Query 047341
Match_columns 254
No_of_seqs 229 out of 1457
Neff 6.6
Searched_HMMs 46136
Date Fri Mar 29 10:11:23 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047341.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/047341hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd04016 C2_Tollip C2 domain pr 99.9 1.2E-23 2.6E-28 168.7 15.2 118 3-132 1-121 (121)
2 cd08681 C2_fungal_Inn1p-like C 99.9 1.7E-22 3.7E-27 159.2 13.5 118 4-132 1-118 (118)
3 cd04051 C2_SRC2_like C2 domain 99.9 2.3E-22 4.9E-27 160.2 12.9 123 5-128 1-125 (125)
4 cd04042 C2A_MCTP_PRT C2 domain 99.9 7.6E-22 1.6E-26 156.7 15.3 118 6-134 2-121 (121)
5 cd04019 C2C_MCTP_PRT_plant C2 99.9 1.5E-21 3.2E-26 161.9 15.1 125 5-135 1-134 (150)
6 cd08682 C2_Rab11-FIP_classI C2 99.9 4.7E-21 1E-25 153.3 14.2 120 6-130 1-125 (126)
7 cd04044 C2A_Tricalbin-like C2 99.9 6.2E-21 1.3E-25 150.9 13.9 122 3-134 1-124 (124)
8 cd04033 C2_NEDD4_NEDD4L C2 dom 99.9 9.5E-21 2.1E-25 152.2 14.6 122 5-133 1-133 (133)
9 cd08678 C2_C21orf25-like C2 do 99.9 2.1E-20 4.6E-25 149.6 16.0 119 6-137 1-124 (126)
10 cd04022 C2A_MCTP_PRT_plant C2 99.9 1.3E-20 2.7E-25 151.0 14.4 122 5-133 1-126 (127)
11 cd08379 C2D_MCTP_PRT_plant C2 99.9 1.3E-20 2.8E-25 152.2 13.9 112 5-128 1-125 (126)
12 cd08401 C2A_RasA2_RasA3 C2 dom 99.8 3.5E-20 7.6E-25 148.0 15.5 117 6-132 2-121 (121)
13 cd04015 C2_plant_PLD C2 domain 99.8 3E-20 6.5E-25 155.2 15.6 120 3-133 6-158 (158)
14 cd04046 C2_Calpain C2 domain p 99.8 5.1E-20 1.1E-24 147.7 15.5 120 2-135 1-124 (126)
15 cd08400 C2_Ras_p21A1 C2 domain 99.8 5.4E-20 1.2E-24 147.7 15.6 119 3-135 3-125 (126)
16 cd08377 C2C_MCTP_PRT C2 domain 99.8 9E-20 1.9E-24 143.6 14.9 116 4-133 1-119 (119)
17 cd08375 C2_Intersectin C2 doma 99.8 8.9E-20 1.9E-24 148.7 15.3 121 2-132 13-135 (136)
18 cd04036 C2_cPLA2 C2 domain pre 99.8 1E-19 2.2E-24 144.0 14.4 115 6-133 2-118 (119)
19 cd08378 C2B_MCTP_PRT_plant C2 99.8 1.1E-19 2.5E-24 145.1 14.0 117 6-133 2-120 (121)
20 cd08382 C2_Smurf-like C2 domai 99.8 1.8E-19 4E-24 143.8 14.3 114 6-130 2-122 (123)
21 KOG1030 Predicted Ca2+-depende 99.8 4.2E-20 9.1E-25 154.2 10.9 95 1-103 3-98 (168)
22 cd08376 C2B_MCTP_PRT C2 domain 99.8 3E-19 6.5E-24 140.3 14.9 114 5-133 1-115 (116)
23 cd04054 C2A_Rasal1_RasA4 C2 do 99.8 4.3E-19 9.4E-24 141.3 15.1 116 6-131 2-120 (121)
24 cd04024 C2A_Synaptotagmin-like 99.8 3.7E-19 8E-24 141.6 14.2 121 4-132 1-128 (128)
25 cd08395 C2C_Munc13 C2 domain t 99.8 2.7E-19 5.8E-24 143.3 13.2 105 5-117 1-112 (120)
26 cd04014 C2_PKC_epsilon C2 doma 99.8 7.5E-19 1.6E-23 141.6 15.7 119 1-134 1-130 (132)
27 cd08391 C2A_C2C_Synaptotagmin_ 99.8 3.8E-19 8.3E-24 140.0 13.6 115 4-132 1-121 (121)
28 cd08381 C2B_PI3K_class_II C2 d 99.8 1.8E-19 3.9E-24 144.1 11.4 104 3-115 12-121 (122)
29 cd04025 C2B_RasA1_RasA4 C2 dom 99.8 5.9E-19 1.3E-23 140.3 13.9 116 5-131 1-123 (123)
30 cd08373 C2A_Ferlin C2 domain f 99.8 1.6E-18 3.6E-23 138.6 15.3 117 10-137 2-120 (127)
31 cd08392 C2A_SLP-3 C2 domain fi 99.8 7.1E-19 1.5E-23 142.1 12.0 108 3-115 14-127 (128)
32 cd08677 C2A_Synaptotagmin-13 C 99.8 6.5E-19 1.4E-23 140.7 10.8 92 3-101 13-108 (118)
33 cd04017 C2D_Ferlin C2 domain f 99.8 3.2E-18 7E-23 138.7 15.0 126 5-135 2-134 (135)
34 cd04029 C2A_SLP-4_5 C2 domain 99.8 1.2E-18 2.7E-23 139.8 12.4 106 2-115 13-124 (125)
35 cd08393 C2A_SLP-1_2 C2 domain 99.8 9.4E-19 2E-23 140.3 11.0 105 3-115 14-124 (125)
36 cd08394 C2A_Munc13 C2 domain f 99.8 2.2E-18 4.8E-23 139.1 12.5 101 3-117 1-101 (127)
37 cd04040 C2D_Tricalbin-like C2 99.8 3.6E-18 7.8E-23 133.8 13.5 113 6-128 1-114 (115)
38 cd04028 C2B_RIM1alpha C2 domai 99.8 2.9E-18 6.3E-23 141.8 13.4 106 3-118 28-139 (146)
39 cd04027 C2B_Munc13 C2 domain s 99.8 5E-18 1.1E-22 136.3 14.1 112 5-130 2-127 (127)
40 cd04049 C2_putative_Elicitor-r 99.8 3.2E-18 6.9E-23 136.2 12.6 98 4-104 1-99 (124)
41 cd04039 C2_PSD C2 domain prese 99.8 3.2E-18 6.9E-23 134.4 12.3 95 4-104 1-100 (108)
42 cd08387 C2A_Synaptotagmin-8 C2 99.8 3.3E-18 7.2E-23 136.1 12.5 106 3-116 15-123 (124)
43 cd04050 C2B_Synaptotagmin-like 99.8 2.6E-18 5.7E-23 133.3 11.4 102 5-117 1-102 (105)
44 cd08680 C2_Kibra C2 domain fou 99.8 1.9E-18 4.2E-23 139.0 10.8 106 3-115 13-124 (124)
45 cd04041 C2A_fungal C2 domain f 99.8 2.8E-18 6E-23 134.6 11.1 96 4-102 1-100 (111)
46 cd04043 C2_Munc13_fungal C2 do 99.8 2.1E-17 4.6E-22 131.6 15.8 119 5-135 2-123 (126)
47 cd04045 C2C_Tricalbin-like C2 99.8 8E-18 1.7E-22 134.2 13.3 103 4-118 1-104 (120)
48 cd08385 C2A_Synaptotagmin-1-5- 99.8 4.6E-18 1E-22 135.2 11.9 105 3-115 15-122 (124)
49 cd04010 C2B_RasA3 C2 domain se 99.8 4.6E-18 1E-22 140.8 12.1 106 5-117 1-122 (148)
50 cd04030 C2C_KIAA1228 C2 domain 99.8 6.9E-18 1.5E-22 134.4 12.2 105 3-115 15-126 (127)
51 cd04021 C2_E3_ubiquitin_ligase 99.8 2.6E-17 5.6E-22 131.9 15.5 118 4-130 2-124 (125)
52 cd08685 C2_RGS-like C2 domain 99.8 3.6E-18 7.8E-23 136.2 10.5 103 3-115 11-119 (119)
53 cd08691 C2_NEDL1-like C2 domai 99.8 3.1E-17 6.7E-22 134.3 15.4 116 5-130 2-136 (137)
54 cd08688 C2_KIAA0528-like C2 do 99.8 7.3E-18 1.6E-22 132.0 11.1 106 6-117 1-109 (110)
55 cd08521 C2A_SLP C2 domain firs 99.8 9.3E-18 2E-22 132.8 11.6 105 3-115 13-123 (123)
56 cd08388 C2A_Synaptotagmin-4-11 99.8 1.7E-17 3.6E-22 133.8 13.0 107 3-115 15-126 (128)
57 cd08690 C2_Freud-1 C2 domain f 99.7 5.1E-17 1.1E-21 135.6 15.3 125 5-135 3-139 (155)
58 cd00275 C2_PLC_like C2 domain 99.7 6E-17 1.3E-21 128.7 15.0 117 4-132 2-127 (128)
59 cd04031 C2A_RIM1alpha C2 domai 99.7 1.9E-17 4E-22 131.4 11.4 104 3-115 15-124 (125)
60 cd04011 C2B_Ferlin C2 domain s 99.7 2.6E-17 5.6E-22 128.8 11.8 106 5-118 5-111 (111)
61 cd08389 C2A_Synaptotagmin-14_1 99.7 2E-17 4.3E-22 132.6 11.3 105 3-116 15-123 (124)
62 cd08386 C2A_Synaptotagmin-7 C2 99.7 3.3E-17 7.2E-22 130.2 12.6 106 3-116 15-124 (125)
63 KOG1028 Ca2+-dependent phospho 99.7 3.2E-17 6.9E-22 156.4 14.5 141 3-151 166-320 (421)
64 cd04052 C2B_Tricalbin-like C2 99.7 3.9E-17 8.4E-22 128.2 11.8 104 21-135 8-111 (111)
65 PLN03008 Phospholipase D delta 99.7 6.7E-17 1.5E-21 162.4 15.1 127 3-140 13-184 (868)
66 cd04009 C2B_Munc13-like C2 dom 99.7 4.2E-17 9.2E-22 131.9 11.0 99 3-103 15-120 (133)
67 cd08390 C2A_Synaptotagmin-15-1 99.7 1.1E-16 2.3E-21 126.8 13.0 105 3-115 13-121 (123)
68 cd04018 C2C_Ferlin C2 domain t 99.7 9.4E-17 2E-21 133.5 12.6 107 5-117 1-125 (151)
69 cd04013 C2_SynGAP_like C2 doma 99.7 2.6E-16 5.6E-21 130.2 15.1 120 4-139 11-145 (146)
70 cd04032 C2_Perforin C2 domain 99.7 8E-17 1.7E-21 130.2 11.6 92 2-100 26-118 (127)
71 cd04038 C2_ArfGAP C2 domain pr 99.7 9.9E-17 2.1E-21 132.4 12.0 91 4-103 2-93 (145)
72 cd08676 C2A_Munc13-like C2 dom 99.7 1E-16 2.2E-21 133.5 11.9 101 1-115 25-153 (153)
73 cd08383 C2A_RasGAP C2 domain ( 99.7 2.8E-16 6.1E-21 123.0 13.8 113 6-132 2-117 (117)
74 cd08406 C2B_Synaptotagmin-12 C 99.7 6.5E-17 1.4E-21 132.1 10.0 92 3-98 14-110 (136)
75 cd08407 C2B_Synaptotagmin-13 C 99.7 8.5E-17 1.8E-21 131.8 10.1 92 3-98 14-112 (138)
76 cd04037 C2E_Ferlin C2 domain f 99.7 1.2E-16 2.6E-21 127.9 10.5 119 5-135 1-121 (124)
77 cd08384 C2B_Rabphilin_Doc2 C2 99.7 1.5E-16 3.2E-21 128.1 10.8 92 3-98 12-108 (133)
78 cd04020 C2B_SLP_1-2-3-4 C2 dom 99.7 2.4E-16 5.2E-21 132.2 11.4 97 2-102 25-127 (162)
79 cd08408 C2B_Synaptotagmin-14_1 99.7 2.7E-16 5.8E-21 128.6 10.3 93 3-99 14-112 (138)
80 cd08409 C2B_Synaptotagmin-15 C 99.7 4.8E-16 1E-20 126.7 11.6 92 3-99 14-110 (137)
81 cd08404 C2B_Synaptotagmin-4 C2 99.7 3.4E-16 7.4E-21 126.8 10.2 92 3-98 14-110 (136)
82 cd08402 C2B_Synaptotagmin-1 C2 99.7 3.6E-16 7.9E-21 126.5 10.2 92 3-98 14-110 (136)
83 cd08405 C2B_Synaptotagmin-7 C2 99.7 3.2E-16 7E-21 126.8 9.8 93 3-99 14-111 (136)
84 cd04026 C2_PKC_alpha_gamma C2 99.7 7.3E-16 1.6E-20 123.7 11.8 105 4-118 13-122 (131)
85 cd08403 C2B_Synaptotagmin-3-5- 99.7 3.9E-16 8.4E-21 126.1 10.1 92 2-97 12-108 (134)
86 cd04048 C2A_Copine C2 domain f 99.7 1.2E-15 2.7E-20 120.8 12.5 98 9-116 5-113 (120)
87 cd08410 C2B_Synaptotagmin-17 C 99.7 6E-16 1.3E-20 125.6 10.5 91 2-96 12-107 (135)
88 cd08675 C2B_RasGAP C2 domain s 99.7 1.1E-15 2.4E-20 124.7 11.5 106 6-118 1-121 (137)
89 cd04035 C2A_Rabphilin_Doc2 C2 99.6 1.9E-15 4.1E-20 120.0 12.0 98 2-103 13-115 (123)
90 cd08686 C2_ABR C2 domain in th 99.6 1.6E-15 3.4E-20 121.1 10.8 80 6-98 1-92 (118)
91 cd00276 C2B_Synaptotagmin C2 d 99.6 1.5E-15 3.2E-20 121.5 10.5 93 2-98 12-109 (134)
92 cd08692 C2B_Tac2-N C2 domain s 99.6 2.7E-15 5.9E-20 122.5 10.4 92 3-99 13-110 (135)
93 KOG0696 Serine/threonine prote 99.6 4.4E-16 9.6E-21 146.1 3.8 105 3-117 179-288 (683)
94 PLN03200 cellulose synthase-in 99.6 4.2E-15 9.1E-20 160.8 11.6 120 3-134 1979-2101(2102)
95 cd04047 C2B_Copine C2 domain s 99.6 2.9E-14 6.3E-19 111.0 12.3 92 8-102 4-101 (110)
96 PF00168 C2: C2 domain; Inter 99.6 2.1E-14 4.5E-19 104.6 10.0 82 6-93 1-85 (85)
97 COG5038 Ca2+-dependent lipid-b 99.5 2.5E-13 5.5E-18 139.1 12.0 124 2-136 434-560 (1227)
98 smart00239 C2 Protein kinase C 99.4 2.1E-12 4.5E-17 95.7 11.4 93 5-103 1-96 (101)
99 cd08374 C2F_Ferlin C2 domain s 99.4 1.2E-12 2.7E-17 106.6 10.8 95 6-103 2-125 (133)
100 PLN02270 phospholipase D alpha 99.4 2E-12 4.4E-17 130.2 14.5 130 3-141 7-156 (808)
101 PLN02223 phosphoinositide phos 99.4 3.4E-12 7.3E-17 124.0 14.1 107 4-122 409-524 (537)
102 COG5038 Ca2+-dependent lipid-b 99.4 4.7E-12 1E-16 129.9 13.9 153 2-166 709-868 (1227)
103 KOG1011 Neurotransmitter relea 99.4 7.4E-13 1.6E-17 129.1 7.5 116 4-133 295-424 (1283)
104 cd00030 C2 C2 domain. The C2 d 99.4 7.6E-12 1.7E-16 91.7 11.1 89 6-100 1-90 (102)
105 PLN02952 phosphoinositide phos 99.4 8E-12 1.7E-16 123.3 14.0 117 4-132 470-596 (599)
106 KOG2059 Ras GTPase-activating 99.3 9.3E-12 2E-16 122.3 9.6 125 4-137 5-129 (800)
107 KOG0169 Phosphoinositide-speci 99.3 2.4E-11 5.3E-16 120.6 12.2 119 5-134 617-745 (746)
108 PLN02230 phosphoinositide phos 99.3 3.9E-11 8.4E-16 118.4 12.3 117 4-132 469-597 (598)
109 cd08689 C2_fungal_Pkc1p C2 dom 99.3 1.7E-11 3.6E-16 95.8 7.6 86 6-102 1-89 (109)
110 PLN02228 Phosphoinositide phos 99.3 7.9E-11 1.7E-15 115.7 14.1 120 4-135 431-563 (567)
111 PLN02222 phosphoinositide phos 99.2 1.5E-10 3.3E-15 114.0 14.4 117 4-132 452-580 (581)
112 KOG1028 Ca2+-dependent phospho 99.2 9.7E-11 2.1E-15 112.1 10.0 92 3-98 297-393 (421)
113 KOG1328 Synaptic vesicle prote 99.0 1.2E-10 2.7E-15 114.9 2.2 96 4-101 947-1049(1103)
114 KOG1264 Phospholipase C [Lipid 99.0 2.8E-09 6E-14 106.5 10.7 101 4-117 1065-1171(1267)
115 KOG1328 Synaptic vesicle prote 98.9 1.6E-10 3.4E-15 114.2 -0.2 124 6-140 116-308 (1103)
116 PLN02352 phospholipase D epsil 98.9 1E-08 2.2E-13 103.4 12.5 122 3-140 9-137 (758)
117 KOG1031 Predicted Ca2+-depende 98.8 1.5E-08 3.3E-13 98.5 8.7 124 4-132 3-135 (1169)
118 KOG1013 Synaptic vesicle prote 98.8 1.1E-09 2.3E-14 100.2 0.5 177 3-184 92-295 (362)
119 KOG2059 Ras GTPase-activating 98.5 3.9E-07 8.5E-12 90.3 7.4 124 9-139 136-282 (800)
120 KOG1265 Phospholipase C [Lipid 98.3 2.6E-06 5.7E-11 86.3 10.4 102 3-124 702-812 (1189)
121 KOG0905 Phosphoinositide 3-kin 98.2 1.2E-06 2.7E-11 90.8 4.8 106 3-116 1523-1634(1639)
122 KOG1013 Synaptic vesicle prote 98.0 1E-05 2.3E-10 74.4 5.3 87 4-94 233-324 (362)
123 KOG1326 Membrane-associated pr 97.9 7E-06 1.5E-10 84.1 3.3 88 5-98 614-703 (1105)
124 cd08684 C2A_Tac2-N C2 domain f 97.8 3E-05 6.4E-10 59.1 4.7 90 7-100 2-93 (103)
125 PLN02964 phosphatidylserine de 97.7 6.7E-05 1.5E-09 75.4 6.0 88 3-103 53-141 (644)
126 KOG1011 Neurotransmitter relea 97.7 0.00015 3.2E-09 72.1 7.9 106 4-117 1125-1237(1283)
127 KOG3837 Uncharacterized conser 97.6 3.6E-05 7.7E-10 72.8 3.3 125 5-135 368-505 (523)
128 KOG2060 Rab3 effector RIM1 and 97.4 0.00012 2.6E-09 68.5 3.4 107 3-118 268-380 (405)
129 PF10358 NT-C2: N-terminal C2 97.2 0.026 5.6E-07 45.5 14.8 127 5-139 8-141 (143)
130 cd08683 C2_C2cd3 C2 domain fou 97.2 0.00089 1.9E-08 54.5 5.7 97 6-103 1-134 (143)
131 KOG1326 Membrane-associated pr 97.0 0.00017 3.8E-09 74.2 0.5 116 6-130 208-329 (1105)
132 PF15627 CEP76-C2: CEP76 C2 do 96.3 0.074 1.6E-06 44.6 11.1 129 4-135 9-152 (156)
133 cd08398 C2_PI3K_class_I_alpha 96.3 0.044 9.4E-07 46.0 9.8 88 4-98 8-105 (158)
134 PF11618 DUF3250: Protein of u 96.3 0.025 5.5E-07 44.5 7.7 101 29-133 2-105 (107)
135 cd08693 C2_PI3K_class_I_beta_d 96.0 0.061 1.3E-06 45.6 9.6 74 4-82 8-86 (173)
136 KOG1452 Predicted Rho GTPase-a 96.0 0.015 3.2E-07 53.8 5.9 116 3-135 50-169 (442)
137 cd08380 C2_PI3K_like C2 domain 95.1 0.2 4.3E-06 41.3 9.2 91 4-98 8-106 (156)
138 KOG1327 Copine [Signal transdu 95.0 0.044 9.5E-07 54.0 5.5 87 11-100 143-235 (529)
139 cd04012 C2A_PI3K_class_II C2 d 94.9 0.16 3.5E-06 42.8 8.3 93 3-97 7-117 (171)
140 cd08399 C2_PI3K_class_I_gamma 94.8 0.45 9.7E-06 40.7 10.7 75 4-82 10-88 (178)
141 cd08397 C2_PI3K_class_III C2 d 94.6 0.18 3.8E-06 42.3 7.7 70 25-96 29-104 (159)
142 PF15625 CC2D2AN-C2: CC2D2A N- 94.4 0.23 5E-06 41.8 7.9 72 25-101 36-108 (168)
143 PF12416 DUF3668: Cep120 prote 94.2 0.84 1.8E-05 42.9 12.0 124 6-137 2-136 (340)
144 PF14429 DOCK-C2: C2 domain in 93.9 0.28 6E-06 41.7 7.5 57 39-98 60-120 (184)
145 cd08687 C2_PKN-like C2 domain 93.7 0.59 1.3E-05 36.0 8.1 86 24-132 7-92 (98)
146 cd08695 C2_Dock-B C2 domains f 93.4 0.52 1.1E-05 40.8 8.3 57 38-97 53-112 (189)
147 cd08694 C2_Dock-A C2 domains f 93.1 0.51 1.1E-05 41.0 8.0 57 38-97 53-114 (196)
148 PF00792 PI3K_C2: Phosphoinosi 92.2 0.88 1.9E-05 36.9 7.9 57 41-98 23-84 (142)
149 cd08679 C2_DOCK180_related C2 89.5 1.6 3.4E-05 37.0 7.2 55 40-98 55-115 (178)
150 smart00142 PI3K_C2 Phosphoinos 87.4 5.1 0.00011 30.6 8.2 74 6-82 13-91 (100)
151 cd08696 C2_Dock-C C2 domains f 85.4 3.7 8.1E-05 35.1 7.1 57 38-97 54-117 (179)
152 KOG1327 Copine [Signal transdu 81.4 4 8.7E-05 40.5 6.4 59 40-103 43-106 (529)
153 cd08697 C2_Dock-D C2 domains f 79.9 8.7 0.00019 33.1 7.3 57 39-98 57-123 (185)
154 KOG1329 Phospholipase D1 [Lipi 76.0 4 8.7E-05 42.7 4.8 102 26-136 138-243 (887)
155 PF14924 DUF4497: Protein of u 68.1 20 0.00043 27.9 6.2 77 57-133 12-104 (112)
156 KOG4269 Rac GTPase-activating 63.0 3.6 7.8E-05 43.1 1.2 85 3-100 758-857 (1112)
157 PF14186 Aida_C2: Cytoskeletal 60.3 45 0.00097 27.7 7.0 93 5-102 14-115 (147)
158 PTZ00447 apical membrane antig 55.6 1.5E+02 0.0033 28.4 10.4 99 25-133 73-173 (508)
159 KOG0694 Serine/threonine prote 53.6 9.1 0.0002 39.1 2.2 51 25-82 27-77 (694)
160 KOG3543 Ca2+-dependent activat 47.9 1.6E+02 0.0035 30.4 9.8 114 5-135 342-461 (1218)
161 cd08406 C2B_Synaptotagmin-12 C 39.8 24 0.00051 28.4 2.3 14 124-137 2-15 (136)
162 PF07162 B9-C2: Ciliary basal 37.7 2.4E+02 0.0051 23.4 11.3 83 6-96 4-101 (168)
163 cd08407 C2B_Synaptotagmin-13 C 34.1 37 0.0008 27.5 2.6 15 123-137 1-15 (138)
164 KOG1032 Uncharacterized conser 33.3 54 0.0012 33.3 4.1 55 22-82 114-168 (590)
165 PF08151 FerI: FerI (NUC094) d 32.2 1.3E+02 0.0028 21.9 4.9 36 108-143 14-52 (72)
166 KOG2419 Phosphatidylserine dec 31.5 13 0.00029 37.9 -0.5 54 8-64 284-340 (975)
167 KOG0904 Phosphatidylinositol 3 29.6 1.2E+02 0.0027 32.3 5.9 72 4-81 343-421 (1076)
168 cd05137 RasGAP_CLA2_BUD2 CLA2/ 27.8 83 0.0018 30.3 4.2 48 88-139 1-50 (395)
169 PF12416 DUF3668: Cep120 prote 23.1 4E+02 0.0088 25.1 7.7 92 5-103 193-297 (340)
170 PF15084 DUF4550: Domain of un 21.7 1.1E+02 0.0024 23.8 3.1 53 30-82 30-83 (99)
No 1
>cd04016 C2_Tollip C2 domain present in Toll-interacting protein (Tollip). Tollip is a part of the Interleukin-1 receptor (IL-1R) signaling pathway. Tollip is proposed to link serine/threonine kinase IRAK to IL-1Rs as well as inhibiting phosphorylation of IRAK. There is a single C2 domain present in Tollip. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice varian
Probab=99.91 E-value=1.2e-23 Score=168.66 Aligned_cols=118 Identities=17% Similarity=0.274 Sum_probs=98.5
Q ss_pred ccEEEEEEEeeeCCCCCCCCCCCCCeEEEEEECCcCeEEeEeecCCCCCCeeceEEEEEecCCCccCCCcEEEEEEEecC
Q 047341 3 TQILEIILISAQGLKSPSSKMRRMQTYALVWIDSSTKLCTRVDRAGAESPIWNEKFLFKVTPEFLSSETSAISVEIYASG 82 (254)
Q Consensus 3 ~g~L~V~VisA~~L~~~~d~~G~~DPYV~V~l~~~~k~rTkv~k~gt~NP~WNE~f~F~v~~~~l~~~~~~L~veV~D~d 82 (254)
.|+|+|+|++|++|++. + +|++||||+|.+++. +++|+++.+++.||+|||+|.|.+.. ....|.|+|||++
T Consensus 1 ~g~L~v~v~~Ak~l~~~-~-~g~sDPYv~i~lg~~-~~kT~v~~~~~~nP~WNe~F~f~v~~-----~~~~l~~~V~d~d 72 (121)
T cd04016 1 VGRLSITVVQAKLVKNY-G-LTRMDPYCRIRVGHA-VYETPTAYNGAKNPRWNKTIQCTLPE-----GVDSIYIEIFDER 72 (121)
T ss_pred CcEEEEEEEEccCCCcC-C-CCCCCceEEEEECCE-EEEeEEccCCCCCCccCeEEEEEecC-----CCcEEEEEEEeCC
Confidence 47999999999999887 5 799999999999764 67999988778999999999999976 3568999999999
Q ss_pred -CCCCceeEEEEEeCcc-ccccCCCCCCeeEEEEeeCCCC-CcceEEEEEEEE
Q 047341 83 -YLRDYLIGTVRFLVSN-ISLSVATKTPSFTAFQIRRPSG-RFQGVLSIGSML 132 (254)
Q Consensus 83 -~~~D~~LG~~~IpL~~-l~~~~~~~~~~~~~~~L~~~~g-~~~G~I~lsl~f 132 (254)
+.+|++||.+.|+|.. +..+.. ...||+|...++ ...|.|+|+++|
T Consensus 73 ~~~~dd~iG~~~i~l~~~~~~g~~----~~~W~~L~~~~~~~~~g~i~l~l~y 121 (121)
T cd04016 73 AFTMDERIAWTHITIPESVFNGET----LDDWYSLSGKQGEDKEGMINLVFSY 121 (121)
T ss_pred CCcCCceEEEEEEECchhccCCCC----ccccEeCcCccCCCCceEEEEEEeC
Confidence 5679999999999964 554432 357888875433 468999999987
No 2
>cd08681 C2_fungal_Inn1p-like C2 domain found in fungal Ingression 1 (Inn1) proteins. Saccharomyces cerevisiae Inn1 associates with the contractile actomyosin ring at the end of mitosis and is needed for cytokinesis. The C2 domain of Inn1, located at the N-terminus, is required for ingression of the plasma membrane. The C-terminus is relatively unstructured and contains eight PXXP motifs that are thought to mediate interaction of Inn1 with other proteins with SH3 domains in the cytokinesis proteins Hof1 (an F-BAR protein) and Cyk3 (whose overexpression can restore primary septum formation in Inn1Delta cells) as well as recruiting Inn1 to the bud-neck by binding to Cyk3. Inn1 and Cyk3 appear to cooperate in activating chitin synthase Chs2 for primary septum formation, which allows coordination of actomyosin ring contraction with ingression of the cleavage furrow. It is thought that the C2 domain of Inn1 helps to preserve the link between the actomyosin ring and the plasma membrane, contr
Probab=99.89 E-value=1.7e-22 Score=159.23 Aligned_cols=118 Identities=19% Similarity=0.364 Sum_probs=100.5
Q ss_pred cEEEEEEEeeeCCCCCCCCCCCCCeEEEEEECCcCeEEeEeecCCCCCCeeceEEEEEecCCCccCCCcEEEEEEEecCC
Q 047341 4 QILEIILISAQGLKSPSSKMRRMQTYALVWIDSSTKLCTRVDRAGAESPIWNEKFLFKVTPEFLSSETSAISVEIYASGY 83 (254)
Q Consensus 4 g~L~V~VisA~~L~~~~d~~G~~DPYV~V~l~~~~k~rTkv~k~gt~NP~WNE~f~F~v~~~~l~~~~~~L~veV~D~d~ 83 (254)
|.|+|+|++|++|++. +..+.+||||+|.+++. +.+|+++.+++.||+|||.|.|.+... ....|.|+|||++.
