LATGGV---QVLSSTF-LDETPSLAPNGTMVIYSSS 373 (415)
T ss_dssp TTTCCE---EECCCSS-SCEEEEECTTSSEEEEEEE
T ss_pred CCCCCE---EEecCCC-CcCCeEEcCCCCEEEEEEc
Confidence 987632 3444554 8999999999998776653
No 129
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=99.95 E-value=1.5e-26 Score=205.18 Aligned_cols=274 Identities=12% Similarity=0.070 Sum_probs=201.2
Q ss_pred EEEEEecCCEEEEccCCCcEEEEcCCcc--eecccCCCCCeeEEEEe--CCEEEEEeCCCeEEEEee--cCCCccccccC
Q 047325 47 IYSLAASKDLLYTGSDSKNIRVWKNLKE--FCGFKASSGLVKAIVIS--GEKIFTGHQDGKIRVWKI--SPKNQSVHKRA 120 (368)
Q Consensus 47 i~~~~~~~~~l~s~~~dg~i~iw~~~~~--~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~vw~~--~~~~~~~~~~~ 120 (368)
...+..++.++++++.|++|.+||..+. +..+..+.. +..++|+ +++|++++.|++|.+||+ .+.+.....
T Consensus 142 ~~~~~p~~~~~vs~~~d~~V~v~D~~t~~~~~~i~~g~~-~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~~~~~~i-- 218 (543)
T 1nir_A 142 LNDLDLPNLFSVTLRDAGQIALVDGDSKKIVKVIDTGYA-VHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEI-- 218 (543)
T ss_dssp CSCCCGGGEEEEEEGGGTEEEEEETTTCCEEEEEECSTT-EEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEE--
T ss_pred ccccCCCCEEEEEEcCCCeEEEEECCCceEEEEEecCcc-cceEEECCCCCEEEEECCCCeEEEEECcCCCCcEEEEE--
Confidence 3333334558899999999999998743 445553322 7888887 889999999999999999 544321111
Q ss_pred CccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcC----CCCEEEEEeC-CCcEEEEEccCCeEEEEeecC
Q 047325 121 GTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQ----DCGLLYTASW-DRTFKVWRISDSKCLESVSAH 195 (368)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~----~~~~l~~~~~-d~~i~iwd~~~~~~~~~~~~~ 195 (368)
.+...+..++|+| +++++++++. +++|.+||..+++++..+..+
T Consensus 219 -------------------------------~~g~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~~~~i~~~ 267 (543)
T 1nir_A 219 -------------------------------KIGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTR 267 (543)
T ss_dssp -------------------------------ECCSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECC
T ss_pred -------------------------------ecCCCcceEEeCCCcCCCCCEEEEEEccCCeEEEEeccccccceeeccc
Confidence 1445678999999 9999999884 899999999999998888642
Q ss_pred -----------CCceEEEEeCCCC--eEEEEcCCCeEEEEEcCCCCCCcccccceeeccccccEEEEEEcCCCCEEEEe-
Q 047325 196 -----------DDAVNSVVSSSEG--LIFTGSADGTVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSSSRSIVYCG- 261 (368)
Q Consensus 196 -----------~~~v~~~~~~~~~--~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~- 261 (368)
...+..+.+++++ .+++...++.|.+||...... .......+...+..+.|+|++++|+++
T Consensus 268 g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~~~g~i~vvd~~~~~~-----l~~~~i~~~~~~~~~~~spdg~~l~va~ 342 (543)
T 1nir_A 268 GMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDN-----LTVTSIGAAPFLHDGGWDSSHRYFMTAA 342 (543)
T ss_dssp EECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECTTSSS-----CEEEEEECCSSCCCEEECTTSCEEEEEE
T ss_pred CcccCccccccCCceEEEEECCCCCEEEEEECCCCeEEEEEecCCCc-----ceeEEeccCcCccCceECCCCCEEEEEe
Confidence 2368899999977 777888899999999986532 111122345567789999999977654
Q ss_pred cCCCcEEEEeCCCccccceeee---ccceEEEE-EEeC-CCEEEEee-CCCeEEEEecCCCc-----eeeeEeeeccccC
Q 047325 262 SSDGLVNFWEREKQLSHGGVLK---GHKLAVLC-LAAA-GKLVFSGS-ADKTICVWRRDGAI-----HTCLSVLTGHTGP 330 (368)
Q Consensus 262 ~~dg~i~i~d~~~~~~~~~~~~---~~~~~~~~-~~~~-~~~l~~~~-~dg~i~iw~~~~~~-----~~~~~~~~~h~~~ 330 (368)
..++.|.+||..+++....... .|...... ++|+ +.+++++. .|++|.+||+++.. .+.++++..|...
T Consensus 343 ~~~~~v~v~D~~tg~l~~~i~~g~~ph~g~g~~~~~p~~g~~~~s~~~~d~~V~v~d~~~~~~~~~~~~~v~~l~~~g~~ 422 (543)
T 1nir_A 343 NNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANFVHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGG 422 (543)
T ss_dssp GGGTEEEEEETTTTEEEEEEECSSSBCCTTCEEEEETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSC
T ss_pred cCCCeEEEEECCCCeEEEeeccCCCCCCCCCcccCCCCCccEEEeccCCCceEEEEEeCCCCCchhcCeEEEEEEcCCCC
Confidence 5689999999998765533322 25433333 4566 66677765 68999999998721 4788999999999
Q ss_pred eeEEEEecCCeeeecCC---------cceEEEEEeeCC
Q 047325 331 VKCLAVEEDRDSSSSTS---------SCAQRWIVYSGS 359 (368)
Q Consensus 331 v~~l~~~~~~~~~~~~~---------~~~~~w~l~sg~ 359 (368)
+..++|+|+++.+.++. ..+.+|.+.++.
T Consensus 423 ~~~v~~~pdg~~l~v~~~~~~~~~~~~~v~v~d~~~~~ 460 (543)
T 1nir_A 423 SLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLD 460 (543)
T ss_dssp CCCEECCTTCCEEEECCTTCSSHHHHTCEEEEETTCTT
T ss_pred ceEEEcCCCCCcEEEecCCCCCcccCceEEEEECCCCC
Confidence 99999999999877654 356666665543
No 130
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=99.95 E-value=1.6e-25 Score=184.40 Aligned_cols=245 Identities=14% Similarity=0.091 Sum_probs=179.0
Q ss_pred EccCCCcEEEEcCCcc-eecccCCCCCeeEEEEe--CCEEEEEeCCCeEEEEeecC-CCccccccCCccccceeeeeccC
Q 047325 59 TGSDSKNIRVWKNLKE-FCGFKASSGLVKAIVIS--GEKIFTGHQDGKIRVWKISP-KNQSVHKRAGTLPTLKDIFKSSI 134 (368)
Q Consensus 59 s~~~dg~i~iw~~~~~-~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~vw~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 134 (368)
+++.|++|++||+... ...+..|...|.+++|+ +++|++++ ++.|.+||+.+ ++........
T Consensus 17 ~~~~~~~i~~~d~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~------------- 82 (297)
T 2ojh_A 17 GGSMRSSIEIFNIRTRKMRVVWQTPELFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDPSPEKVDTGF------------- 82 (297)
T ss_dssp -CCCCEEEEEEETTTTEEEEEEEESSCCEEEEECTTSSEEEEEE-TTEEEEEESSSCCSCEECCCTT-------------
T ss_pred CCCcceeEEEEeCCCCceeeeccCCcceEeeEECCCCCEEEEEc-CCeEEEEeCCCCCCceEecccc-------------
Confidence 4578999999998753 44566788999999998 77888876 88999999988 6533222110
Q ss_pred CCCceeEecccceeeeeecCCCEeEEEEcCCCCEEEEEe--CCCcEEEE--EccCCeEEEEeecCCCceEEEEeCCCC-e
Q 047325 135 KPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCGLLYTAS--WDRTFKVW--RISDSKCLESVSAHDDAVNSVVSSSEG-L 209 (368)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--~d~~i~iw--d~~~~~~~~~~~~~~~~v~~~~~~~~~-~ 209 (368)
+...+.+++|+|++++|++++ .++...|| |+.+++ ...+..+ ..+..++|+|++ .
T Consensus 83 ------------------~~~~~~~~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~-~~~~~~~~spdg~~ 142 (297)
T 2ojh_A 83 ------------------ATICNNDHGISPDGALYAISDKVEFGKSAIYLLPSTGGT-PRLMTKN-LPSYWHGWSPDGKS 142 (297)
T ss_dssp ------------------CCCBCSCCEECTTSSEEEEEECTTTSSCEEEEEETTCCC-CEECCSS-SSEEEEEECTTSSE
T ss_pred ------------------ccccccceEECCCCCEEEEEEeCCCCcceEEEEECCCCc-eEEeecC-CCccceEECCCCCE
Confidence 246788999999999999998 33445555 444544 3444433 348889999999 5
Q ss_pred EE-EEcCCCeEEEEEcCCCCCCcccccceeeccccccEEEEEEcCCCCEEEEec-CCCcEEEEeCCCccccceeeeccce
Q 047325 210 IF-TGSADGTVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSSSRSIVYCGS-SDGLVNFWEREKQLSHGGVLKGHKL 287 (368)
Q Consensus 210 l~-~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~ 287 (368)
|+ ++..++.+++|+++.... ....+..+...+.+++|+|+++.|+.++ .++.+++|++.........+..|..
T Consensus 143 l~~~~~~~~~~~l~~~~~~~~-----~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 217 (297)
T 2ojh_A 143 FTYCGIRDQVFDIYSMDIDSG-----VETRLTHGEGRNDGPDYSPDGRWIYFNSSRTGQMQIWRVRVDGSSVERITDSAY 217 (297)
T ss_dssp EEEEEEETTEEEEEEEETTTC-----CEEECCCSSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCEEECCCCSE
T ss_pred EEEEECCCCceEEEEEECCCC-----cceEcccCCCccccceECCCCCEEEEEecCCCCccEEEECCCCCCcEEEecCCc
Confidence 55 788899999999754321 2344556777899999999999887665 5889999987632222234444554
Q ss_pred EE--EEEEeCCCEEEEeeCC-----------CeEEEEecCCCceeeeEeeeccccCeeEEEEecCCee
Q 047325 288 AV--LCLAAAGKLVFSGSAD-----------KTICVWRRDGAIHTCLSVLTGHTGPVKCLAVEEDRDS 342 (368)
Q Consensus 288 ~~--~~~~~~~~~l~~~~~d-----------g~i~iw~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~ 342 (368)
.+ .+++|++++|++++.+ +.|++||+.+.....+..+.+|...+.+++|+|+++.
T Consensus 218 ~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~ 285 (297)
T 2ojh_A 218 GDWFPHPSPSGDKVVFVSYDADVFDHPRDLDVRVQLMDMDGGNVETLFDLFGGQGTMNSPNWSPDGDE 285 (297)
T ss_dssp EEEEEEECTTSSEEEEEEEETTCCSCCSSEEEEEEEEETTSCSCEEEEEEEESTTTSCSCCBCTTSSE
T ss_pred ccCCeEECCCCCEEEEEEcCCCCCcccccCceEEEEEecCCCCceeeeccCCCCcccccceECCCCCE
Confidence 44 5667799999888766 5699999988765666667788899999999999994
No 131
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=99.94 E-value=1.5e-24 Score=182.61 Aligned_cols=267 Identities=13% Similarity=0.229 Sum_probs=176.7
Q ss_pred EEEEccCCCcEEEEcCC--cc--eecccCCCCCeeEEEEe--CCEEEEEeCC-CeEEEEeec--CCCccccccCCccccc
Q 047325 56 LLYTGSDSKNIRVWKNL--KE--FCGFKASSGLVKAIVIS--GEKIFTGHQD-GKIRVWKIS--PKNQSVHKRAGTLPTL 126 (368)
Q Consensus 56 ~l~s~~~dg~i~iw~~~--~~--~~~~~~~~~~v~~~~~~--~~~l~s~~~d-g~i~vw~~~--~~~~~~~~~~~~~~~~ 126 (368)
++++++.|+.|++|++. .. ......+...+.+++|+ +++|++++.+ +.|.+|+++ ++......
T Consensus 7 l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~-------- 78 (343)
T 1ri6_A 7 VYIASPESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAA-------- 78 (343)
T ss_dssp EEEEEGGGTEEEEEEECTTSCEEEEEEEECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEE--------
T ss_pred EEEeCCCCCeEEEEEECCCCcEEEeeeEecCCCCceEEECCCCCEEEEeecCCCeEEEEEecCCCCceeecc--------
Confidence 45555889999999884 21 22223567788889997 7788888886 999999997 33311100
Q ss_pred eeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcCCCCEEEEEeC-CCcEEEEEcc---CCeEEEEeecCCCceEEE
Q 047325 127 KDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCGLLYTASW-DRTFKVWRIS---DSKCLESVSAHDDAVNSV 202 (368)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d~~i~iwd~~---~~~~~~~~~~~~~~v~~~ 202 (368)
.+. ....+..++|+|+++++++++. ++.|.+||+. +.+.+..+..+ ..+.++
T Consensus 79 ----------------------~~~-~~~~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~-~~~~~~ 134 (343)
T 1ri6_A 79 ----------------------ESA-LPGSLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGL-DGCHSA 134 (343)
T ss_dssp ----------------------EEE-CSSCCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECCC-TTBCCC
T ss_pred ----------------------ccc-cCCCCcEEEEcCCCCEEEEEecCCCeEEEEECCCCccccccccccCC-CCceEE
Confidence 011 2237789999999998877765 7889999994 44455555433 458899
Q ss_pred EeCCCC-eEEEEc-CCCeEEEEEcCCCCCCcccccceeeccccccEEEEEEcCCCCEEEEe-cCCCcEEEEeCCC--ccc
Q 047325 203 VSSSEG-LIFTGS-ADGTVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSSSRSIVYCG-SSDGLVNFWEREK--QLS 277 (368)
Q Consensus 203 ~~~~~~-~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~~dg~i~i~d~~~--~~~ 277 (368)
+|+|++ .+++++ .++.|.+||+...+.................+..++|+|++++++++ ..++.|.+|+++. +..
T Consensus 135 ~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g~~ 214 (343)
T 1ri6_A 135 NISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNI 214 (343)
T ss_dssp EECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCC
T ss_pred EECCCCCEEEEecCCCCEEEEEEecCCCceeeecccccccCCCCCcceEEECCCCCEEEEEeCCCCEEEEEEecCCCCcE
Confidence 999999 666666 89999999997632200000001112233568889999999977554 5889999999953 221
Q ss_pred c-ceeee----cc----ceEEEEEEeCCCEEE-EeeCCCeEEEEecC--CCceeeeEeeeccccCeeEEEEecCCeeeec
Q 047325 278 H-GGVLK----GH----KLAVLCLAAAGKLVF-SGSADKTICVWRRD--GAIHTCLSVLTGHTGPVKCLAVEEDRDSSSS 345 (368)
Q Consensus 278 ~-~~~~~----~~----~~~~~~~~~~~~~l~-~~~~dg~i~iw~~~--~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~ 345 (368)
. ..... ++ ....++++|++++|+ ++..++.|++|+++ ....+.+..+..+.. +.+++|+|+++.+++
T Consensus 215 ~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~-~~~~~~s~dg~~l~~ 293 (343)
T 1ri6_A 215 ECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQPTETQ-PRGFNVDHSGKYLIA 293 (343)
T ss_dssp EEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCEEEEEEEECSSS-CCCEEECTTSSEEEE
T ss_pred EEEeeccccCccccccCCccceEECCCCCEEEEEecCCCEEEEEEEcCCCCceEEeeeecCCCc-cceEEECCCCCEEEE
Confidence 1 11111 11 122367888898777 45579999999998 333455556655554 899999999986554
Q ss_pred CC---cceEEEEE
Q 047325 346 TS---SCAQRWIV 355 (368)
Q Consensus 346 ~~---~~~~~w~l 355 (368)
++ +.+.+|.+
T Consensus 294 ~~~~~~~v~v~~~ 306 (343)
T 1ri6_A 294 AGQKSHHISVYEI 306 (343)
T ss_dssp ECTTTCEEEEEEE
T ss_pred ecCCCCeEEEEEE
Confidence 43 34555544
No 132
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=99.94 E-value=9e-24 Score=177.02 Aligned_cols=265 Identities=8% Similarity=0.085 Sum_probs=179.2
Q ss_pred EEEEccCCCcEEEEcCCcc--eecccCCCCCeeEEEEe--CCEEEEEeC-CCeEEEEeecCCCccccccCCccccceeee
Q 047325 56 LLYTGSDSKNIRVWKNLKE--FCGFKASSGLVKAIVIS--GEKIFTGHQ-DGKIRVWKISPKNQSVHKRAGTLPTLKDIF 130 (368)
Q Consensus 56 ~l~s~~~dg~i~iw~~~~~--~~~~~~~~~~v~~~~~~--~~~l~s~~~-dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~ 130 (368)
.+++++.++.|++||..+. ......+...+ .++|+ ++++++++. ++.|.+||+.+++...
T Consensus 12 ~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~-------------- 76 (331)
T 3u4y_A 12 GIVVEQHLRRISFFSTDTLEILNQITLGYDFV-DTAITSDCSNVVVTSDFCQTLVQIETQLEPPKV-------------- 76 (331)
T ss_dssp EEEEEGGGTEEEEEETTTCCEEEEEECCCCEE-EEEECSSSCEEEEEESTTCEEEEEECSSSSCEE--------------
T ss_pred EEEEecCCCeEEEEeCcccceeeeEEccCCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCCCceeE--------------
Confidence 6888899999999998743 33444555556 88887 666766665 8999999998775310
Q ss_pred eccCCCCceeEecccceeeeeecCCCEeEEEEcCCCCEEEEEeCCC---cEEEEEccCCeEEEEeecCCCceEEEEeCCC
Q 047325 131 KSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCGLLYTASWDR---TFKVWRISDSKCLESVSAHDDAVNSVVSSSE 207 (368)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~---~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~ 207 (368)
..+..+..+..+++|+|++++++++..++ .|.+||+.+++.+..+..+ ....+++|+|+
T Consensus 77 -----------------~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~v~d~~~~~~~~~~~~~-~~~~~~~~spd 138 (331)
T 3u4y_A 77 -----------------VAIQEGQSSMADVDITPDDQFAVTVTGLNHPFNMQSYSFLKNKFISTIPIP-YDAVGIAISPN 138 (331)
T ss_dssp -----------------EEEEECSSCCCCEEECTTSSEEEECCCSSSSCEEEEEETTTTEEEEEEECC-TTEEEEEECTT
T ss_pred -----------------EecccCCCCccceEECCCCCEEEEecCCCCcccEEEEECCCCCeEEEEECC-CCccceEECCC
Confidence 11112444444599999999999655553 8999999999988887754 45689999999
Q ss_pred C-eEEEE-cCCCe-EEEEEcCCCCCCcccccceeeccccccEEEEEEcCCCCEEE-EecCCCcEEEEeCCCccc---cce
Q 047325 208 G-LIFTG-SADGT-VKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSSSRSIVY-CGSSDGLVNFWEREKQLS---HGG 280 (368)
Q Consensus 208 ~-~l~~~-~~dg~-i~i~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~-~~~~dg~i~i~d~~~~~~---~~~ 280 (368)
+ .++++ ..++. |.+|++...+...... .........+..++|+|++++++ ++..++.|.+||+++++. ...
T Consensus 139 g~~l~~~~~~~~~~i~~~~~~~~g~~~~~~--~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~~~~~~~ 216 (331)
T 3u4y_A 139 GNGLILIDRSSANTVRRFKIDADGVLFDTG--QEFISGGTRPFNITFTPDGNFAFVANLIGNSIGILETQNPENITLLNA 216 (331)
T ss_dssp SSCEEEEEETTTTEEEEEEECTTCCEEEEE--EEEECSSSSEEEEEECTTSSEEEEEETTTTEEEEEECSSTTSCEEEEE
T ss_pred CCEEEEEecCCCceEEEEEECCCCcEeecC--CccccCCCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcccceeee
Confidence 9 45444 55577 9999998543211111 12223345578999999999655 455689999999987665 322
Q ss_pred eeeccceEEEEEEeCCCEEEEe-eCCCeEEEEecCCCceeeeEeeecc----ccC---eeEEEEecCCeeeecC---Ccc
Q 047325 281 VLKGHKLAVLCLAAAGKLVFSG-SADKTICVWRRDGAIHTCLSVLTGH----TGP---VKCLAVEEDRDSSSST---SSC 349 (368)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~l~~~-~~dg~i~iw~~~~~~~~~~~~~~~h----~~~---v~~l~~~~~~~~~~~~---~~~ 349 (368)
...+....-++++|++++|+++ ..++.|.+||+.++....+..+..+ ..+ ...++|+|+++.+..+ ++.
T Consensus 217 ~~~~~~~~~~~~spdg~~l~v~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~ 296 (331)
T 3u4y_A 217 VGTNNLPGTIVVSRDGSTVYVLTESTVDVFNFNQLSGTLSFVKSFGHGLLIDPRPLFGANQMALNKTETKLFISANISRE 296 (331)
T ss_dssp EECSSCCCCEEECTTSSEEEEECSSEEEEEEEETTTTEEEEEEEEECCCCCCCGGGTTCCCEEECTTSSEEEEEETTTTE
T ss_pred ccCCCCCceEEECCCCCEEEEEEcCCCEEEEEECCCCceeeecccccccccCCCCcccccceEECCCCCEEEEecCCCCc
Confidence 2222233347788999976655 4578899999987754445444333 222 3568999999865332 223
Q ss_pred eEEEEE
Q 047325 350 AQRWIV 355 (368)
Q Consensus 350 ~~~w~l 355 (368)
+.+|.+
T Consensus 297 v~v~d~ 302 (331)
T 3u4y_A 297 LKVFTI 302 (331)
T ss_dssp EEEEET
T ss_pred EEEEEe
Confidence 555544
No 133
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=99.93 E-value=7.7e-24 Score=196.55 Aligned_cols=271 Identities=10% Similarity=0.020 Sum_probs=194.6
Q ss_pred CCcEEEEEecCC--EEEEccC-CC-----cEEEEcCCcce--ecccCCC------------------------CCeeEEE
Q 047325 44 EGHIYSLAASKD--LLYTGSD-SK-----NIRVWKNLKEF--CGFKASS------------------------GLVKAIV 89 (368)
Q Consensus 44 ~~~i~~~~~~~~--~l~s~~~-dg-----~i~iw~~~~~~--~~~~~~~------------------------~~v~~~~ 89 (368)
...|.+++|+++ +|++++. |+ .|++||+.+.. ..+..+. ..+.+++
T Consensus 36 ~~~~~~~~~SpdG~~la~~~~~d~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 115 (741)
T 2ecf_A 36 GPTLMKPKVAPDGSRVTFLRGKDSDRNQLDLWSYDIGSGQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIVDYQ 115 (741)
T ss_dssp CCCCEEEEECTTSSEEEEEECCSSCTTEEEEEEEETTTCCEEEEECGGGTC--------------------CCEESCCCE
T ss_pred CCCCCCceEecCCCEEEEEeccCCCCcccEEEEEECCCCceeEccchhhcccccccccchhhhhhhhhhhccccCcceeE
Confidence 456889999755 8998888 88 89999987432 2222222 2377888
Q ss_pred Ee--CCEEEEEeCCCeEEEEeecCC---CccccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcC
Q 047325 90 IS--GEKIFTGHQDGKIRVWKISPK---NQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQ 164 (368)
Q Consensus 90 ~~--~~~l~s~~~dg~i~vw~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 164 (368)
|+ |++|++++. +.|.+||+.++ .... +..|...+..++|+|
T Consensus 116 ~SpDg~~l~~~~~-~~i~~~d~~~~~~~~~~~---------------------------------l~~~~~~~~~~~~SP 161 (741)
T 2ecf_A 116 WSPDAQRLLFPLG-GELYLYDLKQEGKAAVRQ---------------------------------LTHGEGFATDAKLSP 161 (741)
T ss_dssp ECTTSSEEEEEET-TEEEEEESSSCSTTSCCB---------------------------------CCCSSSCEEEEEECT
T ss_pred ECCCCCEEEEEeC-CcEEEEECCCCCcceEEE---------------------------------cccCCcccccccCCC
Confidence 88 788888886 99999999877 3211 112667899999999
Q ss_pred CCCEEEEEeCCCcEEEEEccCCeEEEEeecCCCc----------------eEEEEeCCCC-eEEEEcCCC----------
Q 047325 165 DCGLLYTASWDRTFKVWRISDSKCLESVSAHDDA----------------VNSVVSSSEG-LIFTGSADG---------- 217 (368)
Q Consensus 165 ~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~----------------v~~~~~~~~~-~l~~~~~dg---------- 217 (368)
||++|+.++ ++.|++||+.+++.......+... +..+.|+||| .|++++.|+
T Consensus 162 DG~~la~~~-~~~i~~~d~~~g~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~ 240 (741)
T 2ecf_A 162 KGGFVSFIR-GRNLWVIDLASGRQMQLTADGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYE 240 (741)
T ss_dssp TSSEEEEEE-TTEEEEEETTTTEEEECCCCCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEE
T ss_pred CCCEEEEEe-CCcEEEEecCCCCEEEeccCCccceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCC
Confidence 999999887 468999999998877655444332 4779999999 788877665
Q ss_pred -----------------------eEEEEEcCC-CCCCcccccceeeccccccEEEEEEcCCCCEEEEecC-----CCcEE
Q 047325 218 -----------------------TVKVWKREQ-HGKGTKHSLAQTLLKQECAVTALVVSSSRSIVYCGSS-----DGLVN 268 (368)
Q Consensus 218 -----------------------~i~i~d~~~-~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-----dg~i~ 268 (368)
.|.+||+.. ... ........+...+..++| ||+++|++++. +..|+
T Consensus 241 ~~p~~~~~~~~~~~~~g~~~~~~~l~~~d~~~~~~~----~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~ 315 (741)
T 2ecf_A 241 VYADRTDVIEQRYPAAGDANVQVKLGVISPAEQAQT----QWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLV 315 (741)
T ss_dssp ECSSCEEEEEEECCBTTSCCCEEEEEEECSSTTCCC----EEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEE
T ss_pred CCCCcccceEeecCCCCCCCCeeEEEEEECCCCCce----EEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEE
Confidence 788889876 421 011111146778999999 99999987654 56799
Q ss_pred EEeCCCccccceeeeccce------EEEEEEeCCCEEEEeeCCCeEEEEecCCCceeeeEeeeccccCeeEE-EEecCCe
Q 047325 269 FWEREKQLSHGGVLKGHKL------AVLCLAAAGKLVFSGSADKTICVWRRDGAIHTCLSVLTGHTGPVKCL-AVEEDRD 341 (368)
Q Consensus 269 i~d~~~~~~~~~~~~~~~~------~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~l-~~~~~~~ 341 (368)
+||+.++.... ....+.. ....++||++++++++.||.+++|.++... . ...+..|...|..+ .|+|+++
T Consensus 316 ~~d~~~g~~~~-~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~~~~~-~-~~~l~~~~~~v~~~~~~s~dg~ 392 (741)
T 2ecf_A 316 EVTLASNQQRV-LAHETSPTWVPLHNSLRFLDDGSILWSSERTGFQHLYRIDSKG-K-AAALTHGNWSVDELLAVDEKAG 392 (741)
T ss_dssp EEETTTCCEEE-EEEEECSSCCCCCSCCEECTTSCEEEEECTTSSCEEEEECSSS-C-EEESCCSSSCEEEEEEEETTTT
T ss_pred EEECCCCceEE-EEEcCCCCcCCcCCceEECCCCeEEEEecCCCccEEEEEcCCC-C-eeeeeecceEEEeEeEEeCCCC
Confidence 99998875442 3322221 236788999999999999988898876432 3 56677788888887 5999998
Q ss_pred eeec-CC--c--ceEEEEEee
Q 047325 342 SSSS-TS--S--CAQRWIVYS 357 (368)
Q Consensus 342 ~~~~-~~--~--~~~~w~l~s 357 (368)
.++. ++ + ..++|.+-.
T Consensus 393 ~l~~~~~~~~~~~~~l~~~~~ 413 (741)
T 2ecf_A 393 LAYFRAGIESARESQIYAVPL 413 (741)
T ss_dssp EEEEEECSSCTTCBEEEEEET
T ss_pred EEEEEEeCCCCceEEEEEEEc
Confidence 6542 22 2 456777653
No 134
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=99.92 E-value=9.7e-22 Score=166.12 Aligned_cols=266 Identities=10% Similarity=0.066 Sum_probs=186.4
Q ss_pred CCcEEEEEecCC--EEEEccC-------CCcEEEEcCCcc--eecccCCCCCeeEEEEe--CCEEE-EEeCCCeEEEEee
Q 047325 44 EGHIYSLAASKD--LLYTGSD-------SKNIRVWKNLKE--FCGFKASSGLVKAIVIS--GEKIF-TGHQDGKIRVWKI 109 (368)
Q Consensus 44 ~~~i~~~~~~~~--~l~s~~~-------dg~i~iw~~~~~--~~~~~~~~~~v~~~~~~--~~~l~-s~~~dg~i~vw~~ 109 (368)
...+..++++++ ++++++. ++.|.+||..+. ...+.. ...+..++++ +++++ +...++.|.+||.
T Consensus 40 ~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~ 118 (353)
T 3vgz_A 40 GKGAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEVTQAIHN-DLKPFGATINNTTQTLWFGNTVNSAVTAIDA 118 (353)
T ss_dssp ESSEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCCEEEEEEE-SSCCCSEEEETTTTEEEEEETTTTEEEEEET
T ss_pred ccCccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEEEec-CCCcceEEECCCCCEEEEEecCCCEEEEEeC
Confidence 456778888754 6666553 568999998743 233332 3346677777 66555 4555799999999
Q ss_pred cCCCccccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcCCCCEEEEEe--CCCcEEEEEccCCe
Q 047325 110 SPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCGLLYTAS--WDRTFKVWRISDSK 187 (368)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--~d~~i~iwd~~~~~ 187 (368)
.+++.............. ......+.+++|+|+++++++++ .++.|.+||+.+++
T Consensus 119 ~~~~~~~~~~~~~~~~~~-----------------------~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~~ 175 (353)
T 3vgz_A 119 KTGEVKGRLVLDDRKRTE-----------------------EVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGNIK 175 (353)
T ss_dssp TTCCEEEEEESCCCCCCS-----------------------SCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTTTE
T ss_pred CCCeeEEEEecCCCcccc-----------------------ccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCCCc
Confidence 887653332221000000 00112367899999999887776 47889999999999
Q ss_pred EEEEeecCCCceEEEEeCCCC-eEEEEcCCCeEEEEEcCCCCCCcccccceeec----cccccEEEEEEcCCCCEEEEec
Q 047325 188 CLESVSAHDDAVNSVVSSSEG-LIFTGSADGTVKVWKREQHGKGTKHSLAQTLL----KQECAVTALVVSSSRSIVYCGS 262 (368)
Q Consensus 188 ~~~~~~~~~~~v~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~----~~~~~i~~~~~~~~~~~l~~~~ 262 (368)
.+..+..+...+.+++++|++ .+++++.++.|.+||+.... ...... ++...+..++|+|+++++++++
T Consensus 176 ~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~i~~~d~~~~~------~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~ 249 (353)
T 3vgz_A 176 LKTAIQNTGKMSTGLALDSEGKRLYTTNADGELITIDTADNK------ILSRKKLLDDGKEHFFINISLDTARQRAFITD 249 (353)
T ss_dssp EEEEECCCCTTCCCCEEETTTTEEEEECTTSEEEEEETTTTE------EEEEEECCCSSSCCCEEEEEEETTTTEEEEEE
T ss_pred eEEEecCCCCccceEEECCCCCEEEEEcCCCeEEEEECCCCe------EEEEEEcCCCCCCcccceEEECCCCCEEEEEe
Confidence 998887666668899999999 88888999999999998652 222222 2455688899999999777665
Q ss_pred C-CCcEEEEeCCCccccceeeeccceEEEEEEeCCCEEEEee-CCCeEEEEecCCCceeeeEeeeccccCeeEEEEecCC
Q 047325 263 S-DGLVNFWEREKQLSHGGVLKGHKLAVLCLAAAGKLVFSGS-ADKTICVWRRDGAIHTCLSVLTGHTGPVKCLAVEEDR 340 (368)
Q Consensus 263 ~-dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~l~~~~~~ 340 (368)
. ++.|.+||..+++.......+ .....++++++++++++. .++.|.+||..+. +.+..+.. ...+.+++|+|++
T Consensus 250 ~~~~~v~~~d~~~~~~~~~~~~~-~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~--~~~~~~~~-~~~~~~~~~s~dg 325 (353)
T 3vgz_A 250 SKAAEVLVVDTRNGNILAKVAAP-ESLAVLFNPARNEAYVTHRQAGKVSVIDAKSY--KVVKTFDT-PTHPNSLALSADG 325 (353)
T ss_dssp SSSSEEEEEETTTCCEEEEEECS-SCCCEEEETTTTEEEEEETTTTEEEEEETTTT--EEEEEEEC-CSEEEEEEECTTS
T ss_pred CCCCEEEEEECCCCcEEEEEEcC-CCceEEECCCCCEEEEEECCCCeEEEEECCCC--eEEEEEec-CCCCCeEEEcCCC
Confidence 5 489999999887655333333 334478899998665555 6899999998876 55555543 3468999999999
Q ss_pred eee
Q 047325 341 DSS 343 (368)
Q Consensus 341 ~~~ 343 (368)
+.+
T Consensus 326 ~~l 328 (353)
T 3vgz_A 326 KTL 328 (353)
T ss_dssp CEE
T ss_pred CEE
Confidence 854
No 135
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=99.91 E-value=2.6e-22 Score=192.46 Aligned_cols=272 Identities=11% Similarity=0.086 Sum_probs=200.3
Q ss_pred eeeccCcCCcEEEEEecCC-EEEEccCCCcEEEEcCC---cceecccCCCCCeeEEEEe--CCEEEEEeCCCeEEEEeec
Q 047325 37 IGSLVREEGHIYSLAASKD-LLYTGSDSKNIRVWKNL---KEFCGFKASSGLVKAIVIS--GEKIFTGHQDGKIRVWKIS 110 (368)
Q Consensus 37 ~~~~~~h~~~i~~~~~~~~-~l~s~~~dg~i~iw~~~---~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~vw~~~ 110 (368)
...+.+|.+.+.++.|+++ ++++++.|+.++||.+. .....+..|. .+...+|+ |+.|+.+ .++.|.+|++.
T Consensus 196 ~~~l~~~~~~v~~~~~s~d~l~~~~~~dg~~~l~~~~~~g~~~~~l~~~~-~~~~~~~SpDG~~la~~-~~~~i~~~d~~ 273 (1045)
T 1k32_A 196 FKKIVDMSTHVSSPVIVGHRIYFITDIDGFGQIYSTDLDGKDLRKHTSFT-DYYPRHLNTDGRRILFS-KGGSIYIFNPD 273 (1045)
T ss_dssp EEEEECCSSCCEEEEEETTEEEEEECTTSSCEEEEEETTSCSCEECCCCC-SSCEEEEEESSSCEEEE-ETTEEEEECTT
T ss_pred eEECcCCCCcccceEEeCCEEEEEEeccCceEEEEEeCCCCcceEecCCC-CcceeeEcCCCCEEEEE-eCCEEEEecCC
Confidence 4456899999999999988 56677888999999753 2334444444 34555665 7778877 48999999984
Q ss_pred CCCccccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEc-CCCCEEEEEeCCCcEEEEEccCCeEE
Q 047325 111 PKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLD-QDCGLLYTASWDRTFKVWRISDSKCL 189 (368)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~l~~~~~d~~i~iwd~~~~~~~ 189 (368)
..... ...... ......+..|...+.+++|+ |+++.|++++ ++.|.+|++..++..
T Consensus 274 ~~~l~-~l~~~~---------------------~~~~~~~~~~~~~v~~~~~S~pdG~~la~~~-~~~i~~~~~~~~~~~ 330 (1045)
T 1k32_A 274 TEKIE-KIEIGD---------------------LESPEDRIISIPSKFAEDFSPLDGDLIAFVS-RGQAFIQDVSGTYVL 330 (1045)
T ss_dssp TCCEE-ECCCCC---------------------CCBCCSEEEECGGGGEEEEEECGGGCEEEEE-TTEEEEECTTSSBEE
T ss_pred ceEee-eeccCc---------------------ccccccccccccccceeeecCCCCCEEEEEE-cCEEEEEcCCCCceE
Confidence 33211 111000 00011122366789999999 9999999888 789999999887755
Q ss_pred EEeecCCC-ceEEEEeCCCC-eEEEEcCCCeEE-EEEcCCCCCCcccccceeeccccccEEEEEEcCCCCEEEEecCCCc
Q 047325 190 ESVSAHDD-AVNSVVSSSEG-LIFTGSADGTVK-VWKREQHGKGTKHSLAQTLLKQECAVTALVVSSSRSIVYCGSSDGL 266 (368)
Q Consensus 190 ~~~~~~~~-~v~~~~~~~~~-~l~~~~~dg~i~-i~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~ 266 (368)
. +..|.. .+..++|+ ++ .++.++.++.+. +||+.... ...+..+...+..++|+|++++|++++.++.
T Consensus 331 ~-~~~~~~~~~~~~~~s-dg~~l~~~s~~~~l~~~~d~~~~~-------~~~l~~~~~~~~~~~~SpDG~~la~~~~~~~ 401 (1045)
T 1k32_A 331 K-VPEPLRIRYVRRGGD-TKVAFIHGTREGDFLGIYDYRTGK-------AEKFEENLGNVFAMGVDRNGKFAVVANDRFE 401 (1045)
T ss_dssp E-CSCCSCEEEEEECSS-SEEEEEEEETTEEEEEEEETTTCC-------EEECCCCCCSEEEEEECTTSSEEEEEETTSE
T ss_pred E-ccCCCcceEEeeeEc-CCCeEEEEECCCceEEEEECCCCC-------ceEecCCccceeeeEECCCCCEEEEECCCCe
Confidence 4 556666 89999999 88 788877788888 89987542 2233367778999999999999999999999
Q ss_pred EEEEeCCCccccceeeeccceE--EEEEEeCCCEEEEeeCCC----------eEEEEecCCCceeeeEeeeccccCeeEE
Q 047325 267 VNFWEREKQLSHGGVLKGHKLA--VLCLAAAGKLVFSGSADK----------TICVWRRDGAIHTCLSVLTGHTGPVKCL 334 (368)
Q Consensus 267 i~i~d~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~~~~dg----------~i~iw~~~~~~~~~~~~~~~h~~~v~~l 334 (368)
|++||+.+++.. .....|... ..+++|||++|++++.++ .|++||+.++ + ...+..|...+..+
T Consensus 402 v~~~d~~tg~~~-~~~~~~~~~v~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~~~g--~-~~~l~~~~~~~~~~ 477 (1045)
T 1k32_A 402 IMTVDLETGKPT-VIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGR--K-IFAATTENSHDYAP 477 (1045)
T ss_dssp EEEEETTTCCEE-EEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTT--E-EEECSCSSSBEEEE
T ss_pred EEEEECCCCceE-EeccCCCCCccceEECCCCCeEEEEecCccccccCCCCCeEEEEECCCC--c-EEEeeCCCcccCCc
Confidence 999999887554 334455544 367888999998887654 8999999876 3 55677788889999
Q ss_pred EEecCCeeeecC
Q 047325 335 AVEEDRDSSSST 346 (368)
Q Consensus 335 ~~~~~~~~~~~~ 346 (368)
+|+|||+.++..
T Consensus 478 ~~spdG~~l~~~ 489 (1045)
T 1k32_A 478 AFDADSKNLYYL 489 (1045)
T ss_dssp EECTTSCEEEEE
T ss_pred eEcCCCCEEEEE
Confidence 999999966544
No 136
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=99.91 E-value=6e-22 Score=175.80 Aligned_cols=282 Identities=9% Similarity=0.047 Sum_probs=191.2
Q ss_pred ccCCCceeeeccCcCCcEEEEEecCC--EEEEccCCCcEEEEcC--Ccc--eecccCCCCCeeEEEEe------CCEEEE
Q 047325 30 NLPQNGLIGSLVREEGHIYSLAASKD--LLYTGSDSKNIRVWKN--LKE--FCGFKASSGLVKAIVIS------GEKIFT 97 (368)
Q Consensus 30 ~~~~~~~~~~~~~h~~~i~~~~~~~~--~l~s~~~dg~i~iw~~--~~~--~~~~~~~~~~v~~~~~~------~~~l~s 97 (368)
+...++++.++..+.. +.+++|+++ +|++++.|++|++||+ .+. +..+. +...+..++|+ ++++++
T Consensus 165 D~~t~~~~~~i~~g~~-~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~~~~~~i~-~g~~p~~va~sp~~~~dg~~l~v 242 (543)
T 1nir_A 165 DGDSKKIVKVIDTGYA-VHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIK-IGIEARSVESSKFKGYEDRYTIA 242 (543)
T ss_dssp ETTTCCEEEEEECSTT-EEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEE-CCSEEEEEEECCSTTCTTTEEEE
T ss_pred ECCCceEEEEEecCcc-cceEEECCCCCEEEEECCCCeEEEEECcCCCCcEEEEEe-cCCCcceEEeCCCcCCCCCEEEE
Confidence 3455667777773333 888888755 9999999999999999 432 33344 34557888886 568888
Q ss_pred EeC-CCeEEEEeecCCCccccccCCccccceeeeeccCCCCceeEecccceeeeeecC-CCEeEEEEcCCCCE-EEEEeC
Q 047325 98 GHQ-DGKIRVWKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHS-DAVSCMSLDQDCGL-LYTASW 174 (368)
Q Consensus 98 ~~~-dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~-l~~~~~ 174 (368)
++. +++|.+||..+.+............ ... ..|. ..+..+.++|++.. +++...
T Consensus 243 ~~~~~~~v~v~D~~t~~~~~~i~~~g~~~--------------------~~~--~~~~~~~v~~i~~s~~~~~~~vs~~~ 300 (543)
T 1nir_A 243 GAYWPPQFAIMDGETLEPKQIVSTRGMTV--------------------DTQ--TYHPEPRVAAIIASHEHPEFIVNVKE 300 (543)
T ss_dssp EEEESSEEEEEETTTCCEEEEEECCEECS--------------------SSC--CEESCCCEEEEEECSSSSEEEEEETT
T ss_pred EEccCCeEEEEeccccccceeecccCccc--------------------Ccc--ccccCCceEEEEECCCCCEEEEEECC
Confidence 874 8999999988776543322110000 000 0033 37899999997664 556667
Q ss_pred CCcEEEEEccCCeEEE--EeecCCCceEEEEeCCCC-eEE-EEcCCCeEEEEEcCCCCCCcccccceeec----cccccE
Q 047325 175 DRTFKVWRISDSKCLE--SVSAHDDAVNSVVSSSEG-LIF-TGSADGTVKVWKREQHGKGTKHSLAQTLL----KQECAV 246 (368)
Q Consensus 175 d~~i~iwd~~~~~~~~--~~~~~~~~v~~~~~~~~~-~l~-~~~~dg~i~i~d~~~~~~~~~~~~~~~~~----~~~~~i 246 (368)
++.|.+||+.+.+.+. .+. +...+.++.|+|++ +++ ++..+++|.+||..++. +...+. .|.+..
T Consensus 301 ~g~i~vvd~~~~~~l~~~~i~-~~~~~~~~~~spdg~~l~va~~~~~~v~v~D~~tg~------l~~~i~~g~~ph~g~g 373 (543)
T 1nir_A 301 TGKVLLVNYKDIDNLTVTSIG-AAPFLHDGGWDSSHRYFMTAANNSNKVAVIDSKDRR------LSALVDVGKTPHPGRG 373 (543)
T ss_dssp TTEEEEEECTTSSSCEEEEEE-CCSSCCCEEECTTSCEEEEEEGGGTEEEEEETTTTE------EEEEEECSSSBCCTTC
T ss_pred CCeEEEEEecCCCcceeEEec-cCcCccCceECCCCCEEEEEecCCCeEEEEECCCCe------EEEeeccCCCCCCCCC
Confidence 8999999998765433 443 56678889999999 555 45568999999998752 233332 244333
Q ss_pred EEEEEcCC-CCEEEEec-CCCcEEEEeCCCc------cccceeeeccceE--EEEEEeCCCEEEEee-------CCCeEE
Q 047325 247 TALVVSSS-RSIVYCGS-SDGLVNFWEREKQ------LSHGGVLKGHKLA--VLCLAAAGKLVFSGS-------ADKTIC 309 (368)
Q Consensus 247 ~~~~~~~~-~~~l~~~~-~dg~i~i~d~~~~------~~~~~~~~~~~~~--~~~~~~~~~~l~~~~-------~dg~i~ 309 (368)
..+ ++|+ +..++++. .|++|.+||+.+. ......+..|... -+.++|++++|++++ .+++|.
T Consensus 374 ~~~-~~p~~g~~~~s~~~~d~~V~v~d~~~~~~~~~~~~~v~~l~~~g~~~~~v~~~pdg~~l~v~~~~~~~~~~~~~v~ 452 (543)
T 1nir_A 374 ANF-VHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVA 452 (543)
T ss_dssp EEE-EETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCCEEEECCTTCSSHHHHTCEE
T ss_pred ccc-CCCCCccEEEeccCCCceEEEEEeCCCCCchhcCeEEEEEEcCCCCceEEEcCCCCCcEEEecCCCCCcccCceEE
Confidence 333 4676 66666765 6899999999871 2333556666544 366789999999987 277999
Q ss_pred EEecCCCceeeeEee--------eccccCeeEEEEecCCeeee
Q 047325 310 VWRRDGAIHTCLSVL--------TGHTGPVKCLAVEEDRDSSS 344 (368)
Q Consensus 310 iw~~~~~~~~~~~~~--------~~h~~~v~~l~~~~~~~~~~ 344 (368)
+||+.+.+.. ...+ ..+...+..++|+|+|+.+.
T Consensus 453 v~d~~~~~~~-~~~~~v~~~~~~~~~~~~~~~~~~~~~g~~~~ 494 (543)
T 1nir_A 453 VFDLKNLDAK-YQVLPIAEWADLGEGAKRVVQPEYNKRGDEVW 494 (543)
T ss_dssp EEETTCTTSC-CEEECHHHHHCCCSSCCEEEEEEECSSSSEEE
T ss_pred EEECCCCCCC-eEEeechhhcccCCCCCceEeccCCCCCCEEE
Confidence 9999876422 1222 35677899999999999655
No 137
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=99.91 E-value=1e-21 Score=165.29 Aligned_cols=269 Identities=12% Similarity=0.210 Sum_probs=175.6
Q ss_pred cCcCCcEEEEEecCC--EEEEccCC-CcEEEEcCC--cc----eecccCCCCCeeEEEEe--CCEEEEEeC-CCeEEEEe
Q 047325 41 VREEGHIYSLAASKD--LLYTGSDS-KNIRVWKNL--KE----FCGFKASSGLVKAIVIS--GEKIFTGHQ-DGKIRVWK 108 (368)
Q Consensus 41 ~~h~~~i~~~~~~~~--~l~s~~~d-g~i~iw~~~--~~----~~~~~~~~~~v~~~~~~--~~~l~s~~~-dg~i~vw~ 108 (368)
..|...+.+++|+++ +|++++.+ +.|++|++. .. +..+..+. .+..++|+ +++|++++. ++.|.+||
T Consensus 34 ~~~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~s~dg~~l~~~~~~~~~i~~~d 112 (343)
T 1ri6_A 34 VDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPG-SLTHISTDHQGQFVFVGSYNAGNVSVTR 112 (343)
T ss_dssp EECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSS-CCSEEEECTTSSEEEEEETTTTEEEEEE
T ss_pred EecCCCCceEEECCCCCEEEEeecCCCeEEEEEecCCCCceeeccccccCC-CCcEEEEcCCCCEEEEEecCCCeEEEEE
Confidence 346778888998755 67777765 999999976 22 22333333 78889998 677766664 88999999
Q ss_pred ecCCCccccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcCCCCEEEEEe-CCCcEEEEEccC-C
Q 047325 109 ISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCGLLYTAS-WDRTFKVWRISD-S 186 (368)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d~~i~iwd~~~-~ 186 (368)
+..+...... .. ......+.+++|+|+++++++++ .++.|.+||+.+ +
T Consensus 113 ~~~~~~~~~~-----------------------------~~-~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~ 162 (343)
T 1ri6_A 113 LEDGLPVGVV-----------------------------DV-VEGLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDG 162 (343)
T ss_dssp EETTEEEEEE-----------------------------EE-ECCCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTS
T ss_pred CCCCcccccc-----------------------------cc-ccCCCCceEEEECCCCCEEEEecCCCCEEEEEEecCCC
Confidence 9622110000 00 01334578899999999888887 889999999987 6
Q ss_pred eEEE----Eeec-CCCceEEEEeCCCC-eEE-EEcCCCeEEEEEcCCCCCCcc-cccceeecc---ccccEEEEEEcCCC
Q 047325 187 KCLE----SVSA-HDDAVNSVVSSSEG-LIF-TGSADGTVKVWKREQHGKGTK-HSLAQTLLK---QECAVTALVVSSSR 255 (368)
Q Consensus 187 ~~~~----~~~~-~~~~v~~~~~~~~~-~l~-~~~~dg~i~i~d~~~~~~~~~-~~~~~~~~~---~~~~i~~~~~~~~~ 255 (368)
+... .+.. ....+.+++|+|++ .++ ++..++.|.+||++....... ......... ....+..++|+|++
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg 242 (343)
T 1ri6_A 163 HLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDG 242 (343)
T ss_dssp CEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTS
T ss_pred ceeeecccccccCCCCCcceEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEeeccccCccccccCCccceEECCCC
Confidence 5432 2232 34578899999999 454 555899999999964221000 111111111 13457789999999
Q ss_pred CEEE-EecCCCcEEEEeCCC--cc-ccceeeec-cceEEEEEEeCCCEEEEee-CCCeEEEEecC--CCceeeeEeeecc
Q 047325 256 SIVY-CGSSDGLVNFWEREK--QL-SHGGVLKG-HKLAVLCLAAAGKLVFSGS-ADKTICVWRRD--GAIHTCLSVLTGH 327 (368)
Q Consensus 256 ~~l~-~~~~dg~i~i~d~~~--~~-~~~~~~~~-~~~~~~~~~~~~~~l~~~~-~dg~i~iw~~~--~~~~~~~~~~~~h 327 (368)
++|+ ++..++.|.+||++. +. ........ .....+++++++++|++++ .++.|.+|+++ ++..+.+..+..
T Consensus 243 ~~l~v~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~v~~~d~~~g~~~~~~~~~~- 321 (343)
T 1ri6_A 243 RHLYACDRTASLITVFSVSEDGSVLSKEGFQPTETQPRGFNVDHSGKYLIAAGQKSHHISVYEIVGEQGLLHEKGRYAV- 321 (343)
T ss_dssp SEEEEEETTTTEEEEEEECTTSCCEEEEEEEECSSSCCCEEECTTSSEEEEECTTTCEEEEEEEETTTTEEEEEEEEEC-
T ss_pred CEEEEEecCCCEEEEEEEcCCCCceEEeeeecCCCccceEEECCCCCEEEEecCCCCeEEEEEEcCCCceeeEcccccc-
Confidence 8877 455789999999982 21 11122222 2233467888999888777 68999999665 444455555544
Q ss_pred ccCeeEEEEecCCe
Q 047325 328 TGPVKCLAVEEDRD 341 (368)
Q Consensus 328 ~~~v~~l~~~~~~~ 341 (368)
.....+++|.|+..
T Consensus 322 g~~p~~i~~~~~~~ 335 (343)
T 1ri6_A 322 GQGPMWVVVNAHEG 335 (343)
T ss_dssp SSSCCEEEEEEEC-
T ss_pred CCCCeeEEEEcccC
Confidence 34577888887654
No 138
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=99.91 E-value=9.3e-23 Score=188.78 Aligned_cols=281 Identities=11% Similarity=0.041 Sum_probs=184.2
Q ss_pred cEEEEEecCC--EEEEccCCCcEEEEcCCcc--eecccCCCC---CeeEEEEe--CCEEEEEeCC---------CeEEEE
Q 047325 46 HIYSLAASKD--LLYTGSDSKNIRVWKNLKE--FCGFKASSG---LVKAIVIS--GEKIFTGHQD---------GKIRVW 107 (368)
Q Consensus 46 ~i~~~~~~~~--~l~s~~~dg~i~iw~~~~~--~~~~~~~~~---~v~~~~~~--~~~l~s~~~d---------g~i~vw 107 (368)
.+.+++|+++ ++++ +.||+|++||+.+. ...+..|.. .|.+++|+ |++|++++.+ +.+.+|
T Consensus 18 ~~~~~~~spdg~~~~~-~~dg~i~~~d~~~g~~~~~~~~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~~ 96 (723)
T 1xfd_A 18 HDPEAKWISDTEFIYR-EQKGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLS 96 (723)
T ss_dssp CCCCCCBSSSSCBCCC-CSSSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEE
T ss_pred cccccEEcCCCcEEEE-eCCCCEEEEECCCCcEEEEeccccccccccceEEECCCCCEEEEEecCccceeecceeeEEEE
Confidence 3566777755 6655 78999999998743 334455544 48999998 8899998874 788899
Q ss_pred eecCCCccccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcCCCCEEEEEeCCCcEEEEEccCCe
Q 047325 108 KISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCGLLYTASWDRTFKVWRISDSK 187 (368)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~ 187 (368)
|+.+++....... .+|...+..++|+|||+.|+.++. +.|++||+.+++
T Consensus 97 d~~~~~~~~l~~~------------------------------~~~~~~~~~~~~SPdG~~la~~~~-~~i~~~~~~~g~ 145 (723)
T 1xfd_A 97 KIPHGDPQSLDPP------------------------------EVSNAKLQYAGWGPKGQQLIFIFE-NNIYYCAHVGKQ 145 (723)
T ss_dssp ESSSCCCEECCCT------------------------------TCCSCCCSBCCBCSSTTCEEEEET-TEEEEESSSSSC
T ss_pred ECCCCceEeccCC------------------------------ccccccccccEECCCCCEEEEEEC-CeEEEEECCCCc
Confidence 9988764211111 015556888999999999999886 799999999888
Q ss_pred EEEEeecCCCce------------------EEEEeCCCC-eEEEEcCCC-------------------------------
Q 047325 188 CLESVSAHDDAV------------------NSVVSSSEG-LIFTGSADG------------------------------- 217 (368)
Q Consensus 188 ~~~~~~~~~~~v------------------~~~~~~~~~-~l~~~~~dg------------------------------- 217 (368)
.......+...+ .+++|+||| .|++++.|+
T Consensus 146 ~~~~~~~~~~~~~~~g~~~~v~~ee~~~~~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~ 225 (723)
T 1xfd_A 146 AIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSEN 225 (723)
T ss_dssp CEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCC
T ss_pred eEEEecCCCCCceECcccceeEEEEeccCcceEEECCCCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCC
Confidence 766655443333 789999999 777776543
Q ss_pred ---eEEEEEcCCCCCCcccccceeeccccccEEEEEEcCCCCEEEEecC----CCcEEEEeCCCccccceeeeccce---
Q 047325 218 ---TVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSSSRSIVYCGSS----DGLVNFWEREKQLSHGGVLKGHKL--- 287 (368)
Q Consensus 218 ---~i~i~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~----dg~i~i~d~~~~~~~~~~~~~~~~--- 287 (368)
.|++||+.................+...+..++|+|||++|++... +..|++||+.+++........+..
T Consensus 226 ~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~ 305 (723)
T 1xfd_A 226 PSISLHVIGLNGPTHDLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKHEDESEAWLH 305 (723)
T ss_dssp CEEEEEEEESSSSCCCEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEEEEEECSSCCC
T ss_pred CeeEEEEEECCCCceeEEeeCCccCCCccceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCCCcceEEEEeccCCEEe
Confidence 7999998765321100000111123677999999999998877643 357999999877644222222222
Q ss_pred ---EEEEEEeCCCEEEE--eeCCC------eEEEEe-cCCCceeeeEeeeccccCeeE-EEEecCCeeeecCC-----cc
Q 047325 288 ---AVLCLAAAGKLVFS--GSADK------TICVWR-RDGAIHTCLSVLTGHTGPVKC-LAVEEDRDSSSSTS-----SC 349 (368)
Q Consensus 288 ---~~~~~~~~~~~l~~--~~~dg------~i~iw~-~~~~~~~~~~~~~~h~~~v~~-l~~~~~~~~~~~~~-----~~ 349 (368)
....++|||+.|+. +..++ .|.+|| .......+...+..+...+.. ++|+|||+.++... +.
T Consensus 306 ~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~ 385 (723)
T 1xfd_A 306 RQNEEPVFSKDGRKFFFIRAIPQGGRGKFYHITVSSSQPNSSNDNIQSITSGDWDVTKILAYDEKGNKIYFLSTEDLPRR 385 (723)
T ss_dssp CCCCCCEECTTSCSEEEEEEECCSSSSCEEEEEEECSSCCSSSCCCCBSCCSSSCEEEEEEEETTTTEEEEEESSSCTTC
T ss_pred ccCCCceEcCCCCeEEEEEecccCCCcceeEEEEEeccCCCCccceeEeecCCeEEEeeeEEcCCCCEEEEEEcCCCCcc
Confidence 14578899997765 45677 456666 233310013344433444554 69999999775432 44
Q ss_pred eEEEEEeeC
Q 047325 350 AQRWIVYSG 358 (368)
Q Consensus 350 ~~~w~l~sg 358 (368)
.++|.+-..
T Consensus 386 ~~l~~~~~~ 394 (723)
T 1xfd_A 386 RQLYSANTV 394 (723)
T ss_dssp CEEEEECSS
T ss_pred eEEEEEeCC
Confidence 677777543
No 139
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=99.90 E-value=3.2e-22 Score=167.88 Aligned_cols=259 Identities=8% Similarity=0.004 Sum_probs=173.2
Q ss_pred CEEEEccCCCcEEEEcCCcc--eecccCCC-C-CeeEEEEe--CCEE-EEEeCCCeEEEEeecCCCccccccCCccccce
Q 047325 55 DLLYTGSDSKNIRVWKNLKE--FCGFKASS-G-LVKAIVIS--GEKI-FTGHQDGKIRVWKISPKNQSVHKRAGTLPTLK 127 (368)
Q Consensus 55 ~~l~s~~~dg~i~iw~~~~~--~~~~~~~~-~-~v~~~~~~--~~~l-~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~ 127 (368)
++|++++.++.|++||..+. ...+.... . .+..++|+ ++++ +++..++.|.+||+.+++...........
T Consensus 2 ~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~--- 78 (337)
T 1pby_B 2 DYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPE--- 78 (337)
T ss_dssp EEEEEEETTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTT---
T ss_pred cEEEEcCCCCeEEEEECCCCcEEEEEEcCCCCCCccceEEcCCCCEEEEEeCCCCeEEEEECCCCCeEeeEEcCCcc---
Confidence 47899999999999998753 22333222 1 47788887 5555 55566899999999887643322211000
Q ss_pred eeeeccCCCCceeEecccceeeeeecCCCEeEEEEcCCCCEEEEEe------------CCCcEEEEEccCCeEEEEeecC
Q 047325 128 DIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCGLLYTAS------------WDRTFKVWRISDSKCLESVSAH 195 (368)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~------------~d~~i~iwd~~~~~~~~~~~~~ 195 (368)
.+...+.+++|+|+++++++++ .++.|.+||+.+++.+..+..
T Consensus 79 ------------------------~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~- 133 (337)
T 1pby_B 79 ------------------------ERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEA- 133 (337)
T ss_dssp ------------------------EEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEEC-
T ss_pred ------------------------cccccccceEECCCCCEEEEEecccccccccccccCceEEEEECCCCcEEEEEeC-
Confidence 0122566899999999998886 579999999999988887765
Q ss_pred CCceEEEEeCCCC-eEEEEcCCCeEEEEEcCCCCCCcccccceeeccccccEEEEEEcCCCCEEEEecCCC---------
Q 047325 196 DDAVNSVVSSSEG-LIFTGSADGTVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSSSRSIVYCGSSDG--------- 265 (368)
Q Consensus 196 ~~~v~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg--------- 265 (368)
...+.+++|+|++ +++++ ++.|.+||+.... ....+..+.. ...+.|+|+++.++..+..+
T Consensus 134 ~~~~~~~~~s~dg~~l~~~--~~~i~~~d~~~~~------~~~~~~~~~~-~~~~~~s~dg~~l~~~~~~~~~~~~~~~~ 204 (337)
T 1pby_B 134 PRQITMLAWARDGSKLYGL--GRDLHVMDPEAGT------LVEDKPIQSW-EAETYAQPDVLAVWNQHESSGVMATPFYT 204 (337)
T ss_dssp CSSCCCEEECTTSSCEEEE--SSSEEEEETTTTE------EEEEECSTTT-TTTTBCCCBCCCCCCCCTTTTEEEEEEEE
T ss_pred CCCcceeEECCCCCEEEEe--CCeEEEEECCCCc------Eeeeeecccc-CCCceeCCCccEEeeeccCCCceeeeeec
Confidence 4567889999999 67776 6899999997652 2222222210 01236788888766554332
Q ss_pred ---------------cEEEEeCCCccccceeeeccceE--EEEEEeCCCEEEEeeCCCeEEEEecCCCceeeeEeeeccc
Q 047325 266 ---------------LVNFWEREKQLSHGGVLKGHKLA--VLCLAAAGKLVFSGSADKTICVWRRDGAIHTCLSVLTGHT 328 (368)
Q Consensus 266 ---------------~i~i~d~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~ 328 (368)
.|.+||+++++........+... -++++|++++++++ ++.|++||+.+. +.+..+.. .
T Consensus 205 ~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~--~~~v~~~d~~~~--~~~~~~~~-~ 279 (337)
T 1pby_B 205 ARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAKTRAFGA--YNVLESFDLEKN--ASIKRVPL-P 279 (337)
T ss_dssp EBTTSCTTSGGGEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECTTSSEEEEE--ESEEEEEETTTT--EEEEEEEC-S
T ss_pred cccccccccccccccceEEEeCCCCCceEeecCCCCCceeeEEECCCCCEEEEe--CCeEEEEECCCC--cCcceecC-C
Confidence 46899998765542233333323 36778899999988 799999999876 44555543 3
Q ss_pred cCeeEEEEecCCeeeecCC--cceEEEEE
Q 047325 329 GPVKCLAVEEDRDSSSSTS--SCAQRWIV 355 (368)
Q Consensus 329 ~~v~~l~~~~~~~~~~~~~--~~~~~w~l 355 (368)
..+.+++|+|+++.++++. +.+.+|.+
T Consensus 280 ~~~~~~~~s~dg~~l~~~~~~~~i~v~d~ 308 (337)
T 1pby_B 280 HSYYSVNVSTDGSTVWLGGALGDLAAYDA 308 (337)
T ss_dssp SCCCEEEECTTSCEEEEESBSSEEEEEET
T ss_pred CceeeEEECCCCCEEEEEcCCCcEEEEEC
Confidence 5678999999998554433 33444443
No 140
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=99.90 E-value=3.8e-23 Score=190.82 Aligned_cols=282 Identities=10% Similarity=0.043 Sum_probs=183.5
Q ss_pred cCCCceeeeccCcCCcEEEEEecCCEEEEccCCCcEEEEcCCccee---cccCCC-----------------CCeeEEEE
Q 047325 31 LPQNGLIGSLVREEGHIYSLAASKDLLYTGSDSKNIRVWKNLKEFC---GFKASS-----------------GLVKAIVI 90 (368)
Q Consensus 31 ~~~~~~~~~~~~h~~~i~~~~~~~~~l~s~~~dg~i~iw~~~~~~~---~~~~~~-----------------~~v~~~~~ 90 (368)
+|.+.....+..+. +..+.|.++.+++++.|+ | +||+.+... .+..|. ..|.+++|
T Consensus 14 ~~~~~~~~~~~~~~--~~~~~w~g~~~~~~~~~~-i-~~d~~tg~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~v~~~~~ 89 (706)
T 2z3z_A 14 MPGGKEFYNFYPEY--VVGLQWMGDNYVFIEGDD-L-VFNKANGKSAQTTRFSAADLNALMPEGCKFQTTDAFPSFRTLD 89 (706)
T ss_dssp ----------------CTTCEEETTEEEEEETTE-E-EEEC-------CEEEEHHHHHTTC-----------CCCEEEEE
T ss_pred cCCccccccccccc--CCCCcCcCCeEEEEeCCc-E-EEECCCCcEeeEEeechhHhhhhccchhccccccccCceeEEE
Confidence 44444455555443 333444477777777788 8 999864322 222222 56999999
Q ss_pred e-CCEEEEEeCCCeEEEEeecCCCccccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcCCCCEE
Q 047325 91 S-GEKIFTGHQDGKIRVWKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCGLL 169 (368)
Q Consensus 91 ~-~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l 169 (368)
+ .+.++.+ .++.|++||+.+++... +..+...+.+++|+|||+.|
T Consensus 90 spd~~~~~~-~~~~i~~~d~~~~~~~~---------------------------------l~~~~~~~~~~~~SpdG~~l 135 (706)
T 2z3z_A 90 AGRGLVVLF-TQGGLVGFDMLARKVTY---------------------------------LFDTNEETASLDFSPVGDRV 135 (706)
T ss_dssp TTTTEEEEE-ETTEEEEEETTTTEEEE---------------------------------EECCTTCCTTCEECTTSSEE
T ss_pred CCCCeEEEE-ECCEEEEEECCCCceEE---------------------------------ccCCcccccCCcCCCCCCEE
Confidence 8 4455554 46999999998764321 11255668889999999999
Q ss_pred EEEeCCCcEEEEEccC-----CeEEEEeecCCCc--------------eEEEEeCCCC-eEEEEc---------------
Q 047325 170 YTASWDRTFKVWRISD-----SKCLESVSAHDDA--------------VNSVVSSSEG-LIFTGS--------------- 214 (368)
Q Consensus 170 ~~~~~d~~i~iwd~~~-----~~~~~~~~~~~~~--------------v~~~~~~~~~-~l~~~~--------------- 214 (368)
+.+ .++.|++||+.+ ++.......+... +.++.|+||| .|++++
T Consensus 136 a~~-~~~~i~v~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~ 214 (706)
T 2z3z_A 136 AYV-RNHNLYIARGGKLGEGMSRAIAVTIDGTETLVYGQAVHQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYH 214 (706)
T ss_dssp EEE-ETTEEEEEECBCTTSCCCCCEESCSCCBTTEEESSCCGGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECC
T ss_pred EEE-ECCeEEEEecCcccccCCCcEEeccCCCCCeEcccchhhhhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccC
Confidence 985 679999999998 7766544433332 4789999999 777776
Q ss_pred ------------------CCCeEEEEEcCCCCCCcccccceeeccccccEEEEEEcCCCCEEEEecCCC-----cEEEEe
Q 047325 215 ------------------ADGTVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSSSRSIVYCGSSDG-----LVNFWE 271 (368)
Q Consensus 215 ------------------~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg-----~i~i~d 271 (368)
.+..|++||+..+.. ........+...+..++|+||++.|++++.++ .|++||
T Consensus 215 ~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~----~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d 290 (706)
T 2z3z_A 215 PLEAESKPLYYPMAGTPSHHVTVGIYHLATGKT----VYLQTGEPKEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYD 290 (706)
T ss_dssp SSSCEEEEECCCBTTSCCCEEEEEEEETTTTEE----EECCCCSCTTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEE
T ss_pred CCCCceEEeeCCCCCCCCCeeEEEEEECCCCce----EeeccCCCCceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEE
Confidence 446899999976421 11111124667799999999999999887765 899999
Q ss_pred CCCccccceeee-ccce-----EEEEEEe--CCCEEEEeeCCCeEEEEecCCCceeeeEeeeccccCeeE-EEEecCCee
Q 047325 272 REKQLSHGGVLK-GHKL-----AVLCLAA--AGKLVFSGSADKTICVWRRDGAIHTCLSVLTGHTGPVKC-LAVEEDRDS 342 (368)
Q Consensus 272 ~~~~~~~~~~~~-~~~~-----~~~~~~~--~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~-l~~~~~~~~ 342 (368)
+.++........ .+.. ....++| +++++++++.||.+++|+++.. ...+..+..|...+.+ ++|+|+++.
T Consensus 291 ~~~g~~~~~~~~~~~~~~~~~~~~~~~sp~~dg~~l~~~~~~g~~~l~~~~~~-~~~~~~l~~~~~~v~~~~~~spdg~~ 369 (706)
T 2z3z_A 291 AETGRFVRTLFVETDKHYVEPLHPLTFLPGSNNQFIWQSRRDGWNHLYLYDTT-GRLIRQVTKGEWEVTNFAGFDPKGTR 369 (706)
T ss_dssp TTTCCEEEEEEEEECSSCCCCCSCCEECTTCSSEEEEEECTTSSCEEEEEETT-SCEEEECCCSSSCEEEEEEECTTSSE
T ss_pred CCCCceeeEEEEccCCCeECccCCceeecCCCCEEEEEEccCCccEEEEEECC-CCEEEecCCCCeEEEeeeEEcCCCCE
Confidence 988733222222 2221 2257889 9999999999999999988732 2455667778778887 799999986
Q ss_pred eecC-Cc----ceEEEEEe
Q 047325 343 SSST-SS----CAQRWIVY 356 (368)
Q Consensus 343 ~~~~-~~----~~~~w~l~ 356 (368)
++.+ .. ...+|.+-
T Consensus 370 l~~~~~~~~~~~~~l~~~d 388 (706)
T 2z3z_A 370 LYFESTEASPLERHFYCID 388 (706)
T ss_dssp EEEEESSSCTTCBEEEEEE
T ss_pred EEEEecCCCCceEEEEEEE
Confidence 6433 22 23666553
No 141
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=99.90 E-value=4.3e-22 Score=172.08 Aligned_cols=222 Identities=14% Similarity=0.152 Sum_probs=151.7
Q ss_pred CcEEEEcCCcceecccCCCCCeeEEEEe--CCEEEEEeCCCeEEEEeecCCCccccccCCccccceeeeeccCCCCceeE
Q 047325 64 KNIRVWKNLKEFCGFKASSGLVKAIVIS--GEKIFTGHQDGKIRVWKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIE 141 (368)
Q Consensus 64 g~i~iw~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 141 (368)
+.+++|+.... .+...++.++++ +.++++++.|+ +++|+........... .... .
T Consensus 23 ~~vri~~~~~~-----~~~~~~n~lavs~~~~~l~~~~~dg-v~v~~~~~~~~~~~~~-~~~~-------------~--- 79 (434)
T 2oit_A 23 KKVRIFDSPEE-----LPKERSSLLAVSNKYGLVFAGGASG-LQIFPTKNLLIQNKPG-DDPN-------------K--- 79 (434)
T ss_dssp CEEECSCCCSS-----CCCSCCBCEEEETTTTEEEEEETTE-EEEEEHHHHCCCCCTT-CCTT-------------C---
T ss_pred eeEEecCCccc-----cCCCCccEEEEecCCCEEEEECCCE-EEEEEchHhhhhcccc-cCcc-------------c---
Confidence 46888875422 123456777777 77899999887 8898765321110000 0000 0
Q ss_pred ecccceeeeeecCCCEeEEEEcCCCCEEE----EEeCCCcEEEEEccCC--------e---EEEEeecCCCceEEEEeCC
Q 047325 142 VRRHRTALWIRHSDAVSCMSLDQDCGLLY----TASWDRTFKVWRISDS--------K---CLESVSAHDDAVNSVVSSS 206 (368)
Q Consensus 142 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~----~~~~d~~i~iwd~~~~--------~---~~~~~~~~~~~v~~~~~~~ 206 (368)
...........+...|.+++|+|++++|+ +++.|+.|++||+.++ + .+..+.+|...|.+++|+|
T Consensus 80 ~~~~~~~~~~~~~~~v~~l~~spdg~~lav~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p 159 (434)
T 2oit_A 80 IVDKVQGLLVPMKFPIHHLALSCDNLTLSACMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNP 159 (434)
T ss_dssp EEECCCCEEECCSSCEEEEEECTTSCEEEEEEEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECS
T ss_pred ccccCccccccCCCcccEEEEcCCCCEEEEEEeccCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECC
Confidence 00000011123677899999999999999 7888999999998765 2 2455667899999999999
Q ss_pred C-C-eEEEEcCCCeEEEEEcCCCCCCcccccceeeccccccEEEEEEcCCCCEEEEecCCCcEEEEeCCCccccceeee-
Q 047325 207 E-G-LIFTGSADGTVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSSSRSIVYCGSSDGLVNFWEREKQLSHGGVLK- 283 (368)
Q Consensus 207 ~-~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~- 283 (368)
+ + +|++++.||.|++||++.. ........|...|.+++|+|++++|++|+.||.|++||.+. ... ....
T Consensus 160 ~~~~~las~s~Dg~v~iwD~~~~------~~~~~~~~~~~~v~~v~wspdg~~lasgs~dg~v~iwd~~~-~~~-~~~~~ 231 (434)
T 2oit_A 160 TVPSMVAVCLADGSIAVLQVTET------VKVCATLPSTVAVTSVCWSPKGKQLAVGKQNGTVVQYLPTL-QEK-KVIPC 231 (434)
T ss_dssp SCTTEEEEEETTSCEEEEEESSS------EEEEEEECGGGCEEEEEECTTSSCEEEEETTSCEEEECTTC-CEE-EEECC
T ss_pred CCCCEEEEEECCCeEEEEEcCCC------cceeeccCCCCceeEEEEcCCCCEEEEEcCCCcEEEEccCC-ccc-ccccC
Confidence 8 5 8999999999999999865 12334456788999999999999999999999999999982 221 1111
Q ss_pred ------ccceEEEEEEe--CCCEEEE-eeCCC------eEEEEecCCC
Q 047325 284 ------GHKLAVLCLAA--AGKLVFS-GSADK------TICVWRRDGA 316 (368)
Q Consensus 284 ------~~~~~~~~~~~--~~~~l~~-~~~dg------~i~iw~~~~~ 316 (368)
.|...+.++++ ++.++++ +..|| .+++|++...
T Consensus 232 ~~~~~~~~~~~v~~v~w~~~~~~l~~~~~~dg~~~~~~~v~i~~l~~~ 279 (434)
T 2oit_A 232 PPFYESDHPVRVLDVLWIGTYVFAIVYAAADGTLETSPDVVMALLPKK 279 (434)
T ss_dssp CTTCCTTSCEEEEEEEEEETTEEEEEEEETTCCSSSCCEEEEEECCCT
T ss_pred CcccCCCCceeEEEEEEecCceEEEEEccCCCccCCCCceEEEEeccC
Confidence 23446666665 4555543 33443 3899998754
No 142
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=99.90 E-value=2.8e-21 Score=162.93 Aligned_cols=261 Identities=15% Similarity=0.197 Sum_probs=170.4
Q ss_pred cCCCcEEEEcCCc--c-ee--cccCCCCCeeEEEEe--CCEEEEEeC---CCeEEEEeecCCCccccccCCccccceeee
Q 047325 61 SDSKNIRVWKNLK--E-FC--GFKASSGLVKAIVIS--GEKIFTGHQ---DGKIRVWKISPKNQSVHKRAGTLPTLKDIF 130 (368)
Q Consensus 61 ~~dg~i~iw~~~~--~-~~--~~~~~~~~v~~~~~~--~~~l~s~~~---dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~ 130 (368)
+.++.|.+|++.. . +. ....+......++|+ ++ |++++. ++.|.+|++.++.....
T Consensus 13 ~~~~~i~v~~~d~~tg~~~~~~~~~~~~~p~~~a~spdg~-l~~~~~~~~~~~v~~~~~~~g~~~~~------------- 78 (347)
T 3hfq_A 13 KTSQGIYQGTLDTTAKTLTNDGLLAATQNPTYLALSAKDC-LYSVDKEDDEGGIAAWQIDGQTAHKL------------- 78 (347)
T ss_dssp SSCCEEEEEEEETTTTEEEEEEEEEECSCCCCEEECTTCE-EEEEEEETTEEEEEEEEEETTEEEEE-------------
T ss_pred CCCCCEEEEEEcCCCCeEEEeeeeeccCCcceEEEccCCe-EEEEEecCCCceEEEEEecCCcEEEe-------------
Confidence 3456788876542 2 11 223455667788888 45 666654 68999999976542111
Q ss_pred eccCCCCceeEecccceeeeeecCCCEeEEEEcCCCCEEEEEe-CCCcEEEEEcc-CC--eEEEEeecC---------CC
Q 047325 131 KSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCGLLYTAS-WDRTFKVWRIS-DS--KCLESVSAH---------DD 197 (368)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d~~i~iwd~~-~~--~~~~~~~~~---------~~ 197 (368)
..+..+...+..++|+|++++|++++ .++.|.+||+. ++ +.+..+... ..
T Consensus 79 -----------------~~~~~~~~~p~~~a~spdg~~l~~~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~ 141 (347)
T 3hfq_A 79 -----------------NTVVAPGTPPAYVAVDEARQLVYSANYHKGTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGS 141 (347)
T ss_dssp -----------------EEEEEESCCCSEEEEETTTTEEEEEETTTTEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSC
T ss_pred -----------------eeeecCCCCCEEEEECCCCCEEEEEeCCCCEEEEEEeCCCCCeeecceeecCCCCCCccccCC
Confidence 11123667788999999999888888 67899999996 23 333333221 12
Q ss_pred ceEEEEeCCCC-eEEEEcCCCeEEEEEcCCCCCCcccccceee-ccccccEEEEEEcCCCCEEEE-ecCCCcEEEEeCCC
Q 047325 198 AVNSVVSSSEG-LIFTGSADGTVKVWKREQHGKGTKHSLAQTL-LKQECAVTALVVSSSRSIVYC-GSSDGLVNFWEREK 274 (368)
Q Consensus 198 ~v~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~l~~-~~~dg~i~i~d~~~ 274 (368)
.+.+++|+|++ .+++...++.|.+|++...+. ....... ......+..++|+|+++++++ +..++.|.+|++..
T Consensus 142 ~~~~~~~spdg~l~v~~~~~~~v~~~~~~~~g~---~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~ 218 (347)
T 3hfq_A 142 HIHYTDLTPDNRLAVIDLGSDKVYVYNVSDAGQ---LSEQSVLTMEAGFGPRHLVFSPDGQYAFLAGELSSQIASLKYDT 218 (347)
T ss_dssp CEEEEEECTTSCEEEEETTTTEEEEEEECTTSC---EEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEET
T ss_pred CceEEEECCCCcEEEEeCCCCEEEEEEECCCCc---EEEeeeEEcCCCCCCceEEECCCCCEEEEEeCCCCEEEEEEecC
Confidence 47889999999 666667789999999983321 1111111 122335788999999996655 56788999999874
Q ss_pred --cccc-ceeeec--------cceEEEEEEeCCCEE-EEeeCCCeEEEEecCC-CceeeeEeeeccccCeeEEEEecCCe
Q 047325 275 --QLSH-GGVLKG--------HKLAVLCLAAAGKLV-FSGSADKTICVWRRDG-AIHTCLSVLTGHTGPVKCLAVEEDRD 341 (368)
Q Consensus 275 --~~~~-~~~~~~--------~~~~~~~~~~~~~~l-~~~~~dg~i~iw~~~~-~~~~~~~~~~~h~~~v~~l~~~~~~~ 341 (368)
+... ...... ....-++++|+|++| ++...++.|.+|+++. +....+..+..+...+..++|+|+|+
T Consensus 219 ~~g~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~spdg~ 298 (347)
T 3hfq_A 219 QTGAFTQLGIVKTIPADYTAHNGAAAIRLSHDGHFLYVSNRGYNTLAVFAVTADGHLTLIQQISTEGDFPRDFDLDPTEA 298 (347)
T ss_dssp TTTEEEEEEEEESSCTTCCSCCEEEEEEECTTSCEEEEEEETTTEEEEEEECGGGCEEEEEEEECSSSCCCEEEECTTSS
T ss_pred CCCceEEeeeeeecCCCCCCCCcceeEEECCCCCEEEEEeCCCCEEEEEEECCCCcEEEeEEEecCCCCcCeEEECCCCC
Confidence 2211 111111 113337788999977 4556689999999863 23456666777777789999999999
Q ss_pred eeecCC---cceEEEEE
Q 047325 342 SSSSTS---SCAQRWIV 355 (368)
Q Consensus 342 ~~~~~~---~~~~~w~l 355 (368)
++++++ +.+.+|.+
T Consensus 299 ~l~v~~~~~~~v~v~~~ 315 (347)
T 3hfq_A 299 FVVVVNQNTDNATLYAR 315 (347)
T ss_dssp EEEEEETTTTEEEEEEE
T ss_pred EEEEEEcCCCcEEEEEE
Confidence 765543 33455544
No 143
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=99.90 E-value=5e-22 Score=183.35 Aligned_cols=273 Identities=8% Similarity=0.060 Sum_probs=181.9
Q ss_pred CcEEEEEecCC-EEEEccCCCcEEEEcCCcc-eecccCCCCCeeEEEEe--CCEEEEEeCCCeEEEEeecC-----CCcc
Q 047325 45 GHIYSLAASKD-LLYTGSDSKNIRVWKNLKE-FCGFKASSGLVKAIVIS--GEKIFTGHQDGKIRVWKISP-----KNQS 115 (368)
Q Consensus 45 ~~i~~~~~~~~-~l~s~~~dg~i~iw~~~~~-~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~vw~~~~-----~~~~ 115 (368)
..|.+++|+++ .++.+ .|+.|++||+.+. ...+..+...+.+++|+ |++|+++ .|+.|++||+.+ ++..
T Consensus 82 ~~v~~~~~spd~~~~~~-~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~SpdG~~la~~-~~~~i~v~~~~~~~~~~g~~~ 159 (706)
T 2z3z_A 82 FPSFRTLDAGRGLVVLF-TQGGLVGFDMLARKVTYLFDTNEETASLDFSPVGDRVAYV-RNHNLYIARGGKLGEGMSRAI 159 (706)
T ss_dssp CCCEEEEETTTTEEEEE-ETTEEEEEETTTTEEEEEECCTTCCTTCEECTTSSEEEEE-ETTEEEEEECBCTTSCCCCCE
T ss_pred cCceeEEECCCCeEEEE-ECCEEEEEECCCCceEEccCCcccccCCcCCCCCCEEEEE-ECCeEEEEecCcccccCCCcE
Confidence 56999999887 44444 4599999998754 34455667778888898 7788885 689999999987 5543
Q ss_pred ccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcCCCCEEEEEe----------------------
Q 047325 116 VHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCGLLYTAS---------------------- 173 (368)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~---------------------- 173 (368)
......... .... .. ....+...+.++.|+||+++|++++
T Consensus 160 ~~~~~~~~~----~~~g------------~~--~~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~ 221 (706)
T 2z3z_A 160 AVTIDGTET----LVYG------------QA--VHQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESK 221 (706)
T ss_dssp ESCSCCBTT----EEES------------SC--CGGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEE
T ss_pred EeccCCCCC----eEcc------------cc--hhhhhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceE
Confidence 222111000 0000 00 0111234468899999999999987
Q ss_pred -----------CCCcEEEEEccCCeEEEEee--cCCCceEEEEeCCCC-eEEEEcCCC-----eEEEEEcCCCCCCcccc
Q 047325 174 -----------WDRTFKVWRISDSKCLESVS--AHDDAVNSVVSSSEG-LIFTGSADG-----TVKVWKREQHGKGTKHS 234 (368)
Q Consensus 174 -----------~d~~i~iwd~~~~~~~~~~~--~~~~~v~~~~~~~~~-~l~~~~~dg-----~i~i~d~~~~~~~~~~~ 234 (368)
.+..|.+||+.+++...... .+...+.+++|+|++ .|++++.++ .|++||+.++.. ..
T Consensus 222 ~~~y~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~---~~ 298 (706)
T 2z3z_A 222 PLYYPMAGTPSHHVTVGIYHLATGKTVYLQTGEPKEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGRF---VR 298 (706)
T ss_dssp EECCCBTTSCCCEEEEEEEETTTTEEEECCCCSCTTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCCE---EE
T ss_pred EeeCCCCCCCCCeeEEEEEECCCCceEeeccCCCCceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCce---ee
Confidence 44689999999988655442 466789999999999 788777665 899999976521 01
Q ss_pred cceeecccc---ccEEEEEEcC--CCCEEEEecCCCcEEEEeCC-CccccceeeeccceEE---EEEEeCCCEEEEeeC-
Q 047325 235 LAQTLLKQE---CAVTALVVSS--SRSIVYCGSSDGLVNFWERE-KQLSHGGVLKGHKLAV---LCLAAAGKLVFSGSA- 304 (368)
Q Consensus 235 ~~~~~~~~~---~~i~~~~~~~--~~~~l~~~~~dg~i~i~d~~-~~~~~~~~~~~~~~~~---~~~~~~~~~l~~~~~- 304 (368)
.... ..+. ..+..++|+| ++++++++..||.+++|+++ ++... ..+..+...+ ..++++++.|+.++.
T Consensus 299 ~~~~-~~~~~~~~~~~~~~~sp~~dg~~l~~~~~~g~~~l~~~~~~~~~~-~~l~~~~~~v~~~~~~spdg~~l~~~~~~ 376 (706)
T 2z3z_A 299 TLFV-ETDKHYVEPLHPLTFLPGSNNQFIWQSRRDGWNHLYLYDTTGRLI-RQVTKGEWEVTNFAGFDPKGTRLYFESTE 376 (706)
T ss_dssp EEEE-EECSSCCCCCSCCEECTTCSSEEEEEECTTSSCEEEEEETTSCEE-EECCCSSSCEEEEEEECTTSSEEEEEESS
T ss_pred EEEE-ccCCCeECccCCceeecCCCCEEEEEEccCCccEEEEEECCCCEE-EecCCCCeEEEeeeEEcCCCCEEEEEecC
Confidence 1111 1111 1245789999 99999999999999999876 33222 3334444333 577889987765544
Q ss_pred CC----eEEEEecCCCceeeeEeeeccccCeeEEEEecCCeeeecC
Q 047325 305 DK----TICVWRRDGAIHTCLSVLTGHTGPVKCLAVEEDRDSSSST 346 (368)
Q Consensus 305 dg----~i~iw~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~ 346 (368)
++ .|..||+.++. ...+. |...+.+++|+|||+.++..
T Consensus 377 ~~~~~~~l~~~d~~~~~---~~~l~-~~~~~~~~~~spdg~~l~~~ 418 (706)
T 2z3z_A 377 ASPLERHFYCIDIKGGK---TKDLT-PESGMHRTQLSPDGSAIIDI 418 (706)
T ss_dssp SCTTCBEEEEEETTCCC---CEESC-CSSSEEEEEECTTSSEEEEE
T ss_pred CCCceEEEEEEEcCCCC---ceecc-CCCceEEEEECCCCCEEEEE
Confidence 44 55666655542 23333 67789999999999977654
No 144
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=99.89 E-value=1.5e-21 Score=181.22 Aligned_cols=272 Identities=10% Similarity=0.023 Sum_probs=182.9
Q ss_pred EEEEEecCC--EEEEccCCCcEEEEcCCcc----eecccCCCCCeeEEEEe--CCEEEEEeCCCeEEEEeecCCCccccc
Q 047325 47 IYSLAASKD--LLYTGSDSKNIRVWKNLKE----FCGFKASSGLVKAIVIS--GEKIFTGHQDGKIRVWKISPKNQSVHK 118 (368)
Q Consensus 47 i~~~~~~~~--~l~s~~~dg~i~iw~~~~~----~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~vw~~~~~~~~~~~ 118 (368)
|.+++|+++ +|++++. +.|++||+... ...+..|...+..++|+ |++|+.++ ++.|.+||+.+++.....
T Consensus 111 v~~~~~SpDg~~l~~~~~-~~i~~~d~~~~~~~~~~~l~~~~~~~~~~~~SPDG~~la~~~-~~~i~~~d~~~g~~~~~~ 188 (741)
T 2ecf_A 111 IVDYQWSPDAQRLLFPLG-GELYLYDLKQEGKAAVRQLTHGEGFATDAKLSPKGGFVSFIR-GRNLWVIDLASGRQMQLT 188 (741)
T ss_dssp SCCCEECTTSSEEEEEET-TEEEEEESSSCSTTSCCBCCCSSSCEEEEEECTTSSEEEEEE-TTEEEEEETTTTEEEECC
T ss_pred cceeEECCCCCEEEEEeC-CcEEEEECCCCCcceEEEcccCCcccccccCCCCCCEEEEEe-CCcEEEEecCCCCEEEec
Confidence 778888765 7887776 99999998754 55677888899999998 77888887 569999999876543222
Q ss_pred cCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcCCCCEEEEEeCCC----------------------
Q 047325 119 RAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCGLLYTASWDR---------------------- 176 (368)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~---------------------- 176 (368)
....... .. .....+.......+..+.|+||+++|++++.|+
T Consensus 189 ~~~~~~~----~~------------g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~ 252 (741)
T 2ecf_A 189 ADGSTTI----GN------------GIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQR 252 (741)
T ss_dssp CCCCSSE----EE------------SCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEE
T ss_pred cCCccce----ec------------cccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEee
Confidence 1110000 00 000000000112357899999999999988765
Q ss_pred -----------cEEEEEccC-CeEEEEee--cCCCceEEEEeCCCC-eEEEEcC-----CCeEEEEEcCCCCCCcccccc
Q 047325 177 -----------TFKVWRISD-SKCLESVS--AHDDAVNSVVSSSEG-LIFTGSA-----DGTVKVWKREQHGKGTKHSLA 236 (368)
Q Consensus 177 -----------~i~iwd~~~-~~~~~~~~--~~~~~v~~~~~~~~~-~l~~~~~-----dg~i~i~d~~~~~~~~~~~~~ 236 (368)
.|.+||+.+ ++...... .|...+..++| |+| .|++++. +..|++||+.++.. .
T Consensus 253 ~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~------~ 325 (741)
T 2ecf_A 253 YPAAGDANVQVKLGVISPAEQAQTQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQQ------R 325 (741)
T ss_dssp CCBTTSCCCEEEEEEECSSTTCCCEEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCCE------E
T ss_pred cCCCCCCCCeeEEEEEECCCCCceEEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCce------E
Confidence 789999988 77654443 36778999999 999 6665543 57899999986532 2
Q ss_pred eeeccccc----cEEEEEEcCCCCEEEEecCCCcEEEEeCCCccccceeeeccceEE---EEEEeCCCEEE-EeeCCC--
Q 047325 237 QTLLKQEC----AVTALVVSSSRSIVYCGSSDGLVNFWEREKQLSHGGVLKGHKLAV---LCLAAAGKLVF-SGSADK-- 306 (368)
Q Consensus 237 ~~~~~~~~----~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~---~~~~~~~~~l~-~~~~dg-- 306 (368)
.....+.. .+..++|+|+++++++++.||.+++|.+..... ...+..+...+ ..++++++.|+ +++.++
T Consensus 326 ~~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~~~~~~-~~~l~~~~~~v~~~~~~s~dg~~l~~~~~~~~~~ 404 (741)
T 2ecf_A 326 VLAHETSPTWVPLHNSLRFLDDGSILWSSERTGFQHLYRIDSKGK-AAALTHGNWSVDELLAVDEKAGLAYFRAGIESAR 404 (741)
T ss_dssp EEEEEECSSCCCCCSCCEECTTSCEEEEECTTSSCEEEEECSSSC-EEESCCSSSCEEEEEEEETTTTEEEEEECSSCTT
T ss_pred EEEEcCCCCcCCcCCceEECCCCeEEEEecCCCccEEEEEcCCCC-eeeeeecceEEEeEeEEeCCCCEEEEEEeCCCCc
Confidence 22222221 345789999999999999999888877652111 23444444433 35889998765 455555
Q ss_pred eEEEEecCCCceeeeEeeeccccCeeEEEEecCCeeeecC
Q 047325 307 TICVWRRDGAIHTCLSVLTGHTGPVKCLAVEEDRDSSSST 346 (368)
Q Consensus 307 ~i~iw~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~ 346 (368)
.+++|+++... .....+.. ...+.+++|+||++.++..
T Consensus 405 ~~~l~~~~~~g-~~~~~l~~-~~~~~~~~~spdg~~l~~~ 442 (741)
T 2ecf_A 405 ESQIYAVPLQG-GQPQRLSK-APGMHSASFARNASVYVDS 442 (741)
T ss_dssp CBEEEEEETTC-CCCEECCC-SCSEEEEEECTTSSEEEEE
T ss_pred eEEEEEEEcCC-CCeeeccc-CCCceEEEECCCCCEEEEE
Confidence 89999986431 33444544 6678899999999987754
No 145
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=99.89 E-value=2.1e-21 Score=179.73 Aligned_cols=286 Identities=9% Similarity=-0.016 Sum_probs=186.4
Q ss_pred ccCCCceeeeccCcCC---cEEEEEecCC--EEEEccCC---------CcEEEEcCCcce----ecccCCCCCeeEEEEe
Q 047325 30 NLPQNGLIGSLVREEG---HIYSLAASKD--LLYTGSDS---------KNIRVWKNLKEF----CGFKASSGLVKAIVIS 91 (368)
Q Consensus 30 ~~~~~~~~~~~~~h~~---~i~~~~~~~~--~l~s~~~d---------g~i~iw~~~~~~----~~~~~~~~~v~~~~~~ 91 (368)
+...++....+.+|.. .|.+++|+++ +|++++.+ +.|++||+.+.. .....|...+..++|+
T Consensus 43 d~~~g~~~~~~~~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~~S 122 (723)
T 1xfd_A 43 NVETNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDPQSLDPPEVSNAKLQYAGWG 122 (723)
T ss_dssp CGGGCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCCEECCCTTCCSCCCSBCCBC
T ss_pred ECCCCcEEEEeccccccccccceEEECCCCCEEEEEecCccceeecceeeEEEEECCCCceEeccCCccccccccccEEC
Confidence 3444555556666665 4899999866 88888764 788899987542 2233455568888888
Q ss_pred --CCEEEEEeCCCeEEEEeecCCCccccccCCccccceeeeeccCCCCceeEecccceeeeeecC---------CCEeEE
Q 047325 92 --GEKIFTGHQDGKIRVWKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHS---------DAVSCM 160 (368)
Q Consensus 92 --~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~v~~~ 160 (368)
|+.|+.++. +.|++||+.+++.......... ...+.++. ..+.++
T Consensus 123 PdG~~la~~~~-~~i~~~~~~~g~~~~~~~~~~~-----------------------~~~~~g~~~~v~~ee~~~~~~~~ 178 (723)
T 1xfd_A 123 PKGQQLIFIFE-NNIYYCAHVGKQAIRVVSTGKE-----------------------GVIYNGLSDWLYEEEILKTHIAH 178 (723)
T ss_dssp SSTTCEEEEET-TEEEEESSSSSCCEEEECCCBT-----------------------TTEEEEECCHHHHHTTSSSSEEE
T ss_pred CCCCEEEEEEC-CeEEEEECCCCceEEEecCCCC-----------------------CceECcccceeEEEEeccCcceE
Confidence 778988886 7999999988764322211100 00111122 234789
Q ss_pred EEcCCCCEEEEEeCCC----------------------------------cEEEEEccCCeEEEEeecC------CCceE
Q 047325 161 SLDQDCGLLYTASWDR----------------------------------TFKVWRISDSKCLESVSAH------DDAVN 200 (368)
Q Consensus 161 ~~~~~~~~l~~~~~d~----------------------------------~i~iwd~~~~~~~~~~~~~------~~~v~ 200 (368)
+|+|||+.|++++.|+ .|++||+.+++....+..+ ...+.
T Consensus 179 ~~SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~~ 258 (723)
T 1xfd_A 179 WWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPDDPRMREYYIT 258 (723)
T ss_dssp EECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCCCCGGGSSEEEE
T ss_pred EECCCCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECCCCceeEEeeCCccCCCccceeE
Confidence 9999999999887553 7999999988765566544 56789
Q ss_pred EEEeCCCC-eEEEEcC----CCeEEEEEcCCCCCCcccccceeec-cccccE----EEEEEcCCCCEEEE--ecCCC---
Q 047325 201 SVVSSSEG-LIFTGSA----DGTVKVWKREQHGKGTKHSLAQTLL-KQECAV----TALVVSSSRSIVYC--GSSDG--- 265 (368)
Q Consensus 201 ~~~~~~~~-~l~~~~~----dg~i~i~d~~~~~~~~~~~~~~~~~-~~~~~i----~~~~~~~~~~~l~~--~~~dg--- 265 (368)
.++|+||| .+++... +..|++||+..+.. ..... .+...+ ..++|+|+|+.|+. +..++
T Consensus 259 ~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~g~~------~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~ 332 (723)
T 1xfd_A 259 MVKWATSTKVAVTWLNRAQNVSILTLCDATTGVC------TKKHEDESEAWLHRQNEEPVFSKDGRKFFFIRAIPQGGRG 332 (723)
T ss_dssp EEEESSSSEEEEEEEETTSCEEEEEEEETTTCCE------EEEEEEECSSCCCCCCCCCEECTTSCSEEEEEEECCSSSS
T ss_pred EEEEeCCCeEEEEEEcCCCCeEEEEEEeCCCCcc------eEEEEeccCCEEeccCCCceEcCCCCeEEEEEecccCCCc
Confidence 99999999 5555432 35799999976521 22221 122223 37899999997775 44666
Q ss_pred ---cEEEEe-CCCccc--cceeeeccce--EEEEEEeCCCEEEEeeCC---CeEEEEecCCCceeeeEeeec---cccCe
Q 047325 266 ---LVNFWE-REKQLS--HGGVLKGHKL--AVLCLAAAGKLVFSGSAD---KTICVWRRDGAIHTCLSVLTG---HTGPV 331 (368)
Q Consensus 266 ---~i~i~d-~~~~~~--~~~~~~~~~~--~~~~~~~~~~~l~~~~~d---g~i~iw~~~~~~~~~~~~~~~---h~~~v 331 (368)
.|.+|| ...+.. ......++.. ...+++||++.|+..+.+ +.+++|+++.........+.. |...+
T Consensus 333 ~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~ 412 (723)
T 1xfd_A 333 KFYHITVSSSQPNSSNDNIQSITSGDWDVTKILAYDEKGNKIYFLSTEDLPRRRQLYSANTVGNFNRQCLSCDLVENCTY 412 (723)
T ss_dssp CEEEEEEECSSCCSSSCCCCBSCCSSSCEEEEEEEETTTTEEEEEESSSCTTCCEEEEECSSTTCCCBCSSTTSSSSCCC
T ss_pred ceeEEEEEeccCCCCccceeEeecCCeEEEeeeEEcCCCCEEEEEEcCCCCcceEEEEEeCCCCCCcceecccccCCCCe
Confidence 577777 343330 2222222222 235789999998766554 789999987543222333433 67779
Q ss_pred eEEEEecCCeeeec
Q 047325 332 KCLAVEEDRDSSSS 345 (368)
Q Consensus 332 ~~l~~~~~~~~~~~ 345 (368)
..++|+|+|+.++.
T Consensus 413 ~~~~~spdg~~l~~ 426 (723)
T 1xfd_A 413 FSASFSHSMDFFLL 426 (723)
T ss_dssp CEEEECTTSSEEEE
T ss_pred EEEEECCCCCEEEE
Confidence 99999999997764
No 146
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=99.89 E-value=4.5e-21 Score=183.90 Aligned_cols=296 Identities=9% Similarity=0.004 Sum_probs=200.4
Q ss_pred eeeeccCcCCcEEEEEecCC--EEEEccCC------CcEEEEcCCc-ceecccCCCCCe-------eEEEEe--CCEEEE
Q 047325 36 LIGSLVREEGHIYSLAASKD--LLYTGSDS------KNIRVWKNLK-EFCGFKASSGLV-------KAIVIS--GEKIFT 97 (368)
Q Consensus 36 ~~~~~~~h~~~i~~~~~~~~--~l~s~~~d------g~i~iw~~~~-~~~~~~~~~~~v-------~~~~~~--~~~l~s 97 (368)
....+.+|.+.+.+++|+++ +||+++.+ ..|++||+.. ....+..|...+ .+++|+ |+.+++
T Consensus 44 ~~~~lt~~~~~v~~~~~SPDG~~la~~s~~~~~~~~~~i~~~d~~~g~~~~lt~~~~~~~~~~~~~~~~~~SpDg~ll~~ 123 (1045)
T 1k32_A 44 STRKIVSNLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGENGEIKRITYFSGKSTGRRMFTDVAGFDPDGNLIIS 123 (1045)
T ss_dssp CEEEEECSSSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTTTEEEECCCCCEEEETTEECSEEEEECTTCCEEEE
T ss_pred cEEEeeeCCCcccCeEECCCCCEEEEEEeeccCCCCCeEEEEECCCCCeEEcccCCCcccccccccccccCCCCCEEEEE
Confidence 34567889999999999866 78877543 4799999874 355677888888 899998 666777
Q ss_pred EeCC------CeEEEEeecCCCccccccCCcc-----------------------------------cc-----------
Q 047325 98 GHQD------GKIRVWKISPKNQSVHKRAGTL-----------------------------------PT----------- 125 (368)
Q Consensus 98 ~~~d------g~i~vw~~~~~~~~~~~~~~~~-----------------------------------~~----------- 125 (368)
++.+ ..|.+|++.++........... ..
T Consensus 124 ~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~~~~~~~spG~l~~~~~~~~~~~~~~~~g~~~~~lw~~~~~~~~~~l~~~~ 203 (1045)
T 1k32_A 124 TDAMQPFSSMTCLYRVENDGINFVPLNLGPATHILFADGRRVIGRNTFELPHWKGYRGGTRGKIWIEVNSGAFKKIVDMS 203 (1045)
T ss_dssp ECTTSSSTTCCEEEEEEGGGTEEEECCSCSCSEEEEETTEEEEEESCSCCTTSTTCCSTTCCEEEEEEETTEEEEEECCS
T ss_pred ECCcCCCcccceEEEEECCCCCeEEecCCCcceeeeCCCEEEEeccCCCccccccccCCCcCCEEEECCCCCeEECcCCC
Confidence 7654 3577788766543221111000 00
Q ss_pred ---------ceee-eeccCCCC-ceeEec--ccceeeeeecCCCEeEEEEcCCCCEEEEEeCCCcEEEEEccCCeEEEEe
Q 047325 126 ---------LKDI-FKSSIKPS-NYIEVR--RHRTALWIRHSDAVSCMSLDQDCGLLYTASWDRTFKVWRISDSKCLESV 192 (368)
Q Consensus 126 ---------~~~~-~~~~~~~~-~~~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~ 192 (368)
...+ +....... .+..+. ......+..|. .+...+|+|+++.|+.+. ++.|.+||+...+ +..+
T Consensus 204 ~~v~~~~~s~d~l~~~~~~dg~~~l~~~~~~g~~~~~l~~~~-~~~~~~~SpDG~~la~~~-~~~i~~~d~~~~~-l~~l 280 (1045)
T 1k32_A 204 THVSSPVIVGHRIYFITDIDGFGQIYSTDLDGKDLRKHTSFT-DYYPRHLNTDGRRILFSK-GGSIYIFNPDTEK-IEKI 280 (1045)
T ss_dssp SCCEEEEEETTEEEEEECTTSSCEEEEEETTSCSCEECCCCC-SSCEEEEEESSSCEEEEE-TTEEEEECTTTCC-EEEC
T ss_pred CcccceEEeCCEEEEEEeccCceEEEEEeCCCCcceEecCCC-CcceeeEcCCCCEEEEEe-CCEEEEecCCceE-eeee
Confidence 0000 00000000 011110 11122223333 456789999999888875 8999999995443 3355
Q ss_pred ec-----------CCCceEEEEeC-CCC-eEEEEcCCCeEEEEEcCCCCCCcccccceeeccccc-cEEEEEEcCCCCEE
Q 047325 193 SA-----------HDDAVNSVVSS-SEG-LIFTGSADGTVKVWKREQHGKGTKHSLAQTLLKQEC-AVTALVVSSSRSIV 258 (368)
Q Consensus 193 ~~-----------~~~~v~~~~~~-~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~-~i~~~~~~~~~~~l 258 (368)
.. |...+.+++|+ |+| .+++++ ++.|.+|+..... ...+..+.. .+..++|+ +++.|
T Consensus 281 ~~~~~~~~~~~~~~~~~v~~~~~S~pdG~~la~~~-~~~i~~~~~~~~~-------~~~~~~~~~~~~~~~~~s-dg~~l 351 (1045)
T 1k32_A 281 EIGDLESPEDRIISIPSKFAEDFSPLDGDLIAFVS-RGQAFIQDVSGTY-------VLKVPEPLRIRYVRRGGD-TKVAF 351 (1045)
T ss_dssp CCCCCCBCCSEEEECGGGGEEEEEECGGGCEEEEE-TTEEEEECTTSSB-------EEECSCCSCEEEEEECSS-SEEEE
T ss_pred ccCcccccccccccccccceeeecCCCCCEEEEEE-cCEEEEEcCCCCc-------eEEccCCCcceEEeeeEc-CCCeE
Confidence 44 33468999999 999 677666 8899999987541 233455666 89999999 99999
Q ss_pred EEecCCCcEE-EEeCCCccccceeeeccce--EEEEEEeCCCEEEEeeCCCeEEEEecCCCceeeeEeeeccccCeeEEE
Q 047325 259 YCGSSDGLVN-FWEREKQLSHGGVLKGHKL--AVLCLAAAGKLVFSGSADKTICVWRRDGAIHTCLSVLTGHTGPVKCLA 335 (368)
Q Consensus 259 ~~~~~dg~i~-i~d~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~l~ 335 (368)
+.++.++.+. +||+..+... .+.+|.. ...+++||+++|++++.++.|++||+.++ +......+|...+.+++
T Consensus 352 ~~~s~~~~l~~~~d~~~~~~~--~l~~~~~~~~~~~~SpDG~~la~~~~~~~v~~~d~~tg--~~~~~~~~~~~~v~~~~ 427 (1045)
T 1k32_A 352 IHGTREGDFLGIYDYRTGKAE--KFEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETG--KPTVIERSREAMITDFT 427 (1045)
T ss_dssp EEEETTEEEEEEEETTTCCEE--ECCCCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTC--CEEEEEECSSSCCCCEE
T ss_pred EEEECCCceEEEEECCCCCce--EecCCccceeeeEECCCCCEEEEECCCCeEEEEECCCC--ceEEeccCCCCCccceE
Confidence 9988888888 9998865433 2224433 44677889999999999999999999876 44455567999999999
Q ss_pred EecCCeeeecCC
Q 047325 336 VEEDRDSSSSTS 347 (368)
Q Consensus 336 ~~~~~~~~~~~~ 347 (368)
|+|||+.+++++
T Consensus 428 ~SpDG~~la~~~ 439 (1045)
T 1k32_A 428 ISDNSRFIAYGF 439 (1045)
T ss_dssp ECTTSCEEEEEE
T ss_pred ECCCCCeEEEEe
Confidence 999999877653
No 147
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=99.89 E-value=2.4e-21 Score=174.70 Aligned_cols=252 Identities=10% Similarity=0.026 Sum_probs=177.0
Q ss_pred CCcEEEEEec--CCEEEEccC-CCcEEEEcCCcc-eecccCCC-CCeeEEEEeCC-EEEEEeC---CCeEEEEeecC--C
Q 047325 44 EGHIYSLAAS--KDLLYTGSD-SKNIRVWKNLKE-FCGFKASS-GLVKAIVISGE-KIFTGHQ---DGKIRVWKISP--K 112 (368)
Q Consensus 44 ~~~i~~~~~~--~~~l~s~~~-dg~i~iw~~~~~-~~~~~~~~-~~v~~~~~~~~-~l~s~~~---dg~i~vw~~~~--~ 112 (368)
..+|++++|+ |+.||+++. ||+++||++... ...+..|. ..+..+.|+++ .+++++. +...++|.++. .
T Consensus 21 ~~~~~~~~~~~DG~~la~~s~~~g~~~lw~~~~g~~~~lt~~~~~~~~~~~~spd~~l~~~~~~~g~~~~~l~~~~~~~~ 100 (582)
T 3o4h_A 21 AVEKYSLQGVVDGDKLLVVGFSEGSVNAYLYDGGETVKLNREPINSVLDPHYGVGRVILVRDVSKGAEQHALFKVNTSRP 100 (582)
T ss_dssp HSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTEEEECCSSCCSEECEECTTCSEEEEEEECSTTSCCEEEEEEETTST
T ss_pred ccchheeecCCCCCeEEEEEccCCceeEEEEcCCCcEeeecccccccccccCCCCeEEEEeccCCCCcceEEEEEeccCC
Confidence 4568888876 558888877 999999997543 33445555 58899999844 4555554 45667776654 2
Q ss_pred CccccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcCCCC-EEEEEeCCCcEEEEEccCCeEEEE
Q 047325 113 NQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCG-LLYTASWDRTFKVWRISDSKCLES 191 (368)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~i~iwd~~~~~~~~~ 191 (368)
....... ....+...+|+|+++ .+++.+.++.+.+||+.+++....
T Consensus 101 g~~~~l~---------------------------------~~~~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~g~~~~l 147 (582)
T 3o4h_A 101 GEEQRLE---------------------------------AVKPMRILSGVDTGEAVVFTGATEDRVALYALDGGGLREL 147 (582)
T ss_dssp TCCEECT---------------------------------TSCSBEEEEEEECSSCEEEEEECSSCEEEEEEETTEEEEE
T ss_pred Ccccccc---------------------------------CCCCceeeeeCCCCCeEEEEecCCCCceEEEccCCcEEEe
Confidence 2111110 112334567788775 334444455566999999887665
Q ss_pred eecCCCceEEEEeCCCC-eEEEEcCC----CeEEEEEcCCCCCCcccccceeeccccccEEEEEEcCCCCEEEEecCCC-
Q 047325 192 VSAHDDAVNSVVSSSEG-LIFTGSAD----GTVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSSSRSIVYCGSSDG- 265 (368)
Q Consensus 192 ~~~~~~~v~~~~~~~~~-~l~~~~~d----g~i~i~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg- 265 (368)
...+. .+++|+||| .|++++.+ +.|++||+..+. ...+..+...+..++|+|||+.|+++..++
T Consensus 148 ~~~~~---~~~~~spDG~~la~~~~~~~~~~~i~~~d~~~g~-------~~~l~~~~~~~~~~~~SpDG~~l~~~~~~~~ 217 (582)
T 3o4h_A 148 ARLPG---FGFVSDIRGDLIAGLGFFGGGRVSLFTSNLSSGG-------LRVFDSGEGSFSSASISPGMKVTAGLETARE 217 (582)
T ss_dssp EEESS---CEEEEEEETTEEEEEEEEETTEEEEEEEETTTCC-------CEEECCSSCEEEEEEECTTSCEEEEEECSSC
T ss_pred ecCCC---ceEEECCCCCEEEEEEEcCCCCeEEEEEcCCCCC-------ceEeecCCCccccceECCCCCEEEEccCCCe
Confidence 55443 789999999 77777766 789999987652 345567778899999999999999888888
Q ss_pred -cEEEEeCCCccccceeeeccceEE--E--------EEEeCCCEEEEeeCCCeEEEEecCCCceeeeEeeeccccCeeEE
Q 047325 266 -LVNFWEREKQLSHGGVLKGHKLAV--L--------CLAAAGKLVFSGSADKTICVWRRDGAIHTCLSVLTGHTGPVKCL 334 (368)
Q Consensus 266 -~i~i~d~~~~~~~~~~~~~~~~~~--~--------~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~l 334 (368)
.|++||+.++... ....|...+ . +++|||.++++++.||.+++|++ + +... .+.+.|.++
T Consensus 218 ~~i~~~d~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~--g--~~~~---~~~~~v~~~ 288 (582)
T 3o4h_A 218 ARLVTVDPRDGSVE--DLELPSKDFSSYRPTAITWLGYLPDGRLAVVARREGRSAVFID--G--ERVE---APQGNHGRV 288 (582)
T ss_dssp EEEEEECTTTCCEE--ECCCSCSHHHHHCCSEEEEEEECTTSCEEEEEEETTEEEEEET--T--EEEC---CCSSEEEEE
T ss_pred eEEEEEcCCCCcEE--EccCCCcChhhhhhccccceeEcCCCcEEEEEEcCCcEEEEEE--C--Ceec---cCCCceEEE
Confidence 8999999876554 334443222 2 38899999999999999999998 3 3332 344678999
Q ss_pred EEecCCeeeecCCc
Q 047325 335 AVEEDRDSSSSTSS 348 (368)
Q Consensus 335 ~~~~~~~~~~~~~~ 348 (368)
+|+ +++.+++++.
T Consensus 289 ~~s-dg~~l~~~s~ 301 (582)
T 3o4h_A 289 VLW-RGKLVTSHTS 301 (582)
T ss_dssp EEE-TTEEEEEEEE
T ss_pred Eec-CCEEEEEEcC
Confidence 999 9987766543
No 148
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=99.89 E-value=9.4e-20 Score=154.45 Aligned_cols=276 Identities=13% Similarity=0.137 Sum_probs=172.6
Q ss_pred cCCcEEEEEecCC--EEEEccCC----CcEEEEcCCc--c----eecccCCCCCeeEEEEeCCEEEEEe-CCCeEEEEee
Q 047325 43 EEGHIYSLAASKD--LLYTGSDS----KNIRVWKNLK--E----FCGFKASSGLVKAIVISGEKIFTGH-QDGKIRVWKI 109 (368)
Q Consensus 43 h~~~i~~~~~~~~--~l~s~~~d----g~i~iw~~~~--~----~~~~~~~~~~v~~~~~~~~~l~s~~-~dg~i~vw~~ 109 (368)
|......++|+++ +|++++.+ +.|.+|++.. . +.....+......+++++++|++++ .++.|.+|++
T Consensus 48 ~~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~~~~~~~~~~~p~~~~~dg~~l~~~~~~~~~v~~~~~ 127 (361)
T 3scy_A 48 EVANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKGTLHLLNTQKTMGADPCYLTTNGKNIVTANYSGGSITVFPI 127 (361)
T ss_dssp ECSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTTEEEEEEEEECSSSCEEEEEECSSEEEEEETTTTEEEEEEB
T ss_pred cCCCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCCcEEEeeEeccCCCCcEEEEECCCEEEEEECCCCEEEEEEe
Confidence 6677777888755 78888775 7999998653 1 2233345566777778888777776 5889999999
Q ss_pred cCCCccccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcCCCCEEEEEe-CCCcEEEEEccCCe-
Q 047325 110 SPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCGLLYTAS-WDRTFKVWRISDSK- 187 (368)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d~~i~iwd~~~~~- 187 (368)
............ .... .........+...+.+++|+|+++++++++ .++.|.+|++....
T Consensus 128 ~~~g~~~~~~~~--------~~~~----------g~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~v~~~~~~~~ 189 (361)
T 3scy_A 128 GQDGALLPASDV--------IEFK----------GSGPDKERQTMPHLHCVRITPDGKYLLADDLGTDQIHKFNINPNAN 189 (361)
T ss_dssp CTTSCBCSCSEE--------EECC----------CCCSCTTTCSSCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTCC
T ss_pred CCCCcCccccee--------EEcc----------CCCCCccccCCCcceEEEECCCCCEEEEEeCCCCEEEEEEEcCCCC
Confidence 765432211100 0000 000000001334578899999999776665 47899999887533
Q ss_pred ------E------EEEeecCCCceEEEEeCCCC-eEEEEc-CCCeEEEEEcCCCCCCcccccceeeccccccEEEEEEcC
Q 047325 188 ------C------LESVSAHDDAVNSVVSSSEG-LIFTGS-ADGTVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSS 253 (368)
Q Consensus 188 ------~------~~~~~~~~~~v~~~~~~~~~-~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 253 (368)
. ......+...+..++|+|++ ++++++ .++.|.+||++.+.. ...........+......++|+|
T Consensus 190 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g~~-~~~~~~~~~~~~~~~~~~i~~sp 268 (361)
T 3scy_A 190 ADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDGKFAYLINEIGGTVIAFRYADGML-DEIQTVAADTVNAQGSGDIHLSP 268 (361)
T ss_dssp TTTCCCCEEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTCEEEEEEEETTEE-EEEEEEESCSSCCCCEEEEEECT
T ss_pred cccccceeecccccceecCCCCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecCCce-EEeEEEecCCCCCCCcccEEECC
Confidence 1 11122344567899999999 566655 689999999974311 00111112223334568999999
Q ss_pred CCCEEEEecCC--CcEEEEeCC--Cccc-cceeee-ccceEEEEEEeCCCEEEEee-CCCeEEEEecCCCceeeeEee-e
Q 047325 254 SRSIVYCGSSD--GLVNFWERE--KQLS-HGGVLK-GHKLAVLCLAAAGKLVFSGS-ADKTICVWRRDGAIHTCLSVL-T 325 (368)
Q Consensus 254 ~~~~l~~~~~d--g~i~i~d~~--~~~~-~~~~~~-~~~~~~~~~~~~~~~l~~~~-~dg~i~iw~~~~~~~~~~~~~-~ 325 (368)
++++|+++..+ +.|.+|++. ++.. ...... +....-++++|++++|++++ .++.|.+|+++...++..... .
T Consensus 269 dg~~l~v~~~~~~~~i~v~~~~~~~g~~~~~~~~~~g~~~~~~~~spdg~~l~~~~~~~~~v~v~~~d~~~g~~~~~~~~ 348 (361)
T 3scy_A 269 DGKYLYASNRLKADGVAIFKVDETNGTLTKVGYQLTGIHPRNFIITPNGKYLLVACRDTNVIQIFERDQATGLLTDIKKD 348 (361)
T ss_dssp TSSEEEEEECSSSCEEEEEEECTTTCCEEEEEEEECSSCCCEEEECTTSCEEEEEETTTTEEEEEEECTTTCCEEECSCC
T ss_pred CCCEEEEECCCCCCEEEEEEEcCCCCcEEEeeEecCCCCCceEEECCCCCEEEEEECCCCCEEEEEEECCCCcEeeccee
Confidence 99988776654 899999986 2221 111121 22334477889999888887 679999987764433433322 2
Q ss_pred ccccCeeEEEEe
Q 047325 326 GHTGPVKCLAVE 337 (368)
Q Consensus 326 ~h~~~v~~l~~~ 337 (368)
.+...+.|+.|.
T Consensus 349 ~~~~~p~~v~~~ 360 (361)
T 3scy_A 349 IKVDKPVCLKFV 360 (361)
T ss_dssp EECSSEEEEEEE
T ss_pred eeCCCCeEEEEc
Confidence 244578898886
No 149
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=99.88 E-value=1.5e-21 Score=160.61 Aligned_cols=211 Identities=12% Similarity=0.084 Sum_probs=150.7
Q ss_pred EEeCCCeEEEEeecCCCccccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcCCCCEEEEEeCCC
Q 047325 97 TGHQDGKIRVWKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCGLLYTASWDR 176 (368)
Q Consensus 97 s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~ 176 (368)
.++.|+.|++||+.+++.. .+..|...|.+++|+|++++|++++ ++
T Consensus 17 ~~~~~~~i~~~d~~~~~~~---------------------------------~~~~~~~~v~~~~~spdg~~l~~~~-~~ 62 (297)
T 2ojh_A 17 GGSMRSSIEIFNIRTRKMR---------------------------------VVWQTPELFEAPNWSPDGKYLLLNS-EG 62 (297)
T ss_dssp -CCCCEEEEEEETTTTEEE---------------------------------EEEEESSCCEEEEECTTSSEEEEEE-TT
T ss_pred CCCcceeEEEEeCCCCcee---------------------------------eeccCCcceEeeEECCCCCEEEEEc-CC
Confidence 3467899999999876522 2234888999999999999999987 78
Q ss_pred cEEEEEccC-CeEEEEeecC-CCceEEEEeCCCC-eEEEEc--CCCeEEEEEcCCCCCCcccccceeeccccccEEEEEE
Q 047325 177 TFKVWRISD-SKCLESVSAH-DDAVNSVVSSSEG-LIFTGS--ADGTVKVWKREQHGKGTKHSLAQTLLKQECAVTALVV 251 (368)
Q Consensus 177 ~i~iwd~~~-~~~~~~~~~~-~~~v~~~~~~~~~-~l~~~~--~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 251 (368)
.|.+||+.+ ++.......+ ...+.+++|+|++ .|++++ .++...+|.++.... ....+..+ ..+..++|
T Consensus 63 ~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~-----~~~~~~~~-~~~~~~~~ 136 (297)
T 2ojh_A 63 LLYRLSLAGDPSPEKVDTGFATICNNDHGISPDGALYAISDKVEFGKSAIYLLPSTGG-----TPRLMTKN-LPSYWHGW 136 (297)
T ss_dssp EEEEEESSSCCSCEECCCTTCCCBCSCCEECTTSSEEEEEECTTTSSCEEEEEETTCC-----CCEECCSS-SSEEEEEE
T ss_pred eEEEEeCCCCCCceEeccccccccccceEECCCCCEEEEEEeCCCCcceEEEEECCCC-----ceEEeecC-CCccceEE
Confidence 999999998 8777766665 3678899999999 777777 334555555543221 12222222 34888999
Q ss_pred cCCCCEEE-EecCCCcEEEEeCCCccccceeeeccceE--EEEEEeCCCEEEEee-CCCeEEEEecCCCceeeeEeeecc
Q 047325 252 SSSRSIVY-CGSSDGLVNFWEREKQLSHGGVLKGHKLA--VLCLAAAGKLVFSGS-ADKTICVWRRDGAIHTCLSVLTGH 327 (368)
Q Consensus 252 ~~~~~~l~-~~~~dg~i~i~d~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~~~-~dg~i~iw~~~~~~~~~~~~~~~h 327 (368)
+|+++.|+ ++..++.+++|+++........+..+... ..+++|++++|+.++ .++.+++|+++... ..+..+..|
T Consensus 137 spdg~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~-~~~~~~~~~ 215 (297)
T 2ojh_A 137 SPDGKSFTYCGIRDQVFDIYSMDIDSGVETRLTHGEGRNDGPDYSPDGRWIYFNSSRTGQMQIWRVRVDG-SSVERITDS 215 (297)
T ss_dssp CTTSSEEEEEEEETTEEEEEEEETTTCCEEECCCSSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTS-SCEEECCCC
T ss_pred CCCCCEEEEEECCCCceEEEEEECCCCcceEcccCCCccccceECCCCCEEEEEecCCCCccEEEECCCC-CCcEEEecC
Confidence 99999877 77889999999864322222333344433 356677899877665 58999999986332 345667778
Q ss_pred ccCeeEEEEecCCeeeecCCc
Q 047325 328 TGPVKCLAVEEDRDSSSSTSS 348 (368)
Q Consensus 328 ~~~v~~l~~~~~~~~~~~~~~ 348 (368)
...+..++|+|+++.++.++.
T Consensus 216 ~~~~~~~~~s~dg~~l~~~~~ 236 (297)
T 2ojh_A 216 AYGDWFPHPSPSGDKVVFVSY 236 (297)
T ss_dssp SEEEEEEEECTTSSEEEEEEE
T ss_pred CcccCCeEECCCCCEEEEEEc
Confidence 888999999999998776543
No 150
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=99.88 E-value=1.5e-20 Score=157.67 Aligned_cols=251 Identities=10% Similarity=0.091 Sum_probs=171.8
Q ss_pred CCCceeeeccCcC-C-cEEEEEecCC---EEEEccCCCcEEEEcCCcc--eecccC-C----CCCeeEEEEe--CCEEEE
Q 047325 32 PQNGLIGSLVREE-G-HIYSLAASKD---LLYTGSDSKNIRVWKNLKE--FCGFKA-S----SGLVKAIVIS--GEKIFT 97 (368)
Q Consensus 32 ~~~~~~~~~~~h~-~-~i~~~~~~~~---~l~s~~~dg~i~iw~~~~~--~~~~~~-~----~~~v~~~~~~--~~~l~s 97 (368)
...+.+..+.... . .+..++++++ ++++++.++.|.+||+.+. ...+.. + ...+..++|+ +++|++
T Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~ 98 (337)
T 1pby_B 19 EKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAI 98 (337)
T ss_dssp TTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEEECTTCEEECTTSSEEEE
T ss_pred CCCcEEEEEEcCCCCCCccceEEcCCCCEEEEEeCCCCeEEEEECCCCCeEeeEEcCCcccccccccceEECCCCCEEEE
Confidence 3445555544222 1 4677888654 4567777899999998643 222321 1 2256778887 678888
Q ss_pred Ee------------CCCeEEEEeecCCCccccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcCC
Q 047325 98 GH------------QDGKIRVWKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQD 165 (368)
Q Consensus 98 ~~------------~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 165 (368)
++ .++.|.+||+.+++...... ....+.+++|+|+
T Consensus 99 ~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~---------------------------------~~~~~~~~~~s~d 145 (337)
T 1pby_B 99 YESPVRLELTHFEVQPTRVALYDAETLSRRKAFE---------------------------------APRQITMLAWARD 145 (337)
T ss_dssp EEEEEEECSSCEEECCCEEEEEETTTTEEEEEEE---------------------------------CCSSCCCEEECTT
T ss_pred EecccccccccccccCceEEEEECCCCcEEEEEe---------------------------------CCCCcceeEECCC
Confidence 86 57999999998765322111 2345678899999
Q ss_pred CCEEEEEeCCCcEEEEEccCCeEEEEeecCCCceEEEEeCCCC-eEEEEc-CCC-----------------------eEE
Q 047325 166 CGLLYTASWDRTFKVWRISDSKCLESVSAHDDAVNSVVSSSEG-LIFTGS-ADG-----------------------TVK 220 (368)
Q Consensus 166 ~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~-~dg-----------------------~i~ 220 (368)
+++|+++ ++.|.+||+.+++.+..+..+... ..+.++|++ .++..+ .++ .|.
T Consensus 146 g~~l~~~--~~~i~~~d~~~~~~~~~~~~~~~~-~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 222 (337)
T 1pby_B 146 GSKLYGL--GRDLHVMDPEAGTLVEDKPIQSWE-AETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLL 222 (337)
T ss_dssp SSCEEEE--SSSEEEEETTTTEEEEEECSTTTT-TTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEE
T ss_pred CCEEEEe--CCeEEEEECCCCcEeeeeeccccC-CCceeCCCccEEeeeccCCCceeeeeeccccccccccccccccceE
Confidence 9988887 688999999999988777654311 123778888 444333 233 468
Q ss_pred EEEcCCCCCCcccccceeeccccccEEEEEEcCCCCEEEEecCCCcEEEEeCCCccccceeeeccceEEEEEEeCCCEEE
Q 047325 221 VWKREQHGKGTKHSLAQTLLKQECAVTALVVSSSRSIVYCGSSDGLVNFWEREKQLSHGGVLKGHKLAVLCLAAAGKLVF 300 (368)
Q Consensus 221 i~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 300 (368)
+||++.... .......+...+.+++|+|++++++++ ++.|.+||+.+++.......++....+++++++++|+
T Consensus 223 ~~d~~~~~~-----~~~~~~~~~~~~~~~~~s~dg~~l~~~--~~~v~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~ 295 (337)
T 1pby_B 223 TMDLETGEM-----AMREVRIMDVFYFSTAVNPAKTRAFGA--YNVLESFDLEKNASIKRVPLPHSYYSVNVSTDGSTVW 295 (337)
T ss_dssp EEETTTCCE-----EEEEEEECSSCEEEEEECTTSSEEEEE--ESEEEEEETTTTEEEEEEECSSCCCEEEECTTSCEEE
T ss_pred EEeCCCCCc-----eEeecCCCCCceeeEEECCCCCEEEEe--CCeEEEEECCCCcCcceecCCCceeeEEECCCCCEEE
Confidence 999876532 122334455678899999999999988 7999999998876554443344455577888999999
Q ss_pred EeeCCCeEEEEecCCCceeeeEeeecc
Q 047325 301 SGSADKTICVWRRDGAIHTCLSVLTGH 327 (368)
Q Consensus 301 ~~~~dg~i~iw~~~~~~~~~~~~~~~h 327 (368)
+++.++.|++||+.+. +.+..+..+
T Consensus 296 ~~~~~~~i~v~d~~~~--~~~~~~~~~ 320 (337)
T 1pby_B 296 LGGALGDLAAYDAETL--EKKGQVDLP 320 (337)
T ss_dssp EESBSSEEEEEETTTC--CEEEEEECG
T ss_pred EEcCCCcEEEEECcCC--cEEEEEEcC
Confidence 9999999999999876 455555443
No 151
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=99.88 E-value=5.3e-20 Score=154.07 Aligned_cols=249 Identities=9% Similarity=0.073 Sum_probs=165.5
Q ss_pred ccCCCceeeeccCcCCcEEEEEecCC--EEE-EccCCCcEEEEcCCcc---eecccCCCCCeeEEEEe--CCEEEEEeCC
Q 047325 30 NLPQNGLIGSLVREEGHIYSLAASKD--LLY-TGSDSKNIRVWKNLKE---FCGFKASSGLVKAIVIS--GEKIFTGHQD 101 (368)
Q Consensus 30 ~~~~~~~~~~~~~h~~~i~~~~~~~~--~l~-s~~~dg~i~iw~~~~~---~~~~~~~~~~v~~~~~~--~~~l~s~~~d 101 (368)
+...++++..+..+...+ +++++++ +++ ++..++.|.+||.... ...+..+..+..+++|+ +++++++..+
T Consensus 26 d~~~~~~~~~~~~~~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~ 104 (331)
T 3u4y_A 26 STDTLEILNQITLGYDFV-DTAITSDCSNVVVTSDFCQTLVQIETQLEPPKVVAIQEGQSSMADVDITPDDQFAVTVTGL 104 (331)
T ss_dssp ETTTCCEEEEEECCCCEE-EEEECSSSCEEEEEESTTCEEEEEECSSSSCEEEEEEECSSCCCCEEECTTSSEEEECCCS
T ss_pred eCcccceeeeEEccCCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCCCceeEEecccCCCCccceEECCCCCEEEEecCC
Confidence 345566666666666667 8888754 444 4555899999998643 34455566666658887 7788855555
Q ss_pred C---eEEEEeecCCCccccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcCCCCEEEEE-eCCCc
Q 047325 102 G---KIRVWKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCGLLYTA-SWDRT 177 (368)
Q Consensus 102 g---~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~d~~ 177 (368)
+ .|.+||+.+++...... ......+++|+|++++++++ ..++.
T Consensus 105 ~~~~~i~v~d~~~~~~~~~~~---------------------------------~~~~~~~~~~spdg~~l~~~~~~~~~ 151 (331)
T 3u4y_A 105 NHPFNMQSYSFLKNKFISTIP---------------------------------IPYDAVGIAISPNGNGLILIDRSSAN 151 (331)
T ss_dssp SSSCEEEEEETTTTEEEEEEE---------------------------------CCTTEEEEEECTTSSCEEEEEETTTT
T ss_pred CCcccEEEEECCCCCeEEEEE---------------------------------CCCCccceEECCCCCEEEEEecCCCc
Confidence 3 89999998765322111 33456899999999866555 55588
Q ss_pred -EEEEEccCCeEE----EEeecCCCceEEEEeCCCC-eE-EEEcCCCeEEEEEcCCCCCCcccccceeeccccccEEEEE
Q 047325 178 -FKVWRISDSKCL----ESVSAHDDAVNSVVSSSEG-LI-FTGSADGTVKVWKREQHGKGTKHSLAQTLLKQECAVTALV 250 (368)
Q Consensus 178 -i~iwd~~~~~~~----~~~~~~~~~v~~~~~~~~~-~l-~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~i~~~~ 250 (368)
|.+|++.....+ ............++|+|++ .+ +++..++.|.+||++.... ......+. ....+..++
T Consensus 152 ~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~---~~~~~~~~-~~~~~~~~~ 227 (331)
T 3u4y_A 152 TVRRFKIDADGVLFDTGQEFISGGTRPFNITFTPDGNFAFVANLIGNSIGILETQNPEN---ITLLNAVG-TNNLPGTIV 227 (331)
T ss_dssp EEEEEEECTTCCEEEEEEEEECSSSSEEEEEECTTSSEEEEEETTTTEEEEEECSSTTS---CEEEEEEE-CSSCCCCEE
T ss_pred eEEEEEECCCCcEeecCCccccCCCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcc---cceeeecc-CCCCCceEE
Confidence 999998754322 1122344567899999999 44 5555789999999986532 01122332 335677899
Q ss_pred EcCCCCEEEEec-CCCcEEEEeCCCccccc-eeeec------cc---eEEEEEEeCCCEEEEee-CCCeEEEEecCCC
Q 047325 251 VSSSRSIVYCGS-SDGLVNFWEREKQLSHG-GVLKG------HK---LAVLCLAAAGKLVFSGS-ADKTICVWRRDGA 316 (368)
Q Consensus 251 ~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~-~~~~~------~~---~~~~~~~~~~~~l~~~~-~dg~i~iw~~~~~ 316 (368)
|+|+++++++++ .++.|.+||+++++... ..... .. ...++++|++++|++++ .++.|.+||+...
T Consensus 228 ~spdg~~l~v~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~ 305 (331)
T 3u4y_A 228 VSRDGSTVYVLTESTVDVFNFNQLSGTLSFVKSFGHGLLIDPRPLFGANQMALNKTETKLFISANISRELKVFTISGK 305 (331)
T ss_dssp ECTTSSEEEEECSSEEEEEEEETTTTEEEEEEEEECCCCCCCGGGTTCCCEEECTTSSEEEEEETTTTEEEEEETTSC
T ss_pred ECCCCCEEEEEEcCCCEEEEEECCCCceeeecccccccccCCCCcccccceEECCCCCEEEEecCCCCcEEEEEecCC
Confidence 999999776554 57889999998765411 11111 11 12258899999886555 5679999999775
No 152
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=99.88 E-value=8.5e-22 Score=170.26 Aligned_cols=187 Identities=11% Similarity=0.125 Sum_probs=137.2
Q ss_pred CCCEeEEEEcCCCCEEEEEeCCCcEEEEEccCCe----------EEEE-----eecCCCceEEEEeCCCC-eEE----EE
Q 047325 154 SDAVSCMSLDQDCGLLYTASWDRTFKVWRISDSK----------CLES-----VSAHDDAVNSVVSSSEG-LIF----TG 213 (368)
Q Consensus 154 ~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~----------~~~~-----~~~~~~~v~~~~~~~~~-~l~----~~ 213 (368)
...++.+++++++.++++++.++ +++|+..... .+.. .-.+...|.+++|+|++ +|+ ++
T Consensus 36 ~~~~n~lavs~~~~~l~~~~~dg-v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~lav~~~sg 114 (434)
T 2oit_A 36 KERSSLLAVSNKYGLVFAGGASG-LQIFPTKNLLIQNKPGDDPNKIVDKVQGLLVPMKFPIHHLALSCDNLTLSACMMSS 114 (434)
T ss_dssp CSCCBCEEEETTTTEEEEEETTE-EEEEEHHHHCCCCCTTCCTTCEEECCCCEEECCSSCEEEEEECTTSCEEEEEEEET
T ss_pred CCCccEEEEecCCCEEEEECCCE-EEEEEchHhhhhcccccCcccccccCccccccCCCcccEEEEcCCCCEEEEEEecc
Confidence 34578899999999999999887 8998753210 0110 11245679999999999 777 78
Q ss_pred cCCCeEEEEEcCCCC-----CCcccccceeeccccccEEEEEEcCC-CCEEEEecCCCcEEEEeCCCccccceeeeccce
Q 047325 214 SADGTVKVWKREQHG-----KGTKHSLAQTLLKQECAVTALVVSSS-RSIVYCGSSDGLVNFWEREKQLSHGGVLKGHKL 287 (368)
Q Consensus 214 ~~dg~i~i~d~~~~~-----~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~ 287 (368)
+.|+.|++||++... ..........+.+|...|.+++|+|+ +++|++++.||.|++||++++... ....+|..
T Consensus 115 s~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~v~iwD~~~~~~~-~~~~~~~~ 193 (434)
T 2oit_A 115 EYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGSIAVLQVTETVKV-CATLPSTV 193 (434)
T ss_dssp TTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETTSCEEEEEESSSEEE-EEEECGGG
T ss_pred CCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEECCCeEEEEEcCCCcce-eeccCCCC
Confidence 889999999986531 00111123445678999999999997 789999999999999999987443 33445655
Q ss_pred EE--EEEEeCCCEEEEeeCCCeEEEEecCCCceeeeEeeec-------cccCeeEEEEecCCeeeec
Q 047325 288 AV--LCLAAAGKLVFSGSADKTICVWRRDGAIHTCLSVLTG-------HTGPVKCLAVEEDRDSSSS 345 (368)
Q Consensus 288 ~~--~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~-------h~~~v~~l~~~~~~~~~~~ 345 (368)
.+ ++++|++++|++|+.||.|++||++. .....+.. |...|.+++|++++.++++
T Consensus 194 ~v~~v~wspdg~~lasgs~dg~v~iwd~~~---~~~~~~~~~~~~~~~~~~~v~~v~w~~~~~~l~~ 257 (434)
T 2oit_A 194 AVTSVCWSPKGKQLAVGKQNGTVVQYLPTL---QEKKVIPCPPFYESDHPVRVLDVLWIGTYVFAIV 257 (434)
T ss_dssp CEEEEEECTTSSCEEEEETTSCEEEECTTC---CEEEEECCCTTCCTTSCEEEEEEEEEETTEEEEE
T ss_pred ceeEEEEcCCCCEEEEEcCCCcEEEEccCC---cccccccCCcccCCCCceeEEEEEEecCceEEEE
Confidence 55 45566899999999999999999873 22233322 3348999999999998743
No 153
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=99.87 E-value=9.3e-20 Score=153.91 Aligned_cols=219 Identities=9% Similarity=0.083 Sum_probs=157.9
Q ss_pred CCCeeEEEEe--CCEEEEEeC-------CCeEEEEeecCCCccccccCCccccceeeeeccCCCCceeEecccceeeeee
Q 047325 82 SGLVKAIVIS--GEKIFTGHQ-------DGKIRVWKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIR 152 (368)
Q Consensus 82 ~~~v~~~~~~--~~~l~s~~~-------dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (368)
...+..++++ ++++++++. ++.|.+||..+++......
T Consensus 40 ~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~--------------------------------- 86 (353)
T 3vgz_A 40 GKGAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEVTQAIH--------------------------------- 86 (353)
T ss_dssp ESSEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCCEEEEEE---------------------------------
T ss_pred ccCccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEEEe---------------------------------
Confidence 3456788888 678887774 5689999998776432221
Q ss_pred cCCCEeEEEEcCCCCEEEEE-eCCCcEEEEEccCCeEEEEeecCCCc---------eEEEEeCCCC-eEEEEc--CCCeE
Q 047325 153 HSDAVSCMSLDQDCGLLYTA-SWDRTFKVWRISDSKCLESVSAHDDA---------VNSVVSSSEG-LIFTGS--ADGTV 219 (368)
Q Consensus 153 ~~~~v~~~~~~~~~~~l~~~-~~d~~i~iwd~~~~~~~~~~~~~~~~---------v~~~~~~~~~-~l~~~~--~dg~i 219 (368)
....+..++++|++++++++ ..++.|.+||+.+++.+..+..+... +.+++++|++ .+++++ .++.|
T Consensus 87 ~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i 166 (353)
T 3vgz_A 87 NDLKPFGATINNTTQTLWFGNTVNSAVTAIDAKTGEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVI 166 (353)
T ss_dssp ESSCCCSEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEE
T ss_pred cCCCcceEEECCCCCEEEEEecCCCEEEEEeCCCCeeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceE
Confidence 23446779999999966555 45799999999999988888765422 6889999998 555554 58899
Q ss_pred EEEEcCCCCCCcccccceeeccccccEEEEEEcCCCCEEEEecCCCcEEEEeCCCccccceeee-----ccceEEEEEEe
Q 047325 220 KVWKREQHGKGTKHSLAQTLLKQECAVTALVVSSSRSIVYCGSSDGLVNFWEREKQLSHGGVLK-----GHKLAVLCLAA 294 (368)
Q Consensus 220 ~i~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~-----~~~~~~~~~~~ 294 (368)
.+||.+... ....+..+...+..++|+|+++++++++.++.|.+||..+++....... .+...-++++|
T Consensus 167 ~~~d~~~~~------~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 240 (353)
T 3vgz_A 167 WVVDGGNIK------LKTAIQNTGKMSTGLALDSEGKRLYTTNADGELITIDTADNKILSRKKLLDDGKEHFFINISLDT 240 (353)
T ss_dssp EEEETTTTE------EEEEECCCCTTCCCCEEETTTTEEEEECTTSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEET
T ss_pred EEEcCCCCc------eEEEecCCCCccceEEECCCCCEEEEEcCCCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECC
Confidence 999997652 3333433445578899999999999999999999999988765533322 12223367889
Q ss_pred CCCEEEEeeC-CCeEEEEecCCCceeeeEeeeccccCeeEEEEecCCeee
Q 047325 295 AGKLVFSGSA-DKTICVWRRDGAIHTCLSVLTGHTGPVKCLAVEEDRDSS 343 (368)
Q Consensus 295 ~~~~l~~~~~-dg~i~iw~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~ 343 (368)
+++++++++. ++.|.+||..+. +.+..+.... ...++|+|+++.+
T Consensus 241 dg~~l~~~~~~~~~v~~~d~~~~--~~~~~~~~~~--~~~~~~s~dg~~l 286 (353)
T 3vgz_A 241 ARQRAFITDSKAAEVLVVDTRNG--NILAKVAAPE--SLAVLFNPARNEA 286 (353)
T ss_dssp TTTEEEEEESSSSEEEEEETTTC--CEEEEEECSS--CCCEEEETTTTEE
T ss_pred CCCEEEEEeCCCCEEEEEECCCC--cEEEEEEcCC--CceEEECCCCCEE
Confidence 9997776665 599999999776 4444554332 2679999999843
No 154
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=99.87 E-value=3e-19 Score=151.34 Aligned_cols=262 Identities=9% Similarity=0.112 Sum_probs=165.3
Q ss_pred cCCCcEEEEcCC--cc----eecccCCCCCeeEEEEe--CCEEEEEeCC----CeEEEEeecCCCccccccCCcccccee
Q 047325 61 SDSKNIRVWKNL--KE----FCGFKASSGLVKAIVIS--GEKIFTGHQD----GKIRVWKISPKNQSVHKRAGTLPTLKD 128 (368)
Q Consensus 61 ~~dg~i~iw~~~--~~----~~~~~~~~~~v~~~~~~--~~~l~s~~~d----g~i~vw~~~~~~~~~~~~~~~~~~~~~ 128 (368)
+.++.|.+|++. +. +... +......++|+ +++|++++.+ +.|.+|+++........
T Consensus 24 ~~~~~i~~~~~d~~~g~~~~~~~~--~~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~---------- 91 (361)
T 3scy_A 24 GNSKGIYTFRFNEETGESLPLSDA--EVANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKGTLHL---------- 91 (361)
T ss_dssp SSCCEEEEEEEETTTCCEEEEEEE--ECSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTTEEEE----------
T ss_pred CCCCCEEEEEEeCCCCCEEEeecc--cCCCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCCcEEE----------
Confidence 456789999653 21 1222 66677778887 7789998886 89999998764210000
Q ss_pred eeeccCCCCceeEecccceeeeeecCCCEeEEEEcCCCCEEEEEe-CCCcEEEEEccCCeEEEEe------ec-------
Q 047325 129 IFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCGLLYTAS-WDRTFKVWRISDSKCLESV------SA------- 194 (368)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d~~i~iwd~~~~~~~~~~------~~------- 194 (368)
......+......+++ ++++|++++ .++.|.+|++.....+..+ .+
T Consensus 92 ------------------~~~~~~~~~~p~~~~~--dg~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~~~~~~ 151 (361)
T 3scy_A 92 ------------------LNTQKTMGADPCYLTT--NGKNIVTANYSGGSITVFPIGQDGALLPASDVIEFKGSGPDKER 151 (361)
T ss_dssp ------------------EEEEECSSSCEEEEEE--CSSEEEEEETTTTEEEEEEBCTTSCBCSCSEEEECCCCCSCTTT
T ss_pred ------------------eeEeccCCCCcEEEEE--CCCEEEEEECCCCEEEEEEeCCCCcCcccceeEEccCCCCCccc
Confidence 0001113445667777 777777776 5789999999754322211 11
Q ss_pred -CCCceEEEEeCCCC-eEEE-EcCCCeEEEEEcCCCCC------Cccc-ccceeeccccccEEEEEEcCCCCEEEEec-C
Q 047325 195 -HDDAVNSVVSSSEG-LIFT-GSADGTVKVWKREQHGK------GTKH-SLAQTLLKQECAVTALVVSSSRSIVYCGS-S 263 (368)
Q Consensus 195 -~~~~v~~~~~~~~~-~l~~-~~~dg~i~i~d~~~~~~------~~~~-~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~ 263 (368)
+...+.+++|+|++ ++++ ...++.|.+|++..... .... ............+..++|+|+++++++++ .
