Query 047334
Match_columns 364
No_of_seqs 280 out of 1206
Neff 3.8
Searched_HMMs 29240
Date Mon Mar 25 17:44:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047334.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/047334hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1gcc_A Ethylene responsive ele 99.9 8.8E-25 3E-29 167.2 6.5 63 208-270 1-63 (63)
2 3igm_B PF14_0633 protein; AP2 92.0 0.088 3E-06 42.0 2.8 24 205-228 3-27 (77)
3 1u3e_M HNH homing endonuclease 78.4 0.35 1.2E-05 41.9 -0.5 38 210-251 109-146 (174)
4 1z1b_A Integrase; protein-DNA 74.7 3.7 0.00013 37.1 5.2 42 211-257 14-55 (356)
5 3jtz_A Integrase; four strande 48.4 32 0.0011 27.0 5.5 44 213-257 28-75 (88)
6 2dgx_A KIAA0430 protein; RRM d 27.5 90 0.0031 23.2 4.8 44 1-44 16-60 (96)
7 2yy0_A C-MYC-binding protein; 27.5 13 0.00044 27.2 0.0 10 63-72 2-11 (53)
8 1b69_A Protein (integrase); in 25.7 81 0.0028 24.4 4.2 27 207-235 9-35 (69)
9 3ju0_A Phage integrase; four s 25.1 1E+02 0.0036 25.0 5.1 44 213-257 28-75 (108)
10 1x60_A Sporulation-specific N- 23.9 52 0.0018 24.2 2.8 23 233-255 46-68 (79)
No 1
>1gcc_A Ethylene responsive element binding factor 1; transcription factor, protein-DNA complex, ethylene inducible; HET: DNA; NMR {Arabidopsis thaliana} SCOP: d.10.1.2 PDB: 2gcc_A 3gcc_A
Probab=99.91 E-value=8.8e-25 Score=167.17 Aligned_cols=63 Identities=75% Similarity=1.350 Sum_probs=59.7
Q ss_pred CceeeeEEcCCCceEEEEecCCCCCeEEeecCCCCHHHHHHHHHHHHHHhcCCCCCCCCCCCc
Q 047334 208 KHYRGVRRRPWGKYAAEIRDPTRRGVRVWLGTFDTAIEAARAYDRAAFQLRGSKAILNFPLEA 270 (364)
Q Consensus 208 SgYRGV~~r~~GKW~A~I~~~~k~Gkrv~LGtFdT~EEAArAYD~AA~k~~G~~A~lNFP~~~ 270 (364)
.+||||+++++|||+|+|+++.++|+++|||+|+|+||||+|||.|+++++|.+|.+|||.++
T Consensus 1 ~~yrGV~~r~~gkw~A~I~~~~~~g~r~~LGtf~T~eeAA~AyD~Aa~~~~G~~a~~NFp~~~ 63 (63)
T 1gcc_A 1 KHYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAFRMRGSRALLNFPLRV 63 (63)
T ss_dssp CCCTTEEEETTTEEEEEEEETTTTSEEEEEEEESSHHHHHHHHHHHHHHHHSSCCCCSSCTTC
T ss_pred CCcccEeeCCCCcEEEEEccccCCCeEEEeeeCCCHHHHHHHHHHHHHHhcCcccccCCCCcC
Confidence 379999999999999999999888999999999999999999999999999999999999863
No 2
>3igm_B PF14_0633 protein; AP2 domain, specific transcription FA protein-DNA complex, transcription-DNA complex; 2.20A {Plasmodium falciparum}
Probab=91.97 E-value=0.088 Score=42.00 Aligned_cols=24 Identities=21% Similarity=0.166 Sum_probs=20.5
Q ss_pred CCCCceeeeEEcC-CCceEEEEecC
Q 047334 205 SEEKHYRGVRRRP-WGKYAAEIRDP 228 (364)
Q Consensus 205 ~ntSgYRGV~~r~-~GKW~A~I~~~ 228 (364)
..+|+|+||+|.+ .+.|.|.-.+.
T Consensus 3 ~~~Sg~pGVsw~kR~~~WlA~W~e~ 27 (77)
T 3igm_B 3 HMSSGYPGVSWNKRMCAWLAFFYDG 27 (77)
T ss_dssp -CCSSSTTEEEETTTTEEEEEEEET
T ss_pred CCCCCCCcEEeecCCceEEEEEecC
Confidence 4579999999888 69999999984
No 3
>1u3e_M HNH homing endonuclease; HNH catalytic motif, helix-turn-helix DNA binding domain, PR complex, DNA binding protein-DNA complex; 2.92A {Bacillus phage SPO1} SCOP: d.4.1.3 d.285.1.1
Probab=78.40 E-value=0.35 Score=41.93 Aligned_cols=38 Identities=5% Similarity=-0.143 Sum_probs=29.3
Q ss_pred eeeeEEcCCCceEEEEecCCCCCeEEeecCCCCHHHHHHHHH
Q 047334 210 YRGVRRRPWGKYAAEIRDPTRRGVRVWLGTFDTAIEAARAYD 251 (364)
Q Consensus 210 YRGV~~r~~GKW~A~I~~~~k~Gkrv~LGtFdT~EEAArAYD 251 (364)
++||.+...++|.+.|... +..+||.|+|.+|||++|.
