Query 047332
Match_columns 614
No_of_seqs 406 out of 4133
Neff 10.4
Searched_HMMs 46136
Date Fri Mar 29 10:06:16 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047332.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/047332hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00113 leucine-rich repeat r 100.0 2.3E-70 5.1E-75 626.8 44.4 579 4-602 26-605 (968)
2 PLN00113 leucine-rich repeat r 100.0 3.1E-63 6.7E-68 568.1 37.9 524 86-612 68-592 (968)
3 KOG4194 Membrane glycoprotein 100.0 2.3E-38 5E-43 308.5 6.0 364 210-599 81-447 (873)
4 KOG4194 Membrane glycoprotein 100.0 8.2E-38 1.8E-42 304.7 7.0 387 90-502 55-446 (873)
5 KOG0472 Leucine-rich repeat pr 100.0 1.8E-40 3.9E-45 309.6 -14.4 478 87-580 45-541 (565)
6 KOG0472 Leucine-rich repeat pr 100.0 6.9E-41 1.5E-45 312.4 -18.0 496 63-578 46-562 (565)
7 KOG0618 Serine/threonine phosp 100.0 1.2E-36 2.7E-41 312.0 -6.5 463 112-601 46-510 (1081)
8 KOG0618 Serine/threonine phosp 100.0 6.5E-35 1.4E-39 299.4 -6.4 488 63-577 22-510 (1081)
9 KOG0444 Cytoskeletal regulator 100.0 3.4E-33 7.3E-38 274.5 -5.1 385 133-574 5-393 (1255)
10 KOG0444 Cytoskeletal regulator 100.0 1.1E-32 2.3E-37 271.0 -4.5 386 206-600 6-395 (1255)
11 PLN03210 Resistant to P. syrin 99.9 2.3E-24 5E-29 247.4 28.8 359 61-434 531-904 (1153)
12 PLN03210 Resistant to P. syrin 99.9 1.1E-23 2.3E-28 242.0 29.0 338 250-602 553-904 (1153)
13 KOG4237 Extracellular matrix p 99.9 1E-24 2.2E-29 204.3 -5.0 425 92-553 51-498 (498)
14 KOG4237 Extracellular matrix p 99.9 2.8E-24 6E-29 201.4 -3.4 411 160-601 68-498 (498)
15 PRK15387 E3 ubiquitin-protein 99.8 5.2E-20 1.1E-24 196.4 16.4 265 279-587 201-465 (788)
16 PRK15387 E3 ubiquitin-protein 99.8 2.4E-19 5.1E-24 191.4 18.5 265 258-566 204-468 (788)
17 PRK15370 E3 ubiquitin-protein 99.8 1.5E-18 3.3E-23 186.6 17.7 246 112-388 179-428 (754)
18 cd00116 LRR_RI Leucine-rich re 99.8 3.5E-20 7.7E-25 185.6 -0.3 278 308-603 3-319 (319)
19 PRK15370 E3 ubiquitin-protein 99.7 1.1E-17 2.3E-22 180.0 14.7 247 303-580 178-428 (754)
20 cd00116 LRR_RI Leucine-rich re 99.7 2.6E-19 5.6E-24 179.4 0.7 274 283-579 2-319 (319)
21 KOG0617 Ras suppressor protein 99.7 1.6E-18 3.4E-23 144.4 -5.4 166 82-253 28-194 (264)
22 KOG0617 Ras suppressor protein 99.6 2.7E-17 5.9E-22 137.1 -5.0 163 109-300 31-193 (264)
23 PLN03150 hypothetical protein; 99.6 1.6E-14 3.4E-19 155.3 14.5 147 5-170 370-526 (623)
24 KOG1909 Ran GTPase-activating 99.2 6.6E-13 1.4E-17 124.0 -1.7 247 346-603 25-310 (382)
25 KOG1909 Ran GTPase-activating 99.2 1.4E-12 3.1E-17 121.7 -2.7 233 322-555 25-310 (382)
26 KOG1259 Nischarin, modulator o 99.1 7.8E-12 1.7E-16 114.2 0.8 132 469-606 282-414 (490)
27 PLN03150 hypothetical protein; 99.1 1E-10 2.2E-15 126.0 9.3 106 473-578 420-526 (623)
28 KOG0532 Leucine-rich repeat (L 99.1 1.9E-12 4.1E-17 128.2 -5.5 195 398-602 74-271 (722)
29 COG4886 Leucine-rich repeat (L 99.1 1.1E-10 2.5E-15 120.2 7.1 198 379-585 97-295 (394)
30 KOG0532 Leucine-rich repeat (L 99.1 2.3E-12 5.1E-17 127.5 -6.2 194 375-578 75-271 (722)
31 KOG3207 Beta-tubulin folding c 99.1 2.1E-11 4.6E-16 117.2 0.4 211 372-582 118-341 (505)
32 KOG3207 Beta-tubulin folding c 99.1 2.1E-11 4.7E-16 117.2 0.0 210 348-558 118-341 (505)
33 KOG4658 Apoptotic ATPase [Sign 99.1 1E-10 2.2E-15 128.6 4.8 105 88-193 546-652 (889)
34 PF14580 LRR_9: Leucine-rich r 99.0 7.9E-11 1.7E-15 103.6 2.7 106 446-556 18-126 (175)
35 COG4886 Leucine-rich repeat (L 99.0 3.4E-10 7.5E-15 116.6 7.2 174 135-316 116-290 (394)
36 KOG1259 Nischarin, modulator o 99.0 6E-11 1.3E-15 108.5 1.2 127 280-412 285-412 (490)
37 KOG4658 Apoptotic ATPase [Sign 99.0 3.7E-10 7.9E-15 124.3 5.4 61 131-192 567-627 (889)
38 PF14580 LRR_9: Leucine-rich r 99.0 5.5E-10 1.2E-14 98.3 5.3 129 467-600 15-149 (175)
39 PF13855 LRR_8: Leucine rich r 98.8 3.2E-09 6.8E-14 76.6 2.2 59 544-602 2-60 (61)
40 PF13855 LRR_8: Leucine rich r 98.8 3.5E-09 7.6E-14 76.4 2.2 61 519-579 1-61 (61)
41 KOG0531 Protein phosphatase 1, 98.8 1E-09 2.2E-14 113.2 -1.1 105 86-196 71-175 (414)
42 KOG0531 Protein phosphatase 1, 98.7 1.3E-09 2.7E-14 112.6 -1.5 245 325-583 70-321 (414)
43 PF08263 LRRNT_2: Leucine rich 98.6 4E-08 8.8E-13 64.6 4.3 42 6-59 2-43 (43)
44 KOG1859 Leucine-rich repeat pr 98.5 2.6E-09 5.7E-14 109.1 -7.0 127 471-604 164-292 (1096)
45 KOG2120 SCF ubiquitin ligase, 98.5 3E-09 6.4E-14 97.6 -6.0 176 424-601 186-373 (419)
46 KOG4579 Leucine-rich repeat (L 98.4 2.2E-08 4.7E-13 81.2 -2.5 137 472-612 28-167 (177)
47 KOG2120 SCF ubiquitin ligase, 98.3 7.4E-09 1.6E-13 95.0 -7.6 175 377-553 187-373 (419)
48 COG5238 RNA1 Ran GTPase-activa 98.2 1.2E-07 2.5E-12 86.2 -1.8 89 253-341 212-317 (388)
49 KOG1859 Leucine-rich repeat pr 98.2 4E-08 8.7E-13 100.7 -7.2 105 470-579 186-291 (1096)
50 COG5238 RNA1 Ran GTPase-activa 98.1 1.1E-06 2.4E-11 79.9 1.5 136 469-604 155-316 (388)
51 KOG2982 Uncharacterized conser 98.1 8.6E-07 1.9E-11 81.7 0.6 230 370-599 40-287 (418)
52 KOG2982 Uncharacterized conser 98.0 1.4E-06 3E-11 80.4 1.2 224 352-575 46-287 (418)
53 KOG4579 Leucine-rich repeat (L 97.9 9.9E-07 2.1E-11 71.8 -2.1 116 469-587 51-166 (177)
54 PRK15386 type III secretion pr 97.9 4.9E-05 1.1E-09 75.6 8.7 136 443-601 48-187 (426)
55 KOG1644 U2-associated snRNP A' 97.8 3.3E-05 7.2E-10 67.6 5.5 104 472-577 43-150 (233)
56 PRK15386 type III secretion pr 97.8 7E-05 1.5E-09 74.5 7.6 137 419-578 48-188 (426)
57 PF12799 LRR_4: Leucine Rich r 97.7 2.6E-05 5.6E-10 51.3 2.2 17 563-579 20-36 (44)
58 PF12799 LRR_4: Leucine Rich r 97.7 4.8E-05 1E-09 50.0 3.4 34 137-171 3-36 (44)
59 KOG4341 F-box protein containi 97.6 1.3E-06 2.9E-11 84.4 -6.9 207 373-579 214-438 (483)
60 KOG4341 F-box protein containi 97.6 1.8E-06 3.8E-11 83.5 -6.5 38 493-530 399-437 (483)
61 KOG1644 U2-associated snRNP A' 97.6 0.00012 2.5E-09 64.3 5.0 106 446-553 41-150 (233)
62 PF13306 LRR_5: Leucine rich r 97.5 0.00018 3.9E-09 60.9 6.0 107 80-191 5-111 (129)
63 KOG3665 ZYG-1-like serine/thre 97.5 2.9E-05 6.3E-10 84.0 1.1 197 63-263 61-283 (699)
64 PF13306 LRR_5: Leucine rich r 97.5 0.00053 1.1E-08 58.1 8.3 106 394-504 7-112 (129)
65 KOG3665 ZYG-1-like serine/thre 97.4 0.00011 2.3E-09 79.7 2.9 156 446-603 121-287 (699)
66 KOG2739 Leucine-rich acidic nu 97.2 0.0002 4.4E-09 65.6 2.4 66 515-580 61-129 (260)
67 KOG2739 Leucine-rich acidic nu 97.1 0.00024 5.2E-09 65.2 1.8 62 109-172 41-104 (260)
68 KOG1947 Leucine rich repeat pr 97.0 6.9E-05 1.5E-09 79.7 -2.9 186 374-579 242-439 (482)
69 KOG1947 Leucine rich repeat pr 96.9 6.2E-05 1.3E-09 80.1 -4.6 191 395-605 239-441 (482)
70 KOG2123 Uncharacterized conser 96.7 9.4E-05 2E-09 68.0 -4.1 100 494-597 18-123 (388)
71 KOG2123 Uncharacterized conser 96.4 0.00016 3.4E-09 66.6 -4.7 99 471-573 19-123 (388)
72 KOG4308 LRR-containing protein 94.8 0.00021 4.5E-09 74.0 -11.6 36 377-412 89-128 (478)
73 PF00560 LRR_1: Leucine Rich R 94.3 0.014 3.1E-07 31.7 0.4 12 137-148 2-13 (22)
74 PF00560 LRR_1: Leucine Rich R 94.3 0.012 2.6E-07 32.0 -0.0 10 570-579 3-12 (22)
75 KOG4308 LRR-containing protein 93.3 0.00096 2.1E-08 69.2 -10.2 183 400-582 88-305 (478)
76 KOG3864 Uncharacterized conser 93.2 0.0072 1.6E-07 53.4 -3.3 84 495-578 101-187 (221)
77 KOG3864 Uncharacterized conser 91.2 0.042 9.1E-07 48.7 -1.0 85 471-555 101-188 (221)
78 PF13504 LRR_7: Leucine rich r 90.3 0.16 3.4E-06 25.5 1.0 10 113-122 3-12 (17)
79 KOG0473 Leucine-rich repeat pr 88.2 0.0055 1.2E-07 55.2 -8.8 88 82-172 37-124 (326)
80 smart00369 LRR_TYP Leucine-ric 86.9 0.51 1.1E-05 26.7 1.7 16 567-582 2-17 (26)
81 smart00370 LRR Leucine-rich re 86.9 0.51 1.1E-05 26.7 1.7 16 567-582 2-17 (26)
82 PF13516 LRR_6: Leucine Rich r 86.2 0.14 2.9E-06 28.4 -0.9 12 544-555 3-14 (24)
83 KOG0473 Leucine-rich repeat pr 85.0 0.014 3.1E-07 52.6 -7.9 89 105-196 36-124 (326)
84 smart00369 LRR_TYP Leucine-ric 84.1 0.99 2.2E-05 25.4 2.1 16 543-558 2-17 (26)
85 smart00370 LRR Leucine-rich re 84.1 0.99 2.2E-05 25.4 2.1 16 543-558 2-17 (26)
86 KOG4242 Predicted myosin-I-bin 76.3 15 0.00031 37.6 8.5 108 302-411 164-280 (553)
87 smart00364 LRR_BAC Leucine-ric 67.5 3.9 8.5E-05 23.1 1.4 18 591-609 2-19 (26)
88 smart00365 LRR_SD22 Leucine-ri 61.7 6.6 0.00014 22.3 1.6 14 567-580 2-15 (26)
89 smart00368 LRR_RI Leucine rich 58.3 9.2 0.0002 22.0 1.9 14 111-124 2-15 (28)
90 smart00367 LRR_CC Leucine-rich 51.7 11 0.00023 21.2 1.4 13 590-602 1-13 (26)
91 KOG4242 Predicted myosin-I-bin 49.7 32 0.00068 35.3 5.2 19 399-417 165-183 (553)
92 KOG3763 mRNA export factor TAP 37.6 14 0.0003 38.6 0.7 37 421-457 216-254 (585)
93 KOG3763 mRNA export factor TAP 36.4 19 0.00042 37.6 1.5 65 516-582 215-285 (585)
No 1
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=2.3e-70 Score=626.82 Aligned_cols=579 Identities=36% Similarity=0.570 Sum_probs=530.3
Q ss_pred CchHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccceeeCCCCCEEEEEcCCCCCCcccCcccc
Q 047332 4 DSSKETFALLKWKRSLQNKNISLLSSWTLHPDNASNVPSYSKSKISPCAWLGISCNQAGRVISINLSSMALNGTLQEFAF 83 (614)
Q Consensus 4 ~~~~~~~~l~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~c~w~~~~c~~~~~v~~l~l~~~~l~~~~~~~~~ 83 (614)
..++|++||++||+++.+ |.+.+++|+ . ..+||.|.|+.|+..++|+.|+++++.+.|.++. +|
T Consensus 26 ~~~~~~~~l~~~~~~~~~-~~~~~~~w~--~------------~~~~c~w~gv~c~~~~~v~~L~L~~~~i~~~~~~-~~ 89 (968)
T PLN00113 26 LHAEELELLLSFKSSIND-PLKYLSNWN--S------------SADVCLWQGITCNNSSRVVSIDLSGKNISGKISS-AI 89 (968)
T ss_pred CCHHHHHHHHHHHHhCCC-CcccCCCCC--C------------CCCCCcCcceecCCCCcEEEEEecCCCccccCCh-HH
Confidence 467899999999999975 667788996 3 5689999999999888999999999999999877 89
Q ss_pred cCCCCCcEEECCCCCCCccCccccc-CCCCCCEEeCCCCCCCCCCCcCCCCCCCCCEEEcccccCCCCCCccccCCCCCc
Q 047332 84 SSFPHLVQLNLSFNIFFGIIPPQIG-NLSKLQYLDLGSNQLSGVIPPEIGHLNQLRILYFDVNQLHGSIPPEIGQLSLIN 162 (614)
Q Consensus 84 ~~l~~L~~L~Ls~~~~~~~~~~~l~-~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~ 162 (614)
..+++|++|+|++|.+.+.+|..+. .+++|++|++++|.+++.+|. +.+++|++|++++|.+.+.+|..++++++|+
T Consensus 90 ~~l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~--~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~ 167 (968)
T PLN00113 90 FRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPR--GSIPNLETLDLSNNMLSGEIPNDIGSFSSLK 167 (968)
T ss_pred hCCCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCccccccCc--cccCCCCEEECcCCcccccCChHHhcCCCCC
Confidence 9999999999999999988887654 999999999999999988875 5689999999999999999999999999999
Q ss_pred EEEeccccCCCCCCcccCCCCCCcEEEeecCCCcccCCccccCCCCCCeeeccCccCCccCCccccCCCCCCeEEcccCc
Q 047332 163 VLALCHNNLYGSIPSSLGNLSNLANFYFNNNSLFDSIPLVLGNLNSLSTMDLSQNQFSGSIPLSLGNLSNLGILYLYSNS 242 (614)
Q Consensus 163 ~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~ 242 (614)
+|++++|.+.+.+|..++++++|++|++++|.+.+.+|..++++++|+.|++++|.+.+..|..+..+++|++|++++|.
T Consensus 168 ~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~ 247 (968)
T PLN00113 168 VLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNN 247 (968)
T ss_pred EEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCce
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccchhccCCCCCCEEeccCCcCccccCccccCCCCCCEEecCCCcccccCCccCCCCCCCCEeecCCCcccccCCcc
Q 047332 243 FSGSIPSIIGNLKSLLQLDLSENQLIGSIPLSFGNLSRLTLMSLFNNLLSGSLPPILGNLKSLSALGLHINQLSGVIPSS 322 (614)
Q Consensus 243 ~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~ 322 (614)
+.+.+|..+.++++|++|++++|.+.+..|..+..+++|++|++++|.+.+.+|..+..+++|+.|++++|.+.+..|..
T Consensus 248 l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~ 327 (968)
T PLN00113 248 LTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVA 327 (968)
T ss_pred eccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCChh
Confidence 99999999999999999999999999899999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCCEEEccCCcccccCcccccCCCCCcEEEcccccCCccCCccccCCCCCCEEECcCCCCCCCCCccccCCCCCc
Q 047332 323 IGNLSSLRALYLYNNGLCGFVPEEIRYLKSLSELELCKNHLSGVIPHSIGNLTGLLLLNMCENHLSGPIPKSFKNLTSVE 402 (614)
Q Consensus 323 l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~L~ 402 (614)
+..+++|+.|++++|.+.+.+|..+..+++|+.|++++|.+++..|..++.+++|+.+++++|.+.+.+|..+..+++|+
T Consensus 328 ~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~ 407 (968)
T PLN00113 328 LTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLR 407 (968)
T ss_pred HhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHhCCCCCC
Confidence 99999999999999999999999999999999999999999989999999999999999999999999999999999999
Q ss_pred EEEccCCcCCcccccccCCCCCCCEEECcCcccccccCccccCCCCCcEEEcccCcccccCCccCCCCCCCCEEeCCCCc
Q 047332 403 RVLLNQNNLSGKVYEAFGDHPNLTFLNLSQNNFCGEISFNWRNFPKLGTFIVSVNNISGSIPPEIGDSPKLQVLDLSSNS 482 (614)
Q Consensus 403 ~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 482 (614)
.|++++|.+++..+..+..++.|+.|++++|.+.+.++..+..+++|+.|++++|++.+.+|..+ ..++|+.|++++|+
T Consensus 408 ~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~-~~~~L~~L~ls~n~ 486 (968)
T PLN00113 408 RVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSF-GSKRLENLDLSRNQ 486 (968)
T ss_pred EEECcCCEeeeECChhHhcCCCCCEEECcCCcccCccChhhccCCCCcEEECcCceeeeecCccc-ccccceEEECcCCc
Confidence 99999999998888889999999999999999998888888889999999999999988887755 45789999999999
Q ss_pred CccccchhccCCCCCCEeeccCCccccCccccccCCCCCCEEeCCCCcCcccCCccccccCCCCEEeCCCCcCCcCCChh
Q 047332 483 IVGEIPVQLGKLFSLNKLILNLNQLSGGMPLELGSLTELQYLDLSANKLKSSIPKSIGNLLRLRYLDLSNNQFGHKIPIE 562 (614)
Q Consensus 483 ~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~ 562 (614)
+.+..|..+..+++|++|++++|.+.+.+|..+..+++|++|++++|.+++.+|..+..+++|+.|++++|++++.+|..
T Consensus 487 l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~ 566 (968)
T PLN00113 487 FSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKN 566 (968)
T ss_pred cCCccChhhhhhhccCEEECcCCcceeeCChHHcCccCCCEEECCCCcccccCChhHhCcccCCEEECCCCcccccCChh
Confidence 98888888888999999999999998888888889999999999999999889999999999999999999999899988
Q ss_pred hhcCCCCCeeeCCCCCCCCCCCccccCCCCCCeEECcCCC
Q 047332 563 LEKLIHLSELDLSYNFLGEEIPFQICNVKSLEKLNLCHNN 602 (614)
Q Consensus 563 l~~l~~L~~L~L~~n~~~~~~p~~l~~l~sL~~L~l~~n~ 602 (614)
+.++++|+.|++++|++.+.+|.. ..+..+....+.+|+
T Consensus 567 l~~l~~L~~l~ls~N~l~~~~p~~-~~~~~~~~~~~~~n~ 605 (968)
T PLN00113 567 LGNVESLVQVNISHNHLHGSLPST-GAFLAINASAVAGNI 605 (968)
T ss_pred HhcCcccCEEeccCCcceeeCCCc-chhcccChhhhcCCc
Confidence 989999999999999998888864 444555666667776
No 2
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=3.1e-63 Score=568.10 Aligned_cols=524 Identities=38% Similarity=0.571 Sum_probs=499.9
Q ss_pred CCCCcEEECCCCCCCccCcccccCCCCCCEEeCCCCCCCCCCCcCCC-CCCCCCEEEcccccCCCCCCccccCCCCCcEE
Q 047332 86 FPHLVQLNLSFNIFFGIIPPQIGNLSKLQYLDLGSNQLSGVIPPEIG-HLNQLRILYFDVNQLHGSIPPEIGQLSLINVL 164 (614)
Q Consensus 86 l~~L~~L~Ls~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~-~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L 164 (614)
..+++.|+|+++.+++.++.+|..+++|++|++++|.+++.+|..+. .+++|++|++++|.+++.+|. +.+++|++|
T Consensus 68 ~~~v~~L~L~~~~i~~~~~~~~~~l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~--~~l~~L~~L 145 (968)
T PLN00113 68 SSRVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPR--GSIPNLETL 145 (968)
T ss_pred CCcEEEEEecCCCccccCChHHhCCCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCccccccCc--cccCCCCEE
Confidence 35789999999999999999999999999999999999988887765 899999999999999988775 568999999
Q ss_pred EeccccCCCCCCcccCCCCCCcEEEeecCCCcccCCccccCCCCCCeeeccCccCCccCCccccCCCCCCeEEcccCccc
Q 047332 165 ALCHNNLYGSIPSSLGNLSNLANFYFNNNSLFDSIPLVLGNLNSLSTMDLSQNQFSGSIPLSLGNLSNLGILYLYSNSFS 244 (614)
Q Consensus 165 ~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~ 244 (614)
++++|.+++.+|..++.+++|++|++++|.+.+.+|..++++++|++|++++|.+.+..|..+..+++|++|++++|.+.
T Consensus 146 ~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~ 225 (968)
T PLN00113 146 DLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLS 225 (968)
T ss_pred ECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccchhccCCCCCCEEeccCCcCccccCccccCCCCCCEEecCCCcccccCCccCCCCCCCCEeecCCCcccccCCcccc
Q 047332 245 GSIPSIIGNLKSLLQLDLSENQLIGSIPLSFGNLSRLTLMSLFNNLLSGSLPPILGNLKSLSALGLHINQLSGVIPSSIG 324 (614)
Q Consensus 245 ~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~ 324 (614)
+.+|..++.+++|++|++++|.+.+..|..+..+++|++|++++|.+.+.+|..+..+++|++|++++|.+.+.+|..+.
T Consensus 226 ~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~ 305 (968)
T PLN00113 226 GEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVI 305 (968)
T ss_pred CcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCEEEccCCcccccCcccccCCCCCcEEEcccccCCccCCccccCCCCCCEEECcCCCCCCCCCccccCCCCCcEE
Q 047332 325 NLSSLRALYLYNNGLCGFVPEEIRYLKSLSELELCKNHLSGVIPHSIGNLTGLLLLNMCENHLSGPIPKSFKNLTSVERV 404 (614)
Q Consensus 325 ~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L 404 (614)
.+++|+.|++++|.+.+..|..+..+++|+.|++++|.+++.+|..+..+++|+.|++++|.+++.+|..+..+++|+.|
T Consensus 306 ~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L 385 (968)
T PLN00113 306 QLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKL 385 (968)
T ss_pred CCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhHhCcCCCCEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EccCCcCCcccccccCCCCCCCEEECcCcccccccCccccCCCCCcEEEcccCcccccCCccCCCCCCCCEEeCCCCcCc
Q 047332 405 LLNQNNLSGKVYEAFGDHPNLTFLNLSQNNFCGEISFNWRNFPKLGTFIVSVNNISGSIPPEIGDSPKLQVLDLSSNSIV 484 (614)
Q Consensus 405 ~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 484 (614)
++++|.+.+..+..+..+++|+.|++++|.+.+..|..+..+++|+.|++++|.+++.++..+..+++|+.|++++|.+.
T Consensus 386 ~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~ 465 (968)
T PLN00113 386 ILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFF 465 (968)
T ss_pred ECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCcccCccChhhccCCCCcEEECcCceee
Confidence 99999999999999999999999999999999999999999999999999999999999988889999999999999999
Q ss_pred cccchhccCCCCCCEeeccCCccccCccccccCCCCCCEEeCCCCcCcccCCccccccCCCCEEeCCCCcCCcCCChhhh
Q 047332 485 GEIPVQLGKLFSLNKLILNLNQLSGGMPLELGSLTELQYLDLSANKLKSSIPKSIGNLLRLRYLDLSNNQFGHKIPIELE 564 (614)
Q Consensus 485 ~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~l~ 564 (614)
+.+|..+ ...+|+.|++++|++.+..|..+..+++|+.|++++|.+.+.+|+.+..+++|++|++++|.+++.+|..+.
T Consensus 466 ~~~p~~~-~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~ 544 (968)
T PLN00113 466 GGLPDSF-GSKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFS 544 (968)
T ss_pred eecCccc-ccccceEEECcCCccCCccChhhhhhhccCEEECcCCcceeeCChHHcCccCCCEEECCCCcccccCChhHh
Confidence 8888765 468999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCeeeCCCCCCCCCCCccccCCCCCCeEECcCCCCcccCCCCCC
Q 047332 565 KLIHLSELDLSYNFLGEEIPFQICNVKSLEKLNLCHNNLLGSFQQKKD 612 (614)
Q Consensus 565 ~l~~L~~L~L~~n~~~~~~p~~l~~l~sL~~L~l~~n~l~~~ip~~~~ 612 (614)
++++|+.|+|++|++.+.+|..+..+++|++|++++|+++|+||+.++
T Consensus 545 ~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~~p~~~~ 592 (968)
T PLN00113 545 EMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLPSTGA 592 (968)
T ss_pred CcccCCEEECCCCcccccCChhHhcCcccCEEeccCCcceeeCCCcch
Confidence 999999999999999999999999999999999999999999997643
No 3
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=100.00 E-value=2.3e-38 Score=308.51 Aligned_cols=364 Identities=26% Similarity=0.245 Sum_probs=195.0
Q ss_pred CeeeccCccCCccCCccccCCCCCCeEEcccCccccccchhccCCCCCCEEeccCCcCccccCccccCCCCCCEEecCCC
Q 047332 210 STMDLSQNQFSGSIPLSLGNLSNLGILYLYSNSFSGSIPSIIGNLKSLLQLDLSENQLIGSIPLSFGNLSRLTLMSLFNN 289 (614)
Q Consensus 210 ~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~~ 289 (614)
++|++++|++....+..|.++++|+++++..|.++ .+|.......+|+.|+|.+|.+.....+.+..++.|+.|||+.|
T Consensus 81 ~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt-~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrslDLSrN 159 (873)
T KOG4194|consen 81 QTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELT-RIPRFGHESGHLEKLDLRHNLISSVTSEELSALPALRSLDLSRN 159 (873)
T ss_pred eeeeccccccccCcHHHHhcCCcceeeeeccchhh-hcccccccccceeEEeeeccccccccHHHHHhHhhhhhhhhhhc
Confidence 34555555555555555555555555555555554 44543333344555555555555444444555555555555555
Q ss_pred cccccCCccCCCCCCCCEeecCCCcccccCCccccCCCCCCEEEccCCcccccCcccccCCCCCcEEEcccccCCccCCc
Q 047332 290 LLSGSLPPILGNLKSLSALGLHINQLSGVIPSSIGNLSSLRALYLYNNGLCGFVPEEIRYLKSLSELELCKNHLSGVIPH 369 (614)
Q Consensus 290 ~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~ 369 (614)
.|+..-...|..-.++++|+|++|.|+..-...|..+.+|..|.|++|+++...+..|..++.|+.|+|
T Consensus 160 ~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdL----------- 228 (873)
T KOG4194|consen 160 LISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDL----------- 228 (873)
T ss_pred hhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhc-----------
Confidence 554333333444444555555555554444444444445555555555554444444444444444444
Q ss_pred cccCCCCCCEEECcCCCCCCCCCccccCCCCCcEEEccCCcCCcccccccCCCCCCCEEECcCcccccccCccccCCCCC
Q 047332 370 SIGNLTGLLLLNMCENHLSGPIPKSFKNLTSVERVLLNQNNLSGKVYEAFGDHPNLTFLNLSQNNFCGEISFNWRNFPKL 449 (614)
Q Consensus 370 ~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L 449 (614)
..|.+.-.-...|.++++|+.|.+..|.+......+|.++..+++|++..|++...-..++-++++|
T Consensus 229 -------------nrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L 295 (873)
T KOG4194|consen 229 -------------NRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSL 295 (873)
T ss_pred -------------cccceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccchh
Confidence 4444432223344555555555555555554444445555555555555555544444444445555
Q ss_pred cEEEcccCcccccCCccCCCCCCCCEEeCCCCcCccccchhccCCCCCCEeeccCCccccCccccccCCCCCCEEeCCCC
Q 047332 450 GTFIVSVNNISGSIPPEIGDSPKLQVLDLSSNSIVGEIPVQLGKLFSLNKLILNLNQLSGGMPLELGSLTELQYLDLSAN 529 (614)
Q Consensus 450 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~ls~n 529 (614)
+.|+++.|.+...-++.+..+++|++|++++|+++...+..|..++.|++|+|++|++......+|.++++|++|||++|
T Consensus 296 ~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N 375 (873)
T KOG4194|consen 296 EQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSN 375 (873)
T ss_pred hhhccchhhhheeecchhhhcccceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCC
Confidence 55555555555444455555666666666666666555555666666666666666666555555666666666666666
Q ss_pred cCcccCCc---cccccCCCCEEeCCCCcCCcCCChhhhcCCCCCeeeCCCCCCCCCCCccccCCCCCCeEECc
Q 047332 530 KLKSSIPK---SIGNLLRLRYLDLSNNQFGHKIPIELEKLIHLSELDLSYNFLGEEIPFQICNVKSLEKLNLC 599 (614)
Q Consensus 530 ~l~~~~~~---~l~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~sL~~L~l~ 599 (614)
.++..+.+ .|..+++|++|.+.+|++....-.+|.++..||+|||.+|.|...-|..|..+ .|++|.+.
T Consensus 376 ~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m-~Lk~Lv~n 447 (873)
T KOG4194|consen 376 ELSWCIEDAAVAFNGLPSLRKLRLTGNQLKSIPKRAFSGLEALEHLDLGDNAIASIQPNAFEPM-ELKELVMN 447 (873)
T ss_pred eEEEEEecchhhhccchhhhheeecCceeeecchhhhccCcccceecCCCCcceeecccccccc-hhhhhhhc
Confidence 66554443 24556666666666666644333566666666666666666666656666555 55555443
No 4
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=100.00 E-value=8.2e-38 Score=304.70 Aligned_cols=387 Identities=24% Similarity=0.235 Sum_probs=206.1
Q ss_pred cEEECCCCCCCccCcccccCC--CCCCEEeCCCCCCCCCCCcCCCCCCCCCEEEcccccCCCCCCccccCCCCCcEEEec
Q 047332 90 VQLNLSFNIFFGIIPPQIGNL--SKLQYLDLGSNQLSGVIPPEIGHLNQLRILYFDVNQLHGSIPPEIGQLSLINVLALC 167 (614)
Q Consensus 90 ~~L~Ls~~~~~~~~~~~l~~l--~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~ 167 (614)
+.|+.++..+.......+..+ +.-+.||+++|.+....+..|.++++|+++++.+|.++ .+|....-..+|+.|+|.
T Consensus 55 ~lldcs~~~lea~~~~~l~g~lp~~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt-~IP~f~~~sghl~~L~L~ 133 (873)
T KOG4194|consen 55 RLLDCSDRELEAIDKSRLKGFLPSQTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELT-RIPRFGHESGHLEKLDLR 133 (873)
T ss_pred eeeecCccccccccccccCCcCccceeeeeccccccccCcHHHHhcCCcceeeeeccchhh-hcccccccccceeEEeee
Confidence 456666666554333333322 22345777777777666666677777777777777665 555555545556666666
Q ss_pred cccCCCCCCcccCCCCCCcEEEeecCCCcccCCccccCCCCCCeeeccCccCCccCCccccCCCCCCeEEcccCcccccc
Q 047332 168 HNNLYGSIPSSLGNLSNLANFYFNNNSLFDSIPLVLGNLNSLSTMDLSQNQFSGSIPLSLGNLSNLGILYLYSNSFSGSI 247 (614)
Q Consensus 168 ~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~ 247 (614)
+|.|+..-.+.+..++.|+.|+++.|.+....... |..-.++++|+|++|.++..-
T Consensus 134 ~N~I~sv~se~L~~l~alrslDLSrN~is~i~~~s------------------------fp~~~ni~~L~La~N~It~l~ 189 (873)
T KOG4194|consen 134 HNLISSVTSEELSALPALRSLDLSRNLISEIPKPS------------------------FPAKVNIKKLNLASNRITTLE 189 (873)
T ss_pred ccccccccHHHHHhHhhhhhhhhhhchhhcccCCC------------------------CCCCCCceEEeeccccccccc
Confidence 66665544444555555555555555544433333 333344455555555444444
Q ss_pred chhccCCCCCCEEeccCCcCccccCccccCCCCCCEEecCCCcccccCCccCCCCCCCCEeecCCCcccccCCccccCCC
Q 047332 248 PSIIGNLKSLLQLDLSENQLIGSIPLSFGNLSRLTLMSLFNNLLSGSLPPILGNLKSLSALGLHINQLSGVIPSSIGNLS 327 (614)
Q Consensus 248 ~~~l~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~~~ 327 (614)
...|..+.+|..|.|+.|.++...+..|.++++|+.|+|..|+|.-.--..|.++++|+.|.+..|++.......|..+.
