Query 047339
Match_columns 115
No_of_seqs 127 out of 1415
Neff 10.1
Searched_HMMs 46136
Date Fri Mar 29 10:10:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047339.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/047339hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK08163 salicylate hydroxylas 99.7 5.6E-17 1.2E-21 112.5 11.4 91 1-92 1-92 (396)
2 COG0654 UbiH 2-polyprenyl-6-me 99.7 3E-16 6.5E-21 108.9 12.1 108 5-113 2-110 (387)
3 PRK07538 hypothetical protein; 99.7 5.8E-16 1.3E-20 108.2 11.9 80 6-86 1-80 (413)
4 PRK08244 hypothetical protein; 99.7 4.1E-16 8.9E-21 111.1 10.8 76 4-79 1-76 (493)
5 PRK07045 putative monooxygenas 99.7 7.9E-16 1.7E-20 106.6 12.0 90 1-92 1-92 (388)
6 PRK06126 hypothetical protein; 99.7 7.2E-16 1.6E-20 111.0 12.0 73 1-73 3-75 (545)
7 PRK08243 4-hydroxybenzoate 3-m 99.7 8.7E-16 1.9E-20 106.7 11.9 87 4-92 1-89 (392)
8 PRK07364 2-octaprenyl-6-methox 99.7 9.2E-16 2E-20 107.0 11.9 78 4-81 17-96 (415)
9 PRK06183 mhpA 3-(3-hydroxyphen 99.7 1.1E-15 2.3E-20 110.0 12.3 86 4-90 9-95 (538)
10 PRK06617 2-octaprenyl-6-methox 99.7 9.6E-16 2.1E-20 105.9 11.1 77 6-82 2-82 (374)
11 PRK06185 hypothetical protein; 99.7 1.2E-15 2.6E-20 106.2 11.5 80 1-80 2-82 (407)
12 TIGR02360 pbenz_hydroxyl 4-hyd 99.7 1.9E-15 4.1E-20 105.0 12.3 88 4-93 1-90 (390)
13 PRK07190 hypothetical protein; 99.7 1.2E-15 2.6E-20 108.6 11.1 80 1-80 1-80 (487)
14 PRK06475 salicylate hydroxylas 99.7 1.8E-15 3.8E-20 105.4 11.3 76 6-81 3-78 (400)
15 PRK06753 hypothetical protein; 99.7 1.7E-15 3.7E-20 104.4 11.1 79 7-86 2-80 (373)
16 PRK06847 hypothetical protein; 99.7 3.3E-15 7.1E-20 103.0 11.7 84 1-86 1-84 (375)
17 PF01494 FAD_binding_3: FAD bi 99.6 6E-16 1.3E-20 105.1 7.9 68 5-72 1-68 (356)
18 PRK06184 hypothetical protein; 99.6 1.2E-15 2.6E-20 109.0 9.4 76 5-80 3-78 (502)
19 PRK07588 hypothetical protein; 99.6 4.2E-15 9.1E-20 103.1 11.7 85 6-91 1-86 (391)
20 PRK08294 phenol 2-monooxygenas 99.6 1.7E-15 3.6E-20 110.8 9.6 77 5-81 32-109 (634)
21 PRK07494 2-octaprenyl-6-methox 99.6 1.3E-15 2.8E-20 105.5 8.6 81 1-82 3-83 (388)
22 PRK08132 FAD-dependent oxidore 99.6 7.2E-15 1.6E-19 105.9 12.7 77 4-80 22-98 (547)
23 PRK07333 2-octaprenyl-6-methox 99.6 5.2E-15 1.1E-19 102.8 11.5 77 6-82 2-82 (403)
24 PRK09126 hypothetical protein; 99.6 2.1E-15 4.5E-20 104.5 9.4 79 4-82 2-86 (392)
25 PRK05868 hypothetical protein; 99.6 3.7E-15 8E-20 103.0 10.5 80 6-86 2-81 (372)
26 PRK08773 2-octaprenyl-3-methyl 99.6 1E-14 2.3E-19 101.2 12.1 79 4-82 5-89 (392)
27 TIGR01988 Ubi-OHases Ubiquinon 99.6 8.2E-15 1.8E-19 101.1 10.8 76 7-82 1-82 (385)
28 PRK08850 2-octaprenyl-6-methox 99.6 1.5E-14 3.2E-19 100.9 11.5 77 5-81 4-86 (405)
29 PRK08013 oxidoreductase; Provi 99.6 1.6E-14 3.4E-19 100.7 11.5 78 5-82 3-87 (400)
30 PRK05714 2-octaprenyl-3-methyl 99.6 1.4E-14 3E-19 101.0 10.4 78 4-81 1-87 (405)
31 PTZ00367 squalene epoxidase; P 99.6 1.3E-14 2.7E-19 104.9 10.2 88 4-92 32-120 (567)
32 KOG2614 Kynurenine 3-monooxyge 99.6 1.4E-14 3E-19 99.4 9.7 90 5-94 2-92 (420)
33 PLN02985 squalene monooxygenas 99.6 2.7E-14 5.9E-19 102.3 11.4 88 3-92 41-129 (514)
34 TIGR01989 COQ6 Ubiquinone bios 99.6 2.9E-14 6.2E-19 100.4 11.0 76 6-81 1-93 (437)
35 TIGR01984 UbiH 2-polyprenyl-6- 99.6 1.6E-14 3.4E-19 99.8 8.8 74 7-80 1-79 (382)
36 PRK08020 ubiF 2-octaprenyl-3-m 99.6 5E-14 1.1E-18 97.7 11.4 84 1-84 1-91 (391)
37 PRK08849 2-octaprenyl-3-methyl 99.6 4.1E-14 8.8E-19 98.1 10.1 76 5-80 3-85 (384)
38 PRK05732 2-octaprenyl-6-methox 99.6 3.1E-14 6.7E-19 98.7 9.1 77 4-80 2-86 (395)
39 PRK07236 hypothetical protein; 99.6 4.1E-14 8.9E-19 98.1 9.6 81 4-86 5-86 (386)
40 PRK07608 ubiquinone biosynthes 99.6 4.9E-14 1.1E-18 97.5 9.7 80 3-82 3-88 (388)
41 PRK06996 hypothetical protein; 99.5 2.6E-13 5.7E-18 94.5 11.5 77 1-80 7-89 (398)
42 PRK06834 hypothetical protein; 99.5 2.6E-13 5.6E-18 96.8 11.6 68 5-72 3-71 (488)
43 KOG1298 Squalene monooxygenase 99.5 2E-13 4.4E-18 93.4 8.5 107 2-110 42-151 (509)
44 TIGR03219 salicylate_mono sali 99.5 1.3E-13 2.9E-18 96.4 7.8 64 7-70 2-66 (414)
45 COG1635 THI4 Ribulose 1,5-bisp 99.4 4.2E-13 9.1E-18 85.8 6.0 59 5-63 30-95 (262)
46 PLN00093 geranylgeranyl diphos 99.4 2.1E-12 4.6E-17 91.4 9.6 74 1-80 35-108 (450)
47 PF01946 Thi4: Thi4 family; PD 99.4 7.5E-13 1.6E-17 84.6 5.3 60 4-63 16-82 (230)
48 PLN02927 antheraxanthin epoxid 99.4 8.3E-12 1.8E-16 91.5 10.7 69 3-71 79-153 (668)
49 PRK11445 putative oxidoreducta 99.3 2.2E-12 4.7E-17 88.7 6.2 57 6-63 2-62 (351)
50 COG0644 FixC Dehydrogenases (f 99.3 2.9E-12 6.2E-17 89.4 6.2 55 3-57 1-56 (396)
51 TIGR02023 BchP-ChlP geranylger 99.3 3.4E-11 7.3E-16 83.8 9.9 69 6-80 1-69 (388)
52 PRK04176 ribulose-1,5-biphosph 99.3 8.1E-12 1.8E-16 82.7 6.1 61 3-63 23-90 (257)
53 PRK10157 putative oxidoreducta 99.3 1.1E-11 2.3E-16 87.4 6.7 42 1-42 1-42 (428)
54 TIGR02032 GG-red-SF geranylger 99.3 7.4E-12 1.6E-16 83.4 5.4 56 6-61 1-56 (295)
55 PRK10015 oxidoreductase; Provi 99.3 1.1E-11 2.3E-16 87.4 6.5 42 1-42 1-42 (429)
56 TIGR00292 thiazole biosynthesi 99.2 2.8E-11 6E-16 80.0 6.3 60 4-63 20-86 (254)
57 PF13450 NAD_binding_8: NAD(P) 99.2 3.1E-11 6.7E-16 64.5 5.3 38 10-47 1-38 (68)
58 PRK08255 salicylyl-CoA 5-hydro 99.2 6.9E-11 1.5E-15 88.4 8.4 73 7-79 2-78 (765)
59 TIGR02028 ChlP geranylgeranyl 99.2 1.5E-10 3.3E-15 80.9 9.4 68 6-79 1-68 (398)
60 COG2081 Predicted flavoprotein 99.2 1.2E-10 2.6E-15 80.1 6.6 58 4-61 2-66 (408)
61 TIGR00562 proto_IX_ox protopor 99.1 2.4E-10 5.2E-15 80.9 7.9 61 6-66 3-82 (462)
62 COG1233 Phytoene dehydrogenase 99.1 1.1E-10 2.5E-15 83.4 5.9 42 4-45 2-43 (487)
63 PRK11883 protoporphyrinogen ox 99.1 1.9E-10 4E-15 81.1 6.4 60 6-65 1-77 (451)
64 PRK07233 hypothetical protein; 99.1 2.3E-10 5.1E-15 80.1 6.3 59 7-65 1-74 (434)
65 PF04820 Trp_halogenase: Trypt 99.1 2.8E-10 6E-15 80.8 6.1 85 7-92 1-92 (454)
66 PRK05249 soluble pyridine nucl 99.1 2.5E-10 5.4E-15 81.0 5.7 46 1-46 1-46 (461)
67 COG1232 HemY Protoporphyrinoge 99.1 1.3E-09 2.7E-14 76.9 9.0 62 7-68 2-80 (444)
68 PRK07208 hypothetical protein; 99.1 3.3E-10 7.1E-15 80.7 6.2 42 3-44 2-43 (479)
69 PF03486 HI0933_like: HI0933-l 99.1 2.1E-10 4.5E-15 80.4 4.9 36 6-41 1-36 (409)
70 TIGR02731 phytoene_desat phyto 99.1 5.8E-10 1.2E-14 79.0 6.9 60 7-66 1-76 (453)
71 PLN02661 Putative thiazole syn 99.0 9.8E-10 2.1E-14 75.4 6.5 61 3-63 90-158 (357)
72 PRK13369 glycerol-3-phosphate 99.0 8.1E-10 1.8E-14 79.3 6.1 57 3-59 4-61 (502)
73 COG3349 Uncharacterized conser 99.0 6.3E-10 1.4E-14 78.7 5.4 59 6-64 1-75 (485)
74 PRK05335 tRNA (uracil-5-)-meth 99.0 1.2E-09 2.7E-14 76.6 6.4 64 5-68 2-74 (436)
75 PRK12416 protoporphyrinogen ox 99.0 9.8E-10 2.1E-14 78.0 6.0 61 6-66 2-83 (463)
76 PRK07843 3-ketosteroid-delta-1 99.0 2.3E-09 4.9E-14 77.9 7.8 65 1-65 3-69 (557)
77 PLN02576 protoporphyrinogen ox 99.0 1.4E-09 2.9E-14 77.9 6.2 42 4-45 11-53 (496)
78 PRK11259 solA N-methyltryptoph 99.0 8.8E-10 1.9E-14 76.1 4.9 36 4-39 2-37 (376)
79 PRK12266 glpD glycerol-3-phosp 99.0 1.8E-09 3.9E-14 77.7 6.7 56 4-59 5-61 (508)
80 KOG0029 Amine oxidase [Seconda 99.0 1.4E-09 3.1E-14 77.8 6.0 41 3-43 13-53 (501)
81 PLN02463 lycopene beta cyclase 99.0 1.5E-09 3.3E-14 76.9 6.1 61 4-68 27-87 (447)
82 PRK06115 dihydrolipoamide dehy 99.0 1E-09 2.2E-14 78.1 5.2 43 5-47 3-45 (466)
83 TIGR02733 desat_CrtD C-3',4' d 99.0 1.4E-09 3E-14 77.8 5.7 37 6-42 2-38 (492)
84 TIGR02732 zeta_caro_desat caro 99.0 2.1E-09 4.6E-14 76.7 6.4 61 7-67 1-77 (474)
85 PRK14694 putative mercuric red 98.9 1.7E-09 3.7E-14 77.0 5.8 38 1-38 2-39 (468)
86 PLN02612 phytoene desaturase 98.9 3.4E-09 7.5E-14 77.1 7.4 63 4-66 92-170 (567)
87 PRK06370 mercuric reductase; V 98.9 2E-09 4.3E-14 76.6 5.8 37 2-38 2-38 (463)
88 TIGR02730 carot_isom carotene 98.9 2.2E-09 4.8E-14 76.9 6.0 40 6-45 1-40 (493)
89 PLN02172 flavin-containing mon 98.9 2E-09 4.3E-14 76.6 5.6 40 4-43 9-48 (461)
90 TIGR01424 gluta_reduc_2 glutat 98.9 1.8E-09 4E-14 76.4 5.3 40 5-45 2-41 (446)
91 PLN02487 zeta-carotene desatur 98.9 3.3E-09 7.1E-14 77.1 6.7 63 5-67 75-153 (569)
92 PRK06467 dihydrolipoamide dehy 98.9 2.2E-09 4.8E-14 76.5 5.7 45 3-47 2-46 (471)
93 PRK08010 pyridine nucleotide-d 98.9 2.3E-09 4.9E-14 75.8 5.7 42 5-46 3-45 (441)
94 PRK06116 glutathione reductase 98.9 1.6E-09 3.4E-14 76.8 4.9 40 4-44 3-42 (450)
95 PLN02268 probable polyamine ox 98.9 2.3E-09 5E-14 75.5 5.6 39 6-44 1-39 (435)
96 PRK11728 hydroxyglutarate oxid 98.9 2E-09 4.3E-14 75.0 5.2 36 5-40 2-39 (393)
97 PRK11101 glpA sn-glycerol-3-ph 98.9 2.7E-09 5.9E-14 77.3 5.6 39 2-40 3-41 (546)
98 PF12831 FAD_oxidored: FAD dep 98.9 2.3E-09 5E-14 75.6 5.0 36 7-42 1-36 (428)
99 TIGR02734 crtI_fam phytoene de 98.9 2.7E-09 5.8E-14 76.5 5.3 37 8-44 1-37 (502)
100 PLN02464 glycerol-3-phosphate 98.9 4.2E-09 9.1E-14 77.5 6.3 56 3-58 69-125 (627)
101 PRK07251 pyridine nucleotide-d 98.9 3.1E-09 6.8E-14 75.1 5.5 35 5-39 3-37 (438)
102 PRK13748 putative mercuric red 98.9 2.8E-09 6.1E-14 77.3 5.3 39 4-43 97-135 (561)
103 PF01266 DAO: FAD dependent ox 98.9 3.4E-09 7.3E-14 72.1 5.4 34 7-40 1-34 (358)
104 TIGR01350 lipoamide_DH dihydro 98.9 3.7E-09 8E-14 75.0 5.7 43 5-48 1-43 (461)
105 PRK06416 dihydrolipoamide dehy 98.9 4.2E-09 9.1E-14 74.8 5.8 40 4-44 3-42 (462)
106 PLN02568 polyamine oxidase 98.9 5.7E-09 1.2E-13 75.6 6.6 43 1-43 1-48 (539)
107 TIGR01421 gluta_reduc_1 glutat 98.9 3.7E-09 8.1E-14 75.0 5.5 39 5-44 2-40 (450)
108 COG0665 DadA Glycine/D-amino a 98.9 4.2E-09 9.1E-14 72.9 5.4 38 3-40 2-39 (387)
109 PRK05976 dihydrolipoamide dehy 98.9 4.8E-09 1E-13 74.8 5.7 42 4-46 3-44 (472)
110 PRK06452 sdhA succinate dehydr 98.9 5.2E-09 1.1E-13 76.2 5.8 40 1-40 1-40 (566)
111 COG0492 TrxB Thioredoxin reduc 98.9 4.2E-09 9E-14 71.3 4.9 34 4-37 2-36 (305)
112 TIGR03143 AhpF_homolog putativ 98.9 5.2E-09 1.1E-13 76.0 5.7 35 4-38 3-37 (555)
113 KOG1399 Flavin-containing mono 98.9 4.7E-09 1E-13 74.3 5.4 40 3-42 4-43 (448)
114 PRK06069 sdhA succinate dehydr 98.9 4.8E-09 1E-13 76.5 5.6 40 1-40 1-43 (577)
115 COG0578 GlpA Glycerol-3-phosph 98.9 7.1E-09 1.5E-13 74.4 6.2 62 2-63 9-71 (532)
116 PRK06292 dihydrolipoamide dehy 98.9 5.5E-09 1.2E-13 74.2 5.5 39 4-43 2-40 (460)
117 COG2072 TrkA Predicted flavopr 98.8 6.8E-09 1.5E-13 73.6 5.8 41 3-43 6-47 (443)
118 PF00070 Pyr_redox: Pyridine n 98.8 6.6E-09 1.4E-13 57.1 4.6 55 7-62 1-55 (80)
119 PRK12842 putative succinate de 98.8 1.1E-08 2.3E-13 74.7 6.8 41 2-42 6-46 (574)
120 TIGR01377 soxA_mon sarcosine o 98.8 4.7E-09 1E-13 72.6 4.8 34 6-39 1-34 (380)
121 TIGR01790 carotene-cycl lycope 98.8 5.7E-09 1.2E-13 72.5 5.2 34 7-40 1-34 (388)
122 PRK07803 sdhA succinate dehydr 98.8 7E-09 1.5E-13 76.3 5.6 40 1-40 4-43 (626)
123 TIGR02053 MerA mercuric reduct 98.8 8.1E-09 1.8E-13 73.4 5.8 38 6-44 1-38 (463)
124 PTZ00058 glutathione reductase 98.8 7.2E-09 1.6E-13 75.3 5.6 40 3-43 46-85 (561)
125 PLN02697 lycopene epsilon cycl 98.8 1.6E-08 3.4E-13 73.1 7.1 58 4-67 107-164 (529)
126 KOG2415 Electron transfer flav 98.8 2.3E-08 4.9E-13 69.8 7.5 108 4-114 75-190 (621)
127 PRK07818 dihydrolipoamide dehy 98.8 9.4E-09 2E-13 73.2 5.9 40 5-45 4-43 (466)
128 TIGR00031 UDP-GALP_mutase UDP- 98.8 9.5E-09 2.1E-13 71.4 5.7 38 6-43 2-39 (377)
129 PRK07057 sdhA succinate dehydr 98.8 9E-09 2E-13 75.3 5.8 39 1-39 8-46 (591)
130 COG3380 Predicted NAD/FAD-depe 98.8 8.3E-09 1.8E-13 68.2 5.0 37 6-42 2-38 (331)
131 TIGR03315 Se_ygfK putative sel 98.8 8.1E-09 1.8E-13 78.9 5.6 39 5-43 537-575 (1012)
132 PF13738 Pyr_redox_3: Pyridine 98.8 8.4E-09 1.8E-13 65.6 4.8 34 9-42 1-35 (203)
133 PRK12779 putative bifunctional 98.8 7.7E-09 1.7E-13 79.0 5.3 38 5-42 306-343 (944)
134 PTZ00363 rab-GDP dissociation 98.8 7.4E-09 1.6E-13 73.4 4.8 44 4-47 3-46 (443)
135 TIGR01292 TRX_reduct thioredox 98.8 9.1E-09 2E-13 68.8 5.0 33 6-38 1-33 (300)
136 TIGR03364 HpnW_proposed FAD de 98.8 1.2E-08 2.5E-13 70.4 5.6 34 6-39 1-34 (365)
137 PRK12409 D-amino acid dehydrog 98.8 1.1E-08 2.4E-13 71.5 5.6 34 6-39 2-35 (410)
138 PRK08626 fumarate reductase fl 98.8 1E-08 2.3E-13 75.8 5.5 40 1-40 1-40 (657)
139 PRK06481 fumarate reductase fl 98.8 1.2E-08 2.7E-13 73.4 5.8 39 4-42 60-98 (506)
140 PRK07121 hypothetical protein; 98.8 1.2E-08 2.7E-13 73.1 5.7 39 4-42 19-57 (492)
141 PRK14727 putative mercuric red 98.8 1.1E-08 2.4E-13 73.1 5.2 43 3-45 14-56 (479)
142 PF00890 FAD_binding_2: FAD bi 98.8 9.6E-09 2.1E-13 72.0 4.7 34 7-40 1-34 (417)
143 PRK08274 tricarballylate dehyd 98.8 1.1E-08 2.5E-13 72.7 5.0 36 4-39 3-38 (466)
144 COG1231 Monoamine oxidase [Ami 98.8 2.5E-08 5.5E-13 69.8 6.4 42 4-45 6-47 (450)
145 PRK06327 dihydrolipoamide dehy 98.8 1.6E-08 3.4E-13 72.2 5.5 33 4-36 3-35 (475)
146 PRK12831 putative oxidoreducta 98.8 1.7E-08 3.7E-13 72.0 5.6 39 4-42 139-177 (464)
147 PLN02852 ferredoxin-NADP+ redu 98.8 1.8E-08 3.9E-13 72.2 5.6 40 4-43 25-66 (491)
148 PRK12834 putative FAD-binding 98.8 1.8E-08 3.8E-13 73.2 5.7 36 3-38 2-37 (549)
149 PRK05192 tRNA uridine 5-carbox 98.8 1.3E-08 2.9E-13 74.2 5.0 36 3-38 2-37 (618)
150 PRK01747 mnmC bifunctional tRN 98.8 1.5E-08 3.2E-13 75.0 5.3 34 6-39 261-294 (662)
151 PTZ00052 thioredoxin reductase 98.8 1.7E-08 3.8E-13 72.5 5.5 34 4-37 4-37 (499)
152 TIGR01373 soxB sarcosine oxida 98.8 2E-08 4.4E-13 70.2 5.6 37 3-39 28-66 (407)
153 TIGR03329 Phn_aa_oxid putative 98.8 1.6E-08 3.6E-13 71.9 5.3 36 4-39 23-60 (460)
154 PRK12844 3-ketosteroid-delta-1 98.7 4.8E-08 1.1E-12 71.1 7.6 39 4-42 5-43 (557)
155 PRK10262 thioredoxin reductase 98.7 2E-08 4.3E-13 68.3 5.3 35 3-37 4-38 (321)
156 COG1249 Lpd Pyruvate/2-oxoglut 98.7 2.6E-08 5.7E-13 70.7 6.0 50 3-52 2-51 (454)
157 PF05834 Lycopene_cycl: Lycope 98.7 1.3E-08 2.9E-13 70.7 4.5 34 7-40 1-36 (374)
158 COG2907 Predicted NAD/FAD-bind 98.7 1.7E-08 3.7E-13 68.9 4.7 61 4-65 7-87 (447)
159 PRK09078 sdhA succinate dehydr 98.7 2.1E-08 4.5E-13 73.5 5.4 37 4-40 11-47 (598)
160 PRK02106 choline dehydrogenase 98.7 1.9E-08 4.2E-13 73.1 5.3 39 1-39 1-40 (560)
161 PRK00711 D-amino acid dehydrog 98.7 2.2E-08 4.8E-13 70.1 5.1 33 7-39 2-34 (416)
162 PLN02507 glutathione reductase 98.7 2.8E-08 6.1E-13 71.4 5.5 32 5-36 25-56 (499)
163 PRK07804 L-aspartate oxidase; 98.7 3E-08 6.5E-13 71.9 5.6 38 3-40 14-51 (541)
164 TIGR01813 flavo_cyto_c flavocy 98.7 2.9E-08 6.3E-13 70.2 5.4 35 7-41 1-36 (439)
165 PTZ00139 Succinate dehydrogena 98.7 3.1E-08 6.8E-13 72.8 5.6 37 4-40 28-64 (617)
166 PRK05257 malate:quinone oxidor 98.7 2.6E-08 5.5E-13 71.6 5.0 38 2-39 2-41 (494)
167 TIGR01316 gltA glutamate synth 98.7 4.2E-08 9E-13 69.7 5.8 38 4-41 132-169 (449)
168 PF07992 Pyr_redox_2: Pyridine 98.7 3.2E-08 6.9E-13 62.7 4.8 33 7-39 1-33 (201)
169 PRK09853 putative selenate red 98.7 3.5E-08 7.7E-13 75.4 5.6 39 5-43 539-577 (1019)
170 PRK12769 putative oxidoreducta 98.7 3.9E-08 8.5E-13 72.7 5.7 38 5-42 327-364 (654)
171 PRK12837 3-ketosteroid-delta-1 98.7 3.8E-08 8.2E-13 71.0 5.4 37 4-41 6-42 (513)
172 PF00732 GMC_oxred_N: GMC oxid 98.7 2.3E-08 4.9E-13 67.2 4.0 35 6-40 1-36 (296)
173 COG0562 Glf UDP-galactopyranos 98.7 4.1E-08 8.8E-13 66.3 5.1 38 6-43 2-39 (374)
174 PTZ00383 malate:quinone oxidor 98.7 3.3E-08 7.2E-13 71.0 5.0 38 2-39 42-81 (497)
175 PRK12845 3-ketosteroid-delta-1 98.7 6.7E-08 1.5E-12 70.4 6.5 39 3-42 14-52 (564)
176 PRK08641 sdhA succinate dehydr 98.7 4.5E-08 9.8E-13 71.7 5.6 36 5-40 3-38 (589)
177 PRK07573 sdhA succinate dehydr 98.7 4.9E-08 1.1E-12 72.1 5.6 37 4-40 34-70 (640)
178 TIGR01372 soxA sarcosine oxida 98.7 4.5E-08 9.8E-13 75.3 5.6 38 5-42 163-200 (985)
179 PF00743 FMO-like: Flavin-bind 98.7 3.6E-08 7.7E-13 71.4 4.8 40 5-44 1-40 (531)
180 PRK12778 putative bifunctional 98.7 5.1E-08 1.1E-12 73.2 5.6 38 4-41 430-467 (752)
181 PRK13977 myosin-cross-reactive 98.7 6.3E-08 1.4E-12 70.2 5.9 39 5-43 22-64 (576)
182 TIGR01320 mal_quin_oxido malat 98.7 3.4E-08 7.3E-13 70.8 4.5 34 6-39 1-36 (483)
183 TIGR01789 lycopene_cycl lycope 98.7 4.8E-08 1E-12 67.9 5.1 34 7-40 1-36 (370)
184 PRK12775 putative trifunctiona 98.7 4.1E-08 8.9E-13 75.6 5.1 38 5-42 430-467 (1006)
185 PRK06854 adenylylsulfate reduc 98.7 4.5E-08 9.9E-13 71.9 5.2 37 4-40 10-48 (608)
186 PLN00128 Succinate dehydrogena 98.7 5E-08 1.1E-12 72.0 5.4 37 4-40 49-85 (635)
187 TIGR00137 gid_trmFO tRNA:m(5)U 98.7 4.6E-08 9.9E-13 69.0 4.9 35 6-40 1-35 (433)
188 COG1148 HdrA Heterodisulfide r 98.7 4.7E-08 1E-12 69.2 4.9 40 4-43 123-162 (622)
189 PRK06175 L-aspartate oxidase; 98.6 5.1E-08 1.1E-12 69.0 5.2 37 4-41 3-39 (433)
190 PTZ00188 adrenodoxin reductase 98.6 6.1E-08 1.3E-12 69.3 5.5 41 5-45 39-80 (506)
191 TIGR01423 trypano_reduc trypan 98.6 5.1E-08 1.1E-12 69.9 5.1 34 4-37 2-36 (486)
192 COG0579 Predicted dehydrogenas 98.6 4.9E-08 1.1E-12 68.7 4.9 38 4-41 2-41 (429)
193 PRK12835 3-ketosteroid-delta-1 98.6 5.9E-08 1.3E-12 71.0 5.5 39 4-42 10-48 (584)
194 PLN02546 glutathione reductase 98.6 5.5E-08 1.2E-12 70.8 5.2 33 4-36 78-110 (558)
195 PRK12810 gltD glutamate syntha 98.6 7.8E-08 1.7E-12 68.7 5.8 38 5-42 143-180 (471)
196 KOG3855 Monooxygenase involved 98.6 2.8E-07 6E-12 64.2 8.2 79 4-82 35-127 (481)
197 PRK06567 putative bifunctional 98.6 5.4E-08 1.2E-12 74.1 5.1 35 4-38 382-416 (1028)
198 PRK06134 putative FAD-binding 98.6 9.8E-08 2.1E-12 69.8 6.3 40 3-42 10-49 (581)
199 PRK11749 dihydropyrimidine deh 98.6 8E-08 1.7E-12 68.4 5.6 38 4-41 139-176 (457)
200 PTZ00153 lipoamide dehydrogena 98.6 9E-08 2E-12 70.8 5.9 49 4-52 115-164 (659)
201 PRK08275 putative oxidoreducta 98.6 7.4E-08 1.6E-12 70.1 5.4 36 4-39 8-45 (554)
202 TIGR01812 sdhA_frdA_Gneg succi 98.6 7.3E-08 1.6E-12 70.2 5.3 34 7-40 1-34 (566)
203 PRK15317 alkyl hydroperoxide r 98.6 7.2E-08 1.6E-12 69.6 5.2 34 4-37 210-243 (517)
204 PLN02529 lysine-specific histo 98.6 9.6E-08 2.1E-12 71.3 5.9 40 4-43 159-198 (738)
205 PRK05329 anaerobic glycerol-3- 98.6 7.8E-08 1.7E-12 67.8 5.2 35 4-38 1-35 (422)
206 TIGR02462 pyranose_ox pyranose 98.6 1.4E-07 3E-12 68.4 6.4 38 6-43 1-38 (544)
207 PLN02676 polyamine oxidase 98.6 1.2E-07 2.6E-12 68.0 6.0 38 5-42 26-64 (487)
208 PRK09231 fumarate reductase fl 98.6 8.3E-08 1.8E-12 70.2 5.3 39 2-40 1-41 (582)
209 PRK08401 L-aspartate oxidase; 98.6 7E-08 1.5E-12 68.9 4.8 34 6-39 2-35 (466)
210 PLN02328 lysine-specific histo 98.6 7.2E-08 1.6E-12 72.5 4.9 40 4-43 237-276 (808)
211 PRK08205 sdhA succinate dehydr 98.6 1E-07 2.2E-12 69.8 5.6 39 1-40 1-39 (583)
212 PRK08958 sdhA succinate dehydr 98.6 1.2E-07 2.6E-12 69.5 5.8 37 4-40 6-42 (588)
213 TIGR03140 AhpF alkyl hydropero 98.6 9.3E-08 2E-12 69.0 5.2 33 4-36 211-243 (515)
214 KOG1276 Protoporphyrinogen oxi 98.6 1.6E-07 3.4E-12 65.6 6.0 66 4-69 10-96 (491)
215 PRK12814 putative NADPH-depend 98.6 1.2E-07 2.6E-12 70.2 5.7 38 5-42 193-230 (652)
216 PTZ00306 NADH-dependent fumara 98.6 1.1E-07 2.4E-12 74.3 5.7 40 3-42 407-446 (1167)
217 PF01134 GIDA: Glucose inhibit 98.6 1E-07 2.2E-12 66.4 5.0 35 7-41 1-36 (392)
218 PLN02815 L-aspartate oxidase 98.6 1.1E-07 2.3E-12 69.7 5.4 37 4-41 28-64 (594)
219 PRK13339 malate:quinone oxidor 98.6 1E-07 2.2E-12 68.5 5.1 37 4-40 5-43 (497)
220 TIGR00551 nadB L-aspartate oxi 98.6 1.4E-07 3E-12 67.7 5.4 35 5-40 2-36 (488)
221 PRK07395 L-aspartate oxidase; 98.6 1.3E-07 2.7E-12 68.9 5.2 38 3-41 7-44 (553)
222 PRK05945 sdhA succinate dehydr 98.6 1.1E-07 2.4E-12 69.4 5.0 37 4-40 2-40 (575)
223 PRK09077 L-aspartate oxidase; 98.6 1.5E-07 3.3E-12 68.2 5.6 37 3-40 6-42 (536)
224 TIGR01438 TGR thioredoxin and 98.6 1.5E-07 3.2E-12 67.6 5.4 33 5-37 2-34 (484)
225 PRK12839 hypothetical protein; 98.6 1.7E-07 3.7E-12 68.5 5.8 40 3-42 6-45 (572)
226 COG1053 SdhA Succinate dehydro 98.5 1.8E-07 3.8E-12 68.1 5.5 41 1-41 2-42 (562)
227 TIGR01318 gltD_gamma_fam gluta 98.5 2E-07 4.3E-12 66.6 5.7 38 5-42 141-178 (467)
228 PRK06263 sdhA succinate dehydr 98.5 1.3E-07 2.9E-12 68.6 4.8 35 4-39 6-40 (543)
229 PRK12809 putative oxidoreducta 98.5 2.3E-07 4.9E-12 68.6 5.8 37 5-41 310-346 (639)
230 TIGR01176 fum_red_Fp fumarate 98.5 1.9E-07 4.2E-12 68.3 5.2 38 4-41 2-41 (580)
231 TIGR00275 flavoprotein, HI0933 98.5 1.1E-07 2.3E-12 66.7 3.5 33 9-41 1-33 (400)
232 PRK12770 putative glutamate sy 98.5 3.4E-07 7.4E-12 63.1 5.8 39 4-42 17-55 (352)
233 PRK06912 acoL dihydrolipoamide 98.5 2.7E-07 5.8E-12 65.8 5.3 33 7-39 2-34 (458)
234 PRK08071 L-aspartate oxidase; 98.5 3.2E-07 6.9E-12 66.3 5.0 36 5-41 3-38 (510)
235 KOG0685 Flavin-containing amin 98.4 3.1E-07 6.7E-12 64.8 4.6 45 5-49 21-66 (498)
236 COG3075 GlpB Anaerobic glycero 98.4 3.5E-07 7.6E-12 62.2 4.7 36 4-39 1-36 (421)
237 PRK12843 putative FAD-binding 98.4 4.6E-07 1E-11 66.3 5.7 39 4-42 15-53 (578)
238 PRK12771 putative glutamate sy 98.4 4.3E-07 9.3E-12 66.3 5.3 38 5-42 137-174 (564)
239 PRK13800 putative oxidoreducta 98.4 3.4E-07 7.4E-12 70.0 4.9 36 4-39 12-47 (897)
240 TIGR02061 aprA adenosine phosp 98.4 4.5E-07 9.7E-12 66.8 5.2 33 7-39 1-37 (614)
241 TIGR01317 GOGAT_sm_gam glutama 98.4 5.9E-07 1.3E-11 64.5 5.5 37 5-41 143-179 (485)
242 KOG1335 Dihydrolipoamide dehyd 98.4 4.5E-07 9.7E-12 62.8 4.6 48 4-51 38-85 (506)
243 PRK07512 L-aspartate oxidase; 98.4 4.4E-07 9.6E-12 65.6 4.5 37 1-39 5-41 (513)
244 KOG2820 FAD-dependent oxidored 98.4 5.4E-07 1.2E-11 61.4 4.4 38 4-41 6-43 (399)
245 TIGR03378 glycerol3P_GlpB glyc 98.4 7.1E-07 1.5E-11 62.8 5.1 34 6-39 1-34 (419)
246 PLN03000 amine oxidase 98.4 8.5E-07 1.8E-11 67.2 5.8 39 5-43 184-222 (881)
247 COG2303 BetA Choline dehydroge 98.4 4.7E-07 1E-11 65.8 4.3 37 3-39 5-41 (542)
248 PRK07845 flavoprotein disulfid 98.4 8.9E-07 1.9E-11 63.3 5.4 33 6-38 2-34 (466)
249 PLN02976 amine oxidase 98.3 1.2E-06 2.7E-11 69.1 5.8 40 4-43 692-731 (1713)
250 PRK13984 putative oxidoreducta 98.3 1.4E-06 3.1E-11 64.0 5.6 37 5-41 283-319 (604)
251 TIGR01811 sdhA_Bsu succinate d 98.3 8E-07 1.7E-11 65.4 4.1 31 8-38 1-31 (603)
252 COG0493 GltD NADPH-dependent g 98.3 9.4E-07 2E-11 63.0 4.3 58 6-63 124-189 (457)
253 TIGR01810 betA choline dehydro 98.3 7.8E-07 1.7E-11 64.5 4.0 33 7-39 1-34 (532)
254 COG3573 Predicted oxidoreducta 98.3 2.5E-06 5.5E-11 58.6 5.7 38 2-39 2-39 (552)
255 PLN02785 Protein HOTHEAD 98.3 1.8E-06 3.8E-11 63.4 5.0 35 4-39 54-88 (587)
256 KOG0042 Glycerol-3-phosphate d 98.2 6.1E-07 1.3E-11 64.4 2.2 58 2-59 64-122 (680)
257 TIGR00136 gidA glucose-inhibit 98.2 2.5E-06 5.4E-11 62.6 5.2 34 6-39 1-34 (617)
258 PRK09754 phenylpropionate diox 98.2 3.6E-06 7.9E-11 58.9 5.4 36 5-40 3-40 (396)
259 PRK07846 mycothione reductase; 98.2 2.8E-06 6.1E-11 60.6 4.7 40 5-47 1-40 (451)
260 PRK09897 hypothetical protein; 98.2 3.9E-06 8.4E-11 61.0 5.2 36 6-41 2-39 (534)
261 PRK09564 coenzyme A disulfide 98.2 3.5E-06 7.6E-11 59.7 4.6 34 7-40 2-37 (444)
262 PRK13512 coenzyme A disulfide 98.1 4.5E-06 9.7E-11 59.3 5.1 35 6-40 2-38 (438)
263 TIGR03452 mycothione_red mycot 98.1 4.8E-06 1E-10 59.4 5.1 40 5-47 2-41 (452)
264 KOG1800 Ferredoxin/adrenodoxin 98.1 5.7E-06 1.2E-10 57.4 5.0 38 5-42 20-59 (468)
265 COG0446 HcaD Uncharacterized N 98.1 5.5E-06 1.2E-10 57.6 4.5 57 6-62 137-193 (415)
266 COG1206 Gid NAD(FAD)-utilizing 98.1 4.9E-06 1.1E-10 56.8 3.7 36 4-39 2-37 (439)
267 KOG0399 Glutamate synthase [Am 98.0 5.9E-06 1.3E-10 64.1 4.2 37 6-42 1786-1822(2142)
268 PRK04965 NADH:flavorubredoxin 98.0 1.2E-05 2.6E-10 55.9 5.3 35 5-39 2-38 (377)
269 TIGR02485 CobZ_N-term precorri 98.0 5.4E-06 1.2E-10 58.7 3.3 30 10-39 1-30 (432)
270 PTZ00318 NADH dehydrogenase-li 98.0 1E-05 2.2E-10 57.2 4.7 37 4-40 9-45 (424)
271 KOG2853 Possible oxidoreductas 98.0 1.1E-05 2.5E-10 55.5 4.5 36 5-40 86-125 (509)
272 PRK06249 2-dehydropantoate 2-r 98.0 1.5E-05 3.3E-10 54.3 5.2 38 1-38 1-38 (313)
273 KOG4716 Thioredoxin reductase 98.0 1.3E-05 2.9E-10 55.1 4.6 41 3-43 17-58 (503)
274 KOG2960 Protein involved in th 97.9 2.7E-06 5.9E-11 55.0 0.8 59 5-63 76-143 (328)
275 PRK09754 phenylpropionate diox 97.9 1.8E-05 3.8E-10 55.5 4.7 35 6-40 145-179 (396)
276 COG0029 NadB Aspartate oxidase 97.9 1.9E-05 4.1E-10 56.3 4.4 33 7-40 9-41 (518)
277 PRK07251 pyridine nucleotide-d 97.9 3.2E-05 7E-10 54.9 5.5 58 5-63 157-214 (438)
278 PRK04965 NADH:flavorubredoxin 97.9 2.5E-05 5.4E-10 54.4 4.9 35 6-40 142-176 (377)
279 PF01210 NAD_Gly3P_dh_N: NAD-d 97.9 2.4E-05 5.2E-10 48.3 4.2 32 7-38 1-32 (157)
280 COG0569 TrkA K+ transport syst 97.9 4E-05 8.7E-10 50.0 5.3 57 7-63 2-65 (225)
281 KOG1238 Glucose dehydrogenase/ 97.9 2E-05 4.3E-10 57.7 4.2 37 4-40 56-93 (623)
282 PRK05976 dihydrolipoamide dehy 97.9 3.6E-05 7.8E-10 55.2 5.4 58 5-63 180-237 (472)
283 KOG2665 Predicted FAD-dependen 97.9 1.3E-05 2.9E-10 54.6 2.9 38 3-40 46-85 (453)
284 TIGR01421 gluta_reduc_1 glutat 97.8 4E-05 8.7E-10 54.7 5.4 58 5-63 166-223 (450)
285 TIGR03385 CoA_CoA_reduc CoA-di 97.8 4.1E-05 8.8E-10 54.1 5.2 35 6-40 138-172 (427)
286 KOG0404 Thioredoxin reductase 97.8 2.6E-05 5.7E-10 50.8 3.7 33 4-36 7-39 (322)
287 PRK06912 acoL dihydrolipoamide 97.8 5.6E-05 1.2E-09 54.0 5.7 58 5-63 170-227 (458)
288 COG3634 AhpF Alkyl hydroperoxi 97.8 1.2E-05 2.5E-10 55.5 2.1 32 4-35 210-241 (520)
289 PF13454 NAD_binding_9: FAD-NA 97.8 3.5E-05 7.5E-10 47.5 3.9 31 9-39 1-36 (156)
290 PRK06115 dihydrolipoamide dehy 97.8 6.3E-05 1.4E-09 53.9 5.7 59 4-63 173-231 (466)
291 COG1249 Lpd Pyruvate/2-oxoglut 97.8 7.3E-05 1.6E-09 53.5 5.7 39 4-42 172-210 (454)
292 PF00996 GDI: GDP dissociation 97.8 6.4E-05 1.4E-09 53.5 5.3 45 4-48 3-47 (438)
293 COG1252 Ndh NADH dehydrogenase 97.8 6.1E-05 1.3E-09 53.0 5.0 37 4-40 2-40 (405)
294 TIGR03169 Nterm_to_SelD pyridi 97.8 4.3E-05 9.3E-10 52.9 4.2 34 7-40 1-37 (364)
295 TIGR01350 lipoamide_DH dihydro 97.7 7.8E-05 1.7E-09 53.2 5.5 36 5-40 170-205 (461)
296 PF06039 Mqo: Malate:quinone o 97.7 6.7E-05 1.5E-09 53.4 4.8 37 4-40 2-40 (488)
297 PRK07819 3-hydroxybutyryl-CoA 97.7 6.8E-05 1.5E-09 50.6 4.6 40 1-40 1-40 (286)
298 PF02737 3HCDH_N: 3-hydroxyacy 97.7 5.5E-05 1.2E-09 47.7 3.9 33 7-39 1-33 (180)
299 TIGR02053 MerA mercuric reduct 97.7 0.0001 2.2E-09 52.7 5.6 36 5-40 166-201 (463)
300 PRK06416 dihydrolipoamide dehy 97.7 0.0001 2.2E-09 52.7 5.5 36 5-40 172-207 (462)
301 COG0445 GidA Flavin-dependent 97.7 3.8E-05 8.2E-10 55.6 3.2 35 5-39 4-38 (621)
302 PRK09564 coenzyme A disulfide 97.7 9.1E-05 2E-09 52.6 5.2 36 5-40 149-184 (444)
303 PRK07818 dihydrolipoamide dehy 97.7 9.8E-05 2.1E-09 52.9 5.3 58 5-63 172-229 (466)
304 KOG2852 Possible oxidoreductas 97.7 1.9E-05 4.1E-10 53.2 1.5 36 5-40 10-51 (380)
305 PF02558 ApbA: Ketopantoate re 97.7 0.0001 2.2E-09 44.8 4.6 31 8-38 1-31 (151)
306 PRK06370 mercuric reductase; V 97.7 0.0001 2.3E-09 52.7 5.2 37 5-41 171-207 (463)
307 KOG4254 Phytoene desaturase [C 97.6 6.6E-05 1.4E-09 53.3 3.8 39 4-42 13-51 (561)
308 PRK05708 2-dehydropantoate 2-r 97.6 0.00011 2.4E-09 50.0 4.8 34 5-38 2-35 (305)
309 PRK05249 soluble pyridine nucl 97.6 0.00012 2.6E-09 52.3 5.2 36 5-40 175-210 (461)
310 TIGR02374 nitri_red_nirB nitri 97.6 8.4E-05 1.8E-09 56.5 4.6 35 6-40 141-175 (785)
311 PRK14989 nitrite reductase sub 97.6 0.00014 3.1E-09 55.7 5.2 36 5-40 3-42 (847)
312 PRK13512 coenzyme A disulfide 97.6 0.00013 2.8E-09 51.9 4.7 58 5-63 148-205 (438)
313 PRK01438 murD UDP-N-acetylmura 97.6 0.00014 2.9E-09 52.3 4.9 34 5-38 16-49 (480)
314 PRK02705 murD UDP-N-acetylmura 97.6 0.00013 2.8E-09 52.1 4.6 34 7-40 2-35 (459)
315 PF03721 UDPG_MGDP_dh_N: UDP-g 97.6 9.1E-05 2E-09 47.0 3.4 33 7-39 2-34 (185)
316 PRK14989 nitrite reductase sub 97.6 0.00012 2.6E-09 56.0 4.6 58 6-63 146-203 (847)
317 PRK06327 dihydrolipoamide dehy 97.6 0.00021 4.5E-09 51.4 5.6 58 5-63 183-240 (475)
318 PRK06467 dihydrolipoamide dehy 97.6 0.00023 5E-09 51.1 5.7 36 5-40 174-209 (471)
319 TIGR01424 gluta_reduc_2 glutat 97.5 0.00021 4.5E-09 51.0 5.4 36 5-40 166-201 (446)
320 PF01593 Amino_oxidase: Flavin 97.5 0.00016 3.4E-09 50.1 4.7 32 15-46 1-32 (450)
321 KOG2404 Fumarate reductase, fl 97.5 0.00021 4.5E-09 49.1 4.9 37 7-43 11-47 (477)
322 PRK07845 flavoprotein disulfid 97.5 0.00021 4.5E-09 51.3 5.2 58 5-63 177-234 (466)
323 PRK08010 pyridine nucleotide-d 97.5 0.00025 5.3E-09 50.5 5.6 58 5-63 158-215 (441)
324 PRK14106 murD UDP-N-acetylmura 97.5 0.00021 4.6E-09 50.9 5.2 38 1-38 1-38 (450)
325 PRK07846 mycothione reductase; 97.5 0.0002 4.2E-09 51.3 5.0 36 5-40 166-201 (451)
326 PLN02507 glutathione reductase 97.5 0.00019 4.2E-09 51.9 5.0 58 5-63 203-260 (499)
327 PRK06129 3-hydroxyacyl-CoA deh 97.5 0.00016 3.5E-09 49.2 4.3 34 6-39 3-36 (308)
328 PRK08229 2-dehydropantoate 2-r 97.5 0.00021 4.6E-09 49.1 4.8 33 6-38 3-35 (341)
329 PRK06116 glutathione reductase 97.5 0.00027 5.8E-09 50.4 5.4 58 5-63 167-224 (450)
330 KOG2311 NAD/FAD-utilizing prot 97.5 0.00014 3E-09 52.2 3.7 36 3-38 26-61 (679)
331 COG1252 Ndh NADH dehydrogenase 97.5 6.7E-05 1.4E-09 52.8 2.1 73 6-79 156-241 (405)
332 PRK06292 dihydrolipoamide dehy 97.5 0.0003 6.5E-09 50.2 5.4 37 4-40 168-204 (460)
333 PF13434 K_oxygenase: L-lysine 97.5 0.00013 2.9E-09 50.4 3.4 36 5-40 2-38 (341)
334 PTZ00058 glutathione reductase 97.4 0.00027 5.8E-09 51.9 4.9 58 5-63 237-294 (561)
335 PRK08293 3-hydroxybutyryl-CoA 97.4 0.00025 5.5E-09 47.8 4.4 33 6-38 4-36 (287)
336 TIGR01423 trypano_reduc trypan 97.4 0.00033 7.2E-09 50.6 5.2 59 4-63 186-247 (486)
337 PTZ00052 thioredoxin reductase 97.4 0.00032 6.9E-09 50.8 5.1 57 5-63 182-238 (499)
338 PRK06522 2-dehydropantoate 2-r 97.4 0.00028 6E-09 47.6 4.5 32 7-38 2-33 (304)
339 PRK12921 2-dehydropantoate 2-r 97.4 0.00029 6.4E-09 47.6 4.6 30 7-36 2-31 (305)
340 PRK07066 3-hydroxybutyryl-CoA 97.4 0.00035 7.6E-09 48.0 4.9 34 6-39 8-41 (321)
341 COG4529 Uncharacterized protei 97.4 0.00033 7.1E-09 50.0 4.8 35 6-40 2-39 (474)
342 TIGR01438 TGR thioredoxin and 97.4 0.00038 8.2E-09 50.3 5.2 57 5-63 180-236 (484)
343 PRK13748 putative mercuric red 97.4 0.00039 8.5E-09 50.9 5.3 34 5-38 270-303 (561)
344 PTZ00318 NADH dehydrogenase-li 97.4 0.00034 7.4E-09 49.6 4.9 56 7-63 175-244 (424)
345 TIGR03452 mycothione_red mycot 97.4 0.00041 8.9E-09 49.6 5.1 36 5-40 169-204 (452)
346 PRK07530 3-hydroxybutyryl-CoA 97.4 0.00037 8.1E-09 47.0 4.7 34 6-39 5-38 (292)
347 PRK09260 3-hydroxybutyryl-CoA 97.4 0.00032 6.9E-09 47.3 4.3 34 6-39 2-35 (288)
348 PRK06130 3-hydroxybutyryl-CoA 97.4 0.00042 9.1E-09 47.1 4.9 37 1-38 1-37 (311)
349 PRK14618 NAD(P)H-dependent gly 97.3 0.00043 9.4E-09 47.5 4.7 37 1-38 1-37 (328)
350 PRK14694 putative mercuric red 97.3 0.00053 1.1E-08 49.2 5.2 57 5-63 178-234 (468)
351 PLN02546 glutathione reductase 97.3 0.00051 1.1E-08 50.5 5.1 58 5-63 252-309 (558)
352 PRK14619 NAD(P)H-dependent gly 97.3 0.00056 1.2E-08 46.6 5.1 37 3-39 2-38 (308)
353 PRK11064 wecC UDP-N-acetyl-D-m 97.3 0.0004 8.6E-09 49.3 4.4 34 6-39 4-37 (415)
354 PRK06035 3-hydroxyacyl-CoA deh 97.3 0.0004 8.7E-09 46.9 4.2 34 6-39 4-37 (291)
355 PLN02545 3-hydroxybutyryl-CoA 97.3 0.00058 1.3E-08 46.2 4.6 38 1-39 1-38 (295)
356 PRK14620 NAD(P)H-dependent gly 97.3 0.00046 9.9E-09 47.3 4.2 32 7-38 2-33 (326)
357 PRK14727 putative mercuric red 97.3 0.00067 1.5E-08 48.9 5.2 33 5-37 188-220 (479)
358 TIGR02374 nitri_red_nirB nitri 97.2 0.0005 1.1E-08 52.4 4.4 33 8-40 1-36 (785)
359 PTZ00153 lipoamide dehydrogena 97.2 0.00074 1.6E-08 50.5 5.2 37 5-41 312-348 (659)
360 COG1004 Ugd Predicted UDP-gluc 97.2 0.00056 1.2E-08 47.9 4.2 33 7-39 2-34 (414)
361 TIGR01316 gltA glutamate synth 97.2 0.001 2.3E-08 47.5 5.7 34 6-39 273-306 (449)
362 KOG0405 Pyridine nucleotide-di 97.2 0.00081 1.8E-08 46.7 4.8 43 4-46 19-61 (478)
363 PF13738 Pyr_redox_3: Pyridine 97.2 0.0006 1.3E-08 43.2 4.0 34 5-38 167-200 (203)
364 PRK05808 3-hydroxybutyryl-CoA 97.2 0.00064 1.4E-08 45.7 4.3 34 6-39 4-37 (282)
365 TIGR01470 cysG_Nterm siroheme 97.2 0.001 2.3E-08 42.8 5.0 34 5-38 9-42 (205)
366 PRK06719 precorrin-2 dehydroge 97.2 0.00098 2.1E-08 41.2 4.6 31 5-35 13-43 (157)
367 PRK00066 ldh L-lactate dehydro 97.1 0.0014 3E-08 44.9 5.3 39 1-39 2-42 (315)
368 KOG3923 D-aspartate oxidase [A 97.1 0.00077 1.7E-08 45.7 3.9 36 5-40 3-45 (342)
369 PF06100 Strep_67kDa_ant: Stre 97.1 0.00095 2.1E-08 48.1 4.5 38 5-42 2-43 (500)
370 KOG2844 Dimethylglycine dehydr 97.1 0.00079 1.7E-08 50.1 4.2 35 5-39 39-74 (856)
371 cd05292 LDH_2 A subgroup of L- 97.1 0.0011 2.4E-08 45.3 4.7 33 7-39 2-36 (308)
372 PRK06718 precorrin-2 dehydroge 97.1 0.0013 2.9E-08 42.3 4.8 33 5-37 10-42 (202)
373 TIGR01763 MalateDH_bact malate 97.1 0.0014 3.1E-08 44.7 5.0 34 6-39 2-36 (305)
374 TIGR03140 AhpF alkyl hydropero 97.1 0.001 2.2E-08 48.4 4.6 35 6-40 353-387 (515)
375 PRK10669 putative cation:proto 97.1 0.0017 3.7E-08 47.7 5.6 59 5-63 417-480 (558)
376 PRK00094 gpsA NAD(P)H-dependen 97.0 0.0012 2.5E-08 45.1 4.4 33 6-38 2-34 (325)
377 TIGR03026 NDP-sugDHase nucleot 97.0 0.00093 2E-08 47.3 4.0 33 7-39 2-34 (411)
378 TIGR03143 AhpF_homolog putativ 97.0 0.001 2.2E-08 48.9 4.3 34 6-39 144-177 (555)
379 PF01262 AlaDh_PNT_C: Alanine 97.0 0.0016 3.5E-08 40.6 4.6 35 5-39 20-54 (168)
380 PF13241 NAD_binding_7: Putati 97.0 0.0007 1.5E-08 38.8 2.8 34 4-37 6-39 (103)
381 PRK07502 cyclohexadienyl dehyd 97.0 0.0012 2.6E-08 44.9 4.3 38 1-38 1-41 (307)
382 PRK10262 thioredoxin reductase 97.0 0.0013 2.8E-08 44.9 4.4 36 5-40 146-181 (321)
383 PRK12831 putative oxidoreducta 97.0 0.0013 2.8E-08 47.3 4.5 34 6-39 282-315 (464)
384 TIGR02354 thiF_fam2 thiamine b 97.0 0.0018 4E-08 41.6 4.8 33 5-37 21-54 (200)
385 PRK07531 bifunctional 3-hydrox 97.0 0.0015 3.2E-08 47.5 4.7 36 4-39 3-38 (495)
386 PRK12770 putative glutamate sy 97.0 0.0016 3.5E-08 45.0 4.7 33 6-38 173-206 (352)
387 COG1893 ApbA Ketopantoate redu 97.0 0.0013 2.9E-08 44.9 4.1 32 7-38 2-33 (307)
388 PRK04308 murD UDP-N-acetylmura 97.0 0.0023 5E-08 45.7 5.4 39 1-39 1-39 (445)
389 PRK02472 murD UDP-N-acetylmura 96.9 0.0021 4.5E-08 45.8 5.0 38 1-38 1-38 (447)
390 PF00899 ThiF: ThiF family; I 96.9 0.0022 4.8E-08 38.4 4.3 34 5-38 2-36 (135)
391 PRK07417 arogenate dehydrogena 96.9 0.0015 3.2E-08 44.0 3.8 32 7-38 2-33 (279)
392 PRK06223 malate dehydrogenase; 96.9 0.0023 5.1E-08 43.5 4.8 34 6-39 3-37 (307)
393 PRK04148 hypothetical protein; 96.9 0.0011 2.4E-08 39.9 2.8 33 6-39 18-50 (134)
394 PF02254 TrkA_N: TrkA-N domain 96.9 0.0021 4.6E-08 37.3 4.0 56 8-63 1-61 (116)
395 TIGR00518 alaDH alanine dehydr 96.9 0.002 4.4E-08 45.1 4.5 34 5-38 167-200 (370)
396 PRK15317 alkyl hydroperoxide r 96.9 0.002 4.2E-08 47.0 4.5 35 6-40 352-386 (517)
397 PF00056 Ldh_1_N: lactate/mala 96.9 0.0032 7E-08 38.2 4.8 32 7-38 2-36 (141)
398 PRK12475 thiamine/molybdopteri 96.8 0.0028 6.2E-08 43.9 4.9 34 5-38 24-58 (338)
399 cd00401 AdoHcyase S-adenosyl-L 96.8 0.0024 5.2E-08 45.3 4.6 35 5-39 202-236 (413)
400 PF01488 Shikimate_DH: Shikima 96.8 0.0042 9.2E-08 37.3 5.1 35 4-38 11-46 (135)
401 TIGR02279 PaaC-3OHAcCoADH 3-hy 96.8 0.0023 5E-08 46.6 4.5 34 6-39 6-39 (503)
402 PRK09424 pntA NAD(P) transhydr 96.8 0.002 4.3E-08 46.9 4.1 35 5-39 165-199 (509)
403 PF03446 NAD_binding_2: NAD bi 96.8 0.0033 7.2E-08 38.9 4.6 34 6-39 2-35 (163)
404 PTZ00082 L-lactate dehydrogena 96.8 0.0034 7.4E-08 43.2 5.0 34 6-39 7-41 (321)
405 PRK03659 glutathione-regulated 96.8 0.0038 8.3E-08 46.4 5.5 59 5-63 400-463 (601)
406 TIGR01292 TRX_reduct thioredox 96.8 0.0026 5.5E-08 42.6 4.3 36 5-40 141-176 (300)
407 PRK11559 garR tartronate semia 96.8 0.0028 6E-08 42.8 4.5 33 6-38 3-35 (296)
408 PRK08268 3-hydroxy-acyl-CoA de 96.8 0.0028 6.1E-08 46.2 4.7 34 6-39 8-41 (507)
409 PLN02353 probable UDP-glucose 96.7 0.0027 5.8E-08 45.9 4.4 34 6-39 2-37 (473)
410 COG1748 LYS9 Saccharopine dehy 96.7 0.0033 7.1E-08 44.3 4.6 33 6-38 2-35 (389)
411 TIGR01915 npdG NADPH-dependent 96.7 0.0034 7.3E-08 40.8 4.4 32 7-38 2-34 (219)
412 PRK07688 thiamine/molybdopteri 96.7 0.0039 8.5E-08 43.2 4.9 34 5-38 24-58 (339)
413 cd05291 HicDH_like L-2-hydroxy 96.7 0.0037 7.9E-08 42.7 4.7 33 7-39 2-36 (306)
414 PRK15057 UDP-glucose 6-dehydro 96.7 0.0027 5.9E-08 44.7 4.1 32 7-39 2-33 (388)
415 PRK11730 fadB multifunctional 96.7 0.0025 5.4E-08 48.3 4.1 34 6-39 314-347 (715)
416 PRK09496 trkA potassium transp 96.7 0.0031 6.7E-08 44.9 4.4 33 7-39 2-34 (453)
417 PRK11749 dihydropyrimidine deh 96.7 0.0037 7.9E-08 44.8 4.6 34 5-38 273-307 (457)
418 cd01080 NAD_bind_m-THF_DH_Cycl 96.6 0.0048 1E-07 38.6 4.5 34 4-37 43-77 (168)
419 cd01487 E1_ThiF_like E1_ThiF_l 96.6 0.006 1.3E-07 38.3 4.8 32 7-38 1-33 (174)
420 TIGR02437 FadB fatty oxidation 96.6 0.0032 6.9E-08 47.7 4.2 34 6-39 314-347 (714)
421 PRK12778 putative bifunctional 96.6 0.0042 9E-08 47.3 4.8 34 6-39 571-605 (752)
422 PTZ00117 malate dehydrogenase; 96.6 0.0055 1.2E-07 42.1 4.9 35 5-39 5-40 (319)
423 COG5044 MRS6 RAB proteins gera 96.6 0.0055 1.2E-07 42.8 4.9 42 5-46 6-47 (434)
424 TIGR02356 adenyl_thiF thiazole 96.6 0.0061 1.3E-07 39.2 4.9 33 5-37 21-54 (202)
425 PRK15116 sulfur acceptor prote 96.6 0.0064 1.4E-07 40.8 4.9 35 5-39 30-65 (268)
426 TIGR01505 tartro_sem_red 2-hyd 96.5 0.004 8.7E-08 42.0 4.0 33 7-39 1-33 (291)
427 cd05293 LDH_1 A subgroup of L- 96.5 0.0066 1.4E-07 41.6 5.0 34 5-38 3-38 (312)
428 PRK01710 murD UDP-N-acetylmura 96.5 0.0053 1.1E-07 44.1 4.6 33 6-38 15-47 (458)
429 PRK03369 murD UDP-N-acetylmura 96.5 0.0051 1.1E-07 44.6 4.5 32 6-37 13-44 (488)
430 PRK08644 thiamine biosynthesis 96.5 0.0083 1.8E-07 38.9 5.0 33 5-37 28-61 (212)
431 cd01483 E1_enzyme_family Super 96.5 0.0081 1.8E-07 36.3 4.7 32 7-38 1-33 (143)
432 cd01339 LDH-like_MDH L-lactate 96.5 0.0054 1.2E-07 41.7 4.2 32 8-39 1-33 (300)
433 PRK09496 trkA potassium transp 96.5 0.0056 1.2E-07 43.6 4.5 35 5-39 231-265 (453)
434 TIGR02441 fa_ox_alpha_mit fatt 96.5 0.0046 1E-07 47.0 4.2 34 6-39 336-369 (737)
435 PRK03562 glutathione-regulated 96.5 0.0055 1.2E-07 45.8 4.5 59 5-63 400-463 (621)
436 PRK11880 pyrroline-5-carboxyla 96.4 0.006 1.3E-07 40.6 4.3 33 6-38 3-38 (267)
437 cd01075 NAD_bind_Leu_Phe_Val_D 96.4 0.008 1.7E-07 38.6 4.7 33 6-38 29-61 (200)
438 TIGR00936 ahcY adenosylhomocys 96.4 0.0067 1.5E-07 43.0 4.5 34 5-38 195-228 (406)
439 PF13478 XdhC_C: XdhC Rossmann 96.4 0.0044 9.5E-08 37.4 3.2 32 8-39 1-32 (136)
440 PRK08306 dipicolinate synthase 96.4 0.0072 1.6E-07 41.1 4.6 35 5-39 152-186 (296)
441 TIGR02964 xanthine_xdhC xanthi 96.4 0.0084 1.8E-07 39.8 4.7 36 4-39 99-134 (246)
442 PRK08017 oxidoreductase; Provi 96.4 0.0077 1.7E-07 39.4 4.5 33 6-38 3-36 (256)
443 COG1063 Tdh Threonine dehydrog 96.4 0.0066 1.4E-07 42.2 4.3 33 7-39 171-204 (350)
444 cd05290 LDH_3 A subgroup of L- 96.4 0.0089 1.9E-07 40.9 4.8 32 7-38 1-34 (307)
445 COG0771 MurD UDP-N-acetylmuram 96.3 0.0061 1.3E-07 43.7 4.0 36 5-40 7-42 (448)
446 PRK05690 molybdopterin biosynt 96.3 0.0099 2.1E-07 39.4 4.8 33 5-37 32-65 (245)
447 TIGR02355 moeB molybdopterin s 96.3 0.01 2.2E-07 39.2 4.8 34 5-38 24-58 (240)
448 KOG1335 Dihydrolipoamide dehyd 96.3 0.002 4.3E-08 45.3 1.4 59 4-63 210-268 (506)
449 PRK11154 fadJ multifunctional 96.3 0.0057 1.2E-07 46.3 4.0 34 6-39 310-344 (708)
450 PLN02602 lactate dehydrogenase 96.3 0.012 2.5E-07 41.1 5.2 34 6-39 38-73 (350)
451 PRK12549 shikimate 5-dehydroge 96.3 0.0094 2E-07 40.3 4.6 34 5-38 127-161 (284)
452 PRK15461 NADH-dependent gamma- 96.3 0.0081 1.7E-07 40.8 4.2 33 7-39 3-35 (296)
453 TIGR02853 spore_dpaA dipicolin 96.3 0.0084 1.8E-07 40.7 4.2 35 5-39 151-185 (287)
454 TIGR03736 PRTRC_ThiF PRTRC sys 96.3 0.011 2.4E-07 39.2 4.6 36 3-38 9-55 (244)
455 TIGR00872 gnd_rel 6-phosphoglu 96.2 0.0078 1.7E-07 40.9 4.1 33 7-39 2-34 (298)
456 KOG2755 Oxidoreductase [Genera 96.2 0.0032 6.9E-08 42.2 2.1 34 7-40 1-36 (334)
457 PLN02240 UDP-glucose 4-epimera 96.2 0.013 2.9E-07 40.2 5.2 36 1-36 1-37 (352)
458 TIGR03376 glycerol3P_DH glycer 96.2 0.0093 2E-07 41.4 4.4 30 7-36 1-38 (342)
459 KOG2304 3-hydroxyacyl-CoA dehy 96.2 0.0067 1.4E-07 39.9 3.4 36 5-40 11-46 (298)
460 PRK11199 tyrA bifunctional cho 96.2 0.0091 2E-07 41.9 4.4 33 6-38 99-132 (374)
461 TIGR02440 FadJ fatty oxidation 96.2 0.0075 1.6E-07 45.6 4.2 34 6-39 305-339 (699)
462 PRK08328 hypothetical protein; 96.2 0.013 2.9E-07 38.4 4.9 34 5-38 27-61 (231)
463 PRK02006 murD UDP-N-acetylmura 96.2 0.011 2.3E-07 43.0 4.8 33 6-38 8-40 (498)
464 TIGR00561 pntA NAD(P) transhyd 96.2 0.0084 1.8E-07 43.7 4.2 34 5-38 164-197 (511)
465 cd00757 ThiF_MoeB_HesA_family 96.2 0.013 2.9E-07 38.3 4.8 33 5-37 21-54 (228)
466 PRK05476 S-adenosyl-L-homocyst 96.2 0.011 2.3E-07 42.3 4.6 35 5-39 212-246 (425)
467 PRK04690 murD UDP-N-acetylmura 96.2 0.0094 2E-07 43.0 4.4 34 5-38 8-41 (468)
468 PRK05653 fabG 3-ketoacyl-(acyl 96.2 0.015 3.2E-07 37.6 5.0 39 1-39 1-40 (246)
469 TIGR03467 HpnE squalene-associ 96.2 0.01 2.3E-07 41.5 4.5 48 19-66 1-65 (419)
470 PRK01368 murD UDP-N-acetylmura 96.2 0.011 2.5E-07 42.5 4.7 32 5-37 6-37 (454)
471 PRK05562 precorrin-2 dehydroge 96.2 0.012 2.5E-07 38.6 4.3 32 5-36 25-56 (223)
472 COG0686 Ald Alanine dehydrogen 96.1 0.006 1.3E-07 41.8 3.0 34 5-38 168-201 (371)
473 PRK12779 putative bifunctional 96.1 0.01 2.2E-07 46.4 4.6 33 6-38 448-480 (944)
474 cd01078 NAD_bind_H4MPT_DH NADP 96.1 0.015 3.2E-07 36.9 4.7 34 5-38 28-62 (194)
475 PLN02695 GDP-D-mannose-3',5'-e 96.1 0.015 3.2E-07 40.7 4.9 34 4-37 20-54 (370)
476 PTZ00345 glycerol-3-phosphate 96.1 0.013 2.8E-07 41.1 4.6 35 5-39 11-52 (365)
477 cd05311 NAD_bind_2_malic_enz N 96.1 0.015 3.3E-07 38.1 4.7 34 5-38 25-61 (226)
478 PRK12439 NAD(P)H-dependent gly 96.1 0.012 2.6E-07 40.8 4.4 31 6-37 8-38 (341)
479 COG0240 GpsA Glycerol-3-phosph 96.1 0.011 2.4E-07 40.8 4.1 33 6-38 2-34 (329)
480 PF00670 AdoHcyase_NAD: S-aden 96.1 0.011 2.5E-07 36.7 3.8 33 6-38 24-56 (162)
481 PRK07326 short chain dehydroge 96.1 0.015 3.2E-07 37.6 4.6 34 5-38 6-40 (237)
482 COG0287 TyrA Prephenate dehydr 96.1 0.016 3.5E-07 39.2 4.8 35 5-39 3-37 (279)
483 PRK00141 murD UDP-N-acetylmura 96.1 0.013 2.8E-07 42.4 4.6 32 6-37 16-47 (473)
484 COG2509 Uncharacterized FAD-de 96.0 0.0086 1.9E-07 42.9 3.5 35 4-38 17-56 (486)
485 COG1250 FadB 3-hydroxyacyl-CoA 96.0 0.013 2.8E-07 40.1 4.3 35 5-39 3-37 (307)
486 KOG1336 Monodehydroascorbate/f 96.0 0.012 2.5E-07 42.3 4.1 59 5-63 213-271 (478)
487 PLN02256 arogenate dehydrogena 96.0 0.017 3.6E-07 39.5 4.8 34 5-38 36-69 (304)
488 PF10727 Rossmann-like: Rossma 96.0 0.0039 8.6E-08 37.2 1.6 31 5-35 10-40 (127)
489 PRK08217 fabG 3-ketoacyl-(acyl 96.0 0.019 4.1E-07 37.4 4.9 38 1-38 1-39 (253)
490 cd01492 Aos1_SUMO Ubiquitin ac 96.0 0.017 3.6E-07 37.0 4.5 34 5-38 21-55 (197)
491 COG3486 IucD Lysine/ornithine 96.0 0.013 2.9E-07 41.4 4.2 40 1-40 1-41 (436)
492 PRK05442 malate dehydrogenase; 96.0 0.017 3.7E-07 39.9 4.7 35 4-38 3-45 (326)
493 KOG1439 RAB proteins geranylge 96.0 0.0044 9.5E-08 43.6 1.8 45 4-48 3-47 (440)
494 cd00755 YgdL_like Family of ac 96.0 0.02 4.3E-07 37.7 4.8 34 5-38 11-45 (231)
495 PRK12810 gltD glutamate syntha 96.0 0.036 7.8E-07 40.0 6.5 35 5-39 281-316 (471)
496 TIGR01759 MalateDH-SF1 malate 96.0 0.016 3.5E-07 39.9 4.6 35 4-38 2-44 (323)
497 PRK00421 murC UDP-N-acetylmura 96.0 0.014 3E-07 42.0 4.4 33 6-38 8-41 (461)
498 cd01065 NAD_bind_Shikimate_DH 96.0 0.022 4.8E-07 34.6 4.8 35 5-39 19-54 (155)
499 cd05191 NAD_bind_amino_acid_DH 95.9 0.026 5.6E-07 31.1 4.6 32 5-36 23-55 (86)
500 PRK05565 fabG 3-ketoacyl-(acyl 95.9 0.021 4.6E-07 37.0 4.9 38 1-38 1-40 (247)
No 1
>PRK08163 salicylate hydroxylase; Provisional
Probab=99.73 E-value=5.6e-17 Score=112.45 Aligned_cols=91 Identities=36% Similarity=0.473 Sum_probs=77.2
Q ss_pred CCCccccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCCCCCcceeeeeCccHHHHHHHcCChHHHhcccCCcceEEEEE
Q 047339 1 METVEKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGLRGTGAAINFAPNAWLALDALGVSHKLASIYDPVKRLFVTN 80 (115)
Q Consensus 1 m~~~~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~i~~~~~~~~~~~~~~ 80 (115)
|. ++.||+|||||++|+++|+.|++.|++|+|+|+.+.+...+.++.+.+++.++|+.+|+.+.+.+.....+...+++
T Consensus 1 ~~-~~~~V~IvGaGiaGl~~A~~L~~~g~~v~v~Er~~~~~~~g~gi~l~~~~~~~l~~lg~~~~~~~~~~~~~~~~~~~ 79 (396)
T PRK08163 1 MT-KVTPVLIVGGGIGGLAAALALARQGIKVKLLEQAAEIGEIGAGIQLGPNAFSALDALGVGEAARQRAVFTDHLTMMD 79 (396)
T ss_pred CC-CCCeEEEECCcHHHHHHHHHHHhCCCcEEEEeeCcccccccceeeeCchHHHHHHHcCChHHHHhhccCCcceEEEe
Confidence 53 67899999999999999999999999999999998877788899999999999999999999888777777777776
Q ss_pred CCCCee-EEeecC
Q 047339 81 LRTGAT-QETSLA 92 (115)
Q Consensus 81 ~~~~~~-~~~~~~ 92 (115)
..++.. ..+++.
T Consensus 80 ~~~~~~~~~~~~~ 92 (396)
T PRK08163 80 AVDAEEVVRIPTG 92 (396)
T ss_pred CCCCCEEEEeccc
Confidence 544544 444443
No 2
>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]
Probab=99.71 E-value=3e-16 Score=108.87 Aligned_cols=108 Identities=31% Similarity=0.388 Sum_probs=80.9
Q ss_pred cccEEEECCCHHHHHHHHHHHHCCCceEEEcCC-CCCCCcceeeeeCccHHHHHHHcCChHHHhcccCCcceEEEEECCC
Q 047339 5 EKDVVIIGAGIAGLATALALKRLGIKPLVLEKS-DGLRGTGAAINFAPNAWLALDALGVSHKLASIYDPVKRLFVTNLRT 83 (115)
Q Consensus 5 ~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~-~~~~~~~~~~~~~~~~~~~l~~~g~~~~i~~~~~~~~~~~~~~~~~ 83 (115)
.+||+||||||+||++|+.|++.|++|+|+|+. ......++++.+.+++.++|+++|+.+.+.....+......++...
