BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 047341
(254 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1U67|A Chain A, Crystal Structure Of Arachidonic Acid Bound To A Mutant Of
Prostagladin H Synthase-1 That Forms Predominantly
11-hpete
Length = 600
Score = 37.4 bits (85), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 30/62 (48%), Gaps = 6/62 (9%)
Query: 26 MQTYALVWIDSSTKLCTRVDRAGAESPIWNEKFLFKVTPEFLSSETSAISVEIYA---SG 82
+ YA +W+ ++C D AE P W ++ LF+ L ET I +E YA SG
Sbjct: 298 LMLYATIWLREHNRVC---DLLKAEHPTWGDEQLFQTARLILIGETIKIVIEEYAQQLSG 354
Query: 83 YL 84
Y
Sbjct: 355 YF 356
>pdb|1PRH|A Chain A, The X-Ray Crystal Structure Of The Membrane Protein
Prostaglandin H2 Synthase-1
pdb|1PRH|B Chain B, The X-Ray Crystal Structure Of The Membrane Protein
Prostaglandin H2 Synthase-1
Length = 554
Score = 35.8 bits (81), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 29/62 (46%), Gaps = 6/62 (9%)
Query: 26 MQTYALVWIDSSTKLCTRVDRAGAESPIWNEKFLFKVTPEFLSSETSAISVEIYA---SG 82
+ YA +W+ ++C D AE P W ++ LF+ L ET I +E Y SG
Sbjct: 266 LMLYATIWLREHQRVC---DLLKAEHPTWGDEQLFQTAKLILIGETIKIVIEEYVQQLSG 322
Query: 83 YL 84
Y
Sbjct: 323 YF 324
>pdb|2OYE|P Chain P, Indomethacin-(r)-alpha-ethyl-ethanolamide Bound To
Cyclooxygenase-1
pdb|2OYU|P Chain P, Indomethacin-(S)-Alpha-Ethyl-Ethanolamide Bound To
Cyclooxygenase-1
Length = 600
Score = 35.4 bits (80), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 29/62 (46%), Gaps = 6/62 (9%)
Query: 26 MQTYALVWIDSSTKLCTRVDRAGAESPIWNEKFLFKVTPEFLSSETSAISVEIYA---SG 82
+ YA +W+ ++C D AE P W ++ LF+ L ET I +E Y SG
Sbjct: 298 LMLYATIWLREHNRVC---DLLKAEHPTWGDEQLFQTARLILIGETIKIVIEEYVQQLSG 354
Query: 83 YL 84
Y
Sbjct: 355 YF 356
>pdb|1EBV|A Chain A, Ovine Pghs-1 Complexed With Salicyl Hydroxamic Acid
Length = 551
Score = 35.4 bits (80), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 29/62 (46%), Gaps = 6/62 (9%)
Query: 26 MQTYALVWIDSSTKLCTRVDRAGAESPIWNEKFLFKVTPEFLSSETSAISVEIYA---SG 82
+ YA +W+ ++C D AE P W ++ LF+ L ET I +E Y SG
Sbjct: 266 LMLYATIWLREHNRVC---DLLKAEHPTWGDEQLFQTARLILIGETIKIVIEEYVQQLSG 322
Query: 83 YL 84
Y
Sbjct: 323 YF 324
>pdb|3N8Y|B Chain B, Structure Of Aspirin Acetylated Cyclooxygenase-1 In
Complex With Diclofenac
Length = 553
Score = 35.4 bits (80), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 29/62 (46%), Gaps = 6/62 (9%)
Query: 26 MQTYALVWIDSSTKLCTRVDRAGAESPIWNEKFLFKVTPEFLSSETSAISVEIYA---SG 82
+ YA +W+ ++C D AE P W ++ LF+ L ET I +E Y SG
Sbjct: 267 LMLYATIWLREHNRVC---DLLKAEHPTWGDEQLFQTARLILIGETIKIVIEEYVQQLSG 323
Query: 83 YL 84
Y
Sbjct: 324 YF 325
>pdb|1PTH|A Chain A, The Structural Basis Of Aspirin Activity Inferred From The
Crystal Structure Of Inactivated Prostaglandin H2
Synthase
pdb|1PTH|B Chain B, The Structural Basis Of Aspirin Activity Inferred From The
Crystal Structure Of Inactivated Prostaglandin H2
Synthase
Length = 576
Score = 35.4 bits (80), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 29/62 (46%), Gaps = 6/62 (9%)
Query: 26 MQTYALVWIDSSTKLCTRVDRAGAESPIWNEKFLFKVTPEFLSSETSAISVEIYA---SG 82
+ YA +W+ ++C D AE P W ++ LF+ L ET I +E Y SG
Sbjct: 274 LMLYATIWLREHNRVC---DLLKAEHPTWGDEQLFQTARLILIGETIKIVIEEYVQQLSG 330
Query: 83 YL 84
Y
Sbjct: 331 YF 332
>pdb|1PGE|A Chain A, Prostaglandin H2 Synthase-1 Complexed With
P-(2'-Iodo-5'-Thenoyl) Hydrotropic Acid (Iodosuprofen)
pdb|1PGE|B Chain B, Prostaglandin H2 Synthase-1 Complexed With
P-(2'-Iodo-5'-Thenoyl) Hydrotropic Acid (Iodosuprofen)
pdb|1PGF|A Chain A, Prostaglandin H2 Synthase-1 Complexed With
1-(4-Iodobenzoyl)-5- Methoxy-2-Methylindole-3-Acetic
Acid (Iodoindomethacin), Cis Model
pdb|1PGF|B Chain B, Prostaglandin H2 Synthase-1 Complexed With
1-(4-Iodobenzoyl)-5- Methoxy-2-Methylindole-3-Acetic
Acid (Iodoindomethacin), Cis Model
pdb|1PGG|A Chain A, Prostaglandin H2 Synthase-1 Complexed With
1-(4-Iodobenzoyl)-5- Methoxy-2-Methylindole-3-Acetic
Acid (Iodoindomethacin), Trans Model
pdb|1PGG|B Chain B, Prostaglandin H2 Synthase-1 Complexed With
1-(4-Iodobenzoyl)-5- Methoxy-2-Methylindole-3-Acetic
Acid (Iodoindomethacin), Trans Model
pdb|1FE2|A Chain A, Crystal Structure Of Dihomo-Gamma-Linoleic Acid Bound In
The Cyclooxygenase Channel Of Prostaglandin Endoperoxide
H Synthase-1.