T Consensus 190 ~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~ 269 (873)
T KOG4194|consen 190 TGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLE 269 (873)
T ss_pred cccccccchheeeecccCcccccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeec
Confidence 44444444555555555555444444444455555555555554322223345555555555555555544444555555
Q ss_pred CCCEEEccCCcccccCcccccCCCCCcEEEcccccCCccCCccccCCCCCCEEECcCCCCCCCCCccccCCCCCcEEEcc
Q 047332 328 SLRALYLYNNGLCGFVPEEIRYLKSLSELELCKNHLSGVIPHSIGNLTGLLLLNMCENHLSGPIPKSFKNLTSVERVLLN 407 (614)
Q Consensus 328 ~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~l~ 407 (614)
++++|+|+.|++......++..++.|+.|++++|.|...-++.+...++|++|+++.|.++...+.+|..+..|++|.++
T Consensus 270 kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs 349 (873)
T KOG4194|consen 270 KMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLS 349 (873)
T ss_pred ccceeecccchhhhhhcccccccchhhhhccchhhhheeecchhhhcccceeEeccccccccCChhHHHHHHHhhhhccc
Confidence 55555555555555444555555555555555555555555555555555555555555555555555555555555555
Q ss_pred CCcCCcccccccCCCCCCCEEECcCcccccccC---ccccCCCCCcEEEcccCcccccCCccCCCCCCCCEEeCCCCcCc
Q 047332 408 QNNLSGKVYEAFGDHPNLTFLNLSQNNFCGEIS---FNWRNFPKLGTFIVSVNNISGSIPPEIGDSPKLQVLDLSSNSIV 484 (614)
Q Consensus 408 ~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~---~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 484 (614)
+|.++.....+|.++.+|+.||+++|.+++.+. ..|.++++|+.|++.+|++......+|.+++.|++||+.+|.+.
T Consensus 350 ~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~~Naia 429 (873)
T KOG4194|consen 350 HNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLKSIPKRAFSGLEALEHLDLGDNAIA 429 (873)
T ss_pred ccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCceeeecchhhhccCcccceecCCCCcce
Confidence 555554444555555555555555555544332 23444555555555555555333345555555555555555555
Q ss_pred cccchhccCCCCCCEeec
Q 047332 485 GEIPVQLGKLFSLNKLIL 502 (614)
Q Consensus 485 ~~~~~~~~~~~~L~~L~l 502 (614)
..-|..|..+ .|++|.+
T Consensus 430 SIq~nAFe~m-~Lk~Lv~ 446 (873)
T KOG4194|consen 430 SIQPNAFEPM-ELKELVM 446 (873)
T ss_pred eecccccccc-hhhhhhh
Confidence 4445555554 4555543
No 5
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=100.00 E-value=1.8e-40 Score=309.59 Aligned_cols=478 Identities=29% Similarity=0.373 Sum_probs=323.6
Q ss_pred CCCcEEECCCCCCCccCcccccCCCCCCEEeCCCCCCCCCCCcCCCCCCCCCEEEcccccCCCCCCccccCCCCCcEEEe
Q 047332 87 PHLVQLNLSFNIFFGIIPPQIGNLSKLQYLDLGSNQLSGVIPPEIGHLNQLRILYFDVNQLHGSIPPEIGQLSLINVLAL 166 (614)
Q Consensus 87 ~~L~~L~Ls~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l 166 (614)
..|+.+++++|.+... .+.+.++..|.+|++++|.++ .+|.+++.+..++.++.++|++. .+|+.++.+.+|+++++
T Consensus 45 v~l~~lils~N~l~~l-~~dl~nL~~l~vl~~~~n~l~-~lp~aig~l~~l~~l~vs~n~ls-~lp~~i~s~~~l~~l~~ 121 (565)
T KOG0472|consen 45 VDLQKLILSHNDLEVL-REDLKNLACLTVLNVHDNKLS-QLPAAIGELEALKSLNVSHNKLS-ELPEQIGSLISLVKLDC 121 (565)
T ss_pred cchhhhhhccCchhhc-cHhhhcccceeEEEeccchhh-hCCHHHHHHHHHHHhhcccchHh-hccHHHhhhhhhhhhhc
Confidence 4578889999987654 445788889999999999988 77888889999999999999887 88889999999999999
Q ss_pred ccccCCCCCCcccCCCCCCcEEEeecCCCcccCCccccCCCCCCeeeccCccCCccCCccccCCCCCCeEEcccCccccc
Q 047332 167 CHNNLYGSIPSSLGNLSNLANFYFNNNSLFDSIPLVLGNLNSLSTMDLSQNQFSGSIPLSLGNLSNLGILYLYSNSFSGS 246 (614)
Q Consensus 167 ~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~ 246 (614)
++|.+. .+|+.++.+-.++.++..+|++.. +|.++.++.++..+++.+|++. ..|+..-+++.|++|+...|.++ .
T Consensus 122 s~n~~~-el~~~i~~~~~l~dl~~~~N~i~s-lp~~~~~~~~l~~l~~~~n~l~-~l~~~~i~m~~L~~ld~~~N~L~-t 197 (565)
T KOG0472|consen 122 SSNELK-ELPDSIGRLLDLEDLDATNNQISS-LPEDMVNLSKLSKLDLEGNKLK-ALPENHIAMKRLKHLDCNSNLLE-T 197 (565)
T ss_pred ccccee-ecCchHHHHhhhhhhhcccccccc-CchHHHHHHHHHHhhccccchh-hCCHHHHHHHHHHhcccchhhhh-c
Confidence 998887 567778888888888888888754 4667777888888888888887 44444444788888888877765 7
Q ss_pred cchhccCCCCCCEEeccCCcCccccCccccCCCCCCEEecCCCcccccCCccCCCCCCCCEeecCCCcccccCCccccCC
Q 047332 247 IPSIIGNLKSLLQLDLSENQLIGSIPLSFGNLSRLTLMSLFNNLLSGSLPPILGNLKSLSALGLHINQLSGVIPSSIGNL 326 (614)
Q Consensus 247 ~~~~l~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~~ 326 (614)
+|..++.+.+|+.|++..|++. .+| .|..|..|+++++..|.+.-...+....++++.+||+.+|+++ +.|..+.-+
T Consensus 198 lP~~lg~l~~L~~LyL~~Nki~-~lP-ef~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdNklk-e~Pde~clL 274 (565)
T KOG0472|consen 198 LPPELGGLESLELLYLRRNKIR-FLP-EFPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDNKLK-EVPDEICLL 274 (565)
T ss_pred CChhhcchhhhHHHHhhhcccc-cCC-CCCccHHHHHHHhcccHHHhhHHHHhcccccceeeeccccccc-cCchHHHHh
Confidence 7888888888888888888876 556 6777888888888888876333333457788888888888887 667777777
Q ss_pred CCCCEEEccCCcccccCcccccCCCCCcEEEcccccCCccCCccccCCC--CCCEE-------ECcCCCC----C----C
Q 047332 327 SSLRALYLYNNGLCGFVPEEIRYLKSLSELELCKNHLSGVIPHSIGNLT--GLLLL-------NMCENHL----S----G 389 (614)
Q Consensus 327 ~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~--~L~~L-------~ls~n~l----~----~ 389 (614)
++|..|++++|.+++ +|..++++ .|+.|-+.+|.+...-.+.+..-+ -|++| .++..+- . .
T Consensus 275 rsL~rLDlSNN~is~-Lp~sLgnl-hL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~~t~~~ 352 (565)
T KOG0472|consen 275 RSLERLDLSNNDISS-LPYSLGNL-HLKFLALEGNPLRTIRREIISKGTQEVLKYLRSKIKDDGLSQSEGGTETAMTLPS 352 (565)
T ss_pred hhhhhhcccCCcccc-CCcccccc-eeeehhhcCCchHHHHHHHHcccHHHHHHHHHHhhccCCCCCCcccccccCCCCC
Confidence 788888888888876 56667777 778888888766421111010000 01111 0111000 0 0
Q ss_pred CCCccccCCCCCcEEEccCCcCCcccccccCCC--CCCCEEECcCcccccccCccccCCCCCcEEEcccCcccccCCccC
Q 047332 390 PIPKSFKNLTSVERVLLNQNNLSGKVYEAFGDH--PNLTFLNLSQNNFCGEISFNWRNFPKLGTFIVSVNNISGSIPPEI 467 (614)
Q Consensus 390 ~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~--~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~ 467 (614)
..........+.+.|++++-+++....+.|..- .-.+..+++.|++. ++|..+..+..+.+..+..++..+.+|..+
T Consensus 353 ~~~~~~~~~i~tkiL~~s~~qlt~VPdEVfea~~~~~Vt~VnfskNqL~-elPk~L~~lkelvT~l~lsnn~isfv~~~l 431 (565)
T KOG0472|consen 353 ESFPDIYAIITTKILDVSDKQLTLVPDEVFEAAKSEIVTSVNFSKNQLC-ELPKRLVELKELVTDLVLSNNKISFVPLEL 431 (565)
T ss_pred CcccchhhhhhhhhhcccccccccCCHHHHHHhhhcceEEEecccchHh-hhhhhhHHHHHHHHHHHhhcCccccchHHH
Confidence 011112234455666666666664444444322 23556677777765 445555555554444444444444566666
Q ss_pred CCCCCCCEEeCCCCcCccccchhccCCCCCCEeeccCCccccCccccccCCCCCCEEeCCCCcCcccCCccccccCCCCE
Q 047332 468 GDSPKLQVLDLSSNSIVGEIPVQLGKLFSLNKLILNLNQLSGGMPLELGSLTELQYLDLSANKLKSSIPKSIGNLLRLRY 547 (614)
Q Consensus 468 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~l~~l~~L~~ 547 (614)
..+++|..|++++|.+. .+|..++.+..|+.|+++.|+|. ..|.++-.+..++.+-.++|++....|+.+.++.+|++
T Consensus 432 ~~l~kLt~L~L~NN~Ln-~LP~e~~~lv~Lq~LnlS~NrFr-~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~t 509 (565)
T KOG0472|consen 432 SQLQKLTFLDLSNNLLN-DLPEEMGSLVRLQTLNLSFNRFR-MLPECLYELQTLETLLASNNQIGSVDPSGLKNMRNLTT 509 (565)
T ss_pred Hhhhcceeeecccchhh-hcchhhhhhhhhheecccccccc-cchHHHhhHHHHHHHHhccccccccChHHhhhhhhcce
Confidence 66777777777776665 66666666666777777777666 56666666666666666667776555555677777777
Q ss_pred EeCCCCcCCcCCChhhhcCCCCCeeeCCCCCCC
Q 047332 548 LDLSNNQFGHKIPIELEKLIHLSELDLSYNFLG 580 (614)
Q Consensus 548 L~l~~n~~~~~~p~~l~~l~~L~~L~L~~n~~~ 580 (614)
||+.+|.+ ..+|..+++|++|++|++++|++.
T Consensus 510 LDL~nNdl-q~IPp~LgnmtnL~hLeL~gNpfr 541 (565)
T KOG0472|consen 510 LDLQNNDL-QQIPPILGNMTNLRHLELDGNPFR 541 (565)
T ss_pred eccCCCch-hhCChhhccccceeEEEecCCccC
Confidence 77777776 456666777777777777777765
No 6
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=100.00 E-value=6.9e-41 Score=312.36 Aligned_cols=496 Identities=28% Similarity=0.370 Sum_probs=388.4
Q ss_pred CEEEEEcCCCCCCcccCcccccCCCCCcEEECCCCCCCccCcccccCCCCCCEEeCCCCCCCCCCCcCCCCCCCCCEEEc
Q 047332 63 RVISINLSSMALNGTLQEFAFSSFPHLVQLNLSFNIFFGIIPPQIGNLSKLQYLDLGSNQLSGVIPPEIGHLNQLRILYF 142 (614)
Q Consensus 63 ~v~~l~l~~~~l~~~~~~~~~~~l~~L~~L~Ls~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~l 142 (614)
....+.++.+.+... .+ .+.++..|.+|++++|++.. .|.+++.+..++.++.++|.++ .+|+.++.+.+|+++++
T Consensus 46 ~l~~lils~N~l~~l-~~-dl~nL~~l~vl~~~~n~l~~-lp~aig~l~~l~~l~vs~n~ls-~lp~~i~s~~~l~~l~~ 121 (565)
T KOG0472|consen 46 DLQKLILSHNDLEVL-RE-DLKNLACLTVLNVHDNKLSQ-LPAAIGELEALKSLNVSHNKLS-ELPEQIGSLISLVKLDC 121 (565)
T ss_pred chhhhhhccCchhhc-cH-hhhcccceeEEEeccchhhh-CCHHHHHHHHHHHhhcccchHh-hccHHHhhhhhhhhhhc
Confidence 345667777776543 33 68899999999999998875 6788999999999999999999 88999999999999999
Q ss_pred ccccCCCCCCccccCCCCCcEEEeccccCCCCCCcccCCCCCCcEEEeecCCCcccCCccccCCCCCCeeeccCccCCcc
Q 047332 143 DVNQLHGSIPPEIGQLSLINVLALCHNNLYGSIPSSLGNLSNLANFYFNNNSLFDSIPLVLGNLNSLSTMDLSQNQFSGS 222 (614)
Q Consensus 143 ~~n~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~ 222 (614)
++|.+. .+|+.++.+-.|+.++..+|+++ ..|+.++.+.++..+++.+|.+....|..+. ++.|+.||...|.+. .
T Consensus 122 s~n~~~-el~~~i~~~~~l~dl~~~~N~i~-slp~~~~~~~~l~~l~~~~n~l~~l~~~~i~-m~~L~~ld~~~N~L~-t 197 (565)
T KOG0472|consen 122 SSNELK-ELPDSIGRLLDLEDLDATNNQIS-SLPEDMVNLSKLSKLDLEGNKLKALPENHIA-MKRLKHLDCNSNLLE-T 197 (565)
T ss_pred ccccee-ecCchHHHHhhhhhhhccccccc-cCchHHHHHHHHHHhhccccchhhCCHHHHH-HHHHHhcccchhhhh-c
Confidence 999988 78889999999999999999988 6678889999999999999998776555444 899999999988887 7
Q ss_pred CCccccCCCCCCeEEcccCccccccchhccCCCCCCEEeccCCcCccccCccc-cCCCCCCEEecCCCcccccCCccCCC
Q 047332 223 IPLSLGNLSNLGILYLYSNSFSGSIPSIIGNLKSLLQLDLSENQLIGSIPLSF-GNLSRLTLMSLFNNLLSGSLPPILGN 301 (614)
Q Consensus 223 ~~~~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~l-~~l~~L~~L~L~~~~~~~~~~~~l~~ 301 (614)
+|..++.+.+|+.|++..|++. .+| .|..+..|+++.++.|++. .+|... .+++++..||+.+|+++ ..|+.+..
T Consensus 198 lP~~lg~l~~L~~LyL~~Nki~-~lP-ef~gcs~L~Elh~g~N~i~-~lpae~~~~L~~l~vLDLRdNklk-e~Pde~cl 273 (565)
T KOG0472|consen 198 LPPELGGLESLELLYLRRNKIR-FLP-EFPGCSLLKELHVGENQIE-MLPAEHLKHLNSLLVLDLRDNKLK-EVPDEICL 273 (565)
T ss_pred CChhhcchhhhHHHHhhhcccc-cCC-CCCccHHHHHHHhcccHHH-hhHHHHhcccccceeeeccccccc-cCchHHHH
Confidence 8999999999999999999987 777 6888999999999999876 555554 48899999999999998 78888888
Q ss_pred CCCCCEeecCCCcccccCCccccCCCCCCEEEccCCcccccCcccccCCC--CCcEEE-------ccccc----CCcc-C
Q 047332 302 LKSLSALGLHINQLSGVIPSSIGNLSSLRALYLYNNGLCGFVPEEIRYLK--SLSELE-------LCKNH----LSGV-I 367 (614)
Q Consensus 302 l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~--~L~~L~-------l~~n~----~~~~-~ 367 (614)
+.+|++||+++|.++ ..|..++++ .|+.|.+.+|.+..+-.+.+..-+ -|++|. ++... -+.. .
T Consensus 274 LrsL~rLDlSNN~is-~Lp~sLgnl-hL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~~t~~ 351 (565)
T KOG0472|consen 274 LRSLERLDLSNNDIS-SLPYSLGNL-HLKFLALEGNPLRTIRREIISKGTQEVLKYLRSKIKDDGLSQSEGGTETAMTLP 351 (565)
T ss_pred hhhhhhhcccCCccc-cCCcccccc-eeeehhhcCCchHHHHHHHHcccHHHHHHHHHHhhccCCCCCCcccccccCCCC
Confidence 999999999999998 677788988 999999999987754322221100 011110 11110 0001 1
Q ss_pred Ccc---ccCCCCCCEEECcCCCCCCCCCccccCC--CCCcEEEccCCcCCcccccccCCCCCCCE-EECcCcccccccCc
Q 047332 368 PHS---IGNLTGLLLLNMCENHLSGPIPKSFKNL--TSVERVLLNQNNLSGKVYEAFGDHPNLTF-LNLSQNNFCGEISF 441 (614)
Q Consensus 368 ~~~---~~~l~~L~~L~ls~n~l~~~~~~~~~~~--~~L~~L~l~~n~~~~~~~~~~~~~~~L~~-L~l~~~~~~~~~~~ 441 (614)
+.. ...+.+.+.|++++-+++......|..- .-.+.++++.|++. +.|..+..+..+.+ +.+++|.+ +.++.
T Consensus 352 ~~~~~~~~~~i~tkiL~~s~~qlt~VPdEVfea~~~~~Vt~VnfskNqL~-elPk~L~~lkelvT~l~lsnn~i-sfv~~ 429 (565)
T KOG0472|consen 352 SESFPDIYAIITTKILDVSDKQLTLVPDEVFEAAKSEIVTSVNFSKNQLC-ELPKRLVELKELVTDLVLSNNKI-SFVPL 429 (565)
T ss_pred CCcccchhhhhhhhhhcccccccccCCHHHHHHhhhcceEEEecccchHh-hhhhhhHHHHHHHHHHHhhcCcc-ccchH
Confidence 111 2235577888888888875444444332 23778999999987 56666655555544 44555554 46777
Q ss_pred cccCCCCCcEEEcccCcccccCCccCCCCCCCCEEeCCCCcCccccchhccCCCCCCEeeccCCccccCccccccCCCCC
Q 047332 442 NWRNFPKLGTFIVSVNNISGSIPPEIGDSPKLQVLDLSSNSIVGEIPVQLGKLFSLNKLILNLNQLSGGMPLELGSLTEL 521 (614)
Q Consensus 442 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L 521 (614)
.+..+++|..|++++|.+. .+|..++.+..|+.|+++.|+|. ..|..+.....++.+-.++|++....+..+.++.+|
T Consensus 430 ~l~~l~kLt~L~L~NN~Ln-~LP~e~~~lv~Lq~LnlS~NrFr-~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL 507 (565)
T KOG0472|consen 430 ELSQLQKLTFLDLSNNLLN-DLPEEMGSLVRLQTLNLSFNRFR-MLPECLYELQTLETLLASNNQIGSVDPSGLKNMRNL 507 (565)
T ss_pred HHHhhhcceeeecccchhh-hcchhhhhhhhhheecccccccc-cchHHHhhHHHHHHHHhccccccccChHHhhhhhhc
Confidence 8888999999999998876 68888888999999999999997 889888888889999889999997777779999999
Q ss_pred CEEeCCCCcCcccCCccccccCCCCEEeCCCCcCCcCCChhhhcCCCCCeeeCCCCC
Q 047332 522 QYLDLSANKLKSSIPKSIGNLLRLRYLDLSNNQFGHKIPIELEKLIHLSELDLSYNF 578 (614)
Q Consensus 522 ~~L~ls~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~L~~n~ 578 (614)
.+||+.+|.+. .+|..+++|++|++|++.+|+|. ..+..+-..+..+.|..-+++
T Consensus 508 ~tLDL~nNdlq-~IPp~LgnmtnL~hLeL~gNpfr-~Pr~~iLmkgT~aiL~ylrdr 562 (565)
T KOG0472|consen 508 TTLDLQNNDLQ-QIPPILGNMTNLRHLELDGNPFR-QPRHQILMKGTAAILSYLRDR 562 (565)
T ss_pred ceeccCCCchh-hCChhhccccceeEEEecCCccC-CCHHHHhccChHHHHHHhccc
Confidence 99999999998 89999999999999999999997 434444333455555444443
No 7
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=100.00 E-value=1.2e-36 Score=311.96 Aligned_cols=463 Identities=30% Similarity=0.335 Sum_probs=274.5
Q ss_pred CCCEEeCCCCCCCCCCCcCCCCCCCCCEEEcccccCCCCCCccccCCCCCcEEEeccccCCCCCCcccCCCCCCcEEEee
Q 047332 112 KLQYLDLGSNQLSGVIPPEIGHLNQLRILYFDVNQLHGSIPPEIGQLSLINVLALCHNNLYGSIPSSLGNLSNLANFYFN 191 (614)
Q Consensus 112 ~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~ 191 (614)
+|+.|++++|.+. ..|..+..+++|+.|+++.|.+. ..|.+..++.+|+++.|.+|.+. ..|..+..+.+|+.|+++
T Consensus 46 ~L~~l~lsnn~~~-~fp~~it~l~~L~~ln~s~n~i~-~vp~s~~~~~~l~~lnL~~n~l~-~lP~~~~~lknl~~LdlS 122 (1081)
T KOG0618|consen 46 KLKSLDLSNNQIS-SFPIQITLLSHLRQLNLSRNYIR-SVPSSCSNMRNLQYLNLKNNRLQ-SLPASISELKNLQYLDLS 122 (1081)
T ss_pred eeEEeeccccccc-cCCchhhhHHHHhhcccchhhHh-hCchhhhhhhcchhheeccchhh-cCchhHHhhhcccccccc
Confidence 3555555555544 44445555555555555555444 44555555555555555555443 445555555555555555
Q ss_pred cCCCcccCCccccCCCCCCeeeccCccCCccCCccccCCCCCCeEEcccCccccccchhccCCCCCCEEeccCCcCcccc
Q 047332 192 NNSLFDSIPLVLGNLNSLSTMDLSQNQFSGSIPLSLGNLSNLGILYLYSNSFSGSIPSIIGNLKSLLQLDLSENQLIGSI 271 (614)
Q Consensus 192 ~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~ 271 (614)
.|.+ +..|..+..+..+..+..++|......+ .. .++.+++..+.+.+.++..+..+++ .|++.+|.+. .
T Consensus 123 ~N~f-~~~Pl~i~~lt~~~~~~~s~N~~~~~lg----~~-~ik~~~l~~n~l~~~~~~~i~~l~~--~ldLr~N~~~-~- 192 (1081)
T KOG0618|consen 123 FNHF-GPIPLVIEVLTAEEELAASNNEKIQRLG----QT-SIKKLDLRLNVLGGSFLIDIYNLTH--QLDLRYNEME-V- 192 (1081)
T ss_pred hhcc-CCCchhHHhhhHHHHHhhhcchhhhhhc----cc-cchhhhhhhhhcccchhcchhhhhe--eeecccchhh-h-
Confidence 5544 2334444445555555555551111111 11 1444555555555444444444433 4555555543 1
Q ss_pred CccccCCCCCCEEecCCCcccccCCccCCCCCCCCEeecCCCcccccCCccccCCCCCCEEEccCCcccccCcccccCCC
Q 047332 272 PLSFGNLSRLTLMSLFNNLLSGSLPPILGNLKSLSALGLHINQLSGVIPSSIGNLSSLRALYLYNNGLCGFVPEEIRYLK 351 (614)
Q Consensus 272 ~~~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~ 351 (614)
..+..+.+|+.+....|.+.... -.-++|+.|+.+.|.++...+. ..-.+|+.++++.|++.+ +|.++..+.
T Consensus 193 -~dls~~~~l~~l~c~rn~ls~l~----~~g~~l~~L~a~~n~l~~~~~~--p~p~nl~~~dis~n~l~~-lp~wi~~~~ 264 (1081)
T KOG0618|consen 193 -LDLSNLANLEVLHCERNQLSELE----ISGPSLTALYADHNPLTTLDVH--PVPLNLQYLDISHNNLSN-LPEWIGACA 264 (1081)
T ss_pred -hhhhhccchhhhhhhhcccceEE----ecCcchheeeeccCcceeeccc--cccccceeeecchhhhhc-chHHHHhcc
Confidence 23444555555555555554221 1225566666666665522221 122456666666666665 346666666
Q ss_pred CCcEEEcccccCCccCCccccCCCCCCEEECcCCCCCCCCCccccCCCCCcEEEccCCcCCcccccccCCCCC-CCEEEC
Q 047332 352 SLSELELCKNHLSGVIPHSIGNLTGLLLLNMCENHLSGPIPKSFKNLTSVERVLLNQNNLSGKVYEAFGDHPN-LTFLNL 430 (614)
Q Consensus 352 ~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~-L~~L~l 430 (614)
+|+.++...|.++ .+|..+...++|+.+.+..|.+. .+|....+.+.|+.|++..|++.......+..... +..++.
T Consensus 265 nle~l~~n~N~l~-~lp~ri~~~~~L~~l~~~~nel~-yip~~le~~~sL~tLdL~~N~L~~lp~~~l~v~~~~l~~ln~ 342 (1081)
T KOG0618|consen 265 NLEALNANHNRLV-ALPLRISRITSLVSLSAAYNELE-YIPPFLEGLKSLRTLDLQSNNLPSLPDNFLAVLNASLNTLNV 342 (1081)
T ss_pred cceEecccchhHH-hhHHHHhhhhhHHHHHhhhhhhh-hCCCcccccceeeeeeehhccccccchHHHhhhhHHHHHHhh
Confidence 6666666666664 45555555666666666666665 34445555666777777766665433333333332 566666
Q ss_pred cCcccccccCccccCCCCCcEEEcccCcccccCCccCCCCCCCCEEeCCCCcCccccchhccCCCCCCEeeccCCccccC
Q 047332 431 SQNNFCGEISFNWRNFPKLGTFIVSVNNISGSIPPEIGDSPKLQVLDLSSNSIVGEIPVQLGKLFSLNKLILNLNQLSGG 510 (614)
Q Consensus 431 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~ 510 (614)
+.+++.......-..++.|+.|++.+|.++....+.+.++++|+.|++++|++.......+.+++.|++|++|+|++. .
T Consensus 343 s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~-~ 421 (1081)
T KOG0618|consen 343 SSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLT-T 421 (1081)
T ss_pred hhccccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccccccCCHHHHhchHHhHHHhcccchhh-h
Confidence 666655333222334677888888888888877777888888899999988887444456778888889999999888 6
Q ss_pred ccccccCCCCCCEEeCCCCcCcccCCccccccCCCCEEeCCCCcCCcC-CChhhhcCCCCCeeeCCCCCCCCCCCccccC
Q 047332 511 MPLELGSLTELQYLDLSANKLKSSIPKSIGNLLRLRYLDLSNNQFGHK-IPIELEKLIHLSELDLSYNFLGEEIPFQICN 589 (614)
Q Consensus 511 ~~~~~~~l~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~-~p~~l~~l~~L~~L~L~~n~~~~~~p~~l~~ 589 (614)
+|..+..|+.|++|....|.+. ..| .+..++.|+.+|++.|+++.. +|+.... ++|++||+++|.-....-..|..
T Consensus 422 Lp~tva~~~~L~tL~ahsN~l~-~fP-e~~~l~qL~~lDlS~N~L~~~~l~~~~p~-p~LkyLdlSGN~~l~~d~~~l~~ 498 (1081)
T KOG0618|consen 422 LPDTVANLGRLHTLRAHSNQLL-SFP-ELAQLPQLKVLDLSCNNLSEVTLPEALPS-PNLKYLDLSGNTRLVFDHKTLKV 498 (1081)
T ss_pred hhHHHHhhhhhHHHhhcCCcee-ech-hhhhcCcceEEecccchhhhhhhhhhCCC-cccceeeccCCcccccchhhhHH
Confidence 7788888888999988888887 566 788888999999999888664 3333332 78899999998743434444555
Q ss_pred CCCCCeEECcCC
Q 047332 590 VKSLEKLNLCHN 601 (614)
Q Consensus 590 l~sL~~L~l~~n 601 (614)
+.++...++.-+
T Consensus 499 l~~l~~~~i~~~ 510 (1081)
T KOG0618|consen 499 LKSLSQMDITLN 510 (1081)
T ss_pred hhhhhheecccC
Confidence 666666666555
No 8
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.97 E-value=6.5e-35 Score=299.39 Aligned_cols=488 Identities=27% Similarity=0.296 Sum_probs=348.9
Q ss_pred CEEEEEcCCCCCCcccCcccccCCCCCcEEECCCCCCCccCcccccCCCCCCEEeCCCCCCCCCCCcCCCCCCCCCEEEc
Q 047332 63 RVISINLSSMALNGTLQEFAFSSFPHLVQLNLSFNIFFGIIPPQIGNLSKLQYLDLGSNQLSGVIPPEIGHLNQLRILYF 142 (614)
Q Consensus 63 ~v~~l~l~~~~l~~~~~~~~~~~l~~L~~L~Ls~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~l 142 (614)
+++.+++..+-+-....+ ...+.-+|+.|++++|.+.. +|..+..+++|+.|+++.|.+. ..|....++.+|+++.|
T Consensus 22 ~~~~ln~~~N~~l~~pl~-~~~~~v~L~~l~lsnn~~~~-fp~~it~l~~L~~ln~s~n~i~-~vp~s~~~~~~l~~lnL 98 (1081)
T KOG0618|consen 22 ALQILNLRRNSLLSRPLE-FVEKRVKLKSLDLSNNQISS-FPIQITLLSHLRQLNLSRNYIR-SVPSSCSNMRNLQYLNL 98 (1081)
T ss_pred HHHhhhccccccccCchH-HhhheeeeEEeecccccccc-CCchhhhHHHHhhcccchhhHh-hCchhhhhhhcchhhee
Confidence 466666666554332222 34445559999999887654 7778888899999999999888 67788888999999999
Q ss_pred ccccCCCCCCccccCCCCCcEEEeccccCCCCCCcccCCCCCCcEEEeecCCCcccCCccccCCCCCCeeeccCccCCcc
Q 047332 143 DVNQLHGSIPPEIGQLSLINVLALCHNNLYGSIPSSLGNLSNLANFYFNNNSLFDSIPLVLGNLNSLSTMDLSQNQFSGS 222 (614)
Q Consensus 143 ~~n~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~ 222 (614)
.+|.+. ..|..+..+++|++|+++.|.+. .+|..+..++.+..+.+++|.....++ ... ++.+++..+.+.+.
T Consensus 99 ~~n~l~-~lP~~~~~lknl~~LdlS~N~f~-~~Pl~i~~lt~~~~~~~s~N~~~~~lg----~~~-ik~~~l~~n~l~~~ 171 (1081)
T KOG0618|consen 99 KNNRLQ-SLPASISELKNLQYLDLSFNHFG-PIPLVIEVLTAEEELAASNNEKIQRLG----QTS-IKKLDLRLNVLGGS 171 (1081)
T ss_pred ccchhh-cCchhHHhhhcccccccchhccC-CCchhHHhhhHHHHHhhhcchhhhhhc----ccc-chhhhhhhhhcccc
Confidence 998877 88899999999999999999887 677778888888888888873322222 222 77778888877777
Q ss_pred CCccccCCCCCCeEEcccCccccccchhccCCCCCCEEeccCCcCccccCccccCCCCCCEEecCCCcccccCCccCCCC
Q 047332 223 IPLSLGNLSNLGILYLYSNSFSGSIPSIIGNLKSLLQLDLSENQLIGSIPLSFGNLSRLTLMSLFNNLLSGSLPPILGNL 302 (614)
Q Consensus 223 ~~~~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~l~~l 302 (614)
++..+..+.+ .|+|.+|.+. . ..+.++++|+.|....|++... --..++|+.|+.+.|.++...+. ..-
T Consensus 172 ~~~~i~~l~~--~ldLr~N~~~-~--~dls~~~~l~~l~c~rn~ls~l----~~~g~~l~~L~a~~n~l~~~~~~--p~p 240 (1081)
T KOG0618|consen 172 FLIDIYNLTH--QLDLRYNEME-V--LDLSNLANLEVLHCERNQLSEL----EISGPSLTALYADHNPLTTLDVH--PVP 240 (1081)
T ss_pred hhcchhhhhe--eeecccchhh-h--hhhhhccchhhhhhhhcccceE----EecCcchheeeeccCcceeeccc--ccc
Confidence 7777766665 6888888765 2 3466777888888777776522 12246777888888877633222 233
Q ss_pred CCCCEeecCCCcccccCCccccCCCCCCEEEccCCcccccCcccccCCCCCcEEEcccccCCccCCccccCCCCCCEEEC
Q 047332 303 KSLSALGLHINQLSGVIPSSIGNLSSLRALYLYNNGLCGFVPEEIRYLKSLSELELCKNHLSGVIPHSIGNLTGLLLLNM 382 (614)
Q Consensus 303 ~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l 382 (614)
.+|++++++.+++. .+|+++..+.+|+.+....|.+. .+|..+...++|+.|....|.+. -+|......+.|++|++
T Consensus 241 ~nl~~~dis~n~l~-~lp~wi~~~~nle~l~~n~N~l~-~lp~ri~~~~~L~~l~~~~nel~-yip~~le~~~sL~tLdL 317 (1081)
T KOG0618|consen 241 LNLQYLDISHNNLS-NLPEWIGACANLEALNANHNRLV-ALPLRISRITSLVSLSAAYNELE-YIPPFLEGLKSLRTLDL 317 (1081)
T ss_pred ccceeeecchhhhh-cchHHHHhcccceEecccchhHH-hhHHHHhhhhhHHHHHhhhhhhh-hCCCcccccceeeeeee
Confidence 57788888888877 45677788888888888888774 46666677778888888888777 45555666778888888
Q ss_pred cCCCCCCCCCccccCCCC-CcEEEccCCcCCcccccccCCCCCCCEEECcCcccccccCccccCCCCCcEEEcccCcccc
Q 047332 383 CENHLSGPIPKSFKNLTS-VERVLLNQNNLSGKVYEAFGDHPNLTFLNLSQNNFCGEISFNWRNFPKLGTFIVSVNNISG 461 (614)
Q Consensus 383 s~n~l~~~~~~~~~~~~~-L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 461 (614)
..|.+.......+..... +..+..+.+++.......=...+.|+.|++.+|.+++.....+.++++|+.|++++|++..
