Query 047335
Match_columns 139
No_of_seqs 89 out of 101
Neff 4.4
Searched_HMMs 13730
Date Mon Mar 25 17:46:15 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047335.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/047335hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1fk5a_ a.52.1.1 (A:) Plant no 31.9 18 0.0013 22.9 3.0 60 55-119 4-77 (93)
2 d1mida_ a.52.1.1 (A:) Plant no 21.7 36 0.0026 21.3 3.1 60 55-119 3-75 (91)
3 d1hssa_ a.52.1.2 (A:) 0.19 alp 9.6 58 0.0043 22.0 1.6 34 62-96 13-49 (120)
4 d2apob1 g.41.16.1 (B:403-457) 7.9 88 0.0064 18.4 1.7 25 113-137 15-39 (55)
5 d1k8rb_ d.15.1.5 (B:) Protein 7.6 73 0.0053 20.7 1.3 20 59-79 14-33 (95)
6 d1g60a_ c.66.1.11 (A:) Methylt 7.4 73 0.0053 21.4 1.3 25 83-107 11-35 (256)
7 d1gvda_ a.4.1.3 (A:) c-Myb, DN 6.4 65 0.0047 17.9 0.5 17 103-119 4-20 (52)
8 d2ey4e1 g.41.16.1 (E:4-55) Rib 6.4 88 0.0064 18.2 1.1 25 113-137 13-37 (52)
9 d1gv2a2 a.4.1.3 (A:144-190) c- 6.1 71 0.0052 17.5 0.5 17 103-119 2-18 (47)
10 d1dsqa_ g.40.1.1 (A:) Nucleic 4.8 98 0.0071 15.5 0.5 11 74-84 7-18 (26)
No 1
>d1fk5a_ a.52.1.1 (A:) Plant non-specific lipid-transfer protein (ns-LTP, ns-LTP1) {Maize (Zea mays) [TaxId: 4577]}
Probab=31.90 E-value=18 Score=22.88 Aligned_cols=60 Identities=18% Similarity=0.508 Sum_probs=35.2
Q ss_pred HhhhhhcCcchHHHHHHHHHhCccc-cChhchHHHHhhhc------------Cccccccc-CCCCCcchhhhhhhcccc
Q 047335 55 CWNALMELKSCSNEIIIFFLNGQAD-IGTDCCRAIDIITR------------NCWPAMLT-SLGFTAEEGNILRGYCDA 119 (139)
Q Consensus 55 Cwssl~~v~gC~~EI~~~fl~G~~~-lg~~CC~AI~~i~~------------~CWP~mfp-s~pF~~ee~~~LK~~Cs~ 119 (139)
|=+.+.++-.|.. |++|... -++.||.+++.+.+ +|.-.... ..++...-..-|-..|.-
T Consensus 4 C~~v~~~l~pCl~-----Yltg~~~~Ps~~CC~gv~~l~~~a~t~~dr~~lC~cl~~~~~~~~~in~~ra~~LP~~C~v 77 (93)
T d1fk5a_ 4 CGQVASAIAPCIS-----YARGQGSGPSAGCCSGVRSLNNAARTTADRRAACNCLKNAAAGVSGLNAGNAASIPSKCGV 77 (93)
T ss_dssp HHHHHHHHGGGHH-----HHTTCSSSCCHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHTCTTCCHHHHHHHHHHTTC
T ss_pred HHHHHHHhhhhHH-----HHhCCCCCCCCchhHHHHHHHHHccCCccHHHHHHhhhhcccccCCcCHHHHHhhhHhcCC
Confidence 4444444444532 5666655 78999999998763 23333322 235566555667778865
No 2
>d1mida_ a.52.1.1 (A:) Plant non-specific lipid-transfer protein (ns-LTP, ns-LTP1) {Barley (Hordeum vulgare) [TaxId: 4513]}
Probab=21.67 E-value=36 Score=21.29 Aligned_cols=60 Identities=15% Similarity=0.495 Sum_probs=34.6
Q ss_pred HhhhhhcCcchHHHHHHHHHhCccccChhchHHHHhhhc------------CcccccccC-CCCCcchhhhhhhcccc
Q 047335 55 CWNALMELKSCSNEIIIFFLNGQADIGTDCCRAIDIITR------------NCWPAMLTS-LGFTAEEGNILRGYCDA 119 (139)
Q Consensus 55 Cwssl~~v~gC~~EI~~~fl~G~~~lg~~CC~AI~~i~~------------~CWP~mfps-~pF~~ee~~~LK~~Cs~ 119 (139)
