BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 047335
         (139 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3KGB|A Chain A, Crystal Structure Of Thymidylate Synthase 12 FROM
           ENCEPHALITOZOON Cuniculi At 2.2 A Resolution
          Length = 294

 Score = 30.8 bits (68), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 14/45 (31%), Positives = 23/45 (51%)

Query: 68  EIIIFFLNGQADIGTDCCRAIDIITRNCWPAMLTSLGFTAEEGNI 112
           E ++FFL G+ D      + + I  +N     L S+G   EEG++
Sbjct: 66  EELLFFLRGETDSKVLEKKGVRIWEKNGAKQFLQSVGIDREEGDL 110


>pdb|1R18|A Chain A, Drosophila Protein Isoaspartyl Methyltransferase With
           S-Adenosyl-L- Homocysteine
          Length = 227

 Score = 28.9 bits (63), Expect = 0.89,   Method: Compositional matrix adjust.
 Identities = 21/87 (24%), Positives = 39/87 (44%), Gaps = 4/87 (4%)

Query: 30  DHLNNNMKPGYNLATRLEASGGLTECWNALMELKSCSNEIIIFFLNGQADIGTDCCRAID 89
           ++L +++KPG  +      SG LT C+   ++ K    +  I  +  QA++       ++
Sbjct: 76  EYLRDHLKPGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLN 135

Query: 90  IITRNCWPAMLTSLGFTAEEGNILRGY 116
              R    +ML S      EG+  +GY
Sbjct: 136 TDDR----SMLDSGQLLIVEGDGRKGY 158


>pdb|4F2G|A Chain A, The Crystal Structure Of Ornithine Carbamoyltransferase
           From Burkholderia Thailandensis E264
          Length = 309

 Score = 28.9 bits (63), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 13/40 (32%), Positives = 20/40 (50%), Gaps = 4/40 (10%)

Query: 79  DIGTDCCRAIDIITRNCWPAMLTSLGFTAEEGNILRGYCD 118
           D   + C+  D++T + W    TS+GF AE     R + D
Sbjct: 208 DDPNEACKGADLVTTDVW----TSMGFEAENEARKRAFAD 243


>pdb|3TTS|A Chain A, Crystal Structure Of Beta-Galactosidase From Bacillus
           Circulans Sp. Alkalophilus
 pdb|3TTS|B Chain B, Crystal Structure Of Beta-Galactosidase From Bacillus
           Circulans Sp. Alkalophilus
 pdb|3TTS|C Chain C, Crystal Structure Of Beta-Galactosidase From Bacillus
           Circulans Sp. Alkalophilus
 pdb|3TTS|D Chain D, Crystal Structure Of Beta-Galactosidase From Bacillus
           Circulans Sp. Alkalophilus
 pdb|3TTS|E Chain E, Crystal Structure Of Beta-Galactosidase From Bacillus
           Circulans Sp. Alkalophilus
 pdb|3TTS|F Chain F, Crystal Structure Of Beta-Galactosidase From Bacillus
           Circulans Sp. Alkalophilus
 pdb|3TTY|A Chain A, Crystal Structure Of Beta-Galactosidase From Bacillus
           Circulans Sp. Alkalophilus In Complex With Galactose
 pdb|3TTY|B Chain B, Crystal Structure Of Beta-Galactosidase From Bacillus
           Circulans Sp. Alkalophilus In Complex With Galactose
 pdb|3TTY|C Chain C, Crystal Structure Of Beta-Galactosidase From Bacillus
           Circulans Sp. Alkalophilus In Complex With Galactose
 pdb|3TTY|D Chain D, Crystal Structure Of Beta-Galactosidase From Bacillus
           Circulans Sp. Alkalophilus In Complex With Galactose
 pdb|3TTY|E Chain E, Crystal Structure Of Beta-Galactosidase From Bacillus
           Circulans Sp. Alkalophilus In Complex With Galactose
 pdb|3TTY|F Chain F, Crystal Structure Of Beta-Galactosidase From Bacillus
           Circulans Sp. Alkalophilus In Complex With Galactose
          Length = 675

 Score = 28.5 bits (62), Expect = 1.3,   Method: Composition-based stats.
 Identities = 10/30 (33%), Positives = 20/30 (66%)

Query: 86  RAIDIITRNCWPAMLTSLGFTAEEGNILRG 115
           + +D+++ + +P+M T   FTA   N++RG
Sbjct: 267 KEMDVVSWDNYPSMDTPFSFTAMAHNLMRG 296


>pdb|2CH9|A Chain A, Crystal Structure Of Dimeric Human Cystatin F
          Length = 131

 Score = 25.8 bits (55), Expect = 8.6,   Method: Compositional matrix adjust.
 Identities = 10/41 (24%), Positives = 22/41 (53%)

Query: 32 LNNNMKPGYNLATRLEASGGLTECWNALMELKSCSNEIIIF 72
          LN+ +KPG+    +    G L     ++ +  +C+N++ +F
Sbjct: 11 LNSRVKPGFPKTIKTNDPGVLQAARYSVEKFNNCTNDMFLF 51


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.322    0.136    0.427 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,974,650
Number of Sequences: 62578
Number of extensions: 143175
Number of successful extensions: 247
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 243
Number of HSP's gapped (non-prelim): 6
length of query: 139
length of database: 14,973,337
effective HSP length: 89
effective length of query: 50
effective length of database: 9,403,895
effective search space: 470194750
effective search space used: 470194750
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 46 (22.3 bits)