BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 047332
(614 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1
Ectodomain
pdb|3RJ0|A Chain A, Plant Steroid Receptor Bri1 Ectodomain In Complex With
Brassinolide
Length = 772
Score = 182 bits (463), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 168/511 (32%), Positives = 242/511 (47%), Gaps = 37/511 (7%)
Query: 105 PQIGNLSKLQYLDLGSNQLSGVIPPEIGHLNQLRILYFDVNQLHGSIPPEIGQLSLINVL 164
P +G+ S LQ+LD+ N+LSG I +L++L NQ G IPP L + L
Sbjct: 214 PFLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPL--PLKSLQYL 271
Query: 165 ALCHNNLYGSIPSSL-GNLSNLANFYFNNNSLFDSIPLVLGNLNSLSTMDLSQNQFXXXX 223
+L N G IP L G L + N + ++P G+ + L ++ LS N F
Sbjct: 272 SLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGEL 331
Query: 224 -XXXXXXXXXXXXXXXXXXXFSGSIPSIIGNL-KSLLQLDLSENQLIGSIPLSFGNLSRL 281
FSG +P + NL SLL LDLS N G I + +
Sbjct: 332 PMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKN 391
Query: 282 TLMSLF--NNLLSGSLPPILGNLKSLSALGLHINQLSGVIPSSIGNLSSLRALYLYNNGL 339
TL L+ NN +G +PP L N L +L L N LSG IPSS+G+LS LR L L+ N L
Sbjct: 392 TLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNML 451
Query: 340 CGFVPEEIRYLKSLSELELCKNHLSGVIPHSIGNLTGLLLLNMCENHLSGPIPKSFKNLT 399
G +P+E+ Y+K+L L L N L+G IP + N T L +++ N L+G IPK L
Sbjct: 452 EGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLE 511
Query: 400 SVERVLLNQNNLSGKVYEAFGDHPNLTFLNLSQNNFCGEISFNWRNFPKLGTFIVSVNNI 459
++ + L+ N+ SG + GD +L +L+L+ N F G I F + G ++ N I
Sbjct: 512 NLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAM--FKQSGK--IAANFI 567
Query: 460 SGSIPPEIGDSPKLQVLDLSSN--SIVGEIPVQLGKLFSLNK------------------ 499
+G I + + + N G QL +L + N
Sbjct: 568 AGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDN 627
Query: 500 ------LILNLNQLSGGMPLELGSLTELQYLDLSANKLKSSIPKSIGNLLRLRYLDLSNN 553
L ++ N LSG +P E+GS+ L L+L N + SIP +G+L L LDLS+N
Sbjct: 628 NGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSN 687
Query: 554 QFGHKIPIELEKLIHLSELDLSYNFLGEEIP 584
+ +IP + L L+E+DLS N L IP
Sbjct: 688 KLDGRIPQAMSALTMLTEIDLSNNNLSGPIP 718
Score = 180 bits (457), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 169/500 (33%), Positives = 243/500 (48%), Gaps = 34/500 (6%)
Query: 67 INLSSMALNGTLQEFAFSSFPHLVQLNLSFNIFFGIIPPQIGNLSKLQYLDLGSNQLSGV 126
+++S L+G A S+ L LN+S N F G IPP L LQYL L N+ +G
Sbjct: 225 LDISGNKLSGDFSR-AISTCTELKLLNISSNQFVGPIPPLP--LKSLQYLSLAENKFTGE 281
Query: 127 IPPEI-GHLNQLRILYFDVNQLHGSIPPEIGQLSLINVLALCHNNLYGSIP-SSLGNLSN 184
IP + G + L L N +G++PP G SL+ LAL NN G +P +L +
Sbjct: 282 IPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRG 341
Query: 185 LANFYFNNNSLFDSIPLVLGNLN-SLSTMDLSQNQFXXXX--XXXXXXXXXXXXXXXXXX 241
L + N +P L NL+ SL T+DLS N F
Sbjct: 342 LKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNN 401
Query: 242 XFSGSIPSIIGNLKSLLQLDLSENQLIGSIPLSFGNLSRLTLMSLFNNLLSGSLPPILGN 301
F+G IP + N L+ L LS N L G+IP S G+LS+L + L+ N+L G +P L
Sbjct: 402 GFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMY 461
Query: 302 LKSLSALGLHINQLSGVIPSSIGNLSSLRALYLYNNGLCGFVPEEIRYLKSLSELELCKN 361
+K+L L L N L+G IPS + N ++L + L NN L G +P+ I L++L+ L+L N
Sbjct: 462 VKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNN 521
Query: 362 HLSGVIPHSIGNLTGLLLLNMCENHLSGPIPKS-FK-------NLTSVERVLLNQNNLSG 413
SG IP +G+ L+ L++ N +G IP + FK N + +R + +N+ G
Sbjct: 522 SFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKND--G 579
Query: 414 KVYEAFGDHPNLTF----------------LNLSQNNFCGEISFNWRNFPKLGTFIVSVN 457
E G L F N++ + G S + N + +S N
Sbjct: 580 MKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYN 639
Query: 458 NISGSIPPEIGDSPKLQVLDLSSNSIVGEIPVQLGKLFSLNKLILNLNQLSGGMPLELGS 517
+SG IP EIG P L +L+L N I G IP ++G L LN L L+ N+L G +P + +
Sbjct: 640 MLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSA 699
Query: 518 LTELQYLDLSANKLKSSIPK 537
LT L +DLS N L IP+
Sbjct: 700 LTMLTEIDLSNNNLSGPIPE 719
Score = 158 bits (399), Expect = 9e-39, Method: Compositional matrix adjust.
Identities = 192/718 (26%), Positives = 303/718 (42%), Gaps = 146/718 (20%)
Query: 7 KETFALLKWKRSLQNKNISLLSSWTLHPDNASNVPSYSKSKISPCAWLGISCNQAGRVIS 66
+E L+ +K L +KN+ +P +S +K +PC + G++C + +V S
Sbjct: 9 REIHQLISFKDVLPDKNL---------------LPDWSSNK-NPCTFDGVTC-RDDKVTS 51
Query: 67 INLSSMALN---------------------------GTLQEFAFSSFPHLVQLNLSFNIF 99
I+LSS LN G++ F S+ L L+LS N
Sbjct: 52 IDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHINGSVSGFKCSA--SLTSLDLSRNSL 109
Query: 100 FGIIPP--QIGNLSKLQYLDLGSNQLSGVIPPEIG---HLNQLRILYFDVNQLHGS---- 150
G + +G+ S L++L++ SN L P ++ LN L +L N + G+
Sbjct: 110 SGPVTTLTSLGSCSGLKFLNVSSNTLD--FPGKVSGGLKLNSLEVLDLSANSISGANVVG 167
Query: 151 --IPPEIGQLSLINVLALCHNNLYGSIPSSLGNLSNLANFYFNNNSLFDSIPLVLGNLNS 208
+ G+L LA+ N + G + S NL ++N+ IP LG+ ++
Sbjct: 168 WVLSDGCGELK---HLAISGNKISGDVDVS--RCVNLEFLDVSSNNFSTGIPF-LGDCSA 221
Query: 209 LSTMDLSQNQFXXXXXXXXXXXXXXXXXXXXXXXFSGSIPSIIGNLKSLLQLDLSENQLI 268
L +D+S N+ F G IP + LKSL L L+EN+
Sbjct: 222 LQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPLP--LKSLQYLSLAENKFT 279
Query: 269 GSIP-LSFGNLSRLTLMSLFNNLLSGSLPPILG-------------------------NL 302
G IP G LT + L N G++PP G +
Sbjct: 280 GEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKM 339
Query: 303 KSLSALGLHINQLSGVIPSSIGNLS---------------------------SLRALYLY 335
+ L L L N+ SG +P S+ NLS +L+ LYL
Sbjct: 340 RGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQ 399
Query: 336 NNGLCGFVPEEIRYLKSLSELELCKNHLSGVIPHSIGNLTGLLLLNMCENHLSGPIPKSF 395
NNG G +P + L L L N+LSG IP S+G+L+ L L + N L G IP+
Sbjct: 400 NNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQEL 459
Query: 396 KNLTSVERVLLNQNNLSGKVYEAFGDHPNLTFLNLSQNNFCGEISFNWRNFPKLGTFIVS 455
+ ++E ++L+ N+L+G++ + NL +++LS N GEI L +S
Sbjct: 460 MYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLS 519
Query: 456 VNNISGSIPPEIGDSPKLQVLDLSSNSIVGEIPV----QLGKL---FSLNKLILNLNQLS 508
N+ SG+IP E+GD L LDL++N G IP Q GK+ F K + +
Sbjct: 520 NNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKN-- 577
Query: 509 GGMPLEL---GSLTELQYLDLSA-NKLKSSIPKSIGNLL-------------RLRYLDLS 551
GM E G+L E Q + N+L + P +I + + + +LD+S
Sbjct: 578 DGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMS 637
Query: 552 NNQFGHKIPIELEKLIHLSELDLSYNFLGEEIPFQICNVKSLEKLNLCHNNLLGSFQQ 609
N IP E+ + +L L+L +N + IP ++ +++ L L+L N L G Q
Sbjct: 638 YNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQ 695
Score = 136 bits (343), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 119/371 (32%), Positives = 169/371 (45%), Gaps = 70/371 (18%)
Query: 89 LVQLNLSFNIFFGIIPPQIGNLSKLQYLDLGSNQLSGVIPPEIGHLNQLRILYFDVNQLH 148
L +L L N F G IPP + N S+L L L N LSG IP +G L++LR L +N L
Sbjct: 393 LQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLE 452
Query: 149 GSIPPEIGQLSLINVLALCHNNLYGSIPSSLGNLSNLANFYFNNNSLFDSIPLVLGNLNS 208
G IP E+ + + L L N+L G IPS L N +NL +NN L IP +G L +
Sbjct: 453 GEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLEN 512
Query: 209 LSTMDLSQNQFXXXXXXXXXXXXXXXXXXXXXXXFSGSIPSIIGNLKSLLQLDLSENQLI 268
L+ + LS N F SG+IP+ +G+ +SL+ LDL+ N
Sbjct: 513 LAILKLSNNSF------------------------SGNIPAELGDCRSLIWLDLNTNLFN 548
Query: 269 GSIPLSF--------------------------------GNL-----------SRLTLMS 285
G+IP + GNL +RL+ +
Sbjct: 549 GTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRN 608
Query: 286 LFN---NLLSGSLPPILGNLKSLSALGLHINQLSGVIPSSIGNLSSLRALYLYNNGLCGF 342
N + G P N S+ L + N LSG IP IG++ L L L +N + G
Sbjct: 609 PCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGS 668
Query: 343 VPEEIRYLKSLSELELCKNHLSGVIPHSIGNLTGLLLLNMCENHLSGPIPKSFKNLTSVE 402
+P+E+ L+ L+ L+L N L G IP ++ LT L +++ N+LSGPIP+ + T
Sbjct: 669 IPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFETFPP 728
Query: 403 RVLLNQNNLSG 413
LN L G
Sbjct: 729 AKFLNNPGLCG 739
Score = 90.5 bits (223), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 119/376 (31%), Positives = 178/376 (47%), Gaps = 36/376 (9%)
Query: 256 SLLQLDLSENQLIGSIPL--SFGNLSRLTLMSLFNNLLSGSLP-PILGNLK--SLSALGL 310
SL LDLS N L G + S G+ S L +++ +N L P + G LK SL L L
Sbjct: 98 SLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLD--FPGKVSGGLKLNSLEVLDL 155
Query: 311 HINQLSG------VIPSSIGNLSSLRALYLYNNGLCGFVPEEIRYLKSLSELELCKNHLS 364
N +SG V+ G L+ L + N + G V ++ +L L++ N+ S
Sbjct: 156 SANSISGANVVGWVLSDGCG---ELKHLAISGNKISGDV--DVSRCVNLEFLDVSSNNFS 210
Query: 365 GVIPHSIGNLTGLLLLNMCENHLSGPIPKSFKNLTSVERVLLNQNNLSGKVYEAFGDHPN 424
IP +G+ + L L++ N LSG ++ T ++ + ++ N G + +
Sbjct: 211 TGIPF-LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPL--PLKS 267
Query: 425 LTFLNLSQNNFCGEI-SFNWRNFPKLGTFIVSVNNISGSIPPEIGDSPKLQVLDLSSNSI 483
L +L+L++N F GEI F L +S N+ G++PP G L+ L LSSN+
Sbjct: 268 LQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNF 327
Query: 484 VGEIPVQ-LGKLFSLNKLILNLNQLSGGMPLELGSLTE-LQYLDLSANKLKSSI------ 535
GE+P+ L K+ L L L+ N+ SG +P L +L+ L LDLS+N I
Sbjct: 328 SGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQ 387
Query: 536 -PKSIGNLLRLRYLDLSNNQFGHKIPIELEKLIHLSELDLSYNFLGEEIPFQICNVKSLE 594
PK+ L+ L L NN F KIP L L L LS+N+L IP + ++ L
Sbjct: 388 NPKNT-----LQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLR 442
Query: 595 KLNLCHNNLLGSFQQK 610
L L N L G Q+
Sbjct: 443 DLKLWLNMLEGEIPQE 458
>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
pdb|3RGZ|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
Length = 768
Score = 182 bits (463), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 168/511 (32%), Positives = 242/511 (47%), Gaps = 37/511 (7%)
Query: 105 PQIGNLSKLQYLDLGSNQLSGVIPPEIGHLNQLRILYFDVNQLHGSIPPEIGQLSLINVL 164
P +G+ S LQ+LD+ N+LSG I +L++L NQ G IPP L + L
Sbjct: 217 PFLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPL--PLKSLQYL 274
Query: 165 ALCHNNLYGSIPSSL-GNLSNLANFYFNNNSLFDSIPLVLGNLNSLSTMDLSQNQFXXXX 223
+L N G IP L G L + N + ++P G+ + L ++ LS N F
Sbjct: 275 SLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGEL 334
Query: 224 -XXXXXXXXXXXXXXXXXXXFSGSIPSIIGNL-KSLLQLDLSENQLIGSIPLSFGNLSRL 281
FSG +P + NL SLL LDLS N G I + +
Sbjct: 335 PMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKN 394
Query: 282 TLMSLF--NNLLSGSLPPILGNLKSLSALGLHINQLSGVIPSSIGNLSSLRALYLYNNGL 339
TL L+ NN +G +PP L N L +L L N LSG IPSS+G+LS LR L L+ N L
Sbjct: 395 TLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNML 454
Query: 340 CGFVPEEIRYLKSLSELELCKNHLSGVIPHSIGNLTGLLLLNMCENHLSGPIPKSFKNLT 399
G +P+E+ Y+K+L L L N L+G IP + N T L +++ N L+G IPK L
Sbjct: 455 EGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLE 514
Query: 400 SVERVLLNQNNLSGKVYEAFGDHPNLTFLNLSQNNFCGEISFNWRNFPKLGTFIVSVNNI 459
++ + L+ N+ SG + GD +L +L+L+ N F G I F + G ++ N I
Sbjct: 515 NLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAM--FKQSGK--IAANFI 570
Query: 460 SGSIPPEIGDSPKLQVLDLSSN--SIVGEIPVQLGKLFSLNK------------------ 499
+G I + + + N G QL +L + N
Sbjct: 571 AGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDN 630
Query: 500 ------LILNLNQLSGGMPLELGSLTELQYLDLSANKLKSSIPKSIGNLLRLRYLDLSNN 553
L ++ N LSG +P E+GS+ L L+L N + SIP +G+L L LDLS+N
Sbjct: 631 NGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSN 690
Query: 554 QFGHKIPIELEKLIHLSELDLSYNFLGEEIP 584
+ +IP + L L+E+DLS N L IP
Sbjct: 691 KLDGRIPQAMSALTMLTEIDLSNNNLSGPIP 721
Score = 180 bits (456), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 169/500 (33%), Positives = 243/500 (48%), Gaps = 34/500 (6%)
Query: 67 INLSSMALNGTLQEFAFSSFPHLVQLNLSFNIFFGIIPPQIGNLSKLQYLDLGSNQLSGV 126
+++S L+G A S+ L LN+S N F G IPP L LQYL L N+ +G
Sbjct: 228 LDISGNKLSGDFSR-AISTCTELKLLNISSNQFVGPIPPLP--LKSLQYLSLAENKFTGE 284
Query: 127 IPPEI-GHLNQLRILYFDVNQLHGSIPPEIGQLSLINVLALCHNNLYGSIP-SSLGNLSN 184
IP + G + L L N +G++PP G SL+ LAL NN G +P +L +
Sbjct: 285 IPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRG 344
Query: 185 LANFYFNNNSLFDSIPLVLGNLN-SLSTMDLSQNQFXXXX--XXXXXXXXXXXXXXXXXX 241
L + N +P L NL+ SL T+DLS N F
Sbjct: 345 LKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNN 404
Query: 242 XFSGSIPSIIGNLKSLLQLDLSENQLIGSIPLSFGNLSRLTLMSLFNNLLSGSLPPILGN 301
F+G IP + N L+ L LS N L G+IP S G+LS+L + L+ N+L G +P L
Sbjct: 405 GFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMY 464
Query: 302 LKSLSALGLHINQLSGVIPSSIGNLSSLRALYLYNNGLCGFVPEEIRYLKSLSELELCKN 361
+K+L L L N L+G IPS + N ++L + L NN L G +P+ I L++L+ L+L N
Sbjct: 465 VKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNN 524
Query: 362 HLSGVIPHSIGNLTGLLLLNMCENHLSGPIPKS-FK-------NLTSVERVLLNQNNLSG 413
SG IP +G+ L+ L++ N +G IP + FK N + +R + +N+ G
Sbjct: 525 SFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKND--G 582
Query: 414 KVYEAFGDHPNLTF----------------LNLSQNNFCGEISFNWRNFPKLGTFIVSVN 457
E G L F N++ + G S + N + +S N
Sbjct: 583 MKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYN 642
Query: 458 NISGSIPPEIGDSPKLQVLDLSSNSIVGEIPVQLGKLFSLNKLILNLNQLSGGMPLELGS 517
+SG IP EIG P L +L+L N I G IP ++G L LN L L+ N+L G +P + +
Sbjct: 643 MLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSA 702
Query: 518 LTELQYLDLSANKLKSSIPK 537
LT L +DLS N L IP+
Sbjct: 703 LTMLTEIDLSNNNLSGPIPE 722
Score = 158 bits (399), Expect = 9e-39, Method: Compositional matrix adjust.
Identities = 191/718 (26%), Positives = 303/718 (42%), Gaps = 146/718 (20%)
Query: 7 KETFALLKWKRSLQNKNISLLSSWTLHPDNASNVPSYSKSKISPCAWLGISCNQAGRVIS 66
+E L+ +K L +KN+ +P +S +K +PC + G++C + +V S
Sbjct: 12 REIHQLISFKDVLPDKNL---------------LPDWSSNK-NPCTFDGVTC-RDDKVTS 54
Query: 67 INLSSMALN---------------------------GTLQEFAFSSFPHLVQLNLSFNIF 99
I+LSS LN G++ F S+ L L+LS N
Sbjct: 55 IDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHINGSVSGFKCSA--SLTSLDLSRNSL 112
Query: 100 FGIIPP--QIGNLSKLQYLDLGSNQLSGVIPPEIG---HLNQLRILYFDVNQLHGS---- 150
G + +G+ S L++L++ SN L P ++ LN L +L N + G+
Sbjct: 113 SGPVTTLTSLGSCSGLKFLNVSSNTLD--FPGKVSGGLKLNSLEVLDLSANSISGANVVG 170
Query: 151 --IPPEIGQLSLINVLALCHNNLYGSIPSSLGNLSNLANFYFNNNSLFDSIPLVLGNLNS 208
+ G+L LA+ N + G + + NL ++N+ IP LG+ ++
Sbjct: 171 WVLSDGCGELK---HLAISGNKISGDV--DVSRCVNLEFLDVSSNNFSTGIPF-LGDCSA 224
Query: 209 LSTMDLSQNQFXXXXXXXXXXXXXXXXXXXXXXXFSGSIPSIIGNLKSLLQLDLSENQLI 268
L +D+S N+ F G IP + LKSL L L+EN+
Sbjct: 225 LQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPLP--LKSLQYLSLAENKFT 282
Query: 269 GSIP-LSFGNLSRLTLMSLFNNLLSGSLPPILG-------------------------NL 302
G IP G LT + L N G++PP G +
Sbjct: 283 GEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKM 342
Query: 303 KSLSALGLHINQLSGVIPSSIGNLS---------------------------SLRALYLY 335
+ L L L N+ SG +P S+ NLS +L+ LYL
Sbjct: 343 RGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQ 402
Query: 336 NNGLCGFVPEEIRYLKSLSELELCKNHLSGVIPHSIGNLTGLLLLNMCENHLSGPIPKSF 395
NNG G +P + L L L N+LSG IP S+G+L+ L L + N L G IP+
Sbjct: 403 NNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQEL 462
Query: 396 KNLTSVERVLLNQNNLSGKVYEAFGDHPNLTFLNLSQNNFCGEISFNWRNFPKLGTFIVS 455
+ ++E ++L+ N+L+G++ + NL +++LS N GEI L +S
Sbjct: 463 MYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLS 522
Query: 456 VNNISGSIPPEIGDSPKLQVLDLSSNSIVGEIPV----QLGKL---FSLNKLILNLNQLS 508
N+ SG+IP E+GD L LDL++N G IP Q GK+ F K + +
Sbjct: 523 NNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKN-- 580
Query: 509 GGMPLEL---GSLTELQYLDLSA-NKLKSSIPKSIGNLL-------------RLRYLDLS 551
GM E G+L E Q + N+L + P +I + + + +LD+S
Sbjct: 581 DGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMS 640
Query: 552 NNQFGHKIPIELEKLIHLSELDLSYNFLGEEIPFQICNVKSLEKLNLCHNNLLGSFQQ 609
N IP E+ + +L L+L +N + IP ++ +++ L L+L N L G Q
Sbjct: 641 YNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQ 698
Score = 137 bits (344), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 119/371 (32%), Positives = 169/371 (45%), Gaps = 70/371 (18%)
Query: 89 LVQLNLSFNIFFGIIPPQIGNLSKLQYLDLGSNQLSGVIPPEIGHLNQLRILYFDVNQLH 148
L +L L N F G IPP + N S+L L L N LSG IP +G L++LR L +N L
Sbjct: 396 LQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLE 455
Query: 149 GSIPPEIGQLSLINVLALCHNNLYGSIPSSLGNLSNLANFYFNNNSLFDSIPLVLGNLNS 208
G IP E+ + + L L N+L G IPS L N +NL +NN L IP +G L +
Sbjct: 456 GEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLEN 515
Query: 209 LSTMDLSQNQFXXXXXXXXXXXXXXXXXXXXXXXFSGSIPSIIGNLKSLLQLDLSENQLI 268
L+ + LS N F SG+IP+ +G+ +SL+ LDL+ N
Sbjct: 516 LAILKLSNNSF------------------------SGNIPAELGDCRSLIWLDLNTNLFN 551
Query: 269 GSIPLSF--------------------------------GNL-----------SRLTLMS 285
G+IP + GNL +RL+ +
Sbjct: 552 GTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRN 611
Query: 286 LFN---NLLSGSLPPILGNLKSLSALGLHINQLSGVIPSSIGNLSSLRALYLYNNGLCGF 342
N + G P N S+ L + N LSG IP IG++ L L L +N + G
Sbjct: 612 PCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGS 671
Query: 343 VPEEIRYLKSLSELELCKNHLSGVIPHSIGNLTGLLLLNMCENHLSGPIPKSFKNLTSVE 402
+P+E+ L+ L+ L+L N L G IP ++ LT L +++ N+LSGPIP+ + T
Sbjct: 672 IPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFETFPP 731
Query: 403 RVLLNQNNLSG 413
LN L G
Sbjct: 732 AKFLNNPGLCG 742
Score = 90.5 bits (223), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 119/376 (31%), Positives = 178/376 (47%), Gaps = 36/376 (9%)
Query: 256 SLLQLDLSENQLIGSIPL--SFGNLSRLTLMSLFNNLLSGSLP-PILGNLK--SLSALGL 310
SL LDLS N L G + S G+ S L +++ +N L P + G LK SL L L
Sbjct: 101 SLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLD--FPGKVSGGLKLNSLEVLDL 158
Query: 311 HINQLSG------VIPSSIGNLSSLRALYLYNNGLCGFVPEEIRYLKSLSELELCKNHLS 364
N +SG V+ G L+ L + N + G V ++ +L L++ N+ S
Sbjct: 159 SANSISGANVVGWVLSDGCG---ELKHLAISGNKISGDV--DVSRCVNLEFLDVSSNNFS 213
Query: 365 GVIPHSIGNLTGLLLLNMCENHLSGPIPKSFKNLTSVERVLLNQNNLSGKVYEAFGDHPN 424
IP +G+ + L L++ N LSG ++ T ++ + ++ N G + +
Sbjct: 214 TGIPF-LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPL--PLKS 270
Query: 425 LTFLNLSQNNFCGEI-SFNWRNFPKLGTFIVSVNNISGSIPPEIGDSPKLQVLDLSSNSI 483
L +L+L++N F GEI F L +S N+ G++PP G L+ L LSSN+
Sbjct: 271 LQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNF 330
Query: 484 VGEIPVQ-LGKLFSLNKLILNLNQLSGGMPLELGSLT-ELQYLDLSANKLKSSI------ 535
GE+P+ L K+ L L L+ N+ SG +P L +L+ L LDLS+N I
Sbjct: 331 SGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQ 390
Query: 536 -PKSIGNLLRLRYLDLSNNQFGHKIPIELEKLIHLSELDLSYNFLGEEIPFQICNVKSLE 594
PK+ L+ L L NN F KIP L L L LS+N+L IP + ++ L
Sbjct: 391 NPKNT-----LQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLR 445
Query: 595 KLNLCHNNLLGSFQQK 610
L L N L G Q+
Sbjct: 446 DLKLWLNMLEGEIPQE 461
>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase
Inhibiting Protein), A Leucine Rich Repeat Protein
Involved In Plant Defense
Length = 313
Score = 94.4 bits (233), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 97/344 (28%), Positives = 151/344 (43%), Gaps = 68/344 (19%)
Query: 7 KETFALLKWKRSLQNKNISLLSSWTLHPDNASNVPSYSKSKISPCAWLGISCN---QAGR 63
++ ALL+ K+ L N + LSSW D + WLG+ C+ Q R
Sbjct: 6 QDKQALLQIKKDLGNP--TTLSSWLPTTDCCNRT------------WLGVLCDTDTQTYR 51
Query: 64 VISINLSSMALNGTLQEFAFSSFPHLVQLNLSFNIFFGIIPPQIGNLSKLQYLDLGS-NQ 122
V +++LS + L +P IP + NL L +L +G N
Sbjct: 52 VNNLDLSGLNLP--------KPYP---------------IPSSLANLPYLNFLYIGGINN 88
Query: 123 LSGVIPPEIGHLNQLRILYFDVNQLHGSIPPEIGQLSLINVLALCHNNLYGSIPSSLGNL 182
L G IPP I L QL LY + G+IP + Q+ + L +N L G++P S+ +L
Sbjct: 89 LVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSL 148
Query: 183 SNLANFYFNNNSLFDSIPLVLGNLNSL-STMDLSQNQFXXXXXXXXXXXXXXXXXXXXXX 241
NL F+ N + +IP G+ + L ++M +S+N+
Sbjct: 149 PNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNR----------------------- 185
Query: 242 XFSGSIPSIIGNLKSLLQLDLSENQLIGSIPLSFGNLSRLTLMSLFNNLLSGSLPPILGN 301
+G IP NL +L +DLS N L G + FG+ + L N L+ L + G
Sbjct: 186 -LTGKIPPTFANL-NLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKV-GL 242
Query: 302 LKSLSALGLHINQLSGVIPSSIGNLSSLRALYLYNNGLCGFVPE 345
K+L+ L L N++ G +P + L L +L + N LCG +P+
Sbjct: 243 SKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ 286
Score = 89.0 bits (219), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 74/236 (31%), Positives = 126/236 (53%), Gaps = 8/236 (3%)
Query: 295 LPPILGNLKSLSALGLH-INQLSGVIPSSIGNLSSLRALYLYNNGLCGFVPEEIRYLKSL 353
+P L NL L+ L + IN L G IP +I L+ L LY+ + + G +P+ + +K+L
Sbjct: 68 IPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTL 127
Query: 354 SELELCKNHLSGVIPHSIGNLTGLLLLNMCENHLSGPIPKSFKNLTSV-ERVLLNQNNLS 412
L+ N LSG +P SI +L L+ + N +SG IP S+ + + + + +++N L+
Sbjct: 128 VTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLT 187
Query: 413 GKVYEAFGDHPNLTFLNLSQNNFCGEISFNWRNFPKLGTFIVSVNNISGSIPPEIGDSPK 472
GK+ F + NL F++LS+N G+ S + + ++ N+++ + ++G S
Sbjct: 188 GKIPPTFANL-NLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDL-GKVGLSKN 245
Query: 473 LQVLDLSSNSIVGEIPVQLGKLFSLNKLILNLNQLSGGMPLELGSLTELQYLDLSA 528
L LDL +N I G +P L +L L+ L ++ N L G +P LQ D+SA
Sbjct: 246 LNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG----GNLQRFDVSA 297
Score = 77.0 bits (188), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 70/220 (31%), Positives = 103/220 (46%), Gaps = 4/220 (1%)
Query: 367 IPHSIGNLTGLLLLNMCE-NHLSGPIPKSFKNLTSVERVLLNQNNLSGKVYEAFGDHPNL 425
IP S+ NL L L + N+L GPIP + LT + + + N+SG + + L
Sbjct: 68 IPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTL 127
Query: 426 TFLNLSQNNFCGEISFNWRNFPKLGTFIVSVNNISGSIPPEIGDSPKL-QVLDLSSNSIV 484
L+ S N G + + + P L N ISG+IP G KL + +S N +
Sbjct: 128 VTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLT 187
Query: 485 GEIPVQLGKLFSLNKLILNLNQLSGGMPLELGSLTELQYLDLSANKLKSSIPKSIGNLLR 544
G+IP L +L + L+ N L G + GS Q + L+ N L + K +G
Sbjct: 188 GKIPPTFANL-NLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKN 245
Query: 545 LRYLDLSNNQFGHKIPIELEKLIHLSELDLSYNFLGEEIP 584
L LDL NN+ +P L +L L L++S+N L EIP
Sbjct: 246 LNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIP 285
Score = 71.2 bits (173), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 67/225 (29%), Positives = 102/225 (45%), Gaps = 10/225 (4%)
Query: 390 PIPKSFKNLTSVERVLLNQ-NNLSGKVYEAFGDHPNLTFLNLSQNNFCGEISFNWRNFPK 448
PIP S NL + + + NNL G + A L +L ++ N G I
Sbjct: 67 PIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKT 126
Query: 449 LGTFIVSVNNISGSIPPEIGDSPKLQVLDLSSNSIVGEIPVQLG---KLFSLNKLILNLN 505
L T S N +SG++PP I P L + N I G IP G KLF+ + ++ N
Sbjct: 127 LVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFT--SMTISRN 184
Query: 506 QLSGGMPLELGSLTELQYLDLSANKLKSSIPKSIGNLLRLRYLDLSNNQFGHKI-PIELE 564
+L+G +P +L L ++DLS N L+ G+ + + L+ N + + L
Sbjct: 185 RLTGKIPPTFANL-NLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLS 243
Query: 565 KLIHLSELDLSYNFLGEEIPFQICNVKSLEKLNLCHNNLLGSFQQ 609
K +L+ LDL N + +P + +K L LN+ NNL G Q
Sbjct: 244 K--NLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ 286
>pdb|2OMX|A Chain A, Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX
Length = 462
Score = 62.4 bits (150), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 93/306 (30%), Positives = 136/306 (44%), Gaps = 51/306 (16%)
Query: 299 LGNLKSLSALGLHINQLSGVIPSSIGNLSSLRALYLYNNGLCGFVPEEIRYLKSLSELEL 358
L + +L A L I + GV L++L + NN L P ++ L L ++ +
Sbjct: 40 LDQVTTLQADRLGIKSIDGV-----EYLNNLTQINFSNNQLTDITP--LKNLTKLVDILM 92
Query: 359 CKNHLSGVIP-HSIGNLTGLLLLNMCENHLSGPIPKSFKNLTSVERVLLNQNNLSGKVYE 417
N ++ + P ++ NLTGL L N N ++ P KNLT++ R+ L+ N +S
Sbjct: 93 NNNQIADITPLANLTNLTGLTLFN---NQITDIDP--LKNLTNLNRLELSSNTISD--IS 145
Query: 418 AFGDHPNLTFLNLSQNNFCGEISFNWRNFPKLGTFIVSVNNISGSIPPEIGDSPKLQVLD 477
A +L LN S N + + L T L+ LD
Sbjct: 146 ALSGLTSLQQLNFSSNQVT-----DLKPLANLTT---------------------LERLD 179
Query: 478 LSSNSIVGEIPVQLGKLFSLNKLILNLNQLSGGMPLELGSLTELQYLDLSANKLKSSIPK 537
+SSN V +I V L KL +L LI NQ+S PL G LT L L L+ N+LK
Sbjct: 180 ISSNK-VSDISV-LAKLTNLESLIATNNQISDITPL--GILTNLDELSLNGNQLKD--IG 233
Query: 538 SIGNLLRLRYLDLSNNQFGHKIPIELEKLIHLSELDLSYNFLGEEIPFQICNVKSLEKLN 597
++ +L L LDL+NNQ + P L L L+EL L N + P + + +L L
Sbjct: 234 TLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGLTALTNLE 289
Query: 598 LCHNNL 603
L N L
Sbjct: 290 LNENQL 295
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 85/307 (27%), Positives = 139/307 (45%), Gaps = 53/307 (17%)
Query: 82 AFSSFPHLVQLNLSFNIFFGIIPPQIGNLSKLQYLDLGSNQLSGVIPPEIGHLNQLRILY 141
A S L QLN S N + P + NL+ L+ LD+ SN++S + + L L L
Sbjct: 146 ALSGLTSLQQLNFSSNQVTDLKP--LANLTTLERLDISSNKVSDI--SVLAKLTNLESLI 201
Query: 142 FDVNQLHGSIPPEIGQLSLINVLALCHNNLYGSIPSSLGNLSNLANFYFNNNSLFDSIPL 201
NQ+ P +G L+ ++ L+L N L +L +L+NL + NN + + P
Sbjct: 202 ATNNQISDITP--LGILTNLDELSLNGNQLKD--IGTLASLTNLTDLDLANNQISNLAP- 256
Query: 202 VLGNLNSLSTMDLSQNQFXXXXXXXXXXXXXXXXXXXXXXXFSGSIPSIIGNLKSLLQLD 261
L L L+ + L NQ S + L +L L+
Sbjct: 257 -LSGLTKLTELKLGANQISNI--------------------------SPLAGLTALTNLE 289
Query: 262 LSENQLIGSIPLSFGNLSRLTLMSLFNNLLSGSLPPILGNLKSLSALGLHINQLSGVIPS 321
L+ENQL P+S NL LT ++L+ N +S P + +L L L + N++S V S
Sbjct: 290 LNENQLEDISPIS--NLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDV--S 343
Query: 322 SIGNLSSLRALYLYNNGLCGFVPEEIRYLKSLSELELCK--------NHLSGV-IPHSIG 372
S+ NL+++ L +N + P + L +++L L N+ + V IP+++
Sbjct: 344 SLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTNAPVNYKANVSIPNTVK 401
Query: 373 NLTGLLL 379
N+TG L+
Sbjct: 402 NVTGALI 408
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 106/393 (26%), Positives = 161/393 (40%), Gaps = 76/393 (19%)
Query: 182 LSNLANFYFNNNSLFDSIPLVLGNLNSLSTMDLSQNQFXXXXXXXXXXXXXXXXXXXXXX 241
L+NL F+NN L D PL
Sbjct: 62 LNNLTQINFSNNQLTDITPL---------------------------------------- 81
Query: 242 XFSGSIPSIIGNLKSLLQLDLSENQLIGSIPLSFGNLSRLTLMSLFNNLLSGSLPPILGN 301
NL L+ + ++ NQ+ PL NL+ LT ++LFNN ++ P L N
Sbjct: 82 ----------KNLTKLVDILMNNNQIADITPL--ANLTNLTGLTLFNNQITDIDP--LKN 127
Query: 302 LKSLSALGLHINQLSGVIPSSIGNLSSLRALYLYNNGLCGFVPEEIRYLKSLSELELCKN 361
L +L+ L L N +S + S++ L+SL+ L +N + P + L +L L++ N
Sbjct: 128 LTNLNRLELSSNTISDI--SALSGLTSLQQLNFSSNQVTDLKP--LANLTTLERLDISSN 183
Query: 362 HLSGVIPHSIGNLTGLLLLNMCENHLSGPIPKSFKNLTSVERVLLNQNNLSGKVYEAFGD 421
+S + + LT L L N +S P LT+++ + LN N L K
Sbjct: 184 KVSDI--SVLAKLTNLESLIATNNQISDITPLGI--LTNLDELSLNGNQL--KDIGTLAS 237
Query: 422 HPNLTFLNLSQNNFCGEISFNWRNFPKLGTFIVSVNNISGSIPPEIGDSPKLQVLDLSSN 481
NLT L+L+ N KL + N IS +I P G + L L+L+ N
Sbjct: 238 LTNLTDLDLANNQISNLAPL--SGLTKLTELKLGANQIS-NISPLAGLT-ALTNLELNEN 293
Query: 482 SIVGEIPVQLGKLFSLNKLILNLNQLSGGMPLELGSLTELQYLDLSANKLKSSIPKSIGN 541
+ P+ L +L L L N +S P + SLT+LQ L NK+ S S+ N
Sbjct: 294 QLEDISPI--SNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKV--SDVSSLAN 347
Query: 542 LLRLRYLDLSNNQFGHKIPIELEKLIHLSELDL 574
L + +L +NQ P L L +++L L
Sbjct: 348 LTNINWLSAGHNQISDLTP--LANLTRITQLGL 378
Score = 42.4 bits (98), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 50/149 (33%), Positives = 73/149 (48%), Gaps = 11/149 (7%)
Query: 65 ISINLSSMALNGT-LQEF-AFSSFPHLVQLNLSFNIFFGIIPPQIGNLSKLQYLDLGSNQ 122
I NL ++LNG L++ +S +L L+L+ N + P + L+KL L LG+NQ
Sbjct: 215 ILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQ 272
Query: 123 LSGVIPPEIGHLNQLRILYFDVNQLHGSIPPEIGQLSLINVLALCHNNLYGSIPSSLGNL 182
+S + P + L L L + NQL P I L + L L NN+ P S +L
Sbjct: 273 ISNISP--LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISPVS--SL 326
Query: 183 SNLANFYFNNNSLFDSIPLV-LGNLNSLS 210
+ L +F NN + D L L N+N LS
Sbjct: 327 TKLQRLFFYNNKVSDVSSLANLTNINWLS 355
>pdb|2OMT|A Chain A, Crystal Structure Of Inla G194s+sHEC1 COMPLEX
Length = 462
Score = 62.0 bits (149), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 81/259 (31%), Positives = 123/259 (47%), Gaps = 20/259 (7%)
Query: 345 EEIRYLKSLSELELCKNHLSGVIPHSIGNLTGLLLLNMCENHLSGPIPKSFKNLTSVERV 404
+ + YL +L+++ N L+ + P + NLT L+ + M N ++ P NLT++ +
Sbjct: 57 DGVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGL 112
Query: 405 LLNQNNLSGKVYEAFGDHPNLTFLNLSQNNFCGEISFNWRNFPKLGTFIVSVNNISGSIP 464
L N ++ + + NL L LS N +IS L S N ++ P
Sbjct: 113 TLFNNQITD--IDPLKNLTNLNRLELSSNTIS-DISA-LSGLTSLQQLSFSSNQVTDLKP 168
Query: 465 PEIGDSPKLQVLDLSSNSIVGEIPVQLGKLFSLNKLILNLNQLSGGMPLELGSLTELQYL 524
+ + L+ LD+SSN V +I V L KL +L LI NQ+S PL G LT L L
Sbjct: 169 --LANLTTLERLDISSNK-VSDISV-LAKLTNLESLIATNNQISDITPL--GILTNLDEL 222
Query: 525 DLSANKLKSSIPKSIGNLLRLRYLDLSNNQFGHKIPIELEKLIHLSELDLSYNFLGEEIP 584
L+ N+LK ++ +L L LDL+NNQ + P L L L+EL L N + P
Sbjct: 223 SLNGNQLKD--IGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP 278
Query: 585 FQICNVKSLEKLNLCHNNL 603
+ + +L L L N L
Sbjct: 279 --LAGLTALTNLELNENQL 295
Score = 52.8 bits (125), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 84/307 (27%), Positives = 139/307 (45%), Gaps = 53/307 (17%)
Query: 82 AFSSFPHLVQLNLSFNIFFGIIPPQIGNLSKLQYLDLGSNQLSGVIPPEIGHLNQLRILY 141
A S L QL+ S N + P + NL+ L+ LD+ SN++S + + L L L
Sbjct: 146 ALSGLTSLQQLSFSSNQVTDLKP--LANLTTLERLDISSNKVSDI--SVLAKLTNLESLI 201
Query: 142 FDVNQLHGSIPPEIGQLSLINVLALCHNNLYGSIPSSLGNLSNLANFYFNNNSLFDSIPL 201
NQ+ P +G L+ ++ L+L N L +L +L+NL + NN + + P
Sbjct: 202 ATNNQISDITP--LGILTNLDELSLNGNQLKD--IGTLASLTNLTDLDLANNQISNLAP- 256
Query: 202 VLGNLNSLSTMDLSQNQFXXXXXXXXXXXXXXXXXXXXXXXFSGSIPSIIGNLKSLLQLD 261
L L L+ + L NQ S + L +L L+
Sbjct: 257 -LSGLTKLTELKLGANQISNI--------------------------SPLAGLTALTNLE 289
Query: 262 LSENQLIGSIPLSFGNLSRLTLMSLFNNLLSGSLPPILGNLKSLSALGLHINQLSGVIPS 321
L+ENQL P+S NL LT ++L+ N +S P + +L L L + N++S V S
Sbjct: 290 LNENQLEDISPIS--NLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDV--S 343
Query: 322 SIGNLSSLRALYLYNNGLCGFVPEEIRYLKSLSELELCK--------NHLSGV-IPHSIG 372
S+ NL+++ L +N + P + L +++L L N+ + V IP+++
Sbjct: 344 SLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTNAPVNYKANVSIPNTVK 401
Query: 373 NLTGLLL 379
N+TG L+
Sbjct: 402 NVTGALI 408
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 106/393 (26%), Positives = 161/393 (40%), Gaps = 76/393 (19%)
Query: 182 LSNLANFYFNNNSLFDSIPLVLGNLNSLSTMDLSQNQFXXXXXXXXXXXXXXXXXXXXXX 241
L+NL F+NN L D PL
Sbjct: 62 LNNLTQINFSNNQLTDITPL---------------------------------------- 81
Query: 242 XFSGSIPSIIGNLKSLLQLDLSENQLIGSIPLSFGNLSRLTLMSLFNNLLSGSLPPILGN 301
NL L+ + ++ NQ+ PL NL+ LT ++LFNN ++ P L N
Sbjct: 82 ----------KNLTKLVDILMNNNQIADITPL--ANLTNLTGLTLFNNQITDIDP--LKN 127
Query: 302 LKSLSALGLHINQLSGVIPSSIGNLSSLRALYLYNNGLCGFVPEEIRYLKSLSELELCKN 361
L +L+ L L N +S + S++ L+SL+ L +N + P + L +L L++ N
Sbjct: 128 LTNLNRLELSSNTISDI--SALSGLTSLQQLSFSSNQVTDLKP--LANLTTLERLDISSN 183
Query: 362 HLSGVIPHSIGNLTGLLLLNMCENHLSGPIPKSFKNLTSVERVLLNQNNLSGKVYEAFGD 421
+S + + LT L L N +S P LT+++ + LN N L K
Sbjct: 184 KVSDI--SVLAKLTNLESLIATNNQISDITPLGI--LTNLDELSLNGNQL--KDIGTLAS 237
Query: 422 HPNLTFLNLSQNNFCGEISFNWRNFPKLGTFIVSVNNISGSIPPEIGDSPKLQVLDLSSN 481
NLT L+L+ N KL + N IS +I P G + L L+L+ N
Sbjct: 238 LTNLTDLDLANNQISNLAPL--SGLTKLTELKLGANQIS-NISPLAGLT-ALTNLELNEN 293
Query: 482 SIVGEIPVQLGKLFSLNKLILNLNQLSGGMPLELGSLTELQYLDLSANKLKSSIPKSIGN 541