T Consensus 1 g~L~V~v~~A~~L~~~-~~~~~~dpyv~v~~~~~-~~kT~~~~~~~~nP~Wne~f~f~v~~~----~~~~l~i~v~d~~~ 74 (118)
T cd08681 1 GTLVVVVLKARNLPNK-RKLDKQDPYCVLRIGGV-TKKTKTDFRGGQHPEWDEELRFEITED----KKPILKVAVFDDDK 74 (118)
T ss_pred CEEEEEEEEccCCCCC-CcCCCCCceEEEEECCC-ccccccccCCCCCCccCceEEEEecCC----CCCEEEEEEEeCCC
Confidence 6899999999999998 78899999999999864 568888766689999999999999863 36789999999986
Q ss_pred CCCceeEEEEEeCccccccCCCCCCeeEEEEeeCCCCCcceEEEEEEEE
Q 047341 84 LRDYLIGTVRFLVSNISLSVATKTPSFTAFQIRRPSGRFQGVLSIGSML 132 (254)
Q Consensus 84 ~~D~~LG~~~IpL~~l~~~~~~~~~~~~~~~L~~~~g~~~G~I~lsl~f 132 (254)
.+|++||++.+++.++..+.. ...||+|.. +++..|+|+|+++|
T Consensus 75 ~~~~~iG~~~~~l~~~~~~~~----~~~w~~L~~-~~~~~G~i~l~l~f 118 (118)
T cd08681 75 RKPDLIGDTEVDLSPALKEGE----FDDWYELTL-KGRYAGEVYLELTF 118 (118)
T ss_pred CCCcceEEEEEecHHHhhcCC----CCCcEEecc-CCcEeeEEEEEEEC
Confidence 569999999999999876532 246788865 56789999999987
No 3
>cd04051 C2_SRC2_like C2 domain present in Soybean genes Regulated by Cold 2 (SRC2)-like proteins. SRC2 production is a response to pathogen infiltration. The initial response of increased Ca2+ concentrations are coupled to downstream signal transduction pathways via calcium binding proteins. SRC2 contains a single C2 domain which localizes to the plasma membrane and is involved in Ca2+ dependent protein binding. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such
Probab=99.89 E-value=2.3e-22 Score=160.25 Aligned_cols=123 Identities=40% Similarity=0.673 Sum_probs=103.7
Q ss_pred EEEEEEEeeeCCCCCCCCCCCCCeEEEEEECCcCeEEeEeecCCCCCCeeceEEEEEecCCCccCCCcEEEEEEEecCC-
Q 047341 5 ILEIILISAQGLKSPSSKMRRMQTYALVWIDSSTKLCTRVDRAGAESPIWNEKFLFKVTPEFLSSETSAISVEIYASGY- 83 (254)
Q Consensus 5 ~L~V~VisA~~L~~~~d~~G~~DPYV~V~l~~~~k~rTkv~k~gt~NP~WNE~f~F~v~~~~l~~~~~~L~veV~D~d~- 83 (254)
+|+|+|++|++|+.. +..+++||||+|++++..+.+|+++++++.||.|||.|.|.+....+......|.|+|||++.
T Consensus 1 ~L~V~V~sA~~L~~~-~~~~~~dpYv~v~~~~~~~~~T~~~~~~~~~P~Wne~f~f~v~~~~~~~~~~~l~~~v~d~~~~ 79 (125)
T cd04051 1 TLEITIISAEDLKNV-NLFGKMKVYAVVWIDPSHKQSTPVDRDGGTNPTWNETLRFPLDERLLQQGRLALTIEVYCERPS 79 (125)
T ss_pred CEEEEEEEcccCCCC-CcccCCceEEEEEECCCcccccccccCCCCCCCCCCEEEEEcChHhcccCccEEEEEEEECCCC
Confidence 589999999999998 788999999999998756779999876689999999999999873211236899999999984
Q ss_pred CCCceeEEEEEeCccccccCCC-CCCeeEEEEeeCCCCCcceEEEE
Q 047341 84 LRDYLIGTVRFLVSNISLSVAT-KTPSFTAFQIRRPSGRFQGVLSI 128 (254)
Q Consensus 84 ~~D~~LG~~~IpL~~l~~~~~~-~~~~~~~~~L~~~~g~~~G~I~l 128 (254)
.+|++||++.|+|.++..+... ......+|+|..++|+++|+|+|
T Consensus 80 ~~~~~lG~~~i~l~~l~~~~~~~~~~~~~~~~l~~~~g~~~G~~~~ 125 (125)
T cd04051 80 LGDKLIGEVRVPLKDLLDGASPAGELRFLSYQLRRPSGKPQGVLNF 125 (125)
T ss_pred CCCCcEEEEEEEHHHhhcccCCCCcceeEEEEeECCCCCcCeEEeC
Confidence 6799999999999999876642 12357899999889999999985
No 4
>cd04042 C2A_MCTP_PRT C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protein
Probab=99.88 E-value=7.6e-22 Score=156.67 Aligned_cols=118 Identities=18% Similarity=0.299 Sum_probs=102.0
Q ss_pred EEEEEEeeeCCCCCCCCCCCCCeEEEEEECCcCeEEeEeecCCCCCCeeceEEEEEecCCCccCCCcEEEEEEEecCC-C
Q 047341 6 LEIILISAQGLKSPSSKMRRMQTYALVWIDSSTKLCTRVDRAGAESPIWNEKFLFKVTPEFLSSETSAISVEIYASGY-L 84 (254)
Q Consensus 6 L~V~VisA~~L~~~~d~~G~~DPYV~V~l~~~~k~rTkv~k~gt~NP~WNE~f~F~v~~~~l~~~~~~L~veV~D~d~-~ 84 (254)
|+|+|++|++|+.. +..|.+||||++.+++...++|+++++ +.||+|||.|.|.+.. ....|.|+|||++. .
T Consensus 2 L~v~v~~a~~L~~~-d~~g~~Dpyv~v~~~~~~~~kT~~~~~-t~nP~Wne~f~f~v~~-----~~~~l~~~v~D~d~~~ 74 (121)
T cd04042 2 LDIHLKEGRNLAAR-DRGGTSDPYVKFKYGGKTVYKSKTIYK-NLNPVWDEKFTLPIED-----VTQPLYIKVFDYDRGL 74 (121)
T ss_pred eEEEEEEeeCCCCc-CCCCCCCCeEEEEECCEEEEEeeeccC-CCCCccceeEEEEecC-----CCCeEEEEEEeCCCCC
Confidence 89999999999998 788999999999998766789999875 8999999999999875 36789999999994 4
Q ss_pred CCceeEEEEEeCccccccCCCCCCeeEEEEeeCCCC-CcceEEEEEEEEEe
Q 047341 85 RDYLIGTVRFLVSNISLSVATKTPSFTAFQIRRPSG-RFQGVLSIGSMLID 134 (254)
Q Consensus 85 ~D~~LG~~~IpL~~l~~~~~~~~~~~~~~~L~~~~g-~~~G~I~lsl~f~p 134 (254)
+|++||.+.+++.++..+.. ...+++|..+++ +..|+|+|.++|.|
T Consensus 75 ~~~~iG~~~~~l~~l~~~~~----~~~~~~L~~~~~~~~~G~l~l~~~~~~ 121 (121)
T cd04042 75 TDDFMGSAFVDLSTLELNKP----TEVKLKLEDPNSDEDLGYISLVVTLTP 121 (121)
T ss_pred CCcceEEEEEEHHHcCCCCC----eEEEEECCCCCCccCceEEEEEEEECC
Confidence 79999999999999886543 457889976543 67999999999975
No 5
>cd04019 C2C_MCTP_PRT_plant C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates
Probab=99.88 E-value=1.5e-21 Score=161.89 Aligned_cols=125 Identities=21% Similarity=0.326 Sum_probs=103.7
Q ss_pred EEEEEEEeeeCCCCCCCCCCCCCeEEEEEECCcCeEEeEeecCCCCCCeeceEEEEEecCCCccCCCcEEEEEEEecC-C
Q 047341 5 ILEIILISAQGLKSPSSKMRRMQTYALVWIDSSTKLCTRVDRAGAESPIWNEKFLFKVTPEFLSSETSAISVEIYASG-Y 83 (254)
Q Consensus 5 ~L~V~VisA~~L~~~~d~~G~~DPYV~V~l~~~~k~rTkv~k~gt~NP~WNE~f~F~v~~~~l~~~~~~L~veV~D~d-~ 83 (254)
.|+|+|++|++|++. +..|.+||||+|.+++ ++.+|++..+++.||+|||.|.|.+... ....|.|+|||++ .
T Consensus 1 ~L~V~Vi~A~~L~~~-d~~g~sDPYV~v~l~~-~~~kTk~~~~~t~nP~WNE~F~f~v~~~----~~~~l~v~V~d~~~~ 74 (150)
T cd04019 1 YLRVTVIEAQDLVPS-DKNRVPEVFVKAQLGN-QVLRTRPSQTRNGNPSWNEELMFVAAEP----FEDHLILSVEDRVGP 74 (150)
T ss_pred CEEEEEEEeECCCCC-CCCCCCCeEEEEEECC-EEeeeEeccCCCCCCcccCcEEEEecCc----cCCeEEEEEEEecCC
Confidence 389999999999998 8889999999999987 4679998876579999999999999752 2578999999998 4
Q ss_pred CCCceeEEEEEeCccccccCCCCCCeeEEEEeeCCCC--------CcceEEEEEEEEEeC
Q 047341 84 LRDYLIGTVRFLVSNISLSVATKTPSFTAFQIRRPSG--------RFQGVLSIGSMLIDG 135 (254)
Q Consensus 84 ~~D~~LG~~~IpL~~l~~~~~~~~~~~~~~~L~~~~g--------~~~G~I~lsl~f~p~ 135 (254)
.+|++||++.|||+++..+...+.....||+|..+.+ +..|+|+|.++|.+.
T Consensus 75 ~~dd~lG~v~i~L~~l~~~~~~~~~~~~W~~L~~~~~~~~~~k~~k~~g~l~l~i~~~~~ 134 (150)
T cd04019 75 NKDEPLGRAVIPLNDIERRVDDRPVPSRWFSLERPGGAMEQKKKRKFASRIHLRLCLDGG 134 (150)
T ss_pred CCCCeEEEEEEEHHHCcccCCCCccCCceEECcCCCCcccccccCcccccEEEEEEecCc
Confidence 5799999999999998765322233468999986543 568999999999854
No 6
>cd08682 C2_Rab11-FIP_classI C2 domain found in Rab11-family interacting proteins (FIP) class I. Rab GTPases recruit various effector proteins to organelles and vesicles. Rab11-family interacting proteins (FIPs) are involved in mediating the role of Rab11. FIPs can be divided into three classes: class I FIPs (Rip11a, Rip11b, RCP, and FIP2) which contain a C2 domain after N-terminus of the protein, class II FIPs (FIP3 and FIP4) which contain two EF-hands and a proline rich region, and class III FIPs (FIP1) which exhibits no homology to known protein domains. All FIP proteins contain a highly conserved, 20-amino acid motif at the C-terminus of the protein, known as Rab11/25 binding domain (RBD). Class I FIPs are thought to bind to endocytic membranes via their C2 domain, which interacts directly with phospholipids. Class II FIPs do not have any membrane binding domains leaving much to speculate about the mechanism involving FIP3 and FIP4 interactions with endocytic membranes. The member
Probab=99.86 E-value=4.7e-21 Score=153.27 Aligned_cols=120 Identities=15% Similarity=0.337 Sum_probs=96.0
Q ss_pred EEEEEEeeeCCCCCCCCCCCCCeEEEEEECCcCeEEeEeecCCCCCCeeceEEEEEecCCCc-cCCCcEEEEEEEecC-C
Q 047341 6 LEIILISAQGLKSPSSKMRRMQTYALVWIDSSTKLCTRVDRAGAESPIWNEKFLFKVTPEFL-SSETSAISVEIYASG-Y 83 (254)
Q Consensus 6 L~V~VisA~~L~~~~d~~G~~DPYV~V~l~~~~k~rTkv~k~gt~NP~WNE~f~F~v~~~~l-~~~~~~L~veV~D~d-~ 83 (254)
|+|+|++|+||+.. +..|.+||||+|.+++. +++|+++++ +.||+|||+|.|.+..... ......|.|+|||++ +
T Consensus 1 ~~V~V~~A~~L~~~-d~~g~~dpYv~v~l~~~-~~kT~v~~~-t~nP~Wne~f~F~v~~~~~~~~~~~~l~~~v~d~~~~ 77 (126)
T cd08682 1 VQVTVLQARGLLCK-GKSGTNDAYVIIQLGKE-KYSTSVKEK-TTSPVWKEECSFELPGLLSGNGNRATLQLTVMHRNLL 77 (126)
T ss_pred CEEEEEECcCCcCC-CCCcCCCceEEEEECCe-eeeeeeecC-CCCCEeCceEEEEecCcccCCCcCCEEEEEEEEcccc
Confidence 58999999999988 78899999999999754 679999876 8999999999999976200 013678999999998 4
Q ss_pred CCCceeEEEEEeCccccccCCCCCCeeEEEEeeCCC---CCcceEEEEEE
Q 047341 84 LRDYLIGTVRFLVSNISLSVATKTPSFTAFQIRRPS---GRFQGVLSIGS 130 (254)
Q Consensus 84 ~~D~~LG~~~IpL~~l~~~~~~~~~~~~~~~L~~~~---g~~~G~I~lsl 130 (254)
.+|++||++.|+|.++..... .....||+|.... .+..|+|+|++
T Consensus 78 ~~d~~iG~~~i~l~~l~~~~~--~~~~~W~~L~~~~~~~~~~~Gei~l~~ 125 (126)
T cd08682 78 GLDKFLGQVSIPLNDLDEDKG--RRRTRWFKLESKPGKDDKERGEIEVDI 125 (126)
T ss_pred CCCceeEEEEEEHHHhhccCC--CcccEEEECcCCCCCCccccceEEEEe
Confidence 569999999999999873221 2245899997432 35689999987
No 7
>cd04044 C2A_Tricalbin-like C2 domain first repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.86 E-value=6.2e-21 Score=150.87 Aligned_cols=122 Identities=22% Similarity=0.321 Sum_probs=100.0
Q ss_pred ccEEEEEEEeeeCCCCCCCCCCCCCeEEEEEECC-cCeEEeEeecCCCCCCeeceEEEEEecCCCccCCCcEEEEEEEec
Q 047341 3 TQILEIILISAQGLKSPSSKMRRMQTYALVWIDS-STKLCTRVDRAGAESPIWNEKFLFKVTPEFLSSETSAISVEIYAS 81 (254)
Q Consensus 3 ~g~L~V~VisA~~L~~~~d~~G~~DPYV~V~l~~-~~k~rTkv~k~gt~NP~WNE~f~F~v~~~~l~~~~~~L~veV~D~ 81 (254)
.|.|+|+|++|++|+......+.+||||+|.+++ ....+|+++++ +.||.|||.|.|.+.. ....|.|+|||+
T Consensus 1 ~g~l~v~v~~a~~L~~~~~~~~~~dpyv~v~~~~~~~~~kT~~~~~-~~~P~Wne~~~~~v~~-----~~~~l~~~v~d~ 74 (124)
T cd04044 1 IGVLAVTIKSARGLKGSDIIGGTVDPYVTFSISNRRELARTKVKKD-TSNPVWNETKYILVNS-----LTEPLNLTVYDF 74 (124)
T ss_pred CeEEEEEEEcccCCCcccccCCCCCCeEEEEECCCCcceEeeeecC-CCCCcceEEEEEEeCC-----CCCEEEEEEEec
Confidence 4789999999999997522446799999999987 46789999875 9999999999999974 478999999999
Q ss_pred C-CCCCceeEEEEEeCccccccCCCCCCeeEEEEeeCCCCCcceEEEEEEEEEe
Q 047341 82 G-YLRDYLIGTVRFLVSNISLSVATKTPSFTAFQIRRPSGRFQGVLSIGSMLID 134 (254)
Q Consensus 82 d-~~~D~~LG~~~IpL~~l~~~~~~~~~~~~~~~L~~~~g~~~G~I~lsl~f~p 134 (254)
+ ..+|++||.+.++|.++...... ...++.+. .+++.+|+|+++++|.|
T Consensus 75 ~~~~~d~~iG~~~~~l~~l~~~~~~---~~~~~~~~-~~~k~~G~i~~~l~~~p 124 (124)
T cd04044 75 NDKRKDKLIGTAEFDLSSLLQNPEQ---ENLTKNLL-RNGKPVGELNYDLRFFP 124 (124)
T ss_pred CCCCCCceeEEEEEEHHHhccCccc---cCcchhhh-cCCccceEEEEEEEeCC
Confidence 8 45789999999999998866531 12234443 47788999999999986
No 8
>cd04033 C2_NEDD4_NEDD4L C2 domain present in the Human neural precursor cell-expressed, developmentally down-regulated 4 (NEDD4) and NEDD4-like (NEDD4L/NEDD42). Nedd4 and Nedd4-2 are two of the nine members of the Human Nedd4 family. All vertebrates appear to have both Nedd4 and Nedd4-2 genes. They are thought to participate in the regulation of epithelial Na+ channel (ENaC) activity. They also have identical specificity for ubiquitin conjugating enzymes (E2). Nedd4 and Nedd4-2 are composed of a C2 domain, 2-4 WW domains, and a ubiquitin ligase Hect domain. Their WW domains can bind PPxY (PY) or LPSY motifs, and in vitro studies suggest that WW3 and WW4 of both proteins bind PY motifs in the key substrates, with WW3 generally exhibiting higher affinity. Most Nedd4 family members, especially Nedd4-2, also have multiple splice variants, which might play different roles in regulating their substrates. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.86 E-value=9.5e-21 Score=152.24 Aligned_cols=122 Identities=20% Similarity=0.411 Sum_probs=101.2
Q ss_pred EEEEEEEeeeCCCCCCCCCCCCCeEEEEEECCc------CeEEeEeecCCCCCCeeceEEEEEecCCCccCCCcEEEEEE
Q 047341 5 ILEIILISAQGLKSPSSKMRRMQTYALVWIDSS------TKLCTRVDRAGAESPIWNEKFLFKVTPEFLSSETSAISVEI 78 (254)
Q Consensus 5 ~L~V~VisA~~L~~~~d~~G~~DPYV~V~l~~~------~k~rTkv~k~gt~NP~WNE~f~F~v~~~~l~~~~~~L~veV 78 (254)
.|+|+|++|++|+.. +..|.+||||+|.+.+. .+.+|++.++ +.||+|||+|.|.+.. ....|.|+|
T Consensus 1 ~L~v~Vi~a~~L~~~-d~~~~~Dpyv~v~~~~~~~~~~~~~~kT~v~~~-t~nP~Wne~f~f~~~~-----~~~~l~~~v 73 (133)
T cd04033 1 ILRVKVLAGIDLAKK-DIFGASDPYVKISLYDPDGNGEIDSVQTKTIKK-TLNPKWNEEFFFRVNP-----REHRLLFEV 73 (133)
T ss_pred CEEEEEEEeECCCcc-cCCCCcCcEEEEEEECCCCCCcccceeeeEEcC-CCCCcEeeEEEEEEcC-----CCCEEEEEE
Confidence 489999999999988 78899999999999754 2568998875 9999999999999975 357899999
Q ss_pred EecC-CCCCceeEEEEEeCccccccCCCC--CCeeEEEEeeCC--CCCcceEEEEEEEEE
Q 047341 79 YASG-YLRDYLIGTVRFLVSNISLSVATK--TPSFTAFQIRRP--SGRFQGVLSIGSMLI 133 (254)
Q Consensus 79 ~D~d-~~~D~~LG~~~IpL~~l~~~~~~~--~~~~~~~~L~~~--~g~~~G~I~lsl~f~ 133 (254)
||++ ..+|++||.+.|++.++....+.+ .....||+|..+ .++..|+|+|++.|.
T Consensus 74 ~d~~~~~~~~~iG~~~i~l~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~G~l~~~~~~~ 133 (133)
T cd04033 74 FDENRLTRDDFLGQVEVPLNNLPTETPGNERRYTFKDYLLRPRSSKSRVKGHLRLYMAYL 133 (133)
T ss_pred EECCCCCCCCeeEEEEEEHHHCCCcCccccccccchheeeeecCCCCcceeEEEEEEeeC
Confidence 9999 457899999999999988765421 234678888753 567899999999984
No 9
>cd08678 C2_C21orf25-like C2 domain found in the Human chromosome 21 open reading frame 25 (C21orf25) protein. The members in this cd are named after the Human C21orf25 which contains a single C2 domain. Several other members contain a C1 domain downstream of the C2 domain. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a
Probab=99.86 E-value=2.1e-20 Score=149.60 Aligned_cols=119 Identities=18% Similarity=0.423 Sum_probs=99.0
Q ss_pred EEEEEEeeeCCCCCCCCCCCCCeEEEEEECC-cCeEEeEeecCCCCCCeeceEEEEEecCCCccCCCcEEEEEEEecC-C
Q 047341 6 LEIILISAQGLKSPSSKMRRMQTYALVWIDS-STKLCTRVDRAGAESPIWNEKFLFKVTPEFLSSETSAISVEIYASG-Y 83 (254)
Q Consensus 6 L~V~VisA~~L~~~~d~~G~~DPYV~V~l~~-~~k~rTkv~k~gt~NP~WNE~f~F~v~~~~l~~~~~~L~veV~D~d-~ 83 (254)
|.|+|++|++|+. ..|.+||||++.++. ..+.+|++.++ +.||+|||.|.|.+.. ....|.|+|||++ .
T Consensus 1 l~v~v~~A~~L~~---~~g~~dpyv~v~~~~~~~~~kT~v~~~-t~nP~Wne~f~f~~~~-----~~~~l~~~v~d~~~~ 71 (126)
T cd08678 1 LLVKNIKANGLSE---AAGSSNPYCVLEMDEPPQKYQSSTQKN-TSNPFWDEHFLFELSP-----NSKELLFEVYDNGKK 71 (126)
T ss_pred CEEEEEEecCCCC---CCCCcCCEEEEEECCCCcEEEeEEEec-CCCCccCceEEEEeCC-----CCCEEEEEEEECCCC
Confidence 5799999999986 468999999999974 35679999875 8999999999999965 3678999999999 4
Q ss_pred CCCceeEEEEEeCccccccCCCCCCeeEEEEeeCC---CCCcceEEEEEEEEEeCCC
Q 047341 84 LRDYLIGTVRFLVSNISLSVATKTPSFTAFQIRRP---SGRFQGVLSIGSMLIDGSD 137 (254)
Q Consensus 84 ~~D~~LG~~~IpL~~l~~~~~~~~~~~~~~~L~~~---~g~~~G~I~lsl~f~p~~~ 137 (254)
.+|++||++.|++.++..... ...+|+|... +....|+|.+.+.|.+.+.
