Query 047331
Match_columns 102
No_of_seqs 136 out of 578
Neff 4.0
Searched_HMMs 29240
Date Mon Mar 25 17:40:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047331.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/047331hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1n9w_A Aspartyl-tRNA synthetas 98.2 1.4E-06 4.7E-11 71.1 5.0 50 1-54 18-67 (422)
2 3nem_A Aspartyl-tRNA synthetas 98.1 2E-06 6.9E-11 70.6 4.5 51 1-55 21-81 (438)
3 3m4p_A Ehasnrs, asparaginyl-tR 98.1 2.2E-06 7.5E-11 70.8 3.8 33 1-36 35-67 (456)
4 2xgt_A Asparaginyl-tRNA synthe 98.0 2.7E-06 9.1E-11 69.5 3.7 49 1-52 16-71 (435)
5 1x54_A Asparaginyl-tRNA synthe 98.0 1.7E-06 5.9E-11 70.7 2.4 31 1-35 21-51 (434)
6 1wyd_A Hypothetical aspartyl-t 98.0 1.9E-06 6.5E-11 70.5 2.4 32 1-36 21-52 (429)
7 3a74_A Lysyl-tRNA synthetase; 98.0 2.7E-06 9.3E-11 70.8 2.5 31 1-35 61-91 (493)
8 1e1o_A Lysyl-tRNA synthetase, 98.0 2.9E-06 9.8E-11 70.9 2.5 33 1-37 69-101 (504)
9 1c0a_A Aspartyl tRNA synthetas 97.9 3E-06 1E-10 71.7 2.5 31 1-35 20-50 (585)
10 4ex5_A Lysine--tRNA ligase; st 97.9 3.9E-06 1.3E-10 70.8 3.1 32 1-36 91-122 (529)
11 1eov_A ASPRS, aspartyl-tRNA sy 97.9 3.8E-06 1.3E-10 69.6 2.6 32 1-36 41-73 (487)
12 1l0w_A Aspartyl-tRNA synthetas 97.9 4E-06 1.4E-10 71.1 2.5 32 1-36 21-52 (580)
13 3i7f_A Aspartyl-tRNA synthetas 97.8 8.5E-06 2.9E-10 69.2 3.1 32 1-36 67-98 (548)
14 3bju_A Lysyl-tRNA synthetase; 97.8 1.2E-05 4.2E-10 67.3 3.2 35 1-38 60-94 (521)
15 4ah6_A Aspartate--tRNA ligase, 96.7 0.0015 5E-08 56.3 4.5 30 1-37 29-58 (617)
16 2djv_A Methionyl-tRNA syntheta 96.3 0.0041 1.4E-07 40.8 3.7 37 65-101 7-43 (79)
17 1fyj_A Multifunctional aminoac 95.1 0.021 7E-07 35.0 3.3 28 74-101 3-30 (57)
18 1d2d_A TRNA synthetase, tRNA l 92.7 0.069 2.4E-06 33.2 2.4 25 77-101 3-27 (59)
19 2zt5_A Glycyl-tRNA synthetase; 84.8 0.18 6.2E-06 43.5 0.0 33 69-101 6-38 (693)
20 3kdf_D Replication protein A 3 64.2 10 0.00034 25.4 4.3 30 2-34 37-66 (132)
21 4gop_B Putative uncharacterize 59.8 11 0.00039 25.3 4.0 29 2-34 42-70 (136)
22 1x59_A Histidyl-tRNA synthetas 45.8 23 0.0008 22.0 3.5 30 71-100 9-38 (73)
23 3lqc_A DNA repair protein XRCC 45.1 15 0.00051 27.6 2.8 41 16-58 55-100 (189)
24 3kf6_A Protein STN1; OB fold, 39.7 26 0.00088 24.9 3.3 32 1-35 52-83 (159)
25 1r6t_A Tryptophanyl-tRNA synth 37.6 24 0.00083 29.1 3.3 31 70-100 6-36 (477)
26 2yy0_A C-MYC-binding protein; 35.0 42 0.0014 20.0 3.2 26 67-92 15-40 (53)
27 1osy_A Immunomodulatory protei 34.7 21 0.00073 24.7 2.1 41 8-49 67-110 (115)
28 3csx_A Putative uncharacterize 28.9 20 0.0007 23.6 1.2 28 64-91 8-35 (81)
29 1p6v_A SSRA-binding protein; S 26.9 8.8 0.0003 28.1 -1.0 26 2-27 32-60 (156)
30 2pi2_A Replication protein A 3 25.4 73 0.0025 23.7 3.9 23 2-26 77-99 (270)
31 1zvz_B Talin 1, metavinculin; 23.2 86 0.0029 16.1 2.8 20 73-92 4-23 (26)
32 3kf8_A Protein STN1; OB fold; 22.9 1.6E+02 0.0055 22.2 5.3 40 15-54 110-159 (220)
33 2kvc_A Putative uncharacterize 22.2 50 0.0017 22.5 2.2 21 64-84 70-90 (103)
No 1
>1n9w_A Aspartyl-tRNA synthetase 2; biosynthetic protein; 2.30A {Thermus thermophilus} SCOP: b.40.4.1 d.104.1.1 PDB: 3kfu_A*
Probab=98.19 E-value=1.4e-06 Score=71.14 Aligned_cols=50 Identities=22% Similarity=0.261 Sum_probs=37.4
Q ss_pred CceeEeceecCCCCeeEEEEEeCCCCCCceeEEEecCCCCCCCceeEeeehhhh
Q 047331 1 LAGWVKIGRKQDKDWLAFFEVNDGSCFDNLQVLVERNGCGGAGEMFQVTTLLSE 54 (102)
Q Consensus 1 v~GWVks~R~~k~g~~~Fl~lnDGS~~~~LQvVv~~sdcEGage~fqVTTLl~k 54 (102)
|.|||+++|.+| ++.|++|+|||+. +|||++.....+-|+...|+-.+.+
T Consensus 18 v~Gwv~~~R~~g--~~~F~~lrD~~g~--iQ~v~~~~~l~~~~~~v~v~G~v~~ 67 (422)
T 1n9w_A 18 LLGFLHWRRDLG--RIQFLLLRDRSGV--VQVVTGGLKLPLPESALRVRGLVVE 67 (422)
T ss_dssp EEEEEEEEEECS--SEEEEEEEETTEE--EEEEEESCCCCCTTCEEEEEEEEEE
T ss_pred EEEEEEEEecCC--CeEEEEEEECCEE--EEEEEEccccCCCCCEEEEEEEEEe
Confidence 579999999998 8999999999998 9999964222224555555544433
No 2
>3nem_A Aspartyl-tRNA synthetase; rossmann fold, OB fold, ligase; HET: AMO ATP; 1.89A {Thermococcus kodakarensis} PDB: 3nel_A* 3nen_A 1b8a_A*
Probab=98.12 E-value=2e-06 Score=70.64 Aligned_cols=51 Identities=16% Similarity=0.270 Sum_probs=39.1
Q ss_pred CceeEeceecCCCCeeEEEEEeCCCCCCceeEEEecCCC----------CCCCceeEeeehhhhh
Q 047331 1 LAGWVKIGRKQDKDWLAFFEVNDGSCFDNLQVLVERNGC----------GGAGEMFQVTTLLSEA 55 (102)
Q Consensus 1 v~GWVks~R~~k~g~~~Fl~lnDGS~~~~LQvVv~~sdc----------EGage~fqVTTLl~ka 55 (102)
|.|||+++|.+| +++|++|+|||+. +|||++...+ -..|+...|+-.+.+.