T Consensus 152 ~~~~~~~~~~~spdg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~ 231 (361)
T 3scy_A 152 QTMPHLHCVRITPDGKYLLADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDGKFAYLINEI 231 (361)
T ss_dssp CSSCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETT
T ss_pred cCCCcceEEEECCCCCEEEEEeCCCCEEEEEEEcCCCCcccccceeecccccceecCCCCCCeEEEEcCCCCEEEEEcCC
Confidence 12345789999999 4544 44589999999875431 0000 00112223445678999999999887766 6
Q ss_pred CCcEEEEeCCCccccc-eeeecc-----ceEEEEEEeCCCEEEEeeC--CCeEEEEecC--CCceeeeEeeeccccCeeE
Q 047325 264 DGLVNFWEREKQLSHG-GVLKGH-----KLAVLCLAAAGKLVFSGSA--DKTICVWRRD--GAIHTCLSVLTGHTGPVKC 333 (368)
Q Consensus 264 dg~i~i~d~~~~~~~~-~~~~~~-----~~~~~~~~~~~~~l~~~~~--dg~i~iw~~~--~~~~~~~~~~~~h~~~v~~ 333 (368)
++.|.+||+.++.... ...... ...-++++||+++|+++.. ++.|.+|+++ ++....+..+.. ...+.+
T Consensus 232 ~~~v~v~~~~~g~~~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~~~~g~~~~~~~~~~-g~~~~~ 310 (361)
T 3scy_A 232 GGTVIAFRYADGMLDEIQTVAADTVNAQGSGDIHLSPDGKYLYASNRLKADGVAIFKVDETNGTLTKVGYQLT-GIHPRN 310 (361)
T ss_dssp TCEEEEEEEETTEEEEEEEEESCSSCCCCEEEEEECTTSSEEEEEECSSSCEEEEEEECTTTCCEEEEEEEEC-SSCCCE
T ss_pred CCeEEEEEecCCceEEeEEEecCCCCCCCcccEEECCCCCEEEEECCCCCCEEEEEEEcCCCCcEEEeeEecC-CCCCce
Confidence 8999999988543211 111111 1235678899998877665 4899999996 333345555554 567889
Q ss_pred EEEecCCeeeecCC---cceEEEEE
Q 047325 334 LAVEEDRDSSSSTS---SCAQRWIV 355 (368)
Q Consensus 334 l~~~~~~~~~~~~~---~~~~~w~l 355 (368)
++|+|+|+++++++ +.+.+|.+
T Consensus 311 ~~~spdg~~l~~~~~~~~~v~v~~~ 335 (361)
T 3scy_A 311 FIITPNGKYLLVACRDTNVIQIFER 335 (361)
T ss_dssp EEECTTSCEEEEEETTTTEEEEEEE
T ss_pred EEECCCCCEEEEEECCCCCEEEEEE
Confidence 99999999766543 33455444
No 155
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=99.86 E-value=1e-18 Score=147.17 Aligned_cols=254 Identities=13% Similarity=0.140 Sum_probs=160.5
Q ss_pred ccCcCCcEEEEEecCC-EEEEccC---CCcEEEEcCCcc----eecccCCCCCeeEEEEe--CCEEEEEe-CCCeEEEEe
Q 047325 40 LVREEGHIYSLAASKD-LLYTGSD---SKNIRVWKNLKE----FCGFKASSGLVKAIVIS--GEKIFTGH-QDGKIRVWK 108 (368)
Q Consensus 40 ~~~h~~~i~~~~~~~~-~l~s~~~---dg~i~iw~~~~~----~~~~~~~~~~v~~~~~~--~~~l~s~~-~dg~i~vw~ 108 (368)
...+...+..++|+++ .|++++. ++.|++|++... +..+..+...+..++|+ +++|++++ .++.|.+|+
T Consensus 35 ~~~~~~~p~~~a~spdg~l~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~p~~~a~spdg~~l~~~~~~~~~v~v~~ 114 (347)
T 3hfq_A 35 LLAATQNPTYLALSAKDCLYSVDKEDDEGGIAAWQIDGQTAHKLNTVVAPGTPPAYVAVDEARQLVYSANYHKGTAEVMK 114 (347)
T ss_dssp EEEECSCCCCEEECTTCEEEEEEEETTEEEEEEEEEETTEEEEEEEEEEESCCCSEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred eeeccCCcceEEEccCCeEEEEEecCCCceEEEEEecCCcEEEeeeeecCCCCCEEEEECCCCCEEEEEeCCCCEEEEEE
Confidence 3445566777888765 3554443 689999998532 22334567788889988 77888887 789999999
Q ss_pred ecCCCccccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcCCCCEEEEEeCCCcEEEEEcc-CCe
Q 047325 109 ISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCGLLYTASWDRTFKVWRIS-DSK 187 (368)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~-~~~ 187 (368)
+........... .......+. ...+...+.+++|+|+++++++...++.|.+||+. +++
T Consensus 115 ~~~~g~~~~~~~--------~~~~~~~p~------------~~~~~~~~~~~~~spdg~l~v~~~~~~~v~~~~~~~~g~ 174 (347)
T 3hfq_A 115 IAADGALTLTDT--------VQHSGHGPR------------PEQDGSHIHYTDLTPDNRLAVIDLGSDKVYVYNVSDAGQ 174 (347)
T ss_dssp ECTTSCEEEEEE--------EECCCCCSS------------TTCSSCCEEEEEECTTSCEEEEETTTTEEEEEEECTTSC
T ss_pred eCCCCCeeecce--------eecCCCCCC------------ccccCCCceEEEECCCCcEEEEeCCCCEEEEEEECCCCc
Confidence 964321110000 000000000 00133458899999999966666668899999998 554
Q ss_pred EEE--EeecC-CCceEEEEeCCCC-eEEE-EcCCCeEEEEEcCCCCCCcccccceeeccc------cccEEEEEEcCCCC
Q 047325 188 CLE--SVSAH-DDAVNSVVSSSEG-LIFT-GSADGTVKVWKREQHGKGTKHSLAQTLLKQ------ECAVTALVVSSSRS 256 (368)
Q Consensus 188 ~~~--~~~~~-~~~v~~~~~~~~~-~l~~-~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~------~~~i~~~~~~~~~~ 256 (368)
... .+..+ ...+..++|+|+| ++++ ...++.|.+|+++.... ........... ...+..++|+|+++
T Consensus 175 ~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g--~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~ 252 (347)
T 3hfq_A 175 LSEQSVLTMEAGFGPRHLVFSPDGQYAFLAGELSSQIASLKYDTQTG--AFTQLGIVKTIPADYTAHNGAAAIRLSHDGH 252 (347)
T ss_dssp EEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEETTTT--EEEEEEEEESSCTTCCSCCEEEEEEECTTSC
T ss_pred EEEeeeEEcCCCCCCceEEECCCCCEEEEEeCCCCEEEEEEecCCCC--ceEEeeeeeecCCCCCCCCcceeEEECCCCC
Confidence 332 22222 3367889999999 4544 56789999999875211 11111122111 14588999999999
Q ss_pred EEE-EecCCCcEEEEeCCCcc--ccceeeecc--ceEEEEEEeCCCEEEEeeC-CCeEEEEecCC
Q 047325 257 IVY-CGSSDGLVNFWEREKQL--SHGGVLKGH--KLAVLCLAAAGKLVFSGSA-DKTICVWRRDG 315 (368)
Q Consensus 257 ~l~-~~~~dg~i~i~d~~~~~--~~~~~~~~~--~~~~~~~~~~~~~l~~~~~-dg~i~iw~~~~ 315 (368)
+|+ +...++.|.+|++.... ........+ ...-++++|++++|++++. ++.|.+|+++.
T Consensus 253 ~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~d~ 317 (347)
T 3hfq_A 253 FLYVSNRGYNTLAVFAVTADGHLTLIQQISTEGDFPRDFDLDPTEAFVVVVNQNTDNATLYARDL 317 (347)
T ss_dssp EEEEEEETTTEEEEEEECGGGCEEEEEEEECSSSCCCEEEECTTSSEEEEEETTTTEEEEEEECT
T ss_pred EEEEEeCCCCEEEEEEECCCCcEEEeEEEecCCCCcCeEEECCCCCEEEEEEcCCCcEEEEEEeC
Confidence 874 55568999999987321 111222222 2344778899998888775 48999996654
No 156
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=99.86 E-value=7.2e-20 Score=154.32 Aligned_cols=239 Identities=8% Similarity=0.116 Sum_probs=160.1
Q ss_pred CCEEEEccCCCcEEEEcCCcc--eecccCCC-CCeeEEEEe--CCEEE-EEeCCCeEEEEeecCCCccccccCCccccce
Q 047325 54 KDLLYTGSDSKNIRVWKNLKE--FCGFKASS-GLVKAIVIS--GEKIF-TGHQDGKIRVWKISPKNQSVHKRAGTLPTLK 127 (368)
Q Consensus 54 ~~~l~s~~~dg~i~iw~~~~~--~~~~~~~~-~~v~~~~~~--~~~l~-s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~ 127 (368)
+.++++++.+++|++||..+. ...+..+. ..+..++++ +++++ ++..++.|.+||+.+++..........+.
T Consensus 11 ~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~~~~~~~~~~~~~-- 88 (349)
T 1jmx_B 11 HEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLSSVPG-- 88 (349)
T ss_dssp CEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEESCCSTT--
T ss_pred CEEEEEeCCCCeEEEEECCCCcEEEEEecCCCCCCceeEECCCCCEEEEEeCCCCcEEEEeCCCCcEEEEEEcccccc--
Confidence 448899999999999998753 23333332 256788887 66554 55578999999998775432221110000
Q ss_pred eeeeccCCCCceeEecccceeeeeecCCCEeEEEEcCCCCEEEEEeCC------------CcEEEEEccCCeE---EEEe
Q 047325 128 DIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCGLLYTASWD------------RTFKVWRISDSKC---LESV 192 (368)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d------------~~i~iwd~~~~~~---~~~~ 192 (368)
.....+..++|+|+++++++++.+ +.|.+||+.+++. +..+
T Consensus 89 ------------------------~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~ 144 (349)
T 1jmx_B 89 ------------------------EVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTF 144 (349)
T ss_dssp ------------------------EEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEE
T ss_pred ------------------------cccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCccccceeeec
Confidence 012336789999999999998865 8999999988543 3344
Q ss_pred ecCCCceEEEEeCCCCeEEEEcCCCeEEEEEcCCCCCCcccccce-------------------------e---------
Q 047325 193 SAHDDAVNSVVSSSEGLIFTGSADGTVKVWKREQHGKGTKHSLAQ-------------------------T--------- 238 (368)
Q Consensus 193 ~~~~~~v~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~-------------------------~--------- 238 (368)
. +...+.+++|+|++.+++++. .|.+||+............. .
T Consensus 145 ~-~~~~~~~~~~s~dg~l~~~~~--~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 221 (349)
T 1jmx_B 145 P-MPRQVYLMRAADDGSLYVAGP--DIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKD 221 (349)
T ss_dssp E-CCSSCCCEEECTTSCEEEESS--SEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC--
T ss_pred c-CCCcccceeECCCCcEEEccC--cEEEEeCCCCceeccccccccCCccccCccceeeecCCCcceeEEeeeeeeecCC
Confidence 3 334688899999996555543 49999987653211000000 0
Q ss_pred ----------------------------eccccccEEEEEEcC-CCCEEEEecCCCcEEEEeCCCccccceeeeccceEE
Q 047325 239 ----------------------------LLKQECAVTALVVSS-SRSIVYCGSSDGLVNFWEREKQLSHGGVLKGHKLAV 289 (368)
Q Consensus 239 ----------------------------~~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~ 289 (368)
.......+..++++| ++++++++ ++.|.+||+++++.......++....
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dg~~l~~~--~~~v~~~d~~~~~~~~~~~~~~~~~~ 299 (349)
T 1jmx_B 222 DKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGV--LNRLAKYDLKQRKLIKAANLDHTYYC 299 (349)
T ss_dssp -----CCCEEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEE--ESEEEEEETTTTEEEEEEECSSCCCE
T ss_pred CcCCccccccceeEEEEeccCCcEEecccccCCCcceeeEecCCCCCEEEEE--cCeEEEEECccCeEEEEEcCCCCccc
Confidence 000112456778889 99999988 88999999998766544444445555
Q ss_pred EEEEeCCCEEEEeeCCCeEEEEecCCCceeeeEeee
Q 047325 290 LCLAAAGKLVFSGSADKTICVWRRDGAIHTCLSVLT 325 (368)
Q Consensus 290 ~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~ 325 (368)
+++++++++|++++.++.|++||+++. +.+..+.
T Consensus 300 ~~~s~dg~~l~~~~~~~~v~v~d~~~~--~~~~~~~ 333 (349)
T 1jmx_B 300 VAFDKKGDKLYLGGTFNDLAVFNPDTL--EKVKNIK 333 (349)
T ss_dssp EEECSSSSCEEEESBSSEEEEEETTTT--EEEEEEE
T ss_pred eEECCCCCEEEEecCCCeEEEEecccc--ceeeeee
Confidence 788889998888888999999998876 4455544
No 157
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=99.85 E-value=9.6e-20 Score=153.55 Aligned_cols=211 Identities=8% Similarity=0.021 Sum_probs=144.5
Q ss_pred CCEEEEEeCCCeEEEEeecCCCccccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcCCCCEEEE
Q 047325 92 GEKIFTGHQDGKIRVWKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCGLLYT 171 (368)
Q Consensus 92 ~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~ 171 (368)
+.++++++.++.|.+||+.+++........ ....+..++|+|+++++++
T Consensus 11 ~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~-------------------------------~~~~~~~~~~s~dg~~~~v 59 (349)
T 1jmx_B 11 HEYMIVTNYPNNLHVVDVASDTVYKSCVMP-------------------------------DKFGPGTAMMAPDNRTAYV 59 (349)
T ss_dssp CEEEEEEETTTEEEEEETTTTEEEEEEECS-------------------------------SCCSSCEEEECTTSSEEEE
T ss_pred CEEEEEeCCCCeEEEEECCCCcEEEEEecC-------------------------------CCCCCceeEECCCCCEEEE
Confidence 567889999999999999877543222110 1124678999999986654
Q ss_pred -EeCCCcEEEEEccCCeEEEEeecCC------CceEEEEeCCCC-eEEEEcCC------------CeEEEEEcCCCCCCc
Q 047325 172 -ASWDRTFKVWRISDSKCLESVSAHD------DAVNSVVSSSEG-LIFTGSAD------------GTVKVWKREQHGKGT 231 (368)
Q Consensus 172 -~~~d~~i~iwd~~~~~~~~~~~~~~------~~v~~~~~~~~~-~l~~~~~d------------g~i~i~d~~~~~~~~ 231 (368)
...++.|.+||+.+++.+..+.... ..+..++++|++ ++++++.+ +.|.+||+..+..
T Consensus 60 ~~~~~~~i~~~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~-- 137 (349)
T 1jmx_B 60 LNNHYGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLE-- 137 (349)
T ss_dssp EETTTTEEEEEETTTTEEEEEEESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGG--
T ss_pred EeCCCCcEEEEeCCCCcEEEEEEcccccccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCccc--
Confidence 4568899999999999887776432 237889999999 77777755 8999999976321
Q ss_pred ccccceeeccccccEEEEEEcCCCCEEEEecCCCcEEEEeCCCccccceeeecc--------------------------
Q 047325 232 KHSLAQTLLKQECAVTALVVSSSRSIVYCGSSDGLVNFWEREKQLSHGGVLKGH-------------------------- 285 (368)
Q Consensus 232 ~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~-------------------------- 285 (368)
........ +...+.+++|+|+++ +++++. .|.+||..+++.......+.
T Consensus 138 -~~~~~~~~-~~~~~~~~~~s~dg~-l~~~~~--~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 212 (349)
T 1jmx_B 138 -AKPVRTFP-MPRQVYLMRAADDGS-LYVAGP--DIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSM 212 (349)
T ss_dssp -BCCSEEEE-CCSSCCCEEECTTSC-EEEESS--SEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEE
T ss_pred -cceeeecc-CCCcccceeECCCCc-EEEccC--cEEEEeCCCCceeccccccccCCccccCccceeeecCCCcceeEEe
Confidence 11122222 333578899999999 555543 49999987654332111110
Q ss_pred -------------------------------------------ceEEEEEEe-CCCEEEEeeCCCeEEEEecCCCceeee
Q 047325 286 -------------------------------------------KLAVLCLAA-AGKLVFSGSADKTICVWRRDGAIHTCL 321 (368)
Q Consensus 286 -------------------------------------------~~~~~~~~~-~~~~l~~~~~dg~i~iw~~~~~~~~~~ 321 (368)
.....+++| ++++++++ ++.|.+||+.+. +.+
T Consensus 213 ~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dg~~l~~~--~~~v~~~d~~~~--~~~ 288 (349)
T 1jmx_B 213 LYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGV--LNRLAKYDLKQR--KLI 288 (349)
T ss_dssp EEEEEEC-------CCCEEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEE--ESEEEEEETTTT--EEE
T ss_pred eeeeeecCCCcCCccccccceeEEEEeccCCcEEecccccCCCcceeeEecCCCCCEEEEE--cCeEEEEECccC--eEE
Confidence 011234557 89999888 889999999876 444
Q ss_pred EeeeccccCeeEEEEecCCeeeec
Q 047325 322 SVLTGHTGPVKCLAVEEDRDSSSS 345 (368)
Q Consensus 322 ~~~~~h~~~v~~l~~~~~~~~~~~ 345 (368)
..+. ....+.+++|+|++..+++
T Consensus 289 ~~~~-~~~~~~~~~~s~dg~~l~~ 311 (349)
T 1jmx_B 289 KAAN-LDHTYYCVAFDKKGDKLYL 311 (349)
T ss_dssp EEEE-CSSCCCEEEECSSSSCEEE
T ss_pred EEEc-CCCCccceEECCCCCEEEE
Confidence 5554 3345789999999985543
No 158
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=99.84 E-value=2.9e-20 Score=167.69 Aligned_cols=215 Identities=8% Similarity=0.048 Sum_probs=146.9
Q ss_pred CCCCeeEEEEe--CCEEEEEeC-CCeEEEEeecCCCccccccCCccccceeeeeccCCCCceeEecccceeeeeecC-CC
Q 047325 81 SSGLVKAIVIS--GEKIFTGHQ-DGKIRVWKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHS-DA 156 (368)
Q Consensus 81 ~~~~v~~~~~~--~~~l~s~~~-dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 156 (368)
+..+|.+++|+ |++|++++. ||+++||++++++..... .+. ..
T Consensus 20 ~~~~~~~~~~~~DG~~la~~s~~~g~~~lw~~~~g~~~~lt---------------------------------~~~~~~ 66 (582)
T 3o4h_A 20 IAVEKYSLQGVVDGDKLLVVGFSEGSVNAYLYDGGETVKLN---------------------------------REPINS 66 (582)
T ss_dssp HHSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTEEEECC---------------------------------SSCCSE
T ss_pred hccchheeecCCCCCeEEEEEccCCceeEEEEcCCCcEeee---------------------------------cccccc
Confidence 35579999887 889998887 999999998655432211 133 57
Q ss_pred EeEEEEcCCCCEEEEEeC---CCcEEEEEccC---CeEEEEeecCCCceEEEEeCCCC--eEEEEcCCCeEEEEEcCCCC
Q 047325 157 VSCMSLDQDCGLLYTASW---DRTFKVWRISD---SKCLESVSAHDDAVNSVVSSSEG--LIFTGSADGTVKVWKREQHG 228 (368)
Q Consensus 157 v~~~~~~~~~~~l~~~~~---d~~i~iwd~~~---~~~~~~~~~~~~~v~~~~~~~~~--~l~~~~~dg~i~i~d~~~~~ 228 (368)
+..+.|+|| +.+++++. +....+|.+.. +... .+.... .+...+|+|++ .+++.+.++.+.+||+..+.
T Consensus 67 ~~~~~~spd-~~l~~~~~~~g~~~~~l~~~~~~~~g~~~-~l~~~~-~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~g~ 143 (582)
T 3o4h_A 67 VLDPHYGVG-RVILVRDVSKGAEQHALFKVNTSRPGEEQ-RLEAVK-PMRILSGVDTGEAVVFTGATEDRVALYALDGGG 143 (582)
T ss_dssp ECEECTTCS-EEEEEEECSTTSCCEEEEEEETTSTTCCE-ECTTSC-SBEEEEEEECSSCEEEEEECSSCEEEEEEETTE
T ss_pred cccccCCCC-eEEEEeccCCCCcceEEEEEeccCCCccc-cccCCC-CceeeeeCCCCCeEEEEecCCCCceEEEccCCc
Confidence 899999999 77777765 45566665533 2222 333222 23355667666 44444455556699997652
Q ss_pred CCcccccceeeccccccEEEEEEcCCCCEEEEecCC----CcEEEEeCCCccccceeeeccceEE--EEEEeCCCEEEEe
Q 047325 229 KGTKHSLAQTLLKQECAVTALVVSSSRSIVYCGSSD----GLVNFWEREKQLSHGGVLKGHKLAV--LCLAAAGKLVFSG 302 (368)
Q Consensus 229 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d----g~i~i~d~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~ 302 (368)
...+..+.. .+++|+|||++|++++.+ +.|++||+.+++.. .+..|...+ .+++|||+.|+++
T Consensus 144 -------~~~l~~~~~--~~~~~spDG~~la~~~~~~~~~~~i~~~d~~~g~~~--~l~~~~~~~~~~~~SpDG~~l~~~ 212 (582)
T 3o4h_A 144 -------LRELARLPG--FGFVSDIRGDLIAGLGFFGGGRVSLFTSNLSSGGLR--VFDSGEGSFSSASISPGMKVTAGL 212 (582)
T ss_dssp -------EEEEEEESS--CEEEEEEETTEEEEEEEEETTEEEEEEEETTTCCCE--EECCSSCEEEEEEECTTSCEEEEE
T ss_pred -------EEEeecCCC--ceEEECCCCCEEEEEEEcCCCCeEEEEEcCCCCCce--EeecCCCccccceECCCCCEEEEc
Confidence 122222222 789999999999988777 78999999876543 445555444 6778899999988
Q ss_pred eCCC--eEEEEecCCCceeeeEeeeccccCeeEEE--------EecCCeeeec
Q 047325 303 SADK--TICVWRRDGAIHTCLSVLTGHTGPVKCLA--------VEEDRDSSSS 345 (368)
Q Consensus 303 ~~dg--~i~iw~~~~~~~~~~~~~~~h~~~v~~l~--------~~~~~~~~~~ 345 (368)
..++ .|++||++++. .. .+.+|...+..++ |+|||.++++
T Consensus 213 ~~~~~~~i~~~d~~~~~--~~-~~~~~~~~~~~~~~~~~~~~~~spdg~~~~~ 262 (582)
T 3o4h_A 213 ETAREARLVTVDPRDGS--VE-DLELPSKDFSSYRPTAITWLGYLPDGRLAVV 262 (582)
T ss_dssp ECSSCEEEEEECTTTCC--EE-ECCCSCSHHHHHCCSEEEEEEECTTSCEEEE
T ss_pred cCCCeeEEEEEcCCCCc--EE-EccCCCcChhhhhhccccceeEcCCCcEEEE
Confidence 8888 89999988763 33 5667777777777 9999974333
No 159
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=99.84 E-value=3.1e-18 Score=146.56 Aligned_cols=271 Identities=7% Similarity=-0.002 Sum_probs=172.9
Q ss_pred CCCceeeeccCcCCcEEE-----EEec--CCEEEEccC-CCc--EEEEcCCcc--eecccCCCCCeeEEEEe--CCEEEE
Q 047325 32 PQNGLIGSLVREEGHIYS-----LAAS--KDLLYTGSD-SKN--IRVWKNLKE--FCGFKASSGLVKAIVIS--GEKIFT 97 (368)
Q Consensus 32 ~~~~~~~~~~~h~~~i~~-----~~~~--~~~l~s~~~-dg~--i~iw~~~~~--~~~~~~~~~~v~~~~~~--~~~l~s 97 (368)
..+..+..+..|.+.... .+|+ ++.|+.++. +|. |.+||+... ......+...+..+.|+ ++.|+.
T Consensus 18 ~~g~~~~~lt~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~spdg~~l~~ 97 (388)
T 3pe7_A 18 STGAQVTRLTPPDVTCHRNYFYQKCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVATQLTEGRGDNTFGGFLSPDDDALFY 97 (388)
T ss_dssp TTCCEEEECSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTCEEEECCCSSCBCSSSCEECTTSSEEEE
T ss_pred CCCcceEEecCCcccccchhhcCccCCCCCCEEEEEEcCCCCceEEEEeCCCCceEEeeeCCCCCccceEEcCCCCEEEE
Confidence 345556677777776665 5666 447777766 674 777887643 22334454455456676 889999
Q ss_pred EeCCCeEEEEeecCCCccccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEE--EEcCCCCEEEEE---
Q 047325 98 GHQDGKIRVWKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCM--SLDQDCGLLYTA--- 172 (368)
Q Consensus 98 ~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~--~~~~~~~~l~~~--- 172 (368)
++.++.|++||+.+++...... .+...+... .++|++.+++..
T Consensus 98 ~~~~~~l~~~d~~~g~~~~~~~--------------------------------~~~~~~~~~~~~~~~dg~~l~~~~~~ 145 (388)
T 3pe7_A 98 VKDGRNLMRVDLATLEENVVYQ--------------------------------VPAEWVGYGTWVANSDCTKLVGIEIR 145 (388)
T ss_dssp EETTTEEEEEETTTCCEEEEEE--------------------------------CCTTEEEEEEEEECTTSSEEEEEEEE
T ss_pred EeCCCeEEEEECCCCcceeeee--------------------------------chhhcccccceeECCCCCeecccccc
Confidence 9999999999999876432211 133333323 347888877643
Q ss_pred -------------------eCCCcEEEEEccCCeEEEEeecCCCceEEEEeCC-CC-eEEEEcCC------CeEEEEEcC
Q 047325 173 -------------------SWDRTFKVWRISDSKCLESVSAHDDAVNSVVSSS-EG-LIFTGSAD------GTVKVWKRE 225 (368)
Q Consensus 173 -------------------~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~-~~-~l~~~~~d------g~i~i~d~~ 225 (368)
..+..|.+||+.+++..... .+...+..+.|+| ++ .|+....+ ..|.++|..
T Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~l~-~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~ 224 (388)
T 3pe7_A 146 REDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTGESTVIL-QENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINED 224 (388)
T ss_dssp GGGCCCCCSHHHHHHHGGGCCCEEEEEEETTTCCEEEEE-EESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETT
T ss_pred CcccccccccchhhhhhccCCcceEEEEECCCCceEEee-cCCccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCC
Confidence 23468999999988755443 4566789999999 88 66555543 378888876
Q ss_pred CCCCCcccccceeecccc--ccEEEEEEcCCCCEEEEecC-CC----cEEEEeCCCccccc-eeeeccceEE-----EEE
Q 047325 226 QHGKGTKHSLAQTLLKQE--CAVTALVVSSSRSIVYCGSS-DG----LVNFWEREKQLSHG-GVLKGHKLAV-----LCL 292 (368)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~--~~i~~~~~~~~~~~l~~~~~-dg----~i~i~d~~~~~~~~-~~~~~~~~~~-----~~~ 292 (368)
... ...+..+. ..+...+|+|+|+.|+..+. ++ .|++||+.+++... ....++.... ..+
T Consensus 225 ~~~-------~~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~ 297 (388)
T 3pe7_A 225 GTN-------MRKVKTHAEGESCTHEFWVPDGSALVYVSYLKGSPDRFIYSADPETLENRQLTSMPACSHLMSNYDGSLM 297 (388)
T ss_dssp SCC-------CEESCCCCTTEEEEEEEECTTSSCEEEEEEETTCCCEEEEEECTTTCCEEEEEEECCEEEEEECTTSSEE
T ss_pred CCc-------eEEeeeCCCCcccccceECCCCCEEEEEecCCCCCcceEEEEecCCCceEEEEcCCCceeeeecCCCCeE
Confidence 431 22222333 35778899999997765433 22 39999998765321 1122211111 268
Q ss_pred EeCCCEEEEe---------eCCCeEEEEecCCCceeeeEeeecccc-----------CeeEEEEecCCeeeec
Q 047325 293 AAAGKLVFSG---------SADKTICVWRRDGAIHTCLSVLTGHTG-----------PVKCLAVEEDRDSSSS 345 (368)
Q Consensus 293 ~~~~~~l~~~---------~~dg~i~iw~~~~~~~~~~~~~~~h~~-----------~v~~l~~~~~~~~~~~ 345 (368)
+|||+.|+.. ..+..|++||++++.. ..+..+.. .+.+++|+|||+.++.
T Consensus 298 spdg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~---~~l~~~~~~~~~~~~~~~~~~~~~~~spDg~~l~~ 367 (388)
T 3pe7_A 298 VGDGSDAPVDVQDDSGYKIENDPFLYVFNMKNGTQ---HRVARHDTSWKVFEGDRQVTHPHPSFTPDDKQILF 367 (388)
T ss_dssp EEEECCC------------CCCCEEEEEETTTTEE---EEEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEE
T ss_pred ccCCCcceeEeeeccccccCCCCEEEEEeccCCce---EEeccccCcccccccccccCCCCccCCCCCCEEEE
Confidence 9999887754 4567899999987633 33444544 5788999999986553
No 160
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=99.83 E-value=7.6e-19 Score=148.97 Aligned_cols=238 Identities=11% Similarity=0.107 Sum_probs=152.8
Q ss_pred CCCeeEEEEe--CCEEEEEeCCCeEEEEeec-CCCccccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEe
Q 047325 82 SGLVKAIVIS--GEKIFTGHQDGKIRVWKIS-PKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVS 158 (368)
Q Consensus 82 ~~~v~~~~~~--~~~l~s~~~dg~i~vw~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 158 (368)
...+..++++ +++|++++.+ .|.+|++. +++....... ..+ +.+.
T Consensus 39 ~~~~~~~a~spdg~~l~~~~~~-~v~~~~~~~~g~~~~~~~~------------------------------~~~-g~~~ 86 (365)
T 1jof_A 39 DEPISWMTFDHERKNIYGAAMK-KWSSFAVKSPTEIVHEASH------------------------------PIG-GHPR 86 (365)
T ss_dssp TCCCSEEEECTTSSEEEEEEBT-EEEEEEEEETTEEEEEEEE------------------------------ECC-SSGG
T ss_pred CCCCcEEEECCCCCEEEEEccc-eEEEEEECCCCCEEEeeEe------------------------------ecC-CCCc
Confidence 3467788887 7789999888 99999997 5432110000 001 1244
Q ss_pred EEEEcCCCCE--EEEEe-------------CCCcEEEEEcc-CCeEEEEee----cCCCceEEEEeCCCC-eEEEEc-CC
Q 047325 159 CMSLDQDCGL--LYTAS-------------WDRTFKVWRIS-DSKCLESVS----AHDDAVNSVVSSSEG-LIFTGS-AD 216 (368)
Q Consensus 159 ~~~~~~~~~~--l~~~~-------------~d~~i~iwd~~-~~~~~~~~~----~~~~~v~~~~~~~~~-~l~~~~-~d 216 (368)
+++|+|++++ ++++. .++.+.+|++. +++....+. .+...+.+++|+|+| +++++. .+
T Consensus 87 ~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~ 166 (365)
T 1jof_A 87 ANDADTNTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLTA 166 (365)
T ss_dssp GGCTTSCCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTT
T ss_pred cEEECCCCCEEEEEEecCCcceeccceeecCCceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCCCEEEEEcCCC
Confidence 5889999984 44543 68999999997 466544443 245678999999999 666654 46
Q ss_pred CeEEEEEcC-CCCCCcccccceeec--cccccEEEEEEcCCCCEEEEecC-CCcEEEEeCC--Ccccc-----ceee---
Q 047325 217 GTVKVWKRE-QHGKGTKHSLAQTLL--KQECAVTALVVSSSRSIVYCGSS-DGLVNFWERE--KQLSH-----GGVL--- 282 (368)
Q Consensus 217 g~i~i~d~~-~~~~~~~~~~~~~~~--~~~~~i~~~~~~~~~~~l~~~~~-dg~i~i~d~~--~~~~~-----~~~~--- 282 (368)
+.|++||+. .+.. ....... .+...+..++|+|++++|++++. ++.|.+|++. +++.. ....
T Consensus 167 ~~v~~~~~~~~g~~----~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~ 242 (365)
T 1jof_A 167 NKLWTHRKLASGEV----ELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPG 242 (365)
T ss_dssp TEEEEEEECTTSCE----EEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTT
T ss_pred CEEEEEEECCCCCE----EEeeeEecCCCCCCCCEeEECCCCCEEEEEECCCCeEEEEEEeCCCCcEEEccceEEcCCCC
Confidence 899999997 3311 1112222 23566899999999999887764 6899999865 33221 0111
Q ss_pred -eccc--------eEEEE-EEeCCCEEEEeeCC-C-----eEEEEecC-CCceeeeE-eeeccccCeeEEEEec---CCe
Q 047325 283 -KGHK--------LAVLC-LAAAGKLVFSGSAD-K-----TICVWRRD-GAIHTCLS-VLTGHTGPVKCLAVEE---DRD 341 (368)
Q Consensus 283 -~~~~--------~~~~~-~~~~~~~l~~~~~d-g-----~i~iw~~~-~~~~~~~~-~~~~h~~~v~~l~~~~---~~~ 341 (368)
.+|. ..-.+ ++|||++|+++..+ + .|.+|+++ ++....+. ....+...+..++|+| +|+
T Consensus 243 ~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~~~~~~~~~~i~v~~~~~~g~~~~~~~~~~~~~~~~~~~a~sp~~~dg~ 322 (365)
T 1jof_A 243 IPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPCPWSDE 322 (365)
T ss_dssp CCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEECTTCTT
T ss_pred cCCcccccccccccccEEEECCCCCEEEEECCCCCCCCCCeEEEEEECCCCCEEEeeeeeecCCCCcccceecCCCcCCC
Confidence 1222 33466 88999988877643 2 89999996 33222222 2334555678899999 898
Q ss_pred eeecCC---cceEEEEE
Q 047325 342 SSSSTS---SCAQRWIV 355 (368)
Q Consensus 342 ~~~~~~---~~~~~w~l 355 (368)
++++++ +.+.+|.+
T Consensus 323 ~l~v~~~~~~~v~v~~~ 339 (365)
T 1jof_A 323 WMAITDDQEGWLEIYRW 339 (365)
T ss_dssp EEEEECSSSCEEEEEEE
T ss_pred EEEEEEcCCCeEEEEEE
Confidence 766553 33455544
No 161
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=99.83 E-value=2.2e-19 Score=166.04 Aligned_cols=271 Identities=6% Similarity=-0.036 Sum_probs=173.2
Q ss_pred EEEecCC-EEEEccCCCcEEEEcCCcce--ecccCCCC---CeeEEEEe--CCEEEEEeC---------CCeEEEEeecC
Q 047325 49 SLAASKD-LLYTGSDSKNIRVWKNLKEF--CGFKASSG---LVKAIVIS--GEKIFTGHQ---------DGKIRVWKISP 111 (368)
Q Consensus 49 ~~~~~~~-~l~s~~~dg~i~iw~~~~~~--~~~~~~~~---~v~~~~~~--~~~l~s~~~---------dg~i~vw~~~~ 111 (368)
+++|+++ .++..+.|++|++||+.... ..+..|.. .+.+++|+ |++|++++. ++.|++||+.+
T Consensus 20 ~~~~s~dg~~~~~~~d~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~~ 99 (719)
T 1z68_A 20 FPNWISGQEYLHQSADNNIVLYNIETGQSYTILSNRTMKSVNASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDLSN 99 (719)
T ss_dssp CCEESSSSEEEEECTTSCEEEEESSSCCEEEEECHHHHHTTTCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTT
T ss_pred ccEECCCCeEEEEcCCCCEEEEEcCCCcEEEEEccccccccceeeEEECCCCCeEEEEecCceeEEeecceEEEEEECCC
Confidence 4566654 34444569999999987532 22333322 48889998 888988876 78999999988
Q ss_pred CCccccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcCCCCEEEEEeCCCcEEEEEccCCeEEEE
Q 047325 112 KNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCGLLYTASWDRTFKVWRISDSKCLES 191 (368)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~ 191 (368)
++...... ....+..++|+|||+.|+.+. ++.|++||+.+++....
T Consensus 100 g~~~~~~~---------------------------------l~~~~~~~~~SPDG~~la~~~-~~~i~~~~~~~g~~~~l 145 (719)
T 1z68_A 100 GEFVRGNE---------------------------------LPRPIQYLCWSPVGSKLAYVY-QNNIYLKQRPGDPPFQI 145 (719)
T ss_dssp TEECCSSC---------------------------------CCSSBCCEEECSSTTCEEEEE-TTEEEEESSTTSCCEEC
T ss_pred Ccccccee---------------------------------cCcccccceECCCCCEEEEEE-CCeEEEEeCCCCCcEEE
Confidence 76411011 123577899999999999886 78999999988876543
Q ss_pred e-ecCCCce-----------------EEEEeCCCC-eEEEEcCCC----------------------------------e
Q 047325 192 V-SAHDDAV-----------------NSVVSSSEG-LIFTGSADG----------------------------------T 218 (368)
Q Consensus 192 ~-~~~~~~v-----------------~~~~~~~~~-~l~~~~~dg----------------------------------~ 218 (368)
. .++...+ .+++|+||| .|++++.|. .
T Consensus 146 ~~~~~~~~v~~g~~~~v~~ee~~~~~~~~~wSPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~ 225 (719)
T 1z68_A 146 TFNGRENKIFNGIPDWVYEEEMLATKYALWWSPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVR 225 (719)
T ss_dssp CCCCBTTTEEESSCCHHHHHHTTCSSCCEEECTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEE
T ss_pred ecCCCcCCeEcccccceeeeecccCcccEEECCCCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeE
Confidence 3 2222222 489999999 787776542 7
Q ss_pred EEEEEcCCCCCC--cccccceeeccccccEEEEEEcCCCCEEEEecCC----CcEEEEe----CCCccccceee---ecc
Q 047325 219 VKVWKREQHGKG--TKHSLAQTLLKQECAVTALVVSSSRSIVYCGSSD----GLVNFWE----REKQLSHGGVL---KGH 285 (368)
Q Consensus 219 i~i~d~~~~~~~--~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d----g~i~i~d----~~~~~~~~~~~---~~~ 285 (368)
|++||+..+... ........+..+...+..++|+||++++++.... ..|.+|| ..++....... ..|
T Consensus 226 l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SpD~~~~~~~~~~~~~~~~l~~~d~~~~~~~g~~~~~~~~~~~~~ 305 (719)
T 1z68_A 226 IFIIDTTYPAYVGPQEVPVPAMIASSDYYFSWLTWVTDERVCLQWLKRVQNVSVLSICDFREDWQTWDCPKTQEHIEESR 305 (719)
T ss_dssp EEEEESSCHHHHCCEECCCCHHHHTSCEEEEEEEESSSSEEEEEEEESSTTEEEEEEEEECSSSSSEECCGGGEEEEECS
T ss_pred EEEEECCCCCccceeEccCCccCCCCcceEEEeEEeCCCeEEEEEeccccCeEEEEEEcccCCCCCCceEEEEecccccC
Confidence 889998754210 0000001234577889999999998777764332 2488899 77655442221 334
Q ss_pred ceE-------EEEEEeCCCEEEE--eeCCCe--EEEEecCCCceeeeEeeeccccCeeEEEEecCCeeeecCC-------
Q 047325 286 KLA-------VLCLAAAGKLVFS--GSADKT--ICVWRRDGAIHTCLSVLTGHTGPVKCLAVEEDRDSSSSTS------- 347 (368)
Q Consensus 286 ~~~-------~~~~~~~~~~l~~--~~~dg~--i~iw~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~------- 347 (368)
... ...++|||+.|+. +..+|. |.+|++.+.. ...+..+...+..+.++ ++..++...
T Consensus 306 ~~~~~~~~~~~~~~spdg~~l~~~~~~~~g~~~l~~~~~~~~~---~~~lt~~~~~v~~~~~~-d~~~i~~~~~~~~~~~ 381 (719)
T 1z68_A 306 TGWAGGFFVSTPVFSYDAISYYKIFSDKDGYKHIHYIKDTVEN---AIQITSGKWEAINIFRV-TQDSLFYSSNEFEEYP 381 (719)
T ss_dssp SSCSSSSSCCCCEECTTSSCEEEEEECTTSCEEEEEESSCSTT---CEECSCSSSCEEEEEEE-CSSEEEEEESCGGGCT
T ss_pred CceEccccCCccEECCCCCeEEEEEEccCCceEEEEEECCCCc---eEecccCceEEEEEEEE-eCCEEEEEEecCCCCC
Confidence 332 3568899985543 445664 6666665542 34455566668888777 666554332
Q ss_pred cceEEEEEee
Q 047325 348 SCAQRWIVYS 357 (368)
Q Consensus 348 ~~~~~w~l~s 357 (368)
+..++|.+-.
T Consensus 382 ~~~~l~~~~~ 391 (719)
T 1z68_A 382 GRRNIYRISI 391 (719)
T ss_dssp TCBEEEEEEC
T ss_pred ceEEEEEEeC
Confidence 3467777654
No 162
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=99.81 E-value=1.8e-18 Score=160.00 Aligned_cols=282 Identities=9% Similarity=0.026 Sum_probs=174.8
Q ss_pred cCCCceeeeccCcCC---cEEEEEecCC--EEEEccC---------CCcEEEEcCCcceec-ccCCCCCeeEEEEe--CC
Q 047325 31 LPQNGLIGSLVREEG---HIYSLAASKD--LLYTGSD---------SKNIRVWKNLKEFCG-FKASSGLVKAIVIS--GE 93 (368)
Q Consensus 31 ~~~~~~~~~~~~h~~---~i~~~~~~~~--~l~s~~~---------dg~i~iw~~~~~~~~-~~~~~~~v~~~~~~--~~ 93 (368)
...++....+.+|.. .|.+++|+++ +|++++. |+.|++||+.+.... .......+..++|+ |+
T Consensus 43 ~~~g~~~~~~~~~~~~~~~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~~g~~~~~~~l~~~~~~~~~SPDG~ 122 (719)
T 1z68_A 43 IETGQSYTILSNRTMKSVNASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDLSNGEFVRGNELPRPIQYLCWSPVGS 122 (719)
T ss_dssp SSSCCEEEEECHHHHHTTTCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECCSSCCCSSBCCEEECSSTT
T ss_pred cCCCcEEEEEccccccccceeeEEECCCCCeEEEEecCceeEEeecceEEEEEECCCCccccceecCcccccceECCCCC
Confidence 344444444444443 3888888765 8887766 789999998755331 01112568888888 77
Q ss_pred EEEEEeCCCeEEEEeecCCCccccccCCccccceeeeeccCCCCceeEecccceeeeeecCCC---------EeEEEEcC
Q 047325 94 KIFTGHQDGKIRVWKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDA---------VSCMSLDQ 164 (368)
Q Consensus 94 ~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------v~~~~~~~ 164 (368)
.|+.+. |+.|++|++.+++.......+. ...++.|+... ..+++|+|
T Consensus 123 ~la~~~-~~~i~~~~~~~g~~~~l~~~~~-----------------------~~~v~~g~~~~v~~ee~~~~~~~~~wSP 178 (719)
T 1z68_A 123 KLAYVY-QNNIYLKQRPGDPPFQITFNGR-----------------------ENKIFNGIPDWVYEEEMLATKYALWWSP 178 (719)
T ss_dssp CEEEEE-TTEEEEESSTTSCCEECCCCCB-----------------------TTTEEESSCCHHHHHHTTCSSCCEEECT
T ss_pred EEEEEE-CCeEEEEeCCCCCcEEEecCCC-----------------------cCCeEcccccceeeeecccCcccEEECC
Confidence 888876 7899999998876432221110 00112223322 25899999
Q ss_pred CCCEEEEEeCCC----------------------------------cEEEEEccCCeEE--------EEeecCCCceEEE
Q 047325 165 DCGLLYTASWDR----------------------------------TFKVWRISDSKCL--------ESVSAHDDAVNSV 202 (368)
Q Consensus 165 ~~~~l~~~~~d~----------------------------------~i~iwd~~~~~~~--------~~~~~~~~~v~~~ 202 (368)
||++|++++.|. .|++||+.+++.. ..+.+|...+..+
T Consensus 179 DG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (719)
T 1z68_A 179 NGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYPAYVGPQEVPVPAMIASSDYYFSWL 258 (719)
T ss_dssp TSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCHHHHCCEECCCCHHHHTSCEEEEEE
T ss_pred CCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCCCCccceeEccCCccCCCCcceEEEe
Confidence 999999987652 7889999887642 1233577889999
Q ss_pred EeCCCC-eEEEEcC--C--CeEEEEE----cCCCCCCcccccceee----ccccccEE-----EEEEcCCCCEEEE--ec
Q 047325 203 VSSSEG-LIFTGSA--D--GTVKVWK----REQHGKGTKHSLAQTL----LKQECAVT-----ALVVSSSRSIVYC--GS 262 (368)
Q Consensus 203 ~~~~~~-~l~~~~~--d--g~i~i~d----~~~~~~~~~~~~~~~~----~~~~~~i~-----~~~~~~~~~~l~~--~~ 262 (368)
+|+||+ .+++... + ..|.+|| ...+.. .... ..+...+. .+.|+|+|+.|+. ..
T Consensus 259 ~~SpD~~~~~~~~~~~~~~~~l~~~d~~~~~~~g~~------~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~ 332 (719)
T 1z68_A 259 TWVTDERVCLQWLKRVQNVSVLSICDFREDWQTWDC------PKTQEHIEESRTGWAGGFFVSTPVFSYDAISYYKIFSD 332 (719)
T ss_dssp EESSSSEEEEEEEESSTTEEEEEEEEECSSSSSEEC------CGGGEEEEECSSSCSSSSSCCCCEECTTSSCEEEEEEC
T ss_pred EEeCCCeEEEEEeccccCeEEEEEEcccCCCCCCce------EEEEecccccCCceEccccCCccEECCCCCeEEEEEEc
Confidence 999999 4444332 2 3488888 554321 1112 24444454 7889999996554 44
Q ss_pred CCC--cEEEEeCCCccccceeeeccceEE--EEEEeCCCEEEEeeCC-----CeEEEEecCCCcee-eeEee----eccc
Q 047325 263 SDG--LVNFWEREKQLSHGGVLKGHKLAV--LCLAAAGKLVFSGSAD-----KTICVWRRDGAIHT-CLSVL----TGHT 328 (368)
Q Consensus 263 ~dg--~i~i~d~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~~~d-----g~i~iw~~~~~~~~-~~~~~----~~h~ 328 (368)
.+| .|.+||+.++.. ..+..+...+ ..+. +++.|+..+.+ +..++|.++..... ....+ .+|.
T Consensus 333 ~~g~~~l~~~~~~~~~~--~~lt~~~~~v~~~~~~-d~~~i~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~l~~~~~~~~ 409 (719)
T 1z68_A 333 KDGYKHIHYIKDTVENA--IQITSGKWEAINIFRV-TQDSLFYSSNEFEEYPGRRNIYRISIGSYPPSKKCVTCHLRKER 409 (719)
T ss_dssp TTSCEEEEEESSCSTTC--EECSCSSSCEEEEEEE-CSSEEEEEESCGGGCTTCBEEEEEECSSSSCCEEESSTTTTTTT
T ss_pred cCCceEEEEEECCCCce--EecccCceEEEEEEEE-eCCEEEEEEecCCCCCceEEEEEEeCCCCCCCceeccCccCCCC
Confidence 555 567777766542 2333333222 2333 77766665554 88999988652111 11222 2366
Q ss_pred cCeeEEEEecCCeeeec
Q 047325 329 GPVKCLAVEEDRDSSSS 345 (368)
Q Consensus 329 ~~v~~l~~~~~~~~~~~ 345 (368)
..+..+.|+|+++.++.
T Consensus 410 ~~~~~~~~s~dg~~l~~ 426 (719)
T 1z68_A 410 CQYYTASFSDYAKYYAL 426 (719)
T ss_dssp BCBEEEEECGGGSSEEE
T ss_pred CceEEEEECCCCCEEEE
Confidence 77889999999987663
No 163
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=99.80 E-value=1.4e-17 Score=152.53 Aligned_cols=284 Identities=11% Similarity=0.028 Sum_probs=180.6
Q ss_pred eeccCcCCcEEEEEecCC--EEEEc--cCCCcEEEEcCC--cceecccCCCCCee---------EEEEe----CCE-EEE
Q 047325 38 GSLVREEGHIYSLAASKD--LLYTG--SDSKNIRVWKNL--KEFCGFKASSGLVK---------AIVIS----GEK-IFT 97 (368)
Q Consensus 38 ~~~~~h~~~i~~~~~~~~--~l~s~--~~dg~i~iw~~~--~~~~~~~~~~~~v~---------~~~~~----~~~-l~s 97 (368)
..+.+|...+..++++++ ++++. +.++...||... .....+..+...+. ...+. |+. |+.
T Consensus 17 ~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~SPDg~~~la~ 96 (662)
T 3azo_A 17 ALVASRSGRPACVGAVGDEVWWVAPRPAEAGRATLVRRRADGAEESALPAPWNVRNRVFEYSGFPWAGVPRPAGGPLLVF 96 (662)
T ss_dssp HHHHHTCSCCEEEEEETTEEEEEEEETTTTTEEEEEEECTTSCEEESSCTTCCBCCCGGGTCCCCEEEECCSSSSCEEEE
T ss_pred HHHhhcCCccceeEEcCCeEEEEecCcccCCcEEEEEECCCCCcceeCCCCccccccccccCCccceeeeecCCCeEEEE
Confidence 346788999999999988 44555 568889999742 33445555655555 45444 777 665
Q ss_pred EeC-CCeEEEEeec--C-CCccccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcCCCCEEEEEe
Q 047325 98 GHQ-DGKIRVWKIS--P-KNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCGLLYTAS 173 (368)
Q Consensus 98 ~~~-dg~i~vw~~~--~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 173 (368)
++. +..|.++++. . ++......... ..|...+..++|+|||+.|+.++
T Consensus 97 ~~~~~~~l~~~~~~~~g~~~~~~l~~~~~----------------------------~~~~~~~~~~~~spDg~~l~~~~ 148 (662)
T 3azo_A 97 THFGDQRLYAFEPDAPGGAVPRPLTPVSA----------------------------VGGGLRWADPVLLPERGEVWCMA 148 (662)
T ss_dssp EBTTTCCEEEECTTSTTCCCCEECSCCCC----------------------------STTCEEEEEEEEETTTTEEEEEE
T ss_pred EECCCCeEEEEcCCCCCCCCCEeccCCcc----------------------------CCCCccccCcEECCCCCEEEEEE
Confidence 553 4556666654 2 22111110000 00345678899999999999988
Q ss_pred CC----------CcEEEEEccC------CeEEEEee-cCCCceEEEEeCCCC-eEEEEcCC--------CeEEEEEcCCC
Q 047325 174 WD----------RTFKVWRISD------SKCLESVS-AHDDAVNSVVSSSEG-LIFTGSAD--------GTVKVWKREQH 227 (368)
Q Consensus 174 ~d----------~~i~iwd~~~------~~~~~~~~-~~~~~v~~~~~~~~~-~l~~~~~d--------g~i~i~d~~~~ 227 (368)
.+ ..|.+||+.+ ++.. .+. .+...+..++|+||| .|+.++.+ ..|++||+...
T Consensus 149 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~-~l~~~~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~ 227 (662)
T 3azo_A 149 EEFTGEGPSDVRRFLAAVPLDGSAAADRSAVR-ELSDDAHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTED 227 (662)
T ss_dssp EEECSSSTTCEEEEEEEEETTSTTTTCGGGSE-ESSCSCSSEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTT
T ss_pred ecccCCCCCCceeEEEEEECCCCccccCCcee-EEEecCCCcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCC
Confidence 76 5899999987 5543 444 555678889999999 77766644 47999999732
Q ss_pred CCCcccccceeeccccccEEEEEEcCCCCEEEEecCCC--cEEEEeCCCccccceeeeccc----------eEEEEEEeC
Q 047325 228 GKGTKHSLAQTLLKQECAVTALVVSSSRSIVYCGSSDG--LVNFWEREKQLSHGGVLKGHK----------LAVLCLAAA 295 (368)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg--~i~i~d~~~~~~~~~~~~~~~----------~~~~~~~~~ 295 (368)
+. ..........+...+..+.|+|||++++++..++ .|.+||..++... .....+. ....+++++
T Consensus 228 g~--~~~~~~l~~~~~~~~~~~~~spdg~l~~~~~~~~~~~l~~~~~~~~~~~-~l~~~~~~~~~p~w~~~~~~~~~~~~ 304 (662)
T 3azo_A 228 GR--FADTRTLLGGPEEAIAQAEWAPDGSLIVATDRTGWWNLHRVDPATGAAT-QLCRREEEFAGPLWTPGMRWFAPLAN 304 (662)
T ss_dssp SC--EEEEEEEEEETTBCEEEEEECTTSCEEEEECTTSSCEEEEECTTTCCEE-ESSCCSSBSSCCCCSTTCCSEEECTT
T ss_pred Cc--ccccEEeCCCCCceEcceEECCCCeEEEEECCCCCeEEEEEECCCCcee-ecccccccccCccccccCceEeEeCC
Confidence 10 0012222334467899999999999888888888 6666776544322 1111111 123556678
Q ss_pred CCEEEEeeCCCeEEEEecCCCceeeeEeeeccccCeeEE-EEecCCeeeecCC--cceEEEEE
Q 047325 296 GKLVFSGSADKTICVWRRDGAIHTCLSVLTGHTGPVKCL-AVEEDRDSSSSTS--SCAQRWIV 355 (368)
Q Consensus 296 ~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~l-~~~~~~~~~~~~~--~~~~~w~l 355 (368)
++++++++. +.+++|.++..... +..+..|...+..+ +++++...+++++ ....+|.+
T Consensus 305 ~~~~~~~~~-~~~~l~~~d~~~~~-~~~l~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~i~~~ 365 (662)
T 3azo_A 305 GLIAVVHGK-GAAVLGILDPESGE-LVDAAGPWTEWAATLTVSGTRAVGVAASPRTAYEVVEL 365 (662)
T ss_dssp SCEEEEEBS-SSCEEEEEETTTTE-EEECCSSCCEEEEEEEEETTEEEEEEEETTEEEEEEEE
T ss_pred CEEEEEEEc-CccEEEEEECCCCc-EEEecCCCCeEEEEEecCCCEEEEEEcCCCCCCEEEEE
Confidence 999999998 99999955432223 56667777778877 6655554444333 23456654
No 164
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=99.79 E-value=1.1e-16 Score=134.09 Aligned_cols=257 Identities=9% Similarity=0.088 Sum_probs=168.5
Q ss_pred CcEEEEEecCC--EEEEccCCCcEEEEcCCcceecccCCCCCeeEEEEe--CCEEEEEeCCCeEEEEeecCCCccccccC
Q 047325 45 GHIYSLAASKD--LLYTGSDSKNIRVWKNLKEFCGFKASSGLVKAIVIS--GEKIFTGHQDGKIRVWKISPKNQSVHKRA 120 (368)
Q Consensus 45 ~~i~~~~~~~~--~l~s~~~dg~i~iw~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~vw~~~~~~~~~~~~~ 120 (368)
..|.+++|+++ .++..+.++.++.| ..+....+..+...+.+++|+ ++.++++..++.|.+||.++++.....
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~~~~~~~~-- 82 (333)
T 2dg1_A 6 QDLPTLFYSGKSNSAVPIISESELQTI-TAEPWLEISKKGLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPF-- 82 (333)
T ss_dssp CCCCBCCSCGGGGCSSCCCCGGGSCEE-ECEEEEEEESSCCCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEE--
T ss_pred cccceeeecCCccceeEEeecccCccc-ccceeEEEeccCccccCcEECCCCCEEEEECCCCEEEEEeCCCCcEEEEe--
Confidence 34566777655 55566778889999 344455566666778899998 666667888999999998776532111
Q ss_pred CccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcCCCCEEEEEeCC----CcEEEEEccCCeEEEEee--c
Q 047325 121 GTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCGLLYTASWD----RTFKVWRISDSKCLESVS--A 194 (368)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d----~~i~iwd~~~~~~~~~~~--~ 194 (368)
..+...+.+++++++++++++...+ +.|.+||..+++....+. .
T Consensus 83 ------------------------------~~~~~~~~~i~~~~dg~l~v~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~ 132 (333)
T 2dg1_A 83 ------------------------------VSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNLQDIIEDLS 132 (333)
T ss_dssp ------------------------------ECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSCEEEECSSS
T ss_pred ------------------------------eCCCCCcceEEECCCCcEEEEeCCCCCCCceEEEEeCCCCEEEEEEccCc
Confidence 0145678999999999887777666 689999998776543332 2
Q ss_pred CCCceEEEEeCCCCeEEEEcC-------CCeEEEEEcCCCCCCcccccceeeccccccEEEEEEcCCCCEEE-EecCCCc
Q 047325 195 HDDAVNSVVSSSEGLIFTGSA-------DGTVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSSSRSIVY-CGSSDGL 266 (368)
Q Consensus 195 ~~~~v~~~~~~~~~~l~~~~~-------dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~-~~~~dg~ 266 (368)
+...+.++++.|++.++.++. .+.|..+|..... ...+......+..++|+|+++.|+ +...++.
T Consensus 133 ~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~l~~~~~~~~~-------~~~~~~~~~~~~~i~~~~dg~~l~v~~~~~~~ 205 (333)
T 2dg1_A 133 TAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRT-------VTPIIQNISVANGIALSTDEKVLWVTETTANR 205 (333)
T ss_dssp SCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCC-------EEEEEEEESSEEEEEECTTSSEEEEEEGGGTE
T ss_pred cCCcccceEECCCCCEEEEeccccccCCCceEEEEeCCCCE-------EEEeecCCCcccceEECCCCCEEEEEeCCCCe
Confidence 345789999999994444443 2456666654321 112222334578899999998654 4556789
Q ss_pred EEEEeCCC-ccccce-------eeecc-ceEEEEEEeCCCEEEEeeCCCeEEEEecCCCceeeeEeeecccc------Ce
Q 047325 267 VNFWEREK-QLSHGG-------VLKGH-KLAVLCLAAAGKLVFSGSADKTICVWRRDGAIHTCLSVLTGHTG------PV 331 (368)
Q Consensus 267 i~i~d~~~-~~~~~~-------~~~~~-~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~------~v 331 (368)
|.+||+++ +..... ...++ ...-++++++++++++...++.|.+||.+. ..+..+..+.. .+
T Consensus 206 i~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~v~~~d~~g---~~~~~~~~~~~~~g~~~~~ 282 (333)
T 2dg1_A 206 LHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAMYGQGRVLVFNKRG---YPIGQILIPGRDEGHMLRS 282 (333)
T ss_dssp EEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCEEEEEETTTEEEEECTTS---CEEEEEECTTGGGTCSCBC
T ss_pred EEEEEecCCCcCcccccceEEEecCCCCCCCceEECCCCCEEEEEcCCCEEEEECCCC---CEEEEEEcCCCccccccCc
Confidence 99999863 221110 01111 122256667788888877889999998743 33444443332 68
Q ss_pred eEEEEecCCeeee
Q 047325 332 KCLAVEEDRDSSS 344 (368)
Q Consensus 332 ~~l~~~~~~~~~~ 344 (368)
.+++|+|++..+.
T Consensus 283 ~~~~~~~dg~~L~ 295 (333)
T 2dg1_A 283 THPQFIPGTNQLI 295 (333)
T ss_dssp CEEEECTTSCEEE
T ss_pred ceEEECCCCCEEE
Confidence 9999999975443
No 165
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=99.79 E-value=9.8e-16 Score=125.28 Aligned_cols=232 Identities=12% Similarity=0.169 Sum_probs=159.8
Q ss_pred cCcCCcEEEEEecC--CEEEEccCCCcEEEEcCCcce-eccc------CCCCCeeEEEEe--CCEEEEEeC--CCeEEEE
Q 047325 41 VREEGHIYSLAASK--DLLYTGSDSKNIRVWKNLKEF-CGFK------ASSGLVKAIVIS--GEKIFTGHQ--DGKIRVW 107 (368)
Q Consensus 41 ~~h~~~i~~~~~~~--~~l~s~~~dg~i~iw~~~~~~-~~~~------~~~~~v~~~~~~--~~~l~s~~~--dg~i~vw 107 (368)
.+|-..+.++++++ +++++...++.|++||..... ..+. .+...+..++++ +..|+.+.. ++.|.+|
T Consensus 26 ~g~~~~p~~v~~~~~g~l~v~~~~~~~i~~~d~~g~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~~~~~i~~~ 105 (286)
T 1q7f_A 26 EGQFTEPSGVAVNAQNDIIVADTNNHRIQIFDKEGRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIY 105 (286)
T ss_dssp TTCBSCEEEEEECTTCCEEEEEGGGTEEEEECTTSCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEE
T ss_pred CCccCCCceEEECCCCCEEEEECCCCEEEEECCCCcEEEEecccCCCcccccCceEEEEEcCCCeEEEEcCCCCCEEEEE
Confidence 34556788999875 477777889999999976432 2222 344578899994 455555553 8899999
Q ss_pred eecCCCccccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcCCCCEEEEEeCCCcEEEEEccCCe
Q 047325 108 KISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCGLLYTASWDRTFKVWRISDSK 187 (368)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~ 187 (368)
|. +++....... .+...+.+++++++++++++...++.|.+||. .++
T Consensus 106 d~-~g~~~~~~~~-------------------------------~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~ 152 (286)
T 1q7f_A 106 NQ-YGQFVRKFGA-------------------------------TILQHPRGVTVDNKGRIIVVECKVMRVIIFDQ-NGN 152 (286)
T ss_dssp CT-TSCEEEEECT-------------------------------TTCSCEEEEEECTTSCEEEEETTTTEEEEECT-TSC
T ss_pred CC-CCcEEEEecC-------------------------------ccCCCceEEEEeCCCCEEEEECCCCEEEEEcC-CCC
Confidence 93 3332211110 03356789999999988877777889999996 466
Q ss_pred EEEEee--cCCCceEEEEeCCCC-eEEEEcCCCeEEEEEcCCCCCCcccccceeecc--ccccEEEEEEcCCCCEEEEec
Q 047325 188 CLESVS--AHDDAVNSVVSSSEG-LIFTGSADGTVKVWKREQHGKGTKHSLAQTLLK--QECAVTALVVSSSRSIVYCGS 262 (368)
Q Consensus 188 ~~~~~~--~~~~~v~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~--~~~~i~~~~~~~~~~~l~~~~ 262 (368)
.+..+. .+...+..+++++++ .+++...++.|++||.... ....+.. +...+..++++++++++++..
T Consensus 153 ~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~g~-------~~~~~~~~g~~~~p~~i~~d~~G~l~v~~~ 225 (286)
T 1q7f_A 153 VLHKFGCSKHLEFPNGVVVNDKQEIFISDNRAHCVKVFNYEGQ-------YLRQIGGEGITNYPIGVGINSNGEILIADN 225 (286)
T ss_dssp EEEEEECTTTCSSEEEEEECSSSEEEEEEGGGTEEEEEETTCC-------EEEEESCTTTSCSEEEEEECTTCCEEEEEC
T ss_pred EEEEeCCCCccCCcEEEEECCCCCEEEEECCCCEEEEEcCCCC-------EEEEEccCCccCCCcEEEECCCCCEEEEeC
Confidence 666664 344568999999999 6666677899999997532 2222322 235688999999999888888
Q ss_pred CCC-cEEEEeCCCccccceeeeccc----eEEEEEEeCCCEEEEeeCCCeEEEEecCC
Q 047325 263 SDG-LVNFWEREKQLSHGGVLKGHK----LAVLCLAAAGKLVFSGSADKTICVWRRDG 315 (368)
Q Consensus 263 ~dg-~i~i~d~~~~~~~~~~~~~~~----~~~~~~~~~~~~l~~~~~dg~i~iw~~~~ 315 (368)
.++ .|.+||.... .. ..+..+. ..-++++++++++++ +.|+.|++|++..
T Consensus 226 ~~~~~i~~~~~~g~-~~-~~~~~~~~~~~~~~i~~~~~g~l~vs-~~~~~v~v~~~~~ 280 (286)
T 1q7f_A 226 HNNFNLTIFTQDGQ-LI-SALESKVKHAQCFDVALMDDGSVVLA-SKDYRLYIYRYVQ 280 (286)
T ss_dssp SSSCEEEEECTTSC-EE-EEEEESSCCSCEEEEEEETTTEEEEE-ETTTEEEEEECSC
T ss_pred CCCEEEEEECCCCC-EE-EEEcccCCCCcceeEEECCCCcEEEE-CCCCeEEEEEccc
Confidence 776 9999996543 22 2222221 224677788887777 6799999998754
No 166
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=99.79 E-value=1e-16 Score=135.91 Aligned_cols=244 Identities=9% Similarity=0.072 Sum_probs=154.9
Q ss_pred cCCcEEEEEecCC--EEEEccCCCcEEEEcCC-cc-eecccCC--CCCeeEEEEe--CCE--EEEEe-------------
Q 047325 43 EEGHIYSLAASKD--LLYTGSDSKNIRVWKNL-KE-FCGFKAS--SGLVKAIVIS--GEK--IFTGH------------- 99 (368)
Q Consensus 43 h~~~i~~~~~~~~--~l~s~~~dg~i~iw~~~-~~-~~~~~~~--~~~v~~~~~~--~~~--l~s~~------------- 99 (368)
+...+..++++++ +|++++.+ .|.+|++. +. ......+ .+....++++ +++ ++++.
T Consensus 38 ~~~~~~~~a~spdg~~l~~~~~~-~v~~~~~~~~g~~~~~~~~~~~g~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~ 116 (365)
T 1jof_A 38 QDEPISWMTFDHERKNIYGAAMK-KWSSFAVKSPTEIVHEASHPIGGHPRANDADTNTRAIFLLAAKQPPYAVYANPFYK 116 (365)
T ss_dssp TTCCCSEEEECTTSSEEEEEEBT-EEEEEEEEETTEEEEEEEEECCSSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESS
T ss_pred CCCCCcEEEECCCCCEEEEEccc-eEEEEEECCCCCEEEeeEeecCCCCccEEECCCCCEEEEEEecCCcceeccceeec
Confidence 3346777888755 78888887 99999975 32 2111111 1234456665 553 44553
Q ss_pred CCCeEEEEeecC-CCccccccCCccccceeeeeccCCCCceeEecccceeee-eecCCCEeEEEEcCCCCEEEEEeC-CC
Q 047325 100 QDGKIRVWKISP-KNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALW-IRHSDAVSCMSLDQDCGLLYTASW-DR 176 (368)
Q Consensus 100 ~dg~i~vw~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~~~~~-d~ 176 (368)
.+|.+.+|++.. ++...... .+ ..+...+.+++|+|++++++++.. ++
T Consensus 117 ~~g~v~v~~~~~~g~~~~~~~-----------------------------~~~~~~~~~~~~~~~spdG~~l~~~~~~~~ 167 (365)
T 1jof_A 117 FAGYGNVFSVSETGKLEKNVQ-----------------------------NYEYQENTGIHGMVFDPTETYLYSADLTAN 167 (365)
T ss_dssp SCCEEEEEEECTTCCEEEEEE-----------------------------EEECCTTCCEEEEEECTTSSEEEEEETTTT
T ss_pred CCceEEEEccCCCCcCcceEe-----------------------------eEEeCCCCcceEEEECCCCCEEEEEcCCCC
Confidence 689999999974 32111000 00 014567899999999998887764 67
Q ss_pred cEEEEEcc-CCeEE--EEee--cCCCceEEEEeCCCC-eEEEEc-CCCeEEEEEcCCCCCCcc--cccceeec----ccc
Q 047325 177 TFKVWRIS-DSKCL--ESVS--AHDDAVNSVVSSSEG-LIFTGS-ADGTVKVWKREQHGKGTK--HSLAQTLL----KQE 243 (368)
Q Consensus 177 ~i~iwd~~-~~~~~--~~~~--~~~~~v~~~~~~~~~-~l~~~~-~dg~i~i~d~~~~~~~~~--~~~~~~~~----~~~ 243 (368)
.|.+||+. +++.. ..+. .+...+..++|+|+| .+++++ .++.|.+|+++....... ......+. ++.
T Consensus 168 ~v~~~~~~~~g~~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~ 247 (365)
T 1jof_A 168 KLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRD 247 (365)
T ss_dssp EEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBC
T ss_pred EEEEEEECCCCCEEEeeeEecCCCCCCCCEeEECCCCCEEEEEECCCCeEEEEEEeCCCCcEEEccceEEcCCCCcCCcc
Confidence 99999998 67643 3343 235678999999999 666655 478999998763211000 00111111 122
Q ss_pred c------cEEEEE-EcCCCCEEEEecCCC------cEEEEeCC-Cccccce--eeecc--ceEEEEEEe---CCCEEEEe
Q 047325 244 C------AVTALV-VSSSRSIVYCGSSDG------LVNFWERE-KQLSHGG--VLKGH--KLAVLCLAA---AGKLVFSG 302 (368)
Q Consensus 244 ~------~i~~~~-~~~~~~~l~~~~~dg------~i~i~d~~-~~~~~~~--~~~~~--~~~~~~~~~---~~~~l~~~ 302 (368)
. .+..++ |+|++++|+++..+. .|.+|++. ++..... ....+ ...-++++| ++++|+++
T Consensus 248 ~~~~~~~~~~~i~~~spdG~~l~v~~~~~~~~~~~~i~v~~~~~~g~~~~~~~~~~~~~~~~~~~a~sp~~~dg~~l~v~ 327 (365)
T 1jof_A 248 PETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPCPWSDEWMAIT 327 (365)
T ss_dssp TTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEECTTCTTEEEEE
T ss_pred cccccccccccEEEECCCCCEEEEECCCCCCCCCCeEEEEEECCCCCEEEeeeeeecCCCCcccceecCCCcCCCEEEEE
Confidence 2 588999 999999888766432 89999986 3332210 12112 223467899 89999988
Q ss_pred eCC-CeEEEEecCCC
Q 047325 303 SAD-KTICVWRRDGA 316 (368)
Q Consensus 303 ~~d-g~i~iw~~~~~ 316 (368)
+.+ +.|.+|+++..
T Consensus 328 ~~~~~~v~v~~~~~~ 342 (365)
T 1jof_A 328 DDQEGWLEIYRWKDE 342 (365)
T ss_dssp CSSSCEEEEEEEETT
T ss_pred EcCCCeEEEEEEchh
Confidence 864 89999998765
No 167
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=99.78 E-value=6.4e-16 Score=126.41 Aligned_cols=223 Identities=10% Similarity=0.147 Sum_probs=150.0
Q ss_pred CCCCCeeEEEEe--CCEEEEEeCCCeEEEEeecCCCccccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCE
Q 047325 80 ASSGLVKAIVIS--GEKIFTGHQDGKIRVWKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAV 157 (368)
Q Consensus 80 ~~~~~v~~~~~~--~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 157 (368)
++-....+++++ ++.+++...++.|.+||.+. +.......... ..++...+
T Consensus 27 g~~~~p~~v~~~~~g~l~v~~~~~~~i~~~d~~g-~~~~~~~~~~~--------------------------~~~~~~~p 79 (286)
T 1q7f_A 27 GQFTEPSGVAVNAQNDIIVADTNNHRIQIFDKEG-RFKFQFGECGK--------------------------RDSQLLYP 79 (286)
T ss_dssp TCBSCEEEEEECTTCCEEEEEGGGTEEEEECTTS-CEEEEECCBSS--------------------------STTCBSSE
T ss_pred CccCCCceEEECCCCCEEEEECCCCEEEEECCCC-cEEEEecccCC--------------------------CcccccCc
Confidence 455668888887 66777778899999999763 22111110000 00144567
Q ss_pred eEEEEc-CCCCEEEEEeC-CCcEEEEEccCCeEEEEeec-CCCceEEEEeCCCC-eEEEEcCCCeEEEEEcCCCCCCccc
Q 047325 158 SCMSLD-QDCGLLYTASW-DRTFKVWRISDSKCLESVSA-HDDAVNSVVSSSEG-LIFTGSADGTVKVWKREQHGKGTKH 233 (368)
Q Consensus 158 ~~~~~~-~~~~~l~~~~~-d~~i~iwd~~~~~~~~~~~~-~~~~v~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~ 233 (368)
..+++. +++.++++... ++.|.+|| .+++.+..+.. +...+.++++.+++ .+++...++.|.+||....
T Consensus 80 ~~i~~~~~~g~l~v~~~~~~~~i~~~d-~~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~g~------ 152 (286)
T 1q7f_A 80 NRVAVVRNSGDIIVTERSPTHQIQIYN-QYGQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQNGN------ 152 (286)
T ss_dssp EEEEEETTTTEEEEEECGGGCEEEEEC-TTSCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTTSC------
T ss_pred eEEEEEcCCCeEEEEcCCCCCEEEEEC-CCCcEEEEecCccCCCceEEEEeCCCCEEEEECCCCEEEEEcCCCC------
Confidence 899994 66665555533 78999999 56777766643 34568999999999 6666677899999996532
Q ss_pred ccceeec--cccccEEEEEEcCCCCEEEEecCCCcEEEEeCCCccccceeeecc----ceEEEEEEeCCCEEEEeeCCC-
Q 047325 234 SLAQTLL--KQECAVTALVVSSSRSIVYCGSSDGLVNFWEREKQLSHGGVLKGH----KLAVLCLAAAGKLVFSGSADK- 306 (368)
Q Consensus 234 ~~~~~~~--~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~----~~~~~~~~~~~~~l~~~~~dg- 306 (368)
....+. .+...+..++++|+++++++...++.|++||...... ..+..+ ...-++++++++++++...++
T Consensus 153 -~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~g~~~--~~~~~~g~~~~p~~i~~d~~G~l~v~~~~~~~ 229 (286)
T 1q7f_A 153 -VLHKFGCSKHLEFPNGVVVNDKQEIFISDNRAHCVKVFNYEGQYL--RQIGGEGITNYPIGVGINSNGEILIADNHNNF 229 (286)
T ss_dssp -EEEEEECTTTCSSEEEEEECSSSEEEEEEGGGTEEEEEETTCCEE--EEESCTTTSCSEEEEEECTTCCEEEEECSSSC
T ss_pred -EEEEeCCCCccCCcEEEEECCCCCEEEEECCCCEEEEEcCCCCEE--EEEccCCccCCCcEEEECCCCCEEEEeCCCCE
Confidence 122221 3345689999999999888888899999999764322 122211 223366777898888888776
Q ss_pred eEEEEecCCCceeeeEeeeccc--cCeeEEEEecCCee
Q 047325 307 TICVWRRDGAIHTCLSVLTGHT--GPVKCLAVEEDRDS 342 (368)
Q Consensus 307 ~i~iw~~~~~~~~~~~~~~~h~--~~v~~l~~~~~~~~ 342 (368)
.|.+|+.+. ..+..+..+. ..+.+++++|+|.+
T Consensus 230 ~i~~~~~~g---~~~~~~~~~~~~~~~~~i~~~~~g~l 264 (286)
T 1q7f_A 230 NLTIFTQDG---QLISALESKVKHAQCFDVALMDDGSV 264 (286)
T ss_dssp EEEEECTTS---CEEEEEEESSCCSCEEEEEEETTTEE
T ss_pred EEEEECCCC---CEEEEEcccCCCCcceeEEECCCCcE
Confidence 999998643 3444554443 34789999999984
No 168
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=99.76 E-value=4.5e-16 Score=129.86 Aligned_cols=255 Identities=10% Similarity=0.071 Sum_probs=164.5
Q ss_pred CCcEEEEEecCC--EEEEccCCCcEEEEcCCcceecccCCC-CCeeEEEEeCCEEEEEeCCCeEEEEeecCCCccccccC
Q 047325 44 EGHIYSLAASKD--LLYTGSDSKNIRVWKNLKEFCGFKASS-GLVKAIVISGEKIFTGHQDGKIRVWKISPKNQSVHKRA 120 (368)
Q Consensus 44 ~~~i~~~~~~~~--~l~s~~~dg~i~iw~~~~~~~~~~~~~-~~v~~~~~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~ 120 (368)
-+.+.+++++++ ++++.+.++.+.+++.... ..+..+. .++ .++.|.+||..+++.......
T Consensus 23 l~~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~-~~~~~~~~~~~--------------~~~~i~~~d~~~g~~~~~~~~ 87 (329)
T 3fvz_A 23 PGQVSGVALDSKNNLVIFHRGDHVWDGNSFDSK-FVYQQRGLGPI--------------EEDTILVIDPNNAEILQSSGK 87 (329)
T ss_dssp CSCEEEEEECTTCCEEEEECTTCCCCTTSBCTT-SCBSCGGGCSC--------------CSCCEEEECTTTCCEEEEECT
T ss_pred cCCceEEEECCCCCEEEEeCCCCeEEeeccCcc-eeecccccccc--------------cCCcEEEEECCCCeEEeccCC
Confidence 588999999754 7777777776555443322 1121111 111 478899999877654221110
Q ss_pred CccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcCCCCEEEEEeCCCcEEEEEccCCe-EEEEee------
Q 047325 121 GTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCGLLYTASWDRTFKVWRISDSK-CLESVS------ 193 (368)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~-~~~~~~------ 193 (368)
++-.....++++|+++++++...++.|++||..... .+..+.
T Consensus 88 -------------------------------~~~~~p~gia~d~~g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g 136 (329)
T 3fvz_A 88 -------------------------------NLFYLPHGLSIDTDGNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPG 136 (329)
T ss_dssp -------------------------------TTCSSEEEEEECTTSCEEEEETTTTEEEEECTTCSSCCSEEESBTTBCC
T ss_pred -------------------------------CccCCceEEEECCCCCEEEEECCCCEEEEEeCCCCeEEEEEecccCCCC
Confidence 134567899999999988888888999999985442 444442
Q ss_pred ---cCCCceEEEEeCC-CC-eEEEEc-CCCeEEEEEcCCCCCCcccccceeec----------cccccEEEEEEcCC-CC
Q 047325 194 ---AHDDAVNSVVSSS-EG-LIFTGS-ADGTVKVWKREQHGKGTKHSLAQTLL----------KQECAVTALVVSSS-RS 256 (368)
Q Consensus 194 ---~~~~~v~~~~~~~-~~-~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~~----------~~~~~i~~~~~~~~-~~ 256 (368)
.+......++++| ++ .+++.+ .++.|++||.... ....+. .+-.....++++|+ ++
T Consensus 137 ~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~~~~~~g~-------~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~ 209 (329)
T 3fvz_A 137 SDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRIVQFSPSGK-------FVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQ 209 (329)
T ss_dssp CSTTCCSSEEEEEECTTTCCEEEEECSSCCEEEEECTTSC-------EEEEECEECCSSSCCTTEESCEEEEEEETTTTE
T ss_pred CCccccCCCcEEEEeCCCCeEEEEeCCCCCeEEEEcCCCC-------EEEEeccCCCCCCCCCcccCCCcEEEEECCCCE
Confidence 3344688999999 67 555554 5899999995421 222221 12234889999998 77
Q ss_pred EEEEecCCCcEEEEeCCCccccceee-eccc--eEEEEEEe------CCCEEEEeeCCCeEEEEecCCCceeeeEee---
Q 047325 257 IVYCGSSDGLVNFWEREKQLSHGGVL-KGHK--LAVLCLAA------AGKLVFSGSADKTICVWRRDGAIHTCLSVL--- 324 (368)
Q Consensus 257 ~l~~~~~dg~i~i~d~~~~~~~~~~~-~~~~--~~~~~~~~------~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~--- 324 (368)
++++...++.|++||..+++...... ..+. ....+++| +++..++...+..|++|++.++ +.+..+
T Consensus 210 l~v~d~~~~~I~~~~~~~G~~~~~~~~~~~~~~~~~~~~~pg~~~~~~g~~~v~~~~~~~v~~~~~~~g--~~~~~~~~~ 287 (329)
T 3fvz_A 210 LCVADRENGRIQCFKTDTKEFVREIKHASFGRNVFAISYIPGFLFAVNGKPYFGDQEPVQGFVMNFSSG--EIIDVFKPV 287 (329)
T ss_dssp EEEEETTTTEEEEEETTTCCEEEEECCTTTTTCEEEEEEETTEEEEEECCCCTTCSCCCCEEEEETTTC--CEEEEECCS
T ss_pred EEEEECCCCEEEEEECCCCcEEEEEeccccCCCcceeeecCCEEEEeCCCEEeccCCCcEEEEEEcCCC--eEEEEEcCC
Confidence 88888889999999998554432221 1122 22244445 4454444555678999998776 555555
Q ss_pred eccccCeeEEEEecCCeeeecCCcceEEE
Q 047325 325 TGHTGPVKCLAVEEDRDSSSSTSSCAQRW 353 (368)
Q Consensus 325 ~~h~~~v~~l~~~~~~~~~~~~~~~~~~w 353 (368)
.++...+.+|+++|+|.++++..+..+++
T Consensus 288 ~~~~~~p~~ia~~~dG~lyvad~~~~~I~ 316 (329)
T 3fvz_A 288 RKHFDMPHDIVASEDGTVYIGDAHTNTVW 316 (329)
T ss_dssp SSCCSSEEEEEECTTSEEEEEESSSCCEE
T ss_pred CCccCCeeEEEECCCCCEEEEECCCCEEE
Confidence 35677799999999998655554443433
No 169
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.75 E-value=4.9e-17 Score=139.41 Aligned_cols=295 Identities=10% Similarity=-0.010 Sum_probs=172.0
Q ss_pred CceeeeccCcCCc-----EEEEEecCC--EEEEccC-C--CcEEEEcCCcc-eecccCCCCCee-EEEEe--CCEEEEEe
Q 047325 34 NGLIGSLVREEGH-----IYSLAASKD--LLYTGSD-S--KNIRVWKNLKE-FCGFKASSGLVK-AIVIS--GEKIFTGH 99 (368)
Q Consensus 34 ~~~~~~~~~h~~~-----i~~~~~~~~--~l~s~~~-d--g~i~iw~~~~~-~~~~~~~~~~v~-~~~~~--~~~l~s~~ 99 (368)
+..+..+..+... +.+++|+++ +|+.... + ..|.+||+... ...+..+..... .+.|+ +++|+.++
T Consensus 20 g~~~~~l~~~~~~~~~~~~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~spdg~~l~~~~ 99 (396)
T 3c5m_A 20 QVKVTRLTPTDIICHRNYFYQKCFTQDGKKLLFAGDFDGNRNYYLLNLETQQAVQLTEGKGDNTFGGFISTDERAFFYVK 99 (396)
T ss_dssp CCEEEECSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTTEEEECCCSSCBCTTTCEECTTSSEEEEEE
T ss_pred CcceEEEecCCCCccceeeecCcCCCCCCEEEEEEecCCCceEEEEECCCCcEEEeecCCCCccccceECCCCCEEEEEE
Confidence 3344445444333 566677644 6555433 3 46888887643 233333333322 35666 88999999
Q ss_pred CCCeEEEEeecCCCccccccCCcc--ccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcCCCCEEEEE-----
Q 047325 100 QDGKIRVWKISPKNQSVHKRAGTL--PTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCGLLYTA----- 172 (368)
Q Consensus 100 ~dg~i~vw~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~----- 172 (368)
.++.|.+||+.+++.......... +....+...... . .... ......++|+++.++..
T Consensus 100 ~~~~l~~~d~~~~~~~~~~~~~~~~~~~g~~l~~~~~~--~-------~~~~------~~~~~~~spdg~~~~~~~~~~~ 164 (396)
T 3c5m_A 100 NELNLMKVDLETLEEQVIYTVDEEWKGYGTWVANSDCT--K-------LVGI------EILKRDWQPLTSWEKFAEFYHT 164 (396)
T ss_dssp TTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSS--E-------EEEE------EEEGGGCCCCCSHHHHHHHHHT
T ss_pred cCCcEEEEECCCCCcEEEEecccccCCCCCEEEeccCC--c-------cccc------cccccccCCCCcceeeeeeccC
Confidence 999999999987764322211100 000000000000 0 0000 00113567888776654
Q ss_pred eCCCcEEEEEccCCeEEEEeecCCCceEEEEeCC-CC-eEEEEcCC------CeEEEEEcCCCCCCcccccceeeccc--
Q 047325 173 SWDRTFKVWRISDSKCLESVSAHDDAVNSVVSSS-EG-LIFTGSAD------GTVKVWKREQHGKGTKHSLAQTLLKQ-- 242 (368)
Q Consensus 173 ~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~-~~-~l~~~~~d------g~i~i~d~~~~~~~~~~~~~~~~~~~-- 242 (368)
..+..|.+||+.+++..... .+...+..+.|+| ++ .|+..+.+ ..|.+||+.... ...+..+
T Consensus 165 ~~~~~l~~~d~~~g~~~~~~-~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~-------~~~l~~~~~ 236 (396)
T 3c5m_A 165 NPTCRLIKVDIETGELEVIH-QDTAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSN-------VRKIKEHAE 236 (396)
T ss_dssp CCCEEEEEEETTTCCEEEEE-EESSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCC-------CEESSCCCT
T ss_pred CCcceEEEEECCCCcEEeec-cCCcccccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCc-------eeEeeccCC
Confidence 35678999999988765544 4567789999999 66 55554433 468888876432 1122222
Q ss_pred cccEEEEEEcCCCCEEEEecCC-----CcEEEEeCCCccccceeeeccceEEEEEEe-CCCEEEEee-------------
Q 047325 243 ECAVTALVVSSSRSIVYCGSSD-----GLVNFWEREKQLSHGGVLKGHKLAVLCLAA-AGKLVFSGS------------- 303 (368)
Q Consensus 243 ~~~i~~~~~~~~~~~l~~~~~d-----g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~------------- 303 (368)
...+..++|+|+++.|+.++.+ +.|++||+.++.... ........ ..+++ ++++++.++
T Consensus 237 ~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~-l~~~~~~~-~~~s~~dg~~l~~~~~~~p~~~~~~~~~ 314 (396)
T 3c5m_A 237 GESCTHEFWIPDGSAMAYVSYFKGQTDRVIYKANPETLENEE-VMVMPPCS-HLMSNFDGSLMVGDGCDAPVDVADADSY 314 (396)
T ss_dssp TEEEEEEEECTTSSCEEEEEEETTTCCEEEEEECTTTCCEEE-EEECCSEE-EEEECSSSSEEEEEECCC----------
T ss_pred CccccceEECCCCCEEEEEecCCCCccceEEEEECCCCCeEE-eeeCCCCC-CCccCCCCceEEEecCCcceeecccccc
Confidence 3457889999999987776543 449999998764331 11111122 77888 999888754
Q ss_pred ---CCCeEEEEecCCCceeeeEeeecccc-----------CeeEEEEecCCeeeecCC---cceEEEEEe
Q 047325 304 ---ADKTICVWRRDGAIHTCLSVLTGHTG-----------PVKCLAVEEDRDSSSSTS---SCAQRWIVY 356 (368)
Q Consensus 304 ---~dg~i~iw~~~~~~~~~~~~~~~h~~-----------~v~~l~~~~~~~~~~~~~---~~~~~w~l~ 356 (368)
.++.|++||+.++... .+..+.. .+..++|+|+|+.++..+ +...+|.+-
T Consensus 315 ~~~~~~~i~~~d~~~~~~~---~l~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~s~~~~~~~l~~~~ 381 (396)
T 3c5m_A 315 NIENDPFLYVLNTKAKSAQ---KLCKHSTSWDVLDGDRQITHPHPSFTPNDDGVLFTSDFEGVPAIYIAD 381 (396)
T ss_dssp CCCCCCEEEEEETTTTBCC---EEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEEEEE
T ss_pred ccCCCCcEEEEecccCceE---EccCCCCccccccccccCCCCCceEccCCCeEEEEecCCCCceEEEEE
Confidence 3478999998776332 3334443 256789999998766443 334566553
No 170
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=99.75 E-value=3.6e-16 Score=143.26 Aligned_cols=239 Identities=11% Similarity=0.038 Sum_probs=155.9
Q ss_pred eeeccCcCCcEE---------EEEe----cCCE-EEEcc-CCCcEEEEcCC----cceecccC-----CCCCeeEEEEe-
Q 047325 37 IGSLVREEGHIY---------SLAA----SKDL-LYTGS-DSKNIRVWKNL----KEFCGFKA-----SSGLVKAIVIS- 91 (368)
Q Consensus 37 ~~~~~~h~~~i~---------~~~~----~~~~-l~s~~-~dg~i~iw~~~----~~~~~~~~-----~~~~v~~~~~~- 91 (368)
...+..|...+. .+.+ +++. |+.++ .+..|.++++. .....+.. |...+.+++|+
T Consensus 60 ~~~l~~~~~~~~~~~~~~~~~~~~~~~SPDg~~~la~~~~~~~~l~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~sp 139 (662)
T 3azo_A 60 EESALPAPWNVRNRVFEYSGFPWAGVPRPAGGPLLVFTHFGDQRLYAFEPDAPGGAVPRPLTPVSAVGGGLRWADPVLLP 139 (662)
T ss_dssp EEESSCTTCCBCCCGGGTCCCCEEEECCSSSSCEEEEEBTTTCCEEEECTTSTTCCCCEECSCCCCSTTCEEEEEEEEET
T ss_pred cceeCCCCccccccccccCCccceeeeecCCCeEEEEEECCCCeEEEEcCCCCCCCCCEeccCCccCCCCccccCcEECC
Confidence 445556655544 4433 3556 66554 36778888876 45555555 66778889998
Q ss_pred -CCEEEEEeCC----------CeEEEEeecC------CCccccccCCccccceeeeeccCCCCceeEecccceeeeeecC
Q 047325 92 -GEKIFTGHQD----------GKIRVWKISP------KNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHS 154 (368)
Q Consensus 92 -~~~l~s~~~d----------g~i~vw~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (368)
|+.|++++.| ..|.+||+.+ ++...... .+.
T Consensus 140 Dg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~--------------------------------~~~ 187 (662)
T 3azo_A 140 ERGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAADRSAVRELSD--------------------------------DAH 187 (662)
T ss_dssp TTTEEEEEEEEECSSSTTCEEEEEEEEETTSTTTTCGGGSEESSC--------------------------------SCS
T ss_pred CCCEEEEEEecccCCCCCCceeEEEEEECCCCccccCCceeEEEe--------------------------------cCC
Confidence 7889988877 5899999887 32211110 144
Q ss_pred CCEeEEEEcCCCCEEEEEeCC--------CcEEEEEcc-CC---eEEEEeecCCCceEEEEeCCCC-eEEEEcCCC--eE
Q 047325 155 DAVSCMSLDQDCGLLYTASWD--------RTFKVWRIS-DS---KCLESVSAHDDAVNSVVSSSEG-LIFTGSADG--TV 219 (368)
Q Consensus 155 ~~v~~~~~~~~~~~l~~~~~d--------~~i~iwd~~-~~---~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~dg--~i 219 (368)
..+..++|+|||++|+.++.+ ..|.+||+. ++ +.......+...+..+.|+|+| +++++..++ .|
T Consensus 188 ~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~~~~~~~~~~~spdg~l~~~~~~~~~~~l 267 (662)
T 3azo_A 188 RFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLGGPEEAIAQAEWAPDGSLIVATDRTGWWNL 267 (662)
T ss_dssp SEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEEETTBCEEEEEECTTSCEEEEECTTSSCEE
T ss_pred CcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeCCCCCceEcceEECCCCeEEEEECCCCCeEE
Confidence 567788999999999888755 379999998 57 4555555567889999999999 777777788 56
Q ss_pred EEEEcCCCCCCcccccceeecccccc--------EEEEEEcCCCCEEEEecCCCcEEEE--eCCCccccceeeeccceEE
Q 047325 220 KVWKREQHGKGTKHSLAQTLLKQECA--------VTALVVSSSRSIVYCGSSDGLVNFW--EREKQLSHGGVLKGHKLAV 289 (368)
Q Consensus 220 ~i~d~~~~~~~~~~~~~~~~~~~~~~--------i~~~~~~~~~~~l~~~~~dg~i~i~--d~~~~~~~~~~~~~~~~~~ 289 (368)
.+||+..+. .......+... +..++|+|++++++++.. +.+++| |+.++.. ..+..+...+
T Consensus 268 ~~~~~~~~~------~~~l~~~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~d~~~~~~--~~l~~~~~~~ 338 (662)
T 3azo_A 268 HRVDPATGA------ATQLCRREEEFAGPLWTPGMRWFAPLANGLIAVVHGK-GAAVLGILDPESGEL--VDAAGPWTEW 338 (662)
T ss_dssp EEECTTTCC------EEESSCCSSBSSCCCCSTTCCSEEECTTSCEEEEEBS-SSCEEEEEETTTTEE--EECCSSCCEE
T ss_pred EEEECCCCc------eeecccccccccCccccccCceEeEeCCCEEEEEEEc-CccEEEEEECCCCcE--EEecCCCCeE
Confidence 666654331 11111111111 457889999999999998 999999 5554432 3455566666
Q ss_pred EEE-EeCCCEE--EEeeCCCeEEEE--ecCCC
Q 047325 290 LCL-AAAGKLV--FSGSADKTICVW--RRDGA 316 (368)
Q Consensus 290 ~~~-~~~~~~l--~~~~~dg~i~iw--~~~~~ 316 (368)
..+ +++++.+ ++++.+....+| |+.++
T Consensus 339 ~~~~s~~~~~~~~~~~~~~~~~~i~~~d~~~g 370 (662)
T 3azo_A 339 AATLTVSGTRAVGVAASPRTAYEVVELDTVTG 370 (662)
T ss_dssp EEEEEEETTEEEEEEEETTEEEEEEEEETTTC
T ss_pred EEEEecCCCEEEEEEcCCCCCCEEEEEECCCC
Confidence 667 7776643 344555544555 54454
No 171
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=99.75 E-value=1e-15 Score=129.10 Aligned_cols=248 Identities=9% Similarity=0.095 Sum_probs=158.1
Q ss_pred CCCcEEEEcCCcc--eecccCCCCCeeEEEEe--CCEEEEEe----------CCCeEEEEeecCCCccccccCCccccce
Q 047325 62 DSKNIRVWKNLKE--FCGFKASSGLVKAIVIS--GEKIFTGH----------QDGKIRVWKISPKNQSVHKRAGTLPTLK 127 (368)
Q Consensus 62 ~dg~i~iw~~~~~--~~~~~~~~~~v~~~~~~--~~~l~s~~----------~dg~i~vw~~~~~~~~~~~~~~~~~~~~ 127 (368)
.|+.|.+||..+. ...+..+..+ .++++ +++++++. .++.|.+||..+.+...........
T Consensus 29 ~d~~v~v~D~~t~~~~~~i~~g~~p--~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~~~i~~~~~~--- 103 (361)
T 2oiz_A 29 TESRVHVYDYTNGKFLGMVPTAFNG--HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLTFEKEISLPPKR--- 103 (361)
T ss_dssp GGCEEEEEETTTCCEEEEEECCEEE--EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCCEEEEEEECTTB---
T ss_pred ccCeEEEEECCCCeEEEEecCCCCC--ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCCcEEEEEEcCccc---
Confidence 4789999997643 3344444444 77887 77888886 3678999998876543322211000
Q ss_pred eeeeccCCCCceeEecccceeeeeecCCCEeEEEEcCCCCEEEEEeC--CCcEEEEEccCCeEEEE-eecCCCceEEEEe
Q 047325 128 DIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCGLLYTASW--DRTFKVWRISDSKCLES-VSAHDDAVNSVVS 204 (368)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~--d~~i~iwd~~~~~~~~~-~~~~~~~v~~~~~ 204 (368)
..+......++++|++++|+++.. ++.|.+||+.+++.+.. +.... ...+.+
T Consensus 104 -----------------------~~~g~~p~~i~~spdg~~l~v~n~~~~~~v~v~d~~~~~~~~~~i~~~~--~~~v~~ 158 (361)
T 2oiz_A 104 -----------------------VQGLNYDGLFRQTTDGKFIVLQNASPATSIGIVDVAKGDYVEDVTAAAG--CWSVIP 158 (361)
T ss_dssp -----------------------CCBCCCGGGEEECTTSSEEEEEEESSSEEEEEEETTTTEEEEEEGGGTT--EEEEEE
T ss_pred -----------------------cccCCCcceEEECCCCCEEEEECCCCCCeEEEEECCCCcEEEEEecCCC--cceeEE
Confidence 002244567999999999998874 57999999999988877 54321 112333
Q ss_pred CCCC--eEEEEcCCCeEEEEEcCCCCCCc--------------------------------------------cccccee
Q 047325 205 SSEG--LIFTGSADGTVKVWKREQHGKGT--------------------------------------------KHSLAQT 238 (368)
Q Consensus 205 ~~~~--~l~~~~~dg~i~i~d~~~~~~~~--------------------------------------------~~~~~~~ 238 (368)
.|++ .+++.+.||.+.+++....+... .......
T Consensus 159 ~p~~~~~~~~~~~dg~~~~v~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~v~d~~~~~~~~~~~ 238 (361)
T 2oiz_A 159 QPNRPRSFMTICGDGGLLTINLGEDGKVASQSRSKQMFSVKDDPIFIAPALDKDKAHFVSYYGNVYSADFSGDEVKVDGP 238 (361)
T ss_dssp CTTSSSEEEEEETTSSEEEEEECTTSSEEEEEECCCCSCTTTSCBCSCCEECSSEEEEEBTTSEEEEEECSSSSCEEEEE
T ss_pred cCCCCeeEEEECCCCcEEEEEECCCCcEeeeccccceEcCCCCceEEEecccCCEEEEEeCCCeEEEEEecCCCceeccc
Confidence 4443 44555555555555543211100 0000000
Q ss_pred ec--c----c----cccEEEEEEcCCCCEEEEecC-----------CCcEEEEeCCCccccceeeeccceEEEEEEeCCC
Q 047325 239 LL--K----Q----ECAVTALVVSSSRSIVYCGSS-----------DGLVNFWEREKQLSHGGVLKGHKLAVLCLAAAGK 297 (368)
Q Consensus 239 ~~--~----~----~~~i~~~~~~~~~~~l~~~~~-----------dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (368)
+. . . ......++++|+++.++++.. .+.|.+||+.+.+.......+. ..-+.++|+++
T Consensus 239 ~~~~~~~~~~~~~~p~g~~~~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~v~~i~~~~-p~~ia~spdg~ 317 (361)
T 2oiz_A 239 WSLLNDEDKAKNWVPGGYNLVGLHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQRVARIPGRD-ALSMTIDQQRN 317 (361)
T ss_dssp EESCCHHHHHTTCEECCSSCEEEETTTTEEEEEEESSCCTTCTTCCCSEEEEEETTTTEEEEEEECTT-CCEEEEETTTT
T ss_pred ccccCccccccccccCCeeEEEEecCCCeEEEEEccCCCcccccCCCceEEEEECCCCcEEEEEecCC-eeEEEECCCCC
Confidence 00 0 0 001112688999888777643 3489999999887665444444 55688899999
Q ss_pred EEEEeeCCCeEEEEecCCCceeeeEeeeccccCeeEEEEecCCe
Q 047325 298 LVFSGSADKTICVWRRDGAIHTCLSVLTGHTGPVKCLAVEEDRD 341 (368)
Q Consensus 298 ~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~ 341 (368)
+|++++. +.|.+||..+...+.+..+..+......++++|+|.
T Consensus 318 ~l~v~n~-~~v~v~D~~t~~l~~~~~i~~~G~~P~~~~~~p~G~ 360 (361)
T 2oiz_A 318 LMLTLDG-GNVNVYDISQPEPKLLRTIEGAAEASLQVQFHPVGG 360 (361)
T ss_dssp EEEEECS-SCEEEEECSSSSCEEEEEETTSCSSEEEEEECCCSC
T ss_pred EEEEeCC-CeEEEEECCCCcceeeEEeccCCCCcEEEEecCCCC
Confidence 9999887 999999988764467777767778889999999985
No 172
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=99.74 E-value=2.1e-16 Score=146.35 Aligned_cols=237 Identities=11% Similarity=0.024 Sum_probs=151.3
Q ss_pred CCeeEEEEe--CCEEEEEeCCCeEEEEeecCCCccccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEE
Q 047325 83 GLVKAIVIS--GEKIFTGHQDGKIRVWKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCM 160 (368)
Q Consensus 83 ~~v~~~~~~--~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 160 (368)
....++.|. +.+++++ ||.|++||+.+++........... .+......+
T Consensus 17 ~~~~~~~w~~dg~~~~~~--~~~i~~~~~~~~~~~~~~~~~~~~---------------------------~~~~~~~~~ 67 (740)
T 4a5s_A 17 LKLYSLRWISDHEYLYKQ--ENNILVFNAEYGNSSVFLENSTFD---------------------------EFGHSINDY 67 (740)
T ss_dssp CCCCCEEECSSSEEEEEE--TTEEEEEETTTCCEEEEECTTTTT---------------------------TCCSCCCEE
T ss_pred ccccccEECCCCcEEEEc--CCcEEEEECCCCceEEEEechhhh---------------------------hhcccccce
Confidence 345678887 5566665 999999999988743222111000 011223458
Q ss_pred EEcCCCCEEEEEeCC---------CcEEEEEccCCeEEEEeecCCCceEEEEeCCCC-eEEEEcCCCeEEEEEcCCCCCC
Q 047325 161 SLDQDCGLLYTASWD---------RTFKVWRISDSKCLESVSAHDDAVNSVVSSSEG-LIFTGSADGTVKVWKREQHGKG 230 (368)
Q Consensus 161 ~~~~~~~~l~~~~~d---------~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~ 230 (368)
.|+||+++|+.++.+ +.+.+||+.+++.. .+..+...+...+|+||| .|+.+ .++.|++||+..+..
T Consensus 68 ~~Spdg~~l~~~~~~~~~~r~~~~~~~~~~d~~~~~~~-~l~~~~~~~~~~~~SPdG~~la~~-~~~~i~~~~~~~~~~- 144 (740)
T 4a5s_A 68 SISPDGQFILLEYNYVKQWRHSYTASYDIYDLNKRQLI-TEERIPNNTQWVTWSPVGHKLAYV-WNNDIYVKIEPNLPS- 144 (740)
T ss_dssp EECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEEC-CSSCCCTTEEEEEECSSTTCEEEE-ETTEEEEESSTTSCC-
T ss_pred EECCCCCEEEEEECCeeeEEEccceEEEEEECCCCcEE-EcccCCCcceeeEECCCCCEEEEE-ECCeEEEEECCCCce-
Confidence 999999999998876 56779999998865 456677889999999999 66666 578999999876532
Q ss_pred cccccceeeccccccE-----------------EEEEEcCCCCEEEEecCCC----------------------------
Q 047325 231 TKHSLAQTLLKQECAV-----------------TALVVSSSRSIVYCGSSDG---------------------------- 265 (368)
Q Consensus 231 ~~~~~~~~~~~~~~~i-----------------~~~~~~~~~~~l~~~~~dg---------------------------- 265 (368)
......++...+ ..+.|+|||+.|+.++.|.
T Consensus 145 ----~~lt~~g~~~~~~~g~~~~v~~ee~~~~~~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~ 220 (740)
T 4a5s_A 145 ----YRITWTGKEDIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPK 220 (740)
T ss_dssp ----EECCSCCBTTTEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCB
T ss_pred ----EEEcCCCCccceecCcccccccchhcCCCcceEECCCCCEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCC
Confidence 011111222212 3589999999999875321
Q ss_pred --------cEEEEeCCC---ccc--cceeee-----ccceEE--EEEEeCCCEEEEee----CCCeEEEEecCCCc----
Q 047325 266 --------LVNFWEREK---QLS--HGGVLK-----GHKLAV--LCLAAAGKLVFSGS----ADKTICVWRRDGAI---- 317 (368)
Q Consensus 266 --------~i~i~d~~~---~~~--~~~~~~-----~~~~~~--~~~~~~~~~l~~~~----~dg~i~iw~~~~~~---- 317 (368)
.|++||+.+ +.. ...... +|...+ .+++||++.++... .+..|.+||+.++.
T Consensus 221 ~G~~~~~~~l~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~tg~~~~~ 300 (740)
T 4a5s_A 221 AGAVNPTVKFFVVNTDSLSSVTNATSIQITAPASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDESSGRWN 300 (740)
T ss_dssp TTSCCCEEEEEEEETTSCCSSSCCCEEEECCCHHHHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEETTTTEEE
T ss_pred CcCcCCeeEEEEEECCCCCCCCcceEEEecCCccCCCCCeEEEEEEEeCCCeEEEEEeCCCCCEEEEEEEECCCCccccc
Confidence 478888887 521 111111 244444 57889999666543 23479999998764
Q ss_pred eeeeEee--eccccCee-----EEEEecCCeeee-cC---CcceEEEEE
Q 047325 318 HTCLSVL--TGHTGPVK-----CLAVEEDRDSSS-ST---SSCAQRWIV 355 (368)
Q Consensus 318 ~~~~~~~--~~h~~~v~-----~l~~~~~~~~~~-~~---~~~~~~w~l 355 (368)
...+..+ .+|...|. ..+|+|||+.++ .. ++...+|.+
T Consensus 301 ~~~~~~l~~~~~~~~v~~~~~~~p~fspDG~~l~~~~s~~~G~~~l~~~ 349 (740)
T 4a5s_A 301 CLVARQHIEMSTTGWVGRFRPSEPHFTLDGNSFYKIISNEEGYRHICYF 349 (740)
T ss_dssp ECGGGCEEEECSSSCSSSSSCCCCEECTTSSEEEEEEECTTSCEEEEEE
T ss_pred eeEEEEeeeccCCceEccCcCCCceEcCCCCEEEEEEEcCCCceEEEEE
Confidence 1112222 45665554 789999998655 32 344555543
No 173
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=99.74 E-value=1.7e-16 Score=146.93 Aligned_cols=247 Identities=13% Similarity=0.112 Sum_probs=156.9
Q ss_pred cEEEEEecCC--EEEEccCCCcEEEEcCCcc--eecccCCCCC-----eeEEEEe--CCEEEEEeCC---------CeEE
Q 047325 46 HIYSLAASKD--LLYTGSDSKNIRVWKNLKE--FCGFKASSGL-----VKAIVIS--GEKIFTGHQD---------GKIR 105 (368)
Q Consensus 46 ~i~~~~~~~~--~l~s~~~dg~i~iw~~~~~--~~~~~~~~~~-----v~~~~~~--~~~l~s~~~d---------g~i~ 105 (368)
...+++|.++ +++++ ||+|++||+.+. ...+..|... ...+.|+ |++|+.++.+ +.+.
T Consensus 18 ~~~~~~w~~dg~~~~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~~~~~~ 95 (740)
T 4a5s_A 18 KLYSLRWISDHEYLYKQ--ENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYD 95 (740)
T ss_dssp CCCCEEECSSSEEEEEE--TTEEEEEETTTCCEEEEECTTTTTTCCSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEE
T ss_pred cccccEECCCCcEEEEc--CCcEEEEECCCCceEEEEechhhhhhcccccceEECCCCCEEEEEECCeeeEEEccceEEE
Confidence 3557888765 77775 999999998743 3334455432 2335666 8889988876 5667
Q ss_pred EEeecCCCccccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcCCCCEEEEEeCCCcEEEEEccC
Q 047325 106 VWKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCGLLYTASWDRTFKVWRISD 185 (368)
Q Consensus 106 vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~ 185 (368)
+||+.+++..... .|...+...+|+|||+.|+.+. ++.|++||+.+
T Consensus 96 ~~d~~~~~~~~l~---------------------------------~~~~~~~~~~~SPdG~~la~~~-~~~i~~~~~~~ 141 (740)
T 4a5s_A 96 IYDLNKRQLITEE---------------------------------RIPNNTQWVTWSPVGHKLAYVW-NNDIYVKIEPN 141 (740)
T ss_dssp EEETTTTEECCSS---------------------------------CCCTTEEEEEECSSTTCEEEEE-TTEEEEESSTT
T ss_pred EEECCCCcEEEcc---------------------------------cCCCcceeeEECCCCCEEEEEE-CCeEEEEECCC
Confidence 9999987643211 1567789999999999998885 68999999988
Q ss_pred CeEEEEe-ecCCCce-----------------EEEEeCCCC-eEEEEcCCC-----------------------------
Q 047325 186 SKCLESV-SAHDDAV-----------------NSVVSSSEG-LIFTGSADG----------------------------- 217 (368)
Q Consensus 186 ~~~~~~~-~~~~~~v-----------------~~~~~~~~~-~l~~~~~dg----------------------------- 217 (368)
++..+.. .++...+ ..+.|+||| .|+.++.|.
T Consensus 142 ~~~~~lt~~g~~~~~~~g~~~~v~~ee~~~~~~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~ 221 (740)
T 4a5s_A 142 LPSYRITWTGKEDIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKA 221 (740)
T ss_dssp SCCEECCSCCBTTTEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBT
T ss_pred CceEEEcCCCCccceecCcccccccchhcCCCcceEECCCCCEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCC
Confidence 7754422 2222222 358999999 677664221
Q ss_pred -------eEEEEEcCC---CCCCcccccceeec------cccccEEEEEEcCCCCEEEEec----CCCcEEEEeCCCcc-
Q 047325 218 -------TVKVWKREQ---HGKGTKHSLAQTLL------KQECAVTALVVSSSRSIVYCGS----SDGLVNFWEREKQL- 276 (368)
Q Consensus 218 -------~i~i~d~~~---~~~~~~~~~~~~~~------~~~~~i~~~~~~~~~~~l~~~~----~dg~i~i~d~~~~~- 276 (368)
.|++||+.. +... ....+. ++...+..++|+||++.++... .+..|.+||+.++.
T Consensus 222 G~~~~~~~l~v~d~~~~~~~~~~----~~~~l~~~~~~~~~~~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~tg~~ 297 (740)
T 4a5s_A 222 GAVNPTVKFFVVNTDSLSSVTNA----TSIQITAPASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDESSG 297 (740)
T ss_dssp TSCCCEEEEEEEETTSCCSSSCC----CEEEECCCHHHHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEETTTT
T ss_pred cCcCCeeEEEEEECCCCCCCCcc----eEEEecCCccCCCCCeEEEEEEEeCCCeEEEEEeCCCCCEEEEEEEECCCCcc
Confidence 477788775 3110 011111 3677799999999999666543 23479999998765
Q ss_pred ---c--ccee-eeccce-------EEEEEEeCCCEEE-Eee-CCC--eEEEEecCCCceeeeEeeeccccCeeEEE
Q 047325 277 ---S--HGGV-LKGHKL-------AVLCLAAAGKLVF-SGS-ADK--TICVWRRDGAIHTCLSVLTGHTGPVKCLA 335 (368)
Q Consensus 277 ---~--~~~~-~~~~~~-------~~~~~~~~~~~l~-~~~-~dg--~i~iw~~~~~~~~~~~~~~~h~~~v~~l~ 335 (368)
+ .... ...|.. .-..++|||+.|+ ..+ .+| .|++|+++++. .. .+......|..+.
T Consensus 298 ~~~~~~~~~l~~~~~~~~v~~~~~~~p~fspDG~~l~~~~s~~~G~~~l~~~~~~~~~--~~-~lT~g~~~v~~~~ 370 (740)
T 4a5s_A 298 RWNCLVARQHIEMSTTGWVGRFRPSEPHFTLDGNSFYKIISNEEGYRHICYFQIDKKD--CT-FITKGTWEVIGIE 370 (740)
T ss_dssp EEEECGGGCEEEECSSSCSSSSSCCCCEECTTSSEEEEEEECTTSCEEEEEEETTCSS--CE-ESCCSSSCEEEEE
T ss_pred ccceeEEEEeeeccCCceEccCcCCCceEcCCCCEEEEEEEcCCCceEEEEEECCCCc--eE-ecccCCEEEEEEE
Confidence 1 1111 123332 1346889999776 555 344 47777776652 22 3333344555544
No 174
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=99.72 E-value=4.5e-16 Score=133.12 Aligned_cols=231 Identities=9% Similarity=0.001 Sum_probs=149.1
Q ss_pred eecccCCCCCeeE-----EEEe--CCEEEEEeC-CCe--EEEEeecCCCccccccCCccccceeeeeccCCCCceeEecc
Q 047325 75 FCGFKASSGLVKA-----IVIS--GEKIFTGHQ-DGK--IRVWKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRR 144 (368)
Q Consensus 75 ~~~~~~~~~~v~~-----~~~~--~~~l~s~~~-dg~--i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 144 (368)
...+..|...... .+|+ |++|+.++. +|. |.+||+.+++......
T Consensus 23 ~~~lt~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~lt~------------------------- 77 (388)
T 3pe7_A 23 VTRLTPPDVTCHRNYFYQKCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVATQLTE------------------------- 77 (388)
T ss_dssp EEECSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTCEEEECCC-------------------------
T ss_pred eEEecCCcccccchhhcCccCCCCCCEEEEEEcCCCCceEEEEeCCCCceEEeee-------------------------
Confidence 3445555544444 5566 888888887 674 7778887765432221
Q ss_pred cceeeeeecCCCEeEEEEcCCCCEEEEEeCCCcEEEEEccCCeEEEEeecCCCceEEEE--eCCCC-eEEE---------
Q 047325 145 HRTALWIRHSDAVSCMSLDQDCGLLYTASWDRTFKVWRISDSKCLESVSAHDDAVNSVV--SSSEG-LIFT--------- 212 (368)
Q Consensus 145 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~--~~~~~-~l~~--------- 212 (368)
++...+....|+|+++.|+.++.++.|++||+.+++....+..+...+.... +++++ .++.
T Consensus 78 -------~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~ 150 (388)
T 3pe7_A 78 -------GRGDNTFGGFLSPDDDALFYVKDGRNLMRVDLATLEENVVYQVPAEWVGYGTWVANSDCTKLVGIEIRREDWV 150 (388)
T ss_dssp -------SSCBCSSSCEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCC
T ss_pred -------CCCCCccceEEcCCCCEEEEEeCCCeEEEEECCCCcceeeeechhhcccccceeECCCCCeeccccccCcccc
Confidence 1333444578999999999999999999999999988777766666554443 48888 4442
Q ss_pred -------------EcCCCeEEEEEcCCCCCCcccccceeeccccccEEEEEEcC-CCCEEEEecCC------CcEEEEeC
Q 047325 213 -------------GSADGTVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSS-SRSIVYCGSSD------GLVNFWER 272 (368)
Q Consensus 213 -------------~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~d------g~i~i~d~ 272 (368)
...+..|.+||+..+. ...+..+...+..+.|+| +++.|+....+ ..|.++|.
T Consensus 151 ~~~~~~~~~~~~~~~~~~~l~~~d~~~g~-------~~~l~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~ 223 (388)
T 3pe7_A 151 PLTDWKKFHEFYFTKPCCRLMRVDLKTGE-------STVILQENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINE 223 (388)
T ss_dssp CCCSHHHHHHHGGGCCCEEEEEEETTTCC-------EEEEEEESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEET
T ss_pred cccccchhhhhhccCCcceEEEEECCCCc-------eEEeecCCccccccEECCCCCCEEEEEEecCCCCCcceEEEEeC
Confidence 2245789999998652 233444556789999999 99988876653 37888887
Q ss_pred CCccccceeeeccc---eEEEEEEeCCCEEEEeeC-CC----eEEEEecCCCceeeeEeeeccccC---eeEEEEecCCe
Q 047325 273 EKQLSHGGVLKGHK---LAVLCLAAAGKLVFSGSA-DK----TICVWRRDGAIHTCLSVLTGHTGP---VKCLAVEEDRD 341 (368)
Q Consensus 273 ~~~~~~~~~~~~~~---~~~~~~~~~~~~l~~~~~-dg----~i~iw~~~~~~~~~~~~~~~h~~~---v~~l~~~~~~~ 341 (368)
...... .....+. .....++|||+.|+..+. ++ .|++||+.++....+..+.++... ...++|+|||+
T Consensus 224 ~~~~~~-~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~spdg~ 302 (388)
T 3pe7_A 224 DGTNMR-KVKTHAEGESCTHEFWVPDGSALVYVSYLKGSPDRFIYSADPETLENRQLTSMPACSHLMSNYDGSLMVGDGS 302 (388)
T ss_dssp TSCCCE-ESCCCCTTEEEEEEEECTTSSCEEEEEEETTCCCEEEEEECTTTCCEEEEEEECCEEEEEECTTSSEEEEEEC
T ss_pred CCCceE-EeeeCCCCcccccceECCCCCEEEEEecCCCCCcceEEEEecCCCceEEEEcCCCceeeeecCCCCeEccCCC
Confidence 654332 1222221 223568889987755433 22 499999988755555555442111 22247999998
Q ss_pred eeec
Q 047325 342 SSSS 345 (368)
Q Consensus 342 ~~~~ 345 (368)
.++.
T Consensus 303 ~l~~ 306 (388)
T 3pe7_A 303 DAPV 306 (388)
T ss_dssp CC--
T ss_pred ccee
Confidence 7774
No 175
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=99.71 E-value=3.5e-13 Score=110.69 Aligned_cols=263 Identities=11% Similarity=0.043 Sum_probs=170.5
Q ss_pred ccCcCCcEEEEEecCC--EEEEccCCCcEEEEcCCcceeccc--CCCCCeeEEEEe--CCEEEEEeCCCeEEEEeecCCC
Q 047325 40 LVREEGHIYSLAASKD--LLYTGSDSKNIRVWKNLKEFCGFK--ASSGLVKAIVIS--GEKIFTGHQDGKIRVWKISPKN 113 (368)
Q Consensus 40 ~~~h~~~i~~~~~~~~--~l~s~~~dg~i~iw~~~~~~~~~~--~~~~~v~~~~~~--~~~l~s~~~dg~i~vw~~~~~~ 113 (368)
+..+...+.+++++++ ++++...++.|.+||.......+. .+...+.+++++ +..+++...++.|..|+.. ++
T Consensus 10 ~~~~~~~~~~i~~d~~g~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~ 88 (299)
T 2z2n_A 10 LTNQDTGPYGITVSDKGKVWITQHKANMISCINLDGKITEYPLPTPDAKVMCLTISSDGEVWFTENAANKIGRITKK-GI 88 (299)
T ss_dssp CCSSSCCEEEEEECTTSCEEEEETTTTEEEEECTTCCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SC
T ss_pred CCCcCCCccceEECCCCCEEEEecCCCcEEEEcCCCCeEEecCCcccCceeeEEECCCCCEEEeCCCCCeEEEECCC-Cc
Confidence 4445567899998755 555555578999999874443332 345678899987 5556655568889999875 22
Q ss_pred ccccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcCCCCEEEEEeCCCcEEEEEccCCeEEEE-e
Q 047325 114 QSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCGLLYTASWDRTFKVWRISDSKCLES-V 192 (368)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~-~ 192 (368)
. ..... ......+.++++.+++.++++...++.|..||. +++.... .
T Consensus 89 ~-~~~~~------------------------------~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~~~~~~ 136 (299)
T 2z2n_A 89 I-KEYTL------------------------------PNPDSAPYGITEGPNGDIWFTEMNGNRIGRITD-DGKIREYEL 136 (299)
T ss_dssp E-EEEEC------------------------------SSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEEEEEC
T ss_pred E-EEEeC------------------------------CCcCCCceeeEECCCCCEEEEecCCceEEEECC-CCCEEEecC
Confidence 1 00000 003356788999999988777777889999998 5554332 2
Q ss_pred ecCCCceEEEEeCCCC-eEEEEcCCCeEEEEEcCCCCCCcccccceeeccccccEEEEEEcCCCCEEEEecCCCcEEEEe
Q 047325 193 SAHDDAVNSVVSSSEG-LIFTGSADGTVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSSSRSIVYCGSSDGLVNFWE 271 (368)
Q Consensus 193 ~~~~~~v~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d 271 (368)
......+..+++.+++ .+++...++.|..||. .+.. ...........+..+++++++++.++...++.|..||
T Consensus 137 ~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~-----~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~ 210 (299)
T 2z2n_A 137 PNKGSYPSFITLGSDNALWFTENQNNAIGRITE-SGDI-----TEFKIPTPASGPVGITKGNDDALWFVEIIGNKIGRIT 210 (299)
T ss_dssp SSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCE-----EEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEEC
T ss_pred CCCCCCCceEEEcCCCCEEEEeCCCCEEEEEcC-CCcE-----EEeeCCCCCCcceeEEECCCCCEEEEccCCceEEEEC
Confidence 3344568999999998 5555556789999998 3311 0111223345688999999999877777788999999
Q ss_pred CCCccccceeeeccceEE--EEEEeCCCEEEEeeCCCeEEEEecCCCceeeeEeeeccccCeeEEEEecCCeeeec
Q 047325 272 REKQLSHGGVLKGHKLAV--LCLAAAGKLVFSGSADKTICVWRRDGAIHTCLSVLTGHTGPVKCLAVEEDRDSSSS 345 (368)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~ 345 (368)
. ++.........+...+ ++++++++++++...++.|..||.+ +. .....+..+...+.++++ +++.+.++
T Consensus 211 ~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~~-g~-~~~~~~~~~~~~~~~i~~-~~g~l~v~ 282 (299)
T 2z2n_A 211 T-SGEITEFKIPTPNARPHAITAGAGIDLWFTEWGANKIGRLTSN-NI-IEEYPIQIKSAEPHGICF-DGETIWFA 282 (299)
T ss_dssp T-TCCEEEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEEETT-TE-EEEEECSSSSCCEEEEEE-CSSCEEEE
T ss_pred C-CCcEEEEECCCCCCCceeEEECCCCCEEEeccCCceEEEECCC-Cc-eEEEeCCCCCCccceEEe-cCCCEEEE
Confidence 8 4433221122222333 4455677766666678899999874 31 122223345567999999 88885443
No 176
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=99.71 E-value=1.3e-14 Score=121.10 Aligned_cols=224 Identities=9% Similarity=0.039 Sum_probs=147.1
Q ss_pred CCCcEEEEcCCcc-ee-cc-cCCCCCeeEEEEe--CCEEEEEeCCCeEEEEeecCCC-ccccccCCccccceeeeeccCC
Q 047325 62 DSKNIRVWKNLKE-FC-GF-KASSGLVKAIVIS--GEKIFTGHQDGKIRVWKISPKN-QSVHKRAGTLPTLKDIFKSSIK 135 (368)
Q Consensus 62 ~dg~i~iw~~~~~-~~-~~-~~~~~~v~~~~~~--~~~l~s~~~dg~i~vw~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 135 (368)
.+++|.+||..+. +. .+ ..+-.....++++ ++.+++...++.|++|+.+... ...........
T Consensus 67 ~~~~i~~~d~~~g~~~~~~~~~~~~~p~gia~d~~g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~----------- 135 (329)
T 3fvz_A 67 EEDTILVIDPNNAEILQSSGKNLFYLPHGLSIDTDGNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQP----------- 135 (329)
T ss_dssp CSCCEEEECTTTCCEEEEECTTTCSSEEEEEECTTSCEEEEETTTTEEEEECTTCSSCCSEEESBTTBC-----------
T ss_pred cCCcEEEEECCCCeEEeccCCCccCCceEEEECCCCCEEEEECCCCEEEEEeCCCCeEEEEEecccCCC-----------
Confidence 3568999997632 22 22 2344578889998 6777777888999999976542 11111000000
Q ss_pred CCceeEecccceeeeeecCCCEeEEEEcC-CCCEEEEEe-CCCcEEEEEccCCeEEEEeecCC----------CceEEEE
Q 047325 136 PSNYIEVRRHRTALWIRHSDAVSCMSLDQ-DCGLLYTAS-WDRTFKVWRISDSKCLESVSAHD----------DAVNSVV 203 (368)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~-~d~~i~iwd~~~~~~~~~~~~~~----------~~v~~~~ 203 (368)
..-.++......++++| ++.++++.+ .++.|++|| .+++.+..+.... .....++
T Consensus 136 ------------g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~~~~-~~g~~~~~~~~~g~~~~~~~~~~~~p~gia 202 (329)
T 3fvz_A 136 ------------GSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRIVQFS-PSGKFVTQWGEESSGSSPRPGQFSVPHSLA 202 (329)
T ss_dssp ------------CCSTTCCSSEEEEEECTTTCCEEEEECSSCCEEEEEC-TTSCEEEEECEECCSSSCCTTEESCEEEEE
T ss_pred ------------CCCccccCCCcEEEEeCCCCeEEEEeCCCCCeEEEEc-CCCCEEEEeccCCCCCCCCCcccCCCcEEE
Confidence 00001445688999999 787777776 689999999 5677777664322 2378999
Q ss_pred eCCC-C-eEEEEcCCCeEEEEEcCCCCCCcccccceee--ccccccEEEEEEcC------CCCEEEEecCCCcEEEEeCC
Q 047325 204 SSSE-G-LIFTGSADGTVKVWKREQHGKGTKHSLAQTL--LKQECAVTALVVSS------SRSIVYCGSSDGLVNFWERE 273 (368)
Q Consensus 204 ~~~~-~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~--~~~~~~i~~~~~~~------~~~~l~~~~~dg~i~i~d~~ 273 (368)
++|+ + ++++...++.|++||..++. ....+ ..+...+..++++| +++..++...+..|++||..
T Consensus 203 ~d~~~g~l~v~d~~~~~I~~~~~~~G~------~~~~~~~~~~~~~~~~~~~~pg~~~~~~g~~~v~~~~~~~v~~~~~~ 276 (329)
T 3fvz_A 203 LVPHLDQLCVADRENGRIQCFKTDTKE------FVREIKHASFGRNVFAISYIPGFLFAVNGKPYFGDQEPVQGFVMNFS 276 (329)
T ss_dssp EETTTTEEEEEETTTTEEEEEETTTCC------EEEEECCTTTTTCEEEEEEETTEEEEEECCCCTTCSCCCCEEEEETT
T ss_pred EECCCCEEEEEECCCCEEEEEECCCCc------EEEEEeccccCCCcceeeecCCEEEEeCCCEEeccCCCcEEEEEEcC
Confidence 9998 6 66777788999999997442 22333 23456788899999 33333333445689999988
Q ss_pred Cccccceee--eccc--eEEEEEEeCCCEEEEeeCCCeEEEEecCC
Q 047325 274 KQLSHGGVL--KGHK--LAVLCLAAAGKLVFSGSADKTICVWRRDG 315 (368)
Q Consensus 274 ~~~~~~~~~--~~~~--~~~~~~~~~~~~l~~~~~dg~i~iw~~~~ 315 (368)
++....... ..+. ..-++++++|.++++...++.|++|+++.
T Consensus 277 ~g~~~~~~~~~~~~~~~p~~ia~~~dG~lyvad~~~~~I~~~~~~~ 322 (329)
T 3fvz_A 277 SGEIIDVFKPVRKHFDMPHDIVASEDGTVYIGDAHTNTVWKFTLTE 322 (329)
T ss_dssp TCCEEEEECCSSSCCSSEEEEEECTTSEEEEEESSSCCEEEEEEEE
T ss_pred CCeEEEEEcCCCCccCCeeEEEECCCCCEEEEECCCCEEEEEeCCc
Confidence 776553321 1222 23366778898888888899999998754
No 177
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=99.71 E-value=5.6e-15 Score=123.04 Aligned_cols=241 Identities=9% Similarity=0.025 Sum_probs=157.6
Q ss_pred cCCCcEEEEcCCcceec--c------cCCCCCeeEEEEeCCEEEEE-eCCCeEEEEeecCCCccccccCCccccceeeee
Q 047325 61 SDSKNIRVWKNLKEFCG--F------KASSGLVKAIVISGEKIFTG-HQDGKIRVWKISPKNQSVHKRAGTLPTLKDIFK 131 (368)
Q Consensus 61 ~~dg~i~iw~~~~~~~~--~------~~~~~~v~~~~~~~~~l~s~-~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~ 131 (368)
+.+++|.++|..+.... + .........+.+.++.++.+ ..++.|.+||..+++......
T Consensus 14 ~~~~~l~~~d~~t~~~~~~i~~~~n~~~lg~~~~~i~~~~~~lyv~~~~~~~v~viD~~t~~~~~~i~------------ 81 (328)
T 3dsm_A 14 YSNATLSYYDPATCEVENEVFYRANGFKLGDVAQSMVIRDGIGWIVVNNSHVIFAIDINTFKEVGRIT------------ 81 (328)
T ss_dssp SCCBEEEEEETTTTEEECSHHHHHHSSCCBSCEEEEEEETTEEEEEEGGGTEEEEEETTTCCEEEEEE------------
T ss_pred CCCceEEEEECCCCEEhhhhHhhhcCcccCccceEEEEECCEEEEEEcCCCEEEEEECcccEEEEEcC------------
Confidence 34889999998743221 1 11224467788886655554 457999999998876433221
Q ss_pred ccCCCCceeEecccceeeeeecCCCEeEEEEcCCCCEEEEEe-CCCcEEEEEccCCeEEEEeecCC-----CceEEEEeC
Q 047325 132 SSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCGLLYTAS-WDRTFKVWRISDSKCLESVSAHD-----DAVNSVVSS 205 (368)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d~~i~iwd~~~~~~~~~~~~~~-----~~v~~~~~~ 205 (368)
.......++++++++ ++++. .++.|.+||+.+++....+.... .....+++
T Consensus 82 ---------------------~~~~p~~i~~~~~g~-lyv~~~~~~~v~~iD~~t~~~~~~i~~g~~~~~~~~p~~i~~- 138 (328)
T 3dsm_A 82 ---------------------GFTSPRYIHFLSDEK-AYVTQIWDYRIFIINPKTYEITGYIECPDMDMESGSTEQMVQ- 138 (328)
T ss_dssp ---------------------CCSSEEEEEEEETTE-EEEEEBSCSEEEEEETTTTEEEEEEECTTCCTTTCBCCCEEE-
T ss_pred ---------------------CCCCCcEEEEeCCCe-EEEEECCCCeEEEEECCCCeEEEEEEcCCccccCCCcceEEE-
Confidence 235577899988884 55554 78999999999999887776433 14456666
Q ss_pred CCCeEEEEc--CCCeEEEEEcCCCCCCcccccceeeccccccEEEEEEcCCCCEEEEecCC----------CcEEEEeCC
Q 047325 206 SEGLIFTGS--ADGTVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSSSRSIVYCGSSD----------GLVNFWERE 273 (368)
Q Consensus 206 ~~~~l~~~~--~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d----------g~i~i~d~~ 273 (368)
.++.++++. .++.|.++|+.+.. ....+.. ......++++|++++++++..+ +.|.++|.+
T Consensus 139 ~~~~lyv~~~~~~~~v~viD~~t~~------~~~~i~~-g~~p~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~ 211 (328)
T 3dsm_A 139 YGKYVYVNCWSYQNRILKIDTETDK------VVDELTI-GIQPTSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAE 211 (328)
T ss_dssp ETTEEEEEECTTCCEEEEEETTTTE------EEEEEEC-SSCBCCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETT
T ss_pred ECCEEEEEcCCCCCEEEEEECCCCe------EEEEEEc-CCCccceEEcCCCCEEEEECCCccCCccccCCceEEEEECC
Confidence 455555554 48899999998652 2222222 2234678899999877776654 789999998
Q ss_pred Cccccceeee--ccceEEEEEEeCCCEEEEeeCCCeEEEEecCCCceeeeEeeeccccCeeEEEEec-CCeeeec
Q 047325 274 KQLSHGGVLK--GHKLAVLCLAAAGKLVFSGSADKTICVWRRDGAIHTCLSVLTGHTGPVKCLAVEE-DRDSSSS 345 (368)
Q Consensus 274 ~~~~~~~~~~--~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~l~~~~-~~~~~~~ 345 (368)
+.+....... +....-++++++++.|+++.. .|.+||..+........+.........++++| ++.+.++
T Consensus 212 t~~v~~~~~~~~g~~p~~la~~~d~~~lyv~~~--~v~~~d~~t~~~~~~~~~~~~~~~p~gi~vdp~~g~lyva 284 (328)
T 3dsm_A 212 TFTVEKQFKFKLGDWPSEVQLNGTRDTLYWINN--DIWRMPVEADRVPVRPFLEFRDTKYYGLTVNPNNGEVYVA 284 (328)
T ss_dssp TTEEEEEEECCTTCCCEEEEECTTSCEEEEESS--SEEEEETTCSSCCSSCSBCCCSSCEEEEEECTTTCCEEEE
T ss_pred CCeEEEEEecCCCCCceeEEEecCCCEEEEEcc--EEEEEECCCCceeeeeeecCCCCceEEEEEcCCCCeEEEE
Confidence 7654432222 223455778888998888765 89999987653211111222245789999999 4554343
No 178
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=99.71 E-value=1e-14 Score=119.89 Aligned_cols=222 Identities=14% Similarity=0.105 Sum_probs=148.8
Q ss_pred cccCCCCCeeEEEEe--CC-EEEEEeCCCeEEEEeecCCCccccccCCccccceeeeeccCCCCceeEecccceeeeeec
Q 047325 77 GFKASSGLVKAIVIS--GE-KIFTGHQDGKIRVWKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRH 153 (368)
Q Consensus 77 ~~~~~~~~v~~~~~~--~~-~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (368)
.+..+.....+++|+ ++ .++++..++.|..|+..++ . .. +..+
T Consensus 22 ~l~~~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~-~-~~--------------------------------~~~~ 67 (296)
T 3e5z_A 22 RLADGFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ-L-SP--------------------------------EMHP 67 (296)
T ss_dssp EEECCCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC-E-EE--------------------------------EESS
T ss_pred EEecCCccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC-e-EE--------------------------------EECC
Confidence 344455667788888 66 6788888999999998765 1 11 1114
Q ss_pred CCCEeEEEEcCCCCEEEEEeCCCcEEEEEccCCeEEEEeecC----CCceEEEEeCCCC-eEEE----Ec----------
Q 047325 154 SDAVSCMSLDQDCGLLYTASWDRTFKVWRISDSKCLESVSAH----DDAVNSVVSSSEG-LIFT----GS---------- 214 (368)
Q Consensus 154 ~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~----~~~v~~~~~~~~~-~l~~----~~---------- 214 (368)
...+.+++++++++++++...++.|.+||..+++........ ...+..+++.|+| ++++ |+
T Consensus 68 ~~~~~~l~~~~dg~l~v~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~ 147 (296)
T 3e5z_A 68 SHHQNGHCLNKQGHLIACSHGLRRLERQREPGGEWESIADSFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGE 147 (296)
T ss_dssp CSSEEEEEECTTCCEEEEETTTTEEEEECSTTCCEEEEECEETTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCC
T ss_pred CCCcceeeECCCCcEEEEecCCCeEEEEcCCCCcEEEEeeccCCCCCCCCCCEEECCCCCEEEECCcccccccccccccc
Confidence 567889999999998777766789999999888765443221 2346789999999 4554 32
Q ss_pred ---CCCeEEEEEcCCCCCCcccccceeeccccccEEEEEEcCCCCEEEEecCCCcEEEEeCC-Cccc-c-ceeeeccce-
Q 047325 215 ---ADGTVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSSSRSIVYCGSSDGLVNFWERE-KQLS-H-GGVLKGHKL- 287 (368)
Q Consensus 215 ---~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~-~~~~-~-~~~~~~~~~- 287 (368)
..+.|..++.. + . ......+......++|+|+++.+++.+.++.|.+|++. .+.. . ...+..+..
T Consensus 148 ~~~~~~~l~~~~~~-g-~------~~~~~~~~~~~~gi~~s~dg~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~ 219 (296)
T 3e5z_A 148 MELPGRWVFRLAPD-G-T------LSAPIRDRVKPNGLAFLPSGNLLVSDTGDNATHRYCLNARGETEYQGVHFTVEPGK 219 (296)
T ss_dssp CCSSSCEEEEECTT-S-C------EEEEECCCSSEEEEEECTTSCEEEEETTTTEEEEEEECSSSCEEEEEEEECCSSSC
T ss_pred ccCCCcEEEEECCC-C-C------EEEeecCCCCCccEEECCCCCEEEEeCCCCeEEEEEECCCCcCcCCCeEeeCCCCC
Confidence 13456666554 1 1 22333445567899999999988888888999999986 3322 0 111111111
Q ss_pred -EEEEEEeCCCEEEEeeCCCeEEEEecCCCceeeeEeeeccccCeeEEEE-ecCCeeeecC
Q 047325 288 -AVLCLAAAGKLVFSGSADKTICVWRRDGAIHTCLSVLTGHTGPVKCLAV-EEDRDSSSST 346 (368)
Q Consensus 288 -~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~l~~-~~~~~~~~~~ 346 (368)
.-++++++|+++++. ++.|.+|+.+. +.+..+..+.. +++++| .|++..|..+
T Consensus 220 p~~i~~d~~G~l~v~~--~~~v~~~~~~g---~~~~~~~~~~~-~~~~~f~~~d~~~L~v~ 274 (296)
T 3e5z_A 220 TDGLRVDAGGLIWASA--GDGVHVLTPDG---DELGRVLTPQT-TSNLCFGGPEGRTLYMT 274 (296)
T ss_dssp CCSEEEBTTSCEEEEE--TTEEEEECTTS---CEEEEEECSSC-CCEEEEESTTSCEEEEE
T ss_pred CCeEEECCCCCEEEEc--CCeEEEECCCC---CEEEEEECCCC-ceeEEEECCCCCEEEEE
Confidence 125677788866665 88999998763 45666666666 999999 5888754433
No 179
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=99.69 E-value=8.3e-15 Score=123.25 Aligned_cols=249 Identities=10% Similarity=0.084 Sum_probs=154.2
Q ss_pred EEEEEecCCEEEEc---------cCCCcEEEEcCCcce-ecccCCCCCeeEEEEe--CCEEEEEeCC---Ce--EEEEee
Q 047325 47 IYSLAASKDLLYTG---------SDSKNIRVWKNLKEF-CGFKASSGLVKAIVIS--GEKIFTGHQD---GK--IRVWKI 109 (368)
Q Consensus 47 i~~~~~~~~~l~s~---------~~dg~i~iw~~~~~~-~~~~~~~~~v~~~~~~--~~~l~s~~~d---g~--i~vw~~ 109 (368)
+..++++|+.++.. ..++.|.+||+.... ..+ ..+..+.|+ |++|+.++.+ +. |.+|++
T Consensus 17 ~~~~~~dG~~i~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l----~~~~~~~~SpDg~~la~~~~~~~~~~~~l~~~~~ 92 (347)
T 2gop_A 17 LSDPRTKGELVAYVLTKANLKDNKYENTIVIENLKNNARRFI----ENATMPRISPDGKKIAFMRANEEKKVSEIWVADL 92 (347)
T ss_dssp EEEEEEETTEEEEEEEEEETTTTEEEEEEEEEETTTCCEEEE----ESCEEEEECTTSSEEEEEEEETTTTEEEEEEEET
T ss_pred cccceECCcEEEEEEeecCcccCCccceEEEEeCCCCceEEc----ccCCCeEECCCCCEEEEEEeccCCCcceEEEEEC
Confidence 44445567655443 236789999987532 223 457788888 7788877654 34 666677
Q ss_pred cCCCccccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcCCCCEEEEEeCC--------------
Q 047325 110 SPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCGLLYTASWD-------------- 175 (368)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-------------- 175 (368)
.+++... +..+.. +..+.|+|+++.|+.++.+
T Consensus 93 ~~g~~~~---------------------------------l~~~~~-~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~~ 138 (347)
T 2gop_A 93 ETLSSKK---------------------------------ILEAKN-IRSLEWNEDSRKLLIVGFKRREDEDFIFEDDVP 138 (347)
T ss_dssp TTTEEEE---------------------------------EEEESE-EEEEEECTTSSEEEEEEECCCC---------CC
T ss_pred CCCceEE---------------------------------EEcCCC-ccceeECCCCCEEEEEEccCCCcCCcEEEcccc
Confidence 6543211 111233 8899999999988887642
Q ss_pred -------------CcEEEEEccCCeEEEEeecCCCceEEEEeCCCCeEEEEcCC------C-eEEEEEcCCCCCCccccc
Q 047325 176 -------------RTFKVWRISDSKCLESVSAHDDAVNSVVSSSEGLIFTGSAD------G-TVKVWKREQHGKGTKHSL 235 (368)
Q Consensus 176 -------------~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d------g-~i~i~d~~~~~~~~~~~~ 235 (368)
..|.+||+.+++.+..+.. . .+..+.|+|++.++++..+ . ...+|.++ .+.
T Consensus 139 ~~~~g~~~~~~~~~~l~~~d~~~~~~~~~l~~-~-~~~~~~~spdg~~~~~~~~~~~~~~~~~~~l~~~d-~~~------ 209 (347)
T 2gop_A 139 AWFDDLGFFDGEKTTFWIFDTESEEVIEEFEK-P-RFSSGIWHRDKIVVNVPHREIIPQYFKFWDIYIWE-DGK------ 209 (347)
T ss_dssp CC---------CEEEEEEEETTTTEEEEEEEE-E-TTCEEEEETTEEEEEEECCCSSCCSSCCEEEEEEE-TTE------
T ss_pred eeecCcccccCccceEEEEECCCCeEEeeecC-C-CcccccCCCCeEEEEEecccccccccccccEEEeC-CCc------
Confidence 5799999998887455554 3 7889999999944455433 2 34455444 211
Q ss_pred ceeeccccccEEEEEEcCCCCEEEEecCC--------CcEEEEeCCCccccceeeeccceEE---EEEEeCCCEEEEeeC
Q 047325 236 AQTLLKQECAVTALVVSSSRSIVYCGSSD--------GLVNFWEREKQLSHGGVLKGHKLAV---LCLAAAGKLVFSGSA 304 (368)
Q Consensus 236 ~~~~~~~~~~i~~~~~~~~~~~l~~~~~d--------g~i~i~d~~~~~~~~~~~~~~~~~~---~~~~~~~~~l~~~~~ 304 (368)
...+..+ ..+..+ +|+|+.|+.++.+ ..|.+|| ++.. ......+...+ ..++ ++ ++++++.
T Consensus 210 ~~~l~~~-~~~~~~--spdg~~l~~~~~~~~~~~~~~~~l~~~d--~~~~-~~l~~~~~~~~~~~~~~s-dg-~~~~~~~ 281 (347)
T 2gop_A 210 EEKMFEK-VSFYAV--DSDGERILLYGKPEKKYMSEHNKLYIYD--GKEV-MGILDEVDRGVGQAKIKD-GK-VYFTLFE 281 (347)
T ss_dssp EEEEEEE-ESEEEE--EECSSCEEEEECCSSSCCCSSCEEEEEC--SSCE-EESSTTCCSEEEEEEEET-TE-EEEEEEE
T ss_pred eEEeccC-cceeeE--CCCCCEEEEEEccccCCccccceEEEEC--CCce-EeccccCCcccCCccEEc-Cc-EEEEEec
Confidence 1222223 445444 8999988877644 4688888 3322 22333444444 3455 66 8899999
Q ss_pred CCeEEEEecCCCceeeeEeeeccccCeeEEEEecCCeeeecC-Ccc-eEEEEE
Q 047325 305 DKTICVWRRDGAIHTCLSVLTGHTGPVKCLAVEEDRDSSSST-SSC-AQRWIV 355 (368)
Q Consensus 305 dg~i~iw~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~-~~~-~~~w~l 355 (368)
++.+++| ++.+ .. ..+..+...|.+++|+| ...++.. ... ..+|.+
T Consensus 282 ~~~~~l~-~~~g--~~-~~~~~~~~~v~~~~~s~-~~~~~~~~~~~~~~l~~~ 329 (347)
T 2gop_A 282 EGSVNLY-IWDG--EI-KPIAKGRHWIMGFDVDE-IVVYLKETATRLRELFTW 329 (347)
T ss_dssp TTEEEEE-EESS--SE-EEEECSSSEEEEEEESS-SEEEEEECSSSCCEEEEE
T ss_pred CCcEEEE-EcCC--ce-EEEecCCCeEEeeeeeC-cEEEEEcCCCChHHheEe
Confidence 9999999 8743 33 33344577899999999 4433322 222 366665
No 180
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=99.68 E-value=8e-15 Score=118.59 Aligned_cols=216 Identities=8% Similarity=-0.003 Sum_probs=151.5
Q ss_pred CCEEEEEeCCCeEEEEeecCCCccccccCCccccceeeeeccCCCCceeEecccceeeeeecC-CCEeEEEEcCCCCEEE
Q 047325 92 GEKIFTGHQDGKIRVWKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHS-DAVSCMSLDQDCGLLY 170 (368)
Q Consensus 92 ~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~ 170 (368)
++.|++++.|+.|.+||.++++....... +. ..+.++.+.|+|++++
T Consensus 5 ~~~lv~~~~~~~v~~~d~~tG~~~w~~~~--------------------------------~~~~~~~~~~~~pdG~ilv 52 (276)
T 3no2_A 5 QHLLVGGSGWNKIAIINKDTKEIVWEYPL--------------------------------EKGWECNSVAATKAGEILF 52 (276)
T ss_dssp CEEEEECTTCSEEEEEETTTTEEEEEEEC--------------------------------CTTCCCCEEEECTTSCEEE
T ss_pred CcEEEeeCCCCEEEEEECCCCeEEEEeCC--------------------------------CccCCCcCeEECCCCCEEE
Confidence 56888999999999999988876544332 22 3578899999999888
Q ss_pred EEeCCCcEEEEEccCCeEEEEeecCC-CceEEEEeCCCC-eEEEEcC-CCeEEEEEcCCCCCCcccccceeeccccccEE
Q 047325 171 TASWDRTFKVWRISDSKCLESVSAHD-DAVNSVVSSSEG-LIFTGSA-DGTVKVWKREQHGKGTKHSLAQTLLKQECAVT 247 (368)
Q Consensus 171 ~~~~d~~i~iwd~~~~~~~~~~~~~~-~~v~~~~~~~~~-~l~~~~~-dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~i~ 247 (368)
+.++.|..||. +++.+..+..+. ..+.++.+.++| .+++.+. ++.+..+|.. ++.............+.....
T Consensus 53 --s~~~~V~~~d~-~G~~~W~~~~~~~~~~~~~~~~~dG~~lv~~~~~~~~v~~vd~~-Gk~l~~~~~~~~~~~~~~~~~ 128 (276)
T 3no2_A 53 --SYSKGAKMITR-DGRELWNIAAPAGCEMQTARILPDGNALVAWCGHPSTILEVNMK-GEVLSKTEFETGIERPHAQFR 128 (276)
T ss_dssp --ECBSEEEEECT-TSCEEEEEECCTTCEEEEEEECTTSCEEEEEESTTEEEEEECTT-SCEEEEEEECCSCSSGGGSCS
T ss_pred --eCCCCEEEECC-CCCEEEEEcCCCCccccccEECCCCCEEEEecCCCCEEEEEeCC-CCEEEEEeccCCCCccccccc
Confidence 35678999999 899999888653 578889999999 6666665 6777777753 211111111001112223445
Q ss_pred EEEEcCCCCEEEEecCCCcEEEEeCCCccccceeeeccceEEEEEEeCCCEEEEeeCCCeEEEEecCCCceeeeEeeecc
Q 047325 248 ALVVSSSRSIVYCGSSDGLVNFWEREKQLSHGGVLKGHKLAVLCLAAAGKLVFSGSADKTICVWRRDGAIHTCLSVLTGH 327 (368)
Q Consensus 248 ~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h 327 (368)
.++..++++++++...++.|..||.+ ++.................++++++++++.++.|..+|.+++ +.+.++..+
T Consensus 129 ~v~~~~~G~~lv~~~~~~~v~~~d~~-G~~~w~~~~~~~~~~~~~~~~g~~~v~~~~~~~v~~~d~~tG--~~~w~~~~~ 205 (276)
T 3no2_A 129 QINKNKKGNYLVPLFATSEVREIAPN-GQLLNSVKLSGTPFSSAFLDNGDCLVACGDAHCFVQLNLESN--RIVRRVNAN 205 (276)
T ss_dssp CCEECTTSCEEEEETTTTEEEEECTT-SCEEEEEECSSCCCEEEECTTSCEEEECBTTSEEEEECTTTC--CEEEEEEGG
T ss_pred CceECCCCCEEEEecCCCEEEEECCC-CCEEEEEECCCCccceeEcCCCCEEEEeCCCCeEEEEeCcCC--cEEEEecCC
Confidence 56788999999999999999999988 665543332222222445568999999998999999987765 666666543
Q ss_pred c------cCeeEEEEecCCeeeecC
Q 047325 328 T------GPVKCLAVEEDRDSSSST 346 (368)
Q Consensus 328 ~------~~v~~l~~~~~~~~~~~~ 346 (368)
. ..+..++..++|.++++.