T Consensus 318 ~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~ 397 (1081)
T KOG0618|consen 318 QSNNLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNS 397 (1081)
T ss_pred hhccccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeeccccccc
Confidence 888776444433333332 5666666666653332222345678888888888887777778888888888888888773
Q ss_pred cCCccCCCCCCCCEEeCCCCcCccccchhccCCCCCCEeeccCCccccCccccccCCCCCCEEeCCCCcCcccCCccccc
Q 047332 462 SIPPEIGDSPKLQVLDLSSNSIVGEIPVQLGKLFSLNKLILNLNQLSGGMPLELGSLTELQYLDLSANKLKSSIPKSIGN 541 (614)
Q Consensus 462 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~l~~ 541 (614)
.-...+..++.|++|++++|+++ .+|..+..+..|++|...+|.+. ..| .+..++.|+.+|+|.|+++...-..-..
T Consensus 398 fpas~~~kle~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l~-~fP-e~~~l~qL~~lDlS~N~L~~~~l~~~~p 474 (1081)
T KOG0618|consen 398 FPASKLRKLEELEELNLSGNKLT-TLPDTVANLGRLHTLRAHSNQLL-SFP-ELAQLPQLKVLDLSCNNLSEVTLPEALP 474 (1081)
T ss_pred CCHHHHhchHHhHHHhcccchhh-hhhHHHHhhhhhHHHhhcCCcee-ech-hhhhcCcceEEecccchhhhhhhhhhCC
Confidence 33345667888888888888887 77788888888888888888887 566 6778888889999888887543222223
Q ss_pred cCCCCEEeCCCCcCCcCCChhhhcCCCCCeeeCCCC
Q 047332 542 LLRLRYLDLSNNQFGHKIPIELEKLIHLSELDLSYN 577 (614)
Q Consensus 542 l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~L~~n 577 (614)
.++|+.||+++|.-.......|..+..+...++.-+
T Consensus 475 ~p~LkyLdlSGN~~l~~d~~~l~~l~~l~~~~i~~~ 510 (1081)
T KOG0618|consen 475 SPNLKYLDLSGNTRLVFDHKTLKVLKSLSQMDITLN 510 (1081)
T ss_pred CcccceeeccCCcccccchhhhHHhhhhhheecccC
Confidence 378889999888754444456666666666666666
No 9
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.97 E-value=3.4e-33 Score=274.50 Aligned_cols=385 Identities=28% Similarity=0.377 Sum_probs=226.3
Q ss_pred CCCCCCEEEcccccCC-CCCCccccCCCCCcEEEeccccCCCCCCcccCCCCCCcEEEeecCCCcccCCccccCCCCCCe
Q 047332 133 HLNQLRILYFDVNQLH-GSIPPEIGQLSLINVLALCHNNLYGSIPSSLGNLSNLANFYFNNNSLFDSIPLVLGNLNSLST 211 (614)
Q Consensus 133 ~l~~L~~L~l~~n~~~-~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~ 211 (614)
-++-.+-+|+++|.+. +.+|..+..+++++.|.|....+. .+|+.++.+.+|++|.+++|++.... ..++.++.|+.
T Consensus 5 VLpFVrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~L~-~vPeEL~~lqkLEHLs~~HN~L~~vh-GELs~Lp~LRs 82 (1255)
T KOG0444|consen 5 VLPFVRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTKLE-QVPEELSRLQKLEHLSMAHNQLISVH-GELSDLPRLRS 82 (1255)
T ss_pred ccceeecccccCCcCCCCcCchhHHHhhheeEEEechhhhh-hChHHHHHHhhhhhhhhhhhhhHhhh-hhhccchhhHH
Confidence 4555677888888888 468888888888888888887776 67888888888888888888775432 24566677777
Q ss_pred eeccCccCCc-cCCccccCCCCCCeEEcccCccccccchhccCCCCCCEEeccCCcCccccCccccCCCCCCEEecCCCc
Q 047332 212 MDLSQNQFSG-SIPLSLGNLSNLGILYLYSNSFSGSIPSIIGNLKSLLQLDLSENQLIGSIPLSFGNLSRLTLMSLFNNL 290 (614)
Q Consensus 212 L~l~~~~~~~-~~~~~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~~~ 290 (614)
+.+..|++.. -+|..+.++..|..|+|++|++. +.|..+..-+++-+|+|++|.+..+.-.-|.+++-|-+|+|++|+
T Consensus 83 v~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~-EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~Nr 161 (1255)
T KOG0444|consen 83 VIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLR-EVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNR 161 (1255)
T ss_pred HhhhccccccCCCCchhcccccceeeecchhhhh-hcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccch
Confidence 7777776642 24555555556666666666555 555555555555555555555542222223444445555555555
Q ss_pred ccccCCccCCCCCCCCEeecCCCcccccCCccccCCCCCCEEEccCCcccccCcccccCCCCCcEEEcccccCC-ccCCc
Q 047332 291 LSGSLPPILGNLKSLSALGLHINQLSGVIPSSIGNLSSLRALYLYNNGLCGFVPEEIRYLKSLSELELCKNHLS-GVIPH 369 (614)
Q Consensus 291 ~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~-~~~~~ 369 (614)
+. .+|+.+..+. .|++|.+++|.+.-.--..+..+++|+.|.+++.+-+ ..+|.
T Consensus 162 Le-~LPPQ~RRL~------------------------~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Pt 216 (1255)
T KOG0444|consen 162 LE-MLPPQIRRLS------------------------MLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPT 216 (1255)
T ss_pred hh-hcCHHHHHHh------------------------hhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCC
Confidence 44 3333344444 4444444444433322222333444455555544322 12455
Q ss_pred cccCCCCCCEEECcCCCCCCCCCccccCCCCCcEEEccCCcCCcccccccCCCCCCCEEECcCcccccccCccccCCCCC
Q 047332 370 SIGNLTGLLLLNMCENHLSGPIPKSFKNLTSVERVLLNQNNLSGKVYEAFGDHPNLTFLNLSQNNFCGEISFNWRNFPKL 449 (614)
Q Consensus 370 ~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L 449 (614)
.+..+.+|..+|+|.|.+. .+|.++..+++|+.|++++|+++.. .-....+.+|++|+++.|+++
T Consensus 217 sld~l~NL~dvDlS~N~Lp-~vPecly~l~~LrrLNLS~N~iteL-~~~~~~W~~lEtLNlSrNQLt------------- 281 (1255)
T KOG0444|consen 217 SLDDLHNLRDVDLSENNLP-IVPECLYKLRNLRRLNLSGNKITEL-NMTEGEWENLETLNLSRNQLT------------- 281 (1255)
T ss_pred chhhhhhhhhccccccCCC-cchHHHhhhhhhheeccCcCceeee-eccHHHHhhhhhhccccchhc-------------
Confidence 5555556666666666554 4555666666666666666665522 122233456666666666665
Q ss_pred cEEEcccCcccccCCccCCCCCCCCEEeCCCCcCc-cccchhccCCCCCCEeeccCCccccCccccccCCCCCCEEeCCC
Q 047332 450 GTFIVSVNNISGSIPPEIGDSPKLQVLDLSSNSIV-GEIPVQLGKLFSLNKLILNLNQLSGGMPLELGSLTELQYLDLSA 528 (614)
Q Consensus 450 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~-~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~ls~ 528 (614)
.+|.++..++.|+.|++.+|+++ .-+|+.++++..|+.+..++|.+. ..|+.+.+|..|+.|.++.
T Consensus 282 ------------~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~LE-lVPEglcRC~kL~kL~L~~ 348 (1255)
T KOG0444|consen 282 ------------VLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLE-LVPEGLCRCVKLQKLKLDH 348 (1255)
T ss_pred ------------cchHHHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhccccc-cCchhhhhhHHHHHhcccc
Confidence 34444555555555555555544 235666666666677666666666 6677777777777777777
Q ss_pred CcCcccCCccccccCCCCEEeCCCCcCCcCCChhhhcCCCCCeeeC
Q 047332 529 NKLKSSIPKSIGNLLRLRYLDLSNNQFGHKIPIELEKLIHLSELDL 574 (614)
Q Consensus 529 n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~L 574 (614)
|.+. .+|+.+.-++.|+.||+..|+-.-..|.--..-++|+.-++
T Consensus 349 NrLi-TLPeaIHlL~~l~vLDlreNpnLVMPPKP~da~~~lefYNI 393 (1255)
T KOG0444|consen 349 NRLI-TLPEAIHLLPDLKVLDLRENPNLVMPPKPNDARKKLEFYNI 393 (1255)
T ss_pred ccee-echhhhhhcCCcceeeccCCcCccCCCCcchhhhcceeeec
Confidence 7766 66777777777777777777654444432222234444433
No 10
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.97 E-value=1.1e-32 Score=271.03 Aligned_cols=386 Identities=26% Similarity=0.343 Sum_probs=304.7
Q ss_pred CCCCCeeeccCccCC-ccCCccccCCCCCCeEEcccCccccccchhccCCCCCCEEeccCCcCccccCccccCCCCCCEE
Q 047332 206 LNSLSTMDLSQNQFS-GSIPLSLGNLSNLGILYLYSNSFSGSIPSIIGNLKSLLQLDLSENQLIGSIPLSFGNLSRLTLM 284 (614)
Q Consensus 206 l~~L~~L~l~~~~~~-~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L 284 (614)
++-.+-+|+++|.++ +.+|.....++.++.|.|....+. .+|+.++.+.+|++|.+++|++. .+-..+..++.|+.+
T Consensus 6 LpFVrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~L~-~vPeEL~~lqkLEHLs~~HN~L~-~vhGELs~Lp~LRsv 83 (1255)
T KOG0444|consen 6 LPFVRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTKLE-QVPEELSRLQKLEHLSMAHNQLI-SVHGELSDLPRLRSV 83 (1255)
T ss_pred cceeecccccCCcCCCCcCchhHHHhhheeEEEechhhhh-hChHHHHHHhhhhhhhhhhhhhH-hhhhhhccchhhHHH
Confidence 344566777777777 457777778888888888877776 77888888888888888888876 333456777888888
Q ss_pred ecCCCccc-ccCCccCCCCCCCCEeecCCCcccccCCccccCCCCCCEEEccCCcccccCcccccCCCCCcEEEcccccC
Q 047332 285 SLFNNLLS-GSLPPILGNLKSLSALGLHINQLSGVIPSSIGNLSSLRALYLYNNGLCGFVPEEIRYLKSLSELELCKNHL 363 (614)
Q Consensus 285 ~L~~~~~~-~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~ 363 (614)
.+..|++. ..+|..+..+..|+.|+|+.|+++ +.|..+...+++-.|++++|+|..+....+.+++.|-.|||++|++
T Consensus 84 ~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~-EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~NrL 162 (1255)
T KOG0444|consen 84 IVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLR-EVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNRL 162 (1255)
T ss_pred hhhccccccCCCCchhcccccceeeecchhhhh-hcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccchh
Confidence 88888773 346666778888888888888888 6777788888888888888888877666777888888889998888
Q ss_pred CccCCccccCCCCCCEEECcCCCCCCCCCccccCCCCCcEEEccCCcCC-cccccccCCCCCCCEEECcCcccccccCcc
Q 047332 364 SGVIPHSIGNLTGLLLLNMCENHLSGPIPKSFKNLTSVERVLLNQNNLS-GKVYEAFGDHPNLTFLNLSQNNFCGEISFN 442 (614)
Q Consensus 364 ~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~l~~n~~~-~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~ 442 (614)
. .+|..+..+..|++|++++|.+.-..-..+..+++|+.|.+++.+-+ ..+|..+..+.+|..+|++.|.+. .+|..
T Consensus 163 e-~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp-~vPec 240 (1255)
T KOG0444|consen 163 E-MLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLP-IVPEC 240 (1255)
T ss_pred h-hcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCC-cchHH
Confidence 7 56666788888888999888775443445556777888888876533 456777778889999999998876 66777
Q ss_pred ccCCCCCcEEEcccCcccccCCccCCCCCCCCEEeCCCCcCccccchhccCCCCCCEeeccCCcccc-CccccccCCCCC
Q 047332 443 WRNFPKLGTFIVSVNNISGSIPPEIGDSPKLQVLDLSSNSIVGEIPVQLGKLFSLNKLILNLNQLSG-GMPLELGSLTEL 521 (614)
Q Consensus 443 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~-~~~~~~~~l~~L 521 (614)
+-.+++|+.|++++|+++. +........+|++|+++.|+++ .+|..+.+++.|+.|++.+|++.= -+|..++.+.+|
T Consensus 241 ly~l~~LrrLNLS~N~ite-L~~~~~~W~~lEtLNlSrNQLt-~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~L 318 (1255)
T KOG0444|consen 241 LYKLRNLRRLNLSGNKITE-LNMTEGEWENLETLNLSRNQLT-VLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQL 318 (1255)
T ss_pred HhhhhhhheeccCcCceee-eeccHHHHhhhhhhccccchhc-cchHHHhhhHHHHHHHhccCcccccCCccchhhhhhh
Confidence 7788999999999998873 3334455678999999999998 899999999999999999998762 388899999999
Q ss_pred CEEeCCCCcCcccCCccccccCCCCEEeCCCCcCCcCCChhhhcCCCCCeeeCCCCCCCCCCCccccCCCCCCeEECcC
Q 047332 522 QYLDLSANKLKSSIPKSIGNLLRLRYLDLSNNQFGHKIPIELEKLIHLSELDLSYNFLGEEIPFQICNVKSLEKLNLCH 600 (614)
Q Consensus 522 ~~L~ls~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~sL~~L~l~~ 600 (614)
+.+..++|.+. ..|+++..|..|+.|.|++|++. .+|+++.-++.|+.||+..|+-..-.|.-=..-++|+.-+|..
T Consensus 319 evf~aanN~LE-lVPEglcRC~kL~kL~L~~NrLi-TLPeaIHlL~~l~vLDlreNpnLVMPPKP~da~~~lefYNIDF 395 (1255)
T KOG0444|consen 319 EVFHAANNKLE-LVPEGLCRCVKLQKLKLDHNRLI-TLPEAIHLLPDLKVLDLRENPNLVMPPKPNDARKKLEFYNIDF 395 (1255)
T ss_pred HHHHhhccccc-cCchhhhhhHHHHHhccccccee-echhhhhhcCCcceeeccCCcCccCCCCcchhhhcceeeecce
Confidence 99999999887 89999999999999999999984 5789999999999999999977655553212224566555443
No 11
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.93 E-value=2.3e-24 Score=247.44 Aligned_cols=359 Identities=23% Similarity=0.243 Sum_probs=271.1
Q ss_pred CCCEEEEEcCCCCCCc-ccCcccccCCCCCcEEECCCCC------CCccCcccccCCC-CCCEEeCCCCCCCCCCCcCCC
Q 047332 61 AGRVISINLSSMALNG-TLQEFAFSSFPHLVQLNLSFNI------FFGIIPPQIGNLS-KLQYLDLGSNQLSGVIPPEIG 132 (614)
Q Consensus 61 ~~~v~~l~l~~~~l~~-~~~~~~~~~l~~L~~L~Ls~~~------~~~~~~~~l~~l~-~L~~L~Ls~n~l~~~~~~~l~ 132 (614)
+.+|.+|.+....+.. .+...+|.++++|+.|.+..+. +...+|..|..++ +|+.|++.++.+. .+|..|
T Consensus 531 ~~~v~~i~l~~~~~~~~~i~~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~-~lP~~f- 608 (1153)
T PLN03210 531 TKKVLGITLDIDEIDELHIHENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLR-CMPSNF- 608 (1153)
T ss_pred cceeeEEEeccCccceeeecHHHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCC-CCCCcC-
Confidence 3467777766544432 3455589999999999997653 2334677777775 6999999999887 778777
Q ss_pred CCCCCCEEEcccccCCCCCCccccCCCCCcEEEeccccCCCCCCcccCCCCCCcEEEeecCCCcccCCccccCCCCCCee
Q 047332 133 HLNQLRILYFDVNQLHGSIPPEIGQLSLINVLALCHNNLYGSIPSSLGNLSNLANFYFNNNSLFDSIPLVLGNLNSLSTM 212 (614)
Q Consensus 133 ~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L 212 (614)
...+|++|+++++.+. .+|..+..+++|++|+++++...+.+|. ++.+++|++|++.+|.....+|..++.+++|+.|
T Consensus 609 ~~~~L~~L~L~~s~l~-~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L 686 (1153)
T PLN03210 609 RPENLVKLQMQGSKLE-KLWDGVHSLTGLRNIDLRGSKNLKEIPD-LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDL 686 (1153)
T ss_pred CccCCcEEECcCcccc-ccccccccCCCCCEEECCCCCCcCcCCc-cccCCcccEEEecCCCCccccchhhhccCCCCEE
Confidence 5789999999999987 6788889999999999999876667774 7889999999999998888889999999999999
Q ss_pred eccCccCCccCCccccCCCCCCeEEcccCccccccchhccCCCCCCEEeccCCcCccccCccccCCCCCCEEecCCCccc
Q 047332 213 DLSQNQFSGSIPLSLGNLSNLGILYLYSNSFSGSIPSIIGNLKSLLQLDLSENQLIGSIPLSFGNLSRLTLMSLFNNLLS 292 (614)
Q Consensus 213 ~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~~~~~ 292 (614)
++++|.....+|..+ ++++|++|++++|.....+|.. ..+|+.|++++|.+. .+|..+ .+++|++|.+.++...
T Consensus 687 ~L~~c~~L~~Lp~~i-~l~sL~~L~Lsgc~~L~~~p~~---~~nL~~L~L~~n~i~-~lP~~~-~l~~L~~L~l~~~~~~ 760 (1153)
T PLN03210 687 DMSRCENLEILPTGI-NLKSLYRLNLSGCSRLKSFPDI---STNISWLDLDETAIE-EFPSNL-RLENLDELILCEMKSE 760 (1153)
T ss_pred eCCCCCCcCccCCcC-CCCCCCEEeCCCCCCccccccc---cCCcCeeecCCCccc-cccccc-cccccccccccccchh
Confidence 999987555677655 6889999999998766566643 467899999999875 556544 5788888888774421
Q ss_pred -------ccCCccCCCCCCCCEeecCCCcccccCCccccCCCCCCEEEccCCcccccCcccccCCCCCcEEEcccccCCc
Q 047332 293 -------GSLPPILGNLKSLSALGLHINQLSGVIPSSIGNLSSLRALYLYNNGLCGFVPEEIRYLKSLSELELCKNHLSG 365 (614)
Q Consensus 293 -------~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~ 365 (614)
...+......++|+.|++++|.....+|..++++++|+.|++++|...+.+|..+ .+++|+.|++++|....
T Consensus 761 ~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~ 839 (1153)
T PLN03210 761 KLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLR 839 (1153)
T ss_pred hccccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCccc
Confidence 1111122334678888888887777788888888888888888876555566554 67788888888876544
Q ss_pred cCCccccCCCCCCEEECcCCCCCCCCCccccCCCCCcEEEccCCcCCcccccccCCCCCCCEEECcCcc
Q 047332 366 VIPHSIGNLTGLLLLNMCENHLSGPIPKSFKNLTSVERVLLNQNNLSGKVYEAFGDHPNLTFLNLSQNN 434 (614)
Q Consensus 366 ~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~ 434 (614)
.+|.. ..+|+.|++++|.++ .+|.++..+++|+.|++.+|+-...++.....++.|+.+++++|.
T Consensus 840 ~~p~~---~~nL~~L~Ls~n~i~-~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~ 904 (1153)
T PLN03210 840 TFPDI---STNISDLNLSRTGIE-EVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCG 904 (1153)
T ss_pred ccccc---ccccCEeECCCCCCc-cChHHHhcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCCc
Confidence 44432 357888888888876 467777888888888888765444455566677788888888775
No 12
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.93 E-value=1.1e-23 Score=242.00 Aligned_cols=338 Identities=22% Similarity=0.269 Sum_probs=177.6
Q ss_pred hccCCCCCCEEeccCCcC------ccccCccccCC-CCCCEEecCCCcccccCCccCCCCCCCCEeecCCCcccccCCcc
Q 047332 250 IIGNLKSLLQLDLSENQL------IGSIPLSFGNL-SRLTLMSLFNNLLSGSLPPILGNLKSLSALGLHINQLSGVIPSS 322 (614)
Q Consensus 250 ~l~~l~~L~~L~L~~n~~------~~~~~~~l~~l-~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~ 322 (614)
++..+++|+.|.+..+.. ...+|..+..+ ++|+.|.+.++.+. .+|..+ ...+|++|++.++.+. .++..
T Consensus 553 aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~-~lP~~f-~~~~L~~L~L~~s~l~-~L~~~ 629 (1153)
T PLN03210 553 AFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLR-CMPSNF-RPENLVKLQMQGSKLE-KLWDG 629 (1153)
T ss_pred HHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCC-CCCCcC-CccCCcEEECcCcccc-ccccc
Confidence 345555666655543321 12234444443 24666666665554 444444 3455666666666554 34444
Q ss_pred ccCCCCCCEEEccCCcccccCcccccCCCCCcEEEcccccCCccCCccccCCCCCCEEECcCCCCCCCCCccccCCCCCc
Q 047332 323 IGNLSSLRALYLYNNGLCGFVPEEIRYLKSLSELELCKNHLSGVIPHSIGNLTGLLLLNMCENHLSGPIPKSFKNLTSVE 402 (614)
Q Consensus 323 l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~L~ 402 (614)
+..+++|+.++++++.....+|. +..+++|++|++++|.....+|..+..+++|+.|++++|.....+|..+ ++++|+
T Consensus 630 ~~~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~sL~ 707 (1153)
T PLN03210 630 VHSLTGLRNIDLRGSKNLKEIPD-LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NLKSLY 707 (1153)
T ss_pred cccCCCCCEEECCCCCCcCcCCc-cccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC-CCCCCC
Confidence 45556666666665543333442 4455566666666655444555555666666666666654333444333 455666
Q ss_pred EEEccCCcCCcccccccCCCCCCCEEECcCcccccccCccccCCCCCcEEEcccCccc-------ccCCccCCCCCCCCE
Q 047332 403 RVLLNQNNLSGKVYEAFGDHPNLTFLNLSQNNFCGEISFNWRNFPKLGTFIVSVNNIS-------GSIPPEIGDSPKLQV 475 (614)
Q Consensus 403 ~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~-------~~~~~~~~~~~~L~~ 475 (614)
.|++++|......+.. ..+|++|++++|.+. .+|..+ .+++|+.|.+.++... ...+.....+++|+.
T Consensus 708 ~L~Lsgc~~L~~~p~~---~~nL~~L~L~~n~i~-~lP~~~-~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~ 782 (1153)
T PLN03210 708 RLNLSGCSRLKSFPDI---STNISWLDLDETAIE-EFPSNL-RLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTR 782 (1153)
T ss_pred EEeCCCCCCccccccc---cCCcCeeecCCCccc-cccccc-cccccccccccccchhhccccccccchhhhhccccchh
Confidence 6666665433333221 245566666666543 233222 3455555555443211 001111122355666
Q ss_pred EeCCCCcCccccchhccCCCCCCEeeccCCccccCccccccCCCCCCEEeCCCCcCcccCCccccccCCCCEEeCCCCcC
Q 047332 476 LDLSSNSIVGEIPVQLGKLFSLNKLILNLNQLSGGMPLELGSLTELQYLDLSANKLKSSIPKSIGNLLRLRYLDLSNNQF 555 (614)
Q Consensus 476 L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~l~~n~~ 555 (614)
|++++|...+.+|..++++++|+.|++++|...+.+|..+ .+++|+.|++++|.....+|.. .++|+.|++++|.+
T Consensus 783 L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p~~---~~nL~~L~Ls~n~i 858 (1153)
T PLN03210 783 LFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRTFPDI---STNISDLNLSRTGI 858 (1153)
T ss_pred eeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCcccccccc---ccccCEeECCCCCC
Confidence 6666666555566666666666666666664443455443 4566666666666544344432 24566666666666
Q ss_pred CcCCChhhhcCCCCCeeeCCCCCCCCCCCccccCCCCCCeEECcCCC
Q 047332 556 GHKIPIELEKLIHLSELDLSYNFLGEEIPFQICNVKSLEKLNLCHNN 602 (614)
Q Consensus 556 ~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~sL~~L~l~~n~ 602 (614)
. .+|..+..+++|+.|++++|+-...+|..+..+++|+.+++++|+
T Consensus 859 ~-~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~ 904 (1153)
T PLN03210 859 E-EVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCG 904 (1153)
T ss_pred c-cChHHHhcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCCc
Confidence 3 455666666666666666665555555555566666666666665
No 13
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.87 E-value=1e-24 Score=204.31 Aligned_cols=425 Identities=22% Similarity=0.224 Sum_probs=234.7
Q ss_pred EECCCCCCCccCcccccCCCCCCEEeCCCCCCCCCCCcCCCCCCCCCEEEcccccCCCCCCccccCCCCCcEEEecc-cc
Q 047332 92 LNLSFNIFFGIIPPQIGNLSKLQYLDLGSNQLSGVIPPEIGHLNQLRILYFDVNQLHGSIPPEIGQLSLINVLALCH-NN 170 (614)
Q Consensus 92 L~Ls~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~-~~ 170 (614)
.+-++-.++. +|..+. +.-..++|..|.++...|.+|..+++||.|||++|.++.+-|++|.++++|..|-+.+ |+
T Consensus 51 VdCr~~GL~e-VP~~LP--~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~Nk 127 (498)
T KOG4237|consen 51 VDCRGKGLTE-VPANLP--PETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNK 127 (498)
T ss_pred EEccCCCccc-CcccCC--CcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCc
Confidence 3444444432 444332 3457789999999977778999999999999999999989999999999988877777 88
Q ss_pred CCCCCCcccCCCCCCcEEEeecCCCcccCCccccCCCCCCeeeccCccCCccCCccccCCCCCCeEEcccCccccccchh
Q 047332 171 LYGSIPSSLGNLSNLANFYFNNNSLFDSIPLVLGNLNSLSTMDLSQNQFSGSIPLSLGNLSNLGILYLYSNSFSGSIPSI 250 (614)
Q Consensus 171 l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~ 250 (614)
|+......|+++..|+.|.+.-|++.......|..++++..|.+.+|.+...--..|..+..++.+.+..|.+..
T Consensus 128 I~~l~k~~F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~ic----- 202 (498)
T KOG4237|consen 128 ITDLPKGAFGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFIC----- 202 (498)
T ss_pred hhhhhhhHhhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCcccc-----
Confidence 887766788899999999999888888877888899999999999998874444478888888888888776431
Q ss_pred ccCCCCCCEEeccCCcCccccCccccCCCCCCEEecCCCcccccCCccCCCCCCCCEe---ecCCCcccccCC-ccccCC
Q 047332 251 IGNLKSLLQLDLSENQLIGSIPLSFGNLSRLTLMSLFNNLLSGSLPPILGNLKSLSAL---GLHINQLSGVIP-SSIGNL 326 (614)
Q Consensus 251 l~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L---~L~~n~l~~~~~-~~l~~~ 326 (614)
..+++.+..... ..|..++..+-.....+.+.++....+..+... ++.+ -.+.+...++.| ..|..+
T Consensus 203 dCnL~wla~~~a-------~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~--~esl~s~~~~~d~~d~~cP~~cf~~L 273 (498)
T KOG4237|consen 203 DCNLPWLADDLA-------MNPIETSGARCVSPYRLYYKRINQEDARKFLCS--LESLPSRLSSEDFPDSICPAKCFKKL 273 (498)
T ss_pred ccccchhhhHHh-------hchhhcccceecchHHHHHHHhcccchhhhhhh--HHhHHHhhccccCcCCcChHHHHhhc
Confidence 112222221110 111122222222222333333322211111100 1111 011111121222 134455
Q ss_pred CCCCEEEccCCcccccCcccccCCCCCcEEEcccccCCccCCccccCCCCCCEEECcCCCCCCCCCccccCCCCCcEEEc
Q 047332 327 SSLRALYLYNNGLCGFVPEEIRYLKSLSELELCKNHLSGVIPHSIGNLTGLLLLNMCENHLSGPIPKSFKNLTSVERVLL 406 (614)
Q Consensus 327 ~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~l 406 (614)
++|+.|++++|+++++.+.+|.....+++|.|..|++...-...|.++..|+.|++.+|+++...|..|.....|.+|.+
T Consensus 274 ~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l 353 (498)
T KOG4237|consen 274 PNLRKLNLSNNKITRIEDGAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNL 353 (498)
T ss_pred ccceEeccCCCccchhhhhhhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeeh
Confidence 55555555555555555555555555555555555554443444555555555555555555555555555555555555
Q ss_pred cCCcCCcccc-ccc---------------CCCCCCCEEECcCcccccccCccccCCCCCcEEEcccCccccc--CCccCC
Q 047332 407 NQNNLSGKVY-EAF---------------GDHPNLTFLNLSQNNFCGEISFNWRNFPKLGTFIVSVNNISGS--IPPEIG 468 (614)
Q Consensus 407 ~~n~~~~~~~-~~~---------------~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~--~~~~~~ 468 (614)
-.|.+...-. .|+ +....++.+.+++..+...- +. ++.-.+- .+..-.
T Consensus 354 ~~Np~~CnC~l~wl~~Wlr~~~~~~~~~Cq~p~~~~~~~~~dv~~~~~~------c~--------~~ee~~~~~s~~cP~ 419 (498)
T KOG4237|consen 354 LSNPFNCNCRLAWLGEWLRKKSVVGNPRCQSPGFVRQIPISDVAFGDFR------CG--------GPEELGCLTSSPCPP 419 (498)
T ss_pred ccCcccCccchHHHHHHHhhCCCCCCCCCCCCchhccccchhccccccc------cC--------CccccCCCCCCCCCC
Confidence 5544321110 011 11112333344333221100 00 0000000 001111
Q ss_pred CCCCCCEEeCCCCcCccccchhccCCCCCCEeeccCCccccCccccccCCCCCCEEeCCCCcCcccCCccccccCCCCEE
Q 047332 469 DSPKLQVLDLSSNSIVGEIPVQLGKLFSLNKLILNLNQLSGGMPLELGSLTELQYLDLSANKLKSSIPKSIGNLLRLRYL 548 (614)
Q Consensus 469 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L 548 (614)
.++-+.+..=-.|.....+|..+. ....++++.+|.++ .+|.. .+.+| .+|+++|+++...-..|.++++|.+|
T Consensus 420 ~c~c~~tVvRcSnk~lk~lp~~iP--~d~telyl~gn~~~-~vp~~--~~~~l-~~dls~n~i~~Lsn~tf~n~tql~tl 493 (498)
T KOG4237|consen 420 PCTCLDTVVRCSNKLLKLLPRGIP--VDVTELYLDGNAIT-SVPDE--LLRSL-LLDLSNNRISSLSNYTFSNMTQLSTL 493 (498)
T ss_pred CcchhhhhHhhcccchhhcCCCCC--chhHHHhcccchhc-ccCHH--HHhhh-hcccccCceehhhcccccchhhhhee
Confidence 222233222122222234554332 35677788888887 45544 45667 78888888876656677888888888
Q ss_pred eCCCC
Q 047332 549 DLSNN 553 (614)
Q Consensus 549 ~l~~n 553 (614)
-|+.|
T Consensus 494 ilsyn 498 (498)
T KOG4237|consen 494 ILSYN 498 (498)
T ss_pred EEecC
Confidence 77765
No 14
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.87 E-value=2.8e-24 Score=201.43 Aligned_cols=411 Identities=20% Similarity=0.175 Sum_probs=227.6
Q ss_pred CCcEEEeccccCCCCCCcccCCCCCCcEEEeecCCCcccCCccccCCCCCCeeeccC-ccCCccCCccccCCCCCCeEEc
Q 047332 160 LINVLALCHNNLYGSIPSSLGNLSNLANFYFNNNSLFDSIPLVLGNLNSLSTMDLSQ-NQFSGSIPLSLGNLSNLGILYL 238 (614)
Q Consensus 160 ~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~-~~~~~~~~~~l~~l~~L~~L~L 238 (614)
.-..++|..|.|+...+..|+.+.+|+.|++++|.+..+-|.+|.+++.|..|-+.+ |+|+......|.++..++.|.+
T Consensus 68 ~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLll 147 (498)
T KOG4237|consen 68 ETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLL 147 (498)
T ss_pred cceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhc
Confidence 455667777777766666677777777777777777766667777776666655544 6666555556666667777777
Q ss_pred ccCccccccchhccCCCCCCEEeccCCcCccccCccccCCCCCCEEecCCCcccccCCccCCCCCCCCEeecCCCccccc
Q 047332 239 YSNSFSGSIPSIIGNLKSLLQLDLSENQLIGSIPLSFGNLSRLTLMSLFNNLLSGSLPPILGNLKSLSALGLHINQLSGV 318 (614)
Q Consensus 239 ~~~~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~ 318 (614)
.-|.+.......+..++++..|.+.+|.+...--..|..+..++.+.+..|.+.. ..+++-+.... . .
T Consensus 148 Nan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~ic-----dCnL~wla~~~-a------~ 215 (498)
T KOG4237|consen 148 NANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFIC-----DCNLPWLADDL-A------M 215 (498)
T ss_pred ChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCcccc-----ccccchhhhHH-h------h
Confidence 6666665556666666777777776666653333355666666666666554321 11111111100 0 1
Q ss_pred CCccccCCCCCCEEEccCCcccccCcccccCC-CCCcEEEcccccCCccCC-ccccCCCCCCEEECcCCCCCCCCCcccc
Q 047332 319 IPSSIGNLSSLRALYLYNNGLCGFVPEEIRYL-KSLSELELCKNHLSGVIP-HSIGNLTGLLLLNMCENHLSGPIPKSFK 396 (614)
Q Consensus 319 ~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~-~~L~~L~l~~n~~~~~~~-~~~~~l~~L~~L~ls~n~l~~~~~~~~~ 396 (614)
.|..++.........+.+.++..+-+..|... ..+.+--.+.+...+..| ..|..+++|+++++++|.++.+-+.+|.
T Consensus 216 ~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe 295 (498)
T KOG4237|consen 216 NPIETSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFE 295 (498)
T ss_pred chhhcccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhc
Confidence 11122222233333333344433322222211 111111111222222323 3467778888888888888877777888
Q ss_pred CCCCCcEEEccCCcCCcccccccCCCCCCCEEECcCcccccccCccccCCCCCcEEEcccCccccc-----CCccCC---
Q 047332 397 NLTSVERVLLNQNNLSGKVYEAFGDHPNLTFLNLSQNNFCGEISFNWRNFPKLGTFIVSVNNISGS-----IPPEIG--- 468 (614)
Q Consensus 397 ~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-----~~~~~~--- 468 (614)
+...+++|++..|++.......|.++..|+.|++++|+|+...|..|....+|.+|.+-.|.+.-. +.+|+.
