Query 047332
Match_columns 614
No_of_seqs 406 out of 4133
Neff 10.4
Searched_HMMs 29240
Date Mon Mar 25 17:42:20 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047332.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/047332hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rgz_A Protein brassinosteroid 100.0 3.3E-81 1.1E-85 697.7 46.0 590 3-612 8-725 (768)
2 3rgz_A Protein brassinosteroid 100.0 9.9E-67 3.4E-71 581.1 40.6 537 62-602 100-738 (768)
3 1ziw_A TOLL-like receptor 3; i 100.0 3.7E-60 1.3E-64 523.8 51.3 547 62-609 25-627 (680)
4 1ziw_A TOLL-like receptor 3; i 100.0 6.2E-58 2.1E-62 506.0 52.8 538 67-608 9-601 (680)
5 3t6q_A CD180 antigen; protein- 100.0 5.3E-58 1.8E-62 499.9 41.7 516 87-608 33-564 (606)
6 3t6q_A CD180 antigen; protein- 100.0 8.2E-56 2.8E-60 482.6 43.1 516 62-584 33-564 (606)
7 3vq2_A TLR4, TOLL-like recepto 100.0 1.8E-55 6.2E-60 479.8 40.3 528 66-608 15-562 (606)
8 3vq2_A TLR4, TOLL-like recepto 100.0 2E-54 6.8E-59 471.7 39.4 511 62-584 32-562 (606)
9 4eco_A Uncharacterized protein 100.0 6.5E-56 2.2E-60 482.7 22.1 484 5-557 28-601 (636)
10 3j0a_A TOLL-like receptor 5; m 100.0 3.1E-53 1.1E-57 477.2 41.7 509 86-608 23-564 (844)
11 4ecn_A Leucine-rich repeat pro 100.0 7.4E-53 2.5E-57 465.3 30.3 502 5-532 267-864 (876)
12 3j0a_A TOLL-like receptor 5; m 100.0 1.4E-51 4.7E-56 463.8 39.8 515 51-581 14-561 (844)
13 2z63_A TOLL-like receptor 4, v 100.0 6.3E-50 2.1E-54 433.2 38.2 510 89-610 9-537 (570)
14 2z63_A TOLL-like receptor 4, v 100.0 5.4E-50 1.8E-54 433.7 34.6 490 87-585 28-536 (570)
15 2z81_A CD282 antigen, TOLL-lik 100.0 2.7E-48 9.4E-53 418.2 34.9 491 50-584 3-514 (549)
16 2z81_A CD282 antigen, TOLL-lik 100.0 1.8E-48 6.2E-53 419.6 31.1 488 87-608 5-514 (549)
17 4eco_A Uncharacterized protein 100.0 3.1E-49 1.1E-53 430.1 17.2 480 87-603 81-631 (636)
18 4g8a_A TOLL-like receptor 4; l 100.0 4.8E-45 1.7E-49 400.4 43.2 511 87-606 52-582 (635)
19 2z7x_B TOLL-like receptor 1, v 100.0 1.2E-46 4.1E-51 402.4 27.5 453 114-607 3-484 (520)
20 2z7x_B TOLL-like receptor 1, v 100.0 3.2E-46 1.1E-50 399.1 29.4 452 90-559 3-484 (520)
21 4ecn_A Leucine-rich repeat pro 100.0 7E-46 2.4E-50 409.8 26.9 464 87-579 323-863 (876)
22 4g8a_A TOLL-like receptor 4; l 100.0 2.6E-43 8.9E-48 386.6 38.3 508 63-580 53-580 (635)
23 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 8.3E-43 2.8E-47 375.7 27.6 461 109-608 29-514 (562)
24 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 3.2E-42 1.1E-46 371.0 27.6 457 85-560 29-514 (562)
25 3v47_A TOLL-like receptor 5B a 100.0 4.4E-40 1.5E-44 345.6 32.2 382 210-609 13-413 (455)
26 1ogq_A PGIP-2, polygalacturona 100.0 4.6E-41 1.6E-45 333.5 21.1 292 3-314 2-302 (313)
27 1jl5_A Outer protein YOPM; leu 100.0 5.4E-40 1.9E-44 341.8 25.6 425 109-612 9-437 (454)
28 3v47_A TOLL-like receptor 5B a 100.0 3.4E-39 1.1E-43 338.9 31.3 381 186-584 13-412 (455)
29 1jl5_A Outer protein YOPM; leu 100.0 1.1E-39 3.9E-44 339.4 24.8 425 85-588 9-437 (454)
30 1o6v_A Internalin A; bacterial 100.0 3.9E-36 1.3E-40 315.8 32.9 346 205-581 44-389 (466)
31 3bz5_A Internalin-J, INLJ; leu 100.0 2.2E-36 7.5E-41 314.9 30.3 231 149-407 32-262 (457)
32 3bz5_A Internalin-J, INLJ; leu 100.0 5.2E-36 1.8E-40 312.1 29.8 357 82-538 37-393 (457)
33 1o6v_A Internalin A; bacterial 100.0 1.2E-35 4.1E-40 312.1 32.3 346 181-557 44-389 (466)
34 2id5_A Lingo-1, leucine rich r 100.0 8.9E-36 3.1E-40 314.5 28.6 323 257-582 13-335 (477)
35 2id5_A Lingo-1, leucine rich r 100.0 1.6E-35 5.6E-40 312.5 27.6 323 234-559 14-336 (477)
36 3o6n_A APL1; leucine-rich repe 100.0 6.2E-34 2.1E-38 292.2 27.9 290 84-388 42-331 (390)
37 3oja_B Anopheles plasmodium-re 100.0 2.6E-33 9E-38 303.1 29.4 289 85-388 49-337 (597)
38 4fmz_A Internalin; leucine ric 100.0 6E-33 2E-37 280.3 29.4 306 252-604 41-346 (347)
39 3o6n_A APL1; leucine-rich repe 100.0 4.8E-33 1.6E-37 285.6 26.9 310 254-581 44-353 (390)
40 4fmz_A Internalin; leucine ric 100.0 1.7E-32 5.7E-37 277.1 29.4 308 226-580 39-346 (347)
41 4fcg_A Uncharacterized protein 100.0 4.2E-34 1.4E-38 285.0 17.3 280 3-313 23-311 (328)
42 3oja_B Anopheles plasmodium-re 100.0 8.8E-33 3E-37 299.0 27.4 309 254-580 50-358 (597)
43 1ogq_A PGIP-2, polygalacturona 100.0 1.9E-32 6.5E-37 271.5 15.8 251 352-605 51-306 (313)
44 2ft3_A Biglycan; proteoglycan, 100.0 1.6E-30 5.5E-35 260.5 27.8 290 280-602 34-331 (332)
45 1xku_A Decorin; proteoglycan, 100.0 3.9E-30 1.3E-34 257.6 29.8 269 327-602 52-330 (330)
46 1xku_A Decorin; proteoglycan, 100.0 5.9E-30 2E-34 256.2 29.7 245 88-366 32-278 (330)
47 1z7x_W Ribonuclease inhibitor; 100.0 1.2E-34 4E-39 304.9 -4.8 355 207-581 3-412 (461)
48 1z7x_W Ribonuclease inhibitor; 100.0 2.8E-34 9.5E-39 302.0 -2.4 379 182-580 2-440 (461)
49 2ft3_A Biglycan; proteoglycan, 100.0 4.3E-30 1.5E-34 257.4 28.0 288 256-578 34-331 (332)
50 3ogk_B Coronatine-insensitive 100.0 3.3E-32 1.1E-36 295.6 -3.2 407 152-582 66-528 (592)
51 3ogk_B Coronatine-insensitive 100.0 9.7E-32 3.3E-36 291.9 -2.4 376 229-606 110-528 (592)
52 2z66_A Variable lymphocyte rec 100.0 1.5E-28 5E-33 243.4 16.9 250 51-316 7-261 (306)
53 2z80_A TOLL-like receptor 2, v 100.0 1.2E-28 4.2E-33 249.0 16.1 279 301-582 29-316 (353)
54 2z66_A Variable lymphocyte rec 100.0 1.5E-27 5E-32 236.2 23.3 248 331-605 11-262 (306)
55 4fcg_A Uncharacterized protein 100.0 5.2E-28 1.8E-32 240.9 20.2 237 85-341 79-315 (328)
56 2z80_A TOLL-like receptor 2, v 100.0 7.5E-28 2.6E-32 243.3 17.8 280 277-560 29-318 (353)
57 3zyj_A Leucine-rich repeat-con 100.0 1.8E-26 6.2E-31 240.3 26.4 246 329-579 45-291 (440)
58 1ozn_A Reticulon 4 receptor; N 99.9 2.8E-27 9.6E-32 231.5 18.3 225 65-293 14-239 (285)
59 3zyi_A Leucine-rich repeat-con 99.9 2.3E-26 7.9E-31 240.3 26.4 248 329-604 56-303 (452)
60 1ozn_A Reticulon 4 receptor; N 99.9 7.4E-27 2.5E-31 228.5 20.7 205 327-531 32-237 (285)
61 3zyi_A Leucine-rich repeat-con 99.9 4.4E-26 1.5E-30 238.2 25.7 245 66-316 58-303 (452)
62 3zyj_A Leucine-rich repeat-con 99.9 9.9E-26 3.4E-30 234.7 27.0 243 66-314 47-290 (440)
63 3o53_A Protein LRIM1, AGAP0063 99.9 4.9E-28 1.7E-32 240.5 5.1 266 305-584 12-280 (317)
64 2p1m_B Transport inhibitor res 99.9 9.2E-30 3.2E-34 276.5 -8.1 413 138-555 46-518 (594)
65 2p1m_B Transport inhibitor res 99.9 2.4E-29 8.1E-34 273.3 -5.5 436 162-602 46-542 (594)
66 2o6q_A Variable lymphocyte rec 99.9 2.1E-25 7.3E-30 216.1 22.8 216 48-267 2-217 (270)
67 1wwl_A Monocyte differentiatio 99.9 3.9E-28 1.3E-32 240.6 2.9 249 85-364 41-309 (312)
68 1wwl_A Monocyte differentiatio 99.9 9.7E-28 3.3E-32 237.7 4.2 253 324-605 40-310 (312)
69 3o53_A Protein LRIM1, AGAP0063 99.9 2.2E-27 7.6E-32 235.7 4.2 253 333-599 16-270 (317)
70 3g06_A SSPH2 (leucine-rich rep 99.9 5.7E-24 2E-28 227.7 29.6 268 279-590 40-307 (622)
71 3g06_A SSPH2 (leucine-rich rep 99.9 7.3E-24 2.5E-28 226.9 28.9 268 256-567 41-308 (622)
72 3oja_A Leucine-rich immune mol 99.9 3.7E-26 1.3E-30 240.0 9.5 237 325-575 32-270 (487)
73 2z62_A TOLL-like receptor 4, v 99.9 5E-24 1.7E-28 207.3 22.4 208 400-608 29-241 (276)
74 3oja_A Leucine-rich immune mol 99.9 7E-25 2.4E-29 230.3 14.7 238 348-599 31-270 (487)
75 2o6q_A Variable lymphocyte rec 99.9 9.6E-23 3.3E-27 197.4 24.0 203 376-581 17-219 (270)
76 2z62_A TOLL-like receptor 4, v 99.9 3.4E-23 1.2E-27 201.4 20.6 207 351-581 28-238 (276)
77 3rfs_A Internalin B, repeat mo 99.9 2.5E-23 8.6E-28 201.6 17.0 227 353-592 21-247 (272)
78 3rfs_A Internalin B, repeat mo 99.9 4.9E-23 1.7E-27 199.6 17.5 209 83-326 37-245 (272)
79 2ast_B S-phase kinase-associat 99.9 3E-25 1E-29 222.8 0.6 212 48-265 34-257 (336)
80 1p9a_G Platelet glycoprotein I 99.9 5.3E-22 1.8E-26 193.7 22.2 202 371-579 6-207 (290)
81 2ast_B S-phase kinase-associat 99.9 7E-24 2.4E-28 212.8 7.0 253 328-588 48-314 (336)
82 1p9a_G Platelet glycoprotein I 99.9 1.4E-21 4.8E-26 190.8 21.9 132 83-220 6-137 (290)
83 3m19_A Variable lymphocyte rec 99.9 7.9E-22 2.7E-26 188.7 19.1 192 49-246 3-194 (251)
84 4glp_A Monocyte differentiatio 99.9 5.2E-22 1.8E-26 196.4 17.2 226 88-341 65-308 (310)
85 2ca6_A RAN GTPase-activating p 99.9 1.9E-24 6.5E-29 221.1 -0.7 241 343-583 24-319 (386)
86 3goz_A Leucine-rich repeat-con 99.9 5.5E-24 1.9E-28 215.4 2.6 254 307-560 2-301 (362)
87 3goz_A Leucine-rich repeat-con 99.9 8E-24 2.7E-28 214.2 3.2 254 331-584 2-301 (362)
88 3m19_A Variable lymphocyte rec 99.9 4.4E-21 1.5E-25 183.5 20.6 180 400-582 15-194 (251)
89 2ca6_A RAN GTPase-activating p 99.9 1.2E-23 4.2E-28 215.1 2.1 258 320-577 25-340 (386)
90 2xwt_C Thyrotropin receptor; s 99.9 2E-21 6.8E-26 184.5 17.2 197 87-289 31-236 (239)
91 4glp_A Monocyte differentiatio 99.9 6.5E-22 2.2E-26 195.7 14.3 205 375-605 91-308 (310)
92 2xwt_C Thyrotropin receptor; s 99.9 2.2E-21 7.6E-26 184.2 15.1 197 400-602 32-237 (239)
93 1h6u_A Internalin H; cell adhe 99.9 1.1E-20 3.8E-25 186.2 17.9 195 82-292 36-230 (308)
94 1h6u_A Internalin H; cell adhe 99.9 9.2E-21 3.1E-25 186.9 17.1 195 371-581 37-231 (308)
95 2o6s_A Variable lymphocyte rec 99.8 1.3E-20 4.6E-25 174.6 15.9 185 50-256 6-190 (208)
96 4ay9_X Follicle-stimulating ho 99.8 5.2E-19 1.8E-23 177.8 19.1 239 306-552 12-255 (350)
97 2o6s_A Variable lymphocyte rec 99.8 2.6E-19 9E-24 165.9 15.5 172 423-605 28-199 (208)
98 3cvr_A Invasion plasmid antige 99.8 9.4E-20 3.2E-24 192.6 13.6 196 52-277 49-252 (571)
99 3e6j_A Variable lymphocyte rec 99.8 2E-18 7E-23 162.2 18.2 159 47-221 15-173 (229)
100 4ay9_X Follicle-stimulating ho 99.8 2E-18 7E-23 173.5 18.5 240 330-577 12-256 (350)
101 2v70_A SLIT-2, SLIT homolog 2 99.8 1.4E-18 4.7E-23 162.2 15.8 136 472-607 33-169 (220)
102 3cvr_A Invasion plasmid antige 99.8 2.1E-18 7.2E-23 182.3 18.6 187 376-590 60-253 (571)
103 2v9t_B SLIT homolog 2 protein 99.8 3E-18 1E-22 159.9 16.5 134 471-604 32-165 (220)
104 3e6j_A Variable lymphocyte rec 99.8 7.2E-18 2.5E-22 158.4 17.7 136 471-607 40-175 (229)
105 1h6t_A Internalin B; cell adhe 99.8 1.9E-18 6.4E-23 168.7 13.8 171 83-267 42-212 (291)
106 1h6t_A Internalin B; cell adhe 99.8 5.9E-18 2E-22 165.2 15.3 174 395-582 42-215 (291)
107 4b8c_D Glucose-repressible alc 99.8 1.5E-19 5E-24 198.5 3.1 230 5-265 130-369 (727)
108 1m9s_A Internalin B; cell inva 99.7 1.4E-17 4.9E-22 178.0 17.3 174 82-269 38-211 (605)
109 4ezg_A Putative uncharacterize 99.7 6.3E-18 2.2E-22 155.0 12.4 154 445-605 42-195 (197)
110 2xot_A Amphoterin-induced prot 99.7 1E-17 3.6E-22 169.0 14.5 175 402-579 21-201 (361)
111 2v9t_B SLIT homolog 2 protein 99.7 3.1E-17 1.1E-21 152.9 16.6 153 402-557 14-166 (220)
112 1m9s_A Internalin B; cell inva 99.7 1.5E-17 5E-22 178.0 15.5 192 88-295 22-213 (605)
113 2v70_A SLIT-2, SLIT homolog 2 99.7 3E-17 1E-21 153.1 15.7 156 402-560 14-170 (220)
114 2xot_A Amphoterin-induced prot 99.7 5.9E-17 2E-21 163.5 16.2 178 378-558 21-204 (361)
115 4ezg_A Putative uncharacterize 99.7 3.8E-17 1.3E-21 149.7 12.8 152 422-581 43-195 (197)
116 3sb4_A Hypothetical leucine ri 99.7 1.4E-17 4.9E-22 165.9 8.9 287 302-598 24-328 (329)
117 1w8a_A SLIT protein; signaling 99.7 1.6E-16 5.5E-21 144.7 13.2 130 450-582 11-141 (192)
118 1xeu_A Internalin C; cellular 99.7 7.1E-17 2.4E-21 154.9 10.7 170 398-582 18-187 (263)
119 1xeu_A Internalin C; cellular 99.7 6.8E-17 2.3E-21 155.1 9.1 168 86-268 18-185 (263)
120 2ell_A Acidic leucine-rich nuc 99.7 1.8E-16 6.2E-21 141.2 10.4 138 470-610 23-165 (168)
121 3sb4_A Hypothetical leucine ri 99.7 8.1E-17 2.8E-21 160.4 8.8 58 254-312 100-157 (329)
122 1dce_A Protein (RAB geranylger 99.7 2.9E-19 9.8E-24 190.0 -10.0 217 348-598 346-567 (567)
123 4fs7_A Uncharacterized protein 99.7 5.9E-15 2E-19 150.8 22.3 313 78-431 62-374 (394)
124 1dce_A Protein (RAB geranylger 99.7 2.6E-19 8.9E-24 190.4 -10.5 217 324-574 346-567 (567)
125 4fs7_A Uncharacterized protein 99.7 1.8E-14 6.3E-19 147.1 24.8 322 63-428 72-393 (394)
126 4fdw_A Leucine rich hypothetic 99.6 2.2E-14 7.4E-19 145.8 23.7 262 303-601 113-380 (401)
127 2ell_A Acidic leucine-rich nuc 99.6 8E-16 2.7E-20 137.0 11.5 134 85-220 22-160 (168)
128 2je0_A Acidic leucine-rich nuc 99.6 3.9E-16 1.3E-20 136.0 8.5 127 471-599 17-148 (149)
129 2o6r_A Variable lymphocyte rec 99.6 2.6E-15 8.8E-20 134.9 14.1 112 496-607 29-140 (177)
130 2wfh_A SLIT homolog 2 protein 99.6 3.3E-15 1.1E-19 135.9 14.5 108 496-604 32-139 (193)
131 4fdw_A Leucine rich hypothetic 99.6 6.8E-14 2.3E-18 142.1 24.8 269 85-385 111-380 (401)
132 2je0_A Acidic leucine-rich nuc 99.6 1.3E-15 4.3E-20 132.7 10.3 129 446-576 16-149 (149)
133 4b8c_D Glucose-repressible alc 99.6 1E-16 3.5E-21 175.9 4.0 191 87-289 173-369 (727)
134 1w8a_A SLIT protein; signaling 99.6 3E-15 1E-19 136.2 13.1 132 426-560 11-143 (192)
135 2wfh_A SLIT homolog 2 protein 99.6 2.7E-14 9.4E-19 129.8 14.0 127 426-556 13-139 (193)
136 2o6r_A Variable lymphocyte rec 99.6 4.1E-14 1.4E-18 127.0 13.9 130 426-558 10-139 (177)
137 1a9n_A U2A', U2A'; complex (nu 99.5 2.6E-14 8.7E-19 128.2 9.2 128 470-602 18-151 (176)
138 1a9n_A U2A', U2A'; complex (nu 99.5 7.6E-14 2.6E-18 125.1 9.9 133 443-580 15-153 (176)
139 4gt6_A Cell surface protein; l 99.5 5.5E-12 1.9E-16 128.7 23.7 333 246-603 54-390 (394)
140 3g39_A Variable lymphocyte rec 99.5 3.4E-13 1.2E-17 119.9 12.2 107 473-582 11-117 (170)
141 1ds9_A Outer arm dynein; leuci 99.4 4.3E-16 1.5E-20 142.8 -8.4 130 86-220 17-153 (198)
142 4gt6_A Cell surface protein; l 99.4 1.2E-11 4.1E-16 126.2 23.3 331 79-458 55-389 (394)
143 2r9u_A Variable lymphocyte rec 99.4 1E-12 3.4E-17 117.2 12.3 105 474-581 15-119 (174)
144 1ds9_A Outer arm dynein; leuci 99.4 1.3E-15 4.5E-20 139.5 -7.1 136 107-247 14-156 (198)
145 3g39_A Variable lymphocyte rec 99.4 2.2E-12 7.6E-17 114.5 11.8 108 449-559 11-118 (170)
146 2r9u_A Variable lymphocyte rec 99.4 4E-12 1.4E-16 113.3 11.8 106 450-558 15-120 (174)
147 3un9_A NLR family member X1; l 99.3 1.3E-13 4.4E-18 138.7 -3.2 158 447-604 101-283 (372)
148 3un9_A NLR family member X1; l 99.3 1.8E-13 6.1E-18 137.7 -2.3 160 446-605 71-253 (372)
149 4h09_A Hypothetical leucine ri 99.2 3.2E-09 1.1E-13 107.6 26.4 128 250-385 41-168 (379)
150 4h09_A Hypothetical leucine ri 99.2 4E-09 1.4E-13 106.9 26.7 316 225-566 40-355 (379)
151 2ifg_A High affinity nerve gro 99.2 9E-11 3.1E-15 117.6 11.4 104 475-581 12-117 (347)
152 2ifg_A High affinity nerve gro 99.1 2.2E-10 7.5E-15 114.7 11.4 106 450-558 11-118 (347)
153 2ra8_A Uncharacterized protein 98.9 4.7E-10 1.6E-14 111.6 2.8 65 517-581 250-321 (362)
154 2ra8_A Uncharacterized protein 98.9 5.5E-10 1.9E-14 111.2 2.8 205 61-290 106-341 (362)
155 1io0_A Tropomodulin; LRR prote 98.6 7.9E-09 2.7E-13 92.8 1.8 113 467-579 32-163 (185)
156 1io0_A Tropomodulin; LRR prote 98.6 2E-08 6.8E-13 90.1 3.8 117 488-604 29-164 (185)
157 3rw6_A Nuclear RNA export fact 98.3 7.6E-08 2.6E-12 90.6 0.7 80 516-597 167-257 (267)
158 3e4g_A ATP synthase subunit S, 98.3 6.5E-08 2.2E-12 84.3 0.2 85 495-579 61-151 (176)
159 3rw6_A Nuclear RNA export fact 98.3 1.6E-07 5.6E-12 88.3 2.0 81 492-574 167-258 (267)
160 3e4g_A ATP synthase subunit S, 98.2 2E-07 7E-12 81.1 1.3 84 471-554 61-150 (176)
161 1pgv_A TMD-1, tropomodulin TMD 97.4 4.7E-05 1.6E-09 67.5 2.6 63 515-577 66-136 (197)
162 1pgv_A TMD-1, tropomodulin TMD 97.3 0.00012 4.2E-09 64.9 3.9 108 471-578 41-168 (197)
163 3rfe_A Platelet glycoprotein I 96.7 0.003 1E-07 52.2 6.3 56 522-579 11-67 (130)
164 3rfe_A Platelet glycoprotein I 96.4 0.007 2.4E-07 49.9 6.7 56 499-556 12-68 (130)
165 2lz0_A Uncharacterized protein 67.9 14 0.00048 28.1 6.4 44 100-144 9-52 (100)
166 2lz0_A Uncharacterized protein 63.5 21 0.00071 27.2 6.6 46 123-169 8-53 (100)
No 1
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=3.3e-81 Score=697.69 Aligned_cols=590 Identities=32% Similarity=0.476 Sum_probs=465.0
Q ss_pred CCchHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccceeeCCCCCEEEEEcCCCCCCcc---cC
Q 047332 3 SDSSKETFALLKWKRSLQNKNISLLSSWTLHPDNASNVPSYSKSKISPCAWLGISCNQAGRVISINLSSMALNGT---LQ 79 (614)
Q Consensus 3 ~~~~~~~~~l~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~c~w~~~~c~~~~~v~~l~l~~~~l~~~---~~ 79 (614)
++.++||+||++||+++.+ |. .+++|+ . +.+||.|.||.|+ .++|++|+|+++++.|. ++
T Consensus 8 ~~~~~~~~all~~k~~~~~-~~-~l~~W~--~------------~~~~C~w~gv~C~-~~~v~~L~L~~~~l~g~~~~l~ 70 (768)
T 3rgz_A 8 QSLYREIHQLISFKDVLPD-KN-LLPDWS--S------------NKNPCTFDGVTCR-DDKVTSIDLSSKPLNVGFSAVS 70 (768)
T ss_dssp CCHHHHHHHHHHHHTTCSC-TT-SSTTCC--T------------TSCGGGSTTEEEE-TTEEEEEECTTSCCCEEHHHHH
T ss_pred cCCHHHHHHHHHHHhhCCC-cc-cccCCC--C------------CCCCcCCcceEEC-CCcEEEEECCCCCcCCccCccC
Confidence 4477899999999999985 66 899997 3 6789999999998 78999999999999886 43
Q ss_pred c----------------------ccccCCCCCcEEECCCCCCCccCcc--cccCCCCCCEEeCCCCCCCCCCCcCC-CCC
Q 047332 80 E----------------------FAFSSFPHLVQLNLSFNIFFGIIPP--QIGNLSKLQYLDLGSNQLSGVIPPEI-GHL 134 (614)
Q Consensus 80 ~----------------------~~~~~l~~L~~L~Ls~~~~~~~~~~--~l~~l~~L~~L~Ls~n~l~~~~~~~l-~~l 134 (614)
+ ..++.+++|++|+|++|.+.+.+|. .++++++|++|++++|.+.+.+|..+ .++
T Consensus 71 ~~l~~L~~L~~l~~~~~~~~~l~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l 150 (768)
T 3rgz_A 71 SSLLSLTGLESLFLSNSHINGSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKL 150 (768)
T ss_dssp HHTTTCTTCCEEECTTSCEEECCCCCCCCTTCCEEECCSSEEEEEGGGGGGGGGCTTCCEEECCSSEEECCSSCCSCCCC
T ss_pred hhHhccCcccccCCcCCCcCCCchhhccCCCCCEEECCCCcCCCcCCChHHHhCCCCCCEEECcCCccCCcCCHHHhccC
Confidence 2 2678889999999999999888887 88999999999999998887777665 778
Q ss_pred CCCCEEEcccccCCCCCCcc---ccCCCCCcEEEeccccCCCCCCcccCCCCCCcEEEeecCCCcccCCccccCCCCCCe
Q 047332 135 NQLRILYFDVNQLHGSIPPE---IGQLSLINVLALCHNNLYGSIPSSLGNLSNLANFYFNNNSLFDSIPLVLGNLNSLST 211 (614)
Q Consensus 135 ~~L~~L~l~~n~~~~~~~~~---~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~ 211 (614)
++|++|++++|.+++..|.. +.++++|++|++++|.+++..+. ..+++|++|++++|.+.+.+|. ++++++|++
T Consensus 151 ~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~--~~l~~L~~L~Ls~n~l~~~~~~-l~~l~~L~~ 227 (768)
T 3rgz_A 151 NSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDV--SRCVNLEFLDVSSNNFSTGIPF-LGDCSALQH 227 (768)
T ss_dssp TTCSEEECCSSCCEEETHHHHHHTTCCTTCCEEECCSSEEESCCBC--TTCTTCCEEECCSSCCCSCCCB-CTTCCSCCE
T ss_pred CCCCEEECCCCccCCcCChhhhhhccCCCCCEEECCCCcccccCCc--ccCCcCCEEECcCCcCCCCCcc-cccCCCCCE
Confidence 88888888888877666554 55555555555555555543332 4455555555555555554443 555555555
Q ss_pred eeccCccCCccCCccccCCCCCCeEEcccC----------------------ccccccchhccCC-CCCCEEeccCCcCc
Q 047332 212 MDLSQNQFSGSIPLSLGNLSNLGILYLYSN----------------------SFSGSIPSIIGNL-KSLLQLDLSENQLI 268 (614)
Q Consensus 212 L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~----------------------~~~~~~~~~l~~l-~~L~~L~L~~n~~~ 268 (614)
|++++|.+++..|..+..+++|++|++++| .+++.+|..+... ++|++|++++|.+.
T Consensus 228 L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~ 307 (768)
T 3rgz_A 228 LDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPLPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFY 307 (768)
T ss_dssp EECCSSCCCSCHHHHTTTCSSCCEEECCSSCCEESCCCCCCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEE
T ss_pred EECcCCcCCCcccHHHhcCCCCCEEECCCCcccCccCccccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCC
Confidence 555555555444445555555555555444 4444455444443 55666666666665
Q ss_pred cccCccccCCCCCCEEecCCCcccccCCcc-CCCCCCCCEeecCCCcccccCCccccCCC-CCCEEEccCCcccccCccc
Q 047332 269 GSIPLSFGNLSRLTLMSLFNNLLSGSLPPI-LGNLKSLSALGLHINQLSGVIPSSIGNLS-SLRALYLYNNGLCGFVPEE 346 (614)
Q Consensus 269 ~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~-l~~l~~L~~L~L~~n~l~~~~~~~l~~~~-~L~~L~l~~n~~~~~~~~~ 346 (614)
+..|..+..+++|++|++++|.+.+.+|.. +..+++|++|++++|.+++.+|..+..++ +|+.|++++|.+.+..|..
T Consensus 308 ~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~ 387 (768)
T 3rgz_A 308 GAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPN 387 (768)
T ss_dssp ECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTT
T ss_pred CccchHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChh
Confidence 555656666666666666666665555543 55666666666666666655665555554 6666666666666665555
Q ss_pred ccC--CCCCcEEEcccccCCccCCccccCCCCCCEEECcCCCCCCCCCccccCCCCCcEEEccCCcCCcccccccCCCCC
Q 047332 347 IRY--LKSLSELELCKNHLSGVIPHSIGNLTGLLLLNMCENHLSGPIPKSFKNLTSVERVLLNQNNLSGKVYEAFGDHPN 424 (614)
Q Consensus 347 ~~~--~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~ 424 (614)
+.. +++|++|++++|.+++.+|..+..+++|+.|++++|.+++.+|..+..+++|+.|++++|.+.+..+..+..+++
T Consensus 388 ~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~ 467 (768)
T 3rgz_A 388 LCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKT 467 (768)
T ss_dssp TTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTT
T ss_pred hhhcccCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCC
Confidence 554 677888888888888888888999999999999999999899999999999999999999999889999999999
Q ss_pred CCEEECcCcccccccCccccCCCCCcEEEcccCcccccCCccCCCCCCCCEEeCCCCcCccccchhccCCCCCCEeeccC
Q 047332 425 LTFLNLSQNNFCGEISFNWRNFPKLGTFIVSVNNISGSIPPEIGDSPKLQVLDLSSNSIVGEIPVQLGKLFSLNKLILNL 504 (614)
Q Consensus 425 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~ 504 (614)
|++|++++|.+.+.+|..+..+++|+.|++++|++++.+|.++..+++|++|++++|++.+.+|..+..+++|+.|++++
T Consensus 468 L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~ 547 (768)
T 3rgz_A 468 LETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNT 547 (768)
T ss_dssp CCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCS
T ss_pred ceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccccCccccc---------------------------------------------------------------------
Q 047332 505 NQLSGGMPLEL--------------------------------------------------------------------- 515 (614)
Q Consensus 505 n~~~~~~~~~~--------------------------------------------------------------------- 515 (614)
|.++|.+|..+
T Consensus 548 N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~ 627 (768)
T 3rgz_A 548 NLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPT 627 (768)
T ss_dssp SEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCS
T ss_pred CccCCcCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccceecccCchh
Confidence 99887666543
Q ss_pred -cCCCCCCEEeCCCCcCcccCCccccccCCCCEEeCCCCcCCcCCChhhhcCCCCCeeeCCCCCCCCCCCccccCCCCCC
Q 047332 516 -GSLTELQYLDLSANKLKSSIPKSIGNLLRLRYLDLSNNQFGHKIPIELEKLIHLSELDLSYNFLGEEIPFQICNVKSLE 594 (614)
Q Consensus 516 -~~l~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~sL~ 594 (614)
..+++|+.||+++|.+++.+|..++.+++|+.|++++|+++|.+|..++++++|++|||++|+++|.+|..+..+++|+
T Consensus 628 ~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~ 707 (768)
T 3rgz_A 628 FDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLT 707 (768)
T ss_dssp CSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCS
T ss_pred hhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCC
Confidence 3457899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEECcCCCCcccCCCCCC
Q 047332 595 KLNLCHNNLLGSFQQKKD 612 (614)
Q Consensus 595 ~L~l~~n~l~~~ip~~~~ 612 (614)
+|++++|+++|.||+.++
T Consensus 708 ~L~ls~N~l~g~iP~~~~ 725 (768)
T 3rgz_A 708 EIDLSNNNLSGPIPEMGQ 725 (768)
T ss_dssp EEECCSSEEEEECCSSSS
T ss_pred EEECcCCcccccCCCchh
Confidence 999999999999998764
No 2
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=9.9e-67 Score=581.06 Aligned_cols=537 Identities=32% Similarity=0.471 Sum_probs=453.2
Q ss_pred CCEEEEEcCCCCCCcccCc-ccccCCCCCcEEECCCCCCCccCcccc-cCCCCCCEEeCCCCCCCCCCCcC---C-----
Q 047332 62 GRVISINLSSMALNGTLQE-FAFSSFPHLVQLNLSFNIFFGIIPPQI-GNLSKLQYLDLGSNQLSGVIPPE---I----- 131 (614)
Q Consensus 62 ~~v~~l~l~~~~l~~~~~~-~~~~~l~~L~~L~Ls~~~~~~~~~~~l-~~l~~L~~L~Ls~n~l~~~~~~~---l----- 131 (614)
.++++|+|+++.+.|.++. ..++.+++|++|+|++|.+.+..|..+ .++++|++|++++|.+++..|.. +
T Consensus 100 ~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~ 179 (768)
T 3rgz_A 100 ASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGE 179 (768)
T ss_dssp TTCCEEECCSSEEEEEGGGGGGGGGCTTCCEEECCSSEEECCSSCCSCCCCTTCSEEECCSSCCEEETHHHHHHTTCCTT
T ss_pred CCCCEEECCCCcCCCcCCChHHHhCCCCCCEEECcCCccCCcCCHHHhccCCCCCEEECCCCccCCcCChhhhhhccCCC
Confidence 4677778887777766543 256677777777777776666555544 55666666666666555443332 2
Q ss_pred -----------------CCCCCCCEEEcccccCCCCCCccccCCCCCcEEEeccccCCCCCCcccCCCCCCcEEEeecCC
Q 047332 132 -----------------GHLNQLRILYFDVNQLHGSIPPEIGQLSLINVLALCHNNLYGSIPSSLGNLSNLANFYFNNNS 194 (614)
Q Consensus 132 -----------------~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~ 194 (614)
..+++|++|++++|.+.+.+|. ++++++|++|++++|.+++.+|..+..+++|++|++++|.
T Consensus 180 L~~L~Ls~n~l~~~~~~~~l~~L~~L~Ls~n~l~~~~~~-l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~ 258 (768)
T 3rgz_A 180 LKHLAISGNKISGDVDVSRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQ 258 (768)
T ss_dssp CCEEECCSSEEESCCBCTTCTTCCEEECCSSCCCSCCCB-CTTCCSCCEEECCSSCCCSCHHHHTTTCSSCCEEECCSSC
T ss_pred CCEEECCCCcccccCCcccCCcCCEEECcCCcCCCCCcc-cccCCCCCEEECcCCcCCCcccHHHhcCCCCCEEECCCCc
Confidence 5566777777777777666665 7777788888888887777777777788888888888887
Q ss_pred CcccCCccccCCCCCCeeeccCccCCccCCccccCC-CCCCeEEcccCccccccchhccCCCCCCEEeccCCcCccccCc
Q 047332 195 LFDSIPLVLGNLNSLSTMDLSQNQFSGSIPLSLGNL-SNLGILYLYSNSFSGSIPSIIGNLKSLLQLDLSENQLIGSIPL 273 (614)
Q Consensus 195 ~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l-~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~ 273 (614)
+.+.+|.. .+++|++|++++|.+++.+|..+... ++|++|++++|.+++.+|..++.+++|++|++++|.+.+.+|.
T Consensus 259 l~~~~~~~--~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~ 336 (768)
T 3rgz_A 259 FVGPIPPL--PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPM 336 (768)
T ss_dssp CEESCCCC--CCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCH
T ss_pred ccCccCcc--ccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCCccEEECCCCcccCcCCH
Confidence 77766643 67788888888888887888887765 8999999999999989999999999999999999999878886
Q ss_pred c-ccCCCCCCEEecCCCcccccCCccCCCCC-CCCEeecCCCcccccCCccccC--CCCCCEEEccCCcccccCcccccC
Q 047332 274 S-FGNLSRLTLMSLFNNLLSGSLPPILGNLK-SLSALGLHINQLSGVIPSSIGN--LSSLRALYLYNNGLCGFVPEEIRY 349 (614)
Q Consensus 274 ~-l~~l~~L~~L~L~~~~~~~~~~~~l~~l~-~L~~L~L~~n~l~~~~~~~l~~--~~~L~~L~l~~n~~~~~~~~~~~~ 349 (614)
. +..+++|++|++++|.+++.+|..+..++ +|++|++++|.+.+.++..+.. +++|+.|++++|.+.+.+|..+..
T Consensus 337 ~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~ 416 (768)
T 3rgz_A 337 DTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSN 416 (768)
T ss_dssp HHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGG
T ss_pred HHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHhc
Confidence 6 88999999999999999988888888877 8999999999998888877766 788999999999999889999999
Q ss_pred CCCCcEEEcccccCCccCCccccCCCCCCEEECcCCCCCCCCCccccCCCCCcEEEccCCcCCcccccccCCCCCCCEEE
Q 047332 350 LKSLSELELCKNHLSGVIPHSIGNLTGLLLLNMCENHLSGPIPKSFKNLTSVERVLLNQNNLSGKVYEAFGDHPNLTFLN 429 (614)
Q Consensus 350 ~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~ 429 (614)
+++|++|++++|.+++..|..+..+++|+.|++++|.+++.+|..+..+++|++|++++|++.+..+..+..+++|++|+
T Consensus 417 l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~ 496 (768)
T 3rgz_A 417 CSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWIS 496 (768)
T ss_dssp CTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEE
T ss_pred CCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEE
Confidence 99999999999999988899999999999999999999988999999999999999999999988888899999999999
Q ss_pred CcCcccccccCccccCCCCCcEEEcccCcccccCCccCCCCCCCCEEeCCCCcCccccchhc------------------
Q 047332 430 LSQNNFCGEISFNWRNFPKLGTFIVSVNNISGSIPPEIGDSPKLQVLDLSSNSIVGEIPVQL------------------ 491 (614)
Q Consensus 430 l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~------------------ 491 (614)
+++|++.+.+|..+..+++|+.|++++|++++.+|..+..+++|+.|++++|++.+.+|..+
T Consensus 497 L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~ 576 (768)
T 3rgz_A 497 LSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYV 576 (768)
T ss_dssp CCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEE
T ss_pred ccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhcccccccc
Confidence 99999998889889999999999999999999999999999999999999998877666433
Q ss_pred ----------------------------------------------------cCCCCCCEeeccCCccccCccccccCCC
Q 047332 492 ----------------------------------------------------GKLFSLNKLILNLNQLSGGMPLELGSLT 519 (614)
Q Consensus 492 ----------------------------------------------------~~~~~L~~L~l~~n~~~~~~~~~~~~l~ 519 (614)
..+++|+.|++++|.++|.+|..+..++
T Consensus 577 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~ 656 (768)
T 3rgz_A 577 YIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMP 656 (768)
T ss_dssp EEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCT
T ss_pred ccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhccccccEEECcCCcccccCCHHHhccc
Confidence 3457899999999999999999999999
Q ss_pred CCCEEeCCCCcCcccCCccccccCCCCEEeCCCCcCCcCCChhhhcCCCCCeeeCCCCCCCCCCCccccCCCCCCeEECc
Q 047332 520 ELQYLDLSANKLKSSIPKSIGNLLRLRYLDLSNNQFGHKIPIELEKLIHLSELDLSYNFLGEEIPFQICNVKSLEKLNLC 599 (614)
Q Consensus 520 ~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~sL~~L~l~ 599 (614)
.|+.|++++|.+++.+|..++.+++|++|+|++|+++|.+|..+.++++|++|++++|+++|.+|.. ..+.++....+.
T Consensus 657 ~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP~~-~~~~~~~~~~~~ 735 (768)
T 3rgz_A 657 YLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEM-GQFETFPPAKFL 735 (768)
T ss_dssp TCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEEEECCSS-SSGGGSCGGGGC
T ss_pred cCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCcccccCCCc-hhhccCCHHHhc
Confidence 9999999999999999999999999999999999999999999999999999999999999999975 456667777788
Q ss_pred CCC
Q 047332 600 HNN 602 (614)
Q Consensus 600 ~n~ 602 (614)
+|+
T Consensus 736 gN~ 738 (768)
T 3rgz_A 736 NNP 738 (768)
T ss_dssp SCT
T ss_pred CCc
Confidence 887
No 3
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=3.7e-60 Score=523.79 Aligned_cols=547 Identities=22% Similarity=0.233 Sum_probs=456.7
Q ss_pred CCEEEEEcCCCCCCcccCcccccCCCCCcEEECCCCCCCccCcccccCCCCCCEEeCCCCCCCCCCCcCCCCCCCCCEEE
Q 047332 62 GRVISINLSSMALNGTLQEFAFSSFPHLVQLNLSFNIFFGIIPPQIGNLSKLQYLDLGSNQLSGVIPPEIGHLNQLRILY 141 (614)
Q Consensus 62 ~~v~~l~l~~~~l~~~~~~~~~~~l~~L~~L~Ls~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ 141 (614)
.+++.|+++++.+.+..+. +|.++++|++|++++|.+++..|.+|+++++|++|++++|.+++..+..|+++++|++|+
T Consensus 25 ~~l~~L~Ls~n~l~~~~~~-~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~ 103 (680)
T 1ziw_A 25 TNITVLNLTHNQLRRLPAA-NFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELH 103 (680)
T ss_dssp TTCSEEECCSSCCCCCCGG-GGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEE
T ss_pred CCCcEEECCCCCCCCcCHH-HHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChhhhccCCCCCEEE
Confidence 4799999999999876555 899999999999999999999999999999999999999999966556799999999999
Q ss_pred cccccCCCCCCccccCCCCCcEEEeccccCCCCCCcccCCCCCCcEEEeecCCCcccCCcccc--CCCCCCeeeccCccC
Q 047332 142 FDVNQLHGSIPPEIGQLSLINVLALCHNNLYGSIPSSLGNLSNLANFYFNNNSLFDSIPLVLG--NLNSLSTMDLSQNQF 219 (614)
Q Consensus 142 l~~n~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~--~l~~L~~L~l~~~~~ 219 (614)
+++|.+.+..|..++++++|++|++++|.+++..+..+..+++|++|++++|.+.+..+..+. .+++|+.|++++|.+
T Consensus 104 L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l 183 (680)
T 1ziw_A 104 LMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQI 183 (680)
T ss_dssp CCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCCC
T ss_pred CCCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhccccccccEEECCCCcc
Confidence 999999877778899999999999999999998888899999999999999999887666543 568999999999999
Q ss_pred CccCCccccCC---------------------------CCCCeEEcccCccccccchhccCCCC--CCEEeccCCcCccc
Q 047332 220 SGSIPLSLGNL---------------------------SNLGILYLYSNSFSGSIPSIIGNLKS--LLQLDLSENQLIGS 270 (614)
Q Consensus 220 ~~~~~~~l~~l---------------------------~~L~~L~L~~~~~~~~~~~~l~~l~~--L~~L~L~~n~~~~~ 270 (614)
++..+..+..+ ++|++|++++|.+.+..|..+..++. |++|++++|.+.+.
T Consensus 184 ~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~ 263 (680)
T 1ziw_A 184 KEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVV 263 (680)
T ss_dssp CCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSCCCEE
T ss_pred cccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCCCEEECCCCCcCcc
Confidence 87777766654 45677777777777766777766644 88888888888877
Q ss_pred cCccccCCCCCCEEecCCCcccccCCccCCCCCCCCEeecCCCcccc-----cCC----ccccCCCCCCEEEccCCcccc
Q 047332 271 IPLSFGNLSRLTLMSLFNNLLSGSLPPILGNLKSLSALGLHINQLSG-----VIP----SSIGNLSSLRALYLYNNGLCG 341 (614)
Q Consensus 271 ~~~~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~-----~~~----~~l~~~~~L~~L~l~~n~~~~ 341 (614)
.+..+..+++|++|++++|.+.+..|..+..+++|++|+++++...+ .+| ..+..+++|+.|++++|.+.+
T Consensus 264 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~~ 343 (680)
T 1ziw_A 264 GNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPG 343 (680)
T ss_dssp CTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSCCBCC
T ss_pred CcccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcccccccccccChhhcccCCCCCEEECCCCccCC
Confidence 77778888888888888888887777788888888888887765432 122 256778888888888888888
Q ss_pred cCcccccCCCCCcEEEcccccCCcc--CCccccCC--CCCCEEECcCCCCCCCCCccccCCCCCcEEEccCCcCCcccc-
Q 047332 342 FVPEEIRYLKSLSELELCKNHLSGV--IPHSIGNL--TGLLLLNMCENHLSGPIPKSFKNLTSVERVLLNQNNLSGKVY- 416 (614)
Q Consensus 342 ~~~~~~~~~~~L~~L~l~~n~~~~~--~~~~~~~l--~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~- 416 (614)
..+..+..+++|++|++++|.+... ....+..+ ++|+.|++++|.+++..+..|..+++|+.|++++|.+.+..+
T Consensus 344 ~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~ 423 (680)
T 1ziw_A 344 IKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTG 423 (680)
T ss_dssp CCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCS
T ss_pred CChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCccccCc
Confidence 7777788888888888888865422 22233332 578888888888888888888899999999999999876554
Q ss_pred cccCCCCCCCEEECcCcccccccCccccCCCCCcEEEcccCccc--ccCCccCCCCCCCCEEeCCCCcCccccchhccCC
Q 047332 417 EAFGDHPNLTFLNLSQNNFCGEISFNWRNFPKLGTFIVSVNNIS--GSIPPEIGDSPKLQVLDLSSNSIVGEIPVQLGKL 494 (614)
Q Consensus 417 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~--~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~ 494 (614)
..+.++++|++|++++|.+.+..+..+..+++|+.|++++|.+. +.+|..+..+++|+.|++++|.+++..+..+..+
T Consensus 424 ~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l 503 (680)
T 1ziw_A 424 QEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGL 503 (680)
T ss_dssp GGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSSCCCCCCTTTTTTC
T ss_pred ccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccccCCCCCEEECCCCCCCcCChhhhccc
Confidence 67888999999999999988887888888999999999999876 5678888899999999999999987777778899
Q ss_pred CCCCEeeccCCccccCcc--------ccccCCCCCCEEeCCCCcCcccCCccccccCCCCEEeCCCCcCCcCCChhhhcC
Q 047332 495 FSLNKLILNLNQLSGGMP--------LELGSLTELQYLDLSANKLKSSIPKSIGNLLRLRYLDLSNNQFGHKIPIELEKL 566 (614)
Q Consensus 495 ~~L~~L~l~~n~~~~~~~--------~~~~~l~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~l~~l 566 (614)
++|++|++++|.+++..+ ..+.++++|+.|++++|.+....+..|..+++|+.|++++|++++..+..|.++
T Consensus 504 ~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l 583 (680)
T 1ziw_A 504 EKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQ 583 (680)
T ss_dssp TTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTC
T ss_pred cccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCCCCCHHHcccccCcceeECCCCCCCcCCHhHhCCC
Confidence 999999999998875422 237888999999999999985545578999999999999999987777778899
Q ss_pred CCCCeeeCCCCCCCCCCCcccc-CCCCCCeEECcCCCCcccCCC
Q 047332 567 IHLSELDLSYNFLGEEIPFQIC-NVKSLEKLNLCHNNLLGSFQQ 609 (614)
Q Consensus 567 ~~L~~L~L~~n~~~~~~p~~l~-~l~sL~~L~l~~n~l~~~ip~ 609 (614)
++|++|++++|++.+..|..+. .+++|++|++++|++....+.
T Consensus 584 ~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~l~l~~N~~~c~c~~ 627 (680)
T 1ziw_A 584 VSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCES 627 (680)
T ss_dssp TTCCEEECTTSCCCBCCHHHHHHHHTTCSEEECTTCCCCBCCCC
T ss_pred CCCCEEECCCCcCCccChhHhcccccccCEEEccCCCcccCCcc
Confidence 9999999999999988887776 688999999999999887663
No 4
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=6.2e-58 Score=505.99 Aligned_cols=538 Identities=23% Similarity=0.240 Sum_probs=465.5
Q ss_pred EEcCCCCCCcccCcccccCCCCCcEEECCCCCCCccCcccccCCCCCCEEeCCCCCCCCCCCcCCCCCCCCCEEEccccc
Q 047332 67 INLSSMALNGTLQEFAFSSFPHLVQLNLSFNIFFGIIPPQIGNLSKLQYLDLGSNQLSGVIPPEIGHLNQLRILYFDVNQ 146 (614)
Q Consensus 67 l~l~~~~l~~~~~~~~~~~l~~L~~L~Ls~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~l~~n~ 146 (614)
+++++.+++. +|. .+. +++++|++++|.+++..+..|.++++|++|++++|.+++..|..|+++++|++|++++|.
T Consensus 9 ~~cs~~~L~~-ip~-~~~--~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~ 84 (680)
T 1ziw_A 9 ADCSHLKLTQ-VPD-DLP--TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNE 84 (680)
T ss_dssp EECCSSCCSS-CCS-CSC--TTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSC
T ss_pred eECCCCCccc-ccc-ccC--CCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCc
Confidence 5555555543 343 332 789999999999999888889999999999999999998889999999999999999999
Q ss_pred CCCCCCccccCCCCCcEEEeccccCCCCCCcccCCCCCCcEEEeecCCCcccCCccccCCCCCCeeeccCccCCccCCcc
Q 047332 147 LHGSIPPEIGQLSLINVLALCHNNLYGSIPSSLGNLSNLANFYFNNNSLFDSIPLVLGNLNSLSTMDLSQNQFSGSIPLS 226 (614)
Q Consensus 147 ~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~ 226 (614)
+++..+..|+++++|++|++++|.+++..|..++.+++|++|++++|.+.+..+..++++++|++|++++|.+++..+..
T Consensus 85 l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~ 164 (680)
T 1ziw_A 85 LSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEE 164 (680)
T ss_dssp CCCCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHH
T ss_pred cCccChhhhccCCCCCEEECCCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHH
Confidence 98555557999999999999999999887788999999999999999999988888999999999999999998776665
Q ss_pred cc--CCCCCCeEEcccCccccccchhccCC---------------------------CCCCEEeccCCcCccccCccccC
Q 047332 227 LG--NLSNLGILYLYSNSFSGSIPSIIGNL---------------------------KSLLQLDLSENQLIGSIPLSFGN 277 (614)
Q Consensus 227 l~--~l~~L~~L~L~~~~~~~~~~~~l~~l---------------------------~~L~~L~L~~n~~~~~~~~~l~~ 277 (614)
+. .+++|++|++++|.+++..|..+..+ ++|+.|++++|.+.+..|..+..
T Consensus 165 ~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~ 244 (680)
T 1ziw_A 165 LDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLG 244 (680)
T ss_dssp HGGGTTCEESEEECTTCCCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGG
T ss_pred hhccccccccEEECCCCcccccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhc
Confidence 54 56899999999999987777655543 56788888888888888888887
Q ss_pred CCC--CCEEecCCCcccccCCccCCCCCCCCEeecCCCcccccCCccccCCCCCCEEEccCCcccc-----cCc----cc
Q 047332 278 LSR--LTLMSLFNNLLSGSLPPILGNLKSLSALGLHINQLSGVIPSSIGNLSSLRALYLYNNGLCG-----FVP----EE 346 (614)
Q Consensus 278 l~~--L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~~~~-----~~~----~~ 346 (614)
++. |++|++++|.+.+..+..+..+++|++|++++|.+.+..+..+..+++|+.|++++|...+ .+| ..
T Consensus 245 l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~ 324 (680)
T 1ziw_A 245 LKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFS 324 (680)
T ss_dssp GGGSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTT
T ss_pred cCcCCCCEEECCCCCcCccCcccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcccccccccccChhh
Confidence 754 9999999999998888889999999999999999998888889999999999998875443 122 26
Q ss_pred ccCCCCCcEEEcccccCCccCCccccCCCCCCEEECcCCCCCCC--CCccccC--CCCCcEEEccCCcCCcccccccCCC
Q 047332 347 IRYLKSLSELELCKNHLSGVIPHSIGNLTGLLLLNMCENHLSGP--IPKSFKN--LTSVERVLLNQNNLSGKVYEAFGDH 422 (614)
Q Consensus 347 ~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~ls~n~l~~~--~~~~~~~--~~~L~~L~l~~n~~~~~~~~~~~~~ 422 (614)
+..+++|++|++++|.+++..+..|..+++|++|++++|.+... ....|.. .++|+.|++++|++.+..+..+..+
T Consensus 325 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l 404 (680)
T 1ziw_A 325 FQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWL 404 (680)
T ss_dssp TTTCTTCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTC
T ss_pred cccCCCCCEEECCCCccCCCChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCC
Confidence 77889999999999999988888899999999999999875432 2223333 3589999999999998888999999
Q ss_pred CCCCEEECcCcccccccC-ccccCCCCCcEEEcccCcccccCCccCCCCCCCCEEeCCCCcCc--cccchhccCCCCCCE
Q 047332 423 PNLTFLNLSQNNFCGEIS-FNWRNFPKLGTFIVSVNNISGSIPPEIGDSPKLQVLDLSSNSIV--GEIPVQLGKLFSLNK 499 (614)
Q Consensus 423 ~~L~~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~--~~~~~~~~~~~~L~~ 499 (614)
++|+.|++++|.+.+.++ ..+.++++|+.|++++|++++..+..+..+++|+.|++++|.+. +..|..+..+++|+.
T Consensus 405 ~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~ 484 (680)
T 1ziw_A 405 GHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTI 484 (680)
T ss_dssp TTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCE
T ss_pred CCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccccCCCCCE
Confidence 999999999999987665 67889999999999999999888888999999999999999986 567888999999999
Q ss_pred eeccCCccccCccccccCCCCCCEEeCCCCcCcccCC--------ccccccCCCCEEeCCCCcCCcCCChhhhcCCCCCe
Q 047332 500 LILNLNQLSGGMPLELGSLTELQYLDLSANKLKSSIP--------KSIGNLLRLRYLDLSNNQFGHKIPIELEKLIHLSE 571 (614)
Q Consensus 500 L~l~~n~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~--------~~l~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~ 571 (614)
|++++|.+++..+..|.++++|++|++++|.+.+..+ ..+..+++|++|++++|+++...+..|.++++|++
T Consensus 485 L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~ 564 (680)
T 1ziw_A 485 LDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKI 564 (680)
T ss_dssp EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred EECCCCCCCcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCCCCCHHHcccccCcce
Confidence 9999999998888889999999999999999986422 24788999999999999998655567999999999
Q ss_pred eeCCCCCCCCCCCccccCCCCCCeEECcCCCCcccCC
Q 047332 572 LDLSYNFLGEEIPFQICNVKSLEKLNLCHNNLLGSFQ 608 (614)
Q Consensus 572 L~L~~n~~~~~~p~~l~~l~sL~~L~l~~n~l~~~ip 608 (614)
|++++|++.+..+..|..+++|+.|++++|.+++..|
T Consensus 565 L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~ 601 (680)
T 1ziw_A 565 IDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEK 601 (680)
T ss_dssp EECCSSCCCCCCTTTTTTCTTCCEEECTTSCCCBCCH
T ss_pred eECCCCCCCcCCHhHhCCCCCCCEEECCCCcCCccCh
Confidence 9999999998888888999999999999999987654
No 5
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=5.3e-58 Score=499.86 Aligned_cols=516 Identities=20% Similarity=0.203 Sum_probs=423.7
Q ss_pred CCCcEEECCCCCCCccCcccccCCCCCCEEeCCCCCCCCCCCcCCCCCCCCCEEEcccccCCCCCCccccCCCCCcEEEe
Q 047332 87 PHLVQLNLSFNIFFGIIPPQIGNLSKLQYLDLGSNQLSGVIPPEIGHLNQLRILYFDVNQLHGSIPPEIGQLSLINVLAL 166 (614)
Q Consensus 87 ~~L~~L~Ls~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l 166 (614)
+++++|++++|.+++..|.+|.++++|++|++++|.+.+..|.+|+++++|++|++++|.+.+..|..++++++|++|++
T Consensus 33 ~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 112 (606)
T 3t6q_A 33 NSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFF 112 (606)
T ss_dssp TTCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEEC
T ss_pred CcCcEEEccCCccCcCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhhhcccccccEeec
Confidence 36889999999888888888889999999999999888888888888999999999999888777888888999999999
Q ss_pred ccccCCCCCCcccCCCCCCcEEEeecCCCcccCCccccCCCCCCeeeccCccCCccCCccccCCCCCC--eEEcccCccc
Q 047332 167 CHNNLYGSIPSSLGNLSNLANFYFNNNSLFDSIPLVLGNLNSLSTMDLSQNQFSGSIPLSLGNLSNLG--ILYLYSNSFS 244 (614)
Q Consensus 167 ~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~--~L~L~~~~~~ 244 (614)
++|.+++..+..+..+++|++|++++|.+.+.....+..+++|++|++++|.+++..+..+..+++|+ +|++++|.+.
T Consensus 113 ~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l~~n~l~ 192 (606)
T 3t6q_A 113 IQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIA 192 (606)
T ss_dssp TTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHHTTTTCCSEEEECTTCCCC
T ss_pred cccCcccCCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEcccCcccccChhhhhhhcccceeEEecCCCccC
Confidence 99888876677788888999999998888774434455588899999998888877777888888888 8888888888
Q ss_pred cccchhccCCCCCCEEeccCCcCccccCccccCCCCCCEEecCCCccc-----ccCCccCCCCC--CCCEeecCCCcccc
Q 047332 245 GSIPSIIGNLKSLLQLDLSENQLIGSIPLSFGNLSRLTLMSLFNNLLS-----GSLPPILGNLK--SLSALGLHINQLSG 317 (614)
Q Consensus 245 ~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~~~~~-----~~~~~~l~~l~--~L~~L~L~~n~l~~ 317 (614)
+..|..+. ...|++|++++|.. .+..+..+..++...+.-..+. ...+..+..+. +|+.+++++|.+++
T Consensus 193 ~~~~~~~~-~~~L~~L~l~~~~~---~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~~ 268 (606)
T 3t6q_A 193 GIEPGAFD-SAVFQSLNFGGTQN---LLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFN 268 (606)
T ss_dssp EECTTTTT-TCEEEEEECTTCSC---HHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCCSS
T ss_pred ccChhHhh-hccccccccCCchh---HHHHhhhccccchhheechhhccccccccChhHhchhhcCceeEEEeecCccCc
Confidence 76666554 46788888888762 2333333443333222221111 11112222222 68889999999887
Q ss_pred cCCccccCCCCCCEEEccCCcccccCcccccCCCCCcEEEcccccCCccCCccccCCCCCCEEECcCCCCCCCCCc-ccc
Q 047332 318 VIPSSIGNLSSLRALYLYNNGLCGFVPEEIRYLKSLSELELCKNHLSGVIPHSIGNLTGLLLLNMCENHLSGPIPK-SFK 396 (614)
Q Consensus 318 ~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~-~~~ 396 (614)
..+..+..+++|+.|++++|.+. .+|..+..+++|++|++++|.+++..|..+..+++|++|++++|.+.+.++. .+.
T Consensus 269 ~~~~~~~~l~~L~~L~l~~n~l~-~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~ 347 (606)
T 3t6q_A 269 ISSNTFHCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLE 347 (606)
T ss_dssp CCTTTTTTCTTCSEEECTTSCCS-CCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTT
T ss_pred cCHHHhccccCCCEEeccCCccC-CCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhh
Confidence 77777888899999999999888 4677788889999999999998877788888899999999999988765544 588
Q ss_pred CCCCCcEEEccCCcCCccc--ccccCCCCCCCEEECcCcccccccCccccCCCCCcEEEcccCcccccCCc-cCCCCCCC
Q 047332 397 NLTSVERVLLNQNNLSGKV--YEAFGDHPNLTFLNLSQNNFCGEISFNWRNFPKLGTFIVSVNNISGSIPP-EIGDSPKL 473 (614)
Q Consensus 397 ~~~~L~~L~l~~n~~~~~~--~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~~~~~~~L 473 (614)
.+++|++|++++|.+.+.. +..+..+++|++|++++|.+.+..+..+..+++|+.|++++|.+.+..+. .+..+++|
T Consensus 348 ~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L 427 (606)
T 3t6q_A 348 NLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLL 427 (606)
T ss_dssp TCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTC
T ss_pred ccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccC
Confidence 8999999999999988766 66788899999999999999888888888999999999999999877654 47889999
Q ss_pred CEEeCCCCcCccccchhccCCCCCCEeeccCCccccC---ccccccCCCCCCEEeCCCCcCcccCCccccccCCCCEEeC
Q 047332 474 QVLDLSSNSIVGEIPVQLGKLFSLNKLILNLNQLSGG---MPLELGSLTELQYLDLSANKLKSSIPKSIGNLLRLRYLDL 550 (614)
Q Consensus 474 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~---~~~~~~~l~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~l 550 (614)
++|++++|.+.+..|..+..+++|++|++++|.+.+. .+..+..+++|++|++++|.+.+..|..|..+++|+.|++
T Consensus 428 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 507 (606)
T 3t6q_A 428 KVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDL 507 (606)
T ss_dssp CEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEC
T ss_pred CEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccChhhhccccCCCEEEC
Confidence 9999999999888888899999999999999998863 3356889999999999999999888999999999999999
Q ss_pred CCCcCCcCCChhhhcCCCCCeeeCCCCCCCCCCCccccCCCCCCeEECcCCCCcccCC
Q 047332 551 SNNQFGHKIPIELEKLIHLSELDLSYNFLGEEIPFQICNVKSLEKLNLCHNNLLGSFQ 608 (614)
Q Consensus 551 ~~n~~~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~sL~~L~l~~n~l~~~ip 608 (614)
++|++++..|..+.+++.| +|++++|++.+.+|..+..+++|++|++++|++.+..+
T Consensus 508 s~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~ 564 (606)
T 3t6q_A 508 SHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQNPLDCTCS 564 (606)
T ss_dssp CSSCCCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSEEECTTCCEECSGG
T ss_pred CCCccCcCChhHhCccccc-EEECcCCcccccCHhhcccCCCCCEEeCCCCCccccCC
Confidence 9999999999999999999 99999999999888888889999999999999988765
No 6
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=8.2e-56 Score=482.59 Aligned_cols=516 Identities=21% Similarity=0.211 Sum_probs=440.0
Q ss_pred CCEEEEEcCCCCCCcccCcccccCCCCCcEEECCCCCCCccCcccccCCCCCCEEeCCCCCCCCCCCcCCCCCCCCCEEE
Q 047332 62 GRVISINLSSMALNGTLQEFAFSSFPHLVQLNLSFNIFFGIIPPQIGNLSKLQYLDLGSNQLSGVIPPEIGHLNQLRILY 141 (614)
Q Consensus 62 ~~v~~l~l~~~~l~~~~~~~~~~~l~~L~~L~Ls~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ 141 (614)
..++.++++++.+++..+. +|.++++|++|+|++|.+.+..|.+|.++++|++|++++|.+++..|..|+.+++|++|+
T Consensus 33 ~~l~~L~Ls~n~i~~~~~~-~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 111 (606)
T 3t6q_A 33 NSTECLEFSFNVLPTIQNT-TFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLF 111 (606)
T ss_dssp TTCCEEECTTCCCSEECTT-TSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEE
T ss_pred CcCcEEEccCCccCcCChh-HhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhhhcccccccEee
Confidence 3789999999999877666 899999999999999999999999999999999999999999988899999999999999
Q ss_pred cccccCCCCCCccccCCCCCcEEEeccccCCCCCCcccCCCCCCcEEEeecCCCcccCCccccCCCCCC--eeeccCccC
Q 047332 142 FDVNQLHGSIPPEIGQLSLINVLALCHNNLYGSIPSSLGNLSNLANFYFNNNSLFDSIPLVLGNLNSLS--TMDLSQNQF 219 (614)
Q Consensus 142 l~~n~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~--~L~l~~~~~ 219 (614)
+++|.+++..+..+.++++|++|++++|.+++..+..+..+++|++|++++|.+.+..+..++.+++|+ .|++++|.+
T Consensus 112 L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l~~n~l 191 (606)
T 3t6q_A 112 FIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDI 191 (606)
T ss_dssp CTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHHTTTTCCSEEEECTTCCC
T ss_pred ccccCcccCCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEcccCcccccChhhhhhhcccceeEEecCCCcc
Confidence 999999976678899999999999999999975434455599999999999999988888899999999 899999999
Q ss_pred CccCCccccCCCCCCeEEcccCccccccchhccCCCCCCEEeccCCcCc-----cccCccccCCC--CCCEEecCCCccc
Q 047332 220 SGSIPLSLGNLSNLGILYLYSNSFSGSIPSIIGNLKSLLQLDLSENQLI-----GSIPLSFGNLS--RLTLMSLFNNLLS 292 (614)
Q Consensus 220 ~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~n~~~-----~~~~~~l~~l~--~L~~L~L~~~~~~ 292 (614)
.+..+..+.. .+|++|++++|. .++..+..+..++...+....+. ...+..+..+. +|+.|++++|.++
T Consensus 192 ~~~~~~~~~~-~~L~~L~l~~~~---~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~ 267 (606)
T 3t6q_A 192 AGIEPGAFDS-AVFQSLNFGGTQ---NLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFF 267 (606)
T ss_dssp CEECTTTTTT-CEEEEEECTTCS---CHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCCS
T ss_pred CccChhHhhh-ccccccccCCch---hHHHHhhhccccchhheechhhccccccccChhHhchhhcCceeEEEeecCccC
Confidence 9777666554 689999999986 23344444444443333222111 11122233332 7889999999998
Q ss_pred ccCCccCCCCCCCCEeecCCCcccccCCccccCCCCCCEEEccCCcccccCcccccCCCCCcEEEcccccCCccCCc-cc
Q 047332 293 GSLPPILGNLKSLSALGLHINQLSGVIPSSIGNLSSLRALYLYNNGLCGFVPEEIRYLKSLSELELCKNHLSGVIPH-SI 371 (614)
Q Consensus 293 ~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~-~~ 371 (614)
+..+..+..+++|++|++++|.++ .+|..+..+++|++|++++|.+.+..|..+..+++|++|++++|.+.+.++. .+
T Consensus 268 ~~~~~~~~~l~~L~~L~l~~n~l~-~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~ 346 (606)
T 3t6q_A 268 NISSNTFHCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCL 346 (606)
T ss_dssp SCCTTTTTTCTTCSEEECTTSCCS-CCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTT
T ss_pred ccCHHHhccccCCCEEeccCCccC-CCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhh
Confidence 887778899999999999999988 6778888999999999999999988888888999999999999988866554 48
Q ss_pred cCCCCCCEEECcCCCCCCCC--CccccCCCCCcEEEccCCcCCcccccccCCCCCCCEEECcCcccccccCc-cccCCCC
Q 047332 372 GNLTGLLLLNMCENHLSGPI--PKSFKNLTSVERVLLNQNNLSGKVYEAFGDHPNLTFLNLSQNNFCGEISF-NWRNFPK 448 (614)
Q Consensus 372 ~~l~~L~~L~ls~n~l~~~~--~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~~~~~~~ 448 (614)
..+++|++|++++|.+++.. +..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+.+..+. .+..+++
T Consensus 347 ~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~ 426 (606)
T 3t6q_A 347 ENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHL 426 (606)
T ss_dssp TTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTT
T ss_pred hccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCccc
Confidence 88999999999999988665 67788999999999999999888888899999999999999998876554 4788999
Q ss_pred CcEEEcccCcccccCCccCCCCCCCCEEeCCCCcCcccc---chhccCCCCCCEeeccCCccccCccccccCCCCCCEEe
Q 047332 449 LGTFIVSVNNISGSIPPEIGDSPKLQVLDLSSNSIVGEI---PVQLGKLFSLNKLILNLNQLSGGMPLELGSLTELQYLD 525 (614)
Q Consensus 449 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~---~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~ 525 (614)
|+.|++++|.+.+..+..+..+++|++|++++|.+.+.. +..+..+++|++|++++|.+++..|..|..+++|++|+
T Consensus 427 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 506 (606)
T 3t6q_A 427 LKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVD 506 (606)
T ss_dssp CCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEE
T ss_pred CCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccChhhhccccCCCEEE
Confidence 999999999998888888889999999999999987632 35688899999999999999988888999999999999
Q ss_pred CCCCcCcccCCccccccCCCCEEeCCCCcCCcCCChhhhcCCCCCeeeCCCCCCCCCCC
Q 047332 526 LSANKLKSSIPKSIGNLLRLRYLDLSNNQFGHKIPIELEKLIHLSELDLSYNFLGEEIP 584 (614)
Q Consensus 526 ls~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~L~~n~~~~~~p 584 (614)
+++|.+++..|+.+..+++| .|++++|++++..|..+..+++|+.|++++|++....+
T Consensus 507 Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~ 564 (606)
T 3t6q_A 507 LSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQNPLDCTCS 564 (606)
T ss_dssp CCSSCCCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSEEECTTCCEECSGG
T ss_pred CCCCccCcCChhHhCccccc-EEECcCCcccccCHhhcccCCCCCEEeCCCCCccccCC
Confidence 99999999999999999999 99999999998888889999999999999998876543
No 7
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=1.8e-55 Score=479.84 Aligned_cols=528 Identities=21% Similarity=0.192 Sum_probs=415.7
Q ss_pred EEEcCCCCCCcccCcccccCCCCCcEEECCCCCCCccCcccccCCCCCCEEeCCCCCCCCCCCcCCCCCCCCCEEEcccc
Q 047332 66 SINLSSMALNGTLQEFAFSSFPHLVQLNLSFNIFFGIIPPQIGNLSKLQYLDLGSNQLSGVIPPEIGHLNQLRILYFDVN 145 (614)
Q Consensus 66 ~l~l~~~~l~~~~~~~~~~~l~~L~~L~Ls~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~l~~n 145 (614)
.+++++.+++. +|. .+ .+++++|++++|.+++..+.+|.++++|++|++++|.+++..|.+|+++++|++|++++|
T Consensus 15 ~~~c~~~~l~~-ip~-~~--~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n 90 (606)
T 3vq2_A 15 TYQCMDQKLSK-VPD-DI--PSSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGN 90 (606)
T ss_dssp EEECTTSCCSS-CCT-TS--CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTC
T ss_pred ceEccCCCccc-CCC-CC--CCCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCC
Confidence 34555555543 232 22 267888888888888777778888888888888888888777778888888888888888
Q ss_pred cCCCCCCccccCCCCCcEEEeccccCCCCCCcccCCCCCCcEEEeecCCCcc-cCCccccCCCCCCeeeccCccCCccCC
Q 047332 146 QLHGSIPPEIGQLSLINVLALCHNNLYGSIPSSLGNLSNLANFYFNNNSLFD-SIPLVLGNLNSLSTMDLSQNQFSGSIP 224 (614)
Q Consensus 146 ~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~-~~~~~l~~l~~L~~L~l~~~~~~~~~~ 224 (614)
.+++..|..|+++++|++|++++|.+++..+..++.+++|++|++++|.+.+ .+|..++++++|++|++++|.+++..+
T Consensus 91 ~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~ 170 (606)
T 3vq2_A 91 PIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITV 170 (606)
T ss_dssp CCCCCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECT
T ss_pred cccccChhhcCCcccCCEEEccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceecCh
Confidence 8887777888888888888888888877666778888888888888888775 467778888888888888888887767
Q ss_pred ccccCCCCCC----eEEcccCccccccchhccCCCCCCEEeccCCcCc-cccCccccCCCCCCEEecCCCcccc------
Q 047332 225 LSLGNLSNLG----ILYLYSNSFSGSIPSIIGNLKSLLQLDLSENQLI-GSIPLSFGNLSRLTLMSLFNNLLSG------ 293 (614)
Q Consensus 225 ~~l~~l~~L~----~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~n~~~-~~~~~~l~~l~~L~~L~L~~~~~~~------ 293 (614)
..+..+++|+ +|++++|.+++..+..+.. .+|++|++++|.+. +..|..+..++.|+.+++..+.+.+
T Consensus 171 ~~~~~l~~L~~~l~~L~l~~n~l~~~~~~~~~~-~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~ 249 (606)
T 3vq2_A 171 NDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQG-IKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEI 249 (606)
T ss_dssp TTTHHHHHCTTCCCEEECTTCCCCEECTTTTTT-CEEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSC
T ss_pred hhhhhhhccccccceeeccCCCcceeCcccccC-ceeeeeeccCCccchhHHHHHhccccccccccccccccccCCcccc
Confidence 6666655544 7888888887544444433 47888888888775 3556667778888877765443321
Q ss_pred cCCccCCCCC--CCCEeec-CCCcccccCCccccCCCCCCEEEccCCcccccCcccccCCCCCcEEEcccccCCccCCcc
Q 047332 294 SLPPILGNLK--SLSALGL-HINQLSGVIPSSIGNLSSLRALYLYNNGLCGFVPEEIRYLKSLSELELCKNHLSGVIPHS 370 (614)
Q Consensus 294 ~~~~~l~~l~--~L~~L~L-~~n~l~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~ 370 (614)
..+..+..+. .++.+++ ..+.+.+..+. +..+++|+.|++++|.+.. +| .+..+++|++|++++|.+ +.+| .
T Consensus 250 ~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~-~~~l~~L~~L~l~~~~~~~-l~-~l~~~~~L~~L~l~~n~l-~~lp-~ 324 (606)
T 3vq2_A 250 FEPSIMEGLCDVTIDEFRLTYTNDFSDDIVK-FHCLANVSAMSLAGVSIKY-LE-DVPKHFKWQSLSIIRCQL-KQFP-T 324 (606)
T ss_dssp CCGGGGTTGGGSEEEEEEECCCTTCCGGGGS-CGGGTTCSEEEEESCCCCC-CC-CCCTTCCCSEEEEESCCC-SSCC-C
T ss_pred cChHHhhhhhhccHhheeccccccccccccc-cccCCCCCEEEecCccchh-hh-hccccccCCEEEcccccC-cccc-c
Confidence 1111222222 3555666 66677777666 8888999999999998865 44 678888999999999998 4667 4
Q ss_pred ccCCCCCCEEECcCCCCCCCCCccccCCCCCcEEEccCCcCCccc--ccccCCCCCCCEEECcCcccccccCccccCCCC
Q 047332 371 IGNLTGLLLLNMCENHLSGPIPKSFKNLTSVERVLLNQNNLSGKV--YEAFGDHPNLTFLNLSQNNFCGEISFNWRNFPK 448 (614)
Q Consensus 371 ~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~--~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 448 (614)
+ .+++|+.|++++|...+.. .+..+++|+.|++++|.+++.. +..+..+++|++|++++|.+.+ ++..+..+++
T Consensus 325 ~-~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~-~~~~~~~l~~ 400 (606)
T 3vq2_A 325 L-DLPFLKSLTLTMNKGSISF--KKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAII-MSANFMGLEE 400 (606)
T ss_dssp C-CCSSCCEEEEESCSSCEEC--CCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEE-ECCCCTTCTT
T ss_pred C-CCCccceeeccCCcCccch--hhccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCcccc-chhhccCCCC
Confidence 5 8889999999998654433 5678899999999999887653 6777889999999999999875 4577888999
Q ss_pred CcEEEcccCcccccCC-ccCCCCCCCCEEeCCCCcCccccchhccCCCCCCEeeccCCcccc-CccccccCCCCCCEEeC
Q 047332 449 LGTFIVSVNNISGSIP-PEIGDSPKLQVLDLSSNSIVGEIPVQLGKLFSLNKLILNLNQLSG-GMPLELGSLTELQYLDL 526 (614)
Q Consensus 449 L~~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~-~~~~~~~~l~~L~~L~l 526 (614)
|+.|++++|++.+..+ ..+..+++|++|++++|.+.+..|..+..+++|++|++++|.+.+ ..|..+..+++|++|++
T Consensus 401 L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~L 480 (606)
T 3vq2_A 401 LQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDL 480 (606)
T ss_dssp CCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEEC
T ss_pred CCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEEC
Confidence 9999999999988777 678889999999999999998888889999999999999999987 37888899999999999
Q ss_pred CCCcCcccCCccccccCCCCEEeCCCCcCCcCCChhhhcCCCCCeeeCCCCCCCCCCCccccCCC-CCCeEECcCCCCcc
Q 047332 527 SANKLKSSIPKSIGNLLRLRYLDLSNNQFGHKIPIELEKLIHLSELDLSYNFLGEEIPFQICNVK-SLEKLNLCHNNLLG 605 (614)
Q Consensus 527 s~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~-sL~~L~l~~n~l~~ 605 (614)
++|.+++..|..+..+++|++|++++|++++.+|..+.++++|++|++++|++. .+|..+..++ +|++|++++|++.+
T Consensus 481 s~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~p~~~~~l~~~L~~l~l~~N~~~c 559 (606)
T 3vq2_A 481 SKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIE-TSKGILQHFPKSLAFFNLTNNSVAC 559 (606)
T ss_dssp TTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCC-CEESCGGGSCTTCCEEECCSCCCCC
T ss_pred CCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCc-ccCHhHhhhcccCcEEEccCCCccc
Confidence 999999888889999999999999999999888999999999999999999987 4666678876 69999999999988
Q ss_pred cCC
Q 047332 606 SFQ 608 (614)
Q Consensus 606 ~ip 608 (614)
..|
T Consensus 560 ~c~ 562 (606)
T 3vq2_A 560 ICE 562 (606)
T ss_dssp SST
T ss_pred CCc
Confidence 765
No 8
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=2e-54 Score=471.66 Aligned_cols=511 Identities=22% Similarity=0.160 Sum_probs=429.8
Q ss_pred CCEEEEEcCCCCCCcccCcccccCCCCCcEEECCCCCCCccCcccccCCCCCCEEeCCCCCCCCCCCcCCCCCCCCCEEE
Q 047332 62 GRVISINLSSMALNGTLQEFAFSSFPHLVQLNLSFNIFFGIIPPQIGNLSKLQYLDLGSNQLSGVIPPEIGHLNQLRILY 141 (614)
Q Consensus 62 ~~v~~l~l~~~~l~~~~~~~~~~~l~~L~~L~Ls~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ 141 (614)
.+++.|+++++.+.+..+. +|.++++|++|++++|.+++..|.+|.++++|++|++++|.+++..|..|+++++|++|+
T Consensus 32 ~~l~~L~Ls~n~l~~~~~~-~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ 110 (606)
T 3vq2_A 32 SSTKNIDLSFNPLKILKSY-SFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLV 110 (606)
T ss_dssp TTCCEEECTTSCCCEECTT-TTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEE
T ss_pred CCcCEEECCCCCcCEeChh-hccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhhcCCcccCCEEE
Confidence 4799999999999887666 899999999999999999998899999999999999999999988899999999999999
Q ss_pred cccccCCCCCCccccCCCCCcEEEeccccCCC-CCCcccCCCCCCcEEEeecCCCcccCCccccCCCCCC----eeeccC
Q 047332 142 FDVNQLHGSIPPEIGQLSLINVLALCHNNLYG-SIPSSLGNLSNLANFYFNNNSLFDSIPLVLGNLNSLS----TMDLSQ 216 (614)
Q Consensus 142 l~~n~~~~~~~~~~~~l~~L~~L~l~~~~l~~-~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~----~L~l~~ 216 (614)
+++|.+.+..+..++++++|++|++++|.+++ .+|..++++++|++|++++|.+.+..+..++.+++|+ +|++++
T Consensus 111 L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~~l~~L~l~~ 190 (606)
T 3vq2_A 111 AVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSL 190 (606)
T ss_dssp CTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTTTTHHHHHCTTCCCEEECTT
T ss_pred ccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceecChhhhhhhhccccccceeeccC
Confidence 99999987777889999999999999999986 6799999999999999999999988887777766655 899999
Q ss_pred ccCCccCCccccCCCCCCeEEcccCccc-cccchhccCCCCCCEEeccCCcCccc------cCccccCCC--CCCEEec-
Q 047332 217 NQFSGSIPLSLGNLSNLGILYLYSNSFS-GSIPSIIGNLKSLLQLDLSENQLIGS------IPLSFGNLS--RLTLMSL- 286 (614)
Q Consensus 217 ~~~~~~~~~~l~~l~~L~~L~L~~~~~~-~~~~~~l~~l~~L~~L~L~~n~~~~~------~~~~l~~l~--~L~~L~L- 286 (614)
|.+++..+..+... +|++|++++|.+. +..|..+.+++.|+.+++..+.+... .+..+..+. .++.+++
T Consensus 191 n~l~~~~~~~~~~~-~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~ 269 (606)
T 3vq2_A 191 NPIDFIQDQAFQGI-KLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLT 269 (606)
T ss_dssp CCCCEECTTTTTTC-EEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGGGSEEEEEEEC
T ss_pred CCcceeCcccccCc-eeeeeeccCCccchhHHHHHhccccccccccccccccccCCcccccChHHhhhhhhccHhheecc
Confidence 99996655555544 9999999999886 45677889999999988765443211 111122222 4566677
Q ss_pred CCCcccccCCccCCCCCCCCEeecCCCcccccCCccccCCCCCCEEEccCCcccccCcccccCCCCCcEEEcccccCCcc
Q 047332 287 FNNLLSGSLPPILGNLKSLSALGLHINQLSGVIPSSIGNLSSLRALYLYNNGLCGFVPEEIRYLKSLSELELCKNHLSGV 366 (614)
Q Consensus 287 ~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~ 366 (614)
..+.+.+..|. +..+++|+.++++++.+. .++ .+..+++|+.|++++|.+ +.+| .+ .+++|++|++++|...+.
T Consensus 270 ~~~~~~~~~~~-~~~l~~L~~L~l~~~~~~-~l~-~l~~~~~L~~L~l~~n~l-~~lp-~~-~l~~L~~L~l~~n~~~~~ 343 (606)
T 3vq2_A 270 YTNDFSDDIVK-FHCLANVSAMSLAGVSIK-YLE-DVPKHFKWQSLSIIRCQL-KQFP-TL-DLPFLKSLTLTMNKGSIS 343 (606)
T ss_dssp CCTTCCGGGGS-CGGGTTCSEEEEESCCCC-CCC-CCCTTCCCSEEEEESCCC-SSCC-CC-CCSSCCEEEEESCSSCEE
T ss_pred ccccccccccc-cccCCCCCEEEecCccch-hhh-hccccccCCEEEcccccC-cccc-cC-CCCccceeeccCCcCccc
Confidence 66777777776 888899999999999886 445 778888999999999988 5566 44 888999999999865544
Q ss_pred CCccccCCCCCCEEECcCCCCCCC--CCccccCCCCCcEEEccCCcCCcccccccCCCCCCCEEECcCcccccccC-ccc
Q 047332 367 IPHSIGNLTGLLLLNMCENHLSGP--IPKSFKNLTSVERVLLNQNNLSGKVYEAFGDHPNLTFLNLSQNNFCGEIS-FNW 443 (614)
Q Consensus 367 ~~~~~~~l~~L~~L~ls~n~l~~~--~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~ 443 (614)
. .+..+++|++|++++|.+++. .+..+..+++|++|++++|.+.+ .+..+..+++|++|++++|.+.+..+ ..+
T Consensus 344 ~--~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~ 420 (606)
T 3vq2_A 344 F--KKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAII-MSANFMGLEELQHLDFQHSTLKRVTEFSAF 420 (606)
T ss_dssp C--CCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEE-ECCCCTTCTTCCEEECTTSEEESTTTTTTT
T ss_pred h--hhccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCcccc-chhhccCCCCCCeeECCCCccCCccChhhh
Confidence 3 567888999999999988765 37778889999999999998875 44778889999999999999887776 578
Q ss_pred cCCCCCcEEEcccCcccccCCccCCCCCCCCEEeCCCCcCcc-ccchhccCCCCCCEeeccCCccccCccccccCCCCCC
Q 047332 444 RNFPKLGTFIVSVNNISGSIPPEIGDSPKLQVLDLSSNSIVG-EIPVQLGKLFSLNKLILNLNQLSGGMPLELGSLTELQ 522 (614)
Q Consensus 444 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~ 522 (614)
..+++|+.|++++|.+++..|..+..+++|++|++++|.+.+ .+|..+..+++|++|++++|.+++..|..+.++++|+
T Consensus 421 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~ 500 (606)
T 3vq2_A 421 LSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQ 500 (606)
T ss_dssp TTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCC
T ss_pred hccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCC
Confidence 889999999999999988888888899999999999999887 3688888999999999999999888888889999999
Q ss_pred EEeCCCCcCcccCCccccccCCCCEEeCCCCcCCcCCChhhhcCC-CCCeeeCCCCCCCCCCC
Q 047332 523 YLDLSANKLKSSIPKSIGNLLRLRYLDLSNNQFGHKIPIELEKLI-HLSELDLSYNFLGEEIP 584 (614)
Q Consensus 523 ~L~ls~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~l~~l~-~L~~L~L~~n~~~~~~p 584 (614)
+|++++|.+.+..|..+..+++|++|++++|+++ .+|..+..++ +|++|++++|++....+
T Consensus 501 ~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~p~~~~~l~~~L~~l~l~~N~~~c~c~ 562 (606)
T 3vq2_A 501 LLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIE-TSKGILQHFPKSLAFFNLTNNSVACICE 562 (606)
T ss_dssp EEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCC-CEESCGGGSCTTCCEEECCSCCCCCSST
T ss_pred EEECCCCcCCCcCHHHccCCCcCCEEECCCCcCc-ccCHhHhhhcccCcEEEccCCCcccCCc
Confidence 9999999999888889999999999999999986 5666688886 59999999998876543
No 9
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=6.5e-56 Score=482.73 Aligned_cols=484 Identities=19% Similarity=0.282 Sum_probs=295.4
Q ss_pred chHHHHHHHHHHHhcCCCCCC-------CCCCCCCCCCCCCCCCCCCCCCCCCccc---cceeeCCCCCEEEEEcCCCCC
Q 047332 5 SSKETFALLKWKRSLQNKNIS-------LLSSWTLHPDNASNVPSYSKSKISPCAW---LGISCNQAGRVISINLSSMAL 74 (614)
Q Consensus 5 ~~~~~~~l~~~~~~~~~~~~~-------~~~~w~~~~~~~~~~~~~~~~~~~~c~w---~~~~c~~~~~v~~l~l~~~~l 74 (614)
..+|++||.++++++..+... ...+|. . +.+||.| .||.|+..++|++|+|+++++
T Consensus 28 ~~~d~~aL~~~~~~~~~~~w~~~~~~~~~~~~W~--~------------~~~~c~w~~~~GV~C~~~~~V~~L~L~~~~l 93 (636)
T 4eco_A 28 YIKDYLALKEIWDALNGKNWSQQGFGTQPGANWN--F------------NKELDMWGAQPGVSLNSNGRVTGLSLEGFGA 93 (636)
T ss_dssp HHHHHHHHHHHHHHTTGGGCCCCC------CCCC--C------------SSCGGGTTCCTTEEECTTCCEEEEECTTSCC
T ss_pred HHHHHHHHHHHHHHcCCCCcccCCcCCccCCCCC--C------------CCCcccccCCCCeEEcCCCCEEEEEecCccc
Confidence 347999999999998763211 122564 2 5789999 999999889999999999999
Q ss_pred CcccCcccccCCCCCcEEECCCCCC------Cc------cCcccccCCCCCCEEeCCCCCCCCCCCcCCCC-CC------
Q 047332 75 NGTLQEFAFSSFPHLVQLNLSFNIF------FG------IIPPQIGNLSKLQYLDLGSNQLSGVIPPEIGH-LN------ 135 (614)
Q Consensus 75 ~~~~~~~~~~~l~~L~~L~Ls~~~~------~~------~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~-l~------ 135 (614)
.|.+++ +++++++|++|+|++|.+ .+ .+|... +.+|+ ++++++.+.+.+|..+.. +.
