Query 047330
Match_columns 721
No_of_seqs 71 out of 73
Neff 2.2
Searched_HMMs 29240
Date Mon Mar 25 17:39:33 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047330.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/047330hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2qgp_A HNH endonuclease; Q39X4 97.9 1.4E-06 4.7E-11 76.3 0.4 55 124-189 49-103 (112)
2 3na7_A HP0958; flagellar bioge 83.9 13 0.00043 36.0 12.4 93 307-422 31-127 (256)
3 3oja_B Anopheles plasmodium-re 82.7 6 0.0002 40.9 10.1 112 304-418 452-563 (597)
4 1ik9_A DNA repair protein XRCC 79.8 7.9 0.00027 37.7 9.3 74 283-358 116-206 (213)
5 3hnw_A Uncharacterized protein 78.5 6.5 0.00022 36.0 7.8 69 288-356 62-131 (138)
6 3na7_A HP0958; flagellar bioge 77.5 53 0.0018 31.7 16.7 126 301-426 32-177 (256)
7 1gmj_A ATPase inhibitor; coile 60.1 20 0.00067 31.4 6.3 70 279-348 4-77 (84)
8 2jb0_B Colicin E7; hydrolase/i 57.3 4.1 0.00014 37.9 1.8 60 78-148 45-120 (131)
9 3mq7_A Bone marrow stromal ant 56.8 36 0.0012 31.5 7.8 49 289-346 54-102 (121)
10 3he5_A Synzip1; heterodimeric 53.5 15 0.00052 29.0 4.1 42 305-346 7-48 (49)
11 2wt7_A Proto-oncogene protein 53.4 22 0.00077 28.4 5.3 39 304-342 19-57 (63)
12 1ci6_A Transcription factor AT 52.3 16 0.00055 29.4 4.3 37 304-340 19-55 (63)
13 1fr2_B Colicin E9; protein-pro 51.8 5.1 0.00017 37.4 1.5 60 78-148 48-123 (134)
14 3vkg_A Dynein heavy chain, cyt 42.4 96 0.0033 40.6 10.9 84 290-373 2016-2111(3245)
15 3oja_B Anopheles plasmodium-re 41.1 50 0.0017 34.1 7.0 38 310-347 518-555 (597)
16 2dgc_A Protein (GCN4); basic d 40.2 31 0.0011 27.9 4.2 39 300-338 22-60 (63)
17 7cei_B Protein (colicin E7 imm 36.9 13 0.00044 36.9 1.7 63 75-148 117-195 (206)
18 2efl_A Formin-binding protein 36.2 1.8E+02 0.0063 27.2 9.4 13 352-364 189-201 (305)
19 3ni0_A Bone marrow stromal ant 35.9 54 0.0019 29.5 5.4 36 288-323 46-82 (99)
20 1ci6_A Transcription factor AT 35.3 80 0.0027 25.3 5.9 50 290-339 12-61 (63)
21 1i84_S Smooth muscle myosin he 35.2 67 0.0023 37.3 7.5 51 41-91 507-562 (1184)
22 1i84_S Smooth muscle myosin he 34.1 1.1E+02 0.0036 35.7 8.8 35 308-342 857-891 (1184)
23 1jnm_A Proto-oncogene C-JUN; B 34.0 69 0.0023 25.3 5.2 36 305-340 19-54 (62)
24 2dfs_A Myosin-5A; myosin-V, in 33.8 1.8E+02 0.0061 34.1 10.7 51 41-91 480-531 (1080)
25 3dcl_A TM1086; SAD, structural 33.3 15 0.00053 37.8 1.7 29 104-132 28-65 (284)
26 1t2k_D Cyclic-AMP-dependent tr 33.0 60 0.002 25.5 4.7 38 305-342 19-56 (61)
27 1loi_A Cyclic 3',5'-AMP specif 32.6 9.9 0.00034 26.9 0.1 9 159-167 13-21 (26)
28 1i4d_A Arfaptin 2, partner of 32.3 2.9E+02 0.01 27.3 10.4 85 332-427 7-91 (224)
29 2fxo_A Myosin heavy chain, car 31.6 2.5E+02 0.0086 24.8 9.1 30 307-336 12-41 (129)
30 1dh3_A Transcription factor CR 29.7 64 0.0022 25.4 4.4 30 305-334 19-48 (55)
31 2p22_C Protein SRN2; endosome, 28.5 3.7E+02 0.013 25.8 10.2 45 388-433 127-174 (192)
32 3haj_A Human pacsin2 F-BAR; pa 26.3 2E+02 0.0069 30.0 8.7 29 337-365 186-215 (486)
33 1s94_A S-syntaxin; three helix 26.2 3.7E+02 0.013 24.3 9.7 107 301-415 43-156 (180)
34 2v66_B Nuclear distribution pr 25.1 3.8E+02 0.013 24.2 9.2 73 292-364 17-92 (111)
35 3mq9_A Bone marrow stromal ant 23.3 1.3E+02 0.0044 30.5 6.4 18 139-156 198-215 (471)
36 2pih_A Protein YMCA; regulate 22.0 4.5E+02 0.015 23.8 10.6 78 284-363 23-103 (151)
37 3nvo_A Zinc transport protein 20.6 5E+02 0.017 24.1 9.3 45 304-351 165-209 (264)
38 4fla_A Regulation of nuclear P 20.2 3.8E+02 0.013 24.9 8.3 17 295-311 62-78 (152)
No 1
>2qgp_A HNH endonuclease; Q39X46, GMR87, X-RAY, NESG, structural genomics, PSI-2, protein structure initiative; 2.60A {Geobacter metallireducens gs-15}
Probab=97.94 E-value=1.4e-06 Score=76.27 Aligned_cols=55 Identities=22% Similarity=0.300 Sum_probs=39.2
Q ss_pred eeecceeeecCCCCcccccchhhhhHhhhcccCCCCcccccccccccccchhhhHHhhhcCCcccc
Q 047330 124 AWEIDHWFPCSRGGLTVPSNLRILQWQVCKRKHNKPEFVVPWWDLQLGISVNQFLSVFASSNSDFR 189 (721)
Q Consensus 124 gWEIDHIfP~SRGG~Tv~sNLQiLQWqvNr~KsNKle~lvpWwdLqlg~SvnQFls~fas~n~dFR 189 (721)
.+++|||+|+|+||.+.++||++|+..+|..|+|++.. .-..|+..|...|..+|
T Consensus 49 ~~~vDHIiP~s~gG~~~~~Nl~~lC~~CN~~K~~~~~~-----------e~~~~l~~l~~r~~~~~ 103 (112)
T 2qgp_A 49 ELTMDHLVPVVRGGKSTRGNVVPACKECNNRKKYLLPV-----------EWEEYLDSLESEKEKAR 103 (112)
T ss_dssp GEEEEESSCTTTTCCCSTTTEEEEEHHHHHHHHTCCSH-----------HHHHHHHTC--------
T ss_pred CcEEEEEeehhcCCCCChhhChhhCHHHHHHHccCCHH-----------HHHHHHHHHhcCCcccc
Confidence 59999999999999999999999999999999999621 12345555555555544
No 2
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=83.91 E-value=13 Score=36.03 Aligned_cols=93 Identities=10% Similarity=0.159 Sum_probs=54.0
Q ss_pred HHHHHHhHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhhchhhHHHHhhhHHH
Q 047330 307 QMEIQKLNEEVTDMRRANDEEKLDIQDLELELIKRRRRAEKCRQLAEAQSSYRTMLEKMIRDAMHQSVIYKEQVRLNQVA 386 (721)
Q Consensus 307 q~e~~~l~~e~~~~k~~n~~er~~iq~le~~likrrrr~ekcrrlaeaqssyr~~lekmirdamhqsv~ykeq~rlnqaa 386 (721)
.+++..|++++..++..-..-+..|.+++..+.+.. ..|.++-..---|++| |+++.