+ P+ L +L L L N +S P + SLT+LQ L NK+ S S+ N
Sbjct: 294 QLEDISPI--SNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKV--SDVSSLAN 347
Query: 542 LLRLRYLDLSNNQFGHKIPIELEKLIHLSELDL 574
L + +L +NQ P L L +++L L
Sbjct: 348 LTNINWLSAGHNQISDLTP--LANLTRITQLGL 378
Score = 42.4 bits (98), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 50/149 (33%), Positives = 73/149 (48%), Gaps = 11/149 (7%)
Query: 65 ISINLSSMALNGT-LQEF-AFSSFPHLVQLNLSFNIFFGIIPPQIGNLSKLQYLDLGSNQ 122
I NL ++LNG L++ +S +L L+L+ N + P + L+KL L LG+NQ
Sbjct: 215 ILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQ 272
Query: 123 LSGVIPPEIGHLNQLRILYFDVNQLHGSIPPEIGQLSLINVLALCHNNLYGSIPSSLGNL 182
+S + P + L L L + NQL P I L + L L NN+ P S +L
Sbjct: 273 ISNISP--LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISPVS--SL 326
Query: 183 SNLANFYFNNNSLFDSIPLV-LGNLNSLS 210
+ L +F NN + D L L N+N LS
Sbjct: 327 TKLQRLFFYNNKVSDVSSLANLTNINWLS 355
>pdb|2OMU|A Chain A, Crystal Structure Of Inla G194s+s Y369s/hec1 Complex
Length = 462
Score = 62.0 bits (149), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 81/259 (31%), Positives = 123/259 (47%), Gaps = 20/259 (7%)
Query: 345 EEIRYLKSLSELELCKNHLSGVIPHSIGNLTGLLLLNMCENHLSGPIPKSFKNLTSVERV 404
+ + YL +L+++ N L+ + P + NLT L+ + M N ++ P NLT++ +
Sbjct: 57 DGVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGL 112
Query: 405 LLNQNNLSGKVYEAFGDHPNLTFLNLSQNNFCGEISFNWRNFPKLGTFIVSVNNISGSIP 464
L N ++ + + NL L LS N +IS L S N ++ P
Sbjct: 113 TLFNNQITD--IDPLKNLTNLNRLELSSNTIS-DISA-LSGLTSLQQLSFSSNQVTDLKP 168
Query: 465 PEIGDSPKLQVLDLSSNSIVGEIPVQLGKLFSLNKLILNLNQLSGGMPLELGSLTELQYL 524
+ + L+ LD+SSN V +I V L KL +L LI NQ+S PL G LT L L
Sbjct: 169 --LANLTTLERLDISSNK-VSDISV-LAKLTNLESLIATNNQISDITPL--GILTNLDEL 222
Query: 525 DLSANKLKSSIPKSIGNLLRLRYLDLSNNQFGHKIPIELEKLIHLSELDLSYNFLGEEIP 584
L+ N+LK ++ +L L LDL+NNQ + P L L L+EL L N + P
Sbjct: 223 SLNGNQLKD--IGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP 278
Query: 585 FQICNVKSLEKLNLCHNNL 603
+ + +L L L N L
Sbjct: 279 --LAGLTALTNLELNENQL 295
Score = 53.9 bits (128), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 107/393 (27%), Positives = 161/393 (40%), Gaps = 76/393 (19%)
Query: 182 LSNLANFYFNNNSLFDSIPLVLGNLNSLSTMDLSQNQFXXXXXXXXXXXXXXXXXXXXXX 241
L+NL F+NN L D PL
Sbjct: 62 LNNLTQINFSNNQLTDITPL---------------------------------------- 81
Query: 242 XFSGSIPSIIGNLKSLLQLDLSENQLIGSIPLSFGNLSRLTLMSLFNNLLSGSLPPILGN 301
NL L+ + ++ NQ+ PL NL+ LT ++LFNN ++ P L N
Sbjct: 82 ----------KNLTKLVDILMNNNQIADITPL--ANLTNLTGLTLFNNQITDIDP--LKN 127
Query: 302 LKSLSALGLHINQLSGVIPSSIGNLSSLRALYLYNNGLCGFVPEEIRYLKSLSELELCKN 361
L +L+ L L N +S + S++ L+SL+ L +N + P + L +L L++ N
Sbjct: 128 LTNLNRLELSSNTISDI--SALSGLTSLQQLSFSSNQVTDLKP--LANLTTLERLDISSN 183
Query: 362 HLSGVIPHSIGNLTGLLLLNMCENHLSGPIPKSFKNLTSVERVLLNQNNLSGKVYEAFGD 421
+S + + LT L L N +S P LT+++ + LN N L K
Sbjct: 184 KVSDI--SVLAKLTNLESLIATNNQISDITPLGI--LTNLDELSLNGNQL--KDIGTLAS 237
Query: 422 HPNLTFLNLSQNNFCGEISFNWRNFPKLGTFIVSVNNISGSIPPEIGDSPKLQVLDLSSN 481
NLT L+L+ N KL + N IS I P G + L L+L+ N
Sbjct: 238 LTNLTDLDLANNQISNLAPL--SGLTKLTELKLGANQISN-ISPLAGLT-ALTNLELNEN 293
Query: 482 SIVGEIPVQLGKLFSLNKLILNLNQLSGGMPLELGSLTELQYLDLSANKLKSSIPKSIGN 541
+ P+ L +L L L N +S P + SLT+LQ L S NK+ S S+ N
Sbjct: 294 QLEDISPI--SNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFSNNKV--SDVSSLAN 347
Query: 542 LLRLRYLDLSNNQFGHKIPIELEKLIHLSELDL 574
L + +L +NQ P L L +++L L
Sbjct: 348 LTNINWLSAGHNQISDLTP--LANLTRITQLGL 378
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 84/307 (27%), Positives = 138/307 (44%), Gaps = 53/307 (17%)
Query: 82 AFSSFPHLVQLNLSFNIFFGIIPPQIGNLSKLQYLDLGSNQLSGVIPPEIGHLNQLRILY 141
A S L QL+ S N + P + NL+ L+ LD+ SN++S + + L L L
Sbjct: 146 ALSGLTSLQQLSFSSNQVTDLKP--LANLTTLERLDISSNKVSDI--SVLAKLTNLESLI 201
Query: 142 FDVNQLHGSIPPEIGQLSLINVLALCHNNLYGSIPSSLGNLSNLANFYFNNNSLFDSIPL 201
NQ+ P +G L+ ++ L+L N L +L +L+NL + NN + + P
Sbjct: 202 ATNNQISDITP--LGILTNLDELSLNGNQLKD--IGTLASLTNLTDLDLANNQISNLAP- 256
Query: 202 VLGNLNSLSTMDLSQNQFXXXXXXXXXXXXXXXXXXXXXXXFSGSIPSIIGNLKSLLQLD 261
L L L+ + L NQ S + L +L L+
Sbjct: 257 -LSGLTKLTELKLGANQISNI--------------------------SPLAGLTALTNLE 289
Query: 262 LSENQLIGSIPLSFGNLSRLTLMSLFNNLLSGSLPPILGNLKSLSALGLHINQLSGVIPS 321
L+ENQL P+S NL LT ++L+ N +S P + +L L L N++S V S
Sbjct: 290 LNENQLEDISPIS--NLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFSNNKVSDV--S 343
Query: 322 SIGNLSSLRALYLYNNGLCGFVPEEIRYLKSLSELELCK--------NHLSGV-IPHSIG 372
S+ NL+++ L +N + P + L +++L L N+ + V IP+++
Sbjct: 344 SLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTNAPVNYKANVSIPNTVK 401
Query: 373 NLTGLLL 379
N+TG L+
Sbjct: 402 NVTGALI 408
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 49/146 (33%), Positives = 73/146 (50%), Gaps = 11/146 (7%)
Query: 68 NLSSMALNGT-LQEF-AFSSFPHLVQLNLSFNIFFGIIPPQIGNLSKLQYLDLGSNQLSG 125
NL ++LNG L++ +S +L L+L+ N + P + L+KL L LG+NQ+S
Sbjct: 218 NLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISN 275
Query: 126 VIPPEIGHLNQLRILYFDVNQLHGSIPPEIGQLSLINVLALCHNNLYGSIPSSLGNLSNL 185
+ P + L L L + NQL P I L + L L NN+ P S +L+ L
Sbjct: 276 ISP--LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISPVS--SLTKL 329
Query: 186 ANFYFNNNSLFDSIPLV-LGNLNSLS 210
+F+NN + D L L N+N LS
Sbjct: 330 QRLFFSNNKVSDVSSLANLTNINWLS 355
>pdb|2OMV|A Chain A, Crystal Structure Of Inla S192n Y369s/hec1 Complex
pdb|2OMW|A Chain A, Crystal Structure Of Inla S192n Y369s/mec1 Complex
Length = 461
Score = 61.6 bits (148), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 92/306 (30%), Positives = 139/306 (45%), Gaps = 52/306 (16%)
Query: 299 LGNLKSLSALGLHINQLSGVIPSSIGNLSSLRALYLYNNGLCGFVPEEIRYLKSLSELEL 358
L + +L A L I + GV L++L + NN L P ++ L L ++ +
Sbjct: 40 LDQVTTLQADRLGIKSIDGV-----EYLNNLTQINFSNNQLTDITP--LKNLTKLVDILM 92
Query: 359 CKNHLSGVIP-HSIGNLTGLLLLNMCENHLSGPIPKSFKNLTSVERVLLNQNNLSGKVYE 417
N ++ + P ++ NLTGL L N N ++ P KNLT++ R+ L+ N +S +
Sbjct: 93 NNNQIADITPLANLTNLTGLTLFN---NQITDIDP--LKNLTNLNRLELSSNTIS-DISA 146
Query: 418 AFGDHPNLTFLNLSQNNFCGEISFNWRNFPKLGTFIVSVNNISGSIPPEIGDSPKLQVLD 477
G +L Q NF +++ + + L T L+ LD
Sbjct: 147 LSG------LTSLQQLNFGNQVT-DLKPLANLTT---------------------LERLD 178
Query: 478 LSSNSIVGEIPVQLGKLFSLNKLILNLNQLSGGMPLELGSLTELQYLDLSANKLKSSIPK 537
+SSN V +I V L KL +L LI NQ+S PL G LT L L L+ N+LK
Sbjct: 179 ISSNK-VSDISV-LAKLTNLESLIATNNQISDITPL--GILTNLDELSLNGNQLKD--IG 232
Query: 538 SIGNLLRLRYLDLSNNQFGHKIPIELEKLIHLSELDLSYNFLGEEIPFQICNVKSLEKLN 597
++ +L L LDL+NNQ + P L L L+EL L N + P + + +L L
Sbjct: 233 TLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGLTALTNLE 288
Query: 598 LCHNNL 603
L N L
Sbjct: 289 LNENQL 294
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 107/393 (27%), Positives = 162/393 (41%), Gaps = 77/393 (19%)
Query: 182 LSNLANFYFNNNSLFDSIPLVLGNLNSLSTMDLSQNQFXXXXXXXXXXXXXXXXXXXXXX 241
L+NL F+NN L D PL
Sbjct: 62 LNNLTQINFSNNQLTDITPL---------------------------------------- 81
Query: 242 XFSGSIPSIIGNLKSLLQLDLSENQLIGSIPLSFGNLSRLTLMSLFNNLLSGSLPPILGN 301
NL L+ + ++ NQ+ PL NL+ LT ++LFNN ++ P L N
Sbjct: 82 ----------KNLTKLVDILMNNNQIADITPL--ANLTNLTGLTLFNNQITDIDP--LKN 127
Query: 302 LKSLSALGLHINQLSGVIPSSIGNLSSLRALYLYNNGLCGFVPEEIRYLKSLSELELCKN 361
L +L+ L L N +S + S++ L+SL+ L + N + P + L +L L++ N
Sbjct: 128 LTNLNRLELSSNTISDI--SALSGLTSLQQLN-FGNQVTDLKP--LANLTTLERLDISSN 182
Query: 362 HLSGVIPHSIGNLTGLLLLNMCENHLSGPIPKSFKNLTSVERVLLNQNNLSGKVYEAFGD 421
+S + + LT L L N +S P LT+++ + LN N L K
Sbjct: 183 KVSDI--SVLAKLTNLESLIATNNQISDITPLGI--LTNLDELSLNGNQL--KDIGTLAS 236
Query: 422 HPNLTFLNLSQNNFCGEISFNWRNFPKLGTFIVSVNNISGSIPPEIGDSPKLQVLDLSSN 481
NLT L+L+ N KL + N IS +I P G + L L+L+ N
Sbjct: 237 LTNLTDLDLANNQISNLAPL--SGLTKLTELKLGANQIS-NISPLAGLT-ALTNLELNEN 292
Query: 482 SIVGEIPVQLGKLFSLNKLILNLNQLSGGMPLELGSLTELQYLDLSANKLKSSIPKSIGN 541
+ P+ L +L L L N +S P + SLT+LQ L S NK+ S S+ N
Sbjct: 293 QLEDISPI--SNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFSNNKV--SDVSSLAN 346
Query: 542 LLRLRYLDLSNNQFGHKIPIELEKLIHLSELDL 574
L + +L +NQ P L L +++L L
Sbjct: 347 LTNINWLSAGHNQISDLTP--LANLTRITQLGL 377
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 84/307 (27%), Positives = 137/307 (44%), Gaps = 54/307 (17%)
Query: 82 AFSSFPHLVQLNLSFNIFFGIIPPQIGNLSKLQYLDLGSNQLSGVIPPEIGHLNQLRILY 141
A S L QLN N + P + NL+ L+ LD+ SN++S + + L L L
Sbjct: 146 ALSGLTSLQQLNFG-NQVTDLKP--LANLTTLERLDISSNKVSDI--SVLAKLTNLESLI 200
Query: 142 FDVNQLHGSIPPEIGQLSLINVLALCHNNLYGSIPSSLGNLSNLANFYFNNNSLFDSIPL 201
NQ+ P +G L+ ++ L+L N L +L +L+NL + NN + + P
Sbjct: 201 ATNNQISDITP--LGILTNLDELSLNGNQLKD--IGTLASLTNLTDLDLANNQISNLAP- 255
Query: 202 VLGNLNSLSTMDLSQNQFXXXXXXXXXXXXXXXXXXXXXXXFSGSIPSIIGNLKSLLQLD 261
L L L+ + L NQ S + L +L L+
Sbjct: 256 -LSGLTKLTELKLGANQISNI--------------------------SPLAGLTALTNLE 288
Query: 262 LSENQLIGSIPLSFGNLSRLTLMSLFNNLLSGSLPPILGNLKSLSALGLHINQLSGVIPS 321
L+ENQL P+S NL LT ++L+ N +S P + +L L L N++S V S
Sbjct: 289 LNENQLEDISPIS--NLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFSNNKVSDV--S 342
Query: 322 SIGNLSSLRALYLYNNGLCGFVPEEIRYLKSLSELELCK--------NHLSGV-IPHSIG 372
S+ NL+++ L +N + P + L +++L L N+ + V IP+++
Sbjct: 343 SLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTNAPVNYKANVSIPNTVK 400
Query: 373 NLTGLLL 379
N+TG L+
Sbjct: 401 NVTGALI 407
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 50/149 (33%), Positives = 74/149 (49%), Gaps = 11/149 (7%)
Query: 65 ISINLSSMALNGT-LQEF-AFSSFPHLVQLNLSFNIFFGIIPPQIGNLSKLQYLDLGSNQ 122
I NL ++LNG L++ +S +L L+L+ N + P + L+KL L LG+NQ
Sbjct: 214 ILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQ 271
Query: 123 LSGVIPPEIGHLNQLRILYFDVNQLHGSIPPEIGQLSLINVLALCHNNLYGSIPSSLGNL 182
+S + P + L L L + NQL P I L + L L NN+ P S +L
Sbjct: 272 ISNISP--LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISPVS--SL 325
Query: 183 SNLANFYFNNNSLFDSIPLV-LGNLNSLS 210
+ L +F+NN + D L L N+N LS
Sbjct: 326 TKLQRLFFSNNKVSDVSSLANLTNINWLS 354
>pdb|2OMY|A Chain A, Crystal Structure Of Inla S192n/hec1 Complex
Length = 461
Score = 61.6 bits (148), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 92/306 (30%), Positives = 139/306 (45%), Gaps = 52/306 (16%)
Query: 299 LGNLKSLSALGLHINQLSGVIPSSIGNLSSLRALYLYNNGLCGFVPEEIRYLKSLSELEL 358
L + +L A L I + GV L++L + NN L P ++ L L ++ +
Sbjct: 40 LDQVTTLQADRLGIKSIDGV-----EYLNNLTQINFSNNQLTDITP--LKNLTKLVDILM 92
Query: 359 CKNHLSGVIP-HSIGNLTGLLLLNMCENHLSGPIPKSFKNLTSVERVLLNQNNLSGKVYE 417
N ++ + P ++ NLTGL L N N ++ P KNLT++ R+ L+ N +S +
Sbjct: 93 NNNQIADITPLANLTNLTGLTLFN---NQITDIDP--LKNLTNLNRLELSSNTIS-DISA 146
Query: 418 AFGDHPNLTFLNLSQNNFCGEISFNWRNFPKLGTFIVSVNNISGSIPPEIGDSPKLQVLD 477
G +L Q NF +++ + + L T L+ LD
Sbjct: 147 LSG------LTSLQQLNFGNQVT-DLKPLANLTT---------------------LERLD 178
Query: 478 LSSNSIVGEIPVQLGKLFSLNKLILNLNQLSGGMPLELGSLTELQYLDLSANKLKSSIPK 537
+SSN V +I V L KL +L LI NQ+S PL G LT L L L+ N+LK
Sbjct: 179 ISSNK-VSDISV-LAKLTNLESLIATNNQISDITPL--GILTNLDELSLNGNQLKD--IG 232
Query: 538 SIGNLLRLRYLDLSNNQFGHKIPIELEKLIHLSELDLSYNFLGEEIPFQICNVKSLEKLN 597
++ +L L LDL+NNQ + P L L L+EL L N + P + + +L L
Sbjct: 233 TLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGLTALTNLE 288
Query: 598 LCHNNL 603
L N L
Sbjct: 289 LNENQL 294
Score = 49.3 bits (116), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 84/307 (27%), Positives = 138/307 (44%), Gaps = 54/307 (17%)
Query: 82 AFSSFPHLVQLNLSFNIFFGIIPPQIGNLSKLQYLDLGSNQLSGVIPPEIGHLNQLRILY 141
A S L QLN N + P + NL+ L+ LD+ SN++S + + L L L
Sbjct: 146 ALSGLTSLQQLNFG-NQVTDLKP--LANLTTLERLDISSNKVSDI--SVLAKLTNLESLI 200
Query: 142 FDVNQLHGSIPPEIGQLSLINVLALCHNNLYGSIPSSLGNLSNLANFYFNNNSLFDSIPL 201
NQ+ P +G L+ ++ L+L N L +L +L+NL + NN + + P
Sbjct: 201 ATNNQISDITP--LGILTNLDELSLNGNQLKD--IGTLASLTNLTDLDLANNQISNLAP- 255
Query: 202 VLGNLNSLSTMDLSQNQFXXXXXXXXXXXXXXXXXXXXXXXFSGSIPSIIGNLKSLLQLD 261
L L L+ + L NQ S + L +L L+
Sbjct: 256 -LSGLTKLTELKLGANQISNI--------------------------SPLAGLTALTNLE 288
Query: 262 LSENQLIGSIPLSFGNLSRLTLMSLFNNLLSGSLPPILGNLKSLSALGLHINQLSGVIPS 321
L+ENQL P+S NL LT ++L+ N +S P + +L L L + N++S V S
Sbjct: 289 LNENQLEDISPIS--NLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDV--S 342
Query: 322 SIGNLSSLRALYLYNNGLCGFVPEEIRYLKSLSELELCK--------NHLSGV-IPHSIG 372
S+ NL+++ L +N + P + L +++L L N+ + V IP+++
Sbjct: 343 SLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTNAPVNYKANVSIPNTVK 400
Query: 373 NLTGLLL 379
N+TG L+
Sbjct: 401 NVTGALI 407
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 106/393 (26%), Positives = 161/393 (40%), Gaps = 77/393 (19%)
Query: 182 LSNLANFYFNNNSLFDSIPLVLGNLNSLSTMDLSQNQFXXXXXXXXXXXXXXXXXXXXXX 241
L+NL F+NN L D PL
Sbjct: 62 LNNLTQINFSNNQLTDITPL---------------------------------------- 81
Query: 242 XFSGSIPSIIGNLKSLLQLDLSENQLIGSIPLSFGNLSRLTLMSLFNNLLSGSLPPILGN 301
NL L+ + ++ NQ+ PL NL+ LT ++LFNN ++ P L N
Sbjct: 82 ----------KNLTKLVDILMNNNQIADITPL--ANLTNLTGLTLFNNQITDIDP--LKN 127
Query: 302 LKSLSALGLHINQLSGVIPSSIGNLSSLRALYLYNNGLCGFVPEEIRYLKSLSELELCKN 361
L +L+ L L N +S + S++ L+SL+ L + N + P + L +L L++ N
Sbjct: 128 LTNLNRLELSSNTISDI--SALSGLTSLQQLN-FGNQVTDLKP--LANLTTLERLDISSN 182
Query: 362 HLSGVIPHSIGNLTGLLLLNMCENHLSGPIPKSFKNLTSVERVLLNQNNLSGKVYEAFGD 421
+S + + LT L L N +S P LT+++ + LN N L K
Sbjct: 183 KVSDI--SVLAKLTNLESLIATNNQISDITPLGI--LTNLDELSLNGNQL--KDIGTLAS 236
Query: 422 HPNLTFLNLSQNNFCGEISFNWRNFPKLGTFIVSVNNISGSIPPEIGDSPKLQVLDLSSN 481
NLT L+L+ N KL + N IS +I P G + L L+L+ N
Sbjct: 237 LTNLTDLDLANNQISNLAPL--SGLTKLTELKLGANQIS-NISPLAGLT-ALTNLELNEN 292
Query: 482 SIVGEIPVQLGKLFSLNKLILNLNQLSGGMPLELGSLTELQYLDLSANKLKSSIPKSIGN 541
+ P+ L +L L L N +S P + SLT+LQ L NK+ S S+ N
Sbjct: 293 QLEDISPI--SNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKV--SDVSSLAN 346
Query: 542 LLRLRYLDLSNNQFGHKIPIELEKLIHLSELDL 574
L + +L +NQ P L L +++L L
Sbjct: 347 LTNINWLSAGHNQISDLTP--LANLTRITQLGL 377
Score = 42.4 bits (98), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 50/149 (33%), Positives = 73/149 (48%), Gaps = 11/149 (7%)
Query: 65 ISINLSSMALNGT-LQEF-AFSSFPHLVQLNLSFNIFFGIIPPQIGNLSKLQYLDLGSNQ 122
I NL ++LNG L++ +S +L L+L+ N + P + L+KL L LG+NQ
Sbjct: 214 ILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQ 271
Query: 123 LSGVIPPEIGHLNQLRILYFDVNQLHGSIPPEIGQLSLINVLALCHNNLYGSIPSSLGNL 182
+S + P + L L L + NQL P I L + L L NN+ P S +L
Sbjct: 272 ISNISP--LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISPVS--SL 325
Query: 183 SNLANFYFNNNSLFDSIPLV-LGNLNSLS 210
+ L +F NN + D L L N+N LS
Sbjct: 326 TKLQRLFFYNNKVSDVSSLANLTNINWLS 354
>pdb|4FMZ|A Chain A, Crystal Structure Of An Internalin (Inlf) From Listeria
Monocytogenes Str. 4b F2365 At 1.91 A Resolution
pdb|4FMZ|B Chain B, Crystal Structure Of An Internalin (Inlf) From Listeria
Monocytogenes Str. 4b F2365 At 1.91 A Resolution
Length = 347
Score = 60.5 bits (145), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 84/327 (25%), Positives = 141/327 (43%), Gaps = 67/327 (20%)
Query: 110 LSKLQYLDLGSNQLSGVIPPEIGHLNQLRILYFDVNQLHGSIPPEIGQLSLINVLALCHN 169
L+ L+YL+L NQ++ + P + +L +L LY N++
Sbjct: 65 LTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKITD-------------------- 102
Query: 170 NLYGSIPSSLGNLSNLANFYFNNNSLFDSIPLVLGNLNSLSTMDLSQNQFXXXXXXXXXX 229
S+L NL+NL Y N +++ D PL NL +++L N
Sbjct: 103 ------ISALQNLTNLRELYLNEDNISDISPL--ANLTKXYSLNLGANH----------- 143
Query: 230 XXXXXXXXXXXXXFSGSIPSIIGNLKSLLQLDLSENQLIGSIPLSFGNLSRLTLMSLFNN 289
S P + N L L ++E+++ P++ NL+ L +SL N
Sbjct: 144 ------------NLSDLSP--LSNXTGLNYLTVTESKVKDVTPIA--NLTDLYSLSLNYN 187
Query: 290 LLSGSLPPILGNLKSLSALGLHINQLSGVIPSSIGNLSSLRALYLYNNGLCGFVPEEIRY 349
+ P L +L SL ++NQ++ + P + N + L +L + NN + P +
Sbjct: 188 QIEDISP--LASLTSLHYFTAYVNQITDITP--VANXTRLNSLKIGNNKITDLSP--LAN 241
Query: 350 LKSLSELELCKNHLSGVIPHSIGNLTGLLLLNMCENHLSGPIPKSFKNLTSVERVLLNQN 409
L L+ LE+ N +S + +++ +LT L LN+ N +S NL+ + + LN N
Sbjct: 242 LSQLTWLEIGTNQISDI--NAVKDLTKLKXLNVGSNQISDI--SVLNNLSQLNSLFLNNN 297
Query: 410 NLSGKVYEAFGDHPNLTFLNLSQNNFC 436
L + E G NLT L LSQN+
Sbjct: 298 QLGNEDXEVIGGLTNLTTLFLSQNHIT 324
Score = 45.8 bits (107), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 79/288 (27%), Positives = 129/288 (44%), Gaps = 43/288 (14%)
Query: 299 LGNLKSLSALGLHINQLSGVIPSSIGNLSSLRALYLYNNGLCGFVPEEIRYLKSLSELEL 358
L NL L+ L + N+++ + S++ NL++LR LYL + + P + L L L
Sbjct: 84 LSNLVKLTNLYIGTNKITDI--SALQNLTNLRELYLNEDNISDISP--LANLTKXYSLNL 139
Query: 359 CKNH-LSGVIPHSIGNLTGLLLLNMCENHLSGPIPKSFKNLTSVERVLLNQNNLSGKVYE 417
NH LS + P + N TGL L + E+ + P NLT + + LN N + E
Sbjct: 140 GANHNLSDLSP--LSNXTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQI-----E 190
Query: 418 AFGDHPNLTFLNLSQNNFCGEISFNWRNFPKLGTFIVSVNNISGSIPPEIGDSPKLQVLD 477
+LT L+ F VN I+ P + + +L L
Sbjct: 191 DISPLASLTSLHY---------------------FTAYVNQITDITP--VANXTRLNSLK 227
Query: 478 LSSNSIVGEIPVQLGKLFSLNKLILNLNQLSGGMPLELGSLTELQYLDLSANKLKSSIPK 537
+ +N I P L L L L + NQ+S ++ LT+L+ L++ +N++ S
Sbjct: 228 IGNNKITDLSP--LANLSQLTWLEIGTNQISDINAVK--DLTKLKXLNVGSNQI--SDIS 281
Query: 538 SIGNLLRLRYLDLSNNQFGHKIPIELEKLIHLSELDLSYNFLGEEIPF 585
+ NL +L L L+NNQ G++ + L +L+ L LS N + + P
Sbjct: 282 VLNNLSQLNSLFLNNNQLGNEDXEVIGGLTNLTTLFLSQNHITDIRPL 329
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 76/285 (26%), Positives = 125/285 (43%), Gaps = 23/285 (8%)
Query: 86 FPHLVQLNLSFNIFFGIIPPQIGNLSKLQYLDLGSNQLSGVIPPEIGHLNQLRILYFDVN 145
+L LNL+ N I P + NL KL L +G+N+++ + + +L LR LY + +
Sbjct: 65 LTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKITDI--SALQNLTNLRELYLNED 120
Query: 146 QLHGSIPPEIGQLSLINVLALCHNNLYGSIPSSLGNLSNLANFYFNNNSLFDSIPLVLGN 205
+ P + L+ L L N+ + S L N + L + + D P+ N
Sbjct: 121 NISDISP--LANLTKXYSLNLGANHNLSDL-SPLSNXTGLNYLTVTESKVKDVTPI--AN 175
Query: 206 LNSLSTMDLSQNQFXXXXXXXXXXXXXXXXXXXXXXXFSGSIPSI--IGNLKSLLQLDLS 263
L L ++ L+ NQ + I I + N L L +
Sbjct: 176 LTDLYSLSLNYNQIEDISPLASLTSLHYFTA------YVNQITDITPVANXTRLNSLKIG 229
Query: 264 ENQLIGSIPLSFGNLSRLTLMSLFNNLLSGSLPPILGNLKSLSALGLHINQLSGVIPSSI 323
N++ PL+ NLS+LT + + N +S + +L L L + NQ+S + S +
Sbjct: 230 NNKITDLSPLA--NLSQLTWLEIGTNQISD--INAVKDLTKLKXLNVGSNQISDI--SVL 283
Query: 324 GNLSSLRALYLYNNGLCGFVPEEIRYLKSLSELELCKNHLSGVIP 368
NLS L +L+L NN L E I L +L+ L L +NH++ + P
Sbjct: 284 NNLSQLNSLFLNNNQLGNEDXEVIGGLTNLTTLFLSQNHITDIRP 328
Score = 37.7 bits (86), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 50/96 (52%), Gaps = 4/96 (4%)
Query: 107 IGNLSKLQYLDLGSNQLSGVIPPEIGHLNQLRILYFDVNQLHGSIPPEIGQLSLINVLAL 166
+ NLS+L +L++G+NQ+S + + L +L+ L NQ+ S + LS +N L L
Sbjct: 239 LANLSQLTWLEIGTNQISDI--NAVKDLTKLKXLNVGSNQI--SDISVLNNLSQLNSLFL 294
Query: 167 CHNNLYGSIPSSLGNLSNLANFYFNNNSLFDSIPLV 202
+N L +G L+NL + + N + D PL
Sbjct: 295 NNNQLGNEDXEVIGGLTNLTTLFLSQNHITDIRPLA 330
>pdb|2OMZ|A Chain A, Crystal Structure Of Inla Y369a/hec1 Complex
Length = 466
Score = 58.9 bits (141), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 80/265 (30%), Positives = 122/265 (46%), Gaps = 33/265 (12%)
Query: 345 EEIRYLKSLSELELCKNHLSGVIPHSIGNLTGLLLLNMCENHLSGPIPKSFKNLTSVERV 404
+ + YL +L+++ N L+ + P + NLT L+ + M N ++ P NLT++ +
Sbjct: 61 DGVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGL 116
Query: 405 LLNQNNLSGKVYEAFGDHPNLTFLNLSQNN------FCGEISFNWRNFPKLGTFIVSVNN 458
L N ++ + + NL L LS N G S +F T + + N
Sbjct: 117 TLFNNQITD--IDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLAN 174
Query: 459 ISGSIPPEIGDSPKLQVLDLSSNSIVGEIPVQLGKLFSLNKLILNLNQLSGGMPLELGSL 518
++ L+ LD+SSN V +I V L KL +L LI NQ+S PL G L
Sbjct: 175 LT-----------TLERLDISSNK-VSDISV-LAKLTNLESLIATNNQISDITPL--GIL 219
Query: 519 TELQYLDLSANKLKSSIPKSIGNLLRLRYLDLSNNQFGHKIPIELEKLIHLSELDLSYNF 578
T L L L+ N+LK ++ +L L LDL+NNQ + P L L L+EL L N
Sbjct: 220 TNLDELSLNGNQLKD--IGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQ 275
Query: 579 LGEEIPFQICNVKSLEKLNLCHNNL 603
+ P + + +L L L N L
Sbjct: 276 ISNISP--LAGLTALTNLELNENQL 298
Score = 49.7 bits (117), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 106/393 (26%), Positives = 163/393 (41%), Gaps = 77/393 (19%)
Query: 182 LSNLANFYFNNNSLFDSIPLVLGNLNSLSTMDLSQNQFXXXXXXXXXXXXXXXXXXXXXX 241
L+NL F+NN L D PL
Sbjct: 66 LNNLTQINFSNNQLTDITPL---------------------------------------- 85
Query: 242 XFSGSIPSIIGNLKSLLQLDLSENQLIGSIPLSFGNLSRLTLMSLFNNLLSGSLPPILGN 301
NL L+ + ++ NQ+ PL+ NL+ LT ++LFNN ++ P L N
Sbjct: 86 ----------KNLTKLVDILMNNNQIADITPLA--NLTNLTGLTLFNNQITDIDP--LKN 131
Query: 302 LKSLSALGLHINQLSGVIPSSIGNLSSLRALYLYNNGLCGFVPEEIRYLKSLSELELCKN 361
L +L+ L L N +S + S++ L+SL+ L + N + P + L +L L++ N
Sbjct: 132 LTNLNRLELSSNTISDI--SALSGLTSLQQLS-FGNQVTDLKP--LANLTTLERLDISSN 186
Query: 362 HLSGVIPHSIGNLTGLLLLNMCENHLSGPIPKSFKNLTSVERVLLNQNNLSGKVYEAFGD 421
+S + + LT L L N +S P LT+++ + LN N L K
Sbjct: 187 KVSDI--SVLAKLTNLESLIATNNQISDITPLGI--LTNLDELSLNGNQL--KDIGTLAS 240
Query: 422 HPNLTFLNLSQNNFCGEISFNWRNFPKLGTFIVSVNNISGSIPPEIGDSPKLQVLDLSSN 481
NLT L+L+ N KL + N IS +I P G + L L+L+ N
Sbjct: 241 LTNLTDLDLANNQISNLAPL--SGLTKLTELKLGANQIS-NISPLAGLT-ALTNLELNEN 296
Query: 482 SIVGEIPVQLGKLFSLNKLILNLNQLSGGMPLELGSLTELQYLDLSANKLKSSIPKSIGN 541
+ P+ L +L L L N +S P + SLT+LQ L + NK+ S S+ N
Sbjct: 297 QLEDISPI--SNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFANNKV--SDVSSLAN 350
Query: 542 LLRLRYLDLSNNQFGHKIPIELEKLIHLSELDL 574
L + +L +NQ P L L +++L L
Sbjct: 351 LTNINWLSAGHNQISDLTP--LANLTRITQLGL 381
Score = 46.6 bits (109), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 84/307 (27%), Positives = 137/307 (44%), Gaps = 54/307 (17%)
Query: 82 AFSSFPHLVQLNLSFNIFFGIIPPQIGNLSKLQYLDLGSNQLSGVIPPEIGHLNQLRILY 141
A S L QL SF + P + NL+ L+ LD+ SN++S + + L L L
Sbjct: 150 ALSGLTSLQQL--SFGNQVTDLKP-LANLTTLERLDISSNKVSDI--SVLAKLTNLESLI 204
Query: 142 FDVNQLHGSIPPEIGQLSLINVLALCHNNLYGSIPSSLGNLSNLANFYFNNNSLFDSIPL 201
NQ+ P +G L+ ++ L+L N L +L +L+NL + NN + + P
Sbjct: 205 ATNNQISDITP--LGILTNLDELSLNGNQLKD--IGTLASLTNLTDLDLANNQISNLAP- 259
Query: 202 VLGNLNSLSTMDLSQNQFXXXXXXXXXXXXXXXXXXXXXXXFSGSIPSIIGNLKSLLQLD 261
L L L+ + L NQ S + L +L L+
Sbjct: 260 -LSGLTKLTELKLGANQISNI--------------------------SPLAGLTALTNLE 292
Query: 262 LSENQLIGSIPLSFGNLSRLTLMSLFNNLLSGSLPPILGNLKSLSALGLHINQLSGVIPS 321
L+ENQL P+S NL LT ++L+ N +S P + +L L L N++S V S
Sbjct: 293 LNENQLEDISPIS--NLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFANNKVSDV--S 346
Query: 322 SIGNLSSLRALYLYNNGLCGFVPEEIRYLKSLSELELCK--------NHLSGV-IPHSIG 372
S+ NL+++ L +N + P + L +++L L N+ + V IP+++
Sbjct: 347 SLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTNAPVNYKANVSIPNTVK 404
Query: 373 NLTGLLL 379
N+TG L+
Sbjct: 405 NVTGALI 411
Score = 42.7 bits (99), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 50/149 (33%), Positives = 73/149 (48%), Gaps = 11/149 (7%)
Query: 65 ISINLSSMALNGT-LQEF-AFSSFPHLVQLNLSFNIFFGIIPPQIGNLSKLQYLDLGSNQ 122
I NL ++LNG L++ +S +L L+L+ N + P + L+KL L LG+NQ
Sbjct: 218 ILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQ 275
Query: 123 LSGVIPPEIGHLNQLRILYFDVNQLHGSIPPEIGQLSLINVLALCHNNLYGSIPSSLGNL 182
+S + P + L L L + NQL P I L + L L NN+ P S +L
Sbjct: 276 ISNISP--LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISPVS--SL 329
Query: 183 SNLANFYFNNNSLFDSIPLV-LGNLNSLS 210
+ L +F NN + D L L N+N LS
Sbjct: 330 TKLQRLFFANNKVSDVSSLANLTNINWLS 358
>pdb|1O6S|A Chain A, Internalin (Listeria Monocytogenes) E-Cadherin (Human)
Recognition Complex
pdb|1O6T|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|B Chain B, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
Length = 466
Score = 58.9 bits (141), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 80/265 (30%), Positives = 122/265 (46%), Gaps = 33/265 (12%)
Query: 345 EEIRYLKSLSELELCKNHLSGVIPHSIGNLTGLLLLNMCENHLSGPIPKSFKNLTSVERV 404
+ + YL +L+++ N L+ + P + NLT L+ + M N ++ P NLT++ +
Sbjct: 62 DGVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGL 117
Query: 405 LLNQNNLSGKVYEAFGDHPNLTFLNLSQNN------FCGEISFNWRNFPKLGTFIVSVNN 458
L N ++ + + NL L LS N G S +F T + + N
Sbjct: 118 TLFNNQITD--IDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLAN 175
Query: 459 ISGSIPPEIGDSPKLQVLDLSSNSIVGEIPVQLGKLFSLNKLILNLNQLSGGMPLELGSL 518
++ L+ LD+SSN V +I V L KL +L LI NQ+S PL G L
Sbjct: 176 LT-----------TLERLDISSNK-VSDISV-LAKLTNLESLIATNNQISDITPL--GIL 220
Query: 519 TELQYLDLSANKLKSSIPKSIGNLLRLRYLDLSNNQFGHKIPIELEKLIHLSELDLSYNF 578
T L L L+ N+LK ++ +L L LDL+NNQ + P L L L+EL L N
Sbjct: 221 TNLDELSLNGNQLKD--IGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQ 276
Query: 579 LGEEIPFQICNVKSLEKLNLCHNNL 603
+ P + + +L L L N L
Sbjct: 277 ISNISP--LAGLTALTNLELNENQL 299
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 106/393 (26%), Positives = 162/393 (41%), Gaps = 77/393 (19%)
Query: 182 LSNLANFYFNNNSLFDSIPLVLGNLNSLSTMDLSQNQFXXXXXXXXXXXXXXXXXXXXXX 241
L+NL F+NN L D PL
Sbjct: 67 LNNLTQINFSNNQLTDITPL---------------------------------------- 86
Query: 242 XFSGSIPSIIGNLKSLLQLDLSENQLIGSIPLSFGNLSRLTLMSLFNNLLSGSLPPILGN 301
NL L+ + ++ NQ+ PL+ NL+ LT ++LFNN ++ P L N
Sbjct: 87 ----------KNLTKLVDILMNNNQIADITPLA--NLTNLTGLTLFNNQITDIDP--LKN 132
Query: 302 LKSLSALGLHINQLSGVIPSSIGNLSSLRALYLYNNGLCGFVPEEIRYLKSLSELELCKN 361
L +L+ L L N +S + S++ L+SL+ L + N + P + L +L L++ N
Sbjct: 133 LTNLNRLELSSNTISDI--SALSGLTSLQQLS-FGNQVTDLKP--LANLTTLERLDISSN 187
Query: 362 HLSGVIPHSIGNLTGLLLLNMCENHLSGPIPKSFKNLTSVERVLLNQNNLSGKVYEAFGD 421
+S + + LT L L N +S P LT+++ + LN N L K
Sbjct: 188 KVSDI--SVLAKLTNLESLIATNNQISDITPLGI--LTNLDELSLNGNQL--KDIGTLAS 241
Query: 422 HPNLTFLNLSQNNFCGEISFNWRNFPKLGTFIVSVNNISGSIPPEIGDSPKLQVLDLSSN 481
NLT L+L+ N KL + N IS +I P G + L L+L+ N
Sbjct: 242 LTNLTDLDLANNQISNLAPL--SGLTKLTELKLGANQIS-NISPLAGLT-ALTNLELNEN 297
Query: 482 SIVGEIPVQLGKLFSLNKLILNLNQLSGGMPLELGSLTELQYLDLSANKLKSSIPKSIGN 541
+ P+ L +L L L N +S P + SLT+LQ L NK+ S S+ N
Sbjct: 298 QLEDISPI--SNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKV--SDVSSLAN 351
Query: 542 LLRLRYLDLSNNQFGHKIPIELEKLIHLSELDL 574
L + +L +NQ P L L +++L L
Sbjct: 352 LTNINWLSAGHNQISDLTP--LANLTRITQLGL 382
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 84/307 (27%), Positives = 138/307 (44%), Gaps = 54/307 (17%)
Query: 82 AFSSFPHLVQLNLSFNIFFGIIPPQIGNLSKLQYLDLGSNQLSGVIPPEIGHLNQLRILY 141
A S L QL SF + P + NL+ L+ LD+ SN++S + + L L L
Sbjct: 151 ALSGLTSLQQL--SFGNQVTDLKP-LANLTTLERLDISSNKVSDI--SVLAKLTNLESLI 205
Query: 142 FDVNQLHGSIPPEIGQLSLINVLALCHNNLYGSIPSSLGNLSNLANFYFNNNSLFDSIPL 201
NQ+ P +G L+ ++ L+L N L +L +L+NL + NN + + P
Sbjct: 206 ATNNQISDITP--LGILTNLDELSLNGNQLKD--IGTLASLTNLTDLDLANNQISNLAP- 260
Query: 202 VLGNLNSLSTMDLSQNQFXXXXXXXXXXXXXXXXXXXXXXXFSGSIPSIIGNLKSLLQLD 261
L L L+ + L NQ S + L +L L+
Sbjct: 261 -LSGLTKLTELKLGANQISNI--------------------------SPLAGLTALTNLE 293
Query: 262 LSENQLIGSIPLSFGNLSRLTLMSLFNNLLSGSLPPILGNLKSLSALGLHINQLSGVIPS 321
L+ENQL P+S NL LT ++L+ N +S P + +L L L + N++S V S
Sbjct: 294 LNENQLEDISPIS--NLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDV--S 347
Query: 322 SIGNLSSLRALYLYNNGLCGFVPEEIRYLKSLSELELCK--------NHLSGV-IPHSIG 372
S+ NL+++ L +N + P + L +++L L N+ + V IP+++
Sbjct: 348 SLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTNAPVNYKANVSIPNTVK 405
Query: 373 NLTGLLL 379
N+TG L+
Sbjct: 406 NVTGALI 412
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 50/149 (33%), Positives = 73/149 (48%), Gaps = 11/149 (7%)
Query: 65 ISINLSSMALNGT-LQEF-AFSSFPHLVQLNLSFNIFFGIIPPQIGNLSKLQYLDLGSNQ 122
I NL ++LNG L++ +S +L L+L+ N + P + L+KL L LG+NQ
Sbjct: 219 ILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQ 276
Query: 123 LSGVIPPEIGHLNQLRILYFDVNQLHGSIPPEIGQLSLINVLALCHNNLYGSIPSSLGNL 182
+S + P + L L L + NQL P I L + L L NN+ P S +L
Sbjct: 277 ISNISP--LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISPVS--SL 330
Query: 183 SNLANFYFNNNSLFDSIPLV-LGNLNSLS 210
+ L +F NN + D L L N+N LS
Sbjct: 331 TKLQRLFFYNNKVSDVSSLANLTNINWLS 359
>pdb|1OZN|A Chain A, 1.5a Crystal Structure Of The Nogo Receptor Ligand Binding
Domain Reveals A Convergent Recognition Scaffold
Mediating Inhibition Of Myelination
Length = 285
Score = 55.8 bits (133), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 48/157 (30%), Positives = 76/157 (48%), Gaps = 1/157 (0%)
Query: 254 LKSLLQLDLSENQLIGSI-PLSFGNLSRLTLMSLFNNLLSGSLPPILGNLKSLSALGLHI 312
L L QLDLS+N + S+ P +F L RL + L L P + L +L L L
Sbjct: 79 LALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQD 138
Query: 313 NQLSGVIPSSIGNLSSLRALYLYNNGLCGFVPEEIRYLKSLSELELCKNHLSGVIPHSIG 372
N L + + +L +L L+L+ N + R L SL L L +N ++ V PH+
Sbjct: 139 NALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFR 198
Query: 373 NLTGLLLLNMCENHLSGPIPKSFKNLTSVERVLLNQN 409
+L L+ L + N+LS ++ L +++ + LN N
Sbjct: 199 DLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDN 235
Score = 52.4 bits (124), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 53/170 (31%), Positives = 77/170 (45%), Gaps = 2/170 (1%)
Query: 268 IGSIPL-SFGNLSRLTLMSLFNNLLSGSLPPILGNLKSLSALGLHIN-QLSGVIPSSIGN 325
I +P SF LT++ L +N+L+ L L L L N QL V P++
Sbjct: 44 ISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHG 103
Query: 326 LSSLRALYLYNNGLCGFVPEEIRYLKSLSELELCKNHLSGVIPHSIGNLTGLLLLNMCEN 385
L L L+L GL P R L +L L L N L + + +L L L + N
Sbjct: 104 LGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGN 163
Query: 386 HLSGPIPKSFKNLTSVERVLLNQNNLSGKVYEAFGDHPNLTFLNLSQNNF 435
+S ++F+ L S++R+LL+QN ++ AF D L L L NN
Sbjct: 164 RISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNL 213
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 36/114 (31%), Positives = 52/114 (45%)
Query: 248 PSIIGNLKSLLQLDLSENQLIGSIPLSFGNLSRLTLMSLFNNLLSGSLPPILGNLKSLSA 307
P + L +L L L +N L +F +L LT + L N +S L SL
Sbjct: 122 PGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDR 181
Query: 308 LGLHINQLSGVIPSSIGNLSSLRALYLYNNGLCGFVPEEIRYLKSLSELELCKN 361
L LH N+++ V P + +L L LYL+ N L E + L++L L L N
Sbjct: 182 LLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDN 235
>pdb|1P8T|A Chain A, Crystal Structure Of Nogo-66 Receptor
Length = 285
Score = 55.8 bits (133), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 48/157 (30%), Positives = 76/157 (48%), Gaps = 1/157 (0%)
Query: 254 LKSLLQLDLSENQLIGSI-PLSFGNLSRLTLMSLFNNLLSGSLPPILGNLKSLSALGLHI 312
L L QLDLS+N + S+ P +F L RL + L L P + L +L L L
Sbjct: 78 LALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQD 137
Query: 313 NQLSGVIPSSIGNLSSLRALYLYNNGLCGFVPEEIRYLKSLSELELCKNHLSGVIPHSIG 372
N L + + +L +L L+L+ N + R L SL L L +N ++ V PH+
Sbjct: 138 NALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFR 197
Query: 373 NLTGLLLLNMCENHLSGPIPKSFKNLTSVERVLLNQN 409
+L L+ L + N+LS ++ L +++ + LN N
Sbjct: 198 DLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDN 234
Score = 52.4 bits (124), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 53/170 (31%), Positives = 77/170 (45%), Gaps = 2/170 (1%)