T Consensus 2 ~~dV~IvGaG~aGl~lA~~L~~~G~~V~l~E~~~~~~~~~~r~~~l~~~~~~~L~~lG~~~~i~~~~~~~~~~~~~~~~~ 81 (387)
T COG0654 2 MLDVAIVGAGPAGLALALALARAGLDVTLLERAPRELLERGRGIALSPNALRALERLGLWDRLEALGVPPLHVMVVDDGG 81 (387)
T ss_pred CCCEEEECCCHHHHHHHHHHHhCCCcEEEEccCccccccCceeeeecHhHHHHHHHcCChhhhhhccCCceeeEEEecCC
Confidence 579999999999999999999999999999998 4445567999999999999999999778888777666666655333
Q ss_pred CeeEEeecCCCCCCCCCccccchhHHHhhh
Q 047339 84 GATQETSLAGKSENGSGSQIHTSQKVTRDL 113 (115)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 113 (115)
.....++...... ...........+.+.|
T Consensus 82 ~~~~~~~~~~~~~-~~~~~~~~~~~l~~~L 110 (387)
T COG0654 82 RRLLIFDAAELGR-GALGYVVPRSDLLNAL 110 (387)
T ss_pred ceeEEecccccCC-CcceEEeEhHHHHHHH
Confidence 2224444443322 3444466666666655
No 3
>PRK07538 hypothetical protein; Provisional
Probab=99.69 E-value=5.8e-16 Score=108.15 Aligned_cols=80 Identities=36% Similarity=0.491 Sum_probs=70.1
Q ss_pred ccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCCCCCcceeeeeCccHHHHHHHcCChHHHhcccCCcceEEEEECCCCe
Q 047339 6 KDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGLRGTGAAINFAPNAWLALDALGVSHKLASIYDPVKRLFVTNLRTGA 85 (115)
Q Consensus 6 ~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~i~~~~~~~~~~~~~~~~~~~ 85 (115)
+||+||||||+||++|+.|+++|++|+|+|+.+.....+.++.+.+++++.|+++|+.+.+.....+.....+++. .++
T Consensus 1 ~dV~IVGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~g~gi~l~p~~~~~L~~lgl~~~l~~~~~~~~~~~~~~~-~g~ 79 (413)
T PRK07538 1 MKVLIAGGGIGGLTLALTLHQRGIEVVVFEAAPELRPLGVGINLLPHAVRELAELGLLDALDAIGIRTRELAYFNR-HGQ 79 (413)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCcEEEEEcCCcccccCcceeeCchHHHHHHHCCCHHHHHhhCCCCcceEEEcC-CCC
Confidence 3899999999999999999999999999999988777788899999999999999999998887777777777763 344
Q ss_pred e
Q 047339 86 T 86 (115)
Q Consensus 86 ~ 86 (115)
.
T Consensus 80 ~ 80 (413)
T PRK07538 80 R 80 (413)
T ss_pred E
Confidence 3
No 4
>PRK08244 hypothetical protein; Provisional
Probab=99.69 E-value=4.1e-16 Score=111.09 Aligned_cols=76 Identities=24% Similarity=0.311 Sum_probs=68.3
Q ss_pred ccccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCCCCCcceeeeeCccHHHHHHHcCChHHHhcccCCcceEEEE
Q 047339 4 VEKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGLRGTGAAINFAPNAWLALDALGVSHKLASIYDPVKRLFVT 79 (115)
Q Consensus 4 ~~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~i~~~~~~~~~~~~~ 79 (115)
|++||+||||||+||++|+.|++.|++|+|+|+.+.+...++++.++++++++|+++|+.+.+.+.+.+.....++
T Consensus 1 ~~~dVlIVGaGpaGl~lA~~L~~~G~~v~viEr~~~~~~~~ra~~l~~~~~e~l~~lGl~~~l~~~~~~~~~~~~~ 76 (493)
T PRK08244 1 MKYEVIIIGGGPVGLMLASELALAGVKTCVIERLKETVPYSKALTLHPRTLEILDMRGLLERFLEKGRKLPSGHFA 76 (493)
T ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCCcceeEecHHHHHHHHhcCcHHHHHhhcccccceEEe
Confidence 4589999999999999999999999999999999887778899999999999999999999998877666665554
No 5
>PRK07045 putative monooxygenase; Reviewed
Probab=99.69 E-value=7.9e-16 Score=106.63 Aligned_cols=90 Identities=22% Similarity=0.226 Sum_probs=71.1
Q ss_pred CCCccccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCCCCCcceeeeeCccHHHHHHHcCChHHHhcccCC-cceEEEE
Q 047339 1 METVEKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGLRGTGAAINFAPNAWLALDALGVSHKLASIYDP-VKRLFVT 79 (115)
Q Consensus 1 m~~~~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~i~~~~~~-~~~~~~~ 79 (115)
|.+.++||+||||||+|+++|+.|+++|++|+|+|+.+.+...+.+..+.+++.++|+++|+.+.+.+.... .....++
T Consensus 1 ~~~~~~~V~IiGgGpaGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~l~~~~~~~L~~lGl~~~~~~~~~~~~~~~~~~ 80 (388)
T PRK07045 1 MKNNPVDVLINGSGIAGVALAHLLGARGHSVTVVERAARNRAQNGADLLKPSGIGVVRAMGLLDDVFAAGGLRRDAMRLY 80 (388)
T ss_pred CCCceeEEEEECCcHHHHHHHHHHHhcCCcEEEEeCCCcccCCCcccccCccHHHHHHHcCCHHHHHhcccccccceEEe
Confidence 667789999999999999999999999999999999988755555667999999999999999998876543 3344443
Q ss_pred ECCCCee-EEeecC
Q 047339 80 NLRTGAT-QETSLA 92 (115)
Q Consensus 80 ~~~~~~~-~~~~~~ 92 (115)
. +++. ..+++.
T Consensus 81 ~--~g~~~~~~~~~ 92 (388)
T PRK07045 81 H--DKELIASLDYR 92 (388)
T ss_pred c--CCcEEEEecCC
Confidence 2 3444 445544
No 6
>PRK06126 hypothetical protein; Provisional
Probab=99.68 E-value=7.2e-16 Score=110.99 Aligned_cols=73 Identities=32% Similarity=0.437 Sum_probs=66.4
Q ss_pred CCCccccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCCCCCcceeeeeCccHHHHHHHcCChHHHhcccCCc
Q 047339 1 METVEKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGLRGTGAAINFAPNAWLALDALGVSHKLASIYDPV 73 (115)
Q Consensus 1 m~~~~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~i~~~~~~~ 73 (115)
|+++++||+||||||+||++|+.|+++|++|+|+|+.+.+...+++..+.++++++|+++|+.+.+.+.+.+.
T Consensus 3 ~~~~~~~VlIVGaGpaGL~~Al~La~~G~~v~viEr~~~~~~~~ra~~l~~r~~e~L~~lGl~~~l~~~g~~~ 75 (545)
T PRK06126 3 ENTSETPVLIVGGGPVGLALALDLGRRGVDSILVERKDGTAFNPKANTTSARSMEHFRRLGIADEVRSAGLPV 75 (545)
T ss_pred CCCccCCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCCCCCCccccCCHHHHHHHHhcChHHHHHhhcCCc
Confidence 5677899999999999999999999999999999999877777888999999999999999999998876543
No 7
>PRK08243 4-hydroxybenzoate 3-monooxygenase; Validated
Probab=99.68 E-value=8.7e-16 Score=106.66 Aligned_cols=87 Identities=25% Similarity=0.252 Sum_probs=71.2
Q ss_pred ccccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCCC--CCcceeeeeCccHHHHHHHcCChHHHhcccCCcceEEEEEC
Q 047339 4 VEKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGL--RGTGAAINFAPNAWLALDALGVSHKLASIYDPVKRLFVTNL 81 (115)
Q Consensus 4 ~~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~~--~~~~~~~~~~~~~~~~l~~~g~~~~i~~~~~~~~~~~~~~~ 81 (115)
|++||+||||||+|+++|+.|++.|++|+|+|+.+.. ....++..+.+++.++|+++|+.+.+.+.+.+.+...+++
T Consensus 1 ~~~dV~IvGaGpaGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~a~~l~~~~~~~l~~lGl~~~l~~~~~~~~~~~~~~- 79 (392)
T PRK08243 1 MRTQVAIIGAGPAGLLLGQLLHLAGIDSVVLERRSREYVEGRIRAGVLEQGTVDLLREAGVGERMDREGLVHDGIELRF- 79 (392)
T ss_pred CcceEEEECCCHHHHHHHHHHHhcCCCEEEEEcCCccccccccceeEECHhHHHHHHHcCChHHHHhcCCccCcEEEEE-
Confidence 3689999999999999999999999999999998753 2334555689999999999999999998888877888776
Q ss_pred CCCeeEEeecC
Q 047339 82 RTGATQETSLA 92 (115)
Q Consensus 82 ~~~~~~~~~~~ 92 (115)
++....+++.
T Consensus 80 -~g~~~~~~~~ 89 (392)
T PRK08243 80 -DGRRHRIDLT 89 (392)
T ss_pred -CCEEEEeccc
Confidence 3444455554
No 8
>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=99.68 E-value=9.2e-16 Score=106.97 Aligned_cols=78 Identities=24% Similarity=0.385 Sum_probs=68.1
Q ss_pred ccccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCCCCC--cceeeeeCccHHHHHHHcCChHHHhcccCCcceEEEEEC
Q 047339 4 VEKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGLRG--TGAAINFAPNAWLALDALGVSHKLASIYDPVKRLFVTNL 81 (115)
Q Consensus 4 ~~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~~~~--~~~~~~~~~~~~~~l~~~g~~~~i~~~~~~~~~~~~~~~ 81 (115)
.++||+||||||+|+++|+.|+++|++|+|+|+.+.... .++++.+.+++.++|+.+|+++.+.+...+.....+++.
T Consensus 17 ~~~dV~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~g~~~~l~~~~~~~L~~lGl~~~l~~~~~~~~~~~~~~~ 96 (415)
T PRK07364 17 LTYDVAIVGGGIVGLTLAAALKDSGLRIALIEAQPAEAAAAKGQAYALSLLSARIFEGIGVWEKILPQIGKFRQIRLSDA 96 (415)
T ss_pred cccCEEEECcCHHHHHHHHHHhcCCCEEEEEecCCccccCCCCcEEEechHHHHHHHHCChhhhhHhhcCCccEEEEEeC
Confidence 468999999999999999999999999999999887532 467788999999999999999999887777777777653
No 9
>PRK06183 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Validated
Probab=99.68 E-value=1.1e-15 Score=110.01 Aligned_cols=86 Identities=29% Similarity=0.410 Sum_probs=74.2
Q ss_pred ccccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCCCCCcceeeeeCccHHHHHHHcCChHHHhcccCCcceEEEEECCC
Q 047339 4 VEKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGLRGTGAAINFAPNAWLALDALGVSHKLASIYDPVKRLFVTNLRT 83 (115)
Q Consensus 4 ~~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~i~~~~~~~~~~~~~~~~~ 83 (115)
+.+||+||||||+|+++|+.|+++|++|+|+|+.+.+...++++.++++++++|+.+|+.+.+.+...+.....+++. +
T Consensus 9 ~~~dV~IVGaGp~Gl~lA~~L~~~G~~v~v~Er~~~~~~~~ra~~l~~~~~~~L~~lGl~~~l~~~~~~~~~~~~~~~-~ 87 (538)
T PRK06183 9 HDTDVVIVGAGPVGLTLANLLGQYGVRVLVLERWPTLYDLPRAVGIDDEALRVLQAIGLADEVLPHTTPNHGMRFLDA-K 87 (538)
T ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCCCceeeeCHHHHHHHHHcCChhHHHhhcccCCceEEEcC-C
Confidence 468999999999999999999999999999999988777788999999999999999999999887777777777753 4
Q ss_pred Cee-EEee
Q 047339 84 GAT-QETS 90 (115)
Q Consensus 84 ~~~-~~~~ 90 (115)
++. ..++
T Consensus 88 g~~~~~~~ 95 (538)
T PRK06183 88 GRCLAEIA 95 (538)
T ss_pred CCEEEEEc
Confidence 443 4444
No 10
>PRK06617 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=99.67 E-value=9.6e-16 Score=105.90 Aligned_cols=77 Identities=21% Similarity=0.365 Sum_probs=67.3
Q ss_pred ccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCCC----CCcceeeeeCccHHHHHHHcCChHHHhcccCCcceEEEEEC
Q 047339 6 KDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGL----RGTGAAINFAPNAWLALDALGVSHKLASIYDPVKRLFVTNL 81 (115)
Q Consensus 6 ~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~~----~~~~~~~~~~~~~~~~l~~~g~~~~i~~~~~~~~~~~~~~~ 81 (115)
+||+||||||+|+++|+.|++.|++|+|+|+.+.. ...++++.+++++.++|+.+|+++.+.+...++....+++.
T Consensus 2 ~dV~IvGgG~~Gl~~A~~L~~~G~~v~l~E~~~~~~~~~~~~~r~~~l~~~~~~~L~~lGl~~~l~~~~~~~~~~~~~~~ 81 (374)
T PRK06617 2 SNTVILGCGLSGMLTALSFAQKGIKTTIFESKSVKSPEFFKDIRTTALTPHSKNFLFSIDIWEELEKFVAEMQDIYVVDN 81 (374)
T ss_pred ccEEEECCCHHHHHHHHHHHcCCCeEEEecCCCCCCCccCcCceEEEeCHHHHHHHHHCCcHHHHHhhcCCCcEEEEEEC
Confidence 69999999999999999999999999999987432 22478899999999999999999999887788888888764
Q ss_pred C
Q 047339 82 R 82 (115)
Q Consensus 82 ~ 82 (115)
.
T Consensus 82 ~ 82 (374)
T PRK06617 82 K 82 (374)
T ss_pred C
Confidence 4
No 11
>PRK06185 hypothetical protein; Provisional
Probab=99.67 E-value=1.2e-15 Score=106.22 Aligned_cols=80 Identities=26% Similarity=0.354 Sum_probs=67.0
Q ss_pred CCCccccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCCCCCcceeeeeCccHHHHHHHcCChHHHhccc-CCcceEEEE
Q 047339 1 METVEKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGLRGTGAAINFAPNAWLALDALGVSHKLASIY-DPVKRLFVT 79 (115)
Q Consensus 1 m~~~~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~i~~~~-~~~~~~~~~ 79 (115)
|..+++||+|||||++|+++|+.|++.|++|+|+|+.+......++..+++++.++|+.+|+++.+.+.. .++....++
T Consensus 2 ~~~~~~dV~IvGgG~~Gl~~A~~La~~G~~v~liE~~~~~~~~~r~~~l~~~s~~~L~~lG~~~~~~~~~~~~~~~~~~~ 81 (407)
T PRK06185 2 AEVETTDCCIVGGGPAGMMLGLLLARAGVDVTVLEKHADFLRDFRGDTVHPSTLELMDELGLLERFLELPHQKVRTLRFE 81 (407)
T ss_pred CccccccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCccCccccCceeChhHHHHHHHcCChhHHhhcccceeeeEEEE
Confidence 4457899999999999999999999999999999998765445577889999999999999999887643 456666666
Q ss_pred E
Q 047339 80 N 80 (115)
Q Consensus 80 ~ 80 (115)
+
T Consensus 82 ~ 82 (407)
T PRK06185 82 I 82 (407)
T ss_pred E
Confidence 4
No 12
>TIGR02360 pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase. Members of this family are the enzyme 4-hydroxybenzoate 3-monooxygenase, also called p-hydroxybenzoate hydroxylase. It converts 4-hydroxybenzoate + NADPH + molecular oxygen to protocatechuate + NADPH + water. It contains monooxygenase (pfam01360) and FAD binding (pfam01494) domains. Pathways that contain this enzyme include the protocatechuate 4,5-degradation pathway.
Probab=99.67 E-value=1.9e-15 Score=105.02 Aligned_cols=88 Identities=23% Similarity=0.213 Sum_probs=70.4
Q ss_pred ccccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCCC--CCcceeeeeCccHHHHHHHcCChHHHhcccCCcceEEEEEC
Q 047339 4 VEKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGL--RGTGAAINFAPNAWLALDALGVSHKLASIYDPVKRLFVTNL 81 (115)
Q Consensus 4 ~~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~~--~~~~~~~~~~~~~~~~l~~~g~~~~i~~~~~~~~~~~~~~~ 81 (115)
|++||+||||||+|+++|+.|+++|++|+|+|+.+.. ....++..+.++++++|+.+|+++.+...+.+.....+++.
T Consensus 1 ~~~dV~IVGaG~aGl~~A~~L~~~G~~v~viE~~~~~~~~~~~~a~~l~~~~~~~L~~lGl~~~l~~~~~~~~~~~~~~~ 80 (390)
T TIGR02360 1 MKTQVAIIGAGPSGLLLGQLLHKAGIDNVILERQSRDYVLGRIRAGVLEQGTVDLLREAGVDERMDREGLVHEGTEIAFD 80 (390)
T ss_pred CCceEEEECccHHHHHHHHHHHHCCCCEEEEECCCCcccCCceeEeeECHHHHHHHHHCCChHHHHhcCceecceEEeeC
Confidence 4689999999999999999999999999999998753 22334555889999999999999999887777777777652
Q ss_pred CCCeeEEeecCC
Q 047339 82 RTGATQETSLAG 93 (115)
Q Consensus 82 ~~~~~~~~~~~~ 93 (115)
+....++++.
T Consensus 81 --~~~~~~~~~~ 90 (390)
T TIGR02360 81 --GQRFRIDLKA 90 (390)
T ss_pred --CEEEEEeccc
Confidence 3345555553
No 13
>PRK07190 hypothetical protein; Provisional
Probab=99.67 E-value=1.2e-15 Score=108.64 Aligned_cols=80 Identities=30% Similarity=0.366 Sum_probs=71.0
Q ss_pred CCCccccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCCCCCcceeeeeCccHHHHHHHcCChHHHhcccCCcceEEEEE
Q 047339 1 METVEKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGLRGTGAAINFAPNAWLALDALGVSHKLASIYDPVKRLFVTN 80 (115)
Q Consensus 1 m~~~~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~i~~~~~~~~~~~~~~ 80 (115)
|++..+||+||||||+||++|+.|+++|++|+|+|+.+.+...+++..+.++++++|+.+|+.+.+.....++....++.
T Consensus 1 m~~~~~dVlIVGAGPaGL~lA~~Lar~Gi~V~llEr~~~~~~~gra~~l~~~tle~L~~lGl~~~l~~~~~~~~~~~~~~ 80 (487)
T PRK07190 1 MSTQVTDVVIIGAGPVGLMCAYLGQLCGLNTVIVDKSDGPLEVGRADALNARTLQLLELVDLFDELYPLGKPCNTSSVWA 80 (487)
T ss_pred CCCccceEEEECCCHHHHHHHHHHHHcCCCEEEEeCCCcccccccceEeCHHHHHHHHhcChHHHHHhhCccceeEEEec
Confidence 77888999999999999999999999999999999998877788899999999999999999999887766665555543
No 14
>PRK06475 salicylate hydroxylase; Provisional
Probab=99.66 E-value=1.8e-15 Score=105.37 Aligned_cols=76 Identities=36% Similarity=0.527 Sum_probs=67.1
Q ss_pred ccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCCCCCcceeeeeCccHHHHHHHcCChHHHhcccCCcceEEEEEC
Q 047339 6 KDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGLRGTGAAINFAPNAWLALDALGVSHKLASIYDPVKRLFVTNL 81 (115)
Q Consensus 6 ~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~i~~~~~~~~~~~~~~~ 81 (115)
.+|+||||||+||++|+.|+++|++|+|+|+.+.....+.++.+.++++++|+.+|+++.+.+.........+.+.
T Consensus 3 ~~V~IvGgGiaGl~~A~~L~~~G~~V~i~E~~~~~~~~g~gi~l~~~~~~~L~~~Gl~~~l~~~~~~~~~~~~~~g 78 (400)
T PRK06475 3 GSPLIAGAGVAGLSAALELAARGWAVTIIEKAQELSEVGAGLQLAPNAMRHLERLGVADRLSGTGVTPKALYLMDG 78 (400)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCcEEEEecCCccCcCCccceeChhHHHHHHHCCChHHHhhcccCcceEEEecC
Confidence 6899999999999999999999999999999988777888999999999999999999999877666655555543
No 15
>PRK06753 hypothetical protein; Provisional
Probab=99.66 E-value=1.7e-15 Score=104.36 Aligned_cols=79 Identities=25% Similarity=0.386 Sum_probs=70.5
Q ss_pred cEEEECCCHHHHHHHHHHHHCCCceEEEcCCCCCCCcceeeeeCccHHHHHHHcCChHHHhcccCCcceEEEEECCCCee
Q 047339 7 DVVIIGAGIAGLATALALKRLGIKPLVLEKSDGLRGTGAAINFAPNAWLALDALGVSHKLASIYDPVKRLFVTNLRTGAT 86 (115)
Q Consensus 7 ~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~i~~~~~~~~~~~~~~~~~~~~ 86 (115)
+|+||||||+|+++|+.|+++|++|+|+|+.+.+...+.++.+.+++.+.|+.+|+.+.+.....+.....+++. +++.
T Consensus 2 ~V~IvGgG~aGl~~A~~L~~~g~~v~v~E~~~~~~~~g~gi~l~~~~~~~L~~~gl~~~~~~~~~~~~~~~~~~~-~g~~ 80 (373)
T PRK06753 2 KIAIIGAGIGGLTAAALLQEQGHEVKVFEKNESVKEVGAGIGIGDNVIKKLGNHDLAKGIKNAGQILSTMNLLDD-KGTL 80 (373)
T ss_pred EEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcccccccceeeChHHHHHHHhcChHHHHHhcCCcccceeEEcC-CCCE
Confidence 899999999999999999999999999999998777788899999999999999999998887778878888764 3443
No 16
>PRK06847 hypothetical protein; Provisional
Probab=99.65 E-value=3.3e-15 Score=102.95 Aligned_cols=84 Identities=33% Similarity=0.400 Sum_probs=72.4
Q ss_pred CCCccccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCCCCCcceeeeeCccHHHHHHHcCChHHHhcccCCcceEEEEE
Q 047339 1 METVEKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGLRGTGAAINFAPNAWLALDALGVSHKLASIYDPVKRLFVTN 80 (115)
Q Consensus 1 m~~~~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~i~~~~~~~~~~~~~~ 80 (115)
|+. ..||+||||||+|+++|+.|++.|++|+|+|+.+.+...+.++.+.+++.++|+.+|+.+.+.+...+.....+++
T Consensus 1 m~~-~~~V~IVGaG~aGl~~A~~L~~~g~~v~v~E~~~~~~~~g~g~~l~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~ 79 (375)
T PRK06847 1 MAA-VKKVLIVGGGIGGLSAAIALRRAGIAVDLVEIDPEWRVYGAGITLQGNALRALRELGVLDECLEAGFGFDGVDLFD 79 (375)
T ss_pred CCC-cceEEEECCCHHHHHHHHHHHhCCCCEEEEecCCCCccCCceeeecHHHHHHHHHcCCHHHHHHhCCCccceEEEC
Confidence 554 4799999999999999999999999999999998876778889999999999999999999888777777777775
Q ss_pred CCCCee
Q 047339 81 LRTGAT 86 (115)
Q Consensus 81 ~~~~~~ 86 (115)
. +++.
T Consensus 80 ~-~g~~ 84 (375)
T PRK06847 80 P-DGTL 84 (375)
T ss_pred C-CCCE
Confidence 3 3443
No 17
>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways. In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....
Probab=99.65 E-value=6e-16 Score=105.07 Aligned_cols=68 Identities=41% Similarity=0.615 Sum_probs=60.7
Q ss_pred cccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCCCCCcceeeeeCccHHHHHHHcCChHHHhcccCC
Q 047339 5 EKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGLRGTGAAINFAPNAWLALDALGVSHKLASIYDP 72 (115)
Q Consensus 5 ~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~i~~~~~~ 72 (115)
++||+||||||+|+++|+.|+++|++|+|+|+.+.+...+++..+.++++++|+.+|+.+.+.....+
T Consensus 1 ~~dV~IvGaG~aGl~~A~~L~~~G~~v~i~E~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~~~ 68 (356)
T PF01494_consen 1 EYDVAIVGAGPAGLAAALALARAGIDVTIIERRPDPRPKGRGIGLSPNSLRILQRLGLLDEILARGSP 68 (356)
T ss_dssp EEEEEEE--SHHHHHHHHHHHHTTCEEEEEESSSSCCCSSSSEEEEHHHHHHHHHTTEHHHHHHHSEE
T ss_pred CceEEEECCCHHHHHHHHHHHhcccccccchhcccccccccccccccccccccccccchhhhhhhccc
Confidence 47999999999999999999999999999999998877888999999999999999999998876644
No 18
>PRK06184 hypothetical protein; Provisional
Probab=99.65 E-value=1.2e-15 Score=108.95 Aligned_cols=76 Identities=25% Similarity=0.338 Sum_probs=68.4
Q ss_pred cccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCCCCCcceeeeeCccHHHHHHHcCChHHHhcccCCcceEEEEE
Q 047339 5 EKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGLRGTGAAINFAPNAWLALDALGVSHKLASIYDPVKRLFVTN 80 (115)
Q Consensus 5 ~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~i~~~~~~~~~~~~~~ 80 (115)
++||+||||||+||++|+.|+++|++|+|+|+.+.+...+++..+.++++++|+.+|+.+.+.+...+.....++.
T Consensus 3 ~~dVlIVGaGpaGl~~A~~La~~Gi~v~viE~~~~~~~~~ra~~l~~~~~e~l~~lGl~~~l~~~~~~~~~~~~~~ 78 (502)
T PRK06184 3 TTDVLIVGAGPTGLTLAIELARRGVSFRLIEKAPEPFPGSRGKGIQPRTQEVFDDLGVLDRVVAAGGLYPPMRIYR 78 (502)
T ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCCCcCccceeecHHHHHHHHHcCcHHHHHhcCccccceeEEe
Confidence 4799999999999999999999999999999998877778889999999999999999999988777766666654
No 19
>PRK07588 hypothetical protein; Provisional
Probab=99.64 E-value=4.2e-15 Score=103.12 Aligned_cols=85 Identities=26% Similarity=0.413 Sum_probs=71.7
Q ss_pred ccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCCCCCcceeeeeCccHHHHHHHcCChHHHhcccCCcceEEEEECCCCe
Q 047339 6 KDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGLRGTGAAINFAPNAWLALDALGVSHKLASIYDPVKRLFVTNLRTGA 85 (115)
Q Consensus 6 ~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~i~~~~~~~~~~~~~~~~~~~ 85 (115)
.||+||||||+|+++|+.|+++|++|+|+|+.+.....+.++.+++++.++|+++|+.+.+...+.+.....+++. ++.
T Consensus 1 ~~V~IVGgG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~g~~~~l~~~~~~~l~~lGl~~~l~~~~~~~~~~~~~~~-~g~ 79 (391)
T PRK07588 1 MKVAISGAGIAGPTLAYWLRRYGHEPTLIERAPELRTGGYMVDFWGVGYEVAKRMGITDQLREAGYQIEHVRSVDP-TGR 79 (391)
T ss_pred CeEEEECccHHHHHHHHHHHHCCCceEEEeCCCCccCCCeEEeccCcHHHHHHHcCCHHHHHhccCCccceEEEcC-CCC
Confidence 3899999999999999999999999999999887665677888999999999999999999888888888888763 344
Q ss_pred e-EEeec
Q 047339 86 T-QETSL 91 (115)
Q Consensus 86 ~-~~~~~ 91 (115)
. ..+++
T Consensus 80 ~~~~~~~ 86 (391)
T PRK07588 80 RKADLNV 86 (391)
T ss_pred EEEEecH
Confidence 3 44443
No 20
>PRK08294 phenol 2-monooxygenase; Provisional
Probab=99.64 E-value=1.7e-15 Score=110.76 Aligned_cols=77 Identities=25% Similarity=0.272 Sum_probs=69.9
Q ss_pred cccEEEECCCHHHHHHHHHHHH-CCCceEEEcCCCCCCCcceeeeeCccHHHHHHHcCChHHHhcccCCcceEEEEEC
Q 047339 5 EKDVVIIGAGIAGLATALALKR-LGIKPLVLEKSDGLRGTGAAINFAPNAWLALDALGVSHKLASIYDPVKRLFVTNL 81 (115)
Q Consensus 5 ~~~v~IvG~G~~Gl~~A~~l~~-~g~~v~viE~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~i~~~~~~~~~~~~~~~ 81 (115)
++||+||||||+||++|+.|++ .|++|.|+|+.+.+...+++..+.++++++|+.+|+.+.+.+.+.+.....++..
T Consensus 32 ~~dVlIVGAGPaGL~lA~~Lar~~Gi~v~IiE~~~~~~~~grA~gl~prtleiL~~lGl~d~l~~~g~~~~~~~~~~~ 109 (634)
T PRK08294 32 EVDVLIVGCGPAGLTLAAQLSAFPDITTRIVERKPGRLELGQADGIACRTMEMFQAFGFAERILKEAYWINETAFWKP 109 (634)
T ss_pred CCCEEEECCCHHHHHHHHHHhcCCCCcEEEEEcCCCCCCCCeeeEEChHHHHHHHhccchHHHHhhcccccceEEEcC
Confidence 6899999999999999999999 5999999999988777788899999999999999999999988888777777753
No 21
>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=99.64 E-value=1.3e-15 Score=105.48 Aligned_cols=81 Identities=26% Similarity=0.363 Sum_probs=69.5
Q ss_pred CCCccccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCCCCCcceeeeeCccHHHHHHHcCChHHHhcccCCcceEEEEE
Q 047339 1 METVEKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGLRGTGAAINFAPNAWLALDALGVSHKLASIYDPVKRLFVTN 80 (115)
Q Consensus 1 m~~~~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~i~~~~~~~~~~~~~~ 80 (115)
|.+.++||+||||||+|+++|+.|+++|++|+|+|+.+... ..++..+.+++.++|+.+|+++.+.+...++....+++
T Consensus 3 ~~~~~~dViIVGaG~~Gl~~A~~L~~~G~~v~liE~~~~~~-~~r~~~l~~~s~~~l~~lgl~~~~~~~~~~~~~~~~~~ 81 (388)
T PRK07494 3 MEKEHTDIAVIGGGPAGLAAAIALARAGASVALVAPEPPYA-DLRTTALLGPSIRFLERLGLWARLAPHAAPLQSMRIVD 81 (388)
T ss_pred CCCCCCCEEEECcCHHHHHHHHHHhcCCCeEEEEeCCCCCC-CcchhhCcHHHHHHHHHhCchhhhHhhcceeeEEEEEe
Confidence 55667899999999999999999999999999999987653 34566778889999999999999988888888888876
Q ss_pred CC
Q 047339 81 LR 82 (115)
Q Consensus 81 ~~ 82 (115)
..
T Consensus 82 ~~ 83 (388)
T PRK07494 82 AT 83 (388)
T ss_pred CC
Confidence 43
No 22
>PRK08132 FAD-dependent oxidoreductase; Provisional
Probab=99.64 E-value=7.2e-15 Score=105.94 Aligned_cols=77 Identities=29% Similarity=0.358 Sum_probs=67.3
Q ss_pred ccccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCCCCCcceeeeeCccHHHHHHHcCChHHHhcccCCcceEEEEE
Q 047339 4 VEKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGLRGTGAAINFAPNAWLALDALGVSHKLASIYDPVKRLFVTN 80 (115)
Q Consensus 4 ~~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~i~~~~~~~~~~~~~~ 80 (115)
+++||+||||||+||++|+.|++.|++|+|+|+.+.....+++..++++++++|+.+|+.+.+.+.+.+.....++.
T Consensus 22 ~~~dVlIVGaGpaGl~lA~~L~~~G~~v~viE~~~~~~~~~ra~~l~~~~~~~l~~lGl~~~l~~~~~~~~~~~~~~ 98 (547)
T PRK08132 22 ARHPVVVVGAGPVGLALAIDLAQQGVPVVLLDDDDTLSTGSRAICFAKRSLEIFDRLGCGERMVDKGVSWNVGKVFL 98 (547)
T ss_pred CcCCEEEECCCHHHHHHHHHHHhCCCcEEEEeCCCCCCCCCeEEEEcHHHHHHHHHcCCcHHHHhhCceeeceeEEe
Confidence 56899999999999999999999999999999998877778899999999999999999999887766554444444
No 23
>PRK07333 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=99.64 E-value=5.2e-15 Score=102.80 Aligned_cols=77 Identities=34% Similarity=0.430 Sum_probs=67.8
Q ss_pred ccEEEECCCHHHHHHHHHHHHCC--CceEEEcCCCCCC--CcceeeeeCccHHHHHHHcCChHHHhcccCCcceEEEEEC
Q 047339 6 KDVVIIGAGIAGLATALALKRLG--IKPLVLEKSDGLR--GTGAAINFAPNAWLALDALGVSHKLASIYDPVKRLFVTNL 81 (115)
Q Consensus 6 ~~v~IvG~G~~Gl~~A~~l~~~g--~~v~viE~~~~~~--~~~~~~~~~~~~~~~l~~~g~~~~i~~~~~~~~~~~~~~~ 81 (115)
+||+||||||+|+++|+.|+++| ++|+|+|+.+... ..+++..+.+++.++|+.+|+++.+.....+.....+++.
T Consensus 2 ~dv~IvGaG~aGl~~A~~L~~~g~g~~v~liE~~~~~~~~~~~~~~~l~~~~~~~l~~lGl~~~~~~~~~~~~~~~~~~~ 81 (403)
T PRK07333 2 CDVVIAGGGYVGLALAVALKQAAPHLPVTVVDAAPAGAWSRDPRASAIAAAARRMLEALGVWDEIAPEAQPITDMVITDS 81 (403)
T ss_pred CCEEEECccHHHHHHHHHHhcCCCCCEEEEEeCCCcccCCCCcceEEecHHHHHHHHHCCChhhhhhhcCcccEEEEEeC
Confidence 79999999999999999999995 9999999987642 3468899999999999999999999888888888888764
Q ss_pred C
Q 047339 82 R 82 (115)
Q Consensus 82 ~ 82 (115)
.
T Consensus 82 ~ 82 (403)
T PRK07333 82 R 82 (403)
T ss_pred C
Confidence 4
No 24
>PRK09126 hypothetical protein; Provisional
Probab=99.63 E-value=2.1e-15 Score=104.50 Aligned_cols=79 Identities=28% Similarity=0.369 Sum_probs=64.5
Q ss_pred ccccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCCCC-----CcceeeeeCccHHHHHHHcCChHHHhccc-CCcceEE
Q 047339 4 VEKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGLR-----GTGAAINFAPNAWLALDALGVSHKLASIY-DPVKRLF 77 (115)
Q Consensus 4 ~~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~~~-----~~~~~~~~~~~~~~~l~~~g~~~~i~~~~-~~~~~~~ 77 (115)
|++||+||||||+|+++|+.|+++|++|+|+|+.+.+. ..+.++.+.+++.++|+++|+.+.+.... .+.....
T Consensus 2 ~~~dviIvGgG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~g~~i~l~~~~~~~L~~lGl~~~~~~~~~~~~~~~~ 81 (392)
T PRK09126 2 MHSDIVVVGAGPAGLSFARSLAGSGLKVTLIERQPLAALADPAFDGREIALTHASREILQRLGAWDRIPEDEISPLRDAK 81 (392)
T ss_pred CcccEEEECcCHHHHHHHHHHHhCCCcEEEEeCCCcccccCCCCchhHHHhhHHHHHHHHHCCChhhhccccCCccceEE
Confidence 46899999999999999999999999999999987642 24566778899999999999998887654 4555666
Q ss_pred EEECC
Q 047339 78 VTNLR 82 (115)
Q Consensus 78 ~~~~~ 82 (115)
+++..
T Consensus 82 ~~~~~ 86 (392)
T PRK09126 82 VLNGR 86 (392)
T ss_pred EEcCC
Confidence 66533
No 25
>PRK05868 hypothetical protein; Validated
Probab=99.63 E-value=3.7e-15 Score=103.03 Aligned_cols=80 Identities=29% Similarity=0.367 Sum_probs=70.7
Q ss_pred ccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCCCCCcceeeeeCccHHHHHHHcCChHHHhcccCCcceEEEEECCCCe
Q 047339 6 KDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGLRGTGAAINFAPNAWLALDALGVSHKLASIYDPVKRLFVTNLRTGA 85 (115)
Q Consensus 6 ~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~i~~~~~~~~~~~~~~~~~~~ 85 (115)
.||+||||||+|+++|+.|+++|++|+|+|+.+.+...+.++.++++++++|+++|+.+.+.....+.....+++. ++.
T Consensus 2 ~~V~IvGgG~aGl~~A~~L~~~G~~v~viE~~~~~~~~g~~i~~~~~a~~~L~~lGl~~~~~~~~~~~~~~~~~~~-~g~ 80 (372)
T PRK05868 2 KTVVVSGASVAGTAAAYWLGRHGYSVTMVERHPGLRPGGQAIDVRGPALDVLERMGLLAAAQEHKTRIRGASFVDR-DGN 80 (372)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCceeeeeCchHHHHHHhcCCHHHHHhhccCccceEEEeC-CCC
Confidence 5899999999999999999999999999999988877778889999999999999999999887777878887764 454
Q ss_pred e
Q 047339 86 T 86 (115)
Q Consensus 86 ~ 86 (115)
.
T Consensus 81 ~ 81 (372)
T PRK05868 81 E 81 (372)
T ss_pred E
Confidence 3
No 26
>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated
Probab=99.63 E-value=1e-14 Score=101.17 Aligned_cols=79 Identities=30% Similarity=0.412 Sum_probs=64.7
Q ss_pred ccccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCCCC-----CcceeeeeCccHHHHHHHcCChHHHhcc-cCCcceEE
Q 047339 4 VEKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGLR-----GTGAAINFAPNAWLALDALGVSHKLASI-YDPVKRLF 77 (115)
Q Consensus 4 ~~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~~~-----~~~~~~~~~~~~~~~l~~~g~~~~i~~~-~~~~~~~~ 77 (115)
+.+||+||||||+|+++|+.|+++|++|+|+|+.+.+. ...+...+.+++.++|+.+|+++.+.+. ..++....
T Consensus 5 ~~~dV~IvGaG~aGl~~A~~La~~G~~v~liE~~~~~~~~~~~~~~r~~~l~~~~~~~l~~lGl~~~~~~~~~~~~~~~~ 84 (392)
T PRK08773 5 SRRDAVIVGGGVVGAACALALADAGLSVALVEGREPPRWQADQPDLRVYAFAADNAALLDRLGVWPAVRAARAQPYRRMR 84 (392)
T ss_pred CCCCEEEECcCHHHHHHHHHHhcCCCEEEEEeCCCCcccccCCCCCEEEEecHHHHHHHHHCCchhhhhHhhCCcccEEE
Confidence 56899999999999999999999999999999986532 1235577889999999999999998763 55666666
Q ss_pred EEECC
Q 047339 78 VTNLR 82 (115)
Q Consensus 78 ~~~~~ 82 (115)
+++..
T Consensus 85 ~~~~~ 89 (392)
T PRK08773 85 VWDAG 89 (392)
T ss_pred EEeCC
Confidence 66543
No 27
>TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family. This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) maki
Probab=99.62 E-value=8.2e-15 Score=101.07 Aligned_cols=76 Identities=30% Similarity=0.486 Sum_probs=65.6
Q ss_pred cEEEECCCHHHHHHHHHHHHCCCceEEEcCCCCCCC-----cceeeeeCccHHHHHHHcCChHHHhc-ccCCcceEEEEE
Q 047339 7 DVVIIGAGIAGLATALALKRLGIKPLVLEKSDGLRG-----TGAAINFAPNAWLALDALGVSHKLAS-IYDPVKRLFVTN 80 (115)
Q Consensus 7 ~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~~~~-----~~~~~~~~~~~~~~l~~~g~~~~i~~-~~~~~~~~~~~~ 80 (115)
||+||||||+|+++|+.|+++|++|+|+|+.+.++. .+++..+.+++.+.|+.+|+.+.+.+ ...+.....++.
T Consensus 1 dViIvGaG~aGl~~A~~L~~~G~~v~v~Er~~~~~~~~~~~~~~~~~l~~~~~~~l~~lGl~~~~~~~~~~~~~~~~~~~ 80 (385)
T TIGR01988 1 DIVIVGGGMVGLALALALARSGLKIALIEATPAEAAATPGFDNRVSALSAASIRLLEKLGVWDKIEPDRAQPIRDIHVSD 80 (385)
T ss_pred CEEEECCCHHHHHHHHHHhcCCCEEEEEeCCCccccCCCCCCcceeecCHHHHHHHHHCCchhhhhhhcCCCceEEEEEe
Confidence 799999999999999999999999999999987532 24778899999999999999999887 677777777766
Q ss_pred CC
Q 047339 81 LR 82 (115)
Q Consensus 81 ~~ 82 (115)
..
T Consensus 81 ~~ 82 (385)
T TIGR01988 81 GG 82 (385)
T ss_pred CC
Confidence 43
No 28
>PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated
Probab=99.61 E-value=1.5e-14 Score=100.87 Aligned_cols=77 Identities=26% Similarity=0.258 Sum_probs=64.9
Q ss_pred cccEEEECCCHHHHHHHHHHHHCCCceEEEcCC-CCCC----CcceeeeeCccHHHHHHHcCChHHHhcc-cCCcceEEE
Q 047339 5 EKDVVIIGAGIAGLATALALKRLGIKPLVLEKS-DGLR----GTGAAINFAPNAWLALDALGVSHKLASI-YDPVKRLFV 78 (115)
Q Consensus 5 ~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~-~~~~----~~~~~~~~~~~~~~~l~~~g~~~~i~~~-~~~~~~~~~ 78 (115)
.+||+||||||+|+++|+.|++.|++|+|+|+. +... ...++..+.++++++|+.+|+++.+.+. ..++....+
T Consensus 4 ~~dV~IvGaG~~Gl~~A~~L~~~G~~v~viE~~~~~~~~~~~~~~r~~~l~~~~~~~L~~lGl~~~l~~~~~~~~~~~~~ 83 (405)
T PRK08850 4 SVDVAIIGGGMVGLALAAALKESDLRIAVIEGQLPEEALNELPDVRVSALSRSSEHILRNLGAWQGIEARRAAPYIAMEV 83 (405)
T ss_pred cCCEEEECccHHHHHHHHHHHhCCCEEEEEcCCCCcccccCCCCcceecccHHHHHHHHhCCchhhhhhhhCCcccEEEE
Confidence 589999999999999999999999999999986 2221 2356788999999999999999999764 677777888
Q ss_pred EEC
Q 047339 79 TNL 81 (115)
Q Consensus 79 ~~~ 81 (115)
++.
T Consensus 84 ~~~ 86 (405)
T PRK08850 84 WEQ 86 (405)
T ss_pred EeC
Confidence 764
No 29
>PRK08013 oxidoreductase; Provisional
Probab=99.61 E-value=1.6e-14 Score=100.67 Aligned_cols=78 Identities=26% Similarity=0.221 Sum_probs=65.0
Q ss_pred cccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCCCCC------cceeeeeCccHHHHHHHcCChHHHhcc-cCCcceEE
Q 047339 5 EKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGLRG------TGAAINFAPNAWLALDALGVSHKLASI-YDPVKRLF 77 (115)
Q Consensus 5 ~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~~~~------~~~~~~~~~~~~~~l~~~g~~~~i~~~-~~~~~~~~ 77 (115)
++||+||||||+|+++|+.|+++|++|+|+|+.+.+.. ..++..+.++++++|+++|+++.+.+. ..+++...
T Consensus 3 ~~dV~IvGaGpaGl~~A~~La~~G~~v~viE~~~~~~~~~g~~~~~r~~~l~~~s~~~L~~lGl~~~~~~~~~~~~~~~~ 82 (400)
T PRK08013 3 SVDVVIAGGGMVGLAVACGLQGSGLRVAVLEQRVPEPLAADAPPALRVSAINAASEKLLTRLGVWQDILARRASCYHGME 82 (400)
T ss_pred cCCEEEECcCHHHHHHHHHHhhCCCEEEEEeCCCCcccccCCCCCceeeecchhHHHHHHHcCCchhhhhhcCccccEEE
Confidence 47999999999999999999999999999999876432 235667899999999999999998765 45777777
Q ss_pred EEECC
Q 047339 78 VTNLR 82 (115)
Q Consensus 78 ~~~~~ 82 (115)
+++..
T Consensus 83 ~~~~~ 87 (400)
T PRK08013 83 VWDKD 87 (400)
T ss_pred EEeCC
Confidence 77643
No 30
>PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=99.60 E-value=1.4e-14 Score=100.97 Aligned_cols=78 Identities=26% Similarity=0.315 Sum_probs=63.6
Q ss_pred ccccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCCC--------CCcceeeeeCccHHHHHHHcCChHHHhcc-cCCcc
Q 047339 4 VEKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGL--------RGTGAAINFAPNAWLALDALGVSHKLASI-YDPVK 74 (115)
Q Consensus 4 ~~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~~--------~~~~~~~~~~~~~~~~l~~~g~~~~i~~~-~~~~~ 74 (115)
|.+||+||||||+|+++|+.|+++|++|+|+|+.+.. ....++..+.+++.++|+.+|+++.+.+. ..+..
T Consensus 1 ~~~dV~IVGaG~aGl~~A~~L~~~G~~v~viE~~~~~~~~~~~~~~~~~r~~~l~~~~~~~L~~lGl~~~l~~~~~~~~~ 80 (405)
T PRK05714 1 MRADLLIVGAGMVGSALALALQGSGLEVLLLDGGPLSVKPFDPQAPFEPRVSALSAASQRILERLGAWDGIAARRASPYS 80 (405)
T ss_pred CCccEEEECccHHHHHHHHHHhcCCCEEEEEcCCCccccccccCCCCCccchhhhHHHHHHHHHCChhhhhhHhhCccce
Confidence 3579999999999999999999999999999997621 11335677899999999999999988753 45666
Q ss_pred eEEEEEC
Q 047339 75 RLFVTNL 81 (115)
Q Consensus 75 ~~~~~~~ 81 (115)
...+++.
T Consensus 81 ~~~~~~~ 87 (405)
T PRK05714 81 EMQVWDG 87 (405)
T ss_pred eEEEEcC
Confidence 7777654
No 31
>PTZ00367 squalene epoxidase; Provisional
Probab=99.59 E-value=1.3e-14 Score=104.88 Aligned_cols=88 Identities=27% Similarity=0.271 Sum_probs=71.2
Q ss_pred ccccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCC-CCCcceeeeeCccHHHHHHHcCChHHHhcccCCcceEEEEECC
Q 047339 4 VEKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDG-LRGTGAAINFAPNAWLALDALGVSHKLASIYDPVKRLFVTNLR 82 (115)
Q Consensus 4 ~~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~-~~~~~~~~~~~~~~~~~l~~~g~~~~i~~~~~~~~~~~~~~~~ 82 (115)
.++||+|||||++|+++|+.|+++|++|+|+|+... ......+..+.+++.++|+++|+++.+.....++.+..+++.
T Consensus 32 ~~~dViIVGaGiaGlalA~aLar~G~~V~VlEr~~~~~~~r~~G~~L~p~g~~~L~~LGL~d~l~~i~~~~~~~~v~~~- 110 (567)
T PTZ00367 32 YDYDVIIVGGSIAGPVLAKALSKQGRKVLMLERDLFSKPDRIVGELLQPGGVNALKELGMEECAEGIGMPCFGYVVFDH- 110 (567)
T ss_pred cCccEEEECCCHHHHHHHHHHHhcCCEEEEEccccccccchhhhhhcCHHHHHHHHHCCChhhHhhcCcceeeeEEEEC-
Confidence 468999999999999999999999999999999762 112345667999999999999999999888888888888763
Q ss_pred CCeeEEeecC
Q 047339 83 TGATQETSLA 92 (115)
Q Consensus 83 ~~~~~~~~~~ 92 (115)
+++...++++
T Consensus 111 ~G~~~~i~~~ 120 (567)
T PTZ00367 111 KGKQVKLPYG 120 (567)
T ss_pred CCCEEEecCC
Confidence 3544445543
No 32
>KOG2614 consensus Kynurenine 3-monooxygenase and related flavoprotein monooxygenases [Energy production and conversion; General function prediction only]
Probab=99.59 E-value=1.4e-14 Score=99.43 Aligned_cols=90 Identities=39% Similarity=0.584 Sum_probs=79.5
Q ss_pred cccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCCCCCcceeeeeCccHHHHHHHcCChHHHhcccCCcceEEEEECCCC
Q 047339 5 EKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGLRGTGAAINFAPNAWLALDALGVSHKLASIYDPVKRLFVTNLRTG 84 (115)
Q Consensus 5 ~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~i~~~~~~~~~~~~~~~~~~ 84 (115)
+.+|+|||||++||++|+.|++.|++|+|+|+...+++.+.++++.-++.+.|+.+++.+.+...+.++.........+|
T Consensus 2 ~~~VvIvGgGI~Gla~A~~l~r~G~~v~VlE~~e~~R~~g~si~L~~ng~~aLkai~~~e~i~~~gip~~~~v~~~~~sg 81 (420)
T KOG2614|consen 2 EPKVVIVGGGIVGLATALALHRKGIDVVVLESREDPRGEGTSINLALNGWRALKAIGLKEQIREQGIPLGGRVLIHGDSG 81 (420)
T ss_pred CCcEEEECCcHHHHHHHHHHHHcCCeEEEEeeccccccCCcceeehhhHHHHHHHcccHHHHHHhcCcccceeeeecCCC
Confidence 46899999999999999999999999999999988888899999999999999999999999999999988866666667
Q ss_pred ee-EEeecCCC
Q 047339 85 AT-QETSLAGK 94 (115)
Q Consensus 85 ~~-~~~~~~~~ 94 (115)
+. .++++..+
T Consensus 82 ~~~~~~~~~~~ 92 (420)
T KOG2614|consen 82 KEVSRILYGEP 92 (420)
T ss_pred CeeEecccCCc
Confidence 65 67766533
No 33
>PLN02985 squalene monooxygenase
Probab=99.59 E-value=2.7e-14 Score=102.31 Aligned_cols=88 Identities=25% Similarity=0.319 Sum_probs=70.3
Q ss_pred CccccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCCCCCcceeeeeCccHHHHHHHcCChHHHhcc-cCCcceEEEEEC
Q 047339 3 TVEKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGLRGTGAAINFAPNAWLALDALGVSHKLASI-YDPVKRLFVTNL 81 (115)
Q Consensus 3 ~~~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~i~~~-~~~~~~~~~~~~ 81 (115)
...+||+|||||++|+++|+.|+++|++|+|+|+.........+..+.+++.+.|+++|+++.+... ..+..+..++.
T Consensus 41 ~~~~DViIVGAG~aGlalA~aLa~~G~~V~vlEr~~~~~~~~~g~~L~p~g~~~L~~LGl~d~l~~~~~~~~~~~~v~~- 119 (514)
T PLN02985 41 DGATDVIIVGAGVGGSALAYALAKDGRRVHVIERDLREPERMMGEFMQPGGRFMLSKLGLEDCLEGIDAQKATGMAVYK- 119 (514)
T ss_pred CCCceEEEECCCHHHHHHHHHHHHcCCeEEEEECcCCCCccccccccCchHHHHHHHcCCcchhhhccCcccccEEEEE-
Confidence 4568999999999999999999999999999999765444567888999999999999999988764 34566666654
Q ss_pred CCCeeEEeecC
Q 047339 82 RTGATQETSLA 92 (115)
Q Consensus 82 ~~~~~~~~~~~ 92 (115)
+++....+++
T Consensus 120 -~g~~~~~~~~ 129 (514)
T PLN02985 120 -DGKEAVAPFP 129 (514)
T ss_pred -CCEEEEEeCC
Confidence 4444344554
No 34
>TIGR01989 COQ6 Ubiquinone biosynthesis mono0xygenase COQ6. This model represents the monooxygenase responsible for the 4-hydroxylateion of the phenol ring in the aerobic biosynthesis of ubiquinone
Probab=99.58 E-value=2.9e-14 Score=100.43 Aligned_cols=76 Identities=29% Similarity=0.367 Sum_probs=63.1
Q ss_pred ccEEEECCCHHHHHHHHHHHH----CCCceEEEcCCCCCCC------------cceeeeeCccHHHHHHHcCChHHHhcc
Q 047339 6 KDVVIIGAGIAGLATALALKR----LGIKPLVLEKSDGLRG------------TGAAINFAPNAWLALDALGVSHKLASI 69 (115)
Q Consensus 6 ~~v~IvG~G~~Gl~~A~~l~~----~g~~v~viE~~~~~~~------------~~~~~~~~~~~~~~l~~~g~~~~i~~~ 69 (115)
+||+||||||+|+++|+.|++ +|++|+|+|+.+.+.. ..+++.+.++++++|+.+|+++.+.+.
T Consensus 1 ~DV~IVGaGp~Gl~~A~~La~~~~~~G~~v~viE~~~~~~~~~~~~~~~~~~~~~R~~~l~~~s~~~L~~lG~~~~l~~~ 80 (437)
T TIGR01989 1 FDVVIVGGGPVGLALAAALGNNPLTKDLKVLLLDAVDNPKLKSRNYEKPDGPYSNRVSSITPASISFFKKIGAWDHIQSD 80 (437)
T ss_pred CcEEEECCcHHHHHHHHHHhcCcccCCCeEEEEeCCCCcccccccccCCCCCCCCCeEEcCHHHHHHHHHcCchhhhhhh
Confidence 589999999999999999999 8999999999543321 357899999999999999999999765
Q ss_pred -cCCcceEEEEEC
Q 047339 70 -YDPVKRLFVTNL 81 (115)
Q Consensus 70 -~~~~~~~~~~~~ 81 (115)
..++....+++.
T Consensus 81 ~~~~~~~~~~~~~ 93 (437)
T TIGR01989 81 RIQPFGRMQVWDG 93 (437)
T ss_pred cCCceeeEEEecC
Confidence 356666766653
No 35
>TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase. This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype.
Probab=99.57 E-value=1.6e-14 Score=99.82 Aligned_cols=74 Identities=34% Similarity=0.553 Sum_probs=63.8
Q ss_pred cEEEECCCHHHHHHHHHHHHCC-CceEEEcCCCCCCCc----ceeeeeCccHHHHHHHcCChHHHhcccCCcceEEEEE
Q 047339 7 DVVIIGAGIAGLATALALKRLG-IKPLVLEKSDGLRGT----GAAINFAPNAWLALDALGVSHKLASIYDPVKRLFVTN 80 (115)
Q Consensus 7 ~v~IvG~G~~Gl~~A~~l~~~g-~~v~viE~~~~~~~~----~~~~~~~~~~~~~l~~~g~~~~i~~~~~~~~~~~~~~ 80 (115)
||+||||||+|+++|+.|+++| ++|+|+|+.+.+... .++..+.+++.+.|+.+|+.+.+.....+.....+.+
T Consensus 1 dv~IvGaG~aGl~~A~~L~~~G~~~v~v~E~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~~~~~~~~~~~ 79 (382)
T TIGR01984 1 DVIIVGGGLVGLSLALALSRLGKIKIALIEANSPSAAQPGFDARSLALSYGSKQILEKLGLWPKLAPFATPILDIHVSD 79 (382)
T ss_pred CEEEECccHHHHHHHHHHhcCCCceEEEEeCCCccccCCCCCCeeEeccHHHHHHHHHCCChhhhHhhcCccceEEEEc
Confidence 7999999999999999999999 999999998765432 4678899999999999999999887777776666654
No 36
>PRK08020 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed
Probab=99.57 E-value=5e-14 Score=97.67 Aligned_cols=84 Identities=26% Similarity=0.348 Sum_probs=66.4
Q ss_pred CCCccccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCCCC------CcceeeeeCccHHHHHHHcCChHHHhcc-cCCc
Q 047339 1 METVEKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGLR------GTGAAINFAPNAWLALDALGVSHKLASI-YDPV 73 (115)
Q Consensus 1 m~~~~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~~~------~~~~~~~~~~~~~~~l~~~g~~~~i~~~-~~~~ 73 (115)
|...++||+||||||+|+++|+.|++.|++|+|+|+.+... ...+...+.+++.++|+.+|+++.+... ..++
T Consensus 1 ~~~~~~dViIvGgG~aGl~~A~~La~~G~~V~liE~~~~~~~~~~~~~~~r~~~l~~~~~~~l~~lGl~~~~~~~~~~~~ 80 (391)
T PRK08020 1 MTNQPTDIAIVGGGMVGAALALGLAQHGFSVAVLEHAAPAPFDADSQPDVRISAISAASVALLKGLGVWDAVQAMRSHPY 80 (391)
T ss_pred CCcccccEEEECcCHHHHHHHHHHhcCCCEEEEEcCCCCCcccccCCCCceEEeccHHHHHHHHHcCChhhhhhhhCccc
Confidence 66778999999999999999999999999999999875421 1235678899999999999999888763 3455
Q ss_pred ceEEEEECCCC
Q 047339 74 KRLFVTNLRTG 84 (115)
Q Consensus 74 ~~~~~~~~~~~ 84 (115)
.....+.+..+
T Consensus 81 ~~~~~~~~~~~ 91 (391)
T PRK08020 81 RRLETWEWETA 91 (391)
T ss_pred ceEEEEeCCCC
Confidence 55666554443
No 37
>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=99.56 E-value=4.1e-14 Score=98.11 Aligned_cols=76 Identities=24% Similarity=0.332 Sum_probs=61.6
Q ss_pred cccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCCC--C---C-cceeeeeCccHHHHHHHcCChHHHhcc-cCCcceEE
Q 047339 5 EKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGL--R---G-TGAAINFAPNAWLALDALGVSHKLASI-YDPVKRLF 77 (115)
Q Consensus 5 ~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~~--~---~-~~~~~~~~~~~~~~l~~~g~~~~i~~~-~~~~~~~~ 77 (115)
.+||+||||||+|+++|+.|++.|++|+|+|+.+.. . . ..++..++++++++|+++|+++.+... ..++....
T Consensus 3 ~~dv~IvGgG~aGl~~A~~L~~~G~~v~l~E~~~~~~~~~~~~~~~r~~~l~~~~~~~L~~lG~~~~~~~~~~~~~~~~~ 82 (384)
T PRK08849 3 KYDIAVVGGGMVGAATALGFAKQGRSVAVIEGGEPKAFEPSQPMDIRVSAISQTSVDLLESLGAWSSIVAMRVCPYKRLE 82 (384)
T ss_pred cccEEEECcCHHHHHHHHHHHhCCCcEEEEcCCCcccCCCCCCCCccEEEecHHHHHHHHHCCCchhhhHhhCCccceEE
Confidence 379999999999999999999999999999987521 1 1 225568999999999999999988763 45666666
Q ss_pred EEE
Q 047339 78 VTN 80 (115)
Q Consensus 78 ~~~ 80 (115)
+++
T Consensus 83 ~~~ 85 (384)
T PRK08849 83 TWE 85 (384)
T ss_pred EEe
Confidence 655
No 38
>PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=99.56 E-value=3.1e-14 Score=98.68 Aligned_cols=77 Identities=34% Similarity=0.480 Sum_probs=63.8
Q ss_pred ccccEEEECCCHHHHHHHHHHHHC---CCceEEEcCCC-C----CCCcceeeeeCccHHHHHHHcCChHHHhcccCCcce
Q 047339 4 VEKDVVIIGAGIAGLATALALKRL---GIKPLVLEKSD-G----LRGTGAAINFAPNAWLALDALGVSHKLASIYDPVKR 75 (115)
Q Consensus 4 ~~~~v~IvG~G~~Gl~~A~~l~~~---g~~v~viE~~~-~----~~~~~~~~~~~~~~~~~l~~~g~~~~i~~~~~~~~~ 75 (115)
+++||+||||||+|+++|+.|+++ |++|+|+|+.. . +...++++.+.+++.+.|+.+|+++.+.+...+...
T Consensus 2 ~~~dv~IvGaG~aGl~~A~~L~~~~~~G~~v~v~E~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~~~~~~ 81 (395)
T PRK05732 2 SRMDVIIVGGGMAGATLALALSRLSHGGLPVALIEAFAPESDAHPGFDARAIALAAGTCQQLARLGVWQALADCATPITH 81 (395)
T ss_pred CcCCEEEECcCHHHHHHHHHhhhcccCCCEEEEEeCCCcccccCCCCCccceeccHHHHHHHHHCCChhhhHhhcCCccE
Confidence 457999999999999999999998 99999999953 2 122356888999999999999999999887777666
Q ss_pred EEEEE
Q 047339 76 LFVTN 80 (115)
Q Consensus 76 ~~~~~ 80 (115)
..+.+
T Consensus 82 ~~~~~ 86 (395)
T PRK05732 82 IHVSD 86 (395)
T ss_pred EEEec
Confidence 65554
No 39
>PRK07236 hypothetical protein; Provisional
Probab=99.55 E-value=4.1e-14 Score=98.12 Aligned_cols=81 Identities=32% Similarity=0.430 Sum_probs=64.7
Q ss_pred ccccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCCC-CCcceeeeeCccHHHHHHHcCChHHHhcccCCcceEEEEECC
Q 047339 4 VEKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGL-RGTGAAINFAPNAWLALDALGVSHKLASIYDPVKRLFVTNLR 82 (115)
Q Consensus 4 ~~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~~-~~~~~~~~~~~~~~~~l~~~g~~~~i~~~~~~~~~~~~~~~~ 82 (115)
++++|+|||||++||++|+.|++.|++|+|+|+.+.. ...+.++.+.+++.++|+.+|+.+.. ....+.....+++ .
T Consensus 5 ~~~~ViIVGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~g~gi~l~~~~~~~l~~lg~~~~~-~~~~~~~~~~~~~-~ 82 (386)
T PRK07236 5 SGPRAVVIGGSLGGLFAALLLRRAGWDVDVFERSPTELDGRGAGIVLQPELLRALAEAGVALPA-DIGVPSRERIYLD-R 82 (386)
T ss_pred CCCeEEEECCCHHHHHHHHHHHhCCCCEEEEecCCCCcCCCCceeEeCHHHHHHHHHcCCCccc-ccccCccceEEEe-C
Confidence 4689999999999999999999999999999998753 34567888999999999999997665 4455555555555 3
Q ss_pred CCee
Q 047339 83 TGAT 86 (115)
Q Consensus 83 ~~~~ 86 (115)
+++.
T Consensus 83 ~g~~ 86 (386)
T PRK07236 83 DGRV 86 (386)
T ss_pred CCCE
Confidence 3443
No 40
>PRK07608 ubiquinone biosynthesis hydroxylase family protein; Provisional
Probab=99.55 E-value=4.9e-14 Score=97.53 Aligned_cols=80 Identities=28% Similarity=0.394 Sum_probs=65.1
Q ss_pred CccccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCCCCC-----cceeeeeCccHHHHHHHcCChHHHhcc-cCCcceE
Q 047339 3 TVEKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGLRG-----TGAAINFAPNAWLALDALGVSHKLASI-YDPVKRL 76 (115)
Q Consensus 3 ~~~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~~~~-----~~~~~~~~~~~~~~l~~~g~~~~i~~~-~~~~~~~ 76 (115)
.|++||+||||||+|+++|+.|++.|++|+|+|+.+.+.. ..+.+.+.++++++|+.+|+++.+... ..+....
T Consensus 3 ~~~~dv~IvGgG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~~r~~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~~ 82 (388)
T PRK07608 3 HMKFDVVVVGGGLVGASLALALAQSGLRVALLAPRAPPRPADDAWDSRVYAISPSSQAFLERLGVWQALDAARLAPVYDM 82 (388)
T ss_pred CccCCEEEECcCHHHHHHHHHHHhCCCeEEEEecCCCccccCCCCCCceEeecHHHHHHHHHcCchhhhhhhcCCcceEE
Confidence 3678999999999999999999999999999999877543 234578999999999999999887543 3456666
Q ss_pred EEEECC
Q 047339 77 FVTNLR 82 (115)
Q Consensus 77 ~~~~~~ 82 (115)
.++...
T Consensus 83 ~~~~~~ 88 (388)
T PRK07608 83 RVFGDA 88 (388)
T ss_pred EEEECC
Confidence 666543
No 41
>PRK06996 hypothetical protein; Provisional
Probab=99.52 E-value=2.6e-13 Score=94.50 Aligned_cols=77 Identities=25% Similarity=0.361 Sum_probs=63.0
Q ss_pred CCCccccEEEECCCHHHHHHHHHHHHCC----CceEEEcCCCCC--CCcceeeeeCccHHHHHHHcCChHHHhcccCCcc
Q 047339 1 METVEKDVVIIGAGIAGLATALALKRLG----IKPLVLEKSDGL--RGTGAAINFAPNAWLALDALGVSHKLASIYDPVK 74 (115)
Q Consensus 1 m~~~~~~v~IvG~G~~Gl~~A~~l~~~g----~~v~viE~~~~~--~~~~~~~~~~~~~~~~l~~~g~~~~i~~~~~~~~ 74 (115)
|.++.+||+||||||+|+++|+.|+++| ++|+|+|+.+.. ....+++.+++++.++|+.+|+++. ...++.
T Consensus 7 ~~~~~~dv~IvGgGpaG~~~A~~L~~~g~~~g~~v~l~e~~~~~~~~~~~r~~~l~~~~~~~L~~lg~~~~---~~~~~~ 83 (398)
T PRK06996 7 MAAPDFDIAIVGAGPVGLALAGWLARRSATRALSIALIDAREPAASANDPRAIALSHGSRVLLETLGAWPA---DATPIE 83 (398)
T ss_pred ccCCCCCEEEECcCHHHHHHHHHHhcCCCcCCceEEEecCCCCCcCCCCceEEEecHHHHHHHHhCCCchh---cCCccc
Confidence 5567899999999999999999999987 469999997543 2355789999999999999999876 345566
Q ss_pred eEEEEE
Q 047339 75 RLFVTN 80 (115)
Q Consensus 75 ~~~~~~ 80 (115)
...+++
T Consensus 84 ~~~~~~ 89 (398)
T PRK06996 84 HIHVSQ 89 (398)
T ss_pred EEEEec
Confidence 666654
No 42
>PRK06834 hypothetical protein; Provisional
Probab=99.52 E-value=2.6e-13 Score=96.84 Aligned_cols=68 Identities=24% Similarity=0.282 Sum_probs=59.5
Q ss_pred cccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCCCC-CcceeeeeCccHHHHHHHcCChHHHhcccCC
Q 047339 5 EKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGLR-GTGAAINFAPNAWLALDALGVSHKLASIYDP 72 (115)
Q Consensus 5 ~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~~~-~~~~~~~~~~~~~~~l~~~g~~~~i~~~~~~ 72 (115)
++||+||||||+|+++|+.|+++|++|+|+|+.+.+. ...++..++++++++|+.+|+.+.+.+....
T Consensus 3 ~~dVlIVGaGp~Gl~lA~~La~~G~~v~vlEr~~~~~~~~~Ra~~l~~~s~~~L~~lGl~~~l~~~~~~ 71 (488)
T PRK06834 3 EHAVVIAGGGPTGLMLAGELALAGVDVAIVERRPNQELVGSRAGGLHARTLEVLDQRGIADRFLAQGQV 71 (488)
T ss_pred cceEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCCCcceeeECHHHHHHHHHcCcHHHHHhcCCc
Confidence 4799999999999999999999999999999987654 3457788999999999999999998875544
No 43
>KOG1298 consensus Squalene monooxygenase [Lipid transport and metabolism]
Probab=99.49 E-value=2e-13 Score=93.36 Aligned_cols=107 Identities=27% Similarity=0.356 Sum_probs=83.0
Q ss_pred CCccccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCCCCCcceeeeeCccHHHHHHHcCChHHHhccc-CCcceEEEEE
Q 047339 2 ETVEKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGLRGTGAAINFAPNAWLALDALGVSHKLASIY-DPVKRLFVTN 80 (115)
Q Consensus 2 ~~~~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~i~~~~-~~~~~~~~~~ 80 (115)
.+...||+|||+|.+|.++|+.|++.|.+|+|+||.-.-..+--|.-+.|.+...|.++|+.|-++... ++..++.++.
T Consensus 42 ~~~~~DvIIVGAGV~GsaLa~~L~kdGRrVhVIERDl~EPdRivGEllQPGG~~~L~~LGl~Dcve~IDAQ~v~Gy~ifk 121 (509)
T KOG1298|consen 42 NDGAADVIIVGAGVAGSALAYALAKDGRRVHVIERDLSEPDRIVGELLQPGGYLALSKLGLEDCVEGIDAQRVTGYAIFK 121 (509)
T ss_pred cCCcccEEEECCcchHHHHHHHHhhCCcEEEEEecccccchHHHHHhcCcchhHHHHHhCHHHHhhcccceEeeeeEEEe
Confidence 345789999999999999999999999999999997765456667788999999999999999998865 4556777776
Q ss_pred CCCCeeEEeecCCC--CCCCCCccccchhHHH
Q 047339 81 LRTGATQETSLAGK--SENGSGSQIHTSQKVT 110 (115)
Q Consensus 81 ~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~ 110 (115)
+|+...+||+.. .....|..+|.+.-|+
T Consensus 122 --~gk~v~~pyP~~~f~~d~~GrsFhnGRFvq 151 (509)
T KOG1298|consen 122 --DGKEVDLPYPLKNFPSDPSGRSFHNGRFVQ 151 (509)
T ss_pred --CCceeeccCCCcCCCCCcccceeeccHHHH
Confidence 566666776633 2334466566665444
No 44
>TIGR03219 salicylate_mono salicylate 1-monooxygenase. Members of this protein family are salicylate 1-monooxygenase, also called salicylate hydroxylase. This enzyme converts salicylate to catechol, which is a common intermediate in the degradation of a number of aromatic compounds (phenol, toluene, benzoate, etc.). The gene for this protein may occur in catechol degradation genes, such as those of the meta-cleavage pathway.
Probab=99.49 E-value=1.3e-13 Score=96.35 Aligned_cols=64 Identities=33% Similarity=0.509 Sum_probs=58.5
Q ss_pred cEEEECCCHHHHHHHHHHHHCC-CceEEEcCCCCCCCcceeeeeCccHHHHHHHcCChHHHhccc
Q 047339 7 DVVIIGAGIAGLATALALKRLG-IKPLVLEKSDGLRGTGAAINFAPNAWLALDALGVSHKLASIY 70 (115)
Q Consensus 7 ~v~IvG~G~~Gl~~A~~l~~~g-~~v~viE~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~i~~~~ 70 (115)
+|+|||||++||++|+.|+++| ++|+|||+.+.....+.++.+.++++++|+.+|+.+.+....
T Consensus 2 ~V~IiGgGiaGla~A~~L~~~g~~~v~v~Er~~~~~~~G~gi~l~~~~~~~L~~lg~~~~~~~~~ 66 (414)
T TIGR03219 2 RVAIIGGGIAGVALALNLCKHSHLNVQLFEAAPAFGEVGAGVSFGANAVRAIVGLGLGEAYTQVA 66 (414)
T ss_pred eEEEECCCHHHHHHHHHHHhcCCCCEEEEecCCcCCCCccceeeCccHHHHHHHcCChhHHHHHh
Confidence 7999999999999999999998 699999999888778889999999999999999988776544
No 45
>COG1635 THI4 Ribulose 1,5-bisphosphate synthetase, converts PRPP to RuBP, flavoprotein [Carbohydrate transport and metabolism]
Probab=99.42 E-value=4.2e-13 Score=85.78 Aligned_cols=59 Identities=34% Similarity=0.477 Sum_probs=49.8
Q ss_pred cccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCCCCCcce-------eeeeCccHHHHHHHcCCh
Q 047339 5 EKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGLRGTGA-------AINFAPNAWLALDALGVS 63 (115)
Q Consensus 5 ~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~~~~~~~-------~~~~~~~~~~~l~~~g~~ 63 (115)
..||+|||+||+||++|++|+++|.+|+|+|++..+++..+ .+.+..++.++|+.+|+.
T Consensus 30 esDViIVGaGPsGLtAAyyLAk~g~kV~i~E~~ls~GGG~w~GGmlf~~iVv~~~a~~iL~e~gI~ 95 (262)
T COG1635 30 ESDVIIVGAGPSGLTAAYYLAKAGLKVAIFERKLSFGGGIWGGGMLFNKIVVREEADEILDEFGIR 95 (262)
T ss_pred hccEEEECcCcchHHHHHHHHhCCceEEEEEeecccCCcccccccccceeeecchHHHHHHHhCCc
Confidence 56999999999999999999999999999999887754322 245667788999999875
No 46
>PLN00093 geranylgeranyl diphosphate reductase; Provisional
Probab=99.41 E-value=2.1e-12 Score=91.36 Aligned_cols=74 Identities=16% Similarity=0.258 Sum_probs=53.9
Q ss_pred CCCccccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCCCCCcceeeeeCccHHHHHHHcCChHHHhcccCCcceEEEEE
Q 047339 1 METVEKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGLRGTGAAINFAPNAWLALDALGVSHKLASIYDPVKRLFVTN 80 (115)
Q Consensus 1 m~~~~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~i~~~~~~~~~~~~~~ 80 (115)
|+.+++||+||||||+|+++|+.|+++|++|+|+|+.... ...++..+. .+.++.+++++.+.. .+++...++.
T Consensus 35 ~~~~~~DViIVGaGPAG~~aA~~LA~~G~~VlllEr~~~~-~k~cgg~i~---~~~l~~lgl~~~~~~--~~i~~~~~~~ 108 (450)
T PLN00093 35 LSGRKLRVAVIGGGPAGACAAETLAKGGIETFLIERKLDN-AKPCGGAIP---LCMVGEFDLPLDIID--RKVTKMKMIS 108 (450)
T ss_pred cCCCCCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCC-CCCcccccc---HhHHhhhcCcHHHHH--HHhhhheEec
Confidence 5667899999999999999999999999999999997542 233444443 356778888765543 2333445543
No 47
>PF01946 Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K.
Probab=99.39 E-value=7.5e-13 Score=84.60 Aligned_cols=60 Identities=38% Similarity=0.484 Sum_probs=45.1
Q ss_pred ccccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCCCCCcc-e------eeeeCccHHHHHHHcCCh
Q 047339 4 VEKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGLRGTG-A------AINFAPNAWLALDALGVS 63 (115)
Q Consensus 4 ~~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~~~~~~-~------~~~~~~~~~~~l~~~g~~ 63 (115)
.++||+|||+||+||++|++|+++|++|.|+|++..+++.. . .+.+..++..+|+.+|+.