T Consensus 21 v~Gwv~~~R~~g--~~~Fi~LrD~~g~--iQ~v~~~~~~~~~~~~~~~~l~~~~~V~V~G~v~~~ 81 (438)
T 3nem_A 21 VAGWVWEVKDLG--GIKFLWIRDRDGI--VQITAPKKKVDPELFKLIPKLRSEDVVAVEGVVNFT 81 (438)
T ss_dssp EEEEEEEEEEET--TEEEEEEEETTEE--EEEEEETTTSCHHHHHHGGGCCTTCEEEEEEEEEEC
T ss_pred EEEEEEEEecCC--CeEEEEEEECCee--EEEEEeCCcCCHHHHHHHhcCCCCCEEEEEEEEEeC
Confidence 579999999999 8999999999997 9999985332 2336666666554443
No 3
>3m4p_A Ehasnrs, asparaginyl-tRNA synthetase, putative; aminoacyl-tRNA synthetase, tRNA ligase, AARS, translation, ATP-binding, nucleotide-binding; HET: 4AD; 2.83A {Entamoeba histolytica} PDB: 3m4q_A
Probab=98.06 E-value=2.2e-06 Score=70.76 Aligned_cols=33 Identities=36% Similarity=0.552 Sum_probs=29.3
Q ss_pred CceeEeceecCCCCeeEEEEEeCCCCCCceeEEEec
Q 047331 1 LAGWVKIGRKQDKDWLAFFEVNDGSCFDNLQVLVER 36 (102)
Q Consensus 1 v~GWVks~R~~k~g~~~Fl~lnDGS~~~~LQvVv~~ 36 (102)
|.|||+++|.+|| +++|++|+|||+. +|||++.
T Consensus 35 v~Gwv~~~R~~Gk-~~~Fi~LrD~sg~--iQvv~~~ 67 (456)
T 3m4p_A 35 FKGWAYHIRKARK-TLIFVELRDGSGY--CQCVIFG 67 (456)
T ss_dssp EEEEEEEEECCSS-SEEEEEEECSSCE--EEEEEES
T ss_pred EEEEEEEEecCCC-ceEEEEEEeCCcc--EEEEEec
Confidence 5799999999963 4999999999986 9999974
No 4
>2xgt_A Asparaginyl-tRNA synthetase, cytoplasmic; ligase, ATP-binding, protein biosynthesis; HET: NSS; 1.90A {Brugia malayi} PDB: 2xti_A*
Probab=98.03 E-value=2.7e-06 Score=69.50 Aligned_cols=49 Identities=33% Similarity=0.587 Sum_probs=36.4
Q ss_pred CceeEeceecCCCCeeEEEEEeCCCCCCceeEEEecCCCC-------CCCceeEeeehh
Q 047331 1 LAGWVKIGRKQDKDWLAFFEVNDGSCFDNLQVLVERNGCG-------GAGEMFQVTTLL 52 (102)
Q Consensus 1 v~GWVks~R~~k~g~~~Fl~lnDGS~~~~LQvVv~~sdcE-------Gage~fqVTTLl 52 (102)
|.|||+++|.+|| ++.|++|+|||+. +|||++...++ ..|+...|+-.+
T Consensus 16 v~Gwv~~~R~~Gk-~~~Fi~LrD~~g~--iQvv~~~~~~~~~~~~~l~~~~~v~v~G~v 71 (435)
T 2xgt_A 16 IKGWIHRMRRQGK-SLMFFILRDGTGF--LQVLLMDKLCQTYDALTVNTECTVEIYGAI 71 (435)
T ss_dssp EEEEEEEEEECTT-SEEEEEEECSSCE--EEEEEEGGGGSSHHHHHCCTTCEEEEEEEE
T ss_pred EEEEEEEecccCC-CcEEEEEEECCce--EEEEECCcchhHHHHhcCCCCCEEEEEEEE
Confidence 5799999999953 4999999999997 99999732222 225566665444
No 5
>1x54_A Asparaginyl-tRNA synthetase; aminoacyl-tRNA synthetase, riken structural genomics/proteom initiative, RSGI, structural genomics, ligase; HET: 4AD; 1.45A {Pyrococcus horikoshii} PDB: 1x55_A* 1x56_A
Probab=98.02 E-value=1.7e-06 Score=70.70 Aligned_cols=31 Identities=29% Similarity=0.485 Sum_probs=29.2