T Consensus 31 p~el~~le~~~~~l~~~~~~~~~~l~d~~~~~~~~e---------------------~~i~~~~~ri~~~~~~--l~~v~ 87 (256)
T 3na7_A 31 RKDLDKALNDKEAKNKAILNLEEEKLALKLQVSKNE---------------------QTLQDTNAKIASIQKK--MSEIK 87 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHHH--HHHCS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHHH--HHccC
Confidence 455555555555555555555555555544444333 3333333333334433 23333
Q ss_pred ----HHHHHHHHHHHHHhhhhhHHHHHHhhcchHHHHHhh
Q 047330 387 ----TNALMARLEAQKAICDSAEKDLHKKFKQREEIEKQL 422 (721)
Q Consensus 387 ----~~almarleaq~a~cd~se~~l~kky~~rd~le~qi 422 (721)
-+||+..++.++.--...|+++..-....+.++..+
T Consensus 88 ~~kE~~aL~kEie~~~~~i~~lE~eile~~e~ie~~~~~l 127 (256)
T 3na7_A 88 SERELRSLNIEEDIAKERSNQANREIENLQNEIKRKSEKQ 127 (256)
T ss_dssp SSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 358888888888888888888888777777776654
No 3
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=82.67 E-value=6 Score=40.94 Aligned_cols=112 Identities=16% Similarity=0.199 Sum_probs=53.8
Q ss_pred HHHHHHHHHhHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhhchhhHHHHhhh
Q 047330 304 QKMQMEIQKLNEEVTDMRRANDEEKLDIQDLELELIKRRRRAEKCRQLAEAQSSYRTMLEKMIRDAMHQSVIYKEQVRLN 383 (721)
Q Consensus 304 ~~~q~e~~~l~~e~~~~k~~n~~er~~iq~le~~likrrrr~ekcrrlaeaqssyr~~lekmirdamhqsv~ykeq~rln 383 (721)
.++++++..++.+++.++.+......+++.++..+.++|...+ ...+....-+.+|++++....-.--....+..--
T Consensus 452 e~l~~e~~~~~~~i~~l~~~~~~~~~~l~~~~~~i~~~~~~~~---~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 528 (597)
T 3oja_B 452 EQLEAEVNELRAEVQQLTNEQIQQEQLLQGLHAEIDTNLRRYR---LPKDGLARSSDNLNKVFTHLKERQAFKLRETQAR 528 (597)
T ss_dssp --CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT---CCCCSSSCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcC---ccccccCCHHHHHHHHHHHHHhhhhhhHHHHHHH
Confidence 3567788888888888887776666666666666665553322 0000111222455555543322111111112222
Q ss_pred HHHHHHHHHHHHHHHHhhhhhHHHHHHhhcchHHH
Q 047330 384 QVATNALMARLEAQKAICDSAEKDLHKKFKQREEI 418 (721)
Q Consensus 384 qaa~~almarleaq~a~cd~se~~l~kky~~rd~l 418 (721)
+.+.++.|+-++..+.-++.-|+.+....++..+|
T Consensus 529 ~~~~~~~~~~~~~~~~~~~~le~~~~~~~~~~~~l 563 (597)
T 3oja_B 529 RTEADAKQKETEDLEQENIALEKQLDNKRAKQAEL 563 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhhhhhcchhhHHhhhHHHHHHHhhhhhHHHHH
Confidence 33344455555544444445555554444444433
No 4
>1ik9_A DNA repair protein XRCC4; DNA END joining, double-strand break repair, V(D)J recombination, protein-protein complex, coiled coil; HET: DNA; 2.30A {Homo sapiens} SCOP: b.59.1.1 h.1.11.1 PDB: 3ii6_A* 1fu1_A* 3rwr_A*
Probab=79.82 E-value=7.9 Score=37.71 Aligned_cols=74 Identities=23% Similarity=0.277 Sum_probs=48.6
Q ss_pred CCChHHHH-------HHhhhhHHhHHHHHHHHHHHHHhHHHHHHHHhccccccchHHHHHHHHHH----------HHHHH
Q 047330 283 VTNPYQAI-------VAARDSLKQREETQKMQMEIQKLNEEVTDMRRANDEEKLDIQDLELELIK----------RRRRA 345 (721)
Q Consensus 283 v~NPyqaI-------v~ARDslkqree~~~~q~e~~~l~~e~~~~k~~n~~er~~iq~le~~lik----------rrrr~ 345 (721)
++||+++| +.|-+++.++-.. .+++...|+.+.+.|+.+.|+=--+-.++|..|.+ .|=|-
T Consensus 116 ~~d~~e~i~elfd~~~~~~~~~~~~~~~--L~~e~~~l~~~~~~l~~qlE~~v~~K~~~E~~L~~KF~~lLNeKK~KIR~ 193 (213)
T 1ik9_A 116 VENPAEVIRELIAYALDTIAENQAKNEH--LQKENERLLRDWNDVQGRFEKAVSAKEALETDLYKRFILVLNEKKTKIRS 193 (213)
T ss_dssp CSCHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCChHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 57899886 4555555544433 36677888888888888877766677777777653 33333
Q ss_pred HHHHHHHHHhhhH
Q 047330 346 EKCRQLAEAQSSY 358 (721)
Q Consensus 346 ekcrrlaeaqssy 358 (721)
-+.|=+++||.+-
T Consensus 194 lq~~Ll~~~~~~~ 206 (213)
T 1ik9_A 194 LHNKLLNAAQERE 206 (213)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhh
Confidence 3335677787753
No 5
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=78.49 E-value=6.5 Score=36.04 Aligned_cols=69 Identities=12% Similarity=0.270 Sum_probs=57.5
Q ss_pred HHHHHhhhhHHhHHHHHHHHHHHHHhHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHH-HHHHHHhh
Q 047330 288 QAIVAARDSLKQREETQKMQMEIQKLNEEVTDMRRANDEEKLDIQDLELELIKRRRRAEKC-RQLAEAQS 356 (721)
Q Consensus 288 qaIv~ARDslkqree~~~~q~e~~~l~~e~~~~k~~n~~er~~iq~le~~likrrrr~ekc-rrlaeaqs 356 (721)
.|+-+|-|-++.+++...++.++.+++.|+..||.....-++.+..++..+.+.+++...+ +++++.++
T Consensus 62 aALNiadEl~k~~~~~~~L~~~l~~~~kE~~~lK~el~~~~~k~e~~~~e~~~l~~~~~~l~~~~~~le~ 131 (138)
T 3hnw_A 62 MYLNIADDYFKAKKMADSLSLDIENKDKEIYDLKHELIAAQIKAESSAKEIKELKSEINKYQKNIVKLET 131 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3555678999999999999999999999999999999999999999999998888776654 34554443
No 6
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=77.53 E-value=53 Score=31.71 Aligned_cols=126 Identities=11% Similarity=0.116 Sum_probs=81.7
Q ss_pred HHHHHHHHHHHHhHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHHHHHHHhhh----------------HHHHHHH
Q 047330 301 EETQKMQMEIQKLNEEVTDMRRANDEEKLDIQDLELELIKRRRRAEKCRQLAEAQSS----------------YRTMLEK 364 (721)
Q Consensus 301 ee~~~~q~e~~~l~~e~~~~k~~n~~er~~iq~le~~likrrrr~ekcrrlaeaqss----------------yr~~lek 364 (721)
.+-...+.++..|...+..++..-++-+..|..+|..+..-+.+.++.+.--.+-++ =...||.
