Query 047337
Match_columns 490
No_of_seqs 293 out of 1734
Neff 6.3
Searched_HMMs 46136
Date Fri Mar 29 10:09:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047337.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/047337hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF00332 Glyco_hydro_17: Glyco 100.0 6.2E-85 1.3E-89 663.2 19.5 308 30-351 1-310 (310)
2 COG5309 Exo-beta-1,3-glucanase 100.0 8.5E-42 1.9E-46 330.5 21.4 250 27-343 43-305 (305)
3 smart00768 X8 Possibly involve 99.9 3.3E-27 7.2E-32 196.7 6.0 83 372-455 1-85 (85)
4 PF07983 X8: X8 domain; Inter 99.8 2E-21 4.4E-26 159.2 3.7 70 372-442 1-78 (78)
5 PF03198 Glyco_hydro_72: Gluca 99.3 3.5E-11 7.6E-16 121.5 14.4 196 29-279 29-252 (314)
6 PF07745 Glyco_hydro_53: Glyco 98.9 6.5E-08 1.4E-12 99.8 18.1 247 44-349 26-329 (332)
7 COG3867 Arabinogalactan endo-1 98.4 5.9E-06 1.3E-10 82.8 13.3 206 44-301 65-328 (403)
8 PRK10150 beta-D-glucuronidase; 98.1 0.0011 2.5E-08 73.9 24.8 258 29-350 294-586 (604)
9 PF00150 Cellulase: Cellulase 98.0 0.00076 1.6E-08 66.6 20.2 130 29-161 10-170 (281)
10 smart00633 Glyco_10 Glycosyl h 97.7 0.0018 3.8E-08 64.6 17.4 80 254-349 171-251 (254)
11 PF11790 Glyco_hydro_cc: Glyco 96.8 0.042 9.2E-07 54.4 14.8 66 266-344 166-231 (239)
12 PF02836 Glyco_hydro_2_C: Glyc 96.3 0.16 3.5E-06 51.5 16.3 96 29-126 17-132 (298)
13 TIGR03356 BGL beta-galactosida 94.8 7.2 0.00016 42.1 22.5 79 45-127 57-163 (427)
14 PLN02814 beta-glucosidase 93.7 3.2 7E-05 45.7 17.4 72 263-344 385-461 (504)
15 PF00232 Glyco_hydro_1: Glycos 83.0 0.41 8.8E-06 51.9 0.3 275 45-342 61-430 (455)
16 PF02449 Glyco_hydro_42: Beta- 78.8 5.6 0.00012 41.8 7.1 82 45-128 13-140 (374)
17 PRK09936 hypothetical protein; 73.1 20 0.00044 36.7 8.9 59 29-87 21-96 (296)
18 cd02875 GH18_chitobiase Chitob 69.3 38 0.00083 35.5 10.5 102 55-162 55-157 (358)
19 PF03662 Glyco_hydro_79n: Glyc 67.6 8.5 0.00018 40.0 5.0 87 67-153 113-203 (319)
20 COG4782 Uncharacterized protei 67.6 15 0.00033 38.7 6.8 57 243-302 125-187 (377)
21 smart00481 POLIIIAc DNA polyme 64.6 21 0.00044 27.7 5.6 44 42-85 15-63 (67)
22 cd02874 GH18_CFLE_spore_hydrol 63.7 58 0.0012 33.1 10.3 83 66-155 48-138 (313)
23 PRK13511 6-phospho-beta-galact 62.2 15 0.00033 40.1 6.0 46 45-90 57-121 (469)
24 PF00925 GTP_cyclohydro2: GTP 60.9 11 0.00023 35.4 4.0 38 47-84 131-168 (169)
25 PLN02849 beta-glucosidase 58.2 20 0.00044 39.6 6.1 72 263-344 383-461 (503)
26 PLN02998 beta-glucosidase 56.0 21 0.00045 39.4 5.7 72 263-344 390-466 (497)
27 PF01229 Glyco_hydro_39: Glyco 55.0 3.2E+02 0.0069 29.9 18.2 247 50-346 48-350 (486)
28 TIGR00505 ribA GTP cyclohydrol 54.5 19 0.00041 34.5 4.5 33 48-80 131-163 (191)
29 PRK00393 ribA GTP cyclohydrola 54.2 19 0.00042 34.7 4.5 33 48-80 134-166 (197)
30 PF05990 DUF900: Alpha/beta hy 51.1 40 0.00086 33.2 6.3 41 258-301 42-88 (233)
31 PRK09525 lacZ beta-D-galactosi 50.9 80 0.0017 38.1 9.9 97 29-127 352-464 (1027)
32 PRK09593 arb 6-phospho-beta-gl 46.9 45 0.00098 36.6 6.5 71 266-344 369-448 (478)
33 PF02055 Glyco_hydro_30: O-Gly 44.6 3.6E+02 0.0078 29.8 13.1 87 74-161 166-276 (496)
34 PRK12485 bifunctional 3,4-dihy 43.4 28 0.0006 37.0 4.1 33 47-80 330-362 (369)
35 cd00641 GTP_cyclohydro2 GTP cy 43.3 36 0.00077 32.6 4.5 34 48-81 133-166 (193)
36 PRK10340 ebgA cryptic beta-D-g 42.9 2.4E+02 0.0052 34.1 12.2 97 29-127 336-451 (1021)
37 PRK14019 bifunctional 3,4-dihy 41.5 31 0.00068 36.6 4.1 35 48-83 328-362 (367)
38 COG1671 Uncharacterized protei 40.5 81 0.0018 29.3 6.1 89 60-155 3-119 (150)
39 PRK09589 celA 6-phospho-beta-g 40.0 72 0.0016 35.0 6.8 45 45-89 70-134 (476)
40 PRK15014 6-phospho-beta-glucos 39.5 51 0.0011 36.2 5.5 71 266-344 369-448 (477)
41 cd04743 NPD_PKS 2-Nitropropane 39.0 2E+02 0.0044 30.0 9.5 80 27-126 55-134 (320)
42 PRK09314 bifunctional 3,4-dihy 38.6 40 0.00086 35.4 4.3 34 47-80 300-334 (339)
43 cd02872 GH18_chitolectin_chito 38.1 2.4E+02 0.0052 29.2 10.1 77 75-154 69-151 (362)
44 PRK09318 bifunctional 3,4-dihy 37.5 45 0.00097 35.7 4.5 38 48-85 320-357 (387)
45 PRK08815 GTP cyclohydrolase; P 36.9 46 0.00099 35.5 4.5 37 48-84 305-341 (375)
46 PRK09311 bifunctional 3,4-dihy 36.4 47 0.001 35.7 4.6 38 47-84 338-375 (402)
47 KOG0626 Beta-glucosidase, lact 36.1 83 0.0018 34.9 6.3 73 261-342 403-486 (524)
48 PLN02831 Bifunctional GTP cycl 35.9 48 0.001 36.2 4.5 37 48-84 373-409 (450)
49 PRK09319 bifunctional 3,4-dihy 35.4 49 0.0011 37.0 4.6 38 48-85 343-380 (555)
50 TIGR03632 bact_S11 30S ribosom 34.7 85 0.0019 27.3 5.1 36 46-81 51-91 (108)
51 COG3934 Endo-beta-mannanase [C 34.2 1.2E+02 0.0026 33.5 7.0 187 99-349 123-312 (587)
52 PRK09989 hypothetical protein; 34.1 4.3E+02 0.0092 25.8 10.8 51 30-81 4-58 (258)
53 COG1433 Uncharacterized conser 31.8 93 0.002 27.8 4.9 40 45-84 55-94 (121)
54 TIGR01579 MiaB-like-C MiaB-lik 31.3 5.4E+02 0.012 27.3 11.7 26 190-216 305-330 (414)
55 COG4213 XylF ABC-type xylose t 31.0 1.2E+02 0.0025 31.7 6.1 75 66-163 175-249 (341)
56 PF04909 Amidohydro_2: Amidohy 30.7 1.3E+02 0.0028 28.9 6.4 54 140-210 84-137 (273)
57 TIGR02631 xylA_Arthro xylose i 30.1 7E+02 0.015 26.5 14.6 41 43-83 33-88 (382)
58 PF14871 GHL6: Hypothetical gl 29.8 1.2E+02 0.0025 27.4 5.3 44 43-86 1-67 (132)
59 PRK09852 cryptic 6-phospho-bet 29.4 1.6E+02 0.0034 32.4 7.2 46 45-90 74-139 (474)
60 TIGR01233 lacG 6-phospho-beta- 29.3 1.1E+02 0.0024 33.4 6.1 46 45-90 56-120 (467)
61 cd01543 PBP1_XylR Ligand-bindi 28.5 3.9E+02 0.0085 25.5 9.3 36 44-79 97-141 (265)
62 PF06309 Torsin: Torsin; Inte 28.2 1.2E+02 0.0025 27.5 4.9 52 250-302 37-116 (127)
63 cd00598 GH18_chitinase-like Th 27.7 2.1E+02 0.0046 26.6 7.1 85 67-155 53-142 (210)
64 PRK07198 hypothetical protein; 27.5 53 0.0012 35.2 3.0 37 48-84 338-375 (418)
65 TIGR03628 arch_S11P archaeal r 26.8 1.4E+02 0.0029 26.6 5.0 36 45-80 53-101 (114)
66 KOG0078 GTP-binding protein SE 26.1 1.1E+02 0.0023 30.0 4.6 83 27-128 42-129 (207)
67 PRK06552 keto-hydroxyglutarate 25.4 6E+02 0.013 24.7 9.8 89 42-151 117-210 (213)
68 PF14488 DUF4434: Domain of un 25.2 60 0.0013 30.4 2.7 21 66-86 68-88 (166)
69 COG0807 RibA GTP cyclohydrolas 25.0 1.2E+02 0.0027 29.3 4.8 39 48-86 133-171 (193)
70 PF06180 CbiK: Cobalt chelatas 24.8 7.3E+02 0.016 25.0 12.4 141 40-216 56-208 (262)
71 smart00636 Glyco_18 Glycosyl h 24.8 5.8E+02 0.012 25.9 10.2 80 69-153 57-142 (334)
72 CHL00041 rps11 ribosomal prote 24.5 1.6E+02 0.0035 25.9 5.2 35 46-80 64-103 (116)
73 PF14587 Glyco_hydr_30_2: O-Gl 24.4 2.3E+02 0.005 30.3 7.1 97 67-164 108-227 (384)
74 PF02811 PHP: PHP domain; Int 24.2 1.4E+02 0.0029 26.8 4.9 45 41-85 15-64 (175)
75 PF00411 Ribosomal_S11: Riboso 24.1 1.2E+02 0.0026 26.4 4.2 35 47-81 52-91 (110)
76 PRK09607 rps11p 30S ribosomal 22.7 1.7E+02 0.0038 26.6 5.1 36 45-80 60-108 (132)
77 TIGR03234 OH-pyruv-isom hydrox 22.7 1.9E+02 0.0042 28.1 5.9 51 30-81 3-57 (254)
78 PF00331 Glyco_hydro_10: Glyco 22.1 1.3E+02 0.0028 31.0 4.8 90 252-348 220-312 (320)
79 PF15513 DUF4651: Domain of un 21.6 2.1E+02 0.0046 22.6 4.6 39 310-348 19-60 (62)
80 cd06545 GH18_3CO4_chitinase Th 21.3 2E+02 0.0044 28.3 5.7 81 67-155 50-133 (253)
81 PRK05309 30S ribosomal protein 21.2 2.1E+02 0.0045 25.8 5.2 35 46-80 68-107 (128)
82 cd02876 GH18_SI-CLP Stabilin-1 21.1 6.4E+02 0.014 25.6 9.6 87 66-155 54-148 (318)
83 PF00977 His_biosynth: Histidi 20.3 2.6E+02 0.0056 27.3 6.2 70 41-128 28-107 (229)
No 1
>PF00332 Glyco_hydro_17: Glycosyl hydrolases family 17; InterPro: IPR000490 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 17 GH17 from CAZY comprises enzymes with several known activities; endo-1,3-beta-glucosidase (3.2.1.39 from EC); lichenase (3.2.1.73 from EC); exo-1,3-glucanase (3.2.1.58 from EC). Currently these enzymes have only been found in plants and in fungi. ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1AQ0_B 1GHR_A 1GHS_B 2CYG_A 3UR8_A 3UR7_B 3EM5_C 3F55_D.
Probab=100.00 E-value=6.2e-85 Score=663.20 Aligned_cols=308 Identities=43% Similarity=0.789 Sum_probs=252.0
Q ss_pred eeEEecCCCCCCCCHHHHHHHHHhCCCCeEEeccCChHHHHHHhcCCCEEEEeccCcccccccCCHHHHHHHHHhhcccc
Q 047337 30 VGVNWGTMSTHHLPADNVVQMLRENRFNKLKLFEADKKILDALIGSDIEVMLAIPNYMLLEMSEDPGAAASWVYANVSSY 109 (490)
Q Consensus 30 ~GvnYg~~~~n~ps~~~vv~llk~~~i~~VRlY~~d~~vL~A~~~tgi~V~lGV~n~~~~~la~~~~aA~~Wv~~~V~~~ 109 (490)
||||||+.++|+|+|.+|++++|+++|++||||++|+++|+|+++|||+|++||+|++++++++++.+|..|+++||.+|
T Consensus 1 iGvnyG~~~~nlp~p~~vv~l~ks~~i~~vri~d~~~~iL~a~a~S~i~v~v~vpN~~l~~la~~~~~A~~Wv~~nv~~~ 80 (310)
T PF00332_consen 1 IGVNYGRVGNNLPSPCKVVSLLKSNGITKVRIYDADPSILRAFAGSGIEVMVGVPNEDLASLASSQSAAGSWVRTNVLPY 80 (310)
T ss_dssp EEEEE---SSS---HHHHHHHHHHTT--EEEESS--HHHHHHHTTS--EEEEEE-GGGHHHHHHHHHHHHHHHHHHTCTC
T ss_pred CeEeccCccCCCCCHHHHHHHHHhcccccEEeecCcHHHHHHHhcCCceeeeccChHHHHHhccCHHHHhhhhhhccccc
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCcceEEEEEecccccccCCCchhhhchHHHHHHHHHHHHHcCCCCCceEeccccccccCCCCCCCCCCCcccccchh
Q 047337 110 FYTGGVNIKYVAVGNEPFLRTYNDTYRYITLPALKNIQQALNDAGLGSKIKATVPFNADIYNSPESNPVPSAGGFRDEVK 189 (490)
Q Consensus 110 ~p~~~~~I~~I~VGNEvl~~~~~~~~~~~lv~am~ni~~aL~~~gl~~~IkVsT~~~~~vl~~s~p~~~Ps~g~F~~~~~ 189 (490)
+|+ ++|++|+||||++... . ...|+|+|+|+|++|+++||+++|||+|+++++++.++|| ||.|.|++++.
T Consensus 81 ~~~--~~i~~i~VGnEv~~~~--~--~~~lvpAm~ni~~aL~~~~L~~~IkVst~~~~~vl~~s~P---PS~g~F~~~~~ 151 (310)
T PF00332_consen 81 LPA--VNIRYIAVGNEVLTGT--D--NAYLVPAMQNIHNALTAAGLSDQIKVSTPHSMDVLSNSFP---PSAGVFRSDIA 151 (310)
T ss_dssp TTT--SEEEEEEEEES-TCCS--G--GGGHHHHHHHHHHHHHHTT-TTTSEEEEEEEGGGEEE-SS---GGG-EESHHHH
T ss_pred Ccc--cceeeeecccccccCc--c--ceeeccHHHHHHHHHHhcCcCCcceeccccccccccccCC---CccCcccccch
Confidence 998 9999999999999642 1 2279999999999999999998999999999999999999 99999999999
Q ss_pred hhHHHHHHHHhhcCCceeeecCCcccccCCCC-cCcccccccCCCccccCCCccchhhHHhhhhHHHHHHHHcCCCCceE
Q 047337 190 DLTIGIIQFLHLNNAPFTVNIYPFLSLYGNDY-FPVDFAFFEGTNKPIRDGSLLYTNVFDANFDTLVWSLDKAGYPDMHI 268 (490)
Q Consensus 190 ~~~~~~l~fL~~~~s~~~vNiyPyf~~~~~~~-~~l~yA~f~~~~~~~~d~~~~Y~nlfda~vdav~~a~~k~g~~~~~v 268 (490)
++|++|++||+++++|||+|+||||++..+|. ++||||+|+++...+ |++++|+||||+|+|++++||+|+|+++++|
T Consensus 152 ~~~~~~l~fL~~t~spf~vN~yPyfa~~~~~~~~~l~yAlf~~~~~~~-D~~~~y~nlfDa~~da~~~a~~~~g~~~~~v 230 (310)
T PF00332_consen 152 SVMDPLLKFLDGTNSPFMVNVYPYFAYQNNPQNISLDYALFQPNSGVV-DGGLAYTNLFDAMVDAVYAAMEKLGFPNVPV 230 (310)
T ss_dssp HHHHHHHHHHHHHT--EEEE--HHHHHHHSTTTS-HHHHTT-SSS-SE-ETTEEESSHHHHHHHHHHHHHHTTT-TT--E
T ss_pred hhhhHHHHHhhccCCCceeccchhhhccCCcccCCccccccccccccc-ccchhhhHHHHHHHHHHHHHHHHhCCCCcee
Confidence 99999999999999999999999999999986 999999999998766 7789999999999999999999999999999
Q ss_pred EEcccccCCCCCCCCCHHHHHHHHHHHHHHHHhCCCCCCCCC-CccEEEeeccccccccCCCCCccceeEeeecCCceee
Q 047337 269 IVGEVGWPTDGDKNANIENAKKFSQGLLKHVLSGAGTPARKG-TIDVYLFSLLDENAKSIAPGNFERHWGIFEYDGKPKY 347 (490)
Q Consensus 269 vVtETGWPS~G~~~aS~~Na~~y~~~lv~~~~s~~Gtp~rp~-~~~~y~F~~FDE~wK~~~~g~~E~~wGlf~~d~~~ky 347 (490)
+||||||||+|+..|+++||+.|++++++|+. .|||+||+ .+++||||||||+||+ +..+|||||||++||+|||
T Consensus 231 vv~ETGWPs~G~~~a~~~nA~~~~~nl~~~~~--~gt~~~~~~~~~~y~F~~FdE~~K~--~~~~E~~wGlf~~d~~~ky 306 (310)
T PF00332_consen 231 VVGETGWPSAGDPGATPENAQAYNQNLIKHVL--KGTPLRPGNGIDVYIFEAFDENWKP--GPEVERHWGLFYPDGTPKY 306 (310)
T ss_dssp EEEEE---SSSSTTCSHHHHHHHHHHHHHHCC--GBBSSSBSS---EEES-SB--TTSS--SSGGGGG--SB-TTSSBSS
T ss_pred EEeccccccCCCCCCCcchhHHHHHHHHHHHh--CCCcccCCCCCeEEEEEEecCcCCC--CCcccceeeeECCCCCeec
Confidence 99999999999988999999999999999997 68999998 8999999999999996 2349999999999999999
Q ss_pred eeec
Q 047337 348 ELDL 351 (490)
Q Consensus 348 ~l~~ 351 (490)
+|+|
T Consensus 307 ~~~f 310 (310)
T PF00332_consen 307 DLDF 310 (310)
T ss_dssp ----
T ss_pred CCCC
Confidence 9986
No 2
>COG5309 Exo-beta-1,3-glucanase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=8.5e-42 Score=330.46 Aligned_cols=250 Identities=20% Similarity=0.285 Sum_probs=194.1
Q ss_pred CCeeeEEecCCCCC--CCCHHHHHHHHH---hCCCCeEEeccCC----hHHHHHHhcCCCEEEEeccCcccccccCCHHH
Q 047337 27 GDGVGVNWGTMSTH--HLPADNVVQMLR---ENRFNKLKLFEAD----KKILDALIGSDIEVMLAIPNYMLLEMSEDPGA 97 (490)
Q Consensus 27 ~~~~GvnYg~~~~n--~ps~~~vv~llk---~~~i~~VRlY~~d----~~vL~A~~~tgi~V~lGV~n~~~~~la~~~~a 97 (490)
.+..+|+||++.++ ||+.+++...|+ +.+ ..||+|++| ++|++|+...|+||+||||..+..+-+ .+
T Consensus 43 ~g~~~f~l~~~n~dGtCKSa~~~~sDLe~l~~~t-~~IR~Y~sDCn~le~v~pAa~~~g~kv~lGiw~tdd~~~~--~~- 118 (305)
T COG5309 43 SGFLAFTLGPYNDDGTCKSADQVASDLELLASYT-HSIRTYGSDCNTLENVLPAAEASGFKVFLGIWPTDDIHDA--VE- 118 (305)
T ss_pred ccccceeccccCCCCCCcCHHHHHhHHHHhccCC-ceEEEeeccchhhhhhHHHHHhcCceEEEEEeeccchhhh--HH-
Confidence 35689999999875 899999966554 444 399999987 679999999999999999986543322 22
Q ss_pred HHHHHHhhccccccCCcceEEEEEecccccccCCCchhhhchHHHHHHHHHHHHHcCCCCCceEeccccccccCCCCCCC
Q 047337 98 AASWVYANVSSYFYTGGVNIKYVAVGNEPFLRTYNDTYRYITLPALKNIQQALNDAGLGSKIKATVPFNADIYNSPESNP 177 (490)
Q Consensus 98 A~~Wv~~~V~~~~p~~~~~I~~I~VGNEvl~~~~~~~~~~~lv~am~ni~~aL~~~gl~~~IkVsT~~~~~vl~~s~p~~ 177 (490)
+-++..+.+++ +++.|++|+||||+|+++ .-.+++|+.+|..+|.+|+++|++ +||+|++++.++.+.
T Consensus 119 --~til~ay~~~~--~~d~v~~v~VGnEal~r~--~~tasql~~~I~~vrsav~~agy~--gpV~T~dsw~~~~~n---- 186 (305)
T COG5309 119 --KTILSAYLPYN--GWDDVTTVTVGNEALNRN--DLTASQLIEYIDDVRSAVKEAGYD--GPVTTVDSWNVVINN---- 186 (305)
T ss_pred --HHHHHHHhccC--CCCceEEEEechhhhhcC--CCCHHHHHHHHHHHHHHHHhcCCC--CceeecccceeeeCC----
Confidence 12455577776 459999999999999752 333789999999999999999996 578999998887752
Q ss_pred CCCCcccccchhhhHHHHHHHHhhcCCceeeecCCcccccCCCCcCcccccccCCCccccCCCccchhhHHhhhhHHHHH
Q 047337 178 VPSAGGFRDEVKDLTIGIIQFLHLNNAPFTVNIYPFLSLYGNDYFPVDFAFFEGTNKPIRDGSLLYTNVFDANFDTLVWS 257 (490)
Q Consensus 178 ~Ps~g~F~~~~~~~~~~~l~fL~~~~s~~~vNiyPyf~~~~~~~~~l~yA~f~~~~~~~~d~~~~Y~nlfda~vdav~~a 257 (490)
|. |.++.|++|+|.||||+.... .++.+ .+|-.|++-++.+
T Consensus 187 -p~------------------l~~~SDfia~N~~aYwd~~~~----------------a~~~~----~f~~~q~e~vqsa 227 (305)
T COG5309 187 -PE------------------LCQASDFIAANAHAYWDGQTV----------------ANAAG----TFLLEQLERVQSA 227 (305)
T ss_pred -hH------------------Hhhhhhhhhcccchhccccch----------------hhhhh----HHHHHHHHHHHHh
Confidence 22 445567889999999975322 12222 4554557666554
Q ss_pred HHHcCCCCceEEEcccccCCCCCCC----CCHHHHHHHHHHHHHHHHhCCCCCCCCCCccEEEeeccccccccCCCCCcc
Q 047337 258 LDKAGYPDMHIIVGEVGWPTDGDKN----ANIENAKKFSQGLLKHVLSGAGTPARKGTIDVYLFSLLDENAKSIAPGNFE 333 (490)
Q Consensus 258 ~~k~g~~~~~vvVtETGWPS~G~~~----aS~~Na~~y~~~lv~~~~s~~Gtp~rp~~~~~y~F~~FDE~wK~~~~g~~E 333 (490)
.| .+|++||+||||||+|..+ ||++||+.|++++++.+++. +.++|+||+|||+||....-++|
T Consensus 228 ---~g-~~k~~~v~EtGWPS~G~~~G~a~pS~anq~~~~~~i~~~~~~~--------G~d~fvfeAFdd~WK~~~~y~VE 295 (305)
T COG5309 228 ---CG-TKKTVWVTETGWPSDGRTYGSAVPSVANQKIAVQEILNALRSC--------GYDVFVFEAFDDDWKADGSYGVE 295 (305)
T ss_pred ---cC-CCccEEEeeccCCCCCCccCCcCCChhHHHHHHHHHHhhhhcc--------CccEEEeeeccccccCccccchh
Confidence 23 4599999999999999875 99999999999999887643 78999999999999985433799
Q ss_pred ceeEeeecCC
Q 047337 334 RHWGIFEYDG 343 (490)
Q Consensus 334 ~~wGlf~~d~ 343 (490)
+|||+++.|+
T Consensus 296 kywGv~~s~~ 305 (305)
T COG5309 296 KYWGVLSSDR 305 (305)
T ss_pred hceeeeccCC
Confidence 9999998774
No 3
>smart00768 X8 Possibly involved in carbohydrate binding. The X8 domain, which may be involved in carbohydrate binding, is found in an Olive pollen antigen as well as at the C terminus of family 17 glycosyl hydrolases. It contains 6 conserved cysteine residues which presumably form three disulfide bridges.
Probab=99.94 E-value=3.3e-27 Score=196.66 Aligned_cols=83 Identities=51% Similarity=0.918 Sum_probs=80.6
Q ss_pred eeEEecCCCCCccchhhhhhccccc-ccccccCCCCCCCC-CCcchhhhHHHhHHhhhcCCCCCCCCCCCeeEEEcCCCC
Q 047337 372 RWCVLNPHADDFEELPDSIDYACSL-SDCTALGYGSSCNH-LTVEGNASYAFNMYYQMNSQESWNCDFSGLAMVTDGDPS 449 (490)
Q Consensus 372 ~wCV~k~~~~~~~~l~~~l~~aCg~-~dC~~I~~~g~c~~-~~~~~~aSya~N~Yyq~~~~~~~aCdF~G~a~i~~~dps 449 (490)
+|||+|+++ ++++|+++|||||++ +||++|++||+||. |++++|||||||+|||++++.+++|||+|+|++++.|||
T Consensus 1 ~wCv~~~~~-~~~~l~~~~~yaCg~~~dC~~I~~~g~c~~~~~~~~~aS~a~N~YYq~~~~~~~aC~F~G~a~~~~~~ps 79 (85)
T smart00768 1 LWCVAKPDA-DEAALQAALDYACGQGADCTAIQPGGSCYSPNTVKAHASYAFNSYYQKQGQSSGACDFGGTATITTTDPS 79 (85)
T ss_pred CccccCCCC-CHHHHHHHHHHHhcCCCCccccCCCCcccCCCCHHHHHHHHHHHHHHHcCCCCCcCCCCCceEEEecCCC
Confidence 599999999 999999999999999 99999999999999 889999999999999999999999999999999999999
Q ss_pred CCCccc
Q 047337 450 DDHCQF 455 (490)
Q Consensus 450 ~~~C~~ 455 (490)
+++|+|
T Consensus 80 ~~~C~~ 85 (85)
T smart00768 80 TGSCKF 85 (85)
T ss_pred CCccCC
Confidence 999986
No 4
>PF07983 X8: X8 domain; InterPro: IPR012946 The X8 domain [] contains 6 conserved cysteine residues that presumably form three disulphide bridges. The domain is found in an Olive pollen allergen [] as well as at the C terminus of family 17 glycosyl hydrolases []. This domain may be involved in carbohydrate binding.; PDB: 2JON_A 2W61_A 2W62_A 2W63_A.