Q ss_pred CceeEeceecCCCCeeEEEEEeCCCCCCceeEEEe
Q 047331 1 LAGWVKIGRKQDKDWLAFFEVNDGSCFDNLQVLVE 35 (102)
Q Consensus 1 v~GWVks~R~~k~g~~~Fl~lnDGS~~~~LQvVv~ 35 (102)
|.|||+++|.+| ++.|++|+|||+. +|||++
T Consensus 21 v~G~v~~~R~~g--~~~F~~lrD~~g~--iQ~v~~ 51 (434)
T 1x54_A 21 LAGWVYTNMRVG--KKIFLWIRDSTGI--VQAVVA 51 (434)
T ss_dssp EEEEEEEEEEET--TEEEEEEEETTEE--EEEEEC
T ss_pred EEEEEEEEecCC--CeEEEEEEECCEE--EEEEEE
Confidence 579999999999 8999999999998 999996
No 6
>1wyd_A Hypothetical aspartyl-tRNA synthetase; archaea, LIGA; HET: EPE; 2.30A {Sulfolobus tokodaii}
Probab=98.01 E-value=1.9e-06 Score=70.47 Aligned_cols=32 Identities=31% Similarity=0.489 Sum_probs=29.6
Q ss_pred CceeEeceecCCCCeeEEEEEeCCCCCCceeEEEec
Q 047331 1 LAGWVKIGRKQDKDWLAFFEVNDGSCFDNLQVLVER 36 (102)
Q Consensus 1 v~GWVks~R~~k~g~~~Fl~lnDGS~~~~LQvVv~~ 36 (102)
|.|||+++|.+| ++.|++|+|||+. +|||++.
T Consensus 21 v~Gwv~~~R~~g--~~~F~~lrD~~g~--iQ~v~~~ 52 (429)
T 1wyd_A 21 WAGWVHLLRDLG--GKKFIILRDKTGL--GQVVVDK 52 (429)
T ss_dssp EEEEEEEEEEET--TEEEEEEEETTEE--EEEEECT
T ss_pred EEEEEEEEecCC--CeEEEEEEECCee--EEEEEeC
Confidence 579999999999 8999999999998 9999963
No 7
>3a74_A Lysyl-tRNA synthetase; aminoacyl tRNA synthetase, ligase, protein biosynthesis, AMI tRNA synthetase, ATP-binding, magnesium; HET: B4P LYN; 1.80A {Geobacillus stearothermophilus} PDB: 3e9h_A* 3e9i_A*
Probab=97.96 E-value=2.7e-06 Score=70.81 Aligned_cols=31 Identities=23% Similarity=0.295 Sum_probs=28.9
Q ss_pred CceeEeceecCCCCeeEEEEEeCCCCCCceeEEEe
Q 047331 1 LAGWVKIGRKQDKDWLAFFEVNDGSCFDNLQVLVE 35 (102)
Q Consensus 1 v~GWVks~R~~k~g~~~Fl~lnDGS~~~~LQvVv~ 35 (102)
|.|||+++|.+| +++|++|+|||+. ||||++
T Consensus 61 v~Gwv~~~R~~g--k~~F~~LrD~sg~--iQvv~~ 91 (493)
T 3a74_A 61 VAGRIMTKRGMG--KAGFAHIQDVTGQ--IQIYVR 91 (493)
T ss_dssp EEEEEEEEEEET--TEEEEEEEETTEE--EEEEEE
T ss_pred EEEEEEEEecCC--CcEEEEEEECCEe--EEEEEE
Confidence 579999999999 8999999999984 999996
No 8
>1e1o_A Lysyl-tRNA synthetase, heat inducible; ligase, aminoacyl-tRNA synthetase, protein biosynthesis; HET: LYS; 2.12A {Escherichia coli} SCOP: b.40.4.1 d.104.1.1 PDB: 1e1t_A* 1e22_A* 1e24_A* 1lyl_A 1bbu_A* 1bbw_A 1krs_A 1krt_A
Probab=97.95 E-value=2.9e-06 Score=70.92 Aligned_cols=33 Identities=24% Similarity=0.301 Sum_probs=29.9
Q ss_pred CceeEeceecCCCCeeEEEEEeCCCCCCceeEEEecC
Q 047331 1 LAGWVKIGRKQDKDWLAFFEVNDGSCFDNLQVLVERN 37 (102)
Q Consensus 1 v~GWVks~R~~k~g~~~Fl~lnDGS~~~~LQvVv~~s 37 (102)
|.|||+++|.+| +++|++|+|||+. ||||++..