pdb|1IGZ|A Chain A, Crystal Structure Of Linoleic Acid Bound In The
Cyclooxygenase Channel Of Prostaglandin Endoperoxide H
Synthase-1.
pdb|1IGX|A Chain A, Crystal Structure Of Eicosapentanoic Acid Bound In The
Cyclooxygenase Channel Of Prostaglandin Endoperoxide H
Synthase-1
Length = 576
Score = 35.4 bits (80), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 29/62 (46%), Gaps = 6/62 (9%)
Query: 26 MQTYALVWIDSSTKLCTRVDRAGAESPIWNEKFLFKVTPEFLSSETSAISVEIYA---SG 82
+ YA +W+ ++C D AE P W ++ LF+ L ET I +E Y SG
Sbjct: 274 LMLYATIWLREHNRVC---DLLKAEHPTWGDEQLFQTARLILIGETIKIVIEEYVQQLSG 330
Query: 83 YL 84
Y
Sbjct: 331 YF 332
>pdb|1DIY|A Chain A, Crystal Structure Of Arachidonic Acid Bound In The
Cyclooxygenase Active Site Of Pghs-1
pdb|1Q4G|A Chain A, 2.0 Angstrom Crystal Structure Of Ovine Prostaglandin H2
Synthase-1, In Complex With
Alpha-Methyl-4-Biphenylacetic Acid
pdb|1Q4G|B Chain B, 2.0 Angstrom Crystal Structure Of Ovine Prostaglandin H2
Synthase-1, In Complex With
Alpha-Methyl-4-Biphenylacetic Acid
pdb|2AYL|A Chain A, 2.0 Angstrom Crystal Structure Of Manganese Protoporphyrin
Ix- Reconstituted Ovine Prostaglandin H2 Synthase-1
Complexed With Flurbiprofen
pdb|2AYL|B Chain B, 2.0 Angstrom Crystal Structure Of Manganese Protoporphyrin
Ix- Reconstituted Ovine Prostaglandin H2 Synthase-1
Complexed With Flurbiprofen
pdb|3KK6|A Chain A, Crystal Structure Of Cyclooxygenase-1 In Complex With
Celecoxib
pdb|3KK6|B Chain B, Crystal Structure Of Cyclooxygenase-1 In Complex With
Celecoxib
pdb|3N8V|A Chain A, Crystal Structure Of Unoccupied Cyclooxygenase-1
pdb|3N8V|B Chain B, Crystal Structure Of Unoccupied Cyclooxygenase-1
pdb|3N8W|A Chain A, Crystal Structure Of R120qNATIVE CYCLOOXYGENASE-1
Heterodimer Mutant In Complex With Flurbiprofen
pdb|3N8X|A Chain A, Crystal Structure Of Cyclooxygenase-1 In Complex With
Nimesulide
pdb|3N8X|B Chain B, Crystal Structure Of Cyclooxygenase-1 In Complex With
Nimesulide
pdb|3N8Y|A Chain A, Structure Of Aspirin Acetylated Cyclooxygenase-1 In
Complex With Diclofenac
pdb|3N8Z|A Chain A, Crystal Structure Of Cyclooxygenase-1 In Complex With
Flurbiprofen
pdb|3N8Z|B Chain B, Crystal Structure Of Cyclooxygenase-1 In Complex With
Flurbiprofen
Length = 553
Score = 35.4 bits (80), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 29/62 (46%), Gaps = 6/62 (9%)
Query: 26 MQTYALVWIDSSTKLCTRVDRAGAESPIWNEKFLFKVTPEFLSSETSAISVEIYA---SG 82
+ YA +W+ ++C D AE P W ++ LF+ L ET I +E Y SG
Sbjct: 267 LMLYATIWLREHNRVC---DLLKAEHPTWGDEQLFQTARLILIGETIKIVIEEYVQQLSG 323
Query: 83 YL 84
Y
Sbjct: 324 YF 325
>pdb|1HT5|A Chain A, The 2.75 Angstrom Resolution Model Of Ovine Cox-1
Complexed With Methyl Ester Flurbiprofen
pdb|1HT5|B Chain B, The 2.75 Angstrom Resolution Model Of Ovine Cox-1
Complexed With Methyl Ester Flurbiprofen
pdb|1HT8|A Chain A, The 2.7 Angstrom Resolution Model Of Ovine Cox-1 Complexed
With Alclofenac
pdb|1HT8|B Chain B, The 2.7 Angstrom Resolution Model Of Ovine Cox-1 Complexed
With Alclofenac
Length = 551
Score = 35.4 bits (80), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 29/62 (46%), Gaps = 6/62 (9%)
Query: 26 MQTYALVWIDSSTKLCTRVDRAGAESPIWNEKFLFKVTPEFLSSETSAISVEIYA---SG 82
+ YA +W+ ++C D AE P W ++ LF+ L ET I +E Y SG
Sbjct: 266 LMLYATIWLREHNRVC---DLLKAEHPTWGDEQLFQTARLILIGETIKIVIEEYVQQLSG 322
Query: 83 YL 84
Y
Sbjct: 323 YF 324
>pdb|3N8W|B Chain B, Crystal Structure Of R120qNATIVE CYCLOOXYGENASE-1
