Query 047336
Match_columns 290
No_of_seqs 225 out of 1844
Neff 8.5
Searched_HMMs 29240
Date Mon Mar 25 17:46:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047336.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/047336hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3qfl_A MLA10; coiled-coil, (CC 99.8 9E-20 3.1E-24 140.3 6.2 82 3-97 1-84 (115)
2 2a5y_B CED-4; apoptosis; HET: 99.7 1.3E-17 4.3E-22 161.1 13.0 115 162-287 131-255 (549)
3 1vt4_I APAF-1 related killer D 99.5 3.5E-14 1.2E-18 143.3 8.3 77 161-238 130-207 (1221)
4 3sfz_A APAF-1, apoptotic pepti 99.5 6.9E-14 2.4E-18 145.5 10.9 116 157-286 122-247 (1249)
5 1z6t_A APAF-1, apoptotic prote 99.3 6.8E-12 2.3E-16 121.6 11.4 76 158-234 123-200 (591)
6 1w5s_A Origin recognition comp 98.6 1.1E-07 3.8E-12 87.4 9.4 80 159-240 22-114 (412)
7 2qby_B CDC6 homolog 3, cell di 98.5 4.8E-07 1.7E-11 82.3 9.4 79 159-239 20-109 (384)
8 1fnn_A CDC6P, cell division co 98.4 2.2E-06 7.4E-11 78.0 13.1 79 159-239 17-100 (389)
9 2v1u_A Cell division control p 98.4 8.6E-07 2.9E-11 80.4 10.3 79 159-239 19-105 (387)
10 2qby_A CDC6 homolog 1, cell di 98.4 4.2E-07 1.4E-11 82.4 6.7 79 158-238 19-102 (386)
11 2qen_A Walker-type ATPase; unk 98.2 1E-06 3.6E-11 78.7 6.0 71 157-238 10-86 (350)
12 2fna_A Conserved hypothetical 98.1 4.8E-06 1.7E-10 74.4 7.1 70 157-237 11-85 (357)
13 1jbk_A CLPB protein; beta barr 97.8 1.6E-05 5.6E-10 64.1 5.2 45 159-205 22-66 (195)
14 2chg_A Replication factor C sm 97.8 4.2E-05 1.4E-09 63.2 7.4 69 159-230 17-86 (226)
15 2p65_A Hypothetical protein PF 97.7 2.6E-05 9.1E-10 62.8 4.6 44 159-204 22-65 (187)
16 3te6_A Regulatory protein SIR3 97.7 4.4E-05 1.5E-09 68.2 5.5 80 161-240 22-108 (318)
17 1njg_A DNA polymerase III subu 97.6 4.9E-05 1.7E-09 63.5 5.3 46 159-205 23-68 (250)
18 1sxj_B Activator 1 37 kDa subu 97.4 0.00015 5.2E-09 63.8 5.8 75 159-238 21-97 (323)
19 3n70_A Transport activator; si 97.3 0.00016 5.5E-09 56.7 4.0 45 160-205 2-47 (145)
20 1iqp_A RFCS; clamp loader, ext 97.3 0.00023 7.8E-09 62.8 5.2 45 159-205 25-69 (327)
21 3h4m_A Proteasome-activating n 97.1 0.00035 1.2E-08 60.7 4.6 48 158-205 16-74 (285)
22 2w58_A DNAI, primosome compone 97.1 0.0005 1.7E-08 56.6 5.4 52 167-220 37-90 (202)
23 3pfi_A Holliday junction ATP-d 97.1 0.00029 9.8E-09 62.9 3.9 46 159-204 29-77 (338)
24 3bos_A Putative DNA replicatio 97.1 0.00067 2.3E-08 56.8 5.6 58 160-221 29-89 (242)
25 1hqc_A RUVB; extended AAA-ATPa 97.1 0.00065 2.2E-08 60.0 5.7 46 159-204 12-60 (324)
26 3c8u_A Fructokinase; YP_612366 97.0 0.00049 1.7E-08 57.2 4.5 37 168-204 8-44 (208)
27 3cf0_A Transitional endoplasmi 97.0 0.00051 1.7E-08 60.6 4.8 47 159-205 15-72 (301)
28 3co5_A Putative two-component 97.0 0.00019 6.5E-09 56.2 1.8 46 159-205 4-50 (143)
29 1sxj_D Activator 1 41 kDa subu 97.0 0.00043 1.5E-08 61.8 4.3 45 159-205 37-81 (353)
30 3ec2_A DNA replication protein 97.0 0.00057 2E-08 55.2 4.5 25 181-205 37-61 (180)
31 3pxg_A Negative regulator of g 97.0 0.00064 2.2E-08 63.9 5.2 44 159-204 180-223 (468)
32 3syl_A Protein CBBX; photosynt 97.0 0.00048 1.6E-08 60.5 4.1 45 160-204 32-89 (309)
33 2qz4_A Paraplegin; AAA+, SPG7, 97.0 0.00046 1.6E-08 59.0 3.8 46 159-204 6-61 (262)
34 1rz3_A Hypothetical protein rb 97.0 0.00084 2.9E-08 55.5 5.1 41 164-204 3-44 (201)
35 3b9p_A CG5977-PA, isoform A; A 96.9 0.00058 2E-08 59.7 3.9 47 159-205 21-77 (297)
36 3eie_A Vacuolar protein sortin 96.9 0.00064 2.2E-08 60.5 4.2 47 159-205 18-74 (322)
37 3uk6_A RUVB-like 2; hexameric 96.9 0.00092 3.2E-08 60.2 5.2 47 159-205 44-93 (368)
38 1in4_A RUVB, holliday junction 96.9 0.00065 2.2E-08 60.9 4.0 46 159-204 25-73 (334)
39 3lw7_A Adenylate kinase relate 96.8 0.00052 1.8E-08 54.5 2.9 20 183-202 2-21 (179)
40 2cvh_A DNA repair and recombin 96.8 0.0065 2.2E-07 50.1 9.8 47 180-231 18-64 (220)
41 1jr3_A DNA polymerase III subu 96.8 0.0012 4.1E-08 59.4 5.6 46 159-205 16-61 (373)
42 3pvs_A Replication-associated 96.8 0.00074 2.5E-08 63.1 4.2 44 159-204 26-72 (447)
43 1sxj_A Activator 1 95 kDa subu 96.8 0.0011 3.7E-08 63.1 5.3 47 159-205 39-100 (516)
44 1odf_A YGR205W, hypothetical 3 96.8 0.0012 4.3E-08 58.0 5.3 38 167-204 12-53 (290)
45 3d8b_A Fidgetin-like protein 1 96.8 0.00074 2.5E-08 61.1 3.9 46 159-204 84-139 (357)
46 2chq_A Replication factor C sm 96.8 0.00089 3.1E-08 58.7 4.3 44 159-204 17-60 (319)
47 2bjv_A PSP operon transcriptio 96.8 0.0014 4.7E-08 56.4 5.3 47 159-205 6-52 (265)
48 1lv7_A FTSH; alpha/beta domain 96.8 0.001 3.4E-08 57.0 4.4 47 159-205 12-68 (257)
49 1xwi_A SKD1 protein; VPS4B, AA 96.7 0.0015 5.1E-08 58.2 5.3 47 159-205 12-68 (322)
50 1ofh_A ATP-dependent HSL prote 96.7 0.00085 2.9E-08 58.7 3.5 46 159-204 15-72 (310)
51 1sxj_E Activator 1 40 kDa subu 96.7 0.00085 2.9E-08 60.1 3.1 44 159-204 14-58 (354)
52 1zp6_A Hypothetical protein AT 96.6 0.001 3.5E-08 54.0 3.1 24 182-205 9-32 (191)
53 3kb2_A SPBC2 prophage-derived 96.6 0.001 3.4E-08 52.9 3.0 22 183-204 2-23 (173)
54 1sxj_C Activator 1 40 kDa subu 96.6 0.0017 5.8E-08 58.1 4.6 44 159-204 25-68 (340)
55 4fcw_A Chaperone protein CLPB; 96.6 0.0013 4.5E-08 57.6 3.8 45 160-204 18-69 (311)
56 2r62_A Cell division protease 96.6 0.0014 4.8E-08 56.3 3.7 47 159-205 11-67 (268)
57 3pxi_A Negative regulator of g 96.5 0.002 7E-08 64.0 5.2 44 159-204 180-223 (758)
58 1ojl_A Transcriptional regulat 96.5 0.0017 5.6E-08 57.5 4.1 46 159-204 2-47 (304)
59 3hws_A ATP-dependent CLP prote 96.5 0.0018 6.1E-08 58.5 4.4 45 160-204 16-73 (363)
60 3vaa_A Shikimate kinase, SK; s 96.5 0.0014 4.8E-08 53.9 3.1 23 182-204 25-47 (199)
61 1kag_A SKI, shikimate kinase I 96.5 0.0011 3.8E-08 52.9 2.3 22 183-204 5-26 (173)
62 1ly1_A Polynucleotide kinase; 96.5 0.0016 5.4E-08 52.1 3.3 22 183-204 3-24 (181)
63 1kgd_A CASK, peripheral plasma 96.5 0.0014 4.7E-08 53.1 2.9 23 182-204 5-27 (180)
64 2qp9_X Vacuolar protein sortin 96.4 0.0018 6.1E-08 58.5 3.9 47 159-205 51-107 (355)
65 1qvr_A CLPB protein; coiled co 96.4 0.0017 6E-08 65.4 4.1 44 159-204 170-213 (854)
66 1qhx_A CPT, protein (chloramph 96.4 0.0016 5.4E-08 52.2 2.9 22 183-204 4-25 (178)
67 4gp7_A Metallophosphoesterase; 96.4 0.0018 6.1E-08 52.1 3.2 23 182-204 9-31 (171)
68 3vfd_A Spastin; ATPase, microt 96.4 0.002 6.8E-08 58.9 3.8 46 159-204 115-170 (389)
69 3uie_A Adenylyl-sulfate kinase 96.4 0.0021 7.2E-08 52.9 3.6 25 180-204 23-47 (200)
70 3tr0_A Guanylate kinase, GMP k 96.4 0.0017 5.9E-08 53.2 3.0 22 183-204 8-29 (205)
71 3asz_A Uridine kinase; cytidin 96.4 0.002 6.8E-08 53.3 3.4 24 181-204 5-28 (211)
72 1r6b_X CLPA protein; AAA+, N-t 96.4 0.003 1E-07 62.7 5.2 44 159-204 186-229 (758)
73 1knq_A Gluconate kinase; ALFA/ 96.3 0.0026 8.9E-08 50.9 3.9 24 181-204 7-30 (175)
74 2x8a_A Nuclear valosin-contain 96.3 0.0024 8E-08 55.6 3.9 46 159-205 10-67 (274)
75 2bdt_A BH3686; alpha-beta prot 96.3 0.002 7E-08 52.3 3.3 22 183-204 3-24 (189)
76 2ga8_A Hypothetical 39.9 kDa p 96.3 0.0036 1.2E-07 56.5 5.1 43 162-204 2-46 (359)
77 3u61_B DNA polymerase accessor 96.3 0.0035 1.2E-07 55.4 5.0 45 159-204 26-70 (324)
78 1ixz_A ATP-dependent metallopr 96.3 0.0035 1.2E-07 53.5 4.8 46 159-205 16-72 (254)
79 1uf9_A TT1252 protein; P-loop, 96.3 0.0024 8.1E-08 52.2 3.5 25 180-204 6-30 (203)
80 1d2n_A N-ethylmaleimide-sensit 96.3 0.0052 1.8E-07 53.0 5.8 47 159-205 33-87 (272)
81 1cke_A CK, MSSA, protein (cyti 96.3 0.002 6.8E-08 53.8 3.0 23 182-204 5-27 (227)
82 2zan_A Vacuolar protein sortin 96.3 0.0031 1.1E-07 58.7 4.6 47 159-205 134-190 (444)
83 3trf_A Shikimate kinase, SK; a 96.3 0.002 6.9E-08 52.0 2.9 23 182-204 5-27 (185)
84 1ye8_A Protein THEP1, hypothet 96.3 0.0021 7.1E-08 52.3 3.0 22 184-205 2-23 (178)
85 1nks_A Adenylate kinase; therm 96.3 0.0021 7.3E-08 51.9 3.1 22 183-204 2-23 (194)
86 1l8q_A Chromosomal replication 96.3 0.0036 1.2E-07 55.5 4.7 37 168-204 23-59 (324)
87 2qt1_A Nicotinamide riboside k 96.3 0.0025 8.6E-08 52.6 3.5 25 180-204 19-43 (207)
88 2c9o_A RUVB-like 1; hexameric 96.3 0.004 1.4E-07 58.2 5.3 47 159-205 37-86 (456)
89 2jaq_A Deoxyguanosine kinase; 96.3 0.002 6.9E-08 52.6 2.9 21 184-204 2-22 (205)
90 1uj2_A Uridine-cytidine kinase 96.2 0.0025 8.6E-08 54.5 3.5 25 180-204 20-44 (252)
91 2rhm_A Putative kinase; P-loop 96.2 0.0027 9.2E-08 51.4 3.5 23 182-204 5-27 (193)
92 2if2_A Dephospho-COA kinase; a 96.2 0.0022 7.4E-08 52.7 2.9 22 183-204 2-23 (204)
93 1zuh_A Shikimate kinase; alpha 96.2 0.0023 7.8E-08 50.9 2.9 25 180-204 5-29 (168)
94 2j41_A Guanylate kinase; GMP, 96.2 0.0023 8E-08 52.4 3.0 23 182-204 6-28 (207)
95 1ypw_A Transitional endoplasmi 96.2 0.0028 9.7E-08 63.5 4.2 46 159-204 204-260 (806)
96 2kjq_A DNAA-related protein; s 96.2 0.0021 7.2E-08 50.7 2.5 25 181-205 35-59 (149)
97 3a00_A Guanylate kinase, GMP k 96.2 0.0019 6.7E-08 52.5 2.4 22 183-204 2-23 (186)
98 1jjv_A Dephospho-COA kinase; P 96.2 0.0027 9.1E-08 52.3 3.3 22 183-204 3-24 (206)
99 1kht_A Adenylate kinase; phosp 96.2 0.0024 8.2E-08 51.6 2.9 22 183-204 4-25 (192)
100 1iy2_A ATP-dependent metallopr 96.2 0.0034 1.2E-07 54.4 4.0 47 158-205 39-96 (278)
101 3t61_A Gluconokinase; PSI-biol 96.2 0.0019 6.3E-08 53.2 2.2 23 182-204 18-40 (202)
102 4eun_A Thermoresistant glucoki 96.2 0.0027 9.2E-08 52.2 3.1 24 181-204 28-51 (200)
103 2hf9_A Probable hydrogenase ni 96.2 0.005 1.7E-07 51.2 4.8 26 180-205 36-61 (226)
104 2bbw_A Adenylate kinase 4, AK4 96.1 0.0027 9.3E-08 54.0 3.1 23 182-204 27-49 (246)
105 3e70_C DPA, signal recognition 96.1 0.0047 1.6E-07 55.3 4.6 25 180-204 127-151 (328)
106 3hu3_A Transitional endoplasmi 96.1 0.0035 1.2E-07 59.2 4.0 46 159-204 204-260 (489)
107 1tev_A UMP-CMP kinase; ploop, 96.1 0.0033 1.1E-07 50.8 3.3 23 182-204 3-25 (196)
108 1lvg_A Guanylate kinase, GMP k 96.1 0.0023 7.8E-08 52.8 2.3 22 183-204 5-26 (198)
109 2c95_A Adenylate kinase 1; tra 96.1 0.0031 1.1E-07 51.2 3.1 23 182-204 9-31 (196)
110 3tau_A Guanylate kinase, GMP k 96.1 0.0032 1.1E-07 52.3 3.2 24 181-204 7-30 (208)
111 1ukz_A Uridylate kinase; trans 96.1 0.0036 1.2E-07 51.4 3.5 25 180-204 13-37 (203)
112 1um8_A ATP-dependent CLP prote 96.1 0.005 1.7E-07 55.8 4.7 46 159-204 21-94 (376)
113 3iij_A Coilin-interacting nucl 96.1 0.0026 9E-08 51.2 2.5 23 182-204 11-33 (180)
114 3sr0_A Adenylate kinase; phosp 96.0 0.012 4E-07 49.0 6.5 21 184-204 2-22 (206)
115 2wsm_A Hydrogenase expression/ 96.0 0.0039 1.3E-07 51.7 3.5 39 164-204 14-52 (221)
116 1y63_A LMAJ004144AAA protein; 96.0 0.0036 1.2E-07 50.7 3.3 24 181-204 9-32 (184)
117 3cm0_A Adenylate kinase; ATP-b 96.0 0.0036 1.2E-07 50.5 3.2 23 182-204 4-26 (186)
118 4a74_A DNA repair and recombin 96.0 0.012 4E-07 48.9 6.5 47 181-227 24-74 (231)
119 3aez_A Pantothenate kinase; tr 96.0 0.0039 1.3E-07 55.4 3.6 25 180-204 88-112 (312)
120 1via_A Shikimate kinase; struc 96.0 0.0026 8.9E-08 51.0 2.3 22 183-204 5-26 (175)
121 1znw_A Guanylate kinase, GMP k 96.0 0.0034 1.1E-07 52.0 3.1 23 182-204 20-42 (207)
122 1n0w_A DNA repair protein RAD5 96.0 0.013 4.5E-07 49.0 6.8 49 181-229 23-75 (243)
123 2iyv_A Shikimate kinase, SK; t 96.0 0.0025 8.4E-08 51.5 2.1 22 183-204 3-24 (184)
124 2p5t_B PEZT; postsegregational 96.0 0.0056 1.9E-07 52.4 4.5 40 165-204 12-54 (253)
125 3tlx_A Adenylate kinase 2; str 96.0 0.0057 2E-07 52.1 4.5 38 167-204 14-51 (243)
126 2jeo_A Uridine-cytidine kinase 96.0 0.0042 1.4E-07 52.9 3.6 24 181-204 24-47 (245)
127 4b4t_K 26S protease regulatory 96.0 0.0054 1.8E-07 56.9 4.6 46 159-204 172-228 (428)
128 2yvu_A Probable adenylyl-sulfa 96.0 0.0038 1.3E-07 50.5 3.2 24 181-204 12-35 (186)
129 2qor_A Guanylate kinase; phosp 96.0 0.0027 9.3E-08 52.4 2.3 24 181-204 11-34 (204)
130 3p32_A Probable GTPase RV1496/ 96.0 0.0073 2.5E-07 54.5 5.3 37 168-204 65-101 (355)
131 2plr_A DTMP kinase, probable t 96.0 0.004 1.4E-07 51.1 3.3 23 182-204 4-26 (213)
132 2ze6_A Isopentenyl transferase 96.0 0.0038 1.3E-07 53.6 3.3 22 183-204 2-23 (253)
133 4e22_A Cytidylate kinase; P-lo 96.0 0.0036 1.2E-07 53.6 3.0 22 182-203 27-48 (252)
134 3fwy_A Light-independent proto 96.0 0.0041 1.4E-07 55.3 3.5 24 180-203 46-69 (314)
135 2ce7_A Cell division protein F 95.9 0.0061 2.1E-07 57.3 4.7 47 159-205 16-72 (476)
136 3a4m_A L-seryl-tRNA(SEC) kinas 95.9 0.0043 1.5E-07 53.4 3.5 23 182-204 4-26 (260)
137 2bwj_A Adenylate kinase 5; pho 95.9 0.0036 1.2E-07 50.9 2.8 23 182-204 12-34 (199)
138 1qf9_A UMP/CMP kinase, protein 95.9 0.0042 1.4E-07 50.1 3.2 23 182-204 6-28 (194)
139 1xjc_A MOBB protein homolog; s 95.9 0.0039 1.3E-07 50.4 2.9 24 181-204 3-26 (169)
140 2vli_A Antibiotic resistance p 95.9 0.0032 1.1E-07 50.6 2.4 23 182-204 5-27 (183)
141 2z0h_A DTMP kinase, thymidylat 95.9 0.01 3.5E-07 48.1 5.5 21 184-204 2-22 (197)
142 1ex7_A Guanylate kinase; subst 95.9 0.0035 1.2E-07 51.4 2.6 21 184-204 3-23 (186)
143 2r44_A Uncharacterized protein 95.9 0.0046 1.6E-07 54.9 3.5 42 159-204 27-68 (331)
144 2pbr_A DTMP kinase, thymidylat 95.9 0.004 1.4E-07 50.4 2.9 21 184-204 2-22 (195)
145 1e6c_A Shikimate kinase; phosp 95.9 0.0033 1.1E-07 50.0 2.3 22 183-204 3-24 (173)
146 2pt5_A Shikimate kinase, SK; a 95.9 0.0041 1.4E-07 49.2 2.9 21 184-204 2-22 (168)
147 4b4t_M 26S protease regulatory 95.9 0.006 2E-07 56.7 4.3 46 159-204 181-237 (434)
148 4b4t_L 26S protease subunit RP 95.9 0.0067 2.3E-07 56.4 4.6 46 159-204 181-237 (437)
149 1zu4_A FTSY; GTPase, signal re 95.9 0.0095 3.3E-07 53.1 5.5 24 181-204 104-127 (320)
150 1gvn_B Zeta; postsegregational 95.9 0.0085 2.9E-07 52.4 5.1 25 180-204 31-55 (287)
151 1z6g_A Guanylate kinase; struc 95.9 0.0033 1.1E-07 52.6 2.3 23 182-204 23-45 (218)
152 3tqc_A Pantothenate kinase; bi 95.9 0.0074 2.5E-07 53.8 4.7 25 180-204 90-114 (321)
153 2cdn_A Adenylate kinase; phosp 95.9 0.0051 1.7E-07 50.4 3.4 24 181-204 19-42 (201)
154 1htw_A HI0065; nucleotide-bind 95.8 0.0055 1.9E-07 48.8 3.3 25 180-204 31-55 (158)
155 2z4s_A Chromosomal replication 95.8 0.0049 1.7E-07 57.4 3.5 29 182-212 130-158 (440)
156 2grj_A Dephospho-COA kinase; T 95.8 0.0052 1.8E-07 50.6 3.3 25 180-204 10-34 (192)
157 1rj9_A FTSY, signal recognitio 95.8 0.0049 1.7E-07 54.5 3.2 24 181-204 101-124 (304)
158 1gtv_A TMK, thymidylate kinase 95.8 0.0024 8.2E-08 52.7 1.1 21 184-204 2-22 (214)
159 1g8p_A Magnesium-chelatase 38 95.8 0.006 2E-07 54.2 3.8 45 159-205 24-68 (350)
160 3nbx_X ATPase RAVA; AAA+ ATPas 95.7 0.01 3.5E-07 56.2 5.4 43 159-205 22-64 (500)
161 1vht_A Dephospho-COA kinase; s 95.7 0.0063 2.1E-07 50.6 3.6 23 182-204 4-26 (218)
162 2f6r_A COA synthase, bifunctio 95.7 0.0061 2.1E-07 53.1 3.6 24 180-203 73-96 (281)
163 1nn5_A Similar to deoxythymidy 95.7 0.0055 1.9E-07 50.4 3.2 23 182-204 9-31 (215)
164 2ehv_A Hypothetical protein PH 95.7 0.0053 1.8E-07 51.7 3.1 23 181-203 29-51 (251)
165 4b4t_J 26S protease regulatory 95.7 0.0065 2.2E-07 55.8 3.8 46 159-204 148-204 (405)
166 2i3b_A HCR-ntpase, human cance 95.7 0.0046 1.6E-07 50.8 2.5 21 184-204 3-23 (189)
167 3t15_A Ribulose bisphosphate c 95.7 0.0051 1.7E-07 54.0 2.9 25 181-205 35-59 (293)
168 2wwf_A Thymidilate kinase, put 95.7 0.0054 1.8E-07 50.5 2.8 23 182-204 10-32 (212)
169 3b85_A Phosphate starvation-in 95.7 0.0058 2E-07 51.0 3.0 22 183-204 23-44 (208)
170 2onk_A Molybdate/tungstate ABC 95.7 0.0059 2E-07 52.1 3.1 24 180-204 23-46 (240)
171 3hjn_A DTMP kinase, thymidylat 95.7 0.022 7.6E-07 46.9 6.6 49 184-234 2-50 (197)
172 3tif_A Uncharacterized ABC tra 95.7 0.0059 2E-07 51.9 3.1 23 182-204 31-53 (235)
173 1zd8_A GTP:AMP phosphotransfer 95.6 0.0056 1.9E-07 51.3 2.9 23 182-204 7-29 (227)
174 2pez_A Bifunctional 3'-phospho 95.6 0.0073 2.5E-07 48.5 3.5 23 182-204 5-27 (179)
175 3ney_A 55 kDa erythrocyte memb 95.6 0.0057 2E-07 50.6 2.8 24 181-204 18-41 (197)
176 2pcj_A ABC transporter, lipopr 95.6 0.0059 2E-07 51.5 3.0 23 182-204 30-52 (224)
177 1aky_A Adenylate kinase; ATP:A 95.6 0.0063 2.1E-07 50.7 3.1 23 182-204 4-26 (220)
178 1s96_A Guanylate kinase, GMP k 95.6 0.006 2E-07 51.3 3.0 24 181-204 15-38 (219)
179 2v54_A DTMP kinase, thymidylat 95.6 0.006 2E-07 49.9 2.9 23 182-204 4-26 (204)
180 4b4t_H 26S protease regulatory 95.6 0.0082 2.8E-07 56.0 4.1 46 159-204 209-265 (467)
181 3umf_A Adenylate kinase; rossm 95.6 0.0074 2.5E-07 50.7 3.5 26 180-205 27-52 (217)
182 3b9q_A Chloroplast SRP recepto 95.6 0.0072 2.5E-07 53.4 3.6 24 181-204 99-122 (302)
183 2f1r_A Molybdopterin-guanine d 95.6 0.0032 1.1E-07 50.9 1.2 23 182-204 2-24 (171)
184 3lnc_A Guanylate kinase, GMP k 95.6 0.004 1.4E-07 52.4 1.7 22 182-203 27-48 (231)
185 1sq5_A Pantothenate kinase; P- 95.6 0.0075 2.6E-07 53.3 3.5 25 180-204 78-102 (308)
186 1m7g_A Adenylylsulfate kinase; 95.5 0.0081 2.8E-07 49.7 3.5 24 181-204 24-47 (211)
187 3fb4_A Adenylate kinase; psych 95.5 0.0069 2.3E-07 50.1 3.1 21 184-204 2-22 (216)
188 1g41_A Heat shock protein HSLU 95.5 0.01 3.4E-07 55.3 4.4 46 159-204 15-72 (444)
189 2cbz_A Multidrug resistance-as 95.5 0.0069 2.4E-07 51.5 3.1 23 182-204 31-53 (237)
190 2yhs_A FTSY, cell division pro 95.5 0.013 4.4E-07 55.3 5.1 24 181-204 292-315 (503)
191 1b0u_A Histidine permease; ABC 95.5 0.0071 2.4E-07 52.2 3.1 23 182-204 32-54 (262)
192 2px0_A Flagellar biosynthesis 95.5 0.007 2.4E-07 53.3 3.1 24 181-204 104-127 (296)
193 1ji0_A ABC transporter; ATP bi 95.5 0.0073 2.5E-07 51.4 3.1 23 182-204 32-54 (240)
194 3ake_A Cytidylate kinase; CMP 95.5 0.0075 2.6E-07 49.3 3.1 21 184-204 4-24 (208)
195 2dhr_A FTSH; AAA+ protein, hex 95.5 0.014 5E-07 55.1 5.3 48 158-205 30-87 (499)
196 2qgz_A Helicase loader, putati 95.5 0.01 3.6E-07 52.4 4.1 52 167-220 136-189 (308)
197 2xxa_A Signal recognition part 95.5 0.014 4.7E-07 54.3 5.0 38 167-204 78-122 (433)
198 3dl0_A Adenylate kinase; phosp 95.4 0.0077 2.6E-07 49.9 3.1 21 184-204 2-22 (216)
199 3gfo_A Cobalt import ATP-bindi 95.4 0.0075 2.6E-07 52.6 3.1 23 182-204 34-56 (275)
200 2vhj_A Ntpase P4, P4; non- hyd 95.4 0.012 4.1E-07 52.4 4.4 53 182-239 123-182 (331)
201 1g6h_A High-affinity branched- 95.4 0.0077 2.6E-07 51.8 3.1 23 182-204 33-55 (257)
202 1mv5_A LMRA, multidrug resista 95.4 0.0084 2.9E-07 51.1 3.3 24 181-204 27-50 (243)
203 1v5w_A DMC1, meiotic recombina 95.4 0.041 1.4E-06 49.3 8.0 54 178-231 118-175 (343)
204 1np6_A Molybdopterin-guanine d 95.4 0.0077 2.6E-07 48.8 2.9 23 182-204 6-28 (174)
205 3m6a_A ATP-dependent protease 95.4 0.013 4.5E-07 56.0 5.0 46 159-204 81-130 (543)
206 2d2e_A SUFC protein; ABC-ATPas 95.4 0.008 2.7E-07 51.5 3.1 23 182-204 29-51 (250)
207 2pze_A Cystic fibrosis transme 95.4 0.0081 2.8E-07 50.8 3.1 23 182-204 34-56 (229)
208 1cr0_A DNA primase/helicase; R 95.4 0.024 8.1E-07 49.4 6.2 53 181-237 34-87 (296)
209 1zak_A Adenylate kinase; ATP:A 95.4 0.007 2.4E-07 50.5 2.6 23 182-204 5-27 (222)
210 2olj_A Amino acid ABC transpor 95.4 0.0083 2.8E-07 51.9 3.1 24 181-204 49-72 (263)
211 3nwj_A ATSK2; P loop, shikimat 95.4 0.0064 2.2E-07 52.3 2.3 23 182-204 48-70 (250)
212 2ff7_A Alpha-hemolysin translo 95.4 0.0086 2.9E-07 51.3 3.1 23 182-204 35-57 (247)
213 1yrb_A ATP(GTP)binding protein 95.3 0.0098 3.4E-07 50.6 3.5 25 180-204 12-36 (262)
214 1sgw_A Putative ABC transporte 95.3 0.0072 2.5E-07 50.6 2.5 23 182-204 35-57 (214)
215 1vma_A Cell division protein F 95.3 0.01 3.5E-07 52.5 3.6 24 181-204 103-126 (306)
216 2z43_A DNA repair and recombin 95.3 0.029 9.8E-07 49.8 6.5 51 181-231 106-160 (324)
217 4g1u_C Hemin import ATP-bindin 95.3 0.0086 3E-07 51.9 3.0 23 182-204 37-59 (266)
218 1vpl_A ABC transporter, ATP-bi 95.3 0.0089 3E-07 51.5 3.1 23 182-204 41-63 (256)
219 2zu0_C Probable ATP-dependent 95.3 0.0089 3E-07 51.8 3.1 23 182-204 46-68 (267)
220 2ixe_A Antigen peptide transpo 95.3 0.0089 3E-07 51.9 3.1 23 182-204 45-67 (271)
221 4eaq_A DTMP kinase, thymidylat 95.3 0.018 6.1E-07 48.6 4.9 25 181-205 25-49 (229)
222 1pzn_A RAD51, DNA repair and r 95.3 0.033 1.1E-06 50.1 7.0 49 180-228 129-181 (349)
223 2ghi_A Transport protein; mult 95.3 0.009 3.1E-07 51.5 3.1 23 182-204 46-68 (260)
224 1j8m_F SRP54, signal recogniti 95.3 0.017 5.8E-07 50.8 4.9 23 182-204 98-120 (297)
225 2dyk_A GTP-binding protein; GT 95.3 0.011 3.9E-07 45.7 3.4 23 183-205 2-24 (161)
226 2og2_A Putative signal recogni 95.3 0.011 3.6E-07 53.7 3.5 24 181-204 156-179 (359)
227 1fzq_A ADP-ribosylation factor 95.3 0.015 5.1E-07 46.6 4.1 26 180-205 14-39 (181)
228 1oix_A RAS-related protein RAB 95.2 0.0093 3.2E-07 48.4 2.9 24 182-205 29-52 (191)
229 2yz2_A Putative ABC transporte 95.2 0.0096 3.3E-07 51.5 3.1 23 182-204 33-55 (266)
230 3kl4_A SRP54, signal recogniti 95.2 0.016 5.3E-07 53.8 4.6 24 181-204 96-119 (433)
231 3be4_A Adenylate kinase; malar 95.2 0.0084 2.9E-07 49.9 2.6 23 182-204 5-27 (217)
232 2qi9_C Vitamin B12 import ATP- 95.2 0.0099 3.4E-07 51.0 3.1 23 182-204 26-48 (249)
233 2nq2_C Hypothetical ABC transp 95.2 0.01 3.5E-07 51.0 3.1 23 182-204 31-53 (253)
234 3pxi_A Negative regulator of g 95.2 0.019 6.5E-07 57.0 5.5 46 159-204 491-543 (758)
235 2ihy_A ABC transporter, ATP-bi 95.2 0.01 3.5E-07 51.8 3.1 23 182-204 47-69 (279)
236 3r20_A Cytidylate kinase; stru 95.2 0.01 3.5E-07 50.4 3.0 23 182-204 9-31 (233)
237 3cf2_A TER ATPase, transitiona 95.2 0.029 9.9E-07 56.0 6.7 76 159-239 204-295 (806)
238 4b4t_I 26S protease regulatory 95.2 0.016 5.6E-07 53.5 4.5 46 159-204 182-238 (437)
239 2wji_A Ferrous iron transport 95.2 0.013 4.4E-07 46.2 3.4 23 183-205 4-26 (165)
240 2vp4_A Deoxynucleoside kinase; 95.2 0.0092 3.2E-07 50.2 2.6 25 180-204 18-42 (230)
241 1svm_A Large T antigen; AAA+ f 95.1 0.019 6.4E-07 52.4 4.8 35 170-204 157-191 (377)
242 2v3c_C SRP54, signal recogniti 95.1 0.014 4.9E-07 54.1 4.1 38 167-204 77-121 (432)
243 2i1q_A DNA repair and recombin 95.1 0.039 1.3E-06 48.8 6.8 52 180-231 96-161 (322)
244 2zej_A Dardarin, leucine-rich 95.1 0.011 3.7E-07 47.6 2.9 21 184-204 4-24 (184)
245 2w0m_A SSO2452; RECA, SSPF, un 95.1 0.011 3.7E-07 49.0 2.9 23 182-204 23-45 (235)
246 1e4v_A Adenylate kinase; trans 95.1 0.011 3.9E-07 48.9 3.0 21 184-204 2-22 (214)
247 1nij_A Hypothetical protein YJ 95.1 0.012 4.1E-07 52.2 3.2 25 181-205 3-27 (318)
248 2f9l_A RAB11B, member RAS onco 95.0 0.012 4.1E-07 47.9 3.0 24 182-205 5-28 (199)
249 1q3t_A Cytidylate kinase; nucl 95.0 0.013 4.5E-07 49.4 3.3 25 180-204 14-38 (236)
250 2xb4_A Adenylate kinase; ATP-b 95.0 0.012 4.1E-07 49.2 3.0 21 184-204 2-22 (223)
251 3bh0_A DNAB-like replicative h 95.0 0.062 2.1E-06 47.5 7.8 56 177-236 63-118 (315)
252 1a7j_A Phosphoribulokinase; tr 95.0 0.0087 3E-07 52.5 2.1 24 181-204 4-27 (290)
253 2eyu_A Twitching motility prot 95.0 0.014 4.7E-07 50.4 3.3 24 181-204 24-47 (261)
254 3k1j_A LON protease, ATP-depen 95.0 0.032 1.1E-06 54.0 6.3 42 159-204 41-82 (604)
255 2v9p_A Replication protein E1; 95.0 0.013 4.4E-07 51.9 3.2 25 180-204 124-148 (305)
256 3hr8_A Protein RECA; alpha and 95.0 0.034 1.2E-06 50.2 5.9 45 180-226 59-103 (356)
257 2ce2_X GTPase HRAS; signaling 95.0 0.013 4.4E-07 45.3 2.8 22 184-205 5-26 (166)
258 2wjg_A FEOB, ferrous iron tran 94.9 0.016 5.5E-07 46.3 3.5 24 182-205 7-30 (188)
259 3sop_A Neuronal-specific septi 94.9 0.012 4.3E-07 50.9 2.9 21 184-204 4-24 (270)
260 2ged_A SR-beta, signal recogni 94.9 0.024 8.1E-07 45.5 4.4 26 180-205 46-71 (193)
261 3d3q_A TRNA delta(2)-isopenten 94.9 0.014 4.8E-07 52.4 3.3 22 183-204 8-29 (340)
262 1ak2_A Adenylate kinase isoenz 94.9 0.015 5E-07 49.0 3.3 23 182-204 16-38 (233)
263 3lda_A DNA repair protein RAD5 94.9 0.059 2E-06 49.4 7.5 50 180-229 176-229 (400)
264 2pjz_A Hypothetical protein ST 94.9 0.014 4.7E-07 50.5 3.1 22 183-204 31-52 (263)
265 1ltq_A Polynucleotide kinase; 94.9 0.015 5.1E-07 50.7 3.3 22 183-204 3-24 (301)
266 2p67_A LAO/AO transport system 94.8 0.03 1E-06 50.1 5.2 35 170-204 44-78 (341)
267 2nzj_A GTP-binding protein REM 94.8 0.015 5.3E-07 45.6 3.0 24 182-205 4-27 (175)
268 3end_A Light-independent proto 94.8 0.017 5.7E-07 50.7 3.5 25 180-204 39-63 (307)
269 2zr9_A Protein RECA, recombina 94.8 0.023 7.9E-07 51.2 4.4 45 180-226 59-103 (349)
270 2j37_W Signal recognition part 94.8 0.025 8.5E-07 53.5 4.8 37 168-204 80-123 (504)
271 2qm8_A GTPase/ATPase; G protei 94.8 0.029 1E-06 50.2 5.0 34 170-203 43-76 (337)
272 3dm5_A SRP54, signal recogniti 94.8 0.028 9.6E-07 52.2 4.9 24 181-204 99-122 (443)
273 1u8z_A RAS-related protein RAL 94.7 0.016 5.6E-07 44.9 2.9 24 182-205 4-27 (168)
274 1z2a_A RAS-related protein RAB 94.7 0.02 6.8E-07 44.5 3.4 24 182-205 5-28 (168)
275 1nlf_A Regulatory protein REPA 94.7 0.014 4.8E-07 50.5 2.7 23 182-204 30-52 (279)
276 3con_A GTPase NRAS; structural 94.7 0.016 5.5E-07 46.4 2.9 23 183-205 22-44 (190)
277 1ls1_A Signal recognition part 94.7 0.018 6.2E-07 50.6 3.4 24 181-204 97-120 (295)
278 2bbs_A Cystic fibrosis transme 94.7 0.016 5.4E-07 50.9 3.0 23 182-204 64-86 (290)
279 3nh6_A ATP-binding cassette SU 94.7 0.011 3.9E-07 52.2 2.0 24 181-204 79-102 (306)
280 3t1o_A Gliding protein MGLA; G 94.7 0.016 5.3E-07 46.5 2.7 23 182-204 14-36 (198)
281 2lkc_A Translation initiation 94.7 0.027 9.2E-07 44.4 4.1 25 180-204 6-30 (178)
282 3q72_A GTP-binding protein RAD 94.6 0.017 5.8E-07 45.0 2.8 21 184-204 4-24 (166)
283 2erx_A GTP-binding protein DI- 94.6 0.019 6.5E-07 44.8 3.1 23 183-205 4-26 (172)
284 1c1y_A RAS-related protein RAP 94.6 0.018 6.2E-07 44.8 2.9 23 183-205 4-26 (167)
285 1tue_A Replication protein E1; 94.6 0.029 9.8E-07 46.8 4.1 36 168-204 45-80 (212)
286 3tw8_B RAS-related protein RAB 94.6 0.022 7.6E-07 44.9 3.4 26 180-205 7-32 (181)
287 1z0j_A RAB-22, RAS-related pro 94.5 0.019 6.5E-07 44.8 2.9 23 183-205 7-29 (170)
288 4edh_A DTMP kinase, thymidylat 94.5 0.057 2E-06 45.0 6.0 24 182-205 6-29 (213)
289 1ek0_A Protein (GTP-binding pr 94.5 0.019 6.6E-07 44.7 2.9 22 184-205 5-26 (170)
290 1svi_A GTP-binding protein YSX 94.5 0.022 7.4E-07 45.8 3.3 25 181-205 22-46 (195)
291 3pqc_A Probable GTP-binding pr 94.5 0.023 7.8E-07 45.5 3.4 26 181-206 22-47 (195)
292 2ocp_A DGK, deoxyguanosine kin 94.5 0.021 7.2E-07 48.2 3.3 24 182-205 2-25 (241)
293 1z08_A RAS-related protein RAB 94.5 0.024 8.1E-07 44.3 3.3 24 182-205 6-29 (170)
294 1u94_A RECA protein, recombina 94.5 0.033 1.1E-06 50.3 4.7 45 180-226 61-105 (356)
295 3crm_A TRNA delta(2)-isopenten 94.5 0.021 7.1E-07 50.9 3.2 22 183-204 6-27 (323)
296 1kao_A RAP2A; GTP-binding prot 94.5 0.021 7E-07 44.3 2.9 23 183-205 4-26 (167)
297 1tq4_A IIGP1, interferon-induc 94.5 0.021 7.3E-07 52.6 3.4 25 180-204 67-91 (413)
298 1cp2_A CP2, nitrogenase iron p 94.5 0.021 7.2E-07 48.8 3.2 22 183-204 2-23 (269)
299 2dr3_A UPF0273 protein PH0284; 94.4 0.029 1E-06 46.9 4.0 40 181-222 22-61 (247)
300 3q85_A GTP-binding protein REM 94.4 0.027 9.1E-07 44.0 3.5 23 182-204 2-24 (169)
301 1nrj_B SR-beta, signal recogni 94.4 0.024 8.3E-07 46.6 3.4 26 180-205 10-35 (218)
302 2gj8_A MNME, tRNA modification 94.4 0.021 7.1E-07 45.4 2.8 23 183-205 5-27 (172)
303 3a8t_A Adenylate isopentenyltr 94.4 0.025 8.6E-07 50.6 3.6 25 181-205 39-63 (339)
304 2www_A Methylmalonic aciduria 94.4 0.025 8.5E-07 50.9 3.6 25 180-204 72-96 (349)
305 3tui_C Methionine import ATP-b 94.4 0.021 7.2E-07 51.7 3.1 23 182-204 54-76 (366)
306 1m7b_A RND3/RHOE small GTP-bin 94.4 0.021 7.2E-07 45.7 2.8 25 181-205 6-30 (184)
307 3zvl_A Bifunctional polynucleo 94.4 0.023 7.7E-07 52.4 3.4 26 180-205 256-281 (416)
308 1ky3_A GTP-binding protein YPT 94.4 0.027 9.2E-07 44.4 3.4 25 181-205 7-31 (182)
309 1r6b_X CLPA protein; AAA+, N-t 94.4 0.027 9.2E-07 55.9 4.1 46 159-204 458-510 (758)
310 2afh_E Nitrogenase iron protei 94.4 0.024 8.3E-07 49.2 3.4 23 182-204 2-24 (289)
311 1wms_A RAB-9, RAB9, RAS-relate 94.3 0.022 7.7E-07 44.8 2.9 24 182-205 7-30 (177)
312 1pui_A ENGB, probable GTP-bind 94.3 0.016 5.5E-07 47.3 2.1 25 181-205 25-49 (210)
313 3exa_A TRNA delta(2)-isopenten 94.3 0.026 8.8E-07 50.1 3.4 23 182-204 3-25 (322)
314 3fvq_A Fe(3+) IONS import ATP- 94.3 0.022 7.4E-07 51.6 3.0 23 182-204 30-52 (359)
315 1r2q_A RAS-related protein RAB 94.3 0.023 8E-07 44.2 2.9 23 182-204 6-28 (170)
316 1g16_A RAS-related protein SEC 94.3 0.023 7.7E-07 44.3 2.8 24 182-205 3-26 (170)
317 2hxs_A RAB-26, RAS-related pro 94.3 0.025 8.5E-07 44.6 3.1 24 182-205 6-29 (178)
318 1z0f_A RAB14, member RAS oncog 94.3 0.023 8E-07 44.6 2.9 26 181-206 14-39 (179)
319 1r8s_A ADP-ribosylation factor 94.3 0.022 7.4E-07 44.3 2.6 20 185-204 3-22 (164)
320 2cxx_A Probable GTP-binding pr 94.3 0.024 8.2E-07 45.2 2.9 22 184-205 3-24 (190)
321 4dsu_A GTPase KRAS, isoform 2B 94.3 0.024 8.1E-07 45.1 2.9 24 183-206 5-28 (189)
322 1z47_A CYSA, putative ABC-tran 94.3 0.024 8.1E-07 51.2 3.1 23 182-204 41-63 (355)
323 1f6b_A SAR1; gtpases, N-termin 94.2 0.02 7E-07 46.6 2.5 33 171-204 15-47 (198)
324 3ihw_A Centg3; RAS, centaurin, 94.2 0.024 8.2E-07 45.6 2.9 23 182-204 20-42 (184)
325 1upt_A ARL1, ADP-ribosylation 94.2 0.034 1.2E-06 43.4 3.7 23 182-204 7-29 (171)
326 1h65_A Chloroplast outer envel 94.2 0.058 2E-06 46.3 5.4 32 175-206 32-63 (270)
327 3kta_A Chromosome segregation 94.2 0.026 8.8E-07 45.2 3.0 21 183-203 27-47 (182)
328 1p5z_B DCK, deoxycytidine kina 94.2 0.019 6.6E-07 49.2 2.3 25 181-205 23-47 (263)
329 1lw7_A Transcriptional regulat 94.2 0.022 7.4E-07 51.4 2.8 23 182-204 170-192 (365)
330 2bme_A RAB4A, RAS-related prot 94.2 0.025 8.5E-07 45.0 2.8 25 181-205 9-33 (186)
331 2fn4_A P23, RAS-related protei 94.2 0.031 1E-06 44.0 3.3 25 181-205 8-32 (181)
332 3kkq_A RAS-related protein M-R 94.2 0.03 1E-06 44.5 3.3 25 181-205 17-41 (183)
333 3def_A T7I23.11 protein; chlor 94.2 0.058 2E-06 46.2 5.3 37 170-206 24-60 (262)
334 3c5c_A RAS-like protein 12; GD 94.1 0.026 8.8E-07 45.4 2.9 24 182-205 21-44 (187)
335 2a9k_A RAS-related protein RAL 94.1 0.026 9E-07 44.7 2.9 24 182-205 18-41 (187)
336 2qnr_A Septin-2, protein NEDD5 94.1 0.021 7.2E-07 50.3 2.5 22 182-204 19-40 (301)
337 2yyz_A Sugar ABC transporter, 94.1 0.026 8.9E-07 51.1 3.1 23 182-204 29-51 (359)
338 1m2o_B GTP-binding protein SAR 94.1 0.026 8.7E-07 45.6 2.8 23 182-204 23-45 (190)
339 1mh1_A RAC1; GTP-binding, GTPa 94.1 0.027 9.3E-07 44.6 2.9 23 182-204 5-27 (186)
340 3rlf_A Maltose/maltodextrin im 94.1 0.026 8.8E-07 51.5 3.0 23 182-204 29-51 (381)
341 2y8e_A RAB-protein 6, GH09086P 94.1 0.027 9.1E-07 44.3 2.8 22 183-204 15-36 (179)
342 1zj6_A ADP-ribosylation factor 94.1 0.069 2.3E-06 42.6 5.3 24 181-204 15-38 (187)
343 2it1_A 362AA long hypothetical 94.1 0.027 9.1E-07 51.0 3.1 23 182-204 29-51 (362)
344 2oil_A CATX-8, RAS-related pro 94.1 0.027 9.3E-07 45.2 2.9 25 181-205 24-48 (193)
345 3llu_A RAS-related GTP-binding 94.1 0.026 9.1E-07 45.7 2.8 25 181-205 19-43 (196)
346 3bc1_A RAS-related protein RAB 94.1 0.028 9.4E-07 44.8 2.9 25 181-205 10-34 (195)
347 1p9r_A General secretion pathw 94.1 0.061 2.1E-06 49.6 5.5 41 162-204 149-189 (418)
348 3t5g_A GTP-binding protein RHE 94.1 0.031 1.1E-06 44.3 3.2 23 182-204 6-28 (181)
349 1g29_1 MALK, maltose transport 94.0 0.027 9.4E-07 51.2 3.1 23 182-204 29-51 (372)
350 3cbq_A GTP-binding protein REM 94.0 0.024 8.1E-07 46.1 2.5 23 181-203 22-44 (195)
351 2bov_A RAla, RAS-related prote 94.0 0.028 9.5E-07 45.5 2.9 25 181-205 13-37 (206)
352 3bwd_D RAC-like GTP-binding pr 94.0 0.028 9.7E-07 44.4 2.9 24 182-205 8-31 (182)
353 2iwr_A Centaurin gamma 1; ANK 94.0 0.023 7.7E-07 45.0 2.3 24 182-205 7-30 (178)
354 2qu8_A Putative nucleolar GTP- 94.0 0.041 1.4E-06 45.8 4.0 26 180-205 27-52 (228)
355 2efe_B Small GTP-binding prote 94.0 0.028 9.7E-07 44.4 2.9 24 182-205 12-35 (181)
356 1vg8_A RAS-related protein RAB 94.0 0.035 1.2E-06 45.0 3.4 25 181-205 7-31 (207)
357 1v43_A Sugar-binding transport 94.0 0.029 9.8E-07 51.0 3.1 23 182-204 37-59 (372)
358 2h92_A Cytidylate kinase; ross 94.0 0.024 8.3E-07 46.8 2.5 22 183-204 4-25 (219)
359 4bas_A ADP-ribosylation factor 93.9 0.037 1.3E-06 44.5 3.5 27 180-206 15-41 (199)
360 2g6b_A RAS-related protein RAB 93.9 0.03 1E-06 44.1 2.9 24 182-205 10-33 (180)
361 1zbd_A Rabphilin-3A; G protein 93.9 0.033 1.1E-06 45.2 3.1 24 182-205 8-31 (203)
362 3v9p_A DTMP kinase, thymidylat 93.9 0.055 1.9E-06 45.6 4.6 24 182-205 25-48 (227)
363 2fg5_A RAB-22B, RAS-related pr 93.9 0.03 1E-06 45.2 2.8 25 181-205 22-46 (192)
364 2atv_A RERG, RAS-like estrogen 93.9 0.031 1E-06 45.2 2.9 24 182-205 28-51 (196)
365 2obl_A ESCN; ATPase, hydrolase 93.8 0.029 9.9E-07 50.5 2.9 24 182-205 71-94 (347)
366 1ega_A Protein (GTP-binding pr 93.8 0.036 1.2E-06 48.7 3.4 25 181-205 7-31 (301)
367 2x77_A ADP-ribosylation factor 93.8 0.055 1.9E-06 43.2 4.3 34 171-204 10-44 (189)
368 3clv_A RAB5 protein, putative; 93.8 0.032 1.1E-06 44.7 2.9 24 182-205 7-30 (208)
369 2ewv_A Twitching motility prot 93.8 0.033 1.1E-06 50.6 3.2 24 181-204 135-158 (372)
370 3foz_A TRNA delta(2)-isopenten 93.8 0.035 1.2E-06 49.2 3.2 24 181-204 9-32 (316)
371 1moz_A ARL1, ADP-ribosylation 93.8 0.032 1.1E-06 44.2 2.8 24 181-204 17-40 (183)
372 3tkl_A RAS-related protein RAB 93.8 0.033 1.1E-06 44.7 2.9 26 181-206 15-40 (196)
373 3k53_A Ferrous iron transport 93.8 0.039 1.3E-06 47.5 3.5 24 182-205 3-26 (271)
374 1ksh_A ARF-like protein 2; sma 93.8 0.046 1.6E-06 43.5 3.7 26 181-206 17-42 (186)
375 2q3h_A RAS homolog gene family 93.8 0.034 1.2E-06 45.0 2.9 25 181-205 19-43 (201)
376 1u0j_A DNA replication protein 93.7 0.064 2.2E-06 46.4 4.8 36 169-204 91-126 (267)
377 3oes_A GTPase rhebl1; small GT 93.7 0.033 1.1E-06 45.2 2.8 25 181-205 23-47 (201)
378 2b6h_A ADP-ribosylation factor 93.7 0.034 1.1E-06 45.0 2.8 25 181-205 28-52 (192)
379 3d31_A Sulfate/molybdate ABC t 93.7 0.023 8E-07 51.1 2.0 23 182-204 26-48 (348)
380 2gf9_A RAS-related protein RAB 93.7 0.035 1.2E-06 44.5 2.9 24 182-205 22-45 (189)
381 1zd9_A ADP-ribosylation factor 93.7 0.035 1.2E-06 44.5 2.9 24 182-205 22-45 (188)
382 2fh5_B SR-beta, signal recogni 93.7 0.035 1.2E-06 45.5 2.9 25 181-205 6-30 (214)
383 3io5_A Recombination and repai 93.7 0.12 4.2E-06 45.9 6.5 42 184-227 30-73 (333)
384 2gza_A Type IV secretion syste 93.7 0.028 9.7E-07 50.8 2.5 23 182-204 175-197 (361)
385 3reg_A RHO-like small GTPase; 93.7 0.035 1.2E-06 44.6 2.9 25 181-205 22-46 (194)
386 2a5j_A RAS-related protein RAB 93.7 0.036 1.2E-06 44.6 2.9 24 182-205 21-44 (191)
387 3jvv_A Twitching mobility prot 93.7 0.069 2.4E-06 48.2 5.1 23 182-204 123-145 (356)
388 2ffh_A Protein (FFH); SRP54, s 93.7 0.039 1.3E-06 51.0 3.5 24 181-204 97-120 (425)
389 1x3s_A RAS-related protein RAB 93.7 0.036 1.2E-06 44.3 2.9 24 182-205 15-38 (195)
390 2o52_A RAS-related protein RAB 93.6 0.035 1.2E-06 45.1 2.8 25 181-205 24-48 (200)
391 3dz8_A RAS-related protein RAB 93.6 0.032 1.1E-06 44.9 2.5 24 182-205 23-46 (191)
392 2il1_A RAB12; G-protein, GDP, 93.6 0.035 1.2E-06 44.8 2.8 25 182-206 26-50 (192)
393 2p5s_A RAS and EF-hand domain 93.6 0.037 1.3E-06 44.8 2.9 25 181-205 27-51 (199)
394 1z06_A RAS-related protein RAB 93.6 0.037 1.3E-06 44.3 2.9 25 181-205 19-43 (189)
395 1oxx_K GLCV, glucose, ABC tran 93.6 0.021 7.2E-07 51.6 1.4 23 182-204 31-53 (353)
396 3lxx_A GTPase IMAP family memb 93.6 0.048 1.6E-06 45.8 3.6 26 181-206 28-53 (239)
397 3gd7_A Fusion complex of cysti 93.6 0.035 1.2E-06 50.7 3.0 23 182-204 47-69 (390)
398 1xp8_A RECA protein, recombina 93.6 0.059 2E-06 48.8 4.4 44 181-226 73-116 (366)
399 2ew1_A RAS-related protein RAB 93.6 0.037 1.3E-06 45.3 2.8 24 181-204 25-48 (201)
400 1qvr_A CLPB protein; coiled co 93.6 0.057 1.9E-06 54.4 4.7 45 160-204 559-610 (854)
401 2gf0_A GTP-binding protein DI- 93.5 0.035 1.2E-06 44.6 2.6 23 182-204 8-30 (199)
402 3lv8_A DTMP kinase, thymidylat 93.5 0.087 3E-06 44.7 5.2 52 182-234 27-78 (236)
403 2qag_B Septin-6, protein NEDD5 93.5 0.036 1.2E-06 51.2 3.0 21 184-204 44-64 (427)
404 1gwn_A RHO-related GTP-binding 93.5 0.045 1.6E-06 44.9 3.3 25 181-205 27-51 (205)
405 3ld9_A DTMP kinase, thymidylat 93.5 0.092 3.1E-06 44.1 5.2 25 181-205 20-44 (223)
406 4tmk_A Protein (thymidylate ki 93.5 0.097 3.3E-06 43.6 5.3 52 183-235 4-55 (213)
407 4hlc_A DTMP kinase, thymidylat 93.5 0.13 4.4E-06 42.5 6.0 23 183-205 3-25 (205)
408 2bcg_Y Protein YP2, GTP-bindin 93.5 0.039 1.3E-06 44.9 2.8 24 182-205 8-31 (206)
409 3ea0_A ATPase, para family; al 93.5 0.047 1.6E-06 45.7 3.4 24 181-204 3-27 (245)
410 2j1l_A RHO-related GTP-binding 93.5 0.039 1.3E-06 45.4 2.8 25 181-205 33-57 (214)
411 3k9g_A PF-32 protein; ssgcid, 93.4 0.043 1.5E-06 46.9 3.1 25 180-204 25-50 (267)
412 4dzz_A Plasmid partitioning pr 93.4 0.043 1.5E-06 44.6 3.0 22 183-204 2-24 (206)
413 2h57_A ADP-ribosylation factor 93.4 0.036 1.2E-06 44.5 2.5 25 182-206 21-45 (190)
414 2cjw_A GTP-binding protein GEM 93.4 0.04 1.4E-06 44.6 2.8 22 182-203 6-27 (192)
415 2h17_A ADP-ribosylation factor 93.4 0.039 1.3E-06 43.9 2.7 24 182-205 21-44 (181)
416 2fv8_A H6, RHO-related GTP-bin 93.4 0.04 1.4E-06 45.0 2.8 24 182-205 25-48 (207)
417 3cwq_A Para family chromosome 93.4 0.041 1.4E-06 45.5 2.8 21 184-204 2-23 (209)
418 2pt7_A CAG-ALFA; ATPase, prote 93.4 0.033 1.1E-06 49.7 2.4 22 183-204 172-193 (330)
419 1mky_A Probable GTP-binding pr 93.3 0.086 2.9E-06 48.8 5.2 44 162-205 151-203 (439)
420 3upu_A ATP-dependent DNA helic 93.3 0.085 2.9E-06 49.1 5.2 21 184-204 47-67 (459)
421 3cph_A RAS-related protein SEC 93.3 0.044 1.5E-06 44.6 2.9 25 181-205 19-43 (213)
422 1ypw_A Transitional endoplasmi 93.3 0.025 8.7E-07 56.6 1.6 48 158-205 476-534 (806)
423 3iev_A GTP-binding protein ERA 93.2 0.054 1.8E-06 47.7 3.5 26 180-205 8-33 (308)
424 2npi_A Protein CLP1; CLP1-PCF1 93.2 0.034 1.1E-06 52.0 2.3 24 181-204 137-160 (460)
425 1yqt_A RNAse L inhibitor; ATP- 93.2 0.043 1.5E-06 52.3 3.1 24 182-205 312-335 (538)
426 3eph_A TRNA isopentenyltransfe 93.2 0.047 1.6E-06 50.1 3.2 22 183-204 3-24 (409)
427 3ozx_A RNAse L inhibitor; ATP 93.2 0.044 1.5E-06 52.3 3.1 22 183-204 295-316 (538)
428 2hup_A RAS-related protein RAB 93.2 0.045 1.5E-06 44.6 2.8 26 180-205 27-52 (201)
429 1u0l_A Probable GTPase ENGC; p 93.2 0.068 2.3E-06 46.9 4.1 34 167-205 159-192 (301)
430 2fu5_C RAS-related protein RAB 93.2 0.028 9.5E-07 44.6 1.5 24 182-205 8-31 (183)
431 2f7s_A C25KG, RAS-related prot 93.2 0.05 1.7E-06 44.6 3.1 25 181-205 24-48 (217)
432 2atx_A Small GTP binding prote 93.2 0.045 1.5E-06 44.0 2.7 24 182-205 18-41 (194)
433 2gco_A H9, RHO-related GTP-bin 93.2 0.046 1.6E-06 44.4 2.8 24 182-205 25-48 (201)
434 2j0v_A RAC-like GTP-binding pr 93.1 0.046 1.6E-06 44.6 2.8 24 182-205 9-32 (212)
435 3gmt_A Adenylate kinase; ssgci 93.1 0.046 1.6E-06 46.2 2.8 23 182-204 8-30 (230)
436 4gzl_A RAS-related C3 botulinu 93.1 0.066 2.2E-06 43.7 3.6 24 182-205 30-53 (204)
437 2qag_A Septin-2, protein NEDD5 93.1 0.045 1.5E-06 49.4 2.8 46 159-205 15-60 (361)
438 2axn_A 6-phosphofructo-2-kinas 93.1 0.056 1.9E-06 51.3 3.6 24 181-204 34-57 (520)
439 2rcn_A Probable GTPase ENGC; Y 93.1 0.051 1.7E-06 49.1 3.1 24 183-206 216-239 (358)
440 2orw_A Thymidine kinase; TMTK, 93.0 0.05 1.7E-06 44.2 2.8 21 183-203 4-24 (184)
441 2yv5_A YJEQ protein; hydrolase 93.0 0.052 1.8E-06 47.7 3.1 31 168-203 156-186 (302)
442 2aka_B Dynamin-1; fusion prote 93.0 0.1 3.5E-06 45.1 5.0 38 169-206 9-50 (299)
443 3ozx_A RNAse L inhibitor; ATP 93.0 0.053 1.8E-06 51.7 3.3 24 181-204 24-47 (538)
444 2r6a_A DNAB helicase, replicat 93.0 0.17 5.6E-06 47.1 6.6 53 180-235 201-253 (454)
445 3q9l_A Septum site-determining 93.0 0.059 2E-06 45.6 3.3 22 183-204 3-25 (260)
446 4dhe_A Probable GTP-binding pr 93.0 0.035 1.2E-06 45.7 1.8 27 180-206 27-53 (223)
447 3cr8_A Sulfate adenylyltranfer 93.0 0.036 1.2E-06 53.0 2.1 24 181-204 368-391 (552)
448 3fdi_A Uncharacterized protein 93.0 0.054 1.9E-06 44.6 2.9 23 182-204 6-28 (201)
449 3q3j_B RHO-related GTP-binding 93.0 0.053 1.8E-06 44.7 2.9 24 182-205 27-50 (214)
450 2xtp_A GTPase IMAP family memb 92.9 0.068 2.3E-06 45.4 3.6 25 181-205 21-45 (260)
451 1wf3_A GTP-binding protein; GT 92.9 0.067 2.3E-06 47.0 3.7 25 181-205 6-30 (301)
452 2dpy_A FLII, flagellum-specifi 92.9 0.049 1.7E-06 50.6 2.9 24 182-205 157-180 (438)
453 2qag_C Septin-7; cell cycle, c 92.9 0.051 1.7E-06 50.2 2.9 21 185-205 34-54 (418)
454 3euj_A Chromosome partition pr 92.9 0.055 1.9E-06 50.8 3.1 22 183-204 30-51 (483)
455 1yqt_A RNAse L inhibitor; ATP- 92.8 0.054 1.8E-06 51.7 3.1 23 182-204 47-69 (538)
456 1jwy_B Dynamin A GTPase domain 92.8 0.042 1.4E-06 48.1 2.2 26 180-205 22-47 (315)
457 2g3y_A GTP-binding protein GEM 92.8 0.057 2E-06 44.8 2.9 24 181-204 36-59 (211)
458 3bk7_A ABC transporter ATP-bin 92.8 0.055 1.9E-06 52.4 3.1 23 182-204 382-404 (607)
459 3kjh_A CO dehydrogenase/acetyl 92.8 0.04 1.4E-06 46.2 1.9 21 184-204 2-22 (254)
460 3ch4_B Pmkase, phosphomevalona 92.7 0.083 2.8E-06 43.7 3.7 24 181-204 10-33 (202)
461 3f9v_A Minichromosome maintena 92.7 0.039 1.3E-06 53.3 1.9 21 184-204 329-349 (595)
462 4a1f_A DNAB helicase, replicat 92.6 0.28 9.6E-06 43.8 7.3 54 181-238 45-98 (338)
463 3j16_B RLI1P; ribosome recycli 92.6 0.061 2.1E-06 52.1 3.1 22 183-204 379-400 (608)
464 3t5d_A Septin-7; GTP-binding p 92.5 0.058 2E-06 46.5 2.7 23 183-205 9-31 (274)
465 2qmh_A HPR kinase/phosphorylas 92.5 0.075 2.5E-06 44.0 3.1 23 182-204 34-56 (205)
466 3iby_A Ferrous iron transport 92.5 0.063 2.2E-06 46.0 2.8 23 183-205 2-24 (256)
467 2r8r_A Sensor protein; KDPD, P 92.5 0.071 2.4E-06 45.0 3.1 21 184-204 8-28 (228)
468 3fkq_A NTRC-like two-domain pr 92.5 0.087 3E-06 47.6 3.9 25 180-204 141-166 (373)
469 1bif_A 6-phosphofructo-2-kinas 92.5 0.074 2.5E-06 49.7 3.5 24 181-204 38-61 (469)
470 3b60_A Lipid A export ATP-bind 92.4 0.062 2.1E-06 51.6 3.0 24 181-204 368-391 (582)
471 2qtf_A Protein HFLX, GTP-bindi 92.4 0.068 2.3E-06 48.3 3.1 26 181-206 178-203 (364)
472 3j16_B RLI1P; ribosome recycli 92.4 0.064 2.2E-06 51.9 3.0 23 182-204 103-125 (608)
473 3cpj_B GTP-binding protein YPT 92.4 0.069 2.4E-06 44.1 2.9 25 181-205 12-36 (223)
474 1fx0_B ATP synthase beta chain 92.3 0.17 5.7E-06 47.6 5.6 53 182-235 165-218 (498)
475 2yl4_A ATP-binding cassette SU 92.3 0.064 2.2E-06 51.7 2.9 24 181-204 369-392 (595)
476 3lxw_A GTPase IMAP family memb 92.3 0.077 2.6E-06 45.0 3.1 25 182-206 21-45 (247)
477 3b1v_A Ferrous iron uptake tra 92.3 0.087 3E-06 45.6 3.5 24 182-205 3-26 (272)
478 1g3q_A MIND ATPase, cell divis 92.3 0.084 2.9E-06 43.9 3.3 22 183-204 3-25 (237)
479 2ck3_D ATP synthase subunit be 92.2 0.15 5.1E-06 47.7 5.2 54 182-236 153-207 (482)
480 3bk7_A ABC transporter ATP-bin 92.2 0.071 2.4E-06 51.6 3.1 23 182-204 117-139 (607)
481 3b5x_A Lipid A export ATP-bind 92.2 0.068 2.3E-06 51.4 2.9 24 181-204 368-391 (582)
482 2zts_A Putative uncharacterize 92.2 0.1 3.5E-06 43.6 3.7 50 181-233 29-78 (251)
483 1f2t_A RAD50 ABC-ATPase; DNA d 92.2 0.096 3.3E-06 40.9 3.3 22 182-203 23-44 (149)
484 3a1s_A Iron(II) transport prot 92.2 0.084 2.9E-06 45.2 3.2 25 181-205 4-28 (258)
485 3qf4_B Uncharacterized ABC tra 92.1 0.073 2.5E-06 51.4 3.0 24 181-204 380-403 (598)
486 4dkx_A RAS-related protein RAB 92.0 0.082 2.8E-06 44.0 2.9 21 184-204 15-35 (216)
487 2e87_A Hypothetical protein PH 92.0 0.09 3.1E-06 47.2 3.4 25 181-205 166-190 (357)
488 1dek_A Deoxynucleoside monopho 92.0 0.093 3.2E-06 44.7 3.3 22 183-204 2-23 (241)
489 3ez2_A Plasmid partition prote 92.0 0.16 5.5E-06 46.1 5.0 26 179-204 105-131 (398)
490 1t9h_A YLOQ, probable GTPase E 91.9 0.037 1.3E-06 48.9 0.7 23 183-205 174-196 (307)
491 2gno_A DNA polymerase III, gam 91.9 0.16 5.4E-06 44.7 4.7 73 163-239 1-76 (305)
492 2yc2_C IFT27, small RAB-relate 91.9 0.038 1.3E-06 44.7 0.6 24 182-205 20-43 (208)
493 2ph1_A Nucleotide-binding prot 91.8 0.087 3E-06 45.0 2.9 23 182-204 18-41 (262)
494 4djt_A GTP-binding nuclear pro 91.8 0.044 1.5E-06 45.0 0.9 23 182-204 11-33 (218)
495 2xj4_A MIPZ; replication, cell 91.7 0.089 3E-06 45.6 2.9 22 183-204 5-27 (286)
496 1m8p_A Sulfate adenylyltransfe 91.7 0.11 3.6E-06 50.0 3.6 24 181-204 395-418 (573)
497 1g8f_A Sulfate adenylyltransfe 91.6 0.13 4.4E-06 48.7 4.0 25 181-205 394-418 (511)
498 1tf7_A KAIC; homohexamer, hexa 91.6 0.09 3.1E-06 49.8 3.0 19 184-202 41-59 (525)
499 2hjg_A GTP-binding protein ENG 91.5 0.18 6.1E-06 46.6 4.9 45 162-206 150-199 (436)
500 2oap_1 GSPE-2, type II secreti 91.5 0.082 2.8E-06 50.1 2.6 21 184-204 262-282 (511)
No 1
>3qfl_A MLA10; coiled-coil, (CC) domain, NLRS, nucleotide-binding domain, L rich repeat containing receptors, protein binding; 2.00A {Hordeum vulgare}
Probab=99.79 E-value=9e-20 Score=140.27 Aligned_cols=82 Identities=23% Similarity=0.265 Sum_probs=76.6
Q ss_pred cHHHHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhh--hcCCchHHHHHHHHHHH
Q 047336 3 ISFRLFSERLRRVLAGEEVMLSDTAKQPIHNLNAEVEIVTSWLREFEDDISCLLFHKIAEE--EIDDPDFGTIMDEINCF 80 (290)
Q Consensus 3 ~~v~~~l~kL~~~~l~~e~~~~~~v~~~v~~L~~eL~~i~~~l~d~~~~~~~~~~~~~~~~--~~~~~~~~~Wl~~lr~~ 80 (290)
++|+++++||+ +++.+|+.++.||++++++|+++|++|++||.|++ .+ +..++.++.|+++||++
T Consensus 1 a~v~~ll~KL~-~ll~~E~~l~~gv~~~i~~Lk~eL~~m~a~L~da~------------~~~~~~~d~~vk~W~~~vrdl 67 (115)
T 3qfl_A 1 AAISNLIPKLG-ELLTEEFKLHKGVKKNIEDLGKELESMNAALIKIG------------EVPREQLDSQDKLWADEVREL 67 (115)
T ss_dssp CTTCSHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT------------TSCGGGCCHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHH-HHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHH------------HhccccCCHHHHHHHHHHHHH
Confidence 36788999999 99999999999999999999999999999999999 55 56899999999999999
Q ss_pred HHHhHhHHHHHHhhhhc
Q 047336 81 TYESGKVIDTLINSITQ 97 (290)
Q Consensus 81 a~d~eD~lD~~~~~~~~ 97 (290)
+||+||+||+|.++..+
T Consensus 68 aYD~ED~iD~f~~~~~~ 84 (115)
T 3qfl_A 68 SYVIEDVVDKFLVQVDG 84 (115)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcc
Confidence 99999999999998764
No 2
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=99.73 E-value=1.3e-17 Score=161.13 Aligned_cols=115 Identities=9% Similarity=0.111 Sum_probs=90.9
Q ss_pred cccchhHHHHHHHHhcC-CCCcEEEEEEcCCCCChhHHHHHHhc--cccccccCCeeEEEECCCCC--CHHHHHHHHHHH
Q 047336 162 VGLDDRMEELLDLLIEG-PTQLSVVAILDSIGLDKTAFTAEAYN--SSYVKHYFDYLAWIPAPYQY--DPDQILDTVTWL 236 (290)
Q Consensus 162 vG~e~~~~~L~~~L~~~-~~~~~Vi~IvGmgGiGKTTLa~~vy~--d~~v~~~F~~~~wV~vs~~~--~~~~ll~~Il~~ 236 (290)
+||+.++++|.++|..+ +...+||+||||||+||||||+.+|+ +.+++.+|++++||+||+.+ ++..+++.|+.+
T Consensus 131 ~GR~~~~~~l~~~L~~~~~~~~~vv~I~G~gGvGKTtLA~~v~~~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~~~il~~ 210 (549)
T 2a5y_B 131 YIREYHVDRVIKKLDEMCDLDSFFLFLHGRAGSGKSVIASQALSKSDQLIGINYDSIVWLKDSGTAPKSTFDLFTDILLM 210 (549)
T ss_dssp CCCHHHHHHHHHHHHHHTTSSSEEEEEECSTTSSHHHHHHHHHHHCSSTBTTTBSEEEEEECCCCSTTHHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHhcccCCCceEEEEEcCCCCCHHHHHHHHHHhhhHHHhccCCcEEEEEECCCCCCCHHHHHHHHHHH
Confidence 69999999999999865 45689999999999999999999998 67899999999999999985 899999999999
Q ss_pred hhhcCCCchhhHHHHhHHHHhhhccccchhhHHHHHHHHhhc---ceEE--Eeccc
Q 047336 237 SRRNLSFSRSWIQKENIAALWKISISFQPCILAAVLKIYWAD---YLIF--EISEY 287 (290)
Q Consensus 237 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~---yLiV--~~~~~ 287 (290)
+........ + .+.+...... +...|+++|++ |||| |+|..
