Query 047340
Match_columns 67
No_of_seqs 92 out of 104
Neff 4.2
Searched_HMMs 13730
Date Mon Mar 25 17:51:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047340.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/047340hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1ryka_ a.60.11.1 (A:) Hypothe 34.2 5.2 0.00038 21.8 0.5 51 8-58 6-60 (69)
2 d1i6la_ c.26.1.1 (A:) Tryptoph 24.6 83 0.006 20.1 8.0 55 13-67 266-326 (326)
3 d1aoca_ g.17.1.5 (A:) Coagulog 6.1 2E+02 0.015 17.6 2.8 21 46-66 24-44 (175)
4 d1r4xa2 d.105.1.2 (A:763-873) 5.8 1.3E+02 0.0098 17.0 1.7 15 52-66 35-49 (111)
5 d1uxya2 d.146.1.1 (A:201-342) 5.1 2.5E+02 0.018 16.1 2.7 23 44-66 99-121 (142)
6 d2b0ha1 a.24.9.2 (A:1838-1973) 3.8 3.6E+02 0.026 14.6 3.9 27 13-39 7-33 (136)
7 d1hska2 d.146.1.1 (A:209-317) 3.7 3.8E+02 0.027 14.7 2.7 22 45-66 75-96 (109)
8 d2fqma1 d.378.1.1 (A:107-171) 3.5 3.1E+02 0.023 14.4 2.0 22 17-38 23-44 (65)
9 d1l2pa_ f.23.21.1 (A:) F1F0 AT 3.1 3.7E+02 0.027 13.5 7.8 43 8-50 7-50 (61)
10 d1we3a1 a.129.1.1 (A:3-138,A:4 2.9 5.4E+02 0.039 15.1 3.1 23 42-64 8-30 (255)
No 1
>d1ryka_ a.60.11.1 (A:) Hypothetical protein YjbJ {Escherichia coli [TaxId: 562]}
Probab=34.18 E-value=5.2 Score=21.75 Aligned_cols=51 Identities=12% Similarity=0.058 Sum_probs=28.0
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHhHHHHHHHHHHhhHHHH
Q 047340 8 MSYQAGEAKGQAQEKANTMMDKAGNA----AQSAKDSMNQAGEQVKAKAQGAADS 58 (67)
Q Consensus 8 ~s~~AGea~gqaqeKa~~~m~~ak~a----Aqaakd~~qqageqvk~~AqgA~da 58 (67)
+.=+.-+.+|..++..+.+.+.-..- +......+|+.-..++..+...++-
T Consensus 6 i~G~~~q~kGkvke~~G~lT~d~~~~~eG~~eql~Gk~Q~~yG~~kd~a~~~v~~ 60 (69)
T d1ryka_ 6 AGGNWKQFKGKVKEQWGKLTDDDMTIIEGKRDQLVGKIQERYGYQKDQAEKEVVD 60 (69)
T ss_dssp SSSHHHHHHHHHHHHTCSSCHHHHHHHTTCHHHHHHHHHHHTCCCHHHHHHHHHH
T ss_pred HhhHHHHHhhHHHHHHhhccCCHHHHhcCcHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 44456788888888888886543322 2333334444444444444444443
No 2
>d1i6la_ c.26.1.1 (A:) Tryptophanyl-tRNA synthetase (TrpRS) {Bacillus stearothermophilus [TaxId: 1422]}
Probab=24.57 E-value=83 Score=20.09 Aligned_cols=55 Identities=11% Similarity=0.184 Sum_probs=39.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH------HHHHHHhHHHHHHHHHHhhHHHHHHHHhccCC
Q 047340 13 GEAKGQAQEKANTMMDKAGNAAQ------SAKDSMNQAGEQVKAKAQGAADSVKNATGMNK 67 (67)
Q Consensus 13 Gea~gqaqeKa~~~m~~ak~aAq------aakd~~qqageqvk~~AqgA~davK~~~Gm~k 67 (67)
|+.|...-|...+...-..+.-. .-.+.+.+-.++++..|+..-+-|++.+|+++
T Consensus 266 gdlK~~lae~i~~~L~PiRer~~~l~~~~~l~~iL~~Ga~kAr~~A~~tl~~Vr~~~Gl~r 326 (326)
T d1i6la_ 266 GVFKADLAQVVIETLRPIQERYHHWMESEELDRVLDEGAEKANRVASEMVRKMEQAMGLGR 326 (326)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 56666665555555554444322 23457889999999999999999999999975