T Consensus 296 ~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~~CnC~l~wl~~Wlr~~~ 375 (498)
T KOG4237|consen 296 GAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPFNCNCRLAWLGEWLRKKS 375 (498)
T ss_pred chhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCcccCccchHHHHHHHhhCC
Confidence 888888888888887766667777888888888888888777777777777888887776654311 111110
Q ss_pred --------CCCCCCEEeCCCCcCccccchhccCCCCCCEeeccCCccccCccccccCCCCCCEE-eCCCCcCcccCCccc
Q 047332 469 --------DSPKLQVLDLSSNSIVGEIPVQLGKLFSLNKLILNLNQLSGGMPLELGSLTELQYL-DLSANKLKSSIPKSI 539 (614)
Q Consensus 469 --------~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L-~ls~n~l~~~~~~~l 539 (614)
....++.+.+++..+...-.. .=++. +|.- .+.+-+.|+.+.++ ..|+..+. .+|..+
T Consensus 376 ~~~~~~Cq~p~~~~~~~~~dv~~~~~~c~------~~ee~---~~~~---s~~cP~~c~c~~tVvRcSnk~lk-~lp~~i 442 (498)
T KOG4237|consen 376 VVGNPRCQSPGFVRQIPISDVAFGDFRCG------GPEEL---GCLT---SSPCPPPCTCLDTVVRCSNKLLK-LLPRGI 442 (498)
T ss_pred CCCCCCCCCCchhccccchhccccccccC------Ccccc---CCCC---CCCCCCCcchhhhhHhhcccchh-hcCCCC
Confidence 111233333333332210000 00000 0000 11112334444433 33333333 555444
Q ss_pred cccCCCCEEeCCCCcCCcCCChhhhcCCCCCeeeCCCCCCCCCCCccccCCCCCCeEECcCC
Q 047332 540 GNLLRLRYLDLSNNQFGHKIPIELEKLIHLSELDLSYNFLGEEIPFQICNVKSLEKLNLCHN 601 (614)
Q Consensus 540 ~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~sL~~L~l~~n 601 (614)
. ..-..|++.+|.++ .+|.. .+.+| .+|+++|++...--..|.+++.|.+|-|++|
T Consensus 443 P--~d~telyl~gn~~~-~vp~~--~~~~l-~~dls~n~i~~Lsn~tf~n~tql~tlilsyn 498 (498)
T KOG4237|consen 443 P--VDVTELYLDGNAIT-SVPDE--LLRSL-LLDLSNNRISSLSNYTFSNMTQLSTLILSYN 498 (498)
T ss_pred C--chhHHHhcccchhc-ccCHH--HHhhh-hcccccCceehhhcccccchhhhheeEEecC
Confidence 3 23467777888873 45554 45566 7888888887666667777888888887775
No 15
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.83 E-value=5.2e-20 Score=196.38 Aligned_cols=265 Identities=25% Similarity=0.296 Sum_probs=166.1
Q ss_pred CCCCEEecCCCcccccCCccCCCCCCCCEeecCCCcccccCCccccCCCCCCEEEccCCcccccCcccccCCCCCcEEEc
Q 047332 279 SRLTLMSLFNNLLSGSLPPILGNLKSLSALGLHINQLSGVIPSSIGNLSSLRALYLYNNGLCGFVPEEIRYLKSLSELEL 358 (614)
Q Consensus 279 ~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l 358 (614)
..-..|+++++.++ .+|..+. ++|+.|++.+|+++. +|. ..++|++|++++|+++.. |. ..++|+.|++
T Consensus 201 ~~~~~LdLs~~~Lt-sLP~~l~--~~L~~L~L~~N~Lt~-LP~---lp~~Lk~LdLs~N~LtsL-P~---lp~sL~~L~L 269 (788)
T PRK15387 201 NGNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLTS-LPA---LPPELRTLEVSGNQLTSL-PV---LPPGLLELSI 269 (788)
T ss_pred CCCcEEEcCCCCCC-cCCcchh--cCCCEEEccCCcCCC-CCC---CCCCCcEEEecCCccCcc-cC---cccccceeec
Confidence 34567888888887 5676664 478888888888883 453 247888888888888753 43 2367888888
Q ss_pred ccccCCccCCccccCCCCCCEEECcCCCCCCCCCccccCCCCCcEEEccCCcCCcccccccCCCCCCCEEECcCcccccc
Q 047332 359 CKNHLSGVIPHSIGNLTGLLLLNMCENHLSGPIPKSFKNLTSVERVLLNQNNLSGKVYEAFGDHPNLTFLNLSQNNFCGE 438 (614)
Q Consensus 359 ~~n~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 438 (614)
++|.++. +|.. ..+|+.|++++|.++.. |. ..++|+.|++++|++.+. +. ....|+.|++++|.+.+
T Consensus 270 s~N~L~~-Lp~l---p~~L~~L~Ls~N~Lt~L-P~---~p~~L~~LdLS~N~L~~L-p~---lp~~L~~L~Ls~N~L~~- 336 (788)
T PRK15387 270 FSNPLTH-LPAL---PSGLCKLWIFGNQLTSL-PV---LPPGLQELSVSDNQLASL-PA---LPSELCKLWAYNNQLTS- 336 (788)
T ss_pred cCCchhh-hhhc---hhhcCEEECcCCccccc-cc---cccccceeECCCCccccC-CC---CcccccccccccCcccc-
Confidence 8887773 3432 24677788888877643 32 235677778877777643 22 12356677777777653
Q ss_pred cCccccCCCCCcEEEcccCcccccCCccCCCCCCCCEEeCCCCcCccccchhccCCCCCCEeeccCCccccCccccccCC
Q 047332 439 ISFNWRNFPKLGTFIVSVNNISGSIPPEIGDSPKLQVLDLSSNSIVGEIPVQLGKLFSLNKLILNLNQLSGGMPLELGSL 518 (614)
Q Consensus 439 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l 518 (614)
+|. ...+|+.|++++|++++ +|.. .++|+.|++++|.+. .+|.. ..+|+.|++++|.+++ +|.. .
T Consensus 337 LP~---lp~~Lq~LdLS~N~Ls~-LP~l---p~~L~~L~Ls~N~L~-~LP~l---~~~L~~LdLs~N~Lt~-LP~l---~ 401 (788)
T PRK15387 337 LPT---LPSGLQELSVSDNQLAS-LPTL---PSELYKLWAYNNRLT-SLPAL---PSGLKELIVSGNRLTS-LPVL---P 401 (788)
T ss_pred ccc---cccccceEecCCCccCC-CCCC---Ccccceehhhccccc-cCccc---ccccceEEecCCcccC-CCCc---c
Confidence 332 12467777777777663 3432 245666677777666 34432 2456677777776663 3322 2
Q ss_pred CCCCEEeCCCCcCcccCCccccccCCCCEEeCCCCcCCcCCChhhhcCCCCCeeeCCCCCCCCCCCccc
Q 047332 519 TELQYLDLSANKLKSSIPKSIGNLLRLRYLDLSNNQFGHKIPIELEKLIHLSELDLSYNFLGEEIPFQI 587 (614)
Q Consensus 519 ~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~l 587 (614)
++|+.|++++|.+. .+|.. ..+|+.|++++|+++ .+|..+.++++|+.|+|++|++.+..|..+
T Consensus 402 s~L~~LdLS~N~Ls-sIP~l---~~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls~~~~~~L 465 (788)
T PRK15387 402 SELKELMVSGNRLT-SLPML---PSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQAL 465 (788)
T ss_pred cCCCEEEccCCcCC-CCCcc---hhhhhhhhhccCccc-ccChHHhhccCCCeEECCCCCCCchHHHHH
Confidence 45666777777666 34532 235566677777664 456666666677777777777666655544
No 16
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.82 E-value=2.4e-19 Score=191.42 Aligned_cols=265 Identities=23% Similarity=0.336 Sum_probs=157.9
Q ss_pred CEEeccCCcCccccCccccCCCCCCEEecCCCcccccCCccCCCCCCCCEeecCCCcccccCCccccCCCCCCEEEccCC
Q 047332 258 LQLDLSENQLIGSIPLSFGNLSRLTLMSLFNNLLSGSLPPILGNLKSLSALGLHINQLSGVIPSSIGNLSSLRALYLYNN 337 (614)
Q Consensus 258 ~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n 337 (614)
..|+++++.++ .+|..+. ++|+.|++.+|.++ .+|. ..++|++|++++|+++. +|.. .++|+.|++++|
T Consensus 204 ~~LdLs~~~Lt-sLP~~l~--~~L~~L~L~~N~Lt-~LP~---lp~~Lk~LdLs~N~Lts-LP~l---p~sL~~L~Ls~N 272 (788)
T PRK15387 204 AVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLT-SLPA---LPPELRTLEVSGNQLTS-LPVL---PPGLLELSIFSN 272 (788)
T ss_pred cEEEcCCCCCC-cCCcchh--cCCCEEEccCCcCC-CCCC---CCCCCcEEEecCCccCc-ccCc---ccccceeeccCC
Confidence 34445444444 3343332 24455555555544 2332 12455555555555552 2321 245555555555
Q ss_pred cccccCcccccCCCCCcEEEcccccCCccCCccccCCCCCCEEECcCCCCCCCCCccccCCCCCcEEEccCCcCCccccc
Q 047332 338 GLCGFVPEEIRYLKSLSELELCKNHLSGVIPHSIGNLTGLLLLNMCENHLSGPIPKSFKNLTSVERVLLNQNNLSGKVYE 417 (614)
Q Consensus 338 ~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~ 417 (614)
.+.. +|.. .+.|+.|++++|.++. +|. .+++|+.|++++|.+++. |.. ...|+.|++.+|.+++ ++.
T Consensus 273 ~L~~-Lp~l---p~~L~~L~Ls~N~Lt~-LP~---~p~~L~~LdLS~N~L~~L-p~l---p~~L~~L~Ls~N~L~~-LP~ 339 (788)
T PRK15387 273 PLTH-LPAL---PSGLCKLWIFGNQLTS-LPV---LPPGLQELSVSDNQLASL-PAL---PSELCKLWAYNNQLTS-LPT 339 (788)
T ss_pred chhh-hhhc---hhhcCEEECcCCcccc-ccc---cccccceeECCCCccccC-CCC---cccccccccccCcccc-ccc
Confidence 5543 2221 2345556666665552 232 124566666666666542 221 1345566666666653 221
Q ss_pred ccCCCCCCCEEECcCcccccccCccccCCCCCcEEEcccCcccccCCccCCCCCCCCEEeCCCCcCccccchhccCCCCC
Q 047332 418 AFGDHPNLTFLNLSQNNFCGEISFNWRNFPKLGTFIVSVNNISGSIPPEIGDSPKLQVLDLSSNSIVGEIPVQLGKLFSL 497 (614)
Q Consensus 418 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L 497 (614)
...+|+.|++++|++.+ +|.. .++|+.|++++|.+.. +|.. ..+|+.|++++|++. .+|.. .++|
T Consensus 340 ---lp~~Lq~LdLS~N~Ls~-LP~l---p~~L~~L~Ls~N~L~~-LP~l---~~~L~~LdLs~N~Lt-~LP~l---~s~L 404 (788)
T PRK15387 340 ---LPSGLQELSVSDNQLAS-LPTL---PSELYKLWAYNNRLTS-LPAL---PSGLKELIVSGNRLT-SLPVL---PSEL 404 (788)
T ss_pred ---cccccceEecCCCccCC-CCCC---Ccccceehhhcccccc-Cccc---ccccceEEecCCccc-CCCCc---ccCC
Confidence 12367777777777764 3321 3567777788877763 5543 356888999999887 45543 3578
Q ss_pred CEeeccCCccccCccccccCCCCCCEEeCCCCcCcccCCccccccCCCCEEeCCCCcCCcCCChhhhcC
Q 047332 498 NKLILNLNQLSGGMPLELGSLTELQYLDLSANKLKSSIPKSIGNLLRLRYLDLSNNQFGHKIPIELEKL 566 (614)
Q Consensus 498 ~~L~l~~n~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~l~~l 566 (614)
+.|++++|.+++ +|.. ..+|+.|++++|.++ .+|..+..+++|+.|++++|++++..|..+..+
T Consensus 405 ~~LdLS~N~Lss-IP~l---~~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls~~~~~~L~~l 468 (788)
T PRK15387 405 KELMVSGNRLTS-LPML---PSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQALREI 468 (788)
T ss_pred CEEEccCCcCCC-CCcc---hhhhhhhhhccCccc-ccChHHhhccCCCeEECCCCCCCchHHHHHHHH
Confidence 999999999884 5643 246888999999998 789889999999999999999998887766443
No 17
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.79 E-value=1.5e-18 Score=186.58 Aligned_cols=246 Identities=27% Similarity=0.419 Sum_probs=128.0
Q ss_pred CCCEEeCCCCCCCCCCCcCCCCCCCCCEEEcccccCCCCCCccccCCCCCcEEEeccccCCCCCCcccCCCCCCcEEEee
Q 047332 112 KLQYLDLGSNQLSGVIPPEIGHLNQLRILYFDVNQLHGSIPPEIGQLSLINVLALCHNNLYGSIPSSLGNLSNLANFYFN 191 (614)
Q Consensus 112 ~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~ 191 (614)
+...|+++++.++ .+|..+ .++|+.|++++|.++ .+|..+. ++|++|++++|+++ .+|..+. .+|+.|+++
T Consensus 179 ~~~~L~L~~~~Lt-sLP~~I--p~~L~~L~Ls~N~Lt-sLP~~l~--~nL~~L~Ls~N~Lt-sLP~~l~--~~L~~L~Ls 249 (754)
T PRK15370 179 NKTELRLKILGLT-TIPACI--PEQITTLILDNNELK-SLPENLQ--GNIKTLYANSNQLT-SIPATLP--DTIQEMELS 249 (754)
T ss_pred CceEEEeCCCCcC-cCCccc--ccCCcEEEecCCCCC-cCChhhc--cCCCEEECCCCccc-cCChhhh--ccccEEECc
Confidence 3455555555555 344433 234555555555555 3444332 35555555555555 2343221 345555665
Q ss_pred cCCCcccCCccccCCCCCCeeeccCccCCccCCccccCCCCCCeEEcccCccccccchhccCCCCCCEEeccCCcCcccc
Q 047332 192 NNSLFDSIPLVLGNLNSLSTMDLSQNQFSGSIPLSLGNLSNLGILYLYSNSFSGSIPSIIGNLKSLLQLDLSENQLIGSI 271 (614)
Q Consensus 192 ~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~ 271 (614)
+|.+. .+|..+. ++|+.|++++|+++ .+|..+. .+|+.|++++|.++ .+|..+. ++|+.|++++|.+.. +
T Consensus 250 ~N~L~-~LP~~l~--s~L~~L~Ls~N~L~-~LP~~l~--~sL~~L~Ls~N~Lt-~LP~~lp--~sL~~L~Ls~N~Lt~-L 319 (754)
T PRK15370 250 INRIT-ELPERLP--SALQSLDLFHNKIS-CLPENLP--EELRYLSVYDNSIR-TLPAHLP--SGITHLNVQSNSLTA-L 319 (754)
T ss_pred CCccC-cCChhHh--CCCCEEECcCCccC-ccccccC--CCCcEEECCCCccc-cCcccch--hhHHHHHhcCCcccc-C
Confidence 55554 2333332 35666666666555 3444332 35666666666555 3343222 356666666666552 3
Q ss_pred CccccCCCCCCEEecCCCcccccCCccCCCCCCCCEeecCCCcccccCCccccCCCCCCEEEccCCcccccCcccccCCC
Q 047332 272 PLSFGNLSRLTLMSLFNNLLSGSLPPILGNLKSLSALGLHINQLSGVIPSSIGNLSSLRALYLYNNGLCGFVPEEIRYLK 351 (614)
Q Consensus 272 ~~~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~ 351 (614)
|..+ .++|+.|++++|.+++ +|..+. ++|+.|++++|+++ .+|..+. +.|+.|++++|.+.. +|..+. .
T Consensus 320 P~~l--~~sL~~L~Ls~N~Lt~-LP~~l~--~sL~~L~Ls~N~L~-~LP~~lp--~~L~~LdLs~N~Lt~-LP~~l~--~ 388 (754)
T PRK15370 320 PETL--PPGLKTLEAGENALTS-LPASLP--PELQVLDVSKNQIT-VLPETLP--PTITTLDVSRNALTN-LPENLP--A 388 (754)
T ss_pred Cccc--cccceeccccCCcccc-CChhhc--CcccEEECCCCCCC-cCChhhc--CCcCEEECCCCcCCC-CCHhHH--H
Confidence 3322 2456666666666653 444332 56666666666665 3444332 466667777666664 333332 2
Q ss_pred CCcEEEcccccCCccCCccc----cCCCCCCEEECcCCCCC
Q 047332 352 SLSELELCKNHLSGVIPHSI----GNLTGLLLLNMCENHLS 388 (614)
Q Consensus 352 ~L~~L~l~~n~~~~~~~~~~----~~l~~L~~L~ls~n~l~ 388 (614)
.|+.|++++|.++ .+|..+ ..++.+..+++.+|.++
T Consensus 389 sL~~LdLs~N~L~-~LP~sl~~~~~~~~~l~~L~L~~Npls 428 (754)
T PRK15370 389 ALQIMQASRNNLV-RLPESLPHFRGEGPQPTRIIVEYNPFS 428 (754)
T ss_pred HHHHHhhccCCcc-cCchhHHHHhhcCCCccEEEeeCCCcc
Confidence 5666677777666 333332 33456667777777665
No 18
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.77 E-value=3.5e-20 Score=185.62 Aligned_cols=278 Identities=24% Similarity=0.300 Sum_probs=160.3
Q ss_pred eecCCCccc-ccCCccccCCCCCCEEEccCCccccc----CcccccCCCCCcEEEcccccCCccCCccccCCCCCCEEEC
Q 047332 308 LGLHINQLS-GVIPSSIGNLSSLRALYLYNNGLCGF----VPEEIRYLKSLSELELCKNHLSGVIPHSIGNLTGLLLLNM 382 (614)
Q Consensus 308 L~L~~n~l~-~~~~~~l~~~~~L~~L~l~~n~~~~~----~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l 382 (614)
|+|..+.+. +.....+..+..|+.++++++.+.+. ++..+...+.+++++++++.+.+. +..+
T Consensus 3 l~L~~~~l~~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~-~~~~----------- 70 (319)
T cd00116 3 LSLKGELLKTERATELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRI-PRGL----------- 70 (319)
T ss_pred cccccCcccccchHHHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCc-chHH-----------
Confidence 455555554 22333344455566666666665332 233344455566666665554410 0000
Q ss_pred cCCCCCCCCCccccCCCCCcEEEccCCcCCcccccccCCC---CCCCEEECcCcccccc----cCccccCC-CCCcEEEc
Q 047332 383 CENHLSGPIPKSFKNLTSVERVLLNQNNLSGKVYEAFGDH---PNLTFLNLSQNNFCGE----ISFNWRNF-PKLGTFIV 454 (614)
Q Consensus 383 s~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~---~~L~~L~l~~~~~~~~----~~~~~~~~-~~L~~L~l 454 (614)
..++..+..+++|+.|++++|.+....+..+..+ ++|++|++++|.+.+. +...+..+ ++|+.|++
T Consensus 71 ------~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L 144 (319)
T cd00116 71 ------QSLLQGLTKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVL 144 (319)
T ss_pred ------HHHHHHHHhcCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEc
Confidence 0112233444555555555555543333332222 3366666666665421 11223344 66677777
Q ss_pred ccCccccc----CCccCCCCCCCCEEeCCCCcCccc----cchhccCCCCCCEeeccCCccccC----ccccccCCCCCC
Q 047332 455 SVNNISGS----IPPEIGDSPKLQVLDLSSNSIVGE----IPVQLGKLFSLNKLILNLNQLSGG----MPLELGSLTELQ 522 (614)
Q Consensus 455 ~~~~~~~~----~~~~~~~~~~L~~L~l~~~~~~~~----~~~~~~~~~~L~~L~l~~n~~~~~----~~~~~~~l~~L~ 522 (614)
++|.+++. ++..+..++.|++|++++|.+.+. ++..+..+++|++|++++|.+.+. +...+..+++|+
T Consensus 145 ~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~ 224 (319)
T cd00116 145 GRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLE 224 (319)
T ss_pred CCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCC
Confidence 77766632 233455567788888888877632 233445567888888888877643 334566778899
Q ss_pred EEeCCCCcCcccCCccccc-----cCCCCEEeCCCCcCCc----CCChhhhcCCCCCeeeCCCCCCCCC----CCccccC
Q 047332 523 YLDLSANKLKSSIPKSIGN-----LLRLRYLDLSNNQFGH----KIPIELEKLIHLSELDLSYNFLGEE----IPFQICN 589 (614)
Q Consensus 523 ~L~ls~n~l~~~~~~~l~~-----l~~L~~L~l~~n~~~~----~~p~~l~~l~~L~~L~L~~n~~~~~----~p~~l~~ 589 (614)
+|++++|.+.+.....+.. .+.|++|++++|.+++ .+...+..+++|+.+++++|.+... +...+..
T Consensus 225 ~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~~~~~~~~ 304 (319)
T cd00116 225 VLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQLLAESLLE 304 (319)
T ss_pred EEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHHHHHHHHHHHhh
Confidence 9999988887533333322 3789999999998863 2334556678899999999988755 3333444
Q ss_pred C-CCCCeEECcCCCC
Q 047332 590 V-KSLEKLNLCHNNL 603 (614)
Q Consensus 590 l-~sL~~L~l~~n~l 603 (614)
. +.|+.+++.+|++
T Consensus 305 ~~~~~~~~~~~~~~~ 319 (319)
T cd00116 305 PGNELESLWVKDDSF 319 (319)
T ss_pred cCCchhhcccCCCCC
Confidence 4 6788999988875
No 19
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.75 E-value=1.1e-17 Score=180.03 Aligned_cols=247 Identities=23% Similarity=0.388 Sum_probs=151.7
Q ss_pred CCCCEeecCCCcccccCCccccCCCCCCEEEccCCcccccCcccccCCCCCcEEEcccccCCccCCccccCCCCCCEEEC
Q 047332 303 KSLSALGLHINQLSGVIPSSIGNLSSLRALYLYNNGLCGFVPEEIRYLKSLSELELCKNHLSGVIPHSIGNLTGLLLLNM 382 (614)
Q Consensus 303 ~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l 382 (614)
.+...|+++++.++ .+|..+. +.++.|++++|++.. +|..+ .++|++|++++|.++ .+|..+. .+|+.|++
T Consensus 178 ~~~~~L~L~~~~Lt-sLP~~Ip--~~L~~L~Ls~N~Lts-LP~~l--~~nL~~L~Ls~N~Lt-sLP~~l~--~~L~~L~L 248 (754)
T PRK15370 178 NNKTELRLKILGLT-TIPACIP--EQITTLILDNNELKS-LPENL--QGNIKTLYANSNQLT-SIPATLP--DTIQEMEL 248 (754)
T ss_pred cCceEEEeCCCCcC-cCCcccc--cCCcEEEecCCCCCc-CChhh--ccCCCEEECCCCccc-cCChhhh--ccccEEEC
Confidence 34567888888777 4555443 578888888888875 44433 257888888888877 4454443 46788888
Q ss_pred cCCCCCCCCCccccCCCCCcEEEccCCcCCcccccccCCCCCCCEEECcCcccccccCccccCCCCCcEEEcccCccccc
Q 047332 383 CENHLSGPIPKSFKNLTSVERVLLNQNNLSGKVYEAFGDHPNLTFLNLSQNNFCGEISFNWRNFPKLGTFIVSVNNISGS 462 (614)
Q Consensus 383 s~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 462 (614)
++|.+. .+|..+. .+|+.|++++|++.. ++..+ .++|+.|++++|.+.+ +|..+ .++|+.|++++|.++.
T Consensus 249 s~N~L~-~LP~~l~--s~L~~L~Ls~N~L~~-LP~~l--~~sL~~L~Ls~N~Lt~-LP~~l--p~sL~~L~Ls~N~Lt~- 318 (754)
T PRK15370 249 SINRIT-ELPERLP--SALQSLDLFHNKISC-LPENL--PEELRYLSVYDNSIRT-LPAHL--PSGITHLNVQSNSLTA- 318 (754)
T ss_pred cCCccC-cCChhHh--CCCCEEECcCCccCc-ccccc--CCCCcEEECCCCcccc-Ccccc--hhhHHHHHhcCCcccc-
Confidence 888776 4454443 467788888777763 34433 2467777777777663 23222 2456677777776663
Q ss_pred CCccCCCCCCCCEEeCCCCcCccccchhccCCCCCCEeeccCCccccCccccccCCCCCCEEeCCCCcCcccCCcccccc
Q 047332 463 IPPEIGDSPKLQVLDLSSNSIVGEIPVQLGKLFSLNKLILNLNQLSGGMPLELGSLTELQYLDLSANKLKSSIPKSIGNL 542 (614)
Q Consensus 463 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~l~~l 542 (614)
+|..+ .++|+.|++++|.++ .+|..+. ++|+.|++++|.+. .+|..+. ++|+.|++++|.+. .+|..+.
T Consensus 319 LP~~l--~~sL~~L~Ls~N~Lt-~LP~~l~--~sL~~L~Ls~N~L~-~LP~~lp--~~L~~LdLs~N~Lt-~LP~~l~-- 387 (754)
T PRK15370 319 LPETL--PPGLKTLEAGENALT-SLPASLP--PELQVLDVSKNQIT-VLPETLP--PTITTLDVSRNALT-NLPENLP-- 387 (754)
T ss_pred CCccc--cccceeccccCCccc-cCChhhc--CcccEEECCCCCCC-cCChhhc--CCcCEEECCCCcCC-CCCHhHH--
Confidence 34332 256777777777666 3444332 56777777777666 3454442 46677777777666 4454443
Q ss_pred CCCCEEeCCCCcCCcCCChhhh----cCCCCCeeeCCCCCCC
Q 047332 543 LRLRYLDLSNNQFGHKIPIELE----KLIHLSELDLSYNFLG 580 (614)
Q Consensus 543 ~~L~~L~l~~n~~~~~~p~~l~----~l~~L~~L~L~~n~~~ 580 (614)
.+|+.|++++|++. .+|..+. .++.+..|++.+|++.
T Consensus 388 ~sL~~LdLs~N~L~-~LP~sl~~~~~~~~~l~~L~L~~Npls 428 (754)
T PRK15370 388 AALQIMQASRNNLV-RLPESLPHFRGEGPQPTRIIVEYNPFS 428 (754)
T ss_pred HHHHHHhhccCCcc-cCchhHHHHhhcCCCccEEEeeCCCcc
Confidence 25666677777664 3343332 3356666777777664
No 20
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.74 E-value=2.6e-19 Score=179.35 Aligned_cols=274 Identities=26% Similarity=0.290 Sum_probs=163.0
Q ss_pred EEecCCCccc-ccCCccCCCCCCCCEeecCCCccccc----CCccccCCCCCCEEEccCCcccc------cCcccccCCC
Q 047332 283 LMSLFNNLLS-GSLPPILGNLKSLSALGLHINQLSGV----IPSSIGNLSSLRALYLYNNGLCG------FVPEEIRYLK 351 (614)
Q Consensus 283 ~L~L~~~~~~-~~~~~~l~~l~~L~~L~L~~n~l~~~----~~~~l~~~~~L~~L~l~~n~~~~------~~~~~~~~~~ 351 (614)
.|+|.++.++ ......+..+.+|++++++++.++.. ++..+...+.++.++++++.+.+ .++..+..++
T Consensus 2 ~l~L~~~~l~~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~ 81 (319)
T cd00116 2 QLSLKGELLKTERATELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGC 81 (319)
T ss_pred ccccccCcccccchHHHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcC
Confidence 4677777776 34445566778899999999998543 44456677889999999987762 2233455567
Q ss_pred CCcEEEcccccCCccCCccccCCCC---CCEEECcCCCCCCC----CCccccCCCCCcEEEccCCcCCcccccccCCCCC
Q 047332 352 SLSELELCKNHLSGVIPHSIGNLTG---LLLLNMCENHLSGP----IPKSFKNLTSVERVLLNQNNLSGKVYEAFGDHPN 424 (614)
Q Consensus 352 ~L~~L~l~~n~~~~~~~~~~~~l~~---L~~L~ls~n~l~~~----~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~ 424 (614)
+|++|++++|.+.+..+..+..+.. |+.|++++|.+++. +...+..+ .++
T Consensus 82 ~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~-----------------------~~~ 138 (319)
T cd00116 82 GLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDL-----------------------PPA 138 (319)
T ss_pred ceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhC-----------------------CCC
Confidence 7777777777776444443333333 66666666655421 11122333 044
Q ss_pred CCEEECcCcccccc----cCccccCCCCCcEEEcccCccccc----CCccCCCCCCCCEEeCCCCcCccc----cchhcc
Q 047332 425 LTFLNLSQNNFCGE----ISFNWRNFPKLGTFIVSVNNISGS----IPPEIGDSPKLQVLDLSSNSIVGE----IPVQLG 492 (614)
Q Consensus 425 L~~L~l~~~~~~~~----~~~~~~~~~~L~~L~l~~~~~~~~----~~~~~~~~~~L~~L~l~~~~~~~~----~~~~~~ 492 (614)
|+.|++++|.+.+. +...+..+++|++|++++|.+++. ++..+..+++|++|++++|.+.+. +...+.
T Consensus 139 L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~ 218 (319)
T cd00116 139 LEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLA 218 (319)
T ss_pred ceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhc
Confidence 55555555544421 122233445555555555555432 222334456777777777766532 234455
Q ss_pred CCCCCCEeeccCCccccCccccc-----cCCCCCCEEeCCCCcCcc----cCCccccccCCCCEEeCCCCcCCcC----C
Q 047332 493 KLFSLNKLILNLNQLSGGMPLEL-----GSLTELQYLDLSANKLKS----SIPKSIGNLLRLRYLDLSNNQFGHK----I 559 (614)
Q Consensus 493 ~~~~L~~L~l~~n~~~~~~~~~~-----~~l~~L~~L~ls~n~l~~----~~~~~l~~l~~L~~L~l~~n~~~~~----~ 559 (614)
.+++|++|++++|.+.+.....+ ...+.|+.|++++|.+++ .+...+..+++|+.+++++|.++.. .
T Consensus 219 ~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~~ 298 (319)
T cd00116 219 SLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQLL 298 (319)
T ss_pred ccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHHHHHHH
Confidence 67778888888777764222221 124688888888887762 2334455667888888888888754 2
Q ss_pred ChhhhcC-CCCCeeeCCCCCC
Q 047332 560 PIELEKL-IHLSELDLSYNFL 579 (614)
Q Consensus 560 p~~l~~l-~~L~~L~L~~n~~ 579 (614)
...+... +.|+++++.+|++
T Consensus 299 ~~~~~~~~~~~~~~~~~~~~~ 319 (319)
T cd00116 299 AESLLEPGNELESLWVKDDSF 319 (319)
T ss_pred HHHHhhcCCchhhcccCCCCC
Confidence 2333344 6788888877753
No 21
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.65 E-value=1.6e-18 Score=144.40 Aligned_cols=166 Identities=30% Similarity=0.567 Sum_probs=128.7
Q ss_pred cccCCCCCcEEECCCCCCCccCcccccCCCCCCEEeCCCCCCCCCCCcCCCCCCCCCEEEcccccCCCCCCccccCCCCC
Q 047332 82 AFSSFPHLVQLNLSFNIFFGIIPPQIGNLSKLQYLDLGSNQLSGVIPPEIGHLNQLRILYFDVNQLHGSIPPEIGQLSLI 161 (614)
Q Consensus 82 ~~~~l~~L~~L~Ls~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L 161 (614)
.+..+.+++.|.||+|+++. +|..+..+.+|+.|++++|++. .+|..++.+++|++|++.-|++. .+|..|+.++.|
T Consensus 28 gLf~~s~ITrLtLSHNKl~~-vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~l 104 (264)
T KOG0617|consen 28 GLFNMSNITRLTLSHNKLTV-VPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPAL 104 (264)
T ss_pred cccchhhhhhhhcccCceee-cCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCCchh
Confidence 35556777778888888765 4556788888888888888887 77888888888888888888776 778888888888
Q ss_pred cEEEeccccCCC-CCCcccCCCCCCcEEEeecCCCcccCCccccCCCCCCeeeccCccCCccCCccccCCCCCCeEEccc
Q 047332 162 NVLALCHNNLYG-SIPSSLGNLSNLANFYFNNNSLFDSIPLVLGNLNSLSTMDLSQNQFSGSIPLSLGNLSNLGILYLYS 240 (614)
Q Consensus 162 ~~L~l~~~~l~~-~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~ 240 (614)
+.||+.+|++.. .+|..|..+..|+.|++++|.+ ..+|..++++++|+.|.+.+|.+- .+|..++.++.|++|.+.+
T Consensus 105 evldltynnl~e~~lpgnff~m~tlralyl~dndf-e~lp~dvg~lt~lqil~lrdndll-~lpkeig~lt~lrelhiqg 182 (264)
T KOG0617|consen 105 EVLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDF-EILPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTRLRELHIQG 182 (264)
T ss_pred hhhhccccccccccCCcchhHHHHHHHHHhcCCCc-ccCChhhhhhcceeEEeeccCchh-hCcHHHHHHHHHHHHhccc
Confidence 888888887764 5677777778888888888876 456777888888888888888776 6777888888888888888
Q ss_pred CccccccchhccC
Q 047332 241 NSFSGSIPSIIGN 253 (614)
Q Consensus 241 ~~~~~~~~~~l~~ 253 (614)
|+++ .+|..+++
T Consensus 183 nrl~-vlppel~~ 194 (264)
T KOG0617|consen 183 NRLT-VLPPELAN 194 (264)
T ss_pred ceee-ecChhhhh
Confidence 8877 66655554
No 22
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.58 E-value=2.7e-17 Score=137.08 Aligned_cols=163 Identities=33% Similarity=0.589 Sum_probs=97.7
Q ss_pred CCCCCCEEeCCCCCCCCCCCcCCCCCCCCCEEEcccccCCCCCCccccCCCCCcEEEeccccCCCCCCcccCCCCCCcEE
Q 047332 109 NLSKLQYLDLGSNQLSGVIPPEIGHLNQLRILYFDVNQLHGSIPPEIGQLSLINVLALCHNNLYGSIPSSLGNLSNLANF 188 (614)
Q Consensus 109 ~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L 188 (614)
.+.+.+.|.+|+|+++ .+|..++.+.+|+.|++.+|+++ .+|.+++.+++|+.|++.-|.+. ..|..|+.++.|+.|
T Consensus 31 ~~s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~levl 107 (264)
T KOG0617|consen 31 NMSNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPALEVL 107 (264)
T ss_pred chhhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCCchhhhh
Confidence 4455666677777776 55666777777777777777666 66666666666666666655554 444445555555555
Q ss_pred EeecCCCcccCCccccCCCCCCeeeccCccCCccCCccccCCCCCCeEEcccCccccccchhccCCCCCCEEeccCCcCc
Q 047332 189 YFNNNSLFDSIPLVLGNLNSLSTMDLSQNQFSGSIPLSLGNLSNLGILYLYSNSFSGSIPSIIGNLKSLLQLDLSENQLI 268 (614)
Q Consensus 189 ~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~n~~~ 268 (614)
++.+|.+.. ..+|..|..+..|+.|++++|.+. .+|..++++++|+.|.+.+|.+.
