Query 047330
Match_columns 721
No_of_seqs 71 out of 73
Neff 2.2
Searched_HMMs 46136
Date Fri Mar 29 10:04:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047330.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/047330hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF13395 HNH_4: HNH endonuclea 98.2 7.1E-07 1.5E-11 70.7 1.8 38 124-161 17-54 (54)
2 PF01844 HNH: HNH endonuclease 98.0 1.2E-06 2.6E-11 65.0 -0.3 36 123-158 12-47 (47)
3 cd00085 HNHc HNH nucleases; HN 97.6 2E-05 4.3E-10 58.2 1.3 35 122-156 23-57 (57)
4 TIGR01865 cas_Csn1 CRISPR-asso 96.7 0.00053 1.1E-08 78.6 1.2 39 124-162 601-639 (805)
5 COG1403 McrA Restriction endon 96.5 0.0018 4E-08 55.6 3.0 53 124-176 81-133 (146)
6 smart00507 HNHc HNH nucleases. 96.4 0.0012 2.5E-08 48.0 0.8 29 124-152 23-51 (52)
7 PRK11295 hypothetical protein; 90.1 0.12 2.7E-06 48.1 1.0 37 122-158 39-75 (113)
8 TIGR02646 conserved hypothetic 83.0 0.71 1.5E-05 42.9 1.8 38 123-160 37-85 (144)
9 PF10186 Atg14: UV radiation r 76.5 75 0.0016 31.3 13.3 14 564-577 254-267 (302)
10 COG3513 Predicted CRISPR-assoc 72.6 1.4 3E-05 52.4 0.6 38 124-161 591-628 (1088)
11 PRK04863 mukB cell division pr 69.9 91 0.002 39.7 14.9 74 281-356 268-341 (1486)
12 PF09738 DUF2051: Double stran 67.4 36 0.00078 36.4 9.5 78 294-372 83-162 (302)
13 PF07510 DUF1524: Protein of u 66.5 2.3 4.9E-05 37.2 0.5 33 127-159 54-102 (142)
14 PF09726 Macoilin: Transmembra 66.2 99 0.0022 36.5 13.4 38 305-342 464-501 (697)
15 PF08232 Striatin: Striatin fa 62.3 13 0.00029 35.0 4.7 52 294-345 18-69 (134)
16 PF07926 TPR_MLP1_2: TPR/MLP1/ 62.1 1.3E+02 0.0029 27.8 12.1 104 308-422 3-107 (132)
17 KOG2077 JNK/SAPK-associated pr 60.3 35 0.00075 40.1 8.2 74 280-353 320-407 (832)
18 smart00338 BRLZ basic region l 58.9 28 0.00061 28.4 5.5 38 305-342 23-60 (65)
19 PF00170 bZIP_1: bZIP transcri 56.3 52 0.0011 26.8 6.6 49 294-342 12-60 (64)
20 COG1196 Smc Chromosome segrega 54.5 3.1E+02 0.0067 33.7 15.2 63 362-424 826-895 (1163)
21 KOG1029 Endocytic adaptor prot 52.1 95 0.0021 37.9 10.2 40 392-431 375-418 (1118)
22 KOG0977 Nuclear envelope prote 51.1 3E+02 0.0064 32.2 13.6 119 289-411 93-230 (546)
23 PF08317 Spc7: Spc7 kinetochor 49.4 73 0.0016 33.5 8.0 63 289-351 210-273 (325)
24 KOG2183 Prolylcarboxypeptidase 48.7 25 0.00054 39.9 4.7 59 64-145 373-438 (492)
25 PF05384 DegS: Sensor protein 45.9 1.6E+02 0.0035 29.1 9.3 91 300-424 26-116 (159)
26 PF11932 DUF3450: Protein of u 44.1 1.2E+02 0.0025 30.6 8.3 78 301-381 49-129 (251)
27 PF05667 DUF812: Protein of un 42.7 3.4E+02 0.0074 31.7 12.5 52 13-70 44-111 (594)
28 KOG0155 Transcription factor C 41.3 1.1E+02 0.0024 35.7 8.4 62 333-407 459-520 (617)
29 COG3667 PcoB Uncharacterized p 41.0 7.4 0.00016 41.7 -0.6 67 97-173 103-190 (321)
30 KOG0837 Transcriptional activa 39.1 92 0.002 33.6 6.9 136 195-347 103-259 (279)
31 TIGR02169 SMC_prok_A chromosom 38.6 7.2E+02 0.016 29.2 15.9 13 171-183 116-128 (1164)
32 PF05275 CopB: Copper resistan 38.2 20 0.00044 36.5 2.0 48 118-175 19-78 (210)
33 PF04568 IATP: Mitochondrial A 38.0 71 0.0015 29.6 5.2 51 288-338 45-99 (100)
34 cd07598 BAR_FAM92 The Bin/Amph 37.9 4.5E+02 0.0098 26.7 12.8 75 290-371 99-186 (211)
35 KOG0804 Cytoplasmic Zn-finger 35.9 3.7E+02 0.0079 31.2 11.1 89 312-400 358-457 (493)
36 PF06098 Radial_spoke_3: Radia 34.9 3.1E+02 0.0067 29.5 10.0 98 257-357 98-200 (291)
37 PF09325 Vps5: Vps5 C terminal 34.8 4.3E+02 0.0092 25.5 13.2 74 344-418 80-154 (236)
38 smart00787 Spc7 Spc7 kinetocho 34.0 83 0.0018 33.6 5.7 62 292-353 208-270 (312)
39 PF15294 Leu_zip: Leucine zipp 33.9 2.7E+02 0.0058 30.0 9.3 16 401-416 238-253 (278)
40 PF07716 bZIP_2: Basic region 32.2 1E+02 0.0022 24.7 4.6 30 306-335 23-52 (54)
41 PRK04863 mukB cell division pr 31.7 9.4E+02 0.02 31.3 14.8 31 594-624 607-637 (1486)
42 PF12325 TMF_TATA_bd: TATA ele 31.4 2E+02 0.0044 27.2 7.2 16 349-364 75-90 (120)
43 PF06409 NPIP: Nuclear pore co 30.4 2E+02 0.0044 30.8 7.6 59 303-361 93-153 (265)
44 PRK10361 DNA recombination pro 29.5 9.3E+02 0.02 27.8 15.5 88 307-397 59-148 (475)
45 PF14505 DUF4438: Domain of un 29.3 32 0.00068 36.5 1.7 29 104-132 2-39 (258)
46 PRK11091 aerobic respiration c 28.7 2.8E+02 0.0061 31.4 9.0 79 303-389 105-187 (779)
47 KOG0933 Structural maintenance 28.5 1.3E+03 0.029 29.4 14.7 113 305-422 688-831 (1174)
48 PF12297 EVC2_like: Ellis van 28.4 9.6E+02 0.021 27.6 13.1 214 198-436 119-357 (429)
49 TIGR02895 spore_sigI RNA polym 26.9 1.6E+02 0.0034 30.0 6.0 73 289-368 102-174 (218)
50 smart00338 BRLZ basic region l 26.8 1.9E+02 0.0042 23.6 5.5 47 292-338 17-63 (65)
51 PRK10884 SH3 domain-containing 26.2 4.4E+02 0.0096 26.9 9.0 42 282-328 79-120 (206)
52 PRK13729 conjugal transfer pil 25.9 2.4E+02 0.0052 32.5 7.7 64 282-345 57-120 (475)
53 TIGR03319 YmdA_YtgF conserved 25.7 6E+02 0.013 29.1 10.8 25 553-577 295-323 (514)
54 PF12329 TMF_DNA_bd: TATA elem 25.6 1.6E+02 0.0036 25.4 5.1 28 296-323 28-55 (74)
55 cd07653 F-BAR_CIP4-like The F- 25.5 6.1E+02 0.013 25.1 9.7 77 300-379 111-202 (251)
56 PF10168 Nup88: Nuclear pore c 25.3 8.3E+02 0.018 29.2 12.2 57 315-371 565-625 (717)
57 PF05377 FlaC_arch: Flagella a 25.2 99 0.0021 26.3 3.6 34 305-338 4-37 (55)
58 PF04201 TPD52: Tumour protein 25.1 1.8E+02 0.0039 29.3 5.9 22 301-322 29-50 (162)
59 PF09304 Cortex-I_coil: Cortex 25.1 3E+02 0.0066 26.2 7.1 34 313-346 42-75 (107)
60 PF05622 HOOK: HOOK protein; 25.1 24 0.00052 40.5 0.0 77 307-383 266-358 (713)
61 KOG0250 DNA repair protein RAD 24.8 1.5E+03 0.032 29.0 14.2 51 293-343 280-330 (1074)
62 PF10481 CENP-F_N: Cenp-F N-te 24.6 96 0.0021 33.7 4.2 41 308-348 18-58 (307)
63 KOG0161 Myosin class II heavy 24.2 1.5E+03 0.033 30.6 14.9 120 41-172 497-618 (1930)
64 PF00170 bZIP_1: bZIP transcri 24.1 2.5E+02 0.0054 22.9 5.7 49 290-338 15-63 (64)
65 PRK11637 AmiB activator; Provi 23.7 9.6E+02 0.021 26.1 15.3 11 388-398 169-179 (428)
66 PF06456 Arfaptin: Arfaptin-li 23.6 6.6E+02 0.014 25.9 9.8 75 331-405 32-108 (229)
67 PF07716 bZIP_2: Basic region 23.1 1.1E+02 0.0024 24.4 3.4 36 290-325 14-49 (54)
68 PF06305 DUF1049: Protein of u 22.9 1.6E+02 0.0034 23.8 4.3 26 295-320 42-67 (68)
69 PF03904 DUF334: Domain of unk 22.9 7.5E+02 0.016 26.4 10.0 81 316-403 44-125 (230)
70 PRK11578 macrolide transporter 22.7 9E+02 0.019 25.4 10.8 21 333-353 117-137 (370)
71 PRK11637 AmiB activator; Provi 22.7 1E+03 0.022 25.9 15.1 6 537-542 306-311 (428)
72 PRK14162 heat shock protein Gr 22.5 1.7E+02 0.0036 29.8 5.2 44 306-349 37-80 (194)
73 PF01544 CorA: CorA-like Mg2+ 22.5 7.3E+02 0.016 24.2 11.0 69 282-352 104-174 (292)
74 PRK04778 septation ring format 22.4 1.2E+03 0.026 26.6 13.2 126 300-434 382-513 (569)
75 cd07621 BAR_SNX5_6 The Bin/Amp 22.1 9E+02 0.019 25.1 10.5 60 351-411 86-146 (219)
76 PF15346 ARGLU: Arginine and g 21.8 8.1E+02 0.017 24.4 10.4 44 314-357 61-105 (149)
77 TIGR01005 eps_transp_fam exopo 21.6 9.4E+02 0.02 27.9 11.5 115 305-428 205-338 (754)
78 COG5283 Phage-related tail pro 21.3 7.4E+02 0.016 31.8 11.1 116 296-412 87-232 (1213)
79 PRK00888 ftsB cell division pr 21.0 1.5E+02 0.0032 27.2 4.2 31 304-334 30-60 (105)
80 PTZ00121 MAEBL; Provisional 20.6 1.4E+03 0.03 30.7 13.1 12 378-389 1258-1269(2084)
81 PF04156 IncA: IncA protein; 20.3 4.9E+02 0.011 24.8 7.7 66 300-365 122-191 (191)
No 1
>PF13395 HNH_4: HNH endonuclease
Probab=98.18 E-value=7.1e-07 Score=70.66 Aligned_cols=38 Identities=39% Similarity=0.471 Sum_probs=36.2
Q ss_pred eeecceeeecCCCCcccccchhhhhHhhhcccCCCCcc
Q 047330 124 AWEIDHWFPCSRGGLTVPSNLRILQWQVCKRKHNKPEF 161 (721)
Q Consensus 124 gWEIDHIfP~SRGG~Tv~sNLQiLQWqvNr~KsNKle~ 161 (721)
-++||||+|+|+||.....||.+.+-.+|+.|+||+.|
T Consensus 17 ~~~iDHiiP~s~~~~~s~~Nlvl~~~~~N~~K~~k~P~ 54 (54)
T PF13395_consen 17 KYEIDHIIPRSRGGDDSFWNLVLCCKECNRSKGNKTPF 54 (54)
T ss_pred CceeEEEecccccCCCCcchhheECHHHhhcccccCCC
Confidence 48999999999999999999999999999999999875
No 2
>PF01844 HNH: HNH endonuclease; InterPro: IPR002711 HNH endonuclease is found in bacteria and viruses [, , ]. This family includes pyocins, colicins and anaredoxins.; GO: 0003676 nucleic acid binding, 0004519 endonuclease activity; PDB: 2QGP_C.
Probab=97.98 E-value=1.2e-06 Score=64.99 Aligned_cols=36 Identities=31% Similarity=0.439 Sum_probs=28.3
Q ss_pred ceeecceeeecCCCCcccccchhhhhHhhhcccCCC
Q 047330 123 LAWEIDHWFPCSRGGLTVPSNLRILQWQVCKRKHNK 158 (721)
Q Consensus 123 LgWEIDHIfP~SRGG~Tv~sNLQiLQWqvNr~KsNK 158 (721)
..|++|||.|++.||.++++||++|.+..|+.|++|
T Consensus 12 ~~~~v~Hi~~~~~gg~~~~~Nl~~lC~~Ch~~k~~k 47 (47)
T PF01844_consen 12 ESLHVHHIIPRSKGGKNDLENLILLCPSCHRKKHDK 47 (47)
T ss_dssp -GEEEEESS-TTTT---STTTEEEEEHHHHHHHH--
T ss_pred cceEeECcCchhcCCCCCHHHHHHHhHHHHHHhcCC
Confidence 579999999999999999999999999999999875
No 3
>cd00085 HNHc HNH nucleases; HNH endonuclease signature which is found in viral, prokaryotic, and eukaryotic proteins. The alignment includes members of the large group of homing endonucleases, yeast intron 1 protein, MutS, as well as bacterial colicins, pyocins, and anaredoxins.
Probab=97.64 E-value=2e-05 Score=58.22 Aligned_cols=35 Identities=34% Similarity=0.488 Sum_probs=32.3
Q ss_pred CceeecceeeecCCCCcccccchhhhhHhhhcccC
Q 047330 122 PLAWEIDHWFPCSRGGLTVPSNLRILQWQVCKRKH 156 (721)
Q Consensus 122 pLgWEIDHIfP~SRGG~Tv~sNLQiLQWqvNr~Ks 156 (721)
+-.|++|||.|++.||.+.++||++|.+..|+.|.
T Consensus 23 ~~~~~v~Hi~p~~~~~~~~~~Nl~~~c~~ch~~~~ 57 (57)
T cd00085 23 TEGLEVDHIIPLSDGGNNDLDNLVLLCRKCHRKKH 57 (57)
T ss_pred CCCceEEeecchhhCCCCchHHhHHHHHHHhhccC
Confidence 35799999999999999999999999999998874
No 4
>TIGR01865 cas_Csn1 CRISPR-associated protein, Csn1 family. CRISPR loci appear to be mobile elements with a wide host range. This model represents a protein found only in CRISPR-containing species, near other CRISPR-associated proteins (cas), as part of the NMENI subtype of CRISPR/Cas locus. The species range so far for this protein is animal pathogens and commensals only.
Probab=96.73 E-value=0.00053 Score=78.55 Aligned_cols=39 Identities=26% Similarity=0.242 Sum_probs=36.9
Q ss_pred eeecceeeecCCCCcccccchhhhhHhhhcccCCCCccc
Q 047330 124 AWEIDHWFPCSRGGLTVPSNLRILQWQVCKRKHNKPEFV 162 (721)
Q Consensus 124 gWEIDHIfP~SRGG~Tv~sNLQiLQWqvNr~KsNKle~l 162 (721)
.++||||+|+|+||.+..+|+-+.+-.+|+.|+|++.+-
T Consensus 601 ~~~iDHIiP~s~~~dds~~N~vl~~~~~N~~K~~~tp~e 639 (805)
T TIGR01865 601 YYEIDHILPQSRSFDDSISNKVLVLASENQEKGDQTPYE 639 (805)
T ss_pred CCceeeecccccCCCCcHHHHHHHhHHHHhhccCCCHHH
Confidence 378999999999999999999999999999999999884
No 5
>COG1403 McrA Restriction endonuclease [Defense mechanisms]
Probab=96.54 E-value=0.0018 Score=55.59 Aligned_cols=53 Identities=23% Similarity=0.120 Sum_probs=47.1
Q ss_pred eeecceeeecCCCCcccccchhhhhHhhhcccCCCCcccccccccccccchhh
Q 047330 124 AWEIDHWFPCSRGGLTVPSNLRILQWQVCKRKHNKPEFVVPWWDLQLGISVNQ 176 (721)
Q Consensus 124 gWEIDHIfP~SRGG~Tv~sNLQiLQWqvNr~KsNKle~lvpWwdLqlg~SvnQ 176 (721)
..++|||+|.+.||.+.-+||++|+..+|..|++++.--.+.+.++.+..+..