T Consensus 32 ~el~~le~~~~~l~~~~~~~~~~l~d~~~~~~~~e~~i~~~~~ri~~~~~~l~~v~~~kE~~aL~kEie~~~~~i~~lE~ 111 (256)
T 3na7_A 32 KDLDKALNDKEAKNKAILNLEEEKLALKLQVSKNEQTLQDTNAKIASIQKKMSEIKSERELRSLNIEEDIAKERSNQANR 111 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455677888888888888888888888888889998888888888776543222222 2234666
Q ss_pred HHHHhhhhchhhHHHHhhhHHHHHHHHHHHHHHHHhhhh----hHHHHHHhhcchHHHHHhhchhH
Q 047330 365 MIRDAMHQSVIYKEQVRLNQVATNALMARLEAQKAICDS----AEKDLHKKFKQREEIEKQLRPER 426 (721)
Q Consensus 365 mirdamhqsv~ykeq~rlnqaa~~almarleaq~a~cd~----se~~l~kky~~rd~le~qi~Pe~ 426 (721)
-|...|.+-=-.++.+---++...++-+.|+.-++--+. .++++..-..+|++|...|-|.+
T Consensus 112 eile~~e~ie~~~~~l~~~~~~l~~~~~~l~~~~~~~~~~~~e~~~e~~~l~~~r~~l~~~i~~~l 177 (256)
T 3na7_A 112 EIENLQNEIKRKSEKQEDLKKEMLELEKLALELESLVENEVKNIKETQQIIFKKKEDLVEKTEPKI 177 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHH
Confidence 677777665444444444444444445555444443333 34455556678999998887754
No 7
>1gmj_A ATPase inhibitor; coiled-coil structure, P dependent oligomerization, ATP hydrolysis; 2.2A {Bos taurus} SCOP: h.4.8.1 PDB: 1ohh_H* 1hf9_A
Probab=60.08 E-value=20 Score=31.36 Aligned_cols=70 Identities=16% Similarity=0.208 Sum_probs=33.2
Q ss_pred CCCCCCChHHHHHHhhhhHHhHHHHHHHH----HHHHHhHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHH
Q 047330 279 TPDFVTNPYQAIVAARDSLKQREETQKMQ----MEIQKLNEEVTDMRRANDEEKLDIQDLELELIKRRRRAEKC 348 (721)
Q Consensus 279 ~pD~v~NPyqaIv~ARDslkqree~~~~q----~e~~~l~~e~~~~k~~n~~er~~iq~le~~likrrrr~ekc 348 (721)
.||+.--|-.+|.+|-++.-.||.|.+-+ .+...|.+--..|...-+.-+-.|.+||..+-.++.+..++
T Consensus 4 ~~~~~gggggsir~aggaFgKrEaA~Ee~YfrqkekEqL~~LKkkl~~el~~h~~ei~~le~~i~rhk~~i~~l 77 (84)
T 1gmj_A 4 SGDNVRSSAGAVRDAGGAFGKREQAEEERYFRARAKEQLAALKKHKENEISHHAKEIERLQKEIERHKQSIKKL 77 (84)
T ss_dssp ---------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcCCCCCCCCcccccCCCcccHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45666778889999999999999887533 33333332111111222334456888888888888777655
No 8
>2jb0_B Colicin E7; hydrolase/inhibitor, hydrolase/inhibitor complex, zinc, toxin, plasmid, nuclease, hydrolase, antibiotic, H-N-H motif, bacteriocin; 1.91A {Escherichia coli} SCOP: d.4.1.1 PDB: 3fbd_A 2jaz_B 2jbg_B 3gkl_A 3gjn_B 1pt3_A 2ivh_A 1ujz_B 2erh_B
Probab=57.26 E-value=4.1 Score=37.91 Aligned_cols=60 Identities=20% Similarity=0.337 Sum_probs=39.6
Q ss_pred CChHHHHHHHHHhhcc---------------cCCCCCCCCcccccCCCCEEeeccCCCCCceeecceeeecCCCCc-ccc
Q 047330 78 AKPKIFLSLLWKQLNH---------------LGNAGFDPAVIRVDPYGNVLYYHADSASPLAWEIDHWFPCSRGGL-TVP 141 (721)
Q Consensus 78 ~nPr~F~~~~W~qldh---------------lgnaG~DParwR~DAyGNVV~~had~~SpLgWEIDHIfP~SRGG~-Tv~ 141 (721)
.+=..|.+..|.-... + ..|+-|-.-..|-+| +--.|||.|+.|.+.||. -.+
T Consensus 45 ~sFd~FR~afW~eVs~DpeL~~QF~~~N~~rm-k~G~aP~~~~~e~vG----------~r~kfelHH~~~I~~GG~VYdl 113 (131)
T 2jb0_B 45 KSFDDFRKKFWEEVSKDPELSKQFSRNNNDRM-KVGKAPKTRTQDVSG----------KRTSFELHHEKPISQNGGVYDM 113 (131)
T ss_dssp SSHHHHHHHHHHHHHHCHHHHTTSCHHHHHHH-HTTCCCBCCGGGCBT----------TBCBCEEEESSCCC--CCSSBG
T ss_pred CCHHHHHHHHHHHHhcCHHHHHHhhHHHHHHH-HCCCCCCCCchhhcC----------CeeEEEEEeechhhcCCeeeee
Confidence 3445788899965431 1 124445444555554 345799999999999998 889
Q ss_pred cchhhhh
Q 047330 142 SNLRILQ 148 (721)
Q Consensus 142 sNLQiLQ 148 (721)
+||+|+-
T Consensus 114 DNL~i~T 120 (131)
T 2jb0_B 114 DNISVVT 120 (131)
T ss_dssp GGEEEEC
T ss_pred eeEEEcC
Confidence 9999874
No 9
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=56.79 E-value=36 Score=31.50 Aligned_cols=49 Identities=27% Similarity=0.409 Sum_probs=34.1
Q ss_pred HHHHhhhhHHhHHHHHHHHHHHHHhHHHHHHHHhccccccchHHHHHHHHHHHHHHHH
Q 047330 289 AIVAARDSLKQREETQKMQMEIQKLNEEVTDMRRANDEEKLDIQDLELELIKRRRRAE 346 (721)
Q Consensus 289 aIv~ARDslkqree~~~~q~e~~~l~~e~~~~k~~n~~er~~iq~le~~likrrrr~e 346 (721)
..+.-++||+.- .++ .|+.+++|+.|+.+|+++ +||.++.+..-|+--+
T Consensus 54 TV~tL~~SL~~e-kaq-~q~~vqeLqgEI~~Lnq~-------Lq~a~ae~erlr~~~~ 102 (121)
T 3mq7_A 54 TVMALMASLDAE-KAQ-GQKKVEELEGEITTLNHK-------LQDASAEVERLRRENQ 102 (121)
