Query 047336
Match_columns 290
No_of_seqs 225 out of 1844
Neff 8.5
Searched_HMMs 46136
Date Fri Mar 29 10:08:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047336.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/047336hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4658 Apoptotic ATPase [Sign 100.0 2E-29 4.4E-34 253.2 19.5 254 1-287 1-273 (889)
2 PF00931 NB-ARC: NB-ARC domain 99.7 4.2E-16 9E-21 139.4 11.1 107 164-286 1-112 (287)
3 PLN03210 Resistant to P. syrin 99.3 2.3E-11 5.1E-16 127.8 13.5 60 158-219 183-242 (1153)
4 cd01128 rho_factor Transcripti 98.5 1.2E-07 2.6E-12 83.2 6.0 56 182-238 16-73 (249)
5 PRK09376 rho transcription ter 98.5 9.1E-08 2E-12 88.2 4.4 54 182-236 169-224 (416)
6 PRK00411 cdc6 cell division co 98.5 1.8E-06 3.8E-11 80.9 12.3 83 157-239 28-112 (394)
7 TIGR02928 orc1/cdc6 family rep 98.3 5.7E-06 1.2E-10 76.5 11.7 81 158-238 14-100 (365)
8 PTZ00202 tuzin; Provisional 98.2 1.9E-05 4.2E-10 73.8 12.0 77 156-240 259-336 (550)
9 PRK08118 topology modulation p 98.2 7.6E-07 1.7E-11 73.5 2.2 51 183-234 2-57 (167)
10 PF13191 AAA_16: AAA ATPase do 98.2 2.9E-06 6.4E-11 70.3 5.3 46 160-205 1-47 (185)
11 TIGR00767 rho transcription te 98.1 3E-06 6.5E-11 78.5 5.4 57 182-239 168-226 (415)
12 PF13401 AAA_22: AAA domain; P 98.1 3.4E-06 7.5E-11 66.0 5.1 59 182-242 4-67 (131)
13 PRK11331 5-methylcytosine-spec 98.0 2.1E-05 4.5E-10 74.1 7.9 69 159-231 175-243 (459)
14 cd00009 AAA The AAA+ (ATPases 97.8 7.6E-05 1.7E-09 58.5 6.6 60 162-225 1-60 (151)
15 TIGR03015 pepcterm_ATPase puta 97.8 0.00035 7.5E-09 61.7 11.4 70 167-239 27-97 (269)
16 PF01637 Arch_ATPase: Archaeal 97.7 3.2E-05 6.9E-10 66.2 3.5 43 161-205 1-43 (234)
17 PF05496 RuvB_N: Holliday junc 97.6 5.6E-05 1.2E-09 64.8 4.2 52 159-212 24-78 (233)
18 PF12061 DUF3542: Protein of u 97.6 0.00017 3.7E-09 64.0 7.1 105 3-127 296-401 (402)
19 COG1474 CDC6 Cdc6-related prot 97.6 0.00045 9.7E-09 64.1 9.8 78 159-238 17-98 (366)
20 PRK07261 topology modulation p 97.6 0.00016 3.5E-09 59.9 5.9 52 184-235 2-54 (171)
21 KOG2543 Origin recognition com 97.5 0.0005 1.1E-08 62.9 9.2 76 158-238 5-81 (438)
22 PF13207 AAA_17: AAA domain; P 97.4 9.9E-05 2.1E-09 57.0 3.0 21 184-204 1-21 (121)
23 smart00763 AAA_PrkA PrkA AAA d 97.4 0.00018 4E-09 66.0 4.9 46 160-205 52-101 (361)
24 KOG2028 ATPase related to the 97.3 0.00035 7.6E-09 63.6 5.5 72 158-238 143-214 (554)
25 TIGR00635 ruvB Holliday juncti 97.3 0.00019 4E-09 64.8 3.8 47 159-205 4-53 (305)
26 PRK13342 recombination factor 97.3 0.00039 8.5E-09 65.7 5.7 44 159-204 12-58 (413)
27 PRK00080 ruvB Holliday junctio 97.3 0.00033 7.3E-09 64.0 5.0 47 159-205 25-74 (328)
28 PTZ00112 origin recognition co 97.3 0.0021 4.7E-08 65.0 10.5 83 158-240 754-844 (1164)
29 PRK06696 uridine kinase; Valid 97.2 0.00042 9E-09 59.9 4.9 41 164-204 3-44 (223)
30 PRK07667 uridine kinase; Provi 97.2 0.00057 1.2E-08 57.7 4.8 37 168-204 3-39 (193)
31 PTZ00301 uridine kinase; Provi 97.2 0.00043 9.4E-09 59.3 4.0 23 182-204 3-25 (210)
32 PF03029 ATP_bind_1: Conserved 97.1 0.00041 8.8E-09 60.6 3.4 20 187-206 1-20 (238)
33 PF05729 NACHT: NACHT domain 97.1 0.00067 1.5E-08 54.8 4.2 42 183-224 1-46 (166)
34 COG2256 MGS1 ATPase related to 97.0 0.0012 2.6E-08 60.9 5.8 68 158-237 29-96 (436)
35 PRK15455 PrkA family serine pr 97.0 0.00085 1.8E-08 65.1 4.8 45 160-204 77-125 (644)
36 COG0466 Lon ATP-dependent Lon 97.0 0.00082 1.8E-08 66.0 4.7 53 158-212 322-378 (782)
37 COG1618 Predicted nucleotide k 97.0 0.0006 1.3E-08 55.3 3.1 23 182-204 5-27 (179)
38 PRK05480 uridine/cytidine kina 96.9 0.00072 1.5E-08 57.6 3.4 26 180-205 4-29 (209)
39 PRK09361 radB DNA repair and r 96.9 0.005 1.1E-07 53.0 8.6 53 175-230 16-68 (225)
40 TIGR03420 DnaA_homol_Hda DnaA 96.9 0.0013 2.8E-08 56.5 4.7 54 164-221 22-75 (226)
41 TIGR02903 spore_lon_C ATP-depe 96.9 0.0012 2.6E-08 65.5 4.9 61 159-221 154-217 (615)
42 PRK08233 hypothetical protein; 96.9 0.00089 1.9E-08 55.4 3.3 24 182-205 3-26 (182)
43 PF00485 PRK: Phosphoribulokin 96.9 0.00077 1.7E-08 56.8 2.9 21 184-204 1-21 (194)
44 PF13238 AAA_18: AAA domain; P 96.8 0.0008 1.7E-08 52.0 2.7 21 185-205 1-21 (129)
45 PRK04195 replication factor C 96.8 0.003 6.5E-08 60.9 7.2 47 159-205 14-62 (482)
46 TIGR00235 udk uridine kinase. 96.8 0.00094 2E-08 56.9 3.2 25 180-204 4-28 (207)
47 COG2255 RuvB Holliday junction 96.8 0.0014 3.1E-08 57.9 4.3 47 159-205 26-75 (332)
48 PRK09270 nucleoside triphospha 96.8 0.0018 3.9E-08 56.1 5.0 26 179-204 30-55 (229)
49 TIGR02237 recomb_radB DNA repa 96.8 0.0033 7.2E-08 53.4 6.4 52 177-231 7-58 (209)
50 PRK12402 replication factor C 96.8 0.0015 3.1E-08 59.7 4.3 44 159-204 15-58 (337)
51 PRK13341 recombination factor 96.8 0.0025 5.3E-08 64.2 6.1 50 159-212 28-80 (725)
52 TIGR01242 26Sp45 26S proteasom 96.8 0.0014 3E-08 60.9 4.0 47 158-204 121-178 (364)
53 PRK05541 adenylylsulfate kinas 96.8 0.0015 3.3E-08 54.0 3.8 36 181-218 6-41 (176)
54 PF05621 TniB: Bacterial TniB 96.7 0.017 3.7E-07 51.8 10.6 82 159-241 34-124 (302)
55 PRK00440 rfc replication facto 96.7 0.0054 1.2E-07 55.4 7.3 45 159-205 17-61 (319)
56 smart00382 AAA ATPases associa 96.7 0.0022 4.7E-08 49.5 4.0 38 183-222 3-40 (148)
57 PRK05564 DNA polymerase III su 96.7 0.0085 1.9E-07 54.4 8.4 78 159-238 4-86 (313)
58 TIGR01360 aden_kin_iso1 adenyl 96.6 0.0016 3.5E-08 54.1 3.2 24 181-204 2-25 (188)
59 CHL00095 clpC Clp protease ATP 96.6 0.0019 4.1E-08 66.3 4.3 44 159-204 179-222 (821)
60 PRK06547 hypothetical protein; 96.6 0.0032 7E-08 52.2 4.7 26 180-205 13-38 (172)
61 cd01123 Rad51_DMC1_radA Rad51_ 96.6 0.0075 1.6E-07 52.1 7.2 55 177-231 14-72 (235)
62 TIGR02881 spore_V_K stage V sp 96.6 0.0027 5.9E-08 56.1 4.5 45 160-204 7-64 (261)
63 PRK06762 hypothetical protein; 96.6 0.0018 3.8E-08 53.0 3.1 24 182-205 2-25 (166)
64 PF13671 AAA_33: AAA domain; P 96.6 0.0018 3.9E-08 51.3 3.0 21 184-204 1-21 (143)
65 PF13173 AAA_14: AAA domain 96.6 0.0026 5.6E-08 49.9 3.7 40 182-224 2-41 (128)
66 KOG2227 Pre-initiation complex 96.5 0.017 3.6E-07 54.5 9.4 81 157-238 148-231 (529)
67 cd02019 NK Nucleoside/nucleoti 96.5 0.0018 3.8E-08 45.1 2.4 22 184-205 1-22 (69)
68 TIGR03345 VI_ClpV1 type VI sec 96.5 0.0027 5.8E-08 65.3 4.6 79 159-239 187-277 (852)
69 COG0572 Udk Uridine kinase [Nu 96.5 0.0023 4.9E-08 54.8 3.2 25 180-204 6-30 (218)
70 PRK03992 proteasome-activating 96.5 0.003 6.4E-08 59.3 4.2 47 159-205 131-188 (389)
71 cd02023 UMPK Uridine monophosp 96.5 0.0017 3.6E-08 54.9 2.3 21 184-204 1-21 (198)
72 PHA02544 44 clamp loader, smal 96.5 0.0036 7.8E-08 56.7 4.5 46 159-205 21-66 (316)
73 PRK04841 transcriptional regul 96.4 0.0082 1.8E-07 62.1 7.6 65 168-239 19-84 (903)
74 PLN03025 replication factor C 96.4 0.0033 7.3E-08 57.2 4.2 44 159-204 13-56 (319)
75 cd01393 recA_like RecA is a b 96.4 0.01 2.2E-07 51.0 7.0 52 177-230 14-71 (226)
76 PF00004 AAA: ATPase family as 96.4 0.0021 4.5E-08 49.9 2.4 51 185-240 1-56 (132)
77 PRK03839 putative kinase; Prov 96.4 0.0023 5E-08 53.1 2.8 22 184-205 2-23 (180)
78 PRK04040 adenylate kinase; Pro 96.4 0.0025 5.5E-08 53.6 3.0 23 182-204 2-24 (188)
79 PRK07952 DNA replication prote 96.4 0.022 4.8E-07 49.9 8.9 50 168-219 85-134 (244)
80 PRK14963 DNA polymerase III su 96.4 0.003 6.4E-08 61.2 3.7 46 159-205 14-59 (504)
81 TIGR03499 FlhF flagellar biosy 96.4 0.012 2.6E-07 52.7 7.3 24 181-204 193-216 (282)
82 TIGR02639 ClpA ATP-dependent C 96.3 0.004 8.7E-08 63.1 4.5 79 159-239 182-272 (731)
83 cd02025 PanK Pantothenate kina 96.3 0.0021 4.6E-08 55.4 2.2 21 184-204 1-21 (220)
84 PRK10865 protein disaggregatio 96.3 0.0042 9.1E-08 64.0 4.6 44 159-204 178-221 (857)
85 PRK14738 gmk guanylate kinase; 96.3 0.0035 7.6E-08 53.4 3.4 31 174-204 5-35 (206)
86 PF07728 AAA_5: AAA domain (dy 96.3 0.0048 1E-07 48.8 3.9 44 185-233 2-45 (139)
87 cd02028 UMPK_like Uridine mono 96.3 0.0035 7.6E-08 52.2 3.1 22 184-205 1-22 (179)
88 PRK00771 signal recognition pa 96.3 0.022 4.8E-07 54.1 8.8 24 181-204 94-117 (437)
89 cd02020 CMPK Cytidine monophos 96.3 0.0027 5.9E-08 50.4 2.4 21 184-204 1-21 (147)
90 COG0467 RAD55 RecA-superfamily 96.3 0.0057 1.2E-07 54.0 4.6 53 177-233 18-70 (260)
91 PRK08903 DnaA regulatory inact 96.3 0.0085 1.8E-07 51.6 5.6 43 162-205 22-65 (227)
92 PRK10751 molybdopterin-guanine 96.3 0.0042 9.1E-08 51.5 3.5 24 181-204 5-28 (173)
93 PF03205 MobB: Molybdopterin g 96.2 0.0035 7.6E-08 50.1 2.9 39 183-222 1-39 (140)
94 KOG2004 Mitochondrial ATP-depe 96.2 0.0051 1.1E-07 60.6 4.4 53 158-212 410-466 (906)
95 cd02024 NRK1 Nicotinamide ribo 96.2 0.0028 6E-08 53.3 2.3 22 184-205 1-22 (187)
96 TIGR03263 guanyl_kin guanylate 96.2 0.0035 7.6E-08 51.8 2.9 22 183-204 2-23 (180)
97 cd01672 TMPK Thymidine monopho 96.2 0.0098 2.1E-07 49.6 5.6 22 184-205 2-23 (200)
98 PRK07003 DNA polymerase III su 96.2 0.012 2.5E-07 59.1 6.8 45 159-204 16-60 (830)
99 PRK13975 thymidylate kinase; P 96.2 0.0089 1.9E-07 50.1 5.3 23 183-205 3-25 (196)
100 PRK06217 hypothetical protein; 96.2 0.014 3E-07 48.6 6.4 36 183-219 2-39 (183)
101 TIGR00554 panK_bact pantothena 96.2 0.0078 1.7E-07 54.1 5.1 24 180-203 60-83 (290)
102 TIGR02322 phosphon_PhnN phosph 96.2 0.0038 8.2E-08 51.7 2.9 23 183-205 2-24 (179)
103 PRK12377 putative replication 96.2 0.027 5.8E-07 49.5 8.3 38 182-221 101-138 (248)
104 cd01394 radB RadB. The archaea 96.2 0.018 4E-07 49.2 7.2 49 175-225 12-60 (218)
105 cd01120 RecA-like_NTPases RecA 96.2 0.005 1.1E-07 49.3 3.5 40 184-225 1-40 (165)
106 TIGR00150 HI0065_YjeE ATPase, 96.2 0.008 1.7E-07 47.6 4.4 41 166-206 6-46 (133)
107 PHA00729 NTP-binding motif con 96.2 0.0075 1.6E-07 52.1 4.6 23 182-204 17-39 (226)
108 PF08477 Miro: Miro-like prote 96.1 0.0047 1E-07 47.2 2.9 23 185-207 2-24 (119)
109 PRK00625 shikimate kinase; Pro 96.1 0.004 8.6E-08 51.7 2.7 21 184-204 2-22 (173)
110 PF00158 Sigma54_activat: Sigm 96.1 0.031 6.7E-07 46.1 8.0 43 161-204 1-44 (168)
111 TIGR01359 UMP_CMP_kin_fam UMP- 96.1 0.0035 7.7E-08 52.0 2.4 21 184-204 1-21 (183)
112 CHL00181 cbbX CbbX; Provisiona 96.1 0.009 2E-07 53.7 5.1 46 159-204 23-81 (287)
113 PRK00131 aroK shikimate kinase 96.1 0.0047 1E-07 50.5 3.0 24 182-205 4-27 (175)
114 COG1428 Deoxynucleoside kinase 96.1 0.0042 9E-08 52.7 2.6 25 182-206 4-28 (216)
115 TIGR00390 hslU ATP-dependent p 96.1 0.019 4.1E-07 54.0 7.1 77 159-237 12-104 (441)
116 PRK14962 DNA polymerase III su 96.1 0.0075 1.6E-07 57.9 4.6 45 159-204 14-58 (472)
117 PRK00889 adenylylsulfate kinas 96.1 0.0056 1.2E-07 50.6 3.3 25 181-205 3-27 (175)
118 PRK00300 gmk guanylate kinase; 96.1 0.0044 9.6E-08 52.4 2.8 24 182-205 5-28 (205)
119 COG1936 Predicted nucleotide k 96.1 0.0043 9.4E-08 50.9 2.5 20 184-203 2-21 (180)
120 PRK08116 hypothetical protein; 96.1 0.025 5.4E-07 50.3 7.6 46 184-237 116-161 (268)
121 cd01133 F1-ATPase_beta F1 ATP 96.1 0.0085 1.8E-07 53.2 4.6 52 182-235 69-122 (274)
122 PF07693 KAP_NTPase: KAP famil 96.0 0.015 3.3E-07 52.7 6.4 76 165-240 2-83 (325)
123 PF04665 Pox_A32: Poxvirus A32 96.0 0.0074 1.6E-07 52.6 4.1 37 182-220 13-49 (241)
124 PF00625 Guanylate_kin: Guanyl 96.0 0.0071 1.5E-07 50.4 3.9 37 182-220 2-38 (183)
125 PRK14961 DNA polymerase III su 96.0 0.0094 2E-07 55.4 5.0 45 159-204 16-60 (363)
126 PRK14949 DNA polymerase III su 96.0 0.021 4.5E-07 58.4 7.6 45 159-205 16-61 (944)
127 PRK03846 adenylylsulfate kinas 96.0 0.0063 1.4E-07 51.5 3.4 25 180-204 22-46 (198)
128 TIGR00176 mobB molybdopterin-g 96.0 0.0062 1.4E-07 49.6 3.2 38 184-223 1-39 (155)
129 PRK06893 DNA replication initi 96.0 0.005 1.1E-07 53.4 2.8 38 182-221 39-76 (229)
130 PRK05439 pantothenate kinase; 96.0 0.012 2.5E-07 53.5 5.2 26 179-204 83-108 (311)
131 TIGR00362 DnaA chromosomal rep 96.0 0.05 1.1E-06 51.2 9.7 24 182-205 136-159 (405)
132 PRK14722 flhF flagellar biosyn 96.0 0.026 5.7E-07 52.5 7.6 23 182-204 137-159 (374)
133 TIGR03346 chaperone_ClpB ATP-d 96.0 0.008 1.7E-07 62.0 4.6 44 159-204 173-216 (852)
134 cd00071 GMPK Guanosine monopho 96.0 0.0057 1.2E-07 48.6 2.8 22 184-205 1-22 (137)
135 PRK04301 radA DNA repair and r 95.9 0.027 5.8E-07 51.3 7.5 60 173-232 93-156 (317)
136 cd01878 HflX HflX subfamily. 95.9 0.03 6.5E-07 47.1 7.4 27 180-206 39-65 (204)
137 PRK14530 adenylate kinase; Pro 95.9 0.0057 1.2E-07 52.4 2.8 21 184-204 5-25 (215)
138 PRK13947 shikimate kinase; Pro 95.9 0.0057 1.2E-07 50.1 2.6 21 184-204 3-23 (171)
139 PRK10787 DNA-binding ATP-depen 95.9 0.0088 1.9E-07 61.0 4.5 47 158-204 321-371 (784)
140 PRK08084 DNA replication initi 95.9 0.023 4.9E-07 49.5 6.5 23 182-204 45-67 (235)
141 TIGR00763 lon ATP-dependent pr 95.9 0.0092 2E-07 60.9 4.6 46 159-204 320-369 (775)
142 KOG1532 GTPase XAB1, interacts 95.9 0.0063 1.4E-07 53.6 2.9 57 180-238 17-84 (366)
143 TIGR02236 recomb_radA DNA repa 95.9 0.033 7.2E-07 50.4 7.8 60 173-232 86-149 (310)
144 PLN02318 phosphoribulokinase/u 95.9 0.011 2.3E-07 57.9 4.6 35 171-205 54-88 (656)
145 cd00464 SK Shikimate kinase (S 95.9 0.0062 1.3E-07 48.8 2.6 20 185-204 2-21 (154)
146 PRK10078 ribose 1,5-bisphospho 95.9 0.0069 1.5E-07 50.6 3.0 23 183-205 3-25 (186)
147 COG1419 FlhF Flagellar GTP-bin 95.8 0.0096 2.1E-07 55.4 4.1 24 181-204 202-226 (407)
148 cd02021 GntK Gluconate kinase 95.8 0.0057 1.2E-07 49.0 2.4 22 184-205 1-22 (150)
149 PRK14955 DNA polymerase III su 95.8 0.011 2.4E-07 55.6 4.5 45 159-204 16-60 (397)
150 PRK14087 dnaA chromosomal repl 95.8 0.046 9.9E-07 52.3 8.7 49 182-238 141-191 (450)
151 TIGR00073 hypB hydrogenase acc 95.8 0.0078 1.7E-07 51.2 3.2 26 180-205 20-45 (207)
152 PRK13695 putative NTPase; Prov 95.8 0.0079 1.7E-07 49.6 3.1 22 184-205 2-23 (174)
153 PF00005 ABC_tran: ABC transpo 95.8 0.008 1.7E-07 47.2 3.0 23 182-204 11-33 (137)
154 PF01583 APS_kinase: Adenylyls 95.8 0.0092 2E-07 48.6 3.3 23 182-204 2-24 (156)
155 PF05659 RPW8: Arabidopsis bro 95.8 0.28 6.1E-06 39.5 11.9 105 3-130 9-114 (147)
156 PRK13949 shikimate kinase; Pro 95.8 0.0068 1.5E-07 50.0 2.6 21 184-204 3-23 (169)
157 cd00227 CPT Chloramphenicol (C 95.8 0.0074 1.6E-07 49.9 2.8 23 183-205 3-25 (175)
158 PF00910 RNA_helicase: RNA hel 95.8 0.0056 1.2E-07 46.5 1.9 20 185-204 1-20 (107)
159 COG2909 MalT ATP-dependent tra 95.7 0.2 4.4E-06 50.6 13.1 69 167-239 23-92 (894)
160 TIGR00764 lon_rel lon-related 95.7 0.027 5.8E-07 55.9 7.0 75 159-240 18-93 (608)
161 PRK14956 DNA polymerase III su 95.7 0.011 2.4E-07 56.6 4.1 44 159-204 18-62 (484)
162 TIGR03689 pup_AAA proteasome A 95.7 0.016 3.5E-07 56.0 5.3 47 159-205 182-239 (512)
163 PF00406 ADK: Adenylate kinase 95.7 0.02 4.3E-07 46.0 5.1 18 187-204 1-18 (151)
164 PTZ00454 26S protease regulato 95.7 0.012 2.7E-07 55.2 4.4 47 159-205 145-202 (398)
165 PRK05703 flhF flagellar biosyn 95.7 0.037 8E-07 52.5 7.5 23 182-204 221-243 (424)
166 PF00448 SRP54: SRP54-type pro 95.7 0.0096 2.1E-07 50.4 3.3 54 182-238 1-56 (196)
167 PRK11034 clpA ATP-dependent Cl 95.7 0.013 2.7E-07 59.5 4.6 44 159-204 186-229 (758)
168 PF07726 AAA_3: ATPase family 95.7 0.0077 1.7E-07 47.2 2.4 28 185-214 2-29 (131)
169 PF00308 Bac_DnaA: Bacterial d 95.7 0.14 3E-06 44.1 10.4 71 161-239 11-85 (219)
170 PF03266 NTPase_1: NTPase; In 95.7 0.0079 1.7E-07 49.7 2.6 21 185-205 2-22 (168)
171 TIGR01313 therm_gnt_kin carboh 95.7 0.0066 1.4E-07 49.4 2.1 21 185-205 1-21 (163)
172 COG3899 Predicted ATPase [Gene 95.7 0.048 1E-06 56.2 8.7 79 160-240 1-86 (849)
173 TIGR00041 DTMP_kinase thymidyl 95.7 0.028 6E-07 47.1 5.9 23 183-205 4-26 (195)
174 COG1100 GTPase SAR1 and relate 95.7 0.0081 1.8E-07 51.1 2.7 24 183-206 6-29 (219)
175 PRK00149 dnaA chromosomal repl 95.6 0.082 1.8E-06 50.6 9.8 30 181-212 147-176 (450)
176 cd04139 RalA_RalB RalA/RalB su 95.6 0.0092 2E-07 47.9 2.8 23 184-206 2-24 (164)
177 PRK14957 DNA polymerase III su 95.6 0.013 2.8E-07 57.2 4.3 45 159-204 16-60 (546)
178 COG0237 CoaE Dephospho-CoA kin 95.6 0.0097 2.1E-07 50.6 3.0 23 182-204 2-24 (201)
179 TIGR00750 lao LAO/AO transport 95.6 0.019 4.1E-07 51.9 5.1 36 169-204 21-56 (300)
180 PRK08727 hypothetical protein; 95.6 0.028 6.2E-07 48.8 6.0 39 182-222 41-79 (233)
181 cd02027 APSK Adenosine 5'-phos 95.6 0.0079 1.7E-07 48.5 2.4 21 184-204 1-21 (149)
182 PRK12726 flagellar biosynthesi 95.6 0.05 1.1E-06 50.6 7.8 24 181-204 205-228 (407)
183 PRK10463 hydrogenase nickel in 95.6 0.026 5.7E-07 50.5 5.8 25 180-204 102-126 (290)
184 COG2019 AdkA Archaeal adenylat 95.6 0.011 2.3E-07 48.4 3.0 23 182-204 4-26 (189)
185 COG0563 Adk Adenylate kinase a 95.6 0.009 2E-07 49.8 2.6 22 184-205 2-23 (178)
186 COG3640 CooC CO dehydrogenase 95.6 0.016 3.4E-07 50.1 4.0 21 184-204 2-22 (255)
187 PRK13765 ATP-dependent proteas 95.6 0.025 5.4E-07 56.2 6.1 75 159-239 31-105 (637)
188 PRK05057 aroK shikimate kinase 95.6 0.01 2.2E-07 49.1 2.9 23 182-204 4-26 (172)
189 COG1102 Cmk Cytidylate kinase 95.6 0.0094 2E-07 48.5 2.5 42 184-238 2-43 (179)
190 PRK12727 flagellar biosynthesi 95.6 0.03 6.6E-07 54.2 6.4 24 181-204 349-372 (559)
191 PRK09435 membrane ATPase/prote 95.6 0.02 4.4E-07 52.4 5.0 36 169-204 43-78 (332)
192 COG0194 Gmk Guanylate kinase [ 95.6 0.016 3.5E-07 48.2 4.0 25 182-206 4-28 (191)
193 COG1124 DppF ABC-type dipeptid 95.5 0.017 3.6E-07 50.1 4.2 23 182-204 33-55 (252)
194 PF03308 ArgK: ArgK protein; 95.5 0.022 4.8E-07 49.9 5.0 66 167-232 14-79 (266)
195 PRK06761 hypothetical protein; 95.5 0.022 4.8E-07 50.9 5.1 24 183-206 4-27 (282)
196 PTZ00361 26 proteosome regulat 95.5 0.017 3.7E-07 54.9 4.6 52 159-212 183-245 (438)
197 cd00820 PEPCK_HprK Phosphoenol 95.5 0.012 2.7E-07 44.7 3.0 22 182-203 15-36 (107)
198 TIGR01287 nifH nitrogenase iro 95.5 0.0088 1.9E-07 53.2 2.5 21 183-203 1-21 (275)
199 TIGR02880 cbbX_cfxQ probable R 95.5 0.022 4.9E-07 51.0 5.1 45 160-204 23-80 (284)
200 PRK14960 DNA polymerase III su 95.5 0.018 3.8E-07 57.1 4.7 45 159-204 15-59 (702)
201 PRK10536 hypothetical protein; 95.5 0.025 5.4E-07 49.8 5.1 43 159-205 55-97 (262)
202 PRK05896 DNA polymerase III su 95.5 0.018 3.9E-07 56.6 4.7 45 159-204 16-60 (605)
203 PF01926 MMR_HSR1: 50S ribosom 95.5 0.012 2.6E-07 45.0 2.8 21 185-205 2-22 (116)
204 PRK14493 putative bifunctional 95.5 0.011 2.4E-07 52.7 3.0 22 183-204 2-23 (274)
205 PRK05201 hslU ATP-dependent pr 95.5 0.019 4.1E-07 54.0 4.7 77 159-237 15-107 (443)
206 TIGR00064 ftsY signal recognit 95.5 0.032 6.8E-07 49.8 5.8 25 180-204 70-94 (272)
207 PLN03186 DNA repair protein RA 95.5 0.04 8.7E-07 50.7 6.6 66 171-237 112-181 (342)
208 PRK14527 adenylate kinase; Pro 95.5 0.013 2.7E-07 49.2 3.1 24 181-204 5-28 (191)
209 cd04163 Era Era subfamily. Er 95.4 0.014 3.1E-07 46.5 3.3 24 182-205 3-26 (168)
210 PRK12338 hypothetical protein; 95.4 0.057 1.2E-06 49.1 7.4 24 182-205 4-27 (319)
211 PRK13531 regulatory ATPase Rav 95.4 0.019 4E-07 55.0 4.5 41 160-204 21-61 (498)
212 PRK13976 thymidylate kinase; P 95.4 0.049 1.1E-06 46.6 6.7 50 184-235 2-53 (209)
213 PRK12608 transcription termina 95.4 0.026 5.7E-07 52.3 5.3 71 167-240 119-192 (380)
214 PF13521 AAA_28: AAA domain; P 95.4 0.0092 2E-07 48.6 2.1 21 185-205 2-22 (163)
215 PRK04182 cytidylate kinase; Pr 95.4 0.012 2.6E-07 48.4 2.9 22 184-205 2-23 (180)
216 PRK12723 flagellar biosynthesi 95.4 0.14 3E-06 48.0 10.1 24 181-204 173-196 (388)
217 COG1116 TauB ABC-type nitrate/ 95.4 0.012 2.6E-07 51.2 2.9 23 182-204 29-51 (248)
218 cd03116 MobB Molybdenum is an 95.4 0.013 2.9E-07 47.8 3.0 22 183-204 2-23 (159)
219 COG1120 FepC ABC-type cobalami 95.4 0.012 2.7E-07 51.7 3.0 24 181-204 27-50 (258)
220 PRK06620 hypothetical protein; 95.4 0.032 6.9E-07 47.9 5.5 24 183-206 45-68 (214)
221 TIGR02239 recomb_RAD51 DNA rep 95.4 0.046 9.9E-07 49.8 6.8 59 171-229 85-147 (316)
222 cd01131 PilT Pilus retraction 95.4 0.018 3.9E-07 48.7 3.9 22 183-204 2-23 (198)
223 TIGR02238 recomb_DMC1 meiotic 95.4 0.047 1E-06 49.7 6.8 64 173-237 87-154 (313)
224 PRK08356 hypothetical protein; 95.4 0.014 3E-07 49.3 3.1 21 182-202 5-25 (195)
225 PF06309 Torsin: Torsin; Inte 95.4 0.033 7.1E-07 43.6 4.9 46 159-204 25-75 (127)
226 PLN02796 D-glycerate 3-kinase 95.4 0.014 3E-07 53.5 3.3 25 180-204 98-122 (347)
227 cd03255 ABC_MJ0796_Lo1CDE_FtsE 95.3 0.013 2.8E-07 50.1 2.9 23 182-204 30-52 (218)
228 TIGR02173 cyt_kin_arch cytidyl 95.3 0.013 2.9E-07 47.7 2.9 21 184-204 2-22 (171)
229 PRK13230 nitrogenase reductase 95.3 0.013 2.7E-07 52.3 2.9 20 183-202 2-21 (279)
230 PLN02200 adenylate kinase fami 95.3 0.016 3.4E-07 50.5 3.4 24 181-204 42-65 (234)
231 cd04155 Arl3 Arl3 subfamily. 95.3 0.013 2.8E-07 47.7 2.7 25 181-205 13-37 (173)
232 PRK14964 DNA polymerase III su 95.3 0.02 4.3E-07 55.2 4.3 44 159-204 13-57 (491)
233 PRK09825 idnK D-gluconate kina 95.3 0.013 2.9E-07 48.6 2.8 23 183-205 4-26 (176)
234 cd03225 ABC_cobalt_CbiO_domain 95.3 0.014 3E-07 49.7 3.0 23 182-204 27-49 (211)
235 cd01862 Rab7 Rab7 subfamily. 95.3 0.014 3E-07 47.4 2.8 22 184-205 2-23 (172)
236 PF08298 AAA_PrkA: PrkA AAA do 95.3 0.025 5.5E-07 51.8 4.7 47 158-204 60-110 (358)
237 PRK01184 hypothetical protein; 95.3 0.014 3.1E-07 48.5 2.9 19 183-201 2-20 (184)
238 cd02117 NifH_like This family 95.3 0.012 2.7E-07 50.1 2.6 20 183-202 1-20 (212)
239 PLN02674 adenylate kinase 95.3 0.11 2.5E-06 45.4 8.7 23 182-204 31-53 (244)
240 PRK12339 2-phosphoglycerate ki 95.3 0.016 3.4E-07 49.1 3.2 24 182-205 3-26 (197)
241 TIGR00231 small_GTP small GTP- 95.3 0.015 3.2E-07 45.7 2.9 23 184-206 3-25 (161)
242 cd04119 RJL RJL (RabJ-Like) su 95.3 0.015 3.2E-07 46.8 2.9 21 185-205 3-23 (168)
243 PRK13232 nifH nitrogenase redu 95.3 0.013 2.8E-07 52.1 2.7 21 183-203 2-22 (273)
244 TIGR00960 3a0501s02 Type II (G 95.3 0.014 3.1E-07 49.8 2.9 23 182-204 29-51 (216)
245 smart00173 RAS Ras subfamily o 95.3 0.015 3.2E-07 46.9 2.8 22 184-205 2-23 (164)
246 PLN03187 meiotic recombination 95.3 0.05 1.1E-06 50.1 6.6 62 175-237 119-184 (344)
247 COG1484 DnaC DNA replication p 95.3 0.081 1.8E-06 46.7 7.7 50 181-238 104-153 (254)
248 PRK14737 gmk guanylate kinase; 95.2 0.023 5E-07 47.6 4.1 25 181-205 3-27 (186)
249 TIGR01166 cbiO cobalt transpor 95.2 0.015 3.3E-07 48.6 2.9 23 182-204 18-40 (190)
250 cd02040 NifH NifH gene encodes 95.2 0.014 3E-07 51.6 2.8 22 183-204 2-23 (270)
251 PRK09087 hypothetical protein; 95.2 0.015 3.2E-07 50.4 2.9 24 182-205 44-67 (226)
252 PRK11889 flhF flagellar biosyn 95.2 0.015 3.3E-07 54.3 3.1 24 181-204 240-263 (436)
253 cd03297 ABC_ModC_molybdenum_tr 95.2 0.016 3.5E-07 49.4 3.1 24 180-204 22-45 (214)
254 PRK14958 DNA polymerase III su 95.2 0.021 4.6E-07 55.4 4.3 45 159-204 16-60 (509)
255 TIGR00602 rad24 checkpoint pro 95.2 0.024 5.1E-07 56.3 4.6 48 158-205 83-133 (637)
256 cd03229 ABC_Class3 This class 95.2 0.016 3.5E-07 48.0 3.0 23 182-204 26-48 (178)
257 PLN02348 phosphoribulokinase 95.2 0.026 5.5E-07 52.6 4.5 26 179-204 46-71 (395)
258 cd02022 DPCK Dephospho-coenzym 95.2 0.013 2.8E-07 48.8 2.4 21 184-204 1-21 (179)
259 PRK00698 tmk thymidylate kinas 95.2 0.041 8.9E-07 46.3 5.5 23 183-205 4-26 (205)
260 COG1763 MobB Molybdopterin-gua 95.2 0.015 3.2E-07 47.6 2.6 23 182-204 2-24 (161)
261 PRK13946 shikimate kinase; Pro 95.2 0.014 3.1E-07 48.6 2.7 23 182-204 10-32 (184)
262 cd04113 Rab4 Rab4 subfamily. 95.2 0.016 3.5E-07 46.6 2.9 21 185-205 3-23 (161)
263 PF10662 PduV-EutP: Ethanolami 95.2 0.018 3.9E-07 46.1 3.0 53 183-236 2-60 (143)
264 smart00175 RAB Rab subfamily o 95.2 0.017 3.6E-07 46.4 2.9 22 185-206 3-24 (164)
265 TIGR02640 gas_vesic_GvpN gas v 95.2 0.043 9.2E-07 48.6 5.7 54 168-230 11-64 (262)
266 COG0468 RecA RecA/RadA recombi 95.2 0.067 1.4E-06 47.7 6.9 55 175-231 53-107 (279)
267 PRK13768 GTPase; Provisional 95.2 0.016 3.6E-07 51.0 3.0 23 182-204 2-24 (253)
268 cd01983 Fer4_NifH The Fer4_Nif 95.2 0.015 3.3E-07 42.1 2.4 21 184-204 1-21 (99)
269 cd00154 Rab Rab family. Rab G 95.2 0.017 3.7E-07 45.6 2.9 22 185-206 3-24 (159)
270 cd00879 Sar1 Sar1 subfamily. 95.1 0.033 7.2E-07 46.2 4.7 24 182-205 19-42 (190)
271 COG1126 GlnQ ABC-type polar am 95.1 0.018 3.8E-07 49.2 3.0 24 181-204 27-50 (240)
272 cd04159 Arl10_like Arl10-like 95.1 0.016 3.4E-07 45.9 2.6 21 185-205 2-22 (159)
273 PRK14490 putative bifunctional 95.1 0.026 5.5E-07 52.6 4.3 24 181-204 4-27 (369)
274 cd03261 ABC_Org_Solvent_Resist 95.1 0.017 3.6E-07 50.1 3.0 23 182-204 26-48 (235)
275 PRK14970 DNA polymerase III su 95.1 0.028 6.1E-07 52.1 4.6 45 159-204 17-61 (367)
276 cd01130 VirB11-like_ATPase Typ 95.1 0.033 7.2E-07 46.5 4.6 35 167-204 13-47 (186)
277 cd03263 ABC_subfamily_A The AB 95.1 0.017 3.8E-07 49.4 3.0 23 182-204 28-50 (220)
278 PRK05642 DNA replication initi 95.1 0.071 1.5E-06 46.4 6.8 37 182-220 45-81 (234)
279 cd03293 ABC_NrtD_SsuB_transpor 95.1 0.017 3.8E-07 49.4 3.0 24 182-205 30-53 (220)
280 PRK10416 signal recognition pa 95.1 0.019 4.2E-07 52.3 3.4 24 181-204 113-136 (318)
281 cd00876 Ras Ras family. The R 95.1 0.018 3.9E-07 45.9 2.9 21 185-205 2-22 (160)
282 PF05673 DUF815: Protein of un 95.1 0.029 6.3E-07 48.9 4.3 49 156-205 24-75 (249)
283 cd03238 ABC_UvrA The excision 95.1 0.018 3.9E-07 47.9 2.9 23 182-204 21-43 (176)
284 cd03269 ABC_putative_ATPase Th 95.1 0.018 3.8E-07 49.0 2.9 24 182-205 26-49 (210)
285 PRK03731 aroL shikimate kinase 95.1 0.017 3.7E-07 47.4 2.7 21 184-204 4-24 (171)
286 cd04138 H_N_K_Ras_like H-Ras/N 95.1 0.018 3.9E-07 46.0 2.8 22 184-205 3-24 (162)
287 PRK13236 nitrogenase reductase 95.1 0.02 4.3E-07 51.6 3.4 23 180-202 4-26 (296)
288 TIGR02315 ABC_phnC phosphonate 95.1 0.018 3.8E-07 50.1 2.9 23 182-204 28-50 (243)
289 TIGR02673 FtsE cell division A 95.1 0.018 3.9E-07 49.0 2.9 23 182-204 28-50 (214)
290 PRK13233 nifH nitrogenase redu 95.0 0.017 3.8E-07 51.3 2.9 20 183-202 3-22 (275)
291 TIGR02012 tigrfam_recA protein 95.0 0.049 1.1E-06 49.6 5.8 44 177-222 50-93 (321)
292 cd03256 ABC_PhnC_transporter A 95.0 0.018 3.9E-07 49.9 2.9 23 182-204 27-49 (241)
293 cd03114 ArgK-like The function 95.0 0.015 3.3E-07 46.8 2.3 21 184-204 1-21 (148)
294 KOG0991 Replication factor C, 95.0 0.028 6.1E-07 48.6 3.9 44 159-204 27-74 (333)
295 cd03235 ABC_Metallic_Cations A 95.0 0.018 4E-07 49.0 2.9 24 182-205 25-48 (213)
296 TIGR00959 ffh signal recogniti 95.0 0.17 3.7E-06 48.0 9.6 24 181-204 98-121 (428)
297 cd03259 ABC_Carb_Solutes_like 95.0 0.019 4.1E-07 48.9 3.0 23 182-204 26-48 (213)
298 cd00983 recA RecA is a bacter 95.0 0.047 1E-06 49.8 5.6 46 178-225 51-96 (325)
299 TIGR02397 dnaX_nterm DNA polym 95.0 0.037 8E-07 50.8 5.1 45 159-204 14-58 (355)
300 PF13086 AAA_11: AAA domain; P 95.0 0.034 7.3E-07 47.3 4.5 52 184-235 19-75 (236)
301 PRK05342 clpX ATP-dependent pr 95.0 0.028 6.1E-07 53.0 4.3 46 159-204 71-130 (412)
302 PRK08099 bifunctional DNA-bind 95.0 0.017 3.7E-07 54.3 2.8 26 180-205 217-242 (399)
303 PRK13948 shikimate kinase; Pro 95.0 0.02 4.4E-07 47.9 3.0 24 181-204 9-32 (182)
304 cd01428 ADK Adenylate kinase ( 95.0 0.018 3.8E-07 48.1 2.6 21 185-205 2-22 (194)
305 PRK10584 putative ABC transpor 95.0 0.019 4.2E-07 49.4 3.0 23 182-204 36-58 (228)
306 cd03222 ABC_RNaseL_inhibitor T 95.0 0.018 4E-07 47.9 2.7 23 182-204 25-47 (177)
307 COG1703 ArgK Putative periplas 95.0 0.029 6.2E-07 50.1 4.0 67 168-234 37-103 (323)
308 PRK12422 chromosomal replicati 95.0 0.058 1.3E-06 51.5 6.4 24 182-205 141-164 (445)
309 PRK13541 cytochrome c biogenes 95.0 0.02 4.3E-07 48.2 2.9 24 182-205 26-49 (195)
310 cd03292 ABC_FtsE_transporter F 95.0 0.02 4.4E-07 48.7 3.0 24 182-205 27-50 (214)
311 PRK14532 adenylate kinase; Pro 95.0 0.018 4E-07 48.0 2.6 20 185-204 3-22 (188)
312 PRK14721 flhF flagellar biosyn 95.0 0.13 2.8E-06 48.6 8.6 24 181-204 190-213 (420)
313 CHL00081 chlI Mg-protoporyphyr 95.0 0.023 5E-07 52.4 3.5 45 158-204 16-60 (350)
314 cd03260 ABC_PstB_phosphate_tra 95.0 0.02 4.4E-07 49.2 3.0 23 182-204 26-48 (227)
315 cd03226 ABC_cobalt_CbiO_domain 94.9 0.02 4.4E-07 48.4 2.9 23 182-204 26-48 (205)
316 TIGR03864 PQQ_ABC_ATP ABC tran 94.9 0.02 4.4E-07 49.6 3.0 23 182-204 27-49 (236)
317 cd04123 Rab21 Rab21 subfamily. 94.9 0.021 4.6E-07 45.6 2.9 22 184-205 2-23 (162)
318 cd03115 SRP The signal recogni 94.9 0.021 4.5E-07 47.0 2.9 21 184-204 2-22 (173)
319 cd03296 ABC_CysA_sulfate_impor 94.9 0.02 4.4E-07 49.7 2.9 24 182-205 28-51 (239)
320 PF02562 PhoH: PhoH-like prote 94.9 0.038 8.3E-07 47.0 4.5 53 163-219 4-56 (205)
321 COG1136 SalX ABC-type antimicr 94.9 0.021 4.5E-07 49.3 2.9 23 182-204 31-53 (226)
322 cd03264 ABC_drug_resistance_li 94.9 0.019 4E-07 48.9 2.6 21 184-204 27-47 (211)
323 cd01876 YihA_EngB The YihA (En 94.9 0.019 4E-07 45.9 2.5 20 185-204 2-21 (170)
324 PRK13231 nitrogenase reductase 94.9 0.021 4.5E-07 50.4 3.0 23 182-204 2-24 (264)
325 TIGR01425 SRP54_euk signal rec 94.9 0.037 8E-07 52.4 4.8 24 181-204 99-122 (429)
326 cd03224 ABC_TM1139_LivF_branch 94.9 0.022 4.7E-07 48.8 3.1 23 182-204 26-48 (222)
327 cd02026 PRK Phosphoribulokinas 94.9 0.017 3.6E-07 51.6 2.4 21 184-204 1-21 (273)
328 PRK14954 DNA polymerase III su 94.9 0.03 6.5E-07 55.5 4.3 45 159-204 16-60 (620)
329 cd01673 dNK Deoxyribonucleosid 94.9 0.017 3.7E-07 48.4 2.3 22 184-205 1-22 (193)
330 cd01864 Rab19 Rab19 subfamily. 94.9 0.021 4.6E-07 46.2 2.8 23 182-204 3-25 (165)
331 TIGR02211 LolD_lipo_ex lipopro 94.9 0.021 4.6E-07 48.9 3.0 23 182-204 31-53 (221)
332 TIGR02639 ClpA ATP-dependent C 94.9 0.053 1.2E-06 55.1 6.2 46 159-204 454-506 (731)
333 PF08423 Rad51: Rad51; InterP 94.9 0.07 1.5E-06 47.1 6.3 63 173-236 29-95 (256)
334 PRK13235 nifH nitrogenase redu 94.9 0.019 4E-07 51.1 2.7 20 183-202 2-21 (274)
335 cd00878 Arf_Arl Arf (ADP-ribos 94.9 0.022 4.7E-07 45.7 2.8 22 185-206 2-23 (158)
336 PRK06067 flagellar accessory p 94.9 0.083 1.8E-06 45.7 6.7 46 175-223 18-64 (234)
337 PRK13538 cytochrome c biogenes 94.9 0.022 4.7E-07 48.3 2.9 24 182-205 27-50 (204)
338 PF06564 YhjQ: YhjQ protein; 94.9 0.021 4.5E-07 49.9 2.8 22 183-204 2-24 (243)
339 cd03257 ABC_NikE_OppD_transpor 94.9 0.021 4.6E-07 49.0 2.9 24 182-205 31-54 (228)
340 cd03265 ABC_DrrA DrrA is the A 94.9 0.022 4.8E-07 48.8 3.0 24 182-205 26-49 (220)
341 PF00071 Ras: Ras family; Int 94.9 0.022 4.8E-07 45.7 2.8 22 185-206 2-23 (162)
342 PTZ00088 adenylate kinase 1; P 94.9 0.02 4.3E-07 49.7 2.7 21 184-204 8-28 (229)
343 PRK02496 adk adenylate kinase; 94.8 0.025 5.3E-07 47.1 3.1 21 184-204 3-23 (184)
344 TIGR02528 EutP ethanolamine ut 94.8 0.023 5E-07 44.7 2.8 23 184-206 2-24 (142)
345 PRK08691 DNA polymerase III su 94.8 0.029 6.3E-07 55.9 4.1 45 159-204 16-60 (709)
346 PF01695 IstB_IS21: IstB-like 94.8 0.082 1.8E-06 44.0 6.2 36 182-219 47-82 (178)
347 TIGR02902 spore_lonB ATP-depen 94.8 0.033 7.2E-07 54.4 4.4 43 160-204 66-108 (531)
348 cd03237 ABC_RNaseL_inhibitor_d 94.8 0.022 4.7E-07 50.0 2.9 24 182-205 25-48 (246)
349 PRK14969 DNA polymerase III su 94.8 0.033 7.1E-07 54.3 4.4 45 159-204 16-60 (527)
350 TIGR02030 BchI-ChlI magnesium 94.8 0.036 7.7E-07 51.0 4.4 44 159-204 4-47 (337)
351 cd04124 RabL2 RabL2 subfamily. 94.8 0.023 5E-07 45.9 2.9 20 185-204 3-22 (161)
352 TIGR03877 thermo_KaiC_1 KaiC d 94.8 0.1 2.2E-06 45.4 7.1 56 173-233 12-68 (237)
353 PRK10247 putative ABC transpor 94.8 0.023 5E-07 48.9 3.0 24 182-205 33-56 (225)
354 PF03215 Rad17: Rad17 cell cyc 94.8 0.043 9.3E-07 53.3 5.1 57 159-219 19-78 (519)
355 TIGR01281 DPOR_bchL light-inde 94.8 0.021 4.6E-07 50.5 2.8 19 184-202 2-20 (268)
356 TIGR03608 L_ocin_972_ABC putat 94.8 0.024 5.1E-07 48.0 3.0 23 182-204 24-46 (206)
357 cd01898 Obg Obg subfamily. Th 94.8 0.022 4.7E-07 46.1 2.7 21 185-205 3-23 (170)
358 PRK10865 protein disaggregatio 94.8 0.053 1.1E-06 56.0 6.0 46 159-204 568-620 (857)
359 COG1223 Predicted ATPase (AAA+ 94.8 0.043 9.4E-07 48.2 4.5 50 157-206 119-175 (368)
360 PRK15453 phosphoribulokinase; 94.8 0.026 5.6E-07 50.3 3.3 25 180-204 3-27 (290)
361 TIGR03574 selen_PSTK L-seryl-t 94.8 0.02 4.4E-07 50.1 2.6 20 185-204 2-21 (249)
362 PRK11629 lolD lipoprotein tran 94.8 0.023 5.1E-07 49.1 3.0 23 182-204 35-57 (233)
363 cd03258 ABC_MetN_methionine_tr 94.8 0.023 5E-07 49.1 2.9 23 182-204 31-53 (233)
364 PRK15177 Vi polysaccharide exp 94.8 0.024 5.1E-07 48.6 2.9 24 182-205 13-36 (213)
365 PF03193 DUF258: Protein of un 94.8 0.048 1E-06 44.6 4.5 36 166-206 24-59 (161)
366 KOG3079 Uridylate kinase/adeny 94.8 0.13 2.9E-06 42.7 7.1 44 180-236 6-49 (195)
367 cd00157 Rho Rho (Ras homology) 94.8 0.024 5.2E-07 45.8 2.9 22 185-206 3-24 (171)
368 PLN03046 D-glycerate 3-kinase; 94.8 0.029 6.3E-07 52.7 3.6 25 180-204 210-234 (460)
369 PRK12323 DNA polymerase III su 94.8 0.032 6.8E-07 55.3 4.0 45 159-204 16-60 (700)
370 PRK11248 tauB taurine transpor 94.8 0.024 5.1E-07 50.0 3.0 23 182-204 27-49 (255)
371 PF01078 Mg_chelatase: Magnesi 94.8 0.054 1.2E-06 46.1 4.9 42 159-204 3-44 (206)
372 TIGR02770 nickel_nikD nickel i 94.7 0.024 5.2E-07 49.0 2.9 24 182-205 12-35 (230)
373 PRK14531 adenylate kinase; Pro 94.7 0.025 5.4E-07 47.2 2.9 22 183-204 3-24 (183)
374 cd03301 ABC_MalK_N The N-termi 94.7 0.025 5.4E-07 48.1 3.0 24 182-205 26-49 (213)
375 TIGR01184 ntrCD nitrate transp 94.7 0.025 5.4E-07 49.0 3.0 23 182-204 11-33 (230)
376 PF02492 cobW: CobW/HypB/UreG, 94.7 0.096 2.1E-06 43.4 6.4 22 183-204 1-22 (178)
377 cd03219 ABC_Mj1267_LivG_branch 94.7 0.024 5.2E-07 49.0 2.9 23 182-204 26-48 (236)
378 PRK14951 DNA polymerase III su 94.7 0.04 8.7E-07 54.6 4.6 43 159-202 16-58 (618)
379 PRK14952 DNA polymerase III su 94.7 0.037 8E-07 54.5 4.3 44 159-204 13-57 (584)
380 cd04136 Rap_like Rap-like subf 94.7 0.026 5.7E-07 45.2 2.8 21 184-204 3-23 (163)
381 TIGR01243 CDC48 AAA family ATP 94.7 0.032 6.9E-07 56.7 4.1 47 159-205 178-235 (733)
382 PTZ00035 Rad51 protein; Provis 94.7 0.11 2.5E-06 47.7 7.3 59 171-229 107-169 (337)
383 TIGR00455 apsK adenylylsulfate 94.7 0.032 6.8E-07 46.4 3.4 25 180-204 16-40 (184)
384 cd04171 SelB SelB subfamily. 94.7 0.027 5.7E-07 45.1 2.9 21 184-204 2-22 (164)
385 PRK09354 recA recombinase A; P 94.7 0.073 1.6E-06 49.0 6.0 47 177-225 55-101 (349)
386 PRK08181 transposase; Validate 94.7 0.13 2.7E-06 45.8 7.3 34 184-219 108-141 (269)
387 cd01860 Rab5_related Rab5-rela 94.7 0.027 5.9E-07 45.2 2.9 23 184-206 3-25 (163)
388 cd03218 ABC_YhbG The ABC trans 94.7 0.026 5.7E-07 48.7 2.9 23 182-204 26-48 (232)
389 PRK14723 flhF flagellar biosyn 94.7 0.14 3.1E-06 51.8 8.4 23 182-204 185-207 (767)
390 PRK11124 artP arginine transpo 94.7 0.026 5.7E-07 49.1 3.0 24 182-205 28-51 (242)
391 TIGR01241 FtsH_fam ATP-depende 94.7 0.038 8.3E-07 53.5 4.4 47 159-205 55-111 (495)
392 PRK07940 DNA polymerase III su 94.7 0.047 1E-06 51.3 4.8 46 159-204 5-58 (394)
393 smart00072 GuKc Guanylate kina 94.6 0.035 7.6E-07 46.3 3.6 24 182-205 2-25 (184)
394 COG4608 AppF ABC-type oligopep 94.6 0.041 8.9E-07 48.5 4.1 24 181-204 38-61 (268)
395 TIGR01978 sufC FeS assembly AT 94.6 0.026 5.6E-07 49.0 2.9 24 182-205 26-49 (243)
396 cd04160 Arfrp1 Arfrp1 subfamil 94.6 0.025 5.4E-07 45.7 2.6 20 185-204 2-21 (167)
397 COG0541 Ffh Signal recognition 94.6 0.33 7.2E-06 45.7 10.1 70 167-239 78-156 (451)
398 cd01897 NOG NOG1 is a nucleola 94.6 0.028 6.1E-07 45.4 2.9 23 183-205 1-23 (168)
399 PRK07429 phosphoribulokinase; 94.6 0.03 6.6E-07 51.2 3.4 25 180-204 6-30 (327)
400 PRK13540 cytochrome c biogenes 94.6 0.028 6.1E-07 47.4 3.0 25 181-205 26-50 (200)
401 TIGR01189 ccmA heme ABC export 94.6 0.028 6.1E-07 47.3 3.0 25 181-205 25-49 (198)
402 TIGR00017 cmk cytidylate kinas 94.6 0.029 6.3E-07 48.3 3.1 22 183-204 3-24 (217)
403 cd03232 ABC_PDR_domain2 The pl 94.6 0.028 6.2E-07 47.1 2.9 23 182-204 33-55 (192)
404 TIGR00101 ureG urease accessor 94.6 0.03 6.6E-07 47.5 3.1 22 183-204 2-23 (199)
405 PRK10908 cell division protein 94.6 0.028 6.1E-07 48.2 3.0 24 182-205 28-51 (222)
406 cd03295 ABC_OpuCA_Osmoprotecti 94.6 0.028 6.1E-07 48.9 3.0 23 182-204 27-49 (242)
407 PHA02530 pseT polynucleotide k 94.6 0.028 6.1E-07 50.5 3.1 22 183-204 3-24 (300)
408 PRK06645 DNA polymerase III su 94.6 0.042 9.2E-07 53.2 4.4 45 159-204 21-65 (507)
409 cd03268 ABC_BcrA_bacitracin_re 94.6 0.029 6.2E-07 47.6 3.0 23 182-204 26-48 (208)
410 TIGR00972 3a0107s01c2 phosphat 94.6 0.027 6E-07 49.1 2.9 23 182-204 27-49 (247)
411 PRK13539 cytochrome c biogenes 94.6 0.029 6.3E-07 47.7 3.0 25 181-205 27-51 (207)
412 TIGR02324 CP_lyasePhnL phospho 94.6 0.029 6.2E-07 48.2 3.0 24 182-205 34-57 (224)
413 cd03266 ABC_NatA_sodium_export 94.6 0.029 6.3E-07 47.9 2.9 23 182-204 31-53 (218)
414 cd04177 RSR1 RSR1 subgroup. R 94.6 0.029 6.3E-07 45.6 2.8 21 185-205 4-24 (168)
415 cd04101 RabL4 RabL4 (Rab-like4 94.6 0.029 6.4E-07 45.1 2.8 21 184-204 2-22 (164)
416 cd03262 ABC_HisP_GlnQ_permease 94.6 0.029 6.2E-07 47.7 2.9 23 182-204 26-48 (213)
417 cd04140 ARHI_like ARHI subfami 94.6 0.03 6.4E-07 45.4 2.9 22 184-205 3-24 (165)
418 PLN02165 adenylate isopentenyl 94.6 0.03 6.5E-07 51.1 3.1 26 180-205 41-66 (334)
419 COG0125 Tmk Thymidylate kinase 94.5 0.085 1.8E-06 45.1 5.7 52 182-235 3-54 (208)
420 cd03221 ABCF_EF-3 ABCF_EF-3 E 94.5 0.031 6.7E-07 44.7 2.9 24 182-205 26-49 (144)
421 PRK13973 thymidylate kinase; P 94.5 0.094 2E-06 44.8 6.1 23 183-205 4-26 (213)
422 COG1125 OpuBA ABC-type proline 94.5 0.27 5.9E-06 43.2 8.8 73 181-260 26-103 (309)
423 PRK14242 phosphate transporter 94.5 0.029 6.4E-07 49.1 3.0 23 182-204 32-54 (253)
424 cd03246 ABCC_Protease_Secretio 94.5 0.031 6.8E-07 46.0 3.0 23 182-204 28-50 (173)
425 cd01869 Rab1_Ypt1 Rab1/Ypt1 su 94.5 0.031 6.7E-07 45.2 2.9 23 183-205 3-25 (166)
426 PRK11247 ssuB aliphatic sulfon 94.5 0.03 6.4E-07 49.5 3.0 23 182-204 38-60 (257)
427 PRK14247 phosphate ABC transpo 94.5 0.029 6.3E-07 49.1 2.9 23 182-204 29-51 (250)
428 PRK14241 phosphate transporter 94.5 0.029 6.3E-07 49.4 2.9 23 182-204 30-52 (258)
429 COG1121 ZnuC ABC-type Mn/Zn tr 94.5 0.029 6.4E-07 49.2 2.9 23 182-204 30-52 (254)
430 cd03233 ABC_PDR_domain1 The pl 94.5 0.029 6.4E-07 47.5 2.8 24 182-205 33-56 (202)
431 cd03214 ABC_Iron-Siderophores_ 94.5 0.031 6.8E-07 46.3 3.0 23 182-204 25-47 (180)
432 PF13245 AAA_19: Part of AAA d 94.5 0.033 7.3E-07 39.5 2.7 23 182-204 10-33 (76)
433 cd04153 Arl5_Arl8 Arl5/Arl8 su 94.5 0.055 1.2E-06 44.4 4.4 34 169-204 4-37 (174)
434 TIGR01351 adk adenylate kinase 94.5 0.027 5.9E-07 48.0 2.7 20 185-204 2-21 (210)
435 PRK09111 DNA polymerase III su 94.5 0.041 8.9E-07 54.4 4.2 45 159-204 24-68 (598)
436 cd01124 KaiC KaiC is a circadi 94.5 0.04 8.8E-07 45.5 3.6 37 185-223 2-38 (187)
437 cd04137 RheB Rheb (Ras Homolog 94.5 0.034 7.3E-07 45.7 3.1 21 184-204 3-23 (180)
438 PRK14245 phosphate ABC transpo 94.5 0.031 6.6E-07 48.9 3.0 22 182-203 29-50 (250)
439 PRK00454 engB GTP-binding prot 94.5 0.034 7.4E-07 46.2 3.1 26 180-205 22-47 (196)
440 cd02032 Bchl_like This family 94.5 0.029 6.3E-07 49.6 2.8 20 183-202 1-20 (267)
441 TIGR02016 BchX chlorophyllide 94.5 0.028 6.1E-07 50.7 2.7 22 183-204 1-22 (296)
442 PRK07994 DNA polymerase III su 94.5 0.045 9.7E-07 54.5 4.3 45 159-204 16-60 (647)
443 PRK09544 znuC high-affinity zi 94.5 0.031 6.8E-07 49.1 3.0 24 182-205 30-53 (251)
444 cd03223 ABCD_peroxisomal_ALDP 94.4 0.033 7.3E-07 45.6 3.0 24 182-205 27-50 (166)
445 PLN02924 thymidylate kinase 94.4 0.084 1.8E-06 45.5 5.5 54 181-235 15-68 (220)
446 PRK09493 glnQ glutamine ABC tr 94.4 0.031 6.8E-07 48.5 2.9 24 182-205 27-50 (240)
447 PRK08939 primosomal protein Dn 94.4 0.12 2.5E-06 46.9 6.7 56 164-221 136-193 (306)
448 PF00154 RecA: recA bacterial 94.4 0.06 1.3E-06 49.0 4.8 47 180-228 51-97 (322)
449 PRK14528 adenylate kinase; Pro 94.4 0.033 7.3E-07 46.6 3.0 22 183-204 2-23 (186)
450 smart00178 SAR Sar1p-like memb 94.4 0.064 1.4E-06 44.5 4.7 24 182-205 17-40 (184)
451 PF08303 tRNA_lig_kinase: tRNA 94.4 0.056 1.2E-06 44.2 4.1 45 185-238 2-51 (168)
452 cd01858 NGP_1 NGP-1. Autoanti 94.4 0.075 1.6E-06 42.9 5.0 25 182-206 102-126 (157)
453 PF02367 UPF0079: Uncharacteri 94.4 0.054 1.2E-06 42.3 3.9 26 181-206 14-39 (123)
454 PRK11300 livG leucine/isoleuci 94.4 0.033 7.1E-07 48.8 3.0 25 181-205 30-54 (255)
455 TIGR01277 thiQ thiamine ABC tr 94.4 0.033 7.1E-07 47.5 3.0 24 182-205 24-47 (213)
456 PF13604 AAA_30: AAA domain; P 94.4 0.061 1.3E-06 45.5 4.5 34 169-204 7-40 (196)
457 cd03252 ABCC_Hemolysin The ABC 94.4 0.032 6.9E-07 48.4 2.9 23 182-204 28-50 (237)
458 cd03230 ABC_DR_subfamily_A Thi 94.4 0.034 7.4E-07 45.8 3.0 24 182-205 26-49 (173)
459 PRK14274 phosphate ABC transpo 94.4 0.031 6.8E-07 49.2 2.9 23 182-204 38-60 (259)
460 PRK14250 phosphate ABC transpo 94.4 0.033 7.1E-07 48.5 3.0 23 182-204 29-51 (241)
461 PRK14088 dnaA chromosomal repl 94.4 0.17 3.8E-06 48.2 8.1 48 182-237 130-179 (440)
462 cd00880 Era_like Era (E. coli 94.4 0.021 4.4E-07 44.9 1.5 19 187-205 1-19 (163)
463 PRK12724 flagellar biosynthesi 94.4 0.035 7.5E-07 52.3 3.2 24 181-204 222-245 (432)
464 cd03278 ABC_SMC_barmotin Barmo 94.4 0.031 6.8E-07 47.3 2.7 20 184-203 24-43 (197)
465 PRK10895 lipopolysaccharide AB 94.4 0.033 7.1E-07 48.4 2.9 24 182-205 29-52 (241)
466 cd03247 ABCC_cytochrome_bd The 94.4 0.034 7.4E-07 46.0 2.9 24 182-205 28-51 (178)
467 PRK11264 putative amino-acid A 94.4 0.033 7.1E-07 48.7 2.9 23 182-204 29-51 (250)
468 PRK10575 iron-hydroxamate tran 94.4 0.032 6.9E-07 49.3 2.9 24 182-205 37-60 (265)
469 PRK14974 cell division protein 94.4 0.037 8E-07 50.8 3.3 24 181-204 139-162 (336)
470 cd01887 IF2_eIF5B IF2/eIF5B (i 94.4 0.033 7.1E-07 44.9 2.7 23 183-205 1-23 (168)
471 cd03267 ABC_NatA_like Similar 94.4 0.034 7.4E-07 48.3 3.0 23 182-204 47-69 (236)
472 cd03216 ABC_Carb_Monos_I This 94.4 0.036 7.9E-07 45.3 3.0 23 182-204 26-48 (163)
473 PRK14239 phosphate transporter 94.3 0.034 7.3E-07 48.7 2.9 23 182-204 31-53 (252)
474 PRK13234 nifH nitrogenase redu 94.3 0.037 8.1E-07 49.8 3.3 22 181-202 3-24 (295)
475 cd03215 ABC_Carb_Monos_II This 94.3 0.035 7.6E-07 46.1 2.9 24 182-205 26-49 (182)
476 PRK14730 coaE dephospho-CoA ki 94.3 0.035 7.5E-07 46.9 2.9 22 183-204 2-23 (195)
477 cd03228 ABCC_MRP_Like The MRP 94.3 0.037 8E-07 45.5 3.0 23 182-204 28-50 (171)
478 cd04162 Arl9_Arfrp2_like Arl9/ 94.3 0.034 7.4E-07 45.2 2.7 21 185-205 2-22 (164)
479 PRK10744 pstB phosphate transp 94.3 0.034 7.4E-07 49.0 2.9 23 182-204 39-61 (260)
480 PRK14267 phosphate ABC transpo 94.3 0.034 7.4E-07 48.7 2.9 23 182-204 30-52 (253)
481 PRK14256 phosphate ABC transpo 94.3 0.035 7.7E-07 48.6 3.0 23 182-204 30-52 (252)
482 PRK13638 cbiO cobalt transport 94.3 0.034 7.4E-07 49.3 2.9 23 182-204 27-49 (271)
483 TIGR03410 urea_trans_UrtE urea 94.3 0.035 7.6E-07 47.8 2.9 24 181-204 25-48 (230)
484 cd03294 ABC_Pro_Gly_Bertaine T 94.3 0.035 7.6E-07 49.2 3.0 23 182-204 50-72 (269)
485 PHA02575 1 deoxynucleoside mon 94.3 0.036 7.7E-07 47.7 2.8 21 184-204 2-22 (227)
486 cd04146 RERG_RasL11_like RERG/ 94.3 0.036 7.8E-07 44.8 2.8 20 185-204 2-21 (165)
487 PRK00279 adk adenylate kinase; 94.3 0.033 7.2E-07 47.6 2.7 21 184-204 2-22 (215)
488 PHA02518 ParA-like protein; Pr 94.3 0.034 7.3E-07 47.0 2.7 20 183-202 1-21 (211)
489 PRK13649 cbiO cobalt transport 94.3 0.035 7.6E-07 49.5 2.9 23 182-204 33-55 (280)
490 KOG1969 DNA replication checkp 94.3 0.14 3E-06 51.0 7.1 56 180-240 324-379 (877)
491 PRK14238 phosphate transporter 94.3 0.036 7.7E-07 49.3 2.9 23 182-204 50-72 (271)
492 PRK11831 putative ABC transpor 94.3 0.035 7.7E-07 49.2 2.9 23 182-204 33-55 (269)
493 PLN00020 ribulose bisphosphate 94.2 0.035 7.7E-07 51.3 2.9 54 180-238 146-204 (413)
494 PRK11022 dppD dipeptide transp 94.2 0.034 7.3E-07 50.9 2.8 23 182-204 33-55 (326)
495 PRK13974 thymidylate kinase; P 94.2 0.11 2.4E-06 44.3 5.9 25 183-207 4-28 (212)
496 PRK11701 phnK phosphonate C-P 94.2 0.037 8E-07 48.7 2.9 24 182-205 32-55 (258)
497 PRK07933 thymidylate kinase; V 94.2 0.081 1.7E-06 45.3 5.0 23 184-206 2-24 (213)
498 cd04114 Rab30 Rab30 subfamily. 94.2 0.044 9.6E-07 44.3 3.2 24 181-204 6-29 (169)
499 TIGR00382 clpX endopeptidase C 94.2 0.062 1.4E-06 50.7 4.6 47 158-204 76-138 (413)
500 TIGR03881 KaiC_arch_4 KaiC dom 94.2 0.09 2E-06 45.2 5.3 47 175-223 13-59 (229)
No 1
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.97 E-value=2e-29 Score=253.19 Aligned_cols=254 Identities=19% Similarity=0.220 Sum_probs=194.9
Q ss_pred CccHHHHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhcCCchHHHHHHHHHHH
Q 047336 1 MDISFRLFSERLRRVLAGEEVMLSDTAKQPIHNLNAEVEIVTSWLREFEDDISCLLFHKIAEEEIDDPDFGTIMDEINCF 80 (290)
Q Consensus 1 ~~~~v~~~l~kL~~~~l~~e~~~~~~v~~~v~~L~~eL~~i~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~Wl~~lr~~ 80 (290)
|++.+++.++|+. .++.+++..+.+.++.+..|+.+|..+++++.|++ +++.....+..|.+.++++
T Consensus 1 ~~~~~s~~~~~~~-~~l~~~~~~~~~~~~~i~~Lk~~L~~l~~~l~d~~------------a~~~~~~~~~~~~e~~~~~ 67 (889)
T KOG4658|consen 1 MGACVSFGVEKLD-QLLNRESECLDGKDNYILELKENLKALQSALEDLD------------AKRDDLERRVNWEEDVGDL 67 (889)
T ss_pred CCeEEEEehhhHH-HHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHH------------hhcchHHHHHHHHHHHHHH
Confidence 7788888999999 99999999999999999999999999999999999 8888889999999999999
Q ss_pred HHHhHhHHHHHHhhhhccc--cc-c-c--cccchh--hhhHhHHHHHHHHHHHHHHHHhhCC-----C-CCCCCCCCccC
Q 047336 81 TYESGKVIDTLINSITQQK--SQ-S-R--YNKDIC--DALQGLQSRITEIKQRVQQLKHTDP-----K-IMDNFRSVEAE 146 (290)
Q Consensus 81 a~d~eD~lD~~~~~~~~~~--g~-~-~--~~~~~~--~~~~~ia~~i~~i~~~l~~i~~~~~-----~-l~~~~~~~~~~ 146 (290)
+|++||+++.+.......+ +. . + ..+..+ .+.+..+..+..+.+++..+.+... + +...+....+
T Consensus 68 ~~~~e~~~~~~~v~~~~~~~~~~l~~~~~~~~~~c~~~~~~~~~~~~~~~~~rv~~~l~~ve~l~~~~~~~~~~~~~~~- 146 (889)
T KOG4658|consen 68 VYLAEDIIWLFLVEEIERKANDLLSTRSVERQRLCLCGFCSKNVSDSYKYGKRVSKVLREVESLGSKGVFEVVGESLDP- 146 (889)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHhhhhHHHHHHHhhhhhHhHhhhhhHhHHHHHHHHHHHHHHhccccceecccccccc-
Confidence 9999999999988765432 22 1 1 111222 4455555555555555554444433 1 1111111111
Q ss_pred CCCCCCCCCCCCCcccccchhHHHHHHHHhcCCCCcEEEEEEcCCCCChhHHHHHHhcccc-ccccCCeeEEEECCCCCC
Q 047336 147 SGYFPASSSSKNRNTVGLDDRMEELLDLLIEGPTQLSVVAILDSIGLDKTAFTAEAYNSSY-VKHYFDYLAWIPAPYQYD 225 (290)
Q Consensus 147 ~~~~~~~~~~~~~~~vG~e~~~~~L~~~L~~~~~~~~Vi~IvGmgGiGKTTLa~~vy~d~~-v~~~F~~~~wV~vs~~~~ 225 (290)
...+...+..++.+ ||.+..+++++++|..++. .++||+||||+||||||+.+||+.. ++.+||.+|||+||++|+
T Consensus 147 ~~~~e~~~~~~~~~-VG~e~~~~kl~~~L~~d~~--~iv~i~GMGGvGKTTL~~qi~N~~~~v~~~Fd~~iWV~VSk~f~ 223 (889)
T KOG4658|consen 147 REKVETRPIQSESD-VGLETMLEKLWNRLMEDDV--GIVGIYGMGGVGKTTLARQIFNKFDEVGNHFDGVIWVVVSKEFT 223 (889)
T ss_pred hhhcccCCCCcccc-ccHHHHHHHHHHHhccCCC--CEEEEECCCcccHHHHHHHHhcccchhcccCceEEEEEEccccc
Confidence 22233444444455 9999999999999998774 9999999999999999999999988 999999999999999999
Q ss_pred HHHHHHHHHHHhhhcCCCchhhHHHHhHHHHhhhccccchhhHHHHHHHHhhc--ceEE--Eeccc
Q 047336 226 PDQILDTVTWLSRRNLSFSRSWIQKENIAALWKISISFQPCILAAVLKIYWAD--YLIF--EISEY 287 (290)
Q Consensus 226 ~~~ll~~Il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~--yLiV--~~~~~ 287 (290)
...++++|++.+..... .|.++ .... ++..|..+|+. |||| |||+-
T Consensus 224 ~~~iq~~Il~~l~~~~~---~~~~~-----------~~~~--~~~~i~~~L~~krfllvLDDIW~~ 273 (889)
T KOG4658|consen 224 TRKIQQTILERLGLLDE---EWEDK-----------EEDE--LASKLLNLLEGKRFLLVLDDIWEE 273 (889)
T ss_pred HHhHHHHHHHHhccCCc---ccchh-----------hHHH--HHHHHHHHhccCceEEEEeccccc
Confidence 99999999999987544 11110 1112 78889999999 9999 99975
No 2
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=99.66 E-value=4.2e-16 Score=139.37 Aligned_cols=107 Identities=21% Similarity=0.300 Sum_probs=87.0
Q ss_pred cchhHHHHHHHHhcCCCCcEEEEEEcCCCCChhHHHHHHhccccccccCCeeEEEECCCCCCHHHHHHHHHHHhhhcCCC
Q 047336 164 LDDRMEELLDLLIEGPTQLSVVAILDSIGLDKTAFTAEAYNSSYVKHYFDYLAWIPAPYQYDPDQILDTVTWLSRRNLSF 243 (290)
Q Consensus 164 ~e~~~~~L~~~L~~~~~~~~Vi~IvGmgGiGKTTLa~~vy~d~~v~~~F~~~~wV~vs~~~~~~~ll~~Il~~l~~~~~~ 243 (290)
||.++++|.++|.....+.++|+|+||||+||||||+.+|++..++.+|+.++||.+++.++...+++.|+.++......
