Query 047330
Match_columns 721
No_of_seqs 71 out of 73
Neff 2.2
Searched_HMMs 13730
Date Mon Mar 25 17:39:46 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047330.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/047330hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2jb0b1 d.4.1.1 (B:449-572) DN 56.6 1.8 0.00013 37.9 1.4 61 77-148 41-117 (124)
2 d2gykb1 d.4.1.1 (B:4-133) DNas 52.2 2.1 0.00015 37.7 1.2 61 77-148 44-120 (130)
3 d1bjta_ e.11.1.1 (A:) DNA topo 21.0 59 0.0043 34.1 6.2 67 278-345 686-755 (760)
4 d2zkmx3 b.55.1.1 (X:11-141) Ph 17.1 24 0.0017 29.3 1.6 42 99-140 23-64 (131)
5 d2b5id1 g.18.1.1 (D:1-64) Inte 14.4 22 0.0016 27.9 0.6 14 685-698 28-42 (64)
6 d1b0na1 a.34.1.1 (A:74-108) Si 14.1 33 0.0024 24.2 1.4 18 363-381 6-23 (35)
7 d1bvyf_ c.23.5.1 (F:) FMN-bind 13.6 68 0.005 26.4 3.7 26 74-102 9-34 (152)
8 d2oeea1 a.281.1.2 (A:3-112) Hy 12.0 2.3E+02 0.017 21.9 6.3 78 284-365 17-98 (110)
9 d1m7xa3 c.1.8.1 (A:227-622) 1, 11.1 30 0.0022 29.7 0.6 25 12-36 80-104 (396)
10 d1p3da2 c.59.1.1 (A:322-473) U 10.3 61 0.0044 25.1 2.1 16 562-577 136-151 (152)
No 1
>d2jb0b1 d.4.1.1 (B:449-572) DNase domain of colicin E7 {Escherichia coli [TaxId: 562]}
Probab=56.63 E-value=1.8 Score=37.87 Aligned_cols=61 Identities=20% Similarity=0.328 Sum_probs=41.0
Q ss_pred CCChHHHHHHHHHhhcc---------------cCCCCCCCCcccccCCCCEEeeccCCCCCceeecceeeecCCCCcc-c
Q 047330 77 TAKPKIFLSLLWKQLNH---------------LGNAGFDPAVIRVDPYGNVLYYHADSASPLAWEIDHWFPCSRGGLT-V 140 (721)
Q Consensus 77 ~~nPr~F~~~~W~qldh---------------lgnaG~DParwR~DAyGNVV~~had~~SpLgWEIDHIfP~SRGG~T-v 140 (721)
=.+=..|.+..|+-... + ..|+-|-.-+.|-+|.. --||+.|..|.+.||.= .
T Consensus 41 F~sFd~FR~afW~~Va~DpeL~~QF~~~N~~rm-k~G~AP~a~~~e~vG~r----------~kfElHH~~~I~~GG~VYd 109 (124)
T d2jb0b1 41 FKSFDDFRKKFWEEVSKDPELSKQFSRNNNDRM-KVGKAPKTRTQDVSGKR----------TSFELHHEKPISQNGGVYD 109 (124)
T ss_dssp ESSHHHHHHHHHHHHHHCHHHHTTSCHHHHHHH-HTTCCCBCCGGGCBTTB----------CBCEEEESSCCC--CCSSB
T ss_pred CCCHHHHHHHHHHHHhcCHHHHHHhCHHHHHHH-hCCCCCCCChhhhcCCe----------eEEEeccCcccccCCeeee
Confidence 34556788889975432 1 23666666667777763 25899999999998832 2
Q ss_pred ccchhhhh
Q 047330 141 PSNLRILQ 148 (721)
Q Consensus 141 ~sNLQiLQ 148 (721)
++||+|+-
T Consensus 110 iDNLrI~T 117 (124)
T d2jb0b1 110 MDNISVVT 117 (124)
T ss_dssp GGGEEEEC
T ss_pred ccceeecC
Confidence 99999873
No 2
>d2gykb1 d.4.1.1 (B:4-133) DNase domain of colicin E9 {Escherichia coli [TaxId: 562]}
Probab=52.17 E-value=2.1 Score=37.66 Aligned_cols=61 Identities=21% Similarity=0.405 Sum_probs=41.4
Q ss_pred CCChHHHHHHHHHhhcc---------------cCCCCCCCCcccccCCCCEEeeccCCCCCceeecceeeecCCCCcc-c
Q 047330 77 TAKPKIFLSLLWKQLNH---------------LGNAGFDPAVIRVDPYGNVLYYHADSASPLAWEIDHWFPCSRGGLT-V 140 (721)
Q Consensus 77 ~~nPr~F~~~~W~qldh---------------lgnaG~DParwR~DAyGNVV~~had~~SpLgWEIDHIfP~SRGG~T-v 140 (721)
-.+=..|.+..|+-... + ..|+-|-.-..|-+|.. --||+.|..|.+.||.= .