T Consensus 211 l~~~~~~~~-------~---~~~~~~~~~~-l~~~l~~~L~~~kr~LlVLDdv~~~ 255 (549)
T 2a5y_B 211 LKSEDDLLN-------F---PSVEHVTSVV-LKRMICNALIDRPNTLFVFDDVVQE 255 (549)
T ss_dssp HTTTSCCTT-------C---CCCTTCCHHH-HHHHHHHHHTTSTTEEEEEEEECCH
T ss_pred HhcCccccc-------c---cccccccHHH-HHHHHHHHHcCCCcEEEEEECCCCc
Confidence 986532000 0 0011111112 77889999965 9999 88763
No 3
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=99.49 E-value=3.5e-14 Score=143.33 Aligned_cols=77 Identities=21% Similarity=0.210 Sum_probs=69.7
Q ss_pred ccccchhHHHHHHHHhcCCCCcEEEEEEcCCCCChhHHHHHHhccccccccCCe-eEEEECCCCCCHHHHHHHHHHHhh
Q 047336 161 TVGLDDRMEELLDLLIEGPTQLSVVAILDSIGLDKTAFTAEAYNSSYVKHYFDY-LAWIPAPYQYDPDQILDTVTWLSR 238 (290)
Q Consensus 161 ~vG~e~~~~~L~~~L~~~~~~~~Vi~IvGmgGiGKTTLa~~vy~d~~v~~~F~~-~~wV~vs~~~~~~~ll~~Il~~l~ 238 (290)
.|||+.+.++|.++|...+ ..++|+|+||||+||||||+.+|++.++..+|++ ++||++++.++...++..|++.+.
T Consensus 130 ~VGRe~eLeeL~elL~~~d-~~RVV~IvGmGGIGKTTLAk~Vy~d~rV~~~Fd~gV~WVsVs~~~d~~~IL~~Ll~lL~ 207 (1221)
T 1vt4_I 130 NVSRLQPYLKLRQALLELR-PAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLY 207 (1221)
T ss_dssp CCCCHHHHHHHHHHHHHCC-SSCEEEECCSTTSSHHHHHHHHHHHCHHHHHHSSCEEEEECCCSSSHHHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHhccC-CCeEEEEEcCCCccHHHHHHHHHHhhHHHHhCCCcEEEEEeCCCCCHHHHHHHHHHHHh
Confidence 4999999999999998632 3789999999999999999999998889999998 899999999999999998888654
No 4
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=99.49 E-value=6.9e-14 Score=145.50 Aligned_cols=116 Identities=16% Similarity=0.135 Sum_probs=84.0
Q ss_pred CCCcccccchhHHHHHHHHhcCCCCcEEEEEEcCCCCChhHHHHHHhccccc-cccCC-eeEEEECCCCCC--HHHHHHH
Q 047336 157 KNRNTVGLDDRMEELLDLLIEGPTQLSVVAILDSIGLDKTAFTAEAYNSSYV-KHYFD-YLAWIPAPYQYD--PDQILDT 232 (290)
Q Consensus 157 ~~~~~vG~e~~~~~L~~~L~~~~~~~~Vi~IvGmgGiGKTTLa~~vy~d~~v-~~~F~-~~~wV~vs~~~~--~~~ll~~ 232 (290)
....+|||+.++++|.++|...+...++|+|+||||+||||||+++|++... ..+|. .+.||++++.++ ....++.
T Consensus 122 ~~~~~vgR~~~~~~l~~~l~~~~~~~~~v~i~G~gG~GKTtLa~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 201 (1249)
T 3sfz_A 122 RPVIFVTRKKLVHAIQQKLWKLNGEPGWVTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVSIGKQDKSGLLMKLQN 201 (1249)
T ss_dssp CCSSCCCCHHHHHHHHHHHHTTTTSCEEEEEECSTTSSHHHHHHHHTCCHHHHTTTSTTCEEEEECCSCCHHHHHHHHHH
T ss_pred CCceeccHHHHHHHHHHHHhhccCCCCEEEEEeCCCCCHHHHHHHHhcChhHHHhhCCCeEEEEEECCcCchHHHHHHHH
Confidence 4566999999999999999876677999999999999999999999997543 44554 567999999654 3445777
Q ss_pred HHHHhhhcCCCchhhHHHHhHHHHhhhccccchhhHHHHHHHHhhc----ceEE--Eecc
Q 047336 233 VTWLSRRNLSFSRSWIQKENIAALWKISISFQPCILAAVLKIYWAD----YLIF--EISE 286 (290)
Q Consensus 233 Il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~----yLiV--~~~~ 286 (290)
++..+......+ .......+.+...|+.+|.+ |||| |+|+
T Consensus 202 ~~~~l~~~~~~~--------------~~~~~~~~~~~~~l~~~l~~~~~~~LlvlDd~~~ 247 (1249)
T 3sfz_A 202 LCMRLDQEESFS--------------QRLPLNIEEAKDRLRVLMLRKHPRSLLILDDVWD 247 (1249)
T ss_dssp HHHHHTTTCTTC--------------SSCCSSHHHHHHHHHHHTSSSSCSCEEEEESCCC
T ss_pred HHHHhhhhcccc--------------cCCCCCHHHHHHHHHHHHhccCCCEEEEEecCCC
Confidence 777776543210 00111111267778888854 8988 6664
No 5
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=99.31 E-value=6.8e-12 Score=121.61 Aligned_cols=76 Identities=18% Similarity=0.188 Sum_probs=62.8
Q ss_pred CCcccccchhHHHHHHHHhcCCCCcEEEEEEcCCCCChhHHHHHHhccccc-cccC-CeeEEEECCCCCCHHHHHHHHH
Q 047336 158 NRNTVGLDDRMEELLDLLIEGPTQLSVVAILDSIGLDKTAFTAEAYNSSYV-KHYF-DYLAWIPAPYQYDPDQILDTVT 234 (290)
Q Consensus 158 ~~~~vG~e~~~~~L~~~L~~~~~~~~Vi~IvGmgGiGKTTLa~~vy~d~~v-~~~F-~~~~wV~vs~~~~~~~ll~~Il 234 (290)
...+|||+.+.++|.++|.......++|+|+||||+||||||+.+|++..+ ..+| +.++|++++.. +...++..+.
T Consensus 123 ~~~~vGR~~~l~~L~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~v~wv~~~~~-~~~~~~~~l~ 200 (591)
T 1z6t_A 123 PVVFVTRKKLVNAIQQKLSKLKGEPGWVTIHGMAGCGKSVLAAEAVRDHSLLEGCFPGGVHWVSVGKQ-DKSGLLMKLQ 200 (591)
T ss_dssp CSSCCCCHHHHHHHHHHHTTSTTSCEEEEEECCTTSSHHHHHHHHHCCHHHHHHHCTTCEEEEEEESC-CHHHHHHHHH
T ss_pred CCeecccHHHHHHHHHHHhcccCCCceEEEEcCCCCCHHHHHHHHHhchhHHHhhCCCceEEEECCCC-chHHHHHHHH
Confidence 456999999999999999865556899999999999999999999997655 7789 47999999876 4445555543
No 6
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=98.61 E-value=1.1e-07 Score=87.37 Aligned_cols=80 Identities=14% Similarity=0.076 Sum_probs=60.6
Q ss_pred CcccccchhHHHHHHHH-hc---C-CCCcEEEEE--EcCCCCChhHHHHHHhccccccc-----cCCe-eEEEECCCCCC
Q 047336 159 RNTVGLDDRMEELLDLL-IE---G-PTQLSVVAI--LDSIGLDKTAFTAEAYNSSYVKH-----YFDY-LAWIPAPYQYD 225 (290)
Q Consensus 159 ~~~vG~e~~~~~L~~~L-~~---~-~~~~~Vi~I--vGmgGiGKTTLa~~vy~d~~v~~-----~F~~-~~wV~vs~~~~ 225 (290)
..++||+.+.+.|.++| .. + ......+-| +|++|+||||||+.+++. ... .|+. .+|+..+...+
T Consensus 22 ~~l~gR~~el~~l~~~l~~~~~~~~~~~~~~~li~i~G~~G~GKT~L~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 99 (412)
T 1w5s_A 22 PELRVRRGEAEALARIYLNRLLSGAGLSDVNMIYGSIGRVGIGKTTLAKFTVKR--VSEAAAKEGLTVKQAYVNAFNAPN 99 (412)
T ss_dssp SSCSSSCHHHHHHHHHHHHHHHTSSCBCCEEEEEECTTCCSSSHHHHHHHHHHH--HHHHHHHTTCCEEEEEEEGGGCCS
T ss_pred CCCCChHHHHHHHHHHHhHHHhcCCCCCCCEEEEeCcCcCCCCHHHHHHHHHHH--HHHHHhccCCceeEEEEECCCCCC
Confidence 67999999999999998 42 2 022344555 999999999999999984 332 2343 57888777788
Q ss_pred HHHHHHHHHHHhhhc
Q 047336 226 PDQILDTVTWLSRRN 240 (290)
Q Consensus 226 ~~~ll~~Il~~l~~~ 240 (290)
...+++.|+.++...
T Consensus 100 ~~~~~~~l~~~l~~~ 114 (412)
T 1w5s_A 100 LYTILSLIVRQTGYP 114 (412)
T ss_dssp HHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHhCCC
Confidence 999999999988643
No 7
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=98.46 E-value=4.8e-07 Score=82.32 Aligned_cols=79 Identities=11% Similarity=0.016 Sum_probs=62.0
Q ss_pred CcccccchhHHHHHHHHhc--CCCCcEEEEEEcCCCCChhHHHHHHhcccccccc--------CCeeEEEECCCCC-CHH
Q 047336 159 RNTVGLDDRMEELLDLLIE--GPTQLSVVAILDSIGLDKTAFTAEAYNSSYVKHY--------FDYLAWIPAPYQY-DPD 227 (290)
Q Consensus 159 ~~~vG~e~~~~~L~~~L~~--~~~~~~Vi~IvGmgGiGKTTLa~~vy~d~~v~~~--------F~~~~wV~vs~~~-~~~ 227 (290)
.+++|++...++|.++|.. .....+.+.|+|++|+||||||+.+++. .... ....+|+..+... +..
T Consensus 20 ~~l~gr~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~la~~l~~~--~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 97 (384)
T 2qby_B 20 KEIPFREDILRDAAIAIRYFVKNEVKFSNLFLGLTGTGKTFVSKYIFNE--IEEVKKEDEEYKDVKQAYVNCREVGGTPQ 97 (384)
T ss_dssp SSCTTCHHHHHHHHHHHHHHHTTCCCCEEEEEECTTSSHHHHHHHHHHH--HHHHHHHSSSSTTCEEEEEEHHHHCSCHH
T ss_pred CCCCChHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHH--HHHHhhhhcCCCCceEEEEECccCCCCHH
Confidence 6799999999999988865 2334568899999999999999999983 3221 2346788777666 888
Q ss_pred HHHHHHHHHhhh
Q 047336 228 QILDTVTWLSRR 239 (290)
Q Consensus 228 ~ll~~Il~~l~~ 239 (290)
.++..++.++..
T Consensus 98 ~~~~~l~~~l~~ 109 (384)
T 2qby_B 98 AVLSSLAGKLTG 109 (384)
T ss_dssp HHHHHHHHHHHC
T ss_pred HHHHHHHHHhcC
Confidence 899999988853
No 8
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=98.44 E-value=2.2e-06 Score=77.96 Aligned_cols=79 Identities=13% Similarity=0.086 Sum_probs=62.5
Q ss_pred CcccccchhHHHHHHHHhc---C-CCCcEEEEEEcCCCCChhHHHHHHhccccccccC-CeeEEEECCCCCCHHHHHHHH
Q 047336 159 RNTVGLDDRMEELLDLLIE---G-PTQLSVVAILDSIGLDKTAFTAEAYNSSYVKHYF-DYLAWIPAPYQYDPDQILDTV 233 (290)
Q Consensus 159 ~~~vG~e~~~~~L~~~L~~---~-~~~~~Vi~IvGmgGiGKTTLa~~vy~d~~v~~~F-~~~~wV~vs~~~~~~~ll~~I 233 (290)
..++|++...+.|.+++.. + ....+.+.|+|++|+|||||++.+.+. ..... ...+|+..+...+...++..+
T Consensus 17 ~~l~gr~~~~~~l~~~l~~~~~~~~~~~~~~li~G~~G~GKTtl~~~l~~~--~~~~~~~~~~~i~~~~~~~~~~~~~~l 94 (389)
T 1fnn_A 17 KRLPHREQQLQQLDILLGNWLRNPGHHYPRATLLGRPGTGKTVTLRKLWEL--YKDKTTARFVYINGFIYRNFTAIIGEI 94 (389)
T ss_dssp SCCTTCHHHHHHHHHHHHHHHHSTTSSCCEEEEECCTTSSHHHHHHHHHHH--HTTSCCCEEEEEETTTCCSHHHHHHHH
T ss_pred CCCCChHHHHHHHHHHHHHHHcCCCCCCCeEEEECCCCCCHHHHHHHHHHH--HhhhcCeeEEEEeCccCCCHHHHHHHH
Confidence 6799999999999999875 2 223448899999999999999999983 33322 246778878888888999999
Q ss_pred HHHhhh
Q 047336 234 TWLSRR 239 (290)
Q Consensus 234 l~~l~~ 239 (290)
+..+..
T Consensus 95 ~~~l~~ 100 (389)
T 1fnn_A 95 ARSLNI 100 (389)
T ss_dssp HHHTTC
T ss_pred HHHhCc
Confidence 988854
No 9
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=98.44 E-value=8.6e-07 Score=80.42 Aligned_cols=79 Identities=11% Similarity=0.053 Sum_probs=62.9
Q ss_pred CcccccchhHHHHHHHHhcC--CCCcEEEEEEcCCCCChhHHHHHHhccccccccC-----C-eeEEEECCCCCCHHHHH
Q 047336 159 RNTVGLDDRMEELLDLLIEG--PTQLSVVAILDSIGLDKTAFTAEAYNSSYVKHYF-----D-YLAWIPAPYQYDPDQIL 230 (290)
Q Consensus 159 ~~~vG~e~~~~~L~~~L~~~--~~~~~Vi~IvGmgGiGKTTLa~~vy~d~~v~~~F-----~-~~~wV~vs~~~~~~~ll 230 (290)
..++|++...+.|..+|... ......+.|+|++|+||||||+.+.+. ....+ + ..+|+..+...+...++
T Consensus 19 ~~~~gr~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~l~~~~~~~--~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 96 (387)
T 2v1u_A 19 DVLPHREAELRRLAEVLAPALRGEKPSNALLYGLTGTGKTAVARLVLRR--LEARASSLGVLVKPIYVNARHRETPYRVA 96 (387)
T ss_dssp SCCTTCHHHHHHHHHTTGGGTSSCCCCCEEECBCTTSSHHHHHHHHHHH--HHHHHHHHTCCEEEEEEETTTSCSHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHH--HHHHHhccCCCeEEEEEECCcCCCHHHHH
Confidence 67999999999999998642 344667889999999999999999983 32211 2 36788888888888999
Q ss_pred HHHHHHhhh
Q 047336 231 DTVTWLSRR 239 (290)
Q Consensus 231 ~~Il~~l~~ 239 (290)
..++.++..
T Consensus 97 ~~l~~~l~~ 105 (387)
T 2v1u_A 97 SAIAEAVGV 105 (387)
T ss_dssp HHHHHHHSC
T ss_pred HHHHHHhCC
Confidence 999988854
No 10
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=98.38 E-value=4.2e-07 Score=82.36 Aligned_cols=79 Identities=14% Similarity=0.094 Sum_probs=59.7
Q ss_pred CCcccccchhHHHHHHHHhcC--CCCcEEEEEEcCCCCChhHHHHHHhccccccccC---CeeEEEECCCCCCHHHHHHH
Q 047336 158 NRNTVGLDDRMEELLDLLIEG--PTQLSVVAILDSIGLDKTAFTAEAYNSSYVKHYF---DYLAWIPAPYQYDPDQILDT 232 (290)
Q Consensus 158 ~~~~vG~e~~~~~L~~~L~~~--~~~~~Vi~IvGmgGiGKTTLa~~vy~d~~v~~~F---~~~~wV~vs~~~~~~~ll~~ 232 (290)
..+++|++.+.+.|.+++... ......+.|+|++|+||||||+.+.+ .....| ...+|+..+...+...++..
T Consensus 19 p~~~~gr~~e~~~l~~~l~~~~~~~~~~~vli~G~~G~GKTtl~~~l~~--~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 96 (386)
T 2qby_A 19 PDELPHREDQIRKIASILAPLYREEKPNNIFIYGLTGTGKTAVVKFVLS--KLHKKFLGKFKHVYINTRQIDTPYRVLAD 96 (386)
T ss_dssp CSCCTTCHHHHHHHHHSSGGGGGTCCCCCEEEEECTTSSHHHHHHHHHH--HHHHHTCSSCEEEEEEHHHHCSHHHHHHH
T ss_pred CCCCCChHHHHHHHHHHHHHHHcCCCCCeEEEECCCCCCHHHHHHHHHH--HHHHHhcCCceEEEEECCCCCCHHHHHHH
Confidence 367999999999999998752 34466888999999999999999998 444443 24577776665666777777
Q ss_pred HHHHhh
Q 047336 233 VTWLSR 238 (290)
Q Consensus 233 Il~~l~ 238 (290)
++.++.
T Consensus 97 i~~~l~ 102 (386)
T 2qby_A 97 LLESLD 102 (386)
T ss_dssp HTTTTS
T ss_pred HHHHhC
Confidence 766664
No 11
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=98.24 E-value=1e-06 Score=78.73 Aligned_cols=71 Identities=8% Similarity=0.082 Sum_probs=54.5
Q ss_pred CCCcccccchhHHHHHHHHhcCCCCcEEEEEEcCCCCChhHHHHHHhccccccccCCeeEEEECCCC------CCHHHHH
Q 047336 157 KNRNTVGLDDRMEELLDLLIEGPTQLSVVAILDSIGLDKTAFTAEAYNSSYVKHYFDYLAWIPAPYQ------YDPDQIL 230 (290)
Q Consensus 157 ~~~~~vG~e~~~~~L~~~L~~~~~~~~Vi~IvGmgGiGKTTLa~~vy~d~~v~~~F~~~~wV~vs~~------~~~~~ll 230 (290)
....++||+.+.+.|.+++..+ +++.|+|++|+|||||++.+.+.. + .+|+.+... .+...++
T Consensus 10 ~~~~~~gR~~el~~L~~~l~~~----~~v~i~G~~G~GKT~Ll~~~~~~~------~-~~~~~~~~~~~~~~~~~~~~~~ 78 (350)
T 2qen_A 10 RREDIFDREEESRKLEESLENY----PLTLLLGIRRVGKSSLLRAFLNER------P-GILIDCRELYAERGHITREELI 78 (350)
T ss_dssp SGGGSCSCHHHHHHHHHHHHHC----SEEEEECCTTSSHHHHHHHHHHHS------S-EEEEEHHHHHHTTTCBCHHHHH
T ss_pred ChHhcCChHHHHHHHHHHHhcC----CeEEEECCCcCCHHHHHHHHHHHc------C-cEEEEeecccccccCCCHHHHH
Confidence 4467999999999999998753 689999999999999999999842 2 667766433 2566677
Q ss_pred HHHHHHhh
Q 047336 231 DTVTWLSR 238 (290)
Q Consensus 231 ~~Il~~l~ 238 (290)
+.+.+.+.
T Consensus 79 ~~l~~~l~ 86 (350)
T 2qen_A 79 KELQSTIS 86 (350)
T ss_dssp HHHHHHSC
T ss_pred HHHHHHHH
Confidence 77666553
No 12
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=98.09 E-value=4.8e-06 Score=74.45 Aligned_cols=70 Identities=10% Similarity=0.073 Sum_probs=52.1
Q ss_pred CCCcccccchhHHHHHHHHhcCCCCcEEEEEEcCCCCChhHHHHHHhccccccccCCeeEEEECCCC-----CCHHHHHH
Q 047336 157 KNRNTVGLDDRMEELLDLLIEGPTQLSVVAILDSIGLDKTAFTAEAYNSSYVKHYFDYLAWIPAPYQ-----YDPDQILD 231 (290)
Q Consensus 157 ~~~~~vG~e~~~~~L~~~L~~~~~~~~Vi~IvGmgGiGKTTLa~~vy~d~~v~~~F~~~~wV~vs~~-----~~~~~ll~ 231 (290)
....++||+.+.+.|.+ +.. +++.|+|++|+|||||++.+.+. ... ..+|+..... .+...++.
T Consensus 11 ~~~~~~gR~~el~~L~~-l~~-----~~v~i~G~~G~GKT~L~~~~~~~--~~~---~~~~~~~~~~~~~~~~~~~~~~~ 79 (357)
T 2fna_A 11 NRKDFFDREKEIEKLKG-LRA-----PITLVLGLRRTGKSSIIKIGINE--LNL---PYIYLDLRKFEERNYISYKDFLL 79 (357)
T ss_dssp SGGGSCCCHHHHHHHHH-TCS-----SEEEEEESTTSSHHHHHHHHHHH--HTC---CEEEEEGGGGTTCSCCCHHHHHH
T ss_pred CHHHhcChHHHHHHHHH-hcC-----CcEEEECCCCCCHHHHHHHHHHh--cCC---CEEEEEchhhccccCCCHHHHHH
Confidence 44679999999999999 653 58999999999999999999984 222 2578887642 34556666
Q ss_pred HHHHHh
Q 047336 232 TVTWLS 237 (290)
Q Consensus 232 ~Il~~l 237 (290)
.+.+.+
T Consensus 80 ~l~~~l 85 (357)
T 2fna_A 80 ELQKEI 85 (357)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 555544
No 13
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=97.84 E-value=1.6e-05 Score=64.11 Aligned_cols=45 Identities=16% Similarity=0.263 Sum_probs=38.3
Q ss_pred CcccccchhHHHHHHHHhcCCCCcEEEEEEcCCCCChhHHHHHHhcc
Q 047336 159 RNTVGLDDRMEELLDLLIEGPTQLSVVAILDSIGLDKTAFTAEAYNS 205 (290)
Q Consensus 159 ~~~vG~e~~~~~L~~~L~~~~~~~~Vi~IvGmgGiGKTTLa~~vy~d 205 (290)
.+++|+++..+.+.+++..+. ...+-|+|++|+||||||+.+.+.
T Consensus 22 ~~~~g~~~~~~~l~~~l~~~~--~~~~ll~G~~G~GKT~l~~~~~~~ 66 (195)
T 1jbk_A 22 DPVIGRDEEIRRTIQVLQRRT--KNNPVLIGEPGVGKTAIVEGLAQR 66 (195)
T ss_dssp CCCCSCHHHHHHHHHHHTSSS--SCEEEEECCTTSCHHHHHHHHHHH
T ss_pred cccccchHHHHHHHHHHhcCC--CCceEEECCCCCCHHHHHHHHHHH
Confidence 458999999999999987643 445679999999999999999873
No 14
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=97.81 E-value=4.2e-05 Score=63.16 Aligned_cols=69 Identities=14% Similarity=0.139 Sum_probs=47.6
Q ss_pred CcccccchhHHHHHHHHhcCCCCcEEEEEEcCCCCChhHHHHHHhccccccccCC-eeEEEECCCCCCHHHHH
Q 047336 159 RNTVGLDDRMEELLDLLIEGPTQLSVVAILDSIGLDKTAFTAEAYNSSYVKHYFD-YLAWIPAPYQYDPDQIL 230 (290)
Q Consensus 159 ~~~vG~e~~~~~L~~~L~~~~~~~~Vi~IvGmgGiGKTTLa~~vy~d~~v~~~F~-~~~wV~vs~~~~~~~ll 230 (290)
.+++|++...+.|.+++.... ...+-|+|++|+||||||+.+.+... ...+. ..+.+..+.......+.
T Consensus 17 ~~~~g~~~~~~~l~~~l~~~~--~~~~ll~G~~G~GKT~l~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 86 (226)
T 2chg_A 17 DEVVGQDEVIQRLKGYVERKN--IPHLLFSGPPGTGKTATAIALARDLF-GENWRDNFIEMNASDERGIDVVR 86 (226)
T ss_dssp GGCCSCHHHHHHHHHHHHTTC--CCCEEEECSTTSSHHHHHHHHHHHHH-GGGGGGGEEEEETTCTTCHHHHH
T ss_pred HHHcCcHHHHHHHHHHHhCCC--CCeEEEECCCCCCHHHHHHHHHHHHh-ccccccceEEeccccccChHHHH
Confidence 468999999999999998654 33388999999999999999987321 11222 23445555555544443
No 15
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=97.72 E-value=2.6e-05 Score=62.78 Aligned_cols=44 Identities=18% Similarity=0.237 Sum_probs=37.6
Q ss_pred CcccccchhHHHHHHHHhcCCCCcEEEEEEcCCCCChhHHHHHHhc
Q 047336 159 RNTVGLDDRMEELLDLLIEGPTQLSVVAILDSIGLDKTAFTAEAYN 204 (290)
Q Consensus 159 ~~~vG~e~~~~~L~~~L~~~~~~~~Vi~IvGmgGiGKTTLa~~vy~ 204 (290)
.+++|++...+.+.+++.... ...+-|+|++|+||||||+.+.+
T Consensus 22 ~~~~g~~~~~~~l~~~l~~~~--~~~vll~G~~G~GKT~la~~~~~ 65 (187)
T 2p65_A 22 DPVIGRDTEIRRAIQILSRRT--KNNPILLGDPGVGKTAIVEGLAI 65 (187)
T ss_dssp CCCCSCHHHHHHHHHHHTSSS--SCEEEEESCGGGCHHHHHHHHHH
T ss_pred chhhcchHHHHHHHHHHhCCC--CCceEEECCCCCCHHHHHHHHHH
Confidence 458999999999999987643 44567999999999999999987
No 16
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=97.66 E-value=4.4e-05 Score=68.22 Aligned_cols=80 Identities=8% Similarity=0.013 Sum_probs=58.6
Q ss_pred ccccchhHHHHHHHHhc--CCCCcEEEEEEcCCCCChhHHHHHHhccccccc---cC-C-eeEEEECCCCCCHHHHHHHH
Q 047336 161 TVGLDDRMEELLDLLIE--GPTQLSVVAILDSIGLDKTAFTAEAYNSSYVKH---YF-D-YLAWIPAPYQYDPDQILDTV 233 (290)
Q Consensus 161 ~vG~e~~~~~L~~~L~~--~~~~~~Vi~IvGmgGiGKTTLa~~vy~d~~v~~---~F-~-~~~wV~vs~~~~~~~ll~~I 233 (290)
+.||+++.++|...|.. .....+.+-|+|++|+|||++++.|.+...-.. .. . ..+.|.-..-.+...+...|
T Consensus 22 L~~Re~E~~~i~~~L~~~i~~~~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~~~v~INc~~~~t~~~~~~~I 101 (318)
T 3te6_A 22 LKSQVEDFTRIFLPIYDSLMSSQNKLFYITNADDSTKFQLVNDVMDELITSSARKELPIFDYIHIDALELAGMDALYEKI 101 (318)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCCCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCEEEEEEETTCCC--HHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCceEEEEEeccccCCHHHHHHHH
Confidence 88999999999998875 234567778999999999999999998432111 11 1 24566656667788999999
Q ss_pred HHHhhhc
Q 047336 234 TWLSRRN 240 (290)
Q Consensus 234 l~~l~~~ 240 (290)
++++.+.
T Consensus 102 ~~~L~g~ 108 (318)
T 3te6_A 102 WFAISKE 108 (318)
T ss_dssp HHHHSCC
T ss_pred HHHhcCC
Confidence 9999654
No 17
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=97.64 E-value=4.9e-05 Score=63.51 Aligned_cols=46 Identities=17% Similarity=0.167 Sum_probs=39.0
Q ss_pred CcccccchhHHHHHHHHhcCCCCcEEEEEEcCCCCChhHHHHHHhcc
Q 047336 159 RNTVGLDDRMEELLDLLIEGPTQLSVVAILDSIGLDKTAFTAEAYNS 205 (290)
Q Consensus 159 ~~~vG~e~~~~~L~~~L~~~~~~~~Vi~IvGmgGiGKTTLa~~vy~d 205 (290)
.+++|++..++.|..++..+. ....+.|+|++|+||||||+.+.+.
T Consensus 23 ~~~~g~~~~~~~l~~~l~~~~-~~~~~ll~G~~G~GKT~l~~~~~~~ 68 (250)
T 1njg_A 23 ADVVGQEHVLTALANGLSLGR-IHHAYLFSGTRGVGKTSIARLLAKG 68 (250)
T ss_dssp GGCCSCHHHHHHHHHHHHHTC-CCSEEEEECSTTSCHHHHHHHHHHH
T ss_pred HHHhCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 469999999999999998653 2347889999999999999999873
No 18
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.43 E-value=0.00015 Score=63.84 Aligned_cols=75 Identities=12% Similarity=0.102 Sum_probs=51.2
Q ss_pred CcccccchhHHHHHHHHhcCCCCcEEEEEEcCCCCChhHHHHHHhccccccc-cCC-eeEEEECCCCCCHHHHHHHHHHH
Q 047336 159 RNTVGLDDRMEELLDLLIEGPTQLSVVAILDSIGLDKTAFTAEAYNSSYVKH-YFD-YLAWIPAPYQYDPDQILDTVTWL 236 (290)
Q Consensus 159 ~~~vG~e~~~~~L~~~L~~~~~~~~Vi~IvGmgGiGKTTLa~~vy~d~~v~~-~F~-~~~wV~vs~~~~~~~ll~~Il~~ 236 (290)
.+++|++...+.|.+++..+. .+.+-++|++|+||||+|+.+.+. ... .+. ..+++..+..... ..+++++..
T Consensus 21 ~~~~g~~~~~~~l~~~l~~~~--~~~~ll~G~~G~GKt~la~~l~~~--l~~~~~~~~~~~~~~~~~~~~-~~i~~~~~~ 95 (323)
T 1sxj_B 21 SDIVGNKETIDRLQQIAKDGN--MPHMIISGMPGIGKTTSVHCLAHE--LLGRSYADGVLELNASDDRGI-DVVRNQIKH 95 (323)
T ss_dssp GGCCSCTHHHHHHHHHHHSCC--CCCEEEECSTTSSHHHHHHHHHHH--HHGGGHHHHEEEECTTSCCSH-HHHHTHHHH
T ss_pred HHHHCCHHHHHHHHHHHHcCC--CCeEEEECcCCCCHHHHHHHHHHH--hcCCcccCCEEEecCccccCh-HHHHHHHHH
Confidence 468999999999999998654 333889999999999999999873 211 122 2445555554443 334555555
Q ss_pred hh
Q 047336 237 SR 238 (290)
Q Consensus 237 l~ 238 (290)
+.
T Consensus 96 ~~ 97 (323)
T 1sxj_B 96 FA 97 (323)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 19
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=97.31 E-value=0.00016 Score=56.70 Aligned_cols=45 Identities=11% Similarity=0.121 Sum_probs=34.7
Q ss_pred cccccchhHHHHHHHHhc-CCCCcEEEEEEcCCCCChhHHHHHHhcc
Q 047336 160 NTVGLDDRMEELLDLLIE-GPTQLSVVAILDSIGLDKTAFTAEAYNS 205 (290)
Q Consensus 160 ~~vG~e~~~~~L~~~L~~-~~~~~~Vi~IvGmgGiGKTTLa~~vy~d 205 (290)
+++|......++.+.+.. ...... |-|+|..|+|||+||+.+++.
T Consensus 2 ~iiG~s~~~~~~~~~~~~~a~~~~~-vll~G~~GtGKt~lA~~i~~~ 47 (145)
T 3n70_A 2 ELIGRSEWINQYRRRLQQLSETDIA-VWLYGAPGTGRMTGARYLHQF 47 (145)
T ss_dssp --CCSSHHHHHHHHHHHHHTTCCSC-EEEESSTTSSHHHHHHHHHHS
T ss_pred CceeCCHHHHHHHHHHHHHhCCCCC-EEEECCCCCCHHHHHHHHHHh
Confidence 578999999999988864 222233 469999999999999999983
No 20
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=97.29 E-value=0.00023 Score=62.81 Aligned_cols=45 Identities=16% Similarity=0.231 Sum_probs=38.6
Q ss_pred CcccccchhHHHHHHHHhcCCCCcEEEEEEcCCCCChhHHHHHHhcc
Q 047336 159 RNTVGLDDRMEELLDLLIEGPTQLSVVAILDSIGLDKTAFTAEAYNS 205 (290)
Q Consensus 159 ~~~vG~e~~~~~L~~~L~~~~~~~~Vi~IvGmgGiGKTTLa~~vy~d 205 (290)
.+++|++..++.|.+++..+. .+.+-++|++|+||||+|+.+.+.
T Consensus 25 ~~~~g~~~~~~~l~~~l~~~~--~~~~ll~G~~G~GKT~la~~l~~~ 69 (327)
T 1iqp_A 25 DDIVGQEHIVKRLKHYVKTGS--MPHLLFAGPPGVGKTTAALALARE 69 (327)
T ss_dssp TTCCSCHHHHHHHHHHHHHTC--CCEEEEESCTTSSHHHHHHHHHHH
T ss_pred HHhhCCHHHHHHHHHHHHcCC--CCeEEEECcCCCCHHHHHHHHHHH
Confidence 458999999999999988764 444889999999999999999883
No 21
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=97.14 E-value=0.00035 Score=60.73 Aligned_cols=48 Identities=15% Similarity=0.189 Sum_probs=38.4
Q ss_pred CCcccccchhHHHHHHHHhcC-----------CCCcEEEEEEcCCCCChhHHHHHHhcc
Q 047336 158 NRNTVGLDDRMEELLDLLIEG-----------PTQLSVVAILDSIGLDKTAFTAEAYNS 205 (290)
Q Consensus 158 ~~~~vG~e~~~~~L~~~L~~~-----------~~~~~Vi~IvGmgGiGKTTLa~~vy~d 205 (290)
-.+++|.+..++.|.+.+... -....-+-|+|++|+||||||+.+.+.
T Consensus 16 ~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la~~la~~ 74 (285)
T 3h4m_A 16 YEDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVATE 74 (285)
T ss_dssp GGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHH
Confidence 356999999999999887431 123456889999999999999999883
No 22
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=97.13 E-value=0.0005 Score=56.56 Aligned_cols=52 Identities=13% Similarity=0.013 Sum_probs=34.4
Q ss_pred hHHHHHHHHhcCCC--CcEEEEEEcCCCCChhHHHHHHhccccccccCCeeEEEEC
Q 047336 167 RMEELLDLLIEGPT--QLSVVAILDSIGLDKTAFTAEAYNSSYVKHYFDYLAWIPA 220 (290)
Q Consensus 167 ~~~~L~~~L~~~~~--~~~Vi~IvGmgGiGKTTLa~~vy~d~~v~~~F~~~~wV~v 220 (290)
..+.+..++..... ....+-|+|++|+||||||+.+++ .........++++.
T Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~l~G~~GtGKT~la~~i~~--~~~~~~~~~~~~~~ 90 (202)
T 2w58_A 37 AIRFAERFVAEYEPGKKMKGLYLHGSFGVGKTYLLAAIAN--ELAKRNVSSLIVYV 90 (202)
T ss_dssp HHHHHHHHHHHCCSSCCCCEEEEECSTTSSHHHHHHHHHH--HHHTTTCCEEEEEH
T ss_pred HHHHHHHHHHHhhhccCCCeEEEECCCCCCHHHHHHHHHH--HHHHcCCeEEEEEh
Confidence 34445555554322 126788999999999999999998 44444445666654
No 23
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=97.10 E-value=0.00029 Score=62.90 Aligned_cols=46 Identities=15% Similarity=0.165 Sum_probs=38.6
Q ss_pred CcccccchhHHHHHHHHhcC---CCCcEEEEEEcCCCCChhHHHHHHhc
Q 047336 159 RNTVGLDDRMEELLDLLIEG---PTQLSVVAILDSIGLDKTAFTAEAYN 204 (290)
Q Consensus 159 ~~~vG~e~~~~~L~~~L~~~---~~~~~Vi~IvGmgGiGKTTLa~~vy~ 204 (290)
.+++|.+..++.+..++... ......+-|+|++|+||||||+.+.+
T Consensus 29 ~~iiG~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~ia~ 77 (338)
T 3pfi_A 29 DGYIGQESIKKNLNVFIAAAKKRNECLDHILFSGPAGLGKTTLANIISY 77 (338)
T ss_dssp GGCCSCHHHHHHHHHHHHHHHHTTSCCCCEEEECSTTSSHHHHHHHHHH
T ss_pred HHhCChHHHHHHHHHHHHHHHhcCCCCCeEEEECcCCCCHHHHHHHHHH
Confidence 56999999999999988752 33455678999999999999999987
No 24
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=97.06 E-value=0.00067 Score=56.80 Aligned_cols=58 Identities=10% Similarity=0.075 Sum_probs=36.4
Q ss_pred ccccc---chhHHHHHHHHhcCCCCcEEEEEEcCCCCChhHHHHHHhccccccccCCeeEEEECC
Q 047336 160 NTVGL---DDRMEELLDLLIEGPTQLSVVAILDSIGLDKTAFTAEAYNSSYVKHYFDYLAWIPAP 221 (290)
Q Consensus 160 ~~vG~---e~~~~~L~~~L~~~~~~~~Vi~IvGmgGiGKTTLa~~vy~d~~v~~~F~~~~wV~vs 221 (290)
+++|. +...+.+..++... ....+-|+|++|+||||||+.+.+ ..........|++.+
T Consensus 29 ~~~~~~~~~~~~~~l~~~~~~~--~~~~~ll~G~~G~GKT~la~~l~~--~~~~~~~~~~~~~~~ 89 (242)
T 3bos_A 29 SYYPAAGNDELIGALKSAASGD--GVQAIYLWGPVKSGRTHLIHAACA--RANELERRSFYIPLG 89 (242)
T ss_dssp TSCC--CCHHHHHHHHHHHHTC--SCSEEEEECSTTSSHHHHHHHHHH--HHHHTTCCEEEEEGG
T ss_pred hccCCCCCHHHHHHHHHHHhCC--CCCeEEEECCCCCCHHHHHHHHHH--HHHHcCCeEEEEEHH
Confidence 45652 24445555554433 356778999999999999999987 333223345566554
No 25
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=97.06 E-value=0.00065 Score=60.00 Aligned_cols=46 Identities=17% Similarity=0.200 Sum_probs=37.4
Q ss_pred CcccccchhHHHHHHHHhc---CCCCcEEEEEEcCCCCChhHHHHHHhc
Q 047336 159 RNTVGLDDRMEELLDLLIE---GPTQLSVVAILDSIGLDKTAFTAEAYN 204 (290)
Q Consensus 159 ~~~vG~e~~~~~L~~~L~~---~~~~~~Vi~IvGmgGiGKTTLa~~vy~ 204 (290)
.+++|.+..+..+..++.. .......+-|+|++|+||||||+.+++
T Consensus 12 ~~~ig~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~i~~ 60 (324)
T 1hqc_A 12 DEYIGQERLKQKLRVYLEAAKARKEPLEHLLLFGPPGLGKTTLAHVIAH 60 (324)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHHCSCCCCCEEECCTTCCCHHHHHHHHH
T ss_pred HHhhCHHHHHHHHHHHHHHHHccCCCCCcEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999888863 122345677999999999999999988
No 26
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=97.04 E-value=0.00049 Score=57.18 Aligned_cols=37 Identities=16% Similarity=0.161 Sum_probs=28.2
Q ss_pred HHHHHHHHhcCCCCcEEEEEEcCCCCChhHHHHHHhc
Q 047336 168 MEELLDLLIEGPTQLSVVAILDSIGLDKTAFTAEAYN 204 (290)
Q Consensus 168 ~~~L~~~L~~~~~~~~Vi~IvGmgGiGKTTLa~~vy~ 204 (290)
.++|.+.+......-.+|+|+|..|.|||||++.+..
T Consensus 8 ~~~~~~~~~~~~~~g~~v~I~G~sGsGKSTl~~~l~~ 44 (208)
T 3c8u_A 8 CQGVLERLDPRQPGRQLVALSGAPGSGKSTLSNPLAA 44 (208)
T ss_dssp HHHHHHHSCTTCCSCEEEEEECCTTSCTHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3455555543334578999999999999999998876
No 27
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=97.04 E-value=0.00051 Score=60.62 Aligned_cols=47 Identities=28% Similarity=0.277 Sum_probs=37.8
Q ss_pred CcccccchhHHHHHHHHhc-----------CCCCcEEEEEEcCCCCChhHHHHHHhcc
Q 047336 159 RNTVGLDDRMEELLDLLIE-----------GPTQLSVVAILDSIGLDKTAFTAEAYNS 205 (290)
Q Consensus 159 ~~~vG~e~~~~~L~~~L~~-----------~~~~~~Vi~IvGmgGiGKTTLa~~vy~d 205 (290)
.+++|.+..++.|.+++.. +-.....+-++|++|+||||||+.+.+.
T Consensus 15 ~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la~ala~~ 72 (301)
T 3cf0_A 15 EDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANE 72 (301)
T ss_dssp GGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHHHHHHHH
Confidence 4699999999998887752 1133557889999999999999999983
No 28
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=97.04 E-value=0.00019 Score=56.18 Aligned_cols=46 Identities=9% Similarity=0.027 Sum_probs=33.4
Q ss_pred CcccccchhHHHHHHHHhcC-CCCcEEEEEEcCCCCChhHHHHHHhcc
Q 047336 159 RNTVGLDDRMEELLDLLIEG-PTQLSVVAILDSIGLDKTAFTAEAYNS 205 (290)
Q Consensus 159 ~~~vG~e~~~~~L~~~L~~~-~~~~~Vi~IvGmgGiGKTTLa~~vy~d 205 (290)
.+++|.+..+.++.+.+..- ..... |-|+|..|+|||++|+.+++.
T Consensus 4 ~~~iG~s~~~~~l~~~~~~~~~~~~~-vll~G~~GtGKt~lA~~i~~~ 50 (143)
T 3co5_A 4 FDKLGNSAAIQEMNREVEAAAKRTSP-VFLTGEAGSPFETVARYFHKN 50 (143)
T ss_dssp ----CCCHHHHHHHHHHHHHHTCSSC-EEEEEETTCCHHHHHGGGCCT
T ss_pred cCceeCCHHHHHHHHHHHHHhCCCCc-EEEECCCCccHHHHHHHHHHh
Confidence 35889999999988887641 12233 558999999999999999983
No 29
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.03 E-value=0.00043 Score=61.82 Aligned_cols=45 Identities=16% Similarity=0.107 Sum_probs=38.0
Q ss_pred CcccccchhHHHHHHHHhcCCCCcEEEEEEcCCCCChhHHHHHHhcc
Q 047336 159 RNTVGLDDRMEELLDLLIEGPTQLSVVAILDSIGLDKTAFTAEAYNS 205 (290)
Q Consensus 159 ~~~vG~e~~~~~L~~~L~~~~~~~~Vi~IvGmgGiGKTTLa~~vy~d 205 (290)
.+++|.++.++.|..++..+. .+.+-++|++|+||||||+.+.+.
T Consensus 37 ~~i~g~~~~~~~l~~~l~~~~--~~~~ll~G~~G~GKT~la~~la~~ 81 (353)
T 1sxj_D 37 DEVTAQDHAVTVLKKTLKSAN--LPHMLFYGPPGTGKTSTILALTKE 81 (353)
T ss_dssp TTCCSCCTTHHHHHHHTTCTT--CCCEEEECSTTSSHHHHHHHHHHH
T ss_pred HHhhCCHHHHHHHHHHHhcCC--CCEEEEECCCCCCHHHHHHHHHHH
Confidence 468999999999999988654 223789999999999999999873
No 30
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=97.00 E-value=0.00057 Score=55.22 Aligned_cols=25 Identities=16% Similarity=0.236 Sum_probs=22.1
Q ss_pred CcEEEEEEcCCCCChhHHHHHHhcc
Q 047336 181 QLSVVAILDSIGLDKTAFTAEAYNS 205 (290)
Q Consensus 181 ~~~Vi~IvGmgGiGKTTLa~~vy~d 205 (290)
.-..+.|+|+.|+|||||++.+.+.
T Consensus 37 ~g~~~~l~G~~G~GKTtL~~~i~~~ 61 (180)
T 3ec2_A 37 EGKGLTFVGSPGVGKTHLAVATLKA 61 (180)
T ss_dssp GCCEEEECCSSSSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHH
Confidence 3568899999999999999999883
No 31
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=96.98 E-value=0.00064 Score=63.89 Aligned_cols=44 Identities=14% Similarity=0.274 Sum_probs=37.0
Q ss_pred CcccccchhHHHHHHHHhcCCCCcEEEEEEcCCCCChhHHHHHHhc
Q 047336 159 RNTVGLDDRMEELLDLLIEGPTQLSVVAILDSIGLDKTAFTAEAYN 204 (290)
Q Consensus 159 ~~~vG~e~~~~~L~~~L~~~~~~~~Vi~IvGmgGiGKTTLa~~vy~ 204 (290)
+.++|++..++.+...|.... ..-+-++|.+|+||||||+.+.+
T Consensus 180 d~iiGr~~~i~~l~~~l~r~~--~~~~LL~G~pG~GKT~la~~la~ 223 (468)
T 3pxg_A 180 DPVIGRSKEIQRVIEVLSRRT--KNNPVLIGEPGVGKTAIAEGLAQ 223 (468)
T ss_dssp CCCCCCHHHHHHHHHHHHCSS--SCEEEEESCTTTTTHHHHHHHHH
T ss_pred CCccCcHHHHHHHHHHHhccC--CCCeEEECCCCCCHHHHHHHHHH
Confidence 459999999999999997643 23346899999999999999887
No 32
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=96.98 E-value=0.00048 Score=60.49 Aligned_cols=45 Identities=13% Similarity=0.118 Sum_probs=35.3
Q ss_pred cccccchhHHHHHHHHhc-------------CCCCcEEEEEEcCCCCChhHHHHHHhc
Q 047336 160 NTVGLDDRMEELLDLLIE-------------GPTQLSVVAILDSIGLDKTAFTAEAYN 204 (290)
Q Consensus 160 ~~vG~e~~~~~L~~~L~~-------------~~~~~~Vi~IvGmgGiGKTTLa~~vy~ 204 (290)
+++|.+..++.|.+++.. .......+-|+|++|+||||||+.+.+
T Consensus 32 ~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~vll~G~~GtGKT~la~~la~ 89 (309)
T 3syl_A 32 ELIGLKPVKDRIRETAALLLVERARQKLGLAHETPTLHMSFTGNPGTGKTTVALKMAG 89 (309)
T ss_dssp HSSSCHHHHHHHHHHHHHHHHHHHHHHHTCCSSCCCCEEEEEECTTSSHHHHHHHHHH
T ss_pred HccChHHHHHHHHHHHHHHHhHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHH
Confidence 589999999988877642 123345678999999999999987766
No 33
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=96.98 E-value=0.00046 Score=59.00 Aligned_cols=46 Identities=13% Similarity=0.153 Sum_probs=35.3
Q ss_pred CcccccchhHHHHHHHHhc---CC-------CCcEEEEEEcCCCCChhHHHHHHhc
Q 047336 159 RNTVGLDDRMEELLDLLIE---GP-------TQLSVVAILDSIGLDKTAFTAEAYN 204 (290)
Q Consensus 159 ~~~vG~e~~~~~L~~~L~~---~~-------~~~~Vi~IvGmgGiGKTTLa~~vy~ 204 (290)
.+++|.+..++.|.+++.. .. ....-+-++|++|+||||||+.+.+
T Consensus 6 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~vll~G~~GtGKT~la~~la~ 61 (262)
T 2qz4_A 6 KDVAGMHEAKLEVREFVDYLKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVAT 61 (262)
T ss_dssp TSSCSCHHHHHHHHHHHHHHHCCC------CCCCCEEEEESCTTSSHHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHHHHHCHHHHHHcCCCCCceEEEECCCCCCHHHHHHHHHH
Confidence 4689999888888776532 11 2334567999999999999999988
No 34
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=96.95 E-value=0.00084 Score=55.48 Aligned_cols=41 Identities=20% Similarity=0.160 Sum_probs=32.5
Q ss_pred cchhHHHHHHHHhcC-CCCcEEEEEEcCCCCChhHHHHHHhc
Q 047336 164 LDDRMEELLDLLIEG-PTQLSVVAILDSIGLDKTAFTAEAYN 204 (290)
Q Consensus 164 ~e~~~~~L~~~L~~~-~~~~~Vi~IvGmgGiGKTTLa~~vy~ 204 (290)
++...+.|.+++... .....+|+|.|..|+|||||++.+..
T Consensus 3 ~~~~~~~l~~~~~~~~~~~~~~i~i~G~~GsGKstl~~~l~~ 44 (201)
T 1rz3_A 3 LRDRIDFLCKTILAIKTAGRLVLGIDGLSRSGKTTLANQLSQ 44 (201)
T ss_dssp HHHHHHHHHHHHHTSCCSSSEEEEEEECTTSSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 345667788877753 34568999999999999999998876
No 35
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=96.90 E-value=0.00058 Score=59.71 Aligned_cols=47 Identities=15% Similarity=0.176 Sum_probs=37.5
Q ss_pred CcccccchhHHHHHHHHhcC----------CCCcEEEEEEcCCCCChhHHHHHHhcc
Q 047336 159 RNTVGLDDRMEELLDLLIEG----------PTQLSVVAILDSIGLDKTAFTAEAYNS 205 (290)
Q Consensus 159 ~~~vG~e~~~~~L~~~L~~~----------~~~~~Vi~IvGmgGiGKTTLa~~vy~d 205 (290)
.+++|.+..++.|.+++... ......+-|+|++|+||||||+.+.+.
T Consensus 21 ~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~la~~ 77 (297)
T 3b9p_A 21 TDIAGQDVAKQALQEMVILPSVRPELFTGLRAPAKGLLLFGPPGNGKTLLARAVATE 77 (297)
T ss_dssp GGSCCCHHHHHHHHHHTHHHHHCGGGSCGGGCCCSEEEEESSSSSCHHHHHHHHHHH
T ss_pred HHhCChHHHHHHHHHHHHhhhhCHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHH
Confidence 46999999999999887431 112457789999999999999999883
No 36
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=96.90 E-value=0.00064 Score=60.51 Aligned_cols=47 Identities=17% Similarity=0.232 Sum_probs=37.5
Q ss_pred CcccccchhHHHHHHHHhc----------CCCCcEEEEEEcCCCCChhHHHHHHhcc
Q 047336 159 RNTVGLDDRMEELLDLLIE----------GPTQLSVVAILDSIGLDKTAFTAEAYNS 205 (290)
Q Consensus 159 ~~~vG~e~~~~~L~~~L~~----------~~~~~~Vi~IvGmgGiGKTTLa~~vy~d 205 (290)
.+++|.+..++.|.+.+.. ......-+-++|++|+|||+||+.+.+.
T Consensus 18 ~di~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~ 74 (322)
T 3eie_A 18 EDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATE 74 (322)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCGGGCCTTCCCCCEEEEECSSSSCHHHHHHHHHHH
T ss_pred HHhcChHHHHHHHHHHHHHHHhCHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHH
Confidence 5699999999999988731 1122456789999999999999999883
No 37
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=96.88 E-value=0.00092 Score=60.17 Aligned_cols=47 Identities=23% Similarity=0.227 Sum_probs=35.9
Q ss_pred CcccccchhHHHH---HHHHhcCCCCcEEEEEEcCCCCChhHHHHHHhcc
Q 047336 159 RNTVGLDDRMEEL---LDLLIEGPTQLSVVAILDSIGLDKTAFTAEAYNS 205 (290)
Q Consensus 159 ~~~vG~e~~~~~L---~~~L~~~~~~~~Vi~IvGmgGiGKTTLa~~vy~d 205 (290)
++++|.+..++.+ .+.+..+......+-|+|++|+||||||+.+.+.