T Consensus 108 dltynnl~e-----------------------~~lpgnff~m~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdndll 163 (264)
T KOG0617|consen 108 DLTYNNLNE-----------------------NSLPGNFFYMTTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLL 163 (264)
T ss_pred hcccccccc-----------------------ccCCcchhHHHHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCchh
Confidence 444444432 234445555556666666666665 55666666666666666666655
Q ss_pred cccCccccCCCCCCEEecCCCcccccCCccCC
Q 047332 269 GSIPLSFGNLSRLTLMSLFNNLLSGSLPPILG 300 (614)
Q Consensus 269 ~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~l~ 300 (614)
..|..++.++.|++|.+.+|+++ .+|..++
T Consensus 164 -~lpkeig~lt~lrelhiqgnrl~-vlppel~ 193 (264)
T KOG0617|consen 164 -SLPKEIGDLTRLRELHIQGNRLT-VLPPELA 193 (264)
T ss_pred -hCcHHHHHHHHHHHHhcccceee-ecChhhh
Confidence 55666666666666666666665 3443333
No 23
>PLN03150 hypothetical protein; Provisional
Probab=99.58 E-value=1.6e-14 Score=155.34 Aligned_cols=147 Identities=31% Similarity=0.480 Sum_probs=110.8
Q ss_pred chHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC----ccccceeeCCC-----CCEEEEEcCCCCCC
Q 047332 5 SSKETFALLKWKRSLQNKNISLLSSWTLHPDNASNVPSYSKSKISP----CAWLGISCNQA-----GRVISINLSSMALN 75 (614)
Q Consensus 5 ~~~~~~~l~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~----c~w~~~~c~~~-----~~v~~l~l~~~~l~ 75 (614)
.++|.+||+++|+++.. +. ..+|. +..| |.|.|+.|... ..|+.|+|+++.+.
T Consensus 370 ~~~~~~aL~~~k~~~~~-~~--~~~W~---------------g~~C~p~~~~w~Gv~C~~~~~~~~~~v~~L~L~~n~L~ 431 (623)
T PLN03150 370 LLEEVSALQTLKSSLGL-PL--RFGWN---------------GDPCVPQQHPWSGADCQFDSTKGKWFIDGLGLDNQGLR 431 (623)
T ss_pred CchHHHHHHHHHHhcCC-cc--cCCCC---------------CCCCCCcccccccceeeccCCCCceEEEEEECCCCCcc
Confidence 56799999999999865 32 24796 3233 27999999531 24788888888888
Q ss_pred cccCcccccCCCCCcEEECCCCCCCccCcccccCCCCCCEEeCCCCCCCCCCCcCCCCCCCCCEEEcccccCCCCCCccc
Q 047332 76 GTLQEFAFSSFPHLVQLNLSFNIFFGIIPPQIGNLSKLQYLDLGSNQLSGVIPPEIGHLNQLRILYFDVNQLHGSIPPEI 155 (614)
Q Consensus 76 ~~~~~~~~~~l~~L~~L~Ls~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~ 155 (614)
|.++. .+..+++|++|+|++|.+.+.+|..++.+++|++|+|++|.+++.+|..++++++|++|++++|.+.+.+|..+
T Consensus 432 g~ip~-~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~l 510 (623)
T PLN03150 432 GFIPN-DISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAAL 510 (623)
T ss_pred ccCCH-HHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcCCcccccCChHH
Confidence 88777 78888888888888888887788778888888888888888887788778888888888888888777777776
Q ss_pred cCC-CCCcEEEecccc
Q 047332 156 GQL-SLINVLALCHNN 170 (614)
Q Consensus 156 ~~l-~~L~~L~l~~~~ 170 (614)
... .++..+++.+|.
T Consensus 511 ~~~~~~~~~l~~~~N~ 526 (623)
T PLN03150 511 GGRLLHRASFNFTDNA 526 (623)
T ss_pred hhccccCceEEecCCc
Confidence 553 355666666664
No 24
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.24 E-value=6.6e-13 Score=123.96 Aligned_cols=247 Identities=21% Similarity=0.275 Sum_probs=122.3
Q ss_pred cccCCCCCcEEEcccccCCcc----CCccccCCCCCCEEECcCCC---CCCCCCc-------cccCCCCCcEEEccCCcC
Q 047332 346 EIRYLKSLSELELCKNHLSGV----IPHSIGNLTGLLLLNMCENH---LSGPIPK-------SFKNLTSVERVLLNQNNL 411 (614)
Q Consensus 346 ~~~~~~~L~~L~l~~n~~~~~----~~~~~~~l~~L~~L~ls~n~---l~~~~~~-------~~~~~~~L~~L~l~~n~~ 411 (614)
.+..+..++++++++|.+... +...+.+.++|+..++++-- ....+|. .+..+++|+.++|++|.+
T Consensus 25 ~~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~ 104 (382)
T KOG1909|consen 25 ELEPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAF 104 (382)
T ss_pred HhcccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeecccccc
Confidence 344566788888888877633 22334555666666665521 1112222 233444555555555554
Q ss_pred Cccccccc----CCCCCCCEEECcCcccccccCccccCCCCCcEEEcccCcccccCCccCCCCCCCCEEeCCCCcCcc--
Q 047332 412 SGKVYEAF----GDHPNLTFLNLSQNNFCGEISFNWRNFPKLGTFIVSVNNISGSIPPEIGDSPKLQVLDLSSNSIVG-- 485 (614)
Q Consensus 412 ~~~~~~~~----~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-- 485 (614)
....+..| ..+..|++|.+.+|.+.......+.. .|..|. .......-+.|+++...+|++..
T Consensus 105 G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~--al~~l~---------~~kk~~~~~~Lrv~i~~rNrlen~g 173 (382)
T KOG1909|consen 105 GPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGR--ALFELA---------VNKKAASKPKLRVFICGRNRLENGG 173 (382)
T ss_pred CccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHH--HHHHHH---------HHhccCCCcceEEEEeecccccccc
Confidence 43333222 33445555555555442111000000 000000 00112334556666666666542
Q ss_pred --ccchhccCCCCCCEeeccCCccccC----ccccccCCCCCCEEeCCCCcCccc----CCccccccCCCCEEeCCCCcC
Q 047332 486 --EIPVQLGKLFSLNKLILNLNQLSGG----MPLELGSLTELQYLDLSANKLKSS----IPKSIGNLLRLRYLDLSNNQF 555 (614)
Q Consensus 486 --~~~~~~~~~~~L~~L~l~~n~~~~~----~~~~~~~l~~L~~L~ls~n~l~~~----~~~~l~~l~~L~~L~l~~n~~ 555 (614)
.+...|...+.|+.+.+..|.+... ....+..|++|+.|||.+|.++.. +.+.+..+++|+.|++++|.+
T Consensus 174 a~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll 253 (382)
T KOG1909|consen 174 ATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLL 253 (382)
T ss_pred HHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeeccccccc
Confidence 2233445556666666666655422 233456666666666666666532 223455566666666666666
Q ss_pred CcCCChhhh-----cCCCCCeeeCCCCCCCCC----CCccccCCCCCCeEECcCCCC
Q 047332 556 GHKIPIELE-----KLIHLSELDLSYNFLGEE----IPFQICNVKSLEKLNLCHNNL 603 (614)
Q Consensus 556 ~~~~p~~l~-----~l~~L~~L~L~~n~~~~~----~p~~l~~l~sL~~L~l~~n~l 603 (614)
.......+. ..++|++|.+.+|.++.. +...+...+.|+.|+|++|.+
T Consensus 254 ~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l 310 (382)
T KOG1909|consen 254 ENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL 310 (382)
T ss_pred ccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence 554433331 246666777777666543 112233456666677776666
No 25
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.17 E-value=1.4e-12 Score=121.74 Aligned_cols=233 Identities=21% Similarity=0.301 Sum_probs=142.2
Q ss_pred cccCCCCCCEEEccCCccccc----CcccccCCCCCcEEEcccccCCcc----CCc-------cccCCCCCCEEECcCCC
Q 047332 322 SIGNLSSLRALYLYNNGLCGF----VPEEIRYLKSLSELELCKNHLSGV----IPH-------SIGNLTGLLLLNMCENH 386 (614)
Q Consensus 322 ~l~~~~~L~~L~l~~n~~~~~----~~~~~~~~~~L~~L~l~~n~~~~~----~~~-------~~~~l~~L~~L~ls~n~ 386 (614)
.+..+..++.+++++|.+... +...+...+.|+..++++- ++|. +|+ .+..++.|+++++|+|-
T Consensus 25 ~~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~-ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA 103 (382)
T KOG1909|consen 25 ELEPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDM-FTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNA 103 (382)
T ss_pred HhcccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhh-hcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccc
Confidence 345678999999999988753 3345566778888888753 3433 332 34456799999999998
Q ss_pred CCCCCCc----cccCCCCCcEEEccCCcCCccccc-------------ccCCCCCCCEEECcCcccccc----cCccccC
Q 047332 387 LSGPIPK----SFKNLTSVERVLLNQNNLSGKVYE-------------AFGDHPNLTFLNLSQNNFCGE----ISFNWRN 445 (614)
Q Consensus 387 l~~~~~~----~~~~~~~L~~L~l~~n~~~~~~~~-------------~~~~~~~L~~L~l~~~~~~~~----~~~~~~~ 445 (614)
+....+. .+.++..|++|+|.+|.+....-. ....-+.|+.++..+|++... +...++.
T Consensus 104 ~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~~~~ 183 (382)
T KOG1909|consen 104 FGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATALAEAFQS 183 (382)
T ss_pred cCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHHHHHHHHh
Confidence 8654443 346789999999999988632221 123456777777777766432 2233455
Q ss_pred CCCCcEEEcccCccccc----CCccCCCCCCCCEEeCCCCcCccc----cchhccCCCCCCEeeccCCccccCccccc--
Q 047332 446 FPKLGTFIVSVNNISGS----IPPEIGDSPKLQVLDLSSNSIVGE----IPVQLGKLFSLNKLILNLNQLSGGMPLEL-- 515 (614)
Q Consensus 446 ~~~L~~L~l~~~~~~~~----~~~~~~~~~~L~~L~l~~~~~~~~----~~~~~~~~~~L~~L~l~~n~~~~~~~~~~-- 515 (614)
.+.|+.+.+..|.+... +...+..+++|++||+++|.++.. +...+..++.|++|++++|.+...-..+|
T Consensus 184 ~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~ 263 (382)
T KOG1909|consen 184 HPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIAFVD 263 (382)
T ss_pred ccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccccccHHHHHH
Confidence 56777777776665421 223455667777777777666521 22344455566666666666654322222
Q ss_pred ---cCCCCCCEEeCCCCcCccc----CCccccccCCCCEEeCCCCcC
Q 047332 516 ---GSLTELQYLDLSANKLKSS----IPKSIGNLLRLRYLDLSNNQF 555 (614)
Q Consensus 516 ---~~l~~L~~L~ls~n~l~~~----~~~~l~~l~~L~~L~l~~n~~ 555 (614)
...|.|+.|++.+|.++.. +.......+.|+.|+|++|.+
T Consensus 264 al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l 310 (382)
T KOG1909|consen 264 ALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL 310 (382)
T ss_pred HHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence 2345666666666665531 112233455666666666666
No 26
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=99.15 E-value=7.8e-12 Score=114.16 Aligned_cols=132 Identities=36% Similarity=0.365 Sum_probs=93.9
Q ss_pred CCCCCCEEeCCCCcCccccchhccCCCCCCEeeccCCccccCccccccCCCCCCEEeCCCCcCcccCCccccccCCCCEE
Q 047332 469 DSPKLQVLDLSSNSIVGEIPVQLGKLFSLNKLILNLNQLSGGMPLELGSLTELQYLDLSANKLKSSIPKSIGNLLRLRYL 548 (614)
Q Consensus 469 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L 548 (614)
....|+++|+++|.++ .+.+...-.+.++.|+++.|.+.. + ..+..+++|+.||+|+|.++ .+..+=..+.++++|
T Consensus 282 TWq~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~~-v-~nLa~L~~L~~LDLS~N~Ls-~~~Gwh~KLGNIKtL 357 (490)
T KOG1259|consen 282 TWQELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIRT-V-QNLAELPQLQLLDLSGNLLA-ECVGWHLKLGNIKTL 357 (490)
T ss_pred hHhhhhhccccccchh-hhhhhhhhccceeEEeccccceee-e-hhhhhcccceEeecccchhH-hhhhhHhhhcCEeee
Confidence 3456788888888876 555666667788888888888763 2 23677788888888888777 344444567788888
Q ss_pred eCCCCcCCcCCChhhhcCCCCCeeeCCCCCCCCCCC-ccccCCCCCCeEECcCCCCccc
Q 047332 549 DLSNNQFGHKIPIELEKLIHLSELDLSYNFLGEEIP-FQICNVKSLEKLNLCHNNLLGS 606 (614)
Q Consensus 549 ~l~~n~~~~~~p~~l~~l~~L~~L~L~~n~~~~~~p-~~l~~l~sL~~L~l~~n~l~~~ 606 (614)
.+++|.+-.. ..++.+-+|..||+++|+|...-. ..++++|.|+.+.+.+||+.+.
T Consensus 358 ~La~N~iE~L--SGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~~ 414 (490)
T KOG1259|consen 358 KLAQNKIETL--SGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAGS 414 (490)
T ss_pred ehhhhhHhhh--hhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCcccc
Confidence 8888887322 456677788888888888754421 3467788888888888888754
No 27
>PLN03150 hypothetical protein; Provisional
Probab=99.14 E-value=1e-10 Score=126.03 Aligned_cols=106 Identities=35% Similarity=0.574 Sum_probs=54.5
Q ss_pred CCEEeCCCCcCccccchhccCCCCCCEeeccCCccccCccccccCCCCCCEEeCCCCcCcccCCccccccCCCCEEeCCC
Q 047332 473 LQVLDLSSNSIVGEIPVQLGKLFSLNKLILNLNQLSGGMPLELGSLTELQYLDLSANKLKSSIPKSIGNLLRLRYLDLSN 552 (614)
Q Consensus 473 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~l~~ 552 (614)
++.|+|++|.+.+.+|..+..+++|+.|+|++|.+.|.+|..+..+++|+.|++++|.+.+.+|+.+..+++|+.|++++
T Consensus 420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~ 499 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNG 499 (623)
T ss_pred EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcC
Confidence 44455555555555555555555555555555555555555555555555555555555555555555555555555555
Q ss_pred CcCCcCCChhhhcC-CCCCeeeCCCCC
Q 047332 553 NQFGHKIPIELEKL-IHLSELDLSYNF 578 (614)
Q Consensus 553 n~~~~~~p~~l~~l-~~L~~L~L~~n~ 578 (614)
|++++.+|..+... .++..+++.+|.
T Consensus 500 N~l~g~iP~~l~~~~~~~~~l~~~~N~ 526 (623)
T PLN03150 500 NSLSGRVPAALGGRLLHRASFNFTDNA 526 (623)
T ss_pred CcccccCChHHhhccccCceEEecCCc
Confidence 55555555444432 234445555443
No 28
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.11 E-value=1.9e-12 Score=128.20 Aligned_cols=195 Identities=30% Similarity=0.398 Sum_probs=161.5
Q ss_pred CCCCcEEEccCCcCCcccccccCCCCCCCEEECcCcccccccCccccCCCCCcEEEcccCcccccCCccCCCCCCCCEEe
Q 047332 398 LTSVERVLLNQNNLSGKVYEAFGDHPNLTFLNLSQNNFCGEISFNWRNFPKLGTFIVSVNNISGSIPPEIGDSPKLQVLD 477 (614)
Q Consensus 398 ~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ 477 (614)
+.--...+++.|++. +++..+..|..|+.+.++.|.+. .++..+..+..|+.++++.|+++ .+|..++.++ |+.|-
T Consensus 74 ltdt~~aDlsrNR~~-elp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~lp-Lkvli 149 (722)
T KOG0532|consen 74 LTDTVFADLSRNRFS-ELPEEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGLCDLP-LKVLI 149 (722)
T ss_pred ccchhhhhccccccc-cCchHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChhhhcCc-ceeEE
Confidence 344456788888887 66777778888999999988887 56777888999999999999987 6777777776 89999
Q ss_pred CCCCcCccccchhccCCCCCCEeeccCCccccCccccccCCCCCCEEeCCCCcCcccCCccccccCCCCEEeCCCCcCCc
Q 047332 478 LSSNSIVGEIPVQLGKLFSLNKLILNLNQLSGGMPLELGSLTELQYLDLSANKLKSSIPKSIGNLLRLRYLDLSNNQFGH 557 (614)
Q Consensus 478 l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~ 557 (614)
+++|+++ .+|..++....|..|+.+.|.+. .+|..+.++.+|+.|.+..|.+. .+|+.+..+ .|.+||+++|++ .
T Consensus 150 ~sNNkl~-~lp~~ig~~~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~-~lp~El~~L-pLi~lDfScNki-s 224 (722)
T KOG0532|consen 150 VSNNKLT-SLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLE-DLPEELCSL-PLIRLDFSCNKI-S 224 (722)
T ss_pred EecCccc-cCCcccccchhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhh-hCCHHHhCC-ceeeeecccCce-e
Confidence 9999987 88888888899999999999988 67778899999999999999988 677777755 588999999999 5
Q ss_pred CCChhhhcCCCCCeeeCCCCCCCCCCCccc---cCCCCCCeEECcCCC
Q 047332 558 KIPIELEKLIHLSELDLSYNFLGEEIPFQI---CNVKSLEKLNLCHNN 602 (614)
Q Consensus 558 ~~p~~l~~l~~L~~L~L~~n~~~~~~p~~l---~~l~sL~~L~l~~n~ 602 (614)
.+|..|.+|..|++|-|.+|++.. .|..+ +...-.++|++.-|+
T Consensus 225 ~iPv~fr~m~~Lq~l~LenNPLqS-PPAqIC~kGkVHIFKyL~~qA~q 271 (722)
T KOG0532|consen 225 YLPVDFRKMRHLQVLQLENNPLQS-PPAQICEKGKVHIFKYLSTQACQ 271 (722)
T ss_pred ecchhhhhhhhheeeeeccCCCCC-ChHHHHhccceeeeeeecchhcc
Confidence 789999999999999999999954 45443 346678888888885
No 29
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.10 E-value=1.1e-10 Score=120.20 Aligned_cols=198 Identities=36% Similarity=0.489 Sum_probs=104.2
Q ss_pred EEECcCCCCCCCCCccccCCCCCcEEEccCCcCCcccccccCCC-CCCCEEECcCcccccccCccccCCCCCcEEEcccC
Q 047332 379 LLNMCENHLSGPIPKSFKNLTSVERVLLNQNNLSGKVYEAFGDH-PNLTFLNLSQNNFCGEISFNWRNFPKLGTFIVSVN 457 (614)
Q Consensus 379 ~L~ls~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~-~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~ 457 (614)
.++...+.+.... ......+.++.+++.+|.++.. +...... ++|+.|++++|.+.. ++..+..++.|+.|++++|
T Consensus 97 ~l~~~~~~~~~~~-~~~~~~~~l~~L~l~~n~i~~i-~~~~~~~~~nL~~L~l~~N~i~~-l~~~~~~l~~L~~L~l~~N 173 (394)
T COG4886 97 SLDLNLNRLRSNI-SELLELTNLTSLDLDNNNITDI-PPLIGLLKSNLKELDLSDNKIES-LPSPLRNLPNLKNLDLSFN 173 (394)
T ss_pred eeeccccccccCc-hhhhcccceeEEecCCcccccC-ccccccchhhcccccccccchhh-hhhhhhccccccccccCCc
Confidence 4555555553221 2233345667777777666533 2223333 266667777666652 2233455666666666666
Q ss_pred cccccCCccCCCCCCCCEEeCCCCcCccccchhccCCCCCCEeeccCCccccCccccccCCCCCCEEeCCCCcCcccCCc
Q 047332 458 NISGSIPPEIGDSPKLQVLDLSSNSIVGEIPVQLGKLFSLNKLILNLNQLSGGMPLELGSLTELQYLDLSANKLKSSIPK 537 (614)
Q Consensus 458 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~ 537 (614)
++. .++......+.|+.|++++|++. .+|........|+++.+++|... ..+..+..+.++..+.+.+|++. ..+.
T Consensus 174 ~l~-~l~~~~~~~~~L~~L~ls~N~i~-~l~~~~~~~~~L~~l~~~~N~~~-~~~~~~~~~~~l~~l~l~~n~~~-~~~~ 249 (394)
T COG4886 174 DLS-DLPKLLSNLSNLNNLDLSGNKIS-DLPPEIELLSALEELDLSNNSII-ELLSSLSNLKNLSGLELSNNKLE-DLPE 249 (394)
T ss_pred hhh-hhhhhhhhhhhhhheeccCCccc-cCchhhhhhhhhhhhhhcCCcce-ecchhhhhcccccccccCCceee-eccc
Confidence 665 33333334555666666666665 44444344445666666666432 23444555555555555555554 2244
Q ss_pred cccccCCCCEEeCCCCcCCcCCChhhhcCCCCCeeeCCCCCCCCCCCc
Q 047332 538 SIGNLLRLRYLDLSNNQFGHKIPIELEKLIHLSELDLSYNFLGEEIPF 585 (614)
Q Consensus 538 ~l~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~ 585 (614)
.++.+++++.|++++|.++...+ ++.+..++.|++++|.+...+|.
T Consensus 250 ~~~~l~~l~~L~~s~n~i~~i~~--~~~~~~l~~L~~s~n~~~~~~~~ 295 (394)
T COG4886 250 SIGNLSNLETLDLSNNQISSISS--LGSLTNLRELDLSGNSLSNALPL 295 (394)
T ss_pred hhccccccceecccccccccccc--ccccCccCEEeccCccccccchh
Confidence 55555556666666666543322 55555666666666655554443
No 30
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.08 E-value=2.3e-12 Score=127.52 Aligned_cols=194 Identities=31% Similarity=0.443 Sum_probs=161.4
Q ss_pred CCCCEEECcCCCCCCCCCccccCCCCCcEEEccCCcCCcccccccCCCCCCCEEECcCcccccccCccccCCCCCcEEEc
Q 047332 375 TGLLLLNMCENHLSGPIPKSFKNLTSVERVLLNQNNLSGKVYEAFGDHPNLTFLNLSQNNFCGEISFNWRNFPKLGTFIV 454 (614)
Q Consensus 375 ~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l 454 (614)
..-...|++.|++. .+|..+..+..|+.+.++.|.+. .++..+.++..|++++++.|+++ ..|..+..+ -|+.|.+
T Consensus 75 tdt~~aDlsrNR~~-elp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~l-pLkvli~ 150 (722)
T KOG0532|consen 75 TDTVFADLSRNRFS-ELPEEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGLCDL-PLKVLIV 150 (722)
T ss_pred cchhhhhccccccc-cCchHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChhhhcC-cceeEEE
Confidence 34456788999987 67778888888999999988876 67788889999999999999987 344444444 4889999
Q ss_pred ccCcccccCCccCCCCCCCCEEeCCCCcCccccchhccCCCCCCEeeccCCccccCccccccCCCCCCEEeCCCCcCccc
Q 047332 455 SVNNISGSIPPEIGDSPKLQVLDLSSNSIVGEIPVQLGKLFSLNKLILNLNQLSGGMPLELGSLTELQYLDLSANKLKSS 534 (614)
Q Consensus 455 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~ls~n~l~~~ 534 (614)
++|+++ .+|+.++..+.|..||.+.|.+. .+|..++++.+|+.|++..|.+. .+|..+. .-.|..||+|.|.++ .
T Consensus 151 sNNkl~-~lp~~ig~~~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~-~lp~El~-~LpLi~lDfScNkis-~ 225 (722)
T KOG0532|consen 151 SNNKLT-SLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLE-DLPEELC-SLPLIRLDFSCNKIS-Y 225 (722)
T ss_pred ecCccc-cCCcccccchhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhh-hCCHHHh-CCceeeeecccCcee-e
Confidence 999998 78888888999999999999998 78889999999999999999998 5666666 456999999999998 8
Q ss_pred CCccccccCCCCEEeCCCCcCCcCCChhhhcC---CCCCeeeCCCCC
Q 047332 535 IPKSIGNLLRLRYLDLSNNQFGHKIPIELEKL---IHLSELDLSYNF 578 (614)
Q Consensus 535 ~~~~l~~l~~L~~L~l~~n~~~~~~p~~l~~l---~~L~~L~L~~n~ 578 (614)
+|-.|..|+.|++|-|.+|++ ...|.++... .=-++|+..-|.
T Consensus 226 iPv~fr~m~~Lq~l~LenNPL-qSPPAqIC~kGkVHIFKyL~~qA~q 271 (722)
T KOG0532|consen 226 LPVDFRKMRHLQVLQLENNPL-QSPPAQICEKGKVHIFKYLSTQACQ 271 (722)
T ss_pred cchhhhhhhhheeeeeccCCC-CCChHHHHhccceeeeeeecchhcc
Confidence 999999999999999999999 5667665432 235678888884
No 31
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.08 E-value=2.1e-11 Score=117.21 Aligned_cols=211 Identities=26% Similarity=0.264 Sum_probs=137.8
Q ss_pred cCCCCCCEEECcCCCCCCCCC-ccccCCCCCcEEEccCCcCCcc--cccccCCCCCCCEEECcCcccccccCccc-cCCC
Q 047332 372 GNLTGLLLLNMCENHLSGPIP-KSFKNLTSVERVLLNQNNLSGK--VYEAFGDHPNLTFLNLSQNNFCGEISFNW-RNFP 447 (614)
Q Consensus 372 ~~l~~L~~L~ls~n~l~~~~~-~~~~~~~~L~~L~l~~n~~~~~--~~~~~~~~~~L~~L~l~~~~~~~~~~~~~-~~~~ 447 (614)
+++.+|+.+.+.++.+..... .....|++++.|+++.|-+... +......+|+|+.|+++.|.+........ ..++
T Consensus 118 sn~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~ 197 (505)
T KOG3207|consen 118 SNLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLS 197 (505)
T ss_pred hhHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhh
Confidence 346678888888877653221 3567788888999988866532 23344678888999998888753332221 2477
Q ss_pred CCcEEEcccCccccc-CCccCCCCCCCCEEeCCCCcCccccchhccCCCCCCEeeccCCccccCc-cccccCCCCCCEEe
Q 047332 448 KLGTFIVSVNNISGS-IPPEIGDSPKLQVLDLSSNSIVGEIPVQLGKLFSLNKLILNLNQLSGGM-PLELGSLTELQYLD 525 (614)
Q Consensus 448 ~L~~L~l~~~~~~~~-~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~-~~~~~~l~~L~~L~ 525 (614)
+|+.|.++.|.++.. +...+..+|+|+.|++..|............+..|++|+|++|.+.... ......++.|+.|+
T Consensus 198 ~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Ln 277 (505)
T KOG3207|consen 198 HLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLN 277 (505)
T ss_pred hhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhhh
Confidence 888888888888732 2223446788888888888533233333445667888888888776331 13456777888888
Q ss_pred CCCCcCccc-CCcc-----ccccCCCCEEeCCCCcCCcC-CChhhhcCCCCCeeeCCCCCCCCC
Q 047332 526 LSANKLKSS-IPKS-----IGNLLRLRYLDLSNNQFGHK-IPIELEKLIHLSELDLSYNFLGEE 582 (614)
Q Consensus 526 ls~n~l~~~-~~~~-----l~~l~~L~~L~l~~n~~~~~-~p~~l~~l~~L~~L~L~~n~~~~~ 582 (614)
++.|.+.+. .|+. ...+++|+.|++..|++.+- .-..+..+++|+.|.+..|.+...
T Consensus 278 ls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~ln~e 341 (505)
T KOG3207|consen 278 LSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNYLNKE 341 (505)
T ss_pred ccccCcchhcCCCccchhhhcccccceeeecccCccccccccchhhccchhhhhhccccccccc
Confidence 888877654 2332 34567888888888887432 114455667778888777777544
No 32
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.07 E-value=2.1e-11 Score=117.17 Aligned_cols=210 Identities=23% Similarity=0.257 Sum_probs=155.1
Q ss_pred cCCCCCcEEEcccccCCccCC-ccccCCCCCCEEECcCCCCCC--CCCccccCCCCCcEEEccCCcCCcccccc-cCCCC
Q 047332 348 RYLKSLSELELCKNHLSGVIP-HSIGNLTGLLLLNMCENHLSG--PIPKSFKNLTSVERVLLNQNNLSGKVYEA-FGDHP 423 (614)
Q Consensus 348 ~~~~~L~~L~l~~n~~~~~~~-~~~~~l~~L~~L~ls~n~l~~--~~~~~~~~~~~L~~L~l~~n~~~~~~~~~-~~~~~ 423 (614)
..+.+|+++.+.++.+..... .....+++++.||++.|-+.. .+......+++|+.|+++.|++....... -..++
T Consensus 118 sn~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~ 197 (505)
T KOG3207|consen 118 SNLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLS 197 (505)
T ss_pred hhHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhh
Confidence 456789999999988773322 355678999999999997764 23344577899999999999876333222 23578
Q ss_pred CCCEEECcCcccccc-cCccccCCCCCcEEEcccCcccccCCccCCCCCCCCEEeCCCCcCcccc-chhccCCCCCCEee
Q 047332 424 NLTFLNLSQNNFCGE-ISFNWRNFPKLGTFIVSVNNISGSIPPEIGDSPKLQVLDLSSNSIVGEI-PVQLGKLFSLNKLI 501 (614)
Q Consensus 424 ~L~~L~l~~~~~~~~-~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~~~~L~~L~ 501 (614)
.|+.|.++.|.++.. +......||+|+.|++..|...........-+..|++|||++|.+.+.. ....+.++.|+.|+
T Consensus 198 ~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Ln 277 (505)
T KOG3207|consen 198 HLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLN 277 (505)
T ss_pred hhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhhh
Confidence 999999999999854 3444667999999999999633232223344678999999999987332 24567889999999
Q ss_pred ccCCccccC-cccc-----ccCCCCCCEEeCCCCcCcccCC--ccccccCCCCEEeCCCCcCCcC
Q 047332 502 LNLNQLSGG-MPLE-----LGSLTELQYLDLSANKLKSSIP--KSIGNLLRLRYLDLSNNQFGHK 558 (614)
Q Consensus 502 l~~n~~~~~-~~~~-----~~~l~~L~~L~ls~n~l~~~~~--~~l~~l~~L~~L~l~~n~~~~~ 558 (614)
++.|.+... .|+. ....++|+.|+++.|++.+ ++ ..+..+++|+.|.+..|.++.+
T Consensus 278 ls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~-w~sl~~l~~l~nlk~l~~~~n~ln~e 341 (505)
T KOG3207|consen 278 LSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRD-WRSLNHLRTLENLKHLRITLNYLNKE 341 (505)
T ss_pred ccccCcchhcCCCccchhhhcccccceeeecccCcccc-ccccchhhccchhhhhhccccccccc
Confidence 999988754 3333 3567899999999999862 22 3456678899999999988654
No 33
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.06 E-value=1e-10 Score=128.60 Aligned_cols=105 Identities=28% Similarity=0.338 Sum_probs=61.1
Q ss_pred CCcEEECCCCC--CCccCcccccCCCCCCEEeCCCCCCCCCCCcCCCCCCCCCEEEcccccCCCCCCccccCCCCCcEEE
Q 047332 88 HLVQLNLSFNI--FFGIIPPQIGNLSKLQYLDLGSNQLSGVIPPEIGHLNQLRILYFDVNQLHGSIPPEIGQLSLINVLA 165 (614)
Q Consensus 88 ~L~~L~Ls~~~--~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~ 165 (614)
.|++|-+.+|. +.......|..++.|++|||++|.--+.+|..++.+-+||+|+++++.+. .+|..+.+++.|.+|+
T Consensus 546 ~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~-~LP~~l~~Lk~L~~Ln 624 (889)
T KOG4658|consen 546 KLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGIS-HLPSGLGNLKKLIYLN 624 (889)
T ss_pred ccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCcc-ccchHHHHHHhhheec
Confidence 46666665553 33333334566666666666665554566666666666666666666665 5666666666666666
Q ss_pred eccccCCCCCCcccCCCCCCcEEEeecC
Q 047332 166 LCHNNLYGSIPSSLGNLSNLANFYFNNN 193 (614)
Q Consensus 166 l~~~~l~~~~~~~l~~l~~L~~L~l~~~ 193 (614)
+..+.....+|.....+.+|++|.+...
