Query 047335
Match_columns 139
No_of_seqs 89 out of 101
Neff 4.4
Searched_HMMs 46136
Date Fri Mar 29 10:08:11 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047335.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/047335hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00213 predicted protein; Pr 100.0 7.1E-40 1.5E-44 244.9 9.3 115 3-127 1-117 (118)
2 PF05617 Prolamin_like: Prolam 99.8 6.2E-20 1.3E-24 123.3 3.2 65 54-118 1-70 (70)
3 PF07172 GRP: Glycine rich pro 93.5 0.047 1E-06 39.7 1.8 9 3-11 1-9 (95)
4 PLN00214 putative protein; Pro 88.6 0.45 9.8E-06 36.1 2.9 46 53-102 37-86 (115)
5 PF10731 Anophelin: Thrombin i 46.5 18 0.00038 25.0 2.1 26 3-32 1-26 (65)
6 smart00499 AAI Plant lipid tra 38.3 15 0.00034 23.1 0.8 22 79-100 23-45 (79)
7 cd03727 SOCS_ASB8 SOCS (suppre 37.2 22 0.00047 22.6 1.3 32 81-116 7-39 (43)
8 cd04660 nsLTP_like nsLTP_like: 32.8 32 0.0007 22.9 1.7 20 80-99 24-43 (73)
9 cd00010 AAI_LTSS AAI_LTSS: Alp 31.9 38 0.00083 21.4 1.9 29 73-101 7-39 (63)
10 PF15284 PAGK: Phage-encoded v 29.3 54 0.0012 22.4 2.3 15 5-19 4-18 (61)
11 cd01960 nsLTP1 nsLTP1: Non-spe 28.5 44 0.00095 22.9 1.8 60 55-119 3-76 (89)
12 PF09585 Lin0512_fam: Conserve 25.7 30 0.00065 26.2 0.6 28 80-107 18-46 (113)
No 1
>PLN00213 predicted protein; Provisional
Probab=100.00 E-value=7.1e-40 Score=244.90 Aligned_cols=115 Identities=24% Similarity=0.461 Sum_probs=103.9
Q ss_pred cchhHHHHHHHHHHHHHhhhccccccCCCCCCCCCCCCchhhhcccCCCchhHhhhhhcCcchHHHHHHHHHhCccc-cC
Q 047335 3 MALKHVFFILALTCLIMANIADATSRNDHLNNNMKPGYNLATRLEASGGLTECWNALMELKSCSNEIIIFFLNGQAD-IG 81 (139)
Q Consensus 3 Ma~k~~~~~l~~~~i~~~~na~~~~~~~~p~~~~~~~~~l~~rl~~~~~~~~Cwssl~~v~gC~~EI~~~fl~G~~~-lg 81 (139)
|++|||+++|+++||++++|||+ +|++.+++++++ +++++|.+|+.||||||++++||+.||.+++++||++ ||
T Consensus 1 m~iknV~~ll~v~cIvvsVna~l---pqf~~~fp~~~p--~~~~pg~pd~~kCwSSl~~vpGCv~EI~~si~~gkf~~Ig 75 (118)
T PLN00213 1 MSIKNVFLLLAVLCIIVSVNAQL---PQFPAQLPFLFP--FQLIPGLPDITKCFSSVMDIPGCIAEISQSIFTGKFGNLG 75 (118)
T ss_pred CchHHHHHHHHHHHHHheeccCC---CCCCCCCCCCCC--ccCCCCCccHHHHHHHHcCCcchHHHHHHHHHhchhcccc
Confidence 89999999999999999999998 788888777777 5789999999999999999999999999999999997 99
Q ss_pred hhchHHHHhhhcCcccccccCCCCCcchhhhhhhccccC-CCCCCCC
Q 047335 82 TDCCRAIDIITRNCWPAMLTSLGFTAEEGNILRGYCDAS-SAPSPGG 127 (139)
Q Consensus 82 ~~CC~AI~~i~~~CWP~mfps~pF~~ee~~~LK~~Cs~~-~~~sPap 127 (139)
++|||||++.+ +|||+| |.+||+| ++||++|+++ .+++|+|
T Consensus 76 ~aCCKAf~~~d-nCwP~~-P~~P~fP---p~LK~~Cs~i~~~~~~~~ 117 (118)
T PLN00213 76 PACCKAFLDAD-NCIPKI-PFIPFFP---PMLKEQCSRVAGATPPIP 117 (118)
T ss_pred hHHHHHHHhhh-ccccCC-cCCCccc---hHHHHHHhcccCCCCCCC
Confidence 99999999965 999995 9999998 7999999994 4444443
No 2
>PF05617 Prolamin_like: Prolamin-like; InterPro: IPR008502 This entry consists of several proteins of unknown function found exclusively in Arabidopsis thaliana.