Query: 268 IGSIPL-SFGNLSRLTLMSLFNNLLSGSLPPILGNLKSLSALGLHIN-QLSGVIPSSIGN 325
I +P SF LT++ L +N+L+ L L L L N QL V P++
Sbjct: 43 ISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHG 102
Query: 326 LSSLRALYLYNNGLCGFVPEEIRYLKSLSELELCKNHLSGVIPHSIGNLTGLLLLNMCEN 385
L L L+L GL P R L +L L L N L + + +L L L + N
Sbjct: 103 LGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGN 162
Query: 386 HLSGPIPKSFKNLTSVERVLLNQNNLSGKVYEAFGDHPNLTFLNLSQNNF 435
+S ++F+ L S++R+LL+QN ++ AF D L L L NN
Sbjct: 163 RISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNL 212
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 36/114 (31%), Positives = 52/114 (45%)
Query: 248 PSIIGNLKSLLQLDLSENQLIGSIPLSFGNLSRLTLMSLFNNLLSGSLPPILGNLKSLSA 307
P + L +L L L +N L +F +L LT + L N +S L SL
Sbjct: 121 PGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDR 180
Query: 308 LGLHINQLSGVIPSSIGNLSSLRALYLYNNGLCGFVPEEIRYLKSLSELELCKN 361
L LH N+++ V P + +L L LYL+ N L E + L++L L L N
Sbjct: 181 LLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDN 234
>pdb|3KJ4|A Chain A, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
pdb|3KJ4|D Chain D, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
Length = 286
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 51/168 (30%), Positives = 78/168 (46%), Gaps = 1/168 (0%)
Query: 243 FSGSIPSIIGNLKSLLQLDLSEN-QLIGSIPLSFGNLSRLTLMSLFNNLLSGSLPPILGN 301
+G + L L QLDLS+N QL P +F L L + L L P +
Sbjct: 67 LAGIDAAAFTGLTLLEQLDLSDNAQLRVVDPTTFRGLGHLHTLHLDRCGLQELGPGLFRG 126
Query: 302 LKSLSALGLHINQLSGVIPSSIGNLSSLRALYLYNNGLCGFVPEEIRYLKSLSELELCKN 361
L +L L L N L + ++ +L +L L+L+ N + R L SL L L +N
Sbjct: 127 LAALQYLYLQDNNLQALPDNTFRDLGNLTHLFLHGNRIPSVPEHAFRGLHSLDRLLLHQN 186
Query: 362 HLSGVIPHSIGNLTGLLLLNMCENHLSGPIPKSFKNLTSVERVLLNQN 409
H++ V PH+ +L L+ L + N+LS + L S++ + LN N
Sbjct: 187 HVARVHPHAFRDLGRLMTLYLFANNLSMLPAEVLVPLRSLQYLRLNDN 234
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 51/163 (31%), Positives = 76/163 (46%), Gaps = 1/163 (0%)
Query: 274 SFGNLSRLTLMSLFNNLLSGSLPPILGNLKSLSALGLHIN-QLSGVIPSSIGNLSSLRAL 332
SF + LT++ L +N L+G L L L L N QL V P++ L L L
Sbjct: 50 SFQSCRNLTILWLHSNALAGIDAAAFTGLTLLEQLDLSDNAQLRVVDPTTFRGLGHLHTL 109
Query: 333 YLYNNGLCGFVPEEIRYLKSLSELELCKNHLSGVIPHSIGNLTGLLLLNMCENHLSGPIP 392
+L GL P R L +L L L N+L + ++ +L L L + N +
Sbjct: 110 HLDRCGLQELGPGLFRGLAALQYLYLQDNNLQALPDNTFRDLGNLTHLFLHGNRIPSVPE 169
Query: 393 KSFKNLTSVERVLLNQNNLSGKVYEAFGDHPNLTFLNLSQNNF 435
+F+ L S++R+LL+QN+++ AF D L L L NN
Sbjct: 170 HAFRGLHSLDRLLLHQNHVARVHPHAFRDLGRLMTLYLFANNL 212
Score = 48.9 bits (115), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 57/198 (28%), Positives = 87/198 (43%), Gaps = 3/198 (1%)
Query: 310 LHINQLSGVIPSSIGNLSSLRALYLYNNGLCGFVPEEIRYLKSLSELELCKN-HLSGVIP 368
LH N++S V +S + +L L+L++N L G L L +L+L N L V P
Sbjct: 38 LHGNRISYVPAASFQSCRNLTILWLHSNALAGIDAAAFTGLTLLEQLDLSDNAQLRVVDP 97
Query: 369 HSIGNLTGLLLLNMCENHLSGPIPKSFKNLTSVERVLLNQNNLSGKVYEAFGDHPNLTFL 428
+ L L L++ L P F+ L +++ + L NNL F D NLT L
Sbjct: 98 TTFRGLGHLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNNLQALPDNTFRDLGNLTHL 157
Query: 429 NLSQNNFCGEISFNWRNFPKLGTFIVSVNNISGSIPPEIGDSPKLQVLDLSSNSIVGEIP 488
L N +R L ++ N+++ P D +L L L +N++ +P
Sbjct: 158 FLHGNRIPSVPEHAFRGLHSLDRLLLHQNHVARVHPHAFRDLGRLMTLYLFANNL-SMLP 216
Query: 489 VQ-LGKLFSLNKLILNLN 505
+ L L SL L LN N
Sbjct: 217 AEVLVPLRSLQYLRLNDN 234
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 61/237 (25%), Positives = 99/237 (41%), Gaps = 12/237 (5%)
Query: 255 KSLLQLDLSENQLIGSIPLSFGNLSRLTLMSLFNNL-LSGSLPPILGNLKSLSALGLHIN 313
++L L L N L G +F L+ L + L +N L P L L L L
Sbjct: 55 RNLTILWLHSNALAGIDAAAFTGLTLLEQLDLSDNAQLRVVDPTTFRGLGHLHTLHLDRC 114
Query: 314 QLSGVIPSSIGNLSSLRALYLYNNGLCGFVPEEIRYLKSLSELELCKNHLSGVIPHSIGN 373
L + P L++L+ LYL +N L R L +L+ L L N + V H+
Sbjct: 115 GLQELGPGLFRGLAALQYLYLQDNNLQALPDNTFRDLGNLTHLFLHGNRIPSVPEHAFRG 174
Query: 374 LTGLLLLNMCENHLSGPIPKSFKNLTSVERVLLNQNNLSGKVYEAFGDHPNLTFLNLSQN 433
L L L + +NH++ P +F++L + + L NNLS E +L +L L+ N
Sbjct: 175 LHSLDRLLLHQNHVARVHPHAFRDLGRLMTLYLFANNLSMLPAEVLVPLRSLQYLRLNDN 234
Query: 434 NFCGEIS----FNWRNFPKLGTFIVSVNNISGSIPPEIG--DSPKLQVLDLSSNSIV 484
+ + + W L F S + + ++P + D +L DL ++
Sbjct: 235 PWVCDCRARPLWAW-----LQKFRGSSSEVPCNLPQRLAGRDLKRLAASDLEGCAVA 286
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 51/196 (26%), Positives = 73/196 (37%), Gaps = 2/196 (1%)
Query: 168 HNNLYGSIPS-SLGNLSNLANFYFNNNSLFDSIPLVLGNLNSLSTMDLSQN-QFXXXXXX 225
H N +P+ S + NL + ++N+L L L +DLS N Q
Sbjct: 39 HGNRISYVPAASFQSCRNLTILWLHSNALAGIDAAAFTGLTLLEQLDLSDNAQLRVVDPT 98
Query: 226 XXXXXXXXXXXXXXXXXFSGSIPSIIGNLKSLLQLDLSENQLIGSIPLSFGNLSRLTLMS 285
P + L +L L L +N L +F +L LT +
Sbjct: 99 TFRGLGHLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNNLQALPDNTFRDLGNLTHLF 158
Query: 286 LFNNLLSGSLPPILGNLKSLSALGLHINQLSGVIPSSIGNLSSLRALYLYNNGLCGFVPE 345
L N + L SL L LH N ++ V P + +L L LYL+ N L E
Sbjct: 159 LHGNRIPSVPEHAFRGLHSLDRLLLHQNHVARVHPHAFRDLGRLMTLYLFANNLSMLPAE 218
Query: 346 EIRYLKSLSELELCKN 361
+ L+SL L L N
Sbjct: 219 VLVPLRSLQYLRLNDN 234
>pdb|3M19|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
pdb|3M19|B Chain B, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
Length = 251
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 51/156 (32%), Positives = 73/156 (46%), Gaps = 7/156 (4%)
Query: 67 INLSSMALNGTLQEFAFSSFPHLVQLNLSFNIFFGIIPPQIGNLSKLQYLDLGSNQLSGV 126
++L S L TL + F L LNL +N + +L++L L L +NQL+ +
Sbjct: 40 LDLQSTGL-ATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASL 98
Query: 127 IPPEIGHLNQLRILYFDVNQLHGSIPPEI-GQLSLINVLALCHNNLYGSIPS-SLGNLSN 184
HL QL LY NQL S+P + +L+ + L L N L SIP+ + L+N
Sbjct: 99 PLGVFDHLTQLDKLYLGGNQLK-SLPSGVFDRLTKLKELRLNTNQLQ-SIPAGAFDKLTN 156
Query: 185 LANFYFNNNSLFDSIPL-VLGNLNSLSTMDLSQNQF 219
L + N L S+P L L T+ L NQF
Sbjct: 157 LQTLSLSTNQL-QSVPHGAFDRLGKLQTITLFGNQF 191
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 42/148 (28%), Positives = 62/148 (41%)
Query: 259 QLDLSENQLIGSIPLSFGNLSRLTLMSLFNNLLSGSLPPILGNLKSLSALGLHINQLSGV 318
+LDL L +F L++LT ++L N L + +L L LGL NQL+ +
Sbjct: 39 KLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASL 98
Query: 319 IPSSIGNLSSLRALYLYNNGLCGFVPEEIRYLKSLSELELCKNHLSGVIPHSIGNLTGLL 378
+L+ L LYL N L L L EL L N L + + LT L
Sbjct: 99 PLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQ 158
Query: 379 LLNMCENHLSGPIPKSFKNLTSVERVLL 406
L++ N L +F L ++ + L
Sbjct: 159 TLSLSTNQLQSVPHGAFDRLGKLQTITL 186
Score = 37.7 bits (86), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 46/157 (29%), Positives = 68/157 (43%), Gaps = 2/157 (1%)
Query: 400 SVERVLLNQNNLSGKVYEAFGDHPNLTFLNLSQNNFCGEISFNWRNFPKLGTFIVSVNNI 459
E++ L L+ F LT+LNL N + + + +LGT ++ NN
Sbjct: 36 DTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLA-NNQ 94
Query: 460 SGSIPPEIGDS-PKLQVLDLSSNSIVGEIPVQLGKLFSLNKLILNLNQLSGGMPLELGSL 518
S+P + D +L L L N + +L L +L LN NQL L
Sbjct: 95 LASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKL 154
Query: 519 TELQYLDLSANKLKSSIPKSIGNLLRLRYLDLSNNQF 555
T LQ L LS N+L+S + L +L+ + L NQF
Sbjct: 155 TNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQF 191
Score = 33.9 bits (76), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 50/191 (26%), Positives = 69/191 (36%), Gaps = 28/191 (14%)
Query: 111 SKLQYLDLGSNQLSGVIPPEIGHLNQLRILYFDVNQLHGSIPPEIGQLSLINVLALCHNN 170
+ + LDL S L+ + L +L L D NQL L+ + L L +N
Sbjct: 35 ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQ 94
Query: 171 LYGSIP-SSLGNLSNLANFYFNNNSLFDSIPLVLGNLNSLSTMDLSQNQFXXXXXXXXXX 229
L S+P +L+ L Y N L V L L + L+ NQ
Sbjct: 95 L-ASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQ--------- 144
Query: 230 XXXXXXXXXXXXXFSGSIPS-IIGNLKSLLQLDLSENQLIGSIPLSFGNLSRLTLMSLFN 288
SIP+ L +L L LS NQL +F L +L ++LF
Sbjct: 145 ----------------SIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFG 188
Query: 289 NLLSGSLPPIL 299
N S IL
Sbjct: 189 NQFDCSRCEIL 199
Score = 30.0 bits (66), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 35/93 (37%), Positives = 47/93 (50%), Gaps = 5/93 (5%)
Query: 494 LFSLNKLILNLNQLSGGMPLEL-GSLTELQYLDLSANKLKSSIPKSIGNLLRLRYLDLSN 552
L L L L NQL+ +PL + LT+L L L N+LKS L +L+ L L+
Sbjct: 82 LTELGTLGLANNQLAS-LPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNT 140
Query: 553 NQFGHKIPI-ELEKLIHLSELDLSYNFLGEEIP 584
NQ IP +KL +L L LS N L + +P
Sbjct: 141 NQL-QSIPAGAFDKLTNLQTLSLSTNQL-QSVP 171
Score = 28.9 bits (63), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 39/131 (29%), Positives = 58/131 (44%), Gaps = 9/131 (6%)
Query: 455 SVNNISGSIPPEIGDSPKLQVLDLSSNSIVGEIPVQLGKLFSLNKLILNLNQLSGGMPLE 514
S++++ IP + + LDL S + L L L L+ NQL
Sbjct: 25 SLDSVPSGIPADT------EKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGV 78
Query: 515 LGSLTELQYLDLSANKLKSSIPKSI-GNLLRLRYLDLSNNQFGHKIPIELEKLIHLSELD 573
LTEL L L+ N+L +S+P + +L +L L L NQ ++L L EL
Sbjct: 79 FDDLTELGTLGLANNQL-ASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELR 137
Query: 574 LSYNFLGEEIP 584
L+ N L + IP
Sbjct: 138 LNTNQL-QSIP 147
>pdb|3M18|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R2.1 In Complex With Hen Egg Lysozyme
Length = 251
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 51/156 (32%), Positives = 73/156 (46%), Gaps = 7/156 (4%)
Query: 67 INLSSMALNGTLQEFAFSSFPHLVQLNLSFNIFFGIIPPQIGNLSKLQYLDLGSNQLSGV 126
++L S L TL + F L LNL +N + +L++L L L +NQL+ +
Sbjct: 40 LDLQSTGL-ATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASL 98
Query: 127 IPPEIGHLNQLRILYFDVNQLHGSIPPEI-GQLSLINVLALCHNNLYGSIPS-SLGNLSN 184
HL QL LY NQL S+P + +L+ + L L N L SIP+ + L+N
Sbjct: 99 PLGVFDHLTQLDKLYLGGNQLK-SLPSGVFDRLTKLKELRLNTNQLQ-SIPAGAFDKLTN 156
Query: 185 LANFYFNNNSLFDSIPL-VLGNLNSLSTMDLSQNQF 219
L + N L S+P L L T+ L NQF
Sbjct: 157 LQTLSLSTNQL-QSVPHGAFDRLGKLQTITLFGNQF 191
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 42/148 (28%), Positives = 62/148 (41%)
Query: 259 QLDLSENQLIGSIPLSFGNLSRLTLMSLFNNLLSGSLPPILGNLKSLSALGLHINQLSGV 318
+LDL L +F L++LT ++L N L + +L L LGL NQL+ +
Sbjct: 39 KLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASL 98
Query: 319 IPSSIGNLSSLRALYLYNNGLCGFVPEEIRYLKSLSELELCKNHLSGVIPHSIGNLTGLL 378
+L+ L LYL N L L L EL L N L + + LT L
Sbjct: 99 PLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQ 158
Query: 379 LLNMCENHLSGPIPKSFKNLTSVERVLL 406
L++ N L +F L ++ + L
Sbjct: 159 TLSLSTNQLQSVPHGAFDRLGKLQTITL 186
Score = 37.7 bits (86), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 46/157 (29%), Positives = 68/157 (43%), Gaps = 2/157 (1%)
Query: 400 SVERVLLNQNNLSGKVYEAFGDHPNLTFLNLSQNNFCGEISFNWRNFPKLGTFIVSVNNI 459
E++ L L+ F LT+LNL N + + + +LGT ++ NN
Sbjct: 36 DTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLA-NNQ 94
Query: 460 SGSIPPEIGDS-PKLQVLDLSSNSIVGEIPVQLGKLFSLNKLILNLNQLSGGMPLELGSL 518
S+P + D +L L L N + +L L +L LN NQL L
Sbjct: 95 LASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKL 154
Query: 519 TELQYLDLSANKLKSSIPKSIGNLLRLRYLDLSNNQF 555
T LQ L LS N+L+S + L +L+ + L NQF
Sbjct: 155 TNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQF 191
Score = 32.0 bits (71), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 47/181 (25%), Positives = 66/181 (36%), Gaps = 28/181 (15%)
Query: 111 SKLQYLDLGSNQLSGVIPPEIGHLNQLRILYFDVNQLHGSIPPEIGQLSLINVLALCHNN 170
+ + LDL S L+ + L +L L D NQL L+ + L L +N
Sbjct: 35 ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQ 94
Query: 171 LYGSIP-SSLGNLSNLANFYFNNNSLFDSIPLVLGNLNSLSTMDLSQNQFXXXXXXXXXX 229
L S+P +L+ L Y N L V L L + L+ NQ
Sbjct: 95 L-ASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQ--------- 144
Query: 230 XXXXXXXXXXXXXFSGSIPS-IIGNLKSLLQLDLSENQLIGSIPLSFGNLSRLTLMSLFN 288
SIP+ L +L L LS NQL +F L +L ++LF
Sbjct: 145 ----------------SIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFG 188
Query: 289 N 289
N
Sbjct: 189 N 189
Score = 30.0 bits (66), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 35/93 (37%), Positives = 47/93 (50%), Gaps = 5/93 (5%)
Query: 494 LFSLNKLILNLNQLSGGMPLEL-GSLTELQYLDLSANKLKSSIPKSIGNLLRLRYLDLSN 552
L L L L NQL+ +PL + LT+L L L N+LKS L +L+ L L+
Sbjct: 82 LTELGTLGLANNQLAS-LPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNT 140
Query: 553 NQFGHKIPI-ELEKLIHLSELDLSYNFLGEEIP 584
NQ IP +KL +L L LS N L + +P
Sbjct: 141 NQL-QSIPAGAFDKLTNLQTLSLSTNQL-QSVP 171
Score = 28.9 bits (63), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 39/131 (29%), Positives = 58/131 (44%), Gaps = 9/131 (6%)
Query: 455 SVNNISGSIPPEIGDSPKLQVLDLSSNSIVGEIPVQLGKLFSLNKLILNLNQLSGGMPLE 514
S++++ IP + + LDL S + L L L L+ NQL
Sbjct: 25 SLDSVPSGIPADT------EKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGV 78
Query: 515 LGSLTELQYLDLSANKLKSSIPKSI-GNLLRLRYLDLSNNQFGHKIPIELEKLIHLSELD 573
LTEL L L+ N+L +S+P + +L +L L L NQ ++L L EL
Sbjct: 79 FDDLTELGTLGLANNQL-ASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELR 137
Query: 574 LSYNFLGEEIP 584
L+ N L + IP
Sbjct: 138 LNTNQL-QSIP 147
>pdb|3ZYN|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
pdb|3ZYN|B Chain B, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
Length = 321
Score = 46.6 bits (109), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 57/199 (28%), Positives = 83/199 (41%), Gaps = 23/199 (11%)
Query: 260 LDLSENQLIGSIPLSFGNLSRLTLMSLFNNLLSGSLPPILGNLKSLSALGLHINQLSGVI 319
L+L EN + +F +L L ++ L NL+ L SL+ L L N+L+ V
Sbjct: 40 LNLQENSIQVIRTDTFKHLRHLEILQLSKNLVRKIEVGAFNGLPSLNTLELFDNRLTTVP 99
Query: 320 PSSIGNLSSLRALYLYNNGLCGFVPEEIRYLKSLSELEL---------CKNHLSGVIP-- 368
+ LS LR L+L NN + + SL L+L + G++
Sbjct: 100 TQAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLRRLDLGELKRLEYISEAAFEGLVNLR 159
Query: 369 ---------HSIGNLTGLLLLNMCE---NHLSGPIPKSFKNLTSVERVLLNQNNLSGKVY 416
I NLT L+ L E N L P SF+ LTS+ ++ L ++
Sbjct: 160 YLNLGMCNLKDIPNLTALVRLEELELSGNRLDLIRPGSFQGLTSLRKLWLMHAQVATIER 219
Query: 417 EAFGDHPNLTFLNLSQNNF 435
AF D +L LNLS NN
Sbjct: 220 NAFDDLKSLEELNLSHNNL 238
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 69/249 (27%), Positives = 101/249 (40%), Gaps = 29/249 (11%)
Query: 358 LCKNHLSGVIPHSIGNLTGLLLLNMCENHLSGPIPKSFKNLTSVERVLLNQNNLSGKVYE 417
+C +P SI LN+ EN + +FK+L +E + L++N +
Sbjct: 20 ICTRRELAEVPASIP--VNTRYLNLQENSIQVIRTDTFKHLRHLEILQLSKNLVRKIEVG 77
Query: 418 AFGDHPNLTFLNLSQNNFCGEISFNWRNFPKLGTFIVSVNNISGSIPP-EIGDSPKLQVL 476
AF P+L L L N + + KL + N I SIP P L+ L
Sbjct: 78 AFNGLPSLNTLELFDNRLTTVPTQAFEYLSKLRELWLRNNPIE-SIPSYAFNRVPSLRRL 136
Query: 477 DLSSNSIVGEIPVQLGKLFSLNKLILNLNQLSGGMPLELGSLTELQYLDLSANKLKSSIP 536
DL GE L +L L L+YL+L LK IP
Sbjct: 137 DL------GE-----------------LKRLEYISEAAFEGLVNLRYLNLGMCNLKD-IP 172
Query: 537 KSIGNLLRLRYLDLSNNQFGHKIPIELEKLIHLSELDLSYNFLGEEIPFQICNVKSLEKL 596
++ L+RL L+LS N+ P + L L +L L + + ++KSLE+L
Sbjct: 173 -NLTALVRLEELELSGNRLDLIRPGSFQGLTSLRKLWLMHAQVATIERNAFDDLKSLEEL 231
Query: 597 NLCHNNLLG 605
NL HNNL+
Sbjct: 232 NLSHNNLMS 240
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 66/259 (25%), Positives = 91/259 (35%), Gaps = 52/259 (20%)
Query: 114 QYLDLGSNQLSGVIPPEIGHLNQLRILYFDVNQLHGSIPPEIGQLSLINVLALCHNNLYG 173
+YL+L N + + HL L IL N + L +N L L N L
Sbjct: 38 RYLNLQENSIQVIRTDTFKHLRHLEILQLSKNLVRKIEVGAFNGLPSLNTLELFDNRLTT 97
Query: 174 SIPSSLGNLSNLANFYFNNNSLFDSIP-LVLGNLNSLSTMDLSQNQFXXXXXXXXXXXXX 232
+ LS L + NN + +SIP + SL +DL
Sbjct: 98 VPTQAFEYLSKLRELWLRNNPI-ESIPSYAFNRVPSLRRLDL------------------ 138
Query: 233 XXXXXXXXXXFSGSIPSIIGNLKSLLQLDLSENQLIGSIPLSFGNLSRLTLMSLFNNLLS 292
G LK L +SE G + L + NL L +
Sbjct: 139 -------------------GELKRLEY--ISEAAFEGLVNLRYLNLGMCNLKDI------ 171
Query: 293 GSLPPILGNLKSLSALGLHINQLSGVIPSSIGNLSSLRALYLYNNGLCGFVPEEIRYLKS 352
P L L L L L N+L + P S L+SLR L+L + + LKS
Sbjct: 172 ----PNLTALVRLEELELSGNRLDLIRPGSFQGLTSLRKLWLMHAQVATIERNAFDDLKS 227
Query: 353 LSELELCKNHLSGVIPHSI 371
L EL L N+L +PH +
Sbjct: 228 LEELNLSHNNLMS-LPHDL 245
>pdb|2O6Q|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors A29
Length = 270
Score = 46.6 bits (109), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 50/175 (28%), Positives = 71/175 (40%)
Query: 259 QLDLSENQLIGSIPLSFGNLSRLTLMSLFNNLLSGSLPPILGNLKSLSALGLHINQLSGV 318
+LDL N+L +F L++L L+ L +N L I LK+L L + N+L +
Sbjct: 41 KLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQAL 100
Query: 319 IPSSIGNLSSLRALYLYNNGLCGFVPEEIRYLKSLSELELCKNHLSGVIPHSIGNLTGLL 378
L +L L L N L P L L+ L L N L + LT L
Sbjct: 101 PIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLK 160
Query: 379 LLNMCENHLSGPIPKSFKNLTSVERVLLNQNNLSGKVYEAFGDHPNLTFLNLSQN 433
L + N L +F LT ++ + L+ N L AF L L L +N
Sbjct: 161 ELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQEN 215
Score = 46.6 bits (109), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 57/198 (28%), Positives = 84/198 (42%), Gaps = 37/198 (18%)
Query: 151 IPPEIGQLSLINVLALCHNNLYGSIPS-SLGNLSNLANFYFNNNSLFDSIPLVLGNLNSL 209
IP + +L L +N S+PS + L+ L Y N+N L + L +L
Sbjct: 35 IPADTKKLDL-------QSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNL 87
Query: 210 STMDLSQNQFXXXXXXXXXXXXXXXXXXXXXXXFSGSIP-SIIGNLKSLLQLDLSENQLI 268
T+ ++ N+ ++P + L +L +L L NQL
Sbjct: 88 ETLWVTDNKLQ-------------------------ALPIGVFDQLVNLAELRLDRNQLK 122
Query: 269 GSIPLSFGNLSRLTLMSLFNNLLSGSLPP-ILGNLKSLSALGLHINQLSGVIPSSIGNLS 327
P F +L++LT +SL N L SLP + L SL L L+ NQL V + L+
Sbjct: 123 SLPPRVFDSLTKLTYLSLGYNELQ-SLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLT 181
Query: 328 SLRALYLYNNGLCGFVPE 345
L+ L L NN L VPE
Sbjct: 182 ELKTLKLDNNQL-KRVPE 198
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 54/202 (26%), Positives = 79/202 (39%), Gaps = 28/202 (13%)
Query: 114 QYLDLGSNQLSGVIPPEIGHLNQLRILYFDVNQLHGSIPPEI-GQLSLINVLALCHNNLY 172
+ LDL SN+LS + L +LR+LY + N+L ++P I +L + L + N L
Sbjct: 40 KKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQ-TLPAGIFKELKNLETLWVTDNKLQ 98
Query: 173 GSIPSSLGNLSNLANFYFNNNSLFDSIPLVLGNLNSLSTMDLSQNQFXXXXXXXXXXXXX 232
L NLA + N L P V +L L+ + L N+
Sbjct: 99 ALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQ------------ 146
Query: 233 XXXXXXXXXXFSGSIPS-IIGNLKSLLQLDLSENQLIGSIPLSFGNLSRLTLMSLFNNLL 291
S+P + L SL +L L NQL +F L+ L + L NN L
Sbjct: 147 -------------SLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQL 193
Query: 292 SGSLPPILGNLKSLSALGLHIN 313
+L+ L L L N
Sbjct: 194 KRVPEGAFDSLEKLKMLQLQEN 215
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 57/203 (28%), Positives = 79/203 (38%), Gaps = 26/203 (12%)
Query: 354 SELELCKNHLSGVIPHSIGNLTGLLLLNMCENHLSGPIPKSFKNLTSVERVLLNQNNLSG 413
+L+L N LS + + LT L LL + +N L FK L ++E + + N L
Sbjct: 40 KKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQA 99
Query: 414 KVYEAFGDHPNLTFLNLSQNNFCGEISFNWRNFPKLGTFIVSVNNISGSIPPEIGDS-PK 472
F NL L L +N S+PP + DS K
Sbjct: 100 LPIGVFDQLVNLAELRLDRNQL-------------------------KSLPPRVFDSLTK 134
Query: 473 LQVLDLSSNSIVGEIPVQLGKLFSLNKLILNLNQLSGGMPLELGSLTELQYLDLSANKLK 532
L L L N + KL SL +L L NQL LTEL+ L L N+LK
Sbjct: 135 LTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLK 194
Query: 533 SSIPKSIGNLLRLRYLDLSNNQF 555
+ +L +L+ L L N +
Sbjct: 195 RVPEGAFDSLEKLKMLQLQENPW 217
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 44/128 (34%), Positives = 65/128 (50%), Gaps = 7/128 (5%)
Query: 473 LQVLDLSSNSIVGEIPVQL-GKLFSLNKLILNLNQLSGGMPLELGSLTELQYLDLSANKL 531
L+ L ++ N + +P+ + +L +L +L L+ NQL P SLT+L YL L N+L
Sbjct: 87 LETLWVTDNKLQA-LPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNEL 145
Query: 532 KSSIPKSI-GNLLRLRYLDLSNNQFGHKIPIELEKLIHLSELDLSYNFLGEEIPFQICNV 590
+ S+PK + L L+ L L NNQ +KL L L L N L + +P
Sbjct: 146 Q-SLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQL-KRVPEGA--F 201
Query: 591 KSLEKLNL 598
SLEKL +
Sbjct: 202 DSLEKLKM 209
Score = 34.3 bits (77), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 29/111 (26%), Positives = 43/111 (38%)
Query: 83 FSSFPHLVQLNLSFNIFFGIIPPQIGNLSKLQYLDLGSNQLSGVIPPEIGHLNQLRILYF 142
F +L +L L N + P +L+KL YL LG N+L + L L+ L
Sbjct: 105 FDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRL 164
Query: 143 DVNQLHGSIPPEIGQLSLINVLALCHNNLYGSIPSSLGNLSNLANFYFNNN 193
NQL +L+ + L L +N L + +L L N
Sbjct: 165 YNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQEN 215
Score = 31.2 bits (69), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 37/139 (26%), Positives = 52/139 (37%), Gaps = 2/139 (1%)
Query: 82 AFSSFPHLVQLNLSFNIFFGIIPPQIGNLSKLQYLDLGSNQLSGVIPPEIGHLNQLRILY 141
AF L L L+ N + L L+ L + N+L + L L L
Sbjct: 56 AFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELR 115
Query: 142 FDVNQLHGSIPPEI-GQLSLINVLALCHNNLYGSIPSSLGNLSNLANFYFNNNSLFDSIP 200
D NQL S+PP + L+ + L+L +N L L++L NN L
Sbjct: 116 LDRNQLK-SLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPE 174
Query: 201 LVLGNLNSLSTMDLSQNQF 219
L L T+ L NQ
Sbjct: 175 GAFDKLTELKTLKLDNNQL 193
Score = 28.9 bits (63), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 30/115 (26%), Positives = 50/115 (43%), Gaps = 5/115 (4%)
Query: 106 QIGNLSKLQYLDLGSNQLSGVIPPEIGHLNQLRILYFDVNQLHGSIPPEI-GQLSLINVL 164
Q+ NL++L+ L NQL + P L +L L N+L S+P + +L+ + L
Sbjct: 107 QLVNLAELR---LDRNQLKSLPPRVFDSLTKLTYLSLGYNELQ-SLPKGVFDKLTSLKEL 162
Query: 165 ALCHNNLYGSIPSSLGNLSNLANFYFNNNSLFDSIPLVLGNLNSLSTMDLSQNQF 219
L +N L + L+ L +NN L +L L + L +N +
Sbjct: 163 RLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPW 217
>pdb|3A79|B Chain B, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
Length = 562
Score = 46.6 bits (109), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 61/236 (25%), Positives = 97/236 (41%), Gaps = 40/236 (16%)
Query: 143 DVNQLHGSIPPEIGQLSLINVLALCHNNLYGSIPSSLGNLSNLANFYFNNNSL--FDSIP 200
D +H PP + +N N S+ L L N L F +
Sbjct: 340 DTPFIHMVCPPSPSSFTFLN---FTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVA 396
Query: 201 LVLGNLNSLSTMDLSQNQFXXXXXXXXXXXXXXXXXXXXXXXFSGSIPSIIGNLKSLLQL 260
L+ N++SL T+D+S N S + +S+L L
Sbjct: 397 LMTKNMSSLETLDVSLNSLN-----------------------SHAYDRTCAWAESILVL 433
Query: 261 DLSENQLIGSIPLSFGNLS-RLTLMSLFNNLLSGSLPPILGNLKSLSALGLHINQLSGVI 319
+LS N L GS+ F L ++ ++ L NN + S+P + +L++L L + NQL V
Sbjct: 434 NLSSNMLTGSV---FRCLPPKVKVLDLHNNRI-MSIPKDVTHLQALQELNVASNQLKSVP 489
Query: 320 PSSIGNLSSLRALYLYNNGLCGFVPEEIRYLKSLSELELCKNHLSGVIPHSIGNLT 375
L+SL+ ++L++N P IRYL E H SGV+ +S G++
Sbjct: 490 DGVFDRLTSLQYIWLHDNPWDCTCP-GIRYLS-----EWINKH-SGVVRNSAGSVA 538
Score = 36.6 bits (83), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 47/179 (26%), Positives = 80/179 (44%), Gaps = 22/179 (12%)
Query: 390 PIPKSFKNLTSVERVLLNQNNLSGKVYEAFGDHPNLTFLNLSQN---NFCGEISFNWRNF 446
P P SF L QN + V++ L L L +N NF +++ +N
Sbjct: 350 PSPSSFTFLN------FTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNF-FKVALMTKNM 402
Query: 447 PKLGTFIVSVNNI-SGSIPPEIGDSPKLQVLDLSSNSIVGEI----PVQLGKLFSLNKLI 501
L T VS+N++ S + + + VL+LSSN + G + P ++ L N I
Sbjct: 403 SSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLPPKVKVLDLHNNRI 462
Query: 502 LNLNQLSGGMPLELGSLTELQYLDLSANKLKSSIPKSIGNLLRLRYLDLSNNQFGHKIP 560
+++ P ++ L LQ L++++N+LKS L L+Y+ L +N + P
Sbjct: 463 MSI-------PKDVTHLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCP 514
Score = 32.3 bits (72), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 33/110 (30%), Positives = 51/110 (46%), Gaps = 27/110 (24%)
Query: 447 PKLGTFIVSVNNISGSIPPEIGDSPKLQVLDLSSNSIVGEIPVQLGKLFSLNKLILNLNQ 506
P+ +S N+IS P+I +L+VL LS N ++ SL+ + NQ
Sbjct: 52 PRTKALSLSQNSISELRMPDISFLSELRVLRLSHN-----------RIRSLDFHVFLFNQ 100
Query: 507 LSGGMPLELGSLTELQYLDLSANKLKSSIPKSIGNLLRLRYLDLSNNQFG 556
+L+YLD+S N+L++ S + LR+LDLS N F
Sbjct: 101 -------------DLEYLDVSHNRLQN---ISCCPMASLRHLDLSFNDFD 134
Score = 30.0 bits (66), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 42/157 (26%), Positives = 65/157 (41%), Gaps = 14/157 (8%)
Query: 260 LDLSENQLIGSIPLSFGNLSRLTLMSLFNNLLSGSLPPIL--GNLKSLSALGLHINQL-S 316
L+ ++N S+ L RL + L N L L N+ SL L + +N L S
Sbjct: 358 LNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNS 417
Query: 317 GVIPSSIGNLSSLRALYLYNNGLCGFV----PEEIRYLKSLSELELCKNHLSGVIPHSIG 372
+ S+ L L +N L G V P +++ L +L N + IP +
Sbjct: 418 HAYDRTCAWAESILVLNLSSNMLTGSVFRCLPPKVKVL------DLHNNRIMS-IPKDVT 470
Query: 373 NLTGLLLLNMCENHLSGPIPKSFKNLTSVERVLLNQN 409
+L L LN+ N L F LTS++ + L+ N
Sbjct: 471 HLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDN 507
Score = 29.6 bits (65), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 35/123 (28%), Positives = 55/123 (44%), Gaps = 20/123 (16%)
Query: 103 IPPQIGNLSKLQYLDLGSNQLSGVIPPEIGHLNQLRILYFDVNQLHGSIPPEIGQLSLIN 162
+PP+ LS L N +S + P+I L++LR+L H I + L N
Sbjct: 50 LPPRTKALS------LSQNSISELRMPDISFLSELRVLRLS----HNRIRSLDFHVFLFN 99
Query: 163 ----VLALCHNNLYGSIPSSLGNLSNLANFYFNNNSLFDSIPLV--LGNLNSLSTMDLSQ 216
L + HN L + +L +L + FN+ FD +P+ GNL L+ + LS
Sbjct: 100 QDLEYLDVSHNRLQNISCCPMASLRHL-DLSFND---FDVLPVCKEFGNLTKLTFLGLSA 155
Query: 217 NQF 219
+F
Sbjct: 156 AKF 158
Score = 29.6 bits (65), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 35/117 (29%), Positives = 49/117 (41%), Gaps = 14/117 (11%)
Query: 109 NLSKLQYLDLGSNQL-SGVIPPEIGHLNQLRILYFDVNQLHGSI----PPEIGQLSLINV 163
N+S L+ LD+ N L S + +L N L GS+ PP++ L L
Sbjct: 401 NMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLPPKVKVLDL--- 457
Query: 164 LALCHNNLYGSIPSSLGNLSNLANFYFNNNSLFDSIPL-VLGNLNSLSTMDLSQNQF 219
HNN SIP + +L L +N L S+P V L SL + L N +
Sbjct: 458 ----HNNRIMSIPKDVTHLQALQELNVASNQL-KSVPDGVFDRLTSLQYIWLHDNPW 509
Score = 28.9 bits (63), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 41/161 (25%), Positives = 66/161 (40%), Gaps = 19/161 (11%)
Query: 291 LSGSLPPILGNLKSLSALGLHI-------NQLSGVIPSSIGNLSSL--------RALYLY 335
+S PI+G+ + AL L + N+L ++ S NL+ + +AL L
Sbjct: 1 MSQDRKPIVGSFHFVCALALIVGSMTPFSNELESMVDYSNRNLTHVPKDLPPRTKALSLS 60
Query: 336 NNGLCGFVPEEIRYLKSLSELELCKNHLSGVIPHSIGNLTGLLLLNMCENHLSGPIPKSF 395
N + +I +L L L L N + + H L L++ N L S
Sbjct: 61 QNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQN---ISC 117
Query: 396 KNLTSVERVLLNQNNLSG-KVYEAFGDHPNLTFLNLSQNNF 435
+ S+ + L+ N+ V + FG+ LTFL LS F
Sbjct: 118 CPMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKF 158
>pdb|3E6J|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor (Vlr)
Rbc36 In Complex With H-Trisaccharide
Length = 229
Score = 46.2 bits (108), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 45/137 (32%), Positives = 70/137 (51%), Gaps = 8/137 (5%)
Query: 450 GTFIVSVNNISGSIPPEIGDSPKLQVLDLSSNSIVGEIPVQLGKLFSLNKLILNLNQLSG 509
GT + + S+P G Q+L L N I P L +L +L L NQL G
Sbjct: 21 GTTVDCRSKRHASVP--AGIPTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQL-G 77
Query: 510 GMPLEL-GSLTELQYLDLSANKLKSSIPKSI-GNLLRLRYLDLSNNQFGHKIPIELEKLI 567
+P+ + SLT+L LDL N+L + +P ++ L+ L+ L + N+ ++P +E+L
Sbjct: 78 ALPVGVFDSLTQLTVLDLGTNQL-TVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLT 135
Query: 568 HLSELDLSYNFLGEEIP 584
HL+ L L N L + IP
Sbjct: 136 HLTHLALDQNQL-KSIP 151
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 47/143 (32%), Positives = 74/143 (51%), Gaps = 10/143 (6%)
Query: 308 LGLHINQLSGVIPSSIGNLSSLRALYLYNNGLCGFVPEEI-RYLKSLSELELCKNHLSGV 366
L LH NQ++ + P +L +L+ LYL +N L G +P + L L+ L+L N L+ V
Sbjct: 45 LYLHDNQITKLEPGVFDSLINLKELYLGSNQL-GALPVGVFDSLTQLTVLDLGTNQLT-V 102
Query: 367 IPHSI-GNLTGLLLLNMCENHLSGPIPKSFKNLTSVERVLLNQNNLSGKVYEAFGDHPNL 425
+P ++ L L L MC N L+ +P+ + LT + + L+QN L + AF +L
Sbjct: 103 LPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSL 161
Query: 426 TFLNLSQNNF---CGEISF--NW 443
T L N + C +I + NW
Sbjct: 162 THAYLFGNPWDCECRDIMYLRNW 184
Score = 38.9 bits (89), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 47/182 (25%), Positives = 70/182 (38%), Gaps = 29/182 (15%)
Query: 157 QLSLINVLALCHNNLYGSIPSSLGNLSNLANFYFNNNSLFDSIPLVLGNLNSLSTMDLSQ 216
Q S C + + S+P+ G +N Y ++N + P V +L +L + L
Sbjct: 16 QCSCSGTTVDCRSKRHASVPA--GIPTNAQILYLHDNQITKLEPGVFDSLINLKELYLGS 73
Query: 217 NQFXXXXXXXXXXXXXXXXXXXXXXXFSGSIP-SIIGNLKSLLQLDLSENQLIGSIPLSF 275
NQ G++P + +L L LDL NQL F
Sbjct: 74 NQL-------------------------GALPVGVFDSLTQLTVLDLGTNQLTVLPSAVF 108
Query: 276 GNLSRLTLMSLFNNLLSGSLPPILGNLKSLSALGLHINQLSGVIPSSIGNLSSLRALYLY 335
L L + + N L+ LP + L L+ L L NQL + + LSSL YL+
Sbjct: 109 DRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLF 167
Query: 336 NN 337
N
Sbjct: 168 GN 169
Score = 36.2 bits (82), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 41/119 (34%), Positives = 63/119 (52%), Gaps = 7/119 (5%)
Query: 78 LQEFAFSSFPHLVQLNLSFNIFFGIIPPQI-GNLSKLQYLDLGSNQLSGVIPPEI-GHLN 135
L+ F S +L +L L N G +P + +L++L LDLG+NQL+ V+P + L
Sbjct: 55 LEPGVFDSLINLKELYLGSNQL-GALPVGVFDSLTQLTVLDLGTNQLT-VLPSAVFDRLV 112
Query: 136 QLRILYFDVNQLHGSIPPEIGQLSLINVLALCHNNLYGSIP-SSLGNLSNLANFYFNNN 193
L+ L+ N+L +P I +L+ + LAL N L SIP + LS+L + Y N
Sbjct: 113 HLKELFMCCNKL-TELPRGIERLTHLTHLALDQNQL-KSIPHGAFDRLSSLTHAYLFGN 169
Score = 30.0 bits (66), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 34/108 (31%), Positives = 53/108 (49%), Gaps = 5/108 (4%)
Query: 114 QYLDLGSNQLSGVIPPEIGHLNQLRILYFDVNQLHGSIPPEI-GQLSLINVLALCHNNLY 172
Q L L NQ++ + P L L+ LY NQL G++P + L+ + VL L N L
Sbjct: 43 QILYLHDNQITKLEPGVFDSLINLKELYLGSNQL-GALPVGVFDSLTQLTVLDLGTNQLT 101
Query: 173 GSIPSSL-GNLSNLANFYFNNNSLFDSIPLVLGNLNSLSTMDLSQNQF 219
+PS++ L +L + N L + +P + L L+ + L QNQ
Sbjct: 102 -VLPSAVFDRLVHLKELFMCCNKLTE-LPRGIERLTHLTHLALDQNQL 147
>pdb|3ZYO|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
And Immunoglobulin Domain Of Netrin-G Ligand-3
Length = 411
Score = 45.8 bits (107), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 57/199 (28%), Positives = 83/199 (41%), Gaps = 23/199 (11%)
Query: 260 LDLSENQLIGSIPLSFGNLSRLTLMSLFNNLLSGSLPPILGNLKSLSALGLHINQLSGVI 319
L+L EN + +F +L L ++ L NL+ L SL+ L L N+L+ V
Sbjct: 40 LNLQENSIQVIRTDTFKHLRHLEILQLSKNLVRKIEVGAFNGLPSLNTLELFDNRLTTVP 99
Query: 320 PSSIGNLSSLRALYLYNNGLCGFVPEEIRYLKSLSELEL---------CKNHLSGVIP-- 368
+ LS LR L+L NN + + SL L+L + G++
Sbjct: 100 TQAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLRRLDLGELKRLEYISEAAFEGLVNLR 159
Query: 369 ---------HSIGNLTGLLLLNMCE---NHLSGPIPKSFKNLTSVERVLLNQNNLSGKVY 416
I NLT L+ L E N L P SF+ LTS+ ++ L ++
Sbjct: 160 YLNLGMCNLKDIPNLTALVRLEELELSGNRLDLIRPGSFQGLTSLRKLWLMHAQVATIER 219
Query: 417 EAFGDHPNLTFLNLSQNNF 435
AF D +L LNLS NN
Sbjct: 220 NAFDDLKSLEELNLSHNNL 238
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 69/248 (27%), Positives = 101/248 (40%), Gaps = 29/248 (11%)
Query: 358 LCKNHLSGVIPHSIGNLTGLLLLNMCENHLSGPIPKSFKNLTSVERVLLNQNNLSGKVYE 417
+C +P SI LN+ EN + +FK+L +E + L++N +
Sbjct: 20 ICTRRELAEVPASIP--VNTRYLNLQENSIQVIRTDTFKHLRHLEILQLSKNLVRKIEVG 77
Query: 418 AFGDHPNLTFLNLSQNNFCGEISFNWRNFPKLGTFIVSVNNISGSIPP-EIGDSPKLQVL 476
AF P+L L L N + + KL + N I SIP P L+ L
Sbjct: 78 AFNGLPSLNTLELFDNRLTTVPTQAFEYLSKLRELWLRNNPIE-SIPSYAFNRVPSLRRL 136