No 3
>d1aoca_ g.17.1.5 (A:) Coagulogen {Japanese horseshoe crab (Tachypleus tridentatus) [TaxId: 6853]}
Probab=6.05 E-value=2e+02 Score=17.65 Aligned_cols=21 Identities=24% Similarity=0.496 Sum_probs=15.7
Q ss_pred HHHHHHHhhHHHHHHHHhccC
Q 047340 46 EQVKAKAQGAADSVKNATGMN 66 (67)
Q Consensus 46 eqvk~~AqgA~davK~~~Gm~ 66 (67)
+.+|.+...|+++|-+.-|++
T Consensus 24 ~e~kdkie~av~ai~~~~~is 44 (175)
T d1aoca_ 24 TEIKDKIEKAVEAVAQESGVS 44 (175)
T ss_dssp HHHHHHHHHHHHHHHHTTCSS
T ss_pred hhhHHHHHHHHHHhhcccccc
Confidence 456777888888888877664
No 4
>d1r4xa2 d.105.1.2 (A:763-873) Coatomer gamma subunit, C-terminal subdomain {Human (Homo sapiens) [TaxId: 9606]}
Probab=5.76 E-value=1.3e+02 Score=17.01 Aligned_cols=15 Identities=20% Similarity=0.310 Sum_probs=11.9
Q ss_pred HhhHHHHHHHHhccC
Q 047340 52 AQGAADSVKNATGMN 66 (67)
Q Consensus 52 AqgA~davK~~~Gm~ 66 (67)
-++|++.+.+.|||.
T Consensus 35 l~eAv~~li~~Lgm~ 49 (111)
T d1r4xa2 35 LEEAVGNIVKFLGMH 49 (111)
T ss_dssp HHHHHHHHHHHHTCE
T ss_pred HHHHHHHHHHHcCCc
Confidence 356888999999983
No 5
>d1uxya2 d.146.1.1 (A:201-342) Uridine diphospho-N-Acetylenolpyruvylglucosamine reductase, MurB, C-terminal domain {Escherichia coli [TaxId: 562]}
Probab=5.07 E-value=2.5e+02 Score=16.10 Aligned_cols=23 Identities=17% Similarity=0.084 Sum_probs=17.0
Q ss_pred HHHHHHHHHhhHHHHHHHHhccC
Q 047340 44 AGEQVKAKAQGAADSVKNATGMN 66 (67)
Q Consensus 44 ageqvk~~AqgA~davK~~~Gm~ 66 (67)
++..|..-+....+.|+++||+.
T Consensus 99 ta~Di~~L~~~I~~~V~~kfgI~ 121 (142)
T d1uxya2 99 KSEDVVQLAHHVRQKVGEKFNVW 121 (142)
T ss_dssp CHHHHHHHHHHHHHHHHHHHSCC
T ss_pred CHHHHHHHHHHHHHHHHHHHCCe
Confidence 34566677777888888888874
No 6
>d2b0ha1 a.24.9.2 (A:1838-1973) Talin 1 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=3.85 E-value=3.6e+02 Score=14.63 Aligned_cols=27 Identities=22% Similarity=0.369 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047340 13 GEAKGQAQEKANTMMDKAGNAAQSAKD 39 (67)
Q Consensus 13 Gea~gqaqeKa~~~m~~ak~aAqaakd 39 (67)
||-.+-=++==++|+..+++-+..+.+
T Consensus 7 ~~~~~sf~~~Q~~~~~~ak~l~~~~~~ 33 (136)
T d2b0ha1 7 GDPEGSFVDYQTTMVRTAKAIAVTVQE 33 (136)
T ss_dssp CCSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCccHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333334556666665555555
No 7
>d1hska2 d.146.1.1 (A:209-317) Uridine diphospho-N-Acetylenolpyruvylglucosamine reductase, MurB, C-terminal domain {Staphylococcus aureus [TaxId: 1280]}
Probab=3.72 E-value=3.8e+02 Score=14.65 Aligned_cols=22 Identities=14% Similarity=0.187 Sum_probs=14.8
Q ss_pred HHHHHHHHhhHHHHHHHHhccC
Q 047340 45 GEQVKAKAQGAADSVKNATGMN 66 (67)
Q Consensus 45 geqvk~~AqgA~davK~~~Gm~ 66 (67)
+..|..-+.-..+.|++.||+.