Probab=99.83 E-value=2e-21 Score=159.20 Aligned_cols=70 Identities=43% Similarity=0.770 Sum_probs=60.2
Q ss_pred eeEEecCCCCCccchhhhhhccccc--ccccccCCCCCCCC------CCcchhhhHHHhHHhhhcCCCCCCCCCCCeeE
Q 047337 372 RWCVLNPHADDFEELPDSIDYACSL--SDCTALGYGSSCNH------LTVEGNASYAFNMYYQMNSQESWNCDFSGLAM 442 (490)
Q Consensus 372 ~wCV~k~~~~~~~~l~~~l~~aCg~--~dC~~I~~~g~c~~------~~~~~~aSya~N~Yyq~~~~~~~aCdF~G~a~ 442 (490)
+|||++|++ ++++|+++|||||++ +||++|++||+.|. |+.++|||||||+|||++++.+.+|||+|+||
T Consensus 1 l~Cv~~~~~-~~~~l~~~l~~aC~~~~~dC~~I~~~g~~G~YG~~S~C~~~~~lSya~N~YY~~~~~~~~~C~F~G~at 78 (78)
T PF07983_consen 1 LWCVAKPDA-DDKELQDLLDYACGQGGVDCSPIQPNGTTGVYGAYSMCSPRQHLSYAFNQYYQKQGRNSSACDFSGNAT 78 (78)
T ss_dssp -EEEE-TTS--HHHHHHHHHHHTTT-SSSCCCC-EETTTTEE-TTTTS-CCHHHHHHHHHHHHHHTSSCCG-SS-STEE
T ss_pred CcceeCCCC-CHHHHHHHHHHHHcCCCCChhhhCCCCcccccccccCCCHHHHHHHHHHHHHHHcCCCCCcCCCCCCCC
Confidence 699999999 999999999999999 99999999999653 88899999999999999999999999999996
No 5
>PF03198 Glyco_hydro_72: Glucanosyltransferase; InterPro: IPR004886 This family is a group of yeast glycolipid proteins anchored to the membrane. It includes Candida albicans (Yeast) pH-regulated protein, which is required for apical growth and plays a role in morphogenesis and Saccharomyces cerevisiae glycolipid anchored surface protein.; PDB: 2W61_A 2W62_A 2W63_A.
Probab=99.30 E-value=3.5e-11 Score=121.49 Aligned_cols=196 Identities=18% Similarity=0.276 Sum_probs=102.6
Q ss_pred eeeEEecCCCC-------CCCCHHHH----HHHHHhCCCCeEEeccCCh-----HHHHHHhcCCCEEEEeccCccccccc
Q 047337 29 GVGVNWGTMST-------HHLPADNV----VQMLRENRFNKLKLFEADK-----KILDALIGSDIEVMLAIPNYMLLEMS 92 (490)
Q Consensus 29 ~~GvnYg~~~~-------n~ps~~~v----v~llk~~~i~~VRlY~~d~-----~vL~A~~~tgi~V~lGV~n~~~~~la 92 (490)
..||.|-+-++ |..+-.++ +.+||++|++.||+|..|| ..+++|++.||-|++.|... ..+|.
T Consensus 29 ikGVaYQp~~~~~~~~~~DPLad~~~C~rDi~~l~~LgiNtIRVY~vdp~~nHd~CM~~~~~aGIYvi~Dl~~p-~~sI~ 107 (314)
T PF03198_consen 29 IKGVAYQPGGSSEPSNYIDPLADPEACKRDIPLLKELGINTIRVYSVDPSKNHDECMSAFADAGIYVILDLNTP-NGSIN 107 (314)
T ss_dssp EEEEE----------SS--GGG-HHHHHHHHHHHHHHT-SEEEES---TTS--HHHHHHHHHTT-EEEEES-BT-TBS--
T ss_pred EeeEEcccCCCCCCccCcCcccCHHHHHHhHHHHHHcCCCEEEEEEeCCCCCHHHHHHHHHhCCCEEEEecCCC-Ccccc
Confidence 46999998665 22222233 5689999999999999883 68999999999999999876 33454
Q ss_pred CCHHHHHHH-------HHhhccccccCCcceEEEEEecccccccCCCchhhhchHHHHHHHHHHHHHcCCCCCceEeccc
Q 047337 93 EDPGAAASW-------VYANVSSYFYTGGVNIKYVAVGNEPFLRTYNDTYRYITLPALKNIQQALNDAGLGSKIKATVPF 165 (490)
Q Consensus 93 ~~~~aA~~W-------v~~~V~~~~p~~~~~I~~I~VGNEvl~~~~~~~~~~~lv~am~ni~~aL~~~gl~~~IkVsT~~ 165 (490)
+.. -+..| ...-|..+... +|+-+..+|||+++.......++.+-.+++++|+.+++.++ ++|+|+-+-
T Consensus 108 r~~-P~~sw~~~l~~~~~~vid~fa~Y--~N~LgFf~GNEVin~~~~t~aap~vKAavRD~K~Yi~~~~~-R~IPVGYsa 183 (314)
T PF03198_consen 108 RSD-PAPSWNTDLLDRYFAVIDAFAKY--DNTLGFFAGNEVINDASNTNAAPYVKAAVRDMKAYIKSKGY-RSIPVGYSA 183 (314)
T ss_dssp TTS-------HHHHHHHHHHHHHHTT---TTEEEEEEEESSS-STT-GGGHHHHHHHHHHHHHHHHHSSS-----EEEEE
T ss_pred CCC-CcCCCCHHHHHHHHHHHHHhccC--CceEEEEecceeecCCCCcccHHHHHHHHHHHHHHHHhcCC-CCCceeEEc
Confidence 332 12334 22224444332 89999999999997542333467889999999999999998 569998663
Q ss_pred cccccCCCCCCCCCCCcccccchhhhHHHHHHHHh-----hcCCceeeecCCcccccCCCCcCcccccccCCCccccCCC
Q 047337 166 NADIYNSPESNPVPSAGGFRDEVKDLTIGIIQFLH-----LNNAPFTVNIYPFLSLYGNDYFPVDFAFFEGTNKPIRDGS 240 (490)
Q Consensus 166 ~~~vl~~s~p~~~Ps~g~F~~~~~~~~~~~l~fL~-----~~~s~~~vNiyPyf~~~~~~~~~l~yA~f~~~~~~~~d~~ 240 (490)
+ |+ .+....+.+||. +..|.+++|.|-|... . .|+. .|
T Consensus 184 a-D~-------------------~~~r~~~a~Yl~Cg~~~~~iDf~g~N~Y~WCg~---S-------tf~~-------SG 226 (314)
T PF03198_consen 184 A-DD-------------------AEIRQDLANYLNCGDDDERIDFFGLNSYEWCGD---S-------TFET-------SG 226 (314)
T ss_dssp -----------------------TTTHHHHHHHTTBTT-----S-EEEEE----SS------------HHH-------HS
T ss_pred c-CC-------------------hhHHHHHHHHhcCCCcccccceeeeccceecCC---C-------cccc-------cc
Confidence 2 11 112345666763 4668999999987642 1 1221 11
Q ss_pred ccchhhHHhhhhHHHHHHHHcCCCCceEEEcccccCCCC
Q 047337 241 LLYTNVFDANFDTLVWSLDKAGYPDMHIIVGEVGWPTDG 279 (490)
Q Consensus 241 ~~Y~nlfda~vdav~~a~~k~g~~~~~vvVtETGWPS~G 279 (490)
|..+ ....+ ++ .+||+.+|.|.-+..
T Consensus 227 --y~~l--------~~~f~--~y-~vPvffSEyGCn~~~ 252 (314)
T PF03198_consen 227 --YDRL--------TKEFS--NY-SVPVFFSEYGCNTVT 252 (314)
T ss_dssp --HHHH--------HHHHT--T--SS-EEEEEE---SSS
T ss_pred --HHHH--------HHHhh--CC-CCCeEEcccCCCCCC
Confidence 3222 22222 33 599999999998653
No 6
>PF07745 Glyco_hydro_53: Glycosyl hydrolase family 53; InterPro: IPR011683 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This domain is found in family 53 of the glycosyl hydrolase classification []. These enzymes are endo-1,4- beta-galactanases (3.2.1.89 from EC). The structure of this domain is known [] and has a TIM barrel fold.; GO: 0015926 glucosidase activity; PDB: 1HJQ_A 1HJS_A 1HJU_B 1FHL_A 1FOB_A 2GFT_A 1UR4_B 1UR0_A 1R8L_B 2CCR_A ....
Probab=98.90 E-value=6.5e-08 Score=99.77 Aligned_cols=247 Identities=17% Similarity=0.223 Sum_probs=124.7
Q ss_pred HHHHHHHHHhCCCCeEEe--cc-------CC-hHH---HHHHhcCCCEEEEeccCcc---------cc-cccC-CH----
Q 047337 44 ADNVVQMLRENRFNKLKL--FE-------AD-KKI---LDALIGSDIEVMLAIPNYM---------LL-EMSE-DP---- 95 (490)
Q Consensus 44 ~~~vv~llk~~~i~~VRl--Y~-------~d-~~v---L~A~~~tgi~V~lGV~n~~---------~~-~la~-~~---- 95 (490)
..++.++||.+|++.||| |. .| ..+ .+.+++.||+|+|..--+| ++ .... +.
T Consensus 26 ~~d~~~ilk~~G~N~vRlRvwv~P~~~g~~~~~~~~~~akrak~~Gm~vlldfHYSD~WaDPg~Q~~P~aW~~~~~~~l~ 105 (332)
T PF07745_consen 26 EKDLFQILKDHGVNAVRLRVWVNPYDGGYNDLEDVIALAKRAKAAGMKVLLDFHYSDFWADPGKQNKPAAWANLSFDQLA 105 (332)
T ss_dssp B--HHHHHHHTT--EEEEEE-SS-TTTTTTSHHHHHHHHHHHHHTT-EEEEEE-SSSS--BTTB-B--TTCTSSSHHHHH
T ss_pred CCCHHHHHHhcCCCeEEEEeccCCcccccCCHHHHHHHHHHHHHCCCeEEEeecccCCCCCCCCCCCCccCCCCCHHHHH
Confidence 367899999999876665 42 12 233 4555689999999987643 11 1111 11
Q ss_pred HHHHHHHHhhccccccCCcceEEEEEeccccccc--CC--CchhhhchHHHHHHHHHHHHHcCCCCCceEeccccccccC
Q 047337 96 GAAASWVYANVSSYFYTGGVNIKYVAVGNEPFLR--TY--NDTYRYITLPALKNIQQALNDAGLGSKIKATVPFNADIYN 171 (490)
Q Consensus 96 ~aA~~Wv~~~V~~~~p~~~~~I~~I~VGNEvl~~--~~--~~~~~~~lv~am~ni~~aL~~~gl~~~IkVsT~~~~~vl~ 171 (490)
++..++.++-+. .+.+.+..++.|-||||.-.. +. +..-.+.+...++...+++|+.. .++||-.-. .
T Consensus 106 ~~v~~yT~~vl~-~l~~~G~~pd~VQVGNEin~Gmlwp~g~~~~~~~~a~ll~ag~~AVr~~~--p~~kV~lH~-----~ 177 (332)
T PF07745_consen 106 KAVYDYTKDVLQ-ALKAAGVTPDMVQVGNEINNGMLWPDGKPSNWDNLAKLLNAGIKAVREVD--PNIKVMLHL-----A 177 (332)
T ss_dssp HHHHHHHHHHHH-HHHHTT--ESEEEESSSGGGESTBTTTCTT-HHHHHHHHHHHHHHHHTHS--STSEEEEEE-----S
T ss_pred HHHHHHHHHHHH-HHHHCCCCccEEEeCccccccccCcCCCccCHHHHHHHHHHHHHHHHhcC--CCCcEEEEE-----C
Confidence 223333333222 233345778899999997432 11 11224556666666777777754 346653221 1
Q ss_pred CCCCCCCCCCcccccchhhhHHHHHHHHhhcC---CceeeecCCcccccCCCCcCcccccccCCCccccCCCccchhhHH
Q 047337 172 SPESNPVPSAGGFRDEVKDLTIGIIQFLHLNN---APFTVNIYPFLSLYGNDYFPVDFAFFEGTNKPIRDGSLLYTNVFD 248 (490)
Q Consensus 172 ~s~p~~~Ps~g~F~~~~~~~~~~~l~fL~~~~---s~~~vNiyPyf~~~~~~~~~l~yA~f~~~~~~~~d~~~~Y~nlfd 248 (490)
+ |.. .+.++.+.+.|...+ |.++++.||||... -+-+.
T Consensus 178 ~------~~~-------~~~~~~~f~~l~~~g~d~DviGlSyYP~w~~~--------------------------l~~l~ 218 (332)
T PF07745_consen 178 N------GGD-------NDLYRWFFDNLKAAGVDFDVIGLSYYPFWHGT--------------------------LEDLK 218 (332)
T ss_dssp -------TTS-------HHHHHHHHHHHHHTTGG-SEEEEEE-STTST---------------------------HHHHH
T ss_pred C------CCc-------hHHHHHHHHHHHhcCCCcceEEEecCCCCcch--------------------------HHHHH
Confidence 1 110 123344555554433 78999999998530 02222
Q ss_pred hhhhHHHHHHHHcCCCCceEEEcccccCCCCCC-----------------CCCHHHHHHHHHHHHHHHHhCCCCCCCCCC
Q 047337 249 ANFDTLVWSLDKAGYPDMHIIVGEVGWPTDGDK-----------------NANIENAKKFSQGLLKHVLSGAGTPARKGT 311 (490)
Q Consensus 249 a~vdav~~a~~k~g~~~~~vvVtETGWPS~G~~-----------------~aS~~Na~~y~~~lv~~~~s~~Gtp~rp~~ 311 (490)
..++.+ .++. +|+|+|.|||||..-.. .+|++.|+.|++++++.+.+-.+ -++
T Consensus 219 ~~l~~l---~~ry---~K~V~V~Et~yp~t~~d~D~~~n~~~~~~~~~~yp~t~~GQ~~~l~~l~~~v~~~p~----~~g 288 (332)
T PF07745_consen 219 NNLNDL---ASRY---GKPVMVVETGYPWTLDDGDGTGNIIGATSLISGYPATPQGQADFLRDLINAVKNVPN----GGG 288 (332)
T ss_dssp HHHHHH---HHHH---T-EEEEEEE---SBS--SSSS--SSSSSTGGTTS-SSHHHHHHHHHHHHHHHHTS------TTE
T ss_pred HHHHHH---HHHh---CCeeEEEeccccccccccccccccCccccccCCCCCCHHHHHHHHHHHHHHHHHhcc----CCe
Confidence 333322 2343 58999999999998111 16899999999999998876311 014
Q ss_pred ccEEEeecc-ccc---cccCCCC-CccceeEeeecCCceeeee
Q 047337 312 IDVYLFSLL-DEN---AKSIAPG-NFERHWGIFEYDGKPKYEL 349 (490)
Q Consensus 312 ~~~y~F~~F-DE~---wK~~~~g-~~E~~wGlf~~d~~~ky~l 349 (490)
.-+|+-|.- -.. |+.. .| .+|.. +||+.+|++--.|
T Consensus 289 ~GvfYWeP~w~~~~~~~~~~-~g~~w~n~-~lFD~~g~~l~sl 329 (332)
T PF07745_consen 289 LGVFYWEPAWIPVENGWDWG-GGSSWDNQ-ALFDFNGNALPSL 329 (332)
T ss_dssp EEEEEE-TT-GGGTTHHHHT-TTSSSSBG-SSB-TTSBB-GGG
T ss_pred EEEEeeccccccCCcccccC-CCCCcccc-ccCCCCCCCchHh
Confidence 555555432 111 1111 22 34443 8888888765443
No 7
>COG3867 Arabinogalactan endo-1,4-beta-galactosidase [Carbohydrate transport and metabolism]
Probab=98.36 E-value=5.9e-06 Score=82.81 Aligned_cols=206 Identities=17% Similarity=0.227 Sum_probs=112.2
Q ss_pred HHHHHHHHHhCCCCeEEe--c----cCC-----------h---HHHHHHhcCCCEEEEeccCcccccccCCHHHHHHHH-
Q 047337 44 ADNVVQMLRENRFNKLKL--F----EAD-----------K---KILDALIGSDIEVMLAIPNYMLLEMSEDPGAAASWV- 102 (490)
Q Consensus 44 ~~~vv~llk~~~i~~VRl--Y----~~d-----------~---~vL~A~~~tgi~V~lGV~n~~~~~la~~~~aA~~Wv- 102 (490)
.+++.+.||.+|++.||| | |.| . ++-+-+++.||||++..--+|.=.-...+..-.+|.
T Consensus 65 ~qD~~~iLK~~GvNyvRlRvwndP~dsngn~yggGnnD~~k~ieiakRAk~~GmKVl~dFHYSDfwaDPakQ~kPkaW~~ 144 (403)
T COG3867 65 RQDALQILKNHGVNYVRLRVWNDPYDSNGNGYGGGNNDLKKAIEIAKRAKNLGMKVLLDFHYSDFWADPAKQKKPKAWEN 144 (403)
T ss_pred HHHHHHHHHHcCcCeEEEEEecCCccCCCCccCCCcchHHHHHHHHHHHHhcCcEEEeeccchhhccChhhcCCcHHhhh
Confidence 456789999999876665 4 443 1 334455689999999887654210000111112342
Q ss_pred ------Hhhc-------cccccCCcceEEEEEeccccccc--CCCchh--hhchHHHHHHHHHHHHHcCCCCCceEeccc
Q 047337 103 ------YANV-------SSYFYTGGVNIKYVAVGNEPFLR--TYNDTY--RYITLPALKNIQQALNDAGLGSKIKATVPF 165 (490)
Q Consensus 103 ------~~~V-------~~~~p~~~~~I~~I~VGNEvl~~--~~~~~~--~~~lv~am~ni~~aL~~~gl~~~IkVsT~~ 165 (490)
+..| .....+.+..+..|-||||.-.. ++.++. ...+..-++.-.+++|... ..|||---
T Consensus 145 l~fe~lk~avy~yTk~~l~~m~~eGi~pdmVQVGNEtn~gflwp~Ge~~~f~k~a~L~n~g~~avrev~--p~ikv~lH- 221 (403)
T COG3867 145 LNFEQLKKAVYSYTKYVLTTMKKEGILPDMVQVGNETNGGFLWPDGEGRNFDKMAALLNAGIRAVREVS--PTIKVALH- 221 (403)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHcCCCccceEeccccCCceeccCCCCcChHHHHHHHHHHhhhhhhcC--CCceEEEE-
Confidence 2222 22223345678889999997532 111221 2233333344445555533 34666332
Q ss_pred cccccCCCCCCCCCCCcccccchhhhHHHHHHHHhhcC---CceeeecCCcccccCCCCcCcccccccCCCccccCCCcc
Q 047337 166 NADIYNSPESNPVPSAGGFRDEVKDLTIGIIQFLHLNN---APFTVNIYPFLSLYGNDYFPVDFAFFEGTNKPIRDGSLL 242 (490)
Q Consensus 166 ~~~vl~~s~p~~~Ps~g~F~~~~~~~~~~~l~fL~~~~---s~~~vNiyPyf~~~~~~~~~l~yA~f~~~~~~~~d~~~~ 242 (490)
|.+ | --.+.|| .+.+-|.+.+ |.|+.--||||...-+ .++
T Consensus 222 ----la~--g---~~n~~y~--------~~fd~ltk~nvdfDVig~SyYpyWhgtl~--------------------nL~ 264 (403)
T COG3867 222 ----LAE--G---ENNSLYR--------WIFDELTKRNVDFDVIGSSYYPYWHGTLN--------------------NLT 264 (403)
T ss_pred ----ecC--C---CCCchhh--------HHHHHHHHcCCCceEEeeeccccccCcHH--------------------HHH
Confidence 121 1 1123343 3333343433 5688999999864211 111
Q ss_pred chhhHHhhhhHHHHHHHHcCCCCceEEEccccc--------------CCCCCCC---CCHHHHHHHHHHHHHHHHh
Q 047337 243 YTNVFDANFDTLVWSLDKAGYPDMHIIVGEVGW--------------PTDGDKN---ANIENAKKFSQGLLKHVLS 301 (490)
Q Consensus 243 Y~nlfda~vdav~~a~~k~g~~~~~vvVtETGW--------------PS~G~~~---aS~~Na~~y~~~lv~~~~s 301 (490)
+ | ++.+.. + =+|.|+|.||+. |+.+... .+++-|++|.+++|+.+..
T Consensus 265 ~-n-----l~dia~---r---Y~K~VmV~Etay~yTlEdgDg~~Nt~~~~~~t~~ypitVQGQat~vrDvie~V~n 328 (403)
T COG3867 265 T-N-----LNDIAS---R---YHKDVMVVETAYTYTLEDGDGHENTFPSSEQTGGYPITVQGQATFVRDVIEAVKN 328 (403)
T ss_pred h-H-----HHHHHH---H---hcCeEEEEEecceeeeccCCCCCCcCCcccccCCCceEEechhhHHHHHHHHHHh
Confidence 1 2 222211 1 258999999998 6666442 7889999999999998864
No 8
>PRK10150 beta-D-glucuronidase; Provisional
Probab=98.06 E-value=0.0011 Score=73.93 Aligned_cols=258 Identities=15% Similarity=0.043 Sum_probs=137.6
Q ss_pred eeeEEecCCCC---CCCCHHH---HHHHHHhCCCCeEEecc--CChHHHHHHhcCCCEEEEeccCcc-------------
Q 047337 29 GVGVNWGTMST---HHLPADN---VVQMLRENRFNKLKLFE--ADKKILDALIGSDIEVMLAIPNYM------------- 87 (490)
Q Consensus 29 ~~GvnYg~~~~---n~ps~~~---vv~llk~~~i~~VRlY~--~d~~vL~A~~~tgi~V~lGV~n~~------------- 87 (490)
..|+|+=.... .-++.+. .++++|..|++.||+-. .++..+.++.+.||-|+.=++...
T Consensus 294 lrG~~~h~~~~~~G~a~~~~~~~~d~~l~K~~G~N~vR~sh~p~~~~~~~~cD~~GllV~~E~p~~~~~~~~~~~~~~~~ 373 (604)
T PRK10150 294 FKGFGKHEDADIRGKGLDEVLNVHDHNLMKWIGANSFRTSHYPYSEEMLDLADRHGIVVIDETPAVGLNLSFGAGLEAGN 373 (604)
T ss_pred EEeeeccCCCCccCCcCCHHHHHHHHHHHHHCCCCEEEeccCCCCHHHHHHHHhcCcEEEEecccccccccccccccccc
Confidence 34887642211 1234443 36678999999999932 357899999999999886553210
Q ss_pred --ccccc------CCHHHHHHHHHhhccccccCCcceEEEEEecccccccCCCchhhhchHHHHHHHHHHHHHcCCCCCc
Q 047337 88 --LLEMS------EDPGAAASWVYANVSSYFYTGGVNIKYVAVGNEPFLRTYNDTYRYITLPALKNIQQALNDAGLGSKI 159 (490)
Q Consensus 88 --~~~la------~~~~aA~~Wv~~~V~~~~p~~~~~I~~I~VGNEvl~~~~~~~~~~~lv~am~ni~~aL~~~gl~~~I 159 (490)
.+... +..++..+-+++.|..+... -.|..=++|||.-.. . ......++.+.+.+++..=++
T Consensus 374 ~~~~~~~~~~~~~~~~~~~~~~~~~mv~r~~NH--PSIi~Ws~gNE~~~~---~---~~~~~~~~~l~~~~k~~DptR-- 443 (604)
T PRK10150 374 KPKETYSEEAVNGETQQAHLQAIRELIARDKNH--PSVVMWSIANEPASR---E---QGAREYFAPLAELTRKLDPTR-- 443 (604)
T ss_pred cccccccccccchhHHHHHHHHHHHHHHhccCC--ceEEEEeeccCCCcc---c---hhHHHHHHHHHHHHHhhCCCC--
Confidence 00111 01122223355556655322 457788999996421 1 112344455555665555333
Q ss_pred eEeccccccccCCCCCCCCCCCcccccchhhhHHHHHHHHhhcCCceeeecCCcccccCCCCcCcccccccCCCccccCC
Q 047337 160 KATVPFNADIYNSPESNPVPSAGGFRDEVKDLTIGIIQFLHLNNAPFTVNIYPFLSLYGNDYFPVDFAFFEGTNKPIRDG 239 (490)
Q Consensus 160 kVsT~~~~~vl~~s~p~~~Ps~g~F~~~~~~~~~~~l~fL~~~~s~~~vNiyPyf~~~~~~~~~l~yA~f~~~~~~~~d~ 239 (490)
+|+....+ .. . |... -+.+..|.+..|.|+ .+..+.. + ..
