RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= 047331
(102 letters)
>2xgt_A Asparaginyl-tRNA synthetase, cytoplasmic; ligase, ATP-binding,
protein biosynthesis; HET: NSS; 1.90A {Brugia malayi}
PDB: 2xti_A*
Length = 435
Score = 41.0 bits (97), Expect = 1e-05
Identities = 18/55 (32%), Positives = 28/55 (50%), Gaps = 7/55 (12%)
Query: 1 LAGWVKIGRKQDKDWLAFFEVNDGSCFDNLQVLVERNGCGGAGEMFQVTTLLSEA 55
+ GW+ R+Q K L FF + DG+ F LQVL+ C + + T+ +E
Sbjct: 16 IKGWIHRMRRQGKS-LMFFILRDGTGF--LQVLLMDKLC----QTYDALTVNTEC 63
>3m4p_A Ehasnrs, asparaginyl-tRNA synthetase, putative; aminoacyl-tRNA
synthetase, tRNA ligase, AARS, translation,
ATP-binding, nucleotide-binding; HET: 4AD; 2.83A
{Entamoeba histolytica} PDB: 3m4q_A
Length = 456
Score = 38.8 bits (91), Expect = 8e-05
Identities = 13/50 (26%), Positives = 20/50 (40%), Gaps = 3/50 (6%)
Query: 1 LAGWVKIGRKQDKDWLAFFEVNDGSCFDNLQVLVERNGCGGAGEMFQVTT 50
GW RK K L F E+ DGS + Q ++ ++ +T
Sbjct: 35 FKGWAYHIRKARKT-LIFVELRDGSGY--CQCVIFGKELCEPEKVKLLTR 81
>1x54_A Asparaginyl-tRNA synthetase; aminoacyl-tRNA synthetase, riken
structural genomics/proteom initiative, RSGI,
structural genomics, ligase; HET: 4AD; 1.45A
{Pyrococcus horikoshii} PDB: 1x55_A* 1x56_A
Length = 434
Score = 38.3 bits (90), Expect = 1e-04
Identities = 12/40 (30%), Positives = 18/40 (45%), Gaps = 4/40 (10%)
Query: 1 LAGWVKIGRKQDKDWLAFFEVNDGSCFDNLQVLVERNGCG 40
LAGWV + K F + D + +Q +V +N G
Sbjct: 21 LAGWVYTNMRVGK--KIFLWIRDSTGI--VQAVVAKNVVG 56
>1eov_A ASPRS, aspartyl-tRNA synthetase; aminoacyl tRNA synthetase, tRNA
ligase, APO-enzyme, OB-fold,; 2.30A {Saccharomyces
cerevisiae} SCOP: b.40.4.1 d.104.1.1 PDB: 1asy_A*
1asz_A*
Length = 487
Score = 35.4 bits (82), Expect = 0.001
Identities = 14/61 (22%), Positives = 22/61 (36%), Gaps = 8/61 (13%)
Query: 1 LAGWVKIGRKQDKDWLAFFEVNDGSCFDNLQVLVERNGCGGAGEMFQVTTLLSEAEKLEK 60
V R+Q LAF + + +Q LV+ N G + ++ A L
Sbjct: 41 FRARVHNTRQQGAT-LAFLTLRQQASL--IQGLVKANKEGTISK-----NMVKWAGSLNL 92
Query: 61 E 61
E
Sbjct: 93 E 93
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 35.6 bits (81), Expect = 0.001
Identities = 10/87 (11%), Positives = 26/87 (29%), Gaps = 21/87 (24%)
Query: 4 WVKIGRKQDKDWLAFFEVNDGSCFDNLQVL---VERNGCGGAGEMFQVTTLLSEAEKLEK 60
W+ + + + + LQ L ++ N + + + + +
Sbjct: 186 WLNLKNCNSPE----------TVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELR 235
Query: 61 ELMKNPPPSEA--------DREAAKLF 79
L+K+ P + +A F
Sbjct: 236 RLLKSKPYENCLLVLLNVQNAKAWNAF 262
>3nem_A Aspartyl-tRNA synthetase; rossmann fold, OB fold, ligase; HET:
AMO ATP; 1.89A {Thermococcus kodakarensis} PDB: 3nel_A*
3nen_A 1b8a_A*
Length = 438
Score = 34.1 bits (79), Expect = 0.004
Identities = 10/53 (18%), Positives = 20/53 (37%), Gaps = 6/53 (11%)
Query: 1 LAGWVKIGRKQDKDWLAFFEVNDGSCFDNLQVLVERNGCGGAGEMFQVTTLLS 53
+AGWV + + F + D +Q+ + E+F++ L
Sbjct: 21 VAGWVWEVKDLGG--IKFLWIRDRDGI--VQITAPKKKVD--PELFKLIPKLR 67
