BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 047337
(490 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2CYG|A Chain A, Crystal Structure At 1.45- Resolution Of The Major
Allergen Endo-Beta-1,3-Glucanase Of Banana As A
Molecular Basis For The Latex-Fruit Syndrome
Length = 312
Score = 181 bits (460), Expect = 6e-46, Method: Compositional matrix adjust.
Identities = 110/325 (33%), Positives = 187/325 (57%), Gaps = 16/325 (4%)
Query: 30 VGVNWGTMSTHHLPADNVVQMLRENRFNKLKLFEADKKILDALIGSDIEVMLAIPNYMLL 89
+GV +G + + P VV + + N +++L++ ++ L AL S+I+V+L +P +
Sbjct: 1 IGVCYGMLGNNLPPPSEVVSLYKSNNIARMRLYDPNQAALQALRNSNIQVLLDVPRSDVQ 60
Query: 90 EMSEDPGAAASWVYANVSSYFYTGGVNIKYVAVGNEPFLRTYNDTYRYITLPALKNIQQA 149
++ +P AA W+ NV +Y+ + V+ +Y+AVGNE L +D +YI LPA++NI A
Sbjct: 61 SLASNPSAAGDWIRRNVVAYWPS--VSFRYIAVGNE--LIPGSDLAQYI-LPAMRNIYNA 115
Query: 150 LNDAGLGSKIKATVPFNADIYNSPESNPVPSAGGFRDEVKDLTIGIIQFLHLNNAPFTVN 209
L+ AGL ++IK + + + + S P PSAG F + I+QFL N AP VN
Sbjct: 116 LSSAGLQNQIKVSTAVDTGVLGT--SYP-PSAGAFSSAAQAYLSPIVQFLASNGAPLLVN 172
Query: 210 IYPFLSLYGN-DYFPVDFAFFEGTNKPIRDGSLLYTNVFDANFDTLVWSLDKAGYPDMHI 268
+YP+ S GN + +A F + ++DG Y N+FDA D + +L++ G ++ +
Sbjct: 173 VYPYFSYTGNPGQISLPYALFTASGVVVQDGRFSYQNLFDAIVDAVFAALERVGGANVAV 232
Query: 269 IVGEVGWPT-DGDKNANIENAKKFSQGLLKHVLSGAGTPARKGT-IDVYLFSLLDENAKS 326
+V E GWP+ G A+ NA+ ++Q L++HV G GTP R G I+ Y+F + +EN K+
Sbjct: 233 VVSESGWPSAGGGAEASTSNAQTYNQNLIRHV--GGGTPRRPGKEIEAYIFEMFNENQKA 290
Query: 327 IAPGNFERHWGIFEYDGKPKYELDL 351
G E+++G+F + +P Y++
Sbjct: 291 ---GGIEQNFGLFYPNKQPVYQISF 312
>pdb|3UR7|A Chain A, Higher-density Crystal Structure Of Potato
Endo-1,3-beta-glucanase
pdb|3UR7|B Chain B, Higher-density Crystal Structure Of Potato
Endo-1,3-beta-glucanase
pdb|3UR8|A Chain A, Lower-density Crystal Structure Of Potato
Endo-1,3-beta-glucanase
pdb|3UR8|B Chain B, Lower-density Crystal Structure Of Potato
Endo-1,3-beta-glucanase
Length = 323
Score = 181 bits (459), Expect = 9e-46, Method: Compositional matrix adjust.
