BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 047339
         (115 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3RP8|A Chain A, Crystal Structure Of Klebsiella Pneumoniae R204q Hpxo
           Complexed With Fad
          Length = 407

 Score = 29.6 bits (65), Expect = 0.48,   Method: Composition-based stats.
 Identities = 17/60 (28%), Positives = 30/60 (50%)

Query: 25  KRLGIKPLVLEKSDGLRGTGAAINFAPNAWLALDALGVSHKLASIYDPVKRLFVTNLRTG 84
           K+ GI   V E    ++  GAAI+  PN    +  LG+   + +   P++R+   + R+G
Sbjct: 43  KQSGIDCDVYEAVKEIKPVGAAISVWPNGVKCMAHLGMGDIMETFGGPLRRMAYRDFRSG 102


>pdb|3JVV|A Chain A, Crystal Structure Of P. Aeruginosa Pilt With Bound Amp-Pcp
 pdb|3JVV|B Chain B, Crystal Structure Of P. Aeruginosa Pilt With Bound Amp-Pcp
 pdb|3JVV|C Chain C, Crystal Structure Of P. Aeruginosa Pilt With Bound Amp-Pcp
 pdb|3JVU|A Chain A, Crystal Structure Of Unliganded P. Aeruginosa Pilt
 pdb|3JVU|B Chain B, Crystal Structure Of Unliganded P. Aeruginosa Pilt
 pdb|3JVU|C Chain C, Crystal Structure Of Unliganded P. Aeruginosa Pilt
          Length = 356

 Score = 27.7 bits (60), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 16/64 (25%), Positives = 30/64 (46%)

Query: 41  RGTGAAINFAPNAWLALDALGVSHKLASIYDPVKRLFVTNLRTGATQETSLAGKSENGSG 100
           RG GA     P+  L ++ LG+      + D  + L +    TG+ + T+LA   +  + 
Sbjct: 90  RGAGAVFRTIPSKVLTMEELGMGEVFKRVSDVPRGLVLVTGPTGSGKSTTLAAMLDYLNN 149

Query: 101 SQIH 104
           ++ H
Sbjct: 150 TKYH 153


>pdb|3RFU|A Chain A, Crystal Structure Of A Copper-Transporting Pib-Type Atpase
 pdb|3RFU|B Chain B, Crystal Structure Of A Copper-Transporting Pib-Type Atpase
 pdb|3RFU|C Chain C, Crystal Structure Of A Copper-Transporting Pib-Type Atpase
 pdb|3RFU|D Chain D, Crystal Structure Of A Copper-Transporting Pib-Type Atpase
          Length = 736

 Score = 26.9 bits (58), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 16/42 (38%), Positives = 25/42 (59%), Gaps = 7/42 (16%)

Query: 33  VLEKSDGLRGTGAAINFAPNAWLALDALGVSHKLASIYDPVK 74
           + EK+D LRG GA++ F     +A+D  G +  L  + DP+K
Sbjct: 522 LFEKADELRGKGASVMF-----MAVD--GKTVALLVVEDPIK 556


>pdb|2J63|A Chain A, Crystal Structure Of Ap Endonuclease Lmap From Leishmania
           Major
 pdb|2J63|B Chain B, Crystal Structure Of Ap Endonuclease Lmap From Leishmania
           Major
          Length = 467

 Score = 26.6 bits (57), Expect = 3.6,   Method: Composition-based stats.
 Identities = 16/56 (28%), Positives = 31/56 (55%), Gaps = 4/56 (7%)

Query: 52  NAWLALDALGVS---HKLASIYDPVKRLFVTNLRTGATQETSLAGKSENGSGSQIH 104
           N ++A   +G++   +++ S +DP  R ++  L T AT+  ++   +  GSGS  H
Sbjct: 294 NTYVANSGMGLTRLPYRVQS-FDPSMREYLHRLDTWATENAAVPSAAAMGSGSSPH 348


>pdb|3UNV|A Chain A, Pantoea Agglomerans Phenylalanine Aminomutase
 pdb|3UNV|B Chain B, Pantoea Agglomerans Phenylalanine Aminomutase
          Length = 547

 Score = 26.6 bits (57), Expect = 4.3,   Method: Compositional matrix adjust.
 Identities = 24/72 (33%), Positives = 34/72 (47%), Gaps = 13/72 (18%)

Query: 25  KRLGIKPLVLEKSDGLRGTGAAINFAPNAWLALDALGVSHKLASIYDPVKRLFVTNLRTG 84
           ++ GI P+ L   +GL    A IN   +A + L  L        +YD VKRLF T L   
Sbjct: 199 EKAGISPMELSFKEGL----ALIN-GTSAMVGLGVL--------LYDEVKRLFDTYLTVT 245

Query: 85  ATQETSLAGKSE 96
           +     L GK++
Sbjct: 246 SLSIEGLHGKTK 257


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.313    0.131    0.362 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,836,083
Number of Sequences: 62578
Number of extensions: 95818
Number of successful extensions: 161
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 158
Number of HSP's gapped (non-prelim): 6
length of query: 115
length of database: 14,973,337
effective HSP length: 78
effective length of query: 37
effective length of database: 10,092,253
effective search space: 373413361
effective search space used: 373413361
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 45 (21.9 bits)