>1wyd_A Hypothetical aspartyl-tRNA synthetase; archaea, LIGA; HET: EPE;
2.30A {Sulfolobus tokodaii}
Length = 429
Score = 33.7 bits (78), Expect = 0.005
Identities = 11/39 (28%), Positives = 17/39 (43%), Gaps = 4/39 (10%)
Query: 1 LAGWVKIGRKQDKDWLAFFEVNDGSCFDNLQVLVERNGC 39
AGWV + R F + D + QV+V++N
Sbjct: 21 WAGWVHLLRDLGG--KKFIILRDKTGL--GQVVVDKNSS 55
>1n9w_A Aspartyl-tRNA synthetase 2; biosynthetic protein; 2.30A {Thermus
thermophilus} SCOP: b.40.4.1 d.104.1.1 PDB: 3kfu_A*
Length = 422
Score = 31.4 bits (72), Expect = 0.036
Identities = 12/57 (21%), Positives = 21/57 (36%), Gaps = 4/57 (7%)
Query: 1 LAGWVKIGRKQDKDWLAFFEVNDGSCFDNLQVLVERNGCGGAGEMFQVTTLLSEAEK 57
L G++ R + + F + D S +QV+ +V L+ E K
Sbjct: 18 LLGFLHWRRDLGR--IQFLLLRDRSGV--VQVVTGGLKLPLPESALRVRGLVVENAK 70
>2djv_A Methionyl-tRNA synthetase; EC 6.1.1.10, WHEP-TRS domain, structural
genomics, NPPSFA; NMR {Homo sapiens}
Length = 79
Score = 29.7 bits (66), Expect = 0.060
Identities = 9/37 (24%), Positives = 16/37 (43%)
Query: 64 KNPPPSEADREAAKLFVKEKGEGVAKLKSKKASKEVL 100
+A V ++G V +LK++KA K +
Sbjct: 6 SGTTAKPQQIQALMDEVTKQGNIVRELKAQKADKNEV 42
>2dx0_A Phospholipase C, gamma 2; phosphoric diester hydrolase, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; 2.50A {Mus musculus}
Length = 138
Score = 27.9 bits (62), Expect = 0.44
Identities = 5/30 (16%), Positives = 16/30 (53%), Gaps = 1/30 (3%)
Query: 6 KIGRKQDKDWLAFFEVNDGSCFDNLQVLVE 35
+I R ++ + + + D F+++ L++
Sbjct: 79 RI-RSTMENGVMKYYLTDNLTFNSIYALIQ 107
>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-PR;
fatty acid synthase, acyl-carrier-protein, beta-ketoacyl
RED beta-ketoacyl synthase, dehydratase; 4.00A
{Saccharomyces cerevisiae}
Length = 1688
Score = 27.9 bits (62), Expect = 0.55
Identities = 13/49 (26%), Positives = 23/49 (46%), Gaps = 10/49 (20%)
Query: 44 EMFQVT-----TLLSEAEKLEKELMKNPPPSEADREAAKLFVKEKGEGV 87
E+F ++ E +E++L P EA +E A+ F + G+ V
Sbjct: 910 ELFNGYNPEKKEMIQEVI-VEEDL----EPFEASKETAEQFKHQHGDKV 953
>1u6t_A SH3 domain-binding glutamic acid-rich-like protein; SH3-binding,
glutaredoxin, thioredoxin fold, crystallography, protein
binding; HET: CIT; 1.90A {Homo sapiens} PDB: 1wry_A
Length = 121
Score = 26.5 bits (58), Expect = 1.3
Identities = 9/46 (19%), Positives = 13/46 (28%), Gaps = 4/46 (8%)
Query: 31 QVLVERNGCGGAGEMFQVTTLLSEAEKLEKELMKNPPPSEADREAA 76
Q+ E G F+ E + L PP + E
Sbjct: 67 QIFNESQYRGDYDAFFE----ARENNAVYAFLGLTAPPGSKEAEVQ 108
>3pqz_A Growth factor receptor-bound protein 7; SH2, binds
phosphotyrosine, tyrosine kinases, cytoplasmic, P
binding; 2.41A {Homo sapiens} PDB: 1mw4_A* 2l4k_A*
2qms_A
Length = 117
Score = 26.1 bits (58), Expect = 1.5
Identities = 8/30 (26%), Positives = 14/30 (46%)
Query: 6 KIGRKQDKDWLAFFEVNDGSCFDNLQVLVE 35
I +++ L F + + F +L LVE
Sbjct: 66 LILPSEEEGRLYFSMDDGQTRFTDLLQLVE 95