T Consensus 206 ~~~~~~l~~~~~~~~~~~G~i~v~~ 230 (276)
T 3no2_A 206 DIEGVQLFFVAQLFPLQNGGLYICN 230 (276)
T ss_dssp GSBSCCCSEEEEEEECTTSCEEEEE
T ss_pred CCCCccccccccceEcCCCCEEEEe
Confidence 2 227888889999876655
No 181
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=99.67 E-value=6.4e-13 Score=111.04 Aligned_cols=239 Identities=11% Similarity=0.031 Sum_probs=152.6
Q ss_pred CCceeeeccCcCCcEEEEEecCC--EEEEccCCCcEEEEcCCcc-eecc-cCCCCCeeEEEEe--CCEEEEEeCC----C
Q 047325 33 QNGLIGSLVREEGHIYSLAASKD--LLYTGSDSKNIRVWKNLKE-FCGF-KASSGLVKAIVIS--GEKIFTGHQD----G 102 (368)
Q Consensus 33 ~~~~~~~~~~h~~~i~~~~~~~~--~l~s~~~dg~i~iw~~~~~-~~~~-~~~~~~v~~~~~~--~~~l~s~~~d----g 102 (368)
..+....+..+...+.+++|+++ +++++..++.|.+||.... ...+ ..+...+.+++++ ++.+++...+ +
T Consensus 33 ~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~dg~l~v~~~~~~~~~~ 112 (333)
T 2dg1_A 33 TAEPWLEISKKGLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPFVSHKANPAAIKIHKDGRLFVCYLGDFKSTG 112 (333)
T ss_dssp ECEEEEEEESSCCCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECSSSSEEEEEECTTSCEEEEECTTSSSCC
T ss_pred ccceeEEEeccCccccCcEECCCCCEEEEECCCCEEEEEeCCCCcEEEEeeCCCCCcceEEECCCCcEEEEeCCCCCCCc
Confidence 34455667777778899999754 6778888999999998643 2222 2466789999997 5556665555 6
Q ss_pred eEEEEeecCCCccccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcCCCCEEEEEeC------CC
Q 047325 103 KIRVWKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCGLLYTASW------DR 176 (368)
Q Consensus 103 ~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~------d~ 176 (368)
.|.+||.+++......... .+...+.+++++|+++++++... .+
T Consensus 113 ~i~~~d~~~~~~~~~~~~~------------------------------~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~ 162 (333)
T 2dg1_A 113 GIFAATENGDNLQDIIEDL------------------------------STAYCIDDMVFDSKGGFYFTDFRGYSTNPLG 162 (333)
T ss_dssp EEEEECTTSCSCEEEECSS------------------------------SSCCCEEEEEECTTSCEEEEECCCBTTBCCE
T ss_pred eEEEEeCCCCEEEEEEccC------------------------------ccCCcccceEECCCCCEEEEeccccccCCCc
Confidence 8999998766532111000 03356889999999987776653 35
Q ss_pred cEEEEEccCCeEEEEeecCCCceEEEEeCCCC-eE-EEEcCCCeEEEEEcCCCCCCcc-c--ccceeeccccccEEEEEE
Q 047325 177 TFKVWRISDSKCLESVSAHDDAVNSVVSSSEG-LI-FTGSADGTVKVWKREQHGKGTK-H--SLAQTLLKQECAVTALVV 251 (368)
Q Consensus 177 ~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l-~~~~~dg~i~i~d~~~~~~~~~-~--~~~~~~~~~~~~i~~~~~ 251 (368)
.|..+|..+++..... .....+..++++|++ .+ ++...++.|.+||++....... . ........+ ..+..+++
T Consensus 163 ~l~~~~~~~~~~~~~~-~~~~~~~~i~~~~dg~~l~v~~~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~-~~~~~i~~ 240 (333)
T 2dg1_A 163 GVYYVSPDFRTVTPII-QNISVANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGH-EGPDSCCI 240 (333)
T ss_dssp EEEEECTTSCCEEEEE-EEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSS-SEEEEEEE
T ss_pred eEEEEeCCCCEEEEee-cCCCcccceEECCCCCEEEEEeCCCCeEEEEEecCCCcCcccccceEEEecCCC-CCCCceEE
Confidence 6777776655543322 233457889999998 45 4555688999999964221000 0 000111111 46788999
Q ss_pred cCCCCEEEEecCCCcEEEEeCCCccccceeeecc--------ceEEEEEEeCCCEEEEeeCC
Q 047325 252 SSSRSIVYCGSSDGLVNFWEREKQLSHGGVLKGH--------KLAVLCLAAAGKLVFSGSAD 305 (368)
Q Consensus 252 ~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~--------~~~~~~~~~~~~~l~~~~~d 305 (368)
++++++.++...++.|.+||.+. ... ..+..+ ...-.+++++++.|+.++.+
T Consensus 241 d~~G~l~v~~~~~~~v~~~d~~g-~~~-~~~~~~~~~~g~~~~~~~~~~~~dg~~L~v~~~~ 300 (333)
T 2dg1_A 241 DSDDNLYVAMYGQGRVLVFNKRG-YPI-GQILIPGRDEGHMLRSTHPQFIPGTNQLIICSND 300 (333)
T ss_dssp BTTCCEEEEEETTTEEEEECTTS-CEE-EEEECTTGGGTCSCBCCEEEECTTSCEEEEEEEC
T ss_pred CCCCCEEEEEcCCCEEEEECCCC-CEE-EEEEcCCCccccccCcceEEECCCCCEEEEEeCc
Confidence 99999888877788999999853 322 222222 12335566787777666555
No 182
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=99.67 E-value=2.5e-14 Score=115.81 Aligned_cols=179 Identities=8% Similarity=0.008 Sum_probs=118.5
Q ss_pred CCEeEEEEcCCCCEEEEEeCCCcEEEEEccCCeEEEEeecCCCceEEEEeCCCC-eEEEEcCCCeEEEEEcCCCCCCccc
Q 047325 155 DAVSCMSLDQDCGLLYTASWDRTFKVWRISDSKCLESVSAHDDAVNSVVSSSEG-LIFTGSADGTVKVWKREQHGKGTKH 233 (368)
Q Consensus 155 ~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~ 233 (368)
..+.+++++++++++++.. ++.|.+||................+..+++.+++ .+++...++.|.+|+......
T Consensus 67 ~~p~~i~~~~~g~l~v~~~-~~~i~~~d~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~---- 141 (270)
T 1rwi_B 67 YQPQGLAVDGAGTVYVTDF-NNRVVTLAAGSNNQTVLPFDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQ---- 141 (270)
T ss_dssp CSCCCEEECTTCCEEEEET-TTEEEEECTTCSCCEECCCCSCSSEEEEEECTTCCEEEEEGGGTEEEEECTTCCSC----
T ss_pred CCcceeEECCCCCEEEEcC-CCEEEEEeCCCceEeeeecCCcCCCcceEECCCCCEEEEECCCCEEEEEECCCcee----
Confidence 4567899999988665555 8899999987654332222233568899999998 555556788999997543211
Q ss_pred ccceeeccccccEEEEEEcCCCCEEEEecCCCcEEEEeCCCccccceeeec-cceEEEEEEeCCCEEEEeeCCCeEEEEe
Q 047325 234 SLAQTLLKQECAVTALVVSSSRSIVYCGSSDGLVNFWEREKQLSHGGVLKG-HKLAVLCLAAAGKLVFSGSADKTICVWR 312 (368)
Q Consensus 234 ~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~dg~i~iw~ 312 (368)
..........+..++++++++++++...++.|.+||............. ....-+++++++.++++...++.|.+|+
T Consensus 142 --~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~ 219 (270)
T 1rwi_B 142 --TVLPFTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAESNNQVVLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLL 219 (270)
T ss_dssp --EECCCCSCCSCCCEEECTTCCEEEEEGGGTEEEEECTTTCCEEECCCSSCCSEEEEEECTTCCEEEEETTTSCEEEEC
T ss_pred --EeeccccCCCceeEEEeCCCCEEEEECCCCEEEEEecCCCceEeecccCCCCceEEEECCCCCEEEEECCCCcEEEEc
Confidence 1111122235678999999998887777889999998765433211111 2223355666787777777788999998
Q ss_pred cCCCceeeeEeeeccccCeeEEEEecCCee
Q 047325 313 RDGAIHTCLSVLTGHTGPVKCLAVEEDRDS 342 (368)
Q Consensus 313 ~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~ 342 (368)
.+... .......+...+.+++++++|.+
T Consensus 220 ~~~~~--~~~~~~~~~~~p~~i~~~~~g~l 247 (270)
T 1rwi_B 220 AGSTT--STVLPFTGLNTPLAVAVDSDRTV 247 (270)
T ss_dssp TTCSC--CEECCCCSCSCEEEEEECTTCCE
T ss_pred CCCCc--ceeeccCCCCCceeEEECCCCCE
Confidence 86542 22222233457899999999984
No 183
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=99.67 E-value=2.9e-14 Score=117.15 Aligned_cols=247 Identities=10% Similarity=0.067 Sum_probs=160.7
Q ss_pred CCCceeeeccCcCCcEEEEEecC--C-EEEEccCCCcEEEEcCCcceecccCCCCCeeEEEEe--CCEEEEEeCCCeEEE
Q 047325 32 PQNGLIGSLVREEGHIYSLAASK--D-LLYTGSDSKNIRVWKNLKEFCGFKASSGLVKAIVIS--GEKIFTGHQDGKIRV 106 (368)
Q Consensus 32 ~~~~~~~~~~~h~~~i~~~~~~~--~-~l~s~~~dg~i~iw~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~v 106 (368)
..+..+..+..+.....+++|++ + +++++..++.|..||.......+..+...+.+++++ ++.+++...++.|.+
T Consensus 15 ~~~~~~~~l~~~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~~~~dg~l~v~~~~~~~i~~ 94 (296)
T 3e5z_A 15 PAGAEARRLADGFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQLSPEMHPSHHQNGHCLNKQGHLIACSHGLRRLER 94 (296)
T ss_dssp CTTCCCEEEECCCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSCEEEEESSCSSEEEEEECTTCCEEEEETTTTEEEE
T ss_pred CCCCcEEEEecCCccccCCeEeCCCCEEEEEeCCCCEEEEEECCCCeEEEECCCCCcceeeECCCCcEEEEecCCCeEEE
Confidence 34444555666667788888874 4 788888999999999886666677777889999997 666666656789999
Q ss_pred EeecCCCccccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcCCCCEEEEE----e---------
Q 047325 107 WKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCGLLYTA----S--------- 173 (368)
Q Consensus 107 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~----~--------- 173 (368)
||..+++......... ......+..++++|+|+++++. +
T Consensus 95 ~d~~~g~~~~~~~~~~----------------------------~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~ 146 (296)
T 3e5z_A 95 QREPGGEWESIADSFE----------------------------GKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGG 146 (296)
T ss_dssp ECSTTCCEEEEECEET----------------------------TEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCC
T ss_pred EcCCCCcEEEEeeccC----------------------------CCCCCCCCCEEECCCCCEEEECCccccccccccccc
Confidence 9987665321110000 0022456789999999988873 2
Q ss_pred ----CCCcEEEEEccCCeEEEEeecCCCceEEEEeCCCC-eEEEEcCCCeEEEEEcCCCCCCcccccceeeccccccEEE
Q 047325 174 ----WDRTFKVWRISDSKCLESVSAHDDAVNSVVSSSEG-LIFTGSADGTVKVWKREQHGKGTKHSLAQTLLKQECAVTA 248 (368)
Q Consensus 174 ----~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~i~~ 248 (368)
..+.|..+|.. ++. ..+..+......++|+|++ .+++.+.++.|.+||+...+.... ....+..+...+..
T Consensus 147 ~~~~~~~~l~~~~~~-g~~-~~~~~~~~~~~gi~~s~dg~~lv~~~~~~~i~~~~~~~~g~~~~--~~~~~~~~~~~p~~ 222 (296)
T 3e5z_A 147 EMELPGRWVFRLAPD-GTL-SAPIRDRVKPNGLAFLPSGNLLVSDTGDNATHRYCLNARGETEY--QGVHFTVEPGKTDG 222 (296)
T ss_dssp CCCSSSCEEEEECTT-SCE-EEEECCCSSEEEEEECTTSCEEEEETTTTEEEEEEECSSSCEEE--EEEEECCSSSCCCS
T ss_pred cccCCCcEEEEECCC-CCE-EEeecCCCCCccEEECCCCCEEEEeCCCCeEEEEEECCCCcCcC--CCeEeeCCCCCCCe
Confidence 13456666655 443 3444566677899999999 667778889999999973221100 01111224455678
Q ss_pred EEEcCCCCEEEEecCCCcEEEEeCCCccccceeeeccce-EEEEEE-eCCCEEEEeeCCCeEEEEecCC
Q 047325 249 LVVSSSRSIVYCGSSDGLVNFWEREKQLSHGGVLKGHKL-AVLCLA-AAGKLVFSGSADKTICVWRRDG 315 (368)
Q Consensus 249 ~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~-~~~~~~-~~~~~l~~~~~dg~i~iw~~~~ 315 (368)
++++++|++.++. ++.|.+||.+. +.. ..+..+.. ...++. ++++.|++++.++ +..++..+
T Consensus 223 i~~d~~G~l~v~~--~~~v~~~~~~g-~~~-~~~~~~~~~~~~~f~~~d~~~L~v~t~~~-l~~~~~~~ 286 (296)
T 3e5z_A 223 LRVDAGGLIWASA--GDGVHVLTPDG-DEL-GRVLTPQTTSNLCFGGPEGRTLYMTVSTE-FWSIETNV 286 (296)
T ss_dssp EEEBTTSCEEEEE--TTEEEEECTTS-CEE-EEEECSSCCCEEEEESTTSCEEEEEETTE-EEEEECSC
T ss_pred EEECCCCCEEEEc--CCeEEEECCCC-CEE-EEEECCCCceeEEEECCCCCEEEEEcCCe-EEEEEccc
Confidence 9999999876666 78899999873 333 23333332 234553 6788888888764 43444433
No 184
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=99.66 E-value=1.2e-13 Score=111.73 Aligned_cols=231 Identities=6% Similarity=-0.003 Sum_probs=152.7
Q ss_pred cEEEEEecCC--EEE-EccCCCcEEEEcCCcceecc--cCCCCCeeEEEEe--CCEEEEEeCCCeEEEEeecCCCccccc
Q 047325 46 HIYSLAASKD--LLY-TGSDSKNIRVWKNLKEFCGF--KASSGLVKAIVIS--GEKIFTGHQDGKIRVWKISPKNQSVHK 118 (368)
Q Consensus 46 ~i~~~~~~~~--~l~-s~~~dg~i~iw~~~~~~~~~--~~~~~~v~~~~~~--~~~l~s~~~dg~i~vw~~~~~~~~~~~ 118 (368)
...+++++++ +++ +.+.++.|.+||........ ..+...+.+++++ ++ |+.+..++.|.+||..........
T Consensus 25 ~p~~i~~~~~g~l~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~-l~v~~~~~~i~~~d~~~~~~~~~~ 103 (270)
T 1rwi_B 25 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQPQGLAVDGAGT-VYVTDFNNRVVTLAAGSNNQTVLP 103 (270)
T ss_dssp CEEEEEECTTCCEEEEECSSSCEEEEECC-----EECCCCSCCSCCCEEECTTCC-EEEEETTTEEEEECTTCSCCEECC
T ss_pred CccceEECCCCCEEEEccCCCCcEEEecCCCcccceEeeCCcCCcceeEECCCCC-EEEEcCCCEEEEEeCCCceEeeee
Confidence 6678888644 555 55778999999976433222 2333567788887 45 444444889999997654321110
Q ss_pred cCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcCCCCEEEEEeCCCcEEEEEccCCeEEEEeecCCCc
Q 047325 119 RAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCGLLYTASWDRTFKVWRISDSKCLESVSAHDDA 198 (368)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~ 198 (368)
. .....+.+++++++++++++...++.|.+||..+.............
T Consensus 104 -~-------------------------------~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 151 (270)
T 1rwi_B 104 -F-------------------------------DGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLPFTGLND 151 (270)
T ss_dssp -C-------------------------------CSCSSEEEEEECTTCCEEEEEGGGTEEEEECTTCCSCEECCCCSCCS
T ss_pred -c-------------------------------CCcCCCcceEECCCCCEEEEECCCCEEEEEECCCceeEeeccccCCC
Confidence 0 02246789999999987777777889999987655443322233346
Q ss_pred eEEEEeCCCC-eEEEEcCCCeEEEEEcCCCCCCcccccceeeccccccEEEEEEcCCCCEEEEecCCCcEEEEeCCCccc
Q 047325 199 VNSVVSSSEG-LIFTGSADGTVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSSSRSIVYCGSSDGLVNFWEREKQLS 277 (368)
Q Consensus 199 v~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~ 277 (368)
+.++++.+++ .+++...++.|.+||...... ..........+..++++++++++++...++.|.+||......
T Consensus 152 p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~------~~~~~~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~~~ 225 (270)
T 1rwi_B 152 PDGVAVDNSGNVYVTDTDNNRVVKLEAESNNQ------VVLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTS 225 (270)
T ss_dssp CCCEEECTTCCEEEEEGGGTEEEEECTTTCCE------EECCCSSCCSEEEEEECTTCCEEEEETTTSCEEEECTTCSCC
T ss_pred ceeEEEeCCCCEEEEECCCCEEEEEecCCCce------EeecccCCCCceEEEECCCCCEEEEECCCCcEEEEcCCCCcc
Confidence 7889999988 555556678999999875421 111122225688999999998888887888999999876433
Q ss_pred cceeeecc--ceEEEEEEeCCCEEEEeeCCCeEEEEecCCC
Q 047325 278 HGGVLKGH--KLAVLCLAAAGKLVFSGSADKTICVWRRDGA 316 (368)
Q Consensus 278 ~~~~~~~~--~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~ 316 (368)
.. ....+ ...-++++++++++++...++.|+++++...
T Consensus 226 ~~-~~~~~~~~p~~i~~~~~g~l~v~~~~~~~v~~~~~~~~ 265 (270)
T 1rwi_B 226 TV-LPFTGLNTPLAVAVDSDRTVYVADRGNDRVVKLTSLEH 265 (270)
T ss_dssp EE-CCCCSCSCEEEEEECTTCCEEEEEGGGTEEEEECCCGG
T ss_pred ee-eccCCCCCceeEEECCCCCEEEEECCCCEEEEEcCCCc
Confidence 22 11122 2233566678888888889999999987654
No 185
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=99.66 E-value=1.2e-13 Score=122.53 Aligned_cols=252 Identities=9% Similarity=0.018 Sum_probs=171.6
Q ss_pred CEEEEccCCCcEEEEcCCcc--eecccCCCCCeeEEEEe--CCEEEEEeCCCeEEEEeec--CCCccccccCCcccccee
Q 047325 55 DLLYTGSDSKNIRVWKNLKE--FCGFKASSGLVKAIVIS--GEKIFTGHQDGKIRVWKIS--PKNQSVHKRAGTLPTLKD 128 (368)
Q Consensus 55 ~~l~s~~~dg~i~iw~~~~~--~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~vw~~~--~~~~~~~~~~~~~~~~~~ 128 (368)
.++++...+++|.++|..+. +..+.. ...+..+.++ ++++++++.|+.|.+||+. +.+......
T Consensus 168 ~~~V~~~~~~~V~viD~~t~~v~~~i~~-g~~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~v~~i~--------- 237 (567)
T 1qks_A 168 LFSVTLRDAGQIALIDGSTYEIKTVLDT-GYAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIK--------- 237 (567)
T ss_dssp EEEEEETTTTEEEEEETTTCCEEEEEEC-SSCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEE---------
T ss_pred eEEEEeCCCCeEEEEECCCCeEEEEEeC-CCCccceEECCCCCEEEEEcCCCeEEEEECCCCCCcEeEEEe---------
Confidence 37788888999999998753 333332 2345678887 8899999999999999985 443221111
Q ss_pred eeeccCCCCceeEecccceeeeeecCCCEeEEEEc----CCCCEEEEEeC-CCcEEEEEccCCeEEEEeecC--------
Q 047325 129 IFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLD----QDCGLLYTASW-DRTFKVWRISDSKCLESVSAH-------- 195 (368)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~----~~~~~l~~~~~-d~~i~iwd~~~~~~~~~~~~~-------- 195 (368)
.......++|+ |+|++++++.. ++.|.++|..+.+++..+...
T Consensus 238 ------------------------~G~~P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~ 293 (567)
T 1qks_A 238 ------------------------IGSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQE 293 (567)
T ss_dssp ------------------------CCSEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCC
T ss_pred ------------------------cCCCCceeEEccccCCCCCEEEEEEccCCeEEEEECCCCcEEEEEecccccccccc
Confidence 12235689999 69998887765 589999999999988876532
Q ss_pred ---CCceEEEEeCCCC--eEEEEcCCCeEEEEEcCCCCCCcccccceeeccccccEEEEEEcCCCCEEEEec-CCCcEEE
Q 047325 196 ---DDAVNSVVSSSEG--LIFTGSADGTVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSSSRSIVYCGS-SDGLVNF 269 (368)
Q Consensus 196 ---~~~v~~~~~~~~~--~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~i~i 269 (368)
...+..+..++++ .++....+|.|.++|...... ..... .........+.|+|++++++++. .++.|.+
T Consensus 294 ~~p~~rva~i~~s~~~~~~vv~~~~~g~v~~vd~~~~~~----~~v~~-i~~~~~~~d~~~~pdgr~~~va~~~sn~V~V 368 (567)
T 1qks_A 294 YHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNN----LKTTE-ISAERFLHDGGLDGSHRYFITAANARNKLVV 368 (567)
T ss_dssp EESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSE----EEEEE-EECCSSEEEEEECTTSCEEEEEEGGGTEEEE
T ss_pred ccCCCceEEEEEcCCCCEEEEEecCCCeEEEEecCCCcc----ceeee-eeccccccCceECCCCCEEEEEeCCCCeEEE
Confidence 2257788888876 666667789999999875421 11111 22334567889999999876654 6789999
Q ss_pred EeCCCccccceeee----ccceEE-EEEEeCCC-EEEEee-CCCeEEEEecCCCc-----eeeeEeeeccccCeeEEEEe
Q 047325 270 WEREKQLSHGGVLK----GHKLAV-LCLAAAGK-LVFSGS-ADKTICVWRRDGAI-----HTCLSVLTGHTGPVKCLAVE 337 (368)
Q Consensus 270 ~d~~~~~~~~~~~~----~~~~~~-~~~~~~~~-~l~~~~-~dg~i~iw~~~~~~-----~~~~~~~~~h~~~v~~l~~~ 337 (368)
+|+.+++....... .|...- .-+.|++. ..+++. .++.|.++|.+... .+.++++......-..+..+
T Consensus 369 iD~~t~kl~~~i~vgg~~Phpg~g~~~~~p~~g~v~~t~~~g~~~Vsvid~~~~~~~~~~~kvv~~i~~~g~g~~~i~~~ 448 (567)
T 1qks_A 369 IDTKEGKLVAIEDTGGQTPHPGRGANFVHPTFGPVWATSHMGDDSVALIGTDPEGHPDNAWKILDSFPALGGGSLFIKTH 448 (567)
T ss_dssp EETTTTEEEEEEECSSSSBCCTTCEEEEETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECC
T ss_pred EECCCCcEEEEEeccCcCCCCccceeeECCCCCcEEEeCCCCCCeEEEecCCCCCCccccCEEEEEEecCCCCCEEEEeC
Confidence 99998765433322 343222 22567644 444443 57899999987632 35667776554444557889
Q ss_pred cCCeeeec
Q 047325 338 EDRDSSSS 345 (368)
Q Consensus 338 ~~~~~~~~ 345 (368)
|+++.+..
T Consensus 449 p~~~~l~v 456 (567)
T 1qks_A 449 PNSQYLYV 456 (567)
T ss_dssp TTCSEEEE
T ss_pred CCCCeEEE
Confidence 99986554
No 186
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=99.62 E-value=1.8e-11 Score=100.41 Aligned_cols=260 Identities=10% Similarity=0.074 Sum_probs=167.3
Q ss_pred cCCcEEEEEecCC--EEEEccCCCcEEEEcCCcceecc--cCCCCCeeEEEEe--CCEEEEEeCCCeEEEEeecCCCccc
Q 047325 43 EEGHIYSLAASKD--LLYTGSDSKNIRVWKNLKEFCGF--KASSGLVKAIVIS--GEKIFTGHQDGKIRVWKISPKNQSV 116 (368)
Q Consensus 43 h~~~i~~~~~~~~--~l~s~~~dg~i~iw~~~~~~~~~--~~~~~~v~~~~~~--~~~l~s~~~dg~i~vw~~~~~~~~~ 116 (368)
....+.+++++++ +.++...++.|.+||.......+ ..+...+.+++++ +..+++...++.|..+|.. ++...
T Consensus 18 ~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~v~~~d~~-g~~~~ 96 (300)
T 2qc5_A 18 PDSGPYGITSSEDGKVWFTQHKANKISSLDQSGRIKEFEVPTPDAKVMCLIVSSLGDIWFTENGANKIGKLSKK-GGFTE 96 (300)
T ss_dssp TTCCEEEEEECTTSCEEEEETTTTEEEEECTTSCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEE
T ss_pred CCCCcceeeECCCCCEEEEcCCCCeEEEECCCCceEEEECCCCCCcceeEEECCCCCEEEEecCCCeEEEECCC-CCeEE
Confidence 4567788888744 66666678899999977433332 2334678888887 5555555557889999876 43211
Q ss_pred cccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcCCCCEEEEEeCCCcEEEEEccCCeEEE-EeecC
Q 047325 117 HKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCGLLYTASWDRTFKVWRISDSKCLE-SVSAH 195 (368)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~-~~~~~ 195 (368)
... ......+.++++.++++++++...++.|..+|.. ++... .+...
T Consensus 97 -~~~------------------------------~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~ 144 (300)
T 2qc5_A 97 -YPL------------------------------PQPDSGPYGITEGLNGDIWFTQLNGDRIGKLTAD-GTIYEYDLPNK 144 (300)
T ss_dssp -EEC------------------------------SSTTCCEEEEEECSTTCEEEEETTTTEEEEECTT-SCEEEEECSST
T ss_pred -ecC------------------------------CCCCCCCccceECCCCCEEEEccCCCeEEEECCC-CCEEEccCCCC
Confidence 000 0023567889999999877777667899999987 65442 23334
Q ss_pred CCceEEEEeCCCC-eEEEEcCCCeEEEEEcCCCCCCcccccceeeccccccEEEEEEcCCCCEEEEecCCCcEEEEeCCC
Q 047325 196 DDAVNSVVSSSEG-LIFTGSADGTVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSSSRSIVYCGSSDGLVNFWEREK 274 (368)
Q Consensus 196 ~~~v~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~ 274 (368)
...+.++++.+++ .+++...++.|..+|.. ... ...........+..+++++++++.++....+.|.+||..
T Consensus 145 ~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~~-g~~-----~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~~- 217 (300)
T 2qc5_A 145 GSYPAFITLGSDNALWFTENQNNSIGRITNT-GKL-----EEYPLPTNAAAPVGITSGNDGALWFVEIMGNKIGRITTT- 217 (300)
T ss_dssp TCCEEEEEECTTSSEEEEETTTTEEEEECTT-CCE-----EEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECTT-
T ss_pred CCCceeEEECCCCCEEEEecCCCeEEEECCC-CcE-----EEeeCCCCCCCcceEEECCCCCEEEEccCCCEEEEEcCC-
Confidence 5678899999988 55555557899999983 211 111122334568899999999887777777889999983
Q ss_pred ccccceeeeccceEE--EEEEeCCCEEEEeeCCCeEEEEecCCCceeeeEeeeccccCeeEEEEecCCeeee
Q 047325 275 QLSHGGVLKGHKLAV--LCLAAAGKLVFSGSADKTICVWRRDGAIHTCLSVLTGHTGPVKCLAVEEDRDSSS 344 (368)
Q Consensus 275 ~~~~~~~~~~~~~~~--~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~ 344 (368)
+.........+.... +++++++++.++...++.|..|+.... .....+......+.+++++++|.+.+
T Consensus 218 g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~~g~--~~~~~~~~~~~~~~~i~~~~~g~l~v 287 (300)
T 2qc5_A 218 GEISEYDIPTPNARPHAITAGKNSEIWFTEWGANQIGRITNDNT--IQEYQLQTENAEPHGITFGKDGSVWF 287 (300)
T ss_dssp CCEEEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTTSC--EEEEECCSTTCCCCCEEECTTSCEEE
T ss_pred CcEEEEECCCCCCCceEEEECCCCCEEEeccCCCeEEEECCCCc--EEEEECCccCCccceeEeCCCCCEEE
Confidence 322211122222223 455567887776666789999987432 12222333456689999999998433
No 187
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=99.62 E-value=1.3e-13 Score=116.00 Aligned_cols=180 Identities=8% Similarity=0.107 Sum_probs=117.0
Q ss_pred CEeEEEEcCCCCEEEEEeCC---C--cEEEEEccCCeEEEEeecCCCceEEEEeCCCC-eEEEEcC--------------
Q 047325 156 AVSCMSLDQDCGLLYTASWD---R--TFKVWRISDSKCLESVSAHDDAVNSVVSSSEG-LIFTGSA-------------- 215 (368)
Q Consensus 156 ~v~~~~~~~~~~~l~~~~~d---~--~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~-------------- 215 (368)
.+..+.|+|||++|+.++.+ + .|.+||+.+++.......+ . +..+.|+|++ .|+.++.
T Consensus 60 ~~~~~~~SpDg~~la~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~-~-~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~ 137 (347)
T 2gop_A 60 NATMPRISPDGKKIAFMRANEEKKVSEIWVADLETLSSKKILEAK-N-IRSLEWNEDSRKLLIVGFKRREDEDFIFEDDV 137 (347)
T ss_dssp SCEEEEECTTSSEEEEEEEETTTTEEEEEEEETTTTEEEEEEEES-E-EEEEEECTTSSEEEEEEECCCC---------C
T ss_pred cCCCeEECCCCCEEEEEEeccCCCcceEEEEECCCCceEEEEcCC-C-ccceeECCCCCEEEEEEccCCCcCCcEEEccc
Confidence 46789999999999887754 2 4888899888776655543 3 8999999999 6666653
Q ss_pred -------------CCeEEEEEcCCCCCCcccccceeeccccccEEEEEEcCCCCEEEEecCCC-------cEEEEeCCCc
Q 047325 216 -------------DGTVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSSSRSIVYCGSSDG-------LVNFWEREKQ 275 (368)
Q Consensus 216 -------------dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg-------~i~i~d~~~~ 275 (368)
...|.+||+..+. ....+.. . .+..+.|+|++ +++++..++ ...+|.+.++
T Consensus 138 ~~~~~g~~~~~~~~~~l~~~d~~~~~------~~~~l~~-~-~~~~~~~spdg-~~~~~~~~~~~~~~~~~~~l~~~d~~ 208 (347)
T 2gop_A 138 PAWFDDLGFFDGEKTTFWIFDTESEE------VIEEFEK-P-RFSSGIWHRDK-IVVNVPHREIIPQYFKFWDIYIWEDG 208 (347)
T ss_dssp CCC---------CEEEEEEEETTTTE------EEEEEEE-E-TTCEEEEETTE-EEEEEECCCSSCCSSCCEEEEEEETT
T ss_pred ceeecCcccccCccceEEEEECCCCe------EEeeecC-C-CcccccCCCCe-EEEEEecccccccccccccEEEeCCC
Confidence 2578899987541 1122222 2 67789999999 777775542 3344443333
Q ss_pred cccceeeeccceEEEEEEeCCCEEEEeeCC--------CeEEEEecCCCceeeeEeeeccccCeeE-EEEecCCeeeecC
Q 047325 276 LSHGGVLKGHKLAVLCLAAAGKLVFSGSAD--------KTICVWRRDGAIHTCLSVLTGHTGPVKC-LAVEEDRDSSSST 346 (368)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d--------g~i~iw~~~~~~~~~~~~~~~h~~~v~~-l~~~~~~~~~~~~ 346 (368)
.. ..+..+ ..+..++|+|++|+.++.+ ..|.+|| ++ ........|...+.. +.|+ ++ +++++
T Consensus 209 ~~--~~l~~~-~~~~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d--~~--~~~~l~~~~~~~~~~~~~~s-dg-~~~~~ 279 (347)
T 2gop_A 209 KE--EKMFEK-VSFYAVDSDGERILLYGKPEKKYMSEHNKLYIYD--GK--EVMGILDEVDRGVGQAKIKD-GK-VYFTL 279 (347)
T ss_dssp EE--EEEEEE-ESEEEEEECSSCEEEEECCSSSCCCSSCEEEEEC--SS--CEEESSTTCCSEEEEEEEET-TE-EEEEE
T ss_pred ce--EEeccC-cceeeECCCCCEEEEEEccccCCccccceEEEEC--CC--ceEeccccCCcccCCccEEc-Cc-EEEEE
Confidence 22 122223 4455569999988877654 3677776 33 333344556677886 9999 88 55544
Q ss_pred --CcceEEEEEe
Q 047325 347 --SSCAQRWIVY 356 (368)
Q Consensus 347 --~~~~~~w~l~ 356 (368)
++..++| +-
T Consensus 280 ~~~~~~~l~-~~ 290 (347)
T 2gop_A 280 FEEGSVNLY-IW 290 (347)
T ss_dssp EETTEEEEE-EE
T ss_pred ecCCcEEEE-Ec
Confidence 3456777 54
No 188
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=99.62 E-value=1.2e-13 Score=116.52 Aligned_cols=190 Identities=10% Similarity=0.081 Sum_probs=117.4
Q ss_pred EEEEcCCCCEEEEEeC----------CCcEEEEEccCCeEEEEeecC------CCceEEEEeCCCC-eEEEEcC--CCeE
Q 047325 159 CMSLDQDCGLLYTASW----------DRTFKVWRISDSKCLESVSAH------DDAVNSVVSSSEG-LIFTGSA--DGTV 219 (368)
Q Consensus 159 ~~~~~~~~~~l~~~~~----------d~~i~iwd~~~~~~~~~~~~~------~~~v~~~~~~~~~-~l~~~~~--dg~i 219 (368)
.++++|++++++++.. ++.|.+||+.+++.+..+... ......++++|+| +|+++.. ++.|
T Consensus 54 ~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~~~i~~~~~~~~~g~~p~~i~~spdg~~l~v~n~~~~~~v 133 (361)
T 2oiz_A 54 HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLTFEKEISLPPKRVQGLNYDGLFRQTTDGKFIVLQNASPATSI 133 (361)
T ss_dssp EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCCEEEEEEECTTBCCBCCCGGGEEECTTSSEEEEEEESSSEEE
T ss_pred ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCCcEEEEEEcCccccccCCCcceEEECCCCCEEEEECCCCCCeE
Confidence 7999999999999863 567999999999988887643 2346788999999 7776653 6899
Q ss_pred EEEEcCCCCCCccccccee-ecccc--------------------ccEEEEEE---------------------------
Q 047325 220 KVWKREQHGKGTKHSLAQT-LLKQE--------------------CAVTALVV--------------------------- 251 (368)
Q Consensus 220 ~i~d~~~~~~~~~~~~~~~-~~~~~--------------------~~i~~~~~--------------------------- 251 (368)
.+||+..... ... +.... +.+..+.+
T Consensus 134 ~v~d~~~~~~------~~~~i~~~~~~~v~~~p~~~~~~~~~~~dg~~~~v~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 207 (361)
T 2oiz_A 134 GIVDVAKGDY------VEDVTAAAGCWSVIPQPNRPRSFMTICGDGGLLTINLGEDGKVASQSRSKQMFSVKDDPIFIAP 207 (361)
T ss_dssp EEEETTTTEE------EEEEGGGTTEEEEEECTTSSSEEEEEETTSSEEEEEECTTSSEEEEEECCCCSCTTTSCBCSCC
T ss_pred EEEECCCCcE------EEEEecCCCcceeEEcCCCCeeEEEECCCCcEEEEEECCCCcEeeeccccceEcCCCCceEEEe
Confidence 9999986522 111 11000 01111111
Q ss_pred cCCCCEEEEecCCCcEEEEeCCCccccc-eee------------eccceEEEEEEeCCCEEEEeeC-----------CCe
Q 047325 252 SSSRSIVYCGSSDGLVNFWEREKQLSHG-GVL------------KGHKLAVLCLAAAGKLVFSGSA-----------DKT 307 (368)
Q Consensus 252 ~~~~~~l~~~~~dg~i~i~d~~~~~~~~-~~~------------~~~~~~~~~~~~~~~~l~~~~~-----------dg~ 307 (368)
++++..++..+.++.+.++|+....... ... .......++++++++.++++.. ++.
T Consensus 208 ~~~g~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~a~~~dg~~lyv~~~~~~~~~~~~~~~~~ 287 (361)
T 2oiz_A 208 ALDKDKAHFVSYYGNVYSADFSGDEVKVDGPWSLLNDEDKAKNWVPGGYNLVGLHRASGRMYVFMHPDGKEGTHKFPAAE 287 (361)
T ss_dssp EECSSEEEEEBTTSEEEEEECSSSSCEEEEEEESCCHHHHHTTCEECCSSCEEEETTTTEEEEEEESSCCTTCTTCCCSE
T ss_pred cccCCEEEEEeCCCeEEEEEecCCCceecccccccCccccccccccCCeeEEEEecCCCeEEEEEccCCCcccccCCCce
Confidence 1122233333344556666654321110 000 0011112578888887776543 347
Q ss_pred EEEEecCCCceeeeEeeeccccCeeEEEEecCCeeeecCC-cceEEEEEeeC
Q 047325 308 ICVWRRDGAIHTCLSVLTGHTGPVKCLAVEEDRDSSSSTS-SCAQRWIVYSG 358 (368)
Q Consensus 308 i~iw~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~-~~~~~w~l~sg 358 (368)
|.+||+.+. +.+.++..+. +.+++|+|||+.+.+++ +.+.+|...++
T Consensus 288 v~viD~~t~--~~v~~i~~~~--p~~ia~spdg~~l~v~n~~~v~v~D~~t~ 335 (361)
T 2oiz_A 288 IWVMDTKTK--QRVARIPGRD--ALSMTIDQQRNLMLTLDGGNVNVYDISQP 335 (361)
T ss_dssp EEEEETTTT--EEEEEEECTT--CCEEEEETTTTEEEEECSSCEEEEECSSS
T ss_pred EEEEECCCC--cEEEEEecCC--eeEEEECCCCCEEEEeCCCeEEEEECCCC
Confidence 999998876 6778887776 99999999999665444 34555554443
No 189
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=99.61 E-value=2.6e-12 Score=106.96 Aligned_cols=250 Identities=9% Similarity=-0.013 Sum_probs=160.0
Q ss_pred CcEEEEEecCC-EEEEccCCCcEEEEcCCcc--eecccCCCCCeeEEEEe-CCEEEEEe-CCCeEEEEeecCCCcccccc
Q 047325 45 GHIYSLAASKD-LLYTGSDSKNIRVWKNLKE--FCGFKASSGLVKAIVIS-GEKIFTGH-QDGKIRVWKISPKNQSVHKR 119 (368)
Q Consensus 45 ~~i~~~~~~~~-~l~s~~~dg~i~iw~~~~~--~~~~~~~~~~v~~~~~~-~~~l~s~~-~dg~i~vw~~~~~~~~~~~~ 119 (368)
.....+.++++ +.++...++.|.+||..+. +..+. .......++++ +..++.+. .++.|.+||..+++......
T Consensus 44 ~~~~~i~~~~~~lyv~~~~~~~v~viD~~t~~~~~~i~-~~~~p~~i~~~~~g~lyv~~~~~~~v~~iD~~t~~~~~~i~ 122 (328)
T 3dsm_A 44 DVAQSMVIRDGIGWIVVNNSHVIFAIDINTFKEVGRIT-GFTSPRYIHFLSDEKAYVTQIWDYRIFIINPKTYEITGYIE 122 (328)
T ss_dssp SCEEEEEEETTEEEEEEGGGTEEEEEETTTCCEEEEEE-CCSSEEEEEEEETTEEEEEEBSCSEEEEEETTTTEEEEEEE
T ss_pred ccceEEEEECCEEEEEEcCCCEEEEEECcccEEEEEcC-CCCCCcEEEEeCCCeEEEEECCCCeEEEEECCCCeEEEEEE
Confidence 34677888777 5555566799999998743 33343 34567888884 55777666 89999999998776433222
Q ss_pred CCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcCCCCEEEEEe--CCCcEEEEEccCCeEEEEeecCCC
Q 047325 120 AGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCGLLYTAS--WDRTFKVWRISDSKCLESVSAHDD 197 (368)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--~d~~i~iwd~~~~~~~~~~~~~~~ 197 (368)
..... +.......+++ ++..++++. .++.|.++|+.+++.+..+... .
T Consensus 123 ~g~~~---------------------------~~~~~p~~i~~--~~~~lyv~~~~~~~~v~viD~~t~~~~~~i~~g-~ 172 (328)
T 3dsm_A 123 CPDMD---------------------------MESGSTEQMVQ--YGKYVYVNCWSYQNRILKIDTETDKVVDELTIG-I 172 (328)
T ss_dssp CTTCC---------------------------TTTCBCCCEEE--ETTEEEEEECTTCCEEEEEETTTTEEEEEEECS-S
T ss_pred cCCcc---------------------------ccCCCcceEEE--ECCEEEEEcCCCCCEEEEEECCCCeEEEEEEcC-C
Confidence 11000 01113445666 344555555 4889999999999988887653 3
Q ss_pred ceEEEEeCCCCeE-EEEcCC----------CeEEEEEcCCCCCCcccccceeecc-ccccEEEEEEcCCCCEEEEecCCC
Q 047325 198 AVNSVVSSSEGLI-FTGSAD----------GTVKVWKREQHGKGTKHSLAQTLLK-QECAVTALVVSSSRSIVYCGSSDG 265 (368)
Q Consensus 198 ~v~~~~~~~~~~l-~~~~~d----------g~i~i~d~~~~~~~~~~~~~~~~~~-~~~~i~~~~~~~~~~~l~~~~~dg 265 (368)
....+++.+++.+ +++..+ +.|.++|..+.. ....+.. .......++++|+++.|+++..
T Consensus 173 ~p~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~------v~~~~~~~~g~~p~~la~~~d~~~lyv~~~-- 244 (328)
T 3dsm_A 173 QPTSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETFT------VEKQFKFKLGDWPSEVQLNGTRDTLYWINN-- 244 (328)
T ss_dssp CBCCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTTE------EEEEEECCTTCCCEEEEECTTSCEEEEESS--
T ss_pred CccceEEcCCCCEEEEECCCccCCccccCCceEEEEECCCCe------EEEEEecCCCCCceeEEEecCCCEEEEEcc--
Confidence 4568889999944 444333 789999987542 2222221 1235789999999999888765
Q ss_pred cEEEEeCCCcccccee-ee--ccceEEEEEEe-CCCEEEEe----eCCCeEEEEecCCCceeeeEeeeccccCeeEEEEe
Q 047325 266 LVNFWEREKQLSHGGV-LK--GHKLAVLCLAA-AGKLVFSG----SADKTICVWRRDGAIHTCLSVLTGHTGPVKCLAVE 337 (368)
Q Consensus 266 ~i~i~d~~~~~~~~~~-~~--~~~~~~~~~~~-~~~~l~~~----~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~l~~~ 337 (368)
.|.+||..+++..... .. +....-++++| ++.++++. ..++.|.+||.+ + +.+.++.. ......++|-
T Consensus 245 ~v~~~d~~t~~~~~~~~~~~~~~~p~gi~vdp~~g~lyva~~~~y~~~~~V~v~d~~-g--~~~~~i~~-G~~P~~~~~~ 320 (328)
T 3dsm_A 245 DIWRMPVEADRVPVRPFLEFRDTKYYGLTVNPNNGEVYVADAIDYQQQGIVYRYSPQ-G--KLIDEFYV-GIIPGAFCWK 320 (328)
T ss_dssp SEEEEETTCSSCCSSCSBCCCSSCEEEEEECTTTCCEEEEECTTSSSEEEEEEECTT-C--CEEEEEEE-EESEEEEEEE
T ss_pred EEEEEECCCCceeeeeeecCCCCceEEEEEcCCCCeEEEEcccccccCCEEEEECCC-C--CEEEEEEe-ccCcceEEEe
Confidence 8999999876543211 22 12333467777 45566665 578999999887 3 45555542 3334555553
No 190
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.60 E-value=1.4e-14 Score=124.16 Aligned_cols=215 Identities=5% Similarity=-0.084 Sum_probs=137.3
Q ss_pred eeEEEEe--CCEEEEEeCC---CeEEEEeecCCCccccccCCccccceeeeeccCCCCceeEecccceeeeeecCCC-Ee
Q 047325 85 VKAIVIS--GEKIFTGHQD---GKIRVWKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDA-VS 158 (368)
Q Consensus 85 v~~~~~~--~~~l~s~~~d---g~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-v~ 158 (368)
+..++|+ |++|+..... ..|.+||+.+++...... +... ..
T Consensus 38 ~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~~~~l~~---------------------------------~~~~~~~ 84 (396)
T 3c5m_A 38 FYQKCFTQDGKKLLFAGDFDGNRNYYLLNLETQQAVQLTE---------------------------------GKGDNTF 84 (396)
T ss_dssp TTSCCBCTTSCEEEEEECTTSSCEEEEEETTTTEEEECCC---------------------------------SSCBCTT
T ss_pred eecCcCCCCCCEEEEEEecCCCceEEEEECCCCcEEEeec---------------------------------CCCCccc
Confidence 5566676 7787766543 368888887665322111 1122 22
Q ss_pred EEEEcCCCCEEEEEeCCCcEEEEEccCCeEEEEeecCCCceEE-------------------EEeCCCC-eEEEE-----
Q 047325 159 CMSLDQDCGLLYTASWDRTFKVWRISDSKCLESVSAHDDAVNS-------------------VVSSSEG-LIFTG----- 213 (368)
Q Consensus 159 ~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~-------------------~~~~~~~-~l~~~----- 213 (368)
.+.|+|+++.|+.++.++.|.+||+.+++.......+...... +.++|++ .++..
T Consensus 85 ~~~~spdg~~l~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~ 164 (396)
T 3c5m_A 85 GGFISTDERAFFYVKNELNLMKVDLETLEEQVIYTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEFYHT 164 (396)
T ss_dssp TCEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHHHT
T ss_pred cceECCCCCEEEEEEcCCcEEEEECCCCCcEEEEecccccCCCCCEEEeccCCccccccccccccCCCCcceeeeeeccC
Confidence 3689999999999999999999999988776655544443222 3467777 33332
Q ss_pred cCCCeEEEEEcCCCCCCcccccceeeccccccEEEEEEcC-CCCEEEEecCC------CcEEEEeCCCccccceeeecc-
Q 047325 214 SADGTVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSS-SRSIVYCGSSD------GLVNFWEREKQLSHGGVLKGH- 285 (368)
Q Consensus 214 ~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~d------g~i~i~d~~~~~~~~~~~~~~- 285 (368)
..+..|.+||+..+. ...+..+...+..+.|+| +++.|+..+.+ ..|.+||+...... ......
T Consensus 165 ~~~~~l~~~d~~~g~-------~~~~~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~-~l~~~~~ 236 (396)
T 3c5m_A 165 NPTCRLIKVDIETGE-------LEVIHQDTAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNVR-KIKEHAE 236 (396)
T ss_dssp CCCEEEEEEETTTCC-------EEEEEEESSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCCCE-ESSCCCT
T ss_pred CCcceEEEEECCCCc-------EEeeccCCcccccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCcee-EeeccCC
Confidence 456789999987642 222234556788999999 78877665543 36888898754322 111211
Q ss_pred c--eEEEEEEeCCCEEEEeeCC-----CeEEEEecCCCceeeeEeeeccccCeeEEEEec-CCeeeec
Q 047325 286 K--LAVLCLAAAGKLVFSGSAD-----KTICVWRRDGAIHTCLSVLTGHTGPVKCLAVEE-DRDSSSS 345 (368)
Q Consensus 286 ~--~~~~~~~~~~~~l~~~~~d-----g~i~iw~~~~~~~~~~~~~~~h~~~v~~l~~~~-~~~~~~~ 345 (368)
. .....++|++++|+.++.+ +.|++||+.++....+..+.+ .. +.|+| +|+.++.
T Consensus 237 ~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~----~~-~~~s~~dg~~l~~ 299 (396)
T 3c5m_A 237 GESCTHEFWIPDGSAMAYVSYFKGQTDRVIYKANPETLENEEVMVMPP----CS-HLMSNFDGSLMVG 299 (396)
T ss_dssp TEEEEEEEECTTSSCEEEEEEETTTCCEEEEEECTTTCCEEEEEECCS----EE-EEEECSSSSEEEE
T ss_pred CccccceEECCCCCEEEEEecCCCCccceEEEEECCCCCeEEeeeCCC----CC-CCccCCCCceEEE
Confidence 2 2235788899987776543 459999988764444333322 23 89999 9997775
No 191
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=99.59 E-value=2.2e-13 Score=125.55 Aligned_cols=223 Identities=10% Similarity=0.040 Sum_probs=145.0
Q ss_pred CCCCeeEEEEe--CCEEEEEeCCC-----eEEEEeecCCCccccccCCccccceeeeeccCCCCceeEecccceeeeeec
Q 047325 81 SSGLVKAIVIS--GEKIFTGHQDG-----KIRVWKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRH 153 (368)
Q Consensus 81 ~~~~v~~~~~~--~~~l~s~~~dg-----~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (368)
|...+..++|+ |++|+.+..++ .|++||+.+++...... .
T Consensus 123 ~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~~~---------------------------------~ 169 (710)
T 2xdw_A 123 GTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVL---------------------------------E 169 (710)
T ss_dssp SCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEE---------------------------------E
T ss_pred CCEEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCcccc---------------------------------c
Confidence 44467888888 77887665543 89999998876322100 1
Q ss_pred CCCEeEEEEcCCCCEEEEEeCCCc----------------EEEEEccCCe----EEEEeecCCCceEEEEeCCCC-eEEE
Q 047325 154 SDAVSCMSLDQDCGLLYTASWDRT----------------FKVWRISDSK----CLESVSAHDDAVNSVVSSSEG-LIFT 212 (368)
Q Consensus 154 ~~~v~~~~~~~~~~~l~~~~~d~~----------------i~iwd~~~~~----~~~~~~~~~~~v~~~~~~~~~-~l~~ 212 (368)
...+..++|+||++.|+.++.++. |++|++.+++ .+.....+...+..+.|+|+| +|+.
T Consensus 170 ~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~ 249 (710)
T 2xdw_A 170 RVKFSCMAWTHDGKGMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLL 249 (710)
T ss_dssp EECSCCEEECTTSSEEEEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEE
T ss_pred CcccceEEEEeCCCEEEEEEECCccccccccccccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcCCCCEEEE
Confidence 112567999999999999988766 9999998775 222222345567889999999 6665
Q ss_pred EcC-----CCeEEEEEcCC------CCCCcccccceeeccccccEEEEEEcCCCCEEEEecCC----CcEEEEeCCCccc
Q 047325 213 GSA-----DGTVKVWKREQ------HGKGTKHSLAQTLLKQECAVTALVVSSSRSIVYCGSSD----GLVNFWEREKQLS 277 (368)
Q Consensus 213 ~~~-----dg~i~i~d~~~------~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d----g~i~i~d~~~~~~ 277 (368)
++. +..|++||+.. +.. ....+..+...+.. .|+|+++.|+..+.. +.|.+||+.++..
T Consensus 250 ~~~~~~~~~~~l~~~d~~~~~~~~~~~~-----~~~~l~~~~~~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~ 323 (710)
T 2xdw_A 250 SIREGCDPVNRLWYCDLQQESNGITGIL-----KWVKLIDNFEGEYD-YVTNEGTVFTFKTNRHSPNYRLINIDFTDPEE 323 (710)
T ss_dssp EEECSSSSCCEEEEEEGGGSSSSSCSSC-----CCEEEECSSSSCEE-EEEEETTEEEEEECTTCTTCEEEEEETTSCCG
T ss_pred EEEccCCCccEEEEEECcccccccCCcc-----ceEEeeCCCCcEEE-EEeccCCEEEEEECCCCCCCEEEEEeCCCCCc
Confidence 543 67899999975 211 12333344444443 478888877765543 3699999887532
Q ss_pred -cceeeeccce--EEE--EEEeCCCEEEEeeCCCeEEE--EecCCCceeeeEeeeccccCeeEEEEecCCeeee
Q 047325 278 -HGGVLKGHKL--AVL--CLAAAGKLVFSGSADKTICV--WRRDGAIHTCLSVLTGHTGPVKCLAVEEDRDSSS 344 (368)
Q Consensus 278 -~~~~~~~~~~--~~~--~~~~~~~~l~~~~~dg~i~i--w~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~ 344 (368)
....+..|.. .+. ++++++.++++...|+..+| |++.++ ..+..+..+...+..++++|++..++
T Consensus 324 ~~~~~l~~~~~~~~~~~~~~~~~~~lv~~~~~~g~~~l~~~~~~~g--~~~~~l~~~~~~v~~~~~s~d~~~l~ 395 (710)
T 2xdw_A 324 SKWKVLVPEHEKDVLEWVACVRSNFLVLCYLHDVKNTLQLHDLATG--ALLKIFPLEVGSVVGYSGQKKDTEIF 395 (710)
T ss_dssp GGCEEEECCCSSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTTC--CEEEEECCCSSEEEEEECCTTCSEEE
T ss_pred ccceeccCCCCCCeEEEEEEEcCCEEEEEEEECCEEEEEEEECCCC--CEEEecCCCCceEEEEecCCCCCEEE
Confidence 1123333322 343 34445677888888886555 554333 44566666777889999999986554
No 192
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=99.59 E-value=4.9e-13 Score=123.30 Aligned_cols=200 Identities=9% Similarity=-0.028 Sum_probs=132.0
Q ss_pred cCCCEeEEEEcCCCCEEEEEeCCC-----cEEEEEccCCeEEEEeecCCCceEEEEeCCCC-eEEEEcCCCe--------
Q 047325 153 HSDAVSCMSLDQDCGLLYTASWDR-----TFKVWRISDSKCLESVSAHDDAVNSVVSSSEG-LIFTGSADGT-------- 218 (368)
Q Consensus 153 ~~~~v~~~~~~~~~~~l~~~~~d~-----~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~dg~-------- 218 (368)
|...+..++|+|||++|+.+..++ .|++||+.+++.+.....+ ..+..++|+||| .|+.++.++.
T Consensus 123 ~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~~~~~-~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~ 201 (710)
T 2xdw_A 123 GTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLER-VKFSCMAWTHDGKGMFYNAYPQQDGKSDGTE 201 (710)
T ss_dssp SCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEEE-ECSCCEEECTTSSEEEEEECCCCSSCCSSSC
T ss_pred CCEEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCcccccC-cccceEEEEeCCCEEEEEEECCccccccccc
Confidence 334678899999999998776543 8999999999877643222 236779999999 7777776655
Q ss_pred --------EEEEEcCCCCCCcccccceeeccccccEEEEEEcCCCCEEEEecC-----CCcEEEEeCCC------ccccc
Q 047325 219 --------VKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSSSRSIVYCGSS-----DGLVNFWEREK------QLSHG 279 (368)
Q Consensus 219 --------i~i~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-----dg~i~i~d~~~------~~~~~ 279 (368)
|++|++.+... ....+.....+...+..+.|+|++++|+..+. +..|++||+.+ +....
T Consensus 202 ~~~~~~~~v~~~~l~t~~~--~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~ 279 (710)
T 2xdw_A 202 TSTNLHQKLYYHVLGTDQS--EDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKW 279 (710)
T ss_dssp CCCCCCCEEEEEETTSCGG--GCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCC
T ss_pred cccCCCCEEEEEECCCCcc--cceEEeccCCCCeEEEEEEEcCCCCEEEEEEEccCCCccEEEEEECcccccccCCccce
Confidence 99999975421 00112222234556789999999999887764 56899999876 42222
Q ss_pred eeeeccc-eEEEEEEeCCCEEEEeeCC----CeEEEEecCCCceeeeEeeecccc--CeeEEEEecCCeeeecCC--cce
Q 047325 280 GVLKGHK-LAVLCLAAAGKLVFSGSAD----KTICVWRRDGAIHTCLSVLTGHTG--PVKCLAVEEDRDSSSSTS--SCA 350 (368)
Q Consensus 280 ~~~~~~~-~~~~~~~~~~~~l~~~~~d----g~i~iw~~~~~~~~~~~~~~~h~~--~v~~l~~~~~~~~~~~~~--~~~ 350 (368)
..+..+. .....++++++.|+..+.+ +.|.+||+++........+..|.. .+.+++|++++.++++.. +..
T Consensus 280 ~~l~~~~~~~~~~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~lv~~~~~~g~~ 359 (710)
T 2xdw_A 280 VKLIDNFEGEYDYVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRSNFLVLCYLHDVKN 359 (710)
T ss_dssp EEEECSSSSCEEEEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCEEEEEEEETTTEEEEEEEETTEE
T ss_pred EEeeCCCCcEEEEEeccCCEEEEEECCCCCCCEEEEEeCCCCCcccceeccCCCCCCeEEEEEEEcCCEEEEEEEECCEE
Confidence 2333332 2234578888877766543 369999987653212344445544 688899998777666553 334
Q ss_pred EEEEE
Q 047325 351 QRWIV 355 (368)
Q Consensus 351 ~~w~l 355 (368)
++|.+
T Consensus 360 ~l~~~ 364 (710)
T 2xdw_A 360 TLQLH 364 (710)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 55544
No 193
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=99.58 E-value=1.4e-12 Score=105.35 Aligned_cols=229 Identities=11% Similarity=0.029 Sum_probs=152.2
Q ss_pred CEEEEccCCCcEEEEcCCcc--eecccCCC-CCeeEEEEe--CCEEEEEeCCCeEEEEeecCCCccccccCCccccceee
Q 047325 55 DLLYTGSDSKNIRVWKNLKE--FCGFKASS-GLVKAIVIS--GEKIFTGHQDGKIRVWKISPKNQSVHKRAGTLPTLKDI 129 (368)
Q Consensus 55 ~~l~s~~~dg~i~iw~~~~~--~~~~~~~~-~~v~~~~~~--~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~ 129 (368)
++|++++.|+.|.+||..+. +..+..+. ..+.++.+. |+.++ +.++.|..||. +++........
T Consensus 6 ~~lv~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~~~~~~pdG~ilv--s~~~~V~~~d~-~G~~~W~~~~~-------- 74 (276)
T 3no2_A 6 HLLVGGSGWNKIAIINKDTKEIVWEYPLEKGWECNSVAATKAGEILF--SYSKGAKMITR-DGRELWNIAAP-------- 74 (276)
T ss_dssp EEEEECTTCSEEEEEETTTTEEEEEEECCTTCCCCEEEECTTSCEEE--ECBSEEEEECT-TSCEEEEEECC--------
T ss_pred cEEEeeCCCCEEEEEECCCCeEEEEeCCCccCCCcCeEECCCCCEEE--eCCCCEEEECC-CCCEEEEEcCC--------
Confidence 48999999999999998543 34455554 467777776 66666 45788999998 56544433221
Q ss_pred eeccCCCCceeEecccceeeeeecCCCEeEEEEcCCCCEEEEEeC-CCcEEEEEccCCeEEEEeecC------CCceEEE
Q 047325 130 FKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCGLLYTASW-DRTFKVWRISDSKCLESVSAH------DDAVNSV 202 (368)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d~~i~iwd~~~~~~~~~~~~~------~~~v~~~ 202 (368)
....+.++.+.++++++++.+. ++.|..+|. +++.+..+... ......+
T Consensus 75 -----------------------~~~~~~~~~~~~dG~~lv~~~~~~~~v~~vd~-~Gk~l~~~~~~~~~~~~~~~~~~v 130 (276)
T 3no2_A 75 -----------------------AGCEMQTARILPDGNALVAWCGHPSTILEVNM-KGEVLSKTEFETGIERPHAQFRQI 130 (276)
T ss_dssp -----------------------TTCEEEEEEECTTSCEEEEEESTTEEEEEECT-TSCEEEEEEECCSCSSGGGSCSCC
T ss_pred -----------------------CCccccccEECCCCCEEEEecCCCCEEEEEeC-CCCEEEEEeccCCCCcccccccCc
Confidence 2245778899999999999887 778888886 78877766521 1234456
Q ss_pred EeCCCC-eEEEEcCCCeEEEEEcCCCCCCcccccceeeccccccEEEEEEcCCCCEEEEecCCCcEEEEeCCCcccccee
Q 047325 203 VSSSEG-LIFTGSADGTVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSSSRSIVYCGSSDGLVNFWEREKQLSHGGV 281 (368)
Q Consensus 203 ~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~ 281 (368)
...+++ ++++...++.|..||.+ ++ .+..+... ..+.++...+++++++++..++.|..+|..+++.....
T Consensus 131 ~~~~~G~~lv~~~~~~~v~~~d~~-G~------~~w~~~~~-~~~~~~~~~~~g~~~v~~~~~~~v~~~d~~tG~~~w~~ 202 (276)
T 3no2_A 131 NKNKKGNYLVPLFATSEVREIAPN-GQ------LLNSVKLS-GTPFSSAFLDNGDCLVACGDAHCFVQLNLESNRIVRRV 202 (276)
T ss_dssp EECTTSCEEEEETTTTEEEEECTT-SC------EEEEEECS-SCCCEEEECTTSCEEEECBTTSEEEEECTTTCCEEEEE
T ss_pred eECCCCCEEEEecCCCEEEEECCC-CC------EEEEEECC-CCccceeEcCCCCEEEEeCCCCeEEEEeCcCCcEEEEe
Confidence 678888 88888999999999987 42 22233222 34556778899999999998889999999877665333
Q ss_pred eecc-----c--eEEEEEEeCCCEEEEeeCC--------CeEEEEecCCCceeeeEeeecc
Q 047325 282 LKGH-----K--LAVLCLAAAGKLVFSGSAD--------KTICVWRRDGAIHTCLSVLTGH 327 (368)
Q Consensus 282 ~~~~-----~--~~~~~~~~~~~~l~~~~~d--------g~i~iw~~~~~~~~~~~~~~~h 327 (368)
.... - .....+.+++.++++.... +..++++++. +++.+.++..+
T Consensus 203 ~~~~~~~~~l~~~~~~~~~~~G~i~v~~~~g~~~~~~~~~~~~~~~~~~-~g~~~W~~~~~ 262 (276)
T 3no2_A 203 NANDIEGVQLFFVAQLFPLQNGGLYICNWQGHDREAGKGKHPQLVEIDS-EGKVVWQLNDK 262 (276)
T ss_dssp EGGGSBSCCCSEEEEEEECTTSCEEEEEECTTCTTGGGSCCCSEEEECT-TSBEEEEECCT
T ss_pred cCCCCCCccccccccceEcCCCCEEEEeccCccccccccCCceEEEECC-CCCEEEEecCc
Confidence 2110 1 1123344577777776311 2345666543 23556665443
No 194
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=99.57 E-value=2.3e-13 Score=125.09 Aligned_cols=224 Identities=13% Similarity=0.057 Sum_probs=143.1
Q ss_pred CCCCCeeEEEEe--CCEEE-----EEeCCCeEEEEeecCCCccccccCCccccceeeeeccCCCCceeEecccceeeeee
Q 047325 80 ASSGLVKAIVIS--GEKIF-----TGHQDGKIRVWKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIR 152 (368)
Q Consensus 80 ~~~~~v~~~~~~--~~~l~-----s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (368)
+|...+.+++|+ |++|+ .|+.+..|++||+.+++.......
T Consensus 118 ~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~~~~~~~-------------------------------- 165 (695)
T 2bkl_A 118 DGTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDSGEWSKVDVI-------------------------------- 165 (695)
T ss_dssp SSCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETTTCCBCSSCCB--------------------------------
T ss_pred CCCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECCCCCCcCCccc--------------------------------
Confidence 455568888888 77777 344457899999998874311000
Q ss_pred cCCCEeEEEEcCCCCEEEEEeCCCc-------------EEEEEccCCe----EEEEeecCCCceEEEEeCCCC-eEEEEc
Q 047325 153 HSDAVSCMSLDQDCGLLYTASWDRT-------------FKVWRISDSK----CLESVSAHDDAVNSVVSSSEG-LIFTGS 214 (368)
Q Consensus 153 ~~~~v~~~~~~~~~~~l~~~~~d~~-------------i~iwd~~~~~----~~~~~~~~~~~v~~~~~~~~~-~l~~~~ 214 (368)
.......++|+||++.|+.++.|.. |++|++.+++ .+.....+...+..+.|+|+| +|+.++
T Consensus 166 ~~~~~~~~~wspDg~~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~ 245 (695)
T 2bkl_A 166 EGGKYATPKWTPDSKGFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSRDGKYLFVYI 245 (695)
T ss_dssp SCCTTCCCEECTTSSEEEEEECCCCTTSCGGGGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEECTTSCCEEEEE
T ss_pred CcccccceEEecCCCEEEEEEecCCCCCccccCCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEEECCCCCEEEEEE
Confidence 0011157899999999999988776 9999998775 333444455678899999999 666666
Q ss_pred CCC----eEEEEEcCCCCCCcccccceeeccccccEEEEEEcCCCCEEEEec---CCCcEEEEeCCCccc--cceeeecc
Q 047325 215 ADG----TVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSSSRSIVYCGS---SDGLVNFWEREKQLS--HGGVLKGH 285 (368)
Q Consensus 215 ~dg----~i~i~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~---~dg~i~i~d~~~~~~--~~~~~~~~ 285 (368)
.++ .|.+++.... ....+..+...+....+ +++.+++.+. .++.|.+||+.++.. .......+
T Consensus 246 ~~~~~~~~l~~~~~~~~-------~~~~l~~~~~~~~~~~~-~~g~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~ 317 (695)
T 2bkl_A 246 LRGWSENDVYWKRPGEK-------DFRLLVKGVGAKYEVHA-WKDRFYVLTDEGAPRQRVFEVDPAKPARASWKEIVPED 317 (695)
T ss_dssp EETTTEEEEEEECTTCS-------SCEEEEECSSCCEEEEE-ETTEEEEEECTTCTTCEEEEEBTTBCSGGGCEEEECCC
T ss_pred eCCCCceEEEEEcCCCC-------ceEEeecCCCceEEEEe-cCCcEEEEECCCCCCCEEEEEeCCCCCccCCeEEecCC
Confidence 554 5666654322 12333334444455555 5555444444 257899999976542 12233333
Q ss_pred -ceEEEEEEe-CCCEEEEeeCCCeEEEEecCCCceeeeEeeecc-ccCeeEEEEecCCeeee
Q 047325 286 -KLAVLCLAA-AGKLVFSGSADKTICVWRRDGAIHTCLSVLTGH-TGPVKCLAVEEDRDSSS 344 (368)
Q Consensus 286 -~~~~~~~~~-~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h-~~~v~~l~~~~~~~~~~ 344 (368)
...+..+++ ++.++++...|+..++|.++.. ......+..+ ...+..++++|++..++
T Consensus 318 ~~~~l~~~~~~~~~lv~~~~~dg~~~l~~~~~~-g~~~~~l~~~~~~~v~~~~~s~d~~~l~ 378 (695)
T 2bkl_A 318 SSASLLSVSIVGGHLSLEYLKDATSEVRVATLK-GKPVRTVQLPGVGAASNLMGLEDLDDAY 378 (695)
T ss_dssp SSCEEEEEEEETTEEEEEEEETTEEEEEEEETT-CCEEEECCCSSSSEECCCBSCTTCSEEE
T ss_pred CCCeEEEEEEECCEEEEEEEECCEEEEEEEeCC-CCeeEEecCCCCeEEEEeecCCCCCEEE
Confidence 334444444 5678888889999888876532 2334445444 56688889999987655
No 195
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=99.57 E-value=1.3e-11 Score=101.18 Aligned_cols=225 Identities=10% Similarity=0.045 Sum_probs=146.7
Q ss_pred CCCCCeeEEEEe--CCEEEEEeCCCeEEEEeecCCCccccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCE
Q 047325 80 ASSGLVKAIVIS--GEKIFTGHQDGKIRVWKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAV 157 (368)
Q Consensus 80 ~~~~~v~~~~~~--~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 157 (368)
.+...+.+++++ +..+++...++.|.+||.. +........ .....+
T Consensus 12 ~~~~~~~~i~~d~~g~l~v~~~~~~~v~~~d~~-~~~~~~~~~-------------------------------~~~~~~ 59 (299)
T 2z2n_A 12 NQDTGPYGITVSDKGKVWITQHKANMISCINLD-GKITEYPLP-------------------------------TPDAKV 59 (299)
T ss_dssp SSSCCEEEEEECTTSCEEEEETTTTEEEEECTT-CCEEEEECS-------------------------------STTCCE
T ss_pred CcCCCccceEECCCCCEEEEecCCCcEEEEcCC-CCeEEecCC-------------------------------cccCce
Confidence 345678899988 5555555557899999977 432111000 034568
Q ss_pred eEEEEcCCCCEEEEEeCCCcEEEEEccCCeEE-EEeecCCCceEEEEeCCCC-eEEEEcCCCeEEEEEcCCCCCCccccc
Q 047325 158 SCMSLDQDCGLLYTASWDRTFKVWRISDSKCL-ESVSAHDDAVNSVVSSSEG-LIFTGSADGTVKVWKREQHGKGTKHSL 235 (368)
Q Consensus 158 ~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~-~~~~~~~~~v~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~ 235 (368)
.++++++++.++++...++.|..||.. ++.. ..+......+.++++.+++ .+++...++.|..||. .+.. .
T Consensus 60 ~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~-----~ 132 (299)
T 2z2n_A 60 MCLTISSDGEVWFTENAANKIGRITKK-GIIKEYTLPNPDSAPYGITEGPNGDIWFTEMNGNRIGRITD-DGKI-----R 132 (299)
T ss_dssp EEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCE-----E
T ss_pred eeEEECCCCCEEEeCCCCCeEEEECCC-CcEEEEeCCCcCCCceeeEECCCCCEEEEecCCceEEEECC-CCCE-----E
Confidence 899999999877777667889999986 4322 2222245578899999988 5555566889999998 3211 1
Q ss_pred ceeeccccccEEEEEEcCCCCEEEEecCCCcEEEEeCCCccccceeeeccce--EEEEEEeCCCEEEEeeCCCeEEEEec
Q 047325 236 AQTLLKQECAVTALVVSSSRSIVYCGSSDGLVNFWEREKQLSHGGVLKGHKL--AVLCLAAAGKLVFSGSADKTICVWRR 313 (368)
Q Consensus 236 ~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~~~~~dg~i~iw~~ 313 (368)
..........+..+++.+++++.++...++.|..||. ++............ .-+++.+++.+.++...++.|.+|+.
T Consensus 133 ~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~ 211 (299)
T 2z2n_A 133 EYELPNKGSYPSFITLGSDNALWFTENQNNAIGRITE-SGDITEFKIPTPASGPVGITKGNDDALWFVEIIGNKIGRITT 211 (299)
T ss_dssp EEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT
T ss_pred EecCCCCCCCCceEEEcCCCCEEEEeCCCCEEEEEcC-CCcEEEeeCCCCCCcceeEEECCCCCEEEEccCCceEEEECC
Confidence 1112223456889999999988887777889999998 44332211222222 23455567887777667889999988
Q ss_pred CCCceeeeEeeeccccCeeEEEEecCCeeeecC
Q 047325 314 DGAIHTCLSVLTGHTGPVKCLAVEEDRDSSSST 346 (368)
Q Consensus 314 ~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~ 346 (368)
+.... ......+...+.+++++++|.+.++.
T Consensus 212 -~g~~~-~~~~~~~~~~~~~i~~~~~g~l~v~~ 242 (299)
T 2z2n_A 212 -SGEIT-EFKIPTPNARPHAITAGAGIDLWFTE 242 (299)
T ss_dssp -TCCEE-EEECSSTTCCEEEEEECSTTCEEEEE
T ss_pred -CCcEE-EEECCCCCCCceeEEECCCCCEEEec
Confidence 44222 12233455678999999999865554
No 196
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=99.56 E-value=9e-12 Score=103.06 Aligned_cols=239 Identities=8% Similarity=0.051 Sum_probs=150.3
Q ss_pred CcEEEEEecC--CEEEE-------ccCCCcEEEEcCCc-ceecccC-----CCCCeeEEEEe-C-CEEEEEeCCCeEEEE
Q 047325 45 GHIYSLAASK--DLLYT-------GSDSKNIRVWKNLK-EFCGFKA-----SSGLVKAIVIS-G-EKIFTGHQDGKIRVW 107 (368)
Q Consensus 45 ~~i~~~~~~~--~~l~s-------~~~dg~i~iw~~~~-~~~~~~~-----~~~~v~~~~~~-~-~~l~s~~~dg~i~vw 107 (368)
....+++|++ .++++ +..++.|.+||..+ ....+.. +...+.+++++ . ..|+.++.++.|.+|
T Consensus 18 ~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~~~~~g~l~v~~~~~~l~~~ 97 (314)
T 1pjx_A 18 PGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFVADMRLGLLVV 97 (314)
T ss_dssp TTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEEEETTTEEEEE
T ss_pred CCccCceECCCCCEEEEEeccccCCCCCCEEEEEeCCCCcEEEEEecccCCCCCCCceEEEecCCCcEEEEECCCCEEEE
Confidence 3456788864 36666 57789999999653 3333322 45678899987 4 577777766688899
Q ss_pred eecCCCcccc-ccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcCCCCEEEEEeCC-----------
Q 047325 108 KISPKNQSVH-KRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCGLLYTASWD----------- 175 (368)
Q Consensus 108 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d----------- 175 (368)
|.+ ++.... ..... . .....+.+++++++++++++...+
T Consensus 98 d~~-g~~~~~~~~~~~--~--------------------------~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~ 148 (314)
T 1pjx_A 98 QTD-GTFEEIAKKDSE--G--------------------------RRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSM 148 (314)
T ss_dssp ETT-SCEEECCSBCTT--S--------------------------CBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTT
T ss_pred eCC-CCEEEEEeccCC--C--------------------------ccccCCcCEEECCCCCEEEEecCcccccccccccc
Confidence 987 543211 11000 0 022457889999999877776554
Q ss_pred ----CcEEEEEccCCeEEEEeecCCCceEEEEeC----CCC-eEEE-EcCCCeEEEEEcCCCCCCcccccceeecccc-c
Q 047325 176 ----RTFKVWRISDSKCLESVSAHDDAVNSVVSS----SEG-LIFT-GSADGTVKVWKREQHGKGTKHSLAQTLLKQE-C 244 (368)
Q Consensus 176 ----~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~----~~~-~l~~-~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~-~ 244 (368)
+.|..+|.. ++...... +......++++ +++ .++. ...++.|.+||.+..+..........+..+. .
T Consensus 149 ~~~~~~l~~~~~~-g~~~~~~~-~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~ 226 (314)
T 1pjx_A 149 QEKFGSIYCFTTD-GQMIQVDT-AFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEG 226 (314)
T ss_dssp SSSCEEEEEECTT-SCEEEEEE-EESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSC
T ss_pred cCCCCeEEEECCC-CCEEEecc-CCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEECCCCCCC
Confidence 567778765 55443332 33456788898 988 5544 4568999999986211100111112222332 5
Q ss_pred cEEEEEEcCCCCEEEEecCCCcEEEEeCCCccccceeeeccceEE--EEEEeCCCEEE-EeeCCCeEEEEecCC
Q 047325 245 AVTALVVSSSRSIVYCGSSDGLVNFWEREKQLSHGGVLKGHKLAV--LCLAAAGKLVF-SGSADKTICVWRRDG 315 (368)
Q Consensus 245 ~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~-~~~~dg~i~iw~~~~ 315 (368)
.+..+++++++++.++...++.|.+||.+++... .....+...+ ++++++++.|+ +...++.|..|+++.
T Consensus 227 ~p~~i~~d~~G~l~v~~~~~~~i~~~d~~~g~~~-~~~~~~~~~~~~i~~~~dg~~l~v~~~~~~~l~~~~~~~ 299 (314)
T 1pjx_A 227 GADGMDFDEDNNLLVANWGSSHIEVFGPDGGQPK-MRIRCPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQR 299 (314)
T ss_dssp EEEEEEEBTTCCEEEEEETTTEEEEECTTCBSCS-EEEECSSSCEEEEEECTTSSEEEEEETTTTEEEEEECSS
T ss_pred CCCceEECCCCCEEEEEcCCCEEEEEcCCCCcEe-EEEeCCCCCceeEEECCCCCEEEEEeCCCCeEEEEeCCC
Confidence 6788999999998888778889999998855443 2233332333 44557888554 555678899998764
No 197
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=99.55 E-value=9.8e-13 Score=120.97 Aligned_cols=244 Identities=8% Similarity=-0.073 Sum_probs=151.4
Q ss_pred CcCCcEEEEEecCC--EEE-----EccCCCcEEEEcCCcceecccCCCCCe--eEEEEe--CCEEEEEeCCCe-------
Q 047325 42 REEGHIYSLAASKD--LLY-----TGSDSKNIRVWKNLKEFCGFKASSGLV--KAIVIS--GEKIFTGHQDGK------- 103 (368)
Q Consensus 42 ~h~~~i~~~~~~~~--~l~-----s~~~dg~i~iw~~~~~~~~~~~~~~~v--~~~~~~--~~~l~s~~~dg~------- 103 (368)
+|...+.+++|+++ +|| .|+.+.+|++||+.+.......+...+ ..++|+ |+.|+.++.|..
T Consensus 118 ~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~~~~~~~~~~~~~~~~wspDg~~l~~~~~d~~~~~~~~~ 197 (695)
T 2bkl_A 118 DGTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDSGEWSKVDVIEGGKYATPKWTPDSKGFYYEWLPTDPSIKVDE 197 (695)
T ss_dssp SSCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETTTCCBCSSCCBSCCTTCCCEECTTSSEEEEEECCCCTTSCGGG
T ss_pred CCCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECCCCCCcCCcccCcccccceEEecCCCEEEEEEecCCCCCcccc
Confidence 45557888888866 777 566678999999876433211122222 677887 778999888776
Q ss_pred ------EEEEeecCCCccccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcCCCCEEEEEeCCC-
Q 047325 104 ------IRVWKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCGLLYTASWDR- 176 (368)
Q Consensus 104 ------i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~- 176 (368)
|++|++.++........ ....+...+..+.|+|||++|+..+.++
T Consensus 198 ~~~~~~v~~~~l~t~~~~~~lv~----------------------------~~~~~~~~~~~~~~SpDG~~l~~~~~~~~ 249 (695)
T 2bkl_A 198 RPGYTTIRYHTLGTEPSKDTVVH----------------------------ERTGDPTTFLQSDLSRDGKYLFVYILRGW 249 (695)
T ss_dssp GGGGCEEEEEETTSCGGGCEEEE----------------------------CCCCCTTCEEEEEECTTSCCEEEEEEETT
T ss_pred CCCCCEEEEEECCCCchhceEEE----------------------------ecCCCCEEEEEEEECCCCCEEEEEEeCCC
Confidence 99999987652110000 0011456788999999999988887666
Q ss_pred ---cEEEEEccCCeEEEEeecCCCceEEEEeCCCCeEEEEc---CCCeEEEEEcCCCCCCcccccceeeccc-cccEEEE
Q 047325 177 ---TFKVWRISDSKCLESVSAHDDAVNSVVSSSEGLIFTGS---ADGTVKVWKREQHGKGTKHSLAQTLLKQ-ECAVTAL 249 (368)
Q Consensus 177 ---~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~---~dg~i~i~d~~~~~~~~~~~~~~~~~~~-~~~i~~~ 249 (368)
.|.++|..+++. ..+..+...+....+++++.++.+. .++.|.+||+..... ......+..+ ...+..+
T Consensus 250 ~~~~l~~~~~~~~~~-~~l~~~~~~~~~~~~~~g~l~~~s~~~~~~~~l~~~d~~~~~~---~~~~~l~~~~~~~~l~~~ 325 (695)
T 2bkl_A 250 SENDVYWKRPGEKDF-RLLVKGVGAKYEVHAWKDRFYVLTDEGAPRQRVFEVDPAKPAR---ASWKEIVPEDSSASLLSV 325 (695)
T ss_dssp TEEEEEEECTTCSSC-EEEEECSSCCEEEEEETTEEEEEECTTCTTCEEEEEBTTBCSG---GGCEEEECCCSSCEEEEE
T ss_pred CceEEEEEcCCCCce-EEeecCCCceEEEEecCCcEEEEECCCCCCCEEEEEeCCCCCc---cCCeEEecCCCCCeEEEE
Confidence 777787665543 3444455555566664434334433 258899999876421 0011222222 4567888
Q ss_pred EEcCCCCEEEEecCCCcEEEEeCC-Cccccceeeecc-ceEEE--EEEeCCCEEE----EeeCCCeEEEEecCCCcee
Q 047325 250 VVSSSRSIVYCGSSDGLVNFWERE-KQLSHGGVLKGH-KLAVL--CLAAAGKLVF----SGSADKTICVWRRDGAIHT 319 (368)
Q Consensus 250 ~~~~~~~~l~~~~~dg~i~i~d~~-~~~~~~~~~~~~-~~~~~--~~~~~~~~l~----~~~~dg~i~iw~~~~~~~~ 319 (368)
+++ ++.++++...|+..++|.+. .+... ..+..+ ...+. +++++++.++ +....++|++||+.++...
T Consensus 326 ~~~-~~~lv~~~~~dg~~~l~~~~~~g~~~-~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~v~~~d~~~g~~~ 401 (695)
T 2bkl_A 326 SIV-GGHLSLEYLKDATSEVRVATLKGKPV-RTVQLPGVGAASNLMGLEDLDDAYYVFTSFTTPRQIYKTSVSTGKSE 401 (695)
T ss_dssp EEE-TTEEEEEEEETTEEEEEEEETTCCEE-EECCCSSSSEECCCBSCTTCSEEEEEEEETTEEEEEEEEETTTCCEE
T ss_pred EEE-CCEEEEEEEECCEEEEEEEeCCCCee-EEecCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCcEE
Confidence 888 67788888899988887654 22222 222222 44443 3456777666 3334578999999876433
No 198
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=99.54 E-value=1e-13 Score=116.04 Aligned_cols=173 Identities=12% Similarity=0.051 Sum_probs=122.6
Q ss_pred cEEEEEecCC--EEEEccCCCcEEEEcCCcce------------ecccCCCCCeeEEEEeCCEEEEEeCCCeEEEEeecC
Q 047325 46 HIYSLAASKD--LLYTGSDSKNIRVWKNLKEF------------CGFKASSGLVKAIVISGEKIFTGHQDGKIRVWKISP 111 (368)
Q Consensus 46 ~i~~~~~~~~--~l~s~~~dg~i~iw~~~~~~------------~~~~~~~~~v~~~~~~~~~l~s~~~dg~i~vw~~~~ 111 (368)
+++.|++++. ++++|+.|+ +++|++.... .....+.. |+.++|++..|+++ .++.|++||+.+
T Consensus 39 ~~nlLais~~~gll~a~~~~~-l~v~~~~~l~~~~~~~~~~~~~~~~~~lp~-V~~l~fd~~~L~v~-~~~~l~v~dv~s 115 (388)
T 1xip_A 39 SLQNLDISNSKSLFVAASGSK-AVVGELQLLRDHITSDSTPLTFKWEKEIPD-VIFVCFHGDQVLVS-TRNALYSLDLEE 115 (388)
T ss_dssp CCBCEEEETTTTEEEEEETTE-EEEEEHHHHHHHHHSSSCCCCCSEEEECTT-EEEEEEETTEEEEE-ESSEEEEEESSS
T ss_pred cccEEEEcCCCCEEEEeCCCE-EEEEEhhHhhhhhccccccccceEEeeCCC-eeEEEECCCEEEEE-cCCcEEEEEchh
Confidence 4667777644 888888885 5569754221 11223555 99999988899988 889999999987
Q ss_pred CCccccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcCCCCEEEEEeCCCcEEEEEccCCeEEEE
Q 047325 112 KNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCGLLYTASWDRTFKVWRISDSKCLES 191 (368)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~ 191 (368)
...... ...|...+.++.+.+. .+++++.||.|.+||+.+++...
T Consensus 116 l~~~~~--------------------------------~~~~~~~v~~i~~~~p--~~av~~~dG~L~v~dl~~~~~~~- 160 (388)
T 1xip_A 116 LSEFRT--------------------------------VTSFEKPVFQLKNVNN--TLVILNSVNDLSALDLRTKSTKQ- 160 (388)
T ss_dssp TTCEEE--------------------------------EEECSSCEEEEEECSS--EEEEEETTSEEEEEETTTCCEEE-
T ss_pred hhccCc--------------------------------cceeecceeeEEecCC--CEEEEECCCCEEEEEccCCcccc-
Confidence 652111 1125666777777654 38889999999999999877653
Q ss_pred eecCCCceEEEEeCCCCeEEEEcCCCeEEEEEcCCCCC--Ccccccceeec---cccccEEEEEEcCCCCEEEE
Q 047325 192 VSAHDDAVNSVVSSSEGLIFTGSADGTVKVWKREQHGK--GTKHSLAQTLL---KQECAVTALVVSSSRSIVYC 260 (368)
Q Consensus 192 ~~~~~~~v~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~--~~~~~~~~~~~---~~~~~i~~~~~~~~~~~l~~ 260 (368)
+...|+|++|+|+| ++.|..||.+++|+...... .........+. .|...|.++.|.+++.++++
T Consensus 161 ---~~~~Vs~v~WSpkG-~~vg~~dg~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~ 230 (388)
T 1xip_A 161 ---LAQNVTSFDVTNSQ-LAVLLKDRSFQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAV 230 (388)
T ss_dssp ---EEESEEEEEECSSE-EEEEETTSCEEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEE
T ss_pred ---ccCCceEEEEcCCc-eEEEEcCCcEEEEcCCCccccccceecCCcccccccCCCeeEEEEEEecCCeEEEE
Confidence 34589999999999 77899999999998875421 00000000112 36788999999999988876
No 199
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=99.53 E-value=2.7e-11 Score=99.31 Aligned_cols=215 Identities=14% Similarity=0.127 Sum_probs=136.8
Q ss_pred CeeEEEEe---CCEEEEEeCCCeEEEEeecCCCccccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEE
Q 047325 84 LVKAIVIS---GEKIFTGHQDGKIRVWKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCM 160 (368)
Q Consensus 84 ~v~~~~~~---~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 160 (368)
.-.+..|+ +..+++...++.|..||..++.... ......+.++
T Consensus 14 ~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~~~----------------------------------~~~~~~~~~i 59 (297)
T 3g4e_A 14 CGESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQVQR----------------------------------VTMDAPVSSV 59 (297)
T ss_dssp BEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEE----------------------------------EECSSCEEEE
T ss_pred cccCCeEECCCCEEEEEECCCCEEEEEECCCCcEEE----------------------------------EeCCCceEEE
Confidence 34566676 3355566678899999987664211 0134678899
Q ss_pred EEcCCCCEEEEEeCCCcEEEEEccCCeEEEEeec----CCCceEEEEeCCCCeEEEEcC----------CCeEEEEEcCC
Q 047325 161 SLDQDCGLLYTASWDRTFKVWRISDSKCLESVSA----HDDAVNSVVSSSEGLIFTGSA----------DGTVKVWKREQ 226 (368)
Q Consensus 161 ~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~----~~~~v~~~~~~~~~~l~~~~~----------dg~i~i~d~~~ 226 (368)
+++++++++++ . ++.|.+||..+++....... ....++.+++.|+|.++.++. ...-.+|.+..
T Consensus 60 ~~~~dG~l~v~-~-~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~ 137 (297)
T 3g4e_A 60 ALRQSGGYVAT-I-GTKFCALNWKEQSAVVLATVDNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFP 137 (297)
T ss_dssp EEBTTSSEEEE-E-TTEEEEEETTTTEEEEEEECCTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECT
T ss_pred EECCCCCEEEE-E-CCeEEEEECCCCcEEEEEecCCCCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEEC
Confidence 99999995544 4 56799999988875443322 124578899999994444431 12334555443
Q ss_pred CCCCcccccceeeccccccEEEEEEcCCCCEEE-EecCCCcEEEEeCC--Ccccc----ceeeeccceE--EEEEEeCCC
Q 047325 227 HGKGTKHSLAQTLLKQECAVTALVVSSSRSIVY-CGSSDGLVNFWERE--KQLSH----GGVLKGHKLA--VLCLAAAGK 297 (368)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~-~~~~dg~i~i~d~~--~~~~~----~~~~~~~~~~--~~~~~~~~~ 297 (368)
... .............++|+|+++.|+ +.+.++.|.+||+. ++... ......+... -++++++|+
T Consensus 138 ~g~------~~~~~~~~~~pngi~~spdg~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~ 211 (297)
T 3g4e_A 138 DHH------VKKYFDQVDISNGLDWSLDHKIFYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGK 211 (297)
T ss_dssp TSC------EEEEEEEESBEEEEEECTTSCEEEEEEGGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTSC
T ss_pred CCC------EEEEeeccccccceEEcCCCCEEEEecCCCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCCC
Confidence 221 112223334568899999998664 55667899999873 33221 1111112122 255667888
Q ss_pred EEEEeeCCCeEEEEecCCCceeeeEeeeccccCeeEEEEe-cCCee
Q 047325 298 LVFSGSADKTICVWRRDGAIHTCLSVLTGHTGPVKCLAVE-EDRDS 342 (368)
Q Consensus 298 ~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~l~~~-~~~~~ 342 (368)
+.++...++.|.+||.+++ +.+..+..+...+++++|. |++..
T Consensus 212 lwva~~~~~~v~~~d~~tG--~~~~~i~~p~~~~t~~~f~g~d~~~ 255 (297)
T 3g4e_A 212 LWVACYNGGRVIRLDPVTG--KRLQTVKLPVDKTTSCCFGGKNYSE 255 (297)
T ss_dssp EEEEEETTTEEEEECTTTC--CEEEEEECSSSBEEEEEEESGGGCE
T ss_pred EEEEEcCCCEEEEEcCCCc--eEEEEEECCCCCceEEEEeCCCCCE
Confidence 8888777889999987755 5666676676789999998 77764
No 200
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=99.50 E-value=4.5e-11 Score=98.85 Aligned_cols=234 Identities=12% Similarity=0.077 Sum_probs=143.2
Q ss_pred CCCeeEEEEe--CCEEEE-------EeCCCeEEEEeecCCCccccccCCccccceeeeeccCCCCceeEecccceeeeee
Q 047325 82 SGLVKAIVIS--GEKIFT-------GHQDGKIRVWKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIR 152 (368)
Q Consensus 82 ~~~v~~~~~~--~~~l~s-------~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (368)
-....+++|+ +..+++ +..++.|.+||..+++....... ...+
T Consensus 17 ~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~----------------------------~~~~ 68 (314)
T 1pjx_A 17 IPGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKP----------------------------EVNG 68 (314)
T ss_dssp CTTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECC----------------------------EETT
T ss_pred CCCccCceECCCCCEEEEEeccccCCCCCCEEEEEeCCCCcEEEEEec----------------------------ccCC
Confidence 3445788887 555555 46789999999876653211100 0001
Q ss_pred cCCCEeEEEEcCC-CCEEEEEeCCCcEEEEEccCCeEEEE-eec----CCCceEEEEeCCCC-eEEEEcCC---------
Q 047325 153 HSDAVSCMSLDQD-CGLLYTASWDRTFKVWRISDSKCLES-VSA----HDDAVNSVVSSSEG-LIFTGSAD--------- 216 (368)
Q Consensus 153 ~~~~v~~~~~~~~-~~~l~~~~~d~~i~iwd~~~~~~~~~-~~~----~~~~v~~~~~~~~~-~l~~~~~d--------- 216 (368)
+...+.+++++++ ++++ .++..+.|.+||.. ++.... ... ....+.++++.+++ .+++...+
T Consensus 69 ~~~~~~~i~~~~~~g~l~-v~~~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~ 146 (314)
T 1pjx_A 69 YGGIPAGCQCDRDANQLF-VADMRLGLLVVQTD-GTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTR 146 (314)
T ss_dssp EECCEEEEEECSSSSEEE-EEETTTEEEEEETT-SCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCB
T ss_pred CCCCCceEEEecCCCcEE-EEECCCCEEEEeCC-CCEEEEEeccCCCccccCCcCEEECCCCCEEEEecCcccccccccc
Confidence 3356889999998 6544 44445579999988 765433 221 12357899999999 44444443
Q ss_pred ------CeEEEEEcCCCCCCcccccceeeccccccEEEEEEc----CCCCEEEEe-cCCCcEEEEeCC-Cccc----cce
Q 047325 217 ------GTVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVS----SSRSIVYCG-SSDGLVNFWERE-KQLS----HGG 280 (368)
Q Consensus 217 ------g~i~i~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~----~~~~~l~~~-~~dg~i~i~d~~-~~~~----~~~ 280 (368)
+.|..+|.. . . .............++++ |+++.|+.+ ..++.|.+||.+ .+.. ...
T Consensus 147 ~~~~~~~~l~~~~~~-g-~------~~~~~~~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~ 218 (314)
T 1pjx_A 147 SMQEKFGSIYCFTTD-G-Q------MIQVDTAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWG 218 (314)
T ss_dssp TTSSSCEEEEEECTT-S-C------EEEEEEEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEE
T ss_pred cccCCCCeEEEECCC-C-C------EEEeccCCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEE
Confidence 567777654 2 1 11122233456788999 998765544 567899999976 2221 111
Q ss_pred eeeccc-e--EEEEEEeCCCEEEEeeCCCeEEEEecCCCceeeeEeeeccccCeeEEEEecCCe-eeecCCcceEEEEE
Q 047325 281 VLKGHK-L--AVLCLAAAGKLVFSGSADKTICVWRRDGAIHTCLSVLTGHTGPVKCLAVEEDRD-SSSSTSSCAQRWIV 355 (368)
Q Consensus 281 ~~~~~~-~--~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~-~~~~~~~~~~~w~l 355 (368)
....+. . .-++++++|+++++...++.|.+||.+++ +.+..+..+...+.+++|+|++. +.++......++.+
T Consensus 219 ~~~~~~~~~p~~i~~d~~G~l~v~~~~~~~i~~~d~~~g--~~~~~~~~~~~~~~~i~~~~dg~~l~v~~~~~~~l~~~ 295 (314)
T 1pjx_A 219 HIPGTHEGGADGMDFDEDNNLLVANWGSSHIEVFGPDGG--QPKMRIRCPFEKPSNLHFKPQTKTIFVTEHENNAVWKF 295 (314)
T ss_dssp ECCCCSSCEEEEEEEBTTCCEEEEEETTTEEEEECTTCB--SCSEEEECSSSCEEEEEECTTSSEEEEEETTTTEEEEE
T ss_pred ECCCCCCCCCCceEECCCCCEEEEEcCCCEEEEEcCCCC--cEeEEEeCCCCCceeEEECCCCCEEEEEeCCCCeEEEE
Confidence 122221 2 22556677888888778899999987744 34445555667899999999998 43444443444444
No 201
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=99.49 E-value=3.4e-10 Score=100.46 Aligned_cols=290 Identities=11% Similarity=0.090 Sum_probs=168.5
Q ss_pred CCCceeeeccCcCCcEEEEEecCC--EEEEccCCCcEEEEcCC--c--ceecccCCCCCeeEEEEe------CCEEEEEe
Q 047325 32 PQNGLIGSLVREEGHIYSLAASKD--LLYTGSDSKNIRVWKNL--K--EFCGFKASSGLVKAIVIS------GEKIFTGH 99 (368)
Q Consensus 32 ~~~~~~~~~~~h~~~i~~~~~~~~--~l~s~~~dg~i~iw~~~--~--~~~~~~~~~~~v~~~~~~------~~~l~s~~ 99 (368)
...+++.++... ..+..+.++++ ++++++.|+.|.+||+. + .+..+... .....++++ |++++++.
T Consensus 185 ~t~~v~~~i~~g-~~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~v~~i~~G-~~P~~ia~s~~~~pDGk~l~v~n 262 (567)
T 1qks_A 185 STYEIKTVLDTG-YAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIG-SEARSIETSKMEGWEDKYAIAGA 262 (567)
T ss_dssp TTCCEEEEEECS-SCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECC-SEEEEEEECCSTTCTTTEEEEEE
T ss_pred CCCeEEEEEeCC-CCccceEECCCCCEEEEEcCCCeEEEEECCCCCCcEeEEEecC-CCCceeEEccccCCCCCEEEEEE
Confidence 334555555432 24557777654 88888999999999984 2 22233332 234566776 66777665
Q ss_pred C-CCeEEEEeecCCCccccccCCcc----------ccceeeeeccCCCCceeEecccc-------------eeeeeecCC
Q 047325 100 Q-DGKIRVWKISPKNQSVHKRAGTL----------PTLKDIFKSSIKPSNYIEVRRHR-------------TALWIRHSD 155 (368)
Q Consensus 100 ~-dg~i~vw~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~ 155 (368)
. ++.|.++|..+.+.......... +....+......+..++...... .........
T Consensus 263 ~~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~~g~v~~vd~~~~~~~~v~~i~~~~ 342 (567)
T 1qks_A 263 YWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEISAER 342 (567)
T ss_dssp EETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSEEEEEEEECCS
T ss_pred ccCCeEEEEECCCCcEEEEEeccccccccccccCCCceEEEEEcCCCCEEEEEecCCCeEEEEecCCCccceeeeeeccc
Confidence 4 69999999888766544332211 01111111111111111111000 001112334
Q ss_pred CEeEEEEcCCCCEEEEEe-CCCcEEEEEccCCeEEEEeec-----CCCceEEEEeCCCC--eEEEEc-CCCeEEEEEcCC
Q 047325 156 AVSCMSLDQDCGLLYTAS-WDRTFKVWRISDSKCLESVSA-----HDDAVNSVVSSSEG--LIFTGS-ADGTVKVWKREQ 226 (368)
Q Consensus 156 ~v~~~~~~~~~~~l~~~~-~d~~i~iwd~~~~~~~~~~~~-----~~~~v~~~~~~~~~--~l~~~~-~dg~i~i~d~~~ 226 (368)
...++.|+|++++++++. .++.|.++|+.+++.+..+.. |.+.-.. .++|++ .++++. .++.|.++|...
T Consensus 343 ~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t~kl~~~i~vgg~~Phpg~g~~-~~~p~~g~v~~t~~~g~~~Vsvid~~~ 421 (567)
T 1qks_A 343 FLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGAN-FVHPTFGPVWATSHMGDDSVALIGTDP 421 (567)
T ss_dssp SEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSSBCCTTCEE-EEETTTEEEEEEEBSSSSEEEEEECCT
T ss_pred cccCceECCCCCEEEEEeCCCCeEEEEECCCCcEEEEEeccCcCCCCcccee-eECCCCCcEEEeCCCCCCeEEEecCCC
Confidence 566789999999887766 578999999999998777654 3221112 257774 444443 468999999876
Q ss_pred CCC-CcccccceeeccccccEEEEEEcCCCCEEEEecC-------CCcEEEEeCCCc-----cccceeee----------
Q 047325 227 HGK-GTKHSLAQTLLKQECAVTALVVSSSRSIVYCGSS-------DGLVNFWEREKQ-----LSHGGVLK---------- 283 (368)
Q Consensus 227 ~~~-~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-------dg~i~i~d~~~~-----~~~~~~~~---------- 283 (368)
.+. ....+.+..+......-..+..+|++++|.+... .+.|.++|+.+. ......+.
T Consensus 422 ~~~~~~~~kvv~~i~~~g~g~~~i~~~p~~~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~g~~~~~~~~~~~~~~~~~~~ 501 (567)
T 1qks_A 422 EGHPDNAWKILDSFPALGGGSLFIKTHPNSQYLYVDATLNPEAEISGSVAVFDIKAMTGDGSDPEFKTLPIAEWAGITEG 501 (567)
T ss_dssp TTCTTTBTSEEEEEECSCSCCCCEECCTTCSEEEEECTTCSSHHHHTCEEEEEGGGCCCSSSCCCEEEECHHHHHTCCSS
T ss_pred CCCccccCEEEEEEecCCCCCEEEEeCCCCCeEEEecCCCCCcccCceEEEEECCcccccccCCCcEEeccccccccCCC
Confidence 321 1112344444443333345778999999998663 358999998865 22111221
Q ss_pred ccceEEEEEEeCCCEEEEee-----CCCeEEEEecCCCceeeeEeeec
Q 047325 284 GHKLAVLCLAAAGKLVFSGS-----ADKTICVWRRDGAIHTCLSVLTG 326 (368)
Q Consensus 284 ~~~~~~~~~~~~~~~l~~~~-----~dg~i~iw~~~~~~~~~~~~~~~ 326 (368)
+....-..++++|+.+..+. .++.|.|+|..+. +.+..++.
T Consensus 502 ~~~~~~~~~~~~G~~~~~s~~~~~~~~~~i~v~D~~t~--~~~~~i~~ 547 (567)
T 1qks_A 502 QPRVVQGEFNKDGTEVWFSVWNGKDQESALVVVDDKTL--ELKHVIKD 547 (567)
T ss_dssp CCEEEEEEECTTSSEEEEEEECCTTSCCEEEEEETTTT--EEEEEECC
T ss_pred CcceEeeeECCCCCEEEEEeecCCCCCCcEEEEECCCc--eEEEEeCC
Confidence 11222356667888777663 3799999988776 55566553
No 202
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=99.48 E-value=3.6e-11 Score=102.89 Aligned_cols=218 Identities=8% Similarity=0.072 Sum_probs=140.6
Q ss_pred CCeeEEEEe--CCEEEEEeCCCeEEEEeecCCCccccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEE
Q 047325 83 GLVKAIVIS--GEKIFTGHQDGKIRVWKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCM 160 (368)
Q Consensus 83 ~~v~~~~~~--~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 160 (368)
.....|+++ ++.+++...++.|++||.+++....... ...... +
T Consensus 131 ~~P~~la~d~~g~lyv~d~~~~~I~~id~~~g~~~~~~~---------------------------------~~~~~~-i 176 (409)
T 3hrp_A 131 KYMWGIAAVGNNTVLAYQRDDPRVRLISVDDNKVTTVHP---------------------------------GFKGGK-P 176 (409)
T ss_dssp CCEEEEEECSTTEEEEEETTTTEEEEEETTTTEEEEEEE---------------------------------TCCBCB-C
T ss_pred CCceEEEEeCCCCEEEEecCCCcEEEEECCCCEEEEeec---------------------------------cCCCCc-e
Confidence 356788887 4555555567899999987664321111 112223 8
Q ss_pred EEcCCCCEEEEEeCCC--cEEEEEccCCeEEEEe---ec-CCCceEEEEeCC-CCeEEEEcCCCeEEEEEcCCCCCCccc
Q 047325 161 SLDQDCGLLYTASWDR--TFKVWRISDSKCLESV---SA-HDDAVNSVVSSS-EGLIFTGSADGTVKVWKREQHGKGTKH 233 (368)
Q Consensus 161 ~~~~~~~~l~~~~~d~--~i~iwd~~~~~~~~~~---~~-~~~~v~~~~~~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~ 233 (368)
+|+++++.|+++..++ .|..+|...+.....+ .. ....+.+++++| ++.|+.+..++.|+.||......
T Consensus 177 a~~~~g~~l~~~d~~~~~~I~~~d~~~~~~~~~~g~~~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~~---- 252 (409)
T 3hrp_A 177 AVTKDKQRVYSIGWEGTHTVYVYMKASGWAPTRIGQLGSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEV---- 252 (409)
T ss_dssp EECTTSSEEEEEBSSTTCEEEEEEGGGTTCEEEEEECCTTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCCE----
T ss_pred eEecCCCcEEEEecCCCceEEEEEcCCCceeEEeeeccchhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCCE----
Confidence 9999999999888766 7999998765543333 12 445678899999 56666677789999999875421
Q ss_pred cccee--ecccccc--EEEEEEcCC-CCEEEEecCCCcEEEEeCCCccccceeeecc-----------------ceEEEE
Q 047325 234 SLAQT--LLKQECA--VTALVVSSS-RSIVYCGSSDGLVNFWEREKQLSHGGVLKGH-----------------KLAVLC 291 (368)
Q Consensus 234 ~~~~~--~~~~~~~--i~~~~~~~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~-----------------~~~~~~ 291 (368)
..... ..+.... ...++|+|+ +.++++-..++.|+.|+...... .+.++ ...-++
T Consensus 253 ~~~~~~~~~g~~~~~P~~~ia~~p~~g~lyv~d~~~~~I~~~~~~g~~~---~~~g~~~~~g~~dg~~~~~~~~~P~gia 329 (409)
T 3hrp_A 253 TLIKQLELSGSLGTNPGPYLIYYFVDSNFYMSDQNLSSVYKITPDGECE---WFCGSATQKTVQDGLREEALFAQPNGMT 329 (409)
T ss_dssp EEEEECCCCSCCCCSSCCEEEEETTTTEEEEEETTTTEEEEECTTCCEE---EEEECTTCCSCBCEEGGGCBCSSEEEEE
T ss_pred EEEecccccCCCCCCccccEEEeCCCCEEEEEeCCCCEEEEEecCCCEE---EEEeCCCCCCcCCCcccccEeCCCeEEE
Confidence 11100 1111111 128999995 66666667788999999765311 11111 123367
Q ss_pred EEeCCCEEEEee-CCCeEEEEecCCCceeeeEeeecc---------------ccCeeEEEEecCCeeee
Q 047325 292 LAAAGKLVFSGS-ADKTICVWRRDGAIHTCLSVLTGH---------------TGPVKCLAVEEDRDSSS 344 (368)
Q Consensus 292 ~~~~~~~l~~~~-~dg~i~iw~~~~~~~~~~~~~~~h---------------~~~v~~l~~~~~~~~~~ 344 (368)
++++++++++-. .++.|+.|++..+. +..+.++ -.....|++++++.+++
T Consensus 330 ~d~dG~lyvad~~~~~~I~~~~~~~G~---v~~~~g~~~~~g~~~g~~~~~~~~~P~giavd~~g~lyV 395 (409)
T 3hrp_A 330 VDEDGNFYIVDGFKGYCLRKLDILDGY---VSTVAGQVDVASQIDGTPLEATFNYPYDICYDGEGGYWI 395 (409)
T ss_dssp ECTTCCEEEEETTTTCEEEEEETTTTE---EEEEEECTTCBSCCCBSTTTCCBSSEEEEEECSSSEEEE
T ss_pred EeCCCCEEEEeCCCCCEEEEEECCCCE---EEEEeCCCCCCCcCCCChhceEeCCceEEEEcCCCCEEE
Confidence 778899888877 88999999966552 2333333 24588999999988433
No 203
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=99.47 E-value=1e-10 Score=100.10 Aligned_cols=230 Identities=10% Similarity=0.094 Sum_probs=145.7
Q ss_pred CcEEEEEecCC--EEEEccCCCcEEEEcCCcc-eecccCCCCCeeEEEEe--CCEEEEEeCCC--eEEEEeecCCCcccc
Q 047325 45 GHIYSLAASKD--LLYTGSDSKNIRVWKNLKE-FCGFKASSGLVKAIVIS--GEKIFTGHQDG--KIRVWKISPKNQSVH 117 (368)
Q Consensus 45 ~~i~~~~~~~~--~l~s~~~dg~i~iw~~~~~-~~~~~~~~~~v~~~~~~--~~~l~s~~~dg--~i~vw~~~~~~~~~~ 117 (368)
.....|+++++ ++++...++.|++||.... +..+........ ++++ ++.|+++..++ .|.+++...+.....
T Consensus 131 ~~P~~la~d~~g~lyv~d~~~~~I~~id~~~g~~~~~~~~~~~~~-ia~~~~g~~l~~~d~~~~~~I~~~d~~~~~~~~~ 209 (409)
T 3hrp_A 131 KYMWGIAAVGNNTVLAYQRDDPRVRLISVDDNKVTTVHPGFKGGK-PAVTKDKQRVYSIGWEGTHTVYVYMKASGWAPTR 209 (409)
T ss_dssp CCEEEEEECSTTEEEEEETTTTEEEEEETTTTEEEEEEETCCBCB-CEECTTSSEEEEEBSSTTCEEEEEEGGGTTCEEE
T ss_pred CCceEEEEeCCCCEEEEecCCCcEEEEECCCCEEEEeeccCCCCc-eeEecCCCcEEEEecCCCceEEEEEcCCCceeEE
Confidence 35778888755 6677777899999998743 333222222223 6666 77888888766 788888765432111
Q ss_pred ccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcCCCCEEEEEeCCCcEEEEEccCCeEEEE----ee
Q 047325 118 KRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCGLLYTASWDRTFKVWRISDSKCLES----VS 193 (368)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~----~~ 193 (368)
... . .......+.+++++|++..|+.+..++.|..||..++..... ..
T Consensus 210 ~g~--~--------------------------~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~~~~~~~~~~~ 261 (409)
T 3hrp_A 210 IGQ--L--------------------------GSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEVTLIKQLELS 261 (409)
T ss_dssp EEE--C--------------------------CTTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCCEEEEEECCCC
T ss_pred eee--c--------------------------cchhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCCEEEEeccccc
Confidence 100 0 000234567899999555666677788999999987754322 22
Q ss_pred cCCCce--EEEEeCCC-C-eEEEEcCCCeEEEEEcCCCCCCcccccceeeccc---------------cccEEEEEEcCC
Q 047325 194 AHDDAV--NSVVSSSE-G-LIFTGSADGTVKVWKREQHGKGTKHSLAQTLLKQ---------------ECAVTALVVSSS 254 (368)
Q Consensus 194 ~~~~~v--~~~~~~~~-~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~---------------~~~i~~~~~~~~ 254 (368)
++...- ..++++|+ + ++++-..++.|+.|+.... ...+.++ -.....++++|+
T Consensus 262 g~~~~~P~~~ia~~p~~g~lyv~d~~~~~I~~~~~~g~--------~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~d 333 (409)
T 3hrp_A 262 GSLGTNPGPYLIYYFVDSNFYMSDQNLSSVYKITPDGE--------CEWFCGSATQKTVQDGLREEALFAQPNGMTVDED 333 (409)
T ss_dssp SCCCCSSCCEEEEETTTTEEEEEETTTTEEEEECTTCC--------EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTT
T ss_pred CCCCCCccccEEEeCCCCEEEEEeCCCCEEEEEecCCC--------EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCC
Confidence 222222 28999995 5 5566667889999987632 1111111 134789999999
Q ss_pred CCEEEEec-CCCcEEEEeCCCccccceeeecc-----------------ceEEEEEEeCCCEEEEeeCCCeEEEEec
Q 047325 255 RSIVYCGS-SDGLVNFWEREKQLSHGGVLKGH-----------------KLAVLCLAAAGKLVFSGSADKTICVWRR 313 (368)
Q Consensus 255 ~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~l~~~~~dg~i~iw~~ 313 (368)
++++++-. .++.|+.|++.++... .+.++ ...-+++++++.++++-..++.|+.+++
T Consensus 334 G~lyvad~~~~~~I~~~~~~~G~v~--~~~g~~~~~g~~~g~~~~~~~~~P~giavd~~g~lyVad~~n~~Ir~i~~ 408 (409)
T 3hrp_A 334 GNFYIVDGFKGYCLRKLDILDGYVS--TVAGQVDVASQIDGTPLEATFNYPYDICYDGEGGYWIAEAWGKAIRKYAV 408 (409)
T ss_dssp CCEEEEETTTTCEEEEEETTTTEEE--EEEECTTCBSCCCBSTTTCCBSSEEEEEECSSSEEEEEESTTCEEEEEEE
T ss_pred CCEEEEeCCCCCEEEEEECCCCEEE--EEeCCCCCCCcCCCChhceEeCCceEEEEcCCCCEEEEECCCCeEEEEEe
Confidence 99888877 8899999997655432 22221 1233667777777777777888887764
No 204
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=99.47 E-value=3.6e-12 Score=106.69 Aligned_cols=171 Identities=10% Similarity=-0.011 Sum_probs=122.4
Q ss_pred CEeEEEEcCCCCEEEEEeCCCcEEEEEccCCe-----------EEEEeecCCCceEEEEeCCCC-eEEEEcCCCeEEEEE
Q 047325 156 AVSCMSLDQDCGLLYTASWDRTFKVWRISDSK-----------CLESVSAHDDAVNSVVSSSEG-LIFTGSADGTVKVWK 223 (368)
Q Consensus 156 ~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~-----------~~~~~~~~~~~v~~~~~~~~~-~l~~~~~dg~i~i~d 223 (368)
.+..+++++...++++|+.++ +.+|++.+.+ +.... .+.. |..++| ++ .|+++ .++.|++||
T Consensus 39 ~~nlLais~~~gll~a~~~~~-l~v~~~~~l~~~~~~~~~~~~~~~~~-~lp~-V~~l~f--d~~~L~v~-~~~~l~v~d 112 (388)
T 1xip_A 39 SLQNLDISNSKSLFVAASGSK-AVVGELQLLRDHITSDSTPLTFKWEK-EIPD-VIFVCF--HGDQVLVS-TRNALYSLD 112 (388)
T ss_dssp CCBCEEEETTTTEEEEEETTE-EEEEEHHHHHHHHHSSSCCCCCSEEE-ECTT-EEEEEE--ETTEEEEE-ESSEEEEEE
T ss_pred cccEEEEcCCCCEEEEeCCCE-EEEEEhhHhhhhhccccccccceEEe-eCCC-eeEEEE--CCCEEEEE-cCCcEEEEE
Confidence 688999999999999999875 6679875433 11222 3555 999999 55 77777 889999999
Q ss_pred cCCCCCCcccccceeeccccccEEEEEEcCCCCEEEEecCCCcEEEEeCCCccccceeeeccceEEEEEEeCCCEEEEee
Q 047325 224 REQHGKGTKHSLAQTLLKQECAVTALVVSSSRSIVYCGSSDGLVNFWEREKQLSHGGVLKGHKLAVLCLAAAGKLVFSGS 303 (368)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 303 (368)
++.... ......++..+..+.+.+. .+++++.||.|.+||+.++... . +...+.|+++..+-++.|.
T Consensus 113 v~sl~~------~~~~~~~~~~v~~i~~~~p--~~av~~~dG~L~v~dl~~~~~~-~----~~~~Vs~v~WSpkG~~vg~ 179 (388)
T 1xip_A 113 LEELSE------FRTVTSFEKPVFQLKNVNN--TLVILNSVNDLSALDLRTKSTK-Q----LAQNVTSFDVTNSQLAVLL 179 (388)
T ss_dssp SSSTTC------EEEEEECSSCEEEEEECSS--EEEEEETTSEEEEEETTTCCEE-E----EEESEEEEEECSSEEEEEE
T ss_pred chhhhc------cCccceeecceeeEEecCC--CEEEEECCCCEEEEEccCCccc-c----ccCCceEEEEcCCceEEEE
Confidence 986532 2233445566778777654 3888899999999999865542 1 2234444444433378899
Q ss_pred CCCeEEEEecCCCceeeeEee------e---ccccCeeEEEEecCCeeeec
Q 047325 304 ADKTICVWRRDGAIHTCLSVL------T---GHTGPVKCLAVEEDRDSSSS 345 (368)
Q Consensus 304 ~dg~i~iw~~~~~~~~~~~~~------~---~h~~~v~~l~~~~~~~~~~~ 345 (368)
.||.+++|+.+........++ . +|...|.+|.|.+++.++++
T Consensus 180 ~dg~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~ 230 (388)
T 1xip_A 180 KDRSFQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAV 230 (388)
T ss_dssp TTSCEEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEE
T ss_pred cCCcEEEEcCCCccccccceecCCcccccccCCCeeEEEEEEecCCeEEEE
Confidence 999999998877632113344 2 37788999999999998775
No 205
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=99.47 E-value=2.4e-10 Score=96.48 Aligned_cols=246 Identities=8% Similarity=-0.028 Sum_probs=147.2
Q ss_pred cEEEEcCCcc--eecccCCCCCeeEEEEe--CCEEEEEe----------CCCeEEEEeecCCCccccccCCccccceeee
Q 047325 65 NIRVWKNLKE--FCGFKASSGLVKAIVIS--GEKIFTGH----------QDGKIRVWKISPKNQSVHKRAGTLPTLKDIF 130 (368)
Q Consensus 65 ~i~iw~~~~~--~~~~~~~~~~v~~~~~~--~~~l~s~~----------~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~ 130 (368)
+|.++|..+. +..+.....+ .+.++ +++++.+. .++.|.+||..+.+............
T Consensus 48 ~v~v~D~~t~~~~~~i~~g~~p--~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~~~~~i~~~~~~~----- 120 (373)
T 2mad_H 48 QQWVLDAGSGSILGHVNGGFLP--NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPR----- 120 (373)
T ss_pred EEEEEECCCCeEEEEecCCCCC--CeEECCCCCEEEEEeccccccccCCCCCeEEEEECCCCcEEEEEECCCccc-----
Confidence 7899997643 2233332333 66666 77888875 36789999998765433222110000
Q ss_pred eccCCCCceeEecccceeeeeecCCCEeEEEEcCCCCEEEEEeC--CCcEEEEEccCCeEEEE-eecCCCceEEEEeCCC
Q 047325 131 KSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCGLLYTASW--DRTFKVWRISDSKCLES-VSAHDDAVNSVVSSSE 207 (368)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~--d~~i~iwd~~~~~~~~~-~~~~~~~v~~~~~~~~ 207 (368)
.. +......+.++||+++|+++.. ++.|.++| .+++.+.. +.... ++.+.|+
T Consensus 121 ------------------~~--~g~~p~~~~~spDG~~l~v~n~~~~~~v~viD-~t~~~~~~~i~~~~----~~~~~~~ 175 (373)
T 2mad_H 121 ------------------FD--VGPYSWMNANTPNNADLLFFQFAAGPAVGLVV-QGGSSDDQLLSSPT----CYHIHPG 175 (373)
T ss_pred ------------------cc--cCCCccceEECCCCCEEEEEecCCCCeEEEEE-CCCCEEeEEcCCCc----eEEEEeC
Confidence 00 1123347899999999998874 47899999 99998877 65322 2334454
Q ss_pred C--eEEEEcCCCeEEEEEcCCCCCCcccccceeecccccc-EEEEEEcCCCCEEEEecCCCcEEEEeCCCcccc-ceee-
Q 047325 208 G--LIFTGSADGTVKVWKREQHGKGTKHSLAQTLLKQECA-VTALVVSSSRSIVYCGSSDGLVNFWEREKQLSH-GGVL- 282 (368)
Q Consensus 208 ~--~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~-i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~-~~~~- 282 (368)
+ .+++.+.||.+.++|. .+............ ....+ .....+.+++..++..+.++.+.+.|+...... ...+
T Consensus 176 ~~~~~~~~~~dg~~~~vd~-~g~~~~~~~~~~~~-~~~~p~~~~~~~~~~~~~~~~~~~~~~v~vid~~~~~~~v~~~~~ 253 (373)
T 2mad_H 176 APSTFYLLCAQGGLAKTDH-AGGAAGAGLVGAML-TAAQNLLTQPAQANKSGRIVWPVYSGKILQADISAAGATNKAPID 253 (373)
T ss_pred CCceEEEEcCCCCEEEEEC-CCcEEEEEeccccc-cCCcceeecceeEecCCEEEEEcCCceEEEEeccCCcceEeeeee
Confidence 4 6667788999999999 54321000000001 11112 123455666555554457789999998653211 0111
Q ss_pred -----------eccceEEEEEEeCCCEEEEeeC----------CCeEEEEecCCCceeeeEeeeccccCeeEEEEecCCe
Q 047325 283 -----------KGHKLAVLCLAAAGKLVFSGSA----------DKTICVWRRDGAIHTCLSVLTGHTGPVKCLAVEEDRD 341 (368)
Q Consensus 283 -----------~~~~~~~~~~~~~~~~l~~~~~----------dg~i~iw~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~ 341 (368)
.......+.++++++.++++.. ++.|.++|..+. +.+.++. -.....+++|+|||+
T Consensus 254 ~~~~~~~~~~~~p~g~~~~~~s~d~~~lyV~~~~~~~~~~~~~~~~V~VID~~t~--~vv~~i~-~g~~p~~i~~s~Dg~ 330 (373)
T 2mad_H 254 ALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVG--QTSSQIS-LGHDVDAISVAQDGG 330 (373)
T ss_pred ecCCcccccceecCceEeEEECCCCCEEEEEeccCCcccccCCCCeEEEEECCCC--EEEEEEE-CCCCcCeEEECCCCC
Confidence 1122233678888888777653 357999988776 6666664 334689999999998
Q ss_pred -eeecCC
Q 047325 342 -SSSSTS 347 (368)
Q Consensus 342 -~~~~~~ 347 (368)
.+.++.
T Consensus 331 ~~l~v~~ 337 (373)
T 2mad_H 331 PDLYALS 337 (373)
T ss_pred eEEEEEc
Confidence 554443
No 206
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=99.46 E-value=2.3e-10 Score=93.81 Aligned_cols=227 Identities=11% Similarity=0.079 Sum_probs=137.6
Q ss_pred cEEEEEecCC---EEEEccCCCcEEEEcCCcceecccCCCCCeeEEEEe--CCEEEEEeCCCeEEEEeecCCCccccccC
Q 047325 46 HIYSLAASKD---LLYTGSDSKNIRVWKNLKEFCGFKASSGLVKAIVIS--GEKIFTGHQDGKIRVWKISPKNQSVHKRA 120 (368)
Q Consensus 46 ~i~~~~~~~~---~l~s~~~dg~i~iw~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~vw~~~~~~~~~~~~~ 120 (368)
-..+..|+++ ++++...++.|..||..............+.+++++ ++ |+.+. ++.|.+||.++++.......
T Consensus 14 ~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~~~~~~~~~~~~i~~~~dG~-l~v~~-~~~l~~~d~~~g~~~~~~~~ 91 (297)
T 3g4e_A 14 CGESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQVQRVTMDAPVSSVALRQSGG-YVATI-GTKFCALNWKEQSAVVLATV 91 (297)
T ss_dssp BEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEECSSCEEEEEEBTTSS-EEEEE-TTEEEEEETTTTEEEEEEEC
T ss_pred cccCCeEECCCCEEEEEECCCCEEEEEECCCCcEEEEeCCCceEEEEECCCCC-EEEEE-CCeEEEEECCCCcEEEEEec
Confidence 3446677652 777778889999999875433333345678999998 55 55555 56889999876643211110
Q ss_pred CccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcCCCCEEEEEeCC---------CcEEEEEccC-CeEEE
Q 047325 121 GTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCGLLYTASWD---------RTFKVWRISD-SKCLE 190 (368)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---------~~i~iwd~~~-~~~~~ 190 (368)
... .....+..++++|+|+++++...+ ..-.+|.+.. ++...
T Consensus 92 ~~~----------------------------~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~ 143 (297)
T 3g4e_A 92 DND----------------------------KKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPDHHVKK 143 (297)
T ss_dssp CTT----------------------------CSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTTSCEEE
T ss_pred CCC----------------------------CCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECCCCEEE
Confidence 000 012347889999999866654321 2234554432 33333
Q ss_pred EeecCCCceEEEEeCCCC-eE-EEEcCCCeEEEEEcCC-CCCCcccccceeeccccccEEEEEEcCCCCEEEEecCCCcE
Q 047325 191 SVSAHDDAVNSVVSSSEG-LI-FTGSADGTVKVWKREQ-HGKGTKHSLAQTLLKQECAVTALVVSSSRSIVYCGSSDGLV 267 (368)
Q Consensus 191 ~~~~~~~~v~~~~~~~~~-~l-~~~~~dg~i~i~d~~~-~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i 267 (368)
+.......+.++|+|++ .| ++.+.++.|..||+.. .+..........+......+..++++++|++.++....+.|
T Consensus 144 -~~~~~~~pngi~~spdg~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~lwva~~~~~~v 222 (297)
T 3g4e_A 144 -YFDQVDISNGLDWSLDHKIFYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGKLWVACYNGGRV 222 (297)
T ss_dssp -EEEEESBEEEEEECTTSCEEEEEEGGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTSCEEEEEETTTEE
T ss_pred -EeeccccccceEEcCCCCEEEEecCCCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCCCEEEEEcCCCEE
Confidence 33333456889999998 44 5666789999999842 21111111122223344567899999999888887778889
Q ss_pred EEEeCCCccccceeeecc--ceEEEEEE-eCCCEEEEeeC
Q 047325 268 NFWEREKQLSHGGVLKGH--KLAVLCLA-AAGKLVFSGSA 304 (368)
Q Consensus 268 ~i~d~~~~~~~~~~~~~~--~~~~~~~~-~~~~~l~~~~~ 304 (368)
..||.++++... .+..+ ....++|. ++++.|++++.
T Consensus 223 ~~~d~~tG~~~~-~i~~p~~~~t~~~f~g~d~~~L~vt~~ 261 (297)
T 3g4e_A 223 IRLDPVTGKRLQ-TVKLPVDKTTSCCFGGKNYSEMYVTCA 261 (297)
T ss_dssp EEECTTTCCEEE-EEECSSSBEEEEEEESGGGCEEEEEEB
T ss_pred EEEcCCCceEEE-EEECCCCCceEEEEeCCCCCEEEEEcC
Confidence 999998665543 33333 23335555 56666555443
No 207
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=99.45 E-value=1.1e-11 Score=114.84 Aligned_cols=224 Identities=13% Similarity=0.042 Sum_probs=139.8
Q ss_pred CCCCeeEEEEe--CCEEEEEeCC-----CeEEEEeecCCCccccccCCccccceeeeeccCCCCceeEecccceeeeeec
Q 047325 81 SSGLVKAIVIS--GEKIFTGHQD-----GKIRVWKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRH 153 (368)
Q Consensus 81 ~~~~v~~~~~~--~~~l~s~~~d-----g~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (368)
|...+..+.|+ |++|+.++.+ ..|++||+.+++...... +
T Consensus 161 ~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~tg~~~~~~~---------------------------------~ 207 (741)
T 1yr2_A 161 GATALDAWAASDDGRLLAYSVQDGGSDWRTVKFVGVADGKPLADEL---------------------------------K 207 (741)
T ss_dssp --EEEEEEEECTTSSEEEEEEEETTCSEEEEEEEETTTCCEEEEEE---------------------------------E
T ss_pred CCEEEEeEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCCccC---------------------------------C
Confidence 33467788888 7788776543 369999999886421100 1
Q ss_pred CCCEeEEEEcCCCCEEEEEeCCCc--------------EEEEEccCCe----EEEEeecCCCceEEEEeCCCC-eEEEEc
Q 047325 154 SDAVSCMSLDQDCGLLYTASWDRT--------------FKVWRISDSK----CLESVSAHDDAVNSVVSSSEG-LIFTGS 214 (368)
Q Consensus 154 ~~~v~~~~~~~~~~~l~~~~~d~~--------------i~iwd~~~~~----~~~~~~~~~~~v~~~~~~~~~-~l~~~~ 214 (368)
...+..++|+|| +.|+.+..++. |.+|++.+++ .+.....+...+..+.|+|+| +|+..+
T Consensus 208 ~~~~~~~~wspD-~~l~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~ 286 (741)
T 1yr2_A 208 WVKFSGLAWLGN-DALLYSRFAEPKEGQAFQALNYNQTVWLHRLGTPQSADQPVFATPELPKRGHGASVSSDGRWVVITS 286 (741)
T ss_dssp EEESCCCEESTT-SEEEEEECCCC--------CCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEE
T ss_pred CceeccEEEECC-CEEEEEEecCcccccccccCCCCCEEEEEECCCCchhCEEEeccCCCCeEEEEEEECCCCCEEEEEE
Confidence 112346899999 98888876654 8899987765 222222233458899999999 666655
Q ss_pred CC-----CeEEEEEcCCCCCCcccccceeeccccccEEEEEEcCCCCEEEEecC----CCcEEEEeCCCcc-ccceeeec
Q 047325 215 AD-----GTVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSSSRSIVYCGSS----DGLVNFWEREKQL-SHGGVLKG 284 (368)
Q Consensus 215 ~d-----g~i~i~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~----dg~i~i~d~~~~~-~~~~~~~~ 284 (368)
.+ ..|++||+..+.. .....+..+........ +|+++.|+..+. ++.|.+||+.++. ........
T Consensus 287 ~~~~~~~~~l~~~d~~~~~~----~~~~~l~~~~~~~~~~~-~~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l~~~ 361 (741)
T 1yr2_A 287 SEGTDPVNTVHVARVTNGKI----GPVTALIPDLKAQWDFV-DGVGDQLWFVSGDGAPLKKIVRVDLSGSTPRFDTVVPE 361 (741)
T ss_dssp ECTTCSCCEEEEEEEETTEE----CCCEEEECSSSSCEEEE-EEETTEEEEEECTTCTTCEEEEEECSSSSCEEEEEECC
T ss_pred EccCCCcceEEEEECCCCCC----cccEEecCCCCceEEEE-eccCCEEEEEECCCCCCCEEEEEeCCCCccccEEEecC
Confidence 43 4899999875410 00222333333333333 488888877665 3459999988642 22233444
Q ss_pred cceEEEEEEe-CCCEEEEeeCCCeEEEEecCCCceeeeEeeec-cccCeeEEEEecCCeeee
Q 047325 285 HKLAVLCLAA-AGKLVFSGSADKTICVWRRDGAIHTCLSVLTG-HTGPVKCLAVEEDRDSSS 344 (368)
Q Consensus 285 ~~~~~~~~~~-~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~-h~~~v~~l~~~~~~~~~~ 344 (368)
+...+..+++ ++.++++...|+..++|.++.. ......+.. +...+..++++|++..++
T Consensus 362 ~~~~l~~~~~~~~~lv~~~~~dg~~~l~~~~~~-g~~~~~l~~~~~~~v~~~~~s~d~~~l~ 422 (741)
T 1yr2_A 362 SKDNLESVGIAGNRLFASYIHDAKSQVLAFDLD-GKPAGAVSLPGIGSASGLSGRPGDRHAY 422 (741)
T ss_dssp CSSEEEEEEEEBTEEEEEEEETTEEEEEEEETT-SCEEEECBCSSSCEEEEEECCBTCSCEE
T ss_pred CCCeEEEEEEECCEEEEEEEECCEEEEEEEeCC-CCceeeccCCCCeEEEEeecCCCCCEEE
Confidence 4444545555 4567788888998888866532 133444443 356788999999987555
No 208
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=99.44 E-value=6.7e-11 Score=100.51 Aligned_cols=236 Identities=8% Similarity=0.038 Sum_probs=137.4
Q ss_pred EEecCCEEEEccCCCcEEEEcCCccee--cccCCCCCeeEEEEeCCEEEEEeCCCeEEEEeecCCCccccccCCccccce
Q 047325 50 LAASKDLLYTGSDSKNIRVWKNLKEFC--GFKASSGLVKAIVISGEKIFTGHQDGKIRVWKISPKNQSVHKRAGTLPTLK 127 (368)
Q Consensus 50 ~~~~~~~l~s~~~dg~i~iw~~~~~~~--~~~~~~~~v~~~~~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~ 127 (368)
+...++.++.++.++.|..+|..+... .+.............++.++.++.++.|..+|..+++............
T Consensus 99 ~~~~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~p~~~~~~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~~~-- 176 (376)
T 3q7m_A 99 VTVSGGHVYIGSEKAQVYALNTSDGTVAWQTKVAGEALSRPVVSDGLVLIHTSNGQLQALNEADGAVKWTVNLDMPSL-- 176 (376)
T ss_dssp EEEETTEEEEEETTSEEEEEETTTCCEEEEEECSSCCCSCCEEETTEEEEECTTSEEEEEETTTCCEEEEEECCC-----
T ss_pred ceEeCCEEEEEcCCCEEEEEECCCCCEEEEEeCCCceEcCCEEECCEEEEEcCCCeEEEEECCCCcEEEEEeCCCCce--
Confidence 334455677777778888888764322 2222222222233446777888888888888887776544332211000
Q ss_pred eeeeccCCCCceeEecccceeeeeecCCCEeEEEEcCCCCEEEEEeCCCcEEEEEccCCeEEEEeecCCCc----eE---
Q 047325 128 DIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCGLLYTASWDRTFKVWRISDSKCLESVSAHDDA----VN--- 200 (368)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~----v~--- 200 (368)
....... .... +..++++..++.|..+|..+++.+......... +.
T Consensus 177 ---------------------~~~~~~~----~~~~--~~~v~~g~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~ 229 (376)
T 3q7m_A 177 ---------------------SLRGESA----PTTA--FGAAVVGGDNGRVSAVLMEQGQMIWQQRISQATGSTEIDRLS 229 (376)
T ss_dssp -----------------------CCCCC----CEEE--TTEEEECCTTTEEEEEETTTCCEEEEEECCC-----------
T ss_pred ---------------------eecCCCC----cEEE--CCEEEEEcCCCEEEEEECCCCcEEEEEecccCCCCccccccc
Confidence 0000011 1111 346788888999999999999988766532110 00
Q ss_pred EEEeC---CCCeEEEEcCCCeEEEEEcCCCCCCcccccceeeccccccEEEEEEcCCCCEEEEecCCCcEEEEeCCCccc
Q 047325 201 SVVSS---SEGLIFTGSADGTVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSSSRSIVYCGSSDGLVNFWEREKQLS 277 (368)
Q Consensus 201 ~~~~~---~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~ 277 (368)
.+... .++.++.++.++.+..+|.+++.. .-... ......+.. ++..++.++.++.+..+|.++++.
T Consensus 230 ~~~~~p~~~~~~v~~~~~~g~l~~~d~~tG~~------~w~~~--~~~~~~~~~--~~~~l~~~~~~g~l~~~d~~tG~~ 299 (376)
T 3q7m_A 230 DVDTTPVVVNGVVFALAYNGNLTALDLRSGQI------MWKRE--LGSVNDFIV--DGNRIYLVDQNDRVMALTIDGGVT 299 (376)
T ss_dssp CCCCCCEEETTEEEEECTTSCEEEEETTTCCE------EEEEC--CCCEEEEEE--ETTEEEEEETTCCEEEEETTTCCE
T ss_pred ccCCCcEEECCEEEEEecCcEEEEEECCCCcE------Eeecc--CCCCCCceE--ECCEEEEEcCCCeEEEEECCCCcE
Confidence 01111 245788888899999999987632 11111 122333433 356788888899999999988766
Q ss_pred cceeeeccceEEEEEEeCCCEEEEeeCCCeEEEEecCCCceeeeEeeec
Q 047325 278 HGGVLKGHKLAVLCLAAAGKLVFSGSADKTICVWRRDGAIHTCLSVLTG 326 (368)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~ 326 (368)
..................+..|+.++.+|.|+++|..++ +.+.....
T Consensus 300 ~w~~~~~~~~~~~~~~~~~~~l~v~~~~g~l~~~d~~tG--~~~~~~~~ 346 (376)
T 3q7m_A 300 LWTQSDLLHRLLTSPVLYNGNLVVGDSEGYLHWINVEDG--RFVAQQKV 346 (376)
T ss_dssp EEEECTTTTSCCCCCEEETTEEEEECTTSEEEEEETTTC--CEEEEEEC
T ss_pred EEeecccCCCcccCCEEECCEEEEEeCCCeEEEEECCCC--cEEEEEec
Confidence 533221111112222234678888999999999998876 44554443
No 209
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=99.44 E-value=7.7e-10 Score=90.65 Aligned_cols=225 Identities=12% Similarity=0.080 Sum_probs=144.4
Q ss_pred CCCCeeEEEEe--CCEEEEEeCCCeEEEEeecCCCccccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEe
Q 047325 81 SSGLVKAIVIS--GEKIFTGHQDGKIRVWKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVS 158 (368)
Q Consensus 81 ~~~~v~~~~~~--~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 158 (368)
....+.+++++ +...++...++.|.+||.. ++... .... .....+.
T Consensus 18 ~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~-~~~~~-~~~~------------------------------~~~~~~~ 65 (300)
T 2qc5_A 18 PDSGPYGITSSEDGKVWFTQHKANKISSLDQS-GRIKE-FEVP------------------------------TPDAKVM 65 (300)
T ss_dssp TTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEE-EECS------------------------------STTCCEE
T ss_pred CCCCcceeeECCCCCEEEEcCCCCeEEEECCC-CceEE-EECC------------------------------CCCCcce
Confidence 34567888887 5555555568999999876 43211 0000 1335688
Q ss_pred EEEEcCCCCEEEEEeCCCcEEEEEccCCeEEE-EeecCCCceEEEEeCCCC-eEEEEcCCCeEEEEEcCCCCCCcccccc
Q 047325 159 CMSLDQDCGLLYTASWDRTFKVWRISDSKCLE-SVSAHDDAVNSVVSSSEG-LIFTGSADGTVKVWKREQHGKGTKHSLA 236 (368)
Q Consensus 159 ~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~-~~~~~~~~v~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~ 236 (368)
++++.+++.++++...++.|..+|.. ++... .+......+.++++.+++ .+++...++.|..+|.. +.. ..
T Consensus 66 ~i~~~~~g~l~v~~~~~~~v~~~d~~-g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~-----~~ 138 (300)
T 2qc5_A 66 CLIVSSLGDIWFTENGANKIGKLSKK-GGFTEYPLPQPDSGPYGITEGLNGDIWFTQLNGDRIGKLTAD-GTI-----YE 138 (300)
T ss_dssp EEEECTTSCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTT-SCE-----EE
T ss_pred eEEECCCCCEEEEecCCCeEEEECCC-CCeEEecCCCCCCCCccceECCCCCEEEEccCCCeEEEECCC-CCE-----EE
Confidence 99999999877776667889999987 55432 222234678899999988 55555557899999886 211 11
Q ss_pred eeeccccccEEEEEEcCCCCEEEEecCCCcEEEEeCCCccccceeeeccceEE--EEEEeCCCEEEEeeCCCeEEEEecC
Q 047325 237 QTLLKQECAVTALVVSSSRSIVYCGSSDGLVNFWEREKQLSHGGVLKGHKLAV--LCLAAAGKLVFSGSADKTICVWRRD 314 (368)
Q Consensus 237 ~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~~~dg~i~iw~~~ 314 (368)
.........+..+++.+++++.++...++.|..+|.. +.........+.... +++.+++.+.++....+.|.+|+..
T Consensus 139 ~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~~ 217 (300)
T 2qc5_A 139 YDLPNKGSYPAFITLGSDNALWFTENQNNSIGRITNT-GKLEEYPLPTNAAAPVGITSGNDGALWFVEIMGNKIGRITTT 217 (300)
T ss_dssp EECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECTT-CCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECTT
T ss_pred ccCCCCCCCceeEEECCCCCEEEEecCCCeEEEECCC-CcEEEeeCCCCCCCcceEEECCCCCEEEEccCCCEEEEEcCC
Confidence 1122234568899999999977777667889999984 332211111222223 4455667777776677889999873
Q ss_pred CCceeeeEeeeccccCeeEEEEecCCeeeecCC
Q 047325 315 GAIHTCLSVLTGHTGPVKCLAVEEDRDSSSSTS 347 (368)
Q Consensus 315 ~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~ 347 (368)
.. ........+...+.+++++++|.+.++..
T Consensus 218 g~--~~~~~~~~~~~~~~~i~~d~~g~l~v~~~ 248 (300)
T 2qc5_A 218 GE--ISEYDIPTPNARPHAITAGKNSEIWFTEW 248 (300)
T ss_dssp CC--EEEEECSSTTCCEEEEEECSTTCEEEEET
T ss_pred Cc--EEEEECCCCCCCceEEEECCCCCEEEecc
Confidence 22 11222333456789999999998655543
No 210
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=99.42 E-value=3e-11 Score=111.92 Aligned_cols=200 Identities=15% Similarity=0.045 Sum_probs=123.5
Q ss_pred cCCCEeEEEEcCCCCEEEEEeCC-----CcEEEEEccCCeEEEEeecCCCceEEEEeCCCCeEEEEcCCC----------
Q 047325 153 HSDAVSCMSLDQDCGLLYTASWD-----RTFKVWRISDSKCLESVSAHDDAVNSVVSSSEGLIFTGSADG---------- 217 (368)
Q Consensus 153 ~~~~v~~~~~~~~~~~l~~~~~d-----~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~dg---------- 217 (368)
|...+..++|+|||++|+.+..+ ..|++||+.+++.+... .+...+..++|+||..|+.+..++
T Consensus 161 ~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~tg~~~~~~-~~~~~~~~~~wspD~~l~~~~~~~~~~~~~~~~~ 239 (741)
T 1yr2_A 161 GATALDAWAASDDGRLLAYSVQDGGSDWRTVKFVGVADGKPLADE-LKWVKFSGLAWLGNDALLYSRFAEPKEGQAFQAL 239 (741)
T ss_dssp --EEEEEEEECTTSSEEEEEEEETTCSEEEEEEEETTTCCEEEEE-EEEEESCCCEESTTSEEEEEECCCC--------C
T ss_pred CCEEEEeEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCCcc-CCCceeccEEEECCCEEEEEEecCcccccccccC
Confidence 33467889999999998877654 36999999999876532 122223578899987555555544
Q ss_pred ----eEEEEEcCCCCCCcccccceeeccccccEEEEEEcCCCCEEEEecCCC-----cEEEEeCCCccc--cceeeeccc
Q 047325 218 ----TVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSSSRSIVYCGSSDG-----LVNFWEREKQLS--HGGVLKGHK 286 (368)
Q Consensus 218 ----~i~i~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg-----~i~i~d~~~~~~--~~~~~~~~~ 286 (368)
.|++|++.+... ....+.....+...+..+.|+|||++|+..+.++ .|++||+.++.. .........
T Consensus 240 ~~~~~v~~~~lgt~~~--~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~ 317 (741)
T 1yr2_A 240 NYNQTVWLHRLGTPQS--ADQPVFATPELPKRGHGASVSSDGRWVVITSSEGTDPVNTVHVARVTNGKIGPVTALIPDLK 317 (741)
T ss_dssp CCCCEEEEEETTSCGG--GCEEEECCTTCTTCEEEEEECTTSCEEEEEEECTTCSCCEEEEEEEETTEECCCEEEECSSS
T ss_pred CCCCEEEEEECCCCch--hCEEEeccCCCCeEEEEEEECCCCCEEEEEEEccCCCcceEEEEECCCCCCcccEEecCCCC
Confidence 388999865421 0112222222334588999999999888877543 899999876521 222222222
Q ss_pred eEEEEEEeCCCEEEEeeC----CCeEEEEecCCCceeeeEeeeccccCeeEEEEecCCeeeecC--CcceEEEEEe
Q 047325 287 LAVLCLAAAGKLVFSGSA----DKTICVWRRDGAIHTCLSVLTGHTGPVKCLAVEEDRDSSSST--SSCAQRWIVY 356 (368)
Q Consensus 287 ~~~~~~~~~~~~l~~~~~----dg~i~iw~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~--~~~~~~w~l~ 356 (368)
.....+.++++.|+..+. ++.|.+||+++........+..+...+.+++++ ++.++++. ++..++|.+-
T Consensus 318 ~~~~~~~~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~ 392 (741)
T 1yr2_A 318 AQWDFVDGVGDQLWFVSGDGAPLKKIVRVDLSGSTPRFDTVVPESKDNLESVGIA-GNRLFASYIHDAKSQVLAFD 392 (741)
T ss_dssp SCEEEEEEETTEEEEEECTTCTTCEEEEEECSSSSCEEEEEECCCSSEEEEEEEE-BTEEEEEEEETTEEEEEEEE
T ss_pred ceEEEEeccCCEEEEEECCCCCCCEEEEEeCCCCccccEEEecCCCCeEEEEEEE-CCEEEEEEEECCEEEEEEEe
Confidence 333445688988887765 455999998763212222334455567788887 44544443 3455666553
No 211
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=99.40 E-value=1.8e-09 Score=89.61 Aligned_cols=224 Identities=9% Similarity=-0.034 Sum_probs=132.4
Q ss_pred EEEEEecCC---EEEEccCCCcEEEEcCCcceecccCCCCCeeEEEEe-CCEEEEEeCCCeEEEEeecCCCccccccCCc
Q 047325 47 IYSLAASKD---LLYTGSDSKNIRVWKNLKEFCGFKASSGLVKAIVIS-GEKIFTGHQDGKIRVWKISPKNQSVHKRAGT 122 (368)
Q Consensus 47 i~~~~~~~~---~l~s~~~dg~i~iw~~~~~~~~~~~~~~~v~~~~~~-~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~ 122 (368)
..+..|+++ ++++...++.|..||..............+.++.++ ...++.++.+ .|.+||..+++.........
T Consensus 51 ~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~~~~~~~~~v~~i~~~~dg~l~v~~~~-gl~~~d~~~g~~~~~~~~~~ 129 (326)
T 2ghs_A 51 GEGPTFDPASGTAWWFNILERELHELHLASGRKTVHALPFMGSALAKISDSKQLIASDD-GLFLRDTATGVLTLHAELES 129 (326)
T ss_dssp EEEEEEETTTTEEEEEEGGGTEEEEEETTTTEEEEEECSSCEEEEEEEETTEEEEEETT-EEEEEETTTCCEEEEECSST
T ss_pred CcCCeEeCCCCEEEEEECCCCEEEEEECCCCcEEEEECCCcceEEEEeCCCeEEEEECC-CEEEEECCCCcEEEEeeCCC
Confidence 346677653 677777789999999875432222234678899887 4444555554 48889987665321111000
Q ss_pred cccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcCCCCEEEEEeC------CCcEEEEEccCCeEEEEeecCC
Q 047325 123 LPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCGLLYTASW------DRTFKVWRISDSKCLESVSAHD 196 (368)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~------d~~i~iwd~~~~~~~~~~~~~~ 196 (368)
. .....+.++.++|+++++++... .+.|..+| +++... +....
T Consensus 130 ~----------------------------~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~--~g~~~~-~~~~~ 178 (326)
T 2ghs_A 130 D----------------------------LPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA--KGKVTK-LFADI 178 (326)
T ss_dssp T----------------------------CTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE--TTEEEE-EEEEE
T ss_pred C----------------------------CCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEe--CCcEEE-eeCCC
Confidence 0 01235788999999987665432 24555555 555433 32233
Q ss_pred CceEEEEeCCCC-eE-EEEcCCCeEEEEEcC--CCCCCcccccceeeccccccEEEEEEcCCCCEEEEecCCCcEEEEeC
Q 047325 197 DAVNSVVSSSEG-LI-FTGSADGTVKVWKRE--QHGKGTKHSLAQTLLKQECAVTALVVSSSRSIVYCGSSDGLVNFWER 272 (368)
Q Consensus 197 ~~v~~~~~~~~~-~l-~~~~~dg~i~i~d~~--~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~ 272 (368)
.....++|+|++ .+ ++...++.|.+||+. .+-..........+......+..+++++++++.++...++.|..||.
T Consensus 179 ~~~~~i~~s~dg~~lyv~~~~~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G~lwva~~~~~~v~~~d~ 258 (326)
T 2ghs_A 179 SIPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDT 258 (326)
T ss_dssp SSEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEECT
T ss_pred cccCCeEEcCCCCEEEEEECCCCEEEEEEcccccCCcccCceEEEECCCCCCCCCeeEECCCCCEEEEEeCCCEEEEECC
Confidence 456789999999 44 455667899999986 22011111111222223455788999999987777766788999998
Q ss_pred CCccccceeeeccceEE--EEEE-eCCCEEEEeeC
Q 047325 273 EKQLSHGGVLKGHKLAV--LCLA-AAGKLVFSGSA 304 (368)
Q Consensus 273 ~~~~~~~~~~~~~~~~~--~~~~-~~~~~l~~~~~ 304 (368)
. ++.. ..+..+...+ .++. ++++.|++++.
T Consensus 259 ~-g~~~-~~i~~~~~~~~~~af~g~d~~~L~vt~~ 291 (326)
T 2ghs_A 259 D-GNHI-ARYEVPGKQTTCPAFIGPDASRLLVTSA 291 (326)
T ss_dssp T-CCEE-EEEECSCSBEEEEEEESTTSCEEEEEEB
T ss_pred C-CCEE-EEEECCCCCcEEEEEecCCCCEEEEEec
Confidence 4 3332 2333333233 4455 56666655443
No 212
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=99.38 E-value=3.6e-10 Score=93.03 Aligned_cols=213 Identities=12% Similarity=0.154 Sum_probs=129.7
Q ss_pred CCCCeeEEEEe--CC-EEEEEeCCCeEEEEeecCCCccccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCE
Q 047325 81 SSGLVKAIVIS--GE-KIFTGHQDGKIRVWKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAV 157 (368)
Q Consensus 81 ~~~~v~~~~~~--~~-~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 157 (368)
.........|+ ++ .+++...++.|..|+.. ++.. .+..+...+
T Consensus 43 ~~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~~-g~~~---------------------------------~~~~~~~~~ 88 (305)
T 3dr2_A 43 QATWSEGPAWWEAQRTLVWSDLVGRRVLGWRED-GTVD---------------------------------VLLDATAFT 88 (305)
T ss_dssp CCSSEEEEEEEGGGTEEEEEETTTTEEEEEETT-SCEE---------------------------------EEEESCSCE
T ss_pred CCcCccCCeEeCCCCEEEEEECCCCEEEEEeCC-CCEE---------------------------------EEeCCCCcc
Confidence 33445567776 55 56677778899999863 3211 111245668
Q ss_pred eEEEEcCCCCEEEEEeCCCcEEEEEccCCeEEEEeecC----CCceEEEEeCCCCeEEE-----EcC-------------
Q 047325 158 SCMSLDQDCGLLYTASWDRTFKVWRISDSKCLESVSAH----DDAVNSVVSSSEGLIFT-----GSA------------- 215 (368)
Q Consensus 158 ~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~----~~~v~~~~~~~~~~l~~-----~~~------------- 215 (368)
..++++++++++++...++.|..||.. ++........ ...+..+++.++|.+.. |..
T Consensus 89 ~gl~~d~dG~l~v~~~~~~~v~~~~~~-g~~~~~~~~~~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~ 167 (305)
T 3dr2_A 89 NGNAVDAQQRLVHCEHGRRAITRSDAD-GQAHLLVGRYAGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELA 167 (305)
T ss_dssp EEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEECEETTEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSS
T ss_pred ceeeECCCCCEEEEECCCCEEEEECCC-CCEEEEEeccCCCccCCCCCEEECCCCCEEEeCcCCCccccccccccccccC
Confidence 899999999866665556789999985 5533222111 13467899999994444 332
Q ss_pred CCeEEEEEcCCCCCCcccccceeeccccccEEEEEEcCCCCEEEEecCC------CcEEEEeCCCccccc-eeee-ccc-
Q 047325 216 DGTVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSSSRSIVYCGSSD------GLVNFWEREKQLSHG-GVLK-GHK- 286 (368)
Q Consensus 216 dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d------g~i~i~d~~~~~~~~-~~~~-~~~- 286 (368)
.+.|..+|...+.. .... .......++|+|+++.|+.+... +.|.+|++....... ..+. ...