T Consensus 72 ~~~~~lG~~~i~l~~l~~~~~----~~~~~~L~~~~~~~~~~~G~l~l~~~~~~~~~ 124 (126)
T cd08678 72 SDSKFLGLAIVPFDELRKNPS----GRQIFPLQGRPYEGDSVSGSITVEFLFMEPAE 124 (126)
T ss_pred CCCceEEEEEEeHHHhccCCc----eeEEEEecCCCCCCCCcceEEEEEEEEecccc
Confidence 569999999999999876543 2467888643 3467999999999998753
No 10
>cd04022 C2A_MCTP_PRT_plant C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates
Probab=99.86 E-value=1.3e-20 Score=150.98 Aligned_cols=122 Identities=20% Similarity=0.311 Sum_probs=99.3
Q ss_pred EEEEEEEeeeCCCCCCCCCCCCCeEEEEEECCcCeEEeEeecCCCCCCeeceEEEEEecCCCccCCCcEEEEEEEecCC-
Q 047341 5 ILEIILISAQGLKSPSSKMRRMQTYALVWIDSSTKLCTRVDRAGAESPIWNEKFLFKVTPEFLSSETSAISVEIYASGY- 83 (254)
Q Consensus 5 ~L~V~VisA~~L~~~~d~~G~~DPYV~V~l~~~~k~rTkv~k~gt~NP~WNE~f~F~v~~~~l~~~~~~L~veV~D~d~- 83 (254)
.|+|+|++|++|++. +..|.+||||+|.+++. +.+|++.++ +.||+|||.|.|.+.... ......|.|+|||.+.
T Consensus 1 ~L~V~vi~A~~L~~~-d~~g~~dpyv~v~~~~~-~~rT~v~~~-t~nP~Wne~f~f~~~~~~-~~~~~~l~~~V~d~~~~ 76 (127)
T cd04022 1 KLVVEVVDAQDLMPK-DGQGSSSAYVELDFDGQ-KKRTRTKPK-DLNPVWNEKLVFNVSDPS-RLSNLVLEVYVYNDRRS 76 (127)
T ss_pred CeEEEEEEeeCCCCC-CCCCCcCcEEEEEECCE-EecceeEcC-CCCCccceEEEEEccCHH-HccCCeEEEEEeeCCCC
Confidence 489999999999988 78899999999999865 569999865 899999999999997421 0124689999999884
Q ss_pred C-CCceeEEEEEeCccccccCCCCCCeeEEEEeeCC--CCCcceEEEEEEEEE
Q 047341 84 L-RDYLIGTVRFLVSNISLSVATKTPSFTAFQIRRP--SGRFQGVLSIGSMLI 133 (254)
Q Consensus 84 ~-~D~~LG~~~IpL~~l~~~~~~~~~~~~~~~L~~~--~g~~~G~I~lsl~f~ 133 (254)
. +|++||++.|++.++...+ .....||+|..+ .++.+|+|.|++.|.
T Consensus 77 ~~~d~~lG~v~i~l~~l~~~~---~~~~~w~~L~~~~~~~~~~G~l~l~~~~~ 126 (127)
T cd04022 77 GRRRSFLGRVRISGTSFVPPS---EAVVQRYPLEKRGLFSRVRGEIGLKVYIT 126 (127)
T ss_pred cCCCCeeeEEEEcHHHcCCCC---CccceEeEeeeCCCCCCccEEEEEEEEEc
Confidence 3 7999999999999987432 234678898754 346899999999985
No 11
>cd08379 C2D_MCTP_PRT_plant C2 domain fourth repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate
Probab=99.85 E-value=1.3e-20 Score=152.17 Aligned_cols=112 Identities=22% Similarity=0.360 Sum_probs=93.2
Q ss_pred EEEEEEEeeeC---CCCCCCCCCCCCeEEEEEECCcCeEEeEeecCCCCCCeeceEEEEEecCCCccCCCcEEEEEEEec
Q 047341 5 ILEIILISAQG---LKSPSSKMRRMQTYALVWIDSSTKLCTRVDRAGAESPIWNEKFLFKVTPEFLSSETSAISVEIYAS 81 (254)
Q Consensus 5 ~L~V~VisA~~---L~~~~d~~G~~DPYV~V~l~~~~k~rTkv~k~gt~NP~WNE~f~F~v~~~~l~~~~~~L~veV~D~ 81 (254)
.|+|+|++|++ |+.. +..|.+||||+|.++++ +.||+++++ ++||+|||+|.|.+.. ....|.|+|||+
T Consensus 1 ~L~v~v~~A~~~~~l~~~-d~~g~sDPYv~i~~g~~-~~rTk~~~~-~~nP~WnE~f~f~v~~-----~~~~l~v~V~d~ 72 (126)
T cd08379 1 ILEVGILGAQGLDVLRAK-DGRGSTDAYCVAKYGPK-WVRTRTVED-SSNPRWNEQYTWPVYD-----PCTVLTVGVFDN 72 (126)
T ss_pred CeEEEEEEeECCcccccc-ccCCCCCeeEEEEECCE-EeEcCcccC-CCCCcceeEEEEEecC-----CCCEEEEEEEEC
Confidence 38999999999 7777 88899999999999755 779999975 8999999999999975 356899999999
Q ss_pred CCC-------CCceeEEEEEeCccccccCCCCCCeeEEEEeeCCC---CCcceEEEE
Q 047341 82 GYL-------RDYLIGTVRFLVSNISLSVATKTPSFTAFQIRRPS---GRFQGVLSI 128 (254)
Q Consensus 82 d~~-------~D~~LG~~~IpL~~l~~~~~~~~~~~~~~~L~~~~---g~~~G~I~l 128 (254)
+.. +|++||++.|+|..+..+.. ...+|+|...+ .+..|.|++
T Consensus 73 d~~~~~~~~~~dd~lG~~~i~l~~l~~~~~----~~~~~~L~~~~~~~~~~~g~l~~ 125 (126)
T cd08379 73 SQSHWKEAVQPDVLIGKVRIRLSTLEDDRV----YAHSYPLLSLNPSGVKKMGELEC 125 (126)
T ss_pred CCccccccCCCCceEEEEEEEHHHccCCCE----EeeEEEeEeCCCCCccCCcEEEe
Confidence 843 89999999999999876543 45789997532 456788765
No 12
>cd08401 C2A_RasA2_RasA3 C2 domain first repeat present in RasA2 and RasA3. RasA2 and RasA3 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA2 and RasA3 are both inositol 1,3,4,5-tetrakisphosphate-binding proteins and contain an N-terminal C2 domain, a Ras-GAP domain, a pleckstrin-homology (PH) domain which localizes it to the plasma membrane, and Bruton's Tyrosine Kinase (BTK) a zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular p
Probab=99.85 E-value=3.5e-20 Score=148.04 Aligned_cols=117 Identities=22% Similarity=0.305 Sum_probs=97.7
Q ss_pred EEEEEEeeeCCCCCCCCCCCCCeEEEEEECCcCeEEeEeecCCCCCCeeceEEEEEecCCCccCCCcEEEEEEEecC-CC
Q 047341 6 LEIILISAQGLKSPSSKMRRMQTYALVWIDSSTKLCTRVDRAGAESPIWNEKFLFKVTPEFLSSETSAISVEIYASG-YL 84 (254)
Q Consensus 6 L~V~VisA~~L~~~~d~~G~~DPYV~V~l~~~~k~rTkv~k~gt~NP~WNE~f~F~v~~~~l~~~~~~L~veV~D~d-~~ 84 (254)
|.|+|+.|++|+......|.+||||.|.++.....+|++.++ +.||+|||.|.|.+.. ....|.|.|||++ ..
T Consensus 2 l~v~v~~a~~L~~~~~~~g~sDpYv~v~l~~~~~~kT~v~~k-t~~P~WnE~F~f~v~~-----~~~~l~~~v~d~~~~~ 75 (121)
T cd08401 2 LKIKIGEAKNLPPRSGPNKMRDCYCTVNLDQEEVFRTKTVEK-SLCPFFGEDFYFEIPR-----TFRHLSFYIYDRDVLR 75 (121)
T ss_pred eEEEEEEccCCCCCCCCCCCcCcEEEEEECCccEEEeeEEEC-CCCCccCCeEEEEcCC-----CCCEEEEEEEECCCCC
Confidence 789999999999863345789999999997666789999876 9999999999999986 3579999999998 55
Q ss_pred CCceeEEEEEeCccccccCCCCCCeeEEEEeeC--CCCCcceEEEEEEEE
Q 047341 85 RDYLIGTVRFLVSNISLSVATKTPSFTAFQIRR--PSGRFQGVLSIGSML 132 (254)
Q Consensus 85 ~D~~LG~~~IpL~~l~~~~~~~~~~~~~~~L~~--~~g~~~G~I~lsl~f 132 (254)
+|++||.+.++|+++..... ...||+|.. +.++.+|+|+++++|
T Consensus 76 ~~~~iG~~~i~l~~l~~~~~----~~~w~~L~~~~~~~~~~G~i~l~~~~ 121 (121)
T cd08401 76 RDSVIGKVAIKKEDLHKYYG----KDTWFPLQPVDADSEVQGKVHLELRL 121 (121)
T ss_pred CCceEEEEEEEHHHccCCCC----cEeeEEEEccCCCCcccEEEEEEEEC
Confidence 79999999999999875432 357888874 345679999999875
No 13
>cd04015 C2_plant_PLD C2 domain present in plant phospholipase D (PLD). PLD hydrolyzes terminal phosphodiester bonds in diester glycerophospholipids resulting in the degradation of phospholipids. In vitro PLD transfers phosphatidic acid to primary alcohols. In plants PLD plays a role in germination, seedling growth, phosphatidylinositol metabolism, and changes in phospholipid composition. There is a single Ca(2+)/phospholipid-binding C2 domain in PLD. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins whic
Probab=99.85 E-value=3e-20 Score=155.22 Aligned_cols=120 Identities=18% Similarity=0.234 Sum_probs=100.3
Q ss_pred ccEEEEEEEeeeCCCCCCC------------------------------CCCCCCeEEEEEECCcCeEEeEeecCCCCCC
Q 047341 3 TQILEIILISAQGLKSPSS------------------------------KMRRMQTYALVWIDSSTKLCTRVDRAGAESP 52 (254)
Q Consensus 3 ~g~L~V~VisA~~L~~~~d------------------------------~~G~~DPYV~V~l~~~~k~rTkv~k~gt~NP 52 (254)
.|+|+|+|.+|++|+++ | ..|.+||||+|.+++....||+++++ +.||
T Consensus 6 hG~L~v~I~eA~~L~~~-d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~sDPYv~V~l~~~~~~rT~v~~~-~~nP 83 (158)
T cd04015 6 HGTLDVTIYEADNLPNM-DMFSEKLRRFFSKLVGCSEPTLKRPSSHRHVGKITSDPYATVDLAGARVARTRVIEN-SENP 83 (158)
T ss_pred eeeeEEEEEEeccCCCc-ccccchhhHHHHHHHhhcccccccccccccCCCCCcCeEEEEEECCeEeeEEEEeCC-CCCC
Confidence 47899999999999987 5 34678999999998765679999875 7999
Q ss_pred eeceEEEEEecCCCccCCCcEEEEEEEecCCCCCceeEEEEEeCccccccCCCCCCeeEEEEeeCCCC---CcceEEEEE
Q 047341 53 IWNEKFLFKVTPEFLSSETSAISVEIYASGYLRDYLIGTVRFLVSNISLSVATKTPSFTAFQIRRPSG---RFQGVLSIG 129 (254)
Q Consensus 53 ~WNE~f~F~v~~~~l~~~~~~L~veV~D~d~~~D~~LG~~~IpL~~l~~~~~~~~~~~~~~~L~~~~g---~~~G~I~ls 129 (254)
+|||.|.|.+.. ....|.|+|||.+..++++||.+.||+.++..+.. ...||+|..+.+ +..|.|+++
T Consensus 84 ~WnE~F~~~~~~-----~~~~l~~~V~d~d~~~~~~IG~~~i~l~~l~~g~~----~~~w~~L~~~~~~~~~~~~~l~v~ 154 (158)
T cd04015 84 VWNESFHIYCAH-----YASHVEFTVKDNDVVGAQLIGRAYIPVEDLLSGEP----VEGWLPILDSNGKPPKPGAKIRVS 154 (158)
T ss_pred ccceEEEEEccC-----CCCEEEEEEEeCCCcCCcEEEEEEEEhHHccCCCC----cceEEECcCCCCCCCCCCCEEEEE
Confidence 999999999875 35789999999997788999999999999876442 357899976533 346899999
Q ss_pred EEEE
Q 047341 130 SMLI 133 (254)
Q Consensus 130 l~f~ 133 (254)
++|.
T Consensus 155 ~~f~ 158 (158)
T cd04015 155 LQFT 158 (158)
T ss_pred EEEC
Confidence 9984
No 14
>cd04046 C2_Calpain C2 domain present in Calpain proteins. A single C2 domain is found in calpains (EC 3.4.22.52, EC 3.4.22.53), calcium-dependent, non-lysosomal cysteine proteases. Caplains are classified as belonging to Clan CA by MEROPS and include six families: C1, C2, C10, C12, C28, and C47. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of pic
Probab=99.85 E-value=5.1e-20 Score=147.67 Aligned_cols=120 Identities=17% Similarity=0.319 Sum_probs=100.6
Q ss_pred cccEEEEEEEeeeCCCCCCCCCCCCCeEEEEEECCcCeEEeEeecCCCCCCeeceEEEEEecCCCccCCCcEEEEEEEec
Q 047341 2 ATQILEIILISAQGLKSPSSKMRRMQTYALVWIDSSTKLCTRVDRAGAESPIWNEKFLFKVTPEFLSSETSAISVEIYAS 81 (254)
Q Consensus 2 ~~g~L~V~VisA~~L~~~~d~~G~~DPYV~V~l~~~~k~rTkv~k~gt~NP~WNE~f~F~v~~~~l~~~~~~L~veV~D~ 81 (254)
+..+|+|+|++|++|+.. +.+|.+||||+|.+++. +++|++.++ +.||+|||.|.|.+.. ....|.|+|||+
T Consensus 1 ~~~~~~V~v~~A~~L~~~-d~~g~~dPyv~v~~~~~-~~kT~v~~~-t~nP~Wne~f~f~~~~-----~~~~l~i~V~d~ 72 (126)
T cd04046 1 PQVVTQVHVHSAEGLSKQ-DSGGGADPYVIIKCEGE-SVRSPVQKD-TLSPEFDTQAIFYRKK-----PRSPIKIQVWNS 72 (126)
T ss_pred CcEEEEEEEEeCcCCCCC-CCCCCcCccEEEEECCE-EEEeCccCC-CCCCcccceEEEEecC-----CCCEEEEEEEEC
Confidence 357899999999999988 78899999999999765 679999875 8999999999999875 478999999999
Q ss_pred CCCCCceeEEEEEeCccccccCCCCCCeeEEEEee----CCCCCcceEEEEEEEEEeC
Q 047341 82 GYLRDYLIGTVRFLVSNISLSVATKTPSFTAFQIR----RPSGRFQGVLSIGSMLIDG 135 (254)
Q Consensus 82 d~~~D~~LG~~~IpL~~l~~~~~~~~~~~~~~~L~----~~~g~~~G~I~lsl~f~p~ 135 (254)
+..+|++||.+.+++.++... ...+|+|. ..+++..|+|.+++++.+.
T Consensus 73 ~~~~d~~lG~~~~~l~~~~~~------~~~~~~l~~~~~~~~~~~~G~i~~~~~~~~~ 124 (126)
T cd04046 73 NLLCDEFLGQATLSADPNDSQ------TLRTLPLRKRGRDAAGEVPGTISVKVTSSDD 124 (126)
T ss_pred CCCCCCceEEEEEecccCCCc------CceEEEcccCCCCCCCCCCCEEEEEEEEccc
Confidence 977899999999999875322 23556663 2467899999999998764
No 15
>cd08400 C2_Ras_p21A1 C2 domain present in RAS p21 protein activator 1 (RasA1). RasA1 is a GAP1 (GTPase activating protein 1), a Ras-specific GAP member, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA1 contains a C2 domain, a Ras-GAP domain, a pleckstrin homology (PH)-like domain, a SH3 domain, and 2 SH2 domains. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficki
Probab=99.85 E-value=5.4e-20 Score=147.71 Aligned_cols=119 Identities=18% Similarity=0.315 Sum_probs=96.8
Q ss_pred ccEEEEEEEeeeCCCCCCCCCCCCCeEEEEEECCcCeEEeEeecCCCCCCeeceEEEEEecCCCccCCCcEEEEEEEecC
Q 047341 3 TQILEIILISAQGLKSPSSKMRRMQTYALVWIDSSTKLCTRVDRAGAESPIWNEKFLFKVTPEFLSSETSAISVEIYASG 82 (254)
Q Consensus 3 ~g~L~V~VisA~~L~~~~d~~G~~DPYV~V~l~~~~k~rTkv~k~gt~NP~WNE~f~F~v~~~~l~~~~~~L~veV~D~d 82 (254)
.+.|+|+|++|+||+.. +.+||||+|.+++.+..+|++. . +.||.|||.|.|.+.+. ....|+|.|||.+
T Consensus 3 ~~~L~V~Vi~A~~L~~~----~~~DPYv~v~l~~~~~~kT~v~-~-~~nP~WnE~f~f~~~~~----~~~~l~v~v~d~~ 72 (126)
T cd08400 3 VRSLQLNVLEAHKLPVK----HVPHPYCVISLNEVKVARTKVR-E-GPNPVWSEEFVFDDLPP----DVNSFTISLSNKA 72 (126)
T ss_pred eeEEEEEEEEeeCCCCC----CCCCeeEEEEECCEeEEEeecC-C-CCCCccCCEEEEecCCC----CcCEEEEEEEECC
Confidence 35799999999999875 4689999999987666789874 3 79999999999997552 2357899999998
Q ss_pred -CCCCceeEEEEEeCccccccCCCCCCeeEEEEeeCCC---CCcceEEEEEEEEEeC
Q 047341 83 -YLRDYLIGTVRFLVSNISLSVATKTPSFTAFQIRRPS---GRFQGVLSIGSMLIDG 135 (254)
Q Consensus 83 -~~~D~~LG~~~IpL~~l~~~~~~~~~~~~~~~L~~~~---g~~~G~I~lsl~f~p~ 135 (254)
..+|++||.+.|||.++..+.. ...||.|...+ .+..|+|+|+++|.+.
T Consensus 73 ~~~~d~~iG~v~i~l~~l~~~~~----~~~W~~L~~~~~~~~~~~G~i~l~l~~~~~ 125 (126)
T cd08400 73 KRSKDSEIAEVTVQLSKLQNGQE----TDEWYPLSSASPLKGGEWGSLRIRARYSHE 125 (126)
T ss_pred CCCCCCeEEEEEEEHhHccCCCc----ccEeEEcccCCCCCCCcCcEEEEEEEEEcc
Confidence 5679999999999999876543 35788987542 4567999999999864
No 16
>cd08377 C2C_MCTP_PRT C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. The cds in this family contain multiple C2 domains as well as a C-terminal PRT domain. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal tran
Probab=99.84 E-value=9e-20 Score=143.56 Aligned_cols=116 Identities=17% Similarity=0.302 Sum_probs=98.7
Q ss_pred cEEEEEEEeeeCCCCCCCCCCCCCeEEEEEECCcCeEEeEeecCCCCCCeeceEEEEEecCCCccCCCcEEEEEEEecCC
Q 047341 4 QILEIILISAQGLKSPSSKMRRMQTYALVWIDSSTKLCTRVDRAGAESPIWNEKFLFKVTPEFLSSETSAISVEIYASGY 83 (254)
Q Consensus 4 g~L~V~VisA~~L~~~~d~~G~~DPYV~V~l~~~~k~rTkv~k~gt~NP~WNE~f~F~v~~~~l~~~~~~L~veV~D~d~ 83 (254)
|.|+|+|++|++|+.. +..+.+||||+|.+++. +.+|+++++ +.||.|||+|.|.+.. ....|.|+|||++.
T Consensus 1 g~l~v~v~~a~~L~~~-~~~~~~dPyv~v~~~~~-~~~T~~~~~-t~nP~W~e~f~~~~~~-----~~~~l~~~v~d~~~ 72 (119)
T cd08377 1 GFLQVKVIRASGLAAA-DIGGKSDPFCVLELVNA-RLQTHTIYK-TLNPEWNKIFTFPIKD-----IHDVLEVTVYDEDK 72 (119)
T ss_pred CEEEEEEEeeeCCCCC-CCCCCCCcEEEEEECCE-eeecceecC-CcCCccCcEEEEEecC-----cCCEEEEEEEECCC
Confidence 6899999999999998 78889999999999755 569999875 8999999999999865 36899999999984
Q ss_pred -CCCceeEEEEEeCccccccCCCCCCeeEEEEeeCC--CCCcceEEEEEEEEE
Q 047341 84 -LRDYLIGTVRFLVSNISLSVATKTPSFTAFQIRRP--SGRFQGVLSIGSMLI 133 (254)
Q Consensus 84 -~~D~~LG~~~IpL~~l~~~~~~~~~~~~~~~L~~~--~g~~~G~I~lsl~f~ 133 (254)
.++++||++.+++.++..+. ..||+|..+ .++.+|+|.+++.|.
T Consensus 73 ~~~~~~iG~~~~~l~~~~~~~------~~~~~l~~~~~~~~~~G~i~l~~~~~ 119 (119)
T cd08377 73 DKKPEFLGKVAIPLLSIKNGE------RKWYALKDKKLRTRAKGSILLEMDVI 119 (119)
T ss_pred CCCCceeeEEEEEHHHCCCCC------ceEEECcccCCCCceeeEEEEEEEeC
Confidence 67899999999999986443 368888754 346899999999873
No 17
>cd08375 C2_Intersectin C2 domain present in Intersectin. A single instance of the C2 domain is located C terminally in the intersectin protein. Intersectin functions as a scaffolding protein, providing a link between the actin cytoskeleton and the components of endocytosis and plays a role in signal transduction. In addition to C2, intersectin contains several additional domains including: Eps15 homology domains, SH3 domains, a RhoGEF domain, and a PH domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking pro
Probab=99.84 E-value=8.9e-20 Score=148.73 Aligned_cols=121 Identities=18% Similarity=0.288 Sum_probs=98.0
Q ss_pred cccEEEEEEEeeeCCCCCCCCCCCCCeEEEEEECCcCeEEeEeecCCCCCCeeceEEEEEecCCCccCCCcEEEEEEEec
Q 047341 2 ATQILEIILISAQGLKSPSSKMRRMQTYALVWIDSSTKLCTRVDRAGAESPIWNEKFLFKVTPEFLSSETSAISVEIYAS 81 (254)
Q Consensus 2 ~~g~L~V~VisA~~L~~~~d~~G~~DPYV~V~l~~~~k~rTkv~k~gt~NP~WNE~f~F~v~~~~l~~~~~~L~veV~D~ 81 (254)
..|.|+|+|++|++|++. +..|.+||||++.++. .+++|+++++ +.||.|||+|.|.+... ....|.|+|||+
T Consensus 13 ~~G~L~V~Vi~A~~L~~~-d~~g~~DPYv~v~~~~-~~~kT~vi~~-t~nP~Wne~f~f~v~~~----~~~~l~i~V~D~ 85 (136)
T cd08375 13 GIGRLMVVIVEGRDLKPC-NSNGKSDPYCEVSMGS-QEHKTKVVSD-TLNPKWNSSMQFFVKDL----EQDVLCITVFDR 85 (136)
T ss_pred CcEEEEEEEEEeeCCCCC-CCCCCcCcEEEEEECC-EeeeccccCC-CCCCccCceEEEEecCc----cCCEEEEEEEEC
Confidence 358999999999999998 7889999999999964 4679999875 89999999999999752 367899999999
Q ss_pred C-CCCCceeEEEEEeCccccccCC-CCCCeeEEEEeeCCCCCcceEEEEEEEE
Q 047341 82 G-YLRDYLIGTVRFLVSNISLSVA-TKTPSFTAFQIRRPSGRFQGVLSIGSML 132 (254)
Q Consensus 82 d-~~~D~~LG~~~IpL~~l~~~~~-~~~~~~~~~~L~~~~g~~~G~I~lsl~f 132 (254)
+ ...|++||.+.|+|.++..... .......+.++ ++..+|+|+++++|
T Consensus 86 d~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~~~~~---~~~~~g~i~l~~~~ 135 (136)
T cd08375 86 DFFSPDDFLGRTEIRVADILKETKESKGPITKRLLL---HEVPTGEVVVKLDL 135 (136)
T ss_pred CCCCCCCeeEEEEEEHHHhccccccCCCcEEEEecc---ccccceeEEEEEEe
Confidence 9 5568999999999999886332 11112233333 46778999999987
No 18
>cd04036 C2_cPLA2 C2 domain present in cytosolic PhosphoLipase A2 (cPLA2). A single copy of the C2 domain is present in cPLA2 which releases arachidonic acid from membranes initiating the biosynthesis of potent inflammatory mediators such as prostaglandins, leukotrienes, and platelet-activating factor. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants o
Probab=99.83 E-value=1e-19 Score=143.98 Aligned_cols=115 Identities=21% Similarity=0.411 Sum_probs=95.6
Q ss_pred EEEEEEeeeCCCCCCCCCCCCCeEEEEEECC--cCeEEeEeecCCCCCCeeceEEEEEecCCCccCCCcEEEEEEEecCC
Q 047341 6 LEIILISAQGLKSPSSKMRRMQTYALVWIDS--STKLCTRVDRAGAESPIWNEKFLFKVTPEFLSSETSAISVEIYASGY 83 (254)
Q Consensus 6 L~V~VisA~~L~~~~d~~G~~DPYV~V~l~~--~~k~rTkv~k~gt~NP~WNE~f~F~v~~~~l~~~~~~L~veV~D~d~ 83 (254)
|+|+|++|++|++. +..+.+||||+|.+.+ ..+.+|+++++ +.||+|||+|.|.+... ....|.|+|||++.
T Consensus 2 L~V~vi~a~~L~~~-~~~~~~Dpyv~v~~~~~~~~~~kT~vv~~-t~nP~Wne~f~f~i~~~----~~~~l~v~v~d~d~ 75 (119)
T cd04036 2 LTVRVLRATNITKG-DLLSTPDCYVELWLPTASDEKKRTKTIKN-SINPVWNETFEFRIQSQ----VKNVLELTVMDEDY 75 (119)
T ss_pred eEEEEEEeeCCCcc-CCCCCCCcEEEEEEcCCCCccCccceecC-CCCCccceEEEEEeCcc----cCCEEEEEEEECCC
Confidence 78999999999988 7789999999999964 35679999875 89999999999999763 35689999999995
Q ss_pred CCCceeEEEEEeCccccccCCCCCCeeEEEEeeCCCCCcceEEEEEEEEE
Q 047341 84 LRDYLIGTVRFLVSNISLSVATKTPSFTAFQIRRPSGRFQGVLSIGSMLI 133 (254)
Q Consensus 84 ~~D~~LG~~~IpL~~l~~~~~~~~~~~~~~~L~~~~g~~~G~I~lsl~f~ 133 (254)
.+|++||++.+++.++..+. ....+|+|.. +.+|+|++.+.+.