Heterodimer Mutant In Complex With Flurbiprofen
Length = 553
Score = 35.4 bits (80), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 29/62 (46%), Gaps = 6/62 (9%)
Query: 26 MQTYALVWIDSSTKLCTRVDRAGAESPIWNEKFLFKVTPEFLSSETSAISVEIYA---SG 82
+ YA +W+ ++C D AE P W ++ LF+ L ET I +E Y SG
Sbjct: 267 LMLYATIWLREHNRVC---DLLKAEHPTWGDEQLFQTARLILIGETIKIVIEEYVQQLSG 323
Query: 83 YL 84
Y
Sbjct: 324 YF 325
>pdb|1CQE|A Chain A, Prostaglandin H2 Synthase-1 Complex With Flurbiprofen
pdb|1CQE|B Chain B, Prostaglandin H2 Synthase-1 Complex With Flurbiprofen
pdb|1EQG|A Chain A, The 2.6 Angstrom Model Of Ovine Cox-1 Complexed With
Ibuprofen
pdb|1EQG|B Chain B, The 2.6 Angstrom Model Of Ovine Cox-1 Complexed With
Ibuprofen
pdb|1EQH|A Chain A, The 2.7 Angstrom Model Of Ovine Cox-1 Complexed With
Flurbiprofen
pdb|1EQH|B Chain B, The 2.7 Angstrom Model Of Ovine Cox-1 Complexed With
Flurbiprofen
Length = 580
Score = 35.4 bits (80), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 29/62 (46%), Gaps = 6/62 (9%)
Query: 26 MQTYALVWIDSSTKLCTRVDRAGAESPIWNEKFLFKVTPEFLSSETSAISVEIYA---SG 82
+ YA +W+ ++C D AE P W ++ LF+ L ET I +E Y SG
Sbjct: 278 LMLYATIWLREHNRVC---DLLKAEHPTWGDEQLFQTARLILIGETIKIVIEEYVQQLSG 334
Query: 83 YL 84
Y
Sbjct: 335 YF 336
>pdb|1CJY|A Chain A, Human Cytosolic Phospholipase A2
pdb|1CJY|B Chain B, Human Cytosolic Phospholipase A2
Length = 749
Score = 33.9 bits (76), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 15/58 (25%), Positives = 31/58 (53%), Gaps = 4/58 (6%)
Query: 51 SPIWNEKFLFKVTPEFLSSETSAISVEIYASGYLRDYLIGTVRFLVSNISLSVATKTP 108
+P+WNE F F + P ++ + + + + + Y+ D +GT F VS++ + + P
Sbjct: 68 NPVWNETFEFILDP----NQENVLEITLMDANYVMDETLGTATFTVSSMKVGEKKEVP 121
>pdb|1RLW|A Chain A, Calcium-Phospholipid Binding Domain From Cytosolic
Phospholipase A2
Length = 126
Score = 33.5 bits (75), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 15/58 (25%), Positives = 31/58 (53%), Gaps = 4/58 (6%)
Query: 51 SPIWNEKFLFKVTPEFLSSETSAISVEIYASGYLRDYLIGTVRFLVSNISLSVATKTP 108
+P+WNE F F + P ++ + + + + + Y+ D +GT F VS++ + + P
Sbjct: 53 NPVWNETFEFILDP----NQENVLEITLMDANYVMDETLGTATFTVSSMKVGEKKEVP 106
>pdb|1BCI|A Chain A, C2 Domain Of Cytosolic Phospholipase A2, Nmr, Minimized
Average Structure
Length = 138
Score = 32.7 bits (73), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 15/58 (25%), Positives = 31/58 (53%), Gaps = 4/58 (6%)
Query: 51 SPIWNEKFLFKVTPEFLSSETSAISVEIYASGYLRDYLIGTVRFLVSNISLSVATKTP 108
+P+WNE F F + P ++ + + + + + Y+ D +GT F VS++ + + P
Sbjct: 68 NPVWNETFEFILDP----NQENVLEITLMDANYVMDETLGTATFTVSSMKVGEKKEVP 121
>pdb|3PGH|A Chain A, Cyclooxygenase-2 (Prostaglandin Synthase-2) Complexed With
A Non- Selective Inhibitor, Flurbiprofen
pdb|3PGH|B Chain B, Cyclooxygenase-2 (Prostaglandin Synthase-2) Complexed With
A Non- Selective Inhibitor, Flurbiprofen
pdb|3PGH|C Chain C, Cyclooxygenase-2 (Prostaglandin Synthase-2) Complexed With
A Non- Selective Inhibitor, Flurbiprofen
pdb|3PGH|D Chain D, Cyclooxygenase-2 (Prostaglandin Synthase-2) Complexed With
A Non- Selective Inhibitor, Flurbiprofen
pdb|4COX|A Chain A, Cyclooxygenase-2 (Prostaglandin Synthase-2) Complexed With
A Non- Selective Inhibitor, Indomethacin
pdb|4COX|B Chain B, Cyclooxygenase-2 (Prostaglandin Synthase-2) Complexed With
A Non- Selective Inhibitor, Indomethacin
pdb|4COX|C Chain C, Cyclooxygenase-2 (Prostaglandin Synthase-2) Complexed With