T Consensus 81 ~~~~dHiip~~~g~~~~~~Nl~~lc~~c~~~k~~~~~~~~~~~~~~~~~~~~~ 133 (146)
T COG1403 81 DLEVDHIVPLSRGGASAWENLETLCERCHNKKGSRLPGKAGMKLRVKPRKPEV 133 (146)
T ss_pred CCceeeEeecccCCcchHHHHHHHHHhhcccccccchhhccCcccccccCCch
Confidence 78999999999999999999999999999999999988888777777666554
No 6
>smart00507 HNHc HNH nucleases.
Probab=96.41 E-value=0.0012 Score=47.99 Aligned_cols=29 Identities=34% Similarity=0.407 Sum_probs=26.8
Q ss_pred eeecceeeecCCCCcccccchhhhhHhhh
Q 047330 124 AWEIDHWFPCSRGGLTVPSNLRILQWQVC 152 (721)
Q Consensus 124 gWEIDHIfP~SRGG~Tv~sNLQiLQWqvN 152 (721)
.|++|||.|.+.||.+.++||++|....|
T Consensus 23 ~~~v~Hi~p~~~~~~~~~~Nl~~~c~~ch 51 (52)
T smart00507 23 GLEVDHIIPLSDGGNDDLDNLVLLCPKCH 51 (52)
T ss_pred CeEEEecCChhcCCCCChHhCeecChhhC
Confidence 69999999999999999999999987765
No 7
>PRK11295 hypothetical protein; Provisional
Probab=90.14 E-value=0.12 Score=48.10 Aligned_cols=37 Identities=16% Similarity=0.055 Sum_probs=32.8
Q ss_pred CceeecceeeecCCCCcccccchhhhhHhhhcccCCC
Q 047330 122 PLAWEIDHWFPCSRGGLTVPSNLRILQWQVCKRKHNK 158 (721)
Q Consensus 122 pLgWEIDHIfP~SRGG~Tv~sNLQiLQWqvNr~KsNK 158 (721)
..+..||||.|...|+..+.+|||.|++.+..+|..+
T Consensus 39 ~~a~vVDHIip~~~gd~~D~sNLQ~LC~~CHn~kh~R 75 (113)
T PRK11295 39 LRELTVHHIDHDHDNNPEDGSNWELLCLYCHDHEHSK 75 (113)
T ss_pred CCCceeeccCCCCCCCCCchhHHHHHhHHHHhHHHhh
Confidence 3578999999999999999999999999998887654
No 8
>TIGR02646 conserved hypothetical protein TIGR02646. Members of this uncharacterized protein family are found exclusively in bacteria. Neighboring genes in various genomes are also uncharacterized or may annotated as similar to restriction system proteins.
Probab=82.98 E-value=0.71 Score=42.90 Aligned_cols=38 Identities=24% Similarity=0.067 Sum_probs=32.4
Q ss_pred ceeecceeeecCCCCcccc--cchhhhhHh---------hhcccCCCCc
Q 047330 123 LAWEIDHWFPCSRGGLTVP--SNLRILQWQ---------VCKRKHNKPE 160 (721)
Q Consensus 123 LgWEIDHIfP~SRGG~Tv~--sNLQiLQWq---------vNr~KsNKle 160 (721)
-.++||||.|.+..+..+. +||.+.+-. +|+.|+|+..
T Consensus 37 ~~~~ieH~~Pk~~~~~~~~~~~NL~~sC~~~n~~~~~~~Cn~~K~~~~~ 85 (144)
T TIGR02646 37 LGSHIEHFRPKGAYPPLTLDWSNLFGSCHRESKQGNPLHCGRFKDNSCG 85 (144)
T ss_pred CCcceeeecccCCChhhhcChhhchhhccccCCCCCccccccccccccc
Confidence 4689999999999888776 999999998 8888877744
No 9
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=76.47 E-value=75 Score=31.26 Aligned_cols=14 Identities=21% Similarity=0.199 Sum_probs=8.0
Q ss_pred CCcHHHHHHHHHhh
Q 047330 564 KGNVERWLQMLLEN 577 (721)
Q Consensus 564 KGNVekWLqmLlEn 577 (721)
+...+.++-+|--|
T Consensus 254 ~~~f~~~v~lLn~n 267 (302)
T PF10186_consen 254 RQRFEYAVFLLNKN 267 (302)
T ss_pred HHHHHHHHHHHHHH
Confidence 34566666666544
No 10
>COG3513 Predicted CRISPR-associated nuclease, contains McrA/HNH-nuclease and RuvC-like nuclease domain [Defense mechanisms]
Probab=72.58 E-value=1.4 Score=52.39 Aligned_cols=38 Identities=26% Similarity=0.247 Sum_probs=34.4
Q ss_pred eeecceeeecCCCCcccccchhhhhHhhhcccCCCCcc
Q 047330 124 AWEIDHWFPCSRGGLTVPSNLRILQWQVCKRKHNKPEF 161 (721)
Q Consensus 124 gWEIDHIfP~SRGG~Tv~sNLQiLQWqvNr~KsNKle~ 161 (721)
-+|||||+|+|+-=-+-.+|.-..-..-|+.|+|.+++
T Consensus 591 ~~eIDHi~P~Sr~~DDS~~NkVLv~s~~Nq~KgnqtP~ 628 (1088)
T COG3513 591 YYEIDHIVPQSRTWDDSIDNKVLVLSSENQEKGNQTPY 628 (1088)
T ss_pred ceeeceeccccccccccccceeEEeccccccccCCCCH
Confidence 38999999999988888999999999999999999854
No 11
>PRK04863 mukB cell division protein MukB; Provisional
Probab=69.86 E-value=91 Score=39.69 Aligned_cols=74 Identities=11% Similarity=0.122 Sum_probs=39.2
Q ss_pred CCCCChHHHHHHhhhhHHhHHHHHHHHHHHHHhHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 047330 281 DFVTNPYQAIVAARDSLKQREETQKMQMEIQKLNEEVTDMRRANDEEKLDIQDLELELIKRRRRAEKCRQLAEAQS 356 (721)
Q Consensus 281 D~v~NPyqaIv~ARDslkqree~~~~q~e~~~l~~e~~~~k~~n~~er~~iq~le~~likrrrr~ekcrrlaeaqs 356 (721)
.||+.+| +..|-+-...=||+.+...+..+...++....++..+-.--+.+|+..|.+-++-+++.+++-+...
T Consensus 268 ~~~aad~--~r~~eERR~liEEAag~r~rk~eA~kkLe~tE~nL~rI~diL~ELe~rL~kLEkQaEkA~kyleL~e 341 (1486)
T PRK04863 268 NYVAADY--MRHANERRVHLEEALELRRELYTSRRQLAAEQYRLVEMARELAELNEAESDLEQDYQAASDHLNLVQ 341 (1486)
T ss_pred hhhHHHH--hhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4777777 3344444444455554444444444444444444444334456666666666666666665544433
No 12
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=67.42 E-value=36 Score=36.38 Aligned_cols=78 Identities=28% Similarity=0.329 Sum_probs=60.7
Q ss_pred hhhHHhHHHHHHHHH-HHHHhHHHHHHHHhccccccchHHHHHHHHHHHHHH-HHHHHHHHHHhhhHHHHHHHHHHHhhh
Q 047330 294 RDSLKQREETQKMQM-EIQKLNEEVTDMRRANDEEKLDIQDLELELIKRRRR-AEKCRQLAEAQSSYRTMLEKMIRDAMH 371 (721)
Q Consensus 294 RDslkqree~~~~q~-e~~~l~~e~~~~k~~n~~er~~iq~le~~likrrrr-~ekcrrlaeaqssyr~~lekmirdamh 371 (721)
||+|+.=||.=++-+ .-+.||||-+.|..+.+-=+=.+-+||-+|.--+|. .||||-+ |.|--|..+|...+.+..+
T Consensus 83 k~~l~evEekyrkAMv~naQLDNek~~l~yqvd~Lkd~lee~eE~~~~~~re~~eK~~el-Er~K~~~d~L~~e~~~Lre 161 (302)
T PF09738_consen 83 KDSLAEVEEKYRKAMVSNAQLDNEKSALMYQVDLLKDKLEELEETLAQLQREYREKIREL-ERQKRAHDSLREELDELRE 161 (302)
T ss_pred HHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH
Confidence 999999998865443 567899999999998888888889999888755544 5788875 8888888888777665544
Q ss_pred h
Q 047330 372 Q 372 (721)
Q Consensus 372 q 372 (721)
|
T Consensus 162 ~ 162 (302)
T PF09738_consen 162 Q 162 (302)
T ss_pred H
Confidence 4
No 13
>PF07510 DUF1524: Protein of unknown function (DUF1524); InterPro: IPR011089 The family contains RloF from Campylobacter jejuni, its function and those of the other members are unknown.
Probab=66.54 E-value=2.3 Score=37.16 Aligned_cols=33 Identities=30% Similarity=0.394 Sum_probs=28.6
Q ss_pred cceeeecCCCCc----------------ccccchhhhhHhhhcccCCCC
Q 047330 127 IDHWFPCSRGGL----------------TVPSNLRILQWQVCKRKHNKP 159 (721)
Q Consensus 127 IDHIfP~SRGG~----------------Tv~sNLQiLQWqvNr~KsNKl 159 (721)
|+||+|.+.... ..+-||.+|....|.+++|+.
T Consensus 54 iEHI~Pq~~~~~~~~~~~~~~~~~~~~~~~igNL~LL~~~~N~~~~n~~ 102 (142)
T PF07510_consen 54 IEHIFPQNPKKESKSEKDWDEEEREIYLNSIGNLTLLSKSLNSSISNKP 102 (142)
T ss_pred eEeeccCCCCcccccccccCHHHHHHHhcccccEEEeccchhhccchhh
Confidence 999999998664 358899999999999999963
No 14
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=66.25 E-value=99 Score=36.47 Aligned_cols=38 Identities=24% Similarity=0.473 Sum_probs=30.2
Q ss_pred HHHHHHHHhHHHHHHHHhccccccchHHHHHHHHHHHH
Q 047330 305 KMQMEIQKLNEEVTDMRRANDEEKLDIQDLELELIKRR 342 (721)
Q Consensus 305 ~~q~e~~~l~~e~~~~k~~n~~er~~iq~le~~likrr 342 (721)
.+|.+...|++.+.+|.+.-..||.+|+.||..|.--|
T Consensus 464 qlr~ene~Lq~Kl~~L~~aRq~DKq~l~~LEkrL~eE~ 501 (697)
T PF09726_consen 464 QLRQENEQLQNKLQNLVQARQQDKQSLQQLEKRLAEER 501 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36677777888888888888889999999998876544
No 15
>PF08232 Striatin: Striatin family; InterPro: IPR013258 This domain is associated with the N terminus of striatin. Striatin is an intracellular protein which has a caveolin-binding motif, a coiled-coil structure, a calmodulin-binding site, and a WD (IPR001680 from INTERPRO) repeat domain []. It acts as a scaffold protein [] and is involved in signalling pathways [, ].
Probab=62.26 E-value=13 Score=34.99 Aligned_cols=52 Identities=25% Similarity=0.243 Sum_probs=42.4
Q ss_pred hhhHHhHHHHHHHHHHHHHhHHHHHHHHhccccccchHHHHHHHHHHHHHHH
Q 047330 294 RDSLKQREETQKMQMEIQKLNEEVTDMRRANDEEKLDIQDLELELIKRRRRA 345 (721)
Q Consensus 294 RDslkqree~~~~q~e~~~l~~e~~~~k~~n~~er~~iq~le~~likrrrr~ 345 (721)
||--.-=-|..+|++.|+.|+-|.+.++.-+..-.--|.-||..|.+-|-+.
T Consensus 18 rdR~~WeiERaEmkarIa~LEGE~r~~e~l~~dL~rrIkMLE~aLkqER~k~ 69 (134)
T PF08232_consen 18 RDRNQWEIERAEMKARIAFLEGERRGQENLKKDLKRRIKMLEYALKQERAKY 69 (134)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3333344577899999999999999999999888888999999998877553
No 16
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=62.09 E-value=1.3e+02 Score=27.80 Aligned_cols=104 Identities=28% Similarity=0.335 Sum_probs=60.2
Q ss_pred HHHHHhHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHH-HHHHHhhhHHHHHHHHHHHhhhhchhhHHHHhhhHHH
Q 047330 308 MEIQKLNEEVTDMRRANDEEKLDIQDLELELIKRRRRAEKCR-QLAEAQSSYRTMLEKMIRDAMHQSVIYKEQVRLNQVA 386 (721)
Q Consensus 308 ~e~~~l~~e~~~~k~~n~~er~~iq~le~~likrrrr~ekcr-rlaeaqssyr~~lekmirdamhqsv~ykeq~rlnqaa 386 (721)
.++..|..++..++.. +.+++..+...|.-.++.. .+.+||.+|-.=|-+=-.+ +-.---+++|+--.+..
T Consensus 3 ~e~~~l~~e~~~~~~~-------~~~~~~~~~~~~~dl~~q~~~a~~Aq~~YE~El~~Ha~~-~~~L~~lr~e~~~~~~~ 74 (132)
T PF07926_consen 3 SELSSLQSELQRLKEQ-------EEDAEEQLQSLREDLESQAKIAQEAQQKYERELVKHAED-IKELQQLREELQELQQE 74 (132)
T ss_pred hHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH-HHHHHHHHHHHHHHHHH
Confidence 3445555555555443 3344455555555555544 4668999998766554443 44455577777767777
Q ss_pred HHHHHHHHHHHHHhhhhhHHHHHHhhcchHHHHHhh
Q 047330 387 TNALMARLEAQKAICDSAEKDLHKKFKQREEIEKQL 422 (721)
Q Consensus 387 ~~almarleaq~a~cd~se~~l~kky~~rd~le~qi 422 (721)
.+.|=+.+++.++.-+.++...- .++..|++.|
T Consensus 75 ~~~l~~~~~~a~~~l~~~e~sw~---~qk~~le~e~ 107 (132)
T PF07926_consen 75 INELKAEAESAKAELEESEASWE---EQKEQLEKEL 107 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHH---HHHHHHHHHH
Confidence 77776666666666655554432 3345555554
No 17
>KOG2077 consensus JNK/SAPK-associated protein-1 [Signal transduction mechanisms]
Probab=60.30 E-value=35 Score=40.14 Aligned_cols=74 Identities=26% Similarity=0.389 Sum_probs=53.5
Q ss_pred CCCCCChHHHHH--------HhhhhHHhHHHHH-HHHHHHHHhHHHHHHHHhccccccchHH-----HHHHHHHHHHHHH
Q 047330 280 PDFVTNPYQAIV--------AARDSLKQREETQ-KMQMEIQKLNEEVTDMRRANDEEKLDIQ-----DLELELIKRRRRA 345 (721)
Q Consensus 280 pD~v~NPyqaIv--------~ARDslkqree~~-~~q~e~~~l~~e~~~~k~~n~~er~~iq-----~le~~likrrrr~ 345 (721)
-+.|+|-.-|-| .-|+.|..+..++ |+|..|.+||+|+..+|++-++-|-... |+=+.-.||=-|+
T Consensus 320 LNiVKNDLIakVDeL~~E~~vLrgElea~kqak~Klee~i~elEEElk~~k~ea~~ar~~~~~~e~ddiPmAqRkRFTRv 399 (832)
T KOG2077|consen 320 LNIVKNDLIAKVDELTCEKDVLRGELEAVKQAKLKLEEKIRELEEELKKAKAEAEDARQKAKDDEDDDIPMAQRKRFTRV 399 (832)
T ss_pred HHHHHHHHHHHHHhhccHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccHHHHhhhHHH
Confidence 346777766554 2477777777777 8999999999999999988766554332 3345666777788
Q ss_pred HHHHHHHH
Q 047330 346 EKCRQLAE 353 (721)
Q Consensus 346 ekcrrlae 353 (721)
|-+|-|-|
T Consensus 400 EMaRVLMe 407 (832)
T KOG2077|consen 400 EMARVLME 407 (832)
T ss_pred HHHHHHHH
Confidence 98887665
No 18
>smart00338 BRLZ basic region leucin zipper.