T Consensus 76 ~~~~~iG~~~~~l~~l~~g~----~~~~~~~L~~---~~~g~l~~~~~~~ 118 (119)
T cd04036 76 VMDDHLGTVLFDVSKLKLGE----KVRVTFSLNP---QGKEELEVEFLLE 118 (119)
T ss_pred CCCcccEEEEEEHHHCCCCC----cEEEEEECCC---CCCceEEEEEEee
Confidence 58999999999999987654 2467888853 3578888888763
No 19
>cd08378 C2B_MCTP_PRT_plant C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate
Probab=99.83 E-value=1.1e-19 Score=145.08 Aligned_cols=117 Identities=21% Similarity=0.317 Sum_probs=97.3
Q ss_pred EEEEEEeeeCCCCCCCCCCCCCeEEEEEECCcCeEEeEeecCCCCCCeeceEEEEEecCCCccCCCcEEEEEEEecCCCC
Q 047341 6 LEIILISAQGLKSPSSKMRRMQTYALVWIDSSTKLCTRVDRAGAESPIWNEKFLFKVTPEFLSSETSAISVEIYASGYLR 85 (254)
Q Consensus 6 L~V~VisA~~L~~~~d~~G~~DPYV~V~l~~~~k~rTkv~k~gt~NP~WNE~f~F~v~~~~l~~~~~~L~veV~D~d~~~ 85 (254)
|+|+|++|++|+.. .+||||+|.+++ .+.+|+++++ +.||+|||+|.|.+... ....|.|+|||++..+
T Consensus 2 L~V~Vi~a~~L~~~-----~~Dpyv~v~l~~-~~~kT~v~~~-t~nP~Wne~F~f~~~~~----~~~~L~~~v~d~d~~~ 70 (121)
T cd08378 2 LYVRVVKARGLPAN-----SNDPVVEVKLGN-YKGSTKAIER-TSNPEWNQVFAFSKDRL----QGSTLEVSVWDKDKAK 70 (121)
T ss_pred EEEEEEEecCCCcc-----cCCCEEEEEECC-ccccccccCC-CCCCccceEEEEEcCCC----cCCEEEEEEEeCCCCc
Confidence 89999999999875 589999999976 4679999875 89999999999998641 4688999999999668
Q ss_pred CceeEEEEEeCccccccCC-CCCCeeEEEEeeCCC-CCcceEEEEEEEEE
Q 047341 86 DYLIGTVRFLVSNISLSVA-TKTPSFTAFQIRRPS-GRFQGVLSIGSMLI 133 (254)
Q Consensus 86 D~~LG~~~IpL~~l~~~~~-~~~~~~~~~~L~~~~-g~~~G~I~lsl~f~ 133 (254)
+++||.+.|+|.++..... ++.....||+|.... .+.+|+|+|+++|.
T Consensus 71 ~~~lG~~~i~l~~l~~~~~~~~~~~~~W~~L~~~~~~~~~G~i~l~~~~~ 120 (121)
T cd08378 71 DDFLGGVCFDLSEVPTRVPPDSPLAPQWYRLEDKKGGRVGGELMLAVWFG 120 (121)
T ss_pred CceeeeEEEEhHhCcCCCCCCCCCCcceEEccCCCCCccceEEEEEEEec
Confidence 9999999999999876432 223346899997643 47899999999985
No 20
>cd08382 C2_Smurf-like C2 domain present in Smad ubiquitination-related factor (Smurf)-like proteins. A single C2 domain is found in Smurf proteins, C2-WW-HECT-domain E3s, which play an important role in the downregulation of the TGF-beta signaling pathway. Smurf proteins also regulate cell shape, motility, and polarity by degrading small guanosine triphosphatases (GTPases). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are
Probab=99.83 E-value=1.8e-19 Score=143.83 Aligned_cols=114 Identities=20% Similarity=0.423 Sum_probs=94.7
Q ss_pred EEEEEEeeeCCCCCCCCCCCCCeEEEEEECCcCeEEeEeecCCCCCCeeceEEEEEecCCCccCCCcEEEEEEEecCCC-
Q 047341 6 LEIILISAQGLKSPSSKMRRMQTYALVWIDSSTKLCTRVDRAGAESPIWNEKFLFKVTPEFLSSETSAISVEIYASGYL- 84 (254)
Q Consensus 6 L~V~VisA~~L~~~~d~~G~~DPYV~V~l~~~~k~rTkv~k~gt~NP~WNE~f~F~v~~~~l~~~~~~L~veV~D~d~~- 84 (254)
|+|+|++|++|+.. +..+.+||||+|.+++...++|+++++ +.||.|||.|.|.+.. ...|.|+|||++..
T Consensus 2 l~v~v~~A~~L~~~-~~~~~~dpyv~v~~~~~~~~kT~v~~~-t~nP~Wne~f~~~~~~------~~~l~i~V~d~~~~~ 73 (123)
T cd08382 2 VRLTVLCADGLAKR-DLFRLPDPFAVITVDGGQTHSTDVAKK-TLDPKWNEHFDLTVGP------SSIITIQVFDQKKFK 73 (123)
T ss_pred eEEEEEEecCCCcc-CCCCCCCcEEEEEECCccceEccEEcC-CCCCcccceEEEEeCC------CCEEEEEEEECCCCC
Confidence 89999999999998 788999999999998666789999875 8999999999999964 67999999999843
Q ss_pred C--CceeEEEEEeCccccccCCCCCCeeEEEEeeCC----CCCcceEEEEEE
Q 047341 85 R--DYLIGTVRFLVSNISLSVATKTPSFTAFQIRRP----SGRFQGVLSIGS 130 (254)
Q Consensus 85 ~--D~~LG~~~IpL~~l~~~~~~~~~~~~~~~L~~~----~g~~~G~I~lsl 130 (254)
. |++||++.|++.++...... ...||+|+.. .+...|+|.+++
T Consensus 74 ~~~d~~lG~~~i~l~~l~~~~~~---~~~~~~l~~~~~~~~~~~~G~v~~~~ 122 (123)
T cd08382 74 KKDQGFLGCVRIRANAVLPLKDT---GYQRLDLRKLKKSDNLSVRGKIVVSL 122 (123)
T ss_pred CCCCceEeEEEEEHHHccccCCC---ccceeEeecCCCCCCceEeeEEEEEe
Confidence 2 58999999999998765431 1347777543 356789998876
No 21
>KOG1030 consensus Predicted Ca2+-dependent phospholipid-binding protein [General function prediction only]
Probab=99.83 E-value=4.2e-20 Score=154.21 Aligned_cols=95 Identities=20% Similarity=0.352 Sum_probs=86.0
Q ss_pred CcccEEEEEEEeeeCCCCCCCCCCCCCeEEEEEECCcCeEEeEeecCCCCCCeeceEEEEEecCCCccCCCcEEEEEEEe
Q 047341 1 MATQILEIILISAQGLKSPSSKMRRMQTYALVWIDSSTKLCTRVDRAGAESPIWNEKFLFKVTPEFLSSETSAISVEIYA 80 (254)
Q Consensus 1 M~~g~L~V~VisA~~L~~~~d~~G~~DPYV~V~l~~~~k~rTkv~k~gt~NP~WNE~f~F~v~~~~l~~~~~~L~veV~D 80 (254)
|.-|.|+|+|++|.+|... |..+++||||++.++++ +.+|++.++ ++||+|||.|+|.|.+ ++..|.++|||
T Consensus 3 ~~vGLL~v~v~~g~~L~~r-D~~~sSDPyVVl~lg~q-~lkT~~v~~-n~NPeWNe~ltf~v~d-----~~~~lkv~VyD 74 (168)
T KOG1030|consen 3 MLVGLLRVRVKRGKNLAIR-DFLGSSDPYVVLELGNQ-KLKTRVVYK-NLNPEWNEELTFTVKD-----PNTPLKVTVYD 74 (168)
T ss_pred ccceEEEEEEEeecCeeee-ccccCCCCeEEEEECCe-eeeeeeecC-CCCCcccceEEEEecC-----CCceEEEEEEe
Confidence 5678999999999999998 88899999999999755 779998865 9999999999999997 68999999999
Q ss_pred cC-CCCCceeEEEEEeCccccccC
Q 047341 81 SG-YLRDYLIGTVRFLVSNISLSV 103 (254)
Q Consensus 81 ~d-~~~D~~LG~~~IpL~~l~~~~ 103 (254)
+| +..|+++|.|.|+|..+....
T Consensus 75 ~D~fs~dD~mG~A~I~l~p~~~~~ 98 (168)
T KOG1030|consen 75 KDTFSSDDFMGEATIPLKPLLEAQ 98 (168)
T ss_pred CCCCCcccccceeeeccHHHHHHh
Confidence 99 678999999999999987654
No 22
>cd08376 C2B_MCTP_PRT C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protei
Probab=99.82 E-value=3e-19 Score=140.28 Aligned_cols=114 Identities=16% Similarity=0.291 Sum_probs=96.3
Q ss_pred EEEEEEEeeeCCCCCCCCCCCCCeEEEEEECCcCeEEeEeecCCCCCCeeceEEEEEecCCCccCCCcEEEEEEEecC-C
Q 047341 5 ILEIILISAQGLKSPSSKMRRMQTYALVWIDSSTKLCTRVDRAGAESPIWNEKFLFKVTPEFLSSETSAISVEIYASG-Y 83 (254)
Q Consensus 5 ~L~V~VisA~~L~~~~d~~G~~DPYV~V~l~~~~k~rTkv~k~gt~NP~WNE~f~F~v~~~~l~~~~~~L~veV~D~d-~ 83 (254)
+|+|+|++|++|+.. +..+.+||||++.+++. +.+|++.++ +.||.|||.|.|.+.+. ....|.|+|||++ .
T Consensus 1 ~~~V~v~~a~~L~~~-~~~~~~dPyv~v~~~~~-~~kT~v~~~-t~nP~Wne~f~f~~~~~----~~~~l~v~v~d~~~~ 73 (116)
T cd08376 1 VVTIVLVEGKNLPPM-DDNGLSDPYVKFRLGNE-KYKSKVCSK-TLNPQWLEQFDLHLFDD----QSQILEIEVWDKDTG 73 (116)
T ss_pred CEEEEEEEEECCCCC-CCCCCCCcEEEEEECCE-eEecccccC-CCCCceeEEEEEEecCC----CCCEEEEEEEECCCC
Confidence 479999999999998 77899999999999754 679999875 99999999999999762 3789999999999 4
Q ss_pred CCCceeEEEEEeCccccccCCCCCCeeEEEEeeCCCCCcceEEEEEEEEE
Q 047341 84 LRDYLIGTVRFLVSNISLSVATKTPSFTAFQIRRPSGRFQGVLSIGSMLI 133 (254)
Q Consensus 84 ~~D~~LG~~~IpL~~l~~~~~~~~~~~~~~~L~~~~g~~~G~I~lsl~f~ 133 (254)
.+|++||.+.++|.++..+. ....||+|... .|+|++.+.|.
T Consensus 74 ~~~~~iG~~~~~l~~l~~~~----~~~~w~~L~~~----~G~~~~~~~~~ 115 (116)
T cd08376 74 KKDEFIGRCEIDLSALPREQ----THSLELELEDG----EGSLLLLLTLT 115 (116)
T ss_pred CCCCeEEEEEEeHHHCCCCC----ceEEEEEccCC----CcEEEEEEEec
Confidence 57999999999999987543 24678888642 59999998875
No 23
>cd04054 C2A_Rasal1_RasA4 C2 domain first repeat present in RasA1 and RasA4. Rasal1 and RasA4 are both members of GAP1 (GTPase activating protein 1). Rasal1 responds to repetitive Ca2+ signals by associating with the plasma membrane and deactivating Ras. RasA4 suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both of these proteins contains two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins.
Probab=99.82 E-value=4.3e-19 Score=141.31 Aligned_cols=116 Identities=19% Similarity=0.286 Sum_probs=96.7
Q ss_pred EEEEEEeeeCCCCCCCCCCCCCeEEEEEECCcCeEEeEeecCCCCCCeeceEEEEEecCCCccCCCcEEEEEEEecC-CC
Q 047341 6 LEIILISAQGLKSPSSKMRRMQTYALVWIDSSTKLCTRVDRAGAESPIWNEKFLFKVTPEFLSSETSAISVEIYASG-YL 84 (254)
Q Consensus 6 L~V~VisA~~L~~~~d~~G~~DPYV~V~l~~~~k~rTkv~k~gt~NP~WNE~f~F~v~~~~l~~~~~~L~veV~D~d-~~ 84 (254)
|.|+|++|++|++. +..|.+||||+|.+++....+|+++++ ++||+|||.|.|.+.. ....|.|+|||++ ..
T Consensus 2 l~v~vi~a~~L~~~-d~~g~~DPYv~v~~~~~~~~kT~v~~~-t~nP~Wne~f~~~~~~-----~~~~l~v~v~d~~~~~ 74 (121)
T cd04054 2 LYIRIVEGKNLPAK-DITGSSDPYCIVKVDNEVIIRTATVWK-TLNPFWGEEYTVHLPP-----GFHTVSFYVLDEDTLS 74 (121)
T ss_pred EEEEEEEeeCCcCC-CCCCCCCceEEEEECCEeeeeeeeEcC-CCCCcccceEEEeeCC-----CCCEEEEEEEECCCCC
Confidence 88999999999998 788999999999998765579999876 8999999999999975 3579999999999 45
Q ss_pred CCceeEEEEEeCccccccCCCCCCeeEEEEeeC--CCCCcceEEEEEEE
Q 047341 85 RDYLIGTVRFLVSNISLSVATKTPSFTAFQIRR--PSGRFQGVLSIGSM 131 (254)
Q Consensus 85 ~D~~LG~~~IpL~~l~~~~~~~~~~~~~~~L~~--~~g~~~G~I~lsl~ 131 (254)
.|++||++.+++.++..... ....|++|.. +.+...|+|++.++
T Consensus 75 ~d~~iG~~~~~~~~~~~~~~---~~~~W~~L~~~~~~~~~~G~i~l~~~ 120 (121)
T cd04054 75 RDDVIGKVSLTREVISAHPR---GIDGWMNLTEVDPDEEVQGEIHLELS 120 (121)
T ss_pred CCCEEEEEEEcHHHhccCCC---CCCcEEECeeeCCCCccccEEEEEEE
Confidence 79999999999988764321 1246788853 45567999999876
No 24
>cd04024 C2A_Synaptotagmin-like C2 domain first repeat present in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permu
Probab=99.82 E-value=3.7e-19 Score=141.58 Aligned_cols=121 Identities=12% Similarity=0.217 Sum_probs=98.5
Q ss_pred cEEEEEEEeeeCCCCCCCC--CCCCCeEEEEEECCcCeEEeEeecCCCCCCeeceEEEEEecCCCccCCCcEEEEEEEec
Q 047341 4 QILEIILISAQGLKSPSSK--MRRMQTYALVWIDSSTKLCTRVDRAGAESPIWNEKFLFKVTPEFLSSETSAISVEIYAS 81 (254)
Q Consensus 4 g~L~V~VisA~~L~~~~d~--~G~~DPYV~V~l~~~~k~rTkv~k~gt~NP~WNE~f~F~v~~~~l~~~~~~L~veV~D~ 81 (254)
|+|+|+|++|++|+.. +. .+.+||||+|.+++ .+.+|+++++ +.||.|||.|.|.+... ....|.|+|||+
T Consensus 1 g~l~v~v~~a~~L~~~-~~~~~~~~dPyv~v~~~~-~~~kT~~~~~-t~~P~Wne~f~~~~~~~----~~~~l~i~v~d~ 73 (128)
T cd04024 1 GVLRVHVVEAKDLAAK-DRSGKGKSDPYAILSVGA-QRFKTQTIPN-TLNPKWNYWCEFPIFSA----QNQLLKLILWDK 73 (128)
T ss_pred CEEEEEEEEeeCCCcc-cCCCCCCcCCeEEEEECC-EEEecceecC-CcCCccCCcEEEEecCC----CCCEEEEEEEEC
Confidence 6899999999999988 67 78999999999965 4679999875 89999999999999752 478999999999
Q ss_pred CC-CCCceeEEEEEeCccccccCCCCCCeeEEEEeeCC----CCCcceEEEEEEEE
Q 047341 82 GY-LRDYLIGTVRFLVSNISLSVATKTPSFTAFQIRRP----SGRFQGVLSIGSML 132 (254)
Q Consensus 82 d~-~~D~~LG~~~IpL~~l~~~~~~~~~~~~~~~L~~~----~g~~~G~I~lsl~f 132 (254)
+. ..+++||.+.|+|.++...... .....||.|... .....|+|+|.+++
T Consensus 74 ~~~~~~~~lG~~~i~l~~~~~~~~~-~~~~~w~~L~~~~~~~~~~~~G~i~l~~~~ 128 (128)
T cd04024 74 DRFAGKDYLGEFDIALEEVFADGKT-GQSDKWITLKSTRPGKTSVVSGEIHLQFSW 128 (128)
T ss_pred CCCCCCCcceEEEEEHHHhhccccc-CccceeEEccCcccCccccccceEEEEEEC
Confidence 84 4789999999999998742211 123578888643 23479999999864
No 25
>cd08395 C2C_Munc13 C2 domain third repeat in Munc13 (mammalian uncoordinated) proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi
Probab=99.82 E-value=2.7e-19 Score=143.33 Aligned_cols=105 Identities=18% Similarity=0.263 Sum_probs=84.6
Q ss_pred EEEEEEEeeeCCCCCCCCCCCCCeEEEEEECC----c--CeEEeEeecCCCCCCeeceEEEEEecCCCccCCCcEEEEEE
Q 047341 5 ILEIILISAQGLKSPSSKMRRMQTYALVWIDS----S--TKLCTRVDRAGAESPIWNEKFLFKVTPEFLSSETSAISVEI 78 (254)
Q Consensus 5 ~L~V~VisA~~L~~~~d~~G~~DPYV~V~l~~----~--~k~rTkv~k~gt~NP~WNE~f~F~v~~~~l~~~~~~L~veV 78 (254)
.|+|+|++|++|+.. + .|.+||||+|.+.+ . ++.+|++.+ +++||+|||+|.|.+..+. ..+...|.|.|
T Consensus 1 kL~V~Vi~A~~L~~~-d-~g~~DPYVkV~l~g~~~~~k~~k~kTkv~~-~tlnPvwNE~f~F~v~~~~-~~~~~~L~~~V 76 (120)
T cd08395 1 KVTVKVVAANDLKWQ-T-TGMFRPFVEVNLIGPHLSDKKRKFATKSKN-NNWSPKYNETFQFILGNED-DPESYELHICV 76 (120)
T ss_pred CEEEEEEECcCCCcc-c-CCCCCCEEEEEEecCCCcccccEeeeEEec-CCCCCccCcEEEEEeeCcC-CCceeEEEEEE
Confidence 489999999999987 6 49999999999842 2 356898885 5999999999999997531 12457899999
Q ss_pred EecCCC-CCceeEEEEEeCccccccCCCCCCeeEEEEeeC
Q 047341 79 YASGYL-RDYLIGTVRFLVSNISLSVATKTPSFTAFQIRR 117 (254)
Q Consensus 79 ~D~d~~-~D~~LG~~~IpL~~l~~~~~~~~~~~~~~~L~~ 117 (254)
||++.. .|++||++.|||.++..++. ...|++|..
T Consensus 77 ~D~d~~~~dd~IG~~~l~l~~~~~~~~----~~~w~~L~~ 112 (120)
T cd08395 77 KDYCFARDDRLVGVTVLQLRDIAQAGS----CACWLPLGR 112 (120)
T ss_pred EEecccCCCCEEEEEEEEHHHCcCCCc----EEEEEECcC
Confidence 999854 58999999999999986653 457888854
No 26
>cd04014 C2_PKC_epsilon C2 domain in Protein Kinase C (PKC) epsilon. A single C2 domain is found in PKC epsilon. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1 (alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that
Probab=99.81 E-value=7.5e-19 Score=141.58 Aligned_cols=119 Identities=18% Similarity=0.225 Sum_probs=98.6
Q ss_pred CcccEEEEEEEeeeCCCCCCCC----------CCCCCeEEEEEECCcCeEEeEeecCCCCCCeeceEEEEEecCCCccCC
Q 047341 1 MATQILEIILISAQGLKSPSSK----------MRRMQTYALVWIDSSTKLCTRVDRAGAESPIWNEKFLFKVTPEFLSSE 70 (254)
Q Consensus 1 M~~g~L~V~VisA~~L~~~~d~----------~G~~DPYV~V~l~~~~k~rTkv~k~gt~NP~WNE~f~F~v~~~~l~~~ 70 (254)
|-.|.|+|+|++|++|++. +. .|.+||||+|.++++...+|++.++ +.||.|||+|.|.+..
T Consensus 1 ~~~g~l~V~v~~a~~L~~~-d~~~~~~~~~~~~g~~dpyv~v~~~~~~~~kT~~~~~-t~~P~Wne~f~~~v~~------ 72 (132)
T cd04014 1 MFTGTLKIKICEAVDLKPT-DWSTRHAVPKKGSQLLDPYVSIDVDDTHIGKTSTKPK-TNSPVWNEEFTTEVHN------ 72 (132)
T ss_pred CcceEEEEEEEEecCCCCC-CchhhhcccccCccCcCcEEEEEECCEEEeEEeEcCC-CCCCCcceeEEEEcCC------
Confidence 5678999999999999987 54 2579999999998766579998765 9999999999999974
Q ss_pred CcEEEEEEEecC-CCCCceeEEEEEeCccccccCCCCCCeeEEEEeeCCCCCcceEEEEEEEEEe
Q 047341 71 TSAISVEIYASG-YLRDYLIGTVRFLVSNISLSVATKTPSFTAFQIRRPSGRFQGVLSIGSMLID 134 (254)
Q Consensus 71 ~~~L~veV~D~d-~~~D~~LG~~~IpL~~l~~~~~~~~~~~~~~~L~~~~g~~~G~I~lsl~f~p 134 (254)
...|.|+|||.+ ...|++||.+.|+|.++..... .....|++|. ++|.|++.+.|..
T Consensus 73 ~~~l~~~v~d~~~~~~~~~iG~~~i~l~~l~~~~~--~~~~~w~~L~-----~~G~l~l~~~~~~ 130 (132)
T cd04014 73 GRNLELTVFHDAAIGPDDFVANCTISFEDLIQRGS--GSFDLWVDLE-----PQGKLHVKIELKG 130 (132)
T ss_pred CCEEEEEEEeCCCCCCCceEEEEEEEhHHhcccCC--CcccEEEEcc-----CCcEEEEEEEEec
Confidence 689999999988 4578999999999999887411 1235788884 5799999999875
No 27
>cd08391 C2A_C2C_Synaptotagmin_like C2 domain first and third repeat in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular
Probab=99.81 E-value=3.8e-19 Score=140.01 Aligned_cols=115 Identities=17% Similarity=0.257 Sum_probs=96.1
Q ss_pred cEEEEEEEeeeCCCCCCCC------CCCCCeEEEEEECCcCeEEeEeecCCCCCCeeceEEEEEecCCCccCCCcEEEEE
Q 047341 4 QILEIILISAQGLKSPSSK------MRRMQTYALVWIDSSTKLCTRVDRAGAESPIWNEKFLFKVTPEFLSSETSAISVE 77 (254)
Q Consensus 4 g~L~V~VisA~~L~~~~d~------~G~~DPYV~V~l~~~~k~rTkv~k~gt~NP~WNE~f~F~v~~~~l~~~~~~L~ve 77 (254)
|+|+|+|++|++|++. +. .|.+||||+|.+++ ..++|++.++ +.||+|||.|.|.+... ....|.|+
T Consensus 1 g~l~v~v~~a~~L~~~-d~~~~~~~~g~~dPyv~v~~~~-~~~kT~~~~~-t~~P~W~e~f~~~v~~~----~~~~l~i~ 73 (121)
T cd08391 1 GVLRIHVIEAQDLVAK-DKFVGGLVKGKSDPYVIVRVGA-QTFKSKVIKE-NLNPKWNEVYEAVVDEV----PGQELEIE 73 (121)
T ss_pred CeEEEEEEEccCCccc-ccccccCCCCCcCCEEEEEECC-EeEEccccCC-CCCCcccceEEEEeCCC----CCCEEEEE
Confidence 6799999999999987 43 36899999999986 5679999875 99999999999999752 47899999
Q ss_pred EEecCCCCCceeEEEEEeCccccccCCCCCCeeEEEEeeCCCCCcceEEEEEEEE
Q 047341 78 IYASGYLRDYLIGTVRFLVSNISLSVATKTPSFTAFQIRRPSGRFQGVLSIGSML 132 (254)
Q Consensus 78 V~D~d~~~D~~LG~~~IpL~~l~~~~~~~~~~~~~~~L~~~~g~~~G~I~lsl~f 132 (254)
|||++..+|++||.+.|++.++..... ...||+|.. ..+|+|++.+.|
T Consensus 74 v~d~~~~~~~~iG~~~i~l~~l~~~~~----~~~w~~L~~---~~~G~~~~~~~~ 121 (121)
T cd08391 74 LFDEDPDKDDFLGRLSIDLGSVEKKGF----IDEWLPLED---VKSGRLHLKLEW 121 (121)
T ss_pred EEecCCCCCCcEEEEEEEHHHhcccCc----cceEEECcC---CCCceEEEEEeC
Confidence 999995589999999999999876432 357888854 268999998764
No 28
>cd08381 C2B_PI3K_class_II C2 domain second repeat present in class II phosphatidylinositol 3-kinases (PI3Ks). There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permut
Probab=99.81 E-value=1.8e-19 Score=144.08 Aligned_cols=104 Identities=18% Similarity=0.303 Sum_probs=85.9
Q ss_pred ccEEEEEEEeeeCCCCCCCCCCCCCeEEEEEECCc----CeEEeEeecCCCCCCeeceEEEEEe-cCCCccCCCcEEEEE
Q 047341 3 TQILEIILISAQGLKSPSSKMRRMQTYALVWIDSS----TKLCTRVDRAGAESPIWNEKFLFKV-TPEFLSSETSAISVE 77 (254)
Q Consensus 3 ~g~L~V~VisA~~L~~~~d~~G~~DPYV~V~l~~~----~k~rTkv~k~gt~NP~WNE~f~F~v-~~~~l~~~~~~L~ve 77 (254)
.+.|+|+|++|++|+.. + .+.+||||+|.+.+. .+.+|+++++ +.||+|||+|.|.+ +...+ ....|.|+
T Consensus 12 ~~~L~V~Vi~A~~L~~~-~-~~~~DpyVkv~l~~~~~~~~~~kT~v~~~-~~nP~wnE~F~f~~~~~~~l--~~~~L~~~ 86 (122)
T cd08381 12 NGTLFVMVMHAKNLPLL-D-GSDPDPYVKTYLLPDPQKTTKRKTKVVRK-TRNPTFNEMLVYDGLPVEDL--QQRVLQVS 86 (122)
T ss_pred CCEEEEEEEEeeCCCCC-C-CCCCCCEEEEEEeeCCccCCceeCCccCC-CCCCCcccEEEEecCChHHh--CCCEEEEE
Confidence 46899999999999998 7 889999999999752 4679999875 89999999999997 43222 46899999
Q ss_pred EEecC-CCCCceeEEEEEeCccccccCCCCCCeeEEEEe
Q 047341 78 IYASG-YLRDYLIGTVRFLVSNISLSVATKTPSFTAFQI 115 (254)
Q Consensus 78 V~D~d-~~~D~~LG~~~IpL~~l~~~~~~~~~~~~~~~L 115 (254)
|||++ ..++++||++.|+|.++..... ...||+|
T Consensus 87 V~d~d~~~~~~~lG~~~i~l~~l~~~~~----~~~W~~L 121 (122)
T cd08381 87 VWSHDSLVENEFLGGVCIPLKKLDLSQE----TEKWYPL 121 (122)
T ss_pred EEeCCCCcCCcEEEEEEEeccccccCCC----ccceEEC
Confidence 99999 5579999999999999875532 3467765
No 29
>cd04025 C2B_RasA1_RasA4 C2 domain second repeat present in RasA1 and RasA4. RasA1 and RasA4 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both proteins contain two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such a
Probab=99.81 E-value=5.9e-19 Score=140.26 Aligned_cols=116 Identities=22% Similarity=0.324 Sum_probs=95.5
Q ss_pred EEEEEEEeeeCCCCCCCCCCCCCeEEEEEECCcCeEEeEeecCCCCCCeeceEEEEEecCCCccCCCcEEEEEEEecC-C
Q 047341 5 ILEIILISAQGLKSPSSKMRRMQTYALVWIDSSTKLCTRVDRAGAESPIWNEKFLFKVTPEFLSSETSAISVEIYASG-Y 83 (254)
Q Consensus 5 ~L~V~VisA~~L~~~~d~~G~~DPYV~V~l~~~~k~rTkv~k~gt~NP~WNE~f~F~v~~~~l~~~~~~L~veV~D~d-~ 83 (254)
.|+|+|++|++|+.. +..+.+||||+|.+.+. +.+|+++++ +.||.|||+|.|.+... ....|.|+|||++ .