A Non- Selective Inhibitor, Indomethacin
pdb|4COX|D Chain D, Cyclooxygenase-2 (Prostaglandin Synthase-2) Complexed With
A Non- Selective Inhibitor, Indomethacin
pdb|5COX|A Chain A, Uninhibited Mouse Cyclooxygenase-2 (Prostaglandin
Synthase-2)
pdb|5COX|B Chain B, Uninhibited Mouse Cyclooxygenase-2 (Prostaglandin
Synthase-2)
pdb|5COX|C Chain C, Uninhibited Mouse Cyclooxygenase-2 (Prostaglandin
Synthase-2)
pdb|5COX|D Chain D, Uninhibited Mouse Cyclooxygenase-2 (Prostaglandin
Synthase-2)
pdb|6COX|A Chain A, Cyclooxygenase-2 (Prostaglandin Synthase-2) Complexed With
A Selective Inhibitor, Sc-558 In I222 Space Group
pdb|6COX|B Chain B, Cyclooxygenase-2 (Prostaglandin Synthase-2) Complexed With
A Selective Inhibitor, Sc-558 In I222 Space Group
pdb|1CX2|A Chain A, Cyclooxygenase-2 (Prostaglandin Synthase-2) Complexed With
A Selective Inhibitor, Sc-558
pdb|1CX2|B Chain B, Cyclooxygenase-2 (Prostaglandin Synthase-2) Complexed With
A Selective Inhibitor, Sc-558
pdb|1CX2|C Chain C, Cyclooxygenase-2 (Prostaglandin Synthase-2) Complexed With
A Selective Inhibitor, Sc-558
pdb|1CX2|D Chain D, Cyclooxygenase-2 (Prostaglandin Synthase-2) Complexed With
A Selective Inhibitor, Sc-558
Length = 587
Score = 32.7 bits (73), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 29/61 (47%), Gaps = 6/61 (9%)
Query: 26 MQTYALVWIDSSTKLCTRVDRAGAESPIWNEKFLFKVTPEFLSSETSAISVEIYA---SG 82
+ YA +W+ ++C D E P W ++ LF+ + L ET I +E Y SG
Sbjct: 267 LMMYATIWLREHQRVC---DILKQEHPEWGDEQLFQTSKLILIGETIKIVIEDYVQHLSG 323
Query: 83 Y 83
Y
Sbjct: 324 Y 324
>pdb|1CVU|A Chain A, Crystal Structure Of Arachidonic Acid Bound To The
Cyclooxygenase Active Site Of Cox-2
pdb|1CVU|B Chain B, Crystal Structure Of Arachidonic Acid Bound To The
Cyclooxygenase Active Site Of Cox-2
Length = 552
Score = 32.7 bits (73), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 29/61 (47%), Gaps = 6/61 (9%)
Query: 26 MQTYALVWIDSSTKLCTRVDRAGAESPIWNEKFLFKVTPEFLSSETSAISVEIYA---SG 82
+ YA +W+ ++C D E P W ++ LF+ + L ET I +E Y SG
Sbjct: 267 LMMYATIWLREHQRVC---DILKQEHPEWGDEQLFQTSKLILIGETIKIVIEDYVQHLSG 323
Query: 83 Y 83
Y
Sbjct: 324 Y 324
>pdb|3QH0|A Chain A, X-Ray Crystal Structure Of Palmitic Acid Bound To The
Cyclooxygenase Channel Of Cyclooxygenase-2
pdb|3QH0|B Chain B, X-Ray Crystal Structure Of Palmitic Acid Bound To The
Cyclooxygenase Channel Of Cyclooxygenase-2
pdb|3QMO|A Chain A, X-Ray Crystal Structure Of Ns-398 Bound To The
Cyclooxygenase Channel Of Cyclooxygenase-2
pdb|3QMO|B Chain B, X-Ray Crystal Structure Of Ns-398 Bound To The
Cyclooxygenase Channel Of Cyclooxygenase-2
pdb|4E1G|A Chain A, X-Ray Crystal Structure Of Alpha-Linolenic Acid Bound To
The Cyclooxygenase Channel Of Cyclooxygenase-2
pdb|4E1G|B Chain B, X-Ray Crystal Structure Of Alpha-Linolenic Acid Bound To
The Cyclooxygenase Channel Of Cyclooxygenase-2
Length = 610
Score = 32.7 bits (73), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 29/61 (47%), Gaps = 6/61 (9%)
Query: 26 MQTYALVWIDSSTKLCTRVDRAGAESPIWNEKFLFKVTPEFLSSETSAISVEIYA---SG 82
+ YA +W+ ++C D E P W ++ LF+ + L ET I +E Y SG
Sbjct: 290 LMMYATIWLREHNRVC---DILKQEHPEWGDEQLFQTSRLILIGETIKIVIEDYVQHLSG 346
Query: 83 Y 83
Y
Sbjct: 347 Y 347
>pdb|1PXX|A Chain A, Crystal Structure Of Diclofenac Bound To The
Cyclooxygenase Active Site Of Cox-2
pdb|1PXX|B Chain B, Crystal Structure Of Diclofenac Bound To The
Cyclooxygenase Active Site Of Cox-2
pdb|1PXX|C Chain C, Crystal Structure Of Diclofenac Bound To The
