BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 047331
         (102 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3NBN|A Chain A, Crystal Structure Of A Dimer Of Notch Transcription
          Complex Trimers On Hes1 Dna
 pdb|3NBN|D Chain D, Crystal Structure Of A Dimer Of Notch Transcription
          Complex Trimers On Hes1 Dna
          Length = 433

 Score = 27.7 bits (60), Expect = 2.0,   Method: Composition-based stats.
 Identities = 14/33 (42%), Positives = 20/33 (60%), Gaps = 1/33 (3%)

Query: 66 PPPSEADREAAKLFVKEKG-EGVAKLKSKKASK 97
          PPP    REA + ++KE+G + V  L +K A K
Sbjct: 5  PPPKRLTREAMRNYLKERGDQTVLILHAKVAQK 37


>pdb|2F8X|C Chain C, Crystal Structure Of Activated Notch, Csl And Maml On
          Hes-1 Promoter Dna Sequence
 pdb|3V79|C Chain C, Structure Of Human Notch1 Transcription Complex
          Including Csl, Ram, Ank, And Maml-1 On Hes-1 Promoter
          Dna Sequence
          Length = 434

 Score = 27.7 bits (60), Expect = 2.0,   Method: Composition-based stats.
 Identities = 14/33 (42%), Positives = 20/33 (60%), Gaps = 1/33 (3%)

Query: 66 PPPSEADREAAKLFVKEKG-EGVAKLKSKKASK 97
          PPP    REA + ++KE+G + V  L +K A K
Sbjct: 5  PPPKRLTREAMRNYLKERGDQTVLILHAKVAQK 37


>pdb|3MM1|A Chain A, Dye-Decolorizing Peroxidase (Dyp) D171n
 pdb|3MM3|A Chain A, Dye-Decolorizing Peroxidase (Dyp) D171n In Complex With
          Cyanide
          Length = 442

 Score = 26.6 bits (57), Expect = 3.4,   Method: Composition-based stats.
 Identities = 10/27 (37%), Positives = 17/27 (62%)

Query: 1  LAGWVKIGRKQDKDWLAFFEVNDGSCF 27
          + G + +G K+ K+   FF+VND + F
Sbjct: 11 IQGDILVGMKKQKERFVFFQVNDATSF 37


>pdb|2D3Q|A Chain A, Crystal Structure Of A Decolorizing Peroxidase (Dyp)
          That Catalyses The Biological Oxidation Of
          Anthraquinone Derivatives
 pdb|2D3Q|B Chain B, Crystal Structure Of A Decolorizing Peroxidase (Dyp)
          That Catalyses The Biological Oxidation Of
          Anthraquinone Derivatives
 pdb|3AFV|A Chain A, Dye-Decolorizing Peroxidase (Dyp) At 1.4 A Resolution
 pdb|3MM2|A Chain A, Dye-Decolorizing Peroxidase (Dyp) In Complex With
          Cyanide
 pdb|3VXI|A Chain A, Dye-Decolorizing Peroxidase (Dyp) Complex With Ascorbic
          Acid
 pdb|3VXJ|A Chain A, Dye-Decolorizing Peroxidase (Dyp) Complex With
          2,6-Dimethoxyphenol
          Length = 442

 Score = 26.6 bits (57), Expect = 3.4,   Method: Composition-based stats.
 Identities = 10/27 (37%), Positives = 17/27 (62%)

Query: 1  LAGWVKIGRKQDKDWLAFFEVNDGSCF 27
          + G + +G K+ K+   FF+VND + F
Sbjct: 11 IQGDILVGMKKQKERFVFFQVNDATSF 37


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.314    0.134    0.398 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,689,048
Number of Sequences: 62578
Number of extensions: 77816
Number of successful extensions: 130
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 124
Number of HSP's gapped (non-prelim): 6
length of query: 102
length of database: 14,973,337
effective HSP length: 67
effective length of query: 35
effective length of database: 10,780,611
effective search space: 377321385
effective search space used: 377321385
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 45 (21.9 bits)