T Consensus 94 ~g~lp~-~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~--~~~l~-l~l~~~~l~~~~~~~~~~~~~~l~~~~ 169 (636)
T 4eco_A 94 SGRVPD-AIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQ--KQKMR-MHYQKTFVDYDPREDFSDLIKDCINSD 169 (636)
T ss_dssp EEEECG-GGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHH--HHHHH-THHHHHHTCCCGGGGSCHHHHHHHHHC
T ss_pred CCcCCh-HHhcCccceEEECcCCccccCCccccccccccCchHHH--HHHHH-hhHHHhhhccCchhhHHHHHHHHhhcC
Confidence 999998 999999999999999965 22 233322 34555 666666666655555441 11
Q ss_pred ------------CCCEEEcc--cccCCCCCCccccCCCCCcEEEeccccCCCC-----------------CCcccC--CC
Q 047332 136 ------------QLRILYFD--VNQLHGSIPPEIGQLSLINVLALCHNNLYGS-----------------IPSSLG--NL 182 (614)
Q Consensus 136 ------------~L~~L~l~--~n~~~~~~~~~~~~l~~L~~L~l~~~~l~~~-----------------~~~~l~--~l 182 (614)
.++.+.+. .|.+++ +|..++++++|++|++++|.+++. +|..++ ++
T Consensus 170 l~~~~~~~~~~~~l~~l~l~~~~n~l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l 248 (636)
T 4eco_A 170 PQQKSIKKSSRITLKDTQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNL 248 (636)
T ss_dssp TTSCCCCCCCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGC
T ss_pred ccccccccccccchhhhhhccccCCCcc-CCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhccc
Confidence 11111111 234444 555555555555555555555543 444444 44
Q ss_pred CCCcEEEeecCCCcccCCccccCCCCCCeeeccCccCCccCCccccCCCCCCeEEcccCcccc-ccchhccCC------C
Q 047332 183 SNLANFYFNNNSLFDSIPLVLGNLNSLSTMDLSQNQFSGSIPLSLGNLSNLGILYLYSNSFSG-SIPSIIGNL------K 255 (614)
Q Consensus 183 ~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~-~~~~~l~~l------~ 255 (614)
++|++|++++|.+.+.+|..++++++|++|++++|. .+++ .+|..+..+ +
T Consensus 249 ~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~-----------------------~l~~~~lp~~~~~L~~~~~l~ 305 (636)
T 4eco_A 249 KDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNR-----------------------GISGEQLKDDWQALADAPVGE 305 (636)
T ss_dssp TTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCT-----------------------TSCHHHHHHHHHHHHHSGGGG
T ss_pred CCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCC-----------------------CCccccchHHHHhhhccccCC
Confidence 444444444444444444444444444444444444 0444 444444333 4
Q ss_pred CCCEEeccCCcCccccCc--cccCCCCCCEEecCCCcccccCCccCCCCCCCCEeecCCCcccccCCccccCCCC-CCEE
Q 047332 256 SLLQLDLSENQLIGSIPL--SFGNLSRLTLMSLFNNLLSGSLPPILGNLKSLSALGLHINQLSGVIPSSIGNLSS-LRAL 332 (614)
Q Consensus 256 ~L~~L~L~~n~~~~~~~~--~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~~~~-L~~L 332 (614)
+|++|++++|.+. .+|. .+..+++|++|++++|.+++.+| .+..+++|++|++++|.++ .+|..+..+++ |+.|
T Consensus 306 ~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L 382 (636)
T 4eco_A 306 KIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQIT-EIPANFCGFTEQVENL 382 (636)
T ss_dssp TCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCSSEEE-ECCTTSEEECTTCCEE
T ss_pred CCCEEECCCCcCC-ccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCCccc-cccHhhhhhcccCcEE
Confidence 5555555555554 4444 45555555555555555554444 4445555555555555555 44444555555 5555
Q ss_pred EccCCcccccCcccccCCC--CCcEEEcccccCCccCCcccc-------CCCCCCEEECcCCCCCCCCCccccCCCCCcE
Q 047332 333 YLYNNGLCGFVPEEIRYLK--SLSELELCKNHLSGVIPHSIG-------NLTGLLLLNMCENHLSGPIPKSFKNLTSVER 403 (614)
Q Consensus 333 ~l~~n~~~~~~~~~~~~~~--~L~~L~l~~n~~~~~~~~~~~-------~l~~L~~L~ls~n~l~~~~~~~~~~~~~L~~ 403 (614)
++++|.+. .+|..+...+ +|++|++++|.+++..|..+. .+++|+.|++++|.++...+..+..+++|++
T Consensus 383 ~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~ 461 (636)
T 4eco_A 383 SFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSS 461 (636)
T ss_dssp ECCSSCCS-SCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSE
T ss_pred EccCCcCc-ccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCE
Confidence 55555555 3444443332 555666666666555555555 4556666666666666443344555666666
Q ss_pred EEccCCcCCcccccccC-------CCCCCCEEECcCcccccccCcccc--CCCCCcEEEcccCcccccCCccCCCCCCCC
Q 047332 404 VLLNQNNLSGKVYEAFG-------DHPNLTFLNLSQNNFCGEISFNWR--NFPKLGTFIVSVNNISGSIPPEIGDSPKLQ 474 (614)
Q Consensus 404 L~l~~n~~~~~~~~~~~-------~~~~L~~L~l~~~~~~~~~~~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~ 474 (614)
|++++|+++......+. .+++|++|++++|.+. .+|..+. .+++|+.|++++|++++ +|..+..+++|+
T Consensus 462 L~Ls~N~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~-ip~~~~~l~~L~ 539 (636)
T 4eco_A 462 INLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLT-KLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLK 539 (636)
T ss_dssp EECCSSCCSBCCSSSSEETTEECTTGGGCCEEECCSSCCC-BCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCSSCC
T ss_pred EECCCCCCCCcCHHHhccccccccccCCccEEECcCCcCC-ccChhhhhccCCCcCEEECCCCCCCC-cChhhhcCCCCC
Confidence 66666666632222222 2338888888888887 5666665 78888888888888876 777777788888
Q ss_pred EEeCCCCcCccccchhccCCCCCCEeeccCCccccCccccccCCCCCCEEeCCCCcCcccCCccccccCCCCEEeCCCCc
Q 047332 475 VLDLSSNSIVGEIPVQLGKLFSLNKLILNLNQLSGGMPLELGSLTELQYLDLSANKLKSSIPKSIGNLLRLRYLDLSNNQ 554 (614)
Q Consensus 475 ~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~l~~n~ 554 (614)
+|++++|+ ++++|.+.+.+|..+..+++|++|++++|.+ +.+|..+. ++|+.|++++|+
T Consensus 540 ~L~Ls~N~------------------~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l-~~ip~~~~--~~L~~L~Ls~N~ 598 (636)
T 4eco_A 540 GFGIRNQR------------------DAQGNRTLREWPEGITLCPSLTQLQIGSNDI-RKVNEKIT--PNISVLDIKDNP 598 (636)
T ss_dssp EEECCSCB------------------CTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC--TTCCEEECCSCT
T ss_pred EEECCCCc------------------ccccCcccccChHHHhcCCCCCEEECCCCcC-CccCHhHh--CcCCEEECcCCC
Confidence 88887665 4566777767777777777777777777777 46666554 677777777776
Q ss_pred CCc
Q 047332 555 FGH 557 (614)
Q Consensus 555 ~~~ 557 (614)
+..
T Consensus 599 l~~ 601 (636)
T 4eco_A 599 NIS 601 (636)
T ss_dssp TCE
T ss_pred Ccc
Confidence 654
No 10
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=3.1e-53 Score=477.23 Aligned_cols=509 Identities=24% Similarity=0.223 Sum_probs=365.5
Q ss_pred CCCCcEEECCCCCCCccCcccccCCCCCCEEeCCCCCCCCCC-CcCCCCCCCCCEEEcccccCCCCCCccccCCCCCcEE
Q 047332 86 FPHLVQLNLSFNIFFGIIPPQIGNLSKLQYLDLGSNQLSGVI-PPEIGHLNQLRILYFDVNQLHGSIPPEIGQLSLINVL 164 (614)
Q Consensus 86 l~~L~~L~Ls~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~-~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L 164 (614)
.+++++|+|++|.+++..+.+|.++++|++|++++|...+.+ |.+|+++++|++|+|++|.+.+..|..|.++++|++|
T Consensus 23 p~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L 102 (844)
T 3j0a_A 23 LNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFEL 102 (844)
T ss_dssp CTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCE
T ss_pred CCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEe
Confidence 356666666666666666666666666666666666444333 5566666666666666666665556666666666666
Q ss_pred EeccccCCCCCCcc--cCCCCCCcEEEeecCCCcccCC-ccccCCCCCCeeeccCccCCccCCccccCC--CCCCeEEcc
Q 047332 165 ALCHNNLYGSIPSS--LGNLSNLANFYFNNNSLFDSIP-LVLGNLNSLSTMDLSQNQFSGSIPLSLGNL--SNLGILYLY 239 (614)
Q Consensus 165 ~l~~~~l~~~~~~~--l~~l~~L~~L~l~~~~~~~~~~-~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l--~~L~~L~L~ 239 (614)
++++|.+++.+|.. +..+++|++|++++|.+.+..+ ..++++++|++|++++|.+++..+..+..+ ++|++|+++
T Consensus 103 ~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~ 182 (844)
T 3j0a_A 103 RLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLA 182 (844)
T ss_dssp ECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEEC
T ss_pred eCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceEECC
Confidence 66666666544443 5666666666666666655433 356666666666666666665556666555 566666666
Q ss_pred cCccccccchhccCCCC------CCEEeccCCcCccccCccccCC---CCCCEEecCCC---------cccccCCccCCC
Q 047332 240 SNSFSGSIPSIIGNLKS------LLQLDLSENQLIGSIPLSFGNL---SRLTLMSLFNN---------LLSGSLPPILGN 301 (614)
Q Consensus 240 ~~~~~~~~~~~l~~l~~------L~~L~L~~n~~~~~~~~~l~~l---~~L~~L~L~~~---------~~~~~~~~~l~~ 301 (614)
+|.+.+..|..+..+++ |++|++++|.+.+..+..+... ..++.+.+..+ .+.+.....+..
T Consensus 183 ~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~ 262 (844)
T 3j0a_A 183 ANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAG 262 (844)
T ss_dssp CSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTT
T ss_pred CCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCChhhhhc
Confidence 66666655554444443 6777777766655555444322 45566665532 222222333444
Q ss_pred C--CCCCEeecCCCcccccCCccccCCCCCCEEEccCCcccccCcccccCCCCCcEEEcccccCCccCCccccCCCCCCE
Q 047332 302 L--KSLSALGLHINQLSGVIPSSIGNLSSLRALYLYNNGLCGFVPEEIRYLKSLSELELCKNHLSGVIPHSIGNLTGLLL 379 (614)
Q Consensus 302 l--~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~ 379 (614)
+ ++|+.|++++|.+.+..+..+..+++|+.|++++|++.+..+..+..+++|++|++++|.+++..+..+..+++|+.
T Consensus 263 l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 342 (844)
T 3j0a_A 263 LARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAY 342 (844)
T ss_dssp TTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCE
T ss_pred cccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHHhcCCCCCCE
Confidence 3 67888888888888777788888888888888888888888888888888888888888888777888888888888
Q ss_pred EECcCCCCCCCCCccccCCCCCcEEEccCCcCCcccccccCCCCCCCEEECcCcccccccCccccCCCCCcEEEcccCcc
Q 047332 380 LNMCENHLSGPIPKSFKNLTSVERVLLNQNNLSGKVYEAFGDHPNLTFLNLSQNNFCGEISFNWRNFPKLGTFIVSVNNI 459 (614)
Q Consensus 380 L~ls~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 459 (614)
|++++|.+....+..|..+++|+.|++++|.+++. ..+++|+.|++++|++.. ++. ...+++.+++++|++
T Consensus 343 L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~i-----~~~~~L~~L~l~~N~l~~-l~~---~~~~l~~L~ls~N~l 413 (844)
T 3j0a_A 343 IDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTI-----HFIPSIPDIFLSGNKLVT-LPK---INLTANLIHLSENRL 413 (844)
T ss_dssp EECCSCCCCCCCSSCSCSCCCCCEEEEETCCSCCC-----SSCCSCSEEEEESCCCCC-CCC---CCTTCCEEECCSCCC
T ss_pred EECCCCCCCccChhhhcCCCCCCEEECCCCCCCcc-----cCCCCcchhccCCCCccc-ccc---cccccceeecccCcc
Confidence 88888888877777888888889999888887643 237788888988888873 332 256788889998888
Q ss_pred cccC-CccCCCCCCCCEEeCCCCcCccccch-hccCCCCCCEeeccCCccc-----cCccccccCCCCCCEEeCCCCcCc
Q 047332 460 SGSI-PPEIGDSPKLQVLDLSSNSIVGEIPV-QLGKLFSLNKLILNLNQLS-----GGMPLELGSLTELQYLDLSANKLK 532 (614)
Q Consensus 460 ~~~~-~~~~~~~~~L~~L~l~~~~~~~~~~~-~~~~~~~L~~L~l~~n~~~-----~~~~~~~~~l~~L~~L~ls~n~l~ 532 (614)
.+.. +..+..+++|+.|++++|.+.+..+. .+..+++|+.|++++|.+. +..+..|.++++|+.|++++|.++
T Consensus 414 ~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~ 493 (844)
T 3j0a_A 414 ENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLN 493 (844)
T ss_dssp CSSTTHHHHTTCTTCCEEEEESCCCCCCCSSSSSCSCTTCCBCEEESCCCSSSCCSCCCSSCSSCBCCEECCCCCHHHHT
T ss_pred ccCchhhhhhcCCccceeeCCCCcccccccccccccCCccccccCCCCccccccccccchhhhcCcccccEEECCCCccc
Confidence 7542 23355788899999999988754332 3556788999999999886 334566888899999999999999
Q ss_pred ccCCccccccCCCCEEeCCCCcCCcCCChhhhcCCCCCeeeCCCCCCCCCCCccccCCCCCCeEECcCCCCcccCC
Q 047332 533 SSIPKSIGNLLRLRYLDLSNNQFGHKIPIELEKLIHLSELDLSYNFLGEEIPFQICNVKSLEKLNLCHNNLLGSFQ 608 (614)
Q Consensus 533 ~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~sL~~L~l~~n~l~~~ip 608 (614)
+..|..|..+++|+.|++++|++++..|..+. ++|+.|+|++|++.+.+|..| .+|+.+++++|++.+..+
T Consensus 494 ~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~--~~L~~L~Ls~N~l~~~~~~~~---~~L~~l~l~~Np~~C~c~ 564 (844)
T 3j0a_A 494 SLPPGVFSHLTALRGLSLNSNRLTVLSHNDLP--ANLEILDISRNQLLAPNPDVF---VSLSVLDITHNKFICECE 564 (844)
T ss_dssp TCCTTSSSSCCSCSEEEEESCCCSSCCCCCCC--SCCCEEEEEEECCCCCCSCCC---SSCCEEEEEEECCCCSSS
T ss_pred ccChhHccchhhhheeECCCCCCCccChhhhh--ccccEEECCCCcCCCCChhHh---CCcCEEEecCCCcccccc
Confidence 88888889999999999999999887776665 789999999999998888765 478899999999887654
No 11
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=7.4e-53 Score=465.34 Aligned_cols=502 Identities=20% Similarity=0.239 Sum_probs=312.9
Q ss_pred chHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccc------------cceeeCCCCCEEEEEcCCC
Q 047332 5 SSKETFALLKWKRSLQNKNISLLSSWTLHPDNASNVPSYSKSKISPCAW------------LGISCNQAGRVISINLSSM 72 (614)
Q Consensus 5 ~~~~~~~l~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~c~w------------~~~~c~~~~~v~~l~l~~~ 72 (614)
..+|++||++||+++.+ | +|+... .|.+...++|.| .||.|+..++|++|+|+++
T Consensus 267 ~~~d~~ALl~~k~~l~~-~-----~W~~~~-------~~~~~~~~~C~W~~~~~~~~w~~~~GV~C~~~~~V~~L~Ls~~ 333 (876)
T 4ecn_A 267 YIKDYKALKAIWEALDG-K-----NWRYYS-------GTINNTIHSLNWNFNKELDMWGDQPGVDLDNNGRVTGLSLAGF 333 (876)
T ss_dssp HHHHHHHHHHHHHHTTG-G-----GCCCCC-------SSCSSCCCCCSCCCSSCGGGTTCCTTEEECTTSCEEEEECTTT
T ss_pred chHHHHHHHHHHHHcCC-C-----CCCcCC-------CcccccCCccccccccccccccCcCceEecCCCCEEEEECccC
Confidence 45799999999999975 3 786211 000011223999 9999998899999999999
Q ss_pred CCCcccCcccccCCCCCcEEEC-CCCCCCccCcccccCCC-CCCE--------------EeC-CCCCCC-----------
Q 047332 73 ALNGTLQEFAFSSFPHLVQLNL-SFNIFFGIIPPQIGNLS-KLQY--------------LDL-GSNQLS----------- 124 (614)
Q Consensus 73 ~l~~~~~~~~~~~l~~L~~L~L-s~~~~~~~~~~~l~~l~-~L~~--------------L~L-s~n~l~----------- 124 (614)
++.|.+|+ +++++++|++|+| ++|.+.|..+....... .+.. ++. ....+.
T Consensus 334 ~L~G~ip~-~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~l~~~~l~~~~ 412 (876)
T 4ecn_A 334 GAKGRVPD-AIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNP 412 (876)
T ss_dssp CCEEEECG-GGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHHHHTCT
T ss_pred CCCCcCch-HHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhhHHHHHHhhhCc
Confidence 99999998 9999999999999 88877665332111000 0000 000 000000
Q ss_pred CCCCcCCCCCCCCCEEEccc--ccCCCCCCccccCCCCCcEEEeccccCCC-----------------CCCcccC--CCC
Q 047332 125 GVIPPEIGHLNQLRILYFDV--NQLHGSIPPEIGQLSLINVLALCHNNLYG-----------------SIPSSLG--NLS 183 (614)
Q Consensus 125 ~~~~~~l~~l~~L~~L~l~~--n~~~~~~~~~~~~l~~L~~L~l~~~~l~~-----------------~~~~~l~--~l~ 183 (614)
...+........++.+.+.. |.+++ +|..++++++|++|++++|.+++ .+|..++ +++
T Consensus 413 ~~~~i~~~~~l~l~~l~l~~~~N~L~~-IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~ 491 (876)
T 4ecn_A 413 EMKPIKKDSRISLKDTQIGNLTNRITF-ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLK 491 (876)
T ss_dssp TSCCCCCCCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCT
T ss_pred cccccccccccchhhceeccccCcccc-hhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCC
Confidence 00000011122222222322 44444 55555555555555555555555 2555555 666
Q ss_pred CCcEEEeecCCCcccCCccccCCCCCCeeeccCcc-CCc-cCCccccCC-------CCCCeEEcccCccccccch--hcc
Q 047332 184 NLANFYFNNNSLFDSIPLVLGNLNSLSTMDLSQNQ-FSG-SIPLSLGNL-------SNLGILYLYSNSFSGSIPS--IIG 252 (614)
Q Consensus 184 ~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~-~~~-~~~~~l~~l-------~~L~~L~L~~~~~~~~~~~--~l~ 252 (614)
+|++|++++|.+.+.+|..++++++|+.|++++|. +++ .+|..+..+ ++|++|++++|.++ .+|. .+.
T Consensus 492 ~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~ 570 (876)
T 4ecn_A 492 DLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQ 570 (876)
T ss_dssp TCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHT
T ss_pred CCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhh
Confidence 66666666666666666666666666666666665 555 455444333 36666666666666 5665 666
Q ss_pred CCCCCCEEeccCCcCccccCccccCCCCCCEEecCCCcccccCCccCCCCCC-CCEeecCCCcccccCCccccCCCC--C
Q 047332 253 NLKSLLQLDLSENQLIGSIPLSFGNLSRLTLMSLFNNLLSGSLPPILGNLKS-LSALGLHINQLSGVIPSSIGNLSS--L 329 (614)
Q Consensus 253 ~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~-L~~L~L~~n~l~~~~~~~l~~~~~--L 329 (614)
.+++|+.|++++|.+. .+| .+..+++|+.|++++|.+. .+|..+..+++ |++|++++|.++ .+|..+..++. |
T Consensus 571 ~L~~L~~L~Ls~N~l~-~lp-~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~-~lp~~~~~~~~~~L 646 (876)
T 4ecn_A 571 KMVKLGLLDCVHNKVR-HLE-AFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK-YIPNIFNAKSVYVM 646 (876)
T ss_dssp TCTTCCEEECTTSCCC-BCC-CCCTTSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCC-SCCSCCCTTCSSCE
T ss_pred cCCCCCEEECCCCCcc-cch-hhcCCCcceEEECcCCccc-cchHHHhhccccCCEEECcCCCCC-cCchhhhccccCCC
Confidence 6666666666666665 555 5666666666666666666 56666666666 666666666666 55555554433 6
Q ss_pred CEEEccCCcccccCcccc---c--CCCCCcEEEcccccCCccCCcc-ccCCCCCCEEECcCCCCCCCCCcccc-------
Q 047332 330 RALYLYNNGLCGFVPEEI---R--YLKSLSELELCKNHLSGVIPHS-IGNLTGLLLLNMCENHLSGPIPKSFK------- 396 (614)
Q Consensus 330 ~~L~l~~n~~~~~~~~~~---~--~~~~L~~L~l~~n~~~~~~~~~-~~~l~~L~~L~ls~n~l~~~~~~~~~------- 396 (614)
+.|++++|.+.+.+|... . .+++|+.|++++|.++ .+|.. +..+++|+.|++++|.++......+.
T Consensus 647 ~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~-~lp~~~~~~l~~L~~L~Ls~N~L~~ip~~~~~~~~~~l~ 725 (876)
T 4ecn_A 647 GSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQ-KFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYK 725 (876)
T ss_dssp EEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCC-SCCHHHHHTTCCCSEEECCSCCCSCCCTTSSSCTTSCCT
T ss_pred CEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCC-ccCHHHHccCCCCCEEECCCCcCCccChHHhcccccccc
Confidence 667777666666444221 1 2346777777777776 33433 34666777777777776633222222
Q ss_pred CCCCCcEEEccCCcCCcccccccC--CCCCCCEEECcCcccccccCccccCCCCCcEEEccc------CcccccCCccCC
Q 047332 397 NLTSVERVLLNQNNLSGKVYEAFG--DHPNLTFLNLSQNNFCGEISFNWRNFPKLGTFIVSV------NNISGSIPPEIG 468 (614)
Q Consensus 397 ~~~~L~~L~l~~n~~~~~~~~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~------~~~~~~~~~~~~ 468 (614)
++++|+.|++++|+++ .++..+. .+++|+.|++++|.+.+ +|..+..+++|+.|++++ |++.+.+|..+.
T Consensus 726 nl~~L~~L~Ls~N~L~-~lp~~l~~~~l~~L~~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~ 803 (876)
T 4ecn_A 726 NTYLLTTIDLRFNKLT-SLSDDFRATTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGIT 803 (876)
T ss_dssp TGGGCCEEECCSSCCC-CCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGG
T ss_pred ccCCccEEECCCCCCc-cchHHhhhccCCCcCEEEeCCCCCCc-cchhhhcCCCCCEEECCCCCCcccccccccChHHHh
Confidence 2237777777777777 4555555 77777777777777776 566667777777777765 777788888888
Q ss_pred CCCCCCEEeCCCCcCccccchhccCCCCCCEeeccCCccccCccccccCCCCCCEEeCCCCcCc
Q 047332 469 DSPKLQVLDLSSNSIVGEIPVQLGKLFSLNKLILNLNQLSGGMPLELGSLTELQYLDLSANKLK 532 (614)
Q Consensus 469 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~ls~n~l~ 532 (614)
.+++|+.|++++|.+ +.+|..+. ++|+.|++++|++....+..+.....+..+.+.+|...
T Consensus 804 ~L~~L~~L~Ls~N~L-~~Ip~~l~--~~L~~LdLs~N~l~~i~~~~~~~~~~~~~~~L~~n~~~ 864 (876)
T 4ecn_A 804 TCPSLIQLQIGSNDI-RKVDEKLT--PQLYILDIADNPNISIDVTSVCPYIEAGMYVLLYDKTQ 864 (876)
T ss_dssp GCSSCCEEECCSSCC-CBCCSCCC--SSSCEEECCSCTTCEEECGGGHHHHHTTCCEEECCTTS
T ss_pred cCCCCCEEECCCCCC-CccCHhhc--CCCCEEECCCCCCCccChHHccccccchheeecCCCcc
Confidence 889999999999988 57777654 58999999999887655555544444555555555543
No 12
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=1.4e-51 Score=463.83 Aligned_cols=515 Identities=23% Similarity=0.253 Sum_probs=440.6
Q ss_pred ccccceeeCCCCCEEEEEcCCCCCCcccCcccccCCCCCcEEECCCCCCCccC-cccccCCCCCCEEeCCCCCCCCCCCc
Q 047332 51 CAWLGISCNQAGRVISINLSSMALNGTLQEFAFSSFPHLVQLNLSFNIFFGII-PPQIGNLSKLQYLDLGSNQLSGVIPP 129 (614)
Q Consensus 51 c~w~~~~c~~~~~v~~l~l~~~~l~~~~~~~~~~~l~~L~~L~Ls~~~~~~~~-~~~l~~l~~L~~L~Ls~n~l~~~~~~ 129 (614)
|.|..|.+ -..+++.|+|+++.+.+..+. .|..+++|++|+|++|...+.+ |.+|.++++|++|+|++|.+.+..|.
T Consensus 14 ~~L~~vP~-lp~~l~~LdLs~N~i~~i~~~-~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~ 91 (844)
T 3j0a_A 14 CNLTQVPQ-VLNTTERLLLSFNYIRTVTAS-SFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPD 91 (844)
T ss_dssp CCSSCCCS-SCTTCCEEEEESCCCCEECSS-SCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTT
T ss_pred CCCCCCCC-CCCCcCEEECCCCcCCccChh-HCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHh
Confidence 45666666 557899999999999887766 8999999999999999665554 78999999999999999999988899
Q ss_pred CCCCCCCCCEEEcccccCCCCCCcc--ccCCCCCcEEEeccccCCCCCC-cccCCCCCCcEEEeecCCCcccCCccccCC
Q 047332 130 EIGHLNQLRILYFDVNQLHGSIPPE--IGQLSLINVLALCHNNLYGSIP-SSLGNLSNLANFYFNNNSLFDSIPLVLGNL 206 (614)
Q Consensus 130 ~l~~l~~L~~L~l~~n~~~~~~~~~--~~~l~~L~~L~l~~~~l~~~~~-~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l 206 (614)
.|+++++|++|++++|.+.+.+|.. +.++++|++|++++|.+++..+ ..++++++|++|++++|.+.+..+..+..+
T Consensus 92 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l 171 (844)
T 3j0a_A 92 AFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPL 171 (844)
T ss_dssp SSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHH
T ss_pred HccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccc
Confidence 9999999999999999999766665 8999999999999999987655 578999999999999999999888888877
Q ss_pred --CCCCeeeccCccCCccCCccccCCCC------CCeEEcccCccccccchhccC---CCCCCEEeccCCc---------
Q 047332 207 --NSLSTMDLSQNQFSGSIPLSLGNLSN------LGILYLYSNSFSGSIPSIIGN---LKSLLQLDLSENQ--------- 266 (614)
Q Consensus 207 --~~L~~L~l~~~~~~~~~~~~l~~l~~------L~~L~L~~~~~~~~~~~~l~~---l~~L~~L~L~~n~--------- 266 (614)
++|+.|++++|.+.+..+..+..+.+ |++|++++|.+++..+..+.. ...++.+.++.+.
T Consensus 172 ~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~ 251 (844)
T 3j0a_A 172 QGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHN 251 (844)
T ss_dssp HHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSS
T ss_pred cCCccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccc
Confidence 89999999999999888887776665 999999999988777766543 3578888877432
Q ss_pred CccccCccccCC--CCCCEEecCCCcccccCCccCCCCCCCCEeecCCCcccccCCccccCCCCCCEEEccCCcccccCc
Q 047332 267 LIGSIPLSFGNL--SRLTLMSLFNNLLSGSLPPILGNLKSLSALGLHINQLSGVIPSSIGNLSSLRALYLYNNGLCGFVP 344 (614)
Q Consensus 267 ~~~~~~~~l~~l--~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~~~~~~~ 344 (614)
+.......+..+ ++|+.|++++|.+.+..+..+..+++|+.|++++|.+.+..+..|..+++|+.|++++|.+.+..+
T Consensus 252 l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~ 331 (844)
T 3j0a_A 252 IKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYS 331 (844)
T ss_dssp STTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCS
T ss_pred cCCCChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCH
Confidence 222233344443 789999999999998888899999999999999999998888899999999999999999999888
Q ss_pred ccccCCCCCcEEEcccccCCccCCccccCCCCCCEEECcCCCCCCCCCccccCCCCCcEEEccCCcCCcccccccCCCCC
Q 047332 345 EEIRYLKSLSELELCKNHLSGVIPHSIGNLTGLLLLNMCENHLSGPIPKSFKNLTSVERVLLNQNNLSGKVYEAFGDHPN 424 (614)
Q Consensus 345 ~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~ 424 (614)
..+..+++|++|++++|.+++..+..|..+++|+.|++++|.+++. ..+++|+.+++++|++... +. ....
T Consensus 332 ~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~i-----~~~~~L~~L~l~~N~l~~l-~~---~~~~ 402 (844)
T 3j0a_A 332 SNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTI-----HFIPSIPDIFLSGNKLVTL-PK---INLT 402 (844)
T ss_dssp CSCSSCTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSCCC-----SSCCSCSEEEEESCCCCCC-CC---CCTT
T ss_pred HHhcCCCCCCEEECCCCCCCccChhhhcCCCCCCEEECCCCCCCcc-----cCCCCcchhccCCCCcccc-cc---cccc
Confidence 9999999999999999999988888899999999999999998753 3378999999999998733 32 2568
Q ss_pred CCEEECcCcccccccC-ccccCCCCCcEEEcccCcccccCCc-cCCCCCCCCEEeCCCCcCc-----cccchhccCCCCC
Q 047332 425 LTFLNLSQNNFCGEIS-FNWRNFPKLGTFIVSVNNISGSIPP-EIGDSPKLQVLDLSSNSIV-----GEIPVQLGKLFSL 497 (614)
Q Consensus 425 L~~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~-----~~~~~~~~~~~~L 497 (614)
++.|++++|.+.+... ..+..+++|+.|++++|++++..+. .+..+++|+.|++++|.+. +..+..+..+++|
T Consensus 403 l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L 482 (844)
T 3j0a_A 403 ANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHL 482 (844)
T ss_dssp CCEEECCSCCCCSSTTHHHHTTCTTCCEEEEESCCCCCCCSSSSSCSCTTCCBCEEESCCCSSSCCSCCCSSCSSCBCCE
T ss_pred cceeecccCccccCchhhhhhcCCccceeeCCCCcccccccccccccCCccccccCCCCccccccccccchhhhcCcccc
Confidence 9999999999886432 2355799999999999999865443 3456899999999999986 3445668889999
Q ss_pred CEeeccCCccccCccccccCCCCCCEEeCCCCcCcccCCccccccCCCCEEeCCCCcCCcCCChhhhcCCCCCeeeCCCC
Q 047332 498 NKLILNLNQLSGGMPLELGSLTELQYLDLSANKLKSSIPKSIGNLLRLRYLDLSNNQFGHKIPIELEKLIHLSELDLSYN 577 (614)
Q Consensus 498 ~~L~l~~n~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~L~~n 577 (614)
+.|++++|.+++..|..|.++++|+.|++++|.+++..+..+. ++|+.|++++|++++..|..+ ++|+.|++++|
T Consensus 483 ~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~--~~L~~L~Ls~N~l~~~~~~~~---~~L~~l~l~~N 557 (844)
T 3j0a_A 483 QVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLP--ANLEILDISRNQLLAPNPDVF---VSLSVLDITHN 557 (844)
T ss_dssp ECCCCCHHHHTTCCTTSSSSCCSCSEEEEESCCCSSCCCCCCC--SCCCEEEEEEECCCCCCSCCC---SSCCEEEEEEE
T ss_pred cEEECCCCcccccChhHccchhhhheeECCCCCCCccChhhhh--ccccEEECCCCcCCCCChhHh---CCcCEEEecCC
Confidence 9999999999988888899999999999999999977666665 899999999999999988765 47899999999
Q ss_pred CCCC
Q 047332 578 FLGE 581 (614)
Q Consensus 578 ~~~~ 581 (614)
++..
T Consensus 558 p~~C 561 (844)
T 3j0a_A 558 KFIC 561 (844)
T ss_dssp CCCC
T ss_pred Cccc
Confidence 8765
No 13
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=6.3e-50 Score=433.23 Aligned_cols=510 Identities=21% Similarity=0.217 Sum_probs=428.0
Q ss_pred CcEEECCCCCCCccCcccccCCCCCCEEeCCCCCCCCCCCcCCCCCCCCCEEEcccccCCCCCCccccCCCCCcEEEecc
Q 047332 89 LVQLNLSFNIFFGIIPPQIGNLSKLQYLDLGSNQLSGVIPPEIGHLNQLRILYFDVNQLHGSIPPEIGQLSLINVLALCH 168 (614)
Q Consensus 89 L~~L~Ls~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~ 168 (614)
.++++.++.+++. +|..+. +++++|++++|.+++..+.+|..+++|++|++++|.+.+..+..|.++++|++|++++
T Consensus 9 ~~~~~c~~~~l~~-ip~~l~--~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~ 85 (570)
T 2z63_A 9 NITYQCMELNFYK-IPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTG 85 (570)
T ss_dssp TTEEECCSSCCSS-CCSSSC--SSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTT
T ss_pred CcEEEeCCCCccc-cCCCcc--ccccEEEccCCccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcC
Confidence 4567777776654 565443 5799999999999988888999999999999999999977788899999999999999
Q ss_pred ccCCCCCCcccCCCCCCcEEEeecCCCcccCCccccCCCCCCeeeccCccCCc-cCCccccCCCCCCeEEcccCcccccc
Q 047332 169 NNLYGSIPSSLGNLSNLANFYFNNNSLFDSIPLVLGNLNSLSTMDLSQNQFSG-SIPLSLGNLSNLGILYLYSNSFSGSI 247 (614)
Q Consensus 169 ~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~-~~~~~l~~l~~L~~L~L~~~~~~~~~ 247 (614)
|.+++..|..+..+++|++|++++|.+.+..+..++++++|++|++++|.+++ .+|..+.++++|++|++++|.+++..
T Consensus 86 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~ 165 (570)
T 2z63_A 86 NPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIY 165 (570)
T ss_dssp CCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEEC
T ss_pred CcCCccCHhhhcCccccccccccccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceec
Confidence 99998888899999999999999999987766679999999999999999986 46899999999999999999998777
Q ss_pred chhccCCCCC----CEEeccCCcCccccCccccCCCCCCEEecCCCcccc-cCCccCCCCCCCCEeecCCCcc------c
Q 047332 248 PSIIGNLKSL----LQLDLSENQLIGSIPLSFGNLSRLTLMSLFNNLLSG-SLPPILGNLKSLSALGLHINQL------S 316 (614)
Q Consensus 248 ~~~l~~l~~L----~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~~~~~~-~~~~~l~~l~~L~~L~L~~n~l------~ 316 (614)
+..++.+++| +.+++++|.+.+..+..+... +|+.|++++|.... .++..+..+++++...+....+ .
T Consensus 166 ~~~~~~l~~L~~~~~~L~l~~n~l~~~~~~~~~~~-~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~ 244 (570)
T 2z63_A 166 CTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEI-RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLE 244 (570)
T ss_dssp GGGGHHHHTCTTCCCEEECTTCCCCEECTTTTTTC-EEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCE
T ss_pred HHHccchhccchhhhhcccCCCCceecCHHHhccC-cceeEecccccccccchhhhhcCccccceeeeccccccCchhhh
Confidence 7778877777 899999999988777777665 79999999885432 2344455666666655433221 1
Q ss_pred ccCCccccCCC--CCCEEEccCC-cccccCcccccCCCCCcEEEcccccCCccCCccccCCCCCCEEECcCCCCCCCCCc
Q 047332 317 GVIPSSIGNLS--SLRALYLYNN-GLCGFVPEEIRYLKSLSELELCKNHLSGVIPHSIGNLTGLLLLNMCENHLSGPIPK 393 (614)
Q Consensus 317 ~~~~~~l~~~~--~L~~L~l~~n-~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~ 393 (614)
......+..++ .++.+++.++ .+.+..+..+..+++|++|++++|.++ .+|..+..+ +|+.|++++|.+. .+|.
T Consensus 245 ~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~-~l~~~~~~~-~L~~L~l~~n~~~-~l~~ 321 (570)
T 2z63_A 245 KFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIE-RVKDFSYNF-GWQHLELVNCKFG-QFPT 321 (570)
T ss_dssp ECCTTTTGGGGGSEEEEEEEEETTEEESCSTTTTGGGTTCSEEEEESCEEC-SCCBCCSCC-CCSEEEEESCBCS-SCCB
T ss_pred hcchhhhccccccchhhhhhhcchhhhhhchhhhcCcCcccEEEecCccch-hhhhhhccC-CccEEeeccCccc-ccCc
Confidence 11122233333 3566777777 677778888888999999999999998 577778888 9999999999988 4444
Q ss_pred cccCCCCCcEEEccCCcCCcccccccCCCCCCCEEECcCccccccc--CccccCCCCCcEEEcccCcccccCCccCCCCC
Q 047332 394 SFKNLTSVERVLLNQNNLSGKVYEAFGDHPNLTFLNLSQNNFCGEI--SFNWRNFPKLGTFIVSVNNISGSIPPEIGDSP 471 (614)
Q Consensus 394 ~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~--~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~ 471 (614)
..+++|+.|++.+|.+.+..+. ..+++|++|++++|.+.+.. +..+..+++|+.|++++|.+.+..+. +..++
T Consensus 322 --~~l~~L~~L~l~~n~~~~~~~~--~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~l~ 396 (570)
T 2z63_A 322 --LKLKSLKRLTFTSNKGGNAFSE--VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSN-FLGLE 396 (570)
T ss_dssp --CBCSSCCEEEEESCBSCCBCCC--CBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEE-EETCT
T ss_pred --ccccccCEEeCcCCcccccccc--ccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCcccccccc-ccccC
Confidence 4788999999999988765544 67899999999999988654 56678899999999999999865444 88899
Q ss_pred CCCEEeCCCCcCccccc-hhccCCCCCCEeeccCCccccCccccccCCCCCCEEeCCCCcCc-ccCCccccccCCCCEEe
Q 047332 472 KLQVLDLSSNSIVGEIP-VQLGKLFSLNKLILNLNQLSGGMPLELGSLTELQYLDLSANKLK-SSIPKSIGNLLRLRYLD 549 (614)
Q Consensus 472 ~L~~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~ls~n~l~-~~~~~~l~~l~~L~~L~ 549 (614)
+|++|++++|.+.+..+ ..+..+++|++|++++|.+.+..|..+.++++|++|++++|.+. +.+|..+..+++|+.|+
T Consensus 397 ~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~ 476 (570)
T 2z63_A 397 QLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLD 476 (570)
T ss_dssp TCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEE
T ss_pred CCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEE
Confidence 99999999999986655 56889999999999999999888999999999999999999997 57889999999999999
Q ss_pred CCCCcCCcCCChhhhcCCCCCeeeCCCCCCCCCCCccccCCCCCCeEECcCCCCcccCCCC
Q 047332 550 LSNNQFGHKIPIELEKLIHLSELDLSYNFLGEEIPFQICNVKSLEKLNLCHNNLLGSFQQK 610 (614)
Q Consensus 550 l~~n~~~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~sL~~L~l~~n~l~~~ip~~ 610 (614)
+++|++++..|..+..+++|++|++++|++.+..|..|..+++|++|++++|++.+.+|..
T Consensus 477 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~~ 537 (570)
T 2z63_A 477 LSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRI 537 (570)
T ss_dssp CTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTTT
T ss_pred CCCCccccCChhhhhcccCCCEEeCCCCcCCCCCHHHhhcccCCcEEEecCCcccCCCcch
Confidence 9999999988999999999999999999999988888999999999999999999998853
No 14
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=5.4e-50 Score=433.74 Aligned_cols=490 Identities=21% Similarity=0.188 Sum_probs=354.8
Q ss_pred CCCcEEECCCCCCCccCcccccCCCCCCEEeCCCCCCCCCCCcCCCCCCCCCEEEcccccCCCCCCccccCCCCCcEEEe
Q 047332 87 PHLVQLNLSFNIFFGIIPPQIGNLSKLQYLDLGSNQLSGVIPPEIGHLNQLRILYFDVNQLHGSIPPEIGQLSLINVLAL 166 (614)
Q Consensus 87 ~~L~~L~Ls~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l 166 (614)
+++++|++++|.+++..+.+|.++++|++|++++|.+++..+..|+++++|++|++++|.+++..|..|.++++|++|++
T Consensus 28 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 107 (570)
T 2z63_A 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA 107 (570)
T ss_dssp SSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEEC
T ss_pred ccccEEEccCCccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCccccccccc
Confidence 35666777777666666666666777777777776666555566666777777777777666555566666777777777
Q ss_pred ccccCCCCCCcccCCCCCCcEEEeecCCCcc-cCCccccCCCCCCeeeccCccCCccCCccccCCCCC----CeEEcccC
Q 047332 167 CHNNLYGSIPSSLGNLSNLANFYFNNNSLFD-SIPLVLGNLNSLSTMDLSQNQFSGSIPLSLGNLSNL----GILYLYSN 241 (614)
Q Consensus 167 ~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~-~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L----~~L~L~~~ 241 (614)
++|.+++..+..++.+++|++|++++|.+.+ .+|..++++++|++|++++|.+++..+..+..+++| +++++++|
T Consensus 108 ~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~L~l~~n 187 (570)
T 2z63_A 108 VETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLN 187 (570)
T ss_dssp TTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHHTCTTCCCEEECTTC
T ss_pred cccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHHHccchhccchhhhhcccCCC
Confidence 7766665444456666777777777766655 346666666777777777776665555556655555 66677777
Q ss_pred ccccccchhccCCCCCCEEeccCCcCcc-ccCccccCCCCCCEEecCCCcc------cccCCccCCCCC--CCCEeecCC
Q 047332 242 SFSGSIPSIIGNLKSLLQLDLSENQLIG-SIPLSFGNLSRLTLMSLFNNLL------SGSLPPILGNLK--SLSALGLHI 312 (614)
Q Consensus 242 ~~~~~~~~~l~~l~~L~~L~L~~n~~~~-~~~~~l~~l~~L~~L~L~~~~~------~~~~~~~l~~l~--~L~~L~L~~ 312 (614)
.+.+..+..+... +|++|++++|.... ..+..+..++.++...+....+ .......+..++ .++.+++..
T Consensus 188 ~l~~~~~~~~~~~-~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~ 266 (570)
T 2z63_A 188 PMNFIQPGAFKEI-RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAY 266 (570)
T ss_dssp CCCEECTTTTTTC-EEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEEEEEEEE
T ss_pred CceecCHHHhccC-cceeEecccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhccccccchhhhhhhc
Confidence 6665555555443 56677766653221 2233444555555444332211 111111222222 245566666
Q ss_pred C-cccccCCccccCCCCCCEEEccCCcccccCcccccCCCCCcEEEcccccCCccCCccccCCCCCCEEECcCCCCCCCC
Q 047332 313 N-QLSGVIPSSIGNLSSLRALYLYNNGLCGFVPEEIRYLKSLSELELCKNHLSGVIPHSIGNLTGLLLLNMCENHLSGPI 391 (614)
Q Consensus 313 n-~l~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~ 391 (614)
+ .+.+..+..+..+++|+.|++++|.+.+ +|..+..+ +|++|++++|.+. .+|. ..+++|+.|++++|.+.+..
T Consensus 267 ~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~-l~~~~~~~-~L~~L~l~~n~~~-~l~~--~~l~~L~~L~l~~n~~~~~~ 341 (570)
T 2z63_A 267 LDYYLDDIIDLFNCLTNVSSFSLVSVTIER-VKDFSYNF-GWQHLELVNCKFG-QFPT--LKLKSLKRLTFTSNKGGNAF 341 (570)
T ss_dssp TTEEESCSTTTTGGGTTCSEEEEESCEECS-CCBCCSCC-CCSEEEEESCBCS-SCCB--CBCSSCCEEEEESCBSCCBC
T ss_pred chhhhhhchhhhcCcCcccEEEecCccchh-hhhhhccC-CccEEeeccCccc-ccCc--ccccccCEEeCcCCcccccc
Confidence 5 6666777778888888888888888875 66667777 8888888888887 4454 46778888999888877655
Q ss_pred CccccCCCCCcEEEccCCcCCccc--ccccCCCCCCCEEECcCcccccccCccccCCCCCcEEEcccCcccccCC-ccCC
Q 047332 392 PKSFKNLTSVERVLLNQNNLSGKV--YEAFGDHPNLTFLNLSQNNFCGEISFNWRNFPKLGTFIVSVNNISGSIP-PEIG 468 (614)
Q Consensus 392 ~~~~~~~~~L~~L~l~~n~~~~~~--~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~ 468 (614)
+. ..+++|++|++++|.+.+.. +..+..+++|++|++++|.+.+..+. +..+++|+.|++++|.+.+..+ ..+.
T Consensus 342 ~~--~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~ 418 (570)
T 2z63_A 342 SE--VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSN-FLGLEQLEHLDFQHSNLKQMSEFSVFL 418 (570)
T ss_dssp CC--CBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEE-EETCTTCCEEECTTSEEESCTTSCTTT
T ss_pred cc--ccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCcccccccc-ccccCCCCEEEccCCccccccchhhhh
Confidence 44 67888999999999887554 56677889999999999988765544 8889999999999999887665 4678
Q ss_pred CCCCCCEEeCCCCcCccccchhccCCCCCCEeeccCCccc-cCccccccCCCCCCEEeCCCCcCcccCCccccccCCCCE
Q 047332 469 DSPKLQVLDLSSNSIVGEIPVQLGKLFSLNKLILNLNQLS-GGMPLELGSLTELQYLDLSANKLKSSIPKSIGNLLRLRY 547 (614)
Q Consensus 469 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~-~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~l~~l~~L~~ 547 (614)
.+++|++|++++|.+.+..|..+..+++|++|++++|.+. +.+|..+..+++|++|++++|.+++..|..+..+++|++
T Consensus 419 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 498 (570)
T 2z63_A 419 SLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQV 498 (570)
T ss_dssp TCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCE
T ss_pred cCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCE
Confidence 8899999999999998888888899999999999999987 568888999999999999999999888999999999999
Q ss_pred EeCCCCcCCcCCChhhhcCCCCCeeeCCCCCCCCCCCc
Q 047332 548 LDLSNNQFGHKIPIELEKLIHLSELDLSYNFLGEEIPF 585 (614)
Q Consensus 548 L~l~~n~~~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~ 585 (614)
|++++|++++..|..+.++++|++|++++|++.+..|.
T Consensus 499 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~ 536 (570)
T 2z63_A 499 LNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR 536 (570)
T ss_dssp EECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTT
T ss_pred EeCCCCcCCCCCHHHhhcccCCcEEEecCCcccCCCcc
Confidence 99999999888888889999999999999999887663
No 15
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=2.7e-48 Score=418.18 Aligned_cols=491 Identities=22% Similarity=0.236 Sum_probs=306.0
Q ss_pred CccccceeeCCCCCEEEEEcCCCCCCcccCcccccCCCCCcEEECCCCCCCccCcccccCCCCCCEEeCCCCCCCCCCCc
Q 047332 50 PCAWLGISCNQAGRVISINLSSMALNGTLQEFAFSSFPHLVQLNLSFNIFFGIIPPQIGNLSKLQYLDLGSNQLSGVIPP 129 (614)
Q Consensus 50 ~c~w~~~~c~~~~~v~~l~l~~~~l~~~~~~~~~~~l~~L~~L~Ls~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~ 129 (614)
.|.|.++ |+. ++++++ .+|. .+ .++|++|++++|.+++..|.+|.++++|++|++++|.+++..|.
T Consensus 3 ~C~~~~~-c~~---------~~~~l~-~ip~-~~--~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~ 68 (549)
T 2z81_A 3 SCDASGV-CDG---------RSRSFT-SIPS-GL--TAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGD 68 (549)
T ss_dssp EECTTSE-EEC---------TTSCCS-SCCS-CC--CTTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTT
T ss_pred cCCCCce-EEC---------CCCccc-cccc-cC--CCCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChh
Confidence 4889888 754 233333 3344 23 27899999999999998888999999999999999999988888
Q ss_pred CCCCCCCCCEEEcccccCCCCCCccccCCCCCcEEEeccccCCC-CCCcccCCCCCCcEEEeecCCCcccCC-ccccCCC
Q 047332 130 EIGHLNQLRILYFDVNQLHGSIPPEIGQLSLINVLALCHNNLYG-SIPSSLGNLSNLANFYFNNNSLFDSIP-LVLGNLN 207 (614)
Q Consensus 130 ~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~l~~-~~~~~l~~l~~L~~L~l~~~~~~~~~~-~~l~~l~ 207 (614)
+|+.+++|++|++++|.+.+..|..++++++|++|++++|.+++ ..|..++.+++|++|++++|.+.+.++ ..+..++
T Consensus 69 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~ 148 (549)
T 2z81_A 69 AFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLT 148 (549)
T ss_dssp TTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCC
T ss_pred hccccccCCEEECCCCccCccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhccc
Confidence 99999999999999999997777779999999999999999986 356778899999999999998555544 5788888
Q ss_pred CCCeeeccCccCCccCCccccCCCCCCeEEcccCccccccchh-ccCCCCCCEEeccCCcCcccc--C-ccccCCCCCCE
Q 047332 208 SLSTMDLSQNQFSGSIPLSLGNLSNLGILYLYSNSFSGSIPSI-IGNLKSLLQLDLSENQLIGSI--P-LSFGNLSRLTL 283 (614)
Q Consensus 208 ~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~-l~~l~~L~~L~L~~n~~~~~~--~-~~l~~l~~L~~ 283 (614)
+|++|++++|.+++..|..+..+++|++|++++|.+. .+|.. +..+++|++|++++|.+.+.. + .....+++|+.
T Consensus 149 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~ 227 (549)
T 2z81_A 149 SLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESA-FLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKK 227 (549)
T ss_dssp EEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSBST-THHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCE
T ss_pred ccCeeeccCCcccccChhhhhccccCceEecccCccc-ccchhhHhhcccccEEEccCCccccccccccchhhhhhcccc
Confidence 8889999888888888888888888888888888775 33433 356788888888888776531 1 11234566666
Q ss_pred EecCCCcccccCCc----cCCCCCCCCEeecCCCcccccCCccccCCCCCCEEEccCCcccccCcccccCCCCCcEEEcc
Q 047332 284 MSLFNNLLSGSLPP----ILGNLKSLSALGLHINQLSGVIPSSIGNLSSLRALYLYNNGLCGFVPEEIRYLKSLSELELC 359 (614)
Q Consensus 284 L~L~~~~~~~~~~~----~l~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~ 359 (614)
|++++|.+++..+. .+..+++|+.+++++|.+.+...-. . .....+..+++++.+++.
T Consensus 228 L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~-----~-------------~~~~~~~~l~~L~~L~l~ 289 (549)
T 2z81_A 228 LAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFN-----P-------------SESDVVSELGKVETVTIR 289 (549)
T ss_dssp EEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEEECCSCCC-----C-------------CTTTCCCCCTTCCEEEEE
T ss_pred eeccccccchhHHHHHHHHhhhhcccccccccccccccccccc-----c-------------cchhhhhhhccccccccc
Confidence 66666665543222 2233445555555555444311000 0 000122334455555555
Q ss_pred cccCCcc-----CCccccCCCCCCEEECcCCCCCCCCCccc-cCCCCCcEEEccCCcCCcccc---cccCCCCCCCEEEC
Q 047332 360 KNHLSGV-----IPHSIGNLTGLLLLNMCENHLSGPIPKSF-KNLTSVERVLLNQNNLSGKVY---EAFGDHPNLTFLNL 430 (614)
Q Consensus 360 ~n~~~~~-----~~~~~~~l~~L~~L~ls~n~l~~~~~~~~-~~~~~L~~L~l~~n~~~~~~~---~~~~~~~~L~~L~l 430 (614)
++.+... .+..+...++|+.+++++|.+. .+|..+ ..+++|++|++++|++.+..+ ..+..+++|++|++
T Consensus 290 ~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~-~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~L 368 (549)
T 2z81_A 290 RLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVF-LVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVL 368 (549)
T ss_dssp SCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCC-CCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEEC
T ss_pred ccccchhhhcccchhhhhhcccceEEEeccCccc-cCCHHHHhcCccccEEEccCCccccccccchhhhhccccCcEEEc
Confidence 5443321 1111222345666666666554 233333 455666666666666654432 22455566666666
Q ss_pred cCcccccccC--ccccCCCCCcEEEcccCcccccCCccCCCCCCCCEEeCCCCcCccccchhccCCCCCCEeeccCCccc
Q 047332 431 SQNNFCGEIS--FNWRNFPKLGTFIVSVNNISGSIPPEIGDSPKLQVLDLSSNSIVGEIPVQLGKLFSLNKLILNLNQLS 508 (614)
Q Consensus 431 ~~~~~~~~~~--~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~ 508 (614)
++|.+.+..+ ..+..+++|+.|++++|+++ .+|..+..+++|++|++++|.+. .+|..+ .++|++|++++|.++
T Consensus 369 s~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~~L~~L~Ls~N~l~-~l~~~~--~~~L~~L~Ls~N~l~ 444 (549)
T 2z81_A 369 SQNHLRSMQKTGEILLTLKNLTSLDISRNTFH-PMPDSCQWPEKMRFLNLSSTGIR-VVKTCI--PQTLEVLDVSNNNLD 444 (549)
T ss_dssp TTSCCCCHHHHHHHGGGCTTCCEEECTTCCCC-CCCSCCCCCTTCCEEECTTSCCS-CCCTTS--CTTCSEEECCSSCCS
T ss_pred cCCcccccccchhhhhcCCCCCEEECCCCCCc-cCChhhcccccccEEECCCCCcc-cccchh--cCCceEEECCCCChh
Confidence 6666553321 23445555666666655555 44555555556666666666554 222222 135555555555555
Q ss_pred cCccccccCCCCCCEEeCCCCcCcccCCccccccCCCCEEeCCCCcCCcCCChhhhcCCCCCeeeCCCCCCCCCCC
Q 047332 509 GGMPLELGSLTELQYLDLSANKLKSSIPKSIGNLLRLRYLDLSNNQFGHKIPIELEKLIHLSELDLSYNFLGEEIP 584 (614)
Q Consensus 509 ~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~L~~n~~~~~~p 584 (614)
+.. ..+++|++|++++|.++ .+|. ...+++|+.|++++|++++..|..+..+++|++|++++|++.+..|
T Consensus 445 ~~~----~~l~~L~~L~Ls~N~l~-~ip~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 514 (549)
T 2z81_A 445 SFS----LFLPRLQELYISRNKLK-TLPD-ASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 514 (549)
T ss_dssp CCC----CCCTTCCEEECCSSCCS-SCCC-GGGCTTCCEEECCSSCCCCCCTTGGGGCTTCCEEECCSSCBCCCHH
T ss_pred hhc----ccCChhcEEECCCCccC-cCCC-cccCccCCEEecCCCccCCcCHHHHhcCcccCEEEecCCCccCCCc
Confidence 321 34555555555555555 3443 3445555555555555555555555555555555555555554443
No 16
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=1.8e-48 Score=419.59 Aligned_cols=488 Identities=20% Similarity=0.208 Sum_probs=367.1
Q ss_pred CCCcEEECCCCCCCccCcccccCCCCCCEEeCCCCCCCCCCCcCCCCCCCCCEEEcccccCCCCCCccccCCCCCcEEEe
Q 047332 87 PHLVQLNLSFNIFFGIIPPQIGNLSKLQYLDLGSNQLSGVIPPEIGHLNQLRILYFDVNQLHGSIPPEIGQLSLINVLAL 166 (614)
Q Consensus 87 ~~L~~L~Ls~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l 166 (614)
+...+.+.+++.++. +|..+. ++|++|++++|.+++..|.+|+++++|++|++++|.+.+..|..|.++++|++|++
T Consensus 5 ~~~~~c~~~~~~l~~-ip~~~~--~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L 81 (549)
T 2z81_A 5 DASGVCDGRSRSFTS-IPSGLT--AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDL 81 (549)
T ss_dssp CTTSEEECTTSCCSS-CCSCCC--TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEC
T ss_pred CCCceEECCCCcccc-ccccCC--CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEEC
Confidence 344456777777765 555443 78999999999988777888889999999999999888777788888999999999
Q ss_pred ccccCCCCCCcccCCCCCCcEEEeecCCCcc-cCCccccCCCCCCeeeccCccCCccCC-ccccCCCCCCeEEcccCccc
Q 047332 167 CHNNLYGSIPSSLGNLSNLANFYFNNNSLFD-SIPLVLGNLNSLSTMDLSQNQFSGSIP-LSLGNLSNLGILYLYSNSFS 244 (614)
Q Consensus 167 ~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~-~~~~~l~~l~~L~~L~l~~~~~~~~~~-~~l~~l~~L~~L~L~~~~~~ 244 (614)
++|.+++..+..++.+++|++|++++|.+.+ ..|..++++++|++|++++|.+.+.++ ..+..+++|++|++++|.++
T Consensus 82 s~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~ 161 (549)
T 2z81_A 82 SDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLR 161 (549)
T ss_dssp TTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCC
T ss_pred CCCccCccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCccc
Confidence 9998887777778888888888888888876 355677888888888888887433443 56777888888888888887
Q ss_pred cccchhccCCCCCCEEeccCCcCccccCccccCCCCCCEEecCCCcccccC--C-ccCCCCCCCCEeecCCCcccccCCc
Q 047332 245 GSIPSIIGNLKSLLQLDLSENQLIGSIPLSFGNLSRLTLMSLFNNLLSGSL--P-PILGNLKSLSALGLHINQLSGVIPS 321 (614)
Q Consensus 245 ~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~--~-~~l~~l~~L~~L~L~~n~l~~~~~~ 321 (614)
+..|..+..+++|++|++++|.+.......+..+++|++|++++|.+++.. + .....+++|+.|++++|.+++..+.
T Consensus 162 ~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~ 241 (549)
T 2z81_A 162 NYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFN 241 (549)
T ss_dssp EECTTTTTTCSEEEEEEEECSBSTTHHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHH
T ss_pred ccChhhhhccccCceEecccCcccccchhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccchhHHH
Confidence 777777777888888888877765322222345677777777777766431 1 1122344455555555444432211
Q ss_pred cccCCCCCCEEEccCCcccccCcccccCCCCCcEEEcccccCCcc------CCccccCCCCCCEEECcCCCCCCC-----
Q 047332 322 SIGNLSSLRALYLYNNGLCGFVPEEIRYLKSLSELELCKNHLSGV------IPHSIGNLTGLLLLNMCENHLSGP----- 390 (614)
Q Consensus 322 ~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~------~~~~~~~l~~L~~L~ls~n~l~~~----- 390 (614)
. ++..+..++.|+.+++++|.+.+. ....+..+++++.+++.++.+...
T Consensus 242 ~--------------------l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~ 301 (549)
T 2z81_A 242 E--------------------LLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYD 301 (549)
T ss_dssp H--------------------HHGGGGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCC
T ss_pred H--------------------HHHHhhhhccccccccccccccccccccccchhhhhhhcccccccccccccchhhhccc
Confidence 1 111223445555555555554432 112356678899999998876532
Q ss_pred CCccccCCCCCcEEEccCCcCCccccccc-CCCCCCCEEECcCcccccccC---ccccCCCCCcEEEcccCcccccCC--
Q 047332 391 IPKSFKNLTSVERVLLNQNNLSGKVYEAF-GDHPNLTFLNLSQNNFCGEIS---FNWRNFPKLGTFIVSVNNISGSIP-- 464 (614)
Q Consensus 391 ~~~~~~~~~~L~~L~l~~n~~~~~~~~~~-~~~~~L~~L~l~~~~~~~~~~---~~~~~~~~L~~L~l~~~~~~~~~~-- 464 (614)
++..+....+|+.|++++|.+.. ++..+ ..+++|++|++++|.+.+..+ ..+..+++|+.|++++|++++..+
T Consensus 302 l~~~~~~~~~L~~L~l~~n~l~~-ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~ 380 (549)
T 2z81_A 302 LSTVYSLLEKVKRITVENSKVFL-VPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTG 380 (549)
T ss_dssp CCHHHHHSTTCCEEEEESSCCCC-CCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHH
T ss_pred chhhhhhcccceEEEeccCcccc-CCHHHHhcCccccEEEccCCccccccccchhhhhccccCcEEEccCCcccccccch
Confidence 12223445789999999999874 44444 579999999999999988653 346789999999999999985432
Q ss_pred ccCCCCCCCCEEeCCCCcCccccchhccCCCCCCEeeccCCccccCccccccCCCCCCEEeCCCCcCcccCCccccccCC
Q 047332 465 PEIGDSPKLQVLDLSSNSIVGEIPVQLGKLFSLNKLILNLNQLSGGMPLELGSLTELQYLDLSANKLKSSIPKSIGNLLR 544 (614)
Q Consensus 465 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~l~~l~~ 544 (614)
..+..+++|++|++++|++. .+|..+..+++|++|++++|.+++ +|..+. ++|++|++++|.+++.. ..+++
T Consensus 381 ~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~~L~~L~Ls~N~l~~-l~~~~~--~~L~~L~Ls~N~l~~~~----~~l~~ 452 (549)
T 2z81_A 381 EILLTLKNLTSLDISRNTFH-PMPDSCQWPEKMRFLNLSSTGIRV-VKTCIP--QTLEVLDVSNNNLDSFS----LFLPR 452 (549)
T ss_dssp HHGGGCTTCCEEECTTCCCC-CCCSCCCCCTTCCEEECTTSCCSC-CCTTSC--TTCSEEECCSSCCSCCC----CCCTT
T ss_pred hhhhcCCCCCEEECCCCCCc-cCChhhcccccccEEECCCCCccc-ccchhc--CCceEEECCCCChhhhc----ccCCh
Confidence 45788999999999999998 788888999999999999999984 444432 68999999999998642 57899
Q ss_pred CCEEeCCCCcCCcCCChhhhcCCCCCeeeCCCCCCCCCCCccccCCCCCCeEECcCCCCcccCC
Q 047332 545 LRYLDLSNNQFGHKIPIELEKLIHLSELDLSYNFLGEEIPFQICNVKSLEKLNLCHNNLLGSFQ 608 (614)
Q Consensus 545 L~~L~l~~n~~~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~sL~~L~l~~n~l~~~ip 608 (614)
|++|++++|+++ .+|. ...+++|++|+|++|++.+.+|..|..+++|+.|++++|++.+.+|
T Consensus 453 L~~L~Ls~N~l~-~ip~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 514 (549)
T 2z81_A 453 LQELYISRNKLK-TLPD-ASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 514 (549)
T ss_dssp CCEEECCSSCCS-SCCC-GGGCTTCCEEECCSSCCCCCCTTGGGGCTTCCEEECCSSCBCCCHH
T ss_pred hcEEECCCCccC-cCCC-cccCccCCEEecCCCccCCcCHHHHhcCcccCEEEecCCCccCCCc
Confidence 999999999997 5665 5679999999999999999999889999999999999999999877
No 17
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=3.1e-49 Score=430.14 Aligned_cols=480 Identities=18% Similarity=0.216 Sum_probs=277.1
Q ss_pred CCCcEEECCCCCCCccCcccccCCCCCCEEeCCCCCCC------C------CCCcCCCCCCCCCEEEcccccCCCCCCcc
Q 047332 87 PHLVQLNLSFNIFFGIIPPQIGNLSKLQYLDLGSNQLS------G------VIPPEIGHLNQLRILYFDVNQLHGSIPPE 154 (614)
Q Consensus 87 ~~L~~L~Ls~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~------~------~~~~~l~~l~~L~~L~l~~n~~~~~~~~~ 154 (614)
.+++.|+|+++.+.|.+|.+++++++|++|+|++|.+. + .+|... +.+|+ ++++++.+.+..|..
T Consensus 81 ~~V~~L~L~~~~l~g~lp~~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~--~~~l~-l~l~~~~l~~~~~~~ 157 (636)
T 4eco_A 81 GRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQ--KQKMR-MHYQKTFVDYDPRED 157 (636)
T ss_dssp CCEEEEECTTSCCEEEECGGGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHH--HHHHH-THHHHHHTCCCGGGG
T ss_pred CCEEEEEecCcccCCcCChHHhcCccceEEECcCCccccCCccccccccccCchHHH--HHHHH-hhHHHhhhccCchhh
Confidence 57888999999999999999999999999999998652 1 112111 33344 555555544444433
Q ss_pred ccC-CCCCcEEEeccccCCCCCCcccCCCCCCcEEEee--cCCCcccCCccccCCCCCCeeeccCccCCcc---------
Q 047332 155 IGQ-LSLINVLALCHNNLYGSIPSSLGNLSNLANFYFN--NNSLFDSIPLVLGNLNSLSTMDLSQNQFSGS--------- 222 (614)
Q Consensus 155 ~~~-l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~--~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~--------- 222 (614)
+.. +..+..+++....+.. .....++.+.+. .|.+++ +|..++++++|++|++++|.+++.
T Consensus 158 ~~~~~~~l~~~~l~~~~~~~------~~~~~l~~l~l~~~~n~l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~ 230 (636)
T 4eco_A 158 FSDLIKDCINSDPQQKSIKK------SSRITLKDTQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENE 230 (636)
T ss_dssp SCHHHHHHHHHCTTSCCCCC------CCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCT
T ss_pred HHHHHHHHhhcCcccccccc------ccccchhhhhhccccCCCcc-CCHHHhcccCCCEEECcCCcccccccccccccc
Confidence 331 1111111111111110 011111111111 244444 555555566666666666655543
Q ss_pred --------CCcccc--CCCCCCeEEcccCccccccchhccCCCCCCEEeccCCc-Ccc-ccCccccCC------CCCCEE
Q 047332 223 --------IPLSLG--NLSNLGILYLYSNSFSGSIPSIIGNLKSLLQLDLSENQ-LIG-SIPLSFGNL------SRLTLM 284 (614)
Q Consensus 223 --------~~~~l~--~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~n~-~~~-~~~~~l~~l------~~L~~L 284 (614)
+|..+. ++++|++|++++|.+.+.+|..+.++++|++|++++|. +.+ .+|..++.+ ++|++|
T Consensus 231 ~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L 310 (636)
T 4eco_A 231 NSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQII 310 (636)
T ss_dssp TSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEE
T ss_pred ccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEE
Confidence 555555 55566666666655555555555555566666666655 554 455544443 555555
Q ss_pred ecCCCcccccCCc--cCCCCCCCCEeecCCCcccccCCccccCCCCCCEEEccCCcccccCcccccCCCC-CcEEEcccc
Q 047332 285 SLFNNLLSGSLPP--ILGNLKSLSALGLHINQLSGVIPSSIGNLSSLRALYLYNNGLCGFVPEEIRYLKS-LSELELCKN 361 (614)
Q Consensus 285 ~L~~~~~~~~~~~--~l~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~-L~~L~l~~n 361 (614)
++++|.++ .+|. .+..+++|++|++++|.+++.+| .+..+++|+.|++++|.+. .+|..+..+++ |++|++++|
T Consensus 311 ~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N 387 (636)
T 4eco_A 311 YIGYNNLK-TFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHN 387 (636)
T ss_dssp ECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCSSEEE-ECCTTSEEECTTCCEEECCSS
T ss_pred ECCCCcCC-ccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCCccc-cccHhhhhhcccCcEEEccCC
Confidence 55555555 4444 45555555555555555554555 4555555555555555555 34444444444 555555555
Q ss_pred cCCccCCccccCCC--CCCEEECcCCCCCCCCCccccCCCCCcEEEccCCcCCcccccccCCCCCCCEEECcCccccccc
Q 047332 362 HLSGVIPHSIGNLT--GLLLLNMCENHLSGPIPKSFKNLTSVERVLLNQNNLSGKVYEAFGDHPNLTFLNLSQNNFCGEI 439 (614)
Q Consensus 362 ~~~~~~~~~~~~l~--~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~ 439 (614)
.++ .+|..+..+. +|+.|++++|.+++..|..+..+. .....+++|++|++++|.+.+..
T Consensus 388 ~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~-----------------~~~~~~~~L~~L~Ls~N~l~~lp 449 (636)
T 4eco_A 388 KLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLD-----------------PTPFKGINVSSINLSNNQISKFP 449 (636)
T ss_dssp CCS-SCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTC-----------------SSCCCCCCEEEEECCSSCCCSCC
T ss_pred cCc-ccchhhhhcccCccCEEECcCCcCCCcchhhhcccc-----------------cccccCCCCCEEECcCCccCcCC
Confidence 554 3444443322 444555555544444444443000 00004445555555555555332
Q ss_pred CccccCCCCCcEEEcccCcccccCCccCC--------CCCCCCEEeCCCCcCccccchhcc--CCCCCCEeeccCCcccc
Q 047332 440 SFNWRNFPKLGTFIVSVNNISGSIPPEIG--------DSPKLQVLDLSSNSIVGEIPVQLG--KLFSLNKLILNLNQLSG 509 (614)
Q Consensus 440 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~--------~~~~L~~L~l~~~~~~~~~~~~~~--~~~~L~~L~l~~n~~~~ 509 (614)
+..+..+++|+.|++++|+++ .+|..+. .+++|++|++++|.++ .+|..+. .+++|++|++++|.+++
T Consensus 450 ~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~ 527 (636)
T 4eco_A 450 KELFSTGSPLSSINLMGNMLT-EIPKNSLKDENENFKNTYLLTSIDLRFNKLT-KLSDDFRATTLPYLVGIDLSYNSFSK 527 (636)
T ss_dssp THHHHTTCCCSEEECCSSCCS-BCCSSSSEETTEECTTGGGCCEEECCSSCCC-BCCGGGSTTTCTTCCEEECCSSCCSS
T ss_pred HHHHccCCCCCEEECCCCCCC-CcCHHHhccccccccccCCccEEECcCCcCC-ccChhhhhccCCCcCEEECCCCCCCC
Confidence 233444556666666666555 3333222 2237888888888887 6777666 78888888888888886
Q ss_pred CccccccCCCCCCEEeC------CCCcCcccCCccccccCCCCEEeCCCCcCCcCCChhhhcCCCCCeeeCCCCCCCCCC
Q 047332 510 GMPLELGSLTELQYLDL------SANKLKSSIPKSIGNLLRLRYLDLSNNQFGHKIPIELEKLIHLSELDLSYNFLGEEI 583 (614)
Q Consensus 510 ~~~~~~~~l~~L~~L~l------s~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~L~~n~~~~~~ 583 (614)
+|..+..+++|+.|++ ++|.+.+.+|..+..+++|++|++++|++ +.+|..+. ++|++|+|++|++....
T Consensus 528 -ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l-~~ip~~~~--~~L~~L~Ls~N~l~~~~ 603 (636)
T 4eco_A 528 -FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDI-RKVNEKIT--PNISVLDIKDNPNISID 603 (636)
T ss_dssp -CCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC--TTCCEEECCSCTTCEEE
T ss_pred -cChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCCcC-CccCHhHh--CcCCEEECcCCCCcccc
Confidence 7777888888888888 56788889999999999999999999999 77787665 79999999999776543
Q ss_pred Cccc-----cC---CCCCCeEECcCCCC
Q 047332 584 PFQI-----CN---VKSLEKLNLCHNNL 603 (614)
Q Consensus 584 p~~l-----~~---l~sL~~L~l~~n~l 603 (614)
...+ .. +...+..++.+|+.
T Consensus 604 ~~~~~~~~~~~~~~l~~~~~~~i~~C~~ 631 (636)
T 4eco_A 604 LSYVCPYIEAGMYMLFYDKTQDIRGCDA 631 (636)
T ss_dssp CTTTHHHHHTTCCEEECCTTSEEESCGG
T ss_pred HHhcchhhhcccceeecCCccccCCCcc
Confidence 2222 22 22335556777764
No 18
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=100.00 E-value=4.8e-45 Score=400.37 Aligned_cols=511 Identities=22% Similarity=0.192 Sum_probs=404.2
Q ss_pred CCCcEEECCCCCCCccCcccccCCCCCCEEeCCCCCCCCCCCcCCCCCCCCCEEEcccccCCCCCCccccCCCCCcEEEe
Q 047332 87 PHLVQLNLSFNIFFGIIPPQIGNLSKLQYLDLGSNQLSGVIPPEIGHLNQLRILYFDVNQLHGSIPPEIGQLSLINVLAL 166 (614)
Q Consensus 87 ~~L~~L~Ls~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l 166 (614)
+++++|+|++|.|++..+.+|.++++|++|+|++|.+++..+.+|.++++|++|+|++|++++..+..|.++++|++|++
T Consensus 52 ~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~L 131 (635)
T 4g8a_A 52 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA 131 (635)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEEC
T ss_pred cCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEEC
Confidence 47899999999999888888999999999999999999777778999999999999999988666677899999999999
Q ss_pred ccccCCCCCCcccCCCCCCcEEEeecCCCcc-cCCccccCCCCCCeeeccCccCCccCCccccCCCCC----CeEEcccC
Q 047332 167 CHNNLYGSIPSSLGNLSNLANFYFNNNSLFD-SIPLVLGNLNSLSTMDLSQNQFSGSIPLSLGNLSNL----GILYLYSN 241 (614)
Q Consensus 167 ~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~-~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L----~~L~L~~~ 241 (614)
++|++++..+..++++++|++|++++|.+.. ..|..++.+++|++|++++|.+++..+..+..+.++ ..++++.|
T Consensus 132 s~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~~~~~~ls~n 211 (635)
T 4g8a_A 132 VETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLN 211 (635)
T ss_dssp TTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCCEEECTTC
T ss_pred CCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccccccccccchhhhhhhhhhhhcccC
Confidence 9999987777778999999999999998876 356778889999999999999987777777655443 46788888
Q ss_pred ccccccchhccCCCCCCEEeccCCcCcc-ccCccccCCCCCCEEecCCCcc------cccCCccCCCCCCCCEeecCCCc
Q 047332 242 SFSGSIPSIIGNLKSLLQLDLSENQLIG-SIPLSFGNLSRLTLMSLFNNLL------SGSLPPILGNLKSLSALGLHINQ 314 (614)
Q Consensus 242 ~~~~~~~~~l~~l~~L~~L~L~~n~~~~-~~~~~l~~l~~L~~L~L~~~~~------~~~~~~~l~~l~~L~~L~L~~n~ 314 (614)
.+....+. ......++.+++.+|.... ..+..+..+..++...+..+.. .......+.....+....+..+.
T Consensus 212 ~l~~i~~~-~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~l~~~~ 290 (635)
T 4g8a_A 212 PMNFIQPG-AFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAY 290 (635)
T ss_dssp CCCEECTT-TTTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSEEEEEEEEC
T ss_pred cccccCcc-cccchhhhhhhhhcccccccccchhhcCCcccccccccccccccccccccccccccccccchhhhhhhhhh
Confidence 88744443 3344466778888775442 2233456667776665543322 11222233334445444443332
Q ss_pred cc---ccCCccccCCCCCCEEEccCCcccccCcccccCCCCCcEEEcccccCCccCCccccCCCCCCEEECcCCCCCCCC
Q 047332 315 LS---GVIPSSIGNLSSLRALYLYNNGLCGFVPEEIRYLKSLSELELCKNHLSGVIPHSIGNLTGLLLLNMCENHLSGPI 391 (614)
Q Consensus 315 l~---~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~ 391 (614)
.. ......+....+++.+.+.++.+.... .+.....++.|++.+|.+.+..+. .+..|+.+++..|.....
T Consensus 291 ~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~~~~---~l~~L~~l~l~~n~~~~~- 364 (635)
T 4g8a_A 291 LDYYLDGIIDLFNCLTNVSSFSLVSVTIERVK--DFSYNFGWQHLELVNCKFGQFPTL---KLKSLKRLTFTSNKGGNA- 364 (635)
T ss_dssp CCSCEEECTTTTGGGTTCSEEEEESCEEEECG--GGGSCCCCSEEEEESCEESSCCCC---BCTTCCEEEEESCCSCCB-
T ss_pred hcccccchhhhhhhhccccccccccccccccc--ccccchhhhhhhcccccccCcCcc---cchhhhhcccccccCCCC-
Confidence 21 223345566788999999988877653 355677899999999988755433 456788999998887643
Q ss_pred CccccCCCCCcEEEccCCcCCc--ccccccCCCCCCCEEECcCcccccccCccccCCCCCcEEEcccCcccccCC-ccCC
Q 047332 392 PKSFKNLTSVERVLLNQNNLSG--KVYEAFGDHPNLTFLNLSQNNFCGEISFNWRNFPKLGTFIVSVNNISGSIP-PEIG 468 (614)
Q Consensus 392 ~~~~~~~~~L~~L~l~~n~~~~--~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~ 468 (614)
.....+++|+.++++.|.+.. ..+..+..+.+|+++++..+.... .+..+..+++|+.+++..++.....+ ..+.
T Consensus 365 -~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~-~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~ 442 (635)
T 4g8a_A 365 -FSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFL 442 (635)
T ss_dssp -CCCCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEE-ECSCCTTCTTCCEEECTTSEEESTTSSCTTT
T ss_pred -cccccccccccchhhccccccccccccchhhhhhhhhhhcccccccc-ccccccccccccchhhhhccccccccccccc
Confidence 344578999999999998763 334455678899999999988764 34567789999999999988776544 4567
Q ss_pred CCCCCCEEeCCCCcCccccchhccCCCCCCEeeccCCccc-cCccccccCCCCCCEEeCCCCcCcccCCccccccCCCCE
Q 047332 469 DSPKLQVLDLSSNSIVGEIPVQLGKLFSLNKLILNLNQLS-GGMPLELGSLTELQYLDLSANKLKSSIPKSIGNLLRLRY 547 (614)
Q Consensus 469 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~-~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~l~~l~~L~~ 547 (614)
.+++++.++++.|.+.+..+..+..++.++.|++++|.+. +..|..|..+++|++|++++|++.+..|..|..+++|++
T Consensus 443 ~l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~ 522 (635)
T 4g8a_A 443 SLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQV 522 (635)
T ss_dssp TCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCE
T ss_pred cccccccccccccccccccccccccchhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHHcCCCCCCE
Confidence 8999999999999999888889999999999999999754 457888999999999999999999999999999999999
Q ss_pred EeCCCCcCCcCCChhhhcCCCCCeeeCCCCCCCCCCCccccCC-CCCCeEECcCCCCccc
Q 047332 548 LDLSNNQFGHKIPIELEKLIHLSELDLSYNFLGEEIPFQICNV-KSLEKLNLCHNNLLGS 606 (614)
Q Consensus 548 L~l~~n~~~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l-~sL~~L~l~~n~l~~~ 606 (614)
|+|++|++++..|..|.++++|++|+|++|++.+..|..|..+ ++|++|++++||+...
T Consensus 523 L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~C~ 582 (635)
T 4g8a_A 523 LNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACT 582 (635)
T ss_dssp EECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCCBCCS
T ss_pred EECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCCccc
Confidence 9999999999999999999999999999999999999999887 6899999999999865
No 19
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=1.2e-46 Score=402.37 Aligned_cols=453 Identities=19% Similarity=0.185 Sum_probs=303.7
Q ss_pred CEEeCCCCCCCCCCCcCCCCCCCCCEEEcccccCCCCCCccccCCCCCcEEEeccccCCCCCCcccCCCCCCcEEEeecC
Q 047332 114 QYLDLGSNQLSGVIPPEIGHLNQLRILYFDVNQLHGSIPPEIGQLSLINVLALCHNNLYGSIPSSLGNLSNLANFYFNNN 193 (614)
Q Consensus 114 ~~L~Ls~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~ 193 (614)
++|++++|.++ .+|..+. ++|++|++++|.+.+..|..+.++++|++|++++|.+++..|..+..+++|++|++++|
T Consensus 3 ~~l~ls~n~l~-~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N 79 (520)
T 2z7x_B 3 FLVDRSKNGLI-HVPKDLS--QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHN 79 (520)
T ss_dssp CEEECTTSCCS-SCCCSCC--TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSS
T ss_pred ceEecCCCCcc-ccccccc--ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCC
Confidence 68999999999 6787775 89999999999999777788999999999999999999888889999999999999999
Q ss_pred CCcccCCccccCCCCCCeeeccCccCCc-cCCccccCCCCCCeEEcccCccccccchhccCCCCC--CEEeccCCcC--c
Q 047332 194 SLFDSIPLVLGNLNSLSTMDLSQNQFSG-SIPLSLGNLSNLGILYLYSNSFSGSIPSIIGNLKSL--LQLDLSENQL--I 268 (614)
Q Consensus 194 ~~~~~~~~~l~~l~~L~~L~l~~~~~~~-~~~~~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L--~~L~L~~n~~--~ 268 (614)
.+.. +|.. .+++|++|++++|.+++ ..|..++.+++|++|++++|.+++ ..+..+++| ++|++++|.+ .
T Consensus 80 ~l~~-lp~~--~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~---~~~~~l~~L~L~~L~l~~n~l~~~ 153 (520)
T 2z7x_B 80 KLVK-ISCH--PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK---SSVLPIAHLNISKVLLVLGETYGE 153 (520)
T ss_dssp CCCE-EECC--CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG---GGGGGGTTSCEEEEEEEECTTTTS
T ss_pred ceee-cCcc--ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccch---hhccccccceeeEEEeeccccccc
Confidence 9874 5544 78999999999999986 467889999999999999998875 345666777 9999999988 6
Q ss_pred cccCccccCCC-CCCEEecCCCcccccCCc-cCCCCCCCCEeecCCCc-------ccccCCccccCCCCCCEEEccCCcc
Q 047332 269 GSIPLSFGNLS-RLTLMSLFNNLLSGSLPP-ILGNLKSLSALGLHINQ-------LSGVIPSSIGNLSSLRALYLYNNGL 339 (614)
Q Consensus 269 ~~~~~~l~~l~-~L~~L~L~~~~~~~~~~~-~l~~l~~L~~L~L~~n~-------l~~~~~~~l~~~~~L~~L~l~~n~~ 339 (614)
+..|..+..+. ....+++++|.+.+.++. .+..+++|+.+++++|. +.+.++ .+..+++|+.|++++|.+
T Consensus 154 ~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~-~l~~l~~L~~L~l~~~~l 232 (520)
T 2z7x_B 154 KEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILA-KLQTNPKLSNLTLNNIET 232 (520)
T ss_dssp SCCTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHH-GGGGCTTCCEEEEEEEEE
T ss_pred ccccccccccccceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccceeecchh-hhccccchhhcccccccc
Confidence 66776666654 233567777777655443 45677888888888776 554444 567777888888877766
Q ss_pred cccCccccc---CCCCCcEEEcccccCCccCCccc-----cCCCCCCEEECcCCCCCCCCC-ccccCC---CCCcEEEcc
Q 047332 340 CGFVPEEIR---YLKSLSELELCKNHLSGVIPHSI-----GNLTGLLLLNMCENHLSGPIP-KSFKNL---TSVERVLLN 407 (614)
Q Consensus 340 ~~~~~~~~~---~~~~L~~L~l~~n~~~~~~~~~~-----~~l~~L~~L~ls~n~l~~~~~-~~~~~~---~~L~~L~l~ 407 (614)
.+..+..+. ..++|++|++++|.+++.+|..+ ..+++|+.+++++|.+ .+| ..+..+ .+|+.|+++
T Consensus 233 ~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~--~~p~~~~~~~~~~~~L~~L~l~ 310 (520)
T 2z7x_B 233 TWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF--GFPQSYIYEIFSNMNIKNFTVS 310 (520)
T ss_dssp EHHHHHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC--CSCTHHHHHHHHTCCCSEEEEE
T ss_pred CHHHHHHHHHHhhhCcccEEEeecccccCccccchhhcccccCceeEeccccccce--ecchhhhhcccccCceeEEEcC
Confidence 653222111 13467777777777776666665 5555566666655555 222 222222 344555555
Q ss_pred CCcCCcccccccCCCCCCCEEECcCcccccccCccccCCCCCcEEEcccCcccccCCccCCCCCCCCEEeCCCCcCcc--
Q 047332 408 QNNLSGKVYEAFGDHPNLTFLNLSQNNFCGEISFNWRNFPKLGTFIVSVNNISGSIPPEIGDSPKLQVLDLSSNSIVG-- 485 (614)
Q Consensus 408 ~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-- 485 (614)
+|.+..... ...+++|++|++++|++++.+|..+..+++|++|++++|.+.+
T Consensus 311 ~n~l~~~~~--------------------------~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~ 364 (520)
T 2z7x_B 311 GTRMVHMLC--------------------------PSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELS 364 (520)
T ss_dssp SSCCCCCCC--------------------------CSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHH
T ss_pred CCccccccc--------------------------hhhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccc
Confidence 544432110 1345555555555555555555555556666666666666654
Q ss_pred ccchhccCCCCCCEeeccCCccccCccc-cccCCCCCCEEeCCCCcCcccCCccccccCCCCEEeCCCCcCCcCCChhhh
Q 047332 486 EIPVQLGKLFSLNKLILNLNQLSGGMPL-ELGSLTELQYLDLSANKLKSSIPKSIGNLLRLRYLDLSNNQFGHKIPIELE 564 (614)
Q Consensus 486 ~~~~~~~~~~~L~~L~l~~n~~~~~~~~-~~~~l~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~l~ 564 (614)
.+|..+..+++|++|++++|.+.+.+|. .+..+++|++|++++|.+++..|..+. ++|+.|++++|+++ .+|..+.
T Consensus 365 ~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~-~ip~~~~ 441 (520)
T 2z7x_B 365 KIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIK-SIPKQVV 441 (520)
T ss_dssp HHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSCCCGGGGGSCC--TTCCEEECCSSCCC-CCCGGGG
T ss_pred cchHHHhhCCCCCEEECCCCcCCcccccchhccCccCCEEECcCCCCCcchhhhhc--ccCCEEECCCCccc-ccchhhh
Confidence 3445556666666666666666653333 355566666666666666555554443 56666666666664 5555555
Q ss_pred cCCCCCeeeCCCCCCCCCCCccccCCCCCCeEECcCCCCcccC
Q 047332 565 KLIHLSELDLSYNFLGEEIPFQICNVKSLEKLNLCHNNLLGSF 607 (614)
Q Consensus 565 ~l~~L~~L~L~~n~~~~~~p~~l~~l~sL~~L~l~~n~l~~~i 607 (614)
.+++|++|++++|++.+..+..|..+++|++|++++|++.+..
T Consensus 442 ~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~~~c~c 484 (520)
T 2z7x_B 442 KLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSC 484 (520)
T ss_dssp GCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCCCH
T ss_pred cCCCCCEEECCCCcCCccCHHHhccCCcccEEECcCCCCcccC
Confidence 6666666666666665433333566666666666666666543
No 20
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=3.2e-46 Score=399.08 Aligned_cols=452 Identities=21% Similarity=0.205 Sum_probs=352.7
Q ss_pred cEEECCCCCCCccCcccccCCCCCCEEeCCCCCCCCCCCcCCCCCCCCCEEEcccccCCCCCCccccCCCCCcEEEeccc
Q 047332 90 VQLNLSFNIFFGIIPPQIGNLSKLQYLDLGSNQLSGVIPPEIGHLNQLRILYFDVNQLHGSIPPEIGQLSLINVLALCHN 169 (614)
Q Consensus 90 ~~L~Ls~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~ 169 (614)
++|++++|.++. +|..+. ++|++|++++|.+++..|..|.++++|++|++++|.+++..|..|.++++|++|++++|
T Consensus 3 ~~l~ls~n~l~~-ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N 79 (520)
T 2z7x_B 3 FLVDRSKNGLIH-VPKDLS--QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHN 79 (520)
T ss_dssp CEEECTTSCCSS-CCCSCC--TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSS
T ss_pred ceEecCCCCccc-cccccc--ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCC
Confidence 689999999985 677665 89999999999999877789999999999999999999888899999999999999999
Q ss_pred cCCCCCCcccCCCCCCcEEEeecCCCcc-cCCccccCCCCCCeeeccCccCCccCCccccCCCCC--CeEEcccCcc--c
Q 047332 170 NLYGSIPSSLGNLSNLANFYFNNNSLFD-SIPLVLGNLNSLSTMDLSQNQFSGSIPLSLGNLSNL--GILYLYSNSF--S 244 (614)
Q Consensus 170 ~l~~~~~~~l~~l~~L~~L~l~~~~~~~-~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L--~~L~L~~~~~--~ 244 (614)
.++ .+|.. .+++|++|++++|.+.+ .+|..++.+++|++|++++|.+++ ..+..+++| ++|++++|.+ .