T Consensus 16 ~~~DV~IVGaGpaGl~aA~~La~~g~kV~v~E~~~~~GGg~~~Gg~lf~~iVVq~~a~~iL~elgi~ 82 (230)
T PF01946_consen 16 LEYDVAIVGAGPAGLTAAYYLAKAGLKVAVIERKLSPGGGMWGGGMLFNKIVVQEEADEILDELGIP 82 (230)
T ss_dssp TEESEEEE--SHHHHHHHHHHHHHTS-EEEEESSSS-BTTTTS-CTT---EEEETTTHHHHHHHT--
T ss_pred ccCCEEEECCChhHHHHHHHHHHCCCeEEEEecCCCCCccccccccccchhhhhhhHHHHHHhCCce
Confidence 46899999999999999999999999999999988775422 2 245667788999999875
No 48
>PLN02927 antheraxanthin epoxidase/zeaxanthin epoxidase
Probab=99.37 E-value=8.3e-12 Score=91.52 Aligned_cols=69 Identities=33% Similarity=0.475 Sum_probs=55.7
Q ss_pred CccccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCCC-CCc---ceeeeeCccHHHHHHHcCC--hHHHhcccC
Q 047339 3 TVEKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGL-RGT---GAAINFAPNAWLALDALGV--SHKLASIYD 71 (115)
Q Consensus 3 ~~~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~~-~~~---~~~~~~~~~~~~~l~~~g~--~~~i~~~~~ 71 (115)
..+.+|+|||||++||++|+.|+++|++|+|||+.+.. ... ..++.+.++++++|+.+|+ .+.+...+.
T Consensus 79 ~~~~~VlIVGgGIaGLalAlaL~r~Gi~V~V~Er~~~~~r~~G~~~~~I~L~pngl~aLe~LGl~~~e~l~~~g~ 153 (668)
T PLN02927 79 KKKSRVLVAGGGIGGLVFALAAKKKGFDVLVFEKDLSAIRGEGKYRGPIQIQSNALAALEAIDIDVAEQVMEAGC 153 (668)
T ss_pred cCCCCEEEECCCHHHHHHHHHHHhcCCeEEEEeccccccccccccCcccccCHHHHHHHHHcCcchHHHHHhhcC
Confidence 35689999999999999999999999999999997632 222 2568899999999999985 455555443
No 49
>PRK11445 putative oxidoreductase; Provisional
Probab=99.35 E-value=2.2e-12 Score=88.65 Aligned_cols=57 Identities=30% Similarity=0.329 Sum_probs=50.2
Q ss_pred ccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCCCC----CcceeeeeCccHHHHHHHcCCh
Q 047339 6 KDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGLR----GTGAAINFAPNAWLALDALGVS 63 (115)
Q Consensus 6 ~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~~~----~~~~~~~~~~~~~~~l~~~g~~ 63 (115)
+||+||||||+|+++|+.|++. ++|+|+|+.+... ...++..+++++.+.|+++|++
T Consensus 2 ~dV~IvGaGpaGl~~A~~La~~-~~V~liE~~~~~~~~~~~~~~g~~l~~~~~~~L~~lgl~ 62 (351)
T PRK11445 2 YDVAIIGLGPAGSALARLLAGK-MKVIAIDKKHQCGTEGFSKPCGGLLAPDAQKSFAKDGLT 62 (351)
T ss_pred ceEEEECCCHHHHHHHHHHhcc-CCEEEEECCCccccccccCcCcCccCHHHHHHHHHcCCC
Confidence 7999999999999999999999 9999999987542 2346778999999999999985
No 50
>COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion]
Probab=99.33 E-value=2.9e-12 Score=89.39 Aligned_cols=55 Identities=38% Similarity=0.488 Sum_probs=45.6
Q ss_pred CccccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCCCCCccee-eeeCccHHHHH
Q 047339 3 TVEKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGLRGTGAA-INFAPNAWLAL 57 (115)
Q Consensus 3 ~~~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~~~~~~~~-~~~~~~~~~~l 57 (115)
++++||+||||||+|+++|+.|++.|++|+|+|+.+.++....+ ..+.+...+.+
T Consensus 1 ~~~~DVvIVGaGPAGs~aA~~la~~G~~VlvlEk~~~~G~k~~~~~~~~~~~l~~l 56 (396)
T COG0644 1 MMEYDVVIVGAGPAGSSAARRLAKAGLDVLVLEKGSEPGAKPCCGGGLSPRALEEL 56 (396)
T ss_pred CceeeEEEECCchHHHHHHHHHHHcCCeEEEEecCCCCCCCccccceechhhHHHh
Confidence 36799999999999999999999999999999999988765555 55666554444
No 51
>TIGR02023 BchP-ChlP geranylgeranyl reductase. This model represents a group of geranylgeranyl reductases specific for the biosyntheses of bacteriochlorophyll and chlorophyll. It is unclear whether the processes of isoprenoid ligation to the chlorin ring and reduction of the geranylgeranyl chain to a phytyl chain are necessarily ordered the same way in all species (see introduction to ).
Probab=99.30 E-value=3.4e-11 Score=83.76 Aligned_cols=69 Identities=23% Similarity=0.392 Sum_probs=50.5
Q ss_pred ccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCCCCCcceeeeeCccHHHHHHHcCChHHHhcccCCcceEEEEE
Q 047339 6 KDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGLRGTGAAINFAPNAWLALDALGVSHKLASIYDPVKRLFVTN 80 (115)
Q Consensus 6 ~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~i~~~~~~~~~~~~~~ 80 (115)
+||+||||||+|+++|+.|++.|++|+|+|+... ....++..+++ +.++.+++.+.+.. .+.....++.
T Consensus 1 yDVvIVGaGpAG~~aA~~La~~G~~V~l~E~~~~-~~~~cg~~i~~---~~l~~l~i~~~~~~--~~~~~~~~~~ 69 (388)
T TIGR02023 1 YDVAVIGGGPSGATAAETLARAGIETILLERALS-NIKPCGGAIPP---CLIEEFDIPDSLID--RRVTQMRMIS 69 (388)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCcEEEEECCCC-CcCcCcCCcCH---hhhhhcCCchHHHh--hhcceeEEEc
Confidence 6999999999999999999999999999999721 12234444544 46778888766544 2445566654
No 52
>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional
Probab=99.29 E-value=8.1e-12 Score=82.68 Aligned_cols=61 Identities=34% Similarity=0.449 Sum_probs=46.0
Q ss_pred CccccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCCCCCcce--e-----eeeCccHHHHHHHcCCh
Q 047339 3 TVEKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGLRGTGA--A-----INFAPNAWLALDALGVS 63 (115)
Q Consensus 3 ~~~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~~~~~~~--~-----~~~~~~~~~~l~~~g~~ 63 (115)
..++||+||||||+|+++|+.|++.|++|+|+|++..+++... + ..+.+...++|+.+|+.
T Consensus 23 ~~~~DVvIVGgGpAGl~AA~~la~~G~~V~liEk~~~~Ggg~~~gg~~~~~~~v~~~~~~~l~~~gv~ 90 (257)
T PRK04176 23 YLEVDVAIVGAGPSGLTAAYYLAKAGLKVAVFERKLSFGGGMWGGGMLFNKIVVQEEADEILDEFGIR 90 (257)
T ss_pred hccCCEEEECccHHHHHHHHHHHhCCCeEEEEecCCCCCCccccCccccccccchHHHHHHHHHCCCC
Confidence 4578999999999999999999999999999999877643211 1 22334456677776653
No 53
>PRK10157 putative oxidoreductase FixC; Provisional
Probab=99.28 E-value=1.1e-11 Score=87.37 Aligned_cols=42 Identities=38% Similarity=0.570 Sum_probs=38.6
Q ss_pred CCCccccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCCCCC
Q 047339 1 METVEKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGLRG 42 (115)
Q Consensus 1 m~~~~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~~~~ 42 (115)
|+..++||+||||||+|+++|+.|+++|++|+|+|+.+.++.
T Consensus 1 m~~~~~DViIVGaGpAG~~aA~~La~~G~~V~llEr~~~~g~ 42 (428)
T PRK10157 1 MSEDIFDAIIVGAGLAGSVAALVLAREGAQVLVIERGNSAGA 42 (428)
T ss_pred CCcccCcEEEECcCHHHHHHHHHHHhCCCeEEEEEcCCCCCC
Confidence 666789999999999999999999999999999999887654
No 54
>TIGR02032 GG-red-SF geranylgeranyl reductase family. This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates.
Probab=99.28 E-value=7.4e-12 Score=83.39 Aligned_cols=56 Identities=34% Similarity=0.388 Sum_probs=47.6
Q ss_pred ccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCCCCCcceeeeeCccHHHHHHHcC
Q 047339 6 KDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGLRGTGAAINFAPNAWLALDALG 61 (115)
Q Consensus 6 ~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~~~~~~~~~~~~~~~~~~l~~~g 61 (115)
+||+||||||+|+++|+.|++.|++|+|+|+...+....++..+.++..+.+...+
T Consensus 1 ~dv~IiGaG~aGl~~A~~l~~~g~~v~vie~~~~~~~~~~~~~~~~~~~~~l~~~~ 56 (295)
T TIGR02032 1 YDVVVVGAGPAGASAAYRLADKGLRVLLLEKKSFPRYKPCGGALSPRVLEELDLPL 56 (295)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCeEEEEeccCCCCcccccCccCHhHHHHhcCCc
Confidence 59999999999999999999999999999999876655666777777777766554
No 55
>PRK10015 oxidoreductase; Provisional
Probab=99.28 E-value=1.1e-11 Score=87.37 Aligned_cols=42 Identities=36% Similarity=0.621 Sum_probs=38.4
Q ss_pred CCCccccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCCCCC
Q 047339 1 METVEKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGLRG 42 (115)
Q Consensus 1 m~~~~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~~~~ 42 (115)
|+..++||+||||||+|+++|+.|++.|++|+|+|+.+.++.
T Consensus 1 m~~~~~DViIVGgGpAG~~aA~~LA~~G~~VlliEr~~~~g~ 42 (429)
T PRK10015 1 MSDDKFDAIVVGAGVAGSVAALVMARAGLDVLVIERGDSAGC 42 (429)
T ss_pred CCccccCEEEECcCHHHHHHHHHHHhCCCeEEEEecCCCCCc
Confidence 666779999999999999999999999999999999887654
No 56
>TIGR00292 thiazole biosynthesis enzyme. This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis.
Probab=99.23 E-value=2.8e-11 Score=80.00 Aligned_cols=60 Identities=38% Similarity=0.532 Sum_probs=45.8
Q ss_pred ccccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCCCCCccee-------eeeCccHHHHHHHcCCh
Q 047339 4 VEKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGLRGTGAA-------INFAPNAWLALDALGVS 63 (115)
Q Consensus 4 ~~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~~~~~~~~-------~~~~~~~~~~l~~~g~~ 63 (115)
.++||+||||||+||++|+.|+++|++|+|+||+..+++..++ ..+.....++++.+|+.
T Consensus 20 ~~~DVvIVGgGpAGL~aA~~la~~G~~V~vlEk~~~~Ggg~~~gg~~~~~~~~~~~~~~~l~~~gi~ 86 (254)
T TIGR00292 20 AESDVIIVGAGPSGLTAAYYLAKNGLKVCVLERSLAFGGGSWGGGMLFSKIVVEKPAHEILDEFGIR 86 (254)
T ss_pred cCCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCccccCCCcceecccccchHHHHHHHCCCC
Confidence 5789999999999999999999999999999999876432211 12233456677777654
No 57
>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G ....
Probab=99.23 E-value=3.1e-11 Score=64.53 Aligned_cols=38 Identities=47% Similarity=0.713 Sum_probs=32.9
Q ss_pred EECCCHHHHHHHHHHHHCCCceEEEcCCCCCCCcceee
Q 047339 10 IIGAGIAGLATALALKRLGIKPLVLEKSDGLRGTGAAI 47 (115)
Q Consensus 10 IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~~~~~~~~~ 47 (115)
|||||++||++|+.|+++|++|+|+|+.+.+++.....
T Consensus 1 IiGaG~sGl~aA~~L~~~g~~v~v~E~~~~~GG~~~~~ 38 (68)
T PF13450_consen 1 IIGAGISGLAAAYYLAKAGYRVTVFEKNDRLGGRARSF 38 (68)
T ss_dssp EES-SHHHHHHHHHHHHTTSEEEEEESSSSSSGGGCEE
T ss_pred CEeeCHHHHHHHHHHHHCCCcEEEEecCcccCcceeEE
Confidence 89999999999999999999999999999887655443
No 58
>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed
Probab=99.21 E-value=6.9e-11 Score=88.38 Aligned_cols=73 Identities=25% Similarity=0.293 Sum_probs=57.2
Q ss_pred cEEEECCCHHHHHHHHHHHHC--CCceEEEcCCCCCCCcceeeeeCccHHHHHHHcC--ChHHHhcccCCcceEEEE
Q 047339 7 DVVIIGAGIAGLATALALKRL--GIKPLVLEKSDGLRGTGAAINFAPNAWLALDALG--VSHKLASIYDPVKRLFVT 79 (115)
Q Consensus 7 ~v~IvG~G~~Gl~~A~~l~~~--g~~v~viE~~~~~~~~~~~~~~~~~~~~~l~~~g--~~~~i~~~~~~~~~~~~~ 79 (115)
+|+||||||+||++|+.|+++ |++|+|+|+++.....+.++.+++++.+.|+.++ +...+...........++
T Consensus 2 ~V~IIGaGpAGLaaAi~L~~~~~G~~V~vlEr~~~~~~~G~Gi~ls~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~ 78 (765)
T PRK08255 2 RIVCIGGGPAGLYFALLMKLLDPAHEVTVVERNRPYDTFGWGVVFSDATLGNLRAADPVSAAAIGDAFNHWDDIDVH 78 (765)
T ss_pred eEEEECCCHHHHHHHHHHHHhCCCCeEEEEecCCCCcccCcceEccHHHHHHHHhcCHHHHHHHHHhcccCCceEEE
Confidence 799999999999999999998 8999999998876667788999999999998877 233343333333344444
No 59
>TIGR02028 ChlP geranylgeranyl reductase. This model represents the reductase which acts reduces the geranylgeranyl group to the phytyl group in the side chain of chlorophyll. It is unclear whether the enzyme has a preference for acting before or after the attachment of the side chain to chlorophyllide a by chlorophyll synthase. This clade is restricted to plants and cyanobacteria to separate it from the homologues which act in the biosynthesis of bacteriochlorophyll.
Probab=99.21 E-value=1.5e-10 Score=80.88 Aligned_cols=68 Identities=19% Similarity=0.324 Sum_probs=49.0
Q ss_pred ccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCCCCCcceeeeeCccHHHHHHHcCChHHHhcccCCcceEEEE
Q 047339 6 KDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGLRGTGAAINFAPNAWLALDALGVSHKLASIYDPVKRLFVT 79 (115)
Q Consensus 6 ~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~i~~~~~~~~~~~~~ 79 (115)
+||+||||||+|+++|+.|+++|++|+|+|+.+... ..++..+. .+.++.+|+++.+.. ..++...++
T Consensus 1 ~~VvIVGaGPAG~~aA~~la~~G~~V~llE~~~~~~-~~cg~~i~---~~~l~~~g~~~~~~~--~~i~~~~~~ 68 (398)
T TIGR02028 1 LRVAVVGGGPAGASAAETLASAGIQTFLLERKPDNA-KPCGGAIP---LCMVDEFALPRDIID--RRVTKMKMI 68 (398)
T ss_pred CeEEEECCcHHHHHHHHHHHhCCCcEEEEecCCCCC-CCcccccc---HhhHhhccCchhHHH--hhhceeEEe
Confidence 489999999999999999999999999999976533 33333343 356788888765443 233344444
No 60
>COG2081 Predicted flavoproteins [General function prediction only]
Probab=99.15 E-value=1.2e-10 Score=80.14 Aligned_cols=58 Identities=26% Similarity=0.294 Sum_probs=43.7
Q ss_pred ccccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCCCCC-------cceeeeeCccHHHHHHHcC
Q 047339 4 VEKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGLRG-------TGAAINFAPNAWLALDALG 61 (115)
Q Consensus 4 ~~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~~~~-------~~~~~~~~~~~~~~l~~~g 61 (115)
+.+||+||||||+|+++|..++++|++|+|+|+++.++. ..++++.....-+++.+.+
T Consensus 2 ~~~dviIIGgGpAGlMaA~~aa~~G~~V~lid~~~k~GrKil~sGgGrCN~Tn~~~~~~~ls~~p 66 (408)
T COG2081 2 ERFDVIIIGGGPAGLMAAISAAKAGRRVLLIDKGPKLGRKILMSGGGRCNFTNSEAPDEFLSRNP 66 (408)
T ss_pred CcceEEEECCCHHHHHHHHHHhhcCCEEEEEecCccccceeEecCCCCccccccccHHHHHHhCC
Confidence 457999999999999999999999999999999987642 2334444433444554443
No 61
>TIGR00562 proto_IX_ox protoporphyrinogen oxidase. This protein is a flavoprotein and has a beta-alpha-beta dinucleotide binding motif near the amino end.
Probab=99.14 E-value=2.4e-10 Score=80.90 Aligned_cols=61 Identities=34% Similarity=0.467 Sum_probs=48.2
Q ss_pred ccEEEECCCHHHHHHHHHHHHC----CCceEEEcCCCCCCCcceee---------------eeCccHHHHHHHcCChHHH
Q 047339 6 KDVVIIGAGIAGLATALALKRL----GIKPLVLEKSDGLRGTGAAI---------------NFAPNAWLALDALGVSHKL 66 (115)
Q Consensus 6 ~~v~IvG~G~~Gl~~A~~l~~~----g~~v~viE~~~~~~~~~~~~---------------~~~~~~~~~l~~~g~~~~i 66 (115)
+||+|||||++||++|+.|+++ |++|+|+|+.+.+++...+. ...++..++++.+|+.+.+
T Consensus 3 ~~v~VIGaGiaGL~aA~~L~~~~~~~g~~v~vlE~~~r~GG~~~t~~~~g~~~e~G~~~~~~~~~~~~~l~~~lgl~~~~ 82 (462)
T TIGR00562 3 KHVVIIGGGISGLCAAYYLEKEIPELPVELTLVEASDRVGGKIQTVKEDGYLIERGPDSFLERKKSAPDLVKDLGLEHVL 82 (462)
T ss_pred ceEEEECCCHHHHHHHHHHHhcCCCCCCcEEEEEcCCcCcceEEEEeeCCEEEecCccccccCChHHHHHHHHcCCCccc
Confidence 6899999999999999999998 99999999998876543321 1124477888888886554
No 62
>COG1233 Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.13 E-value=1.1e-10 Score=83.38 Aligned_cols=42 Identities=50% Similarity=0.690 Sum_probs=37.7
Q ss_pred ccccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCCCCCcce
Q 047339 4 VEKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGLRGTGA 45 (115)
Q Consensus 4 ~~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~~~~~~~ 45 (115)
+.+|++|||||+.||++|..|+++|++|+|+||+..+++...
T Consensus 2 ~~~dvvVIGaG~~GL~aAa~LA~~G~~V~VlE~~~~~GG~a~ 43 (487)
T COG1233 2 PMYDVVVIGAGLNGLAAAALLARAGLKVTVLEKNDRVGGRAR 43 (487)
T ss_pred CCccEEEECCChhHHHHHHHHHhCCCEEEEEEecCCCCcceE
Confidence 357999999999999999999999999999999998876443
No 63
>PRK11883 protoporphyrinogen oxidase; Reviewed
Probab=99.11 E-value=1.9e-10 Score=81.08 Aligned_cols=60 Identities=37% Similarity=0.531 Sum_probs=46.2
Q ss_pred ccEEEECCCHHHHHHHHHHHHCC--CceEEEcCCCCCCCcceeee---------------eCccHHHHHHHcCChHH
Q 047339 6 KDVVIIGAGIAGLATALALKRLG--IKPLVLEKSDGLRGTGAAIN---------------FAPNAWLALDALGVSHK 65 (115)
Q Consensus 6 ~~v~IvG~G~~Gl~~A~~l~~~g--~~v~viE~~~~~~~~~~~~~---------------~~~~~~~~l~~~g~~~~ 65 (115)
++|+|||||++||++|+.|+++| ++|+|+|+++.+++...+.. -.++..++++.+|+.+.
T Consensus 1 ~~v~IVGaGiaGL~aA~~L~~~G~~~~V~vlEa~~~~GGr~~t~~~~g~~~d~G~~~~~~~~~~~~~l~~~lgl~~~ 77 (451)
T PRK11883 1 KKVAIIGGGITGLSAAYRLHKKGPDADITLLEASDRLGGKIQTVRKDGFPIELGPESFLARKPSAPALVKELGLEDE 77 (451)
T ss_pred CeEEEECCCHHHHHHHHHHHHhCCCCCEEEEEcCCCCcceEEEEeeCCeEEecChHHhcCCcHHHHHHHHHcCCccc
Confidence 37999999999999999999988 89999999988765433211 12345678888887644
No 64
>PRK07233 hypothetical protein; Provisional
Probab=99.10 E-value=2.3e-10 Score=80.11 Aligned_cols=59 Identities=37% Similarity=0.537 Sum_probs=45.9
Q ss_pred cEEEECCCHHHHHHHHHHHHCCCceEEEcCCCCCCCcceeee---------------eCccHHHHHHHcCChHH
Q 047339 7 DVVIIGAGIAGLATALALKRLGIKPLVLEKSDGLRGTGAAIN---------------FAPNAWLALDALGVSHK 65 (115)
Q Consensus 7 ~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~~~~~~~~~~---------------~~~~~~~~l~~~g~~~~ 65 (115)
+|+|||||++||++|+.|+++|++|+|+|+.+.+++...+.. ..++..++++.+|+.+.
T Consensus 1 ~vvVIGaGiaGL~aA~~L~~~G~~v~vlE~~~~~GG~~~s~~~~g~~~d~g~~~~~~~~~~~~~l~~~lg~~~~ 74 (434)
T PRK07233 1 KIAIVGGGIAGLAAAYRLAKRGHEVTVFEADDQLGGLAASFEFGGLPIERFYHHIFKSDEALLELLDELGLEDK 74 (434)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCcEEEEEeCCCCCCceeeeccCCcchhhhhhhhccccHHHHHHHHHcCCCCc
Confidence 589999999999999999999999999999998866443221 12345677777776544
No 65
>PF04820 Trp_halogenase: Tryptophan halogenase; InterPro: IPR006905 Tryptophan halogenase catalyses the chlorination of tryptophan to form 7-chlorotryptophan. This is the first step in the biosynthesis of pyrrolnitrin, an antibiotic with broad-spectrum anti-fungal activity. Tryptophan halogenase is NADH-dependent [].; PDB: 2PYX_B 2OAL_B 2E4G_A 2OAM_A 2OA1_B 2O9Z_A 3I3L_A 2AQJ_A 2ARD_A 2JKC_A ....
Probab=99.08 E-value=2.8e-10 Score=80.81 Aligned_cols=85 Identities=26% Similarity=0.329 Sum_probs=58.3
Q ss_pred cEEEECCCHHHHHHHHHHHHCC---CceEEEcCCCCCCCcceeeeeCccHHHHHHHcCChHH--HhcccCC-cceEEEEE
Q 047339 7 DVVIIGAGIAGLATALALKRLG---IKPLVLEKSDGLRGTGAAINFAPNAWLALDALGVSHK--LASIYDP-VKRLFVTN 80 (115)
Q Consensus 7 ~v~IvG~G~~Gl~~A~~l~~~g---~~v~viE~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~--i~~~~~~-~~~~~~~~ 80 (115)
||+|||||++|.++|..|++.+ ++|+|+|+...+ ..+.|....|....+++.+|+.+. +.+.... ..+..|.+
T Consensus 1 ~v~IvGgG~aG~~~A~~L~~~~~~~~~v~lie~~~~~-~~~vGe~~~p~~~~~~~~lgi~e~~~~~~~~~~~k~g~~f~~ 79 (454)
T PF04820_consen 1 DVVIVGGGTAGWMAAAALARAGPDALSVTLIESPDIP-RIGVGESTLPSLRPFLRRLGIDEADFMRACDATFKLGIRFVN 79 (454)
T ss_dssp EEEEE--SHHHHHHHHHHHHHCTCSSEEEEEE-SSS----SSEEE--THHHHCHHHHT--HHHHCHHCT-EEESEEEEES
T ss_pred CEEEECCCHHHHHHHHHHHHhCCCCcEEEEEecCCCC-CCCccccchHHHHHHHHHcCCChHHHHHHhCCeEeccEEeee
Confidence 6999999999999999999988 899999987665 355566778888889999999866 6555444 34677766
Q ss_pred CCC-CeeEEeecC
Q 047339 81 LRT-GATQETSLA 92 (115)
Q Consensus 81 ~~~-~~~~~~~~~ 92 (115)
+.. +.....||.
T Consensus 80 w~~~~~~~~~~f~ 92 (454)
T PF04820_consen 80 WGERGESYFHPFG 92 (454)
T ss_dssp SSSCCSEEEEESS
T ss_pred cCCCCCceEeecc
Confidence 654 344677775
No 66
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=99.08 E-value=2.5e-10 Score=81.00 Aligned_cols=46 Identities=30% Similarity=0.499 Sum_probs=39.6
Q ss_pred CCCccccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCCCCCccee
Q 047339 1 METVEKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGLRGTGAA 46 (115)
Q Consensus 1 m~~~~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~~~~~~~~ 46 (115)
|.+.++||+||||||+|+.+|+.|++.|.+|+|+|+.+..++....
T Consensus 1 ~~~~~yDvvVIGaGpaG~~aA~~la~~G~~v~liE~~~~~GG~~~~ 46 (461)
T PRK05249 1 MHMYDYDLVVIGSGPAGEGAAMQAAKLGKRVAVIERYRNVGGGCTH 46 (461)
T ss_pred CCCccccEEEECCCHHHHHHHHHHHhCCCEEEEEeccccccccccc
Confidence 6666899999999999999999999999999999997666554433
No 67
>COG1232 HemY Protoporphyrinogen oxidase [Coenzyme metabolism]
Probab=99.07 E-value=1.3e-09 Score=76.93 Aligned_cols=62 Identities=29% Similarity=0.440 Sum_probs=50.6
Q ss_pred cEEEECCCHHHHHHHHHHHHCC--CceEEEcCCCCCCCccee--------------eee-CccHHHHHHHcCChHHHhc
Q 047339 7 DVVIIGAGIAGLATALALKRLG--IKPLVLEKSDGLRGTGAA--------------INF-APNAWLALDALGVSHKLAS 68 (115)
Q Consensus 7 ~v~IvG~G~~Gl~~A~~l~~~g--~~v~viE~~~~~~~~~~~--------------~~~-~~~~~~~l~~~g~~~~i~~ 68 (115)
+|+|||||++||++|+.|++++ ++++|+|+.+..++..++ +.. .+...+.++.+|+.+.+..
T Consensus 2 ~i~IiG~GiaGLsaAy~L~k~~p~~~i~lfE~~~r~GG~l~T~~~~G~~~e~G~~~f~~~~~~~l~li~eLGled~l~~ 80 (444)
T COG1232 2 KIAIIGGGIAGLSAAYRLQKAGPDVEVTLFEADDRVGGLLRTVKIDGFLFERGPHHFLARKEEILDLIKELGLEDKLLW 80 (444)
T ss_pred eEEEECCcHHHHHHHHHHHHhCCCCcEEEEecCCCCCceEEEEeeCCEEEeechhheecchHHHHHHHHHhCcHHhhcc
Confidence 7999999999999999999999 999999999877653322 112 2567788999999988873
No 68
>PRK07208 hypothetical protein; Provisional
Probab=99.07 E-value=3.3e-10 Score=80.69 Aligned_cols=42 Identities=45% Similarity=0.544 Sum_probs=37.7
Q ss_pred CccccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCCCCCcc
Q 047339 3 TVEKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGLRGTG 44 (115)
Q Consensus 3 ~~~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~~~~~~ 44 (115)
+.+.||+|||||++||++|+.|+++|++|+|+|+.+..++..
T Consensus 2 ~~~~~vvIiGaGisGL~aA~~L~~~g~~v~v~E~~~~~GG~~ 43 (479)
T PRK07208 2 TNKKSVVIIGAGPAGLTAAYELLKRGYPVTVLEADPVVGGIS 43 (479)
T ss_pred CCCCcEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCcee
Confidence 556899999999999999999999999999999998876543
No 69
>PF03486 HI0933_like: HI0933-like protein; InterPro: IPR004792 This is a family of conserved hypothetical proteins that may include proteins with a dinucleotide-binding motif (Rossman fold), including oxidoreductases and dehydrogenases.; PDB: 2I0Z_A 3V76_A 2GQF_A.
Probab=99.07 E-value=2.1e-10 Score=80.39 Aligned_cols=36 Identities=42% Similarity=0.658 Sum_probs=28.1
Q ss_pred ccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCCCC
Q 047339 6 KDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGLR 41 (115)
Q Consensus 6 ~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~~~ 41 (115)
|||+||||||+||++|+.+++.|.+|+|+|+++.++
T Consensus 1 ydviIIGgGaAGl~aA~~aa~~g~~V~vlE~~~~~g 36 (409)
T PF03486_consen 1 YDVIIIGGGAAGLMAAITAAEKGARVLVLERNKRVG 36 (409)
T ss_dssp -SEEEE--SHHHHHHHHHHHHTT--EEEE-SSSSS-
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCCEEEEeCCcccc
Confidence 699999999999999999999999999999998763
No 70
>TIGR02731 phytoene_desat phytoene desaturase. Plants and cyanobacteria (and, supposedly, Chlorobium tepidum) have a conserved pathway from two molecules geranylgeranyl-PP to one of all-trans-lycopene. Members of this family are the enzyme pytoene desaturase (also called phytoene dehydrogenase). This model does not include the region of the chloroplast transit peptide in plants. A closely related family, excluded by this model, is zeta-carotene desaturase, another enzyme in the same pathway.
Probab=99.06 E-value=5.8e-10 Score=78.97 Aligned_cols=60 Identities=42% Similarity=0.556 Sum_probs=48.2
Q ss_pred cEEEECCCHHHHHHHHHHHHCCCceEEEcCCCCCCCccee----------------eeeCccHHHHHHHcCChHHH
Q 047339 7 DVVIIGAGIAGLATALALKRLGIKPLVLEKSDGLRGTGAA----------------INFAPNAWLALDALGVSHKL 66 (115)
Q Consensus 7 ~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~~~~~~~~----------------~~~~~~~~~~l~~~g~~~~i 66 (115)
+|+|||||++||++|+.|+++|++|+|+|+.+.+++...+ ....++..++++.+|+.+.+
T Consensus 1 ~v~IiGaG~aGl~aA~~L~~~G~~v~vlE~~~~~GG~~~s~~~~~g~~~d~G~~~~~~~~~~~~~l~~~lg~~~~~ 76 (453)
T TIGR02731 1 RVAIAGAGLAGLSCAKYLADAGHTPIVLEARDVLGGKVAAWKDEDGDWYETGLHIFFGAYPNMLQLLKELNIEDRL 76 (453)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCCcceeECCCCCEEEcCcceeccCCchHHHHHHHcCCccce
Confidence 5899999999999999999999999999998876553221 12247788999999986543
No 71
>PLN02661 Putative thiazole synthesis
Probab=99.02 E-value=9.8e-10 Score=75.37 Aligned_cols=61 Identities=38% Similarity=0.503 Sum_probs=45.6
Q ss_pred CccccEEEECCCHHHHHHHHHHHHC-CCceEEEcCCCCCCCcce-e------eeeCccHHHHHHHcCCh
Q 047339 3 TVEKDVVIIGAGIAGLATALALKRL-GIKPLVLEKSDGLRGTGA-A------INFAPNAWLALDALGVS 63 (115)
Q Consensus 3 ~~~~~v~IvG~G~~Gl~~A~~l~~~-g~~v~viE~~~~~~~~~~-~------~~~~~~~~~~l~~~g~~ 63 (115)
..++||+|||+|++|+++|+.|++. |++|+|+|+...+++..+ + ..+.....++|+++|+.
T Consensus 90 ~~~~DVlIVGaG~AGl~AA~~La~~~g~kV~viEk~~~~GGG~~~gg~l~~~~vv~~~a~e~LeElGV~ 158 (357)
T PLN02661 90 YADTDVVIVGAGSAGLSCAYELSKNPNVKVAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHLFLDELGVP 158 (357)
T ss_pred cccCCEEEECCHHHHHHHHHHHHHcCCCeEEEEecCcccccceeeCcccccccccccHHHHHHHHcCCC
Confidence 3578999999999999999999986 899999999877643211 1 12223356778888874
No 72
>PRK13369 glycerol-3-phosphate dehydrogenase; Provisional
Probab=99.01 E-value=8.1e-10 Score=79.31 Aligned_cols=57 Identities=25% Similarity=0.290 Sum_probs=42.8
Q ss_pred CccccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCCCC-CcceeeeeCccHHHHHHH
Q 047339 3 TVEKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGLR-GTGAAINFAPNAWLALDA 59 (115)
Q Consensus 3 ~~~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~~~-~~~~~~~~~~~~~~~l~~ 59 (115)
+.++||+|||||++|+.+|+.|+++|++|+|+|+.+... .++++..+-..+.++++.
T Consensus 4 ~~~~DVvIIGGGi~G~~~A~~la~rG~~V~LlEk~d~~~GtS~~ss~lihgg~ryl~~ 61 (502)
T PRK13369 4 PETYDLFVIGGGINGAGIARDAAGRGLKVLLCEKDDLAQGTSSRSGKLVHGGLRYLEY 61 (502)
T ss_pred CcccCEEEECCCHHHHHHHHHHHhCCCcEEEEECCCCCCCCchhhhhhHHHHHHHHHh
Confidence 456899999999999999999999999999999986543 334444343444445443
No 73
>COG3349 Uncharacterized conserved protein [Function unknown]
Probab=99.01 E-value=6.3e-10 Score=78.68 Aligned_cols=59 Identities=34% Similarity=0.402 Sum_probs=47.3
Q ss_pred ccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCCCCCccee----------------eeeCccHHHHHHHcCChH
Q 047339 6 KDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGLRGTGAA----------------INFAPNAWLALDALGVSH 64 (115)
Q Consensus 6 ~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~~~~~~~~----------------~~~~~~~~~~l~~~g~~~ 64 (115)
++|+|+|||++||++|+.|+.+|++|+|+|+++..++...+ .....+..+.|.+++..+
T Consensus 1 ~rVai~GaG~AgL~~a~~La~~g~~vt~~ea~~~~GGk~~s~~~~dg~~~E~glh~f~~~Y~n~~~ll~~~~~~~ 75 (485)
T COG3349 1 MRVAIAGAGLAGLAAAYELADAGYDVTLYEARDRLGGKVASWRDSDGNHVEHGLHVFFGCYYNLLTLLKELPIED 75 (485)
T ss_pred CeEEEEcccHHHHHHHHHHHhCCCceEEEeccCccCceeeeeecCCCCeeeeeeEEechhHHHHHHHhhhCCchh
Confidence 37999999999999999999999999999999988764432 233456677777777653
No 74
>PRK05335 tRNA (uracil-5-)-methyltransferase Gid; Reviewed
Probab=99.00 E-value=1.2e-09 Score=76.57 Aligned_cols=64 Identities=22% Similarity=0.240 Sum_probs=45.3
Q ss_pred cccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCCCCCcc--------eeeeeCccHHHHHHHcCChH-HHhc
Q 047339 5 EKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGLRGTG--------AAINFAPNAWLALDALGVSH-KLAS 68 (115)
Q Consensus 5 ~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~~~~~~--------~~~~~~~~~~~~l~~~g~~~-~i~~ 68 (115)
..||+|||||++|+.+|+.|++.|++|+|+|+.+...... +....+..+...+...|++. .+..
T Consensus 2 ~~dVvVIGGGlAGleAAlaLAr~Gl~V~LiE~rp~~~s~a~~~~~~~ervca~Slgs~~ll~a~Gll~~em~~ 74 (436)
T PRK05335 2 MKPVNVIGAGLAGSEAAWQLAKRGVPVELYEMRPVKKTPAHHTDGFAELVCSNSFRSDSLTNAVGLLKEEMRR 74 (436)
T ss_pred CCcEEEECCCHHHHHHHHHHHhCCCcEEEEEccCccCcccccCccccccccchhhhhhhHHhcCCchHHHHHH
Confidence 4699999999999999999999999999999876542210 11223333455677777764 4443
No 75
>PRK12416 protoporphyrinogen oxidase; Provisional
Probab=98.99 E-value=9.8e-10 Score=78.00 Aligned_cols=61 Identities=28% Similarity=0.482 Sum_probs=46.6
Q ss_pred ccEEEECCCHHHHHHHHHHHHC------CCceEEEcCCCCCCCcceee---------------eeCccHHHHHHHcCChH
Q 047339 6 KDVVIIGAGIAGLATALALKRL------GIKPLVLEKSDGLRGTGAAI---------------NFAPNAWLALDALGVSH 64 (115)
Q Consensus 6 ~~v~IvG~G~~Gl~~A~~l~~~------g~~v~viE~~~~~~~~~~~~---------------~~~~~~~~~l~~~g~~~ 64 (115)
++|+|||||++||++|+.|++. |++|+|+|+++.+++..++. ...++..++++++|+.+
T Consensus 2 ~~v~VIGaGisGL~aA~~L~~~~~~~~~~~~V~vlEa~~r~GGr~~T~~~~g~~~e~G~~~i~~~~~~~~~l~~~lgl~~ 81 (463)
T PRK12416 2 KTVVVIGGGITGLSTMFYLEKLKKDYNIDLNLILVEKEEYLGGKIHSVEEKDFIMESGADSIVARNEHVMPLVKDLNLEE 81 (463)
T ss_pred CeEEEECCCHHHHHHHHHHHhhhhccCCCccEEEEecCCCccceEEEEeeCCEEEecCcHHHhcCCHHHHHHHHHcCCcc
Confidence 4799999999999999999986 38999999999886644321 11344567888888765
Q ss_pred HH
Q 047339 65 KL 66 (115)
Q Consensus 65 ~i 66 (115)
.+
T Consensus 82 ~~ 83 (463)
T PRK12416 82 EM 83 (463)
T ss_pred ce
Confidence 53
No 76
>PRK07843 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=98.99 E-value=2.3e-09 Score=77.93 Aligned_cols=65 Identities=29% Similarity=0.394 Sum_probs=47.0
Q ss_pred CCCccccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCCCCCcc-ee-eeeCccHHHHHHHcCChHH
Q 047339 1 METVEKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGLRGTG-AA-INFAPNAWLALDALGVSHK 65 (115)
Q Consensus 1 m~~~~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~~~~~~-~~-~~~~~~~~~~l~~~g~~~~ 65 (115)
|.+.++||+|||+|++|+++|+.++++|.+|+|+|+.+..++.. .+ ..++....++++..|+.+.
T Consensus 3 ~~~~~~DvvVvG~G~aG~~aA~~aa~~G~~v~llEk~~~~gG~~~~~~g~~~~~~~~~~~~~g~~~~ 69 (557)
T PRK07843 3 MTVQEYDVVVVGSGAAGMVAALTAAHRGLSTVVVEKAPHYGGSTARSGGGVWIPNNEVLKRAGVPDT 69 (557)
T ss_pred CCCCcCCEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCCCCccccccCceeecCCHHHHHHCCCHHH
Confidence 56778999999999999999999999999999999987654311 11 1122223456666666543
No 77
>PLN02576 protoporphyrinogen oxidase
Probab=98.98 E-value=1.4e-09 Score=77.85 Aligned_cols=42 Identities=43% Similarity=0.650 Sum_probs=37.4
Q ss_pred ccccEEEECCCHHHHHHHHHHHHC-CCceEEEcCCCCCCCcce
Q 047339 4 VEKDVVIIGAGIAGLATALALKRL-GIKPLVLEKSDGLRGTGA 45 (115)
Q Consensus 4 ~~~~v~IvG~G~~Gl~~A~~l~~~-g~~v~viE~~~~~~~~~~ 45 (115)
.++||+|||||++||++|+.|+++ |++|+|+|+.+.+++...
T Consensus 11 ~~~~v~IIGaGisGL~aA~~L~~~~g~~v~vlEa~~rvGGr~~ 53 (496)
T PLN02576 11 SSKDVAVVGAGVSGLAAAYALASKHGVNVLVTEARDRVGGNIT 53 (496)
T ss_pred CCCCEEEECcCHHHHHHHHHHHHhcCCCEEEEecCCCCCCcee
Confidence 457999999999999999999999 999999999988766543
No 78
>PRK11259 solA N-methyltryptophan oxidase; Provisional
Probab=98.97 E-value=8.8e-10 Score=76.08 Aligned_cols=36 Identities=33% Similarity=0.488 Sum_probs=33.6
Q ss_pred ccccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCC
Q 047339 4 VEKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDG 39 (115)
Q Consensus 4 ~~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~ 39 (115)
+++||+|||||++|+++|+.|+++|++|+|+|+...
T Consensus 2 ~~~dv~IIGgGi~G~s~A~~L~~~g~~V~lie~~~~ 37 (376)
T PRK11259 2 MRYDVIVIGLGSMGSAAGYYLARRGLRVLGLDRFMP 37 (376)
T ss_pred CcccEEEECCCHHHHHHHHHHHHCCCeEEEEecccC
Confidence 468999999999999999999999999999998764
No 79
>PRK12266 glpD glycerol-3-phosphate dehydrogenase; Reviewed
Probab=98.97 E-value=1.8e-09 Score=77.67 Aligned_cols=56 Identities=23% Similarity=0.310 Sum_probs=42.8
Q ss_pred ccccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCCCC-CcceeeeeCccHHHHHHH
Q 047339 4 VEKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGLR-GTGAAINFAPNAWLALDA 59 (115)
Q Consensus 4 ~~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~~~-~~~~~~~~~~~~~~~l~~ 59 (115)
..+||+|||||++|+.+|+.|+++|++|+|+|+++... .++++..+-..+.+++..
T Consensus 5 ~~~DVvIIGGGi~G~~~A~~la~rGl~V~LvEk~d~~~GtS~~ss~lihgG~ryl~~ 61 (508)
T PRK12266 5 ETYDLLVIGGGINGAGIARDAAGRGLSVLLCEQDDLASATSSASTKLIHGGLRYLEH 61 (508)
T ss_pred CcCCEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCCCCccccccccccchHHHhhh
Confidence 35899999999999999999999999999999986543 344544444455455443
No 80
>KOG0029 consensus Amine oxidase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.97 E-value=1.4e-09 Score=77.84 Aligned_cols=41 Identities=44% Similarity=0.712 Sum_probs=37.2
Q ss_pred CccccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCCCCCc
Q 047339 3 TVEKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGLRGT 43 (115)
Q Consensus 3 ~~~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~~~~~ 43 (115)
..+++|+|||||++||++|..|...|++|+|+|..+.++++
T Consensus 13 ~~~~~VIVIGAGiaGLsAArqL~~~G~~V~VLEARdRvGGR 53 (501)
T KOG0029|consen 13 GKKKKVIVIGAGLAGLSAARQLQDFGFDVLVLEARDRVGGR 53 (501)
T ss_pred cCCCcEEEECCcHHHHHHHHHHHHcCCceEEEeccCCcCce
Confidence 34679999999999999999999999999999999887654
No 81
>PLN02463 lycopene beta cyclase
Probab=98.97 E-value=1.5e-09 Score=76.92 Aligned_cols=61 Identities=25% Similarity=0.256 Sum_probs=43.8
Q ss_pred ccccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCCCCCcceeeeeCccHHHHHHHcCChHHHhc
Q 047339 4 VEKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGLRGTGAAINFAPNAWLALDALGVSHKLAS 68 (115)
Q Consensus 4 ~~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~i~~ 68 (115)
..+||+||||||+|+++|..|+++|++|.|+|+.+... ...+...+ .+.++.+|+.+.+..
T Consensus 27 ~~~DVvIVGaGpAGLalA~~La~~Gl~V~liE~~~~~~-~p~~~g~w---~~~l~~lgl~~~l~~ 87 (447)
T PLN02463 27 RVVDLVVVGGGPAGLAVAQQVSEAGLSVCCIDPSPLSI-WPNNYGVW---VDEFEALGLLDCLDT 87 (447)
T ss_pred cCceEEEECCCHHHHHHHHHHHHCCCeEEEeccCccch-hccccchH---HHHHHHCCcHHHHHh
Confidence 35799999999999999999999999999999875421 11111111 345677777665543
No 82
>PRK06115 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.97 E-value=1e-09 Score=78.13 Aligned_cols=43 Identities=37% Similarity=0.533 Sum_probs=36.6
Q ss_pred cccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCCCCCcceee
Q 047339 5 EKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGLRGTGAAI 47 (115)
Q Consensus 5 ~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~~~~~~~~~ 47 (115)
++||+|||+||+|+.+|..+++.|.+|+|+|++...++.+...
T Consensus 3 ~~DvvVIG~GpaG~~AA~~aa~~G~~V~liE~~~~~GG~c~~~ 45 (466)
T PRK06115 3 SYDVVIIGGGPGGYNAAIRAGQLGLKVACVEGRSTLGGTCLNV 45 (466)
T ss_pred cccEEEECCCHHHHHHHHHHHhCCCeEEEEecCCceeeeeccC
Confidence 4899999999999999999999999999999865555554333
No 83
>TIGR02733 desat_CrtD C-3',4' desaturase CrtD. Members of this family are slr1293, a carotenoid biosynthesis protein which was shown to be the C-3',4' desaturase (CrtD) of myxoxanthophyll biosynthesis in Synechocystis sp. strain PCC 6803, and close homologs (presumed to be functionally equivalent) from other cyanobacteria, where myxoxanthophyll biosynthesis is either known or expected. This enzyme can act on neurosporene and so presumably catalyzes the first step that is committed to myxoxanthophyll.
Probab=98.96 E-value=1.4e-09 Score=77.81 Aligned_cols=37 Identities=43% Similarity=0.636 Sum_probs=34.8
Q ss_pred ccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCCCCC
Q 047339 6 KDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGLRG 42 (115)
Q Consensus 6 ~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~~~~ 42 (115)
.||+|||||++||++|..|+++|++|+|+|+++.+++
T Consensus 2 ~dvvIIGaG~~GL~aa~~La~~G~~v~vlE~~~~~GG 38 (492)
T TIGR02733 2 TSVVVIGAGIAGLTAAALLAKRGYRVTLLEQHAQPGG 38 (492)
T ss_pred CeEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCCCC
Confidence 6899999999999999999999999999999988765
No 84
>TIGR02732 zeta_caro_desat carotene 7,8-desaturase. Carotene 7,8-desaturase, also called zeta-carotene desaturase, catalyzes multiple steps in the pathway from geranylgeranyl-PP to all-trans-lycopene in plants and cyanobacteria. A similar enzyme and pathway is found in the green sulfur bacterium Chlorobium tepidum.
Probab=98.95 E-value=2.1e-09 Score=76.71 Aligned_cols=61 Identities=28% Similarity=0.405 Sum_probs=48.4
Q ss_pred cEEEECCCHHHHHHHHHHHHCCCceEEEcCCCCCCCcceee----------------eeCccHHHHHHHcCChHHHh
Q 047339 7 DVVIIGAGIAGLATALALKRLGIKPLVLEKSDGLRGTGAAI----------------NFAPNAWLALDALGVSHKLA 67 (115)
Q Consensus 7 ~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~~~~~~~~~----------------~~~~~~~~~l~~~g~~~~i~ 67 (115)
+|+|||||++|+++|+.|+++|++|+|+|+.+..++...+. ...++..++++++|+.+.+.
T Consensus 1 ~v~IiG~G~aGl~aA~~L~~~G~~v~v~E~~~~~GG~~~~~~~~~g~~~d~G~~~~~~~~~~~~~~~~~lg~~~~~~ 77 (474)
T TIGR02732 1 KVAIVGAGLAGLSTAVELVDAGHEVDIYESRSFIGGKVGSWVDGDGNHIEMGLHVFFGCYANLFRLMKKVGAEDNLL 77 (474)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCcEEEEEecCCCCceeeeeecCCCceEeeceEEecCchHHHHHHHHHcCCccccc
Confidence 58999999999999999999999999999988775432221 12455778899999876654
No 85
>PRK14694 putative mercuric reductase; Provisional
Probab=98.95 E-value=1.7e-09 Score=77.01 Aligned_cols=38 Identities=24% Similarity=0.429 Sum_probs=35.4
Q ss_pred CCCccccEEEECCCHHHHHHHHHHHHCCCceEEEcCCC
Q 047339 1 METVEKDVVIIGAGIAGLATALALKRLGIKPLVLEKSD 38 (115)
Q Consensus 1 m~~~~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~ 38 (115)
|+..++|++||||||+|+.+|..|++.|.+|+|+|+..
T Consensus 2 ~~~~~~dviVIGaG~aG~~aA~~l~~~g~~v~lie~~~ 39 (468)
T PRK14694 2 MSDNNLHIAVIGSGGSAMAAALKATERGARVTLIERGT 39 (468)
T ss_pred CCCCcCCEEEECCCHHHHHHHHHHHhCCCcEEEEEccc
Confidence 56788999999999999999999999999999999863
No 86
>PLN02612 phytoene desaturase
Probab=98.95 E-value=3.4e-09 Score=77.13 Aligned_cols=63 Identities=43% Similarity=0.562 Sum_probs=50.4
Q ss_pred ccccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCCCCCccee----------------eeeCccHHHHHHHcCChHHH
Q 047339 4 VEKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGLRGTGAA----------------INFAPNAWLALDALGVSHKL 66 (115)
Q Consensus 4 ~~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~~~~~~~~----------------~~~~~~~~~~l~~~g~~~~i 66 (115)
.+.+|+|||+|++||++|+.|+++|++|+|+|+.+..++...+ ....++..++++++|+.+.+
T Consensus 92 ~~~~v~iiG~G~~Gl~~a~~l~~~g~~~~~~e~~~~~gG~~~s~~~~~G~~~D~G~h~~~g~~~~~~~ll~elG~~~~~ 170 (567)
T PLN02612 92 KPLKVVIAGAGLAGLSTAKYLADAGHKPILLEARDVLGGKVAAWKDEDGDWYETGLHIFFGAYPNVQNLFGELGINDRL 170 (567)
T ss_pred CCCCEEEECCCHHHHHHHHHHHhcCCeEEEEecCCCCCCcceeeEcCCCCEEcCCceEEeCCCchHHHHHHHhCCcccc
Confidence 4578999999999999999999999999999998765443221 12356788899999987654
No 87
>PRK06370 mercuric reductase; Validated
Probab=98.94 E-value=2e-09 Score=76.56 Aligned_cols=37 Identities=32% Similarity=0.451 Sum_probs=33.7
Q ss_pred CCccccEEEECCCHHHHHHHHHHHHCCCceEEEcCCC
Q 047339 2 ETVEKDVVIIGAGIAGLATALALKRLGIKPLVLEKSD 38 (115)
Q Consensus 2 ~~~~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~ 38 (115)
...++|++|||+||+|+.+|+.|++.|++|+|+|+..
T Consensus 2 ~~~~~DvvVIG~GpaG~~aA~~aa~~G~~v~lie~~~ 38 (463)
T PRK06370 2 PAQRYDAIVIGAGQAGPPLAARAAGLGMKVALIERGL 38 (463)
T ss_pred CCccccEEEECCCHHHHHHHHHHHhCCCeEEEEecCc
Confidence 3456999999999999999999999999999999863
No 88
>TIGR02730 carot_isom carotene isomerase. Members of this family, including sll0033 (crtH) of Synechocystis sp. PCC 6803, catalyze a cis-trans isomerization of carotenes to the all-trans lycopene, a reaction that can also occur non-enzymatically in light through photoisomerization.
Probab=98.93 E-value=2.2e-09 Score=76.85 Aligned_cols=40 Identities=43% Similarity=0.547 Sum_probs=36.2
Q ss_pred ccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCCCCCcce
Q 047339 6 KDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGLRGTGA 45 (115)
Q Consensus 6 ~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~~~~~~~ 45 (115)
+||+|||+|++||++|.+|+++|++|+|+|++..+++...
T Consensus 1 ~dvvViGaG~~Gl~aA~~La~~G~~V~vlE~~~~~GG~~~ 40 (493)
T TIGR02730 1 YDAIVIGSGIGGLVTATQLAVKGAKVLVLERYLIPGGSAG 40 (493)
T ss_pred CcEEEECCcHHHHHHHHHHHHCCCcEEEEECCCCCCCcee
Confidence 5899999999999999999999999999999998765443
No 89
>PLN02172 flavin-containing monooxygenase FMO GS-OX
Probab=98.93 E-value=2e-09 Score=76.61 Aligned_cols=40 Identities=38% Similarity=0.582 Sum_probs=36.4
Q ss_pred ccccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCCCCCc
Q 047339 4 VEKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGLRGT 43 (115)
Q Consensus 4 ~~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~~~~~ 43 (115)
.+++|+|||||++||++|..|.+.|++|+|+|+++..++.
T Consensus 9 ~~~~VaIIGAG~aGL~aA~~l~~~G~~v~vfE~~~~vGG~ 48 (461)
T PLN02172 9 NSQHVAVIGAGAAGLVAARELRREGHTVVVFEREKQVGGL 48 (461)
T ss_pred CCCCEEEECCcHHHHHHHHHHHhcCCeEEEEecCCCCcce
Confidence 3589999999999999999999999999999999887654
No 90
>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.
Probab=98.93 E-value=1.8e-09 Score=76.43 Aligned_cols=40 Identities=30% Similarity=0.442 Sum_probs=34.9
Q ss_pred cccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCCCCCcce
Q 047339 5 EKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGLRGTGA 45 (115)
Q Consensus 5 ~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~~~~~~~ 45 (115)
+||++||||||+|+.+|+.+++.|++|+|+|+. ..++.+.
T Consensus 2 ~yDvvVIG~GpaG~~aA~~aa~~G~~V~lie~~-~~GG~c~ 41 (446)
T TIGR01424 2 DYDLFVIGAGSGGVRAARLAANHGAKVAIAEEP-RVGGTCV 41 (446)
T ss_pred cccEEEECCCHHHHHHHHHHHhCCCcEEEEecC-ccCceee
Confidence 689999999999999999999999999999984 4444443
No 91
>PLN02487 zeta-carotene desaturase
Probab=98.93 E-value=3.3e-09 Score=77.12 Aligned_cols=63 Identities=27% Similarity=0.385 Sum_probs=50.5
Q ss_pred cccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCCCCCcceee----------------eeCccHHHHHHHcCChHHHh
Q 047339 5 EKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGLRGTGAAI----------------NFAPNAWLALDALGVSHKLA 67 (115)
Q Consensus 5 ~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~~~~~~~~~----------------~~~~~~~~~l~~~g~~~~i~ 67 (115)
+++|+|||+|++||++|+.|+++|++|+|+|+.+..++...+. ...++..++++++|+.+.+.
T Consensus 75 ~~~v~iiG~G~~Gl~~a~~L~~~g~~v~i~E~~~~~gG~~~s~~~~~g~~~e~G~h~~~~~~~~~~~ll~~LGl~~~~~ 153 (569)
T PLN02487 75 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRPFIGGKVGSFVDKNGNHIEMGLHVFFGCYNNLFRLMKKVGADENLL 153 (569)
T ss_pred CCeEEEECCCHHHHHHHHHHHhCCCeeEEEecCCCCCCceeeeeecCCcEEecceeEecCCcHHHHHHHHhcCCccccc
Confidence 3589999999999999999999999999999988765422111 12466889999999977654
No 92
>PRK06467 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.93 E-value=2.2e-09 Score=76.55 Aligned_cols=45 Identities=29% Similarity=0.555 Sum_probs=37.8
Q ss_pred CccccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCCCCCcceee
Q 047339 3 TVEKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGLRGTGAAI 47 (115)
Q Consensus 3 ~~~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~~~~~~~~~ 47 (115)
+.++|++||||||+|+.+|..|++.|.+|+|+|+.+..++.+.+.
T Consensus 2 ~~~~DvvVIG~GpaG~~aA~~aa~~G~~V~lie~~~~~GG~c~n~ 46 (471)
T PRK06467 2 EIKTQVVVLGAGPAGYSAAFRAADLGLETVCVERYSTLGGVCLNV 46 (471)
T ss_pred CccceEEEECCCHHHHHHHHHHHHCCCcEEEEecCCcccccccCC
Confidence 345999999999999999999999999999999876555544433
No 93
>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=98.92 E-value=2.3e-09 Score=75.80 Aligned_cols=42 Identities=33% Similarity=0.481 Sum_probs=35.8
Q ss_pred cccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCC-CCCccee
Q 047339 5 EKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDG-LRGTGAA 46 (115)
Q Consensus 5 ~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~-~~~~~~~ 46 (115)
++||+||||||+|+.+|+.|+++|++|+|+|+.+. .++.+.+
T Consensus 3 ~yDvvVIGgGpaGl~aA~~la~~g~~V~lie~~~~~~GG~~~~ 45 (441)
T PRK08010 3 KYQAVIIGFGKAGKTLAVTLAKAGWRVALIEQSNAMYGGTCIN 45 (441)
T ss_pred cCCEEEECCCHhHHHHHHHHHHCCCeEEEEcCCCCccceeEee
Confidence 58999999999999999999999999999998753 4444433
No 94
>PRK06116 glutathione reductase; Validated
Probab=98.92 E-value=1.6e-09 Score=76.79 Aligned_cols=40 Identities=33% Similarity=0.499 Sum_probs=34.6
Q ss_pred ccccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCCCCCcc
Q 047339 4 VEKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGLRGTG 44 (115)
Q Consensus 4 ~~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~~~~~~ 44 (115)
.++|++||||||+|+.+|+.|++.|++|+|+|+. ..++.+
T Consensus 3 ~~~DvvVIG~GpaG~~aA~~~a~~G~~V~liE~~-~~GG~c 42 (450)
T PRK06116 3 KDYDLIVIGGGSGGIASANRAAMYGAKVALIEAK-RLGGTC 42 (450)
T ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCeEEEEecc-chhhhh
Confidence 4689999999999999999999999999999985 344433
No 95
>PLN02268 probable polyamine oxidase
Probab=98.92 E-value=2.3e-09 Score=75.54 Aligned_cols=39 Identities=41% Similarity=0.608 Sum_probs=35.2
Q ss_pred ccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCCCCCcc
Q 047339 6 KDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGLRGTG 44 (115)
Q Consensus 6 ~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~~~~~~ 44 (115)
.+|+|||||++||++|+.|.++|++|+|+|+.+..+++.
T Consensus 1 ~~VvVIGaGisGL~aA~~L~~~g~~v~vlEa~~r~GGri 39 (435)
T PLN02268 1 PSVIVIGGGIAGIAAARALHDASFKVTLLESRDRIGGRV 39 (435)
T ss_pred CCEEEECCCHHHHHHHHHHHhCCCeEEEEeCCCCCCcee
Confidence 479999999999999999999999999999998876543
No 96
>PRK11728 hydroxyglutarate oxidase; Provisional
Probab=98.92 E-value=2e-09 Score=75.04 Aligned_cols=36 Identities=50% Similarity=0.710 Sum_probs=33.2
Q ss_pred cccEEEECCCHHHHHHHHHHHHC--CCceEEEcCCCCC
Q 047339 5 EKDVVIIGAGIAGLATALALKRL--GIKPLVLEKSDGL 40 (115)
Q Consensus 5 ~~~v~IvG~G~~Gl~~A~~l~~~--g~~v~viE~~~~~ 40 (115)
.+||+|||||++|+++|+.|+++ |++|+|+|+...+
T Consensus 2 ~~dVvIIGgGi~G~s~A~~La~~~~g~~V~llE~~~~~ 39 (393)
T PRK11728 2 MYDFVIIGGGIVGLSTAMQLQERYPGARIAVLEKESGP 39 (393)
T ss_pred CccEEEECCcHHHHHHHHHHHHhCCCCeEEEEeCCCcc
Confidence 48999999999999999999998 9999999998643
No 97
>PRK11101 glpA sn-glycerol-3-phosphate dehydrogenase subunit A; Provisional
Probab=98.91 E-value=2.7e-09 Score=77.33 Aligned_cols=39 Identities=31% Similarity=0.501 Sum_probs=35.1
Q ss_pred CCccccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCCC
Q 047339 2 ETVEKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGL 40 (115)
Q Consensus 2 ~~~~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~~ 40 (115)
++.++||+|||||++|+++|+.|+++|++|+|+|+.+..
T Consensus 3 ~~~~~DVvIIGGGi~G~~iA~~La~rG~~V~LlEk~d~~ 41 (546)
T PRK11101 3 DSQETDVIIIGGGATGAGIARDCALRGLRCILVERHDIA 41 (546)
T ss_pred CCccccEEEECcCHHHHHHHHHHHHcCCeEEEEECCCCC
Confidence 445799999999999999999999999999999997643
No 98
>PF12831 FAD_oxidored: FAD dependent oxidoreductase; PDB: 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A.
Probab=98.90 E-value=2.3e-09 Score=75.64 Aligned_cols=36 Identities=50% Similarity=0.737 Sum_probs=30.2
Q ss_pred cEEEECCCHHHHHHHHHHHHCCCceEEEcCCCCCCC
Q 047339 7 DVVIIGAGIAGLATALALKRLGIKPLVLEKSDGLRG 42 (115)
Q Consensus 7 ~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~~~~ 42 (115)
||+|||||++|+++|+.+++.|.+|+|+|+...+++
T Consensus 1 DVVVvGgG~aG~~AAi~AAr~G~~VlLiE~~~~lGG 36 (428)
T PF12831_consen 1 DVVVVGGGPAGVAAAIAAARAGAKVLLIEKGGFLGG 36 (428)
T ss_dssp EEEEE--SHHHHHHHHHHHHTTS-EEEE-SSSSSTG
T ss_pred CEEEECccHHHHHHHHHHHHCCCEEEEEECCccCCC
Confidence 799999999999999999999999999999998765
No 99
>TIGR02734 crtI_fam phytoene desaturase. Phytoene is converted to lycopene by desaturation at four (two symmetrical pairs of) sites. This is achieved by two enzymes (crtP and crtQ) in cyanobacteria (Gloeobacter being an exception) and plants, but by a single enzyme in most other bacteria and in fungi. This single enzyme is called the bacterial-type phytoene desaturase, or CrtI. Most members of this family, part of the larger Pfam family pfam01593, which also contains amino oxidases, are CrtI itself; it is likely that all members act on either phytoene or on related compounds such as dehydrosqualene, for carotenoid biosynthesis.
Probab=98.90 E-value=2.7e-09 Score=76.50 Aligned_cols=37 Identities=43% Similarity=0.631 Sum_probs=34.1
Q ss_pred EEEECCCHHHHHHHHHHHHCCCceEEEcCCCCCCCcc
Q 047339 8 VVIIGAGIAGLATALALKRLGIKPLVLEKSDGLRGTG 44 (115)
Q Consensus 8 v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~~~~~~ 44 (115)
|+|||||++||++|.+|+++|++|+|+|+++.+++..
T Consensus 1 vvVIGaG~~GL~aA~~La~~G~~V~VlE~~~~~GG~~ 37 (502)
T TIGR02734 1 AVVIGAGFGGLALAIRLAAAGIPVTVVEQRDKPGGRA 37 (502)
T ss_pred CEEECcCHHHHHHHHHHHhCCCcEEEEECCCCCcCce
Confidence 6899999999999999999999999999999886543
No 100
>PLN02464 glycerol-3-phosphate dehydrogenase
Probab=98.89 E-value=4.2e-09 Score=77.45 Aligned_cols=56 Identities=20% Similarity=0.289 Sum_probs=42.7
Q ss_pred CccccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCCC-CCcceeeeeCccHHHHHH
Q 047339 3 TVEKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGL-RGTGAAINFAPNAWLALD 58 (115)
Q Consensus 3 ~~~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~~-~~~~~~~~~~~~~~~~l~ 58 (115)
+.++||+|||||+.|+.+|+.|+++|++|+|+|+.+.. +.++++..+-+.+.++++
T Consensus 69 ~~~~DVvVIGGGi~Ga~~A~~lA~rGl~V~LvE~~d~a~GtSsrss~lihgg~ryl~ 125 (627)
T PLN02464 69 AEPLDVLVVGGGATGAGVALDAATRGLRVGLVEREDFSSGTSSRSTKLIHGGVRYLE 125 (627)
T ss_pred CCccCEEEECCCHHHHHHHHHHHhCCCEEEEEeccccCCCcccchhhhhhhHHHHHH
Confidence 34589999999999999999999999999999998654 334444444444555544
No 101
>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=98.89 E-value=3.1e-09 Score=75.06 Aligned_cols=35 Identities=34% Similarity=0.466 Sum_probs=33.1
Q ss_pred cccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCC
Q 047339 5 EKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDG 39 (115)
Q Consensus 5 ~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~ 39 (115)
++||+||||||+|+.+|..|++.|.+|+|+|+.+.
T Consensus 3 ~~dvvVIG~GpaG~~aA~~l~~~g~~V~liE~~~~ 37 (438)
T PRK07251 3 TYDLIVIGFGKAGKTLAAKLASAGKKVALVEESKA 37 (438)
T ss_pred ccCEEEECCCHHHHHHHHHHHhCCCEEEEEecCCc
Confidence 68999999999999999999999999999999764
No 102
>PRK13748 putative mercuric reductase; Provisional
Probab=98.89 E-value=2.8e-09 Score=77.33 Aligned_cols=39 Identities=31% Similarity=0.457 Sum_probs=34.6
Q ss_pred ccccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCCCCCc
Q 047339 4 VEKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGLRGT 43 (115)
Q Consensus 4 ~~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~~~~~ 43 (115)
.++|++||||||+|+.+|..|++.|.+|+|+|+. ..++.
T Consensus 97 ~~~DvvVIG~GpaG~~aA~~~~~~G~~v~lie~~-~~GG~ 135 (561)
T PRK13748 97 RPLHVAVIGSGGAAMAAALKAVEQGARVTLIERG-TIGGT 135 (561)
T ss_pred CCCCEEEECcCHHHHHHHHHHHhCCCeEEEEecC-cceee
Confidence 4699999999999999999999999999999987 44443
No 103
>PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1.1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A ....
Probab=98.89 E-value=3.4e-09 Score=72.10 Aligned_cols=34 Identities=59% Similarity=0.725 Sum_probs=31.7
Q ss_pred cEEEECCCHHHHHHHHHHHHCCCceEEEcCCCCC
Q 047339 7 DVVIIGAGIAGLATALALKRLGIKPLVLEKSDGL 40 (115)
Q Consensus 7 ~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~~ 40 (115)
||+|||||++|+++|+.|+++|++|+|+|+....
T Consensus 1 DvvIIGaGi~G~~~A~~La~~G~~V~l~e~~~~~ 34 (358)
T PF01266_consen 1 DVVIIGAGIAGLSTAYELARRGHSVTLLERGDIG 34 (358)
T ss_dssp EEEEECTSHHHHHHHHHHHHTTSEEEEEESSSTT
T ss_pred CEEEECcCHHHHHHHHHHHHCCCeEEEEeecccc
Confidence 7999999999999999999999999999999443
No 104
>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.
Probab=98.89 E-value=3.7e-09 Score=75.04 Aligned_cols=43 Identities=37% Similarity=0.580 Sum_probs=36.5
Q ss_pred cccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCCCCCcceeee
Q 047339 5 EKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGLRGTGAAIN 48 (115)
Q Consensus 5 ~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~~~~~~~~~~ 48 (115)
.+||+||||||+|+.+|..|++.|.+|+|+|+ +..++.+.+..
T Consensus 1 ~yDvvVIG~G~aGl~aA~~la~~G~~v~lie~-~~~GG~~~~~g 43 (461)
T TIGR01350 1 AYDVVVIGGGPGGYVAAIRAAQLGLKVALVEK-EYLGGTCLNVG 43 (461)
T ss_pred CccEEEECCCHHHHHHHHHHHhCCCeEEEEec-CCCCCceeecC
Confidence 38999999999999999999999999999999 55555544433
No 105
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.88 E-value=4.2e-09 Score=74.85 Aligned_cols=40 Identities=43% Similarity=0.678 Sum_probs=35.3
Q ss_pred ccccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCCCCCcc
Q 047339 4 VEKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGLRGTG 44 (115)
Q Consensus 4 ~~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~~~~~~ 44 (115)
.++|++||||||+|+.+|..|+++|++|+|+|+.. .++.+
T Consensus 3 ~~yDvvVIGaGpaG~~aA~~aa~~G~~V~liE~~~-~GG~c 42 (462)
T PRK06416 3 FEYDVIVIGAGPGGYVAAIRAAQLGLKVAIVEKEK-LGGTC 42 (462)
T ss_pred ccccEEEECCCHHHHHHHHHHHHCCCcEEEEeccc-cccce
Confidence 46899999999999999999999999999999876 44443
No 106
>PLN02568 polyamine oxidase
Probab=98.88 E-value=5.7e-09 Score=75.56 Aligned_cols=43 Identities=37% Similarity=0.512 Sum_probs=38.2
Q ss_pred CCCccccEEEECCCHHHHHHHHHHHHCC-----CceEEEcCCCCCCCc
Q 047339 1 METVEKDVVIIGAGIAGLATALALKRLG-----IKPLVLEKSDGLRGT 43 (115)
Q Consensus 1 m~~~~~~v~IvG~G~~Gl~~A~~l~~~g-----~~v~viE~~~~~~~~ 43 (115)
|.++.+||+|||||++||++|..|++.| ++|+|+|+...+++.
T Consensus 1 ~~~~~~~v~iiGaG~aGl~aa~~L~~~g~~~~~~~v~v~E~~~~~GGr 48 (539)
T PLN02568 1 MVAKKPRIVIIGAGMAGLTAANKLYTSSAANDMFELTVVEGGDRIGGR 48 (539)
T ss_pred CCCCCCcEEEECCCHHHHHHHHHHHhcccccCCceEEEEeCCCCcCCe
Confidence 5566789999999999999999999887 899999998887654
No 107
>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.
Probab=98.88 E-value=3.7e-09 Score=75.00 Aligned_cols=39 Identities=36% Similarity=0.546 Sum_probs=34.3
Q ss_pred cccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCCCCCcc
Q 047339 5 EKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGLRGTG 44 (115)
Q Consensus 5 ~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~~~~~~ 44 (115)
++||+||||||+|+.+|..|++.|.+|+|+|+.. .++.+
T Consensus 2 ~yDvvVIG~GpaG~~aA~~aa~~G~~V~liE~~~-~GG~c 40 (450)
T TIGR01421 2 HYDYLVIGGGSGGIASARRAAEHGAKALLVEAKK-LGGTC 40 (450)
T ss_pred CCCEEEECcCHHHHHHHHHHHHCCCcEEEecccc-cccce
Confidence 5899999999999999999999999999999853 44444
No 108
>COG0665 DadA Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]
Probab=98.87 E-value=4.2e-09 Score=72.89 Aligned_cols=38 Identities=42% Similarity=0.593 Sum_probs=35.1
Q ss_pred CccccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCCC
Q 047339 3 TVEKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGL 40 (115)
Q Consensus 3 ~~~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~~ 40 (115)
.+++||+|||||++|+++|++|+++|.+|+++|+....
T Consensus 2 ~~~~~vvVIGgGi~Gls~A~~La~~G~~V~vie~~~~~ 39 (387)
T COG0665 2 SMKMDVVIIGGGIVGLSAAYYLAERGADVTVLEAGEAG 39 (387)
T ss_pred CCcceEEEECCcHHHHHHHHHHHHcCCEEEEEecCccC
Confidence 56789999999999999999999999999999987754
No 109
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=98.87 E-value=4.8e-09 Score=74.81 Aligned_cols=42 Identities=40% Similarity=0.586 Sum_probs=35.9
Q ss_pred ccccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCCCCCccee
Q 047339 4 VEKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGLRGTGAA 46 (115)
Q Consensus 4 ~~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~~~~~~~~ 46 (115)
..||++||||||+|+.+|..|++.|.+|+|+|+. ..++.+..
T Consensus 3 ~~ydvvVIG~GpaG~~aA~~aa~~G~~v~lie~~-~~GG~c~~ 44 (472)
T PRK05976 3 KEYDLVIIGGGPGGYVAAIRAGQLGLKTALVEKG-KLGGTCLH 44 (472)
T ss_pred ccccEEEECCCHHHHHHHHHHHhCCCeEEEEEcc-CCCcceEc
Confidence 4589999999999999999999999999999986 44444433
No 110
>PRK06452 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.86 E-value=5.2e-09 Score=76.18 Aligned_cols=40 Identities=40% Similarity=0.573 Sum_probs=36.9
Q ss_pred CCCccccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCCC
Q 047339 1 METVEKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGL 40 (115)
Q Consensus 1 m~~~~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~~ 40 (115)
|+++++||+|||+|.+||++|+.+++.|.+|+|+||....
T Consensus 1 ~~~~~~DVvVVG~G~AGl~AAl~Aae~G~~V~lveK~~~~ 40 (566)
T PRK06452 1 MEKIEYDAVVIGGGLAGLMSAHEIASAGFKVAVISKVFPT 40 (566)
T ss_pred CCcccCcEEEECccHHHHHHHHHHHHCCCcEEEEEccCCC
Confidence 7778899999999999999999999999999999997643
No 111
>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=98.86 E-value=4.2e-09 Score=71.33 Aligned_cols=34 Identities=47% Similarity=0.664 Sum_probs=30.1
Q ss_pred ccccEEEECCCHHHHHHHHHHHHCCCc-eEEEcCC
Q 047339 4 VEKDVVIIGAGIAGLATALALKRLGIK-PLVLEKS 37 (115)
Q Consensus 4 ~~~~v~IvG~G~~Gl~~A~~l~~~g~~-v~viE~~ 37 (115)
+.+||+||||||+||++|+++++++.+ ++|+|+.