T Consensus 625 l~~~~~l~~~~~i~~~L~~Lr~L~l~~s 652 (889)
T KOG4658|consen 625 LEVTGRLESIPGILLELQSLRVLRLPRS 652 (889)
T ss_pred cccccccccccchhhhcccccEEEeecc
Confidence 6665444344444445666666665543
No 34
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.05 E-value=7.9e-11 Score=103.56 Aligned_cols=106 Identities=35% Similarity=0.349 Sum_probs=22.9
Q ss_pred CCCCcEEEcccCcccccCCccCC-CCCCCCEEeCCCCcCccccchhccCCCCCCEeeccCCccccCccccc-cCCCCCCE
Q 047332 446 FPKLGTFIVSVNNISGSIPPEIG-DSPKLQVLDLSSNSIVGEIPVQLGKLFSLNKLILNLNQLSGGMPLEL-GSLTELQY 523 (614)
Q Consensus 446 ~~~L~~L~l~~~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~-~~l~~L~~ 523 (614)
+.++++|++.+|.++.. +.+. .+.+|+.|++++|.+.. + +.+..++.|++|++++|.++.. ...+ ..+++|++
T Consensus 18 ~~~~~~L~L~~n~I~~I--e~L~~~l~~L~~L~Ls~N~I~~-l-~~l~~L~~L~~L~L~~N~I~~i-~~~l~~~lp~L~~ 92 (175)
T PF14580_consen 18 PVKLRELNLRGNQISTI--ENLGATLDKLEVLDLSNNQITK-L-EGLPGLPRLKTLDLSNNRISSI-SEGLDKNLPNLQE 92 (175)
T ss_dssp --------------------S--TT-TT--EEE-TTS--S----TT----TT--EEE--SS---S--CHHHHHH-TT--E
T ss_pred ccccccccccccccccc--cchhhhhcCCCEEECCCCCCcc-c-cCccChhhhhhcccCCCCCCcc-ccchHHhCCcCCE
Confidence 33455555555555421 1222 24455555555555542 1 1244445555555555555422 1122 23455555
Q ss_pred EeCCCCcCcccC-CccccccCCCCEEeCCCCcCC
Q 047332 524 LDLSANKLKSSI-PKSIGNLLRLRYLDLSNNQFG 556 (614)
Q Consensus 524 L~ls~n~l~~~~-~~~l~~l~~L~~L~l~~n~~~ 556 (614)
|++++|.+.... -..+..+++|+.|++.+|+++
T Consensus 93 L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~ 126 (175)
T PF14580_consen 93 LYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVC 126 (175)
T ss_dssp EE-TTS---SCCCCGGGGG-TT--EEE-TT-GGG
T ss_pred EECcCCcCCChHHhHHHHcCCCcceeeccCCccc
Confidence 555555443211 123444455555555555543
No 35
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.03 E-value=3.4e-10 Score=116.65 Aligned_cols=174 Identities=42% Similarity=0.558 Sum_probs=70.2
Q ss_pred CCCCEEEcccccCCCCCCccccCCC-CCcEEEeccccCCCCCCcccCCCCCCcEEEeecCCCcccCCccccCCCCCCeee
Q 047332 135 NQLRILYFDVNQLHGSIPPEIGQLS-LINVLALCHNNLYGSIPSSLGNLSNLANFYFNNNSLFDSIPLVLGNLNSLSTMD 213 (614)
Q Consensus 135 ~~L~~L~l~~n~~~~~~~~~~~~l~-~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~ 213 (614)
+.++.|++.+|.++ .++....... +|+.|++++|.+. .+|..+..+++|+.|++++|++... +...+..+.|+.|+
T Consensus 116 ~~l~~L~l~~n~i~-~i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N~l~~l-~~~~~~~~~L~~L~ 192 (394)
T COG4886 116 TNLTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFNDLSDL-PKLLSNLSNLNNLD 192 (394)
T ss_pred cceeEEecCCcccc-cCccccccchhhcccccccccchh-hhhhhhhccccccccccCCchhhhh-hhhhhhhhhhhhee
Confidence 44444444444444 3333333332 4444444444443 2222334444444444444444322 11122334444444
Q ss_pred ccCccCCccCCccccCCCCCCeEEcccCccccccchhccCCCCCCEEeccCCcCccccCccccCCCCCCEEecCCCcccc
Q 047332 214 LSQNQFSGSIPLSLGNLSNLGILYLYSNSFSGSIPSIIGNLKSLLQLDLSENQLIGSIPLSFGNLSRLTLMSLFNNLLSG 293 (614)
Q Consensus 214 l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~~~~~~ 293 (614)
+++|++. .+|........|+++.+++|... ..+..+..+..+..+.+.+|++. ..+..+..++.++.|++++|.++.
T Consensus 193 ls~N~i~-~l~~~~~~~~~L~~l~~~~N~~~-~~~~~~~~~~~l~~l~l~~n~~~-~~~~~~~~l~~l~~L~~s~n~i~~ 269 (394)
T COG4886 193 LSGNKIS-DLPPEIELLSALEELDLSNNSII-ELLSSLSNLKNLSGLELSNNKLE-DLPESIGNLSNLETLDLSNNQISS 269 (394)
T ss_pred ccCCccc-cCchhhhhhhhhhhhhhcCCcce-ecchhhhhcccccccccCCceee-eccchhccccccceeccccccccc
Confidence 4444444 23333223333444444444322 22333444444444444444433 113334444444444444444442
Q ss_pred cCCccCCCCCCCCEeecCCCccc
Q 047332 294 SLPPILGNLKSLSALGLHINQLS 316 (614)
Q Consensus 294 ~~~~~l~~l~~L~~L~L~~n~l~ 316 (614)
. +. +....+++.++++++.+.
T Consensus 270 i-~~-~~~~~~l~~L~~s~n~~~ 290 (394)
T COG4886 270 I-SS-LGSLTNLRELDLSGNSLS 290 (394)
T ss_pred c-cc-ccccCccCEEeccCcccc
Confidence 2 11 344444444444444444
No 36
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=99.03 E-value=6e-11 Score=108.46 Aligned_cols=127 Identities=24% Similarity=0.283 Sum_probs=52.4
Q ss_pred CCCEEecCCCcccccCCccCCCCCCCCEeecCCCcccccCCccccCCCCCCEEEccCCcccccCcccccCCCCCcEEEcc
Q 047332 280 RLTLMSLFNNLLSGSLPPILGNLKSLSALGLHINQLSGVIPSSIGNLSSLRALYLYNNGLCGFVPEEIRYLKSLSELELC 359 (614)
Q Consensus 280 ~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~ 359 (614)
.|+.+|+++|.|+ .+.+.+.-.|.++.|+++.|.+... ..++.+++|+.|++++|.++.. ..+-..+-++++|.++
T Consensus 285 ~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~~v--~nLa~L~~L~~LDLS~N~Ls~~-~Gwh~KLGNIKtL~La 360 (490)
T KOG1259|consen 285 ELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIRTV--QNLAELPQLQLLDLSGNLLAEC-VGWHLKLGNIKTLKLA 360 (490)
T ss_pred hhhhccccccchh-hhhhhhhhccceeEEeccccceeee--hhhhhcccceEeecccchhHhh-hhhHhhhcCEeeeehh
Confidence 3444444444443 2222333344444444444444422 1234444444444444444321 1122233344444444
Q ss_pred cccCCccCCccccCCCCCCEEECcCCCCCCC-CCccccCCCCCcEEEccCCcCC
Q 047332 360 KNHLSGVIPHSIGNLTGLLLLNMCENHLSGP-IPKSFKNLTSVERVLLNQNNLS 412 (614)
Q Consensus 360 ~n~~~~~~~~~~~~l~~L~~L~ls~n~l~~~-~~~~~~~~~~L~~L~l~~n~~~ 412 (614)
+|.+... ..+..+-+|..||+++|++... --..+++++.|+.+.+.+|.+.
T Consensus 361 ~N~iE~L--SGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~ 412 (490)
T KOG1259|consen 361 QNKIETL--SGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLA 412 (490)
T ss_pred hhhHhhh--hhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCcc
Confidence 4444321 1233333444455555444321 1123455555555555555544
No 37
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.98 E-value=3.7e-10 Score=124.31 Aligned_cols=61 Identities=30% Similarity=0.469 Sum_probs=25.4
Q ss_pred CCCCCCCCEEEcccccCCCCCCccccCCCCCcEEEeccccCCCCCCcccCCCCCCcEEEeec
Q 047332 131 IGHLNQLRILYFDVNQLHGSIPPEIGQLSLINVLALCHNNLYGSIPSSLGNLSNLANFYFNN 192 (614)
Q Consensus 131 l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~ 192 (614)
|..++.|+.||+++|.-.+.+|..++.+-+||+|+++++.+. .+|..+.++..|.+|++..
T Consensus 567 f~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~-~LP~~l~~Lk~L~~Lnl~~ 627 (889)
T KOG4658|consen 567 FRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGIS-HLPSGLGNLKKLIYLNLEV 627 (889)
T ss_pred HhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCcc-ccchHHHHHHhhheecccc
Confidence 333444444444443333344444444444444444444433 3344444444444444443
No 38
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.98 E-value=5.5e-10 Score=98.28 Aligned_cols=129 Identities=35% Similarity=0.359 Sum_probs=53.3
Q ss_pred CCCCCCCCEEeCCCCcCccccchhcc-CCCCCCEeeccCCccccCccccccCCCCCCEEeCCCCcCcccCCccc-cccCC
Q 047332 467 IGDSPKLQVLDLSSNSIVGEIPVQLG-KLFSLNKLILNLNQLSGGMPLELGSLTELQYLDLSANKLKSSIPKSI-GNLLR 544 (614)
Q Consensus 467 ~~~~~~L~~L~l~~~~~~~~~~~~~~-~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~l-~~l~~ 544 (614)
+.++..+++|++++|.+. .+. .++ .+.+|+.|++++|.++.. +.+..++.|++|++++|.++. +.+.+ ..+++
T Consensus 15 ~~n~~~~~~L~L~~n~I~-~Ie-~L~~~l~~L~~L~Ls~N~I~~l--~~l~~L~~L~~L~L~~N~I~~-i~~~l~~~lp~ 89 (175)
T PF14580_consen 15 YNNPVKLRELNLRGNQIS-TIE-NLGATLDKLEVLDLSNNQITKL--EGLPGLPRLKTLDLSNNRISS-ISEGLDKNLPN 89 (175)
T ss_dssp -----------------------S--TT-TT--EEE-TTS--S----TT----TT--EEE--SS---S--CHHHHHH-TT
T ss_pred cccccccccccccccccc-ccc-chhhhhcCCCEEECCCCCCccc--cCccChhhhhhcccCCCCCCc-cccchHHhCCc
Confidence 344567899999999997 333 454 578999999999999843 357889999999999999984 44445 46899
Q ss_pred CCEEeCCCCcCCcCC-ChhhhcCCCCCeeeCCCCCCCCCCC---ccccCCCCCCeEECcC
Q 047332 545 LRYLDLSNNQFGHKI-PIELEKLIHLSELDLSYNFLGEEIP---FQICNVKSLEKLNLCH 600 (614)
Q Consensus 545 L~~L~l~~n~~~~~~-p~~l~~l~~L~~L~L~~n~~~~~~p---~~l~~l~sL~~L~l~~ 600 (614)
|++|++++|++.... -..+..+++|+.|++.+|++....- ..+..+|+|+.||-..
T Consensus 90 L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~~~ 149 (175)
T PF14580_consen 90 LQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDGQD 149 (175)
T ss_dssp --EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETTEE
T ss_pred CCEEECcCCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCCEE
Confidence 999999999996632 2567889999999999999975421 1345689999987543
No 39
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.77 E-value=3.2e-09 Score=76.65 Aligned_cols=59 Identities=39% Similarity=0.455 Sum_probs=29.0
Q ss_pred CCCEEeCCCCcCCcCCChhhhcCCCCCeeeCCCCCCCCCCCccccCCCCCCeEECcCCC
Q 047332 544 RLRYLDLSNNQFGHKIPIELEKLIHLSELDLSYNFLGEEIPFQICNVKSLEKLNLCHNN 602 (614)
Q Consensus 544 ~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~sL~~L~l~~n~ 602 (614)
+|++|++++|+++...+..|.++++|++|++++|++....|..|..+++|++|++++|+
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence 34455555555444434444455555555555555544444444555555555555544
No 40
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.76 E-value=3.5e-09 Score=76.40 Aligned_cols=61 Identities=46% Similarity=0.516 Sum_probs=42.4
Q ss_pred CCCCEEeCCCCcCcccCCccccccCCCCEEeCCCCcCCcCCChhhhcCCCCCeeeCCCCCC
Q 047332 519 TELQYLDLSANKLKSSIPKSIGNLLRLRYLDLSNNQFGHKIPIELEKLIHLSELDLSYNFL 579 (614)
Q Consensus 519 ~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~L~~n~~ 579 (614)
|+|++|++++|.+....+..|..+++|++|++++|.++...|..|.++++|++|++++|++
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 4566777777777755556677777777777777777666666777777777777777754
No 41
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.75 E-value=1e-09 Score=113.22 Aligned_cols=105 Identities=25% Similarity=0.349 Sum_probs=45.1
Q ss_pred CCCCcEEECCCCCCCccCcccccCCCCCCEEeCCCCCCCCCCCcCCCCCCCCCEEEcccccCCCCCCccccCCCCCcEEE
Q 047332 86 FPHLVQLNLSFNIFFGIIPPQIGNLSKLQYLDLGSNQLSGVIPPEIGHLNQLRILYFDVNQLHGSIPPEIGQLSLINVLA 165 (614)
Q Consensus 86 l~~L~~L~Ls~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~ 165 (614)
+..++.+++..|.+.. +-..+..+++|++|++..|.+... ...+..+++|++|++++|.++.. ..+..++.|+.|+
T Consensus 71 l~~l~~l~l~~n~i~~-~~~~l~~~~~l~~l~l~~n~i~~i-~~~l~~~~~L~~L~ls~N~I~~i--~~l~~l~~L~~L~ 146 (414)
T KOG0531|consen 71 LTSLKELNLRQNLIAK-ILNHLSKLKSLEALDLYDNKIEKI-ENLLSSLVNLQVLDLSFNKITKL--EGLSTLTLLKELN 146 (414)
T ss_pred hHhHHhhccchhhhhh-hhcccccccceeeeeccccchhhc-ccchhhhhcchheeccccccccc--cchhhccchhhhe
Confidence 3344444444444433 112244445555555555555422 21244455555555555554422 2233344455555
Q ss_pred eccccCCCCCCcccCCCCCCcEEEeecCCCc
Q 047332 166 LCHNNLYGSIPSSLGNLSNLANFYFNNNSLF 196 (614)
Q Consensus 166 l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~ 196 (614)
+++|.++.. ..+..++.|+.+++++|.+.
T Consensus 147 l~~N~i~~~--~~~~~l~~L~~l~l~~n~i~ 175 (414)
T KOG0531|consen 147 LSGNLISDI--SGLESLKSLKLLDLSYNRIV 175 (414)
T ss_pred eccCcchhc--cCCccchhhhcccCCcchhh
Confidence 555544421 12233444444444444443
No 42
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.72 E-value=1.3e-09 Score=112.56 Aligned_cols=245 Identities=25% Similarity=0.287 Sum_probs=140.0
Q ss_pred CCCCCCEEEccCCcccccCcccccCCCCCcEEEcccccCCccCCccccCCCCCCEEECcCCCCCCCCCccccCCCCCcEE
Q 047332 325 NLSSLRALYLYNNGLCGFVPEEIRYLKSLSELELCKNHLSGVIPHSIGNLTGLLLLNMCENHLSGPIPKSFKNLTSVERV 404 (614)
Q Consensus 325 ~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L 404 (614)
.+..++.+.+..|.+... ...+..+++|+.+++.+|.+... ...+..+++|++|++++|.++.. ..+..++.|+.|
T Consensus 70 ~l~~l~~l~l~~n~i~~~-~~~l~~~~~l~~l~l~~n~i~~i-~~~l~~~~~L~~L~ls~N~I~~i--~~l~~l~~L~~L 145 (414)
T KOG0531|consen 70 SLTSLKELNLRQNLIAKI-LNHLSKLKSLEALDLYDNKIEKI-ENLLSSLVNLQVLDLSFNKITKL--EGLSTLTLLKEL 145 (414)
T ss_pred HhHhHHhhccchhhhhhh-hcccccccceeeeeccccchhhc-ccchhhhhcchheeccccccccc--cchhhccchhhh
Confidence 445666666777776652 23356677888888888888744 22256677888888888887754 335556667888
Q ss_pred EccCCcCCcccccccCCCCCCCEEECcCcccccccC-ccccCCCCCcEEEcccCcccccCCccCCCCCCCCEEeCCCCcC
Q 047332 405 LLNQNNLSGKVYEAFGDHPNLTFLNLSQNNFCGEIS-FNWRNFPKLGTFIVSVNNISGSIPPEIGDSPKLQVLDLSSNSI 483 (614)
Q Consensus 405 ~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 483 (614)
++.+|.+... ..+..++.|+.+++++|.+...-. . ...+.+++.+++.+|.+... ..+..+..+..+++..|.+
T Consensus 146 ~l~~N~i~~~--~~~~~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~~i--~~~~~~~~l~~~~l~~n~i 220 (414)
T KOG0531|consen 146 NLSGNLISDI--SGLESLKSLKLLDLSYNRIVDIENDE-LSELISLEELDLGGNSIREI--EGLDLLKKLVLLSLLDNKI 220 (414)
T ss_pred eeccCcchhc--cCCccchhhhcccCCcchhhhhhhhh-hhhccchHHHhccCCchhcc--cchHHHHHHHHhhcccccc
Confidence 8888877532 334446777777777777764433 2 35566666777777666422 2223334444446666665
Q ss_pred ccccchhccCCC--CCCEeeccCCccccCccccccCCCCCCEEeCCCCcCcccCCccccccCCCCEEeCCCCcCCcC---
Q 047332 484 VGEIPVQLGKLF--SLNKLILNLNQLSGGMPLELGSLTELQYLDLSANKLKSSIPKSIGNLLRLRYLDLSNNQFGHK--- 558 (614)
Q Consensus 484 ~~~~~~~~~~~~--~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~--- 558 (614)
...-+ +..+. .|+.+++++|++. ..+..+..+..+..|++.+|.+... ..+...+.+..+....+.+...
T Consensus 221 ~~~~~--l~~~~~~~L~~l~l~~n~i~-~~~~~~~~~~~l~~l~~~~n~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (414)
T KOG0531|consen 221 SKLEG--LNELVMLHLRELYLSGNRIS-RSPEGLENLKNLPVLDLSSNRISNL--EGLERLPKLSELWLNDNKLALSEAI 295 (414)
T ss_pred eeccC--cccchhHHHHHHhcccCccc-cccccccccccccccchhhcccccc--ccccccchHHHhccCcchhcchhhh
Confidence 42221 11122 2566666666665 2324455556666666666665533 2344445555555555554321
Q ss_pred CCh-hhhcCCCCCeeeCCCCCCCCCC
Q 047332 559 IPI-ELEKLIHLSELDLSYNFLGEEI 583 (614)
Q Consensus 559 ~p~-~l~~l~~L~~L~L~~n~~~~~~ 583 (614)
... .....+.+..+++..|.+....
T Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (414)
T KOG0531|consen 296 SQEYITSAAPTLVTLTLELNPIRKIS 321 (414)
T ss_pred hccccccccccccccccccCcccccc
Confidence 111 1334455666666666555443
No 43
>PF08263 LRRNT_2: Leucine rich repeat N-terminal domain; InterPro: IPR013210 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This domain is often found at the N terminus of tandem leucine rich repeats.; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1OGQ_A.
Probab=98.64 E-value=4e-08 Score=64.59 Aligned_cols=42 Identities=43% Similarity=0.970 Sum_probs=30.1
Q ss_pred hHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccceeeC
Q 047332 6 SKETFALLKWKRSLQNKNISLLSSWTLHPDNASNVPSYSKSKISPCAWLGISCN 59 (614)
Q Consensus 6 ~~~~~~l~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~c~w~~~~c~ 59 (614)
++|++||++||+++..+|.+.+.+|+ .+ ...+||.|.||.|+
T Consensus 2 ~~d~~aLl~~k~~l~~~~~~~l~~W~--~~----------~~~~~C~W~GV~Cd 43 (43)
T PF08263_consen 2 NQDRQALLAFKKSLNNDPSGVLSSWN--PS----------SDSDPCSWSGVTCD 43 (43)
T ss_dssp HHHHHHHHHHHHCTT-SC-CCCTT----TT------------S-CCCSTTEEE-
T ss_pred cHHHHHHHHHHHhcccccCcccccCC--Cc----------CCCCCeeeccEEeC
Confidence 68999999999999976678899998 31 02799999999995
No 44
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.48 E-value=2.6e-09 Score=109.14 Aligned_cols=127 Identities=35% Similarity=0.385 Sum_probs=98.7
Q ss_pred CCCCEEeCCCCcCccccchhccCCCCCCEeeccCCccccCccccccCCCCCCEEeCCCCcCcccCCc-cccccCCCCEEe
Q 047332 471 PKLQVLDLSSNSIVGEIPVQLGKLFSLNKLILNLNQLSGGMPLELGSLTELQYLDLSANKLKSSIPK-SIGNLLRLRYLD 549 (614)
Q Consensus 471 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~-~l~~l~~L~~L~ 549 (614)
..|...+.+.|++. .....+.-++.++.|+|++|+++.. +.+..|+.|++|||++|.+. .+|. .-..+. |+.|+
T Consensus 164 n~L~~a~fsyN~L~-~mD~SLqll~ale~LnLshNk~~~v--~~Lr~l~~LkhLDlsyN~L~-~vp~l~~~gc~-L~~L~ 238 (1096)
T KOG1859|consen 164 NKLATASFSYNRLV-LMDESLQLLPALESLNLSHNKFTKV--DNLRRLPKLKHLDLSYNCLR-HVPQLSMVGCK-LQLLN 238 (1096)
T ss_pred hhHhhhhcchhhHH-hHHHHHHHHHHhhhhccchhhhhhh--HHHHhcccccccccccchhc-cccccchhhhh-heeee
Confidence 34667777888776 5556677788999999999999843 37889999999999999998 4443 223444 99999
Q ss_pred CCCCcCCcCCChhhhcCCCCCeeeCCCCCCCCCCCc-cccCCCCCCeEECcCCCCc
Q 047332 550 LSNNQFGHKIPIELEKLIHLSELDLSYNFLGEEIPF-QICNVKSLEKLNLCHNNLL 604 (614)
Q Consensus 550 l~~n~~~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~-~l~~l~sL~~L~l~~n~l~ 604 (614)
+++|.++.. ..+.++.+|+.||+++|-+.+.-.- -+..+.+|+.|++.+||+-
T Consensus 239 lrnN~l~tL--~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~ 292 (1096)
T KOG1859|consen 239 LRNNALTTL--RGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLC 292 (1096)
T ss_pred ecccHHHhh--hhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccc
Confidence 999999654 4678999999999999977665221 2456789999999999974
No 45
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.48 E-value=3e-09 Score=97.56 Aligned_cols=176 Identities=23% Similarity=0.174 Sum_probs=92.2
Q ss_pred CCCEEECcCcccccc-cCccccCCCCCcEEEcccCcccccCCccCCCCCCCCEEeCCCCcCcccc--chhccCCCCCCEe
Q 047332 424 NLTFLNLSQNNFCGE-ISFNWRNFPKLGTFIVSVNNISGSIPPEIGDSPKLQVLDLSSNSIVGEI--PVQLGKLFSLNKL 500 (614)
Q Consensus 424 ~L~~L~l~~~~~~~~-~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~--~~~~~~~~~L~~L 500 (614)
.|++||++...++-. ....+..|.+|+.|.+.++++.+.+...+..-.+|+.|+++.|.-..+. --.+.+|+.|.+|
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~L 265 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDEL 265 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhc
Confidence 466666666555422 2333455666666666666666555555555666667776665432121 2234566677777
Q ss_pred eccCCccccCcccc-cc-CCCCCCEEeCCCCc--Cccc-CCccccccCCCCEEeCCCCc-CCcCCChhhhcCCCCCeeeC
Q 047332 501 ILNLNQLSGGMPLE-LG-SLTELQYLDLSANK--LKSS-IPKSIGNLLRLRYLDLSNNQ-FGHKIPIELEKLIHLSELDL 574 (614)
Q Consensus 501 ~l~~n~~~~~~~~~-~~-~l~~L~~L~ls~n~--l~~~-~~~~l~~l~~L~~L~l~~n~-~~~~~p~~l~~l~~L~~L~L 574 (614)
++++|.+....... +. --++|+.|+++++. +... +..-...+++|..|||++|. ++...-..|-+++.|++|.+
T Consensus 266 NlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSl 345 (419)
T KOG2120|consen 266 NLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSL 345 (419)
T ss_pred CchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeeeh
Confidence 77777554321111 00 11456666666653 1111 11112346666677776553 33333344555666777777
Q ss_pred CCCCCCCCCCcc---ccCCCCCCeEECcCC
Q 047332 575 SYNFLGEEIPFQ---ICNVKSLEKLNLCHN 601 (614)
Q Consensus 575 ~~n~~~~~~p~~---l~~l~sL~~L~l~~n 601 (614)
++|.. .+|.. +.+.++|.+|++-+|
T Consensus 346 sRCY~--i~p~~~~~l~s~psl~yLdv~g~ 373 (419)
T KOG2120|consen 346 SRCYD--IIPETLLELNSKPSLVYLDVFGC 373 (419)
T ss_pred hhhcC--CChHHeeeeccCcceEEEEeccc
Confidence 66644 23332 345566666666665
No 46
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.39 E-value=2.2e-08 Score=81.22 Aligned_cols=137 Identities=24% Similarity=0.246 Sum_probs=99.2
Q ss_pred CCCEEeCCCCcCccccch---hccCCCCCCEeeccCCccccCccccccCCCCCCEEeCCCCcCcccCCccccccCCCCEE
Q 047332 472 KLQVLDLSSNSIVGEIPV---QLGKLFSLNKLILNLNQLSGGMPLELGSLTELQYLDLSANKLKSSIPKSIGNLLRLRYL 548 (614)
Q Consensus 472 ~L~~L~l~~~~~~~~~~~---~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L 548 (614)
.+..+++++|++. .++. .+.....|..+++++|.+....+..-...+.++.|++++|.++ .+|+.+..++.|+.|
T Consensus 28 E~h~ldLssc~lm-~i~davy~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~l 105 (177)
T KOG4579|consen 28 ELHFLDLSSCQLM-YIADAVYMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSL 105 (177)
T ss_pred Hhhhcccccchhh-HHHHHHHHHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhc
Confidence 4667888888875 3433 3445566777899999888544444456678999999999998 678889999999999
Q ss_pred eCCCCcCCcCCChhhhcCCCCCeeeCCCCCCCCCCCccccCCCCCCeEECcCCCCcccCCCCCC
Q 047332 549 DLSNNQFGHKIPIELEKLIHLSELDLSYNFLGEEIPFQICNVKSLEKLNLCHNNLLGSFQQKKD 612 (614)
Q Consensus 549 ~l~~n~~~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~sL~~L~l~~n~l~~~ip~~~~ 612 (614)
+++.|++. ..|..+..+.+|..|+..+|.+... |..+-.-+..-...+..+++.+.-|.+++
T Consensus 106 Nl~~N~l~-~~p~vi~~L~~l~~Lds~~na~~ei-d~dl~~s~~~al~~lgnepl~~~~~~klq 167 (177)
T KOG4579|consen 106 NLRFNPLN-AEPRVIAPLIKLDMLDSPENARAEI-DVDLFYSSLPALIKLGNEPLGDETKKKLQ 167 (177)
T ss_pred ccccCccc-cchHHHHHHHhHHHhcCCCCccccC-cHHHhccccHHHHHhcCCcccccCccccc
Confidence 99999994 5567777788999999998877543 33232223344455577888888877665
No 47
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.32 E-value=7.4e-09 Score=95.02 Aligned_cols=175 Identities=19% Similarity=0.142 Sum_probs=79.5
Q ss_pred CCEEECcCCCCCC-CCCccccCCCCCcEEEccCCcCCcccccccCCCCCCCEEECcCccccccc--CccccCCCCCcEEE
Q 047332 377 LLLLNMCENHLSG-PIPKSFKNLTSVERVLLNQNNLSGKVYEAFGDHPNLTFLNLSQNNFCGEI--SFNWRNFPKLGTFI 453 (614)
Q Consensus 377 L~~L~ls~n~l~~-~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~--~~~~~~~~~L~~L~ 453 (614)
|+++|++...++. .....+..|.+|+.|.+.++++.+.+...+..-.+|+.|+++.+.-..+. ...+.+|+.|..|+
T Consensus 187 lq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LN 266 (419)
T KOG2120|consen 187 LQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELN 266 (419)
T ss_pred hHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhcC
Confidence 5555555544432 12223455666666666666666555555556666666666655422111 12244455555555
Q ss_pred cccCcccccCCccC-C-CCCCCCEEeCCCCcCc---cccchhccCCCCCCEeeccCCccc-cCccccccCCCCCCEEeCC
Q 047332 454 VSVNNISGSIPPEI-G-DSPKLQVLDLSSNSIV---GEIPVQLGKLFSLNKLILNLNQLS-GGMPLELGSLTELQYLDLS 527 (614)
Q Consensus 454 l~~~~~~~~~~~~~-~-~~~~L~~L~l~~~~~~---~~~~~~~~~~~~L~~L~l~~n~~~-~~~~~~~~~l~~L~~L~ls 527 (614)
++-|.++...-..+ . --+.|+.|+++++.-. ..+......+++|.+|||++|... ......|-.++.|++|.++
T Consensus 267 lsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSls 346 (419)
T KOG2120|consen 267 LSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLS 346 (419)
T ss_pred chHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeeehh
Confidence 55554432221110 0 0144555555554311 111222344555555555554322 1122233344555555555
Q ss_pred CCcCcccCCcc---ccccCCCCEEeCCCC
Q 047332 528 ANKLKSSIPKS---IGNLLRLRYLDLSNN 553 (614)
Q Consensus 528 ~n~l~~~~~~~---l~~l~~L~~L~l~~n 553 (614)
.|.. ++|+. +...++|.+|++-++
T Consensus 347 RCY~--i~p~~~~~l~s~psl~yLdv~g~ 373 (419)
T KOG2120|consen 347 RCYD--IIPETLLELNSKPSLVYLDVFGC 373 (419)
T ss_pred hhcC--CChHHeeeeccCcceEEEEeccc
Confidence 5542 23322 334455555555444
No 48
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.23 E-value=1.2e-07 Score=86.16 Aligned_cols=89 Identities=21% Similarity=0.092 Sum_probs=42.4
Q ss_pred CCCCCCEEeccCCcCcccc----CccccCCCCCCEEecCCCcccccCCcc----C--CCCCCCCEeecCCCcccccCCcc
Q 047332 253 NLKSLLQLDLSENQLIGSI----PLSFGNLSRLTLMSLFNNLLSGSLPPI----L--GNLKSLSALGLHINQLSGVIPSS 322 (614)
Q Consensus 253 ~l~~L~~L~L~~n~~~~~~----~~~l~~l~~L~~L~L~~~~~~~~~~~~----l--~~l~~L~~L~L~~n~l~~~~~~~ 322 (614)
.+++|++||+.+|.++-.. ...+...+.|+.|.+.+|-++...... | ...|+|..|...+|...+.+...
T Consensus 212 y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDClls~~G~~~v~~~f~e~~~p~l~~L~~~Yne~~~~~i~~ 291 (388)
T COG5238 212 YSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCLLSNEGVKSVLRRFNEKFVPNLMPLPGDYNERRGGIILD 291 (388)
T ss_pred HhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccchhhccccHHHHHHHhhhhcCCCccccccchhhhcCceeee
Confidence 3455666666665554221 122333445566666665543221111 1 12356666666666554322211
Q ss_pred -----c--cCCCCCCEEEccCCcccc
Q 047332 323 -----I--GNLSSLRALYLYNNGLCG 341 (614)
Q Consensus 323 -----l--~~~~~L~~L~l~~n~~~~ 341 (614)
+ ..+|-|..|.+.+|.+..
T Consensus 292 ~~l~~~e~~~~p~L~~le~ngNr~~E 317 (388)
T COG5238 292 ISLNEFEQDAVPLLVDLERNGNRIKE 317 (388)
T ss_pred echhhhhhcccHHHHHHHHccCcchh
Confidence 1 245566666666676654
No 49
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.15 E-value=4e-08 Score=100.75 Aligned_cols=105 Identities=34% Similarity=0.281 Sum_probs=43.4
Q ss_pred CCCCCEEeCCCCcCccccchhccCCCCCCEeeccCCccccCccccccCCCCCCEEeCCCCcCcccCCccccccCCCCEEe
Q 047332 470 SPKLQVLDLSSNSIVGEIPVQLGKLFSLNKLILNLNQLSGGMPLELGSLTELQYLDLSANKLKSSIPKSIGNLLRLRYLD 549 (614)
Q Consensus 470 ~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~ 549 (614)
++.|+.|+|+.|++++.. .+..+..|++|||+.|.+....-....+|. |+.|.+++|.++.. ..+.++.+|+.||
T Consensus 186 l~ale~LnLshNk~~~v~--~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~-L~~L~lrnN~l~tL--~gie~LksL~~LD 260 (1096)
T KOG1859|consen 186 LPALESLNLSHNKFTKVD--NLRRLPKLKHLDLSYNCLRHVPQLSMVGCK-LQLLNLRNNALTTL--RGIENLKSLYGLD 260 (1096)
T ss_pred HHHhhhhccchhhhhhhH--HHHhcccccccccccchhccccccchhhhh-heeeeecccHHHhh--hhHHhhhhhhccc
Confidence 344444444444443221 344444444444444444421111222333 44455555444422 2344444455555
Q ss_pred CCCCcCCcCC-ChhhhcCCCCCeeeCCCCCC
Q 047332 550 LSNNQFGHKI-PIELEKLIHLSELDLSYNFL 579 (614)
Q Consensus 550 l~~n~~~~~~-p~~l~~l~~L~~L~L~~n~~ 579 (614)
++.|-+.+.- ..-+..+.+|..|.|.+|++
T Consensus 261 lsyNll~~hseL~pLwsLs~L~~L~LeGNPl 291 (1096)
T KOG1859|consen 261 LSYNLLSEHSELEPLWSLSSLIVLWLEGNPL 291 (1096)
T ss_pred hhHhhhhcchhhhHHHHHHHHHHHhhcCCcc
Confidence 5544443311 11233334444445554444
No 50
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.09 E-value=1.1e-06 Score=79.90 Aligned_cols=136 Identities=21% Similarity=0.174 Sum_probs=75.3
Q ss_pred CCCCCCEEeCCCCcCcccc----chhccCCCCCCEeeccCCccccC-----ccccccCCCCCCEEeCCCCcCccc----C
Q 047332 469 DSPKLQVLDLSSNSIVGEI----PVQLGKLFSLNKLILNLNQLSGG-----MPLELGSLTELQYLDLSANKLKSS----I 535 (614)
Q Consensus 469 ~~~~L~~L~l~~~~~~~~~----~~~~~~~~~L~~L~l~~n~~~~~-----~~~~~~~l~~L~~L~ls~n~l~~~----~ 535 (614)
.-|.|++.....|++..-. ...+..-..|+++.+-.|.|... ....+..+.+|+.||+.+|-++.. +
T Consensus 155 ~kp~Le~vicgrNRlengs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~L 234 (388)
T COG5238 155 DKPKLEVVICGRNRLENGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYL 234 (388)
T ss_pred cCCCceEEEeccchhccCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHH
Confidence 3466777777777664111 11222335677777777766522 112335667777777777776532 2
Q ss_pred CccccccCCCCEEeCCCCcCCcCCChhh----h--cCCCCCeeeCCCCCCCCCCCcc-----c--cCCCCCCeEECcCCC
Q 047332 536 PKSIGNLLRLRYLDLSNNQFGHKIPIEL----E--KLIHLSELDLSYNFLGEEIPFQ-----I--CNVKSLEKLNLCHNN 602 (614)
Q Consensus 536 ~~~l~~l~~L~~L~l~~n~~~~~~p~~l----~--~l~~L~~L~L~~n~~~~~~p~~-----l--~~l~sL~~L~l~~n~ 602 (614)
...+..++.|+.|.+..|-++......+ . ..++|+.|...+|.+.+.+-.. | ..++-|..|.+.+|.