T Consensus 69 v~Gwv~~~R~~g--k~~F~~LrD~sg~--iQvv~~~~ 101 (504)
T 1e1o_A 69 VAGRMMTRRIMG--KASFVTLQDVGGR--IQLYVARD 101 (504)
T ss_dssp EEEEEEEEEEET--TEEEEEEEETTEE--EEEEEETT
T ss_pred EEEEEEEEecCC--CcEEEEEEECCee--EEEEEECC
Confidence 579999999999 8999999999985 99999753
No 9
>1c0a_A Aspartyl tRNA synthetase; protein-RNA complex, ligase/RNA complex; HET: 4SU H2U QUO G7M 5MU PSU AMP AMO; 2.40A {Escherichia coli} SCOP: b.40.4.1 d.74.4.1 d.104.1.1 PDB: 1il2_A* 1eqr_A*
Probab=97.94 E-value=3e-06 Score=71.73 Aligned_cols=31 Identities=32% Similarity=0.623 Sum_probs=29.1
Q ss_pred CceeEeceecCCCCeeEEEEEeCCCCCCceeEEEe
Q 047331 1 LAGWVKIGRKQDKDWLAFFEVNDGSCFDNLQVLVE 35 (102)
Q Consensus 1 v~GWVks~R~~k~g~~~Fl~lnDGS~~~~LQvVv~ 35 (102)
|.|||+++|.+| ++.|++|+|||+. +|||++
T Consensus 20 l~GwV~~~R~~G--~~~Fi~LrD~~g~--iQvv~~ 50 (585)
T 1c0a_A 20 LCGWVNRRRDLG--SLIFIDMRDREGI--VQVFFD 50 (585)
T ss_dssp EEEEEEEEEECS--SCEEEEEEETTEE--EEEEEC
T ss_pred EEEEEEEEecCC--CcEEEEEEECCee--EEEEEe
Confidence 579999999999 8999999999997 999996
No 10
>4ex5_A Lysine--tRNA ligase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: LYS; 2.40A {Burkholderia thailandensis}
Probab=97.94 E-value=3.9e-06 Score=70.84 Aligned_cols=32 Identities=31% Similarity=0.434 Sum_probs=29.3
Q ss_pred CceeEeceecCCCCeeEEEEEeCCCCCCceeEEEec
Q 047331 1 LAGWVKIGRKQDKDWLAFFEVNDGSCFDNLQVLVER 36 (102)
Q Consensus 1 v~GWVks~R~~k~g~~~Fl~lnDGS~~~~LQvVv~~ 36 (102)
|.|||+++|.+| +++|++|+|||+ .||||++.
T Consensus 91 v~GwV~~~R~~G--k~~Fi~LrD~sg--~iQvv~~~ 122 (529)
T 4ex5_A 91 IAGRMMLKRVMG--KASFATVQDGSG--QIQFFVTP 122 (529)
T ss_dssp EEEEEEEEEEET--TEEEEEEECSSC--EEEEEECH
T ss_pred EEEEEEeeecCC--CeEEEEEEeCCe--eEEEEEEC
Confidence 579999999999 899999999997 59999974
No 11
>1eov_A ASPRS, aspartyl-tRNA synthetase; aminoacyl tRNA synthetase, tRNA ligase, APO-enzyme, OB-fold,; 2.30A {Saccharomyces cerevisiae} SCOP: b.40.4.1 d.104.1.1 PDB: 1asy_A* 1asz_A*
Probab=97.92 E-value=3.8e-06 Score=69.63 Aligned_cols=32 Identities=25% Similarity=0.326 Sum_probs=28.9
Q ss_pred CceeEeceecCCCCee-EEEEEeCCCCCCceeEEEec
Q 047331 1 LAGWVKIGRKQDKDWL-AFFEVNDGSCFDNLQVLVER 36 (102)
Q Consensus 1 v~GWVks~R~~k~g~~-~Fl~lnDGS~~~~LQvVv~~ 36 (102)
|.|||+++|.+| ++ .|++|+|||+. +|||++.
T Consensus 41 v~GwV~~~R~~g--~~l~Fi~LrD~~g~--iQvv~~~ 73 (487)
T 1eov_A 41 FRARVHNTRQQG--ATLAFLTLRQQASL--IQGLVKA 73 (487)
T ss_dssp EEEEEEEEEECS--SSEEEEEEEETTEE--EEEEEEC
T ss_pred EEEEEEEeeccC--CccEEEEEEECCcc--EEEEEec
Confidence 579999999999 76 99999999985 9999974
No 12
>1l0w_A Aspartyl-tRNA synthetase; space-grown crystal, dimeric enzyme, flexible domains, ligase; 2.01A {Thermus thermophilus} SCOP: b.40.4.1 d.74.4.1 d.104.1.1 PDB: 1efw_A* 1g51_A
Probab=97.90 E-value=4e-06 Score=71.14 Aligned_cols=32 Identities=28% Similarity=0.562 Sum_probs=29.4
Q ss_pred CceeEeceecCCCCeeEEEEEeCCCCCCceeEEEec
Q 047331 1 LAGWVKIGRKQDKDWLAFFEVNDGSCFDNLQVLVER 36 (102)
Q Consensus 1 v~GWVks~R~~k~g~~~Fl~lnDGS~~~~LQvVv~~ 36 (102)
|.|||+++|.+| ++.|++|+|||+. +|||++.
T Consensus 21 l~GwV~~~R~~G--~~~Fi~LrD~~g~--iQvv~~~ 52 (580)
T 1l0w_A 21 LEGWVNRRRDLG--GLIFLDLRDREGL--VQLVAHP 52 (580)
T ss_dssp EEEEEEEEEECS--SCEEEEEEETTEE--EEEEECT
T ss_pred EEEEEEEEecCC--CeEEEEEEECCee--EEEEEeC
Confidence 579999999999 8999999999997 9999963
No 13
>3i7f_A Aspartyl-tRNA synthetase; tRNA ligase, APO, ATP-binding, aminoacyl-tRNA synthetase, LI nucleotide-binding, protein biosynthesis; 2.80A {Entamoeba histolytica}
Probab=97.81 E-value=8.5e-06 Score=69.18 Aligned_cols=32 Identities=22% Similarity=0.296 Sum_probs=29.3
Q ss_pred CceeEeceecCCCCeeEEEEEeCCCCCCceeEEEec
Q 047331 1 LAGWVKIGRKQDKDWLAFFEVNDGSCFDNLQVLVER 36 (102)
Q Consensus 1 v~GWVks~R~~k~g~~~Fl~lnDGS~~~~LQvVv~~ 36 (102)
|+|||+++|.+| +++|++|+|||+ .||+|++.