T Consensus 2 ~~~DviIIG~GPAGl~AAiya~r~~l~~~li~~~~ 36 (305)
T COG0492 2 KIYDVIIIGGGPAGLTAAIYAARAGLKVVLILEGG 36 (305)
T ss_pred ceeeEEEECCCHHHHHHHHHHHHcCCCcEEEEecC
Confidence 468999999999999999999999998 6666664
No 112
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=98.86 E-value=5.2e-09 Score=76.04 Aligned_cols=35 Identities=37% Similarity=0.602 Sum_probs=32.5
Q ss_pred ccccEEEECCCHHHHHHHHHHHHCCCceEEEcCCC
Q 047339 4 VEKDVVIIGAGIAGLATALALKRLGIKPLVLEKSD 38 (115)
Q Consensus 4 ~~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~ 38 (115)
..+||+||||||+|+.+|..|+++|++|+|+|+..
T Consensus 3 ~~yDVvIIGgGpAGL~AA~~lar~g~~V~liE~~~ 37 (555)
T TIGR03143 3 EIYDLIIIGGGPAGLSAGIYAGRAKLDTLIIEKDD 37 (555)
T ss_pred CcCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCC
Confidence 34999999999999999999999999999999864
No 113
>KOG1399 consensus Flavin-containing monooxygenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.86 E-value=4.7e-09 Score=74.25 Aligned_cols=40 Identities=48% Similarity=0.706 Sum_probs=37.0
Q ss_pred CccccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCCCCC
Q 047339 3 TVEKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGLRG 42 (115)
Q Consensus 3 ~~~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~~~~ 42 (115)
.+..+++|||||++||.+|..|.+.|++++++||.+.+++
T Consensus 4 ~~~~~vaIIGAG~sGL~~ar~l~~~g~~v~vfEr~~~iGG 43 (448)
T KOG1399|consen 4 MMSKDVAVIGAGPAGLAAARELLREGHEVVVFERTDDIGG 43 (448)
T ss_pred CCCCceEEECcchHHHHHHHHHHHCCCCceEEEecCCccc
Confidence 4578999999999999999999999999999999998764
No 114
>PRK06069 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.86 E-value=4.8e-09 Score=76.52 Aligned_cols=40 Identities=38% Similarity=0.610 Sum_probs=37.2
Q ss_pred CCCccccEEEECCCHHHHHHHHHHHHCC---CceEEEcCCCCC
Q 047339 1 METVEKDVVIIGAGIAGLATALALKRLG---IKPLVLEKSDGL 40 (115)
Q Consensus 1 m~~~~~~v~IvG~G~~Gl~~A~~l~~~g---~~v~viE~~~~~ 40 (115)
|++.++||+|||+|.+||++|+.+++.| .+|+|+||....
T Consensus 1 ~~~~~~DVlVVG~G~AGl~AA~~Aa~~G~~~~~V~lleK~~~~ 43 (577)
T PRK06069 1 MEVLKYDVVIVGSGLAGLRAAVAAAERSGGKLSVAVVSKTQPM 43 (577)
T ss_pred CCceecCEEEECccHHHHHHHHHHHHhCCCCCcEEEEEcccCC
Confidence 7888999999999999999999999998 899999998754
No 115
>COG0578 GlpA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=98.86 E-value=7.1e-09 Score=74.36 Aligned_cols=62 Identities=26% Similarity=0.319 Sum_probs=52.8
Q ss_pred CCccccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCCC-CCcceeeeeCccHHHHHHHcCCh
Q 047339 2 ETVEKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGL-RGTGAAINFAPNAWLALDALGVS 63 (115)
Q Consensus 2 ~~~~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~~-~~~~~~~~~~~~~~~~l~~~g~~ 63 (115)
.+.++|++|||||+.|+-.|.-++.+|++|.|+|+.+.. +.++++..+-+.+.++|+...+.
T Consensus 9 ~~~~~DviVIGGGitG~GiArDaA~RGl~v~LvE~~D~AsGTSsrstkLiHGGlRYl~~~e~~ 71 (532)
T COG0578 9 RMEEFDVIVIGGGITGAGIARDAAGRGLKVALVEKGDLASGTSSRSTKLIHGGLRYLEQYEFS 71 (532)
T ss_pred cccCCCEEEECCchhhHHHHHHHHhCCCeEEEEecCcccCcccCccccCccchhhhhhhcchH
Confidence 346799999999999999999999999999999998875 45677777878888888876543
No 116
>PRK06292 dihydrolipoamide dehydrogenase; Validated
Probab=98.85 E-value=5.5e-09 Score=74.20 Aligned_cols=39 Identities=44% Similarity=0.595 Sum_probs=34.0
Q ss_pred ccccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCCCCCc
Q 047339 4 VEKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGLRGT 43 (115)
Q Consensus 4 ~~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~~~~~ 43 (115)
.++|++||||||+|+.+|..|++.|.+|+|+|+ ...++.
T Consensus 2 ~~yDvvIIG~G~aGl~aA~~l~~~g~~v~lie~-~~~GG~ 40 (460)
T PRK06292 2 EKYDVIVIGAGPAGYVAARRAAKLGKKVALIEK-GPLGGT 40 (460)
T ss_pred CcccEEEECCCHHHHHHHHHHHHCCCeEEEEeC-Cccccc
Confidence 458999999999999999999999999999998 344433
No 117
>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]
Probab=98.84 E-value=6.8e-09 Score=73.60 Aligned_cols=41 Identities=49% Similarity=0.744 Sum_probs=36.9
Q ss_pred CccccEEEECCCHHHHHHHHHHHHCCCc-eEEEcCCCCCCCc
Q 047339 3 TVEKDVVIIGAGIAGLATALALKRLGIK-PLVLEKSDGLRGT 43 (115)
Q Consensus 3 ~~~~~v~IvG~G~~Gl~~A~~l~~~g~~-v~viE~~~~~~~~ 43 (115)
..++||+|||||++|+.+|+.|.++|.+ ++|+||+...++.
T Consensus 6 ~~~~~v~IIGaG~sGlaaa~~L~~~g~~~~~i~Ek~~~~Gg~ 47 (443)
T COG2072 6 ATHTDVAIIGAGQSGLAAAYALKQAGVPDFVIFEKRDDVGGT 47 (443)
T ss_pred CCcccEEEECCCHHHHHHHHHHHHcCCCcEEEEEccCCcCCc
Confidence 4568999999999999999999999999 9999999876543
No 118
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=98.84 E-value=6.6e-09 Score=57.07 Aligned_cols=55 Identities=36% Similarity=0.412 Sum_probs=41.1
Q ss_pred cEEEECCCHHHHHHHHHHHHCCCceEEEcCCCCCCCcceeeeeCccHHHHHHHcCC
Q 047339 7 DVVIIGAGIAGLATALALKRLGIKPLVLEKSDGLRGTGAAINFAPNAWLALDALGV 62 (115)
Q Consensus 7 ~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~~~~~~~~~~~~~~~~~~l~~~g~ 62 (115)
+++|||||+.|+.+|..|++.|.+|+++++.+.+. ....-.+.....+.|++.|+
T Consensus 1 ~vvViGgG~ig~E~A~~l~~~g~~vtli~~~~~~~-~~~~~~~~~~~~~~l~~~gV 55 (80)
T PF00070_consen 1 RVVVIGGGFIGIELAEALAELGKEVTLIERSDRLL-PGFDPDAAKILEEYLRKRGV 55 (80)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTSEEEEEESSSSSS-TTSSHHHHHHHHHHHHHTTE
T ss_pred CEEEECcCHHHHHHHHHHHHhCcEEEEEeccchhh-hhcCHHHHHHHHHHHHHCCC
Confidence 48999999999999999999999999999998865 33222233334455555554
No 119
>PRK12842 putative succinate dehydrogenase; Reviewed
Probab=98.84 E-value=1.1e-08 Score=74.71 Aligned_cols=41 Identities=37% Similarity=0.690 Sum_probs=36.7
Q ss_pred CCccccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCCCCC
Q 047339 2 ETVEKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGLRG 42 (115)
Q Consensus 2 ~~~~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~~~~ 42 (115)
++.++||+|||+|++|+++|+.++++|.+|+|+||....++
T Consensus 6 ~~~~~DVvVVG~G~aGl~AA~~aa~~G~~v~llEk~~~~gG 46 (574)
T PRK12842 6 NELTCDVLVIGSGAGGLSAAITARKLGLDVVVLEKEPVFGG 46 (574)
T ss_pred cCCCCCEEEECcCHHHHHHHHHHHHcCCeEEEEecCCCCCC
Confidence 35678999999999999999999999999999999876543
No 120
>TIGR01377 soxA_mon sarcosine oxidase, monomeric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=98.84 E-value=4.7e-09 Score=72.56 Aligned_cols=34 Identities=44% Similarity=0.614 Sum_probs=31.8
Q ss_pred ccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCC
Q 047339 6 KDVVIIGAGIAGLATALALKRLGIKPLVLEKSDG 39 (115)
Q Consensus 6 ~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~ 39 (115)
+||+|||||++|+++|+.|+++|.+|+|+|+...
T Consensus 1 ~dvvIIGaGi~G~s~A~~La~~g~~V~l~e~~~~ 34 (380)
T TIGR01377 1 FDVIVVGAGIMGCFAAYHLAKHGKKTLLLEQFDL 34 (380)
T ss_pred CcEEEECCCHHHHHHHHHHHHCCCeEEEEeccCC
Confidence 5899999999999999999999999999999654
No 121
>TIGR01790 carotene-cycl lycopene cyclase family protein. This family includes lycopene beta and epsilion cyclases (which form beta and delta carotene, respectively) from bacteria and plants as well as the plant capsanthin/capsorubin and neoxanthin cyclases which appear to have evolved from the plant lycopene cyclases. The plant lycopene epsilon cyclases also transform neurosporene to alpha zeacarotene.
Probab=98.84 E-value=5.7e-09 Score=72.49 Aligned_cols=34 Identities=41% Similarity=0.673 Sum_probs=31.8
Q ss_pred cEEEECCCHHHHHHHHHHHHCCCceEEEcCCCCC
Q 047339 7 DVVIIGAGIAGLATALALKRLGIKPLVLEKSDGL 40 (115)
Q Consensus 7 ~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~~ 40 (115)
||+||||||+|+++|+.|++.|++|+|+|+.+..
T Consensus 1 DviIiGaG~AGl~~A~~la~~g~~v~liE~~~~~ 34 (388)
T TIGR01790 1 DLAVIGGGPAGLAIALELARPGLRVQLIEPHPPI 34 (388)
T ss_pred CEEEECCCHHHHHHHHHHHhCCCeEEEEccCCCC
Confidence 7999999999999999999999999999988654
No 122
>PRK07803 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.83 E-value=7e-09 Score=76.32 Aligned_cols=40 Identities=40% Similarity=0.433 Sum_probs=36.0
Q ss_pred CCCccccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCCC
Q 047339 1 METVEKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGL 40 (115)
Q Consensus 1 m~~~~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~~ 40 (115)
|+++++||+|||+|.+|+++|+.+++.|.+|+|+||....
T Consensus 4 ~~~~~~DVvVIG~G~AGl~AAl~Aae~G~~V~lieK~~~~ 43 (626)
T PRK07803 4 VERHSYDVVVIGAGGAGLRAAIEARERGLRVAVVCKSLFG 43 (626)
T ss_pred ccceeecEEEECcCHHHHHHHHHHHHCCCCEEEEeccCCC
Confidence 4556789999999999999999999999999999998654
No 123
>TIGR02053 MerA mercuric reductase. This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.
Probab=98.83 E-value=8.1e-09 Score=73.43 Aligned_cols=38 Identities=39% Similarity=0.590 Sum_probs=33.6
Q ss_pred ccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCCCCCcc
Q 047339 6 KDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGLRGTG 44 (115)
Q Consensus 6 ~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~~~~~~ 44 (115)
+|++||||||+|+.+|..+++.|.+|+|+|+.. .++.+
T Consensus 1 yDvvVIGaGpaG~~aA~~aa~~g~~v~lie~~~-~GG~c 38 (463)
T TIGR02053 1 YDLVIIGSGAAAFAAAIKAAELGASVAMVERGP-LGGTC 38 (463)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCc-ccCCe
Confidence 699999999999999999999999999999865 44443
No 124
>PTZ00058 glutathione reductase; Provisional
Probab=98.83 E-value=7.2e-09 Score=75.33 Aligned_cols=40 Identities=35% Similarity=0.467 Sum_probs=35.2
Q ss_pred CccccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCCCCCc
Q 047339 3 TVEKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGLRGT 43 (115)
Q Consensus 3 ~~~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~~~~~ 43 (115)
.+++|++|||+|++|+.+|..+++.|.+|+|+|+. ..++.
T Consensus 46 ~~~yDvvVIG~G~aG~~aA~~aa~~G~~ValIEk~-~~GGt 85 (561)
T PTZ00058 46 RMVYDLIVIGGGSGGMAAARRAARNKAKVALVEKD-YLGGT 85 (561)
T ss_pred CccccEEEECcCHHHHHHHHHHHHcCCeEEEEecc-ccccc
Confidence 46899999999999999999999999999999986 34443
No 125
>PLN02697 lycopene epsilon cyclase
Probab=98.82 E-value=1.6e-08 Score=73.09 Aligned_cols=58 Identities=24% Similarity=0.302 Sum_probs=42.2
Q ss_pred ccccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCCCCCcceeeeeCccHHHHHHHcCChHHHh
Q 047339 4 VEKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGLRGTGAAINFAPNAWLALDALGVSHKLA 67 (115)
Q Consensus 4 ~~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~i~ 67 (115)
..+||+||||||+|+++|..|++.|++|+|+|+..... .+..++. ..++.+++.+.+.
T Consensus 107 ~~~DVvIVGaGPAGLalA~~Lak~Gl~V~LIe~~~p~~---~n~GvW~---~~l~~lgl~~~i~ 164 (529)
T PLN02697 107 GTLDLVVIGCGPAGLALAAESAKLGLNVGLIGPDLPFT---NNYGVWE---DEFKDLGLEDCIE 164 (529)
T ss_pred CcccEEEECcCHHHHHHHHHHHhCCCcEEEecCcccCC---Cccccch---hHHHhcCcHHHHH
Confidence 45899999999999999999999999999999753221 1222332 3466677665544
No 126
>KOG2415 consensus Electron transfer flavoprotein ubiquinone oxidoreductase [Energy production and conversion]
Probab=98.82 E-value=2.3e-08 Score=69.83 Aligned_cols=108 Identities=29% Similarity=0.347 Sum_probs=64.5
Q ss_pred ccccEEEECCCHHHHHHHHHHHHC------CCceEEEcCCCCCCCcce-eeeeCccHHHHHHHcCChHHH-hcccCCcce
Q 047339 4 VEKDVVIIGAGIAGLATALALKRL------GIKPLVLEKSDGLRGTGA-AINFAPNAWLALDALGVSHKL-ASIYDPVKR 75 (115)
Q Consensus 4 ~~~~v~IvG~G~~Gl~~A~~l~~~------g~~v~viE~~~~~~~~~~-~~~~~~~~~~~l~~~g~~~~i-~~~~~~~~~ 75 (115)
..+||+||||||+||++|+.|.+. .++|.|+|+...+++... +-.+.|.+.+.| +--|..- .....+...
T Consensus 75 e~~Dv~IVG~GPAGLsaAIrlKQla~~~~~dlrVcvvEKaa~~GghtlSGaviep~aldEL--~P~wke~~apl~t~vT~ 152 (621)
T KOG2415|consen 75 EEVDVVIVGAGPAGLSAAIRLKQLAAKANKDLRVCVVEKAAEVGGHTLSGAVIEPGALDEL--LPDWKEDGAPLNTPVTS 152 (621)
T ss_pred ccccEEEECCCchhHHHHHHHHHHHHhcCCceEEEEEeeccccCCceecceeeccchhhhh--CcchhhcCCcccccccc
Confidence 468999999999999999998873 478999999988765443 334455443332 1111111 112233333
Q ss_pred EEEEECCCCeeEEeecCCCCCCCCCccccchhHHHhhhc
Q 047339 76 LFVTNLRTGATQETSLAGKSENGSGSQIHTSQKVTRDLG 114 (115)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 114 (115)
..|..-.......+|.+ .....+|..+.....+.+-|+
T Consensus 153 d~~~fLt~~~~i~vPv~-~pm~NhGNYvv~L~~~v~wLg 190 (621)
T KOG2415|consen 153 DKFKFLTGKGRISVPVP-SPMDNHGNYVVSLGQLVRWLG 190 (621)
T ss_pred cceeeeccCceeecCCC-cccccCCcEEEEHHHHHHHHH
Confidence 33333221122444443 335677888888887777664
No 127
>PRK07818 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.82 E-value=9.4e-09 Score=73.22 Aligned_cols=40 Identities=38% Similarity=0.553 Sum_probs=34.4
Q ss_pred cccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCCCCCcce
Q 047339 5 EKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGLRGTGA 45 (115)
Q Consensus 5 ~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~~~~~~~ 45 (115)
++|++||||||+|+.+|..|++.|.+|+|+|+. ..++.+.
T Consensus 4 ~~DvvIIG~GpaG~~AA~~aa~~G~~V~lie~~-~~GG~c~ 43 (466)
T PRK07818 4 HYDVVVLGAGPGGYVAAIRAAQLGLKTAVVEKK-YWGGVCL 43 (466)
T ss_pred cCCEEEECCCHHHHHHHHHHHhCCCeEEEEecC-CCCCcee
Confidence 589999999999999999999999999999985 3334433
No 128
>TIGR00031 UDP-GALP_mutase UDP-galactopyranose mutase. The gene is known as glf, ceoA, and rfbD. It is known experimentally in E. coli, Mycobacterium tuberculosis, and Klebsiella pneumoniae.
Probab=98.82 E-value=9.5e-09 Score=71.43 Aligned_cols=38 Identities=37% Similarity=0.620 Sum_probs=34.6
Q ss_pred ccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCCCCCc
Q 047339 6 KDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGLRGT 43 (115)
Q Consensus 6 ~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~~~~~ 43 (115)
+|++|||||++|+++|..|++.|.+|+|+|+.+..++.
T Consensus 2 ~DvvIIGaG~aGlsaA~~La~~G~~V~viEk~~~iGG~ 39 (377)
T TIGR00031 2 FDYIIVGAGLSGIVLANILAQLNKRVLVVEKRNHIGGN 39 (377)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCeEEEEecCCCCCCc
Confidence 69999999999999999999999999999998766553
No 129
>PRK07057 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.82 E-value=9e-09 Score=75.30 Aligned_cols=39 Identities=38% Similarity=0.517 Sum_probs=35.3
Q ss_pred CCCccccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCC
Q 047339 1 METVEKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDG 39 (115)
Q Consensus 1 m~~~~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~ 39 (115)
|++..+||+|||+|.+||++|+.+++.|.+|+|+||...
T Consensus 8 ~~~~~~DVlVIG~G~AGl~AAi~Aa~~G~~V~vleK~~~ 46 (591)
T PRK07057 8 LPRRKFDVVIVGAGGSGMRASLQLARAGLSVAVLSKVFP 46 (591)
T ss_pred cccccCCEEEECccHHHHHHHHHHHHCCCcEEEEeccCC
Confidence 456678999999999999999999999999999999754
No 130
>COG3380 Predicted NAD/FAD-dependent oxidoreductase [General function prediction only]
Probab=98.82 E-value=8.3e-09 Score=68.25 Aligned_cols=37 Identities=49% Similarity=0.767 Sum_probs=34.0
Q ss_pred ccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCCCCC
Q 047339 6 KDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGLRG 42 (115)
Q Consensus 6 ~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~~~~ 42 (115)
.+|+|||+|++|+++|+.|+.+|+.|+|+||....++
T Consensus 2 ~siaIVGaGiAGl~aA~~L~~aG~~vtV~eKg~GvGG 38 (331)
T COG3380 2 PSIAIVGAGIAGLAAAYALREAGREVTVFEKGRGVGG 38 (331)
T ss_pred CcEEEEccchHHHHHHHHHHhcCcEEEEEEcCCCccc
Confidence 4799999999999999999999999999999887654
No 131
>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit. Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.
Probab=98.81 E-value=8.1e-09 Score=78.93 Aligned_cols=39 Identities=38% Similarity=0.536 Sum_probs=35.2
Q ss_pred cccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCCCCCc
Q 047339 5 EKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGLRGT 43 (115)
Q Consensus 5 ~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~~~~~ 43 (115)
.++|+||||||+|+++|+.|++.|++|+|+|+.+.+++.
T Consensus 537 ~kkVaIIGGGPAGLSAA~~LAr~G~~VTV~Ek~~~lGG~ 575 (1012)
T TIGR03315 537 AHKVAVIGAGPAGLSAGYFLARAGHPVTVFEKKEKPGGV 575 (1012)
T ss_pred CCcEEEECCCHHHHHHHHHHHHCCCeEEEEecccccCce
Confidence 479999999999999999999999999999998776543
No 132
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A ....
Probab=98.81 E-value=8.4e-09 Score=65.56 Aligned_cols=34 Identities=56% Similarity=0.722 Sum_probs=27.6
Q ss_pred EEECCCHHHHHHHHHHHHCCCc-eEEEcCCCCCCC
Q 047339 9 VIIGAGIAGLATALALKRLGIK-PLVLEKSDGLRG 42 (115)
Q Consensus 9 ~IvG~G~~Gl~~A~~l~~~g~~-v~viE~~~~~~~ 42 (115)
+||||||+|+++|..|.+.|.+ ++|+|+++.+++
T Consensus 1 ~IIGaG~aGl~~a~~l~~~g~~~v~v~e~~~~~Gg 35 (203)
T PF13738_consen 1 VIIGAGPAGLAAAAHLLERGIDPVVVLERNDRPGG 35 (203)
T ss_dssp EEE--SHHHHHHHHHHHHTT---EEEEESSSSSTT
T ss_pred CEECcCHHHHHHHHHHHhCCCCcEEEEeCCCCCCC
Confidence 6999999999999999999999 999999977754
No 133
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=98.81 E-value=7.7e-09 Score=78.96 Aligned_cols=38 Identities=29% Similarity=0.459 Sum_probs=35.1
Q ss_pred cccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCCCCC
Q 047339 5 EKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGLRG 42 (115)
Q Consensus 5 ~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~~~~ 42 (115)
.++|+||||||+||++|+.|++.|++|+|||+.+.+++
T Consensus 306 gkkVaVIGsGPAGLsaA~~Lar~G~~VtVfE~~~~~GG 343 (944)
T PRK12779 306 KPPIAVVGSGPSGLINAYLLAVEGFPVTVFEAFHDLGG 343 (944)
T ss_pred CCeEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCCCCc
Confidence 57999999999999999999999999999999877654
No 134
>PTZ00363 rab-GDP dissociation inhibitor; Provisional
Probab=98.80 E-value=7.4e-09 Score=73.36 Aligned_cols=44 Identities=23% Similarity=0.305 Sum_probs=39.5
Q ss_pred ccccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCCCCCcceee
Q 047339 4 VEKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGLRGTGAAI 47 (115)
Q Consensus 4 ~~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~~~~~~~~~ 47 (115)
.++||+|||+|++||.+|..|++.|.+|+++|+++..++....+
T Consensus 3 ~~~DViViGtGL~e~ilAa~Ls~~GkkVLhlD~n~~yGG~~as~ 46 (443)
T PTZ00363 3 ETYDVIVCGTGLKECILSGLLSVNGKKVLHMDRNPYYGGESASL 46 (443)
T ss_pred CcceEEEECCChHHHHHHhhhhhCCCEEEEecCCCCcCcccccc
Confidence 46999999999999999999999999999999999887666544
No 135
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=98.80 E-value=9.1e-09 Score=68.81 Aligned_cols=33 Identities=45% Similarity=0.701 Sum_probs=31.4
Q ss_pred ccEEEECCCHHHHHHHHHHHHCCCceEEEcCCC
Q 047339 6 KDVVIIGAGIAGLATALALKRLGIKPLVLEKSD 38 (115)
Q Consensus 6 ~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~ 38 (115)
+||+|||||++|+.+|..|++.|++|+|+|+.+
T Consensus 1 ~dvvIIG~G~aGl~aA~~l~~~g~~v~lie~~~ 33 (300)
T TIGR01292 1 YDVIIIGAGPAGLTAAIYAARANLKTLIIEGME 33 (300)
T ss_pred CcEEEECCCHHHHHHHHHHHHCCCCEEEEeccC
Confidence 589999999999999999999999999999875
No 136
>TIGR03364 HpnW_proposed FAD dependent oxidoreductase TIGR03364. This clade of FAD dependent oxidoreductases (members of the pfam01266 family) is syntenically associated with a family of proposed phosphonatase-like enzymes (TIGR03351) and is also found (less frequently) in association with phosphonate transporter components. A likely role for this enzyme involves the oxidative deamination of an aminophosphonate differring slightly from 2-aminoethylphosphonate, possibly 1-hydroxy-2-aminoethylphosphonate (see the comments for TIGR03351). Many members of the larger FAD dependent oxidoreductase family act as amino acid oxidative deaminases.
Probab=98.80 E-value=1.2e-08 Score=70.41 Aligned_cols=34 Identities=47% Similarity=0.706 Sum_probs=31.9
Q ss_pred ccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCC
Q 047339 6 KDVVIIGAGIAGLATALALKRLGIKPLVLEKSDG 39 (115)
Q Consensus 6 ~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~ 39 (115)
+||+|||||++|+++|+.|+++|.+|+|+|+...
T Consensus 1 ~dv~IIG~Gi~G~s~A~~L~~~G~~V~vle~~~~ 34 (365)
T TIGR03364 1 YDLIIVGAGILGLAHAYAAARRGLSVTVIERSSR 34 (365)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCC
Confidence 5899999999999999999999999999998764
No 137
>PRK12409 D-amino acid dehydrogenase small subunit; Provisional
Probab=98.80 E-value=1.1e-08 Score=71.54 Aligned_cols=34 Identities=35% Similarity=0.597 Sum_probs=32.3
Q ss_pred ccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCC
Q 047339 6 KDVVIIGAGIAGLATALALKRLGIKPLVLEKSDG 39 (115)
Q Consensus 6 ~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~ 39 (115)
+||+|||||.+|+++|+.|+++|.+|+|+|+.+.
T Consensus 2 ~~vvIIGaG~~G~~~A~~La~~g~~V~vle~~~~ 35 (410)
T PRK12409 2 SHIAVIGAGITGVTTAYALAQRGYQVTVFDRHRY 35 (410)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCC
Confidence 5999999999999999999999999999999864
No 138
>PRK08626 fumarate reductase flavoprotein subunit; Provisional
Probab=98.79 E-value=1e-08 Score=75.76 Aligned_cols=40 Identities=35% Similarity=0.586 Sum_probs=37.2
Q ss_pred CCCccccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCCC
Q 047339 1 METVEKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGL 40 (115)
Q Consensus 1 m~~~~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~~ 40 (115)
|.+..+||+|||+|.+||++|+.++++|.+|+|+|+.+..
T Consensus 1 ~~~~~~DVlVIG~G~AGl~AAi~Aae~G~~VivleK~~~~ 40 (657)
T PRK08626 1 MKIIYTDALVIGAGLAGLRVAIAAAQRGLDTIVLSLVPAK 40 (657)
T ss_pred CCceeccEEEECccHHHHHHHHHHHHcCCCEEEEeCCCCC
Confidence 7788999999999999999999999999999999987654
No 139
>PRK06481 fumarate reductase flavoprotein subunit; Validated
Probab=98.79 E-value=1.2e-08 Score=73.35 Aligned_cols=39 Identities=41% Similarity=0.658 Sum_probs=35.3
Q ss_pred ccccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCCCCC
Q 047339 4 VEKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGLRG 42 (115)
Q Consensus 4 ~~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~~~~ 42 (115)
.++||+|||+|.+|+++|+.+++.|.+|+|+||.+..++
T Consensus 60 ~~~DVvVVG~G~AGl~AAi~Aa~~Ga~VivlEK~~~~GG 98 (506)
T PRK06481 60 DKYDIVIVGAGGAGMSAAIEAKDAGMNPVILEKMPVAGG 98 (506)
T ss_pred ccCCEEEECcCHHHHHHHHHHHHCCCCEEEEECCCCCCC
Confidence 367999999999999999999999999999999876543
No 140
>PRK07121 hypothetical protein; Validated
Probab=98.79 E-value=1.2e-08 Score=73.09 Aligned_cols=39 Identities=41% Similarity=0.641 Sum_probs=35.4
Q ss_pred ccccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCCCCC
Q 047339 4 VEKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGLRG 42 (115)
Q Consensus 4 ~~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~~~~ 42 (115)
.++||+|||+|.+|+++|+.++++|.+|+|+||....++
T Consensus 19 ~~~DVvVVGaG~AGl~AA~~aae~G~~VillEK~~~~gG 57 (492)
T PRK07121 19 DEADVVVVGFGAAGACAAIEAAAAGARVLVLERAAGAGG 57 (492)
T ss_pred CccCEEEECcCHHHHHHHHHHHHCCCeEEEEeCCCCCCC
Confidence 468999999999999999999999999999999876543
No 141
>PRK14727 putative mercuric reductase; Provisional
Probab=98.78 E-value=1.1e-08 Score=73.14 Aligned_cols=43 Identities=28% Similarity=0.449 Sum_probs=37.2
Q ss_pred CccccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCCCCCcce
Q 047339 3 TVEKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGLRGTGA 45 (115)
Q Consensus 3 ~~~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~~~~~~~ 45 (115)
+.++|++|||+|++|+.+|..|++.|.+|+|+|+.+..++.+.
T Consensus 14 ~~~~dvvvIG~G~aG~~~a~~~~~~g~~v~~ie~~~~~GG~c~ 56 (479)
T PRK14727 14 KLQLHVAIIGSGSAAFAAAIKAAEHGARVTIIEGADVIGGCCV 56 (479)
T ss_pred CCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEEccCcceeEec
Confidence 4579999999999999999999999999999998755554443
No 142
>PF00890 FAD_binding_2: FAD binding domain of the Pfam family.; InterPro: IPR003953 In bacteria two distinct, membrane-bound, enzyme complexes are responsible for the interconversion of fumarate and succinate (1.3.99.1 from EC): fumarate reductase (Frd) is used in anaerobic growth, and succinate dehydrogenase (Sdh) is used in aerobic growth. Both complexes consist of two main components: a membrane-extrinsic component composed of a FAD-binding flavoprotein and an iron-sulphur protein; and an hydrophobic component composed of a membrane anchor protein and/or a cytochrome B. In eukaryotes mitochondrial succinate dehydrogenase (ubiquinone) (1.3.5.1 from EC) is an enzyme composed of two subunits: a FAD flavoprotein and and iron-sulphur protein. The flavoprotein subunit is a protein of about 60 to 70 Kd to which FAD is covalently bound to a histidine residue which is located in the N-terminal section of the protein []. The sequence around that histidine is well conserved in Frd and Sdh from various bacterial and eukaryotic species []. This family includes members that bind FAD such as the flavoprotein subunits from succinate and fumarate dehydrogenase, aspartate oxidase and the alpha subunit of adenylylsulphate reductase. ; GO: 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2BS4_A 2BS3_A 2BS2_A 1E7P_J 1QLB_A 1KNR_A 1KNP_A 1CHU_A 2E5V_A 3AEF_A ....
Probab=98.78 E-value=9.6e-09 Score=72.00 Aligned_cols=34 Identities=50% Similarity=0.767 Sum_probs=30.5
Q ss_pred cEEEECCCHHHHHHHHHHHHCCCceEEEcCCCCC
Q 047339 7 DVVIIGAGIAGLATALALKRLGIKPLVLEKSDGL 40 (115)
Q Consensus 7 ~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~~ 40 (115)
||+|||+|++||++|+.++++|.+|+|+||.+..
T Consensus 1 DVvVIG~G~AGl~AA~~Aae~G~~V~lvek~~~~ 34 (417)
T PF00890_consen 1 DVVVIGGGLAGLAAAIEAAEAGAKVLLVEKGPRL 34 (417)
T ss_dssp SEEEE-SSHHHHHHHHHHHHTTT-EEEEESSSGG
T ss_pred CEEEECCCHHHHHHHHHHhhhcCeEEEEEeeccc
Confidence 8999999999999999999999999999998874
No 143
>PRK08274 tricarballylate dehydrogenase; Validated
Probab=98.77 E-value=1.1e-08 Score=72.71 Aligned_cols=36 Identities=39% Similarity=0.530 Sum_probs=33.3
Q ss_pred ccccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCC
Q 047339 4 VEKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDG 39 (115)
Q Consensus 4 ~~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~ 39 (115)
.++||+|||+|++|+++|+.++++|.+|+|+||.+.
T Consensus 3 ~~~DVvVVG~G~aGl~AA~~aa~~G~~V~vlEk~~~ 38 (466)
T PRK08274 3 SMVDVLVIGGGNAALCAALAAREAGASVLLLEAAPR 38 (466)
T ss_pred ccCCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCC
Confidence 358999999999999999999999999999999863
No 144
>COG1231 Monoamine oxidase [Amino acid transport and metabolism]
Probab=98.77 E-value=2.5e-08 Score=69.83 Aligned_cols=42 Identities=40% Similarity=0.671 Sum_probs=37.3
Q ss_pred ccccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCCCCCcce
Q 047339 4 VEKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGLRGTGA 45 (115)
Q Consensus 4 ~~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~~~~~~~ 45 (115)
...||+|||+|.+||.+|+.|.+.|++|+|+|..+..+++..
T Consensus 6 ~~~~viivGaGlaGL~AA~eL~kaG~~v~ilEar~r~GGR~~ 47 (450)
T COG1231 6 KTADVIIVGAGLAGLSAAYELKKAGYQVQILEARDRVGGRSL 47 (450)
T ss_pred CCCcEEEECCchHHHHHHHHHhhcCcEEEEEeccCCcCceeE
Confidence 357999999999999999999999999999999888765443
No 145
>PRK06327 dihydrolipoamide dehydrogenase; Validated
Probab=98.76 E-value=1.6e-08 Score=72.25 Aligned_cols=33 Identities=39% Similarity=0.609 Sum_probs=31.6
Q ss_pred ccccEEEECCCHHHHHHHHHHHHCCCceEEEcC
Q 047339 4 VEKDVVIIGAGIAGLATALALKRLGIKPLVLEK 36 (115)
Q Consensus 4 ~~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~ 36 (115)
.++|++|||+||+|+.+|+.+++.|.+|+|+|+
T Consensus 3 ~~~DviIIG~G~aG~~aA~~~~~~g~~v~lie~ 35 (475)
T PRK06327 3 KQFDVVVIGAGPGGYVAAIRAAQLGLKVACIEA 35 (475)
T ss_pred cceeEEEECCCHHHHHHHHHHHhCCCeEEEEec
Confidence 468999999999999999999999999999998
No 146
>PRK12831 putative oxidoreductase; Provisional
Probab=98.76 E-value=1.7e-08 Score=71.97 Aligned_cols=39 Identities=33% Similarity=0.478 Sum_probs=35.0
Q ss_pred ccccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCCCCC
Q 047339 4 VEKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGLRG 42 (115)
Q Consensus 4 ~~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~~~~ 42 (115)
..++|+||||||+|+++|+.|++.|++|+|+|+.+.+++
T Consensus 139 ~~~~V~IIG~GpAGl~aA~~l~~~G~~V~v~e~~~~~GG 177 (464)
T PRK12831 139 KGKKVAVIGSGPAGLTCAGDLAKMGYDVTIFEALHEPGG 177 (464)
T ss_pred CCCEEEEECcCHHHHHHHHHHHhCCCeEEEEecCCCCCC
Confidence 457999999999999999999999999999998776543
No 147
>PLN02852 ferredoxin-NADP+ reductase
Probab=98.76 E-value=1.8e-08 Score=72.18 Aligned_cols=40 Identities=28% Similarity=0.317 Sum_probs=35.5
Q ss_pred ccccEEEECCCHHHHHHHHHHHH--CCCceEEEcCCCCCCCc
Q 047339 4 VEKDVVIIGAGIAGLATALALKR--LGIKPLVLEKSDGLRGT 43 (115)
Q Consensus 4 ~~~~v~IvG~G~~Gl~~A~~l~~--~g~~v~viE~~~~~~~~ 43 (115)
.+.+|+|||+||+|+.+|..|++ .|++|+|||+.+.+++.
T Consensus 25 ~~~~VaIVGaGPAGl~AA~~L~~~~~g~~Vtv~E~~p~pgGl 66 (491)
T PLN02852 25 EPLHVCVVGSGPAGFYTADKLLKAHDGARVDIIERLPTPFGL 66 (491)
T ss_pred CCCcEEEECccHHHHHHHHHHHhhCCCCeEEEEecCCCCcce
Confidence 45789999999999999999987 79999999999887543
No 148
>PRK12834 putative FAD-binding dehydrogenase; Reviewed
Probab=98.76 E-value=1.8e-08 Score=73.20 Aligned_cols=36 Identities=36% Similarity=0.732 Sum_probs=34.2
Q ss_pred CccccEEEECCCHHHHHHHHHHHHCCCceEEEcCCC
Q 047339 3 TVEKDVVIIGAGIAGLATALALKRLGIKPLVLEKSD 38 (115)
Q Consensus 3 ~~~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~ 38 (115)
+.++||+|||+|.+||++|+.+++.|.+|+|+||.+
T Consensus 2 ~~~~DVvVVG~G~AGl~AAl~Aa~~G~~VivlEK~~ 37 (549)
T PRK12834 2 AMDADVIVVGAGLAGLVAAAELADAGKRVLLLDQEN 37 (549)
T ss_pred CccCCEEEECcCHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 467999999999999999999999999999999988
No 149
>PRK05192 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; Validated
Probab=98.76 E-value=1.3e-08 Score=74.22 Aligned_cols=36 Identities=42% Similarity=0.627 Sum_probs=33.4
Q ss_pred CccccEEEECCCHHHHHHHHHHHHCCCceEEEcCCC
Q 047339 3 TVEKDVVIIGAGIAGLATALALKRLGIKPLVLEKSD 38 (115)
Q Consensus 3 ~~~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~ 38 (115)
..++||+|||||++|+.+|+.+++.|.+|+++|++.
T Consensus 2 ~~~yDVIVVGGGpAG~eAA~~aAR~G~kV~LiE~~~ 37 (618)
T PRK05192 2 PEEYDVIVVGGGHAGCEAALAAARMGAKTLLLTHNL 37 (618)
T ss_pred CccceEEEECchHHHHHHHHHHHHcCCcEEEEeccc
Confidence 346999999999999999999999999999999874
No 150
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=98.75 E-value=1.5e-08 Score=75.05 Aligned_cols=34 Identities=47% Similarity=0.677 Sum_probs=32.1
Q ss_pred ccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCC
Q 047339 6 KDVVIIGAGIAGLATALALKRLGIKPLVLEKSDG 39 (115)
Q Consensus 6 ~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~ 39 (115)
+||+|||||++|+++|+.|+++|++|+|+|+...
T Consensus 261 ~dVvIIGaGIaG~s~A~~La~~G~~V~VlE~~~~ 294 (662)
T PRK01747 261 RDAAIIGGGIAGAALALALARRGWQVTLYEADEA 294 (662)
T ss_pred CCEEEECccHHHHHHHHHHHHCCCeEEEEecCCC
Confidence 6999999999999999999999999999999753
No 151
>PTZ00052 thioredoxin reductase; Provisional
Probab=98.75 E-value=1.7e-08 Score=72.50 Aligned_cols=34 Identities=29% Similarity=0.414 Sum_probs=31.7
Q ss_pred ccccEEEECCCHHHHHHHHHHHHCCCceEEEcCC
Q 047339 4 VEKDVVIIGAGIAGLATALALKRLGIKPLVLEKS 37 (115)
Q Consensus 4 ~~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~ 37 (115)
..+|++|||+||+|+.+|..++++|.+|+|+|+.
T Consensus 4 ~~yDviVIG~GpaG~~AA~~aa~~G~~V~lie~~ 37 (499)
T PTZ00052 4 FMYDLVVIGGGSGGMAAAKEAAAHGKKVALFDYV 37 (499)
T ss_pred cccCEEEECCCHHHHHHHHHHHhCCCeEEEEecc
Confidence 3589999999999999999999999999999973
No 152
>TIGR01373 soxB sarcosine oxidase, beta subunit family, heterotetrameric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms.
Probab=98.75 E-value=2e-08 Score=70.23 Aligned_cols=37 Identities=46% Similarity=0.500 Sum_probs=32.5
Q ss_pred CccccEEEECCCHHHHHHHHHHHHC-CC-ceEEEcCCCC
Q 047339 3 TVEKDVVIIGAGIAGLATALALKRL-GI-KPLVLEKSDG 39 (115)
Q Consensus 3 ~~~~~v~IvG~G~~Gl~~A~~l~~~-g~-~v~viE~~~~ 39 (115)
...+||+|||||++|+++|+.|+++ |. +|+|+|+...
T Consensus 28 ~~~~dvvIIGgGi~G~s~A~~L~~~~g~~~V~vle~~~~ 66 (407)
T TIGR01373 28 KPTYDVIIVGGGGHGLATAYYLAKEHGITNVAVLEKGWL 66 (407)
T ss_pred CccCCEEEECCcHHHHHHHHHHHHhcCCCeEEEEEcccc
Confidence 3468999999999999999999995 85 9999999753
No 153
>TIGR03329 Phn_aa_oxid putative aminophosphonate oxidoreductase. This clade of sequences are members of the pfam01266 family of FAD-dependent oxidoreductases. Characterized proteins within this family include glycerol-3-phosphate dehydrogenase (1.1.99.5), sarcosine oxidase beta subunit (1.5.3.1) and a number of deaminating amino acid oxidases (1.4.-.-). These genes have been consistently observed in a genomic context including genes for the import and catabolism of 2-aminoethylphosphonate (AEP). If the substrate of this oxidoreductase is AEP itself, then it is probably acting in the manner of a deaminating oxidase, resulting in the same product (phosphonoacetaldehyde) as the transaminase PhnW (TIGR02326), but releasing ammonia instead of coupling to pyruvate:alanine. Alternatively, it is reasonable to suppose that the various ABC cassette transporters which are also associated with these loci allow the import of phosphonates closely related to AEP which may not be substrates for PhnW.
Probab=98.75 E-value=1.6e-08 Score=71.89 Aligned_cols=36 Identities=39% Similarity=0.582 Sum_probs=32.9
Q ss_pred ccccEEEECCCHHHHHHHHHHHHC--CCceEEEcCCCC
Q 047339 4 VEKDVVIIGAGIAGLATALALKRL--GIKPLVLEKSDG 39 (115)
Q Consensus 4 ~~~~v~IvG~G~~Gl~~A~~l~~~--g~~v~viE~~~~ 39 (115)
.++||+|||||++|+++|+.|+++ |.+|+|+|+...
T Consensus 23 ~~~DVvIIGgGi~Gls~A~~La~~~~G~~V~vlE~~~~ 60 (460)
T TIGR03329 23 TQADVCIVGGGFTGLWTAIMIKQQRPALDVLVLEADLC 60 (460)
T ss_pred ceeCEEEECCCHHHHHHHHHHHHhCCCCeEEEEeCCcc
Confidence 468999999999999999999998 899999998754
No 154
>PRK12844 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=98.75 E-value=4.8e-08 Score=71.09 Aligned_cols=39 Identities=41% Similarity=0.721 Sum_probs=35.3
Q ss_pred ccccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCCCCC
Q 047339 4 VEKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGLRG 42 (115)
Q Consensus 4 ~~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~~~~ 42 (115)
.++||+|||+|.+|+++|+.+++.|.+|+|+|+....++
T Consensus 5 ~~~DvvIiG~G~aGl~aA~~~a~~G~~v~liEk~~~~gG 43 (557)
T PRK12844 5 ETYDVVVVGSGGGGMCAALAAADSGLEPLIVEKQDKVGG 43 (557)
T ss_pred CcCCEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCc
Confidence 478999999999999999999999999999999876543
No 155
>PRK10262 thioredoxin reductase; Provisional
Probab=98.75 E-value=2e-08 Score=68.29 Aligned_cols=35 Identities=26% Similarity=0.516 Sum_probs=32.3
Q ss_pred CccccEEEECCCHHHHHHHHHHHHCCCceEEEcCC
Q 047339 3 TVEKDVVIIGAGIAGLATALALKRLGIKPLVLEKS 37 (115)
Q Consensus 3 ~~~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~ 37 (115)
+..+||+||||||+|+.+|..|+++|++++++|+.
T Consensus 4 ~~~~~vvIIGgGpaGl~aA~~l~~~g~~~~~ie~~ 38 (321)
T PRK10262 4 TKHSKLLILGSGPAGYTAAVYAARANLQPVLITGM 38 (321)
T ss_pred CCcCCEEEECCCHHHHHHHHHHHHCCCCeEEEEee
Confidence 45799999999999999999999999999999954
No 156
>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]
Probab=98.74 E-value=2.6e-08 Score=70.69 Aligned_cols=50 Identities=40% Similarity=0.601 Sum_probs=42.5
Q ss_pred CccccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCCCCCcceeeeeCcc
Q 047339 3 TVEKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGLRGTGAAINFAPN 52 (115)
Q Consensus 3 ~~~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~~~~~~~~~~~~~~ 52 (115)
+++||++|||+||+|..+|..+++.|.+|.++|+....++.+-+..+-|.
T Consensus 2 ~~~yDvvVIG~GpaG~~aA~raa~~G~kvalvE~~~~lGGtCln~GCIPs 51 (454)
T COG1249 2 MKEYDVVVIGAGPAGYVAAIRAAQLGLKVALVEKGERLGGTCLNVGCIPS 51 (454)
T ss_pred CccccEEEECCCHHHHHHHHHHHhCCCCEEEEeecCCcCceEEeeCcccc
Confidence 46799999999999999999999999999999998766666666655543
No 157
>PF05834 Lycopene_cycl: Lycopene cyclase protein; InterPro: IPR008671 This family consists of lycopene beta and epsilon cyclase proteins. Carotenoids with cyclic end groups are essential components of the photosynthetic membranes in all plants, algae, and cyanobacteria. These lipid-soluble compounds protect against photo-oxidation, harvest light for photosynthesis, and dissipate excess light energy absorbed by the antenna pigments. The cyclisation of lycopene (psi, psi-carotene) is a key branch point in the pathway of carotenoid biosynthesis. Two types of cyclic end groups are found in higher plant carotenoids: the beta and epsilon rings. Carotenoids with two beta rings are ubiquitous, and those with one beta and one epsilon ring are common; however, carotenoids with two epsilon rings are rare [].; GO: 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0016117 carotenoid biosynthetic process
Probab=98.74 E-value=1.3e-08 Score=70.66 Aligned_cols=34 Identities=41% Similarity=0.629 Sum_probs=31.4
Q ss_pred cEEEECCCHHHHHHHHHH--HHCCCceEEEcCCCCC
Q 047339 7 DVVIIGAGIAGLATALAL--KRLGIKPLVLEKSDGL 40 (115)
Q Consensus 7 ~v~IvG~G~~Gl~~A~~l--~~~g~~v~viE~~~~~ 40 (115)
||+||||||+|+++|+.| ++.|.+|+|+|+.+..
T Consensus 1 DviIvGaGpAGlslA~~l~~~~~g~~Vllid~~~~~ 36 (374)
T PF05834_consen 1 DVIIVGAGPAGLSLARRLADARPGLSVLLIDPKPKP 36 (374)
T ss_pred CEEEECCcHHHHHHHHHHHhcCCCCEEEEEcCCccc
Confidence 899999999999999999 7789999999987664
No 158
>COG2907 Predicted NAD/FAD-binding protein [General function prediction only]
Probab=98.74 E-value=1.7e-08 Score=68.87 Aligned_cols=61 Identities=28% Similarity=0.460 Sum_probs=47.8
Q ss_pred ccccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCCCCCcceee--------------------eeCccHHHHHHHcCCh
Q 047339 4 VEKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGLRGTGAAI--------------------NFAPNAWLALDALGVS 63 (115)
Q Consensus 4 ~~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~~~~~~~~~--------------------~~~~~~~~~l~~~g~~ 63 (115)
...+|+|||+|++||++|+.|+++ ++|++||.+...++....+ -..|+...+++.+|+.
T Consensus 7 ~r~~IAVIGsGisGLSAA~~Ls~r-hdVTLfEA~~rlGGha~Tv~~~~d~~g~~vDtGfiVyn~~tYpnl~~Lf~~iGv~ 85 (447)
T COG2907 7 PRRKIAVIGSGISGLSAAWLLSRR-HDVTLFEADRRLGGHANTVAGNTDGGGVFVDTGFIVYNERTYPNLTRLFKTIGVD 85 (447)
T ss_pred CCcceEEEcccchhhhhHHhhhcc-cceEEEeccccccCccceeeccccCCceeecceeEEecCCCcchHHHHHHHcCCC
Confidence 357999999999999999999965 8999999988775543322 1357788888988876
Q ss_pred HH
Q 047339 64 HK 65 (115)
Q Consensus 64 ~~ 65 (115)
..
T Consensus 86 t~ 87 (447)
T COG2907 86 TK 87 (447)
T ss_pred Cc
Confidence 44
No 159
>PRK09078 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.73 E-value=2.1e-08 Score=73.53 Aligned_cols=37 Identities=35% Similarity=0.493 Sum_probs=33.6
Q ss_pred ccccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCCC
Q 047339 4 VEKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGL 40 (115)
Q Consensus 4 ~~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~~ 40 (115)
.++||+|||+|.+||++|+.+++.|.+|+|+||....
T Consensus 11 ~~~DVvVIG~G~AGl~AAl~Aa~~G~~V~lveK~~~~ 47 (598)
T PRK09078 11 HKYDVVVVGAGGAGLRATLGMAEAGLKTACITKVFPT 47 (598)
T ss_pred cccCEEEECccHHHHHHHHHHHHcCCcEEEEEccCCC
Confidence 4589999999999999999999999999999997643
No 160
>PRK02106 choline dehydrogenase; Validated
Probab=98.73 E-value=1.9e-08 Score=73.12 Aligned_cols=39 Identities=41% Similarity=0.505 Sum_probs=36.0
Q ss_pred CCCccccEEEECCCHHHHHHHHHHHH-CCCceEEEcCCCC
Q 047339 1 METVEKDVVIIGAGIAGLATALALKR-LGIKPLVLEKSDG 39 (115)
Q Consensus 1 m~~~~~~v~IvG~G~~Gl~~A~~l~~-~g~~v~viE~~~~ 39 (115)
|.+.++|+||||+|++|+.+|..|++ .|++|+|+|+.+.
T Consensus 1 ~~~~~~D~iIVG~G~aG~vvA~rLae~~g~~VlvlEaG~~ 40 (560)
T PRK02106 1 MTTMEYDYIIIGAGSAGCVLANRLSEDPDVSVLLLEAGGP 40 (560)
T ss_pred CCCCcCcEEEECCcHHHHHHHHHHHhCCCCeEEEecCCCc
Confidence 66778999999999999999999999 8999999999853
No 161
>PRK00711 D-amino acid dehydrogenase small subunit; Validated
Probab=98.72 E-value=2.2e-08 Score=70.07 Aligned_cols=33 Identities=30% Similarity=0.638 Sum_probs=31.3
Q ss_pred cEEEECCCHHHHHHHHHHHHCCCceEEEcCCCC
Q 047339 7 DVVIIGAGIAGLATALALKRLGIKPLVLEKSDG 39 (115)
Q Consensus 7 ~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~ 39 (115)
||+|||||.+|+++|+.|+++|++|+|+|+...
T Consensus 2 ~v~IVG~Gi~Gls~A~~l~~~g~~V~vle~~~~ 34 (416)
T PRK00711 2 RVVVLGSGVIGVTSAWYLAQAGHEVTVIDRQPG 34 (416)
T ss_pred EEEEECCcHHHHHHHHHHHHCCCEEEEEeCCCc
Confidence 899999999999999999999999999999754
No 162
>PLN02507 glutathione reductase
Probab=98.71 E-value=2.8e-08 Score=71.45 Aligned_cols=32 Identities=31% Similarity=0.412 Sum_probs=31.0
Q ss_pred cccEEEECCCHHHHHHHHHHHHCCCceEEEcC
Q 047339 5 EKDVVIIGAGIAGLATALALKRLGIKPLVLEK 36 (115)
Q Consensus 5 ~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~ 36 (115)
+||++|||+||+|+.+|..+++.|.+|+|+|+
T Consensus 25 ~yDvvVIG~GpaG~~aA~~a~~~G~~V~liE~ 56 (499)
T PLN02507 25 DFDLFVIGAGSGGVRAARFSANFGAKVGICEL 56 (499)
T ss_pred ccCEEEECCCHHHHHHHHHHHHCCCeEEEEec
Confidence 58999999999999999999999999999996
No 163
>PRK07804 L-aspartate oxidase; Provisional
Probab=98.71 E-value=3e-08 Score=71.92 Aligned_cols=38 Identities=42% Similarity=0.609 Sum_probs=34.9
Q ss_pred CccccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCCC
Q 047339 3 TVEKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGL 40 (115)
Q Consensus 3 ~~~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~~ 40 (115)
+.++||+|||+|.+||++|+.+++.|.+|+|+||....
T Consensus 14 ~~~~DVlVIG~G~AGl~AAi~aae~G~~VilleK~~~~ 51 (541)
T PRK07804 14 RDAADVVVVGSGVAGLTAALAARRAGRRVLVVTKAALD 51 (541)
T ss_pred ccccCEEEECccHHHHHHHHHHHHcCCeEEEEEccCCC
Confidence 45789999999999999999999999999999998764
No 164
>TIGR01813 flavo_cyto_c flavocytochrome c. This model describes a family of redox proteins related to the succinate dehydrogenases and fumarate reductases of E. coli, mitochondria, and other well-characterized systems. A member of this family from Shewanella frigidimarina NCIMB400 is characterized as a water-soluble periplasmic protein with four heme groups, a non-covalently bound FAD, and essentially unidirectional fumarate reductase activity. At least seven distinct members of this family are found in Shewanella oneidensis, a species able to use a wide variety of pathways for respiraton.
Probab=98.71 E-value=2.9e-08 Score=70.16 Aligned_cols=35 Identities=43% Similarity=0.708 Sum_probs=32.6
Q ss_pred cEEEECCCHHHHHHHHHHHHCC-CceEEEcCCCCCC
Q 047339 7 DVVIIGAGIAGLATALALKRLG-IKPLVLEKSDGLR 41 (115)
Q Consensus 7 ~v~IvG~G~~Gl~~A~~l~~~g-~~v~viE~~~~~~ 41 (115)
||+|||+|.+|+++|+.++++| .+|+|+||.+..+
T Consensus 1 DVvVVG~G~AGl~AA~~aa~~G~~~V~vlEk~~~~g 36 (439)
T TIGR01813 1 DVVVVGSGFAGLSAALSAKKAGAANVVLLEKMPVIG 36 (439)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCccEEEEecCCCCC
Confidence 7999999999999999999999 9999999987654
No 165
>PTZ00139 Succinate dehydrogenase [ubiquinone] flavoprotein subunit; Provisional
Probab=98.70 E-value=3.1e-08 Score=72.83 Aligned_cols=37 Identities=41% Similarity=0.475 Sum_probs=34.1
Q ss_pred ccccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCCC
Q 047339 4 VEKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGL 40 (115)
Q Consensus 4 ~~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~~ 40 (115)
.++||+|||+|.+||++|+.+++.|.+|+|+||....
T Consensus 28 ~~~DVlVIG~G~AGl~AAi~Aa~~G~~V~lveK~~~~ 64 (617)
T PTZ00139 28 HTYDAVVVGAGGAGLRAALGLVELGYKTACISKLFPT 64 (617)
T ss_pred cccCEEEECccHHHHHHHHHHHHcCCcEEEEeccCCC
Confidence 4689999999999999999999999999999997654
No 166
>PRK05257 malate:quinone oxidoreductase; Validated
Probab=98.70 E-value=2.6e-08 Score=71.57 Aligned_cols=38 Identities=37% Similarity=0.526 Sum_probs=33.5
Q ss_pred CCccccEEEECCCHHHHHHHHHHHHC--CCceEEEcCCCC
Q 047339 2 ETVEKDVVIIGAGIAGLATALALKRL--GIKPLVLEKSDG 39 (115)
Q Consensus 2 ~~~~~~v~IvG~G~~Gl~~A~~l~~~--g~~v~viE~~~~ 39 (115)
...++||+|||||++|+++|+.|++. |.+|+|+||...
T Consensus 2 ~~~~~DVvIIGgGIiG~slA~~L~~~~~g~~V~VlEk~~~ 41 (494)
T PRK05257 2 EESKTDVVLIGGGIMSATLGTLLKELEPEWSITMFERLDG 41 (494)
T ss_pred CCccceEEEECcHHHHHHHHHHHHHhCCCCeEEEEEcCCc
Confidence 34568999999999999999999984 789999999764
No 167
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=98.69 E-value=4.2e-08 Score=69.73 Aligned_cols=38 Identities=39% Similarity=0.456 Sum_probs=34.5
Q ss_pred ccccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCCCC
Q 047339 4 VEKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGLR 41 (115)
Q Consensus 4 ~~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~~~ 41 (115)
..++|+|||+|++|+++|..|++.|++|+|+|+.+.++
T Consensus 132 ~~~~V~IIG~G~aGl~aA~~l~~~G~~V~vie~~~~~G 169 (449)
T TIGR01316 132 THKKVAVIGAGPAGLACASELAKAGHSVTVFEALHKPG 169 (449)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCC
Confidence 35799999999999999999999999999999987654
No 168
>PF07992 Pyr_redox_2: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR023753 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes the FAD binding domain which has a nested NADH binding domain and is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3IC9_A 1Q1W_A 3LB8_A 1Q1R_B 3GD4_A 1GV4_A 3GD3_A 2EQ9_E 2EQ6_B 2EQ8_E ....
Probab=98.69 E-value=3.2e-08 Score=62.69 Aligned_cols=33 Identities=64% Similarity=0.906 Sum_probs=30.8
Q ss_pred cEEEECCCHHHHHHHHHHHHCCCceEEEcCCCC
Q 047339 7 DVVIIGAGIAGLATALALKRLGIKPLVLEKSDG 39 (115)
Q Consensus 7 ~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~ 39 (115)
||+|||||++|+.+|..|++.+++++|+|+.+.
T Consensus 1 ~vvIIGgG~aGl~aA~~l~~~~~~v~ii~~~~~ 33 (201)
T PF07992_consen 1 DVVIIGGGPAGLSAALELARPGAKVLIIEKSPG 33 (201)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTSEEEEESSSSH
T ss_pred CEEEEecHHHHHHHHHHHhcCCCeEEEEecccc
Confidence 699999999999999999999999999988764
No 169
>PRK09853 putative selenate reductase subunit YgfK; Provisional
Probab=98.69 E-value=3.5e-08 Score=75.43 Aligned_cols=39 Identities=44% Similarity=0.607 Sum_probs=35.2
Q ss_pred cccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCCCCCc
Q 047339 5 EKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGLRGT 43 (115)
Q Consensus 5 ~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~~~~~ 43 (115)
.++|+||||||+|+++|+.|++.|++|+|+|+.+.+++.
T Consensus 539 gKkVaIIGgGPAGLsAA~~Lar~G~~VtV~Ek~~~~GG~ 577 (1019)
T PRK09853 539 RKKVAVIGAGPAGLAAAYFLARAGHPVTVFEREENAGGV 577 (1019)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcCCeEEEEecccccCcc
Confidence 468999999999999999999999999999998776543
No 170
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=98.68 E-value=3.9e-08 Score=72.74 Aligned_cols=38 Identities=45% Similarity=0.619 Sum_probs=34.6
Q ss_pred cccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCCCCC
Q 047339 5 EKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGLRG 42 (115)
Q Consensus 5 ~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~~~~ 42 (115)
.++|+|||+||+||++|..|++.|++|+|+|+.+.+++
T Consensus 327 ~~~VaIIGaGpAGLsaA~~L~~~G~~V~V~E~~~~~GG 364 (654)
T PRK12769 327 DKRVAIIGAGPAGLACADVLARNGVAVTVYDRHPEIGG 364 (654)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCc
Confidence 47999999999999999999999999999999877643
No 171
>PRK12837 3-ketosteroid-delta-1-dehydrogenase; Provisional
Probab=98.68 E-value=3.8e-08 Score=71.00 Aligned_cols=37 Identities=32% Similarity=0.536 Sum_probs=33.8
Q ss_pred ccccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCCCC
Q 047339 4 VEKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGLR 41 (115)
Q Consensus 4 ~~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~~~ 41 (115)
.++||+|||+| +|+++|+.+++.|.+|+|+||.+..+
T Consensus 6 ~~~DVvVVG~G-aGl~aA~~aa~~G~~V~vlEk~~~~G 42 (513)
T PRK12837 6 EEVDVLVAGSG-GGVAGAYTAAREGLSVALVEATDKFG 42 (513)
T ss_pred CccCEEEECch-HHHHHHHHHHHCCCcEEEEecCCCCC
Confidence 46899999999 99999999999999999999987643
No 172
>PF00732 GMC_oxred_N: GMC oxidoreductase; InterPro: IPR000172 The glucose-methanol-choline (GMC) oxidoreductases are FAD flavoproteins oxidoreductases [, ]. These enzymes include a variety of proteins; choline dehydrogenase (CHD), methanol oxidase (MOX) and cellobiose dehydrogenase (1.1.99.18 from EC) [] which share a number of regions of sequence similarities. One of these regions, located in the N-terminal section, corresponds to the FAD ADP- binding domain. The function of the other conserved domains is not yet known.; GO: 0016614 oxidoreductase activity, acting on CH-OH group of donors, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 3Q9T_B 1B4V_A 3GYJ_A 1CBO_A 1B8S_A 1N4V_A 1N4W_A 3CNJ_A 1IJH_A 2GEW_A ....
Probab=98.68 E-value=2.3e-08 Score=67.18 Aligned_cols=35 Identities=37% Similarity=0.501 Sum_probs=30.3
Q ss_pred ccEEEECCCHHHHHHHHHHHHCC-CceEEEcCCCCC
Q 047339 6 KDVVIIGAGIAGLATALALKRLG-IKPLVLEKSDGL 40 (115)
Q Consensus 6 ~~v~IvG~G~~Gl~~A~~l~~~g-~~v~viE~~~~~ 40 (115)
||+||||+|++|+++|..|++.+ .+|+|+|+....
T Consensus 1 yD~iIVGsG~~G~v~A~rLs~~~~~~VlvlEaG~~~ 36 (296)
T PF00732_consen 1 YDYIIVGSGAGGSVVASRLSEAGNKKVLVLEAGPRY 36 (296)
T ss_dssp EEEEEES-SHHHHHHHHHHTTSTTS-EEEEESSBSC
T ss_pred CCEEEECcCHHHHHHHHHHhhCCCCcEEEEEccccC
Confidence 69999999999999999999997 799999998764
No 173
>COG0562 Glf UDP-galactopyranose mutase [Cell envelope biogenesis, outer membrane]
Probab=98.68 E-value=4.1e-08 Score=66.33 Aligned_cols=38 Identities=34% Similarity=0.595 Sum_probs=35.4
Q ss_pred ccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCCCCCc
Q 047339 6 KDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGLRGT 43 (115)
Q Consensus 6 ~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~~~~~ 43 (115)
+|++|||+|++|+..|..|++.|.+|+|+|+.+..++.
T Consensus 2 fd~lIVGaGlsG~V~A~~a~~~gk~VLIvekR~HIGGN 39 (374)
T COG0562 2 FDYLIVGAGLSGAVIAEVAAQLGKRVLIVEKRNHIGGN 39 (374)
T ss_pred CcEEEECCchhHHHHHHHHHHcCCEEEEEeccccCCCc
Confidence 79999999999999999999999999999999988653
No 174
>PTZ00383 malate:quinone oxidoreductase; Provisional
Probab=98.68 E-value=3.3e-08 Score=71.00 Aligned_cols=38 Identities=29% Similarity=0.460 Sum_probs=33.1
Q ss_pred CCccccEEEECCCHHHHHHHHHHHHC-C-CceEEEcCCCC
Q 047339 2 ETVEKDVVIIGAGIAGLATALALKRL-G-IKPLVLEKSDG 39 (115)
Q Consensus 2 ~~~~~~v~IvG~G~~Gl~~A~~l~~~-g-~~v~viE~~~~ 39 (115)
.+..+||+|||||++|+++|+.|++. + .+|+|+|+.+.
T Consensus 42 ~~~~~DVvIIGGGI~G~a~A~~La~~~~~~~V~VlEk~~~ 81 (497)
T PTZ00383 42 GSDVYDVVIVGGGVTGTALFYTLSKFTNLKKIALIERRSD 81 (497)
T ss_pred cCCcccEEEECccHHHHHHHHHHHhhCCCCEEEEEecCcc
Confidence 34578999999999999999999996 3 69999999763
No 175
>PRK12845 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=98.67 E-value=6.7e-08 Score=70.45 Aligned_cols=39 Identities=38% Similarity=0.702 Sum_probs=35.1
Q ss_pred CccccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCCCCC
Q 047339 3 TVEKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGLRG 42 (115)
Q Consensus 3 ~~~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~~~~ 42 (115)
+.++||+|||+| +|+++|+.+++.|.+|+|+||.+..++
T Consensus 14 d~e~DvvvvG~G-~G~~aA~~a~~~G~~v~v~Ek~~~~GG 52 (564)
T PRK12845 14 DTTVDLLVVGSG-TGMAAALAAHELGLSVLIVEKSSYVGG 52 (564)
T ss_pred CceeCEEEECCc-HHHHHHHHHHHCCCcEEEEecCCCCcC
Confidence 357899999999 899999999999999999999877654
No 176
>PRK08641 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.67 E-value=4.5e-08 Score=71.66 Aligned_cols=36 Identities=19% Similarity=0.396 Sum_probs=33.1
Q ss_pred cccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCCC
Q 047339 5 EKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGL 40 (115)
Q Consensus 5 ~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~~ 40 (115)
+.||+|||+|.+||++|+.++++|.+|+|+||....
T Consensus 3 ~~DVlVVG~G~AGl~AAi~Aa~~G~~V~lieK~~~~ 38 (589)
T PRK08641 3 KGKVIVVGGGLAGLMATIKAAEAGVHVDLFSLVPVK 38 (589)
T ss_pred CccEEEECchHHHHHHHHHHHHcCCcEEEEEccCCC
Confidence 469999999999999999999999999999987654
No 177
>PRK07573 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.66 E-value=4.9e-08 Score=72.11 Aligned_cols=37 Identities=32% Similarity=0.493 Sum_probs=33.5
Q ss_pred ccccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCCC
Q 047339 4 VEKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGL 40 (115)
Q Consensus 4 ~~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~~ 40 (115)
+++||+|||+|.+||++|+.+++.|.+|+|+|+...+
T Consensus 34 ~~~DVlVVG~G~AGl~AAi~Aae~G~~VilieK~~~~ 70 (640)
T PRK07573 34 RKFDVIVVGTGLAGASAAATLGELGYNVKVFCYQDSP 70 (640)
T ss_pred cccCEEEECccHHHHHHHHHHHHcCCcEEEEecCCCC
Confidence 4689999999999999999999999999999986543
No 178
>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form. This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=98.66 E-value=4.5e-08 Score=75.28 Aligned_cols=38 Identities=39% Similarity=0.645 Sum_probs=35.0
Q ss_pred cccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCCCCC
Q 047339 5 EKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGLRG 42 (115)
Q Consensus 5 ~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~~~~ 42 (115)
.+||+||||||+||++|+.+++.|++|+|+|+.+..++
T Consensus 163 ~~dVvIIGaGPAGLaAA~~aar~G~~V~liD~~~~~GG 200 (985)
T TIGR01372 163 HCDVLVVGAGPAGLAAALAAARAGARVILVDEQPEAGG 200 (985)
T ss_pred cCCEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCCC
Confidence 57999999999999999999999999999999877654
No 179
>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []. Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....
Probab=98.66 E-value=3.6e-08 Score=71.37 Aligned_cols=40 Identities=43% Similarity=0.560 Sum_probs=32.2
Q ss_pred cccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCCCCCcc
Q 047339 5 EKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGLRGTG 44 (115)
Q Consensus 5 ~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~~~~~~ 44 (115)
+++|+|||||++||++|..|.+.|++++++|+++..++..
T Consensus 1 ~krVaVIGaG~sGL~a~k~l~e~g~~~~~fE~~~~iGG~W 40 (531)
T PF00743_consen 1 AKRVAVIGAGPSGLAAAKNLLEEGLEVTCFEKSDDIGGLW 40 (531)
T ss_dssp --EEEEE--SHHHHHHHHHHHHTT-EEEEEESSSSSSGGG
T ss_pred CCEEEEECccHHHHHHHHHHHHCCCCCeEEecCCCCCccC
Confidence 3689999999999999999999999999999999886643
No 180
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=98.66 E-value=5.1e-08 Score=73.15 Aligned_cols=38 Identities=34% Similarity=0.421 Sum_probs=34.3
Q ss_pred ccccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCCCC
Q 047339 4 VEKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGLR 41 (115)
Q Consensus 4 ~~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~~~ 41 (115)
..++|+||||||+|+++|..|++.|++|+|||+.+.++
T Consensus 430 ~~~~V~IIGaGpAGl~aA~~l~~~G~~V~v~e~~~~~G 467 (752)
T PRK12778 430 NGKKVAVIGSGPAGLSFAGDLAKRGYDVTVFEALHEIG 467 (752)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCCC
Confidence 35799999999999999999999999999999976654
No 181
>PRK13977 myosin-cross-reactive antigen; Provisional
Probab=98.66 E-value=6.3e-08 Score=70.23 Aligned_cols=39 Identities=41% Similarity=0.512 Sum_probs=34.8
Q ss_pred cccEEEECCCHHHHHHHHHHHHC----CCceEEEcCCCCCCCc
Q 047339 5 EKDVVIIGAGIAGLATALALKRL----GIKPLVLEKSDGLRGT 43 (115)
Q Consensus 5 ~~~v~IvG~G~~Gl~~A~~l~~~----g~~v~viE~~~~~~~~ 43 (115)
+.+++|||||++||++|++|.+. |.+|+|+|+.+.+++.
T Consensus 22 ~~~a~IIGaGiAGLAAA~~L~~dg~~~G~~VtIlEk~~~~GG~ 64 (576)
T PRK13977 22 NKKAYIIGSGLASLAAAVFLIRDGQMPGENITILEELDVPGGS 64 (576)
T ss_pred CCeEEEECCCHHHHHHHHHHHHccCCCCCcEEEEeCCCCCCCC
Confidence 47899999999999999999995 6899999999887654
No 182
>TIGR01320 mal_quin_oxido malate:quinone-oxidoreductase. This membrane-associated enzyme is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in E. coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase.
Probab=98.65 E-value=3.4e-08 Score=70.79 Aligned_cols=34 Identities=35% Similarity=0.558 Sum_probs=31.4
Q ss_pred ccEEEECCCHHHHHHHHHHHHC--CCceEEEcCCCC
Q 047339 6 KDVVIIGAGIAGLATALALKRL--GIKPLVLEKSDG 39 (115)
Q Consensus 6 ~~v~IvG~G~~Gl~~A~~l~~~--g~~v~viE~~~~ 39 (115)
+||+|||||++|+++|+.|++. |.+|+|+|+...
T Consensus 1 ~DVvIIGgGI~G~a~A~~L~~~~~g~~V~VlEk~~~ 36 (483)
T TIGR01320 1 TDVVLIGAGIMSATLGVLLRELEPNWSITLIERLDA 36 (483)
T ss_pred CcEEEECchHHHHHHHHHHHHhCCCCeEEEEEcCCc
Confidence 5899999999999999999996 999999999654
No 183
>TIGR01789 lycopene_cycl lycopene cyclase. This model represents a family of bacterial lycopene cyclases catalyzing the transformation of lycopene to carotene. These enzymes are found in a limited spectrum of alpha and gamma proteobacteria as well as Flavobacterium.
Probab=98.65 E-value=4.8e-08 Score=67.86 Aligned_cols=34 Identities=35% Similarity=0.581 Sum_probs=31.4
Q ss_pred cEEEECCCHHHHHHHHHHHHC--CCceEEEcCCCCC
Q 047339 7 DVVIIGAGIAGLATALALKRL--GIKPLVLEKSDGL 40 (115)
Q Consensus 7 ~v~IvG~G~~Gl~~A~~l~~~--g~~v~viE~~~~~ 40 (115)
||+|||||++|+++|+.|++. |++|+|+|+.+..
T Consensus 1 DviIvGaG~AGl~lA~~L~~~~~g~~V~lle~~~~~ 36 (370)
T TIGR01789 1 DCIIVGGGLAGGLIALRLQRARPDFRIRVIEAGRTI 36 (370)
T ss_pred CEEEECccHHHHHHHHHHHhcCCCCeEEEEeCCCCC
Confidence 799999999999999999987 9999999997644
No 184
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=98.65 E-value=4.1e-08 Score=75.57 Aligned_cols=38 Identities=37% Similarity=0.463 Sum_probs=34.5
Q ss_pred cccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCCCCC
Q 047339 5 EKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGLRG 42 (115)
Q Consensus 5 ~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~~~~ 42 (115)
.++|+||||||+||++|..|++.|++|+|||+.+.+++
T Consensus 430 ~~kVaIIG~GPAGLsaA~~La~~G~~VtV~E~~~~~GG 467 (1006)
T PRK12775 430 LGKVAICGSGPAGLAAAADLVKYGVDVTVYEALHVVGG 467 (1006)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCCcc
Confidence 46899999999999999999999999999998876643
No 185
>PRK06854 adenylylsulfate reductase subunit alpha; Validated
Probab=98.65 E-value=4.5e-08 Score=71.89 Aligned_cols=37 Identities=38% Similarity=0.644 Sum_probs=33.6
Q ss_pred ccccEEEECCCHHHHHHHHHHHHC--CCceEEEcCCCCC
Q 047339 4 VEKDVVIIGAGIAGLATALALKRL--GIKPLVLEKSDGL 40 (115)
Q Consensus 4 ~~~~v~IvG~G~~Gl~~A~~l~~~--g~~v~viE~~~~~ 40 (115)
.++||+|||+|.+||++|+.+++. |.+|+|+||....
T Consensus 10 ~~~DVlVIG~G~AGl~AAi~Aae~~~G~~V~lieK~~~~ 48 (608)
T PRK06854 10 VDTDILIIGGGMAGCGAAFEAKEWAPDLKVLIVEKANIK 48 (608)
T ss_pred eEeCEEEECcCHHHHHHHHHHHHhCCCCeEEEEECCCcC
Confidence 368999999999999999999998 9999999997653
No 186
>PLN00128 Succinate dehydrogenase [ubiquinone] flavoprotein subunit
Probab=98.65 E-value=5e-08 Score=71.96 Aligned_cols=37 Identities=32% Similarity=0.418 Sum_probs=33.9
Q ss_pred ccccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCCC
Q 047339 4 VEKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGL 40 (115)
Q Consensus 4 ~~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~~ 40 (115)
.++||+|||+|.+||++|+.+++.|.+|+|+||....