T Consensus 1 ~L~v~vi~a~~L~~~-d~~~~~DPyv~v~~~~~-~~kT~v~~~-t~nP~Wne~f~f~~~~~----~~~~l~~~v~d~~~~ 73 (123)
T cd04025 1 RLRCHVLEARDLAPK-DRNGTSDPFVRVFYNGQ-TLETSVVKK-SCYPRWNEVFEFELMEG----ADSPLSVEVWDWDLV 73 (123)
T ss_pred CEEEEEEEeeCCCCC-CCCCCcCceEEEEECCE-EEeceeecC-CCCCccCcEEEEEcCCC----CCCEEEEEEEECCCC
Confidence 489999999999988 77889999999999754 579999875 89999999999999762 3678999999998 4
Q ss_pred CCCceeEEEEEeCccccccCCCCCCeeEEEEeeC------CCCCcceEEEEEEE
Q 047341 84 LRDYLIGTVRFLVSNISLSVATKTPSFTAFQIRR------PSGRFQGVLSIGSM 131 (254)
Q Consensus 84 ~~D~~LG~~~IpL~~l~~~~~~~~~~~~~~~L~~------~~g~~~G~I~lsl~ 131 (254)
..+++||.+.++|.++..... ...||.|.. ++++..|.|+|.|+
T Consensus 74 ~~~~~iG~~~~~l~~l~~~~~----~~~w~~L~~~~~~~~~~~~~~G~l~~~~~ 123 (123)
T cd04025 74 SKNDFLGKVVFSIQTLQQAKQ----EEGWFRLLPDPRAEEESGGNLGSLRLKVR 123 (123)
T ss_pred CCCcEeEEEEEEHHHcccCCC----CCCEEECCCCCCCCccccCceEEEEEEeC
Confidence 568999999999999865432 245777764 25677899998763
No 30
>cd08373 C2A_Ferlin C2 domain first repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.80 E-value=1.6e-18 Score=138.58 Aligned_cols=117 Identities=17% Similarity=0.187 Sum_probs=96.9
Q ss_pred EEeeeCCCCCCCCCCCCCeEEEEEECCcCeEEeEeecCCCCCCeeceEEEEEecCCCccCCCcEEEEEEEecC-CCCCce
Q 047341 10 LISAQGLKSPSSKMRRMQTYALVWIDSSTKLCTRVDRAGAESPIWNEKFLFKVTPEFLSSETSAISVEIYASG-YLRDYL 88 (254)
Q Consensus 10 VisA~~L~~~~d~~G~~DPYV~V~l~~~~k~rTkv~k~gt~NP~WNE~f~F~v~~~~l~~~~~~L~veV~D~d-~~~D~~ 88 (254)
|++|++|++ ..|.+||||+|.+++. +++|++.++ +.||+|||+|.|.+.... .....|.|+|||++ ..+|++
T Consensus 2 vi~a~~L~~---~~g~~Dpyv~v~~~~~-~~kT~v~~~-~~nP~Wne~f~f~~~~~~--~~~~~l~~~v~d~~~~~~d~~ 74 (127)
T cd08373 2 VVSLKNLPG---LKGKGDRIAKVTFRGV-KKKTRVLEN-ELNPVWNETFEWPLAGSP--DPDESLEIVVKDYEKVGRNRL 74 (127)
T ss_pred eEEeeCCcc---cCCCCCCEEEEEECCE-eeecceeCC-CcCCcccceEEEEeCCCc--CCCCEEEEEEEECCCCCCCce
Confidence 789999998 4688999999999765 579999875 899999999999997521 25789999999998 457899
Q ss_pred eEEEEEeCccccccCCCCCCeeEEEEeeCCCCC-cceEEEEEEEEEeCCC
Q 047341 89 IGTVRFLVSNISLSVATKTPSFTAFQIRRPSGR-FQGVLSIGSMLIDGSD 137 (254)
Q Consensus 89 LG~~~IpL~~l~~~~~~~~~~~~~~~L~~~~g~-~~G~I~lsl~f~p~~~ 137 (254)
||++.++|.++..+.. ...+++|..++++ ..|+|+++++|.|...
T Consensus 75 iG~~~~~l~~l~~~~~----~~~~~~L~~~~~~~~~~~l~l~~~~~~~~~ 120 (127)
T cd08373 75 IGSATVSLQDLVSEGL----LEVTEPLLDSNGRPTGATISLEVSYQPPDG 120 (127)
T ss_pred EEEEEEEhhHcccCCc----eEEEEeCcCCCCCcccEEEEEEEEEeCCCC
Confidence 9999999999876442 4678999765554 5899999999998753
No 31
>cd08392 C2A_SLP-3 C2 domain first repeat present in Synaptotagmin-like protein 3. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. Little is known about the expression or localization of Slp3. The C2A domain of Slp3 is Ca2+ dependent. It has been demonstrated that Slp3 promotes dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids
Probab=99.80 E-value=7.1e-19 Score=142.07 Aligned_cols=108 Identities=19% Similarity=0.370 Sum_probs=88.0
Q ss_pred ccEEEEEEEeeeCCCCCCCCC-CCCCeEEEEEECCc----CeEEeEeecCCCCCCeeceEEEEEecCCCccCCCcEEEEE
Q 047341 3 TQILEIILISAQGLKSPSSKM-RRMQTYALVWIDSS----TKLCTRVDRAGAESPIWNEKFLFKVTPEFLSSETSAISVE 77 (254)
Q Consensus 3 ~g~L~V~VisA~~L~~~~d~~-G~~DPYV~V~l~~~----~k~rTkv~k~gt~NP~WNE~f~F~v~~~~l~~~~~~L~ve 77 (254)
.+.|.|+|++|+||+.. +.. |.+||||+|.+.|. .+.||++.++ +.||+|||+|.|.++...+ ....|.|.
T Consensus 14 ~~~L~V~V~~a~nL~~~-d~~~g~~dpYVkv~llp~~~~~~k~kT~v~~~-t~nPvfNE~F~f~v~~~~l--~~~~L~v~ 89 (128)
T cd08392 14 TSCLEITIKACRNLAYG-DEKKKKCHPYVKVCLLPDKSHNSKRKTAVKKG-TVNPVFNETLKYVVEADLL--SSRQLQVS 89 (128)
T ss_pred CCEEEEEEEecCCCCcc-CCCCCCCCeEEEEEEEeCCcccceeecccccC-CCCCccceEEEEEcCHHHh--CCcEEEEE
Confidence 57899999999999988 654 89999999999754 3679999875 9999999999999976433 46799999
Q ss_pred EEecC-CCCCceeEEEEEeCccccccCCCCCCeeEEEEe
Q 047341 78 IYASG-YLRDYLIGTVRFLVSNISLSVATKTPSFTAFQI 115 (254)
Q Consensus 78 V~D~d-~~~D~~LG~~~IpL~~l~~~~~~~~~~~~~~~L 115 (254)
|||.+ ..++++||++.|+|.++..... ......||+|
T Consensus 90 V~~~~~~~~~~~lG~~~i~L~~~~~~~~-~~~~~~W~~l 127 (128)
T cd08392 90 VWHSRTLKRRVFLGEVLIPLADWDFEDT-DSQRFLWYPL 127 (128)
T ss_pred EEeCCCCcCcceEEEEEEEcCCcccCCC-CccccceEEC
Confidence 99998 5678999999999999854431 1234678876
No 32
>cd08677 C2A_Synaptotagmin-13 C2 domain. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domain
Probab=99.79 E-value=6.5e-19 Score=140.65 Aligned_cols=92 Identities=15% Similarity=0.319 Sum_probs=79.6
Q ss_pred ccEEEEEEEeeeCCCCCCCCCCCCCeEEEEEECCc---CeEEeEeecCCCCCCeeceEEEEEecCCCccCCCcEEEEEEE
Q 047341 3 TQILEIILISAQGLKSPSSKMRRMQTYALVWIDSS---TKLCTRVDRAGAESPIWNEKFLFKVTPEFLSSETSAISVEIY 79 (254)
Q Consensus 3 ~g~L~V~VisA~~L~~~~d~~G~~DPYV~V~l~~~---~k~rTkv~k~gt~NP~WNE~f~F~v~~~~l~~~~~~L~veV~ 79 (254)
.+.|.|+|++|++|+ . + |.+||||+|.+.+. .+.+|+|.++ ++||+|||+|.|.|+.+.+ +...|.|.||
T Consensus 13 ~~~L~V~vikA~~L~-~-~--g~sDPYVKv~L~~~~k~~k~kT~v~rk-tlnPvfnE~f~F~v~~~~l--~~~tL~~~V~ 85 (118)
T cd08677 13 KAELHVNILEAENIS-V-D--AGCECYISGCVSVSEGQKEAQTALKKL-ALHTQWEEELVFPLPEEES--LDGTLTLTLR 85 (118)
T ss_pred CCEEEEEEEEecCCC-C-C--CCCCeEEEEEEcCCcCccEEEcceecC-CCCCccccEEEEeCCHHHh--CCcEEEEEEE
Confidence 478999999999999 3 2 56999999999752 5779999876 9999999999999987654 6889999999
Q ss_pred ecC-CCCCceeEEEEEeCccccc
Q 047341 80 ASG-YLRDYLIGTVRFLVSNISL 101 (254)
Q Consensus 80 D~d-~~~D~~LG~~~IpL~~l~~ 101 (254)
|+| ++++++||++.++++++..
T Consensus 86 d~Drfs~~d~IG~v~l~l~~~~~ 108 (118)
T cd08677 86 CCDRFSRHSTLGELRLKLADVSM 108 (118)
T ss_pred eCCCCCCCceEEEEEEccccccC
Confidence 999 6789999999999998633
No 33
>cd04017 C2D_Ferlin C2 domain fourth repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme
Probab=99.79 E-value=3.2e-18 Score=138.74 Aligned_cols=126 Identities=21% Similarity=0.294 Sum_probs=97.5
Q ss_pred EEEEEEEeeeCCCCCCCCCCCCCeEEEEEECCcCeEEeEeecCCCCCCeeceEEEEEecC-----CCccCCCcEEEEEEE
Q 047341 5 ILEIILISAQGLKSPSSKMRRMQTYALVWIDSSTKLCTRVDRAGAESPIWNEKFLFKVTP-----EFLSSETSAISVEIY 79 (254)
Q Consensus 5 ~L~V~VisA~~L~~~~d~~G~~DPYV~V~l~~~~k~rTkv~k~gt~NP~WNE~f~F~v~~-----~~l~~~~~~L~veV~ 79 (254)
.|+|+|++|++|+.. +..|.+||||+|.+.+. +.+|++.++ +.||+|||.|.|.+.. ..+......|.|+||
T Consensus 2 ~l~v~V~~a~~L~~~-d~~g~~dpyv~v~~~~~-~~kT~v~~~-t~nP~Wne~~~f~~~~~~~~~~~~~~~~~~l~v~V~ 78 (135)
T cd04017 2 QLRAYIYQARDLLAA-DKSGLSDPFARVSFLNQ-SQETEVIKE-TLSPTWDQTLIFDEVELYGSPEEIAQNPPLVVVELF 78 (135)
T ss_pred EEEEEEEEeecCcCC-CCCCCCCCEEEEEECCe-eeEeeeEcC-CCCCccCcEEEEeeeeccCChHHhhcCCCEEEEEEE
Confidence 589999999999998 88899999999999754 679999875 9999999999998532 001112367999999
Q ss_pred ecC-CCCCceeEEEEE-eCccccccCCCCCCeeEEEEeeCCCCCcceEEEEEEEEEeC
Q 047341 80 ASG-YLRDYLIGTVRF-LVSNISLSVATKTPSFTAFQIRRPSGRFQGVLSIGSMLIDG 135 (254)
Q Consensus 80 D~d-~~~D~~LG~~~I-pL~~l~~~~~~~~~~~~~~~L~~~~g~~~G~I~lsl~f~p~ 135 (254)
|++ ..+|++||++.+ |+..+... ..+.....|++|.. .+..+|+|.+++.+++.
T Consensus 79 d~d~~~~d~~iG~~~i~~~~~~~~~-~~~~~~~~W~~L~~-~~~~~Geil~~~~~~~~ 134 (135)
T cd04017 79 DQDSVGKDEFLGRSVAKPLVKLDLE-EDFPPKLQWFPIYK-GGQSAGELLAAFELIEV 134 (135)
T ss_pred eCcCCCCCccceEEEeeeeeecccC-CCCCCCceEEEeec-CCCchhheeEEeEEEEe
Confidence 999 456899999987 54444332 12334568999964 56789999999999864
No 34
>cd04029 C2A_SLP-4_5 C2 domain first repeat present in Synaptotagmin-like proteins 4 and 5. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp4/granuphilin promotes dense-core vesicle exocytosis. The C2A domain of Slp4 is Ca2+ dependent. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2
Probab=99.79 E-value=1.2e-18 Score=139.83 Aligned_cols=106 Identities=17% Similarity=0.353 Sum_probs=86.7
Q ss_pred cccEEEEEEEeeeCCCCCCCC-CCCCCeEEEEEECCc----CeEEeEeecCCCCCCeeceEEEEEecCCCccCCCcEEEE
Q 047341 2 ATQILEIILISAQGLKSPSSK-MRRMQTYALVWIDSS----TKLCTRVDRAGAESPIWNEKFLFKVTPEFLSSETSAISV 76 (254)
Q Consensus 2 ~~g~L~V~VisA~~L~~~~d~-~G~~DPYV~V~l~~~----~k~rTkv~k~gt~NP~WNE~f~F~v~~~~l~~~~~~L~v 76 (254)
..+.|.|+|++|+||+.. +. .|.+||||+|.+.+. .+.||+++++ +.||+|||+|.|.++.+.+ ....|.|
T Consensus 13 ~~~~L~V~Vi~a~~L~~~-~~~~~~~DpyVkv~l~p~~~~~~~~kT~v~~~-t~nP~wnE~f~f~i~~~~l--~~~~L~~ 88 (125)
T cd04029 13 KTQSLNVHVKECRNLAYG-DEAKKRSNPYVKTYLLPDKSRQSKRKTSIKRN-TTNPVYNETLKYSISHSQL--ETRTLQL 88 (125)
T ss_pred CCCeEEEEEEEecCCCcc-CCCCCCCCcEEEEEEEcCCccccceEeeeeeC-CCCCcccceEEEECCHHHh--CCCEEEE
Confidence 357899999999999987 44 588999999999652 3569999875 8999999999999976432 4678999
Q ss_pred EEEecC-CCCCceeEEEEEeCccccccCCCCCCeeEEEEe
Q 047341 77 EIYASG-YLRDYLIGTVRFLVSNISLSVATKTPSFTAFQI 115 (254)
Q Consensus 77 eV~D~d-~~~D~~LG~~~IpL~~l~~~~~~~~~~~~~~~L 115 (254)
+|||++ ..++++||++.|+|.++..... ...||+|
T Consensus 89 ~V~d~~~~~~~~~lG~~~i~l~~~~~~~~----~~~w~~l 124 (125)
T cd04029 89 SVWHYDRFGRNTFLGEVEIPLDSWNFDSQ----HEECLPL 124 (125)
T ss_pred EEEECCCCCCCcEEEEEEEeCCcccccCC----cccEEEC
Confidence 999999 5678999999999999866543 3467776
No 35
>cd08393 C2A_SLP-1_2 C2 domain first repeat present in Synaptotagmin-like proteins 1 and 2. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike Slp3 and Slp4/granuphilin which are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety
Probab=99.79 E-value=9.4e-19 Score=140.34 Aligned_cols=105 Identities=21% Similarity=0.324 Sum_probs=86.3
Q ss_pred ccEEEEEEEeeeCCCCCCCCC-CCCCeEEEEEECCc----CeEEeEeecCCCCCCeeceEEEEEecCCCccCCCcEEEEE
Q 047341 3 TQILEIILISAQGLKSPSSKM-RRMQTYALVWIDSS----TKLCTRVDRAGAESPIWNEKFLFKVTPEFLSSETSAISVE 77 (254)
Q Consensus 3 ~g~L~V~VisA~~L~~~~d~~-G~~DPYV~V~l~~~----~k~rTkv~k~gt~NP~WNE~f~F~v~~~~l~~~~~~L~ve 77 (254)
.+.|+|+|++|+||+.. +.. |.+||||+|.+.+. .+.+|+++++ +.||+|||+|.|.++...+ ....|.|+
T Consensus 14 ~~~L~V~vi~a~~L~~~-d~~~g~~dpyVkv~l~p~~~~~~~~kT~v~~~-t~nP~~nE~f~f~v~~~~l--~~~~L~~~ 89 (125)
T cd08393 14 LRELHVHVIQCQDLAAA-DPKKQRSDPYVKTYLLPDKSNRGKRKTSVKKK-TLNPVFNETLRYKVEREEL--PTRVLNLS 89 (125)
T ss_pred CCEEEEEEEEeCCCCCc-CCCCCCCCcEEEEEEEcCCCccccccCccCcC-CCCCccCceEEEECCHHHh--CCCEEEEE
Confidence 46899999999999998 665 89999999999642 3569999875 8999999999999975333 46799999
Q ss_pred EEecC-CCCCceeEEEEEeCccccccCCCCCCeeEEEEe
Q 047341 78 IYASG-YLRDYLIGTVRFLVSNISLSVATKTPSFTAFQI 115 (254)
Q Consensus 78 V~D~d-~~~D~~LG~~~IpL~~l~~~~~~~~~~~~~~~L 115 (254)
|||.+ ..++++||++.|+|.++..... ...||+|
T Consensus 90 V~d~~~~~~~~~iG~~~i~L~~~~~~~~----~~~W~~L 124 (125)
T cd08393 90 VWHRDSLGRNSFLGEVEVDLGSWDWSNT----QPTWYPL 124 (125)
T ss_pred EEeCCCCCCCcEeEEEEEecCccccCCC----CcceEEC
Confidence 99998 5578999999999999855432 3467765
No 36
>cd08394 C2A_Munc13 C2 domain first repeat in Munc13 (mammalian uncoordinated) proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi
Probab=99.78 E-value=2.2e-18 Score=139.12 Aligned_cols=101 Identities=22% Similarity=0.387 Sum_probs=84.3
Q ss_pred ccEEEEEEEeeeCCCCCCCCCCCCCeEEEEEECCcCeEEeEeecCCCCCCeeceEEEEEecCCCccCCCcEEEEEEEecC
Q 047341 3 TQILEIILISAQGLKSPSSKMRRMQTYALVWIDSSTKLCTRVDRAGAESPIWNEKFLFKVTPEFLSSETSAISVEIYASG 82 (254)
Q Consensus 3 ~g~L~V~VisA~~L~~~~d~~G~~DPYV~V~l~~~~k~rTkv~k~gt~NP~WNE~f~F~v~~~~l~~~~~~L~veV~D~d 82 (254)
++.|.|+|++|++|... + ..||||+|.+++ .+.+|++.+ +.||.|||.|.|.+.. ....|.|+|||++
T Consensus 1 m~~L~V~Vv~Ar~L~~~-~---~~dPYV~Ik~g~-~k~kT~v~~--~~nP~WnE~F~F~~~~-----~~~~L~v~V~dkd 68 (127)
T cd08394 1 MSLLCVLVKKAKLDGAP-D---KFNTYVTLKVQN-VKSTTIAVR--GSQPCWEQDFMFEINR-----LDLGLVIELWNKG 68 (127)
T ss_pred CceEEEEEEEeeCCCCC-C---CCCCeEEEEECC-EEeEeeECC--CCCCceeeEEEEEEcC-----CCCEEEEEEEeCC
Confidence 46899999999999775 3 458999999965 577998885 3699999999999976 3566999999999
Q ss_pred CCCCceeEEEEEeCccccccCCCCCCeeEEEEeeC
Q 047341 83 YLRDYLIGTVRFLVSNISLSVATKTPSFTAFQIRR 117 (254)
Q Consensus 83 ~~~D~~LG~~~IpL~~l~~~~~~~~~~~~~~~L~~ 117 (254)
..+|++||++.|||+++..+.. .....||+|..
T Consensus 69 ~~~DD~lG~v~i~L~~v~~~~~--~~~~~Wy~L~~ 101 (127)
T cd08394 69 LIWDTLVGTVWIPLSTIRQSNE--EGPGEWLTLDS 101 (127)
T ss_pred CcCCCceEEEEEEhHHcccCCC--CCCCccEecCh
Confidence 7799999999999999987754 33367898864
No 37
>cd04040 C2D_Tricalbin-like C2 domain fourth repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.78 E-value=3.6e-18 Score=133.79 Aligned_cols=113 Identities=19% Similarity=0.342 Sum_probs=94.7
Q ss_pred EEEEEEeeeCCCCCCCCCCCCCeEEEEEECCcCeEEeEeecCCCCCCeeceEEEEEecCCCccCCCcEEEEEEEecC-CC
Q 047341 6 LEIILISAQGLKSPSSKMRRMQTYALVWIDSSTKLCTRVDRAGAESPIWNEKFLFKVTPEFLSSETSAISVEIYASG-YL 84 (254)
Q Consensus 6 L~V~VisA~~L~~~~d~~G~~DPYV~V~l~~~~k~rTkv~k~gt~NP~WNE~f~F~v~~~~l~~~~~~L~veV~D~d-~~ 84 (254)
|+|+|++|++|+.. +..+.+||||+|.+++....+|+++.+ +.||+|||+|.|.+... ....|.|+|||++ ..
T Consensus 1 l~v~vi~a~~L~~~-~~~~~~dpyv~v~~~~~~~~~T~v~~~-~~~P~Wne~f~~~~~~~----~~~~l~~~v~d~~~~~ 74 (115)
T cd04040 1 LTVDVISAENLPSA-DRNGKSDPFVKFYLNGEKVFKTKTIKK-TLNPVWNESFEVPVPSR----VRAVLKVEVYDWDRGG 74 (115)
T ss_pred CEEEEEeeeCCCCC-CCCCCCCCeEEEEECCCcceeeceecC-CCCCcccccEEEEeccC----CCCEEEEEEEeCCCCC
Confidence 68999999999988 678899999999998766679999865 99999999999999752 3689999999998 45
Q ss_pred CCceeEEEEEeCccccccCCCCCCeeEEEEeeCCCCCcceEEEE
Q 047341 85 RDYLIGTVRFLVSNISLSVATKTPSFTAFQIRRPSGRFQGVLSI 128 (254)
Q Consensus 85 ~D~~LG~~~IpL~~l~~~~~~~~~~~~~~~L~~~~g~~~G~I~l 128 (254)
++++||++.+++.++..+.. ...+++|...++...|.|.+
T Consensus 75 ~~~~iG~~~~~l~~l~~~~~----~~~~~~L~~~g~~~~~~~~~ 114 (115)
T cd04040 75 KDDLLGSAYIDLSDLEPEET----TELTLPLDGQGGGKLGAVFL 114 (115)
T ss_pred CCCceEEEEEEHHHcCCCCc----EEEEEECcCCCCccCceEEc
Confidence 78999999999999876432 46788887666677887754
No 38
>cd04028 C2B_RIM1alpha C2 domain second repeat contained in Rab3-interacting molecule (RIM) proteins. RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as
Probab=99.78 E-value=2.9e-18 Score=141.76 Aligned_cols=106 Identities=20% Similarity=0.385 Sum_probs=87.2
Q ss_pred ccEEEEEEEeeeCCCCCCCCCCCCCeEEEEEECCc----CeEEeEeecCCCCCCeeceEEEEEecCCCccCCCcEEEEEE
Q 047341 3 TQILEIILISAQGLKSPSSKMRRMQTYALVWIDSS----TKLCTRVDRAGAESPIWNEKFLFKVTPEFLSSETSAISVEI 78 (254)
Q Consensus 3 ~g~L~V~VisA~~L~~~~d~~G~~DPYV~V~l~~~----~k~rTkv~k~gt~NP~WNE~f~F~v~~~~l~~~~~~L~veV 78 (254)
.+.|+|+|++|+||....+..|.+||||++.+.+. .+.||+++++ ++||+|||+|.|.+.. ....|.|+|
T Consensus 28 ~~~L~V~Vi~ArnL~~~~~~~g~sDPYVKv~Llp~~~~~~k~KT~v~kk-tlnPvfNE~F~f~v~l-----~~~~L~v~V 101 (146)
T cd04028 28 KGQLEVEVIRARGLVQKPGSKVLPAPYVKVYLLEGKKCIAKKKTKIARK-TLDPLYQQQLVFDVSP-----TGKTLQVIV 101 (146)
T ss_pred CCEEEEEEEEeeCCCcccCCCCCcCCeEEEEEECCCccccceeceecCC-CCCCccCCeEEEEEcC-----CCCEEEEEE
Confidence 47899999999999876235688999999999653 3679999875 9999999999999973 588999999
Q ss_pred E-ecC-CCCCceeEEEEEeCccccccCCCCCCeeEEEEeeCC
Q 047341 79 Y-ASG-YLRDYLIGTVRFLVSNISLSVATKTPSFTAFQIRRP 118 (254)
Q Consensus 79 ~-D~d-~~~D~~LG~~~IpL~~l~~~~~~~~~~~~~~~L~~~ 118 (254)
| |.+ ..++++||++.|+|+++..... ...||+|..+
T Consensus 102 ~~d~~~~~~~~~iG~~~i~L~~l~~~~~----~~~Wy~L~~~ 139 (146)
T cd04028 102 WGDYGRMDKKVFMGVAQILLDDLDLSNL----VIGWYKLFPT 139 (146)
T ss_pred EeCCCCCCCCceEEEEEEEcccccCCCC----ceeEEecCCc
Confidence 9 566 4578999999999999854432 3579998753
No 39
>cd04027 C2B_Munc13 C2 domain second repeat in Munc13 (mammalian uncoordinated) proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrev
Probab=99.78 E-value=5e-18 Score=136.28 Aligned_cols=112 Identities=22% Similarity=0.351 Sum_probs=92.4
Q ss_pred EEEEEEEeeeCCCCCCCCCCCCCeEEEEEECCcCeEEeEeecCCCCCCeeceEEEEEecCCCccCCCcEEEEEEEecCC-
Q 047341 5 ILEIILISAQGLKSPSSKMRRMQTYALVWIDSSTKLCTRVDRAGAESPIWNEKFLFKVTPEFLSSETSAISVEIYASGY- 83 (254)
Q Consensus 5 ~L~V~VisA~~L~~~~d~~G~~DPYV~V~l~~~~k~rTkv~k~gt~NP~WNE~f~F~v~~~~l~~~~~~L~veV~D~d~- 83 (254)
.|+|+|++|++|+.. +..|..||||+|.+++ .+.+|+++++ +.||.|||.|.|.+.. ....|.|+|||++.