T Consensus 1 re~~~~~l~~~L~~~~~~~~~v~I~G~~G~GKT~LA~~~~~~~~~~~~f~~v~wv~~~~~~~~~~~~~~i~~~l~~~~~~ 80 (287)
T PF00931_consen 1 REKEIEKLKDWLLDNSNEVRVVAIVGMGGIGKTTLARQVARDLRIKNRFDGVIWVSLSKNPSLEQLLEQILRQLGEPDSS 80 (287)
T ss_dssp -HHHHHHHHHHHHTTTTSSEEEEEEESTTSSHHHHHHHHHCHHHHCCCCTEEEEEEEES-SCCHHHHHHHHHHHTCC-ST
T ss_pred CHHHHHHHHHHhhCCCCCeEEEEEEcCCcCCcceeeeecccccccccccccccccccccccccccccccccccccccccc
Confidence 57899999999998667899999999999999999999999777899999999999999999999999999999876430
Q ss_pred chhhHHHHhHHHHhhh-ccccchhhHHHHHHHHhhc--ceEE--Eecc
Q 047336 244 SRSWIQKENIAALWKI-SISFQPCILAAVLKIYWAD--YLIF--EISE 286 (290)
Q Consensus 244 ~~~~~~~~~~~~~~~~-~~~~~~~~l~~~l~~~L~~--yLiV--~~~~ 286 (290)
. ......+ +...|.+.|++ |||| |+|.
T Consensus 81 ---------------~~~~~~~~~-~~~~l~~~L~~~~~LlVlDdv~~ 112 (287)
T PF00931_consen 81 ---------------ISDPKDIEE-LQDQLRELLKDKRCLLVLDDVWD 112 (287)
T ss_dssp ---------------SSCCSSHHH-HHHHHHHHHCCTSEEEEEEEE-S
T ss_pred ---------------ccccccccc-ccccchhhhccccceeeeeeecc
Confidence 1 1111122 77888999988 9998 6664
No 3
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.30 E-value=2.3e-11 Score=127.82 Aligned_cols=60 Identities=22% Similarity=0.388 Sum_probs=53.8
Q ss_pred CCcccccchhHHHHHHHHhcCCCCcEEEEEEcCCCCChhHHHHHHhccccccccCCeeEEEE
Q 047336 158 NRNTVGLDDRMEELLDLLIEGPTQLSVVAILDSIGLDKTAFTAEAYNSSYVKHYFDYLAWIP 219 (290)
Q Consensus 158 ~~~~vG~e~~~~~L~~~L~~~~~~~~Vi~IvGmgGiGKTTLa~~vy~d~~v~~~F~~~~wV~ 219 (290)
..++||++...++|..+|..+..+.++|+||||||+||||||+.+|+ ++..+|+..+|+.
T Consensus 183 ~~~~vG~~~~l~~l~~lL~l~~~~~~vvgI~G~gGiGKTTLA~~l~~--~l~~~F~g~vfv~ 242 (1153)
T PLN03210 183 FEDFVGIEDHIAKMSSLLHLESEEVRMVGIWGSSGIGKTTIARALFS--RLSRQFQSSVFID 242 (1153)
T ss_pred cccccchHHHHHHHHHHHccccCceEEEEEEcCCCCchHHHHHHHHH--HHhhcCCeEEEee
Confidence 45699999999999999976667799999999999999999999999 7788999988774
No 4
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=98.55 E-value=1.2e-07 Score=83.22 Aligned_cols=56 Identities=9% Similarity=-0.130 Sum_probs=47.7
Q ss_pred cEEEEEEcCCCCChhHHHHHHhccccccccCCeeEEEECCCC--CCHHHHHHHHHHHhh
Q 047336 182 LSVVAILDSIGLDKTAFTAEAYNSSYVKHYFDYLAWIPAPYQ--YDPDQILDTVTWLSR 238 (290)
Q Consensus 182 ~~Vi~IvGmgGiGKTTLa~~vy~d~~v~~~F~~~~wV~vs~~--~~~~~ll~~Il~~l~ 238 (290)
-..++|+|++|+|||||++.+|++.... +|+.++|+++++. +++.++++.|...+-
T Consensus 16 Gqr~~I~G~~G~GKTTLlr~I~n~l~~~-~fdv~~~v~vI~er~~ev~el~~~I~~~~v 73 (249)
T cd01128 16 GQRGLIVAPPKAGKTTLLQSIANAITKN-HPEVYLIVLLIDERPEEVTDMQRSVKGEVI 73 (249)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhccccc-cCCeEEEEEEccCCCccHHHHHHHhccEEE
Confidence 4678999999999999999999965544 8999999998876 899999999954443
No 5
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=98.51 E-value=9.1e-08 Score=88.16 Aligned_cols=54 Identities=11% Similarity=-0.101 Sum_probs=46.6
Q ss_pred cEEEEEEcCCCCChhHHHHHHhccccccccCCeeEEEECCCCC--CHHHHHHHHHHH
Q 047336 182 LSVVAILDSIGLDKTAFTAEAYNSSYVKHYFDYLAWIPAPYQY--DPDQILDTVTWL 236 (290)
Q Consensus 182 ~~Vi~IvGmgGiGKTTLa~~vy~d~~v~~~F~~~~wV~vs~~~--~~~~ll~~Il~~ 236 (290)
=.-..|+|++|+||||||+.||++...+ ||++++||++++.+ ++.+++++|+..
T Consensus 169 GQR~lIvgppGvGKTTLaK~Ian~I~~n-hFDv~~~VvLIgER~~EVtdiqrsIlg~ 224 (416)
T PRK09376 169 GQRGLIVAPPKAGKTVLLQNIANSITTN-HPEVHLIVLLIDERPEEVTDMQRSVKGE 224 (416)
T ss_pred CceEEEeCCCCCChhHHHHHHHHHHHhh-cCCeEEEEEEeCCchhHHHHHHHHhcCc
Confidence 3567899999999999999999965444 89999999999998 888999998743
No 6
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=98.48 E-value=1.8e-06 Score=80.85 Aligned_cols=83 Identities=14% Similarity=0.044 Sum_probs=62.2
Q ss_pred CCCcccccchhHHHHHHHHhcC--CCCcEEEEEEcCCCCChhHHHHHHhccccccccCCeeEEEECCCCCCHHHHHHHHH
Q 047336 157 KNRNTVGLDDRMEELLDLLIEG--PTQLSVVAILDSIGLDKTAFTAEAYNSSYVKHYFDYLAWIPAPYQYDPDQILDTVT 234 (290)
Q Consensus 157 ~~~~~vG~e~~~~~L~~~L~~~--~~~~~Vi~IvGmgGiGKTTLa~~vy~d~~v~~~F~~~~wV~vs~~~~~~~ll~~Il 234 (290)
.++.++||+++.++|...|... ......+-|+|++|+||||+++.++++.......-..++|......+...++..|+
T Consensus 28 ~P~~l~~Re~e~~~l~~~l~~~~~~~~~~~~lI~G~~GtGKT~l~~~v~~~l~~~~~~~~~v~in~~~~~~~~~~~~~i~ 107 (394)
T PRK00411 28 VPENLPHREEQIEELAFALRPALRGSRPLNVLIYGPPGTGKTTTVKKVFEELEEIAVKVVYVYINCQIDRTRYAIFSEIA 107 (394)
T ss_pred cCCCCCCHHHHHHHHHHHHHHHhCCCCCCeEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEECCcCCCHHHHHHHHH
Confidence 4467999999999999998542 23345567999999999999999998432222123456666666667889999999
Q ss_pred HHhhh
Q 047336 235 WLSRR 239 (290)
Q Consensus 235 ~~l~~ 239 (290)
+++..
T Consensus 108 ~~l~~ 112 (394)
T PRK00411 108 RQLFG 112 (394)
T ss_pred HHhcC
Confidence 99875
No 7
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=98.33 E-value=5.7e-06 Score=76.55 Aligned_cols=81 Identities=21% Similarity=0.092 Sum_probs=60.8
Q ss_pred CCcccccchhHHHHHHHHhc--CCCCcEEEEEEcCCCCChhHHHHHHhcccccc-ccC---CeeEEEECCCCCCHHHHHH
Q 047336 158 NRNTVGLDDRMEELLDLLIE--GPTQLSVVAILDSIGLDKTAFTAEAYNSSYVK-HYF---DYLAWIPAPYQYDPDQILD 231 (290)
Q Consensus 158 ~~~~vG~e~~~~~L~~~L~~--~~~~~~Vi~IvGmgGiGKTTLa~~vy~d~~v~-~~F---~~~~wV~vs~~~~~~~ll~ 231 (290)
+..++||+.+.++|..+|.. .......+-|+|++|+||||+++.++++..-. ... -..+||......+...++.
T Consensus 14 p~~l~gRe~e~~~l~~~l~~~~~~~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in~~~~~~~~~~~~ 93 (365)
T TIGR02928 14 PDRIVHRDEQIEELAKALRPILRGSRPSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVNCQILDTLYQVLV 93 (365)
T ss_pred CCCCCCcHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEECCCCCCHHHHHH
Confidence 34799999999999999875 22334568899999999999999999842110 111 1356777776667788999
Q ss_pred HHHHHhh
Q 047336 232 TVTWLSR 238 (290)
Q Consensus 232 ~Il~~l~ 238 (290)
.|++++.
T Consensus 94 ~i~~~l~ 100 (365)
T TIGR02928 94 ELANQLR 100 (365)
T ss_pred HHHHHHh
Confidence 9999985
No 8
>PTZ00202 tuzin; Provisional
Probab=98.20 E-value=1.9e-05 Score=73.77 Aligned_cols=77 Identities=13% Similarity=0.025 Sum_probs=59.9
Q ss_pred CCCCcccccchhHHHHHHHHhcC-CCCcEEEEEEcCCCCChhHHHHHHhccccccccCCeeEEEECCCCCCHHHHHHHHH
Q 047336 156 SKNRNTVGLDDRMEELLDLLIEG-PTQLSVVAILDSIGLDKTAFTAEAYNSSYVKHYFDYLAWIPAPYQYDPDQILDTVT 234 (290)
Q Consensus 156 ~~~~~~vG~e~~~~~L~~~L~~~-~~~~~Vi~IvGmgGiGKTTLa~~vy~d~~v~~~F~~~~wV~vs~~~~~~~ll~~Il 234 (290)
.+...++||+.+...|...|... ....+++.|.|++|+|||||++.+.... . ..+++.-+. +..++++.|+
T Consensus 259 a~~~~FVGReaEla~Lr~VL~~~d~~~privvLtG~~G~GKTTLlR~~~~~l--~----~~qL~vNpr--g~eElLr~LL 330 (550)
T PTZ00202 259 AVIRQFVSREAEESWVRQVLRRLDTAHPRIVVFTGFRGCGKSSLCRSAVRKE--G----MPAVFVDVR--GTEDTLRSVV 330 (550)
T ss_pred CCccCCCCcHHHHHHHHHHHhccCCCCceEEEEECCCCCCHHHHHHHHHhcC--C----ceEEEECCC--CHHHHHHHHH
Confidence 45567999999999999988753 2335699999999999999999999732 2 224444444 6799999999
Q ss_pred HHhhhc
Q 047336 235 WLSRRN 240 (290)
Q Consensus 235 ~~l~~~ 240 (290)
.+|+-.
T Consensus 331 ~ALGV~ 336 (550)
T PTZ00202 331 KALGVP 336 (550)
T ss_pred HHcCCC
Confidence 999863
No 9
>PRK08118 topology modulation protein; Reviewed
Probab=98.18 E-value=7.6e-07 Score=73.54 Aligned_cols=51 Identities=16% Similarity=0.288 Sum_probs=36.4
Q ss_pred EEEEEEcCCCCChhHHHHHHhcccccc-ccCCeeE----EEECCCCCCHHHHHHHHH
Q 047336 183 SVVAILDSIGLDKTAFTAEAYNSSYVK-HYFDYLA----WIPAPYQYDPDQILDTVT 234 (290)
Q Consensus 183 ~Vi~IvGmgGiGKTTLa~~vy~d~~v~-~~F~~~~----wV~vs~~~~~~~ll~~Il 234 (290)
+.|.|+|++|+||||||+.+++...+. -+||... |..+++. ....++++++
T Consensus 2 ~rI~I~G~~GsGKSTlak~L~~~l~~~~~~lD~l~~~~~w~~~~~~-~~~~~~~~~~ 57 (167)
T PRK08118 2 KKIILIGSGGSGKSTLARQLGEKLNIPVHHLDALFWKPNWEGVPKE-EQITVQNELV 57 (167)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCceecchhhcccCCcCCCHH-HHHHHHHHHh
Confidence 358899999999999999999966554 4688777 5555543 3334444444
No 10
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=98.16 E-value=2.9e-06 Score=70.35 Aligned_cols=46 Identities=22% Similarity=0.263 Sum_probs=32.1
Q ss_pred cccccchhHHHHHHHHh-cCCCCcEEEEEEcCCCCChhHHHHHHhcc
Q 047336 160 NTVGLDDRMEELLDLLI-EGPTQLSVVAILDSIGLDKTAFTAEAYNS 205 (290)
Q Consensus 160 ~~vG~e~~~~~L~~~L~-~~~~~~~Vi~IvGmgGiGKTTLa~~vy~d 205 (290)
.++||+++.++|...|. ..+...+.+-|+|.+|+|||||.+.++..
T Consensus 1 ~fvgR~~e~~~l~~~l~~~~~~~~~~~ll~G~~G~GKT~ll~~~~~~ 47 (185)
T PF13191_consen 1 QFVGREEEIERLRDLLDAAQSGSPRNLLLTGESGSGKTSLLRALLDR 47 (185)
T ss_dssp --TT-HHHHHHHHHTTGGTSS-----EEE-B-TTSSHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHcCCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 37999999999999994 23455789999999999999999999984
No 11
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=98.14 E-value=3e-06 Score=78.55 Aligned_cols=57 Identities=7% Similarity=-0.159 Sum_probs=47.9
Q ss_pred cEEEEEEcCCCCChhHHHHHHhccccccccCCeeEEEECCCC--CCHHHHHHHHHHHhhh
Q 047336 182 LSVVAILDSIGLDKTAFTAEAYNSSYVKHYFDYLAWIPAPYQ--YDPDQILDTVTWLSRR 239 (290)
Q Consensus 182 ~~Vi~IvGmgGiGKTTLa~~vy~d~~v~~~F~~~~wV~vs~~--~~~~~ll~~Il~~l~~ 239 (290)
=..++|+|++|+|||||++.+++.... +||+.++||.+++. +++.++++.|+..+-.
T Consensus 168 Gq~~~IvG~~g~GKTtL~~~i~~~I~~-nhfdv~v~VlLIgER~~EVtDLqrsIlg~Vva 226 (415)
T TIGR00767 168 GQRGLIVAPPKAGKTVLLQKIAQAITR-NHPEVELIVLLIDERPEEVTDMQRSVKGEVVA 226 (415)
T ss_pred CCEEEEECCCCCChhHHHHHHHHhhcc-cCCceEEEEEEcCCCCccHHHHHHHhhceEEE
Confidence 467899999999999999999995433 37999999999966 7999999999765543
No 12
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=98.14 E-value=3.4e-06 Score=66.04 Aligned_cols=59 Identities=12% Similarity=0.109 Sum_probs=44.3
Q ss_pred cEEEEEEcCCCCChhHHHHHHhcccccccc-----CCeeEEEECCCCCCHHHHHHHHHHHhhhcCC
Q 047336 182 LSVVAILDSIGLDKTAFTAEAYNSSYVKHY-----FDYLAWIPAPYQYDPDQILDTVTWLSRRNLS 242 (290)
Q Consensus 182 ~~Vi~IvGmgGiGKTTLa~~vy~d~~v~~~-----F~~~~wV~vs~~~~~~~ll~~Il~~l~~~~~ 242 (290)
-+.+.|+|.+|+||||+++.+.++. ... -...+|+.++...+...+.+.|+.++.....
T Consensus 4 ~~~~~i~G~~G~GKT~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~ 67 (131)
T PF13401_consen 4 QRILVISGPPGSGKTTLIKRLARQL--NAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLK 67 (131)
T ss_dssp ---EEEEE-TTSSHHHHHHHHHHHH--HHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSS
T ss_pred CcccEEEcCCCCCHHHHHHHHHHHh--HHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCcccc
Confidence 5678899999999999999998832 221 2346799998888999999999999987655
No 13
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=97.99 E-value=2.1e-05 Score=74.12 Aligned_cols=69 Identities=10% Similarity=0.061 Sum_probs=56.5
Q ss_pred CcccccchhHHHHHHHHhcCCCCcEEEEEEcCCCCChhHHHHHHhccccccccCCeeEEEECCCCCCHHHHHH
Q 047336 159 RNTVGLDDRMEELLDLLIEGPTQLSVVAILDSIGLDKTAFTAEAYNSSYVKHYFDYLAWIPAPYQYDPDQILD 231 (290)
Q Consensus 159 ~~~vG~e~~~~~L~~~L~~~~~~~~Vi~IvGmgGiGKTTLa~~vy~d~~v~~~F~~~~wV~vs~~~~~~~ll~ 231 (290)
.++++.+...+.+...|... ..|.+.|++|+||||+|+.+.+......+|+.+.||+++++++..+++.
T Consensus 175 ~d~~i~e~~le~l~~~L~~~----~~iil~GppGtGKT~lA~~la~~l~~~~~~~~v~~VtFHpsySYeDFI~ 243 (459)
T PRK11331 175 NDLFIPETTIETILKRLTIK----KNIILQGPPGVGKTFVARRLAYLLTGEKAPQRVNMVQFHQSYSYEDFIQ 243 (459)
T ss_pred hcccCCHHHHHHHHHHHhcC----CCEEEECCCCCCHHHHHHHHHHHhcCCcccceeeEEeecccccHHHHhc
Confidence 45788899999999988853 3567799999999999999988554455788999999999988776654
No 14
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=97.76 E-value=7.6e-05 Score=58.50 Aligned_cols=60 Identities=17% Similarity=0.148 Sum_probs=42.4
Q ss_pred cccchhHHHHHHHHhcCCCCcEEEEEEcCCCCChhHHHHHHhccccccccCCeeEEEECCCCCC
Q 047336 162 VGLDDRMEELLDLLIEGPTQLSVVAILDSIGLDKTAFTAEAYNSSYVKHYFDYLAWIPAPYQYD 225 (290)
Q Consensus 162 vG~e~~~~~L~~~L~~~~~~~~Vi~IvGmgGiGKTTLa~~vy~d~~v~~~F~~~~wV~vs~~~~ 225 (290)
+|++.....+...+... ....+-|+|.+|+|||||++.+++. ....-...+++..+....
T Consensus 1 ~~~~~~~~~i~~~~~~~--~~~~v~i~G~~G~GKT~l~~~i~~~--~~~~~~~v~~~~~~~~~~ 60 (151)
T cd00009 1 VGQEEAIEALREALELP--PPKNLLLYGPPGTGKTTLARAIANE--LFRPGAPFLYLNASDLLE 60 (151)
T ss_pred CchHHHHHHHHHHHhCC--CCCeEEEECCCCCCHHHHHHHHHHH--hhcCCCCeEEEehhhhhh
Confidence 36677788888877653 3567889999999999999999984 322223456666655443
No 15
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=97.76 E-value=0.00035 Score=61.74 Aligned_cols=70 Identities=14% Similarity=0.095 Sum_probs=45.1
Q ss_pred hHHHHHHHHhcC-CCCcEEEEEEcCCCCChhHHHHHHhccccccccCCeeEEEECCCCCCHHHHHHHHHHHhhh
Q 047336 167 RMEELLDLLIEG-PTQLSVVAILDSIGLDKTAFTAEAYNSSYVKHYFDYLAWIPAPYQYDPDQILDTVTWLSRR 239 (290)
Q Consensus 167 ~~~~L~~~L~~~-~~~~~Vi~IvGmgGiGKTTLa~~vy~d~~v~~~F~~~~wV~vs~~~~~~~ll~~Il~~l~~ 239 (290)
...+..+.+... .....++.|+|++|+|||||++.+++..... .+ ..+|+. +...+..++++.|...+..
T Consensus 27 ~~~~~~~~l~~~~~~~~~~~~l~G~~G~GKTtl~~~l~~~l~~~-~~-~~~~~~-~~~~~~~~~l~~i~~~lG~ 97 (269)
T TIGR03015 27 GHKRAMAYLEYGLSQREGFILITGEVGAGKTTLIRNLLKRLDQE-RV-VAAKLV-NTRVDAEDLLRMVAADFGL 97 (269)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEEcCCCCCHHHHHHHHHHhcCCC-Ce-EEeeee-CCCCCHHHHHHHHHHHcCC
Confidence 334455544432 2235578899999999999999999854321 11 233443 3356778888888877754
No 16
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=97.69 E-value=3.2e-05 Score=66.22 Aligned_cols=43 Identities=28% Similarity=0.412 Sum_probs=35.6
Q ss_pred ccccchhHHHHHHHHhcCCCCcEEEEEEcCCCCChhHHHHHHhcc
Q 047336 161 TVGLDDRMEELLDLLIEGPTQLSVVAILDSIGLDKTAFTAEAYNS 205 (290)
Q Consensus 161 ~vG~e~~~~~L~~~L~~~~~~~~Vi~IvGmgGiGKTTLa~~vy~d 205 (290)
++||+.+.++|.+++..+. ...+.|+|+.|+|||+|++.+.+.
T Consensus 1 F~gR~~el~~l~~~l~~~~--~~~~~l~G~rg~GKTsLl~~~~~~ 43 (234)
T PF01637_consen 1 FFGREKELEKLKELLESGP--SQHILLYGPRGSGKTSLLKEFINE 43 (234)
T ss_dssp S-S-HHHHHHHHHCHHH----SSEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhhc--CcEEEEEcCCcCCHHHHHHHHHHH
Confidence 5899999999999998654 678889999999999999999983
No 17
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=97.64 E-value=5.6e-05 Score=64.82 Aligned_cols=52 Identities=19% Similarity=0.170 Sum_probs=35.9
Q ss_pred CcccccchhHHHHHHHHhc---CCCCcEEEEEEcCCCCChhHHHHHHhccccccccC
Q 047336 159 RNTVGLDDRMEELLDLLIE---GPTQLSVVAILDSIGLDKTAFTAEAYNSSYVKHYF 212 (290)
Q Consensus 159 ~~~vG~e~~~~~L~~~L~~---~~~~~~Vi~IvGmgGiGKTTLa~~vy~d~~v~~~F 212 (290)
.++||.++-++.+.-++.. ....+.-+-.||++|+||||||+.+-+ .....|
T Consensus 24 ~efiGQ~~l~~~l~i~i~aa~~r~~~l~h~lf~GPPG~GKTTLA~IIA~--e~~~~~ 78 (233)
T PF05496_consen 24 DEFIGQEHLKGNLKILIRAAKKRGEALDHMLFYGPPGLGKTTLARIIAN--ELGVNF 78 (233)
T ss_dssp CCS-S-HHHHHHHHHHHHHHHCTTS---EEEEESSTTSSHHHHHHHHHH--HCT--E
T ss_pred HHccCcHHHHhhhHHHHHHHHhcCCCcceEEEECCCccchhHHHHHHHh--ccCCCe
Confidence 5789999988887666543 245688888999999999999999998 444445
No 18
>PF12061 DUF3542: Protein of unknown function (DUF3542); InterPro: IPR021929 R1 is a gene for resistance to late blight, the most destructive disease in potato cultivation worldwide. The R1 gene belongs to the class of plant genes for pathogen resistance that have a leucine zipper motif, a putative nucleotide binding domain and a leucine-rich repeat domain []. Most proteins matching this entry are found associated with PF00931 from PFAM.
Probab=97.62 E-value=0.00017 Score=64.03 Aligned_cols=105 Identities=19% Similarity=0.163 Sum_probs=82.5
Q ss_pred cHHHHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhcCCchHHHHHHHHHHHHH
Q 047336 3 ISFRLFSERLRRVLAGEEVMLSDTAKQPIHNLNAEVEIVTSWLREFEDDISCLLFHKIAEEEIDDPDFGTIMDEINCFTY 82 (290)
Q Consensus 3 ~~v~~~l~kL~~~~l~~e~~~~~~v~~~v~~L~~eL~~i~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~Wl~~lr~~a~ 82 (290)
+.|.+++.+|- .+.......+.-++++++-++.+|+++|.||+.... ...........+..++-..||
T Consensus 296 GyVdFlL~NLk-dfq~rysdSlaflKnQiqvIQ~elesLqpFLk~V~e-----------e~~nkh~~~ed~a~~ii~kAy 363 (402)
T PF12061_consen 296 GYVDFLLKNLK-DFQGRYSDSLAFLKNQIQVIQTELESLQPFLKHVVE-----------EPHNKHDTNEDCATQIIRKAY 363 (402)
T ss_pred cHHHHHHhhHH-HHhccccchHHHHHHHHHHHHHHHHHhhHHHHHHHh-----------ccchhhhhhhhHHHHHHHHHh
Confidence 46889999999 998888888889999999999999999999999861 222223348899999999999
Q ss_pred HhHhHHHHHHhhhhccccccccccchh-hhhHhHHHHHHHHHHHHH
Q 047336 83 ESGKVIDTLINSITQQKSQSRYNKDIC-DALQGLQSRITEIKQRVQ 127 (290)
Q Consensus 83 d~eD~lD~~~~~~~~~~g~~~~~~~~~-~~~~~ia~~i~~i~~~l~ 127 (290)
++|.++|.+.... ...++. .+...+..+|+-++++++
T Consensus 364 evEYVVDaCi~k~--------~P~Wcl~~WL~dIieei~~ik~~i~ 401 (402)
T PF12061_consen 364 EVEYVVDACISKS--------VPHWCLERWLLDIIEEITCIKAKIQ 401 (402)
T ss_pred heeeeeehhhcCC--------CcHHHHHHHHHHHHHHHHHHHHHhc
Confidence 9999999985322 112222 566788888888887764
No 19
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=97.59 E-value=0.00045 Score=64.12 Aligned_cols=78 Identities=15% Similarity=0.121 Sum_probs=60.4
Q ss_pred CcccccchhHHHHHHHHhc--CCCCcEEEEEEcCCCCChhHHHHHHhccccccccCCe--eEEEECCCCCCHHHHHHHHH
Q 047336 159 RNTVGLDDRMEELLDLLIE--GPTQLSVVAILDSIGLDKTAFTAEAYNSSYVKHYFDY--LAWIPAPYQYDPDQILDTVT 234 (290)
Q Consensus 159 ~~~vG~e~~~~~L~~~L~~--~~~~~~Vi~IvGmgGiGKTTLa~~vy~d~~v~~~F~~--~~wV~vs~~~~~~~ll~~Il 234 (290)
..+.+|+++.+++...|.. .+....-+-|.|..|.|||+.++.|.+ +++..... .+.|..-...+...++..|+
T Consensus 17 ~~l~~Re~ei~~l~~~l~~~~~~~~p~n~~iyG~~GTGKT~~~~~v~~--~l~~~~~~~~~~yINc~~~~t~~~i~~~i~ 94 (366)
T COG1474 17 EELPHREEEINQLASFLAPALRGERPSNIIIYGPTGTGKTATVKFVME--ELEESSANVEVVYINCLELRTPYQVLSKIL 94 (366)
T ss_pred ccccccHHHHHHHHHHHHHHhcCCCCccEEEECCCCCCHhHHHHHHHH--HHHhhhccCceEEEeeeeCCCHHHHHHHHH
Confidence 3499999999999998864 122222388999999999999999999 44443221 57777777788899999999
Q ss_pred HHhh
Q 047336 235 WLSR 238 (290)
Q Consensus 235 ~~l~ 238 (290)
+++.
T Consensus 95 ~~~~ 98 (366)
T COG1474 95 NKLG 98 (366)
T ss_pred HHcC
Confidence 9887
No 20
>PRK07261 topology modulation protein; Provisional
Probab=97.56 E-value=0.00016 Score=59.86 Aligned_cols=52 Identities=17% Similarity=0.228 Sum_probs=33.2
Q ss_pred EEEEEcCCCCChhHHHHHHhcccccc-ccCCeeEEEECCCCCCHHHHHHHHHH
Q 047336 184 VVAILDSIGLDKTAFTAEAYNSSYVK-HYFDYLAWIPAPYQYDPDQILDTVTW 235 (290)
Q Consensus 184 Vi~IvGmgGiGKTTLa~~vy~d~~v~-~~F~~~~wV~vs~~~~~~~ll~~Il~ 235 (290)
.|.|+|++|+||||||+.+.....+. -+.|...|-.-....+..++...+..
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~~~~~~i~~D~~~~~~~~~~~~~~~~~~~~~~ 54 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQHYNCPVLHLDTLHFQPNWQERDDDDMIADISN 54 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHhCCCeEecCCEEeccccccCCHHHHHHHHHH
Confidence 48899999999999999987643322 24666666443333344444444433
No 21
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=97.54 E-value=0.0005 Score=62.92 Aligned_cols=76 Identities=17% Similarity=0.208 Sum_probs=63.9
Q ss_pred CCcccccchhHHHHHHHHhcCCCCc-EEEEEEcCCCCChhHHHHHHhccccccccCCeeEEEECCCCCCHHHHHHHHHHH
Q 047336 158 NRNTVGLDDRMEELLDLLIEGPTQL-SVVAILDSIGLDKTAFTAEAYNSSYVKHYFDYLAWIPAPYQYDPDQILDTVTWL 236 (290)
Q Consensus 158 ~~~~vG~e~~~~~L~~~L~~~~~~~-~Vi~IvGmgGiGKTTLa~~vy~d~~v~~~F~~~~wV~vs~~~~~~~ll~~Il~~ 236 (290)
++.+.+|+.....|..++...+..+ +.+-|.|-.|.|||.+.+.+++.. .. ..+|+++-.-|+.+.++..|+.+
T Consensus 5 ~~~v~~Re~qi~~L~~Llg~~~~~~PS~~~iyG~sgTGKT~~~r~~l~~~--n~---~~vw~n~~ecft~~~lle~IL~~ 79 (438)
T KOG2543|consen 5 EPNVPCRESQIRRLKSLLGNNSCTIPSIVHIYGHSGTGKTYLVRQLLRKL--NL---ENVWLNCVECFTYAILLEKILNK 79 (438)
T ss_pred ccCccchHHHHHHHHHHhCCCCcccceeEEEeccCCCchhHHHHHHHhhc--CC---cceeeehHHhccHHHHHHHHHHH
Confidence 5678899999999999888766544 444889999999999999999944 22 36899999999999999999999
Q ss_pred hh
Q 047336 237 SR 238 (290)
Q Consensus 237 l~ 238 (290)
..
T Consensus 80 ~~ 81 (438)
T KOG2543|consen 80 SQ 81 (438)
T ss_pred hc
Confidence 85
No 22
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=97.44 E-value=9.9e-05 Score=56.99 Aligned_cols=21 Identities=24% Similarity=0.298 Sum_probs=19.9
Q ss_pred EEEEEcCCCCChhHHHHHHhc
Q 047336 184 VVAILDSIGLDKTAFTAEAYN 204 (290)
Q Consensus 184 Vi~IvGmgGiGKTTLa~~vy~ 204 (290)
||.|.|++|+||||+|+.+-+
T Consensus 1 vI~I~G~~gsGKST~a~~La~ 21 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAE 21 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999987
No 23
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=97.42 E-value=0.00018 Score=65.99 Aligned_cols=46 Identities=11% Similarity=0.320 Sum_probs=40.4
Q ss_pred cccccchhHHHHHHHHhcC----CCCcEEEEEEcCCCCChhHHHHHHhcc
Q 047336 160 NTVGLDDRMEELLDLLIEG----PTQLSVVAILDSIGLDKTAFTAEAYNS 205 (290)
Q Consensus 160 ~~vG~e~~~~~L~~~L~~~----~~~~~Vi~IvGmgGiGKTTLa~~vy~d 205 (290)
+++|.++.++++++++... +...+++.++|++|+||||||+.+.+.
T Consensus 52 ~~~G~~~~i~~lv~~l~~~a~g~~~~r~il~L~GPPGsGKStla~~La~~ 101 (361)
T smart00763 52 DFFGMEEAIERFVNYFKSAAQGLEERKQILYLLGPVGGGKSSLVECLKRG 101 (361)
T ss_pred hccCcHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 7999999999999999752 345789999999999999999999873
No 24
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=97.34 E-value=0.00035 Score=63.64 Aligned_cols=72 Identities=11% Similarity=0.146 Sum_probs=44.6
Q ss_pred CCcccccchhHHHHHHHHhcCCCCcEEEEEEcCCCCChhHHHHHHhccccccccCCeeEEEECCCCCCHHHHHHHHHHHh
Q 047336 158 NRNTVGLDDRMEELLDLLIEGPTQLSVVAILDSIGLDKTAFTAEAYNSSYVKHYFDYLAWIPAPYQYDPDQILDTVTWLS 237 (290)
Q Consensus 158 ~~~~vG~e~~~~~L~~~L~~~~~~~~Vi~IvGmgGiGKTTLa~~vy~d~~v~~~F~~~~wV~vs~~~~~~~ll~~Il~~l 237 (290)
.+.++|.+.-...++ .. ..++.+-.||++|+||||||+.+-+..+-.. .-+|.+|..-.-..=.++|+++.
T Consensus 143 Q~hlv~q~gllrs~i---eq--~~ipSmIlWGppG~GKTtlArlia~tsk~~S----yrfvelSAt~a~t~dvR~ife~a 213 (554)
T KOG2028|consen 143 QSHLVGQDGLLRSLI---EQ--NRIPSMILWGPPGTGKTTLARLIASTSKKHS----YRFVELSATNAKTNDVRDIFEQA 213 (554)
T ss_pred hhhhcCcchHHHHHH---Hc--CCCCceEEecCCCCchHHHHHHHHhhcCCCc----eEEEEEeccccchHHHHHHHHHH
Confidence 344555544333333 22 3488888999999999999999998443322 44666665544444455555554
Q ss_pred h
Q 047336 238 R 238 (290)
Q Consensus 238 ~ 238 (290)
.
T Consensus 214 q 214 (554)
T KOG2028|consen 214 Q 214 (554)
T ss_pred H
Confidence 4
No 25
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=97.33 E-value=0.00019 Score=64.84 Aligned_cols=47 Identities=19% Similarity=0.234 Sum_probs=38.7
Q ss_pred CcccccchhHHHHHHHHhcC---CCCcEEEEEEcCCCCChhHHHHHHhcc
Q 047336 159 RNTVGLDDRMEELLDLLIEG---PTQLSVVAILDSIGLDKTAFTAEAYNS 205 (290)
Q Consensus 159 ~~~vG~e~~~~~L~~~L~~~---~~~~~Vi~IvGmgGiGKTTLa~~vy~d 205 (290)
.+++|+++.++.|..++... ......+-++|++|+||||||+.+.+.
T Consensus 4 ~~~iG~~~~~~~l~~~l~~~~~~~~~~~~~ll~Gp~G~GKT~la~~ia~~ 53 (305)
T TIGR00635 4 AEFIGQEKVKEQLQLFIEAAKMRQEALDHLLLYGPPGLGKTTLAHIIANE 53 (305)
T ss_pred HHHcCHHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHH
Confidence 36899999999999988641 234556779999999999999999883
No 26
>PRK13342 recombination factor protein RarA; Reviewed
Probab=97.30 E-value=0.00039 Score=65.67 Aligned_cols=44 Identities=20% Similarity=0.274 Sum_probs=33.9
Q ss_pred CcccccchhHHH---HHHHHhcCCCCcEEEEEEcCCCCChhHHHHHHhc
Q 047336 159 RNTVGLDDRMEE---LLDLLIEGPTQLSVVAILDSIGLDKTAFTAEAYN 204 (290)
Q Consensus 159 ~~~vG~e~~~~~---L~~~L~~~~~~~~Vi~IvGmgGiGKTTLa~~vy~ 204 (290)
+++||.+..... |.+++..+. ...+-++|++|+||||||+.+.+
T Consensus 12 ~d~vGq~~~v~~~~~L~~~i~~~~--~~~ilL~GppGtGKTtLA~~ia~ 58 (413)
T PRK13342 12 DEVVGQEHLLGPGKPLRRMIEAGR--LSSMILWGPPGTGKTTLARIIAG 58 (413)
T ss_pred HHhcCcHHHhCcchHHHHHHHcCC--CceEEEECCCCCCHHHHHHHHHH
Confidence 357887766555 666665443 55677899999999999999988
No 27
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=97.28 E-value=0.00033 Score=64.05 Aligned_cols=47 Identities=21% Similarity=0.222 Sum_probs=39.0
Q ss_pred CcccccchhHHHHHHHHhc---CCCCcEEEEEEcCCCCChhHHHHHHhcc
Q 047336 159 RNTVGLDDRMEELLDLLIE---GPTQLSVVAILDSIGLDKTAFTAEAYNS 205 (290)
Q Consensus 159 ~~~vG~e~~~~~L~~~L~~---~~~~~~Vi~IvGmgGiGKTTLa~~vy~d 205 (290)
.+++|++..++.+..++.. .......+-++|++|+||||||+.+.+.
T Consensus 25 ~~~vG~~~~~~~l~~~l~~~~~~~~~~~~~ll~GppG~GKT~la~~ia~~ 74 (328)
T PRK00080 25 DEFIGQEKVKENLKIFIEAAKKRGEALDHVLLYGPPGLGKTTLANIIANE 74 (328)
T ss_pred HHhcCcHHHHHHHHHHHHHHHhcCCCCCcEEEECCCCccHHHHHHHHHHH
Confidence 5699999999999888864 2334567789999999999999999884
No 28
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=97.26 E-value=0.0021 Score=65.01 Aligned_cols=83 Identities=11% Similarity=0.005 Sum_probs=59.2
Q ss_pred CCcccccchhHHHHHHHHhc---CCCCcEEEEEEcCCCCChhHHHHHHhccccc---cccCC--eeEEEECCCCCCHHHH
Q 047336 158 NRNTVGLDDRMEELLDLLIE---GPTQLSVVAILDSIGLDKTAFTAEAYNSSYV---KHYFD--YLAWIPAPYQYDPDQI 229 (290)
Q Consensus 158 ~~~~vG~e~~~~~L~~~L~~---~~~~~~Vi~IvGmgGiGKTTLa~~vy~d~~v---~~~F~--~~~wV~vs~~~~~~~l 229 (290)
++.++|||++.++|...|.. +...-.++-|.|++|.|||+.++.|.+...- ...+. ..++|....-.+...+
T Consensus 754 PD~LPhREeEIeeLasfL~paIkgsgpnnvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYINCm~Lstp~sI 833 (1164)
T PTZ00112 754 PKYLPCREKEIKEVHGFLESGIKQSGSNQILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEINGMNVVHPNAA 833 (1164)
T ss_pred CCcCCChHHHHHHHHHHHHHHHhcCCCCceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEeCCccCCHHHH
Confidence 35689999999999999875 3333467789999999999999999873211 11222 1455655555567788
Q ss_pred HHHHHHHhhhc
Q 047336 230 LDTVTWLSRRN 240 (290)
Q Consensus 230 l~~Il~~l~~~ 240 (290)
...|.++|...
T Consensus 834 YqvI~qqL~g~ 844 (1164)
T PTZ00112 834 YQVLYKQLFNK 844 (1164)
T ss_pred HHHHHHHHcCC
Confidence 88888888543
No 29
>PRK06696 uridine kinase; Validated
Probab=97.25 E-value=0.00042 Score=59.86 Aligned_cols=41 Identities=24% Similarity=0.212 Sum_probs=33.9
Q ss_pred cchhHHHHHHHHhc-CCCCcEEEEEEcCCCCChhHHHHHHhc
Q 047336 164 LDDRMEELLDLLIE-GPTQLSVVAILDSIGLDKTAFTAEAYN 204 (290)
Q Consensus 164 ~e~~~~~L~~~L~~-~~~~~~Vi~IvGmgGiGKTTLa~~vy~ 204 (290)
+..-.++|.+.+.. ......+|+|.|.+|+||||||+.+.+
T Consensus 3 ~~~~~~~la~~~~~~~~~~~~iI~I~G~sgsGKSTlA~~L~~ 44 (223)
T PRK06696 3 RKQLIKELAEHILTLNLTRPLRVAIDGITASGKTTFADELAE 44 (223)
T ss_pred HHHHHHHHHHHHHHhCCCCceEEEEECCCCCCHHHHHHHHHH
Confidence 45567788888875 345689999999999999999999987
No 30
>PRK07667 uridine kinase; Provisional
Probab=97.17 E-value=0.00057 Score=57.68 Aligned_cols=37 Identities=19% Similarity=0.218 Sum_probs=31.3
Q ss_pred HHHHHHHHhcCCCCcEEEEEEcCCCCChhHHHHHHhc
Q 047336 168 MEELLDLLIEGPTQLSVVAILDSIGLDKTAFTAEAYN 204 (290)
Q Consensus 168 ~~~L~~~L~~~~~~~~Vi~IvGmgGiGKTTLa~~vy~ 204 (290)
.+.|.+.+........+|+|-|.+|.||||||+.+..
T Consensus 3 ~~~~~~~~~~~~~~~~iIgI~G~~gsGKStla~~L~~ 39 (193)
T PRK07667 3 TNELINIMKKHKENRFILGIDGLSRSGKTTFVANLKE 39 (193)
T ss_pred HHHHHHHHHhcCCCCEEEEEECCCCCCHHHHHHHHHH
Confidence 4677777776556679999999999999999999987
No 31
>PTZ00301 uridine kinase; Provisional
Probab=97.16 E-value=0.00043 Score=59.27 Aligned_cols=23 Identities=17% Similarity=0.330 Sum_probs=20.8
Q ss_pred cEEEEEEcCCCCChhHHHHHHhc
Q 047336 182 LSVVAILDSIGLDKTAFTAEAYN 204 (290)
Q Consensus 182 ~~Vi~IvGmgGiGKTTLa~~vy~ 204 (290)
..+|+|.|.+|+||||||+.+.+
T Consensus 3 ~~iIgIaG~SgSGKTTla~~l~~ 25 (210)
T PTZ00301 3 CTVIGISGASGSGKSSLSTNIVS 25 (210)
T ss_pred CEEEEEECCCcCCHHHHHHHHHH
Confidence 57999999999999999988765
No 32
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=97.11 E-value=0.00041 Score=60.62 Aligned_cols=20 Identities=20% Similarity=0.238 Sum_probs=17.1
Q ss_pred EEcCCCCChhHHHHHHhccc
Q 047336 187 ILDSIGLDKTAFTAEAYNSS 206 (290)
Q Consensus 187 IvGmgGiGKTTLa~~vy~d~ 206 (290)
|+||+|+||||+++.+.+..
T Consensus 1 ViGpaGSGKTT~~~~~~~~~ 20 (238)
T PF03029_consen 1 VIGPAGSGKTTFCKGLSEWL 20 (238)
T ss_dssp -EESTTSSHHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHH
Confidence 68999999999999998843
No 33
>PF05729 NACHT: NACHT domain
Probab=97.06 E-value=0.00067 Score=54.79 Aligned_cols=42 Identities=14% Similarity=0.064 Sum_probs=30.3
Q ss_pred EEEEEEcCCCCChhHHHHHHhcccccccc----CCeeEEEECCCCC
Q 047336 183 SVVAILDSIGLDKTAFTAEAYNSSYVKHY----FDYLAWIPAPYQY 224 (290)
Q Consensus 183 ~Vi~IvGmgGiGKTTLa~~vy~d~~v~~~----F~~~~wV~vs~~~ 224 (290)
+++.|+|.+|+||||+++.+..+-.-... |...+|++.+...
T Consensus 1 r~l~I~G~~G~GKStll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 46 (166)
T PF05729_consen 1 RVLWISGEPGSGKSTLLRKLAQQLAEEEPPPSKFPYPFFFSLRDIS 46 (166)
T ss_pred CEEEEECCCCCChHHHHHHHHHHHHhcCcccccceEEEEEeehhhh
Confidence 47889999999999999999874332222 4566777765533
No 34
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=97.03 E-value=0.0012 Score=60.88 Aligned_cols=68 Identities=10% Similarity=0.067 Sum_probs=41.6
Q ss_pred CCcccccchhHHHHHHHHhcCCCCcEEEEEEcCCCCChhHHHHHHhccccccccCCeeEEEECCCCCCHHHHHHHHHHHh
Q 047336 158 NRNTVGLDDRMEELLDLLIEGPTQLSVVAILDSIGLDKTAFTAEAYNSSYVKHYFDYLAWIPAPYQYDPDQILDTVTWLS 237 (290)
Q Consensus 158 ~~~~vG~e~~~~~L~~~L~~~~~~~~Vi~IvGmgGiGKTTLa~~vy~d~~v~~~F~~~~wV~vs~~~~~~~ll~~Il~~l 237 (290)
...++|-+....++++ . ..+.-.-.||++|+||||||+.+-. ....+| ..+|...+-.+=++.|+++.
T Consensus 29 Q~HLlg~~~~lrr~v~---~--~~l~SmIl~GPPG~GKTTlA~liA~--~~~~~f-----~~~sAv~~gvkdlr~i~e~a 96 (436)
T COG2256 29 QEHLLGEGKPLRRAVE---A--GHLHSMILWGPPGTGKTTLARLIAG--TTNAAF-----EALSAVTSGVKDLREIIEEA 96 (436)
T ss_pred hHhhhCCCchHHHHHh---c--CCCceeEEECCCCCCHHHHHHHHHH--hhCCce-----EEeccccccHHHHHHHHHHH
Confidence 3445555555444433 2 3466677899999999999999987 334444 44555444444445555444
No 35
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=97.00 E-value=0.00085 Score=65.07 Aligned_cols=45 Identities=11% Similarity=0.306 Sum_probs=39.5
Q ss_pred cccccchhHHHHHHHHhc----CCCCcEEEEEEcCCCCChhHHHHHHhc
Q 047336 160 NTVGLDDRMEELLDLLIE----GPTQLSVVAILDSIGLDKTAFTAEAYN 204 (290)
Q Consensus 160 ~~vG~e~~~~~L~~~L~~----~~~~~~Vi~IvGmgGiGKTTLa~~vy~ 204 (290)
+++|.++.+++|++.|.. -+.+-+++.++|++|+||||||+.+.+
T Consensus 77 d~yGlee~ieriv~~l~~Aa~gl~~~~~IL~LvGPpG~GKSsLa~~la~ 125 (644)
T PRK15455 77 EFYGMEEAIEQIVSYFRHAAQGLEEKKQILYLLGPVGGGKSSLAERLKS 125 (644)
T ss_pred cccCcHHHHHHHHHHHHHHHHhcCCCCceEEEecCCCCCchHHHHHHHH
Confidence 589999999999999943 245568999999999999999999987
No 36
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=97.00 E-value=0.00082 Score=66.02 Aligned_cols=53 Identities=17% Similarity=0.323 Sum_probs=43.8
Q ss_pred CCcccccchhHHHHHHHHhc----CCCCcEEEEEEcCCCCChhHHHHHHhccccccccC
Q 047336 158 NRNTVGLDDRMEELLDLLIE----GPTQLSVVAILDSIGLDKTAFTAEAYNSSYVKHYF 212 (290)
Q Consensus 158 ~~~~vG~e~~~~~L~~~L~~----~~~~~~Vi~IvGmgGiGKTTLa~~vy~d~~v~~~F 212 (290)
+.+-+|.++.+++|+++|.- ...+-++++.||++|+|||+|++.|-+ .....|
T Consensus 322 d~dHYGLekVKeRIlEyLAV~~l~~~~kGpILcLVGPPGVGKTSLgkSIA~--al~Rkf 378 (782)
T COG0466 322 DKDHYGLEKVKERILEYLAVQKLTKKLKGPILCLVGPPGVGKTSLGKSIAK--ALGRKF 378 (782)
T ss_pred cccccCchhHHHHHHHHHHHHHHhccCCCcEEEEECCCCCCchhHHHHHHH--HhCCCE
Confidence 45679999999999999964 344568999999999999999999987 555555
No 37
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=96.99 E-value=0.0006 Score=55.33 Aligned_cols=23 Identities=17% Similarity=0.164 Sum_probs=20.9
Q ss_pred cEEEEEEcCCCCChhHHHHHHhc
Q 047336 182 LSVVAILDSIGLDKTAFTAEAYN 204 (290)
Q Consensus 182 ~~Vi~IvGmgGiGKTTLa~~vy~ 204 (290)
..-|.|.||+|+|||||++.+-+
T Consensus 5 ~mki~ITG~PGvGKtTl~~ki~e 27 (179)
T COG1618 5 AMKIFITGRPGVGKTTLVLKIAE 27 (179)
T ss_pred ceEEEEeCCCCccHHHHHHHHHH
Confidence 45689999999999999999987
No 38
>PRK05480 uridine/cytidine kinase; Provisional
Probab=96.94 E-value=0.00072 Score=57.65 Aligned_cols=26 Identities=19% Similarity=0.340 Sum_probs=23.2
Q ss_pred CCcEEEEEEcCCCCChhHHHHHHhcc
Q 047336 180 TQLSVVAILDSIGLDKTAFTAEAYNS 205 (290)
Q Consensus 180 ~~~~Vi~IvGmgGiGKTTLa~~vy~d 205 (290)
.+..+|+|.|.+|+|||||++.+...
T Consensus 4 ~~~~iI~I~G~sGsGKTTl~~~l~~~ 29 (209)
T PRK05480 4 KKPIIIGIAGGSGSGKTTVASTIYEE 29 (209)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 35789999999999999999999873
No 39
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=96.92 E-value=0.005 Score=53.02 Aligned_cols=53 Identities=15% Similarity=0.135 Sum_probs=38.5
Q ss_pred HhcCCCCcEEEEEEcCCCCChhHHHHHHhccccccccCCeeEEEECCCCCCHHHHH
Q 047336 175 LIEGPTQLSVVAILDSIGLDKTAFTAEAYNSSYVKHYFDYLAWIPAPYQYDPDQIL 230 (290)
Q Consensus 175 L~~~~~~~~Vi~IvGmgGiGKTTLa~~vy~d~~v~~~F~~~~wV~vs~~~~~~~ll 230 (290)
|..+-..-.++-|+|.+|+||||||.++..+ ....-..++||+.- .++...+.
T Consensus 16 l~GGi~~g~i~~i~G~~GsGKT~l~~~la~~--~~~~~~~v~yi~~e-~~~~~r~~ 68 (225)
T PRK09361 16 LGGGFERGTITQIYGPPGSGKTNICLQLAVE--AAKNGKKVIYIDTE-GLSPERFK 68 (225)
T ss_pred hcCCCCCCeEEEEECCCCCCHHHHHHHHHHH--HHHCCCeEEEEECC-CCCHHHHH
Confidence 3344456789999999999999999888763 22334678999987 66665543
No 40
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=96.90 E-value=0.0013 Score=56.51 Aligned_cols=54 Identities=11% Similarity=0.099 Sum_probs=37.1
Q ss_pred cchhHHHHHHHHhcCCCCcEEEEEEcCCCCChhHHHHHHhccccccccCCeeEEEECC
Q 047336 164 LDDRMEELLDLLIEGPTQLSVVAILDSIGLDKTAFTAEAYNSSYVKHYFDYLAWIPAP 221 (290)
Q Consensus 164 ~e~~~~~L~~~L~~~~~~~~Vi~IvGmgGiGKTTLa~~vy~d~~v~~~F~~~~wV~vs 221 (290)
-+...+.+.+++.. .....+-|+|..|+||||||+.+++. ........++++++
T Consensus 22 ~~~~~~~l~~~~~~--~~~~~lll~G~~G~GKT~la~~~~~~--~~~~~~~~~~i~~~ 75 (226)
T TIGR03420 22 NAELLAALRQLAAG--KGDRFLYLWGESGSGKSHLLQAACAA--AEERGKSAIYLPLA 75 (226)
T ss_pred cHHHHHHHHHHHhc--CCCCeEEEECCCCCCHHHHHHHHHHH--HHhcCCcEEEEeHH
Confidence 45566777777553 23567789999999999999999983 33333445555543
No 41
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=96.89 E-value=0.0012 Score=65.52 Aligned_cols=61 Identities=13% Similarity=0.119 Sum_probs=44.7
Q ss_pred CcccccchhHHHHHHHHhcCCCCcEEEEEEcCCCCChhHHHHHHhccccccccCC---eeEEEECC
Q 047336 159 RNTVGLDDRMEELLDLLIEGPTQLSVVAILDSIGLDKTAFTAEAYNSSYVKHYFD---YLAWIPAP 221 (290)
Q Consensus 159 ~~~vG~e~~~~~L~~~L~~~~~~~~Vi~IvGmgGiGKTTLa~~vy~d~~v~~~F~---~~~wV~vs 221 (290)
++++|.+..+..+...+... ....+.|+|++|+||||||+.+++.......+. ..-|+.+.
T Consensus 154 ~~iiGqs~~~~~l~~~ia~~--~~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~~~~fv~i~ 217 (615)
T TIGR02903 154 SEIVGQERAIKALLAKVASP--FPQHIILYGPPGVGKTTAARLALEEAKKLKHTPFAEDAPFVEVD 217 (615)
T ss_pred HhceeCcHHHHHHHHHHhcC--CCCeEEEECCCCCCHHHHHHHHHHhhhhccCCcccCCCCeEEEe
Confidence 46899999999888777533 356799999999999999999998543333332 24566664
No 42
>PRK08233 hypothetical protein; Provisional
Probab=96.86 E-value=0.00089 Score=55.38 Aligned_cols=24 Identities=21% Similarity=0.238 Sum_probs=21.8
Q ss_pred cEEEEEEcCCCCChhHHHHHHhcc
Q 047336 182 LSVVAILDSIGLDKTAFTAEAYNS 205 (290)
Q Consensus 182 ~~Vi~IvGmgGiGKTTLa~~vy~d 205 (290)
..+|+|.|.+|+||||||+.+...
T Consensus 3 ~~iI~I~G~~GsGKtTla~~L~~~ 26 (182)
T PRK08233 3 TKIITIAAVSGGGKTTLTERLTHK 26 (182)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhh
Confidence 579999999999999999999874
No 43
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=96.86 E-value=0.00077 Score=56.83 Aligned_cols=21 Identities=19% Similarity=0.303 Sum_probs=20.0
Q ss_pred EEEEEcCCCCChhHHHHHHhc
Q 047336 184 VVAILDSIGLDKTAFTAEAYN 204 (290)
Q Consensus 184 Vi~IvGmgGiGKTTLa~~vy~ 204 (290)
||+|.|.+|+||||||+.+..
T Consensus 1 IIgI~G~sgSGKTTla~~L~~ 21 (194)
T PF00485_consen 1 IIGIAGPSGSGKTTLAKRLAQ 21 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 799999999999999999987
No 44
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=96.85 E-value=0.0008 Score=52.03 Aligned_cols=21 Identities=24% Similarity=0.227 Sum_probs=19.3
Q ss_pred EEEEcCCCCChhHHHHHHhcc
Q 047336 185 VAILDSIGLDKTAFTAEAYNS 205 (290)
Q Consensus 185 i~IvGmgGiGKTTLa~~vy~d 205 (290)
|.|.|..|+||||+|+.+...
T Consensus 1 I~i~G~~GsGKtTia~~L~~~ 21 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAER 21 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHH
Confidence 689999999999999999883
No 45
>PRK04195 replication factor C large subunit; Provisional
Probab=96.84 E-value=0.003 Score=60.93 Aligned_cols=47 Identities=17% Similarity=0.224 Sum_probs=39.7
Q ss_pred CcccccchhHHHHHHHHhcC--CCCcEEEEEEcCCCCChhHHHHHHhcc
Q 047336 159 RNTVGLDDRMEELLDLLIEG--PTQLSVVAILDSIGLDKTAFTAEAYNS 205 (290)
Q Consensus 159 ~~~vG~e~~~~~L~~~L~~~--~~~~~Vi~IvGmgGiGKTTLa~~vy~d 205 (290)
.+++|.+..++.|.+|+..- ....+.+-|+|++|+||||+|+.+.++
T Consensus 14 ~dlvg~~~~~~~l~~~l~~~~~g~~~~~lLL~GppG~GKTtla~ala~e 62 (482)
T PRK04195 14 SDVVGNEKAKEQLREWIESWLKGKPKKALLLYGPPGVGKTSLAHALAND 62 (482)
T ss_pred HHhcCCHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHH
Confidence 46999999999999999742 222677889999999999999999884
No 46
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=96.83 E-value=0.00094 Score=56.90 Aligned_cols=25 Identities=20% Similarity=0.275 Sum_probs=22.6
Q ss_pred CCcEEEEEEcCCCCChhHHHHHHhc
Q 047336 180 TQLSVVAILDSIGLDKTAFTAEAYN 204 (290)
Q Consensus 180 ~~~~Vi~IvGmgGiGKTTLa~~vy~ 204 (290)
+.-.+|+|+|+.|+|||||++.+..
T Consensus 4 ~~g~vi~I~G~sGsGKSTl~~~l~~ 28 (207)
T TIGR00235 4 PKGIIIGIGGGSGSGKTTVARKIYE 28 (207)
T ss_pred CCeEEEEEECCCCCCHHHHHHHHHH
Confidence 4467999999999999999999986
No 47
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=96.83 E-value=0.0014 Score=57.88 Aligned_cols=47 Identities=21% Similarity=0.246 Sum_probs=39.8
Q ss_pred CcccccchhHHHHHHHHhc---CCCCcEEEEEEcCCCCChhHHHHHHhcc
Q 047336 159 RNTVGLDDRMEELLDLLIE---GPTQLSVVAILDSIGLDKTAFTAEAYNS 205 (290)
Q Consensus 159 ~~~vG~e~~~~~L~~~L~~---~~~~~~Vi~IvGmgGiGKTTLa~~vy~d 205 (290)
.+.+|.++-+++|.=.+.. ....+--+-++|++|+||||||..+-+.
T Consensus 26 ~efiGQ~~vk~~L~ifI~AAk~r~e~lDHvLl~GPPGlGKTTLA~IIA~E 75 (332)
T COG2255 26 DEFIGQEKVKEQLQIFIKAAKKRGEALDHVLLFGPPGLGKTTLAHIIANE 75 (332)
T ss_pred HHhcChHHHHHHHHHHHHHHHhcCCCcCeEEeeCCCCCcHHHHHHHHHHH
Confidence 4689999999988877764 2456888999999999999999999983
No 48
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=96.83 E-value=0.0018 Score=56.10 Aligned_cols=26 Identities=19% Similarity=0.276 Sum_probs=23.3
Q ss_pred CCCcEEEEEEcCCCCChhHHHHHHhc
Q 047336 179 PTQLSVVAILDSIGLDKTAFTAEAYN 204 (290)
Q Consensus 179 ~~~~~Vi~IvGmgGiGKTTLa~~vy~ 204 (290)
..+..+|+|.|..|.|||||++.+..
T Consensus 30 ~~~~~iigi~G~~GsGKTTl~~~L~~ 55 (229)
T PRK09270 30 PQRRTIVGIAGPPGAGKSTLAEFLEA 55 (229)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHH
Confidence 45689999999999999999998876
No 49
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=96.80 E-value=0.0033 Score=53.41 Aligned_cols=52 Identities=13% Similarity=0.124 Sum_probs=38.0
Q ss_pred cCCCCcEEEEEEcCCCCChhHHHHHHhccccccccCCeeEEEECCCCCCHHHHHH
Q 047336 177 EGPTQLSVVAILDSIGLDKTAFTAEAYNSSYVKHYFDYLAWIPAPYQYDPDQILD 231 (290)
Q Consensus 177 ~~~~~~~Vi~IvGmgGiGKTTLa~~vy~d~~v~~~F~~~~wV~vs~~~~~~~ll~ 231 (290)
.+=+.-+++-|+|.+|+|||+|+..+..+ ....-..++||+... ++...+.+
T Consensus 7 GGi~~g~i~~i~G~~GsGKT~l~~~~~~~--~~~~g~~v~yi~~e~-~~~~rl~~ 58 (209)
T TIGR02237 7 GGVERGTITQIYGPPGSGKTNICMILAVN--AARQGKKVVYIDTEG-LSPERFKQ 58 (209)
T ss_pred CCCCCCeEEEEECCCCCCHHHHHHHHHHH--HHhCCCeEEEEECCC-CCHHHHHH
Confidence 34456789999999999999999887652 333456789999865 66555444
No 50
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=96.78 E-value=0.0015 Score=59.67 Aligned_cols=44 Identities=20% Similarity=0.191 Sum_probs=37.1
Q ss_pred CcccccchhHHHHHHHHhcCCCCcEEEEEEcCCCCChhHHHHHHhc
Q 047336 159 RNTVGLDDRMEELLDLLIEGPTQLSVVAILDSIGLDKTAFTAEAYN 204 (290)
Q Consensus 159 ~~~vG~e~~~~~L~~~L~~~~~~~~Vi~IvGmgGiGKTTLa~~vy~ 204 (290)
.+++|.+..++.|.+++..+. .+.+-++|+.|+||||+|+.+.+
T Consensus 15 ~~~~g~~~~~~~L~~~~~~~~--~~~lll~Gp~GtGKT~la~~~~~ 58 (337)
T PRK12402 15 EDILGQDEVVERLSRAVDSPN--LPHLLVQGPPGSGKTAAVRALAR 58 (337)
T ss_pred HHhcCCHHHHHHHHHHHhCCC--CceEEEECCCCCCHHHHHHHHHH
Confidence 468899999999999887643 45577999999999999999876
No 51
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=96.77 E-value=0.0025 Score=64.23 Aligned_cols=50 Identities=18% Similarity=0.230 Sum_probs=36.0
Q ss_pred CcccccchhHH---HHHHHHhcCCCCcEEEEEEcCCCCChhHHHHHHhccccccccC
Q 047336 159 RNTVGLDDRME---ELLDLLIEGPTQLSVVAILDSIGLDKTAFTAEAYNSSYVKHYF 212 (290)
Q Consensus 159 ~~~vG~e~~~~---~L~~~L~~~~~~~~Vi~IvGmgGiGKTTLa~~vy~d~~v~~~F 212 (290)
++++|.+.... .|.+.+..+ .+..+-++|++|+||||||+.+.+ ....+|
T Consensus 28 dd~vGQe~ii~~~~~L~~~i~~~--~~~slLL~GPpGtGKTTLA~aIA~--~~~~~f 80 (725)
T PRK13341 28 EEFVGQDHILGEGRLLRRAIKAD--RVGSLILYGPPGVGKTTLARIIAN--HTRAHF 80 (725)
T ss_pred HHhcCcHHHhhhhHHHHHHHhcC--CCceEEEECCCCCCHHHHHHHHHH--HhcCcc
Confidence 45788877664 454555443 356677999999999999999998 444444
No 52
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=96.76 E-value=0.0014 Score=60.87 Aligned_cols=47 Identities=15% Similarity=0.172 Sum_probs=37.8
Q ss_pred CCcccccchhHHHHHHHHhc---C--------CCCcEEEEEEcCCCCChhHHHHHHhc
Q 047336 158 NRNTVGLDDRMEELLDLLIE---G--------PTQLSVVAILDSIGLDKTAFTAEAYN 204 (290)
Q Consensus 158 ~~~~vG~e~~~~~L~~~L~~---~--------~~~~~Vi~IvGmgGiGKTTLa~~vy~ 204 (290)
-.++.|++..+++|.+.+.. . -...+-+-++|++|+||||||+.+.+
T Consensus 121 ~~di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lakaia~ 178 (364)
T TIGR01242 121 YEDIGGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAH 178 (364)
T ss_pred HHHhCChHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHH
Confidence 35689999999999987742 1 12245588999999999999999998
No 53
>PRK05541 adenylylsulfate kinase; Provisional
Probab=96.75 E-value=0.0015 Score=53.99 Aligned_cols=36 Identities=19% Similarity=0.262 Sum_probs=28.0
Q ss_pred CcEEEEEEcCCCCChhHHHHHHhccccccccCCeeEEE
Q 047336 181 QLSVVAILDSIGLDKTAFTAEAYNSSYVKHYFDYLAWI 218 (290)
Q Consensus 181 ~~~Vi~IvGmgGiGKTTLa~~vy~d~~v~~~F~~~~wV 218 (290)
...+|.+.|+.|+||||+|+.+++ .....+...+++
T Consensus 6 ~~~~I~i~G~~GsGKst~a~~l~~--~l~~~~~~~~~~ 41 (176)
T PRK05541 6 NGYVIWITGLAGSGKTTIAKALYE--RLKLKYSNVIYL 41 (176)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHH--HHHHcCCcEEEE
Confidence 456899999999999999999998 444455555554
No 54
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=96.75 E-value=0.017 Score=51.79 Aligned_cols=82 Identities=11% Similarity=0.094 Sum_probs=57.2
Q ss_pred Ccccccch---hHHHHHHHHhcC-CCCcEEEEEEcCCCCChhHHHHHHhcccccc-----ccCCeeEEEECCCCCCHHHH
Q 047336 159 RNTVGLDD---RMEELLDLLIEG-PTQLSVVAILDSIGLDKTAFTAEAYNSSYVK-----HYFDYLAWIPAPYQYDPDQI 229 (290)
Q Consensus 159 ~~~vG~e~---~~~~L~~~L~~~-~~~~~Vi~IvGmgGiGKTTLa~~vy~d~~v~-----~~F~~~~wV~vs~~~~~~~l 229 (290)
+..||... ..+.|.++|... ....+-+-|||..|.||||+++......-.. ..+ .++.|..+..++...+
T Consensus 34 ~rWIgY~~A~~~L~~L~~Ll~~P~~~Rmp~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~-PVv~vq~P~~p~~~~~ 112 (302)
T PF05621_consen 34 DRWIGYPRAKEALDRLEELLEYPKRHRMPNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERI-PVVYVQMPPEPDERRF 112 (302)
T ss_pred CCeecCHHHHHHHHHHHHHHhCCcccCCCceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccc-cEEEEecCCCCChHHH
Confidence 34566433 344444444432 3456778999999999999999988632111 112 4777888999999999
Q ss_pred HHHHHHHhhhcC
Q 047336 230 LDTVTWLSRRNL 241 (290)
Q Consensus 230 l~~Il~~l~~~~ 241 (290)
...||.++....