Identities = 114/327 (34%), Positives = 181/327 (55%), Gaps = 18/327 (5%)
Query: 30 VGVNWGTMSTHHLPAD-NVVQMLRENRFNKLKLFEADKKILDALIGSDIEVMLAIPNYML 88
+GV +G ++ ++LP+D +V+++ N K++++ + +AL GS+IE++L +PN
Sbjct: 3 IGVCYGKIA-NNLPSDQDVIKLYNANNIKKMRIYYPHTNVFNALKGSNIEIILDVPN-QD 60
Query: 89 LEMSEDPGAAASWVYANVSSYFYTGGVNIKYVAVGNEPFLRTYNDTYRYITLPALKNIQQ 148
LE +P A WV N+ ++F V KY+AVGNE + Y PA++NI
Sbjct: 61 LEALANPSNANGWVQDNIRNHF--PDVKFKYIAVGNEVDPGRESGKYARFVGPAMENIYN 118
Query: 149 ALNDAGLGSKIKATVPFNADIYNSPESNPVPSAGG-FRDEVKDLTIGIIQFLHLNNAPFT 207
AL+ AGL ++IK + Y+ +N P FR+E K II FL +N P
Sbjct: 119 ALSSAGLQNQIKVST----STYSGLLTNTYPPRDSIFREEYKSFINPIIGFLARHNLPLL 174
Query: 208 VNIYPFLSLYGN-DYFPVDFAFFEGTNKPIRDGSLLYTNVFDANFDTLVWSLDKAGYPDM 266
NIYP+ N + P+ +A F R Y N+FDA D++ ++ +K G ++
Sbjct: 175 ANIYPYFGHIDNTNAVPLSYALFNQQ----RRNDTGYQNLFDALVDSMYFATEKLGGQNI 230
Query: 267 HIIVGEVGWPTDGDKNANIENAKKFSQGLLKHVLSGAGTPARKG-TIDVYLFSLLDENAK 325
IIV E GWP++G A ++NA+ + L+ HV GAGTP + G TI+ YLF++ DEN K
Sbjct: 231 EIIVSESGWPSEGHPAATLKNARTYYTNLINHVKRGAGTPKKPGKTIETYLFAMFDENEK 290
Query: 326 SIAPGNFERHWGIFEYDGKPKYELDLS 352
E+H+G+F D +PKY+L+ +
Sbjct: 291 KGEAS--EKHFGLFNPDQRPKYQLNFN 315
>pdb|3EM5|A Chain A, Crystal Structure Of A Native Endo Beta-1,3-Glucanase (Hev
B 2), A Major Allergen From Hevea Brasiliensis
pdb|3EM5|B Chain B, Crystal Structure Of A Native Endo Beta-1,3-Glucanase (Hev
B 2), A Major Allergen From Hevea Brasiliensis
pdb|3EM5|C Chain C, Crystal Structure Of A Native Endo Beta-1,3-Glucanase (Hev
B 2), A Major Allergen From Hevea Brasiliensis
pdb|3EM5|D Chain D, Crystal Structure Of A Native Endo Beta-1,3-Glucanase (Hev
B 2), A Major Allergen From Hevea Brasiliensis
pdb|3F55|A Chain A, Crystal Structure Of The Native Endo Beta-1,3-Glucanase
(Hev B 2), A Major Allergen From Hevea Brasiliensis
(Space Group P41)
pdb|3F55|B Chain B, Crystal Structure Of The Native Endo Beta-1,3-Glucanase
(Hev B 2), A Major Allergen From Hevea Brasiliensis
(Space Group P41)
pdb|3F55|C Chain C, Crystal Structure Of The Native Endo Beta-1,3-Glucanase
(Hev B 2), A Major Allergen From Hevea Brasiliensis
(Space Group P41)
pdb|3F55|D Chain D, Crystal Structure Of The Native Endo Beta-1,3-Glucanase
(Hev B 2), A Major Allergen From Hevea Brasiliensis
(Space Group P41)
Length = 316
Score = 179 bits (453), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 110/327 (33%), Positives = 180/327 (55%), Gaps = 16/327 (4%)
Query: 30 VGVNWGTMSTHHLPADNVVQMLRENRFNKLKLFEADKKILDALIGSDIEVMLAIPNYMLL 89