T Consensus 2 ~L~V~vi~a~~L~~~-d~~g~~DPyv~v~~~~-~~~kT~~v~~-t~~P~Wne~f~f~~~~-----~~~~l~i~v~d~d~~ 73 (127)
T cd04027 2 KISITVVCAQGLIAK-DKTGTSDPYVTVQVGK-TKKRTKTIPQ-NLNPVWNEKFHFECHN-----SSDRIKVRVWDEDDD 73 (127)
T ss_pred eEEEEEEECcCCcCC-CCCCCcCcEEEEEECC-EeeecceecC-CCCCccceEEEEEecC-----CCCEEEEEEEECCCC
Confidence 689999999999998 7889999999999965 4679998875 8999999999999865 35689999999873
Q ss_pred -----------CCCceeEEEEEeCccccccCCCCCCeeEEEEeeCC--CCCcceEEEEEE
Q 047341 84 -----------LRDYLIGTVRFLVSNISLSVATKTPSFTAFQIRRP--SGRFQGVLSIGS 130 (254)
Q Consensus 84 -----------~~D~~LG~~~IpL~~l~~~~~~~~~~~~~~~L~~~--~g~~~G~I~lsl 130 (254)
..+++||.+.|++.++... ...||.|... .+..+|+|.+++
T Consensus 74 ~~~~~~~~~~~~~~~~iG~~~i~l~~~~~~------~~~w~~L~~~~~~~~~~G~i~~~~ 127 (127)
T cd04027 74 IKSRLKQKFTRESDDFLGQTIIEVRTLSGE------MDVWYNLEKRTDKSAVSGAIRLHI 127 (127)
T ss_pred cccccceeccccCCCcceEEEEEhHHccCC------CCeEEECccCCCCCcEeEEEEEEC
Confidence 3589999999999887422 2478888643 346899999874
No 40
>cd04049 C2_putative_Elicitor-responsive_gene C2 domain present in the putative elicitor-responsive gene. In plants elicitor-responsive proteins are triggered in response to specific elicitor molecules such as glycolproteins, peptides, carbohydrates and lipids. A host of defensive responses are also triggered resulting in localized cell death. Antimicrobial secondary metabolites, such as phytoalexins, or defense-related proteins, including pathogenesis-related (PR) proteins are also produced. There is a single C2 domain present here. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contai
Probab=99.78 E-value=3.2e-18 Score=136.22 Aligned_cols=98 Identities=22% Similarity=0.408 Sum_probs=82.2
Q ss_pred cEEEEEEEeeeCCCCCCCCCCCCCeEEEEEECCcCeEEeEeecCCCCCCeeceEEEEEecCCCccCCCcEEEEEEEecC-
Q 047341 4 QILEIILISAQGLKSPSSKMRRMQTYALVWIDSSTKLCTRVDRAGAESPIWNEKFLFKVTPEFLSSETSAISVEIYASG- 82 (254)
Q Consensus 4 g~L~V~VisA~~L~~~~d~~G~~DPYV~V~l~~~~k~rTkv~k~gt~NP~WNE~f~F~v~~~~l~~~~~~L~veV~D~d- 82 (254)
|.|+|+|++|++|++. +..+.+||||+|++.+. ..+|++.++++.||+|||.|.|.+..... .....|.|+|||.+
T Consensus 1 g~L~V~V~~A~~L~~~-~~~~~~dpyv~v~~~~~-~~~T~~~~~~t~nP~Wne~f~f~v~~~~~-~~~~~l~v~V~d~~~ 77 (124)
T cd04049 1 GTLEVLLISAKGLQDT-DFLGKIDPYVIIQCRTQ-ERKSKVAKGDGRNPEWNEKFKFTVEYPGW-GGDTKLILRIMDKDN 77 (124)
T ss_pred CeEEEEEEecCCCCCC-CCCCCcCceEEEEECCE-eeeeeEcCCCCCCCcccceEEEEecCccc-CCCCEEEEEEEECcc
Confidence 6899999999999988 77889999999999755 45888876568999999999999986310 12578999999998
Q ss_pred CCCCceeEEEEEeCccccccCC
Q 047341 83 YLRDYLIGTVRFLVSNISLSVA 104 (254)
Q Consensus 83 ~~~D~~LG~~~IpL~~l~~~~~ 104 (254)
..+|++||++.|+|.++...+.
T Consensus 78 ~~~d~~iG~~~i~l~~l~~~~~ 99 (124)
T cd04049 78 FSDDDFIGEATIHLKGLFEEGV 99 (124)
T ss_pred CCCCCeEEEEEEEhHHhhhCCC
Confidence 5579999999999999886543
No 41
>cd04039 C2_PSD C2 domain present in Phosphatidylserine decarboxylase (PSD). PSD is involved in the biosynthesis of aminophospholipid by converting phosphatidylserine (PtdSer) to phosphatidylethanolamine (PtdEtn). There is a single C2 domain present and it is thought to confer PtdSer binding motif that is common to PKC and synaptotagmin. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM
Probab=99.78 E-value=3.2e-18 Score=134.36 Aligned_cols=95 Identities=16% Similarity=0.249 Sum_probs=80.2
Q ss_pred cEEEEEEEeeeCCCCCCCCC----CCCCeEEEEEECCcCeEEeEeecCCCCCCeeceEEEEEecCCCccCCCcEEEEEEE
Q 047341 4 QILEIILISAQGLKSPSSKM----RRMQTYALVWIDSSTKLCTRVDRAGAESPIWNEKFLFKVTPEFLSSETSAISVEIY 79 (254)
Q Consensus 4 g~L~V~VisA~~L~~~~d~~----G~~DPYV~V~l~~~~k~rTkv~k~gt~NP~WNE~f~F~v~~~~l~~~~~~L~veV~ 79 (254)
|+|.|+|++|++|+.. +.. +.+||||+|.+++ .++||+++++ +.||+|||.|.|.+.... ....|.|+||
T Consensus 1 g~l~v~v~~A~~L~~~-~~~~~~~~~~DPYv~v~~~~-~~~kT~v~~~-t~nPvWne~f~f~v~~~~---~~~~L~~~V~ 74 (108)
T cd04039 1 GVVFMEIKSITDLPPL-KNMTRTGFDMDPFVIISFGR-RVFRTSWRRH-TLNPVFNERLAFEVYPHE---KNFDIQFKVL 74 (108)
T ss_pred CEEEEEEEeeeCCCCc-cccCCCCCccCceEEEEECC-EeEeeeeecC-CCCCcccceEEEEEeCcc---CCCEEEEEEE
Confidence 6899999999999987 422 3589999999964 4679999976 899999999999986532 3568999999
Q ss_pred ecC-CCCCceeEEEEEeCccccccCC
Q 047341 80 ASG-YLRDYLIGTVRFLVSNISLSVA 104 (254)
Q Consensus 80 D~d-~~~D~~LG~~~IpL~~l~~~~~ 104 (254)
|++ ..+|++||++.++|.++..+..
T Consensus 75 D~d~~~~dd~IG~~~l~L~~l~~~~~ 100 (108)
T cd04039 75 DKDKFSFNDYVATGSLSVQELLNAAP 100 (108)
T ss_pred ECCCCCCCcceEEEEEEHHHHHhhCC
Confidence 999 5679999999999999987664
No 42
>cd08387 C2A_Synaptotagmin-8 C2A domain first repeat present in Synaptotagmin 8. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involv
Probab=99.78 E-value=3.3e-18 Score=136.11 Aligned_cols=106 Identities=25% Similarity=0.367 Sum_probs=88.3
Q ss_pred ccEEEEEEEeeeCCCCCCCCCCCCCeEEEEEECC--cCeEEeEeecCCCCCCeeceEEEEEecCCCccCCCcEEEEEEEe
Q 047341 3 TQILEIILISAQGLKSPSSKMRRMQTYALVWIDS--STKLCTRVDRAGAESPIWNEKFLFKVTPEFLSSETSAISVEIYA 80 (254)
Q Consensus 3 ~g~L~V~VisA~~L~~~~d~~G~~DPYV~V~l~~--~~k~rTkv~k~gt~NP~WNE~f~F~v~~~~l~~~~~~L~veV~D 80 (254)
.+.|.|+|++|++|+.. +..|.+||||+|.+.+ ....+|++.++ +.||+|||+|.|.+....+ ....|.|+|||
T Consensus 15 ~~~L~V~v~~a~~L~~~-d~~g~~dpyv~v~l~~~~~~~~kT~v~~~-t~~P~wne~f~f~v~~~~l--~~~~l~i~V~d 90 (124)
T cd08387 15 MGILNVKLIQARNLQPR-DFSGTADPYCKVRLLPDRSNTKQSKIHKK-TLNPEFDESFVFEVPPQEL--PKRTLEVLLYD 90 (124)
T ss_pred CCEEEEEEEEeeCCCCC-CCCCCCCCeEEEEEecCCCCcEeCceEcC-CCCCCcccEEEEeCCHHHh--CCCEEEEEEEE
Confidence 47899999999999988 7889999999999953 45679999875 9999999999999876322 35789999999
Q ss_pred cC-CCCCceeEEEEEeCccccccCCCCCCeeEEEEee
Q 047341 81 SG-YLRDYLIGTVRFLVSNISLSVATKTPSFTAFQIR 116 (254)
Q Consensus 81 ~d-~~~D~~LG~~~IpL~~l~~~~~~~~~~~~~~~L~ 116 (254)
++ ..+|++||++.|+|+++..+.. ...||.|.
T Consensus 91 ~~~~~~~~~iG~~~i~l~~~~~~~~----~~~W~~l~ 123 (124)
T cd08387 91 FDQFSRDECIGVVELPLAEVDLSEK----LDLWRKIQ 123 (124)
T ss_pred CCCCCCCceeEEEEEecccccCCCC----cceEEECc
Confidence 98 4579999999999999875543 35688764
No 43
>cd04050 C2B_Synaptotagmin-like C2 domain second repeat present in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm
Probab=99.77 E-value=2.6e-18 Score=133.30 Aligned_cols=102 Identities=19% Similarity=0.309 Sum_probs=86.4
Q ss_pred EEEEEEEeeeCCCCCCCCCCCCCeEEEEEECCcCeEEeEeecCCCCCCeeceEEEEEecCCCccCCCcEEEEEEEecCCC
Q 047341 5 ILEIILISAQGLKSPSSKMRRMQTYALVWIDSSTKLCTRVDRAGAESPIWNEKFLFKVTPEFLSSETSAISVEIYASGYL 84 (254)
Q Consensus 5 ~L~V~VisA~~L~~~~d~~G~~DPYV~V~l~~~~k~rTkv~k~gt~NP~WNE~f~F~v~~~~l~~~~~~L~veV~D~d~~ 84 (254)
.|.|+|++|++|+.. +..+.+||||+|.+++ ++.+|++.++ +.||+|||.|.|.+... ....|.|+|||.+.
T Consensus 1 ~L~V~v~~A~~L~~~-~~~~~~dpyv~v~~~~-~~~kT~v~~~-t~nP~Wne~f~f~v~~~----~~~~l~v~v~d~~~- 72 (105)
T cd04050 1 LLFVYLDSAKNLPLA-KSTKEPSPYVELTVGK-TTQKSKVKER-TNNPVWEEGFTFLVRNP----ENQELEIEVKDDKT- 72 (105)
T ss_pred CEEEEEeeecCCCCc-ccCCCCCcEEEEEECC-EEEeCccccC-CCCCcccceEEEEeCCC----CCCEEEEEEEECCC-
Confidence 488999999999988 7789999999999986 5679999864 89999999999999863 36789999999886
Q ss_pred CCceeEEEEEeCccccccCCCCCCeeEEEEeeC
Q 047341 85 RDYLIGTVRFLVSNISLSVATKTPSFTAFQIRR 117 (254)
Q Consensus 85 ~D~~LG~~~IpL~~l~~~~~~~~~~~~~~~L~~ 117 (254)
|++||++.|+|.++..... .....||+|..
T Consensus 73 -~~~iG~~~i~l~~l~~~~~--~~~~~w~~L~~ 102 (105)
T cd04050 73 -GKSLGSLTLPLSELLKEPD--LTLDQPFPLDN 102 (105)
T ss_pred -CCccEEEEEEHHHhhcccc--ceeeeeEecCC
Confidence 8999999999999876541 23467888864
No 44
>cd08680 C2_Kibra C2 domain found in Human protein Kibra. Kibra is thought to be a regulator of the Salvador (Sav)/Warts (Wts)/Hippo (Hpo) (SWH) signaling network, which limits tissue growth by inhibiting cell proliferation and promoting apoptosis. The core of the pathway consists of a MST and LATS family kinase cascade that ultimately phosphorylates and inactivates the YAP/Yorkie (Yki) transcription coactivator. The FERM domain proteins Merlin (Mer) and Expanded (Ex) are part of the upstream regulation controlling pathway mechanism. Kibra colocalizes and associates with Mer and Ex and is thought to transduce an extracellular signal via the SWH network. The apical scaffold machinery that contains Hpo, Wts, and Ex recruits Yki to the apical membrane facilitating its inhibitory phosphorlyation by Wts. Since Kibra associates with Ex and is apically located it is hypothesized that KIBRA is part of the scaffold, helps in the Hpo/Wts complex, and helps recruit Yki for inactivation that prom
Probab=99.77 E-value=1.9e-18 Score=139.05 Aligned_cols=106 Identities=16% Similarity=0.216 Sum_probs=87.5
Q ss_pred ccEEEEEEEeeeCCCCCCCCCCCCCeEEEEEECCc-----CeEEeEeecCCCCCCeeceEEEEEecCCCccCCCcEEEEE
Q 047341 3 TQILEIILISAQGLKSPSSKMRRMQTYALVWIDSS-----TKLCTRVDRAGAESPIWNEKFLFKVTPEFLSSETSAISVE 77 (254)
Q Consensus 3 ~g~L~V~VisA~~L~~~~d~~G~~DPYV~V~l~~~-----~k~rTkv~k~gt~NP~WNE~f~F~v~~~~l~~~~~~L~ve 77 (254)
.+.|.|+|++|+||+.. +..|.+||||++.+.|. .+.+|++.++ +.||+|||+|.|+|+.+.+ ....|.|.
T Consensus 13 ~~~L~V~V~~arnL~~~-~~~~~~dpyVKv~Llp~~~~~~~~~kT~v~~~-t~nPvfnE~F~f~v~~~~L--~~~~L~~~ 88 (124)
T cd08680 13 DSSLVISVEQLRNLSAL-SIPENSKVYVRVALLPCSSSTSCLFRTKALED-QDKPVFNEVFRVPISSTKL--YQKTLQVD 88 (124)
T ss_pred CCEEEEEEeEecCCccc-ccCCCCCeEEEEEEccCCCCCCceEEcCccCC-CCCCccccEEEEECCHHHh--hcCEEEEE
Confidence 46899999999999998 77789999999999753 3689999876 9999999999999987544 67899999
Q ss_pred EEecC-CCCCceeEEEEEeCccccccCCCCCCeeEEEEe
Q 047341 78 IYASG-YLRDYLIGTVRFLVSNISLSVATKTPSFTAFQI 115 (254)
Q Consensus 78 V~D~d-~~~D~~LG~~~IpL~~l~~~~~~~~~~~~~~~L 115 (254)
||+.+ ..++++||++.|+|.++..... ....||.|
T Consensus 89 V~~~~~~~~~~~lG~~~i~L~~~~~~~~---~~~~Wy~l 124 (124)
T cd08680 89 VCSVGPDQQEECLGGAQISLADFESSEE---MSTKWYNL 124 (124)
T ss_pred EEeCCCCCceeEEEEEEEEhhhccCCCc---cccccccC
Confidence 99998 4578999999999999854432 12456543
No 45
>cd04041 C2A_fungal C2 domain first repeat; fungal group. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligan
Probab=99.77 E-value=2.8e-18 Score=134.58 Aligned_cols=96 Identities=19% Similarity=0.317 Sum_probs=80.6
Q ss_pred cEEEEEEEeeeCCCCCCCCC-CCCCeEEEEEECC--cCeEEeEeecCCCCCCeeceEEEEEecCCCccCCCcEEEEEEEe
Q 047341 4 QILEIILISAQGLKSPSSKM-RRMQTYALVWIDS--STKLCTRVDRAGAESPIWNEKFLFKVTPEFLSSETSAISVEIYA 80 (254)
Q Consensus 4 g~L~V~VisA~~L~~~~d~~-G~~DPYV~V~l~~--~~k~rTkv~k~gt~NP~WNE~f~F~v~~~~l~~~~~~L~veV~D 80 (254)
|+|+|+|++|++|+.. +.. +.+||||+|.+.+ ....+|+++++ ++||+|||.|.|.+....+ .....|.|+|||
T Consensus 1 G~L~V~v~~a~~L~~~-d~~~~~~Dpyv~v~~~~~~~~~~kT~v~~~-t~nP~Wne~f~f~~~~~~~-~~~~~l~~~V~d 77 (111)
T cd04041 1 GVLVVTIHRATDLPKA-DFGTGSSDPYVTASFAKFGKPLYSTRIIRK-DLNPVWEETWFVLVTPDEV-KAGERLSCRLWD 77 (111)
T ss_pred CEEEEEEEEeeCCCcc-cCCCCCCCccEEEEEccCCCccEeeeeECC-CCCCccceeEEEEeCchhc-cCCCEEEEEEEe
Confidence 6899999999999998 777 8999999999954 34679999876 8999999999998865211 125789999999
Q ss_pred cC-CCCCceeEEEEEeCcccccc
Q 047341 81 SG-YLRDYLIGTVRFLVSNISLS 102 (254)
Q Consensus 81 ~d-~~~D~~LG~~~IpL~~l~~~ 102 (254)
++ ...|++||++.+++.++...
T Consensus 78 ~d~~~~dd~lG~~~i~l~~l~~~ 100 (111)
T cd04041 78 SDRFTADDRLGRVEIDLKELIED 100 (111)
T ss_pred CCCCCCCCcceEEEEEHHHHhcC
Confidence 99 55789999999999998743
No 46
>cd04043 C2_Munc13_fungal C2 domain in Munc13 (mammalian uncoordinated) proteins; fungal group. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synap
Probab=99.77 E-value=2.1e-17 Score=131.57 Aligned_cols=119 Identities=18% Similarity=0.232 Sum_probs=96.0
Q ss_pred EEEEEEEeeeCCCCCCCCCCCCCeEEEEEECCc--CeEEeEeecCCCCCCeeceEEEEEecCCCccCCCcEEEEEEEecC
Q 047341 5 ILEIILISAQGLKSPSSKMRRMQTYALVWIDSS--TKLCTRVDRAGAESPIWNEKFLFKVTPEFLSSETSAISVEIYASG 82 (254)
Q Consensus 5 ~L~V~VisA~~L~~~~d~~G~~DPYV~V~l~~~--~k~rTkv~k~gt~NP~WNE~f~F~v~~~~l~~~~~~L~veV~D~d 82 (254)
.|.|+|++|++|+.. +..+.+||||+|.+.+. ...+|++.++ +.||.|||+|.|.+... ....|.|+|||++
T Consensus 2 ~~~V~v~~a~~L~~~-~~~~~~Dpyv~v~~~~~~~~~~kT~~~~~-t~~P~Wne~f~f~i~~~----~~~~L~i~v~d~d 75 (126)
T cd04043 2 LFTIRIVRAENLKAD-SSNGLSDPYVTLVDTNGKRRIAKTRTIYD-TLNPRWDEEFELEVPAG----EPLWISATVWDRS 75 (126)
T ss_pred EEEEEEEEeECCCCC-CCCCCCCceEEEEECCCCeeeecccEecC-CCCCcccceEEEEcCCC----CCCEEEEEEEECC
Confidence 689999999999998 78899999999998643 3569999875 89999999999999763 3678999999999
Q ss_pred C-CCCceeEEEEEeCccccccCCCCCCeeEEEEeeCCCCCcceEEEEEEEEEeC
Q 047341 83 Y-LRDYLIGTVRFLVSNISLSVATKTPSFTAFQIRRPSGRFQGVLSIGSMLIDG 135 (254)
Q Consensus 83 ~-~~D~~LG~~~IpL~~l~~~~~~~~~~~~~~~L~~~~g~~~G~I~lsl~f~p~ 135 (254)
. ..+++||++.++|.++..... +.....|+.|. .+|.|++.+.+...
T Consensus 76 ~~~~~~~iG~~~i~l~~~~~~~~-~~~~~~w~~l~-----~~g~i~l~~~~~~~ 123 (126)
T cd04043 76 FVGKHDLCGRASLKLDPKRFGDD-GLPREIWLDLD-----TQGRLLLRVSMEGE 123 (126)
T ss_pred CCCCCceEEEEEEecCHHHcCCC-CCCceEEEEcC-----CCCeEEEEEEEeee
Confidence 4 478999999999987644321 22345788874 26889999988754
No 47
>cd04045 C2C_Tricalbin-like C2 domain third repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.77 E-value=8e-18 Score=134.20 Aligned_cols=103 Identities=19% Similarity=0.264 Sum_probs=88.3
Q ss_pred cEEEEEEEeeeCCCCCCCCCCCCCeEEEEEECCcCeEEeEeecCCCCCCeeceEEEEEecCCCccCCCcEEEEEEEecC-
Q 047341 4 QILEIILISAQGLKSPSSKMRRMQTYALVWIDSSTKLCTRVDRAGAESPIWNEKFLFKVTPEFLSSETSAISVEIYASG- 82 (254)
Q Consensus 4 g~L~V~VisA~~L~~~~d~~G~~DPYV~V~l~~~~k~rTkv~k~gt~NP~WNE~f~F~v~~~~l~~~~~~L~veV~D~d- 82 (254)
|.|+|+|++|++|++. +..+.+||||+|.+++..+.+|++.++ +.||.|||.|.|.+.. ....|.|+|||++
T Consensus 1 g~L~V~Vi~a~~L~~~-d~~g~~DPYv~v~~~~~~~~kT~~~~~-t~~P~Wne~f~~~v~~-----~~~~L~v~v~d~~~ 73 (120)
T cd04045 1 GVLRLHIRKANDLKNL-EGVGKIDPYVRVLVNGIVKGRTVTISN-TLNPVWDEVLYVPVTS-----PNQKITLEVMDYEK 73 (120)
T ss_pred CeEEEEEEeeECCCCc-cCCCCcCCEEEEEECCEEeeceeEECC-CcCCccCceEEEEecC-----CCCEEEEEEEECCC
Confidence 6899999999999998 788999999999998766779988765 9999999999999875 3679999999998
Q ss_pred CCCCceeEEEEEeCccccccCCCCCCeeEEEEeeCC
Q 047341 83 YLRDYLIGTVRFLVSNISLSVATKTPSFTAFQIRRP 118 (254)
Q Consensus 83 ~~~D~~LG~~~IpL~~l~~~~~~~~~~~~~~~L~~~ 118 (254)
...|++||++.++|.++..... ..||.+.+.