T Consensus 113 Y~~IL~~lgaP~ 124 (302)
T PF05621_consen 113 YSAILEALGAPY 124 (302)
T ss_pred HHHHHHHhCccc
Confidence 999999998653
No 55
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=96.69 E-value=0.0054 Score=55.43 Aligned_cols=45 Identities=18% Similarity=0.195 Sum_probs=38.1
Q ss_pred CcccccchhHHHHHHHHhcCCCCcEEEEEEcCCCCChhHHHHHHhcc
Q 047336 159 RNTVGLDDRMEELLDLLIEGPTQLSVVAILDSIGLDKTAFTAEAYNS 205 (290)
Q Consensus 159 ~~~vG~e~~~~~L~~~L~~~~~~~~Vi~IvGmgGiGKTTLa~~vy~d 205 (290)
.+++|.++..+.|.+++..+. .+.+-++|..|+||||+|+.+.+.
T Consensus 17 ~~~~g~~~~~~~l~~~i~~~~--~~~~ll~G~~G~GKt~~~~~l~~~ 61 (319)
T PRK00440 17 DEIVGQEEIVERLKSYVKEKN--MPHLLFAGPPGTGKTTAALALARE 61 (319)
T ss_pred HHhcCcHHHHHHHHHHHhCCC--CCeEEEECCCCCCHHHHHHHHHHH
Confidence 458999999999999987643 445789999999999999999873
No 56
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=96.67 E-value=0.0022 Score=49.48 Aligned_cols=38 Identities=16% Similarity=0.109 Sum_probs=26.6
Q ss_pred EEEEEEcCCCCChhHHHHHHhccccccccCCeeEEEECCC
Q 047336 183 SVVAILDSIGLDKTAFTAEAYNSSYVKHYFDYLAWIPAPY 222 (290)
Q Consensus 183 ~Vi~IvGmgGiGKTTLa~~vy~d~~v~~~F~~~~wV~vs~ 222 (290)
..+.|+|++|+||||+++.+... ........+.+..+.
T Consensus 3 ~~~~l~G~~G~GKTtl~~~l~~~--~~~~~~~~~~~~~~~ 40 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALARE--LGPPGGGVIYIDGED 40 (148)
T ss_pred CEEEEECCCCCcHHHHHHHHHhc--cCCCCCCEEEECCEE
Confidence 57889999999999999999883 333222345555443
No 57
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=96.67 E-value=0.0085 Score=54.41 Aligned_cols=78 Identities=14% Similarity=0.218 Sum_probs=55.8
Q ss_pred CcccccchhHHHHHHHHhcCCCCcEEEEEEcCCCCChhHHHHHHhcc----ccccccCCeeEEEE-CCCCCCHHHHHHHH
Q 047336 159 RNTVGLDDRMEELLDLLIEGPTQLSVVAILDSIGLDKTAFTAEAYNS----SYVKHYFDYLAWIP-APYQYDPDQILDTV 233 (290)
Q Consensus 159 ~~~vG~e~~~~~L~~~L~~~~~~~~Vi~IvGmgGiGKTTLa~~vy~d----~~v~~~F~~~~wV~-vs~~~~~~~ll~~I 233 (290)
.+++|.+..++.|.+++..+. -...+-++|+.|+||||||+.+... .....|+|...|.. -+....++. .+++
T Consensus 4 ~~i~g~~~~~~~l~~~~~~~~-~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~~~~~~~i~v~~-ir~~ 81 (313)
T PRK05564 4 HTIIGHENIKNRIKNSIIKNR-FSHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEFKPINKKSIGVDD-IRNI 81 (313)
T ss_pred hhccCcHHHHHHHHHHHHcCC-CCceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEeccccCCCCCHHH-HHHH
Confidence 358899999999999987653 2346678899999999999888762 12346788877776 355566666 4455
Q ss_pred HHHhh
Q 047336 234 TWLSR 238 (290)
Q Consensus 234 l~~l~ 238 (290)
.+.+.
T Consensus 82 ~~~~~ 86 (313)
T PRK05564 82 IEEVN 86 (313)
T ss_pred HHHHh
Confidence 56554
No 58
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=96.63 E-value=0.0016 Score=54.12 Aligned_cols=24 Identities=13% Similarity=0.170 Sum_probs=21.8
Q ss_pred CcEEEEEEcCCCCChhHHHHHHhc
Q 047336 181 QLSVVAILDSIGLDKTAFTAEAYN 204 (290)
Q Consensus 181 ~~~Vi~IvGmgGiGKTTLa~~vy~ 204 (290)
+.++|.|+|++|+||||+|+.+..
T Consensus 2 ~~~ii~i~G~~GsGKsTl~~~l~~ 25 (188)
T TIGR01360 2 KCKIIFIVGGPGSGKGTQCEKIVE 25 (188)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 468999999999999999998875
No 59
>CHL00095 clpC Clp protease ATP binding subunit
Probab=96.63 E-value=0.0019 Score=66.26 Aligned_cols=44 Identities=16% Similarity=0.289 Sum_probs=36.6
Q ss_pred CcccccchhHHHHHHHHhcCCCCcEEEEEEcCCCCChhHHHHHHhc
Q 047336 159 RNTVGLDDRMEELLDLLIEGPTQLSVVAILDSIGLDKTAFTAEAYN 204 (290)
Q Consensus 159 ~~~vG~e~~~~~L~~~L~~~~~~~~Vi~IvGmgGiGKTTLa~~vy~ 204 (290)
..++||+.+.+.++++|..... +-+-++|.+|+|||++|+.+..
T Consensus 179 ~~~igr~~ei~~~~~~L~r~~~--~n~lL~G~pGvGKTal~~~la~ 222 (821)
T CHL00095 179 DPVIGREKEIERVIQILGRRTK--NNPILIGEPGVGKTAIAEGLAQ 222 (821)
T ss_pred CCCCCcHHHHHHHHHHHccccc--CCeEEECCCCCCHHHHHHHHHH
Confidence 4589999999999999987542 2335999999999999988866
No 60
>PRK06547 hypothetical protein; Provisional
Probab=96.60 E-value=0.0032 Score=52.17 Aligned_cols=26 Identities=19% Similarity=0.121 Sum_probs=23.2
Q ss_pred CCcEEEEEEcCCCCChhHHHHHHhcc
Q 047336 180 TQLSVVAILDSIGLDKTAFTAEAYNS 205 (290)
Q Consensus 180 ~~~~Vi~IvGmgGiGKTTLa~~vy~d 205 (290)
....+|+|.|+.|+||||||+.+.+.
T Consensus 13 ~~~~~i~i~G~~GsGKTt~a~~l~~~ 38 (172)
T PRK06547 13 GGMITVLIDGRSGSGKTTLAGALAAR 38 (172)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 45889999999999999999999764
No 61
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=96.59 E-value=0.0075 Score=52.13 Aligned_cols=55 Identities=15% Similarity=0.195 Sum_probs=39.2
Q ss_pred cCCCCcEEEEEEcCCCCChhHHHHHHhcccccccc----CCeeEEEECCCCCCHHHHHH
Q 047336 177 EGPTQLSVVAILDSIGLDKTAFTAEAYNSSYVKHY----FDYLAWIPAPYQYDPDQILD 231 (290)
Q Consensus 177 ~~~~~~~Vi~IvGmgGiGKTTLa~~vy~d~~v~~~----F~~~~wV~vs~~~~~~~ll~ 231 (290)
.+-..-.++.|+|.+|+|||||+.++.-....... -..++|++-..+|+..++.+
T Consensus 14 GGi~~g~i~~i~G~~GsGKT~l~~~l~~~~~~~~~~~g~~~~viyi~~e~~~~~~rl~~ 72 (235)
T cd01123 14 GGIETGSITEIFGEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYIDTEGTFRPERLVQ 72 (235)
T ss_pred CCCCCCeEEEEECCCCCCHHHHHHHHHHHeeCccccCCCCccEEEEeCCCCcCHHHHHH
Confidence 34456789999999999999999988642222221 35789999888887655543
No 62
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=96.59 E-value=0.0027 Score=56.11 Aligned_cols=45 Identities=20% Similarity=0.221 Sum_probs=32.9
Q ss_pred cccccchhHHHHHHH---Hhc-------C---CCCcEEEEEEcCCCCChhHHHHHHhc
Q 047336 160 NTVGLDDRMEELLDL---LIE-------G---PTQLSVVAILDSIGLDKTAFTAEAYN 204 (290)
Q Consensus 160 ~~vG~e~~~~~L~~~---L~~-------~---~~~~~Vi~IvGmgGiGKTTLa~~vy~ 204 (290)
+++|.+..++.|.+. +.. + .+...-+-++|++|+||||+|+.+.+
T Consensus 7 ~~~Gl~~vk~~i~~~~~~~~~~~~~~~~g~~~~~~~~~vll~GppGtGKTtlA~~ia~ 64 (261)
T TIGR02881 7 RMVGLDEVKALIKEIYAWIQINEKRKEEGLKTSKQVLHMIFKGNPGTGKTTVARILGK 64 (261)
T ss_pred HhcChHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCcceEEEEcCCCCCHHHHHHHHHH
Confidence 488988887776543 311 1 23456677899999999999999975
No 63
>PRK06762 hypothetical protein; Provisional
Probab=96.59 E-value=0.0018 Score=53.00 Aligned_cols=24 Identities=17% Similarity=0.236 Sum_probs=21.2
Q ss_pred cEEEEEEcCCCCChhHHHHHHhcc
Q 047336 182 LSVVAILDSIGLDKTAFTAEAYNS 205 (290)
Q Consensus 182 ~~Vi~IvGmgGiGKTTLa~~vy~d 205 (290)
..+|.|.|+.|+||||+|+.+.+.
T Consensus 2 ~~li~i~G~~GsGKST~A~~L~~~ 25 (166)
T PRK06762 2 TTLIIIRGNSGSGKTTIAKQLQER 25 (166)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 368999999999999999998873
No 64
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=96.57 E-value=0.0018 Score=51.30 Aligned_cols=21 Identities=10% Similarity=0.211 Sum_probs=19.2
Q ss_pred EEEEEcCCCCChhHHHHHHhc
Q 047336 184 VVAILDSIGLDKTAFTAEAYN 204 (290)
Q Consensus 184 Vi~IvGmgGiGKTTLa~~vy~ 204 (290)
||-++|++|+||||+|+.+..
T Consensus 1 lii~~G~pgsGKSt~a~~l~~ 21 (143)
T PF13671_consen 1 LIILCGPPGSGKSTLAKRLAK 21 (143)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 578899999999999999985
No 65
>PF13173 AAA_14: AAA domain
Probab=96.56 E-value=0.0026 Score=49.86 Aligned_cols=40 Identities=10% Similarity=0.093 Sum_probs=30.0
Q ss_pred cEEEEEEcCCCCChhHHHHHHhccccccccCCeeEEEECCCCC
Q 047336 182 LSVVAILDSIGLDKTAFTAEAYNSSYVKHYFDYLAWIPAPYQY 224 (290)
Q Consensus 182 ~~Vi~IvGmgGiGKTTLa~~vy~d~~v~~~F~~~~wV~vs~~~ 224 (290)
-+++.|.|+-|+|||||++.++.+.. .....++++.....
T Consensus 2 ~~~~~l~G~R~vGKTtll~~~~~~~~---~~~~~~yi~~~~~~ 41 (128)
T PF13173_consen 2 RKIIILTGPRGVGKTTLLKQLAKDLL---PPENILYINFDDPR 41 (128)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhc---ccccceeeccCCHH
Confidence 46889999999999999999987432 33456777765543
No 66
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=96.54 E-value=0.017 Score=54.48 Aligned_cols=81 Identities=11% Similarity=0.023 Sum_probs=54.8
Q ss_pred CCCcccccchhHHHHHHHHhcC--CCCcEEEEEEcCCCCChhHHHHHHhccccccc-cCCeeEEEECCCCCCHHHHHHHH
Q 047336 157 KNRNTVGLDDRMEELLDLLIEG--PTQLSVVAILDSIGLDKTAFTAEAYNSSYVKH-YFDYLAWIPAPYQYDPDQILDTV 233 (290)
Q Consensus 157 ~~~~~vG~e~~~~~L~~~L~~~--~~~~~Vi~IvGmgGiGKTTLa~~vy~d~~v~~-~F~~~~wV~vs~~~~~~~ll~~I 233 (290)
.++.++||+.++..+.+|+... .....-+=|.|-+|.|||.+...||.+..-.. .|. .+.+.--.=-....++..|
T Consensus 148 ~p~~l~gRe~e~~~v~~F~~~hle~~t~gSlYVsG~PGtgkt~~l~rvl~~~~~~~~~~~-~v~inc~sl~~~~aiF~kI 226 (529)
T KOG2227|consen 148 PPGTLKGRELEMDIVREFFSLHLELNTSGSLYVSGQPGTGKTALLSRVLDSLSKSSKSPV-TVYINCTSLTEASAIFKKI 226 (529)
T ss_pred CCCCccchHHHHHHHHHHHHhhhhcccCcceEeeCCCCcchHHHHHHHHHhhhhhcccce-eEEEeeccccchHHHHHHH
Confidence 4567999999999999999852 33455566789999999999999998542211 122 2333221112356778888
Q ss_pred HHHhh
Q 047336 234 TWLSR 238 (290)
Q Consensus 234 l~~l~ 238 (290)
...+.
T Consensus 227 ~~~~~ 231 (529)
T KOG2227|consen 227 FSSLL 231 (529)
T ss_pred HHHHH
Confidence 77773
No 67
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=96.54 E-value=0.0018 Score=45.14 Aligned_cols=22 Identities=18% Similarity=0.291 Sum_probs=19.7
Q ss_pred EEEEEcCCCCChhHHHHHHhcc
Q 047336 184 VVAILDSIGLDKTAFTAEAYNS 205 (290)
Q Consensus 184 Vi~IvGmgGiGKTTLa~~vy~d 205 (290)
+|+|.|..|+||||+++.+-+.
T Consensus 1 ~i~i~G~~gsGKst~~~~l~~~ 22 (69)
T cd02019 1 IIAITGGSGSGKSTVAKKLAEQ 22 (69)
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 5789999999999999988874
No 68
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=96.53 E-value=0.0027 Score=65.29 Aligned_cols=79 Identities=15% Similarity=0.148 Sum_probs=51.5
Q ss_pred CcccccchhHHHHHHHHhcCCCCcEEEEEEcCCCCChhHHHHHHhcccc---cc-ccCCeeEE-EECCC-----CC--CH
Q 047336 159 RNTVGLDDRMEELLDLLIEGPTQLSVVAILDSIGLDKTAFTAEAYNSSY---VK-HYFDYLAW-IPAPY-----QY--DP 226 (290)
Q Consensus 159 ~~~vG~e~~~~~L~~~L~~~~~~~~Vi~IvGmgGiGKTTLa~~vy~d~~---v~-~~F~~~~w-V~vs~-----~~--~~ 226 (290)
..++|++.+..+++..|.... ..-+-++|.+|+||||||+.+...-. +. ...+.++| +.++. .+ ..
T Consensus 187 d~~iGr~~ei~~~i~~l~r~~--~~n~lLvG~pGvGKTal~~~La~~i~~~~v~~~l~~~~i~~l~l~~l~ag~~~~ge~ 264 (852)
T TIGR03345 187 DPVLGRDDEIRQMIDILLRRR--QNNPILTGEAGVGKTAVVEGLALRIAAGDVPPALRNVRLLSLDLGLLQAGASVKGEF 264 (852)
T ss_pred CcccCCHHHHHHHHHHHhcCC--cCceeEECCCCCCHHHHHHHHHHHHhhCCCCccccCCeEEEeehhhhhcccccchHH
Confidence 468999999999999998754 23344899999999999998876311 11 12344454 22221 22 33
Q ss_pred HHHHHHHHHHhhh
Q 047336 227 DQILDTVTWLSRR 239 (290)
Q Consensus 227 ~~ll~~Il~~l~~ 239 (290)
..-++.++..+..
T Consensus 265 e~~lk~ii~e~~~ 277 (852)
T TIGR03345 265 ENRLKSVIDEVKA 277 (852)
T ss_pred HHHHHHHHHHHHh
Confidence 4567777776643
No 69
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=96.49 E-value=0.0023 Score=54.75 Aligned_cols=25 Identities=20% Similarity=0.298 Sum_probs=23.1
Q ss_pred CCcEEEEEEcCCCCChhHHHHHHhc
Q 047336 180 TQLSVVAILDSIGLDKTAFTAEAYN 204 (290)
Q Consensus 180 ~~~~Vi~IvGmgGiGKTTLa~~vy~ 204 (290)
.++.+|||-|.+|+||||+|+.+++
T Consensus 6 ~~~iiIgIaG~SgSGKTTva~~l~~ 30 (218)
T COG0572 6 EKVIIIGIAGGSGSGKTTVAKELSE 30 (218)
T ss_pred CceEEEEEeCCCCCCHHHHHHHHHH
Confidence 4568999999999999999999998
No 70
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=96.48 E-value=0.003 Score=59.27 Aligned_cols=47 Identities=15% Similarity=0.179 Sum_probs=37.7
Q ss_pred CcccccchhHHHHHHHHhc---C--------CCCcEEEEEEcCCCCChhHHHHHHhcc
Q 047336 159 RNTVGLDDRMEELLDLLIE---G--------PTQLSVVAILDSIGLDKTAFTAEAYNS 205 (290)
Q Consensus 159 ~~~vG~e~~~~~L~~~L~~---~--------~~~~~Vi~IvGmgGiGKTTLa~~vy~d 205 (290)
.++.|+++.+++|.+.+.. . -...+-|-++|++|+|||+||+.+.+.
T Consensus 131 ~di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lAkaia~~ 188 (389)
T PRK03992 131 EDIGGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHE 188 (389)
T ss_pred HHhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHHHHHHHH
Confidence 4689999999999987642 1 133556788999999999999999983
No 71
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=96.48 E-value=0.0017 Score=54.86 Aligned_cols=21 Identities=24% Similarity=0.363 Sum_probs=19.5
Q ss_pred EEEEEcCCCCChhHHHHHHhc
Q 047336 184 VVAILDSIGLDKTAFTAEAYN 204 (290)
Q Consensus 184 Vi~IvGmgGiGKTTLa~~vy~ 204 (290)
+|+|.|..|+|||||++.+..
T Consensus 1 iigi~G~~GsGKSTl~~~l~~ 21 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIE 21 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999876
No 72
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=96.45 E-value=0.0036 Score=56.72 Aligned_cols=46 Identities=15% Similarity=0.113 Sum_probs=38.8
Q ss_pred CcccccchhHHHHHHHHhcCCCCcEEEEEEcCCCCChhHHHHHHhcc
Q 047336 159 RNTVGLDDRMEELLDLLIEGPTQLSVVAILDSIGLDKTAFTAEAYNS 205 (290)
Q Consensus 159 ~~~vG~e~~~~~L~~~L~~~~~~~~Vi~IvGmgGiGKTTLa~~vy~d 205 (290)
.+++|.+...+.+..++..+. -..++-++|++|+||||+|+.+++.
T Consensus 21 ~~~~~~~~~~~~l~~~~~~~~-~~~~lll~G~~G~GKT~la~~l~~~ 66 (316)
T PHA02544 21 DECILPAADKETFKSIVKKGR-IPNMLLHSPSPGTGKTTVAKALCNE 66 (316)
T ss_pred HHhcCcHHHHHHHHHHHhcCC-CCeEEEeeCcCCCCHHHHHHHHHHH
Confidence 568999999999999988643 3467777999999999999999883
No 73
>PRK04841 transcriptional regulator MalT; Provisional
Probab=96.44 E-value=0.0082 Score=62.09 Aligned_cols=65 Identities=17% Similarity=0.249 Sum_probs=49.2
Q ss_pred HHHHHHHHhcCCCCcEEEEEEcCCCCChhHHHHHHhccccccccCCeeEEEECC-CCCCHHHHHHHHHHHhhh
Q 047336 168 MEELLDLLIEGPTQLSVVAILDSIGLDKTAFTAEAYNSSYVKHYFDYLAWIPAP-YQYDPDQILDTVTWLSRR 239 (290)
Q Consensus 168 ~~~L~~~L~~~~~~~~Vi~IvGmgGiGKTTLa~~vy~d~~v~~~F~~~~wV~vs-~~~~~~~ll~~Il~~l~~ 239 (290)
+..|.+.|... ...+++.|.|++|.|||||+...... ++.++|+++. .+-++..++..++..+..
T Consensus 19 R~rl~~~l~~~-~~~~~~~v~apaG~GKTtl~~~~~~~------~~~~~w~~l~~~d~~~~~f~~~l~~~l~~ 84 (903)
T PRK04841 19 RERLLAKLSGA-NNYRLVLVTSPAGYGKTTLISQWAAG------KNNLGWYSLDESDNQPERFASYLIAALQQ 84 (903)
T ss_pred chHHHHHHhcc-cCCCeEEEECCCCCCHHHHHHHHHHh------CCCeEEEecCcccCCHHHHHHHHHHHHHH
Confidence 34566666543 45889999999999999999987752 3479999996 445677888888888853
No 74
>PLN03025 replication factor C subunit; Provisional
Probab=96.43 E-value=0.0033 Score=57.25 Aligned_cols=44 Identities=18% Similarity=0.228 Sum_probs=35.3
Q ss_pred CcccccchhHHHHHHHHhcCCCCcEEEEEEcCCCCChhHHHHHHhc
Q 047336 159 RNTVGLDDRMEELLDLLIEGPTQLSVVAILDSIGLDKTAFTAEAYN 204 (290)
Q Consensus 159 ~~~vG~e~~~~~L~~~L~~~~~~~~Vi~IvGmgGiGKTTLa~~vy~ 204 (290)
.+++|.++..+.|..++..+. .+-+-++|++|+||||+|+.+.+
T Consensus 13 ~~~~g~~~~~~~L~~~~~~~~--~~~lll~Gp~G~GKTtla~~la~ 56 (319)
T PLN03025 13 DDIVGNEDAVSRLQVIARDGN--MPNLILSGPPGTGKTTSILALAH 56 (319)
T ss_pred HHhcCcHHHHHHHHHHHhcCC--CceEEEECCCCCCHHHHHHHHHH
Confidence 458898888888888776543 44466899999999999998876
No 75
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=96.43 E-value=0.01 Score=50.99 Aligned_cols=52 Identities=13% Similarity=0.211 Sum_probs=37.4
Q ss_pred cCCCCcEEEEEEcCCCCChhHHHHHHhccccccccC------CeeEEEECCCCCCHHHHH
Q 047336 177 EGPTQLSVVAILDSIGLDKTAFTAEAYNSSYVKHYF------DYLAWIPAPYQYDPDQIL 230 (290)
Q Consensus 177 ~~~~~~~Vi~IvGmgGiGKTTLa~~vy~d~~v~~~F------~~~~wV~vs~~~~~~~ll 230 (290)
.+-..-.++.|+|.+|+|||||+..+.-.. ...- ..++|++....++...+.
T Consensus 14 GG~~~g~v~~I~G~~GsGKT~l~~~ia~~~--~~~~~~~g~~~~v~yi~~e~~~~~~rl~ 71 (226)
T cd01393 14 GGIPTGRITEIFGEFGSGKTQLCLQLAVEA--QLPGELGGLEGKVVYIDTEGAFRPERLV 71 (226)
T ss_pred CCCcCCcEEEEeCCCCCChhHHHHHHHHHh--hcccccCCCcceEEEEecCCCCCHHHHH
Confidence 444567899999999999999998876521 1222 456888888777765554
No 76
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=96.42 E-value=0.0021 Score=49.90 Aligned_cols=51 Identities=12% Similarity=0.047 Sum_probs=33.2
Q ss_pred EEEEcCCCCChhHHHHHHhccccccccCCeeEEEECCCC-----CCHHHHHHHHHHHhhhc
Q 047336 185 VAILDSIGLDKTAFTAEAYNSSYVKHYFDYLAWIPAPYQ-----YDPDQILDTVTWLSRRN 240 (290)
Q Consensus 185 i~IvGmgGiGKTTLa~~vy~d~~v~~~F~~~~wV~vs~~-----~~~~~ll~~Il~~l~~~ 240 (290)
|-|+|++|+||||||+.+.++- ..+ .+.+..+.- -+...-+.+++.+....
T Consensus 1 ill~G~~G~GKT~l~~~la~~l--~~~---~~~i~~~~~~~~~~~~~~~~i~~~~~~~~~~ 56 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYL--GFP---FIEIDGSELISSYAGDSEQKIRDFFKKAKKS 56 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHT--TSE---EEEEETTHHHTSSTTHHHHHHHHHHHHHHHT
T ss_pred CEEECcCCCCeeHHHHHHHhhc--ccc---ccccccccccccccccccccccccccccccc
Confidence 4589999999999999999843 212 345554321 13445666777665443
No 77
>PRK03839 putative kinase; Provisional
Probab=96.41 E-value=0.0023 Score=53.10 Aligned_cols=22 Identities=23% Similarity=0.321 Sum_probs=19.9
Q ss_pred EEEEEcCCCCChhHHHHHHhcc
Q 047336 184 VVAILDSIGLDKTAFTAEAYNS 205 (290)
Q Consensus 184 Vi~IvGmgGiGKTTLa~~vy~d 205 (290)
.|.|+|++|+||||+++.+.+.
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~ 23 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEK 23 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5889999999999999999874
No 78
>PRK04040 adenylate kinase; Provisional
Probab=96.41 E-value=0.0025 Score=53.57 Aligned_cols=23 Identities=26% Similarity=0.377 Sum_probs=21.0
Q ss_pred cEEEEEEcCCCCChhHHHHHHhc
Q 047336 182 LSVVAILDSIGLDKTAFTAEAYN 204 (290)
Q Consensus 182 ~~Vi~IvGmgGiGKTTLa~~vy~ 204 (290)
..+|.|+|++|+||||+++.+.+
T Consensus 2 ~~~i~v~G~pG~GKtt~~~~l~~ 24 (188)
T PRK04040 2 MKVVVVTGVPGVGKTTVLNKALE 24 (188)
T ss_pred CeEEEEEeCCCCCHHHHHHHHHH
Confidence 36899999999999999999977
No 79
>PRK07952 DNA replication protein DnaC; Validated
Probab=96.39 E-value=0.022 Score=49.90 Aligned_cols=50 Identities=12% Similarity=0.036 Sum_probs=31.0
Q ss_pred HHHHHHHHhcCCCCcEEEEEEcCCCCChhHHHHHHhccccccccCCeeEEEE
Q 047336 168 MEELLDLLIEGPTQLSVVAILDSIGLDKTAFTAEAYNSSYVKHYFDYLAWIP 219 (290)
Q Consensus 168 ~~~L~~~L~~~~~~~~Vi~IvGmgGiGKTTLa~~vy~d~~v~~~F~~~~wV~ 219 (290)
...+.++...-......+-++|.+|+|||+||..+.+. ....-..+++++
T Consensus 85 l~~a~~~~~~~~~~~~~~~l~G~~GtGKThLa~aia~~--l~~~g~~v~~it 134 (244)
T PRK07952 85 LSKARQYVEEFDGNIASFIFSGKPGTGKNHLAAAICNE--LLLRGKSVLIIT 134 (244)
T ss_pred HHHHHHHHHhhccCCceEEEECCCCCCHHHHHHHHHHH--HHhcCCeEEEEE
Confidence 34444444322223456789999999999999999984 332223445554
No 80
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.38 E-value=0.003 Score=61.16 Aligned_cols=46 Identities=22% Similarity=0.148 Sum_probs=37.4
Q ss_pred CcccccchhHHHHHHHHhcCCCCcEEEEEEcCCCCChhHHHHHHhcc
Q 047336 159 RNTVGLDDRMEELLDLLIEGPTQLSVVAILDSIGLDKTAFTAEAYNS 205 (290)
Q Consensus 159 ~~~vG~e~~~~~L~~~L~~~~~~~~Vi~IvGmgGiGKTTLa~~vy~d 205 (290)
.+++|.+..++.|.+++..+. -...+-++|++|+||||+|+.+.+.
T Consensus 14 ~dvvGq~~v~~~L~~~i~~~~-l~ha~Lf~GppGtGKTTlA~~lA~~ 59 (504)
T PRK14963 14 DEVVGQEHVKEVLLAALRQGR-LGHAYLFSGPRGVGKTTTARLIAMA 59 (504)
T ss_pred HHhcChHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 468999999999999888653 2245689999999999999988763
No 81
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=96.36 E-value=0.012 Score=52.70 Aligned_cols=24 Identities=29% Similarity=0.325 Sum_probs=21.2
Q ss_pred CcEEEEEEcCCCCChhHHHHHHhc
Q 047336 181 QLSVVAILDSIGLDKTAFTAEAYN 204 (290)
Q Consensus 181 ~~~Vi~IvGmgGiGKTTLa~~vy~ 204 (290)
+..+|+++|+.|+||||++..+..
T Consensus 193 ~~~vi~~vGptGvGKTTt~~kLa~ 216 (282)
T TIGR03499 193 QGGVIALVGPTGVGKTTTLAKLAA 216 (282)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 467999999999999999988766
No 82
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=96.34 E-value=0.004 Score=63.12 Aligned_cols=79 Identities=16% Similarity=0.154 Sum_probs=51.4
Q ss_pred CcccccchhHHHHHHHHhcCCCCcEEEEEEcCCCCChhHHHHHHhccc---ccccc-CCeeEEEEC-C-----CCC--CH
Q 047336 159 RNTVGLDDRMEELLDLLIEGPTQLSVVAILDSIGLDKTAFTAEAYNSS---YVKHY-FDYLAWIPA-P-----YQY--DP 226 (290)
Q Consensus 159 ~~~vG~e~~~~~L~~~L~~~~~~~~Vi~IvGmgGiGKTTLa~~vy~d~---~v~~~-F~~~~wV~v-s-----~~~--~~ 226 (290)
+.++|++++.+.++..|.... ..-+-++|.+|+|||++|+.+...- .+... .++++|..- + ..+ +.
T Consensus 182 ~~~igr~~ei~~~~~~L~~~~--~~n~lL~G~pG~GKT~l~~~la~~~~~~~~p~~l~~~~~~~~~~~~l~a~~~~~g~~ 259 (731)
T TIGR02639 182 DPLIGREDELERTIQVLCRRK--KNNPLLVGEPGVGKTAIAEGLALRIAEGKVPENLKNAKIYSLDMGSLLAGTKYRGDF 259 (731)
T ss_pred CcccCcHHHHHHHHHHHhcCC--CCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCeEEEecHHHHhhhccccchH
Confidence 468999999999999887654 2234589999999999999887732 11111 245555421 1 112 34
Q ss_pred HHHHHHHHHHhhh
Q 047336 227 DQILDTVTWLSRR 239 (290)
Q Consensus 227 ~~ll~~Il~~l~~ 239 (290)
..-+++++..+..
T Consensus 260 e~~l~~i~~~~~~ 272 (731)
T TIGR02639 260 EERLKAVVSEIEK 272 (731)
T ss_pred HHHHHHHHHHHhc
Confidence 4566777766643
No 83
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=96.33 E-value=0.0021 Score=55.40 Aligned_cols=21 Identities=14% Similarity=0.245 Sum_probs=19.5
Q ss_pred EEEEEcCCCCChhHHHHHHhc
Q 047336 184 VVAILDSIGLDKTAFTAEAYN 204 (290)
Q Consensus 184 Vi~IvGmgGiGKTTLa~~vy~ 204 (290)
+|+|.|..|+||||||+.+..
T Consensus 1 IigI~G~sGSGKTTla~~L~~ 21 (220)
T cd02025 1 IIGIAGSVAVGKSTTARVLQA 21 (220)
T ss_pred CEEeeCCCCCCHHHHHHHHHH
Confidence 589999999999999999876
No 84
>PRK10865 protein disaggregation chaperone; Provisional
Probab=96.33 E-value=0.0042 Score=63.97 Aligned_cols=44 Identities=16% Similarity=0.271 Sum_probs=36.5
Q ss_pred CcccccchhHHHHHHHHhcCCCCcEEEEEEcCCCCChhHHHHHHhc
Q 047336 159 RNTVGLDDRMEELLDLLIEGPTQLSVVAILDSIGLDKTAFTAEAYN 204 (290)
Q Consensus 159 ~~~vG~e~~~~~L~~~L~~~~~~~~Vi~IvGmgGiGKTTLa~~vy~ 204 (290)
..++|++.+...++..|.... ..-+-++|.+|+||||||+.+-.
T Consensus 178 ~~vigr~~ei~~~i~iL~r~~--~~n~lL~G~pGvGKT~l~~~la~ 221 (857)
T PRK10865 178 DPVIGRDEEIRRTIQVLQRRT--KNNPVLIGEPGVGKTAIVEGLAQ 221 (857)
T ss_pred CcCCCCHHHHHHHHHHHhcCC--cCceEEECCCCCCHHHHHHHHHH
Confidence 459999999999999998754 22344899999999999988776
No 85
>PRK14738 gmk guanylate kinase; Provisional
Probab=96.30 E-value=0.0035 Score=53.43 Aligned_cols=31 Identities=26% Similarity=0.318 Sum_probs=25.8
Q ss_pred HHhcCCCCcEEEEEEcCCCCChhHHHHHHhc
Q 047336 174 LLIEGPTQLSVVAILDSIGLDKTAFTAEAYN 204 (290)
Q Consensus 174 ~L~~~~~~~~Vi~IvGmgGiGKTTLa~~vy~ 204 (290)
|+..+......|.|+|+.|+|||||++.+.+
T Consensus 5 ~~~~~~~~~~~ivi~GpsG~GK~tl~~~L~~ 35 (206)
T PRK14738 5 WLFNKPAKPLLVVISGPSGVGKDAVLARMRE 35 (206)
T ss_pred cccCCCCCCeEEEEECcCCCCHHHHHHHHHh
Confidence 4444556788999999999999999999976
No 86
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=96.30 E-value=0.0048 Score=48.78 Aligned_cols=44 Identities=14% Similarity=0.200 Sum_probs=31.5
Q ss_pred EEEEcCCCCChhHHHHHHhccccccccCCeeEEEECCCCCCHHHHHHHH
Q 047336 185 VAILDSIGLDKTAFTAEAYNSSYVKHYFDYLAWIPAPYQYDPDQILDTV 233 (290)
Q Consensus 185 i~IvGmgGiGKTTLa~~vy~d~~v~~~F~~~~wV~vs~~~~~~~ll~~I 233 (290)
|-++|.+|+|||+||+.+.. .... ...-+.++...+..+++...
T Consensus 2 vlL~G~~G~GKt~l~~~la~--~~~~---~~~~i~~~~~~~~~dl~g~~ 45 (139)
T PF07728_consen 2 VLLVGPPGTGKTTLARELAA--LLGR---PVIRINCSSDTTEEDLIGSY 45 (139)
T ss_dssp EEEEESSSSSHHHHHHHHHH--HHTC---EEEEEE-TTTSTHHHHHCEE
T ss_pred EEEECCCCCCHHHHHHHHHH--Hhhc---ceEEEEeccccccccceeee
Confidence 45899999999999999987 3311 23446778888888776543
No 87
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=96.28 E-value=0.0035 Score=52.24 Aligned_cols=22 Identities=36% Similarity=0.440 Sum_probs=20.0
Q ss_pred EEEEEcCCCCChhHHHHHHhcc
Q 047336 184 VVAILDSIGLDKTAFTAEAYNS 205 (290)
Q Consensus 184 Vi~IvGmgGiGKTTLa~~vy~d 205 (290)
+|+|.|..|+||||||+.+...
T Consensus 1 ii~i~G~sgsGKttla~~l~~~ 22 (179)
T cd02028 1 VVGIAGPSGSGKTTFAKKLSNQ 22 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999873
No 88
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=96.28 E-value=0.022 Score=54.11 Aligned_cols=24 Identities=17% Similarity=0.173 Sum_probs=21.6
Q ss_pred CcEEEEEEcCCCCChhHHHHHHhc
Q 047336 181 QLSVVAILDSIGLDKTAFTAEAYN 204 (290)
Q Consensus 181 ~~~Vi~IvGmgGiGKTTLa~~vy~ 204 (290)
...+|.++|.+|+||||++..+..
T Consensus 94 ~p~vI~lvG~~GsGKTTtaakLA~ 117 (437)
T PRK00771 94 KPQTIMLVGLQGSGKTTTAAKLAR 117 (437)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHH
Confidence 478999999999999999988876
No 89
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=96.28 E-value=0.0027 Score=50.39 Aligned_cols=21 Identities=19% Similarity=0.210 Sum_probs=19.4
Q ss_pred EEEEEcCCCCChhHHHHHHhc
Q 047336 184 VVAILDSIGLDKTAFTAEAYN 204 (290)
Q Consensus 184 Vi~IvGmgGiGKTTLa~~vy~ 204 (290)
||.|+|..|+||||+|+.+-.
T Consensus 1 ~I~i~G~~GsGKst~a~~la~ 21 (147)
T cd02020 1 IIAIDGPAGSGKSTVAKLLAK 21 (147)
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999998876
No 90
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=96.27 E-value=0.0057 Score=54.00 Aligned_cols=53 Identities=19% Similarity=0.171 Sum_probs=40.0
Q ss_pred cCCCCcEEEEEEcCCCCChhHHHHHHhccccccccCCeeEEEECCCCCCHHHHHHHH
Q 047336 177 EGPTQLSVVAILDSIGLDKTAFTAEAYNSSYVKHYFDYLAWIPAPYQYDPDQILDTV 233 (290)
Q Consensus 177 ~~~~~~~Vi~IvGmgGiGKTTLa~~vy~d~~v~~~F~~~~wV~vs~~~~~~~ll~~I 233 (290)
.+=+.-+++.|.|.+|+|||+++.+.-. ....++..++||+...++ ..+++..
T Consensus 18 GG~p~g~~~lI~G~pGsGKT~f~~qfl~--~~~~~ge~vlyvs~~e~~--~~l~~~~ 70 (260)
T COG0467 18 GGLPRGSVVLITGPPGTGKTIFALQFLY--EGAREGEPVLYVSTEESP--EELLENA 70 (260)
T ss_pred CCCcCCcEEEEEcCCCCcHHHHHHHHHH--HHHhcCCcEEEEEecCCH--HHHHHHH
Confidence 4446788999999999999999977666 445568899999988753 3444443
No 91
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=96.27 E-value=0.0085 Score=51.65 Aligned_cols=43 Identities=14% Similarity=0.247 Sum_probs=28.4
Q ss_pred cccchhH-HHHHHHHhcCCCCcEEEEEEcCCCCChhHHHHHHhcc
Q 047336 162 VGLDDRM-EELLDLLIEGPTQLSVVAILDSIGLDKTAFTAEAYNS 205 (290)
Q Consensus 162 vG~e~~~-~~L~~~L~~~~~~~~Vi~IvGmgGiGKTTLa~~vy~d 205 (290)
.|.+... ..+.++.. +......+-|+|..|+|||+||+.+++.
T Consensus 22 ~~~~~~~~~~l~~~~~-~~~~~~~~~l~G~~G~GKT~La~ai~~~ 65 (227)
T PRK08903 22 AGENAELVARLRELAA-GPVADRFFYLWGEAGSGRSHLLQALVAD 65 (227)
T ss_pred cCCcHHHHHHHHHHHh-ccCCCCeEEEECCCCCCHHHHHHHHHHH
Confidence 4544333 33333333 2233456789999999999999999883
No 92
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=96.26 E-value=0.0042 Score=51.47 Aligned_cols=24 Identities=21% Similarity=0.224 Sum_probs=22.1
Q ss_pred CcEEEEEEcCCCCChhHHHHHHhc
Q 047336 181 QLSVVAILDSIGLDKTAFTAEAYN 204 (290)
Q Consensus 181 ~~~Vi~IvGmgGiGKTTLa~~vy~ 204 (290)
..++++|+|..|+|||||++.+..
T Consensus 5 ~~~ii~ivG~sgsGKTTLi~~li~ 28 (173)
T PRK10751 5 MIPLLAIAAWSGTGKTTLLKKLIP 28 (173)
T ss_pred CceEEEEECCCCChHHHHHHHHHH
Confidence 467999999999999999999987
No 93
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=96.25 E-value=0.0035 Score=50.12 Aligned_cols=39 Identities=13% Similarity=0.087 Sum_probs=27.0
Q ss_pred EEEEEEcCCCCChhHHHHHHhccccccccCCeeEEEECCC
Q 047336 183 SVVAILDSIGLDKTAFTAEAYNSSYVKHYFDYLAWIPAPY 222 (290)
Q Consensus 183 ~Vi~IvGmgGiGKTTLa~~vy~d~~v~~~F~~~~wV~vs~ 222 (290)
++|+|+|.-|+|||||++.+.+.. .+..+...+..+...
T Consensus 1 pvv~VvG~~~sGKTTl~~~Li~~l-~~~g~~v~~ik~~~~ 39 (140)
T PF03205_consen 1 PVVQVVGPKNSGKTTLIRKLINEL-KRRGYRVAVIKHTDH 39 (140)
T ss_dssp -EEEEEESTTSSHHHHHHHHHHHH-HHTT--EEEEEE-ST
T ss_pred CEEEEECCCCCCHHHHHHHHHHHH-hHcCCceEEEEEccC
Confidence 589999999999999999999842 223455555666555
No 94
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=96.24 E-value=0.0051 Score=60.62 Aligned_cols=53 Identities=19% Similarity=0.402 Sum_probs=44.0
Q ss_pred CCcccccchhHHHHHHHHhc----CCCCcEEEEEEcCCCCChhHHHHHHhccccccccC
Q 047336 158 NRNTVGLDDRMEELLDLLIE----GPTQLSVVAILDSIGLDKTAFTAEAYNSSYVKHYF 212 (290)
Q Consensus 158 ~~~~vG~e~~~~~L~~~L~~----~~~~~~Vi~IvGmgGiGKTTLa~~vy~d~~v~~~F 212 (290)
+.+-+|+++-+++|.+++-- ++.+-++++.+|++|+|||++|+.|-. .....|
T Consensus 410 deDHYgm~dVKeRILEfiAV~kLrgs~qGkIlCf~GPPGVGKTSI~kSIA~--ALnRkF 466 (906)
T KOG2004|consen 410 DEDHYGMEDVKERILEFIAVGKLRGSVQGKILCFVGPPGVGKTSIAKSIAR--ALNRKF 466 (906)
T ss_pred cccccchHHHHHHHHHHHHHHhhcccCCCcEEEEeCCCCCCcccHHHHHHH--HhCCce
Confidence 45679999999999999863 456778999999999999999999987 444444
No 95
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=96.23 E-value=0.0028 Score=53.30 Aligned_cols=22 Identities=18% Similarity=0.110 Sum_probs=20.2
Q ss_pred EEEEEcCCCCChhHHHHHHhcc
Q 047336 184 VVAILDSIGLDKTAFTAEAYNS 205 (290)
Q Consensus 184 Vi~IvGmgGiGKTTLa~~vy~d 205 (290)
+|+|.|.+|+||||||+.+...
T Consensus 1 ii~i~G~sgsGKTtla~~l~~~ 22 (187)
T cd02024 1 IVGISGVTNSGKTTLAKLLQRI 22 (187)
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999884
No 96
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=96.23 E-value=0.0035 Score=51.84 Aligned_cols=22 Identities=14% Similarity=0.283 Sum_probs=20.6
Q ss_pred EEEEEEcCCCCChhHHHHHHhc
Q 047336 183 SVVAILDSIGLDKTAFTAEAYN 204 (290)
Q Consensus 183 ~Vi~IvGmgGiGKTTLa~~vy~ 204 (290)
.+|.|+|+.|+|||||++.+.+
T Consensus 2 ~ii~l~G~~GsGKsTl~~~L~~ 23 (180)
T TIGR03263 2 LLIVISGPSGVGKSTLVKALLE 23 (180)
T ss_pred cEEEEECCCCCCHHHHHHHHHc
Confidence 4789999999999999999988
No 97
>cd01672 TMPK Thymidine monophosphate kinase (TMPK), also known as thymidylate kinase, catalyzes the phosphorylation of thymidine monophosphate (TMP) to thymidine diphosphate (TDP) utilizing ATP as its preferred phophoryl donor. TMPK represents the rate-limiting step in either de novo or salvage biosynthesis of thymidine triphosphate (TTP).
Probab=96.22 E-value=0.0098 Score=49.58 Aligned_cols=22 Identities=14% Similarity=0.058 Sum_probs=20.2
Q ss_pred EEEEEcCCCCChhHHHHHHhcc
Q 047336 184 VVAILDSIGLDKTAFTAEAYNS 205 (290)
Q Consensus 184 Vi~IvGmgGiGKTTLa~~vy~d 205 (290)
+|+|.|+.|+||||+++.+.+.
T Consensus 2 ~I~ieG~~GsGKtT~~~~L~~~ 23 (200)
T cd01672 2 FIVFEGIDGAGKTTLIELLAER 23 (200)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999999873
No 98
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=96.22 E-value=0.012 Score=59.12 Aligned_cols=45 Identities=18% Similarity=0.166 Sum_probs=35.6
Q ss_pred CcccccchhHHHHHHHHhcCCCCcEEEEEEcCCCCChhHHHHHHhc
Q 047336 159 RNTVGLDDRMEELLDLLIEGPTQLSVVAILDSIGLDKTAFTAEAYN 204 (290)
Q Consensus 159 ~~~vG~e~~~~~L~~~L~~~~~~~~Vi~IvGmgGiGKTTLa~~vy~ 204 (290)
+++||.+..++.|.+++..+.- ...+-++|..|+||||+|+.+-+
T Consensus 16 dEVIGQe~Vv~~L~~aL~~gRL-~HAyLFtGPpGvGKTTlAriLAK 60 (830)
T PRK07003 16 ASLVGQEHVVRALTHALDGGRL-HHAYLFTGTRGVGKTTLSRIFAK 60 (830)
T ss_pred HHHcCcHHHHHHHHHHHhcCCC-CeEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999886542 22334899999999999886654
No 99
>PRK13975 thymidylate kinase; Provisional
Probab=96.21 E-value=0.0089 Score=50.12 Aligned_cols=23 Identities=13% Similarity=-0.006 Sum_probs=21.0
Q ss_pred EEEEEEcCCCCChhHHHHHHhcc
Q 047336 183 SVVAILDSIGLDKTAFTAEAYNS 205 (290)
Q Consensus 183 ~Vi~IvGmgGiGKTTLa~~vy~d 205 (290)
.+|.|.|+.|+||||+++.+.+.
T Consensus 3 ~~I~ieG~~GsGKtT~~~~L~~~ 25 (196)
T PRK13975 3 KFIVFEGIDGSGKTTQAKLLAEK 25 (196)
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 47999999999999999999983
No 100
>PRK06217 hypothetical protein; Validated
Probab=96.21 E-value=0.014 Score=48.65 Aligned_cols=36 Identities=19% Similarity=0.284 Sum_probs=26.0
Q ss_pred EEEEEEcCCCCChhHHHHHHhccccccccC--CeeEEEE
Q 047336 183 SVVAILDSIGLDKTAFTAEAYNSSYVKHYF--DYLAWIP 219 (290)
Q Consensus 183 ~Vi~IvGmgGiGKTTLa~~vy~d~~v~~~F--~~~~wV~ 219 (290)
..|.|.|++|+||||||+.+-..... .+| |...|-.
T Consensus 2 ~~I~i~G~~GsGKSTla~~L~~~l~~-~~~~~D~~~~~~ 39 (183)
T PRK06217 2 MRIHITGASGSGTTTLGAALAERLDI-PHLDTDDYFWLP 39 (183)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHcCC-cEEEcCceeecc
Confidence 35889999999999999999874433 233 4455643
No 101
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=96.19 E-value=0.0078 Score=54.07 Aligned_cols=24 Identities=13% Similarity=0.133 Sum_probs=21.1
Q ss_pred CCcEEEEEEcCCCCChhHHHHHHh
Q 047336 180 TQLSVVAILDSIGLDKTAFTAEAY 203 (290)
Q Consensus 180 ~~~~Vi~IvGmgGiGKTTLa~~vy 203 (290)
....+|||.|..|+||||||+.+-
T Consensus 60 ~~p~IIGIaG~~GSGKSTlar~L~ 83 (290)
T TIGR00554 60 KIPYIISIAGSVAVGKSTTARILQ 83 (290)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHH
Confidence 567899999999999999998663
No 102
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=96.19 E-value=0.0038 Score=51.69 Aligned_cols=23 Identities=13% Similarity=0.193 Sum_probs=20.2
Q ss_pred EEEEEEcCCCCChhHHHHHHhcc
Q 047336 183 SVVAILDSIGLDKTAFTAEAYNS 205 (290)
Q Consensus 183 ~Vi~IvGmgGiGKTTLa~~vy~d 205 (290)
.++.|+|+.|+|||||++.+...
T Consensus 2 ~~~~i~G~sGsGKttl~~~l~~~ 24 (179)
T TIGR02322 2 RLIYVVGPSGAGKDTLLDYARAR 24 (179)
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 37899999999999999998663
No 103
>PRK12377 putative replication protein; Provisional
Probab=96.19 E-value=0.027 Score=49.52 Aligned_cols=38 Identities=13% Similarity=0.035 Sum_probs=29.1
Q ss_pred cEEEEEEcCCCCChhHHHHHHhccccccccCCeeEEEECC
Q 047336 182 LSVVAILDSIGLDKTAFTAEAYNSSYVKHYFDYLAWIPAP 221 (290)
Q Consensus 182 ~~Vi~IvGmgGiGKTTLa~~vy~d~~v~~~F~~~~wV~vs 221 (290)
...+-++|..|+|||+||..+.+ .+....-.+++++++
T Consensus 101 ~~~l~l~G~~GtGKThLa~AIa~--~l~~~g~~v~~i~~~ 138 (248)
T PRK12377 101 CTNFVFSGKPGTGKNHLAAAIGN--RLLAKGRSVIVVTVP 138 (248)
T ss_pred CCeEEEECCCCCCHHHHHHHHHH--HHHHcCCCeEEEEHH
Confidence 45788999999999999999999 444444446777654
No 104
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=96.18 E-value=0.018 Score=49.19 Aligned_cols=49 Identities=16% Similarity=0.060 Sum_probs=32.9
Q ss_pred HhcCCCCcEEEEEEcCCCCChhHHHHHHhccccccccCCeeEEEECCCCCC
Q 047336 175 LIEGPTQLSVVAILDSIGLDKTAFTAEAYNSSYVKHYFDYLAWIPAPYQYD 225 (290)
Q Consensus 175 L~~~~~~~~Vi~IvGmgGiGKTTLa~~vy~d~~v~~~F~~~~wV~vs~~~~ 225 (290)
|..+=..-.++-|.|.+|+|||||+.++... ....=..++|++....++
T Consensus 12 l~GGi~~g~i~~i~G~~GsGKT~l~~~~a~~--~~~~g~~v~yi~~e~~~~ 60 (218)
T cd01394 12 LGGGVERGTVTQVYGPPGTGKTNIAIQLAVE--TAGQGKKVAYIDTEGLSS 60 (218)
T ss_pred hcCCccCCeEEEEECCCCCCHHHHHHHHHHH--HHhcCCeEEEEECCCCCH
Confidence 3334456789999999999999999887652 222223466776655443
No 105
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=96.18 E-value=0.005 Score=49.30 Aligned_cols=40 Identities=8% Similarity=0.136 Sum_probs=28.8
Q ss_pred EEEEEcCCCCChhHHHHHHhccccccccCCeeEEEECCCCCC
Q 047336 184 VVAILDSIGLDKTAFTAEAYNSSYVKHYFDYLAWIPAPYQYD 225 (290)
Q Consensus 184 Vi~IvGmgGiGKTTLa~~vy~d~~v~~~F~~~~wV~vs~~~~ 225 (290)
++.|.|.+|+||||+++.+.. .....-..++|++....++
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~--~~~~~~~~v~~~~~e~~~~ 40 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLAL--NIATKGGKVVYVDIEEEIE 40 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHH--HHHhcCCEEEEEECCcchH
Confidence 467999999999999999877 3333345567777665543
No 106
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=96.16 E-value=0.008 Score=47.59 Aligned_cols=41 Identities=15% Similarity=0.151 Sum_probs=30.0
Q ss_pred hhHHHHHHHHhcCCCCcEEEEEEcCCCCChhHHHHHHhccc
Q 047336 166 DRMEELLDLLIEGPTQLSVVAILDSIGLDKTAFTAEAYNSS 206 (290)
Q Consensus 166 ~~~~~L~~~L~~~~~~~~Vi~IvGmgGiGKTTLa~~vy~d~ 206 (290)
++..++.+.|...-..-.+|.+.|.-|.|||||++.+....
T Consensus 6 ~~t~~l~~~l~~~l~~~~~i~l~G~lGaGKTtl~~~l~~~l 46 (133)
T TIGR00150 6 KAMDKFGKAFAKPLDFGTVVLLKGDLGAGKTTLVQGLLQGL 46 (133)
T ss_pred HHHHHHHHHHHHhCCCCCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 34555666555432335589999999999999999999844
No 107
>PHA00729 NTP-binding motif containing protein
Probab=96.16 E-value=0.0075 Score=52.05 Aligned_cols=23 Identities=17% Similarity=0.281 Sum_probs=20.7
Q ss_pred cEEEEEEcCCCCChhHHHHHHhc
Q 047336 182 LSVVAILDSIGLDKTAFTAEAYN 204 (290)
Q Consensus 182 ~~Vi~IvGmgGiGKTTLa~~vy~ 204 (290)
...|.|.|.+|+||||||..+-+
T Consensus 17 f~nIlItG~pGvGKT~LA~aLa~ 39 (226)
T PHA00729 17 FVSAVIFGKQGSGKTTYALKVAR 39 (226)
T ss_pred eEEEEEECCCCCCHHHHHHHHHH
Confidence 55788999999999999999877
No 108
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=96.12 E-value=0.0047 Score=47.17 Aligned_cols=23 Identities=17% Similarity=0.436 Sum_probs=19.7
Q ss_pred EEEEcCCCCChhHHHHHHhcccc
Q 047336 185 VAILDSIGLDKTAFTAEAYNSSY 207 (290)
Q Consensus 185 i~IvGmgGiGKTTLa~~vy~d~~ 207 (290)
|.|+|..|+|||||.+.+.+.+.
T Consensus 2 I~V~G~~g~GKTsLi~~l~~~~~ 24 (119)
T PF08477_consen 2 IVVLGDSGVGKTSLIRRLCGGEF 24 (119)
T ss_dssp EEEECSTTSSHHHHHHHHHHSS-
T ss_pred EEEECcCCCCHHHHHHHHhcCCC
Confidence 68999999999999999887543
No 109
>PRK00625 shikimate kinase; Provisional
Probab=96.12 E-value=0.004 Score=51.67 Aligned_cols=21 Identities=14% Similarity=0.105 Sum_probs=18.8
Q ss_pred EEEEEcCCCCChhHHHHHHhc
Q 047336 184 VVAILDSIGLDKTAFTAEAYN 204 (290)
Q Consensus 184 Vi~IvGmgGiGKTTLa~~vy~ 204 (290)
.|.++||+|+||||+++.+-+
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~ 22 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAK 22 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 378999999999999999866
No 110
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=96.12 E-value=0.031 Score=46.10 Aligned_cols=43 Identities=21% Similarity=0.281 Sum_probs=32.8
Q ss_pred ccccchhHHHHHHHHhc-CCCCcEEEEEEcCCCCChhHHHHHHhc
Q 047336 161 TVGLDDRMEELLDLLIE-GPTQLSVVAILDSIGLDKTAFTAEAYN 204 (290)
Q Consensus 161 ~vG~e~~~~~L~~~L~~-~~~~~~Vi~IvGmgGiGKTTLa~~vy~ 204 (290)
+||....+.++.+.+.. .....+|+ |+|-.|+||+.+|+.+++
T Consensus 1 liG~s~~m~~~~~~~~~~a~~~~pVl-I~GE~GtGK~~lA~~IH~ 44 (168)
T PF00158_consen 1 LIGESPAMKRLREQAKRAASSDLPVL-ITGETGTGKELLARAIHN 44 (168)
T ss_dssp SS--SHHHHHHHHHHHHHTTSTS-EE-EECSTTSSHHHHHHHHHH
T ss_pred CEeCCHHHHHHHHHHHHHhCCCCCEE-EEcCCCCcHHHHHHHHHH
Confidence 57888888899888875 22335555 999999999999999999
No 111
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=96.11 E-value=0.0035 Score=51.97 Aligned_cols=21 Identities=29% Similarity=0.260 Sum_probs=19.2
Q ss_pred EEEEEcCCCCChhHHHHHHhc
Q 047336 184 VVAILDSIGLDKTAFTAEAYN 204 (290)
Q Consensus 184 Vi~IvGmgGiGKTTLa~~vy~ 204 (290)
||.|+|++|+||||+|+.+..
T Consensus 1 ~i~i~G~pGsGKst~a~~la~ 21 (183)
T TIGR01359 1 VVFVLGGPGSGKGTQCAKIVE 21 (183)
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 578999999999999999876
No 112
>CHL00181 cbbX CbbX; Provisional
Probab=96.11 E-value=0.009 Score=53.66 Aligned_cols=46 Identities=17% Similarity=0.201 Sum_probs=32.3
Q ss_pred CcccccchhHHHHHHHH---hc-------C--C-CCcEEEEEEcCCCCChhHHHHHHhc
Q 047336 159 RNTVGLDDRMEELLDLL---IE-------G--P-TQLSVVAILDSIGLDKTAFTAEAYN 204 (290)
Q Consensus 159 ~~~vG~e~~~~~L~~~L---~~-------~--~-~~~~Vi~IvGmgGiGKTTLa~~vy~ 204 (290)
.+++|.+..+++|.++. .- + . .....+-++|.+|+||||+|+.+.+
T Consensus 23 ~~l~Gl~~vK~~i~e~~~~~~~~~~~~~~g~~~~~~~~~ill~G~pGtGKT~lAr~la~ 81 (287)
T CHL00181 23 EELVGLAPVKTRIREIAALLLIDRLRKNLGLTSSNPGLHMSFTGSPGTGKTTVALKMAD 81 (287)
T ss_pred HhcCCcHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHH
Confidence 35899888888665543 21 1 1 1233477899999999999999966
No 113
>PRK00131 aroK shikimate kinase; Reviewed
Probab=96.10 E-value=0.0047 Score=50.47 Aligned_cols=24 Identities=8% Similarity=0.098 Sum_probs=21.3
Q ss_pred cEEEEEEcCCCCChhHHHHHHhcc
Q 047336 182 LSVVAILDSIGLDKTAFTAEAYNS 205 (290)
Q Consensus 182 ~~Vi~IvGmgGiGKTTLa~~vy~d 205 (290)
...|.++|++|+||||+|+.+...
T Consensus 4 ~~~i~l~G~~GsGKstla~~La~~ 27 (175)
T PRK00131 4 GPNIVLIGFMGAGKSTIGRLLAKR 27 (175)
T ss_pred CCeEEEEcCCCCCHHHHHHHHHHH
Confidence 458899999999999999999873
No 114
>COG1428 Deoxynucleoside kinases [Nucleotide transport and metabolism]
Probab=96.09 E-value=0.0042 Score=52.68 Aligned_cols=25 Identities=20% Similarity=0.219 Sum_probs=22.3
Q ss_pred cEEEEEEcCCCCChhHHHHHHhccc
Q 047336 182 LSVVAILDSIGLDKTAFTAEAYNSS 206 (290)
Q Consensus 182 ~~Vi~IvGmgGiGKTTLa~~vy~d~ 206 (290)
..+|+|-||-|+||||||+.+-+.-
T Consensus 4 ~~~IvI~G~IG~GKSTLa~~La~~l 28 (216)
T COG1428 4 AMVIVIEGMIGAGKSTLAQALAEHL 28 (216)
T ss_pred ccEEEEecccccCHHHHHHHHHHHh
Confidence 5789999999999999999998844
No 115
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=96.08 E-value=0.019 Score=54.01 Aligned_cols=77 Identities=13% Similarity=0.197 Sum_probs=49.4
Q ss_pred CcccccchhHHHHHHHHhcC------------CCCcEEEEEEcCCCCChhHHHHHHhccccccccC---CeeEEEECCC-
Q 047336 159 RNTVGLDDRMEELLDLLIEG------------PTQLSVVAILDSIGLDKTAFTAEAYNSSYVKHYF---DYLAWIPAPY- 222 (290)
Q Consensus 159 ~~~vG~e~~~~~L~~~L~~~------------~~~~~Vi~IvGmgGiGKTTLa~~vy~d~~v~~~F---~~~~wV~vs~- 222 (290)
..++|.++.++.+.-.+... +...+-|-++|++|+||||||+.+-. .....| +..-++..+.
T Consensus 12 ~~IiGQ~eAkk~lsvAl~n~~~r~~~~~~~~~e~~p~~ILLiGppG~GKT~lAraLA~--~l~~~fi~vdat~~~e~g~v 89 (441)
T TIGR00390 12 KYIIGQDNAKKSVAIALRNRYRRSQLNEELKDEVTPKNILMIGPTGVGKTEIARRLAK--LANAPFIKVEATKFTEVGYV 89 (441)
T ss_pred hhccCHHHHHHHHHHHHHhhhhhhccccccccccCCceEEEECCCCCCHHHHHHHHHH--HhCCeEEEeecceeecCCcc
Confidence 45899999999887666531 12346788999999999999999987 333333 2222222222
Q ss_pred CCCHHHHHHHHHHHh
Q 047336 223 QYDPDQILDTVTWLS 237 (290)
Q Consensus 223 ~~~~~~ll~~Il~~l 237 (290)
..+...+++.+....
T Consensus 90 G~dvE~i~r~l~e~A 104 (441)
T TIGR00390 90 GRDVESMVRDLTDAA 104 (441)
T ss_pred cCCHHHHHHHHHHHH
Confidence 225667776665544
No 116
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.07 E-value=0.0075 Score=57.93 Aligned_cols=45 Identities=16% Similarity=0.136 Sum_probs=35.4
Q ss_pred CcccccchhHHHHHHHHhcCCCCcEEEEEEcCCCCChhHHHHHHhc
Q 047336 159 RNTVGLDDRMEELLDLLIEGPTQLSVVAILDSIGLDKTAFTAEAYN 204 (290)
Q Consensus 159 ~~~vG~e~~~~~L~~~L~~~~~~~~Vi~IvGmgGiGKTTLa~~vy~ 204 (290)
++++|.+.....|.+.+..+. -...+-++|++|+||||+|+.+.+
T Consensus 14 ~divGq~~i~~~L~~~i~~~~-l~~~~Lf~GPpGtGKTTlA~~lA~ 58 (472)
T PRK14962 14 SEVVGQDHVKKLIINALKKNS-ISHAYIFAGPRGTGKTTVARILAK 58 (472)
T ss_pred HHccCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHH
Confidence 468999888888877776543 224567899999999999998865
No 117
>PRK00889 adenylylsulfate kinase; Provisional
Probab=96.07 E-value=0.0056 Score=50.56 Aligned_cols=25 Identities=16% Similarity=0.032 Sum_probs=22.0
Q ss_pred CcEEEEEEcCCCCChhHHHHHHhcc
Q 047336 181 QLSVVAILDSIGLDKTAFTAEAYNS 205 (290)
Q Consensus 181 ~~~Vi~IvGmgGiGKTTLa~~vy~d 205 (290)
.-.+|.|+|++|+||||+|+.+...
T Consensus 3 ~g~~i~~~G~~GsGKST~a~~la~~ 27 (175)
T PRK00889 3 RGVTVWFTGLSGAGKTTIARALAEK 27 (175)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3569999999999999999998873
No 118
>PRK00300 gmk guanylate kinase; Provisional
Probab=96.07 E-value=0.0044 Score=52.41 Aligned_cols=24 Identities=8% Similarity=0.138 Sum_probs=21.7
Q ss_pred cEEEEEEcCCCCChhHHHHHHhcc
Q 047336 182 LSVVAILDSIGLDKTAFTAEAYNS 205 (290)
Q Consensus 182 ~~Vi~IvGmgGiGKTTLa~~vy~d 205 (290)
-.+|+|+|+.|+|||||++.+...
T Consensus 5 g~~i~i~G~sGsGKstl~~~l~~~ 28 (205)
T PRK00300 5 GLLIVLSGPSGAGKSTLVKALLER 28 (205)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhh
Confidence 468999999999999999999873
No 119
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=96.06 E-value=0.0043 Score=50.94 Aligned_cols=20 Identities=25% Similarity=0.288 Sum_probs=18.4
Q ss_pred EEEEEcCCCCChhHHHHHHh
Q 047336 184 VVAILDSIGLDKTAFTAEAY 203 (290)
Q Consensus 184 Vi~IvGmgGiGKTTLa~~vy 203 (290)
.|+|.|.+|+||||+++.+-
T Consensus 2 ~I~ITGTPGvGKTT~~~~L~ 21 (180)
T COG1936 2 LIAITGTPGVGKTTVCKLLR 21 (180)
T ss_pred eEEEeCCCCCchHHHHHHHH
Confidence 58999999999999999885
No 120
>PRK08116 hypothetical protein; Validated
Probab=96.06 E-value=0.025 Score=50.31 Aligned_cols=46 Identities=17% Similarity=0.083 Sum_probs=31.7
Q ss_pred EEEEEcCCCCChhHHHHHHhccccccccCCeeEEEECCCCCCHHHHHHHHHHHh
Q 047336 184 VVAILDSIGLDKTAFTAEAYNSSYVKHYFDYLAWIPAPYQYDPDQILDTVTWLS 237 (290)
Q Consensus 184 Vi~IvGmgGiGKTTLa~~vy~d~~v~~~F~~~~wV~vs~~~~~~~ll~~Il~~l 237 (290)
-+-++|..|+|||.||..+++ .+..+-...++++ ..+++..|....
T Consensus 116 gl~l~G~~GtGKThLa~aia~--~l~~~~~~v~~~~------~~~ll~~i~~~~ 161 (268)
T PRK08116 116 GLLLWGSVGTGKTYLAACIAN--ELIEKGVPVIFVN------FPQLLNRIKSTY 161 (268)
T ss_pred eEEEECCCCCCHHHHHHHHHH--HHHHcCCeEEEEE------HHHHHHHHHHHH
Confidence 467999999999999999999 4433333456665 345555554443
No 121
>cd01133 F1-ATPase_beta F1 ATP synthase beta subunit, nucleotide-binding domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The beta subunit of ATP synthase is catalytic.
Probab=96.05 E-value=0.0085 Score=53.24 Aligned_cols=52 Identities=12% Similarity=0.173 Sum_probs=38.9
Q ss_pred cEEEEEEcCCCCChhHHHHHHhccccccccCC-eeEEEECCCCCC-HHHHHHHHHH
Q 047336 182 LSVVAILDSIGLDKTAFTAEAYNSSYVKHYFD-YLAWIPAPYQYD-PDQILDTVTW 235 (290)
Q Consensus 182 ~~Vi~IvGmgGiGKTTLa~~vy~d~~v~~~F~-~~~wV~vs~~~~-~~~ll~~Il~ 235 (290)
=.-++|+|..|+|||||++.+++ .++.+|. .++++-+.+..+ +.++..++..