T ss_dssp HHHHHHHHHHHH-HHH-HHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH-HHH-HHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHhhch
Confidence 345557777642 222 277899999999999984 7888888876665443
No 10
>3he5_A Synzip1; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=53.48 E-value=15 Score=28.99 Aligned_cols=42 Identities=26% Similarity=0.362 Sum_probs=35.2
Q ss_pred HHHHHHHHhHHHHHHHHhccccccchHHHHHHHHHHHHHHHH
Q 047330 305 KMQMEIQKLNEEVTDMRRANDEEKLDIQDLELELIKRRRRAE 346 (721)
Q Consensus 305 ~~q~e~~~l~~e~~~~k~~n~~er~~iq~le~~likrrrr~e 346 (721)
..+.|++.|++|-..||.+|--.+-.|.-||..+..-|.+.|
T Consensus 7 qlenevaslenenetlkkknlhkkdliaylekeianlrkkie 48 (49)
T 3he5_A 7 QLENEVASLENENETLKKKNLHKKDLIAYLEKEIANLRKKIE 48 (49)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHhhcccHHHHHhcccHHHHHHHHHHHHHHHHHHhc
Confidence 456789999999999999998888888888888877776654
No 11
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=53.40 E-value=22 Score=28.38 Aligned_cols=39 Identities=15% Similarity=0.153 Sum_probs=31.7
Q ss_pred HHHHHHHHHhHHHHHHHHhccccccchHHHHHHHHHHHH
Q 047330 304 QKMQMEIQKLNEEVTDMRRANDEEKLDIQDLELELIKRR 342 (721)
Q Consensus 304 ~~~q~e~~~l~~e~~~~k~~n~~er~~iq~le~~likrr 342 (721)
++++..+..|+.+|..|+..|..=+-.|..|...+..-+
T Consensus 19 ~rKk~~~~~Le~~v~~L~~~n~~L~~ei~~L~~e~~~Lk 57 (63)
T 2wt7_A 19 NRRRELTDTLQAETDQLEDEKSALQTEIANLLKEKEKLE 57 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 367788999999999999999988888888877765443
No 12
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=52.26 E-value=16 Score=29.41 Aligned_cols=37 Identities=24% Similarity=0.295 Sum_probs=28.4
Q ss_pred HHHHHHHHHhHHHHHHHHhccccccchHHHHHHHHHH
Q 047330 304 QKMQMEIQKLNEEVTDMRRANDEEKLDIQDLELELIK 340 (721)
Q Consensus 304 ~~~q~e~~~l~~e~~~~k~~n~~er~~iq~le~~lik 340 (721)
.++..++..|+.++.+|++.|.+=+.-|..|+.++.-
T Consensus 19 ~KKk~~~~~le~~~~~L~~~N~~L~~~i~~L~~E~~~ 55 (63)
T 1ci6_A 19 QKKRAEQEALTGECKELEKKNEALKERADSLAKEIQY 55 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566777888888888888888877888888877643
No 13
>1fr2_B Colicin E9; protein-protein complex, zinc containing enzyme, HNH-motif, immune system; 1.60A {Escherichia coli} SCOP: d.4.1.1 PDB: 1bxi_B 1emv_B 1fsj_B 2gyk_B 2gze_B 2gzf_B 2gzg_B 2gzi_B 2gzj_B 2k5x_B 2vlo_B 2wpt_B 2vlp_B 2vln_B 2vlq_B 1v13_A 1v14_A 1v15_A 3u43_B 1znv_B ...
Probab=51.83 E-value=5.1 Score=37.39 Aligned_cols=60 Identities=22% Similarity=0.419 Sum_probs=41.3
Q ss_pred CChHHHHHHHHHhhcc---------------cCCCCCCCCcccccCCCCEEeeccCCCCCceeecceeeecCCCCc-ccc
Q 047330 78 AKPKIFLSLLWKQLNH---------------LGNAGFDPAVIRVDPYGNVLYYHADSASPLAWEIDHWFPCSRGGL-TVP 141 (721)
Q Consensus 78 ~nPr~F~~~~W~qldh---------------lgnaG~DParwR~DAyGNVV~~had~~SpLgWEIDHIfP~SRGG~-Tv~ 141 (721)
.+=..|.+..|.-... + ..|+-|-.-..|-+|. --.|||.|..|.+.||. -.+
T Consensus 48 ~sFd~FR~afW~eVs~DpeL~~QF~~~N~~rm-k~G~aP~~~~~e~vG~----------r~kfelHH~~~I~~GG~VYdl 116 (134)
T 1fr2_B 48 KSFDDFRKAVWEEVSKDPELSKNLNPSNKSSV-SKGYSPFTPKNQQVGG----------RKVYELHHDKPISQGGEVYDM 116 (134)
T ss_dssp SSHHHHHHHHHHHHHHCHHHHTTSCHHHHHHH-HTTCCCBCCGGGCBTT----------BCBCEEEESSCGGGTCCSSBG
T ss_pred CCHHHHHHHHHHHHhcCHHHHHHhCHHHHHHH-HCCCCCCCcchhhcCC----------eeEEEEEecchhhcCCeeeee
Confidence 3445788899965431 1 1244444444454444 24799999999999998 889
Q ss_pred cchhhhh
Q 047330 142 SNLRILQ 148 (721)
Q Consensus 142 sNLQiLQ 148 (721)
+||+|+-
T Consensus 117 DNL~i~T 123 (134)
T 1fr2_B 117 DNIRVTT 123 (134)
T ss_dssp GGEEEEC
T ss_pred ecEEEcC
Confidence 9999874
No 14
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=42.44 E-value=96 Score=40.62 Aligned_cols=84 Identities=8% Similarity=0.233 Sum_probs=56.7
Q ss_pred HHHhhhhHHh-HHHHHHHHHHHHHhHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHH-----------HHHHHHhhh
Q 047330 290 IVAARDSLKQ-REETQKMQMEIQKLNEEVTDMRRANDEEKLDIQDLELELIKRRRRAEKC-----------RQLAEAQSS 357 (721)
Q Consensus 290 Iv~ARDslkq-ree~~~~q~e~~~l~~e~~~~k~~n~~er~~iq~le~~likrrrr~ekc-----------rrlaeaqss 357 (721)
+..|-..|.. .++-+++|++|++|++.+..|+.+-++----.+.|+..+..-.+|.+.+ -||.++-..