Probab=99.78 E-value=6.2e-20 Score=123.31 Aligned_cols=65 Identities=31% Similarity=0.717 Sum_probs=56.9
Q ss_pred hHhhhhhcCcchHHHHHHHHHhCccc-cChhchHHHHhhhcCcccccccCCCCCcchhh----hhhhccc
Q 047335 54 ECWNALMELKSCSNEIIIFFLNGQAD-IGTDCCRAIDIITRNCWPAMLTSLGFTAEEGN----ILRGYCD 118 (139)
Q Consensus 54 ~Cwssl~~v~gC~~EI~~~fl~G~~~-lg~~CC~AI~~i~~~CWP~mfps~pF~~ee~~----~LK~~Cs 118 (139)
|||++++++++|+.||+.+|++|+.. ||++||++|++++++||+.|+...+++|++.+ .||++|+
T Consensus 1 kc~~~~~~~~~C~~eI~~~~~~g~~~~i~~~CC~~i~~~g~~C~~~l~~~~~~~p~~~~~~r~~l~~~C~ 70 (70)
T PF05617_consen 1 KCLSSCAKSPGCGDEIFNSFFNGNKKNIGPECCKAINKMGKDCHPALFKMFPFTPFFKPLLRDLLWNHCS 70 (70)
T ss_pred ChHHHcCCccchHHHHHHHHHcCCCCCCChHHHHHHHHHhHhHHHHHHHHccCCCCccchhHHHHHhhcC
Confidence 69999999999999999999999954 99999999999999999995555555555557 9999996
No 3
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=93.51 E-value=0.047 Score=39.65 Aligned_cols=9 Identities=33% Similarity=0.515 Sum_probs=6.1
Q ss_pred cchhHHHHH
Q 047335 3 MALKHVFFI 11 (139)
Q Consensus 3 Ma~k~~~~~ 11 (139)
||+|.++||
T Consensus 1 MaSK~~llL 9 (95)
T PF07172_consen 1 MASKAFLLL 9 (95)
T ss_pred CchhHHHHH
Confidence 888885444
No 4
>PLN00214 putative protein; Provisional
Probab=88.63 E-value=0.45 Score=36.13 Aligned_cols=46 Identities=20% Similarity=0.501 Sum_probs=34.9
Q ss_pred hhHhhhhhcCcchHHHHHHHHH-hCccccChhchHHHHhhhcCc---ccccccC
Q 047335 53 TECWNALMELKSCSNEIIIFFL-NGQADIGTDCCRAIDIITRNC---WPAMLTS 102 (139)
Q Consensus 53 ~~Cwssl~~v~gC~~EI~~~fl-~G~~~lg~~CC~AI~~i~~~C---WP~mfps 102 (139)
..|-.-+. +-|..||+..++ ||. ...+||+-+.+.+++| |=+++..