T Consensus 69 GQr~~If~~~G~GKTtLa~~i~~--~i~~~~~~~~V~~~iGer~~Ev~e~~~~~~~ 122 (274)
T cd01133 69 GGKIGLFGGAGVGKTVLIMELIN--NIAKAHGGYSVFAGVGERTREGNDLYHEMKE 122 (274)
T ss_pred CCEEEEecCCCCChhHHHHHHHH--HHHhcCCCEEEEEEeccCcHHHHHHHHHHHh
Confidence 46789999999999999999999 5555554 467777777664 4566666654
No 122
>PF07693 KAP_NTPase: KAP family P-loop domain; InterPro: IPR011646 The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals. Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side [].
Probab=96.04 E-value=0.015 Score=52.66 Aligned_cols=76 Identities=11% Similarity=0.058 Sum_probs=50.8
Q ss_pred chhHHHHHHHHhcCC-CCcEEEEEEcCCCCChhHHHHHHhcccccc--cc---CCeeEEEECCCCCCHHHHHHHHHHHhh
Q 047336 165 DDRMEELLDLLIEGP-TQLSVVAILDSIGLDKTAFTAEAYNSSYVK--HY---FDYLAWIPAPYQYDPDQILDTVTWLSR 238 (290)
Q Consensus 165 e~~~~~L~~~L~~~~-~~~~Vi~IvGmgGiGKTTLa~~vy~d~~v~--~~---F~~~~wV~vs~~~~~~~ll~~Il~~l~ 238 (290)
+.-.+.|.+.|...+ ....+|+|.|.-|+||||+.+.+.+..+-. .. +..-+|-.-..+--...++..|..++.
T Consensus 2 ~~~a~~la~~I~~~~~~~~~~IgL~G~WGsGKSs~l~~l~~~L~~~~~~~~~~i~fn~w~~~~~~~~~~~~~~~l~~~l~ 81 (325)
T PF07693_consen 2 KPYAKALAEIIKNPDSDDPFVIGLYGEWGSGKSSFLNMLKEELKEDNKEKYIFIYFNAWEYDGEDDLWASFLEELFDQLE 81 (325)
T ss_pred hHHHHHHHHHHhccCCCCCeEEEEECCCCCCHHHHHHHHHHHHhcccccceeeEEEccccCCCcchHHHHHHHHHHHHHH
Confidence 345677888887643 678999999999999999999998843222 01 123455554433335567777777776
Q ss_pred hc
Q 047336 239 RN 240 (290)
Q Consensus 239 ~~ 240 (290)
..
T Consensus 82 ~~ 83 (325)
T PF07693_consen 82 KH 83 (325)
T ss_pred Hh
Confidence 54
No 123
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=96.04 E-value=0.0074 Score=52.60 Aligned_cols=37 Identities=24% Similarity=0.354 Sum_probs=29.8
Q ss_pred cEEEEEEcCCCCChhHHHHHHhccccccccCCeeEEEEC
Q 047336 182 LSVVAILDSIGLDKTAFTAEAYNSSYVKHYFDYLAWIPA 220 (290)
Q Consensus 182 ~~Vi~IvGmgGiGKTTLa~~vy~d~~v~~~F~~~~wV~v 220 (290)
.-.++|+|..|+|||||+..+.. ...+.|.+..+++-
T Consensus 13 ~fr~viIG~sGSGKT~li~~lL~--~~~~~f~~I~l~t~ 49 (241)
T PF04665_consen 13 PFRMVIIGKSGSGKTTLIKSLLY--YLRHKFDHIFLITP 49 (241)
T ss_pred CceEEEECCCCCCHHHHHHHHHH--hhcccCCEEEEEec
Confidence 34678999999999999999887 46778877776654
No 124
>PF00625 Guanylate_kin: Guanylate kinase; InterPro: IPR008144 Guanylate kinase (2.7.4.8 from EC) (GK) [] catalyzes the ATP-dependent phosphorylation of GMP into GDP. It is essential for recycling GMP and indirectly, cGMP. In prokaryotes (such as Escherichia coli), lower eukaryotes (such as yeast) and in vertebrates, GK is a highly conserved monomeric protein of about 200 amino acids. GK has been shown [, , ] to be structurally similar to protein A57R (or SalG2R) from various strains of Vaccinia virus. Proteins containing one or more copies of the DHR domain, an SH3 domain as well as a C-terminal GK-like domain, are collectively termed MAGUKs (membrane-associated guanylate kinase homologs) [], and include Drosophila lethal(1)discs large-1 tumor suppressor protein (gene dlg1); mammalian tight junction protein Zo-1; a family of mammalian synaptic proteins that seem to interact with the cytoplasmic tail of NMDA receptor subunits (SAP90/PSD-95, CHAPSYN-110/PSD-93, SAP97/DLG1 and SAP102); vertebrate 55kDa erythrocyte membrane protein (p55); Caenorhabditis elegans protein lin-2; rat protein CASK; and human proteins DLG2 and DLG3. There is an ATP-binding site (P-loop) in the N-terminal section of GK, which is not conserved in the GK-like domain of the above proteins. However these proteins retain the residues known, in GK, to be involved in the binding of GMP.; GO: 0005515 protein binding; PDB: 3UAT_A 3KFV_A 2ANC_F 2F3T_E 2ANB_A 2AN9_A 1S96_A 2F3R_B 3TR0_A 1LVG_A ....
Probab=96.04 E-value=0.0071 Score=50.39 Aligned_cols=37 Identities=8% Similarity=0.102 Sum_probs=29.8
Q ss_pred cEEEEEEcCCCCChhHHHHHHhccccccccCCeeEEEEC
Q 047336 182 LSVVAILDSIGLDKTAFTAEAYNSSYVKHYFDYLAWIPA 220 (290)
Q Consensus 182 ~~Vi~IvGmgGiGKTTLa~~vy~d~~v~~~F~~~~wV~v 220 (290)
.++|.|+|+.|+|||||++.+.. ....+|...++-|-
T Consensus 2 ~r~ivl~Gpsg~GK~~l~~~L~~--~~~~~~~~~v~~TT 38 (183)
T PF00625_consen 2 RRPIVLVGPSGSGKSTLAKRLIQ--EFPDKFGRVVSHTT 38 (183)
T ss_dssp SSEEEEESSTTSSHHHHHHHHHH--HSTTTEEEEEEEES
T ss_pred CCEEEEECCCCCCHHHHHHHHHH--hcccccccceeecc
Confidence 46788999999999999999998 44567866666654
No 125
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.03 E-value=0.0094 Score=55.36 Aligned_cols=45 Identities=16% Similarity=0.155 Sum_probs=37.0
Q ss_pred CcccccchhHHHHHHHHhcCCCCcEEEEEEcCCCCChhHHHHHHhc
Q 047336 159 RNTVGLDDRMEELLDLLIEGPTQLSVVAILDSIGLDKTAFTAEAYN 204 (290)
Q Consensus 159 ~~~vG~e~~~~~L~~~L~~~~~~~~Vi~IvGmgGiGKTTLa~~vy~ 204 (290)
.+++|.+...+.|.+.+..+. -...+-++|+.|+||||+|+.+.+
T Consensus 16 ~~iiGq~~~~~~l~~~~~~~~-~~h~~L~~Gp~G~GKTtla~~la~ 60 (363)
T PRK14961 16 RDIIGQKHIVTAISNGLSLGR-IHHAWLLSGTRGVGKTTIARLLAK 60 (363)
T ss_pred hhccChHHHHHHHHHHHHcCC-CCeEEEEecCCCCCHHHHHHHHHH
Confidence 468999999999999887653 234567899999999999998876
No 126
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.02 E-value=0.021 Score=58.39 Aligned_cols=45 Identities=18% Similarity=0.221 Sum_probs=37.3
Q ss_pred CcccccchhHHHHHHHHhcCCCCcE-EEEEEcCCCCChhHHHHHHhcc
Q 047336 159 RNTVGLDDRMEELLDLLIEGPTQLS-VVAILDSIGLDKTAFTAEAYNS 205 (290)
Q Consensus 159 ~~~vG~e~~~~~L~~~L~~~~~~~~-Vi~IvGmgGiGKTTLa~~vy~d 205 (290)
.++||.+.-++.|.+++..+. +. .+-++|+.|+||||+|+.+.+.
T Consensus 16 ddIIGQe~Iv~~LknaI~~~r--l~HAyLFtGPpGtGKTTLARiLAk~ 61 (944)
T PRK14949 16 EQMVGQSHVLHALTNALTQQR--LHHAYLFTGTRGVGKTSLARLFAKG 61 (944)
T ss_pred HHhcCcHHHHHHHHHHHHhCC--CCeEEEEECCCCCCHHHHHHHHHHh
Confidence 468999999999999987653 43 3468999999999999998873
No 127
>PRK03846 adenylylsulfate kinase; Provisional
Probab=96.01 E-value=0.0063 Score=51.46 Aligned_cols=25 Identities=12% Similarity=0.021 Sum_probs=22.8
Q ss_pred CCcEEEEEEcCCCCChhHHHHHHhc
Q 047336 180 TQLSVVAILDSIGLDKTAFTAEAYN 204 (290)
Q Consensus 180 ~~~~Vi~IvGmgGiGKTTLa~~vy~ 204 (290)
.+..+|.|+|+.|+||||||+.+..
T Consensus 22 ~~~~~i~i~G~~GsGKSTla~~l~~ 46 (198)
T PRK03846 22 HKGVVLWFTGLSGSGKSTVAGALEE 46 (198)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 4578999999999999999999977
No 128
>TIGR00176 mobB molybdopterin-guanine dinucleotide biosynthesis protein MobB. This molybdenum cofactor biosynthesis enzyme is similar to the urease accessory protein UreG and to the hydrogenase accessory protein HypB, both GTP hydrolases involved in loading nickel into the metallocenters of their respective target enzymes.
Probab=96.00 E-value=0.0062 Score=49.56 Aligned_cols=38 Identities=13% Similarity=0.069 Sum_probs=26.7
Q ss_pred EEEEEcCCCCChhHHHHHHhccccccc-cCCeeEEEECCCC
Q 047336 184 VVAILDSIGLDKTAFTAEAYNSSYVKH-YFDYLAWIPAPYQ 223 (290)
Q Consensus 184 Vi~IvGmgGiGKTTLa~~vy~d~~v~~-~F~~~~wV~vs~~ 223 (290)
|++|+|+.|+|||||+..+.. ..+. .+...+.-+....
T Consensus 1 vi~i~G~~gsGKTtl~~~l~~--~l~~~G~~V~viK~~~~~ 39 (155)
T TIGR00176 1 VLQIVGPKNSGKTTLIERLVK--ALKARGYRVATIKHDHHD 39 (155)
T ss_pred CEEEECCCCCCHHHHHHHHHH--HHHhcCCeEEEEeccccc
Confidence 589999999999999999988 3333 2544444444333
No 129
>PRK06893 DNA replication initiation factor; Validated
Probab=95.99 E-value=0.005 Score=53.37 Aligned_cols=38 Identities=13% Similarity=0.042 Sum_probs=28.3
Q ss_pred cEEEEEEcCCCCChhHHHHHHhccccccccCCeeEEEECC
Q 047336 182 LSVVAILDSIGLDKTAFTAEAYNSSYVKHYFDYLAWIPAP 221 (290)
Q Consensus 182 ~~Vi~IvGmgGiGKTTLa~~vy~d~~v~~~F~~~~wV~vs 221 (290)
-+.+-++|+.|+|||+|++.+.+. .........+++++
T Consensus 39 ~~~l~l~G~~G~GKThL~~ai~~~--~~~~~~~~~y~~~~ 76 (229)
T PRK06893 39 QPFFYIWGGKSSGKSHLLKAVSNH--YLLNQRTAIYIPLS 76 (229)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH--HHHcCCCeEEeeHH
Confidence 456889999999999999999983 33333345677664
No 130
>PRK05439 pantothenate kinase; Provisional
Probab=95.98 E-value=0.012 Score=53.45 Aligned_cols=26 Identities=12% Similarity=0.101 Sum_probs=22.9
Q ss_pred CCCcEEEEEEcCCCCChhHHHHHHhc
Q 047336 179 PTQLSVVAILDSIGLDKTAFTAEAYN 204 (290)
Q Consensus 179 ~~~~~Vi~IvGmgGiGKTTLa~~vy~ 204 (290)
....-+|+|.|.+|+||||+|+.+..
T Consensus 83 ~~~~~iIgIaG~~gsGKSTla~~L~~ 108 (311)
T PRK05439 83 QKVPFIIGIAGSVAVGKSTTARLLQA 108 (311)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHH
Confidence 35678999999999999999998865
No 131
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=95.98 E-value=0.05 Score=51.25 Aligned_cols=24 Identities=25% Similarity=0.292 Sum_probs=21.3
Q ss_pred cEEEEEEcCCCCChhHHHHHHhcc
Q 047336 182 LSVVAILDSIGLDKTAFTAEAYNS 205 (290)
Q Consensus 182 ~~Vi~IvGmgGiGKTTLa~~vy~d 205 (290)
...+-|+|..|+|||+|++.+.+.
T Consensus 136 ~n~l~l~G~~G~GKThL~~ai~~~ 159 (405)
T TIGR00362 136 YNPLFIYGGVGLGKTHLLHAIGNE 159 (405)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHH
Confidence 456789999999999999999983
No 132
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=95.98 E-value=0.026 Score=52.45 Aligned_cols=23 Identities=30% Similarity=0.326 Sum_probs=20.7
Q ss_pred cEEEEEEcCCCCChhHHHHHHhc
Q 047336 182 LSVVAILDSIGLDKTAFTAEAYN 204 (290)
Q Consensus 182 ~~Vi~IvGmgGiGKTTLa~~vy~ 204 (290)
-.++.++|+.|+||||++.++-.
T Consensus 137 g~ii~lvGptGvGKTTtiakLA~ 159 (374)
T PRK14722 137 GGVFALMGPTGVGKTTTTAKLAA 159 (374)
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999988876
No 133
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=95.97 E-value=0.008 Score=61.97 Aligned_cols=44 Identities=16% Similarity=0.288 Sum_probs=36.2
Q ss_pred CcccccchhHHHHHHHHhcCCCCcEEEEEEcCCCCChhHHHHHHhc
Q 047336 159 RNTVGLDDRMEELLDLLIEGPTQLSVVAILDSIGLDKTAFTAEAYN 204 (290)
Q Consensus 159 ~~~vG~e~~~~~L~~~L~~~~~~~~Vi~IvGmgGiGKTTLa~~vy~ 204 (290)
..++|++.+.++++..|..... .-+-++|.+|+|||+||+.+..
T Consensus 173 ~~~igr~~ei~~~~~~l~r~~~--~n~lL~G~pGvGKT~l~~~la~ 216 (852)
T TIGR03346 173 DPVIGRDEEIRRTIQVLSRRTK--NNPVLIGEPGVGKTAIVEGLAQ 216 (852)
T ss_pred CcCCCcHHHHHHHHHHHhcCCC--CceEEEcCCCCCHHHHHHHHHH
Confidence 4599999999999999987542 2334799999999999998776
No 134
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=95.95 E-value=0.0057 Score=48.63 Aligned_cols=22 Identities=9% Similarity=0.286 Sum_probs=19.8
Q ss_pred EEEEEcCCCCChhHHHHHHhcc
Q 047336 184 VVAILDSIGLDKTAFTAEAYNS 205 (290)
Q Consensus 184 Vi~IvGmgGiGKTTLa~~vy~d 205 (290)
.|.|+|+.|+|||||++.+...
T Consensus 1 ~i~i~GpsGsGKstl~~~L~~~ 22 (137)
T cd00071 1 LIVLSGPSGVGKSTLLKRLLEE 22 (137)
T ss_pred CEEEECCCCCCHHHHHHHHHhc
Confidence 3789999999999999999873
No 135
>PRK04301 radA DNA repair and recombination protein RadA; Validated
Probab=95.95 E-value=0.027 Score=51.32 Aligned_cols=60 Identities=17% Similarity=0.188 Sum_probs=42.2
Q ss_pred HHHhcCCCCcEEEEEEcCCCCChhHHHHHHhccccccccC----CeeEEEECCCCCCHHHHHHH
Q 047336 173 DLLIEGPTQLSVVAILDSIGLDKTAFTAEAYNSSYVKHYF----DYLAWIPAPYQYDPDQILDT 232 (290)
Q Consensus 173 ~~L~~~~~~~~Vi~IvGmgGiGKTTLa~~vy~d~~v~~~F----~~~~wV~vs~~~~~~~ll~~ 232 (290)
+.|..+=+.-.++-|+|.+|+|||+|+.++.-+......+ ...+||+.-.+|++..+.+.
T Consensus 93 ~~l~GGi~~g~vtei~G~~GsGKT~l~~~~~~~~~~~~~~gg~~~~~~yi~te~~f~~~rl~~~ 156 (317)
T PRK04301 93 ELLGGGIETQSITEFYGEFGSGKTQICHQLAVNVQLPEEKGGLEGKAVYIDTEGTFRPERIEQM 156 (317)
T ss_pred HHhcCCccCCcEEEEECCCCCCHhHHHHHHHHHhccccccCCCCceEEEEeCCCCcCHHHHHHH
Confidence 3344444567899999999999999998776432221111 36899999998888776543
No 136
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=95.95 E-value=0.03 Score=47.15 Aligned_cols=27 Identities=11% Similarity=0.183 Sum_probs=23.1
Q ss_pred CCcEEEEEEcCCCCChhHHHHHHhccc
Q 047336 180 TQLSVVAILDSIGLDKTAFTAEAYNSS 206 (290)
Q Consensus 180 ~~~~Vi~IvGmgGiGKTTLa~~vy~d~ 206 (290)
+....|+|+|.+|+|||||.+.+.+..
T Consensus 39 ~~~~~I~iiG~~g~GKStLl~~l~~~~ 65 (204)
T cd01878 39 SGIPTVALVGYTNAGKSTLFNALTGAD 65 (204)
T ss_pred cCCCeEEEECCCCCCHHHHHHHHhcch
Confidence 346789999999999999999888753
No 137
>PRK14530 adenylate kinase; Provisional
Probab=95.91 E-value=0.0057 Score=52.38 Aligned_cols=21 Identities=14% Similarity=0.191 Sum_probs=19.2
Q ss_pred EEEEEcCCCCChhHHHHHHhc
Q 047336 184 VVAILDSIGLDKTAFTAEAYN 204 (290)
Q Consensus 184 Vi~IvGmgGiGKTTLa~~vy~ 204 (290)
.|.|+|++|+||||+|+.+..
T Consensus 5 ~I~i~G~pGsGKsT~~~~La~ 25 (215)
T PRK14530 5 RILLLGAPGAGKGTQSSNLAE 25 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 588999999999999999865
No 138
>PRK13947 shikimate kinase; Provisional
Probab=95.90 E-value=0.0057 Score=50.14 Aligned_cols=21 Identities=14% Similarity=0.248 Sum_probs=19.1
Q ss_pred EEEEEcCCCCChhHHHHHHhc
Q 047336 184 VVAILDSIGLDKTAFTAEAYN 204 (290)
Q Consensus 184 Vi~IvGmgGiGKTTLa~~vy~ 204 (290)
-|.|+||+|+||||+|+.+-+
T Consensus 3 ~I~l~G~~GsGKst~a~~La~ 23 (171)
T PRK13947 3 NIVLIGFMGTGKTTVGKRVAT 23 (171)
T ss_pred eEEEEcCCCCCHHHHHHHHHH
Confidence 478999999999999999876
No 139
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=95.90 E-value=0.0088 Score=60.95 Aligned_cols=47 Identities=15% Similarity=0.320 Sum_probs=39.7
Q ss_pred CCcccccchhHHHHHHHHhc----CCCCcEEEEEEcCCCCChhHHHHHHhc
Q 047336 158 NRNTVGLDDRMEELLDLLIE----GPTQLSVVAILDSIGLDKTAFTAEAYN 204 (290)
Q Consensus 158 ~~~~vG~e~~~~~L~~~L~~----~~~~~~Vi~IvGmgGiGKTTLa~~vy~ 204 (290)
+.+.+|.+..++.|+++|.. +..+-.++.++|++|+||||+|+.+..
T Consensus 321 ~~~~~g~~~vK~~i~~~l~~~~~~~~~~g~~i~l~GppG~GKTtl~~~ia~ 371 (784)
T PRK10787 321 DTDHYGLERVKDRILEYLAVQSRVNKIKGPILCLVGPPGVGKTSLGQSIAK 371 (784)
T ss_pred hhhccCHHHHHHHHHHHHHHHHhcccCCCceEEEECCCCCCHHHHHHHHHH
Confidence 35589999999999999873 223456899999999999999999987
No 140
>PRK08084 DNA replication initiation factor; Provisional
Probab=95.89 E-value=0.023 Score=49.50 Aligned_cols=23 Identities=9% Similarity=0.121 Sum_probs=20.8
Q ss_pred cEEEEEEcCCCCChhHHHHHHhc
Q 047336 182 LSVVAILDSIGLDKTAFTAEAYN 204 (290)
Q Consensus 182 ~~Vi~IvGmgGiGKTTLa~~vy~ 204 (290)
.+.+-|+|+.|+|||+|++.+.+
T Consensus 45 ~~~l~l~Gp~G~GKThLl~a~~~ 67 (235)
T PRK08084 45 SGYIYLWSREGAGRSHLLHAACA 67 (235)
T ss_pred CCeEEEECCCCCCHHHHHHHHHH
Confidence 45788999999999999999887
No 141
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=95.88 E-value=0.0092 Score=60.92 Aligned_cols=46 Identities=20% Similarity=0.355 Sum_probs=37.9
Q ss_pred CcccccchhHHHHHHHHhc----CCCCcEEEEEEcCCCCChhHHHHHHhc
Q 047336 159 RNTVGLDDRMEELLDLLIE----GPTQLSVVAILDSIGLDKTAFTAEAYN 204 (290)
Q Consensus 159 ~~~vG~e~~~~~L~~~L~~----~~~~~~Vi~IvGmgGiGKTTLa~~vy~ 204 (290)
.+++|.+..++.|.+++.. +..+-.++..+|++|+||||||+.+.+
T Consensus 320 ~~~~G~~~~k~~i~~~~~~~~~~~~~~~~~lll~GppG~GKT~lAk~iA~ 369 (775)
T TIGR00763 320 EDHYGLKKVKERILEYLAVQKLRGKMKGPILCLVGPPGVGKTSLGKSIAK 369 (775)
T ss_pred hhcCChHHHHHHHHHHHHHHHhhcCCCCceEEEECCCCCCHHHHHHHHHH
Confidence 4589999999999987752 233445899999999999999999988
No 142
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=95.88 E-value=0.0063 Score=53.59 Aligned_cols=57 Identities=16% Similarity=0.109 Sum_probs=36.6
Q ss_pred CCcEEEEEEcCCCCChhHHHHHHhccccccccCCeeEEE---------ECCCCCCHHHH--HHHHHHHhh
Q 047336 180 TQLSVVAILDSIGLDKTAFTAEAYNSSYVKHYFDYLAWI---------PAPYQYDPDQI--LDTVTWLSR 238 (290)
Q Consensus 180 ~~~~Vi~IvGmgGiGKTTLa~~vy~d~~v~~~F~~~~wV---------~vs~~~~~~~l--l~~Il~~l~ 238 (290)
.+...|-++||+|.||||..|.++.+. ...+.+---| ..+-+.|+++. .++.++|-.
T Consensus 17 ~~p~~ilVvGMAGSGKTTF~QrL~~hl--~~~~~ppYviNLDPAv~~vpy~aniDIRDtVkYkEvMkqY~ 84 (366)
T KOG1532|consen 17 QRPVIILVVGMAGSGKTTFMQRLNSHL--HAKKTPPYVINLDPAVRNVPYPANIDIRDTVKYKEVMKQYQ 84 (366)
T ss_pred cCCcEEEEEecCCCCchhHHHHHHHHH--hhccCCCeEEeCCHHHhcCCCccCCchhhhhhHHHHHHHhC
Confidence 456778889999999999999999843 3333322122 22345566664 567777654
No 143
>TIGR02236 recomb_radA DNA repair and recombination protein RadA. This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein.
Probab=95.87 E-value=0.033 Score=50.43 Aligned_cols=60 Identities=15% Similarity=0.254 Sum_probs=41.9
Q ss_pred HHHhcCCCCcEEEEEEcCCCCChhHHHHHHhccccccc----cCCeeEEEECCCCCCHHHHHHH
Q 047336 173 DLLIEGPTQLSVVAILDSIGLDKTAFTAEAYNSSYVKH----YFDYLAWIPAPYQYDPDQILDT 232 (290)
Q Consensus 173 ~~L~~~~~~~~Vi~IvGmgGiGKTTLa~~vy~d~~v~~----~F~~~~wV~vs~~~~~~~ll~~ 232 (290)
..|..+=..-.++-|+|.+|+|||||+..+.-+..... .=..++||+.-.+|+..++.+.
T Consensus 86 ~~l~GGi~~g~i~ei~G~~g~GKT~l~~~~~~~~~~~~~~g~~~~~~~yi~te~~f~~~rl~~~ 149 (310)
T TIGR02236 86 ELLGGGIETQAITEVFGEFGSGKTQICHQLAVNVQLPEEKGGLGGKAVYIDTENTFRPERIMQM 149 (310)
T ss_pred HHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCcccCCCcceEEEEECCCCCCHHHHHHH
Confidence 33444435678999999999999999988765322211 0127899999998988776543
No 144
>PLN02318 phosphoribulokinase/uridine kinase
Probab=95.86 E-value=0.011 Score=57.88 Aligned_cols=35 Identities=26% Similarity=0.330 Sum_probs=27.6
Q ss_pred HHHHHhcCCCCcEEEEEEcCCCCChhHHHHHHhcc
Q 047336 171 LLDLLIEGPTQLSVVAILDSIGLDKTAFTAEAYNS 205 (290)
Q Consensus 171 L~~~L~~~~~~~~Vi~IvGmgGiGKTTLa~~vy~d 205 (290)
.++.|......+.+|+|.|..|.||||||+.+...
T Consensus 54 a~qlL~~~~~~riIIGIaGpSGSGKTTLAk~Lagl 88 (656)
T PLN02318 54 ACQLLAQKNDGIILVGVAGPSGAGKTVFTEKVLNF 88 (656)
T ss_pred HHHHHHhcCCCeEEEEEECCCCCcHHHHHHHHHhh
Confidence 33444444556899999999999999999999763
No 145
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=95.86 E-value=0.0062 Score=48.81 Aligned_cols=20 Identities=15% Similarity=0.248 Sum_probs=18.5
Q ss_pred EEEEcCCCCChhHHHHHHhc
Q 047336 185 VAILDSIGLDKTAFTAEAYN 204 (290)
Q Consensus 185 i~IvGmgGiGKTTLa~~vy~ 204 (290)
|.++|++|.||||+|+.+-.
T Consensus 2 i~l~G~~GsGKstla~~la~ 21 (154)
T cd00464 2 IVLIGMMGAGKTTVGRLLAK 21 (154)
T ss_pred EEEEcCCCCCHHHHHHHHHH
Confidence 67999999999999999976
No 146
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=95.85 E-value=0.0069 Score=50.65 Aligned_cols=23 Identities=13% Similarity=0.222 Sum_probs=20.5
Q ss_pred EEEEEEcCCCCChhHHHHHHhcc
Q 047336 183 SVVAILDSIGLDKTAFTAEAYNS 205 (290)
Q Consensus 183 ~Vi~IvGmgGiGKTTLa~~vy~d 205 (290)
.++.|+|+.|+|||||++.+...
T Consensus 3 ~~i~l~G~sGsGKsTl~~~l~~~ 25 (186)
T PRK10078 3 KLIWLMGPSGSGKDSLLAALRQR 25 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHhcc
Confidence 36889999999999999999773
No 147
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=95.84 E-value=0.0096 Score=55.37 Aligned_cols=24 Identities=29% Similarity=0.397 Sum_probs=20.5
Q ss_pred CcEEEEEEcCCCCChhH-HHHHHhc
Q 047336 181 QLSVVAILDSIGLDKTA-FTAEAYN 204 (290)
Q Consensus 181 ~~~Vi~IvGmgGiGKTT-La~~vy~ 204 (290)
+-+||++||+.|+|||| ||+....
T Consensus 202 ~~~vi~LVGPTGVGKTTTlAKLAar 226 (407)
T COG1419 202 QKRVIALVGPTGVGKTTTLAKLAAR 226 (407)
T ss_pred cCcEEEEECCCCCcHHHHHHHHHHH
Confidence 37899999999999976 8887655
No 148
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=95.84 E-value=0.0057 Score=49.02 Aligned_cols=22 Identities=9% Similarity=0.234 Sum_probs=19.4
Q ss_pred EEEEEcCCCCChhHHHHHHhcc
Q 047336 184 VVAILDSIGLDKTAFTAEAYNS 205 (290)
Q Consensus 184 Vi~IvGmgGiGKTTLa~~vy~d 205 (290)
+|.+.|++|+||||+|+.+.+.
T Consensus 1 li~l~G~~GsGKST~a~~l~~~ 22 (150)
T cd02021 1 IIVVMGVSGSGKSTVGKALAER 22 (150)
T ss_pred CEEEEcCCCCCHHHHHHHHHhh
Confidence 3678999999999999999874
No 149
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.82 E-value=0.011 Score=55.59 Aligned_cols=45 Identities=11% Similarity=-0.020 Sum_probs=35.6
Q ss_pred CcccccchhHHHHHHHHhcCCCCcEEEEEEcCCCCChhHHHHHHhc
Q 047336 159 RNTVGLDDRMEELLDLLIEGPTQLSVVAILDSIGLDKTAFTAEAYN 204 (290)
Q Consensus 159 ~~~vG~e~~~~~L~~~L~~~~~~~~Vi~IvGmgGiGKTTLa~~vy~ 204 (290)
.+++|.+..++.|.+++..+. -...+-++|+.|+||||+|+.+-+
T Consensus 16 ~eiiGq~~~~~~L~~~~~~~~-~~ha~lf~Gp~G~GKtt~A~~~a~ 60 (397)
T PRK14955 16 ADITAQEHITRTIQNSLRMGR-VGHGYIFSGLRGVGKTTAARVFAK 60 (397)
T ss_pred hhccChHHHHHHHHHHHHhCC-cceeEEEECCCCCCHHHHHHHHHH
Confidence 468999999999988887653 123466899999999999987654
No 150
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=95.81 E-value=0.046 Score=52.31 Aligned_cols=49 Identities=18% Similarity=0.323 Sum_probs=32.1
Q ss_pred cEEEEEEcCCCCChhHHHHHHhccccccccCC--eeEEEECCCCCCHHHHHHHHHHHhh
Q 047336 182 LSVVAILDSIGLDKTAFTAEAYNSSYVKHYFD--YLAWIPAPYQYDPDQILDTVTWLSR 238 (290)
Q Consensus 182 ~~Vi~IvGmgGiGKTTLa~~vy~d~~v~~~F~--~~~wV~vs~~~~~~~ll~~Il~~l~ 238 (290)
..-+-|+|..|+|||+|++.+.+ .+..... .+++++ ..+++..+...+.
T Consensus 141 ~npl~i~G~~G~GKTHLl~Ai~~--~l~~~~~~~~v~yv~------~~~f~~~~~~~l~ 191 (450)
T PRK14087 141 YNPLFIYGESGMGKTHLLKAAKN--YIESNFSDLKVSYMS------GDEFARKAVDILQ 191 (450)
T ss_pred cCceEEECCCCCcHHHHHHHHHH--HHHHhCCCCeEEEEE------HHHHHHHHHHHHH
Confidence 45678999999999999999988 3332221 223333 3466666665554
No 151
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=95.80 E-value=0.0078 Score=51.24 Aligned_cols=26 Identities=23% Similarity=0.325 Sum_probs=23.6
Q ss_pred CCcEEEEEEcCCCCChhHHHHHHhcc
Q 047336 180 TQLSVVAILDSIGLDKTAFTAEAYNS 205 (290)
Q Consensus 180 ~~~~Vi~IvGmgGiGKTTLa~~vy~d 205 (290)
.++++|+++|..|+|||||..++...
T Consensus 20 ~~~~~i~~~G~~gsGKTTli~~l~~~ 45 (207)
T TIGR00073 20 HGLVVLNFMSSPGSGKTTLIEKLIDN 45 (207)
T ss_pred cCcEEEEEECCCCCCHHHHHHHHHHH
Confidence 56999999999999999999998773
No 152
>PRK13695 putative NTPase; Provisional
Probab=95.80 E-value=0.0079 Score=49.64 Aligned_cols=22 Identities=18% Similarity=0.231 Sum_probs=19.7
Q ss_pred EEEEEcCCCCChhHHHHHHhcc
Q 047336 184 VVAILDSIGLDKTAFTAEAYNS 205 (290)
Q Consensus 184 Vi~IvGmgGiGKTTLa~~vy~d 205 (290)
.|+|+|.+|+|||||++.+++.
T Consensus 2 ~i~ltG~~G~GKTTll~~i~~~ 23 (174)
T PRK13695 2 KIGITGPPGVGKTTLVLKIAEL 23 (174)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999998874
No 153
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=95.79 E-value=0.008 Score=47.22 Aligned_cols=23 Identities=22% Similarity=0.225 Sum_probs=20.9
Q ss_pred cEEEEEEcCCCCChhHHHHHHhc
Q 047336 182 LSVVAILDSIGLDKTAFTAEAYN 204 (290)
Q Consensus 182 ~~Vi~IvGmgGiGKTTLa~~vy~ 204 (290)
-.+++|+|..|+|||||.+.+..
T Consensus 11 g~~~~i~G~nGsGKStLl~~l~g 33 (137)
T PF00005_consen 11 GEIVAIVGPNGSGKSTLLKALAG 33 (137)
T ss_dssp TSEEEEEESTTSSHHHHHHHHTT
T ss_pred CCEEEEEccCCCccccceeeecc
Confidence 35889999999999999999987
No 154
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=95.79 E-value=0.0092 Score=48.57 Aligned_cols=23 Identities=17% Similarity=0.042 Sum_probs=20.7
Q ss_pred cEEEEEEcCCCCChhHHHHHHhc
Q 047336 182 LSVVAILDSIGLDKTAFTAEAYN 204 (290)
Q Consensus 182 ~~Vi~IvGmgGiGKTTLa~~vy~ 204 (290)
..||-|.|..|.||||||+.+..
T Consensus 2 g~vIwltGlsGsGKtTlA~~L~~ 24 (156)
T PF01583_consen 2 GFVIWLTGLSGSGKTTLARALER 24 (156)
T ss_dssp -EEEEEESSTTSSHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHH
Confidence 35888999999999999999998
No 155
>PF05659 RPW8: Arabidopsis broad-spectrum mildew resistance protein RPW8; InterPro: IPR008808 This entry represents the RPW8 domain found in several broad-spectrum mildew resistance proteins from Arabidopsis thaliana and other dicots. Plant disease resistance (R) genes control the recognition of specific pathogens and activate subsequent defence responses. The R protein-mediated defences typically involve a rapid, localized necrosis, or hypersensitive response (HR), at the site of infection, and the localised formation of antimicrobial chemicals and proteins that restrict growth of the pathogen. The A. thaliana locus Resistance to Powdery Mildew 8 (RPW8) contains two naturally polymorphic, dominant R genes: RPW8.1 and RPW8.2, which individually control resistance to a broad range of powdery mildew pathogens. They induce localised, salicylic acid-dependent defences similar to those induced by R genes that control specific resistance. Apparently, broad-spectrum resistance mediated by RPW8 uses the same mechanisms as specific resistance [, ]. RPW8.1 and RPW8.2 share similarity with an ~150 amino acid module forming the N terminus of a group of disease resistance proteins, which have a nucleotide-binding site (NBS) and leucine-rich repeats (LRRs) [, ]. The RPW8 domain sequences contain a predicted N-terminal transmembrane (TM) region or possibly a signal peptide, and a coiled-coil (CC) motif [].
Probab=95.79 E-value=0.28 Score=39.48 Aligned_cols=105 Identities=9% Similarity=0.052 Sum_probs=73.9
Q ss_pred cHHHHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhh-hcCCchHHHHHHHHHHHH
Q 047336 3 ISFRLFSERLRRVLAGEEVMLSDTAKQPIHNLNAEVEIVTSWLREFEDDISCLLFHKIAEE-EIDDPDFGTIMDEINCFT 81 (290)
Q Consensus 3 ~~v~~~l~kL~~~~l~~e~~~~~~v~~~v~~L~~eL~~i~~~l~d~~~~~~~~~~~~~~~~-~~~~~~~~~Wl~~lr~~a 81 (290)
++++.+++.|. ..+.........++.-.+.|...++.|...+.+.+ .. ...+..-+.=++++.+..
T Consensus 9 aalG~~~~eLl-k~v~~~~~k~~~fk~~l~~L~sTl~~i~P~i~eI~------------~~~~eld~~~~ee~e~L~~~L 75 (147)
T PF05659_consen 9 AALGAVFGELL-KAVIDASKKSLSFKSILKRLESTLESIIPIIKEID------------KLNVELDRPRQEEIERLKELL 75 (147)
T ss_pred HHHHHHHHHHH-HHHHHHHHHHHhhhhHHHHHHHHHHHhhhHHHHHH------------HHhhhcCCchhHHHHHHHHHH
Confidence 46677777777 77777777778888899999999999999999998 43 223333366778899999
Q ss_pred HHhHhHHHHHHhhhhccccccccccchhhhhHhHHHHHHHHHHHHHHHH
Q 047336 82 YESGKVIDTLINSITQQKSQSRYNKDICDALQGLQSRITEIKQRVQQLK 130 (290)
Q Consensus 82 ~d~eD~lD~~~~~~~~~~g~~~~~~~~~~~~~~ia~~i~~i~~~l~~i~ 130 (290)
.+++++++.|...... . + ...++.+++|+++.+.+....
T Consensus 76 ~~g~~LV~k~sk~~r~-----n---~--~kk~~y~~Ki~~le~~l~~f~ 114 (147)
T PF05659_consen 76 EKGKELVEKCSKVRRW-----N---L--YKKPRYARKIEELEESLRRFI 114 (147)
T ss_pred HHHHHHHHHhccccHH-----H---H--HhhHhHHHHHHHHHHHHHHHh
Confidence 9999999998421110 0 0 233455666666666666544
No 156
>PRK13949 shikimate kinase; Provisional
Probab=95.78 E-value=0.0068 Score=50.05 Aligned_cols=21 Identities=14% Similarity=0.213 Sum_probs=19.3
Q ss_pred EEEEEcCCCCChhHHHHHHhc
Q 047336 184 VVAILDSIGLDKTAFTAEAYN 204 (290)
Q Consensus 184 Vi~IvGmgGiGKTTLa~~vy~ 204 (290)
-|.|+|+.|.|||||++.+.+
T Consensus 3 ~I~liG~~GsGKstl~~~La~ 23 (169)
T PRK13949 3 RIFLVGYMGAGKTTLGKALAR 23 (169)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 588999999999999998876
No 157
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=95.77 E-value=0.0074 Score=49.92 Aligned_cols=23 Identities=4% Similarity=0.101 Sum_probs=20.7
Q ss_pred EEEEEEcCCCCChhHHHHHHhcc
Q 047336 183 SVVAILDSIGLDKTAFTAEAYNS 205 (290)
Q Consensus 183 ~Vi~IvGmgGiGKTTLa~~vy~d 205 (290)
++|-+.|++|+||||+|+.+.+.
T Consensus 3 ~~i~l~G~~gsGKst~a~~l~~~ 25 (175)
T cd00227 3 RIIILNGGSSAGKSSIARALQSV 25 (175)
T ss_pred CEEEEECCCCCCHHHHHHHHHHh
Confidence 47899999999999999999873
No 158
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=95.76 E-value=0.0056 Score=46.48 Aligned_cols=20 Identities=20% Similarity=0.325 Sum_probs=17.3
Q ss_pred EEEEcCCCCChhHHHHHHhc
Q 047336 185 VAILDSIGLDKTAFTAEAYN 204 (290)
Q Consensus 185 i~IvGmgGiGKTTLa~~vy~ 204 (290)
|-|+|.+|+|||+||+.+..
T Consensus 1 I~i~G~~G~GKS~l~~~l~~ 20 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAK 20 (107)
T ss_pred CEEECCCCCCHHHHHHHHHH
Confidence 45899999999999999665
No 159
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=95.75 E-value=0.2 Score=50.60 Aligned_cols=69 Identities=20% Similarity=0.247 Sum_probs=52.5
Q ss_pred hHHHHHHHHhcCCCCcEEEEEEcCCCCChhHHHHHHhccccccccCCeeEEEECCC-CCCHHHHHHHHHHHhhh
Q 047336 167 RMEELLDLLIEGPTQLSVVAILDSIGLDKTAFTAEAYNSSYVKHYFDYLAWIPAPY-QYDPDQILDTVTWLSRR 239 (290)
Q Consensus 167 ~~~~L~~~L~~~~~~~~Vi~IvGmgGiGKTTLa~~vy~d~~v~~~F~~~~wV~vs~-~~~~~~ll~~Il~~l~~ 239 (290)
.+..|.+.|..+ .+.+.+-|..++|-|||||+-.... ... .=..++|.++.. +-++..+++-++..+..
T Consensus 23 ~R~rL~~~L~~~-~~~RL~li~APAGfGKttl~aq~~~--~~~-~~~~v~Wlslde~dndp~rF~~yLi~al~~ 92 (894)
T COG2909 23 VRPRLLDRLRRA-NDYRLILISAPAGFGKTTLLAQWRE--LAA-DGAAVAWLSLDESDNDPARFLSYLIAALQQ 92 (894)
T ss_pred ccHHHHHHHhcC-CCceEEEEeCCCCCcHHHHHHHHHH--hcC-cccceeEeecCCccCCHHHHHHHHHHHHHH
Confidence 456778877765 3588999999999999999988864 111 123589999975 45788898888888874
No 160
>TIGR00764 lon_rel lon-related putative ATP-dependent protease. Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein.
Probab=95.74 E-value=0.027 Score=55.91 Aligned_cols=75 Identities=12% Similarity=0.134 Sum_probs=51.1
Q ss_pred CcccccchhHHHHHHHHhcCCCCcEEEEEEcCCCCChhHHHHHHhccccccc-cCCeeEEEECCCCCCHHHHHHHHHHHh
Q 047336 159 RNTVGLDDRMEELLDLLIEGPTQLSVVAILDSIGLDKTAFTAEAYNSSYVKH-YFDYLAWIPAPYQYDPDQILDTVTWLS 237 (290)
Q Consensus 159 ~~~vG~e~~~~~L~~~L~~~~~~~~Vi~IvGmgGiGKTTLa~~vy~d~~v~~-~F~~~~wV~vs~~~~~~~ll~~Il~~l 237 (290)
++++|.++..+.+...+..+. -+-++|++|+||||||+.+.+ .+.. .|...+.+.-+. .+...+++.+..++
T Consensus 18 ~~viG~~~a~~~l~~a~~~~~----~~ll~G~pG~GKT~la~~la~--~l~~~~~~~~~~~~n~~-~~~~~~~~~v~~~~ 90 (608)
T TIGR00764 18 DQVIGQEEAVEIIKKAAKQKR----NVLLIGEPGVGKSMLAKAMAE--LLPDEELEDILVYPNPE-DPNMPRIVEVPAGE 90 (608)
T ss_pred hhccCHHHHHHHHHHHHHcCC----CEEEECCCCCCHHHHHHHHHH--HcCchhheeEEEEeCCC-CCchHHHHHHHHhh
Confidence 568899988887777666432 344899999999999999987 4433 344444444332 24556788888776
Q ss_pred hhc
Q 047336 238 RRN 240 (290)
Q Consensus 238 ~~~ 240 (290)
...
T Consensus 91 g~~ 93 (608)
T TIGR00764 91 GRE 93 (608)
T ss_pred chH
Confidence 643
No 161
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.73 E-value=0.011 Score=56.55 Aligned_cols=44 Identities=18% Similarity=0.249 Sum_probs=37.1
Q ss_pred CcccccchhHHHHHHHHhcCCCCc-EEEEEEcCCCCChhHHHHHHhc
Q 047336 159 RNTVGLDDRMEELLDLLIEGPTQL-SVVAILDSIGLDKTAFTAEAYN 204 (290)
Q Consensus 159 ~~~vG~e~~~~~L~~~L~~~~~~~-~Vi~IvGmgGiGKTTLa~~vy~ 204 (290)
.+++|.+.....|.+++..+. + ..+-++|+.|+||||+|+.+.+
T Consensus 18 ~dvVGQe~iv~~L~~~i~~~r--i~ha~Lf~GP~GtGKTTlAriLAk 62 (484)
T PRK14956 18 RDVIHQDLAIGALQNALKSGK--IGHAYIFFGPRGVGKTTIARILAK 62 (484)
T ss_pred HHHhChHHHHHHHHHHHHcCC--CCeEEEEECCCCCCHHHHHHHHHH
Confidence 468999999999999888654 3 3467899999999999999876
No 162
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=95.73 E-value=0.016 Score=55.97 Aligned_cols=47 Identities=23% Similarity=0.237 Sum_probs=36.7
Q ss_pred CcccccchhHHHHHHHHhc-----------CCCCcEEEEEEcCCCCChhHHHHHHhcc
Q 047336 159 RNTVGLDDRMEELLDLLIE-----------GPTQLSVVAILDSIGLDKTAFTAEAYNS 205 (290)
Q Consensus 159 ~~~vG~e~~~~~L~~~L~~-----------~~~~~~Vi~IvGmgGiGKTTLa~~vy~d 205 (290)
.++.|.+..+++|.+.+.. +-...+-+-++|++|+|||++|+.+++.
T Consensus 182 ~dIgGl~~~i~~i~~~v~lp~~~~~l~~~~gl~~p~GILLyGPPGTGKT~LAKAlA~e 239 (512)
T TIGR03689 182 ADIGGLDSQIEQIRDAVELPFLHPELYREYDLKPPKGVLLYGPPGCGKTLIAKAVANS 239 (512)
T ss_pred HHcCChHHHHHHHHHHHHHHhhCHHHHHhccCCCCcceEEECCCCCcHHHHHHHHHHh
Confidence 4578899999998887642 1123455788999999999999999984
No 163
>PF00406 ADK: Adenylate kinase; InterPro: IPR000850 Adenylate kinases (ADK) are phosphotransferases that catalyse the reversible reaction AMP + MgATP = ADP + MgADP an essential reaction for many processes in living cells. Two ADK isozymes have been identified in mammalian cells. These specifically bind AMP and favour binding to ATP over other nucleotide triphosphates (AK1 is cytosolic and AK2 is located in the mitochondria). A third ADK has been identified in bovine heart and human cells [], this is a mitochondrial GTP:AMP phosphotransferase, also specific for the phosphorylation of AMP, but can only use GTP or ITP as a substrate []. ADK has also been identified in different bacterial species and in yeast []. Two further enzymes are known to be related to the ADK family, i.e. yeast uridine monophosphokinase and slime mold UMP-CMP kinase. Within the ADK family there are several conserved regions, including the ATP-binding domains. One of the most conserved areas includes an Arg residue, whose modification inactivates the enzyme, together with an Asp that resides in the catalytic cleft of the enzyme and participates in a salt bridge.; GO: 0005524 ATP binding, 0019205 nucleobase-containing compound kinase activity, 0006139 nucleobase-containing compound metabolic process; PDB: 1ZD8_A 3TLX_D 1TEV_A 1ZAK_B 3CM0_A 3ADK_A 1ZIP_A 1ZIO_A 1ZIN_A 3NDP_A ....
Probab=95.72 E-value=0.02 Score=46.02 Aligned_cols=18 Identities=22% Similarity=0.161 Sum_probs=17.0
Q ss_pred EEcCCCCChhHHHHHHhc
Q 047336 187 ILDSIGLDKTAFTAEAYN 204 (290)
Q Consensus 187 IvGmgGiGKTTLa~~vy~ 204 (290)
|+|++|+||||+|+.+..
T Consensus 1 i~G~PgsGK~t~~~~la~ 18 (151)
T PF00406_consen 1 ILGPPGSGKGTQAKRLAK 18 (151)
T ss_dssp EEESTTSSHHHHHHHHHH
T ss_pred CcCCCCCChHHHHHHHHH
Confidence 689999999999999987
No 164
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=95.72 E-value=0.012 Score=55.20 Aligned_cols=47 Identities=19% Similarity=0.185 Sum_probs=36.9
Q ss_pred CcccccchhHHHHHHHHhc-----------CCCCcEEEEEEcCCCCChhHHHHHHhcc
Q 047336 159 RNTVGLDDRMEELLDLLIE-----------GPTQLSVVAILDSIGLDKTAFTAEAYNS 205 (290)
Q Consensus 159 ~~~vG~e~~~~~L~~~L~~-----------~~~~~~Vi~IvGmgGiGKTTLa~~vy~d 205 (290)
.++.|.+..+++|.+.+.- +-...+-+-++|++|+|||+||+.+.+.
T Consensus 145 ~digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LAkalA~~ 202 (398)
T PTZ00454 145 SDIGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLAKAVAHH 202 (398)
T ss_pred HHcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHh
Confidence 4688999999888886641 1123566889999999999999999883
No 165
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=95.70 E-value=0.037 Score=52.50 Aligned_cols=23 Identities=30% Similarity=0.304 Sum_probs=19.2
Q ss_pred cEEEEEEcCCCCChhHHHHHHhc
Q 047336 182 LSVVAILDSIGLDKTAFTAEAYN 204 (290)
Q Consensus 182 ~~Vi~IvGmgGiGKTTLa~~vy~ 204 (290)
-.++.++|++|+||||++..+-.
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA~ 243 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLAA 243 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 46999999999999997776644
No 166
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=95.69 E-value=0.0096 Score=50.41 Aligned_cols=54 Identities=24% Similarity=0.171 Sum_probs=30.1
Q ss_pred cEEEEEEcCCCCChhHHHHHHhccccccccCCeeEEEECCCCCC--HHHHHHHHHHHhh
Q 047336 182 LSVVAILDSIGLDKTAFTAEAYNSSYVKHYFDYLAWIPAPYQYD--PDQILDTVTWLSR 238 (290)
Q Consensus 182 ~~Vi~IvGmgGiGKTTLa~~vy~d~~v~~~F~~~~wV~vs~~~~--~~~ll~~Il~~l~ 238 (290)
++||.+||+.|+||||.+-++-... +.+=..++.|+. ..|. ..+=|+...+.+.
T Consensus 1 p~vi~lvGptGvGKTTt~aKLAa~~--~~~~~~v~lis~-D~~R~ga~eQL~~~a~~l~ 56 (196)
T PF00448_consen 1 PKVIALVGPTGVGKTTTIAKLAARL--KLKGKKVALISA-DTYRIGAVEQLKTYAEILG 56 (196)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHH--HHTT--EEEEEE-STSSTHHHHHHHHHHHHHT
T ss_pred CEEEEEECCCCCchHhHHHHHHHHH--hhccccceeecC-CCCCccHHHHHHHHHHHhc
Confidence 4799999999999998555444422 222223455553 3333 3334555555554
No 167
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=95.69 E-value=0.013 Score=59.51 Aligned_cols=44 Identities=16% Similarity=0.203 Sum_probs=36.4
Q ss_pred CcccccchhHHHHHHHHhcCCCCcEEEEEEcCCCCChhHHHHHHhc
Q 047336 159 RNTVGLDDRMEELLDLLIEGPTQLSVVAILDSIGLDKTAFTAEAYN 204 (290)
Q Consensus 159 ~~~vG~e~~~~~L~~~L~~~~~~~~Vi~IvGmgGiGKTTLa~~vy~ 204 (290)
..++||+.+.++++..|..... . -+-++|.+|+|||+||+.+..
T Consensus 186 ~~liGR~~ei~~~i~iL~r~~~-~-n~LLvGppGvGKT~lae~la~ 229 (758)
T PRK11034 186 DPLIGREKELERAIQVLCRRRK-N-NPLLVGESGVGKTAIAEGLAW 229 (758)
T ss_pred CcCcCCCHHHHHHHHHHhccCC-C-CeEEECCCCCCHHHHHHHHHH
Confidence 4599999999999999887432 2 234799999999999999886
No 168
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=95.69 E-value=0.0077 Score=47.24 Aligned_cols=28 Identities=18% Similarity=0.160 Sum_probs=18.6
Q ss_pred EEEEcCCCCChhHHHHHHhccccccccCCe
Q 047336 185 VAILDSIGLDKTAFTAEAYNSSYVKHYFDY 214 (290)
Q Consensus 185 i~IvGmgGiGKTTLa~~vy~d~~v~~~F~~ 214 (290)
+-++|.+|+||||||+.+-. .+...|..
T Consensus 2 vLleg~PG~GKT~la~~lA~--~~~~~f~R 29 (131)
T PF07726_consen 2 VLLEGVPGVGKTTLAKALAR--SLGLSFKR 29 (131)
T ss_dssp EEEES---HHHHHHHHHHHH--HTT--EEE
T ss_pred EeeECCCccHHHHHHHHHHH--HcCCceeE
Confidence 45899999999999999988 55666743
No 169
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=95.68 E-value=0.14 Score=44.13 Aligned_cols=71 Identities=13% Similarity=0.170 Sum_probs=42.1
Q ss_pred cccc-chhHHHHHHHHhcC-CCCcEEEEEEcCCCCChhHHHHHHhccccccccC-Ce-eEEEECCCCCCHHHHHHHHHHH
Q 047336 161 TVGL-DDRMEELLDLLIEG-PTQLSVVAILDSIGLDKTAFTAEAYNSSYVKHYF-DY-LAWIPAPYQYDPDQILDTVTWL 236 (290)
Q Consensus 161 ~vG~-e~~~~~L~~~L~~~-~~~~~Vi~IvGmgGiGKTTLa~~vy~d~~v~~~F-~~-~~wV~vs~~~~~~~ll~~Il~~ 236 (290)
++|- ....-...+.+..+ ......+-|+|..|+|||.|.+.+++ .+.+.. +. +++++ ..++...+...
T Consensus 11 v~g~~N~~a~~~~~~ia~~~~~~~~~l~l~G~~G~GKTHLL~Ai~~--~~~~~~~~~~v~y~~------~~~f~~~~~~~ 82 (219)
T PF00308_consen 11 VVGESNELAYAAAKAIAENPGERYNPLFLYGPSGLGKTHLLQAIAN--EAQKQHPGKRVVYLS------AEEFIREFADA 82 (219)
T ss_dssp --TTTTHHHHHHHHHHHHSTTTSSSEEEEEESTTSSHHHHHHHHHH--HHHHHCTTS-EEEEE------HHHHHHHHHHH
T ss_pred CcCCcHHHHHHHHHHHHhcCCCCCCceEEECCCCCCHHHHHHHHHH--HHHhccccccceeec------HHHHHHHHHHH
Confidence 4563 33334444445443 33455678999999999999999999 443322 22 44444 45666666655
Q ss_pred hhh
Q 047336 237 SRR 239 (290)
Q Consensus 237 l~~ 239 (290)
+..
T Consensus 83 ~~~ 85 (219)
T PF00308_consen 83 LRD 85 (219)
T ss_dssp HHT
T ss_pred HHc
Confidence 543
No 170
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=95.68 E-value=0.0079 Score=49.65 Aligned_cols=21 Identities=19% Similarity=0.290 Sum_probs=18.0
Q ss_pred EEEEcCCCCChhHHHHHHhcc
Q 047336 185 VAILDSIGLDKTAFTAEAYNS 205 (290)
Q Consensus 185 i~IvGmgGiGKTTLa~~vy~d 205 (290)
|.|.|.+|+|||||++.+.+.
T Consensus 2 i~iTG~pG~GKTTll~k~i~~ 22 (168)
T PF03266_consen 2 IFITGPPGVGKTTLLKKVIEE 22 (168)
T ss_dssp EEEES-TTSSHHHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHHHH
Confidence 678999999999999998874
No 171
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=95.68 E-value=0.0066 Score=49.42 Aligned_cols=21 Identities=10% Similarity=0.229 Sum_probs=18.4
Q ss_pred EEEEcCCCCChhHHHHHHhcc
Q 047336 185 VAILDSIGLDKTAFTAEAYNS 205 (290)
Q Consensus 185 i~IvGmgGiGKTTLa~~vy~d 205 (290)
|.|+|+.|+||||+|+.+-+.
T Consensus 1 i~l~G~~GsGKSTla~~l~~~ 21 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALAHR 21 (163)
T ss_pred CEEECCCCCCHHHHHHHHHHh
Confidence 468999999999999998873
No 172
>COG3899 Predicted ATPase [General function prediction only]
Probab=95.66 E-value=0.048 Score=56.22 Aligned_cols=79 Identities=14% Similarity=0.079 Sum_probs=53.6
Q ss_pred cccccchhHHHHHHHHhc-CCCCcEEEEEEcCCCCChhHHHHHHhccccccccCCeeEEEE---CCC--CC-CHHHHHHH
Q 047336 160 NTVGLDDRMEELLDLLIE-GPTQLSVVAILDSIGLDKTAFTAEAYNSSYVKHYFDYLAWIP---APY--QY-DPDQILDT 232 (290)
Q Consensus 160 ~~vG~e~~~~~L~~~L~~-~~~~~~Vi~IvGmgGiGKTTLa~~vy~d~~v~~~F~~~~wV~---vs~--~~-~~~~ll~~ 232 (290)
.++||+.+.+.|...+.. ....-.++.+.|..|||||+|++.|.+ .+...+...+--. ... ++ .....+++
T Consensus 1 ~l~GRe~ev~~Ll~~f~~v~~g~~~~~lv~G~sGIGKsalv~ev~~--~i~~~~~~~i~~~f~q~~~~ipl~~lvq~~r~ 78 (849)
T COG3899 1 PLYGRETELAQLLAAFDRVSKGRGEVVLVAGESGIGKSALVNEVHK--PITQQRGYFIKGKFDQFERNIPLSPLVQAFRD 78 (849)
T ss_pred CCCchHhHHHHHHHHHHHHhCCCeEEEEEeecCCCcHHHHHHHHHH--HHhccceeeeHhhcccccCCCchHHHHHHHHH
Confidence 378999999999988875 233466999999999999999999998 4443322211111 111 12 34567788
Q ss_pred HHHHhhhc
Q 047336 233 VTWLSRRN 240 (290)
Q Consensus 233 Il~~l~~~ 240 (290)
++.++...
T Consensus 79 l~~~ll~~ 86 (849)
T COG3899 79 LMGQLLSE 86 (849)
T ss_pred HHHHHhhc
Confidence 88887433
No 173
>TIGR00041 DTMP_kinase thymidylate kinase. Function: phosphorylation of DTMP to form DTDP in both de novo and salvage pathways of DTTP synthesis. Catalytic activity: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate.
Probab=95.66 E-value=0.028 Score=47.08 Aligned_cols=23 Identities=17% Similarity=-0.002 Sum_probs=21.0
Q ss_pred EEEEEEcCCCCChhHHHHHHhcc
Q 047336 183 SVVAILDSIGLDKTAFTAEAYNS 205 (290)
Q Consensus 183 ~Vi~IvGmgGiGKTTLa~~vy~d 205 (290)
..|+|.|..|+||||+++.+.+.
T Consensus 4 ~~IvieG~~GsGKsT~~~~L~~~ 26 (195)
T TIGR00041 4 MFIVIEGIDGAGKTTQANLLKKL 26 (195)
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 57999999999999999999874
No 174
>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]
Probab=95.65 E-value=0.0081 Score=51.09 Aligned_cols=24 Identities=17% Similarity=0.228 Sum_probs=21.0
Q ss_pred EEEEEEcCCCCChhHHHHHHhccc
Q 047336 183 SVVAILDSIGLDKTAFTAEAYNSS 206 (290)
Q Consensus 183 ~Vi~IvGmgGiGKTTLa~~vy~d~ 206 (290)
.-|.|+|++|+|||||+..+..+.
T Consensus 6 ~kivv~G~~g~GKTtl~~~l~~~~ 29 (219)
T COG1100 6 FKIVVLGDGGVGKTTLLNRLVGDE 29 (219)
T ss_pred EEEEEEcCCCccHHHHHHHHhcCc
Confidence 568899999999999999888754
No 175
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=95.65 E-value=0.082 Score=50.56 Aligned_cols=30 Identities=23% Similarity=0.274 Sum_probs=24.1
Q ss_pred CcEEEEEEcCCCCChhHHHHHHhccccccccC
Q 047336 181 QLSVVAILDSIGLDKTAFTAEAYNSSYVKHYF 212 (290)
Q Consensus 181 ~~~Vi~IvGmgGiGKTTLa~~vy~d~~v~~~F 212 (290)
...-+-|+|..|+|||+|++.+.+ .+...+
T Consensus 147 ~~~~l~l~G~~G~GKThL~~ai~~--~~~~~~ 176 (450)
T PRK00149 147 AYNPLFIYGGVGLGKTHLLHAIGN--YILEKN 176 (450)
T ss_pred cCCeEEEECCCCCCHHHHHHHHHH--HHHHhC
Confidence 345678999999999999999999 444443
No 176
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=95.64 E-value=0.0092 Score=47.86 Aligned_cols=23 Identities=22% Similarity=0.290 Sum_probs=19.7
Q ss_pred EEEEEcCCCCChhHHHHHHhccc
Q 047336 184 VVAILDSIGLDKTAFTAEAYNSS 206 (290)
Q Consensus 184 Vi~IvGmgGiGKTTLa~~vy~d~ 206 (290)
.|+++|.+|+|||||++.+.++.
T Consensus 2 ki~~~G~~~~GKTsl~~~l~~~~ 24 (164)
T cd04139 2 KVIVVGAGGVGKSALTLQFMYDE 24 (164)
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 47899999999999999887643
No 177
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.63 E-value=0.013 Score=57.18 Aligned_cols=45 Identities=13% Similarity=0.131 Sum_probs=36.5
Q ss_pred CcccccchhHHHHHHHHhcCCCCcEEEEEEcCCCCChhHHHHHHhc
Q 047336 159 RNTVGLDDRMEELLDLLIEGPTQLSVVAILDSIGLDKTAFTAEAYN 204 (290)
Q Consensus 159 ~~~vG~e~~~~~L~~~L~~~~~~~~Vi~IvGmgGiGKTTLa~~vy~ 204 (290)
.+++|.+..++.|.+.+..+. -...+-++|+.|+||||+|+.+.+
T Consensus 16 ~diiGq~~~v~~L~~~i~~~r-l~ha~Lf~Gp~GvGKTTlAr~lAk 60 (546)
T PRK14957 16 AEVAGQQHALNSLVHALETQK-VHHAYLFTGTRGVGKTTLGRLLAK 60 (546)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHH
Confidence 468999999999999887653 234466899999999999998865
No 178
>COG0237 CoaE Dephospho-CoA kinase [Coenzyme metabolism]
Probab=95.63 E-value=0.0097 Score=50.58 Aligned_cols=23 Identities=13% Similarity=0.268 Sum_probs=20.8
Q ss_pred cEEEEEEcCCCCChhHHHHHHhc
Q 047336 182 LSVVAILDSIGLDKTAFTAEAYN 204 (290)
Q Consensus 182 ~~Vi~IvGmgGiGKTTLa~~vy~ 204 (290)
..+|+++|+.|+||||.|+.+-+
T Consensus 2 ~~iIglTG~igsGKStva~~~~~ 24 (201)
T COG0237 2 MLIIGLTGGIGSGKSTVAKILAE 24 (201)
T ss_pred ceEEEEecCCCCCHHHHHHHHHH
Confidence 46899999999999999998765
No 179
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=95.63 E-value=0.019 Score=51.93 Aligned_cols=36 Identities=19% Similarity=0.189 Sum_probs=27.3
Q ss_pred HHHHHHHhcCCCCcEEEEEEcCCCCChhHHHHHHhc
Q 047336 169 EELLDLLIEGPTQLSVVAILDSIGLDKTAFTAEAYN 204 (290)
Q Consensus 169 ~~L~~~L~~~~~~~~Vi~IvGmgGiGKTTLa~~vy~ 204 (290)
..+.+-+........+|+|+|.+|+|||||+..+..
T Consensus 21 ~~~~~~~~~~~~~~~~i~i~G~~G~GKttl~~~l~~ 56 (300)
T TIGR00750 21 KQLLDRIMPYTGNAHRVGITGTPGAGKSTLLEALGM 56 (300)
T ss_pred HHHHHhCCcccCCceEEEEECCCCCCHHHHHHHHHH
Confidence 344444443345689999999999999999988766
No 180
>PRK08727 hypothetical protein; Validated
Probab=95.62 E-value=0.028 Score=48.81 Aligned_cols=39 Identities=13% Similarity=0.066 Sum_probs=28.7
Q ss_pred cEEEEEEcCCCCChhHHHHHHhccccccccCCeeEEEECCC
Q 047336 182 LSVVAILDSIGLDKTAFTAEAYNSSYVKHYFDYLAWIPAPY 222 (290)
Q Consensus 182 ~~Vi~IvGmgGiGKTTLa~~vy~d~~v~~~F~~~~wV~vs~ 222 (290)
..-+.|+|..|+|||+|++.+.+ ..........++++.+
T Consensus 41 ~~~l~l~G~~G~GKThL~~a~~~--~~~~~~~~~~y~~~~~ 79 (233)
T PRK08727 41 SDWLYLSGPAGTGKTHLALALCA--AAEQAGRSSAYLPLQA 79 (233)
T ss_pred CCeEEEECCCCCCHHHHHHHHHH--HHHHcCCcEEEEeHHH
Confidence 34589999999999999999988 3444434556666543
No 181
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=95.62 E-value=0.0079 Score=48.50 Aligned_cols=21 Identities=14% Similarity=0.137 Sum_probs=19.0
Q ss_pred EEEEEcCCCCChhHHHHHHhc
Q 047336 184 VVAILDSIGLDKTAFTAEAYN 204 (290)
Q Consensus 184 Vi~IvGmgGiGKTTLa~~vy~ 204 (290)
||.|+|.+|+||||||+.+-.
T Consensus 1 ~i~i~G~~GsGKSTla~~L~~ 21 (149)
T cd02027 1 VIWLTGLSGSGKSTIARALEE 21 (149)
T ss_pred CEEEEcCCCCCHHHHHHHHHH
Confidence 578999999999999998876
No 182
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.61 E-value=0.05 Score=50.62 Aligned_cols=24 Identities=13% Similarity=0.210 Sum_probs=21.1
Q ss_pred CcEEEEEEcCCCCChhHHHHHHhc
Q 047336 181 QLSVVAILDSIGLDKTAFTAEAYN 204 (290)
Q Consensus 181 ~~~Vi~IvGmgGiGKTTLa~~vy~ 204 (290)
...++.++|+.|+||||++..+..
T Consensus 205 ~~~ii~lvGptGvGKTTt~akLA~ 228 (407)
T PRK12726 205 NHRIISLIGQTGVGKTTTLVKLGW 228 (407)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 468999999999999998887765
No 183
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=95.60 E-value=0.026 Score=50.54 Aligned_cols=25 Identities=24% Similarity=0.287 Sum_probs=23.5
Q ss_pred CCcEEEEEEcCCCCChhHHHHHHhc
Q 047336 180 TQLSVVAILDSIGLDKTAFTAEAYN 204 (290)
Q Consensus 180 ~~~~Vi~IvGmgGiGKTTLa~~vy~ 204 (290)
.+..++.|+|.+|.|||||+..+.+
T Consensus 102 ~~~~~v~l~G~pGsGKTTLl~~l~~ 126 (290)
T PRK10463 102 RKQLVLNLVSSPGSGKTTLLTETLM 126 (290)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHH
Confidence 5699999999999999999999988
No 184
>COG2019 AdkA Archaeal adenylate kinase [Nucleotide transport and metabolism]
Probab=95.60 E-value=0.011 Score=48.40 Aligned_cols=23 Identities=30% Similarity=0.258 Sum_probs=20.9
Q ss_pred cEEEEEEcCCCCChhHHHHHHhc
Q 047336 182 LSVVAILDSIGLDKTAFTAEAYN 204 (290)
Q Consensus 182 ~~Vi~IvGmgGiGKTTLa~~vy~ 204 (290)
..|+.|+|.+|+||||+.+.+-.
T Consensus 4 ~kvvvitGVpGvGKTTVl~~~~~ 26 (189)
T COG2019 4 RKVVVITGVPGVGKTTVLKIALK 26 (189)
T ss_pred ceEEEEEcCCCCChHHHHHHHHH
Confidence 68999999999999999988776
No 185
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=95.58 E-value=0.009 Score=49.78 Aligned_cols=22 Identities=18% Similarity=0.267 Sum_probs=19.7
Q ss_pred EEEEEcCCCCChhHHHHHHhcc
Q 047336 184 VVAILDSIGLDKTAFTAEAYNS 205 (290)
Q Consensus 184 Vi~IvGmgGiGKTTLa~~vy~d 205 (290)
.|-|+|.+|.||||+|+.+-+.
T Consensus 2 riiilG~pGaGK~T~A~~La~~ 23 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKK 23 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 4679999999999999999884
No 186
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=95.58 E-value=0.016 Score=50.06 Aligned_cols=21 Identities=29% Similarity=0.284 Sum_probs=18.1
Q ss_pred EEEEEcCCCCChhHHHHHHhc
Q 047336 184 VVAILDSIGLDKTAFTAEAYN 204 (290)
Q Consensus 184 Vi~IvGmgGiGKTTLa~~vy~ 204 (290)
.|+|.|-||+||||+|-.+..