T Consensus 49 ~~~DVlVIG~G~AGl~AAl~Aae~G~~VilveK~~~~ 85 (635)
T PLN00128 49 HTYDAVVVGAGGAGLRAAIGLSEHGFNTACITKLFPT 85 (635)
T ss_pred eecCEEEECccHHHHHHHHHHHhcCCcEEEEEcCCCC
Confidence 4579999999999999999999999999999998654
No 187
>TIGR00137 gid_trmFO tRNA:m(5)U-54 methyltransferase. This model represents an orthologous set of proteins present in relatively few bacteria but very tightly conserved where it occurs. It is closely related to gidA (glucose-inhibited division protein A), which appears to be present in all complete eubacterial genomes so far and in Saccharomyces cerevisiae. It was designated gid but is now recognized as a tRNA:m(5)U-54 methyltransferase and is now designated trmFO.
Probab=98.65 E-value=4.6e-08 Score=68.98 Aligned_cols=35 Identities=29% Similarity=0.454 Sum_probs=32.1
Q ss_pred ccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCCC
Q 047339 6 KDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGL 40 (115)
Q Consensus 6 ~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~~ 40 (115)
.+|+|||||++|+.+|+.|++.|++|+|+|+.+..
T Consensus 1 ~~VvVIGgGlAGleaA~~LAr~G~~V~LiE~rp~~ 35 (433)
T TIGR00137 1 TPVHVIGGGLAGSEAAWQLAQAGVPVILYEMRPEK 35 (433)
T ss_pred CCEEEECCCHHHHHHHHHHHhCCCcEEEEeccccc
Confidence 37999999999999999999999999999987653
No 188
>COG1148 HdrA Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion]
Probab=98.65 E-value=4.7e-08 Score=69.25 Aligned_cols=40 Identities=40% Similarity=0.745 Sum_probs=36.6
Q ss_pred ccccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCCCCCc
Q 047339 4 VEKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGLRGT 43 (115)
Q Consensus 4 ~~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~~~~~ 43 (115)
+..+++|||||++|+++|+.|+..|++|.++|+++..+++
T Consensus 123 v~~svLVIGGGvAGitAAl~La~~G~~v~LVEKepsiGGr 162 (622)
T COG1148 123 VSKSVLVIGGGVAGITAALELADMGFKVYLVEKEPSIGGR 162 (622)
T ss_pred hccceEEEcCcHHHHHHHHHHHHcCCeEEEEecCCccccc
Confidence 4578999999999999999999999999999999987653
No 189
>PRK06175 L-aspartate oxidase; Provisional
Probab=98.65 E-value=5.1e-08 Score=69.03 Aligned_cols=37 Identities=38% Similarity=0.580 Sum_probs=33.0
Q ss_pred ccccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCCCC
Q 047339 4 VEKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGLR 41 (115)
Q Consensus 4 ~~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~~~ 41 (115)
+++||+|||+|.+||++|+.+. .|.+|+|+||.+..+
T Consensus 3 ~~~DVvVVG~G~AGl~AA~~a~-~G~~V~lleK~~~~g 39 (433)
T PRK06175 3 LYADVLIVGSGVAGLYSALNLR-KDLKILMVSKGKLNE 39 (433)
T ss_pred ccccEEEECchHHHHHHHHHhc-cCCCEEEEecCCCCC
Confidence 5689999999999999999985 799999999987653
No 190
>PTZ00188 adrenodoxin reductase; Provisional
Probab=98.65 E-value=6.1e-08 Score=69.26 Aligned_cols=41 Identities=32% Similarity=0.233 Sum_probs=34.8
Q ss_pred cccEEEECCCHHHHHHHHHH-HHCCCceEEEcCCCCCCCcce
Q 047339 5 EKDVVIIGAGIAGLATALAL-KRLGIKPLVLEKSDGLRGTGA 45 (115)
Q Consensus 5 ~~~v~IvG~G~~Gl~~A~~l-~~~g~~v~viE~~~~~~~~~~ 45 (115)
+.+|+|||+||+|+.+|..| ++.|++|+|||+.+.+++..+
T Consensus 39 ~krVAIVGaGPAGlyaA~~Ll~~~g~~VtlfEk~p~pgGLvR 80 (506)
T PTZ00188 39 PFKVGIIGAGPSALYCCKHLLKHERVKVDIFEKLPNPYGLIR 80 (506)
T ss_pred CCEEEEECCcHHHHHHHHHHHHhcCCeEEEEecCCCCccEEE
Confidence 56899999999999999965 567999999999998865433
No 191
>TIGR01423 trypano_reduc trypanothione-disulfide reductase. Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.
Probab=98.64 E-value=5.1e-08 Score=69.91 Aligned_cols=34 Identities=29% Similarity=0.424 Sum_probs=31.5
Q ss_pred ccccEEEECCCHHHHHHHHHHHHC-CCceEEEcCC
Q 047339 4 VEKDVVIIGAGIAGLATALALKRL-GIKPLVLEKS 37 (115)
Q Consensus 4 ~~~~v~IvG~G~~Gl~~A~~l~~~-g~~v~viE~~ 37 (115)
.++|++|||+||+|+.+|..+++. |.+|+|+|+.
T Consensus 2 ~~~DviVIG~G~~G~~aA~~aa~~~g~~V~lie~~ 36 (486)
T TIGR01423 2 KAFDLVVIGAGSGGLEAGWNAATLYKKRVAVIDVQ 36 (486)
T ss_pred CccCEEEECCChHHHHHHHHHHHhcCCEEEEEecc
Confidence 469999999999999999999996 9999999974
No 192
>COG0579 Predicted dehydrogenase [General function prediction only]
Probab=98.64 E-value=4.9e-08 Score=68.69 Aligned_cols=38 Identities=47% Similarity=0.705 Sum_probs=35.0
Q ss_pred ccccEEEECCCHHHHHHHHHHHHCC--CceEEEcCCCCCC
Q 047339 4 VEKDVVIIGAGIAGLATALALKRLG--IKPLVLEKSDGLR 41 (115)
Q Consensus 4 ~~~~v~IvG~G~~Gl~~A~~l~~~g--~~v~viE~~~~~~ 41 (115)
+++||+|||||+.|+++|+.|++.+ ++|+|+||...+.
T Consensus 2 ~~~DvvIIGgGI~G~a~a~~Ls~~~p~~~V~llEk~~~~a 41 (429)
T COG0579 2 MDYDVVIIGGGIMGAATAYELSEYEPDLSVALLEKEDGVA 41 (429)
T ss_pred CceeEEEECCcHHHHHHHHHHHHhCCCceEEEEEccCccc
Confidence 5689999999999999999999998 9999999988763
No 193
>PRK12835 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=98.64 E-value=5.9e-08 Score=71.02 Aligned_cols=39 Identities=38% Similarity=0.629 Sum_probs=35.3
Q ss_pred ccccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCCCCC
Q 047339 4 VEKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGLRG 42 (115)
Q Consensus 4 ~~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~~~~ 42 (115)
.++||+|||+|.+|+++|+.++++|.+|+|+||....++
T Consensus 10 ~~~DVvVVG~G~AGl~AA~~aae~G~~VivlEk~~~~gG 48 (584)
T PRK12835 10 REVDVLVVGSGGGGMTAALTAAARGLDTLVVEKSAHFGG 48 (584)
T ss_pred CcCCEEEECccHHHHHHHHHHHHCCCcEEEEEcCCCCCc
Confidence 468999999999999999999999999999999876543
No 194
>PLN02546 glutathione reductase
Probab=98.64 E-value=5.5e-08 Score=70.78 Aligned_cols=33 Identities=27% Similarity=0.377 Sum_probs=31.3
Q ss_pred ccccEEEECCCHHHHHHHHHHHHCCCceEEEcC
Q 047339 4 VEKDVVIIGAGIAGLATALALKRLGIKPLVLEK 36 (115)
Q Consensus 4 ~~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~ 36 (115)
.+||++|||+||+|+.+|..+++.|.+|+|+|+
T Consensus 78 ~~yDvvVIG~GpaG~~aA~~aa~~G~~V~liE~ 110 (558)
T PLN02546 78 YDFDLFTIGAGSGGVRASRFASNFGASAAVCEL 110 (558)
T ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCeEEEEec
Confidence 358999999999999999999999999999996
No 195
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=98.63 E-value=7.8e-08 Score=68.72 Aligned_cols=38 Identities=45% Similarity=0.658 Sum_probs=34.6
Q ss_pred cccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCCCCC
Q 047339 5 EKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGLRG 42 (115)
Q Consensus 5 ~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~~~~ 42 (115)
.++|+|||+|++|+++|..|++.|++|+|+|+.+..++
T Consensus 143 ~~~VvIIGaGpAGl~aA~~l~~~G~~V~vie~~~~~GG 180 (471)
T PRK12810 143 GKKVAVVGSGPAGLAAADQLARAGHKVTVFERADRIGG 180 (471)
T ss_pred CCEEEEECcCHHHHHHHHHHHhCCCcEEEEecCCCCCc
Confidence 47899999999999999999999999999999877643
No 196
>KOG3855 consensus Monooxygenase involved in coenzyme Q (ubiquinone) biosynthesis [Coenzyme transport and metabolism; Energy production and conversion]
Probab=98.63 E-value=2.8e-07 Score=64.18 Aligned_cols=79 Identities=27% Similarity=0.367 Sum_probs=61.3
Q ss_pred ccccEEEECCCHHHHHHHHHHHHC----CCceEEEcCCCCC--CC-------cceeeeeCccHHHHHHHcCChHHHhcc-
Q 047339 4 VEKDVVIIGAGIAGLATALALKRL----GIKPLVLEKSDGL--RG-------TGAAINFAPNAWLALDALGVSHKLASI- 69 (115)
Q Consensus 4 ~~~~v~IvG~G~~Gl~~A~~l~~~----g~~v~viE~~~~~--~~-------~~~~~~~~~~~~~~l~~~g~~~~i~~~- 69 (115)
.++||+||||||+|+++|..|..+ ..+|.++|....+ +. .-+-..+++.....++.+|+|+.+...
T Consensus 35 ~~~dVvIvGgGpvg~aLAa~l~snp~~~~~kv~Lld~~~s~kl~~~~~~~~f~Nrvss~s~~s~~~fk~~~awd~i~~~R 114 (481)
T KOG3855|consen 35 AKYDVVIVGGGPVGLALAAALGSNPPFQDKKVLLLDAGDSPKLGDFKPSETFSNRVSSISPASISLFKSIGAWDHIFHDR 114 (481)
T ss_pred ccCCEEEECCchHHHHHHHHhccCCccchheeeEEecccCccccccccCccccceeecCCcchHHHHHhcCHHHHhhhhc
Confidence 479999999999999999999864 3689999976322 11 224467788899999999999999864
Q ss_pred cCCcceEEEEECC
Q 047339 70 YDPVKRLFVTNLR 82 (115)
Q Consensus 70 ~~~~~~~~~~~~~ 82 (115)
..++++..+++.-
T Consensus 115 ~~~~~~~~v~Ds~ 127 (481)
T KOG3855|consen 115 YQKFSRMLVWDSC 127 (481)
T ss_pred cccccceeeeccc
Confidence 5667777777644
No 197
>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated
Probab=98.63 E-value=5.4e-08 Score=74.10 Aligned_cols=35 Identities=20% Similarity=0.354 Sum_probs=32.1
Q ss_pred ccccEEEECCCHHHHHHHHHHHHCCCceEEEcCCC
Q 047339 4 VEKDVVIIGAGIAGLATALALKRLGIKPLVLEKSD 38 (115)
Q Consensus 4 ~~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~ 38 (115)
..++|+|||+||+|+++|+.|++.|++|+|+|+.+
T Consensus 382 tgKKVaVVGaGPAGLsAA~~La~~Gh~Vtv~E~~~ 416 (1028)
T PRK06567 382 TNYNILVTGLGPAGFSLSYYLLRSGHNVTAIDGLK 416 (1028)
T ss_pred CCCeEEEECcCHHHHHHHHHHHhCCCeEEEEcccc
Confidence 35799999999999999999999999999999753
No 198
>PRK06134 putative FAD-binding dehydrogenase; Reviewed
Probab=98.63 E-value=9.8e-08 Score=69.83 Aligned_cols=40 Identities=40% Similarity=0.644 Sum_probs=35.6
Q ss_pred CccccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCCCCC
Q 047339 3 TVEKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGLRG 42 (115)
Q Consensus 3 ~~~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~~~~ 42 (115)
+.++||+|||+|++|+++|+.+++.|.+|+|+|+.+..++
T Consensus 10 ~~~~dvvvvG~G~aG~~aa~~~~~~g~~v~~iek~~~~gg 49 (581)
T PRK06134 10 DLECDVLVIGSGAAGLSAAVTAAWHGLKVIVVEKDPVFGG 49 (581)
T ss_pred CCccCEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCCCc
Confidence 3578999999999999999999999999999999876433
No 199
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=98.62 E-value=8e-08 Score=68.38 Aligned_cols=38 Identities=39% Similarity=0.524 Sum_probs=34.6
Q ss_pred ccccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCCCC
Q 047339 4 VEKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGLR 41 (115)
Q Consensus 4 ~~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~~~ 41 (115)
..++|+|||||++|+.+|..|++.|++|+|+|+.+..+
T Consensus 139 ~~~~VvIIGgGpaGl~aA~~l~~~g~~V~lie~~~~~g 176 (457)
T PRK11749 139 TGKKVAVIGAGPAGLTAAHRLARKGYDVTIFEARDKAG 176 (457)
T ss_pred CCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCCCC
Confidence 35799999999999999999999999999999987654
No 200
>PTZ00153 lipoamide dehydrogenase; Provisional
Probab=98.62 E-value=9e-08 Score=70.80 Aligned_cols=49 Identities=33% Similarity=0.546 Sum_probs=40.2
Q ss_pred ccccEEEECCCHHHHHHHHHHHHCCCceEEEcCCC-CCCCcceeeeeCcc
Q 047339 4 VEKDVVIIGAGIAGLATALALKRLGIKPLVLEKSD-GLRGTGAAINFAPN 52 (115)
Q Consensus 4 ~~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~-~~~~~~~~~~~~~~ 52 (115)
.+||++|||+|++|..+|..+++.|.+|+|+|+.. ..++.+-+..+-|.
T Consensus 115 ~~yDviVIG~G~gG~~aA~~aa~~G~kV~lie~~~~~lGGtCvn~GCiPs 164 (659)
T PTZ00153 115 EEYDVGIIGCGVGGHAAAINAMERGLKVIIFTGDDDSIGGTCVNVGCIPS 164 (659)
T ss_pred ccCCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCccccceeEeCCcch
Confidence 46899999999999999999999999999999753 45666665555543
No 201
>PRK08275 putative oxidoreductase; Provisional
Probab=98.62 E-value=7.4e-08 Score=70.10 Aligned_cols=36 Identities=39% Similarity=0.642 Sum_probs=33.0
Q ss_pred ccccEEEECCCHHHHHHHHHHHHC--CCceEEEcCCCC
Q 047339 4 VEKDVVIIGAGIAGLATALALKRL--GIKPLVLEKSDG 39 (115)
Q Consensus 4 ~~~~v~IvG~G~~Gl~~A~~l~~~--g~~v~viE~~~~ 39 (115)
+++||+|||+|.+||++|+.+++. |.+|+|+||.+.
T Consensus 8 ~~~DVlVIG~G~AGl~AAi~aa~~g~g~~VilveK~~~ 45 (554)
T PRK08275 8 VETDILVIGGGTAGPMAAIKAKERNPALRVLLLEKANV 45 (554)
T ss_pred EecCEEEECcCHHHHHHHHHHHHhCCCCeEEEEeCCCC
Confidence 568999999999999999999986 689999999875
No 202
>TIGR01812 sdhA_frdA_Gneg succinate dehydrogenase or fumarate reductase, flavoprotein subunitGram-negative/mitochondrial subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in Gram-negative bacteria, mitochondria, and some Archaea. Mitochondrial forms interact with ubiquinone and are designated EC 1.3.5.1, but can be degraded to 1.3.99.1. Some isozymes in E. coli and other species run primarily in the opposite direction and are designated fumarate reductase.
Probab=98.61 E-value=7.3e-08 Score=70.23 Aligned_cols=34 Identities=41% Similarity=0.648 Sum_probs=31.8
Q ss_pred cEEEECCCHHHHHHHHHHHHCCCceEEEcCCCCC
Q 047339 7 DVVIIGAGIAGLATALALKRLGIKPLVLEKSDGL 40 (115)
Q Consensus 7 ~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~~ 40 (115)
||+|||+|++|+++|+.+++.|.+|+|+||....
T Consensus 1 DVlVVG~G~AGl~AA~~aae~G~~V~lleK~~~~ 34 (566)
T TIGR01812 1 DVVIVGAGLAGLRAAVEAAKAGLNTAVISKVYPT 34 (566)
T ss_pred CEEEECccHHHHHHHHHHHHCCCcEEEEeccCCC
Confidence 7999999999999999999999999999997653
No 203
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=98.61 E-value=7.2e-08 Score=69.62 Aligned_cols=34 Identities=32% Similarity=0.505 Sum_probs=31.5
Q ss_pred ccccEEEECCCHHHHHHHHHHHHCCCceEEEcCC
Q 047339 4 VEKDVVIIGAGIAGLATALALKRLGIKPLVLEKS 37 (115)
Q Consensus 4 ~~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~ 37 (115)
..+|++||||||+|+++|.+|++.|++|+|++..
T Consensus 210 ~~~dvvIIGgGpaGl~aA~~la~~G~~v~li~~~ 243 (517)
T PRK15317 210 DPYDVLVVGGGPAGAAAAIYAARKGIRTGIVAER 243 (517)
T ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCcEEEEecC
Confidence 4689999999999999999999999999999764
No 204
>PLN02529 lysine-specific histone demethylase 1
Probab=98.61 E-value=9.6e-08 Score=71.29 Aligned_cols=40 Identities=45% Similarity=0.663 Sum_probs=35.8
Q ss_pred ccccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCCCCCc
Q 047339 4 VEKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGLRGT 43 (115)
Q Consensus 4 ~~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~~~~~ 43 (115)
.+++|+|||||++|+++|..|+++|++|+|+|+.+..++.
T Consensus 159 ~~~~v~viGaG~aGl~aA~~l~~~g~~v~v~E~~~~~GG~ 198 (738)
T PLN02529 159 TEGSVIIVGAGLAGLAAARQLLSFGFKVVVLEGRNRPGGR 198 (738)
T ss_pred CCCCEEEECcCHHHHHHHHHHHHcCCcEEEEecCccCcCc
Confidence 3579999999999999999999999999999998876543
No 205
>PRK05329 anaerobic glycerol-3-phosphate dehydrogenase subunit B; Validated
Probab=98.61 E-value=7.8e-08 Score=67.83 Aligned_cols=35 Identities=37% Similarity=0.628 Sum_probs=32.8
Q ss_pred ccccEEEECCCHHHHHHHHHHHHCCCceEEEcCCC
Q 047339 4 VEKDVVIIGAGIAGLATALALKRLGIKPLVLEKSD 38 (115)
Q Consensus 4 ~~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~ 38 (115)
|++||+|||+|++|+++|+.|+++|.+|+|+|+..
T Consensus 1 ~~~DviIIG~G~aGl~aA~~la~~g~~v~vi~~~~ 35 (422)
T PRK05329 1 MKFDVLVIGGGLAGLTAALAAAEAGKRVALVAKGQ 35 (422)
T ss_pred CCCCEEEECccHHHHHHHHHHHHCCCcEEEEECCC
Confidence 46899999999999999999999999999999864
No 206
>TIGR02462 pyranose_ox pyranose oxidase. Pyranose oxidase (also called glucose 2-oxidase) converts D-glucose and molecular oxygen to 2-dehydro-D-glucose and hydrogen peroxide. Peroxide production is believed to be important to the wood rot fungi in which this enzyme is found for lignin degradation.
Probab=98.60 E-value=1.4e-07 Score=68.43 Aligned_cols=38 Identities=26% Similarity=0.201 Sum_probs=34.8
Q ss_pred ccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCCCCCc
Q 047339 6 KDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGLRGT 43 (115)
Q Consensus 6 ~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~~~~~ 43 (115)
+||+|||+||+|+++|..|+++|++|+++|+....+..
T Consensus 1 ~dv~ivg~Gp~G~~~a~~l~~~g~~v~~~e~~~~~~~~ 38 (544)
T TIGR02462 1 YDVFIAGSGPIGCTYARLCVDAGLKVAMVEIGAADSFL 38 (544)
T ss_pred CcEEEECCchHHHHHHHHHHHCCCeEEEEeccCccCCC
Confidence 59999999999999999999999999999998876543
No 207
>PLN02676 polyamine oxidase
Probab=98.60 E-value=1.2e-07 Score=68.05 Aligned_cols=38 Identities=39% Similarity=0.742 Sum_probs=34.8
Q ss_pred cccEEEECCCHHHHHHHHHHHHCCC-ceEEEcCCCCCCC
Q 047339 5 EKDVVIIGAGIAGLATALALKRLGI-KPLVLEKSDGLRG 42 (115)
Q Consensus 5 ~~~v~IvG~G~~Gl~~A~~l~~~g~-~v~viE~~~~~~~ 42 (115)
.+||+|||||++||++|+.|+++|. +|+|+|+....++
T Consensus 26 ~~~v~IIGaG~sGL~aa~~L~~~g~~~v~vlE~~~~~GG 64 (487)
T PLN02676 26 SPSVIIVGAGMSGISAAKTLSEAGIEDILILEATDRIGG 64 (487)
T ss_pred CCCEEEECCCHHHHHHHHHHHHcCCCcEEEecCCCCCCC
Confidence 5799999999999999999999998 6999999887655
No 208
>PRK09231 fumarate reductase flavoprotein subunit; Validated
Probab=98.60 E-value=8.3e-08 Score=70.22 Aligned_cols=39 Identities=36% Similarity=0.492 Sum_probs=34.2
Q ss_pred CCccccEEEECCCHHHHHHHHHHHHC--CCceEEEcCCCCC
Q 047339 2 ETVEKDVVIIGAGIAGLATALALKRL--GIKPLVLEKSDGL 40 (115)
Q Consensus 2 ~~~~~~v~IvG~G~~Gl~~A~~l~~~--g~~v~viE~~~~~ 40 (115)
++.++||+|||+|.+||++|+.+++. |.+|+|+||....
T Consensus 1 ~t~~~DVlVVG~G~AGl~AAi~Aa~~g~g~~V~lleK~~~~ 41 (582)
T PRK09231 1 QTFQADLAIIGAGGAGLRAAIAAAEANPNLKIALISKVYPM 41 (582)
T ss_pred CceeeeEEEECccHHHHHHHHHHHHhCCCCcEEEEEccCCC
Confidence 35678999999999999999999987 4899999998654
No 209
>PRK08401 L-aspartate oxidase; Provisional
Probab=98.60 E-value=7e-08 Score=68.87 Aligned_cols=34 Identities=29% Similarity=0.516 Sum_probs=32.1
Q ss_pred ccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCC
Q 047339 6 KDVVIIGAGIAGLATALALKRLGIKPLVLEKSDG 39 (115)
Q Consensus 6 ~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~ 39 (115)
+||+|||+|++||++|+.+++.|.+|+|+||...
T Consensus 2 ~DVvVVGaG~AGl~AAi~aae~G~~V~liek~~~ 35 (466)
T PRK08401 2 MKVGIVGGGLAGLTAAISLAKKGFDVTIIGPGIK 35 (466)
T ss_pred CeEEEECccHHHHHHHHHHHHCCCeEEEEeCCCC
Confidence 7999999999999999999999999999999754
No 210
>PLN02328 lysine-specific histone demethylase 1 homolog
Probab=98.60 E-value=7.2e-08 Score=72.46 Aligned_cols=40 Identities=40% Similarity=0.595 Sum_probs=35.9
Q ss_pred ccccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCCCCCc
Q 047339 4 VEKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGLRGT 43 (115)
Q Consensus 4 ~~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~~~~~ 43 (115)
.+.+|+|||||++|+.+|+.|++.|++|+|+|++..+++.
T Consensus 237 ~~~~v~IiGaG~aGl~aA~~L~~~g~~v~v~E~~~r~GGr 276 (808)
T PLN02328 237 EPANVVVVGAGLAGLVAARQLLSMGFKVVVLEGRARPGGR 276 (808)
T ss_pred CCCCEEEECcCHHHHHHHHHHHHCCCcEEEEeccccCCCc
Confidence 3578999999999999999999999999999998877543
No 211
>PRK08205 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.60 E-value=1e-07 Score=69.79 Aligned_cols=39 Identities=36% Similarity=0.404 Sum_probs=34.2
Q ss_pred CCCccccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCCC
Q 047339 1 METVEKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGL 40 (115)
Q Consensus 1 m~~~~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~~ 40 (115)
|...++||+|||+|.+||++|+.+++. .+|+|+||....
T Consensus 1 ~~~~~~DVlVIG~G~AGl~AAl~aa~~-~~VilleK~~~~ 39 (583)
T PRK08205 1 MQQHRYDVVIVGAGGAGMRAAIEAGPR-ARTAVLTKLYPT 39 (583)
T ss_pred CcceeccEEEECccHHHHHHHHHHHhC-CCEEEEeCCCCC
Confidence 445678999999999999999999976 999999997643
No 212
>PRK08958 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.59 E-value=1.2e-07 Score=69.51 Aligned_cols=37 Identities=38% Similarity=0.418 Sum_probs=33.7
Q ss_pred ccccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCCC
Q 047339 4 VEKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGL 40 (115)
Q Consensus 4 ~~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~~ 40 (115)
.++||+|||+|.+||++|+.+++.|.+|+|+||....
T Consensus 6 ~~~DVlVVG~G~AGl~AAi~Aa~~G~~V~lleK~~~~ 42 (588)
T PRK08958 6 REFDAVVIGAGGAGMRAALQISQSGQSCALLSKVFPT 42 (588)
T ss_pred cccCEEEECccHHHHHHHHHHHHcCCcEEEEEccCCC
Confidence 4579999999999999999999999999999997553
No 213
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=98.59 E-value=9.3e-08 Score=69.03 Aligned_cols=33 Identities=30% Similarity=0.527 Sum_probs=30.9
Q ss_pred ccccEEEECCCHHHHHHHHHHHHCCCceEEEcC
Q 047339 4 VEKDVVIIGAGIAGLATALALKRLGIKPLVLEK 36 (115)
Q Consensus 4 ~~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~ 36 (115)
..+||+||||||+|+++|..|++.|++|+|++.
T Consensus 211 ~~~dVvIIGgGpAGl~AA~~la~~G~~v~li~~ 243 (515)
T TIGR03140 211 DPYDVLVVGGGPAGAAAAIYAARKGLRTAMVAE 243 (515)
T ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCcEEEEec
Confidence 458999999999999999999999999999975
No 214
>KOG1276 consensus Protoporphyrinogen oxidase [Coenzyme transport and metabolism]
Probab=98.59 E-value=1.6e-07 Score=65.64 Aligned_cols=66 Identities=29% Similarity=0.399 Sum_probs=48.0
Q ss_pred ccccEEEECCCHHHHHHHHHHHHCCCce--EEEcCCCCCCCccee-----eee--------C---c---cHHHHHHHcCC
Q 047339 4 VEKDVVIIGAGIAGLATALALKRLGIKP--LVLEKSDGLRGTGAA-----INF--------A---P---NAWLALDALGV 62 (115)
Q Consensus 4 ~~~~v~IvG~G~~Gl~~A~~l~~~g~~v--~viE~~~~~~~~~~~-----~~~--------~---~---~~~~~l~~~g~ 62 (115)
+.++++|||||++||++|++|++.+-++ +|+|+.+..++.-+. ..+ . + +.++.+..+|+
T Consensus 10 ~~~~vaVvGGGiSGL~aay~L~r~~p~~~i~l~Ea~~RvGGwirS~r~~ng~ifE~GPrtlrpag~~g~~~l~lv~dLGl 89 (491)
T KOG1276|consen 10 SGMTVAVVGGGISGLCAAYYLARLGPDVTITLFEASPRVGGWIRSDRMQNGFIFEEGPRTLRPAGPGGAETLDLVSDLGL 89 (491)
T ss_pred ecceEEEECCchhHHHHHHHHHhcCCCceEEEEecCCcccceeeeccCCCceeeccCCCccCcCCcchhHHHHHHHHcCc
Confidence 4579999999999999999999998665 569998877553222 111 1 1 35677888998
Q ss_pred hHHHhcc
Q 047339 63 SHKLASI 69 (115)
Q Consensus 63 ~~~i~~~ 69 (115)
.+++...
T Consensus 90 ~~e~~~i 96 (491)
T KOG1276|consen 90 EDELQPI 96 (491)
T ss_pred cceeeec
Confidence 8776543
No 215
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=98.58 E-value=1.2e-07 Score=70.21 Aligned_cols=38 Identities=39% Similarity=0.549 Sum_probs=34.6
Q ss_pred cccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCCCCC
Q 047339 5 EKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGLRG 42 (115)
Q Consensus 5 ~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~~~~ 42 (115)
.++|+|||+||+|+++|..|++.|++|+|+|+.+.+++
T Consensus 193 ~k~VaIIGaGpAGl~aA~~La~~G~~Vtv~e~~~~~GG 230 (652)
T PRK12814 193 GKKVAIIGAGPAGLTAAYYLLRKGHDVTIFDANEQAGG 230 (652)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCc
Confidence 46899999999999999999999999999999877643
No 216
>PTZ00306 NADH-dependent fumarate reductase; Provisional
Probab=98.58 E-value=1.1e-07 Score=74.29 Aligned_cols=40 Identities=30% Similarity=0.598 Sum_probs=36.3
Q ss_pred CccccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCCCCC
Q 047339 3 TVEKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGLRG 42 (115)
Q Consensus 3 ~~~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~~~~ 42 (115)
+.+.||+|||+|.+|+++|+.+++.|.+|+|+||.+..++
T Consensus 407 t~~~DVvVVG~G~AGl~AAi~Aae~Ga~VivlEK~~~~GG 446 (1167)
T PTZ00306 407 SLPARVIVVGGGLAGCSAAIEAASCGAQVILLEKEAKLGG 446 (1167)
T ss_pred CCCCCEEEECCCHHHHHHHHHHHHCCCcEEEEEccCCCCC
Confidence 5678999999999999999999999999999999876544
No 217
>PF01134 GIDA: Glucose inhibited division protein A; InterPro: IPR002218 GidA is a tRNA modification enzyme found in bacteria and mitochondria. Though its precise molecular function of these proteins is not known, it is involved in the 5-carboxymethylaminomethyl modification of the wobble uridine base in some tRNAs [, ]. Sequence variations in the human mitochondrial protein may influence the severity of aminoglycoside-induced deafness []. This entry is found in GidA and related proteins, such as the methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase enzyme TrmFO.; GO: 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing; PDB: 3CES_C 3CP2_A 3G05_A 2CUL_A 3CP8_A 2ZXI_B 2ZXH_A 3G5S_A 3G5R_A 3G5Q_A.
Probab=98.58 E-value=1e-07 Score=66.42 Aligned_cols=35 Identities=40% Similarity=0.720 Sum_probs=27.9
Q ss_pred cEEEECCCHHHHHHHHHHHHCCCceEEE-cCCCCCC
Q 047339 7 DVVIIGAGIAGLATALALKRLGIKPLVL-EKSDGLR 41 (115)
Q Consensus 7 ~v~IvG~G~~Gl~~A~~l~~~g~~v~vi-E~~~~~~ 41 (115)
||+|||||+||+.+|+.+++.|.+|+|+ ++.+...
T Consensus 1 DViVVGgG~AG~eAA~aaAr~G~~V~Lit~~~d~i~ 36 (392)
T PF01134_consen 1 DVIVVGGGHAGCEAALAAARMGAKVLLITHNTDTIG 36 (392)
T ss_dssp EEEEESSSHHHHHHHHHHHHTT--EEEEES-GGGTT
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEeecccccc
Confidence 7999999999999999999999999999 3433343
No 218
>PLN02815 L-aspartate oxidase
Probab=98.58 E-value=1.1e-07 Score=69.74 Aligned_cols=37 Identities=32% Similarity=0.504 Sum_probs=33.4
Q ss_pred ccccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCCCC
Q 047339 4 VEKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGLR 41 (115)
Q Consensus 4 ~~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~~~ 41 (115)
.++||+|||+|.+||++|+.+++.| +|+|+||....+
T Consensus 28 ~~~DVlVVG~G~AGl~AAl~Aae~G-~VvlleK~~~~g 64 (594)
T PLN02815 28 KYFDFLVIGSGIAGLRYALEVAEYG-TVAIITKDEPHE 64 (594)
T ss_pred cccCEEEECccHHHHHHHHHHhhCC-CEEEEECCCCCC
Confidence 4689999999999999999999999 999999987643
No 219
>PRK13339 malate:quinone oxidoreductase; Reviewed
Probab=98.58 E-value=1e-07 Score=68.46 Aligned_cols=37 Identities=38% Similarity=0.482 Sum_probs=33.0
Q ss_pred ccccEEEECCCHHHHHHHHHHHHC--CCceEEEcCCCCC
Q 047339 4 VEKDVVIIGAGIAGLATALALKRL--GIKPLVLEKSDGL 40 (115)
Q Consensus 4 ~~~~v~IvG~G~~Gl~~A~~l~~~--g~~v~viE~~~~~ 40 (115)
..+||+|||||++|+++|+.|++. +.+|+|+||.+.+
T Consensus 5 ~~~DvvIIGgGI~G~sla~~L~~~~~~~~V~vlEr~~~~ 43 (497)
T PRK13339 5 ESKDVVLVGAGILSTTFGVLLKELDPDWNIEVVERLDSP 43 (497)
T ss_pred ccCCEEEECchHHHHHHHHHHHhCCCCCeEEEEEcCCCc
Confidence 457999999999999999999998 8999999994444
No 220
>TIGR00551 nadB L-aspartate oxidase. L-aspartate oxidase is the B protein, NadB, of the quinolinate synthetase complex. Quinolinate synthetase makes a precursor of the pyridine nucleotide portion of NAD. This model identifies proteins that cluster as L-aspartate oxidase (a flavoprotein difficult to separate from the set of closely related flavoprotein subunits of succinate dehydrogenase and fumarate reductase) by both UPGMA and neighbor-joining trees. The most distant protein accepted as an L-aspartate oxidase (NadB), that from Pyrococcus horikoshii, not only clusters with other NadB but is just one gene away from NadA.
Probab=98.56 E-value=1.4e-07 Score=67.73 Aligned_cols=35 Identities=49% Similarity=0.634 Sum_probs=32.0
Q ss_pred cccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCCC
Q 047339 5 EKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGL 40 (115)
Q Consensus 5 ~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~~ 40 (115)
++||+|||+|++||++|+.+++.|. |+|+||.+..
T Consensus 2 ~~DVlVVG~G~AGl~AA~~aa~~G~-V~lleK~~~~ 36 (488)
T TIGR00551 2 SCDVVVIGSGAAGLSAALALADQGR-VIVLSKAPVT 36 (488)
T ss_pred CccEEEECccHHHHHHHHHHHhCCC-EEEEEccCCC
Confidence 5799999999999999999999998 9999998654
No 221
>PRK07395 L-aspartate oxidase; Provisional
Probab=98.56 E-value=1.3e-07 Score=68.90 Aligned_cols=38 Identities=29% Similarity=0.406 Sum_probs=33.4
Q ss_pred CccccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCCCC
Q 047339 3 TVEKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGLR 41 (115)
Q Consensus 3 ~~~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~~~ 41 (115)
+.++||+|||+|.+|+++|+.++ .|.+|+|+||.+..+
T Consensus 7 ~~e~DVlVVG~G~AGl~AAi~A~-~G~~V~lieK~~~~g 44 (553)
T PRK07395 7 PSQFDVLVVGSGAAGLYAALCLP-SHLRVGLITKDTLKT 44 (553)
T ss_pred cccCCEEEECccHHHHHHHHHhh-cCCCEEEEEccCCCC
Confidence 45789999999999999999986 599999999987643
No 222
>PRK05945 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.56 E-value=1.1e-07 Score=69.44 Aligned_cols=37 Identities=43% Similarity=0.738 Sum_probs=32.7
Q ss_pred ccccEEEECCCHHHHHHHHHHHHC--CCceEEEcCCCCC
Q 047339 4 VEKDVVIIGAGIAGLATALALKRL--GIKPLVLEKSDGL 40 (115)
Q Consensus 4 ~~~~v~IvG~G~~Gl~~A~~l~~~--g~~v~viE~~~~~ 40 (115)
.++||+|||+|.+||++|+.+++. |.+|+|+||....
T Consensus 2 ~~~DVlVIG~G~AGl~AAi~aa~~g~g~~V~vleK~~~~ 40 (575)
T PRK05945 2 LEHDVVIVGGGLAGCRAALEIKRLDPSLDVAVVAKTHPI 40 (575)
T ss_pred CcccEEEECccHHHHHHHHHHHHhcCCCcEEEEeccCCC
Confidence 457999999999999999999987 4899999997653
No 223
>PRK09077 L-aspartate oxidase; Provisional
Probab=98.55 E-value=1.5e-07 Score=68.24 Aligned_cols=37 Identities=41% Similarity=0.453 Sum_probs=33.0
Q ss_pred CccccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCCC
Q 047339 3 TVEKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGL 40 (115)
Q Consensus 3 ~~~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~~ 40 (115)
+.++||+|||+|.+||++|+.+++. .+|+|+||....
T Consensus 6 ~~~~DVlVVG~G~AGl~AA~~aa~~-~~VilveK~~~~ 42 (536)
T PRK09077 6 EHQCDVLIIGSGAAGLSLALRLAEH-RRVAVLSKGPLS 42 (536)
T ss_pred cccCCEEEECchHHHHHHHHHHHHC-CCEEEEeccCCC
Confidence 3568999999999999999999886 899999998754
No 224
>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein. This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.
Probab=98.55 E-value=1.5e-07 Score=67.56 Aligned_cols=33 Identities=33% Similarity=0.565 Sum_probs=31.5
Q ss_pred cccEEEECCCHHHHHHHHHHHHCCCceEEEcCC
Q 047339 5 EKDVVIIGAGIAGLATALALKRLGIKPLVLEKS 37 (115)
Q Consensus 5 ~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~ 37 (115)
++|++|||+||+|+.+|+.+++.|.+|.++|+.
T Consensus 2 ~yDvvVIG~G~aG~~aA~~aa~~G~~v~lie~~ 34 (484)
T TIGR01438 2 DYDLIVIGGGSGGLAAAKEAADYGAKVMLLDFV 34 (484)
T ss_pred ccCEEEECCCHHHHHHHHHHHHCCCeEEEEecc
Confidence 689999999999999999999999999999974
No 225
>PRK12839 hypothetical protein; Provisional
Probab=98.55 E-value=1.7e-07 Score=68.49 Aligned_cols=40 Identities=43% Similarity=0.575 Sum_probs=35.9
Q ss_pred CccccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCCCCC
Q 047339 3 TVEKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGLRG 42 (115)
Q Consensus 3 ~~~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~~~~ 42 (115)
+.++||+|||+|.+|+++|+.+++.|.+|+|+|+....++
T Consensus 6 ~~~~dv~ViG~G~aG~~aa~~~~~~g~~v~~iek~~~~gg 45 (572)
T PRK12839 6 THTYDVVVVGSGAGGLSAAVAAAYGGAKVLVVEKASTCGG 45 (572)
T ss_pred CCcCCEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCc
Confidence 4578999999999999999999999999999999876543
No 226
>COG1053 SdhA Succinate dehydrogenase/fumarate reductase, flavoprotein subunit [Energy production and conversion]
Probab=98.54 E-value=1.8e-07 Score=68.15 Aligned_cols=41 Identities=41% Similarity=0.535 Sum_probs=36.8
Q ss_pred CCCccccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCCCC
Q 047339 1 METVEKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGLR 41 (115)
Q Consensus 1 m~~~~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~~~ 41 (115)
|...++||+|||+|.+||.+|+.++..|.+|.|+||....+
T Consensus 2 ~~~~~~DvvVIG~G~AGl~AAi~aa~~g~~V~l~~K~~~~r 42 (562)
T COG1053 2 MTIHEFDVVVIGGGGAGLRAAIEAAEAGLKVALLSKAPPKR 42 (562)
T ss_pred cccccCCEEEECCcHHHHHHHHHHHhcCCcEEEEEccccCC
Confidence 45678999999999999999999999999999999977653
No 227
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=98.54 E-value=2e-07 Score=66.65 Aligned_cols=38 Identities=42% Similarity=0.649 Sum_probs=34.5
Q ss_pred cccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCCCCC
Q 047339 5 EKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGLRG 42 (115)
Q Consensus 5 ~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~~~~ 42 (115)
..+|+|||+||+|+++|..|++.|++|+|+|+.+.+++
T Consensus 141 ~~~V~IIG~GpaGl~aA~~l~~~G~~V~i~e~~~~~gG 178 (467)
T TIGR01318 141 GKRVAVIGAGPAGLACADILARAGVQVVVFDRHPEIGG 178 (467)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCc
Confidence 47899999999999999999999999999999877643
No 228
>PRK06263 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.53 E-value=1.3e-07 Score=68.62 Aligned_cols=35 Identities=31% Similarity=0.396 Sum_probs=32.4
Q ss_pred ccccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCC
Q 047339 4 VEKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDG 39 (115)
Q Consensus 4 ~~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~ 39 (115)
.++||+|||+|.+||++|+.+ +.|.+|+|+||...
T Consensus 6 ~~~DVlVVG~G~AGl~AAi~A-~~G~~VilleK~~~ 40 (543)
T PRK06263 6 MITDVLIIGSGGAGARAAIEA-ERGKNVVIVSKGLF 40 (543)
T ss_pred eccCEEEECccHHHHHHHHHH-hcCCCEEEEEccCC
Confidence 568999999999999999999 89999999999754
No 229
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=98.52 E-value=2.3e-07 Score=68.62 Aligned_cols=37 Identities=35% Similarity=0.537 Sum_probs=34.4
Q ss_pred cccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCCCC
Q 047339 5 EKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGLR 41 (115)
Q Consensus 5 ~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~~~ 41 (115)
..+|+|||+||+|+++|..|++.|++|+|+|+.+.++
T Consensus 310 ~kkVaIIG~GpaGl~aA~~L~~~G~~Vtv~e~~~~~G 346 (639)
T PRK12809 310 SEKVAVIGAGPAGLGCADILARAGVQVDVFDRHPEIG 346 (639)
T ss_pred CCEEEEECcCHHHHHHHHHHHHcCCcEEEEeCCCCCC
Confidence 5789999999999999999999999999999988764
No 230
>TIGR01176 fum_red_Fp fumarate reductase, flavoprotein subunit. The terms succinate dehydrogenase and fumarate reductase may be used interchangeably in certain systems. However, a number of species have distinct complexes, with the fumarate reductase active under anaerobic conditions. This model represents the fumarate reductase flavoprotein subunit from several such species in which a distinct succinate dehydrogenase is also found. Not all bona fide fumarate reductases will be found by this model.
Probab=98.52 E-value=1.9e-07 Score=68.31 Aligned_cols=38 Identities=32% Similarity=0.490 Sum_probs=33.3
Q ss_pred ccccEEEECCCHHHHHHHHHHHHC--CCceEEEcCCCCCC
Q 047339 4 VEKDVVIIGAGIAGLATALALKRL--GIKPLVLEKSDGLR 41 (115)
Q Consensus 4 ~~~~v~IvG~G~~Gl~~A~~l~~~--g~~v~viE~~~~~~ 41 (115)
.++||+|||+|++||++|+.+++. |.+|+|+||....+
T Consensus 2 ~~~DVlVIG~G~AGl~AAl~aa~~g~g~~V~lveK~~~~~ 41 (580)
T TIGR01176 2 AQHDIAVIGAGGAGLRAAIAAAEANPHLDVALISKVYPMR 41 (580)
T ss_pred cceeEEEECccHHHHHHHHHHHHhCCCCcEEEEEccCCCC
Confidence 468999999999999999999986 58999999986543
No 231
>TIGR00275 flavoprotein, HI0933 family. The model when searched with a partial length search brings in proteins with a dinucleotide-binding motif (Rossman fold) over the initial 40 residues of the model, including oxidoreductases and dehydrogenases. Partially characterized members include an FAD-binding protein from Bacillus cereus and flavoprotein HI0933 from Haemophilus influenzae.
Probab=98.50 E-value=1.1e-07 Score=66.74 Aligned_cols=33 Identities=42% Similarity=0.701 Sum_probs=30.7
Q ss_pred EEECCCHHHHHHHHHHHHCCCceEEEcCCCCCC
Q 047339 9 VIIGAGIAGLATALALKRLGIKPLVLEKSDGLR 41 (115)
Q Consensus 9 ~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~~~ 41 (115)
+|||||++|+++|+.|+++|++|+|+|+++..+
T Consensus 1 vIIGgG~aGl~aAi~aa~~G~~V~llEk~~~~G 33 (400)
T TIGR00275 1 IIIGGGAAGLMAAITAAREGLSVLLLEKNKKIG 33 (400)
T ss_pred CEEEEeHHHHHHHHHHHhcCCcEEEEecCcccc
Confidence 599999999999999999999999999988654
No 232
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=98.50 E-value=3.4e-07 Score=63.13 Aligned_cols=39 Identities=46% Similarity=0.488 Sum_probs=35.1
Q ss_pred ccccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCCCCC
Q 047339 4 VEKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGLRG 42 (115)
Q Consensus 4 ~~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~~~~ 42 (115)
...+|+|||+|++|+.+|..|++.|++|+++|+.+.+++
T Consensus 17 ~~~~VvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~~gg 55 (352)
T PRK12770 17 TGKKVAIIGAGPAGLAAAGYLACLGYEVHVYDKLPEPGG 55 (352)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCCCc
Confidence 457999999999999999999999999999999877643
No 233
>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated
Probab=98.49 E-value=2.7e-07 Score=65.75 Aligned_cols=33 Identities=27% Similarity=0.490 Sum_probs=31.0
Q ss_pred cEEEECCCHHHHHHHHHHHHCCCceEEEcCCCC
Q 047339 7 DVVIIGAGIAGLATALALKRLGIKPLVLEKSDG 39 (115)
Q Consensus 7 ~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~ 39 (115)
+++|||+||+|+.+|..+++.|.+|+|+|+...
T Consensus 2 ~vvVIG~G~aG~~aA~~~~~~g~~V~lie~~~~ 34 (458)
T PRK06912 2 KLVVIGGGPAGYVAAITAAQNGKNVTLIDEADL 34 (458)
T ss_pred eEEEECCCHHHHHHHHHHHhCCCcEEEEECCcc
Confidence 799999999999999999999999999998753
No 234
>PRK08071 L-aspartate oxidase; Provisional
Probab=98.46 E-value=3.2e-07 Score=66.25 Aligned_cols=36 Identities=33% Similarity=0.494 Sum_probs=32.3
Q ss_pred cccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCCCC
Q 047339 5 EKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGLR 41 (115)
Q Consensus 5 ~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~~~ 41 (115)
++||+|||+|.+||++|+.+++ |.+|+|+||.+..+
T Consensus 3 ~~DVlVVG~G~AGl~AAl~a~~-g~~V~lveK~~~~~ 38 (510)
T PRK08071 3 SADVIIIGSGIAALTVAKELCH-EYNVIIITKKTKRN 38 (510)
T ss_pred ccCEEEECccHHHHHHHHHhhc-CCCEEEEeccCCCC
Confidence 5799999999999999999976 89999999987643
No 235
>KOG0685 consensus Flavin-containing amine oxidase [Coenzyme transport and metabolism]
Probab=98.45 E-value=3.1e-07 Score=64.84 Aligned_cols=45 Identities=51% Similarity=0.696 Sum_probs=37.0
Q ss_pred cccEEEECCCHHHHHHHHHHHHCC-CceEEEcCCCCCCCcceeeee
Q 047339 5 EKDVVIIGAGIAGLATALALKRLG-IKPLVLEKSDGLRGTGAAINF 49 (115)
Q Consensus 5 ~~~v~IvG~G~~Gl~~A~~l~~~g-~~v~viE~~~~~~~~~~~~~~ 49 (115)
..+|+|||||++||++|..|.++| .+++|+|..+..+++-.++.+
T Consensus 21 ~~kIvIIGAG~AGLaAA~rLle~gf~~~~IlEa~dRIGGRI~ti~~ 66 (498)
T KOG0685|consen 21 NAKIVIIGAGIAGLAAATRLLENGFIDVLILEASDRIGGRIHTIPF 66 (498)
T ss_pred CceEEEECCchHHHHHHHHHHHhCCceEEEEEeccccCceEeeEEc
Confidence 468999999999999999998666 689999999988765554333
No 236
>COG3075 GlpB Anaerobic glycerol-3-phosphate dehydrogenase [Amino acid transport and metabolism]
Probab=98.44 E-value=3.5e-07 Score=62.23 Aligned_cols=36 Identities=36% Similarity=0.656 Sum_probs=33.4
Q ss_pred ccccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCC
Q 047339 4 VEKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDG 39 (115)
Q Consensus 4 ~~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~ 39 (115)
|++||+|||||++|++.|+.|+++|.++.|+.+.+.
T Consensus 1 M~fDv~IIGGGLAGltc~l~l~~~Gk~c~iv~~gQs 36 (421)
T COG3075 1 MNFDVAIIGGGLAGLTCGLALQQAGKRCAIVNRGQS 36 (421)
T ss_pred CcccEEEEcCcHHHHHHHHHHHhcCCcEEEEeCChh
Confidence 579999999999999999999999999999987664
No 237
>PRK12843 putative FAD-binding dehydrogenase; Reviewed
Probab=98.44 E-value=4.6e-07 Score=66.31 Aligned_cols=39 Identities=41% Similarity=0.669 Sum_probs=35.0
Q ss_pred ccccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCCCCC
Q 047339 4 VEKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGLRG 42 (115)
Q Consensus 4 ~~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~~~~ 42 (115)
.++||+|||+|++|+++|+.++++|++|+|+|+....++
T Consensus 15 ~~~dvvvvG~G~aG~~aa~~~~~~g~~v~l~ek~~~~gg 53 (578)
T PRK12843 15 AEFDVIVIGAGAAGMSAALFAAIAGLKVLLVERTEYVGG 53 (578)
T ss_pred CCCCEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCC
Confidence 467999999999999999999999999999999876543
No 238
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=98.43 E-value=4.3e-07 Score=66.28 Aligned_cols=38 Identities=39% Similarity=0.629 Sum_probs=34.4
Q ss_pred cccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCCCCC
Q 047339 5 EKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGLRG 42 (115)
Q Consensus 5 ~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~~~~ 42 (115)
..+|+|||+||+||++|..|++.|++|+|+|+.+..++
T Consensus 137 g~~V~VIGaGpaGL~aA~~l~~~G~~V~v~e~~~~~GG 174 (564)
T PRK12771 137 GKRVAVIGGGPAGLSAAYHLRRMGHAVTIFEAGPKLGG 174 (564)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCC
Confidence 36899999999999999999999999999999877643
No 239
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=98.43 E-value=3.4e-07 Score=69.97 Aligned_cols=36 Identities=39% Similarity=0.583 Sum_probs=33.5
Q ss_pred ccccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCC
Q 047339 4 VEKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDG 39 (115)
Q Consensus 4 ~~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~ 39 (115)
.++||+|||+|.+||++|+.+++.|.+|+|+||...
T Consensus 12 ~~~DVlVVG~G~AGl~AAl~Aa~~G~~V~lleK~~~ 47 (897)
T PRK13800 12 LDCDVLVIGGGTAGTMAALTAAEHGANVLLLEKAHV 47 (897)
T ss_pred eecCEEEECcCHHHHHHHHHHHHCCCeEEEEecccc
Confidence 468999999999999999999999999999998764
No 240
>TIGR02061 aprA adenosine phosphosulphate reductase, alpha subunit. During dissimilatory sulfate reduction or sulfur oxidation, adenylylsulfate (APS) reductase catalyzes reversibly the two-electron reduction of APS to sulfite and AMP. Found in several bacterial lineages and in Archaeoglobales, APS reductase is a heterodimer composed of an alpha subunit containing a noncovalently bound FAD, and a beta subunit containing two [4Fe-4S] clusters. Described by this model is the alpha subunit of APS reductase, sharing common evolutionary origin with fumarate reductase/succinate dehydrogenase flavoproteins.
Probab=98.42 E-value=4.5e-07 Score=66.75 Aligned_cols=33 Identities=30% Similarity=0.622 Sum_probs=30.5
Q ss_pred cEEEECCCHHHHHHHHHHH----HCCCceEEEcCCCC
Q 047339 7 DVVIIGAGIAGLATALALK----RLGIKPLVLEKSDG 39 (115)
Q Consensus 7 ~v~IvG~G~~Gl~~A~~l~----~~g~~v~viE~~~~ 39 (115)
||+|||+|.+||++|+.++ +.|.+|+|+||...
T Consensus 1 DVlVIGsG~AGL~AAl~Aa~~~~e~G~~VilieK~~~ 37 (614)
T TIGR02061 1 DLLIVGGGMGGCGAAFEAVYWGDKKGLKIVLVEKANL 37 (614)
T ss_pred CEEEECCCHHHHHHHHHHHhhhhhCCCeEEEEEccCC
Confidence 7999999999999999998 67999999999764
No 241
>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.
Probab=98.41 E-value=5.9e-07 Score=64.52 Aligned_cols=37 Identities=41% Similarity=0.553 Sum_probs=33.8
Q ss_pred cccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCCCC
Q 047339 5 EKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGLR 41 (115)
Q Consensus 5 ~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~~~ 41 (115)
..+|+|||+|++|+.+|..|++.|++|+|+|+.+.++
T Consensus 143 ~~~V~IIGaG~aGl~aA~~L~~~g~~V~v~e~~~~~g 179 (485)
T TIGR01317 143 GKKVAVVGSGPAGLAAADQLNRAGHTVTVFEREDRCG 179 (485)
T ss_pred CCEEEEECCcHHHHHHHHHHHHcCCeEEEEecCCCCC
Confidence 3699999999999999999999999999999887653
No 242
>KOG1335 consensus Dihydrolipoamide dehydrogenase [Energy production and conversion]
Probab=98.41 E-value=4.5e-07 Score=62.84 Aligned_cols=48 Identities=35% Similarity=0.567 Sum_probs=41.3
Q ss_pred ccccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCCCCCcceeeeeCc
Q 047339 4 VEKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGLRGTGAAINFAP 51 (115)
Q Consensus 4 ~~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~~~~~~~~~~~~~ 51 (115)
.++|++|||+||.|..+|+.+++.|.+..++|++...++..-+..+-|
T Consensus 38 ~d~DvvvIG~GpGGyvAAikAaQlGlkTacvEkr~~LGGTcLnvGcIP 85 (506)
T KOG1335|consen 38 NDYDVVVIGGGPGGYVAAIKAAQLGLKTACVEKRGTLGGTCLNVGCIP 85 (506)
T ss_pred ccCCEEEECCCCchHHHHHHHHHhcceeEEEeccCccCceeeeccccc
Confidence 358999999999999999999999999999999988877666554433
No 243
>PRK07512 L-aspartate oxidase; Provisional
Probab=98.39 E-value=4.4e-07 Score=65.57 Aligned_cols=37 Identities=32% Similarity=0.442 Sum_probs=32.3
Q ss_pred CCCccccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCC
Q 047339 1 METVEKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDG 39 (115)
Q Consensus 1 m~~~~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~ 39 (115)
|.+.+.||+|||+|.+||++|+.++ +.+|+|+||...
T Consensus 5 ~~~~~~DVlVIG~G~AGl~AAl~Aa--~~~V~lleK~~~ 41 (513)
T PRK07512 5 LRILTGRPVIVGGGLAGLMAALKLA--PRPVVVLSPAPL 41 (513)
T ss_pred ccCCcCCEEEECchHHHHHHHHHhC--cCCEEEEECCCC
Confidence 3456899999999999999999886 579999999875
No 244
>KOG2820 consensus FAD-dependent oxidoreductase [General function prediction only]
Probab=98.38 E-value=5.4e-07 Score=61.41 Aligned_cols=38 Identities=42% Similarity=0.573 Sum_probs=34.7
Q ss_pred ccccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCCCC
Q 047339 4 VEKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGLR 41 (115)
Q Consensus 4 ~~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~~~ 41 (115)
+..+++|||||.-|+++|+.|+++|.+++++|+-+.+.
T Consensus 6 ~~~~viiVGAGVfG~stAyeLaK~g~killLeqf~~ph 43 (399)
T KOG2820|consen 6 KSRDVIIVGAGVFGLSTAYELAKRGDKILLLEQFPLPH 43 (399)
T ss_pred cceeEEEEcccccchHHHHHHHhcCCeEEEEeccCCCc
Confidence 45799999999999999999999999999999887764
No 245
>TIGR03378 glycerol3P_GlpB glycerol-3-phosphate dehydrogenase, anaerobic, B subunit. Members of this protein family are the B subunit, product of the glpB gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.
Probab=98.38 E-value=7.1e-07 Score=62.83 Aligned_cols=34 Identities=41% Similarity=0.640 Sum_probs=31.6
Q ss_pred ccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCC
Q 047339 6 KDVVIIGAGIAGLATALALKRLGIKPLVLEKSDG 39 (115)
Q Consensus 6 ~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~ 39 (115)
+|++|||+|++|+++|+.+++.|.+|.|+|+...
T Consensus 1 ~Dv~IIGgG~aGl~~A~~l~~~g~~v~lv~~~~~ 34 (419)
T TIGR03378 1 FDVIIIGGGLAGLSCALRLAEAGKKCAIIAAGQS 34 (419)
T ss_pred CCEEEECchHHHHHHHHHHHHCCCCEEEEeCCCc
Confidence 5899999999999999999999999999998753
No 246
>PLN03000 amine oxidase
Probab=98.37 E-value=8.5e-07 Score=67.18 Aligned_cols=39 Identities=46% Similarity=0.668 Sum_probs=35.6
Q ss_pred cccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCCCCCc
Q 047339 5 EKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGLRGT 43 (115)
Q Consensus 5 ~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~~~~~ 43 (115)
..+|+|||||++|+.+|..|.+.|++|+|+|+.+.+++.
T Consensus 184 ~~~VvIIGaG~aGL~aA~~L~~~G~~V~VlE~~~riGGR 222 (881)
T PLN03000 184 KSSVVIVGAGLSGLAAARQLMRFGFKVTVLEGRKRPGGR 222 (881)
T ss_pred CCCEEEECccHHHHHHHHHHHHCCCcEEEEEccCcCCCC
Confidence 579999999999999999999999999999998877553
No 247
>COG2303 BetA Choline dehydrogenase and related flavoproteins [Amino acid transport and metabolism]
Probab=98.37 E-value=4.7e-07 Score=65.82 Aligned_cols=37 Identities=41% Similarity=0.540 Sum_probs=33.9
Q ss_pred CccccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCC
Q 047339 3 TVEKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDG 39 (115)
Q Consensus 3 ~~~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~ 39 (115)
.+++|++|||+|.+|+++|..|+..|++|+|+|+...
T Consensus 5 ~~~~D~vIVGsG~aG~~lA~rLs~~g~~VllLEaG~~ 41 (542)
T COG2303 5 KMEYDYVIVGSGSAGSVLAARLSDAGLSVLVLEAGGP 41 (542)
T ss_pred cCCCCEEEECCCchhHHHHHHhcCCCCeEEEEeCCCC
Confidence 3579999999999999999999999999999998754
No 248
>PRK07845 flavoprotein disulfide reductase; Reviewed
Probab=98.36 E-value=8.9e-07 Score=63.27 Aligned_cols=33 Identities=36% Similarity=0.605 Sum_probs=31.2
Q ss_pred ccEEEECCCHHHHHHHHHHHHCCCceEEEcCCC
Q 047339 6 KDVVIIGAGIAGLATALALKRLGIKPLVLEKSD 38 (115)
Q Consensus 6 ~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~ 38 (115)
.+++|||+|++|+.+|..+++.|.+|+|+|+..
T Consensus 2 ~~vvviG~G~~G~~~a~~~~~~g~~v~~~e~~~ 34 (466)
T PRK07845 2 TRIVIIGGGPGGYEAALVAAQLGADVTVIERDG 34 (466)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCeEEEEEccC
Confidence 589999999999999999999999999999865
No 249
>PLN02976 amine oxidase
Probab=98.33 E-value=1.2e-06 Score=69.12 Aligned_cols=40 Identities=38% Similarity=0.596 Sum_probs=35.9
Q ss_pred ccccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCCCCCc
Q 047339 4 VEKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGLRGT 43 (115)
Q Consensus 4 ~~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~~~~~ 43 (115)
..++|+|||+|++|+.+|+.|.+.|++|+|+|+.+.+++.
T Consensus 692 ~~~dV~IIGAG~AGLaAA~~L~~~G~~V~VlEa~~~vGGr 731 (1713)
T PLN02976 692 DRKKIIVVGAGPAGLTAARHLQRQGFSVTVLEARSRIGGR 731 (1713)
T ss_pred CCCcEEEECchHHHHHHHHHHHHCCCcEEEEeeccCCCCc
Confidence 4579999999999999999999999999999998776543
No 250
>PRK13984 putative oxidoreductase; Provisional
Probab=98.31 E-value=1.4e-06 Score=64.01 Aligned_cols=37 Identities=35% Similarity=0.478 Sum_probs=34.0
Q ss_pred cccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCCCC
Q 047339 5 EKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGLR 41 (115)
Q Consensus 5 ~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~~~ 41 (115)
..+|+|||+|++|+++|..|++.|++|+|+|+.+.++
T Consensus 283 ~~~v~IIGaG~aGl~aA~~L~~~G~~v~vie~~~~~g 319 (604)
T PRK13984 283 NKKVAIVGSGPAGLSAAYFLATMGYEVTVYESLSKPG 319 (604)
T ss_pred CCeEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCC
Confidence 5689999999999999999999999999999987654
No 251
>TIGR01811 sdhA_Bsu succinate dehydrogenase or fumarate reductase, flavoprotein subunit, Bacillus subtilis subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in the low-GC Gram-positive bacteria and a few other lineages. This enzyme may act in a complete or partial TCA cycle, or act in the opposite direction as fumarate reductase. In some but not all species, succinate dehydrogenase and fumarate reductase may be encoded as separate isozymes.
Probab=98.30 E-value=8e-07 Score=65.40 Aligned_cols=31 Identities=32% Similarity=0.547 Sum_probs=29.8
Q ss_pred EEEECCCHHHHHHHHHHHHCCCceEEEcCCC
Q 047339 8 VVIIGAGIAGLATALALKRLGIKPLVLEKSD 38 (115)
Q Consensus 8 v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~ 38 (115)
|+|||+|++||++|+.+++.|.+|+|+||..
T Consensus 1 VlVVG~G~AGl~AAl~Aae~G~~VilleK~~ 31 (603)
T TIGR01811 1 VIVVGTGLAGGMAAAKLAELGYHVKLFSYVD 31 (603)
T ss_pred CEEECccHHHHHHHHHHHHcCCCEEEEEecC
Confidence 6899999999999999999999999999987
No 252
>COG0493 GltD NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only]
Probab=98.30 E-value=9.4e-07 Score=62.98 Aligned_cols=58 Identities=34% Similarity=0.349 Sum_probs=43.4
Q ss_pred ccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCCCCCcce-e-------eeeCccHHHHHHHcCCh
Q 047339 6 KDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGLRGTGA-A-------INFAPNAWLALDALGVS 63 (115)
Q Consensus 6 ~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~~~~~~~-~-------~~~~~~~~~~l~~~g~~ 63 (115)
.+|+|||+||+||.+|..|++.|+.|+++|+.+.+++.-. + -.+....++.|+..|+.
T Consensus 124 ~~VaviGaGPAGl~~a~~L~~~G~~Vtv~e~~~~~GGll~yGIP~~kl~k~i~d~~i~~l~~~Gv~ 189 (457)
T COG0493 124 KKVAVIGAGPAGLAAADDLSRAGHDVTVFERVALDGGLLLYGIPDFKLPKDILDRRLELLERSGVE 189 (457)
T ss_pred CEEEEECCCchHhhhHHHHHhCCCeEEEeCCcCCCceeEEecCchhhccchHHHHHHHHHHHcCeE
Confidence 6899999999999999999999999999999887643211 1 11223455677777643
No 253
>TIGR01810 betA choline dehydrogenase. This enzyme is a member of the GMC oxidoreductase family (pfam00732 and pfam05199), sharing a common evoluntionary origin and enzymatic reaction with alcohol dehydrogenase. Outgrouping from this model, Caulobacter crescentus shares sequence homology with choline dehydrogenase, yet other genes participating in this enzymatic reaction have not currently been identified.
Probab=98.30 E-value=7.8e-07 Score=64.50 Aligned_cols=33 Identities=39% Similarity=0.384 Sum_probs=30.7
Q ss_pred cEEEECCCHHHHHHHHHHHHCC-CceEEEcCCCC
Q 047339 7 DVVIIGAGIAGLATALALKRLG-IKPLVLEKSDG 39 (115)
Q Consensus 7 ~v~IvG~G~~Gl~~A~~l~~~g-~~v~viE~~~~ 39 (115)
|+||||+|.+|+.+|..|++.+ ++|+|+|+.+.
T Consensus 1 D~iIVG~G~aG~vvA~rLs~~~~~~VlvlEaG~~ 34 (532)
T TIGR01810 1 DYIIIGGGSAGSVLAGRLSEDVSNSVLVLEAGGS 34 (532)
T ss_pred CEEEECCCchHHHHHHHhccCCCCeEEEEecCCC
Confidence 7999999999999999999998 79999999864
No 254
>COG3573 Predicted oxidoreductase [General function prediction only]
Probab=98.27 E-value=2.5e-06 Score=58.56 Aligned_cols=38 Identities=34% Similarity=0.666 Sum_probs=34.1
Q ss_pred CCccccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCC
Q 047339 2 ETVEKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDG 39 (115)
Q Consensus 2 ~~~~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~ 39 (115)
+....|++|||+|++||.+|..|+.+|.+|+|+|+...
T Consensus 2 d~~~~dvivvgaglaglvaa~elA~aG~~V~ildQEge 39 (552)
T COG3573 2 DGLTADVIVVGAGLAGLVAAAELADAGKRVLILDQEGE 39 (552)
T ss_pred CcccccEEEECccHHHHHHHHHHHhcCceEEEEccccc
Confidence 44578999999999999999999999999999997554
No 255
>PLN02785 Protein HOTHEAD
Probab=98.25 E-value=1.8e-06 Score=63.43 Aligned_cols=35 Identities=29% Similarity=0.475 Sum_probs=32.1
Q ss_pred ccccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCC
Q 047339 4 VEKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDG 39 (115)
Q Consensus 4 ~~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~ 39 (115)
.++|+||||+|.+|+.+|..|++ +.+|+|+|+...
T Consensus 54 ~~yD~IIVG~G~aG~~lA~~Ls~-~~~VLllE~G~~ 88 (587)
T PLN02785 54 SAYDYIVVGGGTAGCPLAATLSQ-NFSVLLLERGGV 88 (587)
T ss_pred ccCCEEEECcCHHHHHHHHHHhc-CCcEEEEecCCC
Confidence 46999999999999999999999 699999999764
No 256
>KOG0042 consensus Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=98.23 E-value=6.1e-07 Score=64.44 Aligned_cols=58 Identities=29% Similarity=0.383 Sum_probs=47.1
Q ss_pred CCccccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCCCCC-cceeeeeCccHHHHHHH
Q 047339 2 ETVEKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGLRG-TGAAINFAPNAWLALDA 59 (115)
Q Consensus 2 ~~~~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~~~~-~~~~~~~~~~~~~~l~~ 59 (115)
++.++||+|||||.+|.-.|+=.+-+|.++.++|+.++.++ ++++.-+-+.+.++|++
T Consensus 64 ~~~~fDVLIIGGGAtGaGcALDA~TRGLktaLVE~~DF~SGTSSkSTKLiHGGVRYLek 122 (680)
T KOG0042|consen 64 STHEFDVLIIGGGATGAGCALDAATRGLKTALVEAGDFASGTSSKSTKLIHGGVRYLEK 122 (680)
T ss_pred cCCcccEEEECCCccCcceeehhhcccceeEEEecccccCCccccchhhhcccHHHHHH
Confidence 35679999999999999999999999999999999998643 55665555666666653
No 257
>TIGR00136 gidA glucose-inhibited division protein A. GidA, the longer of two forms of GidA-related proteins, appears to be present in all complete eubacterial genomes so far, as well as Saccharomyces cerevisiae. A subset of these organisms have a closely related protein. GidA is absent in the Archaea. It appears to act with MnmE, in an alpha2/beta2 heterotetramer, in the 5-carboxymethylaminomethyl modification of uridine 34 in certain tRNAs. The shorter, related protein, previously called gid or gidA(S), is now called TrmFO (see model TIGR00137).
Probab=98.23 E-value=2.5e-06 Score=62.60 Aligned_cols=34 Identities=44% Similarity=0.618 Sum_probs=31.7
Q ss_pred ccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCC
Q 047339 6 KDVVIIGAGIAGLATALALKRLGIKPLVLEKSDG 39 (115)
Q Consensus 6 ~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~ 39 (115)
+||+|||+|++|+.+|..+++.|.+|+|+|++..
T Consensus 1 yDViVIGaG~AGl~aA~ala~~G~~v~Lie~~~~ 34 (617)
T TIGR00136 1 FDVIVIGGGHAGCEAALAAARMGAKTLLLTLNLD 34 (617)
T ss_pred CeEEEECccHHHHHHHHHHHHCCCCEEEEecccc
Confidence 5899999999999999999999999999998743
No 258
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=98.20 E-value=3.6e-06 Score=58.94 Aligned_cols=36 Identities=28% Similarity=0.501 Sum_probs=31.4
Q ss_pred cccEEEECCCHHHHHHHHHHHHCCC--ceEEEcCCCCC
Q 047339 5 EKDVVIIGAGIAGLATALALKRLGI--KPLVLEKSDGL 40 (115)
Q Consensus 5 ~~~v~IvG~G~~Gl~~A~~l~~~g~--~v~viE~~~~~ 40 (115)
+.+|+|||||++|+.+|..|++.|. +|+|+++.+..
T Consensus 3 ~~~vvIIGgG~AG~~aA~~Lr~~~~~~~I~li~~e~~~ 40 (396)
T PRK09754 3 EKTIIIVGGGQAAAMAAASLRQQGFTGELHLFSDERHL 40 (396)
T ss_pred cCcEEEECChHHHHHHHHHHHhhCCCCCEEEeCCCCCC
Confidence 3589999999999999999999886 79999987653
No 259
>PRK07846 mycothione reductase; Reviewed
Probab=98.18 E-value=2.8e-06 Score=60.55 Aligned_cols=40 Identities=23% Similarity=0.295 Sum_probs=31.0
Q ss_pred cccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCCCCCcceee
Q 047339 5 EKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGLRGTGAAI 47 (115)
Q Consensus 5 ~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~~~~~~~~~ 47 (115)
+||++|||+||+|..+|.. +.|.+|.|+|+.. .++.+.+.
T Consensus 1 ~yD~vVIG~G~~g~~aa~~--~~G~~V~lie~~~-~GGtC~n~ 40 (451)
T PRK07846 1 HYDLIIIGTGSGNSILDER--FADKRIAIVEKGT-FGGTCLNV 40 (451)
T ss_pred CCCEEEECCCHHHHHHHHH--HCCCeEEEEeCCC-CCCcccCc
Confidence 4899999999999988865 4699999999853 34444433
No 260
>PRK09897 hypothetical protein; Provisional
Probab=98.17 E-value=3.9e-06 Score=60.98 Aligned_cols=36 Identities=28% Similarity=0.465 Sum_probs=31.2
Q ss_pred ccEEEECCCHHHHHHHHHHHHCC--CceEEEcCCCCCC
Q 047339 6 KDVVIIGAGIAGLATALALKRLG--IKPLVLEKSDGLR 41 (115)
Q Consensus 6 ~~v~IvG~G~~Gl~~A~~l~~~g--~~v~viE~~~~~~ 41 (115)
++|+|||||++|+++|..|.+.+ .+|+|+|++..++
T Consensus 2 ~~IAIIGgGp~Gl~~a~~L~~~~~~l~V~lfEp~~~~G 39 (534)
T PRK09897 2 KKIAIVGAGPTGIYTFFSLLQQQTPLSISIFEQADEAG 39 (534)
T ss_pred CeEEEECCcHHHHHHHHHHHhcCCCCcEEEEecCCCCC
Confidence 58999999999999999998864 5899999976553
No 261
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=98.15 E-value=3.5e-06 Score=59.70 Aligned_cols=34 Identities=38% Similarity=0.580 Sum_probs=30.5
Q ss_pred cEEEECCCHHHHHHHHHHHHCC--CceEEEcCCCCC
Q 047339 7 DVVIIGAGIAGLATALALKRLG--IKPLVLEKSDGL 40 (115)
Q Consensus 7 ~v~IvG~G~~Gl~~A~~l~~~g--~~v~viE~~~~~ 40 (115)
+|+|||||++|+.+|..|++.+ .+|+|+|+++..
T Consensus 2 ~vvIIGgG~aGl~aA~~l~~~~~~~~Vtli~~~~~~ 37 (444)
T PRK09564 2 KIIIIGGTAAGMSAAAKAKRLNKELEITVYEKTDIV 37 (444)
T ss_pred eEEEECCcHHHHHHHHHHHHHCCCCcEEEEECCCcc
Confidence 7999999999999999999875 589999998754
No 262
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=98.15 E-value=4.5e-06 Score=59.28 Aligned_cols=35 Identities=23% Similarity=0.483 Sum_probs=31.2
Q ss_pred ccEEEECCCHHHHHHHHHHHHC--CCceEEEcCCCCC
Q 047339 6 KDVVIIGAGIAGLATALALKRL--GIKPLVLEKSDGL 40 (115)
Q Consensus 6 ~~v~IvG~G~~Gl~~A~~l~~~--g~~v~viE~~~~~ 40 (115)
.+|+|||||++|+.+|..|++. +++|+|+|+.+..