T Consensus 37 ~~C~~Kmt--~KCa~EI~a~i~~N~t--~s~~CC~~LVk~GK~CH~~LiK~i~~ 86 (115)
T PLN00214 37 NTCLVKIT--PKCALDIIAVVFENGT--LIDPCCNDLVKEGKVCHDTLIKYIAD 86 (115)
T ss_pred HHHHhhcc--HhhHHHHHHHHHcCCC--CchHHHHHHHHHhhHHHHHHHHHHHc
Confidence 45654443 669999999988 666 5899999999999999 4445544
No 5
>PF10731 Anophelin: Thrombin inhibitor from mosquito; InterPro: IPR018932 Members of this family are all inhibitors of thrombin, the peptidase that is at the end of the blood coagulation cascade and which creates the clot by cleaving fibrinogen. The interaction between thrombin and fibrinogen involves two different areas of contact - via the thrombin active site and via a second substrate-binding site known as an exosite. The inhibitor acts by blocking the exosite, rather than by interacting with the active site. The inhibitors are from mosquitoes that feed on human blood and which, by inhibiting thrombin, prevent the blood from clotting and keep it flowing.
Probab=46.52 E-value=18 Score=24.99 Aligned_cols=26 Identities=23% Similarity=0.376 Sum_probs=12.7
Q ss_pred cchhHHHHHHHHHHHHHhhhccccccCCCC
Q 047335 3 MALKHVFFILALTCLIMANIADATSRNDHL 32 (139)
Q Consensus 3 Ma~k~~~~~l~~~~i~~~~na~~~~~~~~p 32 (139)
||.|.+++.+ +|++..+.+|+ .||+-
T Consensus 1 MA~Kl~vial--LC~aLva~vQ~--APQYa 26 (65)
T PF10731_consen 1 MASKLIVIAL--LCVALVAIVQS--APQYA 26 (65)
T ss_pred CcchhhHHHH--HHHHHHHHHhc--CcccC
Confidence 7888765433 33333323343 26654
No 6
>smart00499 AAI Plant lipid transfer protein / seed storage protein / trypsin-alpha amylase inhibitor domain family.
Probab=38.25 E-value=15 Score=23.07 Aligned_cols=22 Identities=18% Similarity=0.484 Sum_probs=17.3
Q ss_pred ccChhchHHHHhh-hcCcccccc
Q 047335 79 DIGTDCCRAIDII-TRNCWPAML 100 (139)
Q Consensus 79 ~lg~~CC~AI~~i-~~~CWP~mf 100 (139)
.-...||..++.+ ...|+=..+
T Consensus 23 ~p~~~CC~~l~~~~~~~C~C~~~ 45 (79)
T smart00499 23 PPSQQCCSQLRGLNSAQCRCLAL 45 (79)
T ss_pred CCchHHHHHHHHhcccCCcchhh
Confidence 3778999999999 888865433
No 7
>cd03727 SOCS_ASB8 SOCS (suppressors of cytokine signaling) box of ASB8-like proteins. ASB family members have a C-terminal SOCS box and an N-terminal ankyrin-related sequence. Human ASB8 is highly transcribed in skeletal muscle and in lung carcinoma cell lines. The general function of the SOCS box is the recruitment of the ubiquitin-transferase system. The SOCS box interacts with Elongins B and C, Cullin-5 or Cullin-2, Rbx-1, and E2. Therefore, SOCS-box-containing proteins probably function as E3 ubiquitin ligases and mediate the degradation of proteins associated through their N-terminal regions.