Probab=58.87 E-value=28 Score=28.37 Aligned_cols=38 Identities=29% Similarity=0.440 Sum_probs=32.0
Q ss_pred HHHHHHHHhHHHHHHHHhccccccchHHHHHHHHHHHH
Q 047330 305 KMQMEIQKLNEEVTDMRRANDEEKLDIQDLELELIKRR 342 (721)
Q Consensus 305 ~~q~e~~~l~~e~~~~k~~n~~er~~iq~le~~likrr 342 (721)
++...+..|+.+|..|...|.+=+-.+..|+..+..-+
T Consensus 23 rKk~~~~~Le~~~~~L~~en~~L~~~~~~l~~e~~~lk 60 (65)
T smart00338 23 RKKAEIEELERKVEQLEAENERLKKEIERLRRELEKLK 60 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67788999999999999999988888888888776544
No 19
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=56.35 E-value=52 Score=26.83 Aligned_cols=49 Identities=24% Similarity=0.413 Sum_probs=37.4
Q ss_pred hhhHHhHHHHHHHHHHHHHhHHHHHHHHhccccccchHHHHHHHHHHHH
Q 047330 294 RDSLKQREETQKMQMEIQKLNEEVTDMRRANDEEKLDIQDLELELIKRR 342 (721)
Q Consensus 294 RDslkqree~~~~q~e~~~l~~e~~~~k~~n~~er~~iq~le~~likrr 342 (721)
|.-.-+|.=-.++...|..|+++|..|...|+.=+-.+..|+..+..-+
T Consensus 12 rNR~AAr~~R~RKk~~~~~Le~~~~~L~~en~~L~~~~~~L~~~~~~L~ 60 (64)
T PF00170_consen 12 RNREAARRSRQRKKQYIEELEEKVEELESENEELKKELEQLKKEIQSLK 60 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444445578889999999999999999988888888887766544
No 20
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=54.53 E-value=3.1e+02 Score=33.73 Aligned_cols=63 Identities=24% Similarity=0.287 Sum_probs=33.4
Q ss_pred HHHHHHHhhhhchhhHHHHhhh-------HHHHHHHHHHHHHHHHhhhhhHHHHHHhhcchHHHHHhhch
Q 047330 362 LEKMIRDAMHQSVIYKEQVRLN-------QVATNALMARLEAQKAICDSAEKDLHKKFKQREEIEKQLRP 424 (721)
Q Consensus 362 lekmirdamhqsv~ykeq~rln-------qaa~~almarleaq~a~cd~se~~l~kky~~rd~le~qi~P 424 (721)
|+.-|...=++-.-+++++.-. +.....+...|+...+.=...+.+|-.....+++|+++++=
T Consensus 826 ~~~ei~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~l~~~~~~~~~l~~~l~~ 895 (1163)
T COG1196 826 LEQEIEELEEEIEELEEKLDELEEELEELEKELEELKEELEELEAEKEELEDELKELEEEKEELEEELRE 895 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444555555554421 22223333344444444555666777777777777777754
No 21
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=52.14 E-value=95 Score=37.88 Aligned_cols=40 Identities=40% Similarity=0.539 Sum_probs=26.0
Q ss_pred HHHHHHHHhhhhhH----HHHHHhhcchHHHHHhhchhHHhhhh
Q 047330 392 ARLEAQKAICDSAE----KDLHKKFKQREEIEKQLRPEREHARK 431 (721)
Q Consensus 392 arleaq~a~cd~se----~~l~kky~~rd~le~qi~Pe~eq~RK 431 (721)
++||-||-|----| |++.++=--|.+||+|=+=+||++|.
T Consensus 375 kqLerQReiE~qrEEerkkeie~rEaar~ElEkqRqlewErar~ 418 (1118)
T KOG1029|consen 375 KQLERQREIERQREEERKKEIERREAAREELEKQRQLEWERARR 418 (1118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555544433333 34555556678999999999999874
No 22
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=51.14 E-value=3e+02 Score=32.21 Aligned_cols=119 Identities=25% Similarity=0.401 Sum_probs=71.2
Q ss_pred HHHHhhhhHHhHHH-HHHHHHHHHHhHHHHHHHHhccccc--------------cchHHHHHHH--HHHHHHHH--HHHH
Q 047330 289 AIVAARDSLKQREE-TQKMQMEIQKLNEEVTDMRRANDEE--------------KLDIQDLELE--LIKRRRRA--EKCR 349 (721)
Q Consensus 289 aIv~ARDslkqree-~~~~q~e~~~l~~e~~~~k~~n~~e--------------r~~iq~le~~--likrrrr~--ekcr 349 (721)
-|+.||.-+..=.. ..+.+.+|.+|.+|+.+++.+.++- .-.|-+||+. +.|+|.+. +.-.
T Consensus 93 El~~ar~~l~e~~~~ra~~e~ei~kl~~e~~elr~~~~~~~k~~~~~re~~~~~~~~l~~leAe~~~~krr~~~le~e~~ 172 (546)
T KOG0977|consen 93 ELATARKLLDETARERAKLEIEITKLREELKELRKKLEKAEKERRGAREKLDDYLSRLSELEAEINTLKRRIKALEDELK 172 (546)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHH
Confidence 37778887775533 3378899999999999999887654 1234455554 44444432 3334
Q ss_pred HHHHHhhhHHHHHHHHHHHhhhhchhhHHHHhhhHHHHHHHHHHHHHHHHhhhhhHHHHHHh
Q 047330 350 QLAEAQSSYRTMLEKMIRDAMHQSVIYKEQVRLNQVATNALMARLEAQKAICDSAEKDLHKK 411 (721)
Q Consensus 350 rlaeaqssyr~~lekmirdamhqsv~ykeq~rlnqaa~~almarleaq~a~cd~se~~l~kk 411 (721)
+|.--.+-.+.-|.+ ||...||-++-+ + =+|..+.+|+-+|+..+-+-..-=+|++++
T Consensus 173 ~Lk~en~rl~~~l~~-~r~~ld~Etllr--~-d~~n~~q~Lleel~f~~~~h~~eI~e~~~~ 230 (546)
T KOG0977|consen 173 RLKAENSRLREELAR-ARKQLDDETLLR--V-DLQNRVQTLLEELAFLKRIHKQEIEEERRK 230 (546)
T ss_pred HHHHHhhhhHHHHHH-HHHHHHHHHHHH--H-HHHhHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 554444444444443 344455544432 1 245667888888888776655544555544
No 23
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=49.35 E-value=73 Score=33.49 Aligned_cols=63 Identities=24% Similarity=0.396 Sum_probs=40.0
Q ss_pred HHHHhhhhHHhHHH-HHHHHHHHHHhHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHHHH
Q 047330 289 AIVAARDSLKQREE-TQKMQMEIQKLNEEVTDMRRANDEEKLDIQDLELELIKRRRRAEKCRQL 351 (721)
Q Consensus 289 aIv~ARDslkqree-~~~~q~e~~~l~~e~~~~k~~n~~er~~iq~le~~likrrrr~ekcrrl 351 (721)
-+..+|..|..-.. -..+++++.+|+.++..++.+-++-...+++|...+..-.+..++||.|
T Consensus 210 eL~~lr~eL~~~~~~i~~~k~~l~el~~el~~l~~~i~~~~~~k~~l~~eI~e~~~~~~~~r~~ 273 (325)
T PF08317_consen 210 ELEALRQELAEQKEEIEAKKKELAELQEELEELEEKIEELEEQKQELLAEIAEAEKIREECRGW 273 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 34455555543332 3356666777777777777776666667777777777777777777764
No 24
>KOG2183 consensus Prolylcarboxypeptidase (angiotensinase C) [Posttranslational modification, protein turnover, chaperones; General function prediction only]
Probab=48.66 E-value=25 Score=39.93 Aligned_cols=59 Identities=22% Similarity=0.339 Sum_probs=43.4
Q ss_pred hhhcCCCCCCCCCCCChHHHHHHHHHhhcccCCCCCCCCcccccCCC-------CEEeeccCCCCCceeecceeeecCCC
Q 047330 64 EKMFPVIDPKAKPTAKPKIFLSLLWKQLNHLGNAGFDPAVIRVDPYG-------NVLYYHADSASPLAWEIDHWFPCSRG 136 (721)
Q Consensus 64 d~mFPv~~~~~~~~~nPr~F~~~~W~qldhlgnaG~DParwR~DAyG-------NVV~~had~~SpLgWEIDHIfP~SRG 136 (721)
+.|||.. +-|-..+.+.||+.-. | +..|.-|+.+.-| |+|+.+. |.=|||.|
T Consensus 373 ~~mf~~~------~fn~~~y~e~C~~~~~-v---~prP~wi~t~fgg~~l~~~SNiIFSNG-----------~LDPWSGG 431 (492)
T KOG2183|consen 373 DDMFPDC------PFNSESYQEGCMQTFG-V---TPRPKWITTEFGGADLSAFSNIIFSNG-----------LLDPWSGG 431 (492)
T ss_pred cccCCCC------CCCHHHHHHHHHHhcC-C---CCCCcceehhhccccchhhcceeeeCC-----------CcCCccCc
Confidence 4678753 3566889999999887 4 7889999999988 5554433 44599999
Q ss_pred Ccccccchh
Q 047330 137 GLTVPSNLR 145 (721)
Q Consensus 137 G~Tv~sNLQ 145 (721)
| ++.|+.
T Consensus 432 G--V~~nis 438 (492)
T KOG2183|consen 432 G--VLKNIS 438 (492)
T ss_pred C--eecccc
Confidence 9 666654
No 25
>PF05384 DegS: Sensor protein DegS; InterPro: IPR008595 This is a group of Bacillus DegS proteins. The DegS-DegU two-component regulatory system of Bacillus subtilis controls various processes that characterise the transition from the exponential to the stationary growth phase, including the induction of extracellular degradative enzymes, expression of late competence genes and down-regulation of the sigma D regulon []. The entry also contains one sequence Q8R9D3 from SWISSPROT from Thermoanaerobacter tengcongensis which is described as a sensory transduction histidine kinase.; GO: 0016301 kinase activity, 0007165 signal transduction
Probab=45.92 E-value=1.6e+02 Score=29.06 Aligned_cols=91 Identities=27% Similarity=0.514 Sum_probs=55.0
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhhchhhHHH
Q 047330 300 REETQKMQMEIQKLNEEVTDMRRANDEEKLDIQDLELELIKRRRRAEKCRQLAEAQSSYRTMLEKMIRDAMHQSVIYKEQ 379 (721)
Q Consensus 300 ree~~~~q~e~~~l~~e~~~~k~~n~~er~~iq~le~~likrrrr~ekcrrlaeaqssyr~~lekmirdamhqsv~ykeq 379 (721)
|.|-..++.||.++..+|.+.-.. +..||..-.+-| .||++.-.+|...-|.-|++|=-+.
T Consensus 26 R~E~~~l~~EL~evk~~v~~~I~e-------vD~Le~~er~aR------~rL~eVS~~f~~ysE~dik~AYe~A------ 86 (159)
T PF05384_consen 26 RQEYERLRKELEEVKEEVSEVIEE-------VDKLEKRERQAR------QRLAEVSRNFDRYSEEDIKEAYEEA------ 86 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHH------HHHHHHHhhhcccCHHHHHHHHHHH------
Confidence 444555555565555555543322 223343333333 4799999999999999999873221
Q ss_pred HhhhHHHHHHHHHHHHHHHHhhhhhHHHHHHhhcchHHHHHhhch
Q 047330 380 VRLNQVATNALMARLEAQKAICDSAEKDLHKKFKQREEIEKQLRP 424 (721)
Q Consensus 380 ~rlnqaa~~almarleaq~a~cd~se~~l~kky~~rd~le~qi~P 424 (721)
+. |.-+-++.-.-|+.|+++ ||+||+.++-
T Consensus 87 --------~~----lQ~~L~~~re~E~qLr~r---RD~LErrl~~ 116 (159)
T PF05384_consen 87 --------HE----LQVRLAMLREREKQLRER---RDELERRLRN 116 (159)
T ss_pred --------HH----HHHHHHHHHHHHHHHHHH---HHHHHHHHHH
Confidence 12 223345566678888865 8999987753
No 26
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=44.12 E-value=1.2e+02 Score=30.61 Aligned_cols=78 Identities=19% Similarity=0.348 Sum_probs=44.9
Q ss_pred HHHHHHHHHHHHhHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHh---hhhchhhH
Q 047330 301 EETQKMQMEIQKLNEEVTDMRRANDEEKLDIQDLELELIKRRRRAEKCRQLAEAQSSYRTMLEKMIRDA---MHQSVIYK 377 (721)
Q Consensus 301 ee~~~~q~e~~~l~~e~~~~k~~n~~er~~iq~le~~likrrrr~ekcrrlaeaqssyr~~lekmirda---mhqsv~yk 377 (721)
+++..+.+++..|..++..|+..|+.-.-.+.+++..+..-.++ ...+.+.+....-+|.+||... .+..+=|.
T Consensus 49 ~e~~~L~~e~~~l~~e~e~L~~~~~~l~~~v~~q~~el~~L~~q---i~~~~~~~~~l~p~m~~m~~~L~~~v~~d~Pf~ 125 (251)
T PF11932_consen 49 DEKQELLAEYRQLEREIENLEVYNEQLERQVASQEQELASLEQQ---IEQIEETRQELVPLMEQMIDELEQFVELDLPFL 125 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCC
Confidence 34556667777777777777777766666666666555544322 2344455555666667776542 23344455
Q ss_pred HHHh
Q 047330 378 EQVR 381 (721)
Q Consensus 378 eq~r 381 (721)
-+-|
T Consensus 126 ~~eR 129 (251)
T PF11932_consen 126 LEER 129 (251)
T ss_pred hHHH
Confidence 5544
No 27
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=42.67 E-value=3.4e+02 Score=31.72 Aligned_cols=52 Identities=23% Similarity=0.333 Sum_probs=33.8
Q ss_pred ccccCC--CChh--------------hhHHhhhccCCCCccccCCCCCCccccCCCChhhhHHHHhhhhhcCCC
Q 047330 13 AVDEGL--GYPK--------------AYAKICRDRSASGVGLCSHGPPFCFTPYPLQEDESSRAKQLEKMFPVI 70 (721)
Q Consensus 13 ~vd~~l--GyP~--------------ayaklCr~~~~~g~~p~~~GPP~~F~Py~~q~~e~~~~kdld~mFPv~ 70 (721)
.|||.+ |+|+ ..|..|.+.|.-|-.-| ++|| |.-..+--..+--|-+-+|--
T Consensus 44 ~I~p~~~~~l~~~lP~~msaRfr~~~~lA~~~k~lGy~~digy-----q~fL-Yp~e~~~R~ll~fLiekLP~~ 111 (594)
T PF05667_consen 44 VIDPSLGSSLPRSLPPGMSARFRVGTSLAQACKELGYRGDIGY-----QTFL-YPNEKDLRRLLMFLIEKLPRE 111 (594)
T ss_pred HhCccccCCCcccCChHHHHHHHHHHHHHHHHHHcCCCCCCcc-----hhhc-cCChHHHHHHHHHHHHHCCcc
Confidence 588998 7776 35678888876554333 6676 655555555555666666665
No 28
>KOG0155 consensus Transcription factor CA150 [Transcription]
Probab=41.29 E-value=1.1e+02 Score=35.69 Aligned_cols=62 Identities=34% Similarity=0.537 Sum_probs=42.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhhchhhHHHHhhhHHHHHHHHHHHHHHHHhhhhhHHH
Q 047330 333 DLELELIKRRRRAEKCRQLAEAQSSYRTMLEKMIRDAMHQSVIYKEQVRLNQVATNALMARLEAQKAICDSAEKD 407 (721)
Q Consensus 333 ~le~~likrrrr~ekcrrlaeaqssyr~~lekmirdamhqsv~ykeq~rlnqaa~~almarleaq~a~cd~se~~ 407 (721)
.|+.+|.-+-|-.||++| -||-++|++.|--|||+. -+++.|--|+ -|-+-|.|-|+--|+.