|=+.+..+-.|.. |++|.....+.||.+++.+.. +|.-..-.. .++...-..-|=+.|.-
T Consensus 3 C~~v~~~l~pCl~-----Yl~g~~~P~~~CC~gv~~L~~~a~t~~d~~~lC~cl~~~~~~~~~in~~ra~~LP~~C~v 75 (91)
T d1mida_ 3 CGQVDSKMKPCLT-----YVQGGPGPSGECCNGVRDLHNQAQSSGDRQTVCNCLKGIARGIHNLNLNNAASIPSKCNV 75 (91)
T ss_dssp HHHHHHHHGGGHH-----HHTTCSCCCHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHTCTTCCHHHHHHHHHHTTC
T ss_pred HHHHHHHHHhhHH-----HHcCCCCCCcchhhhHHHHHHHhcCCCcHHHHHHhhhhhcccCCCcCHHHHHhchHhcCC
Confidence 4444445555543 456665599999999988753 233332222 23444455667777855
No 3
>d1hssa_ a.52.1.2 (A:) 0.19 alpha-amylase inhibitor {Wheat (Triticum aestivum) [TaxId: 4565]}
Probab=9.60 E-value=58 Score=22.02 Aligned_cols=34 Identities=26% Similarity=0.598 Sum_probs=22.2
Q ss_pred CcchHHHHHHHHHhCcc-c--cChhchHHHHhhhcCcc
Q 047335 62 LKSCSNEIIIFFLNGQA-D--IGTDCCRAIDIITRNCW 96 (139)
Q Consensus 62 v~gC~~EI~~~fl~G~~-~--lg~~CC~AI~~i~~~CW 96 (139)
+++|-..+.+- ..|.. . +...||+-+..|.+.|+
T Consensus 13 L~~CR~yv~~q-~~G~~~~~~~k~~CC~eLa~i~~~CR 49 (120)
T d1hssa_ 13 LPACRPLLRLQ-CNGSQVPEAVLRDCCQQLAHISEWCR 49 (120)
T ss_dssp CTTHHHHHHHH-TTTCCCCHHHHHHHHHHHHTSCTTTH
T ss_pred cHHHHHHHHHH-hcCCCCcchHHHHHHHHHHhcCcccc
Confidence 34576665443 23322 2 66889999999998885
No 4
>d2apob1 g.41.16.1 (B:403-457) Ribosome biogenesis protein Nop10 {Archaeon Methanococcus jannaschii [TaxId: 2190]}
Probab=7.88 E-value=88 Score=18.38 Aligned_cols=25 Identities=8% Similarity=0.123 Sum_probs=16.9
Q ss_pred hhhccccCCCCCCCCCCccccCCCC
Q 047335 113 LRGYCDASSAPSPGGPTVIYQPQTD 137 (139)
Q Consensus 113 LK~~Cs~~~~~sPap~~~~~~~~~~ 137 (139)
||+.|-.=|..+-.+.|.-|-|.|.
T Consensus 15 L~~~CP~CG~~t~~a~P~rfSPeDk 39 (55)
T d2apob1 15 LKEICPKCGEKTVIPKPPKFSLEDR 39 (55)
T ss_dssp SSSBCSSSCSBCBCCCCCCCCTTCT
T ss_pred ccccCcCCCCccCccCCCCCCCCcc
Confidence 5778876455555666777888764
No 5
>d1k8rb_ d.15.1.5 (B:) Protein kinase byr2 {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}
Probab=7.65 E-value=73 Score=20.68 Aligned_cols=20 Identities=5% Similarity=0.046 Sum_probs=13.7
Q ss_pred hhcCcchHHHHHHHHHhCccc
Q 047335 59 LMELKSCSNEIIIFFLNGQAD 79 (139)
Q Consensus 59 l~~v~gC~~EI~~~fl~G~~~ 79 (139)
..++.||.+||+.-.+ .+++
T Consensus 14 ~vni~gC~~ai~~~~L-kK~~ 33 (95)
T d1k8rb_ 14 AVQSRGDYQKTLAIAL-KKFS 33 (95)
T ss_dssp EEECCSCHHHHHHHHH-HHHT
T ss_pred EEEeccCHHHHHHHHH-HhcC
Confidence 5789999999765433 3444
No 6
>d1g60a_ c.66.1.11 (A:) Methyltransferase mboII {Moraxella bovis [TaxId: 476]}
Probab=7.37 E-value=73 Score=21.37 Aligned_cols=25 Identities=8% Similarity=0.236 Sum_probs=22.4
Q ss_pred hchHHHHhhhcCcccccccCCCCCc
Q 047335 83 DCCRAIDIITRNCWPAMLTSLGFTA 107 (139)
Q Consensus 83 ~CC~AI~~i~~~CWP~mfps~pF~~ 107 (139)
+|.+.+..+.+++.-.++.++||..