T Consensus 44 F~sFd~FR~afW~~Va~DpeL~~QF~~~N~~rm-k~G~AP~a~~~e~~G~r----------~kfElHH~~~I~~GG~VYd 112 (130)
T d2gykb1 44 FKSFDDFRKAVWEEVSKDPELSKNLNPSNKSSV-SKGYSPFTPKNQQVGGR----------KVYELHHDKPISQGGEVYD 112 (130)
T ss_dssp ESSHHHHHHHHHHHHHHCTTTGGGSCHHHHHHH-HTTCCCBCCGGGCBTTB----------CBCEEEESSCGGGTCCSSB
T ss_pred cCCHHHHHHHHHHHHhcCHHHHHHhCHHHHHHH-hCCCCCCCChhhhcCCe----------eEEEeccCcccccCCeeee
Confidence 34556788899975442 1 13555555566666653 25999999999998832 2
Q ss_pred ccchhhhh
Q 047330 141 PSNLRILQ 148 (721)
Q Consensus 141 ~sNLQiLQ 148 (721)
++||+|+-
T Consensus 113 iDNLrI~T 120 (130)
T d2gykb1 113 MDNIRVTT 120 (130)
T ss_dssp GGGEEEEC
T ss_pred ccceeecC
Confidence 99999873
No 3
>d1bjta_ e.11.1.1 (A:) DNA topoisomerase II, C-terminal fragment (residues 410-1202) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=20.95 E-value=59 Score=34.08 Aligned_cols=67 Identities=18% Similarity=0.233 Sum_probs=42.5
Q ss_pred CCCCCCCChHHHHHHhhhhHHhHHHHHHHHHHHHHhHHHHHHHHhccccccchHHHH---HHHHHHHHHHH
Q 047330 278 ETPDFVTNPYQAIVAARDSLKQREETQKMQMEIQKLNEEVTDMRRANDEEKLDIQDL---ELELIKRRRRA 345 (721)
Q Consensus 278 ~~pD~v~NPyqaIv~ARDslkqree~~~~q~e~~~l~~e~~~~k~~n~~er~~iq~l---e~~likrrrr~ 345 (721)
+.++...+=|.+|+--|=.-=-.|+..|.+.|+.+|..|+.+|+.+..++ +-..|| +..+.|-..+-
T Consensus 686 ~~~~~~~~~ydYLL~MrL~~LT~eei~kL~~E~~~l~~Ei~~L~~~t~~~-lW~~DL~~l~~~y~k~~~~~ 755 (760)
T d1bjta_ 686 NGPEELYGTYEYLLGMRIWSLTKERYQKLLKQKQEKETELENLLKLSAKD-IWNTDLKAFEVGYQEFLQRD 755 (760)
T ss_dssp ---CTTTCBSHHHHTSCGGGGSHHHHHHHHHHHHHHHHHHHHHHTSCHHH-HHHHHHHHHHHHHHHHHHHH
T ss_pred hccccchhHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHH-HHHHHHHHHHHHHHHHHHHh
Confidence 44555666788887443333346788889999999999999999876654 334444 44445544333
No 4
>d2zkmx3 b.55.1.1 (X:11-141) Phospholipase C-beta-2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=17.13 E-value=24 Score=29.35 Aligned_cols=42 Identities=26% Similarity=0.363 Sum_probs=27.6
Q ss_pred CCCCcccccCCCCEEeeccCCCCCceeecceeeecCCCCccc
Q 047330 99 FDPAVIRVDPYGNVLYYHADSASPLAWEIDHWFPCSRGGLTV 140 (721)
Q Consensus 99 ~DParwR~DAyGNVV~~had~~SpLgWEIDHIfP~SRGG~Tv 140 (721)
..|-.||+|++|..|+|.......-+-+|+.|-=.=-|-.+.