VGV +G + P V+ + +++ ++++++ ++ +L+AL GS+IE++L +PN L
Sbjct: 2 VGVCYGMQGNNLPPVSEVIALYKKSNITRMRIYDPNQAVLEALRGSNIELILGVPNSDLQ 61
Query: 90 EMSEDPGAAASWVYANVSSYFYTGGVNIKYVAVGNE--PFLRTYNDTYRYITLPALKNIQ 147
++ +P A SWV NV ++ V +Y+AVGNE P R +++ LPA++NI
Sbjct: 62 SLT-NPSNAKSWVQKNVRGFW--SSVRFRYIAVGNEISPVNRGTAWLAQFV-LPAMRNIH 117
Query: 148 QALNDAGLGSKIKATVPFNADIYNSPESNPVPSAGGFRDEVKDLTIGIIQFLHLNNAPFT 207
A+ AGL +IK + + + + S P PSAG FRD+V+ II+FL +P
Sbjct: 118 DAIRSAGLQDQIKVSTAIDLTLVGN--SYP-PSAGAFRDDVRSYLNPIIRFLSSIRSPLL 174
Query: 208 VNIYPFLSLYGNDY-FPVDFAFFEGTNKPIRDGSLLYTNVFDANFDTLVWSLDKAGYPDM 266
NIYP+ + GN + +A F + + DG Y N+FDA D L +L++A +
Sbjct: 175 ANIYPYFTYAGNPRDISLPYALFTSPSVVVWDGQRGYKNLFDATLDALYSALERASGGSL 234
Query: 267 HIIVGEVGWPTDGDKNANIENAKKFSQGLLKHVLSGAGTPAR-KGTIDVYLFSLLDENAK 325
++V E GWP+ G A +N + + L++HV GTP R K I+ YLF++ DEN K
Sbjct: 235 EVVVSESGWPSAGAFAATFDNGRTYLSNLIQHV--KRGTPKRPKRAIETYLFAMFDENKK 292
Query: 326 SIAPGNFERHWGIFEYDGKPKYELDLS 352
E+H+G+F + KY L+ S
Sbjct: 293 Q---PEVEKHFGLFFPNKWQKYNLNFS 316
>pdb|4GZI|A Chain A, Active-site Mutant Of Potato Endo-1,3-beta-glucanase In
Complex With Laminaratriose
pdb|4GZJ|A Chain A, Active-site Mutant Of Potato Endo-1,3-beta-glucanase In
Complex With Laminaratriose And Laminaratetrose
Length = 323
Score = 178 bits (452), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 113/327 (34%), Positives = 180/327 (55%), Gaps = 18/327 (5%)
Query: 30 VGVNWGTMSTHHLPAD-NVVQMLRENRFNKLKLFEADKKILDALIGSDIEVMLAIPNYML 88
+GV +G ++ ++LP+D +V+++ N K++++ + +AL GS+IE++L +PN
Sbjct: 3 IGVCYGKIA-NNLPSDQDVIKLYNANNIKKMRIYYPHTNVFNALKGSNIEIILDVPN-QD 60
Query: 89 LEMSEDPGAAASWVYANVSSYFYTGGVNIKYVAVGNEPFLRTYNDTYRYITLPALKNIQQ 148
LE +P A WV N+ ++F V KY+AVGNE + Y PA++NI
Sbjct: 61 LEALANPSNANGWVQDNIRNHF--PDVKFKYIAVGNEVDPGRESGKYARFVGPAMENIYN 118
Query: 149 ALNDAGLGSKIKATVPFNADIYNSPESNPVPSAGG-FRDEVKDLTIGIIQFLHLNNAPFT 207
AL+ AGL ++IK + Y+ +N P FR+E K II FL +N P
Sbjct: 119 ALSSAGLQNQIKVST----STYSGLLTNTYPPRDSIFREEYKSFINPIIGFLARHNLPLL 174
Query: 208 VNIYPFLSLYGN-DYFPVDFAFFEGTNKPIRDGSLLYTNVFDANFDTLVWSLDKAGYPDM 266
NIYP+ N + P+ +A F R Y N+FDA D++ ++ +K G ++
Sbjct: 175 ANIYPYFGHIDNTNAVPLSYALFNQQ----RRNDTGYQNLFDALVDSMYFATEKLGGQNI 230
Query: 267 HIIVGEVGWPTDGDKNANIENAKKFSQGLLKHVLSGAGTPARKG-TIDVYLFSLLDENAK 325
IIV GWP++G A ++NA+ + L+ HV GAGTP + G TI+ YLF++ DEN K
Sbjct: 231 EIIVSASGWPSEGHPAATLKNARTYYTNLINHVKRGAGTPKKPGKTIETYLFAMFDENEK 290
Query: 326 SIAPGNFERHWGIFEYDGKPKYELDLS 352
E+H+G+F D +PKY+L+ +
Sbjct: 291 KGEAS--EKHFGLFNPDQRPKYQLNFN 315