>2jnz_A PHL P 3 allergen; timothy grass pollen; NMR {Phleum pratense}
Length = 108
Score = 25.6 bits (56), Expect = 2.2
Identities = 6/30 (20%), Positives = 11/30 (36%), Gaps = 2/30 (6%)
Query: 19 FEVNDGSCFDNLQVLVERNGCGGAGEMFQV 48
F V GS L + ++ + +V
Sbjct: 17 FTVQKGSDPKKLVLDIKYT--RPGDSLAEV 44
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 25.7 bits (55), Expect = 2.7
Identities = 8/32 (25%), Positives = 11/32 (34%), Gaps = 5/32 (15%)
Query: 54 EAEKLEKELMKNPPPSEADREAAKLFVKEKGE 85
+KL+ L S A L +K E
Sbjct: 21 ALKKLQASLKLYADDS-----APALAIKATME 47
>2ark_A Flavodoxin; FMN, structural genomics, PSI, structure initiative,
midwest center for structural genomic electron
transport; 2.40A {Aquifex aeolicus} SCOP: c.23.5.8
Length = 188
Score = 25.4 bits (56), Expect = 3.0
Identities = 8/30 (26%), Positives = 13/30 (43%)
Query: 67 PPSEADREAAKLFVKEKGEGVAKLKSKKAS 96
P SE ++EA + + E VA +
Sbjct: 145 PRSEEEKEACRRLGRRLAEWVAIFVDGRKE 174
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 25.8 bits (56), Expect = 3.1
Identities = 8/40 (20%), Positives = 15/40 (37%), Gaps = 5/40 (12%)
Query: 35 ERNGCGGAGEMFQVTTLLSEAEKLEKELMK-NP--PPSEA 71
N G M ++ L E+++ + K N P +
Sbjct: 328 LENNEGVPSPMLSISNL--TQEQVQDYVNKTNSHLPAGKQ 365
>3ft1_A PHL P 3 allergen; beta-barrel; 1.79A {Phleum pratense} PDB:
3ft9_A
Length = 100
Score = 25.2 bits (55), Expect = 3.3
Identities = 6/30 (20%), Positives = 11/30 (36%), Gaps = 2/30 (6%)
Query: 19 FEVNDGSCFDNLQVLVERNGCGGAGEMFQV 48
F V GS L + ++ + +V
Sbjct: 6 FTVQKGSDPKKLVLDIKYT--RPGDSLAEV 33
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Length = 347
Score = 25.7 bits (57), Expect = 3.3
Identities = 11/32 (34%), Positives = 18/32 (56%)
Query: 25 SCFDNLQVLVERNGCGGAGEMFQVTTLLSEAE 56
S F +L L+ER G G + + T+L E++
Sbjct: 195 SVFSSLPKLLERAGPAPKGSITAIYTVLLESD 226
>1d2d_A TRNA synthetase, tRNA ligase; tRNA synthetase (ligase), protein
transcription; NMR {Cricetulus griseus} SCOP: a.16.1.3
PDB: 1r1b_A
Length = 59
Score = 24.5 bits (53), Expect = 3.3
Identities = 9/21 (42%), Positives = 14/21 (66%)
Query: 80 VKEKGEGVAKLKSKKASKEVL 100
+ +GE V KLK++KA K +
Sbjct: 6 IAAQGEVVRKLKAEKAPKAKV 26
>2ac1_A Invertase; five fold beta propeller, hydrolase; HET: NAG MAN; 2.15A
{Arabidopsis thaliana} PDB: 2xqr_A* 2oxb_A* 2qqw_A*
2qqv_A* 2qqu_A*
Length = 541
Score = 25.7 bits (56), Expect = 3.3
Identities = 6/28 (21%), Positives = 11/28 (39%)
Query: 68 PSEADREAAKLFVKEKGEGVAKLKSKKA 95
P A +++ LF G + + A
Sbjct: 505 PKLAIGKSSHLFAFNYGYQSVDVLNLNA 532
>1fyj_A Multifunctional aminoacyl-tRNA synthetase; helix-turn-helix,
ligase; NMR {Homo sapiens} SCOP: a.16.1.3
Length = 57
Score = 24.1 bits (52), Expect = 4.6
Identities = 10/21 (47%), Positives = 15/21 (71%)
Query: 80 VKEKGEGVAKLKSKKASKEVL 100
V +G+ V +LK+KKA KE +
Sbjct: 9 VAVQGDVVRELKAKKAPKEDV 29
>2zki_A 199AA long hypothetical Trp repressor binding protein; alpha/beta