Query: 477 DLSSNSIVGEIPVQLGKLFSLNKLILNLNQLSGGMPLELGSLTELQYLDLSANKLKSSIP 536
DL GE L +L L L+YL+L LK IP
Sbjct: 137 DL------GE-----------------LKRLEYISEAAFEGLVNLRYLNLGMCNLKD-IP 172
Query: 537 KSIGNLLRLRYLDLSNNQFGHKIPIELEKLIHLSELDLSYNFLGEEIPFQICNVKSLEKL 596
++ L+RL L+LS N+ P + L L +L L + + ++KSLE+L
Sbjct: 173 -NLTALVRLEELELSGNRLDLIRPGSFQGLTSLRKLWLMHAQVATIERNAFDDLKSLEEL 231
Query: 597 NLCHNNLL 604
NL HNNL+
Sbjct: 232 NLSHNNLM 239
Score = 38.9 bits (89), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 66/259 (25%), Positives = 91/259 (35%), Gaps = 52/259 (20%)
Query: 114 QYLDLGSNQLSGVIPPEIGHLNQLRILYFDVNQLHGSIPPEIGQLSLINVLALCHNNLYG 173
+YL+L N + + HL L IL N + L +N L L N L
Sbjct: 38 RYLNLQENSIQVIRTDTFKHLRHLEILQLSKNLVRKIEVGAFNGLPSLNTLELFDNRLTT 97
Query: 174 SIPSSLGNLSNLANFYFNNNSLFDSIP-LVLGNLNSLSTMDLSQNQFXXXXXXXXXXXXX 232
+ LS L + NN + +SIP + SL +DL
Sbjct: 98 VPTQAFEYLSKLRELWLRNNPI-ESIPSYAFNRVPSLRRLDL------------------ 138
Query: 233 XXXXXXXXXXFSGSIPSIIGNLKSLLQLDLSENQLIGSIPLSFGNLSRLTLMSLFNNLLS 292
G LK L +SE G + L + NL L +
Sbjct: 139 -------------------GELKRLEY--ISEAAFEGLVNLRYLNLGMCNLKDI------ 171
Query: 293 GSLPPILGNLKSLSALGLHINQLSGVIPSSIGNLSSLRALYLYNNGLCGFVPEEIRYLKS 352
P L L L L L N+L + P S L+SLR L+L + + LKS
Sbjct: 172 ----PNLTALVRLEELELSGNRLDLIRPGSFQGLTSLRKLWLMHAQVATIERNAFDDLKS 227
Query: 353 LSELELCKNHLSGVIPHSI 371
L EL L N+L +PH +
Sbjct: 228 LEELNLSHNNLMS-LPHDL 245
>pdb|3TWI|D Chain D, Variable Lymphocyte Receptor Recognition Of The
Immunodominant Glycoprotein Of Bacillus Anthracis Spores
pdb|3TWI|E Chain E, Variable Lymphocyte Receptor Recognition Of The
Immunodominant Glycoprotein Of Bacillus Anthracis Spores
pdb|3TWI|F Chain F, Variable Lymphocyte Receptor Recognition Of The
Immunodominant Glycoprotein Of Bacillus Anthracis Spores
Length = 179
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 32/93 (34%), Positives = 48/93 (51%), Gaps = 2/93 (2%)
Query: 245 GSIPSIIGNLKSLLQLDLSENQLIGSIPLSFGNLSRLTLMSLFNNLLSGSLPPILGNLKS 304
S+P+ I +L L + NQ+ P F +L++LT ++L N L+ + L
Sbjct: 32 ASVPAGIPTTTQVLHLYI--NQITKLEPGVFDSLTQLTYLNLAVNQLTALPVGVFDKLTK 89
Query: 305 LSALGLHINQLSGVIPSSIGNLSSLRALYLYNN 337
L+ L LHINQL + NL SL +YL+NN
Sbjct: 90 LTHLALHINQLKSIPMGVFDNLKSLTHIYLFNN 122
Score = 31.2 bits (69), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 35/97 (36%), Positives = 49/97 (50%), Gaps = 6/97 (6%)
Query: 461 GSIPPEIGDSPKLQVLDLSSNSIVGEIPVQLGKLFSLNKLILNLNQLSGGMPLEL-GSLT 519
S+P I + QVL L N I P L L L L +NQL+ +P+ + LT
Sbjct: 32 ASVPAGIPTT--TQVLHLYINQITKLEPGVFDSLTQLTYLNLAVNQLTA-LPVGVFDKLT 88
Query: 520 ELQYLDLSANKLKSSIPKSI-GNLLRLRYLDLSNNQF 555
+L +L L N+LK SIP + NL L ++ L NN +
Sbjct: 89 KLTHLALHINQLK-SIPMGVFDNLKSLTHIYLFNNPW 124
Score = 30.8 bits (68), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 38/74 (51%), Gaps = 5/74 (6%)
Query: 500 LILNLNQLSGGMPLELGSLTELQYLDLSANKLKSSIPKSIGNLLRLRYLDLSNNQFGHKI 559
L L +NQ++ P SLT+L YL+L+ N+L + L +L +L L NQ I
Sbjct: 45 LHLYINQITKLEPGVFDSLTQLTYLNLAVNQLTALPVGVFDKLTKLTHLALHINQL-KSI 103
Query: 560 PI----ELEKLIHL 569
P+ L+ L H+
Sbjct: 104 PMGVFDNLKSLTHI 117
Score = 29.6 bits (65), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 32/101 (31%), Positives = 51/101 (50%), Gaps = 10/101 (9%)
Query: 503 NLNQLSGGMPLELGSLTELQYLDLSANKLKSSIPKSIGNLLRLRYLDLSNNQFGHKIPIE 562
+L + G+P T Q L L N++ P +L +L YL+L+ NQ +P+
Sbjct: 30 SLASVPAGIP------TTTQVLHLYINQITKLEPGVFDSLTQLTYLNLAVNQLT-ALPVG 82
Query: 563 L-EKLIHLSELDLSYNFLGEEIPFQIC-NVKSLEKLNLCHN 601
+ +KL L+ L L N L + IP + N+KSL + L +N
Sbjct: 83 VFDKLTKLTHLALHINQL-KSIPMGVFDNLKSLTHIYLFNN 122
Score = 29.3 bits (64), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 39/84 (46%), Gaps = 2/84 (2%)
Query: 111 SKLQYLDLGSNQLSGVIPPEIGHLNQLRILYFDVNQLHGSIPPEIGQLSLINVLALCHNN 170
+ Q L L NQ++ + P L QL L VNQL +L+ + LAL H N
Sbjct: 40 TTTQVLHLYINQITKLEPGVFDSLTQLTYLNLAVNQLTALPVGVFDKLTKLTHLAL-HIN 98
Query: 171 LYGSIPSSL-GNLSNLANFYFNNN 193
SIP + NL +L + Y NN
Sbjct: 99 QLKSIPMGVFDNLKSLTHIYLFNN 122
Score = 28.9 bits (63), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 43/91 (47%), Gaps = 9/91 (9%)
Query: 70 SSMALNGT---LQEFAFSSFPHLVQ-----LNLSFNIFFGIIPPQIGNLSKLQYLDLGSN 121
S + +GT QE + +S P + L+L N + P +L++L YL+L N
Sbjct: 15 SQCSCSGTTVNCQERSLASVPAGIPTTTQVLHLYINQITKLEPGVFDSLTQLTYLNLAVN 74
Query: 122 QLSGVIPPEIGHLNQLRILYFDVNQLHGSIP 152
QL+ + L +L L +NQL SIP
Sbjct: 75 QLTALPVGVFDKLTKLTHLALHINQLK-SIP 104
>pdb|2ID5|A Chain A, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|B Chain B, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|C Chain C, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|D Chain D, Crystal Structure Of The Lingo-1 Ectodomain
Length = 477
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 84/340 (24%), Positives = 136/340 (40%), Gaps = 56/340 (16%)
Query: 77 TLQEFAFSSFPHLVQLNLSFNIFFGIIPPQIGNLSKLQYLDLGSNQLSGVIPPEIGHLNQ 136
TL + F+SFPHL +L L+ NI + P NL L+ L L SN+L +IP +
Sbjct: 46 TLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLK-LIPLGV----- 99
Query: 137 LRILYFDVNQLHGSIPPEIGQLSLINVLALCHNNLYGSIPSSLGNLSNLANFYFNNNSLF 196
LS + L + N + + +L NL + +N L
Sbjct: 100 ------------------FTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLV 141
Query: 197 DSIPLVLGNLNSLSTMDLSQNQFXXXXXXXXXXXXXXXXXXXXXXXFSGSIPS-IIGNLK 255
LNSL + L + SIP+ + +L
Sbjct: 142 YISHRAFSGLNSLEQLTLEKCNLT-------------------------SIPTEALSHLH 176
Query: 256 SLLQLDLSENQLIGSIPLSFGNLSRLTLMSLFNNLLSGSLPP--ILG-NLKSLSALGLHI 312
L+ L L + SF L RL ++ + + ++ P + G NL SLS H
Sbjct: 177 GLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSI--THC 234
Query: 313 NQLSGVIPSSIGNLSSLRALYLYNNGLCGFVPEEIRYLKSLSELELCKNHLSGVIPHSIG 372
N L+ V ++ +L LR L L N + + L L E++L L+ V P++
Sbjct: 235 N-LTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFR 293
Query: 373 NLTGLLLLNMCENHLSGPIPKSFKNLTSVERVLLNQNNLS 412
L L +LN+ N L+ F ++ ++E ++L+ N L+
Sbjct: 294 GLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLA 333
Score = 42.7 bits (99), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 85/359 (23%), Positives = 145/359 (40%), Gaps = 58/359 (16%)
Query: 260 LDLSENQLIGSIPLSFGNLSRLTLMSLFNNLLSGSLPPILGNLKSLSALGLHINQLSGVI 319
LDL +N++ F + L + L N++S P NL +L LGL N+L +I
Sbjct: 37 LDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLK-LI 95
Query: 320 PSSIGNLSSLRALYLYNNGLCGFVPEEIRYLKSLSELELCKNHLSGVIPHSIGNLTGLLL 379
P +G + L +L++L++ +N + ++ + +L L
Sbjct: 96 P--LGVFTG---------------------LSNLTKLDISENKIVILLDYMFQDLYNLKS 132
Query: 380 LNMCENHLSGPIPKSFKNLTSVERVLLNQNNLSGKVYEAFGDHPNLTFLNLSQNNFCGEI 439
L + +N L ++F L S+E++ L + NL+ EA L L L N
Sbjct: 133 LEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIR 192
Query: 440 SFNWRNFPKLGTFIVSVNNISGSIPPEIGDSPKLQVLDLSSNSIVGEIPVQLGKLFSLNK 499
++++ +L EI P L ++ N + G +L
Sbjct: 193 DYSFKRLYRLKVL-------------EISHWPYLDT--MTPNCLYG---------LNLTS 228
Query: 500 LILNLNQLSGGMPLELGSLTELQYLDLSANKLKSSIPKSIGNLLRLRYLDLSNNQFGHKI 559
L + L+ L + L L++L+LS N + + + LLRL+ + L Q
Sbjct: 229 LSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVE 288
Query: 560 PIELEKLIHLSELDLSYNFLG--EEIPFQICNVKSLEKLNL------CHNNLLGSFQQK 610
P L +L L++S N L EE F +V +LE L L C LL F+++
Sbjct: 289 PYAFRGLNYLRVLNVSGNQLTTLEESVFH--SVGNLETLILDSNPLACDCRLLWVFRRR 345
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 67/289 (23%), Positives = 124/289 (42%), Gaps = 27/289 (9%)
Query: 257 LLQLDLSENQLIGSIPLSFGNLSRLTLMSLFNNLLSGSLPPILGNLKSLSALGLHINQLS 316
L +L+L+EN + P +F NL L + L +N L + L +L+ L + N++
Sbjct: 58 LEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIV 117
Query: 317 GVIPSSIGNLSSLRALYLYNNGLCGFVPEEIRYLKSLSELELCKNHLSGVIPHSIGNLTG 376
++ +L +L++L + +N L L SL +L L K +L+ + ++ +L G
Sbjct: 118 ILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHG 177
Query: 377 LLLLNMCENHLSGPIPKSFKNLTSVERVLLNQNNLSGKVYEAFGDHPNLTFLNLSQNNFC 436
L++L + +++ SFK L L L +S +
Sbjct: 178 LIVLRLRHLNINAIRDYSFKRLY------------------------RLKVLEISHWPYL 213
Query: 437 GEISFNWRNFPKLGTFIVSVNNISGSIPPEIGDSPKLQVLDLSSNSIVGEIPVQLGKLFS 496
++ N L + ++ N++ + L+ L+LS N I L +L
Sbjct: 214 DTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLR 273
Query: 497 LNKLILNLNQLSGGMPLELGSLTELQYLDLSANK---LKSSIPKSIGNL 542
L ++ L QL+ P L L+ L++S N+ L+ S+ S+GNL
Sbjct: 274 LQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNL 322
Score = 32.0 bits (71), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 42/85 (49%), Gaps = 4/85 (4%)
Query: 67 INLSSMALNGT-LQEFAFSSFPHLVQL---NLSFNIFFGIIPPQIGNLSKLQYLDLGSNQ 122
+NL+S+++ L + + HLV L NLS+N I + L +LQ + L Q
Sbjct: 224 LNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQ 283
Query: 123 LSGVIPPEIGHLNQLRILYFDVNQL 147
L+ V P LN LR+L NQL
Sbjct: 284 LAVVEPYAFRGLNYLRVLNVSGNQL 308
>pdb|3CIG|A Chain A, Crystal Structure Of Mouse Tlr3 Ectodomain
pdb|3CIY|A Chain A, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
pdb|3CIY|B Chain B, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
Length = 697
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 127/497 (25%), Positives = 190/497 (38%), Gaps = 29/497 (5%)
Query: 111 SKLQYLDLGSNQLSGVIPPEIGHLNQLRILYFDVNQLHGSIPPEIGQ-LSLINVLALCHN 169
S + L+L NQL + P +QL IL N + + PE+ Q L L+ VL L HN
Sbjct: 25 SNITVLNLTHNQLRRLPPTNFTRYSQLAILDAGFNSI-SKLEPELCQILPLLKVLNLQHN 83
Query: 170 NLYGSIPSSLGNLSNLANFYFNNNSLFDSIPLVLGNLNSLSTMDLSQNQFXXXXX---XX 226
L + +NL +NS+ N +L +DLS N
Sbjct: 84 ELSQISDQTFVFCTNLTELDLMSNSIHKIKSNPFKNQKNLIKLDLSHNGLSSTKLGTGVQ 143
Query: 227 XXXXXXXXXXXXXXXXFSGSIPSIIGNLKSLLQLDLSENQLIGSIPLSFGNLSRLTLMSL 286
+GN SL +LDLS N L P F + +L + L
Sbjct: 144 LENLQELLLAKNKILALRSEELEFLGN-SSLRKLDLSSNPLKEFSPGCFQTIGKLFALLL 202
Query: 287 FNNLLSGSLPPILG---NLKSLSALGLHINQLSGVIPSSIGNL--SSLRALYLYNNGLCG 341
N L+ L L + S+ L L NQL S+ L ++L L L N L
Sbjct: 203 NNAQLNPHLTEKLCWELSNTSIQNLSLANNQLLATSESTFSGLKWTNLTQLDLSYNNLHD 262
Query: 342 FVPEEIRYLKSLSELELCKNHLSGVIPHSIGNLTGLLLLNMCENHLSGPI---------P 392
YL SL L L N++ + P S L+ L L++ +
Sbjct: 263 VGNGSFSYLPSLRYLSLEYNNIQRLSPRSFYGLSNLRYLSLKRAFTKQSVSLASHPNIDD 322
Query: 393 KSFKNLTSVERVLLNQNNLSGKVYEAFGDHPNLTFLNLSQNNFCGEISFNWRNFPKLG-- 450
SF+ L +E + ++ NN+ F +L +L+LS+ F + F L
Sbjct: 323 FSFQWLKYLEYLNMDDNNIPSTKSNTFTGLVSLKYLSLSKT-FTSLQTLTNETFVSLAHS 381
Query: 451 ---TFIVSVNNISGSIPPEIGDSPKLQVLDLSSNSIVGEIPVQLGK-LFSLNKLILNLNQ 506
T ++ N+IS +L++LDL N I ++ Q + L ++ ++ L+ N+
Sbjct: 382 PLLTLNLTKNHISKIANGTFSWLGQLRILDLGLNEIEQKLSGQEWRGLRNIFEIYLSYNK 441
Query: 507 LSGGMPLELGSLTELQYLDLSANKLKSSI--PKSIGNLLRLRYLDLSNNQFGHKIPIELE 564
+ LQ L L LK+ P L L LDLSNN + LE
Sbjct: 442 YLQLSTSSFALVPSLQRLMLRRVALKNVDISPSPFRPLRNLTILDLSNNNIANINEDLLE 501
Query: 565 KLIHLSELDLSYNFLGE 581
L +L LD +N L
Sbjct: 502 GLENLEILDFQHNNLAR 518
Score = 35.8 bits (81), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 89/327 (27%), Positives = 121/327 (37%), Gaps = 60/327 (18%)
Query: 327 SSLRALYLYNNGLCGFVPEEIRYLKSLSELELCKNHLSGVIPHSIGNLTGLLLLNMCENH 386
S++ L L +N L P L+ L+ N +S + P L L +LN+ N
Sbjct: 25 SNITVLNLTHNQLRRLPPTNFTRYSQLAILDAGFNSISKLEPELCQILPLLKVLNLQHNE 84
Query: 387 LSGPIPKSFKNLTSVERVLLNQNNLSGKVYEAFGDHPNLTFLNLSQNNFCGEISFNWRNF 446
LS ++F T++ + L N++ F + NL L+LS N
Sbjct: 85 LSQISDQTFVFCTNLTELDLMSNSIHKIKSNPFKNQKNLIKLDLSHNGLSST-------- 136
Query: 447 PKLGTFIV---------SVNNISGSIPPEI---GDSPKLQVLDLSSNSIVGEIP---VQL 491
KLGT + + N I E+ G+S L+ LDLSSN + P +
Sbjct: 137 -KLGTGVQLENLQELLLAKNKILALRSEELEFLGNS-SLRKLDLSSNPLKEFSPGCFQTI 194
Query: 492 GKLFSL--------------------NKLILNL----NQLSGGMPLELGSL--TELQYLD 525
GKLF+L N I NL NQL L T L LD
Sbjct: 195 GKLFALLLNNAQLNPHLTEKLCWELSNTSIQNLSLANNQLLATSESTFSGLKWTNLTQLD 254
Query: 526 LSANKLKSSIPKSIGNLLRLRYLDLSNNQFGHKIPIELEKLIHLSELDLSYNFLGEEI-- 583
LS N L S L LRYL L N P L +L L L F + +
Sbjct: 255 LSYNNLHDVGNGSFSYLPSLRYLSLEYNNIQRLSPRSFYGLSNLRYLSLKRAFTKQSVSL 314
Query: 584 -------PFQICNVKSLEKLNLCHNNL 603
F +K LE LN+ NN+
Sbjct: 315 ASHPNIDDFSFQWLKYLEYLNMDDNNI 341
Score = 35.0 bits (79), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 123/504 (24%), Positives = 194/504 (38%), Gaps = 75/504 (14%)
Query: 161 INVLALCHNNLYGSIPSSLGNLSNLANFYFNNNSLFDSIPLVLGNLNSLSTMDLSQNQFX 220
I VL L HN L P++ S LA NS+ P + L L ++L N+
Sbjct: 27 ITVLNLTHNQLRRLPPTNFTRYSQLAILDAGFNSISKLEPELCQILPLLKVLNLQHNELS 86
Query: 221 XXXXXXXXXXXXXXXXXXXXXXFSGSIPSIIGNLKSLLQLDLSENQL------------- 267
+ N K+L++LDLS N L
Sbjct: 87 QISDQTFVFCTNLTELDLMSNSIHKIKSNPFKNQKNLIKLDLSHNGLSSTKLGTGVQLEN 146
Query: 268 -------------IGSIPLSFGNLSRLTLMSLFNNLLSGSLPPILGNLKSLSALGLHINQ 314
+ S L F S L + L +N L P + L AL L+ Q
Sbjct: 147 LQELLLAKNKILALRSEELEFLGNSSLRKLDLSSNPLKEFSPGCFQTIGKLFALLLNNAQ 206
Query: 315 LSGVIPSSIG---NLSSLRALYLYNNGLCGFVPEEIRYLK--SLSELELCKNHLSGVIPH 369
L+ + + + +S++ L L NN L LK +L++L+L N+L V
Sbjct: 207 LNPHLTEKLCWELSNTSIQNLSLANNQLLATSESTFSGLKWTNLTQLDLSYNNLHDVGNG 266
Query: 370 SIGNLTGLLLLNMCENHLSGPIPKSFKNLTSVERVLLNQNNLSGKVYEAFGDHPN----- 424
S L L L++ N++ P+SF L+++ + L + V + HPN
Sbjct: 267 SFSYLPSLRYLSLEYNNIQRLSPRSFYGLSNLRYLSLKRAFTKQSV--SLASHPNIDDFS 324
Query: 425 ------LTFLNLSQNN--------FCGEISFNWRNFPKLGTFIVSVNNISGSIPPEIGDS 470
L +LN+ NN F G +S + + K T S+ ++ + S
Sbjct: 325 FQWLKYLEYLNMDDNNIPSTKSNTFTGLVSLKYLSLSKTFT---SLQTLTNETFVSLAHS 381
Query: 471 PKLQVLDLSSNSIVGEIPVQLGKLFSLNKLILNLNQ----LSGGMPLELGSLTEL----- 521
P L L+L+ N I L L L L LN+ LSG L ++ E+
Sbjct: 382 P-LLTLNLTKNHISKIANGTFSWLGQLRILDLGLNEIEQKLSGQEWRGLRNIFEIYLSYN 440
Query: 522 QYLDLSAN--KLKSSIPKSIGNLLRLRYLDLSNNQFGHKIPIELEKLIHLSELDLSYNFL 579
+YL LS + L S+ + + + L+ +D+S P L +L+ LDLS N +
Sbjct: 441 KYLQLSTSSFALVPSLQRLMLRRVALKNVDIS--------PSPFRPLRNLTILDLSNNNI 492
Query: 580 GEEIPFQICNVKSLEKLNLCHNNL 603
+ +++LE L+ HNNL
Sbjct: 493 ANINEDLLEGLENLEILDFQHNNL 516
>pdb|1XCD|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 1
pdb|1XEC|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
pdb|1XEC|B Chain B, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
Length = 329
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 58/230 (25%), Positives = 107/230 (46%), Gaps = 9/230 (3%)
Query: 282 TLMSLFNNLLSGSLPPILGNLKSLSALGLHINQLSGVIPSSIGNLSSLRALYLYNNGLCG 341
L+ L NN ++ NLK+L L L N++S + P + L L LYL N L
Sbjct: 55 ALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQL-K 113
Query: 342 FVPEEIRYLKSLSELELCKNHLSGVIPHSIGNLTGLLLLNMCENHL--SGPIPKSFKNLT 399
+PE++ K+L EL + +N ++ V L ++++ + N L SG +F+ +
Sbjct: 114 ELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMK 171
Query: 400 SVERVLLNQNNLSGKVYEAFGDHPNLTFLNLSQNNFCGEISFNWRNFPKLGTFIVSVNNI 459
+ + + N++ G P+LT L+L N + + + L +S N+I
Sbjct: 172 KLSYIRIADTNITTI---PQGLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSI 228
Query: 460 SGSIPPEIGDSPKLQVLDLSSNSIVGEIPVQLGKLFSLNKLILNLNQLSG 509
S + ++P L+ L L++N +V ++P L + + L+ N +S
Sbjct: 229 SAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISA 277
Score = 32.3 bits (72), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 63/283 (22%), Positives = 109/283 (38%), Gaps = 39/283 (13%)
Query: 133 HLNQLRILYFDVNQLHGSIPPEIGQLSLINVLALCHNNLYGSIPSSLGNLSNLANFYFNN 192
HL ++ + ++ +PP+ L L N N + NL NL N
Sbjct: 32 HLRVVQCSDLGLEKVPKDLPPDTALLDLQN------NKITEIKDGDFKNLKNLHTLILIN 85
Query: 193 NSLFDSIPLVLGNLNSLSTMDLSQNQFXXXXXXXXXXXXXXXXXXXXXXXFSGSIPSIIG 252
N + P L L + LS+NQ +P +
Sbjct: 86 NKISKISPGAFAPLVKLERLYLSKNQLK-------------------------ELPEKMP 120
Query: 253 NLKSLLQLDLSENQLIGSIPLSFGNLSRLTLMSLFNNLL--SGSLPPILGNLKSLSALGL 310
K+L +L + EN++ F L+++ ++ L N L SG +K LS + +
Sbjct: 121 --KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRI 178
Query: 311 HINQLSGVIPSSIGNLSSLRALYLYNNGLCGFVPEEIRYLKSLSELELCKNHLSGVIPHS 370
++ IP + SL L+L N + ++ L +L++L L N +S V S
Sbjct: 179 ADTNIT-TIPQGLP--PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGS 235
Query: 371 IGNLTGLLLLNMCENHLSGPIPKSFKNLTSVERVLLNQNNLSG 413
+ N L L++ N L +P + ++ V L+ NN+S
Sbjct: 236 LANTPHLRELHLNNNKLVK-VPGGLADHKYIQVVYLHNNNISA 277
Score = 29.6 bits (65), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 35/76 (46%)
Query: 471 PKLQVLDLSSNSIVGEIPVQLGKLFSLNKLILNLNQLSGGMPLELGSLTELQYLDLSANK 530
P +LDL +N I L +L+ LIL N++S P L +L+ L LS N+
Sbjct: 52 PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQ 111
Query: 531 LKSSIPKSIGNLLRLR 546
LK K L LR
Sbjct: 112 LKELPEKMPKTLQELR 127
>pdb|1XKU|A Chain A, Crystal Structure Of The Dimeric Protein Core Of Decorin,
The Archetypal Small Leucine-Rich Repeat Proteoglycan
Length = 330
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 58/230 (25%), Positives = 107/230 (46%), Gaps = 9/230 (3%)
Query: 282 TLMSLFNNLLSGSLPPILGNLKSLSALGLHINQLSGVIPSSIGNLSSLRALYLYNNGLCG 341
L+ L NN ++ NLK+L L L N++S + P + L L LYL N L
Sbjct: 55 ALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQL-K 113
Query: 342 FVPEEIRYLKSLSELELCKNHLSGVIPHSIGNLTGLLLLNMCENHL--SGPIPKSFKNLT 399
+PE++ K+L EL + +N ++ V L ++++ + N L SG +F+ +
Sbjct: 114 ELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMK 171
Query: 400 SVERVLLNQNNLSGKVYEAFGDHPNLTFLNLSQNNFCGEISFNWRNFPKLGTFIVSVNNI 459
+ + + N++ G P+LT L+L N + + + L +S N+I
Sbjct: 172 KLSYIRIADTNITTI---PQGLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSI 228
Query: 460 SGSIPPEIGDSPKLQVLDLSSNSIVGEIPVQLGKLFSLNKLILNLNQLSG 509
S + ++P L+ L L++N +V ++P L + + L+ N +S
Sbjct: 229 SAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISA 277
Score = 32.3 bits (72), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 63/283 (22%), Positives = 109/283 (38%), Gaps = 39/283 (13%)
Query: 133 HLNQLRILYFDVNQLHGSIPPEIGQLSLINVLALCHNNLYGSIPSSLGNLSNLANFYFNN 192
HL ++ + ++ +PP+ L L N N + NL NL N
Sbjct: 32 HLRVVQCSDLGLEKVPKDLPPDTALLDLQN------NKITEIKDGDFKNLKNLHTLILIN 85
Query: 193 NSLFDSIPLVLGNLNSLSTMDLSQNQFXXXXXXXXXXXXXXXXXXXXXXXFSGSIPSIIG 252
N + P L L + LS+NQ +P +
Sbjct: 86 NKISKISPGAFAPLVKLERLYLSKNQLK-------------------------ELPEKMP 120
Query: 253 NLKSLLQLDLSENQLIGSIPLSFGNLSRLTLMSLFNNLL--SGSLPPILGNLKSLSALGL 310
K+L +L + EN++ F L+++ ++ L N L SG +K LS + +
Sbjct: 121 --KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRI 178
Query: 311 HINQLSGVIPSSIGNLSSLRALYLYNNGLCGFVPEEIRYLKSLSELELCKNHLSGVIPHS 370
++ IP + SL L+L N + ++ L +L++L L N +S V S
Sbjct: 179 ADTNIT-TIPQGLP--PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGS 235
Query: 371 IGNLTGLLLLNMCENHLSGPIPKSFKNLTSVERVLLNQNNLSG 413
+ N L L++ N L +P + ++ V L+ NN+S
Sbjct: 236 LANTPHLRELHLNNNKLVK-VPGGLADHKYIQVVYLHNNNISA 277
Score = 29.6 bits (65), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 35/76 (46%)
Query: 471 PKLQVLDLSSNSIVGEIPVQLGKLFSLNKLILNLNQLSGGMPLELGSLTELQYLDLSANK 530
P +LDL +N I L +L+ LIL N++S P L +L+ L LS N+
Sbjct: 52 PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQ 111
Query: 531 LKSSIPKSIGNLLRLR 546
LK K L LR
Sbjct: 112 LKELPEKMPKTLQELR 127
>pdb|1W8A|A Chain A, Third Lrr Domain Of Drosophila Slit
Length = 192
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 46/88 (52%)
Query: 250 IIGNLKSLLQLDLSENQLIGSIPLSFGNLSRLTLMSLFNNLLSGSLPPILGNLKSLSALG 309
+ G L L++L+L NQL G P +F S + + L N + + L L L
Sbjct: 49 LFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLN 108
Query: 310 LHINQLSGVIPSSIGNLSSLRALYLYNN 337
L+ NQ+S V+P S +L+SL +L L +N
Sbjct: 109 LYDNQISCVMPGSFEHLNSLTSLNLASN 136
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/87 (35%), Positives = 44/87 (50%)
Query: 491 LGKLFSLNKLILNLNQLSGGMPLELGSLTELQYLDLSANKLKSSIPKSIGNLLRLRYLDL 550
G+L L KL L NQL+G P + +Q L L NK+K K L +L+ L+L
Sbjct: 50 FGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNL 109
Query: 551 SNNQFGHKIPIELEKLIHLSELDLSYN 577
+NQ +P E L L+ L+L+ N
Sbjct: 110 YDNQISCVMPGSFEHLNSLTSLNLASN 136
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 39/87 (44%)
Query: 83 FSSFPHLVQLNLSFNIFFGIIPPQIGNLSKLQYLDLGSNQLSGVIPPEIGHLNQLRILYF 142
F PHLV+L L N GI P S +Q L LG N++ + L+QL+ L
Sbjct: 50 FGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNL 109
Query: 143 DVNQLHGSIPPEIGQLSLINVLALCHN 169
NQ+ +P L+ + L L N
Sbjct: 110 YDNQISCVMPGSFEHLNSLTSLNLASN 136
Score = 34.3 bits (77), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 41/88 (46%)
Query: 298 ILGNLKSLSALGLHINQLSGVIPSSIGNLSSLRALYLYNNGLCGFVPEEIRYLKSLSELE 357
+ G L L L L NQL+G+ P++ S ++ L L N + + L L L
Sbjct: 49 LFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLN 108
Query: 358 LCKNHLSGVIPHSIGNLTGLLLLNMCEN 385
L N +S V+P S +L L LN+ N
Sbjct: 109 LYDNQISCVMPGSFEHLNSLTSLNLASN 136
Score = 33.1 bits (74), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 37/87 (42%)
Query: 275 FGNLSRLTLMSLFNNLLSGSLPPILGNLKSLSALGLHINQLSGVIPSSIGNLSSLRALYL 334
FG L L + L N L+G P + L L N++ + L L+ L L
Sbjct: 50 FGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNL 109
Query: 335 YNNGLCGFVPEEIRYLKSLSELELCKN 361
Y+N + +P +L SL+ L L N
Sbjct: 110 YDNQISCVMPGSFEHLNSLTSLNLASN 136
Score = 31.2 bits (69), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 27/97 (27%), Positives = 43/97 (44%)
Query: 323 IGNLSSLRALYLYNNGLCGFVPEEIRYLKSLSELELCKNHLSGVIPHSIGNLTGLLLLNM 382
G L L L L N L G P + EL+L +N + + L L LN+
Sbjct: 50 FGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNL 109
Query: 383 CENHLSGPIPKSFKNLTSVERVLLNQNNLSGKVYEAF 419
+N +S +P SF++L S+ + L N + + A+
Sbjct: 110 YDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHLAW 146
Score = 30.0 bits (66), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 45/94 (47%)
Query: 350 LKSLSELELCKNHLSGVIPHSIGNLTGLLLLNMCENHLSGPIPKSFKNLTSVERVLLNQN 409
L L +LEL +N L+G+ P++ + + L + EN + K F L ++ + L N
Sbjct: 53 LPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDN 112
Query: 410 NLSGKVYEAFGDHPNLTFLNLSQNNFCGEISFNW 443
+S + +F +LT LNL+ N F W
Sbjct: 113 QISCVMPGSFEHLNSLTSLNLASNPFNCNCHLAW 146
>pdb|2WFH|A Chain A, The Human Slit 2 Dimerization Domain D4
pdb|2WFH|B Chain B, The Human Slit 2 Dimerization Domain D4
Length = 193
Score = 43.1 bits (100), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 37/126 (29%), Positives = 59/126 (46%), Gaps = 3/126 (2%)
Query: 318 VIPSSIGNLSSLRALYLYNNGLCGFVPEEIRYLKSLSELELCKNHLSGVIPHSIGNLTGL 377
V+P I + LYL N VP+E+ K L+ ++L N +S + S N+T L
Sbjct: 24 VLPKGIPR--DVTELYLDGNQF-TLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQL 80
Query: 378 LLLNMCENHLSGPIPKSFKNLTSVERVLLNQNNLSGKVYEAFGDHPNLTFLNLSQNNFCG 437
L L + N L P++F L S+ + L+ N++S AF D L+ L + N
Sbjct: 81 LTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLYC 140
Query: 438 EISFNW 443
+ + W
Sbjct: 141 DCNMQW 146
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 32/93 (34%), Positives = 46/93 (49%)
Query: 247 IPSIIGNLKSLLQLDLSENQLIGSIPLSFGNLSRLTLMSLFNNLLSGSLPPILGNLKSLS 306
+P + N K L +DLS N++ SF N+++L + L N L P LKSL
Sbjct: 46 VPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLR 105
Query: 307 ALGLHINQLSGVIPSSIGNLSSLRALYLYNNGL 339
L LH N +S V + +LS+L L + N L
Sbjct: 106 LLSLHGNDISVVPEGAFNDLSALSHLAIGANPL 138
Score = 36.2 bits (82), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 36/110 (32%), Positives = 50/110 (45%), Gaps = 3/110 (2%)
Query: 255 KSLLQLDLSENQLIGSIPLSFGNLSRLTLMSLFNNLLSGSLPPILGNLKSLSALGLHINQ 314
+ + +L L NQ +P N LTL+ L NN +S N+ L L L N+
Sbjct: 31 RDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNR 89
Query: 315 LSGVIPSSIGNLSSLRALYLYNNGLCGFVPE-EIRYLKSLSELELCKNHL 363
L + P + L SLR L L+ N + VPE L +LS L + N L
Sbjct: 90 LRCIPPRTFDGLKSLRLLSLHGNDI-SVVPEGAFNDLSALSHLAIGANPL 138
Score = 34.7 bits (78), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 25/98 (25%), Positives = 46/98 (46%), Gaps = 2/98 (2%)
Query: 100 FGIIPPQIGNLSKLQYLDLGSNQLSGVIPPEIGHLNQLRILYFDVNQLHGSIPPEIGQLS 159
F ++P ++ N L +DL +N++S + ++ QL L N+L P L
Sbjct: 43 FTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLK 102
Query: 160 LINVLALCHNNLYGSIPS-SLGNLSNLANFYFNNNSLF 196
+ +L+L H N +P + +LS L++ N L+
Sbjct: 103 SLRLLSL-HGNDISVVPEGAFNDLSALSHLAIGANPLY 139
Score = 32.7 bits (73), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 35/127 (27%), Positives = 59/127 (46%), Gaps = 12/127 (9%)
Query: 56 ISCNQAG-----RVISINLSSMALNG---TLQEFAFSSFPHLVQLNLSFNIFFGIIPPQI 107
+ C+ G + I +++ + L+G TL S++ HL ++LS N +
Sbjct: 15 VRCSNKGLKVLPKGIPRDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSF 74
Query: 108 GNLSKLQYLDLGSNQLSGVIPPEIGHLNQLRILYFDVNQLHGSIPPE--IGQLSLINVLA 165
N+++L L L N+L + P L LR+L N + S+ PE LS ++ LA
Sbjct: 75 SNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDI--SVVPEGAFNDLSALSHLA 132
Query: 166 LCHNNLY 172
+ N LY
Sbjct: 133 IGANPLY 139
Score = 30.0 bits (66), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 34/100 (34%), Positives = 47/100 (47%), Gaps = 7/100 (7%)
Query: 504 LNQLSGGMPLELGSLTELQYLDLSANKLKSSIPKSIGNLLRLRYLDLSNNQFGHKIPIEL 563
L L G+P ++ TEL YLD + L +PK + N L +DLSNN+
Sbjct: 22 LKVLPKGIPRDV---TEL-YLDGNQFTL---VPKELSNYKHLTLIDLSNNRISTLSNQSF 74
Query: 564 EKLIHLSELDLSYNFLGEEIPFQICNVKSLEKLNLCHNNL 603
+ L L LSYN L P +KSL L+L N++
Sbjct: 75 SNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDI 114
>pdb|2XOT|A Chain A, Crystal Structure Of Neuronal Leucine Rich Repeat Protein
Amigo-1
pdb|2XOT|B Chain B, Crystal Structure Of Neuronal Leucine Rich Repeat Protein
Amigo-1
Length = 361
Score = 42.4 bits (98), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 55/171 (32%), Positives = 80/171 (46%), Gaps = 32/171 (18%)
Query: 367 IPHSIGNLTGLLLLNMCENHLSG-PIPKSFKNLTSVERVLLNQNNLSGKVYEAFGDHPNL 425
+P S+ + T LL ++ N+LS + LT++ +LL+ N+L+ EAF PNL
Sbjct: 33 VPQSLPSYTALL--DLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNL 90
Query: 426 TFLNLSQNNFCGEISFNWRNFPKLGTFIVSVNNISGSIPPEIGDSPKLQVLDLSSNSIVG 485
+L+LS N + L F+ S D L+VL L +N IV
Sbjct: 91 RYLDLSSN-----------HLHTLDEFLFS-------------DLQALEVLLLYNNHIVV 126
Query: 486 EIPVQLGKLFSLNKLILNLNQLSGGMPLEL----GSLTELQYLDLSANKLK 532
+ L KL L+ NQ+S P+EL L +L LDLS+NKLK
Sbjct: 127 VDRNAFEDMAQLQKLYLSQNQIS-RFPVELIKDGNKLPKLMLLDLSSNKLK 176
Score = 35.4 bits (80), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 45/153 (29%), Positives = 74/153 (48%), Gaps = 8/153 (5%)
Query: 289 NLLSGS---LPPILGNLKSLSAL-GLHINQLSGVIPS-SIGNLSSLRALYLYNNGLCGFV 343
N+LS S LP + +L S +AL L N LS + + L++L +L L +N L
Sbjct: 21 NILSCSKQQLPNVPQSLPSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFIS 80
Query: 344 PEEIRYLKSLSELELCKNHLSGVIPHSIGNLTGLLLLNMCENHLSGPIPKSFKNLTSVER 403
E + +L L+L NHL + +L L +L + NH+ +F+++ +++
Sbjct: 81 SEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQK 140
Query: 404 VLLNQNNLSGKVYEAFGDH---PNLTFLNLSQN 433
+ L+QN +S E D P L L+LS N
Sbjct: 141 LYLSQNQISRFPVELIKDGNKLPKLMLLDLSSN 173
>pdb|3ZYJ|A Chain A, Netring1 In Complex With Ngl1
pdb|3ZYJ|C Chain C, Netring1 In Complex With Ngl1
Length = 440
Score = 42.0 bits (97), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 75/257 (29%), Positives = 109/257 (42%), Gaps = 42/257 (16%)
Query: 359 CKNHLSGVI---------PHSIGNLTGLLLLNMCENHLSGPIPKSFKNLTSVERVLLNQN 409
C N S VI P I T LLN+ EN + SFK+L +E + L++N
Sbjct: 41 CSNQFSKVICVRKNLREVPDGIS--TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRN 98
Query: 410 NLSGKVYEAFGDHPNLTFLNLSQNNFCGEISFNWRNFPKLGTFIVSVNNISGSIPPEIGD 469
++ AF NL L L N P G F+
Sbjct: 99 HIRTIEIGAFNGLANLNTLELFDNRL--------TTIPN-GAFVY--------------- 134
Query: 470 SPKLQVLDLSSNSIVGEIPVQLGKLFSLNKLIL-NLNQLSGGMPLELGSLTELQYLDLSA 528
KL+ L L +N I ++ SL +L L L +LS L+ L+YL+L+
Sbjct: 135 LSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAM 194
Query: 529 NKLKSSIPKSIGNLLRLRYLDLSNNQFGHKIPIELEKLIHLSELDL--SYNFLGEEIPFQ 586
L+ IP ++ L++L LDLS N P + L+HL +L + S + E F
Sbjct: 195 CNLR-EIP-NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFD 252
Query: 587 ICNVKSLEKLNLCHNNL 603
N++SL ++NL HNNL
Sbjct: 253 --NLQSLVEINLAHNNL 267
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 56/196 (28%), Positives = 90/196 (45%), Gaps = 10/196 (5%)
Query: 254 LKSLLQLDLSENQLIGSIPLSFGNLSRLTLMSLFNNLLSGSLPPILGNLKSLSALGL-HI 312
L +L L+L +N+L +F LS+L + L NN + + SL L L +
Sbjct: 111 LANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGEL 170
Query: 313 NQLSGVIPSSIGNLSSLRALYLYNNGLCGF--VPEEIRYLKSLSELELCKNHLSGVIPHS 370
+LS + + LS+LR L L +C +P +K L EL+L NHLS + P S
Sbjct: 171 KRLSYISEGAFEGLSNLRYLNL---AMCNLREIPNLTPLIK-LDELDLSGNHLSAIRPGS 226
Query: 371 IGNLTGLLLLNMCENHLSGPIPKSFKNLTSVERVLLNQNNLSGKVYEAFGDHPNLTFLNL 430
L L L M ++ + +F NL S+ + L NNL+ ++ F +L ++L
Sbjct: 227 FQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHL 286
Query: 431 SQNNF---CGEISFNW 443
N + C + +W
Sbjct: 287 HHNPWNCNCDILWLSW 302
Score = 29.6 bits (65), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 68/273 (24%), Positives = 100/273 (36%), Gaps = 60/273 (21%)
Query: 103 IPPQIGNLSKLQYLDLGSNQLSGVIPPEIGHLNQLRILYFDVNQLHGSIPPEIGQ---LS 159
+P I ++L L+L NQ+ + HL L IL N + EIG L+
Sbjct: 58 VPDGISTNTRL--LNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTI---EIGAFNGLA 112
Query: 160 LINVLALCHNNLYGSIPSSLGNLSNLANFYFNNNSLFDSIP-LVLGNLNSLSTMDLSQNQ 218
+N L L N L + LS L + NN + +SIP + SL +DL
Sbjct: 113 NLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPI-ESIPSYAFNRIPSLRRLDL---- 167
Query: 219 FXXXXXXXXXXXXXXXXXXXXXXXFSGSIPSIIGNLKSLLQLDLSENQLIGSIPLSFGNL 278
G LK L +SE G L + NL
Sbjct: 168 ---------------------------------GELKRLSY--ISEGAFEGLSNLRYLNL 192
Query: 279 SRLTLMSLFNNLLSGSLPPILGNLKSLSALGLHINQLSGVIPSSIGNLSSLRALYLYNNG 338
+ L + P L L L L L N LS + P S L L+ L++ +
Sbjct: 193 AMCNLREI----------PNLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQ 242
Query: 339 LCGFVPEEIRYLKSLSELELCKNHLSGVIPHSI 371
+ L+SL E+ L N+L+ ++PH +
Sbjct: 243 IQVIERNAFDNLQSLVEINLAHNNLT-LLPHDL 274
>pdb|4G8A|A Chain A, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
pdb|4G8A|B Chain B, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
Length = 635
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 59/225 (26%), Positives = 100/225 (44%), Gaps = 10/225 (4%)
Query: 256 SLLQLDLSENQLIGSIPLSFGNLSRLTLMSL-FNNLLSGSLPPILGNLKSLSALGLHINQ 314
SL LDLS N +I ++ +F L +L + +NL S + +L++L L +
Sbjct: 398 SLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTH 456
Query: 315 LSGVIPSSIGNLSSLRALYLYNNGLC-GFVPEEIRYLKSLSELELCKNHLSGVIPHSIGN 373
LSSL L + N F+P+ L++L+ L+L + L + P + +
Sbjct: 457 TRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNS 516
Query: 374 LTGLLLLNMCENHLSGPIPKSFKNLTSVERVLLNQNNLSGKVYEAFGDHPN-LTFLNLSQ 432
L+ L +LNM N+ +K L S++ + + N++ + P+ L FLNL+Q
Sbjct: 517 LSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQ 576
Query: 433 NNF---CGEISF-NWRNFPKLGTFIVSVNNISGSIPPEIGDSPKL 473
N+F C SF W +V V + + P + P L
Sbjct: 577 NDFACTCEHQSFLQW--IKDQRQLLVEVERMECATPSDKQGMPVL 619
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 42/161 (26%), Positives = 74/161 (45%), Gaps = 3/161 (1%)
Query: 249 SIIGNLKSLLQLDLSENQLIGSIPLSFGNLSRLTLMSLF-NNLLSGSLPPILGNLKSLSA 307
S+ +L++L+ LD+S + F LS L ++ + N+ LP I L++L+