T Consensus 80 ~l~-~lp~~--~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~---~~~~~l~~L~L~~L~l~~n~l~~~ 153 (520)
T 2z7x_B 80 KLV-KISCH--PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK---SSVLPIAHLNISKVLLVLGETYGE 153 (520)
T ss_dssp CCC-EEECC--CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG---GGGGGGTTSCEEEEEEEECTTTTS
T ss_pred cee-ecCcc--ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccch---hhccccccceeeEEEeeccccccc
Confidence 998 56665 89999999999999987 478899999999999999999985 456677778 9999999999 7
Q ss_pred cccchhccCCC-CCCEEeccCCcCccccCc-cccCCCCCCEEecCCCc-------ccccCCccCCCCCCCCEeecCCCcc
Q 047332 245 GSIPSIIGNLK-SLLQLDLSENQLIGSIPL-SFGNLSRLTLMSLFNNL-------LSGSLPPILGNLKSLSALGLHINQL 315 (614)
Q Consensus 245 ~~~~~~l~~l~-~L~~L~L~~n~~~~~~~~-~l~~l~~L~~L~L~~~~-------~~~~~~~~l~~l~~L~~L~L~~n~l 315 (614)
+..|..+..+. ....+++++|.+.+.++. .+..+++|+.+++++|. +.+.++ .+..+++|+.|+++++.+
T Consensus 154 ~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~-~l~~l~~L~~L~l~~~~l 232 (520)
T 2z7x_B 154 KEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILA-KLQTNPKLSNLTLNNIET 232 (520)
T ss_dssp SCCTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHH-GGGGCTTCCEEEEEEEEE
T ss_pred ccccccccccccceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccceeecchh-hhccccchhhcccccccc
Confidence 77787776655 234678888887765544 56789999999999987 666665 688899999999999988
Q ss_pred cccCCcccc---CCCCCCEEEccCCcccccCcccc-----cCCCCCcEEEcccccCCccCC-ccccCC---CCCCEEECc
Q 047332 316 SGVIPSSIG---NLSSLRALYLYNNGLCGFVPEEI-----RYLKSLSELELCKNHLSGVIP-HSIGNL---TGLLLLNMC 383 (614)
Q Consensus 316 ~~~~~~~l~---~~~~L~~L~l~~n~~~~~~~~~~-----~~~~~L~~L~l~~n~~~~~~~-~~~~~l---~~L~~L~ls 383 (614)
.+..+..+. ..++|+.|++++|.+.+.+|..+ ..++.|+.+++++|.+ .+| ..+..+ .+|+.|+++
T Consensus 233 ~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~--~~p~~~~~~~~~~~~L~~L~l~ 310 (520)
T 2z7x_B 233 TWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF--GFPQSYIYEIFSNMNIKNFTVS 310 (520)
T ss_dssp EHHHHHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC--CSCTHHHHHHHHTCCCSEEEEE
T ss_pred CHHHHHHHHHHhhhCcccEEEeecccccCccccchhhcccccCceeEeccccccce--ecchhhhhcccccCceeEEEcC
Confidence 764322211 24699999999999998888888 8899999999999998 344 444443 679999999
Q ss_pred CCCCCCCCCccccCCCCCcEEEccCCcCCcccccccCCCCCCCEEECcCccccc--ccCccccCCCCCcEEEcccCcccc
Q 047332 384 ENHLSGPIPKSFKNLTSVERVLLNQNNLSGKVYEAFGDHPNLTFLNLSQNNFCG--EISFNWRNFPKLGTFIVSVNNISG 461 (614)
Q Consensus 384 ~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~--~~~~~~~~~~~L~~L~l~~~~~~~ 461 (614)
+|.+.... .+..+++|++|++++|++++..+..+..+++|++|++++|.+.+ .++..+..+++|+.|++++|.+++
T Consensus 311 ~n~l~~~~--~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~ 388 (520)
T 2z7x_B 311 GTRMVHML--CPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSY 388 (520)
T ss_dssp SSCCCCCC--CCSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBC
T ss_pred CCcccccc--chhhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCc
Confidence 99987542 23678999999999999998888888889999999999998876 444556677777777777777776
Q ss_pred cCCcc-CCCCCCCCEEeCCCCcCccccchhccCCCCCCEeeccCCccccCccccccCCCCCCEEeCCCCcCcccCCcc-c
Q 047332 462 SIPPE-IGDSPKLQVLDLSSNSIVGEIPVQLGKLFSLNKLILNLNQLSGGMPLELGSLTELQYLDLSANKLKSSIPKS-I 539 (614)
Q Consensus 462 ~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~-l 539 (614)
.+|.. +..+++|++|++++|++++..|..+. ++|++|++++|.++ .+|..+..+++|++|++++|.+++ +|.. +
T Consensus 389 ~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~-l~~~~~ 464 (520)
T 2z7x_B 389 DEKKGDCSWTKSLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLKS-VPDGIF 464 (520)
T ss_dssp CGGGCSCCCCTTCCEEECCSSCCCGGGGGSCC--TTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CCTTTT
T ss_pred ccccchhccCccCCEEECcCCCCCcchhhhhc--ccCCEEECCCCccc-ccchhhhcCCCCCEEECCCCcCCc-cCHHHh
Confidence 45543 55666777777777776655554443 56666666666666 455555566666666666666663 3433 5
Q ss_pred cccCCCCEEeCCCCcCCcCC
Q 047332 540 GNLLRLRYLDLSNNQFGHKI 559 (614)
Q Consensus 540 ~~l~~L~~L~l~~n~~~~~~ 559 (614)
..+++|++|++++|++.+..
T Consensus 465 ~~l~~L~~L~l~~N~~~c~c 484 (520)
T 2z7x_B 465 DRLTSLQKIWLHTNPWDCSC 484 (520)
T ss_dssp TTCTTCCEEECCSSCBCCCH
T ss_pred ccCCcccEEECcCCCCcccC
Confidence 66666666666666665543
No 21
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=7e-46 Score=409.79 Aligned_cols=464 Identities=18% Similarity=0.211 Sum_probs=367.4
Q ss_pred CCCcEEECCCCCCCccCcccccCCCCCCEEeC-CCCCCCCCCCcCCCCC-CCCCE-----EEc----------ccccCCC
Q 047332 87 PHLVQLNLSFNIFFGIIPPQIGNLSKLQYLDL-GSNQLSGVIPPEIGHL-NQLRI-----LYF----------DVNQLHG 149 (614)
Q Consensus 87 ~~L~~L~Ls~~~~~~~~~~~l~~l~~L~~L~L-s~n~l~~~~~~~l~~l-~~L~~-----L~l----------~~n~~~~ 149 (614)
.+++.|+|+++.+.|.+|.+|+++++|++|+| ++|.++|..|...... ..+.. +.. ....+.+
T Consensus 323 ~~V~~L~Ls~~~L~G~ip~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~ 402 (876)
T 4ecn_A 323 GRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSD 402 (876)
T ss_dssp SCEEEEECTTTCCEEEECGGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCH
T ss_pred CCEEEEECccCCCCCcCchHHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhhH
Confidence 57888999999999999999999999999999 8887776644221111 00000 000 0000000
Q ss_pred -----------CCCccccCCCCCcEEEecc--ccCCCCCCcccCCCCCCcEEEeecCCCcc-----------------cC
Q 047332 150 -----------SIPPEIGQLSLINVLALCH--NNLYGSIPSSLGNLSNLANFYFNNNSLFD-----------------SI 199 (614)
Q Consensus 150 -----------~~~~~~~~l~~L~~L~l~~--~~l~~~~~~~l~~l~~L~~L~l~~~~~~~-----------------~~ 199 (614)
..+........++.+.+.. |.+++ +|..++++++|++|++++|.+.+ .+
T Consensus 403 l~~~~l~~~~~~~~i~~~~~l~l~~l~l~~~~N~L~~-IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~i 481 (876)
T 4ecn_A 403 LLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITF-ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYE 481 (876)
T ss_dssp HHHHHHHTCTTSCCCCCCCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHT
T ss_pred HHHHHhhhCccccccccccccchhhceeccccCcccc-hhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccC
Confidence 0011112223344444443 77877 89999999999999999999998 38
Q ss_pred Ccccc--CCCCCCeeeccCccCCccCCccccCCCCCCeEEcccCc-ccc-ccchhccCCC-------CCCEEeccCCcCc
Q 047332 200 PLVLG--NLNSLSTMDLSQNQFSGSIPLSLGNLSNLGILYLYSNS-FSG-SIPSIIGNLK-------SLLQLDLSENQLI 268 (614)
Q Consensus 200 ~~~l~--~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~-~~~-~~~~~l~~l~-------~L~~L~L~~n~~~ 268 (614)
|..++ ++++|++|++++|.+.+.+|..+.++++|++|++++|. +++ .+|..+..++ +|++|++++|.+.
T Consensus 482 P~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~ 561 (876)
T 4ecn_A 482 NEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE 561 (876)
T ss_dssp TSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC
T ss_pred ChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC
Confidence 88887 99999999999999999999999999999999999998 888 7887666554 9999999999998
Q ss_pred cccCc--cccCCCCCCEEecCCCcccccCCccCCCCCCCCEeecCCCcccccCCccccCCCC-CCEEEccCCcccccCcc
Q 047332 269 GSIPL--SFGNLSRLTLMSLFNNLLSGSLPPILGNLKSLSALGLHINQLSGVIPSSIGNLSS-LRALYLYNNGLCGFVPE 345 (614)
Q Consensus 269 ~~~~~--~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~~~~-L~~L~l~~n~~~~~~~~ 345 (614)
.+|. .+..+++|+.|++++|.++ .+| .+..+++|+.|++++|.+. .+|..+..+++ |+.|++++|.+. .+|.
T Consensus 562 -~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp-~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~-~lp~ 636 (876)
T 4ecn_A 562 -EFPASASLQKMVKLGLLDCVHNKVR-HLE-AFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK-YIPN 636 (876)
T ss_dssp -BCCCHHHHTTCTTCCEEECTTSCCC-BCC-CCCTTSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCC-SCCS
T ss_pred -ccCChhhhhcCCCCCEEECCCCCcc-cch-hhcCCCcceEEECcCCccc-cchHHHhhccccCCEEECcCCCCC-cCch
Confidence 8888 8999999999999999999 778 7999999999999999999 88888999999 999999999998 5777
Q ss_pred cccCCCC--CcEEEcccccCCccCCccc---c--CCCCCCEEECcCCCCCCCCCccccCCCCCcEEEccCCcCCcccccc
Q 047332 346 EIRYLKS--LSELELCKNHLSGVIPHSI---G--NLTGLLLLNMCENHLSGPIPKSFKNLTSVERVLLNQNNLSGKVYEA 418 (614)
Q Consensus 346 ~~~~~~~--L~~L~l~~n~~~~~~~~~~---~--~l~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~ 418 (614)
.+...+. |+.|++++|.+++.+|... . .+++|+.|++++|.++......+..+++|+.|++++|.+.......
T Consensus 637 ~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~~ip~~~ 716 (876)
T 4ecn_A 637 IFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENS 716 (876)
T ss_dssp CCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCSCCCTTS
T ss_pred hhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCCcCCccChHH
Confidence 7766654 9999999999998766432 2 3458999999999999544445568999999999999998443333
Q ss_pred cCC-------CCCCCEEECcCcccccccCcccc--CCCCCcEEEcccCcccccCCccCCCCCCCCEEeCCCCcCccccch
Q 047332 419 FGD-------HPNLTFLNLSQNNFCGEISFNWR--NFPKLGTFIVSVNNISGSIPPEIGDSPKLQVLDLSSNSIVGEIPV 489 (614)
Q Consensus 419 ~~~-------~~~L~~L~l~~~~~~~~~~~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~ 489 (614)
+.. +++|+.|++++|.+. .+|..+. .+++|+.|++++|++++ +|..+..+++|+.|++++|+
T Consensus 717 ~~~~~~~l~nl~~L~~L~Ls~N~L~-~lp~~l~~~~l~~L~~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~N~------- 787 (876)
T 4ecn_A 717 LKPKDGNYKNTYLLTTIDLRFNKLT-SLSDDFRATTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQR------- 787 (876)
T ss_dssp SSCTTSCCTTGGGCCEEECCSSCCC-CCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCTTCCEEECCCCB-------
T ss_pred hccccccccccCCccEEECCCCCCc-cchHHhhhccCCCcCEEEeCCCCCCc-cchhhhcCCCCCEEECCCCC-------
Confidence 332 239999999999998 6777776 89999999999999987 78888889999999998876
Q ss_pred hccCCCCCCEeeccCCccccCccccccCCCCCCEEeCCCCcCcccCCccccccCCCCEEeCCCCcCCcCCChhhhcCCCC
Q 047332 490 QLGKLFSLNKLILNLNQLSGGMPLELGSLTELQYLDLSANKLKSSIPKSIGNLLRLRYLDLSNNQFGHKIPIELEKLIHL 569 (614)
Q Consensus 490 ~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L 569 (614)
++++|.+.+.+|..+..+++|+.|++++|.+ +.+|..+. ++|+.|+|++|++....+..+.....+
T Consensus 788 -----------~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L-~~Ip~~l~--~~L~~LdLs~N~l~~i~~~~~~~~~~~ 853 (876)
T 4ecn_A 788 -----------DAEGNRILRQWPTGITTCPSLIQLQIGSNDI-RKVDEKLT--PQLYILDIADNPNISIDVTSVCPYIEA 853 (876)
T ss_dssp -----------CTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC--SSSCEEECCSCTTCEEECGGGHHHHHT
T ss_pred -----------CcccccccccChHHHhcCCCCCEEECCCCCC-CccCHhhc--CCCCEEECCCCCCCccChHHccccccc
Confidence 5677888888888888888888999988888 57777655 588999999998877666666655566
Q ss_pred CeeeCCCCCC
Q 047332 570 SELDLSYNFL 579 (614)
Q Consensus 570 ~~L~L~~n~~ 579 (614)
..+.|.+|+.
T Consensus 854 ~~~~L~~n~~ 863 (876)
T 4ecn_A 854 GMYVLLYDKT 863 (876)
T ss_dssp TCCEEECCTT
T ss_pred hheeecCCCc
Confidence 6677776655
No 22
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=100.00 E-value=2.6e-43 Score=386.62 Aligned_cols=508 Identities=23% Similarity=0.182 Sum_probs=339.5
Q ss_pred CEEEEEcCCCCCCcccCcccccCCCCCcEEECCCCCCCccCcccccCCCCCCEEeCCCCCCCCCCCcCCCCCCCCCEEEc
Q 047332 63 RVISINLSSMALNGTLQEFAFSSFPHLVQLNLSFNIFFGIIPPQIGNLSKLQYLDLGSNQLSGVIPPEIGHLNQLRILYF 142 (614)
Q Consensus 63 ~v~~l~l~~~~l~~~~~~~~~~~l~~L~~L~Ls~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~l 142 (614)
.+++|+|+++.+++..+. +|.++++|++|+|++|.+++..+.+|.++++|++|+|++|++++..+..|.++++|++|++
T Consensus 53 ~~~~LdLs~N~i~~l~~~-~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~L 131 (635)
T 4g8a_A 53 STKNLDLSFNPLRHLGSY-SFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA 131 (635)
T ss_dssp TCCEEECTTSCCCEECTT-TTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEEC
T ss_pred CCCEEEeeCCCCCCCCHH-HHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEEC
Confidence 689999999999865545 8999999999999999999988889999999999999999999776678999999999999
Q ss_pred ccccCCCCCCccccCCCCCcEEEeccccCCC-CCCcccCCCCCCcEEEeecCCCcccCCccccCCCCC----CeeeccCc
Q 047332 143 DVNQLHGSIPPEIGQLSLINVLALCHNNLYG-SIPSSLGNLSNLANFYFNNNSLFDSIPLVLGNLNSL----STMDLSQN 217 (614)
Q Consensus 143 ~~n~~~~~~~~~~~~l~~L~~L~l~~~~l~~-~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L----~~L~l~~~ 217 (614)
++|++++..+..|+++++|++|++++|.+++ ..|..++.+++|++|++++|.+.+..+..+..+.++ ..++++.|
T Consensus 132 s~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~~~~~~ls~n 211 (635)
T 4g8a_A 132 VETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLN 211 (635)
T ss_dssp TTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCCEEECTTC
T ss_pred CCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccccccccccchhhhhhhhhhhhcccC
Confidence 9999997766789999999999999999976 467888999999999999999998877777665544 46788888
Q ss_pred cCCccCCccccCCCCCCeEEcccCcccc-ccchhccCCCCCCEEeccCCcC------ccccCccccCCCCCCEEecCCCc
Q 047332 218 QFSGSIPLSLGNLSNLGILYLYSNSFSG-SIPSIIGNLKSLLQLDLSENQL------IGSIPLSFGNLSRLTLMSLFNNL 290 (614)
Q Consensus 218 ~~~~~~~~~l~~l~~L~~L~L~~~~~~~-~~~~~l~~l~~L~~L~L~~n~~------~~~~~~~l~~l~~L~~L~L~~~~ 290 (614)
.+....+.. .....++.+++.+|.... ..+..+..+..++...+..+.. .......+.....+....+..+.
T Consensus 212 ~l~~i~~~~-~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~l~~~~ 290 (635)
T 4g8a_A 212 PMNFIQPGA-FKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAY 290 (635)
T ss_dssp CCCEECTTT-TTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSEEEEEEEEC
T ss_pred cccccCccc-ccchhhhhhhhhcccccccccchhhcCCcccccccccccccccccccccccccccccccchhhhhhhhhh
Confidence 887544433 344567788888775442 2334456666666655543221 11122223333444444443322
Q ss_pred cc---ccCCccCCCCCCCCEeecCCCcccccCCccccCCCCCCEEEccCCcccccCcccccCCCCCcEEEcccccCCccC
Q 047332 291 LS---GSLPPILGNLKSLSALGLHINQLSGVIPSSIGNLSSLRALYLYNNGLCGFVPEEIRYLKSLSELELCKNHLSGVI 367 (614)
Q Consensus 291 ~~---~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~ 367 (614)
.. ...+..+..+.+++.+.+..+.+.... .+.....++.|++.+|.+.+..+. .+..|+.+++..|......
T Consensus 291 ~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~~~~---~l~~L~~l~l~~n~~~~~~ 365 (635)
T 4g8a_A 291 LDYYLDGIIDLFNCLTNVSSFSLVSVTIERVK--DFSYNFGWQHLELVNCKFGQFPTL---KLKSLKRLTFTSNKGGNAF 365 (635)
T ss_dssp CCSCEEECTTTTGGGTTCSEEEEESCEEEECG--GGGSCCCCSEEEEESCEESSCCCC---BCTTCCEEEEESCCSCCBC
T ss_pred hcccccchhhhhhhhccccccccccccccccc--ccccchhhhhhhcccccccCcCcc---cchhhhhcccccccCCCCc
Confidence 21 122233444556666666666555332 234455667777776666554322 3455666666666554322
Q ss_pred CccccCCCCCCEEECcCCCCCC--CCCccccCCCCCcEEEccCCcCCcccccccCCCCCCCEEECcCcccccccC-cccc
Q 047332 368 PHSIGNLTGLLLLNMCENHLSG--PIPKSFKNLTSVERVLLNQNNLSGKVYEAFGDHPNLTFLNLSQNNFCGEIS-FNWR 444 (614)
Q Consensus 368 ~~~~~~l~~L~~L~ls~n~l~~--~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~ 444 (614)
....+++|+.++++.|.+.. ..+..+..+.+|+.+++..+.... .+..+..++.|+.+++..+......+ ..+.
T Consensus 366 --~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~-~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~ 442 (635)
T 4g8a_A 366 --SEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFL 442 (635)
T ss_dssp --CCCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEE-ECSCCTTCTTCCEEECTTSEEESTTSSCTTT
T ss_pred --ccccccccccchhhccccccccccccchhhhhhhhhhhcccccccc-ccccccccccccchhhhhccccccccccccc
Confidence 23345666677776666542 233444556666666666665542 23345566666666666665544332 3455
Q ss_pred CCCCCcEEEcccCcccccCCccCCCCCCCCEEeCCCCcCc-cccchhccCCCCCCEeeccCCccccCccccccCCCCCCE
Q 047332 445 NFPKLGTFIVSVNNISGSIPPEIGDSPKLQVLDLSSNSIV-GEIPVQLGKLFSLNKLILNLNQLSGGMPLELGSLTELQY 523 (614)
Q Consensus 445 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~-~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~ 523 (614)
.+++++.++++.|.+.+..+..+..++.|+.|++++|.+. +..|..+..+++|++|++++|++++..|..|.++++|++
T Consensus 443 ~l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~ 522 (635)
T 4g8a_A 443 SLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQV 522 (635)
T ss_dssp TCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCE
T ss_pred cccccccccccccccccccccccccchhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHHcCCCCCCE
Confidence 6666666666666666666666666666677777666543 234556666666777777777666666666666667777
Q ss_pred EeCCCCcCcccCCccccccCCCCEEeCCCCcCCcCCChhhhcC-CCCCeeeCCCCCCC
Q 047332 524 LDLSANKLKSSIPKSIGNLLRLRYLDLSNNQFGHKIPIELEKL-IHLSELDLSYNFLG 580 (614)
Q Consensus 524 L~ls~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~l~~l-~~L~~L~L~~n~~~ 580 (614)
|+|++|.+++..|..|..+++|++|++++|++++..|..+..+ ++|++|+|++|++.
T Consensus 523 L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~ 580 (635)
T 4g8a_A 523 LNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFA 580 (635)
T ss_dssp EECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCCBC
T ss_pred EECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCCc
Confidence 7777776666666666666667777777777666666666665 46667777666553
No 23
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=100.00 E-value=8.3e-43 Score=375.66 Aligned_cols=461 Identities=19% Similarity=0.180 Sum_probs=300.1
Q ss_pred CCCCCCEEeCCCCCCCCCCCcCCCCCCCCCEEEcccccCCCCCCccccCCCCCcEEEeccccCCCCCCcccCCCCCCcEE
Q 047332 109 NLSKLQYLDLGSNQLSGVIPPEIGHLNQLRILYFDVNQLHGSIPPEIGQLSLINVLALCHNNLYGSIPSSLGNLSNLANF 188 (614)
Q Consensus 109 ~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L 188 (614)
.+...+++++++|.++ .+|..+. ++|++|++++|.+.+..+..+.++++|++|++++|.+++..|..+..+++|++|
T Consensus 29 ~~~~~~~l~ls~~~L~-~ip~~~~--~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 105 (562)
T 3a79_B 29 SNELESMVDYSNRNLT-HVPKDLP--PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYL 105 (562)
T ss_dssp ----CCEEECTTSCCC-SCCTTSC--TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEE
T ss_pred ccCCCcEEEcCCCCCc-cCCCCCC--CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEE
Confidence 3445599999999999 5777664 899999999999997777899999999999999999998888889999999999
Q ss_pred EeecCCCcccCCccccCCCCCCeeeccCccCCcc-CCccccCCCCCCeEEcccCccccccchhccCCCCC--CEEeccCC
Q 047332 189 YFNNNSLFDSIPLVLGNLNSLSTMDLSQNQFSGS-IPLSLGNLSNLGILYLYSNSFSGSIPSIIGNLKSL--LQLDLSEN 265 (614)
Q Consensus 189 ~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~-~~~~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L--~~L~L~~n 265 (614)
++++|.+.. +|.. .+++|++|++++|.+++. .|..+.++++|++|++++|.+++. .+..+++| ++|++++|
T Consensus 106 ~Ls~N~l~~-lp~~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~---~~~~l~~L~L~~L~L~~n 179 (562)
T 3a79_B 106 DVSHNRLQN-ISCC--PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQL---DLLPVAHLHLSCILLDLV 179 (562)
T ss_dssp ECTTSCCCE-ECSC--CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTT---TTGGGTTSCEEEEEEEES
T ss_pred ECCCCcCCc-cCcc--ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCccccC---chhhhhhceeeEEEeecc
Confidence 999999874 5544 789999999999998863 457888999999999999988753 34444555 89999998
Q ss_pred cC--ccccCccccCCC--CCCEEecCCCcccccCCc-cCCCCCCCCEeecCCCccc----ccCCccccCCCCCCEEEccC
Q 047332 266 QL--IGSIPLSFGNLS--RLTLMSLFNNLLSGSLPP-ILGNLKSLSALGLHINQLS----GVIPSSIGNLSSLRALYLYN 336 (614)
Q Consensus 266 ~~--~~~~~~~l~~l~--~L~~L~L~~~~~~~~~~~-~l~~l~~L~~L~L~~n~l~----~~~~~~l~~~~~L~~L~l~~ 336 (614)
.+ .+..|..+..+. .+ .+++++|.+.+.++. .+..+++|+.++++.|... ......+..+++|+.+++.+
T Consensus 180 ~l~~~~~~~~~l~~l~~~~l-~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~ 258 (562)
T 3a79_B 180 SYHIKGGETESLQIPNTTVL-HLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQH 258 (562)
T ss_dssp SCCCCSSSCCEEEECCEEEE-EEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEE
T ss_pred cccccccCcccccccCcceE-EEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecC
Confidence 88 667776666554 22 456677776654433 3456677777777776411 01122345566666666666
Q ss_pred CcccccC----cccccCCCCCcEEEcccccCCccCCccc-----cCCCCCCEEECcCCCCCCCCC-ccccCCCCCcEEEc
Q 047332 337 NGLCGFV----PEEIRYLKSLSELELCKNHLSGVIPHSI-----GNLTGLLLLNMCENHLSGPIP-KSFKNLTSVERVLL 406 (614)
Q Consensus 337 n~~~~~~----~~~~~~~~~L~~L~l~~n~~~~~~~~~~-----~~l~~L~~L~ls~n~l~~~~~-~~~~~~~~L~~L~l 406 (614)
+.+.+.. +..+ ..++|++|++++|.+++.+|..+ ..++.|+.+++..+.+ .+| ..+..+
T Consensus 259 ~~l~~~~~~~~~~~~-~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~--~~p~~~~~~~-------- 327 (562)
T 3a79_B 259 IETTWKCSVKLFQFF-WPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVF--LFSKEALYSV-------- 327 (562)
T ss_dssp EEECHHHHHHHHHHH-TTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCC--SSCHHHHHHH--------
T ss_pred CcCcHHHHHHHHHhh-hcccccEEEEeccEeeccccchhhhcccccchheehhhccccee--ecChhhhhhh--------
Confidence 5544321 1111 22366666666666666555544 3333333333333333 111 111000
Q ss_pred cCCcCCcccccccCCCCCCCEEECcCcccccccCccccCCCCCcEEEcccCcccccCCccCCCCCCCCEEeCCCCcCcc-
Q 047332 407 NQNNLSGKVYEAFGDHPNLTFLNLSQNNFCGEISFNWRNFPKLGTFIVSVNNISGSIPPEIGDSPKLQVLDLSSNSIVG- 485 (614)
Q Consensus 407 ~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~- 485 (614)
....+|++|++++|.+.... ....+++|+.|++++|.+++..|..+..+++|++|++++|++.+
T Consensus 328 -------------~~~~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~ 392 (562)
T 3a79_B 328 -------------FAEMNIKMLSISDTPFIHMV--CPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNF 392 (562)
T ss_dssp -------------HHTCCCSEEEEESSCCCCCC--CCSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBT
T ss_pred -------------hccCcceEEEccCCCccccc--CccCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCc
Confidence 01134555666655543221 11456666666666666666666666666777777777776664
Q ss_pred -ccchhccCCCCCCEeeccCCccccCcc-ccccCCCCCCEEeCCCCcCcccCCccccccCCCCEEeCCCCcCCcCCChhh
Q 047332 486 -EIPVQLGKLFSLNKLILNLNQLSGGMP-LELGSLTELQYLDLSANKLKSSIPKSIGNLLRLRYLDLSNNQFGHKIPIEL 563 (614)
Q Consensus 486 -~~~~~~~~~~~L~~L~l~~n~~~~~~~-~~~~~l~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~l 563 (614)
.+|..+..+++|++|++++|.+.+.+| ..+..+++|++|++++|.+++..|..+. ++|+.|++++|+++ .+|..+
T Consensus 393 ~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~-~ip~~~ 469 (562)
T 3a79_B 393 FKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIM-SIPKDV 469 (562)
T ss_dssp THHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTCCEEECCSSCCCGGGGSSCC--TTCSEEECCSSCCC-CCCTTT
T ss_pred ccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcccCCEEECCCCCCCcchhhhhc--CcCCEEECCCCcCc-ccChhh
Confidence 234456667777777777777765333 3466677777777777777655554433 56777777777775 455555
Q ss_pred hcCCCCCeeeCCCCCCCCCCCccccCCCCCCeEECcCCCCcccCC
Q 047332 564 EKLIHLSELDLSYNFLGEEIPFQICNVKSLEKLNLCHNNLLGSFQ 608 (614)
Q Consensus 564 ~~l~~L~~L~L~~n~~~~~~p~~l~~l~sL~~L~l~~n~l~~~ip 608 (614)
.++++|++|++++|++.+..+..+..+++|+.|++++|++.+.+|
T Consensus 470 ~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~~~c~c~ 514 (562)
T 3a79_B 470 THLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCP 514 (562)
T ss_dssp TSSCCCSEEECCSSCCCCCCTTSTTTCTTCCCEECCSCCBCCCHH
T ss_pred cCCCCCCEEECCCCCCCCCCHHHHhcCCCCCEEEecCCCcCCCcc
Confidence 577777777777777764333336677777777777777766544
No 24
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=100.00 E-value=3.2e-42 Score=371.04 Aligned_cols=457 Identities=21% Similarity=0.233 Sum_probs=353.0
Q ss_pred CCCCCcEEECCCCCCCccCcccccCCCCCCEEeCCCCCCCCCCCcCCCCCCCCCEEEcccccCCCCCCccccCCCCCcEE
Q 047332 85 SFPHLVQLNLSFNIFFGIIPPQIGNLSKLQYLDLGSNQLSGVIPPEIGHLNQLRILYFDVNQLHGSIPPEIGQLSLINVL 164 (614)
Q Consensus 85 ~l~~L~~L~Ls~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L 164 (614)
.+...++++++++.+++ +|..+. ++|++|++++|.+++..|.+|+++++|++|++++|.+++..|..|.++++|++|
T Consensus 29 ~~~~~~~l~ls~~~L~~-ip~~~~--~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 105 (562)
T 3a79_B 29 SNELESMVDYSNRNLTH-VPKDLP--PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYL 105 (562)
T ss_dssp ----CCEEECTTSCCCS-CCTTSC--TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEE
T ss_pred ccCCCcEEEcCCCCCcc-CCCCCC--CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEE
Confidence 34455999999999987 676554 899999999999998877899999999999999999998888999999999999
Q ss_pred EeccccCCCCCCcccCCCCCCcEEEeecCCCcc-cCCccccCCCCCCeeeccCccCCccCCccccCCCCC--CeEEcccC
Q 047332 165 ALCHNNLYGSIPSSLGNLSNLANFYFNNNSLFD-SIPLVLGNLNSLSTMDLSQNQFSGSIPLSLGNLSNL--GILYLYSN 241 (614)
Q Consensus 165 ~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~-~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L--~~L~L~~~ 241 (614)
++++|.++ .+|.. .+++|++|++++|.+.+ .+|..++++++|++|++++|.+++. .+..+++| ++|++++|
T Consensus 106 ~Ls~N~l~-~lp~~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~---~~~~l~~L~L~~L~L~~n 179 (562)
T 3a79_B 106 DVSHNRLQ-NISCC--PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQL---DLLPVAHLHLSCILLDLV 179 (562)
T ss_dssp ECTTSCCC-EECSC--CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTT---TTGGGTTSCEEEEEEEES
T ss_pred ECCCCcCC-ccCcc--ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCccccC---chhhhhhceeeEEEeecc
Confidence 99999998 56665 89999999999999987 3567899999999999999999853 34455555 99999999
Q ss_pred cc--ccccchhccCCC-CCCEEeccCCcCccccCc-cccCCCCCCEEecCCCc-----ccccCCccCCCCCCCCEeecCC
Q 047332 242 SF--SGSIPSIIGNLK-SLLQLDLSENQLIGSIPL-SFGNLSRLTLMSLFNNL-----LSGSLPPILGNLKSLSALGLHI 312 (614)
Q Consensus 242 ~~--~~~~~~~l~~l~-~L~~L~L~~n~~~~~~~~-~l~~l~~L~~L~L~~~~-----~~~~~~~~l~~l~~L~~L~L~~ 312 (614)
.+ ++..|..+..+. ..-.+++++|.+.+.++. .+..+++|+.+++++|. +.+. ...+..+++|+.+++..
T Consensus 180 ~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~-~~~l~~l~~L~~L~L~~ 258 (562)
T 3a79_B 180 SYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTF-LSELTRGPTLLNVTLQH 258 (562)
T ss_dssp SCCCCSSSCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHH-HHHHHSCSSCEEEEEEE
T ss_pred cccccccCcccccccCcceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHH-HHHHhccCcceEEEecC
Confidence 99 777787777654 122567888887765543 45678899999999985 2222 23467788999999888
Q ss_pred CcccccC----CccccCCCCCCEEEccCCcccccCcccc-----cCCCCCcEEEcccccCCccCC-ccccC---CCCCCE
Q 047332 313 NQLSGVI----PSSIGNLSSLRALYLYNNGLCGFVPEEI-----RYLKSLSELELCKNHLSGVIP-HSIGN---LTGLLL 379 (614)
Q Consensus 313 n~l~~~~----~~~l~~~~~L~~L~l~~n~~~~~~~~~~-----~~~~~L~~L~l~~n~~~~~~~-~~~~~---l~~L~~ 379 (614)
+.+.+.. +..+ ..++|++|++++|.+.+.+|..+ ..++.|+.+++..+.+ .+| ..+.. ..+|+.
T Consensus 259 ~~l~~~~~~~~~~~~-~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~--~~p~~~~~~~~~~~~L~~ 335 (562)
T 3a79_B 259 IETTWKCSVKLFQFF-WPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVF--LFSKEALYSVFAEMNIKM 335 (562)
T ss_dssp EEECHHHHHHHHHHH-TTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCC--SSCHHHHHHHHHTCCCSE
T ss_pred CcCcHHHHHHHHHhh-hcccccEEEEeccEeeccccchhhhcccccchheehhhccccee--ecChhhhhhhhccCcceE
Confidence 7766421 1122 23599999999999998888776 5555566666666655 233 22221 257999
Q ss_pred EECcCCCCCCCCCccccCCCCCcEEEccCCcCCcccccccCCCCCCCEEECcCcccccc--cCccccCCCCCcEEEcccC
Q 047332 380 LNMCENHLSGPIPKSFKNLTSVERVLLNQNNLSGKVYEAFGDHPNLTFLNLSQNNFCGE--ISFNWRNFPKLGTFIVSVN 457 (614)
Q Consensus 380 L~ls~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~--~~~~~~~~~~L~~L~l~~~ 457 (614)
|++++|.+.... ....+++|++|++++|.+++..+..+..+++|++|++++|.+.+. ++..+..+++|+.|++++|
T Consensus 336 L~l~~n~~~~~~--~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N 413 (562)
T 3a79_B 336 LSISDTPFIHMV--CPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLN 413 (562)
T ss_dssp EEEESSCCCCCC--CCSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTS
T ss_pred EEccCCCccccc--CccCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCC
Confidence 999999876432 126788899999999999888888888899999999999988863 3456778888888888888
Q ss_pred cccccCCc-cCCCCCCCCEEeCCCCcCccccchhccCCCCCCEeeccCCccccCccccccCCCCCCEEeCCCCcCcccCC
Q 047332 458 NISGSIPP-EIGDSPKLQVLDLSSNSIVGEIPVQLGKLFSLNKLILNLNQLSGGMPLELGSLTELQYLDLSANKLKSSIP 536 (614)
Q Consensus 458 ~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~ 536 (614)
.+++.+|. .+..+++|++|++++|.+++..|..+. ++|++|++++|.++ .+|..+..+++|++|++++|.++ .+|
T Consensus 414 ~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~-~ip~~~~~l~~L~~L~L~~N~l~-~l~ 489 (562)
T 3a79_B 414 SLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLK-SVP 489 (562)
T ss_dssp CCBSCCSSCCCCCCTTCCEEECCSSCCCGGGGSSCC--TTCSEEECCSSCCC-CCCTTTTSSCCCSEEECCSSCCC-CCC
T ss_pred cCCCccChhhhcCcccCCEEECCCCCCCcchhhhhc--CcCCEEECCCCcCc-ccChhhcCCCCCCEEECCCCCCC-CCC
Confidence 88875554 466778888888888888766665543 67888888888887 56666668888888888888888 455
Q ss_pred cc-ccccCCCCEEeCCCCcCCcCCC
Q 047332 537 KS-IGNLLRLRYLDLSNNQFGHKIP 560 (614)
Q Consensus 537 ~~-l~~l~~L~~L~l~~n~~~~~~p 560 (614)
.. +..+++|+.|++++|++.+..+
T Consensus 490 ~~~~~~l~~L~~L~l~~N~~~c~c~ 514 (562)
T 3a79_B 490 DGVFDRLTSLQYIWLHDNPWDCTCP 514 (562)
T ss_dssp TTSTTTCTTCCCEECCSCCBCCCHH
T ss_pred HHHHhcCCCCCEEEecCCCcCCCcc
Confidence 44 7788888888888888876554
No 25
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=4.4e-40 Score=345.62 Aligned_cols=382 Identities=22% Similarity=0.179 Sum_probs=278.5
Q ss_pred CeeeccCccCCccCCccccCCCCCCeEEcccCccccccchhccCCCCCCEEeccCCcCcccc-CccccCCCCCCEEecCC
Q 047332 210 STMDLSQNQFSGSIPLSLGNLSNLGILYLYSNSFSGSIPSIIGNLKSLLQLDLSENQLIGSI-PLSFGNLSRLTLMSLFN 288 (614)
Q Consensus 210 ~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~-~~~l~~l~~L~~L~L~~ 288 (614)
+.++.+++.++ .+|. +. ++|++|++++|.+++..|..+..+++|++|++++|.+.+.+ +..|..+++|++|++++
T Consensus 13 ~~~~c~~~~l~-~lp~-l~--~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~ 88 (455)
T 3v47_A 13 YNAICINRGLH-QVPE-LP--AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDY 88 (455)
T ss_dssp TEEECCSSCCS-SCCC-CC--TTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTT
T ss_pred cccCcCCCCcc-cCCC-CC--CccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCC
Confidence 45666666666 4554 22 67888888888888777778888888888888888876444 55678888888888888
Q ss_pred CcccccCCccCCCCCCCCEeecCCCcccccCCcc--ccCCCCCCEEEccCCcccccCccc-ccCCCCCcEEEcccccCCc
Q 047332 289 NLLSGSLPPILGNLKSLSALGLHINQLSGVIPSS--IGNLSSLRALYLYNNGLCGFVPEE-IRYLKSLSELELCKNHLSG 365 (614)
Q Consensus 289 ~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~--l~~~~~L~~L~l~~n~~~~~~~~~-~~~~~~L~~L~l~~n~~~~ 365 (614)
|.+++..|..+..+++|++|++++|.+++..+.. +..+++|++|++++|.+.+..|.. +..+++|++|++++|.+++
T Consensus 89 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~ 168 (455)
T 3v47_A 89 NQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKS 168 (455)
T ss_dssp CTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSC
T ss_pred CccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccc
Confidence 8888777888888888888888888887644433 777888888888888888776655 6778888888888888887
Q ss_pred cCCccccCC--CCCCEEECcCCCCCCCCCcc--------ccCCCCCcEEEccCCcCCcccccccCC---CCCCCEEECcC
Q 047332 366 VIPHSIGNL--TGLLLLNMCENHLSGPIPKS--------FKNLTSVERVLLNQNNLSGKVYEAFGD---HPNLTFLNLSQ 432 (614)
Q Consensus 366 ~~~~~~~~l--~~L~~L~ls~n~l~~~~~~~--------~~~~~~L~~L~l~~n~~~~~~~~~~~~---~~~L~~L~l~~ 432 (614)
..+..+..+ .+++.+++++|.+.+..+.. +..+++|++|++++|.+.+..+..+.. .++|+.|++++
T Consensus 169 ~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~ 248 (455)
T 3v47_A 169 ICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSN 248 (455)
T ss_dssp CCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTT
T ss_pred cChhhhhccccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeecc
Confidence 777766655 56788888888777554433 224567777777777776655554432 36777777777
Q ss_pred cccccccCccccCCCCCcEEEcccCcccccCCccCC--CCCCCCEEeCCCCcCccccchhccCCCCCCEeeccCCccccC
Q 047332 433 NNFCGEISFNWRNFPKLGTFIVSVNNISGSIPPEIG--DSPKLQVLDLSSNSIVGEIPVQLGKLFSLNKLILNLNQLSGG 510 (614)
Q Consensus 433 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~ 510 (614)
|...+.... .+.+....+..+. ..++|++|++++|.+.+..|..+..+++|++|++++|.+.+.
T Consensus 249 ~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~ 314 (455)
T 3v47_A 249 SYNMGSSFG--------------HTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKI 314 (455)
T ss_dssp CTTTSCCTT--------------CCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEE
T ss_pred ccccccccc--------------hhhhccCcccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCccccc
Confidence 665432111 0011111111111 236788888888888777777788888888888888888877
Q ss_pred ccccccCCCCCCEEeCCCCcCcccCCccccccCCCCEEeCCCCcCCcCCChhhhcCCCCCeeeCCCCCCCCCCCccccCC
Q 047332 511 MPLELGSLTELQYLDLSANKLKSSIPKSIGNLLRLRYLDLSNNQFGHKIPIELEKLIHLSELDLSYNFLGEEIPFQICNV 590 (614)
Q Consensus 511 ~~~~~~~l~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l 590 (614)
.|..|..+++|++|++++|.+.+..|..+..+++|++|++++|++++..|..+.++++|++|++++|++.+..+..|..+
T Consensus 315 ~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l 394 (455)
T 3v47_A 315 DDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRL 394 (455)
T ss_dssp CTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTC
T ss_pred ChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhccccccccEEECCCCccccCCHhHhccC
Confidence 77778888888888888888877777778888888888888888877777788888888888888888877666677778
Q ss_pred CCCCeEECcCCCCcccCCC
Q 047332 591 KSLEKLNLCHNNLLGSFQQ 609 (614)
Q Consensus 591 ~sL~~L~l~~n~l~~~ip~ 609 (614)
++|++|++++|++.+.+|.
T Consensus 395 ~~L~~L~l~~N~l~~~~~~ 413 (455)
T 3v47_A 395 TSLQKIWLHTNPWDCSCPR 413 (455)
T ss_dssp TTCCEEECCSSCBCCCTTT
T ss_pred CcccEEEccCCCcccCCCc
Confidence 8888888888888888774
No 26
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=100.00 E-value=4.6e-41 Score=333.47 Aligned_cols=292 Identities=32% Similarity=0.519 Sum_probs=244.6
Q ss_pred CCchHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcc--ccceeeCCC---CCEEEEEcCCCCCCc-
Q 047332 3 SDSSKETFALLKWKRSLQNKNISLLSSWTLHPDNASNVPSYSKSKISPCA--WLGISCNQA---GRVISINLSSMALNG- 76 (614)
Q Consensus 3 ~~~~~~~~~l~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~c~--w~~~~c~~~---~~v~~l~l~~~~l~~- 76 (614)
...++|++||++||+++.+ |. .+++|. . +.+||. |.||.|+.. ++|++++++++.+.+
T Consensus 2 ~c~~~~~~aL~~~k~~~~~-~~-~l~~W~--~------------~~~~C~~~w~gv~C~~~~~~~~l~~L~L~~~~l~~~ 65 (313)
T 1ogq_A 2 LCNPQDKQALLQIKKDLGN-PT-TLSSWL--P------------TTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKP 65 (313)
T ss_dssp CSCHHHHHHHHHHHHHTTC-CG-GGTTCC--T------------TSCTTTTCSTTEEECCSSSCCCEEEEEEECCCCSSC
T ss_pred CCCHHHHHHHHHHHHhcCC-cc-cccCCC--C------------CCCCCcCCCcceEeCCCCCCceEEEEECCCCCccCC
Confidence 3468899999999999976 44 688997 3 568998 999999864 799999999999998
Q ss_pred -ccCcccccCCCCCcEEECCC-CCCCccCcccccCCCCCCEEeCCCCCCCCCCCcCCCCCCCCCEEEcccccCCCCCCcc
Q 047332 77 -TLQEFAFSSFPHLVQLNLSF-NIFFGIIPPQIGNLSKLQYLDLGSNQLSGVIPPEIGHLNQLRILYFDVNQLHGSIPPE 154 (614)
Q Consensus 77 -~~~~~~~~~l~~L~~L~Ls~-~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~ 154 (614)
.++. .+..+++|++|++++ |.+.+.+|..|.++++|++|++++|.+++.+|..|+.+++|++|++++|.+.+.+|..
T Consensus 66 ~~~~~-~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~ 144 (313)
T 1ogq_A 66 YPIPS-SLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPS 144 (313)
T ss_dssp EECCG-GGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGG
T ss_pred cccCh-hHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChH
Confidence 7887 899999999999995 8888888999999999999999999998888988999999999999999998888888
Q ss_pred ccCCCCCcEEEeccccCCCCCCcccCCCC-CCcEEEeecCCCcccCCccccCCCCCCeeeccCccCCccCCccccCCCCC
Q 047332 155 IGQLSLINVLALCHNNLYGSIPSSLGNLS-NLANFYFNNNSLFDSIPLVLGNLNSLSTMDLSQNQFSGSIPLSLGNLSNL 233 (614)
Q Consensus 155 ~~~l~~L~~L~l~~~~l~~~~~~~l~~l~-~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L 233 (614)
+.++++|++|++++|.+++.+|..+..++ +|++|++++|.+.+.+|..+..++ |++|++++|.+++..+..+..+++|
T Consensus 145 ~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l~~~~~~~~~~l~~L 223 (313)
T 1ogq_A 145 ISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNT 223 (313)
T ss_dssp GGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSEEEECCGGGCCTTSCC
T ss_pred HhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCcccCcCCHHHhcCCCC
Confidence 99999999999999988888888888887 888888888888888888787776 8888888888887777778888888
Q ss_pred CeEEcccCccccccchhccCCCCCCEEeccCCcCccccCccccCCCCCCEEecCCCcccccCCccCCCCCCCCEeecCCC
Q 047332 234 GILYLYSNSFSGSIPSIIGNLKSLLQLDLSENQLIGSIPLSFGNLSRLTLMSLFNNLLSGSLPPILGNLKSLSALGLHIN 313 (614)
Q Consensus 234 ~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~n 313 (614)
++|++++|.+++..+. +..+++|++|++++|.+.+.+|..+..+++|++|++++|.+++.+|.. ..+++|+.+++++|
T Consensus 224 ~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~-~~l~~L~~l~l~~N 301 (313)
T 1ogq_A 224 QKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG-GNLQRFDVSAYANN 301 (313)
T ss_dssp SEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCS-TTGGGSCGGGTCSS
T ss_pred CEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCC-ccccccChHHhcCC
Confidence 8888888887755554 667778888888888877777777777777888888887777777764 66777777777777
Q ss_pred c
Q 047332 314 Q 314 (614)
Q Consensus 314 ~ 314 (614)
.
T Consensus 302 ~ 302 (313)
T 1ogq_A 302 K 302 (313)
T ss_dssp S
T ss_pred C
Confidence 6
No 27
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=100.00 E-value=5.4e-40 Score=341.81 Aligned_cols=425 Identities=27% Similarity=0.323 Sum_probs=251.4
Q ss_pred CCCCCCEEeCCCCCCCCCCCcCCCCCCCCCEEEcccccCCCCCCccccCCCCCcEEEeccccCCCCCCcccCCCCCCcEE
Q 047332 109 NLSKLQYLDLGSNQLSGVIPPEIGHLNQLRILYFDVNQLHGSIPPEIGQLSLINVLALCHNNLYGSIPSSLGNLSNLANF 188 (614)
Q Consensus 109 ~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L 188 (614)
+.++|++|++++|.+ +.+|.+++++++|++|++++|.+.+.+|..++++++|+.+++.+|.. .++++|
T Consensus 9 ~~~~L~~L~l~~n~l-~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~-----------~~l~~L 76 (454)
T 1jl5_A 9 SNTFLQEPLRHSSNL-TEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLD-----------RQAHEL 76 (454)
T ss_dssp --------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHH-----------HTCSEE
T ss_pred ccccchhhhcccCch-hhCChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhc-----------cCCCEE
Confidence 357888888888888 58888888888888888888888888888888888877777766632 457788
Q ss_pred EeecCCCcccCCccccCCCCCCeeeccCccCCccCCccccCCCCCCeEEcccCccccccchhccCCCCCCEEeccCCcCc
Q 047332 189 YFNNNSLFDSIPLVLGNLNSLSTMDLSQNQFSGSIPLSLGNLSNLGILYLYSNSFSGSIPSIIGNLKSLLQLDLSENQLI 268 (614)
Q Consensus 189 ~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~n~~~ 268 (614)
++++|.+.+. |. -.++|++|++++|.+++ +|.. .++|++|++++|.+++ ++.. .++|++|++++|.+.
T Consensus 77 ~l~~~~l~~l-p~---~~~~L~~L~l~~n~l~~-lp~~---~~~L~~L~l~~n~l~~-l~~~---~~~L~~L~L~~n~l~ 144 (454)
T 1jl5_A 77 ELNNLGLSSL-PE---LPPHLESLVASCNSLTE-LPEL---PQSLKSLLVDNNNLKA-LSDL---PPLLEYLGVSNNQLE 144 (454)
T ss_dssp ECTTSCCSCC-CS---CCTTCSEEECCSSCCSS-CCCC---CTTCCEEECCSSCCSC-CCSC---CTTCCEEECCSSCCS
T ss_pred EecCCccccC-CC---CcCCCCEEEccCCcCCc-cccc---cCCCcEEECCCCccCc-ccCC---CCCCCEEECcCCCCC
Confidence 8888877653 32 13678888888888885 5543 3688899998888874 3321 268999999999888
Q ss_pred cccCccccCCCCCCEEecCCCcccccCCccCCCCCCCCEeecCCCcccccCCccccCCCCCCEEEccCCcccccCccccc
Q 047332 269 GSIPLSFGNLSRLTLMSLFNNLLSGSLPPILGNLKSLSALGLHINQLSGVIPSSIGNLSSLRALYLYNNGLCGFVPEEIR 348 (614)
Q Consensus 269 ~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~ 348 (614)
+ +| .+..+++|++|++++|.+++ +|..+ ++|++|++++|.+++ +| .+..+++|+.|++++|.+.+ +|..
T Consensus 145 ~-lp-~~~~l~~L~~L~l~~N~l~~-lp~~~---~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~~N~l~~-l~~~-- 213 (454)
T 1jl5_A 145 K-LP-ELQNSSFLKIIDVDNNSLKK-LPDLP---PSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYADNNSLKK-LPDL-- 213 (454)
T ss_dssp S-CC-CCTTCTTCCEEECCSSCCSC-CCCCC---TTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSS-CCCC--
T ss_pred C-Cc-ccCCCCCCCEEECCCCcCcc-cCCCc---ccccEEECcCCcCCc-Cc-cccCCCCCCEEECCCCcCCc-CCCC--
Confidence 5 66 58889999999999998884 55433 588999999998886 45 57888899999999988886 3332
Q ss_pred CCCCCcEEEcccccCCccCCccccCCCCCCEEECcCCCCCCCCCccccCCCCCcEEEccCCcCCcccccccCCCCCCCEE
Q 047332 349 YLKSLSELELCKNHLSGVIPHSIGNLTGLLLLNMCENHLSGPIPKSFKNLTSVERVLLNQNNLSGKVYEAFGDHPNLTFL 428 (614)
Q Consensus 349 ~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L 428 (614)
.++|++|++++|.++ .+|. +..+++|++|++++|.+++ +|. ..++|+.|++++|++.+ .+. ..++|++|
T Consensus 214 -~~~L~~L~l~~n~l~-~lp~-~~~l~~L~~L~l~~N~l~~-l~~---~~~~L~~L~l~~N~l~~-l~~---~~~~L~~L 282 (454)
T 1jl5_A 214 -PLSLESIVAGNNILE-ELPE-LQNLPFLTTIYADNNLLKT-LPD---LPPSLEALNVRDNYLTD-LPE---LPQSLTFL 282 (454)
T ss_dssp -CTTCCEEECCSSCCS-SCCC-CTTCTTCCEEECCSSCCSS-CCS---CCTTCCEEECCSSCCSC-CCC---CCTTCCEE
T ss_pred -cCcccEEECcCCcCC-cccc-cCCCCCCCEEECCCCcCCc-ccc---cccccCEEECCCCcccc-cCc---ccCcCCEE
Confidence 258888888888888 5563 7788888888888888875 333 24678888888888775 222 23678888
Q ss_pred ECcCcccccccCccccCCCCCcEEEcccCcccccCCccCCCCCCCCEEeCCCCcCccccchhccCCCCCCEeeccCCccc
Q 047332 429 NLSQNNFCGEISFNWRNFPKLGTFIVSVNNISGSIPPEIGDSPKLQVLDLSSNSIVGEIPVQLGKLFSLNKLILNLNQLS 508 (614)
Q Consensus 429 ~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~ 508 (614)
++++|.+.+... ..++|+.|++++|++++. +. ..++|++|++++|++.+ +|.. +++|++|++++|.++
T Consensus 283 ~ls~N~l~~l~~----~~~~L~~L~l~~N~l~~i-~~---~~~~L~~L~Ls~N~l~~-lp~~---~~~L~~L~L~~N~l~ 350 (454)
T 1jl5_A 283 DVSENIFSGLSE----LPPNLYYLNASSNEIRSL-CD---LPPSLEELNVSNNKLIE-LPAL---PPRLERLIASFNHLA 350 (454)
T ss_dssp ECCSSCCSEESC----CCTTCCEEECCSSCCSEE-CC---CCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCS
T ss_pred ECcCCccCcccC----cCCcCCEEECcCCcCCcc-cC---CcCcCCEEECCCCcccc-cccc---CCcCCEEECCCCccc
Confidence 888888775321 126778888888877642 21 12477788888877764 4433 467777888877777
Q ss_pred cCccccccCCCCCCEEeCCCCcCcc--cCCccccccCCCCEEeCCCCcCCcCCChhhhcCCCCCeeeCCCCCCCC--CCC
Q 047332 509 GGMPLELGSLTELQYLDLSANKLKS--SIPKSIGNLLRLRYLDLSNNQFGHKIPIELEKLIHLSELDLSYNFLGE--EIP 584 (614)
Q Consensus 509 ~~~~~~~~~l~~L~~L~ls~n~l~~--~~~~~l~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~L~~n~~~~--~~p 584 (614)
.+|. .+++|++|++++|.+.+ .+|.++..+ +.|.+.+.+|.. +++|++|++++|++.+ .+|
T Consensus 351 -~lp~---~l~~L~~L~L~~N~l~~l~~ip~~l~~L--------~~n~~~~~i~~~---~~~L~~L~ls~N~l~~~~~iP 415 (454)
T 1jl5_A 351 -EVPE---LPQNLKQLHVEYNPLREFPDIPESVEDL--------RMNSHLAEVPEL---PQNLKQLHVETNPLREFPDIP 415 (454)
T ss_dssp -CCCC---CCTTCCEEECCSSCCSSCCCCCTTCCEE--------ECCC--------------------------------
T ss_pred -cccc---hhhhccEEECCCCCCCcCCCChHHHHhh--------hhcccccccccc---cCcCCEEECCCCcCCccccch
Confidence 3444 35777788888777776 455544332 234555666542 4789999999999987 444
Q ss_pred ccccCCCCCCeEECcCCCCcccCCCCCC
Q 047332 585 FQICNVKSLEKLNLCHNNLLGSFQQKKD 612 (614)
Q Consensus 585 ~~l~~l~sL~~L~l~~n~l~~~ip~~~~ 612 (614)
++++.|.+.+|.+.+++|....
T Consensus 416 ------~sl~~L~~~~~~~~~~~~~~~~ 437 (454)
T 1jl5_A 416 ------ESVEDLRMNSERVVDPYEFAHE 437 (454)
T ss_dssp ----------------------------
T ss_pred ------hhHhheeCcCcccCCccccCHH
Confidence 4577778899999888876544
No 28
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=3.4e-39 Score=338.88 Aligned_cols=381 Identities=23% Similarity=0.238 Sum_probs=294.0
Q ss_pred cEEEeecCCCcccCCccccCCCCCCeeeccCccCCccCCccccCCCCCCeEEcccCcccccc-chhccCCCCCCEEeccC
Q 047332 186 ANFYFNNNSLFDSIPLVLGNLNSLSTMDLSQNQFSGSIPLSLGNLSNLGILYLYSNSFSGSI-PSIIGNLKSLLQLDLSE 264 (614)
Q Consensus 186 ~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~-~~~l~~l~~L~~L~L~~ 264 (614)
+.++.+++.+.. +|. + .++|++|++++|.+++..+..+..+++|++|++++|.+.+.+ +..+..+++|++|++++
T Consensus 13 ~~~~c~~~~l~~-lp~-l--~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~ 88 (455)
T 3v47_A 13 YNAICINRGLHQ-VPE-L--PAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDY 88 (455)
T ss_dssp TEEECCSSCCSS-CCC-C--CTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTT
T ss_pred cccCcCCCCccc-CCC-C--CCccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCC
Confidence 456777766643 444 2 278999999999999888999999999999999999987555 56789999999999999
Q ss_pred CcCccccCccccCCCCCCEEecCCCcccccCCcc--CCCCCCCCEeecCCCcccccCCcc-ccCCCCCCEEEccCCcccc
Q 047332 265 NQLIGSIPLSFGNLSRLTLMSLFNNLLSGSLPPI--LGNLKSLSALGLHINQLSGVIPSS-IGNLSSLRALYLYNNGLCG 341 (614)
Q Consensus 265 n~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~--l~~l~~L~~L~L~~n~l~~~~~~~-l~~~~~L~~L~l~~n~~~~ 341 (614)
|.+.+..|..+..+++|++|++++|.+++..+.. +..+++|++|++++|.+++..|.. +..+++|++|++++|.+.+
T Consensus 89 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~ 168 (455)
T 3v47_A 89 NQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKS 168 (455)
T ss_dssp CTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSC
T ss_pred CccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccc
Confidence 9999888999999999999999999998755544 899999999999999999887766 7899999999999999999
Q ss_pred cCcccccCC--CCCcEEEcccccCCccCCccc--------cCCCCCCEEECcCCCCCCCCCccccCC---CCCcEEEccC
Q 047332 342 FVPEEIRYL--KSLSELELCKNHLSGVIPHSI--------GNLTGLLLLNMCENHLSGPIPKSFKNL---TSVERVLLNQ 408 (614)
Q Consensus 342 ~~~~~~~~~--~~L~~L~l~~n~~~~~~~~~~--------~~l~~L~~L~ls~n~l~~~~~~~~~~~---~~L~~L~l~~ 408 (614)
..+..+..+ ..|+.+++++|.+.+..+..+ ..+++|++|++++|.+++..+..+... ++|+.|++++
T Consensus 169 ~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~ 248 (455)
T 3v47_A 169 ICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSN 248 (455)
T ss_dssp CCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTT
T ss_pred cChhhhhccccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeecc
Confidence 888777665 689999999999987654432 356789999999999988777665443 8899999999
Q ss_pred CcCCcccccccCCCCCCCEEECcCcccccccCcccc--CCCCCcEEEcccCcccccCCccCCCCCCCCEEeCCCCcCccc
Q 047332 409 NNLSGKVYEAFGDHPNLTFLNLSQNNFCGEISFNWR--NFPKLGTFIVSVNNISGSIPPEIGDSPKLQVLDLSSNSIVGE 486 (614)
Q Consensus 409 n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 486 (614)
|...+.... .+.+.+.....+. ..++|+.|++++|.+++..+..+..+++|++|++++|.+.+.
T Consensus 249 ~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~ 314 (455)
T 3v47_A 249 SYNMGSSFG--------------HTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKI 314 (455)
T ss_dssp CTTTSCCTT--------------CCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEE
T ss_pred ccccccccc--------------hhhhccCcccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCccccc
Confidence 876543211 1111111111111 245677777777777766666777777777777777777766
Q ss_pred cchhccCCCCCCEeeccCCccccCccccccCCCCCCEEeCCCCcCcccCCccccccCCCCEEeCCCCcCCcCCChhhhcC
Q 047332 487 IPVQLGKLFSLNKLILNLNQLSGGMPLELGSLTELQYLDLSANKLKSSIPKSIGNLLRLRYLDLSNNQFGHKIPIELEKL 566 (614)
Q Consensus 487 ~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~l~~l 566 (614)
.|..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+.+..|..+..+++|++|++++|++++..+..+..+
T Consensus 315 ~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l 394 (455)
T 3v47_A 315 DDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRL 394 (455)
T ss_dssp CTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTC
T ss_pred ChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhccccccccEEECCCCccccCCHhHhccC
Confidence 66677777777777777777776666677777777777777777776667777777777777777777766655666777
Q ss_pred CCCCeeeCCCCCCCCCCC
Q 047332 567 IHLSELDLSYNFLGEEIP 584 (614)
Q Consensus 567 ~~L~~L~L~~n~~~~~~p 584 (614)
++|++|++++|++.+..|
T Consensus 395 ~~L~~L~l~~N~l~~~~~ 412 (455)
T 3v47_A 395 TSLQKIWLHTNPWDCSCP 412 (455)
T ss_dssp TTCCEEECCSSCBCCCTT
T ss_pred CcccEEEccCCCcccCCC
Confidence 777777777777776665
No 29
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=100.00 E-value=1.1e-39 Score=339.39 Aligned_cols=425 Identities=24% Similarity=0.254 Sum_probs=280.4
Q ss_pred CCCCCcEEECCCCCCCccCcccccCCCCCCEEeCCCCCCCCCCCcCCCCCCCCCEEEcccccCCCCCCccccCCCCCcEE
Q 047332 85 SFPHLVQLNLSFNIFFGIIPPQIGNLSKLQYLDLGSNQLSGVIPPEIGHLNQLRILYFDVNQLHGSIPPEIGQLSLINVL 164 (614)
Q Consensus 85 ~l~~L~~L~Ls~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L 164 (614)
..++|++|++++|.+ +.+|.+++++++|++|++++|.+.+.+|..++.+++|+++++.+|.. .++++|
T Consensus 9 ~~~~L~~L~l~~n~l-~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~-----------~~l~~L 76 (454)
T 1jl5_A 9 SNTFLQEPLRHSSNL-TEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLD-----------RQAHEL 76 (454)
T ss_dssp --------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHH-----------HTCSEE
T ss_pred ccccchhhhcccCch-hhCChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhc-----------cCCCEE
Confidence 468999999999999 78999999999999999999999999999999999987777776642 467788
Q ss_pred EeccccCCCCCCcccCCCCCCcEEEeecCCCcccCCccccCCCCCCeeeccCccCCccCCccccCCCCCCeEEcccCccc
Q 047332 165 ALCHNNLYGSIPSSLGNLSNLANFYFNNNSLFDSIPLVLGNLNSLSTMDLSQNQFSGSIPLSLGNLSNLGILYLYSNSFS 244 (614)
Q Consensus 165 ~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~ 244 (614)
++++|.+++ +|.. .++|++|++++|.+.+ +|.. .++|++|++++|.+++ ++.. .++|++|++++|.++
T Consensus 77 ~l~~~~l~~-lp~~---~~~L~~L~l~~n~l~~-lp~~---~~~L~~L~l~~n~l~~-l~~~---~~~L~~L~L~~n~l~ 144 (454)
T 1jl5_A 77 ELNNLGLSS-LPEL---PPHLESLVASCNSLTE-LPEL---PQSLKSLLVDNNNLKA-LSDL---PPLLEYLGVSNNQLE 144 (454)
T ss_dssp ECTTSCCSC-CCSC---CTTCSEEECCSSCCSS-CCCC---CTTCCEEECCSSCCSC-CCSC---CTTCCEEECCSSCCS
T ss_pred EecCCcccc-CCCC---cCCCCEEEccCCcCCc-cccc---cCCCcEEECCCCccCc-ccCC---CCCCCEEECcCCCCC
Confidence 888887775 3331 3678888888888876 5543 3789999999998874 3221 168999999999998
Q ss_pred cccchhccCCCCCCEEeccCCcCccccCccccCCCCCCEEecCCCcccccCCccCCCCCCCCEeecCCCcccccCCcccc
Q 047332 245 GSIPSIIGNLKSLLQLDLSENQLIGSIPLSFGNLSRLTLMSLFNNLLSGSLPPILGNLKSLSALGLHINQLSGVIPSSIG 324 (614)
Q Consensus 245 ~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~ 324 (614)
+ +| .++.+++|++|++++|.+.+ +|.. .++|++|++++|.+++ +| .+..+++|++|++++|.+++ +|..
T Consensus 145 ~-lp-~~~~l~~L~~L~l~~N~l~~-lp~~---~~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~~N~l~~-l~~~-- 213 (454)
T 1jl5_A 145 K-LP-ELQNSSFLKIIDVDNNSLKK-LPDL---PPSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYADNNSLKK-LPDL-- 213 (454)
T ss_dssp S-CC-CCTTCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSS-CCCC--
T ss_pred C-Cc-ccCCCCCCCEEECCCCcCcc-cCCC---cccccEEECcCCcCCc-Cc-cccCCCCCCEEECCCCcCCc-CCCC--
Confidence 5 77 59999999999999999885 5544 3599999999999986 56 58999999999999999985 4432
Q ss_pred CCCCCCEEEccCCcccccCcccccCCCCCcEEEcccccCCccCCccccCCCCCCEEECcCCCCCCCCCccccCCCCCcEE
Q 047332 325 NLSSLRALYLYNNGLCGFVPEEIRYLKSLSELELCKNHLSGVIPHSIGNLTGLLLLNMCENHLSGPIPKSFKNLTSVERV 404 (614)
Q Consensus 325 ~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L 404 (614)
.++|+.|++++|.+.. +| .+..+++|++|++++|.+++ +|.. +++|+.|++++|.+++ +|.. .++|+.|
T Consensus 214 -~~~L~~L~l~~n~l~~-lp-~~~~l~~L~~L~l~~N~l~~-l~~~---~~~L~~L~l~~N~l~~-l~~~---~~~L~~L 282 (454)
T 1jl5_A 214 -PLSLESIVAGNNILEE-LP-ELQNLPFLTTIYADNNLLKT-LPDL---PPSLEALNVRDNYLTD-LPEL---PQSLTFL 282 (454)
T ss_dssp -CTTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSS-CCSC---CTTCCEEECCSSCCSC-CCCC---CTTCCEE
T ss_pred -cCcccEEECcCCcCCc-cc-ccCCCCCCCEEECCCCcCCc-cccc---ccccCEEECCCCcccc-cCcc---cCcCCEE
Confidence 2589999999999984 56 48899999999999999985 4442 4789999999999986 4443 4789999
Q ss_pred EccCCcCCcccccccCCCCCCCEEECcCcccccccCccccCCCCCcEEEcccCcccccCCccCCCCCCCCEEeCCCCcCc
Q 047332 405 LLNQNNLSGKVYEAFGDHPNLTFLNLSQNNFCGEISFNWRNFPKLGTFIVSVNNISGSIPPEIGDSPKLQVLDLSSNSIV 484 (614)
Q Consensus 405 ~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 484 (614)
++++|.+++... ..++|++|++++|.+.+.. . ..++|+.|++++|++++ +|.. +++|++|++++|.++
T Consensus 283 ~ls~N~l~~l~~----~~~~L~~L~l~~N~l~~i~-~---~~~~L~~L~Ls~N~l~~-lp~~---~~~L~~L~L~~N~l~ 350 (454)
T 1jl5_A 283 DVSENIFSGLSE----LPPNLYYLNASSNEIRSLC-D---LPPSLEELNVSNNKLIE-LPAL---PPRLERLIASFNHLA 350 (454)
T ss_dssp ECCSSCCSEESC----CCTTCCEEECCSSCCSEEC-C---CCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCS
T ss_pred ECcCCccCcccC----cCCcCCEEECcCCcCCccc-C---CcCcCCEEECCCCcccc-cccc---CCcCCEEECCCCccc
Confidence 999999986321 1379999999999988632 1 13699999999999986 5554 589999999999998
Q ss_pred cccchhccCCCCCCEeeccCCcccc--CccccccCCCCCCEEeCCCCcCcccCCccccccCCCCEEeCCCCcCCc--CCC
Q 047332 485 GEIPVQLGKLFSLNKLILNLNQLSG--GMPLELGSLTELQYLDLSANKLKSSIPKSIGNLLRLRYLDLSNNQFGH--KIP 560 (614)
Q Consensus 485 ~~~~~~~~~~~~L~~L~l~~n~~~~--~~~~~~~~l~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~--~~p 560 (614)
.+|. .+++|++|++++|.+++ .+|..+. .| +.|.+.+.+|.. +++|+.|++++|++++ .+|
T Consensus 351 -~lp~---~l~~L~~L~L~~N~l~~l~~ip~~l~------~L--~~n~~~~~i~~~---~~~L~~L~ls~N~l~~~~~iP 415 (454)
T 1jl5_A 351 -EVPE---LPQNLKQLHVEYNPLREFPDIPESVE------DL--RMNSHLAEVPEL---PQNLKQLHVETNPLREFPDIP 415 (454)
T ss_dssp -CCCC---CCTTCCEEECCSSCCSSCCCCCTTCC------EE--ECCC--------------------------------
T ss_pred -cccc---hhhhccEEECCCCCCCcCCCChHHHH------hh--hhcccccccccc---cCcCCEEECCCCcCCccccch
Confidence 5665 47899999999999997 4555443 33 346666677753 5789999999999987 555
Q ss_pred hhhhcCCCCCeeeCCCCCCCCCCCcccc
Q 047332 561 IELEKLIHLSELDLSYNFLGEEIPFQIC 588 (614)
Q Consensus 561 ~~l~~l~~L~~L~L~~n~~~~~~p~~l~ 588 (614)
. +++.|++.+|.+.+.++....
T Consensus 416 ~------sl~~L~~~~~~~~~~~~~~~~ 437 (454)
T 1jl5_A 416 E------SVEDLRMNSERVVDPYEFAHE 437 (454)
T ss_dssp ----------------------------
T ss_pred h------hHhheeCcCcccCCccccCHH
Confidence 3 567788899988877665543
No 30
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=100.00 E-value=3.9e-36 Score=315.79 Aligned_cols=346 Identities=28% Similarity=0.412 Sum_probs=265.0
Q ss_pred CCCCCCeeeccCccCCccCCccccCCCCCCeEEcccCccccccchhccCCCCCCEEeccCCcCccccCccccCCCCCCEE
Q 047332 205 NLNSLSTMDLSQNQFSGSIPLSLGNLSNLGILYLYSNSFSGSIPSIIGNLKSLLQLDLSENQLIGSIPLSFGNLSRLTLM 284 (614)
Q Consensus 205 ~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L 284 (614)
.+++++.|++.++.+.. ++ .+..+++|++|++++|.+++. +. +..+++|++|++++|.+.+..+ +..+++|++|
T Consensus 44 ~l~~l~~L~l~~~~i~~-l~-~~~~l~~L~~L~Ls~n~l~~~-~~-~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L 117 (466)
T 1o6v_A 44 DLDQVTTLQADRLGIKS-ID-GVEYLNNLTQINFSNNQLTDI-TP-LKNLTKLVDILMNNNQIADITP--LANLTNLTGL 117 (466)
T ss_dssp HHHTCCEEECCSSCCCC-CT-TGGGCTTCCEEECCSSCCCCC-GG-GTTCTTCCEEECCSSCCCCCGG--GTTCTTCCEE
T ss_pred HhccccEEecCCCCCcc-Cc-chhhhcCCCEEECCCCccCCc-hh-hhccccCCEEECCCCccccChh--hcCCCCCCEE
Confidence 35688899998888873 44 477788899999999888754 33 8888899999999988875544 8888899999
Q ss_pred ecCCCcccccCCccCCCCCCCCEeecCCCcccccCCccccCCCCCCEEEccCCcccccCcccccCCCCCcEEEcccccCC
Q 047332 285 SLFNNLLSGSLPPILGNLKSLSALGLHINQLSGVIPSSIGNLSSLRALYLYNNGLCGFVPEEIRYLKSLSELELCKNHLS 364 (614)
Q Consensus 285 ~L~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~ 364 (614)
++++|.+++.. . +..+++|++|++++|.+.+. + .+..+++|+.|++. +.+.+.. .+..+++|++|++++|.++
T Consensus 118 ~L~~n~l~~~~-~-~~~l~~L~~L~l~~n~l~~~-~-~~~~l~~L~~L~l~-~~~~~~~--~~~~l~~L~~L~l~~n~l~ 190 (466)
T 1o6v_A 118 TLFNNQITDID-P-LKNLTNLNRLELSSNTISDI-S-ALSGLTSLQQLSFG-NQVTDLK--PLANLTTLERLDISSNKVS 190 (466)
T ss_dssp ECCSSCCCCCG-G-GTTCTTCSEEEEEEEEECCC-G-GGTTCTTCSEEEEE-ESCCCCG--GGTTCTTCCEEECCSSCCC
T ss_pred ECCCCCCCCCh-H-HcCCCCCCEEECCCCccCCC-h-hhccCCcccEeecC-CcccCch--hhccCCCCCEEECcCCcCC
Confidence 99998887543 2 78888899999988888753 3 47788888888886 4444432 3778888888888888887
Q ss_pred ccCCccccCCCCCCEEECcCCCCCCCCCccccCCCCCcEEEccCCcCCcccccccCCCCCCCEEECcCcccccccCcccc
Q 047332 365 GVIPHSIGNLTGLLLLNMCENHLSGPIPKSFKNLTSVERVLLNQNNLSGKVYEAFGDHPNLTFLNLSQNNFCGEISFNWR 444 (614)
Q Consensus 365 ~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~ 444 (614)
+. ..+..+++|+.|++++|.+.+..+ +..+++|++|++++|.+.+. ..+..+++|+.|++++|.+.+..+ +.
T Consensus 191 ~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~ 262 (466)
T 1o6v_A 191 DI--SVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLAP--LS 262 (466)
T ss_dssp CC--GGGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GT
T ss_pred CC--hhhccCCCCCEEEecCCccccccc--ccccCCCCEEECCCCCcccc--hhhhcCCCCCEEECCCCccccchh--hh
Confidence 54 347778888888888888876544 66788888888888887753 456678888888888888776544 67
Q ss_pred CCCCCcEEEcccCcccccCCccCCCCCCCCEEeCCCCcCccccchhccCCCCCCEeeccCCccccCccccccCCCCCCEE
Q 047332 445 NFPKLGTFIVSVNNISGSIPPEIGDSPKLQVLDLSSNSIVGEIPVQLGKLFSLNKLILNLNQLSGGMPLELGSLTELQYL 524 (614)
Q Consensus 445 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L 524 (614)
.+++|+.|++++|.+++..+ +..+++|++|++++|.+.+..+ +..+++|++|++++|.+++..| +..+++|+.|
T Consensus 263 ~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L 336 (466)
T 1o6v_A 263 GLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRL 336 (466)
T ss_dssp TCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCCGG--GGGCTTCSEEECCSSCCSCCGG--GGGCTTCCEE
T ss_pred cCCCCCEEECCCCccCcccc--ccCCCccCeEEcCCCcccCchh--hcCCCCCCEEECcCCcCCCchh--hccCccCCEe
Confidence 78888888888888775433 6677888888888888775433 6778888888888888876554 6677888888
Q ss_pred eCCCCcCcccCCccccccCCCCEEeCCCCcCCcCCChhhhcCCCCCeeeCCCCCCCC
Q 047332 525 DLSANKLKSSIPKSIGNLLRLRYLDLSNNQFGHKIPIELEKLIHLSELDLSYNFLGE 581 (614)
Q Consensus 525 ~ls~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~L~~n~~~~ 581 (614)
++++|.+.+. ..+..+++|+.|++++|++++..| +..+++|+.|++++|++.+
T Consensus 337 ~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~~~~ 389 (466)
T 1o6v_A 337 FFYNNKVSDV--SSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTN 389 (466)
T ss_dssp ECCSSCCCCC--GGGTTCTTCCEEECCSSCCCBCGG--GTTCTTCCEEECCCEEEEC
T ss_pred ECCCCccCCc--hhhccCCCCCEEeCCCCccCccch--hhcCCCCCEEeccCCcccC
Confidence 8888887754 467778888888888888877766 6778888888888887766
No 31
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=100.00 E-value=2.2e-36 Score=314.91 Aligned_cols=231 Identities=16% Similarity=0.189 Sum_probs=136.1
Q ss_pred CCCCccccCCCCCcEEEeccccCCCCCCcccCCCCCCcEEEeecCCCcccCCccccCCCCCCeeeccCccCCccCCcccc
Q 047332 149 GSIPPEIGQLSLINVLALCHNNLYGSIPSSLGNLSNLANFYFNNNSLFDSIPLVLGNLNSLSTMDLSQNQFSGSIPLSLG 228 (614)
Q Consensus 149 ~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~ 228 (614)
+..+..++++++|++|++++|.+++. | .+..+++|++|++++|.+.+. + ++.+++|++|++++|.+++. + ++
T Consensus 32 ~~~~~~~~~l~~L~~L~Ls~n~l~~~-~-~l~~l~~L~~L~Ls~n~l~~~-~--~~~l~~L~~L~Ls~N~l~~~-~--~~ 103 (457)
T 3bz5_A 32 ATDTISEEQLATLTSLDCHNSSITDM-T-GIEKLTGLTKLICTSNNITTL-D--LSQNTNLTYLACDSNKLTNL-D--VT 103 (457)
T ss_dssp TTSEEEHHHHTTCCEEECCSSCCCCC-T-TGGGCTTCSEEECCSSCCSCC-C--CTTCTTCSEEECCSSCCSCC-C--CT
T ss_pred cccccChhHcCCCCEEEccCCCcccC-h-hhcccCCCCEEEccCCcCCeE-c--cccCCCCCEEECcCCCCcee-e--cC
Confidence 34445667777788888887777753 4 467777777777777777663 2 66677777777777777643 2 66
Q ss_pred CCCCCCeEEcccCccccccchhccCCCCCCEEeccCCcCccccCccccCCCCCCEEecCCCcccccCCccCCCCCCCCEe
Q 047332 229 NLSNLGILYLYSNSFSGSIPSIIGNLKSLLQLDLSENQLIGSIPLSFGNLSRLTLMSLFNNLLSGSLPPILGNLKSLSAL 308 (614)
Q Consensus 229 ~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L 308 (614)
.+++|++|++++|.+++ ++ ++.+++|++|++++|.+.+. .+..+++|++|++++|...+.+ .+..+++|++|
T Consensus 104 ~l~~L~~L~L~~N~l~~-l~--~~~l~~L~~L~l~~N~l~~l---~l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L 175 (457)
T 3bz5_A 104 PLTKLTYLNCDTNKLTK-LD--VSQNPLLTYLNCARNTLTEI---DVSHNTQLTELDCHLNKKITKL--DVTPQTQLTTL 175 (457)
T ss_dssp TCTTCCEEECCSSCCSC-CC--CTTCTTCCEEECTTSCCSCC---CCTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEE
T ss_pred CCCcCCEEECCCCcCCe-ec--CCCCCcCCEEECCCCcccee---ccccCCcCCEEECCCCCccccc--ccccCCcCCEE
Confidence 66677777777776664 33 56666677777766666542 2556666666666666443333 24555666666
Q ss_pred ecCCCcccccCCccccCCCCCCEEEccCCcccccCcccccCCCCCcEEEcccccCCccCCccccCCCCCCEEECcCCCCC
Q 047332 309 GLHINQLSGVIPSSIGNLSSLRALYLYNNGLCGFVPEEIRYLKSLSELELCKNHLSGVIPHSIGNLTGLLLLNMCENHLS 388 (614)
Q Consensus 309 ~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~ls~n~l~ 388 (614)
++++|++++ ++ +..+++|+.|++++|.+.+. .+..+++|++|++++|.+++ +| +..+++|+.|++++|.++
T Consensus 176 ~ls~n~l~~-l~--l~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~-ip--~~~l~~L~~L~l~~N~l~ 246 (457)
T 3bz5_A 176 DCSFNKITE-LD--VSQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTE-ID--VTPLTQLTYFDCSVNPLT 246 (457)
T ss_dssp ECCSSCCCC-CC--CTTCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSCCS
T ss_pred ECCCCccce-ec--cccCCCCCEEECcCCcCCee---ccccCCCCCEEECcCCcccc-cC--ccccCCCCEEEeeCCcCC
Confidence 666666554 22 44555556666655555543 24445555555555555554 23 444555555555555554
Q ss_pred CCCCccccCCCCCcEEEcc
Q 047332 389 GPIPKSFKNLTSVERVLLN 407 (614)
Q Consensus 389 ~~~~~~~~~~~~L~~L~l~ 407 (614)
+.. +..+++|+.|+++
T Consensus 247 ~~~---~~~l~~L~~L~l~ 262 (457)
T 3bz5_A 247 ELD---VSTLSKLTTLHCI 262 (457)
T ss_dssp CCC---CTTCTTCCEEECT
T ss_pred CcC---HHHCCCCCEEecc
Confidence 432 2234444444443
No 32
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=100.00 E-value=5.2e-36 Score=312.06 Aligned_cols=357 Identities=18% Similarity=0.166 Sum_probs=183.9
Q ss_pred cccCCCCCcEEECCCCCCCccCcccccCCCCCCEEeCCCCCCCCCCCcCCCCCCCCCEEEcccccCCCCCCccccCCCCC
Q 047332 82 AFSSFPHLVQLNLSFNIFFGIIPPQIGNLSKLQYLDLGSNQLSGVIPPEIGHLNQLRILYFDVNQLHGSIPPEIGQLSLI 161 (614)
Q Consensus 82 ~~~~l~~L~~L~Ls~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L 161 (614)
.++.+++|++|++++|.+++. | .+..+++|++|++++|.+++. | ++.+++|++|++++|.+++. + ++++++|
T Consensus 37 ~~~~l~~L~~L~Ls~n~l~~~-~-~l~~l~~L~~L~Ls~n~l~~~-~--~~~l~~L~~L~Ls~N~l~~~-~--~~~l~~L 108 (457)
T 3bz5_A 37 SEEQLATLTSLDCHNSSITDM-T-GIEKLTGLTKLICTSNNITTL-D--LSQNTNLTYLACDSNKLTNL-D--VTPLTKL 108 (457)
T ss_dssp EHHHHTTCCEEECCSSCCCCC-T-TGGGCTTCSEEECCSSCCSCC-C--CTTCTTCSEEECCSSCCSCC-C--CTTCTTC
T ss_pred ChhHcCCCCEEEccCCCcccC-h-hhcccCCCCEEEccCCcCCeE-c--cccCCCCCEEECcCCCCcee-e--cCCCCcC
Confidence 566677777777777777663 4 567777777777777777653 3 66777777777777776643 2 6666777
Q ss_pred cEEEeccccCCCCCCcccCCCCCCcEEEeecCCCcccCCccccCCCCCCeeeccCccCCccCCccccCCCCCCeEEcccC
Q 047332 162 NVLALCHNNLYGSIPSSLGNLSNLANFYFNNNSLFDSIPLVLGNLNSLSTMDLSQNQFSGSIPLSLGNLSNLGILYLYSN 241 (614)
Q Consensus 162 ~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~ 241 (614)
++|++++|.+++. + ++.+++|++|++++|.+.+. .++.+++|++|++++|...+.+ .+..+++|++|++++|
T Consensus 109 ~~L~L~~N~l~~l-~--~~~l~~L~~L~l~~N~l~~l---~l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n 180 (457)
T 3bz5_A 109 TYLNCDTNKLTKL-D--VSQNPLLTYLNCARNTLTEI---DVSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDCSFN 180 (457)
T ss_dssp CEEECCSSCCSCC-C--CTTCTTCCEEECTTSCCSCC---CCTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEECCSS
T ss_pred CEEECCCCcCCee-c--CCCCCcCCEEECCCCcccee---ccccCCcCCEEECCCCCccccc--ccccCCcCCEEECCCC
Confidence 7777777766642 2 55566666666666655542 2445555555555555332222 2334444444444444
Q ss_pred ccccccchhccCCCCCCEEeccCCcCccccCccccCCCCCCEEecCCCcccccCCccCCCCCCCCEeecCCCcccccCCc
Q 047332 242 SFSGSIPSIIGNLKSLLQLDLSENQLIGSIPLSFGNLSRLTLMSLFNNLLSGSLPPILGNLKSLSALGLHINQLSGVIPS 321 (614)
Q Consensus 242 ~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~ 321 (614)
.+++ +| +..+++|+.|++++|.+++. .+..+++|++|++++|++++ +|
T Consensus 181 ~l~~-l~--------------------------l~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~-ip- 228 (457)
T 3bz5_A 181 KITE-LD--------------------------VSQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTE-ID- 228 (457)
T ss_dssp CCCC-CC--------------------------CTTCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSC-CC-
T ss_pred ccce-ec--------------------------cccCCCCCEEECcCCcCCee---ccccCCCCCEEECcCCcccc-cC-
Confidence 4442 22 33344444444444444332 13444444444444444443 22
Q ss_pred cccCCCCCCEEEccCCcccccCcccccCCCCCcEEEcccccCCccCCccccCCCCCCEEECcCCCCCCCCCccccCCCCC
Q 047332 322 SIGNLSSLRALYLYNNGLCGFVPEEIRYLKSLSELELCKNHLSGVIPHSIGNLTGLLLLNMCENHLSGPIPKSFKNLTSV 401 (614)
Q Consensus 322 ~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~L 401 (614)
+..+++|+.|++++|++.+.. +..+++|+.|+++.| +|+.+++++|.+.+.+| +..+++|
T Consensus 229 -~~~l~~L~~L~l~~N~l~~~~---~~~l~~L~~L~l~~n--------------~L~~L~l~~n~~~~~~~--~~~l~~L 288 (457)
T 3bz5_A 229 -VTPLTQLTYFDCSVNPLTELD---VSTLSKLTTLHCIQT--------------DLLEIDLTHNTQLIYFQ--AEGCRKI 288 (457)
T ss_dssp -CTTCTTCSEEECCSSCCSCCC---CTTCTTCCEEECTTC--------------CCSCCCCTTCTTCCEEE--CTTCTTC
T ss_pred -ccccCCCCEEEeeCCcCCCcC---HHHCCCCCEEeccCC--------------CCCEEECCCCccCCccc--ccccccC
Confidence 344444444555444444421 223344444444332 23334444444433333 2344555
Q ss_pred cEEEccCCcCCcccccccCCCCCCCEEECcCcccccccCccccCCCCCcEEEcccCcccccCCccCCCCCCCCEEeCCCC
Q 047332 402 ERVLLNQNNLSGKVYEAFGDHPNLTFLNLSQNNFCGEISFNWRNFPKLGTFIVSVNNISGSIPPEIGDSPKLQVLDLSSN 481 (614)
Q Consensus 402 ~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~ 481 (614)
+.|++++|...+..+. ..+.|+.|++++ +++|+.|++++|++++. + +..+++|+.|++++|
T Consensus 289 ~~L~Ls~n~~l~~l~~---~~~~L~~L~l~~-------------~~~L~~L~L~~N~l~~l-~--l~~l~~L~~L~l~~N 349 (457)
T 3bz5_A 289 KELDVTHNTQLYLLDC---QAAGITELDLSQ-------------NPKLVYLYLNNTELTEL-D--VSHNTKLKSLSCVNA 349 (457)
T ss_dssp CCCCCTTCTTCCEEEC---TTCCCSCCCCTT-------------CTTCCEEECTTCCCSCC-C--CTTCTTCSEEECCSS
T ss_pred CEEECCCCcccceecc---CCCcceEechhh-------------cccCCEEECCCCccccc-c--cccCCcCcEEECCCC
Confidence 5555555544333332 223333333332 24555555655555542 1 555666666666666
Q ss_pred cCccccchhccCCCCCCEeeccCCccccCccccccCCCCCCEEeCCCCcCcccCCcc
Q 047332 482 SIVGEIPVQLGKLFSLNKLILNLNQLSGGMPLELGSLTELQYLDLSANKLKSSIPKS 538 (614)
Q Consensus 482 ~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~ 538 (614)
++.+ ++.|..|.+++|.+.|. ..+..|+.+++++|.++|.+|..