>pdb|1AQ0|A Chain A, Barley 1,3-1,4-Beta-Glucanase In Monoclinic Space Group
pdb|1AQ0|B Chain B, Barley 1,3-1,4-Beta-Glucanase In Monoclinic Space Group
pdb|1GHR|A Chain A, The Three-Dimensional Structures Of Two Plant Beta-Glucan
Endohydrolases With Distinct Substrate Specificities
Length = 306
Score = 165 bits (417), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 113/326 (34%), Positives = 172/326 (52%), Gaps = 24/326 (7%)
Query: 30 VGVNWGTMSTHHLPA-DNVVQMLRENRFNKLKLFEADKKILDALIGSDIEVMLAIPNYML 88
+GV +G MS ++LPA VV M + N ++L+ ++ L A+ G+ I V++ PN +L
Sbjct: 1 IGVCYG-MSANNLPAASTVVSMFKSNGIKSMRLYAPNQAALQAVGGTGINVVVGAPNDVL 59
Query: 89 LEMSEDPGAAASWVYANVSSYFYTGGVNIKYVAVGNEPFLRTYNDTYRYITLPALKNIQQ 148
++ P AAASWV +N+ +Y V+ +YV VGNE R + +PA+KN+
Sbjct: 60 SNLAASPAAAASWVKSNIQAY---PKVSFRYVCVGNE----VAGGATRNL-VPAMKNVHG 111
Query: 149 ALNDAGLGSKIKATVPFNADIYN--SPESNPVPSAGGFRDEVKDLTIGIIQFLHLNNAPF 206
AL AGLG IK T + I SP PSAG F E ++QFL NAP
Sbjct: 112 ALVAAGLG-HIKVTTSVSQAILGVFSP-----PSAGSFTGEAAAFMGPVVQFLARTNAPL 165
Query: 207 TVNIYPFLS-LYGNDYFPVDFAFFEGTNKPIRDGSLLYTNVFDANFDTLVWSLDKAGYPD 265
NIYP+L+ Y + +A F + +RDG+ Y N+FD D ++ K G
Sbjct: 166 MANIYPYLAWAYNPSAMDMGYALFNASGTVVRDGAYGYQNLFDTTVDAFYTAMGKHGGSS 225
Query: 266 MHIIVGEVGWPTDGDKNANIENAKKFSQGLLKHVLSGAGTPARKGTIDVYLFSLLDENAK 325
+ ++V E GWP+ G A NA+ ++Q L+ HV G GTP G I+ Y+F++ +EN K
Sbjct: 226 VKLVVSESGWPSGGGTAATPANARFYNQHLINHV--GRGTPRHPGAIETYIFAMFNENQK 283
Query: 326 SIAPGNFERHWGIFEYDGKPKYELDL 351
E++WG+F + + Y ++
Sbjct: 284 D---SGVEQNWGLFYPNMQHVYPINF 306
>pdb|1GHS|A Chain A, The Three-Dimensional Structures Of Two Plant Beta-Glucan
Endohydrolases With Distinct Substrate Specificities
pdb|1GHS|B Chain B, The Three-Dimensional Structures Of Two Plant Beta-Glucan
Endohydrolases With Distinct Substrate Specificities
Length = 306
Score = 151 bits (382), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 107/325 (32%), Positives = 173/325 (53%), Gaps = 22/325 (6%)
Query: 30 VGVNWGTMSTHHLPADNVVQMLRENRFNKLKLFEADKKILDALIGSDIEVMLAIPNYMLL 89
+GV +G + + +VVQ+ R N ++++ AD + L AL S I ++L I N L
Sbjct: 1 IGVCYGVIGNNLPSRSDVVQLYRSKGINGMRIYFADGQALSALRNSGIGLILDIGNDQLA 60
Query: 90 EMSEDPGAAASWVYANVSSYFYTGGVNIKYVAVGNEPFLRTYNDTYRYITLPALKNIQQA 149
++ AASWV NV Y+ VNIKY+A GNE LPA++N+ A
Sbjct: 61 NIAASTSNAASWVQNNVRPYY--PAVNIKYIAAGNE-----VQGGATQSILPAMRNLNAA 113
Query: 150 LNDAGLGS-KIKATVPFNADIYNSPESNPVPSAGGFRDEVKDLTIGIIQFLHLNNAPFTV 208
L+ AGLG+ K+ ++ F+ + P PSAG F++ + + L AP