T Consensus 168 ~~~v~~~d~~~g~~-------~~~~-~~~~p~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~~~~ 239 (305)
T 3dr2_A 168 HHSVYRLPPDGSPL-------QRMA-DLDHPNGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGALHDRRHFASVPDG 239 (305)
T ss_dssp CEEEEEECSSSCCC-------EEEE-EESSEEEEEECTTSSEEEEEECCC---CCCEEEEEEEETTEEEEEEEEECCSSS
T ss_pred CCeEEEEcCCCCcE-------EEEe-cCCCCcceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCCccCCeEEEECCCC
Confidence 25677777654321 1111 33456789999999988777665 689999986532100 0110 000
Q ss_pred -eEEEEEEeCCCEEEEeeCCCeEEEEecCCCceeeeEeeeccccCeeEEEEecCCee
Q 047325 287 -LAVLCLAAAGKLVFSGSADKTICVWRRDGAIHTCLSVLTGHTGPVKCLAVEEDRDS 342 (368)
Q Consensus 287 -~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~ 342 (368)
..-++++++|++ .++..+ .|.+|+.+. +.+..+..+. .+.+++|++++..
T Consensus 240 ~pdgi~~d~~G~l-wv~~~~-gv~~~~~~g---~~~~~~~~~~-~~~~~~f~~d~~~ 290 (305)
T 3dr2_A 240 LPDGFCVDRGGWL-WSSSGT-GVCVFDSDG---QLLGHIPTPG-TASNCTFDQAQQR 290 (305)
T ss_dssp CCCSEEECTTSCE-EECCSS-EEEEECTTS---CEEEEEECSS-CCCEEEECTTSCE
T ss_pred CCCeEEECCCCCE-EEecCC-cEEEECCCC---CEEEEEECCC-ceeEEEEeCCCCE
Confidence 112456677884 444445 499998743 3445554444 5899999998873
No 213
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=99.38 E-value=7.7e-10 Score=91.87 Aligned_cols=209 Identities=12% Similarity=0.095 Sum_probs=130.5
Q ss_pred eEEEEe---CCEEEEEeCCCeEEEEeecCCCccccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEE
Q 047325 86 KAIVIS---GEKIFTGHQDGKIRVWKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSL 162 (368)
Q Consensus 86 ~~~~~~---~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 162 (368)
.+..|+ +..+++...++.|..||..+++.... .....+.++.+
T Consensus 52 egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~~~~----------------------------------~~~~~v~~i~~ 97 (326)
T 2ghs_A 52 EGPTFDPASGTAWWFNILERELHELHLASGRKTVH----------------------------------ALPFMGSALAK 97 (326)
T ss_dssp EEEEEETTTTEEEEEEGGGTEEEEEETTTTEEEEE----------------------------------ECSSCEEEEEE
T ss_pred cCCeEeCCCCEEEEEECCCCEEEEEECCCCcEEEE----------------------------------ECCCcceEEEE
Confidence 455666 23556666788999999876542110 03356889999
Q ss_pred cCCCCEEEEEeCCCcEEEEEccCCeEEEEeec----CCCceEEEEeCCCCeEEEEcC-------CCeEEEEEcCCCCCCc
Q 047325 163 DQDCGLLYTASWDRTFKVWRISDSKCLESVSA----HDDAVNSVVSSSEGLIFTGSA-------DGTVKVWKREQHGKGT 231 (368)
Q Consensus 163 ~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~----~~~~v~~~~~~~~~~l~~~~~-------dg~i~i~d~~~~~~~~ 231 (368)
+++++++++. .+ .|.+||..+++....... ....+.+++++|+|.++.++. .+.|..++ .+ .
T Consensus 98 ~~dg~l~v~~-~~-gl~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~--~g-~-- 170 (326)
T 2ghs_A 98 ISDSKQLIAS-DD-GLFLRDTATGVLTLHAELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA--KG-K-- 170 (326)
T ss_dssp EETTEEEEEE-TT-EEEEEETTTCCEEEEECSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE--TT-E--
T ss_pred eCCCeEEEEE-CC-CEEEEECCCCcEEEEeeCCCCCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEe--CC-c--
Confidence 9998876654 44 499999988775433221 123588999999994444432 24555555 22 1
Q ss_pred ccccceeeccccccEEEEEEcCCCCEEEEe-cCCCcEEEEeCC--Cc-ccc-ceee---eccceE--EEEEEeCCCEEEE
Q 047325 232 KHSLAQTLLKQECAVTALVVSSSRSIVYCG-SSDGLVNFWERE--KQ-LSH-GGVL---KGHKLA--VLCLAAAGKLVFS 301 (368)
Q Consensus 232 ~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~~dg~i~i~d~~--~~-~~~-~~~~---~~~~~~--~~~~~~~~~~l~~ 301 (368)
...+.........++|+|+++.++.+ +.++.|.+||+. ++ ... ...+ ...... -++++.+|.+.++
T Consensus 171 ----~~~~~~~~~~~~~i~~s~dg~~lyv~~~~~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G~lwva 246 (326)
T 2ghs_A 171 ----VTKLFADISIPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNA 246 (326)
T ss_dssp ----EEEEEEEESSEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEE
T ss_pred ----EEEeeCCCcccCCeEEcCCCCEEEEEECCCCEEEEEEcccccCCcccCceEEEECCCCCCCCCeeEECCCCCEEEE
Confidence 11122223456789999999876544 567899999985 44 211 0111 111122 2445567887777
Q ss_pred eeCCCeEEEEecCCCceeeeEeeeccccCeeEEEEe-cCCee
Q 047325 302 GSADKTICVWRRDGAIHTCLSVLTGHTGPVKCLAVE-EDRDS 342 (368)
Q Consensus 302 ~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~l~~~-~~~~~ 342 (368)
...++.|.+|+.+. +.+..+..+...+++++|+ +++..
T Consensus 247 ~~~~~~v~~~d~~g---~~~~~i~~~~~~~~~~af~g~d~~~ 285 (326)
T 2ghs_A 247 RWGEGAVDRYDTDG---NHIARYEVPGKQTTCPAFIGPDASR 285 (326)
T ss_dssp EETTTEEEEECTTC---CEEEEEECSCSBEEEEEEESTTSCE
T ss_pred EeCCCEEEEECCCC---CEEEEEECCCCCcEEEEEecCCCCE
Confidence 76778999998743 4455666666679999998 88764
No 214
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=99.37 E-value=7e-11 Score=98.42 Aligned_cols=256 Identities=13% Similarity=0.103 Sum_probs=149.9
Q ss_pred CceeeeccCcCCcEEEEEec-CCEEEEccCCCcEEEEcCCcc-eecccCCCCCeeEEEEeCCEEEEEeCCCeEEEEeecC
Q 047325 34 NGLIGSLVREEGHIYSLAAS-KDLLYTGSDSKNIRVWKNLKE-FCGFKASSGLVKAIVISGEKIFTGHQDGKIRVWKISP 111 (368)
Q Consensus 34 ~~~~~~~~~h~~~i~~~~~~-~~~l~s~~~dg~i~iw~~~~~-~~~~~~~~~~v~~~~~~~~~l~s~~~dg~i~vw~~~~ 111 (368)
++.+.....+...+.++..+ ...|+.++.+ |..+|.... ...+.............++.++.++.++.|..+|..
T Consensus 49 g~~~~~~~~~~~~~~~~~~~~~g~l~v~t~~--l~~~d~~g~~~~~~~~~~~~~~~~~~~~~~l~v~t~~~~l~~~d~~- 125 (330)
T 3hxj_A 49 GSVKWFFKSGEIIECRPSIGKDGTIYFGSDK--VYAINPDGTEKWRFDTKKAIVSDFTIFEDILYVTSMDGHLYAINTD- 125 (330)
T ss_dssp SCEEESSCGGGEEEECCEETTTTEECCSSCE--EEEECCCGGGGGGSCC-----CCEEEETTEEEEECTTSEEEEECTT-
T ss_pred CcEEEEEecCCCcccceEEecCCcEEEecCc--EEEECCCCcEEEEEECCCCcccCceEECCEEEEEecCCEEEEEcCC-
Confidence 33333333333445666665 3366666665 777775322 222332333333344447788888888888888877
Q ss_pred CCccccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcCCCCEEEEEeCCCcEEEEEccCCeEEEE
Q 047325 112 KNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCGLLYTASWDRTFKVWRISDSKCLES 191 (368)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~ 191 (368)
++....... ....+.++...+++. ++.++.++.|..+|.. ++.+..
T Consensus 126 g~~~~~~~~--------------------------------~~~~~~~~~~~~~g~-l~vgt~~~~l~~~d~~-g~~~~~ 171 (330)
T 3hxj_A 126 GTEKWRFKT--------------------------------KKAIYATPIVSEDGT-IYVGSNDNYLYAINPD-GTEKWR 171 (330)
T ss_dssp SCEEEEEEC--------------------------------SSCCCSCCEECTTSC-EEEECTTSEEEEECTT-SCEEEE
T ss_pred CCEEEEEcC--------------------------------CCceeeeeEEcCCCE-EEEEcCCCEEEEECCC-CCEeEE
Confidence 443222111 222344556666665 6667778999999998 887777
Q ss_pred eecCCCceEEEEeCCCCeEEEEcCCCeEEEEEcCCCCCCcccccceeeccccccEEEEEEcCCCCEEEEecCCCcEEEEe
Q 047325 192 VSAHDDAVNSVVSSSEGLIFTGSADGTVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSSSRSIVYCGSSDGLVNFWE 271 (368)
Q Consensus 192 ~~~~~~~v~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d 271 (368)
+......+.++...+++.+..++ +.|..+| ..+. ...........+.++...+++. |..++.++.+..+|
T Consensus 172 ~~~~~~~~~~~~~d~~g~l~v~t--~~l~~~d-~~g~------~~~~~~~~~~~~~~~~~~~~g~-l~v~t~~~gl~~~~ 241 (330)
T 3hxj_A 172 FKTNDAITSAASIGKDGTIYFGS--DKVYAIN-PDGT------EKWNFYAGYWTVTRPAISEDGT-IYVTSLDGHLYAIN 241 (330)
T ss_dssp EECSSCCCSCCEECTTCCEEEES--SSEEEEC-TTSC------EEEEECCSSCCCSCCEECTTSC-EEEEETTTEEEEEC
T ss_pred EecCCCceeeeEEcCCCEEEEEe--CEEEEEC-CCCc------EEEEEccCCcceeceEECCCCe-EEEEcCCCeEEEEC
Confidence 76666667777787788777777 8899999 4332 1222223334567777887765 55566677888887
Q ss_pred CCCccccceeeeccceEEEEEEeC-CCEEEEeeCCCeEEEEecCCCceeeeEeeeccccCeeEEEEecCCe
Q 047325 272 REKQLSHGGVLKGHKLAVLCLAAA-GKLVFSGSADKTICVWRRDGAIHTCLSVLTGHTGPVKCLAVEEDRD 341 (368)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~ 341 (368)
... ..... ..........+..+ +..|..++.+|.|..+|. .+ +.+..+......+.++...+++.
T Consensus 242 ~~g-~~~~~-~~~~~~~~~~~~~~~~g~l~v~t~~ggl~~~d~-~g--~~~~~~~~~~~~~~~~~~d~~g~ 307 (330)
T 3hxj_A 242 PDG-TEKWR-FKTGKRIESSPVIGNTDTIYFGSYDGHLYAINP-DG--TEKWNFETGSWIIATPVIDENGT 307 (330)
T ss_dssp TTS-CEEEE-EECSSCCCSCCEECTTSCEEEECTTCEEEEECT-TS--CEEEEEECSSCCCSCCEECTTCC
T ss_pred CCC-CEeEE-eeCCCCccccceEcCCCeEEEecCCCCEEEECC-CC--cEEEEEEcCCccccceEEcCCCE
Confidence 543 33222 22111111122223 556777888989999985 33 44444444455677777777776
No 215
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=99.37 E-value=1.4e-10 Score=95.38 Aligned_cols=237 Identities=8% Similarity=0.047 Sum_probs=144.4
Q ss_pred eeeeccCcCCcEEEEEecC--C-EEEEccCCCcEEEEcCCcceecccCCCCCeeEEEEe--CCEEEEEeCCCeEEEEeec
Q 047325 36 LIGSLVREEGHIYSLAASK--D-LLYTGSDSKNIRVWKNLKEFCGFKASSGLVKAIVIS--GEKIFTGHQDGKIRVWKIS 110 (368)
Q Consensus 36 ~~~~~~~h~~~i~~~~~~~--~-~l~s~~~dg~i~iw~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~vw~~~ 110 (368)
.+..+..+........|++ + +++++..++.|..|+.......+..+...+..++++ |+.+++...++.|.+|+.+
T Consensus 36 ~~~~l~~~~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~~g~~~~~~~~~~~~~gl~~d~dG~l~v~~~~~~~v~~~~~~ 115 (305)
T 3dr2_A 36 RLLTLYDQATWSEGPAWWEAQRTLVWSDLVGRRVLGWREDGTVDVLLDATAFTNGNAVDAQQRLVHCEHGRRAITRSDAD 115 (305)
T ss_dssp CCEEEECCCSSEEEEEEEGGGTEEEEEETTTTEEEEEETTSCEEEEEESCSCEEEEEECTTSCEEEEETTTTEEEEECTT
T ss_pred ceEEEecCCcCccCCeEeCCCCEEEEEECCCCEEEEEeCCCCEEEEeCCCCccceeeECCCCCEEEEECCCCEEEEECCC
Confidence 3444555555667777764 4 778888899999999866566666677788999998 5544444455789999875
Q ss_pred CCCccccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcCCCCEEEE----EeC------------
Q 047325 111 PKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCGLLYT----ASW------------ 174 (368)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~----~~~------------ 174 (368)
++........ .......+.++++.++|++.++ |..
T Consensus 116 -g~~~~~~~~~----------------------------~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~ 166 (305)
T 3dr2_A 116 -GQAHLLVGRY----------------------------AGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPEL 166 (305)
T ss_dssp -SCEEEEECEE----------------------------TTEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSS
T ss_pred -CCEEEEEecc----------------------------CCCccCCCCCEEECCCCCEEEeCcCCCcccccccccccccc
Confidence 3311100000 0002245678999999987776 321
Q ss_pred -CCcEEEEEccCCeEEEEeecCCCceEEEEeCCCC-eEEEEcCC------CeEEEEEcCCCCCCcccccceeeccccccE
Q 047325 175 -DRTFKVWRISDSKCLESVSAHDDAVNSVVSSSEG-LIFTGSAD------GTVKVWKREQHGKGTKHSLAQTLLKQECAV 246 (368)
Q Consensus 175 -d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~d------g~i~i~d~~~~~~~~~~~~~~~~~~~~~~i 246 (368)
.+.|..+|..+++..... .......++|+|++ .|+.+... +.|..|++..... ...... ........
T Consensus 167 ~~~~v~~~d~~~g~~~~~~--~~~~p~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~l-~~~~~~--~~~~~~~p 241 (305)
T 3dr2_A 167 AHHSVYRLPPDGSPLQRMA--DLDHPNGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGAL-HDRRHF--ASVPDGLP 241 (305)
T ss_dssp SCEEEEEECSSSCCCEEEE--EESSEEEEEECTTSSEEEEEECCC---CCCEEEEEEEETTEE-EEEEEE--ECCSSSCC
T ss_pred CCCeEEEEcCCCCcEEEEe--cCCCCcceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCCc-cCCeEE--EECCCCCC
Confidence 256888887666654433 33456789999999 56666554 7899999864320 000010 11122334
Q ss_pred EEEEEcCCCCEEEEecCCCcEEEEeCCCccccceeeeccceEEEEEEeCCCEEEEeeCCCeEE
Q 047325 247 TALVVSSSRSIVYCGSSDGLVNFWEREKQLSHGGVLKGHKLAVLCLAAAGKLVFSGSADKTIC 309 (368)
Q Consensus 247 ~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~ 309 (368)
..++++++|++ .++..+| |.+|+.... ............-+++.++++.|+.++.++..+
T Consensus 242 dgi~~d~~G~l-wv~~~~g-v~~~~~~g~-~~~~~~~~~~~~~~~f~~d~~~L~it~~~~l~~ 301 (305)
T 3dr2_A 242 DGFCVDRGGWL-WSSSGTG-VCVFDSDGQ-LLGHIPTPGTASNCTFDQAQQRLFITGGPCLWM 301 (305)
T ss_dssp CSEEECTTSCE-EECCSSE-EEEECTTSC-EEEEEECSSCCCEEEECTTSCEEEEEETTEEEE
T ss_pred CeEEECCCCCE-EEecCCc-EEEECCCCC-EEEEEECCCceeEEEEeCCCCEEEEEcCCeEEE
Confidence 56889999984 4444544 999998543 322222222233355667888888877765333
No 216
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=99.36 E-value=2e-10 Score=95.87 Aligned_cols=243 Identities=10% Similarity=0.037 Sum_probs=147.3
Q ss_pred CCcEEEEcCCcc--eecccCCCCCeeEEEEe--CCEEEEEe----------CCCeEEEEeecCCCccccccCCcccccee
Q 047325 63 SKNIRVWKNLKE--FCGFKASSGLVKAIVIS--GEKIFTGH----------QDGKIRVWKISPKNQSVHKRAGTLPTLKD 128 (368)
Q Consensus 63 dg~i~iw~~~~~--~~~~~~~~~~v~~~~~~--~~~l~s~~----------~dg~i~vw~~~~~~~~~~~~~~~~~~~~~ 128 (368)
++.|.+.|..+. +..+..-..+ .+.++ +++++++. .++.|.+||..+.+.........-...
T Consensus 58 ~~~V~ViD~~t~~v~~~I~vG~~P--~va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~~t~~v~~~I~v~~g~r~-- 133 (386)
T 3sjl_D 58 VTQQFVIDGEAGRVIGMIDGGFLP--NPVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRF-- 133 (386)
T ss_dssp SEEEEEEETTTTEEEEEEEECSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCC--
T ss_pred CCEEEEEECCCCeEEEEEECCCCC--cEEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCeEEEEEECCCcccc--
Confidence 679999998643 3333333333 37776 77777665 367899999998775443321100000
Q ss_pred eeeccCCCCceeEecccceeeeeecCCCEeEEEEcCCCCEEEEEeC--CCcEEEEEccCCeEEEEeecCCCceEEEEeCC
Q 047325 129 IFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCGLLYTASW--DRTFKVWRISDSKCLESVSAHDDAVNSVVSSS 206 (368)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~--d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~ 206 (368)
........+.++|||++++++.. ++.|.++|+.+++.+.++..... ...+ |
T Consensus 134 -----------------------~~g~~P~~~a~spDGk~lyVan~~~~~~VsVID~~t~~vv~tI~v~g~---~~~~-P 186 (386)
T 3sjl_D 134 -----------------------LVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDC---YHIF-P 186 (386)
T ss_dssp -----------------------CBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSE---EEEE-E
T ss_pred -----------------------ccCCCCceEEEcCCCCEEEEEEcCCCCeEEEEECCCCcEEEEEECCCc---ceee-c
Confidence 01123456899999999998874 68999999999999998864321 1222 4
Q ss_pred CC--eEEEEcCCCeEEEEEcCCCCCCcccccceeeccccccEE-EEEEc-CCCCEEEEecCCCcEEEEeCCCccc-ccee
Q 047325 207 EG--LIFTGSADGTVKVWKREQHGKGTKHSLAQTLLKQECAVT-ALVVS-SSRSIVYCGSSDGLVNFWEREKQLS-HGGV 281 (368)
Q Consensus 207 ~~--~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~i~-~~~~~-~~~~~l~~~~~dg~i~i~d~~~~~~-~~~~ 281 (368)
.+ .+++.+.||++.+.++...++... .....+.....++. ...|. ++|++++ .+.+|.|++.|+.+... ....
T Consensus 187 ~g~~~~~~~~~DG~~~~v~~~~~g~v~~-~~~~~~~~~~~~~~~~~~~~~~dG~~~~-vs~~g~V~v~d~~~~~~~v~~~ 264 (386)
T 3sjl_D 187 TAPDTFFMHCRDGSLAKVAFGTEGTPEI-THTEVFHPEDEFLINHPAYSQKAGRLVW-PTYTGKIHQIDLSSGDAKFLPA 264 (386)
T ss_dssp EETTEEEEEETTSCEEEEECCSSSCCEE-EECCCCSCTTSCBCSCCEEETTTTEEEE-EBTTSEEEEEECTTSSCEECCC
T ss_pred CCCceeEEECCCCCEEEEECCCCCeEEE-eecceeccccccccccceeEcCCCcEEE-EeCCCEEEEEECCCCcceeecc
Confidence 33 667888899999999875332110 00011111111221 13453 5776555 45579999999875431 1111
Q ss_pred e------------eccceEEEEEEeCCCEEEEeeC----------CCeEEEEecCCCceeeeEeeeccccCeeEEEEecC
Q 047325 282 L------------KGHKLAVLCLAAAGKLVFSGSA----------DKTICVWRRDGAIHTCLSVLTGHTGPVKCLAVEED 339 (368)
Q Consensus 282 ~------------~~~~~~~~~~~~~~~~l~~~~~----------dg~i~iw~~~~~~~~~~~~~~~h~~~v~~l~~~~~ 339 (368)
. .........++++++.++.... .+.|.+.|+.+. +.+..+.. ..++.+|++++|
T Consensus 265 ~~~~~~~~~~~g~~p~g~q~~a~~~~~~~lyV~~~~~~~~~hk~~~~~V~viD~~t~--kv~~~i~v-g~~~~~lavs~D 341 (386)
T 3sjl_D 265 VEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTG--ERLAKFEM-GHEIDSINVSQD 341 (386)
T ss_dssp EESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTC--CEEEEEEE-EEEECEEEECSS
T ss_pred eeccccccccccccCCCcceeeECCCCCeEEEEeccccccccCCCCCEEEEEECCCC--eEEEEEEC-CCCcceEEECCC
Confidence 1 1122234677888888887643 246888877776 55666542 347889999999
Q ss_pred Ce
Q 047325 340 RD 341 (368)
Q Consensus 340 ~~ 341 (368)
++
T Consensus 342 ~~ 343 (386)
T 3sjl_D 342 EK 343 (386)
T ss_dssp SS
T ss_pred CC
Confidence 86
No 217
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=99.35 E-value=7.8e-09 Score=87.21 Aligned_cols=246 Identities=7% Similarity=0.023 Sum_probs=150.1
Q ss_pred CCCceeeeccCcCCcEEEEEecCC--EEEEcc----------CCCcEEEEcCCcc--eecccCC-------CCCeeEEEE
Q 047325 32 PQNGLIGSLVREEGHIYSLAASKD--LLYTGS----------DSKNIRVWKNLKE--FCGFKAS-------SGLVKAIVI 90 (368)
Q Consensus 32 ~~~~~~~~~~~h~~~i~~~~~~~~--~l~s~~----------~dg~i~iw~~~~~--~~~~~~~-------~~~v~~~~~ 90 (368)
...+++.++.....+ .++++++ +++.+. .++.|.+||..+. ....... ...-..+.+
T Consensus 55 ~t~~~~~~i~~g~~p--~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~~~~~i~~~~~~~~~~g~~p~~~~~ 132 (373)
T 2mad_H 55 GSGSILGHVNGGFLP--NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNAN 132 (373)
T ss_pred CCCeEEEEecCCCCC--CeEECCCCCEEEEEeccccccccCCCCCeEEEEECCCCcEEEEEECCCccccccCCCccceEE
Confidence 345556666544444 6666644 666654 3678999998642 2221111 122335666
Q ss_pred e--CCEEEEEeC--CCeEEEEeecCCCcccc-ccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcCC
Q 047325 91 S--GEKIFTGHQ--DGKIRVWKISPKNQSVH-KRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQD 165 (368)
Q Consensus 91 ~--~~~l~s~~~--dg~i~vw~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 165 (368)
+ |++|+++.. ++.|.++| .+++.... ... .. ++.+.|+
T Consensus 133 spDG~~l~v~n~~~~~~v~viD-~t~~~~~~~i~~---------------------------------~~---~~~~~~~ 175 (373)
T 2mad_H 133 TPNNADLLFFQFAAGPAVGLVV-QGGSSDDQLLSS---------------------------------PT---CYHIHPG 175 (373)
T ss_pred CCCCCEEEEEecCCCCeEEEEE-CCCCEEeEEcCC---------------------------------Cc---eEEEEeC
Confidence 5 888988874 57899999 87764322 111 11 2344454
Q ss_pred C-CEEEEEeCCCcEEEEEccCCeEEEEee-----cCCCce-EEEEeCCCC-eEEEEcCCCeEEEEEcCCCCCCcccccce
Q 047325 166 C-GLLYTASWDRTFKVWRISDSKCLESVS-----AHDDAV-NSVVSSSEG-LIFTGSADGTVKVWKREQHGKGTKHSLAQ 237 (368)
Q Consensus 166 ~-~~l~~~~~d~~i~iwd~~~~~~~~~~~-----~~~~~v-~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~ 237 (368)
+ ..+++.+.||.+.++|. +++...... ....++ ....+.+++ .++..+..+.+.+.|+..... ....
T Consensus 176 ~~~~~~~~~~dg~~~~vd~-~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~v~vid~~~~~~----~v~~ 250 (373)
T 2mad_H 176 APSTFYLLCAQGGLAKTDH-AGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRIVWPVYSGKILQADISAAGA----TNKA 250 (373)
T ss_pred CCceEEEEcCCCCEEEEEC-CCcEEEEEeccccccCCcceeecceeEecCCEEEEEcCCceEEEEeccCCcc----eEee
Confidence 4 45666778999999999 877664322 111221 223344444 444444678999999864321 0111
Q ss_pred eec----------cccccEEEEEEcCCCCEEEEecC----------CCcEEEEeCCCccccceeeeccceEEEEEEeCCC
Q 047325 238 TLL----------KQECAVTALVVSSSRSIVYCGSS----------DGLVNFWEREKQLSHGGVLKGHKLAVLCLAAAGK 297 (368)
Q Consensus 238 ~~~----------~~~~~i~~~~~~~~~~~l~~~~~----------dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (368)
.+. ........+.++|+++.++.+.. ++.|.++|..+.+.......++...-+.+++|++
T Consensus 251 ~~~~~~~~~~~~~~~p~g~~~~~~s~d~~~lyV~~~~~~~~~~~~~~~~V~VID~~t~~vv~~i~~g~~p~~i~~s~Dg~ 330 (373)
T 2mad_H 251 PIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQISLGHDVDAISVAQDGG 330 (373)
T ss_pred eeeecCCcccccceecCceEeEEECCCCCEEEEEeccCCcccccCCCCeEEEEECCCCEEEEEEECCCCcCeEEECCCCC
Confidence 110 01233455788999998877653 3579999999887765555555566688999999
Q ss_pred -EEEEee-CCCeEEEEecCCCceeeeEe
Q 047325 298 -LVFSGS-ADKTICVWRRDGAIHTCLSV 323 (368)
Q Consensus 298 -~l~~~~-~dg~i~iw~~~~~~~~~~~~ 323 (368)
+++++. .++.|.++|..+. +.+..
T Consensus 331 ~~l~v~~~~~~~V~ViD~~t~--~vv~~ 356 (373)
T 2mad_H 331 PDLYALSAGTEVLHIYDAGAG--DQDQS 356 (373)
T ss_pred eEEEEEcCCCCeEEEEECCCC--CEEee
Confidence 788877 5899999998876 44554
No 218
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=99.34 E-value=3.2e-10 Score=94.62 Aligned_cols=265 Identities=9% Similarity=0.070 Sum_probs=161.3
Q ss_pred cCCCceeeeccCcCCcEEEEEecCC--EEEEcc----------CCCcEEEEcCCcc--eecccCC-------CCCeeEEE
Q 047325 31 LPQNGLIGSLVREEGHIYSLAASKD--LLYTGS----------DSKNIRVWKNLKE--FCGFKAS-------SGLVKAIV 89 (368)
Q Consensus 31 ~~~~~~~~~~~~h~~~i~~~~~~~~--~l~s~~----------~dg~i~iw~~~~~--~~~~~~~-------~~~v~~~~ 89 (368)
....+.+.++..-..+ . ++++++ +++++. .++.|.+||..+. ...+... ...-..+.
T Consensus 66 ~~t~~v~~~I~vG~~P-~-va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~~t~~v~~~I~v~~g~r~~~g~~P~~~a 143 (386)
T 3sjl_D 66 GEAGRVIGMIDGGFLP-N-PVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTS 143 (386)
T ss_dssp TTTTEEEEEEEECSSC-E-EEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEE
T ss_pred CCCCeEEEEEECCCCC-c-EEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCeEEEEEECCCccccccCCCCceEE
Confidence 4456666666554555 3 666654 555544 3678999998753 2222211 12344566
Q ss_pred Ee--CCEEEEEeC--CCeEEEEeecCCCccccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcCC
Q 047325 90 IS--GEKIFTGHQ--DGKIRVWKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQD 165 (368)
Q Consensus 90 ~~--~~~l~s~~~--dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 165 (368)
++ |++++.+.. ++.|.++|+.+.+........ + . ...+...
T Consensus 144 ~spDGk~lyVan~~~~~~VsVID~~t~~vv~tI~v~---------------------------------g-~-~~~~P~g 188 (386)
T 3sjl_D 144 LTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVP---------------------------------D-C-YHIFPTA 188 (386)
T ss_dssp ECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECC---------------------------------S-E-EEEEEEE
T ss_pred EcCCCCEEEEEEcCCCCeEEEEECCCCcEEEEEECC---------------------------------C-c-ceeecCC
Confidence 66 888888864 689999999988754333211 0 0 1122223
Q ss_pred CCEEEEEeCCCcEEEEEccC-CeEEEEeecC----CCceE-EEEe-CCCCeEEEEcCCCeEEEEEcCCCCCCccccccee
Q 047325 166 CGLLYTASWDRTFKVWRISD-SKCLESVSAH----DDAVN-SVVS-SSEGLIFTGSADGTVKVWKREQHGKGTKHSLAQT 238 (368)
Q Consensus 166 ~~~l~~~~~d~~i~iwd~~~-~~~~~~~~~~----~~~v~-~~~~-~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~ 238 (368)
.+.+++.+.||.+.+.++.+ ++.......+ ..++. ...| .++|.++..+.+|.|++.|...... .....
T Consensus 189 ~~~~~~~~~DG~~~~v~~~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~dG~~~~vs~~g~V~v~d~~~~~~----~v~~~ 264 (386)
T 3sjl_D 189 PDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGRLVWPTYTGKIHQIDLSSGDA----KFLPA 264 (386)
T ss_dssp TTEEEEEETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEETTTTEEEEEBTTSEEEEEECTTSSC----EECCC
T ss_pred CceeEEECCCCCEEEEECCCCCeEEEeecceeccccccccccceeEcCCCcEEEEeCCCEEEEEECCCCcc----eeecc
Confidence 45666777788888888865 5543222111 12221 1234 4677555566789999999875421 01111
Q ss_pred ec----------cccccEEEEEEcCCCCEEEEecC----------CCcEEEEeCCCccccceeeeccceEEEEEEeCCC-
Q 047325 239 LL----------KQECAVTALVVSSSRSIVYCGSS----------DGLVNFWEREKQLSHGGVLKGHKLAVLCLAAAGK- 297 (368)
Q Consensus 239 ~~----------~~~~~i~~~~~~~~~~~l~~~~~----------dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~- 297 (368)
+. -.......++++++++.++.... .+.|.++|+.+.+.......++...-+.+++|++
T Consensus 265 ~~~~~~~~~~~g~~p~g~q~~a~~~~~~~lyV~~~~~~~~~hk~~~~~V~viD~~t~kv~~~i~vg~~~~~lavs~D~~~ 344 (386)
T 3sjl_D 265 VEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMGHEIDSINVSQDEKP 344 (386)
T ss_dssp EESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEEEEECEEEECSSSSC
T ss_pred eeccccccccccccCCCcceeeECCCCCeEEEEeccccccccCCCCCEEEEEECCCCeEEEEEECCCCcceEEECCCCCe
Confidence 10 01223345777899988877643 2579999999988887777777666788999986
Q ss_pred EEEEe-eCCCeEEEEecCCCceeeeEeeeccccCeeEEEEecC
Q 047325 298 LVFSG-SADKTICVWRRDGAIHTCLSVLTGHTGPVKCLAVEED 339 (368)
Q Consensus 298 ~l~~~-~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~l~~~~~ 339 (368)
+|++. ..++.|.++|..+. +.+.++.. .+..+.|.+++|
T Consensus 345 ~ly~tn~~~~~VsViD~~t~--k~~~~i~~-~~~p~~l~~s~d 384 (386)
T 3sjl_D 345 LLYALSTGDKTLYIHDAESG--EELRSVNQ-LGHGPQVITTAD 384 (386)
T ss_dssp EEEEEETTTTEEEEEETTTC--CEEEEECC-CCSSCCEEEECC
T ss_pred EEEEEcCCCCeEEEEECCCC--cEEEEecC-CCCCceeEECCc
Confidence 66665 45899999998876 56666543 233455667666
No 219
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=99.34 E-value=1.2e-09 Score=91.45 Aligned_cols=191 Identities=8% Similarity=-0.002 Sum_probs=118.4
Q ss_pred cCCCEeEEEEcCCCCEEEEEeC-----CCcEEEEEccCCeEEEEeecC------CCceEEEEeCCC-Ce-EEEEc---CC
Q 047325 153 HSDAVSCMSLDQDCGLLYTASW-----DRTFKVWRISDSKCLESVSAH------DDAVNSVVSSSE-GL-IFTGS---AD 216 (368)
Q Consensus 153 ~~~~v~~~~~~~~~~~l~~~~~-----d~~i~iwd~~~~~~~~~~~~~------~~~v~~~~~~~~-~~-l~~~~---~d 216 (368)
+...+..++++++++++++-.. ++.|.+||+.+++.+..+..+ ...+..+++.++ +. +++.. .+
T Consensus 65 ~~~~p~gv~~d~~g~L~v~D~g~~~~~~~~i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~ 144 (343)
T 2qe8_A 65 TFDTVLGIKSDGNGIVWMLDNGNQSKSVPKLVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDK 144 (343)
T ss_dssp CCSCEEEEEECSSSEEEEEECHHHHTSCCEEEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGG
T ss_pred ceeEeeEEEEcCCCcEEEEcCCCCcCCCCeEEEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCC
Confidence 5568899999999875555433 578999999999877766532 234688999875 44 45544 67
Q ss_pred CeEEEEEcCCCCCCccc----c-----cceeecc--------------ccccEEEEEEcCCCCEEEEecCCC-cEEEEeC
Q 047325 217 GTVKVWKREQHGKGTKH----S-----LAQTLLK--------------QECAVTALVVSSSRSIVYCGSSDG-LVNFWER 272 (368)
Q Consensus 217 g~i~i~d~~~~~~~~~~----~-----~~~~~~~--------------~~~~i~~~~~~~~~~~l~~~~~dg-~i~i~d~ 272 (368)
+.|.+||+..+...... . ......+ ....+..++++|+++.|+.+..++ .+..++.
T Consensus 145 ~~i~v~d~~~g~~~r~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~gia~s~dg~~ly~~~~~~~~l~~~~~ 224 (343)
T 2qe8_A 145 AALIRVDLQTGLAARVLQGYPGIAPEDIDLVIDGVPVQIGQPDGTVIRPHLGVNGIVLDAENEWLYLSPMHSTSMYRIKS 224 (343)
T ss_dssp CEEEEEETTTCCEEEECTTCTTTSCCSCCCEETTEECBEECTTSCEECCCCCEEEEEECTTSCEEEEEESSCSEEEEEEH
T ss_pred CeEEEEECCCCCEEEEecCCCcccccccceeECCEEEEeccCCCceeceecccceeEeccCCCEEEEEeCCCCeEEEEEH
Confidence 89999998754210000 0 0000000 012468899999999888887666 5555543
Q ss_pred CC---cc----c-cce-eeeccc--eEEEEEEeCCCEEEEeeCCCeEEEEecCCCceeeeEeeeccccCeeEEEEecCCe
Q 047325 273 EK---QL----S-HGG-VLKGHK--LAVLCLAAAGKLVFSGSADKTICVWRRDGAIHTCLSVLTGHTGPVKCLAVEEDRD 341 (368)
Q Consensus 273 ~~---~~----~-~~~-~~~~~~--~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~ 341 (368)
.. .. . ... ...++. ..-++++++|.++++...++.|.+||...+....+... .+...+++++|.+++.
T Consensus 225 ~~~~~~~~~~~~~~~~~~~~g~~g~pdgia~d~~G~l~va~~~~~~V~~~d~~~G~~~~~~~~-~~~~~p~~va~~~~g~ 303 (343)
T 2qe8_A 225 ADLSNLQLTDAELGSKIERYSEKPICDGISIDKDHNIYVGDLAHSAIGVITSADRAYKLLVTD-EKLSWTDSFNFGSDGY 303 (343)
T ss_dssp HHHTCTTCCHHHHHTTCEEEEECCSCSCEEECTTCCEEEEEGGGTEEEEEETTTTEEEEEEEC-GGGSCEEEEEECTTSC
T ss_pred HHhcCCCCChhhhhcceEecccCCCCceEEECCCCCEEEEccCCCeEEEEECCCCCEEEEEEC-CceecCCeeEECCCCc
Confidence 21 00 0 000 111121 12367788899999998999999999834422222221 2345689999999988
Q ss_pred eee
Q 047325 342 SSS 344 (368)
Q Consensus 342 ~~~ 344 (368)
+.+
T Consensus 304 l~v 306 (343)
T 2qe8_A 304 LYF 306 (343)
T ss_dssp EEE
T ss_pred EEE
Confidence 543
No 220
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=99.32 E-value=4.6e-13 Score=113.19 Aligned_cols=204 Identities=15% Similarity=0.134 Sum_probs=111.4
Q ss_pred EeCCEEEEEeCCCeEEEEeecCCCccccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcCCCCEE
Q 047325 90 ISGEKIFTGHQDGKIRVWKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCGLL 169 (368)
Q Consensus 90 ~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l 169 (368)
..++.+++++.||.|..||..+++....... ..+.+..+..++..+
T Consensus 7 v~~~~v~~gs~dg~v~a~d~~tG~~~W~~~~----------------------------------~~~~s~p~~~~g~~~ 52 (369)
T 2hz6_A 7 LPETLLFVSTLDGSLHAVSKRTGSIKWTLKE----------------------------------DPVLQVPTHVEEPAF 52 (369)
T ss_dssp -CTTEEEEEETTSEEEEEETTTCCEEEEEEC----------------------------------CCSCCCC-----CCE
T ss_pred eeCCEEEEEcCCCEEEEEECCCCCEEEEecC----------------------------------CCceecceEcCCCEE
Confidence 4588999999999999999999886544322 122223334566677
Q ss_pred EEEeCCCcEEEEEccCCeEEEEeecCCC-ceE-EEEeCCCCeEEEEcCCCeEEEEEcCCCCCCcccccceeeccccccEE
Q 047325 170 YTASWDRTFKVWRISDSKCLESVSAHDD-AVN-SVVSSSEGLIFTGSADGTVKVWKREQHGKGTKHSLAQTLLKQECAVT 247 (368)
Q Consensus 170 ~~~~~d~~i~iwd~~~~~~~~~~~~~~~-~v~-~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~i~ 247 (368)
++++.|+.|+.||..+++.+..+..+.. .+. +.....++.+++++.++.++.||.++++. ...+..+.
T Consensus 53 v~~s~dg~l~a~d~~tG~~~w~~~~~~~~~~~~sp~~~~~~~v~~g~~dg~v~a~D~~tG~~------~w~~~~~~---- 122 (369)
T 2hz6_A 53 LPDPNDGSLYTLGSKNNEGLTKLPFTIPELVQASPCRSSDGILYMGKKQDIWYVIDLLTGEK------QQTLSSAF---- 122 (369)
T ss_dssp EECTTTCCEEEC-----CCSEECSCCHHHHHTTCSCC-----CCCCEEEEEEEEECCC----------------------
T ss_pred EEeCCCCEEEEEECCCCceeeeeeccCccccccCceEecCCEEEEEeCCCEEEEEECCCCcE------EEEecCCC----
Confidence 7778999999999999887666543321 111 11112345788888999999999987643 11221111
Q ss_pred EEEEcCCCCEEEEecCCCcEEEEeCCCccccceeeeccceEEEEEEeCC---CEEEEeeCCCeEEEEecCCCceeeeEee
Q 047325 248 ALVVSSSRSIVYCGSSDGLVNFWEREKQLSHGGVLKGHKLAVLCLAAAG---KLVFSGSADKTICVWRRDGAIHTCLSVL 324 (368)
Q Consensus 248 ~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~---~~l~~~~~dg~i~iw~~~~~~~~~~~~~ 324 (368)
...++|++..+++++.|+.|+.||.++++....... +......+..+. ..+++++.||.|+.||..++ +.+...
T Consensus 123 ~~~~~p~~~~v~~~~~dg~v~a~d~~tG~~~W~~~~-~~~~~~~~~~~~~~~~~v~~~~~dg~v~a~d~~tG--~~~W~~ 199 (369)
T 2hz6_A 123 ADSLSPSTSLLYLGRTEYTITMYDTKTRELRWNATY-FDYAASLPEDDVDYKMSHFVSNGDGLVVTVDSESG--DVLWIQ 199 (369)
T ss_dssp ----------EEEEEEEEEEECCCSSSSSCCCEEEE-EEECCBCCCCCTTCCCCEEEEETSCEEEEECTTTC--CEEEEE
T ss_pred cccccccCCEEEEEecCCEEEEEECCCCCEEEeEec-ccccCccccCCccccceEEEECCCCEEEEEECCCC--cEEEEe
Confidence 134566788999999999999999998876543321 111111122221 56778899999999998776 455555
Q ss_pred eccccCee-EEEEecCCe
Q 047325 325 TGHTGPVK-CLAVEEDRD 341 (368)
Q Consensus 325 ~~h~~~v~-~l~~~~~~~ 341 (368)
. ...++. ...+++++.
T Consensus 200 ~-~~~pv~~~~~~~~dg~ 216 (369)
T 2hz6_A 200 N-YASPVVAFYVWQREGL 216 (369)
T ss_dssp E-CSSCEEEEEECTTSSC
T ss_pred c-CCCceEEEEEecCCce
Confidence 4 334443 345556664
No 221
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=99.31 E-value=1.1e-09 Score=100.03 Aligned_cols=284 Identities=15% Similarity=0.151 Sum_probs=163.1
Q ss_pred EecCCEEEEccCCCcEEEEcCCccee--cccC--CC---CCee-EEEEeCCEEEEEe------CCCeEEEEeecCCCccc
Q 047325 51 AASKDLLYTGSDSKNIRVWKNLKEFC--GFKA--SS---GLVK-AIVISGEKIFTGH------QDGKIRVWKISPKNQSV 116 (368)
Q Consensus 51 ~~~~~~l~s~~~dg~i~iw~~~~~~~--~~~~--~~---~~v~-~~~~~~~~l~s~~------~dg~i~vw~~~~~~~~~ 116 (368)
++.++.++.++.|+.|..+|..+... .+.. +. ..+. +-...++.++.++ .+|.|..||..+++...
T Consensus 118 ~~~~g~v~v~~~dg~l~AlDa~TG~~~W~~~~~~~~~~~~~~~~sP~v~~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W 197 (689)
T 1yiq_A 118 AVWKGKVYVGVLDGRLEAIDAKTGQRAWSVDTRADHKRSYTITGAPRVVNGKVVIGNGGAEFGVRGYVTAYDAETGKEAW 197 (689)
T ss_dssp EEETTEEEEECTTSEEEEEETTTCCEEEEEECCSCTTSCCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEE
T ss_pred EEECCEEEEEccCCEEEEEECCCCCEeeeecCcCCCCCCccccCCcEEECCEEEEEeCCCccCCCCEEEEEECCCCcEEE
Confidence 34456788888999999999865422 2221 11 1111 1122356666654 37899999999998765
Q ss_pred cccCCc-cccceeeeeccCCCCce-eEecccceeee---eecCCCEeEEEEcCCCCEEEEEeCCCc--------------
Q 047325 117 HKRAGT-LPTLKDIFKSSIKPSNY-IEVRRHRTALW---IRHSDAVSCMSLDQDCGLLYTASWDRT-------------- 177 (368)
Q Consensus 117 ~~~~~~-~~~~~~~~~~~~~~~~~-~~~~~~~~~~~---~~~~~~v~~~~~~~~~~~l~~~~~d~~-------------- 177 (368)
...... .+.... ..... ..........+ .+.......++++|+..+++.+..++.
T Consensus 198 ~~~~~~~~p~~~~------~~~~~~~~~~~~~g~~w~~~~~g~~~w~~~~~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~ 271 (689)
T 1yiq_A 198 RFYTVPGDPKLPP------EGKGMEIAAKTWFGDAYVEQGGGGTAWDSFAYDPELNLLYIGVGNGSLWDPKWRSQAKGDN 271 (689)
T ss_dssp EEESSCCCTTSCC------CSHHHHHHHTTCCSSTHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHHTTCSCC
T ss_pred EecccCCCccccc------ccccccccccccCCceeeecCCCCccccceeEcCCCCEEEEeCCCCCccccCCCCCCCCCc
Confidence 543211 000000 00000 00000000000 012222346788898889999887763
Q ss_pred -----EEEEEccCCeEEEEeec--CC-------CceEEEEeCCCC----eEEEEcCCCeEEEEEcCCCCCCcccccce--
Q 047325 178 -----FKVWRISDSKCLESVSA--HD-------DAVNSVVSSSEG----LIFTGSADGTVKVWKREQHGKGTKHSLAQ-- 237 (368)
Q Consensus 178 -----i~iwd~~~~~~~~~~~~--~~-------~~v~~~~~~~~~----~l~~~~~dg~i~i~d~~~~~~~~~~~~~~-- 237 (368)
|..+|..+|+.+-.++. |. .++.......+| .++.++.+|.++++|.++++.........
T Consensus 272 ~y~~~v~AlD~~TG~~~W~~~~~~~d~wd~~~~~~~~l~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~ 351 (689)
T 1yiq_A 272 LFLSSIVAVNADTGEYVWHYQTTPGDAWDYTATQHMILAELPIDGKPRKVLMQAPKNGFFYVIDRATGELLSAKGIVPQS 351 (689)
T ss_dssp TTTTEEEEEETTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCS
T ss_pred eeeeeEEEEEccCCceeEeeecCCcccccccCCCCcEEEeeccCCcEEEEEEEECCCCeEEEEECCCCCEeccccccccc
Confidence 99999999999887764 21 111111211234 68889999999999998775321100000
Q ss_pred ---e-----------------eccccc-----------cEEEEEEcCCCCEEEEecC-----------------------
Q 047325 238 ---T-----------------LLKQEC-----------AVTALVVSSSRSIVYCGSS----------------------- 263 (368)
Q Consensus 238 ---~-----------------~~~~~~-----------~i~~~~~~~~~~~l~~~~~----------------------- 263 (368)
. ...... .-..++++|+..++++...
T Consensus 352 w~~~~~~~~~~pi~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~ 431 (689)
T 1yiq_A 352 WTKGMDMKTGRPILDEENAAYWKNGKRNLVTPAFWGAHDWQPMSYNPDTGLVYIPAHIMSAYYEHIPEAPKRNPFKSMYQ 431 (689)
T ss_dssp SEEEEETTTTEEEECHHHHCTTTSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEEECCSSCCCCCSCTTSCC
T ss_pred cccccCccCCCcccchhhccccCCCCeeEeCCCcccccCCCcceECCCCCEEEEeccccceeeeeccccccccccccccc
Confidence 0 000000 0112678888777776522
Q ss_pred ----------------------CCcEEEEeCCCccccceeeeccceEEEEEEeCCCEEEEeeCCCeEEEEecCCCceeee
Q 047325 264 ----------------------DGLVNFWEREKQLSHGGVLKGHKLAVLCLAAAGKLVFSGSADKTICVWRRDGAIHTCL 321 (368)
Q Consensus 264 ----------------------dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~ 321 (368)
+|.|+.||+.+++.......+....--.+...+.+++.|+.||.|+.||.+++ +.+
T Consensus 432 ~g~~~~~~p~~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~~~~~~~g~~~tagglvf~gt~dg~l~a~D~~tG--~~l 509 (689)
T 1yiq_A 432 LGLRTGMMPEGAEGLLEMAKSWSGKLIAWDPVKQQAAWEVPYVTIFNGGTLSTAGNLVFEGSADGRVIAYAADTG--EKL 509 (689)
T ss_dssp CSSEECCCCSSHHHHHHHHTTCEEEEEEEETTTTEEEEEEEESSSCCCCEEEETTTEEEEECTTSEEEEEETTTC--CEE
T ss_pred cCccccccCcccccCCCCCCCcceeEEEEECCCCCeEeEccCCCCccCccceECCCEEEEECCCCcEEEEECCCC--ccc
Confidence 37799999998877644433222222356678889999999999999999887 667
Q ss_pred EeeeccccC-eeEEEEecCCee
Q 047325 322 SVLTGHTGP-VKCLAVEEDRDS 342 (368)
Q Consensus 322 ~~~~~h~~~-v~~l~~~~~~~~ 342 (368)
.++....+. -.-+.|..+|+.
T Consensus 510 w~~~~~~~~~~~p~ty~~~G~q 531 (689)
T 1yiq_A 510 WEQPAASGVMAAPVTYSVDGEQ 531 (689)
T ss_dssp EEEECSSCCCSCCEEEEETTEE
T ss_pred eeeeCCCCcccCceEEEECCEE
Confidence 666544322 244677788874
No 222
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=99.27 E-value=3.9e-09 Score=96.17 Aligned_cols=288 Identities=14% Similarity=0.068 Sum_probs=165.8
Q ss_pred EecCCEEEEccCCCcEEEEcCCcc--eecccCC-C----CCe-eEEEEeCCEEEEEeC------CCeEEEEeecCCCccc
Q 047325 51 AASKDLLYTGSDSKNIRVWKNLKE--FCGFKAS-S----GLV-KAIVISGEKIFTGHQ------DGKIRVWKISPKNQSV 116 (368)
Q Consensus 51 ~~~~~~l~s~~~dg~i~iw~~~~~--~~~~~~~-~----~~v-~~~~~~~~~l~s~~~------dg~i~vw~~~~~~~~~ 116 (368)
++.++.++.++.|+.|..+|..+. +-.+..+ . ..+ ......++.++.++. +|.|+.+|..+++...
T Consensus 125 a~~~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~~p~v~~~~v~v~~~~~~~~~~g~v~a~D~~tG~~~W 204 (677)
T 1kb0_A 125 ALWKGKVYVGAWDGRLIALDAATGKEVWHQNTFEGQKGSLTITGAPRVFKGKVIIGNGGAEYGVRGYITAYDAETGERKW 204 (677)
T ss_dssp EEETTEEEEECTTSEEEEEETTTCCEEEEEETTTTCCSSCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEE
T ss_pred eEECCEEEEEcCCCEEEEEECCCCCEEeeecCCcCcCcCcccccCcEEECCEEEEEecccccCCCCEEEEEECCCCcEEE
Confidence 344567888899999999998643 2233322 1 112 122234677777664 7999999999998766
Q ss_pred cccCCccccceeeeeccCCCCceeEecc--cceeeeeecCCCEeEEEEcCCCCEEEEEeCCC------------------
Q 047325 117 HKRAGTLPTLKDIFKSSIKPSNYIEVRR--HRTALWIRHSDAVSCMSLDQDCGLLYTASWDR------------------ 176 (368)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~------------------ 176 (368)
.................. ........ .......+.......++++|++.+++.+..++
T Consensus 205 ~~~~~~~~~~~~~~~~~~--~~g~~~w~~~g~~~~~~~g~~~w~~~~~d~~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~ 282 (677)
T 1kb0_A 205 RWFSVPGDPSKPFEDESM--KRAARTWDPSGKWWEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYL 282 (677)
T ss_dssp EEESSCCCTTSCCSSHHH--HHHHTTSCGGGCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTT
T ss_pred EeccCCCCcccccccccc--ccccccccccCceeEeCCCcccccceeEcCCCCEEEEECCCCccccCCCCCccCCCCeee
Confidence 544322110000000000 00000000 00000002233334678889888888887664
Q ss_pred -cEEEEEccCCeEEEEeec--CC-------CceEEEEeCCCC----eEEEEcCCCeEEEEEcCCCCCCcccccce-----
Q 047325 177 -TFKVWRISDSKCLESVSA--HD-------DAVNSVVSSSEG----LIFTGSADGTVKVWKREQHGKGTKHSLAQ----- 237 (368)
Q Consensus 177 -~i~iwd~~~~~~~~~~~~--~~-------~~v~~~~~~~~~----~l~~~~~dg~i~i~d~~~~~~~~~~~~~~----- 237 (368)
.|..+|..+|+.+-.++. |. .....+....+| .++.++.+|.++++|.++++.........
T Consensus 283 ~sv~AlD~~TG~~~W~~~~~~~d~wd~~~~~~p~l~~~~~dG~~~~~l~~~~~~G~l~~lD~~tG~~l~~~~~~~~~~~~ 362 (677)
T 1kb0_A 283 ASIVALDPDTGKYKWHYQETPGDNWDYTSTQPMILADIKIAGKPRKVILHAPKNGFFFVLDRTNGKFISAKNFVPVNWAS 362 (677)
T ss_dssp TEEEEECTTTCCEEEEEESSTTCCSCCCCCSCCEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEE
T ss_pred EEEEEEECCCCCEEEEEecCCCcccccccCCCcEEEecccCCcEeeEEEEECCCCEEEEEECCCCCEeccccccccCccc
Confidence 499999999999887764 21 111122222243 68889999999999998775321111000
Q ss_pred eeccccccE------------------------EEEEEcCCCCEEEEecC------------------------------
Q 047325 238 TLLKQECAV------------------------TALVVSSSRSIVYCGSS------------------------------ 263 (368)
Q Consensus 238 ~~~~~~~~i------------------------~~~~~~~~~~~l~~~~~------------------------------ 263 (368)
.+.....++ ..++++|+..++++...
T Consensus 363 ~~d~~g~~~~~~~~~~~~~~~~~~P~~~G~~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 442 (677)
T 1kb0_A 363 GYDKHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNT 442 (677)
T ss_dssp EECTTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEETTTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCC
T ss_pred ccCCCCceeeccccCcCCCccEECcCcccccCCCCceEcCCCCEEEEeChhcceeeeccccccccccccccccccccccc
Confidence 000000011 14678888888877543
Q ss_pred -------------CCcEEEEeCCCccccceeeeccceEEEEEEeCCCEEEEeeCCCeEEEEecCCCceeeeEeeeccc-c
Q 047325 264 -------------DGLVNFWEREKQLSHGGVLKGHKLAVLCLAAAGKLVFSGSADKTICVWRRDGAIHTCLSVLTGHT-G 329 (368)
Q Consensus 264 -------------dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~-~ 329 (368)
.|.|..||+.+++.......+....-..+...+.+++.++.||.+++||..++ +.+..+.... .
T Consensus 443 g~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~~~~~~~g~~~~~g~~v~~g~~dg~l~a~D~~tG--~~lw~~~~~~~~ 520 (677)
T 1kb0_A 443 AKFFNAEPPKSKPFGRLLAWDPVAQKAAWSVEHVSPWNGGTLTTAGNVVFQGTADGRLVAYHAATG--EKLWEAPTGTGV 520 (677)
T ss_dssp CEEECSSCCCSCCEEEEEEEETTTTEEEEEEEESSSCCCCEEEETTTEEEEECTTSEEEEEETTTC--CEEEEEECSSCC
T ss_pred ccccccccCCCCCccEEEEEeCCCCcEEeecCCCCCCcCcceEeCCCEEEEECCCCcEEEEECCCC--ceeeeeeCCCCc
Confidence 27799999998877654433322222346678889999999999999999887 6666665332 2
Q ss_pred CeeEEEEecCCee
Q 047325 330 PVKCLAVEEDRDS 342 (368)
Q Consensus 330 ~v~~l~~~~~~~~ 342 (368)
.-.-+.|..+|+.
T Consensus 521 ~~~p~~y~~~G~~ 533 (677)
T 1kb0_A 521 VAAPSTYMVDGRQ 533 (677)
T ss_dssp CSCCEEEEETTEE
T ss_pred ccCCEEEEeCCEE
Confidence 2344566778764
No 223
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=99.26 E-value=8.4e-09 Score=87.54 Aligned_cols=229 Identities=11% Similarity=0.123 Sum_probs=139.4
Q ss_pred EEecCCEEEEccCCCcEEEEcCCccee--cccCC---------CCCe-eEEEEeCCEEEEEeCCCeEEEEeecCCCcccc
Q 047325 50 LAASKDLLYTGSDSKNIRVWKNLKEFC--GFKAS---------SGLV-KAIVISGEKIFTGHQDGKIRVWKISPKNQSVH 117 (368)
Q Consensus 50 ~~~~~~~l~s~~~dg~i~iw~~~~~~~--~~~~~---------~~~v-~~~~~~~~~l~s~~~dg~i~vw~~~~~~~~~~ 117 (368)
....++.+++++.++.|..+|..+... .+... ...+ ..+...++.++.++.++.|..+|..+++....
T Consensus 49 p~v~~~~v~~~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~g~l~a~d~~tG~~~W~ 128 (376)
T 3q7m_A 49 PALADNVVYAADRAGLVKALNADDGKEIWSVSLAEKDGWFSKEPALLSGGVTVSGGHVYIGSEKAQVYALNTSDGTVAWQ 128 (376)
T ss_dssp CEEETTEEEEECTTSEEEEEETTTCCEEEEEECCC---CCSCCCCCEEEEEEEETTEEEEEETTSEEEEEETTTCCEEEE
T ss_pred cEEECCEEEEEcCCCeEEEEEccCCceeeeecCccccccccccCcccccCceEeCCEEEEEcCCCEEEEEECCCCCEEEE
Confidence 334577888888899999999864322 22221 1222 34455688999999999999999998876544
Q ss_pred ccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcCCCCEEEEEeCCCcEEEEEccCCeEEEEeecCCC
Q 047325 118 KRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCGLLYTASWDRTFKVWRISDSKCLESVSAHDD 197 (368)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~ 197 (368)
....... ...+ ... +..+++++.++.|..+|..+++.+........
T Consensus 129 ~~~~~~~----------------------------~~~p----~~~--~~~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~ 174 (376)
T 3q7m_A 129 TKVAGEA----------------------------LSRP----VVS--DGLVLIHTSNGQLQALNEADGAVKWTVNLDMP 174 (376)
T ss_dssp EECSSCC----------------------------CSCC----EEE--TTEEEEECTTSEEEEEETTTCCEEEEEECCC-
T ss_pred EeCCCce----------------------------EcCC----EEE--CCEEEEEcCCCeEEEEECCCCcEEEEEeCCCC
Confidence 3321100 1111 111 34788888899999999999998877764322
Q ss_pred ce-----EEEEeCCCCeEEEEcCCCeEEEEEcCCCCCCcccccceeeccc-cccEEEEEEcC--CCCEEEEecCCCcEEE
Q 047325 198 AV-----NSVVSSSEGLIFTGSADGTVKVWKREQHGKGTKHSLAQTLLKQ-ECAVTALVVSS--SRSIVYCGSSDGLVNF 269 (368)
Q Consensus 198 ~v-----~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~-~~~i~~~~~~~--~~~~l~~~~~dg~i~i 269 (368)
.. ...... ++.+++++.++.+..+|.+++............... ...+..+...| .+..++.++.++.+..
T Consensus 175 ~~~~~~~~~~~~~-~~~v~~g~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~~~~~v~~~~~~g~l~~ 253 (376)
T 3q7m_A 175 SLSLRGESAPTTA-FGAAVVGGDNGRVSAVLMEQGQMIWQQRISQATGSTEIDRLSDVDTTPVVVNGVVFALAYNGNLTA 253 (376)
T ss_dssp ----CCCCCCEEE-TTEEEECCTTTEEEEEETTTCCEEEEEECCC-----------CCCCCCEEETTEEEEECTTSCEEE
T ss_pred ceeecCCCCcEEE-CCEEEEEcCCCEEEEEECCCCcEEEEEecccCCCCcccccccccCCCcEEECCEEEEEecCcEEEE
Confidence 11 111111 457888889999999999876431111100000000 00000011111 2467778888999999
Q ss_pred EeCCCccccceeeeccceEEEEEEeCCCEEEEeeCCCeEEEEecCCC
Q 047325 270 WEREKQLSHGGVLKGHKLAVLCLAAAGKLVFSGSADKTICVWRRDGA 316 (368)
Q Consensus 270 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~ 316 (368)
+|.++++....... ........++..++.++.++.|..+|..++
T Consensus 254 ~d~~tG~~~w~~~~---~~~~~~~~~~~~l~~~~~~g~l~~~d~~tG 297 (376)
T 3q7m_A 254 LDLRSGQIMWKREL---GSVNDFIVDGNRIYLVDQNDRVMALTIDGG 297 (376)
T ss_dssp EETTTCCEEEEECC---CCEEEEEEETTEEEEEETTCCEEEEETTTC
T ss_pred EECCCCcEEeeccC---CCCCCceEECCEEEEEcCCCeEEEEECCCC
Confidence 99988766533221 123344556888888899999999998776
No 224
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=99.23 E-value=4e-09 Score=89.64 Aligned_cols=228 Identities=10% Similarity=0.024 Sum_probs=135.4
Q ss_pred CcEEEEcCCcc--eecccCCCCCeeEEEEe--CCEEEEEe----------CCCeEEEEeecCCCccccccCCccccceee
Q 047325 64 KNIRVWKNLKE--FCGFKASSGLVKAIVIS--GEKIFTGH----------QDGKIRVWKISPKNQSVHKRAGTLPTLKDI 129 (368)
Q Consensus 64 g~i~iw~~~~~--~~~~~~~~~~v~~~~~~--~~~l~s~~----------~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~ 129 (368)
+.|.+.|..+. +..+..-..+ .+.++ +++++.+. .++.|.++|..+.+.............
T Consensus 99 ~~VsVID~~t~~vv~~I~vG~~P--gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~vv~~I~v~g~~r~--- 173 (426)
T 3c75_H 99 TQQFVIDGSTGRILGMTDGGFLP--HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTFLPIADIELPDAPRF--- 173 (426)
T ss_dssp EEEEEEETTTTEEEEEEEECSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCC---
T ss_pred CeEEEEECCCCEEEEEEECCCCC--ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCCcEEEEEECCCcccc---
Confidence 79999998753 3333333334 67777 77777765 467899999998875443322100000
Q ss_pred eeccCCCCceeEecccceeeeeecCCCEeEEEEcCCCCEEEEEeC--CCcEEEEEccCCeEEEEeecCCC-------ceE
Q 047325 130 FKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCGLLYTASW--DRTFKVWRISDSKCLESVSAHDD-------AVN 200 (368)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~--d~~i~iwd~~~~~~~~~~~~~~~-------~v~ 200 (368)
........+.++||+++++++.. ++.|.+.|+.+++.+..+..... .-.
T Consensus 174 ----------------------~~g~~P~~~~~spDGk~lyV~n~~~~~~VsVID~~t~kvv~~I~v~g~~~~~p~g~~~ 231 (426)
T 3c75_H 174 ----------------------LVGTYQWMNALTPDNKNLLFYQFSPAPAVGVVDLEGKTFDRMLDVPDCYHIFPASPTV 231 (426)
T ss_dssp ----------------------CBSCCGGGSEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSEEEEEEEETTE
T ss_pred ----------------------ccCCCcceEEEcCCCCEEEEEecCCCCeEEEEECCCCeEEEEEEcCCceeeccCCCcE
Confidence 00122345788899988888764 57889999988887776653211 000
Q ss_pred EEEe-------------------------------------CCCC-eEEEEcCCCeEEEEEcCCCCCCcccccceeec--
Q 047325 201 SVVS-------------------------------------SSEG-LIFTGSADGTVKVWKREQHGKGTKHSLAQTLL-- 240 (368)
Q Consensus 201 ~~~~-------------------------------------~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~-- 240 (368)
.+.+ .+++ .++.....+.+.+.|...... .....+.
T Consensus 232 ~v~~~~dG~~~~V~~~~~~v~~~~~~~~~v~~~p~~~~~~~~~dg~~~~~~s~~g~V~ViD~~~~~~----~v~~~~~~~ 307 (426)
T 3c75_H 232 FYMNCRDGSLARVDFADGETKVTNTEVFHTEDELLINHPAFSLRSGRLVWPTYTGKIFQADLTAEGA----TFRAPIEAL 307 (426)
T ss_dssp EEEEETTSSEEEEECCTTCCEEEECCCCSCTTSCBCSCCEECTTTCEEEEEBTTSEEEEEEECSSCE----EECCCEESS
T ss_pred EEEEcCCCCEEEEECCCCcEEEEeeeeeccCCCceeeEeeecCCCCEEEEEeCCCcEEEEeccCCce----EEeeeeeec
Confidence 0122 2222 222223344455555432210 0000000
Q ss_pred --------cccccEEEEEEcCCCCEEEEecC----------CCcEEEEeCCCccccceeeeccceEEEEEEeCCC-EEEE
Q 047325 241 --------KQECAVTALVVSSSRSIVYCGSS----------DGLVNFWEREKQLSHGGVLKGHKLAVLCLAAAGK-LVFS 301 (368)
Q Consensus 241 --------~~~~~i~~~~~~~~~~~l~~~~~----------dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~ 301 (368)
........++++|+++.+++... ++.|.++|..+.+.......+....-+.+++|++ ++++
T Consensus 308 ~~~~i~~g~~p~g~~~va~s~dg~rlyVa~~~~~~gthk~~s~~VsVID~~T~kvv~~I~vg~~P~gia~spDg~~~lyv 387 (426)
T 3c75_H 308 TEAERADDWRPGGWQQTAYHRQSDRIYLLVDQRDEWKHKAASRFVVVLNAETGERINKIELGHEIDSINVSQDAEPLLYA 387 (426)
T ss_dssp CTTTGGGTEEECSSSCEEEEGGGTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEEEEECEEEECCSSSCEEEE
T ss_pred cccccccccccCCceeeEEcCCCCEEEEEecccccccccCCCCEEEEEECCCCeEEEEEECCCCcCeEEEccCCCEEEEE
Confidence 00111123688999887777642 3579999999987776665555555678899998 8888
Q ss_pred ee-CCCeEEEEecCCCceeeeEee
Q 047325 302 GS-ADKTICVWRRDGAIHTCLSVL 324 (368)
Q Consensus 302 ~~-~dg~i~iw~~~~~~~~~~~~~ 324 (368)
.. .++.|.++|..+. +.+.++
T Consensus 388 ~n~~s~~VsVID~~t~--kvv~tI 409 (426)
T 3c75_H 388 LSAGTQTLHIYDAATG--EELRSV 409 (426)
T ss_dssp EETTTTEEEEEETTTC--CEEEEE
T ss_pred EcCCCCeEEEEECCCC--CEEEEe
Confidence 87 5999999999887 556665
No 225
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=99.22 E-value=2.3e-10 Score=95.22 Aligned_cols=239 Identities=14% Similarity=0.111 Sum_probs=140.7
Q ss_pred EEec-CCEEEEccCCCcEEEEcCCcc--eecccCCCCCeeEEEEe-CCEEEEEeCCCeEEEEeecCCCccccccCCcccc
Q 047325 50 LAAS-KDLLYTGSDSKNIRVWKNLKE--FCGFKASSGLVKAIVIS-GEKIFTGHQDGKIRVWKISPKNQSVHKRAGTLPT 125 (368)
Q Consensus 50 ~~~~-~~~l~s~~~dg~i~iw~~~~~--~~~~~~~~~~v~~~~~~-~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~ 125 (368)
...+ ...++.++.++.|..|| .+. ...+..+...+.++... +..|+.++.+ |..+|. +++........
T Consensus 25 ~~~d~~g~l~v~t~~~~l~~~d-~~g~~~~~~~~~~~~~~~~~~~~~g~l~v~t~~--l~~~d~-~g~~~~~~~~~---- 96 (330)
T 3hxj_A 25 PILAKNGTIYLGSSNKNLYAIN-TDGSVKWFFKSGEIIECRPSIGKDGTIYFGSDK--VYAINP-DGTEKWRFDTK---- 96 (330)
T ss_dssp CEECTTSCEECSSTTTTTEEEC-TTSCEEESSCGGGEEEECCEETTTTEECCSSCE--EEEECC-CGGGGGGSCC-----
T ss_pred ceEccCCeEEEEcCCCEEEEEC-CCCcEEEEEecCCCcccceEEecCCcEEEecCc--EEEECC-CCcEEEEEECC----
Confidence 4443 44777888888899999 433 22233333445666665 6677777665 777775 44433222211
Q ss_pred ceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcCCCCEEEEEeCCCcEEEEEccCCeEEEEeecCCCceEEEEeC
Q 047325 126 LKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCGLLYTASWDRTFKVWRISDSKCLESVSAHDDAVNSVVSS 205 (368)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~ 205 (368)
........+. +..+..++.++.|..+|.. ++.......+...+.++...
T Consensus 97 ----------------------------~~~~~~~~~~--~~~l~v~t~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~ 145 (330)
T 3hxj_A 97 ----------------------------KAIVSDFTIF--EDILYVTSMDGHLYAINTD-GTEKWRFKTKKAIYATPIVS 145 (330)
T ss_dssp --------------------------------CCEEEE--TTEEEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCEEC
T ss_pred ----------------------------CCcccCceEE--CCEEEEEecCCEEEEEcCC-CCEEEEEcCCCceeeeeEEc
Confidence 0111112222 4567888888999999988 77777766666666777777
Q ss_pred CCCeEEEEcCCCeEEEEEcCCCCCCcccccceeeccccccEEEEEEcCCCCEEEEecCCCcEEEEeCCCccccceeeecc
Q 047325 206 SEGLIFTGSADGTVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSSSRSIVYCGSSDGLVNFWEREKQLSHGGVLKGH 285 (368)
Q Consensus 206 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~ 285 (368)
+++.++.++.++.|..+|.. +. ...........+.++...+++.+.+ ++ +.|..+| .++..... ....
T Consensus 146 ~~g~l~vgt~~~~l~~~d~~-g~------~~~~~~~~~~~~~~~~~d~~g~l~v-~t--~~l~~~d-~~g~~~~~-~~~~ 213 (330)
T 3hxj_A 146 EDGTIYVGSNDNYLYAINPD-GT------EKWRFKTNDAITSAASIGKDGTIYF-GS--DKVYAIN-PDGTEKWN-FYAG 213 (330)
T ss_dssp TTSCEEEECTTSEEEEECTT-SC------EEEEEECSSCCCSCCEECTTCCEEE-ES--SSEEEEC-TTSCEEEE-ECCS
T ss_pred CCCEEEEEcCCCEEEEECCC-CC------EeEEEecCCCceeeeEEcCCCEEEE-Ee--CEEEEEC-CCCcEEEE-EccC
Confidence 78888888989999999987 32 1222222334456666777776554 44 7799999 55443322 2222
Q ss_pred ceEEEEEEeCCC-EEEEeeCCCeEEEEecCCCceeeeEeeeccccCeeEEEEecCCee
Q 047325 286 KLAVLCLAAAGK-LVFSGSADKTICVWRRDGAIHTCLSVLTGHTGPVKCLAVEEDRDS 342 (368)
Q Consensus 286 ~~~~~~~~~~~~-~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~ 342 (368)
...+.++..+.+ .|..++.++.|..++... ..+..+......+.++.+.+++.+
T Consensus 214 ~~~~~~~~~~~~g~l~v~t~~~gl~~~~~~g---~~~~~~~~~~~~~~~~~~~~~g~l 268 (330)
T 3hxj_A 214 YWTVTRPAISEDGTIYVTSLDGHLYAINPDG---TEKWRFKTGKRIESSPVIGNTDTI 268 (330)
T ss_dssp SCCCSCCEECTTSCEEEEETTTEEEEECTTS---CEEEEEECSSCCCSCCEECTTSCE
T ss_pred CcceeceEECCCCeEEEEcCCCeEEEECCCC---CEeEEeeCCCCccccceEcCCCeE
Confidence 233334444432 667777788888886433 333444434444455566656653
No 226
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=99.21 E-value=1.4e-09 Score=99.81 Aligned_cols=242 Identities=15% Similarity=0.109 Sum_probs=140.0
Q ss_pred CcCCcEEEEEecCC--EEE-----EccCCCcEEEEcCCccee-cccCCCCCeeEEEEe-CCEEEEEeCCCe---------
Q 047325 42 REEGHIYSLAASKD--LLY-----TGSDSKNIRVWKNLKEFC-GFKASSGLVKAIVIS-GEKIFTGHQDGK--------- 103 (368)
Q Consensus 42 ~h~~~i~~~~~~~~--~l~-----s~~~dg~i~iw~~~~~~~-~~~~~~~~v~~~~~~-~~~l~s~~~dg~--------- 103 (368)
+|...+..++|+++ +|| .|+.+.+|++||+.+... ....+......++|+ ++.|+.++.+..
T Consensus 126 ~~~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~~~~~~k~~~~~WsDg~~l~y~~~~~~~~~~~~~~~ 205 (693)
T 3iuj_A 126 DGTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLETPLKDVKFSGISWLGNEGFFYSSYDKPDGSELSART 205 (693)
T ss_dssp TSCCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEEEEEEEESCCCEEETTTEEEEEESSCCC-------C
T ss_pred CCcEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCccccCCceeccEEEeCCCEEEEEEecCcccccccccC
Confidence 35556788888766 666 344456899999875432 111111112344555 778888877743
Q ss_pred ----EEEEeecCCCccccccCCccccceeeeeccCCCCceeEecccceeeeee-cCCCEeEEEEcCCCCEEEEEeC----
Q 047325 104 ----IRVWKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIR-HSDAVSCMSLDQDCGLLYTASW---- 174 (368)
Q Consensus 104 ----i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~---- 174 (368)
|++|++.+......... .... |...+..+.++||+++|+....
T Consensus 206 ~~~~v~~~~lgt~~~~~~~v~----------------------------~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~ 257 (693)
T 3iuj_A 206 DQHKVYFHRLGTAQEDDRLVF----------------------------GAIPAQHHRYVGATVTEDDRFLLISAANSTS 257 (693)
T ss_dssp CCCEEEEEETTSCGGGCEEEE----------------------------SCSGGGCCSEEEEEECTTSCEEEEEEESSSS
T ss_pred CCcEEEEEECCCCcccceEEE----------------------------ecCCCCCeEEEEEEEcCCCCEEEEEEccCCC
Confidence 88888776542111000 0011 2345678999999998765442
Q ss_pred CCcEEEEEccCCe-EEEEeecCCCceEEEEeCCCC--eEEEEcCC---CeEEEEEcCCCCCCcccccceeeccccccEEE
Q 047325 175 DRTFKVWRISDSK-CLESVSAHDDAVNSVVSSSEG--LIFTGSAD---GTVKVWKREQHGKGTKHSLAQTLLKQECAVTA 248 (368)
Q Consensus 175 d~~i~iwd~~~~~-~~~~~~~~~~~v~~~~~~~~~--~l~~~~~d---g~i~i~d~~~~~~~~~~~~~~~~~~~~~~i~~ 248 (368)
++.|.++|+.++. ....+..+....... +.+++ +++....+ +.|..+|+..... .....+..+...+.
T Consensus 258 ~~~i~~~d~~~~~~~~~~l~~~~~~~~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~----~~~~~l~~~~~~~~- 331 (693)
T 3iuj_A 258 GNRLYVKDLSQENAPLLTVQGDLDADVSL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGP----AHWRDLIPERQQVL- 331 (693)
T ss_dssp CCEEEEEETTSTTCCCEEEECSSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEETTSCCG----GGCEEEECCCSSCE-
T ss_pred CcEEEEEECCCCCCceEEEeCCCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCc----cccEEEecCCCCEE-
Confidence 2589999997763 344555555555554 44444 44444443 6899999876522 01123344444444
Q ss_pred EEEcCCCCEEEEecCCC---cEEEEeCCCccccceeeeccceEEEEE--EeCCCEEEEeeCC----CeEEEEecCCCcee
Q 047325 249 LVVSSSRSIVYCGSSDG---LVNFWEREKQLSHGGVLKGHKLAVLCL--AAAGKLVFSGSAD----KTICVWRRDGAIHT 319 (368)
Q Consensus 249 ~~~~~~~~~l~~~~~dg---~i~i~d~~~~~~~~~~~~~~~~~~~~~--~~~~~~l~~~~~d----g~i~iw~~~~~~~~ 319 (368)
.|+++++.|+....++ .|++||+..+... .........+..+ +++++.|+....+ +.|+.||+.++...
T Consensus 332 -~~s~~g~~lv~~~~~~g~~~l~~~d~~g~~~~-~l~~p~~~~~~~~~~~~d~~~l~~~~ss~~tP~~l~~~d~~~g~~~ 409 (693)
T 3iuj_A 332 -TVHSGSGYLFAEYMVDATARVEQFDYEGKRVR-EVALPGLGSVSGFNGKHDDPALYFGFENYAQPPTLYRFEPKSGAIS 409 (693)
T ss_dssp -EEEEETTEEEEEEEETTEEEEEEECTTSCEEE-EECCSSSSEEEECCCCTTCSCEEEEEECSSSCCEEEEECTTTCCEE
T ss_pred -EEEEECCEEEEEEEECCeeEEEEEECCCCeeE-EeecCCCceEEeeecCCCCCEEEEEecCCCCCCEEEEEECCCCeEE
Confidence 7888888877765544 6889998754332 2222233344444 3566655554444 78999988765433
No 227
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=99.20 E-value=2e-09 Score=98.81 Aligned_cols=221 Identities=13% Similarity=0.121 Sum_probs=133.5
Q ss_pred CCCCeeEEEEe--CCEEEEE-----eCCCeEEEEeecCCCccccccCCccccceeeeeccCCCCceeEecccceeeeeec
Q 047325 81 SSGLVKAIVIS--GEKIFTG-----HQDGKIRVWKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRH 153 (368)
Q Consensus 81 ~~~~v~~~~~~--~~~l~s~-----~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (368)
|...+..++|+ |++|+-+ +.+..|++||+.+++..... + .
T Consensus 127 ~~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~~-------------------------------~--~ 173 (693)
T 3iuj_A 127 GTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLETP-------------------------------L--K 173 (693)
T ss_dssp SCCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEEE-------------------------------E--E
T ss_pred CcEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCccc-------------------------------c--C
Confidence 55577888888 6777633 23357999999988632110 0 1
Q ss_pred CCCEeEEEEcCCCCEEEEEeCCCc-------------EEEEEccCCe----EEEEeec-CCCceEEEEeCCCC-eE-EEE
Q 047325 154 SDAVSCMSLDQDCGLLYTASWDRT-------------FKVWRISDSK----CLESVSA-HDDAVNSVVSSSEG-LI-FTG 213 (368)
Q Consensus 154 ~~~v~~~~~~~~~~~l~~~~~d~~-------------i~iwd~~~~~----~~~~~~~-~~~~v~~~~~~~~~-~l-~~~ 213 (368)
......++|+ |++.|+.+..+.. |++|++.++. .+..... +......+.++|++ +| ++.
T Consensus 174 ~~k~~~~~Ws-Dg~~l~y~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~ 252 (693)
T 3iuj_A 174 DVKFSGISWL-GNEGFFYSSYDKPDGSELSARTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISA 252 (693)
T ss_dssp EEESCCCEEE-TTTEEEEEESSCCC-------CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEE
T ss_pred CceeccEEEe-CCCEEEEEEecCcccccccccCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEE
Confidence 1112467899 9999988887743 9999987754 3333333 44557789999999 44 333
Q ss_pred c---CCCeEEEEEcCCCCCCcccccceeeccccccEEEEEEcCCCCEEE-EecCC---CcEEEEeCCCccc-cceeeecc
Q 047325 214 S---ADGTVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSSSRSIVY-CGSSD---GLVNFWEREKQLS-HGGVLKGH 285 (368)
Q Consensus 214 ~---~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~-~~~~d---g~i~i~d~~~~~~-~~~~~~~~ 285 (368)
. .+..|+++|+..... ....+..+....... +++++..|+ ....+ +.|..+|+.++.. ....+..|
T Consensus 253 ~~~~~~~~i~~~d~~~~~~-----~~~~l~~~~~~~~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~ 326 (693)
T 3iuj_A 253 ANSTSGNRLYVKDLSQENA-----PLLTVQGDLDADVSL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPE 326 (693)
T ss_dssp ESSSSCCEEEEEETTSTTC-----CCEEEECSSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECC
T ss_pred ccCCCCcEEEEEECCCCCC-----ceEEEeCCCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEecC
Confidence 3 235899999876431 123333344444443 555555544 44433 5799999887543 11233333
Q ss_pred ceEEEEEEeCCCEEEEeeC-CC--eEEEEecCCCceeeeEeee-ccccCeeEEEEecCCeeee
Q 047325 286 KLAVLCLAAAGKLVFSGSA-DK--TICVWRRDGAIHTCLSVLT-GHTGPVKCLAVEEDRDSSS 344 (368)
Q Consensus 286 ~~~~~~~~~~~~~l~~~~~-dg--~i~iw~~~~~~~~~~~~~~-~h~~~v~~l~~~~~~~~~~ 344 (368)
...+..++++++.|+.... ++ .|++|+++... ...+. .....+..+.+++++..+.
T Consensus 327 ~~~~~~~s~~g~~lv~~~~~~g~~~l~~~d~~g~~---~~~l~~p~~~~~~~~~~~~d~~~l~ 386 (693)
T 3iuj_A 327 RQQVLTVHSGSGYLFAEYMVDATARVEQFDYEGKR---VREVALPGLGSVSGFNGKHDDPALY 386 (693)
T ss_dssp CSSCEEEEEETTEEEEEEEETTEEEEEEECTTSCE---EEEECCSSSSEEEECCCCTTCSCEE
T ss_pred CCCEEEEEEECCEEEEEEEECCeeEEEEEECCCCe---eEEeecCCCceEEeeecCCCCCEEE
Confidence 3333389999888776655 44 68888877542 22222 2344567777787776544
No 228
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=99.18 E-value=1.9e-09 Score=98.24 Aligned_cols=194 Identities=7% Similarity=0.060 Sum_probs=116.9
Q ss_pred cCCEEEEccCCCcEEEEcCCccee--cccCCCC-----------CeeEEEEeCCEEEEEeCCCeEEEEeecCCCcccccc
Q 047325 53 SKDLLYTGSDSKNIRVWKNLKEFC--GFKASSG-----------LVKAIVISGEKIFTGHQDGKIRVWKISPKNQSVHKR 119 (368)
Q Consensus 53 ~~~~l~s~~~dg~i~iw~~~~~~~--~~~~~~~-----------~v~~~~~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~ 119 (368)
.++.++.++.++.|.-+|..+... .+..... ....+.+.++.++.++.|+.|..+|..+++......
T Consensus 76 ~~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~a~~~~~v~v~~~dg~l~alD~~tG~~~W~~~ 155 (677)
T 1kb0_A 76 VDGIMYVSASWSVVHAIDTRTGNRIWTYDPQIDRSTGFKGCCDVVNRGVALWKGKVYVGAWDGRLIALDAATGKEVWHQN 155 (677)
T ss_dssp ETTEEEEECGGGCEEEEETTTTEEEEEECCCCCGGGGGGSSSCSCCCCCEEETTEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred ECCEEEEECCCCeEEEEECCCCcEEEEEcCCCCccccccccccCCCCCceEECCEEEEEcCCCEEEEEECCCCCEEeeec
Confidence 466677777788899898764432 2221110 113455678899999999999999999998765544
Q ss_pred CC-ccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcCCCCEEEEEeC------CCcEEEEEccCCeEEEEe
Q 047325 120 AG-TLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCGLLYTASW------DRTFKVWRISDSKCLESV 192 (368)
Q Consensus 120 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~------d~~i~iwd~~~~~~~~~~ 192 (368)
.. ...... .....++ + .+..+++++. ++.|+.+|..+|+.+-.+
T Consensus 156 ~~~~~~~~~-----------------------~~~~~p~----v--~~~~v~v~~~~~~~~~~g~v~a~D~~tG~~~W~~ 206 (677)
T 1kb0_A 156 TFEGQKGSL-----------------------TITGAPR----V--FKGKVIIGNGGAEYGVRGYITAYDAETGERKWRW 206 (677)
T ss_dssp TTTTCCSSC-----------------------BCCSCCE----E--ETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEE
T ss_pred CCcCcCcCc-----------------------ccccCcE----E--ECCEEEEEecccccCCCCEEEEEECCCCcEEEEe
Confidence 32 100000 0011111 1 1335555543 689999999999998777
Q ss_pred ecCCCc--------------------------------eEEEEeCCCC-eEEEEcCCC-------------------eEE
Q 047325 193 SAHDDA--------------------------------VNSVVSSSEG-LIFTGSADG-------------------TVK 220 (368)
Q Consensus 193 ~~~~~~--------------------------------v~~~~~~~~~-~l~~~~~dg-------------------~i~ 220 (368)
...... ...+++.+++ .++.+..++ .|.
T Consensus 207 ~~~~~~~~~~~~~~~~~~g~~~w~~~g~~~~~~~g~~~w~~~~~d~~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~ 286 (677)
T 1kb0_A 207 FSVPGDPSKPFEDESMKRAARTWDPSGKWWEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIV 286 (677)
T ss_dssp ESSCCCTTSCCSSHHHHHHHTTSCGGGCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEE
T ss_pred ccCCCCccccccccccccccccccccCceeEeCCCcccccceeEcCCCCEEEEECCCCccccCCCCCccCCCCeeeEEEE
Confidence 542211 1235666666 777776654 588
Q ss_pred EEEcCCCCCCcccccceeeccc-------cccEEEEEEcCCC---CEEEEecCCCcEEEEeCCCccccc
Q 047325 221 VWKREQHGKGTKHSLAQTLLKQ-------ECAVTALVVSSSR---SIVYCGSSDGLVNFWEREKQLSHG 279 (368)
Q Consensus 221 i~d~~~~~~~~~~~~~~~~~~~-------~~~i~~~~~~~~~---~~l~~~~~dg~i~i~d~~~~~~~~ 279 (368)
.+|.+++...... ....+ ......+....+| +.++.++.+|.++++|.++++.+.
T Consensus 287 AlD~~TG~~~W~~----~~~~~d~wd~~~~~~p~l~~~~~dG~~~~~l~~~~~~G~l~~lD~~tG~~l~ 351 (677)
T 1kb0_A 287 ALDPDTGKYKWHY----QETPGDNWDYTSTQPMILADIKIAGKPRKVILHAPKNGFFFVLDRTNGKFIS 351 (677)
T ss_dssp EECTTTCCEEEEE----ESSTTCCSCCCCCSCCEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEE
T ss_pred EEECCCCCEEEEE----ecCCCcccccccCCCcEEEecccCCcEeeEEEEECCCCEEEEEECCCCCEec
Confidence 8998876432111 11111 1112223333467 689999999999999999877653
No 229
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=99.17 E-value=6.5e-12 Score=106.12 Aligned_cols=184 Identities=11% Similarity=0.100 Sum_probs=96.4
Q ss_pred EecCCEEEEccCCCcEEEEcCCcce--ecccCCCCCeeEEEE-e-CCEEEEEeCCCeEEEEeecCCCccccccCCccccc
Q 047325 51 AASKDLLYTGSDSKNIRVWKNLKEF--CGFKASSGLVKAIVI-S-GEKIFTGHQDGKIRVWKISPKNQSVHKRAGTLPTL 126 (368)
Q Consensus 51 ~~~~~~l~s~~~dg~i~iw~~~~~~--~~~~~~~~~v~~~~~-~-~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~ 126 (368)
+..++.+++++.||.|+.||..+.. ..+.. +.+.+..+ . +..+++++.||.|+.||.++++.............
T Consensus 6 ~v~~~~v~~gs~dg~v~a~d~~tG~~~W~~~~--~~~~s~p~~~~g~~~v~~s~dg~l~a~d~~tG~~~w~~~~~~~~~~ 83 (369)
T 2hz6_A 6 TLPETLLFVSTLDGSLHAVSKRTGSIKWTLKE--DPVLQVPTHVEEPAFLPDPNDGSLYTLGSKNNEGLTKLPFTIPELV 83 (369)
T ss_dssp --CTTEEEEEETTSEEEEEETTTCCEEEEEEC--CCSCCCC-----CCEEECTTTCCEEEC-----CCSEECSCCHHHHH
T ss_pred eeeCCEEEEEcCCCEEEEEECCCCCEEEEecC--CCceecceEcCCCEEEEeCCCCEEEEEECCCCceeeeeeccCcccc
Confidence 3467789999999999999987543 23333 33433322 2 55777778999999999988875443322100000
Q ss_pred eeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcCCCCEEEEEeCCCcEEEEEccCCeEEEEeecCCCceEEEEeCC
Q 047325 127 KDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCGLLYTASWDRTFKVWRISDSKCLESVSAHDDAVNSVVSSS 206 (368)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~ 206 (368)
...++. . ++..+++++.|+.|+.||..+|+.+..+..+.. ..++|
T Consensus 84 --------------------------~~sp~~----~-~~~~v~~g~~dg~v~a~D~~tG~~~w~~~~~~~----~~~~p 128 (369)
T 2hz6_A 84 --------------------------QASPCR----S-SDGILYMGKKQDIWYVIDLLTGEKQQTLSSAFA----DSLSP 128 (369)
T ss_dssp --------------------------TTCSCC----------CCCCEEEEEEEEECCC----------------------
T ss_pred --------------------------ccCceE----e-cCCEEEEEeCCCEEEEEECCCCcEEEEecCCCc----ccccc
Confidence 011111 1 234677788899999999999998877765432 23445
Q ss_pred CC-eEEEEcCCCeEEEEEcCCCCCCcccccceeeccccccEEEEEEcCCC---CEEEEecCCCcEEEEeCCCccccc
Q 047325 207 EG-LIFTGSADGTVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSSSR---SIVYCGSSDGLVNFWEREKQLSHG 279 (368)
Q Consensus 207 ~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~---~~l~~~~~dg~i~i~d~~~~~~~~ 279 (368)
++ .+++++.|+.|+.||.+++....... . . ......+.++. ..+++++.||.++.||.++++...
T Consensus 129 ~~~~v~~~~~dg~v~a~d~~tG~~~W~~~----~--~--~~~~~~~~~~~~~~~~v~~~~~dg~v~a~d~~tG~~~W 197 (369)
T 2hz6_A 129 STSLLYLGRTEYTITMYDTKTRELRWNAT----Y--F--DYAASLPEDDVDYKMSHFVSNGDGLVVTVDSESGDVLW 197 (369)
T ss_dssp ----EEEEEEEEEEECCCSSSSSCCCEEE----E--E--EECCBCCCCCTTCCCCEEEEETSCEEEEECTTTCCEEE
T ss_pred cCCEEEEEecCCEEEEEECCCCCEEEeEe----c--c--cccCccccCCccccceEEEECCCCEEEEEECCCCcEEE
Confidence 55 88889999999999998764322111 1 0 11222333322 567778899999999999877653
No 230
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=99.16 E-value=5.4e-09 Score=95.46 Aligned_cols=193 Identities=8% Similarity=0.064 Sum_probs=115.2
Q ss_pred cCCEEEEccCCCcEEEEcCCccee--cccCCCC----------C-eeEEEEeCCEEEEEeCCCeEEEEeecCCCcccccc
Q 047325 53 SKDLLYTGSDSKNIRVWKNLKEFC--GFKASSG----------L-VKAIVISGEKIFTGHQDGKIRVWKISPKNQSVHKR 119 (368)
Q Consensus 53 ~~~~l~s~~~dg~i~iw~~~~~~~--~~~~~~~----------~-v~~~~~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~ 119 (368)
.++.+++++.++.|.-+|..+... .+..... . -..+.+.+..++.++.|+.|..+|..+++......
T Consensus 69 ~~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~v~~~dg~l~AlDa~TG~~~W~~~ 148 (689)
T 1yiq_A 69 VDGVMYTTGPFSVVYALDARDGRLIWKYDPQSDRHRAGEACCDAVNRGVAVWKGKVYVGVLDGRLEAIDAKTGQRAWSVD 148 (689)
T ss_dssp ETTEEEEECGGGCEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEEETTEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred ECCEEEEEcCCCeEEEEECCCCceeEEEcCCCCccccccccccCCCCccEEECCEEEEEccCCEEEEEECCCCCEeeeec
Confidence 466777788888999999764322 2222111 0 12345568899999999999999999998765543
Q ss_pred CC-ccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcCCCCEEEEEe------CCCcEEEEEccCCeEEEEe
Q 047325 120 AG-TLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCGLLYTAS------WDRTFKVWRISDSKCLESV 192 (368)
Q Consensus 120 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~------~d~~i~iwd~~~~~~~~~~ 192 (368)
.. ..... +.....++. . ++ .+++++ .++.|..||..+|+.+-.+
T Consensus 149 ~~~~~~~~-----------------------~~~~~sP~v----~-~g-~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~ 199 (689)
T 1yiq_A 149 TRADHKRS-----------------------YTITGAPRV----V-NG-KVVIGNGGAEFGVRGYVTAYDAETGKEAWRF 199 (689)
T ss_dssp CCSCTTSC-----------------------CBCCSCCEE----E-TT-EEEECCBCTTTCCBCEEEEEETTTCCEEEEE
T ss_pred CcCCCCCC-----------------------ccccCCcEE----E-CC-EEEEEeCCCccCCCCEEEEEECCCCcEEEEe
Confidence 32 00000 000111111 1 33 444443 3689999999999988776
Q ss_pred ecCC---C----------------------------ceEEEEeCCCC-eEEEEcCCCe-------------------EEE
Q 047325 193 SAHD---D----------------------------AVNSVVSSSEG-LIFTGSADGT-------------------VKV 221 (368)
Q Consensus 193 ~~~~---~----------------------------~v~~~~~~~~~-~l~~~~~dg~-------------------i~i 221 (368)
.... . .-..+++.|++ .++.+..++. |..
T Consensus 200 ~~~~~~p~~~~~~~~~~~~~~~~~g~~w~~~~~g~~~w~~~~~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~A 279 (689)
T 1yiq_A 200 YTVPGDPKLPPEGKGMEIAAKTWFGDAYVEQGGGGTAWDSFAYDPELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVA 279 (689)
T ss_dssp ESSCCCTTSCCCSHHHHHHHTTCCSSTHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHHTTCSCCTTTTEEEE
T ss_pred cccCCCcccccccccccccccccCCceeeecCCCCccccceeEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEE
Confidence 5210 0 01145666655 8888877764 999
Q ss_pred EEcCCCCCCcccccceeeccc-------cccEEEEEEcCCCC---EEEEecCCCcEEEEeCCCcccc
Q 047325 222 WKREQHGKGTKHSLAQTLLKQ-------ECAVTALVVSSSRS---IVYCGSSDGLVNFWEREKQLSH 278 (368)
Q Consensus 222 ~d~~~~~~~~~~~~~~~~~~~-------~~~i~~~~~~~~~~---~l~~~~~dg~i~i~d~~~~~~~ 278 (368)
+|.++++.....+ ...+ ...+.......+++ .++.++.+|.++++|.++++.+
T Consensus 280 lD~~TG~~~W~~~----~~~~d~wd~~~~~~~~l~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l 342 (689)
T 1yiq_A 280 VNADTGEYVWHYQ----TTPGDAWDYTATQHMILAELPIDGKPRKVLMQAPKNGFFYVIDRATGELL 342 (689)
T ss_dssp EETTTCCEEEEEE----SSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEE
T ss_pred EEccCCceeEeee----cCCcccccccCCCCcEEEeeccCCcEEEEEEEECCCCeEEEEECCCCCEe
Confidence 9998874321111 1111 11222222223554 7889999999999999887765
No 231
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=99.10 E-value=7.8e-09 Score=90.11 Aligned_cols=226 Identities=11% Similarity=0.097 Sum_probs=143.4
Q ss_pred eEEEE-----eCCEEEEEeC-CCeEEEEeecCCCccccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeE
Q 047325 86 KAIVI-----SGEKIFTGHQ-DGKIRVWKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSC 159 (368)
Q Consensus 86 ~~~~~-----~~~~l~s~~~-dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 159 (368)
..+.+ +|++++.... +++|.+.|+.+.+........ .......
T Consensus 90 ~~~s~t~g~~DG~~lfVnd~~~~rVavIdl~t~~~~~ii~ip-------------------------------~g~~phg 138 (595)
T 1fwx_A 90 VHMSFTEGKYDGRFLFMNDKANTRVARVRCDVMKCDAILEIP-------------------------------NAKGIHG 138 (595)
T ss_dssp EEEEEETTEEEEEEEEEEETTTTEEEEEETTTTEEEEEEECS-------------------------------SCCSEEE
T ss_pred cccCCCCCCcCCCEEEEEcCCCCEEEEEECCCceEeeEEeCC-------------------------------CCCCCcc
Confidence 45555 4667766655 567999999987654322211 2244667
Q ss_pred EEE-c-CCCCEEEEEe------------------CCCcEEEEEccCCeEEEEeecCCCceEEEEeCCCC-eEEEEcCCC-
Q 047325 160 MSL-D-QDCGLLYTAS------------------WDRTFKVWRISDSKCLESVSAHDDAVNSVVSSSEG-LIFTGSADG- 217 (368)
Q Consensus 160 ~~~-~-~~~~~l~~~~------------------~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~dg- 217 (368)
+++ . |+++++++++ .++.+.+.|..+.+....+.-.. ....++.+|+| ++++.+.+.
T Consensus 139 ~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~vtvID~~t~~v~~qI~Vgg-~pd~~~~spdGk~~~vt~~~se 217 (595)
T 1fwx_A 139 LRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFTAVDADKWEVAWQVLVSG-NLDNCDADYEGKWAFSTSYNSE 217 (595)
T ss_dssp EEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEEEEEEEETTTTEEEEEEEESS-CCCCEEECSSSSEEEEEESCTT
T ss_pred eeeeecCCCcEEEEecccccccCCCCcccccccccCceEEEEECCCCeEEEEEEeCC-CccceEECCCCCEEEEEecCcc
Confidence 777 4 8899988885 24579999999999888887533 34667788988 666666442
Q ss_pred -------------------------------------eEEEEEcCCCCCCcccccceeeccccccEEEEEEcCCCCEEEE
Q 047325 218 -------------------------------------TVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSSSRSIVYC 260 (368)
Q Consensus 218 -------------------------------------~i~i~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~ 260 (368)
.|.+.|.+... .........-.....++.++|||+++++
T Consensus 218 ~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~i~~V~VID~~~~~----~~~~~~~Ipvg~~PhGv~~sPDGk~v~V 293 (595)
T 1fwx_A 218 KGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNGVKVVDGRKEA----SSLFTRYIPIANNPHGCNMAPDKKHLCV 293 (595)
T ss_dssp CCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETTEEEEECSGGG----CCSSEEEEEEESSCCCEEECTTSSEEEE
T ss_pred cCcchhhccccccceEEEeeccceeEeccCCCeeEECcEEEEeCcccC----CceeEEEEecCCCceEEEEcCCCCEEEE
Confidence 24555554310 0010111112234567899999997766
Q ss_pred ec-CCCcEEEEeCCCccc------------cceeeeccceEEEEEEeCCCEEEEeeCCCeEEEEecCCC--------cee
Q 047325 261 GS-SDGLVNFWEREKQLS------------HGGVLKGHKLAVLCLAAAGKLVFSGSADKTICVWRRDGA--------IHT 319 (368)
Q Consensus 261 ~~-~dg~i~i~d~~~~~~------------~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~--------~~~ 319 (368)
++ .+.+|.++|+.+.+. ......+....-++|+++|...++...|+.|.+||++.. ..+
T Consensus 294 ~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~vG~gP~h~aF~~dG~aY~t~~ldsqV~kwdi~~a~~~~~g~~~~~ 373 (595)
T 1fwx_A 294 AGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPELGLGPLHTAFDGRGNAYTSLFLDSQVVKWNIEDAIRAYAGEKVDP 373 (595)
T ss_dssp ECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECCBCCSCEEEEEECTTSEEEEEETTTTEEEEEEHHHHHHHHHTCSCCC
T ss_pred eCCCCCeEEEEECcccccccccccCcccceEEEcCCCCCcceEEECCCCeEEEEEecCCcEEEEEhhHhhhhhcccccce
Confidence 54 678999999986531 112222333444788899954556667999999998762 135
Q ss_pred eeEeeeccccCe-----eEEEEecCCeeeecCC
Q 047325 320 CLSVLTGHTGPV-----KCLAVEEDRDSSSSTS 347 (368)
Q Consensus 320 ~~~~~~~h~~~v-----~~l~~~~~~~~~~~~~ 347 (368)
.+..+..|..+- .++.++|||+++.+++
T Consensus 374 vi~kidV~yqpGh~~~~~g~t~~~DGk~l~~~N 406 (595)
T 1fwx_A 374 IKDKLDVHYQPGHLKTVMGETLDATNDWLVCLS 406 (595)
T ss_dssp EEEEEECSSCEEEEEETTTTSTTCCSSEEEEEE
T ss_pred eEEEeecccccccceeccceEeCCCCCEEEEcC
Confidence 666666665542 2335689999876654
No 232
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=99.10 E-value=1.3e-08 Score=86.46 Aligned_cols=219 Identities=7% Similarity=-0.025 Sum_probs=131.2
Q ss_pred CCEEEEEeCC-----CeEEEEeecCCCccccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcCCC
Q 047325 92 GEKIFTGHQD-----GKIRVWKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDC 166 (368)
Q Consensus 92 ~~~l~s~~~d-----g~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 166 (368)
++.+++.... +.|.++|..+.+.......+ ..+ .+.++||+
T Consensus 84 ~~~vyV~n~~~~~~~~~VsVID~~t~~vv~~I~vG--------------------------------~~P--gia~SpDg 129 (426)
T 3c75_H 84 ARRVYIQDPAHFAAITQQFVIDGSTGRILGMTDGG--------------------------------FLP--HPVAAEDG 129 (426)
T ss_dssp TTEEEEEECTTTCSSEEEEEEETTTTEEEEEEEEC--------------------------------SSC--EEEECTTS
T ss_pred CCEEEEECCCcCCCCCeEEEEECCCCEEEEEEECC--------------------------------CCC--ceEECCCC
Confidence 5666665543 69999999888754433321 223 79999999
Q ss_pred CEEEEEe----------CCCcEEEEEccCCeEEEEeecC-------CCceEEEEeCCCC-eEEEEcC--CCeEEEEEcCC
Q 047325 167 GLLYTAS----------WDRTFKVWRISDSKCLESVSAH-------DDAVNSVVSSSEG-LIFTGSA--DGTVKVWKREQ 226 (368)
Q Consensus 167 ~~l~~~~----------~d~~i~iwd~~~~~~~~~~~~~-------~~~v~~~~~~~~~-~l~~~~~--dg~i~i~d~~~ 226 (368)
++++++. .++.|.++|..+++.+..+.-. ......+.++|++ +++++.. ++.|.+.|+.+
T Consensus 130 k~lyVan~~~~~~~~G~~~~~VsviD~~t~~vv~~I~v~g~~r~~~g~~P~~~~~spDGk~lyV~n~~~~~~VsVID~~t 209 (426)
T 3c75_H 130 SFFAQASTVFERIARGKRTDYVEVFDPVTFLPIADIELPDAPRFLVGTYQWMNALTPDNKNLLFYQFSPAPAVGVVDLEG 209 (426)
T ss_dssp SCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGSEECTTSSEEEEEECSSSCEEEEEETTT
T ss_pred CEEEEEeccccccccCCCCCEEEEEECCCCcEEEEEECCCccccccCCCcceEEEcCCCCEEEEEecCCCCeEEEEECCC
Confidence 9888886 3678999999999998887632 1234578999999 7776653 68899999987
Q ss_pred CCCCccccccee--ec--c--------ccc----------cEE----------------EEEEcCCCCEEEEecCCCcEE
Q 047325 227 HGKGTKHSLAQT--LL--K--------QEC----------AVT----------------ALVVSSSRSIVYCGSSDGLVN 268 (368)
Q Consensus 227 ~~~~~~~~~~~~--~~--~--------~~~----------~i~----------------~~~~~~~~~~l~~~~~dg~i~ 268 (368)
............ .. + ..+ .+. .+.+.+++..++.....+.+.
T Consensus 210 ~kvv~~I~v~g~~~~~p~g~~~~v~~~~dG~~~~V~~~~~~v~~~~~~~~~v~~~p~~~~~~~~~dg~~~~~~s~~g~V~ 289 (426)
T 3c75_H 210 KTFDRMLDVPDCYHIFPASPTVFYMNCRDGSLARVDFADGETKVTNTEVFHTEDELLINHPAFSLRSGRLVWPTYTGKIF 289 (426)
T ss_dssp TEEEEEEECCSEEEEEEEETTEEEEEETTSSEEEEECCTTCCEEEECCCCSCTTSCBCSCCEECTTTCEEEEEBTTSEEE
T ss_pred CeEEEEEEcCCceeeccCCCcEEEEEcCCCCEEEEECCCCcEEEEeeeeeccCCCceeeEeeecCCCCEEEEEeCCCcEE
Confidence 532111110000 00 0 000 000 112344444444444556666
Q ss_pred EEeCCCccccc-ee------------eeccceEEEEEEeCCCEEEEeeC----------CCeEEEEecCCCceeeeEeee
Q 047325 269 FWEREKQLSHG-GV------------LKGHKLAVLCLAAAGKLVFSGSA----------DKTICVWRRDGAIHTCLSVLT 325 (368)
Q Consensus 269 i~d~~~~~~~~-~~------------~~~~~~~~~~~~~~~~~l~~~~~----------dg~i~iw~~~~~~~~~~~~~~ 325 (368)
+.|........ .. ........+.++++++.+++... ++.|.+.|..+. +.+.++.
T Consensus 290 ViD~~~~~~~v~~~~~~~~~~~i~~g~~p~g~~~va~s~dg~rlyVa~~~~~~gthk~~s~~VsVID~~T~--kvv~~I~ 367 (426)
T 3c75_H 290 QADLTAEGATFRAPIEALTEAERADDWRPGGWQQTAYHRQSDRIYLLVDQRDEWKHKAASRFVVVLNAETG--ERINKIE 367 (426)
T ss_dssp EEEECSSCEEECCCEESSCTTTGGGTEEECSSSCEEEEGGGTEEEEEEEECCTTCTTSCEEEEEEEETTTC--CEEEEEE
T ss_pred EEeccCCceEEeeeeeeccccccccccccCCceeeEEcCCCCEEEEEecccccccccCCCCEEEEEECCCC--eEEEEEE
Confidence 66664321100 00 00111112578888887776642 357999988776 5666664
Q ss_pred ccccCeeEEEEecCCe-eeecCC
Q 047325 326 GHTGPVKCLAVEEDRD-SSSSTS 347 (368)
Q Consensus 326 ~h~~~v~~l~~~~~~~-~~~~~~ 347 (368)
. ......++|+||++ .+.++.
T Consensus 368 v-g~~P~gia~spDg~~~lyv~n 389 (426)
T 3c75_H 368 L-GHEIDSINVSQDAEPLLYALS 389 (426)
T ss_dssp E-EEEECEEEECCSSSCEEEEEE
T ss_pred C-CCCcCeEEEccCCCEEEEEEc
Confidence 2 23588999999998 555443
No 233
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=99.06 E-value=4.8e-08 Score=81.70 Aligned_cols=240 Identities=9% Similarity=0.047 Sum_probs=138.7
Q ss_pred CcEEEEEecC--CEEEEcc--CCCcEEEEcCC-cceecc-------cCCCCCeeEEEEe-CCEEEEEeC------CCeEE
Q 047325 45 GHIYSLAASK--DLLYTGS--DSKNIRVWKNL-KEFCGF-------KASSGLVKAIVIS-GEKIFTGHQ------DGKIR 105 (368)
Q Consensus 45 ~~i~~~~~~~--~~l~s~~--~dg~i~iw~~~-~~~~~~-------~~~~~~v~~~~~~-~~~l~s~~~------dg~i~ 105 (368)
.....+++++ +++++.. .++.++||.+. ..+..+ ..+...+..++++ ...|+.... ++.|.
T Consensus 17 ~~p~~va~~~~g~~~v~~~~~~~~~~~l~~~~~g~~~~~p~~~~~~~~~~~~p~gv~~d~~g~L~v~D~g~~~~~~~~i~ 96 (343)
T 2qe8_A 17 LAPGNITLTPDGRLFLSLHQFYQPEMQVAELTQDGLIPFPPQSGNAIITFDTVLGIKSDGNGIVWMLDNGNQSKSVPKLV 96 (343)
T ss_dssp SCEEEEEECTTSCEEEEECGGGCCSCSEEEEETTEEEESCCCCSSCCCCCSCEEEEEECSSSEEEEEECHHHHTSCCEEE
T ss_pred CCcceEEECCCCCEEEEeCCCCCCceEEEEECCCCeecCCCcccCcccceeEeeEEEEcCCCcEEEEcCCCCcCCCCeEE
Confidence 6778888874 4666643 23435555442 222222 2345678999998 345555543 57899
Q ss_pred EEeecCCCccccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcCCCCEEEEE-e---CCCcEEEE
Q 047325 106 VWKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCGLLYTA-S---WDRTFKVW 181 (368)
Q Consensus 106 vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~---~d~~i~iw 181 (368)
+||+.+++........... ..+...+..+++++++..++.+ . .++.|.+|
T Consensus 97 ~~d~~tg~~~~~~~~~~~~--------------------------~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~ 150 (343)
T 2qe8_A 97 AWDTLNNQLSRVIYLPPPI--------------------------TLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRV 150 (343)
T ss_dssp EEETTTTEEEEEEECCTTT--------------------------SCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEE
T ss_pred EEECCCCeEEEEEECChhh--------------------------cccccccceEEEecCCCEEEEEcCccCCCCeEEEE
Confidence 9999877633222111000 0033456789999865555444 4 57899999
Q ss_pred EccCCeEEEEeecCC-----------------------------CceEEEEeCCCC-eEEEEcCCC-eEEEEEcCCCC--
Q 047325 182 RISDSKCLESVSAHD-----------------------------DAVNSVVSSSEG-LIFTGSADG-TVKVWKREQHG-- 228 (368)
Q Consensus 182 d~~~~~~~~~~~~~~-----------------------------~~v~~~~~~~~~-~l~~~~~dg-~i~i~d~~~~~-- 228 (368)
|+.+++....+..|. ..+..++++|++ .|+.+..++ .+..++.....
T Consensus 151 d~~~g~~~r~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~gia~s~dg~~ly~~~~~~~~l~~~~~~~~~~~ 230 (343)
T 2qe8_A 151 DLQTGLAARVLQGYPGIAPEDIDLVIDGVPVQIGQPDGTVIRPHLGVNGIVLDAENEWLYLSPMHSTSMYRIKSADLSNL 230 (343)
T ss_dssp ETTTCCEEEECTTCTTTSCCSCCCEETTEECBEECTTSCEECCCCCEEEEEECTTSCEEEEEESSCSEEEEEEHHHHTCT
T ss_pred ECCCCCEEEEecCCCcccccccceeECCEEEEeccCCCceeceecccceeEeccCCCEEEEEeCCCCeEEEEEHHHhcCC
Confidence 998887666553321 235789999999 677666555 55555542110
Q ss_pred CCcccccce--eeccccccEEEEEEcCCCCEEEEecCCCcEEEEeCCCccccceeeec-cc--eEEEEEEeCCCEEEEee
Q 047325 229 KGTKHSLAQ--TLLKQECAVTALVVSSSRSIVYCGSSDGLVNFWEREKQLSHGGVLKG-HK--LAVLCLAAAGKLVFSGS 303 (368)
Q Consensus 229 ~~~~~~~~~--~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~-~~--~~~~~~~~~~~~l~~~~ 303 (368)
......... ...++......++++++++++++...++.|.+||.+++... ..... +. ..-+++.+++.++++.+
T Consensus 231 ~~~~~~~~~~~~~~g~~g~pdgia~d~~G~l~va~~~~~~V~~~d~~~G~~~-~~~~~~~~~~p~~va~~~~g~l~v~~~ 309 (343)
T 2qe8_A 231 QLTDAELGSKIERYSEKPICDGISIDKDHNIYVGDLAHSAIGVITSADRAYK-LLVTDEKLSWTDSFNFGSDGYLYFDCN 309 (343)
T ss_dssp TCCHHHHHTTCEEEEECCSCSCEEECTTCCEEEEEGGGTEEEEEETTTTEEE-EEEECGGGSCEEEEEECTTSCEEEEEC
T ss_pred CCChhhhhcceEecccCCCCceEEECCCCCEEEEccCCCeEEEEECCCCCEE-EEEECCceecCCeeEECCCCcEEEEeC
Confidence 000000000 11122334567899999999999999999999998443321 12211 11 22355556777777766
Q ss_pred CCCeEEEE
Q 047325 304 ADKTICVW 311 (368)
Q Consensus 304 ~dg~i~iw 311 (368)
..+.+.+|
T Consensus 310 ~~~~~~~f 317 (343)
T 2qe8_A 310 QLHHSAPL 317 (343)
T ss_dssp CGGGSGGG
T ss_pred cccccccc
Confidence 55554444
No 234
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=99.06 E-value=5.7e-07 Score=72.24 Aligned_cols=217 Identities=7% Similarity=0.068 Sum_probs=129.5
Q ss_pred CCeeEEEEe--CCEEEEEe-CCCeEEEEeecCCCccccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeE
Q 047325 83 GLVKAIVIS--GEKIFTGH-QDGKIRVWKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSC 159 (368)
Q Consensus 83 ~~v~~~~~~--~~~l~s~~-~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 159 (368)
.....++++ ++.|+.+. .++.|..++++......... ........
T Consensus 36 ~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~--------------------------------~~~~~p~~ 83 (267)
T 1npe_A 36 KVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIR--------------------------------QDLGSPEG 83 (267)
T ss_dssp EEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEEC--------------------------------TTCCCEEE
T ss_pred CcEEEEEEecCCCEEEEEECCCCEEEEEecCCCCcEEEEE--------------------------------CCCCCccE
Confidence 346688887 45555544 57889999987543211000 01245678
Q ss_pred EEEcCCCCEEEEEe-CCCcEEEEEccCCeEEEEeecCCCceEEEEeCCC-CeEEEEcC---CCeEEEEEcCCCCCCcccc
Q 047325 160 MSLDQDCGLLYTAS-WDRTFKVWRISDSKCLESVSAHDDAVNSVVSSSE-GLIFTGSA---DGTVKVWKREQHGKGTKHS 234 (368)
Q Consensus 160 ~~~~~~~~~l~~~~-~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~-~~l~~~~~---dg~i~i~d~~~~~~~~~~~ 234 (368)
+++++++..|+.+. ..+.|.++++..................+++.|+ +.|+.+.. .+.|..+++..... .
T Consensus 84 ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~~~----~ 159 (267)
T 1npe_A 84 IALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNR----R 159 (267)
T ss_dssp EEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCC----E
T ss_pred EEEEecCCeEEEEECCCCEEEEEEcCCCCEEEEEECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCCCCc----E
Confidence 99999766555554 5678999998643322222222245688999995 55554443 46888888764311 1
Q ss_pred cceeeccccccEEEEEEcCCCCEEE-EecCCCcEEEEeCCCccccceeeeccceEEEEEEeCCCEEEEee-CCCeEEEEe
Q 047325 235 LAQTLLKQECAVTALVVSSSRSIVY-CGSSDGLVNFWEREKQLSHGGVLKGHKLAVLCLAAAGKLVFSGS-ADKTICVWR 312 (368)
Q Consensus 235 ~~~~~~~~~~~i~~~~~~~~~~~l~-~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~dg~i~iw~ 312 (368)
. ...........++++|++..|+ +-...+.|.++|....... .....-.. -..+++++..|+.+. .++.|.++|
T Consensus 160 ~--~~~~~~~~P~gia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~-~~~~~~~~-P~gi~~d~~~lyva~~~~~~v~~~d 235 (267)
T 1npe_A 160 I--LAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRR-KVLEGLQY-PFAVTSYGKNLYYTDWKTNSVIAMD 235 (267)
T ss_dssp E--EECTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEEEEE-EEEECCCS-EEEEEEETTEEEEEETTTTEEEEEE
T ss_pred E--EEECCCCCCcEEEEcCCCCEEEEEECCCCEEEEEecCCCceE-EEecCCCC-ceEEEEeCCEEEEEECCCCeEEEEe
Confidence 1 1112234578899999876554 4556688999998754322 12221111 134455556555554 568899998
Q ss_pred cCCCceeeeEeeeccc-cCeeEEEEecCCe
Q 047325 313 RDGAIHTCLSVLTGHT-GPVKCLAVEEDRD 341 (368)
Q Consensus 313 ~~~~~~~~~~~~~~h~-~~v~~l~~~~~~~ 341 (368)
.+++ +.+..+.... .....+++.|++.
T Consensus 236 ~~~g--~~~~~i~~g~~~~p~gi~~~~~~~ 263 (267)
T 1npe_A 236 LAIS--KEMDTFHPHKQTRLYGITIALSQC 263 (267)
T ss_dssp TTTT--EEEEEECCSSCCCCCCEEEECSCC
T ss_pred CCCC--CceEEEccccccccceeeecCccC
Confidence 8766 4555554332 2477888888875
No 235
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=99.05 E-value=1.8e-07 Score=78.78 Aligned_cols=183 Identities=8% Similarity=0.038 Sum_probs=117.7
Q ss_pred eEEEEcCCCCEEEEEeCC------CcEEEEEccCCeEEEEeecCCC---ceEEEEeCCCC-eEEEEc-------------
Q 047325 158 SCMSLDQDCGLLYTASWD------RTFKVWRISDSKCLESVSAHDD---AVNSVVSSSEG-LIFTGS------------- 214 (368)
Q Consensus 158 ~~~~~~~~~~~l~~~~~d------~~i~iwd~~~~~~~~~~~~~~~---~v~~~~~~~~~-~l~~~~------------- 214 (368)
..+...|++ .++++..+ +.|.++|..+++.+.++..... .-..+.|+|++ .+++..
T Consensus 141 h~~~~~pdG-i~Vs~~g~~~g~~~g~v~vlD~~T~~v~~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~ 219 (462)
T 2ece_A 141 HTVHCGPDA-IYISALGNEEGEGPGGILMLDHYSFEPLGKWEIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKL 219 (462)
T ss_dssp EEEEECSSC-EEEEEEEETTSCSCCEEEEECTTTCCEEEECCSBCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCT
T ss_pred cceeECCCe-EEEEcCCCcCCCCCCeEEEEECCCCeEEEEEccCCCCccccceEEECCCCCEEEEccCcCccccccccch
Confidence 456778998 66666655 7899999999999998873322 23457789988 666653
Q ss_pred ------CCCeEEEEEcCCCCCCcccccceeecc--ccccEEEEEE--cCCCCEEEEecC------CCcEEEEeCCCcccc
Q 047325 215 ------ADGTVKVWKREQHGKGTKHSLAQTLLK--QECAVTALVV--SSSRSIVYCGSS------DGLVNFWEREKQLSH 278 (368)
Q Consensus 215 ------~dg~i~i~d~~~~~~~~~~~~~~~~~~--~~~~i~~~~~--~~~~~~l~~~~~------dg~i~i~d~~~~~~~ 278 (368)
.+.+|.+||+... +....+.. .......+.| +|++++++++++ +++|.+|....+...
T Consensus 220 ~~~~~~~~d~V~v~D~~~~------k~~~tI~vg~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~ 293 (462)
T 2ece_A 220 EHLKDRYGNRIHFWDLRKR------KRIHSLTLGEENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWN 293 (462)
T ss_dssp TTHHHHSCCEEEEEETTTT------EEEEEEESCTTEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEE
T ss_pred hhhhhccCCEEEEEECCCC------cEeeEEecCCCCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCcee
Confidence 3789999999864 22333322 2234455555 999998888774 557776554322100
Q ss_pred c-e-----------eee---------ccceEEEEEEeCCCEEEEeeC-CCeEEEEecC-CCceeeeEeeeccc-------
Q 047325 279 G-G-----------VLK---------GHKLAVLCLAAAGKLVFSGSA-DKTICVWRRD-GAIHTCLSVLTGHT------- 328 (368)
Q Consensus 279 ~-~-----------~~~---------~~~~~~~~~~~~~~~l~~~~~-dg~i~iw~~~-~~~~~~~~~~~~h~------- 328 (368)
. . .+. +....-+.+++|+++|+++.. .+.|.+||+. ....+.+..+....
T Consensus 294 ~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~I~lS~DGrfLYVSnrg~d~VavfdV~d~~~~~lv~~I~tGG~~~~~~~ 373 (462)
T 2ece_A 294 AEKVIEIPAEPLEGNLPEILKPFKAVPPLVTDIDISLDDKFLYLSLWGIGEVRQYDISNPFKPVLTGKVKLGGIFHRADH 373 (462)
T ss_dssp EEEEEEECCEECCSSCCGGGGGGTEECCCCCCEEECTTSCEEEEEETTTTEEEEEECSSTTSCEEEEEEECBTTTTCBCC
T ss_pred EEEEEeCCCccccccccccccccccCCCceeEEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEEEEeCCeeccccc
Confidence 0 0 000 111233668899998887765 7899999985 33344554443221
Q ss_pred -------cCeeEEEEecCCeeeecCC
Q 047325 329 -------GPVKCLAVEEDRDSSSSTS 347 (368)
Q Consensus 329 -------~~v~~l~~~~~~~~~~~~~ 347 (368)
+....++++|||+.+..++
T Consensus 374 ~~G~~~~ggPr~~~lSpDGk~LyVaN 399 (462)
T 2ece_A 374 PAGHKLTGAPQMLEISRDGRRVYVTN 399 (462)
T ss_dssp TTSCCCCSCCCCEEECTTSSEEEEEC
T ss_pred cccccCCCCCCEEEEcCCCCEEEEEc
Confidence 1368899999999776655
No 236
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=99.02 E-value=2.1e-08 Score=83.78 Aligned_cols=236 Identities=9% Similarity=0.001 Sum_probs=133.8
Q ss_pred cEEEEcCCcc--eecccCCCCCeeEEEEe--CCEEEEEe----------CCCeEEEEeecCCCccccccCCccccceeee
Q 047325 65 NIRVWKNLKE--FCGFKASSGLVKAIVIS--GEKIFTGH----------QDGKIRVWKISPKNQSVHKRAGTLPTLKDIF 130 (368)
Q Consensus 65 ~i~iw~~~~~--~~~~~~~~~~v~~~~~~--~~~l~s~~----------~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~ 130 (368)
+|.+.|..+. +..+..-..+ .+.++ +++++++. .++.|.+||+.+.+.......+.....
T Consensus 47 ~vsvID~~t~~v~~~i~vG~~P--~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v~~~~~~---- 120 (368)
T 1mda_H 47 ENWVSCAGCGVTLGHSLGAFLS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRF---- 120 (368)
T ss_dssp EEEEEETTTTEEEEEEEECTTC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSC----
T ss_pred eEEEEECCCCeEEEEEeCCCCC--ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEECCCcccc----
Confidence 7889997643 3344333344 57776 77777775 478999999999876544332100000
Q ss_pred eccCCCCceeEecccceeeeeecCCCEeEEEEcCCCCEEEEEeC--CCcEEE--EEccCCeEEEEeecCCCc-e------
Q 047325 131 KSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCGLLYTASW--DRTFKV--WRISDSKCLESVSAHDDA-V------ 199 (368)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~--d~~i~i--wd~~~~~~~~~~~~~~~~-v------ 199 (368)
. .......++++||+++++++.. +..+.+ +|+.+ +..+...... +
T Consensus 121 -------------------~--~g~~P~~ia~SpDGk~lyVan~~~~~~v~V~~iD~~t---v~~i~v~~~~~~~p~g~~ 176 (368)
T 1mda_H 121 -------------------S--VGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASD---DQLTKSASCFHIHPGAAA 176 (368)
T ss_dssp -------------------C--BSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEE---EEEEECSSCCCCEEEETT
T ss_pred -------------------c--cCCCcceEEEcCCCCEEEEEccCCCCeEEEEEEchhh---ceEEECCCceEEccCCCe
Confidence 0 0122346899999999998875 356888 88866 3333211000 0
Q ss_pred EEEEeCCCC--------------------------------------eEEEEcCCCeEEEEEcCCCCCCcccccceeecc
Q 047325 200 NSVVSSSEG--------------------------------------LIFTGSADGTVKVWKREQHGKGTKHSLAQTLLK 241 (368)
Q Consensus 200 ~~~~~~~~~--------------------------------------~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~ 241 (368)
.-+..++++ .++..+. +.+.+.|...... .....+..
T Consensus 177 ~~~~~~~dg~~~~vd~~~~~~~~~~v~~~~t~~i~vg~~P~~~~~~~~~~~vs~-~~V~viD~~~~~~----~v~~~~~~ 251 (368)
T 1mda_H 177 THYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAAQANYPGMLVWAVA-SSILQGDIPAAGA----TMKAAIDG 251 (368)
T ss_dssp EEECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCEEETTTTEEEECBS-SCCEEEECCSSCC----EEECCCCS
T ss_pred EEEEEcCCCCEEEEECccccccCCeEEEEeeeeeeCCCCccccccCCEEEEEcC-CEEEEEECCCCcc----eEEEEEEe
Confidence 001111111 2222222 4455555432110 00000000
Q ss_pred ----------ccccEEEEEEcCCCCEEEEecC---------CCcEEEEeCCCccccceeeeccceEEEEEEeCCC-EEEE
Q 047325 242 ----------QECAVTALVVSSSRSIVYCGSS---------DGLVNFWEREKQLSHGGVLKGHKLAVLCLAAAGK-LVFS 301 (368)
Q Consensus 242 ----------~~~~i~~~~~~~~~~~l~~~~~---------dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~ 301 (368)
.......++++|+++.++.+.. ++.+.++|+.+.+.......+....-+.+++|++ ++++
T Consensus 252 ~~~~~~~~~~~p~g~~~v~~s~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~vv~~i~vg~~p~gi~~s~Dg~~l~va 331 (368)
T 1mda_H 252 NESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISNGHDSDAIIAAQDGASDNYA 331 (368)
T ss_dssp SCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCEEEEEECEEEECCSSSCEEEE
T ss_pred ccccccccccccCcceeeEEcCCCCEEEEEeccccCcccccCCCEEEEECCCCeEEEEEECCCCcceEEECCCCCEEEEE
Confidence 0111112679999998886543 2356799999887765555555555578889987 5666
Q ss_pred ee-CCCeEEEEecCCCceeeeEeeeccccCeeEEEEec
Q 047325 302 GS-ADKTICVWRRDGAIHTCLSVLTGHTGPVKCLAVEE 338 (368)
Q Consensus 302 ~~-~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~l~~~~ 338 (368)
.. .++.|.++|+.+. +.+.++.... ....+++.+
T Consensus 332 ~~~~~~~VsVID~~t~--kvv~~I~vg~-~P~~i~~~~ 366 (368)
T 1mda_H 332 NSAGTEVLDIYDAASD--QDQSSVELDK-GPESLSVQN 366 (368)
T ss_dssp EETTTTEEEEEESSSC--EEEEECCCCS-CCCEEECCC
T ss_pred ccCCCCeEEEEECCCC--cEEEEEECCC-CCCEEEeec
Confidence 66 5999999999886 6677776443 345666554
No 237
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=98.98 E-value=4.4e-06 Score=78.12 Aligned_cols=278 Identities=10% Similarity=0.168 Sum_probs=162.3
Q ss_pred CCcEEEEEecCC-EEEEccCCCcEEEEcCCcc-eeccc--------CCCCCeeEEEEe-CCEEEEEeCCCeEEEEeecCC
Q 047325 44 EGHIYSLAASKD-LLYTGSDSKNIRVWKNLKE-FCGFK--------ASSGLVKAIVIS-GEKIFTGHQDGKIRVWKISPK 112 (368)
Q Consensus 44 ~~~i~~~~~~~~-~l~s~~~dg~i~iw~~~~~-~~~~~--------~~~~~v~~~~~~-~~~l~s~~~dg~i~vw~~~~~ 112 (368)
...|.++..+.+ .|..|+.++-+..||..+. ...+. .....|.++..+ ...|..|+.+ -|.+|+..++
T Consensus 214 ~~~i~~i~~d~~g~lwigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWigt~~-Gl~~~~~~~~ 292 (795)
T 4a2l_A 214 TKQIQAILQQSPTRIWVATEGAGLFLINPKTKEIKNYLHSPSNPKSISSNYIRSLAMDSQNRLWIGTFN-DLNIYHEGTD 292 (795)
T ss_dssp CCCEEEEEEEETTEEEEEEBSSCEEEEETTTTEEEEECCCTTCTTSCSCSBEEEEEECTTSCEEEEESS-CEEEEETTTT
T ss_pred CCeeEEEEEcCCCCEEEEECCCCeEEEeCCCCeEEEeecCCCCccccCCCeEEEEEEcCCCCEEEEeCC-hhheEcCCCC
Confidence 456788877533 5555654444888887643 22222 124568898887 5567777766 5778887655
Q ss_pred CccccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcCCCCEEEEEeCCCcEEEEEccCCeEEEEe
Q 047325 113 NQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCGLLYTASWDRTFKVWRISDSKCLESV 192 (368)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~ 192 (368)
............. .-....|.++...++|. |..|+.++-|..++..+++.....
T Consensus 293 ~~~~~~~~~~~~~-------------------------~l~~~~i~~i~~D~~g~-lWigt~~~Gl~~~~~~~~~~~~~~ 346 (795)
T 4a2l_A 293 SFASYSSNPVENG-------------------------SLSQRSVRSIFMDSQGG-MWLGTYFGGLNYYHPIRNRFKNIR 346 (795)
T ss_dssp EEEEECCCTTSTT-------------------------SCSSSCEEEEEECTTSC-EEEEESSSCEEEECGGGGSSEEEC
T ss_pred eEEEEecCCCCCC-------------------------CCCCCcEEEEEEeCCcC-EEEEECCCCeEEeCCCcccceEEc
Confidence 4221111000000 00346799999998876 566777778999987655432211
Q ss_pred e------cCCCceEEEEeCCCCeEEEEcCCCeEEEEEcCCCCCCcccccce-e-e-ccccccEEEEEEcCCCCEEEEecC
Q 047325 193 S------AHDDAVNSVVSSSEGLIFTGSADGTVKVWKREQHGKGTKHSLAQ-T-L-LKQECAVTALVVSSSRSIVYCGSS 263 (368)
Q Consensus 193 ~------~~~~~v~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~-~-~-~~~~~~i~~~~~~~~~~~l~~~~~ 263 (368)
. -....|.++...+++.|..|+.++.|..||.....- ....... . . ......|.++...++++.|..|+.
T Consensus 347 ~~~~~~~l~~~~V~~i~~d~~g~lWiGt~~~Gl~~~~~~~~~~-~~~~~~~~~~~~~l~~~~v~~i~~d~~g~~lWigt~ 425 (795)
T 4a2l_A 347 NIPYKNSLSDNVVSCIVEDKDKNLWIGTNDGGLNLYNPITQRF-TSYTLQEDESARGIGSNNIKAVYVDEKKSLVYIGTH 425 (795)
T ss_dssp CCTTSSSCSCSSEEEEEECTTSCEEEEESSSCEEEECTTTCCE-EEECCC------CCSCSCEEEEEEETTTTEEEEEET
T ss_pred CCCCCCCCCCCeeEEEEECCCCCEEEEECCCCeEEEcCCCCcE-EEEecCCCCcccCCCCccEEEEEEcCCCCEEEEEeC
Confidence 1 124568999999889888899888899999865311 0000000 0 0 012356899999888885777777
Q ss_pred CCcEEEEeCCCccccceee---eccceEEEEEEeC-CCEEEEeeCCCeEEEEecCCCceeeeEee----eccccCeeEEE
Q 047325 264 DGLVNFWEREKQLSHGGVL---KGHKLAVLCLAAA-GKLVFSGSADKTICVWRRDGAIHTCLSVL----TGHTGPVKCLA 335 (368)
Q Consensus 264 dg~i~i~d~~~~~~~~~~~---~~~~~~~~~~~~~-~~~l~~~~~dg~i~iw~~~~~~~~~~~~~----~~h~~~v~~l~ 335 (368)
++-|..||.+++....... ......+.++..+ ...|..|+.+ -|.+|+..+......... .-....|.++.
T Consensus 426 ~~Gl~~~d~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lwigt~~-Gl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~ 504 (795)
T 4a2l_A 426 AGGLSILHRNSGQVENFNQRNSQLVNENVYAILPDGEGNLWLGTLS-ALVRFNPEQRSFTTIEKEKDGTPVVSKQITTLF 504 (795)
T ss_dssp TTEEEEEETTTCCEEEECTTTSCCSCSCEEEEEECSSSCEEEEESS-CEEEEETTTTEEEECCBCTTCCBCCCCCEEEEE
T ss_pred cCceeEEeCCCCcEEEeecCCCCcCCCeeEEEEECCCCCEEEEecC-ceeEEeCCCCeEEEccccccccccCCceEEEEE
Confidence 7779999987653221110 0123456666664 2334445554 488888766532222111 11235688998
Q ss_pred EecCCeeeecCCcce
Q 047325 336 VEEDRDSSSSTSSCA 350 (368)
Q Consensus 336 ~~~~~~~~~~~~~~~ 350 (368)
..++|.+.++..+..
T Consensus 505 ~d~~g~lWigt~~Gl 519 (795)
T 4a2l_A 505 RDSHKRLWIGGEEGL 519 (795)
T ss_dssp ECTTCCEEEEESSCE
T ss_pred ECCCCCEEEEeCCce
Confidence 888887544333333
No 238
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=98.97 E-value=2.2e-07 Score=73.43 Aligned_cols=187 Identities=8% Similarity=-0.017 Sum_probs=116.2
Q ss_pred CEeEEEEcCCCCEEEEEeC--CCcEEEEEccCCeEEEEeecCCC-ceEEEEeCCCCeEEEEcCCCeEEEEEcCCCCCCcc
Q 047325 156 AVSCMSLDQDCGLLYTASW--DRTFKVWRISDSKCLESVSAHDD-AVNSVVSSSEGLIFTGSADGTVKVWKREQHGKGTK 232 (368)
Q Consensus 156 ~v~~~~~~~~~~~l~~~~~--d~~i~iwd~~~~~~~~~~~~~~~-~v~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~ 232 (368)
....+.|++++.++++.+. ++.|.++|+.+++.+..+.-... ....+++..+...++.-.++.+.++|..+..
T Consensus 22 f~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~g~~lyv~t~~~~~v~viD~~t~~---- 97 (266)
T 2iwa_A 22 FTQGLVYAENDTLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFGEGLTLLNEKLYQVVWLKNIGFIYDRRTLS---- 97 (266)
T ss_dssp CEEEEEECSTTEEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCEEEEEEETTEEEEEETTCSEEEEEETTTTE----
T ss_pred CcccEEEeCCCeEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcceEEEEEeCCEEEEEEecCCEEEEEECCCCc----
Confidence 3578999998644444443 57999999999999988763222 2334555543355555678999999997652
Q ss_pred cccceeeccc-cccEEEEEEcCCCCEEEEecCCCcEEEEeCCCccccceeeecc-ce-----EEEEEEeCCCEEEEeeCC
Q 047325 233 HSLAQTLLKQ-ECAVTALVVSSSRSIVYCGSSDGLVNFWEREKQLSHGGVLKGH-KL-----AVLCLAAAGKLVFSGSAD 305 (368)
Q Consensus 233 ~~~~~~~~~~-~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~-~~-----~~~~~~~~~~~l~~~~~d 305 (368)
....+... .. ...++++++.++++..++.|.++|.++.+.......+. .. .-+.+. ++.+.+....+
T Consensus 98 --v~~~i~~g~~~---g~glt~Dg~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~nele~~-dg~lyvn~~~~ 171 (266)
T 2iwa_A 98 --NIKNFTHQMKD---GWGLATDGKILYGSDGTSILYEIDPHTFKLIKKHNVKYNGHRVIRLNELEYI-NGEVWANIWQT 171 (266)
T ss_dssp --EEEEEECCSSS---CCEEEECSSSEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTS
T ss_pred --EEEEEECCCCC---eEEEEECCCEEEEECCCCeEEEEECCCCcEEEEEEECCCCcccccceeEEEE-CCEEEEecCCC
Confidence 23333211 11 12345577877777788999999998866554433221 11 123333 66555555567
Q ss_pred CeEEEEecCCCceeeeEeeecc-------------ccCeeEEEEecCCee-eecCCcceEEEE
Q 047325 306 KTICVWRRDGAIHTCLSVLTGH-------------TGPVKCLAVEEDRDS-SSSTSSCAQRWI 354 (368)
Q Consensus 306 g~i~iw~~~~~~~~~~~~~~~h-------------~~~v~~l~~~~~~~~-~~~~~~~~~~w~ 354 (368)
+.|.+-|..++ +.+..+.-. ....+.|+|+|++.. ++++....+++.
T Consensus 172 ~~V~vID~~tg--~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~ 232 (266)
T 2iwa_A 172 DCIARISAKDG--TLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWPKLFE 232 (266)
T ss_dssp SEEEEEETTTC--CEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCSEEEE
T ss_pred CeEEEEECCCC--cEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCCCCeEEE
Confidence 89999998876 455555321 135689999999864 333334444443
No 239
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=98.97 E-value=8.3e-09 Score=86.22 Aligned_cols=193 Identities=5% Similarity=-0.058 Sum_probs=113.0
Q ss_pred EEEEcCCCCEEEEEe----------CCCcEEEEEccCCeEEEEeecCC-------CceEEEEeCCCC-eEEEEcC--CCe
Q 047325 159 CMSLDQDCGLLYTAS----------WDRTFKVWRISDSKCLESVSAHD-------DAVNSVVSSSEG-LIFTGSA--DGT 218 (368)
Q Consensus 159 ~~~~~~~~~~l~~~~----------~d~~i~iwd~~~~~~~~~~~~~~-------~~v~~~~~~~~~-~l~~~~~--dg~ 218 (368)
.+.++||+++++++. .++.|.+||+.+++.+.++..+. .....+.++||| +++++.. +..
T Consensus 69 ~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v~~~~~~~~g~~P~~ia~SpDGk~lyVan~~~~~~ 148 (368)
T 1mda_H 69 LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAA 148 (368)
T ss_dssp EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSCCTTSEEECTTSSCEEEEECSSSCE
T ss_pred ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEECCCccccccCCCcceEEEcCCCCEEEEEccCCCCe
Confidence 799999999998886 36889999999999999987441 235678999999 7777654 467
Q ss_pred EEE--EEcCCCCCCccccc---ceeecc---------ccccEEEEE--------------------------EcCCCCEE
Q 047325 219 VKV--WKREQHGKGTKHSL---AQTLLK---------QECAVTALV--------------------------VSSSRSIV 258 (368)
Q Consensus 219 i~i--~d~~~~~~~~~~~~---~~~~~~---------~~~~i~~~~--------------------------~~~~~~~l 258 (368)
+.+ +|..+. ..... ...... ..+.+..+. ..+++..+
T Consensus 149 v~V~~iD~~tv---~~i~v~~~~~~~p~g~~~~~~~~~dg~~~~vd~~~~~~~~~~v~~~~t~~i~vg~~P~~~~~~~~~ 225 (368)
T 1mda_H 149 AGLSVPGASDD---QLTKSASCFHIHPGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAAQANYPGML 225 (368)
T ss_dssp EEEEETTTEEE---EEEECSSCCCCEEEETTEEECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCEEETTTTEE
T ss_pred EEEEEEchhhc---eEEECCCceEEccCCCeEEEEEcCCCCEEEEECccccccCCeEEEEeeeeeeCCCCccccccCCEE
Confidence 888 887530 00000 000000 000000000 13344444
Q ss_pred EEecCCCcEEEEeCCCccc-ccee------------eeccceEEEEEEeCCCEEEEeeC---------CCeEEEEecCCC
Q 047325 259 YCGSSDGLVNFWEREKQLS-HGGV------------LKGHKLAVLCLAAAGKLVFSGSA---------DKTICVWRRDGA 316 (368)
Q Consensus 259 ~~~~~dg~i~i~d~~~~~~-~~~~------------~~~~~~~~~~~~~~~~~l~~~~~---------dg~i~iw~~~~~ 316 (368)
+..+. +.+.+.|...... .... ........+.++++++.++.+.. ++.+.++|+.+.
T Consensus 226 ~~vs~-~~V~viD~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~v~~s~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~ 304 (368)
T 1mda_H 226 VWAVA-SSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVG 304 (368)
T ss_dssp EECBS-SCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSC
T ss_pred EEEcC-CEEEEEECCCCcceEEEEEEeccccccccccccCcceeeEEcCCCCEEEEEeccccCcccccCCCEEEEECCCC
Confidence 44445 7788888754211 0000 01111122578999988887543 235669998876
Q ss_pred ceeeeEeeeccccCeeEEEEecCCeee-ecC---CcceEEEEEeeC
Q 047325 317 IHTCLSVLTGHTGPVKCLAVEEDRDSS-SST---SSCAQRWIVYSG 358 (368)
Q Consensus 317 ~~~~~~~~~~h~~~v~~l~~~~~~~~~-~~~---~~~~~~w~l~sg 358 (368)
+.+..+.... ....|+|+||++.+ .+. ++.+.++.+.++
T Consensus 305 --~vv~~i~vg~-~p~gi~~s~Dg~~l~va~~~~~~~VsVID~~t~ 347 (368)
T 1mda_H 305 --QTSGPISNGH-DSDAIIAAQDGASDNYANSAGTEVLDIYDAASD 347 (368)
T ss_dssp --CEEECCEEEE-EECEEEECCSSSCEEEEEETTTTEEEEEESSSC
T ss_pred --eEEEEEECCC-CcceEEECCCCCEEEEEccCCCCeEEEEECCCC
Confidence 5566665333 68899999999742 222 334554444443
No 240
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=98.97 E-value=5e-06 Score=77.73 Aligned_cols=269 Identities=13% Similarity=0.190 Sum_probs=161.7
Q ss_pred CcEEEEEecCC-EEEEccCCCcEEEEcCCcc-eeccc-------CCCCCeeEEEEe-CCEEEEEeCCCeEEEEeecCCCc
Q 047325 45 GHIYSLAASKD-LLYTGSDSKNIRVWKNLKE-FCGFK-------ASSGLVKAIVIS-GEKIFTGHQDGKIRVWKISPKNQ 114 (368)
Q Consensus 45 ~~i~~~~~~~~-~l~s~~~dg~i~iw~~~~~-~~~~~-------~~~~~v~~~~~~-~~~l~s~~~dg~i~vw~~~~~~~ 114 (368)
..|.++..+.+ .|..|+.++-|..++.... ...+. .....|.++..+ ...|..|+.++-|..|+..++..
T Consensus 310 ~~i~~i~~D~~g~lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~l~~~~V~~i~~d~~g~lWiGt~~~Gl~~~~~~~~~~ 389 (795)
T 4a2l_A 310 RSVRSIFMDSQGGMWLGTYFGGLNYYHPIRNRFKNIRNIPYKNSLSDNVVSCIVEDKDKNLWIGTNDGGLNLYNPITQRF 389 (795)
T ss_dssp SCEEEEEECTTSCEEEEESSSCEEEECGGGGSSEEECCCTTSSSCSCSSEEEEEECTTSCEEEEESSSCEEEECTTTCCE
T ss_pred CcEEEEEEeCCcCEEEEECCCCeEEeCCCcccceEEcCCCCCCCCCCCeeEEEEECCCCCEEEEECCCCeEEEcCCCCcE
Confidence 56888888755 6777887777888876532 22221 134568899887 55788888887888898776542
Q ss_pred cccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcCCCCEEEEEeCCCcEEEEEccCCeEEEEee-
Q 047325 115 SVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCGLLYTASWDRTFKVWRISDSKCLESVS- 193 (368)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~- 193 (368)
.........+. ..-....|.++...+++..|..|+.++-|..+|..+++......
T Consensus 390 ~~~~~~~~~~~------------------------~~l~~~~v~~i~~d~~g~~lWigt~~~Gl~~~d~~~~~~~~~~~~ 445 (795)
T 4a2l_A 390 TSYTLQEDESA------------------------RGIGSNNIKAVYVDEKKSLVYIGTHAGGLSILHRNSGQVENFNQR 445 (795)
T ss_dssp EEECCC------------------------------CCSCSCEEEEEEETTTTEEEEEETTTEEEEEETTTCCEEEECTT
T ss_pred EEEecCCCCcc------------------------cCCCCccEEEEEEcCCCCEEEEEeCcCceeEEeCCCCcEEEeecC
Confidence 21111000000 00024578999998888757778877789999998776443221
Q ss_pred ---cCCCceEEEEeCCCCeEEEEcCCCeEEEEEcCCCCCCcccccceee----ccccccEEEEEEcCCCCEEEEecCCCc
Q 047325 194 ---AHDDAVNSVVSSSEGLIFTGSADGTVKVWKREQHGKGTKHSLAQTL----LKQECAVTALVVSSSRSIVYCGSSDGL 266 (368)
Q Consensus 194 ---~~~~~v~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~----~~~~~~i~~~~~~~~~~~l~~~~~dg~ 266 (368)
.....|.++...+++.|..|+. +.+.+||.....- ...... ......|.++...+++++.+.. .+ -
T Consensus 446 ~~~l~~~~v~~i~~d~~g~lwigt~-~Gl~~~~~~~~~~----~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt-~~-G 518 (795)
T 4a2l_A 446 NSQLVNENVYAILPDGEGNLWLGTL-SALVRFNPEQRSF----TTIEKEKDGTPVVSKQITTLFRDSHKRLWIGG-EE-G 518 (795)
T ss_dssp TSCCSCSCEEEEEECSSSCEEEEES-SCEEEEETTTTEE----EECCBCTTCCBCCCCCEEEEEECTTCCEEEEE-SS-C
T ss_pred CCCcCCCeeEEEEECCCCCEEEEec-CceeEEeCCCCeE----EEccccccccccCCceEEEEEECCCCCEEEEe-CC-c
Confidence 1345789999888886666666 5588899765311 001000 1123568999999888765554 44 4
Q ss_pred EEEEeCCCcccccee-----eeccceEEEEEEeC--CCEEEEeeCCCeEEEEecCCCceeeeEeeec-cccCeeEEEEec
Q 047325 267 VNFWEREKQLSHGGV-----LKGHKLAVLCLAAA--GKLVFSGSADKTICVWRRDGAIHTCLSVLTG-HTGPVKCLAVEE 338 (368)
Q Consensus 267 i~i~d~~~~~~~~~~-----~~~~~~~~~~~~~~--~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~-h~~~v~~l~~~~ 338 (368)
+..||..+... ... .......+.++..+ +. |..|+.. -|..||..+..........+ ....|.++...+
T Consensus 519 l~~~~~~~~~~-~~~~~~~~~~l~~~~i~~i~~d~~g~-lWigT~~-Gl~~~d~~~~~~~~~~~~~gl~~~~i~~i~~d~ 595 (795)
T 4a2l_A 519 LSVFKQEGLDI-QKASILPVSNVTKLFTNCIYEASNGI-IWVGTRE-GFYCFNEKDKQIKRYNTTNGLPNNVVYGILEDS 595 (795)
T ss_dssp EEEEEEETTEE-EECCCSCSCGGGGSCEEEEEECTTSC-EEEEESS-CEEEEETTTTEEEEECGGGTCSCSCEEEEEECT
T ss_pred eEEEeCCCCeE-EEecCCCCCCCCCCeeEEEEECCCCC-EEEEeCC-CceeECCCCCcEEEeCCCCCCchhheEEEEECC
Confidence 88888765433 110 01223456677664 54 4445544 57888876653222211111 134588888888
Q ss_pred CCeeeecCC
Q 047325 339 DRDSSSSTS 347 (368)
Q Consensus 339 ~~~~~~~~~ 347 (368)
+|.+-+++.