T Consensus 67 v~Gwv~~~R~~g--kl~Fi~LrD~~g--~iQ~v~~~ 98 (548)
T 3i7f_A 67 IRARVQAVRGKG--NMVFLFLRKGIY--TCQALVMK 98 (548)
T ss_dssp EEEEEEEEEECS--SEEEEEEEETTE--EEEEEEEC
T ss_pred EEEEEEEEecCC--CeEEEEEEECCe--eEEEEEEC
Confidence 579999999999 899999999998 59999973
No 14
>3bju_A Lysyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP- binding, cytoplasm, ligase, nucleotide-binding, phosphoprotein, polymorphism; HET: LYS ATP; 2.31A {Homo sapiens}
Probab=97.76 E-value=1.2e-05 Score=67.28 Aligned_cols=35 Identities=23% Similarity=0.439 Sum_probs=29.8
Q ss_pred CceeEeceecCCCCeeEEEEEeCCCCCCceeEEEecCC
Q 047331 1 LAGWVKIGRKQDKDWLAFFEVNDGSCFDNLQVLVERNG 38 (102)
Q Consensus 1 v~GWVks~R~~k~g~~~Fl~lnDGS~~~~LQvVv~~sd 38 (102)
|.|||+++|.+|+ +++|++|+|||+ .||||++..+
T Consensus 60 v~Grv~~~R~~gk-k~~F~~LrD~sg--~iQvv~~~~~ 94 (521)
T 3bju_A 60 VAGRIHAKRASGG-KLIFYDLRGEGV--KLQVMANSRN 94 (521)
T ss_dssp EEEEEEEEEESSS-SEEEEEEEETTE--EEEEEEEGGG
T ss_pred EEEEEEEEecCCC-CcEEEEEEECCE--EEEEEEECCc
Confidence 5799999999975 499999999996 4999997543
No 15
>4ah6_A Aspartate--tRNA ligase, mitochondrial; 3.70A {Homo sapiens}
Probab=96.68 E-value=0.0015 Score=56.28 Aligned_cols=30 Identities=27% Similarity=0.688 Sum_probs=25.3
Q ss_pred CceeEeceecCCCCeeEEEEEeCCCCCCceeEEEecC
Q 047331 1 LAGWVKIGRKQDKDWLAFFEVNDGSCFDNLQVLVERN 37 (102)
Q Consensus 1 v~GWVks~R~~k~g~~~Fl~lnDGS~~~~LQvVv~~s 37 (102)
|.|||+++|.+ .||+|+|||+. +|||++..
T Consensus 29 l~GwV~~~R~~-----~Fi~LrD~~g~--iQvv~~~~ 58 (617)
T 4ah6_A 29 LCGWIQYRRQN-----TFLVLRDFDGL--VQVIIPQD 58 (617)
T ss_dssp EEEEECCCCTT-----TEEEEECSSCE--EEEECCCS
T ss_pred EEEEeeeecCe-----EEEEEEeCCcC--EEEEEeCC
Confidence 57999999964 49999999975 99999743
No 16
>2djv_A Methionyl-tRNA synthetase; EC 6.1.1.10, WHEP-TRS domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.26 E-value=0.0041 Score=40.81 Aligned_cols=37 Identities=24% Similarity=0.221 Sum_probs=33.0
Q ss_pred CCCCChhhHHHHHHHHHHhhHHHHHhhhchhhhhhhh
Q 047331 65 NPPPSEADREAAKLFVKEKGEGVAKLKSKKASKEVLL 101 (102)
Q Consensus 65 ~~~~~~~~iea~ka~v~ekg~~V~~lK~~~s~ke~~~ 101 (102)
++++...+++++++.|.++|+.|..||.+++.+.+|.
T Consensus 7 ~~~~~~~~~~~l~~~V~~QG~~VR~LKa~kA~k~~i~ 43 (79)
T 2djv_A 7 GTTAKPQQIQALMDEVTKQGNIVRELKAQKADKNEVA 43 (79)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHH
T ss_pred CCCcchHHHHHHHHHHHHHHHHHHHHhhccCcHhHhh
Confidence 5778889999999999999999999999988887663
No 17
>1fyj_A Multifunctional aminoacyl-tRNA synthetase; helix-turn-helix, ligase; NMR {Homo sapiens} SCOP: a.16.1.3
Probab=95.06 E-value=0.021 Score=34.97 Aligned_cols=28 Identities=36% Similarity=0.235 Sum_probs=25.2
Q ss_pred HHHHHHHHHhhHHHHHhhhchhhhhhhh
Q 047331 74 EAAKLFVKEKGEGVAKLKSKKASKEVLL 101 (102)
Q Consensus 74 ea~ka~v~ekg~~V~~lK~~~s~ke~~~ 101 (102)
++.++.|+++|+.|..||.+++.+++|.
T Consensus 3 ~~l~~~v~~qG~~VR~LKa~kA~k~~i~ 30 (57)
T 1fyj_A 3 LVLYNRVAVQGDVVRELKAKKAPKEDVD 30 (57)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCCHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhcCCCHHHHH
Confidence 6788999999999999999999988764
No 18
>1d2d_A TRNA synthetase, tRNA ligase; tRNA synthetase (ligase), protein transcription; NMR {Cricetulus griseus} SCOP: a.16.1.3 PDB: 1r1b_A
Probab=92.67 E-value=0.069 Score=33.21 Aligned_cols=25 Identities=36% Similarity=0.337 Sum_probs=21.7
Q ss_pred HHHHHHhhHHHHHhhhchhhhhhhh
Q 047331 77 KLFVKEKGEGVAKLKSKKASKEVLL 101 (102)
Q Consensus 77 ka~v~ekg~~V~~lK~~~s~ke~~~ 101 (102)
.+.|+++|+.|..||++++++++|.