Sbjct: 439 SVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTF 498
Query: 308 LGLHINQLSGVIPSSIGNLSSLRALYLYNNGLCGFVPEEIRYLKSLSELELCKNHLSGVI 367
L L QL + P++ +LSSL+ L + +N + L SL L+ NH+
Sbjct: 499 LDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSK 558
Query: 368 PHSIGNL-TGLLLLNMCENHLSGPIP-KSFKNLTSVERVLL 406
+ + + L LN+ +N + +SF +R LL
Sbjct: 559 KQELQHFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQLL 599
Score = 33.1 bits (74), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 44/87 (50%), Gaps = 7/87 (8%)
Query: 52 AWLGISCNQAGRVISINLSSMALNGTLQEFAFSSFPHLVQLNLSFNIFFGI-IPPQIGNL 110
A+ G+S Q + NL+S L+ F L +LN++ N+ +P NL
Sbjct: 119 AFSGLSSLQKLVAVETNLAS------LENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNL 172
Query: 111 SKLQYLDLGSNQLSGVIPPEIGHLNQL 137
+ L++LDL SN++ + ++ L+Q+
Sbjct: 173 TNLEHLDLSSNKIQSIYCTDLRVLHQM 199
Score = 30.0 bits (66), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 27/96 (28%), Positives = 48/96 (50%), Gaps = 5/96 (5%)
Query: 518 LTELQYLDLSANKLKSS-IPKSIGNLLRLRYLDLSNNQFGHKIPIELEKLIHLSELDLSY 576
L+ L+ L ++ N + + +P L L +LDLS Q P L L L++S+
Sbjct: 468 LSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSH 527
Query: 577 N--FLGEEIPFQICNVKSLEKLNLCHNNLLGSFQQK 610
N F + P++ N SL+ L+ N+++ S +Q+
Sbjct: 528 NNFFSLDTFPYKCLN--SLQVLDYSLNHIMTSKKQE 561
Score = 28.9 bits (63), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 36/70 (51%), Gaps = 2/70 (2%)
Query: 247 IPSIIGNLKSLLQLDLSENQLIGSIPLSFGNLSRLTLMSL-FNNLLSGSLPPILGNLKSL 305
+P I L++L LDLS+ QL P +F +LS L ++++ NN S P L SL
Sbjct: 486 LPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPY-KCLNSL 544
Query: 306 SALGLHINQL 315
L +N +
Sbjct: 545 QVLDYSLNHI 554
>pdb|3FXI|A Chain A, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
pdb|3FXI|B Chain B, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
Length = 605
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 61/238 (25%), Positives = 102/238 (42%), Gaps = 10/238 (4%)
Query: 243 FSGSIPSIIGNLKSLLQLDLSENQLIGSIPLSFGNLSRLTLMSL-FNNLLSGSLPPILGN 301
F G SL LDLS N +I ++ +F L +L + +NL S + +
Sbjct: 361 FKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLS 419
Query: 302 LKSLSALGLHINQLSGVIPSSIGNLSSLRALYLYNNGLC-GFVPEEIRYLKSLSELELCK 360
L++L L + LSSL L + N F+P+ L++L+ L+L +
Sbjct: 420 LRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQ 479
Query: 361 NHLSGVIPHSIGNLTGLLLLNMCENHLSGPIPKSFKNLTSVERVLLNQNNLSGKVYEAFG 420
L + P + +L+ L +LNM N+ +K L S++ + + N++ +
Sbjct: 480 CQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQ 539
Query: 421 DHPN-LTFLNLSQNNF---CGEISF-NWRNFPKLGTFIVSVNNISGSIPPEIGDSPKL 473
P+ L FLNL+QN+F C SF W +V V + + P + P L
Sbjct: 540 HFPSSLAFLNLTQNDFACTCEHQSFLQW--IKDQRQLLVEVERMECATPSDKQGMPVL 595
Score = 33.5 bits (75), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 44/87 (50%), Gaps = 7/87 (8%)
Query: 52 AWLGISCNQAGRVISINLSSMALNGTLQEFAFSSFPHLVQLNLSFNIFFGI-IPPQIGNL 110
A+ G+S Q + NL+S L+ F L +LN++ N+ +P NL
Sbjct: 95 AFSGLSSLQKLVAVETNLAS------LENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNL 148
Query: 111 SKLQYLDLGSNQLSGVIPPEIGHLNQL 137
+ L++LDL SN++ + ++ L+Q+
Sbjct: 149 TNLEHLDLSSNKIQSIYCTDLRVLHQM 175
Score = 30.4 bits (67), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 76/302 (25%), Positives = 126/302 (41%), Gaps = 46/302 (15%)
Query: 338 GLCGFVPEEIR------YLKSLSELELCKNHLSGVIPHSIGNLTGLLLLNMCEN----HL 387
GLC EE R YL + +L C L+ V S+ ++T + + N HL
Sbjct: 253 GLCNLTIEEFRLAYLDYYLDDIIDLFNC---LTNVSSFSLVSVTIERVKDFSYNFGWQHL 309
Query: 388 S------GPIPKSFKNLTSVERVLLNQNNLSGKVYEAFGDHPNLTFLNLSQNNF-----C 436
G P L S++R+ N E D P+L FL+LS+N C
Sbjct: 310 ELVNCKFGQFPT--LKLKSLKRLTFTSNKGGNAFSEV--DLPSLEFLDLSRNGLSFKGCC 365
Query: 437 GEISFNWRNFPKLGTFIVSVNNISGSIPPEIGDSPKLQVLDLSSNSI--VGEIPVQLGKL 494
+ F + L +S N + +G +L+ LD +++ + E V L
Sbjct: 366 SQSDFGTTSLKYLD---LSFNGVITMSSNFLG-LEQLEHLDFQHSNLKQMSEFSVFL--- 418
Query: 495 FSLNKLI-LNLNQLSGGMPLE--LGSLTELQYLDLSANKLKSS-IPKSIGNLLRLRYLDL 550
SL LI L+++ + L+ L+ L ++ N + + +P L L +LDL
Sbjct: 419 -SLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDL 477
Query: 551 SNNQFGHKIPIELEKLIHLSELDLSYN--FLGEEIPFQICNVKSLEKLNLCHNNLLGSFQ 608
S Q P L L L++S+N F + P++ N SL+ L+ N+++ S +
Sbjct: 478 SQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLN--SLQVLDYSLNHIMTSKK 535
Query: 609 QK 610
Q+
Sbjct: 536 QE 537
>pdb|4B8C|D Chain D, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|J Chain J, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|K Chain K, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|L Chain L, Nuclease Module Of The Yeast Ccr4-Not Complex
Length = 727
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 37/109 (33%), Positives = 55/109 (50%), Gaps = 12/109 (11%)
Query: 109 NLSKLQYLDLGSNQLSGVIPPEIGHLNQLRILYFDVNQLHGSIPPEIGQLSLINVLALCH 168
+LS LQ ++ +N I + L LY + N L +P EI LS + VL L H
Sbjct: 230 DLSNLQIFNISAN---------IFKYDFLTRLYLNGNSL-TELPAEIKNLSNLRVLDLSH 279
Query: 169 NNLYGSIPSSLGNLSNLANFYFNNNSLFDSIPLVLGNLNSLSTMDLSQN 217
N L S+P+ LG+ L FYF +N + ++P GNL +L + + N
Sbjct: 280 NRL-TSLPAELGSCFQLKYFYFFDN-MVTTLPWEFGNLCNLQFLGVEGN 326
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 39/76 (51%), Gaps = 2/76 (2%)
Query: 462 SIPPEIGDSPKLQVLDLSSNSIVGEIPVQLGKLFSLNKLILNLNQLSGGMPLELGSLTEL 521
+P EI + L+VLDLS N + +P +LG F L K + + +P E G+L L
Sbjct: 261 ELPAEIKNLSNLRVLDLSHNRLTS-LPAELGSCFQL-KYFYFFDNMVTTLPWEFGNLCNL 318
Query: 522 QYLDLSANKLKSSIPK 537
Q+L + N L+ K
Sbjct: 319 QFLGVEGNPLEKQFLK 334
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 35/111 (31%), Positives = 56/111 (50%), Gaps = 11/111 (9%)
Query: 246 SIPSIIGNLKSLLQLDLSENQLIGSIPLSFGNLSRLTLMSLFNNLLSGSLPPILGNLKSL 305
+P+ I NL +L LDLS N+L S+P G+ +L F+N+++ +LP GNL +L
Sbjct: 261 ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQLKYFYFFDNMVT-TLPWEFGNLCNL 318
Query: 306 SALGLHINQLSG-----VIPSSIGNLSSLRALYLYNNGLCGFVPEEIRYLK 351
LG+ N L + S+ L YL +N +P E R+++
Sbjct: 319 QFLGVEGNPLEKQFLKILTEKSVTGL----IFYLRDNRPEIPLPHERRFIE 365
Score = 38.9 bits (89), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 41/128 (32%), Positives = 65/128 (50%), Gaps = 5/128 (3%)
Query: 469 DSPKLQVLDLSSNSIVGEIPVQLGKLFSLNKLILNLNQLSGGMPLELGSLTELQYLDLSA 528
D LDLS+ I I + K L +L LN N L+ +P E+ +L+ L+ LDLS
Sbjct: 222 DDQLWHALDLSNLQIFN-ISANIFKYDFLTRLYLNGNSLTE-LPAEIKNLSNLRVLDLSH 279
Query: 529 NKLKSSIPKSIGNLLRLRYLDLSNNQFGHKIPIELEKLIHLSELDLSYNFLGEEIPFQIC 588
N+L +S+P +G+ +L+Y +N +P E L +L L + N L ++ +I
Sbjct: 280 NRL-TSLPAELGSCFQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGNPLEKQF-LKIL 336
Query: 589 NVKSLEKL 596
KS+ L
Sbjct: 337 TEKSVTGL 344
Score = 38.9 bits (89), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 39/69 (56%), Gaps = 2/69 (2%)
Query: 103 IPPQIGNLSKLQYLDLGSNQLSGVIPPEIGHLNQLRILYFDVNQLHGSIPPEIGQLSLIN 162
+P +I NLS L+ LDL N+L+ +P E+G QL+ YF + + ++P E G L +
Sbjct: 262 LPAEIKNLSNLRVLDLSHNRLTS-LPAELGSCFQLKYFYF-FDNMVTTLPWEFGNLCNLQ 319
Query: 163 VLALCHNNL 171
L + N L
Sbjct: 320 FLGVEGNPL 328
Score = 32.3 bits (72), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 34/136 (25%), Positives = 56/136 (41%), Gaps = 28/136 (20%)
Query: 185 LANFYFNNNSLFDSIPLVLGNLNSLSTMDLSQNQFXXXXXXXXXXXXXXXXXXXXXXXFS 244
L Y N NSL + +P + NL++L +DLS N+
Sbjct: 249 LTRLYLNGNSLTE-LPAEIKNLSNLRVLDLSHNRLT------------------------ 283
Query: 245 GSIPSIIGNLKSLLQLDLSENQLIGSIPLSFGNLSRLTLMSLFNNLLSGSLPPILGNLKS 304
S+P+ +G+ L +N ++ ++P FGNL L + + N L IL KS
Sbjct: 284 -SLPAELGSCFQLKYFYFFDN-MVTTLPWEFGNLCNLQFLGVEGNPLEKQFLKILTE-KS 340
Query: 305 LSALGLHINQLSGVIP 320
++ L ++ IP
Sbjct: 341 VTGLIFYLRDNRPEIP 356
>pdb|4FHO|A Chain A, Crystal Structure Of An Internalin C2 (Inlc2) From
Listeria Monocytogenes Str. 4b F2365 At 1.90 A
Resolution
pdb|4FHO|B Chain B, Crystal Structure Of An Internalin C2 (Inlc2) From
Listeria Monocytogenes Str. 4b F2365 At 1.90 A
Resolution
Length = 231
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 37/113 (32%), Positives = 60/113 (53%), Gaps = 8/113 (7%)
Query: 107 IGNLSKLQYLDLGSNQLSGVIPPEIGHLNQLRILYFDVNQLHGSIPPEIGQLSLINVLAL 166
I L ++ LDL S Q++ V P + L+ L++LY D+NQ+ +I P G L+ + L++
Sbjct: 109 IAGLQSIKTLDLTSTQITDVTP--LAGLSNLQVLYLDLNQIT-NISPLAG-LTNLQYLSI 164
Query: 167 CHNNLYGSIPSSLGNLSNLANFYFNNNSLFDSIPLVLGNLNSLSTMDLSQNQF 219
+N + P L NLS L ++N + D P L +L +L + L NQ
Sbjct: 165 GNNQVNDLTP--LANLSKLTTLRADDNKISDISP--LASLPNLIEVHLKDNQI 213
Score = 38.9 bits (89), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 41/135 (30%), Positives = 67/135 (49%), Gaps = 10/135 (7%)
Query: 249 SIIGNLKSLLQLDLSENQLIGSIPLSFGNLSRLTLMSLFNNLLSGSLPPILGNLKSLSAL 308
S I L+S+ LDL+ Q+ PL+ LS L ++ L N ++ P L L +L L
Sbjct: 107 SAIAGLQSIKTLDLTSTQITDVTPLA--GLSNLQVLYLDLNQITNISP--LAGLTNLQYL 162
Query: 309 GLHINQLSGVIPSSIGNLSSLRALYLYNNGLCGFVPEEIRYLKSLSELELCKNHLSGVIP 368
+ NQ++ + P + NLS L L +N + P + L +L E+ L N +S V P
Sbjct: 163 SIGNNQVNDLTP--LANLSKLTTLRADDNKISDISP--LASLPNLIEVHLKDNQISDVSP 218
Query: 369 HSIGNLTGLLLLNMC 383
+ NL+ L ++ +
Sbjct: 219 --LANLSNLFIVTLT 231
Score = 30.0 bits (66), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 34/103 (33%), Positives = 51/103 (49%), Gaps = 8/103 (7%)
Query: 83 FSSFPHLVQLNLSFNIFFGIIPPQIGNLSKLQYLDLGSNQLSGVIPPEIGHLNQLRILYF 142
+ +L L L N I P + L+ LQYL +G+NQ++ + P + +L++L L
Sbjct: 131 LAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNNQVNDLTP--LANLSKLTTLRA 186
Query: 143 DVNQLHGSIPPEIGQLSLINVLALCHNNLYGSIPSSLGNLSNL 185
D N++ I P +LI V L N + P L NLSNL
Sbjct: 187 DDNKI-SDISPLASLPNLIEV-HLKDNQISDVSP--LANLSNL 225
>pdb|2Z7X|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 520
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 49/171 (28%), Positives = 82/171 (47%), Gaps = 10/171 (5%)
Query: 372 GNLTGLLLLNMCENHLSGPIPKSFKNLTSVERVLLNQNNLS--GKVYEAFGDHPNLTFLN 429
++ L L+ N L+ + ++ +LT +E ++L N L K+ E +L L+
Sbjct: 321 SKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLD 380
Query: 430 LSQNNFCGEISFNWRNFPKLGT-FIVSVNNISGSIPPEIGDS--PKLQVLDLSSNSIVGE 486
+SQN+ +S++ + T ++S+N S + I P+++VLDL SN I
Sbjct: 381 ISQNS----VSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLPPRIKVLDLHSNKI-KS 435
Query: 487 IPVQLGKLFSLNKLILNLNQLSGGMPLELGSLTELQYLDLSANKLKSSIPK 537
IP Q+ KL +L +L + NQL LT LQ + L N S P+
Sbjct: 436 IPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR 486
Score = 38.5 bits (88), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 47/165 (28%), Positives = 71/165 (43%), Gaps = 9/165 (5%)
Query: 190 FNNNSLFDSIPLVLGNLNSLSTMDLSQNQFXXXXXXXXXXXXXXXXXXXXXXXFSGSIPS 249
F+NN L D++ G+L L T+ L NQ S S
Sbjct: 331 FSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDE 390
Query: 250 IIGNL---KSLLQLDLSENQLIGSIPLSFGNLS-RLTLMSLFNNLLSGSLPPILGNLKSL 305
G+ KSLL L++S N L +I F L R+ ++ L +N + S+P + L++L
Sbjct: 391 KKGDCSWTKSLLSLNMSSNILTDTI---FRCLPPRIKVLDLHSNKIK-SIPKQVVKLEAL 446
Query: 306 SALGLHINQLSGVIPSSIGNLSSLRALYLYNNGLCGFVPEEIRYL 350
L + NQL V L+SL+ ++L+ N P I YL
Sbjct: 447 QELNVASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP-RIDYL 490
Score = 36.6 bits (83), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 35/119 (29%), Positives = 52/119 (43%), Gaps = 14/119 (11%)
Query: 35 DNASNVPSYSKSKISPCAWLGISCNQAGRVISINLSSMALNGTLQEFAFSSFPHLVQ-LN 93
D + N SY + K C+W ++S+N+SS L T+ F P ++ L+
Sbjct: 380 DISQNSVSYDEKK-GDCSW-------TKSLLSLNMSSNILTDTI----FRCLPPRIKVLD 427
Query: 94 LSFNIFFGIIPPQIGNLSKLQYLDLGSNQLSGVIPPEIGHLNQLRILYFDVNQLHGSIP 152
L N I P Q+ L LQ L++ SNQL V L L+ ++ N S P
Sbjct: 428 LHSNKIKSI-PKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 485
Score = 35.4 bits (80), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 52/169 (30%), Positives = 79/169 (46%), Gaps = 20/169 (11%)
Query: 441 FNWRNFPKLGTFIVSVNNISGSIPPEIGDSPKLQVLDLSSNSIVGEIPVQLGKLFSLNKL 500
N +NF GT +V + P +I SP L LD S+N + + G L L L
Sbjct: 302 MNIKNFTVSGTRMVHM-----LCPSKI--SPFLH-LDFSNNLLTDTVFENCGHLTELETL 353
Query: 501 ILNLNQLS-----GGMPLELGSLTELQYLDLSANKLKSSIPKSIGNLLR-LRYLDLSNNQ 554
IL +NQL M ++ S LQ LD+S N + K + + L L++S+N
Sbjct: 354 ILQMNQLKELSKIAEMTTQMKS---LQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNI 410
Query: 555 FGHKIPIELEKLIHLSELDLSYNFLGEEIPFQICNVKSLEKLNLCHNNL 603
I L I + LDL N + + IP Q+ +++L++LN+ N L
Sbjct: 411 LTDTIFRCLPPRIKV--LDLHSNKI-KSIPKQVVKLEALQELNVASNQL 456
Score = 33.9 bits (76), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 23/55 (41%), Positives = 34/55 (61%), Gaps = 5/55 (9%)
Query: 89 LVQLNLSFNIFFGI-IPPQIGNLSKLQYLDLGSNQL--SGVIPPEIGHLNQLRIL 140
L L+LSFN F + I + GN+S+L++L L + L S V+P I HLN ++L
Sbjct: 92 LKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKSSVLP--IAHLNISKVL 144
Score = 32.7 bits (73), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 46/195 (23%), Positives = 76/195 (38%), Gaps = 32/195 (16%)
Query: 108 GNLSKLQYLDLGSNQLSGVIPPEIGHLNQLRILYFDVNQLH--GSIPPEIGQLSLINVLA 165
+S +LD +N L+ + GHL +L L +NQL I Q+ + L
Sbjct: 321 SKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLD 380
Query: 166 LCHNNL-YGSIPSSLGNLSNLANFYFNNNSLFDSIPLVLGNLNSLSTMDLSQNQFXXXXX 224
+ N++ Y +L + ++N L D+I L + +DL N+
Sbjct: 381 ISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKI----- 433
Query: 225 XXXXXXXXXXXXXXXXXXFSGSIPSIIGNLKSLLQLDLSENQLIGSIPLS-FGNLSRLTL 283
SIP + L++L +L+++ NQL S+P F L+ L
Sbjct: 434 --------------------KSIPKQVVKLEALQELNVASNQL-KSVPDGIFDRLTSLQK 472
Query: 284 MSLFNNLLSGSLPPI 298
+ L N S P I
Sbjct: 473 IWLHTNPWDCSCPRI 487
Score = 32.3 bits (72), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 37/146 (25%), Positives = 59/146 (40%), Gaps = 24/146 (16%)
Query: 288 NNLLSGSLPPILGNLKSLSALGLHINQLSGV--IPSSIGNLSSLRALYLYNNGLCGFVPE 345
NNLL+ ++ G+L L L L +NQL + I + SL+ L + N + +
Sbjct: 333 NNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKK 392
Query: 346 -EIRYLKSLSELELCKNHLSGVI---------------------PHSIGNLTGLLLLNMC 383
+ + KSL L + N L+ I P + L L LN+
Sbjct: 393 GDCSWTKSLLSLNMSSNILTDTIFRCLPPRIKVLDLHSNKIKSIPKQVVKLEALQELNVA 452
Query: 384 ENHLSGPIPKSFKNLTSVERVLLNQN 409
N L F LTS++++ L+ N
Sbjct: 453 SNQLKSVPDGIFDRLTSLQKIWLHTN 478
Score = 30.4 bits (67), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 32/99 (32%), Positives = 49/99 (49%), Gaps = 6/99 (6%)
Query: 463 IPPEIGDSPKLQVLDLSSNSIVGEIPVQLGKLFSLNKLILNLNQLSGGMPLELGSLTELQ 522
+P ++ S K +L++S N I + L L LI++ N++ EL+
Sbjct: 15 VPKDL--SQKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELE 72
Query: 523 YLDLSANKLKSSIPKSIGNLLRLRYLDLSNNQFGHKIPI 561
YLDLS NKL + S + L++LDLS N F +PI
Sbjct: 73 YLDLSHNKL---VKISCHPTVNLKHLDLSFNAFD-ALPI 107
>pdb|2O6R|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B61
Length = 177
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 37/103 (35%), Positives = 51/103 (49%), Gaps = 5/103 (4%)
Query: 250 IIGNLKSLLQLDLSENQLIGSIPLS-FGNLSRLTLMSLFNNLLSGSLP-PILGNLKSLSA 307
+ L L +L LS+NQ I S+P F L++LT++ L N L SLP + L L
Sbjct: 47 VFDKLTQLTKLSLSQNQ-IQSLPDGVFDKLTKLTILYLHENKLQ-SLPNGVFDKLTQLKE 104
Query: 308 LGLHINQLSGVIPSSIGNLSSLRALYLYNNGLCGFVPEEIRYL 350
L L NQL V L+SL+ ++L+ N P I YL
Sbjct: 105 LALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP-RIDYL 146
Score = 33.1 bits (74), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 40/155 (25%), Positives = 62/155 (40%), Gaps = 21/155 (13%)
Query: 51 CAWLGISCNQAGRV-ISINLSSMALNGTLQEFAFSSFPHLVQLNLSFNIFFGIIPPQIGN 109
C+ I CN G + + S A L+ S PH V
Sbjct: 7 CSGTEIRCNSKGLTSVPTGIPSSATRLELESNKLQSLPHGV----------------FDK 50
Query: 110 LSKLQYLDLGSNQLSGVIPPEIGHLNQLRILYFDVNQLHGSIPPEI-GQLSLINVLALCH 168
L++L L L NQ+ + L +L ILY N+L S+P + +L+ + LAL
Sbjct: 51 LTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQ-SLPNGVFDKLTQLKELALDT 109
Query: 169 NNLYGSIPSSL-GNLSNLANFYFNNNSLFDSIPLV 202
N L S+P + L++L + + N S P +
Sbjct: 110 NQLK-SVPDGIFDRLTSLQKIWLHTNPWDCSCPRI 143
>pdb|3B2D|A Chain A, Crystal Structure Of Human Rp105MD-1 Complex
pdb|3B2D|B Chain B, Crystal Structure Of Human Rp105MD-1 Complex
Length = 603
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 99/380 (26%), Positives = 153/380 (40%), Gaps = 89/380 (23%)
Query: 274 SFGNLSRLTLMSLFNNLLSGSLPPILGNLKSLSALGLHINQLSGVIPSSIGNLSSLRALY 333
+F L LT + L ++ + LS L L N L + +S+ SL+ L+
Sbjct: 49 TFSRLMNLTFLDLTRCQINWIHEDTFQSHHQLSTLVLTGNPLIFMAETSLNGPKSLKHLF 108
Query: 334 LYNNGLCG--FVPEEIRYLKSLSELELCKNHLSGV-IPHSI--GNLTGLLLLNMCENHLS 388
L G+ F+P + L++L L L NH+S + P NL L N +++S
Sbjct: 109 LIQTGISNLEFIP--VHNLENLESLYLGSNHISSIKFPKDFPARNLKVLDFQNNAIHYIS 166
Query: 389 GPIPKSFKNLTSVERVL-----LNQNNLSG--------KVYEA--FGDHPNLTFL-NLSQ 432
+++ S+E+ + N NN+ G ++++ FG PNL+ + N Q
Sbjct: 167 R------EDMRSLEQAINLSLNFNGNNVKGIELGAFDSTIFQSLNFGGTPNLSVIFNGLQ 220
Query: 433 NNFCGEISFNWRNFPKLGTFIVSVNNISGSIPPEIGDSPKLQVLDLSSNSIVGEIPVQLG 492
N+ + W LGTF +I D D+SS + G +
Sbjct: 221 NSTTQSL---W-----LGTF------------EDIDDE------DISSAMLKGLCEM--- 251
Query: 493 KLFSLNKLILNLNQLSGGMPLELGSLTELQYLDLSANKLKSSIPKSIGNLLRLRYLDLSN 552
S+ L L ++ S T+LQ LDL+A LK +P + L L+ L LS
Sbjct: 252 ---SVESLNLQEHRFSDISSTTFQCFTQLQELDLTATHLK-GLPSGMKGLNLLKKLVLSV 307
Query: 553 NQFGHKIPIE-------------------------LEKLIHLSELDLSYNFL--GEEIPF 585
N F I LEKL +L LDLS+N + +
Sbjct: 308 NHFDQLCQISAANFPSLTHLYIRGNVKKLHLGVGCLEKLGNLQTLDLSHNDIEASDCCSL 367
Query: 586 QICNVKSLEKLNLCHNNLLG 605
Q+ N+ L+ LNL HN LG
Sbjct: 368 QLKNLSHLQTLNLSHNEPLG 387
>pdb|2Z66|A Chain A, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|B Chain B, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|C Chain C, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|D Chain D, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 306
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 42/154 (27%), Positives = 71/154 (46%), Gaps = 8/154 (5%)
Query: 326 LSSLRALYLYNNGLC-GFVPEEIRYLKSLSELELCKNHLSGVIPHSIGNLTGLLLLNMCE 384
LSSL L + N F+P+ L++L+ L+L + L + P + +L+ L +LNM
Sbjct: 149 LSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSH 208
Query: 385 NHLSGPIPKSFKNLTSVERVLLNQNNLSGKVYEAFGDHPN-LTFLNLSQNNF---CGEIS 440
N+ +K L S++ + + N++ + P+ L FLNL+QN+F C S
Sbjct: 209 NNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQS 268
Query: 441 F-NWRNFPKLGTFIVSVNNISGSIPPEIGDSPKL 473
F W +V V + + P + P L
Sbjct: 269 FLQW--IKDQRQLLVEVERMECATPSDKQGMPVL 300
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 42/161 (26%), Positives = 74/161 (45%), Gaps = 3/161 (1%)
Query: 249 SIIGNLKSLLQLDLSENQLIGSIPLSFGNLSRLTLMSLF-NNLLSGSLPPILGNLKSLSA 307
S+ +L++L+ LD+S + F LS L ++ + N+ LP I L++L+
Sbjct: 120 SVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTF 179
Query: 308 LGLHINQLSGVIPSSIGNLSSLRALYLYNNGLCGFVPEEIRYLKSLSELELCKNHLSGVI 367
L L QL + P++ +LSSL+ L + +N + L SL L+ NH+
Sbjct: 180 LDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSK 239
Query: 368 PHSIGNL-TGLLLLNMCENHLSGPIP-KSFKNLTSVERVLL 406
+ + + L LN+ +N + +SF +R LL
Sbjct: 240 KQELQHFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQLL 280
Score = 32.3 bits (72), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 73/277 (26%), Positives = 116/277 (41%), Gaps = 16/277 (5%)
Query: 246 SIPSIIGNLKSLLQLDLSENQLIGSIPLS-FGNLSRLTLMSLFNNLLS--GSLPPILGNL 302
S+P+ I + S +L+L N+L S+P F L++LT +SL +N LS G
Sbjct: 21 SVPTGIPS--SATRLELESNKL-QSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGT 77
Query: 303 KSLSALGLHINQLSGVIP--SSIGNLSSLRALYLYNNGLCGFVPEEIRY-LKSLSELELC 359
SL L L N GVI S+ L L L ++ L + L++L L++
Sbjct: 78 TSLKYLDLSFN---GVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDIS 134
Query: 360 KNHLSGVIPHSIGNLTGLLLLNMCENHLSGP-IPKSFKNLTSVERVLLNQNNLSGKVYEA 418
H L+ L +L M N +P F L ++ + L+Q L A
Sbjct: 135 HTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTA 194
Query: 419 FGDHPNLTFLNLSQNNFCGEISFNWRNFPKLGTFIVSVNNISGSIPPEIGDSP-KLQVLD 477
F +L LN+S NNF +F ++ L S+N+I S E+ P L L+
Sbjct: 195 FNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLN 254
Query: 478 LSSNSIVGEIPVQ--LGKLFSLNKLILNLNQLSGGMP 512
L+ N Q L + +L++ + ++ P
Sbjct: 255 LTQNDFACTCEHQSFLQWIKDQRQLLVEVERMECATP 291
Score = 30.0 bits (66), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 27/96 (28%), Positives = 48/96 (50%), Gaps = 5/96 (5%)
Query: 518 LTELQYLDLSANKLKSS-IPKSIGNLLRLRYLDLSNNQFGHKIPIELEKLIHLSELDLSY 576
L+ L+ L ++ N + + +P L L +LDLS Q P L L L++S+
Sbjct: 149 LSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSH 208
Query: 577 N--FLGEEIPFQICNVKSLEKLNLCHNNLLGSFQQK 610
N F + P++ N SL+ L+ N+++ S +Q+
Sbjct: 209 NNFFSLDTFPYKCLN--SLQVLDYSLNHIMTSKKQE 242
>pdb|3RFS|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
pdb|3RFS|B Chain B, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 272
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 41/114 (35%), Positives = 58/114 (50%), Gaps = 2/114 (1%)
Query: 491 LGKLFSLNKLILNLNQLSGGMPLELGSLTELQYLDLSANKLKSSIPKSIGNLLRLRYLDL 550
L +L +L LIL NQL LT L+ L L N+L+S L L YL+L
Sbjct: 81 LKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNL 140
Query: 551 SNNQFGHKIPIELEKLIHLSELDLSYNFLGEEIPFQICN-VKSLEKLNLCHNNL 603
++NQ +KL +L+ELDLSYN L + +P + + + L+ L L N L
Sbjct: 141 AHNQLQSLPKGVFDKLTNLTELDLSYNQL-QSLPEGVFDKLTQLKDLRLYQNQL 193
Score = 37.7 bits (86), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 54/190 (28%), Positives = 74/190 (38%), Gaps = 26/190 (13%)
Query: 347 IRYLKSLSELELCKNHLSGVIPHSIGNLTGLLLLNMCENHLSGPIPKSFKNLTSVERVLL 406
I+YL ++ L L N L + ++ LT L L + N L F LT+++ ++L
Sbjct: 59 IQYLPNVRYLALGGNKLHDI--SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVL 116
Query: 407 NQNNLSGKVYEAFGDHPNLTFLNLSQNNFCGEISFNWRNFPKLGTFIVSVNNISGSIPPE 466
+N L F NLT+LNL+ N ++ PK G F N
Sbjct: 117 VENQLQSLPDGVFDKLTNLTYLNLAHNQL--------QSLPK-GVFDKLTN--------- 158
Query: 467 IGDSPKLQVLDLSSNSIVGEIPVQLGKLFSLNKLILNLNQLSGGMPLELGSLTELQYLDL 526
L LDLS N + KL L L L NQL LT LQY+ L
Sbjct: 159 ------LTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWL 212
Query: 527 SANKLKSSIP 536
N + P
Sbjct: 213 HDNPWDCTCP 222
Score = 37.0 bits (84), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 38/120 (31%), Positives = 52/120 (43%), Gaps = 2/120 (1%)
Query: 250 IIGNLKSLLQLDLSENQLIGSIPLSFGNLSRLTLMSLFNNLLSGSLPP-ILGNLKSLSAL 308
+ L +L +L L ENQL F L+ LT ++L +N L SLP + L +L+ L
Sbjct: 104 VFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQ-SLPKGVFDKLTNLTEL 162
Query: 309 GLHINQLSGVIPSSIGNLSSLRALYLYNNGLCGFVPEEIRYLKSLSELELCKNHLSGVIP 368
L NQL + L+ L+ L LY N L L SL + L N P
Sbjct: 163 DLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCP 222
Score = 33.5 bits (75), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 54/216 (25%), Positives = 86/216 (39%), Gaps = 47/216 (21%)
Query: 131 IGHLNQLRILYFDVNQLHGSIPPEIGQLSLINVLALCHNNLYGSIPSSL-GNLSNLANFY 189
I +L +R L N+LH + +L+ + L L N L S+P+ + L+NL
Sbjct: 59 IQYLPNVRYLALGGNKLHDI--SALKELTNLTYLILTGNQLQ-SLPNGVFDKLTNLKELV 115
Query: 190 FNNNSLFDSIPLVLGNLNSLSTMDLSQNQFXXXXXXXXXXXXXXXXXXXXXXXFSGSIPS 249
N L V L +L+ ++L+ NQ S+P
Sbjct: 116 LVENQLQSLPDGVFDKLTNLTYLNLAHNQLQ-------------------------SLPK 150
Query: 250 -IIGNLKSLLQLDLSENQLIGSIPLSFGNLSRLTLMSLFNNLLSGSLPPILGNLKSLSAL 308
+ L +L +LDLS NQL F L++L + L+ N L + L SL +
Sbjct: 151 GVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYI 210
Query: 309 GLH-----------------INQLSGVIPSSIGNLS 327
LH IN+ SGV+ +S G+++
Sbjct: 211 WLHDNPWDCTCPGIRYLSEWINKHSGVVRNSAGSVA 246
Score = 29.6 bits (65), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 36/115 (31%), Positives = 49/115 (42%), Gaps = 4/115 (3%)
Query: 107 IGNLSKLQYLDLGSNQLSGVIPPEIGHLNQLRILYFDVNQLHGSIPPEI-GQLSLINVLA 165
+ L+ L YL L NQL + L L+ L NQL S+P + +L+ + L
Sbjct: 81 LKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQ-SLPDGVFDKLTNLTYLN 139
Query: 166 LCHNNLYGSIPSSLGNLSNLANFYFNNNSLFDSIPL-VLGNLNSLSTMDLSQNQF 219
L HN L L+NL + N L S+P V L L + L QNQ
Sbjct: 140 LAHNQLQSLPKGVFDKLTNLTELDLSYNQL-QSLPEGVFDKLTQLKDLRLYQNQL 193
>pdb|3VQ1|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX
pdb|3VQ1|B Chain B, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX
pdb|3VQ2|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LPS COMPLEX
pdb|3VQ2|B Chain B, Crystal Structure Of Mouse Tlr4MD-2LPS COMPLEX
Length = 606
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 132/527 (25%), Positives = 198/527 (37%), Gaps = 67/527 (12%)
Query: 92 LNLSFNIFFGIIPPQIGNLSKLQYLDLGSNQLSGVIPPEIGHLNQLRILYFDVNQLHGSI 151
++LSFN + N S+LQ+LDL ++ + L+ L L N +
Sbjct: 37 IDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFS 96
Query: 152 PPEIGQLSLINVLALCHNNLYGSIPSSLGNLSNLANFYFNNNSLFD-SIPLVLGNLNSLS 210
P L+ + L L +G L L +N + +P NL +L
Sbjct: 97 PGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLV 156
Query: 211 TMDLSQNQFXXXXXXXXXXXXXXXXXXXXXXXFSGSIPSIIGNLK-SLLQLDLSENQLIG 269
+DLS N F P + +L SL +D ++Q
Sbjct: 157 HVDLSYNYIQTITVNDLQ--------------FLRENPQVNLSLDMSLNPIDFIQDQAFQ 202
Query: 270 SIPLSFGNLSRLTLMSLFNNLLSGSLPPILGNLKSLSALGLHINQLSGVIPSSIGNLSSL 329
I L LTL FN+ S + L NL GLH+++L +G
Sbjct: 203 GIKLH-----ELTLRGNFNS--SNIMKTCLQNLA-----GLHVHRLI------LGEFKDE 244
Query: 330 RALYLYN----NGLCGFVPEEIR--YLKSLSELELCKNHLSGVIPHSIGNLTGLLLLNMC 383
R L ++ GLC +E R Y S+ V H + N++ + L +
Sbjct: 245 RNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSD--------DIVKFHCLANVSAMSLAGVS 296
Query: 384 ENHLSGPIPKSFKNLT-SVERVLLNQNNLSGKVYEAFGDHPNLTFLNLSQNNFCGEISFN 442
+L +PK FK + S+ R L Q + D P L L L+ N G ISF
Sbjct: 297 IKYLED-VPKHFKWQSLSIIRCQLKQ-------FPTL-DLPFLKSLTLTMNK--GSISFK 345
Query: 443 WRNFPKLGTFIVSVNNISGSIPPEIGD--SPKLQVLDLSSNSIVGEIPVQLGKLFSLNKL 500
P L +S N +S S D + L+ LDLS N + + L L L
Sbjct: 346 KVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAII-MSANFMGLEELQHL 404
Query: 501 ILNLNQLSGGMPL-ELGSLTELQYLDLSANKLKSSIPKSIGNLLRLRYLDLSNNQF-GHK 558
+ L SL +L YLD+S K L L L ++ N F +
Sbjct: 405 DFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNT 464
Query: 559 IPIELEKLIHLSELDLSYNFLGEEIPFQICN-VKSLEKLNLCHNNLL 604
+ +L+ LDLS L E+I + + + + L+ LN+ HNNLL
Sbjct: 465 LSNVFANTTNLTFLDLSKCQL-EQISWGVFDTLHRLQLLNMSHNNLL 510
Score = 31.6 bits (70), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 39/143 (27%), Positives = 60/143 (41%), Gaps = 8/143 (5%)
Query: 461 GSIPPEIGDSPKL--QVLDLSSNSIVGEIPVQLGKLFSLNKLILNLNQLSGGMPLELGSL 518
GS+ P I P + Q +D + + +IP S + L+ N L +
Sbjct: 2 GSLNPCIEVVPNITYQCMDQKLSKVPDDIPS------STKNIDLSFNPLKILKSYSFSNF 55
Query: 519 TELQYLDLSANKLKSSIPKSIGNLLRLRYLDLSNNQFGHKIPIELEKLIHLSELDLSYNF 578
+ELQ+LDLS ++++ K+ L L L L+ N P L L L
Sbjct: 56 SELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETK 115
Query: 579 LGEEIPFQICNVKSLEKLNLCHN 601
L F I + +L+KLN+ HN
Sbjct: 116 LASLESFPIGQLITLKKLNVAHN 138
>pdb|2Z64|A Chain A, Crystal Structure Of Mouse Tlr4 And Mouse Md-2 Complex
Length = 599
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 132/527 (25%), Positives = 198/527 (37%), Gaps = 67/527 (12%)
Query: 92 LNLSFNIFFGIIPPQIGNLSKLQYLDLGSNQLSGVIPPEIGHLNQLRILYFDVNQLHGSI 151
++LSFN + N S+LQ+LDL ++ + L+ L L N +
Sbjct: 32 IDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFS 91
Query: 152 PPEIGQLSLINVLALCHNNLYGSIPSSLGNLSNLANFYFNNNSLFD-SIPLVLGNLNSLS 210
P L+ + L L +G L L +N + +P NL +L
Sbjct: 92 PGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLV 151
Query: 211 TMDLSQNQFXXXXXXXXXXXXXXXXXXXXXXXFSGSIPSIIGNLK-SLLQLDLSENQLIG 269
+DLS N F P + +L SL +D ++Q
Sbjct: 152 HVDLSYNYIQTITVNDLQ--------------FLRENPQVNLSLDMSLNPIDFIQDQAFQ 197
Query: 270 SIPLSFGNLSRLTLMSLFNNLLSGSLPPILGNLKSLSALGLHINQLSGVIPSSIGNLSSL 329
I L LTL FN+ S + L NL GLH+++L +G
Sbjct: 198 GIKLH-----ELTLRGNFNS--SNIMKTCLQNLA-----GLHVHRLI------LGEFKDE 239
Query: 330 RALYLYN----NGLCGFVPEEIR--YLKSLSELELCKNHLSGVIPHSIGNLTGLLLLNMC 383
R L ++ GLC +E R Y S+ V H + N++ + L +
Sbjct: 240 RNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSD--------DIVKFHCLANVSAMSLAGVS 291
Query: 384 ENHLSGPIPKSFKNLT-SVERVLLNQNNLSGKVYEAFGDHPNLTFLNLSQNNFCGEISFN 442
+L +PK FK + S+ R L Q + D P L L L+ N G ISF
Sbjct: 292 IKYLED-VPKHFKWQSLSIIRCQLKQ-------FPTL-DLPFLKSLTLTMNK--GSISFK 340
Query: 443 WRNFPKLGTFIVSVNNISGSIPPEIGD--SPKLQVLDLSSNSIVGEIPVQLGKLFSLNKL 500
P L +S N +S S D + L+ LDLS N + + L L L
Sbjct: 341 KVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAII-MSANFMGLEELQHL 399
Query: 501 ILNLNQLSGGMPLE-LGSLTELQYLDLSANKLKSSIPKSIGNLLRLRYLDLSNNQF-GHK 558
+ L SL +L YLD+S K L L L ++ N F +
Sbjct: 400 DFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNT 459
Query: 559 IPIELEKLIHLSELDLSYNFLGEEIPFQICN-VKSLEKLNLCHNNLL 604
+ +L+ LDLS L E+I + + + + L+ LN+ HNNLL
Sbjct: 460 LSNVFANTTNLTFLDLSKCQL-EQISWGVFDTLHRLQLLNMSHNNLL 505
Score = 28.9 bits (63), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 35/136 (25%), Positives = 56/136 (41%), Gaps = 6/136 (4%)
Query: 466 EIGDSPKLQVLDLSSNSIVGEIPVQLGKLFSLNKLILNLNQLSGGMPLELGSLTELQYLD 525
E+ + Q +D + + +IP S + L+ N L + +ELQ+LD
Sbjct: 4 EVVPNITYQCMDQKLSKVPDDIPS------STKNIDLSFNPLKILKSYSFSNFSELQWLD 57
Query: 526 LSANKLKSSIPKSIGNLLRLRYLDLSNNQFGHKIPIELEKLIHLSELDLSYNFLGEEIPF 585
LS ++++ K+ L L L L+ N P L L L L F
Sbjct: 58 LSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESF 117
Query: 586 QICNVKSLEKLNLCHN 601
I + +L+KLN+ HN
Sbjct: 118 PIGQLITLKKLNVAHN 133
>pdb|2Z63|A Chain A, Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 570
Score = 39.3 bits (90), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 46/169 (27%), Positives = 76/169 (44%), Gaps = 3/169 (1%)
Query: 243 FSGSIPSIIGNLKSLLQLDLSENQLIGSIPLSFGNLSRLTLMSL-FNNLLSGSLPPILGN 301
F G SL LDLS N +I ++ +F L +L + +NL S + +
Sbjct: 361 FKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLS 419
Query: 302 LKSLSALGLHINQLSGVIPSSIGNLSSLRALYLYNNGLC-GFVPEEIRYLKSLSELELCK 360
L++L L + LSSL L + N F+P+ L++L+ L+L +
Sbjct: 420 LRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQ 479
Query: 361 NHLSGVIPHSIGNLTGLLLLNMCENHLSGPIPKSFKNLTSVERVLLNQN 409
L + P + +L+ L +LNM N L F LTS++++ L+ N
Sbjct: 480 CQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTN 528
Score = 37.7 bits (86), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 37/74 (50%)
Query: 247 IPSIIGNLKSLLQLDLSENQLIGSIPLSFGNLSRLTLMSLFNNLLSGSLPPILGNLKSLS 306
+P I L++L LDLS+ QL P +F +LS L ++++ +N L I L SL
Sbjct: 462 LPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQ 521
Query: 307 ALGLHINQLSGVIP 320
+ LH N P
Sbjct: 522 KIWLHTNPWDCSCP 535
Score = 33.9 bits (76), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 60/217 (27%), Positives = 91/217 (41%), Gaps = 14/217 (6%)
Query: 399 TSVERVLLNQNNLSGKVYE----AFGDHPNLTFLNLSQNNFC---GEISFNWRNFPKLGT 451
++ERV N + E FG P L +L + F G +F+ + P L
Sbjct: 292 VTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEF 351
Query: 452 FIVSVNNIS--GSIPPEIGDSPKLQVLDLSSNSIVGEIPVQLG--KLFSLNKLILNLNQL 507
+S N +S G + L+ LDLS N ++ LG +L L+ NL Q+
Sbjct: 352 LDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQM 411