T Consensus 596 ~g~lWi~t~ 604 (795)
T 4a2l_A 596 FGRLWLSTN 604 (795)
T ss_dssp TSCEEEEET
T ss_pred CCCEEEEcC
Confidence 887554444
No 241
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=98.96 E-value=2.5e-07 Score=84.27 Aligned_cols=282 Identities=15% Similarity=0.149 Sum_probs=156.3
Q ss_pred ecCCEEEEccCCCcEEEEcCCccee--cccCC----CCCee-EEEEeCCEEEEEeC------CCeEEEEeecCCCccccc
Q 047325 52 ASKDLLYTGSDSKNIRVWKNLKEFC--GFKAS----SGLVK-AIVISGEKIFTGHQ------DGKIRVWKISPKNQSVHK 118 (368)
Q Consensus 52 ~~~~~l~s~~~dg~i~iw~~~~~~~--~~~~~----~~~v~-~~~~~~~~l~s~~~------dg~i~vw~~~~~~~~~~~ 118 (368)
+.++.++.++.|+.|..+|..+... .+... ...+. +-...++.++.+.. +|.|..+|..+++.....
T Consensus 115 ~~~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~P~v~~~~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~ 194 (668)
T 1kv9_A 115 LWGDKVYVGTLDGRLIALDAKTGKAIWSQQTTDPAKPYSITGAPRVVKGKVIIGNGGAEYGVRGFVSAYDADTGKLAWRF 194 (668)
T ss_dssp EEBTEEEEECTTSEEEEEETTTCCEEEEEECSCTTSSCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEE
T ss_pred EECCEEEEEcCCCEEEEEECCCCCEeeeeccCCCCCcceecCCCEEECCEEEEeCCCCCcCCCCEEEEEECCCCcEEEEe
Confidence 3455788888899999999764422 22211 01111 11233666666654 589999999999876654
Q ss_pred cCCc-cccceeeeeccCCCCceeE-e--ccc-ceeeeeecCCCEeEEEEcCCCCEEEEEeCCC-----------------
Q 047325 119 RAGT-LPTLKDIFKSSIKPSNYIE-V--RRH-RTALWIRHSDAVSCMSLDQDCGLLYTASWDR----------------- 176 (368)
Q Consensus 119 ~~~~-~~~~~~~~~~~~~~~~~~~-~--~~~-~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~----------------- 176 (368)
.... .+.... ....... . ... ..-...+.......+++.|+..+++.+..++
T Consensus 195 ~~~~~~p~~~~------~~~~~~~~~~~~~g~~~w~~~~gg~~w~~~a~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~l~ 268 (668)
T 1kv9_A 195 YTVPGDPALPY------EHPELREAAKTWQGDQYWKLGGGGTVWDSMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLY 268 (668)
T ss_dssp ESSCCCTTSCC------SSHHHHHHHTTCCSSCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTT
T ss_pred cccCCCCCccc------cccccccccccCCccceeeeCCCCccccceEEcCCCCEEEEeCCCCCccccCCCCCCCCCcee
Confidence 4211 000000 0000000 0 000 0000001223334578888888888887766
Q ss_pred --cEEEEEccCCeEEEEeec--CC-------CceEEEEeCCCC----eEEEEcCCCeEEEEEcCCCCCCcccccce----
Q 047325 177 --TFKVWRISDSKCLESVSA--HD-------DAVNSVVSSSEG----LIFTGSADGTVKVWKREQHGKGTKHSLAQ---- 237 (368)
Q Consensus 177 --~i~iwd~~~~~~~~~~~~--~~-------~~v~~~~~~~~~----~l~~~~~dg~i~i~d~~~~~~~~~~~~~~---- 237 (368)
.|..+|..+|+.+-.++. |. .+.....+..++ .++.++.+|.++++|.++++.........
T Consensus 269 ~~~v~AlD~~tG~~~W~~~~~~~~~wd~~~~~~~~~~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~ 348 (668)
T 1kv9_A 269 LSSILAIRPDTGKLAWHYQVTPGDSWDFTATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKLISAEKFGKVTWA 348 (668)
T ss_dssp TTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCCSE
T ss_pred eeeEEEEcCCCCceeeEeecCCCccccccCCCCcEEEEeccCCcEEEEEEEECCCCEEEEEECCCCCEeccccccccccc
Confidence 399999999999887764 22 222222222244 58889999999999998764321000000
Q ss_pred -eec-ccccc------------------------EEEEEEcCCCCEEEEe------------------------------
Q 047325 238 -TLL-KQECA------------------------VTALVVSSSRSIVYCG------------------------------ 261 (368)
Q Consensus 238 -~~~-~~~~~------------------------i~~~~~~~~~~~l~~~------------------------------ 261 (368)
.+. ....+ -..++++|+...++..
T Consensus 349 ~~~d~~~g~p~~~~~~~~~~~~~~~~p~~~G~~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 428 (668)
T 1kv9_A 349 EKVDLATGRPVEAPGVRYEKEPIVMWPSPFGAHNWHSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADA 428 (668)
T ss_dssp EEECTTTCCEEECTTTTCSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGC
T ss_pred cccccccCCccccccccccCCeeEECCCCccccCCCcceECCCCCEEEEeccccceEeeeeccccccccccccCcccccc
Confidence 000 00000 0125677766655531
Q ss_pred ------cCCCcEEEEeCCCccccceeeeccceEEEEEEeCCCEEEEeeCCCeEEEEecCCCceeeeEeeeccccCe-eEE
Q 047325 262 ------SSDGLVNFWEREKQLSHGGVLKGHKLAVLCLAAAGKLVFSGSADKTICVWRRDGAIHTCLSVLTGHTGPV-KCL 334 (368)
Q Consensus 262 ------~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v-~~l 334 (368)
..+|.|..||+.+++...............+...+.+++.|+.||.|+.||.+++ +.+..+....... .-+
T Consensus 429 ~~~p~~~~~g~l~A~D~~tG~~~W~~~~~~~~~~~~~~t~gg~vf~g~~dg~l~a~d~~tG--~~l~~~~~~~~~~~~p~ 506 (668)
T 1kv9_A 429 TDVPAAVVSGALLAWDPVKQKAAWKVPYPTHWNGGTLSTAGNLVFQGTAAGQMHAYSADKG--EALWQFEAQSGIVAAPM 506 (668)
T ss_dssp CCCCGGGCEEEEEEEETTTTEEEEEEEESSSCCCCEEEETTTEEEEECTTSEEEEEETTTC--CEEEEEECSSCCCSCCE
T ss_pred CCCCCCCccceEEEEeCCCCcEEEEccCCCCCcCceeEeCCCEEEEECCcccchhhhhhcC--hhheEecCCCCcccCce
Confidence 1347899999998877644433332222455668889999999999999998876 5566655433211 223
Q ss_pred EEecCCe
Q 047325 335 AVEEDRD 341 (368)
Q Consensus 335 ~~~~~~~ 341 (368)
.+..+|+
T Consensus 507 ~~~~~G~ 513 (668)
T 1kv9_A 507 TFELAGR 513 (668)
T ss_dssp EEEETTE
T ss_pred EEEECCE
Confidence 4445555
No 242
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=98.95 E-value=7.4e-07 Score=79.56 Aligned_cols=287 Identities=10% Similarity=0.038 Sum_probs=149.6
Q ss_pred ecCCEEEEccCCCcEEEEcCCccee--cccCCC----CCee-EEEEeCCEEEEEeC------CCeEEEEeecCCCccccc
Q 047325 52 ASKDLLYTGSDSKNIRVWKNLKEFC--GFKASS----GLVK-AIVISGEKIFTGHQ------DGKIRVWKISPKNQSVHK 118 (368)
Q Consensus 52 ~~~~~l~s~~~dg~i~iw~~~~~~~--~~~~~~----~~v~-~~~~~~~~l~s~~~------dg~i~vw~~~~~~~~~~~ 118 (368)
..++.++.++.|+.+..+|..+... .+.... ..+. +....++.++.++. +|.|..+|..+++.....
T Consensus 113 ~~~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~P~v~~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~ 192 (571)
T 2ad6_A 113 YGAGQIVKKQANGHLLALDAKTGKINWEVEVCDPKVGSTLTQAPFVAKDTVLMGCSGAELGVRGAVNAFDLKTGELKWRA 192 (571)
T ss_dssp EETTEEEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEEETTEEEEECBCGGGTCCCEEEEEETTTCCEEEEE
T ss_pred EECCEEEEEeCCCEEEEEECCCCCEEEEecCCCCCccceeccCCEEECCEEEEEecCCccCCCCEEEEEECCCCcEEEEE
Confidence 3455777788889999999764422 211110 0111 11234667777765 799999999999876654
Q ss_pred cCCccccceeeeeccCCCCcee-------EecccceeeeeecCCCEeEEEEcCCCCEEEEEeCC----------------
Q 047325 119 RAGTLPTLKDIFKSSIKPSNYI-------EVRRHRTALWIRHSDAVSCMSLDQDCGLLYTASWD---------------- 175 (368)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---------------- 175 (368)
...........-........+. ........ ..+-......+++.++...++.+..+
T Consensus 193 ~~~~~~~~~~~~p~~~~~~~~~G~~~~g~~~w~~~~~-~~gg~~~w~~~a~d~~~g~vy~~~g~~~~~~~~~~~gd~~y~ 271 (571)
T 2ad6_A 193 FATGSDDSVRLAKDFNSANPHYGQFGLGTKTWEGDAW-KIGGGTNWGWYAYDPKLNLFYYGSGNPAPWNETMRPGDNKWT 271 (571)
T ss_dssp ESSSCHHHHTBCTTTTTTCGGGCCSSHHHHTSSTTGG-GGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTT
T ss_pred ccCCCccccccCcccccccccccccccccccCcccce-ecCCCCeeeeEEEcCCCCeEEEECCCCccccCCccCCCceeE
Confidence 4321110000000000000000 00000000 00000111235566666666666532
Q ss_pred CcEEEEEccCCeEEEEeecC--C--------CceEEEEeCCCC----eEEEEcCCCeEEEEEcCCCCCCcccccce----
Q 047325 176 RTFKVWRISDSKCLESVSAH--D--------DAVNSVVSSSEG----LIFTGSADGTVKVWKREQHGKGTKHSLAQ---- 237 (368)
Q Consensus 176 ~~i~iwd~~~~~~~~~~~~~--~--------~~v~~~~~~~~~----~l~~~~~dg~i~i~d~~~~~~~~~~~~~~---- 237 (368)
+.|..+|..+|+.+-.++.. . .++. +....+| .++.++.+|.++++|.++++.........
T Consensus 272 ~~v~Ald~~tG~~~W~~~~~~~d~~d~~~~~~p~l-~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~~w~~~~~~~~~w 350 (571)
T 2ad6_A 272 MTIWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMVL-TDQPVNGKMTPLLSHIDRNGILYTLNRENGNLIVAEKVDPAVNV 350 (571)
T ss_dssp TEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEE-EEEEETTEEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCS
T ss_pred EEEEEEecCCCcEEEEecCCCCcccccccCCCCEE-EecccCCcEEEEEEEeCCCcEEEEEECCCCCEEeeecccCCccc
Confidence 35999999999988777632 1 1221 2222345 36778889999999988764321111000
Q ss_pred --eec-cccccE--------------------------EEEEEcCCCCEEEEec--------------------------
Q 047325 238 --TLL-KQECAV--------------------------TALVVSSSRSIVYCGS-------------------------- 262 (368)
Q Consensus 238 --~~~-~~~~~i--------------------------~~~~~~~~~~~l~~~~-------------------------- 262 (368)
... ....++ ..++++|+..+++...
T Consensus 351 ~~~~d~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~ 430 (571)
T 2ad6_A 351 FKKVDLKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQGVDSYDPESRTLYAGLNHICMDWEPFMLPYRAGQFFVGATLA 430 (571)
T ss_dssp EEEECTTTCSEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEE
T ss_pred cccccccCCceecccccCCCCCCCceEECCCCccccCCCCceECCCCCEEEEEchhccccccccccccccCCccccccce
Confidence 000 000011 2356777777666653
Q ss_pred -----------CCCcEEEEeCCCccccceeeeccceEEEEEEeCCCEEEEeeCCCeEEEEecCCCceeeeEeeeccccC-
Q 047325 263 -----------SDGLVNFWEREKQLSHGGVLKGHKLAVLCLAAAGKLVFSGSADKTICVWRRDGAIHTCLSVLTGHTGP- 330 (368)
Q Consensus 263 -----------~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~- 330 (368)
.+|.|..||..+++...............+...+.+++.++.||.|+.+|.+++ +.+.++......
T Consensus 431 ~~~~~~~~~~~~~g~l~a~D~~tG~~~W~~~~~~~~~~~~~~t~gg~v~~g~~dg~l~a~D~~tG--~~lw~~~~~~~~~ 508 (571)
T 2ad6_A 431 MYPGPNGPTKKEMGQIRAFDLTTGKAKWTKWEKFAAWGGTLYTKGGLVWYATLDGYLKALDNKDG--KELWNFKMPSGGI 508 (571)
T ss_dssp EEECTTSTTSCCCEEEEEECTTTCCEEEEEEESSCCCSBCEEETTTEEEEECTTSEEEEEETTTC--CEEEEEECSSCCC
T ss_pred eccCccccCCCCCCeEEEEECCCCCEEEEecCCCCccceeEEECCCEEEEEcCCCeEEEEECCCC--CEEEEEeCCCCcE
Confidence 347899999988776544333222111233446778888999999999998876 556655432211
Q ss_pred eeEEEEecCCee
Q 047325 331 VKCLAVEEDRDS 342 (368)
Q Consensus 331 v~~l~~~~~~~~ 342 (368)
-.-+.+..+|+.
T Consensus 509 ~~p~~~~~~G~~ 520 (571)
T 2ad6_A 509 GSPMTYSFKGKQ 520 (571)
T ss_dssp SCCEEEEETTEE
T ss_pred eeeEEEEECCEE
Confidence 122345567763
No 243
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=98.93 E-value=4.2e-07 Score=76.64 Aligned_cols=218 Identities=13% Similarity=0.144 Sum_probs=130.5
Q ss_pred EEEEccCCCcEEEEcCCcc------eeccc------C-CCCCeeEEEEe-CCEEEEEeCC------CeEEEEeecCCCcc
Q 047325 56 LLYTGSDSKNIRVWKNLKE------FCGFK------A-SSGLVKAIVIS-GEKIFTGHQD------GKIRVWKISPKNQS 115 (368)
Q Consensus 56 ~l~s~~~dg~i~iw~~~~~------~~~~~------~-~~~~v~~~~~~-~~~l~s~~~d------g~i~vw~~~~~~~~ 115 (368)
++++|..++.|.++|+.+. ..... . -...-..+... +..++++..+ |.|.+.|.++.+..
T Consensus 98 l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdGi~Vs~~g~~~g~~~g~v~vlD~~T~~v~ 177 (462)
T 2ece_A 98 LIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGPDAIYISALGNEEGEGPGGILMLDHYSFEPL 177 (462)
T ss_dssp EEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECSSCEEEEEEEETTSCSCCEEEEECTTTCCEE
T ss_pred EEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECCCeEEEEcCCCcCCCCCCeEEEEECCCCeEE
Confidence 6777888999999998522 11110 0 00011222333 2366665555 78999999888755
Q ss_pred ccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcCCCCEEEEEe-------------------CCC
Q 047325 116 VHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCGLLYTAS-------------------WDR 176 (368)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-------------------~d~ 176 (368)
........ ...--..+.|+|+++.+++.. .+.
T Consensus 178 ~~~~~~~~-----------------------------~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d 228 (462)
T 2ece_A 178 GKWEIDRG-----------------------------DQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGN 228 (462)
T ss_dssp EECCSBCT-----------------------------TCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCC
T ss_pred EEEccCCC-----------------------------CccccceEEECCCCCEEEEccCcCccccccccchhhhhhccCC
Confidence 44432210 011123578899999888874 368
Q ss_pred cEEEEEccCCeEEEEeecC-C-CceEEEEe--CCCC-eEEEEc------CCCeEEEEEcCCCCCCcccccc----eeec-
Q 047325 177 TFKVWRISDSKCLESVSAH-D-DAVNSVVS--SSEG-LIFTGS------ADGTVKVWKREQHGKGTKHSLA----QTLL- 240 (368)
Q Consensus 177 ~i~iwd~~~~~~~~~~~~~-~-~~v~~~~~--~~~~-~l~~~~------~dg~i~i~d~~~~~~~~~~~~~----~~~~- 240 (368)
.|.+||+.+++.+.++... . .....+.| +|++ ++++++ .+++|.+|..+.+ .....+.+ ....
T Consensus 229 ~V~v~D~~~~k~~~tI~vg~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g-~~~~~~vIdi~~~~v~~ 307 (462)
T 2ece_A 229 RIHFWDLRKRKRIHSLTLGEENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDG-KWNAEKVIEIPAEPLEG 307 (462)
T ss_dssp EEEEEETTTTEEEEEEESCTTEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETT-EEEEEEEEEECCEECCS
T ss_pred EEEEEECCCCcEeeEEecCCCCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCC-ceeEEEEEeCCCccccc
Confidence 9999999999888888753 1 23445544 9998 555444 5678887766431 10000000 0000
Q ss_pred ----------cccccEEEEEEcCCCCEEEEecC-CCcEEEEeCCCc---cccceeeec-------c--------ceEEEE
Q 047325 241 ----------KQECAVTALVVSSSRSIVYCGSS-DGLVNFWEREKQ---LSHGGVLKG-------H--------KLAVLC 291 (368)
Q Consensus 241 ----------~~~~~i~~~~~~~~~~~l~~~~~-dg~i~i~d~~~~---~~~~~~~~~-------~--------~~~~~~ 291 (368)
+.......+.+++|+++|.++.. .+.|.+||+... +.......+ | .-.-+.
T Consensus 308 ~lp~~~~~f~~~~~~pa~I~lS~DGrfLYVSnrg~d~VavfdV~d~~~~~lv~~I~tGG~~~~~~~~~G~~~~ggPr~~~ 387 (462)
T 2ece_A 308 NLPEILKPFKAVPPLVTDIDISLDDKFLYLSLWGIGEVRQYDISNPFKPVLTGKVKLGGIFHRADHPAGHKLTGAPQMLE 387 (462)
T ss_dssp SCCGGGGGGTEECCCCCCEEECTTSCEEEEEETTTTEEEEEECSSTTSCEEEEEEECBTTTTCBCCTTSCCCCSCCCCEE
T ss_pred cccccccccccCCCceeEEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEEEEeCCeeccccccccccCCCCCCEEE
Confidence 00234678999999998887664 679999998632 222222222 0 124478
Q ss_pred EEeCCCEEEEee
Q 047325 292 LAAAGKLVFSGS 303 (368)
Q Consensus 292 ~~~~~~~l~~~~ 303 (368)
+++||++|+++.
T Consensus 388 lSpDGk~LyVaN 399 (462)
T 2ece_A 388 ISRDGRRVYVTN 399 (462)
T ss_dssp ECTTSSEEEEEC
T ss_pred EcCCCCEEEEEc
Confidence 999999999887
No 244
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=98.88 E-value=2.2e-07 Score=84.73 Aligned_cols=193 Identities=9% Similarity=0.125 Sum_probs=113.1
Q ss_pred cCCEEEEccCCCcEEEEcCCccee--cccCCCC----------C-eeEEEEeCCEEEEEeCCCeEEEEeecCCCcccccc
Q 047325 53 SKDLLYTGSDSKNIRVWKNLKEFC--GFKASSG----------L-VKAIVISGEKIFTGHQDGKIRVWKISPKNQSVHKR 119 (368)
Q Consensus 53 ~~~~l~s~~~dg~i~iw~~~~~~~--~~~~~~~----------~-v~~~~~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~ 119 (368)
.++.++.++.++.|.-+|..+... .+..... . -..+.+.++.++.++.|+.|..+|..+++......
T Consensus 65 ~~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~dg~l~alD~~tG~~~W~~~ 144 (668)
T 1kv9_A 65 HDGVIYTSMSWSRVIAVDAASGKELWRYDPEVAKVKARTSCCDAVNRGVALWGDKVYVGTLDGRLIALDAKTGKAIWSQQ 144 (668)
T ss_dssp ETTEEEEEEGGGEEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEEEBTEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred ECCEEEEECCCCeEEEEECCCChhceEECCCCCccccccccccCCccceEEECCEEEEEcCCCEEEEEECCCCCEeeeec
Confidence 456667777788888888754322 2221111 0 12345568889999999999999999998765544
Q ss_pred CCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcCCCCEEEEEeC------CCcEEEEEccCCeEEEEee
Q 047325 120 AGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCGLLYTASW------DRTFKVWRISDSKCLESVS 193 (368)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~------d~~i~iwd~~~~~~~~~~~ 193 (368)
....... +.....++ + .+..++++.. +|.|..+|..+|+.+-.+.
T Consensus 145 ~~~~~~~-----------------------~~~~~~P~----v--~~~~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~ 195 (668)
T 1kv9_A 145 TTDPAKP-----------------------YSITGAPR----V--VKGKVIIGNGGAEYGVRGFVSAYDADTGKLAWRFY 195 (668)
T ss_dssp CSCTTSS-----------------------CBCCSCCE----E--ETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEE
T ss_pred cCCCCCc-----------------------ceecCCCE----E--ECCEEEEeCCCCCcCCCCEEEEEECCCCcEEEEec
Confidence 3210000 00011111 1 1234555543 5899999999999987775
Q ss_pred cCC---C----------------------------ceEEEEeCCCC-eEEEEcCCC-------------------eEEEE
Q 047325 194 AHD---D----------------------------AVNSVVSSSEG-LIFTGSADG-------------------TVKVW 222 (368)
Q Consensus 194 ~~~---~----------------------------~v~~~~~~~~~-~l~~~~~dg-------------------~i~i~ 222 (368)
... . ....+++.++. .++.+..++ .|.-+
T Consensus 196 ~~~~~p~~~~~~~~~~~~~~~~~g~~~w~~~~gg~~w~~~a~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~Al 275 (668)
T 1kv9_A 196 TVPGDPALPYEHPELREAAKTWQGDQYWKLGGGGTVWDSMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAI 275 (668)
T ss_dssp SSCCCTTSCCSSHHHHHHHTTCCSSCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEE
T ss_pred ccCCCCCccccccccccccccCCccceeeeCCCCccccceEEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEE
Confidence 311 0 01134666654 777777665 38889
Q ss_pred EcCCCCCCcccccceeecccc-------ccEEEEEEcCCCC---EEEEecCCCcEEEEeCCCcccc
Q 047325 223 KREQHGKGTKHSLAQTLLKQE-------CAVTALVVSSSRS---IVYCGSSDGLVNFWEREKQLSH 278 (368)
Q Consensus 223 d~~~~~~~~~~~~~~~~~~~~-------~~i~~~~~~~~~~---~l~~~~~dg~i~i~d~~~~~~~ 278 (368)
|.+++...... ....|. .+.....+..+++ .++.++.+|.++++|.++++.+
T Consensus 276 D~~tG~~~W~~----~~~~~~~wd~~~~~~~~~~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l 337 (668)
T 1kv9_A 276 RPDTGKLAWHY----QVTPGDSWDFTATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKLI 337 (668)
T ss_dssp CTTTCCEEEEE----ESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEE
T ss_pred cCCCCceeeEe----ecCCCccccccCCCCcEEEEeccCCcEEEEEEEECCCCEEEEEECCCCCEe
Confidence 98876432111 111111 2222223333564 6889999999999999887655
No 245
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=98.85 E-value=1.1e-06 Score=68.68 Aligned_cols=186 Identities=7% Similarity=0.063 Sum_probs=113.5
Q ss_pred EeEEEEcCCCCEEEEEeCCC--cEEEEEccCCeEEEEeecCCCc-eEEEEeCCCCeEEEEcCCCeEEEEEcCCCCCCccc
Q 047325 157 VSCMSLDQDCGLLYTASWDR--TFKVWRISDSKCLESVSAHDDA-VNSVVSSSEGLIFTGSADGTVKVWKREQHGKGTKH 233 (368)
Q Consensus 157 v~~~~~~~~~~~l~~~~~d~--~i~iwd~~~~~~~~~~~~~~~~-v~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~ 233 (368)
...+.|+ ++.++.+.+.+| .|+.+|+.+++.+..+...... --.++...+...+..-.++.+.++|..+...
T Consensus 45 tqGL~~~-~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~~~FgeGit~~g~~ly~ltw~~~~v~v~D~~t~~~---- 119 (262)
T 3nol_A 45 TEGFFYR-NGYFYESTGLNGRSSIRKVDIESGKTLQQIELGKRYFGEGISDWKDKIVGLTWKNGLGFVWNIRNLRQ---- 119 (262)
T ss_dssp EEEEEEE-TTEEEEEEEETTEEEEEEECTTTCCEEEEEECCTTCCEEEEEEETTEEEEEESSSSEEEEEETTTCCE----
T ss_pred cceEEEE-CCEEEEECCCCCCceEEEEECCCCcEEEEEecCCccceeEEEEeCCEEEEEEeeCCEEEEEECccCcE----
Confidence 4788898 666666777665 8999999999999888754332 1234544333444555689999999987632
Q ss_pred ccceeeccccccEEEEEEcCCCCEEEEecCCCcEEEEeCCCccccceeeec-cceEE---EEEEe-CCCEEEEeeCCCeE
Q 047325 234 SLAQTLLKQECAVTALVVSSSRSIVYCGSSDGLVNFWEREKQLSHGGVLKG-HKLAV---LCLAA-AGKLVFSGSADKTI 308 (368)
Q Consensus 234 ~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~-~~~~~---~~~~~-~~~~l~~~~~dg~i 308 (368)
...+.... ....+.++++.|+.+..++.|.++|..+.+........ ...++ ..+.+ +|++.+..-.++.|
T Consensus 120 --~~ti~~~~---eG~glt~dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNELe~~~G~lyan~w~~~~I 194 (262)
T 3nol_A 120 --VRSFNYDG---EGWGLTHNDQYLIMSDGTPVLRFLDPESLTPVRTITVTAHGEELPELNELEWVDGEIFANVWQTNKI 194 (262)
T ss_dssp --EEEEECSS---CCCCEEECSSCEEECCSSSEEEEECTTTCSEEEEEECEETTEECCCEEEEEEETTEEEEEETTSSEE
T ss_pred --EEEEECCC---CceEEecCCCEEEEECCCCeEEEEcCCCCeEEEEEEeccCCccccccceeEEECCEEEEEEccCCeE
Confidence 33332221 11223356777777777888999999876655433221 11121 11222 66655555568889
Q ss_pred EEEecCCCceeeeEeeecc------------ccCeeEEEEecCCeee-ecCCcceEEEE
Q 047325 309 CVWRRDGAIHTCLSVLTGH------------TGPVKCLAVEEDRDSS-SSTSSCAQRWI 354 (368)
Q Consensus 309 ~iw~~~~~~~~~~~~~~~h------------~~~v~~l~~~~~~~~~-~~~~~~~~~w~ 354 (368)
.+.|..++ +.+..+.-. ..-.+.|+|+|++..+ +++-.-.++|.
T Consensus 195 ~vIDp~tG--~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTGK~Wp~~~e 251 (262)
T 3nol_A 195 VRIDPETG--KVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTGKLWPKVFE 251 (262)
T ss_dssp EEECTTTC--BEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEETTCSEEEE
T ss_pred EEEECCCC--cEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEECCCCCceEE
Confidence 99988776 444444321 1346899999987643 33333344443
No 246
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=98.81 E-value=9.2e-06 Score=75.83 Aligned_cols=270 Identities=13% Similarity=0.116 Sum_probs=158.9
Q ss_pred CCcEEEEEecCC-EEEEccCCCcEEEEcCCcc-eeccc----------CCCCCeeEEEEe-CCEEEEEeCCCeEEEEeec
Q 047325 44 EGHIYSLAASKD-LLYTGSDSKNIRVWKNLKE-FCGFK----------ASSGLVKAIVIS-GEKIFTGHQDGKIRVWKIS 110 (368)
Q Consensus 44 ~~~i~~~~~~~~-~l~s~~~dg~i~iw~~~~~-~~~~~----------~~~~~v~~~~~~-~~~l~s~~~dg~i~vw~~~ 110 (368)
...|.++..+.+ .|..|+.++-|..++.... ...+. .....|.++..+ ...|..|+.++-|..++..
T Consensus 312 ~~~v~~i~~D~~g~lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lWigt~~~Gl~~~~~~ 391 (781)
T 3v9f_A 312 NASARYIFQDSFNNIWIGTWGGGINFISNAPPTFHTWSYSPTQMNESSLSNKVVSSVCDDGQGKLWIGTDGGGINVFENG 391 (781)
T ss_dssp SSCEEEEEECSSCCEEEEEBSSCEEEECSSCCSCEEEC----CCCSSCCSSSCEEEEEECTTSCEEEEEBSSCEEEEETT
T ss_pred CCeEEEEEEeCCCCEEEEecCCeEEEeCCCCCcceeeccCccccccCCCCCcceEEEEEcCCCCEEEEeCCCcEEEEECC
Confidence 456889888755 6777887777888886532 22221 134568888887 4677888877778888875
Q ss_pred CCCccccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcCCCCEEEEEeCCCcEEEEEccCCeEEE
Q 047325 111 PKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCGLLYTASWDRTFKVWRISDSKCLE 190 (368)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~ 190 (368)
++......... ......|.++...+++. |..|+.++-|..+|..+++...
T Consensus 392 ~~~~~~~~~~~-----------------------------~~~~~~v~~i~~d~~g~-lWigt~~~Gl~~~~~~~~~~~~ 441 (781)
T 3v9f_A 392 KRVAIYNKENR-----------------------------ELLSNSVLCSLKDSEGN-LWFGTYLGNISYYNTRLKKFQI 441 (781)
T ss_dssp EEEEECC----------------------------------CCCSBEEEEEECTTSC-EEEEETTEEEEEECSSSCEEEE
T ss_pred CCeEEEccCCC-----------------------------CCCCcceEEEEECCCCC-EEEEeccCCEEEEcCCCCcEEE
Confidence 43221110000 01346788998887776 5557766779999987776443
Q ss_pred Eee--cCCCceEEEEeCCCCeEEEEcCCCeEEEEEcCCCCCCcccccceeeccccccEEEEEEcCCCCEEEEecCCCcEE
Q 047325 191 SVS--AHDDAVNSVVSSSEGLIFTGSADGTVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSSSRSIVYCGSSDGLVN 268 (368)
Q Consensus 191 ~~~--~~~~~v~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~ 268 (368)
... .....|.++...+++.|..|+. +.|..+|.....-. ..............|.++...+++++.+ |+.++-+.
T Consensus 442 ~~~~~~~~~~v~~i~~d~~g~lwigt~-~Gl~~~~~~~~~~~-~~~~~~~~~~~~~~i~~i~~d~~g~lWi-gt~~~Gl~ 518 (781)
T 3v9f_A 442 IELEKNELLDVRVFYEDKNKKIWIGTH-AGVFVIDLASKKVI-HHYDTSNSQLLENFVRSIAQDSEGRFWI-GTFGGGVG 518 (781)
T ss_dssp CCSTTTCCCCEEEEEECTTSEEEEEET-TEEEEEESSSSSCC-EEECTTTSSCSCSCEEEEEECTTCCEEE-EESSSCEE
T ss_pred eccCCCCCCeEEEEEECCCCCEEEEEC-CceEEEeCCCCeEE-ecccCcccccccceeEEEEEcCCCCEEE-EEcCCCEE
Confidence 221 1346789999988887777776 66889998654210 0000000001135789999998887555 44433477
Q ss_pred EEeCCCccccceeeec---cceEEEEEEeC-CCEEEEeeCCCeEEEEecCCCceeeeEeeec-cccCeeEEEEecCCeee
Q 047325 269 FWEREKQLSHGGVLKG---HKLAVLCLAAA-GKLVFSGSADKTICVWRRDGAIHTCLSVLTG-HTGPVKCLAVEEDRDSS 343 (368)
Q Consensus 269 i~d~~~~~~~~~~~~~---~~~~~~~~~~~-~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~-h~~~v~~l~~~~~~~~~ 343 (368)
.||.++.... ..... ....+.++..+ ...|..|+.+|.|..||..+..........+ ....|.++...++|.+-
T Consensus 519 ~~~~~~~~~~-~~~~~~~l~~~~i~~i~~d~~g~lWi~T~~Glv~~~d~~~~~~~~~~~~~gl~~~~i~~i~~d~~g~lW 597 (781)
T 3v9f_A 519 IYTPDMQLVR-KFNQYEGFCSNTINQIYRSSKGQMWLATGEGLVCFPSARNFDYQVFQRKEGLPNTHIRAISEDKNGNIW 597 (781)
T ss_dssp EECTTCCEEE-EECTTTTCSCSCEEEEEECTTSCEEEEETTEEEEESCTTTCCCEEECGGGTCSCCCCCEEEECSSSCEE
T ss_pred EEeCCCCeEE-EccCCCCCCCCeeEEEEECCCCCEEEEECCCceEEECCCCCcEEEccccCCCCCceEEEEEECCCCCEE
Confidence 7887654322 11111 13356666654 2334555557765888776543222111111 12357888888888755
Q ss_pred ecCC
Q 047325 344 SSTS 347 (368)
Q Consensus 344 ~~~~ 347 (368)
+++.
T Consensus 598 ~~t~ 601 (781)
T 3v9f_A 598 ASTN 601 (781)
T ss_dssp EECS
T ss_pred EEcC
Confidence 5444
No 247
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=98.78 E-value=8e-06 Score=76.22 Aligned_cols=260 Identities=14% Similarity=0.171 Sum_probs=152.2
Q ss_pred CcEEEEEecCC-EEEEccCCCcEEEEcCCcce-ecc----cCCCCCeeEEEEe-CCEEEEEeCCCeEEEEeecCCCcccc
Q 047325 45 GHIYSLAASKD-LLYTGSDSKNIRVWKNLKEF-CGF----KASSGLVKAIVIS-GEKIFTGHQDGKIRVWKISPKNQSVH 117 (368)
Q Consensus 45 ~~i~~~~~~~~-~l~s~~~dg~i~iw~~~~~~-~~~----~~~~~~v~~~~~~-~~~l~s~~~dg~i~vw~~~~~~~~~~ 117 (368)
..|.++..+++ .|..|+.++-|..+|..+.. ..+ ......|.++..+ ...|..|+.++-+..++..+++....
T Consensus 363 ~~v~~i~~d~~g~lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~lWigt~~~Gl~~~~~~~~~~~~~ 442 (781)
T 3v9f_A 363 KVVSSVCDDGQGKLWIGTDGGGINVFENGKRVAIYNKENRELLSNSVLCSLKDSEGNLWFGTYLGNISYYNTRLKKFQII 442 (781)
T ss_dssp SCEEEEEECTTSCEEEEEBSSCEEEEETTEEEEECC-----CCCSBEEEEEECTTSCEEEEETTEEEEEECSSSCEEEEC
T ss_pred cceEEEEEcCCCCEEEEeCCCcEEEEECCCCeEEEccCCCCCCCcceEEEEECCCCCEEEEeccCCEEEEcCCCCcEEEe
Confidence 56889988754 66677766668888876432 222 2234678888887 56777788877788888766542211
Q ss_pred ccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcCCCCEEEEEeCCCcEEEEEccCCeEEEEeecC--
Q 047325 118 KRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCGLLYTASWDRTFKVWRISDSKCLESVSAH-- 195 (368)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~-- 195 (368)
.... .....|.++...+++. |..|+. +-|..+|..+++........
T Consensus 443 ~~~~------------------------------~~~~~v~~i~~d~~g~-lwigt~-~Gl~~~~~~~~~~~~~~~~~~~ 490 (781)
T 3v9f_A 443 ELEK------------------------------NELLDVRVFYEDKNKK-IWIGTH-AGVFVIDLASKKVIHHYDTSNS 490 (781)
T ss_dssp CSTT------------------------------TCCCCEEEEEECTTSE-EEEEET-TEEEEEESSSSSCCEEECTTTS
T ss_pred ccCC------------------------------CCCCeEEEEEECCCCC-EEEEEC-CceEEEeCCCCeEEecccCccc
Confidence 1000 0345788888887775 555565 56899998876544332222
Q ss_pred ---CCceEEEEeCCCCeEEEEcCCCeEEEEEcCCCCCCcccccceeec----cccccEEEEEEcCCCCEEEEecCCCcEE
Q 047325 196 ---DDAVNSVVSSSEGLIFTGSADGTVKVWKREQHGKGTKHSLAQTLL----KQECAVTALVVSSSRSIVYCGSSDGLVN 268 (368)
Q Consensus 196 ---~~~v~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~----~~~~~i~~~~~~~~~~~l~~~~~dg~i~ 268 (368)
...|.++...+++.|..|+.++.|..+|.+... ...+. .....|.++...+++++.++. .+|.+.
T Consensus 491 ~~~~~~i~~i~~d~~g~lWigt~~~Gl~~~~~~~~~-------~~~~~~~~~l~~~~i~~i~~d~~g~lWi~T-~~Glv~ 562 (781)
T 3v9f_A 491 QLLENFVRSIAQDSEGRFWIGTFGGGVGIYTPDMQL-------VRKFNQYEGFCSNTINQIYRSSKGQMWLAT-GEGLVC 562 (781)
T ss_dssp SCSCSCEEEEEECTTCCEEEEESSSCEEEECTTCCE-------EEEECTTTTCSCSCEEEEEECTTSCEEEEE-TTEEEE
T ss_pred ccccceeEEEEEcCCCCEEEEEcCCCEEEEeCCCCe-------EEEccCCCCCCCCeeEEEEECCCCCEEEEE-CCCceE
Confidence 357899999988977777775568888876431 11111 124568899998888755544 467558
Q ss_pred EEeCCCccccceee-ec-cceEEEEEEe--CCCEEEEeeCCCeEEEEecCCCceeeeEeeeccc-c--CeeEEEEecCCe
Q 047325 269 FWEREKQLSHGGVL-KG-HKLAVLCLAA--AGKLVFSGSADKTICVWRRDGAIHTCLSVLTGHT-G--PVKCLAVEEDRD 341 (368)
Q Consensus 269 i~d~~~~~~~~~~~-~~-~~~~~~~~~~--~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~-~--~v~~l~~~~~~~ 341 (368)
.||.++........ .+ ....+.++.. +|. |..++.+| |..++.++..........+-. . ...++...++|.
T Consensus 563 ~~d~~~~~~~~~~~~~gl~~~~i~~i~~d~~g~-lW~~t~~G-l~~~~~~~~~~~~~~~~dGl~~~~f~~~~~~~~~~G~ 640 (781)
T 3v9f_A 563 FPSARNFDYQVFQRKEGLPNTHIRAISEDKNGN-IWASTNTG-ISCYITSKKCFYTYDHSNNIPQGSFISGCVTKDHNGL 640 (781)
T ss_dssp ESCTTTCCCEEECGGGTCSCCCCCEEEECSSSC-EEEECSSC-EEEEETTTTEEEEECGGGTCCSSCEEEEEEEECTTSC
T ss_pred EECCCCCcEEEccccCCCCCceEEEEEECCCCC-EEEEcCCc-eEEEECCCCceEEecccCCccccccccCceEECCCCE
Confidence 88877543221110 00 1123445554 454 44455566 667776654222111111111 1 134667777887
Q ss_pred eeecC
Q 047325 342 SSSST 346 (368)
Q Consensus 342 ~~~~~ 346 (368)
+..++
T Consensus 641 l~~g~ 645 (781)
T 3v9f_A 641 IYFGS 645 (781)
T ss_dssp EEEEE
T ss_pred EEEEC
Confidence 54433
No 248
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=98.78 E-value=8e-07 Score=81.07 Aligned_cols=260 Identities=11% Similarity=0.050 Sum_probs=135.6
Q ss_pred cCCEEEEccCCC-----------cEEEEcCCcce----ecc-cCCCCCeeEEEE--eCCEEEEEeC-CCeEEEEeecCCC
Q 047325 53 SKDLLYTGSDSK-----------NIRVWKNLKEF----CGF-KASSGLVKAIVI--SGEKIFTGHQ-DGKIRVWKISPKN 113 (368)
Q Consensus 53 ~~~~l~s~~~dg-----------~i~iw~~~~~~----~~~-~~~~~~v~~~~~--~~~~l~s~~~-dg~i~vw~~~~~~ 113 (368)
++.+++.|+.+. .+.+||..+.. ... ..+.....++++ ++..++.|+. +..+.+||..+.+
T Consensus 197 ~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~lyv~GG~~~~~v~~yd~~t~~ 276 (656)
T 1k3i_A 197 SGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTSLYDSSSDS 276 (656)
T ss_dssp TTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCEEEEEGGGTE
T ss_pred CCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccCCCCCCccccccCCCCCCEEEeCCCCCCceEEecCcCCc
Confidence 455777776543 57889876432 112 123333444554 3777788874 5579999987654
Q ss_pred ccccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcCCCCEEEEEe-CC-----CcEEEEEccCCe
Q 047325 114 QSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCGLLYTAS-WD-----RTFKVWRISDSK 187 (368)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d-----~~i~iwd~~~~~ 187 (368)
-...... + ....-.++...++++.++.|+ .+ ..+.+||..+.+
T Consensus 277 W~~~~~~---~----------------------------~~R~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t~~ 325 (656)
T 1k3i_A 277 WIPGPDM---Q----------------------------VARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKT 325 (656)
T ss_dssp EEECCCC---S----------------------------SCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTE
T ss_pred eeECCCC---C----------------------------ccccccceEEecCCeEEEEeCcccCCcccccceEeCCCCCc
Confidence 2111100 0 111113455667889888888 34 579999998776
Q ss_pred EEEEe----e-cCCCceEEEEeCCCC-eEEEEcCC---------CeEEEEEcCCCCCCcccccceeecc------ccccE
Q 047325 188 CLESV----S-AHDDAVNSVVSSSEG-LIFTGSAD---------GTVKVWKREQHGKGTKHSLAQTLLK------QECAV 246 (368)
Q Consensus 188 ~~~~~----~-~~~~~v~~~~~~~~~-~l~~~~~d---------g~i~i~d~~~~~~~~~~~~~~~~~~------~~~~i 246 (368)
-...- . ..... ....+..++ .++.|+.+ ..+..||.....- ......... ....-
T Consensus 326 W~~~~~~~~~p~~~~~-~~~~~~~~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w---~~~~~~~~~~~~~~~~~~~~ 401 (656)
T 1k3i_A 326 WTSLPNAKVNPMLTAD-KQGLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGD---VKSAGKRQSNRGVAPDAMCG 401 (656)
T ss_dssp EEEETTSCSGGGCCCC-TTGGGTTTCSCCEEECGGGCEEECCSSSEEEEEECSTTCE---EEEEEECEETTEECCCCBTC
T ss_pred ceeCCCcccccccccc-ccceeecCCceEEEECCCCcEEEecCccceeeeecCCcce---eecCCccccccccCCCCCCC
Confidence 33320 0 00000 001122333 33444433 4567888875421 011110000 01122
Q ss_pred EEEEEcC-CCCEEEEecCCC-----------cEEEEeCCCccccce---eee-ccceEEEEEEeCCCEEEEeeCC-----
Q 047325 247 TALVVSS-SRSIVYCGSSDG-----------LVNFWEREKQLSHGG---VLK-GHKLAVLCLAAAGKLVFSGSAD----- 305 (368)
Q Consensus 247 ~~~~~~~-~~~~l~~~~~dg-----------~i~i~d~~~~~~~~~---~~~-~~~~~~~~~~~~~~~l~~~~~d----- 305 (368)
.++.+.. ++++++.|+.++ .+.+||..+..-... ... .......++.+++++++.|+.+
T Consensus 402 ~av~~~~~~~~i~v~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~mp~~R~~~~~~~l~~g~i~v~GG~~~~~~~ 481 (656)
T 1k3i_A 402 NAVMYDAVKGKILTFGGSPDYQDSDATTNAHIITLGEPGTSPNTVFASNGLYFARTFHTSVVLPDGSTFITGGQRRGIPF 481 (656)
T ss_dssp EEEEEETTTTEEEEECCBSSSSSSBCCCCEEEEECCSTTSCCEEEECTTCCSSCCBSCEEEECTTSCEEEECCBSBCCTT
T ss_pred ceEeccCCCCeEEEEeCCCCCCCCCcCCcceEEEcCCCCCCCeeEEccCCCCCCcccCCeEECCCCCEEEECCcccCcCc
Confidence 3444433 677888887543 677888765432211 111 1111223445699999999865
Q ss_pred ------CeEEEEecCCCceeeeEeeeccccCeeEEEEecCCeeeecCC
Q 047325 306 ------KTICVWRRDGAIHTCLSVLTGHTGPVKCLAVEEDRDSSSSTS 347 (368)
Q Consensus 306 ------g~i~iw~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~ 347 (368)
..+.+||..+.....+..+...........+.|++++++.++
T Consensus 482 ~~~~~~~~v~~ydp~t~~W~~~~~~~~~R~~hs~a~ll~dg~v~v~GG 529 (656)
T 1k3i_A 482 EDSTPVFTPEIYVPEQDTFYKQNPNSIVRVYHSISLLLPDGRVFNGGG 529 (656)
T ss_dssp CCCSBCCCCEEEEGGGTEEEECCCCSSCCCTTEEEEECTTSCEEEEEC
T ss_pred CCCCcccceEEEcCCCCceeecCCCCCccccccHhhcCCCcEEEecCC
Confidence 468999988775555443332233334455678998654443
No 249
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=98.76 E-value=1.3e-05 Score=66.26 Aligned_cols=235 Identities=9% Similarity=-0.006 Sum_probs=134.3
Q ss_pred EEEEEecC--CEEEEccCCCcEEEEcCCcc-eecccC--------------------CCCCeeEEEEe--CCEEEEEeCC
Q 047325 47 IYSLAASK--DLLYTGSDSKNIRVWKNLKE-FCGFKA--------------------SSGLVKAIVIS--GEKIFTGHQD 101 (368)
Q Consensus 47 i~~~~~~~--~~l~s~~~dg~i~iw~~~~~-~~~~~~--------------------~~~~v~~~~~~--~~~l~s~~~d 101 (368)
..++++++ ++++++..++.|..|+.... ...+.. .......++++ +..|+.+...
T Consensus 21 p~~i~~d~~g~~l~v~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~l~v~d~~ 100 (322)
T 2fp8_A 21 PNSFTFDSTNKGFYTSVQDGRVIKYEGPNSGFVDFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQLYIVDCY 100 (322)
T ss_dssp CCCEECCTTCSSEEEECTTSEEEEECCTTTCEEEEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTTEEEEEETT
T ss_pred ceEEEEcCCCCEEEEEcCCCeEEEECCCCCceEEEecccccccccccccccchhccccCCCCceEEEcCCCCcEEEEECC
Confidence 34566653 46888888899999987642 322211 11346788887 4677777766
Q ss_pred CeEEEEeecCCCccccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcC-CCCEEEEEeC------
Q 047325 102 GKIRVWKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQ-DCGLLYTASW------ 174 (368)
Q Consensus 102 g~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~------ 174 (368)
+.|..+|..++......... . .........+++.+ ++++.++-..
T Consensus 101 ~~i~~~d~~~g~~~~~~~~~------------------------~----~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~ 152 (322)
T 2fp8_A 101 YHLSVVGSEGGHATQLATSV------------------------D----GVPFKWLYAVTVDQRTGIVYFTDVSTLYDDR 152 (322)
T ss_dssp TEEEEECTTCEECEEEESEE------------------------T----TEECSCEEEEEECTTTCCEEEEESCSSCCTT
T ss_pred CCEEEEeCCCCEEEEecccC------------------------C----CCcccccceEEEecCCCEEEEECCccccccc
Confidence 66777876543211100000 0 00123467899999 8876665432
Q ss_pred -----------CCcEEEEEccCCeEEEEeecCCCceEEEEeCCCC-eEEEE-cCCCeEEEEEcCCCCCCcccccceeecc
Q 047325 175 -----------DRTFKVWRISDSKCLESVSAHDDAVNSVVSSSEG-LIFTG-SADGTVKVWKREQHGKGTKHSLAQTLLK 241 (368)
Q Consensus 175 -----------d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~-~~dg~i~i~d~~~~~~~~~~~~~~~~~~ 241 (368)
++.|..+|..+++....... ......+++++++ .|+.+ ..++.|..|++....... ......
T Consensus 153 ~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~~-~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~-~~~~~~--- 227 (322)
T 2fp8_A 153 GVQQIMDTSDKTGRLIKYDPSTKETTLLLKE-LHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGT-AEVLVK--- 227 (322)
T ss_dssp CHHHHHHHTCCCEEEEEEETTTTEEEEEEEE-ESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTC-EEEEEE---
T ss_pred ccceehcccCCCceEEEEeCCCCEEEEeccC-CccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCc-cceEEe---
Confidence 36788899877765433322 2334678999998 45544 567899999987532111 111111
Q ss_pred ccccEEEEEEcCCCCEEEEecC----------CCcEEEEeCCCccccceeeecc---ceEEEEEE-eCCCEEEEeeCCCe
Q 047325 242 QECAVTALVVSSSRSIVYCGSS----------DGLVNFWEREKQLSHGGVLKGH---KLAVLCLA-AAGKLVFSGSADKT 307 (368)
Q Consensus 242 ~~~~i~~~~~~~~~~~l~~~~~----------dg~i~i~d~~~~~~~~~~~~~~---~~~~~~~~-~~~~~l~~~~~dg~ 307 (368)
..+ ...+++.++|++.++... .+.|..+|... +......... -..+..+. .+++++++...++.
T Consensus 228 ~~g-P~gi~~d~~G~l~va~~~~~~~~~~~~~~~~v~~~d~~G-~~~~~~~~~~g~~~~~~~~~~~~~g~L~v~~~~~~~ 305 (322)
T 2fp8_A 228 IPN-PGNIKRNADGHFWVSSSEELDGNMHGRVDPKGIKFDEFG-NILEVIPLPPPFAGEHFEQIQEHDGLLYIGTLFHGS 305 (322)
T ss_dssp CSS-EEEEEECTTSCEEEEEEEETTSSTTSCEEEEEEEECTTS-CEEEEEECCTTTTTSCCCEEEEETTEEEEECSSCSE
T ss_pred CCC-CCCeEECCCCCEEEEecCcccccccCCCccEEEEECCCC-CEEEEEECCCCCccccceEEEEeCCEEEEeecCCCc
Confidence 223 778999999987666544 46688888653 2221111111 11122222 45666666667888
Q ss_pred EEEEecCCC
Q 047325 308 ICVWRRDGA 316 (368)
Q Consensus 308 i~iw~~~~~ 316 (368)
|.++++...
T Consensus 306 i~~~~~~~~ 314 (322)
T 2fp8_A 306 VGILVYDKK 314 (322)
T ss_dssp EEEEEC---
T ss_pred eEEEecccc
Confidence 999987543
No 250
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=98.76 E-value=4.8e-06 Score=68.84 Aligned_cols=236 Identities=14% Similarity=0.065 Sum_probs=123.9
Q ss_pred eeEEEEe--CCEEEEEeCCCeEEEEeecCCCccccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEE
Q 047325 85 VKAIVIS--GEKIFTGHQDGKIRVWKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSL 162 (368)
Q Consensus 85 v~~~~~~--~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 162 (368)
..+++++ ++.++++..++.|..|+..++.............. . .. .... ..........+..+++
T Consensus 21 p~~i~~d~~g~~l~v~~~~~~i~~~~~~~~~~~~~~~~~~~~~~-~--~~--~g~~--------~~~~~~~~~~p~gi~~ 87 (322)
T 2fp8_A 21 PNSFTFDSTNKGFYTSVQDGRVIKYEGPNSGFVDFAYASPYWNK-A--FC--ENST--------DAEKRPLCGRTYDISY 87 (322)
T ss_dssp CCCEECCTTCSSEEEECTTSEEEEECCTTTCEEEEEESCTTCCH-H--HH--TTCC--------CGGGHHHHCCEEEEEE
T ss_pred ceEEEEcCCCCEEEEEcCCCeEEEECCCCCceEEEecccccccc-c--cc--cccc--------chhccccCCCCceEEE
Confidence 4456665 55688888899999998775432111000000000 0 00 0000 0000001235778999
Q ss_pred cCCCCEEEEEeCCCcEEEEEccCCeEEEEeec-----CCCceEEEEeCC-CCeEEEEcC------------------CCe
Q 047325 163 DQDCGLLYTASWDRTFKVWRISDSKCLESVSA-----HDDAVNSVVSSS-EGLIFTGSA------------------DGT 218 (368)
Q Consensus 163 ~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~-----~~~~v~~~~~~~-~~~l~~~~~------------------dg~ 218 (368)
.++...|+++...+.|..+|..+++.. .+.. .......+++.+ +|.++.+.. ++.
T Consensus 88 ~~~~g~l~v~d~~~~i~~~d~~~g~~~-~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~ 166 (322)
T 2fp8_A 88 NLQNNQLYIVDCYYHLSVVGSEGGHAT-QLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGR 166 (322)
T ss_dssp ETTTTEEEEEETTTEEEEECTTCEECE-EEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEE
T ss_pred cCCCCcEEEEECCCCEEEEeCCCCEEE-EecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehcccCCCce
Confidence 973345666655566888997755422 2211 123467899999 884444332 367
Q ss_pred EEEEEcCCCCCCcccccceeeccccccEEEEEEcCCCCEEEEe-cCCCcEEEEeCCCccccc-eee-eccceEEEEEEeC
Q 047325 219 VKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSSSRSIVYCG-SSDGLVNFWEREKQLSHG-GVL-KGHKLAVLCLAAA 295 (368)
Q Consensus 219 i~i~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~~dg~i~i~d~~~~~~~~-~~~-~~~~~~~~~~~~~ 295 (368)
|..+|..... .............++++|+++.|+.+ ...+.|..|++.....-. ..+ ......-+++.++
T Consensus 167 v~~~d~~~~~-------~~~~~~~~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~~~gP~gi~~d~~ 239 (322)
T 2fp8_A 167 LIKYDPSTKE-------TTLLLKELHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVKIPNPGNIKRNAD 239 (322)
T ss_dssp EEEEETTTTE-------EEEEEEEESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEEEEEECSSEEEEEECTT
T ss_pred EEEEeCCCCE-------EEEeccCCccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccceEEeCCCCCCeEECCC
Confidence 8888875431 11111112334678999999866555 566899999987532110 111 1111222566677
Q ss_pred CCEEEEeeC----------CCeEEEEecCCCceeeeEeeecc----ccCeeEEEEecCCeeeec
Q 047325 296 GKLVFSGSA----------DKTICVWRRDGAIHTCLSVLTGH----TGPVKCLAVEEDRDSSSS 345 (368)
Q Consensus 296 ~~~l~~~~~----------dg~i~iw~~~~~~~~~~~~~~~h----~~~v~~l~~~~~~~~~~~ 345 (368)
|++.++... .+.|..+|.+. +.+..+... ...++.+++ .++.+..+
T Consensus 240 G~l~va~~~~~~~~~~~~~~~~v~~~d~~G---~~~~~~~~~~g~~~~~~~~~~~-~~g~L~v~ 299 (322)
T 2fp8_A 240 GHFWVSSSEELDGNMHGRVDPKGIKFDEFG---NILEVIPLPPPFAGEHFEQIQE-HDGLLYIG 299 (322)
T ss_dssp SCEEEEEEEETTSSTTSCEEEEEEEECTTS---CEEEEEECCTTTTTSCCCEEEE-ETTEEEEE
T ss_pred CCEEEEecCcccccccCCCccEEEEECCCC---CEEEEEECCCCCccccceEEEE-eCCEEEEe
Confidence 886666544 45677776542 344444332 234677776 45654333
No 251
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=98.75 E-value=1.6e-05 Score=65.13 Aligned_cols=239 Identities=10% Similarity=0.058 Sum_probs=126.7
Q ss_pred cccCCCceeeeccCcCCcEEEEEecC--CEEEEccCCCcEEEEcCCcceecccCCCCCeeEEEEe--CCEEEEEeC-CC-
Q 047325 29 ENLPQNGLIGSLVREEGHIYSLAASK--DLLYTGSDSKNIRVWKNLKEFCGFKASSGLVKAIVIS--GEKIFTGHQ-DG- 102 (368)
Q Consensus 29 ~~~~~~~~~~~~~~h~~~i~~~~~~~--~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~-dg- 102 (368)
.+....+.+..+... .....+++++ +++++-..++.|..||.................++++ ++.+++... ++
T Consensus 17 ~~~~~~~~~~~~p~~-~~pegia~~~~g~lyv~d~~~~~I~~~d~~g~~~~~~~~~~~p~gia~~~dG~l~vad~~~~~~ 95 (306)
T 2p4o_A 17 IELAPAKIITSFPVN-TFLENLASAPDGTIFVTNHEVGEIVSITPDGNQQIHATVEGKVSGLAFTSNGDLVATGWNADSI 95 (306)
T ss_dssp BCCCCEEEEEEECTT-CCEEEEEECTTSCEEEEETTTTEEEEECTTCCEEEEEECSSEEEEEEECTTSCEEEEEECTTSC
T ss_pred CcCCCceEeEeCCCC-CCcceEEECCCCCEEEEeCCCCeEEEECCCCceEEEEeCCCCceeEEEcCCCcEEEEeccCCcc
Confidence 334445556666433 4567788864 4666666789999999775543332234567888887 554444332 22
Q ss_pred eEEEEeecCCCccccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcCCCCEEEEEeCCCcEEEEE
Q 047325 103 KIRVWKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCGLLYTASWDRTFKVWR 182 (368)
Q Consensus 103 ~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd 182 (368)
.|..++..+++........ .......++..+++..+++-..++.|..+|
T Consensus 96 ~v~~~d~~~g~~~~~~~~~-------------------------------~~~~~~g~~~~~~~~~~v~d~~~g~i~~~d 144 (306)
T 2p4o_A 96 PVVSLVKSDGTVETLLTLP-------------------------------DAIFLNGITPLSDTQYLTADSYRGAIWLID 144 (306)
T ss_dssp EEEEEECTTSCEEEEEECT-------------------------------TCSCEEEEEESSSSEEEEEETTTTEEEEEE
T ss_pred eEEEEcCCCCeEEEEEeCC-------------------------------CccccCcccccCCCcEEEEECCCCeEEEEe
Confidence 3555565554421111000 111123344445444444444578899999
Q ss_pred ccCCeE-EEEee---------cCCCceEEEEeCCCC--eEEEEcCCCeEEEEEcCCCCCCcccccceeeccccccEEEEE
Q 047325 183 ISDSKC-LESVS---------AHDDAVNSVVSSSEG--LIFTGSADGTVKVWKREQHGKGTKHSLAQTLLKQECAVTALV 250 (368)
Q Consensus 183 ~~~~~~-~~~~~---------~~~~~v~~~~~~~~~--~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~i~~~~ 250 (368)
..+++. +.... ..-...+.+ ++++ .+++-...+.|..+++........ ...+.. ......++
T Consensus 145 ~~~~~~~v~~~~~~~~~~~~~~~~~~pngi--s~dg~~lyv~d~~~~~I~~~~~~~~g~~~~---~~~~~~-~~~P~gi~ 218 (306)
T 2p4o_A 145 VVQPSGSIWLEHPMLARSNSESVFPAANGL--KRFGNFLYVSNTEKMLLLRIPVDSTDKPGE---PEIFVE-QTNIDDFA 218 (306)
T ss_dssp TTTTEEEEEEECGGGSCSSTTCCSCSEEEE--EEETTEEEEEETTTTEEEEEEBCTTSCBCC---CEEEEE-SCCCSSEE
T ss_pred CCCCcEeEEEECCccccccccCCCCcCCCc--CcCCCEEEEEeCCCCEEEEEEeCCCCCCCc---cEEEec-cCCCCCeE
Confidence 876532 21110 111234455 5666 455556688999999874211111 111111 12356688
Q ss_pred EcCCCCEEEEecCCCcEEEEeCCCccccceeee-c-cceEEEEEE---eCCCEEEEeeCC
Q 047325 251 VSSSRSIVYCGSSDGLVNFWEREKQLSHGGVLK-G-HKLAVLCLA---AAGKLVFSGSAD 305 (368)
Q Consensus 251 ~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~-~-~~~~~~~~~---~~~~~l~~~~~d 305 (368)
++++|++.++....+.|.++|............ + .....+++. ++++.|++++..
T Consensus 219 vd~dG~l~va~~~~~~V~~~~~~G~~~~~~~~~~~~~~p~~~a~~g~~~d~~~LyVt~~~ 278 (306)
T 2p4o_A 219 FDVEGNLYGATHIYNSVVRIAPDRSTTIIAQAEQGVIGSTAVAFGQTEGDCTAIYVVTNG 278 (306)
T ss_dssp EBTTCCEEEECBTTCCEEEECTTCCEEEEECGGGTCTTEEEEEECCSTTTTTEEEEEECT
T ss_pred ECCCCCEEEEeCCCCeEEEECCCCCEEEEeecccccCCceEEEEecccCCCCEEEEECCC
Confidence 999998877777788999999763221111111 1 222334454 566666655543
No 252
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=98.75 E-value=3.8e-06 Score=65.60 Aligned_cols=174 Identities=12% Similarity=0.066 Sum_probs=110.9
Q ss_pred CEeEEEEcCCCCEEEEEeCCCcEEEEEccCCeEEEEeecCCC-ceEEEEeCCCCeEEEEcCCCeEEEEEcCCCCCCcccc
Q 047325 156 AVSCMSLDQDCGLLYTASWDRTFKVWRISDSKCLESVSAHDD-AVNSVVSSSEGLIFTGSADGTVKVWKREQHGKGTKHS 234 (368)
Q Consensus 156 ~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~-~v~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~ 234 (368)
....+.|+. +.++.+.+.+|.|+.+|+.+++.+..+ -... .--.++...+...+..-.++.+.+||..+..
T Consensus 56 ftqGL~~~~-~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l~~~~FgeGit~~g~~Ly~ltw~~~~v~V~D~~Tl~------ 127 (268)
T 3nok_A 56 FTQGLVFHQ-GHFFESTGHQGTLRQLSLESAQPVWME-RLGNIFAEGLASDGERLYQLTWTEGLLFTWSGMPPQ------ 127 (268)
T ss_dssp CEEEEEEET-TEEEEEETTTTEEEECCSSCSSCSEEE-ECTTCCEEEEEECSSCEEEEESSSCEEEEEETTTTE------
T ss_pred ccceEEEEC-CEEEEEcCCCCEEEEEECCCCcEEeEE-CCCCcceeEEEEeCCEEEEEEccCCEEEEEECCcCc------
Confidence 346888874 566777778889999999999988877 3322 1234666555455556678999999998653
Q ss_pred cceeeccccccEEEEEEcCCCCEEEEecCCCcEEEEeCCCccccceeee-ccceEE---EEEEe-CCCEEEEeeCCCeEE
Q 047325 235 LAQTLLKQECAVTALVVSSSRSIVYCGSSDGLVNFWEREKQLSHGGVLK-GHKLAV---LCLAA-AGKLVFSGSADKTIC 309 (368)
Q Consensus 235 ~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~-~~~~~~---~~~~~-~~~~l~~~~~dg~i~ 309 (368)
....+...... ..++ ++++.|+.+..++.|.++|.++.+....... .+...+ ..+.+ +|++.+....++.|.
T Consensus 128 ~~~ti~~~~eG-wGLt--~Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe~~dG~lyanvw~s~~I~ 204 (268)
T 3nok_A 128 RERTTRYSGEG-WGLC--YWNGKLVRSDGGTMLTFHEPDGFALVGAVQVKLRGQPVELINELECANGVIYANIWHSSDVL 204 (268)
T ss_dssp EEEEEECSSCC-CCEE--EETTEEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEETTEEEEEETTCSEEE
T ss_pred EEEEEeCCCce-eEEe--cCCCEEEEECCCCEEEEEcCCCCeEEEEEEeCCCCcccccccccEEeCCEEEEEECCCCeEE
Confidence 23333322211 2333 5678888887889999999988665543322 122221 22333 665555555678899
Q ss_pred EEecCCCceeeeEeeecc-------------ccCeeEEEEecCCee
Q 047325 310 VWRRDGAIHTCLSVLTGH-------------TGPVKCLAVEEDRDS 342 (368)
Q Consensus 310 iw~~~~~~~~~~~~~~~h-------------~~~v~~l~~~~~~~~ 342 (368)
+.|..++ +.+..+.-. ..-.+.|+++|++..
T Consensus 205 vIDp~TG--~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~r 248 (268)
T 3nok_A 205 EIDPATG--TVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGR 248 (268)
T ss_dssp EECTTTC--BEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCC
T ss_pred EEeCCCC--cEEEEEECCCCcccccccccCcCCceEEEEEcCCCCE
Confidence 9988776 444444311 135789999998664
No 253
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=98.75 E-value=5.5e-06 Score=74.02 Aligned_cols=281 Identities=12% Similarity=0.080 Sum_probs=145.9
Q ss_pred EEEccCCCcEEEEcCCcceecc--cCCC----CCee-EEEEeCCEEEEEe------CCCeEEEEeecCCCccccccCCcc
Q 047325 57 LYTGSDSKNIRVWKNLKEFCGF--KASS----GLVK-AIVISGEKIFTGH------QDGKIRVWKISPKNQSVHKRAGTL 123 (368)
Q Consensus 57 l~s~~~dg~i~iw~~~~~~~~~--~~~~----~~v~-~~~~~~~~l~s~~------~dg~i~vw~~~~~~~~~~~~~~~~ 123 (368)
++.++.|+.+..+|..+..... .... ..+. +-.+.++.++.++ .+|.|+.+|.++++..........
T Consensus 124 V~v~t~dg~l~AlDa~TG~~~W~~~~~~~~~~~~~~ssP~v~~g~V~vg~~g~e~g~~g~v~A~D~~TG~~~W~~~~~~~ 203 (599)
T 1w6s_A 124 ILKTQLDGNVAALNAETGETVWKVENSDIKVGSTLTIAPYVVKDKVIIGSSGAELGVRGYLTAYDVKTGEQVWRAYATGP 203 (599)
T ss_dssp EEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEEETTEEEECCBCGGGTCCCEEEEEETTTCCEEEEEESSSC
T ss_pred EEEEcCCCEEEEEECCCCCEEEeecCCCCCccceeecCCEEECCEEEEEecccccCCCCeEEEEECCCCcEEEEEcCCCC
Confidence 7778888888888876432221 1111 0111 1122356677665 389999999999987665443221
Q ss_pred ccceeeeeccCCCCcee-------EecccceeeeeecCCCE-eEEEEcCCCCEEEEEeCC----------------CcEE
Q 047325 124 PTLKDIFKSSIKPSNYI-------EVRRHRTALWIRHSDAV-SCMSLDQDCGLLYTASWD----------------RTFK 179 (368)
Q Consensus 124 ~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~v-~~~~~~~~~~~l~~~~~d----------------~~i~ 179 (368)
......-.........+ ..... ..+..-...+ ..+++.+...+++.+..+ +.|.
T Consensus 204 ~~~~~~~p~~~~~~~~~g~~~~g~~tw~g--~~~~~gg~~~W~~~a~d~~~g~vy~g~g~~~p~~~~~r~gd~~y~~sv~ 281 (599)
T 1w6s_A 204 DKDLLLASDFNIKNPHYGQKGLGTGTWEG--DAWKIGGGTNWGWYAYDPGTNLIYFGTGNPAPWNETMRPGDNKWTMTIF 281 (599)
T ss_dssp HHHHTBCTTTTTTCGGGCCTTHHHHTSST--TGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTSSEEE
T ss_pred ccccccccccccccccccccccccccCCC--cceecCCCccccceeEeCCCCEEEEeCCCCccccCcccCCCccccceEE
Confidence 10000000000000000 00000 0000000111 134566777777777654 3799
Q ss_pred EEEccCCeEEEEeecCCC----------ceEEEEeC-CCC----eEEEEcCCCeEEEEEcCCCCCCcccccce------e
Q 047325 180 VWRISDSKCLESVSAHDD----------AVNSVVSS-SEG----LIFTGSADGTVKVWKREQHGKGTKHSLAQ------T 238 (368)
Q Consensus 180 iwd~~~~~~~~~~~~~~~----------~v~~~~~~-~~~----~l~~~~~dg~i~i~d~~~~~~~~~~~~~~------~ 238 (368)
.+|..+|+.+-.++.... ++. +... .+| .++.++.+|.++++|.++++......... .
T Consensus 282 Ald~~TG~~~W~~q~~~~d~wd~d~~~~p~l-~d~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~~~~~ 360 (599)
T 1w6s_A 282 GRDADTGEAKFGYQKTPHDEWDYAGVNVMML-SEQKDKDGKARKLLTHPDRNGIVYTLDRTDGALVSANKLDDTVNVFKS 360 (599)
T ss_dssp EEETTTCCEEEEEESSTTCSSCCCCCCCCEE-EEEECTTSCEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEEE
T ss_pred EEeCCCCceeeEeecCCCccccccCCCccEE-EeccccCCcEEEEEEEECCCcEEEEEECCCCCEeecccccCCcccccc
Confidence 999999999877764321 121 2221 344 46678899999999998764321111000 0
Q ss_pred ec-cccccE--------------------------EEEEEcCCCCEEEEec-----------------------------
Q 047325 239 LL-KQECAV--------------------------TALVVSSSRSIVYCGS----------------------------- 262 (368)
Q Consensus 239 ~~-~~~~~i--------------------------~~~~~~~~~~~l~~~~----------------------------- 262 (368)
.. ....++ ..++++|+..++++..
T Consensus 361 ~~~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~ 440 (599)
T 1w6s_A 361 VDLKTGQPVRDPEYGTRMDHLAKDICPSAMGYHNQGHDSYDPKRELFFMGINHICMDWEPFMLPYKAGQFFVGATLNMYP 440 (599)
T ss_dssp ECTTTCCEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEE
T ss_pred cccCCCceeeccccCCCCCCCccEeccCcccccCCCCccCCCCCCEEEEeccccceeeecccccccCCcceecccceecc
Confidence 00 000001 1345666555544321
Q ss_pred ----------CCCcEEEEeCCCccccceeeeccceEEEEEEeCCCEEEEeeCCCeEEEEecCCCceeeeEeeeccccC-e
Q 047325 263 ----------SDGLVNFWEREKQLSHGGVLKGHKLAVLCLAAAGKLVFSGSADKTICVWRRDGAIHTCLSVLTGHTGP-V 331 (368)
Q Consensus 263 ----------~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~-v 331 (368)
..|.|.-||+.+++.......+.....-.+...+.+++.++.||.++.||.+++ +.+.+++-.... .
T Consensus 441 ~p~~~~~~~~~~G~l~A~D~~tG~~~W~~~~~~~~~~g~~~tagg~vf~gt~dg~l~A~D~~tG--~~lW~~~l~~g~~~ 518 (599)
T 1w6s_A 441 GPKGDRQNYEGLGQIKAYNAITGDYKWEKMERFAVWGGTMATAGDLVFYGTLDGYLKARDSDTG--DLLWKFKIPSGAIG 518 (599)
T ss_dssp CTTSBTTTTBCCEEEEEECTTTCCEEEEEEESSCCCSBCEEETTTEEEEECTTSEEEEEETTTC--CEEEEEECSSCCCS
T ss_pred CCcCCcccCCCcCeEEEEECCCCCEEeEecCCCCccCcceEecCCEEEEECCCCeEEEEECCCC--CEEEEeeCCCCcEe
Confidence 347788889888776544332221111224456888888999999999999887 566665433221 1
Q ss_pred eEEEEecCCee
Q 047325 332 KCLAVEEDRDS 342 (368)
Q Consensus 332 ~~l~~~~~~~~ 342 (368)
.-+.+..+|+.
T Consensus 519 ~P~~y~~~G~q 529 (599)
T 1w6s_A 519 YPMTYTHKGTQ 529 (599)
T ss_dssp CCEEEEETTEE
T ss_pred ccEEEEeCCEE
Confidence 22455667763
No 254
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=98.71 E-value=3.1e-05 Score=62.03 Aligned_cols=173 Identities=9% Similarity=-0.008 Sum_probs=103.6
Q ss_pred CCEeEEEEcCCCCEEEEEe-CCCcEEEEEccCCeEEEEeecCCCceEEEEeCCCC--eEEEEcCCCeEEEEEcCCCCCCc
Q 047325 155 DAVSCMSLDQDCGLLYTAS-WDRTFKVWRISDSKCLESVSAHDDAVNSVVSSSEG--LIFTGSADGTVKVWKREQHGKGT 231 (368)
Q Consensus 155 ~~v~~~~~~~~~~~l~~~~-~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~--~l~~~~~dg~i~i~d~~~~~~~~ 231 (368)
..+..+++++++..|+.+. .++.|..+|+..+.....+.........+++.+++ .+++-...+.|.++++.....
T Consensus 36 ~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~-- 113 (267)
T 1npe_A 36 KVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQR-- 113 (267)
T ss_dssp EEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC--
T ss_pred CcEEEEEEecCCCEEEEEECCCCEEEEEecCCCCcEEEEECCCCCccEEEEEecCCeEEEEECCCCEEEEEEcCCCCE--
Confidence 3467899999766665554 56799999987655443333333467889998864 445555678999999864311
Q ss_pred ccccceeeccccccEEEEEEcCCCCEEEEecC---CCcEEEEeCCCccccceee-e-ccceEEEEEEeCCCEEEEe-eCC
Q 047325 232 KHSLAQTLLKQECAVTALVVSSSRSIVYCGSS---DGLVNFWEREKQLSHGGVL-K-GHKLAVLCLAAAGKLVFSG-SAD 305 (368)
Q Consensus 232 ~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~---dg~i~i~d~~~~~~~~~~~-~-~~~~~~~~~~~~~~~l~~~-~~d 305 (368)
.............++++|++..|+.+.. .+.|..+++...... ... . .....-+++++++..|+.+ ...
T Consensus 114 ----~~~~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~~~~-~~~~~~~~~P~gia~d~~~~~lyv~d~~~ 188 (267)
T 1npe_A 114 ----RVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNRR-ILAQDNLGLPNGLTFDAFSSQLCWVDAGT 188 (267)
T ss_dssp ----EEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCCE-EEECTTCSCEEEEEEETTTTEEEEEETTT
T ss_pred ----EEEEECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCCCCcE-EEEECCCCCCcEEEEcCCCCEEEEEECCC
Confidence 1111112245789999996665555443 468888887643221 111 1 1223346778876655544 456
Q ss_pred CeEEEEecCCCceeeeEeeeccccCeeEEEEe
Q 047325 306 KTICVWRRDGAIHTCLSVLTGHTGPVKCLAVE 337 (368)
Q Consensus 306 g~i~iw~~~~~~~~~~~~~~~h~~~v~~l~~~ 337 (368)
+.|.+++++.... ...... ......++..
T Consensus 189 ~~I~~~~~~g~~~--~~~~~~-~~~P~gi~~d 217 (267)
T 1npe_A 189 HRAECLNPAQPGR--RKVLEG-LQYPFAVTSY 217 (267)
T ss_dssp TEEEEEETTEEEE--EEEEEC-CCSEEEEEEE
T ss_pred CEEEEEecCCCce--EEEecC-CCCceEEEEe
Confidence 8899999875422 222222 2334567765
No 255
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=98.71 E-value=1.5e-05 Score=71.25 Aligned_cols=181 Identities=15% Similarity=0.119 Sum_probs=107.3
Q ss_pred EEEEcCCCCEEEEEeC--------------------C----CcEEEEEccCCeEEEEeec--CC--------CceEEEEe
Q 047325 159 CMSLDQDCGLLYTASW--------------------D----RTFKVWRISDSKCLESVSA--HD--------DAVNSVVS 204 (368)
Q Consensus 159 ~~~~~~~~~~l~~~~~--------------------d----~~i~iwd~~~~~~~~~~~~--~~--------~~v~~~~~ 204 (368)
.++++|+..+++.+.. | +.|..+|..+|+.+-.++. |. .++. +..
T Consensus 250 ~~a~d~~~g~vyv~~gn~~~~~~~~r~~~gg~~~~~d~~~~~~v~AlD~~TG~~~W~~q~~~~d~wd~~~~~~p~l-~~~ 328 (582)
T 1flg_A 250 SASFDAETNTIIVGAGNPGPWNTWARTAKGGNPHDYDSLYTSGQVGVDPSSGEVKWFYQHTPNDAWDFSGNNELVL-FDY 328 (582)
T ss_dssp CCEEETTTTEEEEEECCBSSSCGGGGSCTTSCSTTCCCTTCSEEEEECTTTCCEEEEEESSTTCCSCCCCCCCCEE-EEE
T ss_pred CceEcCCCCEEEEeCCCCCcccCcccccCCCcccccCCcccceEEEEeCCCCCEEEEEeCCCCCcccccCCCCcEE-Eee
Confidence 4677777777777663 2 5899999999999887753 21 1221 122
Q ss_pred C-CCC----eEEEEcCCCeEEEEEcCCCCCCcccccce------ee-------------c---------ccccc------
Q 047325 205 S-SEG----LIFTGSADGTVKVWKREQHGKGTKHSLAQ------TL-------------L---------KQECA------ 245 (368)
Q Consensus 205 ~-~~~----~l~~~~~dg~i~i~d~~~~~~~~~~~~~~------~~-------------~---------~~~~~------ 245 (368)
. .+| .++.++.+|.++++|.++++......... .. . .....
T Consensus 329 ~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~P~~ 408 (582)
T 1flg_A 329 KAKDGKIVKATAHADRNGFFYVVDRSNGKLQNAFPFVDNITWASHIDLKTGRPVEREGQRPPLPEPGQKHGKAVEVSPPF 408 (582)
T ss_dssp ECSSSCEEEEEEEECTTSEEEEEETTTCCEEEEEESSSCCCSEEEECTTTCCEEECTTCSCCCCCTTCSSCCCEEESSCT
T ss_pred ecCCCCEEEEEEEECCCceEEEEECCCCCEecccccccCccccccccccCCCEeEccccCCccccccccCCCceEECcCC
Confidence 1 344 57788999999999988764321111100 00 0 00000
Q ss_pred -----EEEEEEcCCCCEEEEec---------------------------------CCCcEEEEeCCCccccceeeeccce
Q 047325 246 -----VTALVVSSSRSIVYCGS---------------------------------SDGLVNFWEREKQLSHGGVLKGHKL 287 (368)
Q Consensus 246 -----i~~~~~~~~~~~l~~~~---------------------------------~dg~i~i~d~~~~~~~~~~~~~~~~ 287 (368)
-..++++|+..++++.. .+|.|.-||+.+++...........
T Consensus 409 ~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~p~~~~~~G~l~A~D~~tG~~~W~~~~~~~~ 488 (582)
T 1flg_A 409 LGGKNWNPMAYSQDTGLFYVPANHWKEDYWTEEVSYTKGSAYLGMGFRIKRMYDDHVGSLRAMDPVSGKVVWEHKEHLPL 488 (582)
T ss_dssp TCSSCSSCCEECTTTCCEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEESCSSCSEEEEEECTTTCCEEEEEEESSCC
T ss_pred ccccCCCCceECCCCCEEEEechhcceeeecccccccCCCceeccceeecCCCCCCcceEEEEECCCCCEEEEecCCCCC
Confidence 01345666555544432 2578999999888766444332221
Q ss_pred EEEEEEeCCCEEEEeeCCCeEEEEecCCCceeeeEeeeccccCe-eEEEEecCCee
Q 047325 288 AVLCLAAAGKLVFSGSADKTICVWRRDGAIHTCLSVLTGHTGPV-KCLAVEEDRDS 342 (368)
Q Consensus 288 ~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v-~~l~~~~~~~~ 342 (368)
.-..+...+.+++.|+.||.++.||.+++ +.+.+++...... .-+.+..+|+.
T Consensus 489 ~~g~~~tagglvf~g~~dg~l~A~D~~tG--~~lW~~~~~~g~~a~P~~y~~~G~q 542 (582)
T 1flg_A 489 WAGVLATAGNLVFTGTGDGYFKAFDAKSG--KELWKFQTGSGIVSPPITWEQDGEQ 542 (582)
T ss_dssp CSCCEEETTTEEEEECTTSEEEEEETTTC--CEEEEEECSSCCCSCCEEEEETTEE
T ss_pred cccceEeCCCEEEEECCCCcEEEEECCCC--CEEEEecCCCCcccCceEEEECCEE
Confidence 11223446788888999999999998877 6666665433221 22666677763
No 256
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=98.68 E-value=2.6e-05 Score=60.35 Aligned_cols=188 Identities=10% Similarity=0.021 Sum_probs=114.1
Q ss_pred CCEeEEEEcCCCCEEEEEeCC--CcEEEEEccCCeEEEEeecCCCc-eEEEEeCCCCeEEEEcCCCeEEEEEcCCCCCCc
Q 047325 155 DAVSCMSLDQDCGLLYTASWD--RTFKVWRISDSKCLESVSAHDDA-VNSVVSSSEGLIFTGSADGTVKVWKREQHGKGT 231 (368)
Q Consensus 155 ~~v~~~~~~~~~~~l~~~~~d--~~i~iwd~~~~~~~~~~~~~~~~-v~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~ 231 (368)
.....+.|++ +.++.+.+.+ +.|+.+|+.+++.+..+...... --.++...+......-.++.+.++|.++..
T Consensus 21 ~ftqGL~~~~-~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~~fgeGi~~~~~~ly~ltw~~~~v~v~D~~tl~--- 96 (243)
T 3mbr_X 21 AFTEGLFYLR-GHLYESTGETGRSSVRKVDLETGRILQRAEVPPPYFGAGIVAWRDRLIQLTWRNHEGFVYDLATLT--- 96 (243)
T ss_dssp CCEEEEEEET-TEEEEEECCTTSCEEEEEETTTCCEEEEEECCTTCCEEEEEEETTEEEEEESSSSEEEEEETTTTE---
T ss_pred cccccEEEEC-CEEEEECCCCCCceEEEEECCCCCEEEEEeCCCCcceeEEEEeCCEEEEEEeeCCEEEEEECCcCc---
Confidence 3466899986 4555555654 48999999999999888654332 133444444355556678999999998653
Q ss_pred ccccceeeccccccEEEEEEcCCCCEEEEecCCCcEEEEeCCCccccceeeec-cceE---EEEEEe-CCCEEEEeeCCC
Q 047325 232 KHSLAQTLLKQECAVTALVVSSSRSIVYCGSSDGLVNFWEREKQLSHGGVLKG-HKLA---VLCLAA-AGKLVFSGSADK 306 (368)
Q Consensus 232 ~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~-~~~~---~~~~~~-~~~~l~~~~~dg 306 (368)
....+.....+ ..++ +++..|+.+..++.|.++|.++.+........ +... +..+.+ ++++.+....+.
T Consensus 97 ---~~~ti~~~~~G-wglt--~dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V~~~g~~~~~lNeLe~~~G~lyanvw~s~ 170 (243)
T 3mbr_X 97 ---PRARFRYPGEG-WALT--SDDSHLYMSDGTAVIRKLDPDTLQQVGSIKVTAGGRPLDNLNELEWVNGELLANVWLTS 170 (243)
T ss_dssp ---EEEEEECSSCC-CEEE--ECSSCEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEETTEEEEEETTTT
T ss_pred ---EEEEEeCCCCc-eEEe--eCCCEEEEECCCCeEEEEeCCCCeEEEEEEEccCCcccccceeeEEeCCEEEEEECCCC
Confidence 23333322222 3343 46777777777899999999886655333221 2222 223334 565555554677
Q ss_pred eEEEEecCCCceeeeEeeec-------------cccCeeEEEEecCCeee-ecCCcceEEEE
Q 047325 307 TICVWRRDGAIHTCLSVLTG-------------HTGPVKCLAVEEDRDSS-SSTSSCAQRWI 354 (368)
Q Consensus 307 ~i~iw~~~~~~~~~~~~~~~-------------h~~~v~~l~~~~~~~~~-~~~~~~~~~w~ 354 (368)
.|.+.|..++ +.+..+.- -..-.+.|+++|++..+ +++-.-.++|.
T Consensus 171 ~I~vIDp~tG--~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTGK~wp~~~~ 230 (243)
T 3mbr_X 171 RIARIDPASG--KVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTGKRWPMLYE 230 (243)
T ss_dssp EEEEECTTTC--BEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEETTCSEEEE
T ss_pred eEEEEECCCC--CEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEECCCCCcEEE
Confidence 8999988776 44444431 11356899999976643 33333344443
No 257
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=98.67 E-value=1.9e-05 Score=69.21 Aligned_cols=149 Identities=13% Similarity=0.008 Sum_probs=91.8
Q ss_pred cEEEEEccC--CeE-EEEeecCCCceEEEEeCCCC--eEEEEcCCCeEEEEEcCCCC-----CCcccccceeeccccccE
Q 047325 177 TFKVWRISD--SKC-LESVSAHDDAVNSVVSSSEG--LIFTGSADGTVKVWKREQHG-----KGTKHSLAQTLLKQECAV 246 (368)
Q Consensus 177 ~i~iwd~~~--~~~-~~~~~~~~~~v~~~~~~~~~--~l~~~~~dg~i~i~d~~~~~-----~~~~~~~~~~~~~~~~~i 246 (368)
.|.+.|..+ ++. +..+... ....++.++||| .++++..+.+|.++|+.... +............-....
T Consensus 255 ~V~VID~~~~~~~~~~~~Ipvg-~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~vG~gP 333 (595)
T 1fwx_A 255 GVKVVDGRKEASSLFTRYIPIA-NNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPELGLGP 333 (595)
T ss_dssp TEEEEECSGGGCCSSEEEEEEE-SSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECCBCCSCE
T ss_pred cEEEEeCcccCCceeEEEEecC-CCceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccceEEEcCCCCCc
Confidence 488888877 444 4555433 345688999999 45555668999999998431 000001111122334567
Q ss_pred EEEEEcCCCCEEEEecCCCcEEEEeCCCc---------cccceeeeccceE--E-----EEEEeCCCEEEEeeC---CCe
Q 047325 247 TALVVSSSRSIVYCGSSDGLVNFWEREKQ---------LSHGGVLKGHKLA--V-----LCLAAAGKLVFSGSA---DKT 307 (368)
Q Consensus 247 ~~~~~~~~~~~l~~~~~dg~i~i~d~~~~---------~~~~~~~~~~~~~--~-----~~~~~~~~~l~~~~~---dg~ 307 (368)
..++|+|+|...++...|+.|.+||+... ......+..|..+ . ..+++||++|+++.. |+.
T Consensus 334 ~h~aF~~dG~aY~t~~ldsqV~kwdi~~a~~~~~g~~~~~vi~kidV~yqpGh~~~~~g~t~~~DGk~l~~~Nk~skdr~ 413 (595)
T 1fwx_A 334 LHTAFDGRGNAYTSLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVHYQPGHLKTVMGETLDATNDWLVCLSKFSKDRF 413 (595)
T ss_dssp EEEEECTTSEEEEEETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEECSSCEEEEEETTTTSTTCCSSEEEEEESCCTTSS
T ss_pred ceEEECCCCeEEEEEecCCcEEEEEhhHhhhhhcccccceeEEEeecccccccceeccceEeCCCCCEEEEcCCCCcccc
Confidence 88999999955556778999999998762 1122233333222 1 123578999998754 432
Q ss_pred ----------EEEEecCCCceeeeEeeec
Q 047325 308 ----------ICVWRRDGAIHTCLSVLTG 326 (368)
Q Consensus 308 ----------i~iw~~~~~~~~~~~~~~~ 326 (368)
-.++|+...+.+.+.....
T Consensus 414 ~~~gp~~~~~~ql~dis~~~m~lv~d~p~ 442 (595)
T 1fwx_A 414 LNVGPLKPENDQLIDISGDKMVLVHDGPT 442 (595)
T ss_dssp CCCCSSCCEEEEEEECSSSSCEEEEEEEE
T ss_pred ccCCCCCCCcceEEEcCCCcEEEEEEEcC
Confidence 1889997766666655543
No 258
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=98.67 E-value=2.4e-05 Score=61.87 Aligned_cols=190 Identities=7% Similarity=0.024 Sum_probs=118.5
Q ss_pred eeEEEEeC-CEEEEEeC---CCeEEEEeecCCCccccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEE
Q 047325 85 VKAIVISG-EKIFTGHQ---DGKIRVWKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCM 160 (368)
Q Consensus 85 v~~~~~~~-~~l~s~~~---dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 160 (368)
...+.+++ ..|+.++. ++.|++.|+.+++......... ......+
T Consensus 23 ~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~-------------------------------~~fgeGi 71 (266)
T 2iwa_A 23 TQGLVYAENDTLFESTGLYGRSSVRQVALQTGKVENIHKMDD-------------------------------SYFGEGL 71 (266)
T ss_dssp EEEEEECSTTEEEEEECSTTTCEEEEEETTTCCEEEEEECCT-------------------------------TCCEEEE
T ss_pred cccEEEeCCCeEEEECCCCCCCEEEEEECCCCCEEEEEecCC-------------------------------CcceEEE
Confidence 46788874 56666543 5789999998887544332211 1111234
Q ss_pred EEcCCCCEEEEE-eCCCcEEEEEccCCeEEEEeecCCCceEEEEeCCCC-eEEEEcCCCeEEEEEcCCCCCCccccccee
Q 047325 161 SLDQDCGLLYTA-SWDRTFKVWRISDSKCLESVSAHDDAVNSVVSSSEG-LIFTGSADGTVKVWKREQHGKGTKHSLAQT 238 (368)
Q Consensus 161 ~~~~~~~~l~~~-~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~ 238 (368)
++. ++.|+.+ -.++.+.++|..+.+.+.++......-..++ +++ .++++..++.|.++|..+... ...
T Consensus 72 ~~~--g~~lyv~t~~~~~v~viD~~t~~v~~~i~~g~~~g~glt--~Dg~~l~vs~gs~~l~viD~~t~~v------~~~ 141 (266)
T 2iwa_A 72 TLL--NEKLYQVVWLKNIGFIYDRRTLSNIKNFTHQMKDGWGLA--TDGKILYGSDGTSILYEIDPHTFKL------IKK 141 (266)
T ss_dssp EEE--TTEEEEEETTCSEEEEEETTTTEEEEEEECCSSSCCEEE--ECSSSEEEECSSSEEEEECTTTCCE------EEE
T ss_pred EEe--CCEEEEEEecCCEEEEEECCCCcEEEEEECCCCCeEEEE--ECCCEEEEECCCCeEEEEECCCCcE------EEE
Confidence 554 3455444 4578999999999999998864312223344 455 566666788999999976532 222
Q ss_pred ecc-----ccccEEEEEEcCCCCEEEEecCCCcEEEEeCCCccccceeeec--------------cceEEEEEEeCCC-E
Q 047325 239 LLK-----QECAVTALVVSSSRSIVYCGSSDGLVNFWEREKQLSHGGVLKG--------------HKLAVLCLAAAGK-L 298 (368)
Q Consensus 239 ~~~-----~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~--------------~~~~~~~~~~~~~-~ 298 (368)
+.- .-..++.+.|. ++...+....++.|.+.|..+++.......+ ....-++++++++ +
T Consensus 142 I~Vg~~~~p~~~~nele~~-dg~lyvn~~~~~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~l 220 (266)
T 2iwa_A 142 HNVKYNGHRVIRLNELEYI-NGEVWANIWQTDCIARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRI 220 (266)
T ss_dssp EECEETTEECCCEEEEEEE-TTEEEEEETTSSEEEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEE
T ss_pred EEECCCCcccccceeEEEE-CCEEEEecCCCCeEEEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEE
Confidence 221 11236677887 6655555556789999999987765433321 0113467778765 5
Q ss_pred EEEeeCCCeEEEEecCCC
Q 047325 299 VFSGSADKTICVWRRDGA 316 (368)
Q Consensus 299 l~~~~~dg~i~iw~~~~~ 316 (368)
++++...+.|.+.++...
T Consensus 221 fVTgk~~~~v~~i~l~~~ 238 (266)
T 2iwa_A 221 FVTGKLWPKLFEIKLHLV 238 (266)
T ss_dssp EEEETTCSEEEEEEEEEC
T ss_pred EEECCCCCeEEEEEEecc
Confidence 566667888988877543
No 259
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=98.66 E-value=1.7e-06 Score=67.52 Aligned_cols=191 Identities=9% Similarity=0.114 Sum_probs=118.7
Q ss_pred ceeeeccCcCCc--EEEEEecCC-EEEEccCCCcEEEEcCCcc--eecccCCCCCeeEEEEeCCEEEEE-eCCCeEEEEe
Q 047325 35 GLIGSLVREEGH--IYSLAASKD-LLYTGSDSKNIRVWKNLKE--FCGFKASSGLVKAIVISGEKIFTG-HQDGKIRVWK 108 (368)
Q Consensus 35 ~~~~~~~~h~~~--i~~~~~~~~-~l~s~~~dg~i~iw~~~~~--~~~~~~~~~~v~~~~~~~~~l~s~-~~dg~i~vw~ 108 (368)
+++.++ .|... ...|.|+++ +..+.+.+|.|+++|+.+. +.........-..+.+.++.|+.. -.++.+.+||
T Consensus 44 ~Vv~~~-phd~~~ftqGL~~~~~~Ly~stG~~g~v~~iD~~Tgkv~~~~l~~~~FgeGit~~g~~Ly~ltw~~~~v~V~D 122 (268)
T 3nok_A 44 HIIREY-PHATNAFTQGLVFHQGHFFESTGHQGTLRQLSLESAQPVWMERLGNIFAEGLASDGERLYQLTWTEGLLFTWS 122 (268)
T ss_dssp EEEEEE-ECCTTCCEEEEEEETTEEEEEETTTTEEEECCSSCSSCSEEEECTTCCEEEEEECSSCEEEEESSSCEEEEEE
T ss_pred EEEEEE-cCCCccccceEEEECCEEEEEcCCCCEEEEEECCCCcEEeEECCCCcceeEEEEeCCEEEEEEccCCEEEEEE
Confidence 566666 45433 578899877 6677788899999998743 222211111223477776655554 4688999999
Q ss_pred ecCCCccccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcCCCCEEEEEeCCCcEEEEEccCCeE
Q 047325 109 ISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCGLLYTASWDRTFKVWRISDSKC 188 (368)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~ 188 (368)
.++.+........ ..-..++ ++++.|+.+..++.|.++|..+.+.
T Consensus 123 ~~Tl~~~~ti~~~---------------------------------~eGwGLt--~Dg~~L~vSdGs~~l~~iDp~T~~v 167 (268)
T 3nok_A 123 GMPPQRERTTRYS---------------------------------GEGWGLC--YWNGKLVRSDGGTMLTFHEPDGFAL 167 (268)
T ss_dssp TTTTEEEEEEECS---------------------------------SCCCCEE--EETTEEEEECSSSEEEEECTTTCCE
T ss_pred CCcCcEEEEEeCC---------------------------------CceeEEe--cCCCEEEEECCCCEEEEEcCCCCeE
Confidence 9887754433321 1112333 4577788777789999999999998
Q ss_pred EEEeecC--C---CceEEEEeCCCCeEEEE-cCCCeEEEEEcCCCCCCccccccee-------eccccccEEEEEEcCCC
Q 047325 189 LESVSAH--D---DAVNSVVSSSEGLIFTG-SADGTVKVWKREQHGKGTKHSLAQT-------LLKQECAVTALVVSSSR 255 (368)
Q Consensus 189 ~~~~~~~--~---~~v~~~~~~~~~~l~~~-~~dg~i~i~d~~~~~~~~~~~~~~~-------~~~~~~~i~~~~~~~~~ 255 (368)
+..+... . ..++.+.|. +|.|++. -.+..|.+.|.+++........... ......-.+.|+++|++
T Consensus 168 ~~~I~V~~~g~~v~~lNeLe~~-dG~lyanvw~s~~I~vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~ 246 (268)
T 3nok_A 168 VGAVQVKLRGQPVELINELECA-NGVIYANIWHSSDVLEIDPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGS 246 (268)
T ss_dssp EEEEECEETTEECCCEEEEEEE-TTEEEEEETTCSEEEEECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTT
T ss_pred EEEEEeCCCCcccccccccEEe-CCEEEEEECCCCeEEEEeCCCCcEEEEEECCCCcccccccccCcCCceEEEEEcCCC
Confidence 8877642 2 234667776 5644444 4688999999987643111111000 01122467999999976
Q ss_pred CEEEEec
Q 047325 256 SIVYCGS 262 (368)
Q Consensus 256 ~~l~~~~ 262 (368)
+.|+..+
T Consensus 247 ~rlfVTG 253 (268)
T 3nok_A 247 GRIFMTG 253 (268)
T ss_dssp CCEEEEE
T ss_pred CEEEEeC
Confidence 6555443
No 260
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=98.65 E-value=7.3e-06 Score=73.19 Aligned_cols=197 Identities=8% Similarity=-0.007 Sum_probs=109.1
Q ss_pred cCCEEEEccC-CCcEEEEcC-Cccee--cccCCCC-----------CeeEEEEeCCEEEEEeCCCeEEEEeecCCCcccc
Q 047325 53 SKDLLYTGSD-SKNIRVWKN-LKEFC--GFKASSG-----------LVKAIVISGEKIFTGHQDGKIRVWKISPKNQSVH 117 (368)
Q Consensus 53 ~~~~l~s~~~-dg~i~iw~~-~~~~~--~~~~~~~-----------~v~~~~~~~~~l~s~~~dg~i~vw~~~~~~~~~~ 117 (368)
.++.++.++. ++.|.-+|. .+... .+..... ....+...+..++.++.|+.+..+|..+++....
T Consensus 61 ~~g~vyv~~~~~~~v~AlD~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~dg~l~alD~~tG~~~W~ 140 (571)
T 2ad6_A 61 IGDMMYVHSAFPNNTYALNLNDPGKIVWQHKPKQDASTKAVMCCDVVDRGLAYGAGQIVKKQANGHLLALDAKTGKINWE 140 (571)
T ss_dssp ETTEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCTTCSCCCCCEEETTEEEEECTTSEEEEEETTTCCEEEE
T ss_pred ECCEEEEEeCCCCEEEEEeCCCCccEEEEEcCCCCccccccccccccccccEEECCEEEEEeCCCEEEEEECCCCCEEEE
Confidence 3556666666 788888887 54322 2211110 0123455688999999999999999999987654
Q ss_pred ccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcCCCCEEEEEeC------CCcEEEEEccCCeEEEE
Q 047325 118 KRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCGLLYTASW------DRTFKVWRISDSKCLES 191 (368)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~------d~~i~iwd~~~~~~~~~ 191 (368)
......... +.-...++ .. +..+++++. ++.|..+|..+|+.+-+
T Consensus 141 ~~~~~~~~~-----------------------~~~~~~P~----v~--~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~ 191 (571)
T 2ad6_A 141 VEVCDPKVG-----------------------STLTQAPF----VA--KDTVLMGCSGAELGVRGAVNAFDLKTGELKWR 191 (571)
T ss_dssp EECCCGGGT-----------------------CBCCSCCE----EE--TTEEEEECBCGGGTCCCEEEEEETTTCCEEEE
T ss_pred ecCCCCCcc-----------------------ceeccCCE----EE--CCEEEEEecCCccCCCCEEEEEECCCCcEEEE
Confidence 433210000 00011111 11 235666654 78999999999998877
Q ss_pred eecCCCc-------------------------------------e-EEEEeCCC-CeEEEEcCC----------------
Q 047325 192 VSAHDDA-------------------------------------V-NSVVSSSE-GLIFTGSAD---------------- 216 (368)
Q Consensus 192 ~~~~~~~-------------------------------------v-~~~~~~~~-~~l~~~~~d---------------- 216 (368)
+...... + ..+++.++ +.++.+..+
T Consensus 192 ~~~~~~~~~~~~~p~~~~~~~~~G~~~~g~~~w~~~~~~~gg~~~w~~~a~d~~~g~vy~~~g~~~~~~~~~~~gd~~y~ 271 (571)
T 2ad6_A 192 AFATGSDDSVRLAKDFNSANPHYGQFGLGTKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGSGNPAPWNETMRPGDNKWT 271 (571)
T ss_dssp EESSSCHHHHTBCTTTTTTCGGGCCSSHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTT
T ss_pred EccCCCccccccCcccccccccccccccccccCcccceecCCCCeeeeEEEcCCCCeEEEECCCCccccCCccCCCceeE
Confidence 6532211 0 11334443 355555432
Q ss_pred CeEEEEEcCCCCCCcccccce----eeccccccEEEEEEcCCCC---EEEEecCCCcEEEEeCCCccccc
Q 047325 217 GTVKVWKREQHGKGTKHSLAQ----TLLKQECAVTALVVSSSRS---IVYCGSSDGLVNFWEREKQLSHG 279 (368)
Q Consensus 217 g~i~i~d~~~~~~~~~~~~~~----~~~~~~~~i~~~~~~~~~~---~l~~~~~dg~i~i~d~~~~~~~~ 279 (368)
+.|..+|.++++.....+... .......++. +...++++ .++.++.+|.++++|.++++.+.
T Consensus 272 ~~v~Ald~~tG~~~W~~~~~~~d~~d~~~~~~p~l-~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~~w 340 (571)
T 2ad6_A 272 MTIWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMVL-TDQPVNGKMTPLLSHIDRNGILYTLNRENGNLIV 340 (571)
T ss_dssp TEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEE-EEEEETTEEEEEEEEECTTSEEEEEETTTCCEEE
T ss_pred EEEEEEecCCCcEEEEecCCCCcccccccCCCCEE-EecccCCcEEEEEEEeCCCcEEEEEECCCCCEEe
Confidence 368889988764311111100 0001112222 22234663 57788899999999998876543
No 261
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=98.65 E-value=9.2e-06 Score=63.48 Aligned_cols=193 Identities=10% Similarity=0.050 Sum_probs=119.0
Q ss_pred CceeeeccCcCCc--EEEEEecCC-EEEEccCCC--cEEEEcCCcc--eecccCCCC-CeeEEEEeCCEEEEEe-CCCeE
Q 047325 34 NGLIGSLVREEGH--IYSLAASKD-LLYTGSDSK--NIRVWKNLKE--FCGFKASSG-LVKAIVISGEKIFTGH-QDGKI 104 (368)
Q Consensus 34 ~~~~~~~~~h~~~--i~~~~~~~~-~l~s~~~dg--~i~iw~~~~~--~~~~~~~~~-~v~~~~~~~~~l~s~~-~dg~i 104 (368)
.+++.++ .|... ...|.|+++ ++.+.+.+| .|+++|+.+. +........ .-..+.+.++.|+... .++.+
T Consensus 31 ~~vv~~~-phd~~~ftqGL~~~~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~~~FgeGit~~g~~ly~ltw~~~~v 109 (262)
T 3nol_A 31 YQIVHSY-PHDTKAFTEGFFYRNGYFYESTGLNGRSSIRKVDIESGKTLQQIELGKRYFGEGISDWKDKIVGLTWKNGLG 109 (262)
T ss_dssp EEEEEEE-ECCTTCEEEEEEEETTEEEEEEEETTEEEEEEECTTTCCEEEEEECCTTCCEEEEEEETTEEEEEESSSSEE
T ss_pred eEEEEEe-cCCCCcccceEEEECCEEEEECCCCCCceEEEEECCCCcEEEEEecCCccceeEEEEeCCEEEEEEeeCCEE
Confidence 4556666 44433 577888766 555666665 8999998754 223322222 2244777777776665 48899
Q ss_pred EEEeecCCCccccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcCCCCEEEEEeCCCcEEEEEcc
Q 047325 105 RVWKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCGLLYTASWDRTFKVWRIS 184 (368)
Q Consensus 105 ~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~ 184 (368)
.++|.++.+........ . ....+.++++.|+.+..++.|.++|..
T Consensus 110 ~v~D~~t~~~~~ti~~~---------------------------------~--eG~glt~dg~~L~~SdGs~~i~~iDp~ 154 (262)
T 3nol_A 110 FVWNIRNLRQVRSFNYD---------------------------------G--EGWGLTHNDQYLIMSDGTPVLRFLDPE 154 (262)
T ss_dssp EEEETTTCCEEEEEECS---------------------------------S--CCCCEEECSSCEEECCSSSEEEEECTT
T ss_pred EEEECccCcEEEEEECC---------------------------------C--CceEEecCCCEEEEECCCCeEEEEcCC
Confidence 99999988754443321 1 112233466777776667889999999
Q ss_pred CCeEEEEeecC--C---CceEEEEeCCCCeEEEE-cCCCeEEEEEcCCCCCCccccccee------eccccccEEEEEEc
Q 047325 185 DSKCLESVSAH--D---DAVNSVVSSSEGLIFTG-SADGTVKVWKREQHGKGTKHSLAQT------LLKQECAVTALVVS 252 (368)
Q Consensus 185 ~~~~~~~~~~~--~---~~v~~~~~~~~~~l~~~-~~dg~i~i~d~~~~~~~~~~~~~~~------~~~~~~~i~~~~~~ 252 (368)
+.+.+..+... . ..++.+.+. +|.+++. -.+..|.+.|.+++........... ........+.|+++
T Consensus 155 T~~v~~~I~V~~~g~~~~~lNELe~~-~G~lyan~w~~~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~d 233 (262)
T 3nol_A 155 SLTPVRTITVTAHGEELPELNELEWV-DGEIFANVWQTNKIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWD 233 (262)
T ss_dssp TCSEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTSSEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEE
T ss_pred CCeEEEEEEeccCCccccccceeEEE-CCEEEEEEccCCeEEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEc
Confidence 99988877642 2 334557776 5644444 4688999999987643111111000 01123467999999
Q ss_pred CCCCEEEEecC
Q 047325 253 SSRSIVYCGSS 263 (368)
Q Consensus 253 ~~~~~l~~~~~ 263 (368)
|+++.|+..+.
T Consensus 234 p~~~~lfVTGK 244 (262)
T 3nol_A 234 KEHHRLFVTGK 244 (262)
T ss_dssp TTTTEEEEEET
T ss_pred CCCCEEEEECC
Confidence 98887766654
No 262
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=98.63 E-value=2.2e-05 Score=61.66 Aligned_cols=200 Identities=7% Similarity=0.073 Sum_probs=123.2
Q ss_pred ecCCCEeEEEEcCCCCEEE-EEeCCCcEEEEEccCCeEEEEeecC-CCceEEEEeCCCC-eEEEEcCCCeEEEEEcCCCC
Q 047325 152 RHSDAVSCMSLDQDCGLLY-TASWDRTFKVWRISDSKCLESVSAH-DDAVNSVVSSSEG-LIFTGSADGTVKVWKREQHG 228 (368)
Q Consensus 152 ~~~~~v~~~~~~~~~~~l~-~~~~d~~i~iwd~~~~~~~~~~~~~-~~~v~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~ 228 (368)
+-.+.+..++++|+++.|+ +...++.|...|+. ++.+..+.-. ....-.+++.+++ ++++.-.++.+.++++....
T Consensus 24 g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~g~~D~EGIa~~~~g~~~vs~E~~~~l~~~~v~~~~ 102 (255)
T 3qqz_A 24 GITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPLDFVKDLETIEYIGDNQFVISDERDYAIYVISLTPNS 102 (255)
T ss_dssp TCCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEECSSCSSEEEEEECSTTEEEEEETTTTEEEEEEECTTC
T ss_pred CcccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEecCCCCChHHeEEeCCCEEEEEECCCCcEEEEEcCCCC
Confidence 3456799999999766555 56778899999987 8888777532 2457788888888 44555567899999887553
Q ss_pred CCcccccce-e--eccccccEEEEEEcCCCCEEEEecCCCcEEEEeCCC---ccccceee---------eccceEEEEEE
Q 047325 229 KGTKHSLAQ-T--LLKQECAVTALVVSSSRSIVYCGSSDGLVNFWEREK---QLSHGGVL---------KGHKLAVLCLA 293 (368)
Q Consensus 229 ~~~~~~~~~-~--~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~---~~~~~~~~---------~~~~~~~~~~~ 293 (368)
......... . ..........++++|.++.|+++.+.....+|.++. .... ... .......+++.
T Consensus 103 ~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~~~l-~i~~~~~~~~~~~~~d~S~l~~d 181 (255)
T 3qqz_A 103 EVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSNEL-HISKDKALQRQFTLDDVSGAEFN 181 (255)
T ss_dssp CEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCSSCC-EEEECHHHHHTCCSSCCCEEEEE
T ss_pred eeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEcccccCCce-eeecchhhccccccCCceeEEEc
Confidence 210001110 0 112345578999999998888877766556655541 0001 111 01122345666
Q ss_pred eC-CCEEEEeeCCCeEEEEecCCCceeeeEeee-cc------ccCeeEEEEecCCeeeecCCcceEEEEE
Q 047325 294 AA-GKLVFSGSADKTICVWRRDGAIHTCLSVLT-GH------TGPVKCLAVEEDRDSSSSTSSCAQRWIV 355 (368)
Q Consensus 294 ~~-~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~-~h------~~~v~~l~~~~~~~~~~~~~~~~~~w~l 355 (368)
|. +++++.......|.++|.... ......+. +. -.....|+|.++|....++.. +.+|.+
T Consensus 182 p~tg~lliLS~~s~~L~~~d~~g~-~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~lyIvsE~-n~~y~f 249 (255)
T 3qqz_A 182 QQKNTLLVLSHESRALQEVTLVGE-VIGEMSLTKGSRGLSHNIKQAEGVAMDASGNIYIVSEP-NRFYRF 249 (255)
T ss_dssp TTTTEEEEEETTTTEEEEECTTCC-EEEEEECSTTGGGCSSCCCSEEEEEECTTCCEEEEETT-TEEEEE
T ss_pred CCCCeEEEEECCCCeEEEEcCCCC-EEEEEEcCCccCCcccccCCCCeeEECCCCCEEEEcCC-ceEEEE
Confidence 64 567777777888999987654 22233333 22 125789999999985444322 344443
No 263
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=98.57 E-value=0.00015 Score=61.40 Aligned_cols=246 Identities=10% Similarity=0.042 Sum_probs=134.6
Q ss_pred EEEEecCC-EEEEccCCCcEEEEcCCcc-eecccCCCCCeeEEEEe--CCEEEEE-eCCCeEEEEeecCCCccccccCCc
Q 047325 48 YSLAASKD-LLYTGSDSKNIRVWKNLKE-FCGFKASSGLVKAIVIS--GEKIFTG-HQDGKIRVWKISPKNQSVHKRAGT 122 (368)
Q Consensus 48 ~~~~~~~~-~l~s~~~dg~i~iw~~~~~-~~~~~~~~~~v~~~~~~--~~~l~s~-~~dg~i~vw~~~~~~~~~~~~~~~ 122 (368)
.|.+..++ +|+.+. ...|+..++... ...+........+++|+ ++.|+.+ ...+.|..++++..........
T Consensus 80 ~C~~~~~~~~l~~~~-~~~I~~i~~~~~~~~~~~~~~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~-- 156 (386)
T 3v65_B 80 SCKALGPEPVLLFAN-RIDIRQVLPHRSEYTLLLNNLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVST-- 156 (386)
T ss_dssp CEEECSSCCEEEEEC-BSCEEEECTTSCCCEEEECSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEEEEECS--
T ss_pred eECCccccceeEeec-CccceeeccCCCcEEEEecCCCccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcEEEEeC--
Confidence 34444433 443333 356777777643 22222334457788887 4555544 4577888888776532111100
Q ss_pred cccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcCCCCEE-EEEeCCCcEEEEEccCCeEEEEeecCCCceEE
Q 047325 123 LPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCGLL-YTASWDRTFKVWRISDSKCLESVSAHDDAVNS 201 (368)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~ 201 (368)
.......+++.+.+..| ++-...+.|.+.++........+.........
T Consensus 157 ------------------------------~~~~p~glavd~~~g~lY~~d~~~~~I~~~~~dg~~~~~l~~~~l~~P~g 206 (386)
T 3v65_B 157 ------------------------------GLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRA 206 (386)
T ss_dssp ------------------------------SCSCCCCEEEETTTTEEEEEETTTTEEEECBTTSCSCEEEECSSCSCEEE
T ss_pred ------------------------------CCCCccEEEEEeCCCeEEEEcCCCCeEEEEeCCCCceEEeecCCCCCCcE
Confidence 11234568888755544 44445678888888654433333333456788
Q ss_pred EEeCCCC-eEE-EEcCC-CeEEEEEcCCCCCCcccccceeeccccccEEEEEEcCCCCEEE-EecCCCcEEEEeCCCccc
Q 047325 202 VVSSSEG-LIF-TGSAD-GTVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSSSRSIVY-CGSSDGLVNFWEREKQLS 277 (368)
Q Consensus 202 ~~~~~~~-~l~-~~~~d-g~i~i~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~-~~~~dg~i~i~d~~~~~~ 277 (368)
+++.|.+ .|+ +-... +.|..+++..... .......-.....++++|++..|+ +-...+.|..+|+.....
T Consensus 207 iavdp~~g~ly~td~~~~~~I~r~~~dG~~~------~~~~~~~~~~PnGlavd~~~~~lY~aD~~~~~I~~~d~dG~~~ 280 (386)
T 3v65_B 207 IALHPMEGTIYWTDWGNTPRIEASSMDGSGR------RIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHR 280 (386)
T ss_dssp EEEETTTTEEEEEECSSSCEEEEEETTSCSC------EEEECSSCSCEEEEEEEGGGTEEEEEETTTTEEEEECTTSCSC
T ss_pred EEEEcCCCeEEEeccCCCCEEEEEeCCCCCc------EEEEECCCCCeeeEEEeCCCCEEEEEECCCCEEEEEeCCCCee
Confidence 9999755 444 43344 7888888764311 111122234578999998666554 445567899999875322
Q ss_pred cceeee---ccceEEEEEEeCCCEEEEeeCCCeEEEEecCCCceeeeEeeeccccCeeEEEEe
Q 047325 278 HGGVLK---GHKLAVLCLAAAGKLVFSGSADKTICVWRRDGAIHTCLSVLTGHTGPVKCLAVE 337 (368)
Q Consensus 278 ~~~~~~---~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~l~~~ 337 (368)
. .... .++.. +++ ..+.++++-...+.|..++..++ .....+........+|++.
T Consensus 281 ~-~~~~~~~~~P~g-iav-~~~~ly~td~~~~~V~~~~~~~G--~~~~~i~~~~~~p~gi~v~ 338 (386)
T 3v65_B 281 K-AVISQGLPHPFA-ITV-FEDSLYWTDWHTKSINSANKFTG--KNQEIIRNKLHFPMDIHTL 338 (386)
T ss_dssp E-EEECSSCSSEEE-EEE-ETTEEEEEETTTTEEEEEETTTC--CSCEEEECSCSCCCCEEEE
T ss_pred E-EEEECCCCCceE-EEE-ECCEEEEeeCCCCeEEEEECCCC--cceEEEccCCCCCceEEEE
Confidence 2 1221 22222 333 45556666667788888874333 2333333333344555543
No 264
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=98.56 E-value=0.00017 Score=58.93 Aligned_cols=223 Identities=13% Similarity=0.091 Sum_probs=122.9
Q ss_pred CCeeEEEEe--CCEEEEEeCCCeEEEEeecCCCccccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEE
Q 047325 83 GLVKAIVIS--GEKIFTGHQDGKIRVWKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCM 160 (368)
Q Consensus 83 ~~v~~~~~~--~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 160 (368)
.....++++ ++.+++-..++.|..||.+.... .. .........+
T Consensus 32 ~~pegia~~~~g~lyv~d~~~~~I~~~d~~g~~~-~~---------------------------------~~~~~~p~gi 77 (306)
T 2p4o_A 32 TFLENLASAPDGTIFVTNHEVGEIVSITPDGNQQ-IH---------------------------------ATVEGKVSGL 77 (306)
T ss_dssp CCEEEEEECTTSCEEEEETTTTEEEEECTTCCEE-EE---------------------------------EECSSEEEEE
T ss_pred CCcceEEECCCCCEEEEeCCCCeEEEECCCCceE-EE---------------------------------EeCCCCceeE
Confidence 345677776 55455555778888887654311 00 0022357789
Q ss_pred EEcCCCCEEEEEeCCC--cEEEEEccCCeEEEEeec-CCCceEEEEeCCCCe-EEEEcCCCeEEEEEcCCCCCCcc--cc
Q 047325 161 SLDQDCGLLYTASWDR--TFKVWRISDSKCLESVSA-HDDAVNSVVSSSEGL-IFTGSADGTVKVWKREQHGKGTK--HS 234 (368)
Q Consensus 161 ~~~~~~~~l~~~~~d~--~i~iwd~~~~~~~~~~~~-~~~~v~~~~~~~~~~-l~~~~~dg~i~i~d~~~~~~~~~--~~ 234 (368)
++.++++++++..... .|..+|..+++....... .......++..+++. +++-..++.|..+|......... ..
T Consensus 78 a~~~dG~l~vad~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~ 157 (306)
T 2p4o_A 78 AFTSNGDLVATGWNADSIPVVSLVKSDGTVETLLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHP 157 (306)
T ss_dssp EECTTSCEEEEEECTTSCEEEEEECTTSCEEEEEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECG
T ss_pred EEcCCCcEEEEeccCCcceEEEEcCCCCeEEEEEeCCCccccCcccccCCCcEEEEECCCCeEEEEeCCCCcEeEEEECC
Confidence 9999998665554322 477778777775433321 122334555555664 44444688999998754210000 00
Q ss_pred cce--eeccccccEEEEEEcCCCCEEE-EecCCCcEEEEeCCC-cccc-ceeee-ccceEEEEEEeCCCEEEEeeCCCeE
Q 047325 235 LAQ--TLLKQECAVTALVVSSSRSIVY-CGSSDGLVNFWEREK-QLSH-GGVLK-GHKLAVLCLAAAGKLVFSGSADKTI 308 (368)
Q Consensus 235 ~~~--~~~~~~~~i~~~~~~~~~~~l~-~~~~dg~i~i~d~~~-~~~~-~~~~~-~~~~~~~~~~~~~~~l~~~~~dg~i 308 (368)
... .....-.....+ +|+++.|+ +-...+.|..|++.. +... ...+. .....-++++++|+++++....+.|
T Consensus 158 ~~~~~~~~~~~~~pngi--s~dg~~lyv~d~~~~~I~~~~~~~~g~~~~~~~~~~~~~P~gi~vd~dG~l~va~~~~~~V 235 (306)
T 2p4o_A 158 MLARSNSESVFPAANGL--KRFGNFLYVSNTEKMLLLRIPVDSTDKPGEPEIFVEQTNIDDFAFDVEGNLYGATHIYNSV 235 (306)
T ss_dssp GGSCSSTTCCSCSEEEE--EEETTEEEEEETTTTEEEEEEBCTTSCBCCCEEEEESCCCSSEEEBTTCCEEEECBTTCCE
T ss_pred ccccccccCCCCcCCCc--CcCCCEEEEEeCCCCEEEEEEeCCCCCCCccEEEeccCCCCCeEECCCCCEEEEeCCCCeE
Confidence 000 000111234445 77777554 445678899999874 2211 11111 1111226677889888877778899
Q ss_pred EEEecCCCceeeeEeeeccccCeeEEEEe---cCCee
Q 047325 309 CVWRRDGAIHTCLSVLTGHTGPVKCLAVE---EDRDS 342 (368)
Q Consensus 309 ~iw~~~~~~~~~~~~~~~h~~~v~~l~~~---~~~~~ 342 (368)
.+++.+.. ...+..+.......++++|. |++..
T Consensus 236 ~~~~~~G~-~~~~~~~~~~~~~p~~~a~~g~~~d~~~ 271 (306)
T 2p4o_A 236 VRIAPDRS-TTIIAQAEQGVIGSTAVAFGQTEGDCTA 271 (306)
T ss_dssp EEECTTCC-EEEEECGGGTCTTEEEEEECCSTTTTTE
T ss_pred EEECCCCC-EEEEeecccccCCceEEEEecccCCCCE
Confidence 99986532 22232333333568999998 78653
No 265
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=98.56 E-value=0.00022 Score=59.48 Aligned_cols=229 Identities=10% Similarity=0.049 Sum_probs=129.2
Q ss_pred CcEEEEEecCC-EEEEccCCCcEEEEcCCcc-eecccCCCCCeeEEEEe--CCEEEEE-eCCCeEEEEeecCCCcccccc
Q 047325 45 GHIYSLAASKD-LLYTGSDSKNIRVWKNLKE-FCGFKASSGLVKAIVIS--GEKIFTG-HQDGKIRVWKISPKNQSVHKR 119 (368)
Q Consensus 45 ~~i~~~~~~~~-~l~s~~~dg~i~iw~~~~~-~~~~~~~~~~v~~~~~~--~~~l~s~-~~dg~i~vw~~~~~~~~~~~~ 119 (368)
+...|.+..++ +|+.+. ...|+..++... ...+........+++|+ ++.|+.+ ...+.|..++++.........
T Consensus 34 d~~~C~~~~~~~~ll~~~-~~~I~~i~~~g~~~~~~~~~~~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~ 112 (349)
T 3v64_C 34 DRRSCKALGPEPVLLFAN-RIDIRQVLPHRSEYTLLLNNLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVS 112 (349)
T ss_dssp TSSCEEESSSCCEEEEEC-BSCEEEECTTSCCEEEEECSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEC
T ss_pred CCCcccccccCceeEeec-ccceEEEeCCCCeeEEeecCCCceEEEEEeccccEEEEEeccCCceEEEecCCCCceEEEe
Confidence 33456555444 443333 345777776643 22222233457888887 4555544 457888888887654211110
Q ss_pred CCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcCCCCEE-EEEeCCCcEEEEEccCCeEEEEeecCCCc
Q 047325 120 AGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCGLL-YTASWDRTFKVWRISDSKCLESVSAHDDA 198 (368)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~~~d~~i~iwd~~~~~~~~~~~~~~~~ 198 (368)
. .......+++.+.+..| ++-...+.|.+.++........+......
T Consensus 113 ~--------------------------------~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~l~~ 160 (349)
T 3v64_C 113 T--------------------------------GLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEK 160 (349)
T ss_dssp S--------------------------------SCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECTTCSC
T ss_pred C--------------------------------CCCCccEEEEecCCCeEEEEcCCCCeEEEEcCCCCceEEEEeCCCCC
Confidence 0 11234678888755544 44455678999998654433333333456
Q ss_pred eEEEEeCCCC--eEEEEcCC-CeEEEEEcCCCCCCcccccceeeccccccEEEEEEcCCCCEEEE-ecCCCcEEEEeCCC
Q 047325 199 VNSVVSSSEG--LIFTGSAD-GTVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSSSRSIVYC-GSSDGLVNFWEREK 274 (368)
Q Consensus 199 v~~~~~~~~~--~l~~~~~d-g~i~i~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~-~~~dg~i~i~d~~~ 274 (368)
...+++.|.+ ++++-... +.|...++..... .......-.....++++|++..|+. -...+.|..+|+..
T Consensus 161 P~~iavdp~~g~ly~td~~~~~~I~r~~~dG~~~------~~~~~~~~~~PnGla~d~~~~~lY~aD~~~~~I~~~~~dG 234 (349)
T 3v64_C 161 PRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGR------RIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDG 234 (349)
T ss_dssp EEEEEEETTTTEEEEEECSSSCEEEEEETTSCSC------EESCCSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred cceEEEecCcCeEEEeccCCCCEEEEEeCCCCCc------EEEEECCCCCcceEEEeCCCCEEEEEECCCCEEEEEeCCC
Confidence 7899999854 44444444 7888888764311 1111122345789999986665554 44567899999875
Q ss_pred ccccceee---eccceEEEEEEeCCCEEEEeeCCCeEEEEecCC
Q 047325 275 QLSHGGVL---KGHKLAVLCLAAAGKLVFSGSADKTICVWRRDG 315 (368)
Q Consensus 275 ~~~~~~~~---~~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~ 315 (368)
.... ... ..++.. +++ ..+.++++-...+.|..++..+
T Consensus 235 ~~~~-~~~~~~~~~P~g-iav-~~~~ly~td~~~~~V~~~~~~~ 275 (349)
T 3v64_C 235 SHRK-AVISQGLPHPFA-ITV-FEDSLYWTDWHTKSINSANKFT 275 (349)
T ss_dssp CSCE-EEECSSCSSEEE-EEE-ETTEEEEEETTTTEEEEEETTT
T ss_pred CceE-EEEeCCCCCceE-EEE-ECCEEEEecCCCCeEEEEEccC
Confidence 3222 111 122222 333 4555566666678888887433
No 266
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=98.48 E-value=3.5e-05 Score=59.67 Aligned_cols=193 Identities=8% Similarity=0.037 Sum_probs=117.4
Q ss_pred CceeeeccCcCCc--EEEEEecCC-EEEEccCC--CcEEEEcCCcc--eecccCCCC-CeeEEEEeCCEEEEEe-CCCeE
Q 047325 34 NGLIGSLVREEGH--IYSLAASKD-LLYTGSDS--KNIRVWKNLKE--FCGFKASSG-LVKAIVISGEKIFTGH-QDGKI 104 (368)
Q Consensus 34 ~~~~~~~~~h~~~--i~~~~~~~~-~l~s~~~d--g~i~iw~~~~~--~~~~~~~~~-~v~~~~~~~~~l~s~~-~dg~i 104 (368)
.+++.++ .|... ...|.|+++ +..+.+.+ ..|+.+|+.+. +........ .-..+.+.++.|+... .++.+
T Consensus 9 ~~v~~~~-phd~~~ftqGL~~~~~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~~fgeGi~~~~~~ly~ltw~~~~v 87 (243)
T 3mbr_X 9 YRVVKRY-PHDTTAFTEGLFYLRGHLYESTGETGRSSVRKVDLETGRILQRAEVPPPYFGAGIVAWRDRLIQLTWRNHEG 87 (243)
T ss_dssp EEEEEEE-ECCTTCCEEEEEEETTEEEEEECCTTSCEEEEEETTTCCEEEEEECCTTCCEEEEEEETTEEEEEESSSSEE
T ss_pred eEEEEEc-CCCCccccccEEEECCEEEEECCCCCCceEEEEECCCCCEEEEEeCCCCcceeEEEEeCCEEEEEEeeCCEE
Confidence 3455665 55433 668999888 44555554 48999998754 222222222 2245666666665554 68899
Q ss_pred EEEeecCCCccccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcCCCCEEEEEeCCCcEEEEEcc
Q 047325 105 RVWKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCGLLYTASWDRTFKVWRIS 184 (368)
Q Consensus 105 ~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~ 184 (368)
.++|..+.+........ ..=..++ ++++.|+.+..++.|.++|..
T Consensus 88 ~v~D~~tl~~~~ti~~~---------------------------------~~Gwglt--~dg~~L~vSdgs~~l~~iDp~ 132 (243)
T 3mbr_X 88 FVYDLATLTPRARFRYP---------------------------------GEGWALT--SDDSHLYMSDGTAVIRKLDPD 132 (243)
T ss_dssp EEEETTTTEEEEEEECS---------------------------------SCCCEEE--ECSSCEEEECSSSEEEEECTT
T ss_pred EEEECCcCcEEEEEeCC---------------------------------CCceEEe--eCCCEEEEECCCCeEEEEeCC
Confidence 99999887754433321 1112333 456677777778999999999
Q ss_pred CCeEEEEeecCC-----CceEEEEeCCCCeE-EEEcCCCeEEEEEcCCCCCCcccccceee-------ccccccEEEEEE
Q 047325 185 DSKCLESVSAHD-----DAVNSVVSSSEGLI-FTGSADGTVKVWKREQHGKGTKHSLAQTL-------LKQECAVTALVV 251 (368)
Q Consensus 185 ~~~~~~~~~~~~-----~~v~~~~~~~~~~l-~~~~~dg~i~i~d~~~~~~~~~~~~~~~~-------~~~~~~i~~~~~ 251 (368)
+.+.+..+.-.. ..++.+.+. +|.+ +..-.+..|.+.|.+++............ .....-.+.|++
T Consensus 133 t~~~~~~I~V~~~g~~~~~lNeLe~~-~G~lyanvw~s~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~ 211 (243)
T 3mbr_X 133 TLQQVGSIKVTAGGRPLDNLNELEWV-NGELLANVWLTSRIARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAF 211 (243)
T ss_dssp TCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTTTEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEE
T ss_pred CCeEEEEEEEccCCcccccceeeEEe-CCEEEEEECCCCeEEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEE
Confidence 998888776421 245566665 5544 44445779999999876431111100000 112346799999
Q ss_pred cCCCCEEEEecC
Q 047325 252 SSSRSIVYCGSS 263 (368)
Q Consensus 252 ~~~~~~l~~~~~ 263 (368)
+|+++.|+..+.
T Consensus 212 d~~~~~lfVTGK 223 (243)
T 3mbr_X 212 DAEHDRLFVTGK 223 (243)
T ss_dssp ETTTTEEEEEET
T ss_pred cCCCCEEEEECC
Confidence 998776665543
No 267
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=98.41 E-value=3.7e-05 Score=68.76 Aligned_cols=193 Identities=8% Similarity=0.016 Sum_probs=107.9
Q ss_pred cCCEEEEccC-CCcEEEEcC-Cccee--cccCCCC-----------CeeEEEE--eCCE----EEEEeCCCeEEEEeecC
Q 047325 53 SKDLLYTGSD-SKNIRVWKN-LKEFC--GFKASSG-----------LVKAIVI--SGEK----IFTGHQDGKIRVWKISP 111 (368)
Q Consensus 53 ~~~~l~s~~~-dg~i~iw~~-~~~~~--~~~~~~~-----------~v~~~~~--~~~~----l~s~~~dg~i~vw~~~~ 111 (368)
.++.++.++. ++.|.-+|. .+... .+..... ....+.+ .+.. ++.++.|+.|..+|..+
T Consensus 61 ~~g~vyv~~~~~~~v~AlD~~~tG~~lW~~~~~~~~~~~~~~~~~~~~~g~av~p~~g~~~~rV~v~t~dg~l~AlDa~T 140 (599)
T 1w6s_A 61 VDGKMYIHTSFPNNTFALGLDDPGTILWQDKPKQNPAARAVACCDLVNRGLAYWPGDGKTPALILKTQLDGNVAALNAET 140 (599)
T ss_dssp ETTEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCSSCSCCCCCEEECCCSSSCCEEEEECTTSEEEEEETTT
T ss_pred ECCEEEEEeCCCCEEEEEeCCCCCcEEEEECCCCCccccccccccccccceEEEecCCcceeEEEEEcCCCEEEEEECCC
Confidence 3556666666 788888887 54322 2211110 0123445 4555 88899999999999999
Q ss_pred CCccccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcCCCCEEEEEe------CCCcEEEEEccC
Q 047325 112 KNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCGLLYTAS------WDRTFKVWRISD 185 (368)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~------~d~~i~iwd~~~ 185 (368)
++............. +.-...++ +. ++ .+++++ .++.|+.+|..+
T Consensus 141 G~~~W~~~~~~~~~~-----------------------~~~~ssP~----v~-~g-~V~vg~~g~e~g~~g~v~A~D~~T 191 (599)
T 1w6s_A 141 GETVWKVENSDIKVG-----------------------STLTIAPY----VV-KD-KVIIGSSGAELGVRGYLTAYDVKT 191 (599)
T ss_dssp CCEEEEEECCCGGGT-----------------------CBCCSCCE----EE-TT-EEEECCBCGGGTCCCEEEEEETTT
T ss_pred CCEEEeecCCCCCcc-----------------------ceeecCCE----EE-CC-EEEEEecccccCCCCeEEEEECCC
Confidence 987655432210000 00011111 11 23 455554 379999999999
Q ss_pred CeEEEEeecCCCce--------------------------------------EEEEeCCCC-eEEEEcCC----------
Q 047325 186 SKCLESVSAHDDAV--------------------------------------NSVVSSSEG-LIFTGSAD---------- 216 (368)
Q Consensus 186 ~~~~~~~~~~~~~v--------------------------------------~~~~~~~~~-~l~~~~~d---------- 216 (368)
|+.+-.+....... ..+++.++. .++.+..+
T Consensus 192 G~~~W~~~~~~~~~~~~~~p~~~~~~~~~g~~~~g~~tw~g~~~~~gg~~~W~~~a~d~~~g~vy~g~g~~~p~~~~~r~ 271 (599)
T 1w6s_A 192 GEQVWRAYATGPDKDLLLASDFNIKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTGNPAPWNETMRP 271 (599)
T ss_dssp CCEEEEEESSSCHHHHTBCTTTTTTCGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSC
T ss_pred CcEEEEEcCCCCccccccccccccccccccccccccccCCCcceecCCCccccceeEeCCCCEEEEeCCCCccccCcccC
Confidence 99887765332110 012333333 66666654
Q ss_pred ------CeEEEEEcCCCCCCcccccceeeccc--------cccEEEEEEc-CCC---CEEEEecCCCcEEEEeCCCcccc
Q 047325 217 ------GTVKVWKREQHGKGTKHSLAQTLLKQ--------ECAVTALVVS-SSR---SIVYCGSSDGLVNFWEREKQLSH 278 (368)
Q Consensus 217 ------g~i~i~d~~~~~~~~~~~~~~~~~~~--------~~~i~~~~~~-~~~---~~l~~~~~dg~i~i~d~~~~~~~ 278 (368)
+.|.-+|.+++..... .....| ..++. +... .++ +.++.++.+|.++++|.++++.+
T Consensus 272 gd~~y~~sv~Ald~~TG~~~W~----~q~~~~d~wd~d~~~~p~l-~d~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l 346 (599)
T 1w6s_A 272 GDNKWTMTIFGRDADTGEAKFG----YQKTPHDEWDYAGVNVMML-SEQKDKDGKARKLLTHPDRNGIVYTLDRTDGALV 346 (599)
T ss_dssp SCCTTSSEEEEEETTTCCEEEE----EESSTTCSSCCCCCCCCEE-EEEECTTSCEEEEEEEECTTSEEEEEETTTCCEE
T ss_pred CCccccceEEEEeCCCCceeeE----eecCCCccccccCCCccEE-EeccccCCcEEEEEEEECCCcEEEEEECCCCCEe
Confidence 3788889887643111 111111 12222 2222 466 46777889999999999887655
Q ss_pred c
Q 047325 279 G 279 (368)
Q Consensus 279 ~ 279 (368)
.
T Consensus 347 w 347 (599)
T 1w6s_A 347 S 347 (599)
T ss_dssp E
T ss_pred e
Confidence 3
No 268
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=98.36 E-value=0.00023 Score=63.71 Aligned_cols=67 Identities=13% Similarity=0.178 Sum_probs=41.4
Q ss_pred cCCEEEEccCCCcEEEEcCCccee--cccCCCCC---------eeEEEEeCCEEEEEeCCCeEEEEeecCCCcccccc
Q 047325 53 SKDLLYTGSDSKNIRVWKNLKEFC--GFKASSGL---------VKAIVISGEKIFTGHQDGKIRVWKISPKNQSVHKR 119 (368)
Q Consensus 53 ~~~~l~s~~~dg~i~iw~~~~~~~--~~~~~~~~---------v~~~~~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~ 119 (368)
.++.++.++.++.|.-+|..+... .+...... ...+.+.++.++.++.|+.|..+|..+++......
T Consensus 67 ~~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~g~a~~~~~v~~~t~dg~l~AlD~~TG~~~W~~~ 144 (582)
T 1flg_A 67 SDGVIYVTASYSRLFALDAKTGKRLWTYNHRLPDDIRPCCDVVNRGAAIYGDKVFFGTLDASVVALNKNTGKVVWKKK 144 (582)
T ss_dssp ETTEEEEEETTTEEEEEESSSCCEEEEEECCCCTTCCCSSCSCCCCCEEETTEEEEEETTTEEEEEESSSCCEEEEEE
T ss_pred ECCEEEEEcCCCCEEEEECCCCcEEEEEcCCCCcccccccccCCCccEEECCEEEEEeCCCEEEEEECCCCCEEeeec
Confidence 345555555534477788764322 22211110 12334568889999999999999999998765543
No 269
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=98.36 E-value=0.00086 Score=57.03 Aligned_cols=243 Identities=10% Similarity=0.048 Sum_probs=134.3
Q ss_pred EEEEccCCCcEEEEcCCcc-eecccCCCCCeeEEEEe--CCEEEEE-eCCCeEEEEeecCCCccccccCCccccceeeee
Q 047325 56 LLYTGSDSKNIRVWKNLKE-FCGFKASSGLVKAIVIS--GEKIFTG-HQDGKIRVWKISPKNQSVHKRAGTLPTLKDIFK 131 (368)
Q Consensus 56 ~l~s~~~dg~i~iw~~~~~-~~~~~~~~~~v~~~~~~--~~~l~s~-~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~ 131 (368)
+|+.+. ...|+..++... ...+......+.+++|+ ++.|+.+ ...+.|..+++.........
T Consensus 85 ~ll~~~-~~~I~~i~l~~~~~~~~~~~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~------------- 150 (400)
T 3p5b_L 85 YLFFTN-RHEVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSY------------- 150 (400)
T ss_dssp EEEEEE-TTEEEEECTTSCSCEEEECSCSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCC-------------
T ss_pred eeEEec-cceeEEEccCCcceeEeccccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcc-------------
Confidence 444333 367888887643 22333445677889998 4555555 45678888887653210000
Q ss_pred ccCCCCceeEecccceeeeeecCCCEeEEEEcCCCC-EEEEEeCCCcEEEEEccCCeEEEEeecCCCceEEEEeCCCC-e
Q 047325 132 SSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCG-LLYTASWDRTFKVWRISDSKCLESVSAHDDAVNSVVSSSEG-L 209 (368)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~ 209 (368)
.............+++.+.+. ++++-...+.|.+.++........+.........+++.|.+ .
T Consensus 151 ---------------~~~~~~~~~~p~glavD~~~~~lY~~d~~~~~I~~~~~~g~~~~~l~~~~~~~P~~iavdp~~g~ 215 (400)
T 3p5b_L 151 ---------------DTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGF 215 (400)
T ss_dssp ---------------EEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEECTTTCSEEEEEECSSCCEEEEEEETTTTE
T ss_pred ---------------eEEEeCCCCCcccEEEEecCCceEEEECCCCeEEEEeCCCCceEEEEeCCCCCcceEEEecccCe
Confidence 000001224567899988444 44554567889999987655544444444557899998854 5
Q ss_pred EEEEc--CCCeEEEEEcCCCCCCcccccceeeccccccEEEEEEcCCCCEEEEe-cCCCcEEEEeCCCccccceeeec--
Q 047325 210 IFTGS--ADGTVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSSSRSIVYCG-SSDGLVNFWEREKQLSHGGVLKG-- 284 (368)
Q Consensus 210 l~~~~--~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~~dg~i~i~d~~~~~~~~~~~~~-- 284 (368)
|+... ..+.|...++..... .......-.....|++++++..|+.+ ...+.|..+|+...... .....
T Consensus 216 ly~td~~~~~~I~~~~~dG~~~------~~~~~~~l~~P~glavd~~~~~lY~aD~~~~~I~~~d~dG~~~~-~~~~~~~ 288 (400)
T 3p5b_L 216 MYWTDWGTPAKIKKGGLNGVDI------YSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRK-TILEDEK 288 (400)
T ss_dssp EEEEECSSSCCEEEEETTSCSC------EEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCCE-EEEECSS
T ss_pred EEEEeCCCCCEEEEEeCCCCcc------EEEEECCCCceEEEEEEeCCCEEEEEECCCCEEEEEeCCCCccE-EEEeCCC
Confidence 54443 247888888764321 11112223467899999877766555 45678999998754332 22221
Q ss_pred cceEEEEEEeC-CCEEEEeeCCCeEEEEecCCCceeeeEeeeccccCeeEEEE
Q 047325 285 HKLAVLCLAAA-GKLVFSGSADKTICVWRRDGAIHTCLSVLTGHTGPVKCLAV 336 (368)
Q Consensus 285 ~~~~~~~~~~~-~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~l~~ 336 (368)
.-..-..++.+ +.++++-...+.|..++..++ ..+..+........+|..
T Consensus 289 ~l~~P~gl~v~~~~lywtd~~~~~V~~~~~~~G--~~~~~i~~~~~~p~~i~v 339 (400)
T 3p5b_L 289 RLAHPFSLAVFEDKVFWTDIINEAIFSANRLTG--SDVNLLAENLLSPEDMVL 339 (400)
T ss_dssp TTSSEEEEEEETTEEEEEESSSCSEEEEESSSC--CCCEEEECSCSCEEEEEE
T ss_pred CCCCCEEEEEeCCEEEEecCCCCeEEEEEcCCC--CceEEEecCCCCCceEEE
Confidence 11112334434 445556666788888875444 233333333334455543
No 270
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=98.34 E-value=0.00084 Score=55.93 Aligned_cols=192 Identities=10% Similarity=0.005 Sum_probs=111.4
Q ss_pred CCEeEEEEcCCCCEEEEEe-CCCcEEEEEccCCeEEEEeecCCCceEEEEeCCC-C-eEEEEcCCCeEEEEEcCCCCCCc
Q 047325 155 DAVSCMSLDQDCGLLYTAS-WDRTFKVWRISDSKCLESVSAHDDAVNSVVSSSE-G-LIFTGSADGTVKVWKREQHGKGT 231 (368)
Q Consensus 155 ~~v~~~~~~~~~~~l~~~~-~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~-~-~l~~~~~dg~i~i~d~~~~~~~~ 231 (368)
..+..++|++....|+.+. ..+.|..+++........+.........+++.+. + ++++-...+.|.+.++.....
T Consensus 73 ~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~-- 150 (349)
T 3v64_C 73 ENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHR-- 150 (349)
T ss_dssp SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSC--
T ss_pred CceEEEEEeccccEEEEEeccCCceEEEecCCCCceEEEeCCCCCccEEEEecCCCeEEEEcCCCCeEEEEcCCCCce--
Confidence 4578899998666665554 5678999998766544433333344567888764 4 556666678999999874321
Q ss_pred ccccceeeccccccEEEEEEcCCCCEEE-EecCC-CcEEEEeCCCccccceee-eccceEEEEEEeCCCEEEEe-eCCCe
Q 047325 232 KHSLAQTLLKQECAVTALVVSSSRSIVY-CGSSD-GLVNFWEREKQLSHGGVL-KGHKLAVLCLAAAGKLVFSG-SADKT 307 (368)
Q Consensus 232 ~~~~~~~~~~~~~~i~~~~~~~~~~~l~-~~~~d-g~i~i~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~-~~dg~ 307 (368)
.......-.....++++|.+..|+ +-... +.|..+++.......... ......-+++++++..|+.+ ...+.
T Consensus 151 ----~~l~~~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~~~~PnGla~d~~~~~lY~aD~~~~~ 226 (349)
T 3v64_C 151 ----KVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHV 226 (349)
T ss_dssp ----EEEECTTCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEESCCSSCSCEEEEEEETTTTEEEEEETTTTE
T ss_pred ----EEEEeCCCCCcceEEEecCcCeEEEeccCCCCEEEEEeCCCCCcEEEEECCCCCcceEEEeCCCCEEEEEECCCCE
Confidence 111222334578999998655544 44444 788888887532221111 11223347788766655554 45678
Q ss_pred EEEEecCCCceeeeEeeeccccCeeEEEEecCCeeeecCCcceEEEEE
Q 047325 308 ICVWRRDGAIHTCLSVLTGHTGPVKCLAVEEDRDSSSSTSSCAQRWIV 355 (368)
Q Consensus 308 i~iw~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~w~l 355 (368)
|..++++......+ +.........|++.. +.+..+..+..+++.+
T Consensus 227 I~~~~~dG~~~~~~--~~~~~~~P~giav~~-~~ly~td~~~~~V~~~ 271 (349)
T 3v64_C 227 IERANLDGSHRKAV--ISQGLPHPFAITVFE-DSLYWTDWHTKSINSA 271 (349)
T ss_dssp EEEEETTSCSCEEE--ECSSCSSEEEEEEET-TEEEEEETTTTEEEEE
T ss_pred EEEEeCCCCceEEE--EeCCCCCceEEEEEC-CEEEEecCCCCeEEEE
Confidence 99999876432222 222344567788844 4433333333444333
No 271
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=98.31 E-value=0.0005 Score=55.71 Aligned_cols=210 Identities=10% Similarity=0.093 Sum_probs=121.1
Q ss_pred CCCCCeeEEEEe--CCEEEEEe-CCCeEEEEeecCCCccccccCCccccceeeeeccCCCCceeEecccceeeeeecCCC
Q 047325 80 ASSGLVKAIVIS--GEKIFTGH-QDGKIRVWKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDA 156 (368)
Q Consensus 80 ~~~~~v~~~~~~--~~~l~s~~-~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (368)
...-.-.++.|+ ...++.++ ..|+|..|+...+..... ......... .....
T Consensus 10 ~~~~yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~-~~~~~s~~g------------------------~~~~~ 64 (334)
T 2p9w_A 10 VKNLTPEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNV-VIDGASSNG------------------------DGEQQ 64 (334)
T ss_dssp CTTCCCSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEE-CCTTTCCSS------------------------CCSEE
T ss_pred CcccCCcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEE-ecCCccccC------------------------CCcce
Confidence 333445577887 35666665 789999999875532211 111000000 01113
Q ss_pred EeEEEE---cCCCCEEEEEeC-------------CCcEEEEEcc---CCeEEEEee--c-----------CCCceEEEEe
Q 047325 157 VSCMSL---DQDCGLLYTASW-------------DRTFKVWRIS---DSKCLESVS--A-----------HDDAVNSVVS 204 (368)
Q Consensus 157 v~~~~~---~~~~~~l~~~~~-------------d~~i~iwd~~---~~~~~~~~~--~-----------~~~~v~~~~~ 204 (368)
+..+.+ .|++.++++... +..|..+|+. +++.+.... . .......++.
T Consensus 65 ~sGl~~~~~D~~grL~vv~~~~~af~~~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvav 144 (334)
T 2p9w_A 65 MSGLSLLTHDNSKRLFAVMKNAKSFNFADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQ 144 (334)
T ss_dssp EEEEEESSSSSCCEEEEEEEETTTTCTTSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEE
T ss_pred eeEEEEeccCCCCcEEEEEcccccccccccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEE
Confidence 478999 688766665442 6789999998 777665443 1 1134789999
Q ss_pred CCCC-eEEEEcCC-CeEEEEEcCCCCCCcccccceeeccccccEEEEEEcCCCCEEEEecCCCcEEEEeCCCccccceee
Q 047325 205 SSEG-LIFTGSAD-GTVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSSSRSIVYCGSSDGLVNFWEREKQLSHGGVL 282 (368)
Q Consensus 205 ~~~~-~l~~~~~d-g~i~i~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~ 282 (368)
.++| ..++++.. +.|...+...... ................+.|+++|+++.|++....|.+..+|+.+........
T Consensus 145 D~~GnaYVt~s~~~~~I~rV~pdG~~~-~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~~pv~~~v~~ 223 (334)
T 2p9w_A 145 DRDGNSYVAFALGMPAIARVSADGKTV-STFAWESGNGGQRPGYSGITFDPHSNKLIAFGGPRALTAFDVSKPYAWPEPV 223 (334)
T ss_dssp CTTSCEEEEEEESSCEEEEECTTSCCE-EEEEECCCCSSSCCSCSEEEEETTTTEEEEESSSSSEEEEECSSSSCCCEEC
T ss_pred CCCCCEEEeCCCCCCeEEEEeCCCCEE-eeeeecCCCcccccCcceEEEeCCCCEEEEEcCCCeEEEEcCCCCcceeecc
Confidence 9999 66667777 7777666653210 0000000011122346789999999988888779999999988533200111
Q ss_pred e--c------cceEEEEEEeCCCE-EEEeeCCCeEEEEecCC
Q 047325 283 K--G------HKLAVLCLAAAGKL-VFSGSADKTICVWRRDG 315 (368)
Q Consensus 283 ~--~------~~~~~~~~~~~~~~-l~~~~~dg~i~iw~~~~ 315 (368)
. + ....++....+|+. |++....+.+.+.+.+.