Sbjct: 114 LSAAGLGAIKVSTSIRFDEVANSFP-----PSAGVFKNA---YMTDVARLLASTGAPLLA 165
Query: 209 NIYPFLSLYGN-DYFPVDFAFFE-GTNKPIRDGSLLYTNVFDANFDTLVWSLDKAGYPDM 266
N+YP+ + N +++A F+ GT ++ L YT++FDA D + +L+KAG P +
Sbjct: 166 NVYPYFAYRDNPGSISLNYATFQPGTTVRDQNNGLTYTSLFDAMVDAVYAALEKAGAPAV 225
Query: 267 HIIVGEVGWPTDGDKNANIENAKKFSQGLLKHVLSGAGTPARKGTIDVYLFSLLDENAKS 326
++V E GWP+ G A+ NA+ ++QGL+ HV G GTP ++ ++ Y+F++ +EN K+
Sbjct: 226 KVVVSESGWPSAGGFAASAGNARTYNQGLINHV--GGGTPKKREALETYIFAMFNENQKT 283
Query: 327 IAPGNFERHWGIFEYDGKPKYELDL 351
ER +G+F D P Y +
Sbjct: 284 --GDATERSFGLFNPDKSPAYNIQF 306
>pdb|2JON|A Chain A, Solution Structure Of The C-Terminal Domain Ole E 9
Length = 101
Score = 68.6 bits (166), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 37/86 (43%), Positives = 51/86 (59%), Gaps = 3/86 (3%)
Query: 373 WCVLNPHADDFEELPDSIDYACSLS-DCTALGYGSSC-NHLTVEGNASYAFNMYYQMNSQ 430
WCV P D ++L +I+YACS DC + G +C TV+ +A+Y N+YYQ +
Sbjct: 13 WCVPKPGVSD-DQLTGNINYACSQGIDCGPIQPGGACFEPNTVKAHAAYVMNLYYQHAGR 71
Query: 431 ESWNCDFSGLAMVTDGDPSDDHCQFP 456
SWNCDFS A +T+ +PS C FP
Sbjct: 72 NSWNCDFSQTATLTNTNPSYGACNFP 97
>pdb|3KXW|A Chain A, The Crystal Structure Of Fatty Acid Amp Ligase From
Legionella Pneumophila
pdb|3LNV|A Chain A, The Crystal Structure Of Fatty Acyl-Adenylate Ligase From
L. Pneumophila In Complex With Acyl Adenylate And
Pyrophosphate
Length = 590
Score = 33.5 bits (75), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 29/62 (46%), Gaps = 3/62 (4%)
Query: 170 YNSPESNPVPSAGGFRDEVKD---LTIGIIQFLHLNNAPFTVNIYPFLSLYGNDYFPVDF 226
+N PE AG +D+ + L G + FLH N T I + +YG +++P D
Sbjct: 414 WNQPEETRHAFAGKIKDDERSAIYLRTGDLGFLHENELYVTGRIKDLIIIYGKNHYPQDI 473
Query: 227 AF 228
F
Sbjct: 474 EF 475
>pdb|1I1W|A Chain A, 0.89a Ultra High Resolution Structure Of A Thermostable
Xylanase From Thermoascus Aurantiacus
pdb|1I1X|A Chain A, 1.11 A Atomic Resolution Structure Of A Thermostable
Xylanase From Thermoascus Aurantiacus
Length = 303
Score = 32.7 bits (73), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 33/113 (29%), Positives = 43/113 (38%), Gaps = 24/113 (21%)
Query: 213 FLSLYGNDYFPVDFAFFEGTNKPIRDGSLLYTNVFDANFDTLVWSLDKAGYPDMHIIVGE 272
FL++ G DY P+ F T + + LY N ++ LD A YP IV
Sbjct: 144 FLNVIGEDYIPIAFQ----TARAADPNAKLYINDYN---------LDSASYPKTQAIVNR 190
Query: 273 V------GWPTDGDKNANIENAKKFSQGLLKHVLSGAGTPARKGTIDVYLFSL 319
V G P DG I + S G VL A GT +V + L
Sbjct: 191 VKKWRAAGVPIDG-----IGSQTHLSAGQGASVLQALPLLASAGTPEVAITEL 238
>pdb|3O2L|A Chain A, Crystal Structure Of An Inactive Kemp Elimination Design