T Consensus 3 ~~~V~~QG~~VR~LKa~kA~k~~i~ 27 (59)
T 1d2d_A 3 YDKIAAQGEVVRKLKAEKAPKAKVT 27 (59)
T ss_dssp CHHHHHHHHHHHHHHHTCCCHHHHH
T ss_pred HHHHHHhHHHHHHHhhcCCCHHHHH
Confidence 3678999999999999999988764
No 19
>2zt5_A Glycyl-tRNA synthetase; ligase, AP4A, glycine, ATP, Gly-AMP, aminoacyl-tRNA synthetase, ATP-binding, charcot-marie-tooth disease, disease mutation; HET: B4P; 2.50A {Homo sapiens} PDB: 2pme_A* 2zt6_A* 2zt7_A* 2zt8_A* 2zxf_A* 2pmf_A 2q5h_A 2q5i_A
Probab=84.79 E-value=0.18 Score=43.47 Aligned_cols=33 Identities=30% Similarity=0.322 Sum_probs=0.0
Q ss_pred ChhhHHHHHHHHHHhhHHHHHhhhchhhhhhhh
Q 047331 69 SEADREAAKLFVKEKGEGVAKLKSKKASKEVLL 101 (102)
Q Consensus 69 ~~~~iea~ka~v~ekg~~V~~lK~~~s~ke~~~ 101 (102)
-+.+|+++++.|+++|+.|.+||++++++++|.
T Consensus 6 ~~~~l~~~~~~v~~~~~~vr~lk~~~a~~~~i~ 38 (693)
T 2zt5_A 6 AEEVLAPLRLAVRQQGDLVRKLKEDKAPQVDVD 38 (693)
T ss_dssp ---------------------------------
T ss_pred HHHHHHHHHHHHHHhhHHHHHHhhcCCCHHHHH
Confidence 367889999999999999999999999987754
No 20
>3kdf_D Replication protein A 32 kDa subunit; wheat GERM cell free, protein complex, center for eukaryotic structural genomics, PSI; HET: MSE; 1.98A {Homo sapiens} SCOP: b.40.4.3 PDB: 2pqa_A 1quq_A 1l1o_B
Probab=64.20 E-value=10 Score=25.44 Aligned_cols=30 Identities=13% Similarity=0.219 Sum_probs=24.0
Q ss_pred ceeEeceecCCCCeeEEEEEeCCCCCCceeEEE
Q 047331 2 AGWVKIGRKQDKDWLAFFEVNDGSCFDNLQVLV 34 (102)
Q Consensus 2 ~GWVks~R~~k~g~~~Fl~lnDGS~~~~LQvVv 34 (102)
-|+|++++... ...-+.|.|||.. .+.+..
T Consensus 37 VG~V~~~~~~~--~~~~~~ldD~TG~-~I~~~~ 66 (132)
T 3kdf_D 37 VGIIRHAEKAP--TNIVYKIDDMTAA-PMDVRQ 66 (132)
T ss_dssp EEEEEEEEECS--SEEEEEEECSSSS-CEEEEE
T ss_pred EEEEEEEEEcC--CeEEEEEECCCCC-EEEEEE
Confidence 59999999988 8889999999982 255544
No 21
>4gop_B Putative uncharacterized protein; OB fold, ssDNA binding, DNA binding protein-DNA complex; HET: DNA; 3.10A {Ustilago maydis}
Probab=59.77 E-value=11 Score=25.26 Aligned_cols=29 Identities=17% Similarity=0.152 Sum_probs=24.1
Q ss_pred ceeEeceecCCCCeeEEEEEeCCCCCCceeEEE
Q 047331 2 AGWVKIGRKQDKDWLAFFEVNDGSCFDNLQVLV 34 (102)
Q Consensus 2 ~GWVks~R~~k~g~~~Fl~lnDGS~~~~LQvVv 34 (102)
-|+|++++... ...-+.|.|||.. |.+..
T Consensus 42 VG~V~~~~~~~--~~~~~~ldD~TG~--I~~~~ 70 (136)
T 4gop_B 42 VAVVRNISRNA--TNVAYSVEDGTGQ--IEVRQ 70 (136)
T ss_dssp EEEEEEEEECS--SEEEEEEECSSCE--EEEEE
T ss_pred EEEEEEEEecC--CeEEEEEECCCCC--EEEEE
Confidence 59999999988 8888999999984 66544
No 22
>1x59_A Histidyl-tRNA synthetase; hisrs, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=45.80 E-value=23 Score=22.03 Aligned_cols=30 Identities=47% Similarity=0.579 Sum_probs=23.2
Q ss_pred hhHHHHHHHHHHhhHHHHHhhhchhhhhhh
Q 047331 71 ADREAAKLFVKEKGEGVAKLKSKKASKEVL 100 (102)
Q Consensus 71 ~~iea~ka~v~ekg~~V~~lK~~~s~ke~~ 100 (102)
.+.+...+.++.+|+.|..||..+.+.+.|
T Consensus 9 ~~~~~i~~~i~~qg~lvR~LK~~k~~~~~I 38 (73)
T 1x59_A 9 AERAALEELVKLQGERVRGLKQQKASAELI 38 (73)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTCCHHHH
T ss_pred cCHHHHHHHHHHHHHHHHHHHhccccHHHH
Confidence 456777999999999999998876655443
No 23
>3lqc_A DNA repair protein XRCC1; allosteric disulfide, scaffolding protein, DNA repair, DNA D nucleus, phosphoprotein, polymorphism, DNA replication; HET: DNA; 2.35A {Homo sapiens} PDB: 3k75_B* 1xna_A 1xnt_A 3k77_A*
Probab=45.05 E-value=15 Score=27.65 Aligned_cols=41 Identities=27% Similarity=0.487 Sum_probs=28.2
Q ss_pred eEEEEE-eCCCCCCceeEEEecCCCC----CCCceeEeeehhhhhHHH
Q 047331 16 LAFFEV-NDGSCFDNLQVLVERNGCG----GAGEMFQVTTLLSEAEKL 58 (102)
Q Consensus 16 ~~Fl~l-nDGS~~~~LQvVv~~sdcE----Gage~fqVTTLl~kae~~ 58 (102)
|.+|+| |-||++ |+|.|.||.|. .+=.++-.|++.+.+|-.