T Consensus 44 ~~ivG~~~~~~~l~~l~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~ 93 (368)
T 3uk6_A 44 QGMVGQLAARRAAGVVLEMIREGKIAGRAVLIAGQPGTGKTAIAMGMAQA 93 (368)
T ss_dssp TTEESCHHHHHHHHHHHHHHHTTCCTTCEEEEEESTTSSHHHHHHHHHHH
T ss_pred hhccChHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCCCHHHHHHHHHHH
Confidence 4699999887764 4444444333457889999999999999999883
No 38
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=96.87 E-value=0.00065 Score=60.85 Aligned_cols=46 Identities=20% Similarity=0.175 Sum_probs=35.7
Q ss_pred CcccccchhHHHHHHHHhcC---CCCcEEEEEEcCCCCChhHHHHHHhc
Q 047336 159 RNTVGLDDRMEELLDLLIEG---PTQLSVVAILDSIGLDKTAFTAEAYN 204 (290)
Q Consensus 159 ~~~vG~e~~~~~L~~~L~~~---~~~~~Vi~IvGmgGiGKTTLa~~vy~ 204 (290)
++++|.+..++.+-..+..+ ......+.++|+.|+||||||+.+.+
T Consensus 25 ~~~~g~~~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~ 73 (334)
T 1in4_A 25 DEFIGQENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIAS 73 (334)
T ss_dssp GGCCSCHHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHH
T ss_pred HHccCcHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHH
Confidence 45788887777776666532 23456789999999999999999987
No 39
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=96.84 E-value=0.00052 Score=54.47 Aligned_cols=20 Identities=25% Similarity=0.280 Sum_probs=18.8
Q ss_pred EEEEEEcCCCCChhHHHHHH
Q 047336 183 SVVAILDSIGLDKTAFTAEA 202 (290)
Q Consensus 183 ~Vi~IvGmgGiGKTTLa~~v 202 (290)
.+|.|.|++|+||||+|+.+
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 47999999999999999999
No 40
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=96.84 E-value=0.0065 Score=50.14 Aligned_cols=47 Identities=9% Similarity=0.137 Sum_probs=35.0
Q ss_pred CCcEEEEEEcCCCCChhHHHHHHhccccccccCCeeEEEECCCCCCHHHHHH
Q 047336 180 TQLSVVAILDSIGLDKTAFTAEAYNSSYVKHYFDYLAWIPAPYQYDPDQILD 231 (290)
Q Consensus 180 ~~~~Vi~IvGmgGiGKTTLa~~vy~d~~v~~~F~~~~wV~vs~~~~~~~ll~ 231 (290)
..-.++.|+|.+|+|||||+..+.. ..=..++|++....++...+.+
T Consensus 18 ~~G~~~~i~G~~GsGKTtl~~~l~~-----~~~~~v~~i~~~~~~~~~~~~~ 64 (220)
T 2cvh_A 18 APGVLTQVYGPYASGKTTLALQTGL-----LSGKKVAYVDTEGGFSPERLVQ 64 (220)
T ss_dssp CTTSEEEEECSTTSSHHHHHHHHHH-----HHCSEEEEEESSCCCCHHHHHH
T ss_pred cCCEEEEEECCCCCCHHHHHHHHHH-----HcCCcEEEEECCCCCCHHHHHH
Confidence 3456899999999999999998876 1124578888777666655543
No 41
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=96.84 E-value=0.0012 Score=59.37 Aligned_cols=46 Identities=17% Similarity=0.176 Sum_probs=37.9
Q ss_pred CcccccchhHHHHHHHHhcCCCCcEEEEEEcCCCCChhHHHHHHhcc
Q 047336 159 RNTVGLDDRMEELLDLLIEGPTQLSVVAILDSIGLDKTAFTAEAYNS 205 (290)
Q Consensus 159 ~~~vG~e~~~~~L~~~L~~~~~~~~Vi~IvGmgGiGKTTLa~~vy~d 205 (290)
.+++|++..++.|.+++..+.. ...+-|+|+.|+||||||+.+.+.
T Consensus 16 ~~~vg~~~~~~~L~~~l~~~~~-~~~~ll~G~~G~GKT~la~~la~~ 61 (373)
T 1jr3_A 16 ADVVGQEHVLTALANGLSLGRI-HHAYLFSGTRGVGKTSIARLLAKG 61 (373)
T ss_dssp TTSCSCHHHHHHHHHHHHHTCC-CSEEEEESCTTSSHHHHHHHHHHH
T ss_pred hhccCcHHHHHHHHHHHHhCCC-CeEEEEECCCCCCHHHHHHHHHHH
Confidence 3599999999999999976532 236679999999999999998763
No 42
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=96.82 E-value=0.00074 Score=63.11 Aligned_cols=44 Identities=16% Similarity=0.214 Sum_probs=36.7
Q ss_pred CcccccchhH---HHHHHHHhcCCCCcEEEEEEcCCCCChhHHHHHHhc
Q 047336 159 RNTVGLDDRM---EELLDLLIEGPTQLSVVAILDSIGLDKTAFTAEAYN 204 (290)
Q Consensus 159 ~~~vG~e~~~---~~L~~~L~~~~~~~~Vi~IvGmgGiGKTTLa~~vy~ 204 (290)
.+++|.+..+ ..|...+..+. +..+-++|++|+||||||+.+.+
T Consensus 26 ~~ivGq~~~~~~~~~L~~~i~~~~--~~~vLL~GppGtGKTtlAr~ia~ 72 (447)
T 3pvs_A 26 AQYIGQQHLLAAGKPLPRAIEAGH--LHSMILWGPPGTGKTTLAEVIAR 72 (447)
T ss_dssp TTCCSCHHHHSTTSHHHHHHHHTC--CCEEEEECSTTSSHHHHHHHHHH
T ss_pred HHhCCcHHHHhchHHHHHHHHcCC--CcEEEEECCCCCcHHHHHHHHHH
Confidence 4689988887 67777777654 56788999999999999999998
No 43
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.81 E-value=0.0011 Score=63.07 Aligned_cols=47 Identities=13% Similarity=0.141 Sum_probs=39.2
Q ss_pred CcccccchhHHHHHHHHhcC---------------CCCcEEEEEEcCCCCChhHHHHHHhcc
Q 047336 159 RNTVGLDDRMEELLDLLIEG---------------PTQLSVVAILDSIGLDKTAFTAEAYNS 205 (290)
Q Consensus 159 ~~~vG~e~~~~~L~~~L~~~---------------~~~~~Vi~IvGmgGiGKTTLa~~vy~d 205 (290)
.+++|.+..++.|.+||... ....+.+-|+|++|+||||||+.+.+.
T Consensus 39 ~dliG~~~~~~~L~~~l~~~~~~~~~~~~~~g~~~~~~~~~lLL~GppGtGKTtla~~la~~ 100 (516)
T 1sxj_A 39 QQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQE 100 (516)
T ss_dssp GGCCSCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHHH
T ss_pred HHhcCCHHHHHHHHHHHHHhHhhchhhccccCccCCCCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 56999999999999999751 013468889999999999999999883
No 44
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=96.81 E-value=0.0012 Score=58.00 Aligned_cols=38 Identities=21% Similarity=0.192 Sum_probs=28.6
Q ss_pred hHHHHHHHHhc----CCCCcEEEEEEcCCCCChhHHHHHHhc
Q 047336 167 RMEELLDLLIE----GPTQLSVVAILDSIGLDKTAFTAEAYN 204 (290)
Q Consensus 167 ~~~~L~~~L~~----~~~~~~Vi~IvGmgGiGKTTLa~~vy~ 204 (290)
..+.|.+.+.. ......+|+|+|..|+||||||+.+..
T Consensus 12 ~~~~l~~~i~~~~~~~~~~~~ii~I~G~sGsGKSTla~~L~~ 53 (290)
T 1odf_A 12 TIEFLDKYIPEWFETGNKCPLFIFFSGPQGSGKSFTSIQIYN 53 (290)
T ss_dssp HHHHHHHHHHHHHTTTCCSCEEEEEECCTTSSHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhccCCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 44455554443 345678999999999999999998866
No 45
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=96.80 E-value=0.00074 Score=61.08 Aligned_cols=46 Identities=9% Similarity=0.076 Sum_probs=37.2
Q ss_pred CcccccchhHHHHHHHHhc----------CCCCcEEEEEEcCCCCChhHHHHHHhc
Q 047336 159 RNTVGLDDRMEELLDLLIE----------GPTQLSVVAILDSIGLDKTAFTAEAYN 204 (290)
Q Consensus 159 ~~~vG~e~~~~~L~~~L~~----------~~~~~~Vi~IvGmgGiGKTTLa~~vy~ 204 (290)
.+++|.+..++.|.+++.. ......-+-|+|++|+||||||+.+.+
T Consensus 84 ~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~ 139 (357)
T 3d8b_A 84 EDIAGVEFAKATIKEIVVWPMLRPDIFTGLRGPPKGILLFGPPGTGKTLIGKCIAS 139 (357)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGSCCSEEEEESSTTSSHHHHHHHHHH
T ss_pred HHhCChHHHHHHHHHHHHHHhhChHhHhhccCCCceEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999888742 112355678999999999999999987
No 46
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=96.80 E-value=0.00089 Score=58.70 Aligned_cols=44 Identities=18% Similarity=0.192 Sum_probs=37.1
Q ss_pred CcccccchhHHHHHHHHhcCCCCcEEEEEEcCCCCChhHHHHHHhc
Q 047336 159 RNTVGLDDRMEELLDLLIEGPTQLSVVAILDSIGLDKTAFTAEAYN 204 (290)
Q Consensus 159 ~~~vG~e~~~~~L~~~L~~~~~~~~Vi~IvGmgGiGKTTLa~~vy~ 204 (290)
.+++|.+..++.|.+++..+. .+.+-++|++|+||||+|+.+.+
T Consensus 17 ~~~~g~~~~~~~l~~~l~~~~--~~~~ll~G~~G~GKt~la~~l~~ 60 (319)
T 2chq_A 17 DEVVGQDEVIQRLKGYVERKN--IPHLLFSGPPGTGKTATAIALAR 60 (319)
T ss_dssp GGSCSCHHHHHHHHTTTTTTC--CCCEEEESSSSSSHHHHHHHHHH
T ss_pred HHHhCCHHHHHHHHHHHhCCC--CCeEEEECcCCcCHHHHHHHHHH
Confidence 458999999999998887653 33378999999999999999987
No 47
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=96.79 E-value=0.0014 Score=56.40 Aligned_cols=47 Identities=17% Similarity=0.132 Sum_probs=33.4
Q ss_pred CcccccchhHHHHHHHHhcCCCCcEEEEEEcCCCCChhHHHHHHhcc
Q 047336 159 RNTVGLDDRMEELLDLLIEGPTQLSVVAILDSIGLDKTAFTAEAYNS 205 (290)
Q Consensus 159 ~~~vG~e~~~~~L~~~L~~~~~~~~Vi~IvGmgGiGKTTLa~~vy~d 205 (290)
.+++|.+.....+.+.+..-...-.-+-|+|..|+|||+||+.+++.
T Consensus 6 ~~~ig~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKt~la~~i~~~ 52 (265)
T 2bjv_A 6 DNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYL 52 (265)
T ss_dssp ----CCCHHHHHHHHHHHHHTTSCSCEEEECCTTSCHHHHHHHHHHT
T ss_pred ccceeCCHHHHHHHHHHHHHhCCCCCEEEECCCCCcHHHHHHHHHHh
Confidence 34789999999988877642111234568999999999999999983
No 48
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=96.78 E-value=0.001 Score=56.99 Aligned_cols=47 Identities=21% Similarity=0.236 Sum_probs=34.4
Q ss_pred CcccccchhHHHHHHHHh---cC-------CCCcEEEEEEcCCCCChhHHHHHHhcc
Q 047336 159 RNTVGLDDRMEELLDLLI---EG-------PTQLSVVAILDSIGLDKTAFTAEAYNS 205 (290)
Q Consensus 159 ~~~vG~e~~~~~L~~~L~---~~-------~~~~~Vi~IvGmgGiGKTTLa~~vy~d 205 (290)
.+++|.+..+++|.+.+. .. .....-+.|+|+.|+||||||+.+.+.
T Consensus 12 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~ 68 (257)
T 1lv7_A 12 ADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGE 68 (257)
T ss_dssp GGSCSCHHHHHHTHHHHHHHHCGGGC-----CCCCEEEEECCTTSCHHHHHHHHHHH
T ss_pred HHhcCcHHHHHHHHHHHHHHhCHHHHHHcCCCCCCeEEEECcCCCCHHHHHHHHHHH
Confidence 468999988887766542 11 011234779999999999999999873
No 49
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=96.73 E-value=0.0015 Score=58.22 Aligned_cols=47 Identities=19% Similarity=0.290 Sum_probs=37.0
Q ss_pred CcccccchhHHHHHHHHhc---------C-CCCcEEEEEEcCCCCChhHHHHHHhcc
Q 047336 159 RNTVGLDDRMEELLDLLIE---------G-PTQLSVVAILDSIGLDKTAFTAEAYNS 205 (290)
Q Consensus 159 ~~~vG~e~~~~~L~~~L~~---------~-~~~~~Vi~IvGmgGiGKTTLa~~vy~d 205 (290)
.+++|.+..++.|.+.+.. + ....+-+-++|++|+|||+||+.+.+.
T Consensus 12 ~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~ 68 (322)
T 1xwi_A 12 SDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATE 68 (322)
T ss_dssp GGSCSCHHHHHHHHHHHHHHHHCGGGSCTTCCCCSEEEEESSSSSCHHHHHHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHHHHHhCHHHHhCCCCCCceEEEECCCCccHHHHHHHHHHH
Confidence 5689999999998887641 1 122356789999999999999999983
No 50
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=96.72 E-value=0.00085 Score=58.65 Aligned_cols=46 Identities=13% Similarity=0.182 Sum_probs=36.5
Q ss_pred CcccccchhHHHHHHHHhc------------CCCCcEEEEEEcCCCCChhHHHHHHhc
Q 047336 159 RNTVGLDDRMEELLDLLIE------------GPTQLSVVAILDSIGLDKTAFTAEAYN 204 (290)
Q Consensus 159 ~~~vG~e~~~~~L~~~L~~------------~~~~~~Vi~IvGmgGiGKTTLa~~vy~ 204 (290)
..++|.+..++.|...+.. ......-+-++|.+|+||||||+.+.+
T Consensus 15 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~ 72 (310)
T 1ofh_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAK 72 (310)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHTTSSCHHHHHHCCCCCEEEECCTTSSHHHHHHHHHH
T ss_pred hhcCChHHHHHHHHHHHHHHHhhhhhcccccccCCCceEEEECCCCCCHHHHHHHHHH
Confidence 4589999999999888764 011234566999999999999999987
No 51
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.65 E-value=0.00085 Score=60.07 Aligned_cols=44 Identities=11% Similarity=0.012 Sum_probs=35.3
Q ss_pred CcccccchhHHHHHHHH-hcCCCCcEEEEEEcCCCCChhHHHHHHhc
Q 047336 159 RNTVGLDDRMEELLDLL-IEGPTQLSVVAILDSIGLDKTAFTAEAYN 204 (290)
Q Consensus 159 ~~~vG~e~~~~~L~~~L-~~~~~~~~Vi~IvGmgGiGKTTLa~~vy~ 204 (290)
.+++|.+...+.|.+++ ..+. .+.+.|+|+.|+||||||+.+.+
T Consensus 14 ~~~vg~~~~~~~l~~~~~~~~~--~~~~ll~Gp~G~GKTtl~~~la~ 58 (354)
T 1sxj_E 14 NALSHNEELTNFLKSLSDQPRD--LPHLLLYGPNGTGKKTRCMALLE 58 (354)
T ss_dssp GGCCSCHHHHHHHHTTTTCTTC--CCCEEEECSTTSSHHHHHHTHHH
T ss_pred HHhcCCHHHHHHHHHHHhhCCC--CCeEEEECCCCCCHHHHHHHHHH
Confidence 45899999999888888 4433 22388999999999999998765
No 52
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=96.62 E-value=0.001 Score=54.01 Aligned_cols=24 Identities=13% Similarity=0.113 Sum_probs=21.6
Q ss_pred cEEEEEEcCCCCChhHHHHHHhcc
Q 047336 182 LSVVAILDSIGLDKTAFTAEAYNS 205 (290)
Q Consensus 182 ~~Vi~IvGmgGiGKTTLa~~vy~d 205 (290)
-.+|+|+|+.|+|||||++.+...
T Consensus 9 g~~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 9 GNILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp TEEEEEEECTTSCHHHHHHHHHTC
T ss_pred CeEEEEECCCCCCHHHHHHHHHhc
Confidence 468999999999999999999773
No 53
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=96.61 E-value=0.001 Score=52.90 Aligned_cols=22 Identities=9% Similarity=0.027 Sum_probs=20.0
Q ss_pred EEEEEEcCCCCChhHHHHHHhc
Q 047336 183 SVVAILDSIGLDKTAFTAEAYN 204 (290)
Q Consensus 183 ~Vi~IvGmgGiGKTTLa~~vy~ 204 (290)
.+|.|.|+.|+||||+|+.+..
T Consensus 2 ~~i~l~G~~GsGKsT~~~~L~~ 23 (173)
T 3kb2_A 2 TLIILEGPDCCFKSTVAAKLSK 23 (173)
T ss_dssp CEEEEECSSSSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4789999999999999999865
No 54
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.58 E-value=0.0017 Score=58.06 Aligned_cols=44 Identities=16% Similarity=0.212 Sum_probs=36.3
Q ss_pred CcccccchhHHHHHHHHhcCCCCcEEEEEEcCCCCChhHHHHHHhc
Q 047336 159 RNTVGLDDRMEELLDLLIEGPTQLSVVAILDSIGLDKTAFTAEAYN 204 (290)
Q Consensus 159 ~~~vG~e~~~~~L~~~L~~~~~~~~Vi~IvGmgGiGKTTLa~~vy~ 204 (290)
.+++|.+..++.|..++..+. ++.+.++|+.|+||||+|+.+.+
T Consensus 25 ~~~~g~~~~~~~L~~~i~~g~--~~~~ll~Gp~G~GKTtla~~la~ 68 (340)
T 1sxj_C 25 DEVYGQNEVITTVRKFVDEGK--LPHLLFYGPPGTGKTSTIVALAR 68 (340)
T ss_dssp GGCCSCHHHHHHHHHHHHTTC--CCCEEEECSSSSSHHHHHHHHHH
T ss_pred HHhcCcHHHHHHHHHHHhcCC--CceEEEECCCCCCHHHHHHHHHH
Confidence 457898888888888887664 33488999999999999998876
No 55
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=96.58 E-value=0.0013 Score=57.63 Aligned_cols=45 Identities=18% Similarity=0.306 Sum_probs=36.7
Q ss_pred cccccchhHHHHHHHHhcC-------CCCcEEEEEEcCCCCChhHHHHHHhc
Q 047336 160 NTVGLDDRMEELLDLLIEG-------PTQLSVVAILDSIGLDKTAFTAEAYN 204 (290)
Q Consensus 160 ~~vG~e~~~~~L~~~L~~~-------~~~~~Vi~IvGmgGiGKTTLa~~vy~ 204 (290)
.++|.+..++.|...+... ......+.++|.+|+||||||+.+.+
T Consensus 18 ~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~ll~G~~GtGKt~la~~la~ 69 (311)
T 4fcw_A 18 RVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAA 69 (311)
T ss_dssp TCCSCHHHHHHHHHHHHHHHHTCSCTTSCSEEEEEESCSSSSHHHHHHHHHH
T ss_pred hcCCHHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCcCHHHHHHHHHH
Confidence 4789999999888888642 12245789999999999999999987
No 56
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=96.56 E-value=0.0014 Score=56.34 Aligned_cols=47 Identities=17% Similarity=0.262 Sum_probs=35.0
Q ss_pred CcccccchhHHHHHHHHhc----------CCCCcEEEEEEcCCCCChhHHHHHHhcc
Q 047336 159 RNTVGLDDRMEELLDLLIE----------GPTQLSVVAILDSIGLDKTAFTAEAYNS 205 (290)
Q Consensus 159 ~~~vG~e~~~~~L~~~L~~----------~~~~~~Vi~IvGmgGiGKTTLa~~vy~d 205 (290)
.+++|.+..++.|.+.+.. +.....-+-++|++|+||||||+.+.+.
T Consensus 11 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~ 67 (268)
T 2r62_A 11 KDMAGNEEAKEEVVEIVDFLKYPERYANLGAKIPKGVLLVGPPGTGKTLLAKAVAGE 67 (268)
T ss_dssp TTSSSCTTTHHHHHHHHHHHHCHHHHHHHSCCCCSCCCCBCSSCSSHHHHHHHHHHH
T ss_pred HHhCCcHHHHHHHHHHHHHHHChHHHHHCCCCCCceEEEECCCCCcHHHHHHHHHHH
Confidence 4699999888888876641 1111223668999999999999999883
No 57
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=96.53 E-value=0.002 Score=64.03 Aligned_cols=44 Identities=14% Similarity=0.274 Sum_probs=37.1
Q ss_pred CcccccchhHHHHHHHHhcCCCCcEEEEEEcCCCCChhHHHHHHhc
Q 047336 159 RNTVGLDDRMEELLDLLIEGPTQLSVVAILDSIGLDKTAFTAEAYN 204 (290)
Q Consensus 159 ~~~vG~e~~~~~L~~~L~~~~~~~~Vi~IvGmgGiGKTTLa~~vy~ 204 (290)
..++|++..++.+...|.... ..-+-++|.+|+||||+|+.+.+
T Consensus 180 d~iiG~~~~i~~l~~~l~~~~--~~~vLL~G~pGtGKT~la~~la~ 223 (758)
T 3pxi_A 180 DPVIGRSKEIQRVIEVLSRRT--KNNPVLIGEPGVGKTAIAEGLAQ 223 (758)
T ss_dssp CCCCCCHHHHHHHHHHHHCSS--SCEEEEESCTTTTTHHHHHHHHH
T ss_pred CCccCchHHHHHHHHHHhCCC--CCCeEEECCCCCCHHHHHHHHHH
Confidence 469999999999999998643 23356999999999999998876
No 58
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=96.53 E-value=0.0017 Score=57.50 Aligned_cols=46 Identities=17% Similarity=0.163 Sum_probs=36.1
Q ss_pred CcccccchhHHHHHHHHhcCCCCcEEEEEEcCCCCChhHHHHHHhc
Q 047336 159 RNTVGLDDRMEELLDLLIEGPTQLSVVAILDSIGLDKTAFTAEAYN 204 (290)
Q Consensus 159 ~~~vG~e~~~~~L~~~L~~~~~~~~Vi~IvGmgGiGKTTLa~~vy~ 204 (290)
++++|....+.++.+.+..-.....-+-|+|..|+|||++|+.+++
T Consensus 2 ~~iig~s~~~~~~~~~~~~~a~~~~~vLi~Ge~GtGKt~lAr~i~~ 47 (304)
T 1ojl_A 2 SHMIGSSPAMQHLLNEIAMVAPSDATVLIHGDSGTGKELVARALHA 47 (304)
T ss_dssp -CCCCCSHHHHHHHHHHHHHCSTTSCEEEESCTTSCHHHHHHHHHH
T ss_pred CCcEECCHHHHHHHHHHHHHhCCCCcEEEECCCCchHHHHHHHHHH
Confidence 4589999999999998875222233455999999999999999987
No 59
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=96.53 E-value=0.0018 Score=58.51 Aligned_cols=45 Identities=13% Similarity=0.121 Sum_probs=35.8
Q ss_pred cccccchhHHHHHHHHhc-------------CCCCcEEEEEEcCCCCChhHHHHHHhc
Q 047336 160 NTVGLDDRMEELLDLLIE-------------GPTQLSVVAILDSIGLDKTAFTAEAYN 204 (290)
Q Consensus 160 ~~vG~e~~~~~L~~~L~~-------------~~~~~~Vi~IvGmgGiGKTTLa~~vy~ 204 (290)
.++|.+..++.|...+.. .......+-++|++|+|||++|+.+.+
T Consensus 16 ~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~vll~GppGtGKT~la~~ia~ 73 (363)
T 3hws_A 16 YVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLAR 73 (363)
T ss_dssp HCCSCHHHHHHHHHHHHHHHHHHHTTSCSSSCCCCCCCEEEECCTTSSHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHHHhhhccccccccccCCCCeEEEECCCCCCHHHHHHHHHH
Confidence 479999999999888731 112345678999999999999999987
No 60
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=96.48 E-value=0.0014 Score=53.95 Aligned_cols=23 Identities=13% Similarity=0.160 Sum_probs=20.9
Q ss_pred cEEEEEEcCCCCChhHHHHHHhc
Q 047336 182 LSVVAILDSIGLDKTAFTAEAYN 204 (290)
Q Consensus 182 ~~Vi~IvGmgGiGKTTLa~~vy~ 204 (290)
..+|.|+|+.|+||||+++.+..
T Consensus 25 ~~~i~l~G~~GsGKsTl~~~La~ 47 (199)
T 3vaa_A 25 MVRIFLTGYMGAGKTTLGKAFAR 47 (199)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHH
Confidence 56899999999999999999875
No 61
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=96.46 E-value=0.0011 Score=52.92 Aligned_cols=22 Identities=9% Similarity=0.231 Sum_probs=20.2
Q ss_pred EEEEEEcCCCCChhHHHHHHhc
Q 047336 183 SVVAILDSIGLDKTAFTAEAYN 204 (290)
Q Consensus 183 ~Vi~IvGmgGiGKTTLa~~vy~ 204 (290)
.+|+|+|+.|+|||||++.+..
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~ 26 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQ 26 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999876
No 62
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=96.46 E-value=0.0016 Score=52.12 Aligned_cols=22 Identities=14% Similarity=0.285 Sum_probs=20.3
Q ss_pred EEEEEEcCCCCChhHHHHHHhc
Q 047336 183 SVVAILDSIGLDKTAFTAEAYN 204 (290)
Q Consensus 183 ~Vi~IvGmgGiGKTTLa~~vy~ 204 (290)
.+|.|.|++|+||||+|+.+..
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 5789999999999999999876
No 63
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=96.46 E-value=0.0014 Score=53.14 Aligned_cols=23 Identities=9% Similarity=0.221 Sum_probs=20.9
Q ss_pred cEEEEEEcCCCCChhHHHHHHhc
Q 047336 182 LSVVAILDSIGLDKTAFTAEAYN 204 (290)
Q Consensus 182 ~~Vi~IvGmgGiGKTTLa~~vy~ 204 (290)
-.+++|+|+.|+|||||++.+..
T Consensus 5 g~~i~i~GpsGsGKSTL~~~L~~ 27 (180)
T 1kgd_A 5 RKTLVLLGAHGVGRRHIKNTLIT 27 (180)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHh
Confidence 35899999999999999999976
No 64
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=96.45 E-value=0.0018 Score=58.53 Aligned_cols=47 Identities=17% Similarity=0.232 Sum_probs=36.5
Q ss_pred CcccccchhHHHHHHHHhc----------CCCCcEEEEEEcCCCCChhHHHHHHhcc
Q 047336 159 RNTVGLDDRMEELLDLLIE----------GPTQLSVVAILDSIGLDKTAFTAEAYNS 205 (290)
Q Consensus 159 ~~~vG~e~~~~~L~~~L~~----------~~~~~~Vi~IvGmgGiGKTTLa~~vy~d 205 (290)
.+++|.+..++.|.+.+.. ......-|-++|++|+|||+||+.+.+.
T Consensus 51 ~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~ 107 (355)
T 2qp9_X 51 EDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATE 107 (355)
T ss_dssp GGSCCGGGHHHHHHHHTHHHHHCGGGGCSSCCCCCCEEEECSTTSCHHHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHHHHHhCHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHH
Confidence 4699999999999987731 1112344678999999999999999983
No 65
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=96.44 E-value=0.0017 Score=65.44 Aligned_cols=44 Identities=16% Similarity=0.337 Sum_probs=37.3
Q ss_pred CcccccchhHHHHHHHHhcCCCCcEEEEEEcCCCCChhHHHHHHhc
Q 047336 159 RNTVGLDDRMEELLDLLIEGPTQLSVVAILDSIGLDKTAFTAEAYN 204 (290)
Q Consensus 159 ~~~vG~e~~~~~L~~~L~~~~~~~~Vi~IvGmgGiGKTTLa~~vy~ 204 (290)
+.++|++.....+++.|.... ..-+-++|.+|+||||||+.+.+
T Consensus 170 d~viGr~~~i~~l~~~l~~~~--~~~vlL~G~pG~GKT~la~~la~ 213 (854)
T 1qvr_A 170 DPVIGRDEEIRRVIQILLRRT--KNNPVLIGEPGVGKTAIVEGLAQ 213 (854)
T ss_dssp CCCCSCHHHHHHHHHHHHCSS--CCCCEEEECTTSCHHHHHHHHHH
T ss_pred cccCCcHHHHHHHHHHHhcCC--CCceEEEcCCCCCHHHHHHHHHH
Confidence 468999999999999998653 33357899999999999999887
No 66
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=96.40 E-value=0.0016 Score=52.22 Aligned_cols=22 Identities=5% Similarity=0.034 Sum_probs=20.1
Q ss_pred EEEEEEcCCCCChhHHHHHHhc
Q 047336 183 SVVAILDSIGLDKTAFTAEAYN 204 (290)
Q Consensus 183 ~Vi~IvGmgGiGKTTLa~~vy~ 204 (290)
.+|.|.|+.|+||||+|+.+-+
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~ 25 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQS 25 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4788999999999999999876
No 67
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=96.39 E-value=0.0018 Score=52.09 Aligned_cols=23 Identities=30% Similarity=0.595 Sum_probs=20.2
Q ss_pred cEEEEEEcCCCCChhHHHHHHhc
Q 047336 182 LSVVAILDSIGLDKTAFTAEAYN 204 (290)
Q Consensus 182 ~~Vi~IvGmgGiGKTTLa~~vy~ 204 (290)
-.+++|+|+.|+|||||++..+.
T Consensus 9 gei~~l~G~nGsGKSTl~~~~~~ 31 (171)
T 4gp7_A 9 LSLVVLIGSSGSGKSTFAKKHFK 31 (171)
T ss_dssp SEEEEEECCTTSCHHHHHHHHSC
T ss_pred CEEEEEECCCCCCHHHHHHHHcc
Confidence 46899999999999999997554
No 68
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=96.38 E-value=0.002 Score=58.85 Aligned_cols=46 Identities=15% Similarity=0.167 Sum_probs=37.1
Q ss_pred CcccccchhHHHHHHHHhcC----------CCCcEEEEEEcCCCCChhHHHHHHhc
Q 047336 159 RNTVGLDDRMEELLDLLIEG----------PTQLSVVAILDSIGLDKTAFTAEAYN 204 (290)
Q Consensus 159 ~~~vG~e~~~~~L~~~L~~~----------~~~~~Vi~IvGmgGiGKTTLa~~vy~ 204 (290)
.+++|.+..++.|.+++... .....-+-|+|.+|+|||+||+.+.+
T Consensus 115 ~~iiG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~aia~ 170 (389)
T 3vfd_A 115 DDIAGQDLAKQALQEIVILPSLRPELFTGLRAPARGLLLFGPPGNGKTMLAKAVAA 170 (389)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGCCCSEEEEESSTTSCHHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHHHhccCHHHhcccCCCCceEEEECCCCCCHHHHHHHHHH
Confidence 56999999999999887320 11245678999999999999999987
No 69
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=96.38 E-value=0.0021 Score=52.90 Aligned_cols=25 Identities=12% Similarity=0.125 Sum_probs=22.2
Q ss_pred CCcEEEEEEcCCCCChhHHHHHHhc
Q 047336 180 TQLSVVAILDSIGLDKTAFTAEAYN 204 (290)
Q Consensus 180 ~~~~Vi~IvGmgGiGKTTLa~~vy~ 204 (290)
..-.+|+|+|+.|.|||||++.+..
T Consensus 23 ~~g~~i~l~G~sGsGKSTl~~~La~ 47 (200)
T 3uie_A 23 QKGCVIWVTGLSGSGKSTLACALNQ 47 (200)
T ss_dssp SCCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3467999999999999999999876
No 70
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=96.37 E-value=0.0017 Score=53.24 Aligned_cols=22 Identities=18% Similarity=0.220 Sum_probs=20.4
Q ss_pred EEEEEEcCCCCChhHHHHHHhc
Q 047336 183 SVVAILDSIGLDKTAFTAEAYN 204 (290)
Q Consensus 183 ~Vi~IvGmgGiGKTTLa~~vy~ 204 (290)
.+++|+|+.|+|||||++.+..
T Consensus 8 ~ii~l~Gp~GsGKSTl~~~L~~ 29 (205)
T 3tr0_A 8 NLFIISAPSGAGKTSLVRALVK 29 (205)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred cEEEEECcCCCCHHHHHHHHHh
Confidence 5899999999999999999876
No 71
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=96.36 E-value=0.002 Score=53.27 Aligned_cols=24 Identities=17% Similarity=0.144 Sum_probs=21.7
Q ss_pred CcEEEEEEcCCCCChhHHHHHHhc
Q 047336 181 QLSVVAILDSIGLDKTAFTAEAYN 204 (290)
Q Consensus 181 ~~~Vi~IvGmgGiGKTTLa~~vy~ 204 (290)
...+|+|+|+.|+|||||++.+..
T Consensus 5 ~~~~i~i~G~~GsGKSTl~~~l~~ 28 (211)
T 3asz_A 5 KPFVIGIAGGTASGKTTLAQALAR 28 (211)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHH
T ss_pred CcEEEEEECCCCCCHHHHHHHHHH
Confidence 457999999999999999999876
No 72
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=96.35 E-value=0.003 Score=62.74 Aligned_cols=44 Identities=16% Similarity=0.216 Sum_probs=37.3
Q ss_pred CcccccchhHHHHHHHHhcCCCCcEEEEEEcCCCCChhHHHHHHhc
Q 047336 159 RNTVGLDDRMEELLDLLIEGPTQLSVVAILDSIGLDKTAFTAEAYN 204 (290)
Q Consensus 159 ~~~vG~e~~~~~L~~~L~~~~~~~~Vi~IvGmgGiGKTTLa~~vy~ 204 (290)
..++|++...+.+.+.|.... ..-+-++|.+|+||||||+.+.+
T Consensus 186 d~~iGr~~~i~~l~~~l~~~~--~~~vlL~G~~GtGKT~la~~la~ 229 (758)
T 1r6b_X 186 DPLIGREKELERAIQVLCRRR--KNNPLLVGESGVGKTAIAEGLAW 229 (758)
T ss_dssp CCCCSCHHHHHHHHHHHTSSS--SCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCccCCHHHHHHHHHHHhccC--CCCeEEEcCCCCCHHHHHHHHHH
Confidence 468999999999999988653 33456899999999999999887
No 73
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=96.35 E-value=0.0026 Score=50.90 Aligned_cols=24 Identities=17% Similarity=0.279 Sum_probs=21.4
Q ss_pred CcEEEEEEcCCCCChhHHHHHHhc
Q 047336 181 QLSVVAILDSIGLDKTAFTAEAYN 204 (290)
Q Consensus 181 ~~~Vi~IvGmgGiGKTTLa~~vy~ 204 (290)
.-.+|+|+|+.|+|||||++.+..
T Consensus 7 ~g~~i~l~G~~GsGKSTl~~~l~~ 30 (175)
T 1knq_A 7 DHHIYVLMGVSGSGKSAVASEVAH 30 (175)
T ss_dssp TSEEEEEECSTTSCHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHH
Confidence 357899999999999999999875
No 74
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=96.34 E-value=0.0024 Score=55.65 Aligned_cols=46 Identities=24% Similarity=0.237 Sum_probs=33.6
Q ss_pred CcccccchhHHHHHHHHhc---C---------CCCcEEEEEEcCCCCChhHHHHHHhcc
Q 047336 159 RNTVGLDDRMEELLDLLIE---G---------PTQLSVVAILDSIGLDKTAFTAEAYNS 205 (290)
Q Consensus 159 ~~~vG~e~~~~~L~~~L~~---~---------~~~~~Vi~IvGmgGiGKTTLa~~vy~d 205 (290)
.++.|.++.+++|.+.+.. . ..... +.++|++|+||||||+.+...
T Consensus 10 ~di~g~~~~~~~l~~~i~~~~~~~~~l~~~~l~~~~G-vlL~Gp~GtGKTtLakala~~ 67 (274)
T 2x8a_A 10 ADIGALEDIREELTMAILAPVRNPDQFKALGLVTPAG-VLLAGPPGCGKTLLAKAVANE 67 (274)
T ss_dssp --CCHHHHHHHHHHHHHTHHHHSHHHHHHTTCCCCSE-EEEESSTTSCHHHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCCe-EEEECCCCCcHHHHHHHHHHH
Confidence 4588899888888775431 1 11223 899999999999999999873
No 75
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=96.34 E-value=0.002 Score=52.28 Aligned_cols=22 Identities=14% Similarity=0.151 Sum_probs=20.0
Q ss_pred EEEEEEcCCCCChhHHHHHHhc
Q 047336 183 SVVAILDSIGLDKTAFTAEAYN 204 (290)
Q Consensus 183 ~Vi~IvGmgGiGKTTLa~~vy~ 204 (290)
.+++|+|+.|.|||||++.+..
T Consensus 3 ~ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 3 KLYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHhc
Confidence 4789999999999999999975
No 76
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=96.33 E-value=0.0036 Score=56.53 Aligned_cols=43 Identities=21% Similarity=0.254 Sum_probs=32.3
Q ss_pred cccchhHHHHHHHHhc--CCCCcEEEEEEcCCCCChhHHHHHHhc
Q 047336 162 VGLDDRMEELLDLLIE--GPTQLSVVAILDSIGLDKTAFTAEAYN 204 (290)
Q Consensus 162 vG~e~~~~~L~~~L~~--~~~~~~Vi~IvGmgGiGKTTLa~~vy~ 204 (290)
|+.+.-.+++++.+.. .......|.++|+.|+||||+++.+..
T Consensus 2 ~~~~~L~~~il~~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~ 46 (359)
T 2ga8_A 2 VDTHKLADDVLQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQ 46 (359)
T ss_dssp CCHHHHHHHHHHHHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHhccCCeeEEEEECCCCCcHHHHHHHHHH
Confidence 4455666777777653 234467799999999999999998766
No 77
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=96.33 E-value=0.0035 Score=55.40 Aligned_cols=45 Identities=13% Similarity=0.058 Sum_probs=37.9
Q ss_pred CcccccchhHHHHHHHHhcCCCCcEEEEEEcCCCCChhHHHHHHhc
Q 047336 159 RNTVGLDDRMEELLDLLIEGPTQLSVVAILDSIGLDKTAFTAEAYN 204 (290)
Q Consensus 159 ~~~vG~e~~~~~L~~~L~~~~~~~~Vi~IvGmgGiGKTTLa~~vy~ 204 (290)
.+++|.+...+.|.+++..+. ...++-+.|++|+||||+|+.+.+
T Consensus 26 ~~ivg~~~~~~~l~~~l~~~~-~~~~~L~~G~~G~GKT~la~~la~ 70 (324)
T 3u61_B 26 DECILPAFDKETFKSITSKGK-IPHIILHSPSPGTGKTTVAKALCH 70 (324)
T ss_dssp TTSCCCHHHHHHHHHHHHTTC-CCSEEEECSSTTSSHHHHHHHHHH
T ss_pred HHHhCcHHHHHHHHHHHHcCC-CCeEEEeeCcCCCCHHHHHHHHHH
Confidence 568999999999999998653 235677788899999999999987
No 78
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=96.33 E-value=0.0035 Score=53.45 Aligned_cols=46 Identities=17% Similarity=0.286 Sum_probs=33.5
Q ss_pred CcccccchhHHHHHHHHhc--C---------CCCcEEEEEEcCCCCChhHHHHHHhcc
Q 047336 159 RNTVGLDDRMEELLDLLIE--G---------PTQLSVVAILDSIGLDKTAFTAEAYNS 205 (290)
Q Consensus 159 ~~~vG~e~~~~~L~~~L~~--~---------~~~~~Vi~IvGmgGiGKTTLa~~vy~d 205 (290)
.+++|.+..+.++.+.... . ..... +.|+|+.|+|||||++.+.+.
T Consensus 16 ~~i~g~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~g-~ll~G~~G~GKTtl~~~i~~~ 72 (254)
T 1ixz_A 16 KDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKG-VLLVGPPGVGKTHLARAVAGE 72 (254)
T ss_dssp GGCCSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCSE-EEEECCTTSSHHHHHHHHHHH
T ss_pred HHhCCcHHHHHHHHHHHHHHHCHHHHHHcCCCCCCe-EEEECCCCCCHHHHHHHHHHH
Confidence 4688988777777665431 1 11123 889999999999999999983
No 79
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=96.30 E-value=0.0024 Score=52.23 Aligned_cols=25 Identities=20% Similarity=0.264 Sum_probs=22.7
Q ss_pred CCcEEEEEEcCCCCChhHHHHHHhc
Q 047336 180 TQLSVVAILDSIGLDKTAFTAEAYN 204 (290)
Q Consensus 180 ~~~~Vi~IvGmgGiGKTTLa~~vy~ 204 (290)
.+..+|+|+|+.|+||||+++.+-.
T Consensus 6 ~~~~~I~i~G~~GsGKST~~~~La~ 30 (203)
T 1uf9_A 6 KHPIIIGITGNIGSGKSTVAALLRS 30 (203)
T ss_dssp CCCEEEEEEECTTSCHHHHHHHHHH
T ss_pred cCceEEEEECCCCCCHHHHHHHHHH
Confidence 4578999999999999999999876
No 80
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=96.30 E-value=0.0052 Score=52.96 Aligned_cols=47 Identities=21% Similarity=0.171 Sum_probs=35.4
Q ss_pred CcccccchhHHHHHHH-------Hhc-CCCCcEEEEEEcCCCCChhHHHHHHhcc
Q 047336 159 RNTVGLDDRMEELLDL-------LIE-GPTQLSVVAILDSIGLDKTAFTAEAYNS 205 (290)
Q Consensus 159 ~~~vG~e~~~~~L~~~-------L~~-~~~~~~Vi~IvGmgGiGKTTLa~~vy~d 205 (290)
..++|.....+++... +.. ......-+-|+|++|+||||||+.+.+.
T Consensus 33 ~~~i~~~~~~~~i~~~~~~l~~~l~~~~~~~~~~vLl~G~~GtGKT~la~~ia~~ 87 (272)
T 1d2n_A 33 NGIIKWGDPVTRVLDDGELLVQQTKNSDRTPLVSVLLEGPPHSGKTALAAKIAEE 87 (272)
T ss_dssp TCCCCCSHHHHHHHHHHHHHHHHHHHCSSCSEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred cCCCCccHHHHHHHHHHHHHHHHHhccCCCCCeEEEEECCCCCcHHHHHHHHHHH
Confidence 4578888877777763 221 2345677889999999999999999883
No 81
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=96.29 E-value=0.002 Score=53.79 Aligned_cols=23 Identities=17% Similarity=0.180 Sum_probs=20.5
Q ss_pred cEEEEEEcCCCCChhHHHHHHhc
Q 047336 182 LSVVAILDSIGLDKTAFTAEAYN 204 (290)
Q Consensus 182 ~~Vi~IvGmgGiGKTTLa~~vy~ 204 (290)
..+|+|+|+.|+||||+++.+..
T Consensus 5 ~~~i~i~G~~GsGKSTl~~~L~~ 27 (227)
T 1cke_A 5 APVITIDGPSGAGKGTLCKAMAE 27 (227)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 35899999999999999998865
No 82
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=96.29 E-value=0.0031 Score=58.73 Aligned_cols=47 Identities=17% Similarity=0.235 Sum_probs=37.3
Q ss_pred CcccccchhHHHHHHHHhc----------CCCCcEEEEEEcCCCCChhHHHHHHhcc
Q 047336 159 RNTVGLDDRMEELLDLLIE----------GPTQLSVVAILDSIGLDKTAFTAEAYNS 205 (290)
Q Consensus 159 ~~~vG~e~~~~~L~~~L~~----------~~~~~~Vi~IvGmgGiGKTTLa~~vy~d 205 (290)
.+++|.+..++.|.+.+.. .....+-+-++|++|+|||+||+.+.+.
T Consensus 134 ~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~aia~~ 190 (444)
T 2zan_A 134 SDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATE 190 (444)
T ss_dssp GGSCSCHHHHHHHHHHHTHHHHCTTTTSGGGCCCSEEEEECSTTSSHHHHHHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHHHHhhCHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHH
Confidence 5689999999999887731 1123466789999999999999999983
No 83
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=96.29 E-value=0.002 Score=52.01 Aligned_cols=23 Identities=17% Similarity=0.317 Sum_probs=20.4
Q ss_pred cEEEEEEcCCCCChhHHHHHHhc
Q 047336 182 LSVVAILDSIGLDKTAFTAEAYN 204 (290)
Q Consensus 182 ~~Vi~IvGmgGiGKTTLa~~vy~ 204 (290)
.+.|.|+|+.|+||||+|+.+-.
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~ 27 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAK 27 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 45788999999999999999865
No 84
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=96.28 E-value=0.0021 Score=52.31 Aligned_cols=22 Identities=18% Similarity=0.265 Sum_probs=19.7
Q ss_pred EEEEEcCCCCChhHHHHHHhcc
Q 047336 184 VVAILDSIGLDKTAFTAEAYNS 205 (290)
Q Consensus 184 Vi~IvGmgGiGKTTLa~~vy~d 205 (290)
.++|+|..|+|||||++.+...
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~ 23 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVER 23 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999988763
No 85
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=96.28 E-value=0.0021 Score=51.91 Aligned_cols=22 Identities=14% Similarity=0.179 Sum_probs=20.3
Q ss_pred EEEEEEcCCCCChhHHHHHHhc
Q 047336 183 SVVAILDSIGLDKTAFTAEAYN 204 (290)
Q Consensus 183 ~Vi~IvGmgGiGKTTLa~~vy~ 204 (290)
.+|.|.|+.|+||||+|+.+.+
T Consensus 2 ~~I~i~G~~GsGKsT~~~~L~~ 23 (194)
T 1nks_A 2 KIGIVTGIPGVGKSTVLAKVKE 23 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4789999999999999999977
No 86
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=96.28 E-value=0.0036 Score=55.47 Aligned_cols=37 Identities=24% Similarity=0.192 Sum_probs=26.5
Q ss_pred HHHHHHHHhcCCCCcEEEEEEcCCCCChhHHHHHHhc
Q 047336 168 MEELLDLLIEGPTQLSVVAILDSIGLDKTAFTAEAYN 204 (290)
Q Consensus 168 ~~~L~~~L~~~~~~~~Vi~IvGmgGiGKTTLa~~vy~ 204 (290)
...+..++.........+-|+|++|+||||||+.+.+
T Consensus 23 ~~~~~~~~~~~~~~~~~lll~G~~GtGKT~la~~i~~ 59 (324)
T 1l8q_A 23 YEVVKEALENLGSLYNPIFIYGSVGTGKTHLLQAAGN 59 (324)
T ss_dssp HHHHHHHHHTTTTSCSSEEEECSSSSSHHHHHHHHHH
T ss_pred HHHHHHHHhCcCCCCCeEEEECCCCCcHHHHHHHHHH
Confidence 3344444443322456788999999999999999998
No 87
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=96.28 E-value=0.0025 Score=52.57 Aligned_cols=25 Identities=12% Similarity=0.158 Sum_probs=22.3
Q ss_pred CCcEEEEEEcCCCCChhHHHHHHhc
Q 047336 180 TQLSVVAILDSIGLDKTAFTAEAYN 204 (290)
Q Consensus 180 ~~~~Vi~IvGmgGiGKTTLa~~vy~ 204 (290)
....+|+|+|+.|+|||||++.+..
T Consensus 19 ~~~~~i~i~G~~GsGKSTl~~~L~~ 43 (207)
T 2qt1_A 19 SKTFIIGISGVTNSGKTTLAKNLQK 43 (207)
T ss_dssp CCCEEEEEEESTTSSHHHHHHHHHT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3467999999999999999999976
No 88
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=96.27 E-value=0.004 Score=58.19 Aligned_cols=47 Identities=17% Similarity=0.108 Sum_probs=35.7
Q ss_pred CcccccchhHHHHHHHH---hcCCCCcEEEEEEcCCCCChhHHHHHHhcc
Q 047336 159 RNTVGLDDRMEELLDLL---IEGPTQLSVVAILDSIGLDKTAFTAEAYNS 205 (290)
Q Consensus 159 ~~~vG~e~~~~~L~~~L---~~~~~~~~Vi~IvGmgGiGKTTLa~~vy~d 205 (290)
.+++|.++.++.+..++ ..+....+-+-++|++|+|||+||+.+.+.
T Consensus 37 ~~iiG~~~~~~~l~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~ala~~ 86 (456)
T 2c9o_A 37 SGLVGQENAREACGVIVELIKSKKMAGRAVLLAGPPGTGKTALALAIAQE 86 (456)
T ss_dssp TTEESCHHHHHHHHHHHHHHHTTCCTTCEEEEECCTTSSHHHHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHHHhCCCCCCeEEEECCCcCCHHHHHHHHHHH
Confidence 57999999888665544 334333355778999999999999999883
No 89
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=96.27 E-value=0.002 Score=52.60 Aligned_cols=21 Identities=29% Similarity=0.507 Sum_probs=19.6
Q ss_pred EEEEEcCCCCChhHHHHHHhc
Q 047336 184 VVAILDSIGLDKTAFTAEAYN 204 (290)
Q Consensus 184 Vi~IvGmgGiGKTTLa~~vy~ 204 (290)
.|+|.|+.|+||||+++.+.+
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~ 22 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISK 22 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHH
Confidence 689999999999999999876
No 90
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=96.25 E-value=0.0025 Score=54.51 Aligned_cols=25 Identities=8% Similarity=0.110 Sum_probs=21.8
Q ss_pred CCcEEEEEEcCCCCChhHHHHHHhc
Q 047336 180 TQLSVVAILDSIGLDKTAFTAEAYN 204 (290)
Q Consensus 180 ~~~~Vi~IvGmgGiGKTTLa~~vy~ 204 (290)
.+..+|+|.|+.|+||||+|+.+-.
T Consensus 20 ~~~~iI~I~G~~GSGKST~a~~L~~ 44 (252)
T 1uj2_A 20 GEPFLIGVSGGTASGKSSVCAKIVQ 44 (252)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHH
Confidence 4567999999999999999998866
No 91
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=96.24 E-value=0.0027 Score=51.44 Aligned_cols=23 Identities=9% Similarity=0.118 Sum_probs=21.0
Q ss_pred cEEEEEEcCCCCChhHHHHHHhc
Q 047336 182 LSVVAILDSIGLDKTAFTAEAYN 204 (290)
Q Consensus 182 ~~Vi~IvGmgGiGKTTLa~~vy~ 204 (290)
..+|.|.|+.|+||||+++.+..
T Consensus 5 ~~~I~l~G~~GsGKST~~~~L~~ 27 (193)
T 2rhm_A 5 PALIIVTGHPATGKTTLSQALAT 27 (193)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 56899999999999999999876
No 92
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=96.24 E-value=0.0022 Score=52.73 Aligned_cols=22 Identities=14% Similarity=0.214 Sum_probs=20.0
Q ss_pred EEEEEEcCCCCChhHHHHHHhc
Q 047336 183 SVVAILDSIGLDKTAFTAEAYN 204 (290)
Q Consensus 183 ~Vi~IvGmgGiGKTTLa~~vy~ 204 (290)
.+|+|+|+.|+||||+++.+-.
T Consensus 2 ~~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 2 KRIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHH
Confidence 4799999999999999999865
No 93
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=96.23 E-value=0.0023 Score=50.94 Aligned_cols=25 Identities=12% Similarity=0.234 Sum_probs=20.8
Q ss_pred CCcEEEEEEcCCCCChhHHHHHHhc
Q 047336 180 TQLSVVAILDSIGLDKTAFTAEAYN 204 (290)
Q Consensus 180 ~~~~Vi~IvGmgGiGKTTLa~~vy~ 204 (290)
....+|.|.|+.|+||||+++.+-+
T Consensus 5 ~~~~~i~l~G~~GsGKSTva~~La~ 29 (168)
T 1zuh_A 5 HHMQHLVLIGFMGSGKSSLAQELGL 29 (168)
T ss_dssp ---CEEEEESCTTSSHHHHHHHHHH
T ss_pred cccceEEEECCCCCCHHHHHHHHHH
Confidence 3578999999999999999999876
No 94
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=96.22 E-value=0.0023 Score=52.43 Aligned_cols=23 Identities=9% Similarity=0.208 Sum_probs=20.9
Q ss_pred cEEEEEEcCCCCChhHHHHHHhc
Q 047336 182 LSVVAILDSIGLDKTAFTAEAYN 204 (290)
Q Consensus 182 ~~Vi~IvGmgGiGKTTLa~~vy~ 204 (290)
-.+|+|+|+.|+|||||++.+..
T Consensus 6 g~~i~l~G~~GsGKSTl~~~L~~ 28 (207)
T 2j41_A 6 GLLIVLSGPSGVGKGTVRKRIFE 28 (207)
T ss_dssp CCEEEEECSTTSCHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 45899999999999999999876
No 95
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=96.22 E-value=0.0028 Score=63.50 Aligned_cols=46 Identities=13% Similarity=0.194 Sum_probs=37.8
Q ss_pred CcccccchhHHHHHHHHhc-----------CCCCcEEEEEEcCCCCChhHHHHHHhc
Q 047336 159 RNTVGLDDRMEELLDLLIE-----------GPTQLSVVAILDSIGLDKTAFTAEAYN 204 (290)
Q Consensus 159 ~~~vG~e~~~~~L~~~L~~-----------~~~~~~Vi~IvGmgGiGKTTLa~~vy~ 204 (290)
.+++|.+..+++|.+++.. +-.....|.++|.+|+||||||+.+.+
T Consensus 204 ~di~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLarala~ 260 (806)
T 1ypw_A 204 DDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVAN 260 (806)
T ss_dssp GGCCSCSGGGGHHHHHHHHHHHCGGGGTSSCCCCCCEEEECSCTTSSHHHHHHHHHH
T ss_pred HHhCChHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHH
Confidence 5699999999999888753 113345688999999999999999987
No 96
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=96.20 E-value=0.0021 Score=50.67 Aligned_cols=25 Identities=8% Similarity=0.044 Sum_probs=22.1
Q ss_pred CcEEEEEEcCCCCChhHHHHHHhcc
Q 047336 181 QLSVVAILDSIGLDKTAFTAEAYNS 205 (290)
Q Consensus 181 ~~~Vi~IvGmgGiGKTTLa~~vy~d 205 (290)
.-..+.|+|..|+|||||++.+.+.
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~~ 59 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVAQ 59 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHH
Confidence 3568899999999999999999883
No 97
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=96.20 E-value=0.0019 Score=52.49 Aligned_cols=22 Identities=14% Similarity=0.268 Sum_probs=20.1
Q ss_pred EEEEEEcCCCCChhHHHHHHhc
Q 047336 183 SVVAILDSIGLDKTAFTAEAYN 204 (290)
Q Consensus 183 ~Vi~IvGmgGiGKTTLa~~vy~ 204 (290)
++++|+|+.|+|||||++.+..
T Consensus 2 ~ii~l~GpsGaGKsTl~~~L~~ 23 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLLKKLFA 23 (186)
T ss_dssp CCEEEESSSSSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHh
Confidence 4789999999999999999986
No 98
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=96.20 E-value=0.0027 Score=52.34 Aligned_cols=22 Identities=23% Similarity=0.282 Sum_probs=20.1
Q ss_pred EEEEEEcCCCCChhHHHHHHhc
Q 047336 183 SVVAILDSIGLDKTAFTAEAYN 204 (290)
Q Consensus 183 ~Vi~IvGmgGiGKTTLa~~vy~ 204 (290)
.+|+|+|+.|+||||+++.+-.
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999965
No 99
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=96.18 E-value=0.0024 Score=51.56 Aligned_cols=22 Identities=23% Similarity=0.261 Sum_probs=20.3
Q ss_pred EEEEEEcCCCCChhHHHHHHhc
Q 047336 183 SVVAILDSIGLDKTAFTAEAYN 204 (290)
Q Consensus 183 ~Vi~IvGmgGiGKTTLa~~vy~ 204 (290)
.+|.|.|+.|+||||+++.+.+
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~ 25 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMD 25 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999976
No 100
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=96.18 E-value=0.0034 Score=54.44 Aligned_cols=47 Identities=17% Similarity=0.258 Sum_probs=34.4
Q ss_pred CCcccccchhHHHHHHHHhc--C---------CCCcEEEEEEcCCCCChhHHHHHHhcc
Q 047336 158 NRNTVGLDDRMEELLDLLIE--G---------PTQLSVVAILDSIGLDKTAFTAEAYNS 205 (290)
Q Consensus 158 ~~~~vG~e~~~~~L~~~L~~--~---------~~~~~Vi~IvGmgGiGKTTLa~~vy~d 205 (290)
-.+++|.++.++++.+.... . ..... +.|+|+.|+|||||++.+.+.
T Consensus 39 ~~~i~g~~~~~~~l~~l~~~~~~~~~l~~~~~~~~~g-vll~Gp~GtGKTtl~~~i~~~ 96 (278)
T 1iy2_A 39 FKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKG-VLLVGPPGVGKTHLARAVAGE 96 (278)
T ss_dssp GGGSSSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCCE-EEEECCTTSSHHHHHHHHHHH
T ss_pred HHHhCChHHHHHHHHHHHHHHHCHHHHHHcCCCCCCe-EEEECCCcChHHHHHHHHHHH
Confidence 35689998887777665432 1 11123 889999999999999999983
No 101
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=96.18 E-value=0.0019 Score=53.18 Aligned_cols=23 Identities=9% Similarity=0.159 Sum_probs=20.8
Q ss_pred cEEEEEEcCCCCChhHHHHHHhc
Q 047336 182 LSVVAILDSIGLDKTAFTAEAYN 204 (290)
Q Consensus 182 ~~Vi~IvGmgGiGKTTLa~~vy~ 204 (290)
..+|.|.|+.|+||||||+.+..
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~ 40 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAE 40 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999998866
No 102
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=96.16 E-value=0.0027 Score=52.23 Aligned_cols=24 Identities=17% Similarity=0.196 Sum_probs=21.5
Q ss_pred CcEEEEEEcCCCCChhHHHHHHhc
Q 047336 181 QLSVVAILDSIGLDKTAFTAEAYN 204 (290)
Q Consensus 181 ~~~Vi~IvGmgGiGKTTLa~~vy~ 204 (290)
.-.+|+|+|+.|+|||||++.+..
T Consensus 28 ~g~~i~l~G~~GsGKSTl~~~L~~ 51 (200)
T 4eun_A 28 PTRHVVVMGVSGSGKTTIAHGVAD 51 (200)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 356899999999999999999976
No 103
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=96.16 E-value=0.005 Score=51.18 Aligned_cols=26 Identities=15% Similarity=0.275 Sum_probs=22.4
Q ss_pred CCcEEEEEEcCCCCChhHHHHHHhcc
Q 047336 180 TQLSVVAILDSIGLDKTAFTAEAYNS 205 (290)
Q Consensus 180 ~~~~Vi~IvGmgGiGKTTLa~~vy~d 205 (290)
....+|.|+|.+|+|||||+..+...
T Consensus 36 ~~~~~i~ivG~~gvGKTtl~~~l~~~ 61 (226)
T 2hf9_A 36 HGVVAFDFMGAIGSGKTLLIEKLIDN 61 (226)
T ss_dssp TTCEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHH
Confidence 35789999999999999999887663
No 104
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=96.14 E-value=0.0027 Score=54.01 Aligned_cols=23 Identities=22% Similarity=0.159 Sum_probs=21.1
Q ss_pred cEEEEEEcCCCCChhHHHHHHhc
Q 047336 182 LSVVAILDSIGLDKTAFTAEAYN 204 (290)
Q Consensus 182 ~~Vi~IvGmgGiGKTTLa~~vy~ 204 (290)
..+|+|+|+.|+|||||++.+.+
T Consensus 27 ~~~i~l~G~~GsGKSTl~k~La~ 49 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVCQRIAQ 49 (246)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 57999999999999999999983
No 105
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=96.11 E-value=0.0047 Score=55.29 Aligned_cols=25 Identities=24% Similarity=0.167 Sum_probs=22.3
Q ss_pred CCcEEEEEEcCCCCChhHHHHHHhc
Q 047336 180 TQLSVVAILDSIGLDKTAFTAEAYN 204 (290)
Q Consensus 180 ~~~~Vi~IvGmgGiGKTTLa~~vy~ 204 (290)
....+++|+|+.|+|||||++.+..
T Consensus 127 ~~g~vi~lvG~nGaGKTTll~~Lag 151 (328)
T 3e70_C 127 EKPYVIMFVGFNGSGKTTTIAKLAN 151 (328)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3578999999999999999998876
No 106
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=96.11 E-value=0.0035 Score=59.19 Aligned_cols=46 Identities=11% Similarity=0.130 Sum_probs=37.0
Q ss_pred CcccccchhHHHHHHHHhcC-----------CCCcEEEEEEcCCCCChhHHHHHHhc
Q 047336 159 RNTVGLDDRMEELLDLLIEG-----------PTQLSVVAILDSIGLDKTAFTAEAYN 204 (290)
Q Consensus 159 ~~~vG~e~~~~~L~~~L~~~-----------~~~~~Vi~IvGmgGiGKTTLa~~vy~ 204 (290)
.+++|.+..+++|.+++... .....-+-|+|.+|+|||+||+.+.+
T Consensus 204 ~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~lAraia~ 260 (489)
T 3hu3_A 204 DDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVAN 260 (489)
T ss_dssp GGCCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCEEEEECSTTSSHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECcCCCCHHHHHHHHHH
Confidence 46899999999998877531 23345577999999999999999987
No 107
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=96.10 E-value=0.0033 Score=50.84 Aligned_cols=23 Identities=26% Similarity=0.176 Sum_probs=20.5
Q ss_pred cEEEEEEcCCCCChhHHHHHHhc
Q 047336 182 LSVVAILDSIGLDKTAFTAEAYN 204 (290)
Q Consensus 182 ~~Vi~IvGmgGiGKTTLa~~vy~ 204 (290)
..+|.|.|+.|+||||+|+.+.+
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~ 25 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVE 25 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999998865
No 108
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=96.09 E-value=0.0023 Score=52.80 Aligned_cols=22 Identities=14% Similarity=0.271 Sum_probs=20.0
Q ss_pred EEEEEEcCCCCChhHHHHHHhc
Q 047336 183 SVVAILDSIGLDKTAFTAEAYN 204 (290)
Q Consensus 183 ~Vi~IvGmgGiGKTTLa~~vy~ 204 (290)
++++|+|+.|+|||||++.+..
T Consensus 5 ~~i~lvGpsGaGKSTLl~~L~~ 26 (198)
T 1lvg_A 5 RPVVLSGPSGAGKSTLLKKLFQ 26 (198)
T ss_dssp CCEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHh
Confidence 5789999999999999999875
No 109
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=96.09 E-value=0.0031 Score=51.20 Aligned_cols=23 Identities=9% Similarity=0.154 Sum_probs=20.9
Q ss_pred cEEEEEEcCCCCChhHHHHHHhc
Q 047336 182 LSVVAILDSIGLDKTAFTAEAYN 204 (290)
Q Consensus 182 ~~Vi~IvGmgGiGKTTLa~~vy~ 204 (290)
..+|.|.|+.|+||||+|+.+.+
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~La~ 31 (196)
T 2c95_A 9 TNIIFVVGGPGSGKGTQCEKIVQ 31 (196)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 56899999999999999999875
No 110
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=96.09 E-value=0.0032 Score=52.27 Aligned_cols=24 Identities=8% Similarity=0.231 Sum_probs=21.5
Q ss_pred CcEEEEEEcCCCCChhHHHHHHhc
Q 047336 181 QLSVVAILDSIGLDKTAFTAEAYN 204 (290)
Q Consensus 181 ~~~Vi~IvGmgGiGKTTLa~~vy~ 204 (290)
.-.+|+|+|+.|+|||||++.+..