Hg-1
Length = 317
Score = 32.0 bits (71), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 31/102 (30%), Positives = 46/102 (45%), Gaps = 22/102 (21%)
Query: 213 FLSLYGNDYFPVDFAFFEGTNKPIRDGSLLYTNVFDANFDTLVWSLDKAGYPDMHIIVGE 272
FL++ G DY P+ F T + + LY N ++ LD A YP IV
Sbjct: 145 FLNVIGEDYIPIAFQ----TARAADPNAKLYINDYN---------LDSASYPKTQAIVNR 191
Query: 273 V------GWPTDGDKNANIENAKKFSQGLLKH--VLSGAGTP 306
V G P DG + +A + + G+L+ +L+ AGTP
Sbjct: 192 VKQWRAAGVPIDGIGSQTHLSAGQGA-GVLQALPLLASAGTP 232
>pdb|1K6A|A Chain A, Structural Studies On The Mobility In The Active Site Of
The Thermoascus Aurantiacus Xylanase I
Length = 303
Score = 32.0 bits (71), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 31/102 (30%), Positives = 46/102 (45%), Gaps = 22/102 (21%)
Query: 213 FLSLYGNDYFPVDFAFFEGTNKPIRDGSLLYTNVFDANFDTLVWSLDKAGYPDMHIIVGE 272
FL++ G DY P+ F T + + LY N ++ LD A YP IV
Sbjct: 144 FLNVIGEDYIPIAFQ----TARAADPNAKLYINDYN---------LDSASYPKTQAIVNR 190
Query: 273 V------GWPTDGDKNANIENAKKFSQGLLKH--VLSGAGTP 306
V G P DG + +A + + G+L+ +L+ AGTP
Sbjct: 191 VKQWRAAGVPIDGIGSQTHLSAGQGA-GVLQALPLLASAGTP 231
>pdb|1GOK|A Chain A, Thermostable Xylanase I From Thermoascus Aurantiacus-
Crystal Form Ii
pdb|1GOO|A Chain A, Thermostable Xylanase I From Thermoascus Aurantiacus -
Cryocooled Glycerol Complex
pdb|1GOM|A Chain A, Thermostable Xylanase I From Thermoascus Aurantiacus -
Crystal Form I
pdb|1GOR|A Chain A, Thermostable Xylanase I From Thermoascus Aurantiacus-
Xylobiose Complex At 100 K
pdb|1GOQ|A Chain A, Thermostable Xylanase I From Thermoascus Aurantiacus-Room
Temperature Xylobiose Complex
Length = 303
Score = 32.0 bits (71), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 31/102 (30%), Positives = 46/102 (45%), Gaps = 22/102 (21%)
Query: 213 FLSLYGNDYFPVDFAFFEGTNKPIRDGSLLYTNVFDANFDTLVWSLDKAGYPDMHIIVGE 272
FL++ G DY P+ F T + + LY N ++ LD A YP IV
Sbjct: 144 FLNVIGEDYIPIAFQ----TARAADPNAKLYINDYN---------LDSASYPKTQAIVNR 190
Query: 273 V------GWPTDGDKNANIENAKKFSQGLLKH--VLSGAGTP 306
V G P DG + +A + + G+L+ +L+ AGTP
Sbjct: 191 VKQWRAAGVPIDGIGSQTHLSAGQGA-GVLQALPLLASAGTP 231
>pdb|2BNJ|A Chain A, The Xylanase Ta From Thermoascus Aurantiacus Utilizes
Arabinose Decorations Of Xylan As Significant Substrate
Specificity Determinants
Length = 303
Score = 32.0 bits (71), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 31/102 (30%), Positives = 46/102 (45%), Gaps = 22/102 (21%)
Query: 213 FLSLYGNDYFPVDFAFFEGTNKPIRDGSLLYTNVFDANFDTLVWSLDKAGYPDMHIIVGE 272