T Consensus 459 ~~~~q~~e~~rerek~k~-~e~~~~y~all~d~irs~---e~sw~e~rri---------lrkd~r~as~~~le~~ 520 (617)
T KOG0155|consen 459 ELGNQLRERTREREKQKR-GEAEDTYRALLIDLIRST---ENSWHEARRI---------LRKDERYASCDMLEKT 520 (617)
T ss_pred HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhCc---ccchHHhHHH---------hhcccccccCcccchH
Confidence 344445444444555554 799999999999999987 4667665443 3557788999876654
No 29
>COG3667 PcoB Uncharacterized protein involved in copper resistance [Inorganic ion transport and metabolism]
Probab=41.02 E-value=7.4 Score=41.66 Aligned_cols=67 Identities=31% Similarity=0.565 Sum_probs=37.0
Q ss_pred CCCCCCcccccCCCCEEe---------eccCCCCCceeecceee--------ecCCC----CcccccchhhhhHhhhccc
Q 047330 97 AGFDPAVIRVDPYGNVLY---------YHADSASPLAWEIDHWF--------PCSRG----GLTVPSNLRILQWQVCKRK 155 (721)
Q Consensus 97 aG~DParwR~DAyGNVV~---------~had~~SpLgWEIDHIf--------P~SRG----G~Tv~sNLQiLQWqvNr~K 155 (721)
+-|-|.+-++-..|..+. +++|..+-.+|+---|+ =.|.| |...-.-++.|
T Consensus 103 aAfpp~~~~~~H~~~l~s~v~~drlE~~~ad~g~a~AwdaqaWiGtdi~kl~lkaeGe~~~Gr~e~a~ve~L-------- 174 (321)
T COG3667 103 AAFPPAQGMKEHDGGLASIVRADRLEQRFADGGDAQAWDAQAWIGTDISKLVLKAEGERVDGRWEKAEVEGL-------- 174 (321)
T ss_pred hcCCccccccccCcceeeeeehhhhHHhhcCCCccceeeccceeccchhheeeeccCceeCcchhhhhhhhh--------
Confidence 456666665554443322 36677777888755554 34432 33222222222
Q ss_pred CCCCcccccccccccccc
Q 047330 156 HNKPEFVVPWWDLQLGIS 173 (721)
Q Consensus 156 sNKle~lvpWwdLqlg~S 173 (721)
+---+.||||||+|+-
T Consensus 175 --~gh~I~PwwD~~~GlR 190 (321)
T COG3667 175 --KGHAIGPWWDLQAGLR 190 (321)
T ss_pred --hcCccchHHHHhhhhh
Confidence 1134689999999985
No 30
>KOG0837 consensus Transcriptional activator of the JUN family [Transcription]
Probab=39.13 E-value=92 Score=33.55 Aligned_cols=136 Identities=21% Similarity=0.209 Sum_probs=75.6
Q ss_pred eecccccccccccccccccCCCchhhhhhhhhcCccccceeeccccccccccc--cccccccCCCCCCcccccccccCCC
Q 047330 195 YLFLEGENEEINASQTVESHSFPQHFVESKRKLGLAPAGIVVSRRELRDSALT--LRSLDYNRQIRSSSPAIASRKVKPG 272 (721)
Q Consensus 195 flF~eGe~eel~~~q~veshsfPqHf~e~k~kvgLApaaiv~Srr~~~d~~~~--l~sld~nr~~r~~~~~iaarK~~~~ 272 (721)
++|.+|=-.-+.++|...-. +.+++.+-+++++-..+ |.+.+| -+.+..++..++..+.-..+-+.+.
T Consensus 103 ~~fd~gf~~al~dlH~~n~~------~~stee~~~~~stg~~~----y~p~sv~~~~~~s~~gk~~~~~~a~~~~~~g~~ 172 (279)
T KOG0837|consen 103 YFFDPGFVMALDDLHPGNYR------YFSTEECQPVHSTGIVG----YSPTSVDQEAILSIGGKEGSRFAAKKSREVGMT 172 (279)
T ss_pred hhcccchhHhHhhcCccccc------cccccccccccccCccC----cCCccchhhhhhhccCCCCceeccccccccccc
Confidence 56667766666666665422 33455555555544433 444432 3455666655444432211111111
Q ss_pred ---C-cccC----CCCC-------CCCChHHHHHHhhhhHHhHHHHHH----HHHHHHHhHHHHHHHHhccccccchHHH
Q 047330 273 ---V-LKEN----ETPD-------FVTNPYQAIVAARDSLKQREETQK----MQMEIQKLNEEVTDMRRANDEEKLDIQD 333 (721)
Q Consensus 273 ---~-~KEN----~~pD-------~v~NPyqaIv~ARDslkqree~~~----~q~e~~~l~~e~~~~k~~n~~er~~iq~ 333 (721)
+ .+|- ++|+ +...----|..-|--+|-||++.| |-..|.+||+.|..++-+| +|
T Consensus 173 r~e~~~~e~~~v~e~~~~~~pispid~e~qe~~kleRkrlrnreaa~Kcr~rkLdrisrLEdkv~~lk~~n-------~~ 245 (279)
T KOG0837|consen 173 RKELEKDEPQTVAEIPELKEPISPIDMEDQEKIKLERKRLRNREAASKCRKRKLDRISRLEDKVKTLKIYN-------RD 245 (279)
T ss_pred hHHHhhccchhhccCcccCCCCCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhhhhhhhhh-------hh
Confidence 1 1111 2221 222222335556777888998864 4456889999999888776 78
Q ss_pred HHHHHHHHHHHHHH
Q 047330 334 LELELIKRRRRAEK 347 (721)
Q Consensus 334 le~~likrrrr~ek 347 (721)
|+.+|.++++-+..
T Consensus 246 L~~~l~~l~~~v~e 259 (279)
T KOG0837|consen 246 LASELSKLKEQVAE 259 (279)
T ss_pred HHHHHHHHHHHHHH
Confidence 99999998876543
No 31
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=38.60 E-value=7.2e+02 Score=29.24 Aligned_cols=13 Identities=8% Similarity=0.296 Sum_probs=6.2
Q ss_pred ccchhhhHHhhhc
Q 047330 171 GISVNQFLSVFAS 183 (721)
Q Consensus 171 g~SvnQFls~fas 183 (721)
.+|...+..+|.+
T Consensus 116 ~~~~~~~~~~l~~ 128 (1164)
T TIGR02169 116 RVRLSEIHDFLAA 128 (1164)
T ss_pred cccHHHHHHHHHH
Confidence 3444455555543
No 32
>PF05275 CopB: Copper resistance protein B precursor (CopB); InterPro: IPR007939 This family consists of several bacterial copper resistance proteins. Copper is essential and serves as a cofactor for more than 30 enzymes yet a surplus of copper is toxic and leads to free radical formation and oxidation of biomolecules. Therefore, copper homeostasis is a key requisite for every organism. CopB serves to extrude copper when it approaches toxic levels [] and has been shown to act as an ATPase (3.6.1.3 from EC).; GO: 0005507 copper ion binding, 0006878 cellular copper ion homeostasis, 0009279 cell outer membrane
Probab=38.21 E-value=20 Score=36.49 Aligned_cols=48 Identities=25% Similarity=0.661 Sum_probs=28.1
Q ss_pred CCCCCceeecceeee--------cCCCCccc----ccchhhhhHhhhcccCCCCcccccccccccccchh
Q 047330 118 DSASPLAWEIDHWFP--------CSRGGLTV----PSNLRILQWQVCKRKHNKPEFVVPWWDLQLGISVN 175 (721)
Q Consensus 118 d~~SpLgWEIDHIfP--------~SRGG~Tv----~sNLQiLQWqvNr~KsNKle~lvpWwdLqlg~Svn 175 (721)
+....+.||...|+= .|.|.... -..+++|=|+ .+.||||+|.|+-.+
T Consensus 19 ~~~~~~~wd~~~w~G~D~nrl~lksEGe~~~~~~e~~e~q~lysr----------~is~fwd~q~GvR~d 78 (210)
T PF05275_consen 19 DGGDGFAWDAQAWYGGDYNRLWLKSEGERSEGEIEEAEIQALYSR----------AISPFWDVQAGVRYD 78 (210)
T ss_pred CCCCceEEEEEEEEEcCcCEEEEEEccccccCCcchheeeeeccc----------ccCccceEEEEeEee
Confidence 344457777776654 33343322 2234444443 478999999998543
No 33
>PF04568 IATP: Mitochondrial ATPase inhibitor, IATP; InterPro: IPR007648 ATP synthase inhibitor prevents the enzyme from switching to ATP hydrolysis during collapse of the electrochemical gradient, for example during oxygen deprivation [] ATP synthase inhibitor forms a one to one complex with the F1 ATPase, possibly by binding at the alpha-beta interface. It is thought to inhibit ATP synthesis by preventing the release of ATP []. The minimum inhibitory region for bovine inhibitor (P01096 from SWISSPROT) is from residues 39 to 72 []. The inhibitor has two oligomeric states, dimer (the active state) and tetramer. At low pH , the inhibitor forms a dimer via antiparallel coiled coil interactions between the C-terminal regions of two monomers. At high pH, the inhibitor forms tetramers and higher oligomers by coiled coil interactions involving the N terminus and inhibitory region, thus preventing the inhibitory activity []. ; GO: 0004857 enzyme inhibitor activity, 0045980 negative regulation of nucleotide metabolic process, 0005739 mitochondrion; PDB: 1GMJ_B 1OHH_H 1HF9_B 2V7Q_J.
Probab=38.00 E-value=71 Score=29.61 Aligned_cols=51 Identities=25% Similarity=0.351 Sum_probs=34.8
Q ss_pred HHHHHhhhhHHhHHHHHHHHHHHHHhHHHHHHHHhcccc----ccchHHHHHHHH
Q 047330 288 QAIVAARDSLKQREETQKMQMEIQKLNEEVTDMRRANDE----EKLDIQDLELEL 338 (721)
Q Consensus 288 qaIv~ARDslkqree~~~~q~e~~~l~~e~~~~k~~n~~----er~~iq~le~~l 338 (721)
-+|..|-|++..||.|.+-+-=.+.=.+.+..||.+-++ -+-.|.+||..|
T Consensus 45 Gsir~ag~~f~krE~A~E~~Y~r~~EkEqL~~Lk~kl~~e~~~~~k~i~~le~~I 99 (100)
T PF04568_consen 45 GSIRAAGGAFGKREAAQEEQYFRKKEKEQLKKLKEKLKEEIEHHRKEIDELEKHI 99 (100)
T ss_dssp CHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchhhhCCccchHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 578889999999999986443333333455566666655 566777777665
No 34
>cd07598 BAR_FAM92 The Bin/Amphiphysin/Rvs (BAR) domain of Family with sequence similarity 92 (FAM92). BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions including organelle biogenesis, membrane trafficking or remodeling, and cell division and migration. This group is composed of proteins from the family with sequence similarity 92 (FAM92), which were originally identified by the presence of the unknown domain DUF1208. This domain shows similarity to the BAR domains of sorting nexins. Mammals contain at least two member types, FAM92A and FAM92B, which may exist in many variants. The Xenopus homolog of FAM92A1, xVAP019, is essential for embryo survival and cell differentiation. FAM92A1 may be involved in regulating cell proliferation and apoptosis. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=37.93 E-value=4.5e+02 Score=26.73 Aligned_cols=75 Identities=25% Similarity=0.314 Sum_probs=49.9
Q ss_pred HHHhhhhHH----hHHHHHHHHHHHHHhHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHHHHHHHh---------h
Q 047330 290 IVAARDSLK----QREETQKMQMEIQKLNEEVTDMRRANDEEKLDIQDLELELIKRRRRAEKCRQLAEAQ---------S 356 (721)
Q Consensus 290 Iv~ARDslk----qree~~~~q~e~~~l~~e~~~~k~~n~~er~~iq~le~~likrrrr~ekcrrlaeaq---------s 356 (721)
|-.+||.+| .|....+++ ..+..|+++|.-++..|-+.|..|.+-+..+++|.+.-+=+ .
T Consensus 99 ~k~~k~~~K~~~~ar~~~~~~~-------~~leklk~~~~~d~~~i~eaE~~l~~a~~d~~r~s~~l~ee~~rFe~~k~~ 171 (211)
T cd07598 99 CKHARDDLKNTFTARNKELKQL-------KQLEKLRQKNPSDRQIISQAESELQKASVDANRSTKELEEQMDNFEKQKIR 171 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456788887 333333333 45556678888889999899999999999998887654322 1
Q ss_pred hHHHHHHHHHHHhhh
Q 047330 357 SYRTMLEKMIRDAMH 371 (721)
Q Consensus 357 syr~~lekmirdamh 371 (721)
-.+.+|...|.-.|+
T Consensus 172 d~K~~l~~fv~~~m~ 186 (211)
T cd07598 172 DIKTIFSDFVLIEML 186 (211)
T ss_pred HHHHHHHHHHHHHHH
Confidence 245555555555554
No 35
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=35.91 E-value=3.7e+02 Score=31.20 Aligned_cols=89 Identities=20% Similarity=0.250 Sum_probs=41.9
Q ss_pred HhHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHHH-----------HHHHhhhHHHHHHHHHHHhhhhchhhHHHH
Q 047330 312 KLNEEVTDMRRANDEEKLDIQDLELELIKRRRRAEKCRQ-----------LAEAQSSYRTMLEKMIRDAMHQSVIYKEQV 380 (721)
Q Consensus 312 ~l~~e~~~~k~~n~~er~~iq~le~~likrrrr~ekcrr-----------laeaqssyr~~lekmirdamhqsv~ykeq~ 380 (721)
.+-.|+.++++.+..-.-+-+-+|..|.++--++.||-. |-+-|...+.-|++|++.-=-+-..|-||+
T Consensus 358 ~~~~e~~~l~~~~~~~e~~kk~~e~k~~q~q~k~~k~~kel~~~~E~n~~l~knq~vw~~kl~~~~e~~~~~~~s~d~~I 437 (493)
T KOG0804|consen 358 LLITEADSLKQESSDLEAEKKIVERKLQQLQTKLKKCQKELKEEREENKKLIKNQDVWRGKLKELEEREKEALGSKDEKI 437 (493)
T ss_pred HHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444443333444455555555555555532 333445555555555543333333333333
Q ss_pred hhhHHHHHHHHHHHHHHHHh
Q 047330 381 RLNQVATNALMARLEAQKAI 400 (721)
Q Consensus 381 rlnqaa~~almarleaq~a~ 400 (721)
-==|--..-||.-||+|.-+
T Consensus 438 ~dLqEQlrDlmf~le~qqkl 457 (493)
T KOG0804|consen 438 TDLQEQLRDLMFFLEAQQKL 457 (493)
T ss_pred HHHHHHHHhHheehhhhhhh
Confidence 22222234677777777665
No 36
>PF06098 Radial_spoke_3: Radial spoke protein 3; InterPro: IPR009290 This family consists of several radial spoke protein 3 (RSP3) sequences. Eukaryotic cilia and flagella present in diverse types of cells perform motile, sensory, and developmental functions in organisms from protists to humans. They are centred by precisely organised, microtubule-based structures, the axonemes. The axoneme consists of two central singlet microtubules, called the central pair, and nine outer doublet microtubules. These structures are well conserved during evolution. The outer doublet microtubules, each composed of A and B sub-fibres, are connected to each other by nexin links, while the central pair is held at the centre of the axoneme by radial spokes. The radial spokes are T-shaped structures extending from the A-tubule of each outer doublet microtubule to the centre of the axoneme. Radial spoke protein 3 (RSP3), is present at the proximal end of the spoke stalk and helps in anchoring the radial spoke to the outer doublet. It is thought that radial spokes regulate the activity of inner arm dynein through protein phosphorylation and dephosphorylation [].