T Consensus 7 ~g~~i~l~GpsGsGKsTl~~~L~~ 30 (208)
T 3tau_A 7 RGLLIVLSGPSGVGKGTVREAVFK 30 (208)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHH
T ss_pred CCcEEEEECcCCCCHHHHHHHHHh
Confidence 356899999999999999999976
No 111
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=96.09 E-value=0.0036 Score=51.37 Aligned_cols=25 Identities=24% Similarity=0.278 Sum_probs=22.1
Q ss_pred CCcEEEEEEcCCCCChhHHHHHHhc
Q 047336 180 TQLSVVAILDSIGLDKTAFTAEAYN 204 (290)
Q Consensus 180 ~~~~Vi~IvGmgGiGKTTLa~~vy~ 204 (290)
....+|.|.|+.|+||||+++.+.+
T Consensus 13 ~~~~~I~l~G~~GsGKsT~~~~L~~ 37 (203)
T 1ukz_A 13 DQVSVIFVLGGPGAGKGTQCEKLVK 37 (203)
T ss_dssp TTCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHH
Confidence 3467999999999999999998876
No 112
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=96.07 E-value=0.005 Score=55.75 Aligned_cols=46 Identities=11% Similarity=0.107 Sum_probs=35.5
Q ss_pred CcccccchhHHHHHHHHhc----------------------------CCCCcEEEEEEcCCCCChhHHHHHHhc
Q 047336 159 RNTVGLDDRMEELLDLLIE----------------------------GPTQLSVVAILDSIGLDKTAFTAEAYN 204 (290)
Q Consensus 159 ~~~vG~e~~~~~L~~~L~~----------------------------~~~~~~Vi~IvGmgGiGKTTLa~~vy~ 204 (290)
..++|.+..++.|...+.. .......+-++|++|+||||||+.+.+
T Consensus 21 ~~viGq~~ak~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~p~~~~~~~~~~~~~ill~Gp~GtGKT~la~~la~ 94 (376)
T 1um8_A 21 NYVIGQEQAKKVFSVAVYNHYKRLSFKEKLKKQDNQDSNVELEHLEEVELSKSNILLIGPTGSGKTLMAQTLAK 94 (376)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHTTCCCCCEEEECCTTSSHHHHHHHHHH
T ss_pred hHccCcHHHHHHHHHHHHHHHHHHHhhhhhhhccccccccccccccccccCCCCEEEECCCCCCHHHHHHHHHH
Confidence 4589999999988877721 011234577999999999999999987
No 113
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=96.06 E-value=0.0026 Score=51.16 Aligned_cols=23 Identities=22% Similarity=0.306 Sum_probs=20.4
Q ss_pred cEEEEEEcCCCCChhHHHHHHhc
Q 047336 182 LSVVAILDSIGLDKTAFTAEAYN 204 (290)
Q Consensus 182 ~~Vi~IvGmgGiGKTTLa~~vy~ 204 (290)
..+|.|.|+.|+||||+++.+.+
T Consensus 11 ~~~i~i~G~~GsGKst~~~~l~~ 33 (180)
T 3iij_A 11 LPNILLTGTPGVGKTTLGKELAS 33 (180)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHH
T ss_pred CCeEEEEeCCCCCHHHHHHHHHH
Confidence 45788999999999999998875
No 114
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=96.04 E-value=0.012 Score=49.02 Aligned_cols=21 Identities=14% Similarity=0.185 Sum_probs=19.4
Q ss_pred EEEEEcCCCCChhHHHHHHhc
Q 047336 184 VVAILDSIGLDKTAFTAEAYN 204 (290)
Q Consensus 184 Vi~IvGmgGiGKTTLa~~vy~ 204 (290)
+|.|.|++|+||||.|+.+.+
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~ 22 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAK 22 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 678999999999999999987
No 115
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=96.04 E-value=0.0039 Score=51.71 Aligned_cols=39 Identities=23% Similarity=0.221 Sum_probs=28.6
Q ss_pred cchhHHHHHHHHhcCCCCcEEEEEEcCCCCChhHHHHHHhc
Q 047336 164 LDDRMEELLDLLIEGPTQLSVVAILDSIGLDKTAFTAEAYN 204 (290)
Q Consensus 164 ~e~~~~~L~~~L~~~~~~~~Vi~IvGmgGiGKTTLa~~vy~ 204 (290)
.++..+.+...+.. .+..+|.|+|.+|+|||||+..+..
T Consensus 14 ~~~~~~~~~~~~~~--~~~~~i~i~G~~g~GKTTl~~~l~~ 52 (221)
T 2wsm_A 14 NKRLAEKNREALRE--SGTVAVNIMGAIGSGKTLLIERTIE 52 (221)
T ss_dssp HHHHHHHHHHHHHH--HTCEEEEEEECTTSCHHHHHHHHHH
T ss_pred cHHHHHHHHHhhcc--cCceEEEEEcCCCCCHHHHHHHHHH
Confidence 34455555554433 3478999999999999999988765
No 116
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=96.04 E-value=0.0036 Score=50.75 Aligned_cols=24 Identities=17% Similarity=0.083 Sum_probs=21.1
Q ss_pred CcEEEEEEcCCCCChhHHHHHHhc
Q 047336 181 QLSVVAILDSIGLDKTAFTAEAYN 204 (290)
Q Consensus 181 ~~~Vi~IvGmgGiGKTTLa~~vy~ 204 (290)
+..+|.|+|+.|+||||+++.+-+
T Consensus 9 ~~~~I~l~G~~GsGKSTv~~~La~ 32 (184)
T 1y63_A 9 KGINILITGTPGTGKTSMAEMIAA 32 (184)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHH
Confidence 356899999999999999998866
No 117
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=96.03 E-value=0.0036 Score=50.47 Aligned_cols=23 Identities=17% Similarity=0.095 Sum_probs=20.3
Q ss_pred cEEEEEEcCCCCChhHHHHHHhc
Q 047336 182 LSVVAILDSIGLDKTAFTAEAYN 204 (290)
Q Consensus 182 ~~Vi~IvGmgGiGKTTLa~~vy~ 204 (290)
-.+|.+.|+.|+||||+++.+.+
T Consensus 4 g~~I~l~G~~GsGKST~~~~La~ 26 (186)
T 3cm0_A 4 GQAVIFLGPPGAGKGTQASRLAQ 26 (186)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 35789999999999999999865
No 118
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=96.03 E-value=0.012 Score=48.87 Aligned_cols=47 Identities=13% Similarity=0.273 Sum_probs=31.5
Q ss_pred CcEEEEEEcCCCCChhHHHHHHhcccccc----ccCCeeEEEECCCCCCHH
Q 047336 181 QLSVVAILDSIGLDKTAFTAEAYNSSYVK----HYFDYLAWIPAPYQYDPD 227 (290)
Q Consensus 181 ~~~Vi~IvGmgGiGKTTLa~~vy~d~~v~----~~F~~~~wV~vs~~~~~~ 227 (290)
.-.+++|+|..|+|||||++.+....... ..-...+|+.-...+...
T Consensus 24 ~G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~~~~~~ 74 (231)
T 4a74_A 24 TQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRPE 74 (231)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCCCCCHH
Confidence 45799999999999999999986521111 012347777765544443
No 119
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=96.02 E-value=0.0039 Score=55.40 Aligned_cols=25 Identities=8% Similarity=0.107 Sum_probs=22.6
Q ss_pred CCcEEEEEEcCCCCChhHHHHHHhc
Q 047336 180 TQLSVVAILDSIGLDKTAFTAEAYN 204 (290)
Q Consensus 180 ~~~~Vi~IvGmgGiGKTTLa~~vy~ 204 (290)
..-.+|+|+|..|+|||||++.+..
T Consensus 88 ~~g~ivgI~G~sGsGKSTL~~~L~g 112 (312)
T 3aez_A 88 PVPFIIGVAGSVAVGKSTTARVLQA 112 (312)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCCEEEEEECCCCchHHHHHHHHHh
Confidence 4578999999999999999999876
No 120
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=96.02 E-value=0.0026 Score=51.02 Aligned_cols=22 Identities=9% Similarity=0.214 Sum_probs=19.8
Q ss_pred EEEEEEcCCCCChhHHHHHHhc
Q 047336 183 SVVAILDSIGLDKTAFTAEAYN 204 (290)
Q Consensus 183 ~Vi~IvGmgGiGKTTLa~~vy~ 204 (290)
++|.|.|++|+||||+|+.+-.
T Consensus 5 ~~i~i~G~~GsGKsTla~~La~ 26 (175)
T 1via_A 5 KNIVFIGFMGSGKSTLARALAK 26 (175)
T ss_dssp CCEEEECCTTSCHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHH
Confidence 3689999999999999999876
No 121
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=96.02 E-value=0.0034 Score=51.98 Aligned_cols=23 Identities=13% Similarity=0.057 Sum_probs=20.5
Q ss_pred cEEEEEEcCCCCChhHHHHHHhc
Q 047336 182 LSVVAILDSIGLDKTAFTAEAYN 204 (290)
Q Consensus 182 ~~Vi~IvGmgGiGKTTLa~~vy~ 204 (290)
-.+++|+|+.|+|||||++.+..
T Consensus 20 Gei~~l~GpnGsGKSTLl~~l~g 42 (207)
T 1znw_A 20 GRVVVLSGPSAVGKSTVVRCLRE 42 (207)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHh
Confidence 45899999999999999998864
No 122
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=96.01 E-value=0.013 Score=49.04 Aligned_cols=49 Identities=10% Similarity=0.097 Sum_probs=34.4
Q ss_pred CcEEEEEEcCCCCChhHHHHHHhccccccc----cCCeeEEEECCCCCCHHHH
Q 047336 181 QLSVVAILDSIGLDKTAFTAEAYNSSYVKH----YFDYLAWIPAPYQYDPDQI 229 (290)
Q Consensus 181 ~~~Vi~IvGmgGiGKTTLa~~vy~d~~v~~----~F~~~~wV~vs~~~~~~~l 229 (290)
.-.++.|+|.+|+|||||++.+........ .-...+|++....++...+
T Consensus 23 ~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~~ 75 (243)
T 1n0w_A 23 TGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERL 75 (243)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCCCcCHHHH
Confidence 356899999999999999998876321111 1246788887776665544
No 123
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=96.01 E-value=0.0025 Score=51.49 Aligned_cols=22 Identities=9% Similarity=0.092 Sum_probs=19.7
Q ss_pred EEEEEEcCCCCChhHHHHHHhc
Q 047336 183 SVVAILDSIGLDKTAFTAEAYN 204 (290)
Q Consensus 183 ~Vi~IvGmgGiGKTTLa~~vy~ 204 (290)
++|.|.|++|+||||+|+.+-.
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~ 24 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAK 24 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 3689999999999999999866
No 124
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=96.01 E-value=0.0056 Score=52.40 Aligned_cols=40 Identities=18% Similarity=0.155 Sum_probs=29.2
Q ss_pred chhHHHHHHHHhcC---CCCcEEEEEEcCCCCChhHHHHHHhc
Q 047336 165 DDRMEELLDLLIEG---PTQLSVVAILDSIGLDKTAFTAEAYN 204 (290)
Q Consensus 165 e~~~~~L~~~L~~~---~~~~~Vi~IvGmgGiGKTTLa~~vy~ 204 (290)
+...+.++..+..+ .....+|.++|++|+||||+|+.+..
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~i~l~G~~GsGKSTla~~L~~ 54 (253)
T 2p5t_B 12 KHALARNLRSLTRGKKSSKQPIAILLGGQSGAGKTTIHRIKQK 54 (253)
T ss_dssp HHHHHHHHHHHHTTCCCCSSCEEEEEESCGGGTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCCcccCCeEEEEECCCCCCHHHHHHHHHH
Confidence 34445555555543 24467899999999999999999876
No 125
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=96.00 E-value=0.0057 Score=52.08 Aligned_cols=38 Identities=13% Similarity=-0.032 Sum_probs=27.1
Q ss_pred hHHHHHHHHhcCCCCcEEEEEEcCCCCChhHHHHHHhc
Q 047336 167 RMEELLDLLIEGPTQLSVVAILDSIGLDKTAFTAEAYN 204 (290)
Q Consensus 167 ~~~~L~~~L~~~~~~~~Vi~IvGmgGiGKTTLa~~vy~ 204 (290)
...++...+........+|.|.|+.|+||||+|+.+-+
T Consensus 14 ~~~~~~~~~~~~~~~~~~I~l~G~~GsGKsT~a~~L~~ 51 (243)
T 3tlx_A 14 LLNELKRRYACLSKPDGRYIFLGAPGSGKGTQSLNLKK 51 (243)
T ss_dssp HHHHHHHHHHHHTSCCEEEEEECCTTSSHHHHHHHHHH
T ss_pred HHHHHHHHHHhccCCCcEEEEECCCCCCHHHHHHHHHH
Confidence 33444444433234567899999999999999999865
No 126
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=96.00 E-value=0.0042 Score=52.87 Aligned_cols=24 Identities=4% Similarity=0.102 Sum_probs=21.6
Q ss_pred CcEEEEEEcCCCCChhHHHHHHhc
Q 047336 181 QLSVVAILDSIGLDKTAFTAEAYN 204 (290)
Q Consensus 181 ~~~Vi~IvGmgGiGKTTLa~~vy~ 204 (290)
.-.+|+|.|..|.|||||++.+..
T Consensus 24 ~g~iigI~G~~GsGKSTl~k~L~~ 47 (245)
T 2jeo_A 24 RPFLIGVSGGTASGKSTVCEKIME 47 (245)
T ss_dssp CSEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 457999999999999999998866
No 127
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.00 E-value=0.0054 Score=56.87 Aligned_cols=46 Identities=22% Similarity=0.212 Sum_probs=36.7
Q ss_pred CcccccchhHHHHHHHHhc-----------CCCCcEEEEEEcCCCCChhHHHHHHhc
Q 047336 159 RNTVGLDDRMEELLDLLIE-----------GPTQLSVVAILDSIGLDKTAFTAEAYN 204 (290)
Q Consensus 159 ~~~vG~e~~~~~L~~~L~~-----------~~~~~~Vi~IvGmgGiGKTTLa~~vy~ 204 (290)
.++.|.++.+++|.+.+.- +-...+=|-++|++|+|||+||+.+-+
T Consensus 172 ~digGl~~~k~~l~e~v~~pl~~p~~~~~~g~~~prGiLL~GPPGtGKT~lakAiA~ 228 (428)
T 4b4t_K 172 ADVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVAN 228 (428)
T ss_dssp GGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTTTHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCceEEEECCCCCCHHHHHHHHHH
Confidence 5689999999998886642 223345677999999999999999988
No 128
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=95.99 E-value=0.0038 Score=50.54 Aligned_cols=24 Identities=21% Similarity=0.109 Sum_probs=21.6
Q ss_pred CcEEEEEEcCCCCChhHHHHHHhc
Q 047336 181 QLSVVAILDSIGLDKTAFTAEAYN 204 (290)
Q Consensus 181 ~~~Vi~IvGmgGiGKTTLa~~vy~ 204 (290)
.-.+|.|.|+.|+||||+++.+..
T Consensus 12 ~~~~i~l~G~~GsGKsT~~~~L~~ 35 (186)
T 2yvu_A 12 KGIVVWLTGLPGSGKTTIATRLAD 35 (186)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHH
Confidence 457899999999999999999876
No 129
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=95.99 E-value=0.0027 Score=52.39 Aligned_cols=24 Identities=8% Similarity=0.272 Sum_probs=21.3
Q ss_pred CcEEEEEEcCCCCChhHHHHHHhc
Q 047336 181 QLSVVAILDSIGLDKTAFTAEAYN 204 (290)
Q Consensus 181 ~~~Vi~IvGmgGiGKTTLa~~vy~ 204 (290)
...+|.|+|+.|+|||||++.+..
T Consensus 11 ~~~~i~l~G~sGsGKsTl~~~L~~ 34 (204)
T 2qor_A 11 RIPPLVVCGPSGVGKGTLIKKVLS 34 (204)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHH
T ss_pred cCCEEEEECCCCCCHHHHHHHHHH
Confidence 356889999999999999999876
No 130
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=95.97 E-value=0.0073 Score=54.49 Aligned_cols=37 Identities=19% Similarity=0.129 Sum_probs=28.1
Q ss_pred HHHHHHHHhcCCCCcEEEEEEcCCCCChhHHHHHHhc
Q 047336 168 MEELLDLLIEGPTQLSVVAILDSIGLDKTAFTAEAYN 204 (290)
Q Consensus 168 ~~~L~~~L~~~~~~~~Vi~IvGmgGiGKTTLa~~vy~ 204 (290)
...+.+.+.....+..+|+|+|.+|+|||||+..+..
T Consensus 65 ~~~~~~~~~~~~~~~~~I~i~G~~G~GKSTl~~~L~~ 101 (355)
T 3p32_A 65 AQQLLLRLLPDSGNAHRVGITGVPGVGKSTAIEALGM 101 (355)
T ss_dssp HHHHHHHHGGGCCCSEEEEEECCTTSSHHHHHHHHHH
T ss_pred HHHHHHHhHhhcCCceEEEEECCCCCCHHHHHHHHHH
Confidence 4455555554445688999999999999999988754
No 131
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=95.97 E-value=0.004 Score=51.13 Aligned_cols=23 Identities=13% Similarity=-0.002 Sum_probs=20.9
Q ss_pred cEEEEEEcCCCCChhHHHHHHhc
Q 047336 182 LSVVAILDSIGLDKTAFTAEAYN 204 (290)
Q Consensus 182 ~~Vi~IvGmgGiGKTTLa~~vy~ 204 (290)
..+|.|.|+.|+||||+|+.+.+
T Consensus 4 ~~~I~i~G~~GsGKsT~~~~L~~ 26 (213)
T 2plr_A 4 GVLIAFEGIDGSGKSSQATLLKD 26 (213)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHHHH
Confidence 35899999999999999999977
No 132
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=95.97 E-value=0.0038 Score=53.57 Aligned_cols=22 Identities=14% Similarity=0.042 Sum_probs=19.7
Q ss_pred EEEEEEcCCCCChhHHHHHHhc
Q 047336 183 SVVAILDSIGLDKTAFTAEAYN 204 (290)
Q Consensus 183 ~Vi~IvGmgGiGKTTLa~~vy~ 204 (290)
.+|.|+|+.|+||||||+.+..
T Consensus 2 ~li~I~G~~GSGKSTla~~La~ 23 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQ 23 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHh
Confidence 5789999999999999998854
No 133
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=95.95 E-value=0.0036 Score=53.65 Aligned_cols=22 Identities=14% Similarity=0.154 Sum_probs=20.3
Q ss_pred cEEEEEEcCCCCChhHHHHHHh
Q 047336 182 LSVVAILDSIGLDKTAFTAEAY 203 (290)
Q Consensus 182 ~~Vi~IvGmgGiGKTTLa~~vy 203 (290)
-.+|+|+|+.|+|||||++.+.
T Consensus 27 g~~I~I~G~~GsGKSTl~k~La 48 (252)
T 4e22_A 27 APVITVDGPSGAGKGTLCKALA 48 (252)
T ss_dssp SCEEEEECCTTSSHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHH
Confidence 4699999999999999999887
No 134
>3fwy_A Light-independent protochlorophyllide reductase I ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2}
Probab=95.95 E-value=0.0041 Score=55.30 Aligned_cols=24 Identities=21% Similarity=0.253 Sum_probs=20.1
Q ss_pred CCcEEEEEEcCCCCChhHHHHHHh
Q 047336 180 TQLSVVAILDSIGLDKTAFTAEAY 203 (290)
Q Consensus 180 ~~~~Vi~IvGmgGiGKTTLa~~vy 203 (290)
.+.+||+|.|-|||||||.+-.+-
T Consensus 46 ~~aKVIAIaGKGGVGKTTtavNLA 69 (314)
T 3fwy_A 46 TGAKVFAVYGKGGIGKSTTSSNLS 69 (314)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHH
T ss_pred CCceEEEEECCCccCHHHHHHHHH
Confidence 357999999999999999887653
No 135
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=95.94 E-value=0.0061 Score=57.34 Aligned_cols=47 Identities=15% Similarity=0.226 Sum_probs=35.1
Q ss_pred CcccccchhHHHHHHHHhc--C--------CCCcEEEEEEcCCCCChhHHHHHHhcc
Q 047336 159 RNTVGLDDRMEELLDLLIE--G--------PTQLSVVAILDSIGLDKTAFTAEAYNS 205 (290)
Q Consensus 159 ~~~vG~e~~~~~L~~~L~~--~--------~~~~~Vi~IvGmgGiGKTTLa~~vy~d 205 (290)
.+++|.++.+++|.+.+.. . -.-.+-+-++|++|+||||||+.+.+.
T Consensus 16 ~di~G~~~~~~~l~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~Laraia~~ 72 (476)
T 2ce7_A 16 KDVGGAEEAIEELKEVVEFLKDPSKFNRIGARMPKGILLVGPPGTGKTLLARAVAGE 72 (476)
T ss_dssp GGCCSCHHHHHHHHHHHHHHHCTHHHHTTTCCCCSEEEEECCTTSSHHHHHHHHHHH
T ss_pred HHhCCcHHHHHHHHHHHHHhhChHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHH
Confidence 4699999988888776532 1 111233679999999999999999983
No 136
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=95.94 E-value=0.0043 Score=53.40 Aligned_cols=23 Identities=13% Similarity=0.329 Sum_probs=21.0
Q ss_pred cEEEEEEcCCCCChhHHHHHHhc
Q 047336 182 LSVVAILDSIGLDKTAFTAEAYN 204 (290)
Q Consensus 182 ~~Vi~IvGmgGiGKTTLa~~vy~ 204 (290)
..+|.|.|++|+||||+|+.+..
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~ 26 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAK 26 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHH
Confidence 56899999999999999999876
No 137
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=95.93 E-value=0.0036 Score=50.94 Aligned_cols=23 Identities=13% Similarity=0.164 Sum_probs=20.8
Q ss_pred cEEEEEEcCCCCChhHHHHHHhc
Q 047336 182 LSVVAILDSIGLDKTAFTAEAYN 204 (290)
Q Consensus 182 ~~Vi~IvGmgGiGKTTLa~~vy~ 204 (290)
..+|.|.|+.|+||||+|+.+..
T Consensus 12 ~~~I~l~G~~GsGKsT~a~~L~~ 34 (199)
T 2bwj_A 12 CKIIFIIGGPGSGKGTQCEKLVE 34 (199)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999876
No 138
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=95.93 E-value=0.0042 Score=50.12 Aligned_cols=23 Identities=26% Similarity=0.205 Sum_probs=20.8
Q ss_pred cEEEEEEcCCCCChhHHHHHHhc
Q 047336 182 LSVVAILDSIGLDKTAFTAEAYN 204 (290)
Q Consensus 182 ~~Vi~IvGmgGiGKTTLa~~vy~ 204 (290)
..+|.|.|+.|+||||+|+.+.+
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~ 28 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVR 28 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999876
No 139
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=95.93 E-value=0.0039 Score=50.37 Aligned_cols=24 Identities=13% Similarity=0.080 Sum_probs=21.5
Q ss_pred CcEEEEEEcCCCCChhHHHHHHhc
Q 047336 181 QLSVVAILDSIGLDKTAFTAEAYN 204 (290)
Q Consensus 181 ~~~Vi~IvGmgGiGKTTLa~~vy~ 204 (290)
...+++|+|..|+|||||+..+..
T Consensus 3 ~~~~i~i~G~sGsGKTTl~~~L~~ 26 (169)
T 1xjc_A 3 AMNVWQVVGYKHSGKTTLMEKWVA 26 (169)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 467999999999999999999887
No 140
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=95.91 E-value=0.0032 Score=50.56 Aligned_cols=23 Identities=17% Similarity=0.173 Sum_probs=16.8
Q ss_pred cEEEEEEcCCCCChhHHHHHHhc
Q 047336 182 LSVVAILDSIGLDKTAFTAEAYN 204 (290)
Q Consensus 182 ~~Vi~IvGmgGiGKTTLa~~vy~ 204 (290)
..+|.|.|+.|+||||+|+.+.+
T Consensus 5 ~~~I~l~G~~GsGKST~a~~La~ 27 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAHTLHE 27 (183)
T ss_dssp CCEEEEECCC----CHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999876
No 141
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=95.90 E-value=0.01 Score=48.06 Aligned_cols=21 Identities=10% Similarity=-0.037 Sum_probs=19.7
Q ss_pred EEEEEcCCCCChhHHHHHHhc
Q 047336 184 VVAILDSIGLDKTAFTAEAYN 204 (290)
Q Consensus 184 Vi~IvGmgGiGKTTLa~~vy~ 204 (290)
.|+|.|+.|+||||+++.+.+
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~ 22 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQ 22 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999987
No 142
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=95.90 E-value=0.0035 Score=51.44 Aligned_cols=21 Identities=14% Similarity=0.284 Sum_probs=18.8
Q ss_pred EEEEEcCCCCChhHHHHHHhc
Q 047336 184 VVAILDSIGLDKTAFTAEAYN 204 (290)
Q Consensus 184 Vi~IvGmgGiGKTTLa~~vy~ 204 (290)
.|.|+|+.|+|||||++.+..
T Consensus 3 pIVi~GPSG~GK~Tl~~~L~~ 23 (186)
T 1ex7_A 3 PIVISGPSGTGKSTLLKKLFA 23 (186)
T ss_dssp CEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 367999999999999999876
No 143
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=95.89 E-value=0.0046 Score=54.87 Aligned_cols=42 Identities=21% Similarity=0.165 Sum_probs=35.0
Q ss_pred CcccccchhHHHHHHHHhcCCCCcEEEEEEcCCCCChhHHHHHHhc
Q 047336 159 RNTVGLDDRMEELLDLLIEGPTQLSVVAILDSIGLDKTAFTAEAYN 204 (290)
Q Consensus 159 ~~~vG~e~~~~~L~~~L~~~~~~~~Vi~IvGmgGiGKTTLa~~vy~ 204 (290)
..++|.+..++.+...+..+. -+-++|.+|+|||+||+.+.+
T Consensus 27 ~~i~g~~~~~~~l~~~l~~~~----~vll~G~pGtGKT~la~~la~ 68 (331)
T 2r44_A 27 KVVVGQKYMINRLLIGICTGG----HILLEGVPGLAKTLSVNTLAK 68 (331)
T ss_dssp TTCCSCHHHHHHHHHHHHHTC----CEEEESCCCHHHHHHHHHHHH
T ss_pred cceeCcHHHHHHHHHHHHcCC----eEEEECCCCCcHHHHHHHHHH
Confidence 358999999988888887642 466899999999999999877
No 144
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=95.89 E-value=0.004 Score=50.35 Aligned_cols=21 Identities=24% Similarity=0.275 Sum_probs=19.7
Q ss_pred EEEEEcCCCCChhHHHHHHhc
Q 047336 184 VVAILDSIGLDKTAFTAEAYN 204 (290)
Q Consensus 184 Vi~IvGmgGiGKTTLa~~vy~ 204 (290)
+|+|.|+.|+||||+++.+.+
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~ 22 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYE 22 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999977
No 145
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=95.89 E-value=0.0033 Score=50.02 Aligned_cols=22 Identities=14% Similarity=0.125 Sum_probs=19.9
Q ss_pred EEEEEEcCCCCChhHHHHHHhc
Q 047336 183 SVVAILDSIGLDKTAFTAEAYN 204 (290)
Q Consensus 183 ~Vi~IvGmgGiGKTTLa~~vy~ 204 (290)
.+|.|.|+.|+||||+|+.+-+
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~ 24 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELAR 24 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999999876
No 146
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=95.89 E-value=0.0041 Score=49.24 Aligned_cols=21 Identities=5% Similarity=0.004 Sum_probs=19.5
Q ss_pred EEEEEcCCCCChhHHHHHHhc
Q 047336 184 VVAILDSIGLDKTAFTAEAYN 204 (290)
Q Consensus 184 Vi~IvGmgGiGKTTLa~~vy~ 204 (290)
.|.|.|+.|+||||+|+.+-+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSR 22 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999876
No 147
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.88 E-value=0.006 Score=56.66 Aligned_cols=46 Identities=22% Similarity=0.316 Sum_probs=36.5
Q ss_pred CcccccchhHHHHHHHHhc-----------CCCCcEEEEEEcCCCCChhHHHHHHhc
Q 047336 159 RNTVGLDDRMEELLDLLIE-----------GPTQLSVVAILDSIGLDKTAFTAEAYN 204 (290)
Q Consensus 159 ~~~vG~e~~~~~L~~~L~~-----------~~~~~~Vi~IvGmgGiGKTTLa~~vy~ 204 (290)
.++.|.++.+++|.+.+.. +-...+=|-++|++|+|||+||+.+-+
T Consensus 181 ~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~~prGvLLyGPPGTGKTllAkAiA~ 237 (434)
T 4b4t_M 181 SDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAA 237 (434)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHH
T ss_pred HhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeeEEECcCCCCHHHHHHHHHH
Confidence 4689999999998876431 123356677899999999999999988
No 148
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.86 E-value=0.0067 Score=56.38 Aligned_cols=46 Identities=20% Similarity=0.234 Sum_probs=36.4
Q ss_pred CcccccchhHHHHHHHHhc-----------CCCCcEEEEEEcCCCCChhHHHHHHhc
Q 047336 159 RNTVGLDDRMEELLDLLIE-----------GPTQLSVVAILDSIGLDKTAFTAEAYN 204 (290)
Q Consensus 159 ~~~vG~e~~~~~L~~~L~~-----------~~~~~~Vi~IvGmgGiGKTTLa~~vy~ 204 (290)
.++.|.++.+++|.+.+.- +-...+=|-++|++|+|||+||+.+-+
T Consensus 181 ~digGl~~~k~~l~e~v~~pl~~p~~f~~~g~~~prGvLL~GPPGtGKTllAkAiA~ 237 (437)
T 4b4t_L 181 DGIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAA 237 (437)
T ss_dssp GGGCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHH
T ss_pred hHhCChHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeEEEECCCCCcHHHHHHHHHH
Confidence 4688999999888876642 123356677899999999999999988
No 149
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=95.86 E-value=0.0095 Score=53.06 Aligned_cols=24 Identities=25% Similarity=0.306 Sum_probs=21.3
Q ss_pred CcEEEEEEcCCCCChhHHHHHHhc
Q 047336 181 QLSVVAILDSIGLDKTAFTAEAYN 204 (290)
Q Consensus 181 ~~~Vi~IvGmgGiGKTTLa~~vy~ 204 (290)
...+|+|+|.+|+||||++..+..
T Consensus 104 ~~~vI~ivG~~G~GKTT~~~~LA~ 127 (320)
T 1zu4_A 104 RLNIFMLVGVNGTGKTTSLAKMAN 127 (320)
T ss_dssp SCEEEEEESSTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 468999999999999999988765
No 150
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=95.86 E-value=0.0085 Score=52.45 Aligned_cols=25 Identities=12% Similarity=0.187 Sum_probs=22.1
Q ss_pred CCcEEEEEEcCCCCChhHHHHHHhc
Q 047336 180 TQLSVVAILDSIGLDKTAFTAEAYN 204 (290)
Q Consensus 180 ~~~~Vi~IvGmgGiGKTTLa~~vy~ 204 (290)
....+|-|.|++|+||||||+.+.+
T Consensus 31 ~~~~livl~G~sGsGKSTla~~L~~ 55 (287)
T 1gvn_B 31 ESPTAFLLGGQPGSGKTSLRSAIFE 55 (287)
T ss_dssp SSCEEEEEECCTTSCTHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3467899999999999999999976
No 151
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=95.86 E-value=0.0033 Score=52.62 Aligned_cols=23 Identities=17% Similarity=0.265 Sum_probs=20.6
Q ss_pred cEEEEEEcCCCCChhHHHHHHhc
Q 047336 182 LSVVAILDSIGLDKTAFTAEAYN 204 (290)
Q Consensus 182 ~~Vi~IvGmgGiGKTTLa~~vy~ 204 (290)
-.+++|+|+.|+|||||++.+..
T Consensus 23 G~~~~lvGpsGsGKSTLl~~L~g 45 (218)
T 1z6g_A 23 IYPLVICGPSGVGKGTLIKKLLN 45 (218)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHh
Confidence 45799999999999999999876
No 152
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=95.86 E-value=0.0074 Score=53.80 Aligned_cols=25 Identities=12% Similarity=0.138 Sum_probs=22.3
Q ss_pred CCcEEEEEEcCCCCChhHHHHHHhc
Q 047336 180 TQLSVVAILDSIGLDKTAFTAEAYN 204 (290)
Q Consensus 180 ~~~~Vi~IvGmgGiGKTTLa~~vy~ 204 (290)
....+|+|.|..|+|||||++.+..
T Consensus 90 ~~p~iigI~GpsGSGKSTl~~~L~~ 114 (321)
T 3tqc_A 90 KVPYIIGIAGSVAVGKSTTSRVLKA 114 (321)
T ss_dssp CCCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 4577999999999999999998865
No 153
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=95.85 E-value=0.0051 Score=50.43 Aligned_cols=24 Identities=17% Similarity=0.097 Sum_probs=21.0
Q ss_pred CcEEEEEEcCCCCChhHHHHHHhc
Q 047336 181 QLSVVAILDSIGLDKTAFTAEAYN 204 (290)
Q Consensus 181 ~~~Vi~IvGmgGiGKTTLa~~vy~ 204 (290)
...+|.|.|+.|+||||+|+.+-.
T Consensus 19 ~~~~I~l~G~~GsGKST~a~~La~ 42 (201)
T 2cdn_A 19 SHMRVLLLGPPGAGKGTQAVKLAE 42 (201)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 345899999999999999999865
No 154
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=95.82 E-value=0.0055 Score=48.83 Aligned_cols=25 Identities=20% Similarity=0.259 Sum_probs=21.9
Q ss_pred CCcEEEEEEcCCCCChhHHHHHHhc
Q 047336 180 TQLSVVAILDSIGLDKTAFTAEAYN 204 (290)
Q Consensus 180 ~~~~Vi~IvGmgGiGKTTLa~~vy~ 204 (290)
..-.+++++|..|.|||||++.+..
T Consensus 31 ~~Ge~v~L~G~nGaGKTTLlr~l~g 55 (158)
T 1htw_A 31 EKAIMVYLNGDLGAGKTTLTRGMLQ 55 (158)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHH
Confidence 3456999999999999999998876
No 155
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=95.81 E-value=0.0049 Score=57.36 Aligned_cols=29 Identities=28% Similarity=0.311 Sum_probs=24.0
Q ss_pred cEEEEEEcCCCCChhHHHHHHhccccccccC
Q 047336 182 LSVVAILDSIGLDKTAFTAEAYNSSYVKHYF 212 (290)
Q Consensus 182 ~~Vi~IvGmgGiGKTTLa~~vy~d~~v~~~F 212 (290)
...+.|+|++|+||||||+.+.+ .....|
T Consensus 130 ~~~lll~Gp~G~GKTtLa~aia~--~l~~~~ 158 (440)
T 2z4s_A 130 YNPLFIYGGVGLGKTHLLQSIGN--YVVQNE 158 (440)
T ss_dssp SCCEEEECSSSSSHHHHHHHHHH--HHHHHC
T ss_pred CCeEEEECCCCCCHHHHHHHHHH--HHHHhC
Confidence 67788999999999999999998 444433
No 156
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=95.81 E-value=0.0052 Score=50.59 Aligned_cols=25 Identities=20% Similarity=0.251 Sum_probs=22.6
Q ss_pred CCcEEEEEEcCCCCChhHHHHHHhc
Q 047336 180 TQLSVVAILDSIGLDKTAFTAEAYN 204 (290)
Q Consensus 180 ~~~~Vi~IvGmgGiGKTTLa~~vy~ 204 (290)
..-.+|+|.|+.|+||||+++.+-+
T Consensus 10 ~~~~iIgltG~~GSGKSTva~~L~~ 34 (192)
T 2grj_A 10 HHHMVIGVTGKIGTGKSTVCEILKN 34 (192)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHH
T ss_pred ccceEEEEECCCCCCHHHHHHHHHH
Confidence 4578999999999999999999876
No 157
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=95.77 E-value=0.0049 Score=54.55 Aligned_cols=24 Identities=25% Similarity=0.202 Sum_probs=21.4
Q ss_pred CcEEEEEEcCCCCChhHHHHHHhc
Q 047336 181 QLSVVAILDSIGLDKTAFTAEAYN 204 (290)
Q Consensus 181 ~~~Vi~IvGmgGiGKTTLa~~vy~ 204 (290)
...+++|+|+.|+|||||++.+..
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lag 124 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGR 124 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHH
Confidence 467999999999999999998875
No 158
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=95.77 E-value=0.0024 Score=52.72 Aligned_cols=21 Identities=19% Similarity=0.215 Sum_probs=19.4
Q ss_pred EEEEEcCCCCChhHHHHHHhc
Q 047336 184 VVAILDSIGLDKTAFTAEAYN 204 (290)
Q Consensus 184 Vi~IvGmgGiGKTTLa~~vy~ 204 (290)
+|+|+|..|+||||+++.+..
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~ 22 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSG 22 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 789999999999999999865
No 159
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=95.76 E-value=0.006 Score=54.24 Aligned_cols=45 Identities=18% Similarity=0.152 Sum_probs=32.2
Q ss_pred CcccccchhHHHHHHHHhcCCCCcEEEEEEcCCCCChhHHHHHHhcc
Q 047336 159 RNTVGLDDRMEELLDLLIEGPTQLSVVAILDSIGLDKTAFTAEAYNS 205 (290)
Q Consensus 159 ~~~vG~e~~~~~L~~~L~~~~~~~~Vi~IvGmgGiGKTTLa~~vy~d 205 (290)
.+++|.+..+..+...+.... ..-+-++|.+|+|||+||+.+.+.
T Consensus 24 ~~i~G~~~~~~~l~~~~~~~~--~~~vLl~G~~GtGKT~la~~la~~ 68 (350)
T 1g8p_A 24 SAIVGQEDMKLALLLTAVDPG--IGGVLVFGDRGTGKSTAVRALAAL 68 (350)
T ss_dssp GGSCSCHHHHHHHHHHHHCGG--GCCEEEECCGGGCTTHHHHHHHHH
T ss_pred hhccChHHHHHHHHHHhhCCC--CceEEEECCCCccHHHHHHHHHHh
Confidence 358999886665544444322 222779999999999999999873
No 160
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=95.75 E-value=0.01 Score=56.16 Aligned_cols=43 Identities=14% Similarity=0.132 Sum_probs=35.4
Q ss_pred CcccccchhHHHHHHHHhcCCCCcEEEEEEcCCCCChhHHHHHHhcc
Q 047336 159 RNTVGLDDRMEELLDLLIEGPTQLSVVAILDSIGLDKTAFTAEAYNS 205 (290)
Q Consensus 159 ~~~vG~e~~~~~L~~~L~~~~~~~~Vi~IvGmgGiGKTTLa~~vy~d 205 (290)
..++|.+..++.+...+..+. -+-++|++|+|||+||+.+.+.
T Consensus 22 ~~ivGq~~~i~~l~~al~~~~----~VLL~GpPGtGKT~LAraLa~~ 64 (500)
T 3nbx_X 22 KGLYERSHAIRLCLLAALSGE----SVFLLGPPGIAKSLIARRLKFA 64 (500)
T ss_dssp TTCSSCHHHHHHHHHHHHHTC----EEEEECCSSSSHHHHHHHGGGG
T ss_pred hhhHHHHHHHHHHHHHHhcCC----eeEeecCchHHHHHHHHHHHHH
Confidence 347899998888888777543 4668999999999999999983
No 161
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=95.74 E-value=0.0063 Score=50.55 Aligned_cols=23 Identities=22% Similarity=0.274 Sum_probs=20.7
Q ss_pred cEEEEEEcCCCCChhHHHHHHhc
Q 047336 182 LSVVAILDSIGLDKTAFTAEAYN 204 (290)
Q Consensus 182 ~~Vi~IvGmgGiGKTTLa~~vy~ 204 (290)
..+|+|.|+.|+||||+++.+-.
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999864
No 162
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=95.73 E-value=0.0061 Score=53.14 Aligned_cols=24 Identities=17% Similarity=0.200 Sum_probs=21.5
Q ss_pred CCcEEEEEEcCCCCChhHHHHHHh
Q 047336 180 TQLSVVAILDSIGLDKTAFTAEAY 203 (290)
Q Consensus 180 ~~~~Vi~IvGmgGiGKTTLa~~vy 203 (290)
....+|+|.|+.|+||||+|+.+-
T Consensus 73 ~~~~iI~I~G~~GSGKSTva~~La 96 (281)
T 2f6r_A 73 SGLYVLGLTGISGSGKSSVAQRLK 96 (281)
T ss_dssp TTCEEEEEEECTTSCHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHH
Confidence 346799999999999999999886
No 163
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=95.73 E-value=0.0055 Score=50.44 Aligned_cols=23 Identities=4% Similarity=-0.022 Sum_probs=21.1
Q ss_pred cEEEEEEcCCCCChhHHHHHHhc
Q 047336 182 LSVVAILDSIGLDKTAFTAEAYN 204 (290)
Q Consensus 182 ~~Vi~IvGmgGiGKTTLa~~vy~ 204 (290)
..+|.|.|+.|+||||+++.+.+
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~L~~ 31 (215)
T 1nn5_A 9 GALIVLEGVDRAGKSTQSRKLVE 31 (215)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999987
No 164
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=95.72 E-value=0.0053 Score=51.72 Aligned_cols=23 Identities=26% Similarity=0.332 Sum_probs=20.5
Q ss_pred CcEEEEEEcCCCCChhHHHHHHh
Q 047336 181 QLSVVAILDSIGLDKTAFTAEAY 203 (290)
Q Consensus 181 ~~~Vi~IvGmgGiGKTTLa~~vy 203 (290)
.-.+++|+|+.|+|||||++.+.
T Consensus 29 ~G~~~~l~GpnGsGKSTLl~~i~ 51 (251)
T 2ehv_A 29 EGTTVLLTGGTGTGKTTFAAQFI 51 (251)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHH
Confidence 35689999999999999999876
No 165
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.71 E-value=0.0065 Score=55.82 Aligned_cols=46 Identities=20% Similarity=0.239 Sum_probs=35.9
Q ss_pred CcccccchhHHHHHHHHhc-----------CCCCcEEEEEEcCCCCChhHHHHHHhc
Q 047336 159 RNTVGLDDRMEELLDLLIE-----------GPTQLSVVAILDSIGLDKTAFTAEAYN 204 (290)
Q Consensus 159 ~~~vG~e~~~~~L~~~L~~-----------~~~~~~Vi~IvGmgGiGKTTLa~~vy~ 204 (290)
+++.|.++.+++|.+.+.- +-...+=|-++|++|+|||+||+.+-+
T Consensus 148 ~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTllAkAiA~ 204 (405)
T 4b4t_J 148 DMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAH 204 (405)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCCEEEESCSSSSHHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCceEEeCCCCCCHHHHHHHHHH
Confidence 4688999999888876532 223345567899999999999999988
No 166
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=95.70 E-value=0.0046 Score=50.78 Aligned_cols=21 Identities=24% Similarity=0.264 Sum_probs=19.2
Q ss_pred EEEEEcCCCCChhHHHHHHhc
Q 047336 184 VVAILDSIGLDKTAFTAEAYN 204 (290)
Q Consensus 184 Vi~IvGmgGiGKTTLa~~vy~ 204 (290)
+++|+|..|+|||||++.+..
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g 23 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASE 23 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHh
Confidence 689999999999999998876
No 167
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=95.68 E-value=0.0051 Score=53.96 Aligned_cols=25 Identities=12% Similarity=0.114 Sum_probs=21.7
Q ss_pred CcEEEEEEcCCCCChhHHHHHHhcc
Q 047336 181 QLSVVAILDSIGLDKTAFTAEAYNS 205 (290)
Q Consensus 181 ~~~Vi~IvGmgGiGKTTLa~~vy~d 205 (290)
....+-++|++|+|||+||+.+.+.
T Consensus 35 ~p~~lLl~GppGtGKT~la~aiA~~ 59 (293)
T 3t15_A 35 VPLILGIWGGKGQGKSFQCELVFRK 59 (293)
T ss_dssp CCSEEEEEECTTSCHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3567788999999999999999983
No 168
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=95.66 E-value=0.0054 Score=50.47 Aligned_cols=23 Identities=4% Similarity=-0.171 Sum_probs=21.1
Q ss_pred cEEEEEEcCCCCChhHHHHHHhc
Q 047336 182 LSVVAILDSIGLDKTAFTAEAYN 204 (290)
Q Consensus 182 ~~Vi~IvGmgGiGKTTLa~~vy~ 204 (290)
..+|.|.|+.|+||||+++.+.+
T Consensus 10 ~~~I~l~G~~GsGKST~~~~L~~ 32 (212)
T 2wwf_A 10 GKFIVFEGLDRSGKSTQSKLLVE 32 (212)
T ss_dssp SCEEEEEESTTSSHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHH
Confidence 46899999999999999999976
No 169
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=95.66 E-value=0.0058 Score=50.97 Aligned_cols=22 Identities=23% Similarity=0.155 Sum_probs=20.0
Q ss_pred EEEEEEcCCCCChhHHHHHHhc
Q 047336 183 SVVAILDSIGLDKTAFTAEAYN 204 (290)
Q Consensus 183 ~Vi~IvGmgGiGKTTLa~~vy~ 204 (290)
.+++|+|+.|.|||||++.+..
T Consensus 23 e~~~liG~nGsGKSTLl~~l~G 44 (208)
T 3b85_A 23 TIVFGLGPAGSGKTYLAMAKAV 44 (208)
T ss_dssp SEEEEECCTTSSTTHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhc
Confidence 3799999999999999999875
No 170
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=95.66 E-value=0.0059 Score=52.08 Aligned_cols=24 Identities=17% Similarity=0.241 Sum_probs=21.7
Q ss_pred CCcEEEEEEcCCCCChhHHHHHHhc
Q 047336 180 TQLSVVAILDSIGLDKTAFTAEAYN 204 (290)
Q Consensus 180 ~~~~Vi~IvGmgGiGKTTLa~~vy~ 204 (290)
.. .+++|+|+.|.|||||.+.+..
T Consensus 23 ~~-e~~~liG~nGsGKSTLl~~l~G 46 (240)
T 2onk_A 23 GR-DYCVLLGPTGAGKSVFLELIAG 46 (240)
T ss_dssp CS-SEEEEECCTTSSHHHHHHHHHT
T ss_pred CC-EEEEEECCCCCCHHHHHHHHhC
Confidence 45 7999999999999999999976
No 171
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=95.66 E-value=0.022 Score=46.87 Aligned_cols=49 Identities=8% Similarity=0.038 Sum_probs=31.6
Q ss_pred EEEEEcCCCCChhHHHHHHhccccccccCCeeEEEECCCCCCHHHHHHHHH
Q 047336 184 VVAILDSIGLDKTAFTAEAYNSSYVKHYFDYLAWIPAPYQYDPDQILDTVT 234 (290)
Q Consensus 184 Vi~IvGmgGiGKTTLa~~vy~d~~v~~~F~~~~wV~vs~~~~~~~ll~~Il 234 (290)
.|+|=|.-|+||||.++.+.+ ..+.+-..+++..-+..-...+.+++++
T Consensus 2 fI~~EG~DGsGKsTq~~~L~~--~L~~~g~~v~~treP~~t~~~~~ir~~l 50 (197)
T 3hjn_A 2 FITFEGIDGSGKSTQIQLLAQ--YLEKRGKKVILKREPGGTETGEKIRKIL 50 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHH--HHHHTTCCEEEEESSCSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH--HHHHCCCcEEEEECCCCCcHHHHHHHHh
Confidence 477889999999999999988 4443333344444444333445555554
No 172
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=95.65 E-value=0.0059 Score=51.89 Aligned_cols=23 Identities=17% Similarity=0.096 Sum_probs=20.9
Q ss_pred cEEEEEEcCCCCChhHHHHHHhc
Q 047336 182 LSVVAILDSIGLDKTAFTAEAYN 204 (290)
Q Consensus 182 ~~Vi~IvGmgGiGKTTLa~~vy~ 204 (290)
=.+++|+|+.|.|||||.+.+..
T Consensus 31 Ge~~~iiG~nGsGKSTLl~~l~G 53 (235)
T 3tif_A 31 GEFVSIMGPSGSGKSTMLNIIGC 53 (235)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCcHHHHHHHHhc
Confidence 46899999999999999999975
No 173
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=95.64 E-value=0.0056 Score=51.30 Aligned_cols=23 Identities=17% Similarity=0.200 Sum_probs=20.8
Q ss_pred cEEEEEEcCCCCChhHHHHHHhc
Q 047336 182 LSVVAILDSIGLDKTAFTAEAYN 204 (290)
Q Consensus 182 ~~Vi~IvGmgGiGKTTLa~~vy~ 204 (290)
...|.|.|+.|+||||+|+.+-+
T Consensus 7 ~~~I~l~G~~GsGKsT~a~~La~ 29 (227)
T 1zd8_A 7 LLRAVIMGAPGSGKGTVSSRITT 29 (227)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999876
No 174
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=95.63 E-value=0.0073 Score=48.49 Aligned_cols=23 Identities=17% Similarity=0.044 Sum_probs=20.8
Q ss_pred cEEEEEEcCCCCChhHHHHHHhc
Q 047336 182 LSVVAILDSIGLDKTAFTAEAYN 204 (290)
Q Consensus 182 ~~Vi~IvGmgGiGKTTLa~~vy~ 204 (290)
-.+|.|.|+.|+||||+++.+..
T Consensus 5 g~~i~l~G~~GsGKST~~~~L~~ 27 (179)
T 2pez_A 5 GCTVWLTGLSGAGKTTVSMALEE 27 (179)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 46889999999999999999876
No 175
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=95.62 E-value=0.0057 Score=50.62 Aligned_cols=24 Identities=4% Similarity=0.227 Sum_probs=21.5
Q ss_pred CcEEEEEEcCCCCChhHHHHHHhc
Q 047336 181 QLSVVAILDSIGLDKTAFTAEAYN 204 (290)
Q Consensus 181 ~~~Vi~IvGmgGiGKTTLa~~vy~ 204 (290)
.-.+|.|+|+.|+|||||++.+..
T Consensus 18 ~g~~ivl~GPSGaGKsTL~~~L~~ 41 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHIKNALLS 41 (197)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCEEEEECcCCCCHHHHHHHHHh
Confidence 457899999999999999999886
No 176
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=95.62 E-value=0.0059 Score=51.47 Aligned_cols=23 Identities=17% Similarity=0.062 Sum_probs=20.8
Q ss_pred cEEEEEEcCCCCChhHHHHHHhc
Q 047336 182 LSVVAILDSIGLDKTAFTAEAYN 204 (290)
Q Consensus 182 ~~Vi~IvGmgGiGKTTLa~~vy~ 204 (290)
=.+++|+|+.|.|||||.+.+..
T Consensus 30 Ge~~~iiG~nGsGKSTLl~~l~G 52 (224)
T 2pcj_A 30 GEFVSIIGASGSGKSTLLYILGL 52 (224)
T ss_dssp TCEEEEEECTTSCHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 35899999999999999999976
No 177
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=95.62 E-value=0.0063 Score=50.68 Aligned_cols=23 Identities=9% Similarity=0.071 Sum_probs=20.6
Q ss_pred cEEEEEEcCCCCChhHHHHHHhc
Q 047336 182 LSVVAILDSIGLDKTAFTAEAYN 204 (290)
Q Consensus 182 ~~Vi~IvGmgGiGKTTLa~~vy~ 204 (290)
...|.|.|+.|+||||+|+.+.+
T Consensus 4 ~~~I~l~G~~GsGKsT~a~~La~ 26 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQAPNLQE 26 (220)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 45789999999999999999876
No 178
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=95.61 E-value=0.006 Score=51.30 Aligned_cols=24 Identities=13% Similarity=0.156 Sum_probs=21.6
Q ss_pred CcEEEEEEcCCCCChhHHHHHHhc
Q 047336 181 QLSVVAILDSIGLDKTAFTAEAYN 204 (290)
Q Consensus 181 ~~~Vi~IvGmgGiGKTTLa~~vy~ 204 (290)
.-.+++|+|+.|+|||||.+.+..
T Consensus 15 ~G~ii~l~GpsGsGKSTLlk~L~g 38 (219)
T 1s96_A 15 QGTLYIVSAPSGAGKSSLIQALLK 38 (219)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHhc
Confidence 356899999999999999999987
No 179
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=95.61 E-value=0.006 Score=49.86 Aligned_cols=23 Identities=9% Similarity=-0.080 Sum_probs=20.9
Q ss_pred cEEEEEEcCCCCChhHHHHHHhc
Q 047336 182 LSVVAILDSIGLDKTAFTAEAYN 204 (290)
Q Consensus 182 ~~Vi~IvGmgGiGKTTLa~~vy~ 204 (290)
-.+|.|.|+.|+||||+++.+-+
T Consensus 4 ~~~I~l~G~~GsGKsT~~~~L~~ 26 (204)
T 2v54_A 4 GALIVFEGLDKSGKTTQCMNIME 26 (204)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHH
Confidence 35799999999999999999987
No 180
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.61 E-value=0.0082 Score=56.02 Aligned_cols=46 Identities=20% Similarity=0.234 Sum_probs=36.2
Q ss_pred CcccccchhHHHHHHHHhc-----------CCCCcEEEEEEcCCCCChhHHHHHHhc
Q 047336 159 RNTVGLDDRMEELLDLLIE-----------GPTQLSVVAILDSIGLDKTAFTAEAYN 204 (290)
Q Consensus 159 ~~~vG~e~~~~~L~~~L~~-----------~~~~~~Vi~IvGmgGiGKTTLa~~vy~ 204 (290)
.++.|.++.+++|.+.+.- +-...+=|-++|++|+|||+||+.+-+
T Consensus 209 ~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLAkAiA~ 265 (467)
T 4b4t_H 209 SDVGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAVAN 265 (467)
T ss_dssp SSCTTCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHHHhcCHHHHHHCCCCCCCceEeeCCCCCcHHHHHHHHHh
Confidence 4688999999998876431 223456677999999999999999988
No 181
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=95.60 E-value=0.0074 Score=50.72 Aligned_cols=26 Identities=15% Similarity=0.183 Sum_probs=23.3
Q ss_pred CCcEEEEEEcCCCCChhHHHHHHhcc
Q 047336 180 TQLSVVAILDSIGLDKTAFTAEAYNS 205 (290)
Q Consensus 180 ~~~~Vi~IvGmgGiGKTTLa~~vy~d 205 (290)
.+.+||-|.|++|+||||.|+.+.+.
T Consensus 27 ~k~kiI~llGpPGsGKgTqa~~L~~~ 52 (217)
T 3umf_A 27 AKAKVIFVLGGPGSGKGTQCEKLVQK 52 (217)
T ss_dssp TSCEEEEEECCTTCCHHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 56889999999999999999998873
No 182
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=95.60 E-value=0.0072 Score=53.40 Aligned_cols=24 Identities=21% Similarity=0.171 Sum_probs=21.6
Q ss_pred CcEEEEEEcCCCCChhHHHHHHhc
Q 047336 181 QLSVVAILDSIGLDKTAFTAEAYN 204 (290)
Q Consensus 181 ~~~Vi~IvGmgGiGKTTLa~~vy~ 204 (290)
.-.+++|+|+.|+|||||++.+..
T Consensus 99 ~g~vi~lvG~nGsGKTTll~~Lag 122 (302)
T 3b9q_A 99 KPAVIMIVGVNGGGKTTSLGKLAH 122 (302)
T ss_dssp SCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHH
Confidence 357999999999999999998876
No 183
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=95.59 E-value=0.0032 Score=50.90 Aligned_cols=23 Identities=13% Similarity=0.182 Sum_probs=20.3
Q ss_pred cEEEEEEcCCCCChhHHHHHHhc
Q 047336 182 LSVVAILDSIGLDKTAFTAEAYN 204 (290)
Q Consensus 182 ~~Vi~IvGmgGiGKTTLa~~vy~ 204 (290)
..+++|+|..|+|||||++.+..
T Consensus 2 ~~~v~IvG~SGsGKSTL~~~L~~ 24 (171)
T 2f1r_A 2 SLILSIVGTSDSGKTTLITRMMP 24 (171)
T ss_dssp -CEEEEEESCHHHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 35899999999999999999876
No 184
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=95.57 E-value=0.004 Score=52.35 Aligned_cols=22 Identities=14% Similarity=0.173 Sum_probs=16.3
Q ss_pred cEEEEEEcCCCCChhHHHHHHh
Q 047336 182 LSVVAILDSIGLDKTAFTAEAY 203 (290)
Q Consensus 182 ~~Vi~IvGmgGiGKTTLa~~vy 203 (290)
-.+++|+|+.|+|||||++.+.
T Consensus 27 G~ii~l~Gp~GsGKSTl~~~L~ 48 (231)
T 3lnc_A 27 GVILVLSSPSGCGKTTVANKLL 48 (231)
T ss_dssp CCEEEEECSCC----CHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHH
Confidence 3589999999999999999988
No 185
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=95.55 E-value=0.0075 Score=53.30 Aligned_cols=25 Identities=12% Similarity=0.130 Sum_probs=22.3
Q ss_pred CCcEEEEEEcCCCCChhHHHHHHhc
Q 047336 180 TQLSVVAILDSIGLDKTAFTAEAYN 204 (290)
Q Consensus 180 ~~~~Vi~IvGmgGiGKTTLa~~vy~ 204 (290)
....+|+|+|..|+|||||++.+..
T Consensus 78 ~~g~iigI~G~~GsGKSTl~~~L~~ 102 (308)
T 1sq5_A 78 RIPYIISIAGSVAVGKSTTARVLQA 102 (308)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 3467999999999999999998876
No 186
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=95.54 E-value=0.0081 Score=49.72 Aligned_cols=24 Identities=8% Similarity=-0.003 Sum_probs=21.5
Q ss_pred CcEEEEEEcCCCCChhHHHHHHhc
Q 047336 181 QLSVVAILDSIGLDKTAFTAEAYN 204 (290)
Q Consensus 181 ~~~Vi~IvGmgGiGKTTLa~~vy~ 204 (290)
.-.+|.|.|+.|+||||+++.+..
T Consensus 24 ~~~~i~~~G~~GsGKsT~~~~l~~ 47 (211)
T 1m7g_A 24 RGLTIWLTGLSASGKSTLAVELEH 47 (211)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHH
Confidence 357899999999999999999876
No 187
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=95.54 E-value=0.0069 Score=50.13 Aligned_cols=21 Identities=10% Similarity=0.150 Sum_probs=18.9
Q ss_pred EEEEEcCCCCChhHHHHHHhc
Q 047336 184 VVAILDSIGLDKTAFTAEAYN 204 (290)
Q Consensus 184 Vi~IvGmgGiGKTTLa~~vy~ 204 (290)
.|.|.|+.|+||||+|+.+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIE 22 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999999865
No 188
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=95.53 E-value=0.01 Score=55.30 Aligned_cols=46 Identities=13% Similarity=0.185 Sum_probs=35.9
Q ss_pred CcccccchhHHHHHHHHhcC------------CCCcEEEEEEcCCCCChhHHHHHHhc
Q 047336 159 RNTVGLDDRMEELLDLLIEG------------PTQLSVVAILDSIGLDKTAFTAEAYN 204 (290)
Q Consensus 159 ~~~vG~e~~~~~L~~~L~~~------------~~~~~Vi~IvGmgGiGKTTLa~~vy~ 204 (290)
..++|.++.++.|...+... +....-|-++|++|+||||+|+.+-.
T Consensus 15 ~~IvGqe~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~iLl~GppGtGKT~lar~lA~ 72 (444)
T 1g41_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAK 72 (444)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHHHHSCTTTTTTCCCCCEEEECCTTSSHHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHHHHHhhhccccccccccCCceEEEEcCCCCCHHHHHHHHHH
Confidence 46899999999987776321 11245578999999999999999887
No 189
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=95.53 E-value=0.0069 Score=51.51 Aligned_cols=23 Identities=17% Similarity=0.348 Sum_probs=21.2
Q ss_pred cEEEEEEcCCCCChhHHHHHHhc
Q 047336 182 LSVVAILDSIGLDKTAFTAEAYN 204 (290)
Q Consensus 182 ~~Vi~IvGmgGiGKTTLa~~vy~ 204 (290)
-.+++|+|..|.|||||.+.+..
T Consensus 31 Ge~~~i~G~nGsGKSTLl~~l~G 53 (237)
T 2cbz_A 31 GALVAVVGQVGCGKSSLLSALLA 53 (237)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 45899999999999999999987
No 190
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=95.53 E-value=0.013 Score=55.26 Aligned_cols=24 Identities=17% Similarity=0.158 Sum_probs=21.8
Q ss_pred CcEEEEEEcCCCCChhHHHHHHhc
Q 047336 181 QLSVVAILDSIGLDKTAFTAEAYN 204 (290)
Q Consensus 181 ~~~Vi~IvGmgGiGKTTLa~~vy~ 204 (290)
.-.+|+|+|..|+|||||++.+..
T Consensus 292 ~GeVI~LVGpNGSGKTTLl~~LAg 315 (503)
T 2yhs_A 292 APFVILMVGVNGVGKTTTIGKLAR 315 (503)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCcccHHHHHHHHHH
Confidence 467999999999999999999876
No 191
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=95.49 E-value=0.0071 Score=52.25 Aligned_cols=23 Identities=26% Similarity=0.258 Sum_probs=21.0
Q ss_pred cEEEEEEcCCCCChhHHHHHHhc
Q 047336 182 LSVVAILDSIGLDKTAFTAEAYN 204 (290)
Q Consensus 182 ~~Vi~IvGmgGiGKTTLa~~vy~ 204 (290)
-.+++|+|+.|.|||||.+.+..
T Consensus 32 Ge~~~liG~nGsGKSTLlk~l~G 54 (262)
T 1b0u_A 32 GDVISIIGSSGSGKSTFLRCINF 54 (262)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 46899999999999999999976
No 192
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=95.49 E-value=0.007 Score=53.31 Aligned_cols=24 Identities=21% Similarity=0.224 Sum_probs=21.1
Q ss_pred CcEEEEEEcCCCCChhHHHHHHhc
Q 047336 181 QLSVVAILDSIGLDKTAFTAEAYN 204 (290)
Q Consensus 181 ~~~Vi~IvGmgGiGKTTLa~~vy~ 204 (290)
...+|+++|.+|+||||++..+..
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~LA~ 127 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAKLAA 127 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 457999999999999999988765
No 193
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=95.49 E-value=0.0073 Score=51.43 Aligned_cols=23 Identities=17% Similarity=0.200 Sum_probs=21.0
Q ss_pred cEEEEEEcCCCCChhHHHHHHhc
Q 047336 182 LSVVAILDSIGLDKTAFTAEAYN 204 (290)
Q Consensus 182 ~~Vi~IvGmgGiGKTTLa~~vy~ 204 (290)
=.+++|+|+.|.|||||.+.+..