T Consensus 224 ~~~G~~~~~~~~dgilp~~~~G~vllV~~~~~~~~~l~S~Dg 265 (334)
T 2p9w_A 224 KINGDFGTLSGTEKIVTVPVGNESVLVGARAPYAISFRSWDN 265 (334)
T ss_dssp EESSCCCCCTTEEEEEEEEETTEEEEEEEETTEEEEEECSST
T ss_pred cccCCcccccCcccccccccCCEEEEEEcCCCCEEEEECCCC
Confidence 1 1 12222344457887 55555666666665444
No 272
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=98.28 E-value=5.6e-05 Score=70.01 Aligned_cols=154 Identities=13% Similarity=0.053 Sum_probs=87.6
Q ss_pred CEeEEEEc-CCCCEEEEEeC-CC----cEEEEEccCC-eEEE-EeecCCCceEEEEeCCCC-eEEEEcCC-----CeEEE
Q 047325 156 AVSCMSLD-QDCGLLYTASW-DR----TFKVWRISDS-KCLE-SVSAHDDAVNSVVSSSEG-LIFTGSAD-----GTVKV 221 (368)
Q Consensus 156 ~v~~~~~~-~~~~~l~~~~~-d~----~i~iwd~~~~-~~~~-~~~~~~~~v~~~~~~~~~-~l~~~~~d-----g~i~i 221 (368)
.+...+|+ |||++|+-+.. +| .|+++|+.++ +.+. .+. .....+.|+||+ .|+....+ ..|+.
T Consensus 175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~~~~---~~~~~~~WspDg~~l~y~~~d~~~~~~~v~~ 251 (751)
T 2xe4_A 175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIADKVS---GTNGEIVWGPDHTSLFYVTKDETLRENKVWR 251 (751)
T ss_dssp EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCCCEE---EECSCCEECSSTTEEEEEEECTTCCEEEEEE
T ss_pred EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCcccc---CceeeEEEecCCCEEEEEEECCCCCCCEEEE
Confidence 57789999 99998875543 33 4999999988 6321 121 113467899998 55555544 35777
Q ss_pred EEcCCCCCCcccccceeeccccccEEEEEEcCCCCEEEEec---CCCcEEEEeCCCccc-c--ceeeeccceEEEEEE-e
Q 047325 222 WKREQHGKGTKHSLAQTLLKQECAVTALVVSSSRSIVYCGS---SDGLVNFWEREKQLS-H--GGVLKGHKLAVLCLA-A 294 (368)
Q Consensus 222 ~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~---~dg~i~i~d~~~~~~-~--~~~~~~~~~~~~~~~-~ 294 (368)
+++.+... ....+.. .........+.|+||+++|+... ....|+++|+.++.. . ............... .
T Consensus 252 ~~lgt~~~--~~~lv~~-~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~s~~~~ 328 (751)
T 2xe4_A 252 HVMGKLQS--EDVCLYE-EHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGNAHNTLEIVRPREKGVRYDVQMH 328 (751)
T ss_dssp EETTSCGG--GCEEEEE-CCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSCTTCCCEEESSCCCTTCCEEEEEE
T ss_pred EECCCCch--hcEEEEe-cCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCCCCCceeEEeecCCCCceEEEeee
Confidence 88765321 0011111 12223456789999999888655 334688889876521 1 122222223333343 3
Q ss_pred CCCEEEE-eeCC----CeEEEEecCC
Q 047325 295 AGKLVFS-GSAD----KTICVWRRDG 315 (368)
Q Consensus 295 ~~~~l~~-~~~d----g~i~iw~~~~ 315 (368)
+++.|+. ...+ ..|..+++++
T Consensus 329 ~g~~l~~~t~~~~a~~~~L~~~d~~~ 354 (751)
T 2xe4_A 329 GTSHLVILTNEGGAVNHKLLIAPRGQ 354 (751)
T ss_dssp TTTEEEEEECTTTCTTCEEEEEETTS
T ss_pred eCCEEEEEeCCCCCCCcEEEEEcCCC
Confidence 3665444 3333 2566666653
No 273
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=98.28 E-value=0.001 Score=54.55 Aligned_cols=193 Identities=12% Similarity=-0.002 Sum_probs=108.1
Q ss_pred CCEeEEEEcCCCCEEEEE-eCCCcEEEEEccC----CeEEEEeecCCCceEEEEeCC-CC-eEEEEcCCCeEEEEEcCCC
Q 047325 155 DAVSCMSLDQDCGLLYTA-SWDRTFKVWRISD----SKCLESVSAHDDAVNSVVSSS-EG-LIFTGSADGTVKVWKREQH 227 (368)
Q Consensus 155 ~~v~~~~~~~~~~~l~~~-~~d~~i~iwd~~~----~~~~~~~~~~~~~v~~~~~~~-~~-~l~~~~~dg~i~i~d~~~~ 227 (368)
.....++|++.++.|+.+ ..++.|..+++.. ......+...-.....+++.+ .+ .+++-...+.|.+.++...
T Consensus 30 ~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavd~~~~~ly~~d~~~~~I~~~~~~g~ 109 (316)
T 1ijq_A 30 RNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGV 109 (316)
T ss_dssp SSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSS
T ss_pred CceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCCCCCcCEEEEeecCCeEEEEECCCCEEEEEeCCCC
Confidence 456789999876655555 4568899999875 222222322223457788875 34 4555567889999998643
Q ss_pred CCCcccccceeeccccccEEEEEEcCCCCEEEEecC-C-CcEEEEeCCCcccccee-eeccceEEEEEEeCCCEEEEee-
Q 047325 228 GKGTKHSLAQTLLKQECAVTALVVSSSRSIVYCGSS-D-GLVNFWEREKQLSHGGV-LKGHKLAVLCLAAAGKLVFSGS- 303 (368)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-d-g~i~i~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~- 303 (368)
. ..............++++|.+..|+.+.. . +.|..+++......... .......-+++++++..|+.+.
T Consensus 110 ~------~~~~~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG~~~~~~~~~~~~~P~gla~d~~~~~lY~~D~ 183 (316)
T 1ijq_A 110 K------RKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDS 183 (316)
T ss_dssp S------EEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEECSSCSCEEEEEEETTTTEEEEEET
T ss_pred c------eEEEEECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCCCCCeEEEEECCCCCceEEEEeccCCEEEEEEC
Confidence 1 11111222345789999986665554443 3 68888887643221111 1112233477787766665554
Q ss_pred CCCeEEEEecCCCceeeeEeeeccccCeeEEEEecCCeeeecCCcceEEEE
Q 047325 304 ADKTICVWRRDGAIHTCLSVLTGHTGPVKCLAVEEDRDSSSSTSSCAQRWI 354 (368)
Q Consensus 304 ~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~w~ 354 (368)
..+.|..+|++....+.+............|++.. +.+..+..+..++..
T Consensus 184 ~~~~I~~~d~dg~~~~~~~~~~~~~~~P~giav~~-~~ly~~d~~~~~V~~ 233 (316)
T 1ijq_A 184 KLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFE-DKVFWTDIINEAIFS 233 (316)
T ss_dssp TTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEET-TEEEEEETTTTEEEE
T ss_pred CCCeEEEEecCCCceEEEeecCCccCCcEEEEEEC-CEEEEEECCCCeEEE
Confidence 56789999987643333332212233467788864 444333333344433
No 274
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=98.27 E-value=0.0014 Score=55.44 Aligned_cols=192 Identities=11% Similarity=0.014 Sum_probs=110.5
Q ss_pred CCEeEEEEcCCCCEEEEE-eCCCcEEEEEccCCeEEEEeecCCCceEEEEeCCC-C-eEEEEcCCCeEEEEEcCCCCCCc
Q 047325 155 DAVSCMSLDQDCGLLYTA-SWDRTFKVWRISDSKCLESVSAHDDAVNSVVSSSE-G-LIFTGSADGTVKVWKREQHGKGT 231 (368)
Q Consensus 155 ~~v~~~~~~~~~~~l~~~-~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~-~-~l~~~~~dg~i~i~d~~~~~~~~ 231 (368)
.....++|++.+..|+.+ ...+.|..+++........+.........+++.+. + ++++-...+.|.+.++.....
T Consensus 116 ~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p~glavd~~~g~lY~~d~~~~~I~~~~~dg~~~-- 193 (386)
T 3v65_B 116 ENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHR-- 193 (386)
T ss_dssp SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEEEEECSSCSCCCCEEEETTTTEEEEEETTTTEEEECBTTSCSC--
T ss_pred CccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcEEEEeCCCCCccEEEEEeCCCeEEEEcCCCCeEEEEeCCCCce--
Confidence 457889999866555554 45678999998766544444333334566777764 4 555666678888888764311
Q ss_pred ccccceeeccccccEEEEEEcCCCCEEEEec-CC-CcEEEEeCCCccccceeee-ccceEEEEEEeCCCEEEEe-eCCCe
Q 047325 232 KHSLAQTLLKQECAVTALVVSSSRSIVYCGS-SD-GLVNFWEREKQLSHGGVLK-GHKLAVLCLAAAGKLVFSG-SADKT 307 (368)
Q Consensus 232 ~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~d-g~i~i~d~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~-~~dg~ 307 (368)
.......-.....++++|.+..|+... .. +.|..+++........... .....-+++++++..|+.+ ...+.
T Consensus 194 ----~~l~~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~~~~PnGlavd~~~~~lY~aD~~~~~ 269 (386)
T 3v65_B 194 ----KVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHV 269 (386)
T ss_dssp ----EEEECSSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSCEEEEEEEGGGTEEEEEETTTTE
T ss_pred ----EEeecCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCCCCcEEEEECCCCCeeeEEEeCCCCEEEEEECCCCE
Confidence 111222334578999998666555443 44 6888888875432211111 1223347788766655544 45678
Q ss_pred EEEEecCCCceeeeEeeeccccCeeEEEEecCCeeeecCCcceEEEEE
Q 047325 308 ICVWRRDGAIHTCLSVLTGHTGPVKCLAVEEDRDSSSSTSSCAQRWIV 355 (368)
Q Consensus 308 i~iw~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~w~l 355 (368)
|..++++......+ +.........|++..+ .+..+..+..+++.+
T Consensus 270 I~~~d~dG~~~~~~--~~~~~~~P~giav~~~-~ly~td~~~~~V~~~ 314 (386)
T 3v65_B 270 IERANLDGSHRKAV--ISQGLPHPFAITVFED-SLYWTDWHTKSINSA 314 (386)
T ss_dssp EEEECTTSCSCEEE--ECSSCSSEEEEEEETT-EEEEEETTTTEEEEE
T ss_pred EEEEeCCCCeeEEE--EECCCCCceEEEEECC-EEEEeeCCCCeEEEE
Confidence 99998875422222 2223445677888444 433333333444333
No 275
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=98.26 E-value=0.00047 Score=59.25 Aligned_cols=112 Identities=9% Similarity=0.057 Sum_probs=67.7
Q ss_pred CCEeEEEEcCCCCEEEEEeCC-C----cEEEEEccCCeEE--EEeecCCCceEEEEeCC-CC-eEEEEcCCCeEEEEEcC
Q 047325 155 DAVSCMSLDQDCGLLYTASWD-R----TFKVWRISDSKCL--ESVSAHDDAVNSVVSSS-EG-LIFTGSADGTVKVWKRE 225 (368)
Q Consensus 155 ~~v~~~~~~~~~~~l~~~~~d-~----~i~iwd~~~~~~~--~~~~~~~~~v~~~~~~~-~~-~l~~~~~dg~i~i~d~~ 225 (368)
.....+++++++++|+++... + .+...+. .+... ..+.. ......+++.| ++ ++++-..++.|..++..
T Consensus 179 ~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~-~g~~~~~~~l~~-~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~ 256 (430)
T 3tc9_A 179 SKVRTICWTHEADSMIITNDQNNNDRPNNYILTR-ESGFKVITELTK-GQNCNGAETHPINGELYFNSWNAGQVFRYDFT 256 (430)
T ss_dssp SCEEEEEECTTSSEEEEEECCSCTTSEEEEEEEG-GGTSCSEEEEEE-CSSCCCEEECTTTCCEEEEETTTTEEEEEETT
T ss_pred CCcceEEEeCCCCEEEEEeCCCCcccceEEEEeC-CCceeeeeeecc-CCCceEEEEeCCCCEEEEEECCCCEEEEEECC
Confidence 457789999999966666542 2 2344443 23211 22222 23456788899 66 45555567899999987
Q ss_pred CCCCCcccccceeeccccccEEEEEEcCCCCE-EEEecCCCcEEEEeCC
Q 047325 226 QHGKGTKHSLAQTLLKQECAVTALVVSSSRSI-VYCGSSDGLVNFWERE 273 (368)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~-l~~~~~dg~i~i~d~~ 273 (368)
.... ..... .........++++|++++ +++-...+.|..++..
T Consensus 257 ~~~~----~~~~~-~~~~~~P~gia~~pdG~~lyv~d~~~~~I~~~~~d 300 (430)
T 3tc9_A 257 TQET----TPLFT-IQDSGWEFHIQFHPSGNYAYIVVVNQHYILRSDYD 300 (430)
T ss_dssp TTEE----EEEEE-CSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEE
T ss_pred CCcE----EEEEE-cCCCCcceeEEEcCCCCEEEEEECCCCEEEEEeCC
Confidence 4311 01111 112234678999999994 4555567889998765
No 276
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=98.23 E-value=0.00099 Score=52.30 Aligned_cols=205 Identities=11% Similarity=0.057 Sum_probs=121.8
Q ss_pred eccCcCCcEEEEEecCC---EEEEccCCCcEEEEcCCccee-ccc-CCCCCeeEEEEe--CCEEEEEeCCCeEEEEeecC
Q 047325 39 SLVREEGHIYSLAASKD---LLYTGSDSKNIRVWKNLKEFC-GFK-ASSGLVKAIVIS--GEKIFTGHQDGKIRVWKISP 111 (368)
Q Consensus 39 ~~~~h~~~i~~~~~~~~---~l~s~~~dg~i~iw~~~~~~~-~~~-~~~~~v~~~~~~--~~~l~s~~~dg~i~vw~~~~ 111 (368)
.+.+-.+.+..++++++ ++++...++.|...|....+. .+. .-......|++. +.++++.-.++.+.++++..
T Consensus 21 ~l~g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~g~v~~~i~l~g~~D~EGIa~~~~g~~~vs~E~~~~l~~~~v~~ 100 (255)
T 3qqz_A 21 EIAGITNNISSLTWSAQSNTLFSTINKPAAIVEMTTNGDLIRTIPLDFVKDLETIEYIGDNQFVISDERDYAIYVISLTP 100 (255)
T ss_dssp ECTTCCSCEEEEEEETTTTEEEEEEETTEEEEEEETTCCEEEEEECSSCSSEEEEEECSTTEEEEEETTTTEEEEEEECT
T ss_pred ECCCcccCcceeEEeCCCCEEEEEECCCCeEEEEeCCCCEEEEEecCCCCChHHeEEeCCCEEEEEECCCCcEEEEEcCC
Confidence 35555678999999853 555577788888888774322 221 122457777876 33445555678899998876
Q ss_pred CCccccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcCCCCEEEEEeCCCcEEEEEcc---CCeE
Q 047325 112 KNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCGLLYTASWDRTFKVWRIS---DSKC 188 (368)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~---~~~~ 188 (368)
............+ .. ....+.....++++|.++.|+++.......+|.+. ....
T Consensus 101 ~~~i~~~~~~~~~----------------------~~-~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~~~ 157 (255)
T 3qqz_A 101 NSEVKILKKIKIP----------------------LQ-ESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSNE 157 (255)
T ss_dssp TCCEEEEEEEECC----------------------CS-SCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCSSC
T ss_pred CCeeeeeeeeccc----------------------cc-cccccCCcceEEEeCCCCEEEEEECcCCceEEEEcccccCCc
Confidence 5421100000000 00 00145567899999998888777766566666654 1111
Q ss_pred EEEee-------cCCCceEEEEeCCCC--eEEEEcCCCeEEEEEcCCCCCCcccccceeec-cc------cccEEEEEEc
Q 047325 189 LESVS-------AHDDAVNSVVSSSEG--LIFTGSADGTVKVWKREQHGKGTKHSLAQTLL-KQ------ECAVTALVVS 252 (368)
Q Consensus 189 ~~~~~-------~~~~~v~~~~~~~~~--~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~-~~------~~~i~~~~~~ 252 (368)
+..+. .+...+.+++++|.. +++.......+.++|.+.. . .....+. +. -.....|+|.
T Consensus 158 l~i~~~~~~~~~~~~~d~S~l~~dp~tg~lliLS~~s~~L~~~d~~g~-~----~~~~~L~~g~~~l~~~~~qpEGia~d 232 (255)
T 3qqz_A 158 LHISKDKALQRQFTLDDVSGAEFNQQKNTLLVLSHESRALQEVTLVGE-V----IGEMSLTKGSRGLSHNIKQAEGVAMD 232 (255)
T ss_dssp CEEEECHHHHHTCCSSCCCEEEEETTTTEEEEEETTTTEEEEECTTCC-E----EEEEECSTTGGGCSSCCCSEEEEEEC
T ss_pred eeeecchhhccccccCCceeEEEcCCCCeEEEEECCCCeEEEEcCCCC-E----EEEEEcCCccCCcccccCCCCeeEEC
Confidence 22221 123356788998876 7777778889999997642 1 1111111 11 1357899999
Q ss_pred CCCCEEEEecCCCcEEEEeC
Q 047325 253 SSRSIVYCGSSDGLVNFWER 272 (368)
Q Consensus 253 ~~~~~l~~~~~dg~i~i~d~ 272 (368)
++|++.++ ++-+.++.|..
T Consensus 233 ~~G~lyIv-sE~n~~y~f~~ 251 (255)
T 3qqz_A 233 ASGNIYIV-SEPNRFYRFTP 251 (255)
T ss_dssp TTCCEEEE-ETTTEEEEEEC
T ss_pred CCCCEEEE-cCCceEEEEEe
Confidence 99985544 67677777653
No 277
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=98.23 E-value=0.00063 Score=55.13 Aligned_cols=199 Identities=5% Similarity=0.008 Sum_probs=116.0
Q ss_pred eEEEEcCCCCEEEEEe-CCCcEEEEEccCCeEEEE-eec----C--CCceEEEEe---CCCC-eEEEEc-----------
Q 047325 158 SCMSLDQDCGLLYTAS-WDRTFKVWRISDSKCLES-VSA----H--DDAVNSVVS---SSEG-LIFTGS----------- 214 (368)
Q Consensus 158 ~~~~~~~~~~~l~~~~-~d~~i~iwd~~~~~~~~~-~~~----~--~~~v~~~~~---~~~~-~l~~~~----------- 214 (368)
.+++|++....|+.++ ..+.|..||...+..... +.. . ...+..+.+ .|++ ++++..
T Consensus 16 E~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~~af~~~g~~ 95 (334)
T 2p9w_A 16 EDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKNAKSFNFADQS 95 (334)
T ss_dssp SCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEETTTTCTTSCC
T ss_pred cCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCCCCcEEEEEcccccccccccc
Confidence 4689988666777776 689999999975543332 221 1 114578899 5778 444333
Q ss_pred --CCCeEEEEEcC---CCCCCcccccceeecc-------ccccEEEEEEcCCCCEEEEecCC-CcEEEEeCCCcccccee
Q 047325 215 --ADGTVKVWKRE---QHGKGTKHSLAQTLLK-------QECAVTALVVSSSRSIVYCGSSD-GLVNFWEREKQLSHGGV 281 (368)
Q Consensus 215 --~dg~i~i~d~~---~~~~~~~~~~~~~~~~-------~~~~i~~~~~~~~~~~l~~~~~d-g~i~i~d~~~~~~~~~~ 281 (368)
.+..|..+|+. ++.......+.....+ .......++..++|+..++++.. +.|...+....... ..
T Consensus 96 ~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~~I~rV~pdG~~~~-~~ 174 (334)
T 2p9w_A 96 SHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGMPAIARVSADGKTVS-TF 174 (334)
T ss_dssp SSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEESSCEEEEECTTSCCEE-EE
T ss_pred cCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEeCCCCCCeEEEEeCCCCEEe-ee
Confidence 26789999998 4432111100000001 12358899999999999988888 88877776643211 11
Q ss_pred eecc-------ceEEEEEEeCCCEEEEeeCCCeEEEEecCCCceeeeEee-ecc---ccCeeEE-EEecCCeeeecCCcc
Q 047325 282 LKGH-------KLAVLCLAAAGKLVFSGSADKTICVWRRDGAIHTCLSVL-TGH---TGPVKCL-AVEEDRDSSSSTSSC 349 (368)
Q Consensus 282 ~~~~-------~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~-~~h---~~~v~~l-~~~~~~~~~~~~~~~ 349 (368)
.... ...-+.+.|++..|++...+|.|..+|+.......+..- .+. -.....| ..-.+|+.++.+++.
T Consensus 175 ~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~~pv~~~v~~~~~G~~~~~~~~dgilp~~~~G~vllV~~~~ 254 (334)
T 2p9w_A 175 AWESGNGGQRPGYSGITFDPHSNKLIAFGGPRALTAFDVSKPYAWPEPVKINGDFGTLSGTEKIVTVPVGNESVLVGARA 254 (334)
T ss_dssp EECCCCSSSCCSCSEEEEETTTTEEEEESSSSSEEEEECSSSSCCCEECEESSCCCCCTTEEEEEEEEETTEEEEEEEET
T ss_pred eecCCCcccccCcceEEEeCCCCEEEEEcCCCeEEEEcCCCCcceeecccccCCcccccCcccccccccCCEEEEEEcCC
Confidence 1111 112367889999888887799999999875321012111 021 1223443 444577775555444
Q ss_pred eEEEEEee
Q 047325 350 AQRWIVYS 357 (368)
Q Consensus 350 ~~~w~l~s 357 (368)
...+.+.+
T Consensus 255 ~~~~~l~S 262 (334)
T 2p9w_A 255 PYAISFRS 262 (334)
T ss_dssp TEEEEEEC
T ss_pred CCEEEEEC
Confidence 44455554
No 278
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=98.23 E-value=0.0015 Score=53.97 Aligned_cols=152 Identities=6% Similarity=0.055 Sum_probs=81.9
Q ss_pred cCCCEeEEEEcCCCCEEEEEeCCCcEEE-EEc--cCCeEEEEeecCCCceEEEEeCCCCeEEEEcCCCeEEEEEcCCCCC
Q 047325 153 HSDAVSCMSLDQDCGLLYTASWDRTFKV-WRI--SDSKCLESVSAHDDAVNSVVSSSEGLIFTGSADGTVKVWKREQHGK 229 (368)
Q Consensus 153 ~~~~v~~~~~~~~~~~l~~~~~d~~i~i-wd~--~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~ 229 (368)
....+..+.+.+++.+++++. +|.+.. .|- .+-+.+. ......+..+.+.+++.++.++.+|.+++.+...+
T Consensus 161 ~~~~~~~~~~~~~~~~~~~g~-~G~~~~S~d~gG~tW~~~~--~~~~~~~~~~~~~~~g~~~~~~~~G~~~~s~~D~G-- 235 (327)
T 2xbg_A 161 AIGVMRNLNRSPSGEYVAVSS-RGSFYSTWEPGQTAWEPHN--RTTSRRLHNMGFTPDGRLWMIVNGGKIAFSDPDNS-- 235 (327)
T ss_dssp CCCCEEEEEECTTSCEEEEET-TSSEEEEECTTCSSCEEEE--CCSSSCEEEEEECTTSCEEEEETTTEEEEEETTEE--
T ss_pred CCcceEEEEEcCCCcEEEEEC-CCcEEEEeCCCCCceeECC--CCCCCccceeEECCCCCEEEEeCCceEEEecCCCC--
Confidence 345678899999887776664 454444 342 2333332 23456788888988886666777888877642211
Q ss_pred Ccccccceee-ccccccEEEEEEcCCCCEEEEecCCCcEEEEeCCCccccceeee--ccceEEEEEEe-CCCEEEEeeCC
Q 047325 230 GTKHSLAQTL-LKQECAVTALVVSSSRSIVYCGSSDGLVNFWEREKQLSHGGVLK--GHKLAVLCLAA-AGKLVFSGSAD 305 (368)
Q Consensus 230 ~~~~~~~~~~-~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~--~~~~~~~~~~~-~~~~l~~~~~d 305 (368)
........- ......+..+.+.+++..++++. +|.+. +..+.++.-..... .....+.++.+ ++..+++++.+
T Consensus 236 -~tW~~~~~~~~~~~~~~~~v~~~~~~~~~~~g~-~g~i~-~S~DgG~tW~~~~~~~~~~~~~~~v~~~~~~~~~~~G~~ 312 (327)
T 2xbg_A 236 -ENWGELLSPLRRNSVGFLDLAYRTPNEVWLAGG-AGALL-CSQDGGQTWQQDVDVKKVPSNFYKILFFSPDQGFILGQK 312 (327)
T ss_dssp -EEECCCBCTTSSCCSCEEEEEESSSSCEEEEES-TTCEE-EESSTTSSCEECGGGTTSSSCCCEEEEEETTEEEEECST
T ss_pred -CeeEeccCCcccCCcceEEEEecCCCEEEEEeC-CCeEE-EeCCCCcccEEcCccCCCCCCeEEEEEECCCceEEEcCC
Confidence 111111110 01223588899998877776654 66663 33333322111110 11122222322 34556677788
Q ss_pred CeEEEEe
Q 047325 306 KTICVWR 312 (368)
Q Consensus 306 g~i~iw~ 312 (368)
|.|.-++
T Consensus 313 G~i~~~~ 319 (327)
T 2xbg_A 313 GILLRYV 319 (327)
T ss_dssp TEEEEEC
T ss_pred ceEEEEc
Confidence 9877664
No 279
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=98.19 E-value=0.0021 Score=54.59 Aligned_cols=182 Identities=13% Similarity=0.053 Sum_probs=107.0
Q ss_pred cCCCEeEEEEcCCCCEEEEEe-CCCcEEEEEccCC----eEEEEeecCCCceEEEEeCC-CC-eEEEEcCCCeEEEEEcC
Q 047325 153 HSDAVSCMSLDQDCGLLYTAS-WDRTFKVWRISDS----KCLESVSAHDDAVNSVVSSS-EG-LIFTGSADGTVKVWKRE 225 (368)
Q Consensus 153 ~~~~v~~~~~~~~~~~l~~~~-~d~~i~iwd~~~~----~~~~~~~~~~~~v~~~~~~~-~~-~l~~~~~dg~i~i~d~~ 225 (368)
....+..++|++.+..|+.+. ..+.|+.+++... .....+.........+++.+ .+ ++++-...+.|.+.+++
T Consensus 110 ~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavD~~~~~lY~~d~~~~~I~~~~~~ 189 (400)
T 3p5b_L 110 NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTK 189 (400)
T ss_dssp SCSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEECTT
T ss_pred ccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCCCCCcccEEEEecCCceEEEECCCCeEEEEeCC
Confidence 345678999998666665554 5678888888652 22333333345567788876 44 55566678899999886
Q ss_pred CCCCCcccccceeeccccccEEEEEEcCCCCEEEEec--CCCcEEEEeCCCccccceeeec-cceEEEEEEeCCCEEEEe
Q 047325 226 QHGKGTKHSLAQTLLKQECAVTALVVSSSRSIVYCGS--SDGLVNFWEREKQLSHGGVLKG-HKLAVLCLAAAGKLVFSG 302 (368)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~--~dg~i~i~d~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~ 302 (368)
... ........-.....++++|.+..|+... ..+.|...++............ ....-+++++++..|+.+
T Consensus 190 g~~------~~~l~~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~~~~~~~~~~l~~P~glavd~~~~~lY~a 263 (400)
T 3p5b_L 190 GVK------RKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWV 263 (400)
T ss_dssp TCS------EEEEEECSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSCSCEEEECSSCSCEEEEEEETTTTEEEEE
T ss_pred CCc------eEEEEeCCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCCccEEEEECCCCceEEEEEEeCCCEEEEE
Confidence 431 1111222334578999999666555544 2478998888754332111111 223347788777666665
Q ss_pred e-CCCeEEEEecCCCceeeeEeeeccccCeeEEEEecCC
Q 047325 303 S-ADKTICVWRRDGAIHTCLSVLTGHTGPVKCLAVEEDR 340 (368)
Q Consensus 303 ~-~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~l~~~~~~ 340 (368)
. ..+.|..+|++......+...........+|++..+.
T Consensus 264 D~~~~~I~~~d~dG~~~~~~~~~~~~l~~P~gl~v~~~~ 302 (400)
T 3p5b_L 264 DSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFEDK 302 (400)
T ss_dssp ETTTTEEEEEETTSCCCEEEEECSSTTSSEEEEEEETTE
T ss_pred ECCCCEEEEEeCCCCccEEEEeCCCCCCCCEEEEEeCCE
Confidence 4 5678999998765433333322223445677775443
No 280
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=98.19 E-value=0.0017 Score=53.26 Aligned_cols=216 Identities=9% Similarity=0.036 Sum_probs=120.0
Q ss_pred CCcEEEEcCCcce---ecccCCCCCeeEEEEe--CCEEE-EEeCCCeEEEEeecCCCccccccCCccccceeeeeccCCC
Q 047325 63 SKNIRVWKNLKEF---CGFKASSGLVKAIVIS--GEKIF-TGHQDGKIRVWKISPKNQSVHKRAGTLPTLKDIFKSSIKP 136 (368)
Q Consensus 63 dg~i~iw~~~~~~---~~~~~~~~~v~~~~~~--~~~l~-s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 136 (368)
...|+..++.... ...........+++|+ ++.|+ +-...+.|..++++.......
T Consensus 12 ~~~I~~i~l~~~~~~~~~~~~~~~~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~------------------- 72 (318)
T 3sov_A 12 RRDLRLVDATNGKENATIVVGGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQN------------------- 72 (318)
T ss_dssp EEEEEEEETTCTTSCCEEEEEEEEEEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCE-------------------
T ss_pred cCeEEEEECCCCceEEEEEecCCCccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEE-------------------
Confidence 3567777776431 1111122345677887 34444 445577888888765531100
Q ss_pred CceeEecccceeeeeecCCCEeEEEEcCCCC-EEEEEeCCCcEEEEEccCCeEEEEeecCCCceEEEEeCCCC-eEEEEc
Q 047325 137 SNYIEVRRHRTALWIRHSDAVSCMSLDQDCG-LLYTASWDRTFKVWRISDSKCLESVSAHDDAVNSVVSSSEG-LIFTGS 214 (368)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~ 214 (368)
...........+++.+.+. ++++-...+.|.++++........+.........+++.|.+ .|+.+.
T Consensus 73 ------------~~~~~l~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~~~~P~giavdp~~g~ly~td 140 (318)
T 3sov_A 73 ------------VVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTD 140 (318)
T ss_dssp ------------EEEECCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEEGGGTEEEEEE
T ss_pred ------------EEcCCCCCccEEEEEcCCCeEEEEECCCCEEEEEECCCCcEEEEEeCCCCCccEEEEeCCCCEEEEEe
Confidence 0001123456788887544 44444556789999986543333333344567889998854 555444
Q ss_pred --CCCeEEEEEcCCCCCCcccccceeeccccccEEEEEEcCCCCEEEE-ecCCCcEEEEeCCCccccceeeeccceEEEE
Q 047325 215 --ADGTVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSSSRSIVYC-GSSDGLVNFWEREKQLSHGGVLKGHKLAVLC 291 (368)
Q Consensus 215 --~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~-~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~ 291 (368)
..+.|...++..... .......-.....++++|++..|+. -...+.|..+|+...... .........-..
T Consensus 141 ~~~~~~I~r~~~dG~~~------~~~~~~~l~~Pnglavd~~~~~lY~aD~~~~~I~~~d~dG~~~~-~~~~~~~~~P~g 213 (318)
T 3sov_A 141 WGEVPKIERAGMDGSSR------FIIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQ-AVVKGSLPHPFA 213 (318)
T ss_dssp CSSSCEEEEEETTSCSC------EEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCE-EEECSCCSCEEE
T ss_pred cCCCCEEEEEEcCCCCe------EEEEECCCCCccEEEEeccCCEEEEEECCCCEEEEEcCCCCceE-EEecCCCCCceE
Confidence 357888888764311 1111122345689999996665554 456678999998743222 122211111223
Q ss_pred EEe-CCCEEEEeeCCCeEEEEecCCC
Q 047325 292 LAA-AGKLVFSGSADKTICVWRRDGA 316 (368)
Q Consensus 292 ~~~-~~~~l~~~~~dg~i~iw~~~~~ 316 (368)
++. .+.++++-...+.|..++..++
T Consensus 214 lav~~~~lywtd~~~~~V~~~~~~~G 239 (318)
T 3sov_A 214 LTLFEDILYWTDWSTHSILACNKYTG 239 (318)
T ss_dssp EEEETTEEEEEETTTTEEEEEETTTC
T ss_pred EEEeCCEEEEEecCCCeEEEEECCCC
Confidence 333 3445556556788998887544
No 281
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=98.10 E-value=0.00014 Score=66.27 Aligned_cols=182 Identities=12% Similarity=0.078 Sum_probs=93.3
Q ss_pred EeEEEEcCCCCEEEEEeC-CCcEEEEEccCCeEEEEeecCCCc-eEEEEeCCCC-eEEEEc-CC-----CeEEEEEcCCC
Q 047325 157 VSCMSLDQDCGLLYTASW-DRTFKVWRISDSKCLESVSAHDDA-VNSVVSSSEG-LIFTGS-AD-----GTVKVWKREQH 227 (368)
Q Consensus 157 v~~~~~~~~~~~l~~~~~-d~~i~iwd~~~~~~~~~~~~~~~~-v~~~~~~~~~-~l~~~~-~d-----g~i~i~d~~~~ 227 (368)
..++++..++++++.|+. +..+.+||..+.+-...-..+... -.+++..+++ .++.|+ .+ ..+.+||..+.
T Consensus 245 ~~~~~~~~~g~lyv~GG~~~~~v~~yd~~t~~W~~~~~~~~~R~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t~ 324 (656)
T 1k3i_A 245 CPGISMDGNGQIVVTGGNDAKKTSLYDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSK 324 (656)
T ss_dssp SCEEEECTTSCEEEECSSSTTCEEEEEGGGTEEEECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTT
T ss_pred cccccCCCCCCEEEeCCCCCCceEEecCcCCceeECCCCCccccccceEEecCCeEEEEeCcccCCcccccceEeCCCCC
Confidence 345677788999999884 458999999877543322212111 2344555566 666776 34 56899998754
Q ss_pred CCCcccccc---eeeccccccEEEEEEcCCCCEEEEecCC---------CcEEEEeCCCccccceeeecc----------
Q 047325 228 GKGTKHSLA---QTLLKQECAVTALVVSSSRSIVYCGSSD---------GLVNFWEREKQLSHGGVLKGH---------- 285 (368)
Q Consensus 228 ~~~~~~~~~---~~~~~~~~~i~~~~~~~~~~~l~~~~~d---------g~i~i~d~~~~~~~~~~~~~~---------- 285 (368)
.- ..... ..+..... ...+..++..++.|+.+ ..+..||..+..... ....+
T Consensus 325 ~W--~~~~~~~~~p~~~~~~---~~~~~~~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w~~-~~~~~~~~~~~~~~~ 398 (656)
T 1k3i_A 325 TW--TSLPNAKVNPMLTADK---QGLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVK-SAGKRQSNRGVAPDA 398 (656)
T ss_dssp EE--EEETTSCSGGGCCCCT---TGGGTTTCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEE-EEEECEETTEECCCC
T ss_pred cc--eeCCCccccccccccc---cceeecCCceEEEECCCCcEEEecCccceeeeecCCcceee-cCCccccccccCCCC
Confidence 21 00000 00000000 01122344544555444 356788877543221 11111
Q ss_pred -ceEEEEEE-eCCCEEEEeeCCC-----------eEEEEecCCCceeeeE--eeeccccC-eeEEEEecCCeeeecC
Q 047325 286 -KLAVLCLA-AAGKLVFSGSADK-----------TICVWRRDGAIHTCLS--VLTGHTGP-VKCLAVEEDRDSSSST 346 (368)
Q Consensus 286 -~~~~~~~~-~~~~~l~~~~~dg-----------~i~iw~~~~~~~~~~~--~~~~h~~~-v~~l~~~~~~~~~~~~ 346 (368)
......+. .++++++.|+.++ .|.+||..+.....+. .+ +... -.+++..|++++++.+
T Consensus 399 ~~~~av~~~~~~~~i~v~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~m--p~~R~~~~~~~l~~g~i~v~G 473 (656)
T 1k3i_A 399 MCGNAVMYDAVKGKILTFGGSPDYQDSDATTNAHIITLGEPGTSPNTVFASNGL--YFARTFHTSVVLPDGSTFITG 473 (656)
T ss_dssp BTCEEEEEETTTTEEEEECCBSSSSSSBCCCCEEEEECCSTTSCCEEEECTTCC--SSCCBSCEEEECTTSCEEEEC
T ss_pred CCCceEeccCCCCeEEEEeCCCCCCCCCcCCcceEEEcCCCCCCCeeEEccCCC--CCCcccCCeEECCCCCEEEEC
Confidence 11222222 3688888888543 6778877665443332 11 1222 2345666788855444
No 282
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=98.09 E-value=0.0029 Score=52.19 Aligned_cols=260 Identities=7% Similarity=-0.015 Sum_probs=125.4
Q ss_pred CCcEEEEEec-CC-EEEEccCCCcEEEEcCC-cc--eecc--cCCCCCeeEEEEeCCEEEEEeCCCeEEEEeecCCCccc
Q 047325 44 EGHIYSLAAS-KD-LLYTGSDSKNIRVWKNL-KE--FCGF--KASSGLVKAIVISGEKIFTGHQDGKIRVWKISPKNQSV 116 (368)
Q Consensus 44 ~~~i~~~~~~-~~-~l~s~~~dg~i~iw~~~-~~--~~~~--~~~~~~v~~~~~~~~~l~s~~~dg~i~vw~~~~~~~~~ 116 (368)
...+.+|.|. ++ .++ ++.+|.|....-. +. .... ......+.++.+.++.++.++.+|.|.. ..+.++.-.
T Consensus 35 ~~~~~~v~~~~~~~~~~-~G~~g~i~~s~DgG~tW~~~~~~~~~~~~~~~~i~~~~~~~~~~g~~g~i~~-S~DgG~tW~ 112 (327)
T 2xbg_A 35 TATILDMSFIDRHHGWL-VGVNATLMETRDGGQTWEPRTLVLDHSDYRFNSVSFQGNEGWIVGEPPIMLH-TTDGGQSWS 112 (327)
T ss_dssp SSCEEEEEESSSSCEEE-EETTTEEEEESSTTSSCEECCCCCSCCCCEEEEEEEETTEEEEEEETTEEEE-ESSTTSSCE
T ss_pred CCcEEEEEECCCCcEEE-EcCCCeEEEeCCCCCCCeECCCCCCCCCccEEEEEecCCeEEEEECCCeEEE-ECCCCCCce
Confidence 3468889885 33 555 4556765332211 11 1111 1234568889888666666666775543 222232111
Q ss_pred cccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcCCCCEEEEEeCCCcEEEEEccCCeEEEEe-ecC
Q 047325 117 HKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCGLLYTASWDRTFKVWRISDSKCLESV-SAH 195 (368)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~-~~~ 195 (368)
...... .+...+..+.+.+++..++++ .++.|..- ...++.-... ...
T Consensus 113 ~~~~~~-----------------------------~~~~~~~~i~~~~~~~~~~~~-~~g~v~~S-~DgG~tW~~~~~~~ 161 (327)
T 2xbg_A 113 QIPLDP-----------------------------KLPGSPRLIKALGNGSAEMIT-NVGAIYRT-KDSGKNWQALVQEA 161 (327)
T ss_dssp ECCCCT-----------------------------TCSSCEEEEEEEETTEEEEEE-TTCCEEEE-SSTTSSEEEEECSC
T ss_pred ECcccc-----------------------------CCCCCeEEEEEECCCCEEEEe-CCccEEEE-cCCCCCCEEeecCC
Confidence 111000 022335566666666555544 45654321 1223222222 234
Q ss_pred CCceEEEEeCCCCeEEEEcCCCeEEEE-EcCCCCCCcccccceeeccccccEEEEEEcCCCCEEEEecCCCcEEEEeCCC
Q 047325 196 DDAVNSVVSSSEGLIFTGSADGTVKVW-KREQHGKGTKHSLAQTLLKQECAVTALVVSSSRSIVYCGSSDGLVNFWEREK 274 (368)
Q Consensus 196 ~~~v~~~~~~~~~~l~~~~~dg~i~i~-d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~ 274 (368)
...+..+.+.+++.++..+.+|.+..- |- ++. ..... .......+..+.+.++++.++. +.+|.+++.+...
T Consensus 162 ~~~~~~~~~~~~~~~~~~g~~G~~~~S~d~--gG~--tW~~~--~~~~~~~~~~~~~~~~g~~~~~-~~~G~~~~s~~D~ 234 (327)
T 2xbg_A 162 IGVMRNLNRSPSGEYVAVSSRGSFYSTWEP--GQT--AWEPH--NRTTSRRLHNMGFTPDGRLWMI-VNGGKIAFSDPDN 234 (327)
T ss_dssp CCCEEEEEECTTSCEEEEETTSSEEEEECT--TCS--SCEEE--ECCSSSCEEEEEECTTSCEEEE-ETTTEEEEEETTE
T ss_pred CcceEEEEEcCCCcEEEEECCCcEEEEeCC--CCC--ceeEC--CCCCCCccceeEECCCCCEEEE-eCCceEEEecCCC
Confidence 557889999998844444455555443 32 011 11111 1234456888999998876654 4578777764322
Q ss_pred ccccceeeec---cceEEEEEEe--CCCEEEEeeCCCeEEEEecCCC-ceeeeEeeeccccCeeEEEEecCCeeeec
Q 047325 275 QLSHGGVLKG---HKLAVLCLAA--AGKLVFSGSADKTICVWRRDGA-IHTCLSVLTGHTGPVKCLAVEEDRDSSSS 345 (368)
Q Consensus 275 ~~~~~~~~~~---~~~~~~~~~~--~~~~l~~~~~dg~i~iw~~~~~-~~~~~~~~~~h~~~v~~l~~~~~~~~~~~ 345 (368)
+..-...... +...+.++.+ ++.+++++ .+|.|. +..+.+ ....+.........+.++.|.+++..++.
T Consensus 235 G~tW~~~~~~~~~~~~~~~~v~~~~~~~~~~~g-~~g~i~-~S~DgG~tW~~~~~~~~~~~~~~~v~~~~~~~~~~~ 309 (327)
T 2xbg_A 235 SENWGELLSPLRRNSVGFLDLAYRTPNEVWLAG-GAGALL-CSQDGGQTWQQDVDVKKVPSNFYKILFFSPDQGFIL 309 (327)
T ss_dssp EEEECCCBCTTSSCCSCEEEEEESSSSCEEEEE-STTCEE-EESSTTSSCEECGGGTTSSSCCCEEEEEETTEEEEE
T ss_pred CCeeEeccCCcccCCcceEEEEecCCCEEEEEe-CCCeEE-EeCCCCcccEEcCccCCCCCCeEEEEEECCCceEEE
Confidence 2211111111 1123444443 55555554 477663 333432 22222111123456888999877764433
No 283
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=98.09 E-value=0.0018 Score=52.66 Aligned_cols=152 Identities=11% Similarity=0.110 Sum_probs=78.4
Q ss_pred CCCEEEEEeCC-----CcEEEEEccCCeEEE--EeecCCCceEEEEeCCCC-eEEEEcCC-----CeEEEEEcCCCCCCc
Q 047325 165 DCGLLYTASWD-----RTFKVWRISDSKCLE--SVSAHDDAVNSVVSSSEG-LIFTGSAD-----GTVKVWKREQHGKGT 231 (368)
Q Consensus 165 ~~~~l~~~~~d-----~~i~iwd~~~~~~~~--~~~~~~~~v~~~~~~~~~-~l~~~~~d-----g~i~i~d~~~~~~~~ 231 (368)
+++.++.|+.+ ..+.+||+.+.+-.. .+......-.++.. ++ .++.|+.+ ..+.+||+.+..-
T Consensus 112 ~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~d~~~~~W-- 187 (301)
T 2vpj_A 112 GDMIYVSGGFDGSRRHTSMERYDPNIDQWSMLGDMQTAREGAGLVVA--SGVIYCLGGYDGLNILNSVEKYDPHTGHW-- 187 (301)
T ss_dssp TTEEEEECCBCSSCBCCEEEEEETTTTEEEEEEECSSCCBSCEEEEE--TTEEEEECCBCSSCBCCCEEEEETTTTEE--
T ss_pred CCEEEEEcccCCCcccceEEEEcCCCCeEEECCCCCCCcccceEEEE--CCEEEEECCCCCCcccceEEEEeCCCCcE--
Confidence 45666666643 368899988765332 22211111122222 44 56666554 4688899875421
Q ss_pred ccccceeeccccccEEEEEEcCCCCEEEEecCC-----CcEEEEeCCCccccce-eeeccceEEEEEEeCCCEEEEeeCC
Q 047325 232 KHSLAQTLLKQECAVTALVVSSSRSIVYCGSSD-----GLVNFWEREKQLSHGG-VLKGHKLAVLCLAAAGKLVFSGSAD 305 (368)
Q Consensus 232 ~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d-----g~i~i~d~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~d 305 (368)
...............+.+ ++++++.|+.+ ..+.+||+++..-... ..........+...++++++.|+.+
T Consensus 188 --~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~i~v~GG~~ 263 (301)
T 2vpj_A 188 --TNVTPMATKRSGAGVALL--NDHIYVVGGFDGTAHLSSVEAYNIRTDSWTTVTSMTTPRCYVGATVLRGRLYAIAGYD 263 (301)
T ss_dssp --EEECCCSSCCBSCEEEEE--TTEEEEECCBCSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEECCBC
T ss_pred --EeCCCCCcccccceEEEE--CCEEEEEeCCCCCcccceEEEEeCCCCcEEECCCCCCcccceeEEEECCEEEEEcCcC
Confidence 111111111112222222 56777777764 4689999886432211 1111111112334578888888765
Q ss_pred -----CeEEEEecCCCceeeeEee
Q 047325 306 -----KTICVWRRDGAIHTCLSVL 324 (368)
Q Consensus 306 -----g~i~iw~~~~~~~~~~~~~ 324 (368)
..+.+||+++.....+..+
T Consensus 264 ~~~~~~~v~~yd~~~~~W~~~~~~ 287 (301)
T 2vpj_A 264 GNSLLSSIECYDPIIDSWEVVTSM 287 (301)
T ss_dssp SSSBEEEEEEEETTTTEEEEEEEE
T ss_pred CCcccccEEEEcCCCCeEEEcCCC
Confidence 4578888877765555443
No 284
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=98.08 E-value=0.0029 Score=51.91 Aligned_cols=215 Identities=11% Similarity=0.057 Sum_probs=119.4
Q ss_pred CcEEEEcCCcc-eecccCCCCCeeEEEEe--CCEEEEE-eCCCeEEEEeecCCCccccccCCccccceeeeeccCCCCce
Q 047325 64 KNIRVWKNLKE-FCGFKASSGLVKAIVIS--GEKIFTG-HQDGKIRVWKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNY 139 (368)
Q Consensus 64 g~i~iw~~~~~-~~~~~~~~~~v~~~~~~--~~~l~s~-~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (368)
..|+..|+... ...+........+++|+ ++.|+.+ ..++.|..++++........
T Consensus 10 ~~I~~i~~~~~~~~~~~~~~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~--------------------- 68 (316)
T 1ijq_A 10 HEVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSY--------------------- 68 (316)
T ss_dssp SSEEEEETTSCCCEEEECSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------C---------------------
T ss_pred CeEEEEECCCcceEehhcCCCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCccc---------------------
Confidence 45777776643 22222234557788887 4555544 45688998888752100000
Q ss_pred eEecccceeeeeecCCCEeEEEEcCCCCEE-EEEeCCCcEEEEEccCCeEEEEeecCCCceEEEEeCCCC-eEEEEcC-C
Q 047325 140 IEVRRHRTALWIRHSDAVSCMSLDQDCGLL-YTASWDRTFKVWRISDSKCLESVSAHDDAVNSVVSSSEG-LIFTGSA-D 216 (368)
Q Consensus 140 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~-d 216 (368)
.............+++.+.+..| ++-...+.|.+.|+........+.........+++.|.+ .|+.+.. .
T Consensus 69 -------~~~~~~~~~~p~glavd~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~iavdp~~g~ly~~d~~~ 141 (316)
T 1ijq_A 69 -------DTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGT 141 (316)
T ss_dssp -------EEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSS
T ss_pred -------EEEEeCCCCCcCEEEEeecCCeEEEEECCCCEEEEEeCCCCceEEEEECCCCCcceEEeCCCCCEEEEEccCC
Confidence 00000011345678898755544 444567899999987544433343334567899999854 4444443 3
Q ss_pred -CeEEEEEcCCCCCCcccccceee-ccccccEEEEEEcCCCCEEEEe-cCCCcEEEEeCCCccccceeee-----ccceE
Q 047325 217 -GTVKVWKREQHGKGTKHSLAQTL-LKQECAVTALVVSSSRSIVYCG-SSDGLVNFWEREKQLSHGGVLK-----GHKLA 288 (368)
Q Consensus 217 -g~i~i~d~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~l~~~-~~dg~i~i~d~~~~~~~~~~~~-----~~~~~ 288 (368)
+.|...++.... ...+ ...-.....+++++++..|+.+ ...+.|..+|+...... .... .|+..
T Consensus 142 ~~~I~~~~~dG~~-------~~~~~~~~~~~P~gla~d~~~~~lY~~D~~~~~I~~~d~dg~~~~-~~~~~~~~~~~P~g 213 (316)
T 1ijq_A 142 PAKIKKGGLNGVD-------IYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRK-TILEDEKRLAHPFS 213 (316)
T ss_dssp SCEEEEEETTSCC-------EEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCE-EEEECTTTTSSEEE
T ss_pred CCeEEEEcCCCCC-------eEEEEECCCCCceEEEEeccCCEEEEEECCCCeEEEEecCCCceE-EEeecCCccCCcEE
Confidence 788888875321 1111 1223457899999876665544 45678999998753221 1211 12222
Q ss_pred EEEEEeCCCEEEEeeCCCeEEEEecCCC
Q 047325 289 VLCLAAAGKLVFSGSADKTICVWRRDGA 316 (368)
Q Consensus 289 ~~~~~~~~~~l~~~~~dg~i~iw~~~~~ 316 (368)
+++ ..+.++++-...+.|..++..++
T Consensus 214 -iav-~~~~ly~~d~~~~~V~~~~~~~g 239 (316)
T 1ijq_A 214 -LAV-FEDKVFWTDIINEAIFSANRLTG 239 (316)
T ss_dssp -EEE-ETTEEEEEETTTTEEEEEETTTC
T ss_pred -EEE-ECCEEEEEECCCCeEEEEeCCCC
Confidence 333 24555556666788988886544
No 285
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=98.05 E-value=0.0046 Score=53.09 Aligned_cols=193 Identities=8% Similarity=0.077 Sum_probs=107.9
Q ss_pred cEEEEEecC----CEEEEccCCCcEEEEcCC-cceecccCCCCCeeEEEEe--CCEEEEEeCCC----e-EEEEeecCCC
Q 047325 46 HIYSLAASK----DLLYTGSDSKNIRVWKNL-KEFCGFKASSGLVKAIVIS--GEKIFTGHQDG----K-IRVWKISPKN 113 (368)
Q Consensus 46 ~i~~~~~~~----~~l~s~~~dg~i~iw~~~-~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg----~-i~vw~~~~~~ 113 (368)
....|++++ ..|+.+...+.|+.+|.. ..+..+.........++++ ++ |+.+...+ . +...+.....
T Consensus 140 ~P~gvavd~~s~~g~Lyv~D~~~~I~~id~~~g~v~~~~~~~~~P~giavd~dG~-lyVad~~~~~~~~gv~~~~~~~~~ 218 (433)
T 4hw6_A 140 NIWRMMFDPNSNYDDLYWVGQRDAFRHVDFVNQYVDIKTTNIGQCADVNFTLNGD-MVVVDDQSSDTNTGIYLFTRASGF 218 (433)
T ss_dssp CCCEEEECTTTTTCEEEEECBTSCEEEEETTTTEEEEECCCCSCEEEEEECTTCC-EEEEECCSCTTSEEEEEECGGGTT
T ss_pred CCceEEEccccCCCEEEEEeCCCCEEEEECCCCEEEEeecCCCCccEEEECCCCC-EEEEcCCCCcccceEEEEECCCCe
Confidence 345778875 345444444889999884 3444444445567888887 55 55554322 1 2222211110
Q ss_pred ccccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcC-CCCEEEEEeCCCcEEEEEccCCeEEEEe
Q 047325 114 QSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQ-DCGLLYTASWDRTFKVWRISDSKCLESV 192 (368)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~ 192 (368)
. . ...+ ........++++| ++.++++-..++.|+.+|..++.....+
T Consensus 219 ~-~------------------------------~~~~-~~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~ 266 (433)
T 4hw6_A 219 T-E------------------------------RLSL-CNARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEE 266 (433)
T ss_dssp C-C------------------------------EEEE-EECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEEE
T ss_pred e-c------------------------------cccc-cccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEE
Confidence 0 0 0000 0223446688999 6665555556788999999877653222
Q ss_pred -ec-CCCceEEEEeCCCC-eEE-EEcCCCeEEEEEcCCCCCCcccccceeecc---------------ccccEEEEEE--
Q 047325 193 -SA-HDDAVNSVVSSSEG-LIF-TGSADGTVKVWKREQHGKGTKHSLAQTLLK---------------QECAVTALVV-- 251 (368)
Q Consensus 193 -~~-~~~~v~~~~~~~~~-~l~-~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~---------------~~~~i~~~~~-- 251 (368)
.. ....-..++++|++ .|+ +-...+.|+.++........ .....+.+ .-.....+++
T Consensus 267 ~~~~~~~~~~~ia~dpdG~~LYvad~~~~~I~~~~~d~~~~~~--~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~ 344 (433)
T 4hw6_A 267 VMMDTKGSNFHIVWHPTGDWAYIIYNGKHCIYRVDYNRETGKL--AVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVK 344 (433)
T ss_dssp EECSCCSSCEEEEECTTSSEEEEEETTTTEEEEEEBCTTTCCB--CCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEE
T ss_pred eccCCCCCcccEEEeCCCCEEEEEeCCCCEEEEEeCCCCCccc--CcEEEEEecCCCCccCCCcccceEEcCCccEEEEc
Confidence 21 12223469999998 344 44557899998875321100 00000000 1123667888
Q ss_pred -------cCCCCEEEEecCCCcEEEEeCC
Q 047325 252 -------SSSRSIVYCGSSDGLVNFWERE 273 (368)
Q Consensus 252 -------~~~~~~l~~~~~dg~i~i~d~~ 273 (368)
.+++++.++-...+.|+.++..
T Consensus 345 n~~y~~dd~~g~lyvaD~~n~~I~~~~~~ 373 (433)
T 4hw6_A 345 NEAYAGEEDEYDFYFCDRDSHTVRVLTPE 373 (433)
T ss_dssp CGGGTTSSCCEEEEEEETTTTEEEEECTT
T ss_pred cccccccCCCCcEEEEECCCCEEEEECCC
Confidence 7777777777777889998853
No 286
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=98.04 E-value=0.0023 Score=52.14 Aligned_cols=156 Identities=9% Similarity=0.115 Sum_probs=81.1
Q ss_pred CCCEEEEEeCC------CcEEEEEccCCeEEEE--eecCCCceEEEEeCCCC-eEEEEcC---------CCeEEEEEcCC
Q 047325 165 DCGLLYTASWD------RTFKVWRISDSKCLES--VSAHDDAVNSVVSSSEG-LIFTGSA---------DGTVKVWKREQ 226 (368)
Q Consensus 165 ~~~~l~~~~~d------~~i~iwd~~~~~~~~~--~~~~~~~v~~~~~~~~~-~l~~~~~---------dg~i~i~d~~~ 226 (368)
++++++.|+.+ ..+.+||+.+.+-... +......-.++. . ++ .++.|+. -..+.+||+.+
T Consensus 101 ~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~-~-~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~ 178 (306)
T 3ii7_A 101 EGKIYTSGGSEVGNSALYLFECYDTRTESWHTKPSMLTQRCSHGMVE-A-NGLIYVCGGSLGNNVSGRVLNSCEVYDPAT 178 (306)
T ss_dssp TTEEEEECCBBTTBSCCCCEEEEETTTTEEEEECCCSSCCBSCEEEE-E-TTEEEEECCEESCTTTCEECCCEEEEETTT
T ss_pred CCEEEEECCCCCCCcEeeeEEEEeCCCCceEeCCCCcCCcceeEEEE-E-CCEEEEECCCCCCCCcccccceEEEeCCCC
Confidence 55667777654 4688999887653322 211111112222 2 44 5555543 34588899875
Q ss_pred CCCCcccccceeeccccccEEEEEEcCCCCEEEEecCC-----CcEEEEeCCCccccc-eeeeccceEEEEEEeCCCEEE
Q 047325 227 HGKGTKHSLAQTLLKQECAVTALVVSSSRSIVYCGSSD-----GLVNFWEREKQLSHG-GVLKGHKLAVLCLAAAGKLVF 300 (368)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d-----g~i~i~d~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~ 300 (368)
.. ................+.+ ++++++.|+.+ ..+.+||+.+..-.. ...........+...++++++
T Consensus 179 ~~----W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~i~v 252 (306)
T 3ii7_A 179 ET----WTELCPMIEARKNHGLVFV--KDKIFAVGGQNGLGGLDNVEYYDIKLNEWKMVSPMPWKGVTVKCAAVGSIVYV 252 (306)
T ss_dssp TE----EEEECCCSSCCBSCEEEEE--TTEEEEECCEETTEEBCCEEEEETTTTEEEECCCCSCCBSCCEEEEETTEEEE
T ss_pred Ce----EEECCCccchhhcceEEEE--CCEEEEEeCCCCCCCCceEEEeeCCCCcEEECCCCCCCccceeEEEECCEEEE
Confidence 42 1111111111112222222 56677777654 358899987643211 111111111223334788888
Q ss_pred EeeCC-----CeEEEEecCCCceeeeEeeeccc
Q 047325 301 SGSAD-----KTICVWRRDGAIHTCLSVLTGHT 328 (368)
Q Consensus 301 ~~~~d-----g~i~iw~~~~~~~~~~~~~~~h~ 328 (368)
.|+.+ ..+.+||..+.....+..+....
T Consensus 253 ~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r 285 (306)
T 3ii7_A 253 LAGFQGVGRLGHILEYNTETDKWVANSKVRAFP 285 (306)
T ss_dssp EECBCSSSBCCEEEEEETTTTEEEEEEEEECCS
T ss_pred EeCcCCCeeeeeEEEEcCCCCeEEeCCCccccc
Confidence 88854 56889999887777666554333
No 287
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=98.03 E-value=0.005 Score=52.87 Aligned_cols=148 Identities=7% Similarity=-0.003 Sum_probs=86.8
Q ss_pred EEEEEecC---CEEEEccCCCcEEEEcCCc-ceecccCCCCCeeEEEEe--CCEEEEEeCC-C----eEEEEeecCCCcc
Q 047325 47 IYSLAASK---DLLYTGSDSKNIRVWKNLK-EFCGFKASSGLVKAIVIS--GEKIFTGHQD-G----KIRVWKISPKNQS 115 (368)
Q Consensus 47 i~~~~~~~---~~l~s~~~dg~i~iw~~~~-~~~~~~~~~~~v~~~~~~--~~~l~s~~~d-g----~i~vw~~~~~~~~ 115 (368)
...|++++ ..|+.+...+.|+.+|+.. .+..+.........++++ +++|+.+... + .+.+.+. .+...
T Consensus 139 P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~v~~~~~~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~-~g~~~ 217 (430)
T 3tc9_A 139 AVWLSFDPKNHNHLYLVGEQHPTRLIDFEKEYVSTVYSGLSKVRTICWTHEADSMIITNDQNNNDRPNNYILTR-ESGFK 217 (430)
T ss_dssp CCEEEEETTEEEEEEEEEBTEEEEEEETTTTEEEEEECCCSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEEG-GGTSC
T ss_pred CCEEEECCCCCCeEEEEeCCCcEEEEECCCCEEEEEecCCCCcceEEEeCCCCEEEEEeCCCCcccceEEEEeC-CCcee
Confidence 45677774 2455444447888888875 334444445567788887 6656666542 1 2322332 22110
Q ss_pred ccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcC-CCCEEEEEeCCCcEEEEEccCCeEEEEeec
Q 047325 116 VHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQ-DCGLLYTASWDRTFKVWRISDSKCLESVSA 194 (368)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~ 194 (368)
.. ..+. .......++++| ++.++++-..++.|..+|...+........
T Consensus 218 ~~------------------------------~~l~-~~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~~~~~ 266 (430)
T 3tc9_A 218 VI------------------------------TELT-KGQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETTPLFTI 266 (430)
T ss_dssp SE------------------------------EEEE-ECSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEEEEEC
T ss_pred ee------------------------------eeec-cCCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEEEEEc
Confidence 00 0000 123346788999 666666655678999999987765332222
Q ss_pred -CCCceEEEEeCCCC-eE-EEEcCCCeEEEEEcCC
Q 047325 195 -HDDAVNSVVSSSEG-LI-FTGSADGTVKVWKREQ 226 (368)
Q Consensus 195 -~~~~v~~~~~~~~~-~l-~~~~~dg~i~i~d~~~ 226 (368)
.......++++|++ .| ++-...+.|..++.+.
T Consensus 267 ~~~~~P~gia~~pdG~~lyv~d~~~~~I~~~~~d~ 301 (430)
T 3tc9_A 267 QDSGWEFHIQFHPSGNYAYIVVVNQHYILRSDYDW 301 (430)
T ss_dssp SSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEET
T ss_pred CCCCcceeEEEcCCCCEEEEEECCCCEEEEEeCCc
Confidence 22346789999999 34 4445678999988753
No 288
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=98.01 E-value=0.0026 Score=59.00 Aligned_cols=189 Identities=14% Similarity=0.110 Sum_probs=98.9
Q ss_pred cEEEEEec-CC--EEEEc-cCC----CcEEEEcCCcc-eecccCC-CCCeeEEEEe--CCEEEEEeCC-----CeEEEEe
Q 047325 46 HIYSLAAS-KD--LLYTG-SDS----KNIRVWKNLKE-FCGFKAS-SGLVKAIVIS--GEKIFTGHQD-----GKIRVWK 108 (368)
Q Consensus 46 ~i~~~~~~-~~--~l~s~-~~d----g~i~iw~~~~~-~~~~~~~-~~~v~~~~~~--~~~l~s~~~d-----g~i~vw~ 108 (368)
.+...+++ ++ +||-+ ..+ .+|+++|+.+. .. +... ......+.|+ ++.|+....| ..|.+++
T Consensus 175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~-l~~~~~~~~~~~~WspDg~~l~y~~~d~~~~~~~v~~~~ 253 (751)
T 2xe4_A 175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQT-IADKVSGTNGEIVWGPDHTSLFYVTKDETLRENKVWRHV 253 (751)
T ss_dssp EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCC-CCCCEEEECSCCEECSSTTEEEEEEECTTCCEEEEEEEE
T ss_pred EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEe-CCccccCceeeEEEecCCCEEEEEEECCCCCCCEEEEEE
Confidence 46667777 65 55532 222 35999998765 31 1111 1113456676 6677666654 2466666
Q ss_pred ecCCCccccccCCccccceeeeeccCCCCceeEecccceeeee-ecCCCEeEEEEcCCCCEEEEEeC---CCcEEEEEcc
Q 047325 109 ISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWI-RHSDAVSCMSLDQDCGLLYTASW---DRTFKVWRIS 184 (368)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~---d~~i~iwd~~ 184 (368)
+.++..... .++. ........+.|+||+++|+..+. ...|.++|+.
T Consensus 254 lgt~~~~~~------------------------------lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~ 303 (751)
T 2xe4_A 254 MGKLQSEDV------------------------------CLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLR 303 (751)
T ss_dssp TTSCGGGCE------------------------------EEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESS
T ss_pred CCCCchhcE------------------------------EEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECC
Confidence 655431100 0111 02234567899999998877653 3468889987
Q ss_pred CC--eE--EEEeecCCCceEEEEeCCCC-eEEEEcCC----CeEEEEEcCCCCCCccccccee-eccc--cccEEEEEEc
Q 047325 185 DS--KC--LESVSAHDDAVNSVVSSSEG-LIFTGSAD----GTVKVWKREQHGKGTKHSLAQT-LLKQ--ECAVTALVVS 252 (368)
Q Consensus 185 ~~--~~--~~~~~~~~~~v~~~~~~~~~-~l~~~~~d----g~i~i~d~~~~~~~~~~~~~~~-~~~~--~~~i~~~~~~ 252 (368)
++ +. .............+.|+.++ +++....+ ..|..+|+..... ... +..+ ...+..+.+.
T Consensus 304 ~~~~~~~~~~l~~~~~~~~~s~~~~~g~~l~~~t~~~~a~~~~L~~~d~~~~~~------~~~~li~~~~~~~l~~~~~~ 377 (751)
T 2xe4_A 304 KGNAHNTLEIVRPREKGVRYDVQMHGTSHLVILTNEGGAVNHKLLIAPRGQPSD------WSHVLVDHSEDVFMESIAVR 377 (751)
T ss_dssp SCTTCCCEEESSCCCTTCCEEEEEETTTEEEEEECTTTCTTCEEEEEETTSTTC------CCCEEECCCSSEEEEEEEEC
T ss_pred CCCCCceeEEeecCCCCceEEEeeeeCCEEEEEeCCCCCCCcEEEEEcCCCccc------ceeeEECCCCCcEEEEEEEE
Confidence 75 23 22233344555666655555 44444433 3666777653211 111 1122 2245556554
Q ss_pred CCCCEEEEecCCCc--EEEEeC
Q 047325 253 SSRSIVYCGSSDGL--VNFWER 272 (368)
Q Consensus 253 ~~~~~l~~~~~dg~--i~i~d~ 272 (368)
.+.++++...++. |.++++
T Consensus 378 -~~~lv~~~~~~g~~~l~~~dl 398 (751)
T 2xe4_A 378 -SNYLVVAGRRAGLTRIWTMMA 398 (751)
T ss_dssp -SSEEEEEEEETTEEEEEEEEC
T ss_pred -CCEEEEEEEeCCEEEEEEEec
Confidence 3345566667775 455664
No 289
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=97.97 E-value=0.001 Score=57.22 Aligned_cols=153 Identities=9% Similarity=0.052 Sum_probs=92.1
Q ss_pred CEeEEEEcCC--CCEEEEEeCCCcEEEEEccCCeEEEEeecCCCceEEEEeCCCCeEEEEcCCC-----eEEEEEcCCCC
Q 047325 156 AVSCMSLDQD--CGLLYTASWDRTFKVWRISDSKCLESVSAHDDAVNSVVSSSEGLIFTGSADG-----TVKVWKREQHG 228 (368)
Q Consensus 156 ~v~~~~~~~~--~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~dg-----~i~i~d~~~~~ 228 (368)
....++++|+ ...|+.+...+.|+.+|+.+++...... .......+++.+++.|+.+...+ .+...+.....
T Consensus 140 ~P~gvavd~~s~~g~Lyv~D~~~~I~~id~~~g~v~~~~~-~~~~P~giavd~dG~lyVad~~~~~~~~gv~~~~~~~~~ 218 (433)
T 4hw6_A 140 NIWRMMFDPNSNYDDLYWVGQRDAFRHVDFVNQYVDIKTT-NIGQCADVNFTLNGDMVVVDDQSSDTNTGIYLFTRASGF 218 (433)
T ss_dssp CCCEEEECTTTTTCEEEEECBTSCEEEEETTTTEEEEECC-CCSCEEEEEECTTCCEEEEECCSCTTSEEEEEECGGGTT
T ss_pred CCceEEEccccCCCEEEEEeCCCCEEEEECCCCEEEEeec-CCCCccEEEECCCCCEEEEcCCCCcccceEEEEECCCCe
Confidence 4568999984 4566666555899999998877655443 44567899999999444444321 23333332110
Q ss_pred CCcccccceeeccccccEEEEEEcC-CCCEEEEecCCCcEEEEeCCCccccceeee--c-cceEEEEEEeCCCEEEEe-e
Q 047325 229 KGTKHSLAQTLLKQECAVTALVVSS-SRSIVYCGSSDGLVNFWEREKQLSHGGVLK--G-HKLAVLCLAAAGKLVFSG-S 303 (368)
Q Consensus 229 ~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~--~-~~~~~~~~~~~~~~l~~~-~ 303 (368)
. ....+. .-.....++++| ++++.++-..++.|+.+|..++........ . ....-++++++++.|+.+ .
T Consensus 219 ~-----~~~~~~-~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~~~~~~~ia~dpdG~~LYvad~ 292 (433)
T 4hw6_A 219 T-----ERLSLC-NARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEEVMMDTKGSNFHIVWHPTGDWAYIIYN 292 (433)
T ss_dssp C-----CEEEEE-ECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEEEEECSCCSSCEEEEECTTSSEEEEEET
T ss_pred e-----cccccc-ccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEEeccCCCCCcccEEEeCCCCEEEEEeC
Confidence 0 001111 123346688899 677666666778899999875543111111 1 111237788899855544 5
Q ss_pred CCCeEEEEecCC
Q 047325 304 ADKTICVWRRDG 315 (368)
Q Consensus 304 ~dg~i~iw~~~~ 315 (368)
..+.|+.++++.
T Consensus 293 ~~~~I~~~~~d~ 304 (433)
T 4hw6_A 293 GKHCIYRVDYNR 304 (433)
T ss_dssp TTTEEEEEEBCT
T ss_pred CCCEEEEEeCCC
Confidence 578899988763
No 290
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=97.95 E-value=0.012 Score=54.47 Aligned_cols=218 Identities=11% Similarity=0.049 Sum_probs=121.2
Q ss_pred CcEEEEcCCcc-eecccCCCCCeeEEEEe--CCEEE-EEeCCCeEEEEeecCCCccccccCCccccceeeeeccCCCCce
Q 047325 64 KNIRVWKNLKE-FCGFKASSGLVKAIVIS--GEKIF-TGHQDGKIRVWKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNY 139 (368)
Q Consensus 64 g~i~iw~~~~~-~~~~~~~~~~v~~~~~~--~~~l~-s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (368)
..|+..++... ...+......+.+|+++ ++.|+ +-...+.|+.+++.........
T Consensus 404 ~~Ir~i~l~~~~~~~l~~~~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~--------------------- 462 (791)
T 3m0c_C 404 HEVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSY--------------------- 462 (791)
T ss_dssp SSEEEECTTSCCCEEEECSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------C---------------------
T ss_pred cceeEeeccCCcceeeecCCCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcce---------------------
Confidence 45777776532 22333345567788887 44444 4445678888887653210000
Q ss_pred eEecccceeeeeecCCCEeEEEEcCCCCEEEEE-eCCCcEEEEEccCCeEEEEeecCCCceEEEEeCCC-CeEEEEc-C-
Q 047325 140 IEVRRHRTALWIRHSDAVSCMSLDQDCGLLYTA-SWDRTFKVWRISDSKCLESVSAHDDAVNSVVSSSE-GLIFTGS-A- 215 (368)
Q Consensus 140 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~-~~l~~~~-~- 215 (368)
..+..........|++.+.+..|+.+ ...+.|.+.++........+.........|++.|. +.|+.+. .
T Consensus 463 -------~~vi~~~l~~P~GLAvD~~~~~LY~tD~~~~~I~v~~ldG~~~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~ 535 (791)
T 3m0c_C 463 -------DTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGT 535 (791)
T ss_dssp -------EEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSS
T ss_pred -------eEEEecCCCCcceeeeeecCCcEEEEecCCCeEEEEeCCCCeEEEEEeCCCCCcceEEEecCCCCEEEecCCC
Confidence 00001122445678998876555544 55788999998755544444444456789999886 4555443 2
Q ss_pred CCeEEEEEcCCCCCCcccccceeeccccccEEEEEEcCCCCEEEEe-cCCCcEEEEeCCCccccceeeec--cceEEEEE
Q 047325 216 DGTVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSSSRSIVYCG-SSDGLVNFWEREKQLSHGGVLKG--HKLAVLCL 292 (368)
Q Consensus 216 dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~~dg~i~i~d~~~~~~~~~~~~~--~~~~~~~~ 292 (368)
.+.|...++..... .......-.....|++++.+..|+.+ ...+.|..+++...... ..... .-..-..+
T Consensus 536 ~~~I~~~~~dG~~~------~~lv~~~l~~P~GLavD~~~~~LYwaD~~~~~I~~~d~dG~~~~-~v~~~~~~l~~P~gl 608 (791)
T 3m0c_C 536 PAKIKKGGLNGVDI------YSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRK-TILEDEKRLAHPFSL 608 (791)
T ss_dssp SCEEEEEETTSCCE------EEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCE-EEEECTTTTSSEEEE
T ss_pred CCeEEEEecCCCce------EEEEeCCCCCceEEEEecCCCeEEEEeCCCCcEEEEecCCCceE-EEecCCCccCCCCEE
Confidence 37888888864311 11122233568899999766665555 45568999998754332 22221 11122345
Q ss_pred EeCCCEEE-EeeCCCeEEEEecCCC
Q 047325 293 AAAGKLVF-SGSADKTICVWRRDGA 316 (368)
Q Consensus 293 ~~~~~~l~-~~~~dg~i~iw~~~~~ 316 (368)
+..+..|+ +-...+.|...+..++
T Consensus 609 av~~~~lYwtD~~~~~I~~~dk~tG 633 (791)
T 3m0c_C 609 AVFEDKVFWTDIINEAIFSANRLTG 633 (791)
T ss_dssp EEETTEEEEEETTTTEEEEEETTTC
T ss_pred EEeCCEEEEEECCCCEEEEEeCCCC
Confidence 54444444 4445677887775444
No 291
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=97.93 E-value=0.0057 Score=50.08 Aligned_cols=146 Identities=13% Similarity=0.261 Sum_probs=88.0
Q ss_pred CCcEEEEEc--cCCeEEEEeec------CC-CceEEEEe--CCC-C--eEEEEcCCCeEEEEEcCCCCCC-cccccceee
Q 047325 175 DRTFKVWRI--SDSKCLESVSA------HD-DAVNSVVS--SSE-G--LIFTGSADGTVKVWKREQHGKG-TKHSLAQTL 239 (368)
Q Consensus 175 d~~i~iwd~--~~~~~~~~~~~------~~-~~v~~~~~--~~~-~--~l~~~~~dg~i~i~d~~~~~~~-~~~~~~~~~ 239 (368)
+++|.+|++ .+++ +..+.. .. ..+..+++ ++. + ++++...+|.+..|++.....+ ...+.++.+
T Consensus 98 ~n~l~vf~iDp~~~~-l~~i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f 176 (355)
T 3amr_A 98 KNTIEIYAIDGKNGT-LQSMTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAF 176 (355)
T ss_dssp CCEEEEEEECTTTCC-EEECSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEE
T ss_pred CCeEEEEEECCCCCc-eeeccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEe
Confidence 578999976 3433 444421 11 44556666 664 4 6888899999999999643322 223334444
Q ss_pred ccccccEEEEEEcCCCCEEEEecCCCcEEEEeCCC-----ccccceee-ecc---ceEEEEEEe--CCC-EEEEee-CCC
Q 047325 240 LKQECAVTALVVSSSRSIVYCGSSDGLVNFWEREK-----QLSHGGVL-KGH---KLAVLCLAA--AGK-LVFSGS-ADK 306 (368)
Q Consensus 240 ~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~-----~~~~~~~~-~~~---~~~~~~~~~--~~~-~l~~~~-~dg 306 (368)
.. .+.+..+...+....|+.+-++.-|..++.+. .... ... .++ ...-+++-+ +++ +|++++ .++
T Consensus 177 ~l-gsq~EgcvvDd~~g~Lyv~eEd~GIw~~da~p~~~~~~~~v-~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG~~ 254 (355)
T 3amr_A 177 KM-NSQTEGMAADDEYGRLYIAEEDEAIWKFSAEPDGGSNGTVI-DRADGRHLTRDIEGLTIYYAADGKGYLMASSQGNS 254 (355)
T ss_dssp EC-SSCEEEEEEETTTTEEEEEETTTEEEEEECSTTSCSCCEEE-EEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGGGT
T ss_pred cC-CCCcceEEEcCCCCeEEEecccceEEEEeCCcCCCCCceEE-EEecCCccccCcceEEEEecCCCCEEEEEEcCCCC
Confidence 33 45788999999889999999987777777552 1222 111 121 122344543 444 566555 678
Q ss_pred eEEEEecCCCceeeeEee
Q 047325 307 TICVWRRDGAIHTCLSVL 324 (368)
Q Consensus 307 ~i~iw~~~~~~~~~~~~~ 324 (368)
++.+||.... .+.+..+
T Consensus 255 s~~Vydr~~~-~~~vg~f 271 (355)
T 3amr_A 255 SYAIYDRQGK-NKYVADF 271 (355)
T ss_dssp EEEEEESSTT-CCEEEEE
T ss_pred EEEEEECCCC-CcEEEEE
Confidence 9999998622 2444554
No 292
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=97.91 E-value=0.014 Score=54.01 Aligned_cols=180 Identities=13% Similarity=0.042 Sum_probs=103.7
Q ss_pred cCCCEeEEEEcCCCCEEEEE-eCCCcEEEEEccCC----eEEEEeecCCCceEEEEeCCCC--eEEEEcCCCeEEEEEcC
Q 047325 153 HSDAVSCMSLDQDCGLLYTA-SWDRTFKVWRISDS----KCLESVSAHDDAVNSVVSSSEG--LIFTGSADGTVKVWKRE 225 (368)
Q Consensus 153 ~~~~v~~~~~~~~~~~l~~~-~~d~~i~iwd~~~~----~~~~~~~~~~~~v~~~~~~~~~--~l~~~~~dg~i~i~d~~ 225 (368)
....+..+++++....|+.+ ...+.|+.+++... .....+.........|++.+.+ ++++-...+.|.+.++.
T Consensus 422 ~~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P~GLAvD~~~~~LY~tD~~~~~I~v~~ld 501 (791)
T 3m0c_C 422 NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTK 501 (791)
T ss_dssp SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred CCCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEecCCCCcceeeeeecCCcEEEEecCCCeEEEEeCC
Confidence 34567789999865555544 45677888888642 2233333233455677777655 55666678899999987
Q ss_pred CCCCCcccccceeeccccccEEEEEEcCCCCEEEEec-C-CCcEEEEeCCCccccceeeec--cceEEEEEEeCCCEEEE
Q 047325 226 QHGKGTKHSLAQTLLKQECAVTALVVSSSRSIVYCGS-S-DGLVNFWEREKQLSHGGVLKG--HKLAVLCLAAAGKLVFS 301 (368)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~-dg~i~i~d~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~~ 301 (368)
... ........-.....|++.|....|+.+. . .+.|...++...... ..... ....-+++++.+..|+.
T Consensus 502 G~~------~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~~~-~lv~~~l~~P~GLavD~~~~~LYw 574 (791)
T 3m0c_C 502 GVK------RKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIY-SLVTENIQWPNGITLDLLSGRLYW 574 (791)
T ss_dssp SSS------EEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEE-EEECSSCSCEEEEEEETTTTEEEE
T ss_pred CCe------EEEEEeCCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCCCceE-EEEeCCCCCceEEEEecCCCeEEE
Confidence 431 1111222334578999999766555544 2 367888888754332 12221 22334677766666655
Q ss_pred e-eCCCeEEEEecCCCceeeeEeeeccccCeeEEEEecC
Q 047325 302 G-SADKTICVWRRDGAIHTCLSVLTGHTGPVKCLAVEED 339 (368)
Q Consensus 302 ~-~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~l~~~~~ 339 (368)
+ ...+.|...+++......+..-...-....+|++..+
T Consensus 575 aD~~~~~I~~~d~dG~~~~~v~~~~~~l~~P~glav~~~ 613 (791)
T 3m0c_C 575 VDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFED 613 (791)
T ss_dssp EETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEETT
T ss_pred EeCCCCcEEEEecCCCceEEEecCCCccCCCCEEEEeCC
Confidence 5 4567899998876533333221122234557777554
No 293
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A
Probab=97.89 E-value=0.016 Score=53.93 Aligned_cols=257 Identities=12% Similarity=0.176 Sum_probs=142.6
Q ss_pred CCcEEEEEecCC-EEEEccCCCcEEEEcCCccee--c-ccCCCCCeeEEEEe-CCEEEEEeCCCeEEEEeecCCCccccc
Q 047325 44 EGHIYSLAASKD-LLYTGSDSKNIRVWKNLKEFC--G-FKASSGLVKAIVIS-GEKIFTGHQDGKIRVWKISPKNQSVHK 118 (368)
Q Consensus 44 ~~~i~~~~~~~~-~l~s~~~dg~i~iw~~~~~~~--~-~~~~~~~v~~~~~~-~~~l~s~~~dg~i~vw~~~~~~~~~~~ 118 (368)
...|.++..+.+ +|..|..+| +..||-.+... . .......|.++..+ ...|..|+.+| +..||..+.....
T Consensus 21 ~n~V~~I~qD~~G~lWigT~~G-L~ryDG~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigT~~G-l~~yd~~~~~f~~-- 96 (758)
T 3ott_A 21 ASVVSCFLQDSEGLIWIGSNKG-LFSYDGYSTQQHFTYGENNNTRIYCGVIIDNTYLYMGTDNG-ILVYNYRADRYEQ-- 96 (758)
T ss_dssp CCCEEEEEECTTSCEEEEESSC-EEEECSSCEEECSCTTSTTSSCEEEEEEETTTEEEEEETTE-EEEEETTTTEECC--
T ss_pred cceEEEEEECCCCCEEEEECCC-ccccCCCceEEEEccCCCCCceEEEEEEcCCCcEEEEeCCC-eEEEeCCCCEEEC--
Confidence 467999998866 777777888 45567432111 0 11224568888776 66888888766 6788876543211
Q ss_pred cCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcCCCCEEEEEeCCCcEEEEEccCCeEEEEee----c
Q 047325 119 RAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCGLLYTASWDRTFKVWRISDSKCLESVS----A 194 (368)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~----~ 194 (368)
... .....|.++.. .++ .|..++.+ -|..+|..+++...... .
T Consensus 97 ~~~------------------------------~~~~~i~~i~~-~~g-~lWigt~~-Gl~~~~~~~~~~~~~~~~~~~l 143 (758)
T 3ott_A 97 PET------------------------------DFPTDVRTMAL-QGD-TLWLGALN-GLYTYQLQSRKLTSFDTRRNGL 143 (758)
T ss_dssp CSC------------------------------CCCSCEEEEEE-ETT-EEEEEETT-EEEEEETTTCCEEEECHHHHCC
T ss_pred ccc------------------------------CCCceEEEEEe-cCC-cEEEEcCC-cceeEeCCCCeEEEeccCCCCc
Confidence 000 01234666654 344 56667765 58889987665432201 1
Q ss_pred CCCceEEEEeCCCCeEEEEcCCCeEEEEEcCCCCCCcccccceeeccccccEEEEEEcCCCCEEEEecCCCcEEEEeCCC
Q 047325 195 HDDAVNSVVSSSEGLIFTGSADGTVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSSSRSIVYCGSSDGLVNFWEREK 274 (368)
Q Consensus 195 ~~~~v~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~ 274 (368)
....|.++...+++.|..|+.+ .+..++...... ...............|.++...+++..|..|+. +-+..+|..+
T Consensus 144 ~~~~i~~i~~d~~g~lWigt~~-Gl~~~~~~~~~~-~~~~~~~~~~~~~~~i~~i~~d~~~~~lWigt~-~Gl~~~~~~~ 220 (758)
T 3ott_A 144 PNNTIYSIIRTKDNQIYVGTYN-GLCRYIPSNGKF-EGIPLPVHSSQSNLFVNSLLEDTTRQCVWIGTE-GYLFQYFPST 220 (758)
T ss_dssp SCSCEEEEEECTTCCEEEEETT-EEEEEETTTTEE-EEECCCCCTTCSSCCEEEEEEETTTTEEEEEEE-EEEEEEETTT
T ss_pred CCCeEEEEEEcCCCCEEEEeCC-CHhhCccCCCce-EEecCCCccccccceeEEEEEECCCCEEEEEEC-CCCeEEcCCC
Confidence 2356888888888866666654 577888754311 000000000001234888888877776666664 4588888765
Q ss_pred ccccceeeeccceEEEEEEeC-CCEEEEeeCCCeEEEEecCCCceeeeEeee-----ccccCeeEEEEecCCee
Q 047325 275 QLSHGGVLKGHKLAVLCLAAA-GKLVFSGSADKTICVWRRDGAIHTCLSVLT-----GHTGPVKCLAVEEDRDS 342 (368)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~-~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~-----~h~~~v~~l~~~~~~~~ 342 (368)
.... .........+.++..| ...|..|+.+ -+.+++..+.......... -....|.++....+|.+
T Consensus 221 ~~~~-~~~~l~~~~i~~i~~d~~g~lWigT~~-Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~D~~g~l 292 (758)
T 3ott_A 221 GQIK-QTEAFHNNSIKSLALDGNGDLLAGTDN-GLYVYHNDTTPLQHIIHDSRNIQSLTNNIIWNIFADQEHNI 292 (758)
T ss_dssp TEEE-EEEEEEEEEEEEEEECTTCCEEEEETT-EEEEECCTTSCCEEECCCTTCTTSCSCSCEEEEEECTTCCE
T ss_pred CeEE-eccCCCCCeEEEEEEcCCCCEEEEeCC-ceeEEecCCCcEEEEEcCCCCcCcCCcCeEEEEEEcCCCCE
Confidence 4322 1111123446666665 3455556644 5778876554222111100 01235888888777754
No 294
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=97.89 E-value=0.0037 Score=51.19 Aligned_cols=169 Identities=13% Similarity=0.160 Sum_probs=98.8
Q ss_pred CCCEEEEEeCCCcEEEEEccCCeEEEEeecCCCceEEEEeCCC----C----eEEEE-cC--CCeEEEEEcCCCCCCccc
Q 047325 165 DCGLLYTASWDRTFKVWRISDSKCLESVSAHDDAVNSVVSSSE----G----LIFTG-SA--DGTVKVWKREQHGKGTKH 233 (368)
Q Consensus 165 ~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~----~----~l~~~-~~--dg~i~i~d~~~~~~~~~~ 233 (368)
...+++.....+-+.+||+ +|+.++.+.. +.++.+..-|+ + ++++. -. +++|.+|++.....
T Consensus 39 ~~s~ii~t~k~~gL~Vydl-~G~~l~~~~~--g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~---- 111 (355)
T 3amr_A 39 QNSKLITTNKKSGLVVYSL-DGKMLHSYNT--GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNG---- 111 (355)
T ss_dssp GGCEEEEEETTTEEEEEET-TSCEEEEECC--SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTC----
T ss_pred CccEEEEEcCCCCEEEEcC-CCcEEEEccC--CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCC----
Confidence 3456777777889999999 8999988864 45666655442 2 22333 33 57999998742211
Q ss_pred ccceeec-------cccccEEEEEE--cCC-CC-EEEEecCCCcEEEEeCCC-------ccccceeeeccceEEEEEEeC
Q 047325 234 SLAQTLL-------KQECAVTALVV--SSS-RS-IVYCGSSDGLVNFWEREK-------QLSHGGVLKGHKLAVLCLAAA 295 (368)
Q Consensus 234 ~~~~~~~-------~~~~~i~~~~~--~~~-~~-~l~~~~~dg~i~i~d~~~-------~~~~~~~~~~~~~~~~~~~~~ 295 (368)
.+.... .....+..+|+ +|. +. ++++...+|.+..|++.. .+.......+....-+.+.+.
T Consensus 112 -~l~~i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~lgsq~EgcvvDd~ 190 (355)
T 3amr_A 112 -TLQSMTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFKMNSQTEGMAADDE 190 (355)
T ss_dssp -CEEECSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEECSSCEEEEEEETT
T ss_pred -ceeeccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEecCCCCcceEEEcCC
Confidence 111111 11144566777 664 43 688888999999998842 222222223334444555667
Q ss_pred CCEEEEeeCCCeEEEEecCCC---ceeeeEeee-ccc-cCeeEEEEe--cCCe
Q 047325 296 GKLVFSGSADKTICVWRRDGA---IHTCLSVLT-GHT-GPVKCLAVE--EDRD 341 (368)
Q Consensus 296 ~~~l~~~~~dg~i~iw~~~~~---~~~~~~~~~-~h~-~~v~~l~~~--~~~~ 341 (368)
...|+.+-+|.-|..++.+.. ....+..+. ++- ..+..|++- +++.
T Consensus 191 ~g~Lyv~eEd~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~ 243 (355)
T 3amr_A 191 YGRLYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGK 243 (355)
T ss_dssp TTEEEEEETTTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGC
T ss_pred CCeEEEecccceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCC
Confidence 889999999866544443322 224444432 222 368888884 4444
No 295
>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=97.89 E-value=0.0076 Score=50.19 Aligned_cols=229 Identities=10% Similarity=0.085 Sum_probs=113.1
Q ss_pred CeeEEEEe-CCEEEEEeCCCeEEEEeecCCCccccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEE
Q 047325 84 LVKAIVIS-GEKIFTGHQDGKIRVWKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSL 162 (368)
Q Consensus 84 ~v~~~~~~-~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 162 (368)
.-..++|. ...|+.+..+|.|.+++ +++........ ++.........+++
T Consensus 32 ~P~~ia~~pdG~l~V~e~~g~I~~i~--~g~~~~~~~~~---------------------------v~~~g~~~p~gia~ 82 (352)
T 2ism_A 32 VPWALAFLPDGGMLIAERPGRIRLFR--EGRLSTYAELS---------------------------VYHRGESGLLGLAL 82 (352)
T ss_dssp CEEEEEECTTSCEEEEETTTEEEEEE--TTEEEEEEECC---------------------------CCCSTTCSEEEEEE
T ss_pred CceEEEEcCCCeEEEEeCCCeEEEEE--CCCccEeecce---------------------------EeecCCCCceeEEE
Confidence 35677886 33466667789998887 33211000000 00012346788999
Q ss_pred cCC---CCEEEEEeCC------CcEEEEEccCCe-----EE-EEee---cCCCceEEEEeCCCCeEEEEcC---------
Q 047325 163 DQD---CGLLYTASWD------RTFKVWRISDSK-----CL-ESVS---AHDDAVNSVVSSSEGLIFTGSA--------- 215 (368)
Q Consensus 163 ~~~---~~~l~~~~~d------~~i~iwd~~~~~-----~~-~~~~---~~~~~v~~~~~~~~~~l~~~~~--------- 215 (368)
+|+ +..|+++... +.|..++...+. .+ ..+. ........++|.|+|.|+.+..
T Consensus 83 ~pdf~~~g~lYv~~~~~~~~~~~~v~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~G~~~~~~~~~ 162 (352)
T 2ism_A 83 HPRFPQEPYVYAYRTVAEGGLRNQVVRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGMLYVTTGEVYERELAQ 162 (352)
T ss_dssp CTTTTTSCEEEEEEEECTTSSEEEEEEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSCEEEECCCTTCGGGGG
T ss_pred CCCCCCCCEEEEEEecCCCCCccEEEEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCCEEEEECCCCCCcccc
Confidence 998 5555555432 568888876431 11 2233 1112346899999994444432
Q ss_pred -----CCeEEEEEcCCCCCCcc-------cccceeeccccccEEEEEEcC-CCCEEEEecCCCc--------EEEEeCCC
Q 047325 216 -----DGTVKVWKREQHGKGTK-------HSLAQTLLKQECAVTALVVSS-SRSIVYCGSSDGL--------VNFWEREK 274 (368)
Q Consensus 216 -----dg~i~i~d~~~~~~~~~-------~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~--------i~i~d~~~ 274 (368)
.|.|.-++....-.... ........++ .....++|+| ++++.++-...+. |.+.....
T Consensus 163 d~~~~~g~I~ri~~dG~~p~~npf~~~~~~~~~i~a~G~-rnp~g~a~d~~~g~l~v~d~g~~~~~~~~~dei~~i~~G~ 241 (352)
T 2ism_A 163 DLASLGGKILRLTPEGEPAPGNPFLGRRGARPEVYSLGH-RNPQGLAWHPKTGELFSSEHGPSGEQGYGHDEVNLIVPGG 241 (352)
T ss_dssp CTTCSSSEEEEECTTSSBCTTCTTTTCTTSCTTEEEECC-SEECCCEECTTTCCEEEEEECC------CCCEEEEECTTC
T ss_pred CCCCCceEEEEEcCCCCCCCCCcccCCCCCCccEEEEcC-CCcccEEEECCCCCEEEEEcCCCCCCCCCCeEEEEeccCC
Confidence 25666666542100000 0001111122 2356789999 5665554332222 33332111
Q ss_pred c---------------cccceeeeccceEE-EEEEeCCCEEEEeeCCCeEEEEecCCCce----eeeEeeeccccCeeEE
Q 047325 275 Q---------------LSHGGVLKGHKLAV-LCLAAAGKLVFSGSADKTICVWRRDGAIH----TCLSVLTGHTGPVKCL 334 (368)
Q Consensus 275 ~---------------~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~dg~i~iw~~~~~~~----~~~~~~~~h~~~v~~l 334 (368)
. ..+...+..|..+. +++ +++.++++.-..+.|...+++.... .....+..-...+.++
T Consensus 242 nyGwp~~~g~~~~~~~~~p~~~~~~~~ap~G~~~-~~G~l~v~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~rp~~v 320 (352)
T 2ism_A 242 NYGWPRVVGRGNDPRYRDPLYFWPQGFPPGNLAF-FRGDLYVAGLRGQALLRLVLEGERGRWRVLRVETALSGFGRLREV 320 (352)
T ss_dssp BCCTTTCCSCCCCTTSCCCSEECTTCCCEEEEEE-ETTEEEEEETTTTEEEEEEEEEETTEEEEEEEEEEEESSCCEEEE
T ss_pred cCCCCcccCCCCCCCCcCCeEecCCCCCCcceEE-ECCEEEEEECCCCEEEEEEECCCCcceeecchheecccCCCeeEE
Confidence 0 01111222222222 233 5777777766677888887754321 1112222223578999
Q ss_pred EEecCCeee
Q 047325 335 AVEEDRDSS 343 (368)
Q Consensus 335 ~~~~~~~~~ 343 (368)
++.|||.+.
T Consensus 321 ~~~pdG~ly 329 (352)
T 2ism_A 321 QVGPDGALY 329 (352)
T ss_dssp EECTTSCEE
T ss_pred EECCCCcEE
Confidence 999999753
No 296
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=97.86 E-value=0.0042 Score=50.67 Aligned_cols=152 Identities=13% Similarity=0.112 Sum_probs=77.0
Q ss_pred CCCEEEEEeCC-----CcEEEEEccCCeEEEE--eecCCCceEEEEeCCCCeEEEEcCC-----CeEEEEEcCCCCCCcc
Q 047325 165 DCGLLYTASWD-----RTFKVWRISDSKCLES--VSAHDDAVNSVVSSSEGLIFTGSAD-----GTVKVWKREQHGKGTK 232 (368)
Q Consensus 165 ~~~~l~~~~~d-----~~i~iwd~~~~~~~~~--~~~~~~~v~~~~~~~~~~l~~~~~d-----g~i~i~d~~~~~~~~~ 232 (368)
+++.++.|+.+ ..+.+||+.+.+-... +......-.++.+ .+..++.|+.+ ..+.+||+....-
T Consensus 121 ~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~yd~~~~~W--- 196 (308)
T 1zgk_A 121 DGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRRIGVGVAVL-NRLLYAVGGFDGTNRLNSAECYYPERNEW--- 196 (308)
T ss_dssp TTEEEEECCEETTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEEE-TTEEEEECCBCSSCBCCCEEEEETTTTEE---
T ss_pred CCEEEEEcCCCCCcccccEEEECCCCCeEeECCCCCccccceEEEEE-CCEEEEEeCCCCCCcCceEEEEeCCCCeE---
Confidence 45566666533 4688999887653322 2111111122222 23356666554 4588899865421
Q ss_pred cccceeeccccccEEEEEEcCCCCEEEEecCC-----CcEEEEeCCCccccce-eeeccceEEEEEEeCCCEEEEeeCC-
Q 047325 233 HSLAQTLLKQECAVTALVVSSSRSIVYCGSSD-----GLVNFWEREKQLSHGG-VLKGHKLAVLCLAAAGKLVFSGSAD- 305 (368)
Q Consensus 233 ~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d-----g~i~i~d~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~d- 305 (368)
...............+.+ ++++++.|+.+ ..+.+||+.+..-... ..........+...++++++.|+.+
T Consensus 197 -~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~i~v~GG~~~ 273 (308)
T 1zgk_A 197 -RMITAMNTIRSGAGVCVL--HNCIYAAGGYDGQDQLNSVERYDVETETWTFVAPMKHRRSALGITVHQGRIYVLGGYDG 273 (308)
T ss_dssp -EECCCCSSCCBSCEEEEE--TTEEEEECCBCSSSBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEECCBCS
T ss_pred -eeCCCCCCccccceEEEE--CCEEEEEeCCCCCCccceEEEEeCCCCcEEECCCCCCCccceEEEEECCEEEEEcCcCC
Confidence 111111111222222333 56777777654 5689999876432111 1111111112233478888888754
Q ss_pred ----CeEEEEecCCCceeeeEe
Q 047325 306 ----KTICVWRRDGAIHTCLSV 323 (368)
Q Consensus 306 ----g~i~iw~~~~~~~~~~~~ 323 (368)
..+.+||+.+.....+..
T Consensus 274 ~~~~~~v~~yd~~~~~W~~~~~ 295 (308)
T 1zgk_A 274 HTFLDSVECYDPDTDTWSEVTR 295 (308)
T ss_dssp SCBCCEEEEEETTTTEEEEEEE
T ss_pred CcccceEEEEcCCCCEEeecCC
Confidence 457788887776555543
No 297
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=97.85 E-value=0.00026 Score=64.88 Aligned_cols=234 Identities=9% Similarity=0.029 Sum_probs=121.4
Q ss_pred CCcEEEEcCCcc-eecccCCCCCeeEEEEe--CCEEEEEe-CCCeEEEEeecCC----CccccccCCccccceeeeeccC
Q 047325 63 SKNIRVWKNLKE-FCGFKASSGLVKAIVIS--GEKIFTGH-QDGKIRVWKISPK----NQSVHKRAGTLPTLKDIFKSSI 134 (368)
Q Consensus 63 dg~i~iw~~~~~-~~~~~~~~~~v~~~~~~--~~~l~s~~-~dg~i~vw~~~~~----~~~~~~~~~~~~~~~~~~~~~~ 134 (368)
.+.|+..++... ...+......+.+++|+ ++.|+.+. ..+.|+.+++... ........
T Consensus 385 ~~~I~~id~~~~~~~~~~~~~~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~-------------- 450 (699)
T 1n7d_A 385 RHEVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISR-------------- 450 (699)
T ss_dssp TTC-CEECTTSCCEECCSCCCTTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCS--------------
T ss_pred ccceEEEeCCCCcceeeeccCcceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeC--------------
Confidence 356777776543 22222233456677887 45555554 4578888887652 11000000
Q ss_pred CCCceeEecccceeeeeecCCCEeEEEEcCCC-CEEEEEeCCCcEEEEEccCCeEEEEeecCCCceEEEEeCCCC-eEEE
Q 047325 135 KPSNYIEVRRHRTALWIRHSDAVSCMSLDQDC-GLLYTASWDRTFKVWRISDSKCLESVSAHDDAVNSVVSSSEG-LIFT 212 (368)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~ 212 (368)
.......|++.+.+ +++++-...+.|.++++........+.........+++.|.+ .|+.
T Consensus 451 ------------------~~~~P~glavD~~~g~LY~tD~~~~~I~v~d~dg~~~~~l~~~~~~~P~giavDp~~g~ly~ 512 (699)
T 1n7d_A 451 ------------------DIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFREQGSKPRAIVVDPVHGFMYW 512 (699)
T ss_dssp ------------------CC--CCCEECCCSSSBCEECCTTTSCEEEEBSSSCCEEEECCCSSCCCCCEECCSSSSCCEE
T ss_pred ------------------CCCCcceEEEEeeCCcEEEEeccCCeEEEEecCCCceEEEEeCCCCCcceEEEccCCCcEEE
Confidence 11223457777544 444444456789999987554443333333456788898865 5544
Q ss_pred EcC--CCeEEEEEcCCCCCCcccccceeeccccccEEEEEEcCCCC-EEEEecCCCcEEEEeCCCccccceeeec--cce
Q 047325 213 GSA--DGTVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSSSRS-IVYCGSSDGLVNFWEREKQLSHGGVLKG--HKL 287 (368)
Q Consensus 213 ~~~--dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~--~~~ 287 (368)
+.. .+.|..+++..... .......-.....|+++|++. +.++-...+.|..+++...... ..... ...
T Consensus 513 td~~~~~~I~~~~~dG~~~------~~l~~~~l~~PnGlavd~~~~~LY~aD~~~~~I~~~d~dG~~~~-~~~~~~~~~~ 585 (699)
T 1n7d_A 513 TDWGTPAKIKKGGLNGVDI------YSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRK-TILEDEKRLA 585 (699)
T ss_dssp CCCSSSCCEEBCCSSSCCC------CEESCSSCSSCCCEEECTTTCCEEEEETTTTEEEEECSSSSCCE-EECCCSSSCS
T ss_pred cccCCCCeEEEEeCCCCCe------eEEEeCCCCCccEEEEeccCCEEEEEecCCCeEEEEccCCCceE-EEEecCCcCC
Confidence 433 26787777653211 111111223456799998755 4455556678999998743221 11110 001
Q ss_pred EEEEEEeC-CCEEEEeeCCCeEEEEecCCCceeeeEeeeccccCeeEEEEe
Q 047325 288 AVLCLAAA-GKLVFSGSADKTICVWRRDGAIHTCLSVLTGHTGPVKCLAVE 337 (368)
Q Consensus 288 ~~~~~~~~-~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~l~~~ 337 (368)
.-..++.+ +.++++....+.|..++..++ ..+..+.......+.|++.
T Consensus 586 ~P~glavd~~~lywtd~~~~~V~~~d~~~G--~~~~~i~~~~~~P~~i~v~ 634 (699)
T 1n7d_A 586 HPFSLAVFEDKVFWTDIINEAIFSANRLTG--SDVNLLAENLLSPEDMVLF 634 (699)
T ss_dssp SCCCCEEETTEEEEECSTTTCEEEEETTTE--EEEECCCTTCSSCCCCCBC
T ss_pred CceEeEEECCEEEEEeCCCCeEEEEEccCC--CceEEeecCCCCCcEEEEe
Confidence 11223333 345556666788999976554 3444443323334455443
No 298
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=97.81 E-value=0.0057 Score=49.68 Aligned_cols=150 Identities=13% Similarity=0.134 Sum_probs=75.8
Q ss_pred CCCEEEEEeCCC-----cEEEEEccCCeEEEE--eecCCCceEEEEeCCCCeEEEEcC-------CCeEEEEEcCCCCCC
Q 047325 165 DCGLLYTASWDR-----TFKVWRISDSKCLES--VSAHDDAVNSVVSSSEGLIFTGSA-------DGTVKVWKREQHGKG 230 (368)
Q Consensus 165 ~~~~l~~~~~d~-----~i~iwd~~~~~~~~~--~~~~~~~v~~~~~~~~~~l~~~~~-------dg~i~i~d~~~~~~~ 230 (368)
++..++.|+.++ .+.+||+.+.+-... +....... +++...+..++.|+. -..+.+||+.+..-
T Consensus 108 ~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~-~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W- 185 (302)
T 2xn4_A 108 NGLLYAVGGFDGSTGLSSVEAYNIKSNEWFHVAPMNTRRSSV-GVGVVGGLLYAVGGYDVASRQCLSTVECYNATTNEW- 185 (302)
T ss_dssp TTEEEEEEEECSSCEEEEEEEEETTTTEEEEECCCSSCCBSC-EEEEETTEEEEECCEETTTTEECCCEEEEETTTTEE-
T ss_pred CCEEEEEcCCCCCccCceEEEEeCCCCeEeecCCCCCcccCc-eEEEECCEEEEEeCCCCCCCccccEEEEEeCCCCcE-
Confidence 456677776553 577888877653322 21111111 222222235555554 24588899875421
Q ss_pred cccccceeeccccccEEEEEEcCCCCEEEEecCC-----CcEEEEeCCCccccce-eeeccceEEEEEEeCCCEEEEeeC
Q 047325 231 TKHSLAQTLLKQECAVTALVVSSSRSIVYCGSSD-----GLVNFWEREKQLSHGG-VLKGHKLAVLCLAAAGKLVFSGSA 304 (368)
Q Consensus 231 ~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d-----g~i~i~d~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~ 304 (368)
...............+.+ ++++++.|+.+ ..+.+||+++..-... ..........+...++++++.|+.
T Consensus 186 ---~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~~~~i~v~GG~ 260 (302)
T 2xn4_A 186 ---TYIAEMSTRRSGAGVGVL--NNLLYAVGGHDGPLVRKSVEVYDPTTNAWRQVADMNMCRRNAGVCAVNGLLYVVGGD 260 (302)
T ss_dssp ---EEECCCSSCCBSCEEEEE--TTEEEEECCBSSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEECCB
T ss_pred ---EECCCCccccccccEEEE--CCEEEEECCCCCCcccceEEEEeCCCCCEeeCCCCCCccccCeEEEECCEEEEECCc
Confidence 111111111112222222 56777777754 3688999876432111 011111111233457888888886
Q ss_pred CC-----eEEEEecCCCceeee
Q 047325 305 DK-----TICVWRRDGAIHTCL 321 (368)
Q Consensus 305 dg-----~i~iw~~~~~~~~~~ 321 (368)
++ .+.+||+.+.....+
T Consensus 261 ~~~~~~~~v~~yd~~~~~W~~~ 282 (302)
T 2xn4_A 261 DGSCNLASVEYYNPTTDKWTVV 282 (302)
T ss_dssp CSSSBCCCEEEEETTTTEEEEC
T ss_pred CCCcccccEEEEcCCCCeEEEC
Confidence 54 488898887655443
No 299
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=97.68 E-value=0.00039 Score=63.67 Aligned_cols=180 Identities=16% Similarity=0.067 Sum_probs=97.4
Q ss_pred CCEeEEEEcCCCCEEEEEe-CCCcEEEEEccC----CeEEEEeecCCCceEEEEeCCC-C-eEEEEcCCCeEEEEEcCCC
Q 047325 155 DAVSCMSLDQDCGLLYTAS-WDRTFKVWRISD----SKCLESVSAHDDAVNSVVSSSE-G-LIFTGSADGTVKVWKREQH 227 (368)
Q Consensus 155 ~~v~~~~~~~~~~~l~~~~-~d~~i~iwd~~~----~~~~~~~~~~~~~v~~~~~~~~-~-~l~~~~~dg~i~i~d~~~~ 227 (368)
..+..++|++.+..|+.+. ..+.|+.+++.. ......+.........+++.+. + ++++-...+.|.++++...
T Consensus 406 ~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~glavD~~~g~LY~tD~~~~~I~v~d~dg~ 485 (699)
T 1n7d_A 406 RNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGV 485 (699)
T ss_dssp TTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC--CCCEECCCSSSBCEECCTTTSCEEEEBSSSC
T ss_pred cceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeCCCCCcceEEEEeeCCcEEEEeccCCeEEEEecCCC
Confidence 3456789998766666654 457899999875 2222222212223456777743 3 4455556788999998643
Q ss_pred CCCcccccceeeccccccEEEEEEcCCCCEEEEec-C-CCcEEEEeCCCcccccee-eeccceEEEEEEeCCC-EEEEee
Q 047325 228 GKGTKHSLAQTLLKQECAVTALVVSSSRSIVYCGS-S-DGLVNFWEREKQLSHGGV-LKGHKLAVLCLAAAGK-LVFSGS 303 (368)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~-dg~i~i~d~~~~~~~~~~-~~~~~~~~~~~~~~~~-~l~~~~ 303 (368)
.. .............++++|.+..|+.+. . .+.|..+++......... .......-+++++++. ++++-.
T Consensus 486 ~~------~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~~~~l~~~~l~~PnGlavd~~~~~LY~aD~ 559 (699)
T 1n7d_A 486 KR------KTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDS 559 (699)
T ss_dssp CE------EEECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCCCCEESCSSCSSCCCEEECTTTCCEEEEET
T ss_pred ce------EEEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCCeeEEEeCCCCCccEEEEeccCCEEEEEec
Confidence 11 111111223456788998655555443 2 267888877643221111 0111222367777655 445555
Q ss_pred CCCeEEEEecCCCceeeeEeeeccccCeeEEEEecCC
Q 047325 304 ADKTICVWRRDGAIHTCLSVLTGHTGPVKCLAVEEDR 340 (368)
Q Consensus 304 ~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~l~~~~~~ 340 (368)
..+.|.+++++......+............|++..++
T Consensus 560 ~~~~I~~~d~dG~~~~~~~~~~~~~~~P~glavd~~~ 596 (699)
T 1n7d_A 560 KLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFEDK 596 (699)
T ss_dssp TTTEEEEECSSSSCCEEECCCSSSCSSCCCCEEETTE
T ss_pred CCCeEEEEccCCCceEEEEecCCcCCCceEeEEECCE
Confidence 6788999998764333332221222334566666653
No 300
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=97.57 E-value=0.023 Score=46.52 Aligned_cols=194 Identities=11% Similarity=0.067 Sum_probs=113.6
Q ss_pred cEEEEEecC---CEEEEccCCCcEEEEcCCcce---ecccCCCCCeeEEEEe--CCEE-EEEeCCCeEEEEeecCCCccc
Q 047325 46 HIYSLAASK---DLLYTGSDSKNIRVWKNLKEF---CGFKASSGLVKAIVIS--GEKI-FTGHQDGKIRVWKISPKNQSV 116 (368)
Q Consensus 46 ~i~~~~~~~---~~l~s~~~dg~i~iw~~~~~~---~~~~~~~~~v~~~~~~--~~~l-~s~~~dg~i~vw~~~~~~~~~ 116 (368)
.+.+++|+. .++++-...+.|..++..... ......-.....++++ +..| ++-...+.|.+.+++......
T Consensus 36 ~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~~~l~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~ 115 (318)
T 3sov_A 36 DAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRKV 115 (318)
T ss_dssp EEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEEEEECCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEE
T ss_pred ccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEEEcCCCCCccEEEEEcCCCeEEEEECCCCEEEEEECCCCcEEE
Confidence 456778863 366666677888888876431 1122222345567776 4444 444556788888876543211
Q ss_pred cccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcCCCCEEEEEeC--CCcEEEEEccCCeEEEEeec
Q 047325 117 HKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCGLLYTASW--DRTFKVWRISDSKCLESVSA 194 (368)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~--d~~i~iwd~~~~~~~~~~~~ 194 (368)
... ........+++.|.+..|+.+.. .+.|...++........+..
T Consensus 116 l~~--------------------------------~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~ 163 (318)
T 3sov_A 116 LFW--------------------------------QELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIIINS 163 (318)
T ss_dssp EEC--------------------------------SSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTSCSCEEEECS
T ss_pred EEe--------------------------------CCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCCCCeEEEEEC
Confidence 100 12345678999987666666653 57788888753322222222
Q ss_pred CCCceEEEEeCCCC--eEEEEcCCCeEEEEEcCCCCCCcccccceeeccccccEEEEEEcCCCCEEEEecCCCcEEEEeC
Q 047325 195 HDDAVNSVVSSSEG--LIFTGSADGTVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSSSRSIVYCGSSDGLVNFWER 272 (368)
Q Consensus 195 ~~~~v~~~~~~~~~--~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~ 272 (368)
.-...+.+++++++ +.++=+..+.|..+|+..... .............+++.. +.++++-...+.|..++.
T Consensus 164 ~l~~Pnglavd~~~~~lY~aD~~~~~I~~~d~dG~~~------~~~~~~~~~~P~glav~~-~~lywtd~~~~~V~~~~~ 236 (318)
T 3sov_A 164 EIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNR------QAVVKGSLPHPFALTLFE-DILYWTDWSTHSILACNK 236 (318)
T ss_dssp SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC------EEEECSCCSCEEEEEEET-TEEEEEETTTTEEEEEET
T ss_pred CCCCccEEEEeccCCEEEEEECCCCEEEEEcCCCCce------EEEecCCCCCceEEEEeC-CEEEEEecCCCeEEEEEC
Confidence 33456889999855 444555678999999874321 111112233456677653 456666667788999998
Q ss_pred CCcccc
Q 047325 273 EKQLSH 278 (368)
Q Consensus 273 ~~~~~~ 278 (368)
.++...
T Consensus 237 ~~G~~~ 242 (318)
T 3sov_A 237 YTGEGL 242 (318)
T ss_dssp TTCCSC
T ss_pred CCCCce
Confidence 665443
No 301
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=97.56 E-value=0.014 Score=47.32 Aligned_cols=152 Identities=9% Similarity=0.116 Sum_probs=79.1
Q ss_pred CCCEEEEEeCC-----CcEEEEEccCCe-----EEEEeecCCCceEEEEeCCCC-eEEEEcCC-----CeEEEEEcCCCC
Q 047325 165 DCGLLYTASWD-----RTFKVWRISDSK-----CLESVSAHDDAVNSVVSSSEG-LIFTGSAD-----GTVKVWKREQHG 228 (368)
Q Consensus 165 ~~~~l~~~~~d-----~~i~iwd~~~~~-----~~~~~~~~~~~v~~~~~~~~~-~l~~~~~d-----g~i~i~d~~~~~ 228 (368)
++..++.|+.+ ..+.+||+.+.+ .+..+.........+.. ++ .++.|+.+ ..+.+||+....
T Consensus 62 ~~~l~v~GG~~~~~~~~~~~~~d~~~~~~~~W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~d~~~~~ 139 (301)
T 2vpj_A 62 HDRIYVIGGYDGRSRLSSVECLDYTADEDGVWYSVAPMNVRRGLAGATTL--GDMIYVSGGFDGSRRHTSMERYDPNIDQ 139 (301)
T ss_dssp TTEEEEECCBCSSCBCCCEEEEETTCCTTCCCEEECCCSSCCBSCEEEEE--TTEEEEECCBCSSCBCCEEEEEETTTTE
T ss_pred CCEEEEEcCCCCCccCceEEEEECCCCCCCeeEECCCCCCCccceeEEEE--CCEEEEEcccCCCcccceEEEEcCCCCe
Confidence 45666777654 468999987755 22222222222222222 44 55666543 368888886542
Q ss_pred CCcccccceeeccccccEEEEEEcCCCCEEEEecCC-----CcEEEEeCCCccccce-eeeccceEEEEEEeCCCEEEEe
Q 047325 229 KGTKHSLAQTLLKQECAVTALVVSSSRSIVYCGSSD-----GLVNFWEREKQLSHGG-VLKGHKLAVLCLAAAGKLVFSG 302 (368)
Q Consensus 229 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d-----g~i~i~d~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~ 302 (368)
................+.+ ++++++.|+.+ ..+.+||+.+..-... ..........+...++++++.|
T Consensus 140 ----W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~i~v~G 213 (301)
T 2vpj_A 140 ----WSMLGDMQTAREGAGLVVA--SGVIYCLGGYDGLNILNSVEKYDPHTGHWTNVTPMATKRSGAGVALLNDHIYVVG 213 (301)
T ss_dssp ----EEEEEECSSCCBSCEEEEE--TTEEEEECCBCSSCBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEEC
T ss_pred ----EEECCCCCCCcccceEEEE--CCEEEEECCCCCCcccceEEEEeCCCCcEEeCCCCCcccccceEEEECCEEEEEe
Confidence 1111111111122222222 56777777654 4588999876432211 1111111112334578888888
Q ss_pred eCC-----CeEEEEecCCCceeeeEee
Q 047325 303 SAD-----KTICVWRRDGAIHTCLSVL 324 (368)
Q Consensus 303 ~~d-----g~i~iw~~~~~~~~~~~~~ 324 (368)
+.+ ..+.+||+.+.....+..+
T Consensus 214 G~~~~~~~~~v~~yd~~~~~W~~~~~~ 240 (301)
T 2vpj_A 214 GFDGTAHLSSVEAYNIRTDSWTTVTSM 240 (301)
T ss_dssp CBCSSSBCCCEEEEETTTTEEEEECCC
T ss_pred CCCCCcccceEEEEeCCCCcEEECCCC
Confidence 764 4689999988766655443
No 302
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=97.55 E-value=0.035 Score=48.15 Aligned_cols=197 Identities=9% Similarity=0.032 Sum_probs=108.0
Q ss_pred CCEeEEEE-------cCCCCEEEEEeCCC-------cEEEEEccC-CeEE-----EEeecCCCceEEEEeCCC-C-eEEE
Q 047325 155 DAVSCMSL-------DQDCGLLYTASWDR-------TFKVWRISD-SKCL-----ESVSAHDDAVNSVVSSSE-G-LIFT 212 (368)
Q Consensus 155 ~~v~~~~~-------~~~~~~l~~~~~d~-------~i~iwd~~~-~~~~-----~~~~~~~~~v~~~~~~~~-~-~l~~ 212 (368)
.....++| +++++.|+++...+ .|.+++... +... ..+... .....++.+|+ + ++++
T Consensus 186 ~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~~~~~~V~~i~r~~~G~~~~~~~~~~v~~~-~~p~giavdp~~g~LYvt 264 (496)
T 3kya_A 186 NRIRSIAFNKKIEGYADEAEYMIVAIDYDGKGDESPSVYIIKRNADGTFDDRSDIQLIAAY-KQCNGATIHPINGELYFN 264 (496)
T ss_dssp SBEEEEEECCCBTTTBCTTCEEEEEECCCTTGGGEEEEEEEECCTTSCCSTTSCEEEEEEE-SCCCCEEECTTTCCEEEE
T ss_pred CCCcEEEEeecccccCCCCCEEEEEeCCCCCcccCceEEEEecCCCCceeecccceeeccC-CCceEEEEcCCCCeEEEE
Confidence 35788999 99999777776554 266665333 2221 122211 23456788884 4 5666
Q ss_pred EcCCCeEEEEEcC-------CCCCCcc--------cccceeeccccccEEEEEEcCCCCEEE-EecCCCcEEEEeCCC--
Q 047325 213 GSADGTVKVWKRE-------QHGKGTK--------HSLAQTLLKQECAVTALVVSSSRSIVY-CGSSDGLVNFWEREK-- 274 (368)
Q Consensus 213 ~~~dg~i~i~d~~-------~~~~~~~--------~~~~~~~~~~~~~i~~~~~~~~~~~l~-~~~~dg~i~i~d~~~-- 274 (368)
-..++.|..+|+. ....... ...+.. .........++|+|+++.|+ +-.....|+.++...
T Consensus 265 d~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~g~~~~l~~-~~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~dg~~ 343 (496)
T 3kya_A 265 SYEKGQVFRLDLVDYFKTIKNGGSWDPIVKNNPNTFKQLFT-IADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDYDEIK 343 (496)
T ss_dssp ETTTTEEEEECHHHHHHHHHTTCCCCCBGGGCTTTEEEEEE-CSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEETTT
T ss_pred ECCCCEEEEEecccccccccCceeecccccccccccceeEe-cCCCCCceEEEEcCCCCEEEEEeCCCCEEEEEecCCCc
Confidence 6778899999987 3321000 001111 12234467899999999544 445667888866542
Q ss_pred cccc-ceeeec------------------cceEEEEEE-------eCCCEEEEeeCCCeEEEEecCCCceeeeEeeecc-
Q 047325 275 QLSH-GGVLKG------------------HKLAVLCLA-------AAGKLVFSGSADKTICVWRRDGAIHTCLSVLTGH- 327 (368)
Q Consensus 275 ~~~~-~~~~~~------------------~~~~~~~~~-------~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h- 327 (368)
.... ...+.+ ++....++. .++.++++=..+.+|+.++.+. .+.++.+.
T Consensus 344 ~~~~~~~~~aG~~g~~G~~DG~~~~a~f~~P~~gv~vd~~~~~~~~~g~lyVaD~~N~rIr~i~~~G----~v~TiaG~g 419 (496)
T 3kya_A 344 KEFITPYNFVGGYKQSGYRDDVGTEARMNNPCQGVFVKNPDYTGEEEYDFYFVDRLNFCVRKVTPEG----IVSTYAGRG 419 (496)
T ss_dssp TEECCCEEEEEBTTBCCCBCCBGGGCBCSSEEEEEEEECTTCCSSCCEEEEEEEGGGTEEEEECTTC----BEEEEEESC
T ss_pred ceecccEEecCCCCCCcccCCcccccccCCCeEEEEEccccccccCCCeEEEEECCCCEEEEEeCCC----CEEEEeccc
Confidence 2110 011111 111134444 4456666666788899997432 12222211
Q ss_pred -----------------------ccCeeEEEEecC-CeeeecCCcceEEEEEee
Q 047325 328 -----------------------TGPVKCLAVEED-RDSSSSTSSCAQRWIVYS 357 (368)
Q Consensus 328 -----------------------~~~v~~l~~~~~-~~~~~~~~~~~~~w~l~s 357 (368)
-.....|+++++ +.+..+-....++..+..
T Consensus 420 ~~~~~~~~~~~G~~dG~~~~~a~f~~P~gIavd~~~g~lyVaD~~N~rIrki~~ 473 (496)
T 3kya_A 420 ASTSLADGNQWGTDDGDLREVARFRDVSGLVYDDVKEMFYVHDQVGHTIRTISM 473 (496)
T ss_dssp TTHHHHHSCSCCCCCEETTTTCCCSSEEEEEEETTTTEEEEEETTTTEEEEEEE
T ss_pred ccccccCccccccCCCCchhhhhcCCCcEEEEECCCCEEEEEeCCCCEEEEEEC
Confidence 123678999997 776555555555555543
No 303
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=97.50 E-value=0.052 Score=49.02 Aligned_cols=176 Identities=13% Similarity=0.037 Sum_probs=105.6
Q ss_pred CCEeEEEEcCCCCEEEEE-eCCCcEEEEEccCCeEEEEeecCCCceEEEEeCCCC--eEEEEcCCCeEEEEEcCCCCCCc
Q 047325 155 DAVSCMSLDQDCGLLYTA-SWDRTFKVWRISDSKCLESVSAHDDAVNSVVSSSEG--LIFTGSADGTVKVWKREQHGKGT 231 (368)
Q Consensus 155 ~~v~~~~~~~~~~~l~~~-~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~--~l~~~~~dg~i~i~d~~~~~~~~ 231 (368)
..+..++|++.+..|+.+ ..++.|..+++........+.........+++.+.+ ++++-...+.|.+.++.....
T Consensus 37 ~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~~~~v~~~g~~~P~GlAvD~~~~~LY~tD~~~~~I~v~~~dG~~~-- 114 (628)
T 4a0p_A 37 KEASALDFDVTDNRIYWTDISLKTISRAFMNGSALEHVVEFGLDYPEGMAVDWLGKNLYWADTGTNRIEVSKLDGQHR-- 114 (628)
T ss_dssp SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSTTC--
T ss_pred CceEEEEEECCCCEEEEEECCCCeEEEEECCCCCcEEEEeCCCCCcceEEEEeCCCEEEEEECCCCEEEEEecCCCcE--
Confidence 457789999976666555 456889999886544333333333445677776543 556666678999999864321
Q ss_pred ccccceeeccccccEEEEEEcCCCCEEEEec--CCCcEEEEeCCCccccceeeeccceEEEEEEeCCCEEEEe-eCCCeE
Q 047325 232 KHSLAQTLLKQECAVTALVVSSSRSIVYCGS--SDGLVNFWEREKQLSHGGVLKGHKLAVLCLAAAGKLVFSG-SADKTI 308 (368)
Q Consensus 232 ~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~--~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~dg~i 308 (368)
.......-.....+++.|....|+... ..+.|...++................-++++++++.|+.+ ...+.|
T Consensus 115 ----~~l~~~~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~dG~~~~~l~~~~~~P~GlalD~~~~~LY~aD~~~~~I 190 (628)
T 4a0p_A 115 ----QVLVWKDLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMDGSERTTLVPNVGRANGLTIDYAKRRLYWTDLDTNLI 190 (628)
T ss_dssp ----EEEECSSCCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECSCSSEEEEEEETTTTEEEEEETTTTEE
T ss_pred ----EEEEeCCCCCcccEEEccCCCeEEEeCCCCCCEEEEEeCCCCceEEEECCCCCcceEEEccccCEEEEEECCCCEE
Confidence 111112334578999998655555544 3567888887754332111111223346777766666555 456789
Q ss_pred EEEecCCCceeeeEeeeccccCeeEEEEecC
Q 047325 309 CVWRRDGAIHTCLSVLTGHTGPVKCLAVEED 339 (368)
Q Consensus 309 ~iw~~~~~~~~~~~~~~~h~~~v~~l~~~~~ 339 (368)
...+++....+. +........+|++..+
T Consensus 191 ~~~d~dG~~~~v---~~~~l~~P~glav~~~ 218 (628)
T 4a0p_A 191 ESSNMLGLNREV---IADDLPHPFGLTQYQD 218 (628)
T ss_dssp EEEETTSCSCEE---EEECCSCEEEEEEETT
T ss_pred EEEcCCCCceEE---eeccCCCceEEEEECC
Confidence 999987653332 2233344567888764
No 304
>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A
Probab=97.45 E-value=0.02 Score=48.01 Aligned_cols=113 Identities=14% Similarity=0.104 Sum_probs=78.2
Q ss_pred CEeEEEEcCCCCEEEEEeCCCcEEEEEccCCe------------EEEEeec------CCCceEEEEeCCCC----eEEEE
Q 047325 156 AVSCMSLDQDCGLLYTASWDRTFKVWRISDSK------------CLESVSA------HDDAVNSVVSSSEG----LIFTG 213 (368)
Q Consensus 156 ~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~------------~~~~~~~------~~~~v~~~~~~~~~----~l~~~ 213 (368)
.|..+..+|+|++|+..+. ..|.|..+..+. ..+.+.- ...+|..+.|+|-+ .|++-
T Consensus 67 ~i~qlvlSpsG~lLAl~g~-~~V~Vv~LP~~~~~~~~~~~~~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVL 145 (452)
T 3pbp_A 67 DTFHVISSTSGDLLCLFND-NEIFVMEVPWGYSNVEDVSIQDAFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVL 145 (452)
T ss_dssp TTCEEEECTTSSEEEEECS-SEEEEEECCTTCSCCCCHHHHHTTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEE
T ss_pred ceeEEEECCCCCEEEEecC-CeEEEEEecCccccCcccccccccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEE
Confidence 5677999999999998875 689999887331 1122321 24679999999976 89999
Q ss_pred cCCCeEEEEEcCCCCCCcccccce-----eeccccccEEEEEEcCCCCEEEE--ecCCCcEEEE
Q 047325 214 SADGTVKVWKREQHGKGTKHSLAQ-----TLLKQECAVTALVVSSSRSIVYC--GSSDGLVNFW 270 (368)
Q Consensus 214 ~~dg~i~i~d~~~~~~~~~~~~~~-----~~~~~~~~i~~~~~~~~~~~l~~--~~~dg~i~i~ 270 (368)
..|+.|++||+........ ...+ ........|.+++|.+++-.|.. .+.+|.|+-.
T Consensus 146 tsD~~Ir~yDl~~s~~~P~-~L~k~~~~fg~d~~~~ev~S~~Fg~~~lTLYvl~~t~~GDIYAl 208 (452)
T 3pbp_A 146 KEDDTITMFDILNSQEKPI-VLNKPNNSFGLDARVNDITDLEFSKDGLTLYCLNTTEGGDIFAF 208 (452)
T ss_dssp ETTSCEEEEETTCTTSCCE-EESCCCSEEESCSSCCCEEEEEECTTSSCEEEEECTTSCEEEEE
T ss_pred ecCCEEEEEEcccCCCCCc-chhccccccCCCcccceEEEEEEcCCCcEEEEEecCCCCCEEEE
Confidence 9999999999986322111 0000 11112256889999998877776 4488888754
No 305
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=97.43 E-value=0.025 Score=45.92 Aligned_cols=152 Identities=10% Similarity=0.150 Sum_probs=78.1
Q ss_pred CCCEEEEEeCC----CcEEEEEccCCeEEE--EeecCCCceEEEEeCCCC-eEEEEcCC------CeEEEEEcCCCCCCc
Q 047325 165 DCGLLYTASWD----RTFKVWRISDSKCLE--SVSAHDDAVNSVVSSSEG-LIFTGSAD------GTVKVWKREQHGKGT 231 (368)
Q Consensus 165 ~~~~l~~~~~d----~~i~iwd~~~~~~~~--~~~~~~~~v~~~~~~~~~-~l~~~~~d------g~i~i~d~~~~~~~~ 231 (368)
++..++.|+.+ ..+.+||+.+.+-.. .+.........+.. ++ .++.|+.+ ..+.+||+....-
T Consensus 55 ~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W-- 130 (306)
T 3ii7_A 55 DNVVYILGGSQLFPIKRMDCYNVVKDSWYSKLGPPTPRDSLAACAA--EGKIYTSGGSEVGNSALYLFECYDTRTESW-- 130 (306)
T ss_dssp TTEEEEECCBSSSBCCEEEEEETTTTEEEEEECCSSCCBSCEEEEE--TTEEEEECCBBTTBSCCCCEEEEETTTTEE--
T ss_pred CCEEEEEeCCCCCCcceEEEEeCCCCeEEECCCCCccccceeEEEE--CCEEEEECCCCCCCcEeeeEEEEeCCCCce--
Confidence 45566777654 578899988775332 22211112222222 44 66666654 4688899875421
Q ss_pred ccccceeeccccccEEEEEEcCCCCEEEEecC---------CCcEEEEeCCCccccce-eeeccceEEEEEEeCCCEEEE
Q 047325 232 KHSLAQTLLKQECAVTALVVSSSRSIVYCGSS---------DGLVNFWEREKQLSHGG-VLKGHKLAVLCLAAAGKLVFS 301 (368)
Q Consensus 232 ~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~---------dg~i~i~d~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~ 301 (368)
...............+.+ ++++++.|+. -..+.+||+.+..-... ..........+...++++++.
T Consensus 131 --~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~i~v~ 206 (306)
T 3ii7_A 131 --HTKPSMLTQRCSHGMVEA--NGLIYVCGGSLGNNVSGRVLNSCEVYDPATETWTELCPMIEARKNHGLVFVKDKIFAV 206 (306)
T ss_dssp --EEECCCSSCCBSCEEEEE--TTEEEEECCEESCTTTCEECCCEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEE
T ss_pred --EeCCCCcCCcceeEEEEE--CCEEEEECCCCCCCCcccccceEEEeCCCCCeEEECCCccchhhcceEEEECCEEEEE
Confidence 111111111111222222 5666676653 34588999876532111 111111111223347788888
Q ss_pred eeCC-----CeEEEEecCCCceeeeEee
Q 047325 302 GSAD-----KTICVWRRDGAIHTCLSVL 324 (368)
Q Consensus 302 ~~~d-----g~i~iw~~~~~~~~~~~~~ 324 (368)
|+.+ ..+.+||+.+.....+..+
T Consensus 207 GG~~~~~~~~~~~~yd~~~~~W~~~~~~ 234 (306)
T 3ii7_A 207 GGQNGLGGLDNVEYYDIKLNEWKMVSPM 234 (306)
T ss_dssp CCEETTEEBCCEEEEETTTTEEEECCCC
T ss_pred eCCCCCCCCceEEEeeCCCCcEEECCCC
Confidence 8754 4588999888766655444
No 306
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=97.43 E-value=0.036 Score=48.05 Aligned_cols=159 Identities=11% Similarity=0.118 Sum_probs=93.7
Q ss_pred CEeEEEEcC-CCCEEEEEe-CCCcEEEEEccCCeEEEEeecC---CCceEEEEe-------CCCC-eEEEEcCCC-----
Q 047325 156 AVSCMSLDQ-DCGLLYTAS-WDRTFKVWRISDSKCLESVSAH---DDAVNSVVS-------SSEG-LIFTGSADG----- 217 (368)
Q Consensus 156 ~v~~~~~~~-~~~~l~~~~-~d~~i~iwd~~~~~~~~~~~~~---~~~v~~~~~-------~~~~-~l~~~~~dg----- 217 (368)
....|+++| +...|+.+. ..+.|++.|+.++.....+... ......++| ++++ .|+++...+
T Consensus 140 ~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~~~ 219 (496)
T 3kya_A 140 DNGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPLNINTIPTNRIRSIAFNKKIEGYADEAEYMIVAIDYDGKGDE 219 (496)
T ss_dssp SEEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEEEEECCTTSSCSBEEEEEECCCBTTTBCTTCEEEEEECCCTTGGG
T ss_pred CCCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEEEEEccCccccCCCcEEEEeecccccCCCCCEEEEEeCCCCCccc
Confidence 467899998 344555554 4467999999887766555432 235789999 9888 566665543
Q ss_pred --eEEEEEcCCCCCCcccccceeeccccccEEEEEEcC-CCCEEEEecCCCcEEEEeCC-------Cccc----------
Q 047325 218 --TVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSS-SRSIVYCGSSDGLVNFWERE-------KQLS---------- 277 (368)
Q Consensus 218 --~i~i~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~i~d~~-------~~~~---------- 277 (368)
.|.+++....+..........+.. -.....++++| ++.++++-..++.|..+|+. ++..
T Consensus 220 ~~~V~~i~r~~~G~~~~~~~~~~v~~-~~~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~g 298 (496)
T 3kya_A 220 SPSVYIIKRNADGTFDDRSDIQLIAA-YKQCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKNNPN 298 (496)
T ss_dssp EEEEEEEECCTTSCCSTTSCEEEEEE-ESCCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGGGCTT
T ss_pred CceEEEEecCCCCceeecccceeecc-CCCceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCceeeccccccccc
Confidence 366666433111110000011111 12345678899 55566667788889999987 3332
Q ss_pred -cceeee---ccceEEEEEEeCCCEEEEe-eCCCeEEEEecCC
Q 047325 278 -HGGVLK---GHKLAVLCLAAAGKLVFSG-SADKTICVWRRDG 315 (368)
Q Consensus 278 -~~~~~~---~~~~~~~~~~~~~~~l~~~-~~dg~i~iw~~~~ 315 (368)
...... .....-++++|++++|+.+ .....|+.++.+.
T Consensus 299 ~~~~l~~~~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~dg 341 (496)
T 3kya_A 299 TFKQLFTIADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDYDE 341 (496)
T ss_dssp TEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEET
T ss_pred ccceeEecCCCCCceEEEEcCCCCEEEEEeCCCCEEEEEecCC
Confidence 001111 1223457888999965544 5677898877654
No 307
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=97.42 E-value=0.015 Score=47.32 Aligned_cols=152 Identities=13% Similarity=0.148 Sum_probs=76.9
Q ss_pred CCCEEEEEeC----C-----CcEEEEEccCCeEEEE--eecCCCceEEEEeCCCC-eEEEEcCC-----CeEEEEEcCCC
Q 047325 165 DCGLLYTASW----D-----RTFKVWRISDSKCLES--VSAHDDAVNSVVSSSEG-LIFTGSAD-----GTVKVWKREQH 227 (368)
Q Consensus 165 ~~~~l~~~~~----d-----~~i~iwd~~~~~~~~~--~~~~~~~v~~~~~~~~~-~l~~~~~d-----g~i~i~d~~~~ 227 (368)
++.+++.|+. + ..+.+||+.+.+-... +.........+.+ ++ .++.|+.+ ..+.+||+.+.
T Consensus 70 ~~~lyv~GG~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~ 147 (308)
T 1zgk_A 70 GGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWSPCAPMSVPRNRIGVGVI--DGHIYAVGGSHGCIHHNSVERYEPERD 147 (308)
T ss_dssp TTEEEEECCEEEETTEEEECCCEEEEETTTTEEEECCCCSSCCBTCEEEEE--TTEEEEECCEETTEECCCEEEEETTTT
T ss_pred CCEEEEECCCcCCCCCCeecceEEEECCCCCeEeECCCCCcCccccEEEEE--CCEEEEEcCCCCCcccccEEEECCCCC
Confidence 4555666554 2 4688899887653222 2111112222222 44 55565543 46888888754
Q ss_pred CCCcccccceeeccccccEEEEEEcCCCCEEEEecCC-----CcEEEEeCCCccccce-eeeccceEEEEEEeCCCEEEE
Q 047325 228 GKGTKHSLAQTLLKQECAVTALVVSSSRSIVYCGSSD-----GLVNFWEREKQLSHGG-VLKGHKLAVLCLAAAGKLVFS 301 (368)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d-----g~i~i~d~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~ 301 (368)
.- ...............+.+ ++++++.|+.+ ..+.+||+.+..-... ..........+...++++++.
T Consensus 148 ~W----~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~ 221 (308)
T 1zgk_A 148 EW----HLVAPMLTRRIGVGVAVL--NRLLYAVGGFDGTNRLNSAECYYPERNEWRMITAMNTIRSGAGVCVLHNCIYAA 221 (308)
T ss_dssp EE----EECCCCSSCCBSCEEEEE--TTEEEEECCBCSSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEE
T ss_pred eE----eECCCCCccccceEEEEE--CCEEEEEeCCCCCCcCceEEEEeCCCCeEeeCCCCCCccccceEEEECCEEEEE
Confidence 21 111111111122222223 56777777654 4588999875432110 111111111233347888888
Q ss_pred eeCC-----CeEEEEecCCCceeeeEee
Q 047325 302 GSAD-----KTICVWRRDGAIHTCLSVL 324 (368)
Q Consensus 302 ~~~d-----g~i~iw~~~~~~~~~~~~~ 324 (368)
|+.+ ..+.+||+.+.....+..+
T Consensus 222 GG~~~~~~~~~v~~yd~~~~~W~~~~~~ 249 (308)
T 1zgk_A 222 GGYDGQDQLNSVERYDVETETWTFVAPM 249 (308)
T ss_dssp CCBCSSSBCCCEEEEETTTTEEEECCCC
T ss_pred eCCCCCCccceEEEEeCCCCcEEECCCC
Confidence 8765 5689999888766555433
No 308
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=97.41 E-value=0.023 Score=46.09 Aligned_cols=153 Identities=12% Similarity=0.097 Sum_probs=76.9
Q ss_pred CCCEEEEEeCC-----CcEEEEEccCCeEEEE--eecCCCceEEEEeCCCCeEEEEcCCC-----eEEEEEcCCCCCCcc
Q 047325 165 DCGLLYTASWD-----RTFKVWRISDSKCLES--VSAHDDAVNSVVSSSEGLIFTGSADG-----TVKVWKREQHGKGTK 232 (368)
Q Consensus 165 ~~~~l~~~~~d-----~~i~iwd~~~~~~~~~--~~~~~~~v~~~~~~~~~~l~~~~~dg-----~i~i~d~~~~~~~~~ 232 (368)
++..++.|+.+ ..+.+||+.+.+-... +....... +++...+..++.|+.++ .+.+||+.+..
T Consensus 61 ~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~-~~~~~~~~iyv~GG~~~~~~~~~~~~~d~~~~~---- 135 (302)
T 2xn4_A 61 AGLVFAVGGFNGSLRVRTVDSYDPVKDQWTSVANMRDRRSTL-GAAVLNGLLYAVGGFDGSTGLSSVEAYNIKSNE---- 135 (302)
T ss_dssp TTEEEEESCBCSSSBCCCEEEEETTTTEEEEECCCSSCCBSC-EEEEETTEEEEEEEECSSCEEEEEEEEETTTTE----
T ss_pred CCEEEEEeCcCCCccccceEEECCCCCceeeCCCCCccccce-EEEEECCEEEEEcCCCCCccCceEEEEeCCCCe----
Confidence 45566666644 3588999887653222 22111112 22222233556665443 57788876542
Q ss_pred cccceeeccccccEEEEEEcCCCCEEEEecCC-------CcEEEEeCCCccccce-eeeccceEEEEEEeCCCEEEEeeC
Q 047325 233 HSLAQTLLKQECAVTALVVSSSRSIVYCGSSD-------GLVNFWEREKQLSHGG-VLKGHKLAVLCLAAAGKLVFSGSA 304 (368)
Q Consensus 233 ~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d-------g~i~i~d~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~ 304 (368)
................+.+ ++++++.|+.+ ..+.+||+.+..-... ..........+...++++++.|+.
T Consensus 136 W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~ 213 (302)
T 2xn4_A 136 WFHVAPMNTRRSSVGVGVV--GGLLYAVGGYDVASRQCLSTVECYNATTNEWTYIAEMSTRRSGAGVGVLNNLLYAVGGH 213 (302)
T ss_dssp EEEECCCSSCCBSCEEEEE--TTEEEEECCEETTTTEECCCEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEECCB
T ss_pred EeecCCCCCcccCceEEEE--CCEEEEEeCCCCCCCccccEEEEEeCCCCcEEECCCCccccccccEEEECCEEEEECCC
Confidence 1111111111112222222 56677776543 3588999876432111 111111111233457888888876
Q ss_pred C-----CeEEEEecCCCceeeeEee
Q 047325 305 D-----KTICVWRRDGAIHTCLSVL 324 (368)
Q Consensus 305 d-----g~i~iw~~~~~~~~~~~~~ 324 (368)
+ ..+.+||+.+.....+..+
T Consensus 214 ~~~~~~~~~~~yd~~~~~W~~~~~~ 238 (302)
T 2xn4_A 214 DGPLVRKSVEVYDPTTNAWRQVADM 238 (302)
T ss_dssp SSSSBCCCEEEEETTTTEEEEECCC
T ss_pred CCCcccceEEEEeCCCCCEeeCCCC
Confidence 5 3688999887766555433
No 309
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Probab=97.41 E-value=0.11 Score=50.50 Aligned_cols=271 Identities=12% Similarity=0.072 Sum_probs=138.8
Q ss_pred CCcEEEEEec--------CCEEEEccC-CCcEEEEcCCcc--ee--cccCCCCCeeEEEEe----CCEEEEEeCCCeEEE
Q 047325 44 EGHIYSLAAS--------KDLLYTGSD-SKNIRVWKNLKE--FC--GFKASSGLVKAIVIS----GEKIFTGHQDGKIRV 106 (368)
Q Consensus 44 ~~~i~~~~~~--------~~~l~s~~~-dg~i~iw~~~~~--~~--~~~~~~~~v~~~~~~----~~~l~s~~~dg~i~v 106 (368)
.+.|.|+++. .++++.|.. |++|+|+++... +. .+. ......++.+. ..+|..|-.||.+..
T Consensus 553 ~~evscl~i~~~~~~~~~s~~~aVg~~~d~tv~I~sL~~l~~~~~~~L~-~~~~p~si~l~~~~~~~~L~igl~dG~l~~ 631 (1158)
T 3ei3_A 553 EHEVACLDITPLGDSNGLSPLCAIGLWTDISARILKLPSFELLHKEMLG-GEIIPRSILMTTFESSHYLLCALGDGALFY 631 (1158)
T ss_dssp SSCEEEEECCCCSSSTTCCSEEEEEETTTTEEEEEETTTCCEEEEEECC-SSCCEEEEEEEEETTEEEEEEEETTSEEEE
T ss_pred CCceEEEEeecCCCCcccccEEEEEECCCCEEEEEECCCCCeEEEEECC-CCCCCcEEEEEEeCCCcEEEEEeCCCeEEE
Confidence 4579999975 248899986 999999998642 11 111 12244455443 347889999999887
Q ss_pred EeecCCCccccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcCCCC-EEEEEeCCCcEEEEEccC
Q 047325 107 WKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCG-LLYTASWDRTFKVWRISD 185 (368)
Q Consensus 107 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~i~iwd~~~ 185 (368)
+.++...-.. .... ..+.| ..++.-..+...+. .+++++ +....++--.
T Consensus 632 ~~~d~~tg~l-------~d~r--------------------~~~LG-~~pv~L~~~~~~~~~~V~a~s-~rp~liy~~~- 681 (1158)
T 3ei3_A 632 FGLNIETGLL-------SDRK--------------------KVTLG-TQPTVLRTFRSLSTTNVFACS-DRPTVIYSSN- 681 (1158)
T ss_dssp EEECTTTCCE-------EEEE--------------------EEECC-SSCCEEEEEESSSCEEEEEES-SSCEEEEESS-
T ss_pred EEEcCCCCcc-------ccce--------------------eEEcC-CCceEEEEEeeCCceeEEEEC-CCCEEEEEcC-
Confidence 7765321000 0000 00111 12333223322222 233333 3444444322
Q ss_pred CeEEEEeecCCCceEEE-EeC----CCCeEEEEcCCCeEEEEEcCCCCCCcccccceeeccccccEEEEEEcCCCCEEEE
Q 047325 186 SKCLESVSAHDDAVNSV-VSS----SEGLIFTGSADGTVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSSSRSIVYC 260 (368)
Q Consensus 186 ~~~~~~~~~~~~~v~~~-~~~----~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~ 260 (368)
++.... .-....+..+ .|+ |++.++ .+ ++.++|..+....+ .......-...+..++++|+.+.++.
T Consensus 682 ~~l~~s-~l~~~~v~~~~~F~se~~~~g~v~-~~-~~~LrI~~i~~~~~-----~~~~~ipL~~Tprri~y~~~~~~~~v 753 (1158)
T 3ei3_A 682 HKLVFS-NVNLKEVNYMCPLNSDGYPDSLAL-AN-NSTLTIGTIDEIQK-----LHIRTVPLYESPRKICYQEVSQCFGV 753 (1158)
T ss_dssp SSEEEE-EBSSSCCCEEEEECCSSSTTEEEE-EC-SSCEEEEEECCSSS-----EEEEEEECSSEEEEEEEEGGGTEEEE
T ss_pred CceEEe-ccChHHhceEeccCcccCCCcEEE-Ec-CCceEEEEecccCC-----eeEEEEeCCCCceEEEEcCCCCEEEE
Confidence 222211 1111223222 343 334443 23 45699988754321 11222223456788888887776554
Q ss_pred ecCC-------------------------------------------------CcEEEEeCCCccccceeeeccceEEEE
Q 047325 261 GSSD-------------------------------------------------GLVNFWEREKQLSHGGVLKGHKLAVLC 291 (368)
Q Consensus 261 ~~~d-------------------------------------------------g~i~i~d~~~~~~~~~~~~~~~~~~~~ 291 (368)
+..+ +.|++.|..+.+............+.+
T Consensus 754 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~s~i~lidp~t~~~i~~~~l~~nE~~~s 833 (1158)
T 3ei3_A 754 LSSRIEVQDTSGGTTALRPSASTQALSSSVSSSKLFSSSTAPHETSFGEEVEVHNLLIIDQHTFEVLHAHQFLQNEYALS 833 (1158)
T ss_dssp EEEEEEEECSSSSEEESSCCHHHHCSEEEECCCCCC----------CCCEEEEEEEEEEETTTCCEEEEEECCTTEEEEE
T ss_pred EEEeccccccccccchhhhhhhhhhhhhcccccccccccccCchhhcCCceeeEEEEEEeCCCCeEEEEEeCCCCcceEE
Confidence 4321 124455544433221111122223333
Q ss_pred EE---eC---CCEEEEee----------CCCeEEEEecCCCceeeeEeeeccccCeeEEEEecCCeeeecCCcceEEEEE
Q 047325 292 LA---AA---GKLVFSGS----------ADKTICVWRRDGAIHTCLSVLTGHTGPVKCLAVEEDRDSSSSTSSCAQRWIV 355 (368)
Q Consensus 292 ~~---~~---~~~l~~~~----------~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~w~l 355 (368)
+. .. ..++++|. ..|.|++|++...+.+.+... ...++|++|+-- +|.++++.+....+|.+
T Consensus 834 v~~v~~~~~~~~~lvVGTa~~~~~e~~~~~Gri~vf~v~~~kL~lv~~~-~v~g~v~al~~~-~g~Lla~ig~~l~vy~l 911 (1158)
T 3ei3_A 834 LVSCKLGKDPNTYFIVGTAMVYPEEAEPKQGRIVVFQYSDGKLQTVAEK-EVKGAVYSMVEF-NGKLLASINSTVRLYEW 911 (1158)
T ss_dssp EEEECCTTCCCCEEEEEEEECCTTCSSCCCEEEEEEEEETTEEEEEEEE-EESSCEEEEEEE-TTEEEEEETTEEEEEEE
T ss_pred EEEEEEccCCCEEEEEEeeecCCCCCCCCceEEEEEEEECCEEEEEEEE-EcCCcCEEEeee-CCEEEEEcCCEEEEEEC
Confidence 33 22 46888886 358899999975544444443 356789998754 46777777777877765
No 310
>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*
Probab=97.39 E-value=0.0061 Score=46.11 Aligned_cols=146 Identities=6% Similarity=-0.068 Sum_probs=80.5
Q ss_pred CCEeEEEEcCCCCEEEEEeCCCcEEEEEccCCeE------EEEeec-CCCceEEEEeCCCCeEEEEcCCCeEEEEEcCCC
Q 047325 155 DAVSCMSLDQDCGLLYTASWDRTFKVWRISDSKC------LESVSA-HDDAVNSVVSSSEGLIFTGSADGTVKVWKREQH 227 (368)
Q Consensus 155 ~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~------~~~~~~-~~~~v~~~~~~~~~~l~~~~~dg~i~i~d~~~~ 227 (368)
..+..++|+|++.+.++ .+|.+.-.+..+.+. -..+-. --..-.++.|.++|.|.++ .||.|+-++.-+.