T Consensus 350 ~l~~--------l~~L~~L~l~~n~l~g~-----~~~~~l~~l~l~~N~l~g~ip~~ 393 (457)
T 3bz5_A 350 HIQD--------FSSVGKIPALNNNFEAE-----GQTITMPKETLTNNSLTIAVSPD 393 (457)
T ss_dssp CCCB--------CTTGGGSSGGGTSEEEE-----EEEEECCCBCCBTTBEEEECCTT
T ss_pred CCCC--------ccccccccccCCcEEec-----ceeeecCccccccCcEEEEcChh
Confidence 6553 23455555666655543 22334555566666666665543
No 33
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=100.00 E-value=1.2e-35 Score=312.07 Aligned_cols=346 Identities=26% Similarity=0.386 Sum_probs=296.8
Q ss_pred CCCCCcEEEeecCCCcccCCccccCCCCCCeeeccCccCCccCCccccCCCCCCeEEcccCccccccchhccCCCCCCEE
Q 047332 181 NLSNLANFYFNNNSLFDSIPLVLGNLNSLSTMDLSQNQFSGSIPLSLGNLSNLGILYLYSNSFSGSIPSIIGNLKSLLQL 260 (614)
Q Consensus 181 ~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L 260 (614)
.+++++.|++.++.+.. +| .+..+++|++|++++|.+++..+ +..+++|++|++++|.+.+..+ +..+++|++|
T Consensus 44 ~l~~l~~L~l~~~~i~~-l~-~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L 117 (466)
T 1o6v_A 44 DLDQVTTLQADRLGIKS-ID-GVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGL 117 (466)
T ss_dssp HHHTCCEEECCSSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG--GTTCTTCCEE
T ss_pred HhccccEEecCCCCCcc-Cc-chhhhcCCCEEECCCCccCCchh--hhccccCCEEECCCCccccChh--hcCCCCCCEE
Confidence 46789999999998865 34 47889999999999999985543 8899999999999999985544 8899999999
Q ss_pred eccCCcCccccCccccCCCCCCEEecCCCcccccCCccCCCCCCCCEeecCCCcccccCCccccCCCCCCEEEccCCccc
Q 047332 261 DLSENQLIGSIPLSFGNLSRLTLMSLFNNLLSGSLPPILGNLKSLSALGLHINQLSGVIPSSIGNLSSLRALYLYNNGLC 340 (614)
Q Consensus 261 ~L~~n~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~~~ 340 (614)
++++|.+.+..+ +..+++|++|++++|.+.+ ++ .+..+++|++|+++ +.+.+. ..+..+++|+.|++++|.+.
T Consensus 118 ~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~-~~-~~~~l~~L~~L~l~-~~~~~~--~~~~~l~~L~~L~l~~n~l~ 190 (466)
T 1o6v_A 118 TLFNNQITDIDP--LKNLTNLNRLELSSNTISD-IS-ALSGLTSLQQLSFG-NQVTDL--KPLANLTTLERLDISSNKVS 190 (466)
T ss_dssp ECCSSCCCCCGG--GTTCTTCSEEEEEEEEECC-CG-GGTTCTTCSEEEEE-ESCCCC--GGGTTCTTCCEEECCSSCCC
T ss_pred ECCCCCCCCChH--HcCCCCCCEEECCCCccCC-Ch-hhccCCcccEeecC-CcccCc--hhhccCCCCCEEECcCCcCC
Confidence 999999885533 8899999999999999885 33 48899999999996 455433 23788999999999999988
Q ss_pred ccCcccccCCCCCcEEEcccccCCccCCccccCCCCCCEEECcCCCCCCCCCccccCCCCCcEEEccCCcCCcccccccC
Q 047332 341 GFVPEEIRYLKSLSELELCKNHLSGVIPHSIGNLTGLLLLNMCENHLSGPIPKSFKNLTSVERVLLNQNNLSGKVYEAFG 420 (614)
Q Consensus 341 ~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~ 420 (614)
+. ..+..+++|++|++++|.+++..+ +..+++|+.|++++|.+++. ..+..+++|+.|++++|.+.+..+ +.
T Consensus 191 ~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~ 262 (466)
T 1o6v_A 191 DI--SVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLAP--LS 262 (466)
T ss_dssp CC--GGGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GT
T ss_pred CC--hhhccCCCCCEEEecCCccccccc--ccccCCCCEEECCCCCcccc--hhhhcCCCCCEEECCCCccccchh--hh
Confidence 75 347889999999999999987655 67789999999999998864 568889999999999999986654 88
Q ss_pred CCCCCCEEECcCcccccccCccccCCCCCcEEEcccCcccccCCccCCCCCCCCEEeCCCCcCccccchhccCCCCCCEe
Q 047332 421 DHPNLTFLNLSQNNFCGEISFNWRNFPKLGTFIVSVNNISGSIPPEIGDSPKLQVLDLSSNSIVGEIPVQLGKLFSLNKL 500 (614)
Q Consensus 421 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L 500 (614)
.+++|++|++++|.+.+..+ +..+++|+.|++++|++.+..+ +..+++|+.|++++|.+.+..| +..+++|++|
T Consensus 263 ~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L 336 (466)
T 1o6v_A 263 GLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRL 336 (466)
T ss_dssp TCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCCGG--GGGCTTCSEEECCSSCCSCCGG--GGGCTTCCEE
T ss_pred cCCCCCEEECCCCccCcccc--ccCCCccCeEEcCCCcccCchh--hcCCCCCCEEECcCCcCCCchh--hccCccCCEe
Confidence 99999999999999986544 7789999999999999986543 7789999999999999987665 7889999999
Q ss_pred eccCCccccCccccccCCCCCCEEeCCCCcCcccCCccccccCCCCEEeCCCCcCCc
Q 047332 501 ILNLNQLSGGMPLELGSLTELQYLDLSANKLKSSIPKSIGNLLRLRYLDLSNNQFGH 557 (614)
Q Consensus 501 ~l~~n~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~ 557 (614)
++++|.+++. ..+..+++|+.|++++|.+.+..| +..+++|+.|++++|++++
T Consensus 337 ~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~~~~ 389 (466)
T 1o6v_A 337 FFYNNKVSDV--SSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTN 389 (466)
T ss_dssp ECCSSCCCCC--GGGTTCTTCCEEECCSSCCCBCGG--GTTCTTCCEEECCCEEEEC
T ss_pred ECCCCccCCc--hhhccCCCCCEEeCCCCccCccch--hhcCCCCCEEeccCCcccC
Confidence 9999999864 478899999999999999997766 8899999999999999976
No 34
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=100.00 E-value=8.9e-36 Score=314.51 Aligned_cols=323 Identities=22% Similarity=0.223 Sum_probs=273.1
Q ss_pred CCEEeccCCcCccccCccccCCCCCCEEecCCCcccccCCccCCCCCCCCEeecCCCcccccCCccccCCCCCCEEEccC
Q 047332 257 LLQLDLSENQLIGSIPLSFGNLSRLTLMSLFNNLLSGSLPPILGNLKSLSALGLHINQLSGVIPSSIGNLSSLRALYLYN 336 (614)
Q Consensus 257 L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~ 336 (614)
-+.++.+++.+. .+|..+. +.++.|++++|.+++..+..|..+++|++|++++|.+++..|..|..+++|+.|++++
T Consensus 13 ~~~v~c~~~~l~-~ip~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~ 89 (477)
T 2id5_A 13 DRAVLCHRKRFV-AVPEGIP--TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRS 89 (477)
T ss_dssp TTEEECCSCCCS-SCCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CCEEEeCCCCcC-cCCCCCC--CCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCC
Confidence 357888887776 5665543 6899999999999988788899999999999999999988888899999999999999
Q ss_pred CcccccCcccccCCCCCcEEEcccccCCccCCccccCCCCCCEEECcCCCCCCCCCccccCCCCCcEEEccCCcCCcccc
Q 047332 337 NGLCGFVPEEIRYLKSLSELELCKNHLSGVIPHSIGNLTGLLLLNMCENHLSGPIPKSFKNLTSVERVLLNQNNLSGKVY 416 (614)
Q Consensus 337 n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~ 416 (614)
|.+.+..+..+..+++|++|++++|.+++..+..|..+++|+.|++++|.+++..+..|..+++|++|++++|.+++..+
T Consensus 90 n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 169 (477)
T 2id5_A 90 NRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPT 169 (477)
T ss_dssp SCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCH
T ss_pred CcCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccCh
Confidence 99988777778889999999999999988888888889999999999999888888888899999999999998887777
Q ss_pred cccCCCCCCCEEECcCcccccccCccccCCCCCcEEEcccCcccccCCccCCCCCCCCEEeCCCCcCccccchhccCCCC
Q 047332 417 EAFGDHPNLTFLNLSQNNFCGEISFNWRNFPKLGTFIVSVNNISGSIPPEIGDSPKLQVLDLSSNSIVGEIPVQLGKLFS 496 (614)
Q Consensus 417 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 496 (614)
..+..+++|+.|++++|.+.+..+..+..+++|+.|++++|...+.++.......+|++|++++|.+++..+..+..+++
T Consensus 170 ~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~ 249 (477)
T 2id5_A 170 EALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVY 249 (477)
T ss_dssp HHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTT
T ss_pred hHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhcCccc
Confidence 77888899999999999888877777888888999999888887777776666678888888888887544467788888
Q ss_pred CCEeeccCCccccCccccccCCCCCCEEeCCCCcCcccCCccccccCCCCEEeCCCCcCCcCCChhhhcCCCCCeeeCCC
Q 047332 497 LNKLILNLNQLSGGMPLELGSLTELQYLDLSANKLKSSIPKSIGNLLRLRYLDLSNNQFGHKIPIELEKLIHLSELDLSY 576 (614)
Q Consensus 497 L~~L~l~~n~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~L~~ 576 (614)
|+.|++++|.+.+..+..|..+++|+.|++++|.+.+..|..|..+++|+.|++++|++++..+..|..+++|++|+|++
T Consensus 250 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~ 329 (477)
T 2id5_A 250 LRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDS 329 (477)
T ss_dssp CCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCS
T ss_pred cCeeECCCCcCCccChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEccC
Confidence 88888888888877777788888888888888888888888888888888888888888777777778888888888888
Q ss_pred CCCCCC
Q 047332 577 NFLGEE 582 (614)
Q Consensus 577 n~~~~~ 582 (614)
|++...
T Consensus 330 N~l~c~ 335 (477)
T 2id5_A 330 NPLACD 335 (477)
T ss_dssp SCEECS
T ss_pred CCccCc
Confidence 887543
No 35
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=100.00 E-value=1.6e-35 Score=312.51 Aligned_cols=323 Identities=21% Similarity=0.215 Sum_probs=294.4
Q ss_pred CeEEcccCccccccchhccCCCCCCEEeccCCcCccccCccccCCCCCCEEecCCCcccccCCccCCCCCCCCEeecCCC
Q 047332 234 GILYLYSNSFSGSIPSIIGNLKSLLQLDLSENQLIGSIPLSFGNLSRLTLMSLFNNLLSGSLPPILGNLKSLSALGLHIN 313 (614)
Q Consensus 234 ~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~n 313 (614)
+.++.+++.++ .+|..+. +++++|++++|.+.+..+..|..+++|++|++++|.+++..|..|..+++|++|++++|
T Consensus 14 ~~v~c~~~~l~-~ip~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n 90 (477)
T 2id5_A 14 RAVLCHRKRFV-AVPEGIP--TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSN 90 (477)
T ss_dssp TEEECCSCCCS-SCCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred CEEEeCCCCcC-cCCCCCC--CCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCC
Confidence 56777777776 6676543 68999999999999888889999999999999999999888999999999999999999
Q ss_pred cccccCCccccCCCCCCEEEccCCcccccCcccccCCCCCcEEEcccccCCccCCccccCCCCCCEEECcCCCCCCCCCc
Q 047332 314 QLSGVIPSSIGNLSSLRALYLYNNGLCGFVPEEIRYLKSLSELELCKNHLSGVIPHSIGNLTGLLLLNMCENHLSGPIPK 393 (614)
Q Consensus 314 ~l~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~ 393 (614)
.+++..+..|..+++|+.|++++|.+.+..+..+..+++|++|++++|.+++..+..|..+++|+.|++++|.+++..+.
T Consensus 91 ~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~ 170 (477)
T 2id5_A 91 RLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTE 170 (477)
T ss_dssp CCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHH
T ss_pred cCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChh
Confidence 99977667789999999999999999999899999999999999999999988888999999999999999999988777
Q ss_pred cccCCCCCcEEEccCCcCCcccccccCCCCCCCEEECcCcccccccCccccCCCCCcEEEcccCcccccCCccCCCCCCC
Q 047332 394 SFKNLTSVERVLLNQNNLSGKVYEAFGDHPNLTFLNLSQNNFCGEISFNWRNFPKLGTFIVSVNNISGSIPPEIGDSPKL 473 (614)
Q Consensus 394 ~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L 473 (614)
.+..+++|+.|++++|.+.+..+..+..+++|++|++++|...+.++.......+|+.|++++|.++...+..+..+++|
T Consensus 171 ~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L 250 (477)
T 2id5_A 171 ALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYL 250 (477)
T ss_dssp HHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTC
T ss_pred HhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhcCcccc
Confidence 89999999999999999998888889999999999999999888877776667799999999999985544678899999
Q ss_pred CEEeCCCCcCccccchhccCCCCCCEeeccCCccccCccccccCCCCCCEEeCCCCcCcccCCccccccCCCCEEeCCCC
Q 047332 474 QVLDLSSNSIVGEIPVQLGKLFSLNKLILNLNQLSGGMPLELGSLTELQYLDLSANKLKSSIPKSIGNLLRLRYLDLSNN 553 (614)
Q Consensus 474 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~l~~n 553 (614)
++|++++|.+.+..+..+..+++|++|++++|.+.+..|..|..+++|+.|++++|.+++..+..|..+++|+.|++++|
T Consensus 251 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N 330 (477)
T 2id5_A 251 RFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSN 330 (477)
T ss_dssp CEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSS
T ss_pred CeeECCCCcCCccChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEccCC
Confidence 99999999999777788999999999999999999888999999999999999999999877778899999999999999
Q ss_pred cCCcCC
Q 047332 554 QFGHKI 559 (614)
Q Consensus 554 ~~~~~~ 559 (614)
++....
T Consensus 331 ~l~c~c 336 (477)
T 2id5_A 331 PLACDC 336 (477)
T ss_dssp CEECSG
T ss_pred CccCcc
Confidence 997654
No 36
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=100.00 E-value=6.2e-34 Score=292.15 Aligned_cols=290 Identities=20% Similarity=0.215 Sum_probs=194.2
Q ss_pred cCCCCCcEEECCCCCCCccCcccccCCCCCCEEeCCCCCCCCCCCcCCCCCCCCCEEEcccccCCCCCCccccCCCCCcE
Q 047332 84 SSFPHLVQLNLSFNIFFGIIPPQIGNLSKLQYLDLGSNQLSGVIPPEIGHLNQLRILYFDVNQLHGSIPPEIGQLSLINV 163 (614)
Q Consensus 84 ~~l~~L~~L~Ls~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~ 163 (614)
..++++++|+++++.++...+..|..+++|++|++++|.+.+..+..|+.+++|++|++++|.+.+..|..+.++++|++
T Consensus 42 ~~l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 121 (390)
T 3o6n_A 42 ITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTV 121 (390)
T ss_dssp GGGCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred cccCCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCE
Confidence 35689999999999888766666889999999999999999777778999999999999999998777788899999999
Q ss_pred EEeccccCCCCCCcccCCCCCCcEEEeecCCCcccCCccccCCCCCCeeeccCccCCccCCccccCCCCCCeEEcccCcc
Q 047332 164 LALCHNNLYGSIPSSLGNLSNLANFYFNNNSLFDSIPLVLGNLNSLSTMDLSQNQFSGSIPLSLGNLSNLGILYLYSNSF 243 (614)
Q Consensus 164 L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~ 243 (614)
|++++|.+++..+..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+++. .+..+++|++|++++|.+
T Consensus 122 L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~---~~~~l~~L~~L~l~~n~l 198 (390)
T 3o6n_A 122 LVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV---DLSLIPSLFHANVSYNLL 198 (390)
T ss_dssp EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBC---CGGGCTTCSEEECCSSCC
T ss_pred EECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCcc---ccccccccceeecccccc
Confidence 99999988855445568888888888888888877777788888888888888887743 245566777777777766
Q ss_pred ccccchhccCCCCCCEEeccCCcCccccCccccCCCCCCEEecCCCcccccCCccCCCCCCCCEeecCCCcccccCCccc
Q 047332 244 SGSIPSIIGNLKSLLQLDLSENQLIGSIPLSFGNLSRLTLMSLFNNLLSGSLPPILGNLKSLSALGLHINQLSGVIPSSI 323 (614)
Q Consensus 244 ~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l 323 (614)
++ +...++|++|++++|.+... |.. ..++|+.|++++|.+++. ..+..+++|++|++++|.+++..+..+
T Consensus 199 ~~-----~~~~~~L~~L~l~~n~l~~~-~~~--~~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~Ls~n~l~~~~~~~~ 268 (390)
T 3o6n_A 199 ST-----LAIPIAVEELDASHNSINVV-RGP--VNVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHPF 268 (390)
T ss_dssp SE-----EECCSSCSEEECCSSCCCEE-ECC--CCSSCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEESGGG
T ss_pred cc-----cCCCCcceEEECCCCeeeec-ccc--ccccccEEECCCCCCccc--HHHcCCCCccEEECCCCcCCCcChhHc
Confidence 53 22335677777777666533 221 235566666666665532 344555555555555555555445555
Q ss_pred cCCCCCCEEEccCCcccccCcccccCCCCCcEEEcccccCCccCCccccCCCCCCEEECcCCCCC
Q 047332 324 GNLSSLRALYLYNNGLCGFVPEEIRYLKSLSELELCKNHLSGVIPHSIGNLTGLLLLNMCENHLS 388 (614)
Q Consensus 324 ~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~ls~n~l~ 388 (614)
..+++|+.|++++|++.+. +..+..+++|++|++++|.++ .+|..+..+++|+.|++++|.++
T Consensus 269 ~~l~~L~~L~L~~n~l~~~-~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~L~~N~i~ 331 (390)
T 3o6n_A 269 VKMQRLERLYISNNRLVAL-NLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIV 331 (390)
T ss_dssp TTCSSCCEEECCSSCCCEE-ECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCC
T ss_pred cccccCCEEECCCCcCccc-CcccCCCCCCCEEECCCCcce-ecCccccccCcCCEEECCCCccc
Confidence 5555555555555555442 223334444555555544444 22333333444444444444443
No 37
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=100.00 E-value=2.6e-33 Score=303.10 Aligned_cols=289 Identities=20% Similarity=0.219 Sum_probs=201.5
Q ss_pred CCCCCcEEECCCCCCCccCcccccCCCCCCEEeCCCCCCCCCCCcCCCCCCCCCEEEcccccCCCCCCccccCCCCCcEE
Q 047332 85 SFPHLVQLNLSFNIFFGIIPPQIGNLSKLQYLDLGSNQLSGVIPPEIGHLNQLRILYFDVNQLHGSIPPEIGQLSLINVL 164 (614)
Q Consensus 85 ~l~~L~~L~Ls~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L 164 (614)
.+++++.++++++.+....+..|..+++|++|++++|.+++..|..|+.+++|++|++++|.+.+..|..|+++++|++|
T Consensus 49 ~l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 128 (597)
T 3oja_B 49 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVL 128 (597)
T ss_dssp GGCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred cCCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEE
Confidence 46789999999998888766778899999999999999998878899999999999999999988777788999999999
Q ss_pred EeccccCCCCCCcccCCCCCCcEEEeecCCCcccCCccccCCCCCCeeeccCccCCccCCccccCCCCCCeEEcccCccc
Q 047332 165 ALCHNNLYGSIPSSLGNLSNLANFYFNNNSLFDSIPLVLGNLNSLSTMDLSQNQFSGSIPLSLGNLSNLGILYLYSNSFS 244 (614)
Q Consensus 165 ~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~ 244 (614)
++++|.+++..+..++.+++|++|++++|.+.+..|..++.+++|++|++++|.+++. .+..+++|+.|++++|.+.
T Consensus 129 ~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~---~~~~l~~L~~L~l~~n~l~ 205 (597)
T 3oja_B 129 VLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV---DLSLIPSLFHANVSYNLLS 205 (597)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBC---CGGGCTTCSEEECCSSCCS
T ss_pred EeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCc---ChhhhhhhhhhhcccCccc
Confidence 9999998866666678888999999998888887777788888888888888887753 2455677777777777665
Q ss_pred cccchhccCCCCCCEEeccCCcCccccCccccCCCCCCEEecCCCcccccCCccCCCCCCCCEeecCCCcccccCCcccc
Q 047332 245 GSIPSIIGNLKSLLQLDLSENQLIGSIPLSFGNLSRLTLMSLFNNLLSGSLPPILGNLKSLSALGLHINQLSGVIPSSIG 324 (614)
Q Consensus 245 ~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~ 324 (614)
+ +...++|+.|++++|.+....+. + .++|+.|++++|.+++. ..+..+++|+.|++++|.+.+..|..+.
T Consensus 206 ~-----l~~~~~L~~L~ls~n~l~~~~~~-~--~~~L~~L~L~~n~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~ 275 (597)
T 3oja_B 206 T-----LAIPIAVEELDASHNSINVVRGP-V--NVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHPFV 275 (597)
T ss_dssp E-----EECCTTCSEEECCSSCCCEEECS-C--CSCCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEESGGGT
T ss_pred c-----ccCCchhheeeccCCcccccccc-c--CCCCCEEECCCCCCCCC--hhhccCCCCCEEECCCCccCCCCHHHhc
Confidence 3 23345677777777766533221 1 24566666666666542 4455555666666666655555555555
Q ss_pred CCCCCCEEEccCCcccccCcccccCCCCCcEEEcccccCCccCCccccCCCCCCEEECcCCCCC
Q 047332 325 NLSSLRALYLYNNGLCGFVPEEIRYLKSLSELELCKNHLSGVIPHSIGNLTGLLLLNMCENHLS 388 (614)
Q Consensus 325 ~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~ls~n~l~ 388 (614)
.+++|+.|++++|.+.+. |..+..+++|+.|++++|.++ .+|..+..+++|+.|++++|.++
T Consensus 276 ~l~~L~~L~Ls~N~l~~l-~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~l~~L~~L~L~~N~l~ 337 (597)
T 3oja_B 276 KMQRLERLYISNNRLVAL-NLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIV 337 (597)
T ss_dssp TCSSCCEEECTTSCCCEE-ECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCC
T ss_pred CccCCCEEECCCCCCCCC-CcccccCCCCcEEECCCCCCC-ccCcccccCCCCCEEECCCCCCC
Confidence 555555555555555542 333344455555555555554 23333444445555555554444
No 38
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=100.00 E-value=6e-33 Score=280.32 Aligned_cols=306 Identities=25% Similarity=0.388 Sum_probs=198.8
Q ss_pred cCCCCCCEEeccCCcCccccCccccCCCCCCEEecCCCcccccCCccCCCCCCCCEeecCCCcccccCCccccCCCCCCE
Q 047332 252 GNLKSLLQLDLSENQLIGSIPLSFGNLSRLTLMSLFNNLLSGSLPPILGNLKSLSALGLHINQLSGVIPSSIGNLSSLRA 331 (614)
Q Consensus 252 ~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~ 331 (614)
..+++|++|+++++.+.. ++ .+..+++|++|++++|.+++. +. +..+++|++|++++|.+++. ..+..+++|++
T Consensus 41 ~~l~~L~~L~l~~~~i~~-~~-~~~~~~~L~~L~l~~n~i~~~-~~-~~~l~~L~~L~L~~n~i~~~--~~~~~l~~L~~ 114 (347)
T 4fmz_A 41 EELESITKLVVAGEKVAS-IQ-GIEYLTNLEYLNLNGNQITDI-SP-LSNLVKLTNLYIGTNKITDI--SALQNLTNLRE 114 (347)
T ss_dssp HHHTTCSEEECCSSCCCC-CT-TGGGCTTCCEEECCSSCCCCC-GG-GTTCTTCCEEECCSSCCCCC--GGGTTCTTCSE
T ss_pred hhcccccEEEEeCCcccc-ch-hhhhcCCccEEEccCCccccc-hh-hhcCCcCCEEEccCCcccCc--hHHcCCCcCCE
Confidence 455677777777777653 33 366677777777777766643 22 66666666666666666532 24556666666
Q ss_pred EEccCCcccccCcccccCCCCCcEEEcccccCCccCCccccCCCCCCEEECcCCCCCCCCCccccCCCCCcEEEccCCcC
Q 047332 332 LYLYNNGLCGFVPEEIRYLKSLSELELCKNHLSGVIPHSIGNLTGLLLLNMCENHLSGPIPKSFKNLTSVERVLLNQNNL 411 (614)
Q Consensus 332 L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~l~~n~~ 411 (614)
|++++|.+.+..+ +..+++|++|++++|......+ .+..+++|++|++ ++|.+
T Consensus 115 L~l~~n~i~~~~~--~~~l~~L~~L~l~~n~~~~~~~-~~~~l~~L~~L~l------------------------~~~~~ 167 (347)
T 4fmz_A 115 LYLNEDNISDISP--LANLTKMYSLNLGANHNLSDLS-PLSNMTGLNYLTV------------------------TESKV 167 (347)
T ss_dssp EECTTSCCCCCGG--GTTCTTCCEEECTTCTTCCCCG-GGTTCTTCCEEEC------------------------CSSCC
T ss_pred EECcCCcccCchh--hccCCceeEEECCCCCCccccc-chhhCCCCcEEEe------------------------cCCCc
Confidence 6666666554322 4455555555555554332222 2444444445544 44444
Q ss_pred CcccccccCCCCCCCEEECcCcccccccCccccCCCCCcEEEcccCcccccCCccCCCCCCCCEEeCCCCcCccccchhc
Q 047332 412 SGKVYEAFGDHPNLTFLNLSQNNFCGEISFNWRNFPKLGTFIVSVNNISGSIPPEIGDSPKLQVLDLSSNSIVGEIPVQL 491 (614)
Q Consensus 412 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~ 491 (614)
.+..+ +..+++|++|++++|.+.+..+ +..+++|+.+++++|.+.+..+ +..+++|++|++++|.+.+..+ +
T Consensus 168 ~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~~~~--~ 239 (347)
T 4fmz_A 168 KDVTP--IANLTDLYSLSLNYNQIEDISP--LASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDLSP--L 239 (347)
T ss_dssp CCCGG--GGGCTTCSEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--G
T ss_pred CCchh--hccCCCCCEEEccCCccccccc--ccCCCccceeecccCCCCCCch--hhcCCcCCEEEccCCccCCCcc--h
Confidence 33222 4445555555555555543322 4556666666666666654332 5667778888888887764333 7
Q ss_pred cCCCCCCEeeccCCccccCccccccCCCCCCEEeCCCCcCcccCCccccccCCCCEEeCCCCcCCcCCChhhhcCCCCCe
Q 047332 492 GKLFSLNKLILNLNQLSGGMPLELGSLTELQYLDLSANKLKSSIPKSIGNLLRLRYLDLSNNQFGHKIPIELEKLIHLSE 571 (614)
Q Consensus 492 ~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~ 571 (614)
..+++|++|++++|.+++. ..+..+++|++|++++|.+.+. ..+..+++|+.|++++|++++..|..+..+++|++
T Consensus 240 ~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~ 315 (347)
T 4fmz_A 240 ANLSQLTWLEIGTNQISDI--NAVKDLTKLKMLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTT 315 (347)
T ss_dssp TTCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSE
T ss_pred hcCCCCCEEECCCCccCCC--hhHhcCCCcCEEEccCCccCCC--hhhcCCCCCCEEECcCCcCCCcChhHhhccccCCE
Confidence 7788888888888888753 4577888888888888888754 45788888999999999888888888888889999
Q ss_pred eeCCCCCCCCCCCccccCCCCCCeEECcCCCCc
Q 047332 572 LDLSYNFLGEEIPFQICNVKSLEKLNLCHNNLL 604 (614)
Q Consensus 572 L~L~~n~~~~~~p~~l~~l~sL~~L~l~~n~l~ 604 (614)
|++++|++.+..| +..+++|++|++++|+++
T Consensus 316 L~L~~n~l~~~~~--~~~l~~L~~L~l~~N~i~ 346 (347)
T 4fmz_A 316 LFLSQNHITDIRP--LASLSKMDSADFANQVIK 346 (347)
T ss_dssp EECCSSSCCCCGG--GGGCTTCSEESSSCC---
T ss_pred EEccCCccccccC--hhhhhccceeehhhhccc
Confidence 9999998887766 678888999999998875
No 39
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=100.00 E-value=4.8e-33 Score=285.57 Aligned_cols=310 Identities=20% Similarity=0.178 Sum_probs=223.0
Q ss_pred CCCCCEEeccCCcCccccCccccCCCCCCEEecCCCcccccCCccCCCCCCCCEeecCCCcccccCCccccCCCCCCEEE
Q 047332 254 LKSLLQLDLSENQLIGSIPLSFGNLSRLTLMSLFNNLLSGSLPPILGNLKSLSALGLHINQLSGVIPSSIGNLSSLRALY 333 (614)
Q Consensus 254 l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~ 333 (614)
++++++|+++++.+....+..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+++..+..+..+++|+.|+
T Consensus 44 l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 123 (390)
T 3o6n_A 44 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLV 123 (390)
T ss_dssp GCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred cCCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEE
Confidence 57889999999888755555578889999999999998877777888889999999999988877777788888899999
Q ss_pred ccCCcccccCcccccCCCCCcEEEcccccCCccCCccccCCCCCCEEECcCCCCCCCCCccccCCCCCcEEEccCCcCCc
Q 047332 334 LYNNGLCGFVPEEIRYLKSLSELELCKNHLSGVIPHSIGNLTGLLLLNMCENHLSGPIPKSFKNLTSVERVLLNQNNLSG 413 (614)
Q Consensus 334 l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~ 413 (614)
+++|.+.+..+..+..+++|++|++++|.+++..+..+..+++|+.|++++|.+++. .+..+++|+.+++++|.+.+
T Consensus 124 L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~---~~~~l~~L~~L~l~~n~l~~ 200 (390)
T 3o6n_A 124 LERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV---DLSLIPSLFHANVSYNLLST 200 (390)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBC---CGGGCTTCSEEECCSSCCSE
T ss_pred CCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCcc---ccccccccceeecccccccc
Confidence 988888876555567888888888888888877777788888888888888887754 24556778888888877664
Q ss_pred ccccccCCCCCCCEEECcCcccccccCccccCCCCCcEEEcccCcccccCCccCCCCCCCCEEeCCCCcCccccchhccC
Q 047332 414 KVYEAFGDHPNLTFLNLSQNNFCGEISFNWRNFPKLGTFIVSVNNISGSIPPEIGDSPKLQVLDLSSNSIVGEIPVQLGK 493 (614)
Q Consensus 414 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~ 493 (614)
. ...+.|++|++++|.+..... ..+++|+.|++++|.+++. ..+..+++|++|++++|.+.+..|..+..
T Consensus 201 ~-----~~~~~L~~L~l~~n~l~~~~~---~~~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~ 270 (390)
T 3o6n_A 201 L-----AIPIAVEELDASHNSINVVRG---PVNVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHPFVK 270 (390)
T ss_dssp E-----ECCSSCSEEECCSSCCCEEEC---CCCSSCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEESGGGTT
T ss_pred c-----CCCCcceEEECCCCeeeeccc---cccccccEEECCCCCCccc--HHHcCCCCccEEECCCCcCCCcChhHccc
Confidence 3 234577778887777764422 2245677777777776643 35566667777777777766666666666
Q ss_pred CCCCCEeeccCCccccCccccccCCCCCCEEeCCCCcCcccCCccccccCCCCEEeCCCCcCCcCCChhhhcCCCCCeee
Q 047332 494 LFSLNKLILNLNQLSGGMPLELGSLTELQYLDLSANKLKSSIPKSIGNLLRLRYLDLSNNQFGHKIPIELEKLIHLSELD 573 (614)
Q Consensus 494 ~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~ 573 (614)
+++|++|++++|.+++ +|..+..+++|++|++++|.+. .+|..+..+++|+.|++++|++++. | +..+++|+.|+
T Consensus 271 l~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~L~~N~i~~~-~--~~~~~~L~~L~ 345 (390)
T 3o6n_A 271 MQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTL-K--LSTHHTLKNLT 345 (390)
T ss_dssp CSSCCEEECCSSCCCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCC-C--CCTTCCCSEEE
T ss_pred cccCCEEECCCCcCcc-cCcccCCCCCCCEEECCCCcce-ecCccccccCcCCEEECCCCcccee-C--chhhccCCEEE
Confidence 6677777777776663 3444556666677777766666 4555566666666666666666543 2 45556666666
Q ss_pred CCCCCCCC
Q 047332 574 LSYNFLGE 581 (614)
Q Consensus 574 L~~n~~~~ 581 (614)
+++|++..
T Consensus 346 l~~N~~~~ 353 (390)
T 3o6n_A 346 LSHNDWDC 353 (390)
T ss_dssp CCSSCEEH
T ss_pred cCCCCccc
Confidence 66666643
No 40
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=100.00 E-value=1.7e-32 Score=277.07 Aligned_cols=308 Identities=25% Similarity=0.318 Sum_probs=229.8
Q ss_pred cccCCCCCCeEEcccCccccccchhccCCCCCCEEeccCCcCccccCccccCCCCCCEEecCCCcccccCCccCCCCCCC
Q 047332 226 SLGNLSNLGILYLYSNSFSGSIPSIIGNLKSLLQLDLSENQLIGSIPLSFGNLSRLTLMSLFNNLLSGSLPPILGNLKSL 305 (614)
Q Consensus 226 ~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L 305 (614)
.+..+++|++|+++++.+. .++. +..+++|++|++++|.+.+. +. +..+++|++|++++|.+++ + ..+..+++|
T Consensus 39 ~~~~l~~L~~L~l~~~~i~-~~~~-~~~~~~L~~L~l~~n~i~~~-~~-~~~l~~L~~L~L~~n~i~~-~-~~~~~l~~L 112 (347)
T 4fmz_A 39 TQEELESITKLVVAGEKVA-SIQG-IEYLTNLEYLNLNGNQITDI-SP-LSNLVKLTNLYIGTNKITD-I-SALQNLTNL 112 (347)
T ss_dssp CHHHHTTCSEEECCSSCCC-CCTT-GGGCTTCCEEECCSSCCCCC-GG-GTTCTTCCEEECCSSCCCC-C-GGGTTCTTC
T ss_pred cchhcccccEEEEeCCccc-cchh-hhhcCCccEEEccCCccccc-hh-hhcCCcCCEEEccCCcccC-c-hHHcCCCcC
Confidence 3456789999999999987 4453 88899999999999998854 33 8999999999999999985 3 358999999
Q ss_pred CEeecCCCcccccCCccccCCCCCCEEEccCCcccccCcccccCCCCCcEEEcccccCCccCCccccCCCCCCEEECcCC
Q 047332 306 SALGLHINQLSGVIPSSIGNLSSLRALYLYNNGLCGFVPEEIRYLKSLSELELCKNHLSGVIPHSIGNLTGLLLLNMCEN 385 (614)
Q Consensus 306 ~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~ls~n 385 (614)
++|++++|.+.+..+ +..+++|+.|++++|......+. +..+++|++|++++|.+.+..+ +..+++|+.|++++|
T Consensus 113 ~~L~l~~n~i~~~~~--~~~l~~L~~L~l~~n~~~~~~~~-~~~l~~L~~L~l~~~~~~~~~~--~~~l~~L~~L~l~~n 187 (347)
T 4fmz_A 113 RELYLNEDNISDISP--LANLTKMYSLNLGANHNLSDLSP-LSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYN 187 (347)
T ss_dssp SEEECTTSCCCCCGG--GTTCTTCCEEECTTCTTCCCCGG-GTTCTTCCEEECCSSCCCCCGG--GGGCTTCSEEECTTS
T ss_pred CEEECcCCcccCchh--hccCCceeEEECCCCCCcccccc-hhhCCCCcEEEecCCCcCCchh--hccCCCCCEEEccCC
Confidence 999999999985433 88999999999999966655444 8899999999999999885533 777888888888888
Q ss_pred CCCCCCCccccCCCCCcEEEccCCcCCcccccccCCCCCCCEEECcCcccccccCccccCCCCCcEEEcccCcccccCCc
Q 047332 386 HLSGPIPKSFKNLTSVERVLLNQNNLSGKVYEAFGDHPNLTFLNLSQNNFCGEISFNWRNFPKLGTFIVSVNNISGSIPP 465 (614)
Q Consensus 386 ~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~ 465 (614)
.+.+..+ +..+++|+.+++++|.+.+..+ +..+++|++|++++|.+.+..+
T Consensus 188 ~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~~~~------------------------- 238 (347)
T 4fmz_A 188 QIEDISP--LASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDLSP------------------------- 238 (347)
T ss_dssp CCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG-------------------------
T ss_pred ccccccc--ccCCCccceeecccCCCCCCch--hhcCCcCCEEEccCCccCCCcc-------------------------
Confidence 8765432 6666777777777766654332 4455556666665555543221
Q ss_pred cCCCCCCCCEEeCCCCcCccccchhccCCCCCCEeeccCCccccCccccccCCCCCCEEeCCCCcCcccCCccccccCCC
Q 047332 466 EIGDSPKLQVLDLSSNSIVGEIPVQLGKLFSLNKLILNLNQLSGGMPLELGSLTELQYLDLSANKLKSSIPKSIGNLLRL 545 (614)
Q Consensus 466 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~l~~l~~L 545 (614)
+..+++|++|++++|.+.+. ..+..+++|++|++++|.+++. ..+..+++|+.|++++|.+.+..+..+..+++|
T Consensus 239 -~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L 313 (347)
T 4fmz_A 239 -LANLSQLTWLEIGTNQISDI--NAVKDLTKLKMLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNL 313 (347)
T ss_dssp -GTTCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTC
T ss_pred -hhcCCCCCEEECCCCccCCC--hhHhcCCCcCEEEccCCccCCC--hhhcCCCCCCEEECcCCcCCCcChhHhhccccC
Confidence 45556666666666666532 3466677777777777777643 346777888888888888877777778888888
Q ss_pred CEEeCCCCcCCcCCChhhhcCCCCCeeeCCCCCCC
Q 047332 546 RYLDLSNNQFGHKIPIELEKLIHLSELDLSYNFLG 580 (614)
Q Consensus 546 ~~L~l~~n~~~~~~p~~l~~l~~L~~L~L~~n~~~ 580 (614)
+.|++++|++++..| +..+++|++|++++|+++
T Consensus 314 ~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~N~i~ 346 (347)
T 4fmz_A 314 TTLFLSQNHITDIRP--LASLSKMDSADFANQVIK 346 (347)
T ss_dssp SEEECCSSSCCCCGG--GGGCTTCSEESSSCC---
T ss_pred CEEEccCCccccccC--hhhhhccceeehhhhccc
Confidence 888888888876655 677888888888888764
No 41
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=100.00 E-value=4.2e-34 Score=285.01 Aligned_cols=280 Identities=19% Similarity=0.285 Sum_probs=155.8
Q ss_pred CCchHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccceeeCC---------CCCEEEEEcCCCC
Q 047332 3 SDSSKETFALLKWKRSLQNKNISLLSSWTLHPDNASNVPSYSKSKISPCAWLGISCNQ---------AGRVISINLSSMA 73 (614)
Q Consensus 3 ~~~~~~~~~l~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~c~w~~~~c~~---------~~~v~~l~l~~~~ 73 (614)
++.+.|++||++||+++..++.+....|.... ....++|.|.|+.|.. ..+|+.|+++++.
T Consensus 23 ~~~~~~~~aLl~~k~~~~~~~~~~~~~w~~~~----------~~~~~~~~~~g~~~~~~~~~l~~~~~~~l~~L~L~~n~ 92 (328)
T 4fcg_A 23 TALRPYHDVLSQWQRHYNADRNRWHSAWRQAN----------SNNPQIETRTGRALKATADLLEDATQPGRVALELRSVP 92 (328)
T ss_dssp CCCCCHHHHHHHHHHHHHHCCTTHHHHHHHHT----------TTCTTSCCSHHHHHHHHHHHHHHHTSTTCCEEEEESSC
T ss_pred ccCchHHHHHHHHHHhccCCchhhhhhhcccc----------cccccccccCCcchhhhHHHHhcccccceeEEEccCCC
Confidence 34667999999999999665666677783100 1156789999999952 2456666666666
Q ss_pred CCcccCcccccCCCCCcEEECCCCCCCccCcccccCCCCCCEEeCCCCCCCCCCCcCCCCCCCCCEEEcccccCCCCCCc
Q 047332 74 LNGTLQEFAFSSFPHLVQLNLSFNIFFGIIPPQIGNLSKLQYLDLGSNQLSGVIPPEIGHLNQLRILYFDVNQLHGSIPP 153 (614)
Q Consensus 74 l~~~~~~~~~~~l~~L~~L~Ls~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~ 153 (614)
+. .++. .+..+++|++|+|++|.++ .+|..+..+++|++|++++|.++ .+|..++.+++|++|++++|++.+.+|.
T Consensus 93 l~-~lp~-~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~~n~~~~~~p~ 168 (328)
T 4fcg_A 93 LP-QFPD-QAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELTELPE 168 (328)
T ss_dssp CS-SCCS-CGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEEEEETTCCCCCS
T ss_pred ch-hcCh-hhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEECCCCCCccccCh
Confidence 55 4444 4555666666666666555 45555555666666666666555 4555555566666666665555555554
Q ss_pred cccCCCCCcEEEeccccCCCCCCcccCCCCCCcEEEeecCCCcccCCccccCCCCCCeeeccCccCCccCCccccCCCCC
Q 047332 154 EIGQLSLINVLALCHNNLYGSIPSSLGNLSNLANFYFNNNSLFDSIPLVLGNLNSLSTMDLSQNQFSGSIPLSLGNLSNL 233 (614)
Q Consensus 154 ~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L 233 (614)
.+... ..+..+..+++|++|++++|.+. .+|..++.+++|++|++++|.++ .+|..+..+++|
T Consensus 169 ~~~~~---------------~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~-~l~~~l~~l~~L 231 (328)
T 4fcg_A 169 PLAST---------------DASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLS-ALGPAIHHLPKL 231 (328)
T ss_dssp CSEEE---------------C-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCC-CCCGGGGGCTTC
T ss_pred hHhhc---------------cchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCC-cCchhhccCCCC
Confidence 44320 00000112445555555555444 34444445555555555555554 233345555555
Q ss_pred CeEEcccCccccccchhccCCCCCCEEeccCCcCccccCccccCCCCCCEEecCCCcccccCCccCCCCCCCCEeecCCC
Q 047332 234 GILYLYSNSFSGSIPSIIGNLKSLLQLDLSENQLIGSIPLSFGNLSRLTLMSLFNNLLSGSLPPILGNLKSLSALGLHIN 313 (614)
Q Consensus 234 ~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~n 313 (614)
++|++++|.+.+.+|..+..+++|++|++++|.+.+.+|..+..+++|++|++++|.+.+.+|..+..+++|+.+++..+
T Consensus 232 ~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~ 311 (328)
T 4fcg_A 232 EELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPH 311 (328)
T ss_dssp CEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGG
T ss_pred CEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHH
Confidence 55555555555555555555555555555555555555555555555555555555555555555555555555555443
No 42
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=100.00 E-value=8.8e-33 Score=298.99 Aligned_cols=309 Identities=20% Similarity=0.171 Sum_probs=208.9
Q ss_pred CCCCCEEeccCCcCccccCccccCCCCCCEEecCCCcccccCCccCCCCCCCCEeecCCCcccccCCccccCCCCCCEEE
Q 047332 254 LKSLLQLDLSENQLIGSIPLSFGNLSRLTLMSLFNNLLSGSLPPILGNLKSLSALGLHINQLSGVIPSSIGNLSSLRALY 333 (614)
Q Consensus 254 l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~ 333 (614)
+.+++.+++++|.+....+..+..+++|++|++++|.+++..+..|..+++|++|++++|.+++..+..|+.+++|+.|+
T Consensus 50 l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 129 (597)
T 3oja_B 50 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLV 129 (597)
T ss_dssp GCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEE
Confidence 46788888888888766555677788888888888888877777788888888888888888877777778888888888
Q ss_pred ccCCcccccCcccccCCCCCcEEEcccccCCccCCccccCCCCCCEEECcCCCCCCCCCccccCCCCCcEEEccCCcCCc
Q 047332 334 LYNNGLCGFVPEEIRYLKSLSELELCKNHLSGVIPHSIGNLTGLLLLNMCENHLSGPIPKSFKNLTSVERVLLNQNNLSG 413 (614)
Q Consensus 334 l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~ 413 (614)
+++|.+.+..+..|..+++|++|++++|.+++..|..+..+++|+.|++++|.+++.. +..+++|+.|++++|.+.+
T Consensus 130 L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~---~~~l~~L~~L~l~~n~l~~ 206 (597)
T 3oja_B 130 LERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD---LSLIPSLFHANVSYNLLST 206 (597)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCC---GGGCTTCSEEECCSSCCSE
T ss_pred eeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcC---hhhhhhhhhhhcccCcccc
Confidence 8888888766666677888888888888888777777777888888888888776542 4456677777777776654
Q ss_pred ccccccCCCCCCCEEECcCcccccccCccccCCCCCcEEEcccCcccccCCccCCCCCCCCEEeCCCCcCccccchhccC
Q 047332 414 KVYEAFGDHPNLTFLNLSQNNFCGEISFNWRNFPKLGTFIVSVNNISGSIPPEIGDSPKLQVLDLSSNSIVGEIPVQLGK 493 (614)
Q Consensus 414 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~ 493 (614)
. ...++|+.|++++|.+....+.. .++|+.|++++|.+++ +..+..+++|+.|++++|.+.+..|..+..
T Consensus 207 l-----~~~~~L~~L~ls~n~l~~~~~~~---~~~L~~L~L~~n~l~~--~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~ 276 (597)
T 3oja_B 207 L-----AIPIAVEELDASHNSINVVRGPV---NVELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKIMYHPFVK 276 (597)
T ss_dssp E-----ECCTTCSEEECCSSCCCEEECSC---CSCCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCEEESGGGTT
T ss_pred c-----cCCchhheeeccCCccccccccc---CCCCCEEECCCCCCCC--ChhhccCCCCCEEECCCCccCCCCHHHhcC
Confidence 2 23456777777777765433221 3456666666666654 244555666666666666666555556666
Q ss_pred CCCCCEeeccCCccccCccccccCCCCCCEEeCCCCcCcccCCccccccCCCCEEeCCCCcCCcCCChhhhcCCCCCeee
Q 047332 494 LFSLNKLILNLNQLSGGMPLELGSLTELQYLDLSANKLKSSIPKSIGNLLRLRYLDLSNNQFGHKIPIELEKLIHLSELD 573 (614)
Q Consensus 494 ~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~ 573 (614)
+++|+.|++++|.+++ +|..+..+++|+.|++++|.+. .+|..+..+++|+.|++++|.+++.. +..+++|+.|+
T Consensus 277 l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~l~~L~~L~L~~N~l~~~~---~~~~~~L~~L~ 351 (597)
T 3oja_B 277 MQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTLK---LSTHHTLKNLT 351 (597)
T ss_dssp CSSCCEEECTTSCCCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCCC---CCTTCCCSEEE
T ss_pred ccCCCEEECCCCCCCC-CCcccccCCCCcEEECCCCCCC-ccCcccccCCCCCEEECCCCCCCCcC---hhhcCCCCEEE
Confidence 6666666666666653 3444455566666666666655 45555555666666666666654432 34455566666
Q ss_pred CCCCCCC
Q 047332 574 LSYNFLG 580 (614)
Q Consensus 574 L~~n~~~ 580 (614)
+++|++.
T Consensus 352 l~~N~~~ 358 (597)
T 3oja_B 352 LSHNDWD 358 (597)
T ss_dssp CCSSCEE
T ss_pred eeCCCCC
Confidence 6666554
No 43
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.98 E-value=1.9e-32 Score=271.48 Aligned_cols=251 Identities=30% Similarity=0.437 Sum_probs=172.2
Q ss_pred CCcEEEcccccCCc--cCCccccCCCCCCEEECcC-CCCCCCCCccccCCCCCcEEEccCCcCCcccccccCCCCCCCEE
Q 047332 352 SLSELELCKNHLSG--VIPHSIGNLTGLLLLNMCE-NHLSGPIPKSFKNLTSVERVLLNQNNLSGKVYEAFGDHPNLTFL 428 (614)
Q Consensus 352 ~L~~L~l~~n~~~~--~~~~~~~~l~~L~~L~ls~-n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L 428 (614)
++++|++++|.+++ .+|..+..+++|++|++++ |.+.+.+|..|..+++|++|++++|.+.+..+..+..+++|++|
T Consensus 51 ~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L 130 (313)
T 1ogq_A 51 RVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTL 130 (313)
T ss_dssp CEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEE
T ss_pred eEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEE
Confidence 45555555555555 5555555666666666663 55555566666666666666666666665666666666666666
Q ss_pred ECcCcccccccCccccCCCCCcEEEcccCcccccCCccCCCCC-CCCEEeCCCCcCccccchhccCCCCCCEeeccCCcc
Q 047332 429 NLSQNNFCGEISFNWRNFPKLGTFIVSVNNISGSIPPEIGDSP-KLQVLDLSSNSIVGEIPVQLGKLFSLNKLILNLNQL 507 (614)
Q Consensus 429 ~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~-~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~ 507 (614)
++++|.+.+.+|..+..+++|++|++++|++++.+|..+..++ .|++|++++|.+.+.+|..+..+. |++|++++|.+
T Consensus 131 ~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l 209 (313)
T 1ogq_A 131 DFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNML 209 (313)
T ss_dssp ECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSEE
T ss_pred eCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCcc
Confidence 6666666666666666667777777777777666666666665 677777777777766777676665 77777777777
Q ss_pred ccCccccccCCCCCCEEeCCCCcCcccCCccccccCCCCEEeCCCCcCCcCCChhhhcCCCCCeeeCCCCCCCCCCCccc
Q 047332 508 SGGMPLELGSLTELQYLDLSANKLKSSIPKSIGNLLRLRYLDLSNNQFGHKIPIELEKLIHLSELDLSYNFLGEEIPFQI 587 (614)
Q Consensus 508 ~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~l 587 (614)
.+..|..+..+++|+.|++++|.+.+.+|. +..+++|++|++++|++++.+|..+..+++|++|++++|++.+.+|..
T Consensus 210 ~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~- 287 (313)
T 1ogq_A 210 EGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG- 287 (313)
T ss_dssp EECCGGGCCTTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCS-
T ss_pred cCcCCHHHhcCCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCC-
Confidence 777777777777777777777777655444 666777777777777777777777777777777777777777777765
Q ss_pred cCCCCCCeEECcCCC-Ccc
Q 047332 588 CNVKSLEKLNLCHNN-LLG 605 (614)
Q Consensus 588 ~~l~sL~~L~l~~n~-l~~ 605 (614)
..+++|+.+++++|+ +.|
T Consensus 288 ~~l~~L~~l~l~~N~~lc~ 306 (313)
T 1ogq_A 288 GNLQRFDVSAYANNKCLCG 306 (313)
T ss_dssp TTGGGSCGGGTCSSSEEES
T ss_pred ccccccChHHhcCCCCccC
Confidence 667777777777777 443
No 44
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.98 E-value=1.6e-30 Score=260.50 Aligned_cols=290 Identities=23% Similarity=0.253 Sum_probs=182.1
Q ss_pred CCCEEecCCCcccccCCccCCCCCCCCEeecCCCcccccCCccccCCCCCCEEEccCCcccccCcccccCCCCCcEEEcc
Q 047332 280 RLTLMSLFNNLLSGSLPPILGNLKSLSALGLHINQLSGVIPSSIGNLSSLRALYLYNNGLCGFVPEEIRYLKSLSELELC 359 (614)
Q Consensus 280 ~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~ 359 (614)
+++.++++++.++ .+|..+. +++++|++++|.+++..+..+..+++|++|++++|.+.+..|..+..+++|++|+++
T Consensus 34 ~l~~l~~~~~~l~-~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 110 (332)
T 2ft3_A 34 HLRVVQCSDLGLK-AVPKEIS--PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYIS 110 (332)
T ss_dssp ETTEEECCSSCCS-SCCSCCC--TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECC
T ss_pred cCCEEECCCCCcc-ccCCCCC--CCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECC
Confidence 4666666666665 4444332 456666666666665555555666666666666666665555555556666666666
Q ss_pred cccCCccCCccccCCCCCCEEECcCCCCCCCCCccccCCCCCcEEEccCCcCCcccccccCCCCCCCEEECcCccccccc
Q 047332 360 KNHLSGVIPHSIGNLTGLLLLNMCENHLSGPIPKSFKNLTSVERVLLNQNNLSGKVYEAFGDHPNLTFLNLSQNNFCGEI 439 (614)
Q Consensus 360 ~n~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~ 439 (614)
+|.++ .+|..+. ++|++|++++|.++...+..|..+++|+.|++++|.++. .+..
T Consensus 111 ~n~l~-~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~----------------------~~~~ 165 (332)
T 2ft3_A 111 KNHLV-EIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLEN----------------------SGFE 165 (332)
T ss_dssp SSCCC-SCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBG----------------------GGSC
T ss_pred CCcCC-ccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCcccc----------------------CCCC
Confidence 66555 2332222 445555555555544444444444444444444444431 1123
Q ss_pred CccccCCCCCcEEEcccCcccccCCccCCCCCCCCEEeCCCCcCccccchhccCCCCCCEeeccCCccccCccccccCCC
Q 047332 440 SFNWRNFPKLGTFIVSVNNISGSIPPEIGDSPKLQVLDLSSNSIVGEIPVQLGKLFSLNKLILNLNQLSGGMPLELGSLT 519 (614)
Q Consensus 440 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~ 519 (614)
+..+..+ +|+.|++++|.+++ +|..+. ++|++|++++|.+.+..+..+..+++|++|++++|.+.+..+..+..++
T Consensus 166 ~~~~~~l-~L~~L~l~~n~l~~-l~~~~~--~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~ 241 (332)
T 2ft3_A 166 PGAFDGL-KLNYLRISEAKLTG-IPKDLP--ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLP 241 (332)
T ss_dssp TTSSCSC-CCSCCBCCSSBCSS-CCSSSC--SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCT
T ss_pred cccccCC-ccCEEECcCCCCCc-cCcccc--CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCC
Confidence 3334444 55555666655553 333332 5777888888887766667777888888888888888876676778888
Q ss_pred CCCEEeCCCCcCcccCCccccccCCCCEEeCCCCcCCcCCChhhhc------CCCCCeeeCCCCCCC--CCCCccccCCC
Q 047332 520 ELQYLDLSANKLKSSIPKSIGNLLRLRYLDLSNNQFGHKIPIELEK------LIHLSELDLSYNFLG--EEIPFQICNVK 591 (614)
Q Consensus 520 ~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~l~~------l~~L~~L~L~~n~~~--~~~p~~l~~l~ 591 (614)
+|++|++++|.+. .+|..+..+++|+.|++++|++++..+..|.. .++|+.|++++|++. +..|..|..++
T Consensus 242 ~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~ 320 (332)
T 2ft3_A 242 TLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVT 320 (332)
T ss_dssp TCCEEECCSSCCC-BCCTTGGGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBC
T ss_pred CCCEEECCCCcCe-ecChhhhcCccCCEEECCCCCCCccChhHccccccccccccccceEeecCcccccccCcccccccc
Confidence 8888888888887 67777888888888888888887766666654 356888888888876 56667778888
Q ss_pred CCCeEECcCCC
Q 047332 592 SLEKLNLCHNN 602 (614)
Q Consensus 592 sL~~L~l~~n~ 602 (614)
+|+.+++++|.
T Consensus 321 ~L~~l~l~~n~ 331 (332)
T 2ft3_A 321 DRLAIQFGNYK 331 (332)
T ss_dssp CSTTEEC----
T ss_pred hhhhhhccccc
Confidence 88888888774
No 45
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.97 E-value=3.9e-30 Score=257.55 Aligned_cols=269 Identities=22% Similarity=0.255 Sum_probs=172.0
Q ss_pred CCCCEEEccCCcccccCcccccCCCCCcEEEcccccCCccCCccccCCCCCCEEECcCCCCCCCCCccccCCCCCcEEEc
Q 047332 327 SSLRALYLYNNGLCGFVPEEIRYLKSLSELELCKNHLSGVIPHSIGNLTGLLLLNMCENHLSGPIPKSFKNLTSVERVLL 406 (614)
Q Consensus 327 ~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~l 406 (614)
+.++.|++++|++.+..+..+..+++|++|++++|.+++..|..+..+++|++|++++|.++. +|..+. ++|++|++
T Consensus 52 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~-l~~~~~--~~L~~L~l 128 (330)
T 1xku_A 52 PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKE-LPEKMP--KTLQELRV 128 (330)
T ss_dssp TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCSB-CCSSCC--TTCCEEEC
T ss_pred CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCcCCc-cChhhc--ccccEEEC
Confidence 344445555554444444444445555555555555554444455555555555555555442 222221 45666666
Q ss_pred cCCcCCcccccccCCCCCCCEEECcCccccc--ccCccccCCCCCcEEEcccCcccccCCccCCCCCCCCEEeCCCCcCc
Q 047332 407 NQNNLSGKVYEAFGDHPNLTFLNLSQNNFCG--EISFNWRNFPKLGTFIVSVNNISGSIPPEIGDSPKLQVLDLSSNSIV 484 (614)
Q Consensus 407 ~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~--~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 484 (614)
++|.+.+..+..+..+++|++|++++|.+.. ..+..+..+++|+.|++++|.++. +|..+. ++|++|++++|.+.
T Consensus 129 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~-l~~~~~--~~L~~L~l~~n~l~ 205 (330)
T 1xku_A 129 HENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITT-IPQGLP--PSLTELHLDGNKIT 205 (330)
T ss_dssp CSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCS-CCSSCC--TTCSEEECTTSCCC
T ss_pred CCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCcccc-CCcccc--ccCCEEECCCCcCC
Confidence 6666655555556666666666666666542 444556666777777777776653 443332 67888888888887
Q ss_pred cccchhccCCCCCCEeeccCCccccCccccccCCCCCCEEeCCCCcCcccCCccccccCCCCEEeCCCCcCCcCCChhhh
Q 047332 485 GEIPVQLGKLFSLNKLILNLNQLSGGMPLELGSLTELQYLDLSANKLKSSIPKSIGNLLRLRYLDLSNNQFGHKIPIELE 564 (614)
Q Consensus 485 ~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~l~ 564 (614)
+..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+. .+|.++..+++|++|++++|++++..+..|.
T Consensus 206 ~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~ 284 (330)
T 1xku_A 206 KVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFC 284 (330)
T ss_dssp EECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCCCCTTSSS
T ss_pred ccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCc-cCChhhccCCCcCEEECCCCcCCccChhhcC
Confidence 666777788888888888888887766667778888888888888887 6777788888888888888888776666554
Q ss_pred c------CCCCCeeeCCCCCCCC--CCCccccCCCCCCeEECcCCC
Q 047332 565 K------LIHLSELDLSYNFLGE--EIPFQICNVKSLEKLNLCHNN 602 (614)
Q Consensus 565 ~------l~~L~~L~L~~n~~~~--~~p~~l~~l~sL~~L~l~~n~ 602 (614)
. .+.|+.|++++|++.. ..|..|..+.+++.+++++|+
T Consensus 285 ~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~~l~~l~L~~N~ 330 (330)
T 1xku_A 285 PPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNYK 330 (330)
T ss_dssp CSSCCTTSCCCSEEECCSSSSCGGGSCGGGGTTCCCGGGEEC----
T ss_pred CcccccccccccceEeecCcccccccCccccccccceeEEEecccC
Confidence 3 3678888888888753 455677778888888888874
No 46
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.97 E-value=5.9e-30 Score=256.21 Aligned_cols=245 Identities=23% Similarity=0.315 Sum_probs=125.2
Q ss_pred CCcEEECCCCCCCccCcccccCCCCCCEEeCCCCCCCCCCCcCCCCCCCCCEEEcccccCCCCCCccccCCCCCcEEEec
Q 047332 88 HLVQLNLSFNIFFGIIPPQIGNLSKLQYLDLGSNQLSGVIPPEIGHLNQLRILYFDVNQLHGSIPPEIGQLSLINVLALC 167 (614)
Q Consensus 88 ~L~~L~Ls~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~ 167 (614)
++++++++++.++. +|..+. ++|++|++++|.+++..+..|+++++|++|++++|.+++..|..+.++++|++|+++
T Consensus 32 ~l~~l~~~~~~l~~-lp~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls 108 (330)
T 1xku_A 32 HLRVVQCSDLGLEK-VPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLS 108 (330)
T ss_dssp ETTEEECTTSCCCS-CCCSCC--TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred CCeEEEecCCCccc-cCccCC--CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECC
Confidence 56777777766654 444332 567777777777776555567777777777777777766556667777777777777
Q ss_pred cccCCCCCCcccCCCCCCcEEEeecCCCcccCCccccCCCCCCeeeccCccCCc--cCCccccCCCCCCeEEcccCcccc
Q 047332 168 HNNLYGSIPSSLGNLSNLANFYFNNNSLFDSIPLVLGNLNSLSTMDLSQNQFSG--SIPLSLGNLSNLGILYLYSNSFSG 245 (614)
Q Consensus 168 ~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~--~~~~~l~~l~~L~~L~L~~~~~~~ 245 (614)
+|.++ .+|..+. ++|++|++++|.+.+..+..+..+++|++|++++|.+.. ..+..+..+++|++|++++|.++
T Consensus 109 ~n~l~-~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~- 184 (330)
T 1xku_A 109 KNQLK-ELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT- 184 (330)
T ss_dssp SSCCS-BCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCC-
T ss_pred CCcCC-ccChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccc-
Confidence 77665 3333322 455555555555554444445555555555555554431 23333344444444444444333
Q ss_pred ccchhccCCCCCCEEeccCCcCccccCccccCCCCCCEEecCCCcccccCCccCCCCCCCCEeecCCCcccccCCccccC
Q 047332 246 SIPSIIGNLKSLLQLDLSENQLIGSIPLSFGNLSRLTLMSLFNNLLSGSLPPILGNLKSLSALGLHINQLSGVIPSSIGN 325 (614)
Q Consensus 246 ~~~~~l~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~ 325 (614)
.+|. .+. ++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+..
T Consensus 185 ~l~~------------------------~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~ 238 (330)
T 1xku_A 185 TIPQ------------------------GLP--PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLAN 238 (330)
T ss_dssp SCCS------------------------SCC--TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGG
T ss_pred cCCc------------------------ccc--ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccC
Confidence 2222 111 34444444444444333334444444444444444444333333444
Q ss_pred CCCCCEEEccCCcccccCcccccCCCCCcEEEcccccCCcc
Q 047332 326 LSSLRALYLYNNGLCGFVPEEIRYLKSLSELELCKNHLSGV 366 (614)
Q Consensus 326 ~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~ 366 (614)
+++|+.|++++|++. .+|..+..+++|++|++++|.+++.
T Consensus 239 l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~i~~~ 278 (330)
T 1xku_A 239 TPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAI 278 (330)
T ss_dssp STTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCCC
T ss_pred CCCCCEEECCCCcCc-cCChhhccCCCcCEEECCCCcCCcc
Confidence 444444444444444 2333344444444444444444433
No 47
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.97 E-value=1.2e-34 Score=304.89 Aligned_cols=355 Identities=19% Similarity=0.165 Sum_probs=199.6
Q ss_pred CCCCeeeccCccCCccCCcc-ccCCCCCCeEEcccCcccc----ccchhccCCCCCCEEeccCCcCccccCccc-cCCC-
Q 047332 207 NSLSTMDLSQNQFSGSIPLS-LGNLSNLGILYLYSNSFSG----SIPSIIGNLKSLLQLDLSENQLIGSIPLSF-GNLS- 279 (614)
Q Consensus 207 ~~L~~L~l~~~~~~~~~~~~-l~~l~~L~~L~L~~~~~~~----~~~~~l~~l~~L~~L~L~~n~~~~~~~~~l-~~l~- 279 (614)
++|+.|+++++.++...... +..+++|++|++++|.+++ .++..+..+++|++|++++|.+....+..+ ..++
T Consensus 3 ~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~ 82 (461)
T 1z7x_W 3 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQT 82 (461)
T ss_dssp EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCS
T ss_pred ccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhh
Confidence 46788888888876443332 6677888888888888764 345667778888888888888765433332 2233
Q ss_pred ---CCCEEecCCCcccc----cCCccCCCCCCCCEeecCCCcccccCCccc-----cCCCCCCEEEccCCcccccC----
Q 047332 280 ---RLTLMSLFNNLLSG----SLPPILGNLKSLSALGLHINQLSGVIPSSI-----GNLSSLRALYLYNNGLCGFV---- 343 (614)
Q Consensus 280 ---~L~~L~L~~~~~~~----~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l-----~~~~~L~~L~l~~n~~~~~~---- 343 (614)
+|++|++++|.++. .++..+..+++|++|++++|.+++..+..+ ...++|++|++++|++.+..
T Consensus 83 ~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l 162 (461)
T 1z7x_W 83 PSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPL 162 (461)
T ss_dssp TTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHH
T ss_pred CCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHH
Confidence 68888888888774 446677778888888888887765433322 22456888888888777632
Q ss_pred cccccCCCCCcEEEcccccCCccCCcccc-----CCCCCCEEECcCCCCCCC----CCccccCCCCCcEEEccCCcCCcc
Q 047332 344 PEEIRYLKSLSELELCKNHLSGVIPHSIG-----NLTGLLLLNMCENHLSGP----IPKSFKNLTSVERVLLNQNNLSGK 414 (614)
Q Consensus 344 ~~~~~~~~~L~~L~l~~n~~~~~~~~~~~-----~l~~L~~L~ls~n~l~~~----~~~~~~~~~~L~~L~l~~n~~~~~ 414 (614)
+..+..+++|++|++++|.+++..+..+. ..++|+.|++++|.+++. ++..+..+++|++|++++|.+.+.
T Consensus 163 ~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~ 242 (461)
T 1z7x_W 163 ASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDV 242 (461)
T ss_dssp HHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHH
T ss_pred HHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChH
Confidence 44455567777777777776644333332 244677777777766643 344455566666666666665533
Q ss_pred cc-----cccCCCCCCCEEECcCcccccc----cCccccCCCCCcEEEcccCcccccCCccCCCCCCCCEEeCCCCcCcc
Q 047332 415 VY-----EAFGDHPNLTFLNLSQNNFCGE----ISFNWRNFPKLGTFIVSVNNISGSIPPEIGDSPKLQVLDLSSNSIVG 485 (614)
Q Consensus 415 ~~-----~~~~~~~~L~~L~l~~~~~~~~----~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 485 (614)
.. ..+..+++|++|++++|.+.+. ++..+..+++|+.|++++|.+++..+..+.
T Consensus 243 ~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~----------------- 305 (461)
T 1z7x_W 243 GMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLC----------------- 305 (461)
T ss_dssp HHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHH-----------------
T ss_pred HHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHH-----------------
Confidence 21 1122355666666666655442 233333445555555555544322111111
Q ss_pred ccchhc-cCCCCCCEeeccCCccccC----ccccccCCCCCCEEeCCCCcCcccCCccccc-----cCCCCEEeCCCCcC
Q 047332 486 EIPVQL-GKLFSLNKLILNLNQLSGG----MPLELGSLTELQYLDLSANKLKSSIPKSIGN-----LLRLRYLDLSNNQF 555 (614)
Q Consensus 486 ~~~~~~-~~~~~L~~L~l~~n~~~~~----~~~~~~~l~~L~~L~ls~n~l~~~~~~~l~~-----l~~L~~L~l~~n~~ 555 (614)
..+ ...++|++|++++|.+++. ++..+..+++|++|++++|.+.+..+..+.. .++|++|++++|.+
T Consensus 306 ---~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i 382 (461)
T 1z7x_W 306 ---ETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDV 382 (461)
T ss_dssp ---HHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCC
T ss_pred ---HHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCC
Confidence 000 1113444444444444432 2333344455555555555444333322221 34555555555555
Q ss_pred Cc----CCChhhhcCCCCCeeeCCCCCCCC
Q 047332 556 GH----KIPIELEKLIHLSELDLSYNFLGE 581 (614)
Q Consensus 556 ~~----~~p~~l~~l~~L~~L~L~~n~~~~ 581 (614)
++ .+|..+..+++|++|++++|++.+
T Consensus 383 ~~~~~~~l~~~l~~~~~L~~L~l~~N~i~~ 412 (461)
T 1z7x_W 383 SDSSCSSLAATLLANHSLRELDLSNNCLGD 412 (461)
T ss_dssp CHHHHHHHHHHHHHCCCCCEEECCSSSCCH
T ss_pred ChhhHHHHHHHHHhCCCccEEECCCCCCCH
Confidence 43 344444445555555555555443
No 48
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.97 E-value=2.8e-34 Score=302.03 Aligned_cols=379 Identities=19% Similarity=0.151 Sum_probs=257.6
Q ss_pred CCCCcEEEeecCCCcccCCc-cccCCCCCCeeeccCccCCc----cCCccccCCCCCCeEEcccCccccccchhc-cCCC
Q 047332 182 LSNLANFYFNNNSLFDSIPL-VLGNLNSLSTMDLSQNQFSG----SIPLSLGNLSNLGILYLYSNSFSGSIPSII-GNLK 255 (614)
Q Consensus 182 l~~L~~L~l~~~~~~~~~~~-~l~~l~~L~~L~l~~~~~~~----~~~~~l~~l~~L~~L~L~~~~~~~~~~~~l-~~l~ 255 (614)
.++|++|+++++.+...... .+..+++|++|++++|.++. .++..+..+++|++|++++|.+.+..+..+ ..++
T Consensus 2 ~~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~ 81 (461)
T 1z7x_W 2 SLDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQ 81 (461)
T ss_dssp CEEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTC
T ss_pred CccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHh
Confidence 35789999999998765333 36788999999999999874 346677888999999999999876544333 3344
Q ss_pred ----CCCEEeccCCcCcc----ccCccccCCCCCCEEecCCCcccccCCcc-----CCCCCCCCEeecCCCcccccC---
Q 047332 256 ----SLLQLDLSENQLIG----SIPLSFGNLSRLTLMSLFNNLLSGSLPPI-----LGNLKSLSALGLHINQLSGVI--- 319 (614)
Q Consensus 256 ----~L~~L~L~~n~~~~----~~~~~l~~l~~L~~L~L~~~~~~~~~~~~-----l~~l~~L~~L~L~~n~l~~~~--- 319 (614)
+|++|++++|.+.. .++..+..+++|++|++++|.+++..+.. ....++|++|++++|.+++..
T Consensus 82 ~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~ 161 (461)
T 1z7x_W 82 TPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEP 161 (461)
T ss_dssp STTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHH
T ss_pred hCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHH
Confidence 79999999999874 45778899999999999999987543332 233578999999999998643
Q ss_pred -CccccCCCCCCEEEccCCcccccCccccc-----CCCCCcEEEcccccCCcc----CCccccCCCCCCEEECcCCCCCC
Q 047332 320 -PSSIGNLSSLRALYLYNNGLCGFVPEEIR-----YLKSLSELELCKNHLSGV----IPHSIGNLTGLLLLNMCENHLSG 389 (614)
Q Consensus 320 -~~~l~~~~~L~~L~l~~n~~~~~~~~~~~-----~~~~L~~L~l~~n~~~~~----~~~~~~~l~~L~~L~ls~n~l~~ 389 (614)
+..+..+++|++|++++|.+.+..+..+. ..++|++|++++|.+++. ++..+..+++|+.|++++|.+++
T Consensus 162 l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~ 241 (461)
T 1z7x_W 162 LASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGD 241 (461)
T ss_dssp HHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHH
T ss_pred HHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCCh
Confidence 45566789999999999998875444443 356999999999999864 46667788999999999998865
Q ss_pred CC-----CccccCCCCCcEEEccCCcCCcc----cccccCCCCCCCEEECcCcccccccCcccc-----CCCCCcEEEcc
Q 047332 390 PI-----PKSFKNLTSVERVLLNQNNLSGK----VYEAFGDHPNLTFLNLSQNNFCGEISFNWR-----NFPKLGTFIVS 455 (614)
Q Consensus 390 ~~-----~~~~~~~~~L~~L~l~~n~~~~~----~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~-----~~~~L~~L~l~ 455 (614)
.. +..+..+++|++|++++|.++.. .+..+..+++|++|++++|.+.+..+..+. ..++|+.|+++
T Consensus 242 ~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~ 321 (461)
T 1z7x_W 242 VGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVK 321 (461)
T ss_dssp HHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECT
T ss_pred HHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcC
Confidence 32 22334689999999999999865 455667799999999999998754332222 22455555555
Q ss_pred cCcccccCCccCCCCCCCCEEeCCCCcCccccchhccCCCCCCEeeccCCccccCcccccc-----CCCCCCEEeCCCCc
Q 047332 456 VNNISGSIPPEIGDSPKLQVLDLSSNSIVGEIPVQLGKLFSLNKLILNLNQLSGGMPLELG-----SLTELQYLDLSANK 530 (614)
Q Consensus 456 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~-----~l~~L~~L~ls~n~ 530 (614)
+|.+++.... .++..+..+++|++|++++|.+.+..+..+. ..++|++|++++|.
T Consensus 322 ~n~l~~~~~~--------------------~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~ 381 (461)
T 1z7x_W 322 SCSFTAACCS--------------------HFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCD 381 (461)
T ss_dssp TSCCBGGGHH--------------------HHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSC
T ss_pred CCCCchHHHH--------------------HHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCC
Confidence 5555433100 1233334444555555555544432222221 14455555555555
Q ss_pred Ccc----cCCccccccCCCCEEeCCCCcCCcCCChhhh-----cCCCCCeeeCCCCCCC
Q 047332 531 LKS----SIPKSIGNLLRLRYLDLSNNQFGHKIPIELE-----KLIHLSELDLSYNFLG 580 (614)
Q Consensus 531 l~~----~~~~~l~~l~~L~~L~l~~n~~~~~~p~~l~-----~l~~L~~L~L~~n~~~ 580 (614)
+++ .+|..+..+++|++|++++|++++.....+. ....|+.|++.++.+.
T Consensus 382 i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~~~~~~~l~~~l~~~~~~L~~L~~~~~~~~ 440 (461)
T 1z7x_W 382 VSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWS 440 (461)
T ss_dssp CCHHHHHHHHHHHHHCCCCCEEECCSSSCCHHHHHHHHHHHTSTTCCCCEEECTTCCCC
T ss_pred CChhhHHHHHHHHHhCCCccEEECCCCCCCHHHHHHHHHHhccCCcchhheeecccccC
Confidence 554 4455555555666666666655443222221 1234555555555444
No 49
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.97 E-value=4.3e-30 Score=257.36 Aligned_cols=288 Identities=24% Similarity=0.244 Sum_probs=216.3
Q ss_pred CCCEEeccCCcCccccCccccCCCCCCEEecCCCcccccCCccCCCCCCCCEeecCCCcccccCCccccCCCCCCEEEcc
Q 047332 256 SLLQLDLSENQLIGSIPLSFGNLSRLTLMSLFNNLLSGSLPPILGNLKSLSALGLHINQLSGVIPSSIGNLSSLRALYLY 335 (614)
Q Consensus 256 ~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~ 335 (614)
+++.++++++.+. .+|..+ .++|++|++++|.+.+..+..+..+++|++|++++|.+++..|..+..+++|++|+++
T Consensus 34 ~l~~l~~~~~~l~-~ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 110 (332)
T 2ft3_A 34 HLRVVQCSDLGLK-AVPKEI--SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYIS 110 (332)
T ss_dssp ETTEEECCSSCCS-SCCSCC--CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECC
T ss_pred cCCEEECCCCCcc-ccCCCC--CCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECC
Confidence 6999999999887 666655 3789999999999998878889999999999999999998888999999999999999
Q ss_pred CCcccccCcccccCCCCCcEEEcccccCCccCCccccCCCCCCEEECcCCCCCC--CCCccccCCCCCcEEEccCCcCCc
Q 047332 336 NNGLCGFVPEEIRYLKSLSELELCKNHLSGVIPHSIGNLTGLLLLNMCENHLSG--PIPKSFKNLTSVERVLLNQNNLSG 413 (614)
Q Consensus 336 ~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~ls~n~l~~--~~~~~~~~~~~L~~L~l~~n~~~~ 413 (614)
+|.+.. +|..+. ++|++|++++|.+++..+..+..+++|+.|++++|.++. ..+..+..+ +|+.|++++|.+++
T Consensus 111 ~n~l~~-l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~~ 186 (332)
T 2ft3_A 111 KNHLVE-IPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLTG 186 (332)
T ss_dssp SSCCCS-CCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCSS
T ss_pred CCcCCc-cCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCCc
Confidence 999985 444433 799999999999997777789999999999999999863 566666666 77777777777664
Q ss_pred ccccccCCCCCCCEEECcCcccccccCccccCCCCCcEEEcccCcccccCCccCCCCCCCCEEeCCCCcCccccchhccC
Q 047332 414 KVYEAFGDHPNLTFLNLSQNNFCGEISFNWRNFPKLGTFIVSVNNISGSIPPEIGDSPKLQVLDLSSNSIVGEIPVQLGK 493 (614)
Q Consensus 414 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~ 493 (614)
. +..+ .++|++|+++ +|.+++..+..+..+++|++|++++|.+.+..+..+..
T Consensus 187 l-~~~~--~~~L~~L~l~------------------------~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~ 239 (332)
T 2ft3_A 187 I-PKDL--PETLNELHLD------------------------HNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSF 239 (332)
T ss_dssp C-CSSS--CSSCSCCBCC------------------------SSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGG
T ss_pred c-Cccc--cCCCCEEECC------------------------CCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhC
Confidence 2 2221 1344444444 44444444455556666666666666666555556666
Q ss_pred CCCCCEeeccCCccccCccccccCCCCCCEEeCCCCcCcccCCccccc------cCCCCEEeCCCCcCC--cCCChhhhc
Q 047332 494 LFSLNKLILNLNQLSGGMPLELGSLTELQYLDLSANKLKSSIPKSIGN------LLRLRYLDLSNNQFG--HKIPIELEK 565 (614)
Q Consensus 494 ~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~l~~------l~~L~~L~l~~n~~~--~~~p~~l~~ 565 (614)
+++|++|++++|.++ .+|..+..+++|+.|++++|.+++..+..|.. ..+|+.|++++|++. +..|..|..
T Consensus 240 l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~ 318 (332)
T 2ft3_A 240 LPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRC 318 (332)
T ss_dssp CTTCCEEECCSSCCC-BCCTTGGGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTT
T ss_pred CCCCCEEECCCCcCe-ecChhhhcCccCCEEECCCCCCCccChhHccccccccccccccceEeecCcccccccCcccccc
Confidence 777777777777776 56666777777777777777777655555543 356888888888876 566777888
Q ss_pred CCCCCeeeCCCCC
Q 047332 566 LIHLSELDLSYNF 578 (614)
Q Consensus 566 l~~L~~L~L~~n~ 578 (614)
+++|+.+++++|+
T Consensus 319 l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 319 VTDRLAIQFGNYK 331 (332)
T ss_dssp BCCSTTEEC----
T ss_pred cchhhhhhccccc
Confidence 8888888888874
No 50
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.96 E-value=3.3e-32 Score=295.60 Aligned_cols=407 Identities=14% Similarity=0.053 Sum_probs=184.4
Q ss_pred CccccCCCCCcEEEeccccCC---CCCCcccC------------CCCCCcEEEeecCCCcccCCccccC-CCC-CCeeec
Q 047332 152 PPEIGQLSLINVLALCHNNLY---GSIPSSLG------------NLSNLANFYFNNNSLFDSIPLVLGN-LNS-LSTMDL 214 (614)
Q Consensus 152 ~~~~~~l~~L~~L~l~~~~l~---~~~~~~l~------------~l~~L~~L~l~~~~~~~~~~~~l~~-l~~-L~~L~l 214 (614)
+..+..+++|++|+++++... +.+|..++ .+++|++|++++|.+.+..+..+.. +++ |++|++
T Consensus 66 ~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L 145 (592)
T 3ogk_B 66 DRLSRRFPNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKL 145 (592)
T ss_dssp HHHHHHCTTCSEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEE
T ss_pred HHHHHhCCCCeEEEecCCcchhhcccccccccccchHHHHHHHhhCCCCCeEEeeccEecHHHHHHHHHhccccCcEEEC
Confidence 344566788888888775321 22222222 4455555555555444433333332 222 555555
Q ss_pred cCcc-CCc-cCCccccCCCCCCeEEcccCccccc----cchhccCCCCCCEEeccCCcCc----cccCccccCCCCCCEE
Q 047332 215 SQNQ-FSG-SIPLSLGNLSNLGILYLYSNSFSGS----IPSIIGNLKSLLQLDLSENQLI----GSIPLSFGNLSRLTLM 284 (614)
Q Consensus 215 ~~~~-~~~-~~~~~l~~l~~L~~L~L~~~~~~~~----~~~~l~~l~~L~~L~L~~n~~~----~~~~~~l~~l~~L~~L 284 (614)
++|. ++. .++.....+++|++|++++|.+++. ++.....+++|++|++++|.+. +.++..+..+++|++|
T Consensus 146 ~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L 225 (592)
T 3ogk_B 146 DKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSV 225 (592)
T ss_dssp ESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEE
T ss_pred cCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEE
Confidence 5443 110 0111122344555555555544332 2222334445555555554443 1222223344445555
Q ss_pred ecCCCcccccCCccCCCCCCCCEeecCCCcccccCCccccCCCCCCEEEccCCcccccCcccccCCCCCcEEEcccccCC
Q 047332 285 SLFNNLLSGSLPPILGNLKSLSALGLHINQLSGVIPSSIGNLSSLRALYLYNNGLCGFVPEEIRYLKSLSELELCKNHLS 364 (614)
Q Consensus 285 ~L~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~ 364 (614)
++++|.+.+ ++..+..+++|++|+++....... ....+..+..+++|+.++++++...
T Consensus 226 ~L~~~~~~~-l~~~~~~~~~L~~L~l~~~~~~~~---------------------~~~~~~~l~~~~~L~~L~l~~~~~~ 283 (592)
T 3ogk_B 226 KVGDFEILE-LVGFFKAAANLEEFCGGSLNEDIG---------------------MPEKYMNLVFPRKLCRLGLSYMGPN 283 (592)
T ss_dssp ECSSCBGGG-GHHHHHHCTTCCEEEECBCCCCTT---------------------CTTSSSCCCCCTTCCEEEETTCCTT
T ss_pred eccCccHHH-HHHHHhhhhHHHhhcccccccccc---------------------hHHHHHHhhccccccccCccccchh
Confidence 555444442 333344444444444433211100 0112223344445555555443221
Q ss_pred ccCCccccCCCCCCEEECcCCCCCCCCC-ccccCCCCCcEEEccCCcCCc-ccccccCCCCCCCEEECcC----------
Q 047332 365 GVIPHSIGNLTGLLLLNMCENHLSGPIP-KSFKNLTSVERVLLNQNNLSG-KVYEAFGDHPNLTFLNLSQ---------- 432 (614)
Q Consensus 365 ~~~~~~~~~l~~L~~L~ls~n~l~~~~~-~~~~~~~~L~~L~l~~n~~~~-~~~~~~~~~~~L~~L~l~~---------- 432 (614)
.+|..+..+++|++|++++|.+++... ..+..+++|++|++.+ .+.. ........+++|++|++++
T Consensus 284 -~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~-~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~ 361 (592)
T 3ogk_B 284 -EMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRN-VIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDE 361 (592)
T ss_dssp -TGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEEG-GGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSST
T ss_pred -HHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEeccC-ccCHHHHHHHHHhCCCCCEEEeecCccccccccc
Confidence 334444445555555555555432211 2234555555555552 2221 1122223455566666552
Q ss_pred -ccccccc-CccccCCCCCcEEEcccCcccccCCccCCC-CCCCCEEeCC----CCcCccc-----cchhccCCCCCCEe
Q 047332 433 -NNFCGEI-SFNWRNFPKLGTFIVSVNNISGSIPPEIGD-SPKLQVLDLS----SNSIVGE-----IPVQLGKLFSLNKL 500 (614)
Q Consensus 433 -~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~-~~~L~~L~l~----~~~~~~~-----~~~~~~~~~~L~~L 500 (614)
+.+++.. ......+++|+.|++..+.+++..+..+.. +++|+.|+++ .+.+++. ++..+..+++|++|
T Consensus 362 ~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L 441 (592)
T 3ogk_B 362 EGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRF 441 (592)
T ss_dssp TCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEE
T ss_pred cCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEE
Confidence 2333221 111233556666666555555444333333 5566666664 3344431 23334456666666
Q ss_pred eccCCc--cccCccccc-cCCCCCCEEeCCCCcCccc-CCccccccCCCCEEeCCCCcCCcCC-ChhhhcCCCCCeeeCC
Q 047332 501 ILNLNQ--LSGGMPLEL-GSLTELQYLDLSANKLKSS-IPKSIGNLLRLRYLDLSNNQFGHKI-PIELEKLIHLSELDLS 575 (614)
Q Consensus 501 ~l~~n~--~~~~~~~~~-~~l~~L~~L~ls~n~l~~~-~~~~l~~l~~L~~L~l~~n~~~~~~-p~~l~~l~~L~~L~L~ 575 (614)
++++|. +++..+..+ ..+++|++|++++|.+++. ++..+..+++|++|++++|++++.. +..+..+++|++|+|+
T Consensus 442 ~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls 521 (592)
T 3ogk_B 442 AFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQ 521 (592)
T ss_dssp EEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEE
T ss_pred EEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECc
Confidence 665433 333322222 2356666666666666542 2334455666666666666664432 2333456666666666
Q ss_pred CCCCCCC
Q 047332 576 YNFLGEE 582 (614)
Q Consensus 576 ~n~~~~~ 582 (614)
+|+++..
T Consensus 522 ~n~it~~ 528 (592)
T 3ogk_B 522 GYRASMT 528 (592)
T ss_dssp SCBCCTT
T ss_pred CCcCCHH
Confidence 6666544
No 51
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.96 E-value=9.7e-32 Score=291.93 Aligned_cols=376 Identities=13% Similarity=0.048 Sum_probs=269.7
Q ss_pred CCCCCCeEEcccCccccccchhccC-CC-CCCEEeccCCcCc-c-ccCccccCCCCCCEEecCCCccccc----CCccCC
Q 047332 229 NLSNLGILYLYSNSFSGSIPSIIGN-LK-SLLQLDLSENQLI-G-SIPLSFGNLSRLTLMSLFNNLLSGS----LPPILG 300 (614)
Q Consensus 229 ~l~~L~~L~L~~~~~~~~~~~~l~~-l~-~L~~L~L~~n~~~-~-~~~~~l~~l~~L~~L~L~~~~~~~~----~~~~l~ 300 (614)
.+++|++|++++|.+++..+..+.. ++ +|++|++++|... . .++.....+++|++|++++|.+++. ++..+.