T Consensus 2 ~~VVIIGgG~aG~~aA~~l~~~~~~~~I~li~~~~~~ 38 (438)
T PRK13512 2 PKIIVVGAVAGGATCASQIRRLDKESDIIIFEKDRDM 38 (438)
T ss_pred CeEEEECCcHHHHHHHHHHHhhCCCCCEEEEECCCCc
Confidence 4899999999999999999886 6899999998754
No 263
>TIGR03452 mycothione_red mycothione reductase. Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.
Probab=98.13 E-value=4.8e-06 Score=59.36 Aligned_cols=40 Identities=23% Similarity=0.338 Sum_probs=30.9
Q ss_pred cccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCCCCCcceee
Q 047339 5 EKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGLRGTGAAI 47 (115)
Q Consensus 5 ~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~~~~~~~~~ 47 (115)
+||++|||+||+|..+|. ++.|.+|.|+|+.. .++.+.+.
T Consensus 2 ~yD~vvIG~G~~g~~aa~--~~~g~~V~lie~~~-~GGtC~n~ 41 (452)
T TIGR03452 2 HYDLIIIGTGSGNSIPDP--RFADKRIAIVEKGT-FGGTCLNV 41 (452)
T ss_pred CcCEEEECCCHHHHHHHH--HHCCCeEEEEeCCC-CCCeeecc
Confidence 589999999999999864 45799999999853 34444433
No 264
>KOG1800 consensus Ferredoxin/adrenodoxin reductase [Nucleotide transport and metabolism]
Probab=98.12 E-value=5.7e-06 Score=57.40 Aligned_cols=38 Identities=32% Similarity=0.318 Sum_probs=33.0
Q ss_pred cccEEEECCCHHHHHHHHHHHH--CCCceEEEcCCCCCCC
Q 047339 5 EKDVVIIGAGIAGLATALALKR--LGIKPLVLEKSDGLRG 42 (115)
Q Consensus 5 ~~~v~IvG~G~~Gl~~A~~l~~--~g~~v~viE~~~~~~~ 42 (115)
.+.|+|||+||+|+.+|..|.+ .++.|+|+|+.+.+-+
T Consensus 20 ~p~vcIVGsGPAGfYtA~~LLk~~~~~~Vdi~Ek~PvPFG 59 (468)
T KOG1800|consen 20 TPRVCIVGSGPAGFYTAQHLLKRHPNAHVDIFEKLPVPFG 59 (468)
T ss_pred CceEEEECCCchHHHHHHHHHhcCCCCeeEeeecCCcccc
Confidence 4589999999999999998888 4699999999988743
No 265
>COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]
Probab=98.09 E-value=5.5e-06 Score=57.58 Aligned_cols=57 Identities=37% Similarity=0.439 Sum_probs=43.1
Q ss_pred ccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCCCCCcceeeeeCccHHHHHHHcCC
Q 047339 6 KDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGLRGTGAAINFAPNAWLALDALGV 62 (115)
Q Consensus 6 ~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~~~~~~~~~~~~~~~~~~l~~~g~ 62 (115)
.+++|||+|+.|+.+|..|+++|++|+++|+.+.+.+......+.....+.++..|+
T Consensus 137 ~~v~vvG~G~~gle~A~~~~~~G~~v~l~e~~~~~~~~~~~~~~~~~~~~~l~~~gi 193 (415)
T COG0446 137 KDVVVVGAGPIGLEAAEAAAKRGKKVTLIEAADRLGGQLLDPEVAEELAELLEKYGV 193 (415)
T ss_pred CeEEEECCcHHHHHHHHHHHHcCCeEEEEEcccccchhhhhHHHHHHHHHHHHHCCc
Confidence 689999999999999999999999999999988875443221223334456666663
No 266
>COG1206 Gid NAD(FAD)-utilizing enzyme possibly involved in translation [Translation, ribosomal structure and biogenesis]
Probab=98.06 E-value=4.9e-06 Score=56.82 Aligned_cols=36 Identities=25% Similarity=0.485 Sum_probs=32.6
Q ss_pred ccccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCC
Q 047339 4 VEKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDG 39 (115)
Q Consensus 4 ~~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~ 39 (115)
++..|-|||||++|..+|+.++++|++|.++|..+.
T Consensus 2 ~~~~i~VIGaGLAGSEAAwqiA~~Gv~V~L~EMRp~ 37 (439)
T COG1206 2 MQQPINVIGAGLAGSEAAWQIAKRGVPVILYEMRPV 37 (439)
T ss_pred CCCceEEEcccccccHHHHHHHHcCCcEEEEEcccc
Confidence 445789999999999999999999999999997765
No 267
>KOG0399 consensus Glutamate synthase [Amino acid transport and metabolism]
Probab=98.04 E-value=5.9e-06 Score=64.08 Aligned_cols=37 Identities=49% Similarity=0.640 Sum_probs=34.4
Q ss_pred ccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCCCCC
Q 047339 6 KDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGLRG 42 (115)
Q Consensus 6 ~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~~~~ 42 (115)
++|.|||+||+||.+|-.|.+.|+.|+||||.+.+++
T Consensus 1786 ~~vaiigsgpaglaaadqlnk~gh~v~vyer~dr~gg 1822 (2142)
T KOG0399|consen 1786 KRVAIIGSGPAGLAAADQLNKAGHTVTVYERSDRVGG 1822 (2142)
T ss_pred cEEEEEccCchhhhHHHHHhhcCcEEEEEEecCCcCc
Confidence 6899999999999999999999999999999988753
No 268
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=98.03 E-value=1.2e-05 Score=55.94 Aligned_cols=35 Identities=23% Similarity=0.422 Sum_probs=30.4
Q ss_pred cccEEEECCCHHHHHHHHHHHHC--CCceEEEcCCCC
Q 047339 5 EKDVVIIGAGIAGLATALALKRL--GIKPLVLEKSDG 39 (115)
Q Consensus 5 ~~~v~IvG~G~~Gl~~A~~l~~~--g~~v~viE~~~~ 39 (115)
+.+++|||||++|+.+|..|.+. ..+|+|+++.+.
T Consensus 2 ~~~vvIiG~G~AG~~~a~~lr~~~~~~~Itvi~~~~~ 38 (377)
T PRK04965 2 SNGIVIIGSGFAARQLVKNIRKQDAHIPITLITADSG 38 (377)
T ss_pred CCCEEEECCcHHHHHHHHHHHhhCcCCCEEEEeCCCC
Confidence 46899999999999999999885 468999988765
No 269
>TIGR02485 CobZ_N-term precorrin 3B synthase CobZ. CobZ is essential for cobalamin biosynthesis (by knockout of the R. capsulatus gene ) and is complemented by the characterized precorrin 3B synthase CobG. The enzyme has been shown to contain flavin, heme and Fe-S cluster cofactors and is believed to require dioxygen as a substrate. This model identifies the N-terminal portion of the R. capsulatus gene which, in other species exists as a separate protein. The C-terminal portion is homologous to the 2-component signal transduction system protein CitB (TIGR02484).
Probab=98.01 E-value=5.4e-06 Score=58.70 Aligned_cols=30 Identities=40% Similarity=0.716 Sum_probs=28.5
Q ss_pred EECCCHHHHHHHHHHHHCCCceEEEcCCCC
Q 047339 10 IIGAGIAGLATALALKRLGIKPLVLEKSDG 39 (115)
Q Consensus 10 IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~ 39 (115)
|||+|.+|+++|+.++++|.+|+|+||.+.
T Consensus 1 VVG~G~AGl~AA~~Aa~~Ga~V~vlEK~~~ 30 (432)
T TIGR02485 1 VIGGGLAGLCAAIEARRAGASVLLLEAAPR 30 (432)
T ss_pred CCcccHHHHHHHHHHHhCCCcEEEEeCCCC
Confidence 799999999999999999999999999774
No 270
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=98.01 E-value=1e-05 Score=57.24 Aligned_cols=37 Identities=22% Similarity=0.295 Sum_probs=32.5
Q ss_pred ccccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCCC
Q 047339 4 VEKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGL 40 (115)
Q Consensus 4 ~~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~~ 40 (115)
.+++|+|||||.+|+.+|..|.+.+++|+|+|+++..
T Consensus 9 ~~~~vVIvGgG~aGl~~a~~L~~~~~~ItlI~~~~~~ 45 (424)
T PTZ00318 9 KKPNVVVLGTGWAGAYFVRNLDPKKYNITVISPRNHM 45 (424)
T ss_pred CCCeEEEECCCHHHHHHHHHhCcCCCeEEEEcCCCCc
Confidence 3579999999999999999998778999999987654
No 271
>KOG2853 consensus Possible oxidoreductase [General function prediction only]
Probab=98.00 E-value=1.1e-05 Score=55.48 Aligned_cols=36 Identities=44% Similarity=0.625 Sum_probs=32.3
Q ss_pred cccEEEECCCHHHHHHHHHHHHC----CCceEEEcCCCCC
Q 047339 5 EKDVVIIGAGIAGLATALALKRL----GIKPLVLEKSDGL 40 (115)
Q Consensus 5 ~~~v~IvG~G~~Gl~~A~~l~~~----g~~v~viE~~~~~ 40 (115)
..||+|||||..|++.|++|+++ |++|+|+|++..-
T Consensus 86 ~~dVvIIGGG~~GsS~AfWLKer~rd~gl~VvVVErddty 125 (509)
T KOG2853|consen 86 HCDVVIIGGGGSGSSTAFWLKERARDEGLNVVVVERDDTY 125 (509)
T ss_pred ccCEEEECCCccchhhHHHHHHHhhcCCceEEEEeccCcc
Confidence 57999999999999999999883 6999999998764
No 272
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=97.99 E-value=1.5e-05 Score=54.28 Aligned_cols=38 Identities=32% Similarity=0.392 Sum_probs=34.6
Q ss_pred CCCccccEEEECCCHHHHHHHHHHHHCCCceEEEcCCC
Q 047339 1 METVEKDVVIIGAGIAGLATALALKRLGIKPLVLEKSD 38 (115)
Q Consensus 1 m~~~~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~ 38 (115)
|++.+++|+|||+|..|..+|..|++.|++|+++.+..
T Consensus 1 ~~~~~m~I~IiG~GaiG~~lA~~L~~~g~~V~~~~r~~ 38 (313)
T PRK06249 1 MDSETPRIGIIGTGAIGGFYGAMLARAGFDVHFLLRSD 38 (313)
T ss_pred CCCcCcEEEEECCCHHHHHHHHHHHHCCCeEEEEEeCC
Confidence 66777899999999999999999999999999998754
No 273
>KOG4716 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=97.98 E-value=1.3e-05 Score=55.07 Aligned_cols=41 Identities=34% Similarity=0.497 Sum_probs=34.9
Q ss_pred CccccEEEECCCHHHHHHHHHHHHCCCceEEEcC-CCCCCCc
Q 047339 3 TVEKDVVIIGAGIAGLATALALKRLGIKPLVLEK-SDGLRGT 43 (115)
Q Consensus 3 ~~~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~-~~~~~~~ 43 (115)
+.+||.+|||||.+||++|..++..|.+|.++|- .+.|.++
T Consensus 17 sydyDLIviGgGSgGLacaKeAa~~G~kV~~lDfV~PtP~Gt 58 (503)
T KOG4716|consen 17 SYDYDLIVIGGGSGGLACAKEAADLGAKVACLDFVKPTPQGT 58 (503)
T ss_pred cCCccEEEEcCCcchhhHHHHHHhcCCcEEEEeecccCCCCC
Confidence 5689999999999999999999999999999995 3344333
No 274
>KOG2960 consensus Protein involved in thiamine biosynthesis and DNA damage tolerance [General function prediction only]
Probab=97.94 E-value=2.7e-06 Score=54.96 Aligned_cols=59 Identities=36% Similarity=0.495 Sum_probs=41.8
Q ss_pred cccEEEECCCHHHHHHHHHHHHC--CCceEEEcCCCCCCCcc-eeeee------CccHHHHHHHcCCh
Q 047339 5 EKDVVIIGAGIAGLATALALKRL--GIKPLVLEKSDGLRGTG-AAINF------APNAWLALDALGVS 63 (115)
Q Consensus 5 ~~~v~IvG~G~~Gl~~A~~l~~~--g~~v~viE~~~~~~~~~-~~~~~------~~~~~~~l~~~g~~ 63 (115)
..||+|||+|.+||++|+..+++ ..+|.|+|.+-.+++.. .+.++ +..+.-+|+++|+.
T Consensus 76 esDvviVGAGSaGLsAAY~I~~~rPdlkvaIIE~SVaPGGGaWLGGQLFSAMvvRKPAhLFL~Eigvp 143 (328)
T KOG2960|consen 76 ESDVVIVGAGSAGLSAAYVIAKNRPDLKVAIIESSVAPGGGAWLGGQLFSAMVVRKPAHLFLQEIGVP 143 (328)
T ss_pred ccceEEECCCccccceeeeeeccCCCceEEEEEeeecCCCcccccchhhhhhhhcChHHHHHHHhCCC
Confidence 46999999999999999998864 58999999877765433 23222 22233466666654
No 275
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=97.93 E-value=1.8e-05 Score=55.54 Aligned_cols=35 Identities=34% Similarity=0.461 Sum_probs=32.4
Q ss_pred ccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCCC
Q 047339 6 KDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGL 40 (115)
Q Consensus 6 ~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~~ 40 (115)
.+++|||+|+.|+.+|..|++.|.+|+|+|+.+.+
T Consensus 145 ~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~ 179 (396)
T PRK09754 145 RSVVIVGAGTIGLELAASATQRRCKVTVIELAATV 179 (396)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCcc
Confidence 57999999999999999999999999999987765
No 276
>COG0029 NadB Aspartate oxidase [Coenzyme metabolism]
Probab=97.90 E-value=1.9e-05 Score=56.35 Aligned_cols=33 Identities=45% Similarity=0.599 Sum_probs=30.5
Q ss_pred cEEEECCCHHHHHHHHHHHHCCCceEEEcCCCCC
Q 047339 7 DVVIIGAGIAGLATALALKRLGIKPLVLEKSDGL 40 (115)
Q Consensus 7 ~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~~ 40 (115)
||+|||+|.+||++|+.|.+. ++|+|+-|.+..
T Consensus 9 dV~IiGsG~AGL~~AL~L~~~-~~V~vltk~~~~ 41 (518)
T COG0029 9 DVLIIGSGLAGLTAALSLAPS-FRVTVLTKGPLG 41 (518)
T ss_pred cEEEECCcHHHHHHHHhCCCC-CcEEEEeCCCCC
Confidence 899999999999999999988 999999987754
No 277
>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=97.89 E-value=3.2e-05 Score=54.87 Aligned_cols=58 Identities=26% Similarity=0.282 Sum_probs=41.2
Q ss_pred cccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCCCCCcceeeeeCccHHHHHHHcCCh
Q 047339 5 EKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGLRGTGAAINFAPNAWLALDALGVS 63 (115)
Q Consensus 5 ~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~~~~~~~~~~~~~~~~~~l~~~g~~ 63 (115)
+.+++|||||++|+.+|..+++.|.+|+++|+.+...+.. .-.+.....+.|+..|+.
T Consensus 157 ~~~vvIIGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l~~~-~~~~~~~~~~~l~~~GI~ 214 (438)
T PRK07251 157 PERLGIIGGGNIGLEFAGLYNKLGSKVTVLDAASTILPRE-EPSVAALAKQYMEEDGIT 214 (438)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCccCCCC-CHHHHHHHHHHHHHcCCE
Confidence 4689999999999999999999999999999987653221 111112233455666654
No 278
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=97.89 E-value=2.5e-05 Score=54.39 Aligned_cols=35 Identities=26% Similarity=0.526 Sum_probs=32.3
Q ss_pred ccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCCC
Q 047339 6 KDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGL 40 (115)
Q Consensus 6 ~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~~ 40 (115)
.+++|||+|+.|+.+|..|.+.|.+|+++++.+..
T Consensus 142 ~~vvViGgG~~g~e~A~~L~~~g~~Vtlv~~~~~~ 176 (377)
T PRK04965 142 QRVLVVGGGLIGTELAMDLCRAGKAVTLVDNAASL 176 (377)
T ss_pred CeEEEECCCHHHHHHHHHHHhcCCeEEEEecCCcc
Confidence 57999999999999999999999999999987664
No 279
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=97.88 E-value=2.4e-05 Score=48.26 Aligned_cols=32 Identities=28% Similarity=0.370 Sum_probs=30.1
Q ss_pred cEEEECCCHHHHHHHHHHHHCCCceEEEcCCC
Q 047339 7 DVVIIGAGIAGLATALALKRLGIKPLVLEKSD 38 (115)
Q Consensus 7 ~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~ 38 (115)
+|+|+|||..|.++|..|+.+|++|.++.+++
T Consensus 1 KI~ViGaG~~G~AlA~~la~~g~~V~l~~~~~ 32 (157)
T PF01210_consen 1 KIAVIGAGNWGTALAALLADNGHEVTLWGRDE 32 (157)
T ss_dssp EEEEESSSHHHHHHHHHHHHCTEEEEEETSCH
T ss_pred CEEEECcCHHHHHHHHHHHHcCCEEEEEeccH
Confidence 58999999999999999999999999998864
No 280
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=97.87 E-value=4e-05 Score=50.02 Aligned_cols=57 Identities=19% Similarity=0.267 Sum_probs=44.0
Q ss_pred cEEEECCCHHHHHHHHHHHHCCCceEEEcCCCCCC-------CcceeeeeCccHHHHHHHcCCh
Q 047339 7 DVVIIGAGIAGLATALALKRLGIKPLVLEKSDGLR-------GTGAAINFAPNAWLALDALGVS 63 (115)
Q Consensus 7 ~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~~~-------~~~~~~~~~~~~~~~l~~~g~~ 63 (115)
+++|+|+|..|..+|..|.+.|+.|+++|+++... .....+.........|++.|+.
T Consensus 2 ~iiIiG~G~vG~~va~~L~~~g~~Vv~Id~d~~~~~~~~~~~~~~~~v~gd~t~~~~L~~agi~ 65 (225)
T COG0569 2 KIIIIGAGRVGRSVARELSEEGHNVVLIDRDEERVEEFLADELDTHVVIGDATDEDVLEEAGID 65 (225)
T ss_pred EEEEECCcHHHHHHHHHHHhCCCceEEEEcCHHHHHHHhhhhcceEEEEecCCCHHHHHhcCCC
Confidence 79999999999999999999999999999876531 1233444445556678877765
No 281
>KOG1238 consensus Glucose dehydrogenase/choline dehydrogenase/mandelonitrile lyase (GMC oxidoreductase family) [General function prediction only]
Probab=97.87 E-value=2e-05 Score=57.72 Aligned_cols=37 Identities=27% Similarity=0.359 Sum_probs=33.3
Q ss_pred ccccEEEECCCHHHHHHHHHHHHC-CCceEEEcCCCCC
Q 047339 4 VEKDVVIIGAGIAGLATALALKRL-GIKPLVLEKSDGL 40 (115)
Q Consensus 4 ~~~~v~IvG~G~~Gl~~A~~l~~~-g~~v~viE~~~~~ 40 (115)
..||.||||||-+||.+|..|++. ..+|+|+|+...+
T Consensus 56 ~~yDyIVVGgGtAGcvlAarLSEn~~~~VLLLEaGg~~ 93 (623)
T KOG1238|consen 56 SSYDYIVVGGGTAGCVLAARLSENPNWSVLLLEAGGDP 93 (623)
T ss_pred cCCCEEEECCCchhHHHHHhhccCCCceEEEEecCCCC
Confidence 479999999999999999999985 5899999987665
No 282
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=97.86 E-value=3.6e-05 Score=55.17 Aligned_cols=58 Identities=31% Similarity=0.457 Sum_probs=41.6
Q ss_pred cccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCCCCCcceeeeeCccHHHHHHHcCCh
Q 047339 5 EKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGLRGTGAAINFAPNAWLALDALGVS 63 (115)
Q Consensus 5 ~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~~~~~~~~~~~~~~~~~~l~~~g~~ 63 (115)
..+++|||||++|+.+|..|++.|.+|+++|+.+.+.... ...+.....+.|+..|+.
T Consensus 180 ~~~vvIIGgG~~G~E~A~~l~~~g~~Vtli~~~~~il~~~-~~~~~~~l~~~l~~~gI~ 237 (472)
T PRK05976 180 PKSLVIVGGGVIGLEWASMLADFGVEVTVVEAADRILPTE-DAELSKEVARLLKKLGVR 237 (472)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCeEEEEEecCccCCcC-CHHHHHHHHHHHHhcCCE
Confidence 4689999999999999999999999999999887643211 111222234456666654
No 283
>KOG2665 consensus Predicted FAD-dependent oxidoreductase [Function unknown]
Probab=97.85 E-value=1.3e-05 Score=54.57 Aligned_cols=38 Identities=42% Similarity=0.593 Sum_probs=33.5
Q ss_pred CccccEEEECCCHHHHHHHHHHHHC--CCceEEEcCCCCC
Q 047339 3 TVEKDVVIIGAGIAGLATALALKRL--GIKPLVLEKSDGL 40 (115)
Q Consensus 3 ~~~~~v~IvG~G~~Gl~~A~~l~~~--g~~v~viE~~~~~ 40 (115)
...+|++|||||++|++.|..|.-+ +.+|.|+|+....
T Consensus 46 ~~~~D~VvvGgGiVGlAsARel~lrhp~l~V~vleke~~l 85 (453)
T KOG2665|consen 46 KERYDLVVVGGGIVGLASARELSLRHPSLKVAVLEKEKSL 85 (453)
T ss_pred cccccEEEECCceeehhhhHHHhhcCCCceEEeeehhhhh
Confidence 4579999999999999999988876 8999999987654
No 284
>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.
Probab=97.85 E-value=4e-05 Score=54.69 Aligned_cols=58 Identities=21% Similarity=0.254 Sum_probs=42.6
Q ss_pred cccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCCCCCcceeeeeCccHHHHHHHcCCh
Q 047339 5 EKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGLRGTGAAINFAPNAWLALDALGVS 63 (115)
Q Consensus 5 ~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~~~~~~~~~~~~~~~~~~l~~~g~~ 63 (115)
+.+++|||||..|+-+|..|++.|.+|+++++.+.+.. ...-.+.....+.|+..|+.
T Consensus 166 ~~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~il~-~~d~~~~~~~~~~l~~~gI~ 223 (450)
T TIGR01421 166 PKRVVIVGAGYIAVELAGVLHGLGSETHLVIRHERVLR-SFDSMISETITEEYEKEGIN 223 (450)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCCCc-ccCHHHHHHHHHHHHHcCCE
Confidence 46899999999999999999999999999998876532 11112233345566666654
No 285
>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase. Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.
Probab=97.83 E-value=4.1e-05 Score=54.13 Aligned_cols=35 Identities=34% Similarity=0.598 Sum_probs=32.2
Q ss_pred ccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCCC
Q 047339 6 KDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGL 40 (115)
Q Consensus 6 ~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~~ 40 (115)
.+++|||+|++|+.+|..|++.|.+|+++++.+..
T Consensus 138 ~~vvViGgG~~g~e~A~~l~~~g~~Vtli~~~~~~ 172 (427)
T TIGR03385 138 ENVVIIGGGYIGIEMAEALRERGKNVTLIHRSERI 172 (427)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCcEEEEECCccc
Confidence 58999999999999999999999999999987654
No 286
>KOG0404 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=97.82 E-value=2.6e-05 Score=50.84 Aligned_cols=33 Identities=39% Similarity=0.596 Sum_probs=30.5
Q ss_pred ccccEEEECCCHHHHHHHHHHHHCCCceEEEcC
Q 047339 4 VEKDVVIIGAGIAGLATALALKRLGIKPLVLEK 36 (115)
Q Consensus 4 ~~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~ 36 (115)
..-+|+|||+||++.++|++++++..+.+++|-
T Consensus 7 h~e~v~IiGSGPAa~tAAiYaaraelkPllfEG 39 (322)
T KOG0404|consen 7 HNENVVIIGSGPAAHTAAIYAARAELKPLLFEG 39 (322)
T ss_pred eeeeEEEEccCchHHHHHHHHhhcccCceEEee
Confidence 445899999999999999999999999999994
No 287
>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated
Probab=97.81 E-value=5.6e-05 Score=54.01 Aligned_cols=58 Identities=26% Similarity=0.317 Sum_probs=41.2
Q ss_pred cccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCCCCCcceeeeeCccHHHHHHHcCCh
Q 047339 5 EKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGLRGTGAAINFAPNAWLALDALGVS 63 (115)
Q Consensus 5 ~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~~~~~~~~~~~~~~~~~~l~~~g~~ 63 (115)
+.+++|||+|++|+.+|..+.+.|.+|+++++.+.+... ....+.....+.|++.|+.
T Consensus 170 ~~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~ll~~-~d~e~~~~l~~~L~~~GI~ 227 (458)
T PRK06912 170 PSSLLIVGGGVIGCEFASIYSRLGTKVTIVEMAPQLLPG-EDEDIAHILREKLENDGVK 227 (458)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCcCcc-ccHHHHHHHHHHHHHCCCE
Confidence 468999999999999999999999999999987765321 1111222334456666654
No 288
>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]
Probab=97.81 E-value=1.2e-05 Score=55.54 Aligned_cols=32 Identities=34% Similarity=0.517 Sum_probs=28.9
Q ss_pred ccccEEEECCCHHHHHHHHHHHHCCCceEEEc
Q 047339 4 VEKDVVIIGAGIAGLATALALKRLGIKPLVLE 35 (115)
Q Consensus 4 ~~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE 35 (115)
..|||+||||||+|.++|++.++.|++.-++.
T Consensus 210 ~~yDVLvVGgGPAgaaAAiYaARKGiRTGl~a 241 (520)
T COG3634 210 DAYDVLVVGGGPAGAAAAIYAARKGIRTGLVA 241 (520)
T ss_pred CCceEEEEcCCcchhHHHHHHHhhcchhhhhh
Confidence 36899999999999999999999999887664
No 289
>PF13454 NAD_binding_9: FAD-NAD(P)-binding
Probab=97.79 E-value=3.5e-05 Score=47.47 Aligned_cols=31 Identities=35% Similarity=0.388 Sum_probs=27.2
Q ss_pred EEECCCHHHHHHHHHHHHC-----CCceEEEcCCCC
Q 047339 9 VIIGAGIAGLATALALKRL-----GIKPLVLEKSDG 39 (115)
Q Consensus 9 ~IvG~G~~Gl~~A~~l~~~-----g~~v~viE~~~~ 39 (115)
+|||+|++|++++..|.+. ..+|+|||+.+.
T Consensus 1 AIIG~G~~G~~~l~~L~~~~~~~~~~~I~vfd~~~~ 36 (156)
T PF13454_consen 1 AIIGGGPSGLAVLERLLRQADPKPPLEITVFDPSPF 36 (156)
T ss_pred CEECcCHHHHHHHHHHHHhcCCCCCCEEEEEcCCCc
Confidence 5999999999999999887 478999998554
No 290
>PRK06115 dihydrolipoamide dehydrogenase; Reviewed
Probab=97.79 E-value=6.3e-05 Score=53.90 Aligned_cols=59 Identities=32% Similarity=0.414 Sum_probs=42.1
Q ss_pred ccccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCCCCCcceeeeeCccHHHHHHHcCCh
Q 047339 4 VEKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGLRGTGAAINFAPNAWLALDALGVS 63 (115)
Q Consensus 4 ~~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~~~~~~~~~~~~~~~~~~l~~~g~~ 63 (115)
.+.+++|||+|+.|+.+|..+++.|.+|+++|+.+.+... ....+.....+.|+..|+.
T Consensus 173 ~~~~vvIIGgG~ig~E~A~~l~~~G~~Vtlie~~~~il~~-~d~~~~~~l~~~l~~~gV~ 231 (466)
T PRK06115 173 VPKHLVVIGAGVIGLELGSVWRRLGAQVTVVEYLDRICPG-TDTETAKTLQKALTKQGMK 231 (466)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCeEEEEeCCCCCCCC-CCHHHHHHHHHHHHhcCCE
Confidence 3578999999999999999999999999999987765321 1111222344556666654
No 291
>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]
Probab=97.77 E-value=7.3e-05 Score=53.48 Aligned_cols=39 Identities=36% Similarity=0.537 Sum_probs=35.7
Q ss_pred ccccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCCCCC
Q 047339 4 VEKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGLRG 42 (115)
Q Consensus 4 ~~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~~~~ 42 (115)
.+.+++|||||+.|+-+|..+++.|.+|+|+|+.+...+
T Consensus 172 lP~~lvIiGgG~IGlE~a~~~~~LG~~VTiie~~~~iLp 210 (454)
T COG1249 172 LPKSLVIVGGGYIGLEFASVFAALGSKVTVVERGDRILP 210 (454)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCCCC
Confidence 567899999999999999999999999999999988643
No 292
>PF00996 GDI: GDP dissociation inhibitor; InterPro: IPR018203 Rab proteins constitute a family of small GTPases that serve a regulatory role in vesicular membrane traffic [, ]; C-terminal geranylgeranylation is crucial for their membrane association and function. This post-translational modification is catalysed by Rab geranylgeranyl transferase (Rab-GGTase), a multi-subunit enzyme that contains a catalytic heterodimer and an accessory component, termed Rab escort protein (REP)-1 []. REP-1 presents newly- synthesised Rab proteins to the catalytic component, and forms a stable complex with the prenylated proteins following the transfer reaction. The mechanism of REP-1-mediated membrane association of Rab5 is similar to that mediated by Rab GDP dissociation inhibitor (GDI). REP-1 and Rab GDI also share other functional properties, including the ability to inhibit the release of GDP and to remove Rab proteins from membranes. The crystal structure of the bovine alpha-isoform of Rab GDI has been determined to a resolution of 1.81A []. The protein is composed of two main structural units: a large complex multi-sheet domain I, and a smaller alpha-helical domain II. The structural organisation of domain I is closely related to FAD-containing monooxygenases and oxidases []. Conserved regions common to GDI and the choroideraemia gene product, which delivers Rab to catalytic subunits of Rab geranylgeranyltransferase II, are clustered on one face of the domain []. The two most conserved regions form a compact structure at the apex of the molecule; site-directed mutagenesis has shown these regions to play a critical role in the binding of Rab proteins [].; PDB: 1VG9_C 1VG0_A 1LTX_R 3P1W_A 3CPH_H 3CPJ_G 3CPI_H 1UKV_G 2BCG_G 1GND_A ....
Probab=97.77 E-value=6.4e-05 Score=53.48 Aligned_cols=45 Identities=38% Similarity=0.515 Sum_probs=34.1
Q ss_pred ccccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCCCCCcceeee
Q 047339 4 VEKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGLRGTGAAIN 48 (115)
Q Consensus 4 ~~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~~~~~~~~~~ 48 (115)
.++||+|+|.|+.-+.+|..|++.|.+|+.+|+++.-++...++.
T Consensus 3 ~~yDviI~GTGl~esila~als~~GkkVLhiD~n~yYGg~~asl~ 47 (438)
T PF00996_consen 3 EEYDVIILGTGLTESILAAALSRSGKKVLHIDRNDYYGGEWASLN 47 (438)
T ss_dssp SBESEEEE--SHHHHHHHHHHHHTT--EEEE-SSSSSCGGG-EE-
T ss_pred ccceEEEECCCcHHHHHHHHHHhcCCEEEecCCCCCcCCchhccc
Confidence 459999999999999999999999999999999998776666654
No 293
>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]
Probab=97.75 E-value=6.1e-05 Score=53.01 Aligned_cols=37 Identities=30% Similarity=0.505 Sum_probs=32.9
Q ss_pred ccccEEEECCCHHHHHHHHHHHHCC--CceEEEcCCCCC
Q 047339 4 VEKDVVIIGAGIAGLATALALKRLG--IKPLVLEKSDGL 40 (115)
Q Consensus 4 ~~~~v~IvG~G~~Gl~~A~~l~~~g--~~v~viE~~~~~ 40 (115)
++.+|+|||||.+|+.+|..|.+.. .+++++|+++..
T Consensus 2 ~~~~iVIlGgGfgGl~~a~~l~~~~~~~~itLVd~~~~h 40 (405)
T COG1252 2 MKKRIVILGGGFGGLSAAKRLARKLPDVEITLVDRRDYH 40 (405)
T ss_pred CCceEEEECCcHHHHHHHHHhhhcCCCCcEEEEeCCCcc
Confidence 4578999999999999999999975 899999998763
No 294
>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein. Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.
Probab=97.75 E-value=4.3e-05 Score=52.86 Aligned_cols=34 Identities=18% Similarity=0.258 Sum_probs=29.2
Q ss_pred cEEEECCCHHHHHHHHHHHH---CCCceEEEcCCCCC
Q 047339 7 DVVIIGAGIAGLATALALKR---LGIKPLVLEKSDGL 40 (115)
Q Consensus 7 ~v~IvG~G~~Gl~~A~~l~~---~g~~v~viE~~~~~ 40 (115)
+|+|||||++|+.+|..+.+ .+++|+|+|+++..
T Consensus 1 ~vvIiGgG~aG~~~a~~l~~~~~~~~~I~li~~~~~~ 37 (364)
T TIGR03169 1 HLVLIGGGHTHALVLRRWAMKPLPGVRVTLINPSSTT 37 (364)
T ss_pred CEEEECCcHHHHHHHHHhcCcCCCCCEEEEECCCCCC
Confidence 58999999999999999864 36899999987753
No 295
>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.
Probab=97.74 E-value=7.8e-05 Score=53.18 Aligned_cols=36 Identities=36% Similarity=0.558 Sum_probs=33.2
Q ss_pred cccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCCC
Q 047339 5 EKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGL 40 (115)
Q Consensus 5 ~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~~ 40 (115)
..+++|||||++|+.+|..|++.|.+|+++|+.+..
T Consensus 170 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtli~~~~~~ 205 (461)
T TIGR01350 170 PESLVIIGGGVIGIEFASIFASLGSKVTVIEMLDRI 205 (461)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCCC
Confidence 468999999999999999999999999999988765
No 296
>PF06039 Mqo: Malate:quinone oxidoreductase (Mqo); InterPro: IPR006231 The membrane-associated enzyme, malate:quinone-oxidoreductase, is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in Escherichia coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase []. ; GO: 0008924 malate dehydrogenase (quinone) activity, 0006099 tricarboxylic acid cycle, 0055114 oxidation-reduction process
Probab=97.72 E-value=6.7e-05 Score=53.41 Aligned_cols=37 Identities=35% Similarity=0.499 Sum_probs=33.2
Q ss_pred ccccEEEECCCHHHHHHHHHHHHC--CCceEEEcCCCCC
Q 047339 4 VEKDVVIIGAGIAGLATALALKRL--GIKPLVLEKSDGL 40 (115)
Q Consensus 4 ~~~~v~IvG~G~~Gl~~A~~l~~~--g~~v~viE~~~~~ 40 (115)
.++||++||||+.|.+++..|++. ..+|.|+||.+.+
T Consensus 2 ~~~DVvLIGgGImsaTL~~~L~~l~p~~~I~i~Erl~~~ 40 (488)
T PF06039_consen 2 KEYDVVLIGGGIMSATLGYLLKELEPDWSIAIFERLDSV 40 (488)
T ss_pred CceeEEEECchHHHHHHHHHHHHhCCCCeEEEEEecCcc
Confidence 468999999999999999999994 5899999998765
No 297
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=97.71 E-value=6.8e-05 Score=50.61 Aligned_cols=40 Identities=33% Similarity=0.483 Sum_probs=34.4
Q ss_pred CCCccccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCCC
Q 047339 1 METVEKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGL 40 (115)
Q Consensus 1 m~~~~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~~ 40 (115)
|+....+|.|||+|..|...|..+++.|++|+++|.++..
T Consensus 1 ~~~~~~~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~~~ 40 (286)
T PRK07819 1 MSDAIQRVGVVGAGQMGAGIAEVCARAGVDVLVFETTEEL 40 (286)
T ss_pred CCCCccEEEEEcccHHHHHHHHHHHhCCCEEEEEECCHHH
Confidence 4444457999999999999999999999999999987653
No 298
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=97.71 E-value=5.5e-05 Score=47.74 Aligned_cols=33 Identities=30% Similarity=0.473 Sum_probs=28.6
Q ss_pred cEEEECCCHHHHHHHHHHHHCCCceEEEcCCCC
Q 047339 7 DVVIIGAGIAGLATALALKRLGIKPLVLEKSDG 39 (115)
Q Consensus 7 ~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~ 39 (115)
+|.|||+|..|...|..++..|++|.++|.++.
T Consensus 1 ~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~~ 33 (180)
T PF02737_consen 1 KVAVIGAGTMGRGIAALFARAGYEVTLYDRSPE 33 (180)
T ss_dssp EEEEES-SHHHHHHHHHHHHTTSEEEEE-SSHH
T ss_pred CEEEEcCCHHHHHHHHHHHhCCCcEEEEECChH
Confidence 589999999999999999999999999998654
No 299
>TIGR02053 MerA mercuric reductase. This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.
Probab=97.70 E-value=0.0001 Score=52.75 Aligned_cols=36 Identities=36% Similarity=0.623 Sum_probs=33.1
Q ss_pred cccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCCC
Q 047339 5 EKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGL 40 (115)
Q Consensus 5 ~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~~ 40 (115)
..+++|||+|..|+.+|..|++.|.+|+++++.+.+
T Consensus 166 ~~~vvIIGgG~~g~E~A~~l~~~g~~Vtli~~~~~~ 201 (463)
T TIGR02053 166 PESLAVIGGGAIGVELAQAFARLGSEVTILQRSDRL 201 (463)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCcC
Confidence 468999999999999999999999999999988665
No 300
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=97.70 E-value=0.0001 Score=52.71 Aligned_cols=36 Identities=31% Similarity=0.473 Sum_probs=33.0
Q ss_pred cccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCCC
Q 047339 5 EKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGL 40 (115)
Q Consensus 5 ~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~~ 40 (115)
..+++|||||+.|+.+|..|++.|.+|+++++.+..
T Consensus 172 ~~~vvVvGgG~~g~E~A~~l~~~g~~Vtli~~~~~~ 207 (462)
T PRK06416 172 PKSLVVIGGGYIGVEFASAYASLGAEVTIVEALPRI 207 (462)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCCc
Confidence 468999999999999999999999999999987765
No 301
>COG0445 GidA Flavin-dependent tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Cell cycle control, cell division, chromosome partitioning]
Probab=97.69 E-value=3.8e-05 Score=55.61 Aligned_cols=35 Identities=46% Similarity=0.677 Sum_probs=31.4
Q ss_pred cccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCC
Q 047339 5 EKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDG 39 (115)
Q Consensus 5 ~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~ 39 (115)
.+||+|||||-+|+.+|+..++.|.+++++-.+..
T Consensus 4 ~~DVIVIGgGHAG~EAA~AaARmG~ktlLlT~~~d 38 (621)
T COG0445 4 EYDVIVIGGGHAGVEAALAAARMGAKTLLLTLNLD 38 (621)
T ss_pred CCceEEECCCccchHHHHhhhccCCeEEEEEcCCC
Confidence 48999999999999999999999999998875543
No 302
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=97.69 E-value=9.1e-05 Score=52.56 Aligned_cols=36 Identities=39% Similarity=0.593 Sum_probs=32.5
Q ss_pred cccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCCC
Q 047339 5 EKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGL 40 (115)
Q Consensus 5 ~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~~ 40 (115)
..+++|||+|++|+.+|..+.+.|.+|+++++.+..
T Consensus 149 ~~~vvVvGgG~~g~e~A~~l~~~g~~Vtli~~~~~~ 184 (444)
T PRK09564 149 IKNIVIIGAGFIGLEAVEAAKHLGKNVRIIQLEDRI 184 (444)
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCcEEEEeCCccc
Confidence 368999999999999999999999999999987654
No 303
>PRK07818 dihydrolipoamide dehydrogenase; Reviewed
Probab=97.68 E-value=9.8e-05 Score=52.87 Aligned_cols=58 Identities=28% Similarity=0.355 Sum_probs=42.3
Q ss_pred cccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCCCCCcceeeeeCccHHHHHHHcCCh
Q 047339 5 EKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGLRGTGAAINFAPNAWLALDALGVS 63 (115)
Q Consensus 5 ~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~~~~~~~~~~~~~~~~~~l~~~g~~ 63 (115)
+.+++|||+|+.|+.+|..|++.|.+|+|+|+.+...+.. .-.+.....+.|++.|+.
T Consensus 172 ~~~vvVIGgG~ig~E~A~~l~~~G~~Vtlv~~~~~~l~~~-d~~~~~~l~~~l~~~gV~ 229 (466)
T PRK07818 172 PKSIVIAGAGAIGMEFAYVLKNYGVDVTIVEFLDRALPNE-DAEVSKEIAKQYKKLGVK 229 (466)
T ss_pred CCeEEEECCcHHHHHHHHHHHHcCCeEEEEecCCCcCCcc-CHHHHHHHHHHHHHCCCE
Confidence 4689999999999999999999999999999876643221 111223345566666654
No 304
>KOG2852 consensus Possible oxidoreductase [General function prediction only]
Probab=97.68 E-value=1.9e-05 Score=53.20 Aligned_cols=36 Identities=31% Similarity=0.485 Sum_probs=32.3
Q ss_pred cccEEEECCCHHHHHHHHHHHHCC------CceEEEcCCCCC
Q 047339 5 EKDVVIIGAGIAGLATALALKRLG------IKPLVLEKSDGL 40 (115)
Q Consensus 5 ~~~v~IvG~G~~Gl~~A~~l~~~g------~~v~viE~~~~~ 40 (115)
.++|+|||||+.|.++|++|++.+ +.++|+|...-.
T Consensus 10 sk~I~IvGGGIiGvctayyLt~~~sf~~~~~~ItifEs~~IA 51 (380)
T KOG2852|consen 10 SKKIVIVGGGIIGVCTAYYLTEHPSFKKGELDITIFESKEIA 51 (380)
T ss_pred ceEEEEECCCceeeeeehhhhcCCccCCCceeEEEEeecccc
Confidence 578999999999999999999987 899999976643
No 305
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=97.67 E-value=0.0001 Score=44.84 Aligned_cols=31 Identities=32% Similarity=0.459 Sum_probs=29.2
Q ss_pred EEEECCCHHHHHHHHHHHHCCCceEEEcCCC
Q 047339 8 VVIIGAGIAGLATALALKRLGIKPLVLEKSD 38 (115)
Q Consensus 8 v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~ 38 (115)
|+|+|+|..|+..|..|++.|++|.++.+.+
T Consensus 1 I~I~G~GaiG~~~a~~L~~~g~~V~l~~r~~ 31 (151)
T PF02558_consen 1 ILIIGAGAIGSLYAARLAQAGHDVTLVSRSP 31 (151)
T ss_dssp EEEESTSHHHHHHHHHHHHTTCEEEEEESHH
T ss_pred CEEECcCHHHHHHHHHHHHCCCceEEEEccc
Confidence 6899999999999999999999999998765
No 306
>PRK06370 mercuric reductase; Validated
Probab=97.67 E-value=0.0001 Score=52.68 Aligned_cols=37 Identities=35% Similarity=0.562 Sum_probs=33.6
Q ss_pred cccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCCCC
Q 047339 5 EKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGLR 41 (115)
Q Consensus 5 ~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~~~ 41 (115)
..+++|||+|+.|+.+|..|++.|.+|+++++.+...
T Consensus 171 ~~~vvVIGgG~~g~E~A~~l~~~G~~Vtli~~~~~~l 207 (463)
T PRK06370 171 PEHLVIIGGGYIGLEFAQMFRRFGSEVTVIERGPRLL 207 (463)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCCCC
Confidence 4689999999999999999999999999999887653
No 307
>KOG4254 consensus Phytoene desaturase [Coenzyme transport and metabolism]
Probab=97.64 E-value=6.6e-05 Score=53.31 Aligned_cols=39 Identities=41% Similarity=0.566 Sum_probs=35.0
Q ss_pred ccccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCCCCC
Q 047339 4 VEKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGLRG 42 (115)
Q Consensus 4 ~~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~~~~ 42 (115)
.++|++|||+|.-||++|.+|++.|.+|.++|+....++
T Consensus 13 ~~ydavvig~GhnGL~aaayl~r~g~~V~vlerrhv~gG 51 (561)
T KOG4254|consen 13 PEYDAVVIGGGHNGLTAAAYLARYGQSVAVLERRHVIGG 51 (561)
T ss_pred cccceEEecCCccchhHHHHHHhcCcceEEEEEeeecCc
Confidence 479999999999999999999999999999999855443
No 308
>PRK05708 2-dehydropantoate 2-reductase; Provisional
Probab=97.64 E-value=0.00011 Score=49.97 Aligned_cols=34 Identities=26% Similarity=0.299 Sum_probs=31.1
Q ss_pred cccEEEECCCHHHHHHHHHHHHCCCceEEEcCCC
Q 047339 5 EKDVVIIGAGIAGLATALALKRLGIKPLVLEKSD 38 (115)
Q Consensus 5 ~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~ 38 (115)
.++|+|+|+|..|...|..|++.|.+|+++.+..
T Consensus 2 ~m~I~IiGaGaiG~~~a~~L~~~G~~V~lv~r~~ 35 (305)
T PRK05708 2 SMTWHILGAGSLGSLWACRLARAGLPVRLILRDR 35 (305)
T ss_pred CceEEEECCCHHHHHHHHHHHhCCCCeEEEEech
Confidence 3579999999999999999999999999999853
No 309
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=97.64 E-value=0.00012 Score=52.28 Aligned_cols=36 Identities=31% Similarity=0.551 Sum_probs=33.3
Q ss_pred cccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCCC
Q 047339 5 EKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGL 40 (115)
Q Consensus 5 ~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~~ 40 (115)
+.+++|||+|+.|+.+|..+++.|.+|+++|+.+.+
T Consensus 175 ~~~v~IiGgG~~g~E~A~~l~~~g~~Vtli~~~~~~ 210 (461)
T PRK05249 175 PRSLIIYGAGVIGCEYASIFAALGVKVTLINTRDRL 210 (461)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCc
Confidence 468999999999999999999999999999988765
No 310
>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit.
Probab=97.63 E-value=8.4e-05 Score=56.49 Aligned_cols=35 Identities=37% Similarity=0.723 Sum_probs=32.2
Q ss_pred ccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCCC
Q 047339 6 KDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGL 40 (115)
Q Consensus 6 ~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~~ 40 (115)
.+++|||||+.|+.+|..|++.|.+|+|+|+.+..
T Consensus 141 k~vvVVGgG~~GlE~A~~L~~~G~~Vtvv~~~~~l 175 (785)
T TIGR02374 141 KKAAVIGGGLLGLEAAVGLQNLGMDVSVIHHAPGL 175 (785)
T ss_pred CeEEEECCCHHHHHHHHHHHhcCCeEEEEccCCch
Confidence 57999999999999999999999999999987654
No 311
>PRK14989 nitrite reductase subunit NirD; Provisional
Probab=97.59 E-value=0.00014 Score=55.68 Aligned_cols=36 Identities=19% Similarity=0.233 Sum_probs=31.2
Q ss_pred cccEEEECCCHHHHHHHHHHHHC----CCceEEEcCCCCC
Q 047339 5 EKDVVIIGAGIAGLATALALKRL----GIKPLVLEKSDGL 40 (115)
Q Consensus 5 ~~~v~IvG~G~~Gl~~A~~l~~~----g~~v~viE~~~~~ 40 (115)
+.+|+|||+|++|+.+|..|.+. +++|+|+++.+.+
T Consensus 3 ~~kIVIVG~G~AG~~aa~~L~~~~~~~~~~Itvi~~e~~~ 42 (847)
T PRK14989 3 KVRLAIIGNGMVGHRFIEDLLDKADAANFDITVFCEEPRI 42 (847)
T ss_pred CCcEEEECCCHHHHHHHHHHHhhCCCCCCeEEEEECCCCC
Confidence 45899999999999999999764 4899999988775
No 312
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=97.59 E-value=0.00013 Score=51.93 Aligned_cols=58 Identities=19% Similarity=0.323 Sum_probs=40.8
Q ss_pred cccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCCCCCcceeeeeCccHHHHHHHcCCh
Q 047339 5 EKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGLRGTGAAINFAPNAWLALDALGVS 63 (115)
Q Consensus 5 ~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~~~~~~~~~~~~~~~~~~l~~~g~~ 63 (115)
..+++|||||+.|+.+|..|++.|.+|+++++.+..... ..-.+.....+.|++.|+.
T Consensus 148 ~~~vvViGgG~ig~E~A~~l~~~g~~Vtli~~~~~l~~~-~d~~~~~~l~~~l~~~gI~ 205 (438)
T PRK13512 148 VDKALVVGAGYISLEVLENLYERGLHPTLIHRSDKINKL-MDADMNQPILDELDKREIP 205 (438)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCcEEEEecccccchh-cCHHHHHHHHHHHHhcCCE
Confidence 357999999999999999999999999999987654221 1111222344556666653
No 313
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=97.58 E-value=0.00014 Score=52.33 Aligned_cols=34 Identities=38% Similarity=0.586 Sum_probs=30.9
Q ss_pred cccEEEECCCHHHHHHHHHHHHCCCceEEEcCCC
Q 047339 5 EKDVVIIGAGIAGLATALALKRLGIKPLVLEKSD 38 (115)
Q Consensus 5 ~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~ 38 (115)
..+|+|+|+|.+|+.+|..|+++|++|+++|+.+
T Consensus 16 ~~~v~viG~G~~G~~~A~~L~~~G~~V~~~d~~~ 49 (480)
T PRK01438 16 GLRVVVAGLGVSGFAAADALLELGARVTVVDDGD 49 (480)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCc
Confidence 3579999999999999999999999999999654
No 314
>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=97.58 E-value=0.00013 Score=52.14 Aligned_cols=34 Identities=32% Similarity=0.441 Sum_probs=31.1
Q ss_pred cEEEECCCHHHHHHHHHHHHCCCceEEEcCCCCC
Q 047339 7 DVVIIGAGIAGLATALALKRLGIKPLVLEKSDGL 40 (115)
Q Consensus 7 ~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~~ 40 (115)
+|.|||.|++|+++|..|.++|+.|+++|+...+
T Consensus 2 ~v~viG~G~sG~s~a~~l~~~G~~V~~~D~~~~~ 35 (459)
T PRK02705 2 IAHVIGLGRSGIAAARLLKAQGWEVVVSDRNDSP 35 (459)
T ss_pred eEEEEccCHHHHHHHHHHHHCCCEEEEECCCCch
Confidence 5899999999999999999999999999987553
No 315
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=97.57 E-value=9.1e-05 Score=46.98 Aligned_cols=33 Identities=27% Similarity=0.463 Sum_probs=27.4
Q ss_pred cEEEECCCHHHHHHHHHHHHCCCceEEEcCCCC
Q 047339 7 DVVIIGAGIAGLATALALKRLGIKPLVLEKSDG 39 (115)
Q Consensus 7 ~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~ 39 (115)
+|.|+|.|..|+.+|..|++.|++|..+|.++.
T Consensus 2 ~I~ViGlGyvGl~~A~~lA~~G~~V~g~D~~~~ 34 (185)
T PF03721_consen 2 KIAVIGLGYVGLPLAAALAEKGHQVIGVDIDEE 34 (185)
T ss_dssp EEEEE--STTHHHHHHHHHHTTSEEEEE-S-HH
T ss_pred EEEEECCCcchHHHHHHHHhCCCEEEEEeCChH
Confidence 799999999999999999999999999997764
No 316
>PRK14989 nitrite reductase subunit NirD; Provisional
Probab=97.57 E-value=0.00012 Score=56.05 Aligned_cols=58 Identities=28% Similarity=0.359 Sum_probs=41.1
Q ss_pred ccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCCCCCcceeeeeCccHHHHHHHcCCh
Q 047339 6 KDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGLRGTGAAINFAPNAWLALDALGVS 63 (115)
Q Consensus 6 ~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~~~~~~~~~~~~~~~~~~l~~~g~~ 63 (115)
.+++|||||+.|+-+|..|++.|.+|+|+|+.+........-.......+.|+..|+.
T Consensus 146 k~vvVIGgG~iGlE~A~~L~~~G~~VtvVe~~~~ll~~~ld~~~~~~l~~~L~~~GV~ 203 (847)
T PRK14989 146 KRGAVVGGGLLGLEAAGALKNLGVETHVIEFAPMLMAEQLDQMGGEQLRRKIESMGVR 203 (847)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEeccccchhhhcCHHHHHHHHHHHHHCCCE
Confidence 5799999999999999999999999999998765422111111122344566666654
No 317
>PRK06327 dihydrolipoamide dehydrogenase; Validated
Probab=97.56 E-value=0.00021 Score=51.37 Aligned_cols=58 Identities=29% Similarity=0.417 Sum_probs=41.1
Q ss_pred cccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCCCCCcceeeeeCccHHHHHHHcCCh
Q 047339 5 EKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGLRGTGAAINFAPNAWLALDALGVS 63 (115)
Q Consensus 5 ~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~~~~~~~~~~~~~~~~~~l~~~g~~ 63 (115)
+.+++|||+|+.|+.+|..|++.|.+|+++++.+..... ....+.....+.|+..|+.
T Consensus 183 ~~~vvVvGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~~-~d~~~~~~~~~~l~~~gi~ 240 (475)
T PRK06327 183 PKKLAVIGAGVIGLELGSVWRRLGAEVTILEALPAFLAA-ADEQVAKEAAKAFTKQGLD 240 (475)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEeCCCccCCc-CCHHHHHHHHHHHHHcCcE
Confidence 468999999999999999999999999999987764321 1111222334455555643
No 318
>PRK06467 dihydrolipoamide dehydrogenase; Reviewed
Probab=97.56 E-value=0.00023 Score=51.15 Aligned_cols=36 Identities=33% Similarity=0.532 Sum_probs=33.2
Q ss_pred cccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCCC
Q 047339 5 EKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGL 40 (115)
Q Consensus 5 ~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~~ 40 (115)
+.+++|||+|+.|+.+|..+++.|.+|+|+|+.+..
T Consensus 174 ~~~vvIiGgG~iG~E~A~~l~~~G~~Vtlv~~~~~i 209 (471)
T PRK06467 174 PKRLLVMGGGIIGLEMGTVYHRLGSEVDVVEMFDQV 209 (471)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCCEEEEecCCCC
Confidence 468999999999999999999999999999988765
No 319
>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.
Probab=97.55 E-value=0.00021 Score=50.99 Aligned_cols=36 Identities=19% Similarity=0.405 Sum_probs=32.8
Q ss_pred cccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCCC
Q 047339 5 EKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGL 40 (115)
Q Consensus 5 ~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~~ 40 (115)
..+++|||+|+.|+.+|..+++.|.+|+++++.+..
T Consensus 166 ~~~vvVIGgG~~g~E~A~~l~~~G~~Vtli~~~~~~ 201 (446)
T TIGR01424 166 PKSILILGGGYIAVEFAGIWRGLGVQVTLIYRGELI 201 (446)
T ss_pred CCeEEEECCcHHHHHHHHHHHHcCCeEEEEEeCCCC
Confidence 467999999999999999999999999999987664
No 320
>PF01593 Amino_oxidase: Flavin containing amine oxidoreductase This is a subset of the Pfam family; InterPro: IPR002937 This entry consists of various amine oxidases, including maize polyamine oxidase (PAO) [], L-amino acid oxidases (LAO) and various flavin containing monoamine oxidases (MAO). The aligned region includes the flavin binding site of these enzymes. In vertebrates MAO plays an important role in regulating the intracellular levels of amines via their oxidation; these include various neurotransmitters, neurotoxins and trace amines []. In lower eukaryotes such as aspergillus and in bacteria the main role of amine oxidases is to provide a source of ammonium []. PAOs in plants, bacteria and protozoa oxidise spermidine and spermine to an aminobutyral, diaminopropane and hydrogen peroxide and are involved in the catabolism of polyamines []. Other members of this family include tryptophan 2-monooxygenase, putrescine oxidase, corticosteroid binding proteins and antibacterial glycoproteins.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2Z3Y_A 2UXN_A 2Y48_A 2HKO_A 2XAF_A 2X0L_A 2XAJ_A 2UXX_A 2V1D_A 2Z5U_A ....
Probab=97.55 E-value=0.00016 Score=50.14 Aligned_cols=32 Identities=44% Similarity=0.499 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHCCCceEEEcCCCCCCCccee
Q 047339 15 IAGLATALALKRLGIKPLVLEKSDGLRGTGAA 46 (115)
Q Consensus 15 ~~Gl~~A~~l~~~g~~v~viE~~~~~~~~~~~ 46 (115)
++||++|+.|+++|++|+|+|+++.+++...+
T Consensus 1 iaGL~aA~~L~~~G~~v~vlEa~~r~GGr~~t 32 (450)
T PF01593_consen 1 IAGLAAAYYLAKAGYDVTVLEASDRVGGRIRT 32 (450)
T ss_dssp HHHHHHHHHHHHTTTEEEEEESSSSSBTTS-E
T ss_pred ChHHHHHHHHHhCCCCEEEEEcCCCCCcceEE
Confidence 58999999999999999999999988765443
No 321
>KOG2404 consensus Fumarate reductase, flavoprotein subunit [Energy production and conversion]
Probab=97.53 E-value=0.00021 Score=49.13 Aligned_cols=37 Identities=35% Similarity=0.588 Sum_probs=32.2
Q ss_pred cEEEECCCHHHHHHHHHHHHCCCceEEEcCCCCCCCc
Q 047339 7 DVVIIGAGIAGLATALALKRLGIKPLVLEKSDGLRGT 43 (115)
Q Consensus 7 ~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~~~~~ 43 (115)
.++|||+|++||+++..+-..|-.|+++|+....++.
T Consensus 11 pvvVIGgGLAGLsasn~iin~gg~V~llek~~s~GGN 47 (477)
T KOG2404|consen 11 PVVVIGGGLAGLSASNDIINKGGIVILLEKAGSIGGN 47 (477)
T ss_pred cEEEECCchhhhhhHHHHHhcCCeEEEEeccCCcCCc
Confidence 5999999999999999988887779999998876553
No 322
>PRK07845 flavoprotein disulfide reductase; Reviewed
Probab=97.53 E-value=0.00021 Score=51.26 Aligned_cols=58 Identities=19% Similarity=0.305 Sum_probs=41.9
Q ss_pred cccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCCCCCcceeeeeCccHHHHHHHcCCh
Q 047339 5 EKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGLRGTGAAINFAPNAWLALDALGVS 63 (115)
Q Consensus 5 ~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~~~~~~~~~~~~~~~~~~l~~~g~~ 63 (115)
+.+++|||+|..|+.+|..|++.|.+|+++++.+...... ...+.....+.|+..|+.
T Consensus 177 ~~~vvVIGgG~ig~E~A~~l~~~g~~Vtli~~~~~~l~~~-d~~~~~~l~~~L~~~gV~ 234 (466)
T PRK07845 177 PEHLIVVGSGVTGAEFASAYTELGVKVTLVSSRDRVLPGE-DADAAEVLEEVFARRGMT 234 (466)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCcCCCCC-CHHHHHHHHHHHHHCCcE
Confidence 4579999999999999999999999999999876643221 111223344566666654
No 323
>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=97.53 E-value=0.00025 Score=50.47 Aligned_cols=58 Identities=24% Similarity=0.274 Sum_probs=40.9
Q ss_pred cccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCCCCCcceeeeeCccHHHHHHHcCCh
Q 047339 5 EKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGLRGTGAAINFAPNAWLALDALGVS 63 (115)
Q Consensus 5 ~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~~~~~~~~~~~~~~~~~~l~~~g~~ 63 (115)
+.+++|||+|+.|+.+|..|++.|.+|+++++.+...... .-.+.....+.|++.|+.
T Consensus 158 ~~~v~ViGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~~~-~~~~~~~l~~~l~~~gV~ 215 (441)
T PRK08010 158 PGHLGILGGGYIGVEFASMFANFGSKVTILEAASLFLPRE-DRDIADNIATILRDQGVD 215 (441)
T ss_pred CCeEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCCCc-CHHHHHHHHHHHHhCCCE
Confidence 4689999999999999999999999999999876543211 111222234456665653
No 324
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=97.53 E-value=0.00021 Score=50.86 Aligned_cols=38 Identities=42% Similarity=0.700 Sum_probs=33.5
Q ss_pred CCCccccEEEECCCHHHHHHHHHHHHCCCceEEEcCCC
Q 047339 1 METVEKDVVIIGAGIAGLATALALKRLGIKPLVLEKSD 38 (115)
Q Consensus 1 m~~~~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~ 38 (115)
|.....+++|+|+|..|+.+|..|++.|++|+++|+..
T Consensus 1 ~~~~~k~v~iiG~g~~G~~~A~~l~~~G~~V~~~d~~~ 38 (450)
T PRK14106 1 MELKGKKVLVVGAGVSGLALAKFLKKLGAKVILTDEKE 38 (450)
T ss_pred CCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCc
Confidence 43345789999999999999999999999999999864
No 325
>PRK07846 mycothione reductase; Reviewed
Probab=97.52 E-value=0.0002 Score=51.25 Aligned_cols=36 Identities=28% Similarity=0.501 Sum_probs=33.2
Q ss_pred cccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCCC
Q 047339 5 EKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGL 40 (115)
Q Consensus 5 ~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~~ 40 (115)
+.+++|||+|+.|+.+|..|++.|.+|+++++.+..
T Consensus 166 ~~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~~~l 201 (451)
T PRK07846 166 PESLVIVGGGFIAAEFAHVFSALGVRVTVVNRSGRL 201 (451)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCcc
Confidence 578999999999999999999999999999987764
No 326
>PLN02507 glutathione reductase
Probab=97.52 E-value=0.00019 Score=51.95 Aligned_cols=58 Identities=14% Similarity=0.146 Sum_probs=40.7
Q ss_pred cccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCCCCCcceeeeeCccHHHHHHHcCCh
Q 047339 5 EKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGLRGTGAAINFAPNAWLALDALGVS 63 (115)
Q Consensus 5 ~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~~~~~~~~~~~~~~~~~~l~~~g~~ 63 (115)
..+++|||+|+.|+-+|..+++.|.+|+|+++.+.+... ..-.+.....+.|++.|+.
T Consensus 203 ~k~vvVIGgG~ig~E~A~~l~~~G~~Vtli~~~~~~l~~-~d~~~~~~l~~~l~~~GI~ 260 (499)
T PLN02507 203 PKRAVVLGGGYIAVEFASIWRGMGATVDLFFRKELPLRG-FDDEMRAVVARNLEGRGIN 260 (499)
T ss_pred CCeEEEECCcHHHHHHHHHHHHcCCeEEEEEecCCcCcc-cCHHHHHHHHHHHHhCCCE
Confidence 468999999999999999999999999999987654221 1111222233456666654
No 327
>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=97.52 E-value=0.00016 Score=49.23 Aligned_cols=34 Identities=32% Similarity=0.467 Sum_probs=31.2
Q ss_pred ccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCC
Q 047339 6 KDVVIIGAGIAGLATALALKRLGIKPLVLEKSDG 39 (115)
Q Consensus 6 ~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~ 39 (115)
.+|.|||+|..|...|..|+++|++|+++++++.
T Consensus 3 ~~V~VIG~G~mG~~iA~~la~~G~~V~v~d~~~~ 36 (308)
T PRK06129 3 GSVAIIGAGLIGRAWAIVFARAGHEVRLWDADPA 36 (308)
T ss_pred cEEEEECccHHHHHHHHHHHHCCCeeEEEeCCHH
Confidence 3699999999999999999999999999998753
No 328
>PRK08229 2-dehydropantoate 2-reductase; Provisional
Probab=97.50 E-value=0.00021 Score=49.12 Aligned_cols=33 Identities=18% Similarity=0.312 Sum_probs=30.6
Q ss_pred ccEEEECCCHHHHHHHHHHHHCCCceEEEcCCC
Q 047339 6 KDVVIIGAGIAGLATALALKRLGIKPLVLEKSD 38 (115)
Q Consensus 6 ~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~ 38 (115)
.+|.|||+|..|...|..|+++|++|+++++.+
T Consensus 3 mkI~IiG~G~mG~~~A~~L~~~G~~V~~~~r~~ 35 (341)
T PRK08229 3 ARICVLGAGSIGCYLGGRLAAAGADVTLIGRAR 35 (341)
T ss_pred ceEEEECCCHHHHHHHHHHHhcCCcEEEEecHH
Confidence 579999999999999999999999999999754
No 329
>PRK06116 glutathione reductase; Validated
Probab=97.49 E-value=0.00027 Score=50.40 Aligned_cols=58 Identities=21% Similarity=0.295 Sum_probs=40.9
Q ss_pred cccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCCCCCcceeeeeCccHHHHHHHcCCh
Q 047339 5 EKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGLRGTGAAINFAPNAWLALDALGVS 63 (115)
Q Consensus 5 ~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~~~~~~~~~~~~~~~~~~l~~~g~~ 63 (115)
+.+++|||+|+.|+.+|..|++.|.+|+++++.+.+.. ...-.+.....+.|+..|+.
T Consensus 167 ~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~-~~~~~~~~~l~~~L~~~GV~ 224 (450)
T PRK06116 167 PKRVAVVGAGYIAVEFAGVLNGLGSETHLFVRGDAPLR-GFDPDIRETLVEEMEKKGIR 224 (450)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCcc-ccCHHHHHHHHHHHHHCCcE
Confidence 46899999999999999999999999999998765421 11111222344556666643
No 330
>KOG2311 consensus NAD/FAD-utilizing protein possibly involved in translation [Translation, ribosomal structure and biogenesis]
Probab=97.49 E-value=0.00014 Score=52.23 Aligned_cols=36 Identities=44% Similarity=0.593 Sum_probs=31.8
Q ss_pred CccccEEEECCCHHHHHHHHHHHHCCCceEEEcCCC
Q 047339 3 TVEKDVVIIGAGIAGLATALALKRLGIKPLVLEKSD 38 (115)
Q Consensus 3 ~~~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~ 38 (115)
+..+||+|||||-+|+.+|...++-|.+.+++-.+-
T Consensus 26 ~~~~dVvVIGgGHAG~EAAaAaaR~Ga~TlLlT~~l 61 (679)
T KOG2311|consen 26 TSTYDVVVIGGGHAGCEAAAAAARLGARTLLLTHNL 61 (679)
T ss_pred CCcccEEEECCCccchHHHHHHHhcCCceEEeeccc
Confidence 457899999999999999999999999998886543
No 331
>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]
Probab=97.48 E-value=6.7e-05 Score=52.84 Aligned_cols=73 Identities=25% Similarity=0.213 Sum_probs=50.9
Q ss_pred ccEEEECCCHHHHHHHHHHHHCC-------------CceEEEcCCCCCCCcceeeeeCccHHHHHHHcCChHHHhcccCC
Q 047339 6 KDVVIIGAGIAGLATALALKRLG-------------IKPLVLEKSDGLRGTGAAINFAPNAWLALDALGVSHKLASIYDP 72 (115)
Q Consensus 6 ~~v~IvG~G~~Gl~~A~~l~~~g-------------~~v~viE~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~i~~~~~~ 72 (115)
.+|+|||||++|..+|-.|+..- ++|.|+|+.+...+ ...-.++....+.|+++|++-.+...-..
T Consensus 156 lti~IvGgG~TGVElAgeL~~~~~~l~~~~~~~~~~~~V~LVea~p~ILp-~~~~~l~~~a~~~L~~~GV~v~l~~~Vt~ 234 (405)
T COG1252 156 LTIVIVGGGPTGVELAGELAERLHRLLKKFRVDPSELRVILVEAGPRILP-MFPPKLSKYAERALEKLGVEVLLGTPVTE 234 (405)
T ss_pred eEEEEECCChhHHHHHHHHHHHHHHHhhhhcCCccccEEEEEccCchhcc-CCCHHHHHHHHHHHHHCCCEEEcCCceEE
Confidence 47999999999999999887632 38999999888642 22333555678899999987555544333
Q ss_pred cceEEEE
Q 047339 73 VKRLFVT 79 (115)
Q Consensus 73 ~~~~~~~ 79 (115)
++...+.
T Consensus 235 v~~~~v~ 241 (405)
T COG1252 235 VTPDGVT 241 (405)
T ss_pred ECCCcEE
Confidence 4333333
No 332
>PRK06292 dihydrolipoamide dehydrogenase; Validated
Probab=97.47 E-value=0.0003 Score=50.25 Aligned_cols=37 Identities=41% Similarity=0.737 Sum_probs=33.5
Q ss_pred ccccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCCC
Q 047339 4 VEKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGL 40 (115)
Q Consensus 4 ~~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~~ 40 (115)
.+.+++|||+|+.|+.+|..|++.|.+|+++++.+..
T Consensus 168 ~~k~v~VIGgG~~g~E~A~~l~~~g~~Vtli~~~~~~ 204 (460)
T PRK06292 168 LPKSLAVIGGGVIGLELGQALSRLGVKVTVFERGDRI 204 (460)
T ss_pred cCCeEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCc
Confidence 3468999999999999999999999999999988765
No 333
>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B.
Probab=97.46 E-value=0.00013 Score=50.37 Aligned_cols=36 Identities=33% Similarity=0.436 Sum_probs=27.5
Q ss_pred cccEEEECCCHHHHHHHHHHHHCC-CceEEEcCCCCC
Q 047339 5 EKDVVIIGAGIAGLATALALKRLG-IKPLVLEKSDGL 40 (115)
Q Consensus 5 ~~~v~IvG~G~~Gl~~A~~l~~~g-~~v~viE~~~~~ 40 (115)
.+|+++||.||++|++|..|...+ .++..+|+.+..
T Consensus 2 ~~D~igIG~GP~nLslA~~l~~~~~~~~~f~e~~~~f 38 (341)
T PF13434_consen 2 IYDLIGIGFGPFNLSLAALLEEHGDLKALFLERRPSF 38 (341)
T ss_dssp EESEEEE--SHHHHHHHHHHHHHH---EEEEES-SS-
T ss_pred ceeEEEEeeCHHHHHHHHHhhhcCCCCEEEEecCCCC
Confidence 479999999999999999999987 899999987754
No 334
>PTZ00058 glutathione reductase; Provisional
Probab=97.45 E-value=0.00027 Score=51.94 Aligned_cols=58 Identities=14% Similarity=0.208 Sum_probs=41.6
Q ss_pred cccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCCCCCcceeeeeCccHHHHHHHcCCh
Q 047339 5 EKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGLRGTGAAINFAPNAWLALDALGVS 63 (115)
Q Consensus 5 ~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~~~~~~~~~~~~~~~~~~l~~~g~~ 63 (115)
..+++|||+|..|+.+|..+++.|.+|+++|+.+..... ..-.+.....+.|+..|+.
T Consensus 237 pk~VvIIGgG~iGlE~A~~l~~~G~~Vtli~~~~~il~~-~d~~i~~~l~~~L~~~GV~ 294 (561)
T PTZ00058 237 AKRIGIAGSGYIAVELINVVNRLGAESYIFARGNRLLRK-FDETIINELENDMKKNNIN 294 (561)
T ss_pred CCEEEEECCcHHHHHHHHHHHHcCCcEEEEEeccccccc-CCHHHHHHHHHHHHHCCCE
Confidence 468999999999999999999999999999987654321 1111223344556666654
No 335
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=97.44 E-value=0.00025 Score=47.78 Aligned_cols=33 Identities=30% Similarity=0.459 Sum_probs=30.6
Q ss_pred ccEEEECCCHHHHHHHHHHHHCCCceEEEcCCC
Q 047339 6 KDVVIIGAGIAGLATALALKRLGIKPLVLEKSD 38 (115)
Q Consensus 6 ~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~ 38 (115)
.+|.|||+|..|...|..++++|++|.++|.++
T Consensus 4 ~kIaViGaG~mG~~iA~~la~~G~~V~l~d~~~ 36 (287)
T PRK08293 4 KNVTVAGAGVLGSQIAFQTAFHGFDVTIYDISD 36 (287)
T ss_pred cEEEEECCCHHHHHHHHHHHhcCCeEEEEeCCH
Confidence 479999999999999999999999999999764
No 336
>TIGR01423 trypano_reduc trypanothione-disulfide reductase. Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.
Probab=97.43 E-value=0.00033 Score=50.60 Aligned_cols=59 Identities=17% Similarity=0.181 Sum_probs=41.0
Q ss_pred ccccEEEECCCHHHHHHHHHHHH---CCCceEEEcCCCCCCCcceeeeeCccHHHHHHHcCCh
Q 047339 4 VEKDVVIIGAGIAGLATALALKR---LGIKPLVLEKSDGLRGTGAAINFAPNAWLALDALGVS 63 (115)
Q Consensus 4 ~~~~v~IvG~G~~Gl~~A~~l~~---~g~~v~viE~~~~~~~~~~~~~~~~~~~~~l~~~g~~ 63 (115)
.+.+++|||||+.|+.+|..+.. .|.+|+|+|+.+.+.. ...-.+.....+.|++.|+.
T Consensus 186 ~~~~vvIIGgG~iG~E~A~~~~~l~~~G~~Vtli~~~~~il~-~~d~~~~~~l~~~L~~~GI~ 247 (486)
T TIGR01423 186 PPRRVLTVGGGFISVEFAGIFNAYKPRGGKVTLCYRNNMILR-GFDSTLRKELTKQLRANGIN 247 (486)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHhccCCCeEEEEecCCcccc-ccCHHHHHHHHHHHHHcCCE
Confidence 34689999999999999976654 4899999998876532 11222333455566666654
No 337
>PTZ00052 thioredoxin reductase; Provisional
Probab=97.43 E-value=0.00032 Score=50.82 Aligned_cols=57 Identities=26% Similarity=0.258 Sum_probs=40.0
Q ss_pred cccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCCCCCcceeeeeCccHHHHHHHcCCh
Q 047339 5 EKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGLRGTGAAINFAPNAWLALDALGVS 63 (115)
Q Consensus 5 ~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~~~~~~~~~~~~~~~~~~l~~~g~~ 63 (115)
+.+++|||+|+.|+.+|..|++.|.+|+++++.... ......+.....+.|+..|+.