Cyclooxygenase Active Site Of Cox-2
pdb|1PXX|D Chain D, Crystal Structure Of Diclofenac Bound To The
Cyclooxygenase Active Site Of Cox-2
pdb|4FM5|A Chain A, X-Ray Structure Of Des-Methylflurbiprofen Bound To Murine
Cox-2
pdb|4FM5|B Chain B, X-Ray Structure Of Des-Methylflurbiprofen Bound To Murine
Cox-2
pdb|4FM5|C Chain C, X-Ray Structure Of Des-Methylflurbiprofen Bound To Murine
Cox-2
pdb|4FM5|D Chain D, X-Ray Structure Of Des-Methylflurbiprofen Bound To Murine
Cox-2
Length = 604
Score = 32.7 bits (73), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 29/61 (47%), Gaps = 6/61 (9%)
Query: 26 MQTYALVWIDSSTKLCTRVDRAGAESPIWNEKFLFKVTPEFLSSETSAISVEIYA---SG 82
+ YA +W+ ++C D E P W ++ LF+ + L ET I +E Y SG
Sbjct: 284 LMMYATIWLREHNRVC---DILKQEHPEWGDEQLFQTSRLILIGETIKIVIEDYVQHLSG 340
Query: 83 Y 83
Y
Sbjct: 341 Y 341
>pdb|3HS5|A Chain A, X-Ray Crystal Structure Of Arachidonic Acid Bound To The
Cyclooxygenase Channel Of Cyclooxygenase-2
pdb|3HS5|B Chain B, X-Ray Crystal Structure Of Arachidonic Acid Bound To The
Cyclooxygenase Channel Of Cyclooxygenase-2
pdb|3HS6|A Chain A, X-Ray Crystal Structure Of Eicosapentaenoic Acid Bound To
The Cyclooxygenase Channel Of Cyclooxygenase-2
pdb|3HS6|B Chain B, X-Ray Crystal Structure Of Eicosapentaenoic Acid Bound To
The Cyclooxygenase Channel Of Cyclooxygenase-2
pdb|3HS7|A Chain A, X-Ray Crystal Structure Of Docosahexaenoic Acid Bound To
The Cyclooxygenase Channel Of Cyclooxygenase-2
pdb|3HS7|B Chain B, X-Ray Crystal Structure Of Docosahexaenoic Acid Bound To
The Cyclooxygenase Channel Of Cyclooxygenase-2
Length = 591
Score = 32.7 bits (73), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 29/61 (47%), Gaps = 6/61 (9%)
Query: 26 MQTYALVWIDSSTKLCTRVDRAGAESPIWNEKFLFKVTPEFLSSETSAISVEIYA---SG 82
+ YA +W+ ++C D E P W ++ LF+ + L ET I +E Y SG
Sbjct: 271 LMMYATIWLREHNRVC---DILKQEHPEWGDEQLFQTSRLILIGETIKIVIEDYVQHLSG 327
Query: 83 Y 83
Y
Sbjct: 328 Y 328
>pdb|3NT1|A Chain A, High Resolution Structure Of Naproxen:cox-2 Complex.
pdb|3NT1|B Chain B, High Resolution Structure Of Naproxen:cox-2 Complex.
pdb|3NTB|A Chain A, Structure Of 6-Methylthio Naproxen Analog Bound To Mcox-2.
pdb|3NTB|B Chain B, Structure Of 6-Methylthio Naproxen Analog Bound To Mcox-2.
pdb|3NTB|C Chain C, Structure Of 6-Methylthio Naproxen Analog Bound To Mcox-2.
pdb|3NTB|D Chain D, Structure Of 6-Methylthio Naproxen Analog Bound To Mcox-2.
pdb|3LN0|A Chain A, Structure Of Compound 5c-S Bound At The Active Site Of
Cox-2
pdb|3LN0|B Chain B, Structure Of Compound 5c-S Bound At The Active Site Of
Cox-2
pdb|3LN0|C Chain C, Structure Of Compound 5c-S Bound At The Active Site Of
Cox-2
pdb|3LN0|D Chain D, Structure Of Compound 5c-S Bound At The Active Site Of
Cox-2
pdb|3LN1|A Chain A, Structure Of Celecoxib Bound At The Cox-2 Active Site
pdb|3LN1|B Chain B, Structure Of Celecoxib Bound At The Cox-2 Active Site
pdb|3LN1|C Chain C, Structure Of Celecoxib Bound At The Cox-2 Active Site
pdb|3LN1|D Chain D, Structure Of Celecoxib Bound At The Cox-2 Active Site
pdb|3MQE|A Chain A, Structure Of Sc-75416 Bound At The Cox-2 Active Site
pdb|3MQE|B Chain B, Structure Of Sc-75416 Bound At The Cox-2 Active Site
pdb|3MQE|C Chain C, Structure Of Sc-75416 Bound At The Cox-2 Active Site
pdb|3MQE|D Chain D, Structure Of Sc-75416 Bound At The Cox-2 Active Site
pdb|3Q7D|A Chain A, Structure Of (R)-Naproxen Bound To Mcox-2.
