Query 047335
Match_columns 139
No_of_seqs 89 out of 101
Neff 4.4
Searched_HMMs 29240
Date Mon Mar 25 17:46:06 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047335.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/047335hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ebo_A Ebola virus envelope gl 13.9 35 0.0012 22.8 -0.2 8 80-87 48-55 (74)
2 3c8l_A FTSZ-like protein of un 12.9 52 0.0018 24.1 0.5 27 80-106 22-49 (122)
3 1ebo_A Ebola virus envelope pr 11.0 49 0.0017 24.3 -0.2 7 80-86 85-91 (131)
4 1afh_A Maize nonspecific lipid 11.0 1.4E+02 0.0046 19.9 2.1 60 55-119 4-77 (93)
5 2knp_A Mcocc-1; disulfide-rich 10.3 47 0.0016 19.0 -0.4 11 93-103 17-27 (33)
6 1n89_A Lipid transfer protein; 10.1 1.5E+02 0.0053 18.5 2.0 19 79-98 19-37 (67)
7 2ljo_A Non-specific lipid-tran 10.0 1.5E+02 0.0052 19.9 2.1 47 73-119 17-76 (93)
8 1l6h_A LTP2, non-specific lipi 9.1 1.4E+02 0.0046 18.9 1.4 17 79-96 20-36 (69)
9 1bwo_A NS-LTP1, nonspecific li 8.5 1.9E+02 0.0065 19.1 2.0 60 55-119 3-75 (90)
10 2alg_A Non-specific lipid tran 8.1 1.6E+02 0.0054 19.5 1.5 60 55-119 4-76 (92)
No 1
>2ebo_A Ebola virus envelope glycoprotein; filovirus, GP2, coat protein; 1.90A {Zaire ebolavirus - mayinga} SCOP: h.3.2.1
Probab=13.90 E-value=35 Score=22.82 Aligned_cols=8 Identities=38% Similarity=0.991 Sum_probs=6.7
Q ss_pred cChhchHH
Q 047335 80 IGTDCCRA 87 (139)
Q Consensus 80 lg~~CC~A 87 (139)
+||+||--
T Consensus 48 lgpdc~i~ 55 (74)
T 2ebo_A 48 LGPDCAIE 55 (74)
T ss_dssp HGGGGGCC
T ss_pred cCCccccC
Confidence 99999953
No 2
>3c8l_A FTSZ-like protein of unknown function; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 1.22A {Nostoc punctiforme}
Probab=12.91 E-value=52 Score=24.11 Aligned_cols=27 Identities=22% Similarity=0.380 Sum_probs=21.8
Q ss_pred cChhchHHHH-hhhcCcccccccCCCCC
Q 047335 80 IGTDCCRAID-IITRNCWPAMLTSLGFT 106 (139)
Q Consensus 80 lg~~CC~AI~-~i~~~CWP~mfps~pF~ 106 (139)
.-+++.+|++ .|.++|.|.++...|+.
T Consensus 22 ~TkAA~RAvrDAI~~nslp~~~~~~g~~ 49 (122)
T 3c8l_A 22 PTIAASRAVRNAIAHNALPGVWEVAGLS 49 (122)
T ss_dssp HHHHHHHHHHHHHTTCCCSSHHHHHTCS
T ss_pred HHHHHHHHHHHHHhhhcchhHHHHCCCC
Confidence 4467888887 78899999999888873
No 3
>1ebo_A Ebola virus envelope protein chimera consisting of A fragment of GCN4 zipper cloned...; membrane fusion subunit, viral protein; 3.00A {Ebola virus SP} SCOP: h.3.2.1
Probab=11.05 E-value=49 Score=24.25 Aligned_cols=7 Identities=43% Similarity=1.004 Sum_probs=6.3
Q ss_pred cChhchH
Q 047335 80 IGTDCCR 86 (139)
Q Consensus 80 lg~~CC~ 86 (139)
+||+||-
T Consensus 85 LGPdCcI 91 (131)
T 1ebo_A 85 LGPDCRI 91 (131)
T ss_dssp HGGGGGC
T ss_pred cCCcccc
Confidence 9999994
No 4
>1afh_A Maize nonspecific lipid transfer protein; lipid-binding protein, molecular modeling,; NMR {Zea mays} SCOP: a.52.1.1 PDB: 1fk0_A* 1fk1_A* 1fk2_A* 1fk3_A* 1fk4_A* 1fk5_A* 1fk6_A* 1fk7_A* 1mzl_A 1mzm_A* 1bv2_A 1rzl_A* 1uva_A* 1uvb_A* 1uvc_A*
Probab=11.00 E-value=1.4e+02 Score=19.94 Aligned_cols=60 Identities=18% Similarity=0.489 Sum_probs=35.1
Q ss_pred HhhhhhcCcchHHHHHHHHHhCccc-cChhchHHHHhhh----------c--CcccccccCC-CCCcchhhhhhhcccc