T Consensus 110 ~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~ 189 (592)
T 3ogk_B 110 NLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQ 189 (592)
T ss_dssp HCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHH
T ss_pred hCCCCCeEEeeccEecHHHHHHHHHhccccCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHh
Confidence 5667777777777666554444443 23 3777777776521 1 1112223567777777777776544 222345
Q ss_pred CCCCCCEeecCCCccc----ccCCccccCCCCCCEEEccCCcccccCcccccCCCCCcEEEcccccCC---ccCCccccC
Q 047332 301 NLKSLSALGLHINQLS----GVIPSSIGNLSSLRALYLYNNGLCGFVPEEIRYLKSLSELELCKNHLS---GVIPHSIGN 373 (614)
Q Consensus 301 ~l~~L~~L~L~~n~l~----~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~---~~~~~~~~~ 373 (614)
.+++|++|++++|.++ +.++..+..+++|+.|++++|.+.+ ++..+..+++|++|+++..... ...+..+..
T Consensus 190 ~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~-l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~ 268 (592)
T 3ogk_B 190 HNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILE-LVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVF 268 (592)
T ss_dssp HCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGG-GHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCC
T ss_pred cCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHH-HHHHHhhhhHHHhhcccccccccchHHHHHHhhc
Confidence 6678888888888776 2334445678899999999888876 5677788889999998764322 233456677
Q ss_pred CCCCCEEECcCCCCCCCCCccccCCCCCcEEEccCCcCCcccc-cccCCCCCCCEEECcCcccccccCccccCCCCCcEE
Q 047332 374 LTGLLLLNMCENHLSGPIPKSFKNLTSVERVLLNQNNLSGKVY-EAFGDHPNLTFLNLSQNNFCGEISFNWRNFPKLGTF 452 (614)
Q Consensus 374 l~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L 452 (614)
+++|+.++++++. ...++..+..+++|++|++++|.+++... ..+..+++|++|+++++...+.++.....+++|+.|
T Consensus 269 ~~~L~~L~l~~~~-~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L 347 (592)
T 3ogk_B 269 PRKLCRLGLSYMG-PNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRL 347 (592)
T ss_dssp CTTCCEEEETTCC-TTTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEE
T ss_pred cccccccCccccc-hhHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEeccCccCHHHHHHHHHhCCCCCEE
Confidence 8899999998853 34677788889999999999999775544 346889999999999443333344445678999999
Q ss_pred Eccc-----------Cccccc-CCccCCCCCCCCEEeCCCCcCccccchhccC-CCCCCEeecc----CCccccC-----
Q 047332 453 IVSV-----------NNISGS-IPPEIGDSPKLQVLDLSSNSIVGEIPVQLGK-LFSLNKLILN----LNQLSGG----- 510 (614)
Q Consensus 453 ~l~~-----------~~~~~~-~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~-~~~L~~L~l~----~n~~~~~----- 510 (614)
++++ +.+++. +......+++|++|++..+.+++..+..+.. +++|++|+++ .|.+++.
T Consensus 348 ~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~ 427 (592)
T 3ogk_B 348 RIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNG 427 (592)
T ss_dssp EEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHH
T ss_pred EeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHH
Confidence 9994 455533 2222345899999999888888777766665 8999999997 5567653
Q ss_pred ccccccCCCCCCEEeCCCCc--CcccCCcccc-ccCCCCEEeCCCCcCCcC-CChhhhcCCCCCeeeCCCCCCCCC-CCc
Q 047332 511 MPLELGSLTELQYLDLSANK--LKSSIPKSIG-NLLRLRYLDLSNNQFGHK-IPIELEKLIHLSELDLSYNFLGEE-IPF 585 (614)
Q Consensus 511 ~~~~~~~l~~L~~L~ls~n~--l~~~~~~~l~-~l~~L~~L~l~~n~~~~~-~p~~l~~l~~L~~L~L~~n~~~~~-~p~ 585 (614)
++..+.++++|+.|++++|. +++..+..+. .+++|+.|++++|++++. ++..+.++++|++|+|++|++.+. ++.
T Consensus 428 ~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~ 507 (592)
T 3ogk_B 428 VRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAA 507 (592)
T ss_dssp HHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHH
T ss_pred HHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHH
Confidence 33446789999999998754 6655555554 489999999999999874 455567899999999999998654 444
Q ss_pred cccCCCCCCeEECcCCCCccc
Q 047332 586 QICNVKSLEKLNLCHNNLLGS 606 (614)
Q Consensus 586 ~l~~l~sL~~L~l~~n~l~~~ 606 (614)
....+++|++|++++|++++.
T Consensus 508 ~~~~l~~L~~L~ls~n~it~~ 528 (592)
T 3ogk_B 508 AVTKLPSLRYLWVQGYRASMT 528 (592)
T ss_dssp HHHHCSSCCEEEEESCBCCTT
T ss_pred HHHhcCccCeeECcCCcCCHH
Confidence 446789999999999998765
No 52
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.96 E-value=1.5e-28 Score=243.39 Aligned_cols=250 Identities=23% Similarity=0.264 Sum_probs=159.1
Q ss_pred ccccceeeCCCCCEEEEEcCCCCCCcccCcccccCCCCCcEEECCCCCCCccCcccccCCCCCCEEeCCCCCCCCC--CC
Q 047332 51 CAWLGISCNQAGRVISINLSSMALNGTLQEFAFSSFPHLVQLNLSFNIFFGIIPPQIGNLSKLQYLDLGSNQLSGV--IP 128 (614)
Q Consensus 51 c~w~~~~c~~~~~v~~l~l~~~~l~~~~~~~~~~~l~~L~~L~Ls~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~--~~ 128 (614)
|.|.++.|...+ ++ .+|. .-.++|++|++++|.++...+..|.++++|++|++++|.++.. .+
T Consensus 7 C~~~~l~c~~~~-----------l~-~ip~---~~~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~ 71 (306)
T 2z66_A 7 CSGTEIRCNSKG-----------LT-SVPT---GIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCS 71 (306)
T ss_dssp EETTEEECCSSC-----------CS-SCCS---CCCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEE
T ss_pred eCCCEEEcCCCC-----------cc-cCCC---CCCCCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcc
Confidence 788888886432 11 1222 1235788888888888765555678888888888888887732 24
Q ss_pred cCCCCCCCCCEEEcccccCCCCCCccccCCCCCcEEEeccccCCCCCC-cccCCCCCCcEEEeecCCCcccCCccccCCC
Q 047332 129 PEIGHLNQLRILYFDVNQLHGSIPPEIGQLSLINVLALCHNNLYGSIP-SSLGNLSNLANFYFNNNSLFDSIPLVLGNLN 207 (614)
Q Consensus 129 ~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~-~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~ 207 (614)
..+..+++|++|++++|.+. .+|..+.++++|++|++++|.+++..+ ..+..+++|++|++++|.+.+..+..+..++
T Consensus 72 ~~~~~~~~L~~L~Ls~n~i~-~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~ 150 (306)
T 2z66_A 72 QSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLS 150 (306)
T ss_dssp HHHHSCSCCCEEECCSCSEE-EEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCT
T ss_pred cccccccccCEEECCCCccc-cChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCc
Confidence 55667888888888888776 566677778888888888887775443 4566677777777777766666666666666
Q ss_pred CCCeeeccCccCCc-cCCccccCCCCCCeEEcccCccccccchhccCCCCCCEEeccCCcCccccCccccCCCCCCEEec
Q 047332 208 SLSTMDLSQNQFSG-SIPLSLGNLSNLGILYLYSNSFSGSIPSIIGNLKSLLQLDLSENQLIGSIPLSFGNLSRLTLMSL 286 (614)
Q Consensus 208 ~L~~L~l~~~~~~~-~~~~~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L 286 (614)
+|++|++++|.+.+ ..|..+..+++|++|++++|.+++..|..+..+++|++|++++|.+.+..+..+..+++|++|++
T Consensus 151 ~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L 230 (306)
T 2z66_A 151 SLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDY 230 (306)
T ss_dssp TCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEEC
T ss_pred CCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeEC
Confidence 66666666666654 34555556666666666666665554555555556666666666555444444555555555555
Q ss_pred CCCcccccCCccCCCCC-CCCEeecCCCccc
Q 047332 287 FNNLLSGSLPPILGNLK-SLSALGLHINQLS 316 (614)
Q Consensus 287 ~~~~~~~~~~~~l~~l~-~L~~L~L~~n~l~ 316 (614)
++|.+++..+..+..++ +|++|++++|.++
T Consensus 231 ~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~ 261 (306)
T 2z66_A 231 SLNHIMTSKKQELQHFPSSLAFLNLTQNDFA 261 (306)
T ss_dssp TTSCCCBCSSSSCCCCCTTCCEEECTTCCEE
T ss_pred CCCCCcccCHHHHHhhhccCCEEEccCCCee
Confidence 55555555554444442 4555555555544
No 53
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.96 E-value=1.2e-28 Score=249.05 Aligned_cols=279 Identities=18% Similarity=0.155 Sum_probs=171.7
Q ss_pred CCCCCCEeecCCCcccccCCccccCCCCCCEEEccCCcccccCcccccCCCCCcEEEcccccCCccCCccccCCCCCCEE
Q 047332 301 NLKSLSALGLHINQLSGVIPSSIGNLSSLRALYLYNNGLCGFVPEEIRYLKSLSELELCKNHLSGVIPHSIGNLTGLLLL 380 (614)
Q Consensus 301 ~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L 380 (614)
.|+.....+.+++.++ .+|..+. ++|++|++++|.+.+..+..+..+++|++|++++|.+++..+..|..+++|++|
T Consensus 29 ~C~~~~~c~~~~~~l~-~iP~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 105 (353)
T 2z80_A 29 SCDRNGICKGSSGSLN-SIPSGLT--EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHL 105 (353)
T ss_dssp EECTTSEEECCSTTCS-SCCTTCC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEE
T ss_pred CCCCCeEeeCCCCCcc-ccccccc--ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEE
Confidence 3444555677777777 4555443 478888888888877666677777888888888887777666777777778888
Q ss_pred ECcCCCCCCCCCccccCCCCCcEEEccCCcCCcccc-cccCCCCCCCEEECcCcc-cccccCccccCCCCCcEEEcccCc
Q 047332 381 NMCENHLSGPIPKSFKNLTSVERVLLNQNNLSGKVY-EAFGDHPNLTFLNLSQNN-FCGEISFNWRNFPKLGTFIVSVNN 458 (614)
Q Consensus 381 ~ls~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~-~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~~~~L~~L~l~~~~ 458 (614)
++++|.+++..+..|..+++|++|++++|++..... ..+..+++|++|++++|. +.+..+..+..+++|+.|++++|.
T Consensus 106 ~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~ 185 (353)
T 2z80_A 106 DLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASD 185 (353)
T ss_dssp ECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETT
T ss_pred ECCCCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCC
Confidence 888777776555557777777777777777765444 456677777777777773 444445566667777777777777
Q ss_pred ccccCCccCCCCCCCCEEeCCCCcCccccchhccCCCCCCEeeccCCccccCccccc---cCCCCCCEEeCCCCcCcc--
Q 047332 459 ISGSIPPEIGDSPKLQVLDLSSNSIVGEIPVQLGKLFSLNKLILNLNQLSGGMPLEL---GSLTELQYLDLSANKLKS-- 533 (614)
Q Consensus 459 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~---~~l~~L~~L~ls~n~l~~-- 533 (614)
+++..|..+..+++|++|++++|.+.......+..+++|++|++++|.+++..+..+ ...+.++.++++++.+.+
T Consensus 186 l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~ 265 (353)
T 2z80_A 186 LQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDES 265 (353)
T ss_dssp CCEECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHH
T ss_pred cCccCHHHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCccccccccccccccccchhhccccccccccCcc
Confidence 766666666666777777777776653322333446666677777666665433322 223445555555554443
Q ss_pred --cCCccccccCCCCEEeCCCCcCCcCCChhhhcCCCCCeeeCCCCCCCCC
Q 047332 534 --SIPKSIGNLLRLRYLDLSNNQFGHKIPIELEKLIHLSELDLSYNFLGEE 582 (614)
Q Consensus 534 --~~~~~l~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~L~~n~~~~~ 582 (614)
.+|+.+..+++|+.|++++|+++...+..|.++++|++|++++|++.+.
T Consensus 266 l~~l~~~l~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~~~~~ 316 (353)
T 2z80_A 266 LFQVMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCS 316 (353)
T ss_dssp HHHHHHHHHTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCCC
T ss_pred hhhhHHHHhcccCCCEEECCCCCCCccCHHHHhcCCCCCEEEeeCCCccCc
Confidence 2344444555555555555555422222234455555555555555443
No 54
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.96 E-value=1.5e-27 Score=236.19 Aligned_cols=248 Identities=25% Similarity=0.236 Sum_probs=122.3
Q ss_pred EEEccCCcccccCcccccCCCCCcEEEcccccCCccCCccccCCCCCCEEECcCCCCCCC--CCccccCCCCCcEEEccC
Q 047332 331 ALYLYNNGLCGFVPEEIRYLKSLSELELCKNHLSGVIPHSIGNLTGLLLLNMCENHLSGP--IPKSFKNLTSVERVLLNQ 408 (614)
Q Consensus 331 ~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~ls~n~l~~~--~~~~~~~~~~L~~L~l~~ 408 (614)
.++.+++.++. +|..+ .+++++|++++|.++...+..|..+++|++|++++|.++.. .+..+..+++|++|++++
T Consensus 11 ~l~c~~~~l~~-ip~~~--~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~ 87 (306)
T 2z66_A 11 EIRCNSKGLTS-VPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSF 87 (306)
T ss_dssp EEECCSSCCSS-CCSCC--CTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCS
T ss_pred EEEcCCCCccc-CCCCC--CCCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCC
Confidence 45555555543 22222 24555555555555533333345555555555555554421 123333445555555555
Q ss_pred CcCCcccccccCCCCCCCEEECcCcccccccCccccCCCCCcEEEcccCcccccCCccCCCCCCCCEEeCCCCcCccccc
Q 047332 409 NNLSGKVYEAFGDHPNLTFLNLSQNNFCGEISFNWRNFPKLGTFIVSVNNISGSIPPEIGDSPKLQVLDLSSNSIVGEIP 488 (614)
Q Consensus 409 n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~ 488 (614)
|.+.. .+..+..+++|++|++++|.+.+..+ ...+..+++|++|++++|.+.+..+
T Consensus 88 n~i~~-l~~~~~~l~~L~~L~l~~n~l~~~~~-----------------------~~~~~~l~~L~~L~l~~n~l~~~~~ 143 (306)
T 2z66_A 88 NGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSE-----------------------FSVFLSLRNLIYLDISHTHTRVAFN 143 (306)
T ss_dssp CSEEE-EEEEEETCTTCCEEECTTSEEESSTT-----------------------TTTTTTCTTCCEEECTTSCCEECST
T ss_pred Ccccc-ChhhcCCCCCCCEEECCCCccccccc-----------------------chhhhhccCCCEEECCCCcCCccch
Confidence 54442 23334444455555555544443322 0234445555555555555544444
Q ss_pred hhccCCCCCCEeeccCCcccc-CccccccCCCCCCEEeCCCCcCcccCCccccccCCCCEEeCCCCcCCcCCChhhhcCC
Q 047332 489 VQLGKLFSLNKLILNLNQLSG-GMPLELGSLTELQYLDLSANKLKSSIPKSIGNLLRLRYLDLSNNQFGHKIPIELEKLI 567 (614)
Q Consensus 489 ~~~~~~~~L~~L~l~~n~~~~-~~~~~~~~l~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~l~~l~ 567 (614)
..+..+++|++|++++|.+.+ ..|..+..+++|++|++++|.+.+..|..+..+++|++|++++|++++..+..+..++
T Consensus 144 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~ 223 (306)
T 2z66_A 144 GIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLN 223 (306)
T ss_dssp TTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCT
T ss_pred hhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcc
Confidence 445555555555555555543 2444455555555555555555544455555555555555555555544444455555
Q ss_pred CCCeeeCCCCCCCCCCCccccCC-CCCCeEECcCCCCcc
Q 047332 568 HLSELDLSYNFLGEEIPFQICNV-KSLEKLNLCHNNLLG 605 (614)
Q Consensus 568 ~L~~L~L~~n~~~~~~p~~l~~l-~sL~~L~l~~n~l~~ 605 (614)
+|++|++++|++.+..|..+..+ ++|++|++++|++.+
T Consensus 224 ~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~ 262 (306)
T 2z66_A 224 SLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFAC 262 (306)
T ss_dssp TCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEEC
T ss_pred cCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCeec
Confidence 55555555555555555555544 255555555555544
No 55
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.96 E-value=5.2e-28 Score=240.94 Aligned_cols=237 Identities=23% Similarity=0.257 Sum_probs=203.1
Q ss_pred CCCCCcEEECCCCCCCccCcccccCCCCCCEEeCCCCCCCCCCCcCCCCCCCCCEEEcccccCCCCCCccccCCCCCcEE
Q 047332 85 SFPHLVQLNLSFNIFFGIIPPQIGNLSKLQYLDLGSNQLSGVIPPEIGHLNQLRILYFDVNQLHGSIPPEIGQLSLINVL 164 (614)
Q Consensus 85 ~l~~L~~L~Ls~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L 164 (614)
..+++++|+|++|.++ .+|..+.++++|++|++++|.++ .+|..++.+++|++|++++|.+. .+|..+.++++|++|
T Consensus 79 ~~~~l~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L 155 (328)
T 4fcg_A 79 TQPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLREL 155 (328)
T ss_dssp TSTTCCEEEEESSCCS-SCCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEE
T ss_pred cccceeEEEccCCCch-hcChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEE
Confidence 4577888888888877 46777777888888888888888 77878888888888888888887 778888888888888
Q ss_pred EeccccCCCCCCcccCCCCCCcEEEeecCCCcccCCccccCCCCCCeeeccCccCCccCCccccCCCCCCeEEcccCccc
Q 047332 165 ALCHNNLYGSIPSSLGNLSNLANFYFNNNSLFDSIPLVLGNLNSLSTMDLSQNQFSGSIPLSLGNLSNLGILYLYSNSFS 244 (614)
Q Consensus 165 ~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~ 244 (614)
++++|++.+.+|..+.. . ..+..+..+++|++|++++|.++ .+|..+..+++|++|++++|.++
T Consensus 156 ~L~~n~~~~~~p~~~~~------~---------~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~ 219 (328)
T 4fcg_A 156 SIRACPELTELPEPLAS------T---------DASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLS 219 (328)
T ss_dssp EEEEETTCCCCCSCSEE------E---------C-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCC
T ss_pred ECCCCCCccccChhHhh------c---------cchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCC
Confidence 88887777777665432 1 11234667899999999999999 78899999999999999999998
Q ss_pred cccchhccCCCCCCEEeccCCcCccccCccccCCCCCCEEecCCCcccccCCccCCCCCCCCEeecCCCcccccCCcccc
Q 047332 245 GSIPSIIGNLKSLLQLDLSENQLIGSIPLSFGNLSRLTLMSLFNNLLSGSLPPILGNLKSLSALGLHINQLSGVIPSSIG 324 (614)
Q Consensus 245 ~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~ 324 (614)
.+|..+..+++|++|++++|.+.+.+|..+..+++|++|++++|.+.+.+|..+..+++|++|++++|++.+.+|..+.
T Consensus 220 -~l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~ 298 (328)
T 4fcg_A 220 -ALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIA 298 (328)
T ss_dssp -CCCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGG
T ss_pred -cCchhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHh
Confidence 5677799999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCEEEccCCcccc
Q 047332 325 NLSSLRALYLYNNGLCG 341 (614)
Q Consensus 325 ~~~~L~~L~l~~n~~~~ 341 (614)
.+++|+.+.+..+.+..
T Consensus 299 ~L~~L~~l~l~~~~~~~ 315 (328)
T 4fcg_A 299 QLPANCIILVPPHLQAQ 315 (328)
T ss_dssp GSCTTCEEECCGGGSCC
T ss_pred hccCceEEeCCHHHHHH
Confidence 99999999998765543
No 56
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.95 E-value=7.5e-28 Score=243.25 Aligned_cols=280 Identities=19% Similarity=0.223 Sum_probs=217.2
Q ss_pred CCCCCCEEecCCCcccccCCccCCCCCCCCEeecCCCcccccCCccccCCCCCCEEEccCCcccccCcccccCCCCCcEE
Q 047332 277 NLSRLTLMSLFNNLLSGSLPPILGNLKSLSALGLHINQLSGVIPSSIGNLSSLRALYLYNNGLCGFVPEEIRYLKSLSEL 356 (614)
Q Consensus 277 ~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L 356 (614)
.++.....+.+++.++ .+|..+. ++|++|++++|++++..+..+..+++|+.|++++|.+.+..+..+..+++|++|
T Consensus 29 ~C~~~~~c~~~~~~l~-~iP~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 105 (353)
T 2z80_A 29 SCDRNGICKGSSGSLN-SIPSGLT--EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHL 105 (353)
T ss_dssp EECTTSEEECCSTTCS-SCCTTCC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEE
T ss_pred CCCCCeEeeCCCCCcc-ccccccc--ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEE
Confidence 3455566788888887 5565443 588999999998887666678888899999999998888877888888899999
Q ss_pred EcccccCCccCCccccCCCCCCEEECcCCCCCCCCC-ccccCCCCCcEEEccCC-cCCcccccccCCCCCCCEEECcCcc
Q 047332 357 ELCKNHLSGVIPHSIGNLTGLLLLNMCENHLSGPIP-KSFKNLTSVERVLLNQN-NLSGKVYEAFGDHPNLTFLNLSQNN 434 (614)
Q Consensus 357 ~l~~n~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~-~~~~~~~~L~~L~l~~n-~~~~~~~~~~~~~~~L~~L~l~~~~ 434 (614)
++++|.+++..+..+..+++|++|++++|.++.... ..+..+++|++|++++| .+....+..+..+++|++|++++|.
T Consensus 106 ~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~ 185 (353)
T 2z80_A 106 DLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASD 185 (353)
T ss_dssp ECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETT
T ss_pred ECCCCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCC
Confidence 999998886555557888899999999988886544 47888889999999888 4666666778888899999999988
Q ss_pred cccccCccccCCCCCcEEEcccCcccccCCccCCCCCCCCEEeCCCCcCccccchhc---cCCCCCCEeeccCCcccc--
Q 047332 435 FCGEISFNWRNFPKLGTFIVSVNNISGSIPPEIGDSPKLQVLDLSSNSIVGEIPVQL---GKLFSLNKLILNLNQLSG-- 509 (614)
Q Consensus 435 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~---~~~~~L~~L~l~~n~~~~-- 509 (614)
+.+..+..+..+++|+.|++++|.+.......+..+++|++|++++|.+.+..+..+ .....++.++++++.+.+
T Consensus 186 l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~ 265 (353)
T 2z80_A 186 LQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDES 265 (353)
T ss_dssp CCEECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHH
T ss_pred cCccCHHHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCccccccccccccccccchhhccccccccccCcc
Confidence 888878888888899999998888764333334457889999999988875443332 345677888888887765
Q ss_pred --CccccccCCCCCCEEeCCCCcCcccCCcc-ccccCCCCEEeCCCCcCCcCCC
Q 047332 510 --GMPLELGSLTELQYLDLSANKLKSSIPKS-IGNLLRLRYLDLSNNQFGHKIP 560 (614)
Q Consensus 510 --~~~~~~~~l~~L~~L~ls~n~l~~~~~~~-l~~l~~L~~L~l~~n~~~~~~p 560 (614)
.+|..+..+++|++|++++|.++ .+|.. |..+++|++|++++|++.+..|
T Consensus 266 l~~l~~~l~~l~~L~~L~Ls~N~l~-~i~~~~~~~l~~L~~L~L~~N~~~~~~~ 318 (353)
T 2z80_A 266 LFQVMKLLNQISGLLELEFSRNQLK-SVPDGIFDRLTSLQKIWLHTNPWDCSCP 318 (353)
T ss_dssp HHHHHHHHHTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred hhhhHHHHhcccCCCEEECCCCCCC-ccCHHHHhcCCCCCEEEeeCCCccCcCC
Confidence 25667788889999999999888 45544 5888899999999998877654
No 57
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.95 E-value=1.8e-26 Score=240.27 Aligned_cols=246 Identities=23% Similarity=0.246 Sum_probs=132.5
Q ss_pred CCEEEccCCcccccCcccccCCCCCcEEEcccccCCccCCccccCCCCCCEEECcCCCCCCCCCccccCCCCCcEEEccC
Q 047332 329 LRALYLYNNGLCGFVPEEIRYLKSLSELELCKNHLSGVIPHSIGNLTGLLLLNMCENHLSGPIPKSFKNLTSVERVLLNQ 408 (614)
Q Consensus 329 L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~l~~ 408 (614)
.+.++..+..+.. +|..+. ++++.|++++|.+++..+..|..+++|++|++++|.++...+..|.++++|++|++++
T Consensus 45 ~~~v~c~~~~l~~-iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~ 121 (440)
T 3zyj_A 45 FSKVICVRKNLRE-VPDGIS--TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFD 121 (440)
T ss_dssp SCEEECCSCCCSS-CCSCCC--TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCS
T ss_pred CCEEEeCCCCcCc-CCCCCC--CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCC
Confidence 4456666655554 333332 4666677776666665556666666666666666666655555666666666666666
Q ss_pred CcCCcccccccCCCCCCCEEECcCcccccccCccccCCCCCcEEEcccCcccccCC-ccCCCCCCCCEEeCCCCcCcccc
Q 047332 409 NNLSGKVYEAFGDHPNLTFLNLSQNNFCGEISFNWRNFPKLGTFIVSVNNISGSIP-PEIGDSPKLQVLDLSSNSIVGEI 487 (614)
Q Consensus 409 n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~ 487 (614)
|+++...+..+..+++|++|++++|.+....+..+..+++|+.|++++|+..+.++ ..+..+++|++|++++|.++ .+
T Consensus 122 n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~-~~ 200 (440)
T 3zyj_A 122 NRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR-EI 200 (440)
T ss_dssp SCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCS-SC
T ss_pred CcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCc-cc
Confidence 66665555556666666666666666655444455555555555555533322222 23445555555555555554 22
Q ss_pred chhccCCCCCCEeeccCCccccCccccccCCCCCCEEeCCCCcCcccCCccccccCCCCEEeCCCCcCCcCCChhhhcCC
Q 047332 488 PVQLGKLFSLNKLILNLNQLSGGMPLELGSLTELQYLDLSANKLKSSIPKSIGNLLRLRYLDLSNNQFGHKIPIELEKLI 567 (614)
Q Consensus 488 ~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~l~~l~ 567 (614)
| .+..+++|++|++++|.+++..|..|.++++|+.|++++|.+.+..+..|..+++|+.|+|++|++++..+..|..++
T Consensus 201 ~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~ 279 (440)
T 3zyj_A 201 P-NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLH 279 (440)
T ss_dssp C-CCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCT
T ss_pred c-ccCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhcccc
Confidence 2 244444555555555555444444444555555555555555444444444455555555555555444444444444
Q ss_pred CCCeeeCCCCCC
Q 047332 568 HLSELDLSYNFL 579 (614)
Q Consensus 568 ~L~~L~L~~n~~ 579 (614)
+|+.|+|++|++
T Consensus 280 ~L~~L~L~~Np~ 291 (440)
T 3zyj_A 280 HLERIHLHHNPW 291 (440)
T ss_dssp TCCEEECCSSCE
T ss_pred CCCEEEcCCCCc
Confidence 555555554443
No 58
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.95 E-value=2.8e-27 Score=231.52 Aligned_cols=225 Identities=20% Similarity=0.179 Sum_probs=169.9
Q ss_pred EEEEcCCCCCCcccCcccccCCCCCcEEECCCCCCCccCcccccCCCCCCEEeCCCCCCCCCCCcCCCCCCCCCEEEccc
Q 047332 65 ISINLSSMALNGTLQEFAFSSFPHLVQLNLSFNIFFGIIPPQIGNLSKLQYLDLGSNQLSGVIPPEIGHLNQLRILYFDV 144 (614)
Q Consensus 65 ~~l~l~~~~l~~~~~~~~~~~l~~L~~L~Ls~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~l~~ 144 (614)
+.+++++.+++.. |. ...++|++|++++|.+++..+..|..+++|++|++++|.+++..|..|..+++|++|++++
T Consensus 14 ~~~~c~~~~l~~i-p~---~~~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 89 (285)
T 1ozn_A 14 VTTSCPQQGLQAV-PV---GIPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSD 89 (285)
T ss_dssp CEEECCSSCCSSC-CT---TCCTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred eEEEcCcCCcccC-Cc---CCCCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCC
Confidence 4566666666533 22 2356899999999998887777888999999999999988877788888899999999999
Q ss_pred cc-CCCCCCccccCCCCCcEEEeccccCCCCCCcccCCCCCCcEEEeecCCCcccCCccccCCCCCCeeeccCccCCccC
Q 047332 145 NQ-LHGSIPPEIGQLSLINVLALCHNNLYGSIPSSLGNLSNLANFYFNNNSLFDSIPLVLGNLNSLSTMDLSQNQFSGSI 223 (614)
Q Consensus 145 n~-~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~ 223 (614)
|. +....|..+..+++|++|++++|.+++..+..+..+++|++|++++|.+.+..+..++.+++|++|++++|.+++..
T Consensus 90 n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 169 (285)
T 1ozn_A 90 NAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVP 169 (285)
T ss_dssp CTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEEC
T ss_pred CCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccC
Confidence 87 66555778888888888888888888777777788888888888888877666666777778888888877777555
Q ss_pred CccccCCCCCCeEEcccCccccccchhccCCCCCCEEeccCCcCccccCccccCCCCCCEEecCCCcccc
Q 047332 224 PLSLGNLSNLGILYLYSNSFSGSIPSIIGNLKSLLQLDLSENQLIGSIPLSFGNLSRLTLMSLFNNLLSG 293 (614)
Q Consensus 224 ~~~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~~~~~~ 293 (614)
+..+..+++|++|++++|.+++..|..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+..
T Consensus 170 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c 239 (285)
T 1ozn_A 170 ERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVC 239 (285)
T ss_dssp TTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEEC
T ss_pred HHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccC
Confidence 5556777777777777777776666667777777777777777665555556666777777777766653
No 59
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.95 E-value=2.3e-26 Score=240.34 Aligned_cols=248 Identities=24% Similarity=0.248 Sum_probs=133.9
Q ss_pred CCEEEccCCcccccCcccccCCCCCcEEEcccccCCccCCccccCCCCCCEEECcCCCCCCCCCccccCCCCCcEEEccC
Q 047332 329 LRALYLYNNGLCGFVPEEIRYLKSLSELELCKNHLSGVIPHSIGNLTGLLLLNMCENHLSGPIPKSFKNLTSVERVLLNQ 408 (614)
Q Consensus 329 L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~l~~ 408 (614)
...++.++..+.. +|..+ .+++++|++++|.+++..+..|..+++|+.|++++|.+++..+..|.++++|++|++++
T Consensus 56 ~~~v~c~~~~l~~-iP~~~--~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~ 132 (452)
T 3zyi_A 56 FSKVVCTRRGLSE-VPQGI--PSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFD 132 (452)
T ss_dssp SCEEECCSSCCSS-CCSCC--CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CcEEEECCCCcCc-cCCCC--CCCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCC
Confidence 3455555555554 33332 24666666666666665566666666666666666666655555666666666666666
Q ss_pred CcCCcccccccCCCCCCCEEECcCcccccccCccccCCCCCcEEEcccCcccccCCccCCCCCCCCEEeCCCCcCccccc
Q 047332 409 NNLSGKVYEAFGDHPNLTFLNLSQNNFCGEISFNWRNFPKLGTFIVSVNNISGSIPPEIGDSPKLQVLDLSSNSIVGEIP 488 (614)
Q Consensus 409 n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~ 488 (614)
|.++...+..+..+++|++|++++|.+....+..+..+++|+.|++++|+..+.++.
T Consensus 133 n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~----------------------- 189 (452)
T 3zyi_A 133 NWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISE----------------------- 189 (452)
T ss_dssp SCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECT-----------------------
T ss_pred CcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccCh-----------------------
Confidence 666555555555566666666666655544444455555555555555332222221
Q ss_pred hhccCCCCCCEeeccCCccccCccccccCCCCCCEEeCCCCcCcccCCccccccCCCCEEeCCCCcCCcCCChhhhcCCC
Q 047332 489 VQLGKLFSLNKLILNLNQLSGGMPLELGSLTELQYLDLSANKLKSSIPKSIGNLLRLRYLDLSNNQFGHKIPIELEKLIH 568 (614)
Q Consensus 489 ~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~l~~l~~ 568 (614)
..+..+++|++|++++|.+.+ +| .+..+++|+.|++++|.+.+..|..|..+++|+.|++++|++++..|..|.++++
T Consensus 190 ~~~~~l~~L~~L~L~~n~l~~-~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~ 267 (452)
T 3zyi_A 190 GAFEGLFNLKYLNLGMCNIKD-MP-NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLAS 267 (452)
T ss_dssp TTTTTCTTCCEEECTTSCCSS-CC-CCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTT
T ss_pred hhccCCCCCCEEECCCCcccc-cc-cccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCC
Confidence 234444445555555554442 22 2444555555555555555555555555555555555555555555555555555
Q ss_pred CCeeeCCCCCCCCCCCccccCCCCCCeEECcCCCCc
Q 047332 569 LSELDLSYNFLGEEIPFQICNVKSLEKLNLCHNNLL 604 (614)
Q Consensus 569 L~~L~L~~n~~~~~~p~~l~~l~sL~~L~l~~n~l~ 604 (614)
|++|+|++|++.+..+..|..+++|+.|++++|++.
T Consensus 268 L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~ 303 (452)
T 3zyi_A 268 LVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWN 303 (452)
T ss_dssp CCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCEE
T ss_pred CCEEECCCCcCCccChHHhccccCCCEEEccCCCcC
Confidence 555555555555544444555555555555555543
No 60
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.95 E-value=7.4e-27 Score=228.53 Aligned_cols=205 Identities=23% Similarity=0.251 Sum_probs=89.1
Q ss_pred CCCCEEEccCCcccccCcccccCCCCCcEEEcccccCCccCCccccCCCCCCEEECcCCC-CCCCCCccccCCCCCcEEE
Q 047332 327 SSLRALYLYNNGLCGFVPEEIRYLKSLSELELCKNHLSGVIPHSIGNLTGLLLLNMCENH-LSGPIPKSFKNLTSVERVL 405 (614)
Q Consensus 327 ~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~ls~n~-l~~~~~~~~~~~~~L~~L~ 405 (614)
++|+.|++++|.+.+..+..+..+++|++|++++|.+++..+..+..+++|++|++++|. +....+..+..+++|++|+
T Consensus 32 ~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~ 111 (285)
T 1ozn_A 32 AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLH 111 (285)
T ss_dssp TTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEE
T ss_pred CCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEE
Confidence 344444444444444444444444444555554444444444444444445555554443 3333344444444444444
Q ss_pred ccCCcCCcccccccCCCCCCCEEECcCcccccccCccccCCCCCcEEEcccCcccccCCccCCCCCCCCEEeCCCCcCcc
Q 047332 406 LNQNNLSGKVYEAFGDHPNLTFLNLSQNNFCGEISFNWRNFPKLGTFIVSVNNISGSIPPEIGDSPKLQVLDLSSNSIVG 485 (614)
Q Consensus 406 l~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 485 (614)
+++|.+.+..+..+..+++|++|++++|.+.+..+..+..+++|+.|++++|++++..+..+..+++|++|++++|.+.+
T Consensus 112 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ 191 (285)
T 1ozn_A 112 LDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAH 191 (285)
T ss_dssp CTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCE
T ss_pred CCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHHHhcCccccCEEECCCCcccc
Confidence 44444444444444444444444444444443333333334444444444443333222233334444444444444443
Q ss_pred ccchhccCCCCCCEeeccCCccccCccccccCCCCCCEEeCCCCcC
Q 047332 486 EIPVQLGKLFSLNKLILNLNQLSGGMPLELGSLTELQYLDLSANKL 531 (614)
Q Consensus 486 ~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~ls~n~l 531 (614)
..|..+..+++|++|++++|.+++..+..+..+++|+.|++++|.+
T Consensus 192 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~ 237 (285)
T 1ozn_A 192 VHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPW 237 (285)
T ss_dssp ECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCE
T ss_pred cCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCc
Confidence 3333344444444444444444433333334444444444444443
No 61
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.95 E-value=4.4e-26 Score=238.23 Aligned_cols=245 Identities=22% Similarity=0.195 Sum_probs=163.8
Q ss_pred EEEcCCCCCCcccCcccccCCCCCcEEECCCCCCCccCcccccCCCCCCEEeCCCCCCCCCCCcCCCCCCCCCEEEcccc
Q 047332 66 SINLSSMALNGTLQEFAFSSFPHLVQLNLSFNIFFGIIPPQIGNLSKLQYLDLGSNQLSGVIPPEIGHLNQLRILYFDVN 145 (614)
Q Consensus 66 ~l~l~~~~l~~~~~~~~~~~l~~L~~L~Ls~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~l~~n 145 (614)
.++.++.+++. +|. .+ .+++++|+|++|.+++..+..|.++++|++|+|++|.+++..+..|..+++|++|++++|
T Consensus 58 ~v~c~~~~l~~-iP~-~~--~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n 133 (452)
T 3zyi_A 58 KVVCTRRGLSE-VPQ-GI--PSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDN 133 (452)
T ss_dssp EEECCSSCCSS-CCS-CC--CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred EEEECCCCcCc-cCC-CC--CCCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCC
Confidence 34455544443 232 22 257888888888888877888888888888888888888777778888888888888888
Q ss_pred cCCCCCCccccCCCCCcEEEeccccCCCCCCcccCCCCCCcEEEeecCCCcccCC-ccccCCCCCCeeeccCccCCccCC
Q 047332 146 QLHGSIPPEIGQLSLINVLALCHNNLYGSIPSSLGNLSNLANFYFNNNSLFDSIP-LVLGNLNSLSTMDLSQNQFSGSIP 224 (614)
Q Consensus 146 ~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~-~~l~~l~~L~~L~l~~~~~~~~~~ 224 (614)
.++...+..+.++++|++|++++|.+++..+..+..+++|++|++++|...+.++ ..+..+++|++|++++|.+++ +|
T Consensus 134 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~-~~ 212 (452)
T 3zyi_A 134 WLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKD-MP 212 (452)
T ss_dssp CCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSS-CC
T ss_pred cCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCcccc-cc
Confidence 8876655667788888888888888876656667777888888887754434333 356667777777777777663 22
Q ss_pred ccccCCCCCCeEEcccCccccccchhccCCCCCCEEeccCCcCccccCccccCCCCCCEEecCCCcccccCCccCCCCCC
Q 047332 225 LSLGNLSNLGILYLYSNSFSGSIPSIIGNLKSLLQLDLSENQLIGSIPLSFGNLSRLTLMSLFNNLLSGSLPPILGNLKS 304 (614)
Q Consensus 225 ~~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~ 304 (614)
.+..+++|++|++++|.+++..|..+..+++|++|++++|.+.+..+..|..+++|+.|++++|.+++..+..+..+++
T Consensus 213 -~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~ 291 (452)
T 3zyi_A 213 -NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRY 291 (452)
T ss_dssp -CCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTT
T ss_pred -cccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccC
Confidence 3555666666666666666555555666666666666666665555555555666666666666655444444555555
Q ss_pred CCEeecCCCccc
Q 047332 305 LSALGLHINQLS 316 (614)
Q Consensus 305 L~~L~L~~n~l~ 316 (614)
|+.|++++|.+.
T Consensus 292 L~~L~L~~Np~~ 303 (452)
T 3zyi_A 292 LVELHLHHNPWN 303 (452)
T ss_dssp CCEEECCSSCEE
T ss_pred CCEEEccCCCcC
Confidence 555555555543
No 62
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.94 E-value=9.9e-26 Score=234.68 Aligned_cols=243 Identities=21% Similarity=0.190 Sum_probs=135.4
Q ss_pred EEEcCCCCCCcccCcccccCCCCCcEEECCCCCCCccCcccccCCCCCCEEeCCCCCCCCCCCcCCCCCCCCCEEEcccc
Q 047332 66 SINLSSMALNGTLQEFAFSSFPHLVQLNLSFNIFFGIIPPQIGNLSKLQYLDLGSNQLSGVIPPEIGHLNQLRILYFDVN 145 (614)
Q Consensus 66 ~l~l~~~~l~~~~~~~~~~~l~~L~~L~Ls~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~l~~n 145 (614)
.++..+..++. +|. .+ .+++++|+|++|.+.+..+..|.++++|++|+|++|.+++..+..|.++++|++|++++|
T Consensus 47 ~v~c~~~~l~~-iP~-~~--~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n 122 (440)
T 3zyj_A 47 KVICVRKNLRE-VPD-GI--STNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDN 122 (440)
T ss_dssp EEECCSCCCSS-CCS-CC--CTTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSS
T ss_pred EEEeCCCCcCc-CCC-CC--CCCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCC
Confidence 44555544442 232 22 256777777777777776677777777777777777777666667777777777777777
Q ss_pred cCCCCCCccccCCCCCcEEEeccccCCCCCCcccCCCCCCcEEEeecCCCcccCC-ccccCCCCCCeeeccCccCCccCC
Q 047332 146 QLHGSIPPEIGQLSLINVLALCHNNLYGSIPSSLGNLSNLANFYFNNNSLFDSIP-LVLGNLNSLSTMDLSQNQFSGSIP 224 (614)
Q Consensus 146 ~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~-~~l~~l~~L~~L~l~~~~~~~~~~ 224 (614)
.++...+..+.++++|++|++++|.+++..+..+..+++|++|++++|...+.++ ..|.++++|++|++++|.++ .+|
T Consensus 123 ~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~-~~~ 201 (440)
T 3zyj_A 123 RLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR-EIP 201 (440)
T ss_dssp CCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCS-SCC
T ss_pred cCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCc-ccc
Confidence 7775544566777777777777777765555556666666666666643333322 24555555555555555554 222
Q ss_pred ccccCCCCCCeEEcccCccccccchhccCCCCCCEEeccCCcCccccCccccCCCCCCEEecCCCcccccCCccCCCCCC
Q 047332 225 LSLGNLSNLGILYLYSNSFSGSIPSIIGNLKSLLQLDLSENQLIGSIPLSFGNLSRLTLMSLFNNLLSGSLPPILGNLKS 304 (614)
Q Consensus 225 ~~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~ 304 (614)
.+..+++|++|++++|.+++..|..+..+++|++|++++|.+.+..+..|..+++|++|+|++|.+++..+..+..+++
T Consensus 202 -~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~ 280 (440)
T 3zyj_A 202 -NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHH 280 (440)
T ss_dssp -CCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTT
T ss_pred -ccCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccC
Confidence 2344444444444444444444444444444444444444444444444444444444444444444333333333444
Q ss_pred CCEeecCCCc
Q 047332 305 LSALGLHINQ 314 (614)
Q Consensus 305 L~~L~L~~n~ 314 (614)
|+.|++++|.
T Consensus 281 L~~L~L~~Np 290 (440)
T 3zyj_A 281 LERIHLHHNP 290 (440)
T ss_dssp CCEEECCSSC
T ss_pred CCEEEcCCCC
Confidence 4444444443
No 63
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.94 E-value=4.9e-28 Score=240.47 Aligned_cols=266 Identities=20% Similarity=0.144 Sum_probs=183.6
Q ss_pred CCEeecCCCcccccCCccccCCCCCCEEEccCCcccccCcccccCCCCCcEEEcccccCCccCCccccCCCCCCEEECcC
Q 047332 305 LSALGLHINQLSGVIPSSIGNLSSLRALYLYNNGLCGFVPEEIRYLKSLSELELCKNHLSGVIPHSIGNLTGLLLLNMCE 384 (614)
Q Consensus 305 L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~ls~ 384 (614)
++..+++.+.+.......+..+++|++|++++|.+.+..|..+..+++|++|++++|.+++..+ +..+++|++|++++
T Consensus 12 l~i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~ 89 (317)
T 3o53_A 12 YKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNN 89 (317)
T ss_dssp EEEESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCS
T ss_pred eeEeeccccchhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECcC
Confidence 4445666666654444455566788888888888888777778888888888888888875543 77778888888888
Q ss_pred CCCCCCCCccccCCCCCcEEEccCCcCCcccccccCCCCCCCEEECcCcccccccCccccCCCCCcEEEcccCcccccCC
Q 047332 385 NHLSGPIPKSFKNLTSVERVLLNQNNLSGKVYEAFGDHPNLTFLNLSQNNFCGEISFNWRNFPKLGTFIVSVNNISGSIP 464 (614)
Q Consensus 385 n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~ 464 (614)
|.+++. ...++|++|++++|.+.+..+. .+++|++|++++|.+.+..+..+..+++|+.|++++|.+++..+
T Consensus 90 n~l~~l-----~~~~~L~~L~l~~n~l~~~~~~---~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~ 161 (317)
T 3o53_A 90 NYVQEL-----LVGPSIETLHAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNF 161 (317)
T ss_dssp SEEEEE-----EECTTCCEEECCSSCCSEEEEC---CCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEG
T ss_pred Cccccc-----cCCCCcCEEECCCCccCCcCcc---ccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccH
Confidence 877642 2347778888888877755443 35677778888777776666667777777777777777776655
Q ss_pred ccCC-CCCCCCEEeCCCCcCccccchhccCCCCCCEeeccCCccccCccccccCCCCCCEEeCCCCcCcccCCccccccC
Q 047332 465 PEIG-DSPKLQVLDLSSNSIVGEIPVQLGKLFSLNKLILNLNQLSGGMPLELGSLTELQYLDLSANKLKSSIPKSIGNLL 543 (614)
Q Consensus 465 ~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~l~~l~ 543 (614)
..+. .+++|++|++++|.+++. +. ...+++|++|++++|.+++ +|..+..+++|+.|++++|.+. .+|..+..++
T Consensus 162 ~~~~~~l~~L~~L~L~~N~l~~~-~~-~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~L~~N~l~-~l~~~~~~l~ 237 (317)
T 3o53_A 162 AELAASSDTLEHLNLQYNFIYDV-KG-QVVFAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQ 237 (317)
T ss_dssp GGGGGGTTTCCEEECTTSCCCEE-EC-CCCCTTCCEEECCSSCCCE-ECGGGGGGTTCSEEECTTSCCC-EECTTCCCCT
T ss_pred HHHhhccCcCCEEECCCCcCccc-cc-ccccccCCEEECCCCcCCc-chhhhcccCcccEEECcCCccc-chhhHhhcCC
Confidence 5543 567777777777777643 22 2346777777777777774 3334667777777777777777 4566677777
Q ss_pred CCCEEeCCCCcCC-cCCChhhhcCCCCCeeeCCCC-CCCCCCC
Q 047332 544 RLRYLDLSNNQFG-HKIPIELEKLIHLSELDLSYN-FLGEEIP 584 (614)
Q Consensus 544 ~L~~L~l~~n~~~-~~~p~~l~~l~~L~~L~L~~n-~~~~~~p 584 (614)
+|+.|++++|++. +.+|..+..++.|+.+++++| .+.+..|
T Consensus 238 ~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~~~~l~~~~~ 280 (317)
T 3o53_A 238 NLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNE 280 (317)
T ss_dssp TCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHHHHHHHHSSSS
T ss_pred CCCEEEccCCCccCcCHHHHHhccccceEEECCCchhccCCch
Confidence 7777777777776 556666777777777777744 3334333
No 64
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.94 E-value=9.2e-30 Score=276.51 Aligned_cols=413 Identities=14% Similarity=0.131 Sum_probs=180.7
Q ss_pred CEEEcccccCCCCCCccccCCCCCcEEEeccccCCC---CCCcc------------cCCCCCCcEEEeecCCCcccCCcc
Q 047332 138 RILYFDVNQLHGSIPPEIGQLSLINVLALCHNNLYG---SIPSS------------LGNLSNLANFYFNNNSLFDSIPLV 202 (614)
Q Consensus 138 ~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~l~~---~~~~~------------l~~l~~L~~L~l~~~~~~~~~~~~ 202 (614)
+.++++.+... .....+.++++|++|+++++.... ..|.. ...+++|++|++++|.+.+..+..
T Consensus 46 ~~l~~~~~~~~-~~~~~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~ 124 (594)
T 2p1m_B 46 RKVFIGNCYAV-SPATVIRRFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLEL 124 (594)
T ss_dssp CEEEESSTTSS-CHHHHHHHCTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHH
T ss_pred eEEeecccccc-CHHHHHhhCCCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcEEcHHHHHH
Confidence 35566554322 112345667888888888864221 11111 134556666666666655544434
Q ss_pred cc-CCCCCCeeeccCc-cCCcc-CCccccCCCCCCeEEcccCccccccchhc----cCCCCCCEEeccCCc--Ccc-ccC
Q 047332 203 LG-NLNSLSTMDLSQN-QFSGS-IPLSLGNLSNLGILYLYSNSFSGSIPSII----GNLKSLLQLDLSENQ--LIG-SIP 272 (614)
Q Consensus 203 l~-~l~~L~~L~l~~~-~~~~~-~~~~l~~l~~L~~L~L~~~~~~~~~~~~l----~~l~~L~~L~L~~n~--~~~-~~~ 272 (614)
+. .+++|++|++++| .++.. ++..+..+++|++|++++|.+++..+..+ ..+++|++|++++|. +.. .+.
T Consensus 125 l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~ 204 (594)
T 2p1m_B 125 IAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALE 204 (594)
T ss_dssp HHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHH
T ss_pred HHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHH
Confidence 43 4566666666666 33321 22233355666666666666544332222 244566666666654 111 011
Q ss_pred ccccCCCCCCEEecCCCcccccCCccCCCCCCCCEeecCCCc-------ccccCCccccCCCCCCEE-EccCCcccccCc
Q 047332 273 LSFGNLSRLTLMSLFNNLLSGSLPPILGNLKSLSALGLHINQ-------LSGVIPSSIGNLSSLRAL-YLYNNGLCGFVP 344 (614)
Q Consensus 273 ~~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~n~-------l~~~~~~~l~~~~~L~~L-~l~~n~~~~~~~ 344 (614)
..+..+++|++|++++|...+.++..+..+++|++|+++.+. +.+ ++..+.++++|+.+ .+.+... +.++
T Consensus 205 ~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~-l~~~l~~~~~L~~Ls~~~~~~~-~~l~ 282 (594)
T 2p1m_B 205 RLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSG-LSVALSGCKELRCLSGFWDAVP-AYLP 282 (594)
T ss_dssp HHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHHH-HHHHHHTCTTCCEEECCBTCCG-GGGG
T ss_pred HHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccccCccchhhHHH-HHHHHhcCCCcccccCCcccch-hhHH
Confidence 112334666666666652222244445555666666543332 221 22234555555555 2222211 1223
Q ss_pred ccccCCCCCcEEEcccccCCccCC-ccccCCCCCCEEECcCCCCCC-CCCccccCCCCCcEEEccC---------CcCCc
Q 047332 345 EEIRYLKSLSELELCKNHLSGVIP-HSIGNLTGLLLLNMCENHLSG-PIPKSFKNLTSVERVLLNQ---------NNLSG 413 (614)
Q Consensus 345 ~~~~~~~~L~~L~l~~n~~~~~~~-~~~~~l~~L~~L~ls~n~l~~-~~~~~~~~~~~L~~L~l~~---------n~~~~ 413 (614)
..+..+++|++|++++|.+++... ..+..+++|+.|++++| ++. .++.....+++|++|++.+ +.+++
T Consensus 283 ~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~ 361 (594)
T 2p1m_B 283 AVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTE 361 (594)
T ss_dssp GGHHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCH
T ss_pred HHHHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCH
Confidence 333344555555555555443211 11334455555555554 221 1111122345555555522 22322
Q ss_pred ccccccC-CCCCCCEEECcCcccccccCcccc-CCCCCcEEEcc--c----Cccccc-----CCccCCCCCCCCEEeCCC
Q 047332 414 KVYEAFG-DHPNLTFLNLSQNNFCGEISFNWR-NFPKLGTFIVS--V----NNISGS-----IPPEIGDSPKLQVLDLSS 480 (614)
Q Consensus 414 ~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~-~~~~L~~L~l~--~----~~~~~~-----~~~~~~~~~~L~~L~l~~ 480 (614)
.....+. .+++|++|.+..+.+++.....+. .+++|+.|+++ + +.++.. ++..+..+++|++|++++
T Consensus 362 ~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~ 441 (594)
T 2p1m_B 362 QGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG 441 (594)
T ss_dssp HHHHHHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS
T ss_pred HHHHHHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC
Confidence 2222221 245555555544444433222222 24555555555 2 222210 111123344555555544
Q ss_pred CcCccccchhccC-CCCCCEeeccCCccccCccccc-cCCCCCCEEeCCCCcCcccCCc-cccccCCCCEEeCCCCcC
Q 047332 481 NSIVGEIPVQLGK-LFSLNKLILNLNQLSGGMPLEL-GSLTELQYLDLSANKLKSSIPK-SIGNLLRLRYLDLSNNQF 555 (614)
Q Consensus 481 ~~~~~~~~~~~~~-~~~L~~L~l~~n~~~~~~~~~~-~~l~~L~~L~ls~n~l~~~~~~-~l~~l~~L~~L~l~~n~~ 555 (614)
.+++..+..+.. +++|++|++++|.+++..+..+ .++++|++|++++|.+++.... .+..+++|+.|++++|++
T Consensus 442 -~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~ 518 (594)
T 2p1m_B 442 -LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSV 518 (594)
T ss_dssp -SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCC
T ss_pred -cccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCC
Confidence 333322222222 4445555555555443322222 3345555555555554322221 222344555555555554
No 65
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.94 E-value=2.4e-29 Score=273.27 Aligned_cols=436 Identities=14% Similarity=0.123 Sum_probs=225.8
Q ss_pred cEEEeccccCCCCCCcccCCCCCCcEEEeecCCCcccC---Cc------------cccCCCCCCeeeccCccCCccCCcc
Q 047332 162 NVLALCHNNLYGSIPSSLGNLSNLANFYFNNNSLFDSI---PL------------VLGNLNSLSTMDLSQNQFSGSIPLS 226 (614)
Q Consensus 162 ~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~---~~------------~l~~l~~L~~L~l~~~~~~~~~~~~ 226 (614)
+.+++..+... .....+..+++|+.|+++++.....+ |. ....+++|+.|+++++.+++..+..
T Consensus 46 ~~l~~~~~~~~-~~~~~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~ 124 (594)
T 2p1m_B 46 RKVFIGNCYAV-SPATVIRRFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLEL 124 (594)
T ss_dssp CEEEESSTTSS-CHHHHHHHCTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHH
T ss_pred eEEeecccccc-CHHHHHhhCCCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcEEcHHHHHH
Confidence 35555554322 11233456788888988887533211 11 1235667777777777766555555
Q ss_pred cc-CCCCCCeEEcccC-ccccc-cchhccCCCCCCEEeccCCcCccccCccc----cCCCCCCEEecCCCc--ccc-cCC
Q 047332 227 LG-NLSNLGILYLYSN-SFSGS-IPSIIGNLKSLLQLDLSENQLIGSIPLSF----GNLSRLTLMSLFNNL--LSG-SLP 296 (614)
Q Consensus 227 l~-~l~~L~~L~L~~~-~~~~~-~~~~l~~l~~L~~L~L~~n~~~~~~~~~l----~~l~~L~~L~L~~~~--~~~-~~~ 296 (614)
+. .+++|++|++++| .++.. ++.....+++|++|++++|.+.+..+..+ ..+++|++|++++|. +.. .++
T Consensus 125 l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~ 204 (594)
T 2p1m_B 125 IAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALE 204 (594)
T ss_dssp HHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHH
T ss_pred HHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHH
Confidence 54 4677777777777 33322 33334467777777777776554333332 245677777777765 211 111
Q ss_pred ccCCCCCCCCEeecCCCcccccCCccccCCCCCCEEEccCCc-------ccccCcccccCCCCCcEE-EcccccCCccCC
Q 047332 297 PILGNLKSLSALGLHINQLSGVIPSSIGNLSSLRALYLYNNG-------LCGFVPEEIRYLKSLSEL-ELCKNHLSGVIP 368 (614)
Q Consensus 297 ~~l~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~-------~~~~~~~~~~~~~~L~~L-~l~~n~~~~~~~ 368 (614)
..+..+++|++|++++|...+.++..+..+++|+.|++..+. +.+ ++..+..+++|+.+ .+.+... +.++
T Consensus 205 ~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~-l~~~l~~~~~L~~Ls~~~~~~~-~~l~ 282 (594)
T 2p1m_B 205 RLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSG-LSVALSGCKELRCLSGFWDAVP-AYLP 282 (594)
T ss_dssp HHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHHH-HHHHHHTCTTCCEEECCBTCCG-GGGG
T ss_pred HHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccccCccchhhHHH-HHHHHhcCCCcccccCCcccch-hhHH
Confidence 112345677777777662222355555666777777754432 222 22345666666666 2322211 1233
Q ss_pred ccccCCCCCCEEECcCCCCCCCC-CccccCCCCCcEEEccCCcCCcccccc-cCCCCCCCEEECcC---------ccccc
Q 047332 369 HSIGNLTGLLLLNMCENHLSGPI-PKSFKNLTSVERVLLNQNNLSGKVYEA-FGDHPNLTFLNLSQ---------NNFCG 437 (614)
Q Consensus 369 ~~~~~l~~L~~L~ls~n~l~~~~-~~~~~~~~~L~~L~l~~n~~~~~~~~~-~~~~~~L~~L~l~~---------~~~~~ 437 (614)
..+..+++|+.|++++|.+++.. ...+..+++|++|++.+| +....... ...+++|++|++.+ +.+++
T Consensus 283 ~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~ 361 (594)
T 2p1m_B 283 AVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTE 361 (594)
T ss_dssp GGHHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCH
T ss_pred HHHHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCH
Confidence 33345566777777776654321 122446667777777666 33222221 22366677776633 23332
Q ss_pred ccCccc-cCCCCCcEEEcccCcccccCCccCC-CCCCCCEEeCC--C----CcCcc-----ccchhccCCCCCCEeeccC
Q 047332 438 EISFNW-RNFPKLGTFIVSVNNISGSIPPEIG-DSPKLQVLDLS--S----NSIVG-----EIPVQLGKLFSLNKLILNL 504 (614)
Q Consensus 438 ~~~~~~-~~~~~L~~L~l~~~~~~~~~~~~~~-~~~~L~~L~l~--~----~~~~~-----~~~~~~~~~~~L~~L~l~~ 504 (614)
.....+ ..+++|+.|.+..+.+++.....+. .+++|+.|+++ + +.+++ .++..+..+++|++|++++
T Consensus 362 ~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~ 441 (594)
T 2p1m_B 362 QGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG 441 (594)
T ss_dssp HHHHHHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS
T ss_pred HHHHHHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC
Confidence 211112 2356666666666666544333332 35666666666 2 23321 1122244556666666655
Q ss_pred CccccCccccccC-CCCCCEEeCCCCcCcccCCccc-cccCCCCEEeCCCCcCCcCCCh-hhhcCCCCCeeeCCCCCCCC
Q 047332 505 NQLSGGMPLELGS-LTELQYLDLSANKLKSSIPKSI-GNLLRLRYLDLSNNQFGHKIPI-ELEKLIHLSELDLSYNFLGE 581 (614)
Q Consensus 505 n~~~~~~~~~~~~-l~~L~~L~ls~n~l~~~~~~~l-~~l~~L~~L~l~~n~~~~~~p~-~l~~l~~L~~L~L~~n~~~~ 581 (614)
.+++..+..+.. +++|+.|++++|.+++..+..+ ..+++|++|++++|++++..+. ....+++|++|++++|+++.
T Consensus 442 -~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~~ 520 (594)
T 2p1m_B 442 -LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSVSF 520 (594)
T ss_dssp -SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCCBH
T ss_pred -cccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCCCH
Confidence 444333333332 5666666666666654433333 4566666666666666443332 22345666666666666633
Q ss_pred CCCccc-cCCCCCCeEECcCCC
Q 047332 582 EIPFQI-CNVKSLEKLNLCHNN 602 (614)
Q Consensus 582 ~~p~~l-~~l~sL~~L~l~~n~ 602 (614)
.....+ ..++.|+...+..+.
T Consensus 521 ~~~~~l~~~lp~l~i~~~~~~~ 542 (594)
T 2p1m_B 521 GACKLLGQKMPKLNVEVIDERG 542 (594)
T ss_dssp HHHHHHHHHCTTEEEEEECSSS
T ss_pred HHHHHHHHhCCCCEEEEecCCC
Confidence 222222 234555555555443
No 66
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.94 E-value=2.1e-25 Score=216.06 Aligned_cols=216 Identities=24% Similarity=0.250 Sum_probs=144.7
Q ss_pred CCCccccceeeCCCCCEEEEEcCCCCCCcccCcccccCCCCCcEEECCCCCCCccCcccccCCCCCCEEeCCCCCCCCCC
Q 047332 48 ISPCAWLGISCNQAGRVISINLSSMALNGTLQEFAFSSFPHLVQLNLSFNIFFGIIPPQIGNLSKLQYLDLGSNQLSGVI 127 (614)
Q Consensus 48 ~~~c~w~~~~c~~~~~v~~l~l~~~~l~~~~~~~~~~~l~~L~~L~Ls~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~ 127 (614)
.++|.|.|+.|...+.++.++++++.++. +|. .+. +++++|++++|.+++..+..|.++++|++|++++|.++...
T Consensus 2 ~~~C~~~~~~C~c~~~~~~l~~~~~~l~~-ip~-~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~ 77 (270)
T 2o6q_A 2 EALCKKDGGVCSCNNNKNSVDCSSKKLTA-IPS-NIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLP 77 (270)
T ss_dssp CCCBGGGTCSBEEETTTTEEECTTSCCSS-CCS-CCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCC
T ss_pred CccCCCCCCCCEeCCCCCEEEccCCCCCc-cCC-CCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeC
Confidence 36899999999876677788888888874 343 222 57888888888888776677888888888888888887555
Q ss_pred CcCCCCCCCCCEEEcccccCCCCCCccccCCCCCcEEEeccccCCCCCCcccCCCCCCcEEEeecCCCcccCCccccCCC
Q 047332 128 PPEIGHLNQLRILYFDVNQLHGSIPPEIGQLSLINVLALCHNNLYGSIPSSLGNLSNLANFYFNNNSLFDSIPLVLGNLN 207 (614)
Q Consensus 128 ~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~ 207 (614)
+..|..+++|++|++++|.+.+..+..+.++++|++|++++|.+++..+..+..+++|++|++++|.+.+..+..+..++
T Consensus 78 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~ 157 (270)
T 2o6q_A 78 AGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLT 157 (270)
T ss_dssp TTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCT
T ss_pred hhhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCc
Confidence 55567788888888888887755555667777777777777777766666666666777777766666555444455666
Q ss_pred CCCeeeccCccCCccCCccccCCCCCCeEEcccCccccccchhccCCCCCCEEeccCCcC
Q 047332 208 SLSTMDLSQNQFSGSIPLSLGNLSNLGILYLYSNSFSGSIPSIIGNLKSLLQLDLSENQL 267 (614)
Q Consensus 208 ~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~n~~ 267 (614)
+|+.|++++|.+++..+..|..+++|++|++++|.+++..+..+..+++|+.|++++|.+
T Consensus 158 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~ 217 (270)
T 2o6q_A 158 SLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPW 217 (270)
T ss_dssp TCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCB
T ss_pred ccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCe
Confidence 666666666665544444455555555555555555433333344444555555544443
No 67
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.94 E-value=3.9e-28 Score=240.58 Aligned_cols=249 Identities=21% Similarity=0.199 Sum_probs=114.8
Q ss_pred CCCCCcEEECCCCCCCccCcccccCCCCCCEEeCCCCCCC-CCCCcCCC-------CCCCCCEEEcccccCCCCCCccc-
Q 047332 85 SFPHLVQLNLSFNIFFGIIPPQIGNLSKLQYLDLGSNQLS-GVIPPEIG-------HLNQLRILYFDVNQLHGSIPPEI- 155 (614)
Q Consensus 85 ~l~~L~~L~Ls~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~-~~~~~~l~-------~l~~L~~L~l~~n~~~~~~~~~~- 155 (614)
..++|++|++++|.+ .+|..+... |++|++++|.+. ..+|..+. ++++|++|++++|.+++.+|..+
T Consensus 41 ~~~~L~~l~l~~n~l--~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~ 116 (312)
T 1wwl_A 41 GGRSLEYLLKRVDTE--ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLL 116 (312)
T ss_dssp EEEECTTHHHHCCTT--CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSS
T ss_pred cCCCceeEeeccccc--ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHH
Confidence 344555555555555 344433322 555555555542 23333332 45555555555555555555443
Q ss_pred -cCCCCCcEEEeccccCCCCCCcccCCC-----CCCcEEEeecCCCcccCCccccCCCCCCeeeccCccCCcc--CCccc
Q 047332 156 -GQLSLINVLALCHNNLYGSIPSSLGNL-----SNLANFYFNNNSLFDSIPLVLGNLNSLSTMDLSQNQFSGS--IPLSL 227 (614)
Q Consensus 156 -~~l~~L~~L~l~~~~l~~~~~~~l~~l-----~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~--~~~~l 227 (614)
..+++|++|++++|.+++. |..+..+ ++|++|++++|.+.+..+..++.+++|++|++++|++.+. .+..+
T Consensus 117 ~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~ 195 (312)
T 1wwl_A 117 EATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISAL 195 (312)
T ss_dssp SCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHS
T ss_pred HhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHH
Confidence 4555555555555555544 4444333 4455555555554444444444444555555554444322 11122
Q ss_pred --cCCCCCCeEEcccCccccccchhccCCCCCCEEeccCCcCccccCccccCCCCCCEEecCCCcccccCC-ccCCCCCC
Q 047332 228 --GNLSNLGILYLYSNSFSGSIPSIIGNLKSLLQLDLSENQLIGSIPLSFGNLSRLTLMSLFNNLLSGSLP-PILGNLKS 304 (614)
Q Consensus 228 --~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~-~~l~~l~~ 304 (614)
..+++|++|++++|.+++. + ......+..+++|++|++++|.+++..| ..+..+++
T Consensus 196 ~~~~l~~L~~L~L~~N~l~~~-~--------------------~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~ 254 (312)
T 1wwl_A 196 CPLKFPTLQVLALRNAGMETP-S--------------------GVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQ 254 (312)
T ss_dssp CTTSCTTCCEEECTTSCCCCH-H--------------------HHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTT
T ss_pred HhccCCCCCEEECCCCcCcch-H--------------------HHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCC
Confidence 3444444444444444310 0 1111112334444444444444443332 22333455
Q ss_pred CCEeecCCCcccccCCccccCCCCCCEEEccCCcccccCcccccCCCCCcEEEcccccCC
Q 047332 305 LSALGLHINQLSGVIPSSIGNLSSLRALYLYNNGLCGFVPEEIRYLKSLSELELCKNHLS 364 (614)
Q Consensus 305 L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~ 364 (614)
|++|++++|.++ .+|..+. ++|+.|++++|++++. |. +..+++|++|++++|.++
T Consensus 255 L~~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~l~~~-p~-~~~l~~L~~L~L~~N~l~ 309 (312)
T 1wwl_A 255 LNSLNLSFTGLK-QVPKGLP--AKLSVLDLSYNRLDRN-PS-PDELPQVGNLSLKGNPFL 309 (312)
T ss_dssp CCEEECTTSCCS-SCCSSCC--SEEEEEECCSSCCCSC-CC-TTTSCEEEEEECTTCTTT
T ss_pred CCEEECCCCccC-hhhhhcc--CCceEEECCCCCCCCC-hh-HhhCCCCCEEeccCCCCC
Confidence 555555555554 3343333 4555555555555554 33 455555555666555554
No 68
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.94 E-value=9.7e-28 Score=237.75 Aligned_cols=253 Identities=24% Similarity=0.231 Sum_probs=156.0
Q ss_pred cCCCCCCEEEccCCcccccCcccccCCCCCcEEEcccccCC-ccCCcccc-------CCCCCCEEECcCCCCCCCCCccc
Q 047332 324 GNLSSLRALYLYNNGLCGFVPEEIRYLKSLSELELCKNHLS-GVIPHSIG-------NLTGLLLLNMCENHLSGPIPKSF 395 (614)
Q Consensus 324 ~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~-~~~~~~~~-------~l~~L~~L~ls~n~l~~~~~~~~ 395 (614)
...++|+.+++++|.+ .+|..+... |+.|++++|.++ ..++..+. .+++|++|++++|.+++.+|..+
T Consensus 40 ~~~~~L~~l~l~~n~l--~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~ 115 (312)
T 1wwl_A 40 GGGRSLEYLLKRVDTE--ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPL 115 (312)
T ss_dssp EEEEECTTHHHHCCTT--CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCS
T ss_pred ccCCCceeEeeccccc--ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHH
Confidence 4455677777777777 445444332 666777776663 22333332 45555555555555555444443
Q ss_pred --cCCCCCcEEEccCCcCCcccccccCCCCCCCEEECcCcccccccCccccCCCCCcEEEcccCcccccCCccCCCCCCC
Q 047332 396 --KNLTSVERVLLNQNNLSGKVYEAFGDHPNLTFLNLSQNNFCGEISFNWRNFPKLGTFIVSVNNISGSIPPEIGDSPKL 473 (614)
Q Consensus 396 --~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L 473 (614)
..+++|++|++++|.+++. +..+..++ ...+++|++|++++|++++..+..+..+++|
T Consensus 116 ~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~-------------------~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L 175 (312)
T 1wwl_A 116 LEATGPDLNILNLRNVSWATR-DAWLAELQ-------------------QWLKPGLKVLSIAQAHSLNFSCEQVRVFPAL 175 (312)
T ss_dssp SSCCSCCCSEEEEESCBCSSS-SSHHHHHH-------------------TTCCTTCCEEEEESCSCCCCCTTTCCCCSSC
T ss_pred HHhcCCCccEEEccCCCCcch-hHHHHHHH-------------------HhhcCCCcEEEeeCCCCccchHHHhccCCCC
Confidence 4455555555555544433 32222220 0001566666666666665555666667777
Q ss_pred CEEeCCCCcCccc--cchhc--cCCCCCCEeeccCCccccC---ccccccCCCCCCEEeCCCCcCcccCC-ccccccCCC
Q 047332 474 QVLDLSSNSIVGE--IPVQL--GKLFSLNKLILNLNQLSGG---MPLELGSLTELQYLDLSANKLKSSIP-KSIGNLLRL 545 (614)
Q Consensus 474 ~~L~l~~~~~~~~--~~~~~--~~~~~L~~L~l~~n~~~~~---~~~~~~~l~~L~~L~ls~n~l~~~~~-~~l~~l~~L 545 (614)
++|++++|++.+. .+..+ ..+++|++|++++|.+++. ....+..+++|++|++++|.+.+..| ..+..+++|
T Consensus 176 ~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L 255 (312)
T 1wwl_A 176 STLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQL 255 (312)
T ss_dssp CEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTC
T ss_pred CEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCC
Confidence 7777777776543 22333 6677777777777777631 22334567788888888888876664 455667888
Q ss_pred CEEeCCCCcCCcCCChhhhcCCCCCeeeCCCCCCCCCCCccccCCCCCCeEECcCCCCcc
Q 047332 546 RYLDLSNNQFGHKIPIELEKLIHLSELDLSYNFLGEEIPFQICNVKSLEKLNLCHNNLLG 605 (614)
Q Consensus 546 ~~L~l~~n~~~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~sL~~L~l~~n~l~~ 605 (614)
++|++++|+++ .+|..+. ++|++|++++|++.+. |. +..+++|++|++++|++++
T Consensus 256 ~~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~l~~~-p~-~~~l~~L~~L~L~~N~l~~ 310 (312)
T 1wwl_A 256 NSLNLSFTGLK-QVPKGLP--AKLSVLDLSYNRLDRN-PS-PDELPQVGNLSLKGNPFLD 310 (312)
T ss_dssp CEEECTTSCCS-SCCSSCC--SEEEEEECCSSCCCSC-CC-TTTSCEEEEEECTTCTTTC
T ss_pred CEEECCCCccC-hhhhhcc--CCceEEECCCCCCCCC-hh-HhhCCCCCEEeccCCCCCC
Confidence 88888888886 6666655 7888888888888776 55 7788888888888888875
No 69
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.93 E-value=2.2e-27 Score=235.71 Aligned_cols=253 Identities=21% Similarity=0.190 Sum_probs=112.9
Q ss_pred EccCCcccccCcccccCCCCCcEEEcccccCCccCCccccCCCCCCEEECcCCCCCCCCCccccCCCCCcEEEccCCcCC
Q 047332 333 YLYNNGLCGFVPEEIRYLKSLSELELCKNHLSGVIPHSIGNLTGLLLLNMCENHLSGPIPKSFKNLTSVERVLLNQNNLS 412 (614)
Q Consensus 333 ~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~l~~n~~~ 412 (614)
+++.+.+.......+..+++|++|++++|.+++..|..+..+++|++|++++|.+++..+ +..+++|++|++++|.++
T Consensus 16 ~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~l~ 93 (317)
T 3o53_A 16 KVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQ 93 (317)
T ss_dssp SCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCSSEEE
T ss_pred eccccchhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECcCCccc
Confidence 333333333333333334445555555555444444444444555555555554443222 444455555555554443
Q ss_pred cccccccCCCCCCCEEECcCcccccccCccccCCCCCcEEEcccCcccccCCccCCCCCCCCEEeCCCCcCccccchhc-
Q 047332 413 GKVYEAFGDHPNLTFLNLSQNNFCGEISFNWRNFPKLGTFIVSVNNISGSIPPEIGDSPKLQVLDLSSNSIVGEIPVQL- 491 (614)
Q Consensus 413 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~- 491 (614)
+.. ..++|++|++++|.+.+..+. .+++|+.|++++|++++..+..+..+++|++|++++|.+.+..+..+
T Consensus 94 ~l~-----~~~~L~~L~l~~n~l~~~~~~---~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~ 165 (317)
T 3o53_A 94 ELL-----VGPSIETLHAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELA 165 (317)
T ss_dssp EEE-----ECTTCCEEECCSSCCSEEEEC---CCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGG
T ss_pred ccc-----CCCCcCEEECCCCccCCcCcc---ccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHh
Confidence 222 124455555555544433221 23445555555555444434344444455555555555444333333
Q ss_pred cCCCCCCEeeccCCccccCccccccCCCCCCEEeCCCCcCcccCCccccccCCCCEEeCCCCcCCcCCChhhhcCCCCCe
Q 047332 492 GKLFSLNKLILNLNQLSGGMPLELGSLTELQYLDLSANKLKSSIPKSIGNLLRLRYLDLSNNQFGHKIPIELEKLIHLSE 571 (614)
Q Consensus 492 ~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~ 571 (614)
..+++|++|++++|.+++. + ....+++|++|++++|.+.+ +|..+..+++|+.|++++|+++ .+|..+..+++|+.
T Consensus 166 ~~l~~L~~L~L~~N~l~~~-~-~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~L~~N~l~-~l~~~~~~l~~L~~ 241 (317)
T 3o53_A 166 ASSDTLEHLNLQYNFIYDV-K-GQVVFAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEH 241 (317)
T ss_dssp GGTTTCCEEECTTSCCCEE-E-CCCCCTTCCEEECCSSCCCE-ECGGGGGGTTCSEEECTTSCCC-EECTTCCCCTTCCE
T ss_pred hccCcCCEEECCCCcCccc-c-cccccccCCEEECCCCcCCc-chhhhcccCcccEEECcCCccc-chhhHhhcCCCCCE
Confidence 2344455555555544422 1 11224445555555555442 2223444455555555555543 23444444445555
Q ss_pred eeCCCCCCC-CCCCccccCCCCCCeEECc
Q 047332 572 LDLSYNFLG-EEIPFQICNVKSLEKLNLC 599 (614)
Q Consensus 572 L~L~~n~~~-~~~p~~l~~l~sL~~L~l~ 599 (614)
|++++|++. +.+|..+..++.|+.++++
T Consensus 242 L~l~~N~~~~~~~~~~~~~~~~L~~l~l~ 270 (317)
T 3o53_A 242 FDLRGNGFHCGTLRDFFSKNQRVQTVAKQ 270 (317)
T ss_dssp EECTTCCCBHHHHHHHHHTCHHHHHHHHH
T ss_pred EEccCCCccCcCHHHHHhccccceEEECC
Confidence 555555544 3344444444444444444
No 70
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.93 E-value=5.7e-24 Score=227.70 Aligned_cols=268 Identities=24% Similarity=0.293 Sum_probs=206.2
Q ss_pred CCCCEEecCCCcccccCCccCCCCCCCCEeecCCCcccccCCccccCCCCCCEEEccCCcccccCcccccCCCCCcEEEc
Q 047332 279 SRLTLMSLFNNLLSGSLPPILGNLKSLSALGLHINQLSGVIPSSIGNLSSLRALYLYNNGLCGFVPEEIRYLKSLSELEL 358 (614)
Q Consensus 279 ~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l 358 (614)
.+++.|++++|.++ .+|..+. ++|++|++++|.++ .+|. .+++|+.|++++|++++ +|. .+++|++|++
T Consensus 40 ~~l~~L~ls~n~L~-~lp~~l~--~~L~~L~L~~N~l~-~lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~L 108 (622)
T 3g06_A 40 NGNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLT-SLPA---LPPELRTLEVSGNQLTS-LPV---LPPGLLELSI 108 (622)
T ss_dssp HCCCEEECCSSCCS-CCCSCCC--TTCSEEEECSCCCS-CCCC---CCTTCCEEEECSCCCSC-CCC---CCTTCCEEEE
T ss_pred CCCcEEEecCCCcC-ccChhhC--CCCcEEEecCCCCC-CCCC---cCCCCCEEEcCCCcCCc-CCC---CCCCCCEEEC
Confidence 36899999999998 6676555 79999999999998 4554 56899999999999886 443 6689999999
Q ss_pred ccccCCccCCccccCCCCCCEEECcCCCCCCCCCccccCCCCCcEEEccCCcCCcccccccCCCCCCCEEECcCcccccc
Q 047332 359 CKNHLSGVIPHSIGNLTGLLLLNMCENHLSGPIPKSFKNLTSVERVLLNQNNLSGKVYEAFGDHPNLTFLNLSQNNFCGE 438 (614)
Q Consensus 359 ~~n~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 438 (614)
++|.+++. |. .+++|+.|++++|.++. +|.. +++|+.|++++|.+++.. . .+++|+.|++++|.+.+
T Consensus 109 s~N~l~~l-~~---~l~~L~~L~L~~N~l~~-lp~~---l~~L~~L~Ls~N~l~~l~-~---~~~~L~~L~L~~N~l~~- 175 (622)
T 3g06_A 109 FSNPLTHL-PA---LPSGLCKLWIFGNQLTS-LPVL---PPGLQELSVSDNQLASLP-A---LPSELCKLWAYNNQLTS- 175 (622)
T ss_dssp CSCCCCCC-CC---CCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSCCC-C---CCTTCCEEECCSSCCSC-
T ss_pred cCCcCCCC-CC---CCCCcCEEECCCCCCCc-CCCC---CCCCCEEECcCCcCCCcC-C---ccCCCCEEECCCCCCCC-
Confidence 99998854 43 56789999999998886 3432 488899999999887532 2 35788899999988875
Q ss_pred cCccccCCCCCcEEEcccCcccccCCccCCCCCCCCEEeCCCCcCccccchhccCCCCCCEeeccCCccccCccccccCC
Q 047332 439 ISFNWRNFPKLGTFIVSVNNISGSIPPEIGDSPKLQVLDLSSNSIVGEIPVQLGKLFSLNKLILNLNQLSGGMPLELGSL 518 (614)
Q Consensus 439 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l 518 (614)
++ ..+++|+.|++++|.+++ +|.. +++|+.|++++|.+. .+|. .+++|+.|++++|.+++ +| ..+
T Consensus 176 l~---~~~~~L~~L~Ls~N~l~~-l~~~---~~~L~~L~L~~N~l~-~l~~---~~~~L~~L~Ls~N~L~~-lp---~~l 240 (622)
T 3g06_A 176 LP---MLPSGLQELSVSDNQLAS-LPTL---PSELYKLWAYNNRLT-SLPA---LPSGLKELIVSGNRLTS-LP---VLP 240 (622)
T ss_dssp CC---CCCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCS-SCCC---CCTTCCEEECCSSCCSC-CC---CCC
T ss_pred Cc---ccCCCCcEEECCCCCCCC-CCCc---cchhhEEECcCCccc-ccCC---CCCCCCEEEccCCccCc-CC---CCC
Confidence 33 457888888998888874 4432 477888888888887 4443 24778888888888885 44 455
Q ss_pred CCCCEEeCCCCcCcccCCccccccCCCCEEeCCCCcCCcCCChhhhcCCCCCeeeCCCCCCCCCCCccccCC
Q 047332 519 TELQYLDLSANKLKSSIPKSIGNLLRLRYLDLSNNQFGHKIPIELEKLIHLSELDLSYNFLGEEIPFQICNV 590 (614)
Q Consensus 519 ~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l 590 (614)
++|+.|++++|.++ .+|. .+++|+.|++++|+++ .+|..+.++++|+.|+|++|++.+.+|..+..+
T Consensus 241 ~~L~~L~Ls~N~L~-~lp~---~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~~N~l~~~~~~~l~~L 307 (622)
T 3g06_A 241 SELKELMVSGNRLT-SLPM---LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQALREI 307 (622)
T ss_dssp TTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEECCSCCCCHHHHHHHHHH
T ss_pred CcCcEEECCCCCCC-cCCc---ccccCcEEeCCCCCCC-cCCHHHhhccccCEEEecCCCCCCcCHHHHHhc
Confidence 78888888888887 4554 5678888888888886 667788888888888888888888777655443
No 71
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.93 E-value=7.3e-24 Score=226.87 Aligned_cols=268 Identities=23% Similarity=0.310 Sum_probs=172.9
Q ss_pred CCCEEeccCCcCccccCccccCCCCCCEEecCCCcccccCCccCCCCCCCCEeecCCCcccccCCccccCCCCCCEEEcc
Q 047332 256 SLLQLDLSENQLIGSIPLSFGNLSRLTLMSLFNNLLSGSLPPILGNLKSLSALGLHINQLSGVIPSSIGNLSSLRALYLY 335 (614)
Q Consensus 256 ~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~ 335 (614)
.++.|++++|.+. .+|..+. ++|++|++++|.++ .+|. .+++|++|++++|++++ +|. .+++|+.|+++
T Consensus 41 ~l~~L~ls~n~L~-~lp~~l~--~~L~~L~L~~N~l~-~lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls 109 (622)
T 3g06_A 41 GNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLT-SLPA---LPPELRTLEVSGNQLTS-LPV---LPPGLLELSIF 109 (622)
T ss_dssp CCCEEECCSSCCS-CCCSCCC--TTCSEEEECSCCCS-CCCC---CCTTCCEEEECSCCCSC-CCC---CCTTCCEEEEC
T ss_pred CCcEEEecCCCcC-ccChhhC--CCCcEEEecCCCCC-CCCC---cCCCCCEEEcCCCcCCc-CCC---CCCCCCEEECc
Confidence 3555555555554 3343333 45555555555555 2333 34555666666655552 332 44566666666
Q ss_pred CCcccccCcccccCCCCCcEEEcccccCCccCCccccCCCCCCEEECcCCCCCCCCCccccCCCCCcEEEccCCcCCccc
Q 047332 336 NNGLCGFVPEEIRYLKSLSELELCKNHLSGVIPHSIGNLTGLLLLNMCENHLSGPIPKSFKNLTSVERVLLNQNNLSGKV 415 (614)
Q Consensus 336 ~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~ 415 (614)
+|.+.+. |. .+++|+.|++++|.+++ +|.. +++|++|++++|.+++. +. .+++|+.|++++|.++...
T Consensus 110 ~N~l~~l-~~---~l~~L~~L~L~~N~l~~-lp~~---l~~L~~L~Ls~N~l~~l-~~---~~~~L~~L~L~~N~l~~l~ 177 (622)
T 3g06_A 110 SNPLTHL-PA---LPSGLCKLWIFGNQLTS-LPVL---PPGLQELSVSDNQLASL-PA---LPSELCKLWAYNNQLTSLP 177 (622)
T ss_dssp SCCCCCC-CC---CCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSCC-CC---CCTTCCEEECCSSCCSCCC
T ss_pred CCcCCCC-CC---CCCCcCEEECCCCCCCc-CCCC---CCCCCEEECcCCcCCCc-CC---ccCCCCEEECCCCCCCCCc
Confidence 6665553 22 34566666666666653 3332 35666667766666542 22 2356677777777766432
Q ss_pred ccccCCCCCCCEEECcCcccccccCccccCCCCCcEEEcccCcccccCCccCCCCCCCCEEeCCCCcCccccchhccCCC
Q 047332 416 YEAFGDHPNLTFLNLSQNNFCGEISFNWRNFPKLGTFIVSVNNISGSIPPEIGDSPKLQVLDLSSNSIVGEIPVQLGKLF 495 (614)
Q Consensus 416 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~ 495 (614)
..+++|+.|++++|.+.+. +. .+++|+.|++++|.++ .+|. .+++|+.|++++|.+++ +| ..++
T Consensus 178 ----~~~~~L~~L~Ls~N~l~~l-~~---~~~~L~~L~L~~N~l~-~l~~---~~~~L~~L~Ls~N~L~~-lp---~~l~ 241 (622)
T 3g06_A 178 ----MLPSGLQELSVSDNQLASL-PT---LPSELYKLWAYNNRLT-SLPA---LPSGLKELIVSGNRLTS-LP---VLPS 241 (622)
T ss_dssp ----CCCTTCCEEECCSSCCSCC-CC---CCTTCCEEECCSSCCS-SCCC---CCTTCCEEECCSSCCSC-CC---CCCT
T ss_pred ----ccCCCCcEEECCCCCCCCC-CC---ccchhhEEECcCCccc-ccCC---CCCCCCEEEccCCccCc-CC---CCCC
Confidence 3457777777777777642 22 2467888888888776 3443 24778899999988874 55 4567
Q ss_pred CCCEeeccCCccccCccccccCCCCCCEEeCCCCcCcccCCccccccCCCCEEeCCCCcCCcCCChhhhcCC
Q 047332 496 SLNKLILNLNQLSGGMPLELGSLTELQYLDLSANKLKSSIPKSIGNLLRLRYLDLSNNQFGHKIPIELEKLI 567 (614)
Q Consensus 496 ~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~l~~l~ 567 (614)
+|+.|++++|.++ .+|. .+++|+.|++++|.++ .+|..+..+++|+.|++++|++++..|..+..++
T Consensus 242 ~L~~L~Ls~N~L~-~lp~---~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~~N~l~~~~~~~l~~L~ 308 (622)
T 3g06_A 242 ELKELMVSGNRLT-SLPM---LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQALREIT 308 (622)
T ss_dssp TCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEECCSCCCCHHHHHHHHHHH
T ss_pred cCcEEECCCCCCC-cCCc---ccccCcEEeCCCCCCC-cCCHHHhhccccCEEEecCCCCCCcCHHHHHhcc
Confidence 8999999999888 4554 5688999999999998 7788899999999999999999888887776554
No 72
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.93 E-value=3.7e-26 Score=239.98 Aligned_cols=237 Identities=21% Similarity=0.182 Sum_probs=139.2
Q ss_pred CCCCCCEEEccCCcccccCcccccCCCCCcEEEcccccCCccCCccccCCCCCCEEECcCCCCCCCCCccccCCCCCcEE
Q 047332 325 NLSSLRALYLYNNGLCGFVPEEIRYLKSLSELELCKNHLSGVIPHSIGNLTGLLLLNMCENHLSGPIPKSFKNLTSVERV 404 (614)
Q Consensus 325 ~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L 404 (614)
.+++|+.|++++|.+.+..|..+..+++|++|++++|.+++..| +..+++|++|++++|.+++.. ..++|+.|
T Consensus 32 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~-----~~~~L~~L 104 (487)
T 3oja_A 32 SAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELL-----VGPSIETL 104 (487)
T ss_dssp TGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEE-----ECTTCCEE
T ss_pred cCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCC-----CCCCcCEE
Confidence 34467777777777777666677777777777777777765544 666677777777777665322 22566666
Q ss_pred EccCCcCCcccccccCCCCCCCEEECcCcccccccCccccCCCCCcEEEcccCcccccCCccCC-CCCCCCEEeCCCCcC
Q 047332 405 LLNQNNLSGKVYEAFGDHPNLTFLNLSQNNFCGEISFNWRNFPKLGTFIVSVNNISGSIPPEIG-DSPKLQVLDLSSNSI 483 (614)
Q Consensus 405 ~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~-~~~~L~~L~l~~~~~ 483 (614)
++++|.+.+..+. .+++|+.|++++|.+.+..+..+..+++|+.|++++|.+++..|..+. .+++|+.|++++|.+
T Consensus 105 ~L~~N~l~~~~~~---~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l 181 (487)
T 3oja_A 105 HAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFI 181 (487)
T ss_dssp ECCSSCCCCEEEC---CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCC
T ss_pred ECcCCcCCCCCcc---ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCcc
Confidence 6666666654433 245666666666666655555555566666666666666655555443 455666666666665
Q ss_pred ccccchhccCCCCCCEeeccCCccccCccccccCCCCCCEEeCCCCcCcccCCccccccCCCCEEeCCCCcCC-cCCChh
Q 047332 484 VGEIPVQLGKLFSLNKLILNLNQLSGGMPLELGSLTELQYLDLSANKLKSSIPKSIGNLLRLRYLDLSNNQFG-HKIPIE 562 (614)
Q Consensus 484 ~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~l~~n~~~-~~~p~~ 562 (614)
++. +. ...+++|+.|++++|.+++..| .+..+++|+.|++++|.+.+ +|..+..+++|+.|++++|++. +.+|..
