Query 047340
Match_columns 67
No_of_seqs 92 out of 104
Neff 4.2
Searched_HMMs 29240
Date Mon Mar 25 17:51:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047340.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/047340hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2x43_S Sherp; membrane protein 93.7 0.071 2.4E-06 32.0 3.4 50 6-55 7-56 (67)
2 2x43_S Sherp; membrane protein 93.0 0.21 7.3E-06 29.9 4.8 50 14-63 4-53 (67)
3 1yww_A Hypothetical protein PA 79.4 0.19 6.7E-06 30.7 -1.3 58 5-62 23-84 (85)
4 1ryk_A Protein YJBJ; alpha pro 69.5 1.5 5.1E-05 25.2 0.9 57 7-63 5-65 (69)
5 2l9q_A 12 kDa heat shock prote 54.2 7.1 0.00024 25.1 2.0 33 25-57 73-105 (109)
6 3tj6_B Protein PS 120; cytoske 28.6 37 0.0013 16.3 1.8 14 48-61 3-16 (23)
7 2kfe_A Meucin-24; alpha-helix, 27.3 44 0.0015 16.4 2.0 16 24-39 4-19 (26)
8 1oef_A Apolipoprotein E; glyco 13.3 1.3E+02 0.0044 13.8 2.4 18 45-62 7-24 (26)
9 1oeg_A Apolipoprotein E; siali 6.7 2E+02 0.0069 13.8 1.1 18 47-64 5-22 (26)
10 1l4a_C S-SNAP25 fusion protein 6.3 4.7E+02 0.016 15.2 2.9 25 41-65 11-35 (83)
No 1
>2x43_S Sherp; membrane protein; NMR {Leishmania major}
Probab=93.65 E-value=0.071 Score=31.97 Aligned_cols=50 Identities=30% Similarity=0.480 Sum_probs=35.6
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhH
Q 047340 6 QKMSYQAGEAKGQAQEKANTMMDKAGNAAQSAKDSMNQAGEQVKAKAQGA 55 (67)
Q Consensus 6 ~~~s~~AGea~gqaqeKa~~~m~~ak~aAqaakd~~qqageqvk~~AqgA 55 (67)
+++...|+|++-.+..|+.++-+-+.++|...+|.+.++.+.+|.+..|-
T Consensus 7 Dk~~~~A~E~kd~~~dK~qElKdga~~KAaelkD~~~~~~E~iKDKisgG 56 (67)
T 2x43_S 7 DQMKNAAAEAKDNVHDKIQELKDDVGNKAAEVRDAVSSTVESIKDKLSGG 56 (67)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTTTTTTHHHHHHHHHHHHHHHHHHTTTSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHhHHHHHHHHhccC
Confidence 45666777777777777777777777777777777777777777766553
No 2
>2x43_S Sherp; membrane protein; NMR {Leishmania major}
Probab=93.00 E-value=0.21 Score=29.85 Aligned_cols=50 Identities=20% Similarity=0.330 Sum_probs=38.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhHHHHHHHHh
Q 047340 14 EAKGQAQEKANTMMDKAGNAAQSAKDSMNQAGEQVKAKAQGAADSVKNAT 63 (67)
Q Consensus 14 ea~gqaqeKa~~~m~~ak~aAqaakd~~qqageqvk~~AqgA~davK~~~ 63 (67)
|++-++.+|+.++-+++-|+++.-||.+.--.-.++.++...++.+|+++
T Consensus 4 E~kDk~~~~A~E~kd~~~dK~qElKdga~~KAaelkD~~~~~~E~iKDKi 53 (67)
T 2x43_S 4 ETRDQMKNAAAEAKDNVHDKIQELKDDVGNKAAEVRDAVSSTVESIKDKL 53 (67)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTTTTTTHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHhHHHHHHHHh
Confidence 78889999999999999999999998665555556666666666666654
No 3
>1yww_A Hypothetical protein PA4738; structural genomics, YJBJ, PSI, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Pseudomonas aeruginosa}
Probab=79.35 E-value=0.19 Score=30.71 Aligned_cols=58 Identities=14% Similarity=0.149 Sum_probs=41.0
Q ss_pred hHHHhhHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHhHHHHHHHHHHhhHHHHHHHH
Q 047340 5 SQKMSYQAGEAKGQAQEKANTMMDK----AGNAAQSAKDSMNQAGEQVKAKAQGAADSVKNA 62 (67)
Q Consensus 5 s~~~s~~AGea~gqaqeKa~~~m~~----ak~aAqaakd~~qqageqvk~~AqgA~davK~~ 62 (67)
.+++.=++-+++|.++|..+.+.+. +.-.++.+.-.+|+..+.++..+...+|.+++.