T Consensus 182 ~~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~~~l--~~~d~~~~~~l~~~l~~~GV~ 238 (499)
T PTZ00052 182 PGKTLIVGASYIGLETAGFLNELGFDVTVAVRSIPL--RGFDRQCSEKVVEYMKEQGTL 238 (499)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCccc--ccCCHHHHHHHHHHHHHcCCE
Confidence 458999999999999999999999999999864221 111111223345566666654
No 338
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=97.43 E-value=0.00028 Score=47.63 Aligned_cols=32 Identities=25% Similarity=0.386 Sum_probs=29.6
Q ss_pred cEEEECCCHHHHHHHHHHHHCCCceEEEcCCC
Q 047339 7 DVVIIGAGIAGLATALALKRLGIKPLVLEKSD 38 (115)
Q Consensus 7 ~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~ 38 (115)
+|+|||+|..|..+|..|++.|++|+++++.+
T Consensus 2 ~I~IiG~G~~G~~~a~~L~~~g~~V~~~~r~~ 33 (304)
T PRK06522 2 KIAILGAGAIGGLFGAALAQAGHDVTLVARRG 33 (304)
T ss_pred EEEEECCCHHHHHHHHHHHhCCCeEEEEECCh
Confidence 69999999999999999999999999998743
No 339
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=97.42 E-value=0.00029 Score=47.59 Aligned_cols=30 Identities=23% Similarity=0.309 Sum_probs=28.8
Q ss_pred cEEEECCCHHHHHHHHHHHHCCCceEEEcC
Q 047339 7 DVVIIGAGIAGLATALALKRLGIKPLVLEK 36 (115)
Q Consensus 7 ~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~ 36 (115)
+|+|+|+|..|+.+|..|++.|++|+++++
T Consensus 2 kI~IiG~G~iG~~~a~~L~~~g~~V~~~~r 31 (305)
T PRK12921 2 RIAVVGAGAVGGTFGGRLLEAGRDVTFLVR 31 (305)
T ss_pred eEEEECCCHHHHHHHHHHHHCCCceEEEec
Confidence 699999999999999999999999999987
No 340
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=97.41 E-value=0.00035 Score=47.96 Aligned_cols=34 Identities=21% Similarity=0.350 Sum_probs=31.1
Q ss_pred ccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCC
Q 047339 6 KDVVIIGAGIAGLATALALKRLGIKPLVLEKSDG 39 (115)
Q Consensus 6 ~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~ 39 (115)
.+|.|||+|..|...|..++..|++|+++|..+.
T Consensus 8 ~~VaVIGaG~MG~giA~~~a~aG~~V~l~D~~~~ 41 (321)
T PRK07066 8 KTFAAIGSGVIGSGWVARALAHGLDVVAWDPAPG 41 (321)
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHH
Confidence 5699999999999999999999999999997653
No 341
>COG4529 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.41 E-value=0.00033 Score=50.05 Aligned_cols=35 Identities=26% Similarity=0.294 Sum_probs=29.7
Q ss_pred ccEEEECCCHHHHHHHHHHHHCC---CceEEEcCCCCC
Q 047339 6 KDVVIIGAGIAGLATALALKRLG---IKPLVLEKSDGL 40 (115)
Q Consensus 6 ~~v~IvG~G~~Gl~~A~~l~~~g---~~v~viE~~~~~ 40 (115)
++|+|||+|++|+.+|..|.+.- ..+.|+|..+..
T Consensus 2 ~~VAIIGgG~sGi~~A~~Ll~~~~~~~~Isi~e~~~~~ 39 (474)
T COG4529 2 FKVAIIGGGFSGIYMAAHLLKSPRPSGLISIFEPRPNF 39 (474)
T ss_pred ceEEEECCchHHHHHHHHHHhCCCCCCceEEecccccc
Confidence 68999999999999999998842 239999987765
No 342
>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein. This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.
Probab=97.40 E-value=0.00038 Score=50.28 Aligned_cols=57 Identities=23% Similarity=0.270 Sum_probs=39.7
Q ss_pred cccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCCCCCcceeeeeCccHHHHHHHcCCh
Q 047339 5 EKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGLRGTGAAINFAPNAWLALDALGVS 63 (115)
Q Consensus 5 ~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~~~~~~~~~~~~~~~~~~l~~~g~~ 63 (115)
+.+++|||||+.|+.+|..|++.|.+|+|+++. ... ....-.+.....+.|+..|+.
T Consensus 180 ~~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~-~~l-~~~d~~~~~~l~~~L~~~gV~ 236 (484)
T TIGR01438 180 PGKTLVVGASYVALECAGFLAGIGLDVTVMVRS-ILL-RGFDQDCANKVGEHMEEHGVK 236 (484)
T ss_pred CCCEEEECCCHHHHHHHHHHHHhCCcEEEEEec-ccc-cccCHHHHHHHHHHHHHcCCE
Confidence 457999999999999999999999999999874 221 111111223344566666654
No 343
>PRK13748 putative mercuric reductase; Provisional
Probab=97.40 E-value=0.00039 Score=50.86 Aligned_cols=34 Identities=32% Similarity=0.533 Sum_probs=31.2
Q ss_pred cccEEEECCCHHHHHHHHHHHHCCCceEEEcCCC
Q 047339 5 EKDVVIIGAGIAGLATALALKRLGIKPLVLEKSD 38 (115)
Q Consensus 5 ~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~ 38 (115)
+.+++|||+|+.|+-+|..|++.|.+|+|+++..
T Consensus 270 ~~~vvViGgG~ig~E~A~~l~~~g~~Vtli~~~~ 303 (561)
T PRK13748 270 PERLAVIGSSVVALELAQAFARLGSKVTILARST 303 (561)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCEEEEEecCc
Confidence 4689999999999999999999999999999753
No 344
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=97.40 E-value=0.00034 Score=49.60 Aligned_cols=56 Identities=27% Similarity=0.313 Sum_probs=40.7
Q ss_pred cEEEECCCHHHHHHHHHHHH--------------CCCceEEEcCCCCCCCcceeeeeCccHHHHHHHcCCh
Q 047339 7 DVVIIGAGIAGLATALALKR--------------LGIKPLVLEKSDGLRGTGAAINFAPNAWLALDALGVS 63 (115)
Q Consensus 7 ~v~IvG~G~~Gl~~A~~l~~--------------~g~~v~viE~~~~~~~~~~~~~~~~~~~~~l~~~g~~ 63 (115)
+++|||||++|+.+|..|+. .+.+|+++++.+.+.. ...-.+.....+.|++.|+.
T Consensus 175 ~vvVvGgG~~GvE~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~~~ll~-~~~~~~~~~~~~~L~~~gV~ 244 (424)
T PTZ00318 175 HFVVVGGGPTGVEFAAELADFFRDDVRNLNPELVEECKVTVLEAGSEVLG-SFDQALRKYGQRRLRRLGVD 244 (424)
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHHHHhhhhcccccCEEEEEcCCCcccc-cCCHHHHHHHHHHHHHCCCE
Confidence 79999999999999998875 4789999998766532 11222334456677777765
No 345
>TIGR03452 mycothione_red mycothione reductase. Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.
Probab=97.38 E-value=0.00041 Score=49.62 Aligned_cols=36 Identities=25% Similarity=0.446 Sum_probs=32.9
Q ss_pred cccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCCC
Q 047339 5 EKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGL 40 (115)
Q Consensus 5 ~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~~ 40 (115)
+.+++|||+|+.|+.+|..|++.|.+|+++++.+.+
T Consensus 169 ~k~vvVIGgG~ig~E~A~~l~~~G~~Vtli~~~~~l 204 (452)
T TIGR03452 169 PESLVIVGGGYIAAEFAHVFSALGTRVTIVNRSTKL 204 (452)
T ss_pred CCcEEEECCCHHHHHHHHHHHhCCCcEEEEEccCcc
Confidence 468999999999999999999999999999987654
No 346
>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=97.38 E-value=0.00037 Score=47.04 Aligned_cols=34 Identities=32% Similarity=0.326 Sum_probs=31.2
Q ss_pred ccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCC
Q 047339 6 KDVVIIGAGIAGLATALALKRLGIKPLVLEKSDG 39 (115)
Q Consensus 6 ~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~ 39 (115)
.+|.|||+|..|...|..|+++|++|.++|+++.
T Consensus 5 ~kI~vIGaG~mG~~iA~~la~~G~~V~l~d~~~~ 38 (292)
T PRK07530 5 KKVGVIGAGQMGNGIAHVCALAGYDVLLNDVSAD 38 (292)
T ss_pred CEEEEECCcHHHHHHHHHHHHCCCeEEEEeCCHH
Confidence 5799999999999999999999999999997643
No 347
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=97.37 E-value=0.00032 Score=47.29 Aligned_cols=34 Identities=21% Similarity=0.469 Sum_probs=31.0
Q ss_pred ccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCC
Q 047339 6 KDVVIIGAGIAGLATALALKRLGIKPLVLEKSDG 39 (115)
Q Consensus 6 ~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~ 39 (115)
.+|.|||+|..|...|..|+++|++|+++|+++.
T Consensus 2 ~~V~VIG~G~mG~~iA~~la~~G~~V~~~d~~~~ 35 (288)
T PRK09260 2 EKLVVVGAGVMGRGIAYVFAVSGFQTTLVDIKQE 35 (288)
T ss_pred cEEEEECccHHHHHHHHHHHhCCCcEEEEeCCHH
Confidence 4699999999999999999999999999997654
No 348
>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=97.37 E-value=0.00042 Score=47.15 Aligned_cols=37 Identities=27% Similarity=0.566 Sum_probs=32.2
Q ss_pred CCCccccEEEECCCHHHHHHHHHHHHCCCceEEEcCCC
Q 047339 1 METVEKDVVIIGAGIAGLATALALKRLGIKPLVLEKSD 38 (115)
Q Consensus 1 m~~~~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~ 38 (115)
|+.+ .+|.|||+|..|...|..|++.|++|++++.++
T Consensus 1 ~~~~-~~I~vIGaG~mG~~iA~~l~~~g~~V~~~d~~~ 37 (311)
T PRK06130 1 MNPI-QNLAIIGAGTMGSGIAALFARKGLQVVLIDVME 37 (311)
T ss_pred CCCc-cEEEEECCCHHHHHHHHHHHhCCCeEEEEECCH
Confidence 5444 569999999999999999999999999999754
No 349
>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=97.34 E-value=0.00043 Score=47.47 Aligned_cols=37 Identities=24% Similarity=0.303 Sum_probs=32.4
Q ss_pred CCCccccEEEECCCHHHHHHHHHHHHCCCceEEEcCCC
Q 047339 1 METVEKDVVIIGAGIAGLATALALKRLGIKPLVLEKSD 38 (115)
Q Consensus 1 m~~~~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~ 38 (115)
|+.+ ++|.|||+|..|...|..|++.|++|+++++++
T Consensus 1 ~~~~-m~I~iIG~G~mG~~ia~~L~~~G~~V~~~~r~~ 37 (328)
T PRK14618 1 MHHG-MRVAVLGAGAWGTALAVLAASKGVPVRLWARRP 37 (328)
T ss_pred CCCC-CeEEEECcCHHHHHHHHHHHHCCCeEEEEeCCH
Confidence 4443 479999999999999999999999999999864
No 350
>PRK14694 putative mercuric reductase; Provisional
Probab=97.33 E-value=0.00053 Score=49.23 Aligned_cols=57 Identities=26% Similarity=0.336 Sum_probs=39.4
Q ss_pred cccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCCCCCcceeeeeCccHHHHHHHcCCh
Q 047339 5 EKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGLRGTGAAINFAPNAWLALDALGVS 63 (115)
Q Consensus 5 ~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~~~~~~~~~~~~~~~~~~l~~~g~~ 63 (115)
+.+++|||+|+.|+.+|..|++.|.+|+++++...... ..-.+.....+.|++.|+.
T Consensus 178 ~~~vvViG~G~~G~E~A~~l~~~g~~Vtlv~~~~~l~~--~~~~~~~~l~~~l~~~GI~ 234 (468)
T PRK14694 178 PERLLVIGASVVALELAQAFARLGSRVTVLARSRVLSQ--EDPAVGEAIEAAFRREGIE 234 (468)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEECCCCCCC--CCHHHHHHHHHHHHhCCCE
Confidence 46899999999999999999999999999986432211 1111223344556666653
No 351
>PLN02546 glutathione reductase
Probab=97.32 E-value=0.00051 Score=50.50 Aligned_cols=58 Identities=16% Similarity=0.161 Sum_probs=40.6
Q ss_pred cccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCCCCCcceeeeeCccHHHHHHHcCCh
Q 047339 5 EKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGLRGTGAAINFAPNAWLALDALGVS 63 (115)
Q Consensus 5 ~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~~~~~~~~~~~~~~~~~~l~~~g~~ 63 (115)
..+++|||+|..|+-+|..|+..|.+|+|+++.+.... ...-.+.....+.|+..|+.
T Consensus 252 ~k~V~VIGgG~iGvE~A~~L~~~g~~Vtlv~~~~~il~-~~d~~~~~~l~~~L~~~GV~ 309 (558)
T PLN02546 252 PEKIAIVGGGYIALEFAGIFNGLKSDVHVFIRQKKVLR-GFDEEVRDFVAEQMSLRGIE 309 (558)
T ss_pred CCeEEEECCCHHHHHHHHHHHhcCCeEEEEEecccccc-ccCHHHHHHHHHHHHHCCcE
Confidence 46899999999999999999999999999998765422 11111112233556666654
No 352
>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=97.32 E-value=0.00056 Score=46.58 Aligned_cols=37 Identities=30% Similarity=0.329 Sum_probs=33.1
Q ss_pred CccccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCC
Q 047339 3 TVEKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDG 39 (115)
Q Consensus 3 ~~~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~ 39 (115)
+..++|.|||+|..|..+|..|+++|++|.+++++..
T Consensus 2 ~~~m~I~iiG~G~~G~~lA~~l~~~G~~V~~~~r~~~ 38 (308)
T PRK14619 2 TQPKTIAILGAGAWGSTLAGLASANGHRVRVWSRRSG 38 (308)
T ss_pred CCCCEEEEECccHHHHHHHHHHHHCCCEEEEEeCCCC
Confidence 4456899999999999999999999999999998754
No 353
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=97.32 E-value=0.0004 Score=49.28 Aligned_cols=34 Identities=24% Similarity=0.354 Sum_probs=31.3
Q ss_pred ccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCC
Q 047339 6 KDVVIIGAGIAGLATALALKRLGIKPLVLEKSDG 39 (115)
Q Consensus 6 ~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~ 39 (115)
.+|.|||.|..|+.+|..|+++|++|..+|.++.
T Consensus 4 ~kI~VIGlG~~G~~~A~~La~~G~~V~~~D~~~~ 37 (415)
T PRK11064 4 ETISVIGLGYIGLPTAAAFASRQKQVIGVDINQH 37 (415)
T ss_pred cEEEEECcchhhHHHHHHHHhCCCEEEEEeCCHH
Confidence 5799999999999999999999999999997654
No 354
>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=97.31 E-value=0.0004 Score=46.87 Aligned_cols=34 Identities=24% Similarity=0.463 Sum_probs=31.1
Q ss_pred ccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCC
Q 047339 6 KDVVIIGAGIAGLATALALKRLGIKPLVLEKSDG 39 (115)
Q Consensus 6 ~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~ 39 (115)
.+|.|||+|..|...|..+++.|++|+++|+++.
T Consensus 4 ~~I~ViGaG~mG~~iA~~la~~G~~V~l~d~~~~ 37 (291)
T PRK06035 4 KVIGVVGSGVMGQGIAQVFARTGYDVTIVDVSEE 37 (291)
T ss_pred cEEEEECccHHHHHHHHHHHhcCCeEEEEeCCHH
Confidence 4699999999999999999999999999997654
No 355
>PLN02545 3-hydroxybutyryl-CoA dehydrogenase
Probab=97.27 E-value=0.00058 Score=46.18 Aligned_cols=38 Identities=26% Similarity=0.413 Sum_probs=32.8
Q ss_pred CCCccccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCC
Q 047339 1 METVEKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDG 39 (115)
Q Consensus 1 m~~~~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~ 39 (115)
|+.+ .+|.|||+|..|...|..++..|++|.++|+++.
T Consensus 1 ~~~~-~~V~vIG~G~mG~~iA~~l~~~G~~V~~~d~~~~ 38 (295)
T PLN02545 1 MAEI-KKVGVVGAGQMGSGIAQLAAAAGMDVWLLDSDPA 38 (295)
T ss_pred CCCc-CEEEEECCCHHHHHHHHHHHhcCCeEEEEeCCHH
Confidence 4444 4699999999999999999999999999997653
No 356
>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=97.27 E-value=0.00046 Score=47.28 Aligned_cols=32 Identities=31% Similarity=0.417 Sum_probs=29.9
Q ss_pred cEEEECCCHHHHHHHHHHHHCCCceEEEcCCC
Q 047339 7 DVVIIGAGIAGLATALALKRLGIKPLVLEKSD 38 (115)
Q Consensus 7 ~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~ 38 (115)
+|.|||+|..|..+|..|++.|++|.++.+++
T Consensus 2 kI~IiGaGa~G~ala~~L~~~g~~V~l~~r~~ 33 (326)
T PRK14620 2 KISILGAGSFGTAIAIALSSKKISVNLWGRNH 33 (326)
T ss_pred EEEEECcCHHHHHHHHHHHHCCCeEEEEecCH
Confidence 59999999999999999999999999999854
No 357
>PRK14727 putative mercuric reductase; Provisional
Probab=97.26 E-value=0.00067 Score=48.86 Aligned_cols=33 Identities=27% Similarity=0.470 Sum_probs=30.6
Q ss_pred cccEEEECCCHHHHHHHHHHHHCCCceEEEcCC
Q 047339 5 EKDVVIIGAGIAGLATALALKRLGIKPLVLEKS 37 (115)
Q Consensus 5 ~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~ 37 (115)
+.+++|||+|+.|+.+|..|++.|.+|+++++.
T Consensus 188 ~k~vvVIGgG~iG~E~A~~l~~~G~~Vtlv~~~ 220 (479)
T PRK14727 188 PASLTVIGSSVVAAEIAQAYARLGSRVTILARS 220 (479)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCEEEEEEcC
Confidence 468999999999999999999999999999874
No 358
>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit.
Probab=97.23 E-value=0.0005 Score=52.39 Aligned_cols=33 Identities=18% Similarity=0.319 Sum_probs=28.7
Q ss_pred EEEECCCHHHHHHHHHHHHC---CCceEEEcCCCCC
Q 047339 8 VVIIGAGIAGLATALALKRL---GIKPLVLEKSDGL 40 (115)
Q Consensus 8 v~IvG~G~~Gl~~A~~l~~~---g~~v~viE~~~~~ 40 (115)
|+|||+|++|+.+|..|.+. +++|+|+|+.+.+
T Consensus 1 iVIIG~G~AG~~aa~~l~~~~~~~~~Itvi~~e~~~ 36 (785)
T TIGR02374 1 LVLVGNGMAGHRCIEEVLKLNRHMFEITIFGEEPHP 36 (785)
T ss_pred CEEECCCHHHHHHHHHHHhcCCCCCeEEEEeCCCCC
Confidence 68999999999999988774 4799999988775
No 359
>PTZ00153 lipoamide dehydrogenase; Provisional
Probab=97.23 E-value=0.00074 Score=50.54 Aligned_cols=37 Identities=30% Similarity=0.344 Sum_probs=33.5
Q ss_pred cccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCCCC
Q 047339 5 EKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGLR 41 (115)
Q Consensus 5 ~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~~~ 41 (115)
+.+++|||||..|+.+|..+++.|.+|+++|+.+.+.
T Consensus 312 pk~VvIVGgG~iGvE~A~~l~~~G~eVTLIe~~~~ll 348 (659)
T PTZ00153 312 QNYMGIVGMGIIGLEFMDIYTALGSEVVSFEYSPQLL 348 (659)
T ss_pred CCceEEECCCHHHHHHHHHHHhCCCeEEEEeccCccc
Confidence 4689999999999999999999999999999887653
No 360
>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=97.22 E-value=0.00056 Score=47.93 Aligned_cols=33 Identities=27% Similarity=0.571 Sum_probs=30.9
Q ss_pred cEEEECCCHHHHHHHHHHHHCCCceEEEcCCCC
Q 047339 7 DVVIIGAGIAGLATALALKRLGIKPLVLEKSDG 39 (115)
Q Consensus 7 ~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~ 39 (115)
+|.|+|.|.+||+.|..|++.|++|+.+|..+.
T Consensus 2 kI~viGtGYVGLv~g~~lA~~GHeVv~vDid~~ 34 (414)
T COG1004 2 KITVIGTGYVGLVTGACLAELGHEVVCVDIDES 34 (414)
T ss_pred ceEEECCchHHHHHHHHHHHcCCeEEEEeCCHH
Confidence 799999999999999999999999999997654
No 361
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=97.22 E-value=0.001 Score=47.55 Aligned_cols=34 Identities=32% Similarity=0.441 Sum_probs=31.3
Q ss_pred ccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCC
Q 047339 6 KDVVIIGAGIAGLATALALKRLGIKPLVLEKSDG 39 (115)
Q Consensus 6 ~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~ 39 (115)
.+|+|||+|..|+-+|..|.+.|.+|+++++...
T Consensus 273 k~VvVIGgG~~a~d~A~~l~~~G~~Vtlv~~~~~ 306 (449)
T TIGR01316 273 KSVVVIGGGNTAVDSARTALRLGAEVHCLYRRTR 306 (449)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCEEEEEeecCc
Confidence 5899999999999999999999999999987653
No 362
>KOG0405 consensus Pyridine nucleotide-disulphide oxidoreductase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=97.21 E-value=0.00081 Score=46.70 Aligned_cols=43 Identities=33% Similarity=0.397 Sum_probs=36.8
Q ss_pred ccccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCCCCCccee
Q 047339 4 VEKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGLRGTGAA 46 (115)
Q Consensus 4 ~~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~~~~~~~~ 46 (115)
..+|.+|||||..|+..|..++..|.++.|+|..-..++++-+
T Consensus 19 k~fDylvIGgGSGGvasARrAa~~GAkv~l~E~~f~lGGTCVn 61 (478)
T KOG0405|consen 19 KDFDYLVIGGGSGGVASARRAASHGAKVALCELPFGLGGTCVN 61 (478)
T ss_pred cccceEEEcCCcchhHHhHHHHhcCceEEEEecCCCcCceEEe
Confidence 3689999999999999999999999999999987555554443
No 363
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A ....
Probab=97.21 E-value=0.0006 Score=43.21 Aligned_cols=34 Identities=29% Similarity=0.468 Sum_probs=28.8
Q ss_pred cccEEEECCCHHHHHHHHHHHHCCCceEEEcCCC
Q 047339 5 EKDVVIIGAGIAGLATALALKRLGIKPLVLEKSD 38 (115)
Q Consensus 5 ~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~ 38 (115)
..+|+|||+|.++..+|..|++.|.+|+++-|.+
T Consensus 167 ~k~V~VVG~G~SA~d~a~~l~~~g~~V~~~~R~~ 200 (203)
T PF13738_consen 167 GKRVVVVGGGNSAVDIAYALAKAGKSVTLVTRSP 200 (203)
T ss_dssp TSEEEEE--SHHHHHHHHHHTTTCSEEEEEESS-
T ss_pred CCcEEEEcChHHHHHHHHHHHhhCCEEEEEecCC
Confidence 4689999999999999999999999999998765
No 364
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=97.20 E-value=0.00064 Score=45.68 Aligned_cols=34 Identities=26% Similarity=0.396 Sum_probs=30.8
Q ss_pred ccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCC
Q 047339 6 KDVVIIGAGIAGLATALALKRLGIKPLVLEKSDG 39 (115)
Q Consensus 6 ~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~ 39 (115)
.+|.|||+|..|...|..++++|++|+++|.++.
T Consensus 4 ~kI~VIG~G~mG~~ia~~la~~g~~V~~~d~~~~ 37 (282)
T PRK05808 4 QKIGVIGAGTMGNGIAQVCAVAGYDVVMVDISDA 37 (282)
T ss_pred cEEEEEccCHHHHHHHHHHHHCCCceEEEeCCHH
Confidence 3699999999999999999999999999996543
No 365
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=97.19 E-value=0.001 Score=42.84 Aligned_cols=34 Identities=24% Similarity=0.352 Sum_probs=30.7
Q ss_pred cccEEEECCCHHHHHHHHHHHHCCCceEEEcCCC
Q 047339 5 EKDVVIIGAGIAGLATALALKRLGIKPLVLEKSD 38 (115)
Q Consensus 5 ~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~ 38 (115)
..+++|||||.+|+.-+..|.+.|.+|+|++...
T Consensus 9 gk~vlVvGgG~va~rk~~~Ll~~ga~VtVvsp~~ 42 (205)
T TIGR01470 9 GRAVLVVGGGDVALRKARLLLKAGAQLRVIAEEL 42 (205)
T ss_pred CCeEEEECcCHHHHHHHHHHHHCCCEEEEEcCCC
Confidence 4689999999999999999999999999997643
No 366
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=97.18 E-value=0.00098 Score=41.21 Aligned_cols=31 Identities=39% Similarity=0.410 Sum_probs=28.9
Q ss_pred cccEEEECCCHHHHHHHHHHHHCCCceEEEc
Q 047339 5 EKDVVIIGAGIAGLATALALKRLGIKPLVLE 35 (115)
Q Consensus 5 ~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE 35 (115)
..+|+|||||..|+.-+..|.+.|++|+|+.
T Consensus 13 ~~~vlVvGGG~va~rka~~Ll~~ga~V~VIs 43 (157)
T PRK06719 13 NKVVVIIGGGKIAYRKASGLKDTGAFVTVVS 43 (157)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCEEEEEc
Confidence 4689999999999999999999999999995
No 367
>PRK00066 ldh L-lactate dehydrogenase; Reviewed
Probab=97.12 E-value=0.0014 Score=44.95 Aligned_cols=39 Identities=28% Similarity=0.502 Sum_probs=33.0
Q ss_pred CCCccccEEEECCCHHHHHHHHHHHHCCC--ceEEEcCCCC
Q 047339 1 METVEKDVVIIGAGIAGLATALALKRLGI--KPLVLEKSDG 39 (115)
Q Consensus 1 m~~~~~~v~IvG~G~~Gl~~A~~l~~~g~--~v~viE~~~~ 39 (115)
|.....+|+|||+|-+|.++|+.|...++ .+.|+|.+..
T Consensus 2 ~~~~~~ki~iiGaG~vG~~~a~~l~~~~~~~el~L~D~~~~ 42 (315)
T PRK00066 2 MKKQHNKVVLVGDGAVGSSYAYALVNQGIADELVIIDINKE 42 (315)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCCc
Confidence 34456799999999999999999999997 7999997554
No 368
>KOG3923 consensus D-aspartate oxidase [Amino acid transport and metabolism]
Probab=97.11 E-value=0.00077 Score=45.65 Aligned_cols=36 Identities=33% Similarity=0.436 Sum_probs=29.6
Q ss_pred cccEEEECCCHHHHHHHHHHHHCC-------CceEEEcCCCCC
Q 047339 5 EKDVVIIGAGIAGLATALALKRLG-------IKPLVLEKSDGL 40 (115)
Q Consensus 5 ~~~v~IvG~G~~Gl~~A~~l~~~g-------~~v~viE~~~~~ 40 (115)
.++|+|||+|..||++|+.+.+.. ++|+|++-...+
T Consensus 3 ~~~iaViGaGVIGlsTA~~i~~~~~~~~ip~~~vtv~~Drf~e 45 (342)
T KOG3923|consen 3 TPRIAVIGAGVIGLSTALCILELYHSVLIPVAKVTVISDRFTE 45 (342)
T ss_pred CccEEEEcCCeechhHHHHHHHhhhhccCCcceEEEecCCCcc
Confidence 469999999999999998888843 679999866554
No 369
>PF06100 Strep_67kDa_ant: Streptococcal 67 kDa myosin-cross-reactive antigen like family ; InterPro: IPR010354 Members of this family are thought to have structural features in common with the beta chain of the class II antigens, as well as myosin, and may play an important role in the pathogenesis [].
Probab=97.11 E-value=0.00095 Score=48.07 Aligned_cols=38 Identities=42% Similarity=0.510 Sum_probs=32.0
Q ss_pred cccEEEECCCHHHHHHHHHHHHC----CCceEEEcCCCCCCC
Q 047339 5 EKDVVIIGAGIAGLATALALKRL----GIKPLVLEKSDGLRG 42 (115)
Q Consensus 5 ~~~v~IvG~G~~Gl~~A~~l~~~----g~~v~viE~~~~~~~ 42 (115)
+.+.=|||+|+++|++|.+|-+. |-+|+|+|+.+.+++
T Consensus 2 ~~~AyivGsGiAsLAAAvfLIrDa~~pg~nIhIlE~~~~~GG 43 (500)
T PF06100_consen 2 NKKAYIVGSGIASLAAAVFLIRDAKMPGENIHILEELDVPGG 43 (500)
T ss_pred CceEEEECCCHHHHHhhhhhhccCCCCccceEEEeCCCCCCC
Confidence 35677999999999999999995 569999998876543
No 370
>KOG2844 consensus Dimethylglycine dehydrogenase precursor [Amino acid transport and metabolism]
Probab=97.10 E-value=0.00079 Score=50.14 Aligned_cols=35 Identities=43% Similarity=0.594 Sum_probs=29.0
Q ss_pred cccEEEECCCHHHHHHHHHHHHCCCceE-EEcCCCC
Q 047339 5 EKDVVIIGAGIAGLATALALKRLGIKPL-VLEKSDG 39 (115)
Q Consensus 5 ~~~v~IvG~G~~Gl~~A~~l~~~g~~v~-viE~~~~ 39 (115)
..|++|||||.+|+.+|+.|+++|.+.. ++|+...
T Consensus 39 ~A~vvViggG~~g~~~~yhlak~g~k~avlle~~~l 74 (856)
T KOG2844|consen 39 TADVVVIGGGSLGCSTAYHLAKRGMKGAVLLERSRL 74 (856)
T ss_pred cccEEEEcCCchhHHHHHHHHHccccceEEEeeeee
Confidence 4799999999999999999999999854 4455443
No 371
>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=97.10 E-value=0.0011 Score=45.28 Aligned_cols=33 Identities=33% Similarity=0.496 Sum_probs=29.7
Q ss_pred cEEEECCCHHHHHHHHHHHHCC--CceEEEcCCCC
Q 047339 7 DVVIIGAGIAGLATALALKRLG--IKPLVLEKSDG 39 (115)
Q Consensus 7 ~v~IvG~G~~Gl~~A~~l~~~g--~~v~viE~~~~ 39 (115)
+|.|||+|.+|+++|+.|+..| ..+.++|++..
T Consensus 2 kI~IIGaG~VG~~~a~~l~~~g~~~ev~l~D~~~~ 36 (308)
T cd05292 2 KVAIVGAGFVGSTTAYALLLRGLASEIVLVDINKA 36 (308)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCCCEEEEEECCch
Confidence 6999999999999999999999 47999998654
No 372
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=97.09 E-value=0.0013 Score=42.25 Aligned_cols=33 Identities=30% Similarity=0.473 Sum_probs=30.2
Q ss_pred cccEEEECCCHHHHHHHHHHHHCCCceEEEcCC
Q 047339 5 EKDVVIIGAGIAGLATALALKRLGIKPLVLEKS 37 (115)
Q Consensus 5 ~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~ 37 (115)
..+++|||||-.|...+..|.+.|.+|+|+++.
T Consensus 10 ~k~vLVIGgG~va~~ka~~Ll~~ga~V~VIs~~ 42 (202)
T PRK06718 10 NKRVVIVGGGKVAGRRAITLLKYGAHIVVISPE 42 (202)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCeEEEEcCC
Confidence 468999999999999999999999999999754
No 373
>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent. The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable.
Probab=97.07 E-value=0.0014 Score=44.66 Aligned_cols=34 Identities=32% Similarity=0.598 Sum_probs=30.0
Q ss_pred ccEEEECCCHHHHHHHHHHHHCCC-ceEEEcCCCC
Q 047339 6 KDVVIIGAGIAGLATALALKRLGI-KPLVLEKSDG 39 (115)
Q Consensus 6 ~~v~IvG~G~~Gl~~A~~l~~~g~-~v~viE~~~~ 39 (115)
++|.|||+|..|+..|..++..|+ +|.++|..+.
T Consensus 2 ~KV~VIGaG~vG~~iA~~la~~g~~~VvlvDi~~~ 36 (305)
T TIGR01763 2 KKISVIGAGFVGATTAFRLAEKELADLVLLDVVEG 36 (305)
T ss_pred CEEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCCC
Confidence 479999999999999999999886 8999997544
No 374
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=97.07 E-value=0.001 Score=48.37 Aligned_cols=35 Identities=40% Similarity=0.565 Sum_probs=31.8
Q ss_pred ccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCCC
Q 047339 6 KDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGL 40 (115)
Q Consensus 6 ~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~~ 40 (115)
.+++|||||+.|+.+|..|+..+.+|+++++.+..
T Consensus 353 k~VvViGgG~~g~E~A~~L~~~g~~Vtli~~~~~l 387 (515)
T TIGR03140 353 KDVAVIGGGNSGIEAAIDLAGIVRHVTVLEFADEL 387 (515)
T ss_pred CEEEEECCcHHHHHHHHHHHhcCcEEEEEEeCCcC
Confidence 58999999999999999999999999999976554
No 375
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=97.05 E-value=0.0017 Score=47.70 Aligned_cols=59 Identities=19% Similarity=0.155 Sum_probs=41.8
Q ss_pred cccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCCCCC----cc-eeeeeCccHHHHHHHcCCh
Q 047339 5 EKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGLRG----TG-AAINFAPNAWLALDALGVS 63 (115)
Q Consensus 5 ~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~~~~----~~-~~~~~~~~~~~~l~~~g~~ 63 (115)
+-+++|+|+|..|..+|..|.++|++++++|+++.... .+ ..+.-.+...+.|++.|+.
T Consensus 417 ~~hiiI~G~G~~G~~la~~L~~~g~~vvvId~d~~~~~~~~~~g~~~i~GD~~~~~~L~~a~i~ 480 (558)
T PRK10669 417 CNHALLVGYGRVGSLLGEKLLAAGIPLVVIETSRTRVDELRERGIRAVLGNAANEEIMQLAHLD 480 (558)
T ss_pred CCCEEEECCChHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHCCCeEEEcCCCCHHHHHhcCcc
Confidence 46899999999999999999999999999998765311 11 1222233344566666654
No 376
>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated
Probab=97.04 E-value=0.0012 Score=45.06 Aligned_cols=33 Identities=27% Similarity=0.413 Sum_probs=30.5
Q ss_pred ccEEEECCCHHHHHHHHHHHHCCCceEEEcCCC
Q 047339 6 KDVVIIGAGIAGLATALALKRLGIKPLVLEKSD 38 (115)
Q Consensus 6 ~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~ 38 (115)
++|.|||+|..|...|..|++.|++|.++++++
T Consensus 2 mkI~iiG~G~mG~~~a~~L~~~g~~V~~~~r~~ 34 (325)
T PRK00094 2 MKIAVLGAGSWGTALAIVLARNGHDVTLWARDP 34 (325)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCEEEEEECCH
Confidence 379999999999999999999999999999864
No 377
>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase. All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.
Probab=97.04 E-value=0.00093 Score=47.29 Aligned_cols=33 Identities=27% Similarity=0.418 Sum_probs=30.6
Q ss_pred cEEEECCCHHHHHHHHHHHHCCCceEEEcCCCC
Q 047339 7 DVVIIGAGIAGLATALALKRLGIKPLVLEKSDG 39 (115)
Q Consensus 7 ~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~ 39 (115)
+|.|||.|..|+.+|..|++.|++|.++++++.
T Consensus 2 kI~vIGlG~~G~~lA~~La~~G~~V~~~d~~~~ 34 (411)
T TIGR03026 2 KIAVIGLGYVGLPLAALLADLGHEVTGVDIDQE 34 (411)
T ss_pred EEEEECCCchhHHHHHHHHhcCCeEEEEECCHH
Confidence 699999999999999999999999999997654
No 378
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=97.04 E-value=0.001 Score=48.86 Aligned_cols=34 Identities=32% Similarity=0.455 Sum_probs=31.6
Q ss_pred ccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCC
Q 047339 6 KDVVIIGAGIAGLATALALKRLGIKPLVLEKSDG 39 (115)
Q Consensus 6 ~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~ 39 (115)
.+++|||||+.|+.+|..|++.|.+|+++++.+.
T Consensus 144 ~~VvVIGgG~~g~E~A~~L~~~g~~Vtli~~~~~ 177 (555)
T TIGR03143 144 MDVFVIGGGFAAAEEAVFLTRYASKVTVIVREPD 177 (555)
T ss_pred CEEEEECCCHHHHHHHHHHHccCCEEEEEEeCCc
Confidence 5799999999999999999999999999998764
No 379
>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1.4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....
Probab=97.03 E-value=0.0016 Score=40.56 Aligned_cols=35 Identities=31% Similarity=0.405 Sum_probs=30.3
Q ss_pred cccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCC
Q 047339 5 EKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDG 39 (115)
Q Consensus 5 ~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~ 39 (115)
+.+|+|+|+|.+|.-++..|...|++|+++|....
T Consensus 20 p~~vvv~G~G~vg~gA~~~~~~lGa~v~~~d~~~~ 54 (168)
T PF01262_consen 20 PAKVVVTGAGRVGQGAAEIAKGLGAEVVVPDERPE 54 (168)
T ss_dssp T-EEEEESTSHHHHHHHHHHHHTT-EEEEEESSHH
T ss_pred CeEEEEECCCHHHHHHHHHHhHCCCEEEeccCCHH
Confidence 57899999999999999999999999999997653
No 380
>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B.
Probab=97.03 E-value=0.0007 Score=38.84 Aligned_cols=34 Identities=26% Similarity=0.333 Sum_probs=30.4
Q ss_pred ccccEEEECCCHHHHHHHHHHHHCCCceEEEcCC
Q 047339 4 VEKDVVIIGAGIAGLATALALKRLGIKPLVLEKS 37 (115)
Q Consensus 4 ~~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~ 37 (115)
...+++|||||..|..-+..|.+.|.+|+|+...
T Consensus 6 ~~~~vlVvGgG~va~~k~~~Ll~~gA~v~vis~~ 39 (103)
T PF13241_consen 6 KGKRVLVVGGGPVAARKARLLLEAGAKVTVISPE 39 (103)
T ss_dssp TT-EEEEEEESHHHHHHHHHHCCCTBEEEEEESS
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCEEEEECCc
Confidence 3568999999999999999999999999999766
No 381
>PRK07502 cyclohexadienyl dehydrogenase; Validated
Probab=97.02 E-value=0.0012 Score=44.93 Aligned_cols=38 Identities=32% Similarity=0.519 Sum_probs=31.9
Q ss_pred CCCcc-ccEEEECCCHHHHHHHHHHHHCCC--ceEEEcCCC
Q 047339 1 METVE-KDVVIIGAGIAGLATALALKRLGI--KPLVLEKSD 38 (115)
Q Consensus 1 m~~~~-~~v~IvG~G~~Gl~~A~~l~~~g~--~v~viE~~~ 38 (115)
|+.+. .+|.|||+|..|..+|..|.+.|+ +|.++++++
T Consensus 1 ~~~~~~~~I~IIG~G~mG~sla~~l~~~g~~~~V~~~dr~~ 41 (307)
T PRK07502 1 MSAPLFDRVALIGIGLIGSSLARAIRRLGLAGEIVGADRSA 41 (307)
T ss_pred CCccCCcEEEEEeeCHHHHHHHHHHHhcCCCcEEEEEECCH
Confidence 55544 579999999999999999999985 788998764
No 382
>PRK10262 thioredoxin reductase; Provisional
Probab=97.01 E-value=0.0013 Score=44.89 Aligned_cols=36 Identities=25% Similarity=0.516 Sum_probs=32.3
Q ss_pred cccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCCC
Q 047339 5 EKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGL 40 (115)
Q Consensus 5 ~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~~ 40 (115)
..+++|||+|..|+.+|..|++.+.+|+++++.+..
T Consensus 146 g~~vvVvGgG~~g~e~A~~l~~~~~~Vtlv~~~~~~ 181 (321)
T PRK10262 146 NQKVAVIGGGNTAVEEALYLSNIASEVHLIHRRDGF 181 (321)
T ss_pred CCEEEEECCCHHHHHHHHHHHhhCCEEEEEEECCcc
Confidence 358999999999999999999999999999987643
No 383
>PRK12831 putative oxidoreductase; Provisional
Probab=97.01 E-value=0.0013 Score=47.33 Aligned_cols=34 Identities=24% Similarity=0.412 Sum_probs=31.1
Q ss_pred ccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCC
Q 047339 6 KDVVIIGAGIAGLATALALKRLGIKPLVLEKSDG 39 (115)
Q Consensus 6 ~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~ 39 (115)
.+|+|||||.+|+.+|..|.+.|.+|+++++...
T Consensus 282 k~VvVIGgG~va~d~A~~l~r~Ga~Vtlv~r~~~ 315 (464)
T PRK12831 282 KKVAVVGGGNVAMDAARTALRLGAEVHIVYRRSE 315 (464)
T ss_pred CeEEEECCcHHHHHHHHHHHHcCCEEEEEeecCc
Confidence 6899999999999999999999999999987543
No 384
>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.
Probab=97.01 E-value=0.0018 Score=41.56 Aligned_cols=33 Identities=33% Similarity=0.486 Sum_probs=30.2
Q ss_pred cccEEEECCCHHHHHHHHHHHHCCC-ceEEEcCC
Q 047339 5 EKDVVIIGAGIAGLATALALKRLGI-KPLVLEKS 37 (115)
Q Consensus 5 ~~~v~IvG~G~~Gl~~A~~l~~~g~-~v~viE~~ 37 (115)
+.+|+|||+|-.|...|..|++.|+ +++++|..
T Consensus 21 ~~~V~IvG~GglGs~ia~~La~~Gvg~i~lvD~D 54 (200)
T TIGR02354 21 QATVAICGLGGLGSNVAINLARAGIGKLILVDFD 54 (200)
T ss_pred CCcEEEECcCHHHHHHHHHHHHcCCCEEEEECCC
Confidence 5689999999999999999999999 59999876
No 385
>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated
Probab=97.00 E-value=0.0015 Score=47.46 Aligned_cols=36 Identities=22% Similarity=0.255 Sum_probs=31.9
Q ss_pred ccccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCC
Q 047339 4 VEKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDG 39 (115)
Q Consensus 4 ~~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~ 39 (115)
+-.+|.|||+|..|...|..|+++|++|+++|+++.
T Consensus 3 ~i~kIavIG~G~MG~~iA~~la~~G~~V~v~D~~~~ 38 (495)
T PRK07531 3 MIMKAACIGGGVIGGGWAARFLLAGIDVAVFDPHPE 38 (495)
T ss_pred CcCEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHH
Confidence 345799999999999999999999999999997643
No 386
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=96.97 E-value=0.0016 Score=45.05 Aligned_cols=33 Identities=30% Similarity=0.498 Sum_probs=29.8
Q ss_pred ccEEEECCCHHHHHHHHHHHHCCCc-eEEEcCCC
Q 047339 6 KDVVIIGAGIAGLATALALKRLGIK-PLVLEKSD 38 (115)
Q Consensus 6 ~~v~IvG~G~~Gl~~A~~l~~~g~~-v~viE~~~ 38 (115)
.+++|||+|+.|+.+|..|.+.|.+ |+|+++..
T Consensus 173 ~~vvViG~G~~g~e~A~~l~~~g~~~Vtvi~~~~ 206 (352)
T PRK12770 173 KKVVVVGAGLTAVDAALEAVLLGAEKVYLAYRRT 206 (352)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCCeEEEEeecc
Confidence 5799999999999999999999987 99998754
No 387
>COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism]
Probab=96.96 E-value=0.0013 Score=44.90 Aligned_cols=32 Identities=28% Similarity=0.442 Sum_probs=29.3
Q ss_pred cEEEECCCHHHHHHHHHHHHCCCceEEEcCCC
Q 047339 7 DVVIIGAGIAGLATALALKRLGIKPLVLEKSD 38 (115)
Q Consensus 7 ~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~ 38 (115)
+|.|+|+|..|+..|+.|++.|.+|+++-|.+
T Consensus 2 kI~IlGaGAvG~l~g~~L~~~g~~V~~~~R~~ 33 (307)
T COG1893 2 KILILGAGAIGSLLGARLAKAGHDVTLLVRSR 33 (307)
T ss_pred eEEEECCcHHHHHHHHHHHhCCCeEEEEecHH
Confidence 79999999999999999999998888887665
No 388
>PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=96.96 E-value=0.0023 Score=45.67 Aligned_cols=39 Identities=18% Similarity=0.292 Sum_probs=33.5
Q ss_pred CCCccccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCC
Q 047339 1 METVEKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDG 39 (115)
Q Consensus 1 m~~~~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~ 39 (115)
|+....+++|+|.|.+|+.+|..|+++|++|++.|..+.
T Consensus 1 ~~~~~~~~~v~G~g~~G~~~a~~l~~~g~~v~~~d~~~~ 39 (445)
T PRK04308 1 MTFQNKKILVAGLGGTGISMIAYLRKNGAEVAAYDAELK 39 (445)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCCC
Confidence 444456899999999999999999999999999996554
No 389
>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=96.93 E-value=0.0021 Score=45.81 Aligned_cols=38 Identities=29% Similarity=0.397 Sum_probs=32.5
Q ss_pred CCCccccEEEECCCHHHHHHHHHHHHCCCceEEEcCCC
Q 047339 1 METVEKDVVIIGAGIAGLATALALKRLGIKPLVLEKSD 38 (115)
Q Consensus 1 m~~~~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~ 38 (115)
|......++|+|+|.+|+++|..|++.|++|.+.|+..
T Consensus 1 ~~~~~k~v~v~G~g~~G~s~a~~l~~~G~~V~~~d~~~ 38 (447)
T PRK02472 1 TEYQNKKVLVLGLAKSGYAAAKLLHKLGANVTVNDGKP 38 (447)
T ss_pred CCcCCCEEEEEeeCHHHHHHHHHHHHCCCEEEEEcCCC
Confidence 44344678999999999999999999999999998654
No 390
>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP. Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....
Probab=96.90 E-value=0.0022 Score=38.40 Aligned_cols=34 Identities=38% Similarity=0.505 Sum_probs=29.4
Q ss_pred cccEEEECCCHHHHHHHHHHHHCCC-ceEEEcCCC
Q 047339 5 EKDVVIIGAGIAGLATALALKRLGI-KPLVLEKSD 38 (115)
Q Consensus 5 ~~~v~IvG~G~~Gl~~A~~l~~~g~-~v~viE~~~ 38 (115)
+.+|+|+|+|..|..+|..|++.|+ +++|+|...
T Consensus 2 ~~~v~iiG~G~vGs~va~~L~~~Gv~~i~lvD~d~ 36 (135)
T PF00899_consen 2 NKRVLIIGAGGVGSEVAKNLARSGVGKITLVDDDI 36 (135)
T ss_dssp T-EEEEESTSHHHHHHHHHHHHHTTSEEEEEESSB
T ss_pred CCEEEEECcCHHHHHHHHHHHHhCCCceeecCCcc
Confidence 4689999999999999999999998 688998644
No 391
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=96.90 E-value=0.0015 Score=43.96 Aligned_cols=32 Identities=25% Similarity=0.467 Sum_probs=29.8
Q ss_pred cEEEECCCHHHHHHHHHHHHCCCceEEEcCCC
Q 047339 7 DVVIIGAGIAGLATALALKRLGIKPLVLEKSD 38 (115)
Q Consensus 7 ~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~ 38 (115)
+|.|||.|..|..+|..|.++|++|.++++++
T Consensus 2 ~I~IIG~G~mG~sla~~L~~~g~~V~~~d~~~ 33 (279)
T PRK07417 2 KIGIVGLGLIGGSLGLDLRSLGHTVYGVSRRE 33 (279)
T ss_pred eEEEEeecHHHHHHHHHHHHCCCEEEEEECCH
Confidence 69999999999999999999999999999764
No 392
>PRK06223 malate dehydrogenase; Reviewed
Probab=96.89 E-value=0.0023 Score=43.49 Aligned_cols=34 Identities=29% Similarity=0.444 Sum_probs=30.2
Q ss_pred ccEEEECCCHHHHHHHHHHHHCCC-ceEEEcCCCC
Q 047339 6 KDVVIIGAGIAGLATALALKRLGI-KPLVLEKSDG 39 (115)
Q Consensus 6 ~~v~IvG~G~~Gl~~A~~l~~~g~-~v~viE~~~~ 39 (115)
++|+|||+|..|..+|..++..|+ ++.++|.++.
T Consensus 3 ~KI~VIGaG~vG~~ia~~la~~~~~ev~L~D~~~~ 37 (307)
T PRK06223 3 KKISIIGAGNVGATLAHLLALKELGDVVLFDIVEG 37 (307)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCeEEEEEECCCc
Confidence 589999999999999999999876 8999998554
No 393
>PRK04148 hypothetical protein; Provisional
Probab=96.89 E-value=0.0011 Score=39.89 Aligned_cols=33 Identities=27% Similarity=0.423 Sum_probs=29.7
Q ss_pred ccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCC
Q 047339 6 KDVVIIGAGIAGLATALALKRLGIKPLVLEKSDG 39 (115)
Q Consensus 6 ~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~ 39 (115)
.++++||.| .|..+|..|++.|++|+.+|.++.
T Consensus 18 ~kileIG~G-fG~~vA~~L~~~G~~ViaIDi~~~ 50 (134)
T PRK04148 18 KKIVELGIG-FYFKVAKKLKESGFDVIVIDINEK 50 (134)
T ss_pred CEEEEEEec-CCHHHHHHHHHCCCEEEEEECCHH
Confidence 569999999 899899999999999999997765
No 394
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=96.88 E-value=0.0021 Score=37.26 Aligned_cols=56 Identities=29% Similarity=0.282 Sum_probs=38.0
Q ss_pred EEEECCCHHHHHHHHHHHHCCCceEEEcCCCCCC----Cc-ceeeeeCccHHHHHHHcCCh
Q 047339 8 VVIIGAGIAGLATALALKRLGIKPLVLEKSDGLR----GT-GAAINFAPNAWLALDALGVS 63 (115)
Q Consensus 8 v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~~~----~~-~~~~~~~~~~~~~l~~~g~~ 63 (115)
|+|+|.|..|..++..|.+.+.+|+++|+++... .. -..+.-.+...+.|++.++.
T Consensus 1 vvI~G~g~~~~~i~~~L~~~~~~vvvid~d~~~~~~~~~~~~~~i~gd~~~~~~l~~a~i~ 61 (116)
T PF02254_consen 1 VVIIGYGRIGREIAEQLKEGGIDVVVIDRDPERVEELREEGVEVIYGDATDPEVLERAGIE 61 (116)
T ss_dssp EEEES-SHHHHHHHHHHHHTTSEEEEEESSHHHHHHHHHTTSEEEES-TTSHHHHHHTTGG
T ss_pred eEEEcCCHHHHHHHHHHHhCCCEEEEEECCcHHHHHHHhcccccccccchhhhHHhhcCcc
Confidence 6899999999999999999888999999876421 11 12223333345667766654
No 395
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=96.88 E-value=0.002 Score=45.11 Aligned_cols=34 Identities=32% Similarity=0.460 Sum_probs=31.0
Q ss_pred cccEEEECCCHHHHHHHHHHHHCCCceEEEcCCC
Q 047339 5 EKDVVIIGAGIAGLATALALKRLGIKPLVLEKSD 38 (115)
Q Consensus 5 ~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~ 38 (115)
..+++|+|+|.+|+.++..|.+.|.+|.+++++.
T Consensus 167 ~~~VlViGaG~vG~~aa~~a~~lGa~V~v~d~~~ 200 (370)
T TIGR00518 167 PGDVTIIGGGVVGTNAAKMANGLGATVTILDINI 200 (370)
T ss_pred CceEEEEcCCHHHHHHHHHHHHCCCeEEEEECCH
Confidence 4679999999999999999999999999999764
No 396
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=96.86 E-value=0.002 Score=46.96 Aligned_cols=35 Identities=34% Similarity=0.460 Sum_probs=32.1
Q ss_pred ccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCCC
Q 047339 6 KDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGL 40 (115)
Q Consensus 6 ~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~~ 40 (115)
.+|+|||||.+|+.+|..|+..+.+|+|+++.+..
T Consensus 352 k~VvVVGgG~~g~e~A~~L~~~~~~Vtlv~~~~~l 386 (517)
T PRK15317 352 KRVAVIGGGNSGVEAAIDLAGIVKHVTVLEFAPEL 386 (517)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCEEEEEEECccc
Confidence 58999999999999999999999999999987654
No 397
>PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []. L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C ....
Probab=96.86 E-value=0.0032 Score=38.19 Aligned_cols=32 Identities=34% Similarity=0.584 Sum_probs=28.3
Q ss_pred cEEEECC-CHHHHHHHHHHHHCCC--ceEEEcCCC
Q 047339 7 DVVIIGA-GIAGLATALALKRLGI--KPLVLEKSD 38 (115)
Q Consensus 7 ~v~IvG~-G~~Gl~~A~~l~~~g~--~v~viE~~~ 38 (115)
+|.|||+ |..|..+|+.|...++ ++.++|.++
T Consensus 2 KV~IiGa~G~VG~~~a~~l~~~~l~~ei~L~D~~~ 36 (141)
T PF00056_consen 2 KVAIIGAAGNVGSTLALLLAQQGLADEIVLIDINE 36 (141)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTTTSSEEEEEESSH
T ss_pred EEEEECCCChHHHHHHHHHHhCCCCCceEEeccCc
Confidence 7999999 9999999999999885 588888764
No 398
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=96.83 E-value=0.0028 Score=43.87 Aligned_cols=34 Identities=47% Similarity=0.632 Sum_probs=30.6
Q ss_pred cccEEEECCCHHHHHHHHHHHHCCC-ceEEEcCCC
Q 047339 5 EKDVVIIGAGIAGLATALALKRLGI-KPLVLEKSD 38 (115)
Q Consensus 5 ~~~v~IvG~G~~Gl~~A~~l~~~g~-~v~viE~~~ 38 (115)
..+|+|||+|-.|..+|..|++.|+ +++|+|...
T Consensus 24 ~~~VlIiG~GglGs~va~~La~aGvg~i~lvD~D~ 58 (338)
T PRK12475 24 EKHVLIVGAGALGAANAEALVRAGIGKLTIADRDY 58 (338)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCc
Confidence 4689999999999999999999998 788898764
No 399
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=96.83 E-value=0.0024 Score=45.35 Aligned_cols=35 Identities=29% Similarity=0.305 Sum_probs=31.4
Q ss_pred cccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCC
Q 047339 5 EKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDG 39 (115)
Q Consensus 5 ~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~ 39 (115)
-..|+|+|+|+.|+.+|..++..|.+|+++|.++.
T Consensus 202 GktVvViG~G~IG~~va~~ak~~Ga~ViV~d~d~~ 236 (413)
T cd00401 202 GKVAVVAGYGDVGKGCAQSLRGQGARVIVTEVDPI 236 (413)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEECChh
Confidence 35799999999999999999999999999987653
No 400
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=96.82 E-value=0.0042 Score=37.32 Aligned_cols=35 Identities=40% Similarity=0.495 Sum_probs=31.1
Q ss_pred ccccEEEECCCHHHHHHHHHHHHCCCc-eEEEcCCC
Q 047339 4 VEKDVVIIGAGIAGLATALALKRLGIK-PLVLEKSD 38 (115)
Q Consensus 4 ~~~~v~IvG~G~~Gl~~A~~l~~~g~~-v~viE~~~ 38 (115)
...+++|+|+|-+|-.++..|...|.+ ++|+.|+.
T Consensus 11 ~~~~vlviGaGg~ar~v~~~L~~~g~~~i~i~nRt~ 46 (135)
T PF01488_consen 11 KGKRVLVIGAGGAARAVAAALAALGAKEITIVNRTP 46 (135)
T ss_dssp TTSEEEEESSSHHHHHHHHHHHHTTSSEEEEEESSH
T ss_pred CCCEEEEECCHHHHHHHHHHHHHcCCCEEEEEECCH
Confidence 357899999999999999999999987 99998764
No 401
>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC. This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.
Probab=96.82 E-value=0.0023 Score=46.58 Aligned_cols=34 Identities=26% Similarity=0.348 Sum_probs=31.4
Q ss_pred ccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCC
Q 047339 6 KDVVIIGAGIAGLATALALKRLGIKPLVLEKSDG 39 (115)
Q Consensus 6 ~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~ 39 (115)
.+|.|||+|..|.-.|..++++|++|+++|+++.
T Consensus 6 ~kV~VIGaG~MG~gIA~~la~aG~~V~l~d~~~e 39 (503)
T TIGR02279 6 VTVAVIGAGAMGAGIAQVAASAGHQVLLYDIRAE 39 (503)
T ss_pred cEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHH
Confidence 5699999999999999999999999999998754
No 402
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=96.81 E-value=0.002 Score=46.92 Aligned_cols=35 Identities=34% Similarity=0.460 Sum_probs=31.6
Q ss_pred cccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCC
Q 047339 5 EKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDG 39 (115)
Q Consensus 5 ~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~ 39 (115)
..+|+|+|+|++|+.++..++..|.+|.++|.++.
T Consensus 165 g~kVlViGaG~iGL~Ai~~Ak~lGA~V~a~D~~~~ 199 (509)
T PRK09424 165 PAKVLVIGAGVAGLAAIGAAGSLGAIVRAFDTRPE 199 (509)
T ss_pred CCEEEEECCcHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence 56899999999999999999999999999987653
No 403
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=96.79 E-value=0.0033 Score=38.93 Aligned_cols=34 Identities=29% Similarity=0.366 Sum_probs=29.5
Q ss_pred ccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCC
Q 047339 6 KDVVIIGAGIAGLATALALKRLGIKPLVLEKSDG 39 (115)
Q Consensus 6 ~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~ 39 (115)
.+|.+||-|..|...|..|.++|++|.++++++.
T Consensus 2 ~~Ig~IGlG~mG~~~a~~L~~~g~~v~~~d~~~~ 35 (163)
T PF03446_consen 2 MKIGFIGLGNMGSAMARNLAKAGYEVTVYDRSPE 35 (163)
T ss_dssp BEEEEE--SHHHHHHHHHHHHTTTEEEEEESSHH
T ss_pred CEEEEEchHHHHHHHHHHHHhcCCeEEeeccchh
Confidence 5799999999999999999999999999998753
No 404
>PTZ00082 L-lactate dehydrogenase; Provisional
Probab=96.78 E-value=0.0034 Score=43.16 Aligned_cols=34 Identities=15% Similarity=0.301 Sum_probs=30.8
Q ss_pred ccEEEECCCHHHHHHHHHHHHCCC-ceEEEcCCCC
Q 047339 6 KDVVIIGAGIAGLATALALKRLGI-KPLVLEKSDG 39 (115)
Q Consensus 6 ~~v~IvG~G~~Gl~~A~~l~~~g~-~v~viE~~~~ 39 (115)
.+|+|||+|..|...|+.++..|+ ++.|+|.++.
T Consensus 7 ~KI~IIGaG~vG~~ia~~la~~gl~~i~LvDi~~~ 41 (321)
T PTZ00082 7 RKISLIGSGNIGGVMAYLIVLKNLGDVVLFDIVKN 41 (321)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCeEEEEeCCCc
Confidence 589999999999999999999996 8999997665
No 405
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=96.78 E-value=0.0038 Score=46.38 Aligned_cols=59 Identities=22% Similarity=0.187 Sum_probs=42.5
Q ss_pred cccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCCCCC----cce-eeeeCccHHHHHHHcCCh
Q 047339 5 EKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGLRG----TGA-AINFAPNAWLALDALGVS 63 (115)
Q Consensus 5 ~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~~~~----~~~-~~~~~~~~~~~l~~~g~~ 63 (115)
+.+++|+|.|..|..+|..|.++|++++++|.++..-. .+. .+.-.+...+.|++.|+.
T Consensus 400 ~~~vII~G~Gr~G~~va~~L~~~g~~vvvID~d~~~v~~~~~~g~~v~~GDat~~~~L~~agi~ 463 (601)
T PRK03659 400 KPQVIIVGFGRFGQVIGRLLMANKMRITVLERDISAVNLMRKYGYKVYYGDATQLELLRAAGAE 463 (601)
T ss_pred cCCEEEecCchHHHHHHHHHHhCCCCEEEEECCHHHHHHHHhCCCeEEEeeCCCHHHHHhcCCc
Confidence 46899999999999999999999999999998765311 111 122223345677777764
No 406
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=96.78 E-value=0.0026 Score=42.55 Aligned_cols=36 Identities=28% Similarity=0.529 Sum_probs=31.9
Q ss_pred cccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCCC
Q 047339 5 EKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGL 40 (115)
Q Consensus 5 ~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~~ 40 (115)
..+++|||+|++|+-+|..|++.+.+|+++++.+..
T Consensus 141 ~~~v~ViG~G~~~~e~a~~l~~~~~~V~~v~~~~~~ 176 (300)
T TIGR01292 141 NKEVAVVGGGDSAIEEALYLTRIAKKVTLVHRRDKF 176 (300)
T ss_pred CCEEEEECCChHHHHHHHHHHhhcCEEEEEEeCccc
Confidence 358999999999999999999999999999986543
No 407
>PRK11559 garR tartronate semialdehyde reductase; Provisional
Probab=96.78 E-value=0.0028 Score=42.84 Aligned_cols=33 Identities=27% Similarity=0.408 Sum_probs=30.4
Q ss_pred ccEEEECCCHHHHHHHHHHHHCCCceEEEcCCC
Q 047339 6 KDVVIIGAGIAGLATALALKRLGIKPLVLEKSD 38 (115)
Q Consensus 6 ~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~ 38 (115)
.+|.|||.|..|...|..|++.|++|.++++++
T Consensus 3 ~~IgviG~G~mG~~~a~~l~~~g~~v~~~d~~~ 35 (296)
T PRK11559 3 MKVGFIGLGIMGKPMSKNLLKAGYSLVVYDRNP 35 (296)
T ss_pred ceEEEEccCHHHHHHHHHHHHCCCeEEEEcCCH
Confidence 479999999999999999999999999998764
No 408
>PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated
Probab=96.77 E-value=0.0028 Score=46.17 Aligned_cols=34 Identities=29% Similarity=0.453 Sum_probs=31.5
Q ss_pred ccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCC
Q 047339 6 KDVVIIGAGIAGLATALALKRLGIKPLVLEKSDG 39 (115)
Q Consensus 6 ~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~ 39 (115)
.+|.|||+|..|.-.|..++++|++|+++|+++.
T Consensus 8 ~~V~VIGaG~MG~gIA~~la~aG~~V~l~D~~~e 41 (507)
T PRK08268 8 ATVAVIGAGAMGAGIAQVAAQAGHTVLLYDARAG 41 (507)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCeEEEEeCCHH
Confidence 5699999999999999999999999999998765
No 409
>PLN02353 probable UDP-glucose 6-dehydrogenase
Probab=96.75 E-value=0.0027 Score=45.90 Aligned_cols=34 Identities=26% Similarity=0.274 Sum_probs=29.8
Q ss_pred ccEEEECCCHHHHHHHHHHHHCC--CceEEEcCCCC
Q 047339 6 KDVVIIGAGIAGLATALALKRLG--IKPLVLEKSDG 39 (115)
Q Consensus 6 ~~v~IvG~G~~Gl~~A~~l~~~g--~~v~viE~~~~ 39 (115)
++|+|||.|..|+.+|..|++.| ++|+.+|.++.
T Consensus 2 m~I~ViG~GyvGl~~A~~lA~~g~g~~V~gvD~~~~ 37 (473)
T PLN02353 2 VKICCIGAGYVGGPTMAVIALKCPDIEVVVVDISVP 37 (473)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCCeEEEEECCHH
Confidence 47999999999999999999985 77999997654
No 410
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=96.74 E-value=0.0033 Score=44.27 Aligned_cols=33 Identities=27% Similarity=0.398 Sum_probs=30.9
Q ss_pred ccEEEECCCHHHHHHHHHHHHCC-CceEEEcCCC
Q 047339 6 KDVVIIGAGIAGLATALALKRLG-IKPLVLEKSD 38 (115)
Q Consensus 6 ~~v~IvG~G~~Gl~~A~~l~~~g-~~v~viE~~~ 38 (115)
.+|+|+|+|-.|..+|..|++++ .+|++-+|+.
T Consensus 2 ~~ilviGaG~Vg~~va~~la~~~d~~V~iAdRs~ 35 (389)
T COG1748 2 MKILVIGAGGVGSVVAHKLAQNGDGEVTIADRSK 35 (389)
T ss_pred CcEEEECCchhHHHHHHHHHhCCCceEEEEeCCH
Confidence 68999999999999999999999 8999999874
No 411
>TIGR01915 npdG NADPH-dependent F420 reductase. This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.
Probab=96.73 E-value=0.0034 Score=40.76 Aligned_cols=32 Identities=25% Similarity=0.411 Sum_probs=29.2
Q ss_pred cEEEEC-CCHHHHHHHHHHHHCCCceEEEcCCC
Q 047339 7 DVVIIG-AGIAGLATALALKRLGIKPLVLEKSD 38 (115)
Q Consensus 7 ~v~IvG-~G~~Gl~~A~~l~~~g~~v~viE~~~ 38 (115)
+|.||| +|..|..+|..|.+.|++|.++++++
T Consensus 2 kI~IIGG~G~mG~ala~~L~~~G~~V~v~~r~~ 34 (219)
T TIGR01915 2 KIAVLGGTGDQGKGLALRLAKAGNKIIIGSRDL 34 (219)
T ss_pred EEEEEcCCCHHHHHHHHHHHhCCCEEEEEEcCH
Confidence 699997 79999999999999999999998765
No 412
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=96.72 E-value=0.0039 Score=43.20 Aligned_cols=34 Identities=44% Similarity=0.635 Sum_probs=30.8
Q ss_pred cccEEEECCCHHHHHHHHHHHHCCC-ceEEEcCCC
Q 047339 5 EKDVVIIGAGIAGLATALALKRLGI-KPLVLEKSD 38 (115)
Q Consensus 5 ~~~v~IvG~G~~Gl~~A~~l~~~g~-~v~viE~~~ 38 (115)
+.+|+|||+|-.|..+|..|++.|+ +++|+|...
T Consensus 24 ~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~ 58 (339)
T PRK07688 24 EKHVLIIGAGALGTANAEMLVRAGVGKVTIVDRDY 58 (339)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCc
Confidence 5689999999999999999999998 899999753
No 413
>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases. L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine
Probab=96.72 E-value=0.0037 Score=42.66 Aligned_cols=33 Identities=33% Similarity=0.488 Sum_probs=29.5
Q ss_pred cEEEECCCHHHHHHHHHHHHCC--CceEEEcCCCC
Q 047339 7 DVVIIGAGIAGLATALALKRLG--IKPLVLEKSDG 39 (115)
Q Consensus 7 ~v~IvG~G~~Gl~~A~~l~~~g--~~v~viE~~~~ 39 (115)
+|+|||+|.+|.++|+.|+..| ..+.++|++..
T Consensus 2 kI~IIGaG~vG~~~a~~l~~~g~~~ei~l~D~~~~ 36 (306)
T cd05291 2 KVVIIGAGHVGSSFAYSLVNQGIADELVLIDINEE 36 (306)
T ss_pred EEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCcc
Confidence 6999999999999999999999 47999998654
No 414
>PRK15057 UDP-glucose 6-dehydrogenase; Provisional
Probab=96.71 E-value=0.0027 Score=44.74 Aligned_cols=32 Identities=22% Similarity=0.419 Sum_probs=28.7
Q ss_pred cEEEECCCHHHHHHHHHHHHCCCceEEEcCCCC
Q 047339 7 DVVIIGAGIAGLATALALKRLGIKPLVLEKSDG 39 (115)
Q Consensus 7 ~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~ 39 (115)
+|.|||.|..|+.+|..++. |++|+++|.++.
T Consensus 2 kI~VIGlGyvGl~~A~~lA~-G~~VigvD~d~~ 33 (388)
T PRK15057 2 KITISGTGYVGLSNGLLIAQ-NHEVVALDILPS 33 (388)
T ss_pred EEEEECCCHHHHHHHHHHHh-CCcEEEEECCHH
Confidence 69999999999999988875 999999998764
No 415
>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=96.70 E-value=0.0025 Score=48.25 Aligned_cols=34 Identities=24% Similarity=0.389 Sum_probs=31.4
Q ss_pred ccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCC
Q 047339 6 KDVVIIGAGIAGLATALALKRLGIKPLVLEKSDG 39 (115)
Q Consensus 6 ~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~ 39 (115)
.+|.|||+|..|.-.|..++..|++|+++|.++.
T Consensus 314 ~~v~ViGaG~mG~gIA~~~a~~G~~V~l~d~~~~ 347 (715)
T PRK11730 314 KQAAVLGAGIMGGGIAYQSASKGVPVIMKDINQK 347 (715)
T ss_pred ceEEEECCchhHHHHHHHHHhCCCeEEEEeCCHH
Confidence 4699999999999999999999999999998764
No 416
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=96.68 E-value=0.0031 Score=44.94 Aligned_cols=33 Identities=24% Similarity=0.400 Sum_probs=30.6
Q ss_pred cEEEECCCHHHHHHHHHHHHCCCceEEEcCCCC
Q 047339 7 DVVIIGAGIAGLATALALKRLGIKPLVLEKSDG 39 (115)
Q Consensus 7 ~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~ 39 (115)
+|+|+|+|..|..+|..|.+.|++|.++|+++.
T Consensus 2 ~viIiG~G~ig~~~a~~L~~~g~~v~vid~~~~ 34 (453)
T PRK09496 2 KIIIVGAGQVGYTLAENLSGENNDVTVIDTDEE 34 (453)
T ss_pred EEEEECCCHHHHHHHHHHHhCCCcEEEEECCHH
Confidence 799999999999999999999999999998654
No 417
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=96.67 E-value=0.0037 Score=44.83 Aligned_cols=34 Identities=32% Similarity=0.493 Sum_probs=30.6
Q ss_pred cccEEEECCCHHHHHHHHHHHHCCC-ceEEEcCCC
Q 047339 5 EKDVVIIGAGIAGLATALALKRLGI-KPLVLEKSD 38 (115)
Q Consensus 5 ~~~v~IvG~G~~Gl~~A~~l~~~g~-~v~viE~~~ 38 (115)
..+|+|||+|.+|+.+|..|.+.|. +|+++++..
T Consensus 273 g~~VvViGgG~~g~e~A~~l~~~G~~~Vtlv~~~~ 307 (457)
T PRK11749 273 GKRVVVIGGGNTAMDAARTAKRLGAESVTIVYRRG 307 (457)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCCeEEEeeecC
Confidence 3689999999999999999999998 899998754
No 418
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=96.64 E-value=0.0048 Score=38.61 Aligned_cols=34 Identities=24% Similarity=0.220 Sum_probs=30.0
Q ss_pred ccccEEEECCCH-HHHHHHHHHHHCCCceEEEcCC
Q 047339 4 VEKDVVIIGAGI-AGLATALALKRLGIKPLVLEKS 37 (115)
Q Consensus 4 ~~~~v~IvG~G~-~Gl~~A~~l~~~g~~v~viE~~ 37 (115)
..++++|||+|- +|..+|.+|.+.|.+|.++.+.
T Consensus 43 ~gk~vlViG~G~~~G~~~a~~L~~~g~~V~v~~r~ 77 (168)
T cd01080 43 AGKKVVVVGRSNIVGKPLAALLLNRNATVTVCHSK 77 (168)
T ss_pred CCCEEEEECCcHHHHHHHHHHHhhCCCEEEEEECC
Confidence 357899999996 6999999999999999999876
No 419
>cd01487 E1_ThiF_like E1_ThiF_like. Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=96.61 E-value=0.006 Score=38.33 Aligned_cols=32 Identities=31% Similarity=0.327 Sum_probs=28.7
Q ss_pred cEEEECCCHHHHHHHHHHHHCCCc-eEEEcCCC
Q 047339 7 DVVIIGAGIAGLATALALKRLGIK-PLVLEKSD 38 (115)
Q Consensus 7 ~v~IvG~G~~Gl~~A~~l~~~g~~-v~viE~~~ 38 (115)
+|+|||+|-.|...|..|++.|+. ++++|...
T Consensus 1 ~VlViG~GglGs~ia~~La~~Gvg~i~lvD~D~ 33 (174)
T cd01487 1 KVGIAGAGGLGSNIAVLLARSGVGNLKLVDFDV 33 (174)
T ss_pred CEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCE
Confidence 489999999999999999999985 99998654
No 420
>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.
Probab=96.61 E-value=0.0032 Score=47.69 Aligned_cols=34 Identities=24% Similarity=0.332 Sum_probs=31.3
Q ss_pred ccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCC
Q 047339 6 KDVVIIGAGIAGLATALALKRLGIKPLVLEKSDG 39 (115)
Q Consensus 6 ~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~ 39 (115)
.+|.|||+|..|.-.|..++.+|++|+++|.++.
T Consensus 314 ~~v~ViGaG~mG~gIA~~~a~~G~~V~l~d~~~~ 347 (714)
T TIGR02437 314 KQAAVLGAGIMGGGIAYQSASKGTPIVMKDINQH 347 (714)
T ss_pred ceEEEECCchHHHHHHHHHHhCCCeEEEEeCCHH
Confidence 4689999999999999999999999999997764
No 421
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=96.60 E-value=0.0042 Score=47.27 Aligned_cols=34 Identities=26% Similarity=0.483 Sum_probs=30.7
Q ss_pred ccEEEECCCHHHHHHHHHHHHCCCc-eEEEcCCCC
Q 047339 6 KDVVIIGAGIAGLATALALKRLGIK-PLVLEKSDG 39 (115)
Q Consensus 6 ~~v~IvG~G~~Gl~~A~~l~~~g~~-v~viE~~~~ 39 (115)
.+|+|||||.+|+.+|..+.+.|.+ |+++++...