T Consensus 109 ~~g~~~~~~~k~~~vi~~~----~~~~~~~f~s~~eAa~~~G 146 (174)
T 1u3e_M 109 SKAQQIAKIKNQKPIIVIS----PDGIEKEYPSTKCACEELG 146 (174)
T ss_dssp HHHHHHHHHHTCCCEEEEC----TTSCEEEESCHHHHHHHHT
T ss_pred eeeeeeccCCCCceEEEEc----CCceEEeeCCHHHHHHHHC
Confidence 4677653357799999883 3467999999999999964
No 4
>1z1b_A Integrase; protein-DNA complex, DNA binding protein/DNA complex; HET: PTR; 3.80A {Enterobacteria phage lambda} SCOP: d.10.1.4 d.163.1.1 PDB: 1z1g_A 1kjk_A 2wcc_3*
Probab=74.69 E-value=3.7 Score=37.06 Aligned_cols=42 Identities=21% Similarity=0.120 Sum_probs=31.6
Q ss_pred eeeEEcCCCceEEEEecCCCCCeEEeecCCCCHHHHHHHHHHHHHHh
Q 047334 211 RGVRRRPWGKYAAEIRDPTRRGVRVWLGTFDTAIEAARAYDRAAFQL 257 (364)
Q Consensus 211 RGV~~r~~GKW~A~I~~~~k~Gkrv~LGtFdT~EEAArAYD~AA~k~ 257 (364)
.||++++.|.|+.+... +|+++.+|. |..||..+...+...+
T Consensus 14 ~~v~~~~~g~~~~r~~~---~gk~~~~g~--t~~eA~~~a~~~~~~~ 55 (356)
T 1z1b_A 14 PNLYIRNNGYYCYRDPR---TGKEFGLGR--DRRIAITEAIQANIEL 55 (356)
T ss_dssp TTEEEETTTEEEEECTT---TCCEEEEES--CHHHHHHHHHHHHHHH
T ss_pred ccceecCCCeEEEEeec---CCeEEECCC--CHHHHHHHHHHHHHHH
Confidence 36877778999988765 678899996 8888877766655444
No 5
>3jtz_A Integrase; four stranded beta-sheet, DNA binding protein; 1.30A {Yersinia pestis} PDB: 3rmp_A
Probab=48.44 E-value=32 Score=26.99 Aligned_cols=44 Identities=18% Similarity=0.272 Sum_probs=30.1
Q ss_pred eEEcCCC--ceEEEEecCCCCCeEEeecCCC--CHHHHHHHHHHHHHHh
Q 047334 213 VRRRPWG--KYAAEIRDPTRRGVRVWLGTFD--TAIEAARAYDRAAFQL 257 (364)
Q Consensus 213 V~~r~~G--KW~A~I~~~~k~Gkrv~LGtFd--T~EEAArAYD~AA~k~ 257 (364)
++..+.| .|+-+.+..++ -+++-||.|. |..+|....+++...+
T Consensus 28 L~V~psG~K~w~~ryr~~Gk-~~~~~LG~yp~~sL~~AR~~a~~~r~~l 75 (88)
T 3jtz_A 28 LLVKPGGSRHWYLKYRISGK-ESRIALGAYPAISLSDARQQREGIRKML 75 (88)
T ss_dssp EEECTTSCEEEEEEEEETTE-EEEEEEEETTTSCHHHHHHHHHHHHHHH
T ss_pred EEEecCCCEEEEEEEEeCCe-EEEEEeECCCCCCHHHHHHHHHHHHHHH
Confidence 4455544 48888887433 3678999997 4788877777666554
No 6
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=27.51 E-value=90 Score=23.24 Aligned_cols=44 Identities=18% Similarity=0.150 Sum_probs=28.6
Q ss_pred CCCcccccchhhHHHHHHHHhhheeEEEeeeeecc-cceEEEEec
Q 047334 1 NLPSCIIEGPLKSQLLRIAEAYISVVRVNLIQHTQ-NSSIFLRFK 44 (364)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 44 (364)
|||.-+-|.-|+.-|.++-+.|=.|+.|.++.... ..--|+.|.