pdb|3Q7D|B Chain B, Structure Of (R)-Naproxen Bound To Mcox-2
Length = 587
Score = 32.3 bits (72), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 29/61 (47%), Gaps = 6/61 (9%)
Query: 26 MQTYALVWIDSSTKLCTRVDRAGAESPIWNEKFLFKVTPEFLSSETSAISVEIYA---SG 82
+ YA +W+ ++C D E P W ++ LF+ + L ET I +E Y SG
Sbjct: 267 LMMYATIWLREHNRVC---DILKQEHPEWGDEQLFQTSRLILIGETIKIVIEDYVQHLSG 323
Query: 83 Y 83
Y
Sbjct: 324 Y 324
>pdb|3TZI|A Chain A, X-Ray Crystal Structure Of Arachidonic Acid Bound In The
Cyclooxygenase Channel Of G533v Murine Cox-2
pdb|3TZI|B Chain B, X-Ray Crystal Structure Of Arachidonic Acid Bound In The
Cyclooxygenase Channel Of G533v Murine Cox-2
Length = 593
Score = 32.3 bits (72), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 29/61 (47%), Gaps = 6/61 (9%)
Query: 26 MQTYALVWIDSSTKLCTRVDRAGAESPIWNEKFLFKVTPEFLSSETSAISVEIYA---SG 82
+ YA +W+ ++C D E P W ++ LF+ + L ET I +E Y SG
Sbjct: 273 LMMYATIWLREHNRVC---DILKQEHPEWGDEQLFQTSRLILIGETIKIVIEDYVQHLSG 329
Query: 83 Y 83
Y
Sbjct: 330 Y 330
>pdb|3KRK|A Chain A, X-Ray Crystal Structure Of Arachidonic Acid Bound In The
Cyclooxygenase Channel Of L531f Murine Cox-2
pdb|3KRK|B Chain B, X-Ray Crystal Structure Of Arachidonic Acid Bound In The
Cyclooxygenase Channel Of L531f Murine Cox-2
Length = 591
Score = 32.3 bits (72), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 29/61 (47%), Gaps = 6/61 (9%)
Query: 26 MQTYALVWIDSSTKLCTRVDRAGAESPIWNEKFLFKVTPEFLSSETSAISVEIYA---SG 82
+ YA +W+ ++C D E P W ++ LF+ + L ET I +E Y SG
Sbjct: 271 LMMYATIWLREHNRVC---DILKQEHPEWGDEQLFQTSRLILIGETIKIVIEDYVQHLSG 327
Query: 83 Y 83
Y
Sbjct: 328 Y 328
>pdb|3OLT|A Chain A, X-Ray Crystal Structure Of Arachidonic Acid Bound To The
Cyclooxygenase Channel Of R513h Murine Cox-2
pdb|3OLT|B Chain B, X-Ray Crystal Structure Of Arachidonic Acid Bound To The
Cyclooxygenase Channel Of R513h Murine Cox-2
pdb|3OLU|A Chain A, X-Ray Crystal Structure Of 1-Arachidonoyl Glycerol Bound
To The Cyclooxygenase Channel Of R513h Murine Cox-2
pdb|3OLU|B Chain B, X-Ray Crystal Structure Of 1-Arachidonoyl Glycerol Bound
To The Cyclooxygenase Channel Of R513h Murine Cox-2
Length = 592
Score = 32.3 bits (72), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 29/61 (47%), Gaps = 6/61 (9%)
Query: 26 MQTYALVWIDSSTKLCTRVDRAGAESPIWNEKFLFKVTPEFLSSETSAISVEIYA---SG 82
+ YA +W+ ++C D E P W ++ LF+ + L ET I +E Y SG
Sbjct: 272 LMMYATIWLREHNRVC---DILKQEHPEWGDEQLFQTSRLILIGETIKIVIEDYVQHLSG 328
Query: 83 Y 83
Y
Sbjct: 329 Y 329
>pdb|3MDL|A Chain A, X-Ray Crystal Structure Of 1-Arachidonoyl Glycerol Bound
To The Cyclooxygenase Channel Of Cyclooxygenase-2
pdb|3MDL|B Chain B, X-Ray Crystal Structure Of 1-Arachidonoyl Glycerol Bound
To The Cyclooxygenase Channel Of Cyclooxygenase-2
Length = 587
Score = 32.3 bits (72), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 29/61 (47%), Gaps = 6/61 (9%)
Query: 26 MQTYALVWIDSSTKLCTRVDRAGAESPIWNEKFLFKVTPEFLSSETSAISVEIYA---SG 82
+ YA +W+ ++C D E P W ++ LF+ + L ET I +E Y SG
Sbjct: 272 LMMYATIWLREHNRVC---DILKQEHPEWGDEQLFQTSRLILIGETIKIVIEDYVQHLSG 328
Query: 83 Y 83
Y
Sbjct: 329 Y 329
>pdb|1DDX|A Chain A, Crystal Structure Of A Mixture Of Arachidonic Acid And
Prostaglandin Bound To The Cyclooxygenase Active Site Of
Cox-2: Prostaglandin Structure
pdb|1DDX|B Chain B, Crystal Structure Of A Mixture Of Arachidonic Acid And
Prostaglandin Bound To The Cyclooxygenase Active Site Of