T Consensus 182 ~~~-~~-~~~l~~L~~L~Ls~N~l~~~~~-~~~~l~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~l~~N~l~c~~~~~~ 257 (487)
T 3oja_A 182 YDV-KG-QVVFAKLKTLDLSSNKLAFMGP-EFQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHCGTLRDF 257 (487)
T ss_dssp CEE-EC-CCCCTTCCEEECCSSCCCEECG-GGGGGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCBCHHHHHHH
T ss_pred ccc-cc-cccCCCCCEEECCCCCCCCCCH-hHcCCCCccEEEecCCcCcc-cchhhccCCCCCEEEcCCCCCcCcchHHH
Confidence 533 21 2235556666666666554322 35555566666666665553 4445555556666666666554 344455
Q ss_pred hhcCCCCCeeeCC
Q 047332 563 LEKLIHLSELDLS 575 (614)
Q Consensus 563 l~~l~~L~~L~L~ 575 (614)
+..++.|+.++++
T Consensus 258 ~~~l~~L~~l~~~ 270 (487)
T 3oja_A 258 FSKNQRVQTVAKQ 270 (487)
T ss_dssp HTTCHHHHHHHHH
T ss_pred HHhCCCCcEEecc
Confidence 5555555555554
No 73
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.92 E-value=5e-24 Score=207.32 Aligned_cols=208 Identities=26% Similarity=0.239 Sum_probs=115.2
Q ss_pred CCcEEEccCCcCCcccccccCCCCCCCEEECcCcccccccCccccCCCCCcEEEcccCcccccCCccCCCCCCCCEEeCC
Q 047332 400 SVERVLLNQNNLSGKVYEAFGDHPNLTFLNLSQNNFCGEISFNWRNFPKLGTFIVSVNNISGSIPPEIGDSPKLQVLDLS 479 (614)
Q Consensus 400 ~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~ 479 (614)
++++|++++|.+++..+..+..+++|++|++++|.+.+..+..+..+++|+.|++++|.+++..+..+..+++|++|+++
T Consensus 29 ~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~ 108 (276)
T 2z62_A 29 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAV 108 (276)
T ss_dssp TCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECT
T ss_pred CccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEECC
Confidence 34444444444444433344444555555555554444444444455555555555555554444455555555566665
Q ss_pred CCcCccccchhccCCCCCCEeeccCCccccC-ccccccCCCCCCEEeCCCCcCcccCCccccccCCCC----EEeCCCCc
Q 047332 480 SNSIVGEIPVQLGKLFSLNKLILNLNQLSGG-MPLELGSLTELQYLDLSANKLKSSIPKSIGNLLRLR----YLDLSNNQ 554 (614)
Q Consensus 480 ~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~-~~~~~~~l~~L~~L~ls~n~l~~~~~~~l~~l~~L~----~L~l~~n~ 554 (614)
+|.+.+..+..+..+++|++|++++|.+.+. +|..+..+++|++|++++|.+.+..+..+..+++|+ .|++++|+
T Consensus 109 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n~ 188 (276)
T 2z62_A 109 ETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNP 188 (276)
T ss_dssp TSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSSC
T ss_pred CCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCCc
Confidence 5555544444455566666666666666542 355666666666666666666655555555555555 66666666
Q ss_pred CCcCCChhhhcCCCCCeeeCCCCCCCCCCCccccCCCCCCeEECcCCCCcccCC
Q 047332 555 FGHKIPIELEKLIHLSELDLSYNFLGEEIPFQICNVKSLEKLNLCHNNLLGSFQ 608 (614)
Q Consensus 555 ~~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~sL~~L~l~~n~l~~~ip 608 (614)
+++..+..+.. .+|++|++++|++.+..+..|..+++|++|++++|++.+..|
T Consensus 189 l~~~~~~~~~~-~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~ 241 (276)
T 2z62_A 189 MNFIQPGAFKE-IRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 241 (276)
T ss_dssp CCEECTTSSCS-CCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCCCTT
T ss_pred ccccCccccCC-CcccEEECCCCceeecCHhHhcccccccEEEccCCcccccCC
Confidence 65544433332 356666666666665555555666666666666666666554
No 74
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.92 E-value=7e-25 Score=230.27 Aligned_cols=238 Identities=22% Similarity=0.203 Sum_probs=190.8
Q ss_pred cCCCCCcEEEcccccCCccCCccccCCCCCCEEECcCCCCCCCCCccccCCCCCcEEEccCCcCCcccccccCCCCCCCE
Q 047332 348 RYLKSLSELELCKNHLSGVIPHSIGNLTGLLLLNMCENHLSGPIPKSFKNLTSVERVLLNQNNLSGKVYEAFGDHPNLTF 427 (614)
Q Consensus 348 ~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~ 427 (614)
..+++|++|++++|.+++..|..|..+++|++|++++|.+++..+ +..+++|+.|++++|.+++..+ .++|++
T Consensus 31 ~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~~-----~~~L~~ 103 (487)
T 3oja_A 31 QSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLV-----GPSIET 103 (487)
T ss_dssp TTGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEEE-----CTTCCE
T ss_pred ccCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCCC-----CCCcCE
Confidence 344589999999999988777888889999999999998876554 8888899999999988875432 378899
Q ss_pred EECcCcccccccCccccCCCCCcEEEcccCcccccCCccCCCCCCCCEEeCCCCcCccccchhcc-CCCCCCEeeccCCc
Q 047332 428 LNLSQNNFCGEISFNWRNFPKLGTFIVSVNNISGSIPPEIGDSPKLQVLDLSSNSIVGEIPVQLG-KLFSLNKLILNLNQ 506 (614)
Q Consensus 428 L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~-~~~~L~~L~l~~n~ 506 (614)
|++++|.+.+..+. .+++|+.|++++|.+++..|..+..+++|+.|++++|.+.+..|..+. .+++|++|++++|.
T Consensus 104 L~L~~N~l~~~~~~---~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~ 180 (487)
T 3oja_A 104 LHAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNF 180 (487)
T ss_dssp EECCSSCCCCEEEC---CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSC
T ss_pred EECcCCcCCCCCcc---ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCc
Confidence 99999888765543 467888899999988887777788888889999999888877777765 68888999999888
Q ss_pred cccCccccccCCCCCCEEeCCCCcCcccCCccccccCCCCEEeCCCCcCCcCCChhhhcCCCCCeeeCCCCCCC-CCCCc
Q 047332 507 LSGGMPLELGSLTELQYLDLSANKLKSSIPKSIGNLLRLRYLDLSNNQFGHKIPIELEKLIHLSELDLSYNFLG-EEIPF 585 (614)
Q Consensus 507 ~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~L~~n~~~-~~~p~ 585 (614)
+++.. .+..+++|+.|++++|.+++. |..+..+++|+.|++++|.+++ +|..+..+++|+.|++++|++. +.+|.
T Consensus 181 l~~~~--~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~l~~N~l~c~~~~~ 256 (487)
T 3oja_A 181 IYDVK--GQVVFAKLKTLDLSSNKLAFM-GPEFQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHCGTLRD 256 (487)
T ss_dssp CCEEE--CCCCCTTCCEEECCSSCCCEE-CGGGGGGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCBCHHHHHH
T ss_pred ccccc--ccccCCCCCEEECCCCCCCCC-CHhHcCCCCccEEEecCCcCcc-cchhhccCCCCCEEEcCCCCCcCcchHH
Confidence 88552 234578888999998888864 4458888888999998888875 6677888888888999888887 56777
Q ss_pred cccCCCCCCeEECc
Q 047332 586 QICNVKSLEKLNLC 599 (614)
Q Consensus 586 ~l~~l~sL~~L~l~ 599 (614)
.+..++.|+.++++
T Consensus 257 ~~~~l~~L~~l~~~ 270 (487)
T 3oja_A 257 FFSKNQRVQTVAKQ 270 (487)
T ss_dssp HHTTCHHHHHHHHH
T ss_pred HHHhCCCCcEEecc
Confidence 77778888888776
No 75
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.91 E-value=9.6e-23 Score=197.35 Aligned_cols=203 Identities=24% Similarity=0.229 Sum_probs=133.4
Q ss_pred CCCEEECcCCCCCCCCCccccCCCCCcEEEccCCcCCcccccccCCCCCCCEEECcCcccccccCccccCCCCCcEEEcc
Q 047332 376 GLLLLNMCENHLSGPIPKSFKNLTSVERVLLNQNNLSGKVYEAFGDHPNLTFLNLSQNNFCGEISFNWRNFPKLGTFIVS 455 (614)
Q Consensus 376 ~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~ 455 (614)
..+.++++++.++. +|..+. +++++|++++|.+.+..+..+..+++|++|++++|.+....+..+..+++|++|+++
T Consensus 17 ~~~~l~~~~~~l~~-ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~ 93 (270)
T 2o6q_A 17 NKNSVDCSSKKLTA-IPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVT 93 (270)
T ss_dssp TTTEEECTTSCCSS-CCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECC
T ss_pred CCCEEEccCCCCCc-cCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECC
Confidence 46778888777774 444332 567777777777776666667777777777777777765555555667777777777
Q ss_pred cCcccccCCccCCCCCCCCEEeCCCCcCccccchhccCCCCCCEeeccCCccccCccccccCCCCCCEEeCCCCcCcccC
Q 047332 456 VNNISGSIPPEIGDSPKLQVLDLSSNSIVGEIPVQLGKLFSLNKLILNLNQLSGGMPLELGSLTELQYLDLSANKLKSSI 535 (614)
Q Consensus 456 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~ 535 (614)
+|.+++..+..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+.+..+..|..+++|+.|++++|.+.+..
T Consensus 94 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 173 (270)
T 2o6q_A 94 DNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVP 173 (270)
T ss_dssp SSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCC
T ss_pred CCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeC
Confidence 77766555555566666777777777666555555666666666666666666555555666666666666666666555
Q ss_pred CccccccCCCCEEeCCCCcCCcCCChhhhcCCCCCeeeCCCCCCCC
Q 047332 536 PKSIGNLLRLRYLDLSNNQFGHKIPIELEKLIHLSELDLSYNFLGE 581 (614)
Q Consensus 536 ~~~l~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~L~~n~~~~ 581 (614)
+..|..+++|++|++++|++++..+..+..+++|+.|++++|++..
T Consensus 174 ~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c 219 (270)
T 2o6q_A 174 EGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWDC 219 (270)
T ss_dssp TTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred hhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCeeC
Confidence 5556666666666666666665555556666666666666666543
No 76
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.91 E-value=3.4e-23 Score=201.45 Aligned_cols=207 Identities=22% Similarity=0.238 Sum_probs=106.6
Q ss_pred CCCcEEEcccccCCccCCccccCCCCCCEEECcCCCCCCCCCccccCCCCCcEEEccCCcCCcccccccCCCCCCCEEEC
Q 047332 351 KSLSELELCKNHLSGVIPHSIGNLTGLLLLNMCENHLSGPIPKSFKNLTSVERVLLNQNNLSGKVYEAFGDHPNLTFLNL 430 (614)
Q Consensus 351 ~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l 430 (614)
+++++|++++|.+++..+..+..+++|++|++++|.+++..+..|..+++|++|++++|.+.+..+..+..+++|++|++
T Consensus 28 ~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l 107 (276)
T 2z62_A 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA 107 (276)
T ss_dssp TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEEC
T ss_pred CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEEC
Confidence 35666666666666555555566666666666666665554455555566666666666555555555555555555555
Q ss_pred cCcccccccCccccCCCCCcEEEcccCcccccCCccCCCCCCCCEEeCCCCcCccccchhccCCCCCCEeeccCCccccC
Q 047332 431 SQNNFCGEISFNWRNFPKLGTFIVSVNNISGSIPPEIGDSPKLQVLDLSSNSIVGEIPVQLGKLFSLNKLILNLNQLSGG 510 (614)
Q Consensus 431 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~ 510 (614)
++|.+.+..+..+..+++|++|++++|.+++. .+|..+..+++|++|++++|.+++.
T Consensus 108 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~-----------------------~l~~~~~~l~~L~~L~Ls~N~l~~~ 164 (276)
T 2z62_A 108 VETNLASLENFPIGHLKTLKELNVAHNLIQSF-----------------------KLPEYFSNLTNLEHLDLSSNKIQSI 164 (276)
T ss_dssp TTSCCCCSTTCCCTTCTTCCEEECCSSCCCCC-----------------------CCCGGGGGCTTCCEEECCSSCCCEE
T ss_pred CCCCccccCchhcccCCCCCEEECcCCcccee-----------------------cCchhhccCCCCCEEECCCCCCCcC
Confidence 55555544443444455555555555544432 1244444444555555555544443
Q ss_pred ccccccCCCCCC----EEeCCCCcCcccCCccccccCCCCEEeCCCCcCCcCCChhhhcCCCCCeeeCCCCCCCC
Q 047332 511 MPLELGSLTELQ----YLDLSANKLKSSIPKSIGNLLRLRYLDLSNNQFGHKIPIELEKLIHLSELDLSYNFLGE 581 (614)
Q Consensus 511 ~~~~~~~l~~L~----~L~ls~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~L~~n~~~~ 581 (614)
.+..+..+++|+ .|++++|.+.+..+..+. ..+|+.|++++|++++..+..+..+++|++|++++|++..
T Consensus 165 ~~~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~~-~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c 238 (276)
T 2z62_A 165 YCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFK-EIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDC 238 (276)
T ss_dssp CGGGGHHHHTCTTCCEEEECCSSCCCEECTTSSC-SCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCC
T ss_pred CHHHhhhhhhccccceeeecCCCcccccCccccC-CCcccEEECCCCceeecCHhHhcccccccEEEccCCcccc
Confidence 333333333333 455555555533333222 2245555555555544444444555555555555555543
No 77
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.90 E-value=2.5e-23 Score=201.60 Aligned_cols=227 Identities=20% Similarity=0.191 Sum_probs=157.2
Q ss_pred CcEEEcccccCCccCCccccCCCCCCEEECcCCCCCCCCCccccCCCCCcEEEccCCcCCcccccccCCCCCCCEEECcC
Q 047332 353 LSELELCKNHLSGVIPHSIGNLTGLLLLNMCENHLSGPIPKSFKNLTSVERVLLNQNNLSGKVYEAFGDHPNLTFLNLSQ 432 (614)
Q Consensus 353 L~~L~l~~n~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~ 432 (614)
+..+++.++.+.+. .....+++|+.|++++|.++.. ..+..+++|++|++++|.+.+. ..+..+++|++|++++
T Consensus 21 l~~l~l~~~~~~~~--~~~~~l~~L~~L~l~~~~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~ 94 (272)
T 3rfs_A 21 TIKANLKKKSVTDA--VTQNELNSIDQIIANNSDIKSV--QGIQYLPNVRYLALGGNKLHDI--SALKELTNLTYLILTG 94 (272)
T ss_dssp HHHHHHTCSCTTSE--ECHHHHTTCCEEECTTSCCCCC--TTGGGCTTCCEEECTTSCCCCC--GGGTTCTTCCEEECTT
T ss_pred HHHHHhcCcccccc--cccccccceeeeeeCCCCcccc--cccccCCCCcEEECCCCCCCCc--hhhcCCCCCCEEECCC
Confidence 33444555554433 2245567888888888877643 3467788888888888887653 4677778888888888
Q ss_pred cccccccCccccCCCCCcEEEcccCcccccCCccCCCCCCCCEEeCCCCcCccccchhccCCCCCCEeeccCCccccCcc
Q 047332 433 NNFCGEISFNWRNFPKLGTFIVSVNNISGSIPPEIGDSPKLQVLDLSSNSIVGEIPVQLGKLFSLNKLILNLNQLSGGMP 512 (614)
Q Consensus 433 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~ 512 (614)
|.+.+..+..+..+++|++|++++|++++..+..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+++..+
T Consensus 95 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 174 (272)
T 3rfs_A 95 NQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPE 174 (272)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCT
T ss_pred CccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCH
Confidence 88776666666777777777777777776666666777777777777777775555556777777777777777776666
Q ss_pred ccccCCCCCCEEeCCCCcCcccCCccccccCCCCEEeCCCCcCCcCCChhhhcCCCCCeeeCCCCCCCCCCCccccCCCC
Q 047332 513 LELGSLTELQYLDLSANKLKSSIPKSIGNLLRLRYLDLSNNQFGHKIPIELEKLIHLSELDLSYNFLGEEIPFQICNVKS 592 (614)
Q Consensus 513 ~~~~~l~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~s 592 (614)
..+..+++|++|++++|.+.+..+..+..+++|+.|++++|++.+. ++.|+.++++.|.+.|.+|..++.++.
T Consensus 175 ~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~-------~~~l~~l~~~~n~~~g~ip~~~~~~~~ 247 (272)
T 3rfs_A 175 GVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCT-------CPGIRYLSEWINKHSGVVRNSAGSVAP 247 (272)
T ss_dssp TTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCC-------TTTTHHHHHHHHHTGGGBBCTTSCBCG
T ss_pred HHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCcccc-------CcHHHHHHHHHHhCCCcccCcccccCC
Confidence 6667777777777777777766666667777777777777776544 335667777777777777766655443
No 78
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.90 E-value=4.9e-23 Score=199.59 Aligned_cols=209 Identities=24% Similarity=0.282 Sum_probs=105.2
Q ss_pred ccCCCCCcEEECCCCCCCccCcccccCCCCCCEEeCCCCCCCCCCCcCCCCCCCCCEEEcccccCCCCCCccccCCCCCc
Q 047332 83 FSSFPHLVQLNLSFNIFFGIIPPQIGNLSKLQYLDLGSNQLSGVIPPEIGHLNQLRILYFDVNQLHGSIPPEIGQLSLIN 162 (614)
Q Consensus 83 ~~~l~~L~~L~Ls~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~ 162 (614)
...+++|++|+++++.+... ..+..+++|++|++++|.+++. ..+..+++|++|++++|.+++..+..+.++++|+
T Consensus 37 ~~~l~~L~~L~l~~~~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 112 (272)
T 3rfs_A 37 QNELNSIDQIIANNSDIKSV--QGIQYLPNVRYLALGGNKLHDI--SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLK 112 (272)
T ss_dssp HHHHTTCCEEECTTSCCCCC--TTGGGCTTCCEEECTTSCCCCC--GGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCC
T ss_pred cccccceeeeeeCCCCcccc--cccccCCCCcEEECCCCCCCCc--hhhcCCCCCCEEECCCCccCccChhHhcCCcCCC
Confidence 34455555555555554431 2345555555555555555532 2455555555555555555544444445555555
Q ss_pred EEEeccccCCCCCCcccCCCCCCcEEEeecCCCcccCCccccCCCCCCeeeccCccCCccCCccccCCCCCCeEEcccCc
Q 047332 163 VLALCHNNLYGSIPSSLGNLSNLANFYFNNNSLFDSIPLVLGNLNSLSTMDLSQNQFSGSIPLSLGNLSNLGILYLYSNS 242 (614)
Q Consensus 163 ~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~ 242 (614)
+|++++|.+++..+..+..+++|++|++++|.+.+..+ ..+..+++|++|++++|.
T Consensus 113 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~------------------------~~~~~l~~L~~L~l~~n~ 168 (272)
T 3rfs_A 113 ELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPK------------------------GVFDKLTNLTELDLSYNQ 168 (272)
T ss_dssp EEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCT------------------------TTTTTCTTCCEEECCSSC
T ss_pred EEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCH------------------------HHhccCccCCEEECCCCC
Confidence 55555555554444444444555555555444444333 334444445555555554
Q ss_pred cccccchhccCCCCCCEEeccCCcCccccCccccCCCCCCEEecCCCcccccCCccCCCCCCCCEeecCCCcccccCCcc
Q 047332 243 FSGSIPSIIGNLKSLLQLDLSENQLIGSIPLSFGNLSRLTLMSLFNNLLSGSLPPILGNLKSLSALGLHINQLSGVIPSS 322 (614)
Q Consensus 243 ~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~ 322 (614)
+++..+..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+.+ .+++|+.+++..|.+.|.+|.+
T Consensus 169 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~-------~~~~l~~l~~~~n~~~g~ip~~ 241 (272)
T 3rfs_A 169 LQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDC-------TCPGIRYLSEWINKHSGVVRNS 241 (272)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC-------CTTTTHHHHHHHHHTGGGBBCT
T ss_pred cCccCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCccc-------cCcHHHHHHHHHHhCCCcccCc
Confidence 444333334455555555555555554444445555555555555554432 2344555555556665555555
Q ss_pred ccCC
Q 047332 323 IGNL 326 (614)
Q Consensus 323 l~~~ 326 (614)
++.+
T Consensus 242 ~~~~ 245 (272)
T 3rfs_A 242 AGSV 245 (272)
T ss_dssp TSCB
T ss_pred cccc
Confidence 4443
No 79
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.90 E-value=3e-25 Score=222.83 Aligned_cols=212 Identities=13% Similarity=0.145 Sum_probs=119.7
Q ss_pred CCCccccceeeCCCCCEEEEEcCCCCCCcccCcccccCC--CCCcEEECCCCCCCccCcccccCCCCCCEEeCCCCCCCC
Q 047332 48 ISPCAWLGISCNQAGRVISINLSSMALNGTLQEFAFSSF--PHLVQLNLSFNIFFGIIPPQIGNLSKLQYLDLGSNQLSG 125 (614)
Q Consensus 48 ~~~c~w~~~~c~~~~~v~~l~l~~~~l~~~~~~~~~~~l--~~L~~L~Ls~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~ 125 (614)
..|.+|.++.|+. ..++.++++++.+.. ..+..+ +++++|++++|.+.+..+. +..+++|++|++++|.+++
T Consensus 34 ~vc~~W~~~~~~~-~~~~~l~l~~~~~~~----~~~~~~~~~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~ 107 (336)
T 2ast_B 34 GVCKRWYRLASDE-SLWQTLDLTGKNLHP----DVTGRLLSQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEV 107 (336)
T ss_dssp SSCHHHHHHHTCS-TTSSEEECTTCBCCH----HHHHHHHHTTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECH
T ss_pred HHHHHHHHHhcCc-hhheeeccccccCCH----HHHHhhhhccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCH
Confidence 4566799988753 356777777766552 145555 6777777777766665444 4456677777777766654
Q ss_pred C-CCcCCCCCCCCCEEEcccccCCCCCCccccCCCCCcEEEeccc-cCCC-CCCcccCCCCCCcEEEeecC-CCccc-CC
Q 047332 126 V-IPPEIGHLNQLRILYFDVNQLHGSIPPEIGQLSLINVLALCHN-NLYG-SIPSSLGNLSNLANFYFNNN-SLFDS-IP 200 (614)
Q Consensus 126 ~-~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~-~l~~-~~~~~l~~l~~L~~L~l~~~-~~~~~-~~ 200 (614)
. ++..+..+++|++|++++|.+++..+..++++++|++|++++| .+++ .++..+..+++|++|++++| .+.+. ++
T Consensus 108 ~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~ 187 (336)
T 2ast_B 108 STLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQ 187 (336)
T ss_dssp HHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHH
T ss_pred HHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHH
Confidence 3 5555666666777777666666555556666666666666666 4443 13444455556666666655 55432 33
Q ss_pred ccccCCC-CCCeeeccCc--cCC-ccCCccccCCCCCCeEEcccCc-cccccchhccCCCCCCEEeccCC
Q 047332 201 LVLGNLN-SLSTMDLSQN--QFS-GSIPLSLGNLSNLGILYLYSNS-FSGSIPSIIGNLKSLLQLDLSEN 265 (614)
Q Consensus 201 ~~l~~l~-~L~~L~l~~~--~~~-~~~~~~l~~l~~L~~L~L~~~~-~~~~~~~~l~~l~~L~~L~L~~n 265 (614)
..+..++ +|++|++++| .++ +.++..+..+++|++|++++|. +++..+..+..+++|++|++++|
T Consensus 188 ~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~ 257 (336)
T 2ast_B 188 VAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRC 257 (336)
T ss_dssp HHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTC
T ss_pred HHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCC
Confidence 3444555 5555555555 232 2233334444455555555554 33333444444445555555444
No 80
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.89 E-value=5.3e-22 Score=193.75 Aligned_cols=202 Identities=25% Similarity=0.202 Sum_probs=121.4
Q ss_pred ccCCCCCCEEECcCCCCCCCCCccccCCCCCcEEEccCCcCCcccccccCCCCCCCEEECcCcccccccCccccCCCCCc
Q 047332 371 IGNLTGLLLLNMCENHLSGPIPKSFKNLTSVERVLLNQNNLSGKVYEAFGDHPNLTFLNLSQNNFCGEISFNWRNFPKLG 450 (614)
Q Consensus 371 ~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~ 450 (614)
+..+++++.++++++.++. +|..+. +.++.|++++|.+.+..+..+..+++|++|++++|.+.+..+. ..+++|+
T Consensus 6 ~~~l~~l~~l~~~~~~l~~-ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~--~~l~~L~ 80 (290)
T 1p9a_G 6 VSKVASHLEVNCDKRNLTA-LPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD--GTLPVLG 80 (290)
T ss_dssp EECSTTCCEEECTTSCCSS-CCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC--SCCTTCC
T ss_pred ccccCCccEEECCCCCCCc-CCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCC--CCCCcCC
Confidence 4566777778887777764 333332 5677777777777766666777777777777777776654332 4566666
Q ss_pred EEEcccCcccccCCccCCCCCCCCEEeCCCCcCccccchhccCCCCCCEeeccCCccccCccccccCCCCCCEEeCCCCc
Q 047332 451 TFIVSVNNISGSIPPEIGDSPKLQVLDLSSNSIVGEIPVQLGKLFSLNKLILNLNQLSGGMPLELGSLTELQYLDLSANK 530 (614)
Q Consensus 451 ~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~ls~n~ 530 (614)
.|++++|.+. .+|..+..+++|++|++++|++++..+..|..+++|++|++++|.+++..+..|..+++|+.|++++|+
T Consensus 81 ~L~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~ 159 (290)
T 1p9a_G 81 TLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNN 159 (290)
T ss_dssp EEECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSC
T ss_pred EEECCCCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCc
Confidence 6666666665 445555555666666666666654444555555666666666666555444455555566666666666
Q ss_pred CcccCCccccccCCCCEEeCCCCcCCcCCChhhhcCCCCCeeeCCCCCC
Q 047332 531 LKSSIPKSIGNLLRLRYLDLSNNQFGHKIPIELEKLIHLSELDLSYNFL 579 (614)
Q Consensus 531 l~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~L~~n~~ 579 (614)
+.+..+..|..+++|+.|++++|+++ .+|..+..+++|+.++|++|++
T Consensus 160 l~~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~~~L~~l~L~~Np~ 207 (290)
T 1p9a_G 160 LTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPW 207 (290)
T ss_dssp CSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCB
T ss_pred CCccCHHHhcCcCCCCEEECCCCcCC-ccChhhcccccCCeEEeCCCCc
Confidence 55444444455556666666666553 3444445555555666655555
No 81
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.89 E-value=7e-24 Score=212.77 Aligned_cols=253 Identities=15% Similarity=0.153 Sum_probs=155.6
Q ss_pred CCCEEEccCCcccccCcccccCC--CCCcEEEcccccCCccCCccccCCCCCCEEECcCCCCCCC-CCccccCCCCCcEE
Q 047332 328 SLRALYLYNNGLCGFVPEEIRYL--KSLSELELCKNHLSGVIPHSIGNLTGLLLLNMCENHLSGP-IPKSFKNLTSVERV 404 (614)
Q Consensus 328 ~L~~L~l~~n~~~~~~~~~~~~~--~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~ls~n~l~~~-~~~~~~~~~~L~~L 404 (614)
.++.++++++.+.. ..+..+ +.++.+++++|.+.+..+. +..+++|++|++++|.+++. ++..+..+++|++|
T Consensus 48 ~~~~l~l~~~~~~~---~~~~~~~~~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L 123 (336)
T 2ast_B 48 LWQTLDLTGKNLHP---DVTGRLLSQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNL 123 (336)
T ss_dssp TSSEEECTTCBCCH---HHHHHHHHTTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEE
T ss_pred hheeeccccccCCH---HHHHhhhhccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEE
Confidence 46777787776652 334444 6777788877777765554 44567777777777776644 55566777777777
Q ss_pred EccCCcCCcccccccCCCCCCCEEECcCc-ccccc-cCccccCCCCCcEEEcccC-ccccc-CCccCCCCC-CCCEEeCC
Q 047332 405 LLNQNNLSGKVYEAFGDHPNLTFLNLSQN-NFCGE-ISFNWRNFPKLGTFIVSVN-NISGS-IPPEIGDSP-KLQVLDLS 479 (614)
Q Consensus 405 ~l~~n~~~~~~~~~~~~~~~L~~L~l~~~-~~~~~-~~~~~~~~~~L~~L~l~~~-~~~~~-~~~~~~~~~-~L~~L~l~ 479 (614)
++++|.+++..+..+..+++|++|++++| .+.+. ++..+..+++|+.|++++| .+++. ++..+..++ +|++|+++
T Consensus 124 ~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~ 203 (336)
T 2ast_B 124 SLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLS 203 (336)
T ss_dssp ECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECC
T ss_pred eCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeC
Confidence 77777776666666667777777777777 45542 3444556677777777776 66543 344455566 67777777
Q ss_pred CC--cCc-cccchhccCCCCCCEeeccCCc-cccCccccccCCCCCCEEeCCCCc-CcccCCccccccCCCCEEeCCCCc
Q 047332 480 SN--SIV-GEIPVQLGKLFSLNKLILNLNQ-LSGGMPLELGSLTELQYLDLSANK-LKSSIPKSIGNLLRLRYLDLSNNQ 554 (614)
Q Consensus 480 ~~--~~~-~~~~~~~~~~~~L~~L~l~~n~-~~~~~~~~~~~l~~L~~L~ls~n~-l~~~~~~~l~~l~~L~~L~l~~n~ 554 (614)
+| .++ +.++..+..+++|++|++++|. +++..+..+..+++|++|++++|. +.......+..+++|+.|++++|
T Consensus 204 ~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~- 282 (336)
T 2ast_B 204 GYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI- 282 (336)
T ss_dssp SCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS-
T ss_pred CCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc-
Confidence 76 343 3445555666667777777666 554555566666677777776664 22222224566666777777666
Q ss_pred CCcCCChhhhcC-CCCCeeeCCCCCCCCCCCcccc
Q 047332 555 FGHKIPIELEKL-IHLSELDLSYNFLGEEIPFQIC 588 (614)
Q Consensus 555 ~~~~~p~~l~~l-~~L~~L~L~~n~~~~~~p~~l~ 588 (614)
++.. .+..+ ..++.|++++|++++..|..+.
T Consensus 283 i~~~---~~~~l~~~l~~L~l~~n~l~~~~~~~~~ 314 (336)
T 2ast_B 283 VPDG---TLQLLKEALPHLQINCSHFTTIARPTIG 314 (336)
T ss_dssp SCTT---CHHHHHHHSTTSEESCCCSCCTTCSSCS
T ss_pred cCHH---HHHHHHhhCcceEEecccCccccCCccc
Confidence 3322 22222 2355556666666666665544
No 82
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.88 E-value=1.4e-21 Score=190.75 Aligned_cols=132 Identities=23% Similarity=0.247 Sum_probs=60.3
Q ss_pred ccCCCCCcEEECCCCCCCccCcccccCCCCCCEEeCCCCCCCCCCCcCCCCCCCCCEEEcccccCCCCCCccccCCCCCc
Q 047332 83 FSSFPHLVQLNLSFNIFFGIIPPQIGNLSKLQYLDLGSNQLSGVIPPEIGHLNQLRILYFDVNQLHGSIPPEIGQLSLIN 162 (614)
Q Consensus 83 ~~~l~~L~~L~Ls~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~ 162 (614)
+..++++++++++++.++. +|..+. +++++|++++|.+++..+..|..+++|++|++++|.+++. +. ...+++|+
T Consensus 6 ~~~l~~l~~l~~~~~~l~~-ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~-~~~l~~L~ 80 (290)
T 1p9a_G 6 VSKVASHLEVNCDKRNLTA-LPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKL-QV-DGTLPVLG 80 (290)
T ss_dssp EECSTTCCEEECTTSCCSS-CCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEE-EC-CSCCTTCC
T ss_pred ccccCCccEEECCCCCCCc-CCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcc-cC-CCCCCcCC
Confidence 4455555555555555543 333332 4555555555555544444555555555555555555422 11 14444555
Q ss_pred EEEeccccCCCCCCcccCCCCCCcEEEeecCCCcccCCccccCCCCCCeeeccCccCC
Q 047332 163 VLALCHNNLYGSIPSSLGNLSNLANFYFNNNSLFDSIPLVLGNLNSLSTMDLSQNQFS 220 (614)
Q Consensus 163 ~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 220 (614)
+|++++|.++ .+|..+..+++|++|++++|.+++..+..|..+++|++|++++|.++
T Consensus 81 ~L~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~ 137 (290)
T 1p9a_G 81 TLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELK 137 (290)
T ss_dssp EEECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCC
T ss_pred EEECCCCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCC
Confidence 5555554444 33333344444444444444443333333333333333333333333
No 83
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.88 E-value=7.9e-22 Score=188.68 Aligned_cols=192 Identities=22% Similarity=0.275 Sum_probs=144.1
Q ss_pred CCccccceeeCCCCCEEEEEcCCCCCCcccCcccccCCCCCcEEECCCCCCCccCcccccCCCCCCEEeCCCCCCCCCCC
Q 047332 49 SPCAWLGISCNQAGRVISINLSSMALNGTLQEFAFSSFPHLVQLNLSFNIFFGIIPPQIGNLSKLQYLDLGSNQLSGVIP 128 (614)
Q Consensus 49 ~~c~w~~~~c~~~~~v~~l~l~~~~l~~~~~~~~~~~l~~L~~L~Ls~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~ 128 (614)
+|+.|.|..|.. ..+.++++++.++. +|. .+. +++++|++++|.+++..+..|.++++|++|++++|.+++..+
T Consensus 3 ~Cp~~~gC~C~~--~~~~l~~~~~~l~~-~p~-~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 76 (251)
T 3m19_A 3 TCETVTGCTCNE--GKKEVDCQGKSLDS-VPS-GIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSA 76 (251)
T ss_dssp -CHHHHSSEEEG--GGTEEECTTCCCSS-CCS-CCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCT
T ss_pred cCCCCCceEcCC--CCeEEecCCCCccc-cCC-CCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCH
Confidence 588999999953 33467888887764 333 222 578888998888888877788888888888888888887777
Q ss_pred cCCCCCCCCCEEEcccccCCCCCCccccCCCCCcEEEeccccCCCCCCcccCCCCCCcEEEeecCCCcccCCccccCCCC
Q 047332 129 PEIGHLNQLRILYFDVNQLHGSIPPEIGQLSLINVLALCHNNLYGSIPSSLGNLSNLANFYFNNNSLFDSIPLVLGNLNS 208 (614)
Q Consensus 129 ~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~ 208 (614)
..|..+++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+.+..+..+..+++
T Consensus 77 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~ 156 (251)
T 3m19_A 77 GVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTN 156 (251)
T ss_dssp TTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTT
T ss_pred hHhccCCcCCEEECCCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcC
Confidence 77888888888888888888666667788888888888888888666666677777888888777777665556777777
Q ss_pred CCeeeccCccCCccCCccccCCCCCCeEEcccCccccc
Q 047332 209 LSTMDLSQNQFSGSIPLSLGNLSNLGILYLYSNSFSGS 246 (614)
Q Consensus 209 L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~ 246 (614)
|++|++++|.+++..+..+..+++|++|++++|.+.+.
T Consensus 157 L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~ 194 (251)
T 3m19_A 157 LQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDCS 194 (251)
T ss_dssp CCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCTT
T ss_pred CCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCceeCC
Confidence 77777777777755555666667777777777666543
No 84
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.88 E-value=5.2e-22 Score=196.39 Aligned_cols=226 Identities=18% Similarity=0.146 Sum_probs=116.8
Q ss_pred CCcEEECCCCCCCccCcc---cccCCCCCCEEeCCCCCCCCCCCcCC--CCCCCCCEEEcccccCCCCCC----ccccCC
Q 047332 88 HLVQLNLSFNIFFGIIPP---QIGNLSKLQYLDLGSNQLSGVIPPEI--GHLNQLRILYFDVNQLHGSIP----PEIGQL 158 (614)
Q Consensus 88 ~L~~L~Ls~~~~~~~~~~---~l~~l~~L~~L~Ls~n~l~~~~~~~l--~~l~~L~~L~l~~n~~~~~~~----~~~~~l 158 (614)
.++.+.+.++.++..... .+..+++|++|++++|.+.+..|..+ ..+++|++|++++|.+.+..+ ..+..+
T Consensus 65 ~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~ 144 (310)
T 4glp_A 65 RVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLK 144 (310)
T ss_dssp CCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBC
T ss_pred ceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhc
Confidence 355566665554321000 11123456666666666666665555 566666666666666554333 223345
Q ss_pred CCCcEEEeccccCCCCCCcccCCCCCCcEEEeecCCCccc--CCccccCCCCCCeeeccCccCCccCCccccCCCCCCeE
Q 047332 159 SLINVLALCHNNLYGSIPSSLGNLSNLANFYFNNNSLFDS--IPLVLGNLNSLSTMDLSQNQFSGSIPLSLGNLSNLGIL 236 (614)
Q Consensus 159 ~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~--~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L 236 (614)
++|++|++++|.+.+..+..+..+++|++|++++|.+.+. ++. +..+..+++|++|
T Consensus 145 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~----------------------~~~~~~l~~L~~L 202 (310)
T 4glp_A 145 PGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMA----------------------ALCPHKFPAIQNL 202 (310)
T ss_dssp SCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHT----------------------TSCTTSSCCCCSC
T ss_pred cCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhH----------------------HHhhhcCCCCCEE
Confidence 5555555555555555455555555555555555554331 110 1112344445555
Q ss_pred EcccCccccccch----hccCCCCCCEEeccCCcCccccCccccCC---CCCCEEecCCCcccccCCccCCCCCCCCEee
Q 047332 237 YLYSNSFSGSIPS----IIGNLKSLLQLDLSENQLIGSIPLSFGNL---SRLTLMSLFNNLLSGSLPPILGNLKSLSALG 309 (614)
Q Consensus 237 ~L~~~~~~~~~~~----~l~~l~~L~~L~L~~n~~~~~~~~~l~~l---~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~ 309 (614)
++++|.++ .++. .+..+++|++|++++|.+.+..|..+..+ ++|++|++++|.++ .+|..+. ++|++|+
T Consensus 203 ~Ls~N~l~-~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~ 278 (310)
T 4glp_A 203 ALRNTGME-TPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE-QVPKGLP--AKLRVLD 278 (310)
T ss_dssp BCCSSCCC-CHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC-SCCSCCC--SCCSCEE
T ss_pred ECCCCCCC-chHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC-chhhhhc--CCCCEEE
Confidence 55555443 1111 13445556666666665555445444444 46666666666666 4444443 5666666
Q ss_pred cCCCcccccCCccccCCCCCCEEEccCCcccc
Q 047332 310 LHINQLSGVIPSSIGNLSSLRALYLYNNGLCG 341 (614)
Q Consensus 310 L~~n~l~~~~~~~l~~~~~L~~L~l~~n~~~~ 341 (614)
+++|++++. |. +..+++|+.|++++|++++
T Consensus 279 Ls~N~l~~~-~~-~~~l~~L~~L~L~~N~l~~ 308 (310)
T 4glp_A 279 LSSNRLNRA-PQ-PDELPEVDNLTLDGNPFLV 308 (310)
T ss_dssp CCSCCCCSC-CC-TTSCCCCSCEECSSTTTSC
T ss_pred CCCCcCCCC-ch-hhhCCCccEEECcCCCCCC
Confidence 666666643 22 4556667777777766653
No 85
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.88 E-value=1.9e-24 Score=221.09 Aligned_cols=241 Identities=20% Similarity=0.251 Sum_probs=161.6
Q ss_pred CcccccCCCCCcEEEcccccCCccCC----ccccCCCCCCEEECcCCCC---CCCCCccc-------cCCCCCcEEEccC
Q 047332 343 VPEEIRYLKSLSELELCKNHLSGVIP----HSIGNLTGLLLLNMCENHL---SGPIPKSF-------KNLTSVERVLLNQ 408 (614)
Q Consensus 343 ~~~~~~~~~~L~~L~l~~n~~~~~~~----~~~~~l~~L~~L~ls~n~l---~~~~~~~~-------~~~~~L~~L~l~~ 408 (614)
++..+..+++|++|++++|.+++..+ ..+..+++|+.|++++|.+ ++.+|..+ ..+++|++|++++
T Consensus 24 l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~ 103 (386)
T 2ca6_A 24 VFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSD 103 (386)
T ss_dssp TSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCS
T ss_pred HHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCC
Confidence 45566778889999999998886533 3466788899999988643 33444443 6778888888888
Q ss_pred CcCCc----ccccccCCCCCCCEEECcCcccccccCcc----ccCC---------CCCcEEEcccCccc-ccCC---ccC
Q 047332 409 NNLSG----KVYEAFGDHPNLTFLNLSQNNFCGEISFN----WRNF---------PKLGTFIVSVNNIS-GSIP---PEI 467 (614)
Q Consensus 409 n~~~~----~~~~~~~~~~~L~~L~l~~~~~~~~~~~~----~~~~---------~~L~~L~l~~~~~~-~~~~---~~~ 467 (614)
|.+.. ..+..+..+++|++|++++|.+.+..+.. +..+ ++|+.|++++|+++ +.++ ..+
T Consensus 104 n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l 183 (386)
T 2ca6_A 104 NAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTF 183 (386)
T ss_dssp CCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHH
T ss_pred CcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHH
Confidence 88876 34556677788888888888875433222 2223 67777777777776 2233 344
Q ss_pred CCCCCCCEEeCCCCcCcc-----ccchhccCCCCCCEeeccCCccc----cCccccccCCCCCCEEeCCCCcCccc----
Q 047332 468 GDSPKLQVLDLSSNSIVG-----EIPVQLGKLFSLNKLILNLNQLS----GGMPLELGSLTELQYLDLSANKLKSS---- 534 (614)
Q Consensus 468 ~~~~~L~~L~l~~~~~~~-----~~~~~~~~~~~L~~L~l~~n~~~----~~~~~~~~~l~~L~~L~ls~n~l~~~---- 534 (614)
..+++|++|++++|.+.. ..+..+..+++|++|++++|.++ +.+|..+..+++|+.|++++|.+++.
T Consensus 184 ~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~ 263 (386)
T 2ca6_A 184 QSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAA 263 (386)
T ss_dssp HHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHH
T ss_pred HhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHH
Confidence 556777777777777652 22335666777777777777774 34566667777777777777777654
Q ss_pred CCccccc--cCCCCEEeCCCCcCCc----CCChhh-hcCCCCCeeeCCCCCCCCCC
Q 047332 535 IPKSIGN--LLRLRYLDLSNNQFGH----KIPIEL-EKLIHLSELDLSYNFLGEEI 583 (614)
Q Consensus 535 ~~~~l~~--l~~L~~L~l~~n~~~~----~~p~~l-~~l~~L~~L~L~~n~~~~~~ 583 (614)
++..+.. +++|++|++++|.+++ .+|..+ .++++|++|++++|++.+..
T Consensus 264 l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~ 319 (386)
T 2ca6_A 264 VVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEED 319 (386)
T ss_dssp HHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTS
T ss_pred HHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcch
Confidence 3444533 6777777777777766 355555 45677777777777776655
No 86
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.88 E-value=5.5e-24 Score=215.39 Aligned_cols=254 Identities=20% Similarity=0.193 Sum_probs=150.1
Q ss_pred EeecCCCcccccCCccccCCCCCCEEEccCCcccccCc----ccccCCC-CCcEEEcccccCCccCCccccCC-----CC
Q 047332 307 ALGLHINQLSGVIPSSIGNLSSLRALYLYNNGLCGFVP----EEIRYLK-SLSELELCKNHLSGVIPHSIGNL-----TG 376 (614)
Q Consensus 307 ~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~~~~~~~----~~~~~~~-~L~~L~l~~n~~~~~~~~~~~~l-----~~ 376 (614)
.+.++.|.+++.+|..+...++|++|++++|.+.+..+ ..+..++ +|++|++++|.+++..+..+..+ ++
T Consensus 2 ~~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~ 81 (362)
T 3goz_A 2 NYKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPAN 81 (362)
T ss_dssp EEECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTT
T ss_pred ccccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCC
Confidence 35677778877777666666668888888888877665 5666677 78888888888776655555543 77
Q ss_pred CCEEECcCCCCCCCCCcc----ccCC-CCCcEEEccCCcCCccccccc----CC-CCCCCEEECcCcccccccC----cc
Q 047332 377 LLLLNMCENHLSGPIPKS----FKNL-TSVERVLLNQNNLSGKVYEAF----GD-HPNLTFLNLSQNNFCGEIS----FN 442 (614)
Q Consensus 377 L~~L~ls~n~l~~~~~~~----~~~~-~~L~~L~l~~n~~~~~~~~~~----~~-~~~L~~L~l~~~~~~~~~~----~~ 442 (614)
|++|++++|.+++..+.. +..+ ++|++|++++|.+++.....+ .. .++|++|++++|.+.+... ..
T Consensus 82 L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~ 161 (362)
T 3goz_A 82 VTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQI 161 (362)
T ss_dssp CCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHH
T ss_pred ccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHH
Confidence 778888877776554443 3333 677777777777765544332 33 2477777777777664322 22
Q ss_pred ccCCC-CCcEEEcccCcccccCCcc----CCCC-CCCCEEeCCCCcCccc----cchhccC-CCCCCEeeccCCccccCc
Q 047332 443 WRNFP-KLGTFIVSVNNISGSIPPE----IGDS-PKLQVLDLSSNSIVGE----IPVQLGK-LFSLNKLILNLNQLSGGM 511 (614)
Q Consensus 443 ~~~~~-~L~~L~l~~~~~~~~~~~~----~~~~-~~L~~L~l~~~~~~~~----~~~~~~~-~~~L~~L~l~~n~~~~~~ 511 (614)
+..++ +|+.|++++|++++..+.. +..+ ++|++|++++|.+.+. ++..+.. .++|++|++++|.+++..
T Consensus 162 l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~ 241 (362)
T 3goz_A 162 LAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPS 241 (362)
T ss_dssp HHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCC
T ss_pred HhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHH
Confidence 23333 6666666666665444322 2233 3666666666666532 2333333 346666666666665432
Q ss_pred c----ccccCCCCCCEEeCCCCcCcccC-------CccccccCCCCEEeCCCCcCCcCCC
Q 047332 512 P----LELGSLTELQYLDLSANKLKSSI-------PKSIGNLLRLRYLDLSNNQFGHKIP 560 (614)
Q Consensus 512 ~----~~~~~l~~L~~L~ls~n~l~~~~-------~~~l~~l~~L~~L~l~~n~~~~~~p 560 (614)
+ ..+..+++|+.|++++|.+.+.. +..+..+++|+.|++++|++.+..+
T Consensus 242 ~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~~~~ 301 (362)
T 3goz_A 242 LENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPSHS 301 (362)
T ss_dssp HHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCGGGC
T ss_pred HHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCCcch
Confidence 2 22345556666666666533221 1234455556666666666554433
No 87
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.88 E-value=8e-24 Score=214.22 Aligned_cols=254 Identities=18% Similarity=0.160 Sum_probs=177.6
Q ss_pred EEEccCCcccccCcccccCCCCCcEEEcccccCCccCC----ccccCCC-CCCEEECcCCCCCCCCCccccCC-----CC
Q 047332 331 ALYLYNNGLCGFVPEEIRYLKSLSELELCKNHLSGVIP----HSIGNLT-GLLLLNMCENHLSGPIPKSFKNL-----TS 400 (614)
Q Consensus 331 ~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~----~~~~~l~-~L~~L~ls~n~l~~~~~~~~~~~-----~~ 400 (614)
.+.++.|.+++.+|..+...++|++|++++|.+++..+ ..+..++ +|++|++++|.+++..+..+..+ ++
T Consensus 2 ~~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~ 81 (362)
T 3goz_A 2 NYKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPAN 81 (362)
T ss_dssp EEECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTT
T ss_pred ccccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCC
Confidence 45788888888888877777779999999999887665 6677777 89999999998887666666554 88
Q ss_pred CcEEEccCCcCCcccccc----cCCC-CCCCEEECcCcccccccCcc----ccC-CCCCcEEEcccCcccccC----Ccc
Q 047332 401 VERVLLNQNNLSGKVYEA----FGDH-PNLTFLNLSQNNFCGEISFN----WRN-FPKLGTFIVSVNNISGSI----PPE 466 (614)
Q Consensus 401 L~~L~l~~n~~~~~~~~~----~~~~-~~L~~L~l~~~~~~~~~~~~----~~~-~~~L~~L~l~~~~~~~~~----~~~ 466 (614)
|++|++++|.+++..+.. +..+ ++|++|++++|.+.+..+.. +.. .++|++|++++|.+++.. +..
T Consensus 82 L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~ 161 (362)
T 3goz_A 82 VTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQI 161 (362)
T ss_dssp CCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHH
T ss_pred ccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHH
Confidence 888999888887665553 3334 78888888888887654433 233 358888888888877433 233
Q ss_pred CCCCC-CCCEEeCCCCcCccccchh----ccCC-CCCCEeeccCCccccC----ccccccC-CCCCCEEeCCCCcCcccC
Q 047332 467 IGDSP-KLQVLDLSSNSIVGEIPVQ----LGKL-FSLNKLILNLNQLSGG----MPLELGS-LTELQYLDLSANKLKSSI 535 (614)
Q Consensus 467 ~~~~~-~L~~L~l~~~~~~~~~~~~----~~~~-~~L~~L~l~~n~~~~~----~~~~~~~-l~~L~~L~ls~n~l~~~~ 535 (614)
+..++ +|++|++++|.+++..+.. +..+ ++|++|++++|.+.+. ++..+.. .++|++|++++|.+.+..
T Consensus 162 l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~ 241 (362)
T 3goz_A 162 LAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPS 241 (362)
T ss_dssp HHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCC
T ss_pred HhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHH
Confidence 34444 7888888888877555433 3344 5888888888887753 3444444 457888888888877654
Q ss_pred C----ccccccCCCCEEeCCCCcCCcCCC-------hhhhcCCCCCeeeCCCCCCCCCCC
Q 047332 536 P----KSIGNLLRLRYLDLSNNQFGHKIP-------IELEKLIHLSELDLSYNFLGEEIP 584 (614)
Q Consensus 536 ~----~~l~~l~~L~~L~l~~n~~~~~~p-------~~l~~l~~L~~L~L~~n~~~~~~p 584 (614)
+ ..+..+++|++|++++|.+.+..+ ..+..+++|+.||+++|++....+
T Consensus 242 ~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~~~~ 301 (362)
T 3goz_A 242 LENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPSHS 301 (362)
T ss_dssp HHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCGGGC
T ss_pred HHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCCcch
Confidence 4 234566788888888887543322 245566778888888888766544
No 88
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.87 E-value=4.4e-21 Score=183.51 Aligned_cols=180 Identities=23% Similarity=0.208 Sum_probs=97.2
Q ss_pred CCcEEEccCCcCCcccccccCCCCCCCEEECcCcccccccCccccCCCCCcEEEcccCcccccCCccCCCCCCCCEEeCC
Q 047332 400 SVERVLLNQNNLSGKVYEAFGDHPNLTFLNLSQNNFCGEISFNWRNFPKLGTFIVSVNNISGSIPPEIGDSPKLQVLDLS 479 (614)
Q Consensus 400 ~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~ 479 (614)
..++++++++.++. +|..+. +.++.|++++|.+.+..+..+..+++|++|++++|.+++..+..+..+++|++|+++
T Consensus 15 ~~~~l~~~~~~l~~-~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 91 (251)
T 3m19_A 15 GKKEVDCQGKSLDS-VPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLA 91 (251)
T ss_dssp GGTEEECTTCCCSS-CCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECT
T ss_pred CCeEEecCCCCccc-cCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECC
Confidence 34556666665552 222222 456666666666655555555555566666666655555444455555555555555
Q ss_pred CCcCccccchhccCCCCCCEeeccCCccccCccccccCCCCCCEEeCCCCcCcccCCccccccCCCCEEeCCCCcCCcCC
Q 047332 480 SNSIVGEIPVQLGKLFSLNKLILNLNQLSGGMPLELGSLTELQYLDLSANKLKSSIPKSIGNLLRLRYLDLSNNQFGHKI 559 (614)
Q Consensus 480 ~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~ 559 (614)
+|.+.+..+..+..+++|++|++++|.+++..+..|..+++|++|++++|.+.+..+..|..+++|++|++++|++++..
T Consensus 92 ~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~ 171 (251)
T 3m19_A 92 NNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVP 171 (251)
T ss_dssp TSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCC
T ss_pred CCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccC
Confidence 55555444444555555555555555555444444555555555555555555444444555555555555555555444
Q ss_pred ChhhhcCCCCCeeeCCCCCCCCC
Q 047332 560 PIELEKLIHLSELDLSYNFLGEE 582 (614)
Q Consensus 560 p~~l~~l~~L~~L~L~~n~~~~~ 582 (614)
+..+..+++|+.|++++|++...
T Consensus 172 ~~~~~~l~~L~~L~l~~N~~~c~ 194 (251)
T 3m19_A 172 HGAFDRLGKLQTITLFGNQFDCS 194 (251)
T ss_dssp TTTTTTCTTCCEEECCSCCBCTT
T ss_pred HHHHhCCCCCCEEEeeCCceeCC
Confidence 44555555555555555555443
No 89
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.87 E-value=1.2e-23 Score=215.08 Aligned_cols=258 Identities=20% Similarity=0.229 Sum_probs=172.5
Q ss_pred CccccCCCCCCEEEccCCcccccCc----ccccCCCCCcEEEccccc---CCccCCccc-------cCCCCCCEEECcCC
Q 047332 320 PSSIGNLSSLRALYLYNNGLCGFVP----EEIRYLKSLSELELCKNH---LSGVIPHSI-------GNLTGLLLLNMCEN 385 (614)
Q Consensus 320 ~~~l~~~~~L~~L~l~~n~~~~~~~----~~~~~~~~L~~L~l~~n~---~~~~~~~~~-------~~l~~L~~L~ls~n 385 (614)
+..+..+++|+.|++++|.+.+..+ ..+..+++|++|++++|. +++.+|..+ ..+++|++|++++|
T Consensus 25 ~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n 104 (386)
T 2ca6_A 25 FAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDN 104 (386)
T ss_dssp SHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSC
T ss_pred HHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCC
Confidence 3344445555555555555554322 224455566666665542 222333322 55667777777777
Q ss_pred CCCC----CCCccccCCCCCcEEEccCCcCCcccccccC----CC---------CCCCEEECcCccccc-ccC---cccc
Q 047332 386 HLSG----PIPKSFKNLTSVERVLLNQNNLSGKVYEAFG----DH---------PNLTFLNLSQNNFCG-EIS---FNWR 444 (614)
Q Consensus 386 ~l~~----~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~----~~---------~~L~~L~l~~~~~~~-~~~---~~~~ 444 (614)
.+++ .++..+..+++|++|++++|.++...+..+. .+ ++|++|++++|.+.. .++ ..+.
T Consensus 105 ~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~ 184 (386)
T 2ca6_A 105 AFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQ 184 (386)
T ss_dssp CCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHH
Confidence 7665 3455666777777777777777544333332 22 788888888888763 233 3456
Q ss_pred CCCCCcEEEcccCcccc-----cCCccCCCCCCCCEEeCCCCcCc----cccchhccCCCCCCEeeccCCccccC----c
Q 047332 445 NFPKLGTFIVSVNNISG-----SIPPEIGDSPKLQVLDLSSNSIV----GEIPVQLGKLFSLNKLILNLNQLSGG----M 511 (614)
Q Consensus 445 ~~~~L~~L~l~~~~~~~-----~~~~~~~~~~~L~~L~l~~~~~~----~~~~~~~~~~~~L~~L~l~~n~~~~~----~ 511 (614)
.+++|+.|++++|.++. ..+..+..+++|++|++++|.++ +.+|..+..+++|++|++++|.+++. +
T Consensus 185 ~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l 264 (386)
T 2ca6_A 185 SHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAV 264 (386)
T ss_dssp HCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHH
T ss_pred hCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHH
Confidence 67888888888888772 23336778899999999999986 56777888899999999999998865 4
Q ss_pred cccccC--CCCCCEEeCCCCcCcc----cCCccc-cccCCCCEEeCCCCcCCcCCC--hhhh-cCCCCCeeeCCCC
Q 047332 512 PLELGS--LTELQYLDLSANKLKS----SIPKSI-GNLLRLRYLDLSNNQFGHKIP--IELE-KLIHLSELDLSYN 577 (614)
Q Consensus 512 ~~~~~~--l~~L~~L~ls~n~l~~----~~~~~l-~~l~~L~~L~l~~n~~~~~~p--~~l~-~l~~L~~L~L~~n 577 (614)
+..+.. +++|+.|++++|.+.+ .+|..+ .++++|+.|++++|++++..+ ..+. .++.++.+++...
T Consensus 265 ~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~~~~~~l~~~l~~~~~~~l~~~ 340 (386)
T 2ca6_A 265 VDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDDVVDEIREVFSTRGRGELDEL 340 (386)
T ss_dssp HHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTSHHHHHHHHHHHHHTCCEECCC
T ss_pred HHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcchhHHHHHHHHhhhcCcchhhhc
Confidence 556643 8999999999999987 477777 668999999999999988764 3332 2445555555443
No 90
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.87 E-value=2e-21 Score=184.51 Aligned_cols=197 Identities=18% Similarity=0.204 Sum_probs=133.5
Q ss_pred CCCcEEECCCCCCCccCcccccCCCCCCEEeCCCCC-CCCCCCcCCCCCCCCCEEEccc-ccCCCCCCccccCCCCCcEE
Q 047332 87 PHLVQLNLSFNIFFGIIPPQIGNLSKLQYLDLGSNQ-LSGVIPPEIGHLNQLRILYFDV-NQLHGSIPPEIGQLSLINVL 164 (614)
Q Consensus 87 ~~L~~L~Ls~~~~~~~~~~~l~~l~~L~~L~Ls~n~-l~~~~~~~l~~l~~L~~L~l~~-n~~~~~~~~~~~~l~~L~~L 164 (614)
++|++|++++|.+++..+..|..+++|++|++++|. ++...+..|..+++|++|++++ |.+++..+..|.++++|++|
T Consensus 31 ~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L 110 (239)
T 2xwt_C 31 PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFL 110 (239)
T ss_dssp TTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEE
T ss_pred CcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEE
Confidence 378889999988888777788888899999998886 7766566788888888888888 88876656678888888888
Q ss_pred EeccccCCCCCCcccCCCCCCc---EEEeecC-CCcccCCccccCCCCCC-eeeccCccCCccCCccccCCCCCCeEEcc
Q 047332 165 ALCHNNLYGSIPSSLGNLSNLA---NFYFNNN-SLFDSIPLVLGNLNSLS-TMDLSQNQFSGSIPLSLGNLSNLGILYLY 239 (614)
Q Consensus 165 ~l~~~~l~~~~~~~l~~l~~L~---~L~l~~~-~~~~~~~~~l~~l~~L~-~L~l~~~~~~~~~~~~l~~l~~L~~L~L~ 239 (614)
++++|.+++ +|. +..+++|+ +|++++| .+.+..+..|..+++|+ .|++++|.++ .+|......++|++|+++
T Consensus 111 ~l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~-~i~~~~~~~~~L~~L~L~ 187 (239)
T 2xwt_C 111 GIFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFT-SVQGYAFNGTKLDAVYLN 187 (239)
T ss_dssp EEEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCC-EECTTTTTTCEEEEEECT
T ss_pred eCCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCc-ccCHhhcCCCCCCEEEcC
Confidence 888888875 555 66777776 7777777 66665555566677777 7777777666 333322222566666666
Q ss_pred cCc-cccccchhccCC-CCCCEEeccCCcCccccCccccCCCCCCEEecCCC
Q 047332 240 SNS-FSGSIPSIIGNL-KSLLQLDLSENQLIGSIPLSFGNLSRLTLMSLFNN 289 (614)
Q Consensus 240 ~~~-~~~~~~~~l~~l-~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~~ 289 (614)
+|. +++..+..+..+ ++|++|++++|.+.+ +|.. .+++|+.|++.++
T Consensus 188 ~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~-l~~~--~~~~L~~L~l~~~ 236 (239)
T 2xwt_C 188 KNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTA-LPSK--GLEHLKELIARNT 236 (239)
T ss_dssp TCTTCCEECTTTTTTCSBCCSEEECTTCCCCC-CCCT--TCTTCSEEECTTC
T ss_pred CCCCcccCCHHHhhccccCCcEEECCCCcccc-CChh--HhccCceeeccCc
Confidence 663 554334445555 556666666655542 2222 3445555555443
No 91
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.87 E-value=6.5e-22 Score=195.67 Aligned_cols=205 Identities=21% Similarity=0.204 Sum_probs=129.2
Q ss_pred CCCCEEECcCCCCCCCCCccc--cCCCCCcEEEccCCcCCcccccccCCCCCCCEEECcCcccccccCccccCCCCCcEE
Q 047332 375 TGLLLLNMCENHLSGPIPKSF--KNLTSVERVLLNQNNLSGKVYEAFGDHPNLTFLNLSQNNFCGEISFNWRNFPKLGTF 452 (614)
Q Consensus 375 ~~L~~L~ls~n~l~~~~~~~~--~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L 452 (614)
++|++|++++|.+++..+..+ ..+++|++|++++|.+.+..+.. ....+..+++|++|
T Consensus 91 ~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~--------------------~~~~~~~~~~L~~L 150 (310)
T 4glp_A 91 SRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWL--------------------AELQQWLKPGLKVL 150 (310)
T ss_dssp SCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSH--------------------HHHHTTBCSCCCEE
T ss_pred CceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhh--------------------HHHHhhhccCCCEE
Confidence 346666666666655555554 55555555555555554321100 00122345566666
Q ss_pred EcccCcccccCCccCCCCCCCCEEeCCCCcCccc--c--chhccCCCCCCEeeccCCccccCccc----cccCCCCCCEE
Q 047332 453 IVSVNNISGSIPPEIGDSPKLQVLDLSSNSIVGE--I--PVQLGKLFSLNKLILNLNQLSGGMPL----ELGSLTELQYL 524 (614)
Q Consensus 453 ~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~--~--~~~~~~~~~L~~L~l~~n~~~~~~~~----~~~~l~~L~~L 524 (614)
++++|.+.+..+..+..+++|++|++++|++.+. + +..+..+++|++|++++|.++. ++. .+..+++|++|
T Consensus 151 ~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~~l~~L~~L 229 (310)
T 4glp_A 151 SIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMET-PTGVCAALAAAGVQPHSL 229 (310)
T ss_dssp EEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCC-HHHHHHHHHHHTCCCSSE
T ss_pred EeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCc-hHHHHHHHHhcCCCCCEE
Confidence 6666666555555666667777777777765432 1 1223566777777777777762 222 24667788888
Q ss_pred eCCCCcCcccCCcccccc---CCCCEEeCCCCcCCcCCChhhhcCCCCCeeeCCCCCCCCCCCccccCCCCCCeEECcCC
Q 047332 525 DLSANKLKSSIPKSIGNL---LRLRYLDLSNNQFGHKIPIELEKLIHLSELDLSYNFLGEEIPFQICNVKSLEKLNLCHN 601 (614)
Q Consensus 525 ~ls~n~l~~~~~~~l~~l---~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~sL~~L~l~~n 601 (614)
++++|.+.+..|..+..+ ++|++|++++|+++ .+|..+. ++|++|+|++|++.+. |. +..+++|+.|++++|
T Consensus 230 ~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~~-~~-~~~l~~L~~L~L~~N 304 (310)
T 4glp_A 230 DLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNRA-PQ-PDELPEVDNLTLDGN 304 (310)
T ss_dssp ECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCCSC-CC-TTSCCCCSCEECSST
T ss_pred ECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCCCC-ch-hhhCCCccEEECcCC
Confidence 888888887767666665 58888888888886 5566553 6888888888888764 33 567788888888888
Q ss_pred CCcc
Q 047332 602 NLLG 605 (614)
Q Consensus 602 ~l~~ 605 (614)
+++.
T Consensus 305 ~l~~ 308 (310)
T 4glp_A 305 PFLV 308 (310)
T ss_dssp TTSC
T ss_pred CCCC
Confidence 8764
No 92
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.86 E-value=2.2e-21 Score=184.18 Aligned_cols=197 Identities=18% Similarity=0.155 Sum_probs=126.1
Q ss_pred CCcEEEccCCcCCcccccccCCCCCCCEEECcCcc-cccccCccccCCCCCcEEEccc-CcccccCCccCCCCCCCCEEe
Q 047332 400 SVERVLLNQNNLSGKVYEAFGDHPNLTFLNLSQNN-FCGEISFNWRNFPKLGTFIVSV-NNISGSIPPEIGDSPKLQVLD 477 (614)
Q Consensus 400 ~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~~~~L~~L~l~~-~~~~~~~~~~~~~~~~L~~L~ 477 (614)
++++|++++|++++..+..+..+++|++|++++|. +.+..+..|.++++|+.|++++ |.+++..+..+..+++|++|+
T Consensus 32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~ 111 (239)
T 2xwt_C 32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLG 111 (239)
T ss_dssp TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEE
T ss_pred cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEe
Confidence 45555555555554444455555555555555554 4444444555566666666665 555544445556666666666
Q ss_pred CCCCcCccccchhccCCCCCC---EeeccCC-ccccCccccccCCCCCC-EEeCCCCcCcccCCccccccCCCCEEeCCC
Q 047332 478 LSSNSIVGEIPVQLGKLFSLN---KLILNLN-QLSGGMPLELGSLTELQ-YLDLSANKLKSSIPKSIGNLLRLRYLDLSN 552 (614)
Q Consensus 478 l~~~~~~~~~~~~~~~~~~L~---~L~l~~n-~~~~~~~~~~~~l~~L~-~L~ls~n~l~~~~~~~l~~l~~L~~L~l~~ 552 (614)
+++|.+.+ +|. +..+++|+ +|++++| .+.+..+..|.++++|+ .|++++|.+....+..+.. ++|+.|++++
T Consensus 112 l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~~-~~L~~L~L~~ 188 (239)
T 2xwt_C 112 IFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNG-TKLDAVYLNK 188 (239)
T ss_dssp EEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECTTTTTT-CEEEEEECTT
T ss_pred CCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCHhhcCC-CCCCEEEcCC
Confidence 66666653 444 66666666 7777777 77755556677778888 8888888877433334444 7788888888
Q ss_pred Cc-CCcCCChhhhcC-CCCCeeeCCCCCCCCCCCccccCCCCCCeEECcCCC
Q 047332 553 NQ-FGHKIPIELEKL-IHLSELDLSYNFLGEEIPFQICNVKSLEKLNLCHNN 602 (614)
Q Consensus 553 n~-~~~~~p~~l~~l-~~L~~L~L~~n~~~~~~p~~l~~l~sL~~L~l~~n~ 602 (614)
|+ +++..+..|.++ ++|+.|++++|++.+..+. .+++|+.|++++|.
T Consensus 189 n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l~~~---~~~~L~~L~l~~~~ 237 (239)
T 2xwt_C 189 NKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSK---GLEHLKELIARNTW 237 (239)
T ss_dssp CTTCCEECTTTTTTCSBCCSEEECTTCCCCCCCCT---TCTTCSEEECTTC-
T ss_pred CCCcccCCHHHhhccccCCcEEECCCCccccCChh---HhccCceeeccCcc
Confidence 84 766666777777 8888888888888654332 56778888887764
No 93
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.85 E-value=1.1e-20 Score=186.24 Aligned_cols=195 Identities=25% Similarity=0.350 Sum_probs=113.4
Q ss_pred cccCCCCCcEEECCCCCCCccCcccccCCCCCCEEeCCCCCCCCCCCcCCCCCCCCCEEEcccccCCCCCCccccCCCCC
Q 047332 82 AFSSFPHLVQLNLSFNIFFGIIPPQIGNLSKLQYLDLGSNQLSGVIPPEIGHLNQLRILYFDVNQLHGSIPPEIGQLSLI 161 (614)
Q Consensus 82 ~~~~l~~L~~L~Ls~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L 161 (614)
.+..+++|++|+++++.+... + .+..+++|++|++++|.+++. +. +..+++|++|++++|.+.+ + ..+..+++|
T Consensus 36 ~~~~l~~L~~L~l~~~~i~~l-~-~~~~l~~L~~L~L~~n~i~~~-~~-~~~l~~L~~L~L~~n~l~~-~-~~~~~l~~L 109 (308)
T 1h6u_A 36 TQADLDGITTLSAFGTGVTTI-E-GVQYLNNLIGLELKDNQITDL-AP-LKNLTKITELELSGNPLKN-V-SAIAGLQSI 109 (308)
T ss_dssp CHHHHHTCCEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCCC-GG-GTTCCSCCEEECCSCCCSC-C-GGGTTCTTC
T ss_pred cHHHcCCcCEEEeeCCCccCc-h-hhhccCCCCEEEccCCcCCCC-hh-HccCCCCCEEEccCCcCCC-c-hhhcCCCCC
Confidence 344567777777777776652 3 467777777777777777743 33 7777777777777777663 3 356677777
Q ss_pred cEEEeccccCCCCCCcccCCCCCCcEEEeecCCCcccCCccccCCCCCCeeeccCccCCccCCccccCCCCCCeEEcccC
Q 047332 162 NVLALCHNNLYGSIPSSLGNLSNLANFYFNNNSLFDSIPLVLGNLNSLSTMDLSQNQFSGSIPLSLGNLSNLGILYLYSN 241 (614)
Q Consensus 162 ~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~ 241 (614)
++|++++|.+++. + .+..+++|++|++++|.+.+..+ +..+++|+.|++++|.+++. +. +..+++|++|++++|
T Consensus 110 ~~L~l~~n~l~~~-~-~l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~-~~-l~~l~~L~~L~l~~n 183 (308)
T 1h6u_A 110 KTLDLTSTQITDV-T-PLAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSDL-TP-LANLSKLTTLKADDN 183 (308)
T ss_dssp CEEECTTSCCCCC-G-GGTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCC-GG-GTTCTTCCEEECCSS
T ss_pred CEEECCCCCCCCc-h-hhcCCCCCCEEECCCCccCcCcc--ccCCCCccEEEccCCcCCCC-hh-hcCCCCCCEEECCCC
Confidence 7777777776643 2 25666666666666666654322 55556666666666655532 22 455555555555555
Q ss_pred ccccccchhccCCCCCCEEeccCCcCccccCccccCCCCCCEEecCCCccc
Q 047332 242 SFSGSIPSIIGNLKSLLQLDLSENQLIGSIPLSFGNLSRLTLMSLFNNLLS 292 (614)
Q Consensus 242 ~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~~~~~ 292 (614)
.+++. +. +..+++|++|++++|.+.+.. .+..+++|+.|++++|.++
T Consensus 184 ~l~~~-~~-l~~l~~L~~L~L~~N~l~~~~--~l~~l~~L~~L~l~~N~i~ 230 (308)
T 1h6u_A 184 KISDI-SP-LASLPNLIEVHLKNNQISDVS--PLANTSNLFIVTLTNQTIT 230 (308)
T ss_dssp CCCCC-GG-GGGCTTCCEEECTTSCCCBCG--GGTTCTTCCEEEEEEEEEE
T ss_pred ccCcC-hh-hcCCCCCCEEEccCCccCccc--cccCCCCCCEEEccCCeee
Confidence 55432 21 444555555555555544322 1444444455554444443
No 94
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.85 E-value=9.2e-21 Score=186.87 Aligned_cols=195 Identities=23% Similarity=0.279 Sum_probs=155.5
Q ss_pred ccCCCCCCEEECcCCCCCCCCCccccCCCCCcEEEccCCcCCcccccccCCCCCCCEEECcCcccccccCccccCCCCCc
Q 047332 371 IGNLTGLLLLNMCENHLSGPIPKSFKNLTSVERVLLNQNNLSGKVYEAFGDHPNLTFLNLSQNNFCGEISFNWRNFPKLG 450 (614)
Q Consensus 371 ~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~ 450 (614)
...+++|+.|++++|.++.. + .+..+++|+.|++++|.+.+..+ +..+++|++|++++|.+.+. ..+..+++|+
T Consensus 37 ~~~l~~L~~L~l~~~~i~~l-~-~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l~~~--~~~~~l~~L~ 110 (308)
T 1h6u_A 37 QADLDGITTLSAFGTGVTTI-E-GVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKNV--SAIAGLQSIK 110 (308)
T ss_dssp HHHHHTCCEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSCC--GGGTTCTTCC
T ss_pred HHHcCCcCEEEeeCCCccCc-h-hhhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcCCCc--hhhcCCCCCC
Confidence 34567899999999988753 3 57889999999999998886554 88899999999999988754 3577888899
Q ss_pred EEEcccCcccccCCccCCCCCCCCEEeCCCCcCccccchhccCCCCCCEeeccCCccccCccccccCCCCCCEEeCCCCc
Q 047332 451 TFIVSVNNISGSIPPEIGDSPKLQVLDLSSNSIVGEIPVQLGKLFSLNKLILNLNQLSGGMPLELGSLTELQYLDLSANK 530 (614)
Q Consensus 451 ~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~ls~n~ 530 (614)
.|++++|.+++. + .+..+++|++|++++|.+.+..+ +..+++|+.|++++|.+++..+ +..+++|+.|++++|.
T Consensus 111 ~L~l~~n~l~~~-~-~l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~ 184 (308)
T 1h6u_A 111 TLDLTSTQITDV-T-PLAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSDLTP--LANLSKLTTLKADDNK 184 (308)
T ss_dssp EEECTTSCCCCC-G-GGTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSC
T ss_pred EEECCCCCCCCc-h-hhcCCCCCCEEECCCCccCcCcc--ccCCCCccEEEccCCcCCCChh--hcCCCCCCEEECCCCc
Confidence 999999888753 3 37788889999999888875433 7788888888888888885433 7888888888888888
Q ss_pred CcccCCccccccCCCCEEeCCCCcCCcCCChhhhcCCCCCeeeCCCCCCCC
Q 047332 531 LKSSIPKSIGNLLRLRYLDLSNNQFGHKIPIELEKLIHLSELDLSYNFLGE 581 (614)
Q Consensus 531 l~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~L~~n~~~~ 581 (614)
+.+..+ +..+++|+.|++++|++++..+ +..+++|+.|++++|++.+
T Consensus 185 l~~~~~--l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~l~~N~i~~ 231 (308)
T 1h6u_A 185 ISDISP--LASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLTNQTITN 231 (308)
T ss_dssp CCCCGG--GGGCTTCCEEECTTSCCCBCGG--GTTCTTCCEEEEEEEEEEC
T ss_pred cCcChh--hcCCCCCCEEEccCCccCcccc--ccCCCCCCEEEccCCeeec
Confidence 875433 7888888888888888876543 7888888888888888865
No 95
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.85 E-value=1.3e-20 Score=174.65 Aligned_cols=185 Identities=22% Similarity=0.265 Sum_probs=145.4
Q ss_pred CccccceeeCCCCCEEEEEcCCCCCCcccCcccccCCCCCcEEECCCCCCCccCcccccCCCCCCEEeCCCCCCCCCCCc
Q 047332 50 PCAWLGISCNQAGRVISINLSSMALNGTLQEFAFSSFPHLVQLNLSFNIFFGIIPPQIGNLSKLQYLDLGSNQLSGVIPP 129 (614)
Q Consensus 50 ~c~w~~~~c~~~~~v~~l~l~~~~l~~~~~~~~~~~l~~L~~L~Ls~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~ 129 (614)
.|.|.++.|...+ ++ .++ ....++|++|++++|.+++..+..|..+++|++|++++|.+++..+.
T Consensus 6 ~C~~~~v~c~~~~-----------l~-~~p---~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~ 70 (208)
T 2o6s_A 6 SCSGTTVECYSQG-----------RT-SVP---TGIPAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNG 70 (208)
T ss_dssp EEETTEEECCSSC-----------CS-SCC---SCCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTT
T ss_pred EECCCEEEecCCC-----------cc-CCC---CCCCCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChh
Confidence 4789999997532 11 122 22346899999999999887777788999999999999999866666
Q ss_pred CCCCCCCCCEEEcccccCCCCCCccccCCCCCcEEEeccccCCCCCCcccCCCCCCcEEEeecCCCcccCCccccCCCCC
Q 047332 130 EIGHLNQLRILYFDVNQLHGSIPPEIGQLSLINVLALCHNNLYGSIPSSLGNLSNLANFYFNNNSLFDSIPLVLGNLNSL 209 (614)
Q Consensus 130 ~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L 209 (614)
.|..+++|++|++++|.+++..+..+.++++|++|++++|.+++..+..+..+++|++|++++|.+.+..+..+..+++|
T Consensus 71 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L 150 (208)
T 2o6s_A 71 VFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSL 150 (208)
T ss_dssp TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTC
T ss_pred hcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCc
Confidence 78889999999999999886656667889999999999999887766667888889999998888877666667888888
Q ss_pred CeeeccCccCCccCCccccCCCCCCeEEcccCccccccchhccCCCC
Q 047332 210 STMDLSQNQFSGSIPLSLGNLSNLGILYLYSNSFSGSIPSIIGNLKS 256 (614)
Q Consensus 210 ~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~ 256 (614)
+.|++++|.+.+ .+++|++|+++.|.++|.+|..++.++.
T Consensus 151 ~~L~l~~N~~~~-------~~~~l~~L~~~~n~~~g~ip~~~~~l~~ 190 (208)
T 2o6s_A 151 QYIWLHDNPWDC-------TCPGIRYLSEWINKHSGVVRNSAGSVAP 190 (208)
T ss_dssp CEEECCSCCBCC-------CTTTTHHHHHHHHHCTTTBBCTTSSBCT
T ss_pred cEEEecCCCeec-------CCCCHHHHHHHHHhCCceeeccCccccC
Confidence 888888887653 3457788888888888888877765544
No 96
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.81 E-value=5.2e-19 Score=177.83 Aligned_cols=239 Identities=17% Similarity=0.156 Sum_probs=127.2
Q ss_pred CEeecCCCcccccCCccccCCCCCCEEEccCCcccccCcccccCCCCCcEEEcccccCCccCC-ccccCCCCCCE-EECc
Q 047332 306 SALGLHINQLSGVIPSSIGNLSSLRALYLYNNGLCGFVPEEIRYLKSLSELELCKNHLSGVIP-HSIGNLTGLLL-LNMC 383 (614)
Q Consensus 306 ~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~-~~~~~l~~L~~-L~ls 383 (614)
++++.++++++ .+|..+ .+++++|++++|+++...+..|..+++|++|+|++|.+.+.++ ..|.+++++.. +.+.
T Consensus 12 ~~v~C~~~~Lt-~iP~~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~ 88 (350)
T 4ay9_X 12 RVFLCQESKVT-EIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEK 88 (350)
T ss_dssp TEEEEESTTCC-SCCTTC--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEE
T ss_pred CEEEecCCCCC-ccCcCc--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhccc
Confidence 45666666666 455444 2467777777777776555566677777777777776654433 34556666544 3444
Q ss_pred CCCCCCCCCccccCCCCCcEEEccCCcCCcccccccCCCCCCCEEECcCc-ccccccCccccCCC-CCcEEEcccCcccc
Q 047332 384 ENHLSGPIPKSFKNLTSVERVLLNQNNLSGKVYEAFGDHPNLTFLNLSQN-NFCGEISFNWRNFP-KLGTFIVSVNNISG 461 (614)
Q Consensus 384 ~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~-~~~~~~~~~~~~~~-~L~~L~l~~~~~~~ 461 (614)
.|.++...+..|..+++|+.|++++|++.......+.....+..+++.++ .+....+..+..+. .++.|++++|+++.
T Consensus 89 ~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~ 168 (350)
T 4ay9_X 89 ANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQE 168 (350)
T ss_dssp ETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCE
T ss_pred CCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccC
Confidence 56666555666666666666666666666554444444555556666442 33333333344432 45556666666553
Q ss_pred cCCccCCCCCCCCEEeCCCCcCccccc-hhccCCCCCCEeeccCCccccCccccccCCCCCCEEeCCCCcCcccCCcccc
Q 047332 462 SIPPEIGDSPKLQVLDLSSNSIVGEIP-VQLGKLFSLNKLILNLNQLSGGMPLELGSLTELQYLDLSANKLKSSIPKSIG 540 (614)
Q Consensus 462 ~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~l~ 540 (614)
++.......+|+++++.++...+.+| ..|..+++|++|++++|+++...+.. +.+|+.|.+.++.-...+| .+.
T Consensus 169 -i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~~---~~~L~~L~~l~~~~l~~lP-~l~ 243 (350)
T 4ay9_X 169 -IHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYG---LENLKKLRARSTYNLKKLP-TLE 243 (350)
T ss_dssp -ECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCSSS---CTTCCEEECTTCTTCCCCC-CTT
T ss_pred -CChhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccChhh---hccchHhhhccCCCcCcCC-Cch
Confidence 33333334455566655432222333 34455556666666666555332222 2344444444433333444 245
Q ss_pred ccCCCCEEeCCC
Q 047332 541 NLLRLRYLDLSN 552 (614)
Q Consensus 541 ~l~~L~~L~l~~ 552 (614)
.+++|+.+++.+
T Consensus 244 ~l~~L~~l~l~~ 255 (350)
T 4ay9_X 244 KLVALMEASLTY 255 (350)
T ss_dssp TCCSCCEEECSC
T ss_pred hCcChhhCcCCC
Confidence 555566665543
No 97
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.81 E-value=2.6e-19 Score=165.91 Aligned_cols=172 Identities=22% Similarity=0.183 Sum_probs=103.4
Q ss_pred CCCCEEECcCcccccccCccccCCCCCcEEEcccCcccccCCccCCCCCCCCEEeCCCCcCccccchhccCCCCCCEeec
Q 047332 423 PNLTFLNLSQNNFCGEISFNWRNFPKLGTFIVSVNNISGSIPPEIGDSPKLQVLDLSSNSIVGEIPVQLGKLFSLNKLIL 502 (614)
Q Consensus 423 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l 502 (614)
+++++|++++|.+.+..+..+..+++|++|++++|++++..+..+..+++|++|++++|.+.+..+..+..+++|++|++
T Consensus 28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 107 (208)
T 2o6s_A 28 AQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELAL 107 (208)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEc
Confidence 34555555555555444444455555555555555555443444555666666666666666444445566666777777
Q ss_pred cCCccccCccccccCCCCCCEEeCCCCcCcccCCccccccCCCCEEeCCCCcCCcCCChhhhcCCCCCeeeCCCCCCCCC
Q 047332 503 NLNQLSGGMPLELGSLTELQYLDLSANKLKSSIPKSIGNLLRLRYLDLSNNQFGHKIPIELEKLIHLSELDLSYNFLGEE 582 (614)
Q Consensus 503 ~~n~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~L~~n~~~~~ 582 (614)
++|.+++..+..+..+++|++|++++|.+.+..+..+..+++|+.|++++|++.+. ++.|+.|+++.|++.|.
T Consensus 108 ~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~-------~~~l~~L~~~~n~~~g~ 180 (208)
T 2o6s_A 108 NTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCT-------CPGIRYLSEWINKHSGV 180 (208)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCCC-------TTTTHHHHHHHHHCTTT
T ss_pred CCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCeecC-------CCCHHHHHHHHHhCCce
Confidence 77766655555566677777777777777655555566677777777777766433 34567777777777777
Q ss_pred CCccccCCCCCCeEECcCCCCcc
Q 047332 583 IPFQICNVKSLEKLNLCHNNLLG 605 (614)
Q Consensus 583 ~p~~l~~l~sL~~L~l~~n~l~~ 605 (614)
+|..++.++. ++..|...|
T Consensus 181 ip~~~~~l~~----~~~~C~~~~ 199 (208)
T 2o6s_A 181 VRNSAGSVAP----DSAKCSGSG 199 (208)
T ss_dssp BBCTTSSBCT----TCSBBTTTC
T ss_pred eeccCccccC----CccccccCC
Confidence 7766665544 444454433
No 98
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.81 E-value=9.4e-20 Score=192.62 Aligned_cols=196 Identities=26% Similarity=0.355 Sum_probs=142.1
Q ss_pred cccce-eeCCCCCEEEEEcCCCCCCcccCcccccCCCCCcEEECCCCCCCccCcccccCCCCCCEEeCCCCCCCCCCCcC
Q 047332 52 AWLGI-SCNQAGRVISINLSSMALNGTLQEFAFSSFPHLVQLNLSFNIFFGIIPPQIGNLSKLQYLDLGSNQLSGVIPPE 130 (614)
Q Consensus 52 ~w~~~-~c~~~~~v~~l~l~~~~l~~~~~~~~~~~l~~L~~L~Ls~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~ 130 (614)
.|.++ .|.. ++++.|+++++.+.+ ++. .+ +++|++|+|++|.++. +| ..+++|++|++++|.+++ +|.
T Consensus 49 ~~~~l~~C~~-~~L~~L~Ls~n~L~~-lp~-~l--~~~L~~L~Ls~N~l~~-ip---~~l~~L~~L~Ls~N~l~~-ip~- 117 (571)
T 3cvr_A 49 AVSLLKECLI-NQFSELQLNRLNLSS-LPD-NL--PPQITVLEITQNALIS-LP---ELPASLEYLDACDNRLST-LPE- 117 (571)
T ss_dssp HHHHHHHHHH-TTCSEEECCSSCCSC-CCS-CC--CTTCSEEECCSSCCSC-CC---CCCTTCCEEECCSSCCSC-CCC-
T ss_pred hhhhcccccc-CCccEEEeCCCCCCc-cCH-hH--cCCCCEEECcCCCCcc-cc---cccCCCCEEEccCCCCCC-cch-
Confidence 68888 6753 478899999998887 555 33 3789999999998874 56 457889999999998886 666
Q ss_pred CCCCCCCCEEEcccccCCCCCCccccCCCCCcEEEeccccCCCCCCcccCCCCCCcEEEeecCCCcccCCccccCCCCCC
Q 047332 131 IGHLNQLRILYFDVNQLHGSIPPEIGQLSLINVLALCHNNLYGSIPSSLGNLSNLANFYFNNNSLFDSIPLVLGNLNSLS 210 (614)
Q Consensus 131 l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~ 210 (614)
+.. +|++|++++|.+++ +|. .+++|++|++++|.+++ +|. .+++|++|++++|.+.+ +|. +. ++|+
T Consensus 118 l~~--~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~~-lp~-l~--~~L~ 183 (571)
T 3cvr_A 118 LPA--SLKHLDVDNNQLTM-LPE---LPALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQLTF-LPE-LP--ESLE 183 (571)
T ss_dssp CCT--TCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC-CC--TTCC
T ss_pred hhc--CCCEEECCCCcCCC-CCC---cCccccEEeCCCCccCc-CCC---cCCCcCEEECCCCCCCC-cch-hh--CCCC
Confidence 654 88999999988885 665 67888888888888875 554 56788888888888776 555 54 7888
Q ss_pred eeeccCccCCccCCccccCCCCC-------CeEEcccCccccccchhccCCCCCCEEeccCCcCccccCccccC
Q 047332 211 TMDLSQNQFSGSIPLSLGNLSNL-------GILYLYSNSFSGSIPSIIGNLKSLLQLDLSENQLIGSIPLSFGN 277 (614)
Q Consensus 211 ~L~l~~~~~~~~~~~~l~~l~~L-------~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~l~~ 277 (614)
.|++++|.++ .+|. +.. +| ++|++++|.++ .+|..+..+++|+.|++++|.+.+..|..+..