T Consensus 23 ~~~~~frlD~~g~~L~W~~~~k~~~~l~i~~I~evR~G~~~~ 64 (131)
T d2zkmx3 23 ASPVILRVDPKGYYLYWTYQSKEMEFLDITSIRDTRFGKFAK 64 (131)
T ss_dssp EEEEEEEECTTSCEEEEEETTSCEEEEEGGGEEEEEEGGGSC
T ss_pred cceEEEEECCCCCEEEEECCCCceeEEEecceeeEEeccccC
Confidence 346889999999999995422222456777775544454443
No 5
>d2b5id1 g.18.1.1 (D:1-64) Interleukin-2 receptor alpha chain {Human (Homo sapiens) [TaxId: 9606]}
Probab=14.41 E-value=22 Score=27.90 Aligned_cols=14 Identities=50% Similarity=0.629 Sum_probs=11.3
Q ss_pred cccccccccCCC-Ch
Q 047330 685 SESARAFHRIPS-SP 698 (721)
Q Consensus 685 SeSaR~fr~iPS-SP 698 (721)
=|--|+||||+| ||
T Consensus 28 CeCkrGFRRi~~gs~ 42 (64)
T d2b5id1 28 CECKRGFRRIKSGSL 42 (64)
T ss_dssp CCCCTTEEECTTCCS
T ss_pred ecccccceecCCCCe
Confidence 466799999999 55
No 6
>d1b0na1 a.34.1.1 (A:74-108) SinR repressor dimerisation domain {Bacillus subtilis [TaxId: 1423]}
Probab=14.08 E-value=33 Score=24.19 Aligned_cols=18 Identities=50% Similarity=0.713 Sum_probs=14.0
Q ss_pred HHHHHHhhhhchhhHHHHh
Q 047330 363 EKMIRDAMHQSVIYKEQVR 381 (721)
Q Consensus 363 ekmirdamhqsv~ykeq~r 381 (721)
+++++|||.- -|-|||.|
T Consensus 6 ~~lVkeAM~S-GvSK~QFr 23 (35)
T d1b0na1 6 EKLVRDAMTS-GVSKKQFR 23 (35)
T ss_dssp HHHHHHHHHS-CCCHHHHH
T ss_pred HHHHHHHHHc-cCCHHHHH
Confidence 5789999984 45688877
No 7
>d1bvyf_ c.23.5.1 (F:) FMN-binding domain of the cytochrome P450bm-3 {Bacillus megaterium [TaxId: 1404]}
Probab=13.64 E-value=68 Score=26.43 Aligned_cols=26 Identities=15% Similarity=0.042 Sum_probs=18.7
Q ss_pred CCCCCChHHHHHHHHHhhcccCCCCCCCC
Q 047330 74 AKPTAKPKIFLSLLWKQLNHLGNAGFDPA 102 (721)
Q Consensus 74 ~~~~~nPr~F~~~~W~qldhlgnaG~DPa 102 (721)
+..+-|...+++.+.++|... |+.+.