T Consensus 444 ~vt~~~~~---~~-~----~~~~---------------~~~~~~Dv~~~N~Y~--~wy~~~~---~----------~~-- 483 (604)
T PRK10150 444 PVTCVNVM---FA-T----PDTD---------------TVSDLVDVLCLNRYY--GWYVDSG---D----------LE-- 483 (604)
T ss_pred ceEEEecc---cC-C----cccc---------------cccCcccEEEEcccc--eecCCCC---C----------HH--
Confidence 23333211 00 0 1100 012234667888865 2221110 0 00
Q ss_pred CccchhhHHhhhhHHHHHHHHcCCCCceEEEcccccCCCC------CCCCCHHHHHHHHHHHHHHHHhCCCCCCCCCCcc
Q 047337 240 SLLYTNVFDANFDTLVWSLDKAGYPDMHIIVGEVGWPTDG------DKNANIENAKKFSQGLLKHVLSGAGTPARKGTID 313 (490)
Q Consensus 240 ~~~Y~nlfda~vdav~~a~~k~g~~~~~vvVtETGWPS~G------~~~aS~~Na~~y~~~lv~~~~s~~Gtp~rp~~~~ 313 (490)
.....|+..++.. .++ + +||++|+|.|+.+.- ...-|.+.|..|++...+.+.+ +|.-.-
T Consensus 484 --~~~~~~~~~~~~~---~~~--~-~kP~~isEyg~~~~~~~h~~~~~~~~ee~q~~~~~~~~~~~~~------~p~~~G 549 (604)
T PRK10150 484 --TAEKVLEKELLAW---QEK--L-HKPIIITEYGADTLAGLHSMYDDMWSEEYQCAFLDMYHRVFDR------VPAVVG 549 (604)
T ss_pred --HHHHHHHHHHHHH---HHh--c-CCCEEEEccCCccccccccCCCCCCCHHHHHHHHHHHHHHHhc------CCceEE
Confidence 0112233333221 111 2 799999999976521 1125788888888877766543 344566
Q ss_pred EEEeeccccccccCCCCCccceeEeeecCCceeeeee
Q 047337 314 VYLFSLLDENAKSIAPGNFERHWGIFEYDGKPKYELD 350 (490)
Q Consensus 314 ~y~F~~FDE~wK~~~~g~~E~~wGlf~~d~~~ky~l~ 350 (490)
.|+..+||-.........-..+.||++.||+||-..-
T Consensus 550 ~~iW~~~D~~~~~g~~~~~g~~~Gl~~~dr~~k~~~~ 586 (604)
T PRK10150 550 EQVWNFADFATSQGILRVGGNKKGIFTRDRQPKSAAF 586 (604)
T ss_pred EEEEeeeccCCCCCCcccCCCcceeEcCCCCChHHHH
Confidence 8899999955442110001247899999999997654
No 9
>PF00150 Cellulase: Cellulase (glycosyl hydrolase family 5); InterPro: IPR001547 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 5 GH5 from CAZY comprises enzymes with several known activities; endoglucanase (3.2.1.4 from EC); beta-mannanase (3.2.1.78 from EC); exo-1,3-glucanase (3.2.1.58 from EC); endo-1,6-glucanase (3.2.1.75 from EC); xylanase (3.2.1.8 from EC); endoglycoceramidase (3.2.1.123 from EC). The microbial degradation of cellulose and xylans requires several types of enzymes. Fungi and bacteria produces a spectrum of cellulolytic enzymes (cellulases) and xylanases which, on the basis of sequence similarities, can be classified into families. One of these families is known as the cellulase family A [] or as the glycosyl hydrolases family 5 []. One of the conserved regions in this family contains a conserved glutamic acid residue which is potentially involved [] in the catalytic mechanism.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3NDY_A 3NDZ_B 1LF1_A 1TVP_B 1TVN_A 3AYR_A 3AYS_A 1QI0_A 1W3K_A 1OCQ_A ....
Probab=98.01 E-value=0.00076 Score=66.64 Aligned_cols=130 Identities=16% Similarity=0.084 Sum_probs=82.1
Q ss_pred eeeEEecCCCCCCCCHHHHHHHHHhCCCCeEEeccC-------------C-------hHHHHHHhcCCCEEEEeccCcc-
Q 047337 29 GVGVNWGTMSTHHLPADNVVQMLRENRFNKLKLFEA-------------D-------KKILDALIGSDIEVMLAIPNYM- 87 (490)
Q Consensus 29 ~~GvnYg~~~~n~ps~~~vv~llk~~~i~~VRlY~~-------------d-------~~vL~A~~~tgi~V~lGV~n~~- 87 (490)
..|+|-. ..++. ..++.++.+++.|++.|||.-. + ..+|+++++.||+|+|.+....
T Consensus 10 ~~G~n~~-w~~~~-~~~~~~~~~~~~G~n~VRi~v~~~~~~~~~~~~~~~~~~~~~ld~~v~~a~~~gi~vild~h~~~~ 87 (281)
T PF00150_consen 10 WRGFNTH-WYNPS-ITEADFDQLKALGFNTVRIPVGWEAYQEPNPGYNYDETYLARLDRIVDAAQAYGIYVILDLHNAPG 87 (281)
T ss_dssp EEEEEET-TSGGG-SHHHHHHHHHHTTESEEEEEEESTSTSTTSTTTSBTHHHHHHHHHHHHHHHHTT-EEEEEEEESTT
T ss_pred eeeeecc-cCCCC-CHHHHHHHHHHCCCCEEEeCCCHHHhcCCCCCccccHHHHHHHHHHHHHHHhCCCeEEEEeccCcc
Confidence 4566665 22212 6788899999999999999721 1 2588899999999999988741
Q ss_pred ---cccccCCHHHHHHHHHh---hccccccCCcceEEEEEecccccccCCC----chhhhchHHHHHHHHHHHHHcCCCC
Q 047337 88 ---LLEMSEDPGAAASWVYA---NVSSYFYTGGVNIKYVAVGNEPFLRTYN----DTYRYITLPALKNIQQALNDAGLGS 157 (490)
Q Consensus 88 ---~~~la~~~~aA~~Wv~~---~V~~~~p~~~~~I~~I~VGNEvl~~~~~----~~~~~~lv~am~ni~~aL~~~gl~~ 157 (490)
............+|+++ .|...+.+ ...|.++=+.||+...... ......+...++.+.+++|+.+-..
T Consensus 88 w~~~~~~~~~~~~~~~~~~~~~~~la~~y~~-~~~v~~~el~NEP~~~~~~~~w~~~~~~~~~~~~~~~~~~Ir~~~~~~ 166 (281)
T PF00150_consen 88 WANGGDGYGNNDTAQAWFKSFWRALAKRYKD-NPPVVGWELWNEPNGGNDDANWNAQNPADWQDWYQRAIDAIRAADPNH 166 (281)
T ss_dssp CSSSTSTTTTHHHHHHHHHHHHHHHHHHHTT-TTTTEEEESSSSGCSTTSTTTTSHHHTHHHHHHHHHHHHHHHHTTSSS
T ss_pred ccccccccccchhhHHHHHhhhhhhccccCC-CCcEEEEEecCCccccCCccccccccchhhhhHHHHHHHHHHhcCCcc
Confidence 11112233334444333 34444421 2457799999999864211 0113567888999999999998754
Q ss_pred CceE
Q 047337 158 KIKA 161 (490)
Q Consensus 158 ~IkV 161 (490)
.|-|
T Consensus 167 ~i~~ 170 (281)
T PF00150_consen 167 LIIV 170 (281)
T ss_dssp EEEE
T ss_pred eeec
Confidence 3433
No 10
>smart00633 Glyco_10 Glycosyl hydrolase family 10.
Probab=97.74 E-value=0.0018 Score=64.57 Aligned_cols=80 Identities=16% Similarity=0.162 Sum_probs=54.8
Q ss_pred HHHHHHHcCCCCceEEEcccccCCCCCCCCCHHHHHHHHHHHHHHHHhCCCCCCCCCCccEEEeecccc-ccccCCCCCc
Q 047337 254 LVWSLDKAGYPDMHIIVGEVGWPTDGDKNANIENAKKFSQGLLKHVLSGAGTPARKGTIDVYLFSLLDE-NAKSIAPGNF 332 (490)
Q Consensus 254 v~~a~~k~g~~~~~vvVtETGWPS~G~~~aS~~Na~~y~~~lv~~~~s~~Gtp~rp~~~~~y~F~~FDE-~wK~~~~g~~ 332 (490)
+...|++++-.++||+|||.+-|..+ +++.|+.+++++++.+.+. | .-...++..+.|. .|.+
T Consensus 171 ~~~~l~~~~~~g~pi~iTE~dv~~~~----~~~~qA~~~~~~l~~~~~~---p---~v~gi~~Wg~~d~~~W~~------ 234 (254)
T smart00633 171 IRAALDRFASLGLEIQITELDISGYP----NPQAQAADYEEVFKACLAH---P---AVTGVTVWGVTDKYSWLD------ 234 (254)
T ss_pred HHHHHHHHHHcCCceEEEEeecCCCC----cHHHHHHHHHHHHHHHHcC---C---CeeEEEEeCCccCCcccC------
Confidence 33444444444799999999998753 4588899999999988764 2 2234555566653 3553
Q ss_pred cceeEeeecCCceeeee
Q 047337 333 ERHWGIFEYDGKPKYEL 349 (490)
Q Consensus 333 E~~wGlf~~d~~~ky~l 349 (490)
+.+-|||+.|++||..+
T Consensus 235 ~~~~~L~d~~~~~kpa~ 251 (254)
T smart00633 235 GGAPLLFDANYQPKPAY 251 (254)
T ss_pred CCCceeECCCCCCChhh
Confidence 24679999999988643
No 11
>PF11790 Glyco_hydro_cc: Glycosyl hydrolase catalytic core; InterPro: IPR024655 This entry represents the glycosyl hydrolase catalytic core of a group of uncharacterised proteins.
Probab=96.76 E-value=0.042 Score=54.37 Aligned_cols=66 Identities=17% Similarity=0.216 Sum_probs=46.8
Q ss_pred ceEEEcccccCCCCCCCCCHHHHHHHHHHHHHHHHhCCCCCCCCCCccEEEeeccccccccCCCCCccceeEeeecCCc
Q 047337 266 MHIIVGEVGWPTDGDKNANIENAKKFSQGLLKHVLSGAGTPARKGTIDVYLFSLLDENAKSIAPGNFERHWGIFEYDGK 344 (490)
Q Consensus 266 ~~vvVtETGWPS~G~~~aS~~Na~~y~~~lv~~~~s~~Gtp~rp~~~~~y~F~~FDE~wK~~~~g~~E~~wGlf~~d~~ 344 (490)
|||+|||.|+.. +....+.+.++.|++..+..+.+. +.--.++||...+ .+. +...+-.|++.||+
T Consensus 166 kPIWITEf~~~~-~~~~~~~~~~~~fl~~~~~~ld~~------~~VeryawF~~~~-~~~-----~~~~~~~L~~~~G~ 231 (239)
T PF11790_consen 166 KPIWITEFGCWN-GGSQGSDEQQASFLRQALPWLDSQ------PYVERYAWFGFMN-DGS-----GVNPNSALLDADGS 231 (239)
T ss_pred CCEEEEeecccC-CCCCCCHHHHHHHHHHHHHHHhcC------CCeeEEEeccccc-ccC-----CCccccccccCCCC
Confidence 999999999876 445588999999999999888653 2245677888333 222 24555567777764
No 12
>PF02836 Glyco_hydro_2_C: Glycosyl hydrolases family 2, TIM barrel domain; InterPro: IPR006103 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 2 GH2 from CAZY comprises enzymes with several known activities; beta-galactosidase (3.2.1.23 from EC); beta-mannosidase (3.2.1.25 from EC); beta-glucuronidase (3.2.1.31 from EC). These enzymes contain a conserved glutamic acid residue which has been shown [], in Escherichia coli lacZ (P00722 from SWISSPROT), to be the general acid/base catalyst in the active site of the enzyme. Beta-galactosidase from E. coli has a TIM-barrel-like core surrounded by four other largely beta domains [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3CMG_A 3FN9_C 1YQ2_A 3K4D_B 3LPG_B 3LPF_A 3K4A_B 3K46_B 3GM8_A 3DEC_A ....
Probab=96.34 E-value=0.16 Score=51.54 Aligned_cols=96 Identities=21% Similarity=0.228 Sum_probs=55.6
Q ss_pred eeeEEecCCCCC---CCCHHHH---HHHHHhCCCCeEEecc--CChHHHHHHhcCCCEEEEeccCccc---ccc------
Q 047337 29 GVGVNWGTMSTH---HLPADNV---VQMLRENRFNKLKLFE--ADKKILDALIGSDIEVMLAIPNYML---LEM------ 91 (490)
Q Consensus 29 ~~GvnYg~~~~n---~ps~~~v---v~llk~~~i~~VRlY~--~d~~vL~A~~~tgi~V~lGV~n~~~---~~l------ 91 (490)
..|||+...... .++.+++ ++++|+.|++.||+.. .++..+.++.+.||-|+..++.... ...
T Consensus 17 l~Gv~~h~~~~~~g~a~~~~~~~~d~~l~k~~G~N~iR~~h~p~~~~~~~~cD~~GilV~~e~~~~~~~~~~~~~~~~~~ 96 (298)
T PF02836_consen 17 LRGVNRHQDYPGLGRAMPDEAMERDLELMKEMGFNAIRTHHYPPSPRFYDLCDELGILVWQEIPLEGHGSWQDFGNCNYD 96 (298)
T ss_dssp EEEEEE-S-BTTTBT---HHHHHHHHHHHHHTT-SEEEETTS--SHHHHHHHHHHT-EEEEE-S-BSCTSSSSTSCTSCT
T ss_pred EEEEeeCcCcccccccCCHHHHHHHHHHHHhcCcceEEcccccCcHHHHHHHhhcCCEEEEeccccccCccccCCccccC
Confidence 469998864332 3445544 5578899999999964 3579999999999999988876211 111
Q ss_pred cCCH---HHHHHHHHhhccccccCCcceEEEEEecccc
Q 047337 92 SEDP---GAAASWVYANVSSYFYTGGVNIKYVAVGNEP 126 (490)
Q Consensus 92 a~~~---~aA~~Wv~~~V~~~~p~~~~~I~~I~VGNEv 126 (490)
..++ +.+.+.+++.|..+... -.|..=.+|||.
T Consensus 97 ~~~~~~~~~~~~~~~~~v~~~~NH--PSIi~W~~gNE~ 132 (298)
T PF02836_consen 97 ADDPEFRENAEQELREMVRRDRNH--PSIIMWSLGNES 132 (298)
T ss_dssp TTSGGHHHHHHHHHHHHHHHHTT---TTEEEEEEEESS
T ss_pred CCCHHHHHHHHHHHHHHHHcCcCc--CchheeecCccC
Confidence 1122 22333455556555322 457678899998
No 13
>TIGR03356 BGL beta-galactosidase.
Probab=94.80 E-value=7.2 Score=42.06 Aligned_cols=79 Identities=16% Similarity=0.290 Sum_probs=48.7
Q ss_pred HHHHHHHHhCCCCeEEec-------c-----CC-------hHHHHHHhcCCCEEEEeccCccccc-cc-----CCHHHHH
Q 047337 45 DNVVQMLRENRFNKLKLF-------E-----AD-------KKILDALIGSDIEVMLAIPNYMLLE-MS-----EDPGAAA 99 (490)
Q Consensus 45 ~~vv~llk~~~i~~VRlY-------~-----~d-------~~vL~A~~~tgi~V~lGV~n~~~~~-la-----~~~~aA~ 99 (490)
++-+++|++.|++.+|+= - .| .+++.++.+.||+++|.+.--+++. +. .+++..+
T Consensus 57 ~eDi~l~~~~G~~~~R~si~Wsri~p~g~~~~n~~~~~~y~~~i~~l~~~gi~pivtL~Hfd~P~~l~~~gGw~~~~~~~ 136 (427)
T TIGR03356 57 EEDVALMKELGVDAYRFSIAWPRIFPEGTGPVNPKGLDFYDRLVDELLEAGIEPFVTLYHWDLPQALEDRGGWLNRDTAE 136 (427)
T ss_pred HHHHHHHHHcCCCeEEcccchhhcccCCCCCcCHHHHHHHHHHHHHHHHcCCeeEEeeccCCccHHHHhcCCCCChHHHH
Confidence 456889999999999862 1 12 3688999999999999996544442 11 1222222
Q ss_pred HH---HHhhccccccCCcceEEEEEeccccc
Q 047337 100 SW---VYANVSSYFYTGGVNIKYVAVGNEPF 127 (490)
Q Consensus 100 ~W---v~~~V~~~~p~~~~~I~~I~VGNEvl 127 (490)
.+ .+. +...+. +.|+....=||+.
T Consensus 137 ~f~~ya~~-~~~~~~---d~v~~w~t~NEp~ 163 (427)
T TIGR03356 137 WFAEYAAV-VAERLG---DRVKHWITLNEPW 163 (427)
T ss_pred HHHHHHHH-HHHHhC---CcCCEEEEecCcc
Confidence 22 222 222322 5677777778875
No 14
>PLN02814 beta-glucosidase
Probab=93.74 E-value=3.2 Score=45.73 Aligned_cols=72 Identities=18% Similarity=0.398 Sum_probs=45.4
Q ss_pred CCCceEEEcccccCCCCCCC----CCHHHHHHHHHHHHHHHHhCCCCCCCCCCccEEEeecccc-ccccCCCCCccceeE
Q 047337 263 YPDMHIIVGEVGWPTDGDKN----ANIENAKKFSQGLLKHVLSGAGTPARKGTIDVYLFSLLDE-NAKSIAPGNFERHWG 337 (490)
Q Consensus 263 ~~~~~vvVtETGWPS~G~~~----aS~~Na~~y~~~lv~~~~s~~Gtp~rp~~~~~y~F~~FDE-~wK~~~~g~~E~~wG 337 (490)
+++.||+|||-|++...+.. -=++--+.+++.+.+.+. .|.|.| -+|.-++.|- .|.. +.++.||
T Consensus 385 Y~~ppI~ITENG~~~~~~g~i~D~~Ri~Yl~~hl~~l~~Ai~--dGv~V~----GY~~WSllDnfEW~~----Gy~~RfG 454 (504)
T PLN02814 385 YNNPPIYILENGMPMKHDSTLQDTPRVEFIQAYIGAVLNAIK--NGSDTR----GYFVWSMIDLYELLG----GYTTSFG 454 (504)
T ss_pred cCCCCEEEECCCCCCCCCCcccCHHHHHHHHHHHHHHHHHHH--cCCCEE----EEeeccchhhhchhc----cccCccc
Confidence 55568999999997543211 223334455555545543 466653 5777788872 3542 4799999
Q ss_pred eeecCCc
Q 047337 338 IFEYDGK 344 (490)
Q Consensus 338 lf~~d~~ 344 (490)
|++-|.+
T Consensus 455 LvyVD~~ 461 (504)
T PLN02814 455 MYYVNFS 461 (504)
T ss_pred eEEECCC
Confidence 9998765
No 15
>PF00232 Glyco_hydro_1: Glycosyl hydrolase family 1; InterPro: IPR001360 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 1 GH1 from CAZY comprises enzymes with a number of known activities; beta-glucosidase (3.2.1.21 from EC); beta-galactosidase (3.2.1.23 from EC); 6-phospho-beta-galactosidase (3.2.1.85 from EC); 6-phospho-beta-glucosidase (3.2.1.86 from EC); lactase-phlorizin hydrolase (3.2.1.62 from EC), (3.2.1.108 from EC); beta-mannosidase (3.2.1.25 from EC); myrosinase (3.2.1.147 from EC). ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1QVB_A 3AHY_D 2E9L_A 2ZOX_A 2JFE_X 2E9M_A 3FIZ_A 3FIY_A 3CMJ_A 3FJ0_A ....
Probab=83.01 E-value=0.41 Score=51.90 Aligned_cols=275 Identities=17% Similarity=0.234 Sum_probs=127.9
Q ss_pred HHHHHHHHhCCCCeEEec--------c-----CC-------hHHHHHHhcCCCEEEEeccCccccc-cc-----CCHHHH
Q 047337 45 DNVVQMLRENRFNKLKLF--------E-----AD-------KKILDALIGSDIEVMLAIPNYMLLE-MS-----EDPGAA 98 (490)
Q Consensus 45 ~~vv~llk~~~i~~VRlY--------~-----~d-------~~vL~A~~~tgi~V~lGV~n~~~~~-la-----~~~~aA 98 (490)
++-+++|++.|++..|+= + .| .+++..+.+.||+.+|.+.--+++. +. .+++.+
T Consensus 61 ~eDi~l~~~lg~~~yRfsi~W~Ri~P~g~~g~~n~~~~~~Y~~~i~~l~~~gi~P~vtL~H~~~P~~l~~~ggw~~~~~~ 140 (455)
T PF00232_consen 61 KEDIALMKELGVNAYRFSISWSRIFPDGFEGKVNEEGLDFYRDLIDELLENGIEPIVTLYHFDLPLWLEDYGGWLNRETV 140 (455)
T ss_dssp HHHHHHHHHHT-SEEEEE--HHHHSTTSSSSSS-HHHHHHHHHHHHHHHHTT-EEEEEEESS--BHHHHHHTGGGSTHHH
T ss_pred hHHHHHHHhhccceeeeecchhheeecccccccCHhHhhhhHHHHHHHHhhccceeeeeeecccccceeecccccCHHHH
Confidence 467889999999988864 1 12 3689999999999999998765543 11 112222
Q ss_pred HHHHHhh---ccccccCCcceEEEEEecccccccC---C------Cc--h------hhhchHHHHHHHHHHHHHcCCCCC
Q 047337 99 ASWVYAN---VSSYFYTGGVNIKYVAVGNEPFLRT---Y------ND--T------YRYITLPALKNIQQALNDAGLGSK 158 (490)
Q Consensus 99 ~~Wv~~~---V~~~~p~~~~~I~~I~VGNEvl~~~---~------~~--~------~~~~lv~am~ni~~aL~~~gl~~~ 158 (490)
+|..+. |...+ ++.|+.-+.=||...-. | .+ + ....++-|-..+.+++++..- +
T Consensus 141 -~~F~~Ya~~~~~~~---gd~V~~w~T~NEp~~~~~~~y~~g~~~p~~~~~~~~~~~~h~~l~AHa~A~~~~~~~~~--~ 214 (455)
T PF00232_consen 141 -DWFARYAEFVFERF---GDRVKYWITFNEPNVFALLGYLYGGFPPGRDSLKAFYQAAHNLLLAHAKAVKAIKEKYP--D 214 (455)
T ss_dssp -HHHHHHHHHHHHHH---TTTBSEEEEEETHHHHHHHHHTSSSSTTCSSTHHHHHHHHHHHHHHHHHHHHHHHHHTC--T
T ss_pred -HHHHHHHHHHHHHh---CCCcceEEeccccceeeccccccccccccccccchhhHHHhhHHHHHHHHHHHHhhccc--c
Confidence 222221 22222 36788888889986421 1 00 0 012345555555667777663 3
Q ss_pred ceEeccccccccCCCCCCCCCC---------------------CcccccchhhhH----------HHHHHHHhhcCCcee
Q 047337 159 IKATVPFNADIYNSPESNPVPS---------------------AGGFRDEVKDLT----------IGIIQFLHLNNAPFT 207 (490)
Q Consensus 159 IkVsT~~~~~vl~~s~p~~~Ps---------------------~g~F~~~~~~~~----------~~~l~fL~~~~s~~~ 207 (490)
.||+..++.....--.+. .+. .|.|..+....+ ..-++.|..+.|+++
T Consensus 215 ~~IGi~~~~~~~~P~~~~-~~d~~~Aa~~~~~~~n~~f~dpi~~G~YP~~~~~~~~~~~~lp~ft~ed~~~ikg~~DFlG 293 (455)
T PF00232_consen 215 GKIGIALNFSPFYPLSPS-PEDDVAAAERADEFHNGWFLDPIFKGDYPEEMKEYLGERGILPEFTEEDKELIKGSIDFLG 293 (455)
T ss_dssp SEEEEEEEEEEEEESSSS-HHHHHHHHHHHHHHHTHHHHHHHHHSSSEHHHHHHHGGGTSSTTSGHHHHHHHTTTTSEEE
T ss_pred eEEeccccccccCCCCcc-chhhHHHHHHHHHHhhcccccCchhhcCChHHhhccccccccccccchhhhcccccchhhh
Confidence 566665544322100000 000 011111111000 011233456789999
Q ss_pred eecCCcccccCCC--CcCccccc---ccC---CCccccCCCccchhhHHhhhhHHHHHHHHc--CCCCceEEEcccccCC
Q 047337 208 VNIYPFLSLYGND--YFPVDFAF---FEG---TNKPIRDGSLLYTNVFDANFDTLVWSLDKA--GYPDMHIIVGEVGWPT 277 (490)
Q Consensus 208 vNiyPyf~~~~~~--~~~l~yA~---f~~---~~~~~~d~~~~Y~nlfda~vdav~~a~~k~--g~~~~~vvVtETGWPS 277 (490)
+|-|.=.--...+ ..+..+.. +.. ......+.+..+. -..++..|..+ -++++||+|||.|++.
T Consensus 294 iNYYt~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~gw~i~------P~Gl~~~L~~l~~~Y~~~pI~ITENG~~~ 367 (455)
T PF00232_consen 294 INYYTSRYVRADPNPSSPPSYDSDAPFGQPYNPGGPTTDWGWEIY------PEGLRDVLRYLKDRYGNPPIYITENGIGD 367 (455)
T ss_dssp EEESEEEEEEESSSSTSSTTHEEEESEEEECETSSEBCTTSTBBE------THHHHHHHHHHHHHHTSSEEEEEEE---E
T ss_pred hccccceeeccCccccccccccCCccccccccccccccccCcccc------cchHhhhhhhhccccCCCcEEEecccccc
Confidence 9987522222222 11111110 100 0000111111110 11222222221 2567999999999998
Q ss_pred CCCCC-------CCHHHHHHHHHHHHHHHHhCCCCCCCCCCccEEEeeccccc-cccCCCCCccceeEeeecC
Q 047337 278 DGDKN-------ANIENAKKFSQGLLKHVLSGAGTPARKGTIDVYLFSLLDEN-AKSIAPGNFERHWGIFEYD 342 (490)
Q Consensus 278 ~G~~~-------aS~~Na~~y~~~lv~~~~s~~Gtp~rp~~~~~y~F~~FDE~-wK~~~~g~~E~~wGlf~~d 342 (490)
..... --++--+.+++.+.+.+. .|.+. .-+|..++.|-- |.. +..+.|||++-|
T Consensus 368 ~~~~~~~~v~D~~Ri~yl~~hl~~v~~Ai~--dGv~V----~GY~~WSl~Dn~Ew~~----Gy~~rfGl~~VD 430 (455)
T PF00232_consen 368 PDEVDDGKVDDDYRIDYLQDHLNQVLKAIE--DGVNV----RGYFAWSLLDNFEWAE----GYKKRFGLVYVD 430 (455)
T ss_dssp ETTCTTSHBSHHHHHHHHHHHHHHHHHHHH--TT-EE----EEEEEETSB---BGGG----GGGSE--SEEEE
T ss_pred cccccccCcCcHHHHHHHHHHHHHHHhhhc--cCCCe----eeEeeecccccccccc----CccCccCceEEc
Confidence 76431 222334555555555553 45543 457788888843 442 478999999988
No 16
>PF02449 Glyco_hydro_42: Beta-galactosidase; InterPro: IPR013529 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This group of beta-galactosidase enzymes (3.2.1.23 from EC) belong to the glycosyl hydrolase 42 family GH42 from CAZY. The enzyme catalyses the hydrolysis of terminal, non-reducing terminal beta-D-galactosidase residues.; GO: 0004565 beta-galactosidase activity, 0005975 carbohydrate metabolic process, 0009341 beta-galactosidase complex; PDB: 1KWK_A 1KWG_A 3U7V_A.