T Consensus 74 ~~~d~~IG~~~~~l~~l~~~~~-----~~~~~~~~~ 104 (120)
T cd04045 74 VGKDRSLGSVEINVSDLIKKNE-----DGKYVEYDD 104 (120)
T ss_pred CCCCCeeeEEEEeHHHhhCCCC-----CceEEecCC
Confidence 5578999999999999987632 467777653
No 48
>cd08385 C2A_Synaptotagmin-1-5-6-9-10 C2A domain first repeat present in Synaptotagmins 1, 5, 6, 9, and 10. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis as do synaptotagmins 5, 6, and 10. It is distinguished from the other synaptotagmins by having an N-glycosylated N-terminus. Synaptotagmins 5, 6, and 10, members of class 3 synaptotagmins, are located primarily in the brain and localized to the active zone and plasma membrane. They is distinguished from the other synaptotagmins by having disulfide bonds at its N-terminus. Synaptotagmin 6 also regulates the acrosome reaction, a unique Ca2+-regulated exocytosis, in sperm. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and
Probab=99.77 E-value=4.6e-18 Score=135.16 Aligned_cols=105 Identities=24% Similarity=0.346 Sum_probs=86.4
Q ss_pred ccEEEEEEEeeeCCCCCCCCCCCCCeEEEEEECCc--CeEEeEeecCCCCCCeeceEEEEEecCCCccCCCcEEEEEEEe
Q 047341 3 TQILEIILISAQGLKSPSSKMRRMQTYALVWIDSS--TKLCTRVDRAGAESPIWNEKFLFKVTPEFLSSETSAISVEIYA 80 (254)
Q Consensus 3 ~g~L~V~VisA~~L~~~~d~~G~~DPYV~V~l~~~--~k~rTkv~k~gt~NP~WNE~f~F~v~~~~l~~~~~~L~veV~D 80 (254)
.+.|+|+|++|++|+.. +..+.+||||+|.+.+. .+.+|++.++ +.||+|||.|.|.+....+ ....|.|+|||
T Consensus 15 ~~~L~V~v~~a~~L~~~-d~~~~~dpyv~v~l~~~~~~~~kT~v~~~-t~nP~wne~f~f~i~~~~l--~~~~l~~~V~d 90 (124)
T cd08385 15 SNQLTVGIIQAADLPAM-DMGGTSDPYVKVYLLPDKKKKFETKVHRK-TLNPVFNETFTFKVPYSEL--GNKTLVFSVYD 90 (124)
T ss_pred CCEEEEEEEEeeCCCCc-cCCCCCCCEEEEEEEcCCCCceecccCcC-CCCCceeeeEEEeCCHHHh--CCCEEEEEEEe
Confidence 47899999999999988 78889999999999653 4679998865 8999999999999875222 35789999999
Q ss_pred cC-CCCCceeEEEEEeCccccccCCCCCCeeEEEEe
Q 047341 81 SG-YLRDYLIGTVRFLVSNISLSVATKTPSFTAFQI 115 (254)
Q Consensus 81 ~d-~~~D~~LG~~~IpL~~l~~~~~~~~~~~~~~~L 115 (254)
++ +.++++||++.|+|.++..+.. ...|++|
T Consensus 91 ~d~~~~~~~lG~~~i~l~~~~~~~~----~~~W~~l 122 (124)
T cd08385 91 FDRFSKHDLIGEVRVPLLTVDLGHV----TEEWRDL 122 (124)
T ss_pred CCCCCCCceeEEEEEecCcccCCCC----cceEEEc
Confidence 98 5578999999999999865432 3467765
No 49
>cd04010 C2B_RasA3 C2 domain second repeat present in RAS p21 protein activator 3 (RasA3). RasA3 are members of GTPase activating protein 1 (GAP1), a Ras-specific GAP, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA3 contains an N-terminal C2 domain, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain
Probab=99.77 E-value=4.6e-18 Score=140.81 Aligned_cols=106 Identities=21% Similarity=0.300 Sum_probs=82.6
Q ss_pred EEEEEEEeeeCCCCCCCCCCCCCeEEEEEECCc----CeEEeEeecCCCCCCeeceEEEEEecCC-----------CccC
Q 047341 5 ILEIILISAQGLKSPSSKMRRMQTYALVWIDSS----TKLCTRVDRAGAESPIWNEKFLFKVTPE-----------FLSS 69 (254)
Q Consensus 5 ~L~V~VisA~~L~~~~d~~G~~DPYV~V~l~~~----~k~rTkv~k~gt~NP~WNE~f~F~v~~~-----------~l~~ 69 (254)
.|.|+|++|++|... .|.+||||+|.+.+. .+.+|+++++ +.||+|||+|.|.+... .-..
T Consensus 1 kL~V~Vi~ArnL~~~---~g~sDPYV~V~l~~~~~k~~~~kT~v~~~-t~nP~wNE~F~F~v~~~~~~~~~~~~~~~~~~ 76 (148)
T cd04010 1 KLSVRVIECSDLALK---NGTCDPYASVTLIYSNKKQDTKRTKVKKK-TNNPQFDEAFYFDVTIDSSPEKKQFEMPEEDA 76 (148)
T ss_pred CEEEEEEeCcCCCCC---CCCCCceEEEEEeCCcccCcccCCccEeC-CCCCccceEEEEEEecccccccccccCCcccc
Confidence 489999999999873 588999999999763 4568999875 99999999999999510 0001
Q ss_pred CCcEEEEEEEecC-CCCCceeEEEEEeCccccccCCCCCCeeEEEEeeC
Q 047341 70 ETSAISVEIYASG-YLRDYLIGTVRFLVSNISLSVATKTPSFTAFQIRR 117 (254)
Q Consensus 70 ~~~~L~veV~D~d-~~~D~~LG~~~IpL~~l~~~~~~~~~~~~~~~L~~ 117 (254)
....|.|+|||++ ..+|+|||++.|+|.++..... ....||+|..
T Consensus 77 ~~~~L~i~V~d~~~~~~ddfLG~v~i~l~~l~~~~~---~~~~W~~L~~ 122 (148)
T cd04010 77 EKLELRVDLWHASMGGGDVFLGEVRIPLRGLDLQAG---SHQAWYFLQP 122 (148)
T ss_pred cEEEEEEEEEcCCCCCCCceeEEEEEecccccccCC---cCcceeecCC
Confidence 2467999999998 4579999999999999876511 1357888854
No 50
>cd04030 C2C_KIAA1228 C2 domain third repeat present in uncharacterized human KIAA1228-like proteins. KIAA proteins are uncharacterized human proteins. They were compiled by the Kazusa mammalian cDNA project which identified more than 2000 human genes. They are identified by 4 digit codes that precede the KIAA designation. Many KIAA genes are still functionally uncharacterized including KIAA1228. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1
Probab=99.76 E-value=6.9e-18 Score=134.39 Aligned_cols=105 Identities=22% Similarity=0.286 Sum_probs=87.0
Q ss_pred ccEEEEEEEeeeCCCCCCCCCCCCCeEEEEEECC----cCeEEeEeecCCCCCCeeceEEEEEecCCCccCCCcEEEEEE
Q 047341 3 TQILEIILISAQGLKSPSSKMRRMQTYALVWIDS----STKLCTRVDRAGAESPIWNEKFLFKVTPEFLSSETSAISVEI 78 (254)
Q Consensus 3 ~g~L~V~VisA~~L~~~~d~~G~~DPYV~V~l~~----~~k~rTkv~k~gt~NP~WNE~f~F~v~~~~l~~~~~~L~veV 78 (254)
.+.|+|+|++|++|+.. +..+.+||||+|.+.+ ..+.+|+++++ +.||+|||+|.|.+....+ ....|.|.|
T Consensus 15 ~~~L~V~vi~a~~L~~~-~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~-~~nP~wne~f~f~i~~~~l--~~~~l~i~v 90 (127)
T cd04030 15 RQKLIVTVHKCRNLPPC-DSSDIPDPYVRLYLLPDKSKSTRRKTSVKKD-NLNPVFDETFEFPVSLEEL--KRRTLDVAV 90 (127)
T ss_pred CCEEEEEEEEEECCCCc-cCCCCCCceEEEEEEcCCCCCceEecccccC-CCCCEECeEEEEecCHHHh--cCCEEEEEE
Confidence 47899999999999998 7889999999999964 35679999875 8999999999999976322 357899999
Q ss_pred EecCC---CCCceeEEEEEeCccccccCCCCCCeeEEEEe
Q 047341 79 YASGY---LRDYLIGTVRFLVSNISLSVATKTPSFTAFQI 115 (254)
Q Consensus 79 ~D~d~---~~D~~LG~~~IpL~~l~~~~~~~~~~~~~~~L 115 (254)
||.+. .+|++||++.|+|.++..+.. ...||.|
T Consensus 91 ~~~~~~~~~~~~~iG~~~i~l~~l~~~~~----~~~W~~L 126 (127)
T cd04030 91 KNSKSFLSREKKLLGQVLIDLSDLDLSKG----FTQWYDL 126 (127)
T ss_pred EECCcccCCCCceEEEEEEecccccccCC----ccceEEC
Confidence 99984 478999999999999865432 3567765
No 51
>cd04021 C2_E3_ubiquitin_ligase C2 domain present in E3 ubiquitin ligase. E3 ubiquitin ligase is part of the ubiquitylation mechanism responsible for controlling surface expression of membrane proteins. The sequential action of several enzymes are involved: ubiquitin-activating enzyme E1, ubiquitin-conjugating enzyme E2, and ubiquitin-protein ligase E3 which is responsible for substrate recognition and promoting the transfer of ubiquitin to the target protein. E3 ubiquitin ligase is composed of an N-terminal C2 domain, 4 WW domains, and a HECTc domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction e
Probab=99.76 E-value=2.6e-17 Score=131.95 Aligned_cols=118 Identities=27% Similarity=0.340 Sum_probs=94.0
Q ss_pred cEEEEEEEeeeCCCCCCCCCCCCCeEEEEEECCcCeEEeEeecCCCCCCeeceEEEEEecCCCccCCCcEEEEEEEecC-
Q 047341 4 QILEIILISAQGLKSPSSKMRRMQTYALVWIDSSTKLCTRVDRAGAESPIWNEKFLFKVTPEFLSSETSAISVEIYASG- 82 (254)
Q Consensus 4 g~L~V~VisA~~L~~~~d~~G~~DPYV~V~l~~~~k~rTkv~k~gt~NP~WNE~f~F~v~~~~l~~~~~~L~veV~D~d- 82 (254)
..|+|+|++|+ |... +..+.+||||+|.+++....+|++.++ +.||.|||.|.|.+.. ...|.|+|||++
T Consensus 2 ~~L~V~i~~a~-l~~~-~~~~~~dPyv~v~~~~~~~~kT~v~~~-t~~P~Wne~f~~~~~~------~~~l~~~V~d~~~ 72 (125)
T cd04021 2 SQLQITVESAK-LKSN-SKSFKPDPYVEVTVDGQPPKKTEVSKK-TSNPKWNEHFTVLVTP------QSTLEFKVWSHHT 72 (125)
T ss_pred ceEEEEEEeeE-CCCC-CcCCCCCeEEEEEECCcccEEeeeeCC-CCCCccccEEEEEeCC------CCEEEEEEEeCCC
Confidence 46999999999 5544 457899999999998765779999865 9999999999999864 678999999999
Q ss_pred CCCCceeEEEEEeCccccccCCCCCC-eeEEEEeeCC---CCCcceEEEEEE
Q 047341 83 YLRDYLIGTVRFLVSNISLSVATKTP-SFTAFQIRRP---SGRFQGVLSIGS 130 (254)
Q Consensus 83 ~~~D~~LG~~~IpL~~l~~~~~~~~~-~~~~~~L~~~---~g~~~G~I~lsl 130 (254)
...|++||++.++|.++......... ...++++..+ ++...|+|.+.+
T Consensus 73 ~~~~~~iG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~ 124 (125)
T cd04021 73 LKADVLLGEASLDLSDILKNHNGKLENVKLTLNLSSENKGSSVKVGELTVIL 124 (125)
T ss_pred CCCCcEEEEEEEEHHHhHhhcCCCccceEEEEEEEccCCCcceeeeeEEEEe
Confidence 45789999999999998765431111 2357888654 347799999875
No 52
>cd08685 C2_RGS-like C2 domain of the Regulator Of G-Protein Signaling (RGS) family. This CD contains members of the regulator of G-protein signaling (RGS) family. RGS is a GTPase activating protein which inhibits G-protein mediated signal transduction. The protein is largely cytosolic, but G-protein activation leads to translocation of this protein to the plasma membrane. A nuclear form of this protein has also been described, but its sequence has not been identified. There are multiple alternatively spliced transcript variants in this family with some members having additional domains (ex. PDZ and RGS) downstream of the C2 domain. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind pho
Probab=99.76 E-value=3.6e-18 Score=136.17 Aligned_cols=103 Identities=17% Similarity=0.260 Sum_probs=83.5
Q ss_pred ccEEEEEEEeeeCCCCCCCCCCCCCeEEEEEECCc----CeEEeEeecCCCCCCeeceEEEEEecCCCccCCCcEEEEEE
Q 047341 3 TQILEIILISAQGLKSPSSKMRRMQTYALVWIDSS----TKLCTRVDRAGAESPIWNEKFLFKVTPEFLSSETSAISVEI 78 (254)
Q Consensus 3 ~g~L~V~VisA~~L~~~~d~~G~~DPYV~V~l~~~----~k~rTkv~k~gt~NP~WNE~f~F~v~~~~l~~~~~~L~veV 78 (254)
.+.|.|+|++|+||++. + .|.+||||+|.+.+. .+.||++.++ +.||+|||+|.|.+....+ ...|.|.|
T Consensus 11 ~~~L~V~Vi~ar~L~~~-~-~g~~dpYVkv~l~p~~~~~~~~kT~v~~~-t~~P~~nE~F~f~v~~~~~---~~~l~v~V 84 (119)
T cd08685 11 NRKLTLHVLEAKGLRST-N-SGTCNSYVKISLSPDKEVRFRQKTSTVPD-SANPLFHETFSFDVNERDY---QKRLLVTV 84 (119)
T ss_pred CCEEEEEEEEEECCCCC-C-CCCCCeeEEEEEEeCCCCcceEeCccccC-CCCCccccEEEEEcChHHh---CCEEEEEE
Confidence 46899999999999988 6 789999999999763 3568998865 9999999999999976332 35788999
Q ss_pred EecCC-C-CCceeEEEEEeCccccccCCCCCCeeEEEEe
Q 047341 79 YASGY-L-RDYLIGTVRFLVSNISLSVATKTPSFTAFQI 115 (254)
Q Consensus 79 ~D~d~-~-~D~~LG~~~IpL~~l~~~~~~~~~~~~~~~L 115 (254)
||.+. . ++++||.+.|||.++..+.. ...||.|
T Consensus 85 ~~~~~~~~~~~~lG~~~i~l~~~~~~~~----~~~Wy~l 119 (119)
T cd08685 85 WNKLSKSRDSGLLGCMSFGVKSIVNQKE----ISGWYYL 119 (119)
T ss_pred ECCCCCcCCCEEEEEEEecHHHhccCcc----ccceEeC
Confidence 99883 3 47899999999999974432 3467764
No 53
>cd08691 C2_NEDL1-like C2 domain present in NEDL1 (NEDD4-like ubiquitin protein ligase-1). NEDL1 (AKA HECW1(HECT, C2 and WW domain containing E3 ubiquitin protein ligase 1)) is a newly identified HECT-type E3 ubiquitin protein ligase highly expressed in favorable neuroblastomas. In vertebrates it is found primarily in neuronal tissues, including the spinal cord. NEDL1 is thought to normally function in the quality control of cellular proteins by eliminating misfolded proteins. This is thought to be accomplished via a mechanism analogous to that of ER-associated degradation by forming tight complexes and aggregating misfolded proteins that have escaped ubiquitin-mediated degradation. NEDL1, is composed of a C2 domain, two WW domains, and a ubiquitin ligase Hect domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are C
Probab=99.76 E-value=3.1e-17 Score=134.26 Aligned_cols=116 Identities=17% Similarity=0.269 Sum_probs=93.5
Q ss_pred EEEEEEEeeeCCCCCCCCCCCCCeEEEEEECCc------------CeEEeEeecCCCCCCee-ceEEEEEecCCCccCCC
Q 047341 5 ILEIILISAQGLKSPSSKMRRMQTYALVWIDSS------------TKLCTRVDRAGAESPIW-NEKFLFKVTPEFLSSET 71 (254)
Q Consensus 5 ~L~V~VisA~~L~~~~d~~G~~DPYV~V~l~~~------------~k~rTkv~k~gt~NP~W-NE~f~F~v~~~~l~~~~ 71 (254)
++.|++++|++|+ . +.+|++||||++.+.+. ++++|+++++ ++||+| ||+|.|.+.. +
T Consensus 2 ~~~~~~~~A~~L~-~-~~fg~~DPyvki~~~~~~~~~~~~~~~~~~~~kT~v~~~-tlnP~W~nE~f~f~v~~------~ 72 (137)
T cd08691 2 SFSLSGLQARNLK-K-GMFFNPDPYVKISIQPGKRHIFPALPHHGQECRTSIVEN-TINPVWHREQFVFVGLP------T 72 (137)
T ss_pred EEEEEEEEeCCCC-C-ccCCCCCceEEEEEECCCcccccccccccceeeeeeEcC-CCCCceEceEEEEEcCC------C
Confidence 4679999999998 5 67899999999999652 2679999875 899999 9999999964 5
Q ss_pred cEEEEEEEecCCC----CCceeEEEEEeCccccccCCCCCCeeEEEEeeCC--CCCcceEEEEEE
Q 047341 72 SAISVEIYASGYL----RDYLIGTVRFLVSNISLSVATKTPSFTAFQIRRP--SGRFQGVLSIGS 130 (254)
Q Consensus 72 ~~L~veV~D~d~~----~D~~LG~~~IpL~~l~~~~~~~~~~~~~~~L~~~--~g~~~G~I~lsl 130 (254)
..|.|+|||++.. .|++||.+.|||.++..+... .....+|++... .+...|+|.+.+
T Consensus 73 ~~L~v~V~D~~~~~~~~~~d~lG~~~i~l~~l~~~~~~-~~~~~~~~l~k~~~~s~v~G~~~l~~ 136 (137)
T cd08691 73 DVLEIEVKDKFAKSRPIIRRFLGKLSIPVQRLLERHAI-GDQELSYTLGRRTPTDHVSGQLTFRF 136 (137)
T ss_pred CEEEEEEEecCCCCCccCCceEEEEEEEHHHhcccccC-CceEEEEECCcCCCCCcEEEEEEEEe
Confidence 6899999997632 279999999999999876532 225678888643 457899998875
No 54
>cd08688 C2_KIAA0528-like C2 domain found in the Human KIAA0528 cDNA clone. The members of this CD are named after the Human KIAA0528 cDNA clone. All members here contain a single C2 repeat. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/a
Probab=99.76 E-value=7.3e-18 Score=131.97 Aligned_cols=106 Identities=21% Similarity=0.273 Sum_probs=86.3
Q ss_pred EEEEEEeeeCCCCCCC-CCCCCCeEEEEEECCcCeEEeEeecCCCCCCee-ceEEEEEecCCCccCCCcEEEEEEEecCC
Q 047341 6 LEIILISAQGLKSPSS-KMRRMQTYALVWIDSSTKLCTRVDRAGAESPIW-NEKFLFKVTPEFLSSETSAISVEIYASGY 83 (254)
Q Consensus 6 L~V~VisA~~L~~~~d-~~G~~DPYV~V~l~~~~k~rTkv~k~gt~NP~W-NE~f~F~v~~~~l~~~~~~L~veV~D~d~ 83 (254)
|+|+|++|++|+.. + ..|.+||||+|.+++ .++||+++++ +.||+| ||.|.|.+....+ ....|.|+|||++.
T Consensus 1 l~V~v~~a~~L~~~-d~~~~~~Dpyv~v~~~~-~~~kT~v~~~-~~nP~W~ne~f~f~i~~~~l--~~~~l~i~V~d~d~ 75 (110)
T cd08688 1 LKVRVVAARDLPVM-DRSSDLTDAFVEVKFGS-TTYKTDVVKK-SLNPVWNSEWFRFEVDDEEL--QDEPLQIRVMDHDT 75 (110)
T ss_pred CEEEEEEEECCCcc-ccCCCCCCceEEEEECC-eeEecceecC-CCCCcccCcEEEEEcChHHc--CCCeEEEEEEeCCC
Confidence 68999999999987 5 468899999999976 5789999875 899999 9999999976322 35789999999994
Q ss_pred -CCCceeEEEEEeCccccccCCCCCCeeEEEEeeC
Q 047341 84 -LRDYLIGTVRFLVSNISLSVATKTPSFTAFQIRR 117 (254)
Q Consensus 84 -~~D~~LG~~~IpL~~l~~~~~~~~~~~~~~~L~~ 117 (254)
.+|++||++.++|.++..... ......||+|.+
T Consensus 76 ~~~~~~iG~~~~~l~~l~~~~~-~~~~~~w~~l~~ 109 (110)
T cd08688 76 YSANDAIGKVYIDLNPLLLKDS-VSQISGWFPIYD 109 (110)
T ss_pred CCCCCceEEEEEeHHHhcccCC-ccccCCeEEccc
Confidence 568999999999999887421 122457888753
No 55
>cd08521 C2A_SLP C2 domain first repeat present in Synaptotagmin-like proteins. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into
Probab=99.75 E-value=9.3e-18 Score=132.76 Aligned_cols=105 Identities=20% Similarity=0.389 Sum_probs=85.7
Q ss_pred ccEEEEEEEeeeCCCCCCC-CCCCCCeEEEEEECCc----CeEEeEeecCCCCCCeeceEEEEEecCCCccCCCcEEEEE
Q 047341 3 TQILEIILISAQGLKSPSS-KMRRMQTYALVWIDSS----TKLCTRVDRAGAESPIWNEKFLFKVTPEFLSSETSAISVE 77 (254)
Q Consensus 3 ~g~L~V~VisA~~L~~~~d-~~G~~DPYV~V~l~~~----~k~rTkv~k~gt~NP~WNE~f~F~v~~~~l~~~~~~L~ve 77 (254)
.+.|+|+|++|++|+.. + ..+.+||||+|.+.+. .+.+|++.++ +.||+|||+|.|.+....+ ....|.|+
T Consensus 13 ~~~L~V~v~~a~~L~~~-~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~-t~~P~wne~f~f~i~~~~l--~~~~l~i~ 88 (123)
T cd08521 13 TGSLEVHIKECRNLAYA-DEKKKRSNPYVKVYLLPDKSKQSKRKTSVKKN-TTNPVFNETLKYHISKSQL--ETRTLQLS 88 (123)
T ss_pred CCEEEEEEEEecCCCCc-CCCCCCCCcEEEEEEecCCCcCceeeccccCC-CCCCcccceEEEeCCHHHh--CCCEEEEE
Confidence 57899999999999988 6 6789999999998543 4579998764 9999999999999876322 36789999
Q ss_pred EEecC-CCCCceeEEEEEeCccccccCCCCCCeeEEEEe
Q 047341 78 IYASG-YLRDYLIGTVRFLVSNISLSVATKTPSFTAFQI 115 (254)
Q Consensus 78 V~D~d-~~~D~~LG~~~IpL~~l~~~~~~~~~~~~~~~L 115 (254)
|||.+ ..++++||++.++|.++..+.. ...||+|
T Consensus 89 v~d~~~~~~~~~iG~~~i~l~~l~~~~~----~~~w~~l 123 (123)
T cd08521 89 VWHHDRFGRNTFLGEVEIPLDSWDLDSQ----QSEWYPL 123 (123)
T ss_pred EEeCCCCcCCceeeEEEEecccccccCC----CccEEEC
Confidence 99998 5578999999999999864432 3567765
No 56
>cd08388 C2A_Synaptotagmin-4-11 C2A domain first repeat present in Synaptotagmins 4 and 11. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmins 4 and 11, class 4 synaptotagmins, are located in the brain. Their functions are unknown. They are distinguished from the other synaptotagmins by having and Asp to Ser substitution in their C2A domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence
Probab=99.75 E-value=1.7e-17 Score=133.76 Aligned_cols=107 Identities=21% Similarity=0.309 Sum_probs=84.0
Q ss_pred ccEEEEEEEeeeCCCCCCCCC-CCCCeEEEEEECC--cCeEEeEeecCCCCCCeeceEEEE-EecCCCccCCCcEEEEEE
Q 047341 3 TQILEIILISAQGLKSPSSKM-RRMQTYALVWIDS--STKLCTRVDRAGAESPIWNEKFLF-KVTPEFLSSETSAISVEI 78 (254)
Q Consensus 3 ~g~L~V~VisA~~L~~~~d~~-G~~DPYV~V~l~~--~~k~rTkv~k~gt~NP~WNE~f~F-~v~~~~l~~~~~~L~veV 78 (254)
...|+|+|++|++|+.. +.. |.+||||+|.+.+ .++.||+++++ +.||+|||+|.| .++...+ ....|.|+|
T Consensus 15 ~~~L~V~Vi~a~~L~~~-~~~~~~~DpyV~v~l~~~~~~~~kT~v~~~-t~nP~wnE~F~f~~~~~~~~--~~~~L~~~V 90 (128)
T cd08388 15 KKALLVNIIECRDLPAM-DEQSGTSDPYVKLQLLPEKEHKVKTRVLRK-TRNPVYDETFTFYGIPYNQL--QDLSLHFAV 90 (128)
T ss_pred CCEEEEEEEEeECCCCC-CCCCCCcCCEEEEEEeCCcCceeeccEEcC-CCCCceeeEEEEcccCHHHh--CCCEEEEEE
Confidence 46899999999999988 665 8999999999964 34669999876 999999999999 4654221 356899999
Q ss_pred EecC-CCCCceeEEEEEeCccccccCCCCCCeeEEEEe
Q 047341 79 YASG-YLRDYLIGTVRFLVSNISLSVATKTPSFTAFQI 115 (254)
Q Consensus 79 ~D~d-~~~D~~LG~~~IpL~~l~~~~~~~~~~~~~~~L 115 (254)
||++ ..+|++||++.|+|.++..... .....|+++
T Consensus 91 ~d~d~~~~d~~lG~~~i~L~~l~~~~~--~~~~~~~~~ 126 (128)