T Consensus 184 ~L~Ls~N~L~-~lp~-~~~--~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~~ 252 (571)
T 3cvr_A 184 ALDVSTNLLE-SLPA-VPV--RNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIRESLSQ 252 (571)
T ss_dssp EEECCSSCCS-SCCC-CC----------CCEEEECCSSCCC-CCCGGGGGSCTTEEEECCSSSCCHHHHHHHHH
T ss_pred EEECcCCCCC-chhh-HHH--hhhcccccceEEecCCCcce-ecCHHHhcCCCCCEEEeeCCcCCCcCHHHHHH
Confidence 8888888877 4555 443 55 67777777666 45665666666777777777666665555444
No 99
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.79 E-value=2e-18 Score=162.15 Aligned_cols=159 Identities=23% Similarity=0.289 Sum_probs=124.9
Q ss_pred CCCCccccceeeCCCCCEEEEEcCCCCCCcccCcccccCCCCCcEEECCCCCCCccCcccccCCCCCCEEeCCCCCCCCC
Q 047332 47 KISPCAWLGISCNQAGRVISINLSSMALNGTLQEFAFSSFPHLVQLNLSFNIFFGIIPPQIGNLSKLQYLDLGSNQLSGV 126 (614)
Q Consensus 47 ~~~~c~w~~~~c~~~~~v~~l~l~~~~l~~~~~~~~~~~l~~L~~L~Ls~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~ 126 (614)
+...|.|.++.|...+ + +.+|. .+ .++|++|+|++|.+++..|..|..+++|++|++++|.+...
T Consensus 15 ~~~~Cs~~~v~c~~~~-l-----------~~ip~-~~--~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i 79 (229)
T 3e6j_A 15 SQCSCSGTTVDCRSKR-H-----------ASVPA-GI--PTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGAL 79 (229)
T ss_dssp TTCEEETTEEECTTSC-C-----------SSCCS-CC--CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCC
T ss_pred CCCEEeCCEeEccCCC-c-----------CccCC-CC--CCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCc
Confidence 5678999999996532 1 12232 22 37899999999999988888899999999999999999866
Q ss_pred CCcCCCCCCCCCEEEcccccCCCCCCccccCCCCCcEEEeccccCCCCCCcccCCCCCCcEEEeecCCCcccCCccccCC
Q 047332 127 IPPEIGHLNQLRILYFDVNQLHGSIPPEIGQLSLINVLALCHNNLYGSIPSSLGNLSNLANFYFNNNSLFDSIPLVLGNL 206 (614)
Q Consensus 127 ~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l 206 (614)
.+..|..+++|++|++++|.+++..+..+..+++|++|++++|.++ .+|..+..+++|++|++++|.+.+..+..+..+
T Consensus 80 ~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l 158 (229)
T 3e6j_A 80 PVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRL 158 (229)
T ss_dssp CTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTC
T ss_pred ChhhcccCCCcCEEECCCCcCCccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCCccCHHHHhCC
Confidence 5567788999999999999988666666788889999999988888 667777788888888888888776655667777
Q ss_pred CCCCeeeccCccCCc
Q 047332 207 NSLSTMDLSQNQFSG 221 (614)
Q Consensus 207 ~~L~~L~l~~~~~~~ 221 (614)
++|+.|++++|.+..
T Consensus 159 ~~L~~L~l~~N~~~c 173 (229)
T 3e6j_A 159 SSLTHAYLFGNPWDC 173 (229)
T ss_dssp TTCCEEECTTSCBCT
T ss_pred CCCCEEEeeCCCccC
Confidence 777777777777663
No 100
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.79 E-value=2e-18 Score=173.49 Aligned_cols=240 Identities=23% Similarity=0.217 Sum_probs=183.5
Q ss_pred CEEEccCCcccccCcccccCCCCCcEEEcccccCCccCCccccCCCCCCEEECcCCCCCCCCC-ccccCCCCCcE-EEcc
Q 047332 330 RALYLYNNGLCGFVPEEIRYLKSLSELELCKNHLSGVIPHSIGNLTGLLLLNMCENHLSGPIP-KSFKNLTSVER-VLLN 407 (614)
Q Consensus 330 ~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~-~~~~~~~~L~~-L~l~ 407 (614)
++++.++++++. +|..+ .+++++|+|++|.++...+..|.++++|++|++++|.+.+.++ ..|.+++++.+ +.+.
T Consensus 12 ~~v~C~~~~Lt~-iP~~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~ 88 (350)
T 4ay9_X 12 RVFLCQESKVTE-IPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEK 88 (350)
T ss_dssp TEEEEESTTCCS-CCTTC--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEE
T ss_pred CEEEecCCCCCc-cCcCc--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhccc
Confidence 567888888885 55544 3689999999999997666789999999999999999876544 56888888776 5556
Q ss_pred CCcCCcccccccCCCCCCCEEECcCcccccccCccccCCCCCcEEEcccC-cccccCCccCCCC-CCCCEEeCCCCcCcc
Q 047332 408 QNNLSGKVYEAFGDHPNLTFLNLSQNNFCGEISFNWRNFPKLGTFIVSVN-NISGSIPPEIGDS-PKLQVLDLSSNSIVG 485 (614)
Q Consensus 408 ~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~-~~~~~~~~~~~~~-~~L~~L~l~~~~~~~ 485 (614)
.|++....+..|..+++|++|++++|.+....+..+....++..+++.++ .+....+..+..+ ..++.|++++|+++
T Consensus 89 ~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~- 167 (350)
T 4ay9_X 89 ANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQ- 167 (350)
T ss_dssp ETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCC-
T ss_pred CCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhcccccccc-
Confidence 68898888888999999999999999998777766777778888888764 5554444455554 46888999999988
Q ss_pred ccchhccCCCCCCEeeccC-CccccCccccccCCCCCCEEeCCCCcCcccCCccccccCCCCEEeCCCCcCCcCCChhhh
Q 047332 486 EIPVQLGKLFSLNKLILNL-NQLSGGMPLELGSLTELQYLDLSANKLKSSIPKSIGNLLRLRYLDLSNNQFGHKIPIELE 564 (614)
Q Consensus 486 ~~~~~~~~~~~L~~L~l~~-n~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~l~ 564 (614)
.++.......+|+++++.+ |.++...+..|.++++|++||+++|.++. +|.. .+.+|+.|.+.++.-...+| .+.
T Consensus 168 ~i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~-lp~~--~~~~L~~L~~l~~~~l~~lP-~l~ 243 (350)
T 4ay9_X 168 EIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHS-LPSY--GLENLKKLRARSTYNLKKLP-TLE 243 (350)
T ss_dssp EECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCC-CCSS--SCTTCCEEECTTCTTCCCCC-CTT
T ss_pred CCChhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCc-cChh--hhccchHhhhccCCCcCcCC-Cch
Confidence 5555555667889999975 55664444578889999999999999884 4432 35567777777666556677 478
Q ss_pred cCCCCCeeeCCCC
Q 047332 565 KLIHLSELDLSYN 577 (614)
Q Consensus 565 ~l~~L~~L~L~~n 577 (614)
++++|+.+++.++
T Consensus 244 ~l~~L~~l~l~~~ 256 (350)
T 4ay9_X 244 KLVALMEASLTYP 256 (350)
T ss_dssp TCCSCCEEECSCH
T ss_pred hCcChhhCcCCCC
Confidence 8889999998765
No 101
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.79 E-value=1.4e-18 Score=162.18 Aligned_cols=136 Identities=21% Similarity=0.122 Sum_probs=78.0
Q ss_pred CCCEEeCCCCcCccccc-hhccCCCCCCEeeccCCccccCccccccCCCCCCEEeCCCCcCcccCCccccccCCCCEEeC
Q 047332 472 KLQVLDLSSNSIVGEIP-VQLGKLFSLNKLILNLNQLSGGMPLELGSLTELQYLDLSANKLKSSIPKSIGNLLRLRYLDL 550 (614)
Q Consensus 472 ~L~~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~l 550 (614)
.+++|++++|.+.+..+ ..+..+++|++|++++|.+++..+..|.++++|++|++++|.+.+..+..|..+++|++|++
T Consensus 33 ~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 112 (220)
T 2v70_A 33 YTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLML 112 (220)
T ss_dssp TCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEEC
T ss_pred CCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEEEC
Confidence 34555555555553322 23455555666666666555544445556666666666666665555555556666666666
Q ss_pred CCCcCCcCCChhhhcCCCCCeeeCCCCCCCCCCCccccCCCCCCeEECcCCCCcccC
Q 047332 551 SNNQFGHKIPIELEKLIHLSELDLSYNFLGEEIPFQICNVKSLEKLNLCHNNLLGSF 607 (614)
Q Consensus 551 ~~n~~~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~sL~~L~l~~n~l~~~i 607 (614)
++|++++..|..|.++++|++|+|++|++.+..|..|..+++|++|++++|++.+..
T Consensus 113 s~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c 169 (220)
T 2v70_A 113 RSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCNC 169 (220)
T ss_dssp TTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEECSG
T ss_pred CCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcCCC
Confidence 666665555555666666666666666665555555566666666666666655443
No 102
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.79 E-value=2.1e-18 Score=182.33 Aligned_cols=187 Identities=22% Similarity=0.277 Sum_probs=147.6
Q ss_pred CCCEEECcCCCCCCCCCccccCCCCCcEEEccCCcCCcccccccCCCCCCCEEECcCcccccccCccccCCCCCcEEEcc
Q 047332 376 GLLLLNMCENHLSGPIPKSFKNLTSVERVLLNQNNLSGKVYEAFGDHPNLTFLNLSQNNFCGEISFNWRNFPKLGTFIVS 455 (614)
Q Consensus 376 ~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~ 455 (614)
+++.|++++|.+++ +|..+ .++|+.|++++|.++. ++ ..+++|++|++++|.+.+ +|. +.. +|+.|+++
T Consensus 60 ~L~~L~Ls~n~L~~-lp~~l--~~~L~~L~Ls~N~l~~-ip---~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~Ls 128 (571)
T 3cvr_A 60 QFSELQLNRLNLSS-LPDNL--PPQITVLEITQNALIS-LP---ELPASLEYLDACDNRLST-LPE-LPA--SLKHLDVD 128 (571)
T ss_dssp TCSEEECCSSCCSC-CCSCC--CTTCSEEECCSSCCSC-CC---CCCTTCCEEECCSSCCSC-CCC-CCT--TCCEEECC
T ss_pred CccEEEeCCCCCCc-cCHhH--cCCCCEEECcCCCCcc-cc---cccCCCCEEEccCCCCCC-cch-hhc--CCCEEECC
Confidence 89999999999987 55544 3789999999999883 44 457899999999999887 555 444 89999999
Q ss_pred cCcccccCCccCCCCCCCCEEeCCCCcCccccchhccCCCCCCEeeccCCccccCccccccCCCCCCEEeCCCCcCcccC
Q 047332 456 VNNISGSIPPEIGDSPKLQVLDLSSNSIVGEIPVQLGKLFSLNKLILNLNQLSGGMPLELGSLTELQYLDLSANKLKSSI 535 (614)
Q Consensus 456 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~ 535 (614)
+|.+++ +|. .+++|+.|++++|.+++ +|. .+++|++|++++|.+++ +|. +. ++|+.|++++|.++ .+
T Consensus 129 ~N~l~~-lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls~N~L~-~l 195 (571)
T 3cvr_A 129 NNQLTM-LPE---LPALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQLTF-LPE-LP--ESLEALDVSTNLLE-SL 195 (571)
T ss_dssp SSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC-CC--TTCCEEECCSSCCS-SC
T ss_pred CCcCCC-CCC---cCccccEEeCCCCccCc-CCC---cCCCcCEEECCCCCCCC-cch-hh--CCCCEEECcCCCCC-ch
Confidence 999886 555 57889999999999885 554 56789999999999886 555 55 88999999999888 56
Q ss_pred CccccccCCC-------CEEeCCCCcCCcCCChhhhcCCCCCeeeCCCCCCCCCCCccccCC
Q 047332 536 PKSIGNLLRL-------RYLDLSNNQFGHKIPIELEKLIHLSELDLSYNFLGEEIPFQICNV 590 (614)
Q Consensus 536 ~~~l~~l~~L-------~~L~l~~n~~~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l 590 (614)
|. +.. +| +.|++++|+++ .+|..+..+++|+.|+|++|++.+.+|..+..+
T Consensus 196 p~-~~~--~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l 253 (571)
T 3cvr_A 196 PA-VPV--RNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIRESLSQQ 253 (571)
T ss_dssp CC-CC----------CCEEEECCSSCCC-CCCGGGGGSCTTEEEECCSSSCCHHHHHHHHHH
T ss_pred hh-HHH--hhhcccccceEEecCCCcce-ecCHHHhcCCCCCEEEeeCCcCCCcCHHHHHHh
Confidence 66 544 66 88999999886 577777778899999999999988888776554
No 103
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.78 E-value=3e-18 Score=159.88 Aligned_cols=134 Identities=22% Similarity=0.220 Sum_probs=71.3
Q ss_pred CCCCEEeCCCCcCccccchhccCCCCCCEeeccCCccccCccccccCCCCCCEEeCCCCcCcccCCccccccCCCCEEeC
Q 047332 471 PKLQVLDLSSNSIVGEIPVQLGKLFSLNKLILNLNQLSGGMPLELGSLTELQYLDLSANKLKSSIPKSIGNLLRLRYLDL 550 (614)
Q Consensus 471 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~l 550 (614)
++++.|++++|.+.+..+..|..+++|++|++++|.+++..|..|.++++|++|++++|.+....+..|..+++|+.|++
T Consensus 32 ~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L 111 (220)
T 2v9t_B 32 ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLL 111 (220)
T ss_dssp TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCccCHhHccCCCCCCEEEC
Confidence 34555555555554433344555555555555555555444555555555555555555555433334455555555555
Q ss_pred CCCcCCcCCChhhhcCCCCCeeeCCCCCCCCCCCccccCCCCCCeEECcCCCCc
Q 047332 551 SNNQFGHKIPIELEKLIHLSELDLSYNFLGEEIPFQICNVKSLEKLNLCHNNLL 604 (614)
Q Consensus 551 ~~n~~~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~sL~~L~l~~n~l~ 604 (614)
++|++++..|..|..+++|++|+|++|++.+..+..|..+++|++|++++|++.
T Consensus 112 ~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 165 (220)
T 2v9t_B 112 NANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFI 165 (220)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEE
T ss_pred CCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcC
Confidence 555555555555555555555555555555555545555555555555555543
No 104
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.77 E-value=7.2e-18 Score=158.42 Aligned_cols=136 Identities=29% Similarity=0.284 Sum_probs=77.8
Q ss_pred CCCCEEeCCCCcCccccchhccCCCCCCEeeccCCccccCccccccCCCCCCEEeCCCCcCcccCCccccccCCCCEEeC
Q 047332 471 PKLQVLDLSSNSIVGEIPVQLGKLFSLNKLILNLNQLSGGMPLELGSLTELQYLDLSANKLKSSIPKSIGNLLRLRYLDL 550 (614)
Q Consensus 471 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~l 550 (614)
++|++|++++|.+.+..+..+..+++|++|++++|.+....+..|..+++|+.|++++|.+++..+..|..+++|+.|++
T Consensus 40 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L 119 (229)
T 3e6j_A 40 TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFM 119 (229)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcCCccChhHhCcchhhCeEec
Confidence 45555555555555544555555555666666666555444444555566666666666665444444555666666666
Q ss_pred CCCcCCcCCChhhhcCCCCCeeeCCCCCCCCCCCccccCCCCCCeEECcCCCCcccC
Q 047332 551 SNNQFGHKIPIELEKLIHLSELDLSYNFLGEEIPFQICNVKSLEKLNLCHNNLLGSF 607 (614)
Q Consensus 551 ~~n~~~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~sL~~L~l~~n~l~~~i 607 (614)
++|+++ .+|..+..+++|++|+|++|++.+..+..|..+++|+.|++++|++.+..
T Consensus 120 s~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c 175 (229)
T 3e6j_A 120 CCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCEC 175 (229)
T ss_dssp CSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCTTB
T ss_pred cCCccc-ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccCCc
Confidence 666654 44555555666666666666665555455555666666666666655443
No 105
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.77 E-value=1.9e-18 Score=168.75 Aligned_cols=171 Identities=28% Similarity=0.430 Sum_probs=91.9
Q ss_pred ccCCCCCcEEECCCCCCCccCcccccCCCCCCEEeCCCCCCCCCCCcCCCCCCCCCEEEcccccCCCCCCccccCCCCCc
Q 047332 83 FSSFPHLVQLNLSFNIFFGIIPPQIGNLSKLQYLDLGSNQLSGVIPPEIGHLNQLRILYFDVNQLHGSIPPEIGQLSLIN 162 (614)
Q Consensus 83 ~~~l~~L~~L~Ls~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~ 162 (614)
+..+++|++|++++|.+... + .+..+++|++|++++|.+++..+ +..+++|++|++++|.+.+ + ..+..+++|+
T Consensus 42 ~~~l~~L~~L~l~~~~i~~~-~-~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~-~-~~l~~l~~L~ 115 (291)
T 1h6t_A 42 QNELNSIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKD-L-SSLKDLKKLK 115 (291)
T ss_dssp HHHHHTCCEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC-G-GGGTTCTTCC
T ss_pred hhhcCcccEEEccCCCcccC-h-hHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCCC-C-hhhccCCCCC
Confidence 44566667777776666543 2 36666677777777766664332 6666666666666666653 2 2366666666
Q ss_pred EEEeccccCCCCCCcccCCCCCCcEEEeecCCCcccCCccccCCCCCCeeeccCccCCccCCccccCCCCCCeEEcccCc
Q 047332 163 VLALCHNNLYGSIPSSLGNLSNLANFYFNNNSLFDSIPLVLGNLNSLSTMDLSQNQFSGSIPLSLGNLSNLGILYLYSNS 242 (614)
Q Consensus 163 ~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~ 242 (614)
+|++++|.+++. ..+..+++|++|++++|.+.+. ..+..+++|+.|++++|.+++..+ +..+++|++|++++|.
T Consensus 116 ~L~L~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~ 189 (291)
T 1h6t_A 116 SLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNH 189 (291)
T ss_dssp EEECTTSCCCCC--GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSC
T ss_pred EEECCCCcCCCC--hhhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh--hcCCCccCEEECCCCc
Confidence 666666666542 2345555555555555555443 334445555555555555443222 4444444444444444
Q ss_pred cccccchhccCCCCCCEEeccCCcC
Q 047332 243 FSGSIPSIIGNLKSLLQLDLSENQL 267 (614)
Q Consensus 243 ~~~~~~~~l~~l~~L~~L~L~~n~~ 267 (614)
+++ ++ .+..+++|+.|++++|.+
T Consensus 190 i~~-l~-~l~~l~~L~~L~l~~n~i 212 (291)
T 1h6t_A 190 ISD-LR-ALAGLKNLDVLELFSQEC 212 (291)
T ss_dssp CCB-CG-GGTTCTTCSEEEEEEEEE
T ss_pred CCC-Ch-hhccCCCCCEEECcCCcc
Confidence 442 22 244444444444444443
No 106
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.76 E-value=5.9e-18 Score=165.17 Aligned_cols=174 Identities=26% Similarity=0.343 Sum_probs=127.4
Q ss_pred ccCCCCCcEEEccCCcCCcccccccCCCCCCCEEECcCcccccccCccccCCCCCcEEEcccCcccccCCccCCCCCCCC
Q 047332 395 FKNLTSVERVLLNQNNLSGKVYEAFGDHPNLTFLNLSQNNFCGEISFNWRNFPKLGTFIVSVNNISGSIPPEIGDSPKLQ 474 (614)
Q Consensus 395 ~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~ 474 (614)
+..+++|+.|++++|.+... ..+..+++|++|++++|.+.+..+ +..+++|+.|++++|.+++ + +.+..+++|+
T Consensus 42 ~~~l~~L~~L~l~~~~i~~~--~~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~-~-~~l~~l~~L~ 115 (291)
T 1h6t_A 42 QNELNSIDQIIANNSDIKSV--QGIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKD-L-SSLKDLKKLK 115 (291)
T ss_dssp HHHHHTCCEEECTTSCCCCC--TTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC-G-GGGTTCTTCC
T ss_pred hhhcCcccEEEccCCCcccC--hhHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCCC-C-hhhccCCCCC
Confidence 34577888888888887644 346678888888888888876544 7778888888888888764 2 3367778888
Q ss_pred EEeCCCCcCccccchhccCCCCCCEeeccCCccccCccccccCCCCCCEEeCCCCcCcccCCccccccCCCCEEeCCCCc
Q 047332 475 VLDLSSNSIVGEIPVQLGKLFSLNKLILNLNQLSGGMPLELGSLTELQYLDLSANKLKSSIPKSIGNLLRLRYLDLSNNQ 554 (614)
Q Consensus 475 ~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~l~~n~ 554 (614)
+|++++|.+.+. ..+..+++|+.|++++|.+++. ..+..+++|+.|++++|.+.+..+ +..+++|+.|++++|.
T Consensus 116 ~L~L~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~ 189 (291)
T 1h6t_A 116 SLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNH 189 (291)
T ss_dssp EEECTTSCCCCC--GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSC
T ss_pred EEECCCCcCCCC--hhhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh--hcCCCccCEEECCCCc
Confidence 888888877643 3567777888888888877754 467777888888888887775433 7777888888888888
Q ss_pred CCcCCChhhhcCCCCCeeeCCCCCCCCC
Q 047332 555 FGHKIPIELEKLIHLSELDLSYNFLGEE 582 (614)
Q Consensus 555 ~~~~~p~~l~~l~~L~~L~L~~n~~~~~ 582 (614)
+++. | .+..+++|+.|++++|++...
T Consensus 190 i~~l-~-~l~~l~~L~~L~l~~n~i~~~ 215 (291)
T 1h6t_A 190 ISDL-R-ALAGLKNLDVLELFSQECLNK 215 (291)
T ss_dssp CCBC-G-GGTTCTTCSEEEEEEEEEECC
T ss_pred CCCC-h-hhccCCCCCEEECcCCcccCC
Confidence 7653 3 377778888888888877553
No 107
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.75 E-value=1.5e-19 Score=198.45 Aligned_cols=230 Identities=24% Similarity=0.260 Sum_probs=130.9
Q ss_pred chHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccceeeCCCCCEEEEEcCCCCCCcccCccccc
Q 047332 5 SSKETFALLKWKRSLQNKNISLLSSWTLHPDNASNVPSYSKSKISPCAWLGISCNQAGRVISINLSSMALNGTLQEFAFS 84 (614)
Q Consensus 5 ~~~~~~~l~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~c~w~~~~c~~~~~v~~l~l~~~~l~~~~~~~~~~ 84 (614)
...++++++++..+...........|. .. ....+.|.+..+.. ++++.+++.++.+... +. .+
T Consensus 130 ~~~~~~~l~~~~~~~~~~~~~~~~~~~--~~-----------~~~~~~~~~~~~s~-~~~~~l~L~~n~~~~~-~~-~~- 192 (727)
T 4b8c_D 130 VDCTKQALMEMADTLTDSKTAKKQQPT--GD-----------STPSGTATNSAVST-PLTPKIELFANGKDEA-NQ-AL- 192 (727)
T ss_dssp --CCCHHHHHHHHHHHHHHTTC----------------------------------------------------------
T ss_pred cccchhhhhhhhhhcccccCcccCCCc--CC-----------CCccccCCCceecC-CccceEEeeCCCCCcc-hh-hH-
Confidence 456889999999887542223344564 21 34556788777754 6899999988887663 22 22
Q ss_pred CCCCCcEEECCCCCCCc---------cCcccccCCCCCCEEeCCCCCCCCCCCcCCCCCCCCCEEEcccccCCCCCCccc
Q 047332 85 SFPHLVQLNLSFNIFFG---------IIPPQIGNLSKLQYLDLGSNQLSGVIPPEIGHLNQLRILYFDVNQLHGSIPPEI 155 (614)
Q Consensus 85 ~l~~L~~L~Ls~~~~~~---------~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~ 155 (614)
|+.++|+.+.+.+ ..+..+..+++|++|+|++|.+. .+|..+..+++|++|+|++|.++ .+|..|
T Consensus 193 ----l~~l~Ls~~~i~~~~~~~n~~~~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~ 266 (727)
T 4b8c_D 193 ----LQHKKLSQYSIDEDDDIENRMVMPKDSKYDDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEI 266 (727)
T ss_dssp ---------------------------------CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGG
T ss_pred ----hhcCccCcccccCccccccceecChhhhccCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhh
Confidence 3334444443332 34677889999999999999998 77877889999999999999998 889999
Q ss_pred cCCCCCcEEEeccccCCCCCCcccCCCCCCcEEEeecCCCcccCCccccCCCCCCeeeccCccCCccCCccccCCCC-CC
Q 047332 156 GQLSLINVLALCHNNLYGSIPSSLGNLSNLANFYFNNNSLFDSIPLVLGNLNSLSTMDLSQNQFSGSIPLSLGNLSN-LG 234 (614)
Q Consensus 156 ~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~-L~ 234 (614)
+++++|++|+|++|.++ .+|..++.+++|++|++++|.+. .+|..|+.+++|+.|++++|.+++..|..+..+.. ..
T Consensus 267 ~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~ 344 (727)
T 4b8c_D 267 KNLSNLRVLDLSHNRLT-SLPAELGSCFQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGL 344 (727)
T ss_dssp GGGTTCCEEECTTSCCS-SCCSSGGGGTTCSEEECCSSCCC-CCCSSTTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHH
T ss_pred hCCCCCCEEeCcCCcCC-ccChhhcCCCCCCEEECCCCCCC-ccChhhhcCCCccEEeCCCCccCCCChHHHhhcchhhh
Confidence 99999999999999998 77888999999999999999885 66778999999999999999998877777654322 23
Q ss_pred eEEcccCccccccchhccCCCCCCEEeccCC
Q 047332 235 ILYLYSNSFSGSIPSIIGNLKSLLQLDLSEN 265 (614)
Q Consensus 235 ~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~n 265 (614)
.+++++|.+++.+|. .|+.|+++.|
T Consensus 345 ~l~l~~N~l~~~~p~------~l~~l~l~~n 369 (727)
T 4b8c_D 345 IFYLRDNRPEIPLPH------ERRFIEINTD 369 (727)
T ss_dssp HHHHHHCCCCCCCCC------C---------
T ss_pred HHhhccCcccCcCcc------ccceeEeecc
Confidence 467888888877765 4556666665
No 108
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.75 E-value=1.4e-17 Score=178.01 Aligned_cols=174 Identities=28% Similarity=0.419 Sum_probs=123.6
Q ss_pred cccCCCCCcEEECCCCCCCccCcccccCCCCCCEEeCCCCCCCCCCCcCCCCCCCCCEEEcccccCCCCCCccccCCCCC
Q 047332 82 AFSSFPHLVQLNLSFNIFFGIIPPQIGNLSKLQYLDLGSNQLSGVIPPEIGHLNQLRILYFDVNQLHGSIPPEIGQLSLI 161 (614)
Q Consensus 82 ~~~~l~~L~~L~Ls~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L 161 (614)
.+..+++|++|++++|.+... + .+..+++|++|+|++|.+.+..+ +..+++|++|+|++|.+.+ ++ .+..+++|
T Consensus 38 ~~~~L~~L~~L~l~~n~i~~l-~-~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~-l~-~l~~l~~L 111 (605)
T 1m9s_A 38 TQNELNSIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIKD-LS-SLKDLKKL 111 (605)
T ss_dssp CHHHHTTCCCCBCTTCCCCCC-T-TGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCC-CT-TSTTCTTC
T ss_pred chhcCCCCCEEECcCCCCCCC-h-HHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCCCCC-Ch-hhccCCCC
Confidence 355677778888888777653 3 47777888888888887775433 7778888888888887763 33 67777788
Q ss_pred cEEEeccccCCCCCCcccCCCCCCcEEEeecCCCcccCCccccCCCCCCeeeccCccCCccCCccccCCCCCCeEEcccC
Q 047332 162 NVLALCHNNLYGSIPSSLGNLSNLANFYFNNNSLFDSIPLVLGNLNSLSTMDLSQNQFSGSIPLSLGNLSNLGILYLYSN 241 (614)
Q Consensus 162 ~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~ 241 (614)
++|+|++|.+.+. ..+..+++|+.|++++|.+.+. ..+..+++|+.|++++|.+.+..+ +..+++|+.|+|++|
T Consensus 112 ~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N 185 (605)
T 1m9s_A 112 KSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKN 185 (605)
T ss_dssp CEEECTTSCCCCC--GGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSS
T ss_pred CEEEecCCCCCCC--ccccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh--hccCCCCCEEECcCC
Confidence 8888888877753 3467777777777777777664 456777777777777777775444 677777777777777
Q ss_pred ccccccchhccCCCCCCEEeccCCcCcc
Q 047332 242 SFSGSIPSIIGNLKSLLQLDLSENQLIG 269 (614)
Q Consensus 242 ~~~~~~~~~l~~l~~L~~L~L~~n~~~~ 269 (614)
.+.+. + .+..+++|+.|++++|.+.+
T Consensus 186 ~i~~l-~-~l~~l~~L~~L~L~~N~l~~ 211 (605)
T 1m9s_A 186 HISDL-R-ALAGLKNLDVLELFSQECLN 211 (605)
T ss_dssp CCCBC-G-GGTTCTTCSEEECCSEEEEC
T ss_pred CCCCC-h-HHccCCCCCEEEccCCcCcC
Confidence 77643 3 46777777777777777654
No 109
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.75 E-value=6.3e-18 Score=154.96 Aligned_cols=154 Identities=20% Similarity=0.237 Sum_probs=105.8
Q ss_pred CCCCCcEEEcccCcccccCCccCCCCCCCCEEeCCCCcCccccchhccCCCCCCEeeccCCccccCccccccCCCCCCEE
Q 047332 445 NFPKLGTFIVSVNNISGSIPPEIGDSPKLQVLDLSSNSIVGEIPVQLGKLFSLNKLILNLNQLSGGMPLELGSLTELQYL 524 (614)
Q Consensus 445 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L 524 (614)
.+++|+.|++++|.+. .++ .+..+++|++|++++|.+. .+..+..+++|++|++++|.+++..+..+..+++|++|
T Consensus 42 ~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~--~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L 117 (197)
T 4ezg_A 42 QMNSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHAT--NYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLL 117 (197)
T ss_dssp HHHTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCS--CCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEE
T ss_pred hcCCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCC--cchhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEE
Confidence 3556666666666665 333 4566677777777777553 22356677777778887777776667777777888888
Q ss_pred eCCCCcCcccCCccccccCCCCEEeCCCCcCCcCCChhhhcCCCCCeeeCCCCCCCCCCCccccCCCCCCeEECcCCCCc
Q 047332 525 DLSANKLKSSIPKSIGNLLRLRYLDLSNNQFGHKIPIELEKLIHLSELDLSYNFLGEEIPFQICNVKSLEKLNLCHNNLL 604 (614)
Q Consensus 525 ~ls~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~sL~~L~l~~n~l~ 604 (614)
++++|.+.+..+..+..+++|++|++++|...+.+| .+..+++|++|++++|++.+. + .+..+++|++|++++|++.
T Consensus 118 ~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n~i~~~-~-~l~~l~~L~~L~l~~N~i~ 194 (197)
T 4ezg_A 118 DISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFDGVHDY-R-GIEDFPKLNQLYAFSQTIG 194 (197)
T ss_dssp ECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTBCCCCC-T-TGGGCSSCCEEEECBC---
T ss_pred EecCCccCcHhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCCCCcCh-H-HhccCCCCCEEEeeCcccC
Confidence 888888777667777778888888888887324444 577788888888888887663 3 4677788888888888765
Q ss_pred c
Q 047332 605 G 605 (614)
Q Consensus 605 ~ 605 (614)
+
T Consensus 195 ~ 195 (197)
T 4ezg_A 195 G 195 (197)
T ss_dssp -
T ss_pred C
Confidence 3
No 110
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.74 E-value=1e-17 Score=169.00 Aligned_cols=175 Identities=25% Similarity=0.234 Sum_probs=103.8
Q ss_pred cEEEccCCcCCcccccccCCCCCCCEEECcCcccccccCcccc-CCCCCcEEEcccCcccccCCccCCCCCCCCEEeCCC
Q 047332 402 ERVLLNQNNLSGKVYEAFGDHPNLTFLNLSQNNFCGEISFNWR-NFPKLGTFIVSVNNISGSIPPEIGDSPKLQVLDLSS 480 (614)
Q Consensus 402 ~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~ 480 (614)
+.++++++.+.. +|..+ .+.++.|++++|.+.+..+..+. .+++|+.|++++|++++..+..|..+++|++|++++
T Consensus 21 ~~l~c~~~~l~~-iP~~~--~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~ 97 (361)
T 2xot_A 21 NILSCSKQQLPN-VPQSL--PSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSS 97 (361)
T ss_dssp TEEECCSSCCSS-CCSSC--CTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CEEEeCCCCcCc-cCccC--CCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCC
Confidence 467777776653 33322 24567777777777665555555 666666666666666655555566666666666666
Q ss_pred CcCccccchhccCCCCCCEeeccCCccccCccccccCCCCCCEEeCCCCcCcccCCccc---cccCCCCEEeCCCCcCCc
Q 047332 481 NSIVGEIPVQLGKLFSLNKLILNLNQLSGGMPLELGSLTELQYLDLSANKLKSSIPKSI---GNLLRLRYLDLSNNQFGH 557 (614)
Q Consensus 481 ~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~l---~~l~~L~~L~l~~n~~~~ 557 (614)
|.+.+..+..|..+++|++|+|++|.+.+..+..|..+++|+.|++++|.+.+..+..| ..+++|+.|+|++|++++
T Consensus 98 N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 177 (361)
T 2xot_A 98 NHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKK 177 (361)
T ss_dssp SCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCC
T ss_pred CcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCc
Confidence 66664444556666666666666666665555566666666666666666664333333 345666666666666655
Q ss_pred CCChhhhcCCC--CCeeeCCCCCC
Q 047332 558 KIPIELEKLIH--LSELDLSYNFL 579 (614)
Q Consensus 558 ~~p~~l~~l~~--L~~L~L~~n~~ 579 (614)
..+..+..++. ++.|+|++|++
T Consensus 178 l~~~~~~~l~~~~l~~l~l~~N~~ 201 (361)
T 2xot_A 178 LPLTDLQKLPAWVKNGLYLHNNPL 201 (361)
T ss_dssp CCHHHHHHSCHHHHTTEECCSSCE
T ss_pred cCHHHhhhccHhhcceEEecCCCc
Confidence 44455555554 35566666655
No 111
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.74 E-value=3.1e-17 Score=152.92 Aligned_cols=153 Identities=24% Similarity=0.224 Sum_probs=109.6
Q ss_pred cEEEccCCcCCcccccccCCCCCCCEEECcCcccccccCccccCCCCCcEEEcccCcccccCCccCCCCCCCCEEeCCCC
Q 047332 402 ERVLLNQNNLSGKVYEAFGDHPNLTFLNLSQNNFCGEISFNWRNFPKLGTFIVSVNNISGSIPPEIGDSPKLQVLDLSSN 481 (614)
Q Consensus 402 ~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~ 481 (614)
+.++++++.++. +|..+ .++++.|++++|.+.+..+..+..+++|+.|++++|.+++..|..|..+++|++|++++|
T Consensus 14 ~~v~c~~~~l~~-iP~~l--~~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N 90 (220)
T 2v9t_B 14 NIVDCRGKGLTE-IPTNL--PETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGN 90 (220)
T ss_dssp TEEECTTSCCSS-CCSSC--CTTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSS
T ss_pred CEEEcCCCCcCc-CCCcc--CcCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCC
Confidence 567777777663 33332 257788888888877666666777777777777777777666777777777777777777
Q ss_pred cCccccchhccCCCCCCEeeccCCccccCccccccCCCCCCEEeCCCCcCcccCCccccccCCCCEEeCCCCcCCc
Q 047332 482 SIVGEIPVQLGKLFSLNKLILNLNQLSGGMPLELGSLTELQYLDLSANKLKSSIPKSIGNLLRLRYLDLSNNQFGH 557 (614)
Q Consensus 482 ~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~ 557 (614)
.+....+..|..+++|++|++++|.+.+..+..|..+++|+.|++++|.+.+..+..|..+++|+.|++++|++..
T Consensus 91 ~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c 166 (220)
T 2v9t_B 91 KITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFIC 166 (220)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEEC
T ss_pred cCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcCC
Confidence 7775445556777777777777777776667777777777777777777776666667777777777777777654
No 112
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.74 E-value=1.5e-17 Score=177.97 Aligned_cols=192 Identities=22% Similarity=0.302 Sum_probs=156.5
Q ss_pred CCcEEECCCCCCCccCcccccCCCCCCEEeCCCCCCCCCCCcCCCCCCCCCEEEcccccCCCCCCccccCCCCCcEEEec
Q 047332 88 HLVQLNLSFNIFFGIIPPQIGNLSKLQYLDLGSNQLSGVIPPEIGHLNQLRILYFDVNQLHGSIPPEIGQLSLINVLALC 167 (614)
Q Consensus 88 ~L~~L~Ls~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~ 167 (614)
.+..+.+..+.+.+.. .+..+++|++|++++|.+.. ++ .+..+++|++|+|++|.+.+..+ +..+++|++|+|+
T Consensus 22 ~l~~l~l~~~~i~~~~--~~~~L~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls 95 (605)
T 1m9s_A 22 ETIKDNLKKKSVTDAV--TQNELNSIDQIIANNSDIKS-VQ-GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLD 95 (605)
T ss_dssp HHHHHHTTCSCTTSEE--CHHHHTTCCCCBCTTCCCCC-CT-TGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECC
T ss_pred HHHHHhccCCCccccc--chhcCCCCCEEECcCCCCCC-Ch-HHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECc
Confidence 4555667777666543 35678999999999999884 44 68899999999999999985433 8899999999999
Q ss_pred cccCCCCCCcccCCCCCCcEEEeecCCCcccCCccccCCCCCCeeeccCccCCccCCccccCCCCCCeEEcccCcccccc
Q 047332 168 HNNLYGSIPSSLGNLSNLANFYFNNNSLFDSIPLVLGNLNSLSTMDLSQNQFSGSIPLSLGNLSNLGILYLYSNSFSGSI 247 (614)
Q Consensus 168 ~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~ 247 (614)
+|.+.+. + .+..+++|+.|++++|.+.+. ..+..+++|+.|++++|.+++. ..+..+++|+.|+|++|.+.+..
T Consensus 96 ~N~l~~l-~-~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~ 169 (605)
T 1m9s_A 96 ENKIKDL-S-SLKDLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIV 169 (605)
T ss_dssp SSCCCCC-T-TSTTCTTCCEEECTTSCCCCC--GGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCG
T ss_pred CCCCCCC-h-hhccCCCCCEEEecCCCCCCC--ccccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCch
Confidence 9998853 3 688899999999999998764 4588889999999999998854 67888899999999999888655
Q ss_pred chhccCCCCCCEEeccCCcCccccCccccCCCCCCEEecCCCcccccC
Q 047332 248 PSIIGNLKSLLQLDLSENQLIGSIPLSFGNLSRLTLMSLFNNLLSGSL 295 (614)
Q Consensus 248 ~~~l~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~ 295 (614)
| +..+++|+.|+|++|.+.+. ..+..+++|+.|++++|.+.+..
T Consensus 170 ~--l~~l~~L~~L~Ls~N~i~~l--~~l~~l~~L~~L~L~~N~l~~~p 213 (605)
T 1m9s_A 170 P--LAGLTKLQNLYLSKNHISDL--RALAGLKNLDVLELFSQECLNKP 213 (605)
T ss_dssp G--GTTCTTCCEEECCSSCCCBC--GGGTTCTTCSEEECCSEEEECCC
T ss_pred h--hccCCCCCEEECcCCCCCCC--hHHccCCCCCEEEccCCcCcCCc
Confidence 5 88889999999999988753 35788889999999998887543
No 113
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.74 E-value=3e-17 Score=153.07 Aligned_cols=156 Identities=21% Similarity=0.204 Sum_probs=113.6
Q ss_pred cEEEccCCcCCcccccccCCCCCCCEEECcCcccccccC-ccccCCCCCcEEEcccCcccccCCccCCCCCCCCEEeCCC
Q 047332 402 ERVLLNQNNLSGKVYEAFGDHPNLTFLNLSQNNFCGEIS-FNWRNFPKLGTFIVSVNNISGSIPPEIGDSPKLQVLDLSS 480 (614)
Q Consensus 402 ~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~ 480 (614)
+.++++++.++. +|..+ .+.+++|++++|.+.+..+ ..+..+++|+.|++++|.+++..+..|..+++|++|++++
T Consensus 14 ~~l~~s~n~l~~-iP~~~--~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~ 90 (220)
T 2v70_A 14 TTVDCSNQKLNK-IPEHI--PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTS 90 (220)
T ss_dssp TEEECCSSCCSS-CCSCC--CTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CEeEeCCCCccc-CccCC--CCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCC
Confidence 578888887764 34332 3456788888888876643 3467777888888888877766666777777788888887
Q ss_pred CcCccccchhccCCCCCCEeeccCCccccCccccccCCCCCCEEeCCCCcCcccCCccccccCCCCEEeCCCCcCCcCCC
Q 047332 481 NSIVGEIPVQLGKLFSLNKLILNLNQLSGGMPLELGSLTELQYLDLSANKLKSSIPKSIGNLLRLRYLDLSNNQFGHKIP 560 (614)
Q Consensus 481 ~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~p 560 (614)
|.+.+..+..+..+++|++|++++|.+++..|..|..+++|++|++++|.+++..|..|..+++|+.|++++|++....+
T Consensus 91 N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~ 170 (220)
T 2v70_A 91 NRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCNCY 170 (220)
T ss_dssp SCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEECSGG
T ss_pred CccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcCCCc
Confidence 77776666667777777777777777777667777777777777777777777767777777777777777777765443
No 114
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.72 E-value=5.9e-17 Score=163.47 Aligned_cols=178 Identities=29% Similarity=0.215 Sum_probs=153.5
Q ss_pred CEEECcCCCCCCCCCccccCCCCCcEEEccCCcCCcccccccC-CCCCCCEEECcCcccccccCccccCCCCCcEEEccc
Q 047332 378 LLLNMCENHLSGPIPKSFKNLTSVERVLLNQNNLSGKVYEAFG-DHPNLTFLNLSQNNFCGEISFNWRNFPKLGTFIVSV 456 (614)
Q Consensus 378 ~~L~ls~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~ 456 (614)
+.++++++.++. +|..+. ..++.|++++|.+++..+..+. .+++|++|++++|.+.+..+..|..+++|+.|++++
T Consensus 21 ~~l~c~~~~l~~-iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~ 97 (361)
T 2xot_A 21 NILSCSKQQLPN-VPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSS 97 (361)
T ss_dssp TEEECCSSCCSS-CCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CEEEeCCCCcCc-cCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCC
Confidence 689999998885 454443 4589999999999988888887 899999999999999988888899999999999999
Q ss_pred CcccccCCccCCCCCCCCEEeCCCCcCccccchhccCCCCCCEeeccCCccccCccccc---cCCCCCCEEeCCCCcCcc
Q 047332 457 NNISGSIPPEIGDSPKLQVLDLSSNSIVGEIPVQLGKLFSLNKLILNLNQLSGGMPLEL---GSLTELQYLDLSANKLKS 533 (614)
Q Consensus 457 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~---~~l~~L~~L~ls~n~l~~ 533 (614)
|+++...+..|..+++|++|++++|.+.+..+..|..+++|+.|+|++|.+++..+..| ..+++|+.|++++|.+.+
T Consensus 98 N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 177 (361)
T 2xot_A 98 NHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKK 177 (361)
T ss_dssp SCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCC
T ss_pred CcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCc
Confidence 99998777788999999999999999997778899999999999999999997555555 578999999999999996
Q ss_pred cCCccccccCC--CCEEeCCCCcCCcC
Q 047332 534 SIPKSIGNLLR--LRYLDLSNNQFGHK 558 (614)
Q Consensus 534 ~~~~~l~~l~~--L~~L~l~~n~~~~~ 558 (614)
..+..+..++. ++.|++++|++...
T Consensus 178 l~~~~~~~l~~~~l~~l~l~~N~~~C~ 204 (361)
T 2xot_A 178 LPLTDLQKLPAWVKNGLYLHNNPLECD 204 (361)
T ss_dssp CCHHHHHHSCHHHHTTEECCSSCEECC
T ss_pred cCHHHhhhccHhhcceEEecCCCccCC
Confidence 66677888876 48999999998643
No 115
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.72 E-value=3.8e-17 Score=149.72 Aligned_cols=152 Identities=16% Similarity=0.227 Sum_probs=97.5
Q ss_pred CCCCCEEECcCcccccccCccccCCCCCcEEEcccCcccccCCccCCCCCCCCEEeCCCCcCccccchhccCCCCCCEee
Q 047332 422 HPNLTFLNLSQNNFCGEISFNWRNFPKLGTFIVSVNNISGSIPPEIGDSPKLQVLDLSSNSIVGEIPVQLGKLFSLNKLI 501 (614)
Q Consensus 422 ~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ 501 (614)
+++|++|++++|.+. .++ .+..+++|+.|++++|.++ .+..+..+++|++|++++|.+.+..+..+..+++|++|+
T Consensus 43 l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~--~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ 118 (197)
T 4ezg_A 43 MNSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHAT--NYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLD 118 (197)
T ss_dssp HHTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCS--CCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEE
T ss_pred cCCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCC--cchhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEE
Confidence 344555555555544 222 3445555555555555433 223456667777777777777665666677777777777
Q ss_pred ccCCccccCccccccCCCCCCEEeCCCCc-CcccCCccccccCCCCEEeCCCCcCCcCCChhhhcCCCCCeeeCCCCCCC
Q 047332 502 LNLNQLSGGMPLELGSLTELQYLDLSANK-LKSSIPKSIGNLLRLRYLDLSNNQFGHKIPIELEKLIHLSELDLSYNFLG 580 (614)
Q Consensus 502 l~~n~~~~~~~~~~~~l~~L~~L~ls~n~-l~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~L~~n~~~ 580 (614)
+++|.+++..+..+..+++|++|++++|. +. .+| .+..+++|+.|++++|++++. + .+..+++|++|++++|++.
T Consensus 119 Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~-~~~-~l~~l~~L~~L~l~~n~i~~~-~-~l~~l~~L~~L~l~~N~i~ 194 (197)
T 4ezg_A 119 ISHSAHDDSILTKINTLPKVNSIDLSYNGAIT-DIM-PLKTLPELKSLNIQFDGVHDY-R-GIEDFPKLNQLYAFSQTIG 194 (197)
T ss_dssp CCSSBCBGGGHHHHTTCSSCCEEECCSCTBCC-CCG-GGGGCSSCCEEECTTBCCCCC-T-TGGGCSSCCEEEECBC---
T ss_pred ecCCccCcHhHHHHhhCCCCCEEEccCCCCcc-ccH-hhcCCCCCCEEECCCCCCcCh-H-HhccCCCCCEEEeeCcccC
Confidence 77777776666777777777788887776 44 444 577778888888888887653 3 5777788888888888764
Q ss_pred C
Q 047332 581 E 581 (614)
Q Consensus 581 ~ 581 (614)
+
T Consensus 195 ~ 195 (197)
T 4ezg_A 195 G 195 (197)
T ss_dssp -
T ss_pred C
Confidence 3
No 116
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.70 E-value=1.4e-17 Score=165.87 Aligned_cols=287 Identities=13% Similarity=0.021 Sum_probs=188.4
Q ss_pred CCCCCEeecCCCcccccCCccccC-CCCCCEEEccCCccc--ccCcccccCCCCCcEEEcccccCCccCCccccC-----
Q 047332 302 LKSLSALGLHINQLSGVIPSSIGN-LSSLRALYLYNNGLC--GFVPEEIRYLKSLSELELCKNHLSGVIPHSIGN----- 373 (614)
Q Consensus 302 l~~L~~L~L~~n~l~~~~~~~l~~-~~~L~~L~l~~n~~~--~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~----- 373 (614)
+++++.|.++++- .......+.. +++|+.|+|++|++. ..... .++.++.+.+..+.+ .+.+|.+
T Consensus 24 ~~~l~~L~l~g~i-~~~~~~~l~~~l~~L~~LdLs~n~i~~~~~~~~---~~~~~~~~~~~~~~I---~~~aF~~~~~~~ 96 (329)
T 3sb4_A 24 ANSITHLTLTGKL-NAEDFRHLRDEFPSLKVLDISNAEIKMYSGKAG---TYPNGKFYIYMANFV---PAYAFSNVVNGV 96 (329)
T ss_dssp HHHCSEEEEEEEE-CHHHHHHHHHSCTTCCEEEEEEEEECCEEESSS---SSGGGCCEEECTTEE---CTTTTEEEETTE
T ss_pred hCceeEEEEeccc-cHHHHHHHHHhhccCeEEecCcceeEEecCccc---ccccccccccccccc---CHHHhccccccc
Confidence 4567777776531 1111122223 677888888888776 22211 122234444444432 2345556
Q ss_pred ---CCCCCEEECcCCCCCCCCCccccCCCCCcEEEccCCcCCcccccccCCCCCCCEEECcCccc----ccccCccccCC
Q 047332 374 ---LTGLLLLNMCENHLSGPIPKSFKNLTSVERVLLNQNNLSGKVYEAFGDHPNLTFLNLSQNNF----CGEISFNWRNF 446 (614)
Q Consensus 374 ---l~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~~----~~~~~~~~~~~ 446 (614)
+++|+.+++.+ .++.+...+|.+|++|+.+++.+|.+......+|.++..+..+....... .......|..+
T Consensus 97 ~~g~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~ 175 (329)
T 3sb4_A 97 TKGKQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEG 175 (329)
T ss_dssp EEECTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEES
T ss_pred ccccCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhccccccccccccc
Confidence 78888888877 66666667788888888888888877777777777777777766655322 11223345556
Q ss_pred CCCc-EEEcccCccc-ccCCccCCCCCCCCEEeCCCCcCccccchhccCCCCCCEeeccCCccccCccccccCCCCCCEE
Q 047332 447 PKLG-TFIVSVNNIS-GSIPPEIGDSPKLQVLDLSSNSIVGEIPVQLGKLFSLNKLILNLNQLSGGMPLELGSLTELQYL 524 (614)
Q Consensus 447 ~~L~-~L~l~~~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L 524 (614)
..|+ .+.+...... ..+...-....+++.+.+.++-...........+++|+++++++|.++...+.+|.+|++|+.+
T Consensus 176 ~~L~~~i~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l 255 (329)
T 3sb4_A 176 EPLETTIQVGAMGKLEDEIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKI 255 (329)
T ss_dssp CCCEEEEEECTTCCHHHHHHHTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEE
T ss_pred cccceeEEecCCCcHHHHHhhcccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEE
Confidence 6665 3444332111 0010111123445556555442221111122347899999999999987777889999999999
Q ss_pred eCCCCcCcccCCccccccCCCC-EEeCCCCcCCcCCChhhhcCCCCCeeeCCCCCCCCCCCccccCCCCCCeEEC
Q 047332 525 DLSANKLKSSIPKSIGNLLRLR-YLDLSNNQFGHKIPIELEKLIHLSELDLSYNFLGEEIPFQICNVKSLEKLNL 598 (614)
Q Consensus 525 ~ls~n~l~~~~~~~l~~l~~L~-~L~l~~n~~~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~sL~~L~l 598 (614)
++.+| +..+.+..|.++++|+ .+++.+ .++...+.+|.++++|+.+++++|.+....+..|.++++|+.++.
T Consensus 256 ~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~ly~ 328 (329)
T 3sb4_A 256 KLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPSKLIYK 328 (329)
T ss_dssp ECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCCCEEEC
T ss_pred ECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccCccchhhhcCCcchhhhcc
Confidence 99998 7767778899999999 999998 787777899999999999999999998888889999999999864
No 117
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.69 E-value=1.6e-16 Score=144.72 Aligned_cols=130 Identities=29% Similarity=0.311 Sum_probs=78.2
Q ss_pred cEEEcccCcccccCCccCCCCCCCCEEeCCCCcCccccch-hccCCCCCCEeeccCCccccCccccccCCCCCCEEeCCC
Q 047332 450 GTFIVSVNNISGSIPPEIGDSPKLQVLDLSSNSIVGEIPV-QLGKLFSLNKLILNLNQLSGGMPLELGSLTELQYLDLSA 528 (614)
Q Consensus 450 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~ls~ 528 (614)
+.++++++.++ .+|..+. +++++|++++|.+.+..+. .+..+++|++|++++|.+++..|..|.++++|++|++++
T Consensus 11 ~~l~~s~~~l~-~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~ 87 (192)
T 1w8a_A 11 TTVDCTGRGLK-EIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE 87 (192)
T ss_dssp TEEECTTSCCS-SCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred CEEEcCCCCcC-cCccCCC--CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCC
Confidence 45666666664 4444332 2566666666666543332 355666666666666666655566666666666666666
Q ss_pred CcCcccCCccccccCCCCEEeCCCCcCCcCCChhhhcCCCCCeeeCCCCCCCCC
Q 047332 529 NKLKSSIPKSIGNLLRLRYLDLSNNQFGHKIPIELEKLIHLSELDLSYNFLGEE 582 (614)
Q Consensus 529 n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~L~~n~~~~~ 582 (614)
|.+.+..+..|..+++|++|++++|++++..|..+..+++|++|++++|++.+.
T Consensus 88 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~ 141 (192)
T 1w8a_A 88 NKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCN 141 (192)
T ss_dssp CCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCS
T ss_pred CcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCc
Confidence 666655555566666666666666666666666666666666666666666544
No 118
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.68 E-value=7.1e-17 Score=154.93 Aligned_cols=170 Identities=25% Similarity=0.291 Sum_probs=129.5
Q ss_pred CCCCcEEEccCCcCCcccccccCCCCCCCEEECcCcccccccCccccCCCCCcEEEcccCcccccCCccCCCCCCCCEEe
Q 047332 398 LTSVERVLLNQNNLSGKVYEAFGDHPNLTFLNLSQNNFCGEISFNWRNFPKLGTFIVSVNNISGSIPPEIGDSPKLQVLD 477 (614)
Q Consensus 398 ~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ 477 (614)
+.++..+++.++.+++.. .+..+++|+.|++++|.+... + .+..+++|+.|++++|++++..+ +..+++|++|+
T Consensus 18 l~~l~~l~l~~~~i~~~~--~~~~l~~L~~L~l~~n~i~~l-~-~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~ 91 (263)
T 1xeu_A 18 LANAVKQNLGKQSVTDLV--SQKELSGVQNFNGDNSNIQSL-A-GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELS 91 (263)
T ss_dssp HHHHHHHHHTCSCTTSEE--CHHHHTTCSEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEE
T ss_pred HHHHHHHHhcCCCccccc--chhhcCcCcEEECcCCCcccc-h-HHhhCCCCCEEECCCCccCCChh--hccCCCCCEEE
Confidence 455667777888776543 466788899999999888743 3 56778888888888888875443 77888888888
Q ss_pred CCCCcCccccchhccCCCCCCEeeccCCccccCccccccCCCCCCEEeCCCCcCcccCCccccccCCCCEEeCCCCcCCc
Q 047332 478 LSSNSIVGEIPVQLGKLFSLNKLILNLNQLSGGMPLELGSLTELQYLDLSANKLKSSIPKSIGNLLRLRYLDLSNNQFGH 557 (614)
Q Consensus 478 l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~ 557 (614)
+++|++.+ ++.. .. ++|++|++++|.+++. ..+..+++|+.|++++|.+++. + .+..+++|+.|++++|++++
T Consensus 92 L~~N~l~~-l~~~-~~-~~L~~L~L~~N~l~~~--~~l~~l~~L~~L~Ls~N~i~~~-~-~l~~l~~L~~L~L~~N~i~~ 164 (263)
T 1xeu_A 92 VNRNRLKN-LNGI-PS-ACLSRLFLDNNELRDT--DSLIHLKNLEILSIRNNKLKSI-V-MLGFLSKLEVLDLHGNEITN 164 (263)
T ss_dssp CCSSCCSC-CTTC-CC-SSCCEEECCSSCCSBS--GGGTTCTTCCEEECTTSCCCBC-G-GGGGCTTCCEEECTTSCCCB
T ss_pred CCCCccCC-cCcc-cc-CcccEEEccCCccCCC--hhhcCcccccEEECCCCcCCCC-h-HHccCCCCCEEECCCCcCcc
Confidence 88888874 3332 23 7888888888888753 3578888888888888888754 3 67888888888888888876
Q ss_pred CCChhhhcCCCCCeeeCCCCCCCCC
Q 047332 558 KIPIELEKLIHLSELDLSYNFLGEE 582 (614)
Q Consensus 558 ~~p~~l~~l~~L~~L~L~~n~~~~~ 582 (614)
. ..+..+++|+.|++++|++...
T Consensus 165 ~--~~l~~l~~L~~L~l~~N~~~~~ 187 (263)
T 1xeu_A 165 T--GGLTRLKKVNWIDLTGQKCVNE 187 (263)
T ss_dssp C--TTSTTCCCCCEEEEEEEEEECC
T ss_pred h--HHhccCCCCCEEeCCCCcccCC
Confidence 6 5677888888888888888665
No 119
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.67 E-value=6.8e-17 Score=155.07 Aligned_cols=168 Identities=21% Similarity=0.339 Sum_probs=87.3
Q ss_pred CCCCcEEECCCCCCCccCcccccCCCCCCEEeCCCCCCCCCCCcCCCCCCCCCEEEcccccCCCCCCccccCCCCCcEEE
Q 047332 86 FPHLVQLNLSFNIFFGIIPPQIGNLSKLQYLDLGSNQLSGVIPPEIGHLNQLRILYFDVNQLHGSIPPEIGQLSLINVLA 165 (614)
Q Consensus 86 l~~L~~L~Ls~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~ 165 (614)
+.+++.++++++.+++.. .+..+++|++|++++|.++ .++ .+..+++|++|++++|.+.+. +. +.++++|++|+
T Consensus 18 l~~l~~l~l~~~~i~~~~--~~~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~L~~N~i~~~-~~-l~~l~~L~~L~ 91 (263)
T 1xeu_A 18 LANAVKQNLGKQSVTDLV--SQKELSGVQNFNGDNSNIQ-SLA-GMQFFTNLKELHLSHNQISDL-SP-LKDLTKLEELS 91 (263)
T ss_dssp HHHHHHHHHTCSCTTSEE--CHHHHTTCSEEECTTSCCC-CCT-TGGGCTTCCEEECCSSCCCCC-GG-GTTCSSCCEEE
T ss_pred HHHHHHHHhcCCCccccc--chhhcCcCcEEECcCCCcc-cch-HHhhCCCCCEEECCCCccCCC-hh-hccCCCCCEEE
Confidence 344555556666555432 3556666666666666665 333 556666666666666666532 32 66666666666
Q ss_pred eccccCCCCCCcccCCCCCCcEEEeecCCCcccCCccccCCCCCCeeeccCccCCccCCccccCCCCCCeEEcccCcccc
Q 047332 166 LCHNNLYGSIPSSLGNLSNLANFYFNNNSLFDSIPLVLGNLNSLSTMDLSQNQFSGSIPLSLGNLSNLGILYLYSNSFSG 245 (614)
Q Consensus 166 l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~ 245 (614)
+++|.+++. +. +.. ++|++|++++|.+.+. ..+..+++|+.|++++|++++. ..+..+++|++|++++|.+++
T Consensus 92 L~~N~l~~l-~~-~~~-~~L~~L~L~~N~l~~~--~~l~~l~~L~~L~Ls~N~i~~~--~~l~~l~~L~~L~L~~N~i~~ 164 (263)
T 1xeu_A 92 VNRNRLKNL-NG-IPS-ACLSRLFLDNNELRDT--DSLIHLKNLEILSIRNNKLKSI--VMLGFLSKLEVLDLHGNEITN 164 (263)
T ss_dssp CCSSCCSCC-TT-CCC-SSCCEEECCSSCCSBS--GGGTTCTTCCEEECTTSCCCBC--GGGGGCTTCCEEECTTSCCCB
T ss_pred CCCCccCCc-Cc-ccc-CcccEEEccCCccCCC--hhhcCcccccEEECCCCcCCCC--hHHccCCCCCEEECCCCcCcc
Confidence 666666542 22 112 5555555555555442 2344555555555555555432 134444455555555554443
Q ss_pred ccchhccCCCCCCEEeccCCcCc
Q 047332 246 SIPSIIGNLKSLLQLDLSENQLI 268 (614)
Q Consensus 246 ~~~~~l~~l~~L~~L~L~~n~~~ 268 (614)
. ..+..+++|+.|++++|.+.
T Consensus 165 ~--~~l~~l~~L~~L~l~~N~~~ 185 (263)
T 1xeu_A 165 T--GGLTRLKKVNWIDLTGQKCV 185 (263)
T ss_dssp C--TTSTTCCCCCEEEEEEEEEE
T ss_pred h--HHhccCCCCCEEeCCCCccc
Confidence 3 33444444444444444443
No 120
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.67 E-value=1.8e-16 Score=141.22 Aligned_cols=138 Identities=22% Similarity=0.129 Sum_probs=94.4
Q ss_pred CCCCCEEeCCCCcCc-cccchhccCCCCCCEeeccCCccccCccccccCCCCCCEEeCCCCcCcccCCccccccCCCCEE
Q 047332 470 SPKLQVLDLSSNSIV-GEIPVQLGKLFSLNKLILNLNQLSGGMPLELGSLTELQYLDLSANKLKSSIPKSIGNLLRLRYL 548 (614)
Q Consensus 470 ~~~L~~L~l~~~~~~-~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L 548 (614)
.++|++|++++|.+. +.+|..+..+++|++|++++|.+.+. ..+..+++|++|++++|.+.+.+|..+..+++|+.|
T Consensus 23 ~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 100 (168)
T 2ell_A 23 PAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHL 100 (168)
T ss_dssp TTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEE
T ss_pred cccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEE
Confidence 356677777777765 45666666677777777777777644 566677777777777777776566666667777777
Q ss_pred eCCCCcCCcCC-ChhhhcCCCCCeeeCCCCCCCCCCC---ccccCCCCCCeEECcCCCCcccCCCC
Q 047332 549 DLSNNQFGHKI-PIELEKLIHLSELDLSYNFLGEEIP---FQICNVKSLEKLNLCHNNLLGSFQQK 610 (614)
Q Consensus 549 ~l~~n~~~~~~-p~~l~~l~~L~~L~L~~n~~~~~~p---~~l~~l~sL~~L~l~~n~l~~~ip~~ 610 (614)
++++|.+++.. +..+..+++|++|++++|++.+..+ ..+..+++|++|++++|.+. ++|.+
T Consensus 101 ~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~-~~~~~ 165 (168)
T 2ell_A 101 NLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQ-EAPDS 165 (168)
T ss_dssp ECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSC-BCCSS
T ss_pred eccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChh-hcccc
Confidence 77777775532 2566777777777777777766554 35667777777777777765 45543
No 121
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.67 E-value=8.1e-17 Score=160.40 Aligned_cols=58 Identities=17% Similarity=0.170 Sum_probs=33.5
Q ss_pred CCCCCEEeccCCcCccccCccccCCCCCCEEecCCCcccccCCccCCCCCCCCEeecCC
Q 047332 254 LKSLLQLDLSENQLIGSIPLSFGNLSRLTLMSLFNNLLSGSLPPILGNLKSLSALGLHI 312 (614)
Q Consensus 254 l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~ 312 (614)
+++|++|++.+ .+....+.+|..+++|+.+++.+|.+....+..|..+.++..+....
T Consensus 100 ~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~ 157 (329)
T 3sb4_A 100 KQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGS 157 (329)
T ss_dssp CTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTC
T ss_pred cCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcc
Confidence 66666666666 55545555566666666666666666555555555555555554433
No 122
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.66 E-value=2.9e-19 Score=190.05 Aligned_cols=217 Identities=21% Similarity=0.164 Sum_probs=134.2
Q ss_pred cCCCCCcEEEcccccCCccCCccccCCCCCCEEECcCCCCCCCCCccccCCCCCcEEEccCCcCCcccccccCCCCCCCE
Q 047332 348 RYLKSLSELELCKNHLSGVIPHSIGNLTGLLLLNMCENHLSGPIPKSFKNLTSVERVLLNQNNLSGKVYEAFGDHPNLTF 427 (614)
Q Consensus 348 ~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~ 427 (614)
..++.|+.|++++|.++ .+|..++.+++|+.|++++|......+.. +..+...+..+..+..+++|+.
T Consensus 346 ~~~~~L~~L~Ls~n~L~-~Lp~~i~~l~~L~~L~l~~n~~l~~l~~l-----------l~~~~~~~~~~~~l~~l~~L~~ 413 (567)
T 1dce_A 346 ATDEQLFRCELSVEKST-VLQSELESCKELQELEPENKWCLLTIILL-----------MRALDPLLYEKETLQYFSTLKA 413 (567)
T ss_dssp STTTTSSSCCCCHHHHH-HHHHHHHHHHHHHHHCTTCHHHHHHHHHH-----------HHHHCTGGGHHHHHHHHHHHHH
T ss_pred ccCccceeccCChhhHH-hhHHHHHHHHHHHHhccccchhhhhHHHH-----------HHhcccccCCHHHHHHHHhccc
Confidence 34556666666666665 45555666666666665443210000000 0011123334444555555555
Q ss_pred EE-CcCcccccccCccccCCCCCcEEEcccCcccccCCccCCCCCCCCEEeCCCCcCccccchhccCCCCCCEeeccCCc
Q 047332 428 LN-LSQNNFCGEISFNWRNFPKLGTFIVSVNNISGSIPPEIGDSPKLQVLDLSSNSIVGEIPVQLGKLFSLNKLILNLNQ 506 (614)
Q Consensus 428 L~-l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~ 506 (614)
|+ ++.+.+. .|..+.+.+|.++...+ ..|+.|++++|.+++ +|. ++.+++|+.|++++|.
T Consensus 414 L~~l~~n~~~-----------~L~~l~l~~n~i~~l~~------~~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~ 474 (567)
T 1dce_A 414 VDPMRAAYLD-----------DLRSKFLLENSVLKMEY------ADVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNR 474 (567)
T ss_dssp HCGGGHHHHH-----------HHHHHHHHHHHHHHHHH------TTCSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSC
T ss_pred Ccchhhcccc-----------hhhhhhhhcccccccCc------cCceEEEecCCCCCC-CcC-ccccccCcEeecCccc
Confidence 55 3433321 23333344444442211 247788888888774 555 7778888888888888
Q ss_pred cccCccccccCCCCCCEEeCCCCcCcccCCccccccCCCCEEeCCCCcCCcCC-ChhhhcCCCCCeeeCCCCCCCCCCCc
Q 047332 507 LSGGMPLELGSLTELQYLDLSANKLKSSIPKSIGNLLRLRYLDLSNNQFGHKI-PIELEKLIHLSELDLSYNFLGEEIPF 585 (614)
Q Consensus 507 ~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~-p~~l~~l~~L~~L~L~~n~~~~~~p~ 585 (614)
++ .+|..+..+++|+.|++++|.+++ +| .+..+++|+.|++++|++++.. |..+..+++|+.|+|++|++.+.+|.
T Consensus 475 l~-~lp~~~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~ 551 (567)
T 1dce_A 475 LR-ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGI 551 (567)
T ss_dssp CC-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSC
T ss_pred cc-ccchhhhcCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccH
Confidence 87 667788888888888888888875 56 7788888888888888887776 78888888888888888888776553
Q ss_pred c---ccCCCCCCeEEC
Q 047332 586 Q---ICNVKSLEKLNL 598 (614)
Q Consensus 586 ~---l~~l~sL~~L~l 598 (614)
. +..+++|+.|++
T Consensus 552 ~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 552 QERLAEMLPSVSSILT 567 (567)
T ss_dssp TTHHHHHCTTCSEEEC
T ss_pred HHHHHHHCcccCccCC
Confidence 2 233778887764
No 123
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.66 E-value=5.9e-15 Score=150.77 Aligned_cols=313 Identities=12% Similarity=0.059 Sum_probs=137.9
Q ss_pred cCcccccCCCCCcEEECCCCCCCccCcccccCCCCCCEEeCCCCCCCCCCCcCCCCCCCCCEEEcccccCCCCCCccccC
Q 047332 78 LQEFAFSSFPHLVQLNLSFNIFFGIIPPQIGNLSKLQYLDLGSNQLSGVIPPEIGHLNQLRILYFDVNQLHGSIPPEIGQ 157 (614)
Q Consensus 78 ~~~~~~~~l~~L~~L~Ls~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~ 157 (614)
+...+|.++.+|+.+.+.. .++.+-..+|.+|++|+.+++..+ ++..-..+|.++.+|+.+.+..+ +......+|.+
T Consensus 62 Ig~~AF~~c~~L~~i~lp~-~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~-l~~i~~~aF~~ 138 (394)
T 4fs7_A 62 IGYAAFQGCRKVTEIKIPS-TVREIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLM-LKSIGVEAFKG 138 (394)
T ss_dssp ECTTTTTTCTTEEEEECCT-TCCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTTTTT
T ss_pred hHHHHhhCCCCceEEEeCC-CccCcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCc-eeeecceeeec
Confidence 3444777778888888764 355555567777777887777654 44344456777777777666544 22233344444
Q ss_pred CCCCcEEEeccccCCCCCCcccCCCCCCcEEEeecCCCcccCCccccCCCCCCeeeccCccCCccCCccccCCCCCCeEE
Q 047332 158 LSLINVLALCHNNLYGSIPSSLGNLSNLANFYFNNNSLFDSIPLVLGNLNSLSTMDLSQNQFSGSIPLSLGNLSNLGILY 237 (614)
Q Consensus 158 l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~ 237 (614)
+..++....... .......|..|++|+.+.+..+ +...-...|.++.+|+.+++..+ ++....
T Consensus 139 ~~~~~~~~~~~~--~~i~~~aF~~c~~L~~i~l~~~-~~~I~~~~F~~c~~L~~i~l~~~-~~~I~~------------- 201 (394)
T 4fs7_A 139 CDFKEITIPEGV--TVIGDEAFATCESLEYVSLPDS-METLHNGLFSGCGKLKSIKLPRN-LKIIRD------------- 201 (394)
T ss_dssp CCCSEEECCTTC--CEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCBCCCCTT-CCEECT-------------
T ss_pred ccccccccCccc--cccchhhhcccCCCcEEecCCc-cceeccccccCCCCceEEEcCCC-ceEeCc-------------
Confidence 433322222111 1111233445555555555432 11122223444444444444332 221222
Q ss_pred cccCccccccchhccCCCCCCEEeccCCcCccccCccccCCCCCCEEecCCCcccccCCccCCCCCCCCEeecCCCcccc
Q 047332 238 LYSNSFSGSIPSIIGNLKSLLQLDLSENQLIGSIPLSFGNLSRLTLMSLFNNLLSGSLPPILGNLKSLSALGLHINQLSG 317 (614)
Q Consensus 238 L~~~~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~ 317 (614)
.++.++..|+.+.+..+... +.........|+.+.+.... +......+..+..++.+.+..+...
T Consensus 202 -----------~~F~~~~~L~~i~~~~~~~~--i~~~~~~~~~l~~i~ip~~~-~~i~~~~f~~~~~l~~~~~~~~~~~- 266 (394)
T 4fs7_A 202 -----------YCFAECILLENMEFPNSLYY--LGDFALSKTGVKNIIIPDSF-TELGKSVFYGCTDLESISIQNNKLR- 266 (394)
T ss_dssp -----------TTTTTCTTCCBCCCCTTCCE--ECTTTTTTCCCCEEEECTTC-CEECSSTTTTCSSCCEEEECCTTCE-
T ss_pred -----------hhhccccccceeecCCCceE--eehhhcccCCCceEEECCCc-eecccccccccccceeEEcCCCcce-
Confidence 23334444444443332211 11122223344444443221 1122233444444554444433222
Q ss_pred cCCccccCCCCCCEEEccCCcccccCcccccCCCCCcEEEcccccCCccCCccccCCCCCCEEECcCCCCCCCCCccccC
Q 047332 318 VIPSSIGNLSSLRALYLYNNGLCGFVPEEIRYLKSLSELELCKNHLSGVIPHSIGNLTGLLLLNMCENHLSGPIPKSFKN 397 (614)
Q Consensus 318 ~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~ 397 (614)
.....|..+..++.+......+. ...+..+.+|+.+.+.++ ++.....+|.++.+|+.+++..+ ++.+...+|.+
T Consensus 267 i~~~~F~~~~~l~~~~~~~~~i~---~~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~ 341 (394)
T 4fs7_A 267 IGGSLFYNCSGLKKVIYGSVIVP---EKTFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRG 341 (394)
T ss_dssp ECSCTTTTCTTCCEEEECSSEEC---TTTTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTT
T ss_pred eeccccccccccceeccCceeec---cccccccccccccccccc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccC
Confidence 33334444455554444333211 123444455555554432 33233344444445555544322 32233344555
Q ss_pred CCCCcEEEccCCcCCcccccccCCCCCCCEEECc
Q 047332 398 LTSVERVLLNQNNLSGKVYEAFGDHPNLTFLNLS 431 (614)
Q Consensus 398 ~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~ 431 (614)
|.+|+.+.+..+ +......+|.+|++|+.+++.
T Consensus 342 c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp 374 (394)
T 4fs7_A 342 CTSLSNINFPLS-LRKIGANAFQGCINLKKVELP 374 (394)
T ss_dssp CTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEE
T ss_pred CCCCCEEEECcc-ccEehHHHhhCCCCCCEEEEC
Confidence 555555555433 333334444555555555444
No 124
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.66 E-value=2.6e-19 Score=190.36 Aligned_cols=217 Identities=20% Similarity=0.139 Sum_probs=155.6
Q ss_pred cCCCCCCEEEccCCcccccCcccccCCCCCcEEEcccccCCccCCccccCCCCCCEEECcCCCCCCCCCccccCCCCCcE
Q 047332 324 GNLSSLRALYLYNNGLCGFVPEEIRYLKSLSELELCKNHLSGVIPHSIGNLTGLLLLNMCENHLSGPIPKSFKNLTSVER 403 (614)
Q Consensus 324 ~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~L~~ 403 (614)
..++.|+.|++++|++. .+|..+..+++|++|++++|......+..+. .+...+..|..+..+++|+.
T Consensus 346 ~~~~~L~~L~Ls~n~L~-~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~-----------~~~~~~~~~~~l~~l~~L~~ 413 (567)
T 1dce_A 346 ATDEQLFRCELSVEKST-VLQSELESCKELQELEPENKWCLLTIILLMR-----------ALDPLLYEKETLQYFSTLKA 413 (567)
T ss_dssp STTTTSSSCCCCHHHHH-HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-----------HHCTGGGHHHHHHHHHHHHH
T ss_pred ccCccceeccCChhhHH-hhHHHHHHHHHHHHhccccchhhhhHHHHHH-----------hcccccCCHHHHHHHHhccc
Confidence 56789999999999997 4788899999999999977642111111110 11122345556666666666
Q ss_pred EE-ccCCcCCcccccccCCCCCCCEEECcCcccccccCccccCCCCCcEEEcccCcccccCCccCCCCCCCCEEeCCCCc
Q 047332 404 VL-LNQNNLSGKVYEAFGDHPNLTFLNLSQNNFCGEISFNWRNFPKLGTFIVSVNNISGSIPPEIGDSPKLQVLDLSSNS 482 (614)
Q Consensus 404 L~-l~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 482 (614)
|+ ++.|.+ ..|+.+.+++|.+....+ ..|+.|++++|.+++ +|. +..+++|+.|++++|.
T Consensus 414 L~~l~~n~~-----------~~L~~l~l~~n~i~~l~~------~~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~ 474 (567)
T 1dce_A 414 VDPMRAAYL-----------DDLRSKFLLENSVLKMEY------ADVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNR 474 (567)
T ss_dssp HCGGGHHHH-----------HHHHHHHHHHHHHHHHHH------TTCSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSC
T ss_pred Ccchhhccc-----------chhhhhhhhcccccccCc------cCceEEEecCCCCCC-CcC-ccccccCcEeecCccc
Confidence 66 444432 234444555555543221 236777777777775 555 7778888888888888
Q ss_pred CccccchhccCCCCCCEeeccCCccccCccccccCCCCCCEEeCCCCcCcccC-CccccccCCCCEEeCCCCcCCcCCCh
Q 047332 483 IVGEIPVQLGKLFSLNKLILNLNQLSGGMPLELGSLTELQYLDLSANKLKSSI-PKSIGNLLRLRYLDLSNNQFGHKIPI 561 (614)
Q Consensus 483 ~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~-~~~l~~l~~L~~L~l~~n~~~~~~p~ 561 (614)
++ .+|..++.+++|+.|++++|.+++ +| .+..+++|+.|++++|.+++.. |..+..+++|+.|++++|++++..|.
T Consensus 475 l~-~lp~~~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~ 551 (567)
T 1dce_A 475 LR-ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGI 551 (567)
T ss_dssp CC-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSC
T ss_pred cc-ccchhhhcCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccH
Confidence 88 778888889999999999999886 56 7888999999999999998776 88899999999999999999776553
Q ss_pred ---hhhcCCCCCeeeC
Q 047332 562 ---ELEKLIHLSELDL 574 (614)
Q Consensus 562 ---~l~~l~~L~~L~L 574 (614)
.+..+++|+.|++
T Consensus 552 ~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 552 QERLAEMLPSVSSILT 567 (567)
T ss_dssp TTHHHHHCTTCSEEEC
T ss_pred HHHHHHHCcccCccCC
Confidence 2345788888864
No 125
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.65 E-value=1.8e-14 Score=147.09 Aligned_cols=322 Identities=15% Similarity=0.090 Sum_probs=187.5
Q ss_pred CEEEEEcCCCCCCcccCcccccCCCCCcEEECCCCCCCccCcccccCCCCCCEEeCCCCCCCCCCCcCCCCCCCCCEEEc
Q 047332 63 RVISINLSSMALNGTLQEFAFSSFPHLVQLNLSFNIFFGIIPPQIGNLSKLQYLDLGSNQLSGVIPPEIGHLNQLRILYF 142 (614)
Q Consensus 63 ~v~~l~l~~~~l~~~~~~~~~~~l~~L~~L~Ls~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~l 142 (614)
.++.+.+... + ..+...+|.++++|+.+++..+ ++..-..+|.++++|+.+.+..+ +......+|..+..++....
T Consensus 72 ~L~~i~lp~~-i-~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~-l~~i~~~aF~~~~~~~~~~~ 147 (394)
T 4fs7_A 72 KVTEIKIPST-V-REIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLM-LKSIGVEAFKGCDFKEITIP 147 (394)
T ss_dssp TEEEEECCTT-C-CEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTTTTTCCCSEEECC
T ss_pred CceEEEeCCC-c-cCcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCc-eeeecceeeecccccccccC
Confidence 6788887642 3 2455669999999999999765 55555678999999999888765 44355567777765444433
Q ss_pred ccccCCCCCCccccCCCCCcEEEeccccCCCCCCcccCCCCCCcEEEeecCCCcccCCccccCCCCCCeeeccCccCCcc
Q 047332 143 DVNQLHGSIPPEIGQLSLINVLALCHNNLYGSIPSSLGNLSNLANFYFNNNSLFDSIPLVLGNLNSLSTMDLSQNQFSGS 222 (614)
Q Consensus 143 ~~n~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~ 222 (614)
... ......+|.++++|+.+.+..+ +.......+.++.+|+.+.+..+ +...-...+.++..|+.+.+..+...
T Consensus 148 ~~~--~~i~~~aF~~c~~L~~i~l~~~-~~~I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~~i~~~~~~~~-- 221 (394)
T 4fs7_A 148 EGV--TVIGDEAFATCESLEYVSLPDS-METLHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECILLENMEFPNSLYY-- 221 (394)
T ss_dssp TTC--CEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTCCBCCCCTTCCE--
T ss_pred ccc--cccchhhhcccCCCcEEecCCc-cceeccccccCCCCceEEEcCCC-ceEeCchhhccccccceeecCCCceE--
Confidence 332 2233467899999999999765 33344567888999999998765 44444457888889998887665432
Q ss_pred CCccccCCCCCCeEEcccCccccccchhccCCCCCCEEeccCCcCccccCccccCCCCCCEEecCCCcccccCCccCCCC
Q 047332 223 IPLSLGNLSNLGILYLYSNSFSGSIPSIIGNLKSLLQLDLSENQLIGSIPLSFGNLSRLTLMSLFNNLLSGSLPPILGNL 302 (614)
Q Consensus 223 ~~~~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~l~~l 302 (614)
+........+|+.+.+... .+.....++..+..++.+.+..+.. ......|..+..++.+......+. ...+..+
T Consensus 222 i~~~~~~~~~l~~i~ip~~-~~~i~~~~f~~~~~l~~~~~~~~~~-~i~~~~F~~~~~l~~~~~~~~~i~---~~~F~~~ 296 (394)
T 4fs7_A 222 LGDFALSKTGVKNIIIPDS-FTELGKSVFYGCTDLESISIQNNKL-RIGGSLFYNCSGLKKVIYGSVIVP---EKTFYGC 296 (394)
T ss_dssp ECTTTTTTCCCCEEEECTT-CCEECSSTTTTCSSCCEEEECCTTC-EECSCTTTTCTTCCEEEECSSEEC---TTTTTTC
T ss_pred eehhhcccCCCceEEECCC-ceecccccccccccceeEEcCCCcc-eeeccccccccccceeccCceeec---ccccccc
Confidence 2222333456666666432 2223334455566666666655432 233444555555555554443221 1233444
Q ss_pred CCCCEeecCCCcccccCCccccCCCCCCEEEccCCcccccCcccccCCCCCcEEEcccccCCccCCccccCCCCCCEEEC
Q 047332 303 KSLSALGLHINQLSGVIPSSIGNLSSLRALYLYNNGLCGFVPEEIRYLKSLSELELCKNHLSGVIPHSIGNLTGLLLLNM 382 (614)
Q Consensus 303 ~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l 382 (614)
.+|+.+. +..+ +..+...+|..|.+|+.+++.++ ++.....+|.++.+|+.+++
T Consensus 297 ~~L~~i~------------------------l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~l 350 (394)
T 4fs7_A 297 SSLTEVK------------------------LLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINF 350 (394)
T ss_dssp TTCCEEE------------------------ECTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECC
T ss_pred ccccccc------------------------cccc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEE
Confidence 4444444 4332 33333344445555555555422 33333445555556666655
Q ss_pred cCCCCCCCCCccccCCCCCcEEEccCCcCCcccccccCCCCCCCEE
Q 047332 383 CENHLSGPIPKSFKNLTSVERVLLNQNNLSGKVYEAFGDHPNLTFL 428 (614)
Q Consensus 383 s~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L 428 (614)
..+ ++.+...+|.+|++|+.+++..+ +. ....+|.++++|+.+
T Consensus 351 p~~-l~~I~~~aF~~C~~L~~i~lp~~-~~-~~~~~F~~c~~L~~I 393 (394)
T 4fs7_A 351 PLS-LRKIGANAFQGCINLKKVELPKR-LE-QYRYDFEDTTKFKWI 393 (394)
T ss_dssp CTT-CCEECTTTBTTCTTCCEEEEEGG-GG-GGGGGBCTTCEEEEE
T ss_pred Ccc-ccEehHHHhhCCCCCCEEEECCC-CE-EhhheecCCCCCcEE
Confidence 444 33344456666667776666543 21 122345566655543
No 126
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.64 E-value=2.2e-14 Score=145.82 Aligned_cols=262 Identities=10% Similarity=0.077 Sum_probs=143.7
Q ss_pred CCCCEeecCCCcccccCCccccCCCCCCEEEccCCcccccCcccccCCCCCcEEEcccccCCccCCccccCCCCCCEEEC
Q 047332 303 KSLSALGLHINQLSGVIPSSIGNLSSLRALYLYNNGLCGFVPEEIRYLKSLSELELCKNHLSGVIPHSIGNLTGLLLLNM 382 (614)
Q Consensus 303 ~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l 382 (614)
..++.+.+.. .++.+...+|.++ +|+.+.+..+ +..+...+|..+ +|+.+.+.+ .++...+.+|.++.+|+.+++
T Consensus 113 ~~l~~i~ip~-~i~~I~~~aF~~~-~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l 187 (401)
T 4fdw_A 113 KGYNEIILPN-SVKSIPKDAFRNS-QIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPS-TLEQLKEDIFYYCYNLKKADL 187 (401)
T ss_dssp SSCSEEECCT-TCCEECTTTTTTC-CCSEEECCTT-CCEECTTTTTTC-CCCEEECCT-TCCEECSSTTTTCTTCCEEEC
T ss_pred CCccEEEECC-ccCEehHhhcccC-CccEEEeCCC-ccEECHHhcCCC-CceEEEeCC-CccEehHHHhhCcccCCeeec
Confidence 4455555543 2333444455553 5666666544 444444455543 466666554 344344445555555555555
Q ss_pred cCCCCCCCCCccccCCCCCcEEEccCCcCCcccccccCCCCCCCEEECcCcccccccCccccCCCCCcEEEcccCccccc
Q 047332 383 CENHLSGPIPKSFKNLTSVERVLLNQNNLSGKVYEAFGDHPNLTFLNLSQNNFCGEISFNWRNFPKLGTFIVSVNNISGS 462 (614)
Q Consensus 383 s~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 462 (614)
..|.++......|. +.+|+.+.+..+ +......+|.++++|+.+++.++ +.....
T Consensus 188 ~~n~l~~I~~~aF~-~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~---------------------- 242 (401)
T 4fdw_A 188 SKTKITKLPASTFV-YAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQ---------------------- 242 (401)
T ss_dssp TTSCCSEECTTTTT-TCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CCEECT----------------------
T ss_pred CCCcceEechhhEe-ecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-ccCccc----------------------
Confidence 55555444334443 345555555432 44344444555555555555432 222222
Q ss_pred CCccCCCCCCCCEEeCCCCcCccccchhccCCCCCCEeeccCCccc-----cCccccccCCCCCCEEeCCCCcCcccCCc
Q 047332 463 IPPEIGDSPKLQVLDLSSNSIVGEIPVQLGKLFSLNKLILNLNQLS-----GGMPLELGSLTELQYLDLSANKLKSSIPK 537 (614)
Q Consensus 463 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~-----~~~~~~~~~l~~L~~L~ls~n~l~~~~~~ 537 (614)
.+|.. .+|+.+++.+ .++......|.+|++|+.+++.++.+. ...+.+|.+|++|+.+++.+ .+......
T Consensus 243 --~aF~~-~~L~~i~lp~-~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i~~I~~~ 317 (401)
T 4fdw_A 243 --EAFRE-SGITTVKLPN-GVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE-SIRILGQG 317 (401)
T ss_dssp --TTTTT-CCCSEEEEET-TCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT-TCCEECTT
T ss_pred --ccccc-CCccEEEeCC-CccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC-ceEEEhhh
Confidence 23333 4455555532 233233445566666666666655443 23455677777777777773 46555566
Q ss_pred cccccCCCCEEeCCCCcCCcCCChhhhcCCCCCeeeCCCCCCCCCCCccccCCC-CCCeEECcCC
Q 047332 538 SIGNLLRLRYLDLSNNQFGHKIPIELEKLIHLSELDLSYNFLGEEIPFQICNVK-SLEKLNLCHN 601 (614)
Q Consensus 538 ~l~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~-sL~~L~l~~n 601 (614)
.|.+|++|+.+.+..+ ++...+.+|.++ +|+.+++.+|......+..|..++ .++.|.+..+
T Consensus 318 aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~~ 380 (401)
T 4fdw_A 318 LLGGNRKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVPAE 380 (401)
T ss_dssp TTTTCCSCCEEEECTT-CCEECTTSSSSS-CCCEEEECCSSCCBCCCSSCCCSCTTCCEEEECGG
T ss_pred hhcCCCCccEEEECcc-ccEEcHHhCCCC-CCCEEEEcCCCCcccccccccCCCCCccEEEeCHH
Confidence 7777777777777544 555556677777 777777777777666666666663 5677776654
No 127
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.64 E-value=8e-16 Score=137.02 Aligned_cols=134 Identities=20% Similarity=0.170 Sum_probs=93.3
Q ss_pred CCCCCcEEECCCCCCC-ccCcccccCCCCCCEEeCCCCCCCCCCCcCCCCCCCCCEEEcccccCCCCCCccccCCCCCcE
Q 047332 85 SFPHLVQLNLSFNIFF-GIIPPQIGNLSKLQYLDLGSNQLSGVIPPEIGHLNQLRILYFDVNQLHGSIPPEIGQLSLINV 163 (614)
Q Consensus 85 ~l~~L~~L~Ls~~~~~-~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~ 163 (614)
..++|++|++++|.++ +.+|..+..+++|++|++++|.+++. ..+..+++|++|++++|.+.+.+|..+.++++|++
T Consensus 22 ~~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 99 (168)
T 2ell_A 22 TPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTH 99 (168)
T ss_dssp CTTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCE
T ss_pred CcccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCE
Confidence 3467888888888776 56677777788888888888887754 66777888888888888877656766667778888
Q ss_pred EEeccccCCCCC-CcccCCCCCCcEEEeecCCCcccCC---ccccCCCCCCeeeccCccCC
Q 047332 164 LALCHNNLYGSI-PSSLGNLSNLANFYFNNNSLFDSIP---LVLGNLNSLSTMDLSQNQFS 220 (614)
Q Consensus 164 L~l~~~~l~~~~-~~~l~~l~~L~~L~l~~~~~~~~~~---~~l~~l~~L~~L~l~~~~~~ 220 (614)
|++++|.+++.. +..+..+++|++|++++|.+.+..+ ..+..+++|++|++++|.+.