Probab=78.85 E-value=5.6 Score=41.80 Aligned_cols=82 Identities=21% Similarity=0.289 Sum_probs=50.6
Q ss_pred HHHHHHHHhCCCCeEEeccC-------C---------hHHHHHHhcCCCEEEEeccCcccc--------cc---------
Q 047337 45 DNVVQMLRENRFNKLKLFEA-------D---------KKILDALIGSDIEVMLAIPNYMLL--------EM--------- 91 (490)
Q Consensus 45 ~~vv~llk~~~i~~VRlY~~-------d---------~~vL~A~~~tgi~V~lGV~n~~~~--------~l--------- 91 (490)
++.++++|..|++.|||-.. . ..+|..+++.||+|+|+++....+ .+
T Consensus 13 ~~d~~~m~~~G~n~vri~~~~W~~lEP~eG~ydF~~lD~~l~~a~~~Gi~viL~~~~~~~P~Wl~~~~Pe~~~~~~~g~~ 92 (374)
T PF02449_consen 13 EEDLRLMKEAGFNTVRIGEFSWSWLEPEEGQYDFSWLDRVLDLAAKHGIKVILGTPTAAPPAWLYDKYPEILPVDADGRR 92 (374)
T ss_dssp HHHHHHHHHHT-SEEEE-CCEHHHH-SBTTB---HHHHHHHHHHHCTT-EEEEEECTTTS-HHHHCCSGCCC-B-TTTSB
T ss_pred HHHHHHHHHcCCCEEEEEEechhhccCCCCeeecHHHHHHHHHHHhccCeEEEEecccccccchhhhcccccccCCCCCc
Confidence 45677888899999998432 1 368888999999999999753211 10
Q ss_pred ---cC-------C---HHHHHHHHHhhccccccCCcceEEEEEecccccc
Q 047337 92 ---SE-------D---PGAAASWVYANVSSYFYTGGVNIKYVAVGNEPFL 128 (490)
Q Consensus 92 ---a~-------~---~~aA~~Wv~~~V~~~~p~~~~~I~~I~VGNEvl~ 128 (490)
.. + .+.+.+.++..+..|.. .-.|.++-|.||.-.
T Consensus 93 ~~~g~~~~~~~~~p~yr~~~~~~~~~l~~~y~~--~p~vi~~~i~NE~~~ 140 (374)
T PF02449_consen 93 RGFGSRQHYCPNSPAYREYARRFIRALAERYGD--HPAVIGWQIDNEPGY 140 (374)
T ss_dssp EECCCSTT-HCCHHHHHHHHHHHHHHHHHHHTT--TTTEEEEEECCSTTC
T ss_pred CccCCccccchhHHHHHHHHHHHHHHHHhhccc--cceEEEEEeccccCc
Confidence 00 0 12344445544444532 256899999999764
No 17
>PRK09936 hypothetical protein; Provisional
Probab=73.12 E-value=20 Score=36.69 Aligned_cols=59 Identities=17% Similarity=0.246 Sum_probs=41.9
Q ss_pred eeeEEecCCCCC-CCCHHHHH---HHHHhCCCCeEEe-c----cCC--------hHHHHHHhcCCCEEEEeccCcc
Q 047337 29 GVGVNWGTMSTH-HLPADNVV---QMLRENRFNKLKL-F----EAD--------KKILDALIGSDIEVMLAIPNYM 87 (490)
Q Consensus 29 ~~GvnYg~~~~n-~ps~~~vv---~llk~~~i~~VRl-Y----~~d--------~~vL~A~~~tgi~V~lGV~n~~ 87 (490)
-.|+=|-|...| --++++-- +.++..|++.+=+ | +.| ...|+++.+.||+|.||++-|.
T Consensus 21 ~~g~F~Qp~n~d~~~~~~qWq~~~~~~~~~G~~tLivQWt~yG~~~fg~~~g~La~~l~~A~~~Gl~v~vGL~~Dp 96 (296)
T PRK09936 21 MKGIFYQPQNRDSQVTDTQWQGLWSQLRLQGFDTLVVQWTRYGDADFGGQRGWLAKRLAAAQQAGLKLVVGLYADP 96 (296)
T ss_pred cccceeccccccCCCCHHHHHHHHHHHHHcCCcEEEEEeeeccCCCcccchHHHHHHHHHHHHcCCEEEEcccCCh
Confidence 446669998766 45666654 4556678866544 2 223 4688999999999999999874
No 18
>cd02875 GH18_chitobiase Chitobiase (also known as di-N-acetylchitobiase) is a lysosomal glycosidase that hydrolyzes the reducing-end N-acetylglucosamine from the chitobiose core of oligosaccharides during the ordered degradation of asparagine-linked glycoproteins in eukaryotes. Chitobiase can only do so if the asparagine that joins the oligosaccharide to protein is previously removed by a glycosylasparaginase. Chitobiase is therefore the final step in the lysosomal degradation of the protein/carbohydrate linkage component of asparagine-linked glycoproteins. The catalytic domain of chitobiase is an eight-stranded alpha/beta barrel fold similar to that of other family 18 glycosyl hydrolases such as hevamine and chitotriosidase.
Probab=69.27 E-value=38 Score=35.55 Aligned_cols=102 Identities=13% Similarity=0.195 Sum_probs=59.5
Q ss_pred CCCeEEecc-CChHHHHHHhcCCCEEEEeccCcccccccCCHHHHHHHHHhhccccccCCcceEEEEEecccccccCCCc
Q 047337 55 RFNKLKLFE-ADKKILDALIGSDIEVMLAIPNYMLLEMSEDPGAAASWVYANVSSYFYTGGVNIKYVAVGNEPFLRTYND 133 (490)
Q Consensus 55 ~i~~VRlY~-~d~~vL~A~~~tgi~V~lGV~n~~~~~la~~~~aA~~Wv~~~V~~~~p~~~~~I~~I~VGNEvl~~~~~~ 133 (490)
.+++|-+|+ .|++++..+.+.|++|++..-.. .+.+ ++++.-.+++++ +..+..+ -...+|-+==|-.... ..
T Consensus 55 ~~tti~~~~~~~~~~~~~A~~~~v~v~~~~~~~-~~~l-~~~~~R~~fi~s-iv~~~~~--~gfDGIdIDwE~p~~~-~~ 128 (358)
T cd02875 55 KVTTIAIFGDIDDELLCYAHSKGVRLVLKGDVP-LEQI-SNPTYRTQWIQQ-KVELAKS--QFMDGINIDIEQPITK-GS 128 (358)
T ss_pred cceEEEecCCCCHHHHHHHHHcCCEEEEECccC-HHHc-CCHHHHHHHHHH-HHHHHHH--hCCCeEEEcccCCCCC-Cc
Confidence 478888886 47899999999999999864321 2223 345444455544 3333322 2344555544433210 11
Q ss_pred hhhhchHHHHHHHHHHHHHcCCCCCceEe
Q 047337 134 TYRYITLPALKNIQQALNDAGLGSKIKAT 162 (490)
Q Consensus 134 ~~~~~lv~am~ni~~aL~~~gl~~~IkVs 162 (490)
.-...+..-|+++|++|++.+..-.+.|.
T Consensus 129 ~d~~~~t~llkelr~~l~~~~~~~~Lsva 157 (358)
T cd02875 129 PEYYALTELVKETTKAFKKENPGYQISFD 157 (358)
T ss_pred chHHHHHHHHHHHHHHHhhcCCCcEEEEE
Confidence 11345788899999999987643234333
No 19
>PF03662 Glyco_hydro_79n: Glycosyl hydrolase family 79, N-terminal domain ; InterPro: IPR005199 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is a family of endo-beta-N-glucuronidase, or heparanase belonging to glycoside hydrolase family 79 (GH79 from CAZY). Heparan sulphate proteoglycans (HSPGs) play a key role in the self- assembly, insolubility and barrier properties of basement membranes and extracellular matrices. Hence, cleavage of heparan sulphate (HS) affects the integrity and functional state of tissues and thereby fundamental normal and pathological phenomena involving cell migration and response to changes in the extracellular microenvironment. Heparanase degrades HS at specific intrachain sites. The enzyme is synthesized as a latent approximately 65 kDa protein that is processed at the N terminus into a highly active approximately 50 kDa form. Experimental evidence suggests that heparanase may facilitate both tumor cell invasion and neovascularization, both critical steps in cancer progression. The enzyme is also involved in cell migration associated with inflammation and autoimmunity [].; GO: 0016798 hydrolase activity, acting on glycosyl bonds, 0016020 membrane; PDB: 3VNY_A 3VO0_A 3VNZ_A.
Probab=67.64 E-value=8.5 Score=40.00 Aligned_cols=87 Identities=15% Similarity=0.174 Sum_probs=35.9
Q ss_pred HHHHHHhcCCCEEEEeccCcccccccCCHHHHHHHHHhh---ccccccCCcceEEEEEecccccccCCCchh-hhchHHH
Q 047337 67 KILDALIGSDIEVMLAIPNYMLLEMSEDPGAAASWVYAN---VSSYFYTGGVNIKYVAVGNEPFLRTYNDTY-RYITLPA 142 (490)
Q Consensus 67 ~vL~A~~~tgi~V~lGV~n~~~~~la~~~~aA~~Wv~~~---V~~~~p~~~~~I~~I~VGNEvl~~~~~~~~-~~~lv~a 142 (490)
++.+=++++|.+|+.|+-.-.-.........--.|=-+| +..|--..+-+|.+-=.|||.-..+-.... +.++...
T Consensus 113 ~l~~F~~~tG~~liFgLNAL~g~~~~~~~~~~g~WnssNA~~Ll~Yt~skgy~I~~WELGNEl~g~g~~~~v~a~qyakD 192 (319)
T PF03662_consen 113 ELNNFAQKTGLKLIFGLNALLGRRQLADRDWDGSWNSSNAQSLLKYTASKGYNIDSWELGNELNGSGVGASVSAEQYAKD 192 (319)
T ss_dssp HHHHHHHHHT-EEEEEE-TTTS-HHHHHHHHHHHHHHH-TTTEEEEEESS-GGG--------HHHHSSSTT--HHHHHHH
T ss_pred HHHHHHHHhCCEEEEEecccCCCCCCCCCCcCCCCChHHHHHHHHHHHHcCCCccccccccccCCCCCCCccCHHHHHHH
Confidence 344555689999999986311100000112335675555 444433333467788899996532211111 4667777
Q ss_pred HHHHHHHHHHc
Q 047337 143 LKNIQQALNDA 153 (490)
Q Consensus 143 m~ni~~aL~~~ 153 (490)
...+|+.|++.
T Consensus 193 ~~~Lr~il~~i 203 (319)
T PF03662_consen 193 FIQLRKILNEI 203 (319)
T ss_dssp H---HHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 77777777663
No 20
>COG4782 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=67.61 E-value=15 Score=38.73 Aligned_cols=57 Identities=14% Similarity=0.355 Sum_probs=41.6
Q ss_pred chhhHHhhhhHHHHHHHHcCCCCceEEEcccccCCCCCCC------CCHHHHHHHHHHHHHHHHhC
Q 047337 243 YTNVFDANFDTLVWSLDKAGYPDMHIIVGEVGWPTDGDKN------ANIENAKKFSQGLLKHVLSG 302 (490)
Q Consensus 243 Y~nlfda~vdav~~a~~k~g~~~~~vvVtETGWPS~G~~~------aS~~Na~~y~~~lv~~~~s~ 302 (490)
|.|-|++-+-.........|.+.++|+.| |||.|.-- .|..-++..++++++.+...
T Consensus 125 fNntf~dav~R~aqI~~d~g~~~~pVvFS---WPS~g~l~~Yn~DreS~~~Sr~aLe~~lr~La~~ 187 (377)
T COG4782 125 FNNTFEDAVYRTAQIVHDSGNDGVPVVFS---WPSRGSLLGYNYDRESTNYSRPALERLLRYLATD 187 (377)
T ss_pred cCCchhHHHHHHHHHHhhcCCCcceEEEE---cCCCCeeeecccchhhhhhhHHHHHHHHHHHHhC
Confidence 55667655544444455678888999998 99999852 77777788888888877654
No 21
>smart00481 POLIIIAc DNA polymerase alpha chain like domain. DNA polymerase alpha chain like domain, incl. family of hypothetical proteins
Probab=64.63 E-value=21 Score=27.67 Aligned_cols=44 Identities=11% Similarity=0.253 Sum_probs=36.5
Q ss_pred CCHHHHHHHHHhCCCCeEEeccCC-----hHHHHHHhcCCCEEEEeccC
Q 047337 42 LPADNVVQMLRENRFNKLKLFEAD-----KKILDALIGSDIEVMLAIPN 85 (490)
Q Consensus 42 ps~~~vv~llk~~~i~~VRlY~~d-----~~vL~A~~~tgi~V~lGV~n 85 (490)
-+++++++.++++|++.|=+=|-+ +...+.+++.||+|+.|+..
T Consensus 15 ~~~~~~~~~a~~~g~~~v~iTDh~~~~~~~~~~~~~~~~gi~~i~G~E~ 63 (67)
T smart00481 15 LSPEELVKRAKELGLKAIAITDHGNLFGAVEFYKAAKKAGIKPIIGLEA 63 (67)
T ss_pred CCHHHHHHHHHHcCCCEEEEeeCCcccCHHHHHHHHHHcCCeEEEEEEE
Confidence 367899999999999999887766 46667777899999999864
No 22
>cd02874 GH18_CFLE_spore_hydrolase Cortical fragment-lytic enzyme (CFLE) is a peptidoglycan hydrolase involved in bacterial endospore germination. CFLE is expressed as an inactive preprotein (called SleB) in the forespore compartment of sporulating cells. SleB translocates across the forespore inner membrane and is deposited as a mature enzyme in the cortex layer of the spore. As part of a sensory mechanism capable of initiating germination, CFLE degrades a spore-specific peptidoglycan constituent called muramic-acid delta-lactam that comprises the outer cortex. CFLE has a C-terminal glycosyl hydrolase family 18 (GH18) catalytic domain as well as two N-terminal LysM peptidoglycan-binding domains. In addition to SleB, this family includes YaaH, YdhD, and YvbX from Bacillus subtilis.
Probab=63.65 E-value=58 Score=33.15 Aligned_cols=83 Identities=17% Similarity=0.198 Sum_probs=50.5
Q ss_pred hHHHHHHhcCCCEEEEeccCcc--------cccccCCHHHHHHHHHhhccccccCCcceEEEEEecccccccCCCchhhh
Q 047337 66 KKILDALIGSDIEVMLAIPNYM--------LLEMSEDPGAAASWVYANVSSYFYTGGVNIKYVAVGNEPFLRTYNDTYRY 137 (490)
Q Consensus 66 ~~vL~A~~~tgi~V~lGV~n~~--------~~~la~~~~aA~~Wv~~~V~~~~p~~~~~I~~I~VGNEvl~~~~~~~~~~ 137 (490)
++++.++++.++||++.|.+.. ...+.++++.-..+ .++|..+..+ -.+.+|-+-=|.+. .+-..
T Consensus 48 ~~~~~~a~~~~~kv~~~i~~~~~~~~~~~~~~~~l~~~~~r~~f-i~~iv~~l~~--~~~DGidiDwE~~~----~~d~~ 120 (313)
T cd02874 48 ERLIEAAKRRGVKPLLVITNLTNGNFDSELAHAVLSNPEARQRL-INNILALAKK--YGYDGVNIDFENVP----PEDRE 120 (313)
T ss_pred HHHHHHHHHCCCeEEEEEecCCCCCCCHHHHHHHhcCHHHHHHH-HHHHHHHHHH--hCCCcEEEecccCC----HHHHH
Confidence 6788888888999999887642 12344444432333 3334444332 23445655556552 12234
Q ss_pred chHHHHHHHHHHHHHcCC
Q 047337 138 ITLPALKNIQQALNDAGL 155 (490)
Q Consensus 138 ~lv~am~ni~~aL~~~gl 155 (490)
..+.-|+.+|.+|++.++
T Consensus 121 ~~~~fl~~lr~~l~~~~~ 138 (313)
T cd02874 121 AYTQFLRELSDRLHPAGY 138 (313)
T ss_pred HHHHHHHHHHHHhhhcCc
Confidence 578889999999987764
No 23
>PRK13511 6-phospho-beta-galactosidase; Provisional
Probab=62.24 E-value=15 Score=40.09 Aligned_cols=46 Identities=11% Similarity=0.285 Sum_probs=35.5
Q ss_pred HHHHHHHHhCCCCeEEe-------cc-----CC-------hHHHHHHhcCCCEEEEeccCccccc
Q 047337 45 DNVVQMLRENRFNKLKL-------FE-----AD-------KKILDALIGSDIEVMLAIPNYMLLE 90 (490)
Q Consensus 45 ~~vv~llk~~~i~~VRl-------Y~-----~d-------~~vL~A~~~tgi~V~lGV~n~~~~~ 90 (490)
+|-++|+++.|++.-|+ += .| .+++.++.+.||+-+|.+.--+++.
T Consensus 57 ~eDi~L~~~lG~~~yRfSIsWsRI~P~G~g~vN~~gl~~Y~~lid~l~~~GI~P~VTL~H~dlP~ 121 (469)
T PRK13511 57 PEDLKLAEEFGVNGIRISIAWSRIFPDGYGEVNPKGVEYYHRLFAECHKRHVEPFVTLHHFDTPE 121 (469)
T ss_pred HHHHHHHHHhCCCEEEeeccHhhcCcCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEEecCCCCcH
Confidence 56789999988877765 31 13 3689999999999999998766653
No 24
>PF00925 GTP_cyclohydro2: GTP cyclohydrolase II; InterPro: IPR000926 GTP cyclohydrolase II catalyses the first committed step in the biosynthesis of riboflavin. The enzyme converts GTP and water to formate, 2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino)- pyrimidine and pyrophosphate, and requires magnesium as a cofactor. It is sometimes found as a bifunctional enzyme with 3,4-dihydroxy-2-butanone 4-phosphate synthase (DHBP_synthase) IPR000422 from INTERPRO. ; GO: 0003935 GTP cyclohydrolase II activity, 0009231 riboflavin biosynthetic process; PDB: 2BZ0_B 2BZ1_A.
Probab=60.93 E-value=11 Score=35.43 Aligned_cols=38 Identities=29% Similarity=0.441 Sum_probs=27.5
Q ss_pred HHHHHHhCCCCeEEeccCChHHHHHHhcCCCEEEEecc
Q 047337 47 VVQMLRENRFNKLKLFEADKKILDALIGSDIEVMLAIP 84 (490)
Q Consensus 47 vv~llk~~~i~~VRlY~~d~~vL~A~~~tgi~V~lGV~ 84 (490)
-+|.|+..|+++||+.+.+|.-+.++.+.||+|.=-||
T Consensus 131 gaqIL~dLGV~~~rLLtnnp~k~~~L~g~gleV~~~vp 168 (169)
T PF00925_consen 131 GAQILRDLGVKKMRLLTNNPRKYVALEGFGLEVVERVP 168 (169)
T ss_dssp HHHHHHHTT--SEEEE-S-HHHHHHHHHTT--EEEEE-
T ss_pred HHHHHHHcCCCEEEECCCChhHHHHHhcCCCEEEEEec
Confidence 37899999999999999999999999999999975443
No 25
>PLN02849 beta-glucosidase
Probab=58.24 E-value=20 Score=39.57 Aligned_cols=72 Identities=22% Similarity=0.403 Sum_probs=45.3
Q ss_pred CCCceEEEcccccCCCCCCC------CCHHHHHHHHHHHHHHHHhCCCCCCCCCCccEEEeecccc-ccccCCCCCccce
Q 047337 263 YPDMHIIVGEVGWPTDGDKN------ANIENAKKFSQGLLKHVLSGAGTPARKGTIDVYLFSLLDE-NAKSIAPGNFERH 335 (490)
Q Consensus 263 ~~~~~vvVtETGWPS~G~~~------aS~~Na~~y~~~lv~~~~s~~Gtp~rp~~~~~y~F~~FDE-~wK~~~~g~~E~~ 335 (490)
+++.||+|||-|++...... -=++--+.+++.+.+.+. .|.+.+ -+|.-++.|- .|.. +.++.
T Consensus 383 Y~~pPi~ITENG~~~~d~~~~~v~D~~Ri~Yl~~hL~~l~~Ai~--dGv~V~----GY~~WSl~DnfEW~~----Gy~~R 452 (503)
T PLN02849 383 YGNPPVYILENGTPMKQDLQLQQKDTPRIEYLHAYIGAVLKAVR--NGSDTR----GYFVWSFMDLYELLK----GYEFS 452 (503)
T ss_pred cCCCCEEEeCCCCCccCCCCCcccCHHHHHHHHHHHHHHHHHHH--cCCCEE----EEeeccchhhhchhc----cccCc
Confidence 45558999999998653211 223344455555555543 466543 5777788873 2542 47999
Q ss_pred eEeeecCCc
Q 047337 336 WGIFEYDGK 344 (490)
Q Consensus 336 wGlf~~d~~ 344 (490)
|||++-|..
T Consensus 453 fGLi~VD~~ 461 (503)
T PLN02849 453 FGLYSVNFS 461 (503)
T ss_pred cceEEECCC
Confidence 999998764
No 26
>PLN02998 beta-glucosidase
Probab=56.01 E-value=21 Score=39.39 Aligned_cols=72 Identities=19% Similarity=0.356 Sum_probs=45.8
Q ss_pred CCCceEEEcccccCCCCCCC----CCHHHHHHHHHHHHHHHHhCCCCCCCCCCccEEEeecccc-ccccCCCCCccceeE
Q 047337 263 YPDMHIIVGEVGWPTDGDKN----ANIENAKKFSQGLLKHVLSGAGTPARKGTIDVYLFSLLDE-NAKSIAPGNFERHWG 337 (490)
Q Consensus 263 ~~~~~vvVtETGWPS~G~~~----aS~~Na~~y~~~lv~~~~s~~Gtp~rp~~~~~y~F~~FDE-~wK~~~~g~~E~~wG 337 (490)
+++.||+|||-|+....+.. -=++--+.+++.+.+.+. .|.+.+ -+|.-++.|- .|.. +.++.||
T Consensus 390 Y~~ppI~ITENG~~~~~~g~v~D~~Ri~Yl~~hl~~~~kAi~--dGv~V~----GY~~WSl~DnfEW~~----Gy~~RfG 459 (497)
T PLN02998 390 YGNPPVYILENGQMTPHSSSLVDTTRVKYLSSYIKAVLHSLR--KGSDVK----GYFQWSLMDVFELFG----GYERSFG 459 (497)
T ss_pred cCCCCEEEeCCCCccCCCCcccCHHHHHHHHHHHHHHHHHHH--cCCCEE----EEeeccchhhhchhc----cccCccc
Confidence 44558999999998753211 223344555555555553 466543 5777788872 3542 3799999
Q ss_pred eeecCCc
Q 047337 338 IFEYDGK 344 (490)
Q Consensus 338 lf~~d~~ 344 (490)
|++-|.+
T Consensus 460 Lv~VD~~ 466 (497)
T PLN02998 460 LLYVDFK 466 (497)
T ss_pred eEEECCC
Confidence 9998754
No 27
>PF01229 Glyco_hydro_39: Glycosyl hydrolases family 39; InterPro: IPR000514 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 39 GH39 from CAZY comprises enzymes with several known activities; alpha-L-iduronidase (3.2.1.76 from EC); beta-xylosidase (3.2.1.37 from EC). The most highly conserved regions in these enzymes are located in their N-terminal sections. These contain a glutamic acid residue which, on the basis of similarities with other families of glycosyl hydrolases [], probably acts as the proton donor in their catalytic mechanism.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 2BS9_D 2BFG_E 1W91_B 1UHV_D 1PX8_A.
Probab=55.03 E-value=3.2e+02 Score=29.90 Aligned_cols=247 Identities=17% Similarity=0.221 Sum_probs=110.7
Q ss_pred HHHhCCCCeEEeccC---C--------------------hHHHHHHhcCCCEEEEeccC--cccc-----cc--------
Q 047337 50 MLRENRFNKLKLFEA---D--------------------KKILDALIGSDIEVMLAIPN--YMLL-----EM-------- 91 (490)
Q Consensus 50 llk~~~i~~VRlY~~---d--------------------~~vL~A~~~tgi~V~lGV~n--~~~~-----~l-------- 91 (490)
+.+..||+.||+.+. | -.++..+.+.||+-+|-+.- ..+. .+
T Consensus 48 ~~~~~gf~yvR~h~l~~ddm~~~~~~~~~~~~~Ynf~~lD~i~D~l~~~g~~P~vel~f~p~~~~~~~~~~~~~~~~~~p 127 (486)
T PF01229_consen 48 LQEELGFRYVRFHGLFSDDMMVYSESDEDGIPPYNFTYLDQILDFLLENGLKPFVELGFMPMALASGYQTVFWYKGNISP 127 (486)
T ss_dssp HHCCS--SEEEES-TTSTTTT-EEEEETTEEEEE--HHHHHHHHHHHHCT-EEEEEE-SB-GGGBSS--EETTTTEE-S-
T ss_pred HHhccCceEEEEEeeccCchhhccccccCCCCcCChHHHHHHHHHHHHcCCEEEEEEEechhhhcCCCCccccccCCcCC
Confidence 334578999998742 1 25888899999997665542 1111 00
Q ss_pred cCCHHHHHHHH----HhhccccccCCcceEE--EEEecccccccCC-CchhhhchHHHHHHHHHHHHHcCCCCCceEecc
Q 047337 92 SEDPGAAASWV----YANVSSYFYTGGVNIK--YVAVGNEPFLRTY-NDTYRYITLPALKNIQQALNDAGLGSKIKATVP 164 (490)
Q Consensus 92 a~~~~aA~~Wv----~~~V~~~~p~~~~~I~--~I~VGNEvl~~~~-~~~~~~~lv~am~ni~~aL~~~gl~~~IkVsT~ 164 (490)
..+.+.-.++| +.-+.+|.- ..|+ ..=|=||+=...+ ......+-....+...++||+.. ..+||+-|
T Consensus 128 p~~~~~W~~lv~~~~~h~~~RYG~---~ev~~W~fEiWNEPd~~~f~~~~~~~ey~~ly~~~~~~iK~~~--p~~~vGGp 202 (486)
T PF01229_consen 128 PKDYEKWRDLVRAFARHYIDRYGI---EEVSTWYFEIWNEPDLKDFWWDGTPEEYFELYDATARAIKAVD--PELKVGGP 202 (486)
T ss_dssp BS-HHHHHHHHHHHHHHHHHHHHH---HHHTTSEEEESS-TTSTTTSGGG-HHHHHHHHHHHHHHHHHH---TTSEEEEE
T ss_pred cccHHHHHHHHHHHHHHHHhhcCC---ccccceeEEeCcCCCcccccCCCCHHHHHHHHHHHHHHHHHhC--CCCcccCc
Confidence 01222222223 322333311 1222 4557899643321 11112345566677778888876 45888876
Q ss_pred ccccccCCCCCCCCCCCcccccchhhhHHHHHHHHhhcC---CceeeecCCcccccCCCCcCcccccccCCCccccCCCc
Q 047337 165 FNADIYNSPESNPVPSAGGFRDEVKDLTIGIIQFLHLNN---APFTVNIYPFLSLYGNDYFPVDFAFFEGTNKPIRDGSL 241 (490)
Q Consensus 165 ~~~~vl~~s~p~~~Ps~g~F~~~~~~~~~~~l~fL~~~~---s~~~vNiyPyf~~~~~~~~~l~yA~f~~~~~~~~d~~~ 241 (490)
-. . . .....+...++|+.+.+ |++..+.||+=...... .... ..-.