T Consensus 23 ~dkieG~~~q~kGk~KE~~GklTgd~~~eaEGk~~q~~Gk~qe~~g~~Kd~~k~~vd~~~~~ 84 (85)
T 1yww_A 23 SDVIKGKWKQLTGKIKERWGDLTDDDLQAADGHAEYLVGKLQERYGWSKERAEQEVRDFSDR 84 (85)
T ss_dssp CCCTTTSHHHHHHHHHHHCTTSCHHHHSSSCCSHHHHHHHHHHHTCCCHHHHHHHHHHHHHT
T ss_pred HHHHHhHHHHHHHHHHHHHHHhcCCHhHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 3455556788899999998888774 333456667777777777777777777776653
No 4
>1ryk_A Protein YJBJ; alpha protein, structural genomics, protein structure initiative, OCSP, NESG, PSI, northeast structural genomics consortium; NMR {Escherichia coli} SCOP: a.60.11.1
Probab=69.48 E-value=1.5 Score=25.19 Aligned_cols=57 Identities=11% Similarity=0.068 Sum_probs=40.6
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHhHHHHHHHHHHhhHHHHHHHHh
Q 047340 7 KMSYQAGEAKGQAQEKANTMMDK----AGNAAQSAKDSMNQAGEQVKAKAQGAADSVKNAT 63 (67)
Q Consensus 7 ~~s~~AGea~gqaqeKa~~~m~~----ak~aAqaakd~~qqageqvk~~AqgA~davK~~~ 63 (67)
++.=+.-+++|.++|..+.+.+. +.-.++.+.-.+|+....++..+.+.+|.+.+.+
T Consensus 5 ki~G~~~q~kGk~Ke~~G~lTgd~~~~~eG~~~q~~Gk~q~~~g~~kd~~~~~~d~~~~~~ 65 (69)
T 1ryk_A 5 EAGGNWKQFKGKVKEQWGKLTDDDMTIIEGKRDQLVGKIQERYGYQKDQAEKEVVDWETRN 65 (69)
T ss_dssp CSSSHHHHHHHHHHHHTCSSCHHHHHHHTTCHHHHHHHHHHHTCCCHHHHHHHHHHHHHHH
T ss_pred HHhhhHHHHHhHHHHHHHHhcCCHhHHHcchHHHHhHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34556778899999998888774 3333556666777777777777777777776654
No 5
>2l9q_A 12 kDa heat shock protein; structural genomics, PSI-2, protein structure initiative, CE eukaryotic structural genomics, CESG; NMR {Saccharomyces cerevisiae} PDB: 2ljl_A
Probab=54.25 E-value=7.1 Score=25.08 Aligned_cols=33 Identities=30% Similarity=0.452 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHhhHHH
Q 047340 25 TMMDKAGNAAQSAKDSMNQAGEQVKAKAQGAAD 57 (67)
Q Consensus 25 ~~m~~ak~aAqaakd~~qqageqvk~~AqgA~d 57 (67)
-+.++++++...+++.|..+.|-|.....|+.+
T Consensus 73 s~~dkak~a~g~~ke~l~~AaeyVS~~~~G~~~ 105 (109)
T 2l9q_A 73 SLADQARDYMGAAKSKLNDAVEYVSGRVHGEED 105 (109)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSC
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHhhccCCCC
Confidence 355666777777777777777666666555443
No 6
>3tj6_B Protein PS 120; cytoskeleton, epidemic typhus, SCA4, spotted fever, alpha-HE bundle domain, protein-protein interactions, cell adhesion; 2.76A {Rickettsia rickettsii}
Probab=28.57 E-value=37 Score=16.26 Aligned_cols=14 Identities=21% Similarity=0.309 Sum_probs=10.4