Probab=34.86 E-value=3.1e+02 Score=29.53 Aligned_cols=98 Identities=20% Similarity=0.310 Sum_probs=56.5
Q ss_pred CCCCccc-ccccccCCCCcc--cCCCCCC--CCChHHHHHHhhhhHHhHHHHHHHHHHHHHhHHHHHHHHhccccccchH
Q 047330 257 IRSSSPA-IASRKVKPGVLK--ENETPDF--VTNPYQAIVAARDSLKQREETQKMQMEIQKLNEEVTDMRRANDEEKLDI 331 (721)
Q Consensus 257 ~r~~~~~-iaarK~~~~~~K--EN~~pD~--v~NPyqaIv~ARDslkqree~~~~q~e~~~l~~e~~~~k~~n~~er~~i 331 (721)
-||+.|+ |+++.-.-.+|. +.+=.|| ---|.+-....+ .|.|=--.-.-+.||+.|...-....+.-..|....
T Consensus 98 drPptP~fvP~ktG~D~~TQI~~gdLFDFd~EV~PiLeVLVgK-tlEQAl~EV~EEeEL~~lr~~q~~fe~~R~aEl~e~ 176 (291)
T PF06098_consen 98 DRPPTPLFVPAKTGIDVETQIEEGDLFDFDEEVKPILEVLVGK-TLEQALMEVMEEEELAALRRQQRAFEELRNAELAEV 176 (291)
T ss_pred cCCCCCCCCCCCCCCCcceeeccccccchHhhhhhHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3677765 665544333332 2222332 233776554332 333221112234456666666666666667788899
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhh
Q 047330 332 QDLELELIKRRRRAEKCRQLAEAQSS 357 (721)
Q Consensus 332 q~le~~likrrrr~ekcrrlaeaqss 357 (721)
|.||+. -+|+..||-||+.+..-.
T Consensus 177 qrlE~~--e~r~~eEkerR~~q~~~~ 200 (291)
T PF06098_consen 177 QRLEEA--EKRRREEKERRIKQQKER 200 (291)
T ss_pred HHHHHH--HHHHHHHHHHHHHHHHHH
Confidence 999987 778899999999875443
No 37
>PF09325 Vps5: Vps5 C terminal like; InterPro: IPR015404 Vps5 is a sorting nexin that functions in membrane trafficking. This is the C-terminal dimerisation domain [].
Probab=34.81 E-value=4.3e+02 Score=25.50 Aligned_cols=74 Identities=28% Similarity=0.262 Sum_probs=53.8
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHHH-HhhhhchhhHHHHhhhHHHHHHHHHHHHHHHHhhhhhHHHHHHhhcchHHH
Q 047330 344 RAEKCRQLAEAQSSYRTMLEKMIR-DAMHQSVIYKEQVRLNQVATNALMARLEAQKAICDSAEKDLHKKFKQREEI 418 (721)
Q Consensus 344 r~ekcrrlaeaqssyr~~lekmir-damhqsv~ykeq~rlnqaa~~almarleaq~a~cd~se~~l~kky~~rd~l 418 (721)
-..-++.+|++.......++.+.. +.++-...-.|-+++=.|+-.+|..|-.++.. +..++.+|.+|=.+.+.|
T Consensus 80 l~~~l~~l~~~~~~~~~~~~~~a~~~~~~l~~~L~ey~~~~~svk~~l~~R~~~~~~-~~~a~~~l~kkk~~~~kl 154 (236)
T PF09325_consen 80 LSEALSQLAEAFEKISELLEEQANQEEETLGEPLREYLRYIESVKEALNRRDKKLIE-YQNAEKELQKKKAQLEKL 154 (236)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhcc
Confidence 345567777777777777776654 34555666788889999999999999999954 567888999884444433
No 38
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=33.99 E-value=83 Score=33.62 Aligned_cols=62 Identities=18% Similarity=0.340 Sum_probs=41.2
Q ss_pred HhhhhHHhHHHH-HHHHHHHHHhHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHHHHHH
Q 047330 292 AARDSLKQREET-QKMQMEIQKLNEEVTDMRRANDEEKLDIQDLELELIKRRRRAEKCRQLAE 353 (721)
Q Consensus 292 ~ARDslkqree~-~~~q~e~~~l~~e~~~~k~~n~~er~~iq~le~~likrrrr~ekcrrlae 353 (721)
.+|..|+.-... ..++.++.+++.++.+++..-++-..-+++++..+..-.+..++||-|..
T Consensus 208 ~lk~~l~~~~~ei~~~~~~l~e~~~~l~~l~~~I~~~~~~k~e~~~~I~~ae~~~~~~r~~t~ 270 (312)
T smart00787 208 RAKEKLKKLLQEIMIKVKKLEELEEELQELESKIEDLTNKKSELNTEIAEAEKKLEQCRGFTF 270 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCH
Confidence 344444443332 35666777777777777777777777777777777777777777777643
No 39
>PF15294 Leu_zip: Leucine zipper
Probab=33.88 E-value=2.7e+02 Score=30.03 Aligned_cols=16 Identities=50% Similarity=0.638 Sum_probs=12.0
Q ss_pred hhhhHHHHHHhhcchH
Q 047330 401 CDSAEKDLHKKFKQRE 416 (721)
Q Consensus 401 cd~se~~l~kky~~rd 416 (721)
-..+|++|-+||++.-
T Consensus 238 L~~aekeLekKfqqT~ 253 (278)
T PF15294_consen 238 LSLAEKELEKKFQQTA 253 (278)
T ss_pred hhcchhhHHHHhCccH
Confidence 3567888888888754
No 40
>PF07716 bZIP_2: Basic region leucine zipper; InterPro: IPR011700 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotes are proteins that contain a basic region mediating sequence-specific DNA-binding, followed by a leucine zipper region (see IPR002158 from INTERPRO), which is required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1NWQ_A 1H89_B 1H88_A 1GTW_B 2E43_A 1IO4_A 1GU4_B 2E42_A 1H8A_B 1GU5_B ....
Probab=32.17 E-value=1e+02 Score=24.71 Aligned_cols=30 Identities=23% Similarity=0.458 Sum_probs=13.5
Q ss_pred HHHHHHHhHHHHHHHHhccccccchHHHHH
Q 047330 306 MQMEIQKLNEEVTDMRRANDEEKLDIQDLE 335 (721)
Q Consensus 306 ~q~e~~~l~~e~~~~k~~n~~er~~iq~le 335 (721)
+...+..|+.+|..|...|..=+-.|..|+
T Consensus 23 kk~~~~~le~~~~~L~~en~~L~~~i~~L~ 52 (54)
T PF07716_consen 23 KKQREEELEQEVQELEEENEQLRQEIAQLE 52 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 334444444444444444444333444444
No 41
>PRK04863 mukB cell division protein MukB; Provisional
Probab=31.69 E-value=9.4e+02 Score=31.27 Aligned_cols=31 Identities=19% Similarity=0.206 Sum_probs=18.4
Q ss_pred CchHHHHHhhhcCCcccCCCCCcchhhhHHH
Q 047330 594 RTDDIIKKLDEKYPQKDRSSVTQEPEKQQIV 624 (721)
Q Consensus 594 ~~ddii~kln~kfp~~e~~~~~~e~~~q~~i 624 (721)
+.++.+++|..-++..-..+..=-.-||+.+
T Consensus 607 ~a~~al~~L~eq~g~~~~~~~~v~~~mq~~~ 637 (1486)
T PRK04863 607 AAQDALARLREQSGEEFEDSQDVTEYMQQLL 637 (1486)
T ss_pred hhHHHHHHHHHhcchhhcCHHHHHHHHHHHH
Confidence 5667888888888855444322224555554
No 42
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=31.40 E-value=2e+02 Score=27.18 Aligned_cols=16 Identities=44% Similarity=0.675 Sum_probs=11.7
Q ss_pred HHHHHHhhhHHHHHHH
Q 047330 349 RQLAEAQSSYRTMLEK 364 (721)
Q Consensus 349 rrlaeaqssyr~~lek 364 (721)
..+++-+.-|-++|+-
T Consensus 75 ~el~~l~~ry~t~Lel 90 (120)
T PF12325_consen 75 QELEELQQRYQTLLEL 90 (120)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4567778888888863
No 43
>PF06409 NPIP: Nuclear pore complex interacting protein (NPIP); InterPro: IPR009443 This family consists of a series of primate specific nuclear pore complex interacting protein (NPIP) sequences. The function of this family is unknown but is well conserved from African apes to humans [].
Probab=30.42 E-value=2e+02 Score=30.81 Aligned_cols=59 Identities=29% Similarity=0.327 Sum_probs=46.6
Q ss_pred HHHHHHHHH--HhHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Q 047330 303 TQKMQMEIQ--KLNEEVTDMRRANDEEKLDIQDLELELIKRRRRAEKCRQLAEAQSSYRTM 361 (721)
Q Consensus 303 ~~~~q~e~~--~l~~e~~~~k~~n~~er~~iq~le~~likrrrr~ekcrrlaeaqssyr~~ 361 (721)
..|.+|||. +....||-.-.-|-+-+.+-+.|-..--|-.-++||-|+|.||.-+-+..
T Consensus 93 eakvraei~~mkVt~kvn~h~kI~g~rKtA~~~~rKl~~ke~E~~EKErqlSeAeEn~kl~ 153 (265)
T PF06409_consen 93 EAKVRAEIRKMKVTTKVNSHYKINGKRKTAKKHLRKLSMKECEHAEKERQLSEAEENGKLA 153 (265)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHhhHHHhhHHHHHHHHHHHHHHHHHHhhhhhhhhccchH
Confidence 357788888 44455888877788888888888888888889999999999998765443
No 44
>PRK10361 DNA recombination protein RmuC; Provisional
Probab=29.49 E-value=9.3e+02 Score=27.82 Aligned_cols=88 Identities=19% Similarity=0.328 Sum_probs=57.8
Q ss_pred HHHHHHhHHHHHHHHhccccccchHHHHHHHHHHHHHH-HHHHHHHHHHhhhHHHHHHHHHHHhhhh-chhhHHHHhhhH
Q 047330 307 QMEIQKLNEEVTDMRRANDEEKLDIQDLELELIKRRRR-AEKCRQLAEAQSSYRTMLEKMIRDAMHQ-SVIYKEQVRLNQ 384 (721)
Q Consensus 307 q~e~~~l~~e~~~~k~~n~~er~~iq~le~~likrrrr-~ekcrrlaeaqssyr~~lekmirdamhq-sv~ykeq~rlnq 384 (721)
..++..+++++..+.+.+.+-......|+..|...|+. .||.+.|.+++.-.+.-.+-+--++.-+ |--+.| .||
T Consensus 59 ~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~le~~~~~~~ek~~~l~~~~~~L~~~F~~LA~~ile~k~~~f~~---~~~ 135 (475)
T PRK10361 59 RAECELLNNEVRSLQSINTSLEADLREVTTRMEAAQQHADDKIRQMINSEQRLSEQFENLANRIFEHSNRRVDE---QNR 135 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHH
Confidence 34556667777777777777777777888888775554 4666778888888777777766655533 333443 366
Q ss_pred HHHHHHHHHHHHH
Q 047330 385 VATNALMARLEAQ 397 (721)
Q Consensus 385 aa~~almarleaq 397 (721)
..-.+|+.=|.-|
T Consensus 136 ~~l~~ll~Pl~e~ 148 (475)
T PRK10361 136 QSLNSLLSPLREQ 148 (475)
T ss_pred HHHHHHHhhHHHH
Confidence 6666666655544
No 45
>PF14505 DUF4438: Domain of unknown function (DUF4438); PDB: 3N99_N 3DCL_A.
Probab=29.31 E-value=32 Score=36.54 Aligned_cols=29 Identities=31% Similarity=0.414 Sum_probs=18.0
Q ss_pred ccccCCCCEEee---------ccCCCCCceeecceeee
Q 047330 104 IRVDPYGNVLYY---------HADSASPLAWEIDHWFP 132 (721)
Q Consensus 104 wR~DAyGNVV~~---------had~~SpLgWEIDHIfP 132 (721)
||+|..|+.-.+ ..-..|+++|.-|||=|
T Consensus 2 yrv~~dG~p~ilP~~GGItyNv~vGD~a~g~agDHvEP 39 (258)
T PF14505_consen 2 YRVDHDGTPFILPGTGGITYNVRVGDSAFGWAGDHVEP 39 (258)
T ss_dssp EEE-TTSBEEE---EESEESS--TTSBSSS-BSSS---
T ss_pred ceeCCCCCEEeccccCcEEEeeeeCCccccccccccCC
Confidence 889999987664 22667889999999988
No 46
>PRK11091 aerobic respiration control sensor protein ArcB; Provisional
Probab=28.71 E-value=2.8e+02 Score=31.38 Aligned_cols=79 Identities=20% Similarity=0.316 Sum_probs=48.5
Q ss_pred HHHHHHHHHHhHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhhchhhH-H---
Q 047330 303 TQKMQMEIQKLNEEVTDMRRANDEEKLDIQDLELELIKRRRRAEKCRQLAEAQSSYRTMLEKMIRDAMHQSVIYK-E--- 378 (721)
Q Consensus 303 ~~~~q~e~~~l~~e~~~~k~~n~~er~~iq~le~~likrrrr~ekcrrlaeaqssyr~~lekmirdamhqsv~yk-e--- 378 (721)
....+.++++|..++.+.++..++-.....+|+..+..+++. .+.|.+.+.-|+++|+. |.-.|+.. .
T Consensus 105 ~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~L~~~i~~r~~~---~~~l~~~~~~l~~il~~-----~~~~i~~~D~~g~ 176 (779)
T PRK11091 105 NVQLKDNIAQLNQEIAEREKAEEARQEAFEQLKNEIKEREET---QIELEQQSSLLRSFLDA-----SPDLVYYRNEDGE 176 (779)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHhc-----CcceEEEECCCCc
Confidence 345677788888888887776666666677888777666543 24555666667776654 33333221 1
Q ss_pred HHhhhHHHHHH
Q 047330 379 QVRLNQVATNA 389 (721)
Q Consensus 379 q~rlnqaa~~a 389 (721)
=+-.|+||+.-
T Consensus 177 i~~~N~a~~~l 187 (779)
T PRK11091 177 FSGCNRAMELL 187 (779)
T ss_pred EEeEcHHHHHH
Confidence 13467777643
No 47
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=28.54 E-value=1.3e+03 Score=29.42 Aligned_cols=113 Identities=24% Similarity=0.341 Sum_probs=67.8
Q ss_pred HHHHHHHHhHHHHHHHHhccccccchHHHHHHH----------------------HHHHHHHHHHHH-HHHHHhhhHHHH
Q 047330 305 KMQMEIQKLNEEVTDMRRANDEEKLDIQDLELE----------------------LIKRRRRAEKCR-QLAEAQSSYRTM 361 (721)
Q Consensus 305 ~~q~e~~~l~~e~~~~k~~n~~er~~iq~le~~----------------------likrrrr~ekcr-rlaeaqssyr~~ 361 (721)
..|.|+..|+.++..++..+.+=+.-=|+|++. +.+.+..++.|. ++-+.+-.|+.|
T Consensus 688 ~~q~el~~le~eL~~le~~~~kf~~l~~ql~l~~~~l~l~~~r~~~~e~~~~~~~~~~~~e~v~e~~~~Ike~~~~~k~~ 767 (1174)
T KOG0933|consen 688 AIQKELEALERELKSLEAQSQKFRDLKQQLELKLHELALLEKRLEQNEFHKLLDDLKELLEEVEESEQQIKEKERALKKC 767 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567788888888877777776666666666543 233344455554 455566667664
Q ss_pred ------HHHHHHHhhhhchhhHHHHhhhHH--HHHHHHHHHHHHHHhhhhhHHHHHHhhcchHHHHHhh
Q 047330 362 ------LEKMIRDAMHQSVIYKEQVRLNQV--ATNALMARLEAQKAICDSAEKDLHKKFKQREEIEKQL 422 (721)
Q Consensus 362 ------lekmirdamhqsv~ykeq~rlnqa--a~~almarleaq~a~cd~se~~l~kky~~rd~le~qi 422 (721)
||+|+.|+=| |+| -|||-+ --..+-+|++++...|...|.+..+---.-++|++.+
T Consensus 768 ~~~i~~lE~~~~d~~~----~re-~rlkdl~keik~~k~~~e~~~~~~ek~~~e~e~l~lE~e~l~~e~ 831 (1174)
T KOG0933|consen 768 EDKISTLEKKMKDAKA----NRE-RRLKDLEKEIKTAKQRAEESSKELEKRENEYERLQLEHEELEKEI 831 (1174)
T ss_pred HHHHHHHHHHHhHhhh----hhH-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5666666544 444 355533 2345667888888888777766655444444454443
No 48
>PF12297 EVC2_like: Ellis van Creveld protein 2 like protein; InterPro: IPR022076 This family of proteins is found in eukaryotes. Proteins in this family are typically between 571 and 1310 amino acids in length. There are two conserved sequence motifs: LPA and ELH. EVC2 is implicated in Ellis van Creveld chondrodysplastic dwarfism in humans. Mutations in this protein can give rise to this congenital condition. LIMBIN is a protein which shares around 80% sequence homology with EVC2 and it is implicated in a similar condition in bovine chondrodysplastic dwarfism.