Cox-2: Prostaglandin Structure
pdb|1DDX|C Chain C, Crystal Structure Of A Mixture Of Arachidonic Acid And
Prostaglandin Bound To The Cyclooxygenase Active Site Of
Cox-2: Prostaglandin Structure
pdb|1DDX|D Chain D, Crystal Structure Of A Mixture Of Arachidonic Acid And
Prostaglandin Bound To The Cyclooxygenase Active Site Of
Cox-2: Prostaglandin Structure
pdb|3NTG|A Chain A, Crystal Structure Of Cox-2 With Selective Compound 23d-(R)
pdb|3NTG|B Chain B, Crystal Structure Of Cox-2 With Selective Compound 23d-(R)
pdb|3NTG|C Chain C, Crystal Structure Of Cox-2 With Selective Compound 23d-(R)
pdb|3NTG|D Chain D, Crystal Structure Of Cox-2 With Selective Compound 23d-(R)
Length = 552
Score = 32.3 bits (72), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 29/61 (47%), Gaps = 6/61 (9%)
Query: 26 MQTYALVWIDSSTKLCTRVDRAGAESPIWNEKFLFKVTPEFLSSETSAISVEIYA---SG 82
+ YA +W+ ++C D E P W ++ LF+ + L ET I +E Y SG
Sbjct: 267 LMMYATIWLREHNRVC---DILKQEHPEWGDEQLFQTSRLILIGETIKIVIEDYVQHLSG 323
Query: 83 Y 83
Y
Sbjct: 324 Y 324
>pdb|3RR3|A Chain A, Structure Of (R)-Flurbiprofen Bound To Mcox-2
pdb|3RR3|B Chain B, Structure Of (R)-Flurbiprofen Bound To Mcox-2
pdb|3RR3|C Chain C, Structure Of (R)-Flurbiprofen Bound To Mcox-2
pdb|3RR3|D Chain D, Structure Of (R)-Flurbiprofen Bound To Mcox-2
Length = 560
Score = 32.3 bits (72), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 29/61 (47%), Gaps = 6/61 (9%)
Query: 26 MQTYALVWIDSSTKLCTRVDRAGAESPIWNEKFLFKVTPEFLSSETSAISVEIYA---SG 82
+ YA +W+ ++C D E P W ++ LF+ + L ET I +E Y SG
Sbjct: 267 LMMYATIWLREHNRVC---DILKQEHPEWGDEQLFQTSRLILIGETIKIVIEDYVQHLSG 323
Query: 83 Y 83
Y
Sbjct: 324 Y 324
>pdb|1WFJ|A Chain A, C2 Domain-Containing Protein From Putative Elicitor-
Responsive Gene
Length = 136
Score = 32.0 bits (71), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 17/58 (29%), Positives = 31/58 (53%), Gaps = 2/58 (3%)
Query: 6 LEIILISAQGLKSPSSKMRRMQTYALVWIDSSTKLCTRVDRAGAESPIWNEKFLFKVT 63
LE++L+SA+GL+ + + M Y + + + + G +P WNE F+F V+
Sbjct: 12 LEVVLVSAKGLED-ADFLNNMDPYVQLTCRTQDQKSNVAEGMGT-TPEWNETFIFTVS 67
>pdb|1DSY|A Chain A, C2 Domain From Protein Kinase C (Alpha) Complexed With
Ca2+ And Phosphatidylserine
Length = 139
Score = 30.8 bits (68), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 45/93 (48%), Gaps = 10/93 (10%)
Query: 8 IILISAQGLKSPSSKMRRMQTYALVWIDSSTKLCTRVDRAGAESPIWNEKFLFKVTPEFL 67
+I + GL P K++ + + +K T+ R+ +P WNE F FK+ P
Sbjct: 29 LIPMDPNGLSDPYVKLKLIPDPK-----NESKQKTKTIRSTL-NPQWNESFTFKLKP--- 79
Query: 68 SSETSAISVEIYA-SGYLRDYLIGTVRFLVSNI 99
S + +SVEI+ R+ +G++ F VS +
Sbjct: 80 SDKDRRLSVEIWDWDRTTRNDFMGSLSFGVSEL 112
>pdb|3GPE|A Chain A, Crystal Structure Analysis Of Pkc (Alpha)-C2 Domain
Complexed With Ca2+ And Ptdins(4,5)p2
pdb|3RDJ|A Chain A, Rat Pkc C2 Domain Apo
pdb|3TWY|A Chain A, Rat Pkc C2 Domain Bound To Pb
Length = 137
Score = 30.8 bits (68), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 45/93 (48%), Gaps = 10/93 (10%)
Query: 8 IILISAQGLKSPSSKMRRMQTYALVWIDSSTKLCTRVDRAGAESPIWNEKFLFKVTPEFL 67
+I + GL P K++ + + +K T+ R+ +P WNE F FK+ P
Sbjct: 28 LIPMDPNGLSDPYVKLKLIPDPK-----NESKQKTKTIRSTL-NPQWNESFTFKLKP--- 78
Query: 68 SSETSAISVEIYA-SGYLRDYLIGTVRFLVSNI 99
S + +SVEI+ R+ +G++ F VS +
Sbjct: 79 SDKDRRLSVEIWDWDRTTRNDFMGSLSFGVSEL 111
>pdb|2UZP|A Chain A, Crystal Structure Of The C2 Domain Of Human Protein Kinase
C Gamma.