Query: 508 SGGMPLELGSLTELQYLDLSANKLKSSIPKSIGNLLRLRYLDLSNNQFGHK-IPIELEKL 566
S SL L YLD+S + + L L L ++ N F +P +L
Sbjct: 412 SEFSVFL--SLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTEL 469
Query: 567 IHLSELDLSYNFLGEEIPFQICNVKSLEKLNLCHNNL 603
+L+ LDLS L + P ++ SL+ LN+ N L
Sbjct: 470 RNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQL 506
Score = 33.1 bits (74), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 44/87 (50%), Gaps = 7/87 (8%)
Query: 52 AWLGISCNQAGRVISINLSSMALNGTLQEFAFSSFPHLVQLNLSFNIFFGI-IPPQIGNL 110
A+ G+S Q + NL+S L+ F L +LN++ N+ +P NL
Sbjct: 95 AFSGLSSLQKLVAVETNLAS------LENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNL 148
Query: 111 SKLQYLDLGSNQLSGVIPPEIGHLNQL 137
+ L++LDL SN++ + ++ L+Q+
Sbjct: 149 TNLEHLDLSSNKIQSIYCTDLRVLHQM 175
Score = 29.3 bits (64), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 54/196 (27%), Positives = 79/196 (40%), Gaps = 13/196 (6%)
Query: 350 LKSLSELELCKNHLS--GVIPHSIGNLTGLLLLNMCENHLSGPIPKS--FKNLTSVERVL 405
L SL L+L +N LS G S T L L++ N G I S F L +E +
Sbjct: 346 LPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFN---GVITMSSNFLGLEQLEHLD 402
Query: 406 LNQNNLSG-KVYEAFGDHPNLTFLNLSQNNFCGEISFN--WRNFPKLGTFIVSVNNISGS 462
+NL + F NL +L++S + ++FN + L ++ N+ +
Sbjct: 403 FQHSNLKQMSEFSVFLSLRNLIYLDISHTH--TRVAFNGIFNGLSSLEVLKMAGNSFQEN 460
Query: 463 IPPEIGDSPK-LQVLDLSSNSIVGEIPVQLGKLFSLNKLILNLNQLSGGMPLELGSLTEL 521
P+I + L LDLS + P L SL L + NQL LT L
Sbjct: 461 FLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSL 520
Query: 522 QYLDLSANKLKSSIPK 537
Q + L N S P+
Sbjct: 521 QKIWLHTNPWDCSCPR 536
>pdb|3RFJ|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 279
Score = 39.3 bits (90), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 41/134 (30%), Positives = 59/134 (44%), Gaps = 2/134 (1%)
Query: 274 SFGNLSRLTLMSLFNNLLSGSLP-PILGNLKSLSALGLHINQLSGVIPSSIGNLSSLRAL 332
+ L+ LT + L N L SLP + L +L L L NQL + L++L L
Sbjct: 80 ALKELTNLTYLILTGNQLQ-SLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYL 138
Query: 333 YLYNNGLCGFVPEEIRYLKSLSELELCKNHLSGVIPHSIGNLTGLLLLNMCENHLSGPIP 392
YLY+N L L +L+ L+L N L + LT L L++ +N L
Sbjct: 139 YLYHNQLQSLPKGVFDKLTNLTRLDLDNNQLQSLPEGVFDKLTQLKQLSLNDNQLKSVPD 198
Query: 393 KSFKNLTSVERVLL 406
F LTS+ + L
Sbjct: 199 GVFDRLTSLTHIWL 212
Score = 35.4 bits (80), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 34/90 (37%), Positives = 44/90 (48%), Gaps = 2/90 (2%)
Query: 491 LGKLFSLNKLILNLNQLSGGMPLELGSLTELQYLDLSANKLKSSIPKSI-GNLLRLRYLD 549
KL +L +L+L NQL LT L YL L N+L+S +PK + L L LD
Sbjct: 105 FDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLYLYHNQLQS-LPKGVFDKLTNLTRLD 163
Query: 550 LSNNQFGHKIPIELEKLIHLSELDLSYNFL 579
L NNQ +KL L +L L+ N L
Sbjct: 164 LDNNQLQSLPEGVFDKLTQLKQLSLNDNQL 193
Score = 34.3 bits (77), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 36/95 (37%), Positives = 47/95 (49%), Gaps = 5/95 (5%)
Query: 246 SIPS-IIGNLKSLLQLDLSENQLIGSIPLS-FGNLSRLTLMSLFNNLLSGSLPP-ILGNL 302
S+P + L +L L L NQL S+P F L+ LT + L NN L SLP + L
Sbjct: 123 SLPDGVFDKLTNLTYLYLYHNQL-QSLPKGVFDKLTNLTRLDLDNNQLQ-SLPEGVFDKL 180
Query: 303 KSLSALGLHINQLSGVIPSSIGNLSSLRALYLYNN 337
L L L+ NQL V L+SL ++L NN
Sbjct: 181 TQLKQLSLNDNQLKSVPDGVFDRLTSLTHIWLLNN 215
Score = 31.2 bits (69), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 36/115 (31%), Positives = 50/115 (43%), Gaps = 4/115 (3%)
Query: 107 IGNLSKLQYLDLGSNQLSGVIPPEIGHLNQLRILYFDVNQLHGSIPPEI-GQLSLINVLA 165
+ L+ L YL L NQL + L L+ L NQL S+P + +L+ + L
Sbjct: 81 LKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQ-SLPDGVFDKLTNLTYLY 139
Query: 166 LCHNNLYGSIPSSLGNLSNLANFYFNNNSLFDSIPL-VLGNLNSLSTMDLSQNQF 219
L HN L L+NL +NN L S+P V L L + L+ NQ
Sbjct: 140 LYHNQLQSLPKGVFDKLTNLTRLDLDNNQL-QSLPEGVFDKLTQLKQLSLNDNQL 193
>pdb|3G39|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor
Length = 170
Score = 39.3 bits (90), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 30/93 (32%), Positives = 46/93 (49%), Gaps = 2/93 (2%)
Query: 245 GSIPSIIGNLKSLLQLDLSENQLIGSIPLSFGNLSRLTLMSLFNNLLSGSLPPILGNLKS 304
S+P+ I +L L +NQ+ P F L++LT + L NN L+ + L
Sbjct: 22 ASVPTGIPTTTQVLYL--YDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQ 79
Query: 305 LSALGLHINQLSGVIPSSIGNLSSLRALYLYNN 337
L+ L L+ NQL + + NL SL ++L NN
Sbjct: 80 LTQLSLNDNQLKSIPRGAFDNLKSLTHIWLLNN 112
Score = 35.0 bits (79), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 34/117 (29%), Positives = 54/117 (46%), Gaps = 12/117 (10%)
Query: 319 IPSSIGNLSSLRALYLYNNGLCGFVPEEIRYLKSLSELELCKNHLSGVIPHSI-GNLTGL 377
+P+ I ++ + LYLY+N + P L L+ L+L N L+ V+P + LT L
Sbjct: 24 VPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLT-VLPAGVFDKLTQL 80
Query: 378 LLLNMCENHLSGPIPK-SFKNLTSVERVLLNQNNLSGKVYEAF------GDHPNLTF 427
L++ +N L IP+ +F NL S+ + L N + HP L F
Sbjct: 81 TQLSLNDNQLKS-IPRGAFDNLKSLTHIWLLNNPWDCACSDILYLSRWISQHPGLVF 136
Score = 32.7 bits (73), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 36/107 (33%), Positives = 51/107 (47%), Gaps = 4/107 (3%)
Query: 450 GTFIVSVNNISGSIPPEIGDSPKLQVLDLSSNSIVGEIPVQLGKLFSLNKLILNLNQLSG 509
GT + S+P I + QVL L N I P +L L +L L+ NQL+
Sbjct: 11 GTTVDCSGKSLASVPTGIPTT--TQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTV 68
Query: 510 GMPLELGSLTELQYLDLSANKLKSSIPK-SIGNLLRLRYLDLSNNQF 555
LT+L L L+ N+LK SIP+ + NL L ++ L NN +
Sbjct: 69 LPAGVFDKLTQLTQLSLNDNQLK-SIPRGAFDNLKSLTHIWLLNNPW 114
Score = 28.9 bits (63), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 38/86 (44%)
Query: 516 GSLTELQYLDLSANKLKSSIPKSIGNLLRLRYLDLSNNQFGHKIPIELEKLIHLSELDLS 575
G T Q L L N++ P L +L LDL NNQ +KL L++L L+
Sbjct: 27 GIPTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLN 86
Query: 576 YNFLGEEIPFQICNVKSLEKLNLCHN 601
N L N+KSL + L +N
Sbjct: 87 DNQLKSIPRGAFDNLKSLTHIWLLNN 112
>pdb|1ZIW|A Chain A, Human Toll-Like Receptor 3 Extracellular Domain Structure
Length = 680
Score = 38.9 bits (89), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 130/500 (26%), Positives = 196/500 (39%), Gaps = 35/500 (7%)
Query: 111 SKLQYLDLGSNQLSGVIPPEIGHLNQLRILYFDVNQLHGSIPPEIGQ-LSLINVLALCHN 169
+ + L+L NQL + +QL L N + + PE+ Q L ++ VL L HN
Sbjct: 25 TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTI-SKLEPELCQKLPMLKVLNLQHN 83
Query: 170 NLYGSIPSSLGNLSNLANFYFNNNSL--FDSIPLVLGNLNSLSTMDLSQNQFXXX---XX 224
L + +NL + +NS+ + P V +L T+DLS N
Sbjct: 84 ELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFV--KQKNLITLDLSHNGLSSTKLGTQ 141
Query: 225 XXXXXXXXXXXXXXXXXXFSGSIPSIIGNLKSLLQLDLSENQLIGSIPLSFGNLSRLTLM 284
I N SL +L+LS NQ+ P F + RL +
Sbjct: 142 VQLENLQELLLSNNKIQALKSEELDIFAN-SSLKKLELSSNQIKEFSPGCFHAIGRLFGL 200
Query: 285 SLFNNLLSGSLPPIL----GNLKSLSALGLHINQLSGVIPSSIGNL--SSLRALYLYNNG 338
L N L SL L N S+ L L +QLS ++ L ++L L L N
Sbjct: 201 FLNNVQLGPSLTEKLCLELAN-TSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNN 259
Query: 339 LCGFVPEEIRYLKSLSELELCKNHLSGVIPHSIGNLTGLLLLNMCENHLSGPI-----PK 393
L + +L L L N++ + HS+ L + LN+ + I PK
Sbjct: 260 LNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPK 319
Query: 394 ----SFKNLTSVERVLLNQNNLSGKVYEAFGDHPNLTFLNLSQNNFCGEISFNWRNFPKL 449
SF+ L +E + + N++ G F NL +L+LS N+F + F L
Sbjct: 320 IDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLS-NSFTSLRTLTNETFVSL 378
Query: 450 GTFIVSVNNISGSIPPEIGDSP-----KLQVLDLSSNSIVGEIPVQLGK-LFSLNKLILN 503
+ + N++ + +I L+VLDL N I E+ Q + L ++ ++ L+
Sbjct: 379 AHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLS 438
Query: 504 LNQLSGGMPLELGSLTELQYLDLSANKLK--SSIPKSIGNLLRLRYLDLSNNQFGHKIPI 561
N+ + LQ L L LK S P L L LDLSNN +
Sbjct: 439 YNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDD 498
Query: 562 ELEKLIHLSELDLSYNFLGE 581
LE L L LDL +N L
Sbjct: 499 MLEGLEKLEILDLQHNNLAR 518
Score = 36.6 bits (83), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 90/345 (26%), Positives = 129/345 (37%), Gaps = 64/345 (18%)
Query: 310 LHINQLSGVIPSSIGNLSSLRALYLYNNGLCGFVPEEIRYLKSLSELELCKNHLSGVIPH 369
L + Q+ +P++I L L +N L L+ L++ N +S + P
Sbjct: 14 LKLTQVPDDLPTNIT------VLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPE 67
Query: 370 SIGNLTGLLLLNMCENHLSGPIPKSFKNLTSVERVLLNQNNLSGKVYEAFGDHPNLTFLN 429
L L +LN+ N LS K+F T++ + L N++ F NL L+
Sbjct: 68 LCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLD 127
Query: 430 LSQNNFCGEISFNWRNFPKLGTFI---------VSVNNISG--SIPPEIGDSPKLQVLDL 478
LS N KLGT + +S N I S +I + L+ L+L
Sbjct: 128 LSHNGLSS---------TKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLEL 178
Query: 479 SSNSIVGEIP---VQLGKLFSL------------NKLILNL------------NQLSGGM 511
SSN I P +G+LF L KL L L +QLS
Sbjct: 179 SSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTS 238
Query: 512 PLELGSL--TELQYLDLSANKLKSSIPKSIGNLLRLRYLDLSNNQFGHKIPIELEKLIHL 569
L T L LDLS N L S L +L Y L N H L L ++
Sbjct: 239 NTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNV 298
Query: 570 SELDLSYNFLGEEI---------PFQICNVKSLEKLNLCHNNLLG 605
L+L +F + I F +K LE LN+ N++ G
Sbjct: 299 RYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPG 343
Score = 30.4 bits (67), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 144/575 (25%), Positives = 227/575 (39%), Gaps = 64/575 (11%)
Query: 83 FSSFPHLVQLNLSFNIFFGIIPPQIGNLSKLQYLDLGSNQLSGVIPPEIGHLNQLRILYF 142
F+ + L L++ FN + P L L+ L+L N+LS + L L+
Sbjct: 45 FTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHL 104
Query: 143 DVNQLHG-SIPPEIGQLSLINVLALCHNNLYGSIPSSLGNLSNLANFYFNNNSL--FDSI 199
N + P + Q +LI L L HN L + + L NL +NN + S
Sbjct: 105 MSNSIQKIKNNPFVKQKNLI-TLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSE 163
Query: 200 PLVLGNLNSLSTMDLSQNQFXXXXXXXXXXXXXXXXXXXXXXXFSGSIPSIIGNL----- 254
L + +SL ++LS NQ PS+ L
Sbjct: 164 ELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLG---PSLTEKLCLELA 220
Query: 255 -KSLLQLDLSENQLIGSIPLSFGNL--SRLTLMSL-FNNLLSGSLPPILGN-----LKSL 305
S+ L LS +QL + +F L + LT++ L +NNL ++GN L L
Sbjct: 221 NTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNL------NVVGNDSFAWLPQL 274
Query: 306 SALGLHINQLSGVIPSSIGNLSSLRALYLYNNGLCGFVPEEI-------------RYLKS 352
L N + + S+ L ++R L L F + I ++LK
Sbjct: 275 EYFFLEYNNIQHLFSHSLHGLFNVRYLNLKR----SFTKQSISLASLPKIDDFSFQWLKC 330
Query: 353 LSELELCKNHLSGVIPHSIGNLTGLLLLNMCENH--LSGPIPKSFKNLTSVERVLLN--Q 408
L L + N + G+ + L L L++ + L ++F +L +LN +
Sbjct: 331 LEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTK 390
Query: 409 NNLSGKVYEAFGDHPNLTFLNLSQNNFCGEIS-FNWRNFPKLGTFIVSVNNISGSIPPEI 467
N +S +AF +L L+L N E++ WR + +S N
Sbjct: 391 NKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSF 450
Query: 468 GDSPKLQVLDLSSNSI--VGEIPVQLGKLFSLNKLILNLNQLSGGMPLELGSLTELQYLD 525
P LQ L L ++ V P L +L L L+ N ++ L L +L+ LD
Sbjct: 451 ALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILD 510
Query: 526 LSANKL----KSSIPKS----IGNLLRLRYLDLSNNQFGHKIPIELEK-LIHLSELDLSY 576
L N L K + P + L L L+L +N F +IP+E+ K L L +DL
Sbjct: 511 LQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFD-EIPVEVFKDLFELKIIDLGL 569
Query: 577 NFLGEEIPFQICNVK-SLEKLNLCHNNLLGSFQQK 610
N L +P + N + SL+ LNL NL+ S ++K
Sbjct: 570 NNLN-TLPASVFNNQVSLKSLNL-QKNLITSVEKK 602
>pdb|3V47|A Chain A, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
pdb|3V47|B Chain B, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
Length = 455
Score = 38.9 bits (89), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 35/74 (47%), Gaps = 1/74 (1%)
Query: 82 AFSSFPHLVQLNLSFNIFFGIIPPQIGNLSKLQYLDLGSNQLSGVIPPEIGHLNQLRILY 141
AF HL++LNLS N I NL KL+ LDL N + + L L+ L
Sbjct: 318 AFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELA 377
Query: 142 FDVNQLHGSIPPEI 155
D NQL S+P I
Sbjct: 378 LDTNQLK-SVPDGI 390
Score = 36.6 bits (83), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 27/107 (25%), Positives = 51/107 (47%)
Query: 327 SSLRALYLYNNGLCGFVPEEIRYLKSLSELELCKNHLSGVIPHSIGNLTGLLLLNMCENH 386
S ++ L + + + + L +L L +N ++ + ++ LT LL LN+ +N
Sbjct: 275 SGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNF 334
Query: 387 LSGPIPKSFKNLTSVERVLLNQNNLSGKVYEAFGDHPNLTFLNLSQN 433
L + F+NL +E + L+ N++ ++F PNL L L N
Sbjct: 335 LGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTN 381
Score = 32.3 bits (72), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 29/115 (25%), Positives = 47/115 (40%)
Query: 295 LPPILGNLKSLSALGLHINQLSGVIPSSIGNLSSLRALYLYNNGLCGFVPEEIRYLKSLS 354
L + + L L L N+++ + ++ L+ L L L N L L L
Sbjct: 291 LKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLE 350
Query: 355 ELELCKNHLSGVIPHSIGNLTGLLLLNMCENHLSGPIPKSFKNLTSVERVLLNQN 409
L+L NH+ + S L L L + N L F LTS++++ L+ N
Sbjct: 351 VLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 405
Score = 29.6 bits (65), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 29/115 (25%), Positives = 48/115 (41%), Gaps = 5/115 (4%)
Query: 302 LKSLSALGLHINQLS-----GVIPSSIGNLSSLRALYLYNNGLCGFVPEEIRYLKSLSEL 356
K L A G+ LS ++ S + + L L L N + L L +L
Sbjct: 269 FKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKL 328
Query: 357 ELCKNHLSGVIPHSIGNLTGLLLLNMCENHLSGPIPKSFKNLTSVERVLLNQNNL 411
L +N L + NL L +L++ NH+ +SF L +++ + L+ N L
Sbjct: 329 NLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQL 383
Score = 28.9 bits (63), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 37/79 (46%), Gaps = 3/79 (3%)
Query: 518 LTELQYLDLSANKLKSSIPKSIGNLLRLRYLDLSNNQFGHKIPIELEKLIHLSELDLSYN 577
T+L+ L L+ N++ + L L L+LS N G E L L LDLSYN
Sbjct: 298 FTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYN 357
Query: 578 F---LGEEIPFQICNVKSL 593
LG++ + N+K L
Sbjct: 358 HIRALGDQSFLGLPNLKEL 376
>pdb|3G3A|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|C Chain C, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|E Chain E, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|G Chain G, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
Length = 178
Score = 38.9 bits (89), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 30/93 (32%), Positives = 46/93 (49%), Gaps = 2/93 (2%)
Query: 245 GSIPSIIGNLKSLLQLDLSENQLIGSIPLSFGNLSRLTLMSLFNNLLSGSLPPILGNLKS 304
S+P+ I +L L +NQ+ P F L++LT + L NN L+ + L
Sbjct: 30 ASVPTGIPTTTQVLYL--YDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQ 87
Query: 305 LSALGLHINQLSGVIPSSIGNLSSLRALYLYNN 337
L+ L L+ NQL + + NL SL ++L NN
Sbjct: 88 LTQLSLNDNQLKSIPRGAFDNLKSLTHIWLLNN 120
Score = 34.7 bits (78), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 34/117 (29%), Positives = 54/117 (46%), Gaps = 12/117 (10%)
Query: 319 IPSSIGNLSSLRALYLYNNGLCGFVPEEIRYLKSLSELELCKNHLSGVIPHSI-GNLTGL 377
+P+ I ++ + LYLY+N + P L L+ L+L N L+ V+P + LT L
Sbjct: 32 VPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLT-VLPAGVFDKLTQL 88
Query: 378 LLLNMCENHLSGPIPK-SFKNLTSVERVLLNQNNLSGKVYEAF------GDHPNLTF 427
L++ +N L IP+ +F NL S+ + L N + HP L F
Sbjct: 89 TQLSLNDNQLKS-IPRGAFDNLKSLTHIWLLNNPWDCACSDILYLSRWISQHPGLVF 144
Score = 32.3 bits (72), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 36/107 (33%), Positives = 51/107 (47%), Gaps = 4/107 (3%)
Query: 450 GTFIVSVNNISGSIPPEIGDSPKLQVLDLSSNSIVGEIPVQLGKLFSLNKLILNLNQLSG 509
GT + S+P I + QVL L N I P +L L +L L+ NQL+
Sbjct: 19 GTTVDCSGKSLASVPTGIPTT--TQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTV 76
Query: 510 GMPLELGSLTELQYLDLSANKLKSSIPK-SIGNLLRLRYLDLSNNQF 555
LT+L L L+ N+LK SIP+ + NL L ++ L NN +
Sbjct: 77 LPAGVFDKLTQLTQLSLNDNQLK-SIPRGAFDNLKSLTHIWLLNNPW 122
>pdb|2A0Z|A Chain A, The Molecular Structure Of Toll-like Receptor 3 Ligand
Binding Domain
Length = 705
Score = 38.5 bits (88), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 130/500 (26%), Positives = 196/500 (39%), Gaps = 35/500 (7%)
Query: 111 SKLQYLDLGSNQLSGVIPPEIGHLNQLRILYFDVNQLHGSIPPEIGQ-LSLINVLALCHN 169
+ + L+L NQL + +QL L N + + PE+ Q L ++ VL L HN
Sbjct: 30 TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTI-SKLEPELCQKLPMLKVLNLQHN 88
Query: 170 NLYGSIPSSLGNLSNLANFYFNNNSL--FDSIPLVLGNLNSLSTMDLSQNQFXXX---XX 224
L + +NL + +NS+ + P V +L T+DLS N
Sbjct: 89 ELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFV--KQKNLITLDLSHNGLSSTKLGTQ 146
Query: 225 XXXXXXXXXXXXXXXXXXFSGSIPSIIGNLKSLLQLDLSENQLIGSIPLSFGNLSRLTLM 284
I N SL +L+LS NQ+ P F + RL +
Sbjct: 147 VQLENLQELLLSNNKIQALKSEELDIFAN-SSLKKLELSSNQIKEFSPGCFHAIGRLFGL 205
Query: 285 SLFNNLLSGSLPPIL----GNLKSLSALGLHINQLSGVIPSSIGNL--SSLRALYLYNNG 338
L N L SL L N S+ L L +QLS ++ L ++L L L N
Sbjct: 206 FLNNVQLGPSLTEKLCLELAN-TSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNN 264
Query: 339 LCGFVPEEIRYLKSLSELELCKNHLSGVIPHSIGNLTGLLLLNMCENHLSGPI-----PK 393
L + +L L L N++ + HS+ L + LN+ + I PK
Sbjct: 265 LNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPK 324
Query: 394 ----SFKNLTSVERVLLNQNNLSGKVYEAFGDHPNLTFLNLSQNNFCGEISFNWRNFPKL 449
SF+ L +E + + N++ G F NL +L+LS N+F + F L
Sbjct: 325 IDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLS-NSFTSLRTLTNETFVSL 383
Query: 450 GTFIVSVNNISGSIPPEIGDSP-----KLQVLDLSSNSIVGEIPVQLGK-LFSLNKLILN 503
+ + N++ + +I L+VLDL N I E+ Q + L ++ ++ L+
Sbjct: 384 AHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLS 443
Query: 504 LNQLSGGMPLELGSLTELQYLDLSANKLK--SSIPKSIGNLLRLRYLDLSNNQFGHKIPI 561
N+ + LQ L L LK S P L L LDLSNN +
Sbjct: 444 YNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDD 503
Query: 562 ELEKLIHLSELDLSYNFLGE 581
LE L L LDL +N L
Sbjct: 504 MLEGLEKLEILDLQHNNLAR 523
Score = 36.6 bits (83), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 90/345 (26%), Positives = 129/345 (37%), Gaps = 64/345 (18%)
Query: 310 LHINQLSGVIPSSIGNLSSLRALYLYNNGLCGFVPEEIRYLKSLSELELCKNHLSGVIPH 369
L + Q+ +P++I L L +N L L+ L++ N +S + P
Sbjct: 19 LKLTQVPDDLPTNIT------VLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPE 72
Query: 370 SIGNLTGLLLLNMCENHLSGPIPKSFKNLTSVERVLLNQNNLSGKVYEAFGDHPNLTFLN 429
L L +LN+ N LS K+F T++ + L N++ F NL L+
Sbjct: 73 LCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLD 132
Query: 430 LSQNNFCGEISFNWRNFPKLGTFI---------VSVNNISG--SIPPEIGDSPKLQVLDL 478
LS N KLGT + +S N I S +I + L+ L+L
Sbjct: 133 LSHNGLSS---------TKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLEL 183
Query: 479 SSNSIVGEIP---VQLGKLFSL------------NKLILNL------------NQLSGGM 511
SSN I P +G+LF L KL L L +QLS
Sbjct: 184 SSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTS 243
Query: 512 PLELGSL--TELQYLDLSANKLKSSIPKSIGNLLRLRYLDLSNNQFGHKIPIELEKLIHL 569
L T L LDLS N L S L +L Y L N H L L ++
Sbjct: 244 NTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNV 303
Query: 570 SELDLSYNFLGEEI---------PFQICNVKSLEKLNLCHNNLLG 605
L+L +F + I F +K LE LN+ N++ G
Sbjct: 304 RYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPG 348
Score = 30.0 bits (66), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 144/575 (25%), Positives = 227/575 (39%), Gaps = 64/575 (11%)
Query: 83 FSSFPHLVQLNLSFNIFFGIIPPQIGNLSKLQYLDLGSNQLSGVIPPEIGHLNQLRILYF 142
F+ + L L++ FN + P L L+ L+L N+LS + L L+
Sbjct: 50 FTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHL 109
Query: 143 DVNQLHG-SIPPEIGQLSLINVLALCHNNLYGSIPSSLGNLSNLANFYFNNNSL--FDSI 199
N + P + Q +LI L L HN L + + L NL +NN + S
Sbjct: 110 MSNSIQKIKNNPFVKQKNLI-TLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSE 168
Query: 200 PLVLGNLNSLSTMDLSQNQFXXXXXXXXXXXXXXXXXXXXXXXFSGSIPSIIGNL----- 254
L + +SL ++LS NQ PS+ L
Sbjct: 169 ELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLG---PSLTEKLCLELA 225
Query: 255 -KSLLQLDLSENQLIGSIPLSFGNL--SRLTLMSL-FNNLLSGSLPPILGN-----LKSL 305
S+ L LS +QL + +F L + LT++ L +NNL ++GN L L
Sbjct: 226 NTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNL------NVVGNDSFAWLPQL 279
Query: 306 SALGLHINQLSGVIPSSIGNLSSLRALYLYNNGLCGFVPEEI-------------RYLKS 352
L N + + S+ L ++R L L F + I ++LK
Sbjct: 280 EYFFLEYNNIQHLFSHSLHGLFNVRYLNLKR----SFTKQSISLASLPKIDDFSFQWLKC 335
Query: 353 LSELELCKNHLSGVIPHSIGNLTGLLLLNMCENH--LSGPIPKSFKNLTSVERVLLN--Q 408
L L + N + G+ + L L L++ + L ++F +L +LN +
Sbjct: 336 LEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTK 395
Query: 409 NNLSGKVYEAFGDHPNLTFLNLSQNNFCGEIS-FNWRNFPKLGTFIVSVNNISGSIPPEI 467
N +S +AF +L L+L N E++ WR + +S N
Sbjct: 396 NKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSF 455
Query: 468 GDSPKLQVLDLSSNSI--VGEIPVQLGKLFSLNKLILNLNQLSGGMPLELGSLTELQYLD 525
P LQ L L ++ V P L +L L L+ N ++ L L +L+ LD
Sbjct: 456 ALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILD 515
Query: 526 LSANKL----KSSIPKS----IGNLLRLRYLDLSNNQFGHKIPIELEK-LIHLSELDLSY 576
L N L K + P + L L L+L +N F +IP+E+ K L L +DL
Sbjct: 516 LQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFD-EIPVEVFKDLFELKIIDLGL 574
Query: 577 NFLGEEIPFQICNVK-SLEKLNLCHNNLLGSFQQK 610
N L +P + N + SL+ LNL NL+ S ++K
Sbjct: 575 NNLN-TLPASVFNNQVSLKSLNL-QKNLITSVEKK 607
>pdb|3BZ5|A Chain A, Functional Domain Of Inlj From Listeria Monocytogenes
Includes A Cysteine Ladder
Length = 457
Score = 38.5 bits (88), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 44/146 (30%), Positives = 68/146 (46%), Gaps = 18/146 (12%)
Query: 466 EIGDSPKLQVLDLSSNSIVGEIPVQLGKLFSLNKLILNLNQLSGGMPLELGSLTELQYLD 525
++ +L LD S N I E+ V KL LN+L + N ++ L+L +L +LD
Sbjct: 165 DVTPQTQLTTLDCSFNKIT-ELDVSQNKL--LNRLNCDTNNITK---LDLNQNIQLTFLD 218
Query: 526 LSANKLKSSIPKSIGNLLRLRYLDLSNNQFGHKIPIELEKLIHLS-------ELDLSYNF 578
S+NKL + L +L Y D S N L KL L E+DL++N
Sbjct: 219 CSSNKLTEI---DVTPLTQLTYFDCSVNPLTELDVSTLSKLTTLHCIQTDLLEIDLTHN- 274
Query: 579 LGEEIPFQICNVKSLEKLNLCHNNLL 604
+ I FQ + +++L++ HN L
Sbjct: 275 -TQLIYFQAEGCRKIKELDVTHNTQL 299
>pdb|3T6Q|A Chain A, Crystal Structure Of Mouse Rp105MD-1 Complex
pdb|3T6Q|B Chain B, Crystal Structure Of Mouse Rp105MD-1 Complex
Length = 606
Score = 38.5 bits (88), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 34/108 (31%), Positives = 55/108 (50%), Gaps = 4/108 (3%)
Query: 473 LQVLDLSSNSIVGEIPVQLGKLFSLNKLILNLNQLSGGMPLELGSLTELQYLDLSANKLK 532
LQ LDL++ + E+P L L +L KL+L+ N+ + + L +L + N +
Sbjct: 280 LQELDLTATHL-SELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKR 338
Query: 533 SSI-PKSIGNLLRLRYLDLSNN--QFGHKIPIELEKLIHLSELDLSYN 577
+ + NL LR LDLS++ + ++L L HL L+LSYN
Sbjct: 339 LELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYN 386
Score = 37.0 bits (84), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 82/333 (24%), Positives = 131/333 (39%), Gaps = 43/333 (12%)
Query: 92 LNLSFNIFFGIIPPQIGNLSKLQYLDLGSNQLSGVIPPEIGHLNQLRILYFDVNQLHGSI 151
+NL + FF I S LQ LDL + LS +P + L+ L+ L N+
Sbjct: 259 INLQKHYFFNISSNTFHCFSGLQELDLTATHLSE-LPSGLVGLSTLKKLVLSANKFEN-- 315
Query: 152 PPEIGQLSLINVLALCHNNLYGSIPS------SLGNLSNLANFYFNNNSL--FDSIPLVL 203
+ Q+S N +L H ++ G+ L NL NL +++ + D L L
Sbjct: 316 ---LCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQL 372
Query: 204 GNLNSLSTMDLSQNQFXXXXXXXXXXXXXXXXXXXXXXXFSGSIPSIIGNLKSLLQLDLS 263
NL+ L +++LS N+ L LDL+
Sbjct: 373 RNLSHLQSLNLSYNEPLSLKT------------------------EAFKECPQLELLDLA 408
Query: 264 ENQL-IGSIPLSFGNLSRLTLMSLFNNLLSGSLPPILGNLKSLSALGLHINQL-SGVI-- 319
+L + F NL L +++L ++LL S + L +L L L N G I
Sbjct: 409 FTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQK 468
Query: 320 PSSIGNLSSLRALYLYNNGLCGFVPEEIRYLKSLSELELCKNHLSGVIPHSIGNLTGLLL 379
+S+ L L L L L LK ++ ++L N L+ ++ +L G+ L
Sbjct: 469 TNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGIYL 528
Query: 380 LNMCENHLSGPIPKSFKNLTSVERVLLNQNNLS 412
N+ NH+S +P L+ + L QN L
Sbjct: 529 -NLASNHISIILPSLLPILSQQRTINLRQNPLD 560
Score = 30.4 bits (67), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 36/108 (33%), Positives = 55/108 (50%), Gaps = 4/108 (3%)
Query: 497 LNKLILNLNQLSGGMPLELGSLTELQYLDLSANKLKSSIPKSIGNLLRLRYLDLSNNQFG 556
L +L L LS +P L L+ L+ L LSANK ++ S N L +L + N
Sbjct: 280 LQELDLTATHLSE-LPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKR 338
Query: 557 HKIPIE-LEKLIHLSELDLSYNFL--GEEIPFQICNVKSLEKLNLCHN 601
++ LE L +L ELDLS++ + + Q+ N+ L+ LNL +N
Sbjct: 339 LELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYN 386
Score = 30.0 bits (66), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 76/306 (24%), Positives = 129/306 (42%), Gaps = 27/306 (8%)
Query: 272 PLSFGNLSRLTLMSL------FNNLLSGSLPPILGNLKSLSALGLHINQLSGVIPSSIGN 325
P F L +++ S+ F N+ S + G L+ L H+++L PS +
Sbjct: 245 PAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSG-LQELDLTATHLSEL----PSGLVG 299
Query: 326 LSSLRALYLYNNGLCGFVPEEIRYLKSLSELELCKNHLSGVI-PHSIGNLTGLLLLNMCE 384
LS+L+ L L N SL+ L + N + + NL L L++
Sbjct: 300 LSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSH 359
Query: 385 NHL--SGPIPKSFKNLTSVERVLLNQNNLSGKVYEAFGDHPNLTFLNLSQNNFCGEISFN 442
+ + S +NL+ ++ + L+ N EAF + P L L+L+ +
Sbjct: 360 DDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLA----FTRLKVK 415
Query: 443 WRNFPKLGTFIVSVNNISGSI----PPEIGDS-PKLQVLDLSSNSI-VGEIPVQ--LGKL 494
P ++ V N+S S+ ++ D P LQ L+L N G I L L
Sbjct: 416 DAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTL 475
Query: 495 FSLNKLILNLNQLSGGMPLELGSLTELQYLDLSANKLKSSIPKSIGNLLRLRYLDLSNNQ 554
L L+L+ LS SL + ++DLS N+L SS +++ +L + YL+L++N
Sbjct: 476 GRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNH 534
Query: 555 FGHKIP 560
+P
Sbjct: 535 ISIILP 540
>pdb|3ULU|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form1)
pdb|3ULV|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form2)
Length = 694
Score = 38.1 bits (87), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 130/500 (26%), Positives = 196/500 (39%), Gaps = 35/500 (7%)
Query: 111 SKLQYLDLGSNQLSGVIPPEIGHLNQLRILYFDVNQLHGSIPPEIGQ-LSLINVLALCHN 169
+ + L+L NQL + +QL L N + + PE+ Q L ++ VL L HN
Sbjct: 35 TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTI-SKLEPELCQKLPMLKVLNLQHN 93
Query: 170 NLYGSIPSSLGNLSNLANFYFNNNSL--FDSIPLVLGNLNSLSTMDLSQNQFXXX---XX 224
L + +NL + +NS+ + P V +L T+DLS N
Sbjct: 94 ELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFV--KQKNLITLDLSHNGLSSTKLGTQ 151
Query: 225 XXXXXXXXXXXXXXXXXXFSGSIPSIIGNLKSLLQLDLSENQLIGSIPLSFGNLSRLTLM 284
I N SL +L+LS NQ+ P F + RL +
Sbjct: 152 VQLENLQELLLSNNKIQALKSEELDIFAN-SSLKKLELSSNQIKEFSPGCFHAIGRLFGL 210
Query: 285 SLFNNLLSGSLPPIL----GNLKSLSALGLHINQLSGVIPSSIGNL--SSLRALYLYNNG 338
L N L SL L N S+ L L +QLS ++ L ++L L L N
Sbjct: 211 FLNNVQLGPSLTEKLCLELAN-TSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNN 269
Query: 339 LCGFVPEEIRYLKSLSELELCKNHLSGVIPHSIGNLTGLLLLNMCENHLSGPI-----PK 393
L + +L L L N++ + HS+ L + LN+ + I PK
Sbjct: 270 LNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPK 329
Query: 394 ----SFKNLTSVERVLLNQNNLSGKVYEAFGDHPNLTFLNLSQNNFCGEISFNWRNFPKL 449
SF+ L +E + + N++ G F NL +L+LS N+F + F L
Sbjct: 330 IDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLS-NSFTSLRTLTNETFVSL 388
Query: 450 GTFIVSVNNISGSIPPEIGDSP-----KLQVLDLSSNSIVGEIPVQLGK-LFSLNKLILN 503
+ + N++ + +I L+VLDL N I E+ Q + L ++ ++ L+
Sbjct: 389 AHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLS 448
Query: 504 LNQLSGGMPLELGSLTELQYLDLSANKLK--SSIPKSIGNLLRLRYLDLSNNQFGHKIPI 561
N+ + LQ L L LK S P L L LDLSNN +
Sbjct: 449 YNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDD 508
Query: 562 ELEKLIHLSELDLSYNFLGE 581
LE L L LDL +N L
Sbjct: 509 MLEGLEKLEILDLQHNNLAR 528
Score = 36.6 bits (83), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 90/345 (26%), Positives = 129/345 (37%), Gaps = 64/345 (18%)
Query: 310 LHINQLSGVIPSSIGNLSSLRALYLYNNGLCGFVPEEIRYLKSLSELELCKNHLSGVIPH 369
L + Q+ +P++I L L +N L L+ L++ N +S + P
Sbjct: 24 LKLTQVPDDLPTNIT------VLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPE 77
Query: 370 SIGNLTGLLLLNMCENHLSGPIPKSFKNLTSVERVLLNQNNLSGKVYEAFGDHPNLTFLN 429
L L +LN+ N LS K+F T++ + L N++ F NL L+
Sbjct: 78 LCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLD 137
Query: 430 LSQNNFCGEISFNWRNFPKLGTFI---------VSVNNISG--SIPPEIGDSPKLQVLDL 478
LS N KLGT + +S N I S +I + L+ L+L
Sbjct: 138 LSHNGLSS---------TKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLEL 188
Query: 479 SSNSIVGEIP---VQLGKLFSL------------NKLILNL------------NQLSGGM 511
SSN I P +G+LF L KL L L +QLS
Sbjct: 189 SSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTS 248
Query: 512 PLELGSL--TELQYLDLSANKLKSSIPKSIGNLLRLRYLDLSNNQFGHKIPIELEKLIHL 569
L T L LDLS N L S L +L Y L N H L L ++
Sbjct: 249 NTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNV 308
Query: 570 SELDLSYNFLGEEI---------PFQICNVKSLEKLNLCHNNLLG 605
L+L +F + I F +K LE LN+ N++ G
Sbjct: 309 RYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPG 353
Score = 30.0 bits (66), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 144/575 (25%), Positives = 227/575 (39%), Gaps = 64/575 (11%)
Query: 83 FSSFPHLVQLNLSFNIFFGIIPPQIGNLSKLQYLDLGSNQLSGVIPPEIGHLNQLRILYF 142
F+ + L L++ FN + P L L+ L+L N+LS + L L+
Sbjct: 55 FTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHL 114
Query: 143 DVNQLHG-SIPPEIGQLSLINVLALCHNNLYGSIPSSLGNLSNLANFYFNNNSL--FDSI 199
N + P + Q +LI L L HN L + + L NL +NN + S
Sbjct: 115 MSNSIQKIKNNPFVKQKNLI-TLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSE 173
Query: 200 PLVLGNLNSLSTMDLSQNQFXXXXXXXXXXXXXXXXXXXXXXXFSGSIPSIIGNL----- 254
L + +SL ++LS NQ PS+ L
Sbjct: 174 ELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLG---PSLTEKLCLELA 230
Query: 255 -KSLLQLDLSENQLIGSIPLSFGNL--SRLTLMSL-FNNLLSGSLPPILGN-----LKSL 305
S+ L LS +QL + +F L + LT++ L +NNL ++GN L L
Sbjct: 231 NTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNL------NVVGNDSFAWLPQL 284
Query: 306 SALGLHINQLSGVIPSSIGNLSSLRALYLYNNGLCGFVPEEI-------------RYLKS 352
L N + + S+ L ++R L L F + I ++LK
Sbjct: 285 EYFFLEYNNIQHLFSHSLHGLFNVRYLNLKR----SFTKQSISLASLPKIDDFSFQWLKC 340
Query: 353 LSELELCKNHLSGVIPHSIGNLTGLLLLNMCENH--LSGPIPKSFKNLTSVERVLLN--Q 408
L L + N + G+ + L L L++ + L ++F +L +LN +
Sbjct: 341 LEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTK 400
Query: 409 NNLSGKVYEAFGDHPNLTFLNLSQNNFCGEIS-FNWRNFPKLGTFIVSVNNISGSIPPEI 467
N +S +AF +L L+L N E++ WR + +S N
Sbjct: 401 NKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSF 460
Query: 468 GDSPKLQVLDLSSNSI--VGEIPVQLGKLFSLNKLILNLNQLSGGMPLELGSLTELQYLD 525
P LQ L L ++ V P L +L L L+ N ++ L L +L+ LD
Sbjct: 461 ALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILD 520
Query: 526 LSANKL----KSSIPKS----IGNLLRLRYLDLSNNQFGHKIPIELEK-LIHLSELDLSY 576
L N L K + P + L L L+L +N F +IP+E+ K L L +DL
Sbjct: 521 LQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFD-EIPVEVFKDLFELKIIDLGL 579
Query: 577 NFLGEEIPFQICNVK-SLEKLNLCHNNLLGSFQQK 610
N L +P + N + SL+ LNL NL+ S ++K
Sbjct: 580 NNLN-TLPASVFNNQVSLKSLNL-QKNLITSVEKK 612
>pdb|2R9U|A Chain A, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|B Chain B, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|C Chain C, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|D Chain D, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
Length = 174
Score = 38.1 bits (87), Expect = 0.015, Method: Composition-based stats.