Probab=28.37 E-value=9.6e+02 Score=27.62 Aligned_cols=214 Identities=21% Similarity=0.291 Sum_probs=110.8
Q ss_pred ccccccccc-cccccccCCC--chhhhhhhhhcCccccceeeccccccc-----------c-ccccccccccCCCCCCcc
Q 047330 198 LEGENEEIN-ASQTVESHSF--PQHFVESKRKLGLAPAGIVVSRRELRD-----------S-ALTLRSLDYNRQIRSSSP 262 (721)
Q Consensus 198 ~eGe~eel~-~~q~veshsf--PqHf~e~k~kvgLApaaiv~Srr~~~d-----------~-~~~l~sld~nr~~r~~~~ 262 (721)
+||=+|++. .-|+||--+| |++..---+.+- |+++.|--.| . ++.|++|..+..+-|.-.
T Consensus 119 ~d~v~Ed~~~~Dq~idiL~~Edp~~m~qaLe~le-----i~tl~rad~~LEa~R~qi~kdii~~lL~~L~~~g~ls~~~e 193 (429)
T PF12297_consen 119 ADGVSEDAAMNDQMIDILSSEDPGSMLQALEDLE-----IATLNRADADLEACRIQISKDIISLLLKNLSSRGHLSPQVE 193 (429)
T ss_pred hhhhhhhhhcccchhhhhhhcChHHHHHHHHhhh-----HHHHHhccCcHHHHHHHHHHHHHHHHHHhcccCCCCChHHH
Confidence 456566632 2377777777 776654444443 3333333111 0 344666666655533332
Q ss_pred cccccccCCCCcc-cCCCCCCCCChHH---HHHHhhhhHHhHHHHH-HHHHHHHHhHHHHHHHHhccccccchHHHHHHH
Q 047330 263 AIASRKVKPGVLK-ENETPDFVTNPYQ---AIVAARDSLKQREETQ-KMQMEIQKLNEEVTDMRRANDEEKLDIQDLELE 337 (721)
Q Consensus 263 ~iaarK~~~~~~K-EN~~pD~v~NPyq---aIv~ARDslkqree~~-~~q~e~~~l~~e~~~~k~~n~~er~~iq~le~~ 337 (721)
-.-+.+|+...+. |++ +.--|+ +-..|+=.|..|++.. ..|.|.+++++--.-+|+-++++.+-.-+|=..
T Consensus 194 ~rl~~~~kkq~l~le~~----l~eEy~rkm~aL~~~c~lE~r~k~e~~~qre~a~~~eaeel~k~~~e~~a~e~~~LL~~ 269 (429)
T PF12297_consen 194 KRLSSVFKKQFLGLEKR----LQEEYDRKMVALTAECNLETRKKMEAQHQREMAEMEEAEELLKHASERSAAECSSLLRK 269 (429)
T ss_pred HHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhCccHhhHHHHHHHHHH
Confidence 2223333322210 110 111232 2234555565555543 334444444444445666777777666554333
Q ss_pred HHHHHHHHHHHHH-----HHHHhhhHHHHHHHHHHHhhhhchhhHHHHhhhHHHHHHHHHHHHHHHHhhhhhHHHHHHhh
Q 047330 338 LIKRRRRAEKCRQ-----LAEAQSSYRTMLEKMIRDAMHQSVIYKEQVRLNQVATNALMARLEAQKAICDSAEKDLHKKF 412 (721)
Q Consensus 338 likrrrr~ekcrr-----laeaqssyr~~lekmirdamhqsv~ykeq~rlnqaa~~almarleaq~a~cd~se~~l~kky 412 (721)
| |+...|.-|+ -.|+..-++.-|.--=|..||- |+-+|+ -..+.|..|+. +++..-|+..+
T Consensus 270 l--H~leqe~L~~~L~l~qEE~~aKa~Rqla~~~R~eLh~--if~~qi-----~~ai~~GeL~~-----e~Ak~Ll~~y~ 335 (429)
T PF12297_consen 270 L--HGLEQEHLRRSLLLQQEEDFAKARRQLAVFRRVELHE--IFFEQI-----KSAIFKGELKP-----EAAKSLLQDYS 335 (429)
T ss_pred H--HhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHH-----HHHHHhCCCCH-----HHHHHHHHHHH
Confidence 3 2222333322 2345555555555556788884 344444 23445666654 45566678888
Q ss_pred cchHHHHHhhchhHHhhhhhcccC
Q 047330 413 KQREEIEKQLRPEREHARKRSRMD 436 (721)
Q Consensus 413 ~~rd~le~qi~Pe~eq~RKRsR~D 436 (721)
+.-+++|... -+.||+|||.+-
T Consensus 336 ~~Q~~vEelM--D~~qA~kRy~L~ 357 (429)
T PF12297_consen 336 KIQENVEELM--DFFQANKRYHLS 357 (429)
T ss_pred HHHHHHHHHH--HHHHHhhHhhHH
Confidence 8889999987 468999999874
No 49
>TIGR02895 spore_sigI RNA polymerase sigma-I factor. Members of this sigma factor protein family are strictly limited to endospore-forming species in the Firmicutes lineage of bacteria, but are not universally present among such species. Sigma-I was shown to be induced by heat shock (PubMed:11157964) in Bacillus subtilis and is suggested by its phylogenetic profile to be connected to the program of sporulation (PubMed:16311624).
Probab=26.85 E-value=1.6e+02 Score=29.99 Aligned_cols=73 Identities=16% Similarity=0.233 Sum_probs=57.0
Q ss_pred HHHHhhhhHHhHHHHHHHHHHHHHhHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Q 047330 289 AIVAARDSLKQREETQKMQMEIQKLNEEVTDMRRANDEEKLDIQDLELELIKRRRRAEKCRQLAEAQSSYRTMLEKMIRD 368 (721)
Q Consensus 289 aIv~ARDslkqree~~~~q~e~~~l~~e~~~~k~~n~~er~~iq~le~~likrrrr~ekcrrlaeaqssyr~~lekmird 368 (721)
-+..|.+.+.+..+......||+.+..++.+ =.+++.||-..==|||...+.|..+|.+-++-..++++|++.
T Consensus 102 ~~~~~~~~~~~~~~~~~~~eEI~~~~~~L~~-------~gi~~~dLv~~sPkh~d~r~~~i~ia~~~~~~~~l~~~l~~k 174 (218)
T TIGR02895 102 EFNKSMEEYRNEIENENRRLEILEYKKLLKQ-------FGIEFVELVKVSPKHRDTRKKAIKIAKVIVENEELLEYLIRK 174 (218)
T ss_pred HHHHHHHHHHHHHccccHHHHHHHHHHHHHH-------cCCcHHHHhhcCCCCHHHHHHHHHHHHHHhcCHHHHHHHHHh
Confidence 4455566666655555556677766666554 468999999999999999999999999999999999998874
No 50
>smart00338 BRLZ basic region leucin zipper.
Probab=26.83 E-value=1.9e+02 Score=23.58 Aligned_cols=47 Identities=17% Similarity=0.410 Sum_probs=36.0
Q ss_pred HhhhhHHhHHHHHHHHHHHHHhHHHHHHHHhccccccchHHHHHHHH
Q 047330 292 AARDSLKQREETQKMQMEIQKLNEEVTDMRRANDEEKLDIQDLELEL 338 (721)
Q Consensus 292 ~ARDslkqree~~~~q~e~~~l~~e~~~~k~~n~~er~~iq~le~~l 338 (721)
+.+--.|.+......+.++..|+.+..+|+.+...-+..|+.|...|
T Consensus 17 A~~~R~rKk~~~~~Le~~~~~L~~en~~L~~~~~~l~~e~~~lk~~~ 63 (65)
T smart00338 17 ARRSRERKKAEIEELERKVEQLEAENERLKKEIERLRRELEKLKSEL 63 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33334555666778899999999999999988888888888877665
No 51
>PRK10884 SH3 domain-containing protein; Provisional
Probab=26.20 E-value=4.4e+02 Score=26.87 Aligned_cols=42 Identities=10% Similarity=0.301 Sum_probs=25.2
Q ss_pred CCCChHHHHHHhhhhHHhHHHHHHHHHHHHHhHHHHHHHHhcccccc
Q 047330 282 FVTNPYQAIVAARDSLKQREETQKMQMEIQKLNEEVTDMRRANDEEK 328 (721)
Q Consensus 282 ~v~NPyqaIv~ARDslkqree~~~~q~e~~~l~~e~~~~k~~n~~er 328 (721)
+|...|.+-.. ++ |+.-.+.|+|+++|.++++++.+..+...
T Consensus 79 WV~~~~Ls~~p---~~--~~rlp~le~el~~l~~~l~~~~~~~~~~~ 120 (206)
T PRK10884 79 WIPLKQLSTTP---SL--RTRVPDLENQVKTLTDKLNNIDNTWNQRT 120 (206)
T ss_pred eEEHHHhcCCc---cH--HHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 66666654211 22 23335677888888888888776655443
No 52
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=25.94 E-value=2.4e+02 Score=32.47 Aligned_cols=64 Identities=11% Similarity=0.230 Sum_probs=39.4
Q ss_pred CCCChHHHHHHhhhhHHhHHHHHHHHHHHHHhHHHHHHHHhccccccchHHHHHHHHHHHHHHH
Q 047330 282 FVTNPYQAIVAARDSLKQREETQKMQMEIQKLNEEVTDMRRANDEEKLDIQDLELELIKRRRRA 345 (721)
Q Consensus 282 ~v~NPyqaIv~ARDslkqree~~~~q~e~~~l~~e~~~~k~~n~~er~~iq~le~~likrrrr~ 345 (721)
.|++.+-.-|--...-.|-+.+.+.+++|+.|..|+..|.+++.+..-.|.+||.++..-+.++
T Consensus 57 vV~~~FddkVnqSALteqQ~kasELEKqLaaLrqElq~~saq~~dle~KIkeLEaE~~~Lk~Ql 120 (475)
T PRK13729 57 VVDTTFDDKVRQHATTEMQVTAAQMQKQYEEIRRELDVLNKQRGDDQRRIEKLGQDNAALAEQV 120 (475)
T ss_pred eecchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 4555555444333333333455677888888887777777777766666677777766555443
No 53
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=25.74 E-value=6e+02 Score=29.07 Aligned_cols=25 Identities=24% Similarity=0.163 Sum_probs=14.4
Q ss_pred hHHHHHHhhcCCCcH----HHHHHHHHhh
Q 047330 553 EEEEEIRKERGKGNV----ERWLQMLLEN 577 (721)
Q Consensus 553 eEdeE~r~~rGKGNV----ekWLqmLlEn 577 (721)
+..++.-..-|=++| -+||..|--.
T Consensus 295 ~~g~~~~~~~~~~~~~~~~~~~l~~l~~r 323 (514)
T TIGR03319 295 EEGEQAAFDLGVHGLHPELIKLLGRLKFR 323 (514)
T ss_pred HHHHHHHHHhCCCcCCHHHHHHHHHhhcc
Confidence 334444445566666 7777776533
No 54
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=25.62 E-value=1.6e+02 Score=25.44 Aligned_cols=28 Identities=18% Similarity=0.525 Sum_probs=12.8
Q ss_pred hHHhHHHHHHHHHHHHHhHHHHHHHHhc
Q 047330 296 SLKQREETQKMQMEIQKLNEEVTDMRRA 323 (721)
Q Consensus 296 slkqree~~~~q~e~~~l~~e~~~~k~~ 323 (721)
-++++.--++..+.+.+++.++.+++.+
T Consensus 28 el~~~~~IKKLr~~~~e~e~~~~~l~~~ 55 (74)
T PF12329_consen 28 ELKLNNTIKKLRAKIKELEKQIKELKKK 55 (74)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444433
No 55
>cd07653 F-BAR_CIP4-like The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Cdc42-Interacting Protein 4 and similar proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. This subfamily is composed of Cdc42-Interacting Protein 4 (CIP4), Formin Binding Protein 17 (FBP17), FormiN Binding Protein 1-Like (FNBP1L), and similar proteins. CIP4 and FNBP1L are Cdc42 effectors that bind Wiskott-Aldrich syndrome protein (WASP) and function in endocytosis. CIP4 and FBP17 bind to the Fas ligand and may be implicated in the inflammatory response. CIP4 may also play a role in phagocytosis. Members of this subfamily typically contain an N-terminal F-BAR domain and a C-terminal SH3 domain. In addition, some members such as FNBP1L contain a central Cdc42-binding HR1 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged l
Probab=25.50 E-value=6.1e+02 Score=25.11 Aligned_cols=77 Identities=21% Similarity=0.260 Sum_probs=39.6
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHhcccccc----chHHHHH----------HHHHHHHHHHHHHHH-HHHHhhhHHHHHHH
Q 047330 300 REETQKMQMEIQKLNEEVTDMRRANDEEK----LDIQDLE----------LELIKRRRRAEKCRQ-LAEAQSSYRTMLEK 364 (721)
Q Consensus 300 ree~~~~q~e~~~l~~e~~~~k~~n~~er----~~iq~le----------~~likrrrr~ekcrr-laeaqssyr~~lek 364 (721)
.+...+.|.+++.+-.++...|.+=+..- .+-+.++ ..|.|.+.++.|+.. .-+|...|..+|..
T Consensus 111 ~~~~~kl~~~~~~~~~~l~kskk~Y~~~~ke~~~a~~k~~~~~~~~~~s~~~~eK~~~k~~k~~~~~~~a~~~Y~~~l~~ 190 (251)
T cd07653 111 LSEGSKLQQKLESSIKQLEKSKKAYEKAFKEAEKAKQKYEKADADMNLTKADVEKAKANANLKTQAAEEAKNEYAAQLQK 190 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445666666666666655554432211 0111111 234566666666544 33677888888777
Q ss_pred HHHHhhhhchhhHHH
Q 047330 365 MIRDAMHQSVIYKEQ 379 (721)
Q Consensus 365 mirdamhqsv~ykeq 379 (721)
. --||...|.+.
T Consensus 191 ~---N~~~~~~y~~~ 202 (251)
T cd07653 191 F---NKEQRQHYSTD 202 (251)
T ss_pred H---HHHHHHHHHhh
Confidence 6 23445555443
No 56
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=25.27 E-value=8.3e+02 Score=29.23 Aligned_cols=57 Identities=14% Similarity=0.247 Sum_probs=25.2
Q ss_pred HHHHHHHhccccccchHHHHHHHHHHHHHHH----HHHHHHHHHhhhHHHHHHHHHHHhhh
Q 047330 315 EEVTDMRRANDEEKLDIQDLELELIKRRRRA----EKCRQLAEAQSSYRTMLEKMIRDAMH 371 (721)
Q Consensus 315 ~e~~~~k~~n~~er~~iq~le~~likrrrr~----ekcrrlaeaqssyr~~lekmirdamh 371 (721)
.-|+-|+++-+...-.|++|+..+.+-+.++ ||..+.-+.|.....-+++|++..+.