Q ss_pred HHHHHhhHHHHHHH
Q 047340 48 VKAKAQGAADSVKN 61 (67)
Q Consensus 48 vk~~AqgA~davK~ 61 (67)
+=+++|+..+++|+
T Consensus 3 Iynkaqdv~~AL~n 16 (23)
T 3tj6_B 3 IYNKAREVINAVNP 16 (26)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 44678888888876
No 7
>2kfe_A Meucin-24; alpha-helix, antimicrobial protein; NMR {Synthetic}
Probab=27.33 E-value=44 Score=16.41 Aligned_cols=16 Identities=13% Similarity=0.231 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHHHH
Q 047340 24 NTMMDKAGNAAQSAKD 39 (67)
Q Consensus 24 ~~~m~~ak~aAqaakd 39 (67)
.+.|++.++.-..++|
T Consensus 4 kei~~kiK~kl~~akd 19 (26)
T 2kfe_A 4 REFMSNLKEKLSGVKE 19 (26)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHH
Confidence 4556666665555555
No 8
>1oef_A Apolipoprotein E; glycoprotein, plasma, lipid transport, HDL, VLDL, chylomicron, sialic acid, heparin-binding; NMR {Homo sapiens} SCOP: j.39.1.1
Probab=13.34 E-value=1.3e+02 Score=13.81 Aligned_cols=18 Identities=22% Similarity=0.311 Sum_probs=9.5
Q ss_pred HHHHHHHHhhHHHHHHHH
Q 047340 45 GEQVKAKAQGAADSVKNA 62 (67)
Q Consensus 45 geqvk~~AqgA~davK~~ 62 (67)
+++++..-+.-.|.|+.+
T Consensus 7 ~e~ik~q~~~i~e~i~~a 24 (26)
T 1oef_A 7 VEDMQRQWAGLVEKVQAA 24 (26)
T ss_dssp HHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHhh
Confidence 345555555555555544
No 9
>1oeg_A Apolipoprotein E; sialic acid, heparin-binding, repeat, signal, disease mutation, polymorphism; NMR {Homo sapiens} SCOP: j.39.1.1
Probab=6.72 E-value=2e+02 Score=13.83 Aligned_cols=18 Identities=22% Similarity=0.427 Sum_probs=9.3
Q ss_pred HHHHHHhhHHHHHHHHhc
Q 047340 47 QVKAKAQGAADSVKNATG 64 (67)
Q Consensus 47 qvk~~AqgA~davK~~~G 64 (67)
++...-++.+|.||.+++
T Consensus 5 ~mr~Q~~~lveKvq~a~~ 22 (26)
T 1oeg_A 5 DMQRQWAGLVEKVQAAVG 22 (26)
T ss_dssp HTTTHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHHHHc
Confidence 333444555666666554
No 10
>1l4a_C S-SNAP25 fusion protein; snare, snare complex, membrane fusion, neurotransmission, endocytosis/exocytosis complex; 2.95A {Loligo pealei} SCOP: h.1.15.1
Probab=6.32 E-value=4.7e+02 Score=15.23 Aligned_cols=25 Identities=12% Similarity=0.255 Sum_probs=0.0
Q ss_pred HhHHHHHHHHHHhhHHHHHHHHhcc
Q 047340 41 MNQAGEQVKAKAQGAADSVKNATGM 65 (67)
Q Consensus 41 ~qqageqvk~~AqgA~davK~~~Gm 65 (67)
+++.-+.+...++...+++.+.++|
T Consensus 11 ~q~l~~~~~~~~~esl~STrr~l~l 35 (83)
T 1l4a_C 11 LEEIQQQCNQVTDDSLESTRRMLNM 35 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHH
Done!