structure, transcription; 2.90A {Sulfolobus tokodaii}
Length = 199
Score = 25.1 bits (55), Expect = 5.2
Identities = 6/28 (21%), Positives = 10/28 (35%)
Query: 67 PPSEADREAAKLFVKEKGEGVAKLKSKK 94
E +R+ A+ K E +K
Sbjct: 171 ELDEMERKIARFQGKRITEVAKAIKCCN 198
>3r9q_A Enoyl-COA hydratase/isomerase; ssgcid, lyase,isomerase; 2.10A
{Mycobacterium abscessus} PDB: 3qka_A
Length = 262
Score = 24.9 bits (55), Expect = 5.5
Identities = 9/28 (32%), Positives = 12/28 (42%), Gaps = 1/28 (3%)
Query: 50 TLLSEAEKLEKELMKNPPPS-EADREAA 76
AE L E+ P ADR++A
Sbjct: 191 QAREAAETLAAEIAAFPQQCVRADRDSA 218
>3qll_A Citrate lyase; beta barrel; 2.45A {Yersinia pestis}
Length = 316
Score = 24.9 bits (55), Expect = 6.5
Identities = 6/23 (26%), Positives = 12/23 (52%)
Query: 68 PSEADREAAKLFVKEKGEGVAKL 90
P+ A+ A+ + E +GV +
Sbjct: 270 PTAAEIRHARAVLAENTKGVGTV 292
>1ydg_A Trp repressor binding protein WRBA; tetramer, structural genomics,
PSI, protein structure initiative; 2.00A {Deinococcus
radiodurans} SCOP: c.23.5.8 PDB: 1yrh_A*
Length = 211
Score = 24.3 bits (53), Expect = 7.3
Identities = 9/29 (31%), Positives = 14/29 (48%)
Query: 67 PPSEADREAAKLFVKEKGEGVAKLKSKKA 95
P E DR + + V+ + E AKL +
Sbjct: 177 PLLENDRASIRHQVRRQVELTAKLLEGGS 205
>3cux_A Malate synthase; TIM barrel, glyoxylate bypass, transferase,
tricarboxylic acid cycle; 1.70A {Bacillus anthracis}
Length = 528
Score = 24.4 bits (53), Expect = 8.2
Identities = 9/28 (32%), Positives = 13/28 (46%)
Query: 54 EAEKLEKELMKNPPPSEADREAAKLFVK 81
E K+E+E+ K +EA LF
Sbjct: 482 ELAKIEREIGKEAFKKGRFQEATTLFTN 509
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 24.3 bits (52), Expect = 8.3
Identities = 8/33 (24%), Positives = 15/33 (45%), Gaps = 7/33 (21%)
Query: 55 AEKLEKELMKNPPPSEADREAAKLFVKEKGEGV 87
+E++EK + N R A K F ++ +
Sbjct: 128 SEQVEKNKINN-------RIADKAFYQQPDADI 153
>3id7_A Dipeptidase; streptomyces coelicolor A3(2), hydrolase; 1.30A
{Streptomyces coelicolor} PDB: 3isi_X* 3itc_A* 3k5x_A*
3s2j_A* 3s2l_A* 3s2m_A* 3s2n_A*
Length = 400
Score = 24.4 bits (53), Expect = 9.5
Identities = 11/36 (30%), Positives = 15/36 (41%)
Query: 51 LLSEAEKLEKELMKNPPPSEADREAAKLFVKEKGEG 86
+L AE + + L PS A E E+ EG
Sbjct: 365 VLDAAEDVSRGLRAARGPSNATIEQLDGTAAEQPEG 400
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.313 0.132 0.380
Gapped
Lambda K H
0.267 0.0500 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,526,587
Number of extensions: 79605
Number of successful extensions: 225
Number of sequences better than 10.0: 1
Number of HSP's gapped: 224
Number of HSP's successfully gapped: 47
Length of query: 102
Length of database: 6,701,793
Length adjustment: 67
Effective length of query: 35
Effective length of database: 4,831,086
Effective search space: 169088010
Effective search space used: 169088010
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 51 (24.0 bits)