FL++ G DY P+ F T + + LY N ++ LD A YP IV
Sbjct: 144 FLNVIGEDYIPIAFQ----TARAADPNAKLYINDYN---------LDSASYPKTQAIVNR 190
Query: 273 V------GWPTDGDKNANIENAKKFSQGLLKH--VLSGAGTP 306
V G P DG + +A + + G+L+ +L+ AGTP
Sbjct: 191 VKKWRAAGVPIDGIGSQTHLSAGQGA-GVLQALPLLASAGTP 231
>pdb|3EZ7|A Chain A, Partition Protein Apo Form In Space Group I4122
Length = 398
Score = 31.2 bits (69), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 11/31 (35%), Positives = 18/31 (58%)
Query: 30 VGVNWGTMSTHHLPADNVVQMLRENRFNKLK 60
+ +W + HLP N+ +L+EN +KLK
Sbjct: 212 IASDWRELCNEHLPGQNIHAVLKENVIDKLK 242
>pdb|3EZ2|A Chain A, Partition Protein-Adp Complex
pdb|3EZ2|B Chain B, Partition Protein-Adp Complex
pdb|3EZ6|A Chain A, Structure Of Para-Adp Complex:tetragonal Form
pdb|3EZ6|B Chain B, Structure Of Para-Adp Complex:tetragonal Form
Length = 398
Score = 30.8 bits (68), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 11/31 (35%), Positives = 18/31 (58%)
Query: 30 VGVNWGTMSTHHLPADNVVQMLRENRFNKLK 60
+ +W + HLP N+ +L+EN +KLK
Sbjct: 212 IASDWRELCNEHLPGQNIHAVLKENVIDKLK 242
>pdb|3NYD|A Chain A, Crystal Structure Of Kemp Eliminase Hg-2 Complexed With
Transition State Analog 5-Nitro Benzotriazole
pdb|3NYD|B Chain B, Crystal Structure Of Kemp Eliminase Hg-2 Complexed With
Transition State Analog 5-Nitro Benzotriazole
Length = 316
Score = 30.4 bits (67), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 32/108 (29%), Positives = 41/108 (37%), Gaps = 14/108 (12%)
Query: 213 FLSLYGNDYFPVDFAFFEGTNKPIRDGSLLYTNVFDANFDTLVWSLDKAGYPDMHIIVGE 272
FL++ G DY P+ F T + + LY + D N LD A YP IV
Sbjct: 144 FLNVIGEDYIPIAFQ----TARAADPNAKLY--IMDYN-------LDSASYPKTQAIVNR 190
Query: 273 VG-WPTDGDKNANIENAKKFSQGLLKHVLSGAGTPARKGTIDVYLFSL 319
V W G I + S G VL A GT +V + L
Sbjct: 191 VKQWRAAGVPIDGIGSQTHLSAGQGAGVLQALPLLASAGTPEVSILML 238
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.137 0.424
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,091,580
Number of Sequences: 62578
Number of extensions: 765000
Number of successful extensions: 1573
Number of sequences better than 100.0: 18
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 1535
Number of HSP's gapped (non-prelim): 18
length of query: 490
length of database: 14,973,337
effective HSP length: 103
effective length of query: 387
effective length of database: 8,527,803
effective search space: 3300259761
effective search space used: 3300259761
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (25.0 bits)