Q 047335 55 CWNALMELKSCSNEIIIFFLNGQAD-IGTDCCRAIDIIT----------R--NCWPAMLTSL-GFTAEEGNILRGYCDA 119 (139)
Q Consensus 55 Cwssl~~v~gC~~EI~~~fl~G~~~-lg~~CC~AI~~i~----------~--~CWP~mfps~-pF~~ee~~~LK~~Cs~ 119 (139)
|=+.+..+..|..- +.|... -.++||.+++.+. . .|.-...... ++.+.-+.-|-+.|.-
T Consensus 4 C~~v~~~L~pCl~y-----~~~~~~~Ps~~CC~gv~~l~~~a~t~~dr~~~ClC~~~~~~~~~~in~~~A~~LP~~C~v 77 (93)
T 1afh_A 4 CGQVASAIAPCISY-----ARGQGSGPSAGCCSGVRSLNNAARTTADRRAACNCLKNAAAGVSGLNAGNAASIPSKCGV 77 (93)
T ss_dssp SHHHHHHHGGGHHH-----HTTSCCSCCHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHC
T ss_pred hHHHHHhccCcHHH-----HcCCCCCChHHHHHHHHHHHHhhcCCCCCcccCEeeccccccccCcCHHHHHHHHHHcCC
Confidence 44444555556443 344434 6778999999985 2 4443222333 4556556677788865
No 5
>2knp_A Mcocc-1; disulfide-rich peptides, cystine knot motif, cytotoxic, melanoma cell LINE, non-hemolytic, seeds extract, unknown function; NMR {Momordica cochinchinensis}
Probab=10.26 E-value=47 Score=18.98 Aligned_cols=11 Identities=27% Similarity=1.047 Sum_probs=8.2
Q ss_pred cCcccccccCC
Q 047335 93 RNCWPAMLTSL 103 (139)
Q Consensus 93 ~~CWP~mfps~ 103 (139)
-+|||.+-|..
T Consensus 17 crcwptvtpgv 27 (33)
T 2knp_A 17 CRCWPTVTPGV 27 (33)
T ss_dssp CCEEECSSTTE
T ss_pred eeeccccCCCe
Confidence 47999887764
No 6
>1n89_A Lipid transfer protein; lipid transport; HET: PGM; NMR {Triticum turgidum subsp} SCOP: a.52.1.1 PDB: 1tuk_A*
Probab=10.09 E-value=1.5e+02 Score=18.51 Aligned_cols=19 Identities=16% Similarity=0.616 Sum_probs=14.6
Q ss_pred ccChhchHHHHhhhcCcccc
Q 047335 79 DIGTDCCRAIDIITRNCWPA 98 (139)
Q Consensus 79 ~lg~~CC~AI~~i~~~CWP~ 98 (139)
...++||.+++.. ..|.=.
T Consensus 19 ~Ps~~CC~~lk~~-~~ClC~ 37 (67)
T 1n89_A 19 KPSGECCGNLRAQ-QGCFCQ 37 (67)
T ss_dssp CCCHHHHHHHHHH-SSHHHH
T ss_pred CCCHHHHHhhCCC-CCCCCc
Confidence 4889999999975 677443
No 7
>2ljo_A Non-specific lipid-transfer protein 2; lipid transport; NMR {Lens culinaris}
Probab=10.00 E-value=1.5e+02 Score=19.94 Aligned_cols=47 Identities=15% Similarity=0.422 Sum_probs=26.7
Q ss_pred HHhCccccChhchHHHHhhhc--------Cc----ccccc-cCCCCCcchhhhhhhcccc
Q 047335 73 FLNGQADIGTDCCRAIDIITR--------NC----WPAML-TSLGFTAEEGNILRGYCDA 119 (139)
Q Consensus 73 fl~G~~~lg~~CC~AI~~i~~--------~C----WP~mf-ps~pF~~ee~~~LK~~Cs~ 119 (139)
|+.|.....+.||..++.+.. +| .-..- ...++...-+.-|=+.|.-
T Consensus 17 Yv~g~~~p~~~CC~gv~~l~~~a~t~~dr~~~C~clk~~a~~~~~in~~~a~~LP~~CgV 76 (93)
T 2ljo_A 17 YLTGGPGPSPQCCGGVKKLLAAANTTPDRQAACNCLKSAAGSITKLNTNNAAALPGKCGV 76 (93)
T ss_dssp HHTTSSCCCHHHHHHHHHHHHSCCSHHHHHHHHHHHHHHGGGCTTCCHHHHHHHHHHHTC
T ss_pred HHcCCCCCCCchhhHHHHHHHHhcCcccHHHHHHhHHhhhhccCCcCHHHHHhhhHhcCC
Confidence 455554588999999988742 22 22111 1234444445567777854
No 8
>1l6h_A LTP2, non-specific lipid transfer protein; NSLTP2, plant LTP, lipid transport; NMR {Oryza sativa} SCOP: a.52.1.1
Probab=9.08 E-value=1.4e+02 Score=18.90 Aligned_cols=17 Identities=18% Similarity=0.726 Sum_probs=13.7
Q ss_pred ccChhchHHHHhhhcCcc
Q 047335 79 DIGTDCCRAIDIITRNCW 96 (139)
Q Consensus 79 ~lg~~CC~AI~~i~~~CW 96 (139)
...++||.+++.. ..|.