T Consensus 41 ~~~~~laf~P~G~LYaV--~~G~Ly~~~~~t~~~~~W~~s~t~IG~~Gw~~F~a~~fD~~G~LYav-~dG~iyr~~pP~~ 117 (236)
T 1tl2_A 41 SNFKFLFLSPGGELYGV--LNDKIYKGTPPTHDNDNWMGRAKKIGNGGWNQFQFLFFDPNGYLYAV-SKDKLYKASPPQS 117 (236)
T ss_dssp TTCSEEEECTTSCEEEE--ETTEEEEESCCCSTTCCHHHHCEEEECSCGGGCSEEEECTTSCEEEE-ETTEEEEESCCCS
T ss_pred ccceeEEECCCccEEEE--eCCeEEEECCCCCCcccccccccEecccccccceEEEECCCCCEEEe-CCCEEEEeCCCcC
Confidence 36779999998886666 678777777654221 111110 0011478899999966666 6799988875332
Q ss_pred CCCcccccceee-ccccccEEEEEEcCCCCEEEEecCCCcEEEEeCCCcccc-----cee---eeccceEEEEEEeCCCE
Q 047325 228 GKGTKHSLAQTL-LKQECAVTALVVSSSRSIVYCGSSDGLVNFWEREKQLSH-----GGV---LKGHKLAVLCLAAAGKL 298 (368)
Q Consensus 228 ~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~-----~~~---~~~~~~~~~~~~~~~~~ 298 (368)
....-.-....+ ...=..+..+.+.|+|.+-+.. |+.++-......... ... -.-|..+.+.+.+++.+
T Consensus 118 ~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav~--dg~lyr~~~P~~~~~~wl~~~~~~g~~g~~~yr~l~f~~~G~l 195 (236)
T 1tl2_A 118 DTDNWIARATEVGSGGWSGFKFLFFHPNGYLYAVH--GQQFYKALPPVSNQDNWLARATKIGQGGWDTFKFLFFSSVGTL 195 (236)
T ss_dssp TTCCHHHHSEEEECSSGGGEEEEEECTTSCEEEEE--TTEEEEECCCSSTTCCHHHHCEEEESSSGGGEEEEEECTTSCE
T ss_pred CCCceeccccEeccCCCCceEEEEECCCceEEEEe--CCcEEecCCCCCCCcccccccceeccCCcceEEEEEECCCCcE
Confidence 221100001111 1112457999999999877777 777544332211100 011 11234444556667766
Q ss_pred EEEeeCCCe
Q 047325 299 VFSGSADKT 307 (368)
Q Consensus 299 l~~~~~dg~ 307 (368)
.++. +|.
T Consensus 196 ~~v~--~g~ 202 (236)
T 1tl2_A 196 FGVQ--GGK 202 (236)
T ss_dssp EEEE--TTE
T ss_pred EEEe--CCe
Confidence 6655 663
No 311
>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=97.36 E-value=0.048 Score=45.34 Aligned_cols=104 Identities=6% Similarity=0.078 Sum_probs=60.6
Q ss_pred CCEeEEEEcCCCCEEEEEeCCCcEEEEEccCCeE--EEEee---cCCCceEEEEeCCC----CeEEEEcC-C-----CeE
Q 047325 155 DAVSCMSLDQDCGLLYTASWDRTFKVWRISDSKC--LESVS---AHDDAVNSVVSSSE----GLIFTGSA-D-----GTV 219 (368)
Q Consensus 155 ~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~--~~~~~---~~~~~v~~~~~~~~----~~l~~~~~-d-----g~i 219 (368)
.....++|.|++++ +++..+|.|.+++ .++. +..+. ........++++|+ +.|+++.. . +.|
T Consensus 31 ~~P~~ia~~pdG~l-~V~e~~g~I~~i~--~g~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~~v 107 (352)
T 2ism_A 31 EVPWALAFLPDGGM-LIAERPGRIRLFR--EGRLSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGLRNQV 107 (352)
T ss_dssp SCEEEEEECTTSCE-EEEETTTEEEEEE--TTEEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSSEEEE
T ss_pred CCceEEEEcCCCeE-EEEeCCCeEEEEE--CCCccEeecceEeecCCCCceeEEECCCCCCCCEEEEEEecCCCCCccEE
Confidence 45678999999984 4556679999998 4442 22221 12356789999998 44444433 2 678
Q ss_pred EEEEcCCCCCCcccccceeec---cccccEEEEEEcCCCCEEEEe
Q 047325 220 KVWKREQHGKGTKHSLAQTLL---KQECAVTALVVSSSRSIVYCG 261 (368)
Q Consensus 220 ~i~d~~~~~~~~~~~~~~~~~---~~~~~i~~~~~~~~~~~l~~~ 261 (368)
..++...............+. ........++|.|+|.+.++.
T Consensus 108 ~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~ 152 (352)
T 2ism_A 108 VRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGMLYVTT 152 (352)
T ss_dssp EEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSCEEEEC
T ss_pred EEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCCEEEEE
Confidence 888876321100111111122 111223689999999766664
No 312
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Probab=97.32 E-value=0.14 Score=49.80 Aligned_cols=225 Identities=9% Similarity=0.093 Sum_probs=118.9
Q ss_pred CCCeeEEEEeCCEEEEEeCCCeEEEEeecCCCccccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEE
Q 047325 82 SGLVKAIVISGEKIFTGHQDGKIRVWKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMS 161 (368)
Q Consensus 82 ~~~v~~~~~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 161 (368)
...|...+.++.+++.++ ++.+.+++++.++..... -..-...|.|++
T Consensus 513 ~~~I~~As~n~~~vvva~-g~~l~~fel~~~~L~~~~-------------------------------~~~l~~evscl~ 560 (1158)
T 3ei3_A 513 AKNISVASCNSSQVVVAV-GRALYYLQIHPQELRQIS-------------------------------HTEMEHEVACLD 560 (1158)
T ss_dssp CCCCCEEEECSSEEEEEE-TTEEEEEEEETTEEEEEE-------------------------------EEECSSCEEEEE
T ss_pred CCEEEEEEeCCCEEEEEE-CCEEEEEEeeCCceeeec-------------------------------ccCCCCceEEEE
Confidence 346777777777777775 678888887753211100 011356799999
Q ss_pred EcCC------CCEEEEEeC-CCcEEEEEccCCeEEEEeecC-CCceEEEEeC--CCC-eEEEEcCCCeEEEEEcCCCCCC
Q 047325 162 LDQD------CGLLYTASW-DRTFKVWRISDSKCLESVSAH-DDAVNSVVSS--SEG-LIFTGSADGTVKVWKREQHGKG 230 (368)
Q Consensus 162 ~~~~------~~~l~~~~~-d~~i~iwd~~~~~~~~~~~~~-~~~v~~~~~~--~~~-~l~~~~~dg~i~i~d~~~~~~~ 230 (368)
+.|. .+++++|.. |++++|+++.+.+.+....-. .....++.+. ... +|..|-.||.+..+.++....
T Consensus 561 i~~~~~~~~~s~~~aVg~~~d~tv~I~sL~~l~~~~~~~L~~~~~p~si~l~~~~~~~~L~igl~dG~l~~~~~d~~tg- 639 (1158)
T 3ei3_A 561 ITPLGDSNGLSPLCAIGLWTDISARILKLPSFELLHKEMLGGEIIPRSILMTTFESSHYLLCALGDGALFYFGLNIETG- 639 (1158)
T ss_dssp CCCCSSSTTCCSEEEEEETTTTEEEEEETTTCCEEEEEECCSSCCEEEEEEEEETTEEEEEEEETTSEEEEEEECTTTC-
T ss_pred eecCCCCcccccEEEEEECCCCEEEEEECCCCCeEEEEECCCCCCCcEEEEEEeCCCcEEEEEeCCCeEEEEEEcCCCC-
Confidence 8763 368999996 999999999887666443321 1233343322 223 889999999987777653211
Q ss_pred cccccceeeccccccEEEEEEcCCCC-EEEEecCCCcEEEEeCCCccccceeeecc-ceEEEEEEeC--CCEEEEeeCCC
Q 047325 231 TKHSLAQTLLKQECAVTALVVSSSRS-IVYCGSSDGLVNFWEREKQLSHGGVLKGH-KLAVLCLAAA--GKLVFSGSADK 306 (368)
Q Consensus 231 ~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~-~~~~~~~~~~--~~~l~~~~~dg 306 (368)
..........+ ..++.-..+...+. .+++.+ +.-..+|..+..... ...... -..+..|+-. .+-++..+ ++
T Consensus 640 ~l~d~r~~~LG-~~pv~L~~~~~~~~~~V~a~s-~rp~liy~~~~~l~~-s~l~~~~v~~~~~F~se~~~~g~v~~~-~~ 715 (1158)
T 3ei3_A 640 LLSDRKKVTLG-TQPTVLRTFRSLSTTNVFACS-DRPTVIYSSNHKLVF-SNVNLKEVNYMCPLNSDGYPDSLALAN-NS 715 (1158)
T ss_dssp CEEEEEEEECC-SSCCEEEEEESSSCEEEEEES-SSCEEEEESSSSEEE-EEBSSSCCCEEEEECCSSSTTEEEEEC-SS
T ss_pred ccccceeEEcC-CCceEEEEEeeCCceeEEEEC-CCCEEEEEcCCceEE-eccChHHhceEeccCcccCCCcEEEEc-CC
Confidence 00000011112 22333333333333 333333 343444443322111 111111 1123333321 33444443 45
Q ss_pred eEEEEecCCCceeeeEeeeccccCeeEEEEecCCeeee
Q 047325 307 TICVWRRDGAIHTCLSVLTGHTGPVKCLAVEEDRDSSS 344 (368)
Q Consensus 307 ~i~iw~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~ 344 (368)
.++|..++....-.++.+. -...+..++++|+.+.++
T Consensus 716 ~LrI~~i~~~~~~~~~~ip-L~~Tprri~y~~~~~~~~ 752 (1158)
T 3ei3_A 716 TLTIGTIDEIQKLHIRTVP-LYESPRKICYQEVSQCFG 752 (1158)
T ss_dssp CEEEEEECCSSSEEEEEEE-CSSEEEEEEEEGGGTEEE
T ss_pred ceEEEEecccCCeeEEEEe-CCCCceEEEEcCCCCEEE
Confidence 6999988654333344443 345788999999887544
No 313
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=97.31 E-value=0.089 Score=47.45 Aligned_cols=214 Identities=8% Similarity=0.019 Sum_probs=114.3
Q ss_pred CCcEEEEcCCcc---eecccCCCCCeeEEEEe--CCEEEEEe-CCCeEEEEeecCCCccccccCCccccceeeeeccCCC
Q 047325 63 SKNIRVWKNLKE---FCGFKASSGLVKAIVIS--GEKIFTGH-QDGKIRVWKISPKNQSVHKRAGTLPTLKDIFKSSIKP 136 (368)
Q Consensus 63 dg~i~iw~~~~~---~~~~~~~~~~v~~~~~~--~~~l~s~~-~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 136 (368)
...|+..++... ............+++++ ++.|+.+. ..+.|..++++........
T Consensus 17 ~~~I~~i~~~~~~~~~~~~~~~~~~~~~ld~~~~~~~ly~sD~~~~~I~r~~~~g~~~~~~v------------------ 78 (619)
T 3s94_A 17 RRDLRLVDATNGKENATIVVGGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNV------------------ 78 (619)
T ss_dssp SSBEEEECCC---------CBCCSCEEEEEEETTTTEEEEEETTTTEEEEEEC-----CEEE------------------
T ss_pred cccEEEEeCCCCcceEEEEEcCCCceEEEEEEeCCCEEEEEECCCCeEEEEEccCCCceEEE------------------
Confidence 346777776542 22222334456788887 55665554 4677888887654210000
Q ss_pred CceeEecccceeeeeecCCCEeEEEEcCCCCEEEEE-eCCCcEEEEEccCCeEEEEeecCCCceEEEEeCCC-CeEEEEc
Q 047325 137 SNYIEVRRHRTALWIRHSDAVSCMSLDQDCGLLYTA-SWDRTFKVWRISDSKCLESVSAHDDAVNSVVSSSE-GLIFTGS 214 (368)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~-~~l~~~~ 214 (368)
...-......+++.+.+..|+.+ ...+.|.+.++........+...-.....|++.|. +.|+.+.
T Consensus 79 -------------~~~~~~~P~GlAvD~~~~~ly~~d~~~~~I~v~~~dG~~~~~l~~~~l~~P~~Iavdp~~g~ly~tD 145 (619)
T 3s94_A 79 -------------VVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTD 145 (619)
T ss_dssp -------------ECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCCEEEETTTTEEEEEE
T ss_pred -------------EeCCCCCcCeEEEEecCCEEEEEeCCCCEEEEEECCCCCEEEEEeCCCCCCceEEEecCCCeEEEec
Confidence 00012457789999865555544 45688999998654333333234445678899886 4555444
Q ss_pred C--CCeEEEEEcCCCCCCcccccceeeccccccEEEEEEcCCCCEEEE-ecCCCcEEEEeCCCcccccee--eeccceEE
Q 047325 215 A--DGTVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSSSRSIVYC-GSSDGLVNFWEREKQLSHGGV--LKGHKLAV 289 (368)
Q Consensus 215 ~--dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~-~~~dg~i~i~d~~~~~~~~~~--~~~~~~~~ 289 (368)
. .+.|...++..... .......-.....+++++++..|+. -...+.|..+|+......... ...|+
T Consensus 146 ~g~~~~I~r~~~dG~~~------~~l~~~~~~~P~Glald~~~~~LY~aD~~~~~I~~~~~dG~~~~~~~~~~~~~P--- 216 (619)
T 3s94_A 146 WGEVPKIERAGMDGSSR------FIIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVKGSLPHP--- 216 (619)
T ss_dssp CSSSCEEEEEETTSCSC------EEEECSSCSSEEEEEEETTTTEEEEEETTTCCEEEESSSCCEEC---------C---
T ss_pred cCCCCEEEEEECCCCce------EEEEeCCCCCCcEEEEEccCCEEEEEeCCCCeEEEecCCCCccEEEEeCCCCCc---
Confidence 2 46777777653311 1111123345788999986655554 455678999988753332111 11222
Q ss_pred EEEEeCCCEEE-EeeCCCeEEEEecCCC
Q 047325 290 LCLAAAGKLVF-SGSADKTICVWRRDGA 316 (368)
Q Consensus 290 ~~~~~~~~~l~-~~~~dg~i~iw~~~~~ 316 (368)
..++.++..|+ +-...+.|...|..++
T Consensus 217 ~gi~~~~~~ly~td~~~~~V~~~d~~tg 244 (619)
T 3s94_A 217 FALTLFEDILYWTDWSTHSILACNKYTG 244 (619)
T ss_dssp CCEEESSSEEEEECTTTCSEEEEESSSC
T ss_pred eEEEEeCCEEEEecCCCCEEEEEECCCC
Confidence 23444444444 4445677888876544
No 314
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=97.29 E-value=0.056 Score=44.73 Aligned_cols=182 Identities=12% Similarity=0.110 Sum_probs=102.1
Q ss_pred CEeEEEEcCCCCEEEEE------------eCCCcEEEEEccC--CeEE-EEeec-----CCCceEEEEeCC--CC--eEE
Q 047325 156 AVSCMSLDQDCGLLYTA------------SWDRTFKVWRISD--SKCL-ESVSA-----HDDAVNSVVSSS--EG--LIF 211 (368)
Q Consensus 156 ~v~~~~~~~~~~~l~~~------------~~d~~i~iwd~~~--~~~~-~~~~~-----~~~~v~~~~~~~--~~--~l~ 211 (368)
..-++.+.|+|..++++ ..+|.|.++|+.+ ++.. ..+.+ .......+.+.+ ++ +|+
T Consensus 51 G~EDi~~~~~G~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~L~ 130 (355)
T 3sre_A 51 GSEDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLL 130 (355)
T ss_dssp CCCEEEECTTSEEEEEECCC-----------CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEECTTCCEEEE
T ss_pred CcceeEEcCCCeEEEEeccccCCCcccCCCCCCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEECCCCcEEEE
Confidence 34567778877555554 1689999999873 2221 12222 123455666544 34 455
Q ss_pred EEc-C--CCeEEEEEcCCCCCCcccccceeecc-ccccEEEEEEcCCCCEEEEec-----------------CCCcEEEE
Q 047325 212 TGS-A--DGTVKVWKREQHGKGTKHSLAQTLLK-QECAVTALVVSSSRSIVYCGS-----------------SDGLVNFW 270 (368)
Q Consensus 212 ~~~-~--dg~i~i~d~~~~~~~~~~~~~~~~~~-~~~~i~~~~~~~~~~~l~~~~-----------------~dg~i~i~ 270 (368)
++. . +.+|.+|++...+. .........+ .-...+.+.+.++|.+.++.. ..|.|+.+
T Consensus 131 Vvnh~~~~s~ielf~~d~~~~--~~~~~~~~~g~~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~ 208 (355)
T 3sre_A 131 VVNHPGSSSTVEVFKFQEEEK--SLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYY 208 (355)
T ss_dssp EEECSTTCCEEEEEEEETTTT--EEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEEE
T ss_pred EEECCCCCCeEEEEEEECCCC--EEEEEeccccCCCCCCceEEEeCCCCEEecCCcEeCCcccccchhhccCCccEEEEE
Confidence 442 2 56788888865432 1122223322 234578999999998777754 12456666
Q ss_pred eCCCccccceeee-ccceEEEEEEeCCCEEEEee-CCCeEEEEecCCC-ceeeeEeeeccccCeeEEEEec-CCeee
Q 047325 271 EREKQLSHGGVLK-GHKLAVLCLAAAGKLVFSGS-ADKTICVWRRDGA-IHTCLSVLTGHTGPVKCLAVEE-DRDSS 343 (368)
Q Consensus 271 d~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~-~dg~i~iw~~~~~-~~~~~~~~~~h~~~v~~l~~~~-~~~~~ 343 (368)
|.. . ...... -....-++++||++.|+.+. ..+.|..|+++.. .......+ ...+..-.+++.+ +|.+.
T Consensus 209 d~~--~-~~~~~~~l~~pNGia~spDg~~lYvadt~~~~I~~~~~~~~g~l~~~~~~-~~~g~PDGi~vD~e~G~lw 281 (355)
T 3sre_A 209 SPN--D-VRVVAEGFDFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVL-SFDTLVDNISVDPVTGDLW 281 (355)
T ss_dssp CTT--C-CEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEE-ECSSEEEEEEECTTTCCEE
T ss_pred ECC--e-EEEeecCCcccCcceECCCCCEEEEEeCCCCeEEEEEECCCCcEecCEEE-eCCCCCceEEEeCCCCcEE
Confidence 653 1 111122 12334478999998777664 5788999998632 22222233 2245567788888 47743
No 315
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=97.28 E-value=0.033 Score=46.39 Aligned_cols=147 Identities=10% Similarity=0.016 Sum_probs=63.6
Q ss_pred CcEEEEEccCCeEEE--EeecCCCceEEEEeCCCCeEEEEcC------CCeEEEEEcCCCCCCcccccceeeccccccEE
Q 047325 176 RTFKVWRISDSKCLE--SVSAHDDAVNSVVSSSEGLIFTGSA------DGTVKVWKREQHGKGTKHSLAQTLLKQECAVT 247 (368)
Q Consensus 176 ~~i~iwd~~~~~~~~--~~~~~~~~v~~~~~~~~~~l~~~~~------dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~i~ 247 (368)
..+.+||+.+.+=.. .+......-.+++...+..++.|+. ...+..||++.... ....+...........
T Consensus 168 ~~v~~yd~~~~~W~~~~~~p~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~~d~d~~~~--~W~~~~~~~~~~~~~~ 245 (357)
T 2uvk_A 168 KFLLSFDPSTQQWSYAGESPWYGTAGAAVVNKGDKTWLINGEAKPGLRTDAVFELDFTGNNL--KWNKLAPVSSPDGVAG 245 (357)
T ss_dssp CEEEEEETTTTEEEEEEECSSCCCBSCEEEEETTEEEEECCEEETTEECCCEEEEECC---C--EEEECCCSSTTTCCBS
T ss_pred ccEEEEeCCCCcEEECCCCCCCCcccccEEEECCEEEEEeeecCCCcccCceEEEEecCCCC--cEEecCCCCCCccccc
Confidence 578999998765332 2221111112333333335556653 34577787632211 1111111111111111
Q ss_pred EEEEcCCCCEEEEecCC----------------------CcEEEEeCCCccccce-eeeccceEEEEEEeCCCEEEEeeC
Q 047325 248 ALVVSSSRSIVYCGSSD----------------------GLVNFWEREKQLSHGG-VLKGHKLAVLCLAAAGKLVFSGSA 304 (368)
Q Consensus 248 ~~~~~~~~~~l~~~~~d----------------------g~i~i~d~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~ 304 (368)
..+...++++++.|+.+ ..+.+||+++..-... ..........++..++++++.|+.
T Consensus 246 ~~~~~~~~~iyv~GG~~~~~~~~~~~~g~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~i~v~GG~ 325 (357)
T 2uvk_A 246 GFAGISNDSLIFAGGAGFKGSRENYQNGKNYAHEGLKKSYSTDIHLWHNGKWDKSGELSQGRAYGVSLPWNNSLLIIGGE 325 (357)
T ss_dssp CEEEEETTEEEEECCEECTTHHHHHHTTCSSTTTTCCCEECCEEEECC---CEEEEECSSCCBSSEEEEETTEEEEEEEE
T ss_pred ceEEEECCEEEEEcCccccCCcccccccceeccccccceeeEEEEecCCCceeeCCCCCCCcccceeEEeCCEEEEEeee
Confidence 11112256677777632 2477899875432211 111111112334568888888886
Q ss_pred CC------eEEEEecCCCceeeeEee
Q 047325 305 DK------TICVWRRDGAIHTCLSVL 324 (368)
Q Consensus 305 dg------~i~iw~~~~~~~~~~~~~ 324 (368)
++ .|.++++++.+......+
T Consensus 326 ~~~~~~~~~v~~l~~~~~~~~~~~~~ 351 (357)
T 2uvk_A 326 TAGGKAVTDSVLITVKDNKVTVQNLE 351 (357)
T ss_dssp CGGGCEEEEEEEEEC-CCSCEEEC--
T ss_pred CCCCCEeeeEEEEEEcCcEeEeeecc
Confidence 53 355557766644433333
No 316
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A
Probab=97.24 E-value=0.13 Score=47.84 Aligned_cols=181 Identities=8% Similarity=0.106 Sum_probs=95.1
Q ss_pred CEeEEEEcCCCCEEEEEeCCCcEEEEEccCCeEEEEeecCCCceEEEEeCCCCeEEEEcCCCeEEEEEcCCCCCCccccc
Q 047325 156 AVSCMSLDQDCGLLYTASWDRTFKVWRISDSKCLESVSAHDDAVNSVVSSSEGLIFTGSADGTVKVWKREQHGKGTKHSL 235 (368)
Q Consensus 156 ~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~ 235 (368)
.|.++...+++..|..|+. +-+..+|..+++...........|.++...+++.|..|+. +-+.+++.....- .....
T Consensus 192 ~i~~i~~d~~~~~lWigt~-~Gl~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWigT~-~Gl~~~~~~~~~~-~~~~~ 268 (758)
T 3ott_A 192 FVNSLLEDTTRQCVWIGTE-GYLFQYFPSTGQIKQTEAFHNNSIKSLALDGNGDLLAGTD-NGLYVYHNDTTPL-QHIIH 268 (758)
T ss_dssp CEEEEEEETTTTEEEEEEE-EEEEEEETTTTEEEEEEEEEEEEEEEEEECTTCCEEEEET-TEEEEECCTTSCC-EEECC
T ss_pred eeEEEEEECCCCEEEEEEC-CCCeEEcCCCCeEEeccCCCCCeEEEEEEcCCCCEEEEeC-CceeEEecCCCcE-EEEEc
Confidence 4888888877776666664 4588899877654322112234688888888887777774 4688888754311 00000
Q ss_pred --ceeeccccccEEEEEEcCCCCEEEEecCCCcEEEEeCCCcccccee----eeccceEEEEEEeC-CCEEEEeeCCCeE
Q 047325 236 --AQTLLKQECAVTALVVSSSRSIVYCGSSDGLVNFWEREKQLSHGGV----LKGHKLAVLCLAAA-GKLVFSGSADKTI 308 (368)
Q Consensus 236 --~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~----~~~~~~~~~~~~~~-~~~l~~~~~dg~i 308 (368)
.....-....|.++....+++ |..|+..| +.++........... .......+.++..| ...|..|+.+| +
T Consensus 269 ~~~~~~~l~~~~i~~i~~D~~g~-lWiGT~~G-l~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~D~~g~lWiGt~~G-l 345 (758)
T 3ott_A 269 DSRNIQSLTNNIIWNIFADQEHN-IWLGTDYG-ISLSRYNSALQFIPISQITGTGDGNQFYSLFRDSKGFYWFGGANG-L 345 (758)
T ss_dssp CTTCTTSCSCSCEEEEEECTTCC-EEEEESSS-EEEECCCC-CEEEEHHHHSCSCCCCBEEEEEECTTCCEEEEETTE-E
T ss_pred CCCCcCcCCcCeEEEEEEcCCCC-EEEEeCCc-ccccccCCceeEEecccCCCCCCCceEEEEEEcCCCCEEEeeCCc-c
Confidence 000011234688998887776 44555567 555433221110000 00112346666664 33455566555 5
Q ss_pred EEEecCCCceeeeEeee-------ccccCeeEEEEecCCee
Q 047325 309 CVWRRDGAIHTCLSVLT-------GHTGPVKCLAVEEDRDS 342 (368)
Q Consensus 309 ~iw~~~~~~~~~~~~~~-------~h~~~v~~l~~~~~~~~ 342 (368)
..++..+........+. -....|.++.-..++.+
T Consensus 346 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~l 386 (758)
T 3ott_A 346 IRFTDPAGERHDAIWYRMGDKTYPLSHNRIRHIYEDKEQQL 386 (758)
T ss_dssp EEESCTTSSCCCCEEECTTCSSSCCSCSCEEEEEECTTSCE
T ss_pred eeecccccccceeEEeccCCcCCCCCCCceEEEEECCCCCE
Confidence 56654432111111111 01235788887777764
No 317
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=97.10 E-value=0.15 Score=46.01 Aligned_cols=214 Identities=11% Similarity=0.043 Sum_probs=121.3
Q ss_pred CCCcEEEEcCCccee--cc-cCCCCCeeEEEEe--CCEEE-EEeCCCeEEEEeecCCCccccccCCccccceeeeeccCC
Q 047325 62 DSKNIRVWKNLKEFC--GF-KASSGLVKAIVIS--GEKIF-TGHQDGKIRVWKISPKNQSVHKRAGTLPTLKDIFKSSIK 135 (368)
Q Consensus 62 ~dg~i~iw~~~~~~~--~~-~~~~~~v~~~~~~--~~~l~-s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (368)
....|+..++..... .. ...-....+++|+ ++.|+ +-..++.|..++++..........
T Consensus 13 ~~~~I~~i~l~~~~~~~~~~~~~~~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~~~~v~~~--------------- 77 (628)
T 4a0p_A 13 RRADIRRISLETNNNNVAIPLTGVKEASALDFDVTDNRIYWTDISLKTISRAFMNGSALEHVVEF--------------- 77 (628)
T ss_dssp ETTEEEEEESSCTTCEEECCCCSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECS---------------
T ss_pred eCCcEEEEECCCCCcceEEEcCCCCceEEEEEECCCCEEEEEECCCCeEEEEECCCCCcEEEEeC---------------
Confidence 345677777763211 11 1123457788888 45555 445678888888765432111110
Q ss_pred CCceeEecccceeeeeecCCCEeEEEEcCCCCEEEEE-eCCCcEEEEEccCCeEEEEeecCCCceEEEEeCCC-CeEEEE
Q 047325 136 PSNYIEVRRHRTALWIRHSDAVSCMSLDQDCGLLYTA-SWDRTFKVWRISDSKCLESVSAHDDAVNSVVSSSE-GLIFTG 213 (368)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~-~~l~~~ 213 (368)
-......+++.+.+..|+.+ ...+.|.+.++........+...-.....+++.|. |.|+..
T Consensus 78 -----------------g~~~P~GlAvD~~~~~LY~tD~~~~~I~v~~~dG~~~~~l~~~~l~~P~~iavdp~~G~lY~t 140 (628)
T 4a0p_A 78 -----------------GLDYPEGMAVDWLGKNLYWADTGTNRIEVSKLDGQHRQVLVWKDLDSPRALALDPAEGFMYWT 140 (628)
T ss_dssp -----------------SCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSTTCEEEECSSCCCEEEEEEETTTTEEEEE
T ss_pred -----------------CCCCcceEEEEeCCCEEEEEECCCCEEEEEecCCCcEEEEEeCCCCCcccEEEccCCCeEEEe
Confidence 11345678888765555444 45678999998654332223233455689999984 555554
Q ss_pred c--CCCeEEEEEcCCCCCCcccccceeeccccccEEEEEEcCCCCEEEEe-cCCCcEEEEeCCCccccceeeeccceEEE
Q 047325 214 S--ADGTVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSSSRSIVYCG-SSDGLVNFWEREKQLSHGGVLKGHKLAVL 290 (368)
Q Consensus 214 ~--~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~~dg~i~i~d~~~~~~~~~~~~~~~~~~~ 290 (368)
. ..+.|...++..... ..+...-.....++++++++.|+.+ ...+.|..+|+...... .+......-.
T Consensus 141 D~g~~~~I~r~~~dG~~~-------~~l~~~~~~P~GlalD~~~~~LY~aD~~~~~I~~~d~dG~~~~--v~~~~l~~P~ 211 (628)
T 4a0p_A 141 EWGGKPKIDRAAMDGSER-------TTLVPNVGRANGLTIDYAKRRLYWTDLDTNLIESSNMLGLNRE--VIADDLPHPF 211 (628)
T ss_dssp ECSSSCEEEEEETTSCSC-------EEEECSCSSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCE--EEEECCSCEE
T ss_pred CCCCCCEEEEEeCCCCce-------EEEECCCCCcceEEEccccCEEEEEECCCCEEEEEcCCCCceE--EeeccCCCce
Confidence 4 356788887764321 1122234567899999976655554 45678999998754331 2222112223
Q ss_pred EEEeCCCEEEEe-eCCCeEEEEecCCC
Q 047325 291 CLAAAGKLVFSG-SADKTICVWRRDGA 316 (368)
Q Consensus 291 ~~~~~~~~l~~~-~~dg~i~iw~~~~~ 316 (368)
.++.++..|+.. ...+.|...|..++
T Consensus 212 glav~~~~ly~tD~~~~~I~~~dk~tg 238 (628)
T 4a0p_A 212 GLTQYQDYIYWTDWSRRSIERANKTSG 238 (628)
T ss_dssp EEEEETTEEEEEETTTTEEEEEETTTC
T ss_pred EEEEECCEEEEecCCCCEEEEEECCCC
Confidence 444444444444 45788888875443
No 318
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=96.98 E-value=0.2 Score=45.24 Aligned_cols=176 Identities=13% Similarity=0.083 Sum_probs=98.7
Q ss_pred CCEeEEEEcCCCCEEEEEe-CCCcEEEEEccCCeE-EEEeecCCCceEEEEeCCCC--eEEEEcCCCeEEEEEcCCCCCC
Q 047325 155 DAVSCMSLDQDCGLLYTAS-WDRTFKVWRISDSKC-LESVSAHDDAVNSVVSSSEG--LIFTGSADGTVKVWKREQHGKG 230 (368)
Q Consensus 155 ~~v~~~~~~~~~~~l~~~~-~d~~i~iwd~~~~~~-~~~~~~~~~~v~~~~~~~~~--~l~~~~~dg~i~i~d~~~~~~~ 230 (368)
.....++|++.+..|+.+. ..+.|..+++..... ...+...-.....+++.+.+ .+++-...+.|.+.++.....
T Consensus 40 ~~~~~ld~~~~~~~ly~sD~~~~~I~r~~~~g~~~~~~v~~~~~~~P~GlAvD~~~~~ly~~d~~~~~I~v~~~dG~~~- 118 (619)
T 3s94_A 40 EDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLR- 118 (619)
T ss_dssp SCEEEEEEETTTTEEEEEETTTTEEEEEEC-----CEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC-
T ss_pred CceEEEEEEeCCCEEEEEECCCCeEEEEEccCCCceEEEEeCCCCCcCeEEEEecCCEEEEEeCCCCEEEEEECCCCCE-
Confidence 4567899998777666665 457788888865432 22333333567888888744 555666788999999875321
Q ss_pred cccccceeeccccccEEEEEEcCCCCEEEEec--CCCcEEEEeCCCccccceee--eccceEEEEEEeCCCEEEEe-eCC
Q 047325 231 TKHSLAQTLLKQECAVTALVVSSSRSIVYCGS--SDGLVNFWEREKQLSHGGVL--KGHKLAVLCLAAAGKLVFSG-SAD 305 (368)
Q Consensus 231 ~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~--~dg~i~i~d~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~-~~d 305 (368)
.......-.....|++.|.+..|+.+. ..+.|...++...... ... ......-++++++++.|+.+ ...
T Consensus 119 -----~~l~~~~l~~P~~Iavdp~~g~ly~tD~g~~~~I~r~~~dG~~~~-~l~~~~~~~P~Glald~~~~~LY~aD~~~ 192 (619)
T 3s94_A 119 -----KVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRF-IIINSEIYWPNGLTLDYEEQKLYWADAKL 192 (619)
T ss_dssp -----EEEECSSCSCCCCEEEETTTTEEEEEECSSSCEEEEEETTSCSCE-EEECSSCSSEEEEEEETTTTEEEEEETTT
T ss_pred -----EEEEeCCCCCCceEEEecCCCeEEEeccCCCCEEEEEECCCCceE-EEEeCCCCCCcEEEEEccCCEEEEEeCCC
Confidence 111112334567899998755555444 2467777777643221 111 11223346777766655555 456
Q ss_pred CeEEEEecCCCceeeeEeeeccccCeeEEEEecC
Q 047325 306 KTICVWRRDGAIHTCLSVLTGHTGPVKCLAVEED 339 (368)
Q Consensus 306 g~i~iw~~~~~~~~~~~~~~~h~~~v~~l~~~~~ 339 (368)
+.|...+++......+. .+......+|++.++
T Consensus 193 ~~I~~~~~dG~~~~~~~--~~~~~~P~gi~~~~~ 224 (619)
T 3s94_A 193 NFIHKSNLDGTNRQAVV--KGSLPHPFALTLFED 224 (619)
T ss_dssp CCEEEESSSCCEEC-----------CCCEEESSS
T ss_pred CeEEEecCCCCccEEEE--eCCCCCceEEEEeCC
Confidence 78999988765333222 112223356677666
No 319
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=96.93 E-value=0.12 Score=42.05 Aligned_cols=150 Identities=9% Similarity=0.035 Sum_probs=75.1
Q ss_pred CCCEEEEEeCC--------CcEEEEEccCCeEEE--EeecCCCceEEEEeCCCCeEEEEcC------CCeEEEEEcCCCC
Q 047325 165 DCGLLYTASWD--------RTFKVWRISDSKCLE--SVSAHDDAVNSVVSSSEGLIFTGSA------DGTVKVWKREQHG 228 (368)
Q Consensus 165 ~~~~l~~~~~d--------~~i~iwd~~~~~~~~--~~~~~~~~v~~~~~~~~~~l~~~~~------dg~i~i~d~~~~~ 228 (368)
++..++.|+.+ ..+.+||+.+.+-.. .+...... .+++...+..++.|+. -..+.+||+.+..
T Consensus 98 ~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~-~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~ 176 (315)
T 4asc_A 98 LNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDPLPYVVYG-HTVLSHMDLVYVIGGKGSDRKCLNKMCVYDPKKFE 176 (315)
T ss_dssp TTEEEEECCEESSTTCCBCCCEEEEETTTTEEEECCCCSSCCBS-CEEEEETTEEEEECCBCTTSCBCCCEEEEETTTTE
T ss_pred CCEEEEEeCCcCCCCCcccceEEEECCCCCcEeECCCCCCcccc-eeEEEECCEEEEEeCCCCCCcccceEEEEeCCCCe
Confidence 45566666632 458899998765322 22111111 1222223335666665 2468899987542
Q ss_pred CCcccccceeeccccccEEEEEEcCCCCEEEEecCCC-----cEEEEeCCCcccccee-eeccceEEEEEEeCCCEEEEe
Q 047325 229 KGTKHSLAQTLLKQECAVTALVVSSSRSIVYCGSSDG-----LVNFWEREKQLSHGGV-LKGHKLAVLCLAAAGKLVFSG 302 (368)
Q Consensus 229 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg-----~i~i~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~ 302 (368)
...............++.+ ++++++.|+.++ .+.+||+.+..-.... .........+...++++++.|
T Consensus 177 ----W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~l~v~G 250 (315)
T 4asc_A 177 ----WKELAPMQTARSLFGATVH--DGRIIVAAGVTDTGLTSSAEVYSITDNKWAPFEAFPQERSSLSLVSLVGTLYAIG 250 (315)
T ss_dssp ----EEECCCCSSCCBSCEEEEE--TTEEEEEEEECSSSEEEEEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEEE
T ss_pred ----EEECCCCCCchhceEEEEE--CCEEEEEeccCCCCccceEEEEECCCCeEEECCCCCCcccceeEEEECCEEEEEC
Confidence 1111111111111222222 567777777654 5888998764321111 111111112334577888888
Q ss_pred eCCC--------------eEEEEecCCCceeee
Q 047325 303 SADK--------------TICVWRRDGAIHTCL 321 (368)
Q Consensus 303 ~~dg--------------~i~iw~~~~~~~~~~ 321 (368)
+.++ .+.+||+++.....+
T Consensus 251 G~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~ 283 (315)
T 4asc_A 251 GFATLETESGELVPTELNDIWRYNEEEKKWEGV 283 (315)
T ss_dssp EEEEEECTTSCEEEEEEEEEEEEETTTTEEEEE
T ss_pred CccccCcCCccccccccCcEEEecCCCChhhhh
Confidence 7642 367788877655554
No 320
>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}
Probab=96.92 E-value=0.14 Score=42.61 Aligned_cols=61 Identities=20% Similarity=0.105 Sum_probs=38.3
Q ss_pred CCCEEEEeeCCCeEEEEecCCCceeeeEee-eccccCeeEEEEecCCeeeecC-CcceEEEEE
Q 047325 295 AGKLVFSGSADKTICVWRRDGAIHTCLSVL-TGHTGPVKCLAVEEDRDSSSST-SSCAQRWIV 355 (368)
Q Consensus 295 ~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~-~~h~~~v~~l~~~~~~~~~~~~-~~~~~~w~l 355 (368)
++.++++.-..+.|...+++.........+ ......+.++++.|||.+.++. ...+++|.|
T Consensus 288 ~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~rp~~v~~~pdG~lyv~td~~~g~I~ri 350 (353)
T 2g8s_A 288 QQKLFIGALKDKDVIVMSVNGDKVTEDGRILTDRGQRIRDVRTGPDGYLYVLTDESSGELLKV 350 (353)
T ss_dssp TTEEEEEETTTTEEEEEEEETTEEEEEEEESGGGCCCEEEEEECTTSCEEEEECSTTEEEEEE
T ss_pred CCcEEEEEccCCEEEEEEeCCCeEeeeEEcccCCCCceeEEEECCCCcEEEEEeCCCCEEEEE
Confidence 467777777778888888765421111222 2233579999999999865543 355666665
No 321
>2xzh_A Clathrin heavy chain 1; endocytosis, endocytosis inhibition; HET: VH2; 1.69A {Homo sapiens} PDB: 2xzg_A* 3gc3_B 1utc_A 3gd1_I 1c9i_A 1c9l_A
Probab=96.85 E-value=0.14 Score=41.48 Aligned_cols=193 Identities=12% Similarity=0.187 Sum_probs=113.9
Q ss_pred CCeEEEEeecCCCccccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcCCCCEEEEEeCCCcEEE
Q 047325 101 DGKIRVWKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCGLLYTASWDRTFKV 180 (368)
Q Consensus 101 dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i 180 (368)
..++.++|+++.++..... ....|.-=.|-.+. .|+-.+ +..|.-
T Consensus 86 g~~LQiFnletK~klks~~---------------------------------~~e~VvfWkWis~~-~L~lVT-~taVyH 130 (365)
T 2xzh_A 86 GKTLQIFNIEMKSKMKAHT---------------------------------MTDDVTFWKWISLN-TVALVT-DNAVYH 130 (365)
T ss_dssp TTEEEEEETTTTEEEEEEE---------------------------------CSSCEEEEEECSSS-EEEEEE-SSEEEE
T ss_pred CCeEEEechHHhhhhccee---------------------------------cCCccEEEEecCCC-eEEEEc-CCcEEE
Confidence 6789999999887544332 33566666776543 555555 367999
Q ss_pred EEccC-CeEEEEeecCC----CceEEEEeCCCC--eEEEEc------CCCeEEEEEcCCCCCCcccccceeeccccccEE
Q 047325 181 WRISD-SKCLESVSAHD----DAVNSVVSSSEG--LIFTGS------ADGTVKVWKREQHGKGTKHSLAQTLLKQECAVT 247 (368)
Q Consensus 181 wd~~~-~~~~~~~~~~~----~~v~~~~~~~~~--~l~~~~------~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~i~ 247 (368)
|++.. ..+.+.+..|. ..|..-..+++. .+++|- -.|.+.+|..+.. ..+.+.+|.....
T Consensus 131 Ws~~~~s~P~kvFdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~-------~sQ~ieGhaa~F~ 203 (365)
T 2xzh_A 131 WSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRK-------VSQPIEGHAASFA 203 (365)
T ss_dssp EESSTTCCCEEEEECCGGGTTCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETTTT-------EEEEECCSEEEEE
T ss_pred EcccCCCCCceeeecchhcccceEEEEEECCCCCEEEEEeEeccCCccceeEEEEeeccc-------ccceeeeeeeeeE
Confidence 99974 45666666553 456666777777 444442 2467889988753 4566677765554
Q ss_pred EEEEcCC---CCEEEEecC---CCcEEEEeCCCc---cccc-----eeeec----cceEE-EEEEeCCCEEEEeeCCCeE
Q 047325 248 ALVVSSS---RSIVYCGSS---DGLVNFWEREKQ---LSHG-----GVLKG----HKLAV-LCLAAAGKLVFSGSADKTI 308 (368)
Q Consensus 248 ~~~~~~~---~~~l~~~~~---dg~i~i~d~~~~---~~~~-----~~~~~----~~~~~-~~~~~~~~~l~~~~~dg~i 308 (368)
.+....+ .+.++.+.. .+.+++-++... .... ..+.. ..-++ +.++.....++.-+.-|.|
T Consensus 204 ~~~~~g~~~~~~lf~fa~r~~~g~kLhIiEi~~~~~~~~~f~kk~vdi~fppea~~DFPVamqvs~kygviyviTK~G~i 283 (365)
T 2xzh_A 204 QFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYI 283 (365)
T ss_dssp EECCTTCSSCEEEEEEEEEETTEEEEEEEECSSCCTTCCCCCCEEEEECCCTTCTTCCEEEEEEETTTTEEEEEETTSEE
T ss_pred EEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCCCCCCCcccccceeeCCccccCCceEEEEecccCCEEEEEeCCcEE
Confidence 4433221 113333322 258999988543 1110 00000 11222 4445556788888899999
Q ss_pred EEEecCCCceeeeEeeeccccCeeEEEEe
Q 047325 309 CVWRRDGAIHTCLSVLTGHTGPVKCLAVE 337 (368)
Q Consensus 309 ~iw~~~~~~~~~~~~~~~h~~~v~~l~~~ 337 (368)
++||++++ .++..-+-..++|-.-+..
T Consensus 284 hlyDleTg--t~i~~nrIS~d~iF~ta~~ 310 (365)
T 2xzh_A 284 HLYDLETG--TCIYMNRISGETIFVTAPH 310 (365)
T ss_dssp EEEETTTC--CEEEEEECCSSCEEEEEEE
T ss_pred EEEEcccC--cEEEEeccCCCceEEeccc
Confidence 99999988 5555544445555444443
No 322
>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*
Probab=96.70 E-value=0.13 Score=39.05 Aligned_cols=174 Identities=9% Similarity=-0.038 Sum_probs=89.2
Q ss_pred CEEEEEeCCCcEEEEEccCCe------EEEEeec-CCCceEEEEeCCCCeEEEEcCCCeEEEEEcCCCCCCcccccceee
Q 047325 167 GLLYTASWDRTFKVWRISDSK------CLESVSA-HDDAVNSVVSSSEGLIFTGSADGTVKVWKREQHGKGTKHSLAQTL 239 (368)
Q Consensus 167 ~~l~~~~~d~~i~iwd~~~~~------~~~~~~~-~~~~v~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~ 239 (368)
..|++...| +++.=...++. ....+.. -=..+..++|+|++.|.+. .+|.++-.+..+.....-......+
T Consensus 5 ~~l~~v~~d-~~y~G~~P~~~~~~~~~~a~~iG~~gw~~~~~laf~P~G~LYaV-~~G~Ly~~~~~t~~~~~W~~s~t~I 82 (236)
T 1tl2_A 5 SMLRGVYQD-KFYQGTYPQNKNDNWLARATLIGKGGWSNFKFLFLSPGGELYGV-LNDKIYKGTPPTHDNDNWMGRAKKI 82 (236)
T ss_dssp CCEEEEETT-EEEEESCCCSTTCCHHHHSEEEESSSCTTCSEEEECTTSCEEEE-ETTEEEEESCCCSTTCCHHHHCEEE
T ss_pred eEEEEEeCC-cEEecCCCCCcccchhhhccccCccccccceeEEECCCccEEEE-eCCeEEEECCCCCCcccccccccEe
Confidence 455566666 55444444333 1122221 1236779999999966666 7887766665432210000011111
Q ss_pred c-cccccEEEEEEcCCCCEEEEecCCCcEEEEeCCCccccc-----eeeec---cceEEEEEEeCCCEEEEeeCCCeEEE
Q 047325 240 L-KQECAVTALVVSSSRSIVYCGSSDGLVNFWEREKQLSHG-----GVLKG---HKLAVLCLAAAGKLVFSGSADKTICV 310 (368)
Q Consensus 240 ~-~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~-----~~~~~---~~~~~~~~~~~~~~l~~~~~dg~i~i 310 (368)
- ..-..-.++.|.|++.+.++ .||.|+-++..+..... ..+.. .....+.+.|+|.+.++. |+.++-
T Consensus 83 G~~Gw~~F~a~~fD~~G~LYav--~dG~iyr~~pP~~~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav~--dg~lyr 158 (236)
T 1tl2_A 83 GNGGWNQFQFLFFDPNGYLYAV--SKDKLYKASPPQSDTDNWIARATEVGSGGWSGFKFLFFHPNGYLYAVH--GQQFYK 158 (236)
T ss_dssp ECSCGGGCSEEEECTTSCEEEE--ETTEEEEESCCCSTTCCHHHHSEEEECSSGGGEEEEEECTTSCEEEEE--TTEEEE
T ss_pred cccccccceEEEECCCCCEEEe--CCCEEEEeCCCcCCCCceeccccEeccCCCCceEEEEECCCceEEEEe--CCcEEe
Confidence 0 00111378899999988777 56999888754321110 11111 234556677788877776 777544
Q ss_pred EecCCCc---e-eeeEeee-ccccCeeEEEEecCCeeeecC
Q 047325 311 WRRDGAI---H-TCLSVLT-GHTGPVKCLAVEEDRDSSSST 346 (368)
Q Consensus 311 w~~~~~~---~-~~~~~~~-~h~~~v~~l~~~~~~~~~~~~ 346 (368)
....... . .....+. .....-+-+.|.+++.+.+..
T Consensus 159 ~~~P~~~~~~wl~~~~~~g~~g~~~yr~l~f~~~G~l~~v~ 199 (236)
T 1tl2_A 159 ALPPVSNQDNWLARATKIGQGGWDTFKFLFFSSVGTLFGVQ 199 (236)
T ss_dssp ECCCSSTTCCHHHHCEEEESSSGGGEEEEEECTTSCEEEEE
T ss_pred cCCCCCCCcccccccceeccCCcceEEEEEECCCCcEEEEe
Confidence 3222110 0 0011111 222234557799999866555
No 323
>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A
Probab=96.67 E-value=0.24 Score=41.74 Aligned_cols=149 Identities=11% Similarity=0.107 Sum_probs=87.8
Q ss_pred EcCCCCEEEEEeCCCcEEEEEccCCeEEEEeecC----CCceEEEEeCCCCeEEEEcCCCeEEEEEcCCCCCCccc----
Q 047325 162 LDQDCGLLYTASWDRTFKVWRISDSKCLESVSAH----DDAVNSVVSSSEGLIFTGSADGTVKVWKREQHGKGTKH---- 233 (368)
Q Consensus 162 ~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~----~~~v~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~---- 233 (368)
...++..++.+- ++.||.-++.....-+.+... -..+..+..+|+|.+++-..+..|.|..+-.+......
T Consensus 28 ~~~n~t~i~~a~-~n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSpsG~lLAl~g~~~V~Vv~LP~~~~~~~~~~~~ 106 (452)
T 3pbp_A 28 SSQNGTRIVFIQ-DNIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISSTSGDLLCLFNDNEIFVMEVPWGYSNVEDVSIQ 106 (452)
T ss_dssp EETTTTEEEEEE-TTEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECTTSSEEEEECSSEEEEEECCTTCSCCCCHHHH
T ss_pred EEcCCCEEEEEE-CCEEEEEECCCCCcceEEecCcccccCceeEEEECCCCCEEEEecCCeEEEEEecCccccCcccccc
Confidence 345666666664 478888888744434444433 23578899999994444445668999988733211110
Q ss_pred --ccceeec------cccccEEEEEEcC---CCCEEEEecCCCcEEEEeCCCccccceeee------c---cceEEE--E
Q 047325 234 --SLAQTLL------KQECAVTALVVSS---SRSIVYCGSSDGLVNFWEREKQLSHGGVLK------G---HKLAVL--C 291 (368)
Q Consensus 234 --~~~~~~~------~~~~~i~~~~~~~---~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~------~---~~~~~~--~ 291 (368)
...+.+. ....+|..+.|+| .+..|++-..|+.|++||+.........+. + ....+. |
T Consensus 107 ~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~~L~k~~~~fg~d~~~~ev~S~~ 186 (452)
T 3pbp_A 107 DAFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKPIVLNKPNNSFGLDARVNDITDLE 186 (452)
T ss_dssp HTTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTSCCEEESCCCSEEESCSSCCCEEEEE
T ss_pred cccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCCCCcchhccccccCCCcccceEEEEE
Confidence 0011111 1256799999999 456899999999999999985221111111 1 112333 4
Q ss_pred EEeCCCEEEE--eeCCCeEEEE
Q 047325 292 LAAAGKLVFS--GSADKTICVW 311 (368)
Q Consensus 292 ~~~~~~~l~~--~~~dg~i~iw 311 (368)
|..++-.|+. .+..|.|+-.
T Consensus 187 Fg~~~lTLYvl~~t~~GDIYAl 208 (452)
T 3pbp_A 187 FSKDGLTLYCLNTTEGGDIFAF 208 (452)
T ss_dssp ECTTSSCEEEEECTTSCEEEEE
T ss_pred EcCCCcEEEEEecCCCCCEEEE
Confidence 4445555555 4477887654
No 324
>2xzh_A Clathrin heavy chain 1; endocytosis, endocytosis inhibition; HET: VH2; 1.69A {Homo sapiens} PDB: 2xzg_A* 3gc3_B 1utc_A 3gd1_I 1c9i_A 1c9l_A
Probab=96.64 E-value=0.2 Score=40.57 Aligned_cols=229 Identities=10% Similarity=0.112 Sum_probs=129.7
Q ss_pred EEEEccCCCcEEEEcCCcc--eecccCCCCCeeEEEEe-CCEEEEEeCCCeEEEEeecCCCccccccCCccccceeeeec
Q 047325 56 LLYTGSDSKNIRVWKNLKE--FCGFKASSGLVKAIVIS-GEKIFTGHQDGKIRVWKISPKNQSVHKRAGTLPTLKDIFKS 132 (368)
Q Consensus 56 ~l~s~~~dg~i~iw~~~~~--~~~~~~~~~~v~~~~~~-~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~ 132 (368)
.+|--. ..++.++|++.. +..+.- ...|.--.|- .+.|+-.+ +..|.-|+++............
T Consensus 80 ViALra-g~~LQiFnletK~klks~~~-~e~VvfWkWis~~~L~lVT-~taVyHWs~~~~s~P~kvFdR~---------- 146 (365)
T 2xzh_A 80 VIALKA-GKTLQIFNIEMKSKMKAHTM-TDDVTFWKWISLNTVALVT-DNAVYHWSMEGESQPVKMFDRH---------- 146 (365)
T ss_dssp EEEEEE-TTEEEEEETTTTEEEEEEEC-SSCEEEEEECSSSEEEEEE-SSEEEEEESSTTCCCEEEEECC----------
T ss_pred EEEEec-CCeEEEechHHhhhhcceec-CCccEEEEecCCCeEEEEc-CCcEEEEcccCCCCCceeeecc----------
Confidence 444333 578999998854 333333 3567777776 66666666 4589999997633211110000
Q ss_pred cCCCCceeEecccceeeeeecCCCEeEEEEcCCCCEEEEEeC-------CCcEEEEEccCCeEEEEeecCCCceEEEEeC
Q 047325 133 SIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCGLLYTASW-------DRTFKVWRISDSKCLESVSAHDDAVNSVVSS 205 (368)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-------d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~ 205 (368)
.. + ....|..-..+++.+.++..+- .|.+.+|..+. +.-+.+++|......+...
T Consensus 147 ------------~~---L--~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er-~~sQ~ieGhaa~F~~~~~~ 208 (365)
T 2xzh_A 147 ------------SS---L--AGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDR-KVSQPIEGHAASFAQFKME 208 (365)
T ss_dssp ------------GG---G--TTCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETTT-TEEEEECCSEEEEEEECCT
T ss_pred ------------hh---c--ccceEEEEEECCCCCEEEEEeEeccCCccceeEEEEeecc-cccceeeeeeeeeEEEecC
Confidence 00 0 1345666666777776555432 36788999765 4456677776655444433
Q ss_pred CCC---eEEE-EcC---CCeEEEEEcCCCCCC---cccccceeec---cccccEEEEEEcCCCCEEEEecCCCcEEEEeC
Q 047325 206 SEG---LIFT-GSA---DGTVKVWKREQHGKG---TKHSLAQTLL---KQECAVTALVVSSSRSIVYCGSSDGLVNFWER 272 (368)
Q Consensus 206 ~~~---~l~~-~~~---dg~i~i~d~~~~~~~---~~~~~~~~~~---~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~ 272 (368)
.+. .|++ +.. .+++++.++.....+ ...+....+. ...+-..++..++....+..-+.-|.+++||+
T Consensus 209 g~~~~~~lf~fa~r~~~g~kLhIiEi~~~~~~~~~f~kk~vdi~fppea~~DFPVamqvs~kygviyviTK~G~ihlyDl 288 (365)
T 2xzh_A 209 GNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDL 288 (365)
T ss_dssp TCSSCEEEEEEEEEETTEEEEEEEECSSCCTTCCCCCCEEEEECCCTTCTTCCEEEEEEETTTTEEEEEETTSEEEEEET
T ss_pred CCCCCceEEEEEEecCCCcEEEEEEcCCCCCCCCCcccccceeeCCccccCCceEEEEecccCCEEEEEeCCcEEEEEEc
Confidence 221 3333 222 368999998543111 1111111111 12455667888888888888899999999999
Q ss_pred CCcccccee-eeccceEEEEEEeCCCEEEEeeCCCeEEEEecCC
Q 047325 273 EKQLSHGGV-LKGHKLAVLCLAAAGKLVFSGSADKTICVWRRDG 315 (368)
Q Consensus 273 ~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~ 315 (368)
+++..+... +......+.+-..+..-++.-...|.|.--.++.
T Consensus 289 eTgt~i~~nrIS~d~iF~ta~~~~~~Gi~~Vnr~GqVl~v~v~~ 332 (365)
T 2xzh_A 289 ETGTCIYMNRISGETIFVTAPHEATAGIIGVNRKGQVLSVCVEE 332 (365)
T ss_dssp TTCCEEEEEECCSSCEEEEEEEGGGTEEEEEETTCEEEEEEECT
T ss_pred ccCcEEEEeccCCCceEEecccCCCCcEEEEcCCCEEEEEEECc
Confidence 998766322 2223333344333444455555777766655544
No 325
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=96.64 E-value=0.21 Score=40.71 Aligned_cols=150 Identities=13% Similarity=0.129 Sum_probs=73.8
Q ss_pred CCCEEEEEeCC-------CcEEEEEccCCeEEEEeecCCCc-eEEEEeCCCC-eEEEEcC------CCeEEEEEcCCCCC
Q 047325 165 DCGLLYTASWD-------RTFKVWRISDSKCLESVSAHDDA-VNSVVSSSEG-LIFTGSA------DGTVKVWKREQHGK 229 (368)
Q Consensus 165 ~~~~l~~~~~d-------~~i~iwd~~~~~~~~~~~~~~~~-v~~~~~~~~~-~l~~~~~------dg~i~i~d~~~~~~ 229 (368)
++..++.|+.+ ..+.+||+.+.+-...-...... -.+++. .++ .++.|+. -..+.+||+.+..
T Consensus 109 ~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~- 186 (318)
T 2woz_A 109 DDKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVKNLPIKVYGHNVIS-HNGMIYCLGGKTDDKKCTNRVFIYNPKKGD- 186 (318)
T ss_dssp TTEEEEEEEEBTTTCCEEEEEEEEETTTTEEEEECCCSSCEESCEEEE-ETTEEEEECCEESSSCBCCCEEEEETTTTE-
T ss_pred CCEEEEEcCccCCCCcccceEEEEeCCCCCEeECCCCCCcccccEEEE-ECCEEEEEcCCCCCCCccceEEEEcCCCCE-
Confidence 45667777653 25788898776533221111111 112222 244 5555553 2458899987542
Q ss_pred CcccccceeeccccccEEEEEEcCCCCEEEEecCC-----CcEEEEeCCCccccc-eeeeccceEEEEEEeCCCEEEEee
Q 047325 230 GTKHSLAQTLLKQECAVTALVVSSSRSIVYCGSSD-----GLVNFWEREKQLSHG-GVLKGHKLAVLCLAAAGKLVFSGS 303 (368)
Q Consensus 230 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d-----g~i~i~d~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~ 303 (368)
...............++.+ ++++++.|+.+ ..+.+||+.+..-.. ...........+...++++++.|+
T Consensus 187 ---W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~i~v~GG 261 (318)
T 2woz_A 187 ---WKDLAPMKTPRSMFGVAIH--KGKIVIAGGVTEDGLSASVEAFDLKTNKWEVMTEFPQERSSISLVSLAGSLYAIGG 261 (318)
T ss_dssp ---EEEECCCSSCCBSCEEEEE--TTEEEEEEEEETTEEEEEEEEEETTTCCEEECCCCSSCCBSCEEEEETTEEEEECC
T ss_pred ---EEECCCCCCCcccceEEEE--CCEEEEEcCcCCCCccceEEEEECCCCeEEECCCCCCcccceEEEEECCEEEEECC
Confidence 1111111111111222222 56777777643 347788887643211 111111111133445788888887
Q ss_pred CC--------------CeEEEEecCCCceeee
Q 047325 304 AD--------------KTICVWRRDGAIHTCL 321 (368)
Q Consensus 304 ~d--------------g~i~iw~~~~~~~~~~ 321 (368)
.+ ..+.+||+.+.....+
T Consensus 262 ~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~ 293 (318)
T 2woz_A 262 FAMIQLESKEFAPTEVNDIWKYEDDKKEWAGM 293 (318)
T ss_dssp BCCBC----CCBCCBCCCEEEEETTTTEEEEE
T ss_pred eeccCCCCceeccceeeeEEEEeCCCCEehhh
Confidence 64 3477888877655544
No 326
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=96.61 E-value=0.22 Score=40.55 Aligned_cols=154 Identities=10% Similarity=0.106 Sum_probs=77.1
Q ss_pred CCCCEEEEEeC----C-------CcEEEEEccCCeEEEE--eecCCCceEEEEeCCCCeEEEEcCC--------CeEEEE
Q 047325 164 QDCGLLYTASW----D-------RTFKVWRISDSKCLES--VSAHDDAVNSVVSSSEGLIFTGSAD--------GTVKVW 222 (368)
Q Consensus 164 ~~~~~l~~~~~----d-------~~i~iwd~~~~~~~~~--~~~~~~~v~~~~~~~~~~l~~~~~d--------g~i~i~ 222 (368)
.++..++.|+. + ..+..||+.+.+-... +...... .+++...+..++.|+.+ ..+.+|
T Consensus 44 ~~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~-~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~ 122 (315)
T 4asc_A 44 KENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWLGMPPLPSPRCL-FGLGEALNSIYVVGGREIKDGERCLDSVMCY 122 (315)
T ss_dssp TTCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEEEECCCBSSCEES-CEEEEETTEEEEECCEESSTTCCBCCCEEEE
T ss_pred ECCEEEEEcCcccCCCCCccccccceEEecCCCCeEEECCCCCcchhc-eeEEEECCEEEEEeCCcCCCCCcccceEEEE
Confidence 46677777773 1 1277889887653221 1111111 12222222355566632 458889
Q ss_pred EcCCCCCCcccccceeeccccccEEEEEEcCCCCEEEEecC-C-----CcEEEEeCCCccccc-eeeeccceEEEEEEeC
Q 047325 223 KREQHGKGTKHSLAQTLLKQECAVTALVVSSSRSIVYCGSS-D-----GLVNFWEREKQLSHG-GVLKGHKLAVLCLAAA 295 (368)
Q Consensus 223 d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-d-----g~i~i~d~~~~~~~~-~~~~~~~~~~~~~~~~ 295 (368)
|+.+.. ................+. -++++++.|+. + ..+.+||..+..-.. ...........+...+
T Consensus 123 d~~~~~----W~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~ 196 (315)
T 4asc_A 123 DRLSFK----WGESDPLPYVVYGHTVLS--HMDLVYVIGGKGSDRKCLNKMCVYDPKKFEWKELAPMQTARSLFGATVHD 196 (315)
T ss_dssp ETTTTE----EEECCCCSSCCBSCEEEE--ETTEEEEECCBCTTSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEET
T ss_pred CCCCCc----EeECCCCCCcccceeEEE--ECCEEEEEeCCCCCCcccceEEEEeCCCCeEEECCCCCCchhceEEEEEC
Confidence 987542 111111111112222222 25667777765 2 468899987643211 1111111111233457
Q ss_pred CCEEEEeeCCC-----eEEEEecCCCceeeeEee
Q 047325 296 GKLVFSGSADK-----TICVWRRDGAIHTCLSVL 324 (368)
Q Consensus 296 ~~~l~~~~~dg-----~i~iw~~~~~~~~~~~~~ 324 (368)
+++++.|+.++ .+.+||+.+.....+..+
T Consensus 197 ~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~ 230 (315)
T 4asc_A 197 GRIIVAAGVTDTGLTSSAEVYSITDNKWAPFEAF 230 (315)
T ss_dssp TEEEEEEEECSSSEEEEEEEEETTTTEEEEECCC
T ss_pred CEEEEEeccCCCCccceEEEEECCCCeEEECCCC
Confidence 88888887654 588888887766655443
No 327
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=96.51 E-value=0.25 Score=40.19 Aligned_cols=155 Identities=10% Similarity=0.071 Sum_probs=74.7
Q ss_pred cCCCCEEEEEeC----CC-------cEEEEEccCCeEEEE--eecCCCceEEEEeCCCCeEEEEcCC-------CeEEEE
Q 047325 163 DQDCGLLYTASW----DR-------TFKVWRISDSKCLES--VSAHDDAVNSVVSSSEGLIFTGSAD-------GTVKVW 222 (368)
Q Consensus 163 ~~~~~~l~~~~~----d~-------~i~iwd~~~~~~~~~--~~~~~~~v~~~~~~~~~~l~~~~~d-------g~i~i~ 222 (368)
..++..++.|+. ++ .+..||..+.+-... +...... .+++...+..++.|+.+ ..+.+|
T Consensus 54 ~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~-~~~~~~~~~iyv~GG~~~~~~~~~~~~~~y 132 (318)
T 2woz_A 54 TQQNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVGLPPLPSARCL-FGLGEVDDKIYVVAGKDLQTEASLDSVLCY 132 (318)
T ss_dssp CSSSCEEEEESSCC-------CCCBEEEEEETTTTEEEECSCBSSCBCS-CEEEEETTEEEEEEEEBTTTCCEEEEEEEE
T ss_pred EECCEEEEECCcccCccccCCCccccEEEEeCCCCcEEECCCCCccccc-cceEEECCEEEEEcCccCCCCcccceEEEE
Confidence 346677777773 11 177888877653322 1111111 12222223355555543 357788
Q ss_pred EcCCCCCCcccccceeeccccccEEEEEEcCCCCEEEEecC------CCcEEEEeCCCccccce-eeeccceEEEEEEeC
Q 047325 223 KREQHGKGTKHSLAQTLLKQECAVTALVVSSSRSIVYCGSS------DGLVNFWEREKQLSHGG-VLKGHKLAVLCLAAA 295 (368)
Q Consensus 223 d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~------dg~i~i~d~~~~~~~~~-~~~~~~~~~~~~~~~ 295 (368)
|+.+.. ................+. .++++++.|+. -..+.+||+.+..-... ..........+...+
T Consensus 133 d~~~~~----W~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~ 206 (318)
T 2woz_A 133 DPVAAK----WSEVKNLPIKVYGHNVIS--HNGMIYCLGGKTDDKKCTNRVFIYNPKKGDWKDLAPMKTPRSMFGVAIHK 206 (318)
T ss_dssp ETTTTE----EEEECCCSSCEESCEEEE--ETTEEEEECCEESSSCBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEET
T ss_pred eCCCCC----EeECCCCCCcccccEEEE--ECCEEEEEcCCCCCCCccceEEEEcCCCCEEEECCCCCCCcccceEEEEC
Confidence 886542 111111111111111222 35667777764 23589999876432111 111111111223357
Q ss_pred CCEEEEeeCC-----CeEEEEecCCCceeeeEee
Q 047325 296 GKLVFSGSAD-----KTICVWRRDGAIHTCLSVL 324 (368)
Q Consensus 296 ~~~l~~~~~d-----g~i~iw~~~~~~~~~~~~~ 324 (368)
+++++.|+.+ ..+.+||+.+.....+..+
T Consensus 207 ~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~ 240 (318)
T 2woz_A 207 GKIVIAGGVTEDGLSASVEAFDLKTNKWEVMTEF 240 (318)
T ss_dssp TEEEEEEEEETTEEEEEEEEEETTTCCEEECCCC
T ss_pred CEEEEEcCcCCCCccceEEEEECCCCeEEECCCC
Confidence 7888888753 3577888887766555443
No 328
>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*
Probab=96.51 E-value=0.29 Score=40.69 Aligned_cols=107 Identities=5% Similarity=-0.039 Sum_probs=61.9
Q ss_pred CCCEeEEEEcCCCCEEEEEeCCCcEEEEEccCCe-EEEEee---cCCCceEEEEeCCC----CeEEEEcC----C----C
Q 047325 154 SDAVSCMSLDQDCGLLYTASWDRTFKVWRISDSK-CLESVS---AHDDAVNSVVSSSE----GLIFTGSA----D----G 217 (368)
Q Consensus 154 ~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~-~~~~~~---~~~~~v~~~~~~~~----~~l~~~~~----d----g 217 (368)
-.....++|.|+++ |+++..+|.|+++| .+++ .+..+. ........++++|+ +.|+++.. + .
T Consensus 28 l~~P~~ia~~pdG~-l~V~e~~g~I~~~d-~~G~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~~~ 105 (354)
T 3a9g_A 28 LEVPWSIAPLGGGR-YLVTERPGRLVLIS-PSGKKLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGHIRN 105 (354)
T ss_dssp CSCEEEEEEEETTE-EEEEETTTEEEEEC-SSCEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGGCEEE
T ss_pred CCCCeEEEEcCCCe-EEEEeCCCEEEEEe-CCCceEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCCCcce
Confidence 34568899999987 55556779999997 4554 222221 12346789999997 55544433 3 5
Q ss_pred eEEEEEcCCCCCC-cccc-cceeec-cccccEEEEEEcCCCCEEEEec
Q 047325 218 TVKVWKREQHGKG-TKHS-LAQTLL-KQECAVTALVVSSSRSIVYCGS 262 (368)
Q Consensus 218 ~i~i~d~~~~~~~-~~~~-~~~~~~-~~~~~i~~~~~~~~~~~l~~~~ 262 (368)
.|..++....... .... ....+. ........++|.|+|.+.++.+
T Consensus 106 ~v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~Lyvt~G 153 (354)
T 3a9g_A 106 RVIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGMLYITTG 153 (354)
T ss_dssp EEEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSCEEEECC
T ss_pred EEEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCcEEEEEC
Confidence 6777776543110 0011 111111 1112246789999998766643
No 329
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=96.49 E-value=0.29 Score=40.54 Aligned_cols=110 Identities=12% Similarity=0.067 Sum_probs=65.5
Q ss_pred CCEeEEEEcCCCCEEEEEe-----------------CCCcEEEEEccCCeEEEEeecCCCceEEEEeCCCC-e-EEEEcC
Q 047325 155 DAVSCMSLDQDCGLLYTAS-----------------WDRTFKVWRISDSKCLESVSAHDDAVNSVVSSSEG-L-IFTGSA 215 (368)
Q Consensus 155 ~~v~~~~~~~~~~~l~~~~-----------------~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~-l~~~~~ 215 (368)
...+.+.+.++|.+.++.. ..|.|.-+|. ++.. .+...-...+.++|+|++ . +++-+.
T Consensus 165 ~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d~--~~~~-~~~~~l~~pNGia~spDg~~lYvadt~ 241 (355)
T 3sre_A 165 PSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSP--NDVR-VVAEGFDFANGINISPDGKYVYIAELL 241 (355)
T ss_dssp SSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEEECT--TCCE-EEEEEESSEEEEEECTTSSEEEEEEGG
T ss_pred CCCceEEEeCCCCEEecCCcEeCCcccccchhhccCCccEEEEEEC--CeEE-EeecCCcccCcceECCCCCEEEEEeCC
Confidence 4578899999887666653 1244555554 3322 222223456899999999 4 445556
Q ss_pred CCeEEEEEcCCCCCCcccccceeeccccccEEEEEEcC-CCCEEEEecCC-CcEEEEe
Q 047325 216 DGTVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSS-SRSIVYCGSSD-GLVNFWE 271 (368)
Q Consensus 216 dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~d-g~i~i~d 271 (368)
.+.|..|++...+... ....+ ...+..-.+++.+ +|++.+++..+ +.|..|+
T Consensus 242 ~~~I~~~~~~~~g~l~---~~~~~-~~~g~PDGi~vD~e~G~lwva~~~~g~~v~~~~ 295 (355)
T 3sre_A 242 AHKIHVYEKHANWTLT---PLRVL-SFDTLVDNISVDPVTGDLWVGCHPNGMRIFFYD 295 (355)
T ss_dssp GTEEEEEEECTTSCEE---EEEEE-ECSSEEEEEEECTTTCCEEEEEESCHHHHHSCC
T ss_pred CCeEEEEEECCCCcEe---cCEEE-eCCCCCceEEEeCCCCcEEEEecCCceEEEEEC
Confidence 8899999997432211 11122 2245677888888 58877655433 3444443
No 330
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=96.45 E-value=0.31 Score=40.44 Aligned_cols=104 Identities=11% Similarity=-0.031 Sum_probs=48.0
Q ss_pred CeEEEEEcCCCCCCcccccceeeccccccEEEEEEcCCCCEEEEecC------CCcEEEEeC--CCcccc-ceeeeccc-
Q 047325 217 GTVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSSSRSIVYCGSS------DGLVNFWER--EKQLSH-GGVLKGHK- 286 (368)
Q Consensus 217 g~i~i~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~------dg~i~i~d~--~~~~~~-~~~~~~~~- 286 (368)
..+.+||+.+.. .............-.+++.. ++++++.|+. ...+..||+ .+..-. ........
T Consensus 168 ~~v~~yd~~~~~----W~~~~~~p~~~~~~~~~~~~-~~~iyv~GG~~~~~~~~~~v~~~d~d~~~~~W~~~~~~~~~~~ 242 (357)
T 2uvk_A 168 KFLLSFDPSTQQ----WSYAGESPWYGTAGAAVVNK-GDKTWLINGEAKPGLRTDAVFELDFTGNNLKWNKLAPVSSPDG 242 (357)
T ss_dssp CEEEEEETTTTE----EEEEEECSSCCCBSCEEEEE-TTEEEEECCEEETTEECCCEEEEECC---CEEEECCCSSTTTC
T ss_pred ccEEEEeCCCCc----EEECCCCCCCCcccccEEEE-CCEEEEEeeecCCCcccCceEEEEecCCCCcEEecCCCCCCcc
Confidence 578899987542 11111111111110122222 5566677653 345777876 332111 01111111
Q ss_pred -eEEEEEEeCCCEEEEeeCC----------------------CeEEEEecCCCceeeeEeee
Q 047325 287 -LAVLCLAAAGKLVFSGSAD----------------------KTICVWRRDGAIHTCLSVLT 325 (368)
Q Consensus 287 -~~~~~~~~~~~~l~~~~~d----------------------g~i~iw~~~~~~~~~~~~~~ 325 (368)
....+...++++++.|+.+ ..+.+||+.+.....+..+.
T Consensus 243 ~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~g~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p 304 (357)
T 2uvk_A 243 VAGGFAGISNDSLIFAGGAGFKGSRENYQNGKNYAHEGLKKSYSTDIHLWHNGKWDKSGELS 304 (357)
T ss_dssp CBSCEEEEETTEEEEECCEECTTHHHHHHTTCSSTTTTCCCEECCEEEECC---CEEEEECS
T ss_pred cccceEEEECCEEEEEcCccccCCcccccccceeccccccceeeEEEEecCCCceeeCCCCC
Confidence 1112445678888888742 25778998877666665544
No 331
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=96.40 E-value=0.37 Score=40.79 Aligned_cols=195 Identities=12% Similarity=0.201 Sum_probs=116.1
Q ss_pred CCeEEEEeecCCCccccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcCCCCEEEEEeCCCcEEE
Q 047325 101 DGKIRVWKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCGLLYTASWDRTFKV 180 (368)
Q Consensus 101 dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i 180 (368)
..++.|+|+++........ ....|.-=.|-.+ +.|+-.+ +..|+-
T Consensus 85 g~~lQiFnle~K~klks~~---------------------------------~~e~VvfWkWis~-~~l~lVT-~taVyH 129 (494)
T 1bpo_A 85 GKTLQIFNIEMKSKMKAHT---------------------------------MTDDVTFWKWISL-NTVALVT-DNAVYH 129 (494)
T ss_dssp TTEEEEEETTTTEEEEEEE---------------------------------CSSCCCEEEEEET-TEEEEEC-SSEEEE
T ss_pred CCeEEEEchHHhhhhccee---------------------------------cCCCceEEEecCC-CeEEEEc-CCeeEE
Confidence 6799999999876544332 2345555566544 3555554 468999
Q ss_pred EEccC-CeEEEEeecCC----CceEEEEeCCCC--eEEEEc------CCCeEEEEEcCCCCCCcccccceeeccccccEE
Q 047325 181 WRISD-SKCLESVSAHD----DAVNSVVSSSEG--LIFTGS------ADGTVKVWKREQHGKGTKHSLAQTLLKQECAVT 247 (368)
Q Consensus 181 wd~~~-~~~~~~~~~~~----~~v~~~~~~~~~--~l~~~~------~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~i~ 247 (368)
|++.. ..+.+.+..|. ..|..-..+++. .+++|- -.|.+.+|..+.. ..+.+.+|.....
T Consensus 130 Wsi~~~s~P~kvFdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~-------~sQ~ieGhaa~F~ 202 (494)
T 1bpo_A 130 WSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRK-------VSQPIEGHAASFA 202 (494)
T ss_dssp EESSSSCCCEEEEECCGGGTTCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEESTTC-------CEEEECCSEEEEE
T ss_pred ecccCCCCchhheecchhcccceEEEEEECCCCCeEEEEeecccCCcccceEEEeecccc-------ccchheeeeeeeE
Confidence 99964 35666666553 456666777777 444442 2467889988754 4566777776655
Q ss_pred EEEEcCCC---CEEEEecC---CCcEEEEeCCCc---ccc--c---eeee----ccceEE-EEEEeCCCEEEEeeCCCeE
Q 047325 248 ALVVSSSR---SIVYCGSS---DGLVNFWEREKQ---LSH--G---GVLK----GHKLAV-LCLAAAGKLVFSGSADKTI 308 (368)
Q Consensus 248 ~~~~~~~~---~~l~~~~~---dg~i~i~d~~~~---~~~--~---~~~~----~~~~~~-~~~~~~~~~l~~~~~dg~i 308 (368)
.+....+. +.++.+.. .+.+++.++... ... . .... ...-++ +.+++....++.-+.-|.|
T Consensus 203 ~~~~~g~~~~~~lf~fa~r~~~g~kLhi~Ei~~~~~~~~~f~kk~vdv~fppe~~~DFPvamqvs~kygviyviTK~G~i 282 (494)
T 1bpo_A 203 QFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYI 282 (494)
T ss_dssp EEECTTCSSEEEEEEEEECSTTCCEEEEEECSCCCTTCCCCCCEEEECCCCTTSTTCCEEEEEEETTTTEEEEEETTSEE
T ss_pred EEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCccCCCCccceeeeeeCCcccccCceeEEEecccCCEEEEEecCceE
Confidence 55443221 23333333 278999998543 100 0 0000 012222 4556667788888999999
Q ss_pred EEEecCCCceeeeEeeeccccCeeEEEEecC
Q 047325 309 CVWRRDGAIHTCLSVLTGHTGPVKCLAVEED 339 (368)
Q Consensus 309 ~iw~~~~~~~~~~~~~~~h~~~v~~l~~~~~ 339 (368)
++||++++ .++..-+-..++|-.-+...+
T Consensus 283 ~lyDleTg--t~i~~nrIs~~~iF~t~~~~~ 311 (494)
T 1bpo_A 283 HLYDLETG--TCIYMNRISGETIFVTAPHEA 311 (494)
T ss_dssp EEEETTTC--CEEEEEECCSSCEEEEEEETT
T ss_pred EEEecccc--eeeeeecccCCceEEecccCC
Confidence 99999988 455544444555544444333
No 332
>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*
Probab=96.31 E-value=0.38 Score=39.97 Aligned_cols=233 Identities=10% Similarity=0.057 Sum_probs=113.8
Q ss_pred CeeEEEEe-CCEEEEEeCCCeEEEEeecCCCccccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEE
Q 047325 84 LVKAIVIS-GEKIFTGHQDGKIRVWKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSL 162 (368)
Q Consensus 84 ~v~~~~~~-~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 162 (368)
....++|. ...|+.+..+|.|++++. ++. ....... ++.........+++
T Consensus 30 ~P~~ia~~pdG~l~V~e~~g~I~~~d~-~G~-~~~~~~~---------------------------v~~~g~~g~~gia~ 80 (354)
T 3a9g_A 30 VPWSIAPLGGGRYLVTERPGRLVLISP-SGK-KLVASFD---------------------------VANVGEAGLLGLAL 80 (354)
T ss_dssp CEEEEEEEETTEEEEEETTTEEEEECS-SCE-EEEEECC---------------------------CCCSTTCSEEEEEE
T ss_pred CCeEEEEcCCCeEEEEeCCCEEEEEeC-CCc-eEeeccc---------------------------eeecCCCceeeEEe
Confidence 35677776 445777777888888863 222 1000000 00002345788999
Q ss_pred cCC---CCEEEEEeC----C----CcEEEEEccCC-------eEE-EEeec-CCCceEEEEeCCCCeEEEEcC-------
Q 047325 163 DQD---CGLLYTASW----D----RTFKVWRISDS-------KCL-ESVSA-HDDAVNSVVSSSEGLIFTGSA------- 215 (368)
Q Consensus 163 ~~~---~~~l~~~~~----d----~~i~iwd~~~~-------~~~-~~~~~-~~~~v~~~~~~~~~~l~~~~~------- 215 (368)
+|+ +..|+++.. + ..|..++.... +.+ ..+.. .......++|.|+|.|+.+..
T Consensus 81 ~pdf~~~g~lyv~~~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~Lyvt~G~~~~~~~ 160 (354)
T 3a9g_A 81 HPEFPKKSWVYLYASYFAEGGHIRNRVIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGMLYITTGDAADPRL 160 (354)
T ss_dssp CTTTTTSCEEEEEEEEECGGGCEEEEEEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSCEEEECCCTTCGGG
T ss_pred CCCCCcCCEEEEEEeccCCCCCcceEEEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCcEEEEECCCCCCcc
Confidence 997 555555543 2 56777776543 111 11221 112346789999994444322
Q ss_pred -------CCeEEEEEcCCCCCCccc--ccceeeccccccEEEEEEcC-CCCEEEEecCCC---cEEEEeCCCc-------
Q 047325 216 -------DGTVKVWKREQHGKGTKH--SLAQTLLKQECAVTALVVSS-SRSIVYCGSSDG---LVNFWEREKQ------- 275 (368)
Q Consensus 216 -------dg~i~i~d~~~~~~~~~~--~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg---~i~i~d~~~~------- 275 (368)
.|.|.-++....-..... .......++ .....++|+| ++++.++-...+ .|.+......
T Consensus 161 ~~d~~~~~G~I~ri~~dG~~p~~npf~~~~i~a~G~-rnp~Gla~d~~~g~l~v~d~g~~~~dei~~i~~G~nyGwp~~~ 239 (354)
T 3a9g_A 161 AQDLSSLAGKILRVDEEGRPPADNPFPNSPIWSYGH-RNPQGIDWHRASGVMVATEHGPVGHDEVNIILKGGNYGWPLAT 239 (354)
T ss_dssp GTCTTCCSSEEEEECTTSCCCTTSSSTTCCEEEECC-SCCCEEEECTTTCCEEEEECCSSSCCEEEEECTTCBCCTTTCC
T ss_pred ccCCCCCCeEEEEEcCCCCCCCCCCCCCCcEEEEcc-CCcceEEEeCCCCCEEEEecCCCCCcEEEEecCCCcCCCCccc
Confidence 245655555321000000 001111122 2345789999 566555433221 2433321110
Q ss_pred --------cccceee-eccceEE-EEE-------EeCCCEEEEeeCCCeEEEEecCCCc-eeeeEee-eccccCeeEEEE
Q 047325 276 --------LSHGGVL-KGHKLAV-LCL-------AAAGKLVFSGSADKTICVWRRDGAI-HTCLSVL-TGHTGPVKCLAV 336 (368)
Q Consensus 276 --------~~~~~~~-~~~~~~~-~~~-------~~~~~~l~~~~~dg~i~iw~~~~~~-~~~~~~~-~~h~~~v~~l~~ 336 (368)
..+...+ ..+..+. +.+ .+++.++++.-..+.|...+++... ......+ .+-...+.++++
T Consensus 240 g~~~~~~~~~p~~~~~~~~~ap~G~~~y~g~~fp~~~G~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~~rp~~v~~ 319 (354)
T 3a9g_A 240 GKAGRGEFVDPVIDTGSETWAPSGASFVHGDMFPGLRGWLLIACLRGSMLAAVNFGDNMEVRKISTFFKNVFGRLRDVVI 319 (354)
T ss_dssp SCCCCTTSCCCSEECTTCCCCEEEEEECCSSSCGGGTTEEEEEETTTTEEEEEEECGGGCEEEEEEECTTTSCCEEEEEE
T ss_pred CCCCCCCCcCCEeecCCCCcCCcceEEECCCCCcccCCcEEEEEcCCCEEEEEEECCCCcccceeeeccCCCCCeeEEEE
Confidence 0111111 1222222 333 1457777776677888888876431 1111222 222457899999
Q ss_pred ecCCeeeecC
Q 047325 337 EEDRDSSSST 346 (368)
Q Consensus 337 ~~~~~~~~~~ 346 (368)
.|||.+.++.
T Consensus 320 ~pDG~lyv~~ 329 (354)
T 3a9g_A 320 DDDGGILIST 329 (354)
T ss_dssp CTTSCEEEEE
T ss_pred CCCCcEEEEE
Confidence 9999754443
No 333
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B
Probab=96.17 E-value=0.37 Score=38.50 Aligned_cols=240 Identities=13% Similarity=0.132 Sum_probs=128.3
Q ss_pred cEEEEEecCCEEEEccCCCcEEEEcCCc--ceecccCCCCCeeEEEEeCCEEEEEeCCCeEEEEeecCCCccccccCCcc
Q 047325 46 HIYSLAASKDLLYTGSDSKNIRVWKNLK--EFCGFKASSGLVKAIVISGEKIFTGHQDGKIRVWKISPKNQSVHKRAGTL 123 (368)
Q Consensus 46 ~i~~~~~~~~~l~s~~~dg~i~iw~~~~--~~~~~~~~~~~v~~~~~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~ 123 (368)
.|..++......+.-. ||.|..|-... ++-........|..++......+.-. ||.|..|-.....+.-....
T Consensus 25 ~i~~ia~G~~h~~~l~-~G~v~~wG~n~~Gqlg~p~~~~~~i~~ia~G~~hs~~l~-~G~v~~wG~n~~Gqlg~P~~--- 99 (282)
T 3qhy_B 25 GVDAIAGGYFHGLALK-GGKVLGWGANLNGQLTMPAATQSGVDAIAAGNYHSLALK-DGEVIAWGGNEDGQTTVPAE--- 99 (282)
T ss_dssp SCCEEEECSSEEEEEE-TTEEEEEECCSSSTTSCCGGGGSCCCEEEECSSEEEEEE-TTEEEEEECCTTSTTCCCGG---
T ss_pred CCcEEEeCCCeEEEEE-CCEEEEEeCCCCCCCCCCccCCCCEEEEEeCCCEEEEEE-CCEEEEeeCCCCCCCCCCcc---
Confidence 5777777666333334 89999995432 11111112336777777655444445 99999998765432211000
Q ss_pred ccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcCCCCEEEEEeCCCcEEEEEccCCeEEEEeecCCCceEEEE
Q 047325 124 PTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCGLLYTASWDRTFKVWRISDSKCLESVSAHDDAVNSVV 203 (368)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~ 203 (368)
-...|..++...+ ..+.-. ||.|..|-....-.+..-......|..++
T Consensus 100 -----------------------------~~~~v~~ia~G~~--hs~al~-~G~v~~wG~n~~gqlg~~~~~~~~i~~i~ 147 (282)
T 3qhy_B 100 -----------------------------ARSGVDAIAAGAW--ASYALK-DGKVIAWGDDSDGQTTVPAEAQSGVTALD 147 (282)
T ss_dssp -----------------------------GSSSEEEEEEETT--EEEEEE-TTEEEEEECCTTSTTSCCGGGGSSEEEEE
T ss_pred -----------------------------cCCCeEEEECcCC--EEEEEe-CCeEEEecCCCCCcCCCCccCCCCeEEEE
Confidence 1235667766544 333344 89999997644221111111234577777
Q ss_pred eCCCCeEEEEcCCCeEEEEEcCCCCCCcccccceeeccccccEEEEEEcCCCCEEEEecCCCcEEEEeCCCccccceeee
Q 047325 204 SSSEGLIFTGSADGTVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSSSRSIVYCGSSDGLVNFWEREKQLSHGGVLK 283 (368)
Q Consensus 204 ~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~ 283 (368)
......++.. ||.|+.|-.....+.... ......|..++...+.. ++. .||.|+.|-....-.+. ...
T Consensus 148 ~G~~~~~~l~--~G~v~~wG~n~~gqlg~p------~~~~~~v~~i~~G~~hs-~al--~~G~v~~wG~n~~gqlg-~p~ 215 (282)
T 3qhy_B 148 GGVYTALAVK--NGGVIAWGDNYFGQTTVP------AEAQSGVDDVAGGIFHS-LAL--KDGKVIAWGDNRYKQTT-VPT 215 (282)
T ss_dssp ECSSEEEEEE--TTEEEEEECCTTSTTSCC------GGGGSSEEEEEECSSEE-EEE--ETTEEEEEECCTTSTTC-CCG
T ss_pred cccCEEEEEE--CCEEEEecCCCCCCCCCc------eecCCCeEEEEecCCEE-EEE--ECCeEEEEECCCCCCCC-CCc
Confidence 6655544433 799999987654332111 11134577777654433 333 59999999765432221 111
Q ss_pred ccceEEEEEEeCCCEEEEeeCCCeEEEEecCCCceeeeEeeeccccCeeEEEEecCCe
Q 047325 284 GHKLAVLCLAAAGKLVFSGSADKTICVWRRDGAIHTCLSVLTGHTGPVKCLAVEEDRD 341 (368)
Q Consensus 284 ~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~ 341 (368)
.....+..++......++-. ||.|+.|-.... .++. -...|.+|+-.....
T Consensus 216 ~~~~~v~~i~~G~~h~~al~-~g~v~~wG~n~~--gq~~----v~~~v~~iaaG~~h~ 266 (282)
T 3qhy_B 216 EALSGVSAIASGEWYSLALK-NGKVIAWGSSRT--APSS----VQSGVSSIEAGPNAA 266 (282)
T ss_dssp GGGSSCCEEEECSSCEEEEE-TTEEEEESTTCC--CCGG----GSSCEEEEEECSSCE
T ss_pred ccCCCceEEEcCCCEEEEEE-CCEEEEecCCCC--cccc----CCCCcEEEEECcCeE
Confidence 11223556665444444444 999999954432 1111 123577777666555
No 334
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=96.15 E-value=0.64 Score=45.70 Aligned_cols=175 Identities=11% Similarity=0.198 Sum_probs=99.2
Q ss_pred CCCeEEEEeecCCCccccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcCCCCEEEEEeCCCcEE
Q 047325 100 QDGKIRVWKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCGLLYTASWDRTFK 179 (368)
Q Consensus 100 ~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~ 179 (368)
...++.|+|+++........ ....|.-=.|-.+. .|+-.+ +..|.
T Consensus 84 ag~~lQiFnl~~k~klks~~---------------------------------~~e~VvfWkWis~~-~l~lVT-~~aVy 128 (1630)
T 1xi4_A 84 AGKTLQIFNIEMKSKMKAHT---------------------------------MTDDVTFWKWISLN-TVALVT-DNAVY 128 (1630)
T ss_pred cCCeEEEeehHHhhhhcccc---------------------------------cCCCceEEEecCCC-eeEEEc-CCeEE
Confidence 36799999999887554433 23455556665443 444444 36799
Q ss_pred EEEccC-CeEEEEeecC----CCceEEEEeCCCC--eEEEEc------CCCeEEEEEcCCCCCCcccccceeeccccccE
Q 047325 180 VWRISD-SKCLESVSAH----DDAVNSVVSSSEG--LIFTGS------ADGTVKVWKREQHGKGTKHSLAQTLLKQECAV 246 (368)
Q Consensus 180 iwd~~~-~~~~~~~~~~----~~~v~~~~~~~~~--~l~~~~------~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~i 246 (368)
.|++.. ..+...+..| ...|..-..+++. .+++|- -.|.+.+|..+.. ..+.+.+|.+..
T Consensus 129 HW~~~~~s~P~k~fdR~~~L~~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~er~-------~sQ~iegha~~F 201 (1630)
T 1xi4_A 129 HWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRK-------VSQPIEGHAASF 201 (1630)
T ss_pred EeccCCCCccHHHHhcchhcccCeeEEeeeCCCCCeEEEEeeccCCCcccceeeeeecccc-------cchhhhHhHhhh
Confidence 999963 3455555444 3456666667777 344442 3578888888654 334455555444
Q ss_pred EEEEEc--CC-CCEEEEec---CCCcEEEEeCCCc---ccc-----ceeeec----cceEE-EEEEeCCCEEEEeeCCCe
Q 047325 247 TALVVS--SS-RSIVYCGS---SDGLVNFWEREKQ---LSH-----GGVLKG----HKLAV-LCLAAAGKLVFSGSADKT 307 (368)
Q Consensus 247 ~~~~~~--~~-~~~l~~~~---~dg~i~i~d~~~~---~~~-----~~~~~~----~~~~~-~~~~~~~~~l~~~~~dg~ 307 (368)
..+... +. .+.++.+. ..+.++|-++... ... ...... ..-++ +.+++....++.-+.-|.
T Consensus 202 ~~~~~~~~~~~~~l~~f~~~~~~g~kLhi~Ei~~~~~~~~~f~kk~~~~~~~~~~~~Dfpv~~~vs~k~g~iy~itk~G~ 281 (1630)
T 1xi4_A 202 AQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGY 281 (1630)
T ss_pred heeccCCCCCCceEEEEEEecCCCceEEEEecCCCccCCCCCccccccccCCcccccCcceEEEeccccCEEEEEecCce
Confidence 333332 11 12222221 1268888887543 000 001111 11112 445556677888889999
Q ss_pred EEEEecCCC
Q 047325 308 ICVWRRDGA 316 (368)
Q Consensus 308 i~iw~~~~~ 316 (368)
|++||+.++
T Consensus 282 ~~~~d~~t~ 290 (1630)
T 1xi4_A 282 IHLYDLETG 290 (1630)
T ss_pred EEEEecccc
Confidence 999999887
No 335
>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}
Probab=96.08 E-value=0.48 Score=39.04 Aligned_cols=152 Identities=15% Similarity=0.111 Sum_probs=83.4
Q ss_pred eecCCCceEEEEeCCCCeEEEEcC-CCeEEEEEcCCCCCCcccc-cceeeccccccEEEEEEcCC---CCEEEEe---cC
Q 047325 192 VSAHDDAVNSVVSSSEGLIFTGSA-DGTVKVWKREQHGKGTKHS-LAQTLLKQECAVTALVVSSS---RSIVYCG---SS 263 (368)
Q Consensus 192 ~~~~~~~v~~~~~~~~~~l~~~~~-dg~i~i~d~~~~~~~~~~~-~~~~~~~~~~~i~~~~~~~~---~~~l~~~---~~ 263 (368)
+...-.....+++.|+|.++++.. .|.|++++...... .... ..............++++|+ ...|... ..
T Consensus 27 va~gL~~P~~ia~~pdG~llVter~~G~I~~v~~~~g~~-~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~~~ 105 (347)
T 3das_A 27 VATGLNSPWGLAPLPGGDLLVSSRDEATITRVDAKTGRK-TELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFTSAS 105 (347)
T ss_dssp EECCCSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCE-EEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEECSS
T ss_pred eecCCCCceEEEEcCCCcEEEEEecCCEEEEEECCCCcE-eeecccCceeecCCCCceeeEeccccccCCEEEEEEecCC
Confidence 333345668999999995555555 89999997653321 0000 00112234567899999995 3444432 24
Q ss_pred CCcEEEEeCCCcc----------ccceee---eccceEEEEEEeCCCEEEEeeC-------------CCeEEEEecCCCc
Q 047325 264 DGLVNFWEREKQL----------SHGGVL---KGHKLAVLCLAAAGKLVFSGSA-------------DKTICVWRRDGAI 317 (368)
Q Consensus 264 dg~i~i~d~~~~~----------~~~~~~---~~~~~~~~~~~~~~~~l~~~~~-------------dg~i~iw~~~~~~ 317 (368)
++.|.-|.+.... .+...+ ..|...-+.|.+||.+.++.+. -|.|.-.+.+...
T Consensus 106 ~~~v~R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG~Lyvt~Gd~~~~~~~qd~~~~~G~IlRi~~dG~i 185 (347)
T 3das_A 106 DNRIVRMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDKMLYAGTGESGDTGLSQDRKSLGGKILRMTPDGEP 185 (347)
T ss_dssp SEEEEEEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTSCEEEECBCTTCGGGTTCTTCSTTCEEEECTTSSB
T ss_pred CCEEEEEEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCCCCCEEEEECCCCCCccccCCCCCCCEEEEEeCCCCc
Confidence 4556666654311 111111 2466666888899987777542 2444444443220
Q ss_pred -------eeeeEeeeccccCeeEEEEecCCeeeecC
Q 047325 318 -------HTCLSVLTGHTGPVKCLAVEEDRDSSSST 346 (368)
Q Consensus 318 -------~~~~~~~~~h~~~v~~l~~~~~~~~~~~~ 346 (368)
...+.. .+|.+ ...++|+|+|.+.++-
T Consensus 186 p~~nPf~~~~i~a-~G~RN-p~Gla~dp~G~L~~~d 219 (347)
T 3das_A 186 APGNPFPGSPVYS-YGHRN-VQGLAWDDKQRLFASE 219 (347)
T ss_dssp CTTCSSTTCCEEE-BCCSB-CCEEEECTTCCEEEEE
T ss_pred cCCCCCCCCeEEe-eCCCC-cceEEECCCCCEEEEe
Confidence 011222 24544 4689999988765543
No 336
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=96.04 E-value=0.58 Score=39.63 Aligned_cols=223 Identities=10% Similarity=0.105 Sum_probs=129.5
Q ss_pred CCcEEEEcCCcc--eecccCCCCCeeEEEEe-CCEEEEEeCCCeEEEEeecCCCccccccCCccccceeeeeccCCCCce
Q 047325 63 SKNIRVWKNLKE--FCGFKASSGLVKAIVIS-GEKIFTGHQDGKIRVWKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNY 139 (368)
Q Consensus 63 dg~i~iw~~~~~--~~~~~~~~~~v~~~~~~-~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (368)
..++.|+|++.. +..+.- ...|.-..|- .+.|+-.+ +..|.-|+++............
T Consensus 85 g~~lQiFnle~K~klks~~~-~e~VvfWkWis~~~l~lVT-~taVyHWsi~~~s~P~kvFdR~----------------- 145 (494)
T 1bpo_A 85 GKTLQIFNIEMKSKMKAHTM-TDDVTFWKWISLNTVALVT-DNAVYHWSMEGESQPVKMFDRH----------------- 145 (494)
T ss_dssp TTEEEEEETTTTEEEEEEEC-SSCCCEEEEEETTEEEEEC-SSEEEEEESSSSCCCEEEEECC-----------------
T ss_pred CCeEEEEchHHhhhhcceec-CCCceEEEecCCCeEEEEc-CCeeEEecccCCCCchhheecc-----------------
Confidence 578999998743 444443 3457677776 67776666 5589999997533211110000
Q ss_pred eEecccceeeeeecCCCEeEEEEcCCCCEEEEEeC-------CCcEEEEEccCCeEEEEeecCCCceEEEEeCCCC----
Q 047325 140 IEVRRHRTALWIRHSDAVSCMSLDQDCGLLYTASW-------DRTFKVWRISDSKCLESVSAHDDAVNSVVSSSEG---- 208 (368)
Q Consensus 140 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-------d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~---- 208 (368)
.. + ....|..-..+++.+.++..+- .|.+.+|..+. +.-+.+++|......+....+.
T Consensus 146 -----~~---L--~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er-~~sQ~ieGhaa~F~~~~~~g~~~~~~ 214 (494)
T 1bpo_A 146 -----SS---L--AGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDR-KVSQPIEGHAASFAQFKMEGNAEEST 214 (494)
T ss_dssp -----GG---G--TTCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEESTT-CCEEEECCSEEEEEEEECTTCSSEEE
T ss_pred -----hh---c--ccceEEEEEECCCCCeEEEEeecccCCcccceEEEeeccc-cccchheeeeeeeEEEecCCCCCCce
Confidence 00 0 1345666667777776654432 46788999764 4456677776665555544322
Q ss_pred eEEEEcC---CCeEEEEEcCCCCCC---cccccceeec---cccccEEEEEEcCCCCEEEEecCCCcEEEEeCCCccccc
Q 047325 209 LIFTGSA---DGTVKVWKREQHGKG---TKHSLAQTLL---KQECAVTALVVSSSRSIVYCGSSDGLVNFWEREKQLSHG 279 (368)
Q Consensus 209 ~l~~~~~---dg~i~i~d~~~~~~~---~~~~~~~~~~---~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~ 279 (368)
.++.+.. .+.+++.++.....+ ...+...... ...+-..++..++....+..-+.-|.+++||++++..+.
T Consensus 215 lf~fa~r~~~g~kLhi~Ei~~~~~~~~~f~kk~vdv~fppe~~~DFPvamqvs~kygviyviTK~G~i~lyDleTgt~i~ 294 (494)
T 1bpo_A 215 LFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIY 294 (494)
T ss_dssp EEEEEECSTTCCEEEEEECSCCCTTCCCCCCEEEECCCCTTSTTCCEEEEEEETTTTEEEEEETTSEEEEEETTTCCEEE
T ss_pred EEEEEEecCCCcEEEEEEcCCCccCCCCccceeeeeeCCcccccCceeEEEecccCCEEEEEecCceEEEEecccceeee
Confidence 2333322 378999998654111 1111111111 224556788888888888899999999999999987653
Q ss_pred ee-eeccceEEEEEEeCCCEEEEeeCCCeEEEEecCC
Q 047325 280 GV-LKGHKLAVLCLAAAGKLVFSGSADKTICVWRRDG 315 (368)
Q Consensus 280 ~~-~~~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~ 315 (368)
.. +......+.+-.....-++.....|.|.--.++.
T Consensus 295 ~nrIs~~~iF~t~~~~~~~Gi~~Vnr~GqVl~v~v~e 331 (494)
T 1bpo_A 295 MNRISGETIFVTAPHEATAGIIGVNRKGQVLSVCVEE 331 (494)
T ss_dssp EEECCSSCEEEEEEETTTTEEEEEETTCEEEEEEECT
T ss_pred eecccCCceEEecccCCCCcEEEEccCceEEEEEEcc
Confidence 22 2223333333333444555555777766665544
No 337
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=96.01 E-value=0.7 Score=42.41 Aligned_cols=151 Identities=9% Similarity=0.058 Sum_probs=78.2
Q ss_pred CCCEEEEEeCC------CcEEEEEccCCeEEE--EeecCCCceEEEEeCCCCeEEEEcCCC--eEEEEEcCCCCCCcccc
Q 047325 165 DCGLLYTASWD------RTFKVWRISDSKCLE--SVSAHDDAVNSVVSSSEGLIFTGSADG--TVKVWKREQHGKGTKHS 234 (368)
Q Consensus 165 ~~~~l~~~~~d------~~i~iwd~~~~~~~~--~~~~~~~~v~~~~~~~~~~l~~~~~dg--~i~i~d~~~~~~~~~~~ 234 (368)
++..++.|+.+ ..+.+||+.+.+=.. .+......-.++.+..+..++.|+.++ .+.+||..+.. ..
T Consensus 451 ~~~lyv~GG~~~~~~~~~dv~~yd~~t~~W~~~~~~p~~R~~h~~~~~~~~~iyv~GG~~~~~~v~~yd~~t~~----W~ 526 (695)
T 2zwa_A 451 NNQLLLIGGRKAPHQGLSDNWIFDMKTREWSMIKSLSHTRFRHSACSLPDGNVLILGGVTEGPAMLLYNVTEEI----FK 526 (695)
T ss_dssp TTEEEEECCBSSTTCBCCCCEEEETTTTEEEECCCCSBCCBSCEEEECTTSCEEEECCBCSSCSEEEEETTTTE----EE
T ss_pred CCEEEEEcCCCCCCCccccEEEEeCCCCcEEECCCCCCCcccceEEEEcCCEEEEECCCCCCCCEEEEECCCCc----eE
Confidence 66677777643 357889988754222 222212222223323333666776654 68999987642 11
Q ss_pred ccee---eccccccEEEEEEcCC-CCEEEEecC--C-----CcEEEEeCCCccc---c-ceeeec----cceEEEEEEeC
Q 047325 235 LAQT---LLKQECAVTALVVSSS-RSIVYCGSS--D-----GLVNFWEREKQLS---H-GGVLKG----HKLAVLCLAAA 295 (368)
Q Consensus 235 ~~~~---~~~~~~~i~~~~~~~~-~~~l~~~~~--d-----g~i~i~d~~~~~~---~-~~~~~~----~~~~~~~~~~~ 295 (368)
.... .........++.+..+ +++++.|+. + ..+.+||+.+... . ...... ......+...+
T Consensus 527 ~~~~~g~~p~~r~~~~a~v~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~p~~~R~~~~~~~~~ 606 (695)
T 2zwa_A 527 DVTPKDEFFQNSLVSAGLEFDPVSKQGIILGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQHPLFQRYGSQIKYIT 606 (695)
T ss_dssp ECCCSSGGGGSCCBSCEEEEETTTTEEEEECCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEECGGGCCBSCEEEEEE
T ss_pred EccCCCCCCCcccceeEEEEeCCCCEEEEECCcCCCCCeeeCcEEEEEccCCccccceEEEEcCCCCCCCcccceEEEeC
Confidence 1111 1111122233445544 667777765 2 4588999887651 0 011110 11111223344
Q ss_pred -CCEEEEeeCC--------CeEEEEecCCCcee
Q 047325 296 -GKLVFSGSAD--------KTICVWRRDGAIHT 319 (368)
Q Consensus 296 -~~~l~~~~~d--------g~i~iw~~~~~~~~ 319 (368)
+++++.|+.+ ..+.+||+.+....
T Consensus 607 ~~~iyv~GG~~~~~~~~~~~~v~~yd~~t~~W~ 639 (695)
T 2zwa_A 607 PRKLLIVGGTSPSGLFDRTNSIISLDPLSETLT 639 (695)
T ss_dssp TTEEEEECCBCSSCCCCTTTSEEEEETTTTEEE
T ss_pred CCEEEEECCccCCCCCCCCCeEEEEECCCCeEE
Confidence 7888888743 45899998877555
No 338
>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}
Probab=95.99 E-value=0.055 Score=44.37 Aligned_cols=148 Identities=11% Similarity=0.067 Sum_probs=73.8
Q ss_pred CEEEEccCCCcEEEEcCCcceecccCCC---CCeeEEEE----eCCEEEEE--eCCCeEEEEeecCCCccccccCCcccc
Q 047325 55 DLLYTGSDSKNIRVWKNLKEFCGFKASS---GLVKAIVI----SGEKIFTG--HQDGKIRVWKISPKNQSVHKRAGTLPT 125 (368)
Q Consensus 55 ~~l~s~~~dg~i~iw~~~~~~~~~~~~~---~~v~~~~~----~~~~l~s~--~~dg~i~vw~~~~~~~~~~~~~~~~~~ 125 (368)
++++.++.||.|.-.|..++....+... .++....- .+..++.+ +.||.|..++..++.............
T Consensus 11 ~~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~~~~~~~~lv~ 90 (339)
T 2be1_A 11 DILIAADVEGGLHAVDRRNGHIIWSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQKLPLSIRQLVS 90 (339)
T ss_dssp EEEEEEETTSCEEEEETTTTEEEEEECGGGSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEEEEEEHHHHHT
T ss_pred CEEEEEeCCCeEEEEECCCCcEEEEecCCccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcEEeeecccccee
Confidence 3677788888888887665433222111 12221110 12244444 589999999987764322111110000
Q ss_pred ceeeeeccCCCCceeEecccceeeeeecCCCEe-EEEEcCCCCEEEEEeCCCcEEEEEccCCeEEEEeecCCC--c----
Q 047325 126 LKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVS-CMSLDQDCGLLYTASWDRTFKVWRISDSKCLESVSAHDD--A---- 198 (368)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~-~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~--~---- 198 (368)
...+.+...+|. ..--...+..+++|+.+|.+...|+.+|+.+..+..... .
T Consensus 91 ---------------------~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~ 149 (339)
T 2be1_A 91 ---------------------TSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISAFGPGSKNGYFGSQ 149 (339)
T ss_dssp ---------------------TCSEEEECC----------CCEEEEECEEEEEEEEEETTTCCEEEEESTTCBCC-----
T ss_pred ---------------------ccccccCCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEEEEecCCCccccccc
Confidence 000000111111 000001345889999999999999999999988864321 0
Q ss_pred -eEEEEe------CCCCeEEEEcCCCeEEEEE
Q 047325 199 -VNSVVS------SSEGLIFTGSADGTVKVWK 223 (368)
Q Consensus 199 -v~~~~~------~~~~~l~~~~~dg~i~i~d 223 (368)
..|... ..++.++.+..+..+.+.+
T Consensus 150 ~e~~~~~~d~~~d~~~~~v~ig~~~y~v~~~~ 181 (339)
T 2be1_A 150 SVDCSPEEKIKLQECENMIVIGKTIFELGIHS 181 (339)
T ss_dssp ---------------CCEEEEEEEEEECEECC
T ss_pred ccccccccccccccCCCeEEEecceEEEEEEC
Confidence 111111 1123677777777766666
No 339
>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A
Probab=95.82 E-value=0.8 Score=39.48 Aligned_cols=109 Identities=9% Similarity=0.072 Sum_probs=61.4
Q ss_pred CCCEeEEEEcCCCCEEEEEeCCCcEEEEEccCCeEE--EEeec------CCCceEEEEeCC----CCeEEEEcC------
Q 047325 154 SDAVSCMSLDQDCGLLYTASWDRTFKVWRISDSKCL--ESVSA------HDDAVNSVVSSS----EGLIFTGSA------ 215 (368)
Q Consensus 154 ~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~--~~~~~------~~~~v~~~~~~~----~~~l~~~~~------ 215 (368)
-.....++|.|+++++++-...+.|++++..+++.. ..+.. ....+..|+++| ++.|+....
T Consensus 26 l~~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~~~ 105 (454)
T 1cru_A 26 LNKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPKS 105 (454)
T ss_dssp CSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTTC
T ss_pred CCCceEEEEcCCCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEeccccCC
Confidence 345679999999986665443347988886555432 22221 235567999999 454444432
Q ss_pred -------CCeEEEEEcCCCCC-C-cccccceeec-cccccEEEEEEcCCCCEEEEec
Q 047325 216 -------DGTVKVWKREQHGK-G-TKHSLAQTLL-KQECAVTALVVSSSRSIVYCGS 262 (368)
Q Consensus 216 -------dg~i~i~d~~~~~~-~-~~~~~~~~~~-~~~~~i~~~~~~~~~~~l~~~~ 262 (368)
...|.-++...... . ........+. ........|+|.|+|.+.++.+
T Consensus 106 ~~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG~Lyv~~G 162 (454)
T 1cru_A 106 TDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTIG 162 (454)
T ss_dssp --CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEEEC
T ss_pred CccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCCeEEEEEC
Confidence 23566666543211 0 0111111111 1123478999999998777644
No 340
>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}
Probab=95.72 E-value=0.024 Score=46.52 Aligned_cols=109 Identities=8% Similarity=0.036 Sum_probs=65.6
Q ss_pred CCEEEEEeCCCeEEEEeecCCCccccccCCc-cccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcCCCCEEE
Q 047325 92 GEKIFTGHQDGKIRVWKISPKNQSVHKRAGT-LPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCGLLY 170 (368)
Q Consensus 92 ~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~ 170 (368)
++.++.++.||.|.-.|.++++......... .+... ...... ..++..++
T Consensus 10 ~~~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~p~~~-------------------------~~~~~~----~~~~~~~v 60 (339)
T 2be1_A 10 SDILIAADVEGGLHAVDRRNGHIIWSIEPENFQPLIE-------------------------IQEPSR----LETYETLI 60 (339)
T ss_dssp EEEEEEEETTSCEEEEETTTTEEEEEECGGGSCCSEE-------------------------CCCSCT----TTSSEEEE
T ss_pred CCEEEEEeCCCeEEEEECCCCcEEEEecCCccCCcEE-------------------------ecCCcc----ccCCcEEE
Confidence 5688999999999999999988766654430 00000 000000 01223333
Q ss_pred EE-eCCCcEEEEEccCCeEEEEeec----CCCceEEE---Ee------CCCCeEEEEcCCCeEEEEEcCCCCC
Q 047325 171 TA-SWDRTFKVWRISDSKCLESVSA----HDDAVNSV---VS------SSEGLIFTGSADGTVKVWKREQHGK 229 (368)
Q Consensus 171 ~~-~~d~~i~iwd~~~~~~~~~~~~----~~~~v~~~---~~------~~~~~l~~~~~dg~i~i~d~~~~~~ 229 (368)
.. ..||.|..+|..+|.....+.. ...++..- .. +.++.+++|+.+|.+.-.|++++..
T Consensus 61 v~p~~dG~l~a~~~~~G~~~~~~~~~~lv~~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~ 133 (339)
T 2be1_A 61 IEPFGDGNIYYFNAHQGLQKLPLSIRQLVSTSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEI 133 (339)
T ss_dssp ECCSTTTEEEEEETTTEEEEEEEEHHHHHTTCSEEEECC----------CCEEEEECEEEEEEEEEETTTCCE
T ss_pred EEECCCCEEEEEECCCCcEEeeeccccceeccccccCCCceeecccccccCCEEEEEecCCEEEEEECCCCcE
Confidence 33 5799999999988865544432 11222210 01 1456899999999999999988754
No 341
>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}
Probab=95.62 E-value=0.38 Score=39.95 Aligned_cols=145 Identities=9% Similarity=0.076 Sum_probs=79.0
Q ss_pred ceEEEEeCCCCe-EEEEcCCCeEEEEEcCCCCCCcccc-cceeeccccccEEEEEEcCC---CCEEEEec-C-------C
Q 047325 198 AVNSVVSSSEGL-IFTGSADGTVKVWKREQHGKGTKHS-LAQTLLKQECAVTALVVSSS---RSIVYCGS-S-------D 264 (368)
Q Consensus 198 ~v~~~~~~~~~~-l~~~~~dg~i~i~d~~~~~~~~~~~-~~~~~~~~~~~i~~~~~~~~---~~~l~~~~-~-------d 264 (368)
....+++.|++. |+++...|.|++++...... .... ..............++++|+ +..|.... . .
T Consensus 19 ~P~~i~~~pdG~~l~V~e~~G~i~~~~~~g~~~-~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~~~~~~~g~~~ 97 (353)
T 2g8s_A 19 HPWALAFLPDNHGMLITLRGGELRHWQAGKGLS-APLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSYSEVGDDGKAG 97 (353)
T ss_dssp SEEEEEECSTTCCEEEEETTTEEEEEETTTEEC-CCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEEEEEECSSSCEE
T ss_pred CcEEEEEcCCCCEEEEEeCCceEEEEeCCCcee-eEecCCcccccCCCCCceeEEECCCCCCCCEEEEEEeCCCCCCCce
Confidence 457899999996 88888899999998532100 0000 00111223456789999995 44444442 2 2
Q ss_pred CcEEEEeCCCc-------ccccee-----eeccceEEEEEEeCCCEEEEeeC-------------CCeEEEEecCCCc--
Q 047325 265 GLVNFWEREKQ-------LSHGGV-----LKGHKLAVLCLAAAGKLVFSGSA-------------DKTICVWRRDGAI-- 317 (368)
Q Consensus 265 g~i~i~d~~~~-------~~~~~~-----~~~~~~~~~~~~~~~~~l~~~~~-------------dg~i~iw~~~~~~-- 317 (368)
..|..|++... +.+... ...|...-+.+.+||.+.++-+. .|.|.-++.+...
T Consensus 98 ~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~Gd~~~~~~~q~~~~~~g~I~ri~~dG~~p~ 177 (353)
T 2g8s_A 98 TAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDGKGYLFIALGENNQRPTAQDLDKLQGKLVRLTDQGEIPD 177 (353)
T ss_dssp EEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEECSSSEEEEEECCTTCGGGGGCTTSCTTEEEEEETTSCCCT
T ss_pred eEEEEEEECCCCCCCCceEEEEEECCCCCCCcccCccEEECCCCcEEEEECCCCCCCccCCCCCCCeEEEEECCCCCCCC
Confidence 35666665422 111011 12354555888899966655433 2456666654320
Q ss_pred ----------eeeeEeeeccccCeeEEEEec-CCeeeec
Q 047325 318 ----------HTCLSVLTGHTGPVKCLAVEE-DRDSSSS 345 (368)
Q Consensus 318 ----------~~~~~~~~~h~~~v~~l~~~~-~~~~~~~ 345 (368)
...+.. .+|. ....++|+| ++.+.++
T Consensus 178 ~npf~~~~~~~~~i~a-~G~r-np~gl~~d~~~g~l~~~ 214 (353)
T 2g8s_A 178 DNPFIKESGVRAEIWS-YGIR-NPQGMAMNPWSNALWLN 214 (353)
T ss_dssp TCTTTTSTTSCTTEEE-ECCS-EEEEEEEETTTTEEEEE
T ss_pred CCCCcCCCCCCccEEE-EcCc-CccceEEECCCCCEEEE
Confidence 111111 2333 367899999 6765544
No 342
>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}
Probab=95.57 E-value=0.8 Score=37.72 Aligned_cols=110 Identities=5% Similarity=0.017 Sum_probs=65.0
Q ss_pred cCCCEeEEEEcCCCCEEEEEeCCCcEEEEEccCCeEE--EEe----ecCCCceEEEEeCCC----CeEEEE---cCCCeE
Q 047325 153 HSDAVSCMSLDQDCGLLYTASWDRTFKVWRISDSKCL--ESV----SAHDDAVNSVVSSSE----GLIFTG---SADGTV 219 (368)
Q Consensus 153 ~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~--~~~----~~~~~~v~~~~~~~~----~~l~~~---~~dg~i 219 (368)
.-.....++|.|++.++++--..|.|++++...++.. ..+ .........|+++|+ +.|+.. ..++.|
T Consensus 30 gL~~P~~ia~~pdG~llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~~~~~~v 109 (347)
T 3das_A 30 GLNSPWGLAPLPGGDLLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFTSASDNRI 109 (347)
T ss_dssp CCSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEECSSSEEE
T ss_pred CCCCceEEEEcCCCcEEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCCEEEEEEecCCCCEE
Confidence 4456789999999986666544899999987655532 222 123456789999995 544433 345567
Q ss_pred EEEEcCCCC----CC-cccccceeec-cccccEEEEEEcCCCCEEEEec
Q 047325 220 KVWKREQHG----KG-TKHSLAQTLL-KQECAVTALVVSSSRSIVYCGS 262 (368)
Q Consensus 220 ~i~d~~~~~----~~-~~~~~~~~~~-~~~~~i~~~~~~~~~~~l~~~~ 262 (368)
.-|.+.... .. ........+. ........|.|.|++.+.++.+
T Consensus 110 ~R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG~Lyvt~G 158 (347)
T 3das_A 110 VRMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDKMLYAGTG 158 (347)
T ss_dssp EEEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTSCEEEECB
T ss_pred EEEEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCCCCCEEEEEC
Confidence 667665421 10 1111111121 1112345799999998777643
No 343
>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A
Probab=95.34 E-value=1.2 Score=38.43 Aligned_cols=103 Identities=9% Similarity=0.147 Sum_probs=58.7
Q ss_pred CceEEEEeCCCCeEEEEcCCC-eEEEEEcCCCCCCcccccceeec------cccccEEEEEEcCC---CCEEEEecC---
Q 047325 197 DAVNSVVSSSEGLIFTGSADG-TVKVWKREQHGKGTKHSLAQTLL------KQECAVTALVVSSS---RSIVYCGSS--- 263 (368)
Q Consensus 197 ~~v~~~~~~~~~~l~~~~~dg-~i~i~d~~~~~~~~~~~~~~~~~------~~~~~i~~~~~~~~---~~~l~~~~~--- 263 (368)
.....+++.|+|.|+++...+ .|++++...+.. .....+. ..+..+..++++|+ +..|.....
T Consensus 27 ~~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~----~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~ 102 (454)
T 1cru_A 27 NKPHALLWGPDNQIWLTERATGKILRVNPESGSV----KTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKN 102 (454)
T ss_dssp SSEEEEEECTTSCEEEEETTTCEEEEECTTTCCE----EEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEEC
T ss_pred CCceEEEEcCCCcEEEEEcCCCEEEEEECCCCcE----eEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEeccc
Confidence 356799999999555556654 788887643211 1111111 13567889999995 455544432
Q ss_pred ----------CCcEEEEeCCCc-------cccceee---eccceEEEEEEeCCCEEEEee
Q 047325 264 ----------DGLVNFWEREKQ-------LSHGGVL---KGHKLAVLCLAAAGKLVFSGS 303 (368)
Q Consensus 264 ----------dg~i~i~d~~~~-------~~~~~~~---~~~~~~~~~~~~~~~~l~~~~ 303 (368)
...|.-|+.... +.+...+ ..|...-+.|.+||.+.++.+
T Consensus 103 ~~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG~Lyv~~G 162 (454)
T 1cru_A 103 PKSTDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTIG 162 (454)
T ss_dssp TTC--CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEEEC
T ss_pred cCCCccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCCeEEEEEC
Confidence 134555554321 1111111 246677788889998777644
No 344
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B
Probab=95.12 E-value=0.98 Score=36.03 Aligned_cols=183 Identities=17% Similarity=0.146 Sum_probs=99.8
Q ss_pred CCeeEEEEeCCEEEEEeCCCeEEEEeecCCCccccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEE
Q 047325 83 GLVKAIVISGEKIFTGHQDGKIRVWKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSL 162 (368)
Q Consensus 83 ~~v~~~~~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 162 (368)
..|..++.-....+.-. ||.|..|-.....+...... ....|..++.
T Consensus 24 ~~i~~ia~G~~h~~~l~-~G~v~~wG~n~~Gqlg~p~~--------------------------------~~~~i~~ia~ 70 (282)
T 3qhy_B 24 SGVDAIAGGYFHGLALK-GGKVLGWGANLNGQLTMPAA--------------------------------TQSGVDAIAA 70 (282)
T ss_dssp SSCCEEEECSSEEEEEE-TTEEEEEECCSSSTTSCCGG--------------------------------GGSCCCEEEE
T ss_pred CCCcEEEeCCCeEEEEE-CCEEEEEeCCCCCCCCCCcc--------------------------------CCCCEEEEEe
Confidence 36777777655544446 99999998665433221000 2234666665
Q ss_pred cCCCCEEEEEeCCCcEEEEEccCCeEEEEeecCCCceEEEEeCCCCeEEEEcCCCeEEEEEcCCCCCCcccccceeeccc
Q 047325 163 DQDCGLLYTASWDRTFKVWRISDSKCLESVSAHDDAVNSVVSSSEGLIFTGSADGTVKVWKREQHGKGTKHSLAQTLLKQ 242 (368)
Q Consensus 163 ~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~ 242 (368)
.... .++. . ||.|..|-....-.+..-..-...|..++...+..++.. ||.|+.|-.....+.. .....
T Consensus 71 G~~h-s~~l-~-~G~v~~wG~n~~Gqlg~P~~~~~~v~~ia~G~~hs~al~--~G~v~~wG~n~~gqlg------~~~~~ 139 (282)
T 3qhy_B 71 GNYH-SLAL-K-DGEVIAWGGNEDGQTTVPAEARSGVDAIAAGAWASYALK--DGKVIAWGDDSDGQTT------VPAEA 139 (282)
T ss_dssp CSSE-EEEE-E-TTEEEEEECCTTSTTCCCGGGSSSEEEEEEETTEEEEEE--TTEEEEEECCTTSTTS------CCGGG
T ss_pred CCCE-EEEE-E-CCEEEEeeCCCCCCCCCCcccCCCeEEEECcCCEEEEEe--CCeEEEecCCCCCcCC------CCccC
Confidence 4432 2333 4 888888875432111111111346777777655544443 9999999876543311 11112
Q ss_pred cccEEEEEEcCCCCEEEEecCCCcEEEEeCCCccccceeeeccceEEEEEEeCCCEEEEeeCCCeEEEEecC
Q 047325 243 ECAVTALVVSSSRSIVYCGSSDGLVNFWEREKQLSHGGVLKGHKLAVLCLAAAGKLVFSGSADKTICVWRRD 314 (368)
Q Consensus 243 ~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~ 314 (368)
...|..++...+...+ -. ||.|+.|-....-.+. ....-...+..++......+.- .||.|+.|-..
T Consensus 140 ~~~i~~i~~G~~~~~~--l~-~G~v~~wG~n~~gqlg-~p~~~~~~v~~i~~G~~hs~al-~~G~v~~wG~n 206 (282)
T 3qhy_B 140 QSGVTALDGGVYTALA--VK-NGGVIAWGDNYFGQTT-VPAEAQSGVDDVAGGIFHSLAL-KDGKVIAWGDN 206 (282)
T ss_dssp GSSEEEEEECSSEEEE--EE-TTEEEEEECCTTSTTS-CCGGGGSSEEEEEECSSEEEEE-ETTEEEEEECC
T ss_pred CCCeEEEEcccCEEEE--EE-CCEEEEecCCCCCCCC-CceecCCCeEEEEecCCEEEEE-ECCeEEEEECC
Confidence 3457777765443232 23 7999999765422221 1111134566777655544444 69999999654
No 345
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=94.99 E-value=3.1 Score=41.16 Aligned_cols=186 Identities=10% Similarity=0.135 Sum_probs=104.6
Q ss_pred CCcEEEEcCCcc--eecccCCCCCeeEEEEe-CCEEEEEeCCCeEEEEeecCCCccccccCCccccceeeeeccCCCCce
Q 047325 63 SKNIRVWKNLKE--FCGFKASSGLVKAIVIS-GEKIFTGHQDGKIRVWKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNY 139 (368)
Q Consensus 63 dg~i~iw~~~~~--~~~~~~~~~~v~~~~~~-~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (368)
..++.|+|+... +..+.- ..+|.-..|- .+.|+-.+ +..|.-|+++............
T Consensus 85 g~~lQiFnl~~k~klks~~~-~e~VvfWkWis~~~l~lVT-~~aVyHW~~~~~s~P~k~fdR~----------------- 145 (1630)
T 1xi4_A 85 GKTLQIFNIEMKSKMKAHTM-TDDVTFWKWISLNTVALVT-DNAVYHWSMEGESQPVKMFDRH----------------- 145 (1630)
T ss_pred CCeEEEeehHHhhhhccccc-CCCceEEEecCCCeeEEEc-CCeEEEeccCCCCccHHHHhcc-----------------
Confidence 678999998643 333333 3456666665 55665555 5589999997533211111000
Q ss_pred eEecccceeeeeecCCCEeEEEEcCCCCEEEEEe-------CCCcEEEEEccCCeEEEEeecCCCceEEEEeCCC---Ce
Q 047325 140 IEVRRHRTALWIRHSDAVSCMSLDQDCGLLYTAS-------WDRTFKVWRISDSKCLESVSAHDDAVNSVVSSSE---GL 209 (368)
Q Consensus 140 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-------~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~---~~ 209 (368)
..+ ....|..-..+++.+.++..| -.|.+.+|..+.+ ..+.+.+|......+..... ..
T Consensus 146 --------~~L--~~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~er~-~sQ~iegha~~F~~~~~~~~~~~~~ 214 (1630)
T 1xi4_A 146 --------SSL--AGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRK-VSQPIEGHAASFAQFKMEGNAEEST 214 (1630)
T ss_pred --------hhc--ccCeeEEeeeCCCCCeEEEEeeccCCCcccceeeeeecccc-cchhhhHhHhhhheeccCCCCCCce
Confidence 000 134566666677777665443 3478899987543 34456666554433333211 12
Q ss_pred EEEEcC----CCeEEEEEcCCC--CC-Ccccccceeecc---ccccEEEEEEcCCCCEEEEecCCCcEEEEeCCCcccc
Q 047325 210 IFTGSA----DGTVKVWKREQH--GK-GTKHSLAQTLLK---QECAVTALVVSSSRSIVYCGSSDGLVNFWEREKQLSH 278 (368)
Q Consensus 210 l~~~~~----dg~i~i~d~~~~--~~-~~~~~~~~~~~~---~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~ 278 (368)
+++-.. .+.++|-++... +. ....+....... ...-..++..++....+..-+.-|.+++||+.++..+
T Consensus 215 l~~f~~~~~~g~kLhi~Ei~~~~~~~~~f~kk~~~~~~~~~~~~Dfpv~~~vs~k~g~iy~itk~G~~~~~d~~t~~~i 293 (1630)
T 1xi4_A 215 LFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCI 293 (1630)
T ss_pred EEEEEEecCCCceEEEEecCCCccCCCCCccccccccCCcccccCcceEEEeccccCEEEEEecCceEEEEecccchhh
Confidence 332221 378999998543 11 111111111111 2344556778887788888889999999999987665
No 346
>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}
Probab=94.91 E-value=1.2 Score=35.93 Aligned_cols=159 Identities=9% Similarity=0.043 Sum_probs=80.4
Q ss_pred EEcCCCCEEEEEeCC--------------CcEEEEEccCCeEEEEeecCCCceEEEEeCCCC-eEEEEc----CCCeEEE
Q 047325 161 SLDQDCGLLYTASWD--------------RTFKVWRISDSKCLESVSAHDDAVNSVVSSSEG-LIFTGS----ADGTVKV 221 (368)
Q Consensus 161 ~~~~~~~~l~~~~~d--------------~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~----~dg~i~i 221 (368)
-+++++..|+-+... ..|+..++..++... +.. .... .+++++ .|+-.. .+..|..
T Consensus 59 ~i~~~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i~~dg~~~~~-l~~--~~~~--~~s~~g~~Iy~~~~~~~~~~~Iy~ 133 (302)
T 3s25_A 59 YINADKNYVYYVRNNNQKITSQTFFSYDRNSLCRIKRNGHGSTV-LDP--DPCI--YASLIGNYIYYLHYDTQTATSLYR 133 (302)
T ss_dssp EEEECSSEEEEEEECC------CCSSCCSEEEEEEETTSCCCEE-EEC--SCEE--EEEEETTEEEEEEESSSSCEEEEE
T ss_pred eEEEcCCEEEEEECCCCcccccceeccCCCeEEEEeCCCCcceE-eec--CCcc--EEEEeCCEEEEEeecCCCCceEEE
Confidence 346667766655432 367777776654332 221 1222 445555 444433 3445555
Q ss_pred EEcCCCCCCcccccceeeccccccEEEEEEcCCCCEEEEecC-CCcEEEEeCCCccccceeeeccceEEEEEEeCCCEEE
Q 047325 222 WKREQHGKGTKHSLAQTLLKQECAVTALVVSSSRSIVYCGSS-DGLVNFWEREKQLSHGGVLKGHKLAVLCLAAAGKLVF 300 (368)
Q Consensus 222 ~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 300 (368)
.++.... ...+..+.. ..++|+++.|+-.+. ...|...++...... ....+ ... ..+.|++.+|+
T Consensus 134 ~~~dGs~-------~~~lt~~~~----~~~~~~g~~iy~t~~g~~~Iy~~~l~g~~~~-~l~~~-~~~-~~~~P~g~~iy 199 (302)
T 3s25_A 134 IRIDGEE-------KKKIKNHYL----FTCNTSDRYFYYNNPKNGQLYRYDTASQSEA-LFYDC-NCY-KPVVLDDTNVY 199 (302)
T ss_dssp EETTSCC-------CEEEESSCC----CCSEEETTEEEEECTTTCCEEEEETTTTEEE-EEECS-CEE-EEEEEETTEEE
T ss_pred EECCCCC-------eEEEeCCCc----eEeeEECCEEEEEeCCCceEEEEECCCCCEE-EEeCC-Ccc-ceeeecCCEEE
Confidence 5655321 122222221 346777877775554 678888888765432 22222 222 23568888877
Q ss_pred EeeCC--CeEEEEecCCCceeeeEeeeccccCeeEEEEecCCeeeec
Q 047325 301 SGSAD--KTICVWRRDGAIHTCLSVLTGHTGPVKCLAVEEDRDSSSS 345 (368)
Q Consensus 301 ~~~~d--g~i~iw~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~ 345 (368)
-...+ ..|..-+++...... +. ...+ ..|+|++..+..
T Consensus 200 ~t~~~~~~~I~~~~ldG~~~~~---Lt--~~~~--~~~~~~g~~Iy~ 239 (302)
T 3s25_A 200 YMDVNRDNAIVHVNINNPNPVV---LT--EANI--EHYNVYGSLIFY 239 (302)
T ss_dssp EEEGGGTTEEEEECSSSCCCEE---CS--CSCE--EEEEEETTEEEE
T ss_pred EEEcCCCcEEEEEECCCCCeEE---Ee--CCCc--ceEEECCCEEEE
Confidence 65433 356565665543222 22 1223 236677766553
No 347
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=94.81 E-value=2.3 Score=38.97 Aligned_cols=147 Identities=9% Similarity=0.084 Sum_probs=76.5
Q ss_pred CCCCEEEEEeCC----CcEEEEEccCCeEEEEe-e-------cCCCceEEEEeCCCC-eEEEEcCC------CeEEEEEc
Q 047325 164 QDCGLLYTASWD----RTFKVWRISDSKCLESV-S-------AHDDAVNSVVSSSEG-LIFTGSAD------GTVKVWKR 224 (368)
Q Consensus 164 ~~~~~l~~~~~d----~~i~iwd~~~~~~~~~~-~-------~~~~~v~~~~~~~~~-~l~~~~~d------g~i~i~d~ 224 (368)
.++..++.|+.+ ..+.+||+.+++-...- . .....-..+.+..++ .++.|+.+ ..+.+||.
T Consensus 396 ~~~~iyv~GG~~~~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~~~~~~lyv~GG~~~~~~~~~dv~~yd~ 475 (695)
T 2zwa_A 396 AGNDVFYMGGSNPYRVNEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISRNNQLLLIGGRKAPHQGLSDNWIFDM 475 (695)
T ss_dssp CSSCEEEECCBSSSBCCCEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEETTTTEEEEECCBSSTTCBCCCCEEEET
T ss_pred ECCEEEEECCCCCCCcCcEEEEECCCCeEEEeccCCCCCCCCccccceEEEEEccCCEEEEEcCCCCCCCccccEEEEeC
Confidence 456677777753 46889998876533222 1 111122233332145 66666643 35788888
Q ss_pred CCCCCCcccccceeeccccccEEEEEEcCCCCEEEEecCCC--cEEEEeCCCcccccee--------eeccceEEEEEEe
Q 047325 225 EQHGKGTKHSLAQTLLKQECAVTALVVSSSRSIVYCGSSDG--LVNFWEREKQLSHGGV--------LKGHKLAVLCLAA 294 (368)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg--~i~i~d~~~~~~~~~~--------~~~~~~~~~~~~~ 294 (368)
.+.. .............. +++...++++++.|+.++ .+.+||..+..-.... ...|. ...+..
T Consensus 476 ~t~~----W~~~~~~p~~R~~h-~~~~~~~~~iyv~GG~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~--a~v~~~ 548 (695)
T 2zwa_A 476 KTRE----WSMIKSLSHTRFRH-SACSLPDGNVLILGGVTEGPAMLLYNVTEEIFKDVTPKDEFFQNSLVSA--GLEFDP 548 (695)
T ss_dssp TTTE----EEECCCCSBCCBSC-EEEECTTSCEEEECCBCSSCSEEEEETTTTEEEECCCSSGGGGSCCBSC--EEEEET
T ss_pred CCCc----EEECCCCCCCcccc-eEEEEcCCEEEEECCCCCCCCEEEEECCCCceEEccCCCCCCCccccee--EEEEeC
Confidence 7531 11111111111222 223323778888887655 6899998764321111 11121 122333
Q ss_pred C-CCEEEEeeC--C-----CeEEEEecCCCc
Q 047325 295 A-GKLVFSGSA--D-----KTICVWRRDGAI 317 (368)
Q Consensus 295 ~-~~~l~~~~~--d-----g~i~iw~~~~~~ 317 (368)
+ +++++.|+. + +.+.+||+.+..
T Consensus 549 ~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~ 579 (695)
T 2zwa_A 549 VSKQGIILGGGFMDQTTVSDKAIIFKYDAEN 579 (695)
T ss_dssp TTTEEEEECCBCTTSSCBCCEEEEEEECTTC
T ss_pred CCCEEEEECCcCCCCCeeeCcEEEEEccCCc
Confidence 3 667777876 2 458899988775
No 348
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens}
Probab=94.77 E-value=1.6 Score=36.71 Aligned_cols=241 Identities=12% Similarity=0.092 Sum_probs=115.3
Q ss_pred ecCCEEEEccCCCcEEEEcCCc--ce--------ec---cc-CCCCCeeEEEEeCCEEEEEeCCCeEEEEeecCCCcccc
Q 047325 52 ASKDLLYTGSDSKNIRVWKNLK--EF--------CG---FK-ASSGLVKAIVISGEKIFTGHQDGKIRVWKISPKNQSVH 117 (368)
Q Consensus 52 ~~~~~l~s~~~dg~i~iw~~~~--~~--------~~---~~-~~~~~v~~~~~~~~~l~s~~~dg~i~vw~~~~~~~~~~ 117 (368)
+..+.++.-..||+|..|=... ++ .. .. .....+..++-.....+.-..||.|..|-.....+.-.
T Consensus 8 ~~~~~~~~l~~~G~v~~wG~n~~GqLG~~~~~~~~~p~~v~~~~~~~i~~i~~G~~~~~~l~~~G~v~~wG~n~~GqLG~ 87 (389)
T 3kci_A 8 SSGRENLYFQGSGTIYGWGHNHRGQLGGIEGAKVKVPTPCEALATLRPVQLIGGEQTLFAVTADGKLYATGYGAGGRLGI 87 (389)
T ss_dssp -------------CEEEEEECTTSTTSSCSCSEEEEEEECHHHHHTCEEEEEEETTEEEEEETTSCEEEEECCGGGTTSS
T ss_pred cCcccceeECCCCeEEEeeCCCCccCCCCcCccccCCEecccccCCceEEEEeCCCeEEEEcCCCcEEEEECCCCCCCCC
Confidence 3445666667788888883211 00 00 00 01224555655577777788899999997654322111
Q ss_pred ccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcCCCCEEEEEeCCCcEEEEEccCC-----------
Q 047325 118 KRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCGLLYTASWDRTFKVWRISDS----------- 186 (368)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~----------- 186 (368)
-........ ..+-.-....+..+++.....+.++-..||.|..|-....
T Consensus 88 g~~~~~~~p--------------------~~v~~~~~~~~~~v~i~~G~~h~~al~~~G~v~~wG~n~~GqLG~g~~~~~ 147 (389)
T 3kci_A 88 GGTESVSTP--------------------TLLESIQHVFIKKVAVNSGGKHCLALSSEGEVYSWGEAEDGKLGHGNRSPC 147 (389)
T ss_dssp SSSCCEEEE--------------------EECGGGTTSCEEEEEECTTCSEEEEEETTSCEEEEECCGGGTTCSSSCCCE
T ss_pred CCcCCccCC--------------------EEcccccCCceeEEEECcCCCeEEEEcCCCCEEEEeCCCCCcCCCCCCccC
Confidence 100000000 0000001223455666666667777788899999954321
Q ss_pred eEEEEeec-CCCceEEEEeCCCCeEEEEcCCCeEEEEEcCCCCCC------cccccceeeccccccEEEEEEcCCCCEEE
Q 047325 187 KCLESVSA-HDDAVNSVVSSSEGLIFTGSADGTVKVWKREQHGKG------TKHSLAQTLLKQECAVTALVVSSSRSIVY 259 (368)
Q Consensus 187 ~~~~~~~~-~~~~v~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~------~~~~~~~~~~~~~~~i~~~~~~~~~~~l~ 259 (368)
.....+.. ....|..++.... ..++-..+|.|+.|=.....+. ....+..........|..++......+.+
T Consensus 148 ~~p~~v~~l~~~~i~~va~G~~-hs~alt~~G~v~~wG~n~~GqLG~~~~~~~~~p~~v~~~~~~~v~~ia~G~g~~~t~ 226 (389)
T 3kci_A 148 DRPRVIESLRGIEVVDVAAGGA-HSACVTAAGDLYTWGKGRYGRLGHSDSEDQLKPKLVEALQGHRVVDIACGSGDAQTL 226 (389)
T ss_dssp EEEEECGGGTTSCEEEEEECSS-EEEEEETTSCEEEEECCGGGTTCSSSCCCEEEEEECGGGTTSCEEEEEECCSSCEEE
T ss_pred cCCeEecccCCCeEEEEEeCcC-eEEEEeCCCeEEEeCCCCCCCcCCCCCcccccceEecccCCCeEEEEEEcCCCcEEE
Confidence 11111221 2235667766543 4444567999999976432210 00111111111233566776654345666
Q ss_pred EecCCCcEEEEeCCCccc-----------cceeeeccceEEEEEEeCCCEEEEeeCCCeEEEEec
Q 047325 260 CGSSDGLVNFWEREKQLS-----------HGGVLKGHKLAVLCLAAAGKLVFSGSADKTICVWRR 313 (368)
Q Consensus 260 ~~~~dg~i~i~d~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~ 313 (368)
+-..||.|+.|-....-. +..........+..++......++-..||.|+.|-.
T Consensus 227 ~l~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~~~~v~~v~~G~~hs~alt~~G~v~~wG~ 291 (389)
T 3kci_A 227 CLTDDDTVWSWGDGDYGKLGRGGSDGCKVPMKIDSLTGLGVVKVECGSQFSVALTKSGAVYTWGK 291 (389)
T ss_dssp EEETTTEEEEEECCGGGTTSSSSCCCEEEEEECGGGTTSCEEEEEEETTEEEEEETTSCEEEEEC
T ss_pred EEccCCEEEEEeCCCCCCCCCCCCCCccccEEecccCCCcEEEEeCCCCEEEEEeCCCeEEEEeC
Confidence 667889999997542111 100111112246666666666666678999999954
No 349
>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A
Probab=94.41 E-value=2.4 Score=37.21 Aligned_cols=137 Identities=15% Similarity=0.077 Sum_probs=80.1
Q ss_pred EEEEeCCCC--eEEEEcCCCeEEEEEcCCCCC-----C-cccccceeeccccccEEEEEEcCCCCEEEEecCCCcEEEEe
Q 047325 200 NSVVSSSEG--LIFTGSADGTVKVWKREQHGK-----G-TKHSLAQTLLKQECAVTALVVSSSRSIVYCGSSDGLVNFWE 271 (368)
Q Consensus 200 ~~~~~~~~~--~l~~~~~dg~i~i~d~~~~~~-----~-~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d 271 (368)
..+..+||| .++.|-.+.++.++|++.... . .....+.............+|.++|+-..+-.-|..|.-|+
T Consensus 326 HGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e~GlGPlHt~Fd~~G~aYTtlfidSqvvkWn 405 (638)
T 3sbq_A 326 HGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPELGLGPLHTTFDGRGNAYTTLFIDSQVVKWN 405 (638)
T ss_dssp CCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCBCCSCEEEEEECSSSEEEEEETTTTEEEEEE
T ss_pred cceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeeccCCCcccEEEECCCCceEeeeeecceEEEEe
Confidence 457789999 445555688999999974211 0 00011111112334567789999996666777999999999
Q ss_pred CCCcc---------ccceeeeccceEEEEE-------EeCCCEEEEee---CCCeE----------EEEecCCCceeeeE
Q 047325 272 REKQL---------SHGGVLKGHKLAVLCL-------AAAGKLVFSGS---ADKTI----------CVWRRDGAIHTCLS 322 (368)
Q Consensus 272 ~~~~~---------~~~~~~~~~~~~~~~~-------~~~~~~l~~~~---~dg~i----------~iw~~~~~~~~~~~ 322 (368)
+.... .....+.-|-.+-.-. .++|++|++.. .|..+ .+.|+...+.+++.
T Consensus 406 i~~a~~~~~g~~~~~v~~k~dv~YqpGH~~~~~get~~~dGk~lv~lnK~skdrfl~vGpl~pen~QlidIsGdkM~lv~ 485 (638)
T 3sbq_A 406 MEEAVRAYKGEKVNYIKQKLDVHYQPGHLHASLCETNEADGKWLVALSKFSKDRFLPVGPLHPENDQLIDISGDEMKLVH 485 (638)
T ss_dssp HHHHHHHHTTCCCCCEEEEEECSSCEEEEEETTTTSTTCCSCEEEEEESCCTTSSCCCSSSCCEEEEEEECSSSSCEEEE
T ss_pred ccHHHHHhcCccCCeeeeccccccCCcccccCCCccCCCCccEEEEecccccccCcCCCCCCCCcceeEecCCCceEEEe
Confidence 87431 1222233333332222 35788888874 35433 67788776666666
Q ss_pred eeeccccCeeEEEE
Q 047325 323 VLTGHTGPVKCLAV 336 (368)
Q Consensus 323 ~~~~h~~~v~~l~~ 336 (368)
......+|=.++.+
T Consensus 486 D~P~~~EPHda~~v 499 (638)
T 3sbq_A 486 DGPTFAEPHDCIMA 499 (638)
T ss_dssp EEEESSCCCCEEEE
T ss_pred cCCCCCCCcceEEe
Confidence 65544444333333
No 350
>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}
Probab=92.64 E-value=3.4 Score=33.31 Aligned_cols=138 Identities=13% Similarity=0.189 Sum_probs=74.5
Q ss_pred EEcCCCCEEEEEe----CCCcEEEEEccCCeEEEEeecCCCceEEEEeCCCC-eEE-EEcCCCeEEEEEcCCCCCCcccc
Q 047325 161 SLDQDCGLLYTAS----WDRTFKVWRISDSKCLESVSAHDDAVNSVVSSSEG-LIF-TGSADGTVKVWKREQHGKGTKHS 234 (368)
Q Consensus 161 ~~~~~~~~l~~~~----~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~-~~~~dg~i~i~d~~~~~~~~~~~ 234 (368)
.++++++.|+-.. .+..|...++... ....+..+.. ..+++++ .|+ +......|...++.....