T Consensus 565 ~rv~~Lk~~~e~Ql~~L~~l~e~~~~l~~~ae~LaeR~e~a~d~Qe~L~~R~~~vl~~l~~ 625 (717)
T PF10168_consen 565 RRVKLLKQQKEQQLKELQELQEERKSLRESAEKLAERYEEAKDKQEKLMKRVDRVLQLLNS 625 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3333344433333334444444443333333 34444444455555555555555544
No 57
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=25.23 E-value=99 Score=26.34 Aligned_cols=34 Identities=12% Similarity=0.432 Sum_probs=30.6
Q ss_pred HHHHHHHHhHHHHHHHHhccccccchHHHHHHHH
Q 047330 305 KMQMEIQKLNEEVTDMRRANDEEKLDIQDLELEL 338 (721)
Q Consensus 305 ~~q~e~~~l~~e~~~~k~~n~~er~~iq~le~~l 338 (721)
+.+.++.+++-.++.++..|++=+-+|++|+...
T Consensus 4 elEn~~~~~~~~i~tvk~en~~i~~~ve~i~env 37 (55)
T PF05377_consen 4 ELENELPRIESSINTVKKENEEISESVEKIEENV 37 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5678899999999999999999999999998876
No 58
>PF04201 TPD52: Tumour protein D52 family; InterPro: IPR007327 The hD52 gene was originally identified through its elevated expression level in human breast carcinoma. Cloning of D52 homologues from other species has indicated that D52 may play roles in calcium-mediated signal transduction and cell proliferation. Two human homologues of hD52, hD53 and hD54, have also been identified, demonstrating the existence of a novel gene/protein family []. These proteins have an N-terminal coiled-coil that allows members to form homo- and heterodimers with each other [].
Probab=25.07 E-value=1.8e+02 Score=29.31 Aligned_cols=22 Identities=32% Similarity=0.670 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHhHHHHHHHHh
Q 047330 301 EETQKMQMEIQKLNEEVTDMRR 322 (721)
Q Consensus 301 ee~~~~q~e~~~l~~e~~~~k~ 322 (721)
+|..+++.||+++|+|+..|+|
T Consensus 29 eE~eeLr~EL~KvEeEI~TLrq 50 (162)
T PF04201_consen 29 EEREELRSELAKVEEEIQTLRQ 50 (162)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 6667899999999999999887
No 59
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=25.07 E-value=3e+02 Score=26.22 Aligned_cols=34 Identities=21% Similarity=0.373 Sum_probs=14.7
Q ss_pred hHHHHHHHHhccccccchHHHHHHHHHHHHHHHH
Q 047330 313 LNEEVTDMRRANDEEKLDIQDLELELIKRRRRAE 346 (721)
Q Consensus 313 l~~e~~~~k~~n~~er~~iq~le~~likrrrr~e 346 (721)
|.+.++.|+++|+.---.|-+|++.+.--++-++
T Consensus 42 L~~~l~~L~~q~~s~~qr~~eLqaki~ea~~~le 75 (107)
T PF09304_consen 42 LRNALQSLQAQNASRNQRIAELQAKIDEARRNLE 75 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444433344444444444443333
No 60
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=25.06 E-value=24 Score=40.53 Aligned_cols=77 Identities=21% Similarity=0.429 Sum_probs=0.0
Q ss_pred HHHHHHhHHHHHHHHhcccccc---chHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH-------------HHHhh
Q 047330 307 QMEIQKLNEEVTDMRRANDEEK---LDIQDLELELIKRRRRAEKCRQLAEAQSSYRTMLEKM-------------IRDAM 370 (721)
Q Consensus 307 q~e~~~l~~e~~~~k~~n~~er---~~iq~le~~likrrrr~ekcrrlaeaqssyr~~lekm-------------irdam 370 (721)
..++..++.++.+|+++|++=. -.++.|--.|---|-+++|+.++...=..||.-|+-| ....|
T Consensus 266 ~~~~e~le~ei~~L~q~~~eL~~~A~~a~~LrDElD~lR~~a~r~~klE~~ve~YKkKLed~~~lk~qvk~Lee~N~~l~ 345 (713)
T PF05622_consen 266 KIELEELEKEIDELRQENEELQAEAREARALRDELDELREKADRADKLENEVEKYKKKLEDLEDLKRQVKELEEDNAVLL 345 (713)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455677777778888776533 2456777788888999999999999999999877754 23445
Q ss_pred hhchhhHHHHhhh
Q 047330 371 HQSVIYKEQVRLN 383 (721)
Q Consensus 371 hqsv~ykeq~rln 383 (721)
.+.+.+-||++-.
T Consensus 346 e~~~~LEeel~~~ 358 (713)
T PF05622_consen 346 ETKAMLEEELKKA 358 (713)
T ss_dssp -------------
T ss_pred HHHHHHHHHHHHh
Confidence 6666666666543
No 61
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=24.77 E-value=1.5e+03 Score=29.02 Aligned_cols=51 Identities=20% Similarity=0.334 Sum_probs=43.2
Q ss_pred hhhhHHhHHHHHHHHHHHHHhHHHHHHHHhccccccchHHHHHHHHHHHHH
Q 047330 293 ARDSLKQREETQKMQMEIQKLNEEVTDMRRANDEEKLDIQDLELELIKRRR 343 (721)
Q Consensus 293 ARDslkqree~~~~q~e~~~l~~e~~~~k~~n~~er~~iq~le~~likrrr 343 (721)
-|+...+.++-+++|..+.+|.+++.+...++++.|..+-+.|+.+-..+.
T Consensus 280 ~~ql~~~~~~i~~~qek~~~l~~ki~~~~~k~~~~r~k~teiea~i~~~~~ 330 (1074)
T KOG0250|consen 280 ERQLNNQEEEIKKKQEKVDTLQEKIEEKQGKIEEARQKLTEIEAKIGELKD 330 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHH
Confidence 367778899999999999999999999999999999888888877765544
No 62
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=24.56 E-value=96 Score=33.73 Aligned_cols=41 Identities=20% Similarity=0.502 Sum_probs=34.9
Q ss_pred HHHHHhHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHH
Q 047330 308 MEIQKLNEEVTDMRRANDEEKLDIQDLELELIKRRRRAEKC 348 (721)
Q Consensus 308 ~e~~~l~~e~~~~k~~n~~er~~iq~le~~likrrrr~ekc 348 (721)
..|++||-.+..||..+-.--+-|.-||+.|-|-|+++|--
T Consensus 18 qKIqelE~QldkLkKE~qQrQfQleSlEAaLqKQKqK~e~e 58 (307)
T PF10481_consen 18 QKIQELEQQLDKLKKERQQRQFQLESLEAALQKQKQKVEEE 58 (307)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 45888888888888888888889999999999999998754
No 63
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=24.17 E-value=1.5e+03 Score=30.58 Aligned_cols=120 Identities=18% Similarity=0.168 Sum_probs=55.5
Q ss_pred CCCCCccccCCCChh-hhHHHHhhhhhcCCCCCCCC-CCCChHHHHHHHHHhhcccCCCCCCCCcccccCCCCEEeeccC
Q 047330 41 HGPPFCFTPYPLQED-ESSRAKQLEKMFPVIDPKAK-PTAKPKIFLSLLWKQLNHLGNAGFDPAVIRVDPYGNVLYYHAD 118 (721)
Q Consensus 41 ~GPP~~F~Py~~q~~-e~~~~kdld~mFPv~~~~~~-~~~nPr~F~~~~W~qldhlgnaG~DParwR~DAyGNVV~~had 118 (721)
.|-++.|+-|.+.-. -+-+.+-..++|.+++.+.- |.+.-..|++.+..+. + |.||.- .+.-+++- -.|+.
T Consensus 497 EgIew~fidfG~Dlq~~idLIEkp~Gi~slLdEEc~~PkAtd~tf~~kL~~~~--~---gk~~~f-~~~k~~~~-~~~F~ 569 (1930)
T KOG0161|consen 497 EGIEWDFIDFGLDLQPTIDLIEKPMGILSLLDEECVVPKATDKTFLEKLCDQH--L---GKHPKF-QKPKGKKA-EAHFA 569 (1930)
T ss_pred hCCceeeeccccchhhhHHHHhchhhHHHHHHHHHhcCCCccchHHHHHHHHh--h---ccCccc-cCcccccc-hhhhh
Confidence 588888988864321 11122222256665554422 4456667888776654 2 333332 22111111 12222
Q ss_pred CCCCceeecceeeecCCCCcccccchhhhhHhhhcccCCCCccccccccccccc
Q 047330 119 SASPLAWEIDHWFPCSRGGLTVPSNLRILQWQVCKRKHNKPEFVVPWWDLQLGI 172 (721)
Q Consensus 119 ~~SpLgWEIDHIfP~SRGG~Tv~sNLQiLQWqvNr~KsNKle~lvpWwdLqlg~ 172 (721)
-.. ++|.|||.++.=.-=-.+|.|=-++.- .+.+..++++--|.=+.|.
T Consensus 570 l~H-yaG~V~Y~~~~WL~Knkdpln~~v~~l----l~~s~~~~v~~l~~~~~~~ 618 (1930)
T KOG0161|consen 570 LVH-YAGTVDYNVDGWLEKNKDPLNDNVVSL----LKQSTNKLVSSLFQDYAGA 618 (1930)
T ss_pred eee-ecceeccCccchhhcCCCCchHHHHHH----HHhcccHHHHHHhhhhhcc
Confidence 222 455566665522222233555555432 2333366677666554443
No 64
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=24.11 E-value=2.5e+02 Score=22.92 Aligned_cols=49 Identities=18% Similarity=0.349 Sum_probs=36.6
Q ss_pred HHHhhhhHHhHHHHHHHHHHHHHhHHHHHHHHhccccccchHHHHHHHH
Q 047330 290 IVAARDSLKQREETQKMQMEIQKLNEEVTDMRRANDEEKLDIQDLELEL 338 (721)
Q Consensus 290 Iv~ARDslkqree~~~~q~e~~~l~~e~~~~k~~n~~er~~iq~le~~l 338 (721)
+++.+--.|.......++.++..|+.+...|+..+..=+-.++.|...+
T Consensus 15 ~AAr~~R~RKk~~~~~Le~~~~~L~~en~~L~~~~~~L~~~~~~L~~e~ 63 (64)
T PF00170_consen 15 EAARRSRQRKKQYIEELEEKVEELESENEELKKELEQLKKEIQSLKSEN 63 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 3444444566666778899999999999999988887777777776653
No 65
>PRK11637 AmiB activator; Provisional
Probab=23.72 E-value=9.6e+02 Score=26.05 Aligned_cols=11 Identities=18% Similarity=0.377 Sum_probs=4.5
Q ss_pred HHHHHHHHHHH
Q 047330 388 NALMARLEAQK 398 (721)
Q Consensus 388 ~almarleaq~ 398 (721)
..+|..|..++
T Consensus 169 ~~~l~~l~~~~ 179 (428)
T PRK11637 169 QETIAELKQTR 179 (428)
T ss_pred HHHHHHHHHHH
Confidence 34444444333
No 66
>PF06456 Arfaptin: Arfaptin-like domain; InterPro: IPR010504 Arfaptin interacts with ARF1, a small GTPase involved in vesicle budding at the Golgi complex and immature secretory granules. The structure of arfaptin shows that upon binding to a small GTPase, arfaptin forms a an elongated, crescent-shaped dimer of three-helix coiled-coils []. The N-terminal region of ICA69 is similar to arfaptin [].; PDB: 1I4D_B 1I4L_B 1I49_B 1I4T_A 4DCN_D.
Probab=23.56 E-value=6.6e+02 Score=25.88 Aligned_cols=75 Identities=17% Similarity=0.201 Sum_probs=58.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhhchhhHHHHh--hhHHHHHHHHHHHHHHHHhhhhhH
Q 047330 331 IQDLELELIKRRRRAEKCRQLAEAQSSYRTMLEKMIRDAMHQSVIYKEQVR--LNQVATNALMARLEAQKAICDSAE 405 (721)
Q Consensus 331 iq~le~~likrrrr~ekcrrlaeaqssyr~~lekmirdamhqsv~ykeq~r--lnqaa~~almarleaq~a~cd~se 405 (721)
=.+|++.|..-|.-..+|+.|...-..|-.-|-.++..----.-.++++.- -..++..++.+==++|+.++...+
T Consensus 32 D~eL~~kle~l~~~~~~y~~L~~~~~~~~~~l~~l~q~q~~lg~~f~~~~~~e~~~~l~~~f~~~~~~~~~~~~~~~ 108 (229)
T PF06456_consen 32 DDELDAKLELLRDTQRTYRGLLKHARAYQNRLQALSQTQKELGDFFAELGVREKSPALGEEFSANGEAQRSLAKQGE 108 (229)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--H-CCGHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 356888899999999999999888888888888777654444567777777 777788888888899998885543
No 67
>PF07716 bZIP_2: Basic region leucine zipper; InterPro: IPR011700 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotes are proteins that contain a basic region mediating sequence-specific DNA-binding, followed by a leucine zipper region (see IPR002158 from INTERPRO), which is required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1NWQ_A 1H89_B 1H88_A 1GTW_B 2E43_A 1IO4_A 1GU4_B 2E42_A 1H8A_B 1GU5_B ....
Probab=23.05 E-value=1.1e+02 Score=24.41 Aligned_cols=36 Identities=22% Similarity=0.419 Sum_probs=29.4
Q ss_pred HHHhhhhHHhHHHHHHHHHHHHHhHHHHHHHHhccc
Q 047330 290 IVAARDSLKQREETQKMQMEIQKLNEEVTDMRRAND 325 (721)
Q Consensus 290 Iv~ARDslkqree~~~~q~e~~~l~~e~~~~k~~n~ 325 (721)
+++.|--.|.++....++.++..|+.+...|++++.
T Consensus 14 ~AA~r~R~rkk~~~~~le~~~~~L~~en~~L~~~i~ 49 (54)
T PF07716_consen 14 EAARRSRQRKKQREEELEQEVQELEEENEQLRQEIA 49 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666677888888999999999999999988764
No 68
>PF06305 DUF1049: Protein of unknown function (DUF1049); InterPro: IPR010445 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=22.94 E-value=1.6e+02 Score=23.79 Aligned_cols=26 Identities=23% Similarity=0.560 Sum_probs=21.8
Q ss_pred hhHHhHHHHHHHHHHHHHhHHHHHHH
Q 047330 295 DSLKQREETQKMQMEIQKLNEEVTDM 320 (721)
Q Consensus 295 Dslkqree~~~~q~e~~~l~~e~~~~ 320 (721)
..+++|-+.++.+.++.+++.++..+
T Consensus 42 ~~~~~r~~~~~~~k~l~~le~e~~~l 67 (68)
T PF06305_consen 42 SRLRLRRRIRRLRKELKKLEKELEQL 67 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34788888999999999999888765
No 69
>PF03904 DUF334: Domain of unknown function (DUF334); InterPro: IPR005602 This is a family of proteins found in Staphylococcus aureus plasmid with no characterised function.
Probab=22.88 E-value=7.5e+02 Score=26.37 Aligned_cols=81 Identities=20% Similarity=0.235 Sum_probs=49.9
Q ss_pred HHHHHHhccccccchHHHHHHHHHHHHHHHHHHH-HHHHHhhhHHHHHHHHHHHhhhhchhhHHHHhhhHHHHHHHHHHH
Q 047330 316 EVTDMRRANDEEKLDIQDLELELIKRRRRAEKCR-QLAEAQSSYRTMLEKMIRDAMHQSVIYKEQVRLNQVATNALMARL 394 (721)
Q Consensus 316 e~~~~k~~n~~er~~iq~le~~likrrrr~ekcr-rlaeaqssyr~~lekmirdamhqsv~ykeq~rlnqaa~~almarl 394 (721)
|..+|+.+|+===--|.+++..+-.|-++-++.+ -|++|++.|+.- -+.-|..++=.=|-+|++.++..+=+
T Consensus 44 e~~eLk~qnkli~K~l~ei~~~qd~reK~~~~I~ssL~eTtkdf~~~-----~~k~~~dF~~~Lq~~Lk~V~tde~k~-- 116 (230)
T PF03904_consen 44 EIQELKRQNKLIIKYLSEIEEKQDIREKNLKEIKSSLEETTKDFIDK-----TEKVHNDFQDILQDELKDVDTDELKN-- 116 (230)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHhhchHHHHH--
Confidence 4666666664111122333444444444444333 689999999875 56778888888889999999987643
Q ss_pred HHHHHhhhh
Q 047330 395 EAQKAICDS 403 (721)
Q Consensus 395 eaq~a~cd~ 403 (721)
.+|+.+-+.