T Consensus 235 a~al~~W~~lrEL~lnDClls~~G~~~v~~~f~e~~~p~l~~L~~~Yne~~~~~i~~~~l~~~e~~~~p~L~~le~ngNr 314 (388)
T COG5238 235 ADALCEWNLLRELRLNDCLLSNEGVKSVLRRFNEKFVPNLMPLPGDYNERRGGIILDISLNEFEQDAVPLLVDLERNGNR 314 (388)
T ss_pred HHHhcccchhhhccccchhhccccHHHHHHHhhhhcCCCccccccchhhhcCceeeeechhhhhhcccHHHHHHHHccCc
Confidence 2334456667777777777665443322 1 2467777777777654432211 1 124555566666665
Q ss_pred Cc
Q 047332 603 LL 604 (614)
Q Consensus 603 l~ 604 (614)
+.
T Consensus 315 ~~ 316 (388)
T COG5238 315 IK 316 (388)
T ss_pred ch
Confidence 54
No 51
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.08 E-value=8.6e-07 Score=81.70 Aligned_cols=230 Identities=20% Similarity=0.148 Sum_probs=145.6
Q ss_pred cccCCCCCCEEECcCCCCCCCCC-ccc-cCCCCCcEEEccCCcCCc--ccccccCCCCCCCEEECcCcccccccCccccC
Q 047332 370 SIGNLTGLLLLNMCENHLSGPIP-KSF-KNLTSVERVLLNQNNLSG--KVYEAFGDHPNLTFLNLSQNNFCGEISFNWRN 445 (614)
Q Consensus 370 ~~~~l~~L~~L~ls~n~l~~~~~-~~~-~~~~~L~~L~l~~n~~~~--~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~ 445 (614)
.+..+..++.+.+.++.+...-. ..| ..++.++++++.+|.++. .+...+..+|.|+.|+++.|++...+...-..
T Consensus 40 ~v~s~ra~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p 119 (418)
T KOG2982|consen 40 GVSSLRALELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLP 119 (418)
T ss_pred eeccccchhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCccc
Confidence 33344445555555555543211 112 346788999999999873 33344578999999999999987655332234
Q ss_pred CCCCcEEEcccCcccccC-CccCCCCCCCCEEeCCCCcCccc--cchhccC-CCCCCEeeccCCccccC--ccccccCCC
Q 047332 446 FPKLGTFIVSVNNISGSI-PPEIGDSPKLQVLDLSSNSIVGE--IPVQLGK-LFSLNKLILNLNQLSGG--MPLELGSLT 519 (614)
Q Consensus 446 ~~~L~~L~l~~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~--~~~~~~~-~~~L~~L~l~~n~~~~~--~~~~~~~l~ 519 (614)
..+|++|.+.+..+.-.- ...+..+|.+++|+++.|..... ....... -+.++++.+..|....- .-.--..++
T Consensus 120 ~~nl~~lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fp 199 (418)
T KOG2982|consen 120 LKNLRVLVLNGTGLSWTQSTSSLDDLPKVTELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFP 199 (418)
T ss_pred ccceEEEEEcCCCCChhhhhhhhhcchhhhhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcc
Confidence 678999999888775332 23455678889999998843311 0111111 12455666666543310 001113457
Q ss_pred CCCEEeCCCCcCccc-CCccccccCCCCEEeCCCCcCCcC-CChhhhcCCCCCeeeCCCCCCCCCCCc------cccCCC
Q 047332 520 ELQYLDLSANKLKSS-IPKSIGNLLRLRYLDLSNNQFGHK-IPIELEKLIHLSELDLSYNFLGEEIPF------QICNVK 591 (614)
Q Consensus 520 ~L~~L~ls~n~l~~~-~~~~l~~l~~L~~L~l~~n~~~~~-~p~~l~~l~~L~~L~L~~n~~~~~~p~------~l~~l~ 591 (614)
++..+-+..|.+... ..+.+..++.+--|+|+.+++..- .-.++.++++|..|.++++++...+.. .++.++
T Consensus 200 nv~sv~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l~~~err~llIaRL~ 279 (418)
T KOG2982|consen 200 NVNSVFVCEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSDPLRGGERRFLLIARLT 279 (418)
T ss_pred cchheeeecCcccchhhcccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCcccccccCCcceEEEEeecc
Confidence 888888999977643 335677788888999999998432 126788899999999999988665332 235577
Q ss_pred CCCeEECc
Q 047332 592 SLEKLNLC 599 (614)
Q Consensus 592 sL~~L~l~ 599 (614)
.++.|+=+
T Consensus 280 ~v~vLNGs 287 (418)
T KOG2982|consen 280 KVQVLNGS 287 (418)
T ss_pred ceEEecCc
Confidence 77777654
No 52
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.05 E-value=1.4e-06 Score=80.40 Aligned_cols=224 Identities=18% Similarity=0.136 Sum_probs=142.4
Q ss_pred CCcEEEcccccCCccCC-ccc-cCCCCCCEEECcCCCCCC--CCCccccCCCCCcEEEccCCcCCcccccccCCCCCCCE
Q 047332 352 SLSELELCKNHLSGVIP-HSI-GNLTGLLLLNMCENHLSG--PIPKSFKNLTSVERVLLNQNNLSGKVYEAFGDHPNLTF 427 (614)
Q Consensus 352 ~L~~L~l~~n~~~~~~~-~~~-~~l~~L~~L~ls~n~l~~--~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~ 427 (614)
.++.+-+.++.+..... ..| ...+.++.+|+.+|.++. .+...+.+++.|+.|+++.|.+...+...=....+|+.
T Consensus 46 a~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~ 125 (418)
T KOG2982|consen 46 ALELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRV 125 (418)
T ss_pred chhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEE
Confidence 34455555555543211 112 235678999999998874 45556788999999999999887433221134568899
Q ss_pred EECcCccccccc-CccccCCCCCcEEEcccCcccccC--CccCCC-CCCCCEEeCCCCcCcc--ccchhccCCCCCCEee
Q 047332 428 LNLSQNNFCGEI-SFNWRNFPKLGTFIVSVNNISGSI--PPEIGD-SPKLQVLDLSSNSIVG--EIPVQLGKLFSLNKLI 501 (614)
Q Consensus 428 L~l~~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~~--~~~~~~-~~~L~~L~l~~~~~~~--~~~~~~~~~~~L~~L~ 501 (614)
|.+.+..+.... ...+..+|.++.|.++.|..-... ...... -+.++++....|.... ..-.....++++..+.
T Consensus 126 lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~ 205 (418)
T KOG2982|consen 126 LVLNGTGLSWTQSTSSLDDLPKVTELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVF 205 (418)
T ss_pred EEEcCCCCChhhhhhhhhcchhhhhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchhee
Confidence 999888776543 334556888899988888433111 111111 2456666666665431 1112234567888889
Q ss_pred ccCCccccC-ccccccCCCCCCEEeCCCCcCccc-CCccccccCCCCEEeCCCCcCCcCCCh------hhhcCCCCCeee
Q 047332 502 LNLNQLSGG-MPLELGSLTELQYLDLSANKLKSS-IPKSIGNLLRLRYLDLSNNQFGHKIPI------ELEKLIHLSELD 573 (614)
Q Consensus 502 l~~n~~~~~-~~~~~~~l~~L~~L~ls~n~l~~~-~~~~l~~l~~L~~L~l~~n~~~~~~p~------~l~~l~~L~~L~ 573 (614)
+..|++... .-..+...+.+..|+++.+++.+- .-+.+..+++|..|.++++++.+..-. -++.+++++.|+
T Consensus 206 v~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l~~~err~llIaRL~~v~vLN 285 (418)
T KOG2982|consen 206 VCEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSDPLRGGERRFLLIARLTKVQVLN 285 (418)
T ss_pred eecCcccchhhcccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCcccccccCCcceEEEEeeccceEEec
Confidence 999987643 233455667777899999988642 225678899999999999998664322 235677777775
Q ss_pred CC
Q 047332 574 LS 575 (614)
Q Consensus 574 L~ 575 (614)
=+
T Consensus 286 Gs 287 (418)
T KOG2982|consen 286 GS 287 (418)
T ss_pred Cc
Confidence 44
No 53
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.91 E-value=9.9e-07 Score=71.79 Aligned_cols=116 Identities=26% Similarity=0.287 Sum_probs=76.9
Q ss_pred CCCCCCEEeCCCCcCccccchhccCCCCCCEeeccCCccccCccccccCCCCCCEEeCCCCcCcccCCccccccCCCCEE
Q 047332 469 DSPKLQVLDLSSNSIVGEIPVQLGKLFSLNKLILNLNQLSGGMPLELGSLTELQYLDLSANKLKSSIPKSIGNLLRLRYL 548 (614)
Q Consensus 469 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L 548 (614)
....|+..++++|.+.+..+.....++.++.+++++|.++ .+|..+..++.|+.|+++.|.+. ..|..+..+.++-.|
T Consensus 51 ~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~-~~p~vi~~L~~l~~L 128 (177)
T KOG4579|consen 51 KGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLN-AEPRVIAPLIKLDML 128 (177)
T ss_pred CCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhcccccCccc-cchHHHHHHHhHHHh
Confidence 3455667778888777444444445567788888888887 56666888888888888888887 667777777788888
Q ss_pred eCCCCcCCcCCChhhhcCCCCCeeeCCCCCCCCCCCccc
Q 047332 549 DLSNNQFGHKIPIELEKLIHLSELDLSYNFLGEEIPFQI 587 (614)
Q Consensus 549 ~l~~n~~~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~l 587 (614)
+..+|.+ ..+|..+---......++.++++.+.-+..+
T Consensus 129 ds~~na~-~eid~dl~~s~~~al~~lgnepl~~~~~~kl 166 (177)
T KOG4579|consen 129 DSPENAR-AEIDVDLFYSSLPALIKLGNEPLGDETKKKL 166 (177)
T ss_pred cCCCCcc-ccCcHHHhccccHHHHHhcCCcccccCcccc
Confidence 8887777 4455443322334445556666665555443
No 54
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.88 E-value=4.9e-05 Score=75.60 Aligned_cols=136 Identities=17% Similarity=0.214 Sum_probs=85.2
Q ss_pred ccCCCCCcEEEcccCcccccCCccCCCCCCCCEEeCCCCcCccccchhccCCCCCCEeeccCCccccCccccccCCCCCC
Q 047332 443 WRNFPKLGTFIVSVNNISGSIPPEIGDSPKLQVLDLSSNSIVGEIPVQLGKLFSLNKLILNLNQLSGGMPLELGSLTELQ 522 (614)
Q Consensus 443 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~ 522 (614)
+..+..++.|++++|.++ .+|. -.++|++|.+++|.-...+|..+ ..+|+.|++++|.....+| ++|+
T Consensus 48 ~~~~~~l~~L~Is~c~L~-sLP~---LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~sLP------~sLe 115 (426)
T PRK15386 48 IEEARASGRLYIKDCDIE-SLPV---LPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEISGLP------ESVR 115 (426)
T ss_pred HHHhcCCCEEEeCCCCCc-ccCC---CCCCCcEEEccCCCCcccCCchh--hhhhhheEccCcccccccc------cccc
Confidence 445789999999999776 4552 23579999999987655667655 3589999999994322344 4578
Q ss_pred EEeCCCCcCc--ccCCccccccCCCCEEeCCCCc-CC-cCCChhhhcCCCCCeeeCCCCCCCCCCCccccCCCCCCeEEC
Q 047332 523 YLDLSANKLK--SSIPKSIGNLLRLRYLDLSNNQ-FG-HKIPIELEKLIHLSELDLSYNFLGEEIPFQICNVKSLEKLNL 598 (614)
Q Consensus 523 ~L~ls~n~l~--~~~~~~l~~l~~L~~L~l~~n~-~~-~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~sL~~L~l 598 (614)
.|+++.+... +.+| ++|+.|.+.+++ .. ..+|..+. ++|++|++++|.... .|..+. .+|+.|++
T Consensus 116 ~L~L~~n~~~~L~~LP------ssLk~L~I~~~n~~~~~~lp~~LP--sSLk~L~Is~c~~i~-LP~~LP--~SLk~L~l 184 (426)
T PRK15386 116 SLEIKGSATDSIKNVP------NGLTSLSINSYNPENQARIDNLIS--PSLKTLSLTGCSNII-LPEKLP--ESLQSITL 184 (426)
T ss_pred eEEeCCCCCcccccCc------chHhheeccccccccccccccccC--CcccEEEecCCCccc-Cccccc--ccCcEEEe
Confidence 8888766543 1233 356666665433 11 11121111 478888888877543 333332 57777777
Q ss_pred cCC
Q 047332 599 CHN 601 (614)
Q Consensus 599 ~~n 601 (614)
+.|
T Consensus 185 s~n 187 (426)
T PRK15386 185 HIE 187 (426)
T ss_pred ccc
Confidence 765
No 55
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.81 E-value=3.3e-05 Score=67.58 Aligned_cols=104 Identities=28% Similarity=0.285 Sum_probs=53.1
Q ss_pred CCCEEeCCCCcCccccchhccCCCCCCEeeccCCccccCccccccCCCCCCEEeCCCCcCcccC-CccccccCCCCEEeC
Q 047332 472 KLQVLDLSSNSIVGEIPVQLGKLFSLNKLILNLNQLSGGMPLELGSLTELQYLDLSANKLKSSI-PKSIGNLLRLRYLDL 550 (614)
Q Consensus 472 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~-~~~l~~l~~L~~L~l 550 (614)
+...+|+++|.+.. ...|..++.|.+|.+.+|+|+...|.--..+++|..|.+.+|.+.... -+.+..|+.|+.|.+
T Consensus 43 ~~d~iDLtdNdl~~--l~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltl 120 (233)
T KOG1644|consen 43 QFDAIDLTDNDLRK--LDNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTL 120 (233)
T ss_pred ccceecccccchhh--cccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceeee
Confidence 34456666665531 123445556666666666666444444444555666666666543211 123445566666666
Q ss_pred CCCcCCcCC---ChhhhcCCCCCeeeCCCC
Q 047332 551 SNNQFGHKI---PIELEKLIHLSELDLSYN 577 (614)
Q Consensus 551 ~~n~~~~~~---p~~l~~l~~L~~L~L~~n 577 (614)
-+|++...- -..+..+++|++||+.+-
T Consensus 121 l~Npv~~k~~YR~yvl~klp~l~~LDF~kV 150 (233)
T KOG1644|consen 121 LGNPVEHKKNYRLYVLYKLPSLRTLDFQKV 150 (233)
T ss_pred cCCchhcccCceeEEEEecCcceEeehhhh
Confidence 666554321 123445556666665544
No 56
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.76 E-value=7e-05 Score=74.53 Aligned_cols=137 Identities=15% Similarity=0.143 Sum_probs=90.1
Q ss_pred cCCCCCCCEEECcCcccccccCccccCCCCCcEEEcccCcccccCCccCCCCCCCCEEeCCCCcCccccchhccCCCCCC
Q 047332 419 FGDHPNLTFLNLSQNNFCGEISFNWRNFPKLGTFIVSVNNISGSIPPEIGDSPKLQVLDLSSNSIVGEIPVQLGKLFSLN 498 (614)
Q Consensus 419 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~ 498 (614)
+..+..++.|++++|.+... | .-.++|+.|.+.+|.-...+|..+ .++|+.|++++|.....+| .+|+
T Consensus 48 ~~~~~~l~~L~Is~c~L~sL-P---~LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~sLP------~sLe 115 (426)
T PRK15386 48 IEEARASGRLYIKDCDIESL-P---VLPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEISGLP------ESVR 115 (426)
T ss_pred HHHhcCCCEEEeCCCCCccc-C---CCCCCCcEEEccCCCCcccCCchh--hhhhhheEccCcccccccc------cccc
Confidence 45578999999999977633 4 224579999999976655667655 3689999999995433455 3578
Q ss_pred EeeccCCcccc--CccccccCCCCCCEEeCCCCcCc-c-cCCccccccCCCCEEeCCCCcCCcCCChhhhcCCCCCeeeC
Q 047332 499 KLILNLNQLSG--GMPLELGSLTELQYLDLSANKLK-S-SIPKSIGNLLRLRYLDLSNNQFGHKIPIELEKLIHLSELDL 574 (614)
Q Consensus 499 ~L~l~~n~~~~--~~~~~~~~l~~L~~L~ls~n~l~-~-~~~~~l~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~L 574 (614)
.|++..+.... .+| ++|+.|.+.++... . .+|.. -.++|+.|++++|... ..|..+. .+|+.|++
T Consensus 116 ~L~L~~n~~~~L~~LP------ssLk~L~I~~~n~~~~~~lp~~--LPsSLk~L~Is~c~~i-~LP~~LP--~SLk~L~l 184 (426)
T PRK15386 116 SLEIKGSATDSIKNVP------NGLTSLSINSYNPENQARIDNL--ISPSLKTLSLTGCSNI-ILPEKLP--ESLQSITL 184 (426)
T ss_pred eEEeCCCCCcccccCc------chHhheeccccccccccccccc--cCCcccEEEecCCCcc-cCccccc--ccCcEEEe
Confidence 88887665431 223 36777877543311 0 11211 2268999999988864 3444444 48889998
Q ss_pred CCCC
Q 047332 575 SYNF 578 (614)
Q Consensus 575 ~~n~ 578 (614)
+.|.
T Consensus 185 s~n~ 188 (426)
T PRK15386 185 HIEQ 188 (426)
T ss_pred cccc
Confidence 8763
No 57
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.68 E-value=2.6e-05 Score=51.30 Aligned_cols=17 Identities=41% Similarity=0.501 Sum_probs=6.9
Q ss_pred hhcCCCCCeeeCCCCCC
Q 047332 563 LEKLIHLSELDLSYNFL 579 (614)
Q Consensus 563 l~~l~~L~~L~L~~n~~ 579 (614)
++++++|+.|++++|++
T Consensus 20 l~~l~~L~~L~l~~N~i 36 (44)
T PF12799_consen 20 LSNLPNLETLNLSNNPI 36 (44)
T ss_dssp GTTCTTSSEEEETSSCC
T ss_pred HhCCCCCCEEEecCCCC
Confidence 33444444444444433
No 58
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.68 E-value=4.8e-05 Score=50.02 Aligned_cols=34 Identities=32% Similarity=0.569 Sum_probs=13.4
Q ss_pred CCEEEcccccCCCCCCccccCCCCCcEEEeccccC
Q 047332 137 LRILYFDVNQLHGSIPPEIGQLSLINVLALCHNNL 171 (614)
Q Consensus 137 L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~l 171 (614)
|++|++++|+++ .+|..++++++|++|++++|.+
T Consensus 3 L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i 36 (44)
T PF12799_consen 3 LEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPI 36 (44)
T ss_dssp -SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCC
T ss_pred ceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCC
Confidence 444444444443 3333344444444444444443
No 59
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=97.60 E-value=1.3e-06 Score=84.37 Aligned_cols=207 Identities=19% Similarity=0.047 Sum_probs=98.3
Q ss_pred CCCCCCEEECcCCC-CCC-CCCccccCCCCCcEEEccCCcCCcc--cccccCCCCCCCEEECcCccc-ccccCc-cccCC
Q 047332 373 NLTGLLLLNMCENH-LSG-PIPKSFKNLTSVERVLLNQNNLSGK--VYEAFGDHPNLTFLNLSQNNF-CGEISF-NWRNF 446 (614)
Q Consensus 373 ~l~~L~~L~ls~n~-l~~-~~~~~~~~~~~L~~L~l~~n~~~~~--~~~~~~~~~~L~~L~l~~~~~-~~~~~~-~~~~~ 446 (614)
.+++|++++++++. +++ .+-..+.++..++.+...+|.-.+. +...-..++.+..+++..|.. +..... .-..+
T Consensus 214 gC~kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c 293 (483)
T KOG4341|consen 214 GCRKLKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGC 293 (483)
T ss_pred hhhhHHHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHhhhh
Confidence 34555556655553 222 1122334455555555544321100 001112344455555545432 221111 11235
Q ss_pred CCCcEEEcccCcccccC--CccCCCCCCCCEEeCCCCcCc-cccc-hhccCCCCCCEeeccCCccc--cCccccccCCCC
Q 047332 447 PKLGTFIVSVNNISGSI--PPEIGDSPKLQVLDLSSNSIV-GEIP-VQLGKLFSLNKLILNLNQLS--GGMPLELGSLTE 520 (614)
Q Consensus 447 ~~L~~L~l~~~~~~~~~--~~~~~~~~~L~~L~l~~~~~~-~~~~-~~~~~~~~L~~L~l~~n~~~--~~~~~~~~~l~~ 520 (614)
..|+.+..+++...+.. ...-.++++|+.+.++.|+-. ..-. ..-.+++.|+.+++.++... +.+...-.+|+.
T Consensus 294 ~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~ 373 (483)
T KOG4341|consen 294 HALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPR 373 (483)
T ss_pred hHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCch
Confidence 56666666665432221 112235667777777776521 1111 11235566777777766433 112222246677
Q ss_pred CCEEeCCCCcCcccC-----CccccccCCCCEEeCCCCcCC-cCCChhhhcCCCCCeeeCCCCCC
Q 047332 521 LQYLDLSANKLKSSI-----PKSIGNLLRLRYLDLSNNQFG-HKIPIELEKLIHLSELDLSYNFL 579 (614)
Q Consensus 521 L~~L~ls~n~l~~~~-----~~~l~~l~~L~~L~l~~n~~~-~~~p~~l~~l~~L~~L~L~~n~~ 579 (614)
|+.+.+++|...... ...-..+..|..+.+++++.. +...+.+..++.||.+++.+|.-
T Consensus 374 lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~ 438 (483)
T KOG4341|consen 374 LRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQD 438 (483)
T ss_pred hccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechhh
Confidence 777777776543111 111234556777777777643 33344556667777777777743
No 60
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=97.56 E-value=1.8e-06 Score=83.52 Aligned_cols=38 Identities=21% Similarity=0.137 Sum_probs=19.2
Q ss_pred CCCCCCEeeccCCcccc-CccccccCCCCCCEEeCCCCc
Q 047332 493 KLFSLNKLILNLNQLSG-GMPLELGSLTELQYLDLSANK 530 (614)
Q Consensus 493 ~~~~L~~L~l~~n~~~~-~~~~~~~~l~~L~~L~ls~n~ 530 (614)
.+..|+.+.+++|+... ...+.+..|++|+.+++-+++
T Consensus 399 ~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q 437 (483)
T KOG4341|consen 399 SLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQ 437 (483)
T ss_pred cccccceeeecCCCCchHHHHHHHhhCcccceeeeechh
Confidence 34455555555555432 123344555566666555553
No 61
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.56 E-value=0.00012 Score=64.29 Aligned_cols=106 Identities=25% Similarity=0.239 Sum_probs=56.4
Q ss_pred CCCCcEEEcccCcccccCCccCCCCCCCCEEeCCCCcCccccchhccCCCCCCEeeccCCccccC-ccccccCCCCCCEE
Q 047332 446 FPKLGTFIVSVNNISGSIPPEIGDSPKLQVLDLSSNSIVGEIPVQLGKLFSLNKLILNLNQLSGG-MPLELGSLTELQYL 524 (614)
Q Consensus 446 ~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~-~~~~~~~l~~L~~L 524 (614)
......+++.+|.+... ..|..++.|.+|.+.+|+++...|..-..++.|+.|.+.+|++... ...-+..||.|++|
T Consensus 41 ~d~~d~iDLtdNdl~~l--~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~L 118 (233)
T KOG1644|consen 41 LDQFDAIDLTDNDLRKL--DNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYL 118 (233)
T ss_pred ccccceecccccchhhc--ccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCcccee
Confidence 33455566666655321 2344556666666666666644444444455566666666655421 11224455666666
Q ss_pred eCCCCcCcccCC---ccccccCCCCEEeCCCC
Q 047332 525 DLSANKLKSSIP---KSIGNLLRLRYLDLSNN 553 (614)
Q Consensus 525 ~ls~n~l~~~~~---~~l~~l~~L~~L~l~~n 553 (614)
.+-+|++...-- ..+..+++|+.||..+-
T Consensus 119 tll~Npv~~k~~YR~yvl~klp~l~~LDF~kV 150 (233)
T KOG1644|consen 119 TLLGNPVEHKKNYRLYVLYKLPSLRTLDFQKV 150 (233)
T ss_pred eecCCchhcccCceeEEEEecCcceEeehhhh
Confidence 666666543211 23445666666666543
No 62
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=97.53 E-value=0.00018 Score=60.94 Aligned_cols=107 Identities=16% Similarity=0.166 Sum_probs=43.9
Q ss_pred cccccCCCCCcEEECCCCCCCccCcccccCCCCCCEEeCCCCCCCCCCCcCCCCCCCCCEEEcccccCCCCCCccccCCC
Q 047332 80 EFAFSSFPHLVQLNLSFNIFFGIIPPQIGNLSKLQYLDLGSNQLSGVIPPEIGHLNQLRILYFDVNQLHGSIPPEIGQLS 159 (614)
Q Consensus 80 ~~~~~~l~~L~~L~Ls~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~ 159 (614)
..+|..+++|+.+.+.. .+...-..+|..+++|+.+++..+ +...-...|..++.|+++.+.. .+...-...|.+++
T Consensus 5 ~~~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~ 81 (129)
T PF13306_consen 5 NNAFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCT 81 (129)
T ss_dssp TTTTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-T
T ss_pred HHHHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-cccccccccccccc
Confidence 33566666666666653 344444455666666666666553 4433334555665666666654 22212223444555
Q ss_pred CCcEEEeccccCCCCCCcccCCCCCCcEEEee
Q 047332 160 LINVLALCHNNLYGSIPSSLGNLSNLANFYFN 191 (614)
Q Consensus 160 ~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~ 191 (614)
+|+.+++..+ +.......+.++ +|+.+.+.
T Consensus 82 ~l~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~ 111 (129)
T PF13306_consen 82 NLKNIDIPSN-ITEIGSSSFSNC-NLKEINIP 111 (129)
T ss_dssp TECEEEETTT--BEEHTTTTTT--T--EEE-T
T ss_pred cccccccCcc-ccEEchhhhcCC-CceEEEEC
Confidence 5555555443 222222333443 55555444
No 63
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.52 E-value=2.9e-05 Score=83.98 Aligned_cols=197 Identities=19% Similarity=0.182 Sum_probs=119.2
Q ss_pred CEEEEEcCCCCCCcccCcccccCCCCCcEEECCCCCCCcc-------------Cccccc--CCCCCCEEeCCCCCCC-CC
Q 047332 63 RVISINLSSMALNGTLQEFAFSSFPHLVQLNLSFNIFFGI-------------IPPQIG--NLSKLQYLDLGSNQLS-GV 126 (614)
Q Consensus 63 ~v~~l~l~~~~l~~~~~~~~~~~l~~L~~L~Ls~~~~~~~-------------~~~~l~--~l~~L~~L~Ls~n~l~-~~ 126 (614)
.++++++.+..+...... .+.... |+++.|.+-..... +...+. .-.+|++|++++...- ..
T Consensus 61 ~ltki~l~~~~~~~~~~~-~l~~~~-L~sl~LGnl~~~k~~~~~~~~idi~~lL~~~Ln~~sr~nL~~LdI~G~~~~s~~ 138 (699)
T KOG3665|consen 61 NLTKIDLKNVTLQHQTLE-MLRKQD-LESLKLGNLDKIKQDYLDDATIDIISLLKDLLNEESRQNLQHLDISGSELFSNG 138 (699)
T ss_pred eeEEeeccceecchhHHH-HHhhcc-ccccCCcchHhhhhhhhhhhhccHHHHHHHHHhHHHHHhhhhcCccccchhhcc
Confidence 578888877766554333 344444 77777754322110 111111 1257888998885322 11
Q ss_pred CCcCC-CCCCCCCEEEcccccCCC-CCCccccCCCCCcEEEeccccCCCCCCcccCCCCCCcEEEeecCCCcc-cCCccc
Q 047332 127 IPPEI-GHLNQLRILYFDVNQLHG-SIPPEIGQLSLINVLALCHNNLYGSIPSSLGNLSNLANFYFNNNSLFD-SIPLVL 203 (614)
Q Consensus 127 ~~~~l-~~l~~L~~L~l~~n~~~~-~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~-~~~~~l 203 (614)
=|..+ ..+|.|+.|.+++-.+.. .+.....++++|..||+++++++.. ..++.+++|+.|.+.+-.+.. ..-..+
T Consensus 139 W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknLq~L~mrnLe~e~~~~l~~L 216 (699)
T KOG3665|consen 139 WPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISRLKNLQVLSMRNLEFESYQDLIDL 216 (699)
T ss_pred HHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHhccccHHHHhccCCCCCchhhHHHH
Confidence 12223 348899999988876542 2234456788999999999888754 567888888888888766543 222356
Q ss_pred cCCCCCCeeeccCccCCccC------CccccCCCCCCeEEcccCccccccchh-ccCCCCCCEEecc
Q 047332 204 GNLNSLSTMDLSQNQFSGSI------PLSLGNLSNLGILYLYSNSFSGSIPSI-IGNLKSLLQLDLS 263 (614)
Q Consensus 204 ~~l~~L~~L~l~~~~~~~~~------~~~l~~l~~L~~L~L~~~~~~~~~~~~-l~~l~~L~~L~L~ 263 (614)
.++++|+.||+|........ .+.-..+++|+.|+.+++.+...+-+. +...++|+.+.+-
T Consensus 217 F~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~le~ll~sH~~L~~i~~~ 283 (699)
T KOG3665|consen 217 FNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEILEELLNSHPNLQQIAAL 283 (699)
T ss_pred hcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHHHHHHHHhCccHhhhhhh
Confidence 77889999999876543211 122234788999999988776543332 2334556555443
No 64
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=97.49 E-value=0.00053 Score=58.07 Aligned_cols=106 Identities=16% Similarity=0.222 Sum_probs=36.8
Q ss_pred cccCCCCCcEEEccCCcCCcccccccCCCCCCCEEECcCcccccccCccccCCCCCcEEEcccCcccccCCccCCCCCCC
Q 047332 394 SFKNLTSVERVLLNQNNLSGKVYEAFGDHPNLTFLNLSQNNFCGEISFNWRNFPKLGTFIVSVNNISGSIPPEIGDSPKL 473 (614)
Q Consensus 394 ~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L 473 (614)
.|.++++|+.+.+.. .+.......|..++.++.+.+.++ +.......|.++++++.+.+.+ .+...-...+..+++|
T Consensus 7 ~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l 83 (129)
T PF13306_consen 7 AFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNL 83 (129)
T ss_dssp TTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTE
T ss_pred HHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-cccccccccccccccc
Confidence 344555555555543 233344444555555555555442 3323333344444455554433 2211122233444555
Q ss_pred CEEeCCCCcCccccchhccCCCCCCEeeccC
Q 047332 474 QVLDLSSNSIVGEIPVQLGKLFSLNKLILNL 504 (614)
Q Consensus 474 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~ 504 (614)
+.+++..+ +.......+.++ .++.+.+.+
T Consensus 84 ~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~ 112 (129)
T PF13306_consen 84 KNIDIPSN-ITEIGSSSFSNC-NLKEINIPS 112 (129)
T ss_dssp CEEEETTT--BEEHTTTTTT--T--EEE-TT
T ss_pred cccccCcc-ccEEchhhhcCC-CceEEEECC
Confidence 55555432 221222333343 444444443
No 65
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.36 E-value=0.00011 Score=79.69 Aligned_cols=156 Identities=21% Similarity=0.170 Sum_probs=99.3
Q ss_pred CCCCcEEEcccCcccc-cCCccCC-CCCCCCEEeCCCCcCcc-ccchhccCCCCCCEeeccCCccccCccccccCCCCCC
Q 047332 446 FPKLGTFIVSVNNISG-SIPPEIG-DSPKLQVLDLSSNSIVG-EIPVQLGKLFSLNKLILNLNQLSGGMPLELGSLTELQ 522 (614)
Q Consensus 446 ~~~L~~L~l~~~~~~~-~~~~~~~-~~~~L~~L~l~~~~~~~-~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~ 522 (614)
-.+|+.|++++..... ..+..++ .+|+|+.|.+++-.+.. .......++++|..||+|++.++.. ..++++++|+
T Consensus 121 r~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknLq 198 (699)
T KOG3665|consen 121 RQNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISRLKNLQ 198 (699)
T ss_pred HHhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHhccccHH
Confidence 4578888888754431 1222233 47888888888866642 2344556788888888888888733 5677888888
Q ss_pred EEeCCCCcCcc-cCCccccccCCCCEEeCCCCcCCcCC--C----hhhhcCCCCCeeeCCCCCCCCCCCccc-cCCCCCC
Q 047332 523 YLDLSANKLKS-SIPKSIGNLLRLRYLDLSNNQFGHKI--P----IELEKLIHLSELDLSYNFLGEEIPFQI-CNVKSLE 594 (614)
Q Consensus 523 ~L~ls~n~l~~-~~~~~l~~l~~L~~L~l~~n~~~~~~--p----~~l~~l~~L~~L~L~~n~~~~~~p~~l-~~l~sL~ 594 (614)
.|.+.+=.+.. ..-..+-++++|+.||+|.......- . +.-..+|.|+.||.|+..+.+.+-+.+ ..-++|+
T Consensus 199 ~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~le~ll~sH~~L~ 278 (699)
T KOG3665|consen 199 VLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEILEELLNSHPNLQ 278 (699)
T ss_pred HHhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHHHHHHHHhCccHh
Confidence 88777766553 12234667888888888876653321 1 112347888888888887766544333 3456666
Q ss_pred eEECcCCCC
Q 047332 595 KLNLCHNNL 603 (614)
Q Consensus 595 ~L~l~~n~l 603 (614)
.+.+-+|..