T Consensus 16 nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~rg~afV~f~ 60 (96)
T 2dgx_A 16 NIDYRLSRKELQQLLQEAFARHGKVKSVELSPHTDYQLKAVVQME 60 (96)
T ss_dssp SCCTTSCHHHHHHHHHHHHHHHSCEEEEEECSCCSTTCCEEEEES
T ss_pred CCCCCCCHHHHHHHHHHhccccCcEEEEEEEeCCCCCeEEEEEEC
Confidence 56766666666655668888998899998875433 223444443
No 7
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=27.46 E-value=13 Score=27.24 Aligned_cols=10 Identities=60% Similarity=1.115 Sum_probs=0.0
Q ss_pred chHHHHHhhh
Q 047334 63 SALEFIEQHL 72 (364)
Q Consensus 63 SaL~~I~~hL 72 (364)
.||+||+|||
T Consensus 2 ~AlefIk~~L 11 (53)
T 2yy0_A 2 SALDFLKHHL 11 (53)
T ss_dssp ----------
T ss_pred cHHHHHHHHc
Confidence 4889999998
No 8
>1b69_A Protein (integrase); integrase, DNA binding, transposition, complex, beta-sheet recognition; HET: DNA; NMR {Enterococcus faecalis} SCOP: d.10.1.1 PDB: 1tn9_A* 1bb8_A 2bb8_A
Probab=25.73 E-value=81 Score=24.42 Aligned_cols=27 Identities=22% Similarity=0.187 Sum_probs=21.0
Q ss_pred CCceeeeEEcCCCceEEEEecCCCCCeEE
Q 047334 207 EKHYRGVRRRPWGKYAAEIRDPTRRGVRV 235 (364)
Q Consensus 207 tSgYRGV~~r~~GKW~A~I~~~~k~Gkrv 235 (364)
.--+.|+++++.|+|+++..+. .|++.
T Consensus 9 r~L~~GesqR~dG~Y~yry~d~--~Gkr~ 35 (69)
T 1b69_A 9 RILKTGESQRKDGRYLYKYIDS--FGEPQ 35 (69)
T ss_dssp SCCCTTEEECSSSCEEEEEECT--TSSEE
T ss_pred CccCCCeEEccCCcEEEEEEcC--CCCEE
Confidence 4457789999999999999985 35554
No 9
>3ju0_A Phage integrase; four stranded beta-sheet, DNA binding protein; 1.60A {Pectobacterium atrosepticum}
Probab=25.08 E-value=1e+02 Score=24.97 Aligned_cols=44 Identities=20% Similarity=0.209 Sum_probs=29.3
Q ss_pred eEEcCCC--ceEEEEecCCCCCeEEeecCCCC--HHHHHHHHHHHHHHh
Q 047334 213 VRRRPWG--KYAAEIRDPTRRGVRVWLGTFDT--AIEAARAYDRAAFQL 257 (364)
Q Consensus 213 V~~r~~G--KW~A~I~~~~k~Gkrv~LGtFdT--~EEAArAYD~AA~k~ 257 (364)
++..+.| .|.-+.+..++ -+++-||.|.. ..+|....+.+...+
T Consensus 28 L~V~psG~K~w~~rYr~~GK-~~~~~LG~yp~~SLa~AR~~a~~~r~~l 75 (108)
T 3ju0_A 28 LLVHPNGSKYWRLSYRFEKK-QRLLALGVYPAVSLADARQRRDEAKKLL 75 (108)
T ss_dssp EEECTTSCEEEEEEEEETTE-EEEEEEEEETTSCHHHHHHHHHHHHHHH
T ss_pred EEEEcCCCEEEEEEEEEcCc-eEEEecCCCCCCCHHHHHHHHHHHHHHH
Confidence 4455544 48888887433 36688999974 777777766665554
No 10
>1x60_A Sporulation-specific N-acetylmuramoyl-L-alanine amidase; CWLC, CWLCR, peptidoglycan, cell WALL lytic amidase, tandem repeats, hydrolase; NMR {Bacillus subtilis}
Probab=23.87 E-value=52 Score=24.16 Aligned_cols=23 Identities=26% Similarity=0.289 Sum_probs=19.2
Q ss_pred eEEeecCCCCHHHHHHHHHHHHH
Q 047334 233 VRVWLGTFDTAIEAARAYDRAAF 255 (364)
Q Consensus 233 krv~LGtFdT~EEAArAYD~AA~ 255 (364)
.||++|-|.+.++|.++-++...
T Consensus 46 yRV~vGpf~~~~~A~~~~~~L~~ 68 (79)
T 1x60_A 46 YKVQIGAFSSKDNADTLAARAKN 68 (79)
T ss_dssp EEEEEEEESSHHHHHHHHHHHHH
T ss_pred EEEEECCcCCHHHHHHHHHHHHH
Confidence 57999999999999988766554
Done!