T Consensus 203 ~~----~----------~----~~~~~~~~~l~~~~~~~~~~DfiS~H~y~~~~~~~~~------------~~~~-~~~~ 251 (486)
T PF01229_consen 203 AF----A----------W----AYDEWCEDFLEFCKGNNCPLDFISFHSYGTDSAEDIN------------ENMY-ERIE 251 (486)
T ss_dssp EE----E----------T----T-THHHHHHHHHHHHCT---SEEEEEEE-BESESE-S------------S-EE-EEB-
T ss_pred cc----c----------c----cHHHHHHHHHHHHhcCCCCCCEEEEEecccccccccc------------hhHH-hhhh
Confidence 10 0 0 01135677788887654 55677777742111000 0000 0000
Q ss_pred cchhhHHhhhhHHHHHHHHcCCCCceEEEcccccCCCCCCC----CCHHHHHHHHHHHHHHHHhCCCCCCCCCCccEE--
Q 047337 242 LYTNVFDANFDTLVWSLDKAGYPDMHIIVGEVGWPTDGDKN----ANIENAKKFSQGLLKHVLSGAGTPARKGTIDVY-- 315 (490)
Q Consensus 242 ~Y~nlfda~vdav~~a~~k~g~~~~~vvVtETGWPS~G~~~----aS~~Na~~y~~~lv~~~~s~~Gtp~rp~~~~~y-- 315 (490)
....+++ ++..++..+...+.+++++.+|| |.+.-... -|.-+|+-..+++++.... .++.|
T Consensus 252 ~~~~~~~-~~~~~~~~~~~e~~p~~~~~~tE--~n~~~~~~~~~~dt~~~aA~i~k~lL~~~~~---------~l~~~sy 319 (486)
T PF01229_consen 252 DSRRLFP-ELKETRPIINDEADPNLPLYITE--WNASISPRNPQHDTCFKAAYIAKNLLSNDGA---------FLDSFSY 319 (486)
T ss_dssp -HHHHHH-HHHHHHHHHHTSSSTT--EEEEE--EES-SSTT-GGGGSHHHHHHHHH-HHHHGGG---------T-SEEEE
T ss_pred hHHHHHH-HHHHHHHHHhhccCCCCceeecc--cccccCCCcchhccccchhhHHHHHHHhhhh---------hhhhhhc
Confidence 0112222 22233344555678999999999 88765442 5555666555556655421 12322
Q ss_pred -Eee-ccccccccCCCCCccceeEeeecCCcee
Q 047337 316 -LFS-LLDENAKSIAPGNFERHWGIFEYDGKPK 346 (490)
Q Consensus 316 -~F~-~FDE~wK~~~~g~~E~~wGlf~~d~~~k 346 (490)
.|+ .|.|+--+ ...+-.-|||++.+|-+|
T Consensus 320 wt~sD~Fee~~~~--~~pf~ggfGLlt~~gI~K 350 (486)
T PF01229_consen 320 WTFSDRFEENGTP--RKPFHGGFGLLTKLGIPK 350 (486)
T ss_dssp S-SBS---TTSS---SSSSSS-S-SEECCCEE-
T ss_pred cchhhhhhccCCC--CCceecchhhhhccCCCc
Confidence 222 23333221 123555699999998665
No 28
>TIGR00505 ribA GTP cyclohydrolase II. Several members of the family are bifunctional, involving both ribA and ribB function. In these cases, ribA tends to be on the C-terminal end of the protein and ribB tends to be on the N-terminal. The function of archaeal members of the family has not been demonstrated and is assigned tentatively.
Probab=54.49 E-value=19 Score=34.50 Aligned_cols=33 Identities=18% Similarity=0.403 Sum_probs=30.5
Q ss_pred HHHHHhCCCCeEEeccCChHHHHHHhcCCCEEE
Q 047337 48 VQMLRENRFNKLKLFEADKKILDALIGSDIEVM 80 (490)
Q Consensus 48 v~llk~~~i~~VRlY~~d~~vL~A~~~tgi~V~ 80 (490)
+|.|+..|+++||+.+.++.=+.++.+.||+|.
T Consensus 131 AQIL~dLGV~~~rLLtn~~~k~~~L~g~gleVv 163 (191)
T TIGR00505 131 ADILEDLGVKKVRLLTNNPKKIEILKKAGINIV 163 (191)
T ss_pred HHHHHHcCCCEEEECCCCHHHHHHHHhCCCEEE
Confidence 789999999999999999888889999999987
No 29
>PRK00393 ribA GTP cyclohydrolase II; Reviewed
Probab=54.21 E-value=19 Score=34.67 Aligned_cols=33 Identities=24% Similarity=0.458 Sum_probs=30.7
Q ss_pred HHHHHhCCCCeEEeccCChHHHHHHhcCCCEEE
Q 047337 48 VQMLRENRFNKLKLFEADKKILDALIGSDIEVM 80 (490)
Q Consensus 48 v~llk~~~i~~VRlY~~d~~vL~A~~~tgi~V~ 80 (490)
+|.|+..|+++||+.+.++.-+.++.+.||+|.
T Consensus 134 AQIL~dLGV~~mrLLtn~~~k~~~L~g~GleV~ 166 (197)
T PRK00393 134 ADMLKALGVKKVRLLTNNPKKVEALTEAGINIV 166 (197)
T ss_pred HHHHHHcCCCEEEECCCCHHHHHHHHhCCCEEE
Confidence 789999999999999999878889999999997
No 30
>PF05990 DUF900: Alpha/beta hydrolase of unknown function (DUF900); InterPro: IPR010297 This domain is associated with proteins of unknown function, which are hydrolase-like.
Probab=51.05 E-value=40 Score=33.19 Aligned_cols=41 Identities=20% Similarity=0.452 Sum_probs=27.5
Q ss_pred HHHcCCCCceEEEcccccCCCCCCC------CCHHHHHHHHHHHHHHHHh
Q 047337 258 LDKAGYPDMHIIVGEVGWPTDGDKN------ANIENAKKFSQGLLKHVLS 301 (490)
Q Consensus 258 ~~k~g~~~~~vvVtETGWPS~G~~~------aS~~Na~~y~~~lv~~~~s 301 (490)
...+++++++|+.+ |||.|... .+....+..+..+++.+..
T Consensus 42 ~~~~~~~~~~i~Fs---WPS~g~~~~Y~~d~~~a~~s~~~l~~~L~~L~~ 88 (233)
T PF05990_consen 42 AHDLGFPGVVILFS---WPSDGSLLGYFYDRESARFSGPALARFLRDLAR 88 (233)
T ss_pred HHHhCCCceEEEEE---cCCCCChhhhhhhhhhHHHHHHHHHHHHHHHHh
Confidence 44567888777665 99999852 4555556666677766654
No 31
>PRK09525 lacZ beta-D-galactosidase; Reviewed
Probab=50.89 E-value=80 Score=38.11 Aligned_cols=97 Identities=16% Similarity=0.123 Sum_probs=59.5
Q ss_pred eeeEEecCCCC---CCCCHHHH---HHHHHhCCCCeEEecc--CChHHHHHHhcCCCEEEEeccCccc-----ccccCCH
Q 047337 29 GVGVNWGTMST---HHLPADNV---VQMLRENRFNKLKLFE--ADKKILDALIGSDIEVMLAIPNYML-----LEMSEDP 95 (490)
Q Consensus 29 ~~GvnYg~~~~---n~ps~~~v---v~llk~~~i~~VRlY~--~d~~vL~A~~~tgi~V~lGV~n~~~-----~~la~~~ 95 (490)
..|+|+-.... .-.+++++ ++++|+.|++.||+-. .++..++++-+.||-|+--++.+.. ..+..++
T Consensus 352 lrGvn~h~~~p~~G~a~t~e~~~~di~lmK~~g~NaVR~sHyP~~p~fydlcDe~GilV~dE~~~e~hg~~~~~~~~~dp 431 (1027)
T PRK09525 352 IRGVNRHEHHPEHGQVMDEETMVQDILLMKQHNFNAVRCSHYPNHPLWYELCDRYGLYVVDEANIETHGMVPMNRLSDDP 431 (1027)
T ss_pred EEEeEccccCcccCccCCHHHHHHHHHHHHHCCCCEEEecCCCCCHHHHHHHHHcCCEEEEecCccccCCccccCCCCCH
Confidence 45888754322 23455554 5678899999999943 3578999999999999877654211 1122222
Q ss_pred H---HHHHHHHhhccccccCCcceEEEEEeccccc
Q 047337 96 G---AAASWVYANVSSYFYTGGVNIKYVAVGNEPF 127 (490)
Q Consensus 96 ~---aA~~Wv~~~V~~~~p~~~~~I~~I~VGNEvl 127 (490)
. +..+-+++.|.+.... -.|..=++|||.-
T Consensus 432 ~~~~~~~~~~~~mV~RdrNH--PSIi~WSlgNE~~ 464 (1027)
T PRK09525 432 RWLPAMSERVTRMVQRDRNH--PSIIIWSLGNESG 464 (1027)
T ss_pred HHHHHHHHHHHHHHHhCCCC--CEEEEEeCccCCC
Confidence 2 2222244445544322 4577889999964
No 32
>PRK09593 arb 6-phospho-beta-glucosidase; Reviewed
Probab=46.88 E-value=45 Score=36.58 Aligned_cols=71 Identities=13% Similarity=0.205 Sum_probs=44.3
Q ss_pred ceEEEcccccCCCCCCC--------CCHHHHHHHHHHHHHHHHhCCCCCCCCCCccEEEeecccc-ccccCCCCCcccee
Q 047337 266 MHIIVGEVGWPTDGDKN--------ANIENAKKFSQGLLKHVLSGAGTPARKGTIDVYLFSLLDE-NAKSIAPGNFERHW 336 (490)
Q Consensus 266 ~~vvVtETGWPS~G~~~--------aS~~Na~~y~~~lv~~~~s~~Gtp~rp~~~~~y~F~~FDE-~wK~~~~g~~E~~w 336 (490)
+||+|||-|........ -=++--+.+++.+.+.+. ..|.+.| -+|.-++.|- .|.. |+.++.|
T Consensus 369 ~Pi~ItENG~~~~d~~~~~g~i~D~~Ri~yl~~hl~~~~~Ai~-~dGv~v~----GY~~WSl~Dn~EW~~---G~y~~Rf 440 (478)
T PRK09593 369 KPMFIVENGLGAVDKPDENGYVEDDYRIDYLAAHIKAMRDAIN-EDGVELL----GYTTWGCIDLVSAGT---GEMKKRY 440 (478)
T ss_pred CCEEEEcCCCCCCCCCCCCCccCCHHHHHHHHHHHHHHHHHHH-HcCCCEE----EEeeccchHhhcccC---CCccCee
Confidence 58999999998544221 123345555555555542 2466543 4777788873 2542 3478999
Q ss_pred EeeecCCc
Q 047337 337 GIFEYDGK 344 (490)
Q Consensus 337 Glf~~d~~ 344 (490)
||++-|..
T Consensus 441 Gl~~VD~~ 448 (478)
T PRK09593 441 GFIYVDRD 448 (478)
T ss_pred ceEEECCC
Confidence 99998764
No 33
>PF02055 Glyco_hydro_30: O-Glycosyl hydrolase family 30; InterPro: IPR001139 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 30 GH30 from CAZY comprises enzymes with only one known activity; glucosylceramidase (3.2.1.45 from EC). Family 30 encompasses the mammalian glucosylceramidases. Human acid beta-glucosidase (D-glucosyl-N-acylsphingosine glucohydrolase), cleaves the glucosidic bonds of glucosylceramide and synthetic beta-glucosides []. Any one of over 50 different mutations in the gene of glucocerebrosidase have been found to affect activity of this hydrolase, producing variants of Gaucher disease, the most prevalent lysosomal storage disease [, ].; GO: 0004348 glucosylceramidase activity, 0006665 sphingolipid metabolic process, 0007040 lysosome organization, 0005764 lysosome; PDB: 2VT0_B 1NOF_A 2Y24_A 2WCG_B 2J25_A 3GXM_D 1Y7V_B 2NT0_C 3GXF_C 3GXD_A ....
Probab=44.56 E-value=3.6e+02 Score=29.84 Aligned_cols=87 Identities=21% Similarity=0.266 Sum_probs=49.6
Q ss_pred cCCCEEEEeccCc--------cc---ccccC---C--HHHHHHHHHhhccccccCCcceEEEEEecccccccC-----CC
Q 047337 74 GSDIEVMLAIPNY--------ML---LEMSE---D--PGAAASWVYANVSSYFYTGGVNIKYVAVGNEPFLRT-----YN 132 (490)
Q Consensus 74 ~tgi~V~lGV~n~--------~~---~~la~---~--~~aA~~Wv~~~V~~~~p~~~~~I~~I~VGNEvl~~~-----~~ 132 (490)
+.+++|+..-|-- .. ..+.. + .++-.+.+.+-|+.|- +.+..|-+|++.||+.... +.
T Consensus 166 ~~~lki~aSpWSpP~WMKtn~~~~g~g~l~g~~~~~y~~~yA~Y~vkfi~aY~-~~GI~i~aiT~QNEP~~~~~~~~~~~ 244 (496)
T PF02055_consen 166 NPNLKIFASPWSPPAWMKTNGSMNGGGSLKGSLGDEYYQAYADYFVKFIQAYK-KEGIPIWAITPQNEPDNGSDPNYPWP 244 (496)
T ss_dssp HTT-EEEEEES---GGGBTTSSSCSS-BBSCGTTSHHHHHHHHHHHHHHHHHH-CTT--ESEEESSSSCCGGGSTT-SSC
T ss_pred CCCcEEEEecCCCCHHHccCCcCcCCCccCCCCCchhHHHHHHHHHHHHHHHH-HCCCCeEEEeccCCCCCCCCCCCCCC
Confidence 4569999998852 11 11211 1 1222444666677764 4578999999999998521 11
Q ss_pred c-hh-hhchHHHHHH-HHHHHHHcCCCCCceE
Q 047337 133 D-TY-RYITLPALKN-IQQALNDAGLGSKIKA 161 (490)
Q Consensus 133 ~-~~-~~~lv~am~n-i~~aL~~~gl~~~IkV 161 (490)
. .+ +.+....|++ +.-+|++.+++.++|+
T Consensus 245 s~~~t~~~~~~Fi~~~LgP~l~~~~~g~d~kI 276 (496)
T PF02055_consen 245 SMGWTPEEQADFIKNYLGPALRKAGLGKDVKI 276 (496)
T ss_dssp --B--HHHHHHHHHHTHHHHHHTSTT-TTSEE
T ss_pred cCCCCHHHHHHHHHHHHHHHHHhcCCCCceEE
Confidence 1 11 3455666765 8889999998666886
No 34
>PRK12485 bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II-like protein; Provisional
Probab=43.39 E-value=28 Score=36.98 Aligned_cols=33 Identities=27% Similarity=0.366 Sum_probs=29.8
Q ss_pred HHHHHHhCCCCeEEeccCChHHHHHHhcCCCEEE
Q 047337 47 VVQMLRENRFNKLKLFEADKKILDALIGSDIEVM 80 (490)
Q Consensus 47 vv~llk~~~i~~VRlY~~d~~vL~A~~~tgi~V~ 80 (490)
-+|+|+..|+++|||. .||.=+.++.+.||+|.
T Consensus 330 gAqILr~LGV~kirLL-nNP~K~~~L~~~GIeV~ 362 (369)
T PRK12485 330 GAQILQDLGVGKLRHL-GPPLKYAGLTGYDLEVV 362 (369)
T ss_pred HHHHHHHcCCCEEEEC-CCchhhhhhhhCCcEEE
Confidence 3789999999999999 78888889999999997
No 35
>cd00641 GTP_cyclohydro2 GTP cyclohydrolase II (RibA). GTP cyclohydrolase II catalyzes the conversion of GTP to 2,5-diamino-6-ribosylamino-4(3H)-pyrimidinone 5' phosphate, formate, pyrophosphate (APy), and GMP in the biosynthetic pathway of riboflavin. Riboflavin is the precursor molecule for the synthesis of the coenzymes flavin mononucleotide (FMN) and flavin adenine dinucleotide (FAD) which are essential to cell metabolism. The enzyme is present in plants and numerous pathogenic bacteria, especially gram negative organisms, who are dependent on endogenous synthesis of the vitamin because they lack an appropriate uptake system. For animals and humans, which lack this biosynthetic pathway, riboflavin is the essential vitamin B2. GTP cyclohydrolase II requires magnesium ions for activity and has a bound catalytic zinc. The functionally active form is thought to be a homodimer. A paralogous protein is encoded in the genome of Streptomyces coelicolor, which converts GTP to 2-amino-5-fo
Probab=43.26 E-value=36 Score=32.63 Aligned_cols=34 Identities=32% Similarity=0.496 Sum_probs=30.8
Q ss_pred HHHHHhCCCCeEEeccCChHHHHHHhcCCCEEEE
Q 047337 48 VQMLRENRFNKLKLFEADKKILDALIGSDIEVML 81 (490)
Q Consensus 48 v~llk~~~i~~VRlY~~d~~vL~A~~~tgi~V~l 81 (490)
+|.|+..|++++|+.+.++.=+.++.+.||+|.=
T Consensus 133 AQIL~dLGv~~mrLLs~~~~k~~~L~gfglevv~ 166 (193)
T cd00641 133 AQILRDLGIKSVRLLTNNPDKIDALEGYGIEVVE 166 (193)
T ss_pred HHHHHHcCCCeEEECCCCHHHHHHHHhCCCEEEE
Confidence 7899999999999999988778899999999983
No 36
>PRK10340 ebgA cryptic beta-D-galactosidase subunit alpha; Reviewed
Probab=42.89 E-value=2.4e+02 Score=34.11 Aligned_cols=97 Identities=16% Similarity=0.173 Sum_probs=58.4
Q ss_pred eeeEEecCCCC---CCCCHHHH---HHHHHhCCCCeEEecc--CChHHHHHHhcCCCEEEEeccCccc--------cccc
Q 047337 29 GVGVNWGTMST---HHLPADNV---VQMLRENRFNKLKLFE--ADKKILDALIGSDIEVMLAIPNYML--------LEMS 92 (490)
Q Consensus 29 ~~GvnYg~~~~---n~ps~~~v---v~llk~~~i~~VRlY~--~d~~vL~A~~~tgi~V~lGV~n~~~--------~~la 92 (490)
..|+|+-.... ...+++.+ ++++|+.|++.||+-. .++..+.++.+.||-|+--++.+.. ..+.
T Consensus 336 lrGvnrh~~~p~~G~a~~~e~~~~dl~lmK~~g~NavR~sHyP~~~~fydlcDe~GllV~dE~~~e~~g~~~~~~~~~~~ 415 (1021)
T PRK10340 336 LHGVNRHDNDHRKGRAVGMDRVEKDIQLMKQHNINSVRTAHYPNDPRFYELCDIYGLFVMAETDVESHGFANVGDISRIT 415 (1021)
T ss_pred EEEeecCCCCcccCccCCHHHHHHHHHHHHHCCCCEEEecCCCCCHHHHHHHHHCCCEEEECCcccccCccccccccccc
Confidence 45888654321 12344444 6688999999999864 2367899999999998875532110 1122
Q ss_pred CCH---HHHHHHHHhhccccccCCcceEEEEEeccccc
Q 047337 93 EDP---GAAASWVYANVSSYFYTGGVNIKYVAVGNEPF 127 (490)
Q Consensus 93 ~~~---~aA~~Wv~~~V~~~~p~~~~~I~~I~VGNEvl 127 (490)
.++ ++..+-+++.|...... -.|..=++|||.-
T Consensus 416 ~~p~~~~~~~~~~~~mV~RdrNH--PSIi~WslGNE~~ 451 (1021)
T PRK10340 416 DDPQWEKVYVDRIVRHIHAQKNH--PSIIIWSLGNESG 451 (1021)
T ss_pred CCHHHHHHHHHHHHHHHHhCCCC--CEEEEEECccCcc
Confidence 222 12223355555555322 4577888999974
No 37
>PRK14019 bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II-like protein; Provisional
Probab=41.51 E-value=31 Score=36.57 Aligned_cols=35 Identities=23% Similarity=0.397 Sum_probs=31.0
Q ss_pred HHHHHhCCCCeEEeccCChHHHHHHhcCCCEEEEec
Q 047337 48 VQMLRENRFNKLKLFEADKKILDALIGSDIEVMLAI 83 (490)
Q Consensus 48 v~llk~~~i~~VRlY~~d~~vL~A~~~tgi~V~lGV 83 (490)
+|+|+..|+++|||.+ ||.=+.++.+.||+|.==+
T Consensus 328 aqIL~~Lgv~~irLlT-np~K~~~L~~~Gi~V~~~~ 362 (367)
T PRK14019 328 AQILRDLGVGKMRLLS-SPRKFPSMSGFGLEVTGYV 362 (367)
T ss_pred HHHHHHcCCCeEEECC-CcHHHHhhhhCCcEEEEEe
Confidence 7899999999999999 8888889999999997433
No 38
>COG1671 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=40.46 E-value=81 Score=29.29 Aligned_cols=89 Identities=13% Similarity=0.186 Sum_probs=49.1
Q ss_pred Eec-cCC-----hHHHHHHhcCCCEEEEeccCcccc----------cccCCHHHHHHHHHhhccccccCCcceEEE--EE
Q 047337 60 KLF-EAD-----KKILDALIGSDIEVMLAIPNYMLL----------EMSEDPGAAASWVYANVSSYFYTGGVNIKY--VA 121 (490)
Q Consensus 60 RlY-~~d-----~~vL~A~~~tgi~V~lGV~n~~~~----------~la~~~~aA~~Wv~~~V~~~~p~~~~~I~~--I~ 121 (490)
+|| |+| ..+.+++..+|++|++= -|..+. -+.+..++|+.|+.....+. +.|.+ |-
T Consensus 3 ~I~VDADACPVk~~i~r~A~r~~~~v~~V-an~~~~~~~~~~i~~v~V~~g~DaaD~~Iv~~a~~g-----DlVVT~Di~ 76 (150)
T COG1671 3 TIWVDADACPVKDEIYRVAERMGLKVTFV-ANFPHRVPPSPEIRTVVVDAGFDAADDWIVNLAEKG-----DLVVTADIP 76 (150)
T ss_pred eEEEeCCCCchHHHHHHHHHHhCCeEEEE-eCCCccCCCCCceeEEEecCCcchHHHHHHHhCCCC-----CEEEECchH
Confidence 455 566 45677777788877652 221111 23456689999988766544 44433 22
Q ss_pred ecccccccC----------CCchhhhchHHHHHHHHHHHHHcCC
Q 047337 122 VGNEPFLRT----------YNDTYRYITLPALKNIQQALNDAGL 155 (490)
Q Consensus 122 VGNEvl~~~----------~~~~~~~~lv~am~ni~~aL~~~gl 155 (490)
.-.+.|..+ |+.+-.. ..-+|+++..-||+.|.
T Consensus 77 LA~~ll~kg~~v~~prGr~y~~~nI~-~~L~~R~~~~~lR~~G~ 119 (150)
T COG1671 77 LASLLLDKGAAVLNPRGRLYTEENIG-ERLAMRDFMAKLRRQGK 119 (150)
T ss_pred HHHHHHhcCCEEECCCCcccCHhHHH-HHHHHHHHHHHHHHhcc
Confidence 222322221 2222222 24478888899998884
No 39
>PRK09589 celA 6-phospho-beta-glucosidase; Reviewed
Probab=40.03 E-value=72 Score=35.01 Aligned_cols=45 Identities=13% Similarity=0.388 Sum_probs=34.7
Q ss_pred HHHHHHHHhCCCCeEEe-------cc------CC-------hHHHHHHhcCCCEEEEeccCcccc
Q 047337 45 DNVVQMLRENRFNKLKL-------FE------AD-------KKILDALIGSDIEVMLAIPNYMLL 89 (490)
Q Consensus 45 ~~vv~llk~~~i~~VRl-------Y~------~d-------~~vL~A~~~tgi~V~lGV~n~~~~ 89 (490)
++-++||+..|++.-|+ +- .| .+++.++.+.||+-+|.++--+++
T Consensus 70 ~eDi~Lm~~lG~~~yRfSIsWsRI~P~G~~~~~N~~gl~~Y~~lid~L~~~GI~P~VTL~H~dlP 134 (476)
T PRK09589 70 KEDIALFAEMGFKCFRTSIAWTRIFPQGDELEPNEEGLQFYDDLFDECLKQGIEPVVTLSHFEMP 134 (476)
T ss_pred HHHHHHHHHcCCCEEEeccchhhcCcCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCCC
Confidence 46688999988777664 31 23 368999999999999999876665
No 40
>PRK15014 6-phospho-beta-glucosidase BglA; Provisional
Probab=39.46 E-value=51 Score=36.20 Aligned_cols=71 Identities=13% Similarity=0.211 Sum_probs=43.4
Q ss_pred ceEEEcccccCCCCCCC--------CCHHHHHHHHHHHHHHHHhCCCCCCCCCCccEEEeecccc-ccccCCCCCcccee
Q 047337 266 MHIIVGEVGWPTDGDKN--------ANIENAKKFSQGLLKHVLSGAGTPARKGTIDVYLFSLLDE-NAKSIAPGNFERHW 336 (490)
Q Consensus 266 ~~vvVtETGWPS~G~~~--------aS~~Na~~y~~~lv~~~~s~~Gtp~rp~~~~~y~F~~FDE-~wK~~~~g~~E~~w 336 (490)
+||+|||-|........ -=++--+.+++.+.+.+. ..|.+.+ -+|.-++.|- .|.. |+.++.|
T Consensus 369 ~Pi~ItENG~~~~d~~~~~g~i~D~~Ri~Yl~~hl~~l~~Ai~-~dGv~v~----GY~~WSl~DnfEw~~---G~y~~Rf 440 (477)
T PRK15014 369 KPLFIVENGFGAYDKVEEDGSINDDYRIDYLRAHIEEMKKAVT-YDGVDLM----GYTPWGCIDCVSFTT---GQYSKRY 440 (477)
T ss_pred CCEEEeCCCCCCCCCcCcCCccCCHHHHHHHHHHHHHHHHHHH-HcCCCEE----EEeeccchhhhcccC---CCccCcc
Confidence 58999999998543211 122334445555544442 2466543 4777788873 2553 4478999
Q ss_pred EeeecCCc
Q 047337 337 GIFEYDGK 344 (490)
Q Consensus 337 Glf~~d~~ 344 (490)
||++-|.+
T Consensus 441 Gl~~VD~~ 448 (477)
T PRK15014 441 GFIYVNKH 448 (477)
T ss_pred ceEEECCC
Confidence 99988754
No 41
>cd04743 NPD_PKS 2-Nitropropane dioxygenase (NPD)-like domain, associated with polyketide synthases (PKS). NPD is part of the nitroalkaneoxidizing enzyme family, that catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDPs are members of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=38.96 E-value=2e+02 Score=30.01 Aligned_cols=80 Identities=15% Similarity=0.129 Sum_probs=51.2
Q ss_pred CCeeeEEecCCCCCCCCHHHHHHHHHhCCCCeEEeccCChHHHHHHhcCCCEEEEeccCcccccccCCHHHHHHHHHhhc
Q 047337 27 GDGVGVNWGTMSTHHLPADNVVQMLRENRFNKLKLFEADKKILDALIGSDIEVMLAIPNYMLLEMSEDPGAAASWVYANV 106 (490)
Q Consensus 27 ~~~~GvnYg~~~~n~ps~~~vv~llk~~~i~~VRlY~~d~~vL~A~~~tgi~V~lGV~n~~~~~la~~~~aA~~Wv~~~V 106 (490)
...+|||.-...++ |..++.++.+...+.+.|=+..-+|...+.+++.||+|+.-|+. +..|..+.+..