T Consensus 279 ~i~~~~~~~ 287 (699)
T KOG3665|consen 279 QIAALDCLA 287 (699)
T ss_pred hhhhhhhhc
Confidence 666554443
No 66
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.19 E-value=0.0002 Score=65.57 Aligned_cols=66 Identities=26% Similarity=0.302 Sum_probs=27.1
Q ss_pred ccCCCCCCEEeCCCC--cCcccCCccccccCCCCEEeCCCCcCCcC-CChhhhcCCCCCeeeCCCCCCC
Q 047332 515 LGSLTELQYLDLSAN--KLKSSIPKSIGNLLRLRYLDLSNNQFGHK-IPIELEKLIHLSELDLSYNFLG 580 (614)
Q Consensus 515 ~~~l~~L~~L~ls~n--~l~~~~~~~l~~l~~L~~L~l~~n~~~~~-~p~~l~~l~~L~~L~L~~n~~~ 580 (614)
|..+++|+.|++|.| .+.+.++--...+++|++|++++|++... --..+..+.+|.+|++.+|..+
T Consensus 61 ~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~Ldl~n~~~~ 129 (260)
T KOG2739|consen 61 FPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLKSLDLFNCSVT 129 (260)
T ss_pred CCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcchhhhhcccCCcc
Confidence 334444455555554 33322332233344555555555544320 0012233344445555555443
No 67
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.09 E-value=0.00024 Score=65.15 Aligned_cols=62 Identities=19% Similarity=0.281 Sum_probs=33.9
Q ss_pred CCCCCCEEeCCCCCCCCCCCcCCCCCCCCCEEEcccc--cCCCCCCccccCCCCCcEEEeccccCC
Q 047332 109 NLSKLQYLDLGSNQLSGVIPPEIGHLNQLRILYFDVN--QLHGSIPPEIGQLSLINVLALCHNNLY 172 (614)
Q Consensus 109 ~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~l~~n--~~~~~~~~~~~~l~~L~~L~l~~~~l~ 172 (614)
.+..|+.|.+.+..++.. ..|..+++|++|.++.| ++.+.++.....+++|+++++++|++.
T Consensus 41 ~~~~le~ls~~n~gltt~--~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~ 104 (260)
T KOG2739|consen 41 EFVELELLSVINVGLTTL--TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIK 104 (260)
T ss_pred cccchhhhhhhccceeec--ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccc
Confidence 344455555555544422 23455666666666666 444444444455566666666666654
No 68
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=97.00 E-value=6.9e-05 Score=79.72 Aligned_cols=186 Identities=22% Similarity=0.147 Sum_probs=79.7
Q ss_pred CCCCCEEECcCCC-CCCCCCcccc-CCCCCcEEEccCCc-CCcccccc-cCCCCCCCEEECcCcccccc--cCccccCCC
Q 047332 374 LTGLLLLNMCENH-LSGPIPKSFK-NLTSVERVLLNQNN-LSGKVYEA-FGDHPNLTFLNLSQNNFCGE--ISFNWRNFP 447 (614)
Q Consensus 374 l~~L~~L~ls~n~-l~~~~~~~~~-~~~~L~~L~l~~n~-~~~~~~~~-~~~~~~L~~L~l~~~~~~~~--~~~~~~~~~ 447 (614)
+++|+.++++.+. ++...-..+. .|++|+.|.+.+|. ++...... ...++.|++|+++.|..... +.....+++
T Consensus 242 ~~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~ 321 (482)
T KOG1947|consen 242 CRKLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCP 321 (482)
T ss_pred cCCcCccchhhhhccCchhHHHHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhCc
Confidence 3455555555544 3322222222 25666666655554 34333222 24466666666666554311 111233355
Q ss_pred CCcEEEcccCcccccCCccCCCCCCCCEEeCCCCcCc---cccchhccCCCCCCEeeccCCccccCc-cccccCCCCCCE
Q 047332 448 KLGTFIVSVNNISGSIPPEIGDSPKLQVLDLSSNSIV---GEIPVQLGKLFSLNKLILNLNQLSGGM-PLELGSLTELQY 523 (614)
Q Consensus 448 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~---~~~~~~~~~~~~L~~L~l~~n~~~~~~-~~~~~~l~~L~~ 523 (614)
+++.+.+....- ++.++.+.+..+... .........++.++.+.+..+...... ...+.+|+.|.
T Consensus 322 ~l~~l~~~~~~~----------c~~l~~~~l~~~~~~~~d~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~l~gc~~l~- 390 (482)
T KOG1947|consen 322 NLRELKLLSLNG----------CPSLTDLSLSGLLTLTSDDLAELILRSCPKLTDLSLSYCGISDLGLELSLRGCPNLT- 390 (482)
T ss_pred chhhhhhhhcCC----------CccHHHHHHHHhhccCchhHhHHHHhcCCCcchhhhhhhhccCcchHHHhcCCcccc-
Confidence 555443322211 333444444333221 122233455666666666666633221 23344555551
Q ss_pred EeCCCCcCcccCCccccccCCCCEEeCCCCcCC-cCCChhhhc-CCCCCeeeCCCCCC
Q 047332 524 LDLSANKLKSSIPKSIGNLLRLRYLDLSNNQFG-HKIPIELEK-LIHLSELDLSYNFL 579 (614)
Q Consensus 524 L~ls~n~l~~~~~~~l~~l~~L~~L~l~~n~~~-~~~p~~l~~-l~~L~~L~L~~n~~ 579 (614)
..+... .....+++.|+++.+... ...-..... +..++.+++.++..
T Consensus 391 ~~l~~~---------~~~~~~l~~L~l~~~~~~t~~~l~~~~~~~~~~~~l~~~~~~~ 439 (482)
T KOG1947|consen 391 ESLELR---------LCRSDSLRVLNLSDCRLVTDKGLRCLADSCSNLKDLDLSGCRV 439 (482)
T ss_pred hHHHHH---------hccCCccceEecccCccccccchHHHhhhhhccccCCccCccc
Confidence 111111 111112666666666532 221122222 44566666666654
No 69
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=96.87 E-value=6.2e-05 Score=80.06 Aligned_cols=191 Identities=20% Similarity=0.115 Sum_probs=98.5
Q ss_pred ccCCCCCcEEEccCCc-CCcccccccCC-CCCCCEEECcCcc-ccccc-CccccCCCCCcEEEcccCccccc--CCccCC
Q 047332 395 FKNLTSVERVLLNQNN-LSGKVYEAFGD-HPNLTFLNLSQNN-FCGEI-SFNWRNFPKLGTFIVSVNNISGS--IPPEIG 468 (614)
Q Consensus 395 ~~~~~~L~~L~l~~n~-~~~~~~~~~~~-~~~L~~L~l~~~~-~~~~~-~~~~~~~~~L~~L~l~~~~~~~~--~~~~~~ 468 (614)
...+.+|+.++++.+. ++......+.. +++|+.|.+.+|. ++... ......++.|+.|+++.|..... +.....
T Consensus 239 ~~~~~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~ 318 (482)
T KOG1947|consen 239 LSICRKLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLK 318 (482)
T ss_pred hhhcCCcCccchhhhhccCchhHHHHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHH
Confidence 3456777888888776 55444444433 7778887777666 44332 22234466677777776654311 111223
Q ss_pred CCCCCCEEeCCCCcCccccchhccCCCCCCEeeccCCccc---cCccccccCCCCCCEEeCCCCcCcccC-CccccccCC
Q 047332 469 DSPKLQVLDLSSNSIVGEIPVQLGKLFSLNKLILNLNQLS---GGMPLELGSLTELQYLDLSANKLKSSI-PKSIGNLLR 544 (614)
Q Consensus 469 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~---~~~~~~~~~l~~L~~L~ls~n~l~~~~-~~~l~~l~~ 544 (614)
.+++++.+.+..... +..++.+.+..+.-. .........++.++.+.+..+...... ...+..++.
T Consensus 319 ~c~~l~~l~~~~~~~----------c~~l~~~~l~~~~~~~~d~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~l~gc~~ 388 (482)
T KOG1947|consen 319 NCPNLRELKLLSLNG----------CPSLTDLSLSGLLTLTSDDLAELILRSCPKLTDLSLSYCGISDLGLELSLRGCPN 388 (482)
T ss_pred hCcchhhhhhhhcCC----------CccHHHHHHHHhhccCchhHhHHHHhcCCCcchhhhhhhhccCcchHHHhcCCcc
Confidence 355555544333221 334444444433221 122234567778888888777743221 123334444
Q ss_pred CCEEeCCCCcCCcCCChhhhcCCCCCeeeCCCCCCCCCCC-ccccC-CCCCCeEECcCCCCcc
Q 047332 545 LRYLDLSNNQFGHKIPIELEKLIHLSELDLSYNFLGEEIP-FQICN-VKSLEKLNLCHNNLLG 605 (614)
Q Consensus 545 L~~L~l~~n~~~~~~p~~l~~l~~L~~L~L~~n~~~~~~p-~~l~~-l~sL~~L~l~~n~l~~ 605 (614)
|+ .. ..........++.|+++.|......- ..... +..++.+++.+|+...
T Consensus 389 l~-~~---------l~~~~~~~~~l~~L~l~~~~~~t~~~l~~~~~~~~~~~~l~~~~~~~~~ 441 (482)
T KOG1947|consen 389 LT-ES---------LELRLCRSDSLRVLNLSDCRLVTDKGLRCLADSCSNLKDLDLSGCRVIT 441 (482)
T ss_pred cc-hH---------HHHHhccCCccceEecccCccccccchHHHhhhhhccccCCccCccccc
Confidence 41 11 11111222238999999997644311 11122 6678888888887543
No 70
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.69 E-value=9.4e-05 Score=67.98 Aligned_cols=100 Identities=26% Similarity=0.126 Sum_probs=57.6
Q ss_pred CCCCCEeeccCCccccCccccccCCCCCCEEeCCCCcCcccCCccccccCCCCEEeCCCCcCCcCC-ChhhhcCCCCCee
Q 047332 494 LFSLNKLILNLNQLSGGMPLELGSLTELQYLDLSANKLKSSIPKSIGNLLRLRYLDLSNNQFGHKI-PIELEKLIHLSEL 572 (614)
Q Consensus 494 ~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~-p~~l~~l~~L~~L 572 (614)
+.+.+.|++-+|.+.. ......++.|+.|.||-|.|+.. ..+..|+.|++|+|..|.|...- ...+.++++|+.|
T Consensus 18 l~~vkKLNcwg~~L~D--Isic~kMp~lEVLsLSvNkIssL--~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~L 93 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDD--ISICEKMPLLEVLSLSVNKISSL--APLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTL 93 (388)
T ss_pred HHHhhhhcccCCCccH--HHHHHhcccceeEEeeccccccc--hhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhH
Confidence 3455666666666652 12345666777777777776644 33566677777777777664321 1345566666666
Q ss_pred eCCCCCCCCCCCc-----cccCCCCCCeEE
Q 047332 573 DLSYNFLGEEIPF-----QICNVKSLEKLN 597 (614)
Q Consensus 573 ~L~~n~~~~~~p~-----~l~~l~sL~~L~ 597 (614)
-|..|+-.+..+. .+.-+++|++||
T Consensus 94 WL~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 94 WLDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred hhccCCcccccchhHHHHHHHHcccchhcc
Confidence 6666666555432 233455555554
No 71
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.38 E-value=0.00016 Score=66.57 Aligned_cols=99 Identities=26% Similarity=0.187 Sum_probs=54.8
Q ss_pred CCCCEEeCCCCcCccccchhccCCCCCCEeeccCCccccCccccccCCCCCCEEeCCCCcCcccCC-ccccccCCCCEEe
Q 047332 471 PKLQVLDLSSNSIVGEIPVQLGKLFSLNKLILNLNQLSGGMPLELGSLTELQYLDLSANKLKSSIP-KSIGNLLRLRYLD 549 (614)
Q Consensus 471 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~-~~l~~l~~L~~L~ 549 (614)
.+.++|+.-+|.+.+. ....+|+.|+.|.|+=|.|+..- .+..|+.|++|+|..|.|.+... .-+.++++|+.|.
T Consensus 19 ~~vkKLNcwg~~L~DI--sic~kMp~lEVLsLSvNkIssL~--pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LW 94 (388)
T KOG2123|consen 19 ENVKKLNCWGCGLDDI--SICEKMPLLEVLSLSVNKISSLA--PLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLW 94 (388)
T ss_pred HHhhhhcccCCCccHH--HHHHhcccceeEEeeccccccch--hHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHh
Confidence 3455566666666432 23345666666777666666332 35566666777776666653211 2244566666666
Q ss_pred CCCCcCCcCCCh-----hhhcCCCCCeee
Q 047332 550 LSNNQFGHKIPI-----ELEKLIHLSELD 573 (614)
Q Consensus 550 l~~n~~~~~~p~-----~l~~l~~L~~L~ 573 (614)
|..|+=.+..+. .+.-+++|+.||
T Consensus 95 L~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 95 LDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred hccCCcccccchhHHHHHHHHcccchhcc
Confidence 666665554332 234455555554
No 72
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=94.76 E-value=0.00021 Score=74.02 Aligned_cols=36 Identities=31% Similarity=0.523 Sum_probs=19.1
Q ss_pred CCEEECcCCCCCCC----CCccccCCCCCcEEEccCCcCC
Q 047332 377 LLLLNMCENHLSGP----IPKSFKNLTSVERVLLNQNNLS 412 (614)
Q Consensus 377 L~~L~ls~n~l~~~----~~~~~~~~~~L~~L~l~~n~~~ 412 (614)
+..+.+.+|.+... +...+...+.|+.|++++|.+.
T Consensus 89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~ 128 (478)
T KOG4308|consen 89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLG 128 (478)
T ss_pred HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCc
Confidence 55566666665432 1223444555666666666555
No 73
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=94.35 E-value=0.014 Score=31.66 Aligned_cols=12 Identities=33% Similarity=0.343 Sum_probs=4.8
Q ss_pred CCEEEcccccCC
Q 047332 137 LRILYFDVNQLH 148 (614)
Q Consensus 137 L~~L~l~~n~~~ 148 (614)
|++||+++|+++
T Consensus 2 L~~Ldls~n~l~ 13 (22)
T PF00560_consen 2 LEYLDLSGNNLT 13 (22)
T ss_dssp ESEEEETSSEES
T ss_pred ccEEECCCCcCE
Confidence 334444444333
No 74
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=94.28 E-value=0.012 Score=31.95 Aligned_cols=10 Identities=60% Similarity=0.438 Sum_probs=3.8
Q ss_pred CeeeCCCCCC
Q 047332 570 SELDLSYNFL 579 (614)
Q Consensus 570 ~~L~L~~n~~ 579 (614)
++|||++|++
T Consensus 3 ~~Ldls~n~l 12 (22)
T PF00560_consen 3 EYLDLSGNNL 12 (22)
T ss_dssp SEEEETSSEE
T ss_pred cEEECCCCcC
Confidence 3333333333
No 75
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=93.29 E-value=0.00096 Score=69.21 Aligned_cols=183 Identities=30% Similarity=0.270 Sum_probs=105.6
Q ss_pred CCcEEEccCCcCCcccc----cccCCCCCCCEEECcCcccccccC----ccccCC-CCCcEEEcccCccccc----CCcc
Q 047332 400 SVERVLLNQNNLSGKVY----EAFGDHPNLTFLNLSQNNFCGEIS----FNWRNF-PKLGTFIVSVNNISGS----IPPE 466 (614)
Q Consensus 400 ~L~~L~l~~n~~~~~~~----~~~~~~~~L~~L~l~~~~~~~~~~----~~~~~~-~~L~~L~l~~~~~~~~----~~~~ 466 (614)
.+..+.+.+|.+..... ..+...+.|+.|++++|.+.+... ..+... ..+++|++..|.++.. +...
T Consensus 88 ~l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~ 167 (478)
T KOG4308|consen 88 SLLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAV 167 (478)
T ss_pred hHHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHH
Confidence 36778888887764433 345667888889999988864321 222332 5667777777776643 3344
Q ss_pred CCCCCCCCEEeCCCCcCcc----ccchhc----cCCCCCCEeeccCCccccC----ccccccCCCC-CCEEeCCCCcCcc
Q 047332 467 IGDSPKLQVLDLSSNSIVG----EIPVQL----GKLFSLNKLILNLNQLSGG----MPLELGSLTE-LQYLDLSANKLKS 533 (614)
Q Consensus 467 ~~~~~~L~~L~l~~~~~~~----~~~~~~----~~~~~L~~L~l~~n~~~~~----~~~~~~~l~~-L~~L~ls~n~l~~ 533 (614)
+.....++.++++.|.+.. .++..+ ....++++|++++|.++.. ....+...+. +..|++..|.+.+
T Consensus 168 L~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d 247 (478)
T KOG4308|consen 168 LEKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGD 247 (478)
T ss_pred HhcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcch
Confidence 5556777788888777631 112222 2356677777777766521 1122333344 5557777776654
Q ss_pred cC----Ccccccc-CCCCEEeCCCCcCCcCCCh----hhhcCCCCCeeeCCCCCCCCC
Q 047332 534 SI----PKSIGNL-LRLRYLDLSNNQFGHKIPI----ELEKLIHLSELDLSYNFLGEE 582 (614)
Q Consensus 534 ~~----~~~l~~l-~~L~~L~l~~n~~~~~~p~----~l~~l~~L~~L~L~~n~~~~~ 582 (614)
.. ...+..+ ..+++++++.|++++.... .+..++.++++.+++|.+...
T Consensus 248 ~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~~~ 305 (478)
T KOG4308|consen 248 VGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLTDY 305 (478)
T ss_pred HHHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCccccH
Confidence 31 1233334 4566777777776654333 334456667777777766443
No 76
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.17 E-value=0.0072 Score=53.38 Aligned_cols=84 Identities=20% Similarity=0.076 Sum_probs=56.7
Q ss_pred CCCCEeeccCCccccCccccccCCCCCCEEeCCCCcCccc-CCcccc-ccCCCCEEeCCCCc-CCcCCChhhhcCCCCCe
Q 047332 495 FSLNKLILNLNQLSGGMPLELGSLTELQYLDLSANKLKSS-IPKSIG-NLLRLRYLDLSNNQ-FGHKIPIELEKLIHLSE 571 (614)
Q Consensus 495 ~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~ls~n~l~~~-~~~~l~-~l~~L~~L~l~~n~-~~~~~p~~l~~l~~L~~ 571 (614)
..++.++-+++.+...-.+.+.+++.++.|.+.+|.-.+- --+.++ -.++|+.|++++|+ ||+.....+..+++|+.
T Consensus 101 ~~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~ 180 (221)
T KOG3864|consen 101 VKIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRR 180 (221)
T ss_pred ceEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHH
Confidence 3467778888887766666777788888888877753211 001111 24678888888775 77777777888888888
Q ss_pred eeCCCCC
Q 047332 572 LDLSYNF 578 (614)
Q Consensus 572 L~L~~n~ 578 (614)
|+|.+=+
T Consensus 181 L~l~~l~ 187 (221)
T KOG3864|consen 181 LHLYDLP 187 (221)
T ss_pred HHhcCch
Confidence 8776653
No 77
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.19 E-value=0.042 Score=48.72 Aligned_cols=85 Identities=28% Similarity=0.248 Sum_probs=62.1
Q ss_pred CCCCEEeCCCCcCccccchhccCCCCCCEeeccCCccccC-ccccc-cCCCCCCEEeCCCC-cCcccCCccccccCCCCE
Q 047332 471 PKLQVLDLSSNSIVGEIPVQLGKLFSLNKLILNLNQLSGG-MPLEL-GSLTELQYLDLSAN-KLKSSIPKSIGNLLRLRY 547 (614)
Q Consensus 471 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~-~~~~~-~~l~~L~~L~ls~n-~l~~~~~~~l~~l~~L~~ 547 (614)
..++.+|-+++.+..+-.+.+..+++++.|.+.+|.-.+. -.+.+ +-.++|+.|+|++| .|++..-.++..+++|+.
T Consensus 101 ~~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~ 180 (221)
T KOG3864|consen 101 VKIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRR 180 (221)
T ss_pred ceEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHH
Confidence 3477889999988877777888889999999988854321 00111 13478999999988 577666677888889999
Q ss_pred EeCCCCcC
Q 047332 548 LDLSNNQF 555 (614)
Q Consensus 548 L~l~~n~~ 555 (614)
|.+.+-+.
T Consensus 181 L~l~~l~~ 188 (221)
T KOG3864|consen 181 LHLYDLPY 188 (221)
T ss_pred HHhcCchh
Confidence 88886654
No 78
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=90.31 E-value=0.16 Score=25.54 Aligned_cols=10 Identities=50% Similarity=0.763 Sum_probs=3.0
Q ss_pred CCEEeCCCCC
Q 047332 113 LQYLDLGSNQ 122 (614)
Q Consensus 113 L~~L~Ls~n~ 122 (614)
|++|++++|+
T Consensus 3 L~~L~l~~n~ 12 (17)
T PF13504_consen 3 LRTLDLSNNR 12 (17)
T ss_dssp -SEEEETSS-
T ss_pred cCEEECCCCC
Confidence 3333333333
No 79
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=88.19 E-value=0.0055 Score=55.16 Aligned_cols=88 Identities=18% Similarity=0.212 Sum_probs=46.4
Q ss_pred cccCCCCCcEEECCCCCCCccCcccccCCCCCCEEeCCCCCCCCCCCcCCCCCCCCCEEEcccccCCCCCCccccCCCCC
Q 047332 82 AFSSFPHLVQLNLSFNIFFGIIPPQIGNLSKLQYLDLGSNQLSGVIPPEIGHLNQLRILYFDVNQLHGSIPPEIGQLSLI 161 (614)
Q Consensus 82 ~~~~l~~L~~L~Ls~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L 161 (614)
.+..+...++||++.|.+.. .-..|+-+..|..|+++.|.+. ..|.+++....++++++..|+.+ ..|.+++..+++
T Consensus 37 ei~~~kr~tvld~~s~r~vn-~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~ 113 (326)
T KOG0473|consen 37 EIASFKRVTVLDLSSNRLVN-LGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHP 113 (326)
T ss_pred hhhccceeeeehhhhhHHHh-hccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCc
Confidence 34444455555555554322 1223444455555566655555 45556655666666665555544 455556666666
Q ss_pred cEEEeccccCC
Q 047332 162 NVLALCHNNLY 172 (614)
Q Consensus 162 ~~L~l~~~~l~ 172 (614)
+++++.++.+.
T Consensus 114 k~~e~k~~~~~ 124 (326)
T KOG0473|consen 114 KKNEQKKTEFF 124 (326)
T ss_pred chhhhccCcch
Confidence 66666555443
No 80
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=86.86 E-value=0.51 Score=26.67 Aligned_cols=16 Identities=50% Similarity=0.470 Sum_probs=8.0
Q ss_pred CCCCeeeCCCCCCCCC
Q 047332 567 IHLSELDLSYNFLGEE 582 (614)
Q Consensus 567 ~~L~~L~L~~n~~~~~ 582 (614)
++|+.|+|++|++...
T Consensus 2 ~~L~~L~L~~N~l~~l 17 (26)
T smart00369 2 PNLRELDLSNNQLSSL 17 (26)
T ss_pred CCCCEEECCCCcCCcC
Confidence 3455555555555443
No 81
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=86.86 E-value=0.51 Score=26.67 Aligned_cols=16 Identities=50% Similarity=0.470 Sum_probs=8.0
Q ss_pred CCCCeeeCCCCCCCCC
Q 047332 567 IHLSELDLSYNFLGEE 582 (614)
Q Consensus 567 ~~L~~L~L~~n~~~~~ 582 (614)
++|+.|+|++|++...
T Consensus 2 ~~L~~L~L~~N~l~~l 17 (26)
T smart00370 2 PNLRELDLSNNQLSSL 17 (26)
T ss_pred CCCCEEECCCCcCCcC
Confidence 3455555555555443
No 82
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=86.16 E-value=0.14 Score=28.44 Aligned_cols=12 Identities=67% Similarity=0.805 Sum_probs=4.1
Q ss_pred CCCEEeCCCCcC
Q 047332 544 RLRYLDLSNNQF 555 (614)
Q Consensus 544 ~L~~L~l~~n~~ 555 (614)
+|++|+|++|++
T Consensus 3 ~L~~L~l~~n~i 14 (24)
T PF13516_consen 3 NLETLDLSNNQI 14 (24)
T ss_dssp T-SEEE-TSSBE
T ss_pred CCCEEEccCCcC
Confidence 334444444443
No 83
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=85.02 E-value=0.014 Score=52.57 Aligned_cols=89 Identities=22% Similarity=0.228 Sum_probs=64.4
Q ss_pred ccccCCCCCCEEeCCCCCCCCCCCcCCCCCCCCCEEEcccccCCCCCCccccCCCCCcEEEeccccCCCCCCcccCCCCC
Q 047332 105 PQIGNLSKLQYLDLGSNQLSGVIPPEIGHLNQLRILYFDVNQLHGSIPPEIGQLSLINVLALCHNNLYGSIPSSLGNLSN 184 (614)
Q Consensus 105 ~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~ 184 (614)
..+..+++.+.||++.|++. .+-..|..+..|..|+++.|.+. -.|..++....++.+++..|+.+ ..|.+++..++
T Consensus 36 ~ei~~~kr~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~ 112 (326)
T KOG0473|consen 36 REIASFKRVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPH 112 (326)
T ss_pred hhhhccceeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCC
Confidence 35566778888888888776 34456677778888888888776 67777777777777877777665 56667777777
Q ss_pred CcEEEeecCCCc
Q 047332 185 LANFYFNNNSLF 196 (614)
Q Consensus 185 L~~L~l~~~~~~ 196 (614)
+++++..++.+.
T Consensus 113 ~k~~e~k~~~~~ 124 (326)
T KOG0473|consen 113 PKKNEQKKTEFF 124 (326)
T ss_pred cchhhhccCcch
Confidence 777777766543
No 84
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=84.15 E-value=0.99 Score=25.43 Aligned_cols=16 Identities=56% Similarity=0.611 Sum_probs=9.0
Q ss_pred CCCCEEeCCCCcCCcC
Q 047332 543 LRLRYLDLSNNQFGHK 558 (614)
Q Consensus 543 ~~L~~L~l~~n~~~~~ 558 (614)
++|+.|+|++|++...
T Consensus 2 ~~L~~L~L~~N~l~~l 17 (26)
T smart00369 2 PNLRELDLSNNQLSSL 17 (26)
T ss_pred CCCCEEECCCCcCCcC
Confidence 4556666666666433
No 85
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=84.15 E-value=0.99 Score=25.43 Aligned_cols=16 Identities=56% Similarity=0.611 Sum_probs=9.0
Q ss_pred CCCCEEeCCCCcCCcC
Q 047332 543 LRLRYLDLSNNQFGHK 558 (614)
Q Consensus 543 ~~L~~L~l~~n~~~~~ 558 (614)
++|+.|+|++|++...
T Consensus 2 ~~L~~L~L~~N~l~~l 17 (26)
T smart00370 2 PNLRELDLSNNQLSSL 17 (26)
T ss_pred CCCCEEECCCCcCCcC
Confidence 4556666666666433
No 86
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=76.30 E-value=15 Score=37.63 Aligned_cols=108 Identities=18% Similarity=0.116 Sum_probs=54.3
Q ss_pred CCCCCEeecCCCcccccCCccccCCCCCCEEEccCCcccccCcccc---cCCCCCcEEEcccccCCccCCccccC---CC
Q 047332 302 LKSLSALGLHINQLSGVIPSSIGNLSSLRALYLYNNGLCGFVPEEI---RYLKSLSELELCKNHLSGVIPHSIGN---LT 375 (614)
Q Consensus 302 l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~---~~~~~L~~L~l~~n~~~~~~~~~~~~---l~ 375 (614)
-+.+++++++.|.+....|-.+..-.. -+.++.|+.++.....+ ..-..+.+++++.|.....+|..... -.
T Consensus 164 npr~r~~dls~npi~dkvpihl~~p~~--pl~lr~c~lsskfis~l~~qsg~~~lteldls~n~~Kddip~~~n~~a~~~ 241 (553)
T KOG4242|consen 164 NPRARQHDLSPNPIGDKVPIHLPQPGN--PLSLRVCELSSKFISKLLIQSGRLWLTELDLSTNGGKDDIPRTLNKKAGTL 241 (553)
T ss_pred cchhhhhccCCCcccccCCccccCCCC--ccchhhhhhhhhHHHHhhhhhccccccccccccCCCCccchhHHHHhhhhh
Confidence 366788888888887766655432111 14455555443211110 11124677888887766655543322 22
Q ss_pred CCCEEECcCCCCCC--CC-CccccCCCCCcEEEccCCcC
Q 047332 376 GLLLLNMCENHLSG--PI-PKSFKNLTSVERVLLNQNNL 411 (614)
Q Consensus 376 ~L~~L~ls~n~l~~--~~-~~~~~~~~~L~~L~l~~n~~ 411 (614)
.++.++.+...+.- .. +-.++.-+.++..+++.|..
T Consensus 242 vl~~ld~s~tgirlD~l~~~l~~g~~tkl~~~kls~ng~ 280 (553)
T KOG4242|consen 242 VLFKLDRSTTGIRLDLLTSPLAAGRTTKLTFGKLSRNGT 280 (553)
T ss_pred hhhcccccccccchhhcccccccccccccchhhhccCCC
Confidence 35555555543321 11 11223335566666666544
No 87
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=67.55 E-value=3.9 Score=23.12 Aligned_cols=18 Identities=39% Similarity=0.589 Sum_probs=11.0
Q ss_pred CCCCeEECcCCCCcccCCC
Q 047332 591 KSLEKLNLCHNNLLGSFQQ 609 (614)
Q Consensus 591 ~sL~~L~l~~n~l~~~ip~ 609 (614)
++|+.|++++|+++ ++|+
T Consensus 2 ~~L~~L~vs~N~Lt-~LPe 19 (26)
T smart00364 2 PSLKELNVSNNQLT-SLPE 19 (26)
T ss_pred cccceeecCCCccc-cCcc
Confidence 35666666666655 5554
No 88
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=61.68 E-value=6.6 Score=22.26 Aligned_cols=14 Identities=50% Similarity=0.567 Sum_probs=9.6
Q ss_pred CCCCeeeCCCCCCC
Q 047332 567 IHLSELDLSYNFLG 580 (614)
Q Consensus 567 ~~L~~L~L~~n~~~ 580 (614)
++|+.|++++|+|.
T Consensus 2 ~~L~~L~L~~NkI~ 15 (26)
T smart00365 2 TNLEELDLSQNKIK 15 (26)
T ss_pred CccCEEECCCCccc
Confidence 46777777777763
No 89
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=58.32 E-value=9.2 Score=22.01 Aligned_cols=14 Identities=43% Similarity=0.643 Sum_probs=7.4
Q ss_pred CCCCEEeCCCCCCC
Q 047332 111 SKLQYLDLGSNQLS 124 (614)
Q Consensus 111 ~~L~~L~Ls~n~l~ 124 (614)
++|++|+|++|.+.
T Consensus 2 ~~L~~LdL~~N~i~ 15 (28)
T smart00368 2 PSLRELDLSNNKLG 15 (28)
T ss_pred CccCEEECCCCCCC
Confidence 34555555555554
No 90
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=51.66 E-value=11 Score=21.19 Aligned_cols=13 Identities=23% Similarity=0.347 Sum_probs=10.4
Q ss_pred CCCCCeEECcCCC
Q 047332 590 VKSLEKLNLCHNN 602 (614)
Q Consensus 590 l~sL~~L~l~~n~ 602 (614)
+++|++|+|++|+
T Consensus 1 c~~L~~L~l~~C~ 13 (26)
T smart00367 1 CPNLRELDLSGCT 13 (26)
T ss_pred CCCCCEeCCCCCC
Confidence 4678888888886
No 91
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=49.66 E-value=32 Score=35.33 Aligned_cols=19 Identities=21% Similarity=0.135 Sum_probs=9.6
Q ss_pred CCCcEEEccCCcCCccccc
Q 047332 399 TSVERVLLNQNNLSGKVYE 417 (614)
Q Consensus 399 ~~L~~L~l~~n~~~~~~~~ 417 (614)
+.+++++++.|.+....+.
T Consensus 165 pr~r~~dls~npi~dkvpi 183 (553)
T KOG4242|consen 165 PRARQHDLSPNPIGDKVPI 183 (553)
T ss_pred chhhhhccCCCcccccCCc
Confidence 3445555555555544443
No 92
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=37.57 E-value=14 Score=38.63 Aligned_cols=37 Identities=32% Similarity=0.257 Sum_probs=21.3
Q ss_pred CCCCCCEEECcCccccccc--CccccCCCCCcEEEcccC
Q 047332 421 DHPNLTFLNLSQNNFCGEI--SFNWRNFPKLGTFIVSVN 457 (614)
Q Consensus 421 ~~~~L~~L~l~~~~~~~~~--~~~~~~~~~L~~L~l~~~ 457 (614)
+.|.+..+.+++|++.... ...-...|+|.+|+|++|
T Consensus 216 n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N 254 (585)
T KOG3763|consen 216 NFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHN 254 (585)
T ss_pred CCcceeeeecccchhhchhhhhHHHHhcchhheeecccc
Confidence 4567777778888765321 122233556666666665
No 93
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=36.41 E-value=19 Score=37.60 Aligned_cols=65 Identities=32% Similarity=0.334 Sum_probs=44.1
Q ss_pred cCCCCCCEEeCCCCcCccc--CCccccccCCCCEEeCCCC--cCCcCCChhhhc--CCCCCeeeCCCCCCCCC
Q 047332 516 GSLTELQYLDLSANKLKSS--IPKSIGNLLRLRYLDLSNN--QFGHKIPIELEK--LIHLSELDLSYNFLGEE 582 (614)
Q Consensus 516 ~~l~~L~~L~ls~n~l~~~--~~~~l~~l~~L~~L~l~~n--~~~~~~p~~l~~--l~~L~~L~L~~n~~~~~ 582 (614)
.+.+.+..+.+++|++-.. +..--...+.|+.|+|++| .+... .++.+ ...|++|-+.+|++...
T Consensus 215 ~n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~--~el~K~k~l~Leel~l~GNPlc~t 285 (585)
T KOG3763|consen 215 ENFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSE--SELDKLKGLPLEELVLEGNPLCTT 285 (585)
T ss_pred cCCcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcch--hhhhhhcCCCHHHeeecCCccccc
Confidence 4667888999999987643 1112234689999999999 44222 22332 34688999999998765
Done!