T Consensus 2 kIaI~GKGG~GKTtiaalll~ 22 (255)
T COG3640 2 KIAITGKGGVGKTTIAALLLK 22 (255)
T ss_pred eEEEecCCCccHHHHHHHHHH
Confidence 689999999999999888433
No 187
>PRK13765 ATP-dependent protease Lon; Provisional
Probab=95.57 E-value=0.025 Score=56.23 Aligned_cols=75 Identities=15% Similarity=0.136 Sum_probs=55.1
Q ss_pred CcccccchhHHHHHHHHhcCCCCcEEEEEEcCCCCChhHHHHHHhccccccccCCeeEEEECCCCCCHHHHHHHHHHHhh
Q 047336 159 RNTVGLDDRMEELLDLLIEGPTQLSVVAILDSIGLDKTAFTAEAYNSSYVKHYFDYLAWIPAPYQYDPDQILDTVTWLSR 238 (290)
Q Consensus 159 ~~~vG~e~~~~~L~~~L~~~~~~~~Vi~IvGmgGiGKTTLa~~vy~d~~v~~~F~~~~wV~vs~~~~~~~ll~~Il~~l~ 238 (290)
++++|.++.++.|...+..+ ..+-++|.+|+||||||+.+.+.. -..+|+..+|..-+. -+...+++.+..++.
T Consensus 31 ~~vigq~~a~~~L~~~~~~~----~~~l~~G~~G~GKttla~~l~~~l-~~~~~~~~~~~~np~-~~~~~~~~~v~~~~G 104 (637)
T PRK13765 31 DQVIGQEHAVEVIKKAAKQR----RHVMMIGSPGTGKSMLAKAMAELL-PKEELQDILVYPNPE-DPNNPKIRTVPAGKG 104 (637)
T ss_pred HHcCChHHHHHHHHHHHHhC----CeEEEECCCCCcHHHHHHHHHHHc-ChHhHHHheEeeCCC-cchHHHHHHHHHhcC
Confidence 45899988888887766644 257789999999999999988732 223467788877643 366778888876655
Q ss_pred h
Q 047336 239 R 239 (290)
Q Consensus 239 ~ 239 (290)
.
T Consensus 105 ~ 105 (637)
T PRK13765 105 K 105 (637)
T ss_pred H
Confidence 4
No 188
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=95.57 E-value=0.01 Score=49.09 Aligned_cols=23 Identities=9% Similarity=0.190 Sum_probs=20.5
Q ss_pred cEEEEEEcCCCCChhHHHHHHhc
Q 047336 182 LSVVAILDSIGLDKTAFTAEAYN 204 (290)
Q Consensus 182 ~~Vi~IvGmgGiGKTTLa~~vy~ 204 (290)
...|.|+|+.|.|||||++.+-+
T Consensus 4 ~~~I~liG~~GaGKStl~~~La~ 26 (172)
T PRK05057 4 KRNIFLVGPMGAGKSTIGRQLAQ 26 (172)
T ss_pred CCEEEEECCCCcCHHHHHHHHHH
Confidence 34689999999999999999976
No 189
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=95.56 E-value=0.0094 Score=48.48 Aligned_cols=42 Identities=19% Similarity=0.133 Sum_probs=30.2
Q ss_pred EEEEEcCCCCChhHHHHHHhccccccccCCeeEEEECCCCCCHHHHHHHHHHHhh
Q 047336 184 VVAILDSIGLDKTAFTAEAYNSSYVKHYFDYLAWIPAPYQYDPDQILDTVTWLSR 238 (290)
Q Consensus 184 Vi~IvGmgGiGKTTLa~~vy~d~~v~~~F~~~~wV~vs~~~~~~~ll~~Il~~l~ 238 (290)
+|.|-|++|+||||+|+.+-++...+. + +.-.++++|.+..+
T Consensus 2 ~ItIsG~pGsG~TTva~~lAe~~gl~~---------v----saG~iFR~~A~e~g 43 (179)
T COG1102 2 VITISGLPGSGKTTVARELAEHLGLKL---------V----SAGTIFREMARERG 43 (179)
T ss_pred EEEeccCCCCChhHHHHHHHHHhCCce---------e----eccHHHHHHHHHcC
Confidence 789999999999999999987433221 1 23466777776654
No 190
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.56 E-value=0.03 Score=54.15 Aligned_cols=24 Identities=25% Similarity=0.290 Sum_probs=20.9
Q ss_pred CcEEEEEEcCCCCChhHHHHHHhc
Q 047336 181 QLSVVAILDSIGLDKTAFTAEAYN 204 (290)
Q Consensus 181 ~~~Vi~IvGmgGiGKTTLa~~vy~ 204 (290)
.-.+|+|+|.+|+||||++.++..
T Consensus 349 ~G~vIaLVGPtGvGKTTtaakLAa 372 (559)
T PRK12727 349 RGGVIALVGPTGAGKTTTIAKLAQ 372 (559)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHH
Confidence 357999999999999999987765
No 191
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=95.56 E-value=0.02 Score=52.41 Aligned_cols=36 Identities=25% Similarity=0.295 Sum_probs=27.9
Q ss_pred HHHHHHHhcCCCCcEEEEEEcCCCCChhHHHHHHhc
Q 047336 169 EELLDLLIEGPTQLSVVAILDSIGLDKTAFTAEAYN 204 (290)
Q Consensus 169 ~~L~~~L~~~~~~~~Vi~IvGmgGiGKTTLa~~vy~ 204 (290)
..|.+.+.....+..+|+|.|.+|+|||||+..+..
T Consensus 43 ~~l~~~~~~~~~~~~~igi~G~~GaGKSTl~~~l~~ 78 (332)
T PRK09435 43 QELLDALLPHTGNALRIGITGVPGVGKSTFIEALGM 78 (332)
T ss_pred HHHHHHHhhcCCCcEEEEEECCCCCCHHHHHHHHHH
Confidence 455555544345688999999999999999998765
No 192
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=95.56 E-value=0.016 Score=48.21 Aligned_cols=25 Identities=8% Similarity=0.189 Sum_probs=22.0
Q ss_pred cEEEEEEcCCCCChhHHHHHHhccc
Q 047336 182 LSVVAILDSIGLDKTAFTAEAYNSS 206 (290)
Q Consensus 182 ~~Vi~IvGmgGiGKTTLa~~vy~d~ 206 (290)
-.++.|.|+.|+||+||++.++++.
T Consensus 4 G~l~vlsgPSG~GKsTl~k~L~~~~ 28 (191)
T COG0194 4 GLLIVLSGPSGVGKSTLVKALLEDD 28 (191)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhhc
Confidence 3578899999999999999999954
No 193
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=95.55 E-value=0.017 Score=50.09 Aligned_cols=23 Identities=13% Similarity=0.125 Sum_probs=20.4
Q ss_pred cEEEEEEcCCCCChhHHHHHHhc
Q 047336 182 LSVVAILDSIGLDKTAFTAEAYN 204 (290)
Q Consensus 182 ~~Vi~IvGmgGiGKTTLa~~vy~ 204 (290)
=.+++|+|..|+|||||++.+--
T Consensus 33 Ge~lgivGeSGsGKSTL~r~l~G 55 (252)
T COG1124 33 GETLGIVGESGSGKSTLARLLAG 55 (252)
T ss_pred CCEEEEEcCCCCCHHHHHHHHhc
Confidence 46899999999999999998854
No 194
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=95.54 E-value=0.022 Score=49.95 Aligned_cols=66 Identities=14% Similarity=0.113 Sum_probs=36.2
Q ss_pred hHHHHHHHHhcCCCCcEEEEEEcCCCCChhHHHHHHhccccccccCCeeEEEECCCCCCHHHHHHH
Q 047336 167 RMEELLDLLIEGPTQLSVVAILDSIGLDKTAFTAEAYNSSYVKHYFDYLAWIPAPYQYDPDQILDT 232 (290)
Q Consensus 167 ~~~~L~~~L~~~~~~~~Vi~IvGmgGiGKTTLa~~vy~d~~v~~~F~~~~wV~vs~~~~~~~ll~~ 232 (290)
...+|++.+.....+..+|+|.|++|.||+||.-.+-....-+.+==.++-|.-|.+|+=-.||-+
T Consensus 14 ~~~~ll~~l~~~~g~a~~iGiTG~PGaGKSTli~~l~~~~~~~g~~VaVlAVDPSSp~tGGAlLGD 79 (266)
T PF03308_consen 14 EARELLKRLYPHTGRAHVIGITGPPGAGKSTLIDALIRELRERGKRVAVLAVDPSSPFTGGALLGD 79 (266)
T ss_dssp HHHHHHHHHGGGTT-SEEEEEEE-TTSSHHHHHHHHHHHHHHTT--EEEEEE-GGGGCC---SS--
T ss_pred HHHHHHHHHHhhcCCceEEEeeCCCCCcHHHHHHHHHHHHhhcCCceEEEEECCCCCCCCCccccc
Confidence 456677777765556889999999999999999877662221111111233333556655554443
No 195
>PRK06761 hypothetical protein; Provisional
Probab=95.54 E-value=0.022 Score=50.90 Aligned_cols=24 Identities=13% Similarity=0.093 Sum_probs=21.6
Q ss_pred EEEEEEcCCCCChhHHHHHHhccc
Q 047336 183 SVVAILDSIGLDKTAFTAEAYNSS 206 (290)
Q Consensus 183 ~Vi~IvGmgGiGKTTLa~~vy~d~ 206 (290)
.+|.|.|++|+||||+++.+.+..
T Consensus 4 ~lIvI~G~~GsGKTTla~~L~~~L 27 (282)
T PRK06761 4 KLIIIEGLPGFGKSTTAKMLNDIL 27 (282)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhc
Confidence 578999999999999999999843
No 196
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=95.53 E-value=0.017 Score=54.92 Aligned_cols=52 Identities=19% Similarity=0.238 Sum_probs=38.0
Q ss_pred CcccccchhHHHHHHHHhc-----------CCCCcEEEEEEcCCCCChhHHHHHHhccccccccC
Q 047336 159 RNTVGLDDRMEELLDLLIE-----------GPTQLSVVAILDSIGLDKTAFTAEAYNSSYVKHYF 212 (290)
Q Consensus 159 ~~~vG~e~~~~~L~~~L~~-----------~~~~~~Vi~IvGmgGiGKTTLa~~vy~d~~v~~~F 212 (290)
.++.|.+..+++|.+.+.- +-....-+-++|++|+|||+||+.+.+ .....|
T Consensus 183 ~DIgGl~~qi~~l~e~v~lpl~~p~~~~~~gi~~p~gVLL~GPPGTGKT~LAraIA~--el~~~f 245 (438)
T PTZ00361 183 ADIGGLEQQIQEIKEAVELPLTHPELYDDIGIKPPKGVILYGPPGTGKTLLAKAVAN--ETSATF 245 (438)
T ss_pred HHhcCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHH--hhCCCE
Confidence 3577888888888887642 112345577899999999999999998 444444
No 197
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=95.53 E-value=0.012 Score=44.66 Aligned_cols=22 Identities=27% Similarity=0.238 Sum_probs=19.9
Q ss_pred cEEEEEEcCCCCChhHHHHHHh
Q 047336 182 LSVVAILDSIGLDKTAFTAEAY 203 (290)
Q Consensus 182 ~~Vi~IvGmgGiGKTTLa~~vy 203 (290)
-..++|+|+.|.|||||++.+.
T Consensus 15 ge~v~I~GpSGsGKSTLl~~l~ 36 (107)
T cd00820 15 KVGVLITGDSGIGKTELALELI 36 (107)
T ss_pred CEEEEEEcCCCCCHHHHHHHhh
Confidence 4678999999999999999976
No 198
>TIGR01287 nifH nitrogenase iron protein. This model describes nitrogenase (EC 1.18.6.1) iron protein, also called nitrogenase reductase or nitrogenase component II. This model includes molybdenum-iron nitrogenase reductase (nifH), vanadium-iron nitrogenase reductase (vnfH), and iron-iron nitrogenase reductase (anfH). The model excludes the homologous protein from the light-independent protochlorophyllide reductase.
Probab=95.52 E-value=0.0088 Score=53.15 Aligned_cols=21 Identities=24% Similarity=0.260 Sum_probs=17.6
Q ss_pred EEEEEEcCCCCChhHHHHHHh
Q 047336 183 SVVAILDSIGLDKTAFTAEAY 203 (290)
Q Consensus 183 ~Vi~IvGmgGiGKTTLa~~vy 203 (290)
+.|+|+|-||+||||++..+-
T Consensus 1 ~~ia~~gKGGVGKTT~a~nLA 21 (275)
T TIGR01287 1 RQIAIYGKGGIGKSTTTQNIA 21 (275)
T ss_pred CeeEEeCCCcCcHHHHHHHHH
Confidence 468999999999999776554
No 199
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=95.52 E-value=0.022 Score=51.03 Aligned_cols=45 Identities=13% Similarity=0.182 Sum_probs=30.4
Q ss_pred cccccchhHHHHHHHHh---c-------C-C--CCcEEEEEEcCCCCChhHHHHHHhc
Q 047336 160 NTVGLDDRMEELLDLLI---E-------G-P--TQLSVVAILDSIGLDKTAFTAEAYN 204 (290)
Q Consensus 160 ~~vG~e~~~~~L~~~L~---~-------~-~--~~~~Vi~IvGmgGiGKTTLa~~vy~ 204 (290)
+++|.++.+++|.++.. . + . ....-+-++|.+|+||||+|+.+..
T Consensus 23 ~l~Gl~~vk~~i~e~~~~~~~~~~r~~~g~~~~~~~~~vll~G~pGTGKT~lA~~ia~ 80 (284)
T TIGR02880 23 ELIGLKPVKTRIREIAALLLVERLRQRLGLASAAPTLHMSFTGNPGTGKTTVALRMAQ 80 (284)
T ss_pred hccCHHHHHHHHHHHHHHHHHHHHHHHhCCCcCCCCceEEEEcCCCCCHHHHHHHHHH
Confidence 58998888887765432 1 1 0 1122466899999999999966654
No 200
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.50 E-value=0.018 Score=57.09 Aligned_cols=45 Identities=18% Similarity=0.152 Sum_probs=37.1
Q ss_pred CcccccchhHHHHHHHHhcCCCCcEEEEEEcCCCCChhHHHHHHhc
Q 047336 159 RNTVGLDDRMEELLDLLIEGPTQLSVVAILDSIGLDKTAFTAEAYN 204 (290)
Q Consensus 159 ~~~vG~e~~~~~L~~~L~~~~~~~~Vi~IvGmgGiGKTTLa~~vy~ 204 (290)
.+++|.+...+.|.+++..+.. ...+-++|+.|+||||+|+.+-+
T Consensus 15 ddVIGQe~vv~~L~~aI~~grl-~HAyLF~GPpGvGKTTlAriLAK 59 (702)
T PRK14960 15 NELVGQNHVSRALSSALERGRL-HHAYLFTGTRGVGKTTIARILAK 59 (702)
T ss_pred HHhcCcHHHHHHHHHHHHcCCC-CeEEEEECCCCCCHHHHHHHHHH
Confidence 4699999999999999986542 34667899999999999987754
No 201
>PRK10536 hypothetical protein; Provisional
Probab=95.49 E-value=0.025 Score=49.80 Aligned_cols=43 Identities=12% Similarity=0.113 Sum_probs=35.1
Q ss_pred CcccccchhHHHHHHHHhcCCCCcEEEEEEcCCCCChhHHHHHHhcc
Q 047336 159 RNTVGLDDRMEELLDLLIEGPTQLSVVAILDSIGLDKTAFTAEAYNS 205 (290)
Q Consensus 159 ~~~vG~e~~~~~L~~~L~~~~~~~~Vi~IvGmgGiGKTTLa~~vy~d 205 (290)
..+.++......+..+|... .++.+.|.+|+|||+||..+.-+
T Consensus 55 ~~i~p~n~~Q~~~l~al~~~----~lV~i~G~aGTGKT~La~a~a~~ 97 (262)
T PRK10536 55 SPILARNEAQAHYLKAIESK----QLIFATGEAGCGKTWISAAKAAE 97 (262)
T ss_pred ccccCCCHHHHHHHHHHhcC----CeEEEECCCCCCHHHHHHHHHHH
Confidence 44677888888899888753 38889999999999999887663
No 202
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=95.49 E-value=0.018 Score=56.61 Aligned_cols=45 Identities=11% Similarity=0.157 Sum_probs=36.4
Q ss_pred CcccccchhHHHHHHHHhcCCCCcEEEEEEcCCCCChhHHHHHHhc
Q 047336 159 RNTVGLDDRMEELLDLLIEGPTQLSVVAILDSIGLDKTAFTAEAYN 204 (290)
Q Consensus 159 ~~~vG~e~~~~~L~~~L~~~~~~~~Vi~IvGmgGiGKTTLa~~vy~ 204 (290)
.+++|.+..++.|.+++..+.. ...+-++|+.|+||||+|+.+-+
T Consensus 16 ~dIIGQe~iv~~L~~aI~~~rl-~hA~Lf~GP~GvGKTTlA~~lAk 60 (605)
T PRK05896 16 KQIIGQELIKKILVNAILNNKL-THAYIFSGPRGIGKTSIAKIFAK 60 (605)
T ss_pred HHhcCcHHHHHHHHHHHHcCCC-CceEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999998876531 24566899999999999988754
No 203
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=95.49 E-value=0.012 Score=44.96 Aligned_cols=21 Identities=19% Similarity=0.256 Sum_probs=19.5
Q ss_pred EEEEcCCCCChhHHHHHHhcc
Q 047336 185 VAILDSIGLDKTAFTAEAYNS 205 (290)
Q Consensus 185 i~IvGmgGiGKTTLa~~vy~d 205 (290)
|+|+|+.|+|||||...+.+.
T Consensus 2 V~iiG~~~~GKSTlin~l~~~ 22 (116)
T PF01926_consen 2 VAIIGRPNVGKSTLINALTGK 22 (116)
T ss_dssp EEEEESTTSSHHHHHHHHHTS
T ss_pred EEEECCCCCCHHHHHHHHhcc
Confidence 789999999999999999974
No 204
>PRK14493 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MoaE; Provisional
Probab=95.49 E-value=0.011 Score=52.73 Aligned_cols=22 Identities=18% Similarity=0.247 Sum_probs=20.7
Q ss_pred EEEEEEcCCCCChhHHHHHHhc
Q 047336 183 SVVAILDSIGLDKTAFTAEAYN 204 (290)
Q Consensus 183 ~Vi~IvGmgGiGKTTLa~~vy~ 204 (290)
++|+|+|..|+|||||+..+..
T Consensus 2 ~~i~i~G~~gSGKTTLi~~Li~ 23 (274)
T PRK14493 2 KVLSIVGYKATGKTTLVERLVD 23 (274)
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 5899999999999999999988
No 205
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=95.49 E-value=0.019 Score=54.00 Aligned_cols=77 Identities=14% Similarity=0.224 Sum_probs=49.0
Q ss_pred CcccccchhHHHHHHHHhcC------------CCCcEEEEEEcCCCCChhHHHHHHhccccccccC---CeeEEEECCC-
Q 047336 159 RNTVGLDDRMEELLDLLIEG------------PTQLSVVAILDSIGLDKTAFTAEAYNSSYVKHYF---DYLAWIPAPY- 222 (290)
Q Consensus 159 ~~~vG~e~~~~~L~~~L~~~------------~~~~~Vi~IvGmgGiGKTTLa~~vy~d~~v~~~F---~~~~wV~vs~- 222 (290)
..++|.+..++.+..++... +....-|-++|+.|+||||||+.+-. .....| +..-|.....
T Consensus 15 ~~IiGQe~AkkalavAl~~~~~r~~l~~~~~~e~~~~~ILliGp~G~GKT~LAr~LAk--~l~~~fi~vD~t~f~e~Gyv 92 (443)
T PRK05201 15 KYIIGQDDAKRAVAIALRNRWRRMQLPEELRDEVTPKNILMIGPTGVGKTEIARRLAK--LANAPFIKVEATKFTEVGYV 92 (443)
T ss_pred cccCCHHHHHHHHHHHHHHHHHHhcCCcccccccCCceEEEECCCCCCHHHHHHHHHH--HhCChheeecchhhccCCcc
Confidence 45899999999999888531 11246788999999999999998876 333222 3222222211
Q ss_pred CCCHHHHHHHHHHHh
Q 047336 223 QYDPDQILDTVTWLS 237 (290)
Q Consensus 223 ~~~~~~ll~~Il~~l 237 (290)
..+...+++.++...
T Consensus 93 G~d~e~~ir~L~~~A 107 (443)
T PRK05201 93 GRDVESIIRDLVEIA 107 (443)
T ss_pred cCCHHHHHHHHHHHH
Confidence 225556666655544
No 206
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=95.46 E-value=0.032 Score=49.77 Aligned_cols=25 Identities=24% Similarity=0.282 Sum_probs=21.0
Q ss_pred CCcEEEEEEcCCCCChhHHHHHHhc
Q 047336 180 TQLSVVAILDSIGLDKTAFTAEAYN 204 (290)
Q Consensus 180 ~~~~Vi~IvGmgGiGKTTLa~~vy~ 204 (290)
.+..+|.++|++|+||||++.++-.
T Consensus 70 ~~~~vi~l~G~~G~GKTTt~akLA~ 94 (272)
T TIGR00064 70 NKPNVILFVGVNGVGKTTTIAKLAN 94 (272)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHH
Confidence 3478999999999999998776654
No 207
>PLN03186 DNA repair protein RAD51 homolog; Provisional
Probab=95.46 E-value=0.04 Score=50.71 Aligned_cols=66 Identities=14% Similarity=0.101 Sum_probs=45.1
Q ss_pred HHHHHhcCCCCcEEEEEEcCCCCChhHHHHHHhccccccc----cCCeeEEEECCCCCCHHHHHHHHHHHh
Q 047336 171 LLDLLIEGPTQLSVVAILDSIGLDKTAFTAEAYNSSYVKH----YFDYLAWIPAPYQYDPDQILDTVTWLS 237 (290)
Q Consensus 171 L~~~L~~~~~~~~Vi~IvGmgGiGKTTLa~~vy~d~~v~~----~F~~~~wV~vs~~~~~~~ll~~Il~~l 237 (290)
|-+.|..+=..-.++-|.|.+|+|||+|+..+.-...... .=..++||+.-.+|++.++. +|++.+
T Consensus 112 LD~lL~GG~~~g~i~~i~G~~g~GKT~l~~~l~~~~~~~~~~gg~~g~vlyIdtE~~f~~eRl~-qia~~~ 181 (342)
T PLN03186 112 LDKILEGGIETGSITEIYGEFRTGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDTEGTFRPQRLI-QIAERF 181 (342)
T ss_pred HHHhhcCCCcCceEEEEECCCCCCccHHHHHHHHHhhcchhhCCCCceEEEEECCCCccHHHHH-HHHHHc
Confidence 3344444445678888999999999999987764322211 11368999999999988764 445544
No 208
>PRK14527 adenylate kinase; Provisional
Probab=95.45 E-value=0.013 Score=49.24 Aligned_cols=24 Identities=21% Similarity=0.160 Sum_probs=21.4
Q ss_pred CcEEEEEEcCCCCChhHHHHHHhc
Q 047336 181 QLSVVAILDSIGLDKTAFTAEAYN 204 (290)
Q Consensus 181 ~~~Vi~IvGmgGiGKTTLa~~vy~ 204 (290)
+..+|.|+|++|+||||+|+.+.+
T Consensus 5 ~~~~i~i~G~pGsGKsT~a~~La~ 28 (191)
T PRK14527 5 KNKVVIFLGPPGAGKGTQAERLAQ 28 (191)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 457899999999999999998875
No 209
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=95.45 E-value=0.014 Score=46.48 Aligned_cols=24 Identities=17% Similarity=0.191 Sum_probs=21.1
Q ss_pred cEEEEEEcCCCCChhHHHHHHhcc
Q 047336 182 LSVVAILDSIGLDKTAFTAEAYNS 205 (290)
Q Consensus 182 ~~Vi~IvGmgGiGKTTLa~~vy~d 205 (290)
..+|+++|..|+|||||+..+...
T Consensus 3 ~~~i~~~G~~g~GKttl~~~l~~~ 26 (168)
T cd04163 3 SGFVAIVGRPNVGKSTLLNALVGQ 26 (168)
T ss_pred eeEEEEECCCCCCHHHHHHHHhCC
Confidence 467999999999999999998664
No 210
>PRK12338 hypothetical protein; Provisional
Probab=95.44 E-value=0.057 Score=49.10 Aligned_cols=24 Identities=21% Similarity=0.279 Sum_probs=21.5
Q ss_pred cEEEEEEcCCCCChhHHHHHHhcc
Q 047336 182 LSVVAILDSIGLDKTAFTAEAYNS 205 (290)
Q Consensus 182 ~~Vi~IvGmgGiGKTTLa~~vy~d 205 (290)
..+|.|.|.+|+||||+|+.+-..
T Consensus 4 p~ii~i~G~sGsGKST~a~~la~~ 27 (319)
T PRK12338 4 PYVILIGSASGIGKSTIASELART 27 (319)
T ss_pred cEEEEEECCCCCCHHHHHHHHHHH
Confidence 578999999999999999988763
No 211
>PRK13531 regulatory ATPase RavA; Provisional
Probab=95.44 E-value=0.019 Score=55.00 Aligned_cols=41 Identities=15% Similarity=0.108 Sum_probs=34.8
Q ss_pred cccccchhHHHHHHHHhcCCCCcEEEEEEcCCCCChhHHHHHHhc
Q 047336 160 NTVGLDDRMEELLDLLIEGPTQLSVVAILDSIGLDKTAFTAEAYN 204 (290)
Q Consensus 160 ~~vG~e~~~~~L~~~L~~~~~~~~Vi~IvGmgGiGKTTLa~~vy~ 204 (290)
.++|+++..+.+...+..+. -+-+.|++|+|||+||+.+..
T Consensus 21 ~i~gre~vI~lll~aalag~----hVLL~GpPGTGKT~LAraLa~ 61 (498)
T PRK13531 21 GLYERSHAIRLCLLAALSGE----SVFLLGPPGIAKSLIARRLKF 61 (498)
T ss_pred hccCcHHHHHHHHHHHccCC----CEEEECCCChhHHHHHHHHHH
Confidence 48999999999888887553 355889999999999999987
No 212
>PRK13976 thymidylate kinase; Provisional
Probab=95.43 E-value=0.049 Score=46.57 Aligned_cols=50 Identities=8% Similarity=0.055 Sum_probs=30.7
Q ss_pred EEEEEcCCCCChhHHHHHHhccccccccCC--eeEEEECCCCCCHHHHHHHHHH
Q 047336 184 VVAILDSIGLDKTAFTAEAYNSSYVKHYFD--YLAWIPAPYQYDPDQILDTVTW 235 (290)
Q Consensus 184 Vi~IvGmgGiGKTTLa~~vy~d~~v~~~F~--~~~wV~vs~~~~~~~ll~~Il~ 235 (290)
.|+|-|..|+||||+++.+++. .+.+.. ...+..-+......+.+++++.
T Consensus 2 fIv~EGiDGsGKsTq~~~L~~~--L~~~~g~~~v~~~~eP~~~~~g~~ir~~l~ 53 (209)
T PRK13976 2 FITFEGIDGSGKTTQSRLLAEY--LSDIYGENNVVLTREPGGTSFNELVRGLLL 53 (209)
T ss_pred EEEEECCCCCCHHHHHHHHHHH--HHHhcCCcceEEeeCCCCCHHHHHHHHHHc
Confidence 5889999999999999999983 333211 2233333333334455555543
No 213
>PRK12608 transcription termination factor Rho; Provisional
Probab=95.43 E-value=0.026 Score=52.27 Aligned_cols=71 Identities=11% Similarity=-0.044 Sum_probs=48.3
Q ss_pred hHHHHHHHHhcCCCCcEEEEEEcCCCCChhHHHHHHhccccccc-cCCe-eEEEECCCCC-CHHHHHHHHHHHhhhc
Q 047336 167 RMEELLDLLIEGPTQLSVVAILDSIGLDKTAFTAEAYNSSYVKH-YFDY-LAWIPAPYQY-DPDQILDTVTWLSRRN 240 (290)
Q Consensus 167 ~~~~L~~~L~~~~~~~~Vi~IvGmgGiGKTTLa~~vy~d~~v~~-~F~~-~~wV~vs~~~-~~~~ll~~Il~~l~~~ 240 (290)
-..++++.+.--. +-.-+.|+|..|+|||||++.+.+. +.. +=+. ++|+.+.+.. ++.++++.+...+...
T Consensus 119 ~~~RvID~l~PiG-kGQR~LIvG~pGtGKTTLl~~la~~--i~~~~~dv~~vv~lIgER~~EV~df~~~i~~~Vvas 192 (380)
T PRK12608 119 LSMRVVDLVAPIG-KGQRGLIVAPPRAGKTVLLQQIAAA--VAANHPEVHLMVLLIDERPEEVTDMRRSVKGEVYAS 192 (380)
T ss_pred hhHhhhhheeecC-CCceEEEECCCCCCHHHHHHHHHHH--HHhcCCCceEEEEEecCCCCCHHHHHHHHhhhEEee
Confidence 3345677665311 2345689999999999999998773 222 2234 5788887655 6788999988766643
No 214
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=95.42 E-value=0.0092 Score=48.64 Aligned_cols=21 Identities=14% Similarity=0.110 Sum_probs=17.3
Q ss_pred EEEEcCCCCChhHHHHHHhcc
Q 047336 185 VAILDSIGLDKTAFTAEAYNS 205 (290)
Q Consensus 185 i~IvGmgGiGKTTLa~~vy~d 205 (290)
|+|.|..|+|||||++.+...
T Consensus 2 I~i~G~~stGKTTL~~~L~~~ 22 (163)
T PF13521_consen 2 IVITGGPSTGKTTLIEALAAR 22 (163)
T ss_dssp EEEE--TTSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHc
Confidence 789999999999999999873
No 215
>PRK04182 cytidylate kinase; Provisional
Probab=95.42 E-value=0.012 Score=48.36 Aligned_cols=22 Identities=18% Similarity=0.190 Sum_probs=20.3
Q ss_pred EEEEEcCCCCChhHHHHHHhcc
Q 047336 184 VVAILDSIGLDKTAFTAEAYNS 205 (290)
Q Consensus 184 Vi~IvGmgGiGKTTLa~~vy~d 205 (290)
+|.|.|+.|+||||+|+.+-+.
T Consensus 2 ~I~i~G~~GsGKstia~~la~~ 23 (180)
T PRK04182 2 IITISGPPGSGKTTVARLLAEK 23 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 7899999999999999999873
No 216
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.42 E-value=0.14 Score=48.01 Aligned_cols=24 Identities=21% Similarity=0.256 Sum_probs=20.5
Q ss_pred CcEEEEEEcCCCCChhHHHHHHhc
Q 047336 181 QLSVVAILDSIGLDKTAFTAEAYN 204 (290)
Q Consensus 181 ~~~Vi~IvGmgGiGKTTLa~~vy~ 204 (290)
...+|.++|+.|+||||.+.++-.
T Consensus 173 ~~~vi~lvGptGvGKTTT~aKLA~ 196 (388)
T PRK12723 173 KKRVFILVGPTGVGKTTTIAKLAA 196 (388)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 467999999999999998877755
No 217
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=95.41 E-value=0.012 Score=51.18 Aligned_cols=23 Identities=26% Similarity=0.199 Sum_probs=20.4
Q ss_pred cEEEEEEcCCCCChhHHHHHHhc
Q 047336 182 LSVVAILDSIGLDKTAFTAEAYN 204 (290)
Q Consensus 182 ~~Vi~IvGmgGiGKTTLa~~vy~ 204 (290)
=..++|+|+.|+|||||.+.|--
T Consensus 29 GEfvsilGpSGcGKSTLLriiAG 51 (248)
T COG1116 29 GEFVAILGPSGCGKSTLLRLIAG 51 (248)
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 45899999999999999999854
No 218
>cd03116 MobB Molybdenum is an essential trace element in the form of molybdenum cofactor (Moco) which is associated with the metabolism of nitrogen, carbon and sulfur by redox active enzymes. In E. coli, the synthesis of Moco involves genes from several loci: moa, mob, mod, moe and mog. The mob locus contains mobA and mobB genes. MobB catalyzes the attachment of the guanine dinucleotide to molybdopterin.
Probab=95.41 E-value=0.013 Score=47.83 Aligned_cols=22 Identities=18% Similarity=0.249 Sum_probs=20.7
Q ss_pred EEEEEEcCCCCChhHHHHHHhc
Q 047336 183 SVVAILDSIGLDKTAFTAEAYN 204 (290)
Q Consensus 183 ~Vi~IvGmgGiGKTTLa~~vy~ 204 (290)
.+++|+|..|+|||||+..+..
T Consensus 2 ~vi~i~G~~gsGKTTli~~L~~ 23 (159)
T cd03116 2 KVIGFVGYSGSGKTTLLEKLIP 23 (159)
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5899999999999999999987
No 219
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=95.41 E-value=0.012 Score=51.72 Aligned_cols=24 Identities=17% Similarity=0.152 Sum_probs=22.0
Q ss_pred CcEEEEEEcCCCCChhHHHHHHhc
Q 047336 181 QLSVVAILDSIGLDKTAFTAEAYN 204 (290)
Q Consensus 181 ~~~Vi~IvGmgGiGKTTLa~~vy~ 204 (290)
+=.+++|+|+.|+|||||.+.++.
T Consensus 27 ~G~i~~iiGpNG~GKSTLLk~l~g 50 (258)
T COG1120 27 KGEITGILGPNGSGKSTLLKCLAG 50 (258)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhc
Confidence 357899999999999999999987
No 220
>PRK06620 hypothetical protein; Validated
Probab=95.41 E-value=0.032 Score=47.89 Aligned_cols=24 Identities=25% Similarity=0.007 Sum_probs=20.9
Q ss_pred EEEEEEcCCCCChhHHHHHHhccc
Q 047336 183 SVVAILDSIGLDKTAFTAEAYNSS 206 (290)
Q Consensus 183 ~Vi~IvGmgGiGKTTLa~~vy~d~ 206 (290)
+.+-|+|+.|+|||+|++.+.+..
T Consensus 45 ~~l~l~Gp~G~GKThLl~a~~~~~ 68 (214)
T PRK06620 45 FTLLIKGPSSSGKTYLTKIWQNLS 68 (214)
T ss_pred ceEEEECCCCCCHHHHHHHHHhcc
Confidence 568899999999999999987743
No 221
>TIGR02239 recomb_RAD51 DNA repair protein RAD51. This eukaryotic sequence family consists of RAD51, a protein involved in DNA homologous recombination and repair. It is similar in sequence the exclusively meiotic recombinase DMC1 (TIGR02238), to archaeal families RadA (TIGR02236) and RadB (TIGR02237), and to bacterial RecA (TIGR02012).
Probab=95.40 E-value=0.046 Score=49.82 Aligned_cols=59 Identities=17% Similarity=0.133 Sum_probs=41.0
Q ss_pred HHHHHhcCCCCcEEEEEEcCCCCChhHHHHHHhccccccc----cCCeeEEEECCCCCCHHHH
Q 047336 171 LLDLLIEGPTQLSVVAILDSIGLDKTAFTAEAYNSSYVKH----YFDYLAWIPAPYQYDPDQI 229 (290)
Q Consensus 171 L~~~L~~~~~~~~Vi~IvGmgGiGKTTLa~~vy~d~~v~~----~F~~~~wV~vs~~~~~~~l 229 (290)
|-.+|..+=..-.++-|.|.+|+|||||+..+.-...... .-..++||+-...|+..++
T Consensus 85 lD~ll~gGi~~g~i~~i~G~~g~GKT~l~~~~~~~~~~~~~~Gg~~~~vvyIdtE~~f~~~Rl 147 (316)
T TIGR02239 85 LDKLLGGGIETGSITEIFGEFRTGKTQLCHTLAVTCQLPIDQGGGEGKALYIDTEGTFRPERL 147 (316)
T ss_pred HHHHhcCCCCCCeEEEEECCCCCCcCHHHHHHHHHHhhhhhcCCCCceEEEEECCCCCCHHHH
Confidence 3344445545688999999999999999988764222211 1235799998888887764
No 222
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=95.40 E-value=0.018 Score=48.75 Aligned_cols=22 Identities=18% Similarity=0.240 Sum_probs=19.0
Q ss_pred EEEEEEcCCCCChhHHHHHHhc
Q 047336 183 SVVAILDSIGLDKTAFTAEAYN 204 (290)
Q Consensus 183 ~Vi~IvGmgGiGKTTLa~~vy~ 204 (290)
.+|.|+|+.|+||||++..+..
T Consensus 2 GlilI~GptGSGKTTll~~ll~ 23 (198)
T cd01131 2 GLVLVTGPTGSGKSTTLAAMID 23 (198)
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 3688999999999999987655
No 223
>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1. This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.
Probab=95.39 E-value=0.047 Score=49.69 Aligned_cols=64 Identities=16% Similarity=0.199 Sum_probs=43.5
Q ss_pred HHHhcCCCCcEEEEEEcCCCCChhHHHHHHhccccccc----cCCeeEEEECCCCCCHHHHHHHHHHHh
Q 047336 173 DLLIEGPTQLSVVAILDSIGLDKTAFTAEAYNSSYVKH----YFDYLAWIPAPYQYDPDQILDTVTWLS 237 (290)
Q Consensus 173 ~~L~~~~~~~~Vi~IvGmgGiGKTTLa~~vy~d~~v~~----~F~~~~wV~vs~~~~~~~ll~~Il~~l 237 (290)
++|..+=+.-+++=|+|.+|+|||+|+..+.-...... .=..++||+.-.+|++.++.+ +++.+
T Consensus 87 ~lLgGGi~~G~iteI~G~~GsGKTql~lqla~~~~~~~~~gg~~~~vvYIdtE~~f~~eRi~~-~a~~~ 154 (313)
T TIGR02238 87 GILGGGIESMSITEVFGEFRCGKTQLSHTLCVTAQLPREMGGGNGKVAYIDTEGTFRPDRIRA-IAERF 154 (313)
T ss_pred HHhCCCCcCCeEEEEECCCCCCcCHHHHHHHHHHhcchhhcCCCCeEEEEEcCCCCCHHHHHH-HHHHc
Confidence 34444445678999999999999999977543222211 113689999999999888754 44444
No 224
>PRK08356 hypothetical protein; Provisional
Probab=95.38 E-value=0.014 Score=49.26 Aligned_cols=21 Identities=19% Similarity=0.199 Sum_probs=19.3
Q ss_pred cEEEEEEcCCCCChhHHHHHH
Q 047336 182 LSVVAILDSIGLDKTAFTAEA 202 (290)
Q Consensus 182 ~~Vi~IvGmgGiGKTTLa~~v 202 (290)
..+|.|.|++|+||||+|+.+
T Consensus 5 ~~~i~~~G~~gsGK~t~a~~l 25 (195)
T PRK08356 5 KMIVGVVGKIAAGKTTVAKFF 25 (195)
T ss_pred cEEEEEECCCCCCHHHHHHHH
Confidence 367999999999999999999
No 225
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=95.37 E-value=0.033 Score=43.57 Aligned_cols=46 Identities=17% Similarity=0.185 Sum_probs=35.3
Q ss_pred CcccccchhHHHHHHHHhc-----CCCCcEEEEEEcCCCCChhHHHHHHhc
Q 047336 159 RNTVGLDDRMEELLDLLIE-----GPTQLSVVAILDSIGLDKTAFTAEAYN 204 (290)
Q Consensus 159 ~~~vG~e~~~~~L~~~L~~-----~~~~~~Vi~IvGmgGiGKTTLa~~vy~ 204 (290)
.+++|..-..+.+++.+.+ .+.+.-|++..|..|+|||.+++.+-+
T Consensus 25 ~~l~GQhla~~~v~~ai~~~l~~~~p~KpLVlSfHG~tGtGKn~v~~liA~ 75 (127)
T PF06309_consen 25 RNLFGQHLAVEVVVNAIKGHLANPNPRKPLVLSFHGWTGTGKNFVSRLIAE 75 (127)
T ss_pred HHccCcHHHHHHHHHHHHHHHcCCCCCCCEEEEeecCCCCcHHHHHHHHHH
Confidence 4578887777777777653 356789999999999999996665543
No 226
>PLN02796 D-glycerate 3-kinase
Probab=95.37 E-value=0.014 Score=53.49 Aligned_cols=25 Identities=20% Similarity=0.127 Sum_probs=22.7
Q ss_pred CCcEEEEEEcCCCCChhHHHHHHhc
Q 047336 180 TQLSVVAILDSIGLDKTAFTAEAYN 204 (290)
Q Consensus 180 ~~~~Vi~IvGmgGiGKTTLa~~vy~ 204 (290)
...-+|+|.|..|+|||||++.+..
T Consensus 98 ~~pliIGI~G~sGSGKSTLa~~L~~ 122 (347)
T PLN02796 98 IPPLVIGISAPQGCGKTTLVFALVY 122 (347)
T ss_pred CCCEEEEEECCCCCcHHHHHHHHHH
Confidence 3578999999999999999999987
No 227
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=95.35 E-value=0.013 Score=50.05 Aligned_cols=23 Identities=22% Similarity=0.133 Sum_probs=21.0
Q ss_pred cEEEEEEcCCCCChhHHHHHHhc
Q 047336 182 LSVVAILDSIGLDKTAFTAEAYN 204 (290)
Q Consensus 182 ~~Vi~IvGmgGiGKTTLa~~vy~ 204 (290)
=.+++|+|..|.|||||++.+..
T Consensus 30 G~~~~l~G~nGsGKSTLl~~i~G 52 (218)
T cd03255 30 GEFVAIVGPSGSGKSTLLNILGG 52 (218)
T ss_pred CCEEEEEcCCCCCHHHHHHHHhC
Confidence 45899999999999999999976
No 228
>TIGR02173 cyt_kin_arch cytidylate kinase, putative. Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by TIGR00017.
Probab=95.35 E-value=0.013 Score=47.70 Aligned_cols=21 Identities=19% Similarity=0.202 Sum_probs=19.8
Q ss_pred EEEEEcCCCCChhHHHHHHhc
Q 047336 184 VVAILDSIGLDKTAFTAEAYN 204 (290)
Q Consensus 184 Vi~IvGmgGiGKTTLa~~vy~ 204 (290)
+|.|.|+.|+||||+|+.+-+
T Consensus 2 iI~i~G~~GSGKstia~~la~ 22 (171)
T TIGR02173 2 IITISGPPGSGKTTVAKILAE 22 (171)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 799999999999999999976
No 229
>PRK13230 nitrogenase reductase-like protein; Reviewed
Probab=95.33 E-value=0.013 Score=52.32 Aligned_cols=20 Identities=10% Similarity=0.145 Sum_probs=17.4
Q ss_pred EEEEEEcCCCCChhHHHHHH
Q 047336 183 SVVAILDSIGLDKTAFTAEA 202 (290)
Q Consensus 183 ~Vi~IvGmgGiGKTTLa~~v 202 (290)
.+|+|+|-||+||||+|-.+
T Consensus 2 ~~i~~~gKGGVGKTT~a~nL 21 (279)
T PRK13230 2 RKFCFYGKGGIGKSTTVCNI 21 (279)
T ss_pred cEEEEECCCCCcHHHHHHHH
Confidence 57999999999999977664
No 230
>PLN02200 adenylate kinase family protein
Probab=95.32 E-value=0.016 Score=50.50 Aligned_cols=24 Identities=13% Similarity=0.073 Sum_probs=21.4
Q ss_pred CcEEEEEEcCCCCChhHHHHHHhc
Q 047336 181 QLSVVAILDSIGLDKTAFTAEAYN 204 (290)
Q Consensus 181 ~~~Vi~IvGmgGiGKTTLa~~vy~ 204 (290)
...+|.|.|++|+||||+|+.+-.
T Consensus 42 ~~~ii~I~G~PGSGKsT~a~~La~ 65 (234)
T PLN02200 42 TPFITFVLGGPGSGKGTQCEKIVE 65 (234)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 467899999999999999998876
No 231
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=95.32 E-value=0.013 Score=47.75 Aligned_cols=25 Identities=16% Similarity=0.078 Sum_probs=21.9
Q ss_pred CcEEEEEEcCCCCChhHHHHHHhcc
Q 047336 181 QLSVVAILDSIGLDKTAFTAEAYNS 205 (290)
Q Consensus 181 ~~~Vi~IvGmgGiGKTTLa~~vy~d 205 (290)
+...|+|+|..|+|||||.+.+.+.
T Consensus 13 ~~~~v~i~G~~g~GKStLl~~l~~~ 37 (173)
T cd04155 13 EEPRILILGLDNAGKTTILKQLASE 37 (173)
T ss_pred CccEEEEEccCCCCHHHHHHHHhcC
Confidence 3556899999999999999999884
No 232
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.32 E-value=0.02 Score=55.18 Aligned_cols=44 Identities=16% Similarity=0.197 Sum_probs=35.5
Q ss_pred CcccccchhHHHHHHHHhcCCCCcE-EEEEEcCCCCChhHHHHHHhc
Q 047336 159 RNTVGLDDRMEELLDLLIEGPTQLS-VVAILDSIGLDKTAFTAEAYN 204 (290)
Q Consensus 159 ~~~vG~e~~~~~L~~~L~~~~~~~~-Vi~IvGmgGiGKTTLa~~vy~ 204 (290)
.++||.+.-.+.|.+.+..+. +. -+-++|+.|+||||+|+.+-.
T Consensus 13 ~dliGQe~vv~~L~~a~~~~r--i~ha~Lf~Gp~G~GKTT~ArilAk 57 (491)
T PRK14964 13 KDLVGQDVLVRILRNAFTLNK--IPQSILLVGASGVGKTTCARIISL 57 (491)
T ss_pred HHhcCcHHHHHHHHHHHHcCC--CCceEEEECCCCccHHHHHHHHHH
Confidence 468999999998888887654 33 577899999999999987743
No 233
>PRK09825 idnK D-gluconate kinase; Provisional
Probab=95.32 E-value=0.013 Score=48.64 Aligned_cols=23 Identities=9% Similarity=0.076 Sum_probs=20.8
Q ss_pred EEEEEEcCCCCChhHHHHHHhcc
Q 047336 183 SVVAILDSIGLDKTAFTAEAYNS 205 (290)
Q Consensus 183 ~Vi~IvGmgGiGKTTLa~~vy~d 205 (290)
.++.|+|..|.|||||++.+..-
T Consensus 4 e~i~l~G~sGsGKSTl~~~la~~ 26 (176)
T PRK09825 4 ESYILMGVSGSGKSLIGSKIAAL 26 (176)
T ss_pred cEEEEECCCCCCHHHHHHHHHHh
Confidence 47899999999999999999873
No 234
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=95.32 E-value=0.014 Score=49.66 Aligned_cols=23 Identities=17% Similarity=0.098 Sum_probs=21.2
Q ss_pred cEEEEEEcCCCCChhHHHHHHhc
Q 047336 182 LSVVAILDSIGLDKTAFTAEAYN 204 (290)
Q Consensus 182 ~~Vi~IvGmgGiGKTTLa~~vy~ 204 (290)
-.+++|+|..|.|||||++.+..
T Consensus 27 G~~~~l~G~nGsGKSTLl~~l~G 49 (211)
T cd03225 27 GEFVLIVGPNGSGKSTLLRLLNG 49 (211)
T ss_pred CcEEEEECCCCCCHHHHHHHHhc
Confidence 46899999999999999999976
No 235
>cd01862 Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-
Probab=95.31 E-value=0.014 Score=47.37 Aligned_cols=22 Identities=32% Similarity=0.401 Sum_probs=19.2
Q ss_pred EEEEEcCCCCChhHHHHHHhcc
Q 047336 184 VVAILDSIGLDKTAFTAEAYNS 205 (290)
Q Consensus 184 Vi~IvGmgGiGKTTLa~~vy~d 205 (290)
-|+|+|.+|+|||||++.+.++
T Consensus 2 ki~viG~~~~GKSsl~~~l~~~ 23 (172)
T cd01862 2 KVIILGDSGVGKTSLMNQYVNK 23 (172)
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999888764
No 236
>PF08298 AAA_PrkA: PrkA AAA domain; InterPro: IPR013153 This is entry is found at the N terminus of PrkA proteins - bacterial and archaeal serine kinases approximately 630 residues in length. PrkA possesses the A-motif of nucleotide-binding proteins and exhibits distant homology to eukaryotic protein kinases []. Note that many of these are hypothetical.
Probab=95.31 E-value=0.025 Score=51.78 Aligned_cols=47 Identities=13% Similarity=0.324 Sum_probs=41.6
Q ss_pred CCcccccchhHHHHHHHHhcC----CCCcEEEEEEcCCCCChhHHHHHHhc
Q 047336 158 NRNTVGLDDRMEELLDLLIEG----PTQLSVVAILDSIGLDKTAFTAEAYN 204 (290)
Q Consensus 158 ~~~~vG~e~~~~~L~~~L~~~----~~~~~Vi~IvGmgGiGKTTLa~~vy~ 204 (290)
+.+++|+++..+++++.+... +..-+|+-.+|+.|.||||||..+-+
T Consensus 60 ~~~~~G~~~~i~~lV~~fk~AA~g~~~~krIl~L~GPvg~GKSsl~~~Lk~ 110 (358)
T PF08298_consen 60 EDEFYGMEETIERLVNYFKSAAQGLEERKRILLLLGPVGGGKSSLAELLKR 110 (358)
T ss_pred cccccCcHHHHHHHHHHHHHHHhccCccceEEEEECCCCCCHHHHHHHHHH
Confidence 357999999999999999752 56789999999999999999999887
No 237
>PRK01184 hypothetical protein; Provisional
Probab=95.30 E-value=0.014 Score=48.47 Aligned_cols=19 Identities=16% Similarity=0.351 Sum_probs=17.1
Q ss_pred EEEEEEcCCCCChhHHHHH
Q 047336 183 SVVAILDSIGLDKTAFTAE 201 (290)
Q Consensus 183 ~Vi~IvGmgGiGKTTLa~~ 201 (290)
.+|+|+|++|+||||+++.
T Consensus 2 ~~i~l~G~~GsGKsT~a~~ 20 (184)
T PRK01184 2 KIIGVVGMPGSGKGEFSKI 20 (184)
T ss_pred cEEEEECCCCCCHHHHHHH
Confidence 4899999999999999873
No 238
>cd02117 NifH_like This family contains the NifH (iron protein) of nitrogenase, L subunit (BchL/ChlL) of the protochlorophyllide reductase and the BchX subunit of the Chlorophyllide reductase. Members of this family use energey from ATP hydrolysis and transfer electrons through a Fe4-S4 cluster to other subunit for reduction of substrate.
Probab=95.30 E-value=0.012 Score=50.13 Aligned_cols=20 Identities=20% Similarity=0.287 Sum_probs=17.0
Q ss_pred EEEEEEcCCCCChhHHHHHH
Q 047336 183 SVVAILDSIGLDKTAFTAEA 202 (290)
Q Consensus 183 ~Vi~IvGmgGiGKTTLa~~v 202 (290)
++|+|.|-||+||||++-.+
T Consensus 1 ~~iav~gKGGvGKTt~~~nL 20 (212)
T cd02117 1 RQIAIYGKGGIGKSTTSQNL 20 (212)
T ss_pred CEEEEECCCcCcHHHHHHHH
Confidence 47999999999999976654
No 239
>PLN02674 adenylate kinase
Probab=95.30 E-value=0.11 Score=45.39 Aligned_cols=23 Identities=9% Similarity=0.027 Sum_probs=20.1
Q ss_pred cEEEEEEcCCCCChhHHHHHHhc
Q 047336 182 LSVVAILDSIGLDKTAFTAEAYN 204 (290)
Q Consensus 182 ~~Vi~IvGmgGiGKTTLa~~vy~ 204 (290)
...|-|.|++|+||||+|+.+-.
T Consensus 31 ~~~i~l~G~PGsGKgT~a~~La~ 53 (244)
T PLN02674 31 DKRLILIGPPGSGKGTQSPIIKD 53 (244)
T ss_pred CceEEEECCCCCCHHHHHHHHHH
Confidence 45577999999999999998876
No 240
>PRK12339 2-phosphoglycerate kinase; Provisional
Probab=95.29 E-value=0.016 Score=49.15 Aligned_cols=24 Identities=17% Similarity=0.088 Sum_probs=21.7
Q ss_pred cEEEEEEcCCCCChhHHHHHHhcc
Q 047336 182 LSVVAILDSIGLDKTAFTAEAYNS 205 (290)
Q Consensus 182 ~~Vi~IvGmgGiGKTTLa~~vy~d 205 (290)
..+|.|.|++|+||||+|+.+...
T Consensus 3 ~~~i~i~G~~G~GKst~a~~l~~~ 26 (197)
T PRK12339 3 STIHFIGGIPGVGKTSISGYIARH 26 (197)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHh
Confidence 568999999999999999999873
No 241
>TIGR00231 small_GTP small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.
Probab=95.29 E-value=0.015 Score=45.66 Aligned_cols=23 Identities=9% Similarity=0.203 Sum_probs=20.4
Q ss_pred EEEEEcCCCCChhHHHHHHhccc
Q 047336 184 VVAILDSIGLDKTAFTAEAYNSS 206 (290)
Q Consensus 184 Vi~IvGmgGiGKTTLa~~vy~d~ 206 (290)
-|+++|..|+|||||+..+....
T Consensus 3 ki~~~G~~~~GKstl~~~l~~~~ 25 (161)
T TIGR00231 3 KIVIVGDPNVGKSTLLNRLLGNK 25 (161)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57899999999999999888755
No 242
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=95.28 E-value=0.015 Score=46.81 Aligned_cols=21 Identities=14% Similarity=0.248 Sum_probs=18.7
Q ss_pred EEEEcCCCCChhHHHHHHhcc
Q 047336 185 VAILDSIGLDKTAFTAEAYNS 205 (290)
Q Consensus 185 i~IvGmgGiGKTTLa~~vy~d 205 (290)
|.++|.+|+|||||+..+.+.
T Consensus 3 i~~vG~~~vGKTsli~~l~~~ 23 (168)
T cd04119 3 VISMGNSGVGKSCIIKRYCEG 23 (168)
T ss_pred EEEECCCCCCHHHHHHHHHhC
Confidence 679999999999999988764
No 243
>PRK13232 nifH nitrogenase reductase; Reviewed
Probab=95.27 E-value=0.013 Score=52.10 Aligned_cols=21 Identities=24% Similarity=0.259 Sum_probs=17.8
Q ss_pred EEEEEEcCCCCChhHHHHHHh
Q 047336 183 SVVAILDSIGLDKTAFTAEAY 203 (290)
Q Consensus 183 ~Vi~IvGmgGiGKTTLa~~vy 203 (290)
++|+|+|-||+||||++-.+-
T Consensus 2 ~~iav~gKGGVGKTT~a~nLA 22 (273)
T PRK13232 2 RQIAIYGKGGIGKSTTTQNLT 22 (273)
T ss_pred CEEEEECCCCCcHHHHHHHHH
Confidence 579999999999999877653
No 244
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=95.26 E-value=0.014 Score=49.75 Aligned_cols=23 Identities=17% Similarity=0.206 Sum_probs=21.1
Q ss_pred cEEEEEEcCCCCChhHHHHHHhc
Q 047336 182 LSVVAILDSIGLDKTAFTAEAYN 204 (290)
Q Consensus 182 ~~Vi~IvGmgGiGKTTLa~~vy~ 204 (290)
-.+++|+|..|.|||||++.+..
T Consensus 29 Ge~~~i~G~nGsGKSTLl~~l~G 51 (216)
T TIGR00960 29 GEMVFLVGHSGAGKSTFLKLILG 51 (216)
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 46899999999999999999987
No 245
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=95.26 E-value=0.015 Score=46.92 Aligned_cols=22 Identities=27% Similarity=0.362 Sum_probs=19.0
Q ss_pred EEEEEcCCCCChhHHHHHHhcc
Q 047336 184 VVAILDSIGLDKTAFTAEAYNS 205 (290)
Q Consensus 184 Vi~IvGmgGiGKTTLa~~vy~d 205 (290)
-|.|+|.+|+|||||++.+.+.
T Consensus 2 ki~v~G~~~~GKTsli~~~~~~ 23 (164)
T smart00173 2 KLVVLGSGGVGKSALTIQFVQG 23 (164)
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4789999999999999888653
No 246
>PLN03187 meiotic recombination protein DMC1 homolog; Provisional
Probab=95.26 E-value=0.05 Score=50.08 Aligned_cols=62 Identities=15% Similarity=0.138 Sum_probs=43.2
Q ss_pred HhcCCCCcEEEEEEcCCCCChhHHHHHHhccccccc----cCCeeEEEECCCCCCHHHHHHHHHHHh
Q 047336 175 LIEGPTQLSVVAILDSIGLDKTAFTAEAYNSSYVKH----YFDYLAWIPAPYQYDPDQILDTVTWLS 237 (290)
Q Consensus 175 L~~~~~~~~Vi~IvGmgGiGKTTLa~~vy~d~~v~~----~F~~~~wV~vs~~~~~~~ll~~Il~~l 237 (290)
|..+=..-+++=|.|.+|+|||+|+..+.=+..... .=...+||+.-.+|++.++.+ |.+.+
T Consensus 119 LgGGi~~G~ItEI~G~~GsGKTql~lqlav~~qlp~~~gg~~~~vvyIdTE~tF~peRl~~-ia~~~ 184 (344)
T PLN03187 119 LGGGIETRCITEAFGEFRSGKTQLAHTLCVTTQLPTEMGGGNGKVAYIDTEGTFRPDRIVP-IAERF 184 (344)
T ss_pred cCCCCCCCeEEEEecCCCCChhHHHHHHHHHHhcchhhCCCCceEEEEEcCCCCCHHHHHH-HHHHc
Confidence 444445678888999999999999987753222211 124689999999999888765 44444
No 247
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=95.26 E-value=0.081 Score=46.67 Aligned_cols=50 Identities=14% Similarity=0.092 Sum_probs=33.3
Q ss_pred CcEEEEEEcCCCCChhHHHHHHhccccccccCCeeEEEECCCCCCHHHHHHHHHHHhh
Q 047336 181 QLSVVAILDSIGLDKTAFTAEAYNSSYVKHYFDYLAWIPAPYQYDPDQILDTVTWLSR 238 (290)
Q Consensus 181 ~~~Vi~IvGmgGiGKTTLa~~vy~d~~v~~~F~~~~wV~vs~~~~~~~ll~~Il~~l~ 238 (290)
...-+.++|.+|+|||.||..+-+. +...=-.+.+++ ..++.+++-....
T Consensus 104 ~~~nl~l~G~~G~GKThLa~Ai~~~--l~~~g~sv~f~~------~~el~~~Lk~~~~ 153 (254)
T COG1484 104 RGENLVLLGPPGVGKTHLAIAIGNE--LLKAGISVLFIT------APDLLSKLKAAFD 153 (254)
T ss_pred cCCcEEEECCCCCcHHHHHHHHHHH--HHHcCCeEEEEE------HHHHHHHHHHHHh
Confidence 4556789999999999999999984 333212345555 4456666554443
No 248
>PRK14737 gmk guanylate kinase; Provisional
Probab=95.24 E-value=0.023 Score=47.63 Aligned_cols=25 Identities=12% Similarity=0.101 Sum_probs=22.3
Q ss_pred CcEEEEEEcCCCCChhHHHHHHhcc
Q 047336 181 QLSVVAILDSIGLDKTAFTAEAYNS 205 (290)
Q Consensus 181 ~~~Vi~IvGmgGiGKTTLa~~vy~d 205 (290)
+..+|.|+|+.|+|||||++.+...
T Consensus 3 ~~~~ivl~GpsG~GK~tl~~~l~~~ 27 (186)
T PRK14737 3 SPKLFIISSVAGGGKSTIIQALLEE 27 (186)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhc
Confidence 4678999999999999999999873
No 249
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=95.24 E-value=0.015 Score=48.60 Aligned_cols=23 Identities=22% Similarity=0.250 Sum_probs=20.9
Q ss_pred cEEEEEEcCCCCChhHHHHHHhc
Q 047336 182 LSVVAILDSIGLDKTAFTAEAYN 204 (290)
Q Consensus 182 ~~Vi~IvGmgGiGKTTLa~~vy~ 204 (290)
-.+++|+|..|.|||||.+.+..
T Consensus 18 Ge~~~i~G~nGsGKSTLl~~i~G 40 (190)
T TIGR01166 18 GEVLALLGANGAGKSTLLLHLNG 40 (190)
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 45899999999999999999876
No 250
>cd02040 NifH NifH gene encodes component II (iron protein) of nitrogenase. Nitrogenase is responsible for the biological nitrogen fixation, i.e. reduction of molecular nitrogen to ammonia. NifH consists of two oxygen-sensitive metallosulfur proteins: the mollybdenum-iron (alternatively, vanadium-iron or iron-iron) protein (commonly referred to as component 1), and the iron protein (commonly referred to as component 2). The iron protein is a homodimer, with an Fe4S4 cluster bound between the subunits and two ATP-binding domains. It supplies energy by ATP hydrolysis, and transfers electrons from reduced ferredoxin or flavodoxin to component 1 for the reduction of molecular nitrogen to ammonia.
Probab=95.24 E-value=0.014 Score=51.56 Aligned_cols=22 Identities=23% Similarity=0.243 Sum_probs=18.2
Q ss_pred EEEEEEcCCCCChhHHHHHHhc
Q 047336 183 SVVAILDSIGLDKTAFTAEAYN 204 (290)
Q Consensus 183 ~Vi~IvGmgGiGKTTLa~~vy~ 204 (290)
++|+|.|-||+||||++-.+-.
T Consensus 2 ~~iav~~KGGvGKTT~~~nLA~ 23 (270)
T cd02040 2 RQIAIYGKGGIGKSTTTQNLSA 23 (270)
T ss_pred cEEEEEeCCcCCHHHHHHHHHH
Confidence 5788999999999998876543
No 251
>PRK09087 hypothetical protein; Validated
Probab=95.23 E-value=0.015 Score=50.42 Aligned_cols=24 Identities=21% Similarity=0.231 Sum_probs=21.2
Q ss_pred cEEEEEEcCCCCChhHHHHHHhcc
Q 047336 182 LSVVAILDSIGLDKTAFTAEAYNS 205 (290)
Q Consensus 182 ~~Vi~IvGmgGiGKTTLa~~vy~d 205 (290)
-+.+.|+|..|+|||+|++.+++.
T Consensus 44 ~~~l~l~G~~GsGKThLl~~~~~~ 67 (226)
T PRK09087 44 SPVVVLAGPVGSGKTHLASIWREK 67 (226)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHh
Confidence 466899999999999999998864
No 252
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=95.23 E-value=0.015 Score=54.28 Aligned_cols=24 Identities=21% Similarity=0.322 Sum_probs=21.0
Q ss_pred CcEEEEEEcCCCCChhHHHHHHhc
Q 047336 181 QLSVVAILDSIGLDKTAFTAEAYN 204 (290)
Q Consensus 181 ~~~Vi~IvGmgGiGKTTLa~~vy~ 204 (290)
+..+|+++|.+|+||||++..+..
T Consensus 240 ~~~vI~LVGptGvGKTTTiaKLA~ 263 (436)
T PRK11889 240 EVQTIALIGPTGVGKTTTLAKMAW 263 (436)
T ss_pred CCcEEEEECCCCCcHHHHHHHHHH
Confidence 457999999999999999988865
No 253
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.23 E-value=0.016 Score=49.39 Aligned_cols=24 Identities=17% Similarity=0.238 Sum_probs=22.0
Q ss_pred CCcEEEEEEcCCCCChhHHHHHHhc
Q 047336 180 TQLSVVAILDSIGLDKTAFTAEAYN 204 (290)
Q Consensus 180 ~~~~Vi~IvGmgGiGKTTLa~~vy~ 204 (290)
.. .+++|+|..|.|||||++.+..
T Consensus 22 ~~-e~~~i~G~nGsGKSTLl~~l~G 45 (214)
T cd03297 22 NE-EVTGIFGASGAGKSTLLRCIAG 45 (214)
T ss_pred cc-eeEEEECCCCCCHHHHHHHHhC
Confidence 45 8999999999999999999976
No 254
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.22 E-value=0.021 Score=55.37 Aligned_cols=45 Identities=13% Similarity=0.110 Sum_probs=36.3
Q ss_pred CcccccchhHHHHHHHHhcCCCCcEEEEEEcCCCCChhHHHHHHhc
Q 047336 159 RNTVGLDDRMEELLDLLIEGPTQLSVVAILDSIGLDKTAFTAEAYN 204 (290)
Q Consensus 159 ~~~vG~e~~~~~L~~~L~~~~~~~~Vi~IvGmgGiGKTTLa~~vy~ 204 (290)
.++||-+.-++.|.+++..+. -...+-++|+.|+||||+|+.+-+
T Consensus 16 ~divGq~~v~~~L~~~~~~~~-l~ha~Lf~Gp~G~GKTt~A~~lAk 60 (509)
T PRK14958 16 QEVIGQAPVVRALSNALDQQY-LHHAYLFTGTRGVGKTTISRILAK 60 (509)
T ss_pred HHhcCCHHHHHHHHHHHHhCC-CCeeEEEECCCCCCHHHHHHHHHH
Confidence 468999999999999998653 122456889999999999987765
No 255
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=95.22 E-value=0.024 Score=56.33 Aligned_cols=48 Identities=13% Similarity=0.088 Sum_probs=39.7
Q ss_pred CCcccccchhHHHHHHHHhcCC---CCcEEEEEEcCCCCChhHHHHHHhcc
Q 047336 158 NRNTVGLDDRMEELLDLLIEGP---TQLSVVAILDSIGLDKTAFTAEAYNS 205 (290)
Q Consensus 158 ~~~~vG~e~~~~~L~~~L~~~~---~~~~Vi~IvGmgGiGKTTLa~~vy~d 205 (290)
-.+++|-+...++|..||.... ..-.++.++|+.|+||||+++.+.+.
T Consensus 83 ldel~~~~~ki~~l~~~l~~~~~~~~~~~illL~GP~GsGKTTl~~~la~~ 133 (637)
T TIGR00602 83 QHELAVHKKKIEEVETWLKAQVLENAPKRILLITGPSGCGKSTTIKILSKE 133 (637)
T ss_pred HHHhcCcHHHHHHHHHHHHhcccccCCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 3569999999999999997632 23467999999999999999999873
No 256
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.22 E-value=0.016 Score=48.04 Aligned_cols=23 Identities=22% Similarity=0.213 Sum_probs=21.0
Q ss_pred cEEEEEEcCCCCChhHHHHHHhc
Q 047336 182 LSVVAILDSIGLDKTAFTAEAYN 204 (290)
Q Consensus 182 ~~Vi~IvGmgGiGKTTLa~~vy~ 204 (290)
-.+++|+|..|.|||||++.+..
T Consensus 26 G~~~~i~G~nGsGKSTLl~~l~G 48 (178)
T cd03229 26 GEIVALLGPSGSGKSTLLRCIAG 48 (178)
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 46899999999999999999975
No 257
>PLN02348 phosphoribulokinase
Probab=95.21 E-value=0.026 Score=52.62 Aligned_cols=26 Identities=15% Similarity=0.226 Sum_probs=23.5
Q ss_pred CCCcEEEEEEcCCCCChhHHHHHHhc
Q 047336 179 PTQLSVVAILDSIGLDKTAFTAEAYN 204 (290)
Q Consensus 179 ~~~~~Vi~IvGmgGiGKTTLa~~vy~ 204 (290)
.....+|+|.|..|+||||||+.+.+
T Consensus 46 ~~~p~IIGIaG~SGSGKSTfA~~L~~ 71 (395)
T PLN02348 46 DDGTVVIGLAADSGCGKSTFMRRLTS 71 (395)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHH
Confidence 35689999999999999999999887
No 258
>cd02022 DPCK Dephospho-coenzyme A kinase (DPCK, EC 2.7.1.24) catalyzes the phosphorylation of dephosphocoenzyme A (dCoA) to yield CoA, which is the final step in CoA biosynthesis.
Probab=95.21 E-value=0.013 Score=48.76 Aligned_cols=21 Identities=14% Similarity=0.283 Sum_probs=19.3
Q ss_pred EEEEEcCCCCChhHHHHHHhc
Q 047336 184 VVAILDSIGLDKTAFTAEAYN 204 (290)
Q Consensus 184 Vi~IvGmgGiGKTTLa~~vy~ 204 (290)
+|+|.|+.|+||||+++.+-+
T Consensus 1 ii~itG~~gsGKst~~~~l~~ 21 (179)
T cd02022 1 IIGLTGGIGSGKSTVAKLLKE 21 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 489999999999999999876
No 259
>PRK00698 tmk thymidylate kinase; Validated
Probab=95.21 E-value=0.041 Score=46.29 Aligned_cols=23 Identities=13% Similarity=-0.020 Sum_probs=21.0
Q ss_pred EEEEEEcCCCCChhHHHHHHhcc
Q 047336 183 SVVAILDSIGLDKTAFTAEAYNS 205 (290)
Q Consensus 183 ~Vi~IvGmgGiGKTTLa~~vy~d 205 (290)
.+|+|.|+.|+||||+++.+.+.
T Consensus 4 ~~I~ieG~~gsGKsT~~~~L~~~ 26 (205)
T PRK00698 4 MFITIEGIDGAGKSTQIELLKEL 26 (205)
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 68999999999999999999873
No 260
>COG1763 MobB Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism]
Probab=95.20 E-value=0.015 Score=47.60 Aligned_cols=23 Identities=13% Similarity=0.226 Sum_probs=20.9
Q ss_pred cEEEEEEcCCCCChhHHHHHHhc
Q 047336 182 LSVVAILDSIGLDKTAFTAEAYN 204 (290)
Q Consensus 182 ~~Vi~IvGmgGiGKTTLa~~vy~ 204 (290)
.+|++|+|+-|+|||||...+-.