Probab=37.18 E-value=22 Score=22.63 Aligned_cols=32 Identities=13% Similarity=0.175 Sum_probs=22.7
Q ss_pred ChhchHHHHh-hhcCcccccccCCCCCcchhhhhhhc
Q 047335 81 GTDCCRAIDI-ITRNCWPAMLTSLGFTAEEGNILRGY 116 (139)
Q Consensus 81 g~~CC~AI~~-i~~~CWP~mfps~pF~~ee~~~LK~~ 116 (139)
-.-|..||+. ++.+|.+...+..|.+. .||+|
T Consensus 7 q~LcR~aiR~~lg~~~l~~aI~~LpLP~----sLK~Y 39 (43)
T cd03727 7 KALARYAVRRSLGVQYLPEAVKQLPLPR----SVKEY 39 (43)
T ss_pred HHHHHHHHHHHHhhhhHHhhcccCCCCH----HHHHH
Confidence 3458888884 45676666568888864 88887
No 8
>cd04660 nsLTP_like nsLTP_like: Non-specific lipid-transfer protein (nsLTP)-like subfamily; composed of predominantly uncharacterized proteins with similarity to nsLTPs, including Medicago truncatula MtN5, the root-specific Phaseolus vulgaris PVR3, Antirrhinum majus FIL1, and Lilium longiflorum LIM3. Plant nsLTPs are small, soluble proteins that facilitate the transfer of fatty acids, phospholipids, glycolipids, and steroids between membranes. The MtN5 gene is induced during root nodule development. FIL1 is thought to be important in petal and stamen formation. The LIM3 gene is induced during the early prophase stage of meiosis in lily microsporocytes.
Probab=32.85 E-value=32 Score=22.94 Aligned_cols=20 Identities=20% Similarity=0.471 Sum_probs=15.6
Q ss_pred cChhchHHHHhhhcCccccc
Q 047335 80 IGTDCCRAIDIITRNCWPAM 99 (139)
Q Consensus 80 lg~~CC~AI~~i~~~CWP~m 99 (139)
-+.+||.+|+.++..|.=..
T Consensus 24 Ps~~CC~~vk~~~~~C~C~~ 43 (73)
T cd04660 24 PSRECCAALRRADLPCLCRY 43 (73)
T ss_pred CCHHHHHHHHcCCcCCEeec
Confidence 67889999998877776433
No 9
>cd00010 AAI_LTSS AAI_LTSS: Alpha-Amylase Inhibitors (AAI), Lipid Transfer (LT) and Seed Storage (SS) Protein family; a protein family unique to higher plants that includes cereal-type alpha-amylase inhibitors, lipid transfer proteins, seed storage proteins, and similar proteins. Proteins in this family are known to play important roles, in defending plants from insects and pathogens, lipid transport between intracellular membranes, and nutrient storage. Many proteins of this family have been identified as allergens in humans. These proteins contain a common pattern of eight cysteines that form four disulfide bridges.
Probab=31.87 E-value=38 Score=21.36 Aligned_cols=29 Identities=31% Similarity=0.746 Sum_probs=19.2
Q ss_pred HHhCccc-cChhchHHHHhhhc---Cccccccc
Q 047335 73 FLNGQAD-IGTDCCRAIDIITR---NCWPAMLT 101 (139)
Q Consensus 73 fl~G~~~-lg~~CC~AI~~i~~---~CWP~mfp 101 (139)
|++|... -.+.||.+++.+.+ .|.=..+.
T Consensus 7 y~~~~~~~Ps~~CC~~l~~~~~~~~~ClC~~~~ 39 (63)
T cd00010 7 YLTGGATAPPSDCCSGLKSVVKSDPKCLCAALN 39 (63)
T ss_pred HHcCCCCCCChHHHHHHHHHHhcChhhHHHHHc
Confidence 3455534 88999999999863 55444433
No 10
>PF15284 PAGK: Phage-encoded virulence factor
Probab=29.29 E-value=54 Score=22.43 Aligned_cols=15 Identities=20% Similarity=0.372 Sum_probs=10.6
Q ss_pred hhHHHHHHHHHHHHH
Q 047335 5 LKHVFFILALTCLIM 19 (139)
Q Consensus 5 ~k~~~~~l~~~~i~~ 19 (139)
+|++|+.|++++...