T Consensus 2016 l~~ae~~l~~~~~~L~~~~~~L~~le~~l~~L~~~~~~~~~ek~~L~~e~~~~~~kl~rA~~Li~gL~~Ek~RW~~~~~~ 2095 (3245)
T 3vkg_A 2016 VEQLENAANELKLKQDEIVATITALEKSIATYKEEYATLIRETEQIKTESSKVKNKVDRSIALLDNLNSERGRWEQQSEN 2095 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccHHHHHHH
Confidence 3444444443 3334478889999999999998876655445566666665555544433 478888888
Q ss_pred HHHHHHHHHHHhhhhc
Q 047330 358 YRTMLEKMIRDAMHQS 373 (721)
Q Consensus 358 yr~~lekmirdamhqs 373 (721)
+..-+..++-|.+=-+
T Consensus 2096 l~~~~~~L~GD~LLaa 2111 (3245)
T 3vkg_A 2096 FNTQMSTVVGDVVLAS 2111 (3245)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHhccHHHHHHH
Confidence 9999999888876543
No 15
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=41.11 E-value=50 Score=34.13 Aligned_cols=38 Identities=21% Similarity=0.216 Sum_probs=15.4
Q ss_pred HHHhHHHHHHHHhccccccchHHHHHHHHHHHHHHHHH
Q 047330 310 IQKLNEEVTDMRRANDEEKLDIQDLELELIKRRRRAEK 347 (721)
Q Consensus 310 ~~~l~~e~~~~k~~n~~er~~iq~le~~likrrrr~ek 347 (721)
.+.++.+....++.-++.+-.++.||...++-+++.++
T Consensus 518 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~ 555 (597)
T 3oja_B 518 QAFKLRETQARRTEADAKQKETEDLEQENIALEKQLDN 555 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhHHHHHHHHHhhhhhhcchhhHHhhhHHHHHHHhh
Confidence 33333333344433333333444444444444444333
No 16
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=40.24 E-value=31 Score=27.89 Aligned_cols=39 Identities=13% Similarity=0.245 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHhccccccchHHHHHHHH
Q 047330 300 REETQKMQMEIQKLNEEVTDMRRANDEEKLDIQDLELEL 338 (721)
Q Consensus 300 ree~~~~q~e~~~l~~e~~~~k~~n~~er~~iq~le~~l 338 (721)
|.=-.+|++.+.+|+.+|..|+..|.+=+-.|..|-..|
T Consensus 22 rrsR~RK~~~~~~Le~~v~~L~~eN~~L~~ev~~Lr~~l 60 (63)
T 2dgc_A 22 RRSRARKLQRMKQLEDKVEELLSKNYHLENEVARLKKLV 60 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333357899999999999999998876555454444333
No 17
>7cei_B Protein (colicin E7 immunity protein); DNAse, E-group colicins, protein-protein interaction, protei recognition, immune system; 2.30A {Escherichia coli str} SCOP: d.4.1.1
Probab=36.86 E-value=13 Score=36.89 Aligned_cols=63 Identities=21% Similarity=0.327 Sum_probs=41.8
Q ss_pred CCCCChHHHHHHHHHhhcc---------------cCCCCCCCCcccccCCCCEEeeccCCCCCceeecceeeecCCCCc-
Q 047330 75 KPTAKPKIFLSLLWKQLNH---------------LGNAGFDPAVIRVDPYGNVLYYHADSASPLAWEIDHWFPCSRGGL- 138 (721)
Q Consensus 75 ~~~~nPr~F~~~~W~qldh---------------lgnaG~DParwR~DAyGNVV~~had~~SpLgWEIDHIfP~SRGG~- 138 (721)
+.-.+=..|.+..|.-... + -.|+-|-.-+.|-+|. ---|||.|+.|.+.||.
T Consensus 117 R~F~sFD~FR~AFWkeVa~DPeLskQF~~~N~~~M-k~G~AP~ap~~e~vG~----------R~kfELHH~~~I~~GG~V 185 (206)
T 7cei_B 117 KEFKSFDDFRKKFWEEVSKDPELSKQFSRNNNDRM-KVGKAPKTRTQDVSGK----------RTSFELHHEKPISQNGGV 185 (206)
T ss_dssp CBCSSHHHHHHHHHHHHTTCTTTGGGSCHHHHHHH-HTTCCCBCCGGGCBTT----------BCBCEEEESSCSSSSCCS
T ss_pred CcCCCHHHHHHHHHHHHccCHHHHHHHhHHHHHHH-HCCCCCCCChhhhcCC----------eeeEEeecCcccccCCee
Confidence 3445667889999985432 1 0133343334444443 24799999999999987
Q ss_pred ccccchhhhh
Q 047330 139 TVPSNLRILQ 148 (721)
Q Consensus 139 Tv~sNLQiLQ 148 (721)
=.++||+|+-
T Consensus 186 YDiDNLrI~T 195 (206)
T 7cei_B 186 YDMDNISVVT 195 (206)
T ss_dssp SBTTSEEEEC
T ss_pred ecccceeecC
Confidence 5699999863
No 18
>2efl_A Formin-binding protein 1; EFC domain, structural genomics, NPPSFA, national project on structural and functional analyses; 2.61A {Homo sapiens} SCOP: a.238.1.4
Probab=36.22 E-value=1.8e+02 Score=27.20 Aligned_cols=13 Identities=23% Similarity=0.703 Sum_probs=6.7
Q ss_pred HHHhhhHHHHHHH
Q 047330 352 AEAQSSYRTMLEK 364 (721)
Q Consensus 352 aeaqssyr~~lek 364 (721)
.+|...|+.+|..
T Consensus 189 ~~a~~~Y~~~v~~ 201 (305)
T 2efl_A 189 EDSKADYSSILQK 201 (305)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3455555555543
No 19
>3ni0_A Bone marrow stromal antigen 2; coiled-coil, antiviral defense, immune system, GPI anchor; 1.60A {Mus musculus}
Probab=35.92 E-value=54 Score=29.48 Aligned_cols=36 Identities=25% Similarity=0.443 Sum_probs=24.8
Q ss_pred HHHHHhhhhHHhHHH-HHHHHHHHHHhHHHHHHHHhc
Q 047330 288 QAIVAARDSLKQREE-TQKMQMEIQKLNEEVTDMRRA 323 (721)
Q Consensus 288 qaIv~ARDslkqree-~~~~q~e~~~l~~e~~~~k~~ 323 (721)
+..+.-|+||+.-.. .++.|+.+++|+.|+..|+++
T Consensus 46 qTV~tL~~SL~kekaq~q~qq~~v~elqgEI~~Lnq~ 82 (99)
T 3ni0_A 46 LTVVTLQESLEKKVSQALEQQARIKELENEVTKLNQE 82 (99)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 345666778764322 236678888888888888875
No 20
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=35.33 E-value=80 Score=25.34 Aligned_cols=50 Identities=22% Similarity=0.240 Sum_probs=39.9
Q ss_pred HHHhhhhHHhHHHHHHHHHHHHHhHHHHHHHHhccccccchHHHHHHHHH
Q 047330 290 IVAARDSLKQREETQKMQMEIQKLNEEVTDMRRANDEEKLDIQDLELELI 339 (721)
Q Consensus 290 Iv~ARDslkqree~~~~q~e~~~l~~e~~~~k~~n~~er~~iq~le~~li 339 (721)
++++|--.|.+++...++.++..|+.+..+|+.+-..-+--++.|-..|+
T Consensus 12 ~AA~R~R~KKk~~~~~le~~~~~L~~~N~~L~~~i~~L~~E~~~Lk~ll~ 61 (63)
T 1ci6_A 12 TAATRYRQKKRAEQEALTGECKELEKKNEALKERADSLAKEIQYLKDLIE 61 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 56777778888899999999999999988888887776666777765554
No 21
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=35.15 E-value=67 Score=37.34 Aligned_cols=51 Identities=16% Similarity=0.272 Sum_probs=28.4
Q ss_pred CCCCCccccCCCChhhhH-HHHhhh---hhcCCCCCCCC-CCCChHHHHHHHHHhh
Q 047330 41 HGPPFCFTPYPLQEDESS-RAKQLE---KMFPVIDPKAK-PTAKPKIFLSLLWKQL 91 (721)
Q Consensus 41 ~GPP~~F~Py~~q~~e~~-~~kdld---~mFPv~~~~~~-~~~nPr~F~~~~W~ql 91 (721)
+|=+..|+.|.+.-.... ....=. ++|.++|.... |.+.-..|.+.|.++.