Identities = 29/93 (31%), Positives = 44/93 (47%), Gaps = 2/93 (2%)
Query: 245 GSIPSIIGNLKSLLQLDLSENQLIGSIPLSFGNLSRLTLMSLFNNLLSGSLPPILGNLKS 304
S+P+ I K +L L+ NQ+ P F +L L + +N L+ + L
Sbjct: 25 ASVPAGIPTDKQ--RLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQ 82
Query: 305 LSALGLHINQLSGVIPSSIGNLSSLRALYLYNN 337
L+ L L+ N L + + NL SL +YLYNN
Sbjct: 83 LTQLDLNDNHLKSIPRGAFDNLKSLTHIYLYNN 115
Score = 36.6 bits (83), Expect = 0.044, Method: Composition-based stats.
Identities = 32/98 (32%), Positives = 48/98 (48%), Gaps = 4/98 (4%)
Query: 97 NIFFGIIPPQIGNLSKLQYLDLGSNQLSGVIPPEIGHLNQLRILYFDVNQLHGSIPPEIG 156
NI +P I + Q L L +NQ++ + P HL L+ LYF+ N+L
Sbjct: 21 NIRLASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFD 78
Query: 157 QLSLINVLALCHNNLYGSIP-SSLGNLSNLANFYFNNN 193
+L+ + L L N+L SIP + NL +L + Y NN
Sbjct: 79 KLTQLTQLDLNDNHL-KSIPRGAFDNLKSLTHIYLYNN 115
Score = 36.2 bits (82), Expect = 0.056, Method: Composition-based stats.
Identities = 34/102 (33%), Positives = 48/102 (47%), Gaps = 3/102 (2%)
Query: 453 IVSVNNIS-GSIPPEIGDSPKLQVLDLSSNSIVGEIPVQLGKLFSLNKLILNLNQLSGGM 511
+V+ NI S+P I Q L L++N I P L +L +L N N+L+
Sbjct: 16 LVNCQNIRLASVPAGIPTDK--QRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIP 73
Query: 512 PLELGSLTELQYLDLSANKLKSSIPKSIGNLLRLRYLDLSNN 553
LT+L LDL+ N LKS + NL L ++ L NN
Sbjct: 74 TGVFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYLYNN 115
Score = 35.4 bits (80), Expect = 0.10, Method: Composition-based stats.
Identities = 23/78 (29%), Positives = 36/78 (46%)
Query: 332 LYLYNNGLCGFVPEEIRYLKSLSELELCKNHLSGVIPHSIGNLTGLLLLNMCENHLSGPI 391
L+L NN + P +L +L +L N L+ + LT L L++ +NHL
Sbjct: 38 LWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSIP 97
Query: 392 PKSFKNLTSVERVLLNQN 409
+F NL S+ + L N
Sbjct: 98 RGAFDNLKSLTHIYLYNN 115
Score = 32.7 bits (73), Expect = 0.66, Method: Composition-based stats.
Identities = 22/78 (28%), Positives = 37/78 (47%)
Query: 308 LGLHINQLSGVIPSSIGNLSSLRALYLYNNGLCGFVPEEIRYLKSLSELELCKNHLSGVI 367
L L+ NQ++ + P +L +L+ LY +N L L L++L+L NHL +
Sbjct: 38 LWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSIP 97
Query: 368 PHSIGNLTGLLLLNMCEN 385
+ NL L + + N
Sbjct: 98 RGAFDNLKSLTHIYLYNN 115
Score = 30.0 bits (66), Expect = 4.4, Method: Composition-based stats.
Identities = 20/57 (35%), Positives = 28/57 (49%), Gaps = 2/57 (3%)
Query: 164 LALCHNNLYGSIPSSLGNLSNLANFYFNNNSLFDSIPL-VLGNLNSLSTMDLSQNQF 219
L L +N + P +L NL YFN+N L +IP V L L+ +DL+ N
Sbjct: 38 LWLNNNQITKLEPGVFDHLVNLQQLYFNSNKL-TAIPTGVFDKLTQLTQLDLNDNHL 93
>pdb|2V70|A Chain A, Third Lrr Domain Of Human Slit2
pdb|2V70|B Chain B, Third Lrr Domain Of Human Slit2
pdb|2V70|C Chain C, Third Lrr Domain Of Human Slit2
pdb|2V70|D Chain D, Third Lrr Domain Of Human Slit2
Length = 220
Score = 37.7 bits (86), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 34/112 (30%), Positives = 51/112 (45%)
Query: 250 IIGNLKSLLQLDLSENQLIGSIPLSFGNLSRLTLMSLFNNLLSGSLPPILGNLKSLSALG 309
I L L +++ S N++ +F S + + L +N L + L+SL L
Sbjct: 52 IFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLM 111
Query: 310 LHINQLSGVIPSSIGNLSSLRALYLYNNGLCGFVPEEIRYLKSLSELELCKN 361
L N+++ V S LSS+R L LY+N + P L SLS L L N
Sbjct: 112 LRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLAN 163
>pdb|3G3B|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|C Chain C, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|E Chain E, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|G Chain G, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
Length = 170
Score = 37.7 bits (86), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 29/93 (31%), Positives = 46/93 (49%), Gaps = 2/93 (2%)
Query: 245 GSIPSIIGNLKSLLQLDLSENQLIGSIPLSFGNLSRLTLMSLFNNLLSGSLPPILGNLKS 304
S+P+ I +L L +N++ P F L++LT + L NN L+ + L
Sbjct: 22 ASVPTGIPTTTQVLYL--YDNRITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQ 79
Query: 305 LSALGLHINQLSGVIPSSIGNLSSLRALYLYNN 337
L+ L L+ NQL + + NL SL ++L NN
Sbjct: 80 LTQLSLNDNQLKSIPRGAFDNLRSLTHIWLLNN 112
Score = 34.7 bits (78), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 37/126 (29%), Positives = 59/126 (46%), Gaps = 14/126 (11%)
Query: 319 IPSSIGNLSSLRALYLYNNGLCGFVPEEIRYLKSLSELELCKNHLSGVIPHSI-GNLTGL 377
+P+ I ++ + LYLY+N + P L L+ L+L N L+ V+P + LT L
Sbjct: 24 VPTGIP--TTTQVLYLYDNRITKLEPGVFDRLTQLTRLDLDNNQLT-VLPAGVFDKLTQL 80
Query: 378 LLLNMCENHLSGPIPK-SFKNLTSVERVLLNQNNLSGKVYE------AFGDHPNLTF--L 428
L++ +N L IP+ +F NL S+ + L N + HP L F L
Sbjct: 81 TQLSLNDNQLKS-IPRGAFDNLRSLTHIWLLNNPWDCACSDILYLSRWISQHPWLVFGYL 139
Query: 429 NLSQNN 434
NL ++
Sbjct: 140 NLDHDS 145
Score = 33.5 bits (75), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 36/107 (33%), Positives = 51/107 (47%), Gaps = 4/107 (3%)
Query: 450 GTFIVSVNNISGSIPPEIGDSPKLQVLDLSSNSIVGEIPVQLGKLFSLNKLILNLNQLSG 509
GT + S+P I + QVL L N I P +L L +L L+ NQL+
Sbjct: 11 GTTVDCSGKSLASVPTGIPTT--TQVLYLYDNRITKLEPGVFDRLTQLTRLDLDNNQLTV 68
Query: 510 GMPLELGSLTELQYLDLSANKLKSSIPK-SIGNLLRLRYLDLSNNQF 555
LT+L L L+ N+LK SIP+ + NL L ++ L NN +
Sbjct: 69 LPAGVFDKLTQLTQLSLNDNQLK-SIPRGAFDNLRSLTHIWLLNNPW 114
>pdb|1H6U|A Chain A, Internalin H: Crystal Structure Of Fused N-Terminal
Domains
Length = 308
Score = 37.0 bits (84), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 40/140 (28%), Positives = 67/140 (47%), Gaps = 10/140 (7%)
Query: 249 SIIGNLKSLLQLDLSENQLIGSIPLSFGNLSRLTLMSLFNNLLSGSLPPILGNLKSLSAL 308
S I L+S+ LDL+ Q+ PL+ LS L ++ L N ++ P L L +L L
Sbjct: 101 SAIAGLQSIKTLDLTSTQITDVTPLA--GLSNLQVLYLDLNQITNISP--LAGLTNLQYL 156
Query: 309 GLHINQLSGVIPSSIGNLSSLRALYLYNNGLCGFVPEEIRYLKSLSELELCKNHLSGVIP 368
+ Q+S + P + NLS L L +N + P + L +L E+ L N +S V P
Sbjct: 157 SIGNAQVSDLTP--LANLSKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQISDVSP 212
Query: 369 HSIGNLTGLLLLNMCENHLS 388
+ N + L ++ + ++
Sbjct: 213 --LANTSNLFIVTLTNQTIT 230
Score = 33.9 bits (76), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 35/116 (30%), Positives = 52/116 (44%), Gaps = 24/116 (20%)
Query: 107 IGNLSKLQYLDLGSNQLSGVIPPEIGHLNQLRILYFDVNQLHGSIPPEIG---------- 156
I L ++ LDL S Q++ V P + L+ L++LY D+NQ+ +I P G
Sbjct: 103 IAGLQSIKTLDLTSTQITDVTP--LAGLSNLQVLYLDLNQIT-NISPLAGLTNLQYLSIG 159
Query: 157 --QLSLINVLA--------LCHNNLYGSIPSSLGNLSNLANFYFNNNSLFDSIPLV 202
Q+S + LA +N I S L +L NL + NN + D PL
Sbjct: 160 NAQVSDLTPLANLSKLTTLKADDNKISDI-SPLASLPNLIEVHLKNNQISDVSPLA 214
>pdb|2WQW|A Chain A, Double-Disulfide Cross-Linked Crystal Dimer Of The
Listeria Monocytogenes Inlb Internalin Domain
pdb|2WQW|B Chain B, Double-Disulfide Cross-Linked Crystal Dimer Of The
Listeria Monocytogenes Inlb Internalin Domain
Length = 286
Score = 37.0 bits (84), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 43/89 (48%), Gaps = 9/89 (10%)
Query: 298 ILGNLKSLSALGLHINQLSGVIPSSIGNLSSLRALYLYNN------GLCGFVPEEIRYLK 351
+L L L L L NQ+S ++P + L+ L+ LYL N LCG ++ L
Sbjct: 146 VLSRLTKLDTLSLEDNQISDIVP--LACLTKLQNLYLSKNHISDLRALCGLKNLDVLELF 203
Query: 352 SLSELELCKNHLSG-VIPHSIGNLTGLLL 379
S L NH S V+P+++ N G L+
Sbjct: 204 SQEALNKPINHQSNLVVPNTVKNTDGSLV 232
>pdb|2WQX|A Chain A, Inlb321_4r: S199r, D200r, G206r, A227r, C242a Mutant Of
The Listeria Monocytogenes Inlb Internalin Domain
pdb|2WQX|B Chain B, Inlb321_4r: S199r, D200r, G206r, A227r, C242a Mutant Of
The Listeria Monocytogenes Inlb Internalin Domain
Length = 289
Score = 36.2 bits (82), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 44/91 (48%), Gaps = 13/91 (14%)
Query: 298 ILGNLKSLSALGLHINQLSGVIPSSIGNLSSLRALYLYNNGLCGFVPEEIRYLKSLSELE 357
+L L L L L NQ+ ++P + L+ L+ LYL N + +R LK+L LE
Sbjct: 149 VLSRLTKLDTLSLEDNQIRRIVP--LARLTKLQNLYLSKNHISDL--RALRGLKNLDVLE 204
Query: 358 LCK--------NHLSG-VIPHSIGNLTGLLL 379
L NH S V+P+++ N G L+
Sbjct: 205 LFSQEALNKPINHQSNLVVPNTVKNTDGSLV 235
>pdb|2O6S|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
pdb|2O6S|B Chain B, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
Length = 208
Score = 36.2 bits (82), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 40/130 (30%), Positives = 57/130 (43%), Gaps = 2/130 (1%)
Query: 450 GTFIVSVNNISGSIPPEIGDSPKLQVLDLSSNSIVGEIPVQLGKLFSLNKLILNLNQLSG 509
GT + + S+P G + LDL +NS+ +L SL +L L N+L
Sbjct: 9 GTTVECYSQGRTSVP--TGIPAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQS 66
Query: 510 GMPLELGSLTELQYLDLSANKLKSSIPKSIGNLLRLRYLDLSNNQFGHKIPIELEKLIHL 569
LT L YL+LS N+L+S L +L+ L L+ NQ +KL L
Sbjct: 67 LPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQL 126
Query: 570 SELDLSYNFL 579
+L L N L
Sbjct: 127 KDLRLYQNQL 136
Score = 33.9 bits (76), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 40/121 (33%), Positives = 53/121 (43%), Gaps = 4/121 (3%)
Query: 250 IIGNLKSLLQLDLSENQLIGSIPLSFGNLSRLTLMSLFNNLLSGSLP-PILGNLKSLSAL 308
+ L SL QL L N+L F L+ LT ++L N L SLP + L L L
Sbjct: 47 VFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQ-SLPNGVFDKLTQLKEL 105
Query: 309 GLHINQLSGVIPSSIGNLSSLRALYLYNNGLCGFVPEEI-RYLKSLSELELCKNHLSGVI 367
L+ NQL + L+ L+ L LY N L VP+ + L SL + L N
Sbjct: 106 ALNTNQLQSLPDGVFDKLTQLKDLRLYQNQL-KSVPDGVFDRLTSLQYIWLHDNPWDCTC 164
Query: 368 P 368
P
Sbjct: 165 P 165
Score = 32.3 bits (72), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 40/88 (45%)
Query: 473 LQVLDLSSNSIVGEIPVQLGKLFSLNKLILNLNQLSGGMPLELGSLTELQYLDLSANKLK 532
L L+LS+N + KL L +L LN NQL LT+L+ L L N+LK
Sbjct: 78 LTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLK 137
Query: 533 SSIPKSIGNLLRLRYLDLSNNQFGHKIP 560
S L L+Y+ L +N + P
Sbjct: 138 SVPDGVFDRLTSLQYIWLHDNPWDCTCP 165
Score = 32.0 bits (71), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 39/161 (24%), Positives = 64/161 (39%), Gaps = 13/161 (8%)
Query: 51 CAWLGISCNQAGRV----------ISINLSSMALNGTLQEFAFSSFPHLVQLNLSFNIFF 100
C+ + C GR ++L + +L +L F L QL L N
Sbjct: 7 CSGTTVECYSQGRTSVPTGIPAQTTYLDLETNSLK-SLPNGVFDELTSLTQLYLGGNKLQ 65
Query: 101 GIIPPQIGNLSKLQYLDLGSNQLSGVIPPEIGHLNQLRILYFDVNQLHGSIPPEI-GQLS 159
+ L+ L YL+L +NQL + L QL+ L + NQL S+P + +L+
Sbjct: 66 SLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQ-SLPDGVFDKLT 124
Query: 160 LINVLALCHNNLYGSIPSSLGNLSNLANFYFNNNSLFDSIP 200
+ L L N L L++L + ++N + P
Sbjct: 125 QLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCP 165
>pdb|4FCG|A Chain A, Structure Of The Leucine-Rich Repeat Domain Of The Type
Iii Effector Xcv3220 (Xopl)
Length = 328
Score = 35.8 bits (81), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 56/232 (24%), Positives = 87/232 (37%), Gaps = 37/232 (15%)
Query: 320 PSSIGNLSSLRALYLYNNGLCGFVPEEIRYLKSLSELELCKNHLSGVIPHSIGNLTGLLL 379
P LS L+ + GL P+ + L L L +N L +P SI +L L
Sbjct: 97 PDQAFRLSHLQHXTIDAAGLXEL-PDTXQQFAGLETLTLARNPLRA-LPASIASLNRLRE 154
Query: 380 LNMCENHLSGPIPKSFKNLTSVERVLLNQNNLSGKVYEAFGDHPNLTFLNLSQNNFCGEI 439
L++ ++ LT + L + +A G+H L L +
Sbjct: 155 LSI----------RACPELTELPEPLAS--------TDASGEHQGLVNLQ--------SL 188
Query: 440 SFNWRNFPKLGTFIVSVNNISG---------SIPPEIGDSPKLQVLDLSSNSIVGEIPVQ 490
W L I ++ N+ ++ P I PKL+ LDL + + P
Sbjct: 189 RLEWTGIRSLPASIANLQNLKSLKIRNSPLSALGPAIHHLPKLEELDLRGCTALRNYPPI 248
Query: 491 LGKLFSLNKLILNLNQLSGGMPLELGSLTELQYLDLSANKLKSSIPKSIGNL 542
G L +LIL +PL++ LT+L+ LDL S +P I L
Sbjct: 249 FGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQL 300
>pdb|3ZYI|A Chain A, Netring2 In Complex With Ngl2
Length = 452
Score = 35.4 bits (80), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 54/191 (28%), Positives = 82/191 (42%), Gaps = 3/191 (1%)
Query: 254 LKSLLQLDLSENQLIGSIPLSFGNLSRLTLMSLFNNLLSGSLPPILGNLKSLSALGLHIN 313
L SL L+L +N L +F LS+L + L NN + S+P N + S + L +
Sbjct: 122 LASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIE-SIPSYAFN-RVPSLMRLDLG 179
Query: 314 QLSGVIPSSIGNLSSLRALYLYNNGLCGFVP-EEIRYLKSLSELELCKNHLSGVIPHSIG 372
+L + S G L L N G+C + L L ELE+ NH + P S
Sbjct: 180 ELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMPNLTPLVGLEELEMSGNHFPEIRPGSFH 239
Query: 373 NLTGLLLLNMCENHLSGPIPKSFKNLTSVERVLLNQNNLSGKVYEAFGDHPNLTFLNLSQ 432
L+ L L + + +S +F L S+ + L NNLS ++ F L L+L
Sbjct: 240 GLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHH 299
Query: 433 NNFCGEISFNW 443
N + + W
Sbjct: 300 NPWNCDCDILW 310
Score = 33.9 bits (76), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 69/269 (25%), Positives = 101/269 (37%), Gaps = 55/269 (20%)
Query: 105 PQIGNLSKLQYLDLGSNQLSGVIPPEIGHLNQLRILYFDVNQLHGSIPPEIGQLSLINVL 164
PQ G S +YL+L N + + HL+ L +L N + L+ +N L
Sbjct: 70 PQ-GIPSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTL 128
Query: 165 ALCHNNLYGSIPS-SLGNLSNLANFYFNNNSLFDSIP-LVLGNLNSLSTMDLSQNQFXXX 222
L +N IPS + LS L + NN + +SIP + SL +DL
Sbjct: 129 EL-FDNWLTVIPSGAFEYLSKLRELWLRNNPI-ESIPSYAFNRVPSLMRLDL-------- 178
Query: 223 XXXXXXXXXXXXXXXXXXXXFSGSIPSIIGNLKSLLQLDLSENQLIGSIPLSFGNLSRLT 282
G LK L +SE G L + NL
Sbjct: 179 -----------------------------GELKKLEY--ISEGAFEGLFNLKYLNLGMCN 207
Query: 283 LMSLFNNLLSGSLPPILGNLKSLSALGLHINQLSGVIPSSIGNLSSLRALYLYNNGLCGF 342
+ + N L P++G L L + N + P S LSSL+ L++ N+ +
Sbjct: 208 IKDMPN------LTPLVG----LEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLI 257
Query: 343 VPEEIRYLKSLSELELCKNHLSGVIPHSI 371
L SL EL L N+LS +PH +
Sbjct: 258 ERNAFDGLASLVELNLAHNNLSS-LPHDL 285
Score = 29.6 bits (65), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 62/225 (27%), Positives = 96/225 (42%), Gaps = 7/225 (3%)
Query: 380 LNMCENHLSGPIPKSFKNLTSVERVLLNQNNLSGKVYEAFGDHPNLTFLNLSQNNFCGEI 439
LN+ EN++ +F++L +E + L +N++ AF +L L L N
Sbjct: 80 LNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIP 139
Query: 440 SFNWRNFPKLGTFIVSVNNISGSIPP-EIGDSPKLQVLDLSSNSIVGEIPV-QLGKLFSL 497
S + KL + N I SIP P L LDL + I LF+L
Sbjct: 140 SGAFEYLSKLRELWLRNNPIE-SIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNL 198
Query: 498 NKLILNLNQLSGGMPLELGSLTELQYLDLSANKLKSSIPKSIGNLLRLRYLDLSNNQFGH 557
L L + + MP L L L+ L++S N P S L L+ L + N+Q
Sbjct: 199 KYLNLGMCNIK-DMP-NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSL 256
Query: 558 KIPIELEKLIHLSELDLSYNFLGEEIPFQICN-VKSLEKLNLCHN 601
+ L L EL+L++N L +P + ++ L +L+L HN
Sbjct: 257 IERNAFDGLASLVELNLAHNNLS-SLPHDLFTPLRYLVELHLHHN 300
>pdb|3J0A|A Chain A, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
pdb|3J0A|B Chain B, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
Length = 844
Score = 35.0 bits (79), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 73/298 (24%), Positives = 116/298 (38%), Gaps = 57/298 (19%)
Query: 301 NLKSLSALGLHINQLSGVIPSSIGNLSSLRALYLYNNGLCGFVPEE--IRYLKSLSELEL 358
NL +L L L +++ + P + L L L LY GL V ++ R LK+L+ L+L
Sbjct: 71 NLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDL 130
Query: 359 CKNHLSGVIPH-SIGNLTGLLLLNMCENHLSGPIPKSFKNLTSVERVLLNQNNLSGKVYE 417
KN + + H S G L L ++ N + E L L GK
Sbjct: 131 SKNQIRSLYLHPSFGKLNSLKSIDFSSNQI----------FLVCEHEL---EPLQGKT-- 175
Query: 418 AFGDHPNLTFLNLSQNNFCGEISFNWRNFPKLGTFIVSVNNISGSIPPEIGDSPKLQVLD 477
L+F +L+ N+ +S +W G + N+ L++LD
Sbjct: 176 -------LSFFSLAANSLYSRVSVDW------GKCMNPFRNMV------------LEILD 210
Query: 478 LSSNSIVGEIPVQLGKLFSLNK---LILNLNQLSGGMPLE---------LGSLTE--LQY 523
+S N +I S ++ LIL + + G L +++
Sbjct: 211 VSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRH 270
Query: 524 LDLSANKLKSSIPKSIGNLLRLRYLDLSNNQFGHKIPIELEKLIHLSELDLSYNFLGE 581
LDLS + S + L L+ L+L+ N+ L +L L+LSYN LGE
Sbjct: 271 LDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGE 328
Score = 34.3 bits (77), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 73/277 (26%), Positives = 114/277 (41%), Gaps = 31/277 (11%)
Query: 253 NLKSLLQLDLSENQLIGSIPL--SFGNLSRLTLMSLFNN----LLSGSLPPILGNLKSLS 306
NLK+L +LDLS+NQ I S+ L SFG L+ L + +N + L P+ G K+LS
Sbjct: 121 NLKALTRLDLSKNQ-IRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQG--KTLS 177
Query: 307 ALGLHINQLSGVIPSSIGN-LSSLRALYL---------YNNGLCGFVPEEIRYLKSLSEL 356
L N L + G ++ R + L + + G I ++ S +
Sbjct: 178 FFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLI 237
Query: 357 ELCKNHLSGVIPHSIGN-----LTGLLL-----LNMCENHLSGPIPKSFKNLTSVERVLL 406
+G H+I + GL L++ + + F+ L ++ + L
Sbjct: 238 LAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNL 297
Query: 407 NQNNLSGKVYEAFGDHPNLTFLNLSQNNFCGEISFNWRNFPKLGTFIVSVNNISGSIPPE 466
N ++ EAF NL LNLS N S N+ PK+ + N+I+
Sbjct: 298 AYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQT 357
Query: 467 IGDSPKLQVLDLSSNSI--VGEIPVQLGKLFSLNKLI 501
KLQ LDL N++ + IP S NKL+
Sbjct: 358 FKFLEKLQTLDLRDNALTTIHFIPSIPDIFLSGNKLV 394
>pdb|4AW4|A Chain A, Engineered Variant Of Listeria Monocytogenes Inlb
Internalin Domain With An Additional Leucine Rich Repeat
Inserted
pdb|4AW4|B Chain B, Engineered Variant Of Listeria Monocytogenes Inlb
Internalin Domain With An Additional Leucine Rich Repeat
Inserted
pdb|4AW4|C Chain C, Engineered Variant Of Listeria Monocytogenes Inlb
Internalin Domain With An Additional Leucine Rich Repeat
Inserted
Length = 311
Score = 34.7 bits (78), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 44/91 (48%), Gaps = 13/91 (14%)
Query: 298 ILGNLKSLSALGLHINQLSGVIPSSIGNLSSLRALYLYNNGLCGFVPEEIRYLKSLSELE 357
+L L L L L NQ+S ++P + L+ L+ LYL N + + LK+L LE
Sbjct: 171 VLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDL--RALAGLKNLDVLE 226
Query: 358 LCK--------NHLSG-VIPHSIGNLTGLLL 379
L NH S V+P+++ N G L+
Sbjct: 227 LFSQECLNKPINHQSNLVVPNTVKNTDGSLV 257
>pdb|2UZX|A Chain A, Structure Of The Human Receptor Tyrosine Kinase Met In
Complex With The Listeria Monocytogenes Invasion Protein
Inlb: Crystal Form I
pdb|2UZX|C Chain C, Structure Of The Human Receptor Tyrosine Kinase Met In
Complex With The Listeria Monocytogenes Invasion Protein
Inlb: Crystal Form I
pdb|2UZY|A Chain A, Structure Of The Human Receptor Tyrosine Kinase Met In
Complex With The Listeria Monocytogenes Invasion Protein
Inlb: Low Resolution, Crystal Form Ii
pdb|2UZY|C Chain C, Structure Of The Human Receptor Tyrosine Kinase Met In
Complex With The Listeria Monocytogenes Invasion Protein
Inlb: Low Resolution, Crystal Form Ii
pdb|2WQU|A Chain A, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|B Chain B, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|C Chain C, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|D Chain D, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|E Chain E, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|F Chain F, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQV|A Chain A, Internalin Domain Of Listeria Monocytogenes Inlb:
Rhombohedral Crystal Form
pdb|2WQV|B Chain B, Internalin Domain Of Listeria Monocytogenes Inlb:
Rhombohedral Crystal Form
Length = 289
Score = 34.7 bits (78), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 44/91 (48%), Gaps = 13/91 (14%)
Query: 298 ILGNLKSLSALGLHINQLSGVIPSSIGNLSSLRALYLYNNGLCGFVPEEIRYLKSLSELE 357
+L L L L L NQ+S ++P + L+ L+ LYL N + + LK+L LE
Sbjct: 149 VLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDL--RALAGLKNLDVLE 204
Query: 358 LCK--------NHLSG-VIPHSIGNLTGLLL 379
L NH S V+P+++ N G L+
Sbjct: 205 LFSQECLNKPINHQSNLVVPNTVKNTDGSLV 235
>pdb|1H6T|A Chain A, Internalin B: Crystal Structure Of Fused N-Terminal
Domains
Length = 291
Score = 34.3 bits (77), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 44/91 (48%), Gaps = 13/91 (14%)
Query: 298 ILGNLKSLSALGLHINQLSGVIPSSIGNLSSLRALYLYNNGLCGFVPEEIRYLKSLSELE 357
+L L L L L NQ+S ++P + L+ L+ LYL N + + LK+L LE
Sbjct: 151 VLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDL--RALAGLKNLDVLE 206
Query: 358 LCK--------NHLSG-VIPHSIGNLTGLLL 379
L NH S V+P+++ N G L+
Sbjct: 207 LFSQECLNKPINHQSNLVVPNTVKNTDGSLV 237
>pdb|2Y5Q|A Chain A, Listeria Monocytogenes Inlb (Internalin B) Residues 36-392
Length = 362
Score = 34.3 bits (77), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 44/91 (48%), Gaps = 13/91 (14%)
Query: 298 ILGNLKSLSALGLHINQLSGVIPSSIGNLSSLRALYLYNNGLCGFVPEEIRYLKSLSELE 357
+L L L L L NQ+S ++P + L+ L+ LYL N + + LK+L LE
Sbjct: 151 VLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDL--RALAGLKNLDVLE 206
Query: 358 LCK--------NHLSG-VIPHSIGNLTGLLL 379
L NH S V+P+++ N G L+
Sbjct: 207 LFSQECLNKPINHQSNLVVPNTVKNTDGSLV 237
>pdb|3P72|A Chain A, Structure Of Platelet Glycoprotein 1b Alpha With A Bound
Peptide Inhibitor
Length = 269
Score = 33.9 bits (76), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 33/89 (37%), Positives = 47/89 (52%), Gaps = 3/89 (3%)
Query: 468 GDSPKLQVLDLSSNSIVGEIPVQLGKLFSLNKLILNLNQLSGGMPL-ELGSLTELQYLDL 526
G P L LDLS N + +P+ L +L L ++ N+L+ +PL L L ELQ L L
Sbjct: 74 GTLPVLGTLDLSHNQL-QSLPLLGQTLPALTVLDVSFNRLTS-LPLGALRGLGELQELYL 131
Query: 527 SANKLKSSIPKSIGNLLRLRYLDLSNNQF 555
N+LK+ P + +L L L+NNQ
Sbjct: 132 KGNELKTLPPGLLTPTPKLEKLSLANNQL 160
Score = 32.3 bits (72), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 39/137 (28%), Positives = 65/137 (47%), Gaps = 9/137 (6%)
Query: 259 QLDLSENQLIGSIPLSFGNLSRLTLMSLFNNLLSGSLPPILGNLKSLSALGLHINQLSGV 318
+ +L++ Q+ G++P+ L + L +N L SLP + L +L+ L + N+L+ +
Sbjct: 64 RCELTKLQVDGTLPV-------LGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSL 115
Query: 319 IPSSIGNLSSLRALYLYNNGLCGFVPEEIRYLKSLSELELCKNHLSGVIPHSIGNLTGLL 378
++ L L+ LYL N L P + L +L L N L+ + + L L
Sbjct: 116 PLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLTELPAGLLNGLENLD 175
Query: 379 LLNMCENHLSGPIPKSF 395
L + EN L IPK F
Sbjct: 176 TLLLQENSLYT-IPKGF 191
>pdb|1U0N|D Chain D, The Ternary Von Willebrand Factor A1-Glycoprotein Ibalpha-
Botrocetin Complex
Length = 265
Score = 33.9 bits (76), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 33/89 (37%), Positives = 47/89 (52%), Gaps = 3/89 (3%)
Query: 468 GDSPKLQVLDLSSNSIVGEIPVQLGKLFSLNKLILNLNQLSGGMPL-ELGSLTELQYLDL 526
G P L LDLS N + +P+ L +L L ++ N+L+ +PL L L ELQ L L
Sbjct: 74 GTLPVLGTLDLSHNQL-QSLPLLGQTLPALTVLDVSFNRLTS-LPLGALRGLGELQELYL 131
Query: 527 SANKLKSSIPKSIGNLLRLRYLDLSNNQF 555
N+LK+ P + +L L L+NNQ
Sbjct: 132 KGNELKTLPPGLLTPTPKLEKLSLANNQL 160
Score = 32.3 bits (72), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 39/137 (28%), Positives = 65/137 (47%), Gaps = 9/137 (6%)
Query: 259 QLDLSENQLIGSIPLSFGNLSRLTLMSLFNNLLSGSLPPILGNLKSLSALGLHINQLSGV 318
+ +L++ Q+ G++P+ L + L +N L SLP + L +L+ L + N+L+ +
Sbjct: 64 RCELTKLQVDGTLPV-------LGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSL 115
Query: 319 IPSSIGNLSSLRALYLYNNGLCGFVPEEIRYLKSLSELELCKNHLSGVIPHSIGNLTGLL 378
++ L L+ LYL N L P + L +L L N L+ + + L L
Sbjct: 116 PLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLTELPAGLLNGLENLD 175
Query: 379 LLNMCENHLSGPIPKSF 395
L + EN L IPK F
Sbjct: 176 TLLLQENSLYT-IPKGF 191
>pdb|3O6N|A Chain A, Crystal Structure Of Apl1 Leucine-Rich Repeat Domain
Length = 390
Score = 33.5 bits (75), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 51/190 (26%), Positives = 87/190 (45%), Gaps = 15/190 (7%)
Query: 417 EAFGDHPNLTFLNLSQNNFCGEISFNWRNFPKLGTFIVSVNNISGSIPPEIGDSPKLQVL 476
F + P LT L L +N+ + N PKL T +S NN+ + LQ L
Sbjct: 111 HVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNL 170
Query: 477 DLSSNSIVGEIPVQLGKLFSLNKLILNLNQLSG-GMPLELGSLTELQYLDLSANKLKSSI 535
LSSN + V L + SL ++ N LS +P+ ++ EL S N ++ +
Sbjct: 171 QLSSNRLTH---VDLSLIPSLFHANVSYNLLSTLAIPI---AVEELDASHNSINVVRGPV 224
Query: 536 PKSIGNLLRLRYLDLSNNQFGHKIPIELEKLIHLSELDLSYNFLGEEIPFQICNVKSLEK 595
+ +L+L++ +L++ + P L E+DLSYN L + + ++ LE+
Sbjct: 225 NVELT-ILKLQHNNLTDTAWLLNYP-------GLVEVDLSYNELEKIMYHPFVKMQRLER 276
Query: 596 LNLCHNNLLG 605
L + +N L+
Sbjct: 277 LYISNNRLVA 286
Score = 33.1 bits (74), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 76/267 (28%), Positives = 114/267 (42%), Gaps = 37/267 (13%)
Query: 349 YLKSLSELELCKNHLSGVIPHSIGNLTGLLLLNMCENHLSGPIPKS-FKNLTSVERVLLN 407
Y ++ +L + N + + PH N+ L +L + N LS +P+ F N + + ++
Sbjct: 91 YAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSS-LPRGIFHNTPKLTTLSMS 149
Query: 408 QNNLSGKVYEAFGDHPNLTFLNLSQNNFCG-EISFNWRNFPKLGTFIVSVNNISG-SIPP 465
NNL + F +L L LS N ++S P L VS N +S +IP
Sbjct: 150 NNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSL----IPSLFHANVSYNLLSTLAIPI 205
Query: 466 EIGDSPKLQVLDLSSNSI-VGEIPVQLGKLFSLNKLILNLNQLSG-GMPLELGSLTELQY 523
+ + LD S NSI V PV + L L L N L+ L L E
Sbjct: 206 AVEE------LDASHNSINVVRGPVNV----ELTILKLQHNNLTDTAWLLNYPGLVE--- 252
Query: 524 LDLSANKLKSSIPKSIGNLLRLRYLDLSNNQ------FGHKIPIELEKLIHLSELDLSYN 577
+DLS N+L+ + + RL L +SNN+ +G IP L LDLS+N
Sbjct: 253 VDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPT-------LKVLDLSHN 305
Query: 578 FLGEEIPFQICNVKSLEKLNLCHNNLL 604
L + LE L L HN+++
Sbjct: 306 HLL-HVERNQPQFDRLENLYLDHNSIV 331
>pdb|1M9S|A Chain A, Crystal Structure Of Internalin B (Inlb), A Listeria
Monocytogenes Virulence Protein Containing Sh3-Like
Domains
Length = 605
Score = 33.5 bits (75), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 44/91 (48%), Gaps = 13/91 (14%)
Query: 298 ILGNLKSLSALGLHINQLSGVIPSSIGNLSSLRALYLYNNGLCGFVPEEIRYLKSLSELE 357
+L L L L L NQ+S ++P + L+ L+ LYL N + + LK+L LE
Sbjct: 148 VLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDL--RALAGLKNLDVLE 203
Query: 358 LCK--------NHLSG-VIPHSIGNLTGLLL 379
L NH S V+P+++ N G L+
Sbjct: 204 LFSQECLNKPINHQSNLVVPNTVKNTDGSLV 234
>pdb|1M10|B Chain B, Crystal Structure Of The Complex Of Glycoprotein Ib Alpha
And The Von Willebrand Factor A1 Domain
Length = 290
Score = 33.1 bits (74), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 33/89 (37%), Positives = 47/89 (52%), Gaps = 3/89 (3%)
Query: 468 GDSPKLQVLDLSSNSIVGEIPVQLGKLFSLNKLILNLNQLSGGMPL-ELGSLTELQYLDL 526
G P L LDLS N + +P+ L +L L ++ N+L+ +PL L L ELQ L L
Sbjct: 74 GTLPVLGTLDLSHNQL-QSLPLLGQTLPALTVLDVSFNRLTS-LPLGALRGLGELQELYL 131
Query: 527 SANKLKSSIPKSIGNLLRLRYLDLSNNQF 555
N+LK+ P + +L L L+NNQ
Sbjct: 132 KGNELKTLPPGLLTPTPKLEKLSLANNQL 160
Score = 32.7 bits (73), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 39/137 (28%), Positives = 65/137 (47%), Gaps = 9/137 (6%)
Query: 259 QLDLSENQLIGSIPLSFGNLSRLTLMSLFNNLLSGSLPPILGNLKSLSALGLHINQLSGV 318
+ +L++ Q+ G++P+ L + L +N L SLP + L +L+ L + N+L+ +
Sbjct: 64 RCELTKLQVDGTLPV-------LGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSL 115
Query: 319 IPSSIGNLSSLRALYLYNNGLCGFVPEEIRYLKSLSELELCKNHLSGVIPHSIGNLTGLL 378
++ L L+ LYL N L P + L +L L N L+ + + L L
Sbjct: 116 PLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLTELPAGLLNGLENLD 175
Query: 379 LLNMCENHLSGPIPKSF 395
L + EN L IPK F
Sbjct: 176 TLLLQENSLYT-IPKGF 191
>pdb|1M0Z|A Chain A, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
pdb|1M0Z|B Chain B, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
Length = 290
Score = 33.1 bits (74), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 33/89 (37%), Positives = 47/89 (52%), Gaps = 3/89 (3%)
Query: 468 GDSPKLQVLDLSSNSIVGEIPVQLGKLFSLNKLILNLNQLSGGMPL-ELGSLTELQYLDL 526
G P L LDLS N + +P+ L +L L ++ N+L+ +PL L L ELQ L L
Sbjct: 74 GTLPVLGTLDLSHNQL-QSLPLLGQTLPALTVLDVSFNRLTS-LPLGALRGLGELQELYL 131
Query: 527 SANKLKSSIPKSIGNLLRLRYLDLSNNQF 555
N+LK+ P + +L L L+NNQ
Sbjct: 132 KGNELKTLPPGLLTPTPKLEKLSLANNQL 160
Score = 32.7 bits (73), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 39/137 (28%), Positives = 65/137 (47%), Gaps = 9/137 (6%)
Query: 259 QLDLSENQLIGSIPLSFGNLSRLTLMSLFNNLLSGSLPPILGNLKSLSALGLHINQLSGV 318
+ +L++ Q+ G++P+ L + L +N L SLP + L +L+ L + N+L+ +
Sbjct: 64 RCELTKLQVDGTLPV-------LGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSL 115
Query: 319 IPSSIGNLSSLRALYLYNNGLCGFVPEEIRYLKSLSELELCKNHLSGVIPHSIGNLTGLL 378
++ L L+ LYL N L P + L +L L N L+ + + L L
Sbjct: 116 PLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLTELPAGLLNGLENLD 175
Query: 379 LLNMCENHLSGPIPKSF 395
L + EN L IPK F
Sbjct: 176 TLLLQENSLYT-IPKGF 191
Score = 28.9 bits (63), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 55/198 (27%), Positives = 80/198 (40%), Gaps = 32/198 (16%)
Query: 143 DVNQLHGSIPPEIGQLSLINVLALCHNNLYGSIPSSLGNLSNLANFYFNNNSLFDSIPLV 202
D QL ++PP++ + + I L L N LY ++L + L + L + V
Sbjct: 18 DKRQL-TALPPDLPKDTTI--LHLSENLLYTFSLATLMPYTRLTQLNLDRCEL--TKLQV 72
Query: 203 LGNLNSLSTMDLSQNQFXXXXXXXXXXXXXXXXXXXXXXXFSGSIPSIIGNLKSLLQLDL 262
G L L T+DLS NQ S+P + L +L LD+
Sbjct: 73 DGTLPVLGTLDLSHNQLQ-------------------------SLPLLGQTLPALTVLDV 107
Query: 263 SENQLIGSIPL-SFGNLSRLTLMSLFNNLLSGSLPPILGNLKSLSALGLHINQLSGVIPS 321
S N+L S+PL + L L + L N L P +L L L L NQL+ +
Sbjct: 108 SFNRLT-SLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLTELPAG 166
Query: 322 SIGNLSSLRALYLYNNGL 339
+ L +L L L N L
Sbjct: 167 LLNGLENLDTLLLQENSL 184
Score = 28.9 bits (63), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 40/135 (29%), Positives = 63/135 (46%), Gaps = 14/135 (10%)
Query: 68 NLSSMALNGTLQEFAFSSFPHLVQLNLSFNIFFGIIPPQIG-NLSKLQYLDLGSNQLSGV 126
L+ + ++GTL P L L+LS N + P +G L L LD+ N+L+ +
Sbjct: 66 ELTKLQVDGTL--------PVLGTLDLSHNQLQSL--PLLGQTLPALTVLDVSFNRLTSL 115
Query: 127 IPPEIGHLNQLRILYFDVNQLHGSIPPEIGQLSLINVLALCHNNLYGSIPSSLGN-LSNL 185
+ L +L+ LY N+L P + + L+L +N L +P+ L N L NL
Sbjct: 116 PLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQL-TELPAGLLNGLENL 174
Query: 186 ANFYFNNNSLFDSIP 200
NSL+ +IP
Sbjct: 175 DTLLLQENSLY-TIP 188
>pdb|3PMH|G Chain G, Mechanism Of Sulfotyrosine-Mediated Glycoprotein Ib
Interaction With Two Distinct Alpha-Thrombin Sites
Length = 290
Score = 32.7 bits (73), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 39/137 (28%), Positives = 66/137 (48%), Gaps = 9/137 (6%)
Query: 259 QLDLSENQLIGSIPLSFGNLSRLTLMSLFNNLLSGSLPPILGNLKSLSALGLHINQLSGV 318
+ +L++ Q+ G++P+ L + L +N L SLP + L +L+ L + N+L+ +
Sbjct: 64 RAELTKLQVDGTLPV-------LGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSL 115
Query: 319 IPSSIGNLSSLRALYLYNNGLCGFVPEEIRYLKSLSELELCKNHLSGVIPHSIGNLTGLL 378
++ L L+ LYL N L P + L +L L N+L+ + + L L
Sbjct: 116 PLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLD 175
Query: 379 LLNMCENHLSGPIPKSF 395
L + EN L IPK F
Sbjct: 176 TLLLQENSLYT-IPKGF 191
Score = 31.2 bits (69), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 32/87 (36%), Positives = 46/87 (52%), Gaps = 3/87 (3%)
Query: 468 GDSPKLQVLDLSSNSIVGEIPVQLGKLFSLNKLILNLNQLSGGMPL-ELGSLTELQYLDL 526
G P L LDLS N + +P+ L +L L ++ N+L+ +PL L L ELQ L L
Sbjct: 74 GTLPVLGTLDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLTS-LPLGALRGLGELQELYL 131
Query: 527 SANKLKSSIPKSIGNLLRLRYLDLSNN 553
N+LK+ P + +L L L+NN
Sbjct: 132 KGNELKTLPPGLLTPTPKLEKLSLANN 158
Score = 30.8 bits (68), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 41/134 (30%), Positives = 64/134 (47%), Gaps = 14/134 (10%)