T Consensus 32 Ge~~~l~G~nGsGKSTLl~~l~G 54 (240)
T 1ji0_A 32 GQIVTLIGANGAGKTTTLSAIAG 54 (240)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 35899999999999999999976
No 194
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=95.47 E-value=0.0075 Score=49.33 Aligned_cols=21 Identities=14% Similarity=0.132 Sum_probs=19.7
Q ss_pred EEEEEcCCCCChhHHHHHHhc
Q 047336 184 VVAILDSIGLDKTAFTAEAYN 204 (290)
Q Consensus 184 Vi~IvGmgGiGKTTLa~~vy~ 204 (290)
+|+|.|+.|+||||+++.+-.
T Consensus 4 ~i~i~G~~GsGKst~~~~la~ 24 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAA 24 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 899999999999999999866
No 195
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=95.46 E-value=0.014 Score=55.09 Aligned_cols=48 Identities=17% Similarity=0.220 Sum_probs=35.2
Q ss_pred CCcccccchhHHHHHHHHhc--C-----C---CCcEEEEEEcCCCCChhHHHHHHhcc
Q 047336 158 NRNTVGLDDRMEELLDLLIE--G-----P---TQLSVVAILDSIGLDKTAFTAEAYNS 205 (290)
Q Consensus 158 ~~~~vG~e~~~~~L~~~L~~--~-----~---~~~~Vi~IvGmgGiGKTTLa~~vy~d 205 (290)
-.+++|.++.+.++.+.... + + .-.+=+.|+|++|+||||||+.+.+.
T Consensus 30 f~dv~G~~~~k~~l~~lv~~l~~~~~~~~lg~~ip~GvLL~GppGtGKTtLaraIa~~ 87 (499)
T 2dhr_A 30 FKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGE 87 (499)
T ss_dssp TTSSCSCHHHHHHHHHHHHHHHCGGGTTTTSCCCCSEEEEECSSSSSHHHHHHHHHHH
T ss_pred HHHcCCcHHHHHHHHHHHHHhhchhhhhhccCCCCceEEEECCCCCCHHHHHHHHHHH
Confidence 35699999888887776532 1 0 01123889999999999999999873
No 196
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=95.45 E-value=0.01 Score=52.43 Aligned_cols=52 Identities=12% Similarity=0.144 Sum_probs=32.7
Q ss_pred hHHHHHHHHhcCCC-CcEEEEEEcCCCCChhHHHHHHhcccccc-ccCCeeEEEEC
Q 047336 167 RMEELLDLLIEGPT-QLSVVAILDSIGLDKTAFTAEAYNSSYVK-HYFDYLAWIPA 220 (290)
Q Consensus 167 ~~~~L~~~L~~~~~-~~~Vi~IvGmgGiGKTTLa~~vy~d~~v~-~~F~~~~wV~v 220 (290)
..+.+.+++..... ....+-++|..|+|||+||+.+.+ ... ..-....++++
T Consensus 136 ~~~~~~~~i~~~~~~~~~~lll~G~~GtGKT~La~aia~--~~~~~~g~~v~~~~~ 189 (308)
T 2qgz_A 136 AFSAILDFVEQYPSAEQKGLYLYGDMGIGKSYLLAAMAH--ELSEKKGVSTTLLHF 189 (308)
T ss_dssp HHHHHHHHHHHCSCSSCCEEEEECSTTSSHHHHHHHHHH--HHHHHSCCCEEEEEH
T ss_pred HHHHHHHHHHhccccCCceEEEECCCCCCHHHHHHHHHH--HHHHhcCCcEEEEEH
Confidence 34445556654221 245677999999999999999998 333 22223455553
No 197
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=95.45 E-value=0.014 Score=54.28 Aligned_cols=38 Identities=21% Similarity=0.128 Sum_probs=28.0
Q ss_pred hHHHHHHHHhcC-------CCCcEEEEEEcCCCCChhHHHHHHhc
Q 047336 167 RMEELLDLLIEG-------PTQLSVVAILDSIGLDKTAFTAEAYN 204 (290)
Q Consensus 167 ~~~~L~~~L~~~-------~~~~~Vi~IvGmgGiGKTTLa~~vy~ 204 (290)
-.++|.++|... .....+|.++|.+|+||||++-.+-.
T Consensus 78 ~~~~l~~~l~~~~~~~~~~~~~~~vI~ivG~~GvGKTT~a~~LA~ 122 (433)
T 2xxa_A 78 VRNELVAAMGEENQTLNLAAQPPAVVLMAGLQGAGKTTSVGKLGK 122 (433)
T ss_dssp HHHHHHHHHCSSSCCCCCCSSSSEEEEEECSTTSSHHHHHHHHHH
T ss_pred HHHHHHHHhccccccccccCCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 455666666532 13478999999999999999877764
No 198
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=95.45 E-value=0.0077 Score=49.87 Aligned_cols=21 Identities=10% Similarity=0.075 Sum_probs=18.9
Q ss_pred EEEEEcCCCCChhHHHHHHhc
Q 047336 184 VVAILDSIGLDKTAFTAEAYN 204 (290)
Q Consensus 184 Vi~IvGmgGiGKTTLa~~vy~ 204 (290)
.|.|.|+.|+||||+|+.+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVE 22 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999999865
No 199
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=95.44 E-value=0.0075 Score=52.56 Aligned_cols=23 Identities=26% Similarity=0.267 Sum_probs=20.8
Q ss_pred cEEEEEEcCCCCChhHHHHHHhc
Q 047336 182 LSVVAILDSIGLDKTAFTAEAYN 204 (290)
Q Consensus 182 ~~Vi~IvGmgGiGKTTLa~~vy~ 204 (290)
=.+++|+|+.|.|||||++.+..
T Consensus 34 Ge~~~iiGpnGsGKSTLl~~l~G 56 (275)
T 3gfo_A 34 GEVTAILGGNGVGKSTLFQNFNG 56 (275)
T ss_dssp TSEEEEECCTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHHc
Confidence 45899999999999999999975
No 200
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=95.44 E-value=0.012 Score=52.43 Aligned_cols=53 Identities=9% Similarity=-0.024 Sum_probs=35.5
Q ss_pred cEEEEEEcCCCCChhHHHHHHhccccccccCCeeEEEEC--CCC-----CCHHHHHHHHHHHhhh
Q 047336 182 LSVVAILDSIGLDKTAFTAEAYNSSYVKHYFDYLAWIPA--PYQ-----YDPDQILDTVTWLSRR 239 (290)
Q Consensus 182 ~~Vi~IvGmgGiGKTTLa~~vy~d~~v~~~F~~~~wV~v--s~~-----~~~~~ll~~Il~~l~~ 239 (290)
-+++-|+|++|+||||||..+... .-..++|+++ +.. .+...++..+.+.+..
T Consensus 123 gsviLI~GpPGsGKTtLAlqlA~~-----~G~~VlyIs~~~eE~v~~~~~~le~~l~~i~~~l~~ 182 (331)
T 2vhj_A 123 SGMVIVTGKGNSGKTPLVHALGEA-----LGGKDKYATVRFGEPLSGYNTDFNVFVDDIARAMLQ 182 (331)
T ss_dssp SEEEEEECSCSSSHHHHHHHHHHH-----HHTTSCCEEEEBSCSSTTCBCCHHHHHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHh-----CCCCEEEEEecchhhhhhhhcCHHHHHHHHHHHHhh
Confidence 456789999999999999998763 1123455555 111 4567777766666543
No 201
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=95.43 E-value=0.0077 Score=51.83 Aligned_cols=23 Identities=17% Similarity=0.141 Sum_probs=20.9
Q ss_pred cEEEEEEcCCCCChhHHHHHHhc
Q 047336 182 LSVVAILDSIGLDKTAFTAEAYN 204 (290)
Q Consensus 182 ~~Vi~IvGmgGiGKTTLa~~vy~ 204 (290)
=.+++|+|+.|.|||||.+.+..
T Consensus 33 Ge~~~liG~nGsGKSTLlk~l~G 55 (257)
T 1g6h_A 33 GDVTLIIGPNGSGKSTLINVITG 55 (257)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 35899999999999999999976
No 202
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=95.43 E-value=0.0084 Score=51.13 Aligned_cols=24 Identities=17% Similarity=0.102 Sum_probs=21.5
Q ss_pred CcEEEEEEcCCCCChhHHHHHHhc
Q 047336 181 QLSVVAILDSIGLDKTAFTAEAYN 204 (290)
Q Consensus 181 ~~~Vi~IvGmgGiGKTTLa~~vy~ 204 (290)
.=.+++|+|..|.|||||.+.+..
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~l~G 50 (243)
T 1mv5_A 27 PNSIIAFAGPSGGGKSTIFSLLER 50 (243)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhc
Confidence 346899999999999999999976
No 203
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=95.43 E-value=0.041 Score=49.30 Aligned_cols=54 Identities=13% Similarity=0.233 Sum_probs=38.9
Q ss_pred CCCCcEEEEEEcCCCCChhHHHHHHhccccccc----cCCeeEEEECCCCCCHHHHHH
Q 047336 178 GPTQLSVVAILDSIGLDKTAFTAEAYNSSYVKH----YFDYLAWIPAPYQYDPDQILD 231 (290)
Q Consensus 178 ~~~~~~Vi~IvGmgGiGKTTLa~~vy~d~~v~~----~F~~~~wV~vs~~~~~~~ll~ 231 (290)
+=+.-.++-|+|.+|+||||||..+..+..... .=..++|++....|+...+.+
T Consensus 118 Gl~~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~~~~~~~l~~ 175 (343)
T 1v5w_A 118 GIESMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTENTFRPDRLRD 175 (343)
T ss_dssp SBCSSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSSCCCHHHHHH
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHH
Confidence 334567999999999999999998776322211 124689999988888776543
No 204
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=95.43 E-value=0.0077 Score=48.79 Aligned_cols=23 Identities=17% Similarity=0.205 Sum_probs=21.4
Q ss_pred cEEEEEEcCCCCChhHHHHHHhc
Q 047336 182 LSVVAILDSIGLDKTAFTAEAYN 204 (290)
Q Consensus 182 ~~Vi~IvGmgGiGKTTLa~~vy~ 204 (290)
.++++|+|..|+|||||++.+..
T Consensus 6 ~~~i~i~G~sGsGKTTl~~~l~~ 28 (174)
T 1np6_A 6 IPLLAFAAWSGTGKTTLLKKLIP 28 (174)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEEeCCCCCHHHHHHHHHH
Confidence 67999999999999999999887
No 205
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=95.43 E-value=0.013 Score=55.96 Aligned_cols=46 Identities=17% Similarity=0.292 Sum_probs=36.5
Q ss_pred CcccccchhHHHHHHHHhc----CCCCcEEEEEEcCCCCChhHHHHHHhc
Q 047336 159 RNTVGLDDRMEELLDLLIE----GPTQLSVVAILDSIGLDKTAFTAEAYN 204 (290)
Q Consensus 159 ~~~vG~e~~~~~L~~~L~~----~~~~~~Vi~IvGmgGiGKTTLa~~vy~ 204 (290)
.+++|.++-++.+.+.+.- ......++.++|++|+||||||+.+..
T Consensus 81 ~di~G~~~vk~~i~~~~~l~~~~~~~~g~~vll~Gp~GtGKTtlar~ia~ 130 (543)
T 3m6a_A 81 EEHHGLEKVKERILEYLAVQKLTKSLKGPILCLAGPPGVGKTSLAKSIAK 130 (543)
T ss_dssp HHCSSCHHHHHHHHHHHHHHHHSSSCCSCEEEEESSSSSSHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHHHHhcccCCCCEEEEECCCCCCHHHHHHHHHH
Confidence 4589999888888765542 223466899999999999999999987
No 206
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=95.41 E-value=0.008 Score=51.50 Aligned_cols=23 Identities=17% Similarity=0.125 Sum_probs=21.1
Q ss_pred cEEEEEEcCCCCChhHHHHHHhc
Q 047336 182 LSVVAILDSIGLDKTAFTAEAYN 204 (290)
Q Consensus 182 ~~Vi~IvGmgGiGKTTLa~~vy~ 204 (290)
=.+++|+|..|.|||||.+.+..
T Consensus 29 Ge~~~l~G~nGsGKSTLlk~l~G 51 (250)
T 2d2e_A 29 GEVHALMGPNGAGKSTLGKILAG 51 (250)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 35899999999999999999987
No 207
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=95.41 E-value=0.0081 Score=50.79 Aligned_cols=23 Identities=22% Similarity=0.221 Sum_probs=21.1
Q ss_pred cEEEEEEcCCCCChhHHHHHHhc
Q 047336 182 LSVVAILDSIGLDKTAFTAEAYN 204 (290)
Q Consensus 182 ~~Vi~IvGmgGiGKTTLa~~vy~ 204 (290)
=.+++|+|+.|.|||||.+.+..
T Consensus 34 Ge~~~i~G~nGsGKSTLl~~l~G 56 (229)
T 2pze_A 34 GQLLAVAGSTGAGKTSLLMMIMG 56 (229)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 45899999999999999999987
No 208
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=95.40 E-value=0.024 Score=49.41 Aligned_cols=53 Identities=9% Similarity=0.075 Sum_probs=34.2
Q ss_pred CcEEEEEEcCCCCChhHHHHHHhccccccccCC-eeEEEECCCCCCHHHHHHHHHHHh
Q 047336 181 QLSVVAILDSIGLDKTAFTAEAYNSSYVKHYFD-YLAWIPAPYQYDPDQILDTVTWLS 237 (290)
Q Consensus 181 ~~~Vi~IvGmgGiGKTTLa~~vy~d~~v~~~F~-~~~wV~vs~~~~~~~ll~~Il~~l 237 (290)
.-.+++|+|.+|+|||||++.+... +...-. .++|++... +...+.+.++...
T Consensus 34 ~G~~~~i~G~~G~GKTTl~~~ia~~--~~~~~G~~v~~~~~e~--~~~~~~~r~~~~~ 87 (296)
T 1cr0_A 34 GGEVIMVTSGSGMGKSTFVRQQALQ--WGTAMGKKVGLAMLEE--SVEETAEDLIGLH 87 (296)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHHHH--HHHTSCCCEEEEESSS--CHHHHHHHHHHHH
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHH--HHHHcCCeEEEEeCcC--CHHHHHHHHHHHH
Confidence 3468999999999999999988763 222223 455666543 4455555555443
No 209
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=95.38 E-value=0.007 Score=50.46 Aligned_cols=23 Identities=13% Similarity=-0.142 Sum_probs=20.5
Q ss_pred cEEEEEEcCCCCChhHHHHHHhc
Q 047336 182 LSVVAILDSIGLDKTAFTAEAYN 204 (290)
Q Consensus 182 ~~Vi~IvGmgGiGKTTLa~~vy~ 204 (290)
...|.|.|+.|+||||+++.+.+
T Consensus 5 ~~~I~l~G~~GsGKsT~~~~La~ 27 (222)
T 1zak_A 5 PLKVMISGAPASGKGTQCELIKT 27 (222)
T ss_dssp SCCEEEEESTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 45788999999999999999876
No 210
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=95.37 E-value=0.0083 Score=51.93 Aligned_cols=24 Identities=21% Similarity=0.216 Sum_probs=21.5
Q ss_pred CcEEEEEEcCCCCChhHHHHHHhc
Q 047336 181 QLSVVAILDSIGLDKTAFTAEAYN 204 (290)
Q Consensus 181 ~~~Vi~IvGmgGiGKTTLa~~vy~ 204 (290)
.-.+++|+|+.|.|||||.+.+..
T Consensus 49 ~Gei~~liG~NGsGKSTLlk~l~G 72 (263)
T 2olj_A 49 EGEVVVVIGPSGSGKSTFLRCLNL 72 (263)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTT
T ss_pred CCCEEEEEcCCCCcHHHHHHHHHc
Confidence 346899999999999999999976
No 211
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=95.37 E-value=0.0064 Score=52.26 Aligned_cols=23 Identities=13% Similarity=0.057 Sum_probs=20.5
Q ss_pred cEEEEEEcCCCCChhHHHHHHhc
Q 047336 182 LSVVAILDSIGLDKTAFTAEAYN 204 (290)
Q Consensus 182 ~~Vi~IvGmgGiGKTTLa~~vy~ 204 (290)
-.+|.|+|+.|+||||+++.+-.
T Consensus 48 g~~i~l~G~~GsGKSTl~~~La~ 70 (250)
T 3nwj_A 48 GRSMYLVGMMGSGKTTVGKIMAR 70 (250)
T ss_dssp TCCEEEECSTTSCHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999999865
No 212
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=95.35 E-value=0.0086 Score=51.27 Aligned_cols=23 Identities=22% Similarity=0.229 Sum_probs=20.9
Q ss_pred cEEEEEEcCCCCChhHHHHHHhc
Q 047336 182 LSVVAILDSIGLDKTAFTAEAYN 204 (290)
Q Consensus 182 ~~Vi~IvGmgGiGKTTLa~~vy~ 204 (290)
-.+++|+|..|.|||||.+.+..
T Consensus 35 Ge~~~i~G~nGsGKSTLl~~l~G 57 (247)
T 2ff7_A 35 GEVIGIVGRSGSGKSTLTKLIQR 57 (247)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 35899999999999999999976
No 213
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=95.35 E-value=0.0098 Score=50.62 Aligned_cols=25 Identities=24% Similarity=0.260 Sum_probs=21.6
Q ss_pred CCcEEEEEEcCCCCChhHHHHHHhc
Q 047336 180 TQLSVVAILDSIGLDKTAFTAEAYN 204 (290)
Q Consensus 180 ~~~~Vi~IvGmgGiGKTTLa~~vy~ 204 (290)
....++.+.|.||+|||||+..+..
T Consensus 12 ~~~~i~~~~GkgGvGKTTl~~~La~ 36 (262)
T 1yrb_A 12 MASMIVVFVGTAGSGKTTLTGEFGR 36 (262)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHH
T ss_pred cceEEEEEeCCCCCCHHHHHHHHHH
Confidence 3578889999999999999998864
No 214
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=95.33 E-value=0.0072 Score=50.64 Aligned_cols=23 Identities=22% Similarity=0.199 Sum_probs=20.7
Q ss_pred cEEEEEEcCCCCChhHHHHHHhc
Q 047336 182 LSVVAILDSIGLDKTAFTAEAYN 204 (290)
Q Consensus 182 ~~Vi~IvGmgGiGKTTLa~~vy~ 204 (290)
=.+++|+|+.|.|||||.+.+..
T Consensus 35 Ge~~~iiG~NGsGKSTLlk~l~G 57 (214)
T 1sgw_A 35 GNVVNFHGPNGIGKTTLLKTIST 57 (214)
T ss_dssp TCCEEEECCTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 35789999999999999999976
No 215
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=95.33 E-value=0.01 Score=52.54 Aligned_cols=24 Identities=17% Similarity=0.130 Sum_probs=21.5
Q ss_pred CcEEEEEEcCCCCChhHHHHHHhc
Q 047336 181 QLSVVAILDSIGLDKTAFTAEAYN 204 (290)
Q Consensus 181 ~~~Vi~IvGmgGiGKTTLa~~vy~ 204 (290)
...+|+|+|.+|+||||++..+..
T Consensus 103 ~~~vi~ivG~~GsGKTTl~~~LA~ 126 (306)
T 1vma_A 103 PPFVIMVVGVNGTGKTTSCGKLAK 126 (306)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEEcCCCChHHHHHHHHHH
Confidence 468999999999999999988876
No 216
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=95.32 E-value=0.029 Score=49.84 Aligned_cols=51 Identities=10% Similarity=0.087 Sum_probs=36.9
Q ss_pred CcEEEEEEcCCCCChhHHHHHHhcccccccc----CCeeEEEECCCCCCHHHHHH
Q 047336 181 QLSVVAILDSIGLDKTAFTAEAYNSSYVKHY----FDYLAWIPAPYQYDPDQILD 231 (290)
Q Consensus 181 ~~~Vi~IvGmgGiGKTTLa~~vy~d~~v~~~----F~~~~wV~vs~~~~~~~ll~ 231 (290)
.-.++-|+|.+|+||||||..+..+...... =..++|++....|+...+.+
T Consensus 106 ~G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~~~~~~~l~~ 160 (324)
T 2z43_A 106 TRTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEGTFRWERIEN 160 (324)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHHHHH
T ss_pred CCcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHH
Confidence 3568999999999999999887763221111 23689999988887776553
No 217
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=95.31 E-value=0.0086 Score=51.87 Aligned_cols=23 Identities=22% Similarity=0.192 Sum_probs=21.0
Q ss_pred cEEEEEEcCCCCChhHHHHHHhc
Q 047336 182 LSVVAILDSIGLDKTAFTAEAYN 204 (290)
Q Consensus 182 ~~Vi~IvGmgGiGKTTLa~~vy~ 204 (290)
=.+++|+|+.|.|||||++.+..
T Consensus 37 Ge~~~liG~nGsGKSTLl~~l~G 59 (266)
T 4g1u_C 37 GEMVAIIGPNGAGKSTLLRLLTG 59 (266)
T ss_dssp TCEEEEECCTTSCHHHHHHHHTS
T ss_pred CCEEEEECCCCCcHHHHHHHHhc
Confidence 46899999999999999999976
No 218
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=95.31 E-value=0.0089 Score=51.50 Aligned_cols=23 Identities=13% Similarity=0.083 Sum_probs=21.1
Q ss_pred cEEEEEEcCCCCChhHHHHHHhc
Q 047336 182 LSVVAILDSIGLDKTAFTAEAYN 204 (290)
Q Consensus 182 ~~Vi~IvGmgGiGKTTLa~~vy~ 204 (290)
=.+++|+|+.|.|||||.+.+..
T Consensus 41 Gei~~l~G~NGsGKSTLlk~l~G 63 (256)
T 1vpl_A 41 GEIFGLIGPNGAGKTTTLRIIST 63 (256)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTT
T ss_pred CcEEEEECCCCCCHHHHHHHHhc
Confidence 46899999999999999999976
No 219
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=95.31 E-value=0.0089 Score=51.78 Aligned_cols=23 Identities=26% Similarity=0.245 Sum_probs=21.2
Q ss_pred cEEEEEEcCCCCChhHHHHHHhc
Q 047336 182 LSVVAILDSIGLDKTAFTAEAYN 204 (290)
Q Consensus 182 ~~Vi~IvGmgGiGKTTLa~~vy~ 204 (290)
=.+++|+|..|.|||||.+.+..
T Consensus 46 Ge~~~l~G~NGsGKSTLlk~l~G 68 (267)
T 2zu0_C 46 GEVHAIMGPNGSGKSTLSATLAG 68 (267)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 46899999999999999999987
No 220
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=95.31 E-value=0.0089 Score=51.92 Aligned_cols=23 Identities=26% Similarity=0.218 Sum_probs=21.1
Q ss_pred cEEEEEEcCCCCChhHHHHHHhc
Q 047336 182 LSVVAILDSIGLDKTAFTAEAYN 204 (290)
Q Consensus 182 ~~Vi~IvGmgGiGKTTLa~~vy~ 204 (290)
-.+++|+|..|.|||||.+.+..
T Consensus 45 Ge~~~i~G~nGsGKSTLlk~l~G 67 (271)
T 2ixe_A 45 GKVTALVGPNGSGKSTVAALLQN 67 (271)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 46899999999999999999976
No 221
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=95.31 E-value=0.018 Score=48.58 Aligned_cols=25 Identities=20% Similarity=0.274 Sum_probs=22.3
Q ss_pred CcEEEEEEcCCCCChhHHHHHHhcc
Q 047336 181 QLSVVAILDSIGLDKTAFTAEAYNS 205 (290)
Q Consensus 181 ~~~Vi~IvGmgGiGKTTLa~~vy~d 205 (290)
.-..|.|.|+.|+||||+++.+.+.
T Consensus 25 ~g~~i~i~G~~GsGKsT~~~~l~~~ 49 (229)
T 4eaq_A 25 MSAFITFEGPEGSGKTTVINEVYHR 49 (229)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHH
Confidence 4578999999999999999999884
No 222
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=95.30 E-value=0.033 Score=50.08 Aligned_cols=49 Identities=12% Similarity=0.250 Sum_probs=33.8
Q ss_pred CCcEEEEEEcCCCCChhHHHHHHhccccccccC----CeeEEEECCCCCCHHH
Q 047336 180 TQLSVVAILDSIGLDKTAFTAEAYNSSYVKHYF----DYLAWIPAPYQYDPDQ 228 (290)
Q Consensus 180 ~~~~Vi~IvGmgGiGKTTLa~~vy~d~~v~~~F----~~~~wV~vs~~~~~~~ 228 (290)
+.-.++.|+|..|+|||||++.+.......... ..++||+-...+....
T Consensus 129 ~~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~~~~~~ 181 (349)
T 1pzn_A 129 ETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRPER 181 (349)
T ss_dssp ESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSCCCHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCCCCHHH
Confidence 456899999999999999999887632111111 2458888766654443
No 223
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=95.30 E-value=0.009 Score=51.53 Aligned_cols=23 Identities=17% Similarity=0.271 Sum_probs=21.0
Q ss_pred cEEEEEEcCCCCChhHHHHHHhc
Q 047336 182 LSVVAILDSIGLDKTAFTAEAYN 204 (290)
Q Consensus 182 ~~Vi~IvGmgGiGKTTLa~~vy~ 204 (290)
=.+++|+|..|.|||||.+.+..
T Consensus 46 Ge~~~i~G~nGsGKSTLl~~l~G 68 (260)
T 2ghi_A 46 GTTCALVGHTGSGKSTIAKLLYR 68 (260)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 45899999999999999999976
No 224
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=95.29 E-value=0.017 Score=50.82 Aligned_cols=23 Identities=17% Similarity=0.153 Sum_probs=20.7
Q ss_pred cEEEEEEcCCCCChhHHHHHHhc
Q 047336 182 LSVVAILDSIGLDKTAFTAEAYN 204 (290)
Q Consensus 182 ~~Vi~IvGmgGiGKTTLa~~vy~ 204 (290)
..+|+++|.+|+||||++..+..
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~ 120 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAY 120 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 67999999999999999988765
No 225
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=95.29 E-value=0.011 Score=45.71 Aligned_cols=23 Identities=13% Similarity=0.182 Sum_probs=20.2
Q ss_pred EEEEEEcCCCCChhHHHHHHhcc
Q 047336 183 SVVAILDSIGLDKTAFTAEAYNS 205 (290)
Q Consensus 183 ~Vi~IvGmgGiGKTTLa~~vy~d 205 (290)
+.|.|+|.+|+|||||+..+.+.
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~ 24 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKK 24 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 56899999999999999988764
No 226
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=95.27 E-value=0.011 Score=53.66 Aligned_cols=24 Identities=21% Similarity=0.171 Sum_probs=21.7
Q ss_pred CcEEEEEEcCCCCChhHHHHHHhc
Q 047336 181 QLSVVAILDSIGLDKTAFTAEAYN 204 (290)
Q Consensus 181 ~~~Vi~IvGmgGiGKTTLa~~vy~ 204 (290)
...+++|+|..|+|||||++.+..
T Consensus 156 ~g~vi~lvG~nGsGKTTll~~Lag 179 (359)
T 2og2_A 156 KPAVIMIVGVNGGGKTTSLGKLAH 179 (359)
T ss_dssp SSEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCeEEEEEcCCCChHHHHHHHHHh
Confidence 457999999999999999998876
No 227
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=95.26 E-value=0.015 Score=46.63 Aligned_cols=26 Identities=15% Similarity=0.068 Sum_probs=22.6
Q ss_pred CCcEEEEEEcCCCCChhHHHHHHhcc
Q 047336 180 TQLSVVAILDSIGLDKTAFTAEAYNS 205 (290)
Q Consensus 180 ~~~~Vi~IvGmgGiGKTTLa~~vy~d 205 (290)
.....|.|+|.+|+|||||.+.+.+.
T Consensus 14 ~~~~ki~ivG~~~vGKSsL~~~l~~~ 39 (181)
T 1fzq_A 14 DQEVRILLLGLDNAGKTTLLKQLASE 39 (181)
T ss_dssp SSCEEEEEEESTTSSHHHHHHHHCCS
T ss_pred CCceEEEEECCCCCCHHHHHHHHhcC
Confidence 45677899999999999999998864
No 228
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=95.25 E-value=0.0093 Score=48.41 Aligned_cols=24 Identities=17% Similarity=0.272 Sum_probs=21.2
Q ss_pred cEEEEEEcCCCCChhHHHHHHhcc
Q 047336 182 LSVVAILDSIGLDKTAFTAEAYNS 205 (290)
Q Consensus 182 ~~Vi~IvGmgGiGKTTLa~~vy~d 205 (290)
...|+|+|..|+|||||.+.+...
T Consensus 29 ~~kv~lvG~~g~GKSTLl~~l~~~ 52 (191)
T 1oix_A 29 LFKVVLIGDSGVGKSNLLSRFTRN 52 (191)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHhcC
Confidence 568899999999999999988763
No 229
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=95.24 E-value=0.0096 Score=51.51 Aligned_cols=23 Identities=9% Similarity=0.070 Sum_probs=21.0
Q ss_pred cEEEEEEcCCCCChhHHHHHHhc
Q 047336 182 LSVVAILDSIGLDKTAFTAEAYN 204 (290)
Q Consensus 182 ~~Vi~IvGmgGiGKTTLa~~vy~ 204 (290)
=.+++|+|..|.|||||.+.+..
T Consensus 33 Ge~~~liG~nGsGKSTLl~~i~G 55 (266)
T 2yz2_A 33 GECLLVAGNTGSGKSTLLQIVAG 55 (266)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCcHHHHHHHHhC
Confidence 45899999999999999999976
No 230
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=95.24 E-value=0.016 Score=53.85 Aligned_cols=24 Identities=13% Similarity=0.097 Sum_probs=21.3
Q ss_pred CcEEEEEEcCCCCChhHHHHHHhc
Q 047336 181 QLSVVAILDSIGLDKTAFTAEAYN 204 (290)
Q Consensus 181 ~~~Vi~IvGmgGiGKTTLa~~vy~ 204 (290)
...+|.++|.+|+||||++..+..
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~ 119 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAY 119 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999999887765
No 231
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=95.22 E-value=0.0084 Score=49.92 Aligned_cols=23 Identities=9% Similarity=-0.013 Sum_probs=20.3
Q ss_pred cEEEEEEcCCCCChhHHHHHHhc
Q 047336 182 LSVVAILDSIGLDKTAFTAEAYN 204 (290)
Q Consensus 182 ~~Vi~IvGmgGiGKTTLa~~vy~ 204 (290)
...|.|.|+.|+||||+|+.+-+
T Consensus 5 ~~~I~l~G~~GsGKsT~a~~La~ 27 (217)
T 3be4_A 5 KHNLILIGAPGSGKGTQCEFIKK 27 (217)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 35788999999999999999866
No 232
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=95.22 E-value=0.0099 Score=50.97 Aligned_cols=23 Identities=13% Similarity=0.205 Sum_probs=20.8
Q ss_pred cEEEEEEcCCCCChhHHHHHHhc
Q 047336 182 LSVVAILDSIGLDKTAFTAEAYN 204 (290)
Q Consensus 182 ~~Vi~IvGmgGiGKTTLa~~vy~ 204 (290)
-.+++|+|+.|.|||||.+.+..
T Consensus 26 Ge~~~liG~NGsGKSTLlk~l~G 48 (249)
T 2qi9_C 26 GEILHLVGPNGAGKSTLLARMAG 48 (249)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCcHHHHHHHHhC
Confidence 35899999999999999999876
No 233
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=95.21 E-value=0.01 Score=51.01 Aligned_cols=23 Identities=17% Similarity=0.223 Sum_probs=21.0
Q ss_pred cEEEEEEcCCCCChhHHHHHHhc
Q 047336 182 LSVVAILDSIGLDKTAFTAEAYN 204 (290)
Q Consensus 182 ~~Vi~IvGmgGiGKTTLa~~vy~ 204 (290)
-.+++|+|..|.|||||.+.+..
T Consensus 31 Ge~~~l~G~nGsGKSTLl~~l~G 53 (253)
T 2nq2_C 31 GDILAVLGQNGCGKSTLLDLLLG 53 (253)
T ss_dssp TCEEEEECCSSSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 35899999999999999999986
No 234
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=95.21 E-value=0.019 Score=57.02 Aligned_cols=46 Identities=13% Similarity=0.247 Sum_probs=37.3
Q ss_pred CcccccchhHHHHHHHHhcC-----C--CCcEEEEEEcCCCCChhHHHHHHhc
Q 047336 159 RNTVGLDDRMEELLDLLIEG-----P--TQLSVVAILDSIGLDKTAFTAEAYN 204 (290)
Q Consensus 159 ~~~vG~e~~~~~L~~~L~~~-----~--~~~~Vi~IvGmgGiGKTTLa~~vy~ 204 (290)
..++|.+..++.+.+.+... . .....+-++|++|+|||+||+.+.+
T Consensus 491 ~~viGq~~a~~~l~~~i~~~~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~ala~ 543 (758)
T 3pxi_A 491 SRVIGQDEAVVAVAKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTELARALAE 543 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHTTTCSCTTSCSEEEEEESCTTSSHHHHHHHHHH
T ss_pred CcCcChHHHHHHHHHHHHHHHcccCCCCCCceEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999888642 1 2234788999999999999999987
No 235
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=95.18 E-value=0.01 Score=51.81 Aligned_cols=23 Identities=13% Similarity=-0.061 Sum_probs=21.0
Q ss_pred cEEEEEEcCCCCChhHHHHHHhc
Q 047336 182 LSVVAILDSIGLDKTAFTAEAYN 204 (290)
Q Consensus 182 ~~Vi~IvGmgGiGKTTLa~~vy~ 204 (290)
=.+++|+|..|.|||||.+.+..
T Consensus 47 Ge~~~liG~NGsGKSTLlk~l~G 69 (279)
T 2ihy_A 47 GDKWILYGLNGAGKTTLLNILNA 69 (279)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCcHHHHHHHHhC
Confidence 45899999999999999999976
No 236
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=95.18 E-value=0.01 Score=50.39 Aligned_cols=23 Identities=22% Similarity=0.177 Sum_probs=20.8
Q ss_pred cEEEEEEcCCCCChhHHHHHHhc
Q 047336 182 LSVVAILDSIGLDKTAFTAEAYN 204 (290)
Q Consensus 182 ~~Vi~IvGmgGiGKTTLa~~vy~ 204 (290)
..+|+|.|+.|+||||+++.+-.
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~ 31 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLAR 31 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999875
No 237
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=95.17 E-value=0.029 Score=55.98 Aligned_cols=76 Identities=11% Similarity=0.102 Sum_probs=49.8
Q ss_pred CcccccchhHHHHHHHHhc---C--------CCCcEEEEEEcCCCCChhHHHHHHhccccccccCCeeEEEEC----CCC
Q 047336 159 RNTVGLDDRMEELLDLLIE---G--------PTQLSVVAILDSIGLDKTAFTAEAYNSSYVKHYFDYLAWIPA----PYQ 223 (290)
Q Consensus 159 ~~~vG~e~~~~~L~~~L~~---~--------~~~~~Vi~IvGmgGiGKTTLa~~vy~d~~v~~~F~~~~wV~v----s~~ 223 (290)
+++.|.++.+++|.+++.- . -...+-|-++|++|+|||+||+.|.+. ...+| +.|.. +..
T Consensus 204 ~dIgGl~~~~~~l~e~v~~pl~~p~~f~~~g~~~p~GILL~GPPGTGKT~LAraiA~e--lg~~~---~~v~~~~l~sk~ 278 (806)
T 3cf2_A 204 DDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANE--TGAFF---FLINGPEIMSKL 278 (806)
T ss_dssp GGCCSCCTTHHHHHHHHHHHHHCCGGGTSCCCCCCCEEEEECCTTSCHHHHHHHHHTT--TTCEE---EEEEHHHHHSSC
T ss_pred hhhcCHHHHHHHHHHHHHHHccCHHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHH--hCCeE---EEEEhHHhhccc
Confidence 4688999998888887531 1 123566789999999999999999983 33333 33332 333
Q ss_pred CC-HHHHHHHHHHHhhh
Q 047336 224 YD-PDQILDTVTWLSRR 239 (290)
Q Consensus 224 ~~-~~~ll~~Il~~l~~ 239 (290)
.. ....++.+++....
T Consensus 279 ~gese~~lr~lF~~A~~ 295 (806)
T 3cf2_A 279 AGESESNLRKAFEEAEK 295 (806)
T ss_dssp TTHHHHHHHHHHHHHTT
T ss_pred chHHHHHHHHHHHHHHH
Confidence 32 34556777666543
No 238
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.16 E-value=0.016 Score=53.54 Aligned_cols=46 Identities=20% Similarity=0.255 Sum_probs=35.9
Q ss_pred CcccccchhHHHHHHHHhc-----------CCCCcEEEEEEcCCCCChhHHHHHHhc
Q 047336 159 RNTVGLDDRMEELLDLLIE-----------GPTQLSVVAILDSIGLDKTAFTAEAYN 204 (290)
Q Consensus 159 ~~~vG~e~~~~~L~~~L~~-----------~~~~~~Vi~IvGmgGiGKTTLa~~vy~ 204 (290)
+++.|.++.+++|.+.+.- +-...+=|-++|++|+|||+||+.+-+
T Consensus 182 ~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi~~prGvLLyGPPGTGKTlLAkAiA~ 238 (437)
T 4b4t_I 182 SDIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVAN 238 (437)
T ss_dssp GGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTCCCCSEEEEESSTTTTHHHHHHHHHH
T ss_pred eecCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCCCceECCCCchHHHHHHHHHH
Confidence 4578899998888876532 123346677999999999999999988
No 239
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=95.15 E-value=0.013 Score=46.15 Aligned_cols=23 Identities=9% Similarity=0.137 Sum_probs=20.3
Q ss_pred EEEEEEcCCCCChhHHHHHHhcc
Q 047336 183 SVVAILDSIGLDKTAFTAEAYNS 205 (290)
Q Consensus 183 ~Vi~IvGmgGiGKTTLa~~vy~d 205 (290)
..|+|+|.+|+|||||.+.+.+.
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~~ 26 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTGE 26 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHCC
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 56899999999999999988763
No 240
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=95.15 E-value=0.0092 Score=50.21 Aligned_cols=25 Identities=32% Similarity=0.256 Sum_probs=22.4
Q ss_pred CCcEEEEEEcCCCCChhHHHHHHhc
Q 047336 180 TQLSVVAILDSIGLDKTAFTAEAYN 204 (290)
Q Consensus 180 ~~~~Vi~IvGmgGiGKTTLa~~vy~ 204 (290)
..-.+|+|.|..|+|||||++.+..
T Consensus 18 ~~g~~i~i~G~~GsGKSTl~~~L~~ 42 (230)
T 2vp4_A 18 TQPFTVLIEGNIGSGKTTYLNHFEK 42 (230)
T ss_dssp CCCEEEEEECSTTSCHHHHHHTTGG
T ss_pred CCceEEEEECCCCCCHHHHHHHHHh
Confidence 3457999999999999999999987
No 241
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=95.15 E-value=0.019 Score=52.37 Aligned_cols=35 Identities=14% Similarity=0.151 Sum_probs=26.4
Q ss_pred HHHHHHhcCCCCcEEEEEEcCCCCChhHHHHHHhc
Q 047336 170 ELLDLLIEGPTQLSVVAILDSIGLDKTAFTAEAYN 204 (290)
Q Consensus 170 ~L~~~L~~~~~~~~Vi~IvGmgGiGKTTLa~~vy~ 204 (290)
.+.+-+..+-..-.+++|+|+.|.|||||++.+..
T Consensus 157 ~~l~~~~~~i~~~~~i~l~G~~GsGKSTl~~~l~~ 191 (377)
T 1svm_A 157 DFLKCMVYNIPKKRYWLFKGPIDSGKTTLAAALLE 191 (377)
T ss_dssp HHHHHHHHCCTTCCEEEEECSTTSSHHHHHHHHHH
T ss_pred HHHHhcccccCCCCEEEEECCCCCCHHHHHHHHHh
Confidence 34444433434567999999999999999999986
No 242
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=95.15 E-value=0.014 Score=54.13 Aligned_cols=38 Identities=29% Similarity=0.308 Sum_probs=26.9
Q ss_pred hHHHHHHHHhcCC-------CCcEEEEEEcCCCCChhHHHHHHhc
Q 047336 167 RMEELLDLLIEGP-------TQLSVVAILDSIGLDKTAFTAEAYN 204 (290)
Q Consensus 167 ~~~~L~~~L~~~~-------~~~~Vi~IvGmgGiGKTTLa~~vy~ 204 (290)
..++|.+++.... ....+|+|+|.+|+||||++..+-.
T Consensus 77 ~~~~l~~ll~~~~~~~~~~~~~~~vI~ivG~~GvGKTTla~~La~ 121 (432)
T 2v3c_C 77 VYEELVKLLGEEAKKLELNPKKQNVILLVGIQGSGKTTTAAKLAR 121 (432)
T ss_dssp HHHHHHHHHCCSCCCCCCCSSSCCCEEEECCSSSSTTHHHHHHHH
T ss_pred HHHHHHHHhCCCCcCccccCCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3455566554321 2356999999999999999987765
No 243
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=95.14 E-value=0.039 Score=48.76 Aligned_cols=52 Identities=15% Similarity=0.176 Sum_probs=38.0
Q ss_pred CCcEEEEEEcCCCCChhHHHHHHhccccccc---------cC-----CeeEEEECCCCCCHHHHHH
Q 047336 180 TQLSVVAILDSIGLDKTAFTAEAYNSSYVKH---------YF-----DYLAWIPAPYQYDPDQILD 231 (290)
Q Consensus 180 ~~~~Vi~IvGmgGiGKTTLa~~vy~d~~v~~---------~F-----~~~~wV~vs~~~~~~~ll~ 231 (290)
+.-.++-|.|.+|+||||||..+..+..... .. ..++|++...+|+...+.+
T Consensus 96 ~~g~i~~i~G~~gsGKT~la~~la~~~~l~~~~~~~~~~~~~gg~~~~~v~yi~~e~~~~~~~l~~ 161 (322)
T 2i1q_A 96 ESQSVTEFAGVFGSGKTQIMHQSCVNLQNPEFLFYDEEAVSKGEVAQPKAVYIDTEGTFRPERIMQ 161 (322)
T ss_dssp ETTEEEEEEESTTSSHHHHHHHHHHHTTCGGGEECCTTTSCTTTTSSEEEEEEESSSCCCHHHHHH
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHHhccccccccccccccCCCCCceEEEEECCCCCCHHHHHH
Confidence 3457899999999999999988765322211 11 4689999998888776654
No 244
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=95.13 E-value=0.011 Score=47.56 Aligned_cols=21 Identities=19% Similarity=0.289 Sum_probs=19.1
Q ss_pred EEEEEcCCCCChhHHHHHHhc
Q 047336 184 VVAILDSIGLDKTAFTAEAYN 204 (290)
Q Consensus 184 Vi~IvGmgGiGKTTLa~~vy~ 204 (290)
-|+|+|.+|+|||||.+.+..
T Consensus 4 kv~ivG~~gvGKStLl~~l~~ 24 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMK 24 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 478999999999999998876
No 245
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=95.10 E-value=0.011 Score=49.02 Aligned_cols=23 Identities=22% Similarity=0.180 Sum_probs=20.6
Q ss_pred cEEEEEEcCCCCChhHHHHHHhc
Q 047336 182 LSVVAILDSIGLDKTAFTAEAYN 204 (290)
Q Consensus 182 ~~Vi~IvGmgGiGKTTLa~~vy~ 204 (290)
-.++.|+|..|+|||||++.+..
T Consensus 23 G~~~~i~G~~GsGKTtl~~~l~~ 45 (235)
T 2w0m_A 23 GFFIALTGEPGTGKTIFSLHFIA 45 (235)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHH
Confidence 46899999999999999998875
No 246
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=95.08 E-value=0.011 Score=48.89 Aligned_cols=21 Identities=10% Similarity=-0.032 Sum_probs=19.0
Q ss_pred EEEEEcCCCCChhHHHHHHhc
Q 047336 184 VVAILDSIGLDKTAFTAEAYN 204 (290)
Q Consensus 184 Vi~IvGmgGiGKTTLa~~vy~ 204 (290)
.|.|.|+.|+||||+|+.+.+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIME 22 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999999876
No 247
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=95.06 E-value=0.012 Score=52.25 Aligned_cols=25 Identities=20% Similarity=0.308 Sum_probs=22.6
Q ss_pred CcEEEEEEcCCCCChhHHHHHHhcc
Q 047336 181 QLSVVAILDSIGLDKTAFTAEAYNS 205 (290)
Q Consensus 181 ~~~Vi~IvGmgGiGKTTLa~~vy~d 205 (290)
+++++.|+|+-|.|||||.+.+...
T Consensus 3 ~i~v~~i~G~~GaGKTTll~~l~~~ 27 (318)
T 1nij_A 3 PIAVTLLTGFLGAGKTTLLRHILNE 27 (318)
T ss_dssp CEEEEEEEESSSSSCHHHHHHHHHS
T ss_pred cccEEEEEecCCCCHHHHHHHHHhh
Confidence 4789999999999999999999853
No 248
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=95.04 E-value=0.012 Score=47.90 Aligned_cols=24 Identities=17% Similarity=0.272 Sum_probs=21.0
Q ss_pred cEEEEEEcCCCCChhHHHHHHhcc
Q 047336 182 LSVVAILDSIGLDKTAFTAEAYNS 205 (290)
Q Consensus 182 ~~Vi~IvGmgGiGKTTLa~~vy~d 205 (290)
...|+|+|..|+|||||.+.+...
T Consensus 5 ~~kv~lvG~~g~GKSTLl~~l~~~ 28 (199)
T 2f9l_A 5 LFKVVLIGDSGVGKSNLLSRFTRN 28 (199)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECcCCCCHHHHHHHHhcC
Confidence 457899999999999999988764
No 249
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=95.03 E-value=0.013 Score=49.35 Aligned_cols=25 Identities=12% Similarity=0.011 Sum_probs=21.8
Q ss_pred CCcEEEEEEcCCCCChhHHHHHHhc
Q 047336 180 TQLSVVAILDSIGLDKTAFTAEAYN 204 (290)
Q Consensus 180 ~~~~Vi~IvGmgGiGKTTLa~~vy~ 204 (290)
....+|+|.|+.|+||||+++.+-.
T Consensus 14 ~~~~~i~i~G~~gsGKst~~~~l~~ 38 (236)
T 1q3t_A 14 MKTIQIAIDGPASSGKSTVAKIIAK 38 (236)
T ss_dssp CCCCEEEEECSSCSSHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHH
Confidence 4567899999999999999998865
No 250
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=95.03 E-value=0.012 Score=49.23 Aligned_cols=21 Identities=14% Similarity=0.067 Sum_probs=19.2
Q ss_pred EEEEEcCCCCChhHHHHHHhc
Q 047336 184 VVAILDSIGLDKTAFTAEAYN 204 (290)
Q Consensus 184 Vi~IvGmgGiGKTTLa~~vy~ 204 (290)
.|.|.|+.|+||||+|+.+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~ 22 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKD 22 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 588999999999999999876
No 251
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=95.03 E-value=0.062 Score=47.48 Aligned_cols=56 Identities=14% Similarity=0.081 Sum_probs=37.6
Q ss_pred cCCCCcEEEEEEcCCCCChhHHHHHHhccccccccCCeeEEEECCCCCCHHHHHHHHHHH
Q 047336 177 EGPTQLSVVAILDSIGLDKTAFTAEAYNSSYVKHYFDYLAWIPAPYQYDPDQILDTVTWL 236 (290)
Q Consensus 177 ~~~~~~~Vi~IvGmgGiGKTTLa~~vy~d~~v~~~F~~~~wV~vs~~~~~~~ll~~Il~~ 236 (290)
.+=..-.++-|.|.+|+||||||..+..+.... . ..++|++.- -+...+...++..
T Consensus 63 gGl~~G~l~li~G~pG~GKTtl~l~ia~~~a~~-g-~~vl~~slE--~s~~~l~~R~~~~ 118 (315)
T 3bh0_A 63 YGYKRRNFVLIAARPSMGKTAFALKQAKNMSDN-D-DVVNLHSLE--MGKKENIKRLIVT 118 (315)
T ss_dssp SSBCTTCEEEEECCTTSSHHHHHHHHHHHHHTT-T-CEEEEEESS--SCHHHHHHHHHHH
T ss_pred CCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHc-C-CeEEEEECC--CCHHHHHHHHHHH
Confidence 332345688889999999999998876532222 2 567787765 4566676666654
No 252
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=95.01 E-value=0.0087 Score=52.51 Aligned_cols=24 Identities=8% Similarity=0.171 Sum_probs=18.4
Q ss_pred CcEEEEEEcCCCCChhHHHHHHhc
Q 047336 181 QLSVVAILDSIGLDKTAFTAEAYN 204 (290)
Q Consensus 181 ~~~Vi~IvGmgGiGKTTLa~~vy~ 204 (290)
+..+|+|.|..|+||||+|+.+-+
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~ 27 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQ 27 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 456899999999999999998876
No 253
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=94.99 E-value=0.014 Score=50.43 Aligned_cols=24 Identities=13% Similarity=0.288 Sum_probs=21.2
Q ss_pred CcEEEEEEcCCCCChhHHHHHHhc
Q 047336 181 QLSVVAILDSIGLDKTAFTAEAYN 204 (290)
Q Consensus 181 ~~~Vi~IvGmgGiGKTTLa~~vy~ 204 (290)
.-.+++|+|+.|+|||||++.+..
T Consensus 24 ~g~~v~i~Gp~GsGKSTll~~l~g 47 (261)
T 2eyu_A 24 KMGLILVTGPTGSGKSTTIASMID 47 (261)
T ss_dssp SSEEEEEECSTTCSHHHHHHHHHH
T ss_pred CCCEEEEECCCCccHHHHHHHHHH
Confidence 457999999999999999998865
No 254
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=94.99 E-value=0.032 Score=53.97 Aligned_cols=42 Identities=12% Similarity=0.175 Sum_probs=35.0
Q ss_pred CcccccchhHHHHHHHHhcCCCCcEEEEEEcCCCCChhHHHHHHhc
Q 047336 159 RNTVGLDDRMEELLDLLIEGPTQLSVVAILDSIGLDKTAFTAEAYN 204 (290)
Q Consensus 159 ~~~vG~e~~~~~L~~~L~~~~~~~~Vi~IvGmgGiGKTTLa~~vy~ 204 (290)
.+++|.+..++.+...+..+ ..+.|+|..|+||||||+.+..
T Consensus 41 ~~i~G~~~~l~~l~~~i~~g----~~vll~Gp~GtGKTtlar~ia~ 82 (604)
T 3k1j_A 41 DQVIGQEHAVEVIKTAANQK----RHVLLIGEPGTGKSMLGQAMAE 82 (604)
T ss_dssp HHCCSCHHHHHHHHHHHHTT----CCEEEECCTTSSHHHHHHHHHH
T ss_pred ceEECchhhHhhccccccCC----CEEEEEeCCCCCHHHHHHHHhc
Confidence 45899888887777766654 3788999999999999999987
No 255
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=94.99 E-value=0.013 Score=51.87 Aligned_cols=25 Identities=8% Similarity=0.138 Sum_probs=22.0
Q ss_pred CCcEEEEEEcCCCCChhHHHHHHhc
Q 047336 180 TQLSVVAILDSIGLDKTAFTAEAYN 204 (290)
Q Consensus 180 ~~~~Vi~IvGmgGiGKTTLa~~vy~ 204 (290)
+.-.+++|+|+.|.|||||++.+..
T Consensus 124 ~~Ge~vaIvGpsGsGKSTLl~lL~g 148 (305)
T 2v9p_A 124 PKKNCLAFIGPPNTGKSMLCNSLIH 148 (305)
T ss_dssp TTCSEEEEECSSSSSHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhh
Confidence 3457899999999999999999875
No 256
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=94.96 E-value=0.034 Score=50.25 Aligned_cols=45 Identities=22% Similarity=0.238 Sum_probs=31.5
Q ss_pred CCcEEEEEEcCCCCChhHHHHHHhccccccccCCeeEEEECCCCCCH
Q 047336 180 TQLSVVAILDSIGLDKTAFTAEAYNSSYVKHYFDYLAWIPAPYQYDP 226 (290)
Q Consensus 180 ~~~~Vi~IvGmgGiGKTTLa~~vy~d~~v~~~F~~~~wV~vs~~~~~ 226 (290)
+.-.++.|.|.+|+|||||+..+.... ...=..++||+....++.
T Consensus 59 ~~G~i~~I~GppGsGKSTLal~la~~~--~~~gg~VlyId~E~s~~~ 103 (356)
T 3hr8_A 59 PRGRIVEIFGQESSGKTTLALHAIAEA--QKMGGVAAFIDAEHALDP 103 (356)
T ss_dssp ETTEEEEEEESTTSSHHHHHHHHHHHH--HHTTCCEEEEESSCCCCH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHH--HhcCCeEEEEecccccch
Confidence 446799999999999999999887632 211124567776655543
No 257
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=94.95 E-value=0.013 Score=45.35 Aligned_cols=22 Identities=18% Similarity=0.342 Sum_probs=19.4
Q ss_pred EEEEEcCCCCChhHHHHHHhcc
Q 047336 184 VVAILDSIGLDKTAFTAEAYNS 205 (290)
Q Consensus 184 Vi~IvGmgGiGKTTLa~~vy~d 205 (290)
-|.++|.+|+|||||+..+.+.
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~ 26 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4789999999999999988754
No 258
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=94.94 E-value=0.016 Score=46.29 Aligned_cols=24 Identities=8% Similarity=0.102 Sum_probs=21.1
Q ss_pred cEEEEEEcCCCCChhHHHHHHhcc
Q 047336 182 LSVVAILDSIGLDKTAFTAEAYNS 205 (290)
Q Consensus 182 ~~Vi~IvGmgGiGKTTLa~~vy~d 205 (290)
...|+++|.+|+|||||.+.+.+.
T Consensus 7 ~~~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 7 SYEIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 467899999999999999998763
No 259
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=94.94 E-value=0.012 Score=50.95 Aligned_cols=21 Identities=14% Similarity=0.412 Sum_probs=19.4
Q ss_pred EEEEEcCCCCChhHHHHHHhc
Q 047336 184 VVAILDSIGLDKTAFTAEAYN 204 (290)
Q Consensus 184 Vi~IvGmgGiGKTTLa~~vy~ 204 (290)
.++|+|..|+|||||.+.++.
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g 24 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFK 24 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 579999999999999999886
No 260
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=94.93 E-value=0.024 Score=45.54 Aligned_cols=26 Identities=12% Similarity=0.040 Sum_probs=22.1
Q ss_pred CCcEEEEEEcCCCCChhHHHHHHhcc
Q 047336 180 TQLSVVAILDSIGLDKTAFTAEAYNS 205 (290)
Q Consensus 180 ~~~~Vi~IvGmgGiGKTTLa~~vy~d 205 (290)
.....|.|+|.+|+|||||...+.+.
T Consensus 46 ~~~~~i~vvG~~g~GKSsll~~l~~~ 71 (193)
T 2ged_A 46 SYQPSIIIAGPQNSGKTSLLTLLTTD 71 (193)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 34568899999999999999988764
No 261
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=94.92 E-value=0.014 Score=52.37 Aligned_cols=22 Identities=18% Similarity=0.261 Sum_probs=20.2
Q ss_pred EEEEEEcCCCCChhHHHHHHhc
Q 047336 183 SVVAILDSIGLDKTAFTAEAYN 204 (290)
Q Consensus 183 ~Vi~IvGmgGiGKTTLa~~vy~ 204 (290)
.+|+|.|+.|+||||||+.+..
T Consensus 8 ~lI~I~GptgSGKTtla~~La~ 29 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAK 29 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred ceEEEECCCcCcHHHHHHHHHH
Confidence 5899999999999999998876
No 262
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=94.92 E-value=0.015 Score=48.97 Aligned_cols=23 Identities=13% Similarity=0.040 Sum_probs=20.6
Q ss_pred cEEEEEEcCCCCChhHHHHHHhc
Q 047336 182 LSVVAILDSIGLDKTAFTAEAYN 204 (290)
Q Consensus 182 ~~Vi~IvGmgGiGKTTLa~~vy~ 204 (290)
...|.|.|+.|+||||+|+.+-+
T Consensus 16 ~~~I~l~G~~GsGKsT~a~~La~ 38 (233)
T 1ak2_A 16 GVRAVLLGPPGAGKGTQAPKLAK 38 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 45789999999999999999876
No 263
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=94.89 E-value=0.059 Score=49.43 Aligned_cols=50 Identities=8% Similarity=0.065 Sum_probs=33.9
Q ss_pred CCcEEEEEEcCCCCChhHHHHHHhccccccc----cCCeeEEEECCCCCCHHHH
Q 047336 180 TQLSVVAILDSIGLDKTAFTAEAYNSSYVKH----YFDYLAWIPAPYQYDPDQI 229 (290)
Q Consensus 180 ~~~~Vi~IvGmgGiGKTTLa~~vy~d~~v~~----~F~~~~wV~vs~~~~~~~l 229 (290)
..-.++.|+|..|+|||||+..+.-.-.... .-..++|++....++...+
T Consensus 176 ~~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~~~~~rl 229 (400)
T 3lda_A 176 ETGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFRPVRL 229 (400)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHH
T ss_pred CCCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCccCHHHH
Confidence 3456899999999999999996642111111 2245888887777766554
No 264
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=94.89 E-value=0.014 Score=50.49 Aligned_cols=22 Identities=27% Similarity=0.237 Sum_probs=20.3
Q ss_pred EEEEEEcCCCCChhHHHHHHhc
Q 047336 183 SVVAILDSIGLDKTAFTAEAYN 204 (290)
Q Consensus 183 ~Vi~IvGmgGiGKTTLa~~vy~ 204 (290)
.+++|+|..|.|||||.+.+..
T Consensus 31 e~~~i~G~NGsGKSTLlk~l~G 52 (263)
T 2pjz_A 31 EKVIILGPNGSGKTTLLRAISG 52 (263)
T ss_dssp SEEEEECCTTSSHHHHHHHHTT
T ss_pred EEEEEECCCCCCHHHHHHHHhC
Confidence 4899999999999999999975
No 265
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=94.87 E-value=0.015 Score=50.73 Aligned_cols=22 Identities=14% Similarity=0.285 Sum_probs=20.2
Q ss_pred EEEEEEcCCCCChhHHHHHHhc
Q 047336 183 SVVAILDSIGLDKTAFTAEAYN 204 (290)
Q Consensus 183 ~Vi~IvGmgGiGKTTLa~~vy~ 204 (290)
.+|.|.|++|+||||+|+.+.+
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~ 24 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIA 24 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5789999999999999999876
No 266
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=94.83 E-value=0.03 Score=50.11 Aligned_cols=35 Identities=17% Similarity=0.156 Sum_probs=25.8
Q ss_pred HHHHHHhcCCCCcEEEEEEcCCCCChhHHHHHHhc
Q 047336 170 ELLDLLIEGPTQLSVVAILDSIGLDKTAFTAEAYN 204 (290)
Q Consensus 170 ~L~~~L~~~~~~~~Vi~IvGmgGiGKTTLa~~vy~ 204 (290)
.+.+-+.....+..+|+|+|.+|+|||||+..+..
T Consensus 44 ~~~~~l~~~~~~~~~i~i~G~~g~GKSTl~~~l~~ 78 (341)
T 2p67_A 44 QLLDAIMPYCGNTLRLGVTGTPGAGKSTFLEAFGM 78 (341)
T ss_dssp HHHHHHGGGCSCSEEEEEEECTTSCHHHHHHHHHH
T ss_pred HHHHhCCcccCCCEEEEEEcCCCCCHHHHHHHHHH
Confidence 34433333335688999999999999999998853
No 267
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=94.83 E-value=0.015 Score=45.63 Aligned_cols=24 Identities=25% Similarity=0.288 Sum_probs=20.7
Q ss_pred cEEEEEEcCCCCChhHHHHHHhcc
Q 047336 182 LSVVAILDSIGLDKTAFTAEAYNS 205 (290)
Q Consensus 182 ~~Vi~IvGmgGiGKTTLa~~vy~d 205 (290)
..-|.|+|.+|+|||||.+.+.+.
T Consensus 4 ~~ki~i~G~~~vGKSsl~~~l~~~ 27 (175)
T 2nzj_A 4 LYRVVLLGDPGVGKTSLASLFAGK 27 (175)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHCC
T ss_pred EEEEEEECCCCccHHHHHHHHhcC
Confidence 456889999999999999988764
No 268
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=94.83 E-value=0.017 Score=50.71 Aligned_cols=25 Identities=20% Similarity=0.239 Sum_probs=20.9
Q ss_pred CCcEEEEEEcCCCCChhHHHHHHhc
Q 047336 180 TQLSVVAILDSIGLDKTAFTAEAYN 204 (290)
Q Consensus 180 ~~~~Vi~IvGmgGiGKTTLa~~vy~ 204 (290)
...++|+|+|-||+||||+|-.+-.
T Consensus 39 ~~~~vI~v~~KGGvGKTT~a~nLA~ 63 (307)
T 3end_A 39 TGAKVFAVYGKGGIGKSTTSSNLSA 63 (307)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCceEEEEECCCCccHHHHHHHHHH
Confidence 4678999999999999999976654
No 269
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=94.80 E-value=0.023 Score=51.17 Aligned_cols=45 Identities=22% Similarity=0.191 Sum_probs=31.6
Q ss_pred CCcEEEEEEcCCCCChhHHHHHHhccccccccCCeeEEEECCCCCCH
Q 047336 180 TQLSVVAILDSIGLDKTAFTAEAYNSSYVKHYFDYLAWIPAPYQYDP 226 (290)
Q Consensus 180 ~~~~Vi~IvGmgGiGKTTLa~~vy~d~~v~~~F~~~~wV~vs~~~~~ 226 (290)
+.-.++.|.|.+|+||||||..+.... ...=..++|++....++.
T Consensus 59 ~~G~iv~I~G~pGsGKTtLal~la~~~--~~~g~~vlyi~~E~~~~~ 103 (349)
T 2zr9_A 59 PRGRVIEIYGPESSGKTTVALHAVANA--QAAGGIAAFIDAEHALDP 103 (349)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHHHHH--HHTTCCEEEEESSCCCCH
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHH--HhCCCeEEEEECCCCcCH
Confidence 345689999999999999998887522 211135677777666553
No 270
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=94.80 E-value=0.025 Score=53.51 Aligned_cols=37 Identities=22% Similarity=0.275 Sum_probs=25.8
Q ss_pred HHHHHHHHhcC-------CCCcEEEEEEcCCCCChhHHHHHHhc
Q 047336 168 MEELLDLLIEG-------PTQLSVVAILDSIGLDKTAFTAEAYN 204 (290)
Q Consensus 168 ~~~L~~~L~~~-------~~~~~Vi~IvGmgGiGKTTLa~~vy~ 204 (290)
.++|.++|... ..+..+|+|+|.+|+||||++..+-.