T Consensus 4 ~ksifL~l~~~LsA~ 18 (61)
T PF15284_consen 4 FKSIFLALVFILSAA 18 (61)
T ss_pred HHHHHHHHHHHHHHh
Confidence 678887776666555
No 11
>cd01960 nsLTP1 nsLTP1: Non-specific lipid-transfer protein type 1 (nsLTP1) subfamily; Plant nsLTPs are small, soluble proteins that facilitate the transfer of fatty acids, phospholipids, glycolipids, and steroids between membranes. In addition to lipid transport and assembly, nsLTPs also play a key role in the defense of plants against pathogens. There are two closely-related types of nsLTPs, types 1 and 2, which differ in protein sequence, molecular weight, and biological properties. nsLTPs contain an internal hydrophobic cavity, which serves as the binding site for lipids. The hydrophobic cavity accommodates various fatty acid ligands containing from ten to 18 carbon atoms. In general, the cavity is larger in nsLTP1 than in nsLTP2. nsLTP1 proteins are located in extracellular layers and in vacuolar structures. They may be involved in the formation of cutin layers on plant surfaces by transporting cutin monomers. Many nsLTP1 proteins have been characterized as allergens in humans.
Probab=28.51 E-value=44 Score=22.86 Aligned_cols=60 Identities=20% Similarity=0.509 Sum_probs=34.4
Q ss_pred HhhhhhcCcchHHHHHHHHHhCccc-cChhchHHHHhhhc------------CcccccccCCC-CCcchhhhhhhcccc
Q 047335 55 CWNALMELKSCSNEIIIFFLNGQAD-IGTDCCRAIDIITR------------NCWPAMLTSLG-FTAEEGNILRGYCDA 119 (139)
Q Consensus 55 Cwssl~~v~gC~~EI~~~fl~G~~~-lg~~CC~AI~~i~~------------~CWP~mfps~p-F~~ee~~~LK~~Cs~ 119 (139)
|=..+..+..|.. |++|... -++.||.+++.+.. .|.-......+ +.+.-..-|=+.|.-
T Consensus 3 C~~v~~~l~~C~~-----y~~g~~~~Ps~~CC~~v~~l~~~~~t~~~~~~~C~C~~~~~~~~~~i~~~~a~~LP~~C~v 76 (89)
T cd01960 3 CGQVTSLLAPCLG-----YLTGGGPAPSPACCSGVKSLNGLAKTTADRQAACNCLKSAAAGISGLNPGRAAGLPGKCGV 76 (89)
T ss_pred HHHHHhhHHhHHH-----HHhCCCCCCChHHhhhhHHHhhccCCCCchhhhhhcccccccccCCCCHHHHHhChHhccc
Confidence 4455555566643 3445444 88999999998653 24333333322 444444566677755
No 12
>PF09585 Lin0512_fam: Conserved hypothetical protein (Lin0512_fam); InterPro: IPR011719 This family consists of few members, broadly distributed. It occurs so far in several Firmicutes (twice in Oceanobacillus), one Cyanobacterium, one alpha Proteobacterium, and (with a long prefix) in plants. The function is unknown. The alignment includes a perfectly conserved motif GxGxDxHG near the N terminus.
Probab=25.74 E-value=30 Score=26.15 Aligned_cols=28 Identities=25% Similarity=0.469 Sum_probs=23.4
Q ss_pred cChhchHHHH-hhhcCcccccccCCCCCc
Q 047335 80 IGTDCCRAID-IITRNCWPAMLTSLGFTA 107 (139)
Q Consensus 80 lg~~CC~AI~-~i~~~CWP~mfps~pF~~ 107 (139)
.-+++++|++ .|.++|.|.|+...|+..
T Consensus 18 ~TkAA~RAv~DAI~~nslp~l~~~~~~~~ 46 (113)
T PF09585_consen 18 YTKAAVRAVRDAISHNSLPGLFEILGLDL 46 (113)
T ss_pred HHHHHHHHHHHHHhhcchHHHHHHcCCCh
Confidence 5678899997 788999999999888843
Done!