T Consensus 507 Egi~~~~i~~~~dn~~~~~lie~~~~~~Gil~lLdee~~~p~~td~~~~~kl~~~~ 562 (1184)
T 1i84_S 507 EGIEWNFIDFGLDLQPCIELIERPTNPPGVLALLDEECWFPKATDTSFVEKLIQEQ 562 (1184)
T ss_dssp HTCSCCCCCCCCCCHHHHHTTSCCSSSCCHHHHHHHTTSCTTCCHHHHHHHHHHHT
T ss_pred cCCCccccccCCCcHHHHHHHhCCCCCCCchhhhhhhhCCCCCChHHHHHHHHHHh
Confidence 466777788853322221 111111 56666655443 4467778988888765
No 22
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=34.13 E-value=1.1e+02 Score=35.75 Aligned_cols=35 Identities=17% Similarity=0.301 Sum_probs=15.9
Q ss_pred HHHHHhHHHHHHHHhccccccchHHHHHHHHHHHH
Q 047330 308 MEIQKLNEEVTDMRRANDEEKLDIQDLELELIKRR 342 (721)
Q Consensus 308 ~e~~~l~~e~~~~k~~n~~er~~iq~le~~likrr 342 (721)
.|+.+|++++.+++.+-+...-.+.+|+..|.+-+
T Consensus 857 ~El~~L~~eL~el~~~L~~le~~l~ele~~l~~Le 891 (1184)
T 1i84_S 857 EEMQAKDEELQRTKERQQKAEAELKELEQKHTQLC 891 (1184)
T ss_dssp HHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555544443333334445555444443
No 23
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=33.99 E-value=69 Score=25.35 Aligned_cols=36 Identities=19% Similarity=0.259 Sum_probs=30.2
Q ss_pred HHHHHHHHhHHHHHHHHhccccccchHHHHHHHHHH
Q 047330 305 KMQMEIQKLNEEVTDMRRANDEEKLDIQDLELELIK 340 (721)
Q Consensus 305 ~~q~e~~~l~~e~~~~k~~n~~er~~iq~le~~lik 340 (721)
++...+..|+.+|.+|...|.+=+-.|..|+..+..
T Consensus 19 rKk~~~~~Le~~v~~L~~~n~~L~~~v~~L~~e~~~ 54 (62)
T 1jnm_A 19 RKLERIARLEEKVKTLKAQNSELASTANMLREQVAQ 54 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 577889999999999999999888888888776643
No 24
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=33.83 E-value=1.8e+02 Score=34.08 Aligned_cols=51 Identities=10% Similarity=0.188 Sum_probs=32.6
Q ss_pred CCCCCccccCCCChhhhHHHHhhhhhcCCCCCCCC-CCCChHHHHHHHHHhh
Q 047330 41 HGPPFCFTPYPLQEDESSRAKQLEKMFPVIDPKAK-PTAKPKIFLSLLWKQL 91 (721)
Q Consensus 41 ~GPP~~F~Py~~q~~e~~~~kdld~mFPv~~~~~~-~~~nPr~F~~~~W~ql 91 (721)
+|=+..|+.|.--..-+.....=.++|.++|.... |.++-..|++.|..+.
T Consensus 480 EgI~w~~i~f~dn~~~idlie~~~Gil~lLdee~~~p~~tD~~f~~kl~~~~ 531 (1080)
T 2dfs_A 480 EQIPWTLIDFYDNQPCINLIEAKMGVLDLLDEECKMPKGSDDTWAQKLYNTH 531 (1080)
T ss_dssp HTCCTTCCCCCCCHHHHHHHHSTTSHHHHHHHHTTSTTCCHHHHHHHHHHHH
T ss_pred cCCccccccccccHHHHHHHhcCCceeeeccccccCCCCChHHHHHHHHHHh
Confidence 46677788885444433333333567888775543 4567888999888774
No 25
>3dcl_A TM1086; SAD, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG, U function; 2.25A {Thermotoga maritima} PDB: 3n99_A
Probab=33.29 E-value=15 Score=37.77 Aligned_cols=29 Identities=28% Similarity=0.297 Sum_probs=24.3
Q ss_pred ccccCCCCEEee---------ccCCCCCceeecceeee
Q 047330 104 IRVDPYGNVLYY---------HADSASPLAWEIDHWFP 132 (721)
Q Consensus 104 wR~DAyGNVV~~---------had~~SpLgWEIDHIfP 132 (721)
||+|..|+.-.+ ..-.+|+++|.-|||=|
T Consensus 28 yrv~~dG~p~ilP~~GGItyNv~vGD~afg~aGDHvEP 65 (284)
T 3dcl_A 28 YSVTTEGTVRVIPVLGGITYNVKVGDSAYGWAGDHVEP 65 (284)
T ss_dssp CEECTTSCEECCCCSBSEESSCCTTSBSSSCBSSSCCC
T ss_pred eEECCCCCEeeccccCcEEEeeeeCCccccccccccCC
Confidence 999999998764 22667889999999988
No 26
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=33.01 E-value=60 Score=25.55 Aligned_cols=38 Identities=18% Similarity=0.277 Sum_probs=31.1
Q ss_pred HHHHHHHHhHHHHHHHHhccccccchHHHHHHHHHHHH
Q 047330 305 KMQMEIQKLNEEVTDMRRANDEEKLDIQDLELELIKRR 342 (721)
Q Consensus 305 ~~q~e~~~l~~e~~~~k~~n~~er~~iq~le~~likrr 342 (721)
++...+..|+.+|..|...|.+=+-.|+.|..++..-+
T Consensus 19 rKk~~~~~Le~~~~~L~~~n~~L~~~i~~L~~e~~~Lk 56 (61)
T 1t2k_D 19 KRKVWVQSLEKKAEDLSSLNGQLQSEVTLLRNEVAQLK 56 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56678899999999999999988888888887766544
No 27
>1loi_A Cyclic 3',5'-AMP specific phosphodiesterase RD1; hydrolase, C-AMP phosphodiesterase; NMR {Rattus norvegicus} SCOP: j.51.1.1
Probab=32.64 E-value=9.9 Score=26.92 Aligned_cols=9 Identities=44% Similarity=1.450 Sum_probs=7.8
Q ss_pred Ccccccccc
Q 047330 159 PEFVVPWWD 167 (721)
Q Consensus 159 le~lvpWwd 167 (721)
-.|||.|||
T Consensus 13 kpwlvgwwd 21 (26)
T 1loi_A 13 KPWLVGWWD 21 (26)
T ss_dssp CTTGGGGHH
T ss_pred CchhhhhHH
Confidence 479999998
No 28
>1i4d_A Arfaptin 2, partner of RAC1; coiled coil, G-protein, complex, signaling protein; HET: GDP; 2.50A {Homo sapiens} SCOP: a.238.1.2 PDB: 1i49_A* 1i4l_A* 1i4t_A*
Probab=32.33 E-value=2.9e+02 Score=27.26 Aligned_cols=85 Identities=14% Similarity=0.154 Sum_probs=56.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhhchhhHHHHhhhHHHHHHHHHHHHHHHHhhhhhHHHHHHh
Q 047330 332 QDLELELIKRRRRAEKCRQLAEAQSSYRTMLEKMIRDAMHQSVIYKEQVRLNQVATNALMARLEAQKAICDSAEKDLHKK 411 (721)
Q Consensus 332 q~le~~likrrrr~ekcrrlaeaqssyr~~lekmirdamhqsv~ykeq~rlnqaa~~almarleaq~a~cd~se~~l~kk 411 (721)
.+||+.|..-|.-..+|+.|.+.-..|-..+-.|+..----.-++.++.----.|..+...==++|+.+|
T Consensus 7 ~EL~~klE~l~~~q~~Y~~L~~~~~~l~~~~~~l~qtq~~lG~~f~~l~~~~p~l~~~f~~~~~~~r~~~---------- 76 (224)
T 1i4d_A 7 LELELQIELLRETKRKYESVLQLGRALTAHLYSLLQTQHALGDAFADLSQKSPELQEEFGYNAETQKLLC---------- 76 (224)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHH----------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCcHHHHHHHHHHHHHHHHH----------
Confidence 5789999999999999999988888887777777654322233444443333445566666667777776
Q ss_pred hcchHHHHHhhchhHH
Q 047330 412 FKQREEIEKQLRPERE 427 (721)
Q Consensus 412 y~~rd~le~qi~Pe~e 427 (721)
+++..|-+.|+|+..