T Consensus 80 ~~eL~~ll~~~~~~~~~~~~~~~vI~ivG~~GvGKTTl~~kLA~ 123 (504)
T 2j37_W 80 FKELVKLVDPGVKAWTPTKGKQNVIMFVGLQGSGKTTTCSKLAY 123 (504)
T ss_dssp HHHHHHHHCCCCCCCCCCSS--EEEEEECSTTSSHHHHHHHHHH
T ss_pred HHHHHHHhccccchhccccCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 45555555432 13467999999999999999987763
No 271
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=94.79 E-value=0.029 Score=50.19 Aligned_cols=34 Identities=18% Similarity=0.200 Sum_probs=26.0
Q ss_pred HHHHHHhcCCCCcEEEEEEcCCCCChhHHHHHHh
Q 047336 170 ELLDLLIEGPTQLSVVAILDSIGLDKTAFTAEAY 203 (290)
Q Consensus 170 ~L~~~L~~~~~~~~Vi~IvGmgGiGKTTLa~~vy 203 (290)
.+.+-+.-.-.+-.+++|+|..|+|||||.+.+.
T Consensus 43 ~~l~~i~~~~~~g~~v~i~G~~GaGKSTLl~~l~ 76 (337)
T 2qm8_A 43 DLIDAVLPQTGRAIRVGITGVPGVGKSTTIDALG 76 (337)
T ss_dssp HHHHHHGGGCCCSEEEEEECCTTSCHHHHHHHHH
T ss_pred HHHHhCCcccCCCeEEEEECCCCCCHHHHHHHHH
Confidence 3444444333457899999999999999999986
No 272
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=94.75 E-value=0.028 Score=52.25 Aligned_cols=24 Identities=17% Similarity=0.200 Sum_probs=21.0
Q ss_pred CcEEEEEEcCCCCChhHHHHHHhc
Q 047336 181 QLSVVAILDSIGLDKTAFTAEAYN 204 (290)
Q Consensus 181 ~~~Vi~IvGmgGiGKTTLa~~vy~ 204 (290)
+..||.++|.+|+||||++..+..
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~ 122 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLAR 122 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHHH
Confidence 478999999999999998877754
No 273
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=94.74 E-value=0.016 Score=44.93 Aligned_cols=24 Identities=29% Similarity=0.335 Sum_probs=20.3
Q ss_pred cEEEEEEcCCCCChhHHHHHHhcc
Q 047336 182 LSVVAILDSIGLDKTAFTAEAYNS 205 (290)
Q Consensus 182 ~~Vi~IvGmgGiGKTTLa~~vy~d 205 (290)
..-|.|+|.+|+|||||...+.+.
T Consensus 4 ~~~i~v~G~~~~GKssl~~~l~~~ 27 (168)
T 1u8z_A 4 LHKVIMVGSGGVGKSALTLQFMYD 27 (168)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHHhC
Confidence 346789999999999999988754
No 274
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=94.74 E-value=0.02 Score=44.54 Aligned_cols=24 Identities=4% Similarity=0.090 Sum_probs=20.4
Q ss_pred cEEEEEEcCCCCChhHHHHHHhcc
Q 047336 182 LSVVAILDSIGLDKTAFTAEAYNS 205 (290)
Q Consensus 182 ~~Vi~IvGmgGiGKTTLa~~vy~d 205 (290)
.--|.|+|.+|+|||||+..+.+.
T Consensus 5 ~~~i~v~G~~~~GKssl~~~l~~~ 28 (168)
T 1z2a_A 5 AIKMVVVGNGAVGKSSMIQRYCKG 28 (168)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHC
T ss_pred eEEEEEECcCCCCHHHHHHHHHcC
Confidence 456789999999999999988763
No 275
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=94.73 E-value=0.014 Score=50.52 Aligned_cols=23 Identities=17% Similarity=0.140 Sum_probs=20.6
Q ss_pred cEEEEEEcCCCCChhHHHHHHhc
Q 047336 182 LSVVAILDSIGLDKTAFTAEAYN 204 (290)
Q Consensus 182 ~~Vi~IvGmgGiGKTTLa~~vy~ 204 (290)
-.++.|+|.+|+|||||+..+..
T Consensus 30 G~i~~i~G~~GsGKTtl~~~l~~ 52 (279)
T 1nlf_A 30 GTVGALVSPGGAGKSMLALQLAA 52 (279)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHH
Confidence 46899999999999999998875
No 276
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=94.72 E-value=0.016 Score=46.44 Aligned_cols=23 Identities=17% Similarity=0.300 Sum_probs=20.0
Q ss_pred EEEEEEcCCCCChhHHHHHHhcc
Q 047336 183 SVVAILDSIGLDKTAFTAEAYNS 205 (290)
Q Consensus 183 ~Vi~IvGmgGiGKTTLa~~vy~d 205 (290)
-.|.++|.+|+|||||+..+.+.
T Consensus 22 ~ki~vvG~~~~GKSsli~~l~~~ 44 (190)
T 3con_A 22 YKLVVVGAGGVGKSALTIQLIQN 44 (190)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 46789999999999999988764
No 277
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=94.72 E-value=0.018 Score=50.57 Aligned_cols=24 Identities=17% Similarity=0.054 Sum_probs=21.3
Q ss_pred CcEEEEEEcCCCCChhHHHHHHhc
Q 047336 181 QLSVVAILDSIGLDKTAFTAEAYN 204 (290)
Q Consensus 181 ~~~Vi~IvGmgGiGKTTLa~~vy~ 204 (290)
...+|+|+|.+|+||||++..+..
T Consensus 97 ~~~~i~i~g~~G~GKTT~~~~la~ 120 (295)
T 1ls1_A 97 DRNLWFLVGLQGSGKTTTAAKLAL 120 (295)
T ss_dssp SSEEEEEECCTTTTHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 367999999999999999998876
No 278
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=94.70 E-value=0.016 Score=50.86 Aligned_cols=23 Identities=22% Similarity=0.221 Sum_probs=21.2
Q ss_pred cEEEEEEcCCCCChhHHHHHHhc
Q 047336 182 LSVVAILDSIGLDKTAFTAEAYN 204 (290)
Q Consensus 182 ~~Vi~IvGmgGiGKTTLa~~vy~ 204 (290)
-.+++|+|..|.|||||.+.+..
T Consensus 64 Ge~~~i~G~NGsGKSTLlk~l~G 86 (290)
T 2bbs_A 64 GQLLAVAGSTGAGKTSLLMMIMG 86 (290)
T ss_dssp TCEEEEEESTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCcHHHHHHHHhc
Confidence 46899999999999999999986
No 279
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=94.69 E-value=0.011 Score=52.24 Aligned_cols=24 Identities=13% Similarity=0.202 Sum_probs=21.4
Q ss_pred CcEEEEEEcCCCCChhHHHHHHhc
Q 047336 181 QLSVVAILDSIGLDKTAFTAEAYN 204 (290)
Q Consensus 181 ~~~Vi~IvGmgGiGKTTLa~~vy~ 204 (290)
.-.+++|+|..|.|||||++.+..
T Consensus 79 ~Ge~vaivG~sGsGKSTLl~ll~g 102 (306)
T 3nh6_A 79 PGQTLALVGPSGAGKSTILRLLFR 102 (306)
T ss_dssp TTCEEEEESSSCHHHHHHHHHHTT
T ss_pred CCCEEEEECCCCchHHHHHHHHHc
Confidence 356899999999999999999975
No 280
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=94.69 E-value=0.016 Score=46.53 Aligned_cols=23 Identities=13% Similarity=-0.146 Sum_probs=20.0
Q ss_pred cEEEEEEcCCCCChhHHHHHHhc
Q 047336 182 LSVVAILDSIGLDKTAFTAEAYN 204 (290)
Q Consensus 182 ~~Vi~IvGmgGiGKTTLa~~vy~ 204 (290)
.--|.|+|.+|+|||||++.+.+
T Consensus 14 ~~ki~vvG~~~~GKssL~~~l~~ 36 (198)
T 3t1o_A 14 NFKIVYYGPGLSGKTTNLKWIYS 36 (198)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH
T ss_pred ccEEEEECCCCCCHHHHHHHHHh
Confidence 45678999999999999988875
No 281
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=94.67 E-value=0.027 Score=44.38 Aligned_cols=25 Identities=20% Similarity=0.272 Sum_probs=21.4
Q ss_pred CCcEEEEEEcCCCCChhHHHHHHhc
Q 047336 180 TQLSVVAILDSIGLDKTAFTAEAYN 204 (290)
Q Consensus 180 ~~~~Vi~IvGmgGiGKTTLa~~vy~ 204 (290)
.+...|.|+|.+|+|||||...+.+
T Consensus 6 ~~~~~i~v~G~~~~GKssl~~~l~~ 30 (178)
T 2lkc_A 6 ERPPVVTIMGHVDHGKTTLLDAIRH 30 (178)
T ss_dssp CCCCEEEEESCTTTTHHHHHHHHHT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhC
Confidence 3466789999999999999998865
No 282
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=94.64 E-value=0.017 Score=45.02 Aligned_cols=21 Identities=24% Similarity=0.238 Sum_probs=18.9
Q ss_pred EEEEEcCCCCChhHHHHHHhc
Q 047336 184 VVAILDSIGLDKTAFTAEAYN 204 (290)
Q Consensus 184 Vi~IvGmgGiGKTTLa~~vy~ 204 (290)
-|.|+|.+|+|||||.+.+.+
T Consensus 4 ki~~vG~~~~GKSsli~~l~~ 24 (166)
T 3q72_A 4 KVLLLGAPGVGKSALARIFGG 24 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHcC
Confidence 478999999999999998865
No 283
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=94.64 E-value=0.019 Score=44.78 Aligned_cols=23 Identities=17% Similarity=0.248 Sum_probs=19.7
Q ss_pred EEEEEEcCCCCChhHHHHHHhcc
Q 047336 183 SVVAILDSIGLDKTAFTAEAYNS 205 (290)
Q Consensus 183 ~Vi~IvGmgGiGKTTLa~~vy~d 205 (290)
--|.|+|.+|+|||||...+.+.
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~ 26 (172)
T 2erx_A 4 YRVAVFGAGGVGKSSLVLRFVKG 26 (172)
T ss_dssp EEEEEECCTTSSHHHHHHHHHTC
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 35789999999999999988763
No 284
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=94.63 E-value=0.018 Score=44.76 Aligned_cols=23 Identities=26% Similarity=0.332 Sum_probs=19.7
Q ss_pred EEEEEEcCCCCChhHHHHHHhcc
Q 047336 183 SVVAILDSIGLDKTAFTAEAYNS 205 (290)
Q Consensus 183 ~Vi~IvGmgGiGKTTLa~~vy~d 205 (290)
--|.|+|.+|+|||||.+.+.+.
T Consensus 4 ~ki~v~G~~~~GKssli~~l~~~ 26 (167)
T 1c1y_A 4 YKLVVLGSGGVGKSALTVQFVQG 26 (167)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 35789999999999999988764
No 285
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=94.60 E-value=0.029 Score=46.75 Aligned_cols=36 Identities=11% Similarity=0.135 Sum_probs=25.9
Q ss_pred HHHHHHHHhcCCCCcEEEEEEcCCCCChhHHHHHHhc
Q 047336 168 MEELLDLLIEGPTQLSVVAILDSIGLDKTAFTAEAYN 204 (290)
Q Consensus 168 ~~~L~~~L~~~~~~~~Vi~IvGmgGiGKTTLa~~vy~ 204 (290)
...|..++.. -++..-+-|+|++|+||||+|..+.+
T Consensus 45 ~~~l~~~~~~-iPkkn~ili~GPPGtGKTt~a~ala~ 80 (212)
T 1tue_A 45 LGALKSFLKG-TPKKNCLVFCGPANTGKSYFGMSFIH 80 (212)
T ss_dssp HHHHHHHHHT-CTTCSEEEEESCGGGCHHHHHHHHHH
T ss_pred HHHHHHHHhc-CCcccEEEEECCCCCCHHHHHHHHHH
Confidence 4555555543 33345689999999999998877766
No 286
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=94.57 E-value=0.022 Score=44.88 Aligned_cols=26 Identities=15% Similarity=0.254 Sum_probs=22.0
Q ss_pred CCcEEEEEEcCCCCChhHHHHHHhcc
Q 047336 180 TQLSVVAILDSIGLDKTAFTAEAYNS 205 (290)
Q Consensus 180 ~~~~Vi~IvGmgGiGKTTLa~~vy~d 205 (290)
....-|.|+|.+|+|||||...+.++
T Consensus 7 ~~~~~i~v~G~~~~GKssl~~~l~~~ 32 (181)
T 3tw8_B 7 DHLFKLLIIGDSGVGKSSLLLRFADN 32 (181)
T ss_dssp CEEEEEEEECCTTSCHHHHHHHHCSC
T ss_pred CcceEEEEECCCCCCHHHHHHHHhcC
Confidence 34567899999999999999988764
No 287
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=94.55 E-value=0.019 Score=44.76 Aligned_cols=23 Identities=17% Similarity=0.239 Sum_probs=19.9
Q ss_pred EEEEEEcCCCCChhHHHHHHhcc
Q 047336 183 SVVAILDSIGLDKTAFTAEAYNS 205 (290)
Q Consensus 183 ~Vi~IvGmgGiGKTTLa~~vy~d 205 (290)
--|.|+|.+|+|||||.+.+.+.
T Consensus 7 ~~i~v~G~~~~GKSsli~~l~~~ 29 (170)
T 1z0j_A 7 LKVCLLGDTGVGKSSIMWRFVED 29 (170)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 45789999999999999988764
No 288
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=94.55 E-value=0.057 Score=44.99 Aligned_cols=24 Identities=13% Similarity=-0.036 Sum_probs=21.2
Q ss_pred cEEEEEEcCCCCChhHHHHHHhcc
Q 047336 182 LSVVAILDSIGLDKTAFTAEAYNS 205 (290)
Q Consensus 182 ~~Vi~IvGmgGiGKTTLa~~vy~d 205 (290)
-..|.|-|+.|+||||+++.+.+.
T Consensus 6 g~~i~~eG~~gsGKsT~~~~l~~~ 29 (213)
T 4edh_A 6 GLFVTLEGPEGAGKSTNRDYLAER 29 (213)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHH
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHH
Confidence 468899999999999999999873
No 289
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=94.54 E-value=0.019 Score=44.65 Aligned_cols=22 Identities=9% Similarity=0.203 Sum_probs=19.0
Q ss_pred EEEEEcCCCCChhHHHHHHhcc
Q 047336 184 VVAILDSIGLDKTAFTAEAYNS 205 (290)
Q Consensus 184 Vi~IvGmgGiGKTTLa~~vy~d 205 (290)
-|.|+|..|+|||||...+.+.
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1ek0_A 5 KLVLLGEAAVGKSSIVLRFVSN 26 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999888654
No 290
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=94.54 E-value=0.022 Score=45.82 Aligned_cols=25 Identities=20% Similarity=0.306 Sum_probs=21.9
Q ss_pred CcEEEEEEcCCCCChhHHHHHHhcc
Q 047336 181 QLSVVAILDSIGLDKTAFTAEAYNS 205 (290)
Q Consensus 181 ~~~Vi~IvGmgGiGKTTLa~~vy~d 205 (290)
....|.|+|..|+|||||...+.+.
T Consensus 22 ~~~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 1svi_A 22 GLPEIALAGRSNVGKSSFINSLINR 46 (195)
T ss_dssp CCCEEEEEEBTTSSHHHHHHHHHTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4677899999999999999988764
No 291
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=94.54 E-value=0.023 Score=45.47 Aligned_cols=26 Identities=15% Similarity=0.227 Sum_probs=22.0
Q ss_pred CcEEEEEEcCCCCChhHHHHHHhccc
Q 047336 181 QLSVVAILDSIGLDKTAFTAEAYNSS 206 (290)
Q Consensus 181 ~~~Vi~IvGmgGiGKTTLa~~vy~d~ 206 (290)
....|.|+|..|+|||||...+.+..
T Consensus 22 ~~~~i~v~G~~~~GKSsli~~l~~~~ 47 (195)
T 3pqc_A 22 LKGEVAFVGRSNVGKSSLLNALFNRK 47 (195)
T ss_dssp TTCEEEEEEBTTSSHHHHHHHHHTSC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHcCc
Confidence 35678899999999999999887753
No 292
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=94.52 E-value=0.021 Score=48.18 Aligned_cols=24 Identities=17% Similarity=0.214 Sum_probs=21.4
Q ss_pred cEEEEEEcCCCCChhHHHHHHhcc
Q 047336 182 LSVVAILDSIGLDKTAFTAEAYNS 205 (290)
Q Consensus 182 ~~Vi~IvGmgGiGKTTLa~~vy~d 205 (290)
...|.|.|..|+||||+++.+.+.
T Consensus 2 ~~~i~~~G~~g~GKtt~~~~l~~~ 25 (241)
T 2ocp_A 2 PRRLSIEGNIAVGKSTFVKLLTKT 25 (241)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHH
Confidence 467999999999999999999873
No 293
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=94.49 E-value=0.024 Score=44.26 Aligned_cols=24 Identities=17% Similarity=0.093 Sum_probs=20.5
Q ss_pred cEEEEEEcCCCCChhHHHHHHhcc
Q 047336 182 LSVVAILDSIGLDKTAFTAEAYNS 205 (290)
Q Consensus 182 ~~Vi~IvGmgGiGKTTLa~~vy~d 205 (290)
.--|.|+|.+|+|||||...+.+.
T Consensus 6 ~~~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1z08_A 6 SFKVVLLGEGCVGKTSLVLRYCEN 29 (170)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHC
T ss_pred ceEEEEECcCCCCHHHHHHHHHcC
Confidence 456889999999999999888754
No 294
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=94.49 E-value=0.033 Score=50.27 Aligned_cols=45 Identities=22% Similarity=0.196 Sum_probs=32.0
Q ss_pred CCcEEEEEEcCCCCChhHHHHHHhccccccccCCeeEEEECCCCCCH
Q 047336 180 TQLSVVAILDSIGLDKTAFTAEAYNSSYVKHYFDYLAWIPAPYQYDP 226 (290)
Q Consensus 180 ~~~~Vi~IvGmgGiGKTTLa~~vy~d~~v~~~F~~~~wV~vs~~~~~ 226 (290)
+.-.++-|.|.+|+||||||..+.... ...=..++|++....++.
T Consensus 61 ~~G~ii~I~G~pGsGKTtLal~la~~~--~~~g~~vlyid~E~s~~~ 105 (356)
T 1u94_A 61 PMGRIVEIYGPESSGKTTLTLQVIAAA--QREGKTCAFIDAEHALDP 105 (356)
T ss_dssp ETTSEEEEECSTTSSHHHHHHHHHHHH--HHTTCCEEEEESSCCCCH
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHH--HHCCCeEEEEeCCCCccH
Confidence 345688999999999999998876532 222235788888666653
No 295
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=94.48 E-value=0.021 Score=50.90 Aligned_cols=22 Identities=9% Similarity=0.188 Sum_probs=20.1
Q ss_pred EEEEEEcCCCCChhHHHHHHhc
Q 047336 183 SVVAILDSIGLDKTAFTAEAYN 204 (290)
Q Consensus 183 ~Vi~IvGmgGiGKTTLa~~vy~ 204 (290)
.+|.|+|+.|+||||||+.+..
T Consensus 6 ~~i~i~GptGsGKTtla~~La~ 27 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALAD 27 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 5899999999999999998876
No 296
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=94.47 E-value=0.021 Score=44.28 Aligned_cols=23 Identities=30% Similarity=0.352 Sum_probs=19.4
Q ss_pred EEEEEEcCCCCChhHHHHHHhcc
Q 047336 183 SVVAILDSIGLDKTAFTAEAYNS 205 (290)
Q Consensus 183 ~Vi~IvGmgGiGKTTLa~~vy~d 205 (290)
--|.|+|.+|+|||||...+.+.
T Consensus 4 ~~i~v~G~~~~GKSsli~~l~~~ 26 (167)
T 1kao_A 4 YKVVVLGSGGVGKSALTVQFVTG 26 (167)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHcC
Confidence 35789999999999999887653
No 297
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=94.47 E-value=0.021 Score=52.62 Aligned_cols=25 Identities=20% Similarity=0.272 Sum_probs=22.4
Q ss_pred CCcEEEEEEcCCCCChhHHHHHHhc
Q 047336 180 TQLSVVAILDSIGLDKTAFTAEAYN 204 (290)
Q Consensus 180 ~~~~Vi~IvGmgGiGKTTLa~~vy~ 204 (290)
....+++|+|..|+|||||.+.+..
T Consensus 67 ~~~~~valvG~nGaGKSTLln~L~G 91 (413)
T 1tq4_A 67 SSVLNVAVTGETGSGKSSFINTLRG 91 (413)
T ss_dssp HCCEEEEEEECTTSSHHHHHHHHHT
T ss_pred cCCeEEEEECCCCCcHHHHHHHHhC
Confidence 3467999999999999999999987
No 298
>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10
Probab=94.46 E-value=0.021 Score=48.83 Aligned_cols=22 Identities=27% Similarity=0.265 Sum_probs=18.9
Q ss_pred EEEEEEcCCCCChhHHHHHHhc
Q 047336 183 SVVAILDSIGLDKTAFTAEAYN 204 (290)
Q Consensus 183 ~Vi~IvGmgGiGKTTLa~~vy~ 204 (290)
++|+|.|-||+||||+|-.+-.
T Consensus 2 ~vI~vs~KGGvGKTT~a~nLA~ 23 (269)
T 1cp2_A 2 RQVAIYGKGGIGKSTTTQNLTS 23 (269)
T ss_dssp EEEEEEECTTSSHHHHHHHHHH
T ss_pred cEEEEecCCCCcHHHHHHHHHH
Confidence 5888899999999999977654
No 299
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=94.44 E-value=0.029 Score=46.90 Aligned_cols=40 Identities=15% Similarity=0.125 Sum_probs=27.0
Q ss_pred CcEEEEEEcCCCCChhHHHHHHhccccccccCCeeEEEECCC
Q 047336 181 QLSVVAILDSIGLDKTAFTAEAYNSSYVKHYFDYLAWIPAPY 222 (290)
Q Consensus 181 ~~~Vi~IvGmgGiGKTTLa~~vy~d~~v~~~F~~~~wV~vs~ 222 (290)
.-.++.|.|.+|+||||||..+.... . ..=..++|++...
T Consensus 22 ~G~~~~i~G~~GsGKTtl~~~~~~~~-~-~~~~~v~~~~~e~ 61 (247)
T 2dr3_A 22 ERNVVLLSGGPGTGKTIFSQQFLWNG-L-KMGEPGIYVALEE 61 (247)
T ss_dssp TTCEEEEEECTTSSHHHHHHHHHHHH-H-HTTCCEEEEESSS
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHH-H-hcCCeEEEEEccC
Confidence 34689999999999999987665421 1 1113467777554
No 300
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=94.42 E-value=0.027 Score=44.01 Aligned_cols=23 Identities=13% Similarity=0.205 Sum_probs=19.5
Q ss_pred cEEEEEEcCCCCChhHHHHHHhc
Q 047336 182 LSVVAILDSIGLDKTAFTAEAYN 204 (290)
Q Consensus 182 ~~Vi~IvGmgGiGKTTLa~~vy~ 204 (290)
+--|.|+|.+|+|||||...+.+
T Consensus 2 ~~ki~ivG~~~~GKSsli~~l~~ 24 (169)
T 3q85_A 2 VFKVMLVGESGVGKSTLAGTFGG 24 (169)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHC
T ss_pred cEEEEEECCCCCCHHHHHHHHHh
Confidence 34578999999999999998853
No 301
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=94.42 E-value=0.024 Score=46.57 Aligned_cols=26 Identities=12% Similarity=0.040 Sum_probs=22.0
Q ss_pred CCcEEEEEEcCCCCChhHHHHHHhcc
Q 047336 180 TQLSVVAILDSIGLDKTAFTAEAYNS 205 (290)
Q Consensus 180 ~~~~Vi~IvGmgGiGKTTLa~~vy~d 205 (290)
.....|.|+|.+|+|||||+..+.+.
T Consensus 10 ~~~~~i~~~G~~g~GKTsl~~~l~~~ 35 (218)
T 1nrj_B 10 SYQPSIIIAGPQNSGKTSLLTLLTTD 35 (218)
T ss_dssp CCCCEEEEECSTTSSHHHHHHHHHHS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 34667889999999999999988764
No 302
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=94.42 E-value=0.021 Score=45.44 Aligned_cols=23 Identities=13% Similarity=0.043 Sum_probs=20.3
Q ss_pred EEEEEEcCCCCChhHHHHHHhcc
Q 047336 183 SVVAILDSIGLDKTAFTAEAYNS 205 (290)
Q Consensus 183 ~Vi~IvGmgGiGKTTLa~~vy~d 205 (290)
..|+|+|.+|+|||||.+.+...
T Consensus 5 ~ki~ivG~~g~GKStLl~~l~~~ 27 (172)
T 2gj8_A 5 MKVVIAGRPNAGKSSLLNALAGR 27 (172)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTS
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 46889999999999999998764
No 303
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=94.41 E-value=0.025 Score=50.64 Aligned_cols=25 Identities=8% Similarity=0.264 Sum_probs=21.8
Q ss_pred CcEEEEEEcCCCCChhHHHHHHhcc
Q 047336 181 QLSVVAILDSIGLDKTAFTAEAYNS 205 (290)
Q Consensus 181 ~~~Vi~IvGmgGiGKTTLa~~vy~d 205 (290)
+..+|.|+|+.|+||||||..+-..
T Consensus 39 ~~~lIvI~GPTgsGKTtLa~~LA~~ 63 (339)
T 3a8t_A 39 KEKLLVLMGATGTGKSRLSIDLAAH 63 (339)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHTT
T ss_pred CCceEEEECCCCCCHHHHHHHHHHH
Confidence 3468999999999999999998773
No 304
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=94.40 E-value=0.025 Score=50.89 Aligned_cols=25 Identities=16% Similarity=0.056 Sum_probs=22.2
Q ss_pred CCcEEEEEEcCCCCChhHHHHHHhc
Q 047336 180 TQLSVVAILDSIGLDKTAFTAEAYN 204 (290)
Q Consensus 180 ~~~~Vi~IvGmgGiGKTTLa~~vy~ 204 (290)
....+|+|+|.+|+|||||...+..
T Consensus 72 ~~~~~v~lvG~pgaGKSTLln~L~~ 96 (349)
T 2www_A 72 PLAFRVGLSGPPGAGKSTFIEYFGK 96 (349)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHH
T ss_pred cCceEEEEEcCCCCCHHHHHHHHHH
Confidence 3478999999999999999998875
No 305
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=94.38 E-value=0.021 Score=51.74 Aligned_cols=23 Identities=9% Similarity=0.117 Sum_probs=21.0
Q ss_pred cEEEEEEcCCCCChhHHHHHHhc
Q 047336 182 LSVVAILDSIGLDKTAFTAEAYN 204 (290)
Q Consensus 182 ~~Vi~IvGmgGiGKTTLa~~vy~ 204 (290)
=.+++|+|+.|.|||||.+.+..
T Consensus 54 Gei~~IiGpnGaGKSTLlr~i~G 76 (366)
T 3tui_C 54 GQIYGVIGASGAGKSTLIRCVNL 76 (366)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHT
T ss_pred CCEEEEEcCCCchHHHHHHHHhc
Confidence 46899999999999999999976
No 306
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=94.37 E-value=0.021 Score=45.66 Aligned_cols=25 Identities=12% Similarity=0.032 Sum_probs=20.7
Q ss_pred CcEEEEEEcCCCCChhHHHHHHhcc
Q 047336 181 QLSVVAILDSIGLDKTAFTAEAYNS 205 (290)
Q Consensus 181 ~~~Vi~IvGmgGiGKTTLa~~vy~d 205 (290)
..--|.|+|.+|+|||||++.+.++
T Consensus 6 ~~~ki~v~G~~~vGKSsli~~l~~~ 30 (184)
T 1m7b_A 6 VKCKIVVVGDSQCGKTALLHVFAKD 30 (184)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEEEECCCCCCHHHHHHHHhcC
Confidence 3456789999999999999988654
No 307
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=94.37 E-value=0.023 Score=52.42 Aligned_cols=26 Identities=27% Similarity=0.272 Sum_probs=22.7
Q ss_pred CCcEEEEEEcCCCCChhHHHHHHhcc
Q 047336 180 TQLSVVAILDSIGLDKTAFTAEAYNS 205 (290)
Q Consensus 180 ~~~~Vi~IvGmgGiGKTTLa~~vy~d 205 (290)
....+|.|+|++|+||||+|+.+...
T Consensus 256 ~~~~lIil~G~pGSGKSTla~~L~~~ 281 (416)
T 3zvl_A 256 PNPEVVVAVGFPGAGKSTFIQEHLVS 281 (416)
T ss_dssp SSCCEEEEESCTTSSHHHHHHHHTGG
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHh
Confidence 35689999999999999999998763
No 308
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=94.37 E-value=0.027 Score=44.43 Aligned_cols=25 Identities=28% Similarity=0.353 Sum_probs=21.1
Q ss_pred CcEEEEEEcCCCCChhHHHHHHhcc
Q 047336 181 QLSVVAILDSIGLDKTAFTAEAYNS 205 (290)
Q Consensus 181 ~~~Vi~IvGmgGiGKTTLa~~vy~d 205 (290)
...-|.|+|.+|+|||||...+.++
T Consensus 7 ~~~~i~v~G~~~~GKSsli~~l~~~ 31 (182)
T 1ky3_A 7 NILKVIILGDSGVGKTSLMHRYVND 31 (182)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhC
Confidence 4567899999999999999887653
No 309
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=94.36 E-value=0.027 Score=55.85 Aligned_cols=46 Identities=20% Similarity=0.259 Sum_probs=36.6
Q ss_pred CcccccchhHHHHHHHHhc---C----CCCcEEEEEEcCCCCChhHHHHHHhc
Q 047336 159 RNTVGLDDRMEELLDLLIE---G----PTQLSVVAILDSIGLDKTAFTAEAYN 204 (290)
Q Consensus 159 ~~~vG~e~~~~~L~~~L~~---~----~~~~~Vi~IvGmgGiGKTTLa~~vy~ 204 (290)
..++|.+..++.|...+.. + ......+-++|++|+|||+||+.+.+
T Consensus 458 ~~v~g~~~~~~~l~~~i~~~~~g~~~~~~p~~~~ll~G~~GtGKT~la~~la~ 510 (758)
T 1r6b_X 458 MLVFGQDKAIEALTEAIKMARAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSK 510 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHHTTCSCTTSCSEEEEEECSTTSSHHHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCcHHHHHHHHHH
Confidence 4588999999888887753 1 12345788999999999999999987
No 310
>2afh_E Nitrogenase iron protein 1; nitrogen fixation, iron-sulfur, metal-binding, molybdenum, oxidoreductase; HET: HCA CFN CLF PGE PG4 P6G 1PE; 2.10A {Azotobacter vinelandii} SCOP: c.37.1.10 PDB: 1g1m_A 1g5p_A 1m1y_E* 1m34_E* 1n2c_E* 1nip_A* 1fp6_A* 2afi_E* 2afk_E* 2nip_A 1de0_A 1xcp_A* 1xdb_A 1xd8_A 1xd9_A* 1g20_E* 1g21_E* 2c8v_A* 1rw4_A
Probab=94.36 E-value=0.024 Score=49.17 Aligned_cols=23 Identities=22% Similarity=0.239 Sum_probs=19.8
Q ss_pred cEEEEEEcCCCCChhHHHHHHhc
Q 047336 182 LSVVAILDSIGLDKTAFTAEAYN 204 (290)
Q Consensus 182 ~~Vi~IvGmgGiGKTTLa~~vy~ 204 (290)
.++|+|.|-||+||||+|-.+-.
T Consensus 2 MkvIavs~KGGvGKTT~a~nLA~ 24 (289)
T 2afh_E 2 MRQCAIYGKGGIGKSTTTQNLVA 24 (289)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHH
T ss_pred ceEEEEeCCCcCcHHHHHHHHHH
Confidence 47899999999999999987754
No 311
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=94.34 E-value=0.022 Score=44.81 Aligned_cols=24 Identities=21% Similarity=0.264 Sum_probs=20.5
Q ss_pred cEEEEEEcCCCCChhHHHHHHhcc
Q 047336 182 LSVVAILDSIGLDKTAFTAEAYNS 205 (290)
Q Consensus 182 ~~Vi~IvGmgGiGKTTLa~~vy~d 205 (290)
..-|.|+|.+|+|||||...+.+.
T Consensus 7 ~~~i~v~G~~~~GKSsli~~l~~~ 30 (177)
T 1wms_A 7 LFKVILLGDGGVGKSSLMNRYVTN 30 (177)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHS
T ss_pred eeEEEEECCCCCCHHHHHHHHHcC
Confidence 456889999999999999988653
No 312
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=94.33 E-value=0.016 Score=47.30 Aligned_cols=25 Identities=16% Similarity=-0.029 Sum_probs=21.7
Q ss_pred CcEEEEEEcCCCCChhHHHHHHhcc
Q 047336 181 QLSVVAILDSIGLDKTAFTAEAYNS 205 (290)
Q Consensus 181 ~~~Vi~IvGmgGiGKTTLa~~vy~d 205 (290)
.-..|+|+|..|+|||||.+.+...
T Consensus 25 ~~~~v~lvG~~g~GKSTLl~~l~g~ 49 (210)
T 1pui_A 25 TGIEVAFAGRSNAGKSSALNTLTNQ 49 (210)
T ss_dssp CSEEEEEEECTTSSHHHHHTTTCCC
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCC
Confidence 3568999999999999999988764
No 313
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=94.33 E-value=0.026 Score=50.12 Aligned_cols=23 Identities=22% Similarity=0.192 Sum_probs=20.5
Q ss_pred cEEEEEEcCCCCChhHHHHHHhc
Q 047336 182 LSVVAILDSIGLDKTAFTAEAYN 204 (290)
Q Consensus 182 ~~Vi~IvGmgGiGKTTLa~~vy~ 204 (290)
..+|.|+|+.|+||||||..+..
T Consensus 3 ~~~i~i~GptgsGKt~la~~La~ 25 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLAK 25 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred CcEEEEECCCcCCHHHHHHHHHH
Confidence 46899999999999999998865
No 314
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=94.32 E-value=0.022 Score=51.56 Aligned_cols=23 Identities=17% Similarity=0.150 Sum_probs=20.8
Q ss_pred cEEEEEEcCCCCChhHHHHHHhc
Q 047336 182 LSVVAILDSIGLDKTAFTAEAYN 204 (290)
Q Consensus 182 ~~Vi~IvGmgGiGKTTLa~~vy~ 204 (290)
=.+++|+|+.|+|||||.+.+..
T Consensus 30 Ge~~~llGpsGsGKSTLLr~iaG 52 (359)
T 3fvq_A 30 GEILFIIGASGCGKTTLLRCLAG 52 (359)
T ss_dssp TCEEEEEESTTSSHHHHHHHHHT
T ss_pred CCEEEEECCCCchHHHHHHHHhc
Confidence 45899999999999999999876
No 315
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=94.32 E-value=0.023 Score=44.18 Aligned_cols=23 Identities=9% Similarity=0.117 Sum_probs=19.7
Q ss_pred cEEEEEEcCCCCChhHHHHHHhc
Q 047336 182 LSVVAILDSIGLDKTAFTAEAYN 204 (290)
Q Consensus 182 ~~Vi~IvGmgGiGKTTLa~~vy~ 204 (290)
.--|.|+|..|+|||||...+.+
T Consensus 6 ~~~i~v~G~~~~GKssli~~l~~ 28 (170)
T 1r2q_A 6 QFKLVLLGESAVGKSSLVLRFVK 28 (170)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEEECCCCCCHHHHHHHHHc
Confidence 34678999999999999988875
No 316
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=94.31 E-value=0.023 Score=44.33 Aligned_cols=24 Identities=8% Similarity=0.264 Sum_probs=20.2
Q ss_pred cEEEEEEcCCCCChhHHHHHHhcc
Q 047336 182 LSVVAILDSIGLDKTAFTAEAYNS 205 (290)
Q Consensus 182 ~~Vi~IvGmgGiGKTTLa~~vy~d 205 (290)
.--|.|+|..|+|||||...+.+.
T Consensus 3 ~~~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1g16_A 3 IMKILLIGDSGVGKSCLLVRFVED 26 (170)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHC
T ss_pred ceEEEEECcCCCCHHHHHHHHHhC
Confidence 345789999999999999888653
No 317
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=94.30 E-value=0.025 Score=44.57 Aligned_cols=24 Identities=17% Similarity=0.069 Sum_probs=20.3
Q ss_pred cEEEEEEcCCCCChhHHHHHHhcc
Q 047336 182 LSVVAILDSIGLDKTAFTAEAYNS 205 (290)
Q Consensus 182 ~~Vi~IvGmgGiGKTTLa~~vy~d 205 (290)
.--|.|+|.+|+|||||...+.+.
T Consensus 6 ~~ki~v~G~~~~GKssl~~~l~~~ 29 (178)
T 2hxs_A 6 QLKIVVLGDGASGKTSLTTCFAQE 29 (178)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHGG
T ss_pred eEEEEEECcCCCCHHHHHHHHHhC
Confidence 456789999999999999988653
No 318
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=94.30 E-value=0.023 Score=44.64 Aligned_cols=26 Identities=12% Similarity=0.217 Sum_probs=21.8
Q ss_pred CcEEEEEEcCCCCChhHHHHHHhccc
Q 047336 181 QLSVVAILDSIGLDKTAFTAEAYNSS 206 (290)
Q Consensus 181 ~~~Vi~IvGmgGiGKTTLa~~vy~d~ 206 (290)
...-|.|+|..|+|||||...+.+..
T Consensus 14 ~~~~i~v~G~~~~GKSsli~~l~~~~ 39 (179)
T 1z0f_A 14 YIFKYIIIGDMGVGKSCLLHQFTEKK 39 (179)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred cceEEEEECCCCCCHHHHHHHHHcCC
Confidence 35678899999999999999887643
No 319
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=94.29 E-value=0.022 Score=44.30 Aligned_cols=20 Identities=10% Similarity=-0.022 Sum_probs=18.1
Q ss_pred EEEEcCCCCChhHHHHHHhc
Q 047336 185 VAILDSIGLDKTAFTAEAYN 204 (290)
Q Consensus 185 i~IvGmgGiGKTTLa~~vy~ 204 (290)
|.|+|.+|+|||||...+.+
T Consensus 3 i~~~G~~~~GKssl~~~l~~ 22 (164)
T 1r8s_A 3 ILMVGLDAAGKTTILYKLKL 22 (164)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHc
Confidence 78999999999999998865
No 320
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=94.27 E-value=0.024 Score=45.19 Aligned_cols=22 Identities=5% Similarity=0.075 Sum_probs=19.4
Q ss_pred EEEEEcCCCCChhHHHHHHhcc
Q 047336 184 VVAILDSIGLDKTAFTAEAYNS 205 (290)
Q Consensus 184 Vi~IvGmgGiGKTTLa~~vy~d 205 (290)
-|.|+|.+|+|||||...+.+.
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~ 24 (190)
T 2cxx_A 3 TIIFAGRSNVGKSTLIYRLTGK 24 (190)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhCc
Confidence 4789999999999999988764
No 321
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=94.26 E-value=0.024 Score=45.12 Aligned_cols=24 Identities=17% Similarity=0.295 Sum_probs=20.4
Q ss_pred EEEEEEcCCCCChhHHHHHHhccc
Q 047336 183 SVVAILDSIGLDKTAFTAEAYNSS 206 (290)
Q Consensus 183 ~Vi~IvGmgGiGKTTLa~~vy~d~ 206 (290)
--|.|+|.+|+|||||...+.+..
T Consensus 5 ~ki~v~G~~~~GKSsli~~l~~~~ 28 (189)
T 4dsu_A 5 YKLVVVGADGVGKSALTIQLIQNH 28 (189)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSS
T ss_pred EEEEEECCCCCCHHHHHHHHHhCC
Confidence 457899999999999999887643
No 322
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=94.26 E-value=0.024 Score=51.25 Aligned_cols=23 Identities=22% Similarity=0.167 Sum_probs=20.8
Q ss_pred cEEEEEEcCCCCChhHHHHHHhc
Q 047336 182 LSVVAILDSIGLDKTAFTAEAYN 204 (290)
Q Consensus 182 ~~Vi~IvGmgGiGKTTLa~~vy~ 204 (290)
=.+++|+|+.|+|||||.+.+..
T Consensus 41 Ge~~~llGpnGsGKSTLLr~iaG 63 (355)
T 1z47_A 41 GEMVGLLGPSGSGKTTILRLIAG 63 (355)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHT
T ss_pred CCEEEEECCCCCcHHHHHHHHhC
Confidence 45899999999999999999875
No 323
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=94.24 E-value=0.02 Score=46.60 Aligned_cols=33 Identities=15% Similarity=0.035 Sum_probs=23.7
Q ss_pred HHHHHhcCCCCcEEEEEEcCCCCChhHHHHHHhc
Q 047336 171 LLDLLIEGPTQLSVVAILDSIGLDKTAFTAEAYN 204 (290)
Q Consensus 171 L~~~L~~~~~~~~Vi~IvGmgGiGKTTLa~~vy~ 204 (290)
+.+.+.-.. +...|+|+|.+|+|||||.+.+.+
T Consensus 15 ~l~~~~~~~-~~~ki~lvG~~~vGKSsLi~~l~~ 47 (198)
T 1f6b_A 15 VLQFLGLYK-KTGKLVFLGLDNAGKTTLLHMLKD 47 (198)
T ss_dssp HHHHHTCTT-CCEEEEEEEETTSSHHHHHHHHSC
T ss_pred HHHHhhccC-CCcEEEEECCCCCCHHHHHHHHhc
Confidence 444443222 234578999999999999998875
No 324
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=94.22 E-value=0.024 Score=45.57 Aligned_cols=23 Identities=17% Similarity=0.180 Sum_probs=19.3
Q ss_pred cEEEEEEcCCCCChhHHHHHHhc
Q 047336 182 LSVVAILDSIGLDKTAFTAEAYN 204 (290)
Q Consensus 182 ~~Vi~IvGmgGiGKTTLa~~vy~ 204 (290)
.--|.|+|.+|+|||||+..+.+
T Consensus 20 ~~ki~ivG~~~vGKSsL~~~~~~ 42 (184)
T 3ihw_A 20 ELKVGIVGNLSSGKSALVHRYLT 42 (184)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHH
T ss_pred eeEEEEECCCCCCHHHHHHHHhc
Confidence 45678999999999999976654
No 325
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=94.21 E-value=0.034 Score=43.38 Aligned_cols=23 Identities=22% Similarity=0.039 Sum_probs=20.1
Q ss_pred cEEEEEEcCCCCChhHHHHHHhc
Q 047336 182 LSVVAILDSIGLDKTAFTAEAYN 204 (290)
Q Consensus 182 ~~Vi~IvGmgGiGKTTLa~~vy~ 204 (290)
...|.|+|.+|+|||||...+.+
T Consensus 7 ~~~i~v~G~~~~GKssl~~~l~~ 29 (171)
T 1upt_A 7 EMRILILGLDGAGKTTILYRLQV 29 (171)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHH
T ss_pred ccEEEEECCCCCCHHHHHHHHhc
Confidence 45688999999999999998865
No 326
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=94.21 E-value=0.058 Score=46.35 Aligned_cols=32 Identities=9% Similarity=0.138 Sum_probs=24.5
Q ss_pred HhcCCCCcEEEEEEcCCCCChhHHHHHHhccc
Q 047336 175 LIEGPTQLSVVAILDSIGLDKTAFTAEAYNSS 206 (290)
Q Consensus 175 L~~~~~~~~Vi~IvGmgGiGKTTLa~~vy~d~ 206 (290)
+.........|.++|.+|+|||||...+.+..
T Consensus 32 ~~~~~~~~~~I~vvG~~g~GKSSLin~l~~~~ 63 (270)
T 1h65_A 32 LKQEDVNSLTILVMGKGGVGKSSTVNSIIGER 63 (270)
T ss_dssp HHHTTCCEEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred HhhcCCCCeEEEEECCCCCCHHHHHHHHhCCC
Confidence 33333446678899999999999999887643
No 327
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=94.21 E-value=0.026 Score=45.20 Aligned_cols=21 Identities=19% Similarity=0.238 Sum_probs=19.0
Q ss_pred EEEEEEcCCCCChhHHHHHHh
Q 047336 183 SVVAILDSIGLDKTAFTAEAY 203 (290)
Q Consensus 183 ~Vi~IvGmgGiGKTTLa~~vy 203 (290)
.+.+|+|..|.|||||+..++
T Consensus 27 g~~~i~G~NGsGKStll~ai~ 47 (182)
T 3kta_A 27 GFTAIVGANGSGKSNIGDAIL 47 (182)
T ss_dssp SEEEEEECTTSSHHHHHHHHH
T ss_pred CcEEEECCCCCCHHHHHHHHH
Confidence 388999999999999999885
No 328
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=94.19 E-value=0.019 Score=49.16 Aligned_cols=25 Identities=16% Similarity=0.230 Sum_probs=22.2
Q ss_pred CcEEEEEEcCCCCChhHHHHHHhcc
Q 047336 181 QLSVVAILDSIGLDKTAFTAEAYNS 205 (290)
Q Consensus 181 ~~~Vi~IvGmgGiGKTTLa~~vy~d 205 (290)
+...|.|.|..|+||||+++.+.+.
T Consensus 23 ~~~~I~ieG~~GsGKST~~~~L~~~ 47 (263)
T 1p5z_B 23 RIKKISIEGNIAAGKSTFVNILKQL 47 (263)
T ss_dssp CCEEEEEECSTTSSHHHHHTTTGGG
T ss_pred CceEEEEECCCCCCHHHHHHHHHHh
Confidence 4679999999999999999988773
No 329
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=94.19 E-value=0.022 Score=51.45 Aligned_cols=23 Identities=22% Similarity=0.189 Sum_probs=20.6
Q ss_pred cEEEEEEcCCCCChhHHHHHHhc
Q 047336 182 LSVVAILDSIGLDKTAFTAEAYN 204 (290)
Q Consensus 182 ~~Vi~IvGmgGiGKTTLa~~vy~ 204 (290)
-..++|+|..|.|||||++.+..
T Consensus 170 g~k~~IvG~nGsGKSTLlk~L~g 192 (365)
T 1lw7_A 170 AKTVAILGGESSGKSVLVNKLAA 192 (365)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHH
T ss_pred hCeEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999998865
No 330
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=94.16 E-value=0.025 Score=45.00 Aligned_cols=25 Identities=12% Similarity=0.163 Sum_probs=21.1
Q ss_pred CcEEEEEEcCCCCChhHHHHHHhcc
Q 047336 181 QLSVVAILDSIGLDKTAFTAEAYNS 205 (290)
Q Consensus 181 ~~~Vi~IvGmgGiGKTTLa~~vy~d 205 (290)
...-|.|+|.+|+|||||.+.+.++
T Consensus 9 ~~~ki~v~G~~~~GKSsli~~l~~~ 33 (186)
T 2bme_A 9 FLFKFLVIGNAGTGKSCLLHQFIEK 33 (186)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred cceEEEEECCCCCCHHHHHHHHHcC
Confidence 3567889999999999999988654
No 331
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=94.16 E-value=0.031 Score=44.04 Aligned_cols=25 Identities=20% Similarity=0.298 Sum_probs=21.5
Q ss_pred CcEEEEEEcCCCCChhHHHHHHhcc
Q 047336 181 QLSVVAILDSIGLDKTAFTAEAYNS 205 (290)
Q Consensus 181 ~~~Vi~IvGmgGiGKTTLa~~vy~d 205 (290)
...-|.|+|..|+|||||...+.+.
T Consensus 8 ~~~~i~v~G~~~~GKssli~~l~~~ 32 (181)
T 2fn4_A 8 ETHKLVVVGGGGVGKSALTIQFIQS 32 (181)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHHHS
T ss_pred CceEEEEECCCCCCHHHHHHHHHhC
Confidence 4567899999999999999988764
No 332
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=94.15 E-value=0.03 Score=44.46 Aligned_cols=25 Identities=16% Similarity=0.300 Sum_probs=21.2
Q ss_pred CcEEEEEEcCCCCChhHHHHHHhcc
Q 047336 181 QLSVVAILDSIGLDKTAFTAEAYNS 205 (290)
Q Consensus 181 ~~~Vi~IvGmgGiGKTTLa~~vy~d 205 (290)
..--|.|+|.+|+|||||...+.+.
T Consensus 17 ~~~ki~v~G~~~~GKSsl~~~l~~~ 41 (183)
T 3kkq_A 17 PTYKLVVVGDGGVGKSALTIQFFQK 41 (183)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred CceEEEEECCCCCCHHHHHHHHHhC
Confidence 3556789999999999999988764
No 333
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=94.15 E-value=0.058 Score=46.16 Aligned_cols=37 Identities=16% Similarity=0.181 Sum_probs=26.7
Q ss_pred HHHHHHhcCCCCcEEEEEEcCCCCChhHHHHHHhccc
Q 047336 170 ELLDLLIEGPTQLSVVAILDSIGLDKTAFTAEAYNSS 206 (290)
Q Consensus 170 ~L~~~L~~~~~~~~Vi~IvGmgGiGKTTLa~~vy~d~ 206 (290)
++.+.+.....+...|+|+|..|+|||||...+....
T Consensus 24 ~~~~~~~~~~~~~~~I~lvG~~g~GKSSLin~l~~~~ 60 (262)
T 3def_A 24 EFFGKLKQKDMNSMTVLVLGKGGVGKSSTVNSLIGEQ 60 (262)
T ss_dssp HHHHHHHHTTCCEEEEEEEECTTSSHHHHHHHHHTSC
T ss_pred HHHHHHhhccCCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 3344444443456778999999999999999887643
No 334
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=94.15 E-value=0.026 Score=45.43 Aligned_cols=24 Identities=29% Similarity=0.285 Sum_probs=20.0
Q ss_pred cEEEEEEcCCCCChhHHHHHHhcc
Q 047336 182 LSVVAILDSIGLDKTAFTAEAYNS 205 (290)
Q Consensus 182 ~~Vi~IvGmgGiGKTTLa~~vy~d 205 (290)
.--|.|+|.+|+|||||+..+.++
T Consensus 21 ~~ki~vvG~~~vGKTsLi~~l~~~ 44 (187)
T 3c5c_A 21 EVNLAILGRRGAGKSALTVKFLTK 44 (187)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCcHHHHHHHHHhC
Confidence 456789999999999999877653
No 335
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=94.14 E-value=0.026 Score=44.70 Aligned_cols=24 Identities=29% Similarity=0.335 Sum_probs=20.6
Q ss_pred cEEEEEEcCCCCChhHHHHHHhcc
Q 047336 182 LSVVAILDSIGLDKTAFTAEAYNS 205 (290)
Q Consensus 182 ~~Vi~IvGmgGiGKTTLa~~vy~d 205 (290)
..-|.|+|.+|+|||||...+.++
T Consensus 18 ~~ki~v~G~~~~GKSsli~~l~~~ 41 (187)
T 2a9k_A 18 LHKVIMVGSGGVGKSALTLQFMYD 41 (187)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHhhC
Confidence 456889999999999999988754
No 336
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=94.13 E-value=0.021 Score=50.26 Aligned_cols=22 Identities=14% Similarity=0.398 Sum_probs=19.2
Q ss_pred cEEEEEEcCCCCChhHHHHHHhc
Q 047336 182 LSVVAILDSIGLDKTAFTAEAYN 204 (290)
Q Consensus 182 ~~Vi~IvGmgGiGKTTLa~~vy~ 204 (290)
+.| +|+|..|+|||||.+.++.
T Consensus 19 ~~I-~lvG~nG~GKSTLl~~L~g 40 (301)
T 2qnr_A 19 FTL-MVVGESGLGKSTLINSLFL 40 (301)
T ss_dssp EEE-EEEEETTSSHHHHHHHHHC
T ss_pred EEE-EEECCCCCCHHHHHHHHhC
Confidence 444 9999999999999999875
No 337
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=94.12 E-value=0.026 Score=51.05 Aligned_cols=23 Identities=26% Similarity=0.133 Sum_probs=20.9
Q ss_pred cEEEEEEcCCCCChhHHHHHHhc
Q 047336 182 LSVVAILDSIGLDKTAFTAEAYN 204 (290)
Q Consensus 182 ~~Vi~IvGmgGiGKTTLa~~vy~ 204 (290)
-.+++|+|+.|+|||||.+.+..
T Consensus 29 Ge~~~llGpnGsGKSTLLr~iaG 51 (359)
T 2yyz_A 29 GEFVALLGPSGCGKTTTLLMLAG 51 (359)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHT
T ss_pred CCEEEEEcCCCchHHHHHHHHHC
Confidence 45899999999999999999975
No 338
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=94.11 E-value=0.026 Score=45.63 Aligned_cols=23 Identities=17% Similarity=0.011 Sum_probs=19.6
Q ss_pred cEEEEEEcCCCCChhHHHHHHhc
Q 047336 182 LSVVAILDSIGLDKTAFTAEAYN 204 (290)
Q Consensus 182 ~~Vi~IvGmgGiGKTTLa~~vy~ 204 (290)
...|.|+|.+|+|||||.+.+.+
T Consensus 23 ~~ki~~vG~~~vGKSsli~~l~~ 45 (190)
T 1m2o_B 23 HGKLLFLGLDNAGKTTLLHMLKN 45 (190)
T ss_dssp -CEEEEEESTTSSHHHHHHHHHH
T ss_pred ccEEEEECCCCCCHHHHHHHHhc
Confidence 34678999999999999998876
No 339
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=94.10 E-value=0.027 Score=44.64 Aligned_cols=23 Identities=9% Similarity=0.024 Sum_probs=19.5
Q ss_pred cEEEEEEcCCCCChhHHHHHHhc
Q 047336 182 LSVVAILDSIGLDKTAFTAEAYN 204 (290)
Q Consensus 182 ~~Vi~IvGmgGiGKTTLa~~vy~ 204 (290)
.--|.|+|.+|+|||||...+.+
T Consensus 5 ~~~i~~~G~~~~GKssl~~~l~~ 27 (186)
T 1mh1_A 5 AIKCVVVGDGAVGKTCLLISYTT 27 (186)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEEEECCCCCCHHHHHHHHHc
Confidence 34578999999999999988765
No 340
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=94.09 E-value=0.026 Score=51.48 Aligned_cols=23 Identities=13% Similarity=0.102 Sum_probs=20.8
Q ss_pred cEEEEEEcCCCCChhHHHHHHhc
Q 047336 182 LSVVAILDSIGLDKTAFTAEAYN 204 (290)
Q Consensus 182 ~~Vi~IvGmgGiGKTTLa~~vy~ 204 (290)
=.+++|+|+.|+|||||.+.+..
T Consensus 29 Ge~~~llGpsGsGKSTLLr~iaG 51 (381)
T 3rlf_A 29 GEFVVFVGPSGCGKSTLLRMIAG 51 (381)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHT
T ss_pred CCEEEEEcCCCchHHHHHHHHHc
Confidence 45899999999999999999976
No 341
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=94.09 E-value=0.027 Score=44.33 Aligned_cols=22 Identities=14% Similarity=0.129 Sum_probs=19.4
Q ss_pred EEEEEEcCCCCChhHHHHHHhc
Q 047336 183 SVVAILDSIGLDKTAFTAEAYN 204 (290)
Q Consensus 183 ~Vi~IvGmgGiGKTTLa~~vy~ 204 (290)
.-|.|+|..|+|||||...+.+
T Consensus 15 ~~i~v~G~~~~GKssli~~l~~ 36 (179)
T 2y8e_A 15 FKLVFLGEQSVGKTSLITRFMY 36 (179)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHc
Confidence 4678999999999999998865
No 342
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=94.08 E-value=0.069 Score=42.62 Aligned_cols=24 Identities=21% Similarity=-0.011 Sum_probs=21.0
Q ss_pred CcEEEEEEcCCCCChhHHHHHHhc
Q 047336 181 QLSVVAILDSIGLDKTAFTAEAYN 204 (290)
Q Consensus 181 ~~~Vi~IvGmgGiGKTTLa~~vy~ 204 (290)
+...|.|+|..|+|||||...+.+
T Consensus 15 ~~~~i~v~G~~~~GKssl~~~l~~ 38 (187)
T 1zj6_A 15 QEHKVIIVGLDNAGKTTILYQFSM 38 (187)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHHT
T ss_pred CccEEEEECCCCCCHHHHHHHHhc
Confidence 356788999999999999998875
No 343
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=94.08 E-value=0.027 Score=51.05 Aligned_cols=23 Identities=17% Similarity=0.163 Sum_probs=20.9
Q ss_pred cEEEEEEcCCCCChhHHHHHHhc
Q 047336 182 LSVVAILDSIGLDKTAFTAEAYN 204 (290)
Q Consensus 182 ~~Vi~IvGmgGiGKTTLa~~vy~ 204 (290)
-.+++|+|+.|+|||||.+.+..
T Consensus 29 Ge~~~llGpnGsGKSTLLr~iaG 51 (362)
T 2it1_A 29 GEFMALLGPSGSGKSTLLYTIAG 51 (362)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHT
T ss_pred CCEEEEECCCCchHHHHHHHHhc
Confidence 46899999999999999999875
No 344
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=94.07 E-value=0.027 Score=45.24 Aligned_cols=25 Identities=16% Similarity=0.207 Sum_probs=21.1
Q ss_pred CcEEEEEEcCCCCChhHHHHHHhcc
Q 047336 181 QLSVVAILDSIGLDKTAFTAEAYNS 205 (290)
Q Consensus 181 ~~~Vi~IvGmgGiGKTTLa~~vy~d 205 (290)
...-|.|+|..|+|||||...+.+.
T Consensus 24 ~~~ki~v~G~~~~GKSsLi~~l~~~ 48 (193)
T 2oil_A 24 FVFKVVLIGESGVGKTNLLSRFTRN 48 (193)
T ss_dssp EEEEEEEESSTTSSHHHHHHHHHHS
T ss_pred cceEEEEECcCCCCHHHHHHHHhcC
Confidence 3567899999999999999988763
No 345
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=94.07 E-value=0.026 Score=45.67 Aligned_cols=25 Identities=4% Similarity=0.104 Sum_probs=20.5
Q ss_pred CcEEEEEEcCCCCChhHHHHHHhcc
Q 047336 181 QLSVVAILDSIGLDKTAFTAEAYNS 205 (290)
Q Consensus 181 ~~~Vi~IvGmgGiGKTTLa~~vy~d 205 (290)
...-|.|+|.+|+|||||.+.+.+.
T Consensus 19 ~~~ki~~vG~~~vGKTsLi~~l~~~ 43 (196)
T 3llu_A 19 SKPRILLMGLRRSGKSSIQKVVFHK 43 (196)
T ss_dssp -CCEEEEEESTTSSHHHHHHHHHSC
T ss_pred cceEEEEECCCCCCHHHHHHHHHhc
Confidence 3556789999999999999987763
No 346
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=94.07 E-value=0.028 Score=44.84 Aligned_cols=25 Identities=20% Similarity=0.159 Sum_probs=21.1
Q ss_pred CcEEEEEEcCCCCChhHHHHHHhcc
Q 047336 181 QLSVVAILDSIGLDKTAFTAEAYNS 205 (290)
Q Consensus 181 ~~~Vi~IvGmgGiGKTTLa~~vy~d 205 (290)
...-|.|+|..|+|||||+..+.+.
T Consensus 10 ~~~ki~v~G~~~~GKSsli~~l~~~ 34 (195)
T 3bc1_A 10 YLIKFLALGDSGVGKTSVLYQYTDG 34 (195)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred eeEEEEEECCCCCCHHHHHHHHhcC
Confidence 3557889999999999999988753
No 347
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=94.05 E-value=0.061 Score=49.63 Aligned_cols=41 Identities=12% Similarity=0.232 Sum_probs=28.7
Q ss_pred cccchhHHHHHHHHhcCCCCcEEEEEEcCCCCChhHHHHHHhc
Q 047336 162 VGLDDRMEELLDLLIEGPTQLSVVAILDSIGLDKTAFTAEAYN 204 (290)
Q Consensus 162 vG~e~~~~~L~~~L~~~~~~~~Vi~IvGmgGiGKTTLa~~vy~ 204 (290)
+|.......+++.+.. ..-.+++|+|+.|.|||||.+.+..
T Consensus 149 Lg~~~~~~~~L~~l~~--~~ggii~I~GpnGSGKTTlL~allg 189 (418)
T 1p9r_A 149 LGMTAHNHDNFRRLIK--RPHGIILVTGPTGSGKSTTLYAGLQ 189 (418)
T ss_dssp SCCCHHHHHHHHHHHT--SSSEEEEEECSTTSCHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHH--hcCCeEEEECCCCCCHHHHHHHHHh
Confidence 3454444444444443 3467899999999999999998866
No 348
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=94.05 E-value=0.031 Score=44.26 Aligned_cols=23 Identities=22% Similarity=0.238 Sum_probs=20.2
Q ss_pred cEEEEEEcCCCCChhHHHHHHhc
Q 047336 182 LSVVAILDSIGLDKTAFTAEAYN 204 (290)
Q Consensus 182 ~~Vi~IvGmgGiGKTTLa~~vy~ 204 (290)
...|.|+|.+|+|||||...+.+
T Consensus 6 ~~ki~~~G~~~~GKSsli~~l~~ 28 (181)
T 3t5g_A 6 SRKIAILGYRSVGKSSLTIQFVE 28 (181)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHH
T ss_pred eEEEEEECcCCCCHHHHHHHHHc
Confidence 45788999999999999998875
No 349
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=94.05 E-value=0.027 Score=51.16 Aligned_cols=23 Identities=17% Similarity=0.075 Sum_probs=20.7
Q ss_pred cEEEEEEcCCCCChhHHHHHHhc
Q 047336 182 LSVVAILDSIGLDKTAFTAEAYN 204 (290)
Q Consensus 182 ~~Vi~IvGmgGiGKTTLa~~vy~ 204 (290)
-.+++|+|+.|+|||||.+.+..
T Consensus 29 Ge~~~llGpnGsGKSTLLr~iaG 51 (372)
T 1g29_1 29 GEFMILLGPSGCGKTTTLRMIAG 51 (372)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHT
T ss_pred CCEEEEECCCCcHHHHHHHHHHc
Confidence 35899999999999999999875
No 350
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=94.04 E-value=0.024 Score=46.13 Aligned_cols=23 Identities=13% Similarity=0.199 Sum_probs=20.3
Q ss_pred CcEEEEEEcCCCCChhHHHHHHh
Q 047336 181 QLSVVAILDSIGLDKTAFTAEAY 203 (290)
Q Consensus 181 ~~~Vi~IvGmgGiGKTTLa~~vy 203 (290)
....|.|+|.+|+|||||.+.+.
T Consensus 22 ~~~ki~vvG~~~vGKSsLi~~l~ 44 (195)
T 3cbq_A 22 GIFKVMLVGESGVGKSTLAGTFG 44 (195)
T ss_dssp CEEEEEEECSTTSSHHHHHHHTC
T ss_pred cEEEEEEECCCCCCHHHHHHHHH
Confidence 45678999999999999999884
No 351
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=94.03 E-value=0.028 Score=45.51 Aligned_cols=25 Identities=28% Similarity=0.319 Sum_probs=21.1
Q ss_pred CcEEEEEEcCCCCChhHHHHHHhcc
Q 047336 181 QLSVVAILDSIGLDKTAFTAEAYNS 205 (290)
Q Consensus 181 ~~~Vi~IvGmgGiGKTTLa~~vy~d 205 (290)
...-|.|+|.+|+|||||...+.++
T Consensus 13 ~~~ki~v~G~~~~GKSsli~~l~~~ 37 (206)
T 2bov_A 13 ALHKVIMVGSGGVGKSALTLQFMYD 37 (206)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhC
Confidence 3567889999999999999988654
No 352
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=94.03 E-value=0.028 Score=44.41 Aligned_cols=24 Identities=8% Similarity=0.034 Sum_probs=20.1
Q ss_pred cEEEEEEcCCCCChhHHHHHHhcc
Q 047336 182 LSVVAILDSIGLDKTAFTAEAYNS 205 (290)
Q Consensus 182 ~~Vi~IvGmgGiGKTTLa~~vy~d 205 (290)
.--|.|+|.+|+|||||...+.+.