pdb|2UZP|B Chain B, Crystal Structure Of The C2 Domain Of Human Protein Kinase
C Gamma.
pdb|2UZP|C Chain C, Crystal Structure Of The C2 Domain Of Human Protein Kinase
C Gamma
Length = 144
Score = 29.3 bits (64), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 43/93 (46%), Gaps = 10/93 (10%)
Query: 8 IILISAQGLKSPSSKMRRMQTYALVWIDSSTKLCTRVDRAGAESPIWNEKFLFKVTPEFL 67
+I + GL P K++ + + TK TR +A +P+WNE F+F + P
Sbjct: 32 LIPMDPNGLSDPYVKLKLIPDPR-----NLTKQKTRTVKATL-NPVWNETFVFNLKP--- 82
Query: 68 SSETSAISVEIYASGYL-RDYLIGTVRFLVSNI 99
+SVE++ R+ +G + F VS +
Sbjct: 83 GDVERRLSVEVWDWDRTSRNDFMGAMSFGVSEL 115
>pdb|4DNL|A Chain A, Crystal Structure Of A C2 Domain Of A Protein Kinase C
Alpha (Prkca) From Homo Sapiens At 1.90 A Resolution
Length = 140
Score = 29.3 bits (64), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 27/99 (27%), Positives = 45/99 (45%), Gaps = 10/99 (10%)
Query: 8 IILISAQGLKSPSSKMRRMQTYALVWIDSSTKLCTRVDRAGAESPIWNEKFLFKVTPEFL 67
+I GL P K++ + + +K T+ R+ +P WNE F FK+ P
Sbjct: 30 LIPXDPNGLSDPYVKLKLIPDPK-----NESKQKTKTIRSTL-NPQWNESFTFKLKP--- 80
Query: 68 SSETSAISVEIYA-SGYLRDYLIGTVRFLVSNISLSVAT 105
S + +SVEI+ R+ G++ F VS + A+
Sbjct: 81 SDKDRRLSVEIWDWDRTTRNDFXGSLSFGVSELXKXPAS 119
>pdb|2CJT|A Chain A, Structural Basis For A Munc13-1 Dimeric - Munc13-1 -
Rim Heterodimer Switch: C2-Domains As Versatile
Protein- Protein Interaction Modules
pdb|2CJT|B Chain B, Structural Basis For A Munc13-1 Dimeric - Munc13-1 -
Rim Heterodimer Switch: C2-Domains As Versatile
Protein- Protein Interaction Modules
pdb|2CJT|C Chain C, Structural Basis For A Munc13-1 Dimeric - Munc13-1 -
Rim Heterodimer Switch: C2-Domains As Versatile
Protein- Protein Interaction Modules
pdb|2CJT|D Chain D, Structural Basis For A Munc13-1 Dimeric - Munc13-1 -
Rim Heterodimer Switch: C2-Domains As Versatile
Protein- Protein Interaction Modules
Length = 131
Score = 28.1 bits (61), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 12/42 (28%), Positives = 23/42 (54%), Gaps = 5/42 (11%)
Query: 51 SPIWNEKFLFKVTPEFLSSETSAISVEIYASGYLRDYLIGTV 92
P W + F+F++ L ++VE++ G + D ++GTV
Sbjct: 45 QPSWEQDFMFEINRLDL-----GLTVEVWNKGLIWDTMVGTV 81
>pdb|2CJS|A Chain A, Structural Basis For A Munc13-1 Dimeric - Munc13-1 - Rim
Heterodimer Switch: C2-domains As Versatile Protein-
Protein Interaction Modules
pdb|2CJS|B Chain B, Structural Basis For A Munc13-1 Dimeric - Munc13-1 - Rim
Heterodimer Switch: C2-domains As Versatile Protein-
Protein Interaction Modules
Length = 167
Score = 28.1 bits (61), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 14/52 (26%), Positives = 26/52 (50%), Gaps = 5/52 (9%)
Query: 51 SPIWNEKFLFKVTPEFLSSETSAISVEIYASGYLRDYLIGTVRFLVSNISLS 102
P W + F+F++ L ++VE++ G + D ++GTV + I S
Sbjct: 54 QPSWEQDFMFEINRLDL-----GLTVEVWNKGLIWDTMVGTVWIPLRTIRQS 100
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.130 0.369
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,468,303
Number of Sequences: 62578
Number of extensions: 228145
Number of successful extensions: 384
Number of sequences better than 100.0: 35
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 34
Number of HSP's that attempted gapping in prelim test: 382
Number of HSP's gapped (non-prelim): 35
length of query: 254
length of database: 14,973,337
effective HSP length: 97
effective length of query: 157
effective length of database: 8,903,271
effective search space: 1397813547
effective search space used: 1397813547
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 50 (23.9 bits)