T Consensus 77 -k~g~~Ll~~L~~f~s 91 (224)
T 1i4d_A 77 -KNGETLLGAVNFFVS 91 (224)
T ss_dssp -HHHHHHHHHHHHHHH
T ss_pred -HhHHHHHHHHHHHHH
Confidence 455666666666543
No 29
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=31.57 E-value=2.5e+02 Score=24.84 Aligned_cols=30 Identities=23% Similarity=0.391 Sum_probs=13.2
Q ss_pred HHHHHHhHHHHHHHHhccccccchHHHHHH
Q 047330 307 QMEIQKLNEEVTDMRRANDEEKLDIQDLEL 336 (721)
Q Consensus 307 q~e~~~l~~e~~~~k~~n~~er~~iq~le~ 336 (721)
..|+..+++++..|+.+-..+--...+||.
T Consensus 12 e~E~~~~~eel~~lke~l~k~e~~r~ele~ 41 (129)
T 2fxo_A 12 EKEMASMKEEFTRLKEALEKSEARRKELEE 41 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555554443333333334433
No 30
>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1
Probab=29.74 E-value=64 Score=25.44 Aligned_cols=30 Identities=17% Similarity=0.236 Sum_probs=22.6
Q ss_pred HHHHHHHHhHHHHHHHHhccccccchHHHH
Q 047330 305 KMQMEIQKLNEEVTDMRRANDEEKLDIQDL 334 (721)
Q Consensus 305 ~~q~e~~~l~~e~~~~k~~n~~er~~iq~l 334 (721)
.|++-+.+|+..|..|...|..=+-.+..|
T Consensus 19 RKk~~~~~LE~~v~~L~~eN~~L~~~~~~L 48 (55)
T 1dh3_A 19 KKKEYVKSLENRVAVLENQNKTLIEELKAL 48 (55)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 677889999999999988876555444444
No 31
>2p22_C Protein SRN2; endosome, trafficking complex, VPS23, VPS28, VPS37, MVB12; 2.70A {Saccharomyces cerevisiae} PDB: 2caz_C 2f66_C
Probab=28.46 E-value=3.7e+02 Score=25.77 Aligned_cols=45 Identities=16% Similarity=0.240 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHhhhhhHHHHHHhhcch---HHHHHhhchhHHhhhhhc
Q 047330 388 NALMARLEAQKAICDSAEKDLHKKFKQR---EEIEKQLRPEREHARKRS 433 (721)
Q Consensus 388 ~almarleaq~a~cd~se~~l~kky~~r---d~le~qi~Pe~eq~RKRs 433 (721)
.+|.+||.+--+--|.-=..|..+|..+ .++..-|+=+.+. ||-|
T Consensus 127 ~~L~~~L~~a~~e~eeeS~~l~~~F~~~~~e~dv~~Fl~~y~~~-R~~y 174 (192)
T 2p22_C 127 IALKKKLEQNTKKLDEESSQLETTTRSIDSADDLDQFIKNYLDI-RTQY 174 (192)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHSCSCCCCHHHHHHHHHHHHHH-HHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHH-HHHH
Confidence 4566666553333333223466777764 5777777665554 5544
No 32
>3haj_A Human pacsin2 F-BAR; pacsin,syndapin,FAP52,F-BAR, alternative splicing, coiled coil, cytoplasmic vesicle, endocytosis, phosphoprotein, polymorphism; 2.78A {Homo sapiens}
Probab=26.35 E-value=2e+02 Score=29.97 Aligned_cols=29 Identities=28% Similarity=0.595 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHH-HHHHhhhHHHHHHHH
Q 047330 337 ELIKRRRRAEKCRQ-LAEAQSSYRTMLEKM 365 (721)
Q Consensus 337 ~likrrrr~ekcrr-laeaqssyr~~lekm 365 (721)
.+.|.+.+++||.. +.+|...|+.+|.+.
T Consensus 186 ~~eK~~~k~~k~~~~~~~a~~~Y~~~v~~~ 215 (486)
T 3haj_A 186 QLKKLQDKIEKCKQDVLKTKEKYEKSLKEL 215 (486)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46677777777754 456777888887766
No 33
>1s94_A S-syntaxin; three helix bundle, structural plasticity, endocytosis-exocy complex; 3.34A {Loligo pealei} SCOP: a.47.2.1
Probab=26.22 E-value=3.7e+02 Score=24.33 Aligned_cols=107 Identities=16% Similarity=0.272 Sum_probs=61.4
Q ss_pred HHHHHHHHHHHHhHHHHHHHHhcccccc-------chHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhhc
Q 047330 301 EETQKMQMEIQKLNEEVTDMRRANDEEK-------LDIQDLELELIKRRRRAEKCRQLAEAQSSYRTMLEKMIRDAMHQS 373 (721)
Q Consensus 301 ee~~~~q~e~~~l~~e~~~~k~~n~~er-------~~iq~le~~likrrrr~ekcrrlaeaqssyr~~lekmirdamhqs 373 (721)
.+....+..|..|..-|..|+..+..-. -.=++|+.....-.+.+.+|+..-++ |++.+...-+..