T Consensus 55 dkPfGVnl~~~~~~-~~~~~~l~vi~e~~v~~V~~~~G~P~~~~~lk~~Gi~v~~~v~s---------~~~A~~a~~~G- 123 (320)
T cd04743 55 DKPWGVGILGFVDT-ELRAAQLAVVRAIKPTFALIAGGRPDQARALEAIGISTYLHVPS---------PGLLKQFLENG- 123 (320)
T ss_pred CCCeEEEEeccCCC-cchHHHHHHHHhcCCcEEEEcCCChHHHHHHHHCCCEEEEEeCC---------HHHHHHHHHcC-
Confidence 35688887544332 33355666666677777766655666678889999999977763 34444444422
Q ss_pred cccccCCcceEEEEEecccc
Q 047337 107 SSYFYTGGVNIKYVAVGNEP 126 (490)
Q Consensus 107 ~~~~p~~~~~I~~I~VGNEv 126 (490)
.+.| |+-|.|.
T Consensus 124 -------aD~v--VaqG~EA 134 (320)
T cd04743 124 -------ARKF--IFEGREC 134 (320)
T ss_pred -------CCEE--EEecCcC
Confidence 2443 8889997
No 42
>PRK09314 bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II protein; Provisional
Probab=38.58 E-value=40 Score=35.42 Aligned_cols=34 Identities=21% Similarity=0.307 Sum_probs=30.9
Q ss_pred HHHHHHhCCCCeEEeccCC-hHHHHHHhcCCCEEE
Q 047337 47 VVQMLRENRFNKLKLFEAD-KKILDALIGSDIEVM 80 (490)
Q Consensus 47 vv~llk~~~i~~VRlY~~d-~~vL~A~~~tgi~V~ 80 (490)
..|+|+..|+++||+.+.+ |.=+.++.+.||+|.
T Consensus 300 gaqIL~dLGi~~irLlTnn~p~K~~~L~~~GieV~ 334 (339)
T PRK09314 300 GAQILKYLGIKDIKLLSSSEDKEYVGLSGFGLNIV 334 (339)
T ss_pred HHHHHHHCCCCEEEECCCCChhhhhhHhhCCcEEE
Confidence 3789999999999999999 888889999999986
No 43
>cd02872 GH18_chitolectin_chitotriosidase This conserved domain family includes a large number of catalytically inactive chitinase-like lectins (chitolectins) including YKL-39, YKL-40 (HCGP39), YM1, oviductin, and AMCase (acidic mammalian chitinase), as well as catalytically active chitotriosidases. The conserved domain is an eight-stranded alpha/beta barrel fold belonging to the family 18 glycosyl hydrolases. The fold has a pronounced active-site cleft at the C-terminal end of the beta-barrel. The chitolectins lack a key active site glutamate (the proton donor required for hydrolytic activity) but retain highly conserved residues involved in oligosaccharide binding. Chitotriosidase is a chitinolytic enzyme expressed in maturing macrophages, which suggests that it plays a part in antimicrobial defense. Chitotriosidase hydrolyzes chitotriose, as well as colloidal chitin to yield chitobiose and is therefore considered an exochitinase. Chitotriosidase occurs in two major forms, the la
Probab=38.10 E-value=2.4e+02 Score=29.21 Aligned_cols=77 Identities=12% Similarity=0.181 Sum_probs=39.3
Q ss_pred CCCEEEEeccC--c---ccccccCCHHHHHHHHHhhccccccCCcceEEEEEeccccccc-CCCchhhhchHHHHHHHHH
Q 047337 75 SDIEVMLAIPN--Y---MLLEMSEDPGAAASWVYANVSSYFYTGGVNIKYVAVGNEPFLR-TYNDTYRYITLPALKNIQQ 148 (490)
Q Consensus 75 tgi~V~lGV~n--~---~~~~la~~~~aA~~Wv~~~V~~~~p~~~~~I~~I~VGNEvl~~-~~~~~~~~~lv~am~ni~~ 148 (490)
.++||++.|-- . ....+.++.+.-..++++ |..++.+ -.+.+|-+==|.... +...+-...++..|+.+|+
T Consensus 69 p~lkvlisiGG~~~~~~~f~~~~~~~~~r~~fi~~-iv~~l~~--~~~DGidiDwE~p~~~~~~~~d~~~~~~ll~~lr~ 145 (362)
T cd02872 69 PNLKTLLAIGGWNFGSAKFSAMAASPENRKTFIKS-AIAFLRK--YGFDGLDLDWEYPGQRGGPPEDKENFVTLLKELRE 145 (362)
T ss_pred CCceEEEEEcCCCCCcchhHHHhCCHHHHHHHHHH-HHHHHHH--cCCCCeeeeeeccccCCCCHHHHHHHHHHHHHHHH
Confidence 68999987742 2 123445555443444332 3333322 223444443333211 0001123557889999999
Q ss_pred HHHHcC
Q 047337 149 ALNDAG 154 (490)
Q Consensus 149 aL~~~g 154 (490)
+|++.+
T Consensus 146 ~l~~~~ 151 (362)
T cd02872 146 AFEPEA 151 (362)
T ss_pred HHHhhC
Confidence 999873
No 44
>PRK09318 bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II protein; Provisional
Probab=37.47 E-value=45 Score=35.70 Aligned_cols=38 Identities=26% Similarity=0.383 Sum_probs=33.6
Q ss_pred HHHHHhCCCCeEEeccCChHHHHHHhcCCCEEEEeccC
Q 047337 48 VQMLRENRFNKLKLFEADKKILDALIGSDIEVMLAIPN 85 (490)
Q Consensus 48 v~llk~~~i~~VRlY~~d~~vL~A~~~tgi~V~lGV~n 85 (490)
.|.|+..|+++||+.+.+|.=+.++.+.||+|.=-++.
T Consensus 320 AqIL~dLGV~~irLLTNnp~K~~~L~~~GieV~~~vpl 357 (387)
T PRK09318 320 FQILKALGIEKVRLLTNNPRKTKALEKYGIEVVETVPL 357 (387)
T ss_pred HHHHHHcCCCEEEECCCCHHHHHHHHhCCCEEEEEecc
Confidence 78999999999999999998889999999999855543
No 45
>PRK08815 GTP cyclohydrolase; Provisional
Probab=36.93 E-value=46 Score=35.48 Aligned_cols=37 Identities=27% Similarity=0.335 Sum_probs=32.8
Q ss_pred HHHHHhCCCCeEEeccCChHHHHHHhcCCCEEEEecc
Q 047337 48 VQMLRENRFNKLKLFEADKKILDALIGSDIEVMLAIP 84 (490)
Q Consensus 48 v~llk~~~i~~VRlY~~d~~vL~A~~~tgi~V~lGV~ 84 (490)
.|+|+..|+++||+.+.++.=+.++.+.||+|.=-++
T Consensus 305 AQIL~dLGV~kirLLTnnp~K~~~L~g~gieVv~~vp 341 (375)
T PRK08815 305 VAMLRGLGITRVRLLTNNPTKAERLRAAGIEVEDRIR 341 (375)
T ss_pred HHHHHHcCCCeEEECCCCHHHHHHHHhCCCEEEEEec
Confidence 7899999999999999999888899999999984444
No 46
>PRK09311 bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II protein; Provisional
Probab=36.42 E-value=47 Score=35.67 Aligned_cols=38 Identities=18% Similarity=0.350 Sum_probs=33.0
Q ss_pred HHHHHHhCCCCeEEeccCChHHHHHHhcCCCEEEEecc
Q 047337 47 VVQMLRENRFNKLKLFEADKKILDALIGSDIEVMLAIP 84 (490)
Q Consensus 47 vv~llk~~~i~~VRlY~~d~~vL~A~~~tgi~V~lGV~ 84 (490)
..|+|+..|+++||+.+.+|.=+.++.+.||+|.==++
T Consensus 338 gaqIL~~LGv~~irLLTnnp~K~~~L~~~GieV~~~v~ 375 (402)
T PRK09311 338 GAQILVDLGVRSMRLLTNNPRKIAGLQGYGLHVTERVP 375 (402)
T ss_pred HHHHHHHcCCCEEEECCCCHHHHHHHhhCCCEEEEEec
Confidence 37899999999999999999888899999999974444
No 47
>KOG0626 consensus Beta-glucosidase, lactase phlorizinhydrolase, and related proteins [Carbohydrate transport and metabolism]
Probab=36.09 E-value=83 Score=34.93 Aligned_cols=73 Identities=22% Similarity=0.355 Sum_probs=50.1
Q ss_pred cCCCCceEEEcccccCCCCCCC----------CCHHHHHHHHHHHHHHHHhCCCCCCCCCCccEEEeeccccc-cccCCC
Q 047337 261 AGYPDMHIIVGEVGWPTDGDKN----------ANIENAKKFSQGLLKHVLSGAGTPARKGTIDVYLFSLLDEN-AKSIAP 329 (490)
Q Consensus 261 ~g~~~~~vvVtETGWPS~G~~~----------aS~~Na~~y~~~lv~~~~s~~Gtp~rp~~~~~y~F~~FDE~-wK~~~~ 329 (490)
-.++|.+|.|+|-|-+...+.. .=++..+.|++.+.+.+.. .|+- -.-+|..++.|-- |..
T Consensus 403 ~~Y~np~iyItENG~~d~~~~~~~~~~~l~D~~Ri~Y~~~~L~~~~kAi~~-dgvn----v~GYf~WSLmDnfEw~~--- 474 (524)
T KOG0626|consen 403 DKYGNPPIYITENGFDDLDGGTKSLEVALKDTKRIEYLQNHLQAVLKAIKE-DGVN----VKGYFVWSLLDNFEWLD--- 474 (524)
T ss_pred hhcCCCcEEEEeCCCCcccccccchhhhhcchHHHHHHHHHHHHHHHHHHh-cCCc----eeeEEEeEcccchhhhc---
Confidence 3478999999999999865442 3345566777777666653 3443 2458889998833 653
Q ss_pred CCccceeEeeecC
Q 047337 330 GNFERHWGIFEYD 342 (490)
Q Consensus 330 g~~E~~wGlf~~d 342 (490)
+..-.|||++-|
T Consensus 475 -Gy~~RFGlyyVD 486 (524)
T KOG0626|consen 475 -GYKVRFGLYYVD 486 (524)
T ss_pred -CcccccccEEEe
Confidence 356789999854
No 48
>PLN02831 Bifunctional GTP cyclohydrolase II/ 3,4-dihydroxy-2-butanone-4-phosphate synthase
Probab=35.90 E-value=48 Score=36.17 Aligned_cols=37 Identities=22% Similarity=0.395 Sum_probs=32.8
Q ss_pred HHHHHhCCCCeEEeccCChHHHHHHhcCCCEEEEecc
Q 047337 48 VQMLRENRFNKLKLFEADKKILDALIGSDIEVMLAIP 84 (490)
Q Consensus 48 v~llk~~~i~~VRlY~~d~~vL~A~~~tgi~V~lGV~ 84 (490)
.|+|+..|+++||+.+.+|.=+.++.+.||+|.=-++
T Consensus 373 AqIL~dLGI~~irLLTNNp~K~~~L~~~GieVve~vp 409 (450)
T PLN02831 373 AQILRDLGVRTMRLMTNNPAKYTGLKGYGLAVVGRVP 409 (450)
T ss_pred HHHHHHcCCCEEEECCCCHHHHHHHhhCCCEEEEEec
Confidence 7899999999999999999888999999999974444
No 49
>PRK09319 bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II/unknown domain fusion protein; Provisional
Probab=35.44 E-value=49 Score=36.97 Aligned_cols=38 Identities=24% Similarity=0.423 Sum_probs=33.8
Q ss_pred HHHHHhCCCCeEEeccCChHHHHHHhcCCCEEEEeccC
Q 047337 48 VQMLRENRFNKLKLFEADKKILDALIGSDIEVMLAIPN 85 (490)
Q Consensus 48 v~llk~~~i~~VRlY~~d~~vL~A~~~tgi~V~lGV~n 85 (490)
+|+|+..||++||+.+.+|.=+.++++.||+|.==++.
T Consensus 343 AQIL~dLGI~kIrLLTNNP~Ki~~L~~~GIeVv~rvpl 380 (555)
T PRK09319 343 AQILNDLGIKRLRLITNNPRKIAGLGGYGLEVVDRVPL 380 (555)
T ss_pred HHHHHHcCCCEEEECCCCHHHHHHHHhCCCEEEEEecc
Confidence 78999999999999999999999999999999855553
No 50
>TIGR03632 bact_S11 30S ribosomal protein S11. This model describes the bacterial 30S ribosomal protein S11. Cutoffs are set such that the model excludes archaeal and eukaryotic ribosomal proteins, but many chloroplast and mitochondrial equivalents of S11 are detected.
Probab=34.74 E-value=85 Score=27.32 Aligned_cols=36 Identities=14% Similarity=0.279 Sum_probs=27.7
Q ss_pred HHHHHHHhCCCCeEEecc--CC---hHHHHHHhcCCCEEEE
Q 047337 46 NVVQMLRENRFNKLKLFE--AD---KKILDALIGSDIEVML 81 (490)
Q Consensus 46 ~vv~llk~~~i~~VRlY~--~d---~~vL~A~~~tgi~V~l 81 (490)
.+.+.++.+|++.|+++= .. ..+|++++..|++|.-
T Consensus 51 ~~~~~~~~~gi~~v~v~~kG~G~gr~~~ir~l~~~glkI~~ 91 (108)
T TIGR03632 51 DAAKKAKEFGMKTVDVYVKGPGAGRESAIRALQAAGLEVTS 91 (108)
T ss_pred HHHHHHHHcCCcEEEEEEECCCCcHHHHHHHHHHCCCEEEE
Confidence 445667778999999983 33 5799999999998653
No 51
>COG3934 Endo-beta-mannanase [Carbohydrate transport and metabolism]
Probab=34.15 E-value=1.2e+02 Score=33.52 Aligned_cols=187 Identities=14% Similarity=0.095 Sum_probs=95.0
Q ss_pred HHHHHhhccccccCCcceEEEEEecccccccCCCchhhhchHHHHHHHHHHHHHcCCCCCceEeccccccccCCCCCCCC
Q 047337 99 ASWVYANVSSYFYTGGVNIKYVAVGNEPFLRTYNDTYRYITLPALKNIQQALNDAGLGSKIKATVPFNADIYNSPESNPV 178 (490)
Q Consensus 99 ~~Wv~~~V~~~~p~~~~~I~~I~VGNEvl~~~~~~~~~~~lv~am~ni~~aL~~~gl~~~IkVsT~~~~~vl~~s~p~~~ 178 (490)
.+.|..-|.+|--. ..|.+-..-||.+.+. ......++-....+...++..+=+.-|.|+-+.+. ||+..
T Consensus 123 kkyvedlVk~yk~~--ptI~gw~l~Ne~lv~~--p~s~N~f~~w~~emy~yiK~ldd~hlvsvGD~~sp------~~~~~ 192 (587)
T COG3934 123 KKYVEDLVKPYKLD--PTIAGWALRNEPLVEA--PISVNNFWDWSGEMYAYIKWLDDGHLVSVGDPASP------WPQYA 192 (587)
T ss_pred HHHHHHHhhhhccC--hHHHHHHhcCCccccc--cCChhHHHHHHHHHHHHhhccCCCCeeecCCcCCc------ccccC
Confidence 44566667776433 5677778889976532 22245566666667777776664433555544322 23333
Q ss_pred CCCcccccchhhhHHHHHHHHhhcCCceeeecCCcccccCCCCcCcccccccCCCccccCCCccchhhHHhhhhHHHHHH
Q 047337 179 PSAGGFRDEVKDLTIGIIQFLHLNNAPFTVNIYPFLSLYGNDYFPVDFAFFEGTNKPIRDGSLLYTNVFDANFDTLVWSL 258 (490)
Q Consensus 179 Ps~g~F~~~~~~~~~~~l~fL~~~~s~~~vNiyPyf~~~~~~~~~l~yA~f~~~~~~~~d~~~~Y~nlfda~vdav~~a~ 258 (490)
|-.+.|. .|+-.-++||+|.. ++-....+..+.+ . +|- -
T Consensus 193 pyN~r~~-----------------vDya~~hLY~hyd~--sl~~r~s~~yg~~--------------~----l~i----~ 231 (587)
T COG3934 193 PYNARFY-----------------VDYAANHLYRHYDT--SLVSRVSTVYGKP--------------Y----LDI----P 231 (587)
T ss_pred Cccccee-----------------eccccchhhhhccC--Chhheeeeeecch--------------h----hcc----c
Confidence 4444332 34446788886542 2201111111110 1 110 0
Q ss_pred HHcCCCCceEEEcccccCCCCCCCCCHHHHHHHHHHHHHHHHhCCCCCCCCCCccEEEeeccccccccCCCC---Cccce
Q 047337 259 DKAGYPDMHIIVGEVGWPTDGDKNANIENAKKFSQGLLKHVLSGAGTPARKGTIDVYLFSLLDENAKSIAPG---NFERH 335 (490)
Q Consensus 259 ~k~g~~~~~vvVtETGWPS~G~~~aS~~Na~~y~~~lv~~~~s~~Gtp~rp~~~~~y~F~~FDE~wK~~~~g---~~E~~ 335 (490)
..+ +-+||+.-|-|-|++-+..-|+ .|.-- +..+....|- +--.+-|+=|-+--.. .|+ .-|-.
T Consensus 232 ~~~--g~~pV~leefGfsta~g~e~s~----ayfiw-~~lal~~ggd-----GaLiwclsdf~~gsdd-~ey~w~p~el~ 298 (587)
T COG3934 232 TIM--GWQPVNLEEFGFSTAFGQENSP----AYFIW-IRLALDTGGD-----GALIWCLSDFHLGSDD-SEYTWGPMELE 298 (587)
T ss_pred hhc--ccceeeccccCCcccccccccc----hhhhh-hhhHHhhcCC-----ceEEEEecCCccCCCC-CCCccccccce
Confidence 112 2489999999999875543332 22211 1112222111 2233445544422111 122 46889
Q ss_pred eEeeecCCceeeee
Q 047337 336 WGIFEYDGKPKYEL 349 (490)
Q Consensus 336 wGlf~~d~~~ky~l 349 (490)
|||.+.|+.+|+..
T Consensus 299 fgiIradgpek~~a 312 (587)
T COG3934 299 FGIIRADGPEKIDA 312 (587)
T ss_pred eeeecCCCchhhhH
Confidence 99999999999875
No 52
>PRK09989 hypothetical protein; Provisional
Probab=34.13 E-value=4.3e+02 Score=25.83 Aligned_cols=51 Identities=18% Similarity=0.246 Sum_probs=39.6
Q ss_pred eeEEecCCCCCCCCHHHHHHHHHhCCCCeEEec---cCC-hHHHHHHhcCCCEEEE
Q 047337 30 VGVNWGTMSTHHLPADNVVQMLRENRFNKLKLF---EAD-KKILDALIGSDIEVML 81 (490)
Q Consensus 30 ~GvnYg~~~~n~ps~~~vv~llk~~~i~~VRlY---~~d-~~vL~A~~~tgi~V~l 81 (490)
..+|.+....++ |-.+.++.+++.||+.|-+. +.+ .++.+.++++||+|..
T Consensus 4 ~~~~~~~~~~~~-~l~~~l~~~~~~Gfd~VEl~~~~~~~~~~~~~~l~~~Gl~v~~ 58 (258)
T PRK09989 4 FAANLSMMFTEV-PFIERFAAARKAGFDAVEFLFPYDYSTLQIQKQLEQNHLTLAL 58 (258)
T ss_pred eeeehhhhhcCC-CHHHHHHHHHHcCCCEEEECCcccCCHHHHHHHHHHcCCcEEE
Confidence 467777766655 46789999999999999984 333 5677788899999876
No 53
>COG1433 Uncharacterized conserved protein [Function unknown]
Probab=31.78 E-value=93 Score=27.82 Aligned_cols=40 Identities=15% Similarity=0.179 Sum_probs=36.8
Q ss_pred HHHHHHHHhCCCCeEEeccCChHHHHHHhcCCCEEEEecc
Q 047337 45 DNVVQMLRENRFNKLKLFEADKKILDALIGSDIEVMLAIP 84 (490)
Q Consensus 45 ~~vv~llk~~~i~~VRlY~~d~~vL~A~~~tgi~V~lGV~ 84 (490)
..+.++|+.+|++.|=....-+..+.+|++.||+|+.+-.
T Consensus 55 ~~~a~~l~~~gvdvvi~~~iG~~a~~~l~~~GIkv~~~~~ 94 (121)
T COG1433 55 IRIAELLVDEGVDVVIASNIGPNAYNALKAAGIKVYVAPG 94 (121)
T ss_pred HHHHHHHHHcCCCEEEECccCHHHHHHHHHcCcEEEecCC
Confidence 3679999999999999988889999999999999999987
No 54
>TIGR01579 MiaB-like-C MiaB-like tRNA modifying enzyme. This clade is a member of a subfamily (TIGR00089) and spans low GC Gram positive bacteria, alpha and epsilon proteobacteria, Campylobacter, Porphyromonas, Aquifex, Thermotoga, Chlamydia, Treponema and Fusobacterium.
Probab=31.32 E-value=5.4e+02 Score=27.29 Aligned_cols=26 Identities=8% Similarity=0.149 Sum_probs=17.2
Q ss_pred hhHHHHHHHHhhcCCceeeecCCcccc
Q 047337 190 DLTIGIIQFLHLNNAPFTVNIYPFLSL 216 (490)
Q Consensus 190 ~~~~~~l~fL~~~~s~~~vNiyPyf~~ 216 (490)
+.+...++|+.+.. +-.+++|||--.
T Consensus 305 ed~~~tl~~i~~~~-~~~~~~~~~sp~ 330 (414)
T TIGR01579 305 EDFQETLRMVKEIE-FSHLHIFPYSAR 330 (414)
T ss_pred HHHHHHHHHHHhCC-CCEEEeeecCCC
Confidence 45677788887654 446777777543
No 55
>COG4213 XylF ABC-type xylose transport system, periplasmic component [Carbohydrate transport and metabolism]
Probab=31.02 E-value=1.2e+02 Score=31.72 Aligned_cols=75 Identities=21% Similarity=0.166 Sum_probs=51.2
Q ss_pred hHHHHHHhcCCCEEEEeccCcccccccCCHHHHHHHHHhhccccccCCcceEEEEEecccccccCCCchhhhchHHHHHH
Q 047337 66 KKILDALIGSDIEVMLAIPNYMLLEMSEDPGAAASWVYANVSSYFYTGGVNIKYVAVGNEPFLRTYNDTYRYITLPALKN 145 (490)
Q Consensus 66 ~~vL~A~~~tgi~V~lGV~n~~~~~la~~~~aA~~Wv~~~V~~~~p~~~~~I~~I~VGNEvl~~~~~~~~~~~lv~am~n 145 (490)
..||+++..+|-.+.+|=.- .+ .-.++.|..|+...+..++ ++|.+|+--|.-.. ..+|
T Consensus 175 m~VLkp~idsGkik~~Ge~~--~d--~W~ps~Aq~~men~lta~~----~~vdaVvA~nDgta-----------gGaI-- 233 (341)
T COG4213 175 MKVLKPLIDSGKIKVVGEQW--TD--GWLPSNAQQIMENLLTANY----NDIDAVVAPNDGTA-----------GGAI-- 233 (341)
T ss_pred HHHHHHHhhCCceEEeeecc--cc--ccCHHHHHHHHHHHHhccc----CceeEEEcCCCchh-----------HHHH--
Confidence 46999988887544466432 22 3457889999988888775 56888877666331 2233
Q ss_pred HHHHHHHcCCCCCceEec
Q 047337 146 IQQALNDAGLGSKIKATV 163 (490)
Q Consensus 146 i~~aL~~~gl~~~IkVsT 163 (490)
++|++.||.++++||-
T Consensus 234 --~aL~a~Gl~g~vpVsG 249 (341)
T COG4213 234 --AALKAQGLAGKVPVSG 249 (341)
T ss_pred --HHHHhcccCCCCcccC
Confidence 5778899998888653
No 56
>PF04909 Amidohydro_2: Amidohydrolase; InterPro: IPR006992 These proteins are related to the metal-dependent hydrolase superfamily []. The family includes 2-amino-3-carboxymuconate-6-semialdehyde decarboxylase which converts alpha-amino-beta-carboxymuconate-epsilon- semialdehyde (ACMS) to alpha-aminomuconate semialdehyde (AMS). ACMS can be converted non-enzymatically to quinolate, a potent endogenous excitoxin of neuronal cells which is implicated in the pathogenesis of various neurodegenerative disorders. In the presence of AMCSD, ACMS is converted to AMS, a benign catabolite. 2-amino-3-(3-oxoprop-2-enyl)-but-2-enedioate = 2-aminomuconate semialdehyde + CO2. ; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 2QPX_A 4D8L_A 3K4W_I 3IRS_B 4DZI_B 3S4T_G 2GWG_B 3IJ6_A 2DVX_C 2DVT_C ....
