RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= 047331
         (102 letters)



>d1eova1 b.40.4.1 (A:71-204) Aspartyl-tRNA synthetase (AspRS)
          {Baker's yeast (Saccharomyces cerevisiae) [TaxId:
          4932]}
          Length = 134

 Score = 30.4 bits (68), Expect = 0.017
 Identities = 10/54 (18%), Positives = 16/54 (29%), Gaps = 1/54 (1%)

Query: 1  LAGWVKIGRKQDKDWLAFFEVNDGSCFDNLQVLVERNGCGGAGEMFQVTTLLSE 54
              V   R+Q    LAF  +   +      V   + G      +    +L  E
Sbjct: 41 FRARVHNTRQQ-GATLAFLTLRQQASLIQGLVKANKEGTISKNMVKWAGSLNLE 93


>d2arka1 c.23.5.8 (A:1-184) Flavodoxin FldA {Aquifex aeolicus
           [TaxId: 63363]}
          Length = 184

 Score = 27.4 bits (60), Expect = 0.22
 Identities = 8/31 (25%), Positives = 13/31 (41%)

Query: 65  NPPPSEADREAAKLFVKEKGEGVAKLKSKKA 95
             P SE ++EA +   +   E VA     + 
Sbjct: 140 GEPRSEEEKEACRRLGRRLAEWVAIFVDGRK 170


>d1d2da_ a.16.1.3 (A:) Multifunctional Glu-Pro-tRNA synthase (EPRS)
           second repeated element {Chinese hamster (Cricetulus
           griseus) [TaxId: 10029]}
          Length = 56

 Score = 25.0 bits (55), Expect = 0.63
 Identities = 9/21 (42%), Positives = 14/21 (66%)

Query: 80  VKEKGEGVAKLKSKKASKEVL 100
           +  +GE V KLK++KA K  +
Sbjct: 6   IAAQGEVVRKLKAEKAPKAKV 26


>d1fyja_ a.16.1.3 (A:) Multifunctional Glu-Pro-tRNA synthase (EPRS)
           second repeated element {Human (Homo sapiens) [TaxId:
           9606]}
          Length = 57

 Score = 23.9 bits (52), Expect = 1.6
 Identities = 10/21 (47%), Positives = 15/21 (71%)

Query: 80  VKEKGEGVAKLKSKKASKEVL 100
           V  +G+ V +LK+KKA KE +
Sbjct: 9   VAVQGDVVRELKAKKAPKEDV 29


>d1u5ea1 b.55.1.1 (A:14-222) Src-associated adaptor protein Skap2
          {Mouse (Mus musculus) [TaxId: 10090]}
          Length = 209

 Score = 25.3 bits (54), Expect = 1.7
 Identities = 7/36 (19%), Positives = 18/36 (50%)

Query: 47 QVTTLLSEAEKLEKELMKNPPPSEADREAAKLFVKE 82
          ++  LL++ E    + +K    S+  +E  +  +K+
Sbjct: 3  EIRNLLADVETFVADTLKGENLSKKAKEKRESLIKK 38


>d1r6ta1 a.16.1.3 (A:7-60) N-terminal domain of eukaryotic
           tryptophanyl-tRNA synthetase (TrpRS) {Human (Homo
           sapiens) [TaxId: 9606]}
          Length = 54

 Score = 23.5 bits (51), Expect = 2.0
 Identities = 8/21 (38%), Positives = 13/21 (61%)

Query: 80  VKEKGEGVAKLKSKKASKEVL 100
           +  +GE V  LK+  ASK+ +
Sbjct: 10  IATQGELVRSLKAGNASKDEI 30


>d1fjca_ d.58.7.1 (A:) Nucleolin {Golden hamster (Mesocricetus
          auratus) [TaxId: 10036]}
          Length = 96

 Score = 24.2 bits (52), Expect = 2.0
 Identities = 6/20 (30%), Positives = 11/20 (55%)

Query: 62 LMKNPPPSEADREAAKLFVK 81
          ++++P  S+  R A  L  K
Sbjct: 3  MLEDPCTSKKVRAARTLLAK 22


>d2a5la1 c.23.5.8 (A:3-198) Trp repressor binding protein WrbA
           {Pseudomonas aeruginosa [TaxId: 287]}
          Length = 196

 Score = 23.7 bits (50), Expect = 5.3
 Identities = 6/26 (23%), Positives = 8/26 (30%)

Query: 67  PPSEADREAAKLFVKEKGEGVAKLKS 92
              E +    +   K   E   KL S
Sbjct: 171 SLDEHELTLCRALGKRLAETAGKLGS 196


>d1ydga_ c.23.5.8 (A:) Trp repressor binding protein WrbA
           {Deinococcus radiodurans [TaxId: 1299]}
          Length = 201

 Score = 23.3 bits (49), Expect = 7.6
 Identities = 9/25 (36%), Positives = 13/25 (52%)

Query: 67  PPSEADREAAKLFVKEKGEGVAKLK 91
           P  E DR + +  V+ + E  AKL 
Sbjct: 173 PLLENDRASIRHQVRRQVELTAKLL 197


>d1koha2 d.58.7.2 (A:105-200) mRNA export factor tap {Human (Homo
          sapiens) [TaxId: 9606]}
          Length = 96

 Score = 22.8 bits (49), Expect = 8.1
 Identities = 10/18 (55%), Positives = 10/18 (55%), Gaps = 4/18 (22%)

Query: 3  GWVKI----GRKQDKDWL 16
           W KI    GRK DK WL
Sbjct: 14 NWFKITIPYGRKYDKAWL 31


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.313    0.132    0.380 

Gapped
Lambda     K      H
   0.267   0.0592    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 369,932
Number of extensions: 15307
Number of successful extensions: 45
Number of sequences better than 10.0: 1
Number of HSP's gapped: 45
Number of HSP's successfully gapped: 17
Length of query: 102
Length of database: 2,407,596
Length adjustment: 63
Effective length of query: 39
Effective length of database: 1,542,606
Effective search space: 60161634
Effective search space used: 60161634
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 47 (22.2 bits)