T Consensus 100 L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~ 160 (168)
T 2ell_A 100 LNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQ 160 (168)
T ss_dssp EECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSC
T ss_pred EeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChh
Confidence 888877776532 2456666667777776666655433 24556666666666666554
No 128
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.63 E-value=3.9e-16 Score=135.97 Aligned_cols=127 Identities=21% Similarity=0.136 Sum_probs=70.1
Q ss_pred CCCCEEeCCCCcCc-cccchhccCCCCCCEeeccCCccccCccccccCCCCCCEEeCCCCcCcccCCccccccCCCCEEe
Q 047332 471 PKLQVLDLSSNSIV-GEIPVQLGKLFSLNKLILNLNQLSGGMPLELGSLTELQYLDLSANKLKSSIPKSIGNLLRLRYLD 549 (614)
Q Consensus 471 ~~L~~L~l~~~~~~-~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~ 549 (614)
++|+.|++++|.+. +.+|..+..+++|++|++++|.+.+. ..+..+++|++|++++|.+.+.+|..+..+++|++|+
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ 94 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLN 94 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEE
T ss_pred ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEE
Confidence 44555555555554 44454555555555555555555533 4455555666666666665544555555556666666
Q ss_pred CCCCcCCcC-CChhhhcCCCCCeeeCCCCCCCCCCC---ccccCCCCCCeEECc
Q 047332 550 LSNNQFGHK-IPIELEKLIHLSELDLSYNFLGEEIP---FQICNVKSLEKLNLC 599 (614)
Q Consensus 550 l~~n~~~~~-~p~~l~~l~~L~~L~L~~n~~~~~~p---~~l~~l~sL~~L~l~ 599 (614)
+++|++++. .+..+..+++|++|++++|++.+..+ ..+..+++|++|+++
T Consensus 95 ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 95 LSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp CTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred CCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence 666665442 23455556666666666666555444 345555666666554
No 129
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.63 E-value=2.6e-15 Score=134.95 Aligned_cols=112 Identities=29% Similarity=0.211 Sum_probs=54.6
Q ss_pred CCCEeeccCCccccCccccccCCCCCCEEeCCCCcCcccCCccccccCCCCEEeCCCCcCCcCCChhhhcCCCCCeeeCC
Q 047332 496 SLNKLILNLNQLSGGMPLELGSLTELQYLDLSANKLKSSIPKSIGNLLRLRYLDLSNNQFGHKIPIELEKLIHLSELDLS 575 (614)
Q Consensus 496 ~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~L~ 575 (614)
+|++|++++|.+.+..+..+..+++|++|++++|.+.+..+..+..+++|+.|++++|.+++..+..+..+++|++|+++
T Consensus 29 ~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~ 108 (177)
T 2o6r_A 29 SATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALD 108 (177)
T ss_dssp TCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEECc
Confidence 44455555554444333344445555555555555544333344455555555555555544444444455555555555
Q ss_pred CCCCCCCCCccccCCCCCCeEECcCCCCcccC
Q 047332 576 YNFLGEEIPFQICNVKSLEKLNLCHNNLLGSF 607 (614)
Q Consensus 576 ~n~~~~~~p~~l~~l~sL~~L~l~~n~l~~~i 607 (614)
+|++.+..+..+..+++|++|++++|++.+.+
T Consensus 109 ~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~ 140 (177)
T 2o6r_A 109 TNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSC 140 (177)
T ss_dssp SSCCSCCCTTTTTTCTTCCEEECCSSCBCCCH
T ss_pred CCcceEeCHHHhcCCcccCEEEecCCCeeccC
Confidence 55554444434444555555555555554443
No 130
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.63 E-value=3.3e-15 Score=135.91 Aligned_cols=108 Identities=27% Similarity=0.302 Sum_probs=55.3
Q ss_pred CCCEeeccCCccccCccccccCCCCCCEEeCCCCcCcccCCccccccCCCCEEeCCCCcCCcCCChhhhcCCCCCeeeCC
Q 047332 496 SLNKLILNLNQLSGGMPLELGSLTELQYLDLSANKLKSSIPKSIGNLLRLRYLDLSNNQFGHKIPIELEKLIHLSELDLS 575 (614)
Q Consensus 496 ~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~L~ 575 (614)
+|++|++++|.++ .+|..|..+++|+.|++++|.+++..+..|..+++|++|++++|++++..|..|.++++|++|+|+
T Consensus 32 ~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~ 110 (193)
T 2wfh_A 32 DVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLH 110 (193)
T ss_dssp TCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECC
T ss_pred CCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEECC
Confidence 4555555555554 334445555555555555555554444445555555555555555554444455555555555555
Q ss_pred CCCCCCCCCccccCCCCCCeEECcCCCCc
Q 047332 576 YNFLGEEIPFQICNVKSLEKLNLCHNNLL 604 (614)
Q Consensus 576 ~n~~~~~~p~~l~~l~sL~~L~l~~n~l~ 604 (614)
+|++.+..+..|..+++|+.|++++|++.
T Consensus 111 ~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 139 (193)
T 2wfh_A 111 GNDISVVPEGAFNDLSALSHLAIGANPLY 139 (193)
T ss_dssp SSCCCBCCTTTTTTCTTCCEEECCSSCEE
T ss_pred CCCCCeeChhhhhcCccccEEEeCCCCee
Confidence 55555444444455555555555555543
No 131
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.62 E-value=6.8e-14 Score=142.12 Aligned_cols=269 Identities=10% Similarity=0.032 Sum_probs=136.5
Q ss_pred CCCCCcEEECCCCCCCccCcccccCCCCCCEEeCCCCCCCCCCCcCCCCCCCCCEEEcccccCCCCCCccccCCCCCcEE
Q 047332 85 SFPHLVQLNLSFNIFFGIIPPQIGNLSKLQYLDLGSNQLSGVIPPEIGHLNQLRILYFDVNQLHGSIPPEIGQLSLINVL 164 (614)
Q Consensus 85 ~l~~L~~L~Ls~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L 164 (614)
.+..++.+.+.. .++.+-..+|.++ +|+.+.+..+ ++..-..+|.++ +|+.+.+.. .+...-+.+|.+|++|+.+
T Consensus 111 ~~~~l~~i~ip~-~i~~I~~~aF~~~-~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L~~l 185 (401)
T 4fdw_A 111 ILKGYNEIILPN-SVKSIPKDAFRNS-QIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPS-TLEQLKEDIFYYCYNLKKA 185 (401)
T ss_dssp ECSSCSEEECCT-TCCEECTTTTTTC-CCSEEECCTT-CCEECTTTTTTC-CCCEEECCT-TCCEECSSTTTTCTTCCEE
T ss_pred ecCCccEEEECC-ccCEehHhhcccC-CccEEEeCCC-ccEECHHhcCCC-CceEEEeCC-CccEehHHHhhCcccCCee
Confidence 345666666654 2444444566664 5777777655 444444556554 577777765 3444444566667777777
Q ss_pred EeccccCCCCCCcccCCCCCCcEEEeecCCCcccCCccccCCCCCCeeeccCccCCccCCccccCCCCCCeEEcccCccc
Q 047332 165 ALCHNNLYGSIPSSLGNLSNLANFYFNNNSLFDSIPLVLGNLNSLSTMDLSQNQFSGSIPLSLGNLSNLGILYLYSNSFS 244 (614)
Q Consensus 165 ~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~ 244 (614)
++.+|.++......|. +.+|+.+.+..+ +...-...|.++++|+.+++..+ ++......|.. .+|+.+.+. +.++
T Consensus 186 ~l~~n~l~~I~~~aF~-~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~lp-~~i~ 260 (401)
T 4fdw_A 186 DLSKTKITKLPASTFV-YAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKLP-NGVT 260 (401)
T ss_dssp ECTTSCCSEECTTTTT-TCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEEEE-TTCC
T ss_pred ecCCCcceEechhhEe-ecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccEEEeC-CCcc
Confidence 7766666543333333 466666666533 43333445566666666666543 33233334444 455555553 2233
Q ss_pred cccchhccCCCCCCEEeccCCcCccccCccccCCCCCCEEecCCCcccccCCccCCCCCCCCEeecCCCcccccCCcccc
Q 047332 245 GSIPSIIGNLKSLLQLDLSENQLIGSIPLSFGNLSRLTLMSLFNNLLSGSLPPILGNLKSLSALGLHINQLSGVIPSSIG 324 (614)
Q Consensus 245 ~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~ 324 (614)
.....+|.++++|+.+++.++.... +.........|..|++|+.+.+.. .++.....+|.
T Consensus 261 ~I~~~aF~~c~~L~~l~l~~~~~~~-------------------~~~~~I~~~aF~~c~~L~~l~l~~-~i~~I~~~aF~ 320 (401)
T 4fdw_A 261 NIASRAFYYCPELAEVTTYGSTFND-------------------DPEAMIHPYCLEGCPKLARFEIPE-SIRILGQGLLG 320 (401)
T ss_dssp EECTTTTTTCTTCCEEEEESSCCCC-------------------CTTCEECTTTTTTCTTCCEECCCT-TCCEECTTTTT
T ss_pred EEChhHhhCCCCCCEEEeCCccccC-------------------CcccEECHHHhhCCccCCeEEeCC-ceEEEhhhhhc
Confidence 2333445555555555555443320 000012233455555555555542 34434444555
Q ss_pred CCCCCCEEEccCCcccccCcccccCCCCCcEEEcccccCCccCCccccCCC-CCCEEECcCC
Q 047332 325 NLSSLRALYLYNNGLCGFVPEEIRYLKSLSELELCKNHLSGVIPHSIGNLT-GLLLLNMCEN 385 (614)
Q Consensus 325 ~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~-~L~~L~ls~n 385 (614)
++++|+.+.+..+ +..+...+|..+ +|+.+++.+|......+..|.+++ +++.+.+..+
T Consensus 321 ~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~~ 380 (401)
T 4fdw_A 321 GNRKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVPAE 380 (401)
T ss_dssp TCCSCCEEEECTT-CCEECTTSSSSS-CCCEEEECCSSCCBCCCSSCCCSCTTCCEEEECGG
T ss_pred CCCCccEEEECcc-ccEEcHHhCCCC-CCCEEEEcCCCCcccccccccCCCCCccEEEeCHH
Confidence 5555555555332 444444455555 555555555555444444444442 4555555443
No 132
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.62 E-value=1.3e-15 Score=132.74 Aligned_cols=129 Identities=24% Similarity=0.251 Sum_probs=98.5
Q ss_pred CCCCcEEEcccCccc-ccCCccCCCCCCCCEEeCCCCcCccccchhccCCCCCCEeeccCCccccCccccccCCCCCCEE
Q 047332 446 FPKLGTFIVSVNNIS-GSIPPEIGDSPKLQVLDLSSNSIVGEIPVQLGKLFSLNKLILNLNQLSGGMPLELGSLTELQYL 524 (614)
Q Consensus 446 ~~~L~~L~l~~~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L 524 (614)
.++++.|++++|.++ +.+|..+..+++|++|++++|.+.+. ..+..+++|++|++++|.+++.+|..+..+++|++|
T Consensus 16 ~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L 93 (149)
T 2je0_A 16 PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHL 93 (149)
T ss_dssp GGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEE
T ss_pred CccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEE
Confidence 456677777777766 56666667777888888888877654 567778888888888888886677777778888888
Q ss_pred eCCCCcCccc-CCccccccCCCCEEeCCCCcCCcCCC---hhhhcCCCCCeeeCCC
Q 047332 525 DLSANKLKSS-IPKSIGNLLRLRYLDLSNNQFGHKIP---IELEKLIHLSELDLSY 576 (614)
Q Consensus 525 ~ls~n~l~~~-~~~~l~~l~~L~~L~l~~n~~~~~~p---~~l~~l~~L~~L~L~~ 576 (614)
++++|.+.+. .+..+..+++|++|++++|++++..+ ..+..+++|+.|++++
T Consensus 94 ~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~d 149 (149)
T 2je0_A 94 NLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGYD 149 (149)
T ss_dssp ECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred ECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCCC
Confidence 8888888753 34678888888888888888877665 5678888888888764
No 133
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.62 E-value=1e-16 Score=175.92 Aligned_cols=191 Identities=21% Similarity=0.217 Sum_probs=118.8
Q ss_pred CCCcEEECCCCCCCccCcccccCCCCCCEEe-----CCCCCCCCCCCcCCCCCCCCCEEEcccccCCCCCCccccCCCCC
Q 047332 87 PHLVQLNLSFNIFFGIIPPQIGNLSKLQYLD-----LGSNQLSGVIPPEIGHLNQLRILYFDVNQLHGSIPPEIGQLSLI 161 (614)
Q Consensus 87 ~~L~~L~Ls~~~~~~~~~~~l~~l~~L~~L~-----Ls~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L 161 (614)
+.++.|+|+++.+... +..+.....|+.+. ++.|.+. ..+..+..+++|++|+|++|.+. .+|..+.++++|
T Consensus 173 ~~~~~l~L~~n~~~~~-~~~~l~~l~Ls~~~i~~~~~~~n~~~-~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L 249 (727)
T 4b8c_D 173 PLTPKIELFANGKDEA-NQALLQHKKLSQYSIDEDDDIENRMV-MPKDSKYDDQLWHALDLSNLQIF-NISANIFKYDFL 249 (727)
T ss_dssp ---------------------------------------------------CCCCCCEEECTTSCCS-CCCGGGGGCCSC
T ss_pred CccceEEeeCCCCCcc-hhhHhhcCccCcccccCcccccccee-cChhhhccCCCCcEEECCCCCCC-CCChhhcCCCCC
Confidence 6688899988887663 43333333333333 3334444 55778889999999999999988 788888899999
Q ss_pred cEEEeccccCCCCCCcccCCCCCCcEEEeecCCCcccCCccccCCCCCCeeeccCccCCccCCccccCCCCCCeEEcccC
Q 047332 162 NVLALCHNNLYGSIPSSLGNLSNLANFYFNNNSLFDSIPLVLGNLNSLSTMDLSQNQFSGSIPLSLGNLSNLGILYLYSN 241 (614)
Q Consensus 162 ~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~ 241 (614)
++|+|++|.++ .+|..++.+++|++|+|++|.+. .+|..++.+++|++|+|++|.++ .+|..|..+++|++|+|++|
T Consensus 250 ~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~N 326 (727)
T 4b8c_D 250 TRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGN 326 (727)
T ss_dssp SCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGGTTCSEEECCSSCCC-CCCSSTTSCTTCCCEECTTS
T ss_pred CEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcCCCCCCEEECCCCCCC-ccChhhhcCCCccEEeCCCC
Confidence 99999999998 78888999999999999999988 67888999999999999999987 77888999999999999999
Q ss_pred ccccccchhccCCCC-CCEEeccCCcCccccCccccCCCCCCEEecCCC
Q 047332 242 SFSGSIPSIIGNLKS-LLQLDLSENQLIGSIPLSFGNLSRLTLMSLFNN 289 (614)
Q Consensus 242 ~~~~~~~~~l~~l~~-L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~~ 289 (614)
.+++.+|..+..+.. +..+++++|.+.+.+|. .|+.|+++.|
T Consensus 327 ~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p~------~l~~l~l~~n 369 (727)
T 4b8c_D 327 PLEKQFLKILTEKSVTGLIFYLRDNRPEIPLPH------ERRFIEINTD 369 (727)
T ss_dssp CCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCCC------C---------
T ss_pred ccCCCChHHHhhcchhhhHHhhccCcccCcCcc------ccceeEeecc
Confidence 999888877654321 23477888888877765 4555666655
No 134
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.62 E-value=3e-15 Score=136.25 Aligned_cols=132 Identities=21% Similarity=0.259 Sum_probs=115.1
Q ss_pred CEEECcCcccccccCccccCCCCCcEEEcccCcccccCCc-cCCCCCCCCEEeCCCCcCccccchhccCCCCCCEeeccC
Q 047332 426 TFLNLSQNNFCGEISFNWRNFPKLGTFIVSVNNISGSIPP-EIGDSPKLQVLDLSSNSIVGEIPVQLGKLFSLNKLILNL 504 (614)
Q Consensus 426 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~ 504 (614)
+.++++++.+. .+|..+ .++++.|++++|.+++..+. .+..+++|++|++++|.+++..|..+..+++|++|++++
T Consensus 11 ~~l~~s~~~l~-~ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~ 87 (192)
T 1w8a_A 11 TTVDCTGRGLK-EIPRDI--PLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE 87 (192)
T ss_dssp TEEECTTSCCS-SCCSCC--CTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred CEEEcCCCCcC-cCccCC--CCCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCC
Confidence 68899999885 455443 34899999999999866654 478899999999999999988888999999999999999
Q ss_pred CccccCccccccCCCCCCEEeCCCCcCcccCCccccccCCCCEEeCCCCcCCcCCC
Q 047332 505 NQLSGGMPLELGSLTELQYLDLSANKLKSSIPKSIGNLLRLRYLDLSNNQFGHKIP 560 (614)
Q Consensus 505 n~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~p 560 (614)
|.+++..+..|.++++|++|++++|.+++..|..+..+++|+.|++++|++.+..+
T Consensus 88 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~ 143 (192)
T 1w8a_A 88 NKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCH 143 (192)
T ss_dssp CCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGG
T ss_pred CcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcCc
Confidence 99998888889999999999999999999889999999999999999999987655
No 135
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.56 E-value=2.7e-14 Score=129.82 Aligned_cols=127 Identities=21% Similarity=0.270 Sum_probs=66.2
Q ss_pred CEEECcCcccccccCccccCCCCCcEEEcccCcccccCCccCCCCCCCCEEeCCCCcCccccchhccCCCCCCEeeccCC
Q 047332 426 TFLNLSQNNFCGEISFNWRNFPKLGTFIVSVNNISGSIPPEIGDSPKLQVLDLSSNSIVGEIPVQLGKLFSLNKLILNLN 505 (614)
Q Consensus 426 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n 505 (614)
+.++++++.+. .+|..+ .++++.|++++|.++ .+|..+..+++|+.|++++|.+++..+..|..+++|++|++++|
T Consensus 13 ~~l~~~~~~l~-~ip~~~--~~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N 88 (193)
T 2wfh_A 13 TVVRCSNKGLK-VLPKGI--PRDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYN 88 (193)
T ss_dssp TEEECTTSCCS-SCCSCC--CTTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEcCCCCCC-cCCCCC--CCCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCC
Confidence 35566665554 223222 245555555555554 34445555555555555555555444444555555555555555
Q ss_pred ccccCccccccCCCCCCEEeCCCCcCcccCCccccccCCCCEEeCCCCcCC
Q 047332 506 QLSGGMPLELGSLTELQYLDLSANKLKSSIPKSIGNLLRLRYLDLSNNQFG 556 (614)
Q Consensus 506 ~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~l~~n~~~ 556 (614)
.+++..+..|.++++|+.|++++|.+....+..|..+++|+.|++++|++.
T Consensus 89 ~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 139 (193)
T 2wfh_A 89 RLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLY 139 (193)
T ss_dssp CCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEE
T ss_pred ccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCee
Confidence 555544445555555555555555555433334555555555555555553
No 136
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.55 E-value=4.1e-14 Score=127.03 Aligned_cols=130 Identities=22% Similarity=0.150 Sum_probs=60.7
Q ss_pred CEEECcCcccccccCccccCCCCCcEEEcccCcccccCCccCCCCCCCCEEeCCCCcCccccchhccCCCCCCEeeccCC
Q 047332 426 TFLNLSQNNFCGEISFNWRNFPKLGTFIVSVNNISGSIPPEIGDSPKLQVLDLSSNSIVGEIPVQLGKLFSLNKLILNLN 505 (614)
Q Consensus 426 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n 505 (614)
+.++++++.+... |.. ..++|+.|++++|++++..+..+..+++|++|++++|.+.+..+..+..+++|++|++++|
T Consensus 10 ~~l~~~~~~l~~~-p~~--~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N 86 (177)
T 2o6r_A 10 TEIRCNSKGLTSV-PTG--IPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHEN 86 (177)
T ss_dssp TEEECCSSCCSSC-CTT--CCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEecCCCCccC-CCC--CCCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCC
Confidence 4555555554422 211 1245555555555554333333444555555555555554333333444555555555555
Q ss_pred ccccCccccccCCCCCCEEeCCCCcCcccCCccccccCCCCEEeCCCCcCCcC
Q 047332 506 QLSGGMPLELGSLTELQYLDLSANKLKSSIPKSIGNLLRLRYLDLSNNQFGHK 558 (614)
Q Consensus 506 ~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~ 558 (614)
.+++..+..+..+++|++|++++|.+.+..+..+..+++|+.|++++|++.+.
T Consensus 87 ~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~ 139 (177)
T 2o6r_A 87 KLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCS 139 (177)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCC
T ss_pred CccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeecc
Confidence 55444444444445555555555555433333344445555555555554443
No 137
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.52 E-value=2.6e-14 Score=128.20 Aligned_cols=128 Identities=20% Similarity=0.095 Sum_probs=57.1
Q ss_pred CCCCCEEeCCCCcCccccchhccCCCCCCEeeccCCccccCccccccCCCCCCEEeCCCCcCcccCCccccccCCCCEEe
Q 047332 470 SPKLQVLDLSSNSIVGEIPVQLGKLFSLNKLILNLNQLSGGMPLELGSLTELQYLDLSANKLKSSIPKSIGNLLRLRYLD 549 (614)
Q Consensus 470 ~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~ 549 (614)
+++|++|++++|.+. .++......++|++|++++|.+++. ..+..+++|++|++++|.+.+..+..+..+++|+.|+
T Consensus 18 ~~~L~~L~l~~n~l~-~i~~~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 94 (176)
T 1a9n_A 18 AVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELI 94 (176)
T ss_dssp TTSCEEEECTTSCCC-SCCCGGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEE
T ss_pred cCCceEEEeeCCCCc-hhHHhhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCCCEEE
Confidence 344444444444444 2222111122445555555544432 3444455555555555555433333334455555555
Q ss_pred CCCCcCCcCCCh--hhhcCCCCCeeeCCCCCCCCCCCc----cccCCCCCCeEECcCCC
Q 047332 550 LSNNQFGHKIPI--ELEKLIHLSELDLSYNFLGEEIPF----QICNVKSLEKLNLCHNN 602 (614)
Q Consensus 550 l~~n~~~~~~p~--~l~~l~~L~~L~L~~n~~~~~~p~----~l~~l~sL~~L~l~~n~ 602 (614)
+++|++. .+|. .+..+++|+.|++++|++.. +|. .+..+++|++|++++|.
T Consensus 95 L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~~-~~~~~~~~~~~l~~L~~Ld~~~n~ 151 (176)
T 1a9n_A 95 LTNNSLV-ELGDLDPLASLKSLTYLCILRNPVTN-KKHYRLYVIYKVPQVRVLDFQKVK 151 (176)
T ss_dssp CCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGGG-STTHHHHHHHHCTTCSEETTEECC
T ss_pred CCCCcCC-cchhhHhhhcCCCCCEEEecCCCCCC-cHhHHHHHHHHCCccceeCCCcCC
Confidence 5555552 2332 44455555555555555532 222 24445555555555554
No 138
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.49 E-value=7.6e-14 Score=125.10 Aligned_cols=133 Identities=20% Similarity=0.139 Sum_probs=89.6
Q ss_pred ccCCCCCcEEEcccCcccccCCccCCCCCCCCEEeCCCCcCccccchhccCCCCCCEeeccCCccccCccccccCCCCCC
Q 047332 443 WRNFPKLGTFIVSVNNISGSIPPEIGDSPKLQVLDLSSNSIVGEIPVQLGKLFSLNKLILNLNQLSGGMPLELGSLTELQ 522 (614)
Q Consensus 443 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~ 522 (614)
+..+++|+.|++++|.++. ++......++|+.|++++|.+.+. ..+..+++|++|++++|.+++..+..+..+++|+
T Consensus 15 ~~~~~~L~~L~l~~n~l~~-i~~~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~ 91 (176)
T 1a9n_A 15 YTNAVRDRELDLRGYKIPV-IENLGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLT 91 (176)
T ss_dssp EECTTSCEEEECTTSCCCS-CCCGGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCC
T ss_pred cCCcCCceEEEeeCCCCch-hHHhhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCCC
Confidence 3445566666666666652 333222234777777777777643 4667777788888888877754444557778888
Q ss_pred EEeCCCCcCcccCCc--cccccCCCCEEeCCCCcCCcCCCh----hhhcCCCCCeeeCCCCCCC
Q 047332 523 YLDLSANKLKSSIPK--SIGNLLRLRYLDLSNNQFGHKIPI----ELEKLIHLSELDLSYNFLG 580 (614)
Q Consensus 523 ~L~ls~n~l~~~~~~--~l~~l~~L~~L~l~~n~~~~~~p~----~l~~l~~L~~L~L~~n~~~ 580 (614)
+|++++|.+. .+|. .+..+++|+.|++++|+++. +|. .+..+++|+.||+++|...
T Consensus 92 ~L~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~~-~~~~~~~~~~~l~~L~~Ld~~~n~~~ 153 (176)
T 1a9n_A 92 ELILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVTN-KKHYRLYVIYKVPQVRVLDFQKVKLK 153 (176)
T ss_dssp EEECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGGG-STTHHHHHHHHCTTCSEETTEECCHH
T ss_pred EEECCCCcCC-cchhhHhhhcCCCCCEEEecCCCCCC-cHhHHHHHHHHCCccceeCCCcCCHH
Confidence 8888888875 4454 67778888888888888854 344 3777888888888888653
No 139
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=99.47 E-value=5.5e-12 Score=128.71 Aligned_cols=333 Identities=8% Similarity=0.076 Sum_probs=193.9
Q ss_pred ccchhccCCC-CCCEEeccCCcCccccCccccCCCCCCEEecCCCc---ccccCCccCCCCCCCCEeecCCCcccccCCc
Q 047332 246 SIPSIIGNLK-SLLQLDLSENQLIGSIPLSFGNLSRLTLMSLFNNL---LSGSLPPILGNLKSLSALGLHINQLSGVIPS 321 (614)
Q Consensus 246 ~~~~~l~~l~-~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~~~---~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~ 321 (614)
....+|.+++ .|+.+.+..+ ++.....+|.++++|+.+.+..+. ++......|..+.+|+.+.+..+ ++.....
T Consensus 54 Ig~~aF~~~~~~L~sI~iP~s-vt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~I~~~ 131 (394)
T 4gt6_A 54 IGDRVFCNYKYVLTSVQIPDT-VTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTEIDSE 131 (394)
T ss_dssp ECTTTTTTCCSCCCEEEECTT-CCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSEECTT
T ss_pred cCHhhccCCCCcCEEEEECCC-eeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cceehhh
Confidence 3345566664 5888888754 565667778888888888887653 44444556777788887776543 4435556
Q ss_pred cccCCCCCCEEEccCCcccccCcccccCCCCCcEEEcccccCCccCCccccCCCCCCEEECcCCCCCCCCCccccCCCCC
Q 047332 322 SIGNLSSLRALYLYNNGLCGFVPEEIRYLKSLSELELCKNHLSGVIPHSIGNLTGLLLLNMCENHLSGPIPKSFKNLTSV 401 (614)
Q Consensus 322 ~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~L 401 (614)
+|..+.+|+.+.+..+ +.......+..+..|+.+.+.++ ++.....+|.. ..|+.+.+..+.. ......|..|..+
T Consensus 132 aF~~c~~L~~i~lp~~-~~~I~~~~F~~c~~L~~i~~~~~-~~~I~~~aF~~-~~l~~i~ip~~~~-~i~~~af~~c~~l 207 (394)
T 4gt6_A 132 AFHHCEELDTVTIPEG-VTSVADGMFSYCYSLHTVTLPDS-VTAIEERAFTG-TALTQIHIPAKVT-RIGTNAFSECFAL 207 (394)
T ss_dssp TTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTT-CCCSEEEECTTCC-EECTTTTTTCTTC
T ss_pred hhhhhcccccccccce-eeeecccceecccccccccccce-eeEeccccccc-cceeEEEECCccc-ccccchhhhcccc
Confidence 6777778888877643 33344456677777777777654 33233344433 4566666654322 2333456666666
Q ss_pred cEEEccCCcCCcccccccCCCCCCCEEECcCcccccccCccccCCCCCcEEEcccCcccccCCccCCCCCCCCEEeCCCC
Q 047332 402 ERVLLNQNNLSGKVYEAFGDHPNLTFLNLSQNNFCGEISFNWRNFPKLGTFIVSVNNISGSIPPEIGDSPKLQVLDLSSN 481 (614)
Q Consensus 402 ~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~ 481 (614)
+................+....... .....+.....+..+.+... ++..-..+|..+..|+.+.+.+.
T Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~ip~~-v~~i~~~aF~~c~~L~~i~lp~~ 275 (394)
T 4gt6_A 208 STITSDSESYPAIDNVLYEKSANGD-----------YALIRYPSQREDPAFKIPNG-VARIETHAFDSCAYLASVKMPDS 275 (394)
T ss_dssp CEEEECCSSSCBSSSCEEEECTTSC-----------EEEEECCTTCCCSEEECCTT-EEEECTTTTTTCSSCCEEECCTT
T ss_pred ceecccccccccccceeeccccccc-----------ccccccccccccceEEcCCc-ceEcccceeeecccccEEecccc
Confidence 6666554332211100000000000 00001112233333433321 22223346677788888888665
Q ss_pred cCccccchhccCCCCCCEeeccCCccccCccccccCCCCCCEEeCCCCcCcccCCccccccCCCCEEeCCCCcCCcCCCh
Q 047332 482 SIVGEIPVQLGKLFSLNKLILNLNQLSGGMPLELGSLTELQYLDLSANKLKSSIPKSIGNLLRLRYLDLSNNQFGHKIPI 561 (614)
Q Consensus 482 ~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~ 561 (614)
... .....|.++..|+.+.+.. .+......+|.+|.+|+.++|..+ ++.+...+|.+|++|+.+.+..+ ++.....
T Consensus 276 ~~~-I~~~aF~~c~~L~~i~l~~-~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s-v~~I~~~ 351 (394)
T 4gt6_A 276 VVS-IGTGAFMNCPALQDIEFSS-RITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIAIPSS-VTKIPES 351 (394)
T ss_dssp CCE-ECTTTTTTCTTCCEEECCT-TCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEECTT-CCBCCGG
T ss_pred cce-ecCcccccccccccccCCC-cccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEECcc-cCEEhHh
Confidence 432 3445677888888888864 344445667888888998888765 55566678888889999888654 6556667
Q ss_pred hhhcCCCCCeeeCCCCCCCCCCCccccCCCCCCeEECcCCCC
Q 047332 562 ELEKLIHLSELDLSYNFLGEEIPFQICNVKSLEKLNLCHNNL 603 (614)
Q Consensus 562 ~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~sL~~L~l~~n~l 603 (614)
+|.++++|+.+++.++.... ..+..+.+|+.+.+..+.+
T Consensus 352 aF~~C~~L~~i~~~~~~~~~---~~~~~~~~L~~i~i~~~~~ 390 (394)
T 4gt6_A 352 AFSNCTALNNIEYSGSRSQW---NAISTDSGLQNLPVAPGSI 390 (394)
T ss_dssp GGTTCTTCCEEEESSCHHHH---HTCBCCCCC----------
T ss_pred HhhCCCCCCEEEECCceeeh---hhhhccCCCCEEEeCCCCE
Confidence 88888899999888875422 3456778888888776543
No 140
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.46 E-value=3.4e-13 Score=119.87 Aligned_cols=107 Identities=25% Similarity=0.234 Sum_probs=62.9
Q ss_pred CCEEeCCCCcCccccchhccCCCCCCEeeccCCccccCccccccCCCCCCEEeCCCCcCcccCCccccccCCCCEEeCCC
Q 047332 473 LQVLDLSSNSIVGEIPVQLGKLFSLNKLILNLNQLSGGMPLELGSLTELQYLDLSANKLKSSIPKSIGNLLRLRYLDLSN 552 (614)
Q Consensus 473 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~l~~ 552 (614)
.+.++++++.++ .+|..+ .++|++|++++|.+++..|..|.++++|++|++++|.+.+..+..|..+++|++|++++
T Consensus 11 ~~~l~~s~n~l~-~ip~~~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~ 87 (170)
T 3g39_A 11 GTTVDCSGKSLA-SVPTGI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLND 87 (170)
T ss_dssp TTEEECTTSCCS-SCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEEEeCCCCcC-ccCccC--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCC
Confidence 355666666665 344433 25566666666666655555566666666666666666654444556666666666666
Q ss_pred CcCCcCCChhhhcCCCCCeeeCCCCCCCCC
Q 047332 553 NQFGHKIPIELEKLIHLSELDLSYNFLGEE 582 (614)
Q Consensus 553 n~~~~~~p~~l~~l~~L~~L~L~~n~~~~~ 582 (614)
|++++..+..|.++++|++|+|++|++...
T Consensus 88 N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~ 117 (170)
T 3g39_A 88 NQLKSIPRGAFDNLKSLTHIWLLNNPWDCA 117 (170)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCBCTT
T ss_pred CccCEeCHHHhcCCCCCCEEEeCCCCCCCC
Confidence 666555555566666666666666655443
No 141
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.44 E-value=4.3e-16 Score=142.78 Aligned_cols=130 Identities=22% Similarity=0.309 Sum_probs=66.3
Q ss_pred CCCCcEEECCCCCCCccCcc------cccCCCCCCEEeCCCCCCCCCCCcCCCCCCCCCEEEcccccCCCCCCccccCCC
Q 047332 86 FPHLVQLNLSFNIFFGIIPP------QIGNLSKLQYLDLGSNQLSGVIPPEIGHLNQLRILYFDVNQLHGSIPPEIGQLS 159 (614)
Q Consensus 86 l~~L~~L~Ls~~~~~~~~~~------~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~ 159 (614)
...++.++++.+.+.+..|. .+..+++|++|++++|.+++ +| .+..+++|++|++++|.+. .+|..+..++
T Consensus 17 ~~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~~~ 93 (198)
T 1ds9_A 17 RKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAVAD 93 (198)
T ss_dssp TTCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHHHHH
T ss_pred cccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhhcCC
Confidence 34444444444444444433 55666666666666666653 44 5555666666666666655 4555555555
Q ss_pred CCcEEEeccccCCCCCCcccCCCCCCcEEEeecCCCcccCC-ccccCCCCCCeeeccCccCC
Q 047332 160 LINVLALCHNNLYGSIPSSLGNLSNLANFYFNNNSLFDSIP-LVLGNLNSLSTMDLSQNQFS 220 (614)
Q Consensus 160 ~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~-~~l~~l~~L~~L~l~~~~~~ 220 (614)
+|++|++++|.+++ +| .+..+++|++|++++|.+.+..+ ..+..+++|++|++++|.+.
T Consensus 94 ~L~~L~L~~N~l~~-l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~ 153 (198)
T 1ds9_A 94 TLEELWISYNQIAS-LS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLY 153 (198)
T ss_dssp HCSEEEEEEEECCC-HH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHH
T ss_pred cCCEEECcCCcCCc-CC-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccc
Confidence 56666666655553 22 34444555555555554433211 23344444444444444443
No 142
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=99.44 E-value=1.2e-11 Score=126.17 Aligned_cols=331 Identities=8% Similarity=0.049 Sum_probs=146.9
Q ss_pred CcccccCCC-CCcEEECCCCCCCccCcccccCCCCCCEEeCCCCC---CCCCCCcCCCCCCCCCEEEcccccCCCCCCcc
Q 047332 79 QEFAFSSFP-HLVQLNLSFNIFFGIIPPQIGNLSKLQYLDLGSNQ---LSGVIPPEIGHLNQLRILYFDVNQLHGSIPPE 154 (614)
Q Consensus 79 ~~~~~~~l~-~L~~L~Ls~~~~~~~~~~~l~~l~~L~~L~Ls~n~---l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~ 154 (614)
...+|.++. .|+.+.+..+ ++.+-..+|.+|++|+.+.+..+. ++..-..+|..+.+|+.+.+..+ ++.....+
T Consensus 55 g~~aF~~~~~~L~sI~iP~s-vt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~I~~~a 132 (394)
T 4gt6_A 55 GDRVFCNYKYVLTSVQIPDT-VTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTEIDSEA 132 (394)
T ss_dssp CTTTTTTCCSCCCEEEECTT-CCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSEECTTT
T ss_pred CHhhccCCCCcCEEEEECCC-eeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cceehhhh
Confidence 334666663 4677766543 444455566667777777665542 33333445666666666655543 23233344
Q ss_pred ccCCCCCcEEEeccccCCCCCCcccCCCCCCcEEEeecCCCcccCCccccCCCCCCeeeccCccCCccCCccccCCCCCC
Q 047332 155 IGQLSLINVLALCHNNLYGSIPSSLGNLSNLANFYFNNNSLFDSIPLVLGNLNSLSTMDLSQNQFSGSIPLSLGNLSNLG 234 (614)
Q Consensus 155 ~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~ 234 (614)
|.++.+|+.+.+..+ +.......+..+.+|+.+.+..+ ++......|. ...|+
T Consensus 133 F~~c~~L~~i~lp~~-~~~I~~~~F~~c~~L~~i~~~~~-------------------------~~~I~~~aF~-~~~l~ 185 (394)
T 4gt6_A 133 FHHCEELDTVTIPEG-VTSVADGMFSYCYSLHTVTLPDS-------------------------VTAIEERAFT-GTALT 185 (394)
T ss_dssp TTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEECCTT-------------------------CCEECTTTTT-TCCCS
T ss_pred hhhhcccccccccce-eeeecccceecccccccccccce-------------------------eeEecccccc-cccee
Confidence 555566666665432 22222233444555555544332 1111122222 23444
Q ss_pred eEEcccCccccccchhccCCCCCCEEeccCCcCccccCccccCCCCCCEEecCCCcccccCCccCCCCCCCCEeecCCCc
Q 047332 235 ILYLYSNSFSGSIPSIIGNLKSLLQLDLSENQLIGSIPLSFGNLSRLTLMSLFNNLLSGSLPPILGNLKSLSALGLHINQ 314 (614)
Q Consensus 235 ~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~n~ 314 (614)
.+.+..+. ......++..+..++................+.......... ..+.....+..+.+.. .
T Consensus 186 ~i~ip~~~-~~i~~~af~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~ip~-~ 252 (394)
T 4gt6_A 186 QIHIPAKV-TRIGTNAFSECFALSTITSDSESYPAIDNVLYEKSANGDYAL-----------IRYPSQREDPAFKIPN-G 252 (394)
T ss_dssp EEEECTTC-CEECTTTTTTCTTCCEEEECCSSSCBSSSCEEEECTTSCEEE-----------EECCTTCCCSEEECCT-T
T ss_pred EEEECCcc-cccccchhhhccccceecccccccccccceeecccccccccc-----------cccccccccceEEcCC-c
Confidence 44443321 112233444455555554433322110000000000000000 0011112222222211 1
Q ss_pred ccccCCccccCCCCCCEEEccCCcccccCcccccCCCCCcEEEcccccCCccCCccccCCCCCCEEECcCCCCCCCCCcc
Q 047332 315 LSGVIPSSIGNLSSLRALYLYNNGLCGFVPEEIRYLKSLSELELCKNHLSGVIPHSIGNLTGLLLLNMCENHLSGPIPKS 394 (614)
Q Consensus 315 l~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~ 394 (614)
++.....+|..+..|+.+.+..+. .......|..++.|+.+.+. +.++.....+|.++.+|+.+++..+ ++.+...+
T Consensus 253 v~~i~~~aF~~c~~L~~i~lp~~~-~~I~~~aF~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~a 329 (394)
T 4gt6_A 253 VARIETHAFDSCAYLASVKMPDSV-VSIGTGAFMNCPALQDIEFS-SRITELPESVFAGCISLKSIDIPEG-ITQILDDA 329 (394)
T ss_dssp EEEECTTTTTTCSSCCEEECCTTC-CEECTTTTTTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT-CCEECTTT
T ss_pred ceEcccceeeecccccEEeccccc-ceecCcccccccccccccCC-CcccccCceeecCCCCcCEEEeCCc-ccEehHhH
Confidence 222333445555555555554332 22333445555566666554 2333344455666666666666543 33344456
Q ss_pred ccCCCCCcEEEccCCcCCcccccccCCCCCCCEEECcCcccccccCccccCCCCCcEEEcccCc
Q 047332 395 FKNLTSVERVLLNQNNLSGKVYEAFGDHPNLTFLNLSQNNFCGEISFNWRNFPKLGTFIVSVNN 458 (614)
Q Consensus 395 ~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 458 (614)
|.+|.+|+.+.+..+ ++.....+|.+|.+|+.+++.++.... ..+..+..|+.+.+..+.
T Consensus 330 F~~C~~L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~~~~~---~~~~~~~~L~~i~i~~~~ 389 (394)
T 4gt6_A 330 FAGCEQLERIAIPSS-VTKIPESAFSNCTALNNIEYSGSRSQW---NAISTDSGLQNLPVAPGS 389 (394)
T ss_dssp TTTCTTCCEEEECTT-CCBCCGGGGTTCTTCCEEEESSCHHHH---HTCBCCCCC---------
T ss_pred hhCCCCCCEEEECcc-cCEEhHhHhhCCCCCCEEEECCceeeh---hhhhccCCCCEEEeCCCC
Confidence 677777777777543 444555667777777777776654332 234456666666665443
No 143
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.42 E-value=1e-12 Score=117.17 Aligned_cols=105 Identities=23% Similarity=0.257 Sum_probs=66.4
Q ss_pred CEEeCCCCcCccccchhccCCCCCCEeeccCCccccCccccccCCCCCCEEeCCCCcCcccCCccccccCCCCEEeCCCC
Q 047332 474 QVLDLSSNSIVGEIPVQLGKLFSLNKLILNLNQLSGGMPLELGSLTELQYLDLSANKLKSSIPKSIGNLLRLRYLDLSNN 553 (614)
Q Consensus 474 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~l~~n 553 (614)
+.++++++.+. .+|..+. ++|++|++++|.+.+..|..|.++++|++|++++|.+.+..+..|..+++|+.|+|++|
T Consensus 15 ~~l~~~~n~l~-~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N 91 (174)
T 2r9u_A 15 TLVNCQNIRLA-SVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDN 91 (174)
T ss_dssp SEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred cEEEeCCCCCC-ccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCC
Confidence 56667766664 4554442 56666777766666666666666666666666666666544444566666666666666
Q ss_pred cCCcCCChhhhcCCCCCeeeCCCCCCCC
Q 047332 554 QFGHKIPIELEKLIHLSELDLSYNFLGE 581 (614)
Q Consensus 554 ~~~~~~p~~l~~l~~L~~L~L~~n~~~~ 581 (614)
++++..+..|..+++|++|+|++|++..
T Consensus 92 ~l~~l~~~~~~~l~~L~~L~L~~N~~~c 119 (174)
T 2r9u_A 92 HLKSIPRGAFDNLKSLTHIYLYNNPWDC 119 (174)
T ss_dssp CCCCCCTTTTTTCTTCSEEECCSSCBCT
T ss_pred ccceeCHHHhccccCCCEEEeCCCCccc
Confidence 6665544456666666666666666654
No 144
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.42 E-value=1.3e-15 Score=139.53 Aligned_cols=136 Identities=18% Similarity=0.260 Sum_probs=92.8
Q ss_pred ccCCCCCCEEeCCCCCCCCCCCc------CCCCCCCCCEEEcccccCCCCCCccccCCCCCcEEEeccccCCCCCCcccC
Q 047332 107 IGNLSKLQYLDLGSNQLSGVIPP------EIGHLNQLRILYFDVNQLHGSIPPEIGQLSLINVLALCHNNLYGSIPSSLG 180 (614)
Q Consensus 107 l~~l~~L~~L~Ls~n~l~~~~~~------~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~ 180 (614)
+.....++.++++.+.+.+.+|. .+..+++|++|++++|.+.+ +| .+.++++|++|++++|.++ .+|..+.
T Consensus 14 ~~~~~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~ 90 (198)
T 1ds9_A 14 FEERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDA 90 (198)
T ss_dssp HHHTTCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHH
T ss_pred HHhcccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhh
Confidence 45556777777777777776665 77778888888888888774 56 7777888888888888777 4566666
Q ss_pred CCCCCcEEEeecCCCcccCCccccCCCCCCeeeccCccCCccCC-ccccCCCCCCeEEcccCcccccc
Q 047332 181 NLSNLANFYFNNNSLFDSIPLVLGNLNSLSTMDLSQNQFSGSIP-LSLGNLSNLGILYLYSNSFSGSI 247 (614)
Q Consensus 181 ~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~-~~l~~l~~L~~L~L~~~~~~~~~ 247 (614)
.+++|++|++++|.+.+. | .+..+++|+.|++++|.+++..+ ..+..+++|++|++++|.+.+..
T Consensus 91 ~~~~L~~L~L~~N~l~~l-~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~ 156 (198)
T 1ds9_A 91 VADTLEELWISYNQIASL-S-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDY 156 (198)
T ss_dssp HHHHCSEEEEEEEECCCH-H-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHH
T ss_pred cCCcCCEEECcCCcCCcC-C-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCcccccc
Confidence 667777777777777652 3 46666667777777776653221 34556666666666666655443
No 145
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.38 E-value=2.2e-12 Score=114.55 Aligned_cols=108 Identities=31% Similarity=0.261 Sum_probs=86.7
Q ss_pred CcEEEcccCcccccCCccCCCCCCCCEEeCCCCcCccccchhccCCCCCCEeeccCCccccCccccccCCCCCCEEeCCC
Q 047332 449 LGTFIVSVNNISGSIPPEIGDSPKLQVLDLSSNSIVGEIPVQLGKLFSLNKLILNLNQLSGGMPLELGSLTELQYLDLSA 528 (614)
Q Consensus 449 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~ls~ 528 (614)
.+.++++++.++. +|..+. +.|+.|++++|.+.+..|..|..+++|++|++++|.+++..+..|..+++|++|++++
T Consensus 11 ~~~l~~s~n~l~~-ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~ 87 (170)
T 3g39_A 11 GTTVDCSGKSLAS-VPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLND 87 (170)
T ss_dssp TTEEECTTSCCSS-CCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEEEeCCCCcCc-cCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCC
Confidence 4678888888873 565443 7788888888888877777888888888888888888877777778888888888888
Q ss_pred CcCcccCCccccccCCCCEEeCCCCcCCcCC
Q 047332 529 NKLKSSIPKSIGNLLRLRYLDLSNNQFGHKI 559 (614)
Q Consensus 529 n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~ 559 (614)
|.+.+..+..|..+++|+.|++++|++....
T Consensus 88 N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c 118 (170)
T 3g39_A 88 NQLKSIPRGAFDNLKSLTHIWLLNNPWDCAC 118 (170)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCBCTTB
T ss_pred CccCEeCHHHhcCCCCCCEEEeCCCCCCCCc
Confidence 8888766667888888888888888886554
No 146
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.36 E-value=4e-12 Score=113.25 Aligned_cols=106 Identities=29% Similarity=0.291 Sum_probs=86.0
Q ss_pred cEEEcccCcccccCCccCCCCCCCCEEeCCCCcCccccchhccCCCCCCEeeccCCccccCccccccCCCCCCEEeCCCC
Q 047332 450 GTFIVSVNNISGSIPPEIGDSPKLQVLDLSSNSIVGEIPVQLGKLFSLNKLILNLNQLSGGMPLELGSLTELQYLDLSAN 529 (614)
Q Consensus 450 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~ls~n 529 (614)
+.++++++.++ .+|..+. ++|++|++++|.+.+..|..|..+++|++|+|++|.+++..+..|..+++|++|++++|
T Consensus 15 ~~l~~~~n~l~-~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N 91 (174)
T 2r9u_A 15 TLVNCQNIRLA-SVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDN 91 (174)
T ss_dssp SEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred cEEEeCCCCCC-ccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCC
Confidence 67888888875 5666554 78889999999888777888888888999999999888766666788888999999999
Q ss_pred cCcccCCccccccCCCCEEeCCCCcCCcC
Q 047332 530 KLKSSIPKSIGNLLRLRYLDLSNNQFGHK 558 (614)
Q Consensus 530 ~l~~~~~~~l~~l~~L~~L~l~~n~~~~~ 558 (614)
.+.+..+..|..+++|+.|++++|++...
T Consensus 92 ~l~~l~~~~~~~l~~L~~L~L~~N~~~c~ 120 (174)
T 2r9u_A 92 HLKSIPRGAFDNLKSLTHIYLYNNPWDCE 120 (174)
T ss_dssp CCCCCCTTTTTTCTTCSEEECCSSCBCTT
T ss_pred ccceeCHHHhccccCCCEEEeCCCCcccc
Confidence 88866555688888899999998888654
No 147
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.28 E-value=1.3e-13 Score=138.74 Aligned_cols=158 Identities=16% Similarity=0.094 Sum_probs=79.8
Q ss_pred CCCcEEEcccCcccccCCccC-CCCCCCCEEeCCCCcCccccchhc-----cCCCCCCEeeccCCccccC----cccccc
Q 047332 447 PKLGTFIVSVNNISGSIPPEI-GDSPKLQVLDLSSNSIVGEIPVQL-----GKLFSLNKLILNLNQLSGG----MPLELG 516 (614)
Q Consensus 447 ~~L~~L~l~~~~~~~~~~~~~-~~~~~L~~L~l~~~~~~~~~~~~~-----~~~~~L~~L~l~~n~~~~~----~~~~~~ 516 (614)
++|+.|++++|.++......+ ..+++|++|++++|.+.+.....+ ...+.|++|++++|.++.. ++..+.
T Consensus 101 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~ 180 (372)
T 3un9_A 101 HALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLA 180 (372)
T ss_dssp SCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHH
T ss_pred CCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHh
Confidence 345555555554432211111 123456666666666653322222 2345666666666666532 333445
Q ss_pred CCCCCCEEeCCCCcCcccC----CccccccCCCCEEeCCCCcCCcC----CChhhhcCCCCCeeeCCCCCCCCCCCcccc
Q 047332 517 SLTELQYLDLSANKLKSSI----PKSIGNLLRLRYLDLSNNQFGHK----IPIELEKLIHLSELDLSYNFLGEEIPFQIC 588 (614)
Q Consensus 517 ~l~~L~~L~ls~n~l~~~~----~~~l~~l~~L~~L~l~~n~~~~~----~p~~l~~l~~L~~L~L~~n~~~~~~p~~l~ 588 (614)
.+++|++|++++|.+.+.. ++.+..+++|++|+|++|.+++. ++..+...++|++|+|++|.+.......+.
T Consensus 181 ~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~~g~~~L~ 260 (372)
T 3un9_A 181 GNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELSSEGRQVLR 260 (372)
T ss_dssp TCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCCHHHHHHHH
T ss_pred cCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCCHHHHHHHH
Confidence 6666777777777665422 34455566777777777777543 223344556777777777776554333332
Q ss_pred CC---C--CCCeEE--CcCCCCc
Q 047332 589 NV---K--SLEKLN--LCHNNLL 604 (614)
Q Consensus 589 ~l---~--sL~~L~--l~~n~l~ 604 (614)
.. . .|+.+. +..+.++
T Consensus 261 ~~~~~~~~~L~~l~~ll~~~~~~ 283 (372)
T 3un9_A 261 DLGGAAEGGARVVVSLTEGTAVS 283 (372)
T ss_dssp HCC------CEEECCCC----CH
T ss_pred HHhcCCCccchhhHhhhcCCccC
Confidence 21 1 155555 5555554
No 148
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.27 E-value=1.8e-13 Score=137.67 Aligned_cols=160 Identities=22% Similarity=0.252 Sum_probs=117.6
Q ss_pred CCCCcEEEcccCcccccC----CccCC-CCCCCCEEeCCCCcCccccchhc-cCCCCCCEeeccCCccccCccccc----
Q 047332 446 FPKLGTFIVSVNNISGSI----PPEIG-DSPKLQVLDLSSNSIVGEIPVQL-GKLFSLNKLILNLNQLSGGMPLEL---- 515 (614)
Q Consensus 446 ~~~L~~L~l~~~~~~~~~----~~~~~-~~~~L~~L~l~~~~~~~~~~~~~-~~~~~L~~L~l~~n~~~~~~~~~~---- 515 (614)
.++|+.|++++|.++... ...+. ..+.|++|++++|.+.+.....+ ..+++|++|+|++|.++......+
T Consensus 71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L 150 (372)
T 3un9_A 71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLL 150 (372)
T ss_dssp HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHH
T ss_pred HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHH
Confidence 345666666666665332 22223 34789999999999875433222 345689999999999975433333
Q ss_pred -cCCCCCCEEeCCCCcCccc----CCccccccCCCCEEeCCCCcCCcCC----ChhhhcCCCCCeeeCCCCCCCCC----
Q 047332 516 -GSLTELQYLDLSANKLKSS----IPKSIGNLLRLRYLDLSNNQFGHKI----PIELEKLIHLSELDLSYNFLGEE---- 582 (614)
Q Consensus 516 -~~l~~L~~L~ls~n~l~~~----~~~~l~~l~~L~~L~l~~n~~~~~~----p~~l~~l~~L~~L~L~~n~~~~~---- 582 (614)
...++|++|++++|.+++. ++..+..+++|++|+|++|.+.+.. +..+...++|++|+|++|.+...
T Consensus 151 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~ 230 (372)
T 3un9_A 151 LHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALA 230 (372)
T ss_dssp HSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHH
T ss_pred HhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHH
Confidence 3578999999999999753 3445577899999999999997643 45677888999999999999764
Q ss_pred CCccccCCCCCCeEECcCCCCcc
Q 047332 583 IPFQICNVKSLEKLNLCHNNLLG 605 (614)
Q Consensus 583 ~p~~l~~l~sL~~L~l~~n~l~~ 605 (614)
++..+...++|++|++++|++..
T Consensus 231 l~~~L~~~~~L~~L~Ls~N~i~~ 253 (372)
T 3un9_A 231 LARAAREHPSLELLHLYFNELSS 253 (372)
T ss_dssp HHHHHHHCSSCCEEECTTSSCCH
T ss_pred HHHHHHhCCCCCEEeccCCCCCH
Confidence 33445567999999999999864
No 149
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=99.23 E-value=3.2e-09 Score=107.57 Aligned_cols=128 Identities=6% Similarity=-0.020 Sum_probs=72.6
Q ss_pred hccCCCCCCEEeccCCcCccccCccccCCCCCCEEecCCCcccccCCccCCCCCCCCEeecCCCcccccCCccccCCCCC
Q 047332 250 IIGNLKSLLQLDLSENQLIGSIPLSFGNLSRLTLMSLFNNLLSGSLPPILGNLKSLSALGLHINQLSGVIPSSIGNLSSL 329 (614)
Q Consensus 250 ~l~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L 329 (614)
++....+|+.+.+.. .++.....+|.++.+|+.+.+..+ ++......|..+ +|+.+.+..+ ++.....+|..+ +|
T Consensus 41 ~~~~~~~i~~v~ip~-~vt~Ig~~aF~~C~~L~~I~lp~~-v~~Ig~~aF~~c-~l~~i~~~~~-l~~I~~~aF~~~-~L 115 (379)
T 4h09_A 41 WYKDRDRISEVRVNS-GITSIGEANFNSCYNMTKVTVAST-VTSIGDGAFADT-KLQSYTGMER-VKKFGDYVFQGT-DL 115 (379)
T ss_dssp TGGGGGGCSEEEECT-TEEEECTTTTTTCTTCCEEEECTT-CCEECTTTTTTC-CCCEEEECTT-CCEECTTTTTTC-CC
T ss_pred ccccccCCEEEEeCC-CccChHHHHhhCCCCCCEEEeCCc-ceEechhhhcCC-CCceEECCce-eeEeccceeccC-Cc
Confidence 345566788888865 355555667888888888888654 444444566665 5666666432 443444455543 67
Q ss_pred CEEEccCCcccccCcccccCCCCCcEEEcccccCCccCCccccCCCCCCEEECcCC
Q 047332 330 RALYLYNNGLCGFVPEEIRYLKSLSELELCKNHLSGVIPHSIGNLTGLLLLNMCEN 385 (614)
Q Consensus 330 ~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~ls~n 385 (614)
+.+.+..+ +.......|..+ .++.+.+..+ ++......|..+..++.+.+..+
T Consensus 116 ~~i~lp~~-~~~i~~~~F~~~-~l~~~~~~~~-v~~i~~~~f~~~~~l~~~~~~~~ 168 (379)
T 4h09_A 116 DDFEFPGA-TTEIGNYIFYNS-SVKRIVIPKS-VTTIKDGIGYKAENLEKIEVSSN 168 (379)
T ss_dssp SEEECCTT-CCEECTTTTTTC-CCCEEEECTT-CCEECSCTTTTCTTCCEEEECTT
T ss_pred ccccCCCc-cccccccccccc-eeeeeeccce-eeccccchhcccccccccccccc
Confidence 77777654 222233344433 4555555433 33233445555666666655443
No 150
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=99.22 E-value=4e-09 Score=106.90 Aligned_cols=316 Identities=9% Similarity=0.038 Sum_probs=174.8
Q ss_pred ccccCCCCCCeEEcccCccccccchhccCCCCCCEEeccCCcCccccCccccCCCCCCEEecCCCcccccCCccCCCCCC
Q 047332 225 LSLGNLSNLGILYLYSNSFSGSIPSIIGNLKSLLQLDLSENQLIGSIPLSFGNLSRLTLMSLFNNLLSGSLPPILGNLKS 304 (614)
Q Consensus 225 ~~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~ 304 (614)
.++....+|+.+.+.. .++.....+|.++.+|+.+++..+ +......+|..+ +|+.+.+..+ +.......|.. .+
T Consensus 40 ~~~~~~~~i~~v~ip~-~vt~Ig~~aF~~C~~L~~I~lp~~-v~~Ig~~aF~~c-~l~~i~~~~~-l~~I~~~aF~~-~~ 114 (379)
T 4h09_A 40 PWYKDRDRISEVRVNS-GITSIGEANFNSCYNMTKVTVAST-VTSIGDGAFADT-KLQSYTGMER-VKKFGDYVFQG-TD 114 (379)
T ss_dssp TTGGGGGGCSEEEECT-TEEEECTTTTTTCTTCCEEEECTT-CCEECTTTTTTC-CCCEEEECTT-CCEECTTTTTT-CC
T ss_pred cccccccCCEEEEeCC-CccChHHHHhhCCCCCCEEEeCCc-ceEechhhhcCC-CCceEECCce-eeEeccceecc-CC
Confidence 3455667888888865 355455677889999999999764 555556677776 6888877654 33233344554 47
Q ss_pred CCEeecCCCcccccCCccccCCCCCCEEEccCCcccccCcccccCCCCCcEEEcccccCCccCCccccCCCCCCEEECcC
Q 047332 305 LSALGLHINQLSGVIPSSIGNLSSLRALYLYNNGLCGFVPEEIRYLKSLSELELCKNHLSGVIPHSIGNLTGLLLLNMCE 384 (614)
Q Consensus 305 L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~ls~ 384 (614)
|+.+.+..+ ++.....+|..+ .++.+.+..+ +.......+..+..++.+.+..+.........+.. ..
T Consensus 115 L~~i~lp~~-~~~i~~~~F~~~-~l~~~~~~~~-v~~i~~~~f~~~~~l~~~~~~~~~~~~~~~~~~~~---------~~ 182 (379)
T 4h09_A 115 LDDFEFPGA-TTEIGNYIFYNS-SVKRIVIPKS-VTTIKDGIGYKAENLEKIEVSSNNKNYVAENYVLY---------NK 182 (379)
T ss_dssp CSEEECCTT-CCEECTTTTTTC-CCCEEEECTT-CCEECSCTTTTCTTCCEEEECTTCSSEEEETTEEE---------ET
T ss_pred cccccCCCc-cccccccccccc-eeeeeeccce-eeccccchhcccccccccccccccceeecccceec---------cc
Confidence 999988764 333444556554 5666666543 44445566778888888877655432111100000 00
Q ss_pred CCCCCCCCccccCCCCCcEEEccCCcCCcccccccCCCCCCCEEECcCcccccccCccccCCCCCcEEEcccCcccccCC
Q 047332 385 NHLSGPIPKSFKNLTSVERVLLNQNNLSGKVYEAFGDHPNLTFLNLSQNNFCGEISFNWRNFPKLGTFIVSVNNISGSIP 464 (614)
Q Consensus 385 n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~ 464 (614)
.......+..+..+..+.+.... .......+..+..++.+.+..+ +.......+.++..|+.+.+..+ ++..-.
T Consensus 183 ---~~~~~~~~~~~~~~~~~~~~~~~-~~i~~~~f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~ 256 (379)
T 4h09_A 183 ---NKTILESYPAAKTGTEFTIPSTV-KTVTAYGFSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGS 256 (379)
T ss_dssp ---TSSEEEECCTTCCCSEEECCTTC-CEECTTTTTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECT
T ss_pred ---ccceeccccccccccccccccce-eEEeecccccccccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCc
Confidence 00111223344444444443321 1123334445556666655432 22233344555666666665543 222233
Q ss_pred ccCCCCCCCCEEeCCCCcCccccchhccCCCCCCEeeccCCccccCccccccCCCCCCEEeCCCCcCcccCCccccccCC
Q 047332 465 PEIGDSPKLQVLDLSSNSIVGEIPVQLGKLFSLNKLILNLNQLSGGMPLELGSLTELQYLDLSANKLKSSIPKSIGNLLR 544 (614)
Q Consensus 465 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~l~~l~~ 544 (614)
.++..+..|+.+.+..+ +.......|..|.+|+.+.+.++.+......+|.+|.+|+.++|..+ +..+...+|.+|++
T Consensus 257 ~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~ 334 (379)
T 4h09_A 257 FLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKA 334 (379)
T ss_dssp TTTTTCTTCCEEEECCC-CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTT
T ss_pred cccceeehhcccccccc-ceeccccccccccccccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCC
Confidence 44555666666666443 22223345666667777777666665445566677777777777543 44444556667777
Q ss_pred CCEEeCCCCcCCcCCChhhhcC
Q 047332 545 LRYLDLSNNQFGHKIPIELEKL 566 (614)
Q Consensus 545 L~~L~l~~n~~~~~~p~~l~~l 566 (614)
|+.+.+..+ ++.....+|.++
T Consensus 335 L~~i~ip~~-v~~I~~~aF~~c 355 (379)
T 4h09_A 335 LSTISYPKS-ITLIESGAFEGS 355 (379)
T ss_dssp CCCCCCCTT-CCEECTTTTTTS
T ss_pred CCEEEECCc-cCEEchhHhhCC
Confidence 777766543 444444555554
No 151
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.17 E-value=9e-11 Score=117.56 Aligned_cols=104 Identities=25% Similarity=0.178 Sum_probs=78.3
Q ss_pred EEeCCCC-cCccccchhccCCCCCCEeeccC-CccccCccccccCCCCCCEEeCCCCcCcccCCccccccCCCCEEeCCC
Q 047332 475 VLDLSSN-SIVGEIPVQLGKLFSLNKLILNL-NQLSGGMPLELGSLTELQYLDLSANKLKSSIPKSIGNLLRLRYLDLSN 552 (614)
Q Consensus 475 ~L~l~~~-~~~~~~~~~~~~~~~L~~L~l~~-n~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~l~~ 552 (614)
.++++++ .++ .+|. +..+++|++|+|++ |.+.+..+..|.++++|+.|+|++|.+.+..|..|..+++|+.|+|++
T Consensus 12 ~v~~~~~n~l~-~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~ 89 (347)
T 2ifg_A 12 GLRCTRDGALD-SLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSF 89 (347)
T ss_dssp CEECCSSCCCT-TTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCS
T ss_pred EEEcCCCCCCC-ccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCC
Confidence 4577776 666 5666 77777888888885 788776667788888888888888888877777778888888888888
Q ss_pred CcCCcCCChhhhcCCCCCeeeCCCCCCCC
Q 047332 553 NQFGHKIPIELEKLIHLSELDLSYNFLGE 581 (614)
Q Consensus 553 n~~~~~~p~~l~~l~~L~~L~L~~n~~~~ 581 (614)
|++++..+..+..++ |+.|+|.+|++..
T Consensus 90 N~l~~~~~~~~~~~~-L~~l~l~~N~~~c 117 (347)
T 2ifg_A 90 NALESLSWKTVQGLS-LQELVLSGNPLHC 117 (347)
T ss_dssp SCCSCCCSTTTCSCC-CCEEECCSSCCCC
T ss_pred CccceeCHHHcccCC-ceEEEeeCCCccC
Confidence 888766655665555 8888888887754
No 152
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.12 E-value=2.2e-10 Score=114.73 Aligned_cols=106 Identities=22% Similarity=0.152 Sum_probs=92.6
Q ss_pred cEEEcccC-cccccCCccCCCCCCCCEEeCCC-CcCccccchhccCCCCCCEeeccCCccccCccccccCCCCCCEEeCC
Q 047332 450 GTFIVSVN-NISGSIPPEIGDSPKLQVLDLSS-NSIVGEIPVQLGKLFSLNKLILNLNQLSGGMPLELGSLTELQYLDLS 527 (614)
Q Consensus 450 ~~L~l~~~-~~~~~~~~~~~~~~~L~~L~l~~-~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~ls 527 (614)
..++.+++ .++ .+|. +..+++|++|+|++ |.+.+..+..|..+++|+.|+|++|.+++..|..|.++++|+.|+|+
T Consensus 11 ~~v~~~~~n~l~-~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~ 88 (347)
T 2ifg_A 11 SGLRCTRDGALD-SLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLS 88 (347)
T ss_dssp SCEECCSSCCCT-TTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECC
T ss_pred CEEEcCCCCCCC-ccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCC
Confidence 35678887 776 5788 99999999999996 99997777889999999999999999999888899999999999999
Q ss_pred CCcCcccCCccccccCCCCEEeCCCCcCCcC
Q 047332 528 ANKLKSSIPKSIGNLLRLRYLDLSNNQFGHK 558 (614)
Q Consensus 528 ~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~ 558 (614)
+|.+.+..+..+..++ |+.|++.+|++...
T Consensus 89 ~N~l~~~~~~~~~~~~-L~~l~l~~N~~~c~ 118 (347)
T 2ifg_A 89 FNALESLSWKTVQGLS-LQELVLSGNPLHCS 118 (347)
T ss_dssp SSCCSCCCSTTTCSCC-CCEEECCSSCCCCC
T ss_pred CCccceeCHHHcccCC-ceEEEeeCCCccCC
Confidence 9999976666666665 99999999999754
No 153
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.88 E-value=4.7e-10 Score=111.65 Aligned_cols=65 Identities=18% Similarity=0.349 Sum_probs=33.8
Q ss_pred CCCCCCEEeCCCCcCcccCCcccc---ccCCCCEEeCCCCcCCcCC----ChhhhcCCCCCeeeCCCCCCCC
Q 047332 517 SLTELQYLDLSANKLKSSIPKSIG---NLLRLRYLDLSNNQFGHKI----PIELEKLIHLSELDLSYNFLGE 581 (614)
Q Consensus 517 ~l~~L~~L~ls~n~l~~~~~~~l~---~l~~L~~L~l~~n~~~~~~----p~~l~~l~~L~~L~L~~n~~~~ 581 (614)
.+++|+.|++++|.+.+..+..+. .+++|++|+|+.|.+.+.. +..+..+++|+.|+|++|.++.
T Consensus 250 ~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d 321 (362)
T 2ra8_A 250 RFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSD 321 (362)
T ss_dssp TCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCH
T ss_pred CCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCH
Confidence 355666666666655533222222 3556666666666665432 2223445666666666665543
No 154
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.87 E-value=5.5e-10 Score=111.17 Aligned_cols=205 Identities=13% Similarity=0.121 Sum_probs=100.6
Q ss_pred CCCEEEEEcCCCCCCc-cc-------CcccccCCCCCcEEECCCCCCC---------ccCcccccCCCCCCEEeCCCCCC
Q 047332 61 AGRVISINLSSMALNG-TL-------QEFAFSSFPHLVQLNLSFNIFF---------GIIPPQIGNLSKLQYLDLGSNQL 123 (614)
Q Consensus 61 ~~~v~~l~l~~~~l~~-~~-------~~~~~~~l~~L~~L~Ls~~~~~---------~~~~~~l~~l~~L~~L~Ls~n~l 123 (614)
..+|+.|.+....+.| .. .. ++..+++|+.|.+...... +.+...+..+++|+.|+|+++.-
T Consensus 106 ~~~v~~L~lg~~~~~~~~~~~~~~~L~~-s~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~ 184 (362)
T 2ra8_A 106 LPSLKQITIGXWGYEGEDCSDIADGIVE-NKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNN 184 (362)
T ss_dssp GGGCSEEEECCCCSSSCCSHHHHHHHHT-THHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBT
T ss_pred chhcceEEEcccccCCCcHHHHHHHHHH-hhhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCC
Confidence 3467788877665543 21 12 4556788888888654321 12334455667777777776521
Q ss_pred CCCCCcCCCCCCCCCEEEcccccCCCCCCcccc--CCCCCcEEEeccc--cCCCCCCcccCCCCCCcEEEeecCCCcccC
Q 047332 124 SGVIPPEIGHLNQLRILYFDVNQLHGSIPPEIG--QLSLINVLALCHN--NLYGSIPSSLGNLSNLANFYFNNNSLFDSI 199 (614)
Q Consensus 124 ~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~--~l~~L~~L~l~~~--~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~ 199 (614)
. .++. + .+++|++|++..+.+.......+. .+++|++|+|+.+ ...+... + ..+
T Consensus 185 l-~l~~-~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~--~-----------------~~l 242 (362)
T 2ra8_A 185 L-SIGK-K-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGD--M-----------------NVF 242 (362)
T ss_dssp C-BCCS-C-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSC--G-----------------GGT
T ss_pred c-eecc-c-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchh--H-----------------HHH
Confidence 1 2222 3 266777777766654422222222 5666666666421 1111000 0 000
Q ss_pred Cccc--cCCCCCCeeeccCccCCccCCccc---cCCCCCCeEEcccCccccc----cchhccCCCCCCEEeccCCcCccc
Q 047332 200 PLVL--GNLNSLSTMDLSQNQFSGSIPLSL---GNLSNLGILYLYSNSFSGS----IPSIIGNLKSLLQLDLSENQLIGS 270 (614)
Q Consensus 200 ~~~l--~~l~~L~~L~l~~~~~~~~~~~~l---~~l~~L~~L~L~~~~~~~~----~~~~l~~l~~L~~L~L~~n~~~~~ 270 (614)
...+ ..+++|++|++.+|.+.+..+..+ ..+++|++|+|+.|.+.+. ++..+..+++|+.|++++|.++..
T Consensus 243 ~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~ 322 (362)
T 2ra8_A 243 RPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDE 322 (362)
T ss_dssp GGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHH
T ss_pred HHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHH
Confidence 0011 234556666665555542221111 1345666666666666543 222234456777777777765543
Q ss_pred cCccccC-CCCCCEEecCCCc
Q 047332 271 IPLSFGN-LSRLTLMSLFNNL 290 (614)
Q Consensus 271 ~~~~l~~-l~~L~~L~L~~~~ 290 (614)
.-..+.. + ...++++++.
T Consensus 323 ~~~~l~~al--g~~~~~~~~~ 341 (362)
T 2ra8_A 323 MKKELQKSL--PMKIDVSDSQ 341 (362)
T ss_dssp HHHHHHHHC--CSEEECCSBC
T ss_pred HHHHHHHHc--CCEEEecCCc
Confidence 3222222 1 2446666554
No 155
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.62 E-value=7.9e-09 Score=92.76 Aligned_cols=113 Identities=16% Similarity=0.183 Sum_probs=51.6
Q ss_pred CCCCCCCCEEeCCCC-cCccc----cchhccCCCCCCEeeccCCccccC----ccccccCCCCCCEEeCCCCcCccc---
Q 047332 467 IGDSPKLQVLDLSSN-SIVGE----IPVQLGKLFSLNKLILNLNQLSGG----MPLELGSLTELQYLDLSANKLKSS--- 534 (614)
Q Consensus 467 ~~~~~~L~~L~l~~~-~~~~~----~~~~~~~~~~L~~L~l~~n~~~~~----~~~~~~~l~~L~~L~ls~n~l~~~--- 534 (614)
+...+.|++|++++| .+... +...+...++|++|+|++|.+... +...+...++|++|+|++|.+.+.
T Consensus 32 l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~ 111 (185)
T 1io0_A 32 QNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGIL 111 (185)
T ss_dssp HTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHH
T ss_pred HhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHH
Confidence 444555666666665 55421 223334445555555555555421 222333444555555555555432
Q ss_pred -CCccccccCCCCEEeC--CCCcCCcCC----ChhhhcCCCCCeeeCCCCCC
Q 047332 535 -IPKSIGNLLRLRYLDL--SNNQFGHKI----PIELEKLIHLSELDLSYNFL 579 (614)
Q Consensus 535 -~~~~l~~l~~L~~L~l--~~n~~~~~~----p~~l~~l~~L~~L~L~~n~~ 579 (614)
+.+.+...++|++|++ ++|.+.... ...+...++|++|+|++|.+
T Consensus 112 ~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i 163 (185)
T 1io0_A 112 ALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQ 163 (185)
T ss_dssp HHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSH
T ss_pred HHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCC
Confidence 2233444445555555 445553321 12233334455555555543
No 156
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.59 E-value=2e-08 Score=90.11 Aligned_cols=117 Identities=15% Similarity=0.096 Sum_probs=64.9
Q ss_pred chhccCCCCCCEeeccCC-ccccC----ccccccCCCCCCEEeCCCCcCccc----CCccccccCCCCEEeCCCCcCCcC
Q 047332 488 PVQLGKLFSLNKLILNLN-QLSGG----MPLELGSLTELQYLDLSANKLKSS----IPKSIGNLLRLRYLDLSNNQFGHK 558 (614)
Q Consensus 488 ~~~~~~~~~L~~L~l~~n-~~~~~----~~~~~~~l~~L~~L~ls~n~l~~~----~~~~l~~l~~L~~L~l~~n~~~~~ 558 (614)
...+...+.|++|+|++| .+... +...+...++|++|+|++|.+.+. +.+.+...++|++|+|++|.+.+.
T Consensus 29 ~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~ 108 (185)
T 1io0_A 29 KRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGS 108 (185)
T ss_dssp HHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHH
T ss_pred HHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHH
Confidence 344555666666666666 55432 233445556666666666666542 223344446666666666666543
Q ss_pred ----CChhhhcCCCCCeeeC--CCCCCCCC----CCccccCCCCCCeEECcCCCCc
Q 047332 559 ----IPIELEKLIHLSELDL--SYNFLGEE----IPFQICNVKSLEKLNLCHNNLL 604 (614)
Q Consensus 559 ----~p~~l~~l~~L~~L~L--~~n~~~~~----~p~~l~~l~sL~~L~l~~n~l~ 604 (614)
+...+...++|++|+| ++|.+... +...+...++|++|++++|.+.
T Consensus 109 g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 109 GILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp HHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred HHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence 2334455566666666 56666443 2233344566666666666653
No 157
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.34 E-value=7.6e-08 Score=90.64 Aligned_cols=80 Identities=29% Similarity=0.328 Sum_probs=43.6
Q ss_pred cCCCCCCEEeCCCCcCcc--cCCccccccCCCCEEeCCCCcCCcCCChhhhcCC--CCCeeeCCCCCCCCCCCc------
Q 047332 516 GSLTELQYLDLSANKLKS--SIPKSIGNLLRLRYLDLSNNQFGHKIPIELEKLI--HLSELDLSYNFLGEEIPF------ 585 (614)
Q Consensus 516 ~~l~~L~~L~ls~n~l~~--~~~~~l~~l~~L~~L~l~~n~~~~~~p~~l~~l~--~L~~L~L~~n~~~~~~p~------ 585 (614)
..+++|+.|+|++|.+.+ .+|..+..+++|+.|+|++|.+++. ..+..+. +|++|+|++|++.+.+|.
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~ 244 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFRDQSTYIS 244 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHH
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccCcchhHHH
Confidence 345566666666666654 2334455566666666666666543 2223222 666666666666554441
Q ss_pred -cccCCCCCCeEE
Q 047332 586 -QICNVKSLEKLN 597 (614)
Q Consensus 586 -~l~~l~sL~~L~ 597 (614)
.+..+++|+.||
T Consensus 245 ~il~~~P~L~~LD 257 (267)
T 3rw6_A 245 AIRERFPKLLRLD 257 (267)
T ss_dssp HHHHHCTTCCEES
T ss_pred HHHHHCcccCeEC
Confidence 234556666654
No 158
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.33 E-value=6.5e-08 Score=84.29 Aligned_cols=85 Identities=12% Similarity=0.028 Sum_probs=56.1
Q ss_pred CCCCEeeccCCccccCccccccCCCCCCEEeCCCCc-CcccCCcccccc----CCCCEEeCCCCc-CCcCCChhhhcCCC
Q 047332 495 FSLNKLILNLNQLSGGMPLELGSLTELQYLDLSANK-LKSSIPKSIGNL----LRLRYLDLSNNQ-FGHKIPIELEKLIH 568 (614)
Q Consensus 495 ~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~ls~n~-l~~~~~~~l~~l----~~L~~L~l~~n~-~~~~~p~~l~~l~~ 568 (614)
..|++|++++|.++..-...+.+|++|+.|+|++|. +++..-..+..+ ++|++|+|++|. +++..-..+..+++
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~ 140 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRN 140 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTT
T ss_pred ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCC
Confidence 467777777777765555556777777777777774 554433444443 367777777764 66655566667777
Q ss_pred CCeeeCCCCCC
Q 047332 569 LSELDLSYNFL 579 (614)
Q Consensus 569 L~~L~L~~n~~ 579 (614)
|++|+|++|.-
T Consensus 141 L~~L~L~~c~~ 151 (176)
T 3e4g_A 141 LKYLFLSDLPG 151 (176)
T ss_dssp CCEEEEESCTT
T ss_pred CCEEECCCCCC
Confidence 77777777753
No 159
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.29 E-value=1.6e-07 Score=88.34 Aligned_cols=81 Identities=27% Similarity=0.271 Sum_probs=61.1
Q ss_pred cCCCCCCEeeccCCccccC--ccccccCCCCCCEEeCCCCcCcccCCccccccC--CCCEEeCCCCcCCcCCC-------
Q 047332 492 GKLFSLNKLILNLNQLSGG--MPLELGSLTELQYLDLSANKLKSSIPKSIGNLL--RLRYLDLSNNQFGHKIP------- 560 (614)
Q Consensus 492 ~~~~~L~~L~l~~n~~~~~--~~~~~~~l~~L~~L~ls~n~l~~~~~~~l~~l~--~L~~L~l~~n~~~~~~p------- 560 (614)
..++.|++|+|++|.+++. ++..+..+++|+.|+|++|.+.+. ..+..+. +|++|++++|++.+.+|
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~ 244 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFRDQSTYIS 244 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHH
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccCcchhHHH
Confidence 4677888888888888863 445667888899999999988864 3455555 89999999999887655
Q ss_pred hhhhcCCCCCeeeC
Q 047332 561 IELEKLIHLSELDL 574 (614)
Q Consensus 561 ~~l~~l~~L~~L~L 574 (614)
..+..+++|+.||=
T Consensus 245 ~il~~~P~L~~LDg 258 (267)
T 3rw6_A 245 AIRERFPKLLRLDG 258 (267)
T ss_dssp HHHHHCTTCCEESS
T ss_pred HHHHHCcccCeECC
Confidence 24677888888863
No 160
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.24 E-value=2e-07 Score=81.14 Aligned_cols=84 Identities=18% Similarity=0.188 Sum_probs=52.1
Q ss_pred CCCCEEeCCCCcCccccchhccCCCCCCEeeccCCc-cccCccccccCC----CCCCEEeCCCCc-CcccCCccccccCC
Q 047332 471 PKLQVLDLSSNSIVGEIPVQLGKLFSLNKLILNLNQ-LSGGMPLELGSL----TELQYLDLSANK-LKSSIPKSIGNLLR 544 (614)
Q Consensus 471 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~-~~~~~~~~~~~l----~~L~~L~ls~n~-l~~~~~~~l~~l~~ 544 (614)
..|+.||+++|.+++.-...+..+++|++|+|++|. ++..-...+..+ ++|++|++++|. +++..-..+..+++
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~ 140 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRN 140 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTT
T ss_pred ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCC
Confidence 457777777777665555556677777777777774 443333334432 357777777764 65544455666777
Q ss_pred CCEEeCCCCc
Q 047332 545 LRYLDLSNNQ 554 (614)
Q Consensus 545 L~~L~l~~n~ 554 (614)
|++|++++|+
T Consensus 141 L~~L~L~~c~ 150 (176)
T 3e4g_A 141 LKYLFLSDLP 150 (176)
T ss_dssp CCEEEEESCT
T ss_pred CCEEECCCCC
Confidence 7777777765
No 161
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.44 E-value=4.7e-05 Score=67.55 Aligned_cols=63 Identities=13% Similarity=0.102 Sum_probs=28.1
Q ss_pred ccCCCCCCEEeCCCCcCcccC----CccccccCCCCEEeCCCCcCCcCCC----hhhhcCCCCCeeeCCCC
Q 047332 515 LGSLTELQYLDLSANKLKSSI----PKSIGNLLRLRYLDLSNNQFGHKIP----IELEKLIHLSELDLSYN 577 (614)
Q Consensus 515 ~~~l~~L~~L~ls~n~l~~~~----~~~l~~l~~L~~L~l~~n~~~~~~p----~~l~~l~~L~~L~L~~n 577 (614)
+..-+.|+.|+|++|.+.+.. .+.+..-+.|++|+|++|.|.+..- +.+..-+.|++|+|++|
T Consensus 66 L~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~ 136 (197)
T 1pgv_A 66 ACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQ 136 (197)
T ss_dssp HTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCC
T ss_pred HhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHHHHHhhCCceeEEECCCC
Confidence 344445555555555554321 1223334455555555555543221 22333344555555543
No 162
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.34 E-value=0.00012 Score=64.90 Aligned_cols=108 Identities=13% Similarity=0.173 Sum_probs=51.2
Q ss_pred CCCCEEeCCCC-cCcc----ccchhccCCCCCCEeeccCCccccC----ccccccCCCCCCEEeCCCCcCccc----CCc
Q 047332 471 PKLQVLDLSSN-SIVG----EIPVQLGKLFSLNKLILNLNQLSGG----MPLELGSLTELQYLDLSANKLKSS----IPK 537 (614)
Q Consensus 471 ~~L~~L~l~~~-~~~~----~~~~~~~~~~~L~~L~l~~n~~~~~----~~~~~~~l~~L~~L~ls~n~l~~~----~~~ 537 (614)
+.|++|+|+++ .+.. .+...+..-..|++|+|++|.+... +.+.+..-+.|++|+|+.|.|.+. +.+
T Consensus 41 ~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala~ 120 (197)
T 1pgv_A 41 TDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLR 120 (197)
T ss_dssp SSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHH
T ss_pred CCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHHH
Confidence 44555555543 3331 1223344445555555555555422 223334445566666666665532 222
Q ss_pred cccccCCCCEEeCCCC---cCCcC----CChhhhcCCCCCeeeCCCCC
Q 047332 538 SIGNLLRLRYLDLSNN---QFGHK----IPIELEKLIHLSELDLSYNF 578 (614)
Q Consensus 538 ~l~~l~~L~~L~l~~n---~~~~~----~p~~l~~l~~L~~L~L~~n~ 578 (614)
.+..-+.|++|+|++| .+... +-..+..-++|..|+++.|.
T Consensus 121 aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~ 168 (197)
T 1pgv_A 121 STLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFAS 168 (197)
T ss_dssp HTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCC
T ss_pred HHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCC
Confidence 3444455666666543 22221 22334445566666665553
No 163
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.67 E-value=0.003 Score=52.19 Aligned_cols=56 Identities=23% Similarity=0.225 Sum_probs=41.2
Q ss_pred CEEeCCCCcCc-ccCCccccccCCCCEEeCCCCcCCcCCChhhhcCCCCCeeeCCCCCC
Q 047332 522 QYLDLSANKLK-SSIPKSIGNLLRLRYLDLSNNQFGHKIPIELEKLIHLSELDLSYNFL 579 (614)
Q Consensus 522 ~~L~ls~n~l~-~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~L~~n~~ 579 (614)
..++.+++.++ ..+|..+ .++|+.|+|++|+++...+..|..+++|+.|+|++|++
T Consensus 11 ~~v~Cs~~~L~~~~vP~~l--p~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~ 67 (130)
T 3rfe_A 11 TLVDCGRRGLTWASLPTAF--PVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPW 67 (130)
T ss_dssp TEEECCSSCCCTTTSCSCC--CTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCC
T ss_pred CEEEeCCCCCccccCCCCC--CcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCe
Confidence 47788888775 3455443 24688888888888776667778888888888888866
No 164
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.37 E-value=0.007 Score=49.92 Aligned_cols=56 Identities=21% Similarity=0.258 Sum_probs=33.3
Q ss_pred EeeccCCccc-cCccccccCCCCCCEEeCCCCcCcccCCccccccCCCCEEeCCCCcCC
Q 047332 499 KLILNLNQLS-GGMPLELGSLTELQYLDLSANKLKSSIPKSIGNLLRLRYLDLSNNQFG 556 (614)
Q Consensus 499 ~L~l~~n~~~-~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~l~~n~~~ 556 (614)
.++.+++.++ ..+|..+. ++|+.|+|++|.|+...+..|..+++|+.|+|.+|++.
T Consensus 12 ~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp EEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred EEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence 4555555554 23443332 35677777777776555555666777777777777663
No 165
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=67.88 E-value=14 Score=28.12 Aligned_cols=44 Identities=9% Similarity=0.081 Sum_probs=20.5
Q ss_pred CccCcccccCCCCCCEEeCCCCCCCCCCCcCCCCCCCCCEEEccc
Q 047332 100 FGIIPPQIGNLSKLQYLDLGSNQLSGVIPPEIGHLNQLRILYFDV 144 (614)
Q Consensus 100 ~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~l~~ 144 (614)
+.+-..+|.+|.+|+.+.|..+ ++.+-..+|.+|.+|+.+.+..
T Consensus 9 t~I~~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~ 52 (100)
T 2lz0_A 9 VGMDKSLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTG 52 (100)
T ss_dssp CSSCSCTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECC
T ss_pred CEecHHHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcC
Confidence 3333344555555555555443 2223334455555555555543
No 166
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=63.54 E-value=21 Score=27.19 Aligned_cols=46 Identities=11% Similarity=0.034 Sum_probs=29.1
Q ss_pred CCCCCCcCCCCCCCCCEEEcccccCCCCCCccccCCCCCcEEEeccc
Q 047332 123 LSGVIPPEIGHLNQLRILYFDVNQLHGSIPPEIGQLSLINVLALCHN 169 (614)
Q Consensus 123 l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~ 169 (614)
++.+-..+|.+|.+|+.+.+..+ ++.+-..+|.+|.+|+.+.+.+.
T Consensus 8 vt~I~~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~~ 53 (100)
T 2lz0_A 8 VVGMDKSLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTGE 53 (100)
T ss_dssp CCSSCSCTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECCS
T ss_pred cCEecHHHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcCC
Confidence 44444456777777777777765 44344556677777777776553
Done!