T cd08388 91 LSFDRYSRDDVIGEVVCPLAGADLLNE--GELLVSREI 126 (128)
T ss_pred EEcCCCCCCceeEEEEEeccccCCCCC--ceEEEEEec
Confidence 9998 5679999999999999865532 123455554
No 57
>cd08690 C2_Freud-1 C2 domain found in 5' repressor element under dual repression binding protein-1 (Freud-1). Freud-1 is a novel calcium-regulated repressor that negatively regulates basal 5-HT1A receptor expression in neurons. It may also play a role in the altered regulation of 5-HT1A receptors associated with anxiety or major depression. Freud-1 contains two DM-14 basic repeats, a helix-loop-helix DNA binding domain, and a C2 domain. The Freud-1 C2 domain is thought to be calcium insensitive and it lacks several acidic residues that mediate calcium binding of the PKC C2 domain. In addition, it contains a poly-basic insert that is not present in calcium-dependent C2 domains and may function as a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules tha
Probab=99.75 E-value=5.1e-17 Score=135.57 Aligned_cols=125 Identities=18% Similarity=0.282 Sum_probs=97.4
Q ss_pred EEEEEEEeeeC--CCCCCCCCCCCCeEEEEEE----CCcCeEEeEeecCCCCCCeeceEEEEEecCCC---c-cCCCcEE
Q 047341 5 ILEIILISAQG--LKSPSSKMRRMQTYALVWI----DSSTKLCTRVDRAGAESPIWNEKFLFKVTPEF---L-SSETSAI 74 (254)
Q Consensus 5 ~L~V~VisA~~--L~~~~d~~G~~DPYV~V~l----~~~~k~rTkv~k~gt~NP~WNE~f~F~v~~~~---l-~~~~~~L 74 (254)
..+|+|+.|.+ |+.. +..+.+||||++.+ ...++.||+++++ ++||+|||+|.|.|+... . ......|
T Consensus 3 ~~el~i~~~~~~~l~~~-~~~~~~DpYVk~~l~~p~~~~~k~KT~v~k~-TlnPvfNE~f~f~I~~~~~~~~R~l~~~~L 80 (155)
T cd08690 3 SIELTIVRCIGIPLPSG-WNPKDLDTYVKFEFPYPNEEPQSGKTSTIKD-TNSPEYNESFKLNINRKHRSFQRVFKRHGL 80 (155)
T ss_pred ceEEEEEEeeccccCCC-cCCCCCCeEEEEEEecCCCCCceeecCcccC-CCCCcccceEEEEeccccchhhhhccCCcE
Confidence 46788888888 4555 56788999999997 2346789999876 999999999999997631 0 0135679
Q ss_pred EEEEEecC-C-CCCceeEEEEEeCccccccCCCCCCeeEEEEeeCCCCCcceEEEEEEEEEeC
Q 047341 75 SVEIYASG-Y-LRDYLIGTVRFLVSNISLSVATKTPSFTAFQIRRPSGRFQGVLSIGSMLIDG 135 (254)
Q Consensus 75 ~veV~D~d-~-~~D~~LG~~~IpL~~l~~~~~~~~~~~~~~~L~~~~g~~~G~I~lsl~f~p~ 135 (254)
.|+|||.+ + .+|++||++.|+|..+..... ...+++|.+......|.|++.++...+
T Consensus 81 ~~~V~d~~~f~~~D~~iG~~~i~L~~l~~~~~----~~~~~~L~~~~k~~Gg~l~v~ir~r~p 139 (155)
T cd08690 81 KFEVYHKGGFLRSDKLLGTAQVKLEPLETKCE----IHESVDLMDGRKATGGKLEVKVRLREP 139 (155)
T ss_pred EEEEEeCCCcccCCCeeEEEEEEcccccccCc----ceEEEEhhhCCCCcCCEEEEEEEecCC
Confidence 99999998 4 369999999999999866543 245888876556678899999998754
No 58
>cd00275 C2_PLC_like C2 domain present in Phosphoinositide-specific phospholipases C (PLC). PLCs are involved in the hydrolysis of phosphatidylinositol-4,5-bisphosphate (PIP2) to d-myo-inositol-1,4,5-trisphosphate (1,4,5-IP3) and sn-1,2-diacylglycerol (DAG). 1,4,5-IP3 and DAG are second messengers in eukaryotic signal transduction cascades. PLC is composed of a N-terminal PH domain followed by a series of EF hands, a catalytic TIM barrel and a C-terminal C2 domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking
Probab=99.75 E-value=6e-17 Score=128.66 Aligned_cols=117 Identities=25% Similarity=0.344 Sum_probs=95.2
Q ss_pred cEEEEEEEeeeCCCCCCC--CCCCCCeEEEEEECC-----cCeEEeEeecCCCCCCeeceEEEEEecCCCccCCCcEEEE
Q 047341 4 QILEIILISAQGLKSPSS--KMRRMQTYALVWIDS-----STKLCTRVDRAGAESPIWNEKFLFKVTPEFLSSETSAISV 76 (254)
Q Consensus 4 g~L~V~VisA~~L~~~~d--~~G~~DPYV~V~l~~-----~~k~rTkv~k~gt~NP~WNE~f~F~v~~~~l~~~~~~L~v 76 (254)
-.|+|+|++|++|+.. + ..+..||||+|++.+ ..+.+|+++++++.||.|||+|.|.+... ....|.|
T Consensus 2 ~~l~v~vi~a~~L~~~-~~~~~~~~dpyv~v~l~~~~~~~~~~~kT~~~~~~~~~P~w~e~f~f~~~~~----~~~~l~~ 76 (128)
T cd00275 2 LTLTIKIISGQQLPKP-KGDKGSIVDPYVEVEIHGLPADDSAKFKTKVVKNNGFNPVWNETFEFDVTVP----ELAFLRF 76 (128)
T ss_pred eEEEEEEEeeecCCCC-CCCCCCccCCEEEEEEEeCCCCCCCcEeeeeecCCCcCCccCCcEEEEEeCC----CeEEEEE
Confidence 3689999999999987 5 578899999999953 34579998876556999999999998752 3467999
Q ss_pred EEEecCCCCCceeEEEEEeCccccccCCCCCCeeEEEEeeCCCC--CcceEEEEEEEE
Q 047341 77 EIYASGYLRDYLIGTVRFLVSNISLSVATKTPSFTAFQIRRPSG--RFQGVLSIGSML 132 (254)
Q Consensus 77 eV~D~d~~~D~~LG~~~IpL~~l~~~~~~~~~~~~~~~L~~~~g--~~~G~I~lsl~f 132 (254)
+|||.+..++++||++.++|.++..+ ..+++|..++| ...|.|.+.+++
T Consensus 77 ~V~d~~~~~~~~iG~~~~~l~~l~~g-------~~~~~l~~~~~~~~~~~~l~v~~~~ 127 (128)
T cd00275 77 VVYDEDSGDDDFLGQACLPLDSLRQG-------YRHVPLLDSKGEPLELSTLFVHIDI 127 (128)
T ss_pred EEEeCCCCCCcEeEEEEEEhHHhcCc-------eEEEEecCCCCCCCcceeEEEEEEE
Confidence 99999855899999999999998543 35788887666 457899988876
No 59
>cd04031 C2A_RIM1alpha C2 domain first repeat contained in Rab3-interacting molecule (RIM) proteins. RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as
Probab=99.74 E-value=1.9e-17 Score=131.40 Aligned_cols=104 Identities=17% Similarity=0.265 Sum_probs=83.6
Q ss_pred ccEEEEEEEeeeCCCCCCCCCCCCCeEEEEEECC----cCeEEeEeecCCCCCCeeceEEEEEecC-CCccCCCcEEEEE
Q 047341 3 TQILEIILISAQGLKSPSSKMRRMQTYALVWIDS----STKLCTRVDRAGAESPIWNEKFLFKVTP-EFLSSETSAISVE 77 (254)
Q Consensus 3 ~g~L~V~VisA~~L~~~~d~~G~~DPYV~V~l~~----~~k~rTkv~k~gt~NP~WNE~f~F~v~~-~~l~~~~~~L~ve 77 (254)
.+.|.|+|++|++|+.. +..+.+||||+|.+.+ ..+.+|+++++ +.||+|||+|.|.+.. ..+ ....|.|+
T Consensus 15 ~~~L~V~vi~a~~L~~~-~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~-t~nP~wne~f~f~~~~~~~l--~~~~l~~~ 90 (125)
T cd04031 15 TSQLIVTVLQARDLPPR-DDGSLRNPYVKVYLLPDRSEKSKRRTKTVKK-TLNPEWNQTFEYSNVRRETL--KERTLEVT 90 (125)
T ss_pred CCEEEEEEEEecCCCCc-CCCCCCCCEEEEEEccCCCccccccccccCC-CCCCccccEEEEcccCHHHh--CCCEEEEE
Confidence 57899999999999998 7788999999999975 24668999875 9999999999998643 111 35789999
Q ss_pred EEecC-CCCCceeEEEEEeCccccccCCCCCCeeEEEEe
Q 047341 78 IYASG-YLRDYLIGTVRFLVSNISLSVATKTPSFTAFQI 115 (254)
Q Consensus 78 V~D~d-~~~D~~LG~~~IpL~~l~~~~~~~~~~~~~~~L 115 (254)
|||++ ..++++||++.++|.+..... ...||+|
T Consensus 91 V~d~~~~~~~~~iG~~~i~l~~~~~~~-----~~~W~~L 124 (125)
T cd04031 91 VWDYDRDGENDFLGEVVIDLADALLDD-----EPHWYPL 124 (125)
T ss_pred EEeCCCCCCCcEeeEEEEecccccccC-----CcceEEC
Confidence 99998 456899999999999833221 2467876
No 60
>cd04011 C2B_Ferlin C2 domain second repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme
Probab=99.74 E-value=2.6e-17 Score=128.81 Aligned_cols=106 Identities=20% Similarity=0.247 Sum_probs=84.0
Q ss_pred EEEEEEEeeeCCCCCCCCCCCCCeEEEEEECCcCeEEeEeecCCCCCCeeceEEEEEecCCCccCCCcEEEEEEEecC-C
Q 047341 5 ILEIILISAQGLKSPSSKMRRMQTYALVWIDSSTKLCTRVDRAGAESPIWNEKFLFKVTPEFLSSETSAISVEIYASG-Y 83 (254)
Q Consensus 5 ~L~V~VisA~~L~~~~d~~G~~DPYV~V~l~~~~k~rTkv~k~gt~NP~WNE~f~F~v~~~~l~~~~~~L~veV~D~d-~ 83 (254)
.|+|+|++|++|+ .|.+||||+|+++++ +.+|++.++ +.||+|||+|.|.+...........|.|+|||.+ .
T Consensus 5 ~l~V~v~~a~~L~-----~~~~dpyv~v~~~~~-~~kT~~~~~-t~nP~wne~f~f~~~~~~~~l~~~~l~i~V~d~~~~ 77 (111)
T cd04011 5 QVRVRVIEARQLV-----GGNIDPVVKVEVGGQ-KKYTSVKKG-TNCPFYNEYFFFNFHESPDELFDKIIKISVYDSRSL 77 (111)
T ss_pred EEEEEEEEcccCC-----CCCCCCEEEEEECCE-eeeeeEEec-cCCCccccEEEEecCCCHHHHhcCeEEEEEEcCccc
Confidence 5899999999998 257999999999865 569998864 8999999999999754211112468999999998 5
Q ss_pred CCCceeEEEEEeCccccccCCCCCCeeEEEEeeCC
Q 047341 84 LRDYLIGTVRFLVSNISLSVATKTPSFTAFQIRRP 118 (254)
Q Consensus 84 ~~D~~LG~~~IpL~~l~~~~~~~~~~~~~~~L~~~ 118 (254)
.+|++||++.|+|+++..+.. ......||+|..|
T Consensus 78 ~~~~~iG~~~i~l~~v~~~~~-~~~~~~w~~L~~~ 111 (111)
T cd04011 78 RSDTLIGSFKLDVGTVYDQPD-HAFLRKWLLLTDP 111 (111)
T ss_pred ccCCccEEEEECCccccCCCC-CcceEEEEEeeCc
Confidence 578999999999999976643 2344678888653
No 61
>cd08389 C2A_Synaptotagmin-14_16 C2A domain first repeat present in Synaptotagmins 14 and 16. Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle
Probab=99.74 E-value=2e-17 Score=132.58 Aligned_cols=105 Identities=24% Similarity=0.365 Sum_probs=86.3
Q ss_pred ccEEEEEEEeeeCCCCCCCCCCCCCeEEEEEECCc--CeEEeEeecCCCCCCeeceEEEEE-ecCCCccCCCcEEEEEEE
Q 047341 3 TQILEIILISAQGLKSPSSKMRRMQTYALVWIDSS--TKLCTRVDRAGAESPIWNEKFLFK-VTPEFLSSETSAISVEIY 79 (254)
Q Consensus 3 ~g~L~V~VisA~~L~~~~d~~G~~DPYV~V~l~~~--~k~rTkv~k~gt~NP~WNE~f~F~-v~~~~l~~~~~~L~veV~ 79 (254)
.+.|.|+|++|+||++. +..|..||||++.+.+. .+.+|++.+ + .||+|||+|.|+ ++...+ ....|.|+||
T Consensus 15 ~~~L~V~Vi~a~nL~~~-~~~~~~d~yVk~~llp~~~~~~kTkv~~-~-~nP~fnE~F~f~~i~~~~l--~~~~L~~~V~ 89 (124)
T cd08389 15 ARKLTVTVIRAQDIPTK-DRGGASSWQVHLVLLPSKKQRAKTKVQR-G-PNPVFNETFTFSRVEPEEL--NNMALRFRLY 89 (124)
T ss_pred CCEEEEEEEEecCCCch-hcCCCCCcEEEEEEccCCcceeeccccc-C-CCCcccCEEEECCCCHHHh--ccCEEEEEEE
Confidence 46899999999999998 77888999999888653 567998875 4 999999999998 765333 5788999999
Q ss_pred ecC-CCCCceeEEEEEeCccccccCCCCCCeeEEEEee
Q 047341 80 ASG-YLRDYLIGTVRFLVSNISLSVATKTPSFTAFQIR 116 (254)
Q Consensus 80 D~d-~~~D~~LG~~~IpL~~l~~~~~~~~~~~~~~~L~ 116 (254)
|++ ..++++||++.|+|+++..... ...||.|.
T Consensus 90 ~~~~~~~~~~lG~~~i~L~~l~~~~~----~~~w~~L~ 123 (124)
T cd08389 90 GVERMRKERLIGEKVVPLSQLNLEGE----TTVWLTLE 123 (124)
T ss_pred ECCCcccCceEEEEEEeccccCCCCC----ceEEEeCC
Confidence 998 5679999999999999865432 46778763
No 62
>cd08386 C2A_Synaptotagmin-7 C2A domain first repeat present in Synaptotagmin 7. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves
Probab=99.74 E-value=3.3e-17 Score=130.23 Aligned_cols=106 Identities=22% Similarity=0.368 Sum_probs=85.3
Q ss_pred ccEEEEEEEeeeCCCCCCCCCCCCCeEEEEEECC--cCeEEeEeecCCCCCCeeceEEEEEecC-CCccCCCcEEEEEEE
Q 047341 3 TQILEIILISAQGLKSPSSKMRRMQTYALVWIDS--STKLCTRVDRAGAESPIWNEKFLFKVTP-EFLSSETSAISVEIY 79 (254)
Q Consensus 3 ~g~L~V~VisA~~L~~~~d~~G~~DPYV~V~l~~--~~k~rTkv~k~gt~NP~WNE~f~F~v~~-~~l~~~~~~L~veV~ 79 (254)
.+.|+|+|++|++|+.. +..+.+||||+|.+.+ ..+.+|++.++ +.||+|||+|.|.+.+ +.+ ....|.|+||
T Consensus 15 ~~~L~v~v~~a~~L~~~-d~~~~~dpyv~v~~~~~~~~~~kT~v~~~-t~~P~Wne~f~f~~~~~~~l--~~~~l~~~v~ 90 (125)
T cd08386 15 ESTLTLKILKAVELPAK-DFSGTSDPFVKIYLLPDKKHKLETKVKRK-NLNPHWNETFLFEGFPYEKL--QQRVLYLQVL 90 (125)
T ss_pred CCEEEEEEEEecCCCCc-cCCCCCCceEEEEECCCCCcceeeeeecC-CCCCccceeEEEcccCHHHh--CCCEEEEEEE
Confidence 46899999999999988 7889999999999953 45679999875 8999999999998532 111 3568999999
Q ss_pred ecC-CCCCceeEEEEEeCccccccCCCCCCeeEEEEee
Q 047341 80 ASG-YLRDYLIGTVRFLVSNISLSVATKTPSFTAFQIR 116 (254)
Q Consensus 80 D~d-~~~D~~LG~~~IpL~~l~~~~~~~~~~~~~~~L~ 116 (254)
|++ ..++++||++.|+|.++..+.. ...|+.|.
T Consensus 91 d~d~~~~~~~iG~~~i~l~~l~~~~~----~~~W~~l~ 124 (125)
T cd08386 91 DYDRFSRNDPIGEVSLPLNKVDLTEE----QTFWKDLK 124 (125)
T ss_pred eCCCCcCCcEeeEEEEecccccCCCC----cceEEecC
Confidence 998 5578999999999999875432 34677653
No 63
>KOG1028 consensus Ca2+-dependent phospholipid-binding protein Synaptotagmin, required for synaptic vesicle and secretory granule exocytosis [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.74 E-value=3.2e-17 Score=156.43 Aligned_cols=141 Identities=21% Similarity=0.347 Sum_probs=112.6
Q ss_pred ccEEEEEEEeeeCCCCCCCCCCCCCeEEEEEECCc--CeEEeEeecCCCCCCeeceEEEEEecCCCccCCCcEEEEEEEe
Q 047341 3 TQILEIILISAQGLKSPSSKMRRMQTYALVWIDSS--TKLCTRVDRAGAESPIWNEKFLFKVTPEFLSSETSAISVEIYA 80 (254)
Q Consensus 3 ~g~L~V~VisA~~L~~~~d~~G~~DPYV~V~l~~~--~k~rTkv~k~gt~NP~WNE~f~F~v~~~~l~~~~~~L~veV~D 80 (254)
...|.|+|++|++|+.. +..|.+||||++++.|. .+.+|+|.++ ++||+|||+|.|.|..+.+ ...+|.|.|||
T Consensus 166 ~~~L~V~V~qa~~Lp~~-d~~g~sdpyVK~~llPdk~~k~kT~v~r~-tlnP~fnEtf~f~v~~~~l--~~~~L~l~V~~ 241 (421)
T KOG1028|consen 166 LNLLTVRVIQAHDLPAK-DRGGTSDPYVKVYLLPDKKGKFKTRVHRK-TLNPVFNETFRFEVPYEEL--SNRVLHLSVYD 241 (421)
T ss_pred CCEEEEEEEEecCCCcc-cCCCCCCCeeEEEEcCCCCCcceeeeeec-CcCCccccceEeecCHHHh--ccCEEEEEEEe
Confidence 46799999999999999 66788999999999875 5789999875 9999999999999876433 68999999999
Q ss_pred cC-CCCCceeEEEEEeCccccccCCCCCCeeEEEEeeCC---CCCcceEEEEEEEEEeCCC--------CCCcccccccc
Q 047341 81 SG-YLRDYLIGTVRFLVSNISLSVATKTPSFTAFQIRRP---SGRFQGVLSIGSMLIDGSD--------LPAFDEVSAIG 148 (254)
Q Consensus 81 ~d-~~~D~~LG~~~IpL~~l~~~~~~~~~~~~~~~L~~~---~g~~~G~I~lsl~f~p~~~--------~p~l~~~~~~~ 148 (254)
.| +.++++||++.++|..+..... ...|+.+... .....|+|.++++|.|... +..|..++..+
T Consensus 242 ~drfsr~~~iGev~~~l~~~~~~~~----~~~w~~l~~~~~~~~~~~gel~~sL~Y~p~~g~ltv~v~kar~L~~~~~~~ 317 (421)
T KOG1028|consen 242 FDRFSRHDFIGEVILPLGEVDLLST----TLFWKDLQPSSTDSEELAGELLLSLCYLPTAGRLTVVVIKARNLKSMDVGG 317 (421)
T ss_pred cCCcccccEEEEEEecCcccccccc----ceeeeccccccCCcccccceEEEEEEeecCCCeEEEEEEEecCCCcccCCC
Confidence 99 7889999999999888755442 2456666542 2222389999999999865 44566666666
Q ss_pred ccc
Q 047341 149 YRD 151 (254)
Q Consensus 149 ~~d 151 (254)
..|
T Consensus 318 ~~d 320 (421)
T KOG1028|consen 318 LSD 320 (421)
T ss_pred CCC
Confidence 665
No 64
>cd04052 C2B_Tricalbin-like C2 domain second repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.73 E-value=3.9e-17 Score=128.17 Aligned_cols=104 Identities=21% Similarity=0.312 Sum_probs=85.7
Q ss_pred CCCCCCCeEEEEEECCcCeEEeEeecCCCCCCeeceEEEEEecCCCccCCCcEEEEEEEecCCCCCceeEEEEEeCcccc
Q 047341 21 SKMRRMQTYALVWIDSSTKLCTRVDRAGAESPIWNEKFLFKVTPEFLSSETSAISVEIYASGYLRDYLIGTVRFLVSNIS 100 (254)
Q Consensus 21 d~~G~~DPYV~V~l~~~~k~rTkv~k~gt~NP~WNE~f~F~v~~~~l~~~~~~L~veV~D~d~~~D~~LG~~~IpL~~l~ 100 (254)
..+|.+||||+|.++++...+|+++++ +.||+|||.|.|.+.+. ....|.|+|||.+..+|++||.+.|+|.++.
T Consensus 8 ~~~G~~dPYv~v~v~~~~~~kT~v~~~-t~nP~Wne~f~f~v~~~----~~~~l~i~v~d~~~~~d~~iG~~~v~L~~l~ 82 (111)
T cd04052 8 SKTGLLSPYAELYLNGKLVYTTRVKKK-TNNPSWNASTEFLVTDR----RKSRVTVVVKDDRDRHDPVLGSVSISLNDLI 82 (111)
T ss_pred ccCCCCCceEEEEECCEEEEEEeeecc-CCCCccCCceEEEecCc----CCCEEEEEEEECCCCCCCeEEEEEecHHHHH
Confidence 467899999999998766679998765 89999999999999762 3678999999999449999999999999986
Q ss_pred ccCCCCCCeeEEEEeeCCCCCcceEEEEEEEEEeC
Q 047341 101 LSVATKTPSFTAFQIRRPSGRFQGVLSIGSMLIDG 135 (254)
Q Consensus 101 ~~~~~~~~~~~~~~L~~~~g~~~G~I~lsl~f~p~ 135 (254)
.... ....||+|.. ..+|+|++++.|.|.
T Consensus 83 ~~~~---~~~~w~~L~~---~~~G~i~~~~~~~p~ 111 (111)
T cd04052 83 DATS---VGQQWFPLSG---NGQGRIRISALWKPV 111 (111)
T ss_pred hhhh---ccceeEECCC---CCCCEEEEEEEEecC
Confidence 5432 1247888853 568999999999873
No 65
>PLN03008 Phospholipase D delta
Probab=99.72 E-value=6.7e-17 Score=162.35 Aligned_cols=127 Identities=18% Similarity=0.276 Sum_probs=104.9
Q ss_pred ccEEEEEEEeeeCCCCCCCC------------------------------------------CCCCCeEEEEEECCcCeE
Q 047341 3 TQILEIILISAQGLKSPSSK------------------------------------------MRRMQTYALVWIDSSTKL 40 (254)
Q Consensus 3 ~g~L~V~VisA~~L~~~~d~------------------------------------------~G~~DPYV~V~l~~~~k~ 40 (254)
-|+|+|+|..|++|+++ +. .+++||||+|.+++++..
T Consensus 13 hg~l~~~i~ea~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tSDPYV~I~Lg~~rv~ 91 (868)
T PLN03008 13 HGDLDLKIVKARRLPNM-DMFSEHLRRLFTACNACARPTDTDDVDPRDKGEFGDKNIRSHRKVITSDPYVTVVVPQATLA 91 (868)
T ss_pred ecccEEEEEEcccCCch-hHHHHHHHhhcccccccccccccccccccccccccccccccccccCCCCceEEEEECCccee
Confidence 37899999999999862 11 246799999999766667
Q ss_pred EeEeecCCCCCCeeceEEEEEecCCCccCCCcEEEEEEEecCCCCCceeEEEEEeCccccccCCCCCCeeEEEEeeCCCC
Q 047341 41 CTRVDRAGAESPIWNEKFLFKVTPEFLSSETSAISVEIYASGYLRDYLIGTVRFLVSNISLSVATKTPSFTAFQIRRPSG 120 (254)
Q Consensus 41 rTkv~k~gt~NP~WNE~f~F~v~~~~l~~~~~~L~veV~D~d~~~D~~LG~~~IpL~~l~~~~~~~~~~~~~~~L~~~~g 120 (254)
||+|.++ +.||+|||.|.|.+.. ....|.|+|||.+..++++||++.|||.++..+.. ...|++|....+
T Consensus 92 RTrVi~n-~~NPvWNE~F~f~vah-----~~s~L~f~VkD~D~~gaD~IG~a~IPL~~L~~Ge~----vd~Wl~Ll~~~~ 161 (868)
T PLN03008 92 RTRVLKN-SQEPLWDEKFNISIAH-----PFAYLEFQVKDDDVFGAQIIGTAKIPVRDIASGER----ISGWFPVLGASG 161 (868)
T ss_pred eEEeCCC-CCCCCcceeEEEEecC-----CCceEEEEEEcCCccCCceeEEEEEEHHHcCCCCc----eEEEEEccccCC
Confidence 9999865 8999999999999986 36799999999997788999999999999887653 468899987654
Q ss_pred C---cceEEEEEEEEEeCCCCCC
Q 047341 121 R---FQGVLSIGSMLIDGSDLPA 140 (254)
Q Consensus 121 ~---~~G~I~lsl~f~p~~~~p~ 140 (254)
+ ..|.|+|+|.|.|....|.
T Consensus 162 kp~k~~~kl~v~lqf~pv~~~~~ 184 (868)
T PLN03008 162 KPPKAETAIFIDMKFTPFDQIHS 184 (868)
T ss_pred CCCCCCcEEEEEEEEEEcccccc
Confidence 3 4579999999999876553
No 66
>cd04009 C2B_Munc13-like C2 domain second repeat in Munc13 (mammalian uncoordinated)-like proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, s
Probab=99.72 E-value=4.2e-17 Score=131.86 Aligned_cols=99 Identities=18% Similarity=0.200 Sum_probs=81.7
Q ss_pred ccEEEEEEEeeeCCCCCCCCCCCCCeEEEEEECC------cCeEEeEeecCCCCCCeeceEEEEEecCCCccCCCcEEEE
Q 047341 3 TQILEIILISAQGLKSPSSKMRRMQTYALVWIDS------STKLCTRVDRAGAESPIWNEKFLFKVTPEFLSSETSAISV 76 (254)
Q Consensus 3 ~g~L~V~VisA~~L~~~~d~~G~~DPYV~V~l~~------~~k~rTkv~k~gt~NP~WNE~f~F~v~~~~l~~~~~~L~v 76 (254)
.+.|+|+|++|++|+.. +..|.+||||+|.+.+ ..+.+|+++++ +.||+|||+|.|.+...........|.|
T Consensus 15 ~~~L~V~Vi~A~~L~~~-~~~g~~dPyv~v~l~~~~~~~~~~~~kT~v~~~-t~nP~wnE~f~f~i~~~~~~~~~~~l~~ 92 (133)
T cd04009 15 EQSLRVEILNARNLLPL-DSNGSSDPFVKVELLPRHLFPDVPTPKTQVKKK-TLFPLFDESFEFNVPPEQCSVEGALLLF 92 (133)
T ss_pred CCEEEEEEEEeeCCCCc-CCCCCCCCEEEEEEECCCcCccccccccccCcC-CCCCccCCEEEEEechhhcccCCCEEEE
Confidence 46799999999999998 7789999999999963 24679999875 8999999999999875211113578999
Q ss_pred EEEecCC-CCCceeEEEEEeCccccccC
Q 047341 77 EIYASGY-LRDYLIGTVRFLVSNISLSV 103 (254)
Q