T Consensus 43 ~~v~~I~~~i~~i~~~v~~l~~~~~~~L~~~~~~~~~k~~le~l~~~i~~~a~~ik~~Lk~-------l~~~~~~~~~~~ 115 (180)
T 1s94_A 43 EQVEEIRAMIDKISDNVDAVKKKHSDILSAPQTDDQMKEELEELMTDIKRTANKVRGKLKT-------IELNIEQEEHSN 115 (180)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCC-------CHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHTC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHhhhccC
Confidence 4556677778888888888877654321 12255666665566666666544332 233333221100
Q ss_pred hhhHHHHhhhHHHHHHHHHHHHHHHHhhhhhHHHHHHhhcch
Q 047330 374 VIYKEQVRLNQVATNALMARLEAQKAICDSAEKDLHKKFKQR 415 (721)
Q Consensus 374 v~ykeq~rlnqaa~~almarleaq~a~cd~se~~l~kky~~r 415 (721)
..--+ .|+.+.-.++|..+|-.--.-|...+...+.+|+.|
T Consensus 116 ~~s~~-~Rir~~q~~~L~~kf~~~m~~yq~~q~~y~~~~K~~ 156 (180)
T 1s94_A 116 KSSAD-LRIRKTQYSTISRKFVEVMSDYNTTQIDYRDRCKAR 156 (180)
T ss_dssp --CCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHSCTTCCCCC
T ss_pred CCcHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 00011 256666678899998777667777777777777765
No 34
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=25.07 E-value=3.8e+02 Score=24.17 Aligned_cols=73 Identities=16% Similarity=0.251 Sum_probs=49.9
Q ss_pred HhhhhHHhHHHHHHHH--HHHHHhHHHHHHHHhccccccchHHHHHHHHHHH-HHHHHHHHHHHHHhhhHHHHHHH
Q 047330 292 AARDSLKQREETQKMQ--MEIQKLNEEVTDMRRANDEEKLDIQDLELELIKR-RRRAEKCRQLAEAQSSYRTMLEK 364 (721)
Q Consensus 292 ~ARDslkqree~~~~q--~e~~~l~~e~~~~k~~n~~er~~iq~le~~likr-rrr~ekcrrlaeaqssyr~~lek 364 (721)
+=.|++|-+=+..+.+ ..+..|+.++..|+..++.=...|.+||..---- |...-.|--|+.-.+-|-..+|+
T Consensus 17 ~E~e~~k~K~~~~~~e~~~~~~~Lq~El~~lr~~~~~l~~~iReLEq~NDDLER~~R~t~~SLeD~E~k~n~aiEr 92 (111)
T 2v66_B 17 YEVEALKEKLEHQYAQSYKQVSVLEDDLSQTRAIKEQLHKYVRELEQANDDLERAKRATIVSLEDFEQRLNQAIER 92 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 3346666555544433 5688999999999999999999999999764321 22233566677777777666664
No 35
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=23.26 E-value=1.3e+02 Score=30.49 Aligned_cols=18 Identities=17% Similarity=-0.051 Sum_probs=10.3
Q ss_pred ccccchhhhhHhhhcccC
Q 047330 139 TVPSNLRILQWQVCKRKH 156 (721)
Q Consensus 139 Tv~sNLQiLQWqvNr~Ks 156 (721)
+.+.....|+|-....+.
T Consensus 198 ~~~~~~~al~~~~~l~~~ 215 (471)
T 3mq9_A 198 DNAGAKAGLTFLVDLIKN 215 (471)
T ss_dssp SSHHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHHhc
Confidence 334556677766665544
No 36
>2pih_A Protein YMCA; regulate community development, structural genomics, PSI-2, protein structure initiative; 2.10A {Bacillus subtilis} SCOP: a.281.1.1
Probab=22.05 E-value=4.5e+02 Score=23.84 Aligned_cols=78 Identities=10% Similarity=0.252 Sum_probs=54.1
Q ss_pred CChHHHHHHhhhhHHhHHHHHHHHHHHHHhHHHHHHHHhccccccchHHHHHHHHHHHHHHH---HHHHHHHHHhhhHHH
Q 047330 284 TNPYQAIVAARDSLKQREETQKMQMEIQKLNEEVTDMRRANDEEKLDIQDLELELIKRRRRA---EKCRQLAEAQSSYRT 360 (721)
Q Consensus 284 ~NPyqaIv~ARDslkqree~~~~q~e~~~l~~e~~~~k~~n~~er~~iq~le~~likrrrr~---ekcrrlaeaqssyr~ 360 (721)
+.-|++...|...+.+=++++++-.++.++..++...++....+ ..++....+.+-.+.. +....+-+||...-.
T Consensus 23 seeyk~yk~A~~~i~~D~eaq~li~eF~~~Q~~~~~~q~~Gk~~--~~~e~~~el~~l~~~l~~np~V~~y~~Ae~~l~~ 100 (151)
T 2pih_A 23 TEEVDFFKRAEAQINENDKVSTIVNQIKALQKQAVNLKHYEKHE--ALKQVEAKIDALQEELEEIPVIQEFRDSQMEVND 100 (151)
T ss_dssp BHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHTTCHH--HHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHcCCcc--chHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHH
Confidence 45689999999999999999999999999999998888755433 3444444444433333 345556666665555
Q ss_pred HHH
Q 047330 361 MLE 363 (721)
Q Consensus 361 ~le 363 (721)
+|.
T Consensus 101 LL~ 103 (151)
T 2pih_A 101 LLQ 103 (151)
T ss_dssp HHH
T ss_pred HHH
Confidence 554
No 37
>3nvo_A Zinc transport protein ZNTB; alpha-beta-alpha sandwich, zinc efflux system, membrane, TRA protein; 2.30A {Salmonella enterica} PDB: 3nwi_A
Probab=20.55 E-value=5e+02 Score=24.15 Aligned_cols=45 Identities=18% Similarity=0.195 Sum_probs=30.2
Q ss_pred HHHHHHHHHhHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHHHH
Q 047330 304 QKMQMEIQKLNEEVTDMRRANDEEKLDIQDLELELIKRRRRAEKCRQL 351 (721)
Q Consensus 304 ~~~q~e~~~l~~e~~~~k~~n~~er~~iq~le~~likrrrr~ekcrrl 351 (721)
.+...++.+||+++- .. +.+..-.|.+|...|++-||-..=.|.+
T Consensus 165 ~~l~~~id~lE~~l~--~~-~~~~l~~l~~lrr~l~~lrr~l~p~~~v 209 (264)
T 3nvo_A 165 EELHDKIIDLEDNLL--DQ-QIPPRGFLALLRKQLIVMRRYMAPQRDV 209 (264)
T ss_dssp HHHHHHHHHHTTC-------CCCCTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHh--cC-CchhHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 466677777887774 33 5666778899999999888876555443
No 38
>4fla_A Regulation of nuclear PRE-mRNA domain-containing 1B; structural genomics consortium, SGC, transcription; 2.20A {Homo sapiens}
Probab=20.16 E-value=3.8e+02 Score=24.90 Aligned_cols=17 Identities=6% Similarity=0.460 Sum_probs=11.0
Q ss_pred hhHHhHHHHHHHHHHHH
Q 047330 295 DSLKQREETQKMQMEIQ 311 (721)
Q Consensus 295 Dslkqree~~~~q~e~~ 311 (721)
++++-|+++.+...++.
T Consensus 62 ~klkDk~~~e~l~~~ve 78 (152)
T 4fla_A 62 EKITDKEAAERLSKTVD 78 (152)
T ss_dssp GGCCSHHHHHHHHHHHH
T ss_pred HHcccHHHHHHHHHHHH
Confidence 46677777776666543
Done!