Probab=30.71 E-value=1.3e+02 Score=28.89 Aligned_cols=54 Identities=19% Similarity=0.294 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHHHcCCCCCceEeccccccccCCCCCCCCCCCcccccchhhhHHHHHHHHhhcCCceeeec
Q 047337 140 LPALKNIQQALNDAGLGSKIKATVPFNADIYNSPESNPVPSAGGFRDEVKDLTIGIIQFLHLNNAPFTVNI 210 (490)
Q Consensus 140 v~am~ni~~aL~~~gl~~~IkVsT~~~~~vl~~s~p~~~Ps~g~F~~~~~~~~~~~l~fL~~~~s~~~vNi 210 (490)
-.+++.+.+.+...|+.+ ||+.+... .+..+-....+++++.+.+.+-|+.+++
T Consensus 84 ~~~~~~l~~~~~~~g~~G-v~l~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~pv~~H~ 137 (273)
T PF04909_consen 84 EDAVEELERALQELGFRG-VKLHPDLG----------------GFDPDDPRLDDPIFEAAEELGLPVLIHT 137 (273)
T ss_dssp HHHHHHHHHHHHTTTESE-EEEESSET----------------TCCTTSGHCHHHHHHHHHHHT-EEEEEE
T ss_pred hhHHHHHHHhccccceee-eEecCCCC----------------ccccccHHHHHHHHHHHHhhccceeeec
Confidence 357788888888888865 77655321 1111101122488999999998888874
No 57
>TIGR02631 xylA_Arthro xylose isomerase, Arthrobacter type. This model describes a D-xylose isomerase that is also active as a D-glucose isomerase. It is tetrameric and dependent on a divalent cation Mg2+, Co2+ or Mn2+ as characterized in Arthrobacter. Members of this family differ substantially from the D-xylose isomerases of family TIGR02630.
Probab=30.06 E-value=7e+02 Score=26.53 Aligned_cols=41 Identities=17% Similarity=0.209 Sum_probs=31.0
Q ss_pred CHHHHHHHHHhCCCCeEEeccCC---------------hHHHHHHhcCCCEEEEec
Q 047337 43 PADNVVQMLRENRFNKLKLFEAD---------------KKILDALIGSDIEVMLAI 83 (490)
Q Consensus 43 s~~~vv~llk~~~i~~VRlY~~d---------------~~vL~A~~~tgi~V~lGV 83 (490)
++.+.++.++..|++.|-+++.+ ..+-++++++||+|..-.
T Consensus 33 ~~~e~i~~la~~GfdgVE~~~~dl~P~~~~~~e~~~~~~~lk~~L~~~GL~v~~v~ 88 (382)
T TIGR02631 33 DPVEAVHKLAELGAYGVTFHDDDLIPFGAPPQERDQIVRRFKKALDETGLKVPMVT 88 (382)
T ss_pred CHHHHHHHHHHhCCCEEEecccccCCCCCChhHHHHHHHHHHHHHHHhCCeEEEee
Confidence 56788899999999999988532 145677889999976433
No 58
>PF14871 GHL6: Hypothetical glycosyl hydrolase 6
Probab=29.83 E-value=1.2e+02 Score=27.41 Aligned_cols=44 Identities=20% Similarity=0.276 Sum_probs=34.3
Q ss_pred CHHHHHHHHHhCCCCeEEeccC---------------------C--hHHHHHHhcCCCEEEEeccCc
Q 047337 43 PADNVVQMLRENRFNKLKLFEA---------------------D--KKILDALIGSDIEVMLAIPNY 86 (490)
Q Consensus 43 s~~~vv~llk~~~i~~VRlY~~---------------------d--~~vL~A~~~tgi~V~lGV~n~ 86 (490)
.|+++++.||..+++.|-+|.- | .++++|+.+.||+|++-+...
T Consensus 1 D~~~~~~~lk~~~v~si~i~a~~h~g~ayYPt~~~~~hp~L~~Dllge~v~a~h~~Girv~ay~~~~ 67 (132)
T PF14871_consen 1 DPEQFVDTLKEAHVNSITIFAKCHGGYAYYPTKVGPRHPGLKRDLLGEQVEACHERGIRVPAYFDFS 67 (132)
T ss_pred CHHHHHHHHHHhCCCEEEEEcccccEEEEccCCCCcCCCCCCcCHHHHHHHHHHHCCCEEEEEEeee
Confidence 3678888898888888888642 1 468899999999999877653
No 59
>PRK09852 cryptic 6-phospho-beta-glucosidase; Provisional
Probab=29.41 E-value=1.6e+02 Score=32.41 Aligned_cols=46 Identities=11% Similarity=0.298 Sum_probs=34.9
Q ss_pred HHHHHHHHhCCCCeEEe-------cc------CC-------hHHHHHHhcCCCEEEEeccCccccc
Q 047337 45 DNVVQMLRENRFNKLKL-------FE------AD-------KKILDALIGSDIEVMLAIPNYMLLE 90 (490)
Q Consensus 45 ~~vv~llk~~~i~~VRl-------Y~------~d-------~~vL~A~~~tgi~V~lGV~n~~~~~ 90 (490)
++-+++|+..|++..|+ +- .| ..++.++.+.||+.+|.+.--+++.
T Consensus 74 ~eDi~l~~~lG~~~yR~si~WsRi~P~g~~~~~n~~~~~~Y~~~i~~l~~~gi~p~VtL~H~~~P~ 139 (474)
T PRK09852 74 KEDIALMAEMGFKVFRTSIAWSRLFPQGDELTPNQQGIAFYRSVFEECKKYGIEPLVTLCHFDVPM 139 (474)
T ss_pred HHHHHHHHHcCCCeEEeeceeeeeeeCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEeeCCCCCH
Confidence 46688999988777764 31 23 3689999999999999998766654
No 60
>TIGR01233 lacG 6-phospho-beta-galactosidase. This enzyme is part of the tagatose-6-phosphate pathway of galactose-6-phosphate degradation.
Probab=29.30 E-value=1.1e+02 Score=33.40 Aligned_cols=46 Identities=13% Similarity=0.280 Sum_probs=34.8
Q ss_pred HHHHHHHHhCCCCeEEe-------cc-----CC-------hHHHHHHhcCCCEEEEeccCccccc
Q 047337 45 DNVVQMLRENRFNKLKL-------FE-----AD-------KKILDALIGSDIEVMLAIPNYMLLE 90 (490)
Q Consensus 45 ~~vv~llk~~~i~~VRl-------Y~-----~d-------~~vL~A~~~tgi~V~lGV~n~~~~~ 90 (490)
++-++||+..|++.-|+ +- .| .+++.++.+.||+-+|.+.--+++.
T Consensus 56 ~eDi~L~~~lG~~~yRfSIsWsRI~P~g~~~~N~~gl~~Y~~lid~l~~~GI~P~VTL~H~dlP~ 120 (467)
T TIGR01233 56 PVDLELAEEYGVNGIRISIAWSRIFPTGYGEVNEKGVEFYHKLFAECHKRHVEPFVTLHHFDTPE 120 (467)
T ss_pred HHHHHHHHHcCCCEEEEecchhhccCCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEeccCCCCcH
Confidence 46688999988766664 32 13 3689999999999999999766653
No 61
>cd01543 PBP1_XylR Ligand-binding domain of DNA transcription repressor specific for xylose (XylR). Ligand-binding domain of DNA transcription repressor specific for xylose (XylR), a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of XylR is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=28.48 E-value=3.9e+02 Score=25.53 Aligned_cols=36 Identities=8% Similarity=0.176 Sum_probs=21.8
Q ss_pred HHHHHHHHHhCCCCeEEeccCC---------hHHHHHHhcCCCEE
Q 047337 44 ADNVVQMLRENRFNKLKLFEAD---------KKILDALIGSDIEV 79 (490)
Q Consensus 44 ~~~vv~llk~~~i~~VRlY~~d---------~~vL~A~~~tgi~V 79 (490)
-..+++.|.++|.++|=+.+.. ....++++..|+++
T Consensus 97 g~~~~~~l~~~g~~~i~~i~~~~~~~~~~R~~gf~~~~~~~~~~~ 141 (265)
T cd01543 97 GRMAAEHFLERGFRHFAFYGLPGARWSDEREEAFRQLVAEAGYEC 141 (265)
T ss_pred HHHHHHHHHHCCCcEEEEEcCCCCHHHHHHHHHHHHHHHHcCCcc
Confidence 3455666766777777665433 12345666778776
No 62
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=28.18 E-value=1.2e+02 Score=27.49 Aligned_cols=52 Identities=13% Similarity=0.284 Sum_probs=34.8
Q ss_pred hhhHHHHHHHHcCCCCceEEEcccccCCCCCCC----------------------------CCHHHHHHHHHHHHHHHHh
Q 047337 250 NFDTLVWSLDKAGYPDMHIIVGEVGWPTDGDKN----------------------------ANIENAKKFSQGLLKHVLS 301 (490)
Q Consensus 250 ~vdav~~a~~k~g~~~~~vvVtETGWPS~G~~~----------------------------aS~~Na~~y~~~lv~~~~s 301 (490)
.++++..-++. ..++||+|++=-|||=.|... |...+...|-+.|.+++.+
T Consensus 37 v~~ai~~~l~~-~~p~KpLVlSfHG~tGtGKn~v~~liA~~ly~~G~~S~~V~~f~~~~hFP~~~~v~~Yk~~L~~~I~~ 115 (127)
T PF06309_consen 37 VVNAIKGHLAN-PNPRKPLVLSFHGWTGTGKNFVSRLIAEHLYKSGMKSPFVHQFIATHHFPHNSNVDEYKEQLKSWIRG 115 (127)
T ss_pred HHHHHHHHHcC-CCCCCCEEEEeecCCCCcHHHHHHHHHHHHHhcccCCCceeeecccccCCCchHHHHHHHHHHHHHHH
Confidence 34455444433 358999999999999877641 5556666776666666654
Q ss_pred C
Q 047337 302 G 302 (490)
Q Consensus 302 ~ 302 (490)
+
T Consensus 116 ~ 116 (127)
T PF06309_consen 116 N 116 (127)
T ss_pred H
Confidence 4
No 63
>cd00598 GH18_chitinase-like The GH18 (glycosyl hydrolase, family 18) type II chitinases hydrolyze chitin, an abundant polymer of beta-1,4-linked N-acetylglucosamine (GlcNAc) which is a major component of the cell wall of fungi and the exoskeleton of arthropods. Chitinases have been identified in viruses, bacteria, fungi, protozoan parasites, insects, and plants. The structure of the GH18 domain is an eight-stranded beta/alpha barrel with a pronounced active-site cleft at the C-terminal end of the beta-barrel. The GH18 family includes chitotriosidase, chitobiase, hevamine, zymocin-alpha, narbonin, SI-CLP (stabilin-1 interacting chitinase-like protein), IDGF (imaginal disc growth factor), CFLE (cortical fragment-lytic enzyme) spore hydrolase, the type III and type V plant chitinases, the endo-beta-N-acetylglucosaminidases, and the chitolectins. The GH85 (glycosyl hydrolase, family 85) ENGases (endo-beta-N-acetylglucosaminidases) are closely related to the GH18 chitinases and are inclu
Probab=27.66 E-value=2.1e+02 Score=26.63 Aligned_cols=85 Identities=19% Similarity=0.287 Sum_probs=45.5
Q ss_pred HHHHHHhcC--CCEEEEeccCccccc---ccCCHHHHHHHHHhhccccccCCcceEEEEEecccccccCCCchhhhchHH
Q 047337 67 KILDALIGS--DIEVMLAIPNYMLLE---MSEDPGAAASWVYANVSSYFYTGGVNIKYVAVGNEPFLRTYNDTYRYITLP 141 (490)
Q Consensus 67 ~vL~A~~~t--gi~V~lGV~n~~~~~---la~~~~aA~~Wv~~~V~~~~p~~~~~I~~I~VGNEvl~~~~~~~~~~~lv~ 141 (490)
.-++.+++. |+||++.|....... +.++.+..++.++ ++..+..+ -.+.+|-+==|..... .......++.
T Consensus 53 ~~i~~l~~~~~g~kv~~sigg~~~~~~~~~~~~~~~~~~f~~-~~~~~v~~--~~~DGidiD~E~~~~~-~~~~~~~~~~ 128 (210)
T cd00598 53 GALEELASKKPGLKVLISIGGWTDSSPFTLASDPASRAAFAN-SLVSFLKT--YGFDGVDIDWEYPGAA-DNSDRENFIT 128 (210)
T ss_pred HHHHHHHHhCCCCEEEEEEcCCCCCCCchhhcCHHHHHHHHH-HHHHHHHH--cCCCceEEeeeCCCCc-CccHHHHHHH
Confidence 345555554 999999988644322 3445444444332 33333322 2344444433443211 1011356888
Q ss_pred HHHHHHHHHHHcCC
Q 047337 142 ALKNIQQALNDAGL 155 (490)
Q Consensus 142 am~ni~~aL~~~gl 155 (490)
.|+.+|++|.+.++
T Consensus 129 ll~~lr~~l~~~~~ 142 (210)
T cd00598 129 LLRELRSALGAANY 142 (210)
T ss_pred HHHHHHHHhcccCc
Confidence 99999999977654
No 64
>PRK07198 hypothetical protein; Validated
Probab=27.50 E-value=53 Score=35.17 Aligned_cols=37 Identities=27% Similarity=0.370 Sum_probs=33.1
Q ss_pred HHHHHhCCCCeE-EeccCChHHHHHHhcCCCEEEEecc
Q 047337 48 VQMLRENRFNKL-KLFEADKKILDALIGSDIEVMLAIP 84 (490)
Q Consensus 48 v~llk~~~i~~V-RlY~~d~~vL~A~~~tgi~V~lGV~ 84 (490)
.|.|+.+||++| |+.+.++.=+.++.+.||+|.==|+
T Consensus 338 AQILrdLGV~Km~RLLTNnp~K~~gL~GfGLEVVErVp 375 (418)
T PRK07198 338 PDVLHWLGIRRIHRLVSMSNMKYDAITGSGIEVGERVP 375 (418)
T ss_pred HHHHHHhCCChhhhhcCCCHHHHHHHHhCCCEEEEEec
Confidence 788999999999 9999999888999999999985554
No 65
>TIGR03628 arch_S11P archaeal ribosomal protein S11P. This model describes exclusively the archaeal ribosomal protein S11P. It excludes homologous ribosomal proteins S14 from eukaryotes and S11 from bacteria.
Probab=26.80 E-value=1.4e+02 Score=26.55 Aligned_cols=36 Identities=11% Similarity=0.202 Sum_probs=27.5
Q ss_pred HHHHHHHHhCCCCeEEec--c--------CC---hHHHHHHhcCCCEEE
Q 047337 45 DNVVQMLRENRFNKLKLF--E--------AD---KKILDALIGSDIEVM 80 (490)
Q Consensus 45 ~~vv~llk~~~i~~VRlY--~--------~d---~~vL~A~~~tgi~V~ 80 (490)
+++.+.++.+|++.|+++ + +. ..+|++++..||+|.
T Consensus 53 ~~~~~~~~~~Gi~~v~v~ikG~gg~~~~~~G~Gr~~air~l~~~glkI~ 101 (114)
T TIGR03628 53 GRAAEKAKERGITGLHIKVRAPGGNGQKSPGPGAQAAIRALARAGLRIG 101 (114)
T ss_pred HHHHHHHHHcCCcEEEEEEEecCCCCCCCCCCcHHHHHHHHHHCCCEEE
Confidence 445666777899988887 3 22 579999999999975
No 66
>KOG0078 consensus GTP-binding protein SEC4, small G protein superfamily, and related Ras family GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=26.15 E-value=1.1e+02 Score=30.04 Aligned_cols=83 Identities=14% Similarity=0.211 Sum_probs=50.3
Q ss_pred CCeeeEEecCCCCCCCCHHHHHHHHHhCCCCeEEeccCC-----hHHHHHHhcCCCEEEEeccCcccccccCCHHHHHHH
Q 047337 27 GDGVGVNWGTMSTHHLPADNVVQMLRENRFNKLKLFEAD-----KKILDALIGSDIEVMLAIPNYMLLEMSEDPGAAASW 101 (490)
Q Consensus 27 ~~~~GvnYg~~~~n~ps~~~vv~llk~~~i~~VRlY~~d-----~~vL~A~~~tgi~V~lGV~n~~~~~la~~~~aA~~W 101 (490)
-+.+||-|-...=.++. .--+++|||+- ..+..+....-+.+++..-.....++ +....|
T Consensus 42 ~sTiGIDFk~kti~l~g-----------~~i~lQiWDtaGQerf~ti~~sYyrgA~gi~LvyDitne~Sf----eni~~W 106 (207)
T KOG0078|consen 42 ISTIGIDFKIKTIELDG-----------KKIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDITNEKSF----ENIRNW 106 (207)
T ss_pred cceEEEEEEEEEEEeCC-----------eEEEEEEEEcccchhHHHHHHHHHhhcCeeEEEEEccchHHH----HHHHHH
Confidence 34677777644333443 12467888875 45777765544555555444333333 455668
Q ss_pred HHhhccccccCCcceEEEEEecccccc
Q 047337 102 VYANVSSYFYTGGVNIKYVAVGNEPFL 128 (490)
Q Consensus 102 v~~~V~~~~p~~~~~I~~I~VGNEvl~ 128 (490)
++ +|..+.+ ..+.-|.|||-.=.
T Consensus 107 ~~-~I~e~a~---~~v~~~LvGNK~D~ 129 (207)
T KOG0078|consen 107 IK-NIDEHAS---DDVVKILVGNKCDL 129 (207)
T ss_pred HH-HHHhhCC---CCCcEEEeeccccc
Confidence 76 4777765 57788999998643
No 67
>PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=25.40 E-value=6e+02 Score=24.73 Aligned_cols=89 Identities=17% Similarity=0.251 Sum_probs=51.8
Q ss_pred CCHHHHHHHHHhCCCCeEEeccCC---hHHHHHHhc--CCCEEEEeccCcccccccCCHHHHHHHHHhhccccccCCcce
Q 047337 42 LPADNVVQMLRENRFNKLKLFEAD---KKILDALIG--SDIEVMLAIPNYMLLEMSEDPGAAASWVYANVSSYFYTGGVN 116 (490)
Q Consensus 42 ps~~~vv~llk~~~i~~VRlY~~d---~~vL~A~~~--tgi~V~lGV~n~~~~~la~~~~aA~~Wv~~~V~~~~p~~~~~ 116 (490)
-+++|+.+.++ .|.+.|++|-++ ++-++++++ .+++++. ...+ +.+.+.+|++ .-
T Consensus 117 ~T~~E~~~A~~-~Gad~vklFPa~~~G~~~ik~l~~~~p~ip~~a---tGGI-----~~~N~~~~l~-----------aG 176 (213)
T PRK06552 117 MTVTEIVTALE-AGSEIVKLFPGSTLGPSFIKAIKGPLPQVNVMV---TGGV-----NLDNVKDWFA-----------AG 176 (213)
T ss_pred CCHHHHHHHHH-cCCCEEEECCcccCCHHHHHHHhhhCCCCEEEE---ECCC-----CHHHHHHHHH-----------CC
Confidence 36788877764 789999999655 567777764 2355442 2222 2355566655 23
Q ss_pred EEEEEecccccccCCCchhhhchHHHHHHHHHHHH
Q 047337 117 IKYVAVGNEPFLRTYNDTYRYITLPALKNIQQALN 151 (490)
Q Consensus 117 I~~I~VGNEvl~~~~~~~~~~~lv~am~ni~~aL~ 151 (490)
+.++.||+..+.....++ ++.+-...+.++++++
T Consensus 177 a~~vavgs~l~~~~~~~~-~~~i~~~a~~~~~~~~ 210 (213)
T PRK06552 177 ADAVGIGGELNKLASQGD-FDLITEKAKKYMSSLR 210 (213)
T ss_pred CcEEEEchHHhCccccCC-HHHHHHHHHHHHHHHH
Confidence 457888988764211122 2345555555555443
No 68
>PF14488 DUF4434: Domain of unknown function (DUF4434)
Probab=25.15 E-value=60 Score=30.38 Aligned_cols=21 Identities=24% Similarity=0.189 Sum_probs=18.6
Q ss_pred hHHHHHHhcCCCEEEEeccCc
Q 047337 66 KKILDALIGSDIEVMLAIPNY 86 (490)
Q Consensus 66 ~~vL~A~~~tgi~V~lGV~n~ 86 (490)
..+|+++.+.||||++|++.+
T Consensus 68 ~~~L~~A~~~Gmkv~~Gl~~~ 88 (166)
T PF14488_consen 68 EMILDAADKYGMKVFVGLYFD 88 (166)
T ss_pred HHHHHHHHHcCCEEEEeCCCC
Confidence 368899999999999999965
No 69
>COG0807 RibA GTP cyclohydrolase II [Coenzyme metabolism]
Probab=24.99 E-value=1.2e+02 Score=29.26 Aligned_cols=39 Identities=23% Similarity=0.413 Sum_probs=35.4
Q ss_pred HHHHHhCCCCeEEeccCChHHHHHHhcCCCEEEEeccCc
Q 047337 48 VQMLRENRFNKLKLFEADKKILDALIGSDIEVMLAIPNY 86 (490)
Q Consensus 48 v~llk~~~i~~VRlY~~d~~vL~A~~~tgi~V~lGV~n~ 86 (490)
+|+|+..||++||+-+.+|.=..++.+.||+|.=-+++.
T Consensus 133 AqIL~dLGI~~irLLtnnp~K~~~l~~~Gi~vverv~~~ 171 (193)
T COG0807 133 AQILKDLGIKKIRLLTNNPRKIYGLEGFGINVVERVPLI 171 (193)
T ss_pred HHHHHHcCCcEEEEecCChHHHHHHHhCCceEEEEeecC
Confidence 678999999999999999988899999999999888875
No 70
>PF06180 CbiK: Cobalt chelatase (CbiK); InterPro: IPR010388 This group, typified by Salmonella typhimurium CbiK, contains anaerobic cobalt chelatases that act in the anaerobic cobalamin biosynthesis pathway [, ]. Cobalamin (vitamin B12) can be complexed with metal via ATP-dependent reactions (aerobic pathway) (e.g., in Pseudomonas denitrificans) or via ATP-independent reactions (anaerobic pathway) (e.g., in S. typhimurium) [, ]. The corresponding cobalt chelatases are not homologous. This group belongs to the class of ATP-independent, single-subunit chelatases that also includes distantly related protoporphyrin IX (PPIX) ferrochelatase (HemH) (Class II chelatases) []. The structure of S. typhimurium CbiK shows that it has a remarkably similar topology to Bacillus subtilis ferrochelatase despite only weak sequence conservation []. Both enzymes contain a histidine residue identified as the metal ion ligand, but CbiK contains a second histidine in place of the glutamic acid residue identified as a general base in PPIX ferrochelatase []. Site-directed mutagenesis has confirmed a role for this histidine and a nearby glutamic acid in cobalt binding, modulating metal ion specificity as well as catalytic efficiency []. It should be noted that CysG and Met8p, which are multifunctional proteins associated with siroheme biosynthesis, include chelatase activity and can therefore be considered as the third class of chelatases []. As with the class II chelatases, they do not require ATP for activity. However, they are not structurally similar to HemH or CbiK, and it is likely that they have arisen by the acquisition of a chelatase function within a dehydrogenase catalytic framework [, ].; GO: 0016852 sirohydrochlorin cobaltochelatase activity; PDB: 1QGO_A 2XWP_A 2XVZ_A 2XVX_A 2XVY_A.
Probab=24.83 E-value=7.3e+02 Score=25.05 Aligned_cols=141 Identities=13% Similarity=0.135 Sum_probs=69.1
Q ss_pred CCCCHHHHHHHHHhCCCCeEEeccCC-------hHHHH---HHhcCCCEEEEeccCcccccccCCHHHHHHHHHhhcccc
Q 047337 40 HHLPADNVVQMLRENRFNKLKLFEAD-------KKILD---ALIGSDIEVMLAIPNYMLLEMSEDPGAAASWVYANVSSY 109 (490)
Q Consensus 40 n~ps~~~vv~llk~~~i~~VRlY~~d-------~~vL~---A~~~tgi~V~lGV~n~~~~~la~~~~aA~~Wv~~~V~~~ 109 (490)
+.++|.++.+.|+..|+++|-+-.+. ..+++ .++..--++.+|-|.=......++.+..+. +.+.+..-
T Consensus 56 ~i~~~~eaL~~L~~~G~~~V~VQplhiipG~Ey~~l~~~v~~~~~~F~~i~~g~PLL~~~g~~~~~~D~~~-va~aL~~~ 134 (262)
T PF06180_consen 56 KIDSPEEALAKLADEGYTEVVVQPLHIIPGEEYEKLRATVEAYKHDFKKIVLGRPLLYTMGQENSPEDYEA-VAEALAEE 134 (262)
T ss_dssp ----HHHHHHHHHHCT--EEEEEE--SCSSHHHHHHHHHHHHHCCCSSEEEEE--SCSS-----SHHHHHH-HHHHHHCC
T ss_pred CcCCHHHHHHHHHHCCCCEEEEeecceeCcHhHHHHHHHHHHhhccCCeEEecccccccccccCChHHHHH-HHHHHHHh
Confidence 57999999999999999999998876 23443 344444589999886221011112222111 33344444
Q ss_pred ccC--CcceEEEEEecccccccCCCchhhhchHHHHHHHHHHHHHcCCCCCceEeccccccccCCCCCCCCCCCcccccc
Q 047337 110 FYT--GGVNIKYVAVGNEPFLRTYNDTYRYITLPALKNIQQALNDAGLGSKIKATVPFNADIYNSPESNPVPSAGGFRDE 187 (490)
Q Consensus 110 ~p~--~~~~I~~I~VGNEvl~~~~~~~~~~~lv~am~ni~~aL~~~gl~~~IkVsT~~~~~vl~~s~p~~~Ps~g~F~~~ 187 (490)
+|. ....+..+-=||+-.. . .+-..++..|++.++. ++-|+|... +| +
T Consensus 135 ~~~~~~~~a~vlmGHGt~h~a--------n---~~Y~~l~~~l~~~~~~-~v~vgtvEG-------~P----~------- 184 (262)
T PF06180_consen 135 FPKKRKDEAVVLMGHGTPHPA--------N---AAYSALQAMLKKHGYP-NVFVGTVEG-------YP----S------- 184 (262)
T ss_dssp S-TT-TTEEEEEEE---SCHH--------H---HHHHHHHHHHHCCT-T-TEEEEETTS-------SS----B-------
T ss_pred ccccCCCCEEEEEeCCCCCCc--------c---HHHHHHHHHHHhCCCC-eEEEEEeCC-------CC----C-------
Confidence 441 1245656666676431 1 1223446778887764 488888742 43 2
Q ss_pred hhhhHHHHHHHHhhcCCceeeecCCcccc
Q 047337 188 VKDLTIGIIQFLHLNNAPFTVNIYPFLSL 216 (490)
Q Consensus 188 ~~~~~~~~l~fL~~~~s~~~vNiyPyf~~ 216 (490)
+..+++.|...+ +=-|.+.||.--
T Consensus 185 ----~~~vi~~L~~~g-~k~V~L~PlMlV 208 (262)
T PF06180_consen 185 ----LEDVIARLKKKG-IKKVHLIPLMLV 208 (262)
T ss_dssp ----HHHHHHHHHHHT--SEEEEEEESSS
T ss_pred ----HHHHHHHHHhcC-CCeEEEEecccc
Confidence 345556665433 224788898754
No 71
>smart00636 Glyco_18 Glycosyl hydrolase family 18.