T Consensus 11 Dcle~l~~lpd~sVdliitdPPY~~ 35 (256)
T d1g60a_ 11 NCFDFLDQVENKSVQLAVIDPPYNL 35 (256)
T ss_dssp CHHHHHHHSCTTCEEEEEECCCCSS
T ss_pred cHHHHHhhCcCCCcCEEEECCCCCC
Confidence 5999999999999999999999853
No 7
>d1gvda_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]}
Probab=6.35 E-value=65 Score=17.94 Aligned_cols=17 Identities=24% Similarity=0.126 Sum_probs=13.4
Q ss_pred CCCCcchhhhhhhcccc
Q 047335 103 LGFTAEEGNILRGYCDA 119 (139)
Q Consensus 103 ~pF~~ee~~~LK~~Cs~ 119 (139)
-|+++||...|+..-..
T Consensus 4 g~WT~eED~~L~~~v~~ 20 (52)
T d1gvda_ 4 GPWTKEEDQRLIKLVQK 20 (52)
T ss_dssp CSCCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHH
Confidence 47899999999886544
No 8
>d2ey4e1 g.41.16.1 (E:4-55) Ribosome biogenesis protein Nop10 {Archaeon Pyrococcus furiosus [TaxId: 2261]}
Probab=6.35 E-value=88 Score=18.21 Aligned_cols=25 Identities=12% Similarity=0.300 Sum_probs=16.7
Q ss_pred hhhccccCCCCCCCCCCccccCCCC
Q 047335 113 LRGYCDASSAPSPGGPTVIYQPQTD 137 (139)
Q Consensus 113 LK~~Cs~~~~~sPap~~~~~~~~~~ 137 (139)
||+.|-.-|..+-++.|.-|-|.|.
T Consensus 13 L~~~CP~CG~~t~~a~ParfSPeDk 37 (52)
T d2ey4e1 13 LKEVCPVCGEKTKVAHPPRFSPEDP 37 (52)
T ss_dssp SSSBCTTTCCBCEESSCCCCCTTCT
T ss_pred ccccCcCCCCcccccCCCCCCCCcc
Confidence 5777766455555666677888764
No 9
>d1gv2a2 a.4.1.3 (A:144-190) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]}
Probab=6.05 E-value=71 Score=17.46 Aligned_cols=17 Identities=24% Similarity=0.261 Sum_probs=12.7
Q ss_pred CCCCcchhhhhhhcccc
Q 047335 103 LGFTAEEGNILRGYCDA 119 (139)
Q Consensus 103 ~pF~~ee~~~LK~~Cs~ 119 (139)
.||+.||..+|...-..
T Consensus 2 ~~WT~eED~~L~~~v~~ 18 (47)
T d1gv2a2 2 TSWTEEEDRIIYQAHKR 18 (47)
T ss_dssp CCCCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHH
Confidence 37899999988776543
No 10
>d1dsqa_ g.40.1.1 (A:) Nucleic acid binding protein p14 {Mouse mammary tumor virus [TaxId: 11757]}
Probab=4.83 E-value=98 Score=15.50 Aligned_cols=11 Identities=36% Similarity=0.721 Sum_probs=6.9
Q ss_pred HhCccc-cChhc
Q 047335 74 LNGQAD-IGTDC 84 (139)
Q Consensus 74 l~G~~~-lg~~C 84 (139)
.-|+++ |.++|
T Consensus 7 scgktghikkdc 18 (26)
T d1dsqa_ 7 SCGKTGHIKRDC 18 (26)
T ss_dssp TTCCBSSCTTTT
T ss_pred ecCCcccchhhh
Confidence 446666 76666
Done!