T Consensus 9 gS~tGnae~~A~~l~~~l~~~---g~~~~ 34 (152)
T d1bvyf_ 9 GSNMGTAEGTARDLADIAMSK---GFAPQ 34 (152)
T ss_dssp ECSSSHHHHHHHHHHHHHHTT---TCCCE
T ss_pred ECCchHHHHHHHHHHHHHHhC---CCCce
Confidence 344567888999999888774 66553
No 8
>d2oeea1 a.281.1.2 (A:3-112) Hypothetical protein YheA {Bacillus subtilis [TaxId: 1423]}
Probab=11.98 E-value=2.3e+02 Score=21.87 Aligned_cols=78 Identities=17% Similarity=0.250 Sum_probs=49.9
Q ss_pred CChHHHHHHhhhhHHhHHHHHHHHHHHHHhHHHHHHHHhccc----cccchHHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Q 047330 284 TNPYQAIVAARDSLKQREETQKMQMEIQKLNEEVTDMRRAND----EEKLDIQDLELELIKRRRRAEKCRQLAEAQSSYR 359 (721)
Q Consensus 284 ~NPyqaIv~ARDslkqree~~~~q~e~~~l~~e~~~~k~~n~----~er~~iq~le~~likrrrr~ekcrrlaeaqssyr 359 (721)
|..|++...|..-++.=++++++=.+..++..++...++.-. ++.-.++.|...|. .-+..+.+-+||-.+-
T Consensus 17 s~ey~~~~~a~~~i~~d~~a~~li~~f~~~q~~~q~~q~~G~~~~~e~~~~l~~~~~~l~----~n~~v~~~~~Ae~~l~ 92 (110)
T d2oeea1 17 SEEFTRLKNLYDEVNADESAKRMFENFRDVQLRLQQKQMAGEEITQEEVTQAQKTVALVQ----QHEKISQLMEAEQRMS 92 (110)
T ss_dssp SHHHHHHHHHHHHHHHSHHHHHHHHHHHHHCC------------------CHHHHHHHHH----TSHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHh----cCHHHHHHHHHHHHHH
Confidence 567999999999999999999999999999888887665442 33334455544443 3467788888888887
Q ss_pred HHHHHH
Q 047330 360 TMLEKM 365 (721)
Q Consensus 360 ~~lekm 365 (721)
.+|..+
T Consensus 93 ~ll~~V 98 (110)
T d2oeea1 93 MLIGEL 98 (110)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 777654
No 9
>d1m7xa3 c.1.8.1 (A:227-622) 1,4-alpha-glucan branching enzyme, central domain {Escherichia coli [TaxId: 562]}
Probab=11.07 E-value=30 Score=29.66 Aligned_cols=25 Identities=16% Similarity=0.250 Sum_probs=21.2
Q ss_pred cccccCCCChhhhHHhhhccCCCCc
Q 047330 12 MAVDEGLGYPKAYAKICRDRSASGV 36 (721)
Q Consensus 12 ~~vd~~lGyP~ayaklCr~~~~~g~ 36 (721)
.+|||.+|=+..+.+||+.++..|+
T Consensus 80 ~~vdp~~Gt~~d~~~LV~~aH~~gi 104 (396)
T d1m7xa3 80 YAPTRRFGTRDDFRYFIDAAHAAGL 104 (396)
T ss_dssp EEECGGGSCHHHHHHHHHHHHHTTC
T ss_pred CCcCcccCCHHHHHHHHHHHhhhhh
Confidence 5799999999999999888665555
No 10
>d1p3da2 c.59.1.1 (A:322-473) UDP-N-acetylmuramate-alanine ligase MurC {Haemophilus influenzae [TaxId: 727]}
Probab=10.29 E-value=61 Score=25.07 Aligned_cols=16 Identities=31% Similarity=0.478 Sum_probs=14.3
Q ss_pred cCCCcHHHHHHHHHhh
Q 047330 562 RGKGNVERWLQMLLEN 577 (721)
Q Consensus 562 rGKGNVekWLqmLlEn 577 (721)
-|.||+.+|.+.|+|.
T Consensus 136 mGaGdi~~i~~~l~e~ 151 (152)
T d1p3da2 136 QGAGSVSKISRGLAES 151 (152)
T ss_dssp ECSSTHHHHHHHHHHH
T ss_pred EcCCCHHHHHHHHHhc
Confidence 4899999999999985
Done!