T Consensus 117 ~~~~ei~k~ 125 (230)
T PF03904_consen 117 IAQNEIKKV 125 (230)
T ss_pred HHHHHHHHH
Confidence 355555333
No 70
>PRK11578 macrolide transporter subunit MacA; Provisional
Probab=22.69 E-value=9e+02 Score=25.38 Aligned_cols=21 Identities=29% Similarity=0.276 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 047330 333 DLELELIKRRRRAEKCRQLAE 353 (721)
Q Consensus 333 ~le~~likrrrr~ekcrrlae 353 (721)
..++.|..-++..+..++|.+
T Consensus 117 ~a~~~l~~a~~~~~r~~~L~~ 137 (370)
T PRK11578 117 QAEAELKLARVTLSRQQRLAK 137 (370)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444443
No 71
>PRK11637 AmiB activator; Provisional
Probab=22.66 E-value=1e+03 Score=25.90 Aligned_cols=6 Identities=33% Similarity=0.684 Sum_probs=3.1
Q ss_pred ceeccc
Q 047330 537 RLQFPV 542 (721)
Q Consensus 537 ~~~fpv 542 (721)
.+.+||
T Consensus 306 ~~~~Pv 311 (428)
T PRK11637 306 QAFWPV 311 (428)
T ss_pred CCccCC
Confidence 345555
No 72
>PRK14162 heat shock protein GrpE; Provisional
Probab=22.50 E-value=1.7e+02 Score=29.79 Aligned_cols=44 Identities=20% Similarity=0.282 Sum_probs=20.7
Q ss_pred HHHHHHHhHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHH
Q 047330 306 MQMEIQKLNEEVTDMRRANDEEKLDIQDLELELIKRRRRAEKCR 349 (721)
Q Consensus 306 ~q~e~~~l~~e~~~~k~~n~~er~~iq~le~~likrrrr~ekcr 349 (721)
-+.++..|+.++.+++++.++-+-..+-+-+.+.--|||.+|.+
T Consensus 37 ~~~e~~~l~~~l~~l~~e~~elkd~~lR~~AEfeN~rkR~~kE~ 80 (194)
T PRK14162 37 KQNPVEDLEKEIADLKAKNKDLEDKYLRSQAEIQNMQNRYAKER 80 (194)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444333333444444555555655544
No 73
>PF01544 CorA: CorA-like Mg2+ transporter protein; InterPro: IPR002523 The CorA transport system is the primary Mg2+ influx system of Salmonella typhimurium and Escherichia coli [, ]. CorA is virtually ubiquitous in the Bacteria and Archaea. There are also eukaryotic relatives of this protein. Transporter ZntB mediates efflux of zinc ions [].; GO: 0046873 metal ion transmembrane transporter activity, 0030001 metal ion transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 2HN1_A 3NWI_D 3NVO_B 3CK6_A 2IUB_E 2BBJ_E 2HN2_A 2BBH_A.
Probab=22.47 E-value=7.3e+02 Score=24.16 Aligned_cols=69 Identities=23% Similarity=0.307 Sum_probs=42.9
Q ss_pred CCCChHHHHHHhhhhH--HhHHHHHHHHHHHHHhHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHHHHH
Q 047330 282 FVTNPYQAIVAARDSL--KQREETQKMQMEIQKLNEEVTDMRRANDEEKLDIQDLELELIKRRRRAEKCRQLA 352 (721)
Q Consensus 282 ~v~NPyqaIv~ARDsl--kqree~~~~q~e~~~l~~e~~~~k~~n~~er~~iq~le~~likrrrr~ekcrrla 352 (721)
...+|......-=+.+ ...........++.+|++.+ .+..+.+.--.|.+|+..|.+-|+...-+++..
T Consensus 104 ~~~~~~~ll~~il~~~~~~~~~~l~~l~~~l~~le~~~--~~~~~~~~~~~l~~l~~~l~~l~~~l~~~~~~l 174 (292)
T PF01544_consen 104 RPSSPEDLLYAILDEIVDDYFEVLEELEDELDELEDEL--DDRPSNELLRELFDLRRELSRLRRSLSPLREVL 174 (292)
T ss_dssp SCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--THTTTHHHCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc--ccccchhhHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence 4555654433222222 23444557777888888888 555666666777888888888877666655544
No 74
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=22.41 E-value=1.2e+03 Score=26.64 Aligned_cols=126 Identities=15% Similarity=0.212 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHHHHHHHh------hhHHHHHHHHHHHhhhhc
Q 047330 300 REETQKMQMEIQKLNEEVTDMRRANDEEKLDIQDLELELIKRRRRAEKCRQLAEAQ------SSYRTMLEKMIRDAMHQS 373 (721)
Q Consensus 300 ree~~~~q~e~~~l~~e~~~~k~~n~~er~~iq~le~~likrrrr~ekcrrlaeaq------ssyr~~lekmirdamhqs 373 (721)
.++-.+...++..++++..+++..-..=|-...+....|.+-+.....++|.-+.. .+|..++. .+.+.+.+-
T Consensus 382 ~e~leel~e~leeie~eq~ei~e~l~~Lrk~E~eAr~kL~~~~~~L~~ikr~l~k~~lpgip~~y~~~~~-~~~~~i~~l 460 (569)
T PRK04778 382 QEELEEILKQLEEIEKEQEKLSEMLQGLRKDELEAREKLERYRNKLHEIKRYLEKSNLPGLPEDYLEMFF-EVSDEIEAL 460 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHH-HHHHHHHHH
Q ss_pred hhhHHHHhhhHHHHHHHHHHHHHHHHhhhhhHHHHHHhhcchHHHHHhhchhHHhhhhhcc
Q 047330 374 VIYKEQVRLNQVATNALMARLEAQKAICDSAEKDLHKKFKQREEIEKQLRPEREHARKRSR 434 (721)
Q Consensus 374 v~ykeq~rlnqaa~~almarleaq~a~cd~se~~l~kky~~rd~le~qi~Pe~eq~RKRsR 434 (721)
.---++.++|-.|.+.........-.....--.+|... ..-||..|.= +.|||
T Consensus 461 ~~~L~~g~VNm~ai~~e~~e~~~~~~~L~~q~~dL~~~---a~~lE~~Iqy-----~nRfr 513 (569)
T PRK04778 461 AEELEEKPINMEAVNRLLEEATEDVETLEEETEELVEN---ATLTEQLIQY-----ANRYR 513 (569)
T ss_pred HHHhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHH-----HhccC
No 75
>cd07621 BAR_SNX5_6 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins 5 and 6. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. Members of this subfamily include SNX5, SNX6, the mammalian SNX32, and similar proteins. SNX5 and SNX6 may be components of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi, acting as a mammalian equivalent of yeast Vsp17p. The function of SNX32 is still unknown. BAR domain
Probab=22.11 E-value=9e+02 Score=25.11 Aligned_cols=60 Identities=23% Similarity=0.272 Sum_probs=43.8
Q ss_pred HHHHhhhHHHHHHHHHH-HhhhhchhhHHHHhhhHHHHHHHHHHHHHHHHhhhhhHHHHHHh
Q 047330 351 LAEAQSSYRTMLEKMIR-DAMHQSVIYKEQVRLNQVATNALMARLEAQKAICDSAEKDLHKK 411 (721)
Q Consensus 351 laeaqssyr~~lekmir-damhqsv~ykeq~rlnqaa~~almarleaq~a~cd~se~~l~kk 411 (721)
|||.+-..+.+..++-. |.+.-+...++.+|+=+||-..|..|+-|=..-|+ +++.|.|+
T Consensus 86 lae~~ek~~~l~~r~A~~d~l~L~e~L~~Y~r~~~A~K~~l~rR~ral~~~q~-A~k~L~Ka 146 (219)
T cd07621 86 VAETFEKLRKLEGRVASDEDLKLSDTLRYYMRDTQAAKDLLYRRLRCLANYEN-ANKNLEKA 146 (219)
T ss_pred HHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHh
Confidence 44444444444444443 67777888999999999999999999988777665 57777776
No 76
>PF15346 ARGLU: Arginine and glutamate-rich 1
Probab=21.80 E-value=8.1e+02 Score=24.45 Aligned_cols=44 Identities=34% Similarity=0.506 Sum_probs=37.1
Q ss_pred HHHHHHHHhccccccchHHHHHHHHHHHHHHHHH-HHHHHHHhhh
Q 047330 314 NEEVTDMRRANDEEKLDIQDLELELIKRRRRAEK-CRQLAEAQSS 357 (721)
Q Consensus 314 ~~e~~~~k~~n~~er~~iq~le~~likrrrr~ek-crrlaeaqss 357 (721)
...+.+.+.+-+++|-..++||..|...+|++|- +|++|+.|..
T Consensus 61 ~~~l~e~r~keEeer~~~eELe~ileen~rkvEEAQrk~aeEr~~ 105 (149)
T PF15346_consen 61 EEALEEARRKEEEERKKREELEKILEENRRKVEEAQRKLAEERLR 105 (149)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567889999999999999999999999998865 5778887754
No 77
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=21.58 E-value=9.4e+02 Score=27.88 Aligned_cols=115 Identities=21% Similarity=0.312 Sum_probs=59.6
Q ss_pred HHHHHHHHhHHHHHHHHhccccc-----cc---hHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhhchhh
Q 047330 305 KMQMEIQKLNEEVTDMRRANDEE-----KL---DIQDLELELIKRRRRAEKCRQLAEAQSSYRTMLEKMIRDAMHQSVIY 376 (721)
Q Consensus 305 ~~q~e~~~l~~e~~~~k~~n~~e-----r~---~iq~le~~likrrrr~ekcrrlaeaqssyr~~lekmirdamhqsv~y 376 (721)
+.+.++.+.|.++.+.|++|.-- -+ .+.+|+.+|..-| -++++|++-|..+ ++++.....-..+.
T Consensus 205 ~l~~~l~~aE~~l~~fk~~~~l~~~~~~~~~~~~L~~l~~ql~~a~------~~~~~a~a~~~~l-~~~l~~~~~~~~~~ 277 (754)
T TIGR01005 205 DLSKQSRDAEAEVAAYRAQSDLLMGNNATLATQQLAELNTELSRAR------ANRAAAEGTADSV-KKALQNGGSLDVLP 277 (754)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCcccCCccchHHHHHHHHHHHHHHH------HHHHHHHHHHHHH-HHHHhcCCCccchh
Confidence 45566677777788888876541 11 2334444443332 3456677777653 44444332211211
Q ss_pred HHHHhhhHHHHHHHHHHHHHHHHhhhhhHHHHHHhh-----------cchHHHHHhhchhHHh
Q 047330 377 KEQVRLNQVATNALMARLEAQKAICDSAEKDLHKKF-----------KQREEIEKQLRPEREH 428 (721)
Q Consensus 377 keq~rlnqaa~~almarleaq~a~cd~se~~l~kky-----------~~rd~le~qi~Pe~eq 428 (721)
. +-.++..-+.+++.|..|.+--.....+|..+| .|.++|+.+|.-+..+
T Consensus 278 ~--~~~~~~~~~~~i~~L~~~l~~l~~~~~~l~~~y~~~hP~v~~l~~qi~~l~~~i~~e~~~ 338 (754)
T TIGR01005 278 E--VLSSQLKLEDLIQRLRERQAELRATIADLSTTMLANHPRVVAAKSSLADLDAQIRSELQK 338 (754)
T ss_pred h--hhcCcccccHHHHHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1 111222223566666666665555555666666 3456677776655444
No 78
>COG5283 Phage-related tail protein [Function unknown]
Probab=21.32 E-value=7.4e+02 Score=31.76 Aligned_cols=116 Identities=15% Similarity=0.243 Sum_probs=70.8
Q ss_pred hHHhHHHHHHHHHHHHHhHHHHHHHHhccc-------cccchHHHHHHHHHHHHH-------HHHHH-HHHHHHhhhHHH
Q 047330 296 SLKQREETQKMQMEIQKLNEEVTDMRRAND-------EEKLDIQDLELELIKRRR-------RAEKC-RQLAEAQSSYRT 360 (721)
Q Consensus 296 slkqree~~~~q~e~~~l~~e~~~~k~~n~-------~er~~iq~le~~likrrr-------r~ekc-rrlaeaqssyr~ 360 (721)
-..-|+..++--++++..|.-+.-|.-+-. -.+-.||.|...|.--=| -.|+. -++-+|++-|..
T Consensus 87 t~a~~kay~e~~~q~tqae~~~~sas~q~~~a~~q~~~~~~~iq~~~~~is~t~k~maaQ~~l~eqt~n~~g~a~~~~~g 166 (1213)
T COG5283 87 TQASKKAYQEYNAQYTQAENKLRSLSGQFGVASEQLMLQQKEIQRLQYAISTLNKSMAAQARLLEQTGNKFGTADAKVVG 166 (1213)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhHHHHHHHhhhh
Confidence 334455566677777777777664433332 112245666655543222 22222 245567777777
Q ss_pred HHH--HHHHHhhhhc-------------hhhHHHHhhhHHHHHHHHHHHHHHHHhhhhhHHHHHHhh
Q 047330 361 MLE--KMIRDAMHQS-------------VIYKEQVRLNQVATNALMARLEAQKAICDSAEKDLHKKF 412 (721)
Q Consensus 361 ~le--kmirdamhqs-------------v~ykeq~rlnqaa~~almarleaq~a~cd~se~~l~kky 412 (721)
..| -|++.+|.-- +..+-|.++||+.+..| +||..+++---.++-.|-|.+
T Consensus 167 l~esf~~q~~aln~q~~~t~k~~~~~~~~l~e~qq~~~q~~~a~~-~~L~~s~~q~~~s~~qlsk~~ 232 (1213)
T COG5283 167 LRESFGRQTEALNKQLERTKKVADALTYVLDEAQQKLSQALSARL-ERLQESRTQMSQSSGQLGKRL 232 (1213)
T ss_pred HhHHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHHH-HHHHHHHHHHHHhhhhhcccc
Confidence 666 3455555522 24568999999988665 999999998888888887554
No 79
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=21.04 E-value=1.5e+02 Score=27.15 Aligned_cols=31 Identities=16% Similarity=0.288 Sum_probs=17.3
Q ss_pred HHHHHHHHHhHHHHHHHHhccccccchHHHH
Q 047330 304 QKMQMEIQKLNEEVTDMRRANDEEKLDIQDL 334 (721)
Q Consensus 304 ~~~q~e~~~l~~e~~~~k~~n~~er~~iq~l 334 (721)
.++++++..++.++.+++++|+.=+--|..|
T Consensus 30 ~~l~~q~~~~~~e~~~l~~~n~~L~~eI~~L 60 (105)
T PRK00888 30 WRVNDQVAAQQQTNAKLKARNDQLFAEIDDL 60 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3555666666666666666665433333333
No 80
>PTZ00121 MAEBL; Provisional
Probab=20.56 E-value=1.4e+03 Score=30.71 Aligned_cols=12 Identities=25% Similarity=0.451 Sum_probs=6.9
Q ss_pred HHHhhhHHHHHH
Q 047330 378 EQVRLNQVATNA 389 (721)
Q Consensus 378 eq~rlnqaa~~a 389 (721)
|++||-++|.-+
T Consensus 1258 Eear~a~~A~r~ 1269 (2084)
T PTZ00121 1258 EEARMAHFARRQ 1269 (2084)
T ss_pred HHHHHHHHHHHh
Confidence 556666655544
No 81
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=20.29 E-value=4.9e+02 Score=24.77 Aligned_cols=66 Identities=23% Similarity=0.389 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHH----HHHHHHhhhHHHHHHHH
Q 047330 300 REETQKMQMEIQKLNEEVTDMRRANDEEKLDIQDLELELIKRRRRAEKC----RQLAEAQSSYRTMLEKM 365 (721)
Q Consensus 300 ree~~~~q~e~~~l~~e~~~~k~~n~~er~~iq~le~~likrrrr~ekc----rrlaeaqssyr~~lekm 365 (721)
++.-+..+.++..++....++...-.+=+-.+++++......+..++.+ +++.+...+-+.++++|
T Consensus 122 ~~~~~~~~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~ 191 (191)
T PF04156_consen 122 RELLKSVEERLDSLDESIKELEKEIRELQKELQDSREEVQELRSQLERLQENLQQLEEKIQELQELLEQL 191 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Done!