T Consensus 571 k~VvVIGgG~~a~d~A~~~~r~Ga~~Vtlv~r~~~ 605 (752)
T PRK12778 571 KKVAVVGGGNTAMDSARTAKRLGAERVTIVYRRSE 605 (752)
T ss_pred CcEEEECCcHHHHHHHHHHHHcCCCeEEEeeecCc
Confidence 5899999999999999999999997 999987643
No 422
>PTZ00117 malate dehydrogenase; Provisional
Probab=96.60 E-value=0.0055 Score=42.12 Aligned_cols=35 Identities=26% Similarity=0.387 Sum_probs=30.7
Q ss_pred cccEEEECCCHHHHHHHHHHHHCC-CceEEEcCCCC
Q 047339 5 EKDVVIIGAGIAGLATALALKRLG-IKPLVLEKSDG 39 (115)
Q Consensus 5 ~~~v~IvG~G~~Gl~~A~~l~~~g-~~v~viE~~~~ 39 (115)
..+|+|||+|..|..+|+.++..| .++.|+|.++.
T Consensus 5 ~~KI~IIGaG~vG~~ia~~l~~~~~~~l~L~Di~~~ 40 (319)
T PTZ00117 5 RKKISMIGAGQIGSTVALLILQKNLGDVVLYDVIKG 40 (319)
T ss_pred CcEEEEECCCHHHHHHHHHHHHCCCCeEEEEECCCc
Confidence 468999999999999999999998 58889997653
No 423
>COG5044 MRS6 RAB proteins geranylgeranyltransferase component A (RAB escort protein) [Posttranslational modification, protein turnover, chaperones]
Probab=96.60 E-value=0.0055 Score=42.84 Aligned_cols=42 Identities=31% Similarity=0.370 Sum_probs=37.2
Q ss_pred cccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCCCCCccee
Q 047339 5 EKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGLRGTGAA 46 (115)
Q Consensus 5 ~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~~~~~~~~ 46 (115)
.+||+|+|-|+.=+.++..|+..|.+|+.+|+++.-+....+
T Consensus 6 ~yDvii~GTgl~esils~~Ls~~~k~VlhiD~Nd~YG~~~as 47 (434)
T COG5044 6 LYDVIILGTGLRESILSAALSWDGKNVLHIDKNDYYGSTSAS 47 (434)
T ss_pred cccEEEecccHHHHHHHHHhhhcCceEEEEeCCCccCccccc
Confidence 699999999999999999999999999999999876554443
No 424
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=96.59 E-value=0.0061 Score=39.18 Aligned_cols=33 Identities=33% Similarity=0.537 Sum_probs=30.0
Q ss_pred cccEEEECCCHHHHHHHHHHHHCCC-ceEEEcCC
Q 047339 5 EKDVVIIGAGIAGLATALALKRLGI-KPLVLEKS 37 (115)
Q Consensus 5 ~~~v~IvG~G~~Gl~~A~~l~~~g~-~v~viE~~ 37 (115)
+.+|+|||+|-.|..+|..|++.|+ +++++|..
T Consensus 21 ~~~VlviG~GglGs~ia~~La~~Gv~~i~lvD~d 54 (202)
T TIGR02356 21 NSHVLIIGAGGLGSPAALYLAGAGVGTIVIVDDD 54 (202)
T ss_pred CCCEEEECCCHHHHHHHHHHHHcCCCeEEEecCC
Confidence 5689999999999999999999997 78898865
No 425
>PRK15116 sulfur acceptor protein CsdL; Provisional
Probab=96.55 E-value=0.0064 Score=40.83 Aligned_cols=35 Identities=29% Similarity=0.426 Sum_probs=30.7
Q ss_pred cccEEEECCCHHHHHHHHHHHHCCC-ceEEEcCCCC
Q 047339 5 EKDVVIIGAGIAGLATALALKRLGI-KPLVLEKSDG 39 (115)
Q Consensus 5 ~~~v~IvG~G~~Gl~~A~~l~~~g~-~v~viE~~~~ 39 (115)
..+|+|+|+|-.|..+|..|++.|+ +++|+|....
T Consensus 30 ~s~VlVvG~GGVGs~vae~Lar~GVg~itLiD~D~V 65 (268)
T PRK15116 30 DAHICVVGIGGVGSWAAEALARTGIGAITLIDMDDV 65 (268)
T ss_pred CCCEEEECcCHHHHHHHHHHHHcCCCEEEEEeCCEe
Confidence 5689999999999999999999994 7889986543
No 426
>TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase. This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism.
Probab=96.54 E-value=0.004 Score=42.02 Aligned_cols=33 Identities=27% Similarity=0.363 Sum_probs=30.2
Q ss_pred cEEEECCCHHHHHHHHHHHHCCCceEEEcCCCC
Q 047339 7 DVVIIGAGIAGLATALALKRLGIKPLVLEKSDG 39 (115)
Q Consensus 7 ~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~ 39 (115)
+|.|||.|..|..+|..|.+.|++|.++++++.
T Consensus 1 ~IgvIG~G~mG~~iA~~l~~~G~~V~~~dr~~~ 33 (291)
T TIGR01505 1 KVGFIGLGIMGSPMSINLAKAGYQLHVTTIGPE 33 (291)
T ss_pred CEEEEEecHHHHHHHHHHHHCCCeEEEEcCCHH
Confidence 488999999999999999999999999998753
No 427
>cd05293 LDH_1 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=96.53 E-value=0.0066 Score=41.63 Aligned_cols=34 Identities=21% Similarity=0.538 Sum_probs=29.6
Q ss_pred cccEEEECCCHHHHHHHHHHHHCCC--ceEEEcCCC
Q 047339 5 EKDVVIIGAGIAGLATALALKRLGI--KPLVLEKSD 38 (115)
Q Consensus 5 ~~~v~IvG~G~~Gl~~A~~l~~~g~--~v~viE~~~ 38 (115)
+.+|.|||+|.+|.++|+.|...+. .+.|+|.+.
T Consensus 3 ~~Ki~IiGaG~VG~~~a~~l~~~~~~~el~LiD~~~ 38 (312)
T cd05293 3 RNKVTVVGVGQVGMACAISILAKGLADELVLVDVVE 38 (312)
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCc
Confidence 4689999999999999999999885 588998755
No 428
>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=96.52 E-value=0.0053 Score=44.11 Aligned_cols=33 Identities=27% Similarity=0.511 Sum_probs=30.6
Q ss_pred ccEEEECCCHHHHHHHHHHHHCCCceEEEcCCC
Q 047339 6 KDVVIIGAGIAGLATALALKRLGIKPLVLEKSD 38 (115)
Q Consensus 6 ~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~ 38 (115)
.+|.|+|.|.+|+.+|..|.+.|++|++.|.++
T Consensus 15 ~~i~v~G~G~sG~a~a~~L~~~G~~V~~~D~~~ 47 (458)
T PRK01710 15 KKVAVVGIGVSNIPLIKFLVKLGAKVTAFDKKS 47 (458)
T ss_pred CeEEEEcccHHHHHHHHHHHHCCCEEEEECCCC
Confidence 479999999999999999999999999999764
No 429
>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=96.49 E-value=0.0051 Score=44.57 Aligned_cols=32 Identities=38% Similarity=0.664 Sum_probs=29.7
Q ss_pred ccEEEECCCHHHHHHHHHHHHCCCceEEEcCC
Q 047339 6 KDVVIIGAGIAGLATALALKRLGIKPLVLEKS 37 (115)
Q Consensus 6 ~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~ 37 (115)
.+++|+|.|.+|++++.+|.+.|.+|++.|..
T Consensus 13 ~~v~V~G~G~sG~aa~~~L~~~G~~v~~~D~~ 44 (488)
T PRK03369 13 APVLVAGAGVTGRAVLAALTRFGARPTVCDDD 44 (488)
T ss_pred CeEEEEcCCHHHHHHHHHHHHCCCEEEEEcCC
Confidence 57999999999999999999999999999954
No 430
>PRK08644 thiamine biosynthesis protein ThiF; Provisional
Probab=96.49 E-value=0.0083 Score=38.90 Aligned_cols=33 Identities=33% Similarity=0.391 Sum_probs=29.8
Q ss_pred cccEEEECCCHHHHHHHHHHHHCCCc-eEEEcCC
Q 047339 5 EKDVVIIGAGIAGLATALALKRLGIK-PLVLEKS 37 (115)
Q Consensus 5 ~~~v~IvG~G~~Gl~~A~~l~~~g~~-v~viE~~ 37 (115)
..+|+|||+|-.|...|..|++.|+. ++++|..
T Consensus 28 ~~~V~ViG~GglGs~ia~~La~~Gvg~i~lvD~D 61 (212)
T PRK08644 28 KAKVGIAGAGGLGSNIAVALARSGVGNLKLVDFD 61 (212)
T ss_pred CCCEEEECcCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence 46899999999999999999999985 8888865
No 431
>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins. This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.
Probab=96.49 E-value=0.0081 Score=36.28 Aligned_cols=32 Identities=31% Similarity=0.488 Sum_probs=28.7
Q ss_pred cEEEECCCHHHHHHHHHHHHCCC-ceEEEcCCC
Q 047339 7 DVVIIGAGIAGLATALALKRLGI-KPLVLEKSD 38 (115)
Q Consensus 7 ~v~IvG~G~~Gl~~A~~l~~~g~-~v~viE~~~ 38 (115)
+|+|||+|-.|...|..|.+.|+ +++++|...
T Consensus 1 ~VliiG~GglGs~ia~~L~~~Gv~~i~ivD~d~ 33 (143)
T cd01483 1 RVLLVGLGGLGSEIALNLARSGVGKITLIDFDT 33 (143)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEEcCCC
Confidence 48999999999999999999998 688998654
No 432
>cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins. Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas
Probab=96.47 E-value=0.0054 Score=41.71 Aligned_cols=32 Identities=31% Similarity=0.457 Sum_probs=28.6
Q ss_pred EEEECCCHHHHHHHHHHHHCCC-ceEEEcCCCC
Q 047339 8 VVIIGAGIAGLATALALKRLGI-KPLVLEKSDG 39 (115)
Q Consensus 8 v~IvG~G~~Gl~~A~~l~~~g~-~v~viE~~~~ 39 (115)
|.|||+|..|..+|..++..++ +|.++|.++.
T Consensus 1 I~IIGaG~vG~~ia~~la~~~l~eV~L~Di~e~ 33 (300)
T cd01339 1 ISIIGAGNVGATLAQLLALKELGDVVLLDIVEG 33 (300)
T ss_pred CEEECCCHHHHHHHHHHHhCCCcEEEEEeCCCc
Confidence 5799999999999999999887 9999998753
No 433
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=96.47 E-value=0.0056 Score=43.65 Aligned_cols=35 Identities=29% Similarity=0.406 Sum_probs=31.9
Q ss_pred cccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCC
Q 047339 5 EKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDG 39 (115)
Q Consensus 5 ~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~ 39 (115)
+.+++|+|+|..|..+|..|.+.|++|+++|+++.
T Consensus 231 ~~~iiIiG~G~~g~~l~~~L~~~~~~v~vid~~~~ 265 (453)
T PRK09496 231 VKRVMIVGGGNIGYYLAKLLEKEGYSVKLIERDPE 265 (453)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCeEEEEECCHH
Confidence 46799999999999999999999999999997754
No 434
>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial. Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).
Probab=96.46 E-value=0.0046 Score=46.99 Aligned_cols=34 Identities=24% Similarity=0.457 Sum_probs=31.2
Q ss_pred ccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCC
Q 047339 6 KDVVIIGAGIAGLATALALKRLGIKPLVLEKSDG 39 (115)
Q Consensus 6 ~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~ 39 (115)
.+|.|||+|..|.-.|..++..|++|+++|.++.
T Consensus 336 ~~v~ViGaG~MG~gIA~~~a~~G~~V~l~d~~~~ 369 (737)
T TIGR02441 336 KTLAVLGAGLMGAGIAQVSVDKGLKTVLKDATPA 369 (737)
T ss_pred cEEEEECCCHhHHHHHHHHHhCCCcEEEecCCHH
Confidence 4699999999999999999999999999997764
No 435
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=96.46 E-value=0.0055 Score=45.76 Aligned_cols=59 Identities=22% Similarity=0.218 Sum_probs=41.9
Q ss_pred cccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCCCC----Ccce-eeeeCccHHHHHHHcCCh
Q 047339 5 EKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGLR----GTGA-AINFAPNAWLALDALGVS 63 (115)
Q Consensus 5 ~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~~~----~~~~-~~~~~~~~~~~l~~~g~~ 63 (115)
+.+++|+|+|..|...|..|.++|++++++|+++..- ..+. .+.-.+...+.|++.|+.
T Consensus 400 ~~~vII~G~Gr~G~~va~~L~~~g~~vvvID~d~~~v~~~~~~g~~v~~GDat~~~~L~~agi~ 463 (621)
T PRK03562 400 QPRVIIAGFGRFGQIVGRLLLSSGVKMTVLDHDPDHIETLRKFGMKVFYGDATRMDLLESAGAA 463 (621)
T ss_pred cCcEEEEecChHHHHHHHHHHhCCCCEEEEECCHHHHHHHHhcCCeEEEEeCCCHHHHHhcCCC
Confidence 4689999999999999999999999999999887531 1111 122223344567766654
No 436
>PRK11880 pyrroline-5-carboxylate reductase; Reviewed
Probab=96.45 E-value=0.006 Score=40.58 Aligned_cols=33 Identities=27% Similarity=0.239 Sum_probs=29.6
Q ss_pred ccEEEECCCHHHHHHHHHHHHCC---CceEEEcCCC
Q 047339 6 KDVVIIGAGIAGLATALALKRLG---IKPLVLEKSD 38 (115)
Q Consensus 6 ~~v~IvG~G~~Gl~~A~~l~~~g---~~v~viE~~~ 38 (115)
.+|.|||+|..|...|..|.+.| .+|.++++++
T Consensus 3 m~I~iIG~G~mG~~la~~l~~~g~~~~~v~v~~r~~ 38 (267)
T PRK11880 3 KKIGFIGGGNMASAIIGGLLASGVPAKDIIVSDPSP 38 (267)
T ss_pred CEEEEEechHHHHHHHHHHHhCCCCcceEEEEcCCH
Confidence 57999999999999999999988 7888998864
No 437
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=96.43 E-value=0.008 Score=38.60 Aligned_cols=33 Identities=30% Similarity=0.375 Sum_probs=30.4
Q ss_pred ccEEEECCCHHHHHHHHHHHHCCCceEEEcCCC
Q 047339 6 KDVVIIGAGIAGLATALALKRLGIKPLVLEKSD 38 (115)
Q Consensus 6 ~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~ 38 (115)
+.++|+|.|-.|..+|..|.+.|++|+++|.+.
T Consensus 29 k~v~I~G~G~vG~~~A~~L~~~G~~Vvv~D~~~ 61 (200)
T cd01075 29 KTVAVQGLGKVGYKLAEHLLEEGAKLIVADINE 61 (200)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCH
Confidence 579999999999999999999999999998754
No 438
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=96.41 E-value=0.0067 Score=43.04 Aligned_cols=34 Identities=29% Similarity=0.460 Sum_probs=31.1
Q ss_pred cccEEEECCCHHHHHHHHHHHHCCCceEEEcCCC
Q 047339 5 EKDVVIIGAGIAGLATALALKRLGIKPLVLEKSD 38 (115)
Q Consensus 5 ~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~ 38 (115)
-..|+|+|.|+.|..+|..++..|.+|.++|.++
T Consensus 195 Gk~VvViG~G~IG~~vA~~ak~~Ga~ViV~d~dp 228 (406)
T TIGR00936 195 GKTVVVAGYGWCGKGIAMRARGMGARVIVTEVDP 228 (406)
T ss_pred cCEEEEECCCHHHHHHHHHHhhCcCEEEEEeCCh
Confidence 4579999999999999999999999999998765
No 439
>PF13478 XdhC_C: XdhC Rossmann domain; PDB: 3ON5_A 2WE8_B 2WE7_A.
Probab=96.41 E-value=0.0044 Score=37.44 Aligned_cols=32 Identities=31% Similarity=0.367 Sum_probs=27.7
Q ss_pred EEEECCCHHHHHHHHHHHHCCCceEEEcCCCC
Q 047339 8 VVIIGAGIAGLATALALKRLGIKPLVLEKSDG 39 (115)
Q Consensus 8 v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~ 39 (115)
++|+|+|+.+..++..++..|++|+++|-.+.
T Consensus 1 L~I~GaG~va~al~~la~~lg~~v~v~d~r~e 32 (136)
T PF13478_consen 1 LVIFGAGHVARALARLAALLGFRVTVVDPRPE 32 (136)
T ss_dssp EEEES-STCHHHHHHHHHHCTEEEEEEES-CC
T ss_pred CEEEeCcHHHHHHHHHHHhCCCEEEEEcCCcc
Confidence 57999999999999999999999999996654
No 440
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=96.40 E-value=0.0072 Score=41.11 Aligned_cols=35 Identities=29% Similarity=0.459 Sum_probs=32.0
Q ss_pred cccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCC
Q 047339 5 EKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDG 39 (115)
Q Consensus 5 ~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~ 39 (115)
..+++|+|.|.+|..++..|++.|.+|+++++++.
T Consensus 152 g~kvlViG~G~iG~~~a~~L~~~Ga~V~v~~r~~~ 186 (296)
T PRK08306 152 GSNVLVLGFGRTGMTLARTLKALGANVTVGARKSA 186 (296)
T ss_pred CCEEEEECCcHHHHHHHHHHHHCCCEEEEEECCHH
Confidence 56899999999999999999999999999998753
No 441
>TIGR02964 xanthine_xdhC xanthine dehydrogenase accessory protein XdhC. Members of this protein family are the accessory protein XdhC for insertion of the molybdenum cofactor into the xanthine dehydrogenase large chain, XdhB, in bacteria. This protein is not part of the mature xanthine dehydrogenase. Xanthine dehydrogenase is an enzyme for purine catabolism, from other purines to xanthine to urate to further breakdown products.
Probab=96.39 E-value=0.0084 Score=39.77 Aligned_cols=36 Identities=28% Similarity=0.339 Sum_probs=32.1
Q ss_pred ccccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCC
Q 047339 4 VEKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDG 39 (115)
Q Consensus 4 ~~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~ 39 (115)
.+.+++|+|+|+.+..+|..++..|++|+|+|-.+.
T Consensus 99 p~~~L~IfGaG~va~~la~la~~lGf~V~v~D~R~~ 134 (246)
T TIGR02964 99 PAPHVVLFGAGHVGRALVRALAPLPCRVTWVDSREA 134 (246)
T ss_pred CCCEEEEECCcHHHHHHHHHHhcCCCEEEEEeCCcc
Confidence 457899999999999999999999999999985544
No 442
>PRK08017 oxidoreductase; Provisional
Probab=96.38 E-value=0.0077 Score=39.41 Aligned_cols=33 Identities=39% Similarity=0.512 Sum_probs=29.5
Q ss_pred ccEEEECC-CHHHHHHHHHHHHCCCceEEEcCCC
Q 047339 6 KDVVIIGA-GIAGLATALALKRLGIKPLVLEKSD 38 (115)
Q Consensus 6 ~~v~IvG~-G~~Gl~~A~~l~~~g~~v~viE~~~ 38 (115)
..++|.|+ |..|..+|..|.++|++|.++.++.
T Consensus 3 k~vlVtGasg~IG~~la~~l~~~g~~v~~~~r~~ 36 (256)
T PRK08017 3 KSVLITGCSSGIGLEAALELKRRGYRVLAACRKP 36 (256)
T ss_pred CEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCH
Confidence 46999998 9999999999999999999988754
No 443
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=96.37 E-value=0.0066 Score=42.17 Aligned_cols=33 Identities=36% Similarity=0.528 Sum_probs=27.5
Q ss_pred cEEEECCCHHHHHHHHHHHHCCC-ceEEEcCCCC
Q 047339 7 DVVIIGAGIAGLATALALKRLGI-KPLVLEKSDG 39 (115)
Q Consensus 7 ~v~IvG~G~~Gl~~A~~l~~~g~-~v~viE~~~~ 39 (115)
.++|+|+||.||.++..++..|. +|.++|.++.
T Consensus 171 ~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~~ 204 (350)
T COG1063 171 TVVVVGAGPIGLLAIALAKLLGASVVIVVDRSPE 204 (350)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHH
Confidence 59999999999999988888985 6666677654
No 444
>cd05290 LDH_3 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of some bacterial LDHs from firmicutes, gammaproteobacteria, and actinobacteria. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=96.36 E-value=0.0089 Score=40.92 Aligned_cols=32 Identities=28% Similarity=0.479 Sum_probs=28.2
Q ss_pred cEEEECCCHHHHHHHHHHHHCCC--ceEEEcCCC
Q 047339 7 DVVIIGAGIAGLATALALKRLGI--KPLVLEKSD 38 (115)
Q Consensus 7 ~v~IvG~G~~Gl~~A~~l~~~g~--~v~viE~~~ 38 (115)
+|.|||+|..|.++|+.|...++ ++.|+|.+.
T Consensus 1 Ki~IIGaG~VG~~~a~~l~~~~~~~elvL~Di~~ 34 (307)
T cd05290 1 KLVVIGAGHVGSAVLNYALALGLFSEIVLIDVNE 34 (307)
T ss_pred CEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCc
Confidence 58999999999999999998886 688999754
No 445
>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]
Probab=96.34 E-value=0.0061 Score=43.74 Aligned_cols=36 Identities=33% Similarity=0.471 Sum_probs=32.7
Q ss_pred cccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCCC
Q 047339 5 EKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGL 40 (115)
Q Consensus 5 ~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~~ 40 (115)
.++|+|+|-|-+|+++|.+|.+.|++|++.|.++.+
T Consensus 7 ~~kv~V~GLG~sG~a~a~~L~~~G~~v~v~D~~~~~ 42 (448)
T COG0771 7 GKKVLVLGLGKSGLAAARFLLKLGAEVTVSDDRPAP 42 (448)
T ss_pred CCEEEEEecccccHHHHHHHHHCCCeEEEEcCCCCc
Confidence 468999999999999999999999999999966655
No 446
>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional
Probab=96.33 E-value=0.0099 Score=39.38 Aligned_cols=33 Identities=21% Similarity=0.344 Sum_probs=28.9
Q ss_pred cccEEEECCCHHHHHHHHHHHHCCC-ceEEEcCC
Q 047339 5 EKDVVIIGAGIAGLATALALKRLGI-KPLVLEKS 37 (115)
Q Consensus 5 ~~~v~IvG~G~~Gl~~A~~l~~~g~-~v~viE~~ 37 (115)
+.+|+|||+|..|+.+|..|++.|+ +++|+|..
T Consensus 32 ~~~VliiG~GglGs~va~~La~~Gvg~i~lvD~D 65 (245)
T PRK05690 32 AARVLVVGLGGLGCAASQYLAAAGVGTLTLVDFD 65 (245)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCCEEEEEcCC
Confidence 5689999999999999999999997 67777743
No 447
>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB. This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).
Probab=96.33 E-value=0.01 Score=39.22 Aligned_cols=34 Identities=26% Similarity=0.376 Sum_probs=29.2
Q ss_pred cccEEEECCCHHHHHHHHHHHHCCC-ceEEEcCCC
Q 047339 5 EKDVVIIGAGIAGLATALALKRLGI-KPLVLEKSD 38 (115)
Q Consensus 5 ~~~v~IvG~G~~Gl~~A~~l~~~g~-~v~viE~~~ 38 (115)
..+|+|+|+|-.|..+|..|++.|+ +++++|...
T Consensus 24 ~~~VlvvG~GglGs~va~~La~~Gvg~i~lvD~D~ 58 (240)
T TIGR02355 24 ASRVLIVGLGGLGCAASQYLAAAGVGNLTLLDFDT 58 (240)
T ss_pred CCcEEEECcCHHHHHHHHHHHHcCCCEEEEEeCCc
Confidence 4689999999999999999999996 677777544
No 448
>KOG1335 consensus Dihydrolipoamide dehydrogenase [Energy production and conversion]
Probab=96.31 E-value=0.002 Score=45.34 Aligned_cols=59 Identities=29% Similarity=0.379 Sum_probs=47.1
Q ss_pred ccccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCCCCCcceeeeeCccHHHHHHHcCCh
Q 047339 4 VEKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGLRGTGAAINFAPNAWLALDALGVS 63 (115)
Q Consensus 4 ~~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~~~~~~~~~~~~~~~~~~l~~~g~~ 63 (115)
.+.+.+|||+|..||.++.-..+.|.+|+++|-.+...+. .--.++...+++|+.-|+.
T Consensus 210 vPk~~~viG~G~IGLE~gsV~~rLGseVT~VEf~~~i~~~-mD~Eisk~~qr~L~kQgik 268 (506)
T KOG1335|consen 210 VPKKLTVIGAGYIGLEMGSVWSRLGSEVTVVEFLDQIGGV-MDGEISKAFQRVLQKQGIK 268 (506)
T ss_pred CcceEEEEcCceeeeehhhHHHhcCCeEEEEEehhhhccc-cCHHHHHHHHHHHHhcCce
Confidence 4678999999999999999999999999999987776433 3334556677888877754
No 449
>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=96.31 E-value=0.0057 Score=46.34 Aligned_cols=34 Identities=18% Similarity=0.326 Sum_probs=30.6
Q ss_pred ccEEEECCCHHHHHHHHHHH-HCCCceEEEcCCCC
Q 047339 6 KDVVIIGAGIAGLATALALK-RLGIKPLVLEKSDG 39 (115)
Q Consensus 6 ~~v~IvG~G~~Gl~~A~~l~-~~g~~v~viE~~~~ 39 (115)
.+|.|||+|..|...|..++ ..|++|+++|.++.
T Consensus 310 ~~v~ViGaG~mG~giA~~~a~~~G~~V~l~d~~~~ 344 (708)
T PRK11154 310 NKVGVLGGGLMGGGIAYVTATKAGLPVRIKDINPQ 344 (708)
T ss_pred cEEEEECCchhhHHHHHHHHHHcCCeEEEEeCCHH
Confidence 46999999999999999988 88999999997654
No 450
>PLN02602 lactate dehydrogenase
Probab=96.30 E-value=0.012 Score=41.11 Aligned_cols=34 Identities=18% Similarity=0.362 Sum_probs=29.6
Q ss_pred ccEEEECCCHHHHHHHHHHHHCCC--ceEEEcCCCC
Q 047339 6 KDVVIIGAGIAGLATALALKRLGI--KPLVLEKSDG 39 (115)
Q Consensus 6 ~~v~IvG~G~~Gl~~A~~l~~~g~--~v~viE~~~~ 39 (115)
.+|+|||+|-+|.++|+.|...+. .+.|+|.++.
T Consensus 38 ~KI~IIGaG~VG~~~a~~l~~~~l~~el~LiDi~~~ 73 (350)
T PLN02602 38 TKVSVVGVGNVGMAIAQTILTQDLADELALVDVNPD 73 (350)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCCCc
Confidence 599999999999999999998886 5889987553
No 451
>PRK12549 shikimate 5-dehydrogenase; Reviewed
Probab=96.30 E-value=0.0094 Score=40.32 Aligned_cols=34 Identities=38% Similarity=0.495 Sum_probs=30.3
Q ss_pred cccEEEECCCHHHHHHHHHHHHCCC-ceEEEcCCC
Q 047339 5 EKDVVIIGAGIAGLATALALKRLGI-KPLVLEKSD 38 (115)
Q Consensus 5 ~~~v~IvG~G~~Gl~~A~~l~~~g~-~v~viE~~~ 38 (115)
..+++|+|+|-+|.+++..|.+.|+ +++|++|+.
T Consensus 127 ~k~vlIlGaGGaaraia~aL~~~G~~~I~I~nR~~ 161 (284)
T PRK12549 127 LERVVQLGAGGAGAAVAHALLTLGVERLTIFDVDP 161 (284)
T ss_pred CCEEEEECCcHHHHHHHHHHHHcCCCEEEEECCCH
Confidence 3579999999999999999999997 799998864
No 452
>PRK15461 NADH-dependent gamma-hydroxybutyrate dehydrogenase; Provisional
Probab=96.27 E-value=0.0081 Score=40.79 Aligned_cols=33 Identities=24% Similarity=0.326 Sum_probs=30.5
Q ss_pred cEEEECCCHHHHHHHHHHHHCCCceEEEcCCCC
Q 047339 7 DVVIIGAGIAGLATALALKRLGIKPLVLEKSDG 39 (115)
Q Consensus 7 ~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~ 39 (115)
+|.|||.|..|..+|..|.+.|++|.++++++.
T Consensus 3 ~Ig~IGlG~mG~~mA~~l~~~G~~V~v~d~~~~ 35 (296)
T PRK15461 3 AIAFIGLGQMGSPMASNLLKQGHQLQVFDVNPQ 35 (296)
T ss_pred eEEEEeeCHHHHHHHHHHHHCCCeEEEEcCCHH
Confidence 799999999999999999999999999998653
No 453
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=96.26 E-value=0.0084 Score=40.65 Aligned_cols=35 Identities=26% Similarity=0.485 Sum_probs=31.7
Q ss_pred cccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCC
Q 047339 5 EKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDG 39 (115)
Q Consensus 5 ~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~ 39 (115)
..+++|+|.|..|..+|..|+..|.+|.+++++..
T Consensus 151 gk~v~IiG~G~iG~avA~~L~~~G~~V~v~~R~~~ 185 (287)
T TIGR02853 151 GSNVMVLGFGRTGMTIARTFSALGARVFVGARSSA 185 (287)
T ss_pred CCEEEEEcChHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence 46799999999999999999999999999998753
No 454
>TIGR03736 PRTRC_ThiF PRTRC system ThiF family protein. A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. This family is the PRTRC system ThiF family protein.
Probab=96.26 E-value=0.011 Score=39.21 Aligned_cols=36 Identities=28% Similarity=0.393 Sum_probs=29.9
Q ss_pred CccccEEEECCCHHHHHHHHHHHHCC-----------CceEEEcCCC
Q 047339 3 TVEKDVVIIGAGIAGLATALALKRLG-----------IKPLVLEKSD 38 (115)
Q Consensus 3 ~~~~~v~IvG~G~~Gl~~A~~l~~~g-----------~~v~viE~~~ 38 (115)
+.+.+|+|||+|-.|+.++..|++.| .+++|+|...
T Consensus 9 ~~~~~V~vvG~GGlGs~v~~~Lar~G~a~~~~G~~~g~~i~lvD~D~ 55 (244)
T TIGR03736 9 SRPVSVVLVGAGGTGSQVIAGLARLHHALKALGHPGGLAVTVYDDDT 55 (244)
T ss_pred hCCCeEEEEcCChHHHHHHHHHHHccccccccCCCCCCEEEEECCCE
Confidence 35689999999999999999999964 3788888543
No 455
>TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating). This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle.
Probab=96.25 E-value=0.0078 Score=40.90 Aligned_cols=33 Identities=18% Similarity=0.265 Sum_probs=30.5
Q ss_pred cEEEECCCHHHHHHHHHHHHCCCceEEEcCCCC
Q 047339 7 DVVIIGAGIAGLATALALKRLGIKPLVLEKSDG 39 (115)
Q Consensus 7 ~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~ 39 (115)
+|.|||.|..|..+|..|.+.|++|.++++++.
T Consensus 2 ~Ig~IGlG~mG~~la~~L~~~g~~V~~~dr~~~ 34 (298)
T TIGR00872 2 QLGLIGLGRMGANIVRRLAKRGHDCVGYDHDQD 34 (298)
T ss_pred EEEEEcchHHHHHHHHHHHHCCCEEEEEECCHH
Confidence 699999999999999999999999999998753
No 456
>KOG2755 consensus Oxidoreductase [General function prediction only]
Probab=96.24 E-value=0.0032 Score=42.21 Aligned_cols=34 Identities=29% Similarity=0.521 Sum_probs=27.9
Q ss_pred cEEEECCCHHHHHHHHHHHHC--CCceEEEcCCCCC
Q 047339 7 DVVIIGAGIAGLATALALKRL--GIKPLVLEKSDGL 40 (115)
Q Consensus 7 ~v~IvG~G~~Gl~~A~~l~~~--g~~v~viE~~~~~ 40 (115)
+.+|||||++|.+.|..|++. ..+++++-.++..
T Consensus 1 kfivvgggiagvscaeqla~~~psa~illitass~v 36 (334)
T KOG2755|consen 1 KFIVVGGGIAGVSCAEQLAQLEPSAEILLITASSFV 36 (334)
T ss_pred CeEEEcCccccccHHHHHHhhCCCCcEEEEeccHHH
Confidence 468999999999999999884 5788888766543
No 457
>PLN02240 UDP-glucose 4-epimerase
Probab=96.24 E-value=0.013 Score=40.18 Aligned_cols=36 Identities=28% Similarity=0.498 Sum_probs=31.7
Q ss_pred CCCccccEEEECC-CHHHHHHHHHHHHCCCceEEEcC
Q 047339 1 METVEKDVVIIGA-GIAGLATALALKRLGIKPLVLEK 36 (115)
Q Consensus 1 m~~~~~~v~IvG~-G~~Gl~~A~~l~~~g~~v~viE~ 36 (115)
|+.+...|+|.|| |..|..++..|.++|++|+++++
T Consensus 1 ~~~~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~~ 37 (352)
T PLN02240 1 MSLMGRTILVTGGAGYIGSHTVLQLLLAGYKVVVIDN 37 (352)
T ss_pred CCCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeC
Confidence 5566678999987 99999999999999999999875
No 458
>TIGR03376 glycerol3P_DH glycerol-3-phosphate dehydrogenase (NAD(+)). Members of this protein family are the eukaryotic enzyme, glycerol-3-phosphate dehydrogenase (NAD(+)) (EC 1.1.1.8). Enzymatic activity for 1.1.1.8 is defined as sn-glycerol 3-phosphate + NAD(+) = glycerone phosphate + NADH. Note the very similar reactions of enzymes defined as EC 1.1.1.94 and 1.1.99.5, assigned to families of proteins in the bacteria.
Probab=96.23 E-value=0.0093 Score=41.44 Aligned_cols=30 Identities=20% Similarity=0.139 Sum_probs=28.2
Q ss_pred cEEEECCCHHHHHHHHHHHHCC--------CceEEEcC
Q 047339 7 DVVIIGAGIAGLATALALKRLG--------IKPLVLEK 36 (115)
Q Consensus 7 ~v~IvG~G~~Gl~~A~~l~~~g--------~~v~viE~ 36 (115)
+|.|||+|.-|.++|..|+++| ++|.++.+
T Consensus 1 kI~VIGaG~wGtALA~~la~ng~~~~~~~~~~V~lw~~ 38 (342)
T TIGR03376 1 RVAVVGSGNWGTAIAKIVAENARALPELFEESVRMWVF 38 (342)
T ss_pred CEEEECcCHHHHHHHHHHHHcCCcccccCCceEEEEEe
Confidence 5899999999999999999999 99999976
No 459
>KOG2304 consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid transport and metabolism]
Probab=96.23 E-value=0.0067 Score=39.88 Aligned_cols=36 Identities=25% Similarity=0.407 Sum_probs=32.9
Q ss_pred cccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCCC
Q 047339 5 EKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGL 40 (115)
Q Consensus 5 ~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~~ 40 (115)
...|.|||+|..|.-.|...+..|++|.+++++...
T Consensus 11 ~~~V~ivGaG~MGSGIAQv~a~sg~~V~l~d~~~~a 46 (298)
T KOG2304|consen 11 IKNVAIVGAGQMGSGIAQVAATSGLNVWLVDANEDA 46 (298)
T ss_pred ccceEEEcccccchhHHHHHHhcCCceEEecCCHHH
Confidence 468999999999999999999999999999988753
No 460
>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional
Probab=96.22 E-value=0.0091 Score=41.93 Aligned_cols=33 Identities=36% Similarity=0.474 Sum_probs=30.5
Q ss_pred ccEEEEC-CCHHHHHHHHHHHHCCCceEEEcCCC
Q 047339 6 KDVVIIG-AGIAGLATALALKRLGIKPLVLEKSD 38 (115)
Q Consensus 6 ~~v~IvG-~G~~Gl~~A~~l~~~g~~v~viE~~~ 38 (115)
.+|+||| .|..|..+|..|.++|++|.++++.+
T Consensus 99 ~~I~IiGG~GlmG~slA~~l~~~G~~V~~~d~~~ 132 (374)
T PRK11199 99 RPVVIVGGKGQLGRLFAKMLTLSGYQVRILEQDD 132 (374)
T ss_pred ceEEEEcCCChhhHHHHHHHHHCCCeEEEeCCCc
Confidence 6799999 89999999999999999999999764
No 461
>TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog.
Probab=96.22 E-value=0.0075 Score=45.63 Aligned_cols=34 Identities=26% Similarity=0.349 Sum_probs=30.2
Q ss_pred ccEEEECCCHHHHHHHHHHH-HCCCceEEEcCCCC
Q 047339 6 KDVVIIGAGIAGLATALALK-RLGIKPLVLEKSDG 39 (115)
Q Consensus 6 ~~v~IvG~G~~Gl~~A~~l~-~~g~~v~viE~~~~ 39 (115)
.+|.|||+|..|...|..++ +.|++|+++|.++.
T Consensus 305 ~~v~ViGaG~mG~~iA~~~a~~~G~~V~l~d~~~~ 339 (699)
T TIGR02440 305 KKVGILGGGLMGGGIASVTATKAGIPVRIKDINPQ 339 (699)
T ss_pred cEEEEECCcHHHHHHHHHHHHHcCCeEEEEeCCHH
Confidence 46999999999999999888 58999999997754
No 462
>PRK08328 hypothetical protein; Provisional
Probab=96.21 E-value=0.013 Score=38.41 Aligned_cols=34 Identities=24% Similarity=0.471 Sum_probs=29.3
Q ss_pred cccEEEECCCHHHHHHHHHHHHCCC-ceEEEcCCC
Q 047339 5 EKDVVIIGAGIAGLATALALKRLGI-KPLVLEKSD 38 (115)
Q Consensus 5 ~~~v~IvG~G~~Gl~~A~~l~~~g~-~v~viE~~~ 38 (115)
+.+|+|||+|-.|+.+|..|++.|+ +++|+|...
T Consensus 27 ~~~VlIiG~GGlGs~ia~~La~~Gvg~i~lvD~D~ 61 (231)
T PRK08328 27 KAKVAVVGVGGLGSPVAYYLAAAGVGRILLIDEQT 61 (231)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCc
Confidence 4689999999999999999999997 577887543
No 463
>PRK02006 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=96.20 E-value=0.011 Score=42.99 Aligned_cols=33 Identities=30% Similarity=0.398 Sum_probs=30.2
Q ss_pred ccEEEECCCHHHHHHHHHHHHCCCceEEEcCCC
Q 047339 6 KDVVIIGAGIAGLATALALKRLGIKPLVLEKSD 38 (115)
Q Consensus 6 ~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~ 38 (115)
.+|.|+|.|-+|+++|.+|.+.|++|.+.|...
T Consensus 8 ~~i~v~G~G~sG~s~a~~L~~~G~~v~~~D~~~ 40 (498)
T PRK02006 8 PMVLVLGLGESGLAMARWCARHGARLRVADTRE 40 (498)
T ss_pred CEEEEEeecHhHHHHHHHHHHCCCEEEEEcCCC
Confidence 469999999999999999999999999999654
No 464
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=96.20 E-value=0.0084 Score=43.74 Aligned_cols=34 Identities=35% Similarity=0.500 Sum_probs=30.8
Q ss_pred cccEEEECCCHHHHHHHHHHHHCCCceEEEcCCC
Q 047339 5 EKDVVIIGAGIAGLATALALKRLGIKPLVLEKSD 38 (115)
Q Consensus 5 ~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~ 38 (115)
..+++|+|+|+.|+.++..+...|..|.++|.+.
T Consensus 164 ~akVlViGaG~iGl~Aa~~ak~lGA~V~v~d~~~ 197 (511)
T TIGR00561 164 PAKVLVIGAGVAGLAAIGAANSLGAIVRAFDTRP 197 (511)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCH
Confidence 4689999999999999999999999999998765
No 465
>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).
Probab=96.20 E-value=0.013 Score=38.27 Aligned_cols=33 Identities=27% Similarity=0.401 Sum_probs=28.7
Q ss_pred cccEEEECCCHHHHHHHHHHHHCCC-ceEEEcCC
Q 047339 5 EKDVVIIGAGIAGLATALALKRLGI-KPLVLEKS 37 (115)
Q Consensus 5 ~~~v~IvG~G~~Gl~~A~~l~~~g~-~v~viE~~ 37 (115)
+.+|+|||+|..|..+|..|++.|+ +++|+|..
T Consensus 21 ~~~VlivG~GglGs~va~~La~~Gvg~i~lvD~D 54 (228)
T cd00757 21 NARVLVVGAGGLGSPAAEYLAAAGVGKLGLVDDD 54 (228)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCC
Confidence 4689999999999999999999997 67777643
No 466
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=96.20 E-value=0.011 Score=42.30 Aligned_cols=35 Identities=34% Similarity=0.374 Sum_probs=31.3
Q ss_pred cccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCC
Q 047339 5 EKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDG 39 (115)
Q Consensus 5 ~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~ 39 (115)
...++|+|.|..|..+|..|+..|.+|.++|.++.
T Consensus 212 Gk~VlViG~G~IG~~vA~~lr~~Ga~ViV~d~dp~ 246 (425)
T PRK05476 212 GKVVVVAGYGDVGKGCAQRLRGLGARVIVTEVDPI 246 (425)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCCch
Confidence 35799999999999999999999999999997653
No 467
>PRK04690 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=96.19 E-value=0.0094 Score=43.01 Aligned_cols=34 Identities=21% Similarity=0.108 Sum_probs=30.8
Q ss_pred cccEEEECCCHHHHHHHHHHHHCCCceEEEcCCC
Q 047339 5 EKDVVIIGAGIAGLATALALKRLGIKPLVLEKSD 38 (115)
Q Consensus 5 ~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~ 38 (115)
..+|+|+|.|-+|..+|.+|.+.|.+|++.|.++
T Consensus 8 ~~~v~v~G~G~sG~~~~~~l~~~g~~v~~~d~~~ 41 (468)
T PRK04690 8 GRRVALWGWGREGRAAYRALRAHLPAQALTLFCN 41 (468)
T ss_pred CCEEEEEccchhhHHHHHHHHHcCCEEEEEcCCC
Confidence 3579999999999999999999999999999643
No 468
>PRK05653 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated
Probab=96.17 E-value=0.015 Score=37.60 Aligned_cols=39 Identities=28% Similarity=0.342 Sum_probs=32.2
Q ss_pred CCCccccEEEECC-CHHHHHHHHHHHHCCCceEEEcCCCC
Q 047339 1 METVEKDVVIIGA-GIAGLATALALKRLGIKPLVLEKSDG 39 (115)
Q Consensus 1 m~~~~~~v~IvG~-G~~Gl~~A~~l~~~g~~v~viE~~~~ 39 (115)
|+.+...++|.|+ |..|..++..|.++|++|.++.+++.
T Consensus 1 ~~~~~~~ilItGasg~iG~~l~~~l~~~g~~v~~~~r~~~ 40 (246)
T PRK05653 1 MSLQGKTALVTGASRGIGRAIALRLAADGAKVVIYDSNEE 40 (246)
T ss_pred CCCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCChh
Confidence 5444467999996 78899999999999999999988754
No 469
>TIGR03467 HpnE squalene-associated FAD-dependent desaturase. The sequences in this family are members of the pfam01593 superfamily of flavin-containing amine oxidases which include the phytoene desaturases. These sequences also include a FAD-dependent oxidoreductase domain, pfam01266. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of squalene, the condensation product of the polyisoprenoid farnesyl pyrophosphate. This gene and its association with hopene biosynthesis in Zymomonas mobilis has been noted in the literature where the gene symbol hpnE was assigned. This gene is also found in contexts where the downstream conversion of squalene to hopenes is not evidence. The precise nature of the reaction catalyzed by this enzyme is unknown at this time.
Probab=96.16 E-value=0.01 Score=41.49 Aligned_cols=48 Identities=23% Similarity=0.340 Sum_probs=35.3
Q ss_pred HHHHHHHHCCCceEEEcCCCCCCCcceee-----------------eeCccHHHHHHHcCChHHH
Q 047339 19 ATALALKRLGIKPLVLEKSDGLRGTGAAI-----------------NFAPNAWLALDALGVSHKL 66 (115)
Q Consensus 19 ~~A~~l~~~g~~v~viE~~~~~~~~~~~~-----------------~~~~~~~~~l~~~g~~~~i 66 (115)
++|+.|+++|++|+|+|+.+.+++...+. ...++..++++++|+....
T Consensus 1 ~AA~~L~~~G~~v~vlEa~~~~GG~~~t~~~~g~~~~~d~G~~~~~~~~~~~~~l~~~lgl~~~~ 65 (419)
T TIGR03467 1 SAAVELARAGARVTLFEARPRLGGRARSFEDGGLGQTIDNGQHVLLGAYTNLLALLRRIGAEPRL 65 (419)
T ss_pred ChHHHHHhCCCceEEEecCCCCCCceeEeecCCCCcceecCCEEEEcccHHHHHHHHHhCCchhh
Confidence 47899999999999999999876543221 1235567888888887553
No 470
>PRK01368 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=96.15 E-value=0.011 Score=42.49 Aligned_cols=32 Identities=16% Similarity=0.346 Sum_probs=28.7
Q ss_pred cccEEEECCCHHHHHHHHHHHHCCCceEEEcCC
Q 047339 5 EKDVVIIGAGIAGLATALALKRLGIKPLVLEKS 37 (115)
Q Consensus 5 ~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~ 37 (115)
..+|+|+|.|.+|..+|.+|.+ |.+|++.|.+
T Consensus 6 ~~~v~v~G~G~sG~a~~~~L~~-g~~v~v~D~~ 37 (454)
T PRK01368 6 KQKIGVFGLGKTGISVYEELQN-KYDVIVYDDL 37 (454)
T ss_pred CCEEEEEeecHHHHHHHHHHhC-CCEEEEECCC
Confidence 3579999999999999999995 9999999954
No 471
>PRK05562 precorrin-2 dehydrogenase; Provisional
Probab=96.15 E-value=0.012 Score=38.57 Aligned_cols=32 Identities=28% Similarity=0.420 Sum_probs=29.0
Q ss_pred cccEEEECCCHHHHHHHHHHHHCCCceEEEcC
Q 047339 5 EKDVVIIGAGIAGLATALALKRLGIKPLVLEK 36 (115)
Q Consensus 5 ~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~ 36 (115)
...|+|||||.+++-=+..|.+.|.+|+|+..
T Consensus 25 ~~~VLVVGGG~VA~RK~~~Ll~~gA~VtVVap 56 (223)
T PRK05562 25 KIKVLIIGGGKAAFIKGKTFLKKGCYVYILSK 56 (223)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCEEEEEcC
Confidence 45799999999999999999999999999954
No 472
>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]
Probab=96.14 E-value=0.006 Score=41.78 Aligned_cols=34 Identities=26% Similarity=0.413 Sum_probs=31.6
Q ss_pred cccEEEECCCHHHHHHHHHHHHCCCceEEEcCCC
Q 047339 5 EKDVVIIGAGIAGLATALALKRLGIKPLVLEKSD 38 (115)
Q Consensus 5 ~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~ 38 (115)
+-+|+|+|||.+|.-+|..+...|.+|+++|.+.
T Consensus 168 ~~kv~iiGGGvvgtnaAkiA~glgA~Vtild~n~ 201 (371)
T COG0686 168 PAKVVVLGGGVVGTNAAKIAIGLGADVTILDLNI 201 (371)
T ss_pred CccEEEECCccccchHHHHHhccCCeeEEEecCH
Confidence 4689999999999999999999999999999884
No 473
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=96.13 E-value=0.01 Score=46.41 Aligned_cols=33 Identities=30% Similarity=0.482 Sum_probs=30.3
Q ss_pred ccEEEECCCHHHHHHHHHHHHCCCceEEEcCCC
Q 047339 6 KDVVIIGAGIAGLATALALKRLGIKPLVLEKSD 38 (115)
Q Consensus 6 ~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~ 38 (115)
.+|+|||||.+|+.+|..+.+.|.+|+++.+..
T Consensus 448 k~VvVIGGG~tA~D~A~ta~R~Ga~Vtlv~rr~ 480 (944)
T PRK12779 448 KEVFVIGGGNTAMDAARTAKRLGGNVTIVYRRT 480 (944)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCEEEEEEecC
Confidence 579999999999999999999999999998764
No 474
>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase. Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo
Probab=96.13 E-value=0.015 Score=36.94 Aligned_cols=34 Identities=26% Similarity=0.462 Sum_probs=29.9
Q ss_pred cccEEEECC-CHHHHHHHHHHHHCCCceEEEcCCC
Q 047339 5 EKDVVIIGA-GIAGLATALALKRLGIKPLVLEKSD 38 (115)
Q Consensus 5 ~~~v~IvG~-G~~Gl~~A~~l~~~g~~v~viE~~~ 38 (115)
..+++|+|| |..|..++..|.+.|.+|.++.|+.
T Consensus 28 ~~~vlVlGgtG~iG~~~a~~l~~~g~~V~l~~R~~ 62 (194)
T cd01078 28 GKTAVVLGGTGPVGQRAAVLLAREGARVVLVGRDL 62 (194)
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCCCEEEEEcCCH
Confidence 367999997 9999999999999999999998763
No 475
>PLN02695 GDP-D-mannose-3',5'-epimerase
Probab=96.10 E-value=0.015 Score=40.66 Aligned_cols=34 Identities=24% Similarity=0.192 Sum_probs=30.8
Q ss_pred ccccEEEECC-CHHHHHHHHHHHHCCCceEEEcCC
Q 047339 4 VEKDVVIIGA-GIAGLATALALKRLGIKPLVLEKS 37 (115)
Q Consensus 4 ~~~~v~IvG~-G~~Gl~~A~~l~~~g~~v~viE~~ 37 (115)
.+++|+|.|| |..|..++..|.++|++|+.+++.
T Consensus 20 ~~~~IlVtGgtGfIG~~l~~~L~~~G~~V~~v~r~ 54 (370)
T PLN02695 20 EKLRICITGAGGFIASHIARRLKAEGHYIIASDWK 54 (370)
T ss_pred CCCEEEEECCccHHHHHHHHHHHhCCCEEEEEEec
Confidence 4578999998 999999999999999999999864
No 476
>PTZ00345 glycerol-3-phosphate dehydrogenase; Provisional
Probab=96.10 E-value=0.013 Score=41.06 Aligned_cols=35 Identities=17% Similarity=0.073 Sum_probs=30.7
Q ss_pred cccEEEECCCHHHHHHHHHHHHCC-------CceEEEcCCCC
Q 047339 5 EKDVVIIGAGIAGLATALALKRLG-------IKPLVLEKSDG 39 (115)
Q Consensus 5 ~~~v~IvG~G~~Gl~~A~~l~~~g-------~~v~viE~~~~ 39 (115)
+.+|.|||+|.-|.++|..|++++ ++|.++.+++.
T Consensus 11 ~~ki~ViGaG~wGtAlA~~l~~n~~~~~~~~~~V~lw~~~~~ 52 (365)
T PTZ00345 11 PLKVSVIGSGNWGSAISKVVGENTQRNYIFHNEVRMWVLEEI 52 (365)
T ss_pred CCeEEEECCCHHHHHHHHHHHhcCCcccCCCCeEEEEEeccc
Confidence 458999999999999999999987 79999877653
No 477
>cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph
Probab=96.09 E-value=0.015 Score=38.07 Aligned_cols=34 Identities=41% Similarity=0.530 Sum_probs=30.3
Q ss_pred cccEEEECCCHHHHHHHHHHHHCCCc---eEEEcCCC
Q 047339 5 EKDVVIIGAGIAGLATALALKRLGIK---PLVLEKSD 38 (115)
Q Consensus 5 ~~~v~IvG~G~~Gl~~A~~l~~~g~~---v~viE~~~ 38 (115)
..+++|+|+|-+|...|..|.+.|.+ +.|++++.
T Consensus 25 ~~rvlvlGAGgAg~aiA~~L~~~G~~~~~i~ivdr~g 61 (226)
T cd05311 25 EVKIVINGAGAAGIAIARLLLAAGAKPENIVVVDSKG 61 (226)
T ss_pred CCEEEEECchHHHHHHHHHHHHcCcCcceEEEEeCCC
Confidence 45899999999999999999999975 99999873
No 478
>PRK12439 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=96.09 E-value=0.012 Score=40.76 Aligned_cols=31 Identities=32% Similarity=0.408 Sum_probs=27.0
Q ss_pred ccEEEECCCHHHHHHHHHHHHCCCceEEEcCC
Q 047339 6 KDVVIIGAGIAGLATALALKRLGIKPLVLEKS 37 (115)
Q Consensus 6 ~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~ 37 (115)
.+|.|+|+|..|.++|..|++.| .+.++.++
T Consensus 8 mkI~IiGaGa~G~alA~~La~~g-~v~l~~~~ 38 (341)
T PRK12439 8 PKVVVLGGGSWGTTVASICARRG-PTLQWVRS 38 (341)
T ss_pred CeEEEECCCHHHHHHHHHHHHCC-CEEEEeCC
Confidence 57999999999999999999999 67777653
No 479
>COG0240 GpsA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=96.09 E-value=0.011 Score=40.76 Aligned_cols=33 Identities=30% Similarity=0.400 Sum_probs=30.4
Q ss_pred ccEEEECCCHHHHHHHHHHHHCCCceEEEcCCC
Q 047339 6 KDVVIIGAGIAGLATALALKRLGIKPLVLEKSD 38 (115)
Q Consensus 6 ~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~ 38 (115)
.+|.|+|+|.=|.++|..|+++|++|.++-+++
T Consensus 2 ~kI~ViGaGswGTALA~~la~ng~~V~lw~r~~ 34 (329)
T COG0240 2 MKIAVIGAGSWGTALAKVLARNGHEVRLWGRDE 34 (329)
T ss_pred ceEEEEcCChHHHHHHHHHHhcCCeeEEEecCH
Confidence 579999999999999999999999999998753
No 480
>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3.3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....
Probab=96.09 E-value=0.011 Score=36.70 Aligned_cols=33 Identities=42% Similarity=0.519 Sum_probs=27.1
Q ss_pred ccEEEECCCHHHHHHHHHHHHCCCceEEEcCCC
Q 047339 6 KDVVIIGAGIAGLATALALKRLGIKPLVLEKSD 38 (115)
Q Consensus 6 ~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~ 38 (115)
+.++|+|-|..|-..|..|+..|.+|+|.|.++
T Consensus 24 k~vvV~GYG~vG~g~A~~lr~~Ga~V~V~e~DP 56 (162)
T PF00670_consen 24 KRVVVIGYGKVGKGIARALRGLGARVTVTEIDP 56 (162)
T ss_dssp SEEEEE--SHHHHHHHHHHHHTT-EEEEE-SSH
T ss_pred CEEEEeCCCcccHHHHHHHhhCCCEEEEEECCh
Confidence 579999999999999999999999999999876
No 481
>PRK07326 short chain dehydrogenase; Provisional
Probab=96.07 E-value=0.015 Score=37.59 Aligned_cols=34 Identities=29% Similarity=0.280 Sum_probs=29.3
Q ss_pred cccEEEECC-CHHHHHHHHHHHHCCCceEEEcCCC
Q 047339 5 EKDVVIIGA-GIAGLATALALKRLGIKPLVLEKSD 38 (115)
Q Consensus 5 ~~~v~IvG~-G~~Gl~~A~~l~~~g~~v~viE~~~ 38 (115)
...++|+|| |..|..++..|.++|++|.++.+++
T Consensus 6 ~~~ilItGatg~iG~~la~~l~~~g~~V~~~~r~~ 40 (237)
T PRK07326 6 GKVALITGGSKGIGFAIAEALLAEGYKVAITARDQ 40 (237)
T ss_pred CCEEEEECCCCcHHHHHHHHHHHCCCEEEEeeCCH
Confidence 467889885 8889999999999999999998764
No 482
>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]
Probab=96.07 E-value=0.016 Score=39.19 Aligned_cols=35 Identities=29% Similarity=0.417 Sum_probs=31.2
Q ss_pred cccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCC
Q 047339 5 EKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDG 39 (115)
Q Consensus 5 ~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~ 39 (115)
...|+|+|.|..|-.+|..++++|+.+.++.+...
T Consensus 3 ~~~v~IvG~GliG~s~a~~l~~~g~~v~i~g~d~~ 37 (279)
T COG0287 3 SMKVGIVGLGLMGGSLARALKEAGLVVRIIGRDRS 37 (279)
T ss_pred CcEEEEECCchHHHHHHHHHHHcCCeEEEEeecCc
Confidence 46899999999999999999999999988876554
No 483
>PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=96.06 E-value=0.013 Score=42.35 Aligned_cols=32 Identities=31% Similarity=0.537 Sum_probs=29.7
Q ss_pred ccEEEECCCHHHHHHHHHHHHCCCceEEEcCC
Q 047339 6 KDVVIIGAGIAGLATALALKRLGIKPLVLEKS 37 (115)
Q Consensus 6 ~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~ 37 (115)
.+|+|+|.|-+|+++|.+|.+.|+.|.+.|+.
T Consensus 16 ~~v~v~G~G~sG~a~a~~L~~~G~~V~~~D~~ 47 (473)
T PRK00141 16 GRVLVAGAGVSGRGIAAMLSELGCDVVVADDN 47 (473)
T ss_pred CeEEEEccCHHHHHHHHHHHHCCCEEEEECCC
Confidence 56999999999999999999999999999964
No 484
>COG2509 Uncharacterized FAD-dependent dehydrogenases [General function prediction only]
Probab=96.04 E-value=0.0086 Score=42.87 Aligned_cols=35 Identities=40% Similarity=0.419 Sum_probs=29.9
Q ss_pred ccccEEEECCCHHHHHHHHHHHHC-----CCceEEEcCCC
Q 047339 4 VEKDVVIIGAGIAGLATALALKRL-----GIKPLVLEKSD 38 (115)
Q Consensus 4 ~~~~v~IvG~G~~Gl~~A~~l~~~-----g~~v~viE~~~ 38 (115)
+.+|++|||+|++|+.+|+.++.. ...+.++|+..
T Consensus 17 ~~~~vvivgag~~g~f~a~~~s~~ar~~~~~~i~~vd~g~ 56 (486)
T COG2509 17 AALDVVIVGAGPAGLFAAYELSGDARKVPILKIYVVDVGL 56 (486)
T ss_pred hccceEEECCCchHHHHHHHHhhhcccCCceEEEEEEecc
Confidence 568999999999999999998863 57889998654
No 485
>COG1250 FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabolism]
Probab=96.04 E-value=0.013 Score=40.10 Aligned_cols=35 Identities=29% Similarity=0.399 Sum_probs=31.4
Q ss_pred cccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCC
Q 047339 5 EKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDG 39 (115)
Q Consensus 5 ~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~ 39 (115)
-.+|.|||+|..|.--|..++..|++|+++|.++.
T Consensus 3 i~kv~ViGaG~MG~gIA~~~A~~G~~V~l~D~~~~ 37 (307)
T COG1250 3 IKKVAVIGAGVMGAGIAAVFALAGYDVVLKDISPE 37 (307)
T ss_pred ccEEEEEcccchhHHHHHHHhhcCCceEEEeCCHH
Confidence 36799999999999999999998899999998753
No 486
>KOG1336 consensus Monodehydroascorbate/ferredoxin reductase [General function prediction only]
Probab=96.03 E-value=0.012 Score=42.34 Aligned_cols=59 Identities=20% Similarity=0.081 Sum_probs=45.8
Q ss_pred cccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCCCCCcceeeeeCccHHHHHHHcCCh
Q 047339 5 EKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGLRGTGAAINFAPNAWLALDALGVS 63 (115)
Q Consensus 5 ~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~~~~~~~~~~~~~~~~~~l~~~g~~ 63 (115)
...|+++|+|..|+.+|..|...+.+|++++..+.+-..-.+..+...-..+++.-|+.
T Consensus 213 ~~~vV~vG~G~ig~Evaa~l~~~~~~VT~V~~e~~~~~~lf~~~i~~~~~~y~e~kgVk 271 (478)
T KOG1336|consen 213 GGKVVCVGGGFIGMEVAAALVSKAKSVTVVFPEPWLLPRLFGPSIGQFYEDYYENKGVK 271 (478)
T ss_pred CceEEEECchHHHHHHHHHHHhcCceEEEEccCccchhhhhhHHHHHHHHHHHHhcCeE
Confidence 35699999999999999999999999999998887654444444545555666666654
No 487
>PLN02256 arogenate dehydrogenase
Probab=96.03 E-value=0.017 Score=39.53 Aligned_cols=34 Identities=26% Similarity=0.308 Sum_probs=30.5
Q ss_pred cccEEEECCCHHHHHHHHHHHHCCCceEEEcCCC
Q 047339 5 EKDVVIIGAGIAGLATALALKRLGIKPLVLEKSD 38 (115)
Q Consensus 5 ~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~ 38 (115)
..+|.|||.|..|-.+|..|.+.|++|.++++++
T Consensus 36 ~~kI~IIG~G~mG~slA~~L~~~G~~V~~~d~~~ 69 (304)
T PLN02256 36 KLKIGIVGFGNFGQFLAKTFVKQGHTVLATSRSD 69 (304)
T ss_pred CCEEEEEeeCHHHHHHHHHHHhCCCEEEEEECcc
Confidence 4589999999999999999999999999998764
No 488
>PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins. This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A.
Probab=96.02 E-value=0.0039 Score=37.22 Aligned_cols=31 Identities=39% Similarity=0.403 Sum_probs=26.9
Q ss_pred cccEEEECCCHHHHHHHHHHHHCCCceEEEc
Q 047339 5 EKDVVIIGAGIAGLATALALKRLGIKPLVLE 35 (115)
Q Consensus 5 ~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE 35 (115)
..+|.|||+|-+|..+|..|.+.|+.|.-+.
T Consensus 10 ~l~I~iIGaGrVG~~La~aL~~ag~~v~~v~ 40 (127)
T PF10727_consen 10 RLKIGIIGAGRVGTALARALARAGHEVVGVY 40 (127)
T ss_dssp --EEEEECTSCCCCHHHHHHHHTTSEEEEES
T ss_pred ccEEEEECCCHHHHHHHHHHHHCCCeEEEEE
Confidence 5789999999999999999999999987664
No 489
>PRK08217 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=96.01 E-value=0.019 Score=37.38 Aligned_cols=38 Identities=29% Similarity=0.321 Sum_probs=31.7
Q ss_pred CCCccccEEEECC-CHHHHHHHHHHHHCCCceEEEcCCC
Q 047339 1 METVEKDVVIIGA-GIAGLATALALKRLGIKPLVLEKSD 38 (115)
Q Consensus 1 m~~~~~~v~IvG~-G~~Gl~~A~~l~~~g~~v~viE~~~ 38 (115)
|+.....++|+|+ |..|..+|..|.++|++|.+++++.
T Consensus 1 ~~~~~~~~lItG~~g~iG~~~a~~l~~~G~~vi~~~r~~ 39 (253)
T PRK08217 1 MDLKDKVIVITGGAQGLGRAMAEYLAQKGAKLALIDLNQ 39 (253)
T ss_pred CCCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCH
Confidence 4334467899998 9999999999999999999988764
No 490
>cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1. Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain.
Probab=95.99 E-value=0.017 Score=37.04 Aligned_cols=34 Identities=24% Similarity=0.294 Sum_probs=29.7
Q ss_pred cccEEEECCCHHHHHHHHHHHHCCC-ceEEEcCCC
Q 047339 5 EKDVVIIGAGIAGLATALALKRLGI-KPLVLEKSD 38 (115)
Q Consensus 5 ~~~v~IvG~G~~Gl~~A~~l~~~g~-~v~viE~~~ 38 (115)
..+|+|||+|..|+..|..|++.|+ +++++|...
T Consensus 21 ~s~VlIiG~gglG~evak~La~~GVg~i~lvD~d~ 55 (197)
T cd01492 21 SARILLIGLKGLGAEIAKNLVLSGIGSLTILDDRT 55 (197)
T ss_pred hCcEEEEcCCHHHHHHHHHHHHcCCCEEEEEECCc
Confidence 4689999999999999999999998 588887553
No 491
>COG3486 IucD Lysine/ornithine N-monooxygenase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=95.98 E-value=0.013 Score=41.41 Aligned_cols=40 Identities=30% Similarity=0.370 Sum_probs=35.3
Q ss_pred CCCccccEEEECCCHHHHHHHHHHHHCC-CceEEEcCCCCC
Q 047339 1 METVEKDVVIIGAGIAGLATALALKRLG-IKPLVLEKSDGL 40 (115)
Q Consensus 1 m~~~~~~v~IvG~G~~Gl~~A~~l~~~g-~~v~viE~~~~~ 40 (115)
|.+...|++.||-||.-|.+|..|...+ .+++.+||++..
T Consensus 1 ~~~~~~DliGIG~GPfNL~LA~ll~e~~~~~~lFLerkp~F 41 (436)
T COG3486 1 MMAEVLDLIGIGIGPFNLSLAALLEEHSGLKSLFLERKPDF 41 (436)
T ss_pred CCCcceeeEEEccCchHHHHHHHhccccCcceEEEecCCCC
Confidence 4466799999999999999999999976 789999998875
No 492
>PRK05442 malate dehydrogenase; Provisional
Probab=95.98 E-value=0.017 Score=39.88 Aligned_cols=35 Identities=20% Similarity=0.235 Sum_probs=29.5
Q ss_pred ccccEEEECC-CHHHHHHHHHHHHCCC-------ceEEEcCCC
Q 047339 4 VEKDVVIIGA-GIAGLATALALKRLGI-------KPLVLEKSD 38 (115)
Q Consensus 4 ~~~~v~IvG~-G~~Gl~~A~~l~~~g~-------~v~viE~~~ 38 (115)
.+.+|.|||+ |..|.++|+.|...++ ++.|+|.++
T Consensus 3 ~~~KV~IiGaaG~VG~~~a~~l~~~~~~~~~~~~el~LiDi~~ 45 (326)
T PRK05442 3 APVRVAVTGAAGQIGYSLLFRIASGDMLGKDQPVILQLLEIPP 45 (326)
T ss_pred CCcEEEEECCCcHHHHHHHHHHHhhhhcCCCCccEEEEEecCC
Confidence 4579999998 9999999999988764 688998754
No 493
>KOG1439 consensus RAB proteins geranylgeranyltransferase component A (RAB escort protein) [Posttranslational modification, protein turnover, chaperones]
Probab=95.98 E-value=0.0044 Score=43.64 Aligned_cols=45 Identities=29% Similarity=0.424 Sum_probs=38.7
Q ss_pred ccccEEEECCCHHHHHHHHHHHHCCCceEEEcCCCCCCCcceeee
Q 047339 4 VEKDVVIIGAGIAGLATALALKRLGIKPLVLEKSDGLRGTGAAIN 48 (115)
Q Consensus 4 ~~~~v~IvG~G~~Gl~~A~~l~~~g~~v~viE~~~~~~~~~~~~~ 48 (115)
..+|++|+|-|..=+.++..|+..|.+|+.+||++.-++...++.
T Consensus 3 eeyDvivlGTgl~ecilS~~Ls~~gkkVLhiDrN~yYG~~saslt 47 (440)
T KOG1439|consen 3 EEYDVIVLGTGLTECILSGALSVDGKKVLHIDRNDYYGGESASLT 47 (440)
T ss_pred CceeEEEEcCCchhheeeeeeeecCcEEEEEeCCCCCCcccccee
Confidence 349999999999999999999999999999999998665555443
No 494
>cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E.coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=95.98 E-value=0.02 Score=37.71 Aligned_cols=34 Identities=29% Similarity=0.382 Sum_probs=29.9
Q ss_pred cccEEEECCCHHHHHHHHHHHHCCC-ceEEEcCCC
Q 047339 5 EKDVVIIGAGIAGLATALALKRLGI-KPLVLEKSD 38 (115)
Q Consensus 5 ~~~v~IvG~G~~Gl~~A~~l~~~g~-~v~viE~~~ 38 (115)
+.+|+|+|+|-.|..+|..|++.|+ +++|+|...
T Consensus 11 ~~~VlVvG~GGvGs~va~~Lar~GVg~i~LvD~D~ 45 (231)
T cd00755 11 NAHVAVVGLGGVGSWAAEALARSGVGKLTLIDFDV 45 (231)
T ss_pred CCCEEEECCCHHHHHHHHHHHHcCCCEEEEECCCE
Confidence 5689999999999999999999997 788888543
No 495
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=95.98 E-value=0.036 Score=40.04 Aligned_cols=35 Identities=26% Similarity=0.249 Sum_probs=28.8
Q ss_pred cccEEEECCCHHHHHHHHHHHHCCC-ceEEEcCCCC
Q 047339 5 EKDVVIIGAGIAGLATALALKRLGI-KPLVLEKSDG 39 (115)
Q Consensus 5 ~~~v~IvG~G~~Gl~~A~~l~~~g~-~v~viE~~~~ 39 (115)
..+|+|||+|..|+-+|..+.+.|. +|++++....
T Consensus 281 gk~VvVIGgG~~g~e~A~~~~~~ga~~Vt~~~~~~~ 316 (471)
T PRK12810 281 GKHVVVIGGGDTGMDCVGTAIRQGAKSVTQRDIMPM 316 (471)
T ss_pred CCEEEEECCcHHHHHHHHHHHHcCCCeEEEccccCC
Confidence 3579999999999999998888886 7887765543
No 496
>TIGR01759 MalateDH-SF1 malate dehydrogenase. This model represents a family of malate dehydrogenases in bacteria and eukaryotes which utilize either NAD or NADP depending on the species and context. MDH interconverts malate and oxaloacetate and is a part of the citric acid cycle as well as the C4 cycle in certain photosynthetic organisms.
Probab=95.97 E-value=0.016 Score=39.93 Aligned_cols=35 Identities=17% Similarity=0.205 Sum_probs=30.1
Q ss_pred ccccEEEECC-CHHHHHHHHHHHHCCC-------ceEEEcCCC
Q 047339 4 VEKDVVIIGA-GIAGLATALALKRLGI-------KPLVLEKSD 38 (115)
Q Consensus 4 ~~~~v~IvG~-G~~Gl~~A~~l~~~g~-------~v~viE~~~ 38 (115)
.+.+|.|||+ |..|.++|+.|...++ ++.|+|.++
T Consensus 2 ~p~KV~IIGa~G~VG~~~a~~l~~~~~~~~~~~~el~L~Di~~ 44 (323)
T TIGR01759 2 KPVRVAVTGAAGQIGYSLLFRIASGELFGKDQPVVLHLLDIPP 44 (323)
T ss_pred CCeEEEEECCCcHHHHHHHHHHHhCCcccCCCccEEEEEecCC
Confidence 3579999998 9999999999998885 688998754
No 497
>PRK00421 murC UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=95.96 E-value=0.014 Score=42.01 Aligned_cols=33 Identities=27% Similarity=0.340 Sum_probs=30.0
Q ss_pred ccEEEECCCHHHHH-HHHHHHHCCCceEEEcCCC
Q 047339 6 KDVVIIGAGIAGLA-TALALKRLGIKPLVLEKSD 38 (115)
Q Consensus 6 ~~v~IvG~G~~Gl~-~A~~l~~~g~~v~viE~~~ 38 (115)
.+|.|+|.|-+|+. +|.+|.+.|++|.+.|.+.
T Consensus 8 ~~v~viG~G~sG~s~~a~~L~~~G~~V~~~D~~~ 41 (461)
T PRK00421 8 KRIHFVGIGGIGMSGLAEVLLNLGYKVSGSDLKE 41 (461)
T ss_pred CEEEEEEEchhhHHHHHHHHHhCCCeEEEECCCC
Confidence 46999999999999 6999999999999999754
No 498
>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase. Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann
Probab=95.96 E-value=0.022 Score=34.58 Aligned_cols=35 Identities=40% Similarity=0.527 Sum_probs=30.0
Q ss_pred cccEEEECCCHHHHHHHHHHHHCC-CceEEEcCCCC
Q 047339 5 EKDVVIIGAGIAGLATALALKRLG-IKPLVLEKSDG 39 (115)
Q Consensus 5 ~~~v~IvG~G~~Gl~~A~~l~~~g-~~v~viE~~~~ 39 (115)
..+++|+|+|..|...+..|.+.| .+|.+++++..
T Consensus 19 ~~~i~iiG~G~~g~~~a~~l~~~g~~~v~v~~r~~~ 54 (155)
T cd01065 19 GKKVLILGAGGAARAVAYALAELGAAKIVIVNRTLE 54 (155)
T ss_pred CCEEEEECCcHHHHHHHHHHHHCCCCEEEEEcCCHH
Confidence 467999999999999999999986 78999987643
No 499
>cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins. Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al
Probab=95.95 E-value=0.026 Score=31.14 Aligned_cols=32 Identities=34% Similarity=0.475 Sum_probs=28.7
Q ss_pred cccEEEECCCHHHHHHHHHHHHC-CCceEEEcC
Q 047339 5 EKDVVIIGAGIAGLATALALKRL-GIKPLVLEK 36 (115)
Q Consensus 5 ~~~v~IvG~G~~Gl~~A~~l~~~-g~~v~viE~ 36 (115)
..+++|+|+|-+|..++..|.+. +.++.++++
T Consensus 23 ~~~v~i~G~G~~g~~~a~~l~~~~~~~v~v~~r 55 (86)
T cd05191 23 GKTVVVLGAGEVGKGIAKLLADEGGKKVVLCDR 55 (86)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcC
Confidence 46799999999999999999998 678889987
No 500
>PRK05565 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=95.93 E-value=0.021 Score=36.98 Aligned_cols=38 Identities=29% Similarity=0.392 Sum_probs=31.2
Q ss_pred CCCccccEEEECC-CHHHHHHHHHHHHCCCceEEE-cCCC
Q 047339 1 METVEKDVVIIGA-GIAGLATALALKRLGIKPLVL-EKSD 38 (115)
Q Consensus 1 m~~~~~~v~IvG~-G~~Gl~~A~~l~~~g~~v~vi-E~~~ 38 (115)
|..+...++|+|| |..|..+|..|++.|++|.++ .+++
T Consensus 1 ~~~~~~~ilI~Gasg~iG~~la~~l~~~g~~v~~~~~r~~ 40 (247)
T PRK05565 1 MKLMGKVAIVTGASGGIGRAIAELLAKEGAKVVIAYDINE 40 (247)
T ss_pred CCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEcCCCH
Confidence 4445567899987 788999999999999999988 7654
Done!