T Consensus 8 ~~ki~v~G~~~~GKssl~~~~~~~ 31 (182)
T 3bwd_D 8 FIKCVTVGDGAVGKTCLLISYTSN 31 (182)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHhcC
Confidence 345789999999999999888753
No 353
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=94.03 E-value=0.023 Score=44.97 Aligned_cols=24 Identities=8% Similarity=0.068 Sum_probs=20.0
Q ss_pred cEEEEEEcCCCCChhHHHHHHhcc
Q 047336 182 LSVVAILDSIGLDKTAFTAEAYNS 205 (290)
Q Consensus 182 ~~Vi~IvGmgGiGKTTLa~~vy~d 205 (290)
.--|.++|.+|+|||||...+.+.
T Consensus 7 ~~ki~~vG~~~vGKTsli~~l~~~ 30 (178)
T 2iwr_A 7 ELRLGVLGDARSGKSSLIHRFLTG 30 (178)
T ss_dssp EEEEEEECCGGGCHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 345789999999999999987653
No 354
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=94.02 E-value=0.041 Score=45.77 Aligned_cols=26 Identities=8% Similarity=0.156 Sum_probs=22.3
Q ss_pred CCcEEEEEEcCCCCChhHHHHHHhcc
Q 047336 180 TQLSVVAILDSIGLDKTAFTAEAYNS 205 (290)
Q Consensus 180 ~~~~Vi~IvGmgGiGKTTLa~~vy~d 205 (290)
.+...|.|+|.+|+|||||+..+.+.
T Consensus 27 ~~~~kI~vvG~~~vGKSsLin~l~~~ 52 (228)
T 2qu8_A 27 PHKKTIILSGAPNVGKSSFMNIVSRA 52 (228)
T ss_dssp TTSEEEEEECSTTSSHHHHHHHHTTT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 34678899999999999999988764
No 355
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=94.02 E-value=0.028 Score=44.38 Aligned_cols=24 Identities=13% Similarity=0.268 Sum_probs=20.4
Q ss_pred cEEEEEEcCCCCChhHHHHHHhcc
Q 047336 182 LSVVAILDSIGLDKTAFTAEAYNS 205 (290)
Q Consensus 182 ~~Vi~IvGmgGiGKTTLa~~vy~d 205 (290)
..-|.|+|.+|+|||||...+..+
T Consensus 12 ~~ki~v~G~~~~GKSsli~~l~~~ 35 (181)
T 2efe_B 12 NAKLVLLGDVGAGKSSLVLRFVKD 35 (181)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHC
T ss_pred ceEEEEECcCCCCHHHHHHHHHcC
Confidence 456889999999999999888754
No 356
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=93.99 E-value=0.035 Score=45.03 Aligned_cols=25 Identities=32% Similarity=0.359 Sum_probs=21.2
Q ss_pred CcEEEEEEcCCCCChhHHHHHHhcc
Q 047336 181 QLSVVAILDSIGLDKTAFTAEAYNS 205 (290)
Q Consensus 181 ~~~Vi~IvGmgGiGKTTLa~~vy~d 205 (290)
....|.|+|.+|+|||||...+.+.
T Consensus 7 ~~~ki~v~G~~~~GKSsli~~l~~~ 31 (207)
T 1vg8_A 7 VLLKVIILGDSGVGKTSLMNQYVNK 31 (207)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred cceEEEEECcCCCCHHHHHHHHHcC
Confidence 4567899999999999999988654
No 357
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=93.97 E-value=0.029 Score=51.02 Aligned_cols=23 Identities=17% Similarity=0.091 Sum_probs=20.9
Q ss_pred cEEEEEEcCCCCChhHHHHHHhc
Q 047336 182 LSVVAILDSIGLDKTAFTAEAYN 204 (290)
Q Consensus 182 ~~Vi~IvGmgGiGKTTLa~~vy~ 204 (290)
=.+++|+|+.|+|||||.+.+..
T Consensus 37 Ge~~~llGpnGsGKSTLLr~iaG 59 (372)
T 1v43_A 37 GEFLVLLGPSGCGKTTTLRMIAG 59 (372)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHT
T ss_pred CCEEEEECCCCChHHHHHHHHHc
Confidence 46899999999999999999875
No 358
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=93.97 E-value=0.024 Score=46.82 Aligned_cols=22 Identities=9% Similarity=0.080 Sum_probs=19.7
Q ss_pred EEEEEEcCCCCChhHHHHHHhc
Q 047336 183 SVVAILDSIGLDKTAFTAEAYN 204 (290)
Q Consensus 183 ~Vi~IvGmgGiGKTTLa~~vy~ 204 (290)
.+|+|.|+.|+||||+++.+-.
T Consensus 4 ~~i~i~G~~gsGkst~~~~l~~ 25 (219)
T 2h92_A 4 INIALDGPAAAGKSTIAKRVAS 25 (219)
T ss_dssp CCEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4789999999999999998865
No 359
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=93.94 E-value=0.037 Score=44.49 Aligned_cols=27 Identities=11% Similarity=-0.022 Sum_probs=22.4
Q ss_pred CCcEEEEEEcCCCCChhHHHHHHhccc
Q 047336 180 TQLSVVAILDSIGLDKTAFTAEAYNSS 206 (290)
Q Consensus 180 ~~~~Vi~IvGmgGiGKTTLa~~vy~d~ 206 (290)
.....|.|+|..|+|||||...+.+..
T Consensus 15 ~~~~ki~v~G~~~~GKSsl~~~l~~~~ 41 (199)
T 4bas_A 15 KTKLQVVMCGLDNSGKTTIINQVKPAQ 41 (199)
T ss_dssp -CEEEEEEECCTTSCHHHHHHHHSCCC
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 446788999999999999999987643
No 360
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=93.94 E-value=0.03 Score=44.15 Aligned_cols=24 Identities=17% Similarity=0.203 Sum_probs=20.4
Q ss_pred cEEEEEEcCCCCChhHHHHHHhcc
Q 047336 182 LSVVAILDSIGLDKTAFTAEAYNS 205 (290)
Q Consensus 182 ~~Vi~IvGmgGiGKTTLa~~vy~d 205 (290)
.--|.|+|..|+|||||...+.+.
T Consensus 10 ~~~i~v~G~~~~GKssli~~l~~~ 33 (180)
T 2g6b_A 10 AFKVMLVGDSGVGKTCLLVRFKDG 33 (180)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHHhC
Confidence 456789999999999999988653
No 361
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=93.91 E-value=0.033 Score=45.17 Aligned_cols=24 Identities=17% Similarity=0.243 Sum_probs=20.8
Q ss_pred cEEEEEEcCCCCChhHHHHHHhcc
Q 047336 182 LSVVAILDSIGLDKTAFTAEAYNS 205 (290)
Q Consensus 182 ~~Vi~IvGmgGiGKTTLa~~vy~d 205 (290)
..-|.|+|.+|+|||||+..+.+.
T Consensus 8 ~~ki~v~G~~~~GKSsli~~l~~~ 31 (203)
T 1zbd_A 8 MFKILIIGNSSVGKTSFLFRYADD 31 (203)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHTC
T ss_pred eeEEEEECCCCCCHHHHHHHHhcC
Confidence 456899999999999999988764
No 362
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=93.91 E-value=0.055 Score=45.64 Aligned_cols=24 Identities=13% Similarity=-0.035 Sum_probs=18.4
Q ss_pred cEEEEEEcCCCCChhHHHHHHhcc
Q 047336 182 LSVVAILDSIGLDKTAFTAEAYNS 205 (290)
Q Consensus 182 ~~Vi~IvGmgGiGKTTLa~~vy~d 205 (290)
-..|.|-|+.|+||||+++.+.+.
T Consensus 25 g~~I~~eG~~GsGKsT~~~~l~~~ 48 (227)
T 3v9p_A 25 GKFITFEGIDGAGKTTHLQWFCDR 48 (227)
T ss_dssp CCEEEEECCC---CHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 458899999999999999999883
No 363
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=93.89 E-value=0.03 Score=45.15 Aligned_cols=25 Identities=16% Similarity=0.263 Sum_probs=21.0
Q ss_pred CcEEEEEEcCCCCChhHHHHHHhcc
Q 047336 181 QLSVVAILDSIGLDKTAFTAEAYNS 205 (290)
Q Consensus 181 ~~~Vi~IvGmgGiGKTTLa~~vy~d 205 (290)
..--|.|+|..|+|||||...+.+.
T Consensus 22 ~~~ki~vvG~~~~GKSsli~~l~~~ 46 (192)
T 2fg5_A 22 RELKVCLLGDTGVGKSSIVCRFVQD 46 (192)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHHC
T ss_pred CceEEEEECcCCCCHHHHHHHHhcC
Confidence 3456889999999999999988654
No 364
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=93.89 E-value=0.031 Score=45.17 Aligned_cols=24 Identities=21% Similarity=0.282 Sum_probs=20.6
Q ss_pred cEEEEEEcCCCCChhHHHHHHhcc
Q 047336 182 LSVVAILDSIGLDKTAFTAEAYNS 205 (290)
Q Consensus 182 ~~Vi~IvGmgGiGKTTLa~~vy~d 205 (290)
..-|.|+|.+|+|||||+..+.+.
T Consensus 28 ~~ki~v~G~~~vGKSsli~~l~~~ 51 (196)
T 2atv_A 28 EVKLAIFGRAGVGKSALVVRFLTK 51 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 456789999999999999988764
No 365
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=93.85 E-value=0.029 Score=50.50 Aligned_cols=24 Identities=17% Similarity=0.246 Sum_probs=21.8
Q ss_pred cEEEEEEcCCCCChhHHHHHHhcc
Q 047336 182 LSVVAILDSIGLDKTAFTAEAYNS 205 (290)
Q Consensus 182 ~~Vi~IvGmgGiGKTTLa~~vy~d 205 (290)
=.+++|+|..|+|||||.+.+.+.
T Consensus 71 Gq~~gIiG~nGaGKTTLl~~I~g~ 94 (347)
T 2obl_A 71 GQRIGIFAGSGVGKSTLLGMICNG 94 (347)
T ss_dssp TCEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 458999999999999999999884
No 366
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=93.85 E-value=0.036 Score=48.70 Aligned_cols=25 Identities=12% Similarity=0.195 Sum_probs=21.8
Q ss_pred CcEEEEEEcCCCCChhHHHHHHhcc
Q 047336 181 QLSVVAILDSIGLDKTAFTAEAYNS 205 (290)
Q Consensus 181 ~~~Vi~IvGmgGiGKTTLa~~vy~d 205 (290)
+...|+|+|.+|+|||||...+...
T Consensus 7 r~~~VaIvG~~nvGKSTLln~L~g~ 31 (301)
T 1ega_A 7 YCGFIAIVGRPNVGKSTLLNKLLGQ 31 (301)
T ss_dssp EEEEEEEECSSSSSHHHHHHHHHTC
T ss_pred cCCEEEEECCCCCCHHHHHHHHHCC
Confidence 4568999999999999999988764
No 367
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=93.84 E-value=0.055 Score=43.21 Aligned_cols=34 Identities=21% Similarity=-0.022 Sum_probs=24.6
Q ss_pred HHHHHhcCC-CCcEEEEEEcCCCCChhHHHHHHhc
Q 047336 171 LLDLLIEGP-TQLSVVAILDSIGLDKTAFTAEAYN 204 (290)
Q Consensus 171 L~~~L~~~~-~~~~Vi~IvGmgGiGKTTLa~~vy~ 204 (290)
+.+||.--. .+..-|.|+|.+|+|||||...+.+
T Consensus 10 ~~~~l~~f~~~~~~~i~v~G~~~~GKssli~~l~~ 44 (189)
T 2x77_A 10 LKQTLGLLPADRKIRVLMLGLDNAGKTSILYRLHL 44 (189)
T ss_dssp HHHHHHTSCTTSCEEEEEEEETTSSHHHHHHHTCC
T ss_pred HHHHhhhccCCCceEEEEECCCCCCHHHHHHHHHc
Confidence 455443212 3456689999999999999999864
No 368
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=93.83 E-value=0.032 Score=44.73 Aligned_cols=24 Identities=8% Similarity=0.088 Sum_probs=20.9
Q ss_pred cEEEEEEcCCCCChhHHHHHHhcc
Q 047336 182 LSVVAILDSIGLDKTAFTAEAYNS 205 (290)
Q Consensus 182 ~~Vi~IvGmgGiGKTTLa~~vy~d 205 (290)
.--|.|+|..|+|||||...+.+.
T Consensus 7 ~~ki~v~G~~~~GKSsli~~l~~~ 30 (208)
T 3clv_A 7 SYKTVLLGESSVGKSSIVLRLTKD 30 (208)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 456889999999999999988774
No 369
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=93.82 E-value=0.033 Score=50.55 Aligned_cols=24 Identities=13% Similarity=0.288 Sum_probs=21.1
Q ss_pred CcEEEEEEcCCCCChhHHHHHHhc
Q 047336 181 QLSVVAILDSIGLDKTAFTAEAYN 204 (290)
Q Consensus 181 ~~~Vi~IvGmgGiGKTTLa~~vy~ 204 (290)
.-.+++|+|+.|+|||||++.+..
T Consensus 135 ~g~~i~ivG~~GsGKTTll~~l~~ 158 (372)
T 2ewv_A 135 KMGLILVTGPTGSGKSTTIASMID 158 (372)
T ss_dssp SSEEEEEECSSSSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHh
Confidence 356899999999999999998865
No 370
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=93.82 E-value=0.035 Score=49.18 Aligned_cols=24 Identities=17% Similarity=0.174 Sum_probs=21.3
Q ss_pred CcEEEEEEcCCCCChhHHHHHHhc
Q 047336 181 QLSVVAILDSIGLDKTAFTAEAYN 204 (290)
Q Consensus 181 ~~~Vi~IvGmgGiGKTTLa~~vy~ 204 (290)
...+|.|+|+.|+||||||..+..
T Consensus 9 ~~~~i~i~GptgsGKt~la~~La~ 32 (316)
T 3foz_A 9 LPKAIFLMGPTASGKTALAIELRK 32 (316)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCcEEEEECCCccCHHHHHHHHHH
Confidence 357899999999999999998865
No 371
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=93.81 E-value=0.032 Score=44.20 Aligned_cols=24 Identities=21% Similarity=0.040 Sum_probs=21.0
Q ss_pred CcEEEEEEcCCCCChhHHHHHHhc
Q 047336 181 QLSVVAILDSIGLDKTAFTAEAYN 204 (290)
Q Consensus 181 ~~~Vi~IvGmgGiGKTTLa~~vy~ 204 (290)
+...|.|+|..|+|||||...+.+
T Consensus 17 ~~~~i~v~G~~~~GKssli~~l~~ 40 (183)
T 1moz_A 17 KELRILILGLDGAGKTTILYRLQI 40 (183)
T ss_dssp SCEEEEEEEETTSSHHHHHHHTCC
T ss_pred CccEEEEECCCCCCHHHHHHHHhc
Confidence 466788999999999999999875
No 372
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=93.80 E-value=0.033 Score=44.68 Aligned_cols=26 Identities=12% Similarity=0.208 Sum_probs=21.8
Q ss_pred CcEEEEEEcCCCCChhHHHHHHhccc
Q 047336 181 QLSVVAILDSIGLDKTAFTAEAYNSS 206 (290)
Q Consensus 181 ~~~Vi~IvGmgGiGKTTLa~~vy~d~ 206 (290)
...-|.|+|..|+|||||...+.++.
T Consensus 15 ~~~ki~v~G~~~~GKSsli~~l~~~~ 40 (196)
T 3tkl_A 15 YLFKLLLIGDSGVGKSCLLLRFADDT 40 (196)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred cceEEEEECcCCCCHHHHHHHHHcCC
Confidence 35678999999999999999887643
No 373
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=93.78 E-value=0.039 Score=47.45 Aligned_cols=24 Identities=21% Similarity=0.213 Sum_probs=21.1
Q ss_pred cEEEEEEcCCCCChhHHHHHHhcc
Q 047336 182 LSVVAILDSIGLDKTAFTAEAYNS 205 (290)
Q Consensus 182 ~~Vi~IvGmgGiGKTTLa~~vy~d 205 (290)
...|+++|.+|+|||||...+...
T Consensus 3 ~~~i~lvG~~g~GKTTL~n~l~g~ 26 (271)
T 3k53_A 3 LKTVALVGNPNVGKTTIFNALTGL 26 (271)
T ss_dssp CEEEEEEECSSSSHHHHHHHHHTT
T ss_pred eeEEEEECCCCCCHHHHHHHHhCC
Confidence 467899999999999999988764
No 374
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=93.77 E-value=0.046 Score=43.49 Aligned_cols=26 Identities=12% Similarity=-0.005 Sum_probs=22.0
Q ss_pred CcEEEEEEcCCCCChhHHHHHHhccc
Q 047336 181 QLSVVAILDSIGLDKTAFTAEAYNSS 206 (290)
Q Consensus 181 ~~~Vi~IvGmgGiGKTTLa~~vy~d~ 206 (290)
+...|.|+|.+|+|||||...+.+..
T Consensus 17 ~~~~i~v~G~~~~GKssl~~~l~~~~ 42 (186)
T 1ksh_A 17 RELRLLMLGLDNAGKTTILKKFNGED 42 (186)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHTTCC
T ss_pred CeeEEEEECCCCCCHHHHHHHHhcCC
Confidence 45678899999999999999987643
No 375
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=93.76 E-value=0.034 Score=44.97 Aligned_cols=25 Identities=8% Similarity=0.056 Sum_probs=20.1
Q ss_pred CcEEEEEEcCCCCChhHHHHHHhcc
Q 047336 181 QLSVVAILDSIGLDKTAFTAEAYNS 205 (290)
Q Consensus 181 ~~~Vi~IvGmgGiGKTTLa~~vy~d 205 (290)
...-|.|+|.+|+|||||...+.+.
T Consensus 19 ~~~ki~~~G~~~~GKssl~~~l~~~ 43 (201)
T 2q3h_A 19 RGVKCVLVGDGAVGKTSLVVSYTTN 43 (201)
T ss_dssp -CEEEEEECSTTSSHHHHHHHHHC-
T ss_pred cceEEEEECCCCCCHHHHHHHHHhC
Confidence 3556789999999999999888754
No 376
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=93.75 E-value=0.064 Score=46.37 Aligned_cols=36 Identities=8% Similarity=0.041 Sum_probs=27.5
Q ss_pred HHHHHHHhcCCCCcEEEEEEcCCCCChhHHHHHHhc
Q 047336 169 EELLDLLIEGPTQLSVVAILDSIGLDKTAFTAEAYN 204 (290)
Q Consensus 169 ~~L~~~L~~~~~~~~Vi~IvGmgGiGKTTLa~~vy~ 204 (290)
.-+..||....++..-|-++|++|.|||+||..+-+
T Consensus 91 ~~l~~~l~~~~~~~n~~~l~GppgtGKt~~a~ala~ 126 (267)
T 1u0j_A 91 SVFLGWATKKFGKRNTIWLFGPATTGKTNIAEAIAH 126 (267)
T ss_dssp HHHHHHHTTCSTTCCEEEEECSTTSSHHHHHHHHHH
T ss_pred HHHHHHHhCCCCCCcEEEEECCCCCCHHHHHHHHHh
Confidence 345566665434456789999999999999998876
No 377
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=93.74 E-value=0.033 Score=45.25 Aligned_cols=25 Identities=20% Similarity=0.202 Sum_probs=21.4
Q ss_pred CcEEEEEEcCCCCChhHHHHHHhcc
Q 047336 181 QLSVVAILDSIGLDKTAFTAEAYNS 205 (290)
Q Consensus 181 ~~~Vi~IvGmgGiGKTTLa~~vy~d 205 (290)
...-|.|+|.+|+|||||+..+.+.
T Consensus 23 ~~~ki~vvG~~~~GKSsli~~l~~~ 47 (201)
T 3oes_A 23 RYRKVVILGYRCVGKTSLAHQFVEG 47 (201)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred CcEEEEEECCCCcCHHHHHHHHHhC
Confidence 3567889999999999999988764
No 378
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=93.73 E-value=0.034 Score=44.98 Aligned_cols=25 Identities=8% Similarity=-0.058 Sum_probs=21.1
Q ss_pred CcEEEEEEcCCCCChhHHHHHHhcc
Q 047336 181 QLSVVAILDSIGLDKTAFTAEAYNS 205 (290)
Q Consensus 181 ~~~Vi~IvGmgGiGKTTLa~~vy~d 205 (290)
+..-|.|+|.+|+|||||...+.+.
T Consensus 28 ~~~ki~v~G~~~vGKSsLi~~l~~~ 52 (192)
T 2b6h_A 28 KQMRILMVGLDAAGKTTILYKLKLG 52 (192)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHCSS
T ss_pred CccEEEEECCCCCCHHHHHHHHHhC
Confidence 3556899999999999999998653
No 379
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=93.71 E-value=0.023 Score=51.12 Aligned_cols=23 Identities=26% Similarity=0.192 Sum_probs=20.9
Q ss_pred cEEEEEEcCCCCChhHHHHHHhc
Q 047336 182 LSVVAILDSIGLDKTAFTAEAYN 204 (290)
Q Consensus 182 ~~Vi~IvGmgGiGKTTLa~~vy~ 204 (290)
=.+++|+|+.|+|||||.+.+..
T Consensus 26 Ge~~~llGpnGsGKSTLLr~iaG 48 (348)
T 3d31_A 26 GEYFVILGPTGAGKTLFLELIAG 48 (348)
T ss_dssp TCEEEEECCCTHHHHHHHHHHHT
T ss_pred CCEEEEECCCCccHHHHHHHHHc
Confidence 45899999999999999999976
No 380
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=93.70 E-value=0.035 Score=44.46 Aligned_cols=24 Identities=13% Similarity=0.209 Sum_probs=20.8
Q ss_pred cEEEEEEcCCCCChhHHHHHHhcc
Q 047336 182 LSVVAILDSIGLDKTAFTAEAYNS 205 (290)
Q Consensus 182 ~~Vi~IvGmgGiGKTTLa~~vy~d 205 (290)
..-|.|+|..|+|||||...+.++
T Consensus 22 ~~ki~vvG~~~~GKSsli~~l~~~ 45 (189)
T 2gf9_A 22 MFKLLLIGNSSVGKTSFLFRYADD 45 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred eeEEEEECCCCCCHHHHHHHHHcC
Confidence 567899999999999999988654
No 381
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=93.70 E-value=0.035 Score=44.53 Aligned_cols=24 Identities=13% Similarity=0.008 Sum_probs=20.6
Q ss_pred cEEEEEEcCCCCChhHHHHHHhcc
Q 047336 182 LSVVAILDSIGLDKTAFTAEAYNS 205 (290)
Q Consensus 182 ~~Vi~IvGmgGiGKTTLa~~vy~d 205 (290)
..-|.|+|..|+|||||...+.+.
T Consensus 22 ~~ki~v~G~~~~GKSsli~~l~~~ 45 (188)
T 1zd9_A 22 EMELTLVGLQYSGKTTFVNVIASG 45 (188)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ccEEEEECCCCCCHHHHHHHHHcC
Confidence 456789999999999999988753
No 382
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=93.70 E-value=0.035 Score=45.47 Aligned_cols=25 Identities=12% Similarity=0.042 Sum_probs=20.1
Q ss_pred CcEEEEEEcCCCCChhHHHHHHhcc
Q 047336 181 QLSVVAILDSIGLDKTAFTAEAYNS 205 (290)
Q Consensus 181 ~~~Vi~IvGmgGiGKTTLa~~vy~d 205 (290)
....|.|+|.+|+|||||...+.+.
T Consensus 6 ~~~ki~vvG~~~~GKTsli~~l~~~ 30 (214)
T 2fh5_B 6 SQRAVLFVGLCDSGKTLLFVRLLTG 30 (214)
T ss_dssp --CEEEEECSTTSSHHHHHHHHHHS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3457889999999999999988754
No 383
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=93.69 E-value=0.12 Score=45.85 Aligned_cols=42 Identities=10% Similarity=0.058 Sum_probs=31.0
Q ss_pred EEEEEcCCCCChhHHHHHHhcccccccc--CCeeEEEECCCCCCHH
Q 047336 184 VVAILDSIGLDKTAFTAEAYNSSYVKHY--FDYLAWIPAPYQYDPD 227 (290)
Q Consensus 184 Vi~IvGmgGiGKTTLa~~vy~d~~v~~~--F~~~~wV~vs~~~~~~ 227 (290)
++-|.|.+|+|||||+-++... .... =..++||+-..+++..
T Consensus 30 iteI~G~pGsGKTtL~Lq~~~~--~~~~g~g~~vlyId~E~s~~~~ 73 (333)
T 3io5_A 30 LLILAGPSKSFKSNFGLTMVSS--YMRQYPDAVCLFYDSEFGITPA 73 (333)
T ss_dssp EEEEEESSSSSHHHHHHHHHHH--HHHHCTTCEEEEEESSCCCCHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH--HHhcCCCceEEEEeccchhhHH
Confidence 7899999999999998877653 2222 1357888887777653
No 384
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=93.69 E-value=0.028 Score=50.76 Aligned_cols=23 Identities=17% Similarity=0.239 Sum_probs=20.6
Q ss_pred cEEEEEEcCCCCChhHHHHHHhc
Q 047336 182 LSVVAILDSIGLDKTAFTAEAYN 204 (290)
Q Consensus 182 ~~Vi~IvGmgGiGKTTLa~~vy~ 204 (290)
-.+++|+|..|.|||||++.+..
T Consensus 175 G~~i~ivG~sGsGKSTll~~l~~ 197 (361)
T 2gza_A 175 ERVIVVAGETGSGKTTLMKALMQ 197 (361)
T ss_dssp TCCEEEEESSSSCHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHHh
Confidence 34899999999999999999876
No 385
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=93.69 E-value=0.035 Score=44.65 Aligned_cols=25 Identities=8% Similarity=0.080 Sum_probs=21.2
Q ss_pred CcEEEEEEcCCCCChhHHHHHHhcc
Q 047336 181 QLSVVAILDSIGLDKTAFTAEAYNS 205 (290)
Q Consensus 181 ~~~Vi~IvGmgGiGKTTLa~~vy~d 205 (290)
..--|.|+|.+|+|||||...+.+.
T Consensus 22 ~~~ki~~vG~~~~GKSsl~~~l~~~ 46 (194)
T 3reg_A 22 KALKIVVVGDGAVGKTCLLLAFSKG 46 (194)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred eeeEEEEECcCCCCHHHHHHHHhcC
Confidence 3456789999999999999988764
No 386
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=93.68 E-value=0.036 Score=44.56 Aligned_cols=24 Identities=17% Similarity=0.243 Sum_probs=20.4
Q ss_pred cEEEEEEcCCCCChhHHHHHHhcc
Q 047336 182 LSVVAILDSIGLDKTAFTAEAYNS 205 (290)
Q Consensus 182 ~~Vi~IvGmgGiGKTTLa~~vy~d 205 (290)
.--|.|+|..|+|||||...+.+.
T Consensus 21 ~~ki~v~G~~~~GKSsli~~l~~~ 44 (191)
T 2a5j_A 21 LFKYIIIGDTGVGKSCLLLQFTDK 44 (191)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHhcC
Confidence 456789999999999999988753
No 387
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=93.67 E-value=0.069 Score=48.16 Aligned_cols=23 Identities=17% Similarity=0.208 Sum_probs=20.3
Q ss_pred cEEEEEEcCCCCChhHHHHHHhc
Q 047336 182 LSVVAILDSIGLDKTAFTAEAYN 204 (290)
Q Consensus 182 ~~Vi~IvGmgGiGKTTLa~~vy~ 204 (290)
-.+++|+|+.|.|||||.+.+..
T Consensus 123 ~g~i~I~GptGSGKTTlL~~l~g 145 (356)
T 3jvv_A 123 RGLVLVTGPTGSGKSTTLAAMLD 145 (356)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHh
Confidence 45999999999999999998755
No 388
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=93.66 E-value=0.039 Score=51.01 Aligned_cols=24 Identities=17% Similarity=0.054 Sum_probs=21.2
Q ss_pred CcEEEEEEcCCCCChhHHHHHHhc
Q 047336 181 QLSVVAILDSIGLDKTAFTAEAYN 204 (290)
Q Consensus 181 ~~~Vi~IvGmgGiGKTTLa~~vy~ 204 (290)
...+|+|+|.+|+||||++..+..
T Consensus 97 ~~~vi~i~G~~GsGKTT~~~~LA~ 120 (425)
T 2ffh_A 97 DRNLWFLVGLQGSGKTTTAAKLAL 120 (425)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 367999999999999999988876
No 389
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=93.66 E-value=0.036 Score=44.32 Aligned_cols=24 Identities=13% Similarity=0.207 Sum_probs=20.5
Q ss_pred cEEEEEEcCCCCChhHHHHHHhcc
Q 047336 182 LSVVAILDSIGLDKTAFTAEAYNS 205 (290)
Q Consensus 182 ~~Vi~IvGmgGiGKTTLa~~vy~d 205 (290)
...|.|+|.+|+|||||...+.+.
T Consensus 15 ~~~i~v~G~~~~GKssli~~l~~~ 38 (195)
T 1x3s_A 15 TLKILIIGESGVGKSSLLLRFTDD 38 (195)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHcC
Confidence 456889999999999999988764
No 390
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=93.65 E-value=0.035 Score=45.12 Aligned_cols=25 Identities=16% Similarity=0.191 Sum_probs=20.7
Q ss_pred CcEEEEEEcCCCCChhHHHHHHhcc
Q 047336 181 QLSVVAILDSIGLDKTAFTAEAYNS 205 (290)
Q Consensus 181 ~~~Vi~IvGmgGiGKTTLa~~vy~d 205 (290)
...-|.|+|..|+|||||.+.+.+.
T Consensus 24 ~~~ki~v~G~~~~GKSsLi~~l~~~ 48 (200)
T 2o52_A 24 FLFKFLVIGSAGTGKSCLLHQFIEN 48 (200)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHC-
T ss_pred cceEEEEECcCCCCHHHHHHHHHhC
Confidence 4567889999999999999988753
No 391
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=93.65 E-value=0.032 Score=44.89 Aligned_cols=24 Identities=17% Similarity=0.225 Sum_probs=20.8
Q ss_pred cEEEEEEcCCCCChhHHHHHHhcc
Q 047336 182 LSVVAILDSIGLDKTAFTAEAYNS 205 (290)
Q Consensus 182 ~~Vi~IvGmgGiGKTTLa~~vy~d 205 (290)
.--|.|+|..|+|||||...+.++
T Consensus 23 ~~ki~v~G~~~~GKSsli~~l~~~ 46 (191)
T 3dz8_A 23 MFKLLIIGNSSVGKTSFLFRYADD 46 (191)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHH
T ss_pred eeEEEEECCCCcCHHHHHHHHhcC
Confidence 556789999999999999988764
No 392
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=93.62 E-value=0.035 Score=44.76 Aligned_cols=25 Identities=24% Similarity=0.278 Sum_probs=20.3
Q ss_pred cEEEEEEcCCCCChhHHHHHHhccc
Q 047336 182 LSVVAILDSIGLDKTAFTAEAYNSS 206 (290)
Q Consensus 182 ~~Vi~IvGmgGiGKTTLa~~vy~d~ 206 (290)
..-|.|+|..|+|||||...+.++.
T Consensus 26 ~~ki~vvG~~~~GKSsLi~~l~~~~ 50 (192)
T 2il1_A 26 KLQVIIIGSRGVGKTSLMERFTDDT 50 (192)
T ss_dssp EEEEEEECSTTSSHHHHHHHHCC--
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCC
Confidence 4567899999999999999987643
No 393
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=93.60 E-value=0.037 Score=44.83 Aligned_cols=25 Identities=8% Similarity=0.200 Sum_probs=21.0
Q ss_pred CcEEEEEEcCCCCChhHHHHHHhcc
Q 047336 181 QLSVVAILDSIGLDKTAFTAEAYNS 205 (290)
Q Consensus 181 ~~~Vi~IvGmgGiGKTTLa~~vy~d 205 (290)
...-|.|+|..|+|||||...+.+.
T Consensus 27 ~~~ki~v~G~~~~GKSsli~~l~~~ 51 (199)
T 2p5s_A 27 KAYKIVLAGDAAVGKSSFLMRLCKN 51 (199)
T ss_dssp -CEEEEEESSTTSSHHHHHHHHHHC
T ss_pred CCeEEEEECcCCCCHHHHHHHHHhC
Confidence 4567889999999999999988653
No 394
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=93.60 E-value=0.037 Score=44.30 Aligned_cols=25 Identities=12% Similarity=0.206 Sum_probs=21.0
Q ss_pred CcEEEEEEcCCCCChhHHHHHHhcc
Q 047336 181 QLSVVAILDSIGLDKTAFTAEAYNS 205 (290)
Q Consensus 181 ~~~Vi~IvGmgGiGKTTLa~~vy~d 205 (290)
...-|.|+|..|+|||||...+.+.
T Consensus 19 ~~~ki~v~G~~~~GKSsli~~l~~~ 43 (189)
T 1z06_A 19 RIFKIIVIGDSNVGKTCLTYRFCAG 43 (189)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred ceEEEEEECCCCCCHHHHHHHHHcC
Confidence 3567889999999999999988653
No 395
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=93.58 E-value=0.021 Score=51.55 Aligned_cols=23 Identities=26% Similarity=0.196 Sum_probs=20.8
Q ss_pred cEEEEEEcCCCCChhHHHHHHhc
Q 047336 182 LSVVAILDSIGLDKTAFTAEAYN 204 (290)
Q Consensus 182 ~~Vi~IvGmgGiGKTTLa~~vy~ 204 (290)
-.+++|+|+.|+|||||.+.+..
T Consensus 31 Ge~~~llGpnGsGKSTLLr~iaG 53 (353)
T 1oxx_K 31 GERFGILGPSGAGKTTFMRIIAG 53 (353)
T ss_dssp TCEEEEECSCHHHHHHHHHHHHT
T ss_pred CCEEEEECCCCCcHHHHHHHHhC
Confidence 45899999999999999999875
No 396
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=93.57 E-value=0.048 Score=45.81 Aligned_cols=26 Identities=12% Similarity=0.138 Sum_probs=22.4
Q ss_pred CcEEEEEEcCCCCChhHHHHHHhccc
Q 047336 181 QLSVVAILDSIGLDKTAFTAEAYNSS 206 (290)
Q Consensus 181 ~~~Vi~IvGmgGiGKTTLa~~vy~d~ 206 (290)
....|+|+|..|+|||||...+....
T Consensus 28 ~~~~i~lvG~~g~GKStlin~l~g~~ 53 (239)
T 3lxx_A 28 SQLRIVLVGKTGAGKSATGNSILGRK 53 (239)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHTSC
T ss_pred CceEEEEECCCCCCHHHHHHHHcCCC
Confidence 46778999999999999999988743
No 397
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=93.56 E-value=0.035 Score=50.73 Aligned_cols=23 Identities=17% Similarity=0.197 Sum_probs=20.8
Q ss_pred cEEEEEEcCCCCChhHHHHHHhc
Q 047336 182 LSVVAILDSIGLDKTAFTAEAYN 204 (290)
Q Consensus 182 ~~Vi~IvGmgGiGKTTLa~~vy~ 204 (290)
=.+++|+|+.|+|||||.+.+..
T Consensus 47 Ge~~~llGpsGsGKSTLLr~iaG 69 (390)
T 3gd7_A 47 GQRVGLLGRTGSGKSTLLSAFLR 69 (390)
T ss_dssp TCEEEEEESTTSSHHHHHHHHHT
T ss_pred CCEEEEECCCCChHHHHHHHHhC
Confidence 46899999999999999999875
No 398
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=93.56 E-value=0.059 Score=48.84 Aligned_cols=44 Identities=18% Similarity=0.132 Sum_probs=31.4
Q ss_pred CcEEEEEEcCCCCChhHHHHHHhccccccccCCeeEEEECCCCCCH
Q 047336 181 QLSVVAILDSIGLDKTAFTAEAYNSSYVKHYFDYLAWIPAPYQYDP 226 (290)
Q Consensus 181 ~~~Vi~IvGmgGiGKTTLa~~vy~d~~v~~~F~~~~wV~vs~~~~~ 226 (290)
.-.++-|.|.+|+||||||..+.... ...=..++|++...+++.
T Consensus 73 ~G~li~I~G~pGsGKTtlal~la~~~--~~~g~~vlyi~~E~s~~~ 116 (366)
T 1xp8_A 73 RGRITEIYGPESGGKTTLALAIVAQA--QKAGGTCAFIDAEHALDP 116 (366)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHH--HHTTCCEEEEESSCCCCH
T ss_pred CCcEEEEEcCCCCChHHHHHHHHHHH--HHCCCeEEEEECCCChhH
Confidence 35578889999999999998776532 222236788888776654
No 399
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=93.56 E-value=0.037 Score=45.33 Aligned_cols=24 Identities=17% Similarity=0.264 Sum_probs=20.5
Q ss_pred CcEEEEEEcCCCCChhHHHHHHhc
Q 047336 181 QLSVVAILDSIGLDKTAFTAEAYN 204 (290)
Q Consensus 181 ~~~Vi~IvGmgGiGKTTLa~~vy~ 204 (290)
...-|.|+|.+|+|||||++.+.+
T Consensus 25 ~~~ki~lvG~~~vGKSsLi~~l~~ 48 (201)
T 2ew1_A 25 FLFKIVLIGNAGVGKTCLVRRFTQ 48 (201)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHH
T ss_pred cceEEEEECcCCCCHHHHHHHHHh
Confidence 356788999999999999998764
No 400
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=93.56 E-value=0.057 Score=54.39 Aligned_cols=45 Identities=18% Similarity=0.307 Sum_probs=36.3
Q ss_pred cccccchhHHHHHHHHhcC-----C--CCcEEEEEEcCCCCChhHHHHHHhc
Q 047336 160 NTVGLDDRMEELLDLLIEG-----P--TQLSVVAILDSIGLDKTAFTAEAYN 204 (290)
Q Consensus 160 ~~vG~e~~~~~L~~~L~~~-----~--~~~~Vi~IvGmgGiGKTTLa~~vy~ 204 (290)
.++|.+..++.+...+... + .....+-|+|..|+|||+||+.+.+
T Consensus 559 ~viG~~~a~~~l~~~i~~~~~g~~~~~~p~~~vLl~Gp~GtGKT~lA~~la~ 610 (854)
T 1qvr_A 559 RVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAA 610 (854)
T ss_dssp HSCSCHHHHHHHHHHHHHHGGGCSCSSSCSEEEEEBSCSSSSHHHHHHHHHH
T ss_pred ccCCcHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999988887531 1 2245788999999999999999987
No 401
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=93.54 E-value=0.035 Score=44.64 Aligned_cols=23 Identities=13% Similarity=0.151 Sum_probs=20.1
Q ss_pred cEEEEEEcCCCCChhHHHHHHhc
Q 047336 182 LSVVAILDSIGLDKTAFTAEAYN 204 (290)
Q Consensus 182 ~~Vi~IvGmgGiGKTTLa~~vy~ 204 (290)
..-|.|+|.+|+|||||...+.+
T Consensus 8 ~~ki~vvG~~~~GKSsli~~l~~ 30 (199)
T 2gf0_A 8 DYRVVVFGAGGVGKSSLVLRFVK 30 (199)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHH
T ss_pred eeEEEEECCCCCcHHHHHHHHHc
Confidence 45688999999999999998865
No 402
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=93.54 E-value=0.087 Score=44.67 Aligned_cols=52 Identities=12% Similarity=0.031 Sum_probs=32.1
Q ss_pred cEEEEEEcCCCCChhHHHHHHhccccccccCCeeEEEECCCCCCHHHHHHHHH
Q 047336 182 LSVVAILDSIGLDKTAFTAEAYNSSYVKHYFDYLAWIPAPYQYDPDQILDTVT 234 (290)
Q Consensus 182 ~~Vi~IvGmgGiGKTTLa~~vy~d~~v~~~F~~~~wV~vs~~~~~~~ll~~Il 234 (290)
-..|.|.|+.|+||||+++.+.+... ...+.......-+..-...+.+++++
T Consensus 27 ~~~i~~eG~~GsGKsT~~~~l~~~l~-~~~~~~~~~~rep~~t~~g~~ir~~l 78 (236)
T 3lv8_A 27 AKFIVIEGLEGAGKSTAIQVVVETLQ-QNGIDHITRTREPGGTLLAEKLRALV 78 (236)
T ss_dssp CCEEEEEESTTSCHHHHHHHHHHHHH-HTTCCCEEEEESSCSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH-hcCCCeeeeecCCCCCHHHHHHHHHH
Confidence 46899999999999999999987332 22455344444333222233444444
No 403
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=93.53 E-value=0.036 Score=51.23 Aligned_cols=21 Identities=19% Similarity=0.395 Sum_probs=19.5
Q ss_pred EEEEEcCCCCChhHHHHHHhc
Q 047336 184 VVAILDSIGLDKTAFTAEAYN 204 (290)
Q Consensus 184 Vi~IvGmgGiGKTTLa~~vy~ 204 (290)
-++|+|..|+|||||.+.++.
T Consensus 44 ~vaLvG~nGaGKSTLln~L~G 64 (427)
T 2qag_B 44 NILCVGETGLGKSTLMDTLFN 64 (427)
T ss_dssp EEEEECSTTSSSHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 399999999999999999976
No 404
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=93.53 E-value=0.045 Score=44.87 Aligned_cols=25 Identities=12% Similarity=0.032 Sum_probs=21.1
Q ss_pred CcEEEEEEcCCCCChhHHHHHHhcc
Q 047336 181 QLSVVAILDSIGLDKTAFTAEAYNS 205 (290)
Q Consensus 181 ~~~Vi~IvGmgGiGKTTLa~~vy~d 205 (290)
...-|.|+|.+|+|||||++.+.++
T Consensus 27 ~~~ki~vvG~~~vGKSsLi~~l~~~ 51 (205)
T 1gwn_A 27 VKCKIVVVGDSQCGKTALLHVFAKD 51 (205)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred eeeEEEEECCCCCCHHHHHHHHhcC
Confidence 3566889999999999999988764
No 405
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=93.52 E-value=0.092 Score=44.14 Aligned_cols=25 Identities=12% Similarity=-0.080 Sum_probs=22.3
Q ss_pred CcEEEEEEcCCCCChhHHHHHHhcc
Q 047336 181 QLSVVAILDSIGLDKTAFTAEAYNS 205 (290)
Q Consensus 181 ~~~Vi~IvGmgGiGKTTLa~~vy~d 205 (290)
.-..|.|.|+.|+||||+++.+.+.
T Consensus 20 ~~~~i~~~G~~g~GKst~~~~l~~~ 44 (223)
T 3ld9_A 20 GSMFITFEGIDGSGKTTQSHLLAEY 44 (223)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4678999999999999999999873
No 406
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=93.49 E-value=0.097 Score=43.61 Aligned_cols=52 Identities=12% Similarity=0.012 Sum_probs=32.1
Q ss_pred EEEEEEcCCCCChhHHHHHHhccccccccCCeeEEEECCCCCCHHHHHHHHHH
Q 047336 183 SVVAILDSIGLDKTAFTAEAYNSSYVKHYFDYLAWIPAPYQYDPDQILDTVTW 235 (290)
Q Consensus 183 ~Vi~IvGmgGiGKTTLa~~vy~d~~v~~~F~~~~wV~vs~~~~~~~ll~~Il~ 235 (290)
..|.+-|..|+||||+++.+.+.... ..+.......-+..-.+.+.+++++.
T Consensus 4 ~~i~~eG~~gsGKsT~~~~l~~~l~~-~~~~~v~~~rep~~t~~g~~ir~~l~ 55 (213)
T 4tmk_A 4 KYIVIEGLEGAGKTTARNVVVETLEQ-LGIRDMVFTREPGGTQLAEKLRSLLL 55 (213)
T ss_dssp CEEEEEECTTSCHHHHHHHHHHHHHH-TTCCCEEEEESSCSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHH-cCCCcceeeeCCCCCHHHHHHHHHHh
Confidence 47889999999999999999874322 23423333333333234455555554
No 407
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=93.48 E-value=0.13 Score=42.53 Aligned_cols=23 Identities=22% Similarity=0.342 Sum_probs=20.3
Q ss_pred EEEEEEcCCCCChhHHHHHHhcc
Q 047336 183 SVVAILDSIGLDKTAFTAEAYNS 205 (290)
Q Consensus 183 ~Vi~IvGmgGiGKTTLa~~vy~d 205 (290)
..|+|-|..|+||||+++.+.+.
T Consensus 3 kFI~~EG~dGsGKsTq~~~L~~~ 25 (205)
T 4hlc_A 3 AFITFEGPEGSGKTTVINEVYHR 25 (205)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHH
T ss_pred CEEEEECCCCCcHHHHHHHHHHH
Confidence 36889999999999999999883
No 408
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=93.46 E-value=0.039 Score=44.86 Aligned_cols=24 Identities=13% Similarity=0.238 Sum_probs=20.6
Q ss_pred cEEEEEEcCCCCChhHHHHHHhcc
Q 047336 182 LSVVAILDSIGLDKTAFTAEAYNS 205 (290)
Q Consensus 182 ~~Vi~IvGmgGiGKTTLa~~vy~d 205 (290)
..-|.|+|.+|+|||||...+.+.
T Consensus 8 ~~ki~v~G~~~~GKSsli~~l~~~ 31 (206)
T 2bcg_Y 8 LFKLLLIGNSGVGKSCLLLRFSDD 31 (206)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHC
T ss_pred ceEEEEECCCCCCHHHHHHHHhcC
Confidence 457889999999999999988653
No 409
>3ea0_A ATPase, para family; alpha-beta-alpha sandwich, structural genomics, PSI-2, prote structure initiative; HET: ATP; 2.20A {Chlorobium tepidum}
Probab=93.46 E-value=0.047 Score=45.75 Aligned_cols=24 Identities=13% Similarity=0.034 Sum_probs=19.5
Q ss_pred CcEEEEEEcC-CCCChhHHHHHHhc
Q 047336 181 QLSVVAILDS-IGLDKTAFTAEAYN 204 (290)
Q Consensus 181 ~~~Vi~IvGm-gGiGKTTLa~~vy~ 204 (290)
..++|+|++. ||+||||+|-.+-.
T Consensus 3 ~~~vI~v~s~kGGvGKTt~a~~LA~ 27 (245)
T 3ea0_A 3 AKRVFGFVSAKGGDGGSCIAANFAF 27 (245)
T ss_dssp CCEEEEEEESSTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcchHHHHHHHHH
Confidence 4678999965 99999999987654
No 410
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=93.46 E-value=0.039 Score=45.43 Aligned_cols=25 Identities=16% Similarity=0.123 Sum_probs=20.6
Q ss_pred CcEEEEEEcCCCCChhHHHHHHhcc
Q 047336 181 QLSVVAILDSIGLDKTAFTAEAYNS 205 (290)
Q Consensus 181 ~~~Vi~IvGmgGiGKTTLa~~vy~d 205 (290)
..--|.|+|.+|+|||||...+.++
T Consensus 33 ~~~ki~vvG~~~vGKSsli~~l~~~ 57 (214)
T 2j1l_A 33 RSVKVVLVGDGGCGKTSLLMVFADG 57 (214)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHHC-
T ss_pred ceEEEEEECcCCCCHHHHHHHHHcC
Confidence 3456889999999999999988763
No 411
>3k9g_A PF-32 protein; ssgcid, SBRI, decode biostructures, UW, NIH, niaid, borellia burgdorferi, plasmid partition protein, iodide; 2.25A {Borrelia burgdorferi} PDB: 3k9h_A
Probab=93.45 E-value=0.043 Score=46.90 Aligned_cols=25 Identities=12% Similarity=0.139 Sum_probs=20.1
Q ss_pred CCcEEEEEEc-CCCCChhHHHHHHhc
Q 047336 180 TQLSVVAILD-SIGLDKTAFTAEAYN 204 (290)
Q Consensus 180 ~~~~Vi~IvG-mgGiGKTTLa~~vy~ 204 (290)
...++|+|++ -||+||||+|-.+-.
T Consensus 25 ~~~~vI~v~s~kGGvGKTT~a~~LA~ 50 (267)
T 3k9g_A 25 KKPKIITIASIKGGVGKSTSAIILAT 50 (267)
T ss_dssp -CCEEEEECCSSSSSCHHHHHHHHHH
T ss_pred CCCeEEEEEeCCCCchHHHHHHHHHH
Confidence 4578999975 599999999987765
No 412
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=93.44 E-value=0.043 Score=44.62 Aligned_cols=22 Identities=23% Similarity=0.211 Sum_probs=18.4
Q ss_pred EEEEEE-cCCCCChhHHHHHHhc
Q 047336 183 SVVAIL-DSIGLDKTAFTAEAYN 204 (290)
Q Consensus 183 ~Vi~Iv-GmgGiGKTTLa~~vy~ 204 (290)
++|+|+ +-||+||||+|-.+-.
T Consensus 2 ~vi~v~s~kgG~GKTt~a~~la~ 24 (206)
T 4dzz_A 2 KVISFLNPKGGSGKTTAVINIAT 24 (206)
T ss_dssp EEEEECCSSTTSSHHHHHHHHHH
T ss_pred eEEEEEeCCCCccHHHHHHHHHH
Confidence 688998 5699999999987755
No 413
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=93.43 E-value=0.036 Score=44.46 Aligned_cols=25 Identities=20% Similarity=-0.019 Sum_probs=21.3
Q ss_pred cEEEEEEcCCCCChhHHHHHHhccc
Q 047336 182 LSVVAILDSIGLDKTAFTAEAYNSS 206 (290)
Q Consensus 182 ~~Vi~IvGmgGiGKTTLa~~vy~d~ 206 (290)
...|.|+|..|+|||||...+.+..
T Consensus 21 ~~ki~v~G~~~~GKSsli~~l~~~~ 45 (190)
T 2h57_A 21 EVHVLCLGLDNSGKTTIINKLKPSN 45 (190)
T ss_dssp CEEEEEEECTTSSHHHHHHHTSCGG
T ss_pred ccEEEEECCCCCCHHHHHHHHhcCC
Confidence 4567899999999999999987654
No 414
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=93.42 E-value=0.04 Score=44.59 Aligned_cols=22 Identities=14% Similarity=0.191 Sum_probs=19.2
Q ss_pred cEEEEEEcCCCCChhHHHHHHh
Q 047336 182 LSVVAILDSIGLDKTAFTAEAY 203 (290)
Q Consensus 182 ~~Vi~IvGmgGiGKTTLa~~vy 203 (290)
..-|.|+|.+|+|||||.....
T Consensus 6 ~~kv~lvG~~~vGKSsL~~~~~ 27 (192)
T 2cjw_A 6 YYRVVLIGEQGVGKSTLANIFA 27 (192)
T ss_dssp EEEEEEECSTTSSHHHHHHHHH
T ss_pred eEEEEEECCCCCCHHHHHHHHh
Confidence 4568899999999999998775
No 415
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=93.40 E-value=0.039 Score=43.89 Aligned_cols=24 Identities=17% Similarity=-0.036 Sum_probs=20.6
Q ss_pred cEEEEEEcCCCCChhHHHHHHhcc
Q 047336 182 LSVVAILDSIGLDKTAFTAEAYNS 205 (290)
Q Consensus 182 ~~Vi~IvGmgGiGKTTLa~~vy~d 205 (290)
...|.|+|..|+|||||...+.+.
T Consensus 21 ~~~i~v~G~~~~GKSsli~~l~~~ 44 (181)
T 2h17_A 21 EHKVIIVGLDNAGKTTILYQFSMN 44 (181)
T ss_dssp CEEEEEEEETTSSHHHHHHHHHTT
T ss_pred eeEEEEECCCCCCHHHHHHHHhcC
Confidence 456789999999999999988753
No 416
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=93.40 E-value=0.04 Score=44.99 Aligned_cols=24 Identities=8% Similarity=-0.004 Sum_probs=20.5
Q ss_pred cEEEEEEcCCCCChhHHHHHHhcc
Q 047336 182 LSVVAILDSIGLDKTAFTAEAYNS 205 (290)
Q Consensus 182 ~~Vi~IvGmgGiGKTTLa~~vy~d 205 (290)
..-|.|+|.+|+|||||...+.++
T Consensus 25 ~~ki~vvG~~~~GKSsli~~l~~~ 48 (207)
T 2fv8_A 25 RKKLVVVGDGACGKTCLLIVFSKD 48 (207)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHS
T ss_pred CcEEEEECcCCCCHHHHHHHHhcC
Confidence 456889999999999999988763
No 417
>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}
Probab=93.39 E-value=0.041 Score=45.50 Aligned_cols=21 Identities=14% Similarity=0.162 Sum_probs=17.4
Q ss_pred EEEEE-cCCCCChhHHHHHHhc
Q 047336 184 VVAIL-DSIGLDKTAFTAEAYN 204 (290)
Q Consensus 184 Vi~Iv-GmgGiGKTTLa~~vy~ 204 (290)
+|+|+ +-||+||||+|..+-.
T Consensus 2 vI~v~s~KGGvGKTT~a~~LA~ 23 (209)
T 3cwq_A 2 IITVASFKGGVGKTTTAVHLSA 23 (209)
T ss_dssp EEEEEESSTTSSHHHHHHHHHH
T ss_pred EEEEEcCCCCCcHHHHHHHHHH
Confidence 67887 5699999999987765
No 418
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=93.39 E-value=0.033 Score=49.66 Aligned_cols=22 Identities=18% Similarity=0.261 Sum_probs=20.3
Q ss_pred EEEEEEcCCCCChhHHHHHHhc
Q 047336 183 SVVAILDSIGLDKTAFTAEAYN 204 (290)
Q Consensus 183 ~Vi~IvGmgGiGKTTLa~~vy~ 204 (290)
.+++|+|..|.|||||++.+..
T Consensus 172 ~~v~i~G~~GsGKTTll~~l~g 193 (330)
T 2pt7_A 172 KNVIVCGGTGSGKTTYIKSIME 193 (330)
T ss_dssp CCEEEEESTTSCHHHHHHHGGG
T ss_pred CEEEEECCCCCCHHHHHHHHhC
Confidence 4789999999999999999976
No 419
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=93.33 E-value=0.086 Score=48.78 Aligned_cols=44 Identities=25% Similarity=0.303 Sum_probs=32.9
Q ss_pred cccchhHHHHHHHHhcC---------CCCcEEEEEEcCCCCChhHHHHHHhcc
Q 047336 162 VGLDDRMEELLDLLIEG---------PTQLSVVAILDSIGLDKTAFTAEAYNS 205 (290)
Q Consensus 162 vG~e~~~~~L~~~L~~~---------~~~~~Vi~IvGmgGiGKTTLa~~vy~d 205 (290)
.|.++-.+.|.+.+... ......|+|+|.+|+|||||.+.+...
T Consensus 151 ~gv~~L~~~i~~~l~~~~~~~~~~~~~~~~~kvaivG~~gvGKSTLln~l~g~ 203 (439)
T 1mky_A 151 INLDTMLETIIKKLEEKGLDLESKPEITDAIKVAIVGRPNVGKSTLFNAILNK 203 (439)
T ss_dssp BSHHHHHHHHHHHHHHTTCCSSSCCCCCSCEEEEEECSTTSSHHHHHHHHHTS
T ss_pred CCHHHHHHHHHHhcccccccchhccccccCceEEEECCCCCCHHHHHHHHhCC
Confidence 45667777777766521 124568999999999999999998764
No 420
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=93.32 E-value=0.085 Score=49.09 Aligned_cols=21 Identities=24% Similarity=0.167 Sum_probs=19.5
Q ss_pred EEEEEcCCCCChhHHHHHHhc
Q 047336 184 VVAILDSIGLDKTAFTAEAYN 204 (290)
Q Consensus 184 Vi~IvGmgGiGKTTLa~~vy~ 204 (290)
.+-|.|.+|+||||++..+..
T Consensus 47 ~~li~G~aGTGKT~ll~~~~~ 67 (459)
T 3upu_A 47 HVTINGPAGTGATTLTKFIIE 67 (459)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHH
Confidence 888999999999999998877
No 421
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=93.29 E-value=0.044 Score=44.58 Aligned_cols=25 Identities=8% Similarity=0.256 Sum_probs=20.8
Q ss_pred CcEEEEEEcCCCCChhHHHHHHhcc
Q 047336 181 QLSVVAILDSIGLDKTAFTAEAYNS 205 (290)
Q Consensus 181 ~~~Vi~IvGmgGiGKTTLa~~vy~d 205 (290)
...-|.|+|.+|+|||||...+...
T Consensus 19 ~~~~i~v~G~~~~GKSsli~~l~~~ 43 (213)
T 3cph_A 19 SIMKILLIGDSGVGKSCLLVRFVED 43 (213)
T ss_dssp -CEEEEEECSTTSSHHHHHHHHHHC
T ss_pred cceEEEEECCCCCCHHHHHHHHHhC
Confidence 3567889999999999999988753
No 422
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=93.25 E-value=0.025 Score=56.59 Aligned_cols=48 Identities=25% Similarity=0.189 Sum_probs=37.2
Q ss_pred CCcccccchhHHHHHHHHhcC-----------CCCcEEEEEEcCCCCChhHHHHHHhcc
Q 047336 158 NRNTVGLDDRMEELLDLLIEG-----------PTQLSVVAILDSIGLDKTAFTAEAYNS 205 (290)
Q Consensus 158 ~~~~vG~e~~~~~L~~~L~~~-----------~~~~~Vi~IvGmgGiGKTTLa~~vy~d 205 (290)
-.+++|.+..++.|.+.+... -.....+.++|++|+||||||+.+.+.
T Consensus 476 ~~di~gl~~vk~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~Lakala~~ 534 (806)
T 1ypw_A 476 WEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANE 534 (806)
T ss_dssp SCSSSCCCCHHHHHHTTTTSSSSSCTTTTCCCCCCCCCCCCBCCTTSSHHHHHHHHHHH
T ss_pred ccccccchhhhhhHHHHHHhhhhchHHHHhcCCCCCceeEEECCCCCCHHHHHHHHHHH
Confidence 356889999999988876521 123456789999999999999999883
No 423
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=93.25 E-value=0.054 Score=47.69 Aligned_cols=26 Identities=15% Similarity=0.268 Sum_probs=23.0
Q ss_pred CCcEEEEEEcCCCCChhHHHHHHhcc
Q 047336 180 TQLSVVAILDSIGLDKTAFTAEAYNS 205 (290)
Q Consensus 180 ~~~~Vi~IvGmgGiGKTTLa~~vy~d 205 (290)
.....|+|+|.+|+|||||...+...
T Consensus 8 ~~~g~v~ivG~~nvGKSTLin~l~g~ 33 (308)
T 3iev_A 8 MKVGYVAIVGKPNVGKSTLLNNLLGT 33 (308)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHTS
T ss_pred CCCCEEEEECCCCCcHHHHHHHHhCC
Confidence 45789999999999999999988764
No 424
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=93.25 E-value=0.034 Score=52.03 Aligned_cols=24 Identities=17% Similarity=0.145 Sum_probs=21.2
Q ss_pred CcEEEEEEcCCCCChhHHHHHHhc
Q 047336 181 QLSVVAILDSIGLDKTAFTAEAYN 204 (290)
Q Consensus 181 ~~~Vi~IvGmgGiGKTTLa~~vy~ 204 (290)
.-.+++|+|..|+|||||++.+..
T Consensus 137 ~Ge~v~IvGpnGsGKSTLlr~L~G 160 (460)
T 2npi_A 137 EGPRVVIVGGSQTGKTSLSRTLCS 160 (460)
T ss_dssp SCCCEEEEESTTSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhC
Confidence 346899999999999999999876
No 425
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=93.23 E-value=0.043 Score=52.30 Aligned_cols=24 Identities=25% Similarity=0.317 Sum_probs=21.5
Q ss_pred cEEEEEEcCCCCChhHHHHHHhcc
Q 047336 182 LSVVAILDSIGLDKTAFTAEAYNS 205 (290)
Q Consensus 182 ~~Vi~IvGmgGiGKTTLa~~vy~d 205 (290)
=.+++|+|+.|.|||||++.++.-
T Consensus 312 Ge~~~i~G~NGsGKSTLlk~l~Gl 335 (538)
T 1yqt_A 312 GEVIGIVGPNGIGKTTFVKMLAGV 335 (538)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHTS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 358999999999999999999873
No 426
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=93.23 E-value=0.047 Score=50.05 Aligned_cols=22 Identities=18% Similarity=0.383 Sum_probs=19.7
Q ss_pred EEEEEEcCCCCChhHHHHHHhc
Q 047336 183 SVVAILDSIGLDKTAFTAEAYN 204 (290)
Q Consensus 183 ~Vi~IvGmgGiGKTTLa~~vy~ 204 (290)
.+|.|.|+.|+||||||..+..
T Consensus 3 ~~i~i~GptgsGKttla~~La~ 24 (409)
T 3eph_A 3 KVIVIAGTTGVGKSQLSIQLAQ 24 (409)
T ss_dssp EEEEEEECSSSSHHHHHHHHHH
T ss_pred cEEEEECcchhhHHHHHHHHHH
Confidence 5889999999999999988865
No 427
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=93.21 E-value=0.044 Score=52.30 Aligned_cols=22 Identities=27% Similarity=0.468 Sum_probs=20.7
Q ss_pred EEEEEEcCCCCChhHHHHHHhc
Q 047336 183 SVVAILDSIGLDKTAFTAEAYN 204 (290)
Q Consensus 183 ~Vi~IvGmgGiGKTTLa~~vy~ 204 (290)
.+++|+|+.|+|||||++.+..
T Consensus 295 ei~~i~G~nGsGKSTLl~~l~G 316 (538)
T 3ozx_A 295 EIIGILGPNGIGKTTFARILVG 316 (538)
T ss_dssp CEEEEECCTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhC
Confidence 5899999999999999999987
No 428
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=93.20 E-value=0.045 Score=44.55 Aligned_cols=26 Identities=12% Similarity=0.111 Sum_probs=21.7
Q ss_pred CCcEEEEEEcCCCCChhHHHHHHhcc
Q 047336 180 TQLSVVAILDSIGLDKTAFTAEAYNS 205 (290)
Q Consensus 180 ~~~~Vi~IvGmgGiGKTTLa~~vy~d 205 (290)
....-|.|+|.+|+|||||+..+.+.