T Consensus 2 ~~Il~ivG~k~SGKTTLie~lv~ 24 (161)
T COG1763 2 MKILGIVGYKNSGKTTLIEKLVR 24 (161)
T ss_pred CcEEEEEecCCCChhhHHHHHHH
Confidence 57999999999999999999865
No 261
>PRK13946 shikimate kinase; Provisional
Probab=95.20 E-value=0.014 Score=48.65 Aligned_cols=23 Identities=13% Similarity=0.190 Sum_probs=20.7
Q ss_pred cEEEEEEcCCCCChhHHHHHHhc
Q 047336 182 LSVVAILDSIGLDKTAFTAEAYN 204 (290)
Q Consensus 182 ~~Vi~IvGmgGiGKTTLa~~vy~ 204 (290)
.+.|.++||.|+||||+++.+-+
T Consensus 10 ~~~I~l~G~~GsGKsti~~~LA~ 32 (184)
T PRK13946 10 KRTVVLVGLMGAGKSTVGRRLAT 32 (184)
T ss_pred CCeEEEECCCCCCHHHHHHHHHH
Confidence 35689999999999999999987
No 262
>cd04113 Rab4 Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p
Probab=95.19 E-value=0.016 Score=46.56 Aligned_cols=21 Identities=19% Similarity=0.254 Sum_probs=18.7
Q ss_pred EEEEcCCCCChhHHHHHHhcc
Q 047336 185 VAILDSIGLDKTAFTAEAYNS 205 (290)
Q Consensus 185 i~IvGmgGiGKTTLa~~vy~d 205 (290)
|.|+|.+|+|||||++.+.+.
T Consensus 3 i~v~G~~~vGKTsli~~l~~~ 23 (161)
T cd04113 3 FIIIGSSGTGKSCLLHRFVEN 23 (161)
T ss_pred EEEECCCCCCHHHHHHHHHhC
Confidence 689999999999999988654
No 263
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=95.19 E-value=0.018 Score=46.13 Aligned_cols=53 Identities=13% Similarity=0.201 Sum_probs=33.3
Q ss_pred EEEEEEcCCCCChhHHHHHHhcccc-ccc----cCCeeEEEECCCCC-CHHHHHHHHHHH
Q 047336 183 SVVAILDSIGLDKTAFTAEAYNSSY-VKH----YFDYLAWIPAPYQY-DPDQILDTVTWL 236 (290)
Q Consensus 183 ~Vi~IvGmgGiGKTTLa~~vy~d~~-v~~----~F~~~~wV~vs~~~-~~~~ll~~Il~~ 236 (290)
+.|-++|..|+|||||++.+...+. .++ .|...+ |..+..| .-..+-+.++..
T Consensus 2 krimliG~~g~GKTTL~q~L~~~~~~~~KTq~i~~~~~~-IDTPGEyiE~~~~y~aLi~t 60 (143)
T PF10662_consen 2 KRIMLIGPSGSGKTTLAQALNGEEIRYKKTQAIEYYDNT-IDTPGEYIENPRFYHALIVT 60 (143)
T ss_pred ceEEEECCCCCCHHHHHHHHcCCCCCcCccceeEecccE-EECChhheeCHHHHHHHHHH
Confidence 3577899999999999999987542 111 133333 6666655 334555555543
No 264
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=95.18 E-value=0.017 Score=46.42 Aligned_cols=22 Identities=9% Similarity=0.330 Sum_probs=19.4
Q ss_pred EEEEcCCCCChhHHHHHHhccc
Q 047336 185 VAILDSIGLDKTAFTAEAYNSS 206 (290)
Q Consensus 185 i~IvGmgGiGKTTLa~~vy~d~ 206 (290)
|.++|.+|+|||||++.+.+..
T Consensus 3 v~v~G~~~~GKTtli~~l~~~~ 24 (164)
T smart00175 3 IILIGDSGVGKSSLLSRFTDGK 24 (164)
T ss_pred EEEECCCCCCHHHHHHHHhcCC
Confidence 6899999999999999997643
No 265
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=95.17 E-value=0.043 Score=48.59 Aligned_cols=54 Identities=15% Similarity=0.184 Sum_probs=33.2
Q ss_pred HHHHHHHHhcCCCCcEEEEEEcCCCCChhHHHHHHhccccccccCCeeEEEECCCCCCHHHHH
Q 047336 168 MEELLDLLIEGPTQLSVVAILDSIGLDKTAFTAEAYNSSYVKHYFDYLAWIPAPYQYDPDQIL 230 (290)
Q Consensus 168 ~~~L~~~L~~~~~~~~Vi~IvGmgGiGKTTLa~~vy~d~~v~~~F~~~~wV~vs~~~~~~~ll 230 (290)
.+.+..++..+ .++ -+.|.+|+|||+||+.+.+ .... ....++.+...+..+++
T Consensus 11 ~~~~l~~l~~g---~~v-LL~G~~GtGKT~lA~~la~--~lg~---~~~~i~~~~~~~~~dll 64 (262)
T TIGR02640 11 TSRALRYLKSG---YPV-HLRGPAGTGKTTLAMHVAR--KRDR---PVMLINGDAELTTSDLV 64 (262)
T ss_pred HHHHHHHHhcC---CeE-EEEcCCCCCHHHHHHHHHH--HhCC---CEEEEeCCccCCHHHHh
Confidence 34444444432 333 4899999999999999986 2221 24555666665555554
No 266
>COG0468 RecA RecA/RadA recombinase [DNA replication, recombination, and repair]
Probab=95.17 E-value=0.067 Score=47.75 Aligned_cols=55 Identities=16% Similarity=0.129 Sum_probs=43.4
Q ss_pred HhcCCCCcEEEEEEcCCCCChhHHHHHHhccccccccCCeeEEEECCCCCCHHHHHH
Q 047336 175 LIEGPTQLSVVAILDSIGLDKTAFTAEAYNSSYVKHYFDYLAWIPAPYQYDPDQILD 231 (290)
Q Consensus 175 L~~~~~~~~Vi~IvGmgGiGKTTLa~~vy~d~~v~~~F~~~~wV~vs~~~~~~~ll~ 231 (290)
|..+=+.-+++=|+|+.|.||||||-+++- .++..-..++||.--..|++..+.+
T Consensus 53 LGGGl~~g~ItEiyG~~gsGKT~lal~~~~--~aq~~g~~a~fIDtE~~l~p~r~~~ 107 (279)
T COG0468 53 LGGGLPRGRITEIYGPESSGKTTLALQLVA--NAQKPGGKAAFIDTEHALDPERAKQ 107 (279)
T ss_pred hcCCcccceEEEEecCCCcchhhHHHHHHH--HhhcCCCeEEEEeCCCCCCHHHHHH
Confidence 334446678999999999999999998877 3444455899999999999877644
No 267
>PRK13768 GTPase; Provisional
Probab=95.16 E-value=0.016 Score=50.99 Aligned_cols=23 Identities=26% Similarity=0.364 Sum_probs=19.4
Q ss_pred cEEEEEEcCCCCChhHHHHHHhc
Q 047336 182 LSVVAILDSIGLDKTAFTAEAYN 204 (290)
Q Consensus 182 ~~Vi~IvGmgGiGKTTLa~~vy~ 204 (290)
..++.|+|.||+||||++..+..
T Consensus 2 ~~~i~v~G~~G~GKTt~~~~~~~ 24 (253)
T PRK13768 2 MYIVFFLGTAGSGKTTLTKALSD 24 (253)
T ss_pred cEEEEEECCCCccHHHHHHHHHH
Confidence 35789999999999998877665
No 268
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=95.16 E-value=0.015 Score=42.09 Aligned_cols=21 Identities=24% Similarity=0.336 Sum_probs=18.4
Q ss_pred EEEEEcCCCCChhHHHHHHhc
Q 047336 184 VVAILDSIGLDKTAFTAEAYN 204 (290)
Q Consensus 184 Vi~IvGmgGiGKTTLa~~vy~ 204 (290)
++.+.|.+|+||||++..+-.
T Consensus 1 ~~~~~g~~G~Gktt~~~~l~~ 21 (99)
T cd01983 1 VIVVTGKGGVGKTTLAANLAA 21 (99)
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 477899999999999988876
No 269
>cd00154 Rab Rab family. Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di
Probab=95.15 E-value=0.017 Score=45.63 Aligned_cols=22 Identities=14% Similarity=0.336 Sum_probs=19.5
Q ss_pred EEEEcCCCCChhHHHHHHhccc
Q 047336 185 VAILDSIGLDKTAFTAEAYNSS 206 (290)
Q Consensus 185 i~IvGmgGiGKTTLa~~vy~d~ 206 (290)
|.++|.+|+|||||+..+.+..
T Consensus 3 i~~~G~~~~GKStl~~~l~~~~ 24 (159)
T cd00154 3 IVLIGDSGVGKTSLLLRFVDGK 24 (159)
T ss_pred EEEECCCCCCHHHHHHHHHhCc
Confidence 6799999999999999987754
No 270
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=95.14 E-value=0.033 Score=46.18 Aligned_cols=24 Identities=13% Similarity=0.011 Sum_probs=20.5
Q ss_pred cEEEEEEcCCCCChhHHHHHHhcc
Q 047336 182 LSVVAILDSIGLDKTAFTAEAYNS 205 (290)
Q Consensus 182 ~~Vi~IvGmgGiGKTTLa~~vy~d 205 (290)
...|.|+|.+|+|||||++.+.++
T Consensus 19 ~~ki~ilG~~~~GKStLi~~l~~~ 42 (190)
T cd00879 19 EAKILFLGLDNAGKTTLLHMLKDD 42 (190)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 445599999999999999998763
No 271
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=95.13 E-value=0.018 Score=49.23 Aligned_cols=24 Identities=21% Similarity=0.203 Sum_probs=21.7
Q ss_pred CcEEEEEEcCCCCChhHHHHHHhc
Q 047336 181 QLSVVAILDSIGLDKTAFTAEAYN 204 (290)
Q Consensus 181 ~~~Vi~IvGmgGiGKTTLa~~vy~ 204 (290)
+-.|++|+|+.|+|||||.+.+..
T Consensus 27 ~Gevv~iiGpSGSGKSTlLRclN~ 50 (240)
T COG1126 27 KGEVVVIIGPSGSGKSTLLRCLNG 50 (240)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHC
Confidence 356899999999999999999986
No 272
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=95.13 E-value=0.016 Score=45.86 Aligned_cols=21 Identities=10% Similarity=0.109 Sum_probs=19.4
Q ss_pred EEEEcCCCCChhHHHHHHhcc
Q 047336 185 VAILDSIGLDKTAFTAEAYNS 205 (290)
Q Consensus 185 i~IvGmgGiGKTTLa~~vy~d 205 (290)
|+|+|..|+|||||.+.+.+.
T Consensus 2 i~i~G~~~~GKssl~~~l~~~ 22 (159)
T cd04159 2 ITLVGLQNSGKTTLVNVIAGG 22 (159)
T ss_pred EEEEcCCCCCHHHHHHHHccC
Confidence 689999999999999999875
No 273
>PRK14490 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MobA; Provisional
Probab=95.12 E-value=0.026 Score=52.60 Aligned_cols=24 Identities=17% Similarity=0.092 Sum_probs=22.1
Q ss_pred CcEEEEEEcCCCCChhHHHHHHhc
Q 047336 181 QLSVVAILDSIGLDKTAFTAEAYN 204 (290)
Q Consensus 181 ~~~Vi~IvGmgGiGKTTLa~~vy~ 204 (290)
+.-||+|+|..|+|||||+..+..
T Consensus 4 ~~~~i~i~G~~gsGKTTl~~~l~~ 27 (369)
T PRK14490 4 HPFEIAFCGYSGSGKTTLITALVR 27 (369)
T ss_pred CCEEEEEEeCCCCCHHHHHHHHHH
Confidence 467999999999999999999987
No 274
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.12 E-value=0.017 Score=50.07 Aligned_cols=23 Identities=17% Similarity=0.209 Sum_probs=21.0
Q ss_pred cEEEEEEcCCCCChhHHHHHHhc
Q 047336 182 LSVVAILDSIGLDKTAFTAEAYN 204 (290)
Q Consensus 182 ~~Vi~IvGmgGiGKTTLa~~vy~ 204 (290)
=.+++|+|..|.|||||++.+..
T Consensus 26 Ge~~~l~G~nGsGKSTLl~~l~G 48 (235)
T cd03261 26 GEILAIIGPSGSGKSTLLRLIVG 48 (235)
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 45899999999999999999986
No 275
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.12 E-value=0.028 Score=52.14 Aligned_cols=45 Identities=16% Similarity=0.166 Sum_probs=37.3
Q ss_pred CcccccchhHHHHHHHHhcCCCCcEEEEEEcCCCCChhHHHHHHhc
Q 047336 159 RNTVGLDDRMEELLDLLIEGPTQLSVVAILDSIGLDKTAFTAEAYN 204 (290)
Q Consensus 159 ~~~vG~e~~~~~L~~~L~~~~~~~~Vi~IvGmgGiGKTTLa~~vy~ 204 (290)
.+++|.+...+.+.+++..+. -...+-++|+.|+||||+|+.+-+
T Consensus 17 ~~iig~~~~~~~l~~~i~~~~-~~~~~L~~G~~G~GKt~~a~~la~ 61 (367)
T PRK14970 17 DDVVGQSHITNTLLNAIENNH-LAQALLFCGPRGVGKTTCARILAR 61 (367)
T ss_pred HhcCCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHH
Confidence 458999999999999988653 235777899999999999998866
No 276
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=95.10 E-value=0.033 Score=46.53 Aligned_cols=35 Identities=20% Similarity=0.136 Sum_probs=25.1
Q ss_pred hHHHHHHHHhcCCCCcEEEEEEcCCCCChhHHHHHHhc
Q 047336 167 RMEELLDLLIEGPTQLSVVAILDSIGLDKTAFTAEAYN 204 (290)
Q Consensus 167 ~~~~L~~~L~~~~~~~~Vi~IvGmgGiGKTTLa~~vy~ 204 (290)
+..++...... .-..+.|+|..|.|||||++.+..
T Consensus 13 ~~~~~l~~~v~---~g~~i~I~G~tGSGKTTll~aL~~ 47 (186)
T cd01130 13 LQAAYLWLAVE---ARKNILISGGTGSGKTTLLNALLA 47 (186)
T ss_pred HHHHHHHHHHh---CCCEEEEECCCCCCHHHHHHHHHh
Confidence 33444444442 245789999999999999998875
No 277
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=95.10 E-value=0.017 Score=49.36 Aligned_cols=23 Identities=17% Similarity=0.098 Sum_probs=21.2
Q ss_pred cEEEEEEcCCCCChhHHHHHHhc
Q 047336 182 LSVVAILDSIGLDKTAFTAEAYN 204 (290)
Q Consensus 182 ~~Vi~IvGmgGiGKTTLa~~vy~ 204 (290)
-.+++|+|..|.|||||++.+..
T Consensus 28 Ge~~~i~G~nGsGKSTLl~~l~G 50 (220)
T cd03263 28 GEIFGLLGHNGAGKTTTLKMLTG 50 (220)
T ss_pred CcEEEEECCCCCCHHHHHHHHhC
Confidence 45899999999999999999986
No 278
>PRK05642 DNA replication initiation factor; Validated
Probab=95.10 E-value=0.071 Score=46.37 Aligned_cols=37 Identities=11% Similarity=0.173 Sum_probs=26.3
Q ss_pred cEEEEEEcCCCCChhHHHHHHhccccccccCCeeEEEEC
Q 047336 182 LSVVAILDSIGLDKTAFTAEAYNSSYVKHYFDYLAWIPA 220 (290)
Q Consensus 182 ~~Vi~IvGmgGiGKTTLa~~vy~d~~v~~~F~~~~wV~v 220 (290)
...+-|+|..|+|||.|++.+.+. ....-..+++++.
T Consensus 45 ~~~l~l~G~~G~GKTHLl~a~~~~--~~~~~~~v~y~~~ 81 (234)
T PRK05642 45 ESLIYLWGKDGVGRSHLLQAACLR--FEQRGEPAVYLPL 81 (234)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH--HHhCCCcEEEeeH
Confidence 467889999999999999999873 2222233556654
No 279
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.10 E-value=0.017 Score=49.42 Aligned_cols=24 Identities=17% Similarity=0.116 Sum_probs=21.5
Q ss_pred cEEEEEEcCCCCChhHHHHHHhcc
Q 047336 182 LSVVAILDSIGLDKTAFTAEAYNS 205 (290)
Q Consensus 182 ~~Vi~IvGmgGiGKTTLa~~vy~d 205 (290)
-.+++|+|..|.|||||++.+..-
T Consensus 30 G~~~~i~G~nGsGKSTLl~~l~Gl 53 (220)
T cd03293 30 GEFVALVGPSGCGKSTLLRIIAGL 53 (220)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCC
Confidence 458999999999999999999873
No 280
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=95.09 E-value=0.019 Score=52.30 Aligned_cols=24 Identities=17% Similarity=0.202 Sum_probs=21.4
Q ss_pred CcEEEEEEcCCCCChhHHHHHHhc
Q 047336 181 QLSVVAILDSIGLDKTAFTAEAYN 204 (290)
Q Consensus 181 ~~~Vi~IvGmgGiGKTTLa~~vy~ 204 (290)
...+|+++|++|+||||++..+..
T Consensus 113 ~~~vi~lvGpnGsGKTTt~~kLA~ 136 (318)
T PRK10416 113 KPFVILVVGVNGVGKTTTIGKLAH 136 (318)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHH
Confidence 478999999999999999888765
No 281
>cd00876 Ras Ras family. The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m
Probab=95.09 E-value=0.018 Score=45.88 Aligned_cols=21 Identities=29% Similarity=0.400 Sum_probs=18.6
Q ss_pred EEEEcCCCCChhHHHHHHhcc
Q 047336 185 VAILDSIGLDKTAFTAEAYNS 205 (290)
Q Consensus 185 i~IvGmgGiGKTTLa~~vy~d 205 (290)
|.|+|+.|+|||||...+.+.
T Consensus 2 i~i~G~~~~GKTsli~~l~~~ 22 (160)
T cd00876 2 VVVLGAGGVGKSAITIQFVKG 22 (160)
T ss_pred EEEECCCCCCHHHHHHHHHhC
Confidence 689999999999999988653
No 282
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=95.09 E-value=0.029 Score=48.88 Aligned_cols=49 Identities=16% Similarity=0.285 Sum_probs=37.8
Q ss_pred CCCCcccccchhHHHHHHHHh---cCCCCcEEEEEEcCCCCChhHHHHHHhcc
Q 047336 156 SKNRNTVGLDDRMEELLDLLI---EGPTQLSVVAILDSIGLDKTAFTAEAYNS 205 (290)
Q Consensus 156 ~~~~~~vG~e~~~~~L~~~L~---~~~~~~~Vi~IvGmgGiGKTTLa~~vy~d 205 (290)
..-++++|.+..++.|++=.. .+. ...-+-+||..|.|||+|++.+.+.
T Consensus 24 ~~l~~L~Gie~Qk~~l~~Nt~~Fl~G~-pannvLL~G~rGtGKSSlVkall~~ 75 (249)
T PF05673_consen 24 IRLDDLIGIERQKEALIENTEQFLQGL-PANNVLLWGARGTGKSSLVKALLNE 75 (249)
T ss_pred CCHHHhcCHHHHHHHHHHHHHHHHcCC-CCcceEEecCCCCCHHHHHHHHHHH
Confidence 455679999999999887433 232 3445567999999999999999873
No 283
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=95.08 E-value=0.018 Score=47.88 Aligned_cols=23 Identities=17% Similarity=0.215 Sum_probs=20.5
Q ss_pred cEEEEEEcCCCCChhHHHHHHhc
Q 047336 182 LSVVAILDSIGLDKTAFTAEAYN 204 (290)
Q Consensus 182 ~~Vi~IvGmgGiGKTTLa~~vy~ 204 (290)
-.+++|+|+.|+|||||.+.+..
T Consensus 21 G~~~~l~G~nG~GKSTLl~~il~ 43 (176)
T cd03238 21 NVLVVVTGVSGSGKSTLVNEGLY 43 (176)
T ss_pred CCEEEEECCCCCCHHHHHHHHhh
Confidence 46899999999999999999863
No 284
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.08 E-value=0.018 Score=49.01 Aligned_cols=24 Identities=17% Similarity=0.116 Sum_probs=21.5
Q ss_pred cEEEEEEcCCCCChhHHHHHHhcc
Q 047336 182 LSVVAILDSIGLDKTAFTAEAYNS 205 (290)
Q Consensus 182 ~~Vi~IvGmgGiGKTTLa~~vy~d 205 (290)
-.+++|+|..|.|||||++.+...
T Consensus 26 G~~~~i~G~nGsGKSTLl~~l~G~ 49 (210)
T cd03269 26 GEIFGLLGPNGAGKTTTIRMILGI 49 (210)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCC
Confidence 468999999999999999999863
No 285
>PRK03731 aroL shikimate kinase II; Reviewed
Probab=95.07 E-value=0.017 Score=47.37 Aligned_cols=21 Identities=14% Similarity=0.132 Sum_probs=19.1
Q ss_pred EEEEEcCCCCChhHHHHHHhc
Q 047336 184 VVAILDSIGLDKTAFTAEAYN 204 (290)
Q Consensus 184 Vi~IvGmgGiGKTTLa~~vy~ 204 (290)
.|.|+|+.|+||||+++.+-+
T Consensus 4 ~i~~~G~~GsGKst~~~~la~ 24 (171)
T PRK03731 4 PLFLVGARGCGKTTVGMALAQ 24 (171)
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 578899999999999999976
No 286
>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.
Probab=95.07 E-value=0.018 Score=45.98 Aligned_cols=22 Identities=18% Similarity=0.342 Sum_probs=18.8
Q ss_pred EEEEEcCCCCChhHHHHHHhcc
Q 047336 184 VVAILDSIGLDKTAFTAEAYNS 205 (290)
Q Consensus 184 Vi~IvGmgGiGKTTLa~~vy~d 205 (290)
-|.|+|.+|+|||||++.+.++
T Consensus 3 ki~iiG~~~vGKTsl~~~~~~~ 24 (162)
T cd04138 3 KLVVVGAGGVGKSALTIQLIQN 24 (162)
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 3689999999999999887653
No 287
>PRK13236 nitrogenase reductase; Reviewed
Probab=95.07 E-value=0.02 Score=51.64 Aligned_cols=23 Identities=13% Similarity=0.281 Sum_probs=19.6
Q ss_pred CCcEEEEEEcCCCCChhHHHHHH
Q 047336 180 TQLSVVAILDSIGLDKTAFTAEA 202 (290)
Q Consensus 180 ~~~~Vi~IvGmgGiGKTTLa~~v 202 (290)
.+.+||++.|-||+||||.|-.+
T Consensus 4 ~~~~~~~~~GKGGVGKTt~a~NL 26 (296)
T PRK13236 4 ENIRQIAFYGKGGIGKSTTSQNT 26 (296)
T ss_pred cCceEEEEECCCcCCHHHHHHHH
Confidence 45899999999999999976554
No 288
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=95.06 E-value=0.018 Score=50.12 Aligned_cols=23 Identities=22% Similarity=0.193 Sum_probs=20.9
Q ss_pred cEEEEEEcCCCCChhHHHHHHhc
Q 047336 182 LSVVAILDSIGLDKTAFTAEAYN 204 (290)
Q Consensus 182 ~~Vi~IvGmgGiGKTTLa~~vy~ 204 (290)
=.+++|+|..|.|||||++.+..
T Consensus 28 Ge~~~l~G~nGsGKSTLl~~l~G 50 (243)
T TIGR02315 28 GEFVAIIGPSGAGKSTLLRCINR 50 (243)
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 45899999999999999999976
No 289
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=95.05 E-value=0.018 Score=49.04 Aligned_cols=23 Identities=17% Similarity=0.174 Sum_probs=20.9
Q ss_pred cEEEEEEcCCCCChhHHHHHHhc
Q 047336 182 LSVVAILDSIGLDKTAFTAEAYN 204 (290)
Q Consensus 182 ~~Vi~IvGmgGiGKTTLa~~vy~ 204 (290)
=.+++|+|..|.|||||++.+..
T Consensus 28 G~~~~l~G~nGsGKSTLl~~i~G 50 (214)
T TIGR02673 28 GEFLFLTGPSGAGKTTLLKLLYG 50 (214)
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 45899999999999999999976
No 290
>PRK13233 nifH nitrogenase reductase; Reviewed
Probab=95.05 E-value=0.017 Score=51.26 Aligned_cols=20 Identities=25% Similarity=0.330 Sum_probs=17.5
Q ss_pred EEEEEEcCCCCChhHHHHHH
Q 047336 183 SVVAILDSIGLDKTAFTAEA 202 (290)
Q Consensus 183 ~Vi~IvGmgGiGKTTLa~~v 202 (290)
++|+|.|-||+||||+|-.+
T Consensus 3 ~vIav~~KGGVGKTT~a~nL 22 (275)
T PRK13233 3 RKIAIYGKGGIGKSTTTQNT 22 (275)
T ss_pred eEEEEEcCCCCcHHHHHHHH
Confidence 68999999999999988754
No 291
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=95.04 E-value=0.049 Score=49.63 Aligned_cols=44 Identities=18% Similarity=0.134 Sum_probs=29.7
Q ss_pred cCCCCcEEEEEEcCCCCChhHHHHHHhccccccccCCeeEEEECCC
Q 047336 177 EGPTQLSVVAILDSIGLDKTAFTAEAYNSSYVKHYFDYLAWIPAPY 222 (290)
Q Consensus 177 ~~~~~~~Vi~IvGmgGiGKTTLa~~vy~d~~v~~~F~~~~wV~vs~ 222 (290)
.+=+.-+++-|.|++|+||||||.++... ....=..++||....
T Consensus 50 GGlp~G~iteI~G~~GsGKTtLaL~~~~~--~~~~g~~v~yId~E~ 93 (321)
T TIGR02012 50 GGLPRGRIIEIYGPESSGKTTLALHAIAE--AQKAGGTAAFIDAEH 93 (321)
T ss_pred CCCcCCeEEEEECCCCCCHHHHHHHHHHH--HHHcCCcEEEEcccc
Confidence 34456789999999999999999876652 222233455665433
No 292
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.04 E-value=0.018 Score=49.93 Aligned_cols=23 Identities=17% Similarity=0.172 Sum_probs=20.9
Q ss_pred cEEEEEEcCCCCChhHHHHHHhc
Q 047336 182 LSVVAILDSIGLDKTAFTAEAYN 204 (290)
Q Consensus 182 ~~Vi~IvGmgGiGKTTLa~~vy~ 204 (290)
-.+++|+|..|.|||||++.+..
T Consensus 27 Ge~~~i~G~nGsGKSTLl~~l~G 49 (241)
T cd03256 27 GEFVALIGPSGAGKSTLLRCLNG 49 (241)
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 45899999999999999999975
No 293
>cd03114 ArgK-like The function of this protein family is unkown. The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.
Probab=95.03 E-value=0.015 Score=46.83 Aligned_cols=21 Identities=19% Similarity=0.267 Sum_probs=18.8
Q ss_pred EEEEEcCCCCChhHHHHHHhc
Q 047336 184 VVAILDSIGLDKTAFTAEAYN 204 (290)
Q Consensus 184 Vi~IvGmgGiGKTTLa~~vy~ 204 (290)
+|++.|.+|+||||++..+..
T Consensus 1 ~i~~~G~~GsGKTt~~~~l~~ 21 (148)
T cd03114 1 VIGITGVPGAGKSTLIDALIT 21 (148)
T ss_pred CEEEECCCCCcHHHHHHHHHH
Confidence 478999999999999988876
No 294
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=95.03 E-value=0.028 Score=48.61 Aligned_cols=44 Identities=27% Similarity=0.373 Sum_probs=34.5
Q ss_pred CcccccchhHHHHHHHHhcCCCCcEEEEEEcCCCCChhH----HHHHHhc
Q 047336 159 RNTVGLDDRMEELLDLLIEGPTQLSVVAILDSIGLDKTA----FTAEAYN 204 (290)
Q Consensus 159 ~~~vG~e~~~~~L~~~L~~~~~~~~Vi~IvGmgGiGKTT----La~~vy~ 204 (290)
.++||-++..+.|.-...+++ .+-+-|.||+|+|||| ||+.+.-
T Consensus 27 ~dIVGNe~tv~rl~via~~gn--mP~liisGpPG~GKTTsi~~LAr~LLG 74 (333)
T KOG0991|consen 27 QDIVGNEDTVERLSVIAKEGN--MPNLIISGPPGTGKTTSILCLARELLG 74 (333)
T ss_pred HHhhCCHHHHHHHHHHHHcCC--CCceEeeCCCCCchhhHHHHHHHHHhC
Confidence 568999999888877666655 7778899999999999 4555443
No 295
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=95.02 E-value=0.018 Score=49.00 Aligned_cols=24 Identities=17% Similarity=0.171 Sum_probs=21.5
Q ss_pred cEEEEEEcCCCCChhHHHHHHhcc
Q 047336 182 LSVVAILDSIGLDKTAFTAEAYNS 205 (290)
Q Consensus 182 ~~Vi~IvGmgGiGKTTLa~~vy~d 205 (290)
-.+++|+|..|.|||||++.+..-
T Consensus 25 Ge~~~l~G~nGsGKSTLl~~l~G~ 48 (213)
T cd03235 25 GEFLAIVGPNGAGKSTLLKAILGL 48 (213)
T ss_pred CCEEEEECCCCCCHHHHHHHHcCC
Confidence 458999999999999999999763
No 296
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=95.02 E-value=0.17 Score=48.00 Aligned_cols=24 Identities=17% Similarity=0.138 Sum_probs=20.1
Q ss_pred CcEEEEEEcCCCCChhHHHHHHhc
Q 047336 181 QLSVVAILDSIGLDKTAFTAEAYN 204 (290)
Q Consensus 181 ~~~Vi~IvGmgGiGKTTLa~~vy~ 204 (290)
...++.++|.+|+||||.|.++-.
T Consensus 98 ~p~vi~~vG~~GsGKTTtaakLA~ 121 (428)
T TIGR00959 98 PPTVILMVGLQGSGKTTTCGKLAY 121 (428)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHH
Confidence 468999999999999998766654
No 297
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.02 E-value=0.019 Score=48.90 Aligned_cols=23 Identities=22% Similarity=0.173 Sum_probs=21.0
Q ss_pred cEEEEEEcCCCCChhHHHHHHhc
Q 047336 182 LSVVAILDSIGLDKTAFTAEAYN 204 (290)
Q Consensus 182 ~~Vi~IvGmgGiGKTTLa~~vy~ 204 (290)
-.+++|+|..|.|||||++.+..
T Consensus 26 Ge~~~i~G~nGsGKSTLl~~l~G 48 (213)
T cd03259 26 GEFLALLGPSGCGKTTLLRLIAG 48 (213)
T ss_pred CcEEEEECCCCCCHHHHHHHHhC
Confidence 45899999999999999999976
No 298
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=95.02 E-value=0.047 Score=49.79 Aligned_cols=46 Identities=20% Similarity=0.198 Sum_probs=31.7
Q ss_pred CCCCcEEEEEEcCCCCChhHHHHHHhccccccccCCeeEEEECCCCCC
Q 047336 178 GPTQLSVVAILDSIGLDKTAFTAEAYNSSYVKHYFDYLAWIPAPYQYD 225 (290)
Q Consensus 178 ~~~~~~Vi~IvGmgGiGKTTLa~~vy~d~~v~~~F~~~~wV~vs~~~~ 225 (290)
+=+.-+++-|.|++|+||||||-++.-. ....-..++||.....++
T Consensus 51 Glp~G~iteI~Gp~GsGKTtLal~~~~~--~~~~g~~~vyId~E~~~~ 96 (325)
T cd00983 51 GYPKGRIIEIYGPESSGKTTLALHAIAE--AQKLGGTVAFIDAEHALD 96 (325)
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHH--HHHcCCCEEEECccccHH
Confidence 4355678889999999999999887652 223334567776644443
No 299
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=95.01 E-value=0.037 Score=50.85 Aligned_cols=45 Identities=13% Similarity=0.173 Sum_probs=36.4
Q ss_pred CcccccchhHHHHHHHHhcCCCCcEEEEEEcCCCCChhHHHHHHhc
Q 047336 159 RNTVGLDDRMEELLDLLIEGPTQLSVVAILDSIGLDKTAFTAEAYN 204 (290)
Q Consensus 159 ~~~vG~e~~~~~L~~~L~~~~~~~~Vi~IvGmgGiGKTTLa~~vy~ 204 (290)
.+++|.+..++.|.+++..+. -...+-++|+.|+||||+|+.+..
T Consensus 14 ~~iig~~~~~~~l~~~~~~~~-~~~~~Ll~G~~G~GKt~~a~~la~ 58 (355)
T TIGR02397 14 EDVIGQEHIVQTLKNAIKNGR-IAHAYLFSGPRGTGKTSIARIFAK 58 (355)
T ss_pred hhccCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHH
Confidence 468999999999999887653 234567899999999999977754
No 300
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=95.01 E-value=0.034 Score=47.30 Aligned_cols=52 Identities=17% Similarity=0.091 Sum_probs=31.1
Q ss_pred EEEEEcCCCCChhHHHHHHhcccc-----ccccCCeeEEEECCCCCCHHHHHHHHHH
Q 047336 184 VVAILDSIGLDKTAFTAEAYNSSY-----VKHYFDYLAWIPAPYQYDPDQILDTVTW 235 (290)
Q Consensus 184 Vi~IvGmgGiGKTTLa~~vy~d~~-----v~~~F~~~~wV~vs~~~~~~~ll~~Il~ 235 (290)
+..|+|++|.||||++..+-..-. ....-+..+-++.+.+-.+..++..+.+
T Consensus 19 ~~~i~GpPGTGKT~~l~~~i~~~~~~~~~~~~~~~~~il~~~~sN~avd~~~~~l~~ 75 (236)
T PF13086_consen 19 ITLIQGPPGTGKTTTLASIIAQLLQRFKSRSADRGKKILVVSPSNAAVDNILERLKK 75 (236)
T ss_dssp -EEEE-STTSSHHHHHHHHHHHH-------HCCCSS-EEEEESSHHHHHHHHHHHHC
T ss_pred CEEEECCCCCChHHHHHHHHHHhccchhhhhhhccccceeecCCchhHHHHHHHHHh
Confidence 788999999999976655544210 1133445555555666667777777766
No 301
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=95.01 E-value=0.028 Score=53.05 Aligned_cols=46 Identities=17% Similarity=0.209 Sum_probs=34.6
Q ss_pred CcccccchhHHHHHHHHhc-------C-----C--CCcEEEEEEcCCCCChhHHHHHHhc
Q 047336 159 RNTVGLDDRMEELLDLLIE-------G-----P--TQLSVVAILDSIGLDKTAFTAEAYN 204 (290)
Q Consensus 159 ~~~vG~e~~~~~L~~~L~~-------~-----~--~~~~Vi~IvGmgGiGKTTLa~~vy~ 204 (290)
..++|.+..++.|...+.. . + ...+-+-++|+.|+||||||+.+.+
T Consensus 71 ~~ViGq~~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~lAr~lA~ 130 (412)
T PRK05342 71 QYVIGQERAKKVLSVAVYNHYKRLRHGDKKDDDVELQKSNILLIGPTGSGKTLLAQTLAR 130 (412)
T ss_pred hHeeChHHHHHHHHHHHHHHHHhhhcccccccccccCCceEEEEcCCCCCHHHHHHHHHH
Confidence 3589999999988655421 1 0 1235678999999999999999976
No 302
>PRK08099 bifunctional DNA-binding transcriptional repressor/ NMN adenylyltransferase; Provisional
Probab=95.00 E-value=0.017 Score=54.33 Aligned_cols=26 Identities=23% Similarity=0.176 Sum_probs=22.9
Q ss_pred CCcEEEEEEcCCCCChhHHHHHHhcc
Q 047336 180 TQLSVVAILDSIGLDKTAFTAEAYNS 205 (290)
Q Consensus 180 ~~~~Vi~IvGmgGiGKTTLa~~vy~d 205 (290)
.-.+.|+|+|..|.|||||++.+.+.
T Consensus 217 ~~~~~IvI~G~~gsGKTTL~~~La~~ 242 (399)
T PRK08099 217 FFVRTVAILGGESSGKSTLVNKLANI 242 (399)
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHH
Confidence 44789999999999999999998863
No 303
>PRK13948 shikimate kinase; Provisional
Probab=95.00 E-value=0.02 Score=47.87 Aligned_cols=24 Identities=21% Similarity=0.201 Sum_probs=21.3
Q ss_pred CcEEEEEEcCCCCChhHHHHHHhc
Q 047336 181 QLSVVAILDSIGLDKTAFTAEAYN 204 (290)
Q Consensus 181 ~~~Vi~IvGmgGiGKTTLa~~vy~ 204 (290)
....|.++||.|+||||+++.+-+
T Consensus 9 ~~~~I~LiG~~GsGKSTvg~~La~ 32 (182)
T PRK13948 9 PVTWVALAGFMGTGKSRIGWELSR 32 (182)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHH
Confidence 457788999999999999999976
No 304
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=95.00 E-value=0.018 Score=48.09 Aligned_cols=21 Identities=14% Similarity=0.158 Sum_probs=18.9
Q ss_pred EEEEcCCCCChhHHHHHHhcc
Q 047336 185 VAILDSIGLDKTAFTAEAYNS 205 (290)
Q Consensus 185 i~IvGmgGiGKTTLa~~vy~d 205 (290)
|.|.|++|+||||+|+.+...
T Consensus 2 I~i~G~pGsGKst~a~~La~~ 22 (194)
T cd01428 2 ILLLGPPGSGKGTQAERLAKK 22 (194)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 679999999999999999773
No 305
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=94.99 E-value=0.019 Score=49.38 Aligned_cols=23 Identities=17% Similarity=0.186 Sum_probs=21.3
Q ss_pred cEEEEEEcCCCCChhHHHHHHhc
Q 047336 182 LSVVAILDSIGLDKTAFTAEAYN 204 (290)
Q Consensus 182 ~~Vi~IvGmgGiGKTTLa~~vy~ 204 (290)
-.+++|+|..|.|||||++.+..
T Consensus 36 Ge~~~i~G~nGsGKSTLl~~i~G 58 (228)
T PRK10584 36 GETIALIGESGSGKSTLLAILAG 58 (228)
T ss_pred CCEEEEECCCCCCHHHHHHHHHc
Confidence 46999999999999999999986
No 306
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=94.99 E-value=0.018 Score=47.88 Aligned_cols=23 Identities=22% Similarity=0.141 Sum_probs=21.0
Q ss_pred cEEEEEEcCCCCChhHHHHHHhc
Q 047336 182 LSVVAILDSIGLDKTAFTAEAYN 204 (290)
Q Consensus 182 ~~Vi~IvGmgGiGKTTLa~~vy~ 204 (290)
-.+++|+|..|.|||||++.+..
T Consensus 25 Ge~~~l~G~nGsGKSTLl~~l~G 47 (177)
T cd03222 25 GEVIGIVGPNGTGKTTAVKILAG 47 (177)
T ss_pred CCEEEEECCCCChHHHHHHHHHc
Confidence 45899999999999999999976
No 307
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=94.98 E-value=0.029 Score=50.14 Aligned_cols=67 Identities=15% Similarity=0.081 Sum_probs=44.7
Q ss_pred HHHHHHHHhcCCCCcEEEEEEcCCCCChhHHHHHHhccccccccCCeeEEEECCCCCCHHHHHHHHH
Q 047336 168 MEELLDLLIEGPTQLSVVAILDSIGLDKTAFTAEAYNSSYVKHYFDYLAWIPAPYQYDPDQILDTVT 234 (290)
Q Consensus 168 ~~~L~~~L~~~~~~~~Vi~IvGmgGiGKTTLa~~vy~d~~v~~~F~~~~wV~vs~~~~~~~ll~~Il 234 (290)
..+|+..+.....+..||+|.|.||+||+||.-.+-....-..|=--++=|.-|.+|+--.||-+=+
T Consensus 37 a~~ll~~l~p~tG~a~viGITG~PGaGKSTli~~L~~~l~~~G~rVaVlAVDPSSp~TGGsiLGDRi 103 (323)
T COG1703 37 ARELLRALYPRTGNAHVIGITGVPGAGKSTLIEALGRELRERGHRVAVLAVDPSSPFTGGSILGDRI 103 (323)
T ss_pred HHHHHHHHhhcCCCCcEEEecCCCCCchHHHHHHHHHHHHHCCcEEEEEEECCCCCCCCccccccHh
Confidence 4567777776656788999999999999999987766332222222234444577777666665433
No 308
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=94.98 E-value=0.058 Score=51.52 Aligned_cols=24 Identities=17% Similarity=0.264 Sum_probs=21.2
Q ss_pred cEEEEEEcCCCCChhHHHHHHhcc
Q 047336 182 LSVVAILDSIGLDKTAFTAEAYNS 205 (290)
Q Consensus 182 ~~Vi~IvGmgGiGKTTLa~~vy~d 205 (290)
..-+-|+|+.|+|||+|++.+.+.
T Consensus 141 ~npl~L~G~~G~GKTHLl~Ai~~~ 164 (445)
T PRK12422 141 FNPIYLFGPEGSGKTHLMQAAVHA 164 (445)
T ss_pred CceEEEEcCCCCCHHHHHHHHHHH
Confidence 456789999999999999999983
No 309
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=94.97 E-value=0.02 Score=48.18 Aligned_cols=24 Identities=13% Similarity=0.070 Sum_probs=21.5
Q ss_pred cEEEEEEcCCCCChhHHHHHHhcc
Q 047336 182 LSVVAILDSIGLDKTAFTAEAYNS 205 (290)
Q Consensus 182 ~~Vi~IvGmgGiGKTTLa~~vy~d 205 (290)
-.+++|+|..|.|||||++.+..-
T Consensus 26 Ge~~~l~G~nGsGKSTLl~~l~G~ 49 (195)
T PRK13541 26 SAITYIKGANGCGKSSLLRMIAGI 49 (195)
T ss_pred CcEEEEECCCCCCHHHHHHHHhcC
Confidence 458999999999999999999874
No 310
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=94.97 E-value=0.02 Score=48.70 Aligned_cols=24 Identities=17% Similarity=0.232 Sum_probs=21.4
Q ss_pred cEEEEEEcCCCCChhHHHHHHhcc
Q 047336 182 LSVVAILDSIGLDKTAFTAEAYNS 205 (290)
Q Consensus 182 ~~Vi~IvGmgGiGKTTLa~~vy~d 205 (290)
-.+++|+|..|.|||||++.+..-
T Consensus 27 G~~~~i~G~nGsGKSTLl~~l~G~ 50 (214)
T cd03292 27 GEFVFLVGPSGAGKSTLLKLIYKE 50 (214)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 458999999999999999999773
No 311
>PRK14532 adenylate kinase; Provisional
Probab=94.96 E-value=0.018 Score=47.98 Aligned_cols=20 Identities=5% Similarity=0.042 Sum_probs=18.2
Q ss_pred EEEEcCCCCChhHHHHHHhc
Q 047336 185 VAILDSIGLDKTAFTAEAYN 204 (290)
Q Consensus 185 i~IvGmgGiGKTTLa~~vy~ 204 (290)
|-|+|++|+||||+|+.+-.
T Consensus 3 i~~~G~pGsGKsT~a~~la~ 22 (188)
T PRK14532 3 LILFGPPAAGKGTQAKRLVE 22 (188)
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 67899999999999999975
No 312
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=94.96 E-value=0.13 Score=48.61 Aligned_cols=24 Identities=33% Similarity=0.333 Sum_probs=20.3
Q ss_pred CcEEEEEEcCCCCChhHHHHHHhc
Q 047336 181 QLSVVAILDSIGLDKTAFTAEAYN 204 (290)
Q Consensus 181 ~~~Vi~IvGmgGiGKTTLa~~vy~ 204 (290)
.-.+|+++|..|+||||++..+-.
T Consensus 190 ~g~vi~lvGpnG~GKTTtlakLA~ 213 (420)
T PRK14721 190 QGGVYALIGPTGVGKTTTTAKLAA 213 (420)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 357999999999999999886654
No 313
>CHL00081 chlI Mg-protoporyphyrin IX chelatase
Probab=94.95 E-value=0.023 Score=52.35 Aligned_cols=45 Identities=18% Similarity=0.200 Sum_probs=36.4
Q ss_pred CCcccccchhHHHHHHHHhcCCCCcEEEEEEcCCCCChhHHHHHHhc
Q 047336 158 NRNTVGLDDRMEELLDLLIEGPTQLSVVAILDSIGLDKTAFTAEAYN 204 (290)
Q Consensus 158 ~~~~vG~e~~~~~L~~~L~~~~~~~~Vi~IvGmgGiGKTTLa~~vy~ 204 (290)
=+.+||.++.+..|...+.+. ++.-+-|.|..|+||||+|+.+|+
T Consensus 16 f~~ivGq~~~k~al~~~~~~p--~~~~vli~G~~GtGKs~~ar~~~~ 60 (350)
T CHL00081 16 FTAIVGQEEMKLALILNVIDP--KIGGVMIMGDRGTGKSTTIRALVD 60 (350)
T ss_pred HHHHhChHHHHHHHHHhccCC--CCCeEEEEcCCCCCHHHHHHHHHH
Confidence 356999999888888766653 455566999999999999999966
No 314
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=94.95 E-value=0.02 Score=49.24 Aligned_cols=23 Identities=13% Similarity=0.163 Sum_probs=20.9
Q ss_pred cEEEEEEcCCCCChhHHHHHHhc
Q 047336 182 LSVVAILDSIGLDKTAFTAEAYN 204 (290)
Q Consensus 182 ~~Vi~IvGmgGiGKTTLa~~vy~ 204 (290)
-.+++|+|..|.|||||++.+..
T Consensus 26 Ge~~~i~G~nGsGKSTLl~~i~G 48 (227)
T cd03260 26 GEITALIGPSGCGKSTLLRLLNR 48 (227)
T ss_pred CCEEEEECCCCCCHHHHHHHHHh
Confidence 46899999999999999999875
No 315
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=94.95 E-value=0.02 Score=48.44 Aligned_cols=23 Identities=17% Similarity=0.170 Sum_probs=21.2
Q ss_pred cEEEEEEcCCCCChhHHHHHHhc
Q 047336 182 LSVVAILDSIGLDKTAFTAEAYN 204 (290)
Q Consensus 182 ~~Vi~IvGmgGiGKTTLa~~vy~ 204 (290)
-.+++|+|..|.|||||.+.+..
T Consensus 26 Ge~~~i~G~nGsGKSTLl~~l~G 48 (205)
T cd03226 26 GEIIALTGKNGAGKTTLAKILAG 48 (205)
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 45899999999999999999987
No 316
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=94.95 E-value=0.02 Score=49.62 Aligned_cols=23 Identities=22% Similarity=0.180 Sum_probs=21.1
Q ss_pred cEEEEEEcCCCCChhHHHHHHhc
Q 047336 182 LSVVAILDSIGLDKTAFTAEAYN 204 (290)
Q Consensus 182 ~~Vi~IvGmgGiGKTTLa~~vy~ 204 (290)
-.+++|+|..|.|||||++.+..
T Consensus 27 Ge~~~i~G~nGsGKSTLl~~l~G 49 (236)
T TIGR03864 27 GEFVALLGPNGAGKSTLFSLLTR 49 (236)
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 46899999999999999999976
No 317
>cd04123 Rab21 Rab21 subfamily. The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site
Probab=94.94 E-value=0.021 Score=45.57 Aligned_cols=22 Identities=18% Similarity=0.181 Sum_probs=19.2
Q ss_pred EEEEEcCCCCChhHHHHHHhcc
Q 047336 184 VVAILDSIGLDKTAFTAEAYNS 205 (290)
Q Consensus 184 Vi~IvGmgGiGKTTLa~~vy~d 205 (290)
-|+|+|.+|+|||||...+.+.
T Consensus 2 ki~i~G~~~~GKStli~~l~~~ 23 (162)
T cd04123 2 KVVLLGEGRVGKTSLVLRYVEN 23 (162)
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 3789999999999999887764
No 318
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=94.94 E-value=0.021 Score=46.96 Aligned_cols=21 Identities=24% Similarity=0.262 Sum_probs=18.8
Q ss_pred EEEEEcCCCCChhHHHHHHhc
Q 047336 184 VVAILDSIGLDKTAFTAEAYN 204 (290)
Q Consensus 184 Vi~IvGmgGiGKTTLa~~vy~ 204 (290)
++.++|++|+||||++..+..
T Consensus 2 ~~~~~G~~G~GKTt~~~~la~ 22 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLAL 22 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 688999999999999888765
No 319
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.94 E-value=0.02 Score=49.73 Aligned_cols=24 Identities=25% Similarity=0.174 Sum_probs=21.5
Q ss_pred cEEEEEEcCCCCChhHHHHHHhcc
Q 047336 182 LSVVAILDSIGLDKTAFTAEAYNS 205 (290)
Q Consensus 182 ~~Vi~IvGmgGiGKTTLa~~vy~d 205 (290)
-.+++|+|..|.|||||++.+..-
T Consensus 28 Ge~~~i~G~nGsGKSTLl~~l~Gl 51 (239)
T cd03296 28 GELVALLGPSGSGKTTLLRLIAGL 51 (239)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 468999999999999999999773
No 320
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=94.94 E-value=0.038 Score=47.05 Aligned_cols=53 Identities=17% Similarity=0.125 Sum_probs=33.2
Q ss_pred ccchhHHHHHHHHhcCCCCcEEEEEEcCCCCChhHHHHHHhccccccccCCeeEEEE
Q 047336 163 GLDDRMEELLDLLIEGPTQLSVVAILDSIGLDKTAFTAEAYNSSYVKHYFDYLAWIP 219 (290)
Q Consensus 163 G~e~~~~~L~~~L~~~~~~~~Vi~IvGmgGiGKTTLa~~vy~d~~v~~~F~~~~wV~ 219 (290)
++.......++.|. +..++.+.|++|.|||.||-..--+.-..++|+..+++.
T Consensus 4 p~~~~Q~~~~~al~----~~~~v~~~G~AGTGKT~LA~a~Al~~v~~g~~~kiii~R 56 (205)
T PF02562_consen 4 PKNEEQKFALDALL----NNDLVIVNGPAGTGKTFLALAAALELVKEGEYDKIIITR 56 (205)
T ss_dssp --SHHHHHHHHHHH----H-SEEEEE--TTSSTTHHHHHHHHHHHHTTS-SEEEEEE
T ss_pred CCCHHHHHHHHHHH----hCCeEEEECCCCCcHHHHHHHHHHHHHHhCCCcEEEEEe
Confidence 45556667777777 255889999999999999976544333346777776664
No 321
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=94.94 E-value=0.021 Score=49.33 Aligned_cols=23 Identities=22% Similarity=0.131 Sum_probs=20.6
Q ss_pred cEEEEEEcCCCCChhHHHHHHhc
Q 047336 182 LSVVAILDSIGLDKTAFTAEAYN 204 (290)
Q Consensus 182 ~~Vi~IvGmgGiGKTTLa~~vy~ 204 (290)
=..++|+|+.|+|||||...+.-
T Consensus 31 Ge~vaI~GpSGSGKSTLLniig~ 53 (226)
T COG1136 31 GEFVAIVGPSGSGKSTLLNLLGG 53 (226)
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 45899999999999999999865
No 322
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.93 E-value=0.019 Score=48.89 Aligned_cols=21 Identities=19% Similarity=0.200 Sum_probs=20.1
Q ss_pred EEEEEcCCCCChhHHHHHHhc
Q 047336 184 VVAILDSIGLDKTAFTAEAYN 204 (290)
Q Consensus 184 Vi~IvGmgGiGKTTLa~~vy~ 204 (290)
+++|+|..|.|||||++.+..
T Consensus 27 ~~~i~G~nGsGKSTLl~~l~G 47 (211)
T cd03264 27 MYGLLGPNGAGKTTLMRILAT 47 (211)
T ss_pred cEEEECCCCCCHHHHHHHHhC
Confidence 899999999999999999986
No 323
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=94.93 E-value=0.019 Score=45.94 Aligned_cols=20 Identities=15% Similarity=0.224 Sum_probs=18.4
Q ss_pred EEEEcCCCCChhHHHHHHhc
Q 047336 185 VAILDSIGLDKTAFTAEAYN 204 (290)
Q Consensus 185 i~IvGmgGiGKTTLa~~vy~ 204 (290)
|+++|..|+|||||.+.+.+
T Consensus 2 i~l~G~~g~GKTtL~~~l~~ 21 (170)
T cd01876 2 IAFAGRSNVGKSSLINALTN 21 (170)
T ss_pred EEEEcCCCCCHHHHHHHHhc
Confidence 68999999999999999983
No 324
>PRK13231 nitrogenase reductase-like protein; Reviewed
Probab=94.92 E-value=0.021 Score=50.42 Aligned_cols=23 Identities=17% Similarity=0.260 Sum_probs=19.7
Q ss_pred cEEEEEEcCCCCChhHHHHHHhc
Q 047336 182 LSVVAILDSIGLDKTAFTAEAYN 204 (290)
Q Consensus 182 ~~Vi~IvGmgGiGKTTLa~~vy~ 204 (290)
.++|+|+|-||+||||++.++-.
T Consensus 2 ~~~iav~~KGGvGKTT~a~nLA~ 24 (264)
T PRK13231 2 MKKIAIYGKGGIGKSTTVSNMAA 24 (264)
T ss_pred ceEEEEECCCCCcHHHHHHHHhc
Confidence 36899999999999999987655
No 325
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=94.92 E-value=0.037 Score=52.37 Aligned_cols=24 Identities=17% Similarity=0.151 Sum_probs=20.7
Q ss_pred CcEEEEEEcCCCCChhHHHHHHhc
Q 047336 181 QLSVVAILDSIGLDKTAFTAEAYN 204 (290)
Q Consensus 181 ~~~Vi~IvGmgGiGKTTLa~~vy~ 204 (290)
...||.++|..|+||||++.++-.
T Consensus 99 ~~~vi~lvG~~GvGKTTtaaKLA~ 122 (429)
T TIGR01425 99 KQNVIMFVGLQGSGKTTTCTKLAY 122 (429)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 468999999999999998877754
No 326
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=94.92 E-value=0.022 Score=48.77 Aligned_cols=23 Identities=26% Similarity=0.291 Sum_probs=21.1
Q ss_pred cEEEEEEcCCCCChhHHHHHHhc
Q 047336 182 LSVVAILDSIGLDKTAFTAEAYN 204 (290)
Q Consensus 182 ~~Vi~IvGmgGiGKTTLa~~vy~ 204 (290)
-.+++|+|..|.|||||++.+..
T Consensus 26 Ge~~~i~G~nGsGKSTLl~~l~G 48 (222)
T cd03224 26 GEIVALLGRNGAGKTTLLKTIMG 48 (222)
T ss_pred CeEEEEECCCCCCHHHHHHHHhC
Confidence 56999999999999999999875
No 327
>cd02026 PRK Phosphoribulokinase (PRK) is an enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. This enzyme catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=94.91 E-value=0.017 Score=51.59 Aligned_cols=21 Identities=14% Similarity=0.338 Sum_probs=19.5
Q ss_pred EEEEEcCCCCChhHHHHHHhc
Q 047336 184 VVAILDSIGLDKTAFTAEAYN 204 (290)
Q Consensus 184 Vi~IvGmgGiGKTTLa~~vy~ 204 (290)
+|+|.|..|+|||||++.+..
T Consensus 1 iigI~G~sGsGKSTl~~~L~~ 21 (273)
T cd02026 1 IIGVAGDSGCGKSTFLRRLTS 21 (273)
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999986
No 328
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.90 E-value=0.03 Score=55.54 Aligned_cols=45 Identities=9% Similarity=-0.068 Sum_probs=34.9
Q ss_pred CcccccchhHHHHHHHHhcCCCCcEEEEEEcCCCCChhHHHHHHhc
Q 047336 159 RNTVGLDDRMEELLDLLIEGPTQLSVVAILDSIGLDKTAFTAEAYN 204 (290)
Q Consensus 159 ~~~vG~e~~~~~L~~~L~~~~~~~~Vi~IvGmgGiGKTTLa~~vy~ 204 (290)
.+++|.+..+..|.+++..+. -..-+-++|+.|+||||+|+.+-+
T Consensus 16 ~eivGQe~i~~~L~~~i~~~r-i~ha~Lf~Gp~GvGKttlA~~lAk 60 (620)
T PRK14954 16 ADITAQEHITHTIQNSLRMDR-VGHGYIFSGLRGVGKTTAARVFAK 60 (620)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-CCeeEEEECCCCCCHHHHHHHHHH
Confidence 468999999999999887553 123377899999999999976543
No 329
>cd01673 dNK Deoxyribonucleoside kinase (dNK) catalyzes the phosphorylation of deoxyribonucleosides to yield corresponding monophosphates (dNMPs). This family consists of various deoxynucleoside kinases including deoxyribo- cytidine (EC 2.7.1.74), guanosine (EC 2.7.1.113), adenosine (EC 2.7.1.76), and thymidine (EC 2.7.1.21) kinases. They are key enzymes in the salvage of deoxyribonucleosides originating from extra- or intracellular breakdown of DNA.
Probab=94.90 E-value=0.017 Score=48.37 Aligned_cols=22 Identities=23% Similarity=0.392 Sum_probs=19.9
Q ss_pred EEEEEcCCCCChhHHHHHHhcc
Q 047336 184 VVAILDSIGLDKTAFTAEAYNS 205 (290)
Q Consensus 184 Vi~IvGmgGiGKTTLa~~vy~d 205 (290)
+|+|-|+.|+||||+++.+.+.
T Consensus 1 ~I~ieG~~GsGKSTl~~~L~~~ 22 (193)
T cd01673 1 VIVVEGNIGAGKSTLAKELAEH 22 (193)
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 4889999999999999999874
No 330
>cd01864 Rab19 Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=94.90 E-value=0.021 Score=46.19 Aligned_cols=23 Identities=13% Similarity=0.169 Sum_probs=19.6
Q ss_pred cEEEEEEcCCCCChhHHHHHHhc
Q 047336 182 LSVVAILDSIGLDKTAFTAEAYN 204 (290)
Q Consensus 182 ~~Vi~IvGmgGiGKTTLa~~vy~ 204 (290)
..-|.|+|.+|+|||||+..+..
T Consensus 3 ~~kv~vvG~~~~GKTsli~~l~~ 25 (165)
T cd01864 3 LFKIILIGDSNVGKTCVVQRFKS 25 (165)
T ss_pred eeEEEEECCCCCCHHHHHHHHhh
Confidence 35678999999999999988754
No 331
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=94.90 E-value=0.021 Score=48.85 Aligned_cols=23 Identities=26% Similarity=0.193 Sum_probs=21.1
Q ss_pred cEEEEEEcCCCCChhHHHHHHhc
Q 047336 182 LSVVAILDSIGLDKTAFTAEAYN 204 (290)
Q Consensus 182 ~~Vi~IvGmgGiGKTTLa~~vy~ 204 (290)
-.+++|+|..|.|||||.+.+..
T Consensus 31 G~~~~i~G~nGsGKSTLl~~i~G 53 (221)
T TIGR02211 31 GEIVAIVGSSGSGKSTLLHLLGG 53 (221)
T ss_pred CcEEEEECCCCCCHHHHHHHHhC
Confidence 45899999999999999999976
No 332
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=94.90 E-value=0.053 Score=55.07 Aligned_cols=46 Identities=13% Similarity=0.269 Sum_probs=37.1
Q ss_pred CcccccchhHHHHHHHHhcC-----C--CCcEEEEEEcCCCCChhHHHHHHhc
Q 047336 159 RNTVGLDDRMEELLDLLIEG-----P--TQLSVVAILDSIGLDKTAFTAEAYN 204 (290)
Q Consensus 159 ~~~vG~e~~~~~L~~~L~~~-----~--~~~~Vi~IvGmgGiGKTTLa~~vy~ 204 (290)
..++|.+..++.|.+.+... + ....++-.+|+.|+|||+||+.+..
T Consensus 454 ~~v~GQ~~ai~~l~~~i~~~~~g~~~~~~p~~~~lf~Gp~GvGKT~lA~~la~ 506 (731)
T TIGR02639 454 AKIFGQDEAIDSLVSSIKRSRAGLGNPNKPVGSFLFTGPTGVGKTELAKQLAE 506 (731)
T ss_pred cceeCcHHHHHHHHHHHHHHhcCCCCCCCCceeEEEECCCCccHHHHHHHHHH
Confidence 45889999999999888641 1 2245688999999999999999987
No 333
>PF08423 Rad51: Rad51; InterPro: IPR013632 This domain is found at the C terminus of the DNA repair and recombination protein Rad51. It is critical for DNA binding []. Rad51 is a homologue of the bacterial RecA protein. Rad51 and RecA share a core ATPase domain.; PDB: 2ZUC_A 2Z43_C 2ZUD_B 2DFL_A 2ZUB_A 2BKE_A 2KZ3_A 2CVH_B 2CVF_B 1SZP_D ....
Probab=94.90 E-value=0.07 Score=47.09 Aligned_cols=63 Identities=16% Similarity=0.210 Sum_probs=42.9
Q ss_pred HHHhcCCCCcEEEEEEcCCCCChhHHHHHHhccccccccC----CeeEEEECCCCCCHHHHHHHHHHH
Q 047336 173 DLLIEGPTQLSVVAILDSIGLDKTAFTAEAYNSSYVKHYF----DYLAWIPAPYQYDPDQILDTVTWL 236 (290)
Q Consensus 173 ~~L~~~~~~~~Vi~IvGmgGiGKTTLa~~vy~d~~v~~~F----~~~~wV~vs~~~~~~~ll~~Il~~ 236 (290)
+.|..+=..-.|+=|+|.+|+|||.|+-.+.-+..+.... ..++||+-..+|+..++.+ |++.
T Consensus 29 ~~L~GGi~~g~itEi~G~~gsGKTql~l~l~~~~~l~~~~~g~~~~vvyidTe~~f~~~Rl~~-i~~~ 95 (256)
T PF08423_consen 29 ELLGGGIPTGSITEIVGESGSGKTQLCLQLAVNVQLPEEIGGLGGKVVYIDTEGTFSPERLQQ-IAER 95 (256)
T ss_dssp HHTTSSEETTSEEEEEESTTSSHHHHHHHHHHHTTSGGCTTSSSSEEEEEESSSSS-HHHHHH-HHHH
T ss_pred HhhCCCCCCCcEEEEEEecccccchHHHHHHHHhhcccccccCCCceEEEeCCCCCCHHHHHH-Hhhc
Confidence 3343332446789999999999999998776433332221 3489999999999888754 5554
No 334
>PRK13235 nifH nitrogenase reductase; Reviewed
Probab=94.90 E-value=0.019 Score=51.08 Aligned_cols=20 Identities=30% Similarity=0.335 Sum_probs=17.1
Q ss_pred EEEEEEcCCCCChhHHHHHH
Q 047336 183 SVVAILDSIGLDKTAFTAEA 202 (290)
Q Consensus 183 ~Vi~IvGmgGiGKTTLa~~v 202 (290)
++|+|.|-||+||||++-.+
T Consensus 2 ~~iav~~KGGVGKTT~~~nL 21 (274)
T PRK13235 2 RKVAIYGKGGIGKSTTTQNT 21 (274)
T ss_pred CEEEEeCCCCccHHHHHHHH
Confidence 58999999999999977654
No 335
>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu
Probab=94.89 E-value=0.022 Score=45.66 Aligned_cols=22 Identities=23% Similarity=0.137 Sum_probs=19.6
Q ss_pred EEEEcCCCCChhHHHHHHhccc
Q 047336 185 VAILDSIGLDKTAFTAEAYNSS 206 (290)
Q Consensus 185 i~IvGmgGiGKTTLa~~vy~d~ 206 (290)
|+|+|.+|+|||||...+.+..
T Consensus 2 i~iiG~~~~GKssli~~~~~~~ 23 (158)
T cd00878 2 ILILGLDGAGKTTILYKLKLGE 23 (158)
T ss_pred EEEEcCCCCCHHHHHHHHhcCC
Confidence 6899999999999999997753
No 336
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=94.89 E-value=0.083 Score=45.74 Aligned_cols=46 Identities=20% Similarity=0.158 Sum_probs=32.6
Q ss_pred HhcCCCCcEEEEEEcCCCCChhHHHHHH-hccccccccCCeeEEEECCCC
Q 047336 175 LIEGPTQLSVVAILDSIGLDKTAFTAEA-YNSSYVKHYFDYLAWIPAPYQ 223 (290)
Q Consensus 175 L~~~~~~~~Vi~IvGmgGiGKTTLa~~v-y~d~~v~~~F~~~~wV~vs~~ 223 (290)
|..+=+.-+++.|+|.+|+|||||+.++ |+ .++. =..++|++...+
T Consensus 18 l~gG~~~g~~~~i~G~~GsGKt~l~~~~~~~--~~~~-g~~~~y~~~e~~ 64 (234)
T PRK06067 18 LGGGIPFPSLILIEGDHGTGKSVLSQQFVYG--ALKQ-GKKVYVITTENT 64 (234)
T ss_pred hCCCCcCCcEEEEECCCCCChHHHHHHHHHH--HHhC-CCEEEEEEcCCC
Confidence 3344466789999999999999999887 44 2222 235777877654
No 337
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=94.89 E-value=0.022 Score=48.29 Aligned_cols=24 Identities=21% Similarity=0.062 Sum_probs=21.5
Q ss_pred cEEEEEEcCCCCChhHHHHHHhcc
Q 047336 182 LSVVAILDSIGLDKTAFTAEAYNS 205 (290)
Q Consensus 182 ~~Vi~IvGmgGiGKTTLa~~vy~d 205 (290)
-.+++|+|..|.|||||++.+..-
T Consensus 27 Ge~~~l~G~nGsGKSTLl~~l~G~ 50 (204)
T PRK13538 27 GELVQIEGPNGAGKTSLLRILAGL 50 (204)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCC
Confidence 458999999999999999999863
No 338
>PF06564 YhjQ: YhjQ protein; InterPro: IPR017746 The YhjQ protein is encoded immediately upstream of bacterial cellulose synthase (bcs) genes in a broad range of bacteria, including both copies of the bcs locus in Klebsiella pneumoniae, and in several species is clearly part of the bcs operon. It is identified as a probable component of the bacterial cellulose metabolic process not only by gene location, but also by partial phylogenetic profiling, or Haft-Selengut algorithm [], based on a bacterial cellulose biosynthesis genome property profile. Cellulose plays an important role in biofilm formation and structural integrity in some bacteria. Mutants in yhjQ in Escherichia coli, show altered morphology an growth, but the function of YhjQ has not yet been determined.
Probab=94.88 E-value=0.021 Score=49.89 Aligned_cols=22 Identities=36% Similarity=0.407 Sum_probs=18.7
Q ss_pred EEEEEEcC-CCCChhHHHHHHhc
Q 047336 183 SVVAILDS-IGLDKTAFTAEAYN 204 (290)
Q Consensus 183 ~Vi~IvGm-gGiGKTTLa~~vy~ 204 (290)
++|+|+|. ||+|||||+-.+--
T Consensus 2 ~~iai~s~kGGvG~TTltAnLA~ 24 (243)
T PF06564_consen 2 KVIAIVSPKGGVGKTTLTANLAW 24 (243)
T ss_pred cEEEEecCCCCCCHHHHHHHHHH
Confidence 68999998 99999999876643
No 339
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=94.88 E-value=0.021 Score=49.02 Aligned_cols=24 Identities=8% Similarity=0.149 Sum_probs=21.5
Q ss_pred cEEEEEEcCCCCChhHHHHHHhcc
Q 047336 182 LSVVAILDSIGLDKTAFTAEAYNS 205 (290)
Q Consensus 182 ~~Vi~IvGmgGiGKTTLa~~vy~d 205 (290)
-.+++|+|..|.|||||.+.+..-
T Consensus 31 Ge~~~i~G~nGsGKSTLl~~l~G~ 54 (228)
T cd03257 31 GETLGLVGESGSGKSTLARAILGL 54 (228)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 468999999999999999999763
No 340
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.87 E-value=0.022 Score=48.80 Aligned_cols=24 Identities=17% Similarity=0.084 Sum_probs=21.5
Q ss_pred cEEEEEEcCCCCChhHHHHHHhcc
Q 047336 182 LSVVAILDSIGLDKTAFTAEAYNS 205 (290)
Q Consensus 182 ~~Vi~IvGmgGiGKTTLa~~vy~d 205 (290)
-.+++|+|..|.|||||.+.+..-
T Consensus 26 Ge~~~i~G~nGsGKSTLl~~i~G~ 49 (220)
T cd03265 26 GEIFGLLGPNGAGKTTTIKMLTTL 49 (220)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 468999999999999999999863
No 341
>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....
Probab=94.86 E-value=0.022 Score=45.74 Aligned_cols=22 Identities=18% Similarity=0.398 Sum_probs=19.2
Q ss_pred EEEEcCCCCChhHHHHHHhccc
Q 047336 185 VAILDSIGLDKTAFTAEAYNSS 206 (290)
Q Consensus 185 i~IvGmgGiGKTTLa~~vy~d~ 206 (290)
|.++|.+|+|||||++.+.+..