T Consensus 55 I~~IDIGN~gSAf--IEVlVgrS~~~~~~~~f~vLLptssFMsp~eSk 100 (189)
T 3lqc_A 55 IHSVDIGNDGSAF--VEVLVGSSAGGAGEQDYEVLLVTSSFMSPSESR 100 (189)
T ss_dssp CCEEEEEEEBCSE--EEEEEECCTTCCCGGGCEEEEEEEESCCHHHHH
T ss_pred eeEEeecCCceEE--EEEEeecccCCCCCCCceEEeeeccccChHHHh
Confidence 567777 678888 99999988662 222345556688888743
No 24
>3kf6_A Protein STN1; OB fold, chromosomal protein, DNA-binding, nucleus, telomere; 1.65A {Schizosaccharomyces pombe}
Probab=39.67 E-value=26 Score=24.93 Aligned_cols=32 Identities=19% Similarity=0.217 Sum_probs=25.4
Q ss_pred CceeEeceecCCCCeeEEEEEeCCCCCCceeEEEe
Q 047331 1 LAGWVKIGRKQDKDWLAFFEVNDGSCFDNLQVLVE 35 (102)
Q Consensus 1 v~GWVks~R~~k~g~~~Fl~lnDGS~~~~LQvVv~ 35 (102)
|-|-|.+++... +..+..|.|||.. ++.+++-
T Consensus 52 IvGiVv~~~~~~--~~~~ytIDD~TG~-~I~cv~w 83 (159)
T 3kf6_A 52 IVGYIAAIDIYE--GKHVLTVDDCSGM-VLRVVFI 83 (159)
T ss_dssp EEEEEEEEEEET--TEEEEEEECSSSC-EEEEEEE
T ss_pred EEEEEEEEEEeC--CEEEEEEecCCCC-eEEEEEE
Confidence 348899999888 8999999999975 3566664
No 25
>1r6t_A Tryptophanyl-tRNA synthetase; class IC tRNA synthetase, rossmann fold catalytical domain, recognition domain, bound Trp-AMP, ligase; HET: TYM; 2.10A {Homo sapiens} SCOP: a.16.1.3 c.26.1.1 PDB: 2azx_A* 2quh_A* 2qui_A* 2quj_A* 2quk_A
Probab=37.64 E-value=24 Score=29.07 Aligned_cols=31 Identities=29% Similarity=0.209 Sum_probs=25.5
Q ss_pred hhhHHHHHHHHHHhhHHHHHhhhchhhhhhh
Q 047331 70 EADREAAKLFVKEKGEGVAKLKSKKASKEVL 100 (102)
Q Consensus 70 ~~~iea~ka~v~ekg~~V~~lK~~~s~ke~~ 100 (102)
..+.+..-..|+++|+.|..||.+++.++++
T Consensus 6 ~~~~~~~~~~i~~qg~~vr~lk~~~a~k~~i 36 (477)
T 1r6t_A 6 PASLLELFNSIATQGELVRSLKAGNASKDEI 36 (477)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHTTCCHHHH
T ss_pred ccchHHHHHHHHHhHHHHHhcccccccchhh
Confidence 3455778889999999999999998888765
No 26
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=35.01 E-value=42 Score=19.96 Aligned_cols=26 Identities=19% Similarity=0.235 Sum_probs=21.1
Q ss_pred CCChhhHHHHHHHHHHhhHHHHHhhh
Q 047331 67 PPSEADREAAKLFVKEKGEGVAKLKS 92 (102)
Q Consensus 67 ~~~~~~iea~ka~v~ekg~~V~~lK~ 92 (102)
.|+..|+|+.|....+--.-++.|++
T Consensus 15 ~p~~~d~eaLk~E~~eLk~k~~~L~~ 40 (53)
T 2yy0_A 15 TPENPEIELLRLELAEMKEKYEAIVE 40 (53)
T ss_dssp -CCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCChhhHHHHHHHHHHHHHHHHHHHH
Confidence 68899999999998888777777754
No 27
>1osy_A Immunomodulatory protein FIP-FVE; fungal protein, fibronectin fold, hemagglutination, lectin, sugar binding protein, immune system; 1.70A {Flammulina velutipes} SCOP: b.1.21.1
Probab=34.71 E-value=21 Score=24.72 Aligned_cols=41 Identities=20% Similarity=0.294 Sum_probs=30.0
Q ss_pred eecCCCCeeEEEEEeCCCCC---CceeEEEecCCCCCCCceeEee
Q 047331 8 GRKQDKDWLAFFEVNDGSCF---DNLQVLVERNGCGGAGEMFQVT 49 (102)
Q Consensus 8 ~R~~k~g~~~Fl~lnDGS~~---~~LQvVv~~sdcEGage~fqVT 49 (102)
+.+.|..++-||+-|-|-.+ +.|||.|--.| .|.+|.|-|.