T Consensus 75 a~di~~Li~~i~~~V~~~~gI~ 96 (109)
T d1hska2 75 ATDYENLIHYVQKTVKEKFGIE 96 (109)
T ss_dssp HHHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHHHHHHHCCc
Confidence 4455666666777788888763
No 8
>d2fqma1 d.378.1.1 (A:107-171) Phosphoprotein P (M1) {Vesicular stomatitis indiana virus [TaxId: 11277]}
Probab=3.47 E-value=3.1e+02 Score=14.42 Aligned_cols=22 Identities=32% Similarity=0.284 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 047340 17 GQAQEKANTMMDKAGNAAQSAK 38 (67)
Q Consensus 17 gqaqeKa~~~m~~ak~aAqaak 38 (67)
|-+++-.+|++-.++.-.+++|
T Consensus 23 gLt~~Q~~QW~~TIeav~qSak 44 (65)
T d2fqma1 23 GLSGEQKSQWMLTIKAVVQSAK 44 (65)
T ss_dssp SCCHHHHHHHHHHHHHHHHHHH
T ss_pred CcchHHHHHHHHHHHHHHhhhc
Confidence 3456777888888877777776
No 9
>d1l2pa_ f.23.21.1 (A:) F1F0 ATP synthase subunit B, membrane domain {Escherichia coli [TaxId: 562]}
Probab=3.13 E-value=3.7e+02 Score=13.46 Aligned_cols=43 Identities=21% Similarity=0.280 Sum_probs=28.7
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHH
Q 047340 8 MSYQAGEAKGQAQEKANTMMDKAGNAAQSAKD-SMNQAGEQVKA 50 (67)
Q Consensus 8 ~s~~AGea~gqaqeKa~~~m~~ak~aAqaakd-~~qqageqvk~ 50 (67)
.--.|.++..++...++++++-+++.|..=.+ .+.++-.++-.
T Consensus 7 AK~eAa~Ii~qA~~ra~qIveeak~~A~~Ea~rI~~~A~~eIe~ 50 (61)
T d1l2pa_ 7 AKAEAQVIIEQANKRRSQILDEAKAEAEQERTKIVAQAQAEIEA 50 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567888889999999998888887764444 33444334433
No 10
>d1we3a1 a.129.1.1 (A:3-138,A:409-527) GroEL, E domain {Thermus thermophilus [TaxId: 274]}
Probab=2.93 E-value=5.4e+02 Score=15.10 Aligned_cols=23 Identities=22% Similarity=0.306 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHhhHHHHHHHHhc
Q 047340 42 NQAGEQVKAKAQGAADSVKNATG 64 (67)
Q Consensus 42 qqageqvk~~AqgA~davK~~~G 64 (67)
.++-..+.....--+|+||-+||
T Consensus 8 ~~ar~~l~~gv~~la~av~~tlG 30 (255)
T d1we3a1 8 EAARRALERGVNAVANAVKVTLG 30 (255)
T ss_dssp HHHHHHHHHHHHHHHHHHGGGCS
T ss_pred HHHHHHHHHhHHHHHHHHhcccC
Done!