T Consensus 110 ~~s~~g~~Iy~~~~~~~~~~~Iy~~~~dGs-~~~~lt~~~~----~~~~~~g~~iy~t~~g~~~Iy~~~l~g~~~----- 179 (302)
T 3s25_A 110 YASLIGNYIYYLHYDTQTATSLYRIRIDGE-EKKKIKNHYL----FTCNTSDRYFYYNNPKNGQLYRYDTASQSE----- 179 (302)
T ss_dssp EEEEETTEEEEEEESSSSCEEEEEEETTSC-CCEEEESSCC----CCSEEETTEEEEECTTTCCEEEEETTTTEE-----
T ss_pred EEEEeCCEEEEEeecCCCCceEEEEECCCC-CeEEEeCCCc----eEeeEECCEEEEEeCCCceEEEEECCCCCE-----
Confidence 5666777777665 2345555666533 3334433322 3445566 444 444467888888764321
Q ss_pred cceeeccccccEEEEEEcCCCCEEEEecCC--CcEEEEeCCCccccceeeeccceEEEEEEeCCCEEEEee--CCCeEEE
Q 047325 235 LAQTLLKQECAVTALVVSSSRSIVYCGSSD--GLVNFWEREKQLSHGGVLKGHKLAVLCLAAAGKLVFSGS--ADKTICV 310 (368)
Q Consensus 235 ~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d--g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--~dg~i~i 310 (368)
..+.. +... ..+.|++.+|+-...+ ..|..-++...... .+... .+..++|++++|+-+. ..+.|..
T Consensus 180 --~~l~~--~~~~-~~~~P~g~~iy~t~~~~~~~I~~~~ldG~~~~--~Lt~~--~~~~~~~~g~~Iy~~~~~~~~~i~~ 250 (302)
T 3s25_A 180 --ALFYD--CNCY-KPVVLDDTNVYYMDVNRDNAIVHVNINNPNPV--VLTEA--NIEHYNVYGSLIFYQRGGDNPALCV 250 (302)
T ss_dssp --EEEEC--SCEE-EEEEEETTEEEEEEGGGTTEEEEECSSSCCCE--ECSCS--CEEEEEEETTEEEEEECSSSCEEEE
T ss_pred --EEEeC--CCcc-ceeeecCCEEEEEEcCCCcEEEEEECCCCCeE--EEeCC--CcceEEECCCEEEEEECCCCcEEEE
Confidence 11111 1122 2356888887765433 35666666654322 22222 2356899998887653 3456777
Q ss_pred EecCCCc
Q 047325 311 WRRDGAI 317 (368)
Q Consensus 311 w~~~~~~ 317 (368)
-+++...
T Consensus 251 ~~~DG~~ 257 (302)
T 3s25_A 251 VKNDGTG 257 (302)
T ss_dssp EETTSCC
T ss_pred EECCCCc
Confidence 7776653
No 351
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens}
Probab=91.80 E-value=5.2 Score=33.59 Aligned_cols=244 Identities=11% Similarity=0.117 Sum_probs=124.8
Q ss_pred cEEEEEecCCEEEEccCCCcEEEEcCCc----------c---eeccc-CCCCCeeEEEEe--CCEEEEEeCCCeEEEEee
Q 047325 46 HIYSLAASKDLLYTGSDSKNIRVWKNLK----------E---FCGFK-ASSGLVKAIVIS--GEKIFTGHQDGKIRVWKI 109 (368)
Q Consensus 46 ~i~~~~~~~~~l~s~~~dg~i~iw~~~~----------~---~~~~~-~~~~~v~~~~~~--~~~l~s~~~dg~i~vw~~ 109 (368)
.|..++......+.-..||.|..|-... . ..... .....+..++.. ....+.-..||.|..|-.
T Consensus 54 ~i~~i~~G~~~~~~l~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~~~~~~~v~i~~G~~h~~al~~~G~v~~wG~ 133 (389)
T 3kci_A 54 RPVQLIGGEQTLFAVTADGKLYATGYGAGGRLGIGGTESVSTPTLLESIQHVFIKKVAVNSGGKHCLALSSEGEVYSWGE 133 (389)
T ss_dssp CEEEEEEETTEEEEEETTSCEEEEECCGGGTTSSSSSCCEEEEEECGGGTTSCEEEEEECTTCSEEEEEETTSCEEEEEC
T ss_pred ceEEEEeCCCeEEEEcCCCcEEEEECCCCCCCCCCCcCCccCCEEcccccCCceeEEEECcCCCeEEEEcCCCCEEEEeC
Confidence 4666776666666667889999994221 0 00111 122334445554 566777788999999976
Q ss_pred cCCCccccccCCccccceeeeeccCCCCceeEecccceeeeee-cCCCEeEEEEcCCCCEEEEEeCCCcEEEEEccC-Ce
Q 047325 110 SPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIR-HSDAVSCMSLDQDCGLLYTASWDRTFKVWRISD-SK 187 (368)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~-~~ 187 (368)
....+.-........ . ...... ....|..++.. ....++-..+|.|..|-... ++
T Consensus 134 n~~GqLG~g~~~~~~-----~----------------p~~v~~l~~~~i~~va~G--~~hs~alt~~G~v~~wG~n~~Gq 190 (389)
T 3kci_A 134 AEDGKLGHGNRSPCD-----R----------------PRVIESLRGIEVVDVAAG--GAHSACVTAAGDLYTWGKGRYGR 190 (389)
T ss_dssp CGGGTTCSSSCCCEE-----E----------------EEECGGGTTSCEEEEEEC--SSEEEEEETTSCEEEEECCGGGT
T ss_pred CCCCcCCCCCCccCc-----C----------------CeEecccCCCeEEEEEeC--cCeEEEEeCCCeEEEeCCCCCCC
Confidence 543221111000000 0 000000 12245555543 34555666788999996432 10
Q ss_pred ----------EEEEee-cCCCceEEEEeCCC-CeEEEEcCCCeEEEEEcCCCCCCc-----ccccceeec-cccccEEEE
Q 047325 188 ----------CLESVS-AHDDAVNSVVSSSE-GLIFTGSADGTVKVWKREQHGKGT-----KHSLAQTLL-KQECAVTAL 249 (368)
Q Consensus 188 ----------~~~~~~-~~~~~v~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~-----~~~~~~~~~-~~~~~i~~~ 249 (368)
....+. .....|..++.... ...++-..||.|+.|-.....+.. ......... .....|..+
T Consensus 191 LG~~~~~~~~~p~~v~~~~~~~v~~ia~G~g~~~t~~l~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~~~~v~~v 270 (389)
T 3kci_A 191 LGHSDSEDQLKPKLVEALQGHRVVDIACGSGDAQTLCLTDDDTVWSWGDGDYGKLGRGGSDGCKVPMKIDSLTGLGVVKV 270 (389)
T ss_dssp TCSSSCCCEEEEEECGGGTTSCEEEEEECCSSCEEEEEETTTEEEEEECCGGGTTSSSSCCCEEEEEECGGGTTSCEEEE
T ss_pred cCCCCCcccccceEecccCCCeEEEEEEcCCCcEEEEEccCCEEEEEeCCCCCCCCCCCCCCccccEEecccCCCcEEEE
Confidence 111111 12345777776542 355566789999999754322210 000111111 112246666
Q ss_pred EEcCCCCEEEEecCCCcEEEEeCCCccc-----------cceeeeccceEEEEEEeCCCEEEEeeCCCeEEEEecC
Q 047325 250 VVSSSRSIVYCGSSDGLVNFWEREKQLS-----------HGGVLKGHKLAVLCLAAAGKLVFSGSADKTICVWRRD 314 (368)
Q Consensus 250 ~~~~~~~~l~~~~~dg~i~i~d~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~ 314 (368)
+... .+.+.-..+|.|+.|-....-. +..........+..++......++-..||.|+.|=..
T Consensus 271 ~~G~--~hs~alt~~G~v~~wG~n~~GqLG~g~~~~~~~P~~v~~l~~~~v~~ia~G~~h~~al~~~G~v~~wG~n 344 (389)
T 3kci_A 271 ECGS--QFSVALTKSGAVYTWGKGDYHRLGHGSDDHVRRPRQVQGLQGKKVIAIATGSLHCVCCTEDGEVYTWGDN 344 (389)
T ss_dssp EEET--TEEEEEETTSCEEEEECCGGGTTCSSSCCCEEEEEECGGGTTCCEEEEEECSSEEEEEETTCCEEEEECC
T ss_pred eCCC--CEEEEEeCCCeEEEEeCCCCCCCCCCCCccccCCeEeccCCCCCEEEEEeccCeEEEECCCCCEEEeeCC
Confidence 6543 3444456789999997542111 1011111123466777766666667889999999653
No 352
>4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A
Probab=91.10 E-value=6.3 Score=33.28 Aligned_cols=244 Identities=12% Similarity=0.116 Sum_probs=125.2
Q ss_pred CcEEEEEecCCEEEEccCC-CcEEEEcCCc--------------ceecccCCCCCeeEEEEeCCEEEEEeCCCeEEEEee
Q 047325 45 GHIYSLAASKDLLYTGSDS-KNIRVWKNLK--------------EFCGFKASSGLVKAIVISGEKIFTGHQDGKIRVWKI 109 (368)
Q Consensus 45 ~~i~~~~~~~~~l~s~~~d-g~i~iw~~~~--------------~~~~~~~~~~~v~~~~~~~~~l~s~~~dg~i~vw~~ 109 (368)
..|..++......+.-..| +.|+.|-... +..........|..++.-....+.-..||.|..|-.
T Consensus 68 ~~i~~va~G~~ht~al~~~gg~v~~wG~n~~GqLG~g~~~~~~~p~~v~~l~~~~i~~ia~G~~h~~alt~~G~v~~wG~ 147 (406)
T 4d9s_A 68 HQIVSVTCGADHTVAYSQSGMEVYSWGWGDFGRLGHGNSSDLFTPLPIKALHGIRIKQIACGDSHCLAVTMEGEVQSWGR 147 (406)
T ss_dssp SCEEEEEECSSEEEEEETTTTEEEEEECCGGGTTCSSSCCCEEEEEECGGGTTCCEEEEEECSSEEEEEETTSCEEEEEC
T ss_pred CCEEEEEeCcceEEEEECCCCEEEEEcCCCCcCCCCCCCCccccceEecccCCCCEEEEEEChhheEEEcCCCcEEEeCC
Confidence 3688888877744434444 5999994211 001111123357777766777777889999999976
Q ss_pred cCCCccccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcCCCCEEEEEeCCCcEEEEEccCC---
Q 047325 110 SPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCGLLYTASWDRTFKVWRISDS--- 186 (368)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~--- 186 (368)
....+.-...... ...+. .... -....|..++.. ..+.++-..+|.|..|-....
T Consensus 148 n~~GqLG~g~~~~-----~~~p~-------------~v~~--~~~~~i~~va~G--~~hs~alt~~G~v~~wG~n~~Gql 205 (406)
T 4d9s_A 148 NQNGQLGLGDTED-----SLVPQ-------------KIQA--FEGIRIKMVAAG--AEHTAAVTEDGDLYGWGWGRYGNL 205 (406)
T ss_dssp CTTSTTCSSSCCC-----EEEEE-------------ECGG--GTTCCEEEEEEC--SSEEEEEETTSCEEEEECCTTSTT
T ss_pred CCCccCCCCCCCC-----cccce-------------Eecc--cCCCcEEEEecC--CCeEEEEeCCCCEEEeeCCCCCCC
Confidence 5443221111000 00000 0000 012245555553 335555667888999864321
Q ss_pred -------eE-EEEeec-CCCceEEEEeCCCCeEEEEcCCCeEEEEEcCCCCCCcc-----cccceeec-cccccEEEEEE
Q 047325 187 -------KC-LESVSA-HDDAVNSVVSSSEGLIFTGSADGTVKVWKREQHGKGTK-----HSLAQTLL-KQECAVTALVV 251 (368)
Q Consensus 187 -------~~-~~~~~~-~~~~v~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~-----~~~~~~~~-~~~~~i~~~~~ 251 (368)
.. ...+.. ....|..++.... ..++-..+|.|+.|-.....+... ......+. .....|..++.
T Consensus 206 G~g~~~~~~~p~~v~~~~~~~i~~va~G~~-ht~~l~~~G~v~~wG~n~~GqlG~g~~~~~~~p~~v~~~~~~~v~~i~~ 284 (406)
T 4d9s_A 206 GLGDRTDRLVPERVTSTGGEKMSMVACGWR-HTISVSYSGALYTYGWSKYGQLGHGDLEDHLIPHKLEALSNSFISQISG 284 (406)
T ss_dssp CSSSSCCEEEEEECCCSTTCCEEEEEECSS-EEEEEETTCCEEEEECCTTSTTCSSSCCCEEEEEECGGGTTSCEEEEEE
T ss_pred CCCCCCCcCccEEecccCCceEEEEEECCC-cEEEEcCCCCEEEeeCCCCCCCCCCCCcCccccEEecccCCCCEEEEEe
Confidence 11 111111 2245666665444 344446789999997654332100 00011111 11234666655
Q ss_pred cCCCCEEEEecCCCcEEEEeCCCccc-----------cceeeeccceEEEEEEeCCCEEEEeeCCCeEEEEec
Q 047325 252 SSSRSIVYCGSSDGLVNFWEREKQLS-----------HGGVLKGHKLAVLCLAAAGKLVFSGSADKTICVWRR 313 (368)
Q Consensus 252 ~~~~~~l~~~~~dg~i~i~d~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~ 313 (368)
. ..+.+.-..||.|+.|-....-. +..........+..++.-....++-..||.|+.|=.
T Consensus 285 G--~~hs~alt~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~~~~v~~va~G~~hs~alt~~G~v~~wG~ 355 (406)
T 4d9s_A 285 G--WRHTMALTSDGKLYGWGWNKFGQVGVGNNLDQCSPVQVRFPDDQKVVQVSCGWRHTLAVTERNNVFAWGR 355 (406)
T ss_dssp C--SSEEEEEETTSCEEEEECCTTSTTCSSSSSCEEEEEEECCGGGCCEEEEEECSSEEEEEETTSCEEEEEC
T ss_pred c--CCEEEEEcCCCeEEEeeCCCCCCCCCCCCCCCccCEEEeccCCCcEEEEEeCCCeEEEEeCCCCEEEecC
Confidence 4 33444556789999996442111 111111123356677776666666778999999964
No 353
>4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A
Probab=90.38 E-value=7.4 Score=32.86 Aligned_cols=245 Identities=8% Similarity=0.057 Sum_probs=125.0
Q ss_pred CCcEEEEEecCCEEEEccCCCcEEEEcCCc-----------c--eecc-cCCCCCeeEEEEeCCEEEEEeCC-CeEEEEe
Q 047325 44 EGHIYSLAASKDLLYTGSDSKNIRVWKNLK-----------E--FCGF-KASSGLVKAIVISGEKIFTGHQD-GKIRVWK 108 (368)
Q Consensus 44 ~~~i~~~~~~~~~l~s~~~dg~i~iw~~~~-----------~--~~~~-~~~~~~v~~~~~~~~~l~s~~~d-g~i~vw~ 108 (368)
...|..++......+.-..||.|..|=... . .... ......|..++.-....+.-..| +.|..|-
T Consensus 15 ~~~v~~ia~G~~hs~al~~~g~v~~wG~n~~GqLG~g~~~~~~~P~~v~~l~~~~i~~va~G~~ht~al~~~gg~v~~wG 94 (406)
T 4d9s_A 15 PRKVLIISAGASHSVALLSGDIVCSWGRGEDGQLGHGDAEDRPSPTQLSALDGHQIVSVTCGADHTVAYSQSGMEVYSWG 94 (406)
T ss_dssp CCCEEEEEECSSEEEEEETTTEEEEEECCTTSTTCSSSCCCEEEEEECGGGTTSCEEEEEECSSEEEEEETTTTEEEEEE
T ss_pred ccceEEEecCCCeEEEEEeCCEEEEEeCCCCCCCCCCCcccCcCCEEecccCCCCEEEEEeCcceEEEEECCCCEEEEEc
Confidence 346788888777666666789999994211 0 0011 11233577777666665555666 4999997
Q ss_pred ecCCCccccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcCCCCEEEEEeCCCcEEEEEccCC-e
Q 047325 109 ISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCGLLYTASWDRTFKVWRISDS-K 187 (368)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~-~ 187 (368)
.....+.-.-.... ...+. +.. .-....|..++.. ..+.++-..||.|..|-.... +
T Consensus 95 ~n~~GqLG~g~~~~-----~~~p~-------------~v~--~l~~~~i~~ia~G--~~h~~alt~~G~v~~wG~n~~Gq 152 (406)
T 4d9s_A 95 WGDFGRLGHGNSSD-----LFTPL-------------PIK--ALHGIRIKQIACG--DSHCLAVTMEGEVQSWGRNQNGQ 152 (406)
T ss_dssp CCGGGTTCSSSCCC-----EEEEE-------------ECG--GGTTCCEEEEEEC--SSEEEEEETTSCEEEEECCTTST
T ss_pred CCCCcCCCCCCCCc-----cccce-------------Eec--ccCCCCEEEEEEC--hhheEEEcCCCcEEEeCCCCCcc
Confidence 54332211110000 00000 000 0022356666653 345566678899999965321 1
Q ss_pred ----------EEEEeec-CCCceEEEEeCCCCeEEEEcCCCeEEEEEcCCCCCC------cccccceeeccccccEEEEE
Q 047325 188 ----------CLESVSA-HDDAVNSVVSSSEGLIFTGSADGTVKVWKREQHGKG------TKHSLAQTLLKQECAVTALV 250 (368)
Q Consensus 188 ----------~~~~~~~-~~~~v~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~------~~~~~~~~~~~~~~~i~~~~ 250 (368)
....+.. ....|..++.... ..++-..+|.|+.|-.....+. ....+..........|..++
T Consensus 153 LG~g~~~~~~~p~~v~~~~~~~i~~va~G~~-hs~alt~~G~v~~wG~n~~GqlG~g~~~~~~~p~~v~~~~~~~i~~va 231 (406)
T 4d9s_A 153 LGLGDTEDSLVPQKIQAFEGIRIKMVAAGAE-HTAAVTEDGDLYGWGWGRYGNLGLGDRTDRLVPERVTSTGGEKMSMVA 231 (406)
T ss_dssp TCSSSCCCEEEEEECGGGTTCCEEEEEECSS-EEEEEETTSCEEEEECCTTSTTCSSSSCCEEEEEECCCSTTCCEEEEE
T ss_pred CCCCCCCCcccceEecccCCCcEEEEecCCC-eEEEEeCCCCEEEeeCCCCCCCCCCCCCCcCccEEecccCCceEEEEE
Confidence 1111211 2235677766544 4444567899999975543221 01111111111223466665
Q ss_pred EcCCCCEEEEecCCCcEEEEeCCCcccc-----------ceeeeccceEEEEEEeCCCEEEEeeCCCeEEEEec
Q 047325 251 VSSSRSIVYCGSSDGLVNFWEREKQLSH-----------GGVLKGHKLAVLCLAAAGKLVFSGSADKTICVWRR 313 (368)
Q Consensus 251 ~~~~~~~l~~~~~dg~i~i~d~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~ 313 (368)
.. ..+.+.-..+|.|+.|-....-.+ ..........+..++.-....++-..||.|+.|=.
T Consensus 232 ~G--~~ht~~l~~~G~v~~wG~n~~GqlG~g~~~~~~~p~~v~~~~~~~v~~i~~G~~hs~alt~~G~v~~wG~ 303 (406)
T 4d9s_A 232 CG--WRHTISVSYSGALYTYGWSKYGQLGHGDLEDHLIPHKLEALSNSFISQISGGWRHTMALTSDGKLYGWGW 303 (406)
T ss_dssp EC--SSEEEEEETTCCEEEEECCTTSTTCSSSCCCEEEEEECGGGTTSCEEEEEECSSEEEEEETTSCEEEEEC
T ss_pred EC--CCcEEEEcCCCCEEEeeCCCCCCCCCCCCcCccccEEecccCCCCEEEEEecCCEEEEEcCCCeEEEeeC
Confidence 54 334455567899999974421111 00111112346667766666666678999999954
No 354
>3mvd_K Regulator of chromosome condensation; protein-DNA complex, nucleosome core particle (NCP), NCP-CHR factor complex; HET: DNA; 2.90A {Drosophila melanogaster}
Probab=89.67 E-value=8.7 Score=32.60 Aligned_cols=243 Identities=7% Similarity=0.004 Sum_probs=125.5
Q ss_pred cEEEEEecCCEEEEccCCCcEEEEcCCc--c------------eecccCCCCCeeEEEEeCCEEEEEeCCCeEEEEee--
Q 047325 46 HIYSLAASKDLLYTGSDSKNIRVWKNLK--E------------FCGFKASSGLVKAIVISGEKIFTGHQDGKIRVWKI-- 109 (368)
Q Consensus 46 ~i~~~~~~~~~l~s~~~dg~i~iw~~~~--~------------~~~~~~~~~~v~~~~~~~~~l~s~~~dg~i~vw~~-- 109 (368)
.|..++......+.-..||.|..|-... + ....-.....|..++......+.-..||.|..|-.
T Consensus 76 ~v~~va~G~~h~~~l~~~G~v~~wG~n~~GqLG~~~~~~~~~~~P~~v~~~~~i~~va~G~~hs~al~~~G~v~~wG~~~ 155 (423)
T 3mvd_K 76 DAVDISAGGMHNLVLTKSGDIYSFGCNDEGALGRDTSEDGSESKPDLIDLPGKALCISAGDSHSACLLEDGRVFAWGSFR 155 (423)
T ss_dssp SEEEEEECSSEEEEEETTSCEEEEECCSSSTTCSCCCSTTSSSSCEECCCSSCEEEEEECSSEEEEEETTSCEEEEECEE
T ss_pred CceEEeeCCCeEEEEeCCCeEEEeECCCCcCCCCCCcCCccccCCeEEcCCCCEEEEEcCcCeEEEEeCCCeEEEEeCCC
Confidence 4778887777666777899999994321 0 00000123456677666777777889999999985
Q ss_pred cCCCccccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcCCCCEEEEEeCCCcEEEEEccCC---
Q 047325 110 SPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCGLLYTASWDRTFKVWRISDS--- 186 (368)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~--- 186 (368)
......-....... ..+ .. ......|..++... .+.++-..+|.|..|-....
T Consensus 156 n~~GqlG~~~~~~~-----~~p---------------~~--~~~~~~i~~va~G~--~hs~alt~~G~v~~wG~n~~GqL 211 (423)
T 3mvd_K 156 DSHGNMGLTIDGNK-----RTP---------------ID--LMEGTVCCSIASGA--DHLVILTTAGKVFTVGCAEQGQL 211 (423)
T ss_dssp CSSSEEESBTTBCE-----EEE---------------EE--SSTTCCEEEEEECS--SEEEEEETTSCEEEEECCTTSTT
T ss_pred CCCCCcCcCCCCCC-----cee---------------eE--ecCCCcEEEEecCC--CeEEEEecCCeEEEeeCCcCCcc
Confidence 32221111000000 000 00 01234566666543 35556667899999964321
Q ss_pred --------------------eEEEEeecCCCceEEEEeCCCCeEEEEcCCCeEEEEEcCCCCCCcc-----cccceeecc
Q 047325 187 --------------------KCLESVSAHDDAVNSVVSSSEGLIFTGSADGTVKVWKREQHGKGTK-----HSLAQTLLK 241 (368)
Q Consensus 187 --------------------~~~~~~~~~~~~v~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~-----~~~~~~~~~ 241 (368)
.+..........|..++......++.-..+|.|+.|-.....+... .........
T Consensus 212 G~~~~~~~~~~~~~~~~~~~~p~~v~~~~~~~v~~i~~g~~~~~~~~~~~g~v~~wG~n~~gqlg~~~~~~~~~~~p~~~ 291 (423)
T 3mvd_K 212 GRLSERSISGEGRRGKRDLLRPTQLIITRAKPFEAIWATNYCTFMRESQTQVIWATGLNNFKQLAHETKGKEFALTPIKT 291 (423)
T ss_dssp SSCCTTTTTSCSTTTTTTTSSCEEECCTTCCCEEEEEEETTEEEEEETTTCCEEEEEECTTCTTSSCCTTCSEEEEEEEE
T ss_pred CCCcccccccccccccccccCCeEEeecCCccEEEEEECCcEEEEEECCCCeEEEEeCCCCCcCCCCCCCCceeeeeEEc
Confidence 1111111122345555554333444446899999997654332110 000000011
Q ss_pred ccccEEEEEEcCCCCEEEEecCCCcEEEEeCCCcccc-----------ceeeeccceEEEEEEeCCCEEEEeeCCCeEEE
Q 047325 242 QECAVTALVVSSSRSIVYCGSSDGLVNFWEREKQLSH-----------GGVLKGHKLAVLCLAAAGKLVFSGSADKTICV 310 (368)
Q Consensus 242 ~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i 310 (368)
....|..++.. ..+.+.-..||.|+.|-....-.+ ......-...+..++......++-..||.|+.
T Consensus 292 ~~~~v~~ia~G--~~ht~alt~~G~v~~wG~n~~GqLG~g~~~~~~~~p~~v~~l~~~v~~ia~G~~hs~alt~~G~v~~ 369 (423)
T 3mvd_K 292 ELKDIRHIAGG--QHHTVILTTDLKCSVVGRPEYGRLGLGDVKDVVEKPTIVKKLTEKIVSVGCGEVCSYAVTIDGKLYS 369 (423)
T ss_dssp CCCSEEEEEEC--SSEEEEEETTCCEEEEECCGGGTTCSSSCCSCEEEEEECTTCCSCEEEEEEETTEEEEEETTSCEEE
T ss_pred CCCCeEEEEcc--cCeEEEEeCCCcEEEEECCCCCCCCCCCccccccCceEeccCCCCEEEEEcCCCeEEEEcCCCCEEE
Confidence 12346666554 344455567899999975321100 01111111256677766666555678999999
Q ss_pred EecC
Q 047325 311 WRRD 314 (368)
Q Consensus 311 w~~~ 314 (368)
|=..
T Consensus 370 wG~n 373 (423)
T 3mvd_K 370 WGSG 373 (423)
T ss_dssp EECC
T ss_pred ECCC
Confidence 9643
No 355
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=89.13 E-value=15 Score=35.11 Aligned_cols=40 Identities=23% Similarity=0.412 Sum_probs=34.3
Q ss_pred CCCEeEEEEcCCCCEEEEEeCCCcEEEEEccCCeEEEEee
Q 047325 154 SDAVSCMSLDQDCGLLYTASWDRTFKVWRISDSKCLESVS 193 (368)
Q Consensus 154 ~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~ 193 (368)
...+.++...++..++++-+.|+++|+|++.+++++.+..
T Consensus 235 ~~~~~~~~~~~~~~~lftl~~D~~LRiWsl~t~~~v~t~d 274 (950)
T 4gq2_M 235 PNTIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIE 274 (950)
T ss_dssp TTCEEEEEEETTTTEEEEEETTCEEEEEETTTTEEEEEEE
T ss_pred cceEEEEeecCCCcEEEEEECCCEEEEEECCCCCeEeeec
Confidence 3457778888888899999999999999999999887754
No 356
>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A
Probab=82.56 E-value=23 Score=30.53 Aligned_cols=109 Identities=14% Similarity=0.060 Sum_probs=60.2
Q ss_pred CceEEEEeCCCC--eEEEEcCCCeEEEEEcCCCCCCcccccc-eeec-----cccccEEEEEEcCC----CCEEEEecC-
Q 047325 197 DAVNSVVSSSEG--LIFTGSADGTVKVWKREQHGKGTKHSLA-QTLL-----KQECAVTALVVSSS----RSIVYCGSS- 263 (368)
Q Consensus 197 ~~v~~~~~~~~~--~l~~~~~dg~i~i~d~~~~~~~~~~~~~-~~~~-----~~~~~i~~~~~~~~----~~~l~~~~~- 263 (368)
.....|++.|++ .|+++...|.|++++...........-+ ..+. ..+.....++++|+ +.+.++-+.
T Consensus 14 ~~P~~~a~~pdG~~rl~V~er~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~f~~n~~lYv~yt~~ 93 (463)
T 2wg3_C 14 RQPVGALHSGDGSQRLFILEKEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPNYKKNGKLYVSYTTN 93 (463)
T ss_dssp SSEEEEECCSSSSCCEEEEETTTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTTHHHHCEEEEEEEEC
T ss_pred CCceEEEECCCCCeEEEEEeCCceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCCCCcCCCEEEEEEeCC
Confidence 345789999998 4888888999999975422100000000 0111 12567889999996 333333221
Q ss_pred -C----------CcEEEEeCCCc----------ccccee---eeccceEEEEEEeCCCEEEEeeCC
Q 047325 264 -D----------GLVNFWEREKQ----------LSHGGV---LKGHKLAVLCLAAAGKLVFSGSAD 305 (368)
Q Consensus 264 -d----------g~i~i~d~~~~----------~~~~~~---~~~~~~~~~~~~~~~~~l~~~~~d 305 (368)
+ ..|.-|.+... +.+... ...|...-+.|.|||.+.++.+..
T Consensus 94 ~~~~~~~~~~~~~~v~r~~~~~~~~~~~d~~~~~~i~~~~~~~~~H~g~~l~fgpDG~LYv~~Gd~ 159 (463)
T 2wg3_C 94 QERWAIGPHDHILRVVEYTVSRKNPHQVDLRTARVFLEVAELHRKHLGGQLLFGPDGFLYIILGDG 159 (463)
T ss_dssp CCSSCSSSSCEEEEEEEEEBCTTCTTSBCGGGCEEEEEEEESSSSSCEEEEEECTTSCEEEEECCT
T ss_pred CCCcccCCcccceEEEEEEEcCCCCCccCCCCceEEEEcCCCCCcccCCcEeECCCCcEEEEeCCC
Confidence 1 13444555321 111111 125777778899999877765543
No 357
>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A
Probab=82.25 E-value=11 Score=33.27 Aligned_cols=102 Identities=14% Similarity=0.021 Sum_probs=60.2
Q ss_pred ccEEEEEEcCCCCEEEEec-CCCcEEEEeCCCccc--------cc-----eeeeccceEEEEEEeCCCEEEEeeCCCeEE
Q 047325 244 CAVTALVVSSSRSIVYCGS-SDGLVNFWEREKQLS--------HG-----GVLKGHKLAVLCLAAAGKLVFSGSADKTIC 309 (368)
Q Consensus 244 ~~i~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~--------~~-----~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~ 309 (368)
.....+..+|||+++++++ .+.++.++|+++-.. +. ....+-...-+.|.++|....+-.-|..|.
T Consensus 323 ksPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e~GlGPlHt~Fd~~G~aYTtlfidSqvv 402 (638)
T 3sbq_A 323 KNPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPELGLGPLHTTFDGRGNAYTTLFIDSQVV 402 (638)
T ss_dssp SSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCBCCSCEEEEEECSSSEEEEEETTTTEEE
T ss_pred CCCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeeccCCCcccEEEECCCCceEeeeeecceEE
Confidence 4456788999999887755 678999999874211 00 111122222366777785556667899999
Q ss_pred EEecCCC--------ceeeeEeeeccccCeeEEE-----EecCCeeeec
Q 047325 310 VWRRDGA--------IHTCLSVLTGHTGPVKCLA-----VEEDRDSSSS 345 (368)
Q Consensus 310 iw~~~~~--------~~~~~~~~~~h~~~v~~l~-----~~~~~~~~~~ 345 (368)
.|+++.. ....+..+.-|-++-.-.+ -.++|++|.+
T Consensus 403 kWni~~a~~~~~g~~~~~v~~k~dv~YqpGH~~~~~get~~~dGk~lv~ 451 (638)
T 3sbq_A 403 KWNMEEAVRAYKGEKVNYIKQKLDVHYQPGHLHASLCETNEADGKWLVA 451 (638)
T ss_dssp EEEHHHHHHHHTTCCCCCEEEEEECSSCEEEEEETTTTSTTCCSCEEEE
T ss_pred EEeccHHHHHhcCccCCeeeeccccccCCcccccCCCccCCCCccEEEE
Confidence 9998642 1234555555554322221 2456665543
No 358
>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A
Probab=81.46 E-value=25 Score=30.27 Aligned_cols=109 Identities=6% Similarity=0.028 Sum_probs=60.7
Q ss_pred CCEeEEEEcCCCC-EEEEEeCCCcEEEEEccCC---eEEEEee---------cCCCceEEEEeCCC----CeEEEE-cC-
Q 047325 155 DAVSCMSLDQDCG-LLYTASWDRTFKVWRISDS---KCLESVS---------AHDDAVNSVVSSSE----GLIFTG-SA- 215 (368)
Q Consensus 155 ~~v~~~~~~~~~~-~l~~~~~d~~i~iwd~~~~---~~~~~~~---------~~~~~v~~~~~~~~----~~l~~~-~~- 215 (368)
..-+.|+|.|++. .|+++...|.|++++.... +.+..+. ........|+++|+ +.|++. +.
T Consensus 14 ~~P~~~a~~pdG~~rl~V~er~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~f~~n~~lYv~yt~~ 93 (463)
T 2wg3_C 14 RQPVGALHSGDGSQRLFILEKEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPNYKKNGKLYVSYTTN 93 (463)
T ss_dssp SSEEEEECCSSSSCCEEEEETTTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTTHHHHCEEEEEEEEC
T ss_pred CCceEEEECCCCCeEEEEEeCCceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCCCCcCCCEEEEEEeCC
Confidence 4567899999986 5666778899999975422 1222221 11356788999997 433332 21
Q ss_pred -C----------CeEEEEEcCCCCC--C--cccccceeec--cccccEEEEEEcCCCCEEEEecC
Q 047325 216 -D----------GTVKVWKREQHGK--G--TKHSLAQTLL--KQECAVTALVVSSSRSIVYCGSS 263 (368)
Q Consensus 216 -d----------g~i~i~d~~~~~~--~--~~~~~~~~~~--~~~~~i~~~~~~~~~~~l~~~~~ 263 (368)
+ ..|.-|.+..... . .....+.... ........|+|.||+.+.++.+.
T Consensus 94 ~~~~~~~~~~~~~~v~r~~~~~~~~~~~d~~~~~~i~~~~~~~~~H~g~~l~fgpDG~LYv~~Gd 158 (463)
T 2wg3_C 94 QERWAIGPHDHILRVVEYTVSRKNPHQVDLRTARVFLEVAELHRKHLGGQLLFGPDGFLYIILGD 158 (463)
T ss_dssp CCSSCSSSSCEEEEEEEEEBCTTCTTSBCGGGCEEEEEEEESSSSSCEEEEEECTTSCEEEEECC
T ss_pred CCCcccCCcccceEEEEEEEcCCCCCccCCCCceEEEEcCCCCCcccCCcEeECCCCcEEEEeCC
Confidence 1 1455566643211 0 0111111111 12234678999999987666543
No 359
>3f7f_A Nucleoporin NUP120; nuclear pore complex, macromolecular assembly, membrane coat, nucleocytoplasmic transport, beta-propeller; 2.60A {Saccharomyces cerevisiae} PDB: 3h7n_A 3hxr_A
Probab=79.00 E-value=15 Score=33.44 Aligned_cols=38 Identities=13% Similarity=0.347 Sum_probs=30.6
Q ss_pred CCEeEEEEcCCCCEEEEEeCCCcEEEEEccCCeEEEEeec
Q 047325 155 DAVSCMSLDQDCGLLYTASWDRTFKVWRISDSKCLESVSA 194 (368)
Q Consensus 155 ~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~ 194 (368)
..|.++.+ +..++++-+.|..+|+||+.+++++....-
T Consensus 222 ~~Is~~~~--~~~fLftL~~Dh~LRiWsL~t~~lv~t~DL 259 (729)
T 3f7f_A 222 SVISCKLF--HERYLIVLTQNCHLKIWDLTSFTLIQDYDM 259 (729)
T ss_dssp CEEEEEEE--TTTEEEEEETTCEEEEEETTTTEEEEEEET
T ss_pred ceEEEecc--CCcEEEEEEcCCeEEEEEcCCCceEEeecc
Confidence 34565555 367999999999999999999998877654
No 360
>3mvd_K Regulator of chromosome condensation; protein-DNA complex, nucleosome core particle (NCP), NCP-CHR factor complex; HET: DNA; 2.90A {Drosophila melanogaster}
Probab=77.72 E-value=31 Score=29.14 Aligned_cols=241 Identities=12% Similarity=0.017 Sum_probs=119.5
Q ss_pred EEEecCCEEEEccCCCcEEEEcCCc-----------c--eecccCCCCCeeEEEEeCCEEEEEeCCCeEEEEeecCCCcc
Q 047325 49 SLAASKDLLYTGSDSKNIRVWKNLK-----------E--FCGFKASSGLVKAIVISGEKIFTGHQDGKIRVWKISPKNQS 115 (368)
Q Consensus 49 ~~~~~~~~l~s~~~dg~i~iw~~~~-----------~--~~~~~~~~~~v~~~~~~~~~l~s~~~dg~i~vw~~~~~~~~ 115 (368)
.++...+.-+.-..||.|..|=... . ..........|..|+.-+...+.-..||.|..|-.....+.
T Consensus 28 ~ia~g~~~~~~l~~~G~v~~wG~n~~GqLG~g~~~~~~~~p~~v~~l~~v~~va~G~~h~~~l~~~G~v~~wG~n~~GqL 107 (423)
T 3mvd_K 28 RIAFHLELPKRRTVLGNVLVCGNGDVGQLGLGEDILERKRLSPVAGIPDAVDISAGGMHNLVLTKSGDIYSFGCNDEGAL 107 (423)
T ss_dssp -CCCCCCCCCCCCCCEEEEEEEECTTSTTCSCSSCCEEEEEEECCSCSSEEEEEECSSEEEEEETTSCEEEEECCSSSTT
T ss_pred EEecCCccceeecCCCcEEEEeCCCCCCCCCCCCCccCcCCeEccCCCCceEEeeCCCeEEEEeCCCeEEEeECCCCcCC
Confidence 4555545444556778888882110 0 00111122346677666778888889999999976554322
Q ss_pred ccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcCCCCEEEEEeCCCcEEEEEc--c-CCeE----
Q 047325 116 VHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCGLLYTASWDRTFKVWRI--S-DSKC---- 188 (368)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~--~-~~~~---- 188 (368)
-.......... . +.. ......|..++... .+.++-..||.|..|-. . .++.
T Consensus 108 G~~~~~~~~~~--------~----------P~~--v~~~~~i~~va~G~--~hs~al~~~G~v~~wG~~~n~~GqlG~~~ 165 (423)
T 3mvd_K 108 GRDTSEDGSES--------K----------PDL--IDLPGKALCISAGD--SHSACLLEDGRVFAWGSFRDSHGNMGLTI 165 (423)
T ss_dssp CSCCCSTTSSS--------S----------CEE--CCCSSCEEEEEECS--SEEEEEETTSCEEEEECEECSSSEEESBT
T ss_pred CCCCcCCcccc--------C----------CeE--EcCCCCEEEEEcCc--CeEEEEeCCCeEEEEeCCCCCCCCcCcCC
Confidence 11111000000 0 000 00123455555433 35555567888888874 2 2221
Q ss_pred -----EEEeecCCCceEEEEeCCCCeEEEEcCCCeEEEEEcCCCCCCcc-----------------cccceeeccccccE
Q 047325 189 -----LESVSAHDDAVNSVVSSSEGLIFTGSADGTVKVWKREQHGKGTK-----------------HSLAQTLLKQECAV 246 (368)
Q Consensus 189 -----~~~~~~~~~~v~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~-----------------~~~~~~~~~~~~~i 246 (368)
..........|..++...+ ..++-..+|.|+.|=.....+... ..+..........|
T Consensus 166 ~~~~~~p~~~~~~~~i~~va~G~~-hs~alt~~G~v~~wG~n~~GqLG~~~~~~~~~~~~~~~~~~~~p~~v~~~~~~~v 244 (423)
T 3mvd_K 166 DGNKRTPIDLMEGTVCCSIASGAD-HLVILTTAGKVFTVGCAEQGQLGRLSERSISGEGRRGKRDLLRPTQLIITRAKPF 244 (423)
T ss_dssp TBCEEEEEESSTTCCEEEEEECSS-EEEEEETTSCEEEEECCTTSTTSSCCTTTTTSCSTTTTTTTSSCEEECCTTCCCE
T ss_pred CCCCceeeEecCCCcEEEEecCCC-eEEEEecCCeEEEeeCCcCCccCCCcccccccccccccccccCCeEEeecCCccE
Confidence 1111112345677766544 444456789999997543322100 01111111222345
Q ss_pred EEEEEcCCCCEEEEecCCCcEEEEeCCCccccc-------e---eeeccceEEEEEEeCCCEEEEeeCCCeEEEEec
Q 047325 247 TALVVSSSRSIVYCGSSDGLVNFWEREKQLSHG-------G---VLKGHKLAVLCLAAAGKLVFSGSADKTICVWRR 313 (368)
Q Consensus 247 ~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~-------~---~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~ 313 (368)
..++.... ..++.-..+|.|+.|-....-.+. . ........+..++......++-..||.|+.|-.
T Consensus 245 ~~i~~g~~-~~~~~~~~~g~v~~wG~n~~gqlg~~~~~~~~~~~p~~~~~~~v~~ia~G~~ht~alt~~G~v~~wG~ 320 (423)
T 3mvd_K 245 EAIWATNY-CTFMRESQTQVIWATGLNNFKQLAHETKGKEFALTPIKTELKDIRHIAGGQHHTVILTTDLKCSVVGR 320 (423)
T ss_dssp EEEEEETT-EEEEEETTTCCEEEEEECTTCTTSSCCTTCSEEEEEEEECCCSEEEEEECSSEEEEEETTCCEEEEEC
T ss_pred EEEEECCc-EEEEEECCCCeEEEEeCCCCCcCCCCCCCCceeeeeEEcCCCCeEEEEcccCeEEEEeCCCcEEEEEC
Confidence 55555422 233333688999999644211110 0 000112345667776666667778999999954
No 361
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=77.21 E-value=10 Score=37.13 Aligned_cols=39 Identities=23% Similarity=0.419 Sum_probs=32.9
Q ss_pred CCEeEEEEcCCCCEEEEEeCCCcEEEEEccCCeEEEEee
Q 047325 155 DAVSCMSLDQDCGLLYTASWDRTFKVWRISDSKCLESVS 193 (368)
Q Consensus 155 ~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~ 193 (368)
..+.+++..++..++++-+.|+++|+|++.+++++.+..
T Consensus 238 ~~~vs~~~~~~~~~lftL~~D~~LRiWsl~t~~~v~t~D 276 (1139)
T 4fhn_B 238 NTIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIE 276 (1139)
T ss_dssp TCBSCCEEETTTTEEEEEBTTCEEEEEETTTTEEEEEEE
T ss_pred ceeEEeeccCCccEEEEEeCCCEEEEEECCCCCeEEeec
Confidence 355566777888899999999999999999999988754
No 362
>3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase, isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis}
Probab=76.85 E-value=29 Score=28.26 Aligned_cols=165 Identities=13% Similarity=0.090 Sum_probs=89.4
Q ss_pred CCCeeEEEE-e----CCEEEEEeCCCeEEEEeecCCCccccccCCccccceeeeeccCCCCceeEecccceeeeeecCCC
Q 047325 82 SGLVKAIVI-S----GEKIFTGHQDGKIRVWKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDA 156 (368)
Q Consensus 82 ~~~v~~~~~-~----~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (368)
...|.++.. . ..+++..+.+|.++--.+..-..... .+ . . ...+. -.+.
T Consensus 94 ~e~i~~~~~~~~~~~e~~~v~~T~~G~iKr~~l~~~~~~~r--~G-~------~----------------~i~lk-e~D~ 147 (327)
T 3uc1_A 94 EERIAQVIQIRGYTDAPYLVLATRNGLVKKSKLTDFDSNRS--GG-I------V----------------AVNLR-DNDE 147 (327)
T ss_dssp TCCEEEEEEESSTTSSSEEEEEETTSEEEEEEGGGGCCCCS--SC-E------E----------------SCBCC-TTCC
T ss_pred CCEEEEEEEeccCCCCCEEEEEcCCCEEEEeEHHHhhcccc--Cc-e------E----------------EEEEC-CCCE
Confidence 445555543 2 56899999999999888764322111 00 0 0 00000 2344
Q ss_pred EeEEEEcCCCCEEEEEeCCCcEEEEEcc--C---------CeEEEEeecCCCceEEEEeCCCC-eEEEEcCCCeEEEEEc
Q 047325 157 VSCMSLDQDCGLLYTASWDRTFKVWRIS--D---------SKCLESVSAHDDAVNSVVSSSEG-LIFTGSADGTVKVWKR 224 (368)
Q Consensus 157 v~~~~~~~~~~~l~~~~~d~~i~iwd~~--~---------~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~dg~i~i~d~ 224 (368)
+..+........++..+..|.+..+... . |.....+. ....|.++...+++ .++..+..|.++.-.+
T Consensus 148 lv~~~~~~~~d~ill~T~~G~~~rf~~~~~eip~~gr~a~Gv~~i~L~-~~d~Vv~~~~~~~~~~ll~~T~~G~~Krt~l 226 (327)
T 3uc1_A 148 LVGAVLCSAGDDLLLVSANGQSIRFSATDEALRPMGRATSGVQGMRFN-IDDRLLSLNVVREGTYLLVATSGGYAKRTAI 226 (327)
T ss_dssp EEEEEEECTTCEEEEEETTSEEEEEECCTTTSCCCCTTSBCEESSCCC-TTCCEEEEEECCTTCEEEEEETTSEEEEEEG
T ss_pred EEEEEEecCCCEEEEEECCCeEEEEECcccccCcCCcCCCCeeeecCC-CCCEEEEEEEECCCCEEEEEeCCCcEEEEEH
Confidence 5555555555678888888988888765 2 12222233 23456666554444 8889999999998887
Q ss_pred CCCCCC---cccccceeeccccccEEEEEEcCCCCEEEEecCCCcEEEEeCC
Q 047325 225 EQHGKG---TKHSLAQTLLKQECAVTALVVSSSRSIVYCGSSDGLVNFWERE 273 (368)
Q Consensus 225 ~~~~~~---~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~ 273 (368)
...... ........+....+.+..+....+...++..+.+|.+.-++..
T Consensus 227 ~e~~~~~R~~~G~~~~~l~~~~d~lv~~~~~~~~~~i~l~T~~G~~ir~~~~ 278 (327)
T 3uc1_A 227 EEYPVQGRGGKGVLTVMYDRRRGRLVGALIVDDDSELYAVTSGGGVIRTAAR 278 (327)
T ss_dssp GGSCBCCTTSCCEESSCCCTTTCSEEEEEEECTTCEEEEEEGGGCEEEEEGG
T ss_pred HHccccCcCCCcEEEEEecCCCCeEEEEEEeCCCccEEEEcCCCeEEEEehh
Confidence 543211 0111111222212334444433344556666667777666654
No 363
>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}
Probab=68.10 E-value=51 Score=27.38 Aligned_cols=66 Identities=9% Similarity=0.084 Sum_probs=34.7
Q ss_pred CCEeEEEEcCC-CCEEEEEeCCCcEEEEEccCCeEEEEeec-----C--------CCceEEEEeCCC--CeEEEEcCCCe
Q 047325 155 DAVSCMSLDQD-CGLLYTASWDRTFKVWRISDSKCLESVSA-----H--------DDAVNSVVSSSE--GLIFTGSADGT 218 (368)
Q Consensus 155 ~~v~~~~~~~~-~~~l~~~~~d~~i~iwd~~~~~~~~~~~~-----~--------~~~v~~~~~~~~--~~l~~~~~dg~ 218 (368)
..+.+|.++|. ...++.+..++.|...+ ..++.-..+.. + ...+.++.+.|. +.++++...+
T Consensus 177 ~~i~~i~~d~~~~~~l~vg~~~ggl~~s~-DgG~tW~~~~~~~~~~~~p~~~~~~g~~~~~i~~~~~~~~~l~vg~~~g- 254 (394)
T 3b7f_A 177 PKMHSILVDPRDPKHLYIGMSSGGVFEST-DAGTDWKPLNRGCAANFLPDPNVEFGHDPHCVVQHPAAPDILYQQNHCG- 254 (394)
T ss_dssp CEEEEEEECTTCTTCEEEEEETBEEEEES-STTSSCEECCTTCCCTTSSSSSSSSCBCEEEEEECSSSTTEEEEEETTE-
T ss_pred CceeEEEECCCCCCEEEEEECCCCEEEEC-CCCCCceECCCCccccccCCCccccCcceeEEEECCCCCCEEEEEcCCe-
Confidence 45788999873 44555555445444432 22222222211 0 124788998886 4666666544
Q ss_pred EEEE
Q 047325 219 VKVW 222 (368)
Q Consensus 219 i~i~ 222 (368)
|...
T Consensus 255 l~~s 258 (394)
T 3b7f_A 255 IYRM 258 (394)
T ss_dssp EEEE
T ss_pred EEEe
Confidence 4443
No 364
>3no0_A DNA gyrase subunit A; DNA topology, topoisomerase, C-terminal DO gyrase, DNA binding protein, isomerase; HET: DNA GOL; 1.30A {Aquifex aeolicus}
Probab=67.87 E-value=43 Score=26.40 Aligned_cols=158 Identities=15% Similarity=0.094 Sum_probs=87.3
Q ss_pred CCCEeEEEEcC-CCCEEEEEeCCCcEEEEEccCC------eEEEEeecCCCceEEEEeC-CCCeEEEEcCCCeEEEEEcC
Q 047325 154 SDAVSCMSLDQ-DCGLLYTASWDRTFKVWRISDS------KCLESVSAHDDAVNSVVSS-SEGLIFTGSADGTVKVWKRE 225 (368)
Q Consensus 154 ~~~v~~~~~~~-~~~~l~~~~~d~~i~iwd~~~~------~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~dg~i~i~d~~ 225 (368)
...|..+.... +...++..+.+|.++-..+... .....++.. ..+..+... .+..++..+.+|.+..++..
T Consensus 67 ~e~i~~v~~~~~~~~~~v~~T~~G~iKr~~l~~~~~~~~G~~~i~lkeg-D~l~~~~~~~~~~~ill~T~~G~~~r~~~~ 145 (276)
T 3no0_A 67 EEKIVGAFIREKFGNRLLLATKKGYVKKIPLAEFEYKAQGMPIIKLTEG-DEVVSIASSVDETHILLFTKKGRVARFSVR 145 (276)
T ss_dssp TCCEEEEEEGGGSCSEEEEEETTSEEEEEEGGGTTTCSTTEECSCCCTT-CCEEEEEECCSSCEEEEEETTSEEEEEEGG
T ss_pred CCEEEEEECCcCCCCEEEEEeCCCEEEEEEHHHhhhhcCCeEEEecCCC-CEEEEEEEeCCCCEEEEEECCCEEEEEEhh
Confidence 34555554321 4678999999999999987553 222334433 344444333 33378888899998888764
Q ss_pred CCCC---CcccccceeeccccccEEEEEEcCCCCEEEEecCCCcEEEEeCCCccccc------eeeeccceEEEEEE-e-
Q 047325 226 QHGK---GTKHSLAQTLLKQECAVTALVVSSSRSIVYCGSSDGLVNFWEREKQLSHG------GVLKGHKLAVLCLA-A- 294 (368)
Q Consensus 226 ~~~~---~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~------~~~~~~~~~~~~~~-~- 294 (368)
.-.. .........+.. ...|..+...+++..++..+..|.++...+..-.... ..+ .....+.... .
T Consensus 146 eip~~gR~a~Gv~~i~L~~-~d~vv~~~~~~~~~~ll~~T~~G~~kr~~~~e~~~~~R~gkGv~~i-~~~~~lv~~~~~~ 223 (276)
T 3no0_A 146 EVPPSTPGARGVQGIKLEK-NDETSGLRIWNGEPYLLVITAKGRVKKISHEEIPKTNRGVKGTEVS-GTKDTLVDLIPIK 223 (276)
T ss_dssp GSCBCCTTCCCEECCCCCT-TCCEEEEEEESSCSEEEEEETTSCEEEEEGGGSCCCCTTCCCEECC-CSSSCEEEEEEES
T ss_pred hCCCcCCCCCCEEEEccCC-CCEEEEEEEeCCCCEEEEEeCCCcEEEeEHHHcccCCCCCcceEEE-cCCCcEEEEEEeC
Confidence 3211 111111112222 3456666555566788888999999888765321110 011 1122232222 2
Q ss_pred CCCEEEEeeCCCeEEE--EecC
Q 047325 295 AGKLVFSGSADKTICV--WRRD 314 (368)
Q Consensus 295 ~~~~l~~~~~dg~i~i--w~~~ 314 (368)
+...++..+.+|.+.. ++.+
T Consensus 224 ~~~~i~~~t~~G~~ir~~~~~~ 245 (276)
T 3no0_A 224 EEVELLITTKNGKAFYDKINQK 245 (276)
T ss_dssp SEEEEEEEETTSCEEEEEEEGG
T ss_pred CCCEEEEEcCCCeEEEeeeCHH
Confidence 3445666777888777 7654
No 365
>3no0_A DNA gyrase subunit A; DNA topology, topoisomerase, C-terminal DO gyrase, DNA binding protein, isomerase; HET: DNA GOL; 1.30A {Aquifex aeolicus}
Probab=66.90 E-value=45 Score=26.28 Aligned_cols=211 Identities=11% Similarity=0.133 Sum_probs=109.8
Q ss_pred CceeeeccCcC---CcEEEEEe--cCCEEEEccCCCcEEEEcC---Ccc-eecccCCCCCeeEEEEe---CCEEEEEeCC
Q 047325 34 NGLIGSLVREE---GHIYSLAA--SKDLLYTGSDSKNIRVWKN---LKE-FCGFKASSGLVKAIVIS---GEKIFTGHQD 101 (368)
Q Consensus 34 ~~~~~~~~~h~---~~i~~~~~--~~~~l~s~~~dg~i~iw~~---~~~-~~~~~~~~~~v~~~~~~---~~~l~s~~~d 101 (368)
...++...+|. +.+..+.. ..+.|+.-+.+|.++--.+ ... ...+......|.++... ..+++..+.+
T Consensus 10 ~Gwir~~~g~~~~gD~~~~~~~~~t~~~ll~fT~~G~v~~~~~~~lp~~~~~~ll~~~e~i~~v~~~~~~~~~~v~~T~~ 89 (276)
T 3no0_A 10 DGSIIPVEELPLEKAPVVNILRVPFTEGLFLVSNRGRVYWIAGSQALQGSKVSLKSREEKIVGAFIREKFGNRLLLATKK 89 (276)
T ss_dssp TSEEEEGGGCCSSCCCEEEEEEEETTSCEEEEETTSEEEEECSHHHHTSEECCCSSTTCCEEEEEEGGGSCSEEEEEETT
T ss_pred CceeeeccCCCCCCCeEEEEEEECCCCEEEEEcCCCeEEEEEhhhCccCcccccCCCCCEEEEEECCcCCCCEEEEEeCC
Confidence 34444555553 34554433 2345555666776655332 211 00122234556665433 4689999999
Q ss_pred CeEEEEeecCCCccccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcCCCCEEEEEeCCCcEEEE
Q 047325 102 GKIRVWKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCGLLYTASWDRTFKVW 181 (368)
Q Consensus 102 g~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iw 181 (368)
|.++-..+..-. .. ..+ .. .. .+ .-.+.+..+........++..+..|.+..+
T Consensus 90 G~iKr~~l~~~~-~~--~~G-~~------~i----------------~l-kegD~l~~~~~~~~~~~ill~T~~G~~~r~ 142 (276)
T 3no0_A 90 GYVKKIPLAEFE-YK--AQG-MP------II----------------KL-TEGDEVVSIASSVDETHILLFTKKGRVARF 142 (276)
T ss_dssp SEEEEEEGGGTT-TC--STT-EE------CS----------------CC-CTTCCEEEEEECCSSCEEEEEETTSEEEEE
T ss_pred CEEEEEEHHHhh-hh--cCC-eE------EE----------------ec-CCCCEEEEEEEeCCCCEEEEEECCCEEEEE
Confidence 999999876543 11 000 00 00 00 023455555555556678888889998888
Q ss_pred EccC---------CeEEEEeecCCCceEEEE-eCCCCeEEEEcCCCeEEEEEcCCCCCCccc-ccceeeccccccEEEEE
Q 047325 182 RISD---------SKCLESVSAHDDAVNSVV-SSSEGLIFTGSADGTVKVWKREQHGKGTKH-SLAQTLLKQECAVTALV 250 (368)
Q Consensus 182 d~~~---------~~~~~~~~~~~~~v~~~~-~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~-~~~~~~~~~~~~i~~~~ 250 (368)
+... |.....+.. ...|..+. ..++..++..+..|.++...+......... .-...+ ...+.+..+.
T Consensus 143 ~~~eip~~gR~a~Gv~~i~L~~-~d~vv~~~~~~~~~~ll~~T~~G~~kr~~~~e~~~~~R~gkGv~~i-~~~~~lv~~~ 220 (276)
T 3no0_A 143 SVREVPPSTPGARGVQGIKLEK-NDETSGLRIWNGEPYLLVITAKGRVKKISHEEIPKTNRGVKGTEVS-GTKDTLVDLI 220 (276)
T ss_dssp EGGGSCBCCTTCCCEECCCCCT-TCCEEEEEEESSCSEEEEEETTSCEEEEEGGGSCCCCTTCCCEECC-CSSSCEEEEE
T ss_pred EhhhCCCcCCCCCCEEEEccCC-CCEEEEEEEeCCCCEEEEEeCCCcEEEeEHHHcccCCCCCcceEEE-cCCCcEEEEE
Confidence 7632 222223333 34455544 444448888899999998887543221110 011111 2233344443
Q ss_pred EcCCCCEEEEecCCCcEEE--EeCC
Q 047325 251 VSSSRSIVYCGSSDGLVNF--WERE 273 (368)
Q Consensus 251 ~~~~~~~l~~~~~dg~i~i--~d~~ 273 (368)
...+...++..+.+|.+.. ++..
T Consensus 221 ~~~~~~~i~~~t~~G~~ir~~~~~~ 245 (276)
T 3no0_A 221 PIKEEVELLITTKNGKAFYDKINQK 245 (276)
T ss_dssp EESSEEEEEEEETTSCEEEEEEEGG
T ss_pred EeCCCCEEEEEcCCCeEEEeeeCHH
Confidence 3333445666667777776 7654
No 366
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=66.49 E-value=39 Score=32.32 Aligned_cols=35 Identities=9% Similarity=0.062 Sum_probs=29.6
Q ss_pred ccEEEEEEcCCCCEEEEecCCCcEEEEeCCCcccc
Q 047325 244 CAVTALVVSSSRSIVYCGSSDGLVNFWEREKQLSH 278 (368)
Q Consensus 244 ~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~ 278 (368)
..+.+++..++..++++-+.|+++++|++.++...
T Consensus 236 ~~~~~~~~~~~~~~lftl~~D~~LRiWsl~t~~~v 270 (950)
T 4gq2_M 236 NTIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCV 270 (950)
T ss_dssp TCEEEEEEETTTTEEEEEETTCEEEEEETTTTEEE
T ss_pred ceEEEEeecCCCcEEEEEECCCEEEEEECCCCCeE
Confidence 35677788888899999999999999999887654
No 367
>3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A*
Probab=64.81 E-value=61 Score=27.04 Aligned_cols=161 Identities=7% Similarity=0.143 Sum_probs=88.6
Q ss_pred cEEEEEccCC--eEEEEeecC------CCceEEEEeC---C-----CCeE-EEEcCCCeEEEEEcCCCCCCcccccce--
Q 047325 177 TFKVWRISDS--KCLESVSAH------DDAVNSVVSS---S-----EGLI-FTGSADGTVKVWKREQHGKGTKHSLAQ-- 237 (368)
Q Consensus 177 ~i~iwd~~~~--~~~~~~~~~------~~~v~~~~~~---~-----~~~l-~~~~~dg~i~i~d~~~~~~~~~~~~~~-- 237 (368)
.|.+||+.+. +.++++.-. ...+..+.+. + ++++ ++=...+.|.++|+.++.. .+...
T Consensus 124 kLv~~DL~t~~~~li~~y~~p~~~~~~~S~l~di~VD~~~~~~~c~~~~aYItD~~~~gLIVydl~~~~s---wRv~~~~ 200 (381)
T 3q6k_A 124 AIVAYDLKQPNYPEVVRYYFPTRLVEKPTYFGGFAVDVANPKGDCSETFVYITNFLRGALFIYDHKKQDS---WNVTHPT 200 (381)
T ss_dssp EEEEEESSSTTCCEEEEEECCGGGCCCGGGEEEEEEEESCTTTTSCSEEEEEEETTTTEEEEEETTTTEE---EEEECGG
T ss_pred eEEEEECCCCCceeEEEEECCHHhcccCCccceEEEecccCCCCCCccEEEEEcCCCCcEEEEECCCCcE---EEEccCC
Confidence 6888999998 888777532 3456677665 2 2343 3434578899999987532 11110
Q ss_pred ---------eeccc----cccEEEEEEcCC----CCEEEEecCCCcEEEEeCCC-----ccc--cceeee--c--cceEE
Q 047325 238 ---------TLLKQ----ECAVTALVVSSS----RSIVYCGSSDGLVNFWEREK-----QLS--HGGVLK--G--HKLAV 289 (368)
Q Consensus 238 ---------~~~~~----~~~i~~~~~~~~----~~~l~~~~~dg~i~i~d~~~-----~~~--~~~~~~--~--~~~~~ 289 (368)
...+. ...+..|+++|+ ++.|.-....+. ++|.+.+ ... ....+. + .....
T Consensus 201 ~~pd~~~~~~i~G~~~~~~~Gi~gIaLsp~~~~~~~~LYf~plss~-~ly~V~T~~L~~~~~~~~v~~~G~kg~~s~~~~ 279 (381)
T 3q6k_A 201 FKAERPTKFDYGGKEYEFKAGIFGITLGDRDSEGNRPAYYLAGSAI-KVYSVNTKELKQKGGKLNPELLGNRGKYNDAIA 279 (381)
T ss_dssp GSCCSCEEEEETTEEEEECCCEEEEEECCCCTTSCCEEEEEESSCS-EEEEEEHHHHSSTTCCCCCEEEEECCTTCCEEE
T ss_pred CccccCcceEECCEEeEeccCceEEEecCCcCCCCeEEEEEECCCC-cEEEEEHHHhhCcchhhceEEeeecCCCCCcce
Confidence 01111 247889999997 677776655442 3443321 111 011111 1 11222
Q ss_pred EEEE-eCCCEEEEeeCCCeEEEEecCC-C----ceeeeEeeeccccCeeEEEEecCCee
Q 047325 290 LCLA-AAGKLVFSGSADKTICVWRRDG-A----IHTCLSVLTGHTGPVKCLAVEEDRDS 342 (368)
Q Consensus 290 ~~~~-~~~~~l~~~~~dg~i~iw~~~~-~----~~~~~~~~~~h~~~v~~l~~~~~~~~ 342 (368)
.++. .+|.++++--..+.|..|+... . ....+..- ..-..+.++.+.++|.+
T Consensus 280 ~~~D~~~G~ly~~~~~~~aI~~w~~~~~~~~~~n~~~l~~d-~~l~~pd~~~i~~~g~L 337 (381)
T 3q6k_A 280 LAYDPKTKVIFFAEANTKQVSCWNTQKMPLRMKNTDVVYTS-SRFVFGTDISVDSKGGL 337 (381)
T ss_dssp EEECTTTCEEEEEESSSSEEEEEETTSCSBCGGGEEEEEEC-TTCCSEEEEEECTTSCE
T ss_pred EEEeCCCCeEEEEeccCCeEEEEeCCCCccccCceEEEEEC-CCccccCeEEECCCCeE
Confidence 4444 3466677777788999998765 2 11222211 12335778888777764
No 368
>3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A*
Probab=63.39 E-value=65 Score=26.87 Aligned_cols=117 Identities=10% Similarity=0.151 Sum_probs=63.6
Q ss_pred CCEeEEEEc---CC----CCEEEEEe-CCCcEEEEEccCCeEEEEeec----C--------------CCceEEEEeCCC-
Q 047325 155 DAVSCMSLD---QD----CGLLYTAS-WDRTFKVWRISDSKCLESVSA----H--------------DDAVNSVVSSSE- 207 (368)
Q Consensus 155 ~~v~~~~~~---~~----~~~l~~~~-~d~~i~iwd~~~~~~~~~~~~----~--------------~~~v~~~~~~~~- 207 (368)
..+..+.+. |+ +.+++.+. ..+.|.++|+.+++.-+.+.. . ...+..|+.+|+
T Consensus 152 S~l~di~VD~~~~~~~c~~~~aYItD~~~~gLIVydl~~~~swRv~~~~~~pd~~~~~~i~G~~~~~~~Gi~gIaLsp~~ 231 (381)
T 3q6k_A 152 TYFGGFAVDVANPKGDCSETFVYITNFLRGALFIYDHKKQDSWNVTHPTFKAERPTKFDYGGKEYEFKAGIFGITLGDRD 231 (381)
T ss_dssp GGEEEEEEEESCTTTTSCSEEEEEEETTTTEEEEEETTTTEEEEEECGGGSCCSCEEEEETTEEEEECCCEEEEEECCCC
T ss_pred CccceEEEecccCCCCCCccEEEEEcCCCCcEEEEECCCCcEEEEccCCCccccCcceEECCEEeEeccCceEEEecCCc
Confidence 456677776 22 34444444 467899999998876554421 0 135677777776
Q ss_pred ---C-eEEEEc-CCCeEEEEE---cCCCCCCcccccceeec--cccccEEEEEEc-CCCCEEEEecCCCcEEEEeCCC
Q 047325 208 ---G-LIFTGS-ADGTVKVWK---REQHGKGTKHSLAQTLL--KQECAVTALVVS-SSRSIVYCGSSDGLVNFWEREK 274 (368)
Q Consensus 208 ---~-~l~~~~-~dg~i~i~d---~~~~~~~~~~~~~~~~~--~~~~~i~~~~~~-~~~~~l~~~~~dg~i~i~d~~~ 274 (368)
+ .|.-.. ....+.--. ++.... ....+.+. +....-..+++. .+|.++++--....|..|+..+
T Consensus 232 ~~~~~~LYf~plss~~ly~V~T~~L~~~~~---~~~v~~~G~kg~~s~~~~~~~D~~~G~ly~~~~~~~aI~~w~~~~ 306 (381)
T 3q6k_A 232 SEGNRPAYYLAGSAIKVYSVNTKELKQKGG---KLNPELLGNRGKYNDAIALAYDPKTKVIFFAEANTKQVSCWNTQK 306 (381)
T ss_dssp TTSCCEEEEEESSCSEEEEEEHHHHSSTTC---CCCCEEEEECCTTCCEEEEEECTTTCEEEEEESSSSEEEEEETTS
T ss_pred CCCCeEEEEEECCCCcEEEEEHHHhhCcch---hhceEEeeecCCCCCcceEEEeCCCCeEEEEeccCCeEEEEeCCC
Confidence 4 333332 232333333 222111 01111111 111234456675 6787788888888999999875
No 369
>1suu_A DNA gyrase subunit A; topoisomerase,DNA gyrase, beta-propeller, beta-pinwheel, ISO; HET: DNA; 1.75A {Borrelia burgdorferi} SCOP: b.68.10.1
Probab=59.60 E-value=67 Score=25.82 Aligned_cols=196 Identities=10% Similarity=0.053 Sum_probs=104.7
Q ss_pred CCEEEEEeCCCeEEEEeecCCCccccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcCCCCEEEE
Q 047325 92 GEKIFTGHQDGKIRVWKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCGLLYT 171 (368)
Q Consensus 92 ~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~ 171 (368)
..++++.+.+|.|+--.+..-+.......+. ... .+ .-.+.+..+........++.
T Consensus 8 e~~~v~~T~~G~iKr~~~~~~~~~~~~~~g~-------~~~----------------~l-ke~D~l~~~~~~~~~~~ll~ 63 (312)
T 1suu_A 8 ENIVVMLTKKGFLKRLSQNEYKLQGTGGKGL-------SSF----------------DL-NDGDEIVIALCVNTHDYLFM 63 (312)
T ss_dssp CEEEEEEETTCBEEEEEGGGSCBCCSSCCCE-------ECC----------------CC-CTTCCEEEEEEEETTCEEEE
T ss_pred CCEEEEEeCCCEEEEeEHHHhhccccCCCCc-------eec----------------cc-CCCCEEEEEEEECCCCEEEE
Confidence 5678899999999987665432111100000 000 00 02234444444445567777
Q ss_pred EeCCCcEEEEEccC---C------eE---EEEeecCCCceEEEE-eC---CCCeEEEEcCCCeEEEEEcCCCCCCc-ccc
Q 047325 172 ASWDRTFKVWRISD---S------KC---LESVSAHDDAVNSVV-SS---SEGLIFTGSADGTVKVWKREQHGKGT-KHS 234 (368)
Q Consensus 172 ~~~d~~i~iwd~~~---~------~~---~~~~~~~~~~v~~~~-~~---~~~~l~~~~~dg~i~i~d~~~~~~~~-~~~ 234 (368)
.+..|.++-..... . .+ ...+.. ...|.++. .. ++..++..+.+|.++...+....... ...
T Consensus 64 ~T~~G~~~~~~~~~ip~~~r~~~G~~i~~~l~l~~-~e~i~~~~~~~~~~~~~~ll~~T~~G~~kr~~l~~~~~~r~~G~ 142 (312)
T 1suu_A 64 ISNEGKLYLINAYEIKDSSRASKGQNISELINLGD-QEEILTIKNSKDLTDDAYLLLTTASGKIARFESTDFKAVKSRGV 142 (312)
T ss_dssp EETTSEEEEEEGGGSCC-------CBGGGTSCCCT-TCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGCC----CE
T ss_pred EECCCeEEEEEHHHCCCCCccCCCcChhhccCCCC-CCEEEEEEEeccCCCCCEEEEEeCCCeEEEEEHHHhhccCCCcE
Confidence 78888877665532 1 11 111222 23444443 32 33478888999999998885432211 111
Q ss_pred cceeeccccccEEEEEEcCCCCEEEEecCCCcEEEEeCCCccccc--------eeeeccceEEEEEEe--CCCEEEEeeC
Q 047325 235 LAQTLLKQECAVTALVVSSSRSIVYCGSSDGLVNFWEREKQLSHG--------GVLKGHKLAVLCLAA--AGKLVFSGSA 304 (368)
Q Consensus 235 ~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~--------~~~~~~~~~~~~~~~--~~~~l~~~~~ 304 (368)
....+.. ...+..+....+...++..+.+|.+..+....-.... ..+. ....+..+.. ++..+++.+.
T Consensus 143 ~~i~L~~-~d~lv~~~~~~~~~~i~l~T~~G~~~r~~~~ev~~~gR~~~Gv~~i~L~-~~d~vv~~~~v~~~~~l~~vt~ 220 (312)
T 1suu_A 143 IVIKLND-KDFVTSAEIVFKDEKVICLSKKGSAFIFNSRDVRLTNRGTQGVCGMKLK-EGDLFVKVLSVKENPYLLIVSE 220 (312)
T ss_dssp ECBCCCT-TCCEEEEEEECTTCEEEEEETTSEEEEEEGGGSCBCCTTBCCEECCCCC-TTCCEEEEEECTTCSEEEEEET
T ss_pred EEEecCC-CCEEEEEEEeCCCCEEEEEeCCCcEEEEEHHHccccCCCCCCeEeEEeC-CCCEEEEEEEECCCCeEEEEEC
Confidence 1122333 3455555555555678888899999888865311110 0111 1233444433 4667888899
Q ss_pred CCeEEEEecC
Q 047325 305 DKTICVWRRD 314 (368)
Q Consensus 305 dg~i~iw~~~ 314 (368)
.|..+..+++
T Consensus 221 ~G~~kr~~~~ 230 (312)
T 1suu_A 221 NGYGKRLNMS 230 (312)
T ss_dssp TSEEEEEEGG
T ss_pred CCceEEEEHH
Confidence 9999988874
No 370
>3f7f_A Nucleoporin NUP120; nuclear pore complex, macromolecular assembly, membrane coat, nucleocytoplasmic transport, beta-propeller; 2.60A {Saccharomyces cerevisiae} PDB: 3h7n_A 3hxr_A
Probab=54.33 E-value=30 Score=31.62 Aligned_cols=30 Identities=7% Similarity=0.187 Sum_probs=26.3
Q ss_pred eEEEEEEeCCCEEEEeeCCCeEEEEecCCC
Q 047325 287 LAVLCLAAAGKLVFSGSADKTICVWRRDGA 316 (368)
Q Consensus 287 ~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~ 316 (368)
..|.++.++..++++-+.|.++|+|++.+.
T Consensus 222 ~~Is~~~~~~~fLftL~~Dh~LRiWsL~t~ 251 (729)
T 3f7f_A 222 SVISCKLFHERYLIVLTQNCHLKIWDLTSF 251 (729)
T ss_dssp CEEEEEEETTTEEEEEETTCEEEEEETTTT
T ss_pred ceEEEeccCCcEEEEEEcCCeEEEEEcCCC
Confidence 456677888999999999999999999887
No 371
>1a12_A RCC1, regulator of chromosome condensation 1; guanine nucleotide exchange factor, GEF, RAN, RAS-like nuclear GTP binding protein; 1.70A {Homo sapiens} SCOP: b.69.5.1 PDB: 1i2m_B
Probab=51.30 E-value=1.1e+02 Score=25.69 Aligned_cols=241 Identities=12% Similarity=0.048 Sum_probs=0.0
Q ss_pred CcEEEEEecCCEEEEccCCCcEEEE--------------cCCcceecccCCCCCeeEEEEeCCEEEEEeCCCeEEEEee-
Q 047325 45 GHIYSLAASKDLLYTGSDSKNIRVW--------------KNLKEFCGFKASSGLVKAIVISGEKIFTGHQDGKIRVWKI- 109 (368)
Q Consensus 45 ~~i~~~~~~~~~l~s~~~dg~i~iw--------------~~~~~~~~~~~~~~~v~~~~~~~~~l~s~~~dg~i~vw~~- 109 (368)
..|..++......+.-..||.|..| +........-.-...|..++.-....+.-..||.|..|-.
T Consensus 59 ~~i~~va~G~~hs~~l~~~G~v~~wG~n~~GqLG~~~~~~~~~~~P~~v~l~~~i~~va~G~~hs~alt~~G~v~~wG~~ 138 (413)
T 1a12_A 59 EDVVQAEAGGMHTVCLSKSGQVYSFGCNDEGALGRDTSVEGSEMVPGKVELQEKVVQVSAGDSHTAALTDDGRVFLWGSF 138 (413)
T ss_dssp SCEEEEEECSSEEEEEETTSCEEEEECCTTSTTCSCCCSTTGGGSCEECCCCSCEEEEEECSSEEEEEETTSCEEEEECE
T ss_pred CCeEEEEeCCCeEEEEcCCCCEEEEECCCCCCCCCCCCCCccccCCeEecCCCcEEEEecCCCeEEEEcCCCcEEEeeCC
Q ss_pred -cCCCccccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcCCCCEEEEEeCCCcEEEEEccCCeE
Q 047325 110 -SPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCGLLYTASWDRTFKVWRISDSKC 188 (368)
Q Consensus 110 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~ 188 (368)
+...+.-............... ....|..++.-.+ +.++-..||.|..|-....-.
T Consensus 139 ~n~~GqlG~~~~~~~~~~P~~v~---------------------~~~~i~~ia~G~~--hs~alt~~G~v~~wG~n~~Gq 195 (413)
T 1a12_A 139 RDNNGVIGLLEPMKKSMVPVQVQ---------------------LDVPVVKVASGND--HLVMLTADGDLYTLGCGEQGQ 195 (413)
T ss_dssp EETTEEEESSBBTBCEEEEEEEC---------------------CSSCEEEEEECSS--EEEEEETTSCEEEEECCTTST
T ss_pred cCCCCccCcCCccccccCCEEec---------------------CCCCEEEEEecCc--eEEEEcCCCCEEEeeCCCCCc
Q ss_pred EEEeec----------------------------CCCceEEEEeCCCCeEEEEcCCCeEEEEEcCCCCCC--------cc
Q 047325 189 LESVSA----------------------------HDDAVNSVVSSSEGLIFTGSADGTVKVWKREQHGKG--------TK 232 (368)
Q Consensus 189 ~~~~~~----------------------------~~~~v~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~--------~~ 232 (368)
+..-.. ....|..++.... ..++-..+|.|+.|=.....+. ..
T Consensus 196 LG~~~~~~~~~~~~~~~~~~~~P~~v~~~~~g~~~~~~i~~ia~G~~-hs~alt~~G~v~~wG~n~~gqLG~~~~~~~~~ 274 (413)
T 1a12_A 196 LGRVPELFANRGGRQGLERLLVPKCVMLKSRGSRGHVRFQDAFCGAY-FTFAISHEGHVYGFGLSNYHQLGTPGTESCFI 274 (413)
T ss_dssp TCSCGGGTSSSCGGGGHHHHHSCEECCCBCSSCCSBCCEEEEEEETT-EEEEEETTCCEEEEECCTTSTTSCSSCSCEEE
T ss_pred cCCCccccccccccccccccccCceEeeccccccCCccEEEEEeCCC-EEEEEeCCCCEEEEeCCCCcCCCCCCCCcccc
Q ss_pred cccceeeccccccEEEEEEcCCCCEEEEecCCCcEEEEeC----------CCccccceeeeccceEEEEEEeCCCEEEEe
Q 047325 233 HSLAQTLLKQECAVTALVVSSSRSIVYCGSSDGLVNFWER----------EKQLSHGGVLKGHKLAVLCLAAAGKLVFSG 302 (368)
Q Consensus 233 ~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~----------~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 302 (368)
...+..+......|..++. ...+.+.-..||.|+.|-. ................+..++......++-
T Consensus 275 P~~v~~l~~~~~~v~~ia~--G~~hs~al~~~G~v~~wG~n~~GqLG~g~~~~~~~~P~~v~~l~~v~~v~~G~~hs~al 352 (413)
T 1a12_A 275 PQNLTSFKNSTKSWVGFSG--GQHHTVCMDSEGKAYSLGRAEYGRLGLGEGAEEKSIPTLISRLPAVSSVACGASVGYAV 352 (413)
T ss_dssp EEECGGGCCTTCCEEEEEE--CSSEEEEEETTSCEEEEECCGGGTTCSCTTCCCEEEEEECCSSSSEEEEEECSSEEEEE
T ss_pred cEEchhccCCCceEEEEec--ccceEEEEeCCCCEEEeeCCCCCccCCCCCCccccCCEEecccCceeEEEECcceEEEE
Q ss_pred eCCCeEEEE
Q 047325 303 SADKTICVW 311 (368)
Q Consensus 303 ~~dg~i~iw 311 (368)
..||.|+.|
T Consensus 353 t~~G~v~~w 361 (413)
T 1a12_A 353 TKDGRVFAW 361 (413)
T ss_dssp ETTSCEEEE
T ss_pred eCCCCEEEe
No 372
>1wp5_A Topoisomerase IV; broken beta-propeller, hairpin-invaded beta-propeller, six- bladed beta-propeller; 1.79A {Geobacillus stearothermophilus} SCOP: b.68.10.1
Probab=50.46 E-value=99 Score=25.01 Aligned_cols=237 Identities=10% Similarity=0.051 Sum_probs=119.2
Q ss_pred CEEEEccCCCcEEEEcCC------cceecccCCCCCeeEEEEe-CCEEEEEeCCCeEEEEeecCCCccccccCCccccce
Q 047325 55 DLLYTGSDSKNIRVWKNL------KEFCGFKASSGLVKAIVIS-GEKIFTGHQDGKIRVWKISPKNQSVHKRAGTLPTLK 127 (368)
Q Consensus 55 ~~l~s~~~dg~i~iw~~~------~~~~~~~~~~~~v~~~~~~-~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~ 127 (368)
+.+++.+.+|.|+--.+. .....++.....+..+..+ .+.|+..+..|.+.-.....-........+. +...
T Consensus 6 ~~~v~lT~~G~IKr~~~~~~~~~~~~~~~lke~D~l~~~~~~~t~d~ll~fT~~Gr~~~~~~~elp~~~r~a~G~-~i~~ 84 (323)
T 1wp5_A 6 DVIVTVTKDGYVKRTSLRSYAASNGQDFAMKDTDRLLAMLEMNTKDVLLLFTNKGNYLYCPVHELPDIRWKDLGQ-HIAN 84 (323)
T ss_dssp EEEEEEETTCEEEEEEHHHHHHTTTCCCCCCTTCCEEEEEEEETTSEEEEEETTSEEEEEEGGGSCBCCTTSCCE-EGGG
T ss_pred cEEEEEeCCCEEEEeEHHHhhhcCccccccCCCCEEEEEEEECCCCEEEEEECCCEEEEEEHHHCcCCCCCCCCc-Chhh
Confidence 467888889988875432 1112233333333333333 6788888888987666554321111111110 0000
Q ss_pred eeeeccCCCCceeEecccceeeeeecCCCEeEEEEcC---CCCEEEEEeCCCcEEEEEccC--------CeEEEEeecCC
Q 047325 128 DIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQ---DCGLLYTASWDRTFKVWRISD--------SKCLESVSAHD 196 (368)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~---~~~~l~~~~~d~~i~iwd~~~--------~~~~~~~~~~~ 196 (368)
. + .+ .....|..+...+ ++.+++.++.+|.++-..+.. +.....+...
T Consensus 85 -~----------i--------~L-~~~e~Iv~~~~~~~~~~~~~ll~~T~~G~iKrt~l~e~~~~~r~~G~~ai~l~e~- 143 (323)
T 1wp5_A 85 -I----------I--------PI-DRDEEIIKAIPINDFELNGYFLFVTRNGMVKKTELKHYKAQRYSKPLTGINLKND- 143 (323)
T ss_dssp -T----------S--------CC-CTTCCEEEEEEESCTTSSCEEEEEETTSEEEEEEGGGGCCSCCSSCEECSCCCTT-
T ss_pred -c----------c--------CC-CCCCEEEEEEEecccCCCceEEEEeCCCeEEEeEHHHhhhccccCceEEEEeCCC-
Confidence 0 0 00 0233455443323 256788999999999988742 2222233333
Q ss_pred CceEEE-EeCCCCeEEEEcCCCeEEEEEcCCCC---CCcccccceeeccccccEEEEEEcCCCC-EEEEecCCCcEEEEe
Q 047325 197 DAVNSV-VSSSEGLIFTGSADGTVKVWKREQHG---KGTKHSLAQTLLKQECAVTALVVSSSRS-IVYCGSSDGLVNFWE 271 (368)
Q Consensus 197 ~~v~~~-~~~~~~~l~~~~~dg~i~i~d~~~~~---~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~~dg~i~i~d 271 (368)
..+..+ ...++..++..+.+|.+..++...-. +.........+. ....|.++...+++. .+++.+..|..+..+
T Consensus 144 d~lv~~~~~~~~~~i~l~T~~G~~irf~~~ev~~~gR~a~GV~~i~L~-~~d~Vv~~~~~~~~~~~ll~vt~~G~gKr~~ 222 (323)
T 1wp5_A 144 DQVVDVHLTDGMNELFLVTHNGYALWFDESEVSIVGVRAAGVKGMNLK-EGDYIVSGQLITSKDESIVVATQRGAVKKMK 222 (323)
T ss_dssp CCEEEEEEECSCSEEEEEETTSEEEEEEGGGSCBCCSSCCCEECCCCC-TTCCEEEEEEECCTTCEEEEEETTSEEEEEE
T ss_pred CEEEEEEEeCCCCEEEEEeCCCcEEEEEHHHCcccCCCCcCEEEEEeC-CCCEEEEEEEEcCCCcEEEEEECCCceEEEE
Confidence 344444 33444478888899999888775321 111111111222 234455554444444 788888889888877
Q ss_pred CCCcc---------ccceeeeccceEEE-EEEe-CCCEEEEeeCCCeEEEEecC
Q 047325 272 REKQL---------SHGGVLKGHKLAVL-CLAA-AGKLVFSGSADKTICVWRRD 314 (368)
Q Consensus 272 ~~~~~---------~~~~~~~~~~~~~~-~~~~-~~~~l~~~~~dg~i~iw~~~ 314 (368)
+..-. ............+. ++.. ++..++..+.+|.+....+.
T Consensus 223 ~~e~~~~~Rg~kGv~~~~~~~~~~~~l~~~~~v~~~~~i~~it~~g~~ir~~~~ 276 (323)
T 1wp5_A 223 LTEFEKATRAKRGVVILRELKANPHRISGFVVAQDSDTIYLQTEKSFIETIKVG 276 (323)
T ss_dssp GGGSCCCCTTSCCEECSCCCSSSCCCEEEEEEECTTCEEEEEETTSCEEEEEGG
T ss_pred HHHccccCCCCCCEECeeecCCCCceEEEEEEeCCCCeEEEEeCCCeEEEEEhh
Confidence 65311 11111111121233 2222 35556667777777666654
No 373
>3of7_A Regulator of chromosome condensation; beta-propeller, guanine nucleotide exchange factor (GEF), GS histones, nucleus, cell cycle; 1.90A {Saccharomyces cerevisiae}
Probab=49.44 E-value=1.3e+02 Score=25.92 Aligned_cols=247 Identities=11% Similarity=0.075 Sum_probs=125.1
Q ss_pred CCcEEEEEecCCEEEEccCCCcEEEEcCCc--ce----------------------------------ecccC-------
Q 047325 44 EGHIYSLAASKDLLYTGSDSKNIRVWKNLK--EF----------------------------------CGFKA------- 80 (368)
Q Consensus 44 ~~~i~~~~~~~~~l~s~~~dg~i~iw~~~~--~~----------------------------------~~~~~------- 80 (368)
...|..++......+.-..||.|..|=... ++ .....
T Consensus 66 ~~~i~~va~G~~Ht~alt~~G~v~~wG~n~~GqLG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~v~~~~l~~~~ 145 (473)
T 3of7_A 66 EAKIISFAVGGMHTLALDEESNVWSWGCNDVGALGRDTSNAKEQLKDMDADDSSDDEDGDLNELESTPAKIPRESFPPLA 145 (473)
T ss_dssp TTCEEEEEECSSEEEEEETTCCEEEEECCTTSTTCSCCC---------------------CCHHHHSCEECCGGGCHHHH
T ss_pred CCCEEEEEeCCCeEEEEecCCeEEEeECCCCCCCCCCCcccccccccccccccCccccccccccccCceecccccCCccc
Confidence 457888988877666666899999993210 00 00000
Q ss_pred CCCCeeEEEEeCCEEEEEeCCCeEEEEeec---CCCccccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCE
Q 047325 81 SSGLVKAIVISGEKIFTGHQDGKIRVWKIS---PKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAV 157 (368)
Q Consensus 81 ~~~~v~~~~~~~~~l~s~~~dg~i~vw~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 157 (368)
....|..++......+.-..||.|..|-.. .++.-. .... ... ...+ ..+-.-....|
T Consensus 146 ~~~~i~~va~G~~hs~alt~~G~vy~wG~n~~~~GqLG~-~~~~-~~~--~~~P---------------~~v~~l~~~~i 206 (473)
T 3of7_A 146 EGHKVVQLAATDNMSCALFSNGEVYAWGTFRCNEGILGF-YQDK-IKI--QKTP---------------WKVPTFSKYNI 206 (473)
T ss_dssp TTCCEEEEEECSSEEEEEETTSCEEEEECEEETTEEEES-BTTT-BSC--EEEE---------------EECCCCCSSCE
T ss_pred CCCcEEEEEccCCEEEEEeCCCeEEEeeCCcCCCCccCC-CCCC-Ccc--ccCc---------------EEccccCCCCE
Confidence 135677777767777778899999999752 111100 0000 000 0000 00000012346
Q ss_pred eEEEEcCCCCEEEEEeCCCcEEEEEccCCeEEE-------------EeecCCCceEEEEeCCCCeEEEEcCCCeEEEEEc
Q 047325 158 SCMSLDQDCGLLYTASWDRTFKVWRISDSKCLE-------------SVSAHDDAVNSVVSSSEGLIFTGSADGTVKVWKR 224 (368)
Q Consensus 158 ~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~-------------~~~~~~~~v~~~~~~~~~~l~~~~~dg~i~i~d~ 224 (368)
..++.. ....++-..+|.|..|-....-.+. ........|..++.... ..++-..+|.|+.|-.
T Consensus 207 ~~va~G--~~hs~alt~~G~v~~wG~n~~GqLG~~~~~~~~~~~~~p~~~~~~~v~~Ia~G~~-hs~alt~~G~v~~wG~ 283 (473)
T 3of7_A 207 VQLAPG--KDHILFLDEEGMVFAWGNGQQNQLGRKVMERFRLKTLDPRPFGLRHVKYIASGEN-HCFALTKDNKLVSWGL 283 (473)
T ss_dssp EEEEEC--SSEEEEEETTSCEEEEECCTTSTTSSCCCGGGTTTTCSCEECSCCSEEEEEECSS-EEEEEETTSCEEEEEE
T ss_pred EEEEec--CCeEEEEeCCCeEEEEeCCCCCCCCCCccccccccccCceecCCcceEEEecCCC-eEEEEecCCCEEEeCC
Confidence 666654 3355666788999999653211000 00001135666665433 4444457899999976
Q ss_pred CCCCCCcc----------cccceeeccccccEEEEEEcCCCCEEEEecCCCcEEEEeCCCccccc---------------
Q 047325 225 EQHGKGTK----------HSLAQTLLKQECAVTALVVSSSRSIVYCGSSDGLVNFWEREKQLSHG--------------- 279 (368)
Q Consensus 225 ~~~~~~~~----------~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~--------------- 279 (368)
...++... ..+..........|..++... ..-+.-..+|.|+.|-....-.+.
T Consensus 284 n~~GqlG~~~~~~~~~~~~~P~~v~~~~~~~i~~ia~G~--~hs~~lt~~G~v~~wG~n~~GqLG~~~~~~~~~~~~~~~ 361 (473)
T 3of7_A 284 NQFGQCGVSEDVEDGALVTKPKRLALPDNVVIRSIAAGE--HHSLILSQDGDLYSCGRLDMFEVGIPKDNLPEYTYKDVH 361 (473)
T ss_dssp CTTSTTCCCSCCCTTCEEEEEEECCCCTTCCEEEEEECS--SEEEEEETTSCEEEEEECTTCTTCCCGGGCCTTCEECTT
T ss_pred CCCCCcCCCCcccCCceeeccccccccCCccEEEEEeCC--CeEEEEeCCCeEEEEECCCCCccCCCccccccccccccC
Confidence 54332100 001111111223566666543 334444678899999743211110
Q ss_pred -------e-eeeccceEEEEEEeCCCEEEEeeCCCeEEEEecC
Q 047325 280 -------G-VLKGHKLAVLCLAAAGKLVFSGSADKTICVWRRD 314 (368)
Q Consensus 280 -------~-~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~ 314 (368)
. ........+..++......++-..||.|+.|=..
T Consensus 362 ~~~~~~~~P~~v~~~~~v~~Ia~G~~hs~al~~~G~vy~wG~n 404 (473)
T 3of7_A 362 GKARAVPLPTKLNNVPKFKSVAAGSHHSVAVAQNGIAYSWGFG 404 (473)
T ss_dssp SCEEEEEEEEECCSSCCEEEEEECSSEEEEEETTSCEEEEECC
T ss_pred CceeeeccCcccCCCCceEEEEeCCCeEEEEeCCCcEEEeeCC
Confidence 0 0000011456666666666666789999999643
No 374
>4a9v_A PHOX; hydrolase, beta-propeller; 1.10A {Pseudomonas fluorescens} PDB: 3zwu_A 4a9x_A*
Probab=46.33 E-value=1.5e+02 Score=26.45 Aligned_cols=59 Identities=10% Similarity=0.109 Sum_probs=40.6
Q ss_pred CCEeEEEEcCCCCEEEEEeC------------CCcEEEEEccCCeEEEEeecC-CCceEEEEeCCCC-eEEEE
Q 047325 155 DAVSCMSLDQDCGLLYTASW------------DRTFKVWRISDSKCLESVSAH-DDAVNSVVSSSEG-LIFTG 213 (368)
Q Consensus 155 ~~v~~~~~~~~~~~l~~~~~------------d~~i~iwd~~~~~~~~~~~~~-~~~v~~~~~~~~~-~l~~~ 213 (368)
.....|.|.++|.+.++... ...+..++..+++....+... ...++.++|+||+ .|+++
T Consensus 476 nsPDnL~fd~~G~LWf~TD~~~~~~g~~~~~gnn~v~~~dp~tGel~~fl~~P~~aEpnGiafSPD~ktLfV~ 548 (592)
T 4a9v_A 476 NSPDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSPDQKTLFVG 548 (592)
T ss_dssp CCEEEEEECTTCCEEEEECCCCCCSGGGTTCCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECTTSSEEEEE
T ss_pred CCCCceEECCCCCEEEEeCCCcCccccccccCCceEEEEeCCCCeEEEEEeCCCCccccCCEECCCCCEEEEE
Confidence 44678999999987774322 125777787778876666543 3568999999998 44443
No 375
>1suu_A DNA gyrase subunit A; topoisomerase,DNA gyrase, beta-propeller, beta-pinwheel, ISO; HET: DNA; 1.75A {Borrelia burgdorferi} SCOP: b.68.10.1
Probab=45.10 E-value=1.2e+02 Score=24.37 Aligned_cols=198 Identities=11% Similarity=0.135 Sum_probs=105.4
Q ss_pred cCCEEEEccCCCcEEEEcCCc---------cee--cccCCCCCeeEEEEe-CCEEEEEeCCCeEEEEeecCCCccccccC
Q 047325 53 SKDLLYTGSDSKNIRVWKNLK---------EFC--GFKASSGLVKAIVIS-GEKIFTGHQDGKIRVWKISPKNQSVHKRA 120 (368)
Q Consensus 53 ~~~~l~s~~~dg~i~iw~~~~---------~~~--~~~~~~~~v~~~~~~-~~~l~s~~~dg~i~vw~~~~~~~~~~~~~ 120 (368)
..+++++.+.+|.|+--.+.. ... .++.....+..+..+ .+.++..+..|.++-.....-........
T Consensus 7 ~e~~~v~~T~~G~iKr~~~~~~~~~~~~~~g~~~~~lke~D~l~~~~~~~~~~~ll~~T~~G~~~~~~~~~ip~~~r~~~ 86 (312)
T 1suu_A 7 KENIVVMLTKKGFLKRLSQNEYKLQGTGGKGLSSFDLNDGDEIVIALCVNTHDYLFMISNEGKLYLINAYEIKDSSRASK 86 (312)
T ss_dssp -CEEEEEEETTCBEEEEEGGGSCBCCSSCCCEECCCCCTTCCEEEEEEEETTCEEEEEETTSEEEEEEGGGSCC------
T ss_pred CCCEEEEEeCCCEEEEeEHHHhhccccCCCCceecccCCCCEEEEEEEECCCCEEEEEECCCeEEEEEHHHCCCCCccCC
Confidence 344788889999998765421 111 122223233333333 66888888899887766543211110000
Q ss_pred CccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcC---CCCEEEEEeCCCcEEEEEccC-------CeEEE
Q 047325 121 GTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQ---DCGLLYTASWDRTFKVWRISD-------SKCLE 190 (368)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~---~~~~l~~~~~d~~i~iwd~~~-------~~~~~ 190 (368)
+. +... .+ .+ ...+.|..+...+ +..+++..+..|.++...+.. |....
T Consensus 87 G~-~i~~-----------~l--------~l-~~~e~i~~~~~~~~~~~~~~ll~~T~~G~~kr~~l~~~~~~r~~G~~~i 145 (312)
T 1suu_A 87 GQ-NISE-----------LI--------NL-GDQEEILTIKNSKDLTDDAYLLLTTASGKIARFESTDFKAVKSRGVIVI 145 (312)
T ss_dssp -C-BGGG-----------TS--------CC-CTTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGCC----CEECB
T ss_pred Cc-Chhh-----------cc--------CC-CCCCEEEEEEEeccCCCCCEEEEEeCCCeEEEEEHHHhhccCCCcEEEE
Confidence 00 0000 00 00 0223444443332 456788889999999988743 33333
Q ss_pred EeecCCCceEEEEe-CCCCeEEEEcCCCeEEEEEcCCC---CCCcccccceeeccccccEEEEEEcCCCCEEEEecCCCc
Q 047325 191 SVSAHDDAVNSVVS-SSEGLIFTGSADGTVKVWKREQH---GKGTKHSLAQTLLKQECAVTALVVSSSRSIVYCGSSDGL 266 (368)
Q Consensus 191 ~~~~~~~~v~~~~~-~~~~~l~~~~~dg~i~i~d~~~~---~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~ 266 (368)
.+.. ...+..+.. .++..++..+.+|.+..+....- ++.........+.. ...+..+...+++..+++.+..|.
T Consensus 146 ~L~~-~d~lv~~~~~~~~~~i~l~T~~G~~~r~~~~ev~~~gR~~~Gv~~i~L~~-~d~vv~~~~v~~~~~l~~vt~~G~ 223 (312)
T 1suu_A 146 KLND-KDFVTSAEIVFKDEKVICLSKKGSAFIFNSRDVRLTNRGTQGVCGMKLKE-GDLFVKVLSVKENPYLLIVSENGY 223 (312)
T ss_dssp CCCT-TCCEEEEEEECTTCEEEEEETTSEEEEEEGGGSCBCCTTBCCEECCCCCT-TCCEEEEEECTTCSEEEEEETTSE
T ss_pred ecCC-CCEEEEEEEeCCCCEEEEEeCCCcEEEEEHHHccccCCCCCCeEeEEeCC-CCEEEEEEEECCCCeEEEEECCCc
Confidence 3443 344444443 44447888899999999987542 11111111122222 345666655555667888889999
Q ss_pred EEEEeCC
Q 047325 267 VNFWERE 273 (368)
Q Consensus 267 i~i~d~~ 273 (368)
.+..++.
T Consensus 224 ~kr~~~~ 230 (312)
T 1suu_A 224 GKRLNMS 230 (312)
T ss_dssp EEEEEGG
T ss_pred eEEEEHH
Confidence 9888875
No 376
>3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase, isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis}
Probab=43.85 E-value=1.3e+02 Score=24.41 Aligned_cols=159 Identities=12% Similarity=0.086 Sum_probs=89.1
Q ss_pred CCEeEEEEcC---CCCEEEEEeCCCcEEEEEccCC-------eEEEEeecCCCceEEEEeCCCCeEEEEcCCCeEEEEEc
Q 047325 155 DAVSCMSLDQ---DCGLLYTASWDRTFKVWRISDS-------KCLESVSAHDDAVNSVVSSSEGLIFTGSADGTVKVWKR 224 (368)
Q Consensus 155 ~~v~~~~~~~---~~~~l~~~~~d~~i~iwd~~~~-------~~~~~~~~~~~~v~~~~~~~~~~l~~~~~dg~i~i~d~ 224 (368)
..|..+..-+ +..+++..+.+|.++--.+... .....++....-+.......+..++..+..|.+..+..
T Consensus 95 e~i~~~~~~~~~~~e~~~v~~T~~G~iKr~~l~~~~~~~r~G~~~i~lke~D~lv~~~~~~~~d~ill~T~~G~~~rf~~ 174 (327)
T 3uc1_A 95 ERIAQVIQIRGYTDAPYLVLATRNGLVKKSKLTDFDSNRSGGIVAVNLRDNDELVGAVLCSAGDDLLLVSANGQSIRFSA 174 (327)
T ss_dssp CCEEEEEEESSTTSSSEEEEEETTSEEEEEEGGGGCCCCSSCEESCBCCTTCCEEEEEEECTTCEEEEEETTSEEEEEEC
T ss_pred CEEEEEEEeccCCCCCEEEEEcCCCEEEEeEHHHhhccccCceEEEEECCCCEEEEEEEecCCCEEEEEECCCeEEEEEC
Confidence 4455554333 4679999999999999887542 22233444333344444444457888888999888877
Q ss_pred C--CC---CCCcccccceeeccccccEEEEEEcCCCCEEEEecCCCcEEEEeCCCcccc-------c-eeeeccceEEEE
Q 047325 225 E--QH---GKGTKHSLAQTLLKQECAVTALVVSSSRSIVYCGSSDGLVNFWEREKQLSH-------G-GVLKGHKLAVLC 291 (368)
Q Consensus 225 ~--~~---~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~-------~-~~~~~~~~~~~~ 291 (368)
. .- +..........+. ....|.++...+++..++..+..|.++.-.+..-... . ..+......+..
T Consensus 175 ~~~eip~~gr~a~Gv~~i~L~-~~d~Vv~~~~~~~~~~ll~~T~~G~~Krt~l~e~~~~~R~~~G~~~~~l~~~~d~lv~ 253 (327)
T 3uc1_A 175 TDEALRPMGRATSGVQGMRFN-IDDRLLSLNVVREGTYLLVATSGGYAKRTAIEEYPVQGRGGKGVLTVMYDRRRGRLVG 253 (327)
T ss_dssp CTTTSCCCCTTSBCEESSCCC-TTCCEEEEEECCTTCEEEEEETTSEEEEEEGGGSCBCCTTSCCEESSCCCTTTCSEEE
T ss_pred cccccCcCCcCCCCeeeecCC-CCCEEEEEEEECCCCEEEEEeCCCcEEEEEHHHccccCcCCCcEEEEEecCCCCeEEE
Confidence 6 22 1111111111222 3345666666666678899999999988775422111 0 011110122222
Q ss_pred EE--eCCCEEEEeeCCCeEEEEecC
Q 047325 292 LA--AAGKLVFSGSADKTICVWRRD 314 (368)
Q Consensus 292 ~~--~~~~~l~~~~~dg~i~iw~~~ 314 (368)
.. .+...++..+.+|.+.-++..
T Consensus 254 ~~~~~~~~~i~l~T~~G~~ir~~~~ 278 (327)
T 3uc1_A 254 ALIVDDDSELYAVTSGGGVIRTAAR 278 (327)
T ss_dssp EEEECTTCEEEEEEGGGCEEEEEGG
T ss_pred EEEeCCCccEEEEcCCCeEEEEehh
Confidence 22 244566667778887777653
No 377
>3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens}
Probab=43.47 E-value=1.2e+02 Score=27.05 Aligned_cols=56 Identities=11% Similarity=0.071 Sum_probs=38.1
Q ss_pred EeEEEEcCCCCEEEEEeCC------------CcEEEEEccCCeEEEEeecC-CCceEEEEeCCCC-eEEE
Q 047325 157 VSCMSLDQDCGLLYTASWD------------RTFKVWRISDSKCLESVSAH-DDAVNSVVSSSEG-LIFT 212 (368)
Q Consensus 157 v~~~~~~~~~~~l~~~~~d------------~~i~iwd~~~~~~~~~~~~~-~~~v~~~~~~~~~-~l~~ 212 (368)
.--|.|+|.|.++++-..+ ..+.+.+..+++...-+..+ ...++.++|+||+ .|++
T Consensus 478 PDNL~fd~~G~LwI~eDg~~~~~~~~~~~gnn~~~~~~~~~g~~~rf~~~P~gaE~TG~~fspDg~tlfv 547 (592)
T 3zwu_A 478 PDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSPDQKTLFV 547 (592)
T ss_dssp EEEEEECTTCCEEEEECCCCCCSGGGTTTCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECTTSSEEEE
T ss_pred CcceEECCCCCEEEEecCCCcccccccccccceEEEEeCCCCeEEEEEeCCCCccCcCeeECCCCCEEEE
Confidence 4568999999866654322 24566677777776666654 4678899999987 4443
No 378
>1zi0_A DNA gyrase subunit A; beta pinwheel, topoisomerase, spiralling beta pinwheel, DNA wrapping, isomerase, DNA bindng protein; HET: DNA; 2.60A {Escherichia coli}
Probab=42.41 E-value=1.3e+02 Score=24.06 Aligned_cols=237 Identities=11% Similarity=0.046 Sum_probs=0.0
Q ss_pred CCEEEEEeCCCeEEEEeecCCCccccccCCccccceeeeeccCCCCceeEecccceeeeeecCCCEeEEEEcCCCCEEEE
Q 047325 92 GEKIFTGHQDGKIRVWKISPKNQSVHKRAGTLPTLKDIFKSSIKPSNYIEVRRHRTALWIRHSDAVSCMSLDQDCGLLYT 171 (368)
Q Consensus 92 ~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~ 171 (368)
..++++.+.+|.|+--.+..-+.......+....... -.+.+..+........|+.
T Consensus 3 e~~~v~~T~~G~iKr~~~~~~~~~~~~~~g~~~~~~k------------------------e~D~l~~~~~~~~~~~ll~ 58 (307)
T 1zi0_A 3 EDVVVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIK------------------------EEDFIDRLLVANTHDHILC 58 (307)
T ss_dssp CEEEEEEETTSEEEEEECC--------------------------------------------CCEEEEEEEETTCEEEE
T ss_pred CcEEEEEeCCCEEEEeeHHHhhhhccCCCCceeeeeC------------------------CCCEEEEEEEECCCCEEEE
Q ss_pred EeCCCcEEEEEccC---------CeEEE---EeecCCCceEEEE---eCCCCeEEEEcCCCeEEEEEcCCCCCCcccccc
Q 047325 172 ASWDRTFKVWRISD---------SKCLE---SVSAHDDAVNSVV---SSSEGLIFTGSADGTVKVWKREQHGKGTKHSLA 236 (368)
Q Consensus 172 ~~~d~~i~iwd~~~---------~~~~~---~~~~~~~~v~~~~---~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~ 236 (368)
.+..|.+.-+.... |.++. .+...+.-+..+. +.++..++..+.+|.++--.+............
T Consensus 59 fT~~G~~~~~~~~elp~~~~~a~G~~i~~~l~l~~~e~i~~~~~~~~~~~~~~ll~~T~~G~~Krt~l~e~~~~~r~G~~ 138 (307)
T 1zi0_A 59 FSSRGRVYSMKVYQLPEATRGARGRPIVNLLPLEQDERITAILPVTEFEEGVKVFMATANGTVKKTVLTEFNRLRTAGKV 138 (307)
T ss_dssp EETTSEEEEEEGGGSCCCCSSSCCEEGGGTSCCCTTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGTTCCTTCEE
T ss_pred EECCCEEEEEEhhHCcCCCCCCCCeEhhhccCCCCCCEEEEEEEeccCCCCcEEEEEeCCCeEEEEEHHHhhccccCCeE
Q ss_pred eeeccccccEEEEEEcCCCCEEEEecCCCcEEEEeCC---------CccccceeeeccceEEEEEEeCCCEEEEeeCCCe
Q 047325 237 QTLLKQECAVTALVVSSSRSIVYCGSSDGLVNFWERE---------KQLSHGGVLKGHKLAVLCLAAAGKLVFSGSADKT 307 (368)
Q Consensus 237 ~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~---------~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~ 307 (368)
.......+.+..+....+...++..+.+|.+..++.. .+........+....-.....++..+++.+..|.
T Consensus 139 ~i~l~~~d~lv~~~~~~~~~~i~l~T~~G~~irf~~~~v~~~gr~a~Gv~~i~L~~~d~Vv~~~~~~~~~~ll~~T~~G~ 218 (307)
T 1zi0_A 139 AIKLVDGDELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAMGCNTTGVRGIRLGEGDKVVSLIVPRGDGAILTATQNGY 218 (307)
T ss_dssp SSCCCTTCCEEEEEEECTTCEEEEEETTSEEEEEEGGGSCBCCTTCCCEECCCCCTTCCEEEEECCCSSCEEEEEETTSE
T ss_pred EEEECCCCEEEEEEEeCCCCEEEEECCCCcEEEEEHHHcCccCCCCCCeEeEEeCCCCEEEEEEEecCCCEEEEEEcCCc
Q ss_pred EEEEec-------CCCceeeeEeeeccccCeeEEEEecCCeeeecCCcceEEEEEeeCCccccc
Q 047325 308 ICVWRR-------DGAIHTCLSVLTGHTGPVKCLAVEEDRDSSSSTSSCAQRWIVYSGSLDKSD 364 (368)
Q Consensus 308 i~iw~~-------~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~w~l~sg~~D~~v 364 (368)
++-.++ +...+.....+..-.+.+-.+....+.. .+..-+.+|.+
T Consensus 219 ~Kr~~~~e~~~~~Rg~kG~~~~~~~~~~~~lv~~~~v~~~~------------~l~~~t~~g~~ 270 (307)
T 1zi0_A 219 GKRTAVAEYPTKSRATKGVISIKVTERNGLVVGAVQVDDCD------------QIMMITDAGTL 270 (307)
T ss_dssp EEEECGGGSCCCCTTSCCEESSCCCTTTCSEEEEEEECTTC------------EEEEEESSCCE
T ss_pred eEEEEHHHhccCCCCCCCEEeeEecCCCCeEEEEEEeCCCc------------eEEEEcCCCcE
No 379
>4a9v_A PHOX; hydrolase, beta-propeller; 1.10A {Pseudomonas fluorescens} PDB: 3zwu_A 4a9x_A*
Probab=35.86 E-value=1.9e+02 Score=25.73 Aligned_cols=59 Identities=10% Similarity=0.225 Sum_probs=34.3
Q ss_pred ceEEEEeCCCCeEEEEcC-------------CCeEEEEEcCCCCCCcccccceeec-cccccEEEEEEcCCCCEEEEec
Q 047325 198 AVNSVVSSSEGLIFTGSA-------------DGTVKVWKREQHGKGTKHSLAQTLL-KQECAVTALVVSSSRSIVYCGS 262 (368)
Q Consensus 198 ~v~~~~~~~~~~l~~~~~-------------dg~i~i~d~~~~~~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~l~~~~ 262 (368)
....|.+.++|.|..+.. ...+..++...+. ....+. .....++.++|+||++.|+++-
T Consensus 477 sPDnL~fd~~G~LWf~TD~~~~~~g~~~~~gnn~v~~~dp~tGe------l~~fl~~P~~aEpnGiafSPD~ktLfV~v 549 (592)
T 4a9v_A 477 SPDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGE------IRRFMVGPIGCEVTGISFSPDQKTLFVGI 549 (592)
T ss_dssp CEEEEEECTTCCEEEEECCCCCCSGGGTTCCSCEEEEECTTTCC------EEEEEECCTTCEEEEEEECTTSSEEEEEE
T ss_pred CCCceEECCCCCEEEEeCCCcCccccccccCCceEEEEeCCCCe------EEEEEeCCCCccccCCEECCCCCEEEEEE
Confidence 356788888884444221 1145555554331 112222 2235689999999999887764
No 380
>3al9_A Plexin-A2; beta-propeller, membrane protein, signaling protein; HET: NAG; 2.10A {Mus musculus} PDB: 3al8_B*
Probab=35.86 E-value=57 Score=28.76 Aligned_cols=71 Identities=17% Similarity=0.265 Sum_probs=40.3
Q ss_pred eEEEEeCCCC---eEEEEcCCCeEEEEEcCCCCCCcccccceeeccccccEE-EEEEcCCCCEEEEecCCCcEEE
Q 047325 199 VNSVVSSSEG---LIFTGSADGTVKVWKREQHGKGTKHSLAQTLLKQECAVT-ALVVSSSRSIVYCGSSDGLVNF 269 (368)
Q Consensus 199 v~~~~~~~~~---~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~i~-~~~~~~~~~~l~~~~~dg~i~i 269 (368)
.++++....+ .++.|+.+|.|.-..+..............+.....+|. .+.++++..+|+.++.++.+++
T Consensus 402 lT~vav~~~~~~tV~flGT~~G~l~KV~l~~~~~~~~~~e~~~v~~~~~pv~~~l~~~~~~~~Lyv~s~~~V~kv 476 (539)
T 3al9_A 402 LTSVASYVYNGYSVVFVGTKSGKLKKIRADGPPHGGVQYEMVSVFKDGSPILRDMAFSINQLYLYVMSERQVTRV 476 (539)
T ss_dssp EEEEEEEEETTEEEEEEEETTSEEEEEEEEETTTEEEEEEEEECCTTCCCCCSCCEECTTSSEEEEECSSEEEEE
T ss_pred eEEEEeeccCCeEEEEEEcCCCeEEEEEeCCCCccceeEEEEEeecCCCccccceEEccCCCeEEEEecccccee
Confidence 4445443322 788889999886655532211000000111222245674 8889999999999987765554
No 381
>3nvq_A Semaphorin-7A; beta-propeller, signaling, signaling protein-protein binding; HET: NAG NDG; 2.40A {Homo sapiens}
Probab=35.12 E-value=1e+02 Score=27.47 Aligned_cols=46 Identities=9% Similarity=0.200 Sum_probs=28.3
Q ss_pred CEEEEeeCCCeEEEEecCCCc----eeeeEeee--ccccCeeEEEEecCCee
Q 047325 297 KLVFSGSADKTICVWRRDGAI----HTCLSVLT--GHTGPVKCLAVEEDRDS 342 (368)
Q Consensus 297 ~~l~~~~~dg~i~iw~~~~~~----~~~~~~~~--~h~~~v~~l~~~~~~~~ 342 (368)
..+..|+.+|.|.-.-+.... ...+.++. ....+|..|.++++...
T Consensus 381 tVlFLGT~~G~l~Kvv~~~~~~~~~~~~ieei~~~~~~~pi~~L~ls~~~~~ 432 (590)
T 3nvq_A 381 HVLYLTTDRGTIHKVVEPGEQEHSFAFNIMEIQPFRRAAAIQTMSLDAERRK 432 (590)
T ss_dssp EEEEEEETTSCEEEEECCCSSTTCCCEEEEEECCCSSCCCCCEEEEETTTTE
T ss_pred EEEEEEcCCcEEEEEEecCCCCcceeEEEEEeeccCCCCceeeEEEcCCCCE
Confidence 467889999997654332211 11222232 24578999999998763
No 382
>1q47_A Semaphorin 3A; beta propeller, signaling protein; HET: NAG; 2.80A {Mus musculus} SCOP: b.69.12.1
Probab=34.69 E-value=1.2e+02 Score=26.32 Aligned_cols=61 Identities=20% Similarity=0.361 Sum_probs=36.8
Q ss_pred eEEEEcCCCeEEEEEcCCCCCC--cccccceeec--cccccEEEEEEcCCCCEEEEecCCCcEEE
Q 047325 209 LIFTGSADGTVKVWKREQHGKG--TKHSLAQTLL--KQECAVTALVVSSSRSIVYCGSSDGLVNF 269 (368)
Q Consensus 209 ~l~~~~~dg~i~i~d~~~~~~~--~~~~~~~~~~--~~~~~i~~~~~~~~~~~l~~~~~dg~i~i 269 (368)
.++.|+.+|.|.=.-+...... ........+. ....+|..+.++++..+|..++.++.++|
T Consensus 423 V~flGT~~G~l~Kvv~~~~~~~~~~~~~~~eei~v~~~~~pI~~m~l~~~~~~Lyv~s~~~V~~v 487 (495)
T 1q47_A 423 VMFIGTDVGTVLKVVSVPKETWHDLEEVLLEEMTVFREPTTISAMELSTKQQQLYIGSTAGVAQL 487 (495)
T ss_dssp EEEEEETTSCEEEEECC-----------CCEEECCSSSCCCCCEEEEETTTTEEEEEBSSCEEEE
T ss_pred EEEEeCCCcEEEEEEEcCCCCccccceEEEEEEeecCCCCccceEEEcCCCCEEEEEECCeEEEE
Confidence 7888999998754433221110 0011121222 23578899999999999999998886655
No 383
>4hvt_A Ritya.17583.B, post-proline cleaving enzyme; ssgcid, structural genomics, S structural genomics center for infectious disease; 1.70A {Rickettsia typhi}
Probab=32.84 E-value=2.9e+02 Score=25.36 Aligned_cols=183 Identities=9% Similarity=0.034 Sum_probs=86.1
Q ss_pred eEEE-EcCCCCEEEEEeC-C----CcEEEEEccCCeEEE-Eee-cCCC------ceEEEEeCCCCeEEEEc---------
Q 047325 158 SCMS-LDQDCGLLYTASW-D----RTFKVWRISDSKCLE-SVS-AHDD------AVNSVVSSSEGLIFTGS--------- 214 (368)
Q Consensus 158 ~~~~-~~~~~~~l~~~~~-d----~~i~iwd~~~~~~~~-~~~-~~~~------~v~~~~~~~~~~l~~~~--------- 214 (368)
..+. ++|++++++.+-+ . ..++++|+.+++.+. .+. .-+. ....++|.+++.++.+.
T Consensus 132 ~g~~~~~~~~~~~~~~ls~~G~d~~~~~~~d~~t~~~~~~~~~~~~k~~~~~~~~~~~~~W~d~~~~~~~~~~~~~~~~~ 211 (711)
T 4hvt_A 132 RGVSNCFQNPNRYLISMSFGGKDEMFFREWDLEKKDFVKNGFEPITNSGKLLEGKFTYPTWINKDTIIFNLVLHKNEITS 211 (711)
T ss_dssp EEEEECSSSTTEEEEEEEETTCSEEEEEEEETTTTEECTTCSCCBCTTCCBCCEETCCEEEEETTEEEECCCCSTTCBCT
T ss_pred eceeecCCCCCEEEEEeCCCCCceeEEEEEECCcCCcCCCCcccccccccccccccceeeEECCCEEEEEeCCCCCCcCc
Confidence 3444 7888887766532 2 279999999998763 122 0001 11234666444333322
Q ss_pred --CCCeEEEEEcCCCCCCcccccceeeccccccEEEEEEcCCCCE-----EEEec---CCCcEEEEeCCCcccc-ceeee
Q 047325 215 --ADGTVKVWKREQHGKGTKHSLAQTLLKQECAVTALVVSSSRSI-----VYCGS---SDGLVNFWEREKQLSH-GGVLK 283 (368)
Q Consensus 215 --~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~-----l~~~~---~dg~i~i~d~~~~~~~-~~~~~ 283 (368)
....|+.|.+-+... ....+..-... ..-.....++++++ +++.+ ....+++.|....... .....
T Consensus 212 ~~~~~~v~~~~~Gt~~~--~~~~v~~~~~~-~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 288 (711)
T 4hvt_A 212 SLYPNSLYIWKRGESIE--KAKKLFEVPKE-YIYVSAGKLLSDTISSSLIFISANKDFYNYDNYILDTKYKNLKLQKINM 288 (711)
T ss_dssp TSSBCEEEEEETTSCGG--GCEEEEECCTT-SCEEEEEESSCTTTCSSEEEEEEESSSSCEEEEEEECSSSSCEEEECCS
T ss_pred CCCCCEEEEEECCCChH--HCeEEeccCCC-ceEEEEEEecCCCceEEEEEEEEecccCceeEEEEcCCCCCCcceEeec
Confidence 235688887754311 11111111111 11233445666652 44333 2245666665531111 11111
Q ss_pred ccceEEEEEEeCCCEEEEe----------eCCCeEEEEecCCCc-----eeeeEe-e-eccccCeeEEEEecCCeeee
Q 047325 284 GHKLAVLCLAAAGKLVFSG----------SADKTICVWRRDGAI-----HTCLSV-L-TGHTGPVKCLAVEEDRDSSS 344 (368)
Q Consensus 284 ~~~~~~~~~~~~~~~l~~~----------~~dg~i~iw~~~~~~-----~~~~~~-~-~~h~~~v~~l~~~~~~~~~~ 344 (368)
.....+ .-.+++.+++.. ...+.|...+++... ...... + ......+..+.+..+..++.
T Consensus 289 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~ 365 (711)
T 4hvt_A 289 PSDATL-QGSFKEYVFWLLRSDWKFKSHNIKAGSLVALHFTDLLKTESDKTSLKILFTPTANEVFNFISTTKDRVFLA 365 (711)
T ss_dssp CTTCEE-EEEETTEEEEECSSCEEETTEEECTTCEEEEEGGGGGSCGGGCTTCEEEECCCTTEEEEEEEECSSCEEEE
T ss_pred CCcceE-eeeECCEEEEEECcccccccccCCCCeEEEEECCcccccccccccceEEECCCCCCeEEEEEEECCEEEEE
Confidence 112222 223455555532 146778888886531 111222 2 22334678888888755443
No 384
>1zvt_A Topoisomerase IV subunit A; beta-pinwheel, ATPase, supercoiling, decatenation, DNA bindi topology; 1.70A {Escherichia coli}
Probab=32.12 E-value=1.8e+02 Score=22.55 Aligned_cols=116 Identities=10% Similarity=0.031 Sum_probs=62.7
Q ss_pred CEeEEEEcCCCCEEEEEeCCCcEEEEEcc---C----CeEEE---EeecCCCceEEEEeCCCC-eEEEEcCCCeEEEEEc
Q 047325 156 AVSCMSLDQDCGLLYTASWDRTFKVWRIS---D----SKCLE---SVSAHDDAVNSVVSSSEG-LIFTGSADGTVKVWKR 224 (368)
Q Consensus 156 ~v~~~~~~~~~~~l~~~~~d~~i~iwd~~---~----~~~~~---~~~~~~~~v~~~~~~~~~-~l~~~~~dg~i~i~d~ 224 (368)
.+..+........|+..+..|.++-+... . |.++. .+. ....|.++....++ .++.++..|.++...+
T Consensus 34 ~l~~~~~~~t~~~ll~~T~~Gr~~~~~~~elp~~r~~G~~i~~~i~L~-~~e~Iv~~~~~~~~~~lll~T~~G~~Kr~~~ 112 (256)
T 1zvt_A 34 SFKAAVKGKSNQPVVFVDSTGRSYAIDPITLPSARGQGEPLTGKLTLP-PGATVDHMLMESDDQKLLMASDAGYGFVCTF 112 (256)
T ss_dssp CEEEEEEEETTSCEEEEETTSEEEEECGGGSCCSSSCCEEGGGTCCCC-TTCCEEEEECCCTTCEEEEEBTTSEEEEEEG
T ss_pred EEEEEEEeCCCCEEEEEeCCCeEEEEEHHHCCCcCCCCeEeeeeecCC-CCCEEEEEEEeCCCCEEEEEeCCCeEEEeEH
Confidence 34444333334456666777876655442 2 22221 122 23456666443334 7888999999999988
Q ss_pred CCCCC-CcccccceeeccccccEEEEEEc-CCCCEEEEecCCCcEEEEeCC
Q 047325 225 EQHGK-GTKHSLAQTLLKQECAVTALVVS-SSRSIVYCGSSDGLVNFWERE 273 (368)
Q Consensus 225 ~~~~~-~~~~~~~~~~~~~~~~i~~~~~~-~~~~~l~~~~~dg~i~i~d~~ 273 (368)
..... .........+.. ...+..+... .++..++..+.+|.+..++..
T Consensus 113 ~e~~~~~r~G~~~i~L~~-~d~lv~~~~~~~~~~~i~l~T~~G~~lrf~~~ 162 (256)
T 1zvt_A 113 NDLVARNRAGKALITLPE-NAHVMPPVVIEDASDMLLAITQAGRMLMFPVS 162 (256)
T ss_dssp GGGCCCSTTCEECBCCCT-TCCBCCCEECCCTTCEEEEEETTSEEEEEEGG
T ss_pred HHhcccCcCceEEEEECC-CCEEEEEEEecCCCCEEEEEcCCCeEEEEEHH
Confidence 54321 011111222222 2334444444 345678888889998888865
No 385
>3l6v_A GYRA, DNA gyrase subunit A; gyrase A C-terminal domain, GYRA C-terminal domain, DNA wrapping, beta-strand-bearing proline, ATP-binding; HET: DNA; 2.19A {Xanthomonas campestris PV}
Probab=32.06 E-value=2.2e+02 Score=23.60 Aligned_cols=118 Identities=14% Similarity=0.132 Sum_probs=66.9
Q ss_pred CCCEeEEEEcCCCCEEEEEeCCCcEEEEEc---c------CCeEEEE---eecCCCceEEEE-eC---CCCeEEEEcCCC
Q 047325 154 SDAVSCMSLDQDCGLLYTASWDRTFKVWRI---S------DSKCLES---VSAHDDAVNSVV-SS---SEGLIFTGSADG 217 (368)
Q Consensus 154 ~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~---~------~~~~~~~---~~~~~~~v~~~~-~~---~~~~l~~~~~dg 217 (368)
.+.+..+........|+..+..|.+.-+.. + .|.++.. +. ....|.++. .. ++.+|+.++..|
T Consensus 45 ~D~l~~~~~~~t~d~ll~fT~~G~~~~~~~~eip~~~r~a~G~~i~~ll~L~-~~e~Iv~~~~~~~~~~~~~ll~~T~~G 123 (370)
T 3l6v_A 45 EDFIDQLWLVNTHDTLLTFTSSGKVFWLPVHQLPEAGSNARGRPIINWIPLE-SGERVQAVLPVREYADNRYVFMATRNG 123 (370)
T ss_dssp CCCEEEEEEECTTCEEEEEETTSEEEEEEGGGSCBCCTTSCCEEGGGSCCCC-TTCCEEEEEEESCCCTTCEEEEEETTS
T ss_pred CCEEEEEEEecCCCEEEEEeCCCeEEEEEHHHCcCCCcccCCcCHhhccCCC-CCCEEEEEEEeccCCCCcEEEEEeCCC
Confidence 455666655555666777777787766553 2 2333222 22 234555553 32 333899999999
Q ss_pred eEEEEEcCCCCCCc-ccccceeeccccccEEEEEEcCCCCEEEEecCCCcEEEEeCC
Q 047325 218 TVKVWKREQHGKGT-KHSLAQTLLKQECAVTALVVSSSRSIVYCGSSDGLVNFWERE 273 (368)
Q Consensus 218 ~i~i~d~~~~~~~~-~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~ 273 (368)
.++.-.+....... .......+.. ...+..+........++..+.+|.+..++..
T Consensus 124 ~vKrt~l~e~~~~~~~G~~ai~L~~-~d~lv~v~~~~~~~~i~l~T~~G~~irf~~~ 179 (370)
T 3l6v_A 124 TVKKTPLSEFAFRLARGKIAINLDE-GDALVGVALTDGDRDVLLFASNGKTVRFGES 179 (370)
T ss_dssp EEEEEEGGGGCSCCTTCEESSCCCT-TCCEEEEEEECSCCEEEEEETTSEEEEEEGG
T ss_pred eEEEeEHHHhhcccCCceEEEEeCC-CCEEEEEEEeCCCceEEEEeCCCeEEEEEcc
Confidence 99998875432211 1111122222 3445455554555677778888988888754
No 386
>1q47_A Semaphorin 3A; beta propeller, signaling protein; HET: NAG; 2.80A {Mus musculus} SCOP: b.69.12.1
Probab=30.71 E-value=99 Score=26.90 Aligned_cols=45 Identities=11% Similarity=0.144 Sum_probs=27.5
Q ss_pred CEEEEeeCCCeEEEEecCCCc------eeeeEeee--ccccCeeEEEEecCCe
Q 047325 297 KLVFSGSADKTICVWRRDGAI------HTCLSVLT--GHTGPVKCLAVEEDRD 341 (368)
Q Consensus 297 ~~l~~~~~dg~i~iw~~~~~~------~~~~~~~~--~h~~~v~~l~~~~~~~ 341 (368)
..++.|..+|.|.-.-+.... ...+.++. ....+|..|.++++..
T Consensus 422 tV~flGT~~G~l~Kvv~~~~~~~~~~~~~~~eei~v~~~~~pI~~m~l~~~~~ 474 (495)
T 1q47_A 422 DVMFIGTDVGTVLKVVSVPKETWHDLEEVLLEEMTVFREPTTISAMELSTKQQ 474 (495)
T ss_dssp EEEEEEETTSCEEEEECC-----------CCEEECCSSSCCCCCEEEEETTTT
T ss_pred EEEEEeCCCcEEEEEEEcCCCCccccceEEEEEEeecCCCCccceEEEcCCCC
Confidence 367889999987655432211 11222333 2357899999999987
No 387
>1olz_A Semaphorin 4D; developmental protein, CD100, beta-propeller, PSI domain, IG-like domain, extracellular receptor, neurogenesis; 2.0A {Homo sapiens} SCOP: b.1.1.4 b.69.12.1 g.16.2.1 PDB: 3ol2_A*
Probab=29.19 E-value=1.6e+02 Score=26.81 Aligned_cols=42 Identities=12% Similarity=0.166 Sum_probs=26.6
Q ss_pred EEEEeeCCCeEEEE-ecCCCceeeeEeee--ccccCeeEEEEecCC
Q 047325 298 LVFSGSADKTICVW-RRDGAIHTCLSVLT--GHTGPVKCLAVEEDR 340 (368)
Q Consensus 298 ~l~~~~~dg~i~iw-~~~~~~~~~~~~~~--~h~~~v~~l~~~~~~ 340 (368)
.++.|..+|.|.-. ..... ...+.++. ....+|..|.++++.
T Consensus 417 V~flGT~~G~l~Kvv~~~~~-~~~~ee~~~~~~~~pI~~l~l~~~~ 461 (663)
T 1olz_A 417 VMFVSTDRGALHKAISLEHA-VHIIEETQLFQDFEPVQTLLLSSKK 461 (663)
T ss_dssp EEEEEETTSEEEEEEECSSS-EEEEEEEECCTTCCCCCEEEECCSS
T ss_pred EEEEEcCCcEEEEEEecCCC-ceEEEEecccCCCCcceeeEeccCC
Confidence 68889999987544 33322 22233322 245689999999886
No 388
>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}
Probab=27.23 E-value=2.6e+02 Score=22.98 Aligned_cols=103 Identities=14% Similarity=0.029 Sum_probs=51.6
Q ss_pred CCEEEEEeCCCcEEEEEccC-CeEEEEe--ecCCCceEEEEeCC--CCeEEEEcCCC----eEEEEEcCCCCCCcccccc
Q 047325 166 CGLLYTASWDRTFKVWRISD-SKCLESV--SAHDDAVNSVVSSS--EGLIFTGSADG----TVKVWKREQHGKGTKHSLA 236 (368)
Q Consensus 166 ~~~l~~~~~d~~i~iwd~~~-~~~~~~~--~~~~~~v~~~~~~~--~~~l~~~~~dg----~i~i~d~~~~~~~~~~~~~ 236 (368)
...|.++...| +.+++... ++.-..+ ......|.+|++.| .+.+.+++..| .|... ...+........
T Consensus 22 ~g~l~vgt~~G-l~~~~~~~~g~~W~~~~~~~~~~~v~~i~~dp~~~~~l~~g~~~g~~g~gl~~s--~D~G~tW~~~~~ 98 (394)
T 3b7f_A 22 PVMLLVATIKG-AWFLASDPARRTWELRGPVFLGHTIHHIVQDPREPERMLMAARTGHLGPTVFRS--DDGGGNWTEATR 98 (394)
T ss_dssp CCEEEEEETTE-EEEEEECTTSCSEEEEEEESTTSEEEEEEECSSSTTCEEEEEEC--CCEEEEEE--SSTTSCCEECSB
T ss_pred CCEEEEEecCc-eEEEECCCCCCCceECCccCCCCceEEEEECCCCCCeEEEEecCCCCCccEEEe--CCCCCCceECCc
Confidence 34677788776 55555432 2221111 12345799999998 45666666555 44433 222221111110
Q ss_pred e-eecc--------ccccEEEEEEcCC--CCEEEEecCCCcEEEEe
Q 047325 237 Q-TLLK--------QECAVTALVVSSS--RSIVYCGSSDGLVNFWE 271 (368)
Q Consensus 237 ~-~~~~--------~~~~i~~~~~~~~--~~~l~~~~~dg~i~i~d 271 (368)
. .+.. ....|.++++.|. ...|.++...+.|...+
T Consensus 99 ~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~l~~g~~~ggl~~S~ 144 (394)
T 3b7f_A 99 PPAFNKAPEGETGRVVDHVFWLTPGHASEPGTWYAGTSPQGLFRST 144 (394)
T ss_dssp CCCCCCCC----CCCCCEEEEEEECCTTSTTCEEEEEETTEEEEES
T ss_pred cccCCCcccccccccccceeEEEeCCCCCCCEEEEEecCCcEEEEc
Confidence 0 0111 1135788999872 45666666666565543
No 389
>4gz8_A Semaphorin-3A; multi-domain, cell-CELL signaling, plexin, glycosilate extracellular, signaling protein; HET: NAG BMA MAN; 3.30A {Mus musculus}
Probab=26.58 E-value=3.1e+02 Score=24.99 Aligned_cols=61 Identities=23% Similarity=0.432 Sum_probs=37.1
Q ss_pred eEEEEcCCCeEE-EEEcCCCCC-Ccccccce--eeccccccEEEEEEcCCCCEEEEecCCCcEEE
Q 047325 209 LIFTGSADGTVK-VWKREQHGK-GTKHSLAQ--TLLKQECAVTALVVSSSRSIVYCGSSDGLVNF 269 (368)
Q Consensus 209 ~l~~~~~dg~i~-i~d~~~~~~-~~~~~~~~--~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i 269 (368)
.++.|+.+|.|. +........ ......+. .......+|..+.++++...|.+++.++.+++
T Consensus 431 VlFLGT~~G~I~Kvv~~~~~~~~~~~~~~leEi~v~~~~~pI~~L~ld~~~~~LYV~t~~~V~kV 495 (667)
T 4gz8_A 431 VMFIGTDVGTVLKVVSVPKETWHDLEEVLLEEMTVFREPTTISAMELSTKQQQLYIGSTAGVAQL 495 (667)
T ss_dssp EEEEEETTSEEEEEEEEC------CEEEEEEEEECSSSCCCCCEEEEETTTTEEEEEBSSCEEEE
T ss_pred EEEEECCCCeEEEEEEcCCCCccccceEEEEEEeecCCCceeeeEEEcCCCCEEEEEECCEEEEE
Confidence 688899999875 332221110 00011111 22235567889999999999999998886665
No 390
>3al9_A Plexin-A2; beta-propeller, membrane protein, signaling protein; HET: NAG; 2.10A {Mus musculus} PDB: 3al8_B*
Probab=24.87 E-value=91 Score=27.50 Aligned_cols=47 Identities=17% Similarity=0.215 Sum_probs=29.2
Q ss_pred CCEEEEeeCCCeEEEEecCCCc-e-eeeEeee--ccccCee-EEEEecCCee
Q 047325 296 GKLVFSGSADKTICVWRRDGAI-H-TCLSVLT--GHTGPVK-CLAVEEDRDS 342 (368)
Q Consensus 296 ~~~l~~~~~dg~i~iw~~~~~~-~-~~~~~~~--~h~~~v~-~l~~~~~~~~ 342 (368)
...++.|..+|.|.-..+.... . .....+. ....+|. .|.+++++..
T Consensus 413 ~tV~flGT~~G~l~KV~l~~~~~~~~~~e~~~v~~~~~pv~~~l~~~~~~~~ 464 (539)
T 3al9_A 413 YSVVFVGTKSGKLKKIRADGPPHGGVQYEMVSVFKDGSPILRDMAFSINQLY 464 (539)
T ss_dssp EEEEEEEETTSEEEEEEEEETTTEEEEEEEEECCTTCCCCCSCCEECTTSSE
T ss_pred eEEEEEEcCCCeEEEEEeCCCCccceeEEEEEeecCCCccccceEEccCCCe
Confidence 4568889999998766554321 1 1222222 2346785 8999998874
No 391
>3ol2_B Plexin-B1; beta-propeller, signalling, extacellular, signaling protein; HET: NAG BMA; 2.99A {Homo sapiens}
Probab=24.14 E-value=2.5e+02 Score=24.71 Aligned_cols=59 Identities=19% Similarity=0.272 Sum_probs=36.8
Q ss_pred eEEEEcCCCeEEEEEcCCCCCCcccccceeeccccccE-EEEEEcCCCCEEEEecCCCcEEE
Q 047325 209 LIFTGSADGTVKVWKREQHGKGTKHSLAQTLLKQECAV-TALVVSSSRSIVYCGSSDGLVNF 269 (368)
Q Consensus 209 ~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~i-~~~~~~~~~~~l~~~~~dg~i~i 269 (368)
.++.|+.+|.|.-.-+............ .+ ....+| ..+.++++...|+.++.++.+++
T Consensus 402 V~FlGT~~G~l~Kv~~~~~~~~~~~ee~-~v-~~~~pi~~~l~l~~~~~~Lyv~s~~~V~~v 461 (528)
T 3ol2_B 402 IAFLGDSQGQLHRVYLGPGSDGHPYSTQ-SI-QQGSAVSRDLTFDGTFEHLYVMTQSTLLKV 461 (528)
T ss_dssp EEEEEETTSEEEEEECSSSCCSCCSEEE-ES-STTSCCCSCCEECTTSSEEEEECSSCEEEE
T ss_pred EEEEECCCCeEEEEEEcCCCCeeEEeee-cc-CCCCcceeeEEEecCCCEEEEEeCCEEEEE
Confidence 6778889998875444322111111111 12 334567 47889999999999988887666
No 392
>1wp5_A Topoisomerase IV; broken beta-propeller, hairpin-invaded beta-propeller, six- bladed beta-propeller; 1.79A {Geobacillus stearothermophilus} SCOP: b.68.10.1
Probab=24.10 E-value=2.8e+02 Score=22.32 Aligned_cols=158 Identities=8% Similarity=0.069 Sum_probs=84.4
Q ss_pred CCEeEEEEcCCCCEEEEEeCCCcEEEEEcc---------CCeEEEE---eecCCCceEEE-EeCC---CCeEEEEcCCCe
Q 047325 155 DAVSCMSLDQDCGLLYTASWDRTFKVWRIS---------DSKCLES---VSAHDDAVNSV-VSSS---EGLIFTGSADGT 218 (368)
Q Consensus 155 ~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~---------~~~~~~~---~~~~~~~v~~~-~~~~---~~~l~~~~~dg~ 218 (368)
+.+..+........|+..+..|.+.-+... .|.++.. +. ....|.++ ...+ +.+++..+.+|.
T Consensus 39 D~l~~~~~~~t~d~ll~fT~~Gr~~~~~~~elp~~~r~a~G~~i~~~i~L~-~~e~Iv~~~~~~~~~~~~~ll~~T~~G~ 117 (323)
T 1wp5_A 39 DRLLAMLEMNTKDVLLLFTNKGNYLYCPVHELPDIRWKDLGQHIANIIPID-RDEEIIKAIPINDFELNGYFLFVTRNGM 117 (323)
T ss_dssp CCEEEEEEEETTSEEEEEETTSEEEEEEGGGSCBCCTTSCCEEGGGTSCCC-TTCCEEEEEEESCTTSSCEEEEEETTSE
T ss_pred CEEEEEEEECCCCEEEEEECCCEEEEEEHHHCcCCCCCCCCcChhhccCCC-CCCEEEEEEEecccCCCceEEEEeCCCe
Confidence 444444444455667777778876665542 2332222 22 23345544 3332 337889999999
Q ss_pred EEEEEcCCCCCCc--ccccceeeccccccEEEEEEcCCCCEEEEecCCCcEEEEeCCCccccce-------eeeccceEE
Q 047325 219 VKVWKREQHGKGT--KHSLAQTLLKQECAVTALVVSSSRSIVYCGSSDGLVNFWEREKQLSHGG-------VLKGHKLAV 289 (368)
Q Consensus 219 i~i~d~~~~~~~~--~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~-------~~~~~~~~~ 289 (368)
++-..+....... .......+... +.+..+........++..+.+|.+..++...-..... ........+
T Consensus 118 iKrt~l~e~~~~~r~~G~~ai~l~e~-d~lv~~~~~~~~~~i~l~T~~G~~irf~~~ev~~~gR~a~GV~~i~L~~~d~V 196 (323)
T 1wp5_A 118 VKKTELKHYKAQRYSKPLTGINLKND-DQVVDVHLTDGMNELFLVTHNGYALWFDESEVSIVGVRAAGVKGMNLKEGDYI 196 (323)
T ss_dssp EEEEEGGGGCCSCCSSCEECSCCCTT-CCEEEEEEECSCSEEEEEETTSEEEEEEGGGSCBCCSSCCCEECCCCCTTCCE
T ss_pred EEEeEHHHhhhccccCceEEEEeCCC-CEEEEEEEeCCCCEEEEEeCCCcEEEEEHHHCcccCCCCcCEEEEEeCCCCEE
Confidence 9999885432211 11111122222 4455555545556788888899988887643111100 000112233
Q ss_pred EEEE--eCCC-EEEEeeCCCeEEEEecC
Q 047325 290 LCLA--AAGK-LVFSGSADKTICVWRRD 314 (368)
Q Consensus 290 ~~~~--~~~~-~l~~~~~dg~i~iw~~~ 314 (368)
.++. .++. .|++.+..|..+..+++
T Consensus 197 v~~~~~~~~~~~ll~vt~~G~gKr~~~~ 224 (323)
T 1wp5_A 197 VSGQLITSKDESIVVATQRGAVKKMKLT 224 (323)
T ss_dssp EEEEEECCTTCEEEEEETTSEEEEEEGG
T ss_pred EEEEEEcCCCcEEEEEECCCceEEEEHH
Confidence 3332 2344 78888889988887764
No 393
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=24.08 E-value=5.2e+02 Score=25.39 Aligned_cols=34 Identities=9% Similarity=0.082 Sum_probs=27.2
Q ss_pred cEEEEEEcCCCCEEEEecCCCcEEEEeCCCcccc
Q 047325 245 AVTALVVSSSRSIVYCGSSDGLVNFWEREKQLSH 278 (368)
Q Consensus 245 ~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~ 278 (368)
.+.+++..++..++++-+.|+++++|++.++.+.
T Consensus 239 ~~vs~~~~~~~~~lftL~~D~~LRiWsl~t~~~v 272 (1139)
T 4fhn_B 239 TIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCV 272 (1139)
T ss_dssp CBSCCEEETTTTEEEEEBTTCEEEEEETTTTEEE
T ss_pred eeEEeeccCCccEEEEEeCCCEEEEEECCCCCeE
Confidence 3445566678889999999999999999887554
No 394
>1zvu_A Topoisomerase IV subunit A; beta-pinwheel, ATPase, supercoiling, decatenation, DNA bindi topology; 3.00A {Escherichia coli}
Probab=21.08 E-value=4.9e+02 Score=23.94 Aligned_cols=148 Identities=9% Similarity=-0.015 Sum_probs=71.3
Q ss_pred CCCCEEEEEeCCCcEEEEEccCCeEE----EEeecCCCceEEEEeCCCCeEEEEcCCCeEEEEEcCCCCC-Cccccccee
Q 047325 164 QDCGLLYTASWDRTFKVWRISDSKCL----ESVSAHDDAVNSVVSSSEGLIFTGSADGTVKVWKREQHGK-GTKHSLAQT 238 (368)
Q Consensus 164 ~~~~~l~~~~~d~~i~iwd~~~~~~~----~~~~~~~~~v~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~-~~~~~~~~~ 238 (368)
++....++-+.+|.|+-- .+..+ ..++..+.....+..+....++.-+..|.++-...-.-.. .....++..
T Consensus 470 ~~e~v~v~ls~~GyiKr~---~g~~~~~~~~~~k~~D~~~~~~~~~t~d~ll~ft~~Gr~y~~~~~~lP~~~~~G~~i~~ 546 (716)
T 1zvu_A 470 PSEPVTIVLSQMGWVRSA---KGHDIDAPGLNYKAGDSFKAAVKGKSNQPVVFVDSTGRSYAIDPITLPSARGQGEPLTG 546 (716)
T ss_dssp CCCCCCEEEETTTEEEEC---CC---------------CCEEECCCSSSCEEEEETTSEEEEECTTTSCCCC---CBSTT
T ss_pred CCceEEEEEecCCeEecc---CCCCcCccccccCCCCeEEEEEEecCCCEEEEEecCCcEEEEEeeecccccccCeeHHh
Confidence 456677888899998762 11111 1122222222222333333555566777755443321100 001111111
Q ss_pred e--ccccccEEEEEEcCCCCEEEEecCCCcEEEEeCCCcccc------ceeeeccceEE-EEEE-eCCCEEEEeeCCCeE
Q 047325 239 L--LKQECAVTALVVSSSRSIVYCGSSDGLVNFWEREKQLSH------GGVLKGHKLAV-LCLA-AAGKLVFSGSADKTI 308 (368)
Q Consensus 239 ~--~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~------~~~~~~~~~~~-~~~~-~~~~~l~~~~~dg~i 308 (368)
+ ......|..+....+..+++.++..|.++.-.+..-... ...+.....-+ .... ..+..++..+.+|..
T Consensus 547 ll~l~~~e~i~~~~~~~~~~~l~~~T~~G~vk~~~l~~~~~~~~~g~~ai~L~~~d~lv~~~~~~~~~~~v~l~t~~g~~ 626 (716)
T 1zvu_A 547 KLTLPPGATVDHMLMESDDQKLLMASDAGYGFVCTFNDLVARNRAGKALITLPENAHVMPPVVIEDASDMLLAITQAGRM 626 (716)
T ss_dssp TSCCCTTCCEEEEECCCTTCEEEEEBTTSEEEEEEGGGGCCCSTTCEECBCCCTTCCBCCCEECCCTTCEEEEEETTSEE
T ss_pred ccCCCCCCeEEEEEEecCCceEEEEeCCceEEEecHHHhcccCccceEEEeeCCCCEEEEEEEecCCCCEEEEEeCCCeE
Confidence 1 112345666655556778888999999998876532111 01111111111 1122 235578888999999
Q ss_pred EEEecC
Q 047325 309 CVWRRD 314 (368)
Q Consensus 309 ~iw~~~ 314 (368)
..|+..
T Consensus 627 lrf~~~ 632 (716)
T 1zvu_A 627 LMFPVS 632 (716)
T ss_dssp EEEEST
T ss_pred EEEEHH
Confidence 999764
No 395
>4gz8_A Semaphorin-3A; multi-domain, cell-CELL signaling, plexin, glycosilate extracellular, signaling protein; HET: NAG BMA MAN; 3.30A {Mus musculus}
Probab=20.77 E-value=2e+02 Score=26.24 Aligned_cols=46 Identities=11% Similarity=0.180 Sum_probs=27.2
Q ss_pred CEEEEeeCCCeEEE-EecCCCc-----eeeeEeee--ccccCeeEEEEecCCee
Q 047325 297 KLVFSGSADKTICV-WRRDGAI-----HTCLSVLT--GHTGPVKCLAVEEDRDS 342 (368)
Q Consensus 297 ~~l~~~~~dg~i~i-w~~~~~~-----~~~~~~~~--~h~~~v~~l~~~~~~~~ 342 (368)
..++.|..+|.|+- ....... ...+.++. ....+|..|.++++...
T Consensus 430 tVlFLGT~~G~I~Kvv~~~~~~~~~~~~~~leEi~v~~~~~pI~~L~ld~~~~~ 483 (667)
T 4gz8_A 430 DVMFIGTDVGTVLKVVSVPKETWHDLEEVLLEEMTVFREPTTISAMELSTKQQQ 483 (667)
T ss_dssp EEEEEEETTSEEEEEEEEC------CEEEEEEEEECSSSCCCCCEEEEETTTTE
T ss_pred EEEEEECCCCeEEEEEEcCCCCccccceEEEEEEeecCCCceeeeEEEcCCCCE
Confidence 36788999999753 3222111 11222222 35678999999998884
No 396
>3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens}
Probab=20.22 E-value=2.8e+02 Score=24.78 Aligned_cols=53 Identities=15% Similarity=0.164 Sum_probs=31.4
Q ss_pred EEEEeCCCEEEEeeCC------------CeEEEEecCCCceeeeEeeecc-ccCeeEEEEecCCeeee
Q 047325 290 LCLAAAGKLVFSGSAD------------KTICVWRRDGAIHTCLSVLTGH-TGPVKCLAVEEDRDSSS 344 (368)
Q Consensus 290 ~~~~~~~~~l~~~~~d------------g~i~iw~~~~~~~~~~~~~~~h-~~~v~~l~~~~~~~~~~ 344 (368)
++|++.|.+++.-..+ +.+.+.+...+ +....+.++ ...++.++|+||++.+.
T Consensus 481 L~fd~~G~LwI~eDg~~~~~~~~~~~gnn~~~~~~~~~g--~~~rf~~~P~gaE~TG~~fspDg~tlf 546 (592)
T 3zwu_A 481 LGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATG--EIRRFMVGPIGCEVTGISFSPDQKTLF 546 (592)
T ss_dssp EEECTTCCEEEEECCCCCCSGGGTTTCSCEEEEECTTTC--CEEEEEECCTTCEEEEEEECTTSSEEE
T ss_pred eEECCCCCEEEEecCCCcccccccccccceEEEEeCCCC--eEEEEEeCCCCccCcCeeECCCCCEEE
Confidence 6778888866654432 22344443333 333333333 45799999999998543
Done!