Query: 69 LSSMALNGTLQEFAFSSFPHLVQLNLSFNIFFGIIPPQIG-NLSKLQYLDLGSNQLSGVI 127
L+ + ++GTL P L L+LS N + P +G L L LD+ N+L+ +
Sbjct: 67 LTKLQVDGTL--------PVLGTLDLSHNQLQSL--PLLGQTLPALTVLDVSFNRLTSLP 116
Query: 128 PPEIGHLNQLRILYFDVNQLHGSIPPEIGQLSLINVLALCHNNLYGSIPSSLGN-LSNLA 186
+ L +L+ LY N+L P + + L+L +NNL +P+ L N L NL
Sbjct: 117 LGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNL-TELPAGLLNGLENLD 175
Query: 187 NFYFNNNSLFDSIP 200
NSL+ +IP
Sbjct: 176 TLLLQENSLY-TIP 188
>pdb|1OOK|G Chain G, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Human Alpha-thrombin
Length = 290
Score = 32.7 bits (73), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 39/137 (28%), Positives = 66/137 (48%), Gaps = 9/137 (6%)
Query: 259 QLDLSENQLIGSIPLSFGNLSRLTLMSLFNNLLSGSLPPILGNLKSLSALGLHINQLSGV 318
+ +L++ Q+ G++P+ L + L +N L SLP + L +L+ L + N+L+ +
Sbjct: 64 RAELTKLQVDGTLPV-------LGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSL 115
Query: 319 IPSSIGNLSSLRALYLYNNGLCGFVPEEIRYLKSLSELELCKNHLSGVIPHSIGNLTGLL 378
++ L L+ LYL N L P + L +L L N+L+ + + L L
Sbjct: 116 PLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLD 175
Query: 379 LLNMCENHLSGPIPKSF 395
L + EN L IPK F
Sbjct: 176 TLLLQENSLYT-IPKGF 191
Score = 30.8 bits (68), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 32/87 (36%), Positives = 46/87 (52%), Gaps = 3/87 (3%)
Query: 468 GDSPKLQVLDLSSNSIVGEIPVQLGKLFSLNKLILNLNQLSGGMPL-ELGSLTELQYLDL 526
G P L LDLS N + +P+ L +L L ++ N+L+ +PL L L ELQ L L
Sbjct: 74 GTLPVLGTLDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLTS-LPLGALRGLGELQELYL 131
Query: 527 SANKLKSSIPKSIGNLLRLRYLDLSNN 553
N+LK+ P + +L L L+NN
Sbjct: 132 KGNELKTLPPGLLTPTPKLEKLSLANN 158
Score = 30.8 bits (68), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 41/134 (30%), Positives = 64/134 (47%), Gaps = 14/134 (10%)
Query: 69 LSSMALNGTLQEFAFSSFPHLVQLNLSFNIFFGIIPPQIG-NLSKLQYLDLGSNQLSGVI 127
L+ + ++GTL P L L+LS N + P +G L L LD+ N+L+ +
Sbjct: 67 LTKLQVDGTL--------PVLGTLDLSHNQLQSL--PLLGQTLPALTVLDVSFNRLTSLP 116
Query: 128 PPEIGHLNQLRILYFDVNQLHGSIPPEIGQLSLINVLALCHNNLYGSIPSSLGN-LSNLA 186
+ L +L+ LY N+L P + + L+L +NNL +P+ L N L NL
Sbjct: 117 LGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNL-TELPAGLLNGLENLD 175
Query: 187 NFYFNNNSLFDSIP 200
NSL+ +IP
Sbjct: 176 TLLLQENSLY-TIP 188
>pdb|1P9A|G Chain G, Crystal Structure Of N-terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-alpha At 1.7 Angstrom
Resolution
pdb|1QYY|A Chain A, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
pdb|1QYY|G Chain G, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
Length = 290
Score = 32.7 bits (73), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 39/137 (28%), Positives = 66/137 (48%), Gaps = 9/137 (6%)
Query: 259 QLDLSENQLIGSIPLSFGNLSRLTLMSLFNNLLSGSLPPILGNLKSLSALGLHINQLSGV 318
+ +L++ Q+ G++P+ L + L +N L SLP + L +L+ L + N+L+ +
Sbjct: 64 RAELTKLQVDGTLPV-------LGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSL 115
Query: 319 IPSSIGNLSSLRALYLYNNGLCGFVPEEIRYLKSLSELELCKNHLSGVIPHSIGNLTGLL 378
++ L L+ LYL N L P + L +L L N+L+ + + L L
Sbjct: 116 PLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLD 175
Query: 379 LLNMCENHLSGPIPKSF 395
L + EN L IPK F
Sbjct: 176 TLLLQENSLYT-IPKGF 191
Score = 30.8 bits (68), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 32/87 (36%), Positives = 46/87 (52%), Gaps = 3/87 (3%)
Query: 468 GDSPKLQVLDLSSNSIVGEIPVQLGKLFSLNKLILNLNQLSGGMPL-ELGSLTELQYLDL 526
G P L LDLS N + +P+ L +L L ++ N+L+ +PL L L ELQ L L
Sbjct: 74 GTLPVLGTLDLSHNQL-QSLPLLGQTLPALTVLDVSFNRLTS-LPLGALRGLGELQELYL 131
Query: 527 SANKLKSSIPKSIGNLLRLRYLDLSNN 553
N+LK+ P + +L L L+NN
Sbjct: 132 KGNELKTLPPGLLTPTPKLEKLSLANN 158
Score = 30.8 bits (68), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 41/134 (30%), Positives = 64/134 (47%), Gaps = 14/134 (10%)
Query: 69 LSSMALNGTLQEFAFSSFPHLVQLNLSFNIFFGIIPPQIG-NLSKLQYLDLGSNQLSGVI 127
L+ + ++GTL P L L+LS N + P +G L L LD+ N+L+ +
Sbjct: 67 LTKLQVDGTL--------PVLGTLDLSHNQLQSL--PLLGQTLPALTVLDVSFNRLTSLP 116
Query: 128 PPEIGHLNQLRILYFDVNQLHGSIPPEIGQLSLINVLALCHNNLYGSIPSSLGN-LSNLA 186
+ L +L+ LY N+L P + + L+L +NNL +P+ L N L NL
Sbjct: 117 LGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNL-TELPAGLLNGLENLD 175
Query: 187 NFYFNNNSLFDSIP 200
NSL+ +IP
Sbjct: 176 TLLLQENSLY-TIP 188
>pdb|3RG1|A Chain A, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|E Chain E, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|I Chain I, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|M Chain M, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|B Chain B, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|F Chain F, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|J Chain J, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|N Chain N, Crystal Structure Of The Rp105MD-1 Complex
Length = 612
Score = 32.3 bits (72), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 31/93 (33%), Positives = 39/93 (41%), Gaps = 1/93 (1%)
Query: 106 QIGNLSKLQYLDLGSNQLSGVIPPEIGHLNQLRILYFDVNQLHGSIPPEIGQ-LSLINVL 164
Q+ NL LQYL+L N+ G+ QL +L LH P Q L L+ VL
Sbjct: 370 QLKNLRHLQYLNLSYNEPLGLEDQAFKECPQLELLDVAFTHLHVKAPHSPFQNLHLLRVL 429
Query: 165 ALCHNNLYGSIPSSLGNLSNLANFYFNNNSLFD 197
L H L S L L +L + NS D
Sbjct: 430 NLSHCLLDTSNQHLLAGLQDLRHLNLQGNSFQD 462
Score = 31.2 bits (69), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 75/297 (25%), Positives = 129/297 (43%), Gaps = 41/297 (13%)
Query: 329 LRALYLYNNGLCG--FVPEEIRYLKSLSELELCKNHLSGV-IPHSI--GNLTGLLLLNMC 383
L+ L+L G+ F+P + L++L L L NH+S + +P + NL L N
Sbjct: 106 LKHLFLTQTGISNLEFIP--VHNLENLESLHLGSNHISSINLPENFPTQNLKVLDFQNNA 163
Query: 384 ENHLSGPIPKSFKNLTSVERVLLNQNNLSG--------KVYEA--FGDHPNL-------- 425
+++S S + T++ + N N++ G K++++ FG NL
Sbjct: 164 IHYISRKDTNSLEQATNLS-LNFNGNDIKGIEPGAFISKIFQSLKFGGSLNLFIIFKGLQ 222
Query: 426 --TFLNLSQNNF--CGEISFNWRNFPKLGTFIVSVNNISGSIPPEIGDS-----PKLQVL 476
T +L F + F L V N+ ++ S ++Q L
Sbjct: 223 NSTLQSLWLGTFEDTDDQYLTSATFEGLCDMSVESINLQKHRFSDLSSSTFRCFTRVQEL 282
Query: 477 DLSSNSIVGEIPVQLGKLFSLNKLILNLNQLSGGMPLELGSLTELQYLDLSANKLKSSI- 535
DL++ + G +P + + SL KL+LN N + S L+ L + N K +
Sbjct: 283 DLTAAHLNG-LPSGIEGMNSLKKLVLNANSFDQLCQINAASFPSLRDLYIKGNMRKLDLG 341
Query: 536 PKSIGNLLRLRYLDLSNN--QFGHKIPIELEKLIHLSELDLSYNF-LG-EEIPFQIC 588
+ + L L+ LDLS++ + ++L+ L HL L+LSYN LG E+ F+ C
Sbjct: 342 TRCLEKLENLQKLDLSHSDIEASDCCNLQLKNLRHLQYLNLSYNEPLGLEDQAFKEC 398
>pdb|1GWB|B Chain B, Structure Of Glycoprotein 1b
pdb|1GWB|A Chain A, Structure Of Glycoprotein 1b
Length = 281
Score = 32.3 bits (72), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 39/137 (28%), Positives = 66/137 (48%), Gaps = 9/137 (6%)
Query: 259 QLDLSENQLIGSIPLSFGNLSRLTLMSLFNNLLSGSLPPILGNLKSLSALGLHINQLSGV 318
+ +L++ Q+ G++P+ L + L +N L SLP + L +L+ L + N+L+ +
Sbjct: 65 RCELTKLQVDGTLPV-------LGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSL 116
Query: 319 IPSSIGNLSSLRALYLYNNGLCGFVPEEIRYLKSLSELELCKNHLSGVIPHSIGNLTGLL 378
++ L L+ LYL N L P + L +L L N+L+ + + L L
Sbjct: 117 PLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLD 176
Query: 379 LLNMCENHLSGPIPKSF 395
L + EN L IPK F
Sbjct: 177 TLLLQENSLYT-IPKGF 192
Score = 31.2 bits (69), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 32/87 (36%), Positives = 46/87 (52%), Gaps = 3/87 (3%)
Query: 468 GDSPKLQVLDLSSNSIVGEIPVQLGKLFSLNKLILNLNQLSGGMPL-ELGSLTELQYLDL 526
G P L LDLS N + +P+ L +L L ++ N+L+ +PL L L ELQ L L
Sbjct: 75 GTLPVLGTLDLSHNQL-QSLPLLGQTLPALTVLDVSFNRLTS-LPLGALRGLGELQELYL 132
Query: 527 SANKLKSSIPKSIGNLLRLRYLDLSNN 553
N+LK+ P + +L L L+NN
Sbjct: 133 KGNELKTLPPGLLTPTPKLEKLSLANN 159
Score = 30.4 bits (67), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 41/134 (30%), Positives = 64/134 (47%), Gaps = 14/134 (10%)
Query: 69 LSSMALNGTLQEFAFSSFPHLVQLNLSFNIFFGIIPPQIG-NLSKLQYLDLGSNQLSGVI 127
L+ + ++GTL P L L+LS N + P +G L L LD+ N+L+ +
Sbjct: 68 LTKLQVDGTL--------PVLGTLDLSHNQLQSL--PLLGQTLPALTVLDVSFNRLTSLP 117
Query: 128 PPEIGHLNQLRILYFDVNQLHGSIPPEIGQLSLINVLALCHNNLYGSIPSSLGN-LSNLA 186
+ L +L+ LY N+L P + + L+L +NNL +P+ L N L NL
Sbjct: 118 LGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNL-TELPAGLLNGLENLD 176
Query: 187 NFYFNNNSLFDSIP 200
NSL+ +IP
Sbjct: 177 TLLLQENSLY-TIP 189
>pdb|1SQ0|B Chain B, Crystal Structure Of The Complex Of The Wild-Type Von
Willebrand Factor A1 Domain And Glycoprotein Ib Alpha At
2.6 Angstrom Resolution
Length = 288
Score = 32.3 bits (72), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 39/137 (28%), Positives = 65/137 (47%), Gaps = 9/137 (6%)
Query: 259 QLDLSENQLIGSIPLSFGNLSRLTLMSLFNNLLSGSLPPILGNLKSLSALGLHINQLSGV 318
+ +L++ Q+ G++P+ L + L +N L SLP + L +L+ L + N+L+ +
Sbjct: 64 RCELTKLQVDGTLPV-------LGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSL 115
Query: 319 IPSSIGNLSSLRALYLYNNGLCGFVPEEIRYLKSLSELELCKNHLSGVIPHSIGNLTGLL 378
++ L L+ LYL N L P + L +L L N L+ + + L L
Sbjct: 116 PLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNDLTELPAGLLNGLENLD 175
Query: 379 LLNMCENHLSGPIPKSF 395
L + EN L IPK F
Sbjct: 176 TLLLQENSLYT-IPKGF 191
Score = 31.2 bits (69), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 32/89 (35%), Positives = 46/89 (51%), Gaps = 3/89 (3%)
Query: 468 GDSPKLQVLDLSSNSIVGEIPVQLGKLFSLNKLILNLNQLSGGMPL-ELGSLTELQYLDL 526
G P L LDLS N + +P+ L +L L ++ N+L+ +PL L L ELQ L L
Sbjct: 74 GTLPVLGTLDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLTS-LPLGALRGLGELQELYL 131
Query: 527 SANKLKSSIPKSIGNLLRLRYLDLSNNQF 555
N+LK+ P + +L L L+NN
Sbjct: 132 KGNELKTLPPGLLTPTPKLEKLSLANNDL 160
Score = 29.6 bits (65), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 40/135 (29%), Positives = 64/135 (47%), Gaps = 14/135 (10%)
Query: 68 NLSSMALNGTLQEFAFSSFPHLVQLNLSFNIFFGIIPPQIG-NLSKLQYLDLGSNQLSGV 126
L+ + ++GTL P L L+LS N + P +G L L LD+ N+L+ +
Sbjct: 66 ELTKLQVDGTL--------PVLGTLDLSHNQLQSL--PLLGQTLPALTVLDVSFNRLTSL 115
Query: 127 IPPEIGHLNQLRILYFDVNQLHGSIPPEIGQLSLINVLALCHNNLYGSIPSSLGN-LSNL 185
+ L +L+ LY N+L P + + L+L +N+L +P+ L N L NL
Sbjct: 116 PLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNDL-TELPAGLLNGLENL 174
Query: 186 ANFYFNNNSLFDSIP 200
NSL+ +IP
Sbjct: 175 DTLLLQENSLY-TIP 188
>pdb|2Z62|A Chain A, Crystal Structure Of The Tv3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z65|A Chain A, Crystal Structure Of The Human Tlr4 Tv3
Hybrid-Md-2-Eritoran Complex
pdb|2Z65|B Chain B, Crystal Structure Of The Human Tlr4 Tv3
Hybrid-Md-2-Eritoran Complex
Length = 276
Score = 32.3 bits (72), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 44/87 (50%), Gaps = 7/87 (8%)
Query: 52 AWLGISCNQAGRVISINLSSMALNGTLQEFAFSSFPHLVQLNLSFNIFFGI-IPPQIGNL 110
A+ G+S Q + NL+S L+ F L +LN++ N+ +P NL
Sbjct: 95 AFSGLSSLQKLVAVETNLAS------LENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNL 148
Query: 111 SKLQYLDLGSNQLSGVIPPEIGHLNQL 137
+ L++LDL SN++ + ++ L+Q+
Sbjct: 149 TNLEHLDLSSNKIQSIYCTDLRVLHQM 175
>pdb|3UL9|A Chain A, Structure Of The Tv3 Mutant M41e
Length = 278
Score = 32.3 bits (72), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 44/87 (50%), Gaps = 7/87 (8%)
Query: 52 AWLGISCNQAGRVISINLSSMALNGTLQEFAFSSFPHLVQLNLSFNIFFGI-IPPQIGNL 110
A+ G+S Q + NL+S L+ F L +LN++ N+ +P NL
Sbjct: 96 AFSGLSSLQKLVAVETNLAS------LENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNL 149
Query: 111 SKLQYLDLGSNQLSGVIPPEIGHLNQL 137
+ L++LDL SN++ + ++ L+Q+
Sbjct: 150 TNLEHLDLSSNKIQSIYCTDLRVLHQM 176
>pdb|1P8V|A Chain A, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Alpha-thrombin At 2.6a
Length = 279
Score = 32.0 bits (71), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 39/137 (28%), Positives = 66/137 (48%), Gaps = 9/137 (6%)
Query: 259 QLDLSENQLIGSIPLSFGNLSRLTLMSLFNNLLSGSLPPILGNLKSLSALGLHINQLSGV 318
+ +L++ Q+ G++P+ L + L +N L SLP + L +L+ L + N+L+ +
Sbjct: 64 RCELTKLQVDGTLPV-------LGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSL 115
Query: 319 IPSSIGNLSSLRALYLYNNGLCGFVPEEIRYLKSLSELELCKNHLSGVIPHSIGNLTGLL 378
++ L L+ LYL N L P + L +L L N+L+ + + L L
Sbjct: 116 PLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLD 175
Query: 379 LLNMCENHLSGPIPKSF 395
L + EN L IPK F
Sbjct: 176 TLLLQENSLYT-IPKGF 191
Score = 30.8 bits (68), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 32/87 (36%), Positives = 46/87 (52%), Gaps = 3/87 (3%)
Query: 468 GDSPKLQVLDLSSNSIVGEIPVQLGKLFSLNKLILNLNQLSGGMPL-ELGSLTELQYLDL 526
G P L LDLS N + +P+ L +L L ++ N+L+ +PL L L ELQ L L
Sbjct: 74 GTLPVLGTLDLSHNQL-QSLPLLGQTLPALTVLDVSFNRLTS-LPLGALRGLGELQELYL 131
Query: 527 SANKLKSSIPKSIGNLLRLRYLDLSNN 553
N+LK+ P + +L L L+NN
Sbjct: 132 KGNELKTLPPGLLTPTPKLEKLSLANN 158
Score = 30.4 bits (67), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 41/134 (30%), Positives = 64/134 (47%), Gaps = 14/134 (10%)
Query: 69 LSSMALNGTLQEFAFSSFPHLVQLNLSFNIFFGIIPPQIG-NLSKLQYLDLGSNQLSGVI 127
L+ + ++GTL P L L+LS N + P +G L L LD+ N+L+ +
Sbjct: 67 LTKLQVDGTL--------PVLGTLDLSHNQLQSL--PLLGQTLPALTVLDVSFNRLTSLP 116
Query: 128 PPEIGHLNQLRILYFDVNQLHGSIPPEIGQLSLINVLALCHNNLYGSIPSSLGN-LSNLA 186
+ L +L+ LY N+L P + + L+L +NNL +P+ L N L NL
Sbjct: 117 LGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNL-TELPAGLLNGLENLD 175
Query: 187 NFYFNNNSLFDSIP 200
NSL+ +IP
Sbjct: 176 TLLLQENSLY-TIP 188
>pdb|3ULA|A Chain A, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran
Complex
pdb|3ULA|C Chain C, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran
Complex
Length = 279
Score = 32.0 bits (71), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 44/87 (50%), Gaps = 7/87 (8%)
Query: 52 AWLGISCNQAGRVISINLSSMALNGTLQEFAFSSFPHLVQLNLSFNIFFGI-IPPQIGNL 110
A+ G+S Q + NL+S L+ F L +LN++ N+ +P NL
Sbjct: 97 AFSGLSSLQKLVAVETNLAS------LENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNL 150
Query: 111 SKLQYLDLGSNQLSGVIPPEIGHLNQL 137
+ L++LDL SN++ + ++ L+Q+
Sbjct: 151 TNLEHLDLSSNKIQSIYCTDLRVLHQM 177
Score = 28.9 bits (63), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 36/129 (27%), Positives = 53/129 (41%), Gaps = 1/129 (0%)
Query: 260 LDLSENQLIGSIPLSFGNLSRLTLMSLFNNLLSGSLPPILGNLKSLSALGLHINQLSGVI 319
LDLS N L SF + L ++ L + +L LS L L N + +
Sbjct: 35 LDLSWNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLA 94
Query: 320 PSSIGNLSSLRALYLYNNGLCGFVPEEIRYLKSLSELELCKNHLSGV-IPHSIGNLTGLL 378
+ LSSL+ L L I +LK+L EL + N + +P NLT L
Sbjct: 95 LGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLE 154
Query: 379 LLNMCENHL 387
L++ N +
Sbjct: 155 HLDLSSNKI 163
>pdb|1LTX|A Chain A, Structure Of Rab Escort Protein-1 In Complex With Rab
Geranylgeranyl Transferase And Isoprenoid
Length = 567
Score = 32.0 bits (71), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 46/187 (24%), Positives = 73/187 (39%), Gaps = 28/187 (14%)
Query: 290 LLSGSLPPILGNLKSLSALGLHINQLSGVIPSSIGNLSSLRALYLYNNGLCGFVPEEIRY 349
LL +L P+L ++L + + L V P L LR+ +L N + ++R
Sbjct: 390 LLMRALDPLLYEKETLQ----YFSTLKAVDPMRAAYLDDLRSKFLLENSVLKMEYADVRV 445
Query: 350 L----KSLS------------ELELCKNHLSGVIPHSIGNLTGLLLLNMCENHLSGPIPK 393
L K L+ L+L N L +P ++ L L +L +N L
Sbjct: 446 LHLAHKDLTVLCHLEQLLLVTHLDLSHNRLRA-LPPALAALRCLEVLQASDNALENV--D 502
Query: 394 SFKNLTSVERVLLNQNNLS-GKVYEAFGDHPNLTFLNLSQNNFCGEISFNWRNFPKLGTF 452
NL ++ +LL N L + P L LNL N+ C E +L
Sbjct: 503 GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQ----ERLAEM 558
Query: 453 IVSVNNI 459
+ SV++I
Sbjct: 559 LPSVSSI 565
>pdb|3UL7|A Chain A, Crystal Structure Of The Tv3 Mutant F63w
Length = 278
Score = 32.0 bits (71), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 44/87 (50%), Gaps = 7/87 (8%)
Query: 52 AWLGISCNQAGRVISINLSSMALNGTLQEFAFSSFPHLVQLNLSFNIFFGI-IPPQIGNL 110
A+ G+S Q + NL+S L+ F L +LN++ N+ +P NL
Sbjct: 96 AFSGLSSLQKLVAVETNLAS------LENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNL 149
Query: 111 SKLQYLDLGSNQLSGVIPPEIGHLNQL 137
+ L++LDL SN++ + ++ L+Q+
Sbjct: 150 TNLEHLDLSSNKIQSIYCTDLRVLHQM 176
Score = 28.9 bits (63), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 36/129 (27%), Positives = 53/129 (41%), Gaps = 1/129 (0%)
Query: 260 LDLSENQLIGSIPLSFGNLSRLTLMSLFNNLLSGSLPPILGNLKSLSALGLHINQLSGVI 319
LDLS N L SF + L ++ L + +L LS L L N + +
Sbjct: 34 LDLSWNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLA 93
Query: 320 PSSIGNLSSLRALYLYNNGLCGFVPEEIRYLKSLSELELCKNHLSGV-IPHSIGNLTGLL 378
+ LSSL+ L L I +LK+L EL + N + +P NLT L
Sbjct: 94 LGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLE 153
Query: 379 LLNMCENHL 387
L++ N +
Sbjct: 154 HLDLSSNKI 162
>pdb|3OJA|B Chain B, Crystal Structure Of Lrim1APL1C COMPLEX
Length = 597
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 51/189 (26%), Positives = 87/189 (46%), Gaps = 15/189 (7%)
Query: 418 AFGDHPNLTFLNLSQNNFCGEISFNWRNFPKLGTFIVSVNNISGSIPPEIGDSPKLQVLD 477
F + P LT L L +N+ + N PKL T +S NN+ + LQ L
Sbjct: 118 VFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQ 177
Query: 478 LSSNSIVGEIPVQLGKLFSLNKLILNLNQLSG-GMPLELGSLTELQYLDLSANKLKSSIP 536
LSSN + V L + SL ++ N LS +P+ ++ EL S N ++ +
Sbjct: 178 LSSNRLTH---VDLSLIPSLFHANVSYNLLSTLAIPI---AVEELDASHNSINVVRGPVN 231
Query: 537 KSIGNLLRLRYLDLSNNQFGHKIPIELEKLIHLSELDLSYNFLGEEIPFQICNVKSLEKL 596
+ +L+L++ +L++ + P L E+DLSYN L + + ++ LE+L
Sbjct: 232 VELT-ILKLQHNNLTDTAWLLNYP-------GLVEVDLSYNELEKIMYHPFVKMQRLERL 283
Query: 597 NLCHNNLLG 605
+ +N L+
Sbjct: 284 YISNNRLVA 292
Score = 31.6 bits (70), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 86/302 (28%), Positives = 129/302 (42%), Gaps = 46/302 (15%)
Query: 319 IPSSIGNLSSLRALYLYNNGLCGFVPEEIR-----YLKSLSELELCKNHLSGVIPHSIGN 373
+P+++ L S R + L N L EEI Y ++ +L + N + + PH N
Sbjct: 66 LPAAL--LDSFRQVELLN--LNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQN 121
Query: 374 LTGLLLLNMCENHLSGPIPKS-FKNLTSVERVLLNQNNLSGKVYEAFGDHPNLTFLNLSQ 432
+ L +L + N LS +P+ F N + + ++ NNL + F +L L LS
Sbjct: 122 VPLLTVLVLERNDLSS-LPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSS 180
Query: 433 NNFCG-EISFNWRNFPKLGTFIVSVNNISG-SIPPEIGDSPKLQVLDLSSNSI-VGEIPV 489
N ++S P L VS N +S +IP + + LD S NSI V PV
Sbjct: 181 NRLTHVDLSL----IPSLFHANVSYNLLSTLAIPIAVEE------LDASHNSINVVRGPV 230
Query: 490 QLGKLFSLNKLILNLNQLSG-GMPLELGSLTELQYLDLSANKLKSSIPKSIGNLLRLRYL 548
+ L L L N L+ L L E +DLS N+L+ + + RL L
Sbjct: 231 NV----ELTILKLQHNNLTDTAWLLNYPGLVE---VDLSYNELEKIMYHPFVKMQRLERL 283
Query: 549 DLSNNQ------FGHKIPIELEKLIHLSELDLSYNFLGEEIPFQICNVKSLEKLNLCHNN 602
+SNN+ +G IP L LDLS+N L + LE L L HN+
Sbjct: 284 YISNNRLVALNLYGQPIPT-------LKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNS 335
Query: 603 LL 604
++
Sbjct: 336 IV 337
>pdb|1DCE|A Chain A, Crystal Structure Of Rab Geranylgeranyltransferase From
Rat Brain
pdb|1DCE|C Chain C, Crystal Structure Of Rab Geranylgeranyltransferase From
Rat Brain
Length = 567
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 46/187 (24%), Positives = 73/187 (39%), Gaps = 28/187 (14%)
Query: 290 LLSGSLPPILGNLKSLSALGLHINQLSGVIPSSIGNLSSLRALYLYNNGLCGFVPEEIRY 349
LL +L P+L ++L + + L V P L LR+ +L N + ++R
Sbjct: 390 LLMRALDPLLYEKETLQ----YFSTLKAVDPMRAAYLDDLRSKFLLENSVLKMEYADVRV 445
Query: 350 L----KSLS------------ELELCKNHLSGVIPHSIGNLTGLLLLNMCENHLSGPIPK 393
L K L+ L+L N L +P ++ L L +L +N L
Sbjct: 446 LHLAHKDLTVLCHLEQLLLVTHLDLSHNRLRA-LPPALAALRCLEVLQASDNALENV--D 502
Query: 394 SFKNLTSVERVLLNQNNLS-GKVYEAFGDHPNLTFLNLSQNNFCGEISFNWRNFPKLGTF 452
NL ++ +LL N L + P L LNL N+ C E +L
Sbjct: 503 GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQ----ERLAEM 558
Query: 453 IVSVNNI 459
+ SV++I
Sbjct: 559 LPSVSSI 565
>pdb|2Z80|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
pdb|2Z80|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 353
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 40/139 (28%), Positives = 64/139 (46%), Gaps = 4/139 (2%)
Query: 292 SGSLPPILGNL-KSLSALGLHINQLSGVIPSSIGNLSSLRALYLYNNGLCGFVPEEIRYL 350
SGSL I L +++ +L L N+++ + S + +L+AL L +NG+ + L
Sbjct: 40 SGSLNSIPSGLTEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSL 99
Query: 351 KSLSELELCKNHLSGVIPHSIGNLTGLLLLNMCENHLSGPIPKS-FKNLTSVERVLLNQN 409
SL L+L N+LS + L+ L LN+ N S F +LT ++ +L
Sbjct: 100 GSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQ--ILRVG 157
Query: 410 NLSGKVYEAFGDHPNLTFL 428
N+ D LTFL
Sbjct: 158 NMDTFTKIQRKDFAGLTFL 176
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 33/128 (25%), Positives = 62/128 (48%), Gaps = 6/128 (4%)
Query: 67 INLSSMAL--NG--TLQEFAFSSFPHLVQLNLSFNIFFGIIPPQIGNLSKLQYLDLGSNQ 122
+NL ++ L NG T++E +FSS L L+LS+N + LS L +L+L N
Sbjct: 76 VNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNP 135
Query: 123 LSGVIPPEI-GHLNQLRILYF-DVNQLHGSIPPEIGQLSLINVLALCHNNLYGSIPSSLG 180
+ + HL +L+IL +++ + L+ + L + ++L P SL
Sbjct: 136 YKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLK 195
Query: 181 NLSNLANF 188
++ N+++
Sbjct: 196 SIQNVSHL 203
>pdb|2Z7X|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 549
Score = 31.6 bits (70), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 33/128 (25%), Positives = 62/128 (48%), Gaps = 6/128 (4%)
Query: 67 INLSSMAL--NG--TLQEFAFSSFPHLVQLNLSFNIFFGIIPPQIGNLSKLQYLDLGSNQ 122
+NL ++ L NG T++E +FSS L L+LS+N + LS L +L+L N
Sbjct: 50 VNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNP 109
Query: 123 LSGVIPPEI-GHLNQLRILYF-DVNQLHGSIPPEIGQLSLINVLALCHNNLYGSIPSSLG 180
+ + HL +L+IL +++ + L+ + L + ++L P SL
Sbjct: 110 YKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLK 169
Query: 181 NLSNLANF 188
++ N+++
Sbjct: 170 SIQNVSHL 177
Score = 30.8 bits (68), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 40/139 (28%), Positives = 64/139 (46%), Gaps = 4/139 (2%)
Query: 292 SGSLPPILGNL-KSLSALGLHINQLSGVIPSSIGNLSSLRALYLYNNGLCGFVPEEIRYL 350
SGSL I L +++ +L L N+++ + S + +L+AL L +NG+ + L
Sbjct: 14 SGSLNSIPSGLTEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSL 73
Query: 351 KSLSELELCKNHLSGVIPHSIGNLTGLLLLNMCENHLSGPIPKS-FKNLTSVERVLLNQN 409
SL L+L N+LS + L+ L LN+ N S F +LT ++ +L
Sbjct: 74 GSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQ--ILRVG 131
Query: 410 NLSGKVYEAFGDHPNLTFL 428
N+ D LTFL
Sbjct: 132 NMDTFTKIQRKDFAGLTFL 150
>pdb|2FT3|A Chain A, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|B Chain B, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|C Chain C, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|D Chain D, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|E Chain E, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|F Chain F, Crystal Structure Of The Biglycan Dimer Core Protein
Length = 332
Score = 31.6 bits (70), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 42/157 (26%), Positives = 65/157 (41%), Gaps = 20/157 (12%)
Query: 46 SKISPCAWLGISCNQAGRVISINLSSMALNGTLQEFAFSSFPHLVQLNLSFNIFFGIIPP 105
S P A+ G+ N + +S L G ++ + L +L+L N I
Sbjct: 162 SGFEPGAFDGLKLNY------LRISEAKLTGIPKDLPET----LNELHLDHNKIQAIELE 211
Query: 106 QIGNLSKLQYLDLGSNQLSGVIPPEIGHLNQLRILYFDVNQLHGSIPPEIGQLSLINVLA 165
+ SKL L LG NQ+ + + L LR L+ D N+L +P + L L+ V+
Sbjct: 212 DLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKL-SRVPAGLPDLKLLQVVY 270
Query: 166 LCHNNLYGS-----IPSSLGNLSNLANFYFNNNSLFD 197
L NN+ P G + Y+N SLF+
Sbjct: 271 LHTNNITKVGVNDFCPVGFG----VKRAYYNGISLFN 303
Score = 30.0 bits (66), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 64/234 (27%), Positives = 96/234 (41%), Gaps = 24/234 (10%)
Query: 260 LDLSENQLIGSIPLSFGNLSRLTLMSLFNNLLSGSLPPILGNLKSLSALGLHINQLSGVI 319
LDL N + F L L + L NN +S L+ L L + N L +
Sbjct: 59 LDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLVEIP 118
Query: 320 PSSIGNL-SSLRALYLYNNGLCGFVPEEIRYLKSLSELELCKNHL--SGVIPHSIGNLTG 376
P NL SSL L +++N + L++++ +E+ N L SG P G G
Sbjct: 119 P----NLPSSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEP---GAFDG 171
Query: 377 LLL--LNMCENHLSGPIPKSFKNLTSVERVLLNQNNLSGKVYEAFGDHPNLTFLNLSQNN 434
L L L + E L+G IPK ++ + L+ N + E + L L L N
Sbjct: 172 LKLNYLRISEAKLTG-IPKDLPE--TLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQ 228
Query: 435 FC----GEISFNWRNFPKLGTFIVSVNNISGSIPPEIGDSPKLQVLDLSSNSIV 484
G +SF P L + N +S +P + D LQV+ L +N+I
Sbjct: 229 IRMIENGSLSF----LPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNIT 277
>pdb|3UL8|A Chain A, Crystal Structure Of The Tv3 Mutant V134l
Length = 279
Score = 31.6 bits (70), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 44/87 (50%), Gaps = 7/87 (8%)
Query: 52 AWLGISCNQAGRVISINLSSMALNGTLQEFAFSSFPHLVQLNLSFNIFFGI-IPPQIGNL 110
A+ G+S Q + NL+S L+ F L +LN++ N+ +P NL
Sbjct: 97 AFSGLSSLQKLVALETNLAS------LENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNL 150
Query: 111 SKLQYLDLGSNQLSGVIPPEIGHLNQL 137
+ L++LDL SN++ + ++ L+Q+
Sbjct: 151 TNLEHLDLSSNKIQSIYCTDLRVLHQM 177
>pdb|2ATC|B Chain B, Crystal And Molecular Structures Of Native And
Ctp-Liganded Aspartate Carbamoyltransferase From
Escherichia Coli
Length = 152
Score = 30.4 bits (67), Expect = 2.9, Method: Composition-based stats.
Identities = 16/48 (33%), Positives = 29/48 (60%), Gaps = 1/48 (2%)
Query: 472 KLQVLDLSSNSIVGEIPVQLG-KLFSLNKLILNLNQLSGGMPLELGSL 518
KLQV ++ +++ IP ++G KL SL KL ++++ G+ L G +
Sbjct: 6 KLQVAEIKRGTVINHIPAEIGFKLLSLFKLTETQDRITIGLNLPSGEM 53
>pdb|1D0B|A Chain A, Internalin B Leucine Rich Repeat Domain
Length = 213
Score = 30.4 bits (67), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 31/61 (50%), Gaps = 4/61 (6%)
Query: 298 ILGNLKSLSALGLHINQLSGVIPSSIGNLSSLRALYLYNNGLCGFVPEEIRYLKSLSELE 357
+L L L L L NQ+S ++P + L+ L+ LYL N + + LK+L LE
Sbjct: 146 VLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDL--RALAGLKNLDVLE 201
Query: 358 L 358
L
Sbjct: 202 L 202
>pdb|1OTN|A Chain A, Calcium-Binding Mutant Of The Internalin B Lrr Domain
Length = 236
Score = 30.0 bits (66), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 31/61 (50%), Gaps = 4/61 (6%)
Query: 298 ILGNLKSLSALGLHINQLSGVIPSSIGNLSSLRALYLYNNGLCGFVPEEIRYLKSLSELE 357
+L L L L L NQ+S ++P + L+ L+ LYL N + + LK+L LE
Sbjct: 169 VLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDL--RALAGLKNLDVLE 224
Query: 358 L 358
L
Sbjct: 225 L 225
>pdb|1OTO|A Chain A, Calcium-Binding Mutant Of The Internalin B Lrr Domain
Length = 236
Score = 30.0 bits (66), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 31/61 (50%), Gaps = 4/61 (6%)
Query: 298 ILGNLKSLSALGLHINQLSGVIPSSIGNLSSLRALYLYNNGLCGFVPEEIRYLKSLSELE 357
+L L L L L NQ+S ++P + L+ L+ LYL N + + LK+L LE
Sbjct: 169 VLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDL--RALAGLKNLDVLE 224
Query: 358 L 358
L
Sbjct: 225 L 225
>pdb|1OTM|A Chain A, Calcium-Binding Mutant Of The Internalin B Lrr Domain
Length = 236
Score = 29.6 bits (65), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 31/61 (50%), Gaps = 4/61 (6%)
Query: 298 ILGNLKSLSALGLHINQLSGVIPSSIGNLSSLRALYLYNNGLCGFVPEEIRYLKSLSELE 357
+L L L L L NQ+S ++P + L+ L+ LYL N + + LK+L LE
Sbjct: 169 VLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDL--RALAGLKNLDVLE 224
Query: 358 L 358
L
Sbjct: 225 L 225
>pdb|2V9S|A Chain A, Second Lrr Domain Of Human Slit2
pdb|2V9S|B Chain B, Second Lrr Domain Of Human Slit2
pdb|2V9S|C Chain C, Second Lrr Domain Of Human Slit2
pdb|2V9S|D Chain D, Second Lrr Domain Of Human Slit2
Length = 220
Score = 29.6 bits (65), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 30/114 (26%), Positives = 53/114 (46%)
Query: 248 PSIIGNLKSLLQLDLSENQLIGSIPLSFGNLSRLTLMSLFNNLLSGSLPPILGNLKSLSA 307
P K L ++DLS NQ+ P +F L L + L+ N ++ + L SL
Sbjct: 49 PGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQL 108
Query: 308 LGLHINQLSGVIPSSIGNLSSLRALYLYNNGLCGFVPEEIRYLKSLSELELCKN 361
L L+ N+++ + + +L +L L LY+N L L+++ + L +N
Sbjct: 109 LLLNANKINXLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQN 162
Score = 28.9 bits (63), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 32/65 (49%), Gaps = 3/65 (4%)
Query: 517 SLTELQYLDLSANKLKSSIPKSIGNLLRLRYLDLSNNQFGHKIPIELEKLIHLSELDLSY 576
++TE++ L N +K P + +LR +DLSNNQ P + L L+ L L
Sbjct: 33 TITEIR---LEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYG 89
Query: 577 NFLGE 581
N + E
Sbjct: 90 NKITE 94
>pdb|2V9T|B Chain B, Complex Between The Second Lrr Domain Of Slit2 And The
First Ig Domain From Robo1
Length = 220
Score = 29.6 bits (65), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 30/114 (26%), Positives = 53/114 (46%)
Query: 248 PSIIGNLKSLLQLDLSENQLIGSIPLSFGNLSRLTLMSLFNNLLSGSLPPILGNLKSLSA 307
P K L ++DLS NQ+ P +F L L + L+ N ++ + L SL
Sbjct: 49 PGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQL 108
Query: 308 LGLHINQLSGVIPSSIGNLSSLRALYLYNNGLCGFVPEEIRYLKSLSELELCKN 361
L L+ N+++ + + +L +L L LY+N L L+++ + L +N
Sbjct: 109 LLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQN 162
Score = 28.9 bits (63), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 32/65 (49%), Gaps = 3/65 (4%)
Query: 517 SLTELQYLDLSANKLKSSIPKSIGNLLRLRYLDLSNNQFGHKIPIELEKLIHLSELDLSY 576
++TE++ L N +K P + +LR +DLSNNQ P + L L+ L L
Sbjct: 33 TITEIR---LEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYG 89
Query: 577 NFLGE 581
N + E
Sbjct: 90 NKITE 94
>pdb|2QG9|B Chain B, Structure Of A Regulatory Subunit Mutant D19a Of Atcase
From E. Coli
pdb|2QG9|D Chain D, Structure Of A Regulatory Subunit Mutant D19a Of Atcase
From E. Coli
Length = 153
Score = 28.9 bits (63), Expect = 9.1, Method: Composition-based stats.
Identities = 17/48 (35%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
Query: 472 KLQVLDLSSNSIVGEIPVQLG-KLFSLNKLILNLNQLSGGMPLELGSL 518
KLQV + +++ IP Q+G KL SL KL +++ G+ L G +
Sbjct: 6 KLQVEAIKRGTVIAHIPAQIGFKLLSLFKLTETDQRITIGLNLPSGEM 53
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.137 0.395
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,848,031
Number of Sequences: 62578
Number of extensions: 686810
Number of successful extensions: 2911
Number of sequences better than 100.0: 111
Number of HSP's better than 100.0 without gapping: 74
Number of HSP's successfully gapped in prelim test: 37
Number of HSP's that attempted gapping in prelim test: 1479
Number of HSP's gapped (non-prelim): 680
length of query: 614
length of database: 14,973,337
effective HSP length: 105
effective length of query: 509
effective length of database: 8,402,647
effective search space: 4276947323
effective search space used: 4276947323
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (25.4 bits)