T Consensus 27 ~~~~ki~vvG~~~vGKSsli~~l~~~ 52 (201)
T 2hup_A 27 DFLFKLVLVGDASVGKTCVVQRFKTG 52 (201)
T ss_dssp CEEEEEEEEECTTSSHHHHHHHHHHS
T ss_pred ccceEEEEECcCCCCHHHHHHHHhhC
Confidence 34567899999999999999988653
No 429
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=93.20 E-value=0.068 Score=46.89 Aligned_cols=34 Identities=18% Similarity=0.228 Sum_probs=26.6
Q ss_pred hHHHHHHHHhcCCCCcEEEEEEcCCCCChhHHHHHHhcc
Q 047336 167 RMEELLDLLIEGPTQLSVVAILDSIGLDKTAFTAEAYNS 205 (290)
Q Consensus 167 ~~~~L~~~L~~~~~~~~Vi~IvGmgGiGKTTLa~~vy~d 205 (290)
..+++..++. -.+++|+|+.|+|||||.+.+...
T Consensus 159 gv~~lf~~l~-----geiv~l~G~sG~GKSTll~~l~g~ 192 (301)
T 1u0l_A 159 GIEELKEYLK-----GKISTMAGLSGVGKSSLLNAINPG 192 (301)
T ss_dssp THHHHHHHHS-----SSEEEEECSTTSSHHHHHHHHSTT
T ss_pred CHHHHHHHhc-----CCeEEEECCCCCcHHHHHHHhccc
Confidence 3556666654 247899999999999999999763
No 430
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=93.20 E-value=0.028 Score=44.64 Aligned_cols=24 Identities=17% Similarity=0.187 Sum_probs=10.4
Q ss_pred cEEEEEEcCCCCChhHHHHHHhcc
Q 047336 182 LSVVAILDSIGLDKTAFTAEAYNS 205 (290)
Q Consensus 182 ~~Vi~IvGmgGiGKTTLa~~vy~d 205 (290)
..-|.|+|..|+|||||...+.++
T Consensus 8 ~~ki~v~G~~~~GKssl~~~l~~~ 31 (183)
T 2fu5_C 8 LFKLLLIGDSGVGKTCVLFRFSED 31 (183)
T ss_dssp EEEEEEECCCCC------------
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 456889999999999999887653
No 431
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=93.18 E-value=0.05 Score=44.57 Aligned_cols=25 Identities=24% Similarity=0.256 Sum_probs=21.2
Q ss_pred CcEEEEEEcCCCCChhHHHHHHhcc
Q 047336 181 QLSVVAILDSIGLDKTAFTAEAYNS 205 (290)
Q Consensus 181 ~~~Vi~IvGmgGiGKTTLa~~vy~d 205 (290)
..--|.|+|..|+|||||...+.+.
T Consensus 24 ~~~ki~vvG~~~~GKSsLi~~l~~~ 48 (217)
T 2f7s_A 24 YLIKLLALGDSGVGKTTFLYRYTDN 48 (217)
T ss_dssp EEEEEEEESCTTSSHHHHHHHHHCS
T ss_pred eeEEEEEECcCCCCHHHHHHHHhcC
Confidence 3556889999999999999988764
No 432
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=93.17 E-value=0.045 Score=43.97 Aligned_cols=24 Identities=13% Similarity=0.124 Sum_probs=20.6
Q ss_pred cEEEEEEcCCCCChhHHHHHHhcc
Q 047336 182 LSVVAILDSIGLDKTAFTAEAYNS 205 (290)
Q Consensus 182 ~~Vi~IvGmgGiGKTTLa~~vy~d 205 (290)
..-|.|+|..|+|||||+..+.+.
T Consensus 18 ~~ki~v~G~~~~GKssli~~l~~~ 41 (194)
T 2atx_A 18 MLKCVVVGDGAVGKTCLLMSYAND 41 (194)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHhcC
Confidence 457889999999999999888754
No 433
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=93.17 E-value=0.046 Score=44.37 Aligned_cols=24 Identities=13% Similarity=0.008 Sum_probs=20.5
Q ss_pred cEEEEEEcCCCCChhHHHHHHhcc
Q 047336 182 LSVVAILDSIGLDKTAFTAEAYNS 205 (290)
Q Consensus 182 ~~Vi~IvGmgGiGKTTLa~~vy~d 205 (290)
..-|.|+|.+|+|||||...+.++
T Consensus 25 ~~ki~vvG~~~~GKSsli~~l~~~ 48 (201)
T 2gco_A 25 RKKLVIVGDGACGKTCLLIVFSKD 48 (201)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 456889999999999999988763
No 434
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=93.15 E-value=0.046 Score=44.61 Aligned_cols=24 Identities=8% Similarity=-0.015 Sum_probs=20.2
Q ss_pred cEEEEEEcCCCCChhHHHHHHhcc
Q 047336 182 LSVVAILDSIGLDKTAFTAEAYNS 205 (290)
Q Consensus 182 ~~Vi~IvGmgGiGKTTLa~~vy~d 205 (290)
.--|.|+|.+|+|||||+..+.++
T Consensus 9 ~~ki~i~G~~~~GKTsli~~l~~~ 32 (212)
T 2j0v_A 9 FIKCVTVGDGAVGKTCMLICYTSN 32 (212)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHhcC
Confidence 456889999999999999888653
No 435
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=93.13 E-value=0.046 Score=46.23 Aligned_cols=23 Identities=13% Similarity=0.019 Sum_probs=19.9
Q ss_pred cEEEEEEcCCCCChhHHHHHHhc
Q 047336 182 LSVVAILDSIGLDKTAFTAEAYN 204 (290)
Q Consensus 182 ~~Vi~IvGmgGiGKTTLa~~vy~ 204 (290)
-..++|.|++|+||||+|+.+-+
T Consensus 8 ~~~~~~~G~pGsGKsT~a~~L~~ 30 (230)
T 3gmt_A 8 HMRLILLGAPGAGKGTQANFIKE 30 (230)
T ss_dssp -CEEEEECCTTSCHHHHHHHHHH
T ss_pred ccceeeECCCCCCHHHHHHHHHH
Confidence 45689999999999999998876
No 436
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=93.09 E-value=0.066 Score=43.66 Aligned_cols=24 Identities=8% Similarity=0.036 Sum_probs=20.1
Q ss_pred cEEEEEEcCCCCChhHHHHHHhcc
Q 047336 182 LSVVAILDSIGLDKTAFTAEAYNS 205 (290)
Q Consensus 182 ~~Vi~IvGmgGiGKTTLa~~vy~d 205 (290)
.-.|.|+|.+|+|||||...+.++
T Consensus 30 ~~ki~vvG~~~~GKSsLi~~l~~~ 53 (204)
T 4gzl_A 30 AIKCVVVGDGAVGKTCLLISYTTN 53 (204)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEEECcCCCCHHHHHHHHHhC
Confidence 456789999999999999877653
No 437
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=93.08 E-value=0.045 Score=49.43 Aligned_cols=46 Identities=11% Similarity=0.235 Sum_probs=26.0
Q ss_pred CcccccchhHHHHHHHHhcCCCCcEEEEEEcCCCCChhHHHHHHhcc
Q 047336 159 RNTVGLDDRMEELLDLLIEGPTQLSVVAILDSIGLDKTAFTAEAYNS 205 (290)
Q Consensus 159 ~~~vG~e~~~~~L~~~L~~~~~~~~Vi~IvGmgGiGKTTLa~~vy~d 205 (290)
...+|+..-....-+.....+..+ -|+|+|..|+|||||+..++..
T Consensus 15 ~~~v~~~~l~~~~~~k~~~~~~~~-~I~vvG~~g~GKSTLln~L~~~ 60 (361)
T 2qag_A 15 PGYVGFANLPNQVHRKSVKKGFEF-TLMVVGESGLGKSTLINSLFLT 60 (361)
T ss_dssp ------CCHHHHHHTHHHHHCCEE-CEEECCCTTSCHHHHHHHHTTC
T ss_pred CceEEeccchHHhCCeeecCCCCE-EEEEEcCCCCCHHHHHHHHhCC
Confidence 345666555444443322222223 3589999999999999998763
No 438
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=93.08 E-value=0.056 Score=51.32 Aligned_cols=24 Identities=13% Similarity=0.115 Sum_probs=21.2
Q ss_pred CcEEEEEEcCCCCChhHHHHHHhc
Q 047336 181 QLSVVAILDSIGLDKTAFTAEAYN 204 (290)
Q Consensus 181 ~~~Vi~IvGmgGiGKTTLa~~vy~ 204 (290)
...+|.++|++|.||||+|+.+..
T Consensus 34 ~~~lIvlvGlpGSGKSTia~~La~ 57 (520)
T 2axn_A 34 SPTVIVMVGLPARGKTYISKKLTR 57 (520)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 357899999999999999999865
No 439
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=93.05 E-value=0.051 Score=49.09 Aligned_cols=24 Identities=8% Similarity=0.160 Sum_probs=21.2
Q ss_pred EEEEEEcCCCCChhHHHHHHhccc
Q 047336 183 SVVAILDSIGLDKTAFTAEAYNSS 206 (290)
Q Consensus 183 ~Vi~IvGmgGiGKTTLa~~vy~d~ 206 (290)
.+++|+|..|+|||||.+.+....
T Consensus 216 ~~~~lvG~sG~GKSTLln~L~g~~ 239 (358)
T 2rcn_A 216 RISIFAGQSGVGKSSLLNALLGLQ 239 (358)
T ss_dssp SEEEEECCTTSSHHHHHHHHHCCS
T ss_pred CEEEEECCCCccHHHHHHHHhccc
Confidence 488999999999999999998643
No 440
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=93.03 E-value=0.05 Score=44.19 Aligned_cols=21 Identities=14% Similarity=-0.023 Sum_probs=17.1
Q ss_pred EEEEEEcCCCCChhHHHHHHh
Q 047336 183 SVVAILDSIGLDKTAFTAEAY 203 (290)
Q Consensus 183 ~Vi~IvGmgGiGKTTLa~~vy 203 (290)
.++.|+|+.|+||||++..+.
T Consensus 4 ~i~vi~G~~gsGKTT~ll~~~ 24 (184)
T 2orw_A 4 KLTVITGPMYSGKTTELLSFV 24 (184)
T ss_dssp CEEEEEESTTSSHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHH
Confidence 477899999999999984443
No 441
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=93.02 E-value=0.052 Score=47.74 Aligned_cols=31 Identities=19% Similarity=0.307 Sum_probs=24.9
Q ss_pred HHHHHHHHhcCCCCcEEEEEEcCCCCChhHHHHHHh
Q 047336 168 MEELLDLLIEGPTQLSVVAILDSIGLDKTAFTAEAY 203 (290)
Q Consensus 168 ~~~L~~~L~~~~~~~~Vi~IvGmgGiGKTTLa~~vy 203 (290)
.++|.+.+. -.+++++|+.|+|||||.+.+.
T Consensus 156 i~~L~~~l~-----G~i~~l~G~sG~GKSTLln~l~ 186 (302)
T 2yv5_A 156 IDELVDYLE-----GFICILAGPSGVGKSSILSRLT 186 (302)
T ss_dssp HHHHHHHTT-----TCEEEEECSTTSSHHHHHHHHH
T ss_pred HHHHHhhcc-----CcEEEEECCCCCCHHHHHHHHH
Confidence 456666554 2478999999999999999987
No 442
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=93.02 E-value=0.1 Score=45.05 Aligned_cols=38 Identities=13% Similarity=0.184 Sum_probs=27.9
Q ss_pred HHHHHHHhc----CCCCcEEEEEEcCCCCChhHHHHHHhccc
Q 047336 169 EELLDLLIE----GPTQLSVVAILDSIGLDKTAFTAEAYNSS 206 (290)
Q Consensus 169 ~~L~~~L~~----~~~~~~Vi~IvGmgGiGKTTLa~~vy~d~ 206 (290)
++|.+.|.. .......|+|+|.+|+|||||...+....
T Consensus 9 ~~l~~~l~~~~~~~~~~~~~i~vvG~~~~GKSSLln~l~g~~ 50 (299)
T 2aka_B 9 NRLQDAFSAIGQNADLDLPQIAVVGGQSAGKSSVLENFVGRD 50 (299)
T ss_dssp HHHHHHHTTSCCCTTCCCCEEEEEEBTTSCHHHHHHHHHTSC
T ss_pred HHHHHHHHhcCCCCCCCCCeEEEEeCCCCCHHHHHHHHHCCC
Confidence 445555543 12456789999999999999999987643
No 443
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=93.01 E-value=0.053 Score=51.74 Aligned_cols=24 Identities=17% Similarity=0.232 Sum_probs=21.8
Q ss_pred CcEEEEEEcCCCCChhHHHHHHhc
Q 047336 181 QLSVVAILDSIGLDKTAFTAEAYN 204 (290)
Q Consensus 181 ~~~Vi~IvGmgGiGKTTLa~~vy~ 204 (290)
.=.+++|+|+.|.|||||.+.+..
T Consensus 24 ~Gei~gLiGpNGaGKSTLlkiL~G 47 (538)
T 3ozx_A 24 NNTILGVLGKNGVGKTTVLKILAG 47 (538)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHTT
T ss_pred CCCEEEEECCCCCcHHHHHHHHhc
Confidence 457999999999999999999876
No 444
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=92.97 E-value=0.17 Score=47.07 Aligned_cols=53 Identities=13% Similarity=0.143 Sum_probs=35.0
Q ss_pred CCcEEEEEEcCCCCChhHHHHHHhccccccccCCeeEEEECCCCCCHHHHHHHHHH
Q 047336 180 TQLSVVAILDSIGLDKTAFTAEAYNSSYVKHYFDYLAWIPAPYQYDPDQILDTVTW 235 (290)
Q Consensus 180 ~~~~Vi~IvGmgGiGKTTLa~~vy~d~~v~~~F~~~~wV~vs~~~~~~~ll~~Il~ 235 (290)
..-.++.|.|.+|+||||||..+..+.... .=..++|++... +...+...++.
T Consensus 201 ~~G~liiI~G~pG~GKTtl~l~ia~~~~~~-~g~~Vl~~s~E~--s~~~l~~r~~~ 253 (454)
T 2r6a_A 201 QRSDLIIVAARPSVGKTAFALNIAQNVATK-TNENVAIFSLEM--SAQQLVMRMLC 253 (454)
T ss_dssp CTTCEEEEECCTTSCHHHHHHHHHHHHHHH-SSCCEEEEESSS--CHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHHHHh-CCCcEEEEECCC--CHHHHHHHHHH
Confidence 345688899999999999999887632221 112577777544 34566665553
No 445
>3q9l_A Septum site-determining protein MIND; ATPase, bacterial cell division inhibitor, MINC, MINE, cell hydrolase; HET: ATP; 2.34A {Escherichia coli} PDB: 3r9i_A* 3r9j_A*
Probab=92.97 E-value=0.059 Score=45.55 Aligned_cols=22 Identities=18% Similarity=0.270 Sum_probs=18.1
Q ss_pred EEEEEEcC-CCCChhHHHHHHhc
Q 047336 183 SVVAILDS-IGLDKTAFTAEAYN 204 (290)
Q Consensus 183 ~Vi~IvGm-gGiGKTTLa~~vy~ 204 (290)
++|+|+|. ||+||||+|-.+-.
T Consensus 3 ~vi~v~s~kgGvGKTt~a~~LA~ 25 (260)
T 3q9l_A 3 RIIVVTSGKGGVGKTTSSAAIAT 25 (260)
T ss_dssp EEEEEECSSTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCcHHHHHHHHHH
Confidence 68888765 99999999987755
No 446
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=92.96 E-value=0.035 Score=45.73 Aligned_cols=27 Identities=15% Similarity=0.042 Sum_probs=23.0
Q ss_pred CCcEEEEEEcCCCCChhHHHHHHhccc
Q 047336 180 TQLSVVAILDSIGLDKTAFTAEAYNSS 206 (290)
Q Consensus 180 ~~~~Vi~IvGmgGiGKTTLa~~vy~d~ 206 (290)
.....|.|+|..|+|||||...+.+..
T Consensus 27 ~~~~~i~v~G~~~~GKSslin~l~~~~ 53 (223)
T 4dhe_A 27 TVQPEIAFAGRSNAGKSTAINVLCNQK 53 (223)
T ss_dssp CCSCEEEEEESCHHHHHHHHHHHTTCS
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCCC
Confidence 346678999999999999999998754
No 447
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=92.96 E-value=0.036 Score=53.01 Aligned_cols=24 Identities=17% Similarity=0.025 Sum_probs=21.6
Q ss_pred CcEEEEEEcCCCCChhHHHHHHhc
Q 047336 181 QLSVVAILDSIGLDKTAFTAEAYN 204 (290)
Q Consensus 181 ~~~Vi~IvGmgGiGKTTLa~~vy~ 204 (290)
.-.+|.|+|+.|+|||||++.+..
T Consensus 368 ~G~iI~LiG~sGSGKSTLar~La~ 391 (552)
T 3cr8_A 368 QGFTVFFTGLSGAGKSTLARALAA 391 (552)
T ss_dssp SCEEEEEEESSCHHHHHHHHHHHH
T ss_pred cceEEEEECCCCChHHHHHHHHHH
Confidence 347899999999999999999987
No 448
>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}
Probab=92.96 E-value=0.054 Score=44.62 Aligned_cols=23 Identities=13% Similarity=0.099 Sum_probs=20.5
Q ss_pred cEEEEEEcCCCCChhHHHHHHhc
Q 047336 182 LSVVAILDSIGLDKTAFTAEAYN 204 (290)
Q Consensus 182 ~~Vi~IvGmgGiGKTTLa~~vy~ 204 (290)
..+|+|.|+.|+||||+++.+-.
T Consensus 6 ~~iI~i~g~~GsGk~ti~~~la~ 28 (201)
T 3fdi_A 6 QIIIAIGREFGSGGHLVAKKLAE 28 (201)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHH
T ss_pred CeEEEEeCCCCCCHHHHHHHHHH
Confidence 35899999999999999998865
No 449
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=92.96 E-value=0.053 Score=44.68 Aligned_cols=24 Identities=13% Similarity=0.116 Sum_probs=20.3
Q ss_pred cEEEEEEcCCCCChhHHHHHHhcc
Q 047336 182 LSVVAILDSIGLDKTAFTAEAYNS 205 (290)
Q Consensus 182 ~~Vi~IvGmgGiGKTTLa~~vy~d 205 (290)
.--|.|+|.+|+|||||...+.++
T Consensus 27 ~~ki~vvG~~~vGKSsL~~~l~~~ 50 (214)
T 3q3j_B 27 RCKLVLVGDVQCGKTAMLQVLAKD 50 (214)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECcCCCCHHHHHHHHhcC
Confidence 456789999999999999988654
No 450
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=92.94 E-value=0.068 Score=45.42 Aligned_cols=25 Identities=12% Similarity=0.114 Sum_probs=21.4
Q ss_pred CcEEEEEEcCCCCChhHHHHHHhcc
Q 047336 181 QLSVVAILDSIGLDKTAFTAEAYNS 205 (290)
Q Consensus 181 ~~~Vi~IvGmgGiGKTTLa~~vy~d 205 (290)
....|+|+|.+|+|||||...+...
T Consensus 21 ~~~~I~lvG~~g~GKStl~n~l~~~ 45 (260)
T 2xtp_A 21 SELRIILVGKTGTGKSAAGNSILRK 45 (260)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHTS
T ss_pred CceEEEEECCCCCCHHHHHHHHhCC
Confidence 4567899999999999999988654
No 451
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=92.92 E-value=0.067 Score=46.98 Aligned_cols=25 Identities=16% Similarity=0.175 Sum_probs=21.6
Q ss_pred CcEEEEEEcCCCCChhHHHHHHhcc
Q 047336 181 QLSVVAILDSIGLDKTAFTAEAYNS 205 (290)
Q Consensus 181 ~~~Vi~IvGmgGiGKTTLa~~vy~d 205 (290)
+...|+|+|.+|+|||||...+...
T Consensus 6 ~~g~V~ivG~~nvGKSTLln~l~g~ 30 (301)
T 1wf3_A 6 YSGFVAIVGKPNVGKSTLLNNLLGV 30 (301)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHTS
T ss_pred cCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4567999999999999999988764
No 452
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=92.91 E-value=0.049 Score=50.58 Aligned_cols=24 Identities=8% Similarity=0.099 Sum_probs=21.7
Q ss_pred cEEEEEEcCCCCChhHHHHHHhcc
Q 047336 182 LSVVAILDSIGLDKTAFTAEAYNS 205 (290)
Q Consensus 182 ~~Vi~IvGmgGiGKTTLa~~vy~d 205 (290)
=.+++|+|..|+|||||++.+.+.
T Consensus 157 Gq~~~IvG~sGsGKSTLl~~Iag~ 180 (438)
T 2dpy_A 157 GQRMGLFAGSGVGKSVLLGMMARY 180 (438)
T ss_dssp TCEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHhcc
Confidence 468999999999999999999873
No 453
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=92.86 E-value=0.051 Score=50.16 Aligned_cols=21 Identities=14% Similarity=0.385 Sum_probs=18.9
Q ss_pred EEEEcCCCCChhHHHHHHhcc
Q 047336 185 VAILDSIGLDKTAFTAEAYNS 205 (290)
Q Consensus 185 i~IvGmgGiGKTTLa~~vy~d 205 (290)
|+|+|..|+|||||++.+...
T Consensus 34 I~lvG~sGaGKSTLln~L~g~ 54 (418)
T 2qag_C 34 LMVVGESGLGKSTLINSLFLT 54 (418)
T ss_dssp EEEECCTTSSHHHHHHHHTTC
T ss_pred EEEECCCCCcHHHHHHHHhCC
Confidence 499999999999999998864
No 454
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=92.86 E-value=0.055 Score=50.84 Aligned_cols=22 Identities=18% Similarity=0.108 Sum_probs=20.3
Q ss_pred EEEEEEcCCCCChhHHHHHHhc
Q 047336 183 SVVAILDSIGLDKTAFTAEAYN 204 (290)
Q Consensus 183 ~Vi~IvGmgGiGKTTLa~~vy~ 204 (290)
.+++|+|+.|+|||||.+.+..
T Consensus 30 e~~~liG~nGsGKSTLl~~l~G 51 (483)
T 3euj_A 30 LVTTLSGGNGAGKSTTMAGFVT 51 (483)
T ss_dssp SEEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEECCCCCcHHHHHHHHhc
Confidence 7999999999999999998864
No 455
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=92.84 E-value=0.054 Score=51.67 Aligned_cols=23 Identities=22% Similarity=0.108 Sum_probs=20.9
Q ss_pred cEEEEEEcCCCCChhHHHHHHhc
Q 047336 182 LSVVAILDSIGLDKTAFTAEAYN 204 (290)
Q Consensus 182 ~~Vi~IvGmgGiGKTTLa~~vy~ 204 (290)
=.+++|+|..|.|||||++.+..
T Consensus 47 Ge~~~LvG~NGaGKSTLlk~l~G 69 (538)
T 1yqt_A 47 GMVVGIVGPNGTGKSTAVKILAG 69 (538)
T ss_dssp TSEEEEECCTTSSHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 45899999999999999999876
No 456
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=92.82 E-value=0.042 Score=48.05 Aligned_cols=26 Identities=12% Similarity=0.171 Sum_probs=23.0
Q ss_pred CCcEEEEEEcCCCCChhHHHHHHhcc
Q 047336 180 TQLSVVAILDSIGLDKTAFTAEAYNS 205 (290)
Q Consensus 180 ~~~~Vi~IvGmgGiGKTTLa~~vy~d 205 (290)
..+..|+|+|..|+|||||...+...
T Consensus 22 ~~~~~I~vvG~~~~GKSTlln~l~g~ 47 (315)
T 1jwy_B 22 LDLPQIVVVGSQSSGKSSVLENIVGR 47 (315)
T ss_dssp TCCCEEEEEECSSSSHHHHHHHHHTS
T ss_pred CCCCeEEEEcCCCCCHHHHHHHHHCC
Confidence 46789999999999999999988764
No 457
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=92.82 E-value=0.057 Score=44.78 Aligned_cols=24 Identities=13% Similarity=0.181 Sum_probs=20.2
Q ss_pred CcEEEEEEcCCCCChhHHHHHHhc
Q 047336 181 QLSVVAILDSIGLDKTAFTAEAYN 204 (290)
Q Consensus 181 ~~~Vi~IvGmgGiGKTTLa~~vy~ 204 (290)
...-|.|+|.+|+|||||......
T Consensus 36 ~~~kVvlvG~~~vGKSSLl~r~~~ 59 (211)
T 2g3y_A 36 TYYRVVLIGEQGVGKSTLANIFAG 59 (211)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHC
T ss_pred CceEEEEECCCCCCHHHHHHHHHh
Confidence 345688999999999999988763
No 458
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=92.76 E-value=0.055 Score=52.37 Aligned_cols=23 Identities=26% Similarity=0.345 Sum_probs=21.1
Q ss_pred cEEEEEEcCCCCChhHHHHHHhc
Q 047336 182 LSVVAILDSIGLDKTAFTAEAYN 204 (290)
Q Consensus 182 ~~Vi~IvGmgGiGKTTLa~~vy~ 204 (290)
-.+++|+|+.|.|||||++.+..
T Consensus 382 Gei~~i~G~NGsGKSTLlk~l~G 404 (607)
T 3bk7_A 382 GEVIGIVGPNGIGKTTFVKMLAG 404 (607)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 35899999999999999999987
No 459
>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A*
Probab=92.76 E-value=0.04 Score=46.17 Aligned_cols=21 Identities=24% Similarity=0.257 Sum_probs=17.7
Q ss_pred EEEEEcCCCCChhHHHHHHhc
Q 047336 184 VVAILDSIGLDKTAFTAEAYN 204 (290)
Q Consensus 184 Vi~IvGmgGiGKTTLa~~vy~ 204 (290)
.|+|.|-||+||||+|-.+-.
T Consensus 2 kI~vs~kGGvGKTt~a~~LA~ 22 (254)
T 3kjh_A 2 KLAVAGKGGVGKTTVAAGLIK 22 (254)
T ss_dssp EEEEECSSSHHHHHHHHHHHH
T ss_pred EEEEecCCCCCHHHHHHHHHH
Confidence 377789999999999987754
No 460
>3ch4_B Pmkase, phosphomevalonate kinase; parallel beta-sheet with the strand order 23145, walker A motif, cholesterol biosynthesis, lipid synthesis; 1.76A {Homo sapiens}
Probab=92.69 E-value=0.083 Score=43.71 Aligned_cols=24 Identities=13% Similarity=-0.072 Sum_probs=21.2
Q ss_pred CcEEEEEEcCCCCChhHHHHHHhc
Q 047336 181 QLSVVAILDSIGLDKTAFTAEAYN 204 (290)
Q Consensus 181 ~~~Vi~IvGmgGiGKTTLa~~vy~ 204 (290)
...+|+|+||.|+||+|.|..+-+
T Consensus 10 ~~~II~itGk~~SGKd~va~~l~~ 33 (202)
T 3ch4_B 10 PRLVLLFSGKRKSGKDFVTEALQS 33 (202)
T ss_dssp CSEEEEEEECTTSSHHHHHHHHHH
T ss_pred CCEEEEEECCCCCChHHHHHHHHH
Confidence 357999999999999999988765
No 461
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=92.66 E-value=0.039 Score=53.29 Aligned_cols=21 Identities=14% Similarity=0.129 Sum_probs=19.0
Q ss_pred EEEEEcCCCCChhHHHHHHhc
Q 047336 184 VVAILDSIGLDKTAFTAEAYN 204 (290)
Q Consensus 184 Vi~IvGmgGiGKTTLa~~vy~ 204 (290)
-+-++|.+|+|||+||+.+.+
T Consensus 329 ~vLL~GppGtGKT~LAr~la~ 349 (595)
T 3f9v_A 329 HILIIGDPGTAKSQMLQFISR 349 (595)
T ss_dssp CEEEEESSCCTHHHHHHSSST
T ss_pred ceEEECCCchHHHHHHHHHHH
Confidence 467899999999999999987
No 462
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=92.61 E-value=0.28 Score=43.82 Aligned_cols=54 Identities=15% Similarity=-0.042 Sum_probs=36.6
Q ss_pred CcEEEEEEcCCCCChhHHHHHHhccccccccCCeeEEEECCCCCCHHHHHHHHHHHhh
Q 047336 181 QLSVVAILDSIGLDKTAFTAEAYNSSYVKHYFDYLAWIPAPYQYDPDQILDTVTWLSR 238 (290)
Q Consensus 181 ~~~Vi~IvGmgGiGKTTLa~~vy~d~~v~~~F~~~~wV~vs~~~~~~~ll~~Il~~l~ 238 (290)
.-.++-|.|.+|+||||||..+..+... +=..++|++. .-+...+...++....
T Consensus 45 ~G~LiiIaG~pG~GKTt~al~ia~~~a~--~g~~Vl~fSl--Ems~~ql~~Rlls~~~ 98 (338)
T 4a1f_A 45 KGSLVIIGARPSMGKTSLMMNMVLSALN--DDRGVAVFSL--EMSAEQLALRALSDLT 98 (338)
T ss_dssp TTCEEEEEECTTSCHHHHHHHHHHHHHH--TTCEEEEEES--SSCHHHHHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHH--cCCeEEEEeC--CCCHHHHHHHHHHHhh
Confidence 3457888999999999999888663222 1124566655 4556777777766543
No 463
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=92.57 E-value=0.061 Score=52.08 Aligned_cols=22 Identities=14% Similarity=0.228 Sum_probs=20.5
Q ss_pred EEEEEEcCCCCChhHHHHHHhc
Q 047336 183 SVVAILDSIGLDKTAFTAEAYN 204 (290)
Q Consensus 183 ~Vi~IvGmgGiGKTTLa~~vy~ 204 (290)
.+++|+|..|.|||||++.+..
T Consensus 379 Eiv~iiG~NGsGKSTLlk~l~G 400 (608)
T 3j16_B 379 EILVMMGENGTGKTTLIKLLAG 400 (608)
T ss_dssp CEEEEESCTTSSHHHHHHHHHT
T ss_pred eEEEEECCCCCcHHHHHHHHhc
Confidence 5799999999999999999976
No 464
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=92.54 E-value=0.058 Score=46.46 Aligned_cols=23 Identities=13% Similarity=0.312 Sum_probs=19.6
Q ss_pred EEEEEEcCCCCChhHHHHHHhcc
Q 047336 183 SVVAILDSIGLDKTAFTAEAYNS 205 (290)
Q Consensus 183 ~Vi~IvGmgGiGKTTLa~~vy~d 205 (290)
--|+|+|.+|+|||||...++..
T Consensus 9 ~~I~vvG~~g~GKSTLin~L~~~ 31 (274)
T 3t5d_A 9 FTLMVVGESGLGKSTLINSLFLT 31 (274)
T ss_dssp EEEEEEECTTSSHHHHHHHHSSS
T ss_pred EEEEEECCCCCCHHHHHHHHhCC
Confidence 35789999999999999987653
No 465
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=92.51 E-value=0.075 Score=43.99 Aligned_cols=23 Identities=22% Similarity=0.094 Sum_probs=20.2
Q ss_pred cEEEEEEcCCCCChhHHHHHHhc
Q 047336 182 LSVVAILDSIGLDKTAFTAEAYN 204 (290)
Q Consensus 182 ~~Vi~IvGmgGiGKTTLa~~vy~ 204 (290)
-..|.|.|..|+||||||..+..
T Consensus 34 g~~ilI~GpsGsGKStLA~~La~ 56 (205)
T 2qmh_A 34 GLGVLITGDSGVGKSETALELVQ 56 (205)
T ss_dssp TEEEEEECCCTTTTHHHHHHHHT
T ss_pred CEEEEEECCCCCCHHHHHHHHHH
Confidence 35688999999999999998866
No 466
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=92.51 E-value=0.063 Score=45.97 Aligned_cols=23 Identities=13% Similarity=0.133 Sum_probs=20.5
Q ss_pred EEEEEEcCCCCChhHHHHHHhcc
Q 047336 183 SVVAILDSIGLDKTAFTAEAYNS 205 (290)
Q Consensus 183 ~Vi~IvGmgGiGKTTLa~~vy~d 205 (290)
+.|+++|.+|+|||||...+...
T Consensus 2 ~kI~lvG~~n~GKSTL~n~L~g~ 24 (256)
T 3iby_A 2 THALLIGNPNCGKTTLFNALTNA 24 (256)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHHCC
Confidence 46899999999999999998764
No 467
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=92.51 E-value=0.071 Score=44.97 Aligned_cols=21 Identities=24% Similarity=0.113 Sum_probs=17.2
Q ss_pred EEEEEcCCCCChhHHHHHHhc
Q 047336 184 VVAILDSIGLDKTAFTAEAYN 204 (290)
Q Consensus 184 Vi~IvGmgGiGKTTLa~~vy~ 204 (290)
.|-+.|.||+||||+|-.+-.
T Consensus 8 ~I~~~~kgGvGKTt~a~~la~ 28 (228)
T 2r8r_A 8 KVFLGAAPGVGKTYAMLQAAH 28 (228)
T ss_dssp EEEEESSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHH
Confidence 466789999999999776655
No 468
>3fkq_A NTRC-like two-domain protein; RER070207001320, structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: ATP 2PE; 2.10A {Eubacterium rectale}
Probab=92.47 E-value=0.087 Score=47.62 Aligned_cols=25 Identities=20% Similarity=0.171 Sum_probs=20.9
Q ss_pred CCcEEEEEEc-CCCCChhHHHHHHhc
Q 047336 180 TQLSVVAILD-SIGLDKTAFTAEAYN 204 (290)
Q Consensus 180 ~~~~Vi~IvG-mgGiGKTTLa~~vy~ 204 (290)
.+.++|+|+| -||+||||+|-.+-.
T Consensus 141 ~~~kvIav~s~KGGvGKTT~a~nLA~ 166 (373)
T 3fkq_A 141 DKSSVVIFTSPCGGVGTSTVAAACAI 166 (373)
T ss_dssp TSCEEEEEECSSTTSSHHHHHHHHHH
T ss_pred CCceEEEEECCCCCChHHHHHHHHHH
Confidence 4689999996 799999999876654
No 469
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=92.46 E-value=0.074 Score=49.69 Aligned_cols=24 Identities=8% Similarity=0.057 Sum_probs=21.0
Q ss_pred CcEEEEEEcCCCCChhHHHHHHhc
Q 047336 181 QLSVVAILDSIGLDKTAFTAEAYN 204 (290)
Q Consensus 181 ~~~Vi~IvGmgGiGKTTLa~~vy~ 204 (290)
...+|.++|++|+||||+++.+..
T Consensus 38 ~~~~IvlvGlpGsGKSTia~~La~ 61 (469)
T 1bif_A 38 CPTLIVMVGLPARGKTYISKKLTR 61 (469)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEEECCCCCCHHHHHHHHHH
Confidence 356888999999999999999876
No 470
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=92.43 E-value=0.062 Score=51.65 Aligned_cols=24 Identities=17% Similarity=0.160 Sum_probs=21.3
Q ss_pred CcEEEEEEcCCCCChhHHHHHHhc
Q 047336 181 QLSVVAILDSIGLDKTAFTAEAYN 204 (290)
Q Consensus 181 ~~~Vi~IvGmgGiGKTTLa~~vy~ 204 (290)
.-.+++|+|+.|.|||||++.+..
T Consensus 368 ~G~~~~ivG~sGsGKSTLl~~l~g 391 (582)
T 3b60_A 368 AGKTVALVGRSGSGKSTIASLITR 391 (582)
T ss_dssp TTCEEEEEECTTSSHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhh
Confidence 346899999999999999999975
No 471
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=92.41 E-value=0.068 Score=48.32 Aligned_cols=26 Identities=12% Similarity=0.149 Sum_probs=21.8
Q ss_pred CcEEEEEEcCCCCChhHHHHHHhccc
Q 047336 181 QLSVVAILDSIGLDKTAFTAEAYNSS 206 (290)
Q Consensus 181 ~~~Vi~IvGmgGiGKTTLa~~vy~d~ 206 (290)
.+++|+|+|.+|+|||||.+.+.+..
T Consensus 178 ~~~~V~lvG~~naGKSTLln~L~~~~ 203 (364)
T 2qtf_A 178 NIPSIGIVGYTNSGKTSLFNSLTGLT 203 (364)
T ss_dssp -CCEEEEECBTTSSHHHHHHHHHCC-
T ss_pred CCcEEEEECCCCCCHHHHHHHHHCCC
Confidence 46789999999999999999988743
No 472
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=92.40 E-value=0.064 Score=51.89 Aligned_cols=23 Identities=13% Similarity=0.147 Sum_probs=21.0
Q ss_pred cEEEEEEcCCCCChhHHHHHHhc
Q 047336 182 LSVVAILDSIGLDKTAFTAEAYN 204 (290)
Q Consensus 182 ~~Vi~IvGmgGiGKTTLa~~vy~ 204 (290)
=.+++|+|+.|+|||||.+.+..
T Consensus 103 Gei~~LvGpNGaGKSTLLkiL~G 125 (608)
T 3j16_B 103 GQVLGLVGTNGIGKSTALKILAG 125 (608)
T ss_dssp TSEEEEECCTTSSHHHHHHHHHT
T ss_pred CCEEEEECCCCChHHHHHHHHhc
Confidence 45999999999999999999875
No 473
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=92.39 E-value=0.069 Score=44.12 Aligned_cols=25 Identities=12% Similarity=0.243 Sum_probs=20.9
Q ss_pred CcEEEEEEcCCCCChhHHHHHHhcc
Q 047336 181 QLSVVAILDSIGLDKTAFTAEAYNS 205 (290)
Q Consensus 181 ~~~Vi~IvGmgGiGKTTLa~~vy~d 205 (290)
..--|.|+|..|+|||||...+.+.
T Consensus 12 ~~~ki~v~G~~~vGKSsli~~l~~~ 36 (223)
T 3cpj_B 12 LLFKIVLIGDSGVGKSNLLSRFTKN 36 (223)
T ss_dssp EEEEEEEESCTTSSHHHHHHHHHHC
T ss_pred eeeEEEEECcCCCCHHHHHHHHhcC
Confidence 3457889999999999999888653
No 474
>1fx0_B ATP synthase beta chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_B*
Probab=92.32 E-value=0.17 Score=47.56 Aligned_cols=53 Identities=11% Similarity=0.043 Sum_probs=40.4
Q ss_pred cEEEEEEcCCCCChhHHHHHHhccccccccCCeeEEEECCCCCC-HHHHHHHHHH
Q 047336 182 LSVVAILDSIGLDKTAFTAEAYNSSYVKHYFDYLAWIPAPYQYD-PDQILDTVTW 235 (290)
Q Consensus 182 ~~Vi~IvGmgGiGKTTLa~~vy~d~~v~~~F~~~~wV~vs~~~~-~~~ll~~Il~ 235 (290)
=.-++|+|..|+|||+|++.+-++ ..+.|-+.++++-+.+..+ +.++.+++..
T Consensus 165 Gqr~gIfgg~GvGKT~L~~~l~~~-~a~~~~~v~V~~~iGER~rEv~e~~~~~~~ 218 (498)
T 1fx0_B 165 GGKIGLFGGAGVGKTVLIMELINN-IAKAHGGVSVFGGVGERTREGNDLYMEMKE 218 (498)
T ss_dssp TCCEEEEECSSSSHHHHHHHHHHH-TTTTCSSCEEEEEESCCSHHHHHHHHHHHH
T ss_pred CCeEEeecCCCCCchHHHHHHHHH-HHhhCCCEEEEEEcccCcHHHHHHHHhhhc
Confidence 356899999999999999888763 1234567889999988774 4567777764
No 475
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=92.30 E-value=0.064 Score=51.72 Aligned_cols=24 Identities=21% Similarity=0.185 Sum_probs=21.4
Q ss_pred CcEEEEEEcCCCCChhHHHHHHhc
Q 047336 181 QLSVVAILDSIGLDKTAFTAEAYN 204 (290)
Q Consensus 181 ~~~Vi~IvGmgGiGKTTLa~~vy~ 204 (290)
.-.+++|+|+.|.|||||++.+..
T Consensus 369 ~G~~~~ivG~sGsGKSTLl~~l~g 392 (595)
T 2yl4_A 369 SGSVTALVGPSGSGKSTVLSLLLR 392 (595)
T ss_dssp TTCEEEEECCTTSSSTHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhc
Confidence 346899999999999999999976
No 476
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=92.29 E-value=0.077 Score=45.03 Aligned_cols=25 Identities=12% Similarity=0.138 Sum_probs=21.1
Q ss_pred cEEEEEEcCCCCChhHHHHHHhccc
Q 047336 182 LSVVAILDSIGLDKTAFTAEAYNSS 206 (290)
Q Consensus 182 ~~Vi~IvGmgGiGKTTLa~~vy~d~ 206 (290)
.--|+++|.+|+|||||...+....
T Consensus 21 ~l~I~lvG~~g~GKSSlin~l~~~~ 45 (247)
T 3lxw_A 21 TRRLILVGRTGAGKSATGNSILGQR 45 (247)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHTSC
T ss_pred ceEEEEECCCCCcHHHHHHHHhCCC
Confidence 4567899999999999999887643
No 477
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=92.27 E-value=0.087 Score=45.55 Aligned_cols=24 Identities=13% Similarity=0.159 Sum_probs=21.1
Q ss_pred cEEEEEEcCCCCChhHHHHHHhcc
Q 047336 182 LSVVAILDSIGLDKTAFTAEAYNS 205 (290)
Q Consensus 182 ~~Vi~IvGmgGiGKTTLa~~vy~d 205 (290)
...|+++|.+|+|||||...+...
T Consensus 3 ~~kI~lvG~~nvGKSTL~n~L~g~ 26 (272)
T 3b1v_A 3 MTEIALIGNPNSGKTSLFNLITGH 26 (272)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHCC
T ss_pred ceEEEEECCCCCCHHHHHHHHHCC
Confidence 457899999999999999998764
No 478
>1g3q_A MIND ATPase, cell division inhibitor; alpha-beta-alpha layered, protein-ADP complex, cell cycle, hydrolase; HET: ADP; 2.00A {Pyrococcus furiosus} SCOP: c.37.1.10 PDB: 1g3r_A* 1ion_A*
Probab=92.26 E-value=0.084 Score=43.95 Aligned_cols=22 Identities=27% Similarity=0.324 Sum_probs=18.2
Q ss_pred EEEEEEc-CCCCChhHHHHHHhc
Q 047336 183 SVVAILD-SIGLDKTAFTAEAYN 204 (290)
Q Consensus 183 ~Vi~IvG-mgGiGKTTLa~~vy~ 204 (290)
++|+|+| -||+||||+|-.+-.
T Consensus 3 ~~i~v~s~kgGvGKTt~a~~LA~ 25 (237)
T 1g3q_A 3 RIISIVSGKGGTGKTTVTANLSV 25 (237)
T ss_dssp EEEEEECSSTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCCHHHHHHHHHH
Confidence 5788886 599999999987765
No 479
>2ck3_D ATP synthase subunit beta\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1cow_D* 1bmf_D* 1e1q_D* 1e1r_D* 1efr_D* 1e79_D* 1h8h_D* 1ohh_D* 1qo1_D 1w0j_D* 1w0k_D* 1h8e_D* 2jdi_D* 2jiz_D* 2jj1_D* 2jj2_D* 2v7q_D* 2wss_D* 2w6j_D 2w6e_D ...
Probab=92.25 E-value=0.15 Score=47.68 Aligned_cols=54 Identities=13% Similarity=0.121 Sum_probs=40.0
Q ss_pred cEEEEEEcCCCCChhHHHHHHhccccccccCCeeEEEECCCCCC-HHHHHHHHHHH
Q 047336 182 LSVVAILDSIGLDKTAFTAEAYNSSYVKHYFDYLAWIPAPYQYD-PDQILDTVTWL 236 (290)
Q Consensus 182 ~~Vi~IvGmgGiGKTTLa~~vy~d~~v~~~F~~~~wV~vs~~~~-~~~ll~~Il~~ 236 (290)
=.-++|+|..|+|||||++.+-++. .+.+-+.++++-+.+..+ +.++++++...
T Consensus 153 GQr~~Ifgg~G~GKT~L~~~i~~~~-~~~~~~v~V~~~iGER~rEv~e~~~~~~~~ 207 (482)
T 2ck3_D 153 GGKIGLFGGAGVGKTVLIMELINNV-AKAHGGYSVFAGVGERTREGNDLYHEMIES 207 (482)
T ss_dssp TCEEEEEECTTSSHHHHHHHHHHHT-TTTCSSEEEEEEESCCHHHHHHHHHHHHHH
T ss_pred CCeeeeecCCCCChHHHHHHHHHhh-HhhCCCEEEEEECCCcchHHHHHHHHhhhc
Confidence 3578999999999999998887631 234557788888888764 45677777654
No 480
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=92.22 E-value=0.071 Score=51.62 Aligned_cols=23 Identities=26% Similarity=0.122 Sum_probs=21.0
Q ss_pred cEEEEEEcCCCCChhHHHHHHhc
Q 047336 182 LSVVAILDSIGLDKTAFTAEAYN 204 (290)
Q Consensus 182 ~~Vi~IvGmgGiGKTTLa~~vy~ 204 (290)
=.+++|+|..|.|||||++.+..
T Consensus 117 Ge~~~LiG~NGsGKSTLlkiL~G 139 (607)
T 3bk7_A 117 GMVVGIVGPNGTGKTTAVKILAG 139 (607)
T ss_dssp TSEEEEECCTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCChHHHHHHHHhC
Confidence 46899999999999999999876
No 481
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=92.21 E-value=0.068 Score=51.39 Aligned_cols=24 Identities=21% Similarity=0.160 Sum_probs=21.3
Q ss_pred CcEEEEEEcCCCCChhHHHHHHhc
Q 047336 181 QLSVVAILDSIGLDKTAFTAEAYN 204 (290)
Q Consensus 181 ~~~Vi~IvGmgGiGKTTLa~~vy~ 204 (290)
.-.+++|+|+.|.|||||++.+..
T Consensus 368 ~G~~~~ivG~sGsGKSTll~~l~g 391 (582)
T 3b5x_A 368 QGKTVALVGRSGSGKSTIANLFTR 391 (582)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhc
Confidence 346899999999999999999875
No 482
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=92.20 E-value=0.1 Score=43.57 Aligned_cols=50 Identities=14% Similarity=0.148 Sum_probs=31.1
Q ss_pred CcEEEEEEcCCCCChhHHHHHHhccccccccCCeeEEEECCCCCCHHHHHHHH
Q 047336 181 QLSVVAILDSIGLDKTAFTAEAYNSSYVKHYFDYLAWIPAPYQYDPDQILDTV 233 (290)
Q Consensus 181 ~~~Vi~IvGmgGiGKTTLa~~vy~d~~v~~~F~~~~wV~vs~~~~~~~ll~~I 233 (290)
.-.++-|.|.+|+||||||.++.-+ .....-..+++++... +...+.+.+
T Consensus 29 ~G~l~~i~G~pG~GKT~l~l~~~~~-~~~~~~~~v~~~s~E~--~~~~~~~~~ 78 (251)
T 2zts_A 29 EGTTVLLTGGTGTGKTTFAAQFIYK-GAEEYGEPGVFVTLEE--RARDLRREM 78 (251)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHHH-HHHHHCCCEEEEESSS--CHHHHHHHH
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHH-HHHhcCCCceeecccC--CHHHHHHHH
Confidence 3467888999999999999775431 2222234566666543 345555444
No 483
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=92.19 E-value=0.096 Score=40.89 Aligned_cols=22 Identities=14% Similarity=0.178 Sum_probs=19.2
Q ss_pred cEEEEEEcCCCCChhHHHHHHh
Q 047336 182 LSVVAILDSIGLDKTAFTAEAY 203 (290)
Q Consensus 182 ~~Vi~IvGmgGiGKTTLa~~vy 203 (290)
..+..|+|+.|.|||||...++
T Consensus 23 ~g~~~I~G~NGsGKStil~Ai~ 44 (149)
T 1f2t_A 23 EGINLIIGQNGSGKSSLLDAIL 44 (149)
T ss_dssp SEEEEEECCTTSSHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHH
Confidence 4588999999999999988775
No 484
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=92.18 E-value=0.084 Score=45.20 Aligned_cols=25 Identities=16% Similarity=0.185 Sum_probs=21.3
Q ss_pred CcEEEEEEcCCCCChhHHHHHHhcc
Q 047336 181 QLSVVAILDSIGLDKTAFTAEAYNS 205 (290)
Q Consensus 181 ~~~Vi~IvGmgGiGKTTLa~~vy~d 205 (290)
+...|+++|.+|+|||||...+...
T Consensus 4 ~~~kI~lvG~~nvGKTsL~n~l~g~ 28 (258)
T 3a1s_A 4 HMVKVALAGCPNVGKTSLFNALTGT 28 (258)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHTT
T ss_pred CceEEEEECCCCCCHHHHHHHHHCC
Confidence 3457899999999999999988763
No 485
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=92.09 E-value=0.073 Score=51.38 Aligned_cols=24 Identities=21% Similarity=0.167 Sum_probs=21.6
Q ss_pred CcEEEEEEcCCCCChhHHHHHHhc
Q 047336 181 QLSVVAILDSIGLDKTAFTAEAYN 204 (290)
Q Consensus 181 ~~~Vi~IvGmgGiGKTTLa~~vy~ 204 (290)
.-.+++|+|+.|.|||||++.+..
T Consensus 380 ~G~~~~ivG~sGsGKSTll~~l~g 403 (598)
T 3qf4_B 380 PGQKVALVGPTGSGKTTIVNLLMR 403 (598)
T ss_dssp TTCEEEEECCTTSSTTHHHHHHTT
T ss_pred CCCEEEEECCCCCcHHHHHHHHhc
Confidence 356899999999999999999976
No 486
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=92.04 E-value=0.082 Score=44.04 Aligned_cols=21 Identities=14% Similarity=0.180 Sum_probs=17.9
Q ss_pred EEEEEcCCCCChhHHHHHHhc
Q 047336 184 VVAILDSIGLDKTAFTAEAYN 204 (290)
Q Consensus 184 Vi~IvGmgGiGKTTLa~~vy~ 204 (290)
-|.|+|-+|+|||+|+....+
T Consensus 15 KivlvGd~~VGKTsLi~r~~~ 35 (216)
T 4dkx_A 15 KLVFLGEQSVGKTSLITRFMY 35 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECcCCcCHHHHHHHHHh
Confidence 467999999999999987654
No 487
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=92.02 E-value=0.09 Score=47.21 Aligned_cols=25 Identities=12% Similarity=0.201 Sum_probs=22.1
Q ss_pred CcEEEEEEcCCCCChhHHHHHHhcc
Q 047336 181 QLSVVAILDSIGLDKTAFTAEAYNS 205 (290)
Q Consensus 181 ~~~Vi~IvGmgGiGKTTLa~~vy~d 205 (290)
....|+|+|.+|+|||||...+...
T Consensus 166 ~~~~v~lvG~~gvGKSTLin~L~~~ 190 (357)
T 2e87_A 166 EIPTVVIAGHPNVGKSTLLKALTTA 190 (357)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHCSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4678999999999999999998764
No 488
>1dek_A Deoxynucleoside monophosphate kinase; transferase, phosphotransferase; HET: DGP; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1 PDB: 1del_A*
Probab=92.01 E-value=0.093 Score=44.65 Aligned_cols=22 Identities=5% Similarity=-0.068 Sum_probs=20.1
Q ss_pred EEEEEEcCCCCChhHHHHHHhc
Q 047336 183 SVVAILDSIGLDKTAFTAEAYN 204 (290)
Q Consensus 183 ~Vi~IvGmgGiGKTTLa~~vy~ 204 (290)
.+|+|.|+.|+||||+|+.+-.
T Consensus 2 ~~i~ltG~~~sGK~tv~~~l~~ 23 (241)
T 1dek_A 2 KLIFLSGVKRSGKDTTADFIMS 23 (241)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5899999999999999998865
No 489
>3ez2_A Plasmid partition protein A; type IA, DNA binding, winged-HTH, DNA bindin; HET: ADP EPE; 2.05A {Escherichia coli} PDB: 3ez6_A* 3ez7_A
Probab=91.95 E-value=0.16 Score=46.15 Aligned_cols=26 Identities=23% Similarity=0.094 Sum_probs=20.9
Q ss_pred CCCcEEEEEE-cCCCCChhHHHHHHhc
Q 047336 179 PTQLSVVAIL-DSIGLDKTAFTAEAYN 204 (290)
Q Consensus 179 ~~~~~Vi~Iv-GmgGiGKTTLa~~vy~ 204 (290)
....++|+|+ |-||+||||+|-.+-.
T Consensus 105 ~~~~~vIav~s~KGGvGKTT~a~nLA~ 131 (398)
T 3ez2_A 105 YSEAYVIFISNLKGGVSKTVSTVSLAH 131 (398)
T ss_dssp CCSCEEEEECCSSSSSSHHHHHHHHHH
T ss_pred CCCCeEEEEEeCCCCccHHHHHHHHHH
Confidence 3568899999 6699999998876643
No 490
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=91.93 E-value=0.037 Score=48.89 Aligned_cols=23 Identities=9% Similarity=0.144 Sum_probs=20.3
Q ss_pred EEEEEEcCCCCChhHHHHHHhcc
Q 047336 183 SVVAILDSIGLDKTAFTAEAYNS 205 (290)
Q Consensus 183 ~Vi~IvGmgGiGKTTLa~~vy~d 205 (290)
.+++|+|+.|+|||||.+.+...
T Consensus 174 ~~~~lvG~sG~GKSTLln~L~g~ 196 (307)
T 1t9h_A 174 KTTVFAGQSGVGKSSLLNAISPE 196 (307)
T ss_dssp SEEEEEESHHHHHHHHHHHHCC-
T ss_pred CEEEEECCCCCCHHHHHHHhccc
Confidence 48899999999999999999763
No 491
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=91.90 E-value=0.16 Score=44.74 Aligned_cols=73 Identities=14% Similarity=-0.004 Sum_probs=44.2
Q ss_pred ccchhHHHHHHHHhcCCCCcEEEEEEcCCCCChhHHHHHHhccc-ccc-ccCCeeEEEECCC-CCCHHHHHHHHHHHhhh
Q 047336 163 GLDDRMEELLDLLIEGPTQLSVVAILDSIGLDKTAFTAEAYNSS-YVK-HYFDYLAWIPAPY-QYDPDQILDTVTWLSRR 239 (290)
Q Consensus 163 G~e~~~~~L~~~L~~~~~~~~Vi~IvGmgGiGKTTLa~~vy~d~-~v~-~~F~~~~wV~vs~-~~~~~~ll~~Il~~l~~ 239 (290)
|-++..+.|.+.+..+. .+.+-++|+.|+||||+|+.+-+.. ... .|.+. .++..+. ...+.. .+++++.+..
T Consensus 1 g~~~~~~~L~~~i~~~~--~~~~Lf~Gp~G~GKtt~a~~la~~~~~~~~~~~d~-~~l~~~~~~~~id~-ir~li~~~~~ 76 (305)
T 2gno_A 1 GAKDQLETLKRIIEKSE--GISILINGEDLSYPREVSLELPEYVEKFPPKASDV-LEIDPEGENIGIDD-IRTIKDFLNY 76 (305)
T ss_dssp ---CHHHHHHHHHHTCS--SEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTTE-EEECCSSSCBCHHH-HHHHHHHHTS
T ss_pred ChHHHHHHHHHHHHCCC--CcEEEEECCCCCCHHHHHHHHHHhCchhhccCCCE-EEEcCCcCCCCHHH-HHHHHHHHhh
Confidence 34556667777776554 6788899999999999999886521 011 23333 4555443 344444 4557766653
No 492
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=91.86 E-value=0.038 Score=44.71 Aligned_cols=24 Identities=17% Similarity=0.163 Sum_probs=5.1
Q ss_pred cEEEEEEcCCCCChhHHHHHHhcc
Q 047336 182 LSVVAILDSIGLDKTAFTAEAYNS 205 (290)
Q Consensus 182 ~~Vi~IvGmgGiGKTTLa~~vy~d 205 (290)
.--|.|+|..|+|||||...+.++
T Consensus 20 ~~~i~v~G~~~~GKssli~~l~~~ 43 (208)
T 2yc2_C 20 RCKVAVVGEATVGKSALISMFTSK 43 (208)
T ss_dssp EEEEEEC-----------------
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 346789999999999999887764
No 493
>2ph1_A Nucleotide-binding protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.70A {Archaeoglobus fulgidus dsm 4304} PDB: 3kb1_A*
Probab=91.82 E-value=0.087 Score=44.95 Aligned_cols=23 Identities=26% Similarity=0.228 Sum_probs=18.4
Q ss_pred cEEEEEE-cCCCCChhHHHHHHhc
Q 047336 182 LSVVAIL-DSIGLDKTAFTAEAYN 204 (290)
Q Consensus 182 ~~Vi~Iv-GmgGiGKTTLa~~vy~ 204 (290)
.++|+|+ |-||+||||+|-.+-.
T Consensus 18 ~~vI~v~s~kGGvGKTT~a~nLA~ 41 (262)
T 2ph1_A 18 KSRIAVMSGKGGVGKSTVTALLAV 41 (262)
T ss_dssp SCEEEEECSSSCTTHHHHHHHHHH
T ss_pred CeEEEEEcCCCCCCHHHHHHHHHH
Confidence 5688887 4699999999887654
No 494
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=91.80 E-value=0.044 Score=44.99 Aligned_cols=23 Identities=13% Similarity=0.322 Sum_probs=19.9
Q ss_pred cEEEEEEcCCCCChhHHHHHHhc
Q 047336 182 LSVVAILDSIGLDKTAFTAEAYN 204 (290)
Q Consensus 182 ~~Vi~IvGmgGiGKTTLa~~vy~ 204 (290)
.--|.|+|..|+|||||...+.+
T Consensus 11 ~~ki~vvG~~~~GKSsli~~l~~ 33 (218)
T 4djt_A 11 TYKICLIGDGGVGKTTYINRVLD 33 (218)
T ss_dssp EEEEEEECCTTSSHHHHHCBCTT
T ss_pred ccEEEEECCCCCCHHHHHHHHhc
Confidence 45678999999999999988875
No 495
>2xj4_A MIPZ; replication, cell division, ATPase, WACA; 1.60A {Caulobacter vibrioides} PDB: 2xj9_A* 2xit_A
Probab=91.74 E-value=0.089 Score=45.59 Aligned_cols=22 Identities=14% Similarity=0.214 Sum_probs=18.4
Q ss_pred EEEEEEc-CCCCChhHHHHHHhc
Q 047336 183 SVVAILD-SIGLDKTAFTAEAYN 204 (290)
Q Consensus 183 ~Vi~IvG-mgGiGKTTLa~~vy~ 204 (290)
++|+|++ -||+||||+|..+-.
T Consensus 5 kvI~v~s~KGGvGKTT~a~nLA~ 27 (286)
T 2xj4_A 5 RVIVVGNEKGGAGKSTIAVHLVT 27 (286)
T ss_dssp EEEEECCSSSCTTHHHHHHHHHH
T ss_pred eEEEEEcCCCCCCHHHHHHHHHH
Confidence 5888884 699999999988765
No 496
>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*
Probab=91.70 E-value=0.11 Score=50.03 Aligned_cols=24 Identities=13% Similarity=-0.020 Sum_probs=21.5
Q ss_pred CcEEEEEEcCCCCChhHHHHHHhc
Q 047336 181 QLSVVAILDSIGLDKTAFTAEAYN 204 (290)
Q Consensus 181 ~~~Vi~IvGmgGiGKTTLa~~vy~ 204 (290)
...+|.|.|+.|+||||+|+.+-+
T Consensus 395 ~~~~I~l~GlsGSGKSTiA~~La~ 418 (573)
T 1m8p_A 395 QGFTIFLTGYMNSGKDAIARALQV 418 (573)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred cceEEEeecCCCCCHHHHHHHHHH
Confidence 357899999999999999999876
No 497
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=91.58 E-value=0.13 Score=48.68 Aligned_cols=25 Identities=8% Similarity=0.146 Sum_probs=22.2
Q ss_pred CcEEEEEEcCCCCChhHHHHHHhcc
Q 047336 181 QLSVVAILDSIGLDKTAFTAEAYNS 205 (290)
Q Consensus 181 ~~~Vi~IvGmgGiGKTTLa~~vy~d 205 (290)
...+|.+.|+.|+||||+|+.+-..
T Consensus 394 ~~~~I~l~GlsGsGKSTIa~~La~~ 418 (511)
T 1g8f_A 394 QGFSIVLGNSLTVSREQLSIALLST 418 (511)
T ss_dssp CCEEEEECTTCCSCHHHHHHHHHHH
T ss_pred cceEEEecccCCCCHHHHHHHHHHH
Confidence 4578999999999999999999873
No 498
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=91.58 E-value=0.09 Score=49.84 Aligned_cols=19 Identities=21% Similarity=0.275 Sum_probs=0.0
Q ss_pred EEEEEcCCCCChhHHHHHH
Q 047336 184 VVAILDSIGLDKTAFTAEA 202 (290)
Q Consensus 184 Vi~IvGmgGiGKTTLa~~v 202 (290)
+++|+|..|.|||||++.+
T Consensus 41 ~~~l~G~nGsGKSTL~~~~ 59 (525)
T 1tf7_A 41 STLVSGTSGTGKTLFSIQF 59 (525)
T ss_dssp EEEEEESTTSSHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHH
No 499
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=91.55 E-value=0.18 Score=46.56 Aligned_cols=45 Identities=9% Similarity=0.230 Sum_probs=32.3
Q ss_pred cccchhHHHHHHHHhcC-----CCCcEEEEEEcCCCCChhHHHHHHhccc
Q 047336 162 VGLDDRMEELLDLLIEG-----PTQLSVVAILDSIGLDKTAFTAEAYNSS 206 (290)
Q Consensus 162 vG~e~~~~~L~~~L~~~-----~~~~~Vi~IvGmgGiGKTTLa~~vy~d~ 206 (290)
.|.++-.+.|.+.+... +.....|+|+|.+|+|||||...+....
T Consensus 150 ~gv~~L~~~i~~~l~~~~~~~~~~~~~ki~lvG~~nvGKSSLin~l~~~~ 199 (436)
T 2hjg_A 150 LGLGDLLDAVAEHFKNIPETKYNEEVIQFCLIGRPNVGKSSLVNAMLGEE 199 (436)
T ss_dssp BTHHHHHHHHHHTGGGCCSSCCCTTCEEEEEECSTTSSHHHHHHHHHTST
T ss_pred CChHHHHHHHHHhcCccccccccccCcEEEEEcCCCCCHHHHHHHHhCCC
Confidence 35556666666655432 2356788999999999999999887654
No 500
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=91.52 E-value=0.082 Score=50.06 Aligned_cols=21 Identities=10% Similarity=0.014 Sum_probs=19.3
Q ss_pred EEEEEcCCCCChhHHHHHHhc
Q 047336 184 VVAILDSIGLDKTAFTAEAYN 204 (290)
Q Consensus 184 Vi~IvGmgGiGKTTLa~~vy~ 204 (290)
.++|+|..|.|||||++.+..
T Consensus 262 ~i~I~GptGSGKTTlL~aL~~ 282 (511)
T 2oap_1 262 SAIVVGETASGKTTTLNAIMM 282 (511)
T ss_dssp CEEEEESTTSSHHHHHHHHGG
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 589999999999999998876
Done!