Probab=24.78 E-value=5.8e+02 Score=25.90 Aligned_cols=80 Identities=20% Similarity=0.271 Sum_probs=42.6
Q ss_pred HHHHhc--CCCEEEEeccCc----ccccccCCHHHHHHHHHhhccccccCCcceEEEEEecccccccCCCchhhhchHHH
Q 047337 69 LDALIG--SDIEVMLAIPNY----MLLEMSEDPGAAASWVYANVSSYFYTGGVNIKYVAVGNEPFLRTYNDTYRYITLPA 142 (490)
Q Consensus 69 L~A~~~--tgi~V~lGV~n~----~~~~la~~~~aA~~Wv~~~V~~~~p~~~~~I~~I~VGNEvl~~~~~~~~~~~lv~a 142 (490)
+.++++ .++||++.|... ....+.++.+.-+++++ +|..++.. -...+|-+==|.... .++....++.-
T Consensus 57 ~~~l~~~~~~~kvl~svgg~~~s~~f~~~~~~~~~r~~fi~-~i~~~~~~--~~~DGidiDwE~~~~--~~~d~~~~~~l 131 (334)
T smart00636 57 LKALKKKNPGLKVLLSIGGWTESDNFSSMLSDPASRKKFID-SIVSFLKK--YGFDGIDIDWEYPGA--RGDDRENYTAL 131 (334)
T ss_pred HHHHHHhCCCCEEEEEEeCCCCCcchhHHHCCHHHHHHHHH-HHHHHHHH--cCCCeEEECCcCCCC--CccHHHHHHHH
Confidence 445554 489999988652 23344444433333332 33333332 335566554444321 00113457788
Q ss_pred HHHHHHHHHHc
Q 047337 143 LKNIQQALNDA 153 (490)
Q Consensus 143 m~ni~~aL~~~ 153 (490)
|+.+|+.|.+.
T Consensus 132 l~~lr~~l~~~ 142 (334)
T smart00636 132 LKELREALDKE 142 (334)
T ss_pred HHHHHHHHHHh
Confidence 89999999865
No 72
>CHL00041 rps11 ribosomal protein S11
Probab=24.52 E-value=1.6e+02 Score=25.94 Aligned_cols=35 Identities=11% Similarity=0.267 Sum_probs=26.6
Q ss_pred HHHHHHHhCCCCeEEecc--C--C-hHHHHHHhcCCCEEE
Q 047337 46 NVVQMLRENRFNKLKLFE--A--D-KKILDALIGSDIEVM 80 (490)
Q Consensus 46 ~vv~llk~~~i~~VRlY~--~--d-~~vL~A~~~tgi~V~ 80 (490)
.+.+.++..|++.|+++= . . ..++++++..|++|.
T Consensus 64 ~~~~~~~~~gi~~v~I~ikG~G~Gr~~~ir~l~~~glkI~ 103 (116)
T CHL00041 64 NAIRTVIDQGMKRAEVMIKGPGLGRDTALRAIRRSGLKLS 103 (116)
T ss_pred HHHHHHHHcCCcEEEEEEECCCCcHHHHHHHHHHCCCEEE
Confidence 345566778999998883 3 2 579999999999875
No 73
>PF14587 Glyco_hydr_30_2: O-Glycosyl hydrolase family 30; PDB: 3CLW_B.
Probab=24.44 E-value=2.3e+02 Score=30.33 Aligned_cols=97 Identities=22% Similarity=0.254 Sum_probs=51.3
Q ss_pred HHHHHHhcCCCEEEEeccCcccc----------------cccCC-HHHHHHHHHhhccccccCCcceEEEEEeccccccc
Q 047337 67 KILDALIGSDIEVMLAIPNYMLL----------------EMSED-PGAAASWVYANVSSYFYTGGVNIKYVAVGNEPFLR 129 (490)
Q Consensus 67 ~vL~A~~~tgi~V~lGV~n~~~~----------------~la~~-~~aA~~Wv~~~V~~~~p~~~~~I~~I~VGNEvl~~ 129 (490)
-.|+++++.|++.+++..|+..- .+..+ .++=...+.+ |..++...+..|++|.-=||+-..
T Consensus 108 wfL~~Ak~rGV~~f~aFSNSPP~~MT~NG~~~g~~~~~~NLk~d~y~~FA~YLa~-Vv~~~~~~GI~f~~IsP~NEP~~~ 186 (384)
T PF14587_consen 108 WFLKAAKERGVNIFEAFSNSPPWWMTKNGSASGGDDGSDNLKPDNYDAFADYLAD-VVKHYKKWGINFDYISPFNEPQWN 186 (384)
T ss_dssp HHHHHHHHTT---EEEE-SSS-GGGSSSSSSB-S-SSS-SS-TT-HHHHHHHHHH-HHHHHHCTT--EEEEE--S-TTS-
T ss_pred HHHHHHHHcCCCeEEEeecCCCHHHhcCCCCCCCCccccccChhHHHHHHHHHHH-HHHHHHhcCCccceeCCcCCCCCC
Confidence 58899999999999998885211 11111 1122233443 333444456899999999999876
Q ss_pred CCC--ch----hhhchHHHHHHHHHHHHHcCCCCCceEecc
Q 047337 130 TYN--DT----YRYITLPALKNIQQALNDAGLGSKIKATVP 164 (490)
Q Consensus 130 ~~~--~~----~~~~lv~am~ni~~aL~~~gl~~~IkVsT~ 164 (490)
+.. ++ ..++....|+.++++|++.||..+|-+.-+
T Consensus 187 W~~~~QEG~~~~~~e~a~vI~~L~~~L~~~GL~t~I~~~Ea 227 (384)
T PF14587_consen 187 WAGGSQEGCHFTNEEQADVIRALDKALKKRGLSTKISACEA 227 (384)
T ss_dssp GG--SS-B----HHHHHHHHHHHHHHHHHHT-S-EEEEEEE
T ss_pred CCCCCcCCCCCCHHHHHHHHHHHHHHHHhcCCCceEEecch
Confidence 421 11 146678888899999999999654444333
No 74
>PF02811 PHP: PHP domain; InterPro: IPR004013 The PHP (Polymerase and Histidinol Phosphatase) domain is a putative phosphoesterase domain. This family is often associated with an N-terminal region IPR003141 from INTERPRO.; GO: 0003824 catalytic activity; PDB: 2WJE_A 3QY8_A 2WJD_A 2WJF_A 1PB0_B 1M68_A 1M65_A 3E38_B 2W9M_A 3E0F_A ....
Probab=24.24 E-value=1.4e+02 Score=26.79 Aligned_cols=45 Identities=9% Similarity=0.194 Sum_probs=37.0
Q ss_pred CCCHHHHHHHHHhCCCCeEEeccCC-----hHHHHHHhcCCCEEEEeccC
Q 047337 41 HLPADNVVQMLRENRFNKLKLFEAD-----KKILDALIGSDIEVMLAIPN 85 (490)
Q Consensus 41 ~ps~~~vv~llk~~~i~~VRlY~~d-----~~vL~A~~~tgi~V~lGV~n 85 (490)
..+++++++..++.|++.|=+=|-+ +...+.++..||+|++|+-.
T Consensus 15 ~~~~~e~v~~A~~~Gl~~i~iTDH~~~~~~~~~~~~~~~~~i~vi~G~E~ 64 (175)
T PF02811_consen 15 KDSPEEYVEQAKEKGLDAIAITDHNNFAGYPDFYKEAKKKGIKVIPGVEI 64 (175)
T ss_dssp SSSHHHHHHHHHHTTESEEEEEEETTTTTHHHHHHHHHHTTSEEEEEEEE
T ss_pred cCCHHHHHHHHHHcCCCEEEEcCCcccccchHHHHHHHhcCCceEEeEee
Confidence 3488999999999999888887654 45667777899999999986
No 75
>PF00411 Ribosomal_S11: Ribosomal protein S11; InterPro: IPR001971 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Ribosomal protein S11 [] plays an essential role in selecting the correct tRNA in protein biosynthesis. It is located on the large lobe of the small ribosomal subunit. On the basis of sequence similarities, S11 belongs to a family of bacterial, archaeal and eukaryotic ribosomal proteins [].; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 2YKR_K 3U5C_O 3O2Z_H 3IZB_K 3U5G_O 3O30_H 1S1H_K 3BBN_K 2XZN_K 2XZM_K ....
Probab=24.13 E-value=1.2e+02 Score=26.44 Aligned_cols=35 Identities=14% Similarity=0.220 Sum_probs=26.3
Q ss_pred HHHHHHhCCCCeEEec--cCC---hHHHHHHhcCCCEEEE
Q 047337 47 VVQMLRENRFNKLKLF--EAD---KKILDALIGSDIEVML 81 (490)
Q Consensus 47 vv~llk~~~i~~VRlY--~~d---~~vL~A~~~tgi~V~l 81 (490)
+.+.++..|++.|+++ +.. ..+|++++.+|++|.-
T Consensus 52 ~~~~~~~~gi~~v~v~ikG~g~gr~~~lk~l~~~gl~I~~ 91 (110)
T PF00411_consen 52 IAKKAKELGIKTVRVKIKGFGPGREAALKALKKSGLKIVS 91 (110)
T ss_dssp HHHHHHCTTEEEEEEEEESSSTTHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHcCCeEEEEEEcCCCccHHHHHHHHHhcCCEEEE
Confidence 4556677899998888 333 5799999999998653
No 76
>PRK09607 rps11p 30S ribosomal protein S11P; Reviewed
Probab=22.74 E-value=1.7e+02 Score=26.55 Aligned_cols=36 Identities=8% Similarity=0.200 Sum_probs=27.6
Q ss_pred HHHHHHHHhCCCCeEEec--c--------CC---hHHHHHHhcCCCEEE
Q 047337 45 DNVVQMLRENRFNKLKLF--E--------AD---KKILDALIGSDIEVM 80 (490)
Q Consensus 45 ~~vv~llk~~~i~~VRlY--~--------~d---~~vL~A~~~tgi~V~ 80 (490)
+++.+.++.+|++.|+++ + .. ..+|++++..||+|.
T Consensus 60 e~~~~~~~~~Gi~~v~v~vkG~Ggn~~~~~G~Gr~~airal~~~glkI~ 108 (132)
T PRK09607 60 EKAAEDAKEKGITGVHIKVRAPGGNGQKSPGPGAQAAIRALARAGLRIG 108 (132)
T ss_pred HHHHHHHHHcCCcEEEEEEEecCCCCCcCCCCcHHHHHHHHHHCCCEEE
Confidence 345666778899998887 3 23 479999999999975
No 77
>TIGR03234 OH-pyruv-isom hydroxypyruvate isomerase. This enzyme interconverts tartronate semi-aldehyde (TSA, aka 2-hydroxy 3-oxopropionate) and hydroxypyruvate. The E. coli enzyme has been characterized and found to be specific for TSA, contain no cofactors, and have a rather high Km for hydroxypyruvate of 12.5 mM. The gene is ofter found in association with glyoxalate carboligase (which produces TSA), but has been shown to have no effect on growth on glyoxalate when knocked out. This is consistent with the fact that the gene for tartronate semialdehyde reductase (glxR) is also associated and may have primary responsibility for the catabolism of TSA.
Probab=22.69 E-value=1.9e+02 Score=28.10 Aligned_cols=51 Identities=16% Similarity=0.205 Sum_probs=38.9
Q ss_pred eeEEecCCCCCCCCHHHHHHHHHhCCCCeEEeccC---C-hHHHHHHhcCCCEEEE
Q 047337 30 VGVNWGTMSTHHLPADNVVQMLRENRFNKLKLFEA---D-KKILDALIGSDIEVML 81 (490)
Q Consensus 30 ~GvnYg~~~~n~ps~~~vv~llk~~~i~~VRlY~~---d-~~vL~A~~~tgi~V~l 81 (490)
+.||++..-..+ +.+++++.++..||+.|-++.. + .++.+.++++|++|..
T Consensus 3 ~~~~~~~~~~~~-~l~e~~~~~~e~G~~~vEl~~~~~~~~~~l~~~l~~~gl~v~~ 57 (254)
T TIGR03234 3 FAANLSMLFTEL-PFLERFAAAAQAGFTGVEYLFPYDWDAEALKARLAAAGLEQVL 57 (254)
T ss_pred eeEehhHhhcCC-CHHHHHHHHHHcCCCEEEecCCccCCHHHHHHHHHHcCCeEEE
Confidence 567877655444 5789999999999999999742 2 4577788899999763
No 78
>PF00331 Glyco_hydro_10: Glycosyl hydrolase family 10; InterPro: IPR001000 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 10 GH10 from CAZY comprises enzymes with a number of known activities; xylanase (3.2.1.8 from EC); endo-1,3-beta-xylanase (3.2.1.32 from EC); cellobiohydrolase (3.2.1.91 from EC). These enzymes were formerly known as cellulase family F. The microbial degradation of cellulose and xylans requires several types of enzymes such as endoglucanases (3.2.1.4 from EC), cellobiohydrolases (3.2.1.91 from EC) (exoglucanases), or xylanases (3.2.1.8 from EC) [, ]. Fungi and bacteria produces a spectrum of cellulolytic enzymes (cellulases) and xylanases which, on the basis of sequence similarities, can be classified into families. One of these families is known as the cellulase family F [] or as the glycosyl hydrolases family 10 []. ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1UQZ_A 1UQY_A 1UR2_A 1UR1_A 2CNC_A 1OD8_A 1E0W_A 1E0V_A 1V0M_A 1E0X_B ....
Probab=22.08 E-value=1.3e+02 Score=31.02 Aligned_cols=90 Identities=18% Similarity=0.240 Sum_probs=50.3
Q ss_pred hHHHHHHHHcCCCCceEEEcccccCCCCCC--CCCHHHHHHHHHHHHHHHHhCCCCCCCCCCccEEEeeccccc-cccCC
Q 047337 252 DTLVWSLDKAGYPDMHIIVGEVGWPTDGDK--NANIENAKKFSQGLLKHVLSGAGTPARKGTIDVYLFSLLDEN-AKSIA 328 (490)
Q Consensus 252 dav~~a~~k~g~~~~~vvVtETGWPS~G~~--~aS~~Na~~y~~~lv~~~~s~~Gtp~rp~~~~~y~F~~FDE~-wK~~~ 328 (490)
+.+...|+++.--+++|.|||--=...... ....+.++.+++.+++.+.+.. |. .-..+.+..+.|.. |.+..
T Consensus 220 ~~i~~~l~~~~~~Gl~i~ITElDv~~~~~~~~~~~~~~qA~~~~~~~~~~~~~~--~~--~v~git~Wg~~D~~sW~~~~ 295 (320)
T PF00331_consen 220 EQIWNALDRFASLGLPIHITELDVRDDDNPPDAEEEEAQAEYYRDFLTACFSHP--PA--AVEGITWWGFTDGYSWRPDT 295 (320)
T ss_dssp HHHHHHHHHHHTTTSEEEEEEEEEESSSTTSCHHHHHHHHHHHHHHHHHHHHTT--HC--TEEEEEESSSBTTGSTTGGH
T ss_pred HHHHHHHHHHHHcCCceEEEeeeecCCCCCcchHHHHHHHHHHHHHHHHHHhCC--cc--CCCEEEEECCCCCCcccCCC
Confidence 344445555544569999999754433322 1346678889999999888752 00 12334455566644 66421
Q ss_pred CCCccceeEeeecCCceeee
Q 047337 329 PGNFERHWGIFEYDGKPKYE 348 (490)
Q Consensus 329 ~g~~E~~wGlf~~d~~~ky~ 348 (490)
+ -.+=+||+.|.+||..
T Consensus 296 ~---~~~~~lfd~~~~~Kpa 312 (320)
T PF00331_consen 296 P---PDRPLLFDEDYQPKPA 312 (320)
T ss_dssp S---EG--SSB-TTSBB-HH
T ss_pred C---CCCCeeECCCcCCCHH
Confidence 0 1233688888888854
No 79
>PF15513 DUF4651: Domain of unknown function (DUF4651)
Probab=21.57 E-value=2.1e+02 Score=22.64 Aligned_cols=39 Identities=23% Similarity=0.431 Sum_probs=32.0
Q ss_pred CCccEEEeeccccccccCCCC---CccceeEeeecCCceeee
Q 047337 310 GTIDVYLFSLLDENAKSIAPG---NFERHWGIFEYDGKPKYE 348 (490)
Q Consensus 310 ~~~~~y~F~~FDE~wK~~~~g---~~E~~wGlf~~d~~~ky~ 348 (490)
|.|.+-++..|..+-+...+| +-+|||..-+.+|...|.
T Consensus 19 G~I~vLYvn~~eS~~~~~~GGvV~eDgR~y~F~Y~~G~i~Ye 60 (62)
T PF15513_consen 19 GEIAVLYVNPYESDEDRLTGGVVMEDGRHYTFVYENGQISYE 60 (62)
T ss_pred CcEEEEEEcccccCCCeEeccEEEeCCCEEEEEEeCCcEEEe
Confidence 379999999998887765556 469999999999988874
No 80
>cd06545 GH18_3CO4_chitinase The Bacteroides thetaiotaomicron protein represented by pdb structure 3CO4 is an uncharacterized bacterial member of the family 18 glycosyl hydrolases with homologs found in Flavobacterium, Stigmatella, and Pseudomonas.
Probab=21.28 E-value=2e+02 Score=28.29 Aligned_cols=81 Identities=16% Similarity=0.176 Sum_probs=45.7
Q ss_pred HHHHHHhcCCCEEEEeccCcccc---cccCCHHHHHHHHHhhccccccCCcceEEEEEecccccccCCCchhhhchHHHH
Q 047337 67 KILDALIGSDIEVMLAIPNYMLL---EMSEDPGAAASWVYANVSSYFYTGGVNIKYVAVGNEPFLRTYNDTYRYITLPAL 143 (490)
Q Consensus 67 ~vL~A~~~tgi~V~lGV~n~~~~---~la~~~~aA~~Wv~~~V~~~~p~~~~~I~~I~VGNEvl~~~~~~~~~~~lv~am 143 (490)
..+++++..|+||++.|...... .+.++++..++++++ |..++.+ -.+.+|-+==|-... . ......-+
T Consensus 50 ~~~~~~~~~~~kvl~sigg~~~~~~~~~~~~~~~r~~fi~~-lv~~~~~--~~~DGIdiDwE~~~~----~-~~~~~~fv 121 (253)
T cd06545 50 SVVNAAHAHNVKILISLAGGSPPEFTAALNDPAKRKALVDK-IINYVVS--YNLDGIDVDLEGPDV----T-FGDYLVFI 121 (253)
T ss_pred HHHHHHHhCCCEEEEEEcCCCCCcchhhhcCHHHHHHHHHH-HHHHHHH--hCCCceeEEeeccCc----c-HhHHHHHH
Confidence 45667777899999888764322 244455544444433 3333322 234445444454321 1 23456778
Q ss_pred HHHHHHHHHcCC
Q 047337 144 KNIQQALNDAGL 155 (490)
Q Consensus 144 ~ni~~aL~~~gl 155 (490)
+++|++|++.|+
T Consensus 122 ~~Lr~~l~~~~~ 133 (253)
T cd06545 122 RALYAALKKEGK 133 (253)
T ss_pred HHHHHHHhhcCc
Confidence 999999988664
No 81
>PRK05309 30S ribosomal protein S11; Validated
Probab=21.19 E-value=2.1e+02 Score=25.81 Aligned_cols=35 Identities=17% Similarity=0.373 Sum_probs=27.0
Q ss_pred HHHHHHHhCCCCeEEecc--CC---hHHHHHHhcCCCEEE
Q 047337 46 NVVQMLRENRFNKLKLFE--AD---KKILDALIGSDIEVM 80 (490)
Q Consensus 46 ~vv~llk~~~i~~VRlY~--~d---~~vL~A~~~tgi~V~ 80 (490)
.+.+.++..|++.|+++= .. ..+|.+++..|++|.
T Consensus 68 ~~~~~~~~~gi~~v~v~ikG~G~Gr~~air~L~~~glkI~ 107 (128)
T PRK05309 68 DAAKKAKEHGMKTVEVFVKGPGSGRESAIRALQAAGLEVT 107 (128)
T ss_pred HHHHHHHHcCCcEEEEEEECCCCcHHHHHHHHHHCCCEEE
Confidence 345566778999999993 32 579999999999865
No 82
>cd02876 GH18_SI-CLP Stabilin-1 interacting chitinase-like protein (SI-CLP) is a eukaryotic chitinase-like protein of unknown function that interacts with the endocytic/sorting transmembrane receptor stabilin-1 and is secreted from the lysosome. SI-CLP has a glycosyl hydrolase family 18 (GH18) domain but lacks a chitin-binding domain. The catalytic amino acids of the GH18 domain are not conserved in SI-CLP, similar to the chitolectins YKL-39, YKL-40, and YM1/2. Human SI-CLP is sorted to late endosomes and secretory lysosomes in alternatively activated macrophages.
Probab=21.06 E-value=6.4e+02 Score=25.61 Aligned_cols=87 Identities=10% Similarity=0.092 Sum_probs=43.5
Q ss_pred hHHHHHHhc--CCCEEE--E--eccCcc-cccccCCHHHHHHHHHhhccccccCCcceEEEEEec-ccccccCCCchhhh
Q 047337 66 KKILDALIG--SDIEVM--L--AIPNYM-LLEMSEDPGAAASWVYANVSSYFYTGGVNIKYVAVG-NEPFLRTYNDTYRY 137 (490)
Q Consensus 66 ~~vL~A~~~--tgi~V~--l--GV~n~~-~~~la~~~~aA~~Wv~~~V~~~~p~~~~~I~~I~VG-NEvl~~~~~~~~~~ 137 (490)
...+.+++. .++||+ + |=|... ...++++++.-.+++++ +..+..+ -.+.+|-+= =|........+...
T Consensus 54 ~~~~~~lk~~~~~lkvlp~i~~gg~~~~~f~~~~~~~~~R~~fi~s-~~~~~~~--~~~DGidiD~we~p~~~~~~~d~~ 130 (318)
T cd02876 54 KGWIEEVRKANKNIKILPRVLFEGWSYQDLQSLLNDEQEREKLIKL-LVTTAKK--NHFDGIVLEVWSQLAAYGVPDKRK 130 (318)
T ss_pred hHHHHHHHhhCCCcEEEeEEEECCCCHHHHHHHHcCHHHHHHHHHH-HHHHHHH--cCCCcEEEechhhhcccCCHHHHH
Confidence 344455554 579998 4 435432 44566666554454443 3333322 233344332 11110000011134
Q ss_pred chHHHHHHHHHHHHHcCC
Q 047337 138 ITLPALKNIQQALNDAGL 155 (490)
Q Consensus 138 ~lv~am~ni~~aL~~~gl 155 (490)
.++.-|+.+|++|++.|+
T Consensus 131 ~~~~~l~el~~~l~~~~~ 148 (318)
T cd02876 131 ELIQLVIHLGETLHSANL 148 (318)
T ss_pred HHHHHHHHHHHHHhhcCC
Confidence 577889999999988764
No 83
>PF00977 His_biosynth: Histidine biosynthesis protein; InterPro: IPR006062 Histidine is formed by several complex and distinct biochemical reactions catalysed by eight enzymes. Proteins involved in steps 4 and 6 of the histidine biosynthesis pathway are contained in one family. These enzymes are called His6 and His7 in eukaryotes and HisA and HisF in prokaryotes. HisA is a phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (5.3.1.16 from EC), involved in the fourth step of histidine biosynthesis. The bacterial HisF protein is a cyclase which catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate during the sixth step of histidine biosynthesis. The yeast His7 protein is a bifunctional protein which catalyzes an amido-transferase reaction that generates imidazole-glycerol phosphate and 5-aminoimidazol-4-carboxamide. The latter is the ribonucleotide used for purine biosynthesis. The enzyme also catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate, and is involved in the fifth and sixth steps in histidine biosynthesis.; GO: 0000105 histidine biosynthetic process; PDB: 2VEP_A 2X30_A 1VZW_A 2WJZ_A 2LLE_A 2A0N_A 1THF_D 1GPW_E 1VH7_A 1KA9_F ....
Probab=20.32 E-value=2.6e+02 Score=27.32 Aligned_cols=70 Identities=14% Similarity=0.175 Sum_probs=48.4
Q ss_pred CCCHHHHHHHHHhCCCCeEEeccCC---------hHHHHHH-hcCCCEEEEeccCcccccccCCHHHHHHHHHhhccccc
Q 047337 41 HLPADNVVQMLRENRFNKLKLFEAD---------KKILDAL-IGSDIEVMLAIPNYMLLEMSEDPGAAASWVYANVSSYF 110 (490)
Q Consensus 41 ~ps~~~vv~llk~~~i~~VRlY~~d---------~~vL~A~-~~tgi~V~lGV~n~~~~~la~~~~aA~~Wv~~~V~~~~ 110 (490)
...|-++++.+...+++.+-+-|.| .++++.+ +..++.|.+|-... +.+.++.|+...
T Consensus 28 ~~dP~~~a~~~~~~g~~~l~ivDLdaa~~g~~~n~~~i~~i~~~~~~~i~vgGGIr-------s~ed~~~ll~~G----- 95 (229)
T PF00977_consen 28 SGDPVEVAKAFNEQGADELHIVDLDAAKEGRGSNLELIKEIAKETGIPIQVGGGIR-------SIEDAERLLDAG----- 95 (229)
T ss_dssp CCCHHHHHHHHHHTT-SEEEEEEHHHHCCTHHHHHHHHHHHHHHSSSEEEEESSE--------SHHHHHHHHHTT-----
T ss_pred CcCHHHHHHHHHHcCCCEEEEEEccCcccCchhHHHHHHHHHhcCCccEEEeCccC-------cHHHHHHHHHhC-----
Confidence 3468889999988999999998876 1344444 46789999997753 345666665521
Q ss_pred cCCcceEEEEEecccccc
Q 047337 111 YTGGVNIKYVAVGNEPFL 128 (490)
Q Consensus 111 p~~~~~I~~I~VGNEvl~ 128 (490)
+..|++|.|.+.
T Consensus 96 ------a~~Vvigt~~~~ 107 (229)
T PF00977_consen 96 ------ADRVVIGTEALE 107 (229)
T ss_dssp -------SEEEESHHHHH
T ss_pred ------CCEEEeChHHhh
Confidence 236899999984
Done!