T Consensus 67 V~sdGsQkvNFLeYN~GyGiADT~TIQV~VvdPD-t~nse~~iiA 110 (115)
T 1osy_A 67 VTPSGGQTINFLQYNKGYGVADTKTIQVFVVIPD-TGNSEEYIIA 110 (115)
T ss_dssp BCTTSCEEEEGGGTTTTCCEETTSCEEEEEECSS-STTCCEEEEE
T ss_pred ecCCCCceEeEEEecCcccccccceEEEEEEcCC-CCCchheeEe
Confidence 34556678999999999865 67999665455 6777888764
No 28
>3csx_A Putative uncharacterized protein; metalloprotein, nitrogen fixation, cyanobacteria, circadian rhythms, metal binding protein, unknown function; 1.84A {Cyanothece}
Probab=28.89 E-value=20 Score=23.57 Aligned_cols=28 Identities=14% Similarity=0.191 Sum_probs=13.0
Q ss_pred CCCCCChhhHHHHHHHHHHhhHHHHHhh
Q 047331 64 KNPPPSEADREAAKLFVKEKGEGVAKLK 91 (102)
Q Consensus 64 ~~~~~~~~~iea~ka~v~ekg~~V~~lK 91 (102)
.+..|+++|+++.|..|+.-....-++|
T Consensus 8 ~~~~~t~~di~eLkkevkKL~~~A~q~k 35 (81)
T 3csx_A 8 TDNNPTPEAVADLKKKVRKLNSKAGQMK 35 (81)
T ss_dssp ----------CCHHHHHHHHHHHHHHHH
T ss_pred CCCCCChhHHHHHHHHHHHHHHHHHHHH
Confidence 3566777899999998887666555554
No 29
>1p6v_A SSRA-binding protein; SMPB, tmRNA, trans-translation, protein-RNA complex, RNA binding protein/RNA complex; 3.20A {Aquifex aeolicus} SCOP: b.111.1.1 PDB: 2ob7_B 1k8h_A 1zc8_K
Probab=26.86 E-value=8.8 Score=28.09 Aligned_cols=26 Identities=23% Similarity=0.416 Sum_probs=16.5
Q ss_pred cee-EeceecCCCCee--EEEEEeCCCCC
Q 047331 2 AGW-VKIGRKQDKDWL--AFFEVNDGSCF 27 (102)
Q Consensus 2 ~GW-Vks~R~~k~g~~--~Fl~lnDGS~~ 27 (102)
.|| |||+|..++.++ +|+.+.||-.+
T Consensus 32 ~GtEVKSlR~~Gk~~l~dsy~~i~~gE~~ 60 (156)
T 1p6v_A 32 KGSEVKSLREKGTVSFKDSFVRIENGEAW 60 (156)
T ss_dssp CHHHHHHHHSCCCEECTTCCEECCSSCCE
T ss_pred ccceehhHHHcCCcceEeeEEEEECCEEE
Confidence 466 789994452222 57888888743
No 30
>2pi2_A Replication protein A 32 kDa subunit; FULL-length RPA14/32, ssDNA binding protein, OB-fold, dioxan replication, DNA binding protein; 2.00A {Homo sapiens} SCOP: b.40.4.3 PDB: 2z6k_A 1dpu_A 1z1d_A
Probab=25.40 E-value=73 Score=23.75 Aligned_cols=23 Identities=13% Similarity=0.281 Sum_probs=20.1
Q ss_pred ceeEeceecCCCCeeEEEEEeCCCC
Q 047331 2 AGWVKIGRKQDKDWLAFFEVNDGSC 26 (102)
Q Consensus 2 ~GWVks~R~~k~g~~~Fl~lnDGS~ 26 (102)
-|+|+++...+ ...-+.|.|||.
T Consensus 77 vG~V~~i~~~~--~~~~~~L~D~TG 99 (270)
T 2pi2_A 77 VGIIRHAEKAP--TNIVYKIDDMTA 99 (270)
T ss_dssp EEEEEEEEECS--SEEEEEEECSSS
T ss_pred EEEEEEEEecc--ceEEEEEECCCC
Confidence 58999998887 788889999997
No 31
>1zvz_B Talin 1, metavinculin; complex, protein binding; 1.80A {Gallus gallus}
Probab=23.18 E-value=86 Score=16.09 Aligned_cols=20 Identities=15% Similarity=0.307 Sum_probs=17.2
Q ss_pred HHHHHHHHHHhhHHHHHhhh
Q 047331 73 REAAKLFVKEKGEGVAKLKS 92 (102)
Q Consensus 73 iea~ka~v~ekg~~V~~lK~ 92 (102)
+..+|......+.+|..+|.
T Consensus 4 v~qak~laqat~~Li~~~K~ 23 (26)
T 1zvz_B 4 VRQARILAQATSDLVNAIKA 23 (26)
T ss_dssp HHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 57788888899999999985
No 32
>3kf8_A Protein STN1; OB fold; 2.40A {Candida tropicalis mya-3404}
Probab=22.89 E-value=1.6e+02 Score=22.23 Aligned_cols=40 Identities=10% Similarity=0.128 Sum_probs=27.6
Q ss_pred eeEEEEEeCCCCCC-ceeEEEe-----c----CCCCCCCceeEeeehhhh
Q 047331 15 WLAFFEVNDGSCFD-NLQVLVE-----R----NGCGGAGEMFQVTTLLSE 54 (102)
Q Consensus 15 ~~~Fl~lnDGS~~~-~LQvVv~-----~----sdcEGage~fqVTTLl~k 54 (102)
.+.|+.|.|+|... .|.|.++ + -++..-|..++|+--++.
T Consensus 110 ~~~~l~IDDsSG~~s~i~~k~~~~~~~~~gl~l~~~~~G~iV~VkG~i~~ 159 (220)
T 3kf8_A 110 SYVILVISDFIGIDSKIRVRLSQEQFKEVGLTLDKKNYGKIVELEGEIYN 159 (220)
T ss_dssp CEEEEEEECCCSSSCEEEEEEEHHHHHTTTCCTTSCCTTCEEEEEEEEEE
T ss_pred ceEEEEEeCCCCCCceEEEEecHHHhhccCccccccCCCeEEEEEEEEEe
Confidence 68999999999873 3555554 1 233556888888776654
No 33
>2kvc_A Putative uncharacterized protein; structural genomics, seattle structural genomi for infectious disease, ssgcid, unknown function; NMR {Mycobacterium tuberculosis}
Probab=22.24 E-value=50 Score=22.47 Aligned_cols=21 Identities=24% Similarity=0.357 Sum_probs=18.1
Q ss_pred CCCCCChhhHHHHHHHHHHhh
Q 047331 64 KNPPPSEADREAAKLFVKEKG 84 (102)
Q Consensus 64 ~~~~~~~~~iea~ka~v~ekg 84 (102)
....|+++||+.+++...++|
T Consensus 70 t~~~Ps~eDI~RV~arLaa~G 90 (103)
T 2kvc_A 70 TDELPSPEDVERVRARLAAQG 90 (103)
T ss_dssp CSSCSCHHHHHHHHHHHGGGC
T ss_pred hccCCCHHHHHHHHHHHHhcC
Confidence 467899999999999888776
Done!