T Consensus 2 i~vvG~~~vGKtsl~~~~~~~~ 23 (162)
T PF00071_consen 2 IVVVGDSGVGKTSLINRLINGE 23 (162)
T ss_dssp EEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEECCCCCCHHHHHHHHHhhc
Confidence 6899999999999998887743
No 342
>PTZ00088 adenylate kinase 1; Provisional
Probab=94.86 E-value=0.02 Score=49.72 Aligned_cols=21 Identities=14% Similarity=0.298 Sum_probs=19.0
Q ss_pred EEEEEcCCCCChhHHHHHHhc
Q 047336 184 VVAILDSIGLDKTAFTAEAYN 204 (290)
Q Consensus 184 Vi~IvGmgGiGKTTLa~~vy~ 204 (290)
-|.|+|++|+||||+|+.+-+
T Consensus 8 rIvl~G~PGsGK~T~a~~La~ 28 (229)
T PTZ00088 8 KIVLFGAPGVGKGTFAEILSK 28 (229)
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 388999999999999999866
No 343
>PRK02496 adk adenylate kinase; Provisional
Probab=94.85 E-value=0.025 Score=47.07 Aligned_cols=21 Identities=14% Similarity=0.063 Sum_probs=18.7
Q ss_pred EEEEEcCCCCChhHHHHHHhc
Q 047336 184 VVAILDSIGLDKTAFTAEAYN 204 (290)
Q Consensus 184 Vi~IvGmgGiGKTTLa~~vy~ 204 (290)
.|.|+|++|+||||+|+.+-.
T Consensus 3 ~i~i~G~pGsGKst~a~~la~ 23 (184)
T PRK02496 3 RLIFLGPPGAGKGTQAVVLAE 23 (184)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999998865
No 344
>TIGR02528 EutP ethanolamine utilization protein, EutP. This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.
Probab=94.85 E-value=0.023 Score=44.73 Aligned_cols=23 Identities=22% Similarity=0.339 Sum_probs=19.8
Q ss_pred EEEEEcCCCCChhHHHHHHhccc
Q 047336 184 VVAILDSIGLDKTAFTAEAYNSS 206 (290)
Q Consensus 184 Vi~IvGmgGiGKTTLa~~vy~d~ 206 (290)
-|.|+|.+|+|||||...+.+..
T Consensus 2 kv~liG~~~vGKSsL~~~l~~~~ 24 (142)
T TIGR02528 2 RIMFIGSVGCGKTTLTQALQGEE 24 (142)
T ss_pred eEEEECCCCCCHHHHHHHHcCCc
Confidence 37899999999999999887643
No 345
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=94.85 E-value=0.029 Score=55.92 Aligned_cols=45 Identities=20% Similarity=0.230 Sum_probs=36.9
Q ss_pred CcccccchhHHHHHHHHhcCCCCcEEEEEEcCCCCChhHHHHHHhc
Q 047336 159 RNTVGLDDRMEELLDLLIEGPTQLSVVAILDSIGLDKTAFTAEAYN 204 (290)
Q Consensus 159 ~~~vG~e~~~~~L~~~L~~~~~~~~Vi~IvGmgGiGKTTLa~~vy~ 204 (290)
.+++|.+..+..|.+++..+. -..-+-++|..|+||||+|+.+-+
T Consensus 16 ddIIGQe~vv~~L~~ai~~~r-l~Ha~Lf~GP~GvGKTTlAriLAk 60 (709)
T PRK08691 16 ADLVGQEHVVKALQNALDEGR-LHHAYLLTGTRGVGKTTIARILAK 60 (709)
T ss_pred HHHcCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCcHHHHHHHHHH
Confidence 469999999999999988653 123567899999999999987755
No 346
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=94.84 E-value=0.082 Score=44.00 Aligned_cols=36 Identities=14% Similarity=0.041 Sum_probs=24.0
Q ss_pred cEEEEEEcCCCCChhHHHHHHhccccccccCCeeEEEE
Q 047336 182 LSVVAILDSIGLDKTAFTAEAYNSSYVKHYFDYLAWIP 219 (290)
Q Consensus 182 ~~Vi~IvGmgGiGKTTLa~~vy~d~~v~~~F~~~~wV~ 219 (290)
-.-+.++|..|+|||.||..+-+. ...+=-.+.|++
T Consensus 47 ~~~l~l~G~~G~GKThLa~ai~~~--~~~~g~~v~f~~ 82 (178)
T PF01695_consen 47 GENLILYGPPGTGKTHLAVAIANE--AIRKGYSVLFIT 82 (178)
T ss_dssp --EEEEEESTTSSHHHHHHHHHHH--HHHTT--EEEEE
T ss_pred CeEEEEEhhHhHHHHHHHHHHHHH--hccCCcceeEee
Confidence 345889999999999999999873 222212356665
No 347
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=94.84 E-value=0.033 Score=54.41 Aligned_cols=43 Identities=21% Similarity=0.230 Sum_probs=35.0
Q ss_pred cccccchhHHHHHHHHhcCCCCcEEEEEEcCCCCChhHHHHHHhc
Q 047336 160 NTVGLDDRMEELLDLLIEGPTQLSVVAILDSIGLDKTAFTAEAYN 204 (290)
Q Consensus 160 ~~vG~e~~~~~L~~~L~~~~~~~~Vi~IvGmgGiGKTTLa~~vy~ 204 (290)
+++|.+..++.+...+.... ..-+-|+|..|+||||+|+.+++
T Consensus 66 ~iiGqs~~i~~l~~al~~~~--~~~vLi~Ge~GtGKt~lAr~i~~ 108 (531)
T TIGR02902 66 EIIGQEEGIKALKAALCGPN--PQHVIIYGPPGVGKTAAARLVLE 108 (531)
T ss_pred HeeCcHHHHHHHHHHHhCCC--CceEEEECCCCCCHHHHHHHHHH
Confidence 58999999999888765432 33456899999999999999986
No 348
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=94.84 E-value=0.022 Score=49.97 Aligned_cols=24 Identities=29% Similarity=0.371 Sum_probs=21.6
Q ss_pred cEEEEEEcCCCCChhHHHHHHhcc
Q 047336 182 LSVVAILDSIGLDKTAFTAEAYNS 205 (290)
Q Consensus 182 ~~Vi~IvGmgGiGKTTLa~~vy~d 205 (290)
-.+++|+|..|+|||||++.+...
T Consensus 25 Ge~~~i~G~NGsGKSTLlk~L~G~ 48 (246)
T cd03237 25 SEVIGILGPNGIGKTTFIKMLAGV 48 (246)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 468999999999999999999873
No 349
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.83 E-value=0.033 Score=54.34 Aligned_cols=45 Identities=16% Similarity=0.154 Sum_probs=36.0
Q ss_pred CcccccchhHHHHHHHHhcCCCCcEEEEEEcCCCCChhHHHHHHhc
Q 047336 159 RNTVGLDDRMEELLDLLIEGPTQLSVVAILDSIGLDKTAFTAEAYN 204 (290)
Q Consensus 159 ~~~vG~e~~~~~L~~~L~~~~~~~~Vi~IvGmgGiGKTTLa~~vy~ 204 (290)
.+++|.+..++.|.+++..+.- ...+-++|+.|+||||+|+.+-+
T Consensus 16 ~divGq~~v~~~L~~~i~~~~~-~ha~Lf~Gp~G~GKTt~A~~lAk 60 (527)
T PRK14969 16 SELVGQEHVVRALTNALEQQRL-HHAYLFTGTRGVGKTTLARILAK 60 (527)
T ss_pred HHhcCcHHHHHHHHHHHHcCCC-CEEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999886541 23456899999999999988754
No 350
>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria.
Probab=94.83 E-value=0.036 Score=50.95 Aligned_cols=44 Identities=20% Similarity=0.222 Sum_probs=34.8
Q ss_pred CcccccchhHHHHHHHHhcCCCCcEEEEEEcCCCCChhHHHHHHhc
Q 047336 159 RNTVGLDDRMEELLDLLIEGPTQLSVVAILDSIGLDKTAFTAEAYN 204 (290)
Q Consensus 159 ~~~vG~e~~~~~L~~~L~~~~~~~~Vi~IvGmgGiGKTTLa~~vy~ 204 (290)
+.+||.+..+..|.-.+.+. ...-+.|.|..|+|||||++.+..
T Consensus 4 ~~ivgq~~~~~al~~~~~~~--~~g~vli~G~~G~gKttl~r~~~~ 47 (337)
T TIGR02030 4 TAIVGQDEMKLALLLNVIDP--KIGGVMVMGDRGTGKSTAVRALAA 47 (337)
T ss_pred cccccHHHHHHHHHHHhcCC--CCCeEEEEcCCCCCHHHHHHHHHH
Confidence 45899999988887666643 355577999999999999999853
No 351
>cd04124 RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b
Probab=94.83 E-value=0.023 Score=45.92 Aligned_cols=20 Identities=10% Similarity=0.210 Sum_probs=17.4
Q ss_pred EEEEcCCCCChhHHHHHHhc
Q 047336 185 VAILDSIGLDKTAFTAEAYN 204 (290)
Q Consensus 185 i~IvGmgGiGKTTLa~~vy~ 204 (290)
|.++|.+|+|||||++.+.+
T Consensus 3 i~vvG~~~vGKTsli~~~~~ 22 (161)
T cd04124 3 IILLGDSAVGKSKLVERFLM 22 (161)
T ss_pred EEEECCCCCCHHHHHHHHHh
Confidence 67999999999999987654
No 352
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=94.82 E-value=0.1 Score=45.37 Aligned_cols=56 Identities=18% Similarity=0.250 Sum_probs=37.9
Q ss_pred HHHhcCCCCcEEEEEEcCCCCChhHHHHHH-hccccccccCCeeEEEECCCCCCHHHHHHHH
Q 047336 173 DLLIEGPTQLSVVAILDSIGLDKTAFTAEA-YNSSYVKHYFDYLAWIPAPYQYDPDQILDTV 233 (290)
Q Consensus 173 ~~L~~~~~~~~Vi~IvGmgGiGKTTLa~~v-y~d~~v~~~F~~~~wV~vs~~~~~~~ll~~I 233 (290)
++|..+=+.-+++-|.|.+|+||||||.++ |+ .. ..=..++||+... ++..+.+.+
T Consensus 12 ~~l~GG~~~gs~~lI~G~pGsGKT~la~~~l~~--~~-~~ge~~lyvs~ee--~~~~i~~~~ 68 (237)
T TIGR03877 12 EILHGGIPERNVVLLSGGPGTGKSIFSQQFLWN--GL-QMGEPGIYVALEE--HPVQVRRNM 68 (237)
T ss_pred HHhcCCCcCCeEEEEEcCCCCCHHHHHHHHHHH--HH-HcCCcEEEEEeeC--CHHHHHHHH
Confidence 334445456789999999999999999764 55 22 2345688888765 344555543
No 353
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=94.82 E-value=0.023 Score=48.94 Aligned_cols=24 Identities=13% Similarity=-0.009 Sum_probs=21.5
Q ss_pred cEEEEEEcCCCCChhHHHHHHhcc
Q 047336 182 LSVVAILDSIGLDKTAFTAEAYNS 205 (290)
Q Consensus 182 ~~Vi~IvGmgGiGKTTLa~~vy~d 205 (290)
-.+++|+|..|.|||||++.+...
T Consensus 33 Ge~~~i~G~nGsGKSTLl~~l~G~ 56 (225)
T PRK10247 33 GEFKLITGPSGCGKSTLLKIVASL 56 (225)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcc
Confidence 468999999999999999999873
No 354
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=94.81 E-value=0.043 Score=53.32 Aligned_cols=57 Identities=19% Similarity=0.257 Sum_probs=43.3
Q ss_pred CcccccchhHHHHHHHHhc---CCCCcEEEEEEcCCCCChhHHHHHHhccccccccCCeeEEEE
Q 047336 159 RNTVGLDDRMEELLDLLIE---GPTQLSVVAILDSIGLDKTAFTAEAYNSSYVKHYFDYLAWIP 219 (290)
Q Consensus 159 ~~~vG~e~~~~~L~~~L~~---~~~~~~Vi~IvGmgGiGKTTLa~~vy~d~~v~~~F~~~~wV~ 219 (290)
.+++--..-.+++..||.. +....+++-+.|++|+||||.++.+.+.. .|+.+=|.+
T Consensus 19 ~eLavhkkKv~eV~~wl~~~~~~~~~~~iLlLtGP~G~GKtttv~~La~el----g~~v~Ew~n 78 (519)
T PF03215_consen 19 DELAVHKKKVEEVRSWLEEMFSGSSPKRILLLTGPSGCGKTTTVKVLAKEL----GFEVQEWIN 78 (519)
T ss_pred HHhhccHHHHHHHHHHHHHHhccCCCcceEEEECCCCCCHHHHHHHHHHHh----CCeeEEecC
Confidence 4566667788899999975 23345688999999999999999998732 366667764
No 355
>TIGR01281 DPOR_bchL light-independent protochlorophyllide reductase, iron-sulfur ATP-binding protein. The BchL peptide (ChlL in chloroplast and cyanobacteria) is an ATP-binding iron-sulfur protein of the dark form protochlorophyllide reductase, an enzyme similar to nitrogenase. This subunit resembles the nitrogenase NifH subunit.
Probab=94.81 E-value=0.021 Score=50.46 Aligned_cols=19 Identities=16% Similarity=0.370 Sum_probs=16.2
Q ss_pred EEEEEcCCCCChhHHHHHH
Q 047336 184 VVAILDSIGLDKTAFTAEA 202 (290)
Q Consensus 184 Vi~IvGmgGiGKTTLa~~v 202 (290)
+|+|.|-||+||||++-.+
T Consensus 2 ~i~~~gKGGVGKTT~~~nL 20 (268)
T TIGR01281 2 ILAVYGKGGIGKSTTSSNL 20 (268)
T ss_pred EEEEEcCCcCcHHHHHHHH
Confidence 6889999999999977654
No 356
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=94.81 E-value=0.024 Score=47.98 Aligned_cols=23 Identities=17% Similarity=0.056 Sum_probs=21.0
Q ss_pred cEEEEEEcCCCCChhHHHHHHhc
Q 047336 182 LSVVAILDSIGLDKTAFTAEAYN 204 (290)
Q Consensus 182 ~~Vi~IvGmgGiGKTTLa~~vy~ 204 (290)
=.+++|+|..|.|||||.+.+..
T Consensus 24 Ge~~~i~G~nGsGKSTLl~~l~G 46 (206)
T TIGR03608 24 GKMYAIIGESGSGKSTLLNIIGL 46 (206)
T ss_pred CcEEEEECCCCCCHHHHHHHHhc
Confidence 35899999999999999999986
No 357
>cd01898 Obg Obg subfamily. The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.
Probab=94.81 E-value=0.022 Score=46.11 Aligned_cols=21 Identities=14% Similarity=0.200 Sum_probs=18.9
Q ss_pred EEEEcCCCCChhHHHHHHhcc
Q 047336 185 VAILDSIGLDKTAFTAEAYNS 205 (290)
Q Consensus 185 i~IvGmgGiGKTTLa~~vy~d 205 (290)
|+|+|..|+|||||.+.+.+.
T Consensus 3 v~ivG~~~~GKStl~~~l~~~ 23 (170)
T cd01898 3 VGLVGLPNAGKSTLLSAISNA 23 (170)
T ss_pred eEEECCCCCCHHHHHHHHhcC
Confidence 789999999999999998753
No 358
>PRK10865 protein disaggregation chaperone; Provisional
Probab=94.80 E-value=0.053 Score=56.01 Aligned_cols=46 Identities=15% Similarity=0.297 Sum_probs=37.1
Q ss_pred CcccccchhHHHHHHHHhcC-------CCCcEEEEEEcCCCCChhHHHHHHhc
Q 047336 159 RNTVGLDDRMEELLDLLIEG-------PTQLSVVAILDSIGLDKTAFTAEAYN 204 (290)
Q Consensus 159 ~~~vG~e~~~~~L~~~L~~~-------~~~~~Vi~IvGmgGiGKTTLa~~vy~ 204 (290)
..++|.+...+.|.+.+... +....++-++|+.|+||||||+.+.+
T Consensus 568 ~~viGQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~Lf~Gp~G~GKT~lA~aLa~ 620 (857)
T PRK10865 568 HRVIGQNEAVEAVSNAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELCKALAN 620 (857)
T ss_pred CeEeCCHHHHHHHHHHHHHHHhcccCCCCCCceEEEECCCCCCHHHHHHHHHH
Confidence 45899999999999888631 12235788999999999999999986
No 359
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=94.80 E-value=0.043 Score=48.22 Aligned_cols=50 Identities=16% Similarity=0.238 Sum_probs=38.9
Q ss_pred CCCcccccchhHHH---HHHHHhc----CCCCcEEEEEEcCCCCChhHHHHHHhccc
Q 047336 157 KNRNTVGLDDRMEE---LLDLLIE----GPTQLSVVAILDSIGLDKTAFTAEAYNSS 206 (290)
Q Consensus 157 ~~~~~vG~e~~~~~---L~~~L~~----~~~~~~Vi~IvGmgGiGKTTLa~~vy~d~ 206 (290)
.-+++||.++.+.+ |++.|.. ++...+-|-.+|++|.|||.+|+.+-|..
T Consensus 119 t~ddViGqEeAK~kcrli~~yLenPe~Fg~WAPknVLFyGppGTGKTm~Akalane~ 175 (368)
T COG1223 119 TLDDVIGQEEAKRKCRLIMEYLENPERFGDWAPKNVLFYGPPGTGKTMMAKALANEA 175 (368)
T ss_pred cHhhhhchHHHHHHHHHHHHHhhChHHhcccCcceeEEECCCCccHHHHHHHHhccc
Confidence 34679998877654 5666654 35677888899999999999999999844
No 360
>PRK15453 phosphoribulokinase; Provisional
Probab=94.80 E-value=0.026 Score=50.33 Aligned_cols=25 Identities=16% Similarity=0.210 Sum_probs=21.8
Q ss_pred CCcEEEEEEcCCCCChhHHHHHHhc
Q 047336 180 TQLSVVAILDSIGLDKTAFTAEAYN 204 (290)
Q Consensus 180 ~~~~Vi~IvGmgGiGKTTLa~~vy~ 204 (290)
.+..+|+|.|..|+||||+|+.+.+
T Consensus 3 ~k~piI~ItG~SGsGKTTva~~l~~ 27 (290)
T PRK15453 3 AKHPIIAVTGSSGAGTTTVKRAFEK 27 (290)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHH
Confidence 3468999999999999999998764
No 361
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=94.80 E-value=0.02 Score=50.12 Aligned_cols=20 Identities=20% Similarity=0.370 Sum_probs=18.3
Q ss_pred EEEEcCCCCChhHHHHHHhc
Q 047336 185 VAILDSIGLDKTAFTAEAYN 204 (290)
Q Consensus 185 i~IvGmgGiGKTTLa~~vy~ 204 (290)
|.++|++|+||||+|+.+..
T Consensus 2 Ivl~G~pGSGKST~a~~La~ 21 (249)
T TIGR03574 2 IILTGLPGVGKSTFSKELAK 21 (249)
T ss_pred EEEEcCCCCCHHHHHHHHHH
Confidence 67899999999999999876
No 362
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=94.79 E-value=0.023 Score=49.12 Aligned_cols=23 Identities=22% Similarity=0.146 Sum_probs=21.0
Q ss_pred cEEEEEEcCCCCChhHHHHHHhc
Q 047336 182 LSVVAILDSIGLDKTAFTAEAYN 204 (290)
Q Consensus 182 ~~Vi~IvGmgGiGKTTLa~~vy~ 204 (290)
-.+++|+|..|.|||||++.+..
T Consensus 35 Ge~~~l~G~nGsGKSTLl~~l~G 57 (233)
T PRK11629 35 GEMMAIVGSSGSGKSTLLHLLGG 57 (233)
T ss_pred CcEEEEECCCCCCHHHHHHHHhc
Confidence 45899999999999999999976
No 363
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.79 E-value=0.023 Score=49.10 Aligned_cols=23 Identities=13% Similarity=0.164 Sum_probs=21.0
Q ss_pred cEEEEEEcCCCCChhHHHHHHhc
Q 047336 182 LSVVAILDSIGLDKTAFTAEAYN 204 (290)
Q Consensus 182 ~~Vi~IvGmgGiGKTTLa~~vy~ 204 (290)
=.+++|+|..|.|||||++.+..
T Consensus 31 Ge~~~l~G~nGsGKSTLl~~l~G 53 (233)
T cd03258 31 GEIFGIIGRSGAGKSTLIRCING 53 (233)
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 45899999999999999999976
No 364
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=94.79 E-value=0.024 Score=48.56 Aligned_cols=24 Identities=25% Similarity=0.206 Sum_probs=21.6
Q ss_pred cEEEEEEcCCCCChhHHHHHHhcc
Q 047336 182 LSVVAILDSIGLDKTAFTAEAYNS 205 (290)
Q Consensus 182 ~~Vi~IvGmgGiGKTTLa~~vy~d 205 (290)
-.+++|+|..|.|||||.+.+..-
T Consensus 13 Ge~~~l~G~NGsGKSTLlk~i~Gl 36 (213)
T PRK15177 13 HEHIGILAAPGSGKTTLTRLLCGL 36 (213)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 468999999999999999999873
No 365
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=94.78 E-value=0.048 Score=44.62 Aligned_cols=36 Identities=22% Similarity=0.374 Sum_probs=29.2
Q ss_pred hhHHHHHHHHhcCCCCcEEEEEEcCCCCChhHHHHHHhccc
Q 047336 166 DRMEELLDLLIEGPTQLSVVAILDSIGLDKTAFTAEAYNSS 206 (290)
Q Consensus 166 ~~~~~L~~~L~~~~~~~~Vi~IvGmgGiGKTTLa~~vy~d~ 206 (290)
+..++|.++|.. +++.++|..|+|||||...+..+.
T Consensus 24 ~g~~~l~~~l~~-----k~~vl~G~SGvGKSSLiN~L~~~~ 59 (161)
T PF03193_consen 24 EGIEELKELLKG-----KTSVLLGQSGVGKSSLINALLPEA 59 (161)
T ss_dssp TTHHHHHHHHTT-----SEEEEECSTTSSHHHHHHHHHTSS
T ss_pred cCHHHHHHHhcC-----CEEEEECCCCCCHHHHHHHHHhhc
Confidence 456777777762 578899999999999999998864
No 366
>KOG3079 consensus Uridylate kinase/adenylate kinase [Nucleotide transport and metabolism]
Probab=94.78 E-value=0.13 Score=42.72 Aligned_cols=44 Identities=9% Similarity=0.133 Sum_probs=34.4
Q ss_pred CCcEEEEEEcCCCCChhHHHHHHhccccccccCCeeEEEECCCCCCHHHHHHHHHHH
Q 047336 180 TQLSVVAILDSIGLDKTAFTAEAYNSSYVKHYFDYLAWIPAPYQYDPDQILDTVTWL 236 (290)
Q Consensus 180 ~~~~Vi~IvGmgGiGKTTLa~~vy~d~~v~~~F~~~~wV~vs~~~~~~~ll~~Il~~ 236 (290)
...+||-|.|-+|.||-|....+-. +|+ |+++| .-+||++....
T Consensus 6 ~~~~IifVlGGPGsgKgTqC~kiv~------ky~---ftHlS----aGdLLR~E~~~ 49 (195)
T KOG3079|consen 6 DKPPIIFVLGGPGSGKGTQCEKIVE------KYG---FTHLS----AGDLLRAEIAS 49 (195)
T ss_pred cCCCEEEEEcCCCCCcchHHHHHHH------HcC---ceeec----HHHHHHHHHcc
Confidence 4688999999999999999887765 455 66655 56788877655
No 367
>cd00157 Rho Rho (Ras homology) family. Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein
Probab=94.77 E-value=0.024 Score=45.84 Aligned_cols=22 Identities=9% Similarity=0.151 Sum_probs=19.2
Q ss_pred EEEEcCCCCChhHHHHHHhccc
Q 047336 185 VAILDSIGLDKTAFTAEAYNSS 206 (290)
Q Consensus 185 i~IvGmgGiGKTTLa~~vy~d~ 206 (290)
|.|+|.+|+|||||++.+.+..
T Consensus 3 i~i~G~~~~GKSsli~~l~~~~ 24 (171)
T cd00157 3 IVVVGDGAVGKTCLLISYTTGK 24 (171)
T ss_pred EEEECCCCCCHHHHHHHHHhCC
Confidence 6799999999999999887653
No 368
>PLN03046 D-glycerate 3-kinase; Provisional
Probab=94.77 E-value=0.029 Score=52.71 Aligned_cols=25 Identities=16% Similarity=0.065 Sum_probs=22.2
Q ss_pred CCcEEEEEEcCCCCChhHHHHHHhc
Q 047336 180 TQLSVVAILDSIGLDKTAFTAEAYN 204 (290)
Q Consensus 180 ~~~~Vi~IvGmgGiGKTTLa~~vy~ 204 (290)
...-+|+|.|..|.|||||++.+..
T Consensus 210 ~~PlIIGIsG~qGSGKSTLa~~L~~ 234 (460)
T PLN03046 210 IPPLVIGFSAPQGCGKTTLVFALDY 234 (460)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 3578999999999999999999854
No 369
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.77 E-value=0.032 Score=55.28 Aligned_cols=45 Identities=16% Similarity=0.142 Sum_probs=36.3
Q ss_pred CcccccchhHHHHHHHHhcCCCCcEEEEEEcCCCCChhHHHHHHhc
Q 047336 159 RNTVGLDDRMEELLDLLIEGPTQLSVVAILDSIGLDKTAFTAEAYN 204 (290)
Q Consensus 159 ~~~vG~e~~~~~L~~~L~~~~~~~~Vi~IvGmgGiGKTTLa~~vy~ 204 (290)
.++||.+.-++.|.+++..+. -...+-++|..|+||||+|+.+-+
T Consensus 16 ddVIGQe~vv~~L~~al~~gR-LpHA~LFtGP~GvGKTTLAriLAk 60 (700)
T PRK12323 16 TTLVGQEHVVRALTHALEQQR-LHHAYLFTGTRGVGKTTLSRILAK 60 (700)
T ss_pred HHHcCcHHHHHHHHHHHHhCC-CceEEEEECCCCCCHHHHHHHHHH
Confidence 469999999999999998654 123456799999999999987754
No 370
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=94.77 E-value=0.024 Score=49.96 Aligned_cols=23 Identities=17% Similarity=0.173 Sum_probs=21.1
Q ss_pred cEEEEEEcCCCCChhHHHHHHhc
Q 047336 182 LSVVAILDSIGLDKTAFTAEAYN 204 (290)
Q Consensus 182 ~~Vi~IvGmgGiGKTTLa~~vy~ 204 (290)
=.+++|+|..|.|||||++.+..
T Consensus 27 Ge~~~i~G~nGsGKSTLl~~l~G 49 (255)
T PRK11248 27 GELLVVLGPSGCGKTTLLNLIAG 49 (255)
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 46899999999999999999986
No 371
>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.
Probab=94.75 E-value=0.054 Score=46.05 Aligned_cols=42 Identities=17% Similarity=0.200 Sum_probs=31.0
Q ss_pred CcccccchhHHHHHHHHhcCCCCcEEEEEEcCCCCChhHHHHHHhc
Q 047336 159 RNTVGLDDRMEELLDLLIEGPTQLSVVAILDSIGLDKTAFTAEAYN 204 (290)
Q Consensus 159 ~~~vG~e~~~~~L~~~L~~~~~~~~Vi~IvGmgGiGKTTLa~~vy~ 204 (290)
++++|.+..+..|.=....+ .-+-++|.+|+|||+||+.+-.
T Consensus 3 ~dI~GQe~aKrAL~iAAaG~----h~lLl~GppGtGKTmlA~~l~~ 44 (206)
T PF01078_consen 3 SDIVGQEEAKRALEIAAAGG----HHLLLIGPPGTGKTMLARRLPS 44 (206)
T ss_dssp CCSSSTHHHHHHHHHHHHCC------EEEES-CCCTHHHHHHHHHH
T ss_pred hhhcCcHHHHHHHHHHHcCC----CCeEEECCCCCCHHHHHHHHHH
Confidence 46889888888777655543 3567899999999999998865
No 372
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.
Probab=94.75 E-value=0.024 Score=48.97 Aligned_cols=24 Identities=17% Similarity=0.116 Sum_probs=21.5
Q ss_pred cEEEEEEcCCCCChhHHHHHHhcc
Q 047336 182 LSVVAILDSIGLDKTAFTAEAYNS 205 (290)
Q Consensus 182 ~~Vi~IvGmgGiGKTTLa~~vy~d 205 (290)
-.+++|+|..|.|||||++.+..-
T Consensus 12 Ge~~~i~G~nGsGKSTLl~~l~Gl 35 (230)
T TIGR02770 12 GEVLALVGESGSGKSLTCLAILGL 35 (230)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 458999999999999999999873
No 373
>PRK14531 adenylate kinase; Provisional
Probab=94.75 E-value=0.025 Score=47.15 Aligned_cols=22 Identities=18% Similarity=0.134 Sum_probs=19.4
Q ss_pred EEEEEEcCCCCChhHHHHHHhc
Q 047336 183 SVVAILDSIGLDKTAFTAEAYN 204 (290)
Q Consensus 183 ~Vi~IvGmgGiGKTTLa~~vy~ 204 (290)
..|.|+|++|+||||+++.+-+
T Consensus 3 ~~i~i~G~pGsGKsT~~~~la~ 24 (183)
T PRK14531 3 QRLLFLGPPGAGKGTQAARLCA 24 (183)
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 3578999999999999998866
No 374
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=94.74 E-value=0.025 Score=48.12 Aligned_cols=24 Identities=21% Similarity=0.080 Sum_probs=21.5
Q ss_pred cEEEEEEcCCCCChhHHHHHHhcc
Q 047336 182 LSVVAILDSIGLDKTAFTAEAYNS 205 (290)
Q Consensus 182 ~~Vi~IvGmgGiGKTTLa~~vy~d 205 (290)
-.+++|+|..|.|||||++.+...
T Consensus 26 Ge~~~l~G~nGsGKSTLl~~l~G~ 49 (213)
T cd03301 26 GEFVVLLGPSGCGKTTTLRMIAGL 49 (213)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCC
Confidence 458999999999999999999874
No 375
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=94.74 E-value=0.025 Score=48.96 Aligned_cols=23 Identities=9% Similarity=0.141 Sum_probs=20.9
Q ss_pred cEEEEEEcCCCCChhHHHHHHhc
Q 047336 182 LSVVAILDSIGLDKTAFTAEAYN 204 (290)
Q Consensus 182 ~~Vi~IvGmgGiGKTTLa~~vy~ 204 (290)
-.+++|+|..|.|||||++.+..
T Consensus 11 Ge~~~i~G~nGsGKSTLl~~l~G 33 (230)
T TIGR01184 11 GEFISLIGHSGCGKSTLLNLISG 33 (230)
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 35899999999999999999976
No 376
>PF02492 cobW: CobW/HypB/UreG, nucleotide-binding domain; InterPro: IPR003495 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. CobW proteins are generally found proximal to the trimeric cobaltochelatase subunit CobN, which is essential for vitamin B12 (cobalamin) biosynthesis []. They contain a P-loop nucleotide-binding loop in the N-terminal domain and a histidine-rich region in the C-terminal portion suggesting a role in metal binding, possibly as an intermediary between the cobalt transport and chelation systems. CobW might be involved in cobalt reduction leading to cobalt(I) corrinoids. This entry represents CobW-like proteins, including P47K (P31521 from SWISSPROT), a Pseudomonas chlororaphis protein needed for nitrile hydratase expression [], and urease accessory protein UreG, which acts as a chaperone in the activation of urease upon insertion of nickel into the active site [].; PDB: 2WSM_B 1NIJ_A 2HF9_A 2HF8_B.
Probab=94.73 E-value=0.096 Score=43.43 Aligned_cols=22 Identities=23% Similarity=0.318 Sum_probs=19.2
Q ss_pred EEEEEEcCCCCChhHHHHHHhc
Q 047336 183 SVVAILDSIGLDKTAFTAEAYN 204 (290)
Q Consensus 183 ~Vi~IvGmgGiGKTTLa~~vy~ 204 (290)
+|+-|.|+-|.|||||.+++..
T Consensus 1 Pv~ii~GfLGsGKTTli~~ll~ 22 (178)
T PF02492_consen 1 PVIIITGFLGSGKTTLINHLLK 22 (178)
T ss_dssp -EEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHH
Confidence 4778899999999999999884
No 377
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=94.72 E-value=0.024 Score=49.04 Aligned_cols=23 Identities=13% Similarity=0.102 Sum_probs=21.1
Q ss_pred cEEEEEEcCCCCChhHHHHHHhc
Q 047336 182 LSVVAILDSIGLDKTAFTAEAYN 204 (290)
Q Consensus 182 ~~Vi~IvGmgGiGKTTLa~~vy~ 204 (290)
-.+++|+|..|.|||||++.+..
T Consensus 26 Ge~~~l~G~nGsGKSTLl~~l~G 48 (236)
T cd03219 26 GEIHGLIGPNGAGKTTLFNLISG 48 (236)
T ss_pred CcEEEEECCCCCCHHHHHHHHcC
Confidence 46899999999999999999986
No 378
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.71 E-value=0.04 Score=54.58 Aligned_cols=43 Identities=16% Similarity=0.193 Sum_probs=35.1
Q ss_pred CcccccchhHHHHHHHHhcCCCCcEEEEEEcCCCCChhHHHHHH
Q 047336 159 RNTVGLDDRMEELLDLLIEGPTQLSVVAILDSIGLDKTAFTAEA 202 (290)
Q Consensus 159 ~~~vG~e~~~~~L~~~L~~~~~~~~Vi~IvGmgGiGKTTLa~~v 202 (290)
+++||-+.-+..|.+++..+. -...+-++|..|+||||+|+.+
T Consensus 16 ~dviGQe~vv~~L~~~l~~~r-l~ha~Lf~Gp~GvGKTtlAr~l 58 (618)
T PRK14951 16 SEMVGQEHVVQALTNALTQQR-LHHAYLFTGTRGVGKTTVSRIL 58 (618)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHH
Confidence 468999999999999888653 2245578999999999999888
No 379
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.70 E-value=0.037 Score=54.53 Aligned_cols=44 Identities=20% Similarity=0.163 Sum_probs=36.5
Q ss_pred CcccccchhHHHHHHHHhcCCCCcE-EEEEEcCCCCChhHHHHHHhc
Q 047336 159 RNTVGLDDRMEELLDLLIEGPTQLS-VVAILDSIGLDKTAFTAEAYN 204 (290)
Q Consensus 159 ~~~vG~e~~~~~L~~~L~~~~~~~~-Vi~IvGmgGiGKTTLa~~vy~ 204 (290)
.+++|.+.-.+.|.+++..+. +. .+-+.|+.|+||||+|+.+-+
T Consensus 13 ~eivGq~~i~~~L~~~i~~~r--~~ha~Lf~Gp~G~GKTt~A~~lAk 57 (584)
T PRK14952 13 AEVVGQEHVTEPLSSALDAGR--INHAYLFSGPRGCGKTSSARILAR 57 (584)
T ss_pred HHhcCcHHHHHHHHHHHHcCC--CCeEEEEECCCCCCHHHHHHHHHH
Confidence 468999999999999998653 43 457899999999999987765
No 380
>cd04136 Rap_like Rap-like subfamily. The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.
Probab=94.70 E-value=0.026 Score=45.25 Aligned_cols=21 Identities=33% Similarity=0.412 Sum_probs=17.9
Q ss_pred EEEEEcCCCCChhHHHHHHhc
Q 047336 184 VVAILDSIGLDKTAFTAEAYN 204 (290)
Q Consensus 184 Vi~IvGmgGiGKTTLa~~vy~ 204 (290)
.|.|+|.+|+|||||+....+
T Consensus 3 ki~i~G~~~vGKTsl~~~~~~ 23 (163)
T cd04136 3 KVVVLGSGGVGKSALTVQFVQ 23 (163)
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 478999999999999887654
No 381
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=94.70 E-value=0.032 Score=56.69 Aligned_cols=47 Identities=17% Similarity=0.178 Sum_probs=36.3
Q ss_pred CcccccchhHHHHHHHHhc---C--------CCCcEEEEEEcCCCCChhHHHHHHhcc
Q 047336 159 RNTVGLDDRMEELLDLLIE---G--------PTQLSVVAILDSIGLDKTAFTAEAYNS 205 (290)
Q Consensus 159 ~~~vG~e~~~~~L~~~L~~---~--------~~~~~Vi~IvGmgGiGKTTLa~~vy~d 205 (290)
+++.|.+..+++|.+++.. . -....-+-++|++|+||||||+.+.+.
T Consensus 178 ~di~G~~~~~~~l~~~i~~~~~~~~~~~~~gi~~~~giLL~GppGtGKT~laraia~~ 235 (733)
T TIGR01243 178 EDIGGLKEAKEKIREMVELPMKHPELFEHLGIEPPKGVLLYGPPGTGKTLLAKAVANE 235 (733)
T ss_pred HHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCceEEEECCCCCChHHHHHHHHHH
Confidence 4588999999998887642 1 122456779999999999999999883
No 382
>PTZ00035 Rad51 protein; Provisional
Probab=94.69 E-value=0.11 Score=47.67 Aligned_cols=59 Identities=17% Similarity=0.164 Sum_probs=40.2
Q ss_pred HHHHHhcCCCCcEEEEEEcCCCCChhHHHHHHhcccccc---c-cCCeeEEEECCCCCCHHHH
Q 047336 171 LLDLLIEGPTQLSVVAILDSIGLDKTAFTAEAYNSSYVK---H-YFDYLAWIPAPYQYDPDQI 229 (290)
Q Consensus 171 L~~~L~~~~~~~~Vi~IvGmgGiGKTTLa~~vy~d~~v~---~-~F~~~~wV~vs~~~~~~~l 229 (290)
|-++|..+=+.-.++-|+|..|+|||||+..+.-..+.. . .=..++||.-...|+..++
T Consensus 107 LD~lLgGGi~~G~iteI~G~~GsGKT~l~~~l~~~~qlp~~~gg~~g~vvyIdtE~~f~~eri 169 (337)
T PTZ00035 107 LDKLLGGGIETGSITELFGEFRTGKTQLCHTLCVTCQLPIEQGGGEGKVLYIDTEGTFRPERI 169 (337)
T ss_pred HHHHhCCCCCCCeEEEEECCCCCchhHHHHHHHHHhccccccCCCCceEEEEEccCCCCHHHH
Confidence 334444554667899999999999999998876432211 0 1134679988887887764
No 383
>TIGR00455 apsK adenylylsulfate kinase (apsK). Important residue (active site in E.coli) is residue 100 of the seed alignment.
Probab=94.69 E-value=0.032 Score=46.44 Aligned_cols=25 Identities=12% Similarity=0.062 Sum_probs=22.2
Q ss_pred CCcEEEEEEcCCCCChhHHHHHHhc
Q 047336 180 TQLSVVAILDSIGLDKTAFTAEAYN 204 (290)
Q Consensus 180 ~~~~Vi~IvGmgGiGKTTLa~~vy~ 204 (290)
....+|.|.|.+|+||||+|+.+..
T Consensus 16 ~~~~~i~i~G~~GsGKstla~~l~~ 40 (184)
T TIGR00455 16 HRGVVIWLTGLSGSGKSTIANALEK 40 (184)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3457999999999999999999987
No 384
>cd04171 SelB SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo
Probab=94.69 E-value=0.027 Score=45.14 Aligned_cols=21 Identities=14% Similarity=0.188 Sum_probs=19.4
Q ss_pred EEEEEcCCCCChhHHHHHHhc
Q 047336 184 VVAILDSIGLDKTAFTAEAYN 204 (290)
Q Consensus 184 Vi~IvGmgGiGKTTLa~~vy~ 204 (290)
+|+|+|..|+|||||...+.+
T Consensus 2 ~i~i~G~~~~GKssl~~~l~~ 22 (164)
T cd04171 2 IIGTAGHIDHGKTTLIKALTG 22 (164)
T ss_pred EEEEEecCCCCHHHHHHHHhC
Confidence 799999999999999998874
No 385
>PRK09354 recA recombinase A; Provisional
Probab=94.68 E-value=0.073 Score=49.01 Aligned_cols=47 Identities=21% Similarity=0.159 Sum_probs=32.4
Q ss_pred cCCCCcEEEEEEcCCCCChhHHHHHHhccccccccCCeeEEEECCCCCC
Q 047336 177 EGPTQLSVVAILDSIGLDKTAFTAEAYNSSYVKHYFDYLAWIPAPYQYD 225 (290)
Q Consensus 177 ~~~~~~~Vi~IvGmgGiGKTTLa~~vy~d~~v~~~F~~~~wV~vs~~~~ 225 (290)
.+=+.-+++=|.|++|+||||||-++... ....=..++||..-..++
T Consensus 55 GGip~G~IteI~G~~GsGKTtLal~~~~~--~~~~G~~~~yId~E~s~~ 101 (349)
T PRK09354 55 GGLPRGRIVEIYGPESSGKTTLALHAIAE--AQKAGGTAAFIDAEHALD 101 (349)
T ss_pred CCCcCCeEEEEECCCCCCHHHHHHHHHHH--HHHcCCcEEEECCccchH
Confidence 34456788999999999999999887652 223334566766554444
No 386
>PRK08181 transposase; Validated
Probab=94.68 E-value=0.13 Score=45.85 Aligned_cols=34 Identities=9% Similarity=-0.081 Sum_probs=25.2
Q ss_pred EEEEEcCCCCChhHHHHHHhccccccccCCeeEEEE
Q 047336 184 VVAILDSIGLDKTAFTAEAYNSSYVKHYFDYLAWIP 219 (290)
Q Consensus 184 Vi~IvGmgGiGKTTLa~~vy~d~~v~~~F~~~~wV~ 219 (290)
-+-++|++|+|||.||..+-+ .+......+.+++
T Consensus 108 nlll~Gp~GtGKTHLa~Aia~--~a~~~g~~v~f~~ 141 (269)
T PRK08181 108 NLLLFGPPGGGKSHLAAAIGL--ALIENGWRVLFTR 141 (269)
T ss_pred eEEEEecCCCcHHHHHHHHHH--HHHHcCCceeeee
Confidence 478999999999999999987 3333333455555
No 387
>cd01860 Rab5_related Rab5-related subfamily. This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo
Probab=94.67 E-value=0.027 Score=45.20 Aligned_cols=23 Identities=9% Similarity=0.199 Sum_probs=19.7
Q ss_pred EEEEEcCCCCChhHHHHHHhccc
Q 047336 184 VVAILDSIGLDKTAFTAEAYNSS 206 (290)
Q Consensus 184 Vi~IvGmgGiGKTTLa~~vy~d~ 206 (290)
-|.|+|.+|+|||||++.+.++.
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~~ 25 (163)
T cd01860 3 KLVLLGDSSVGKSSLVLRFVKNE 25 (163)
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 36899999999999998887753
No 388
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=94.67 E-value=0.026 Score=48.67 Aligned_cols=23 Identities=22% Similarity=0.133 Sum_probs=21.0
Q ss_pred cEEEEEEcCCCCChhHHHHHHhc
Q 047336 182 LSVVAILDSIGLDKTAFTAEAYN 204 (290)
Q Consensus 182 ~~Vi~IvGmgGiGKTTLa~~vy~ 204 (290)
-.+++|+|..|.|||||.+.+..
T Consensus 26 Ge~~~l~G~nGsGKSTLl~~l~G 48 (232)
T cd03218 26 GEIVGLLGPNGAGKTTTFYMIVG 48 (232)
T ss_pred CcEEEEECCCCCCHHHHHHHHhC
Confidence 45899999999999999999976
No 389
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=94.66 E-value=0.14 Score=51.76 Aligned_cols=23 Identities=30% Similarity=0.336 Sum_probs=20.2
Q ss_pred cEEEEEEcCCCCChhHHHHHHhc
Q 047336 182 LSVVAILDSIGLDKTAFTAEAYN 204 (290)
Q Consensus 182 ~~Vi~IvGmgGiGKTTLa~~vy~ 204 (290)
-.||+++|+.|+||||.+.++..
T Consensus 185 g~Vi~lVGpnGvGKTTTiaKLA~ 207 (767)
T PRK14723 185 GGVLALVGPTGVGKTTTTAKLAA 207 (767)
T ss_pred CeEEEEECCCCCcHHHHHHHHHh
Confidence 47999999999999998877766
No 390
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=94.66 E-value=0.026 Score=49.08 Aligned_cols=24 Identities=13% Similarity=0.072 Sum_probs=21.6
Q ss_pred cEEEEEEcCCCCChhHHHHHHhcc
Q 047336 182 LSVVAILDSIGLDKTAFTAEAYNS 205 (290)
Q Consensus 182 ~~Vi~IvGmgGiGKTTLa~~vy~d 205 (290)
-.+++|+|..|.|||||++.+..-
T Consensus 28 Ge~~~i~G~nGsGKSTLl~~l~G~ 51 (242)
T PRK11124 28 GETLVLLGPSGAGKSSLLRVLNLL 51 (242)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 468999999999999999999863
No 391
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=94.66 E-value=0.038 Score=53.48 Aligned_cols=47 Identities=21% Similarity=0.378 Sum_probs=34.4
Q ss_pred CcccccchhHHHHHHHHh---c-------CCCCcEEEEEEcCCCCChhHHHHHHhcc
Q 047336 159 RNTVGLDDRMEELLDLLI---E-------GPTQLSVVAILDSIGLDKTAFTAEAYNS 205 (290)
Q Consensus 159 ~~~vG~e~~~~~L~~~L~---~-------~~~~~~Vi~IvGmgGiGKTTLa~~vy~d 205 (290)
.+++|.++.++++.+++. . +....+-+-++|++|+|||+||+.+.+.
T Consensus 55 ~di~g~~~~k~~l~~~~~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~ 111 (495)
T TIGR01241 55 KDVAGIDEAKEELMEIVDFLKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLAKAVAGE 111 (495)
T ss_pred HHhCCHHHHHHHHHHHHHHHHCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHH
Confidence 468898888777766543 1 1122344678999999999999999874
No 392
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=94.66 E-value=0.047 Score=51.30 Aligned_cols=46 Identities=11% Similarity=0.037 Sum_probs=36.0
Q ss_pred CcccccchhHHHHHHHHhcCCC--------CcEEEEEEcCCCCChhHHHHHHhc
Q 047336 159 RNTVGLDDRMEELLDLLIEGPT--------QLSVVAILDSIGLDKTAFTAEAYN 204 (290)
Q Consensus 159 ~~~vG~e~~~~~L~~~L~~~~~--------~~~Vi~IvGmgGiGKTTLa~~vy~ 204 (290)
++++|.+..++.|.+++..+.. -..-+-++|+.|+||||+|+.+-.
T Consensus 5 ~~IiGq~~~~~~L~~~i~~~~~~~~~~~~~l~ha~Lf~Gp~G~GKt~lA~~lA~ 58 (394)
T PRK07940 5 DDLVGQEAVVAELRAAARAARADVAAAGSGMTHAWLFTGPPGSGRSVAARAFAA 58 (394)
T ss_pred hhccChHHHHHHHHHHHHhccccccccCCCCCeEEEEECCCCCcHHHHHHHHHH
Confidence 3589999999999999986421 234567899999999999987643
No 393
>smart00072 GuKc Guanylate kinase homologues. Active enzymes catalyze ATP-dependent phosphorylation of GMP to GDP. Structure resembles that of adenylate kinase. So-called membrane-associated guanylate kinase homologues (MAGUKs) do not possess guanylate kinase activities; instead at least some possess protein-binding functions.
Probab=94.65 E-value=0.035 Score=46.29 Aligned_cols=24 Identities=17% Similarity=0.214 Sum_probs=21.4
Q ss_pred cEEEEEEcCCCCChhHHHHHHhcc
Q 047336 182 LSVVAILDSIGLDKTAFTAEAYNS 205 (290)
Q Consensus 182 ~~Vi~IvGmgGiGKTTLa~~vy~d 205 (290)
.+.|.|+|+.|+|||||++.+...
T Consensus 2 ~r~ivl~Gpsg~GK~tl~~~L~~~ 25 (184)
T smart00072 2 RRPIVLSGPSGVGKGTLLAELIQE 25 (184)
T ss_pred CcEEEEECCCCCCHHHHHHHHHhc
Confidence 457889999999999999999874
No 394
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=94.65 E-value=0.041 Score=48.50 Aligned_cols=24 Identities=8% Similarity=0.148 Sum_probs=21.9
Q ss_pred CcEEEEEEcCCCCChhHHHHHHhc
Q 047336 181 QLSVVAILDSIGLDKTAFTAEAYN 204 (290)
Q Consensus 181 ~~~Vi~IvGmgGiGKTTLa~~vy~ 204 (290)
+-.++++||-.|+|||||++.+..
T Consensus 38 ~ge~~glVGESG~GKSTlgr~i~~ 61 (268)
T COG4608 38 EGETLGLVGESGCGKSTLGRLILG 61 (268)
T ss_pred CCCEEEEEecCCCCHHHHHHHHHc
Confidence 456899999999999999999987
No 395
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=94.65 E-value=0.026 Score=49.02 Aligned_cols=24 Identities=17% Similarity=0.195 Sum_probs=21.5
Q ss_pred cEEEEEEcCCCCChhHHHHHHhcc
Q 047336 182 LSVVAILDSIGLDKTAFTAEAYNS 205 (290)
Q Consensus 182 ~~Vi~IvGmgGiGKTTLa~~vy~d 205 (290)
=.+++|+|..|.|||||.+.+..-
T Consensus 26 Ge~~~i~G~nGsGKSTLl~~l~Gl 49 (243)
T TIGR01978 26 GEIHAIMGPNGSGKSTLSKTIAGH 49 (243)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 458999999999999999999774
No 396
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=94.63 E-value=0.025 Score=45.67 Aligned_cols=20 Identities=30% Similarity=0.245 Sum_probs=17.6
Q ss_pred EEEEcCCCCChhHHHHHHhc
Q 047336 185 VAILDSIGLDKTAFTAEAYN 204 (290)
Q Consensus 185 i~IvGmgGiGKTTLa~~vy~ 204 (290)
|.|+|..|+|||||...+..
T Consensus 2 i~~vG~~~~GKstLi~~l~~ 21 (167)
T cd04160 2 VLILGLDNAGKTTFLEQLKT 21 (167)
T ss_pred EEEEecCCCCHHHHHHHHhh
Confidence 67999999999999998753
No 397
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=94.63 E-value=0.33 Score=45.65 Aligned_cols=70 Identities=21% Similarity=0.210 Sum_probs=46.7
Q ss_pred hHHHHHHHHhcC-------CCCcEEEEEEcCCCCChhHHHHHHhccccccccCCeeEEEECCCCCCHH--HHHHHHHHHh
Q 047336 167 RMEELLDLLIEG-------PTQLSVVAILDSIGLDKTAFTAEAYNSSYVKHYFDYLAWIPAPYQYDPD--QILDTVTWLS 237 (290)
Q Consensus 167 ~~~~L~~~L~~~-------~~~~~Vi~IvGmgGiGKTTLa~~vy~d~~v~~~F~~~~wV~vs~~~~~~--~ll~~Il~~l 237 (290)
-.++|++.|..+ .....||-.||.-|.||||-+-++-+ ..++ ....+-+.-...|.+. +=|+.+.+|+
T Consensus 78 V~eELv~llG~~~~~~~l~~~~P~vImmvGLQGsGKTTt~~KLA~--~lkk-~~~kvllVaaD~~RpAA~eQL~~La~q~ 154 (451)
T COG0541 78 VYEELVKLLGGENSELNLAKKPPTVILMVGLQGSGKTTTAGKLAK--YLKK-KGKKVLLVAADTYRPAAIEQLKQLAEQV 154 (451)
T ss_pred HHHHHHHHhCCCCcccccCCCCCeEEEEEeccCCChHhHHHHHHH--HHHH-cCCceEEEecccCChHHHHHHHHHHHHc
Confidence 456777777632 13478999999999999998877666 3344 4555555555555554 4466777776
Q ss_pred hh
Q 047336 238 RR 239 (290)
Q Consensus 238 ~~ 239 (290)
.-
T Consensus 155 ~v 156 (451)
T COG0541 155 GV 156 (451)
T ss_pred CC
Confidence 53
No 398
>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans. NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.
Probab=94.62 E-value=0.028 Score=45.43 Aligned_cols=23 Identities=9% Similarity=0.147 Sum_probs=20.4
Q ss_pred EEEEEEcCCCCChhHHHHHHhcc
Q 047336 183 SVVAILDSIGLDKTAFTAEAYNS 205 (290)
Q Consensus 183 ~Vi~IvGmgGiGKTTLa~~vy~d 205 (290)
+.|.|+|..|+|||||+..+.+.
T Consensus 1 ~~i~~~G~~~~GKssli~~l~~~ 23 (168)
T cd01897 1 PTLVIAGYPNVGKSSLVNKLTRA 23 (168)
T ss_pred CeEEEEcCCCCCHHHHHHHHhcC
Confidence 36889999999999999998874
No 399
>PRK07429 phosphoribulokinase; Provisional
Probab=94.62 E-value=0.03 Score=51.21 Aligned_cols=25 Identities=16% Similarity=0.236 Sum_probs=22.8
Q ss_pred CCcEEEEEEcCCCCChhHHHHHHhc
Q 047336 180 TQLSVVAILDSIGLDKTAFTAEAYN 204 (290)
Q Consensus 180 ~~~~Vi~IvGmgGiGKTTLa~~vy~ 204 (290)
.+.-+|+|.|..|+|||||++.+..
T Consensus 6 ~~~~IIgI~G~SGSGKSTla~~L~~ 30 (327)
T PRK07429 6 DRPVLLGVAGDSGCGKTTFLRGLAD 30 (327)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHh
Confidence 4578999999999999999999986
No 400
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=94.62 E-value=0.028 Score=47.45 Aligned_cols=25 Identities=16% Similarity=0.048 Sum_probs=21.9
Q ss_pred CcEEEEEEcCCCCChhHHHHHHhcc
Q 047336 181 QLSVVAILDSIGLDKTAFTAEAYNS 205 (290)
Q Consensus 181 ~~~Vi~IvGmgGiGKTTLa~~vy~d 205 (290)
.-.+++|+|..|.|||||++.+...
T Consensus 26 ~Ge~~~l~G~nGsGKSTLl~~i~G~ 50 (200)
T PRK13540 26 AGGLLHLKGSNGAGKTTLLKLIAGL 50 (200)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 3568999999999999999999773
No 401
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=94.62 E-value=0.028 Score=47.32 Aligned_cols=25 Identities=12% Similarity=0.068 Sum_probs=22.0
Q ss_pred CcEEEEEEcCCCCChhHHHHHHhcc
Q 047336 181 QLSVVAILDSIGLDKTAFTAEAYNS 205 (290)
Q Consensus 181 ~~~Vi~IvGmgGiGKTTLa~~vy~d 205 (290)
.-.+++|+|..|.|||||.+.+...
T Consensus 25 ~Ge~~~i~G~nGsGKSTLl~~l~G~ 49 (198)
T TIGR01189 25 AGEALQVTGPNGIGKTTLLRILAGL 49 (198)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCC
Confidence 3568999999999999999999774
No 402
>TIGR00017 cmk cytidylate kinase. This family consists of cytidylate kinase, which catalyzes the phosphorylation of cytidine 5-monophosphate (dCMP) to cytidine 5 -diphosphate (dCDP) in the presence of ATP or GTP. UMP and dCMP can also act as acceptors.
Probab=94.61 E-value=0.029 Score=48.26 Aligned_cols=22 Identities=18% Similarity=0.241 Sum_probs=20.5
Q ss_pred EEEEEEcCCCCChhHHHHHHhc
Q 047336 183 SVVAILDSIGLDKTAFTAEAYN 204 (290)
Q Consensus 183 ~Vi~IvGmgGiGKTTLa~~vy~ 204 (290)
.+|+|.|+.|+||||+++.+..
T Consensus 3 ~~i~i~G~~GsGKst~~~~la~ 24 (217)
T TIGR00017 3 MIIAIDGPSGAGKSTVAKAVAE 24 (217)
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999999986
No 403
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.61 E-value=0.028 Score=47.14 Aligned_cols=23 Identities=17% Similarity=0.186 Sum_probs=21.2
Q ss_pred cEEEEEEcCCCCChhHHHHHHhc
Q 047336 182 LSVVAILDSIGLDKTAFTAEAYN 204 (290)
Q Consensus 182 ~~Vi~IvGmgGiGKTTLa~~vy~ 204 (290)
-.+++|+|..|.|||||++.+..
T Consensus 33 Ge~~~l~G~nGsGKSTLl~~l~G 55 (192)
T cd03232 33 GTLTALMGESGAGKTTLLDVLAG 55 (192)
T ss_pred CcEEEEECCCCCCHHHHHHHHhC
Confidence 46899999999999999999985
No 404
>TIGR00101 ureG urease accessory protein UreG. This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.
Probab=94.61 E-value=0.03 Score=47.46 Aligned_cols=22 Identities=18% Similarity=0.253 Sum_probs=20.2
Q ss_pred EEEEEEcCCCCChhHHHHHHhc
Q 047336 183 SVVAILDSIGLDKTAFTAEAYN 204 (290)
Q Consensus 183 ~Vi~IvGmgGiGKTTLa~~vy~ 204 (290)
..|+|.|+.|.|||||.+.+.+
T Consensus 2 ~~i~i~G~~GsGKTTll~~l~~ 23 (199)
T TIGR00101 2 LKIGVAGPVGSGKTALIEALTR 23 (199)
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 3689999999999999999997
No 405
>PRK10908 cell division protein FtsE; Provisional
Probab=94.60 E-value=0.028 Score=48.20 Aligned_cols=24 Identities=8% Similarity=0.008 Sum_probs=21.5
Q ss_pred cEEEEEEcCCCCChhHHHHHHhcc
Q 047336 182 LSVVAILDSIGLDKTAFTAEAYNS 205 (290)
Q Consensus 182 ~~Vi~IvGmgGiGKTTLa~~vy~d 205 (290)
=.+++|+|..|.|||||++.+..-
T Consensus 28 Ge~~~i~G~nGsGKSTLl~~l~G~ 51 (222)
T PRK10908 28 GEMAFLTGHSGAGKSTLLKLICGI 51 (222)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 468999999999999999999763
No 406
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.60 E-value=0.028 Score=48.93 Aligned_cols=23 Identities=13% Similarity=0.088 Sum_probs=21.0
Q ss_pred cEEEEEEcCCCCChhHHHHHHhc
Q 047336 182 LSVVAILDSIGLDKTAFTAEAYN 204 (290)
Q Consensus 182 ~~Vi~IvGmgGiGKTTLa~~vy~ 204 (290)
-.+++|+|..|.|||||++.+..
T Consensus 27 Ge~~~i~G~nGsGKSTLl~~l~G 49 (242)
T cd03295 27 GEFLVLIGPSGSGKTTTMKMINR 49 (242)
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 45899999999999999999976
No 407
>PHA02530 pseT polynucleotide kinase; Provisional
Probab=94.59 E-value=0.028 Score=50.46 Aligned_cols=22 Identities=14% Similarity=0.231 Sum_probs=19.7
Q ss_pred EEEEEEcCCCCChhHHHHHHhc
Q 047336 183 SVVAILDSIGLDKTAFTAEAYN 204 (290)
Q Consensus 183 ~Vi~IvGmgGiGKTTLa~~vy~ 204 (290)
.+|-++|.+|+||||+|+.+-+
T Consensus 3 ~liil~G~pGSGKSTla~~L~~ 24 (300)
T PHA02530 3 KIILTVGVPGSGKSTWAREFAA 24 (300)
T ss_pred EEEEEEcCCCCCHHHHHHHHHH
Confidence 5778899999999999999876
No 408
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=94.59 E-value=0.042 Score=53.20 Aligned_cols=45 Identities=11% Similarity=0.010 Sum_probs=36.3
Q ss_pred CcccccchhHHHHHHHHhcCCCCcEEEEEEcCCCCChhHHHHHHhc
Q 047336 159 RNTVGLDDRMEELLDLLIEGPTQLSVVAILDSIGLDKTAFTAEAYN 204 (290)
Q Consensus 159 ~~~vG~e~~~~~L~~~L~~~~~~~~Vi~IvGmgGiGKTTLa~~vy~ 204 (290)
.+++|.+.-...|.+.+..+. -..-+-++|+.|+||||+|+.+.+
T Consensus 21 ~dliGq~~vv~~L~~ai~~~r-i~~a~Lf~Gp~G~GKTT~ArilAk 65 (507)
T PRK06645 21 AELQGQEVLVKVLSYTILNDR-LAGGYLLTGIRGVGKTTSARIIAK 65 (507)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-CCceEEEECCCCCCHHHHHHHHHH
Confidence 468999999999888776543 234566899999999999999876
No 409
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=94.59 E-value=0.029 Score=47.60 Aligned_cols=23 Identities=17% Similarity=0.096 Sum_probs=21.1
Q ss_pred cEEEEEEcCCCCChhHHHHHHhc
Q 047336 182 LSVVAILDSIGLDKTAFTAEAYN 204 (290)
Q Consensus 182 ~~Vi~IvGmgGiGKTTLa~~vy~ 204 (290)
-.+++|+|..|.|||||.+.+..
T Consensus 26 G~~~~i~G~nGsGKSTLl~~l~G 48 (208)
T cd03268 26 GEIYGFLGPNGAGKTTTMKIILG 48 (208)
T ss_pred CcEEEEECCCCCCHHHHHHHHhC
Confidence 46899999999999999999976
No 410
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein. This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.
Probab=94.58 E-value=0.027 Score=49.14 Aligned_cols=23 Identities=17% Similarity=0.231 Sum_probs=20.8
Q ss_pred cEEEEEEcCCCCChhHHHHHHhc
Q 047336 182 LSVVAILDSIGLDKTAFTAEAYN 204 (290)
Q Consensus 182 ~~Vi~IvGmgGiGKTTLa~~vy~ 204 (290)
=.+++|+|..|.|||||++.+..
T Consensus 27 Ge~~~i~G~nGsGKSTLl~~l~G 49 (247)
T TIGR00972 27 NQVTALIGPSGCGKSTLLRSLNR 49 (247)
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 46899999999999999999864
No 411
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=94.58 E-value=0.029 Score=47.67 Aligned_cols=25 Identities=12% Similarity=0.007 Sum_probs=22.0
Q ss_pred CcEEEEEEcCCCCChhHHHHHHhcc
Q 047336 181 QLSVVAILDSIGLDKTAFTAEAYNS 205 (290)
Q Consensus 181 ~~~Vi~IvGmgGiGKTTLa~~vy~d 205 (290)
+-.+++|+|..|.|||||++.+..-
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~l~G~ 51 (207)
T PRK13539 27 AGEALVLTGPNGSGKTTLLRLIAGL 51 (207)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3568999999999999999999873
No 412
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL. Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.
Probab=94.58 E-value=0.029 Score=48.19 Aligned_cols=24 Identities=21% Similarity=0.272 Sum_probs=21.5
Q ss_pred cEEEEEEcCCCCChhHHHHHHhcc
Q 047336 182 LSVVAILDSIGLDKTAFTAEAYNS 205 (290)
Q Consensus 182 ~~Vi~IvGmgGiGKTTLa~~vy~d 205 (290)
=.+++|+|..|.|||||++.+..-
T Consensus 34 Ge~~~l~G~nGsGKSTLl~~i~G~ 57 (224)
T TIGR02324 34 GECVALSGPSGAGKSTLLKSLYAN 57 (224)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 468999999999999999999863
No 413
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=94.56 E-value=0.029 Score=47.92 Aligned_cols=23 Identities=22% Similarity=0.102 Sum_probs=21.0
Q ss_pred cEEEEEEcCCCCChhHHHHHHhc
Q 047336 182 LSVVAILDSIGLDKTAFTAEAYN 204 (290)
Q Consensus 182 ~~Vi~IvGmgGiGKTTLa~~vy~ 204 (290)
-.+++|+|..|.|||||.+.+..
T Consensus 31 Ge~~~i~G~nGsGKSTLl~~l~G 53 (218)
T cd03266 31 GEVTGLLGPNGAGKTTTLRMLAG 53 (218)
T ss_pred CcEEEEECCCCCCHHHHHHHHhC
Confidence 46899999999999999999986
No 414
>cd04177 RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu
Probab=94.56 E-value=0.029 Score=45.60 Aligned_cols=21 Identities=24% Similarity=0.431 Sum_probs=18.4
Q ss_pred EEEEcCCCCChhHHHHHHhcc
Q 047336 185 VAILDSIGLDKTAFTAEAYNS 205 (290)
Q Consensus 185 i~IvGmgGiGKTTLa~~vy~d 205 (290)
|.++|.+|+|||||.+...++
T Consensus 4 i~liG~~~~GKTsli~~~~~~ 24 (168)
T cd04177 4 IVVLGAGGVGKSALTVQFVQN 24 (168)
T ss_pred EEEECCCCCCHHHHHHHHHhC
Confidence 789999999999999887653
No 415
>cd04101 RabL4 RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.
Probab=94.56 E-value=0.029 Score=45.11 Aligned_cols=21 Identities=24% Similarity=0.240 Sum_probs=18.2
Q ss_pred EEEEEcCCCCChhHHHHHHhc
Q 047336 184 VVAILDSIGLDKTAFTAEAYN 204 (290)
Q Consensus 184 Vi~IvGmgGiGKTTLa~~vy~ 204 (290)
-|.|+|.+|+|||||+..+.+
T Consensus 2 ki~vvG~~~~GKtsl~~~l~~ 22 (164)
T cd04101 2 RCAVVGDPAVGKTAFVQMFHS 22 (164)
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 368999999999999988754
No 416
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=94.56 E-value=0.029 Score=47.70 Aligned_cols=23 Identities=22% Similarity=0.147 Sum_probs=21.0
Q ss_pred cEEEEEEcCCCCChhHHHHHHhc
Q 047336 182 LSVVAILDSIGLDKTAFTAEAYN 204 (290)
Q Consensus 182 ~~Vi~IvGmgGiGKTTLa~~vy~ 204 (290)
-.+++|+|..|.|||||.+.+..
T Consensus 26 G~~~~l~G~nGsGKSTLl~~l~G 48 (213)
T cd03262 26 GEVVVIIGPSGSGKSTLLRCINL 48 (213)
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 45899999999999999999986
No 417
>cd04140 ARHI_like ARHI subfamily. ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to
Probab=94.55 E-value=0.03 Score=45.41 Aligned_cols=22 Identities=14% Similarity=0.253 Sum_probs=18.7
Q ss_pred EEEEEcCCCCChhHHHHHHhcc
Q 047336 184 VVAILDSIGLDKTAFTAEAYNS 205 (290)
Q Consensus 184 Vi~IvGmgGiGKTTLa~~vy~d 205 (290)
.|.++|.+|+|||||.+.+.+.
T Consensus 3 kv~~vG~~~vGKTsli~~~~~~ 24 (165)
T cd04140 3 RVVVFGAGGVGKSSLVLRFVKG 24 (165)
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 3679999999999999877653
No 418
>PLN02165 adenylate isopentenyltransferase
Probab=94.55 E-value=0.03 Score=51.12 Aligned_cols=26 Identities=19% Similarity=0.300 Sum_probs=22.0
Q ss_pred CCcEEEEEEcCCCCChhHHHHHHhcc
Q 047336 180 TQLSVVAILDSIGLDKTAFTAEAYNS 205 (290)
Q Consensus 180 ~~~~Vi~IvGmgGiGKTTLa~~vy~d 205 (290)
..-.+|+|+|+.|+||||||..+...
T Consensus 41 ~~g~iivIiGPTGSGKStLA~~LA~~ 66 (334)
T PLN02165 41 CKDKVVVIMGATGSGKSRLSVDLATR 66 (334)
T ss_pred CCCCEEEEECCCCCcHHHHHHHHHHH
Confidence 34559999999999999999988763
No 419
>COG0125 Tmk Thymidylate kinase [Nucleotide transport and metabolism]
Probab=94.55 E-value=0.085 Score=45.08 Aligned_cols=52 Identities=10% Similarity=-0.090 Sum_probs=36.6
Q ss_pred cEEEEEEcCCCCChhHHHHHHhccccccccCCeeEEEECCCCCCHHHHHHHHHH
Q 047336 182 LSVVAILDSIGLDKTAFTAEAYNSSYVKHYFDYLAWIPAPYQYDPDQILDTVTW 235 (290)
Q Consensus 182 ~~Vi~IvGmgGiGKTTLa~~vy~d~~v~~~F~~~~wV~vs~~~~~~~ll~~Il~ 235 (290)
-..|+|=|.-|+||||+++.++. ..+.+.-.++|..=+..-.+.+..+.++.
T Consensus 3 g~fI~iEGiDGaGKTT~~~~L~~--~l~~~g~~v~~trEP~~~~ige~iR~~ll 54 (208)
T COG0125 3 GMFIVIEGIDGAGKTTQAELLKE--RLEERGIKVVLTREPGGTPIGEKIRELLL 54 (208)
T ss_pred ceEEEEECCCCCCHHHHHHHHHH--HHHHcCCeEEEEeCCCCChHHHHHHHHHc
Confidence 35789999999999999999999 55554445666655555444555555553
No 420
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=94.55 E-value=0.031 Score=44.73 Aligned_cols=24 Identities=8% Similarity=0.076 Sum_probs=21.5
Q ss_pred cEEEEEEcCCCCChhHHHHHHhcc
Q 047336 182 LSVVAILDSIGLDKTAFTAEAYNS 205 (290)
Q Consensus 182 ~~Vi~IvGmgGiGKTTLa~~vy~d 205 (290)
-.+++|+|..|.|||||++.+..-
T Consensus 26 Ge~~~i~G~nGsGKStLl~~l~G~ 49 (144)
T cd03221 26 GDRIGLVGRNGAGKSTLLKLIAGE 49 (144)
T ss_pred CCEEEEECCCCCCHHHHHHHHcCC
Confidence 468999999999999999999873
No 421
>PRK13973 thymidylate kinase; Provisional
Probab=94.54 E-value=0.094 Score=44.83 Aligned_cols=23 Identities=9% Similarity=0.019 Sum_probs=20.9
Q ss_pred EEEEEEcCCCCChhHHHHHHhcc
Q 047336 183 SVVAILDSIGLDKTAFTAEAYNS 205 (290)
Q Consensus 183 ~Vi~IvGmgGiGKTTLa~~vy~d 205 (290)
..|.|-|..|+||||+++.+++.