T Consensus 20 ~Ps~~CC~~lk~~-~~Cl 36 (69)
T 1l6h_A 20 RPTAACCSSLRAQ-QGCF 36 (69)
T ss_dssp STTHHHHHHHHHH-HHHH
T ss_pred CCCHHHHHhhCCC-CCCC
Confidence 4889999999975 5674
No 9
>1bwo_A NS-LTP1, nonspecific lipid-transfer protein; wheat, lipid binding, crystallography; HET: LPC; 2.10A {Triticum aestivum} SCOP: a.52.1.1 PDB: 1cz2_A* 1gh1_A 1be2_A* 1jtb_A* 1lip_A 1mid_A* 3cee_A* 3gsh_A*
Probab=8.48 E-value=1.9e+02 Score=19.11 Aligned_cols=60 Identities=13% Similarity=0.454 Sum_probs=35.5
Q ss_pred HhhhhhcCcchHHHHHHHHHhCccccChhchHHHHhhhc------------CcccccccCC-CCCcchhhhhhhcccc
Q 047335 55 CWNALMELKSCSNEIIIFFLNGQADIGTDCCRAIDIITR------------NCWPAMLTSL-GFTAEEGNILRGYCDA 119 (139)
Q Consensus 55 Cwssl~~v~gC~~EI~~~fl~G~~~lg~~CC~AI~~i~~------------~CWP~mfps~-pF~~ee~~~LK~~Cs~ 119 (139)
|=+.+.++..|..-+ .|.....++||.+++.+.. .|.-....+. ++.+.-+.-|-+.|.-
T Consensus 3 C~~v~~~L~pCl~y~-----~~~~~Ps~~CC~~lk~l~~~a~t~~dr~~~ClClk~~~~~~~~in~~~A~~LP~~C~v 75 (90)
T 1bwo_A 3 CGHVDSLVRPCLSYV-----QGGPGPSGQCCDGVKNLHNQARSQSDRQSACNCLKGIARGIHNLNEDNARSIPPKCGV 75 (90)
T ss_dssp HHHHHHHHGGGHHHH-----TTCSCCCHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHTTCTTCCHHHHHTHHHHHTC
T ss_pred HHHHHHhhcccHHHH-----cCCCCCCHHHhHHHHHHHhhccCCCCCCccCcCccCchhccCCcCHHHHHHHHHHcCC
Confidence 444555556665543 3332378889999998752 4553333333 4566555667777855
No 10
>2alg_A Non-specific lipid transfer protein; LTP, NS-LTP, FOOD allergen, lipid transport; HET: DAO P6G; 2.30A {Prunus persica} PDB: 2b5s_A*
Probab=8.10 E-value=1.6e+02 Score=19.53 Aligned_cols=60 Identities=23% Similarity=0.545 Sum_probs=36.9
Q ss_pred HhhhhhcCcchHHHHHHHHHhCccccChhchHHHHhhh-------c-----CcccccccCC-CCCcchhhhhhhcccc
Q 047335 55 CWNALMELKSCSNEIIIFFLNGQADIGTDCCRAIDIIT-------R-----NCWPAMLTSL-GFTAEEGNILRGYCDA 119 (139)
Q Consensus 55 Cwssl~~v~gC~~EI~~~fl~G~~~lg~~CC~AI~~i~-------~-----~CWP~mfps~-pF~~ee~~~LK~~Cs~ 119 (139)
|=+.+.++..|..-+. .|. ...++||.+++.+. | .|.-...++. ++.+.-+.-|-+.|.-
T Consensus 4 C~~v~~~L~pCl~y~~----~~~-~p~~~CC~~lk~l~~~a~t~~d~~~~ClC~~~~~~~~~~in~~~A~~LP~~Cgv 76 (92)
T 2alg_A 4 CGQVSSSLAPCIPYVR----GGG-AVPPACCNGIRNVNNLARTTPDRQAACNCLKQLSASVPGVNPNNAAALPGKCGV 76 (92)
T ss_dssp HHHHHHHHGGGHHHHH----HCS-CCCHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHTTC
T ss_pred hHHHHHhccCcHHHHc----CCC-CCCHHHHHHHHHHHhhhcccCCCCcCCccccCcccccCccChHHHHHHHHHcCC
Confidence 5555556666766542 232 47789999999975 3 4453333333 5666556677778865
Done!