T Consensus 4 ~~IviEG~dGsGKtTq~~~l~~~ 26 (213)
T PRK13973 4 RFITFEGGEGAGKSTQIRLLAER 26 (213)
T ss_pred eEEEEEcCCCCCHHHHHHHHHHH
Confidence 57889999999999999999984
No 422
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=94.53 E-value=0.27 Score=43.21 Aligned_cols=73 Identities=15% Similarity=0.045 Sum_probs=43.2
Q ss_pred CcEEEEEEcCCCCChhHHHHHHhccccccccCCeeEEEEC--CCCCCHHHHHHHH---HHHhhhcCCCchhhHHHHhHHH
Q 047336 181 QLSVVAILDSIGLDKTAFTAEAYNSSYVKHYFDYLAWIPA--PYQYDPDQILDTV---TWLSRRNLSFSRSWIQKENIAA 255 (290)
Q Consensus 181 ~~~Vi~IvGmgGiGKTTLa~~vy~d~~v~~~F~~~~wV~v--s~~~~~~~ll~~I---l~~l~~~~~~~~~~~~~~~~~~ 255 (290)
+-..+.++|+.|+||||+.+.|+. .+. +=.-.+.+.- -.+.+..++-++| ++++.--.. ++-.+||+-
T Consensus 26 ~gef~vliGpSGsGKTTtLkMINr--Lie-pt~G~I~i~g~~i~~~d~~~LRr~IGYviQqigLFPh----~Tv~eNIa~ 98 (309)
T COG1125 26 EGEFLVLIGPSGSGKTTTLKMINR--LIE-PTSGEILIDGEDISDLDPVELRRKIGYVIQQIGLFPH----LTVAENIAT 98 (309)
T ss_pred CCeEEEEECCCCCcHHHHHHHHhc--ccC-CCCceEEECCeecccCCHHHHHHhhhhhhhhcccCCC----ccHHHHHHh
Confidence 356788999999999999999986 332 2233344432 1345666666665 444433222 344566655
Q ss_pred Hhhhc
Q 047336 256 LWKIS 260 (290)
Q Consensus 256 ~~~~~ 260 (290)
+-++.
T Consensus 99 VP~L~ 103 (309)
T COG1125 99 VPKLL 103 (309)
T ss_pred hhhhc
Confidence 44443
No 423
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=94.53 E-value=0.029 Score=49.11 Aligned_cols=23 Identities=22% Similarity=0.257 Sum_probs=20.8
Q ss_pred cEEEEEEcCCCCChhHHHHHHhc
Q 047336 182 LSVVAILDSIGLDKTAFTAEAYN 204 (290)
Q Consensus 182 ~~Vi~IvGmgGiGKTTLa~~vy~ 204 (290)
-.+++|+|..|.|||||.+.+..
T Consensus 32 Ge~~~i~G~nGsGKSTLl~~l~G 54 (253)
T PRK14242 32 NQVTALIGPSGCGKSTFLRCLNR 54 (253)
T ss_pred CCEEEEECCCCCCHHHHHHHHHh
Confidence 46899999999999999999974
No 424
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=94.53 E-value=0.031 Score=46.03 Aligned_cols=23 Identities=17% Similarity=0.193 Sum_probs=21.0
Q ss_pred cEEEEEEcCCCCChhHHHHHHhc
Q 047336 182 LSVVAILDSIGLDKTAFTAEAYN 204 (290)
Q Consensus 182 ~~Vi~IvGmgGiGKTTLa~~vy~ 204 (290)
-.+++|+|..|.|||||.+.+..
T Consensus 28 Ge~~~i~G~nGsGKStLl~~l~G 50 (173)
T cd03246 28 GESLAIIGPSGSGKSTLARLILG 50 (173)
T ss_pred CCEEEEECCCCCCHHHHHHHHHh
Confidence 45899999999999999999986
No 425
>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t
Probab=94.52 E-value=0.031 Score=45.17 Aligned_cols=23 Identities=9% Similarity=0.180 Sum_probs=19.5
Q ss_pred EEEEEEcCCCCChhHHHHHHhcc
Q 047336 183 SVVAILDSIGLDKTAFTAEAYNS 205 (290)
Q Consensus 183 ~Vi~IvGmgGiGKTTLa~~vy~d 205 (290)
.-|.|+|.+|+|||||...+.+.
T Consensus 3 ~ki~i~G~~~vGKSsli~~~~~~ 25 (166)
T cd01869 3 FKLLLIGDSGVGKSCLLLRFADD 25 (166)
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 35789999999999999988763
No 426
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=94.52 E-value=0.03 Score=49.47 Aligned_cols=23 Identities=17% Similarity=0.140 Sum_probs=21.1
Q ss_pred cEEEEEEcCCCCChhHHHHHHhc
Q 047336 182 LSVVAILDSIGLDKTAFTAEAYN 204 (290)
Q Consensus 182 ~~Vi~IvGmgGiGKTTLa~~vy~ 204 (290)
-.+++|+|..|.|||||.+.+..
T Consensus 38 Ge~~~I~G~NGsGKSTLlk~l~G 60 (257)
T PRK11247 38 GQFVAVVGRSGCGKSTLLRLLAG 60 (257)
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 45899999999999999999976
No 427
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=94.52 E-value=0.029 Score=49.06 Aligned_cols=23 Identities=13% Similarity=0.190 Sum_probs=21.0
Q ss_pred cEEEEEEcCCCCChhHHHHHHhc
Q 047336 182 LSVVAILDSIGLDKTAFTAEAYN 204 (290)
Q Consensus 182 ~~Vi~IvGmgGiGKTTLa~~vy~ 204 (290)
-.+++|+|..|.|||||++.+..
T Consensus 29 Ge~~~i~G~nGsGKSTLl~~i~G 51 (250)
T PRK14247 29 NTITALMGPSGSGKSTLLRVFNR 51 (250)
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 46899999999999999999976
No 428
>PRK14241 phosphate transporter ATP-binding protein; Provisional
Probab=94.52 E-value=0.029 Score=49.37 Aligned_cols=23 Identities=22% Similarity=0.213 Sum_probs=21.1
Q ss_pred cEEEEEEcCCCCChhHHHHHHhc
Q 047336 182 LSVVAILDSIGLDKTAFTAEAYN 204 (290)
Q Consensus 182 ~~Vi~IvGmgGiGKTTLa~~vy~ 204 (290)
-.+++|+|..|.|||||.+.+..
T Consensus 30 Ge~~~i~G~nGsGKSTLl~~laG 52 (258)
T PRK14241 30 RSVTAFIGPSGCGKSTVLRTLNR 52 (258)
T ss_pred CcEEEEECCCCCCHHHHHHHHhc
Confidence 46899999999999999999985
No 429
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=94.51 E-value=0.029 Score=49.18 Aligned_cols=23 Identities=13% Similarity=0.224 Sum_probs=21.4
Q ss_pred cEEEEEEcCCCCChhHHHHHHhc
Q 047336 182 LSVVAILDSIGLDKTAFTAEAYN 204 (290)
Q Consensus 182 ~~Vi~IvGmgGiGKTTLa~~vy~ 204 (290)
-.+++|+|+.|.|||||.|.+..
T Consensus 30 G~~~~iiGPNGaGKSTLlK~iLG 52 (254)
T COG1121 30 GEITALIGPNGAGKSTLLKAILG 52 (254)
T ss_pred CcEEEEECCCCCCHHHHHHHHhC
Confidence 37899999999999999999987
No 430
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.51 E-value=0.029 Score=47.49 Aligned_cols=24 Identities=17% Similarity=0.119 Sum_probs=21.5
Q ss_pred cEEEEEEcCCCCChhHHHHHHhcc
Q 047336 182 LSVVAILDSIGLDKTAFTAEAYNS 205 (290)
Q Consensus 182 ~~Vi~IvGmgGiGKTTLa~~vy~d 205 (290)
=.+++|+|..|.|||||++.+..-
T Consensus 33 Ge~~~i~G~nGsGKSTLl~~l~G~ 56 (202)
T cd03233 33 GEMVLVLGRPGSGCSTLLKALANR 56 (202)
T ss_pred CcEEEEECCCCCCHHHHHHHhccc
Confidence 469999999999999999998763
No 431
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=94.51 E-value=0.031 Score=46.34 Aligned_cols=23 Identities=22% Similarity=0.241 Sum_probs=21.3
Q ss_pred cEEEEEEcCCCCChhHHHHHHhc
Q 047336 182 LSVVAILDSIGLDKTAFTAEAYN 204 (290)
Q Consensus 182 ~~Vi~IvGmgGiGKTTLa~~vy~ 204 (290)
-.+++|+|..|.|||||++.+..
T Consensus 25 G~~~~l~G~nGsGKStLl~~i~G 47 (180)
T cd03214 25 GEIVGILGPNGAGKSTLLKTLAG 47 (180)
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 45899999999999999999987
No 432
>PF13245 AAA_19: Part of AAA domain
Probab=94.51 E-value=0.033 Score=39.54 Aligned_cols=23 Identities=17% Similarity=0.215 Sum_probs=17.0
Q ss_pred cEEEEEEcCCCCChh-HHHHHHhc
Q 047336 182 LSVVAILDSIGLDKT-AFTAEAYN 204 (290)
Q Consensus 182 ~~Vi~IvGmgGiGKT-TLa~~vy~ 204 (290)
-++..|.|.+|.||| |+++.+..
T Consensus 10 ~~~~vv~g~pGtGKT~~~~~~i~~ 33 (76)
T PF13245_consen 10 SPLFVVQGPPGTGKTTTLAARIAE 33 (76)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH
Confidence 456678999999999 55555554
No 433
>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.
Probab=94.51 E-value=0.055 Score=44.40 Aligned_cols=34 Identities=18% Similarity=0.070 Sum_probs=24.3
Q ss_pred HHHHHHHhcCCCCcEEEEEEcCCCCChhHHHHHHhc
Q 047336 169 EELLDLLIEGPTQLSVVAILDSIGLDKTAFTAEAYN 204 (290)
Q Consensus 169 ~~L~~~L~~~~~~~~Vi~IvGmgGiGKTTLa~~vy~ 204 (290)
..+.+++... +...|.++|.+|+|||||...+..
T Consensus 4 ~~~~~~~~~~--~~~kv~~~G~~~~GKTsl~~~l~~ 37 (174)
T cd04153 4 SSLWSLFFPR--KEYKVIIVGLDNAGKTTILYQFLL 37 (174)
T ss_pred hHHHHHhcCC--CccEEEEECCCCCCHHHHHHHHcc
Confidence 3445544322 245678999999999999998865
No 434
>TIGR01351 adk adenylate kinases. Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.
Probab=94.51 E-value=0.027 Score=47.96 Aligned_cols=20 Identities=15% Similarity=0.165 Sum_probs=18.2
Q ss_pred EEEEcCCCCChhHHHHHHhc
Q 047336 185 VAILDSIGLDKTAFTAEAYN 204 (290)
Q Consensus 185 i~IvGmgGiGKTTLa~~vy~ 204 (290)
|.|+|++|+||||+|+.+-.
T Consensus 2 I~i~G~pGsGKsT~a~~La~ 21 (210)
T TIGR01351 2 LVLLGPPGSGKGTQAKRIAE 21 (210)
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 67899999999999999865
No 435
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=94.50 E-value=0.041 Score=54.39 Aligned_cols=45 Identities=13% Similarity=0.161 Sum_probs=36.8
Q ss_pred CcccccchhHHHHHHHHhcCCCCcEEEEEEcCCCCChhHHHHHHhc
Q 047336 159 RNTVGLDDRMEELLDLLIEGPTQLSVVAILDSIGLDKTAFTAEAYN 204 (290)
Q Consensus 159 ~~~vG~e~~~~~L~~~L~~~~~~~~Vi~IvGmgGiGKTTLa~~vy~ 204 (290)
.+++|.+..++.|.+++..+. -..-+-++|+.|+||||+|+.+-+
T Consensus 24 ~dliGq~~~v~~L~~~~~~gr-i~ha~L~~Gp~GvGKTt~Ar~lAk 68 (598)
T PRK09111 24 DDLIGQEAMVRTLTNAFETGR-IAQAFMLTGVRGVGKTTTARILAR 68 (598)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-CCceEEEECCCCCCHHHHHHHHHH
Confidence 569999999999999988653 123466899999999999988855
No 436
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=94.50 E-value=0.04 Score=45.54 Aligned_cols=37 Identities=11% Similarity=0.054 Sum_probs=24.8
Q ss_pred EEEEcCCCCChhHHHHHHhccccccccCCeeEEEECCCC
Q 047336 185 VAILDSIGLDKTAFTAEAYNSSYVKHYFDYLAWIPAPYQ 223 (290)
Q Consensus 185 i~IvGmgGiGKTTLa~~vy~d~~v~~~F~~~~wV~vs~~ 223 (290)
+-|.|.+|+|||+|+..+... ..+.. ..++|++...+
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~-~~~~g-~~v~~~s~e~~ 38 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYA-GLARG-EPGLYVTLEES 38 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHH-HHHCC-CcEEEEECCCC
Confidence 568999999999999876442 22221 34677776543
No 437
>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le
Probab=94.48 E-value=0.034 Score=45.67 Aligned_cols=21 Identities=24% Similarity=0.362 Sum_probs=18.6
Q ss_pred EEEEEcCCCCChhHHHHHHhc
Q 047336 184 VVAILDSIGLDKTAFTAEAYN 204 (290)
Q Consensus 184 Vi~IvGmgGiGKTTLa~~vy~ 204 (290)
-|+|+|.+|+|||||++.+.+
T Consensus 3 kv~l~G~~g~GKTtl~~~~~~ 23 (180)
T cd04137 3 KIAVLGSRSVGKSSLTVQFVE 23 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 477999999999999988865
No 438
>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional
Probab=94.48 E-value=0.031 Score=48.94 Aligned_cols=22 Identities=32% Similarity=0.318 Sum_probs=20.2
Q ss_pred cEEEEEEcCCCCChhHHHHHHh
Q 047336 182 LSVVAILDSIGLDKTAFTAEAY 203 (290)
Q Consensus 182 ~~Vi~IvGmgGiGKTTLa~~vy 203 (290)
-.+++|+|..|.|||||++.+.
T Consensus 29 Ge~~~i~G~nGsGKSTLl~~i~ 50 (250)
T PRK14245 29 KSVVAFIGPSGCGKSTFLRLFN 50 (250)
T ss_pred CCEEEEECCCCCCHHHHHHHHh
Confidence 4689999999999999999985
No 439
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=94.47 E-value=0.034 Score=46.25 Aligned_cols=26 Identities=12% Similarity=0.106 Sum_probs=23.2
Q ss_pred CCcEEEEEEcCCCCChhHHHHHHhcc
Q 047336 180 TQLSVVAILDSIGLDKTAFTAEAYNS 205 (290)
Q Consensus 180 ~~~~Vi~IvGmgGiGKTTLa~~vy~d 205 (290)
..+.-|+|+|.+|+|||||.+.+.+.
T Consensus 22 ~~~~~v~ivG~~~~GKSsli~~l~~~ 47 (196)
T PRK00454 22 DDGPEIAFAGRSNVGKSSLINALTNR 47 (196)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCC
Confidence 45778999999999999999999874
No 440
>cd02032 Bchl_like This family of proteins contains bchL and chlL. Protochlorophyllide reductase catalyzes the reductive formation of chlorophyllide from protochlorophyllide during biosynthesis of chlorophylls and bacteriochlorophylls. Three genes, bchL, bchN and bchB, are involved in light-independent protochlorophyllide reduction in bacteriochlorophyll biosynthesis. In cyanobacteria, algae, and gymnosperms, three similar genes, chlL, chlN and chlB are involved in protochlorophyllide reduction during chlorophylls biosynthesis. BchL/chlL, bchN/chlN and bchB/chlB exhibit significant sequence similarity to the nifH, nifD and nifK subunits of nitrogenase, respectively. Nitrogenase catalyzes the reductive formation of ammonia from dinitrogen.
Probab=94.46 E-value=0.029 Score=49.58 Aligned_cols=20 Identities=20% Similarity=0.333 Sum_probs=16.8
Q ss_pred EEEEEEcCCCCChhHHHHHH
Q 047336 183 SVVAILDSIGLDKTAFTAEA 202 (290)
Q Consensus 183 ~Vi~IvGmgGiGKTTLa~~v 202 (290)
.||+|.|-||+||||++-.+
T Consensus 1 ~~i~v~gKGGvGKTT~a~nL 20 (267)
T cd02032 1 MVLAVYGKGGIGKSTTSSNL 20 (267)
T ss_pred CEEEEecCCCCCHHHHHHHH
Confidence 37899999999999977654
No 441
>TIGR02016 BchX chlorophyllide reductase iron protein subunit X. This model represents the X subunit of the three-subunit enzyme, (bacterio)chlorophyllide reductase. This enzyme is responsible for the reduction of the chlorin B-ring and is closely related to the protochlorophyllide reductase complex which reduces the D-ring. Both of these complexes in turn are homologous to nitrogenase. This subunit is homologous to the nitrogenase component II, or "iron" protein.
Probab=94.46 E-value=0.028 Score=50.73 Aligned_cols=22 Identities=23% Similarity=0.229 Sum_probs=18.6
Q ss_pred EEEEEEcCCCCChhHHHHHHhc
Q 047336 183 SVVAILDSIGLDKTAFTAEAYN 204 (290)
Q Consensus 183 ~Vi~IvGmgGiGKTTLa~~vy~ 204 (290)
++|+|+|-||+||||+|-.+-.
T Consensus 1 ~vIav~gKGGvGKTT~a~nLA~ 22 (296)
T TIGR02016 1 RIIAIYGKGGSGKSFTTTNLSH 22 (296)
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4899999999999998876644
No 442
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=94.45 E-value=0.045 Score=54.47 Aligned_cols=45 Identities=18% Similarity=0.165 Sum_probs=36.2
Q ss_pred CcccccchhHHHHHHHHhcCCCCcEEEEEEcCCCCChhHHHHHHhc
Q 047336 159 RNTVGLDDRMEELLDLLIEGPTQLSVVAILDSIGLDKTAFTAEAYN 204 (290)
Q Consensus 159 ~~~vG~e~~~~~L~~~L~~~~~~~~Vi~IvGmgGiGKTTLa~~vy~ 204 (290)
.++||.+..++.|.+.+..+. -...+-++|..|+||||+|+.+.+
T Consensus 16 ~divGQe~vv~~L~~~l~~~r-l~hAyLf~Gp~GvGKTTlAr~lAk 60 (647)
T PRK07994 16 AEVVGQEHVLTALANALDLGR-LHHAYLFSGTRGVGKTTIARLLAK 60 (647)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHH
Confidence 468999999999999888654 123356899999999999998865
No 443
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=94.45 E-value=0.031 Score=49.09 Aligned_cols=24 Identities=13% Similarity=0.202 Sum_probs=21.7
Q ss_pred cEEEEEEcCCCCChhHHHHHHhcc
Q 047336 182 LSVVAILDSIGLDKTAFTAEAYNS 205 (290)
Q Consensus 182 ~~Vi~IvGmgGiGKTTLa~~vy~d 205 (290)
-.+++|+|..|.|||||++.+..-
T Consensus 30 Ge~~~I~G~NGsGKSTLl~~i~Gl 53 (251)
T PRK09544 30 GKILTLLGPNGAGKSTLVRVVLGL 53 (251)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCC
Confidence 468999999999999999999873
No 444
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=94.45 E-value=0.033 Score=45.62 Aligned_cols=24 Identities=13% Similarity=0.022 Sum_probs=21.6
Q ss_pred cEEEEEEcCCCCChhHHHHHHhcc
Q 047336 182 LSVVAILDSIGLDKTAFTAEAYNS 205 (290)
Q Consensus 182 ~~Vi~IvGmgGiGKTTLa~~vy~d 205 (290)
-.+++|+|..|.|||||++.+..-
T Consensus 27 Ge~~~i~G~nGsGKSTLl~~l~G~ 50 (166)
T cd03223 27 GDRLLITGPSGTGKSSLFRALAGL 50 (166)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 458999999999999999999874
No 445
>PLN02924 thymidylate kinase
Probab=94.44 E-value=0.084 Score=45.53 Aligned_cols=54 Identities=7% Similarity=-0.108 Sum_probs=33.7
Q ss_pred CcEEEEEEcCCCCChhHHHHHHhccccccccCCeeEEEECCCCCCHHHHHHHHHH
Q 047336 181 QLSVVAILDSIGLDKTAFTAEAYNSSYVKHYFDYLAWIPAPYQYDPDQILDTVTW 235 (290)
Q Consensus 181 ~~~Vi~IvGmgGiGKTTLa~~vy~d~~v~~~F~~~~wV~vs~~~~~~~ll~~Il~ 235 (290)
.-..|+|-|..|+||||+++.+.+..... .+....+=..+......+.+++++.
T Consensus 15 ~g~~IviEGiDGsGKsTq~~~L~~~l~~~-g~~v~~~~ep~~~~~~g~~ir~~l~ 68 (220)
T PLN02924 15 RGALIVLEGLDRSGKSTQCAKLVSFLKGL-GVAAELWRFPDRTTSVGQMISAYLS 68 (220)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhc-CCCceeeeCCCCCChHHHHHHHHHh
Confidence 35689999999999999999999844322 2443222111222334556666654
No 446
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=94.43 E-value=0.031 Score=48.52 Aligned_cols=24 Identities=21% Similarity=0.165 Sum_probs=21.4
Q ss_pred cEEEEEEcCCCCChhHHHHHHhcc
Q 047336 182 LSVVAILDSIGLDKTAFTAEAYNS 205 (290)
Q Consensus 182 ~~Vi~IvGmgGiGKTTLa~~vy~d 205 (290)
-.+++|+|..|.|||||++.+..-
T Consensus 27 Ge~~~l~G~nGsGKSTLl~~l~G~ 50 (240)
T PRK09493 27 GEVVVIIGPSGSGKSTLLRCINKL 50 (240)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCC
Confidence 468999999999999999999763
No 447
>PRK08939 primosomal protein DnaI; Reviewed
Probab=94.43 E-value=0.12 Score=46.95 Aligned_cols=56 Identities=16% Similarity=0.108 Sum_probs=34.8
Q ss_pred cchhHHHHHHHHhcC--CCCcEEEEEEcCCCCChhHHHHHHhccccccccCCeeEEEECC
Q 047336 164 LDDRMEELLDLLIEG--PTQLSVVAILDSIGLDKTAFTAEAYNSSYVKHYFDYLAWIPAP 221 (290)
Q Consensus 164 ~e~~~~~L~~~L~~~--~~~~~Vi~IvGmgGiGKTTLa~~vy~d~~v~~~F~~~~wV~vs 221 (290)
+........+++..- .....-+-++|..|+|||.||..+.+. ....=-.+.+++++
T Consensus 136 ~~~~~~~~~~fi~~~~~~~~~~gl~L~G~~G~GKThLa~Aia~~--l~~~g~~v~~~~~~ 193 (306)
T PRK08939 136 RLDALMAALDFLEAYPPGEKVKGLYLYGDFGVGKSYLLAAIANE--LAKKGVSSTLLHFP 193 (306)
T ss_pred HHHHHHHHHHHHHHhhccCCCCeEEEECCCCCCHHHHHHHHHHH--HHHcCCCEEEEEHH
Confidence 333444455555531 123456779999999999999999994 33322235666653
No 448
>PF00154 RecA: recA bacterial DNA recombination protein; InterPro: IPR013765 The recA gene product is a multifunctional enzyme that plays a role in homologous recombination, DNA repair and induction of the SOS response []. In homologous recombination, the protein functions as a DNA-dependent ATPase, promoting synapsis, heteroduplex formation and strand exchange between homologous DNAs []. RecA also acts as a protease cofactor that promotes autodigestion of the lexA product and phage repressors. The proteolytic inactivation of the lexA repressor by an activated form of recA may cause a derepression of the 20 or so genes involved in the SOS response, which regulates DNA repair, induced mutagenesis, delayed cell division and prophage induction in response to DNA damage []. RecA is a protein of about 350 amino-acid residues. Its sequence is very well conserved [, , ] among eubacterial species. It is also found in the chloroplast of plants []. RecA-like proteins are found in archaea and diverse eukaryotic organisms, like fission yeast, mouse or human. In the filament visualised by X-ray crystallography, beta-strand 3, the loop C-terminal to beta-strand 2, and alpha-helix D of the core domain form one surface that packs against alpha-helix A and beta-strand 0 (the N-terminal domain) of an adjacent monomer during polymerisation []. The core ATP-binding site domain is well conserved, with 14 invariant residues. It contains the nucleotide binding loop between beta-strand 1 and alpha-helix C. The Escherichia coli sequence GPESSGKT matches the consensus sequence of amino acids (G/A)XXXXGK(T/S) for the Walker A box (also referred to as the P-loop) found in a number of nucleoside triphosphate (NTP)-binding proteins. Another nucleotide binding motif, the Walker B box is found at beta-strand 4 in the RecA structure. The Walker B box is characterised by four hydrophobic amino acids followed by an acidic residue (usually aspartate). Nucleotide specificity and additional ATP binding interactions are contributed by the amino acid residues at beta-strand 2 and the loop C-terminal to that strand, all of which are greater than 90% conserved among bacterial RecA proteins.; GO: 0003697 single-stranded DNA binding, 0005524 ATP binding, 0006281 DNA repair; PDB: 2IN0_A 1MO3_A 3IFJ_A 2IN8_A 2IMZ_B 1G18_A 1MO4_A 3IGD_A 2L8L_A 2IN9_A ....
Probab=94.43 E-value=0.06 Score=49.01 Aligned_cols=47 Identities=21% Similarity=0.185 Sum_probs=34.2
Q ss_pred CCcEEEEEEcCCCCChhHHHHHHhccccccccCCeeEEEECCCCCCHHH
Q 047336 180 TQLSVVAILDSIGLDKTAFTAEAYNSSYVKHYFDYLAWIPAPYQYDPDQ 228 (290)
Q Consensus 180 ~~~~Vi~IvGmgGiGKTTLa~~vy~d~~v~~~F~~~~wV~vs~~~~~~~ 228 (290)
+.-+++-|+|..|+||||||-.+.. .....-..++||.....++...
T Consensus 51 p~G~ivEi~G~~ssGKttLaL~~ia--~~q~~g~~~a~ID~e~~ld~~~ 97 (322)
T PF00154_consen 51 PRGRIVEIYGPESSGKTTLALHAIA--EAQKQGGICAFIDAEHALDPEY 97 (322)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHHH--HHHHTT-EEEEEESSS---HHH
T ss_pred ccCceEEEeCCCCCchhhhHHHHHH--hhhcccceeEEecCcccchhhH
Confidence 4567999999999999999999987 4444456789998877666543
No 449
>PRK14528 adenylate kinase; Provisional
Probab=94.43 E-value=0.033 Score=46.59 Aligned_cols=22 Identities=9% Similarity=0.066 Sum_probs=19.4
Q ss_pred EEEEEEcCCCCChhHHHHHHhc
Q 047336 183 SVVAILDSIGLDKTAFTAEAYN 204 (290)
Q Consensus 183 ~Vi~IvGmgGiGKTTLa~~vy~ 204 (290)
+.|.|.|++|+||||+|+.+..
T Consensus 2 ~~i~i~G~pGsGKtt~a~~la~ 23 (186)
T PRK14528 2 KNIIFMGPPGAGKGTQAKILCE 23 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4578999999999999999865
No 450
>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases. Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.
Probab=94.42 E-value=0.064 Score=44.54 Aligned_cols=24 Identities=17% Similarity=0.046 Sum_probs=20.4
Q ss_pred cEEEEEEcCCCCChhHHHHHHhcc
Q 047336 182 LSVVAILDSIGLDKTAFTAEAYNS 205 (290)
Q Consensus 182 ~~Vi~IvGmgGiGKTTLa~~vy~d 205 (290)
-..|.|+|.+|+|||||++.+..+
T Consensus 17 ~~~i~ivG~~~~GKTsli~~l~~~ 40 (184)
T smart00178 17 HAKILFLGLDNAGKTTLLHMLKND 40 (184)
T ss_pred cCEEEEECCCCCCHHHHHHHHhcC
Confidence 456789999999999999988764
No 451
>PF08303 tRNA_lig_kinase: tRNA ligase kinase domain; InterPro: IPR015966 This entry represents a kinase domain found in fungal tRNA ligases []. Please see the following relevant references: [, ].; GO: 0003972 RNA ligase (ATP) activity, 0005524 ATP binding, 0006388 tRNA splicing, via endonucleolytic cleavage and ligation
Probab=94.42 E-value=0.056 Score=44.17 Aligned_cols=45 Identities=20% Similarity=0.251 Sum_probs=34.1
Q ss_pred EEEEcCCCCChhHHHHHHhccccccccCCeeEEEEC-----CCCCCHHHHHHHHHHHhh
Q 047336 185 VAILDSIGLDKTAFTAEAYNSSYVKHYFDYLAWIPA-----PYQYDPDQILDTVTWLSR 238 (290)
Q Consensus 185 i~IvGmgGiGKTTLa~~vy~d~~v~~~F~~~~wV~v-----s~~~~~~~ll~~Il~~l~ 238 (290)
|.-++..|+||||+|..+.+ .|.- |-+| +.. ....+.+.+++.|.
T Consensus 2 lvPIAtiGCGKTTva~aL~~------LFg~--wgHvQnDnI~~k-~~~~f~~~~l~~L~ 51 (168)
T PF08303_consen 2 LVPIATIGCGKTTVALALSN------LFGE--WGHVQNDNITGK-RKPKFIKAVLELLA 51 (168)
T ss_pred EeeecCCCcCHHHHHHHHHH------HcCC--CCccccCCCCCC-CHHHHHHHHHHHHh
Confidence 44568899999999998887 4554 5544 344 67889999999983
No 452
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=94.42 E-value=0.075 Score=42.93 Aligned_cols=25 Identities=8% Similarity=0.070 Sum_probs=21.6
Q ss_pred cEEEEEEcCCCCChhHHHHHHhccc
Q 047336 182 LSVVAILDSIGLDKTAFTAEAYNSS 206 (290)
Q Consensus 182 ~~Vi~IvGmgGiGKTTLa~~vy~d~ 206 (290)
-..|+++|++|+||+||...+..+.
T Consensus 102 ~~~v~~~G~~nvGKStliN~l~~~~ 126 (157)
T cd01858 102 QISVGFIGYPNVGKSSIINTLRSKK 126 (157)
T ss_pred ceEEEEEeCCCCChHHHHHHHhcCC
Confidence 4567899999999999999998754
No 453
>PF02367 UPF0079: Uncharacterised P-loop hydrolase UPF0079; InterPro: IPR003442 This group consists of bacterial proteins, which contain a P-loop. They are probably essential to bacteria as members are found in all genomes so far sequenced and no equivalent genes have been found in the archaea and eukaryotes, suggesting the protein may be involved in cell wall biosynthesis. The sequence of YjeE, from Haemophilus influenzae, has been determined to 1.7-A resolution. The protein has a nucleotide-binding fold with a four-stranded parallel beta-sheet flanked by antiparallel beta-strands on each side. The topology of the beta-sheet is unique among P-loop proteins and has features of different families of enzymes. ADP has been shown to bind to the P-loop in the presence of Mg2+ and ATPase activity has been confirmed by kinetic measurements [].; PDB: 1HTW_A 1FL9_A.
Probab=94.42 E-value=0.054 Score=42.29 Aligned_cols=26 Identities=19% Similarity=0.240 Sum_probs=22.2
Q ss_pred CcEEEEEEcCCCCChhHHHHHHhccc
Q 047336 181 QLSVVAILDSIGLDKTAFTAEAYNSS 206 (290)
Q Consensus 181 ~~~Vi~IvGmgGiGKTTLa~~vy~d~ 206 (290)
.-.||...|.=|.|||||+|.+....
T Consensus 14 ~g~vi~L~GdLGaGKTtf~r~l~~~l 39 (123)
T PF02367_consen 14 PGDVILLSGDLGAGKTTFVRGLARAL 39 (123)
T ss_dssp S-EEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHc
Confidence 35799999999999999999998744
No 454
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=94.42 E-value=0.033 Score=48.83 Aligned_cols=25 Identities=16% Similarity=0.163 Sum_probs=22.0
Q ss_pred CcEEEEEEcCCCCChhHHHHHHhcc
Q 047336 181 QLSVVAILDSIGLDKTAFTAEAYNS 205 (290)
Q Consensus 181 ~~~Vi~IvGmgGiGKTTLa~~vy~d 205 (290)
.-.+++|+|..|.|||||++.+..-
T Consensus 30 ~Ge~~~l~G~nGsGKSTLl~~l~Gl 54 (255)
T PRK11300 30 EQEIVSLIGPNGAGKTTVFNCLTGF 54 (255)
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCC
Confidence 3568999999999999999999863
No 455
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=94.42 E-value=0.033 Score=47.50 Aligned_cols=24 Identities=21% Similarity=0.185 Sum_probs=21.7
Q ss_pred cEEEEEEcCCCCChhHHHHHHhcc
Q 047336 182 LSVVAILDSIGLDKTAFTAEAYNS 205 (290)
Q Consensus 182 ~~Vi~IvGmgGiGKTTLa~~vy~d 205 (290)
=.+++|+|..|.|||||++.+...
T Consensus 24 Ge~~~i~G~nGsGKSTLl~~l~G~ 47 (213)
T TIGR01277 24 GEIVAIMGPSGAGKSTLLNLIAGF 47 (213)
T ss_pred CcEEEEECCCCCCHHHHHHHHhcC
Confidence 468999999999999999999874
No 456
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=94.42 E-value=0.061 Score=45.45 Aligned_cols=34 Identities=15% Similarity=0.160 Sum_probs=24.7
Q ss_pred HHHHHHHhcCCCCcEEEEEEcCCCCChhHHHHHHhc
Q 047336 169 EELLDLLIEGPTQLSVVAILDSIGLDKTAFTAEAYN 204 (290)
Q Consensus 169 ~~L~~~L~~~~~~~~Vi~IvGmgGiGKTTLa~~vy~ 204 (290)
.+.+..+.... -++..|.|.+|.||||+++.+.+
T Consensus 7 ~~a~~~~l~~~--~~~~~l~G~aGtGKT~~l~~~~~ 40 (196)
T PF13604_consen 7 REAVRAILTSG--DRVSVLQGPAGTGKTTLLKALAE 40 (196)
T ss_dssp HHHHHHHHHCT--CSEEEEEESTTSTHHHHHHHHHH
T ss_pred HHHHHHHHhcC--CeEEEEEECCCCCHHHHHHHHHH
Confidence 34444444333 45777899999999999998876
No 457
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=94.41 E-value=0.032 Score=48.36 Aligned_cols=23 Identities=26% Similarity=0.234 Sum_probs=21.0
Q ss_pred cEEEEEEcCCCCChhHHHHHHhc
Q 047336 182 LSVVAILDSIGLDKTAFTAEAYN 204 (290)
Q Consensus 182 ~~Vi~IvGmgGiGKTTLa~~vy~ 204 (290)
-.+++|+|..|.|||||++.+..
T Consensus 28 Ge~~~i~G~nGsGKSTLl~~l~G 50 (237)
T cd03252 28 GEVVGIVGRSGSGKSTLTKLIQR 50 (237)
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 45899999999999999999975
No 458
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.41 E-value=0.034 Score=45.80 Aligned_cols=24 Identities=17% Similarity=0.146 Sum_probs=21.5
Q ss_pred cEEEEEEcCCCCChhHHHHHHhcc
Q 047336 182 LSVVAILDSIGLDKTAFTAEAYNS 205 (290)
Q Consensus 182 ~~Vi~IvGmgGiGKTTLa~~vy~d 205 (290)
-.+++|+|..|.|||||.+.+...
T Consensus 26 Ge~~~i~G~nGsGKStLl~~l~G~ 49 (173)
T cd03230 26 GEIYGLLGPNGAGKTTLIKIILGL 49 (173)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCC
Confidence 458999999999999999999773
No 459
>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional
Probab=94.41 E-value=0.031 Score=49.17 Aligned_cols=23 Identities=26% Similarity=0.281 Sum_probs=20.6
Q ss_pred cEEEEEEcCCCCChhHHHHHHhc
Q 047336 182 LSVVAILDSIGLDKTAFTAEAYN 204 (290)
Q Consensus 182 ~~Vi~IvGmgGiGKTTLa~~vy~ 204 (290)
-.+++|+|..|.|||||++.+..
T Consensus 38 Ge~~~l~G~nGsGKSTLl~~l~G 60 (259)
T PRK14274 38 NEVTAIIGPSGCGKSTFIKTLNL 60 (259)
T ss_pred CCEEEEECCCCCCHHHHHHHHHh
Confidence 45899999999999999999864
No 460
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=94.41 E-value=0.033 Score=48.54 Aligned_cols=23 Identities=13% Similarity=0.160 Sum_probs=21.0
Q ss_pred cEEEEEEcCCCCChhHHHHHHhc
Q 047336 182 LSVVAILDSIGLDKTAFTAEAYN 204 (290)
Q Consensus 182 ~~Vi~IvGmgGiGKTTLa~~vy~ 204 (290)
-.+++|+|..|.|||||++.+..
T Consensus 29 Ge~~~i~G~nGsGKSTLl~~l~G 51 (241)
T PRK14250 29 GAIYTIVGPSGAGKSTLIKLINR 51 (241)
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 45899999999999999999986
No 461
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=94.41 E-value=0.17 Score=48.22 Aligned_cols=48 Identities=23% Similarity=0.325 Sum_probs=32.2
Q ss_pred cEEEEEEcCCCCChhHHHHHHhcccccccc-CCe-eEEEECCCCCCHHHHHHHHHHHh
Q 047336 182 LSVVAILDSIGLDKTAFTAEAYNSSYVKHY-FDY-LAWIPAPYQYDPDQILDTVTWLS 237 (290)
Q Consensus 182 ~~Vi~IvGmgGiGKTTLa~~vy~d~~v~~~-F~~-~~wV~vs~~~~~~~ll~~Il~~l 237 (290)
..-+-|+|..|+|||+|++.+.+ .+... .+. ..|++. .+++.++...+
T Consensus 130 ~n~l~lyG~~G~GKTHLl~ai~~--~l~~~~~~~~v~yi~~------~~f~~~~~~~~ 179 (440)
T PRK14088 130 YNPLFIYGGVGLGKTHLLQSIGN--YVVQNEPDLRVMYITS------EKFLNDLVDSM 179 (440)
T ss_pred CCeEEEEcCCCCcHHHHHHHHHH--HHHHhCCCCeEEEEEH------HHHHHHHHHHH
Confidence 44588999999999999999999 44333 343 455553 34555555444
No 462
>cd00880 Era_like Era (E. coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se
Probab=94.40 E-value=0.021 Score=44.86 Aligned_cols=19 Identities=5% Similarity=0.160 Sum_probs=17.2
Q ss_pred EEcCCCCChhHHHHHHhcc
Q 047336 187 ILDSIGLDKTAFTAEAYNS 205 (290)
Q Consensus 187 IvGmgGiGKTTLa~~vy~d 205 (290)
|+|++|+|||||++.+++.
T Consensus 1 i~G~~gsGKstl~~~l~~~ 19 (163)
T cd00880 1 LFGRTNAGKSSLLNALLGQ 19 (163)
T ss_pred CcCCCCCCHHHHHHHHhCc
Confidence 5799999999999999874
No 463
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=94.39 E-value=0.035 Score=52.31 Aligned_cols=24 Identities=29% Similarity=0.213 Sum_probs=20.7
Q ss_pred CcEEEEEEcCCCCChhHHHHHHhc
Q 047336 181 QLSVVAILDSIGLDKTAFTAEAYN 204 (290)
Q Consensus 181 ~~~Vi~IvGmgGiGKTTLa~~vy~ 204 (290)
...++.++|++|+||||++.++-.
T Consensus 222 ~~~vi~lvGptGvGKTTtaaKLA~ 245 (432)
T PRK12724 222 QRKVVFFVGPTGSGKTTSIAKLAA 245 (432)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 357899999999999999988765
No 464
>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function. Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w
Probab=94.39 E-value=0.031 Score=47.26 Aligned_cols=20 Identities=20% Similarity=0.238 Sum_probs=18.9
Q ss_pred EEEEEcCCCCChhHHHHHHh
Q 047336 184 VVAILDSIGLDKTAFTAEAY 203 (290)
Q Consensus 184 Vi~IvGmgGiGKTTLa~~vy 203 (290)
+++|+|..|.|||||++.++
T Consensus 24 ~~~i~G~nGsGKStll~al~ 43 (197)
T cd03278 24 LTAIVGPNGSGKSNIIDAIR 43 (197)
T ss_pred cEEEECCCCCCHHHHHHHHH
Confidence 88999999999999999886
No 465
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=94.39 E-value=0.033 Score=48.45 Aligned_cols=24 Identities=21% Similarity=0.115 Sum_probs=21.5
Q ss_pred cEEEEEEcCCCCChhHHHHHHhcc
Q 047336 182 LSVVAILDSIGLDKTAFTAEAYNS 205 (290)
Q Consensus 182 ~~Vi~IvGmgGiGKTTLa~~vy~d 205 (290)
-.+++|+|..|.|||||.+.+..-
T Consensus 29 Ge~~~l~G~nGsGKSTLl~~l~G~ 52 (241)
T PRK10895 29 GEIVGLLGPNGAGKTTTFYMVVGI 52 (241)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCC
Confidence 468999999999999999999773
No 466
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=94.38 E-value=0.034 Score=46.00 Aligned_cols=24 Identities=17% Similarity=0.140 Sum_probs=21.4
Q ss_pred cEEEEEEcCCCCChhHHHHHHhcc
Q 047336 182 LSVVAILDSIGLDKTAFTAEAYNS 205 (290)
Q Consensus 182 ~~Vi~IvGmgGiGKTTLa~~vy~d 205 (290)
-.+++|+|..|.|||||++.+..-
T Consensus 28 Ge~~~i~G~nGsGKStLl~~l~G~ 51 (178)
T cd03247 28 GEKIALLGRSGSGKSTLLQLLTGD 51 (178)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcc
Confidence 458999999999999999999873
No 467
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=94.38 E-value=0.033 Score=48.70 Aligned_cols=23 Identities=30% Similarity=0.195 Sum_probs=20.8
Q ss_pred cEEEEEEcCCCCChhHHHHHHhc
Q 047336 182 LSVVAILDSIGLDKTAFTAEAYN 204 (290)
Q Consensus 182 ~~Vi~IvGmgGiGKTTLa~~vy~ 204 (290)
-.+++|+|..|.|||||++.+..
T Consensus 29 Ge~~~i~G~nGsGKSTLl~~l~G 51 (250)
T PRK11264 29 GEVVAIIGPSGSGKTTLLRCINL 51 (250)
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 45899999999999999999876
No 468
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=94.38 E-value=0.032 Score=49.35 Aligned_cols=24 Identities=13% Similarity=0.077 Sum_probs=21.5
Q ss_pred cEEEEEEcCCCCChhHHHHHHhcc
Q 047336 182 LSVVAILDSIGLDKTAFTAEAYNS 205 (290)
Q Consensus 182 ~~Vi~IvGmgGiGKTTLa~~vy~d 205 (290)
-.+++|+|..|.|||||++.+..-
T Consensus 37 Ge~~~i~G~nGsGKSTLl~~l~Gl 60 (265)
T PRK10575 37 GKVTGLIGHNGSGKSTLLKMLGRH 60 (265)
T ss_pred CCEEEEECCCCCCHHHHHHHHcCC
Confidence 468999999999999999999863
No 469
>PRK14974 cell division protein FtsY; Provisional
Probab=94.37 E-value=0.037 Score=50.80 Aligned_cols=24 Identities=21% Similarity=0.163 Sum_probs=20.6
Q ss_pred CcEEEEEEcCCCCChhHHHHHHhc
Q 047336 181 QLSVVAILDSIGLDKTAFTAEAYN 204 (290)
Q Consensus 181 ~~~Vi~IvGmgGiGKTTLa~~vy~ 204 (290)
+..+|.++|++|+||||++..+..
T Consensus 139 ~~~vi~~~G~~GvGKTTtiakLA~ 162 (336)
T PRK14974 139 KPVVIVFVGVNGTGKTTTIAKLAY 162 (336)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHH
Confidence 478999999999999997776665
No 470
>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily. IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.
Probab=94.36 E-value=0.033 Score=44.92 Aligned_cols=23 Identities=17% Similarity=0.329 Sum_probs=20.5
Q ss_pred EEEEEEcCCCCChhHHHHHHhcc
Q 047336 183 SVVAILDSIGLDKTAFTAEAYNS 205 (290)
Q Consensus 183 ~Vi~IvGmgGiGKTTLa~~vy~d 205 (290)
++|+|+|..|+|||||...+...
T Consensus 1 ~~i~iiG~~~~GKtsli~~l~~~ 23 (168)
T cd01887 1 PVVTVMGHVDHGKTTLLDKIRKT 23 (168)
T ss_pred CEEEEEecCCCCHHHHHHHHHhc
Confidence 47999999999999999998764
No 471
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=94.35 E-value=0.034 Score=48.28 Aligned_cols=23 Identities=17% Similarity=0.101 Sum_probs=21.2
Q ss_pred cEEEEEEcCCCCChhHHHHHHhc
Q 047336 182 LSVVAILDSIGLDKTAFTAEAYN 204 (290)
Q Consensus 182 ~~Vi~IvGmgGiGKTTLa~~vy~ 204 (290)
-.+++|+|..|.|||||++.+..
T Consensus 47 Ge~~~i~G~NGsGKSTLl~~i~G 69 (236)
T cd03267 47 GEIVGFIGPNGAGKTTTLKILSG 69 (236)
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 46899999999999999999986
No 472
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=94.35 E-value=0.036 Score=45.25 Aligned_cols=23 Identities=22% Similarity=0.151 Sum_probs=21.1
Q ss_pred cEEEEEEcCCCCChhHHHHHHhc
Q 047336 182 LSVVAILDSIGLDKTAFTAEAYN 204 (290)
Q Consensus 182 ~~Vi~IvGmgGiGKTTLa~~vy~ 204 (290)
-.+++|+|..|.|||||.+.+..
T Consensus 26 Ge~~~l~G~nGsGKSTLl~~i~G 48 (163)
T cd03216 26 GEVHALLGENGAGKSTLMKILSG 48 (163)
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 46899999999999999999986
No 473
>PRK14239 phosphate transporter ATP-binding protein; Provisional
Probab=94.35 E-value=0.034 Score=48.66 Aligned_cols=23 Identities=13% Similarity=0.224 Sum_probs=20.5
Q ss_pred cEEEEEEcCCCCChhHHHHHHhc
Q 047336 182 LSVVAILDSIGLDKTAFTAEAYN 204 (290)
Q Consensus 182 ~~Vi~IvGmgGiGKTTLa~~vy~ 204 (290)
-.+++|+|..|.|||||++.+..
T Consensus 31 Ge~~~i~G~nGsGKSTLl~~l~G 53 (252)
T PRK14239 31 NEITALIGPSGSGKSTLLRSINR 53 (252)
T ss_pred CcEEEEECCCCCCHHHHHHHHhc
Confidence 45899999999999999999953
No 474
>PRK13234 nifH nitrogenase reductase; Reviewed
Probab=94.33 E-value=0.037 Score=49.85 Aligned_cols=22 Identities=18% Similarity=0.326 Sum_probs=18.5
Q ss_pred CcEEEEEEcCCCCChhHHHHHH
Q 047336 181 QLSVVAILDSIGLDKTAFTAEA 202 (290)
Q Consensus 181 ~~~Vi~IvGmgGiGKTTLa~~v 202 (290)
+.++|+|.|-||+||||++-.+
T Consensus 3 ~~~~iai~~KGGvGKTt~~~nL 24 (295)
T PRK13234 3 KLRQIAFYGKGGIGKSTTSQNT 24 (295)
T ss_pred cceEEEEECCCCccHHHHHHHH
Confidence 4689999999999999977653
No 475
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=94.33 E-value=0.035 Score=46.12 Aligned_cols=24 Identities=17% Similarity=0.268 Sum_probs=21.4
Q ss_pred cEEEEEEcCCCCChhHHHHHHhcc
Q 047336 182 LSVVAILDSIGLDKTAFTAEAYNS 205 (290)
Q Consensus 182 ~~Vi~IvGmgGiGKTTLa~~vy~d 205 (290)
-.+++|+|..|.|||||.+.+..-
T Consensus 26 G~~~~i~G~nGsGKSTLl~~l~G~ 49 (182)
T cd03215 26 GEIVGIAGLVGNGQTELAEALFGL 49 (182)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCC
Confidence 458999999999999999999863
No 476
>PRK14730 coaE dephospho-CoA kinase; Provisional
Probab=94.33 E-value=0.035 Score=46.93 Aligned_cols=22 Identities=9% Similarity=0.071 Sum_probs=20.1
Q ss_pred EEEEEEcCCCCChhHHHHHHhc
Q 047336 183 SVVAILDSIGLDKTAFTAEAYN 204 (290)
Q Consensus 183 ~Vi~IvGmgGiGKTTLa~~vy~ 204 (290)
..|+|+|+.|+||||+++.+.+
T Consensus 2 ~~i~itG~~gsGKst~~~~l~~ 23 (195)
T PRK14730 2 RRIGLTGGIASGKSTVGNYLAQ 23 (195)
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 3699999999999999999876
No 477
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.32 E-value=0.037 Score=45.50 Aligned_cols=23 Identities=22% Similarity=0.160 Sum_probs=21.2
Q ss_pred cEEEEEEcCCCCChhHHHHHHhc
Q 047336 182 LSVVAILDSIGLDKTAFTAEAYN 204 (290)
Q Consensus 182 ~~Vi~IvGmgGiGKTTLa~~vy~ 204 (290)
-.+++|+|..|.|||||.+.+..
T Consensus 28 G~~~~l~G~nGsGKstLl~~i~G 50 (171)
T cd03228 28 GEKVAIVGPSGSGKSTLLKLLLR 50 (171)
T ss_pred CCEEEEECCCCCCHHHHHHHHHc
Confidence 46899999999999999999987
No 478
>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.
Probab=94.32 E-value=0.034 Score=45.23 Aligned_cols=21 Identities=19% Similarity=0.218 Sum_probs=18.5
Q ss_pred EEEEcCCCCChhHHHHHHhcc
Q 047336 185 VAILDSIGLDKTAFTAEAYNS 205 (290)
Q Consensus 185 i~IvGmgGiGKTTLa~~vy~d 205 (290)
|.|+|.+|+|||||...+.+.
T Consensus 2 i~ivG~~~vGKTsli~~~~~~ 22 (164)
T cd04162 2 ILVLGLDGAGKTSLLHSLSSE 22 (164)
T ss_pred EEEECCCCCCHHHHHHHHhcC
Confidence 579999999999999888764
No 479
>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional
Probab=94.30 E-value=0.034 Score=48.99 Aligned_cols=23 Identities=17% Similarity=0.185 Sum_probs=20.9
Q ss_pred cEEEEEEcCCCCChhHHHHHHhc
Q 047336 182 LSVVAILDSIGLDKTAFTAEAYN 204 (290)
Q Consensus 182 ~~Vi~IvGmgGiGKTTLa~~vy~ 204 (290)
=.+++|+|..|.|||||++.+..
T Consensus 39 Ge~~~i~G~nGsGKSTLl~~l~G 61 (260)
T PRK10744 39 NQVTAFIGPSGCGKSTLLRTFNR 61 (260)
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 46899999999999999999975
No 480
>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional
Probab=94.30 E-value=0.034 Score=48.68 Aligned_cols=23 Identities=17% Similarity=0.215 Sum_probs=20.8
Q ss_pred cEEEEEEcCCCCChhHHHHHHhc
Q 047336 182 LSVVAILDSIGLDKTAFTAEAYN 204 (290)
Q Consensus 182 ~~Vi~IvGmgGiGKTTLa~~vy~ 204 (290)
-.+++|+|..|.|||||.+.+..
T Consensus 30 Ge~~~l~G~nGsGKSTLl~~l~G 52 (253)
T PRK14267 30 NGVFALMGPSGCGKSTLLRTFNR 52 (253)
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 45899999999999999999975
No 481
>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional
Probab=94.30 E-value=0.035 Score=48.60 Aligned_cols=23 Identities=26% Similarity=0.255 Sum_probs=20.9
Q ss_pred cEEEEEEcCCCCChhHHHHHHhc
Q 047336 182 LSVVAILDSIGLDKTAFTAEAYN 204 (290)
Q Consensus 182 ~~Vi~IvGmgGiGKTTLa~~vy~ 204 (290)
-.+++|+|..|.|||||++.+..
T Consensus 30 Ge~~~i~G~nGsGKSTLl~~l~G 52 (252)
T PRK14256 30 NSVTAIIGPSGCGKSTVLRSINR 52 (252)
T ss_pred CCEEEEECCCCCCHHHHHHHHHh
Confidence 45899999999999999999976
No 482
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=94.30 E-value=0.034 Score=49.33 Aligned_cols=23 Identities=13% Similarity=0.190 Sum_probs=20.9
Q ss_pred cEEEEEEcCCCCChhHHHHHHhc
Q 047336 182 LSVVAILDSIGLDKTAFTAEAYN 204 (290)
Q Consensus 182 ~~Vi~IvGmgGiGKTTLa~~vy~ 204 (290)
=.+++|+|..|.|||||.+.+..
T Consensus 27 Ge~~~i~G~nGsGKSTLl~~l~G 49 (271)
T PRK13638 27 SPVTGLVGANGCGKSTLFMNLSG 49 (271)
T ss_pred CCEEEEECCCCCCHHHHHHHHcC
Confidence 45899999999999999999976
No 483
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=94.29 E-value=0.035 Score=47.84 Aligned_cols=24 Identities=21% Similarity=0.271 Sum_probs=21.5
Q ss_pred CcEEEEEEcCCCCChhHHHHHHhc
Q 047336 181 QLSVVAILDSIGLDKTAFTAEAYN 204 (290)
Q Consensus 181 ~~~Vi~IvGmgGiGKTTLa~~vy~ 204 (290)
.=.+++|+|..|.|||||++.+..
T Consensus 25 ~Ge~~~l~G~nGsGKSTLl~~l~G 48 (230)
T TIGR03410 25 KGEVTCVLGRNGVGKTTLLKTLMG 48 (230)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhC
Confidence 356899999999999999999976
No 484
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.29 E-value=0.035 Score=49.23 Aligned_cols=23 Identities=13% Similarity=0.107 Sum_probs=21.2
Q ss_pred cEEEEEEcCCCCChhHHHHHHhc
Q 047336 182 LSVVAILDSIGLDKTAFTAEAYN 204 (290)
Q Consensus 182 ~~Vi~IvGmgGiGKTTLa~~vy~ 204 (290)
-.+++|+|..|.|||||++.+..
T Consensus 50 Ge~~~l~G~nGsGKSTLl~~L~G 72 (269)
T cd03294 50 GEIFVIMGLSGSGKSTLLRCINR 72 (269)
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 46899999999999999999976
No 485
>PHA02575 1 deoxynucleoside monophosphate kinase; Provisional
Probab=94.29 E-value=0.036 Score=47.73 Aligned_cols=21 Identities=14% Similarity=0.066 Sum_probs=19.3
Q ss_pred EEEEEcCCCCChhHHHHHHhc
Q 047336 184 VVAILDSIGLDKTAFTAEAYN 204 (290)
Q Consensus 184 Vi~IvGmgGiGKTTLa~~vy~ 204 (290)
+|+|+||.|+||+|.|+.+-.
T Consensus 2 iI~i~G~~gsGKstva~~~~~ 22 (227)
T PHA02575 2 LIAISGKKRSGKDTVADFIIE 22 (227)
T ss_pred EEEEeCCCCCCHHHHHHHHHh
Confidence 799999999999999998854
No 486
>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily. RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu
Probab=94.28 E-value=0.036 Score=44.78 Aligned_cols=20 Identities=25% Similarity=0.473 Sum_probs=17.1
Q ss_pred EEEEcCCCCChhHHHHHHhc
Q 047336 185 VAILDSIGLDKTAFTAEAYN 204 (290)
Q Consensus 185 i~IvGmgGiGKTTLa~~vy~ 204 (290)
|.|+|.+|+|||||+....+
T Consensus 2 i~vvG~~~~GKtsli~~~~~ 21 (165)
T cd04146 2 IAVLGASGVGKSALVVRFLT 21 (165)
T ss_pred EEEECCCCCcHHHHHHHHHh
Confidence 68999999999999976543
No 487
>PRK00279 adk adenylate kinase; Reviewed
Probab=94.27 E-value=0.033 Score=47.63 Aligned_cols=21 Identities=14% Similarity=0.058 Sum_probs=18.8
Q ss_pred EEEEEcCCCCChhHHHHHHhc
Q 047336 184 VVAILDSIGLDKTAFTAEAYN 204 (290)
Q Consensus 184 Vi~IvGmgGiGKTTLa~~vy~ 204 (290)
.|.|.|++|+||||+|+.+-.
T Consensus 2 ~I~v~G~pGsGKsT~a~~la~ 22 (215)
T PRK00279 2 RLILLGPPGAGKGTQAKFIAE 22 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999998865
No 488
>PHA02518 ParA-like protein; Provisional
Probab=94.27 E-value=0.034 Score=46.97 Aligned_cols=20 Identities=25% Similarity=0.443 Sum_probs=16.7
Q ss_pred EEEEEEcC-CCCChhHHHHHH
Q 047336 183 SVVAILDS-IGLDKTAFTAEA 202 (290)
Q Consensus 183 ~Vi~IvGm-gGiGKTTLa~~v 202 (290)
++|+|++. ||+||||+|-.+
T Consensus 1 ~ii~v~~~KGGvGKTT~a~~l 21 (211)
T PHA02518 1 KIIAVLNQKGGAGKTTVATNL 21 (211)
T ss_pred CEEEEEcCCCCCCHHHHHHHH
Confidence 37888865 999999998875
No 489
>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=94.26 E-value=0.035 Score=49.46 Aligned_cols=23 Identities=17% Similarity=0.108 Sum_probs=20.9
Q ss_pred cEEEEEEcCCCCChhHHHHHHhc
Q 047336 182 LSVVAILDSIGLDKTAFTAEAYN 204 (290)
Q Consensus 182 ~~Vi~IvGmgGiGKTTLa~~vy~ 204 (290)
-.+++|+|..|.|||||++.+..
T Consensus 33 Ge~~~l~G~nGsGKSTLl~~i~G 55 (280)
T PRK13649 33 GSYTAFIGHTGSGKSTIMQLLNG 55 (280)
T ss_pred CcEEEEECCCCCCHHHHHHHHhC
Confidence 45899999999999999999976
No 490
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=94.26 E-value=0.14 Score=50.97 Aligned_cols=56 Identities=11% Similarity=0.116 Sum_probs=38.5
Q ss_pred CCcEEEEEEcCCCCChhHHHHHHhccccccccCCeeEEEECCCCCCHHHHHHHHHHHhhhc
Q 047336 180 TQLSVVAILDSIGLDKTAFTAEAYNSSYVKHYFDYLAWIPAPYQYDPDQILDTVTWLSRRN 240 (290)
Q Consensus 180 ~~~~Vi~IvGmgGiGKTTLa~~vy~d~~v~~~F~~~~wV~vs~~~~~~~ll~~Il~~l~~~ 240 (290)
+.-++.-..|++|+||||||.-|-++.. | .++=|..|..-+...+-..|..-+..+
T Consensus 324 P~kKilLL~GppGlGKTTLAHViAkqaG----Y-sVvEINASDeRt~~~v~~kI~~avq~~ 379 (877)
T KOG1969|consen 324 PPKKILLLCGPPGLGKTTLAHVIAKQAG----Y-SVVEINASDERTAPMVKEKIENAVQNH 379 (877)
T ss_pred CccceEEeecCCCCChhHHHHHHHHhcC----c-eEEEecccccccHHHHHHHHHHHHhhc
Confidence 3457888899999999999999887321 2 245566777766666666665544433
No 491
>PRK14238 phosphate transporter ATP-binding protein; Provisional
Probab=94.26 E-value=0.036 Score=49.27 Aligned_cols=23 Identities=22% Similarity=0.302 Sum_probs=21.0
Q ss_pred cEEEEEEcCCCCChhHHHHHHhc
Q 047336 182 LSVVAILDSIGLDKTAFTAEAYN 204 (290)
Q Consensus 182 ~~Vi~IvGmgGiGKTTLa~~vy~ 204 (290)
=.+++|+|..|.|||||++.+..
T Consensus 50 Ge~~~I~G~nGsGKSTLl~~i~G 72 (271)
T PRK14238 50 NEVTAIIGPSGCGKSTYIKTLNR 72 (271)
T ss_pred CCEEEEECCCCCCHHHHHHHHHh
Confidence 46999999999999999999975
No 492
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=94.26 E-value=0.035 Score=49.21 Aligned_cols=23 Identities=22% Similarity=0.225 Sum_probs=21.0
Q ss_pred cEEEEEEcCCCCChhHHHHHHhc
Q 047336 182 LSVVAILDSIGLDKTAFTAEAYN 204 (290)
Q Consensus 182 ~~Vi~IvGmgGiGKTTLa~~vy~ 204 (290)
=.+++|+|..|.|||||++.+..
T Consensus 33 Ge~~~i~G~nGsGKSTLl~~l~G 55 (269)
T PRK11831 33 GKITAIMGPSGIGKTTLLRLIGG 55 (269)
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 45899999999999999999976
No 493
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=94.25 E-value=0.035 Score=51.33 Aligned_cols=54 Identities=9% Similarity=0.041 Sum_probs=35.3
Q ss_pred CCcEEEEEEcCCCCChhHHHHHHhccccccccCCeeEEEECC----CCC-CHHHHHHHHHHHhh
Q 047336 180 TQLSVVAILDSIGLDKTAFTAEAYNSSYVKHYFDYLAWIPAP----YQY-DPDQILDTVTWLSR 238 (290)
Q Consensus 180 ~~~~Vi~IvGmgGiGKTTLa~~vy~d~~v~~~F~~~~wV~vs----~~~-~~~~ll~~Il~~l~ 238 (290)
.-...++|||++|+|||.+|+.+++. ..-.| +-++.+ +.. ...+.++++.+...
T Consensus 146 k~PlgllL~GPPGcGKTllAraiA~e--lg~~~---i~vsa~eL~sk~vGEsEk~IR~~F~~A~ 204 (413)
T PLN00020 146 KVPLILGIWGGKGQGKSFQCELVFKK--MGIEP---IVMSAGELESENAGEPGKLIRQRYREAA 204 (413)
T ss_pred CCCeEEEeeCCCCCCHHHHHHHHHHH--cCCCe---EEEEHHHhhcCcCCcHHHHHHHHHHHHH
Confidence 45789999999999999999999994 33333 222221 111 44566666665443
No 494
>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional
Probab=94.25 E-value=0.034 Score=50.91 Aligned_cols=23 Identities=22% Similarity=0.200 Sum_probs=21.1
Q ss_pred cEEEEEEcCCCCChhHHHHHHhc
Q 047336 182 LSVVAILDSIGLDKTAFTAEAYN 204 (290)
Q Consensus 182 ~~Vi~IvGmgGiGKTTLa~~vy~ 204 (290)
-.+++|+|..|.|||||++.+..
T Consensus 33 Ge~~~lvG~sGsGKSTL~~~l~G 55 (326)
T PRK11022 33 GEVVGIVGESGSGKSVSSLAIMG 55 (326)
T ss_pred CCEEEEECCCCChHHHHHHHHHc
Confidence 46899999999999999999877
No 495
>PRK13974 thymidylate kinase; Provisional
Probab=94.24 E-value=0.11 Score=44.33 Aligned_cols=25 Identities=12% Similarity=-0.057 Sum_probs=22.1
Q ss_pred EEEEEEcCCCCChhHHHHHHhcccc
Q 047336 183 SVVAILDSIGLDKTAFTAEAYNSSY 207 (290)
Q Consensus 183 ~Vi~IvGmgGiGKTTLa~~vy~d~~ 207 (290)
.+|++.|..|+||||+++.+.....
T Consensus 4 ~~i~~eG~dGsGKsT~~~~l~~~l~ 28 (212)
T PRK13974 4 KFIVLEGIDGCGKTTQIDHLSKWLP 28 (212)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHH
Confidence 5899999999999999999998543
No 496
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional
Probab=94.24 E-value=0.037 Score=48.70 Aligned_cols=24 Identities=21% Similarity=0.189 Sum_probs=21.8
Q ss_pred cEEEEEEcCCCCChhHHHHHHhcc
Q 047336 182 LSVVAILDSIGLDKTAFTAEAYNS 205 (290)
Q Consensus 182 ~~Vi~IvGmgGiGKTTLa~~vy~d 205 (290)
-.+++|+|..|.|||||++.+..-
T Consensus 32 Ge~~~i~G~nGsGKSTLl~~l~Gl 55 (258)
T PRK11701 32 GEVLGIVGESGSGKTTLLNALSAR 55 (258)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 468999999999999999999873
No 497
>PRK07933 thymidylate kinase; Validated
Probab=94.23 E-value=0.081 Score=45.34 Aligned_cols=23 Identities=22% Similarity=0.192 Sum_probs=20.8
Q ss_pred EEEEEcCCCCChhHHHHHHhccc
Q 047336 184 VVAILDSIGLDKTAFTAEAYNSS 206 (290)
Q Consensus 184 Vi~IvGmgGiGKTTLa~~vy~d~ 206 (290)
.|+|-|+-|+||||+++.+.+..
T Consensus 2 ~IviEG~dGsGKST~~~~L~~~L 24 (213)
T PRK07933 2 LIAIEGVDGAGKRTLTEALRAAL 24 (213)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHH
Confidence 68999999999999999999843
No 498
>cd04114 Rab30 Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=94.23 E-value=0.044 Score=44.28 Aligned_cols=24 Identities=17% Similarity=0.264 Sum_probs=20.9
Q ss_pred CcEEEEEEcCCCCChhHHHHHHhc
Q 047336 181 QLSVVAILDSIGLDKTAFTAEAYN 204 (290)
Q Consensus 181 ~~~Vi~IvGmgGiGKTTLa~~vy~ 204 (290)
....|.++|.+|+|||||...+..
T Consensus 6 ~~~~v~v~G~~~~GKSsli~~l~~ 29 (169)
T cd04114 6 FLFKIVLIGNAGVGKTCLVRRFTQ 29 (169)
T ss_pred ceeEEEEECCCCCCHHHHHHHHHh
Confidence 357899999999999999988763
No 499
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=94.23 E-value=0.062 Score=50.66 Aligned_cols=47 Identities=13% Similarity=0.139 Sum_probs=35.3
Q ss_pred CCcccccchhHHHHHHHHh-------c--CC---C----CcEEEEEEcCCCCChhHHHHHHhc
Q 047336 158 NRNTVGLDDRMEELLDLLI-------E--GP---T----QLSVVAILDSIGLDKTAFTAEAYN 204 (290)
Q Consensus 158 ~~~~vG~e~~~~~L~~~L~-------~--~~---~----~~~Vi~IvGmgGiGKTTLa~~vy~ 204 (290)
+..++|.++.++.+...+. . .. . ....|-++|++|+|||+||+.+..
T Consensus 76 ~~~ViGQe~A~~~l~~av~~h~~~~~~~~~~~~~~~~~~~~~~iLL~GP~GsGKT~lAraLA~ 138 (413)
T TIGR00382 76 DEYVIGQEQAKKVLSVAVYNHYKRLNFEKNKKSDNGVELSKSNILLIGPTGSGKTLLAQTLAR 138 (413)
T ss_pred cceecCHHHHHHHHHHHHHHHHhhhccccccccccccccCCceEEEECCCCcCHHHHHHHHHH
Confidence 3458999999998876552 1 01 1 135788999999999999999986
No 500
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=94.23 E-value=0.09 Score=45.23 Aligned_cols=47 Identities=19% Similarity=0.105 Sum_probs=31.4
Q ss_pred HhcCCCCcEEEEEEcCCCCChhHHHHHHhccccccccCCeeEEEECCCC
Q 047336 175 LIEGPTQLSVVAILDSIGLDKTAFTAEAYNSSYVKHYFDYLAWIPAPYQ 223 (290)
Q Consensus 175 L~~~~~~~~Vi~IvGmgGiGKTTLa~~vy~d~~v~~~F~~~~wV~vs~~ 223 (290)
|..+=+.-.++.|.|.+|.|||||+..+... ..+ .=...+|++...+
T Consensus 13 l~GGi~~G~~~~i~G~~G~GKT~l~~~~~~~-~~~-~g~~~~~is~e~~ 59 (229)
T TIGR03881 13 LEGGIPRGFFVAVTGEPGTGKTIFCLHFAYK-GLR-DGDPVIYVTTEES 59 (229)
T ss_pred hcCCCcCCeEEEEECCCCCChHHHHHHHHHH-HHh-cCCeEEEEEccCC
Confidence 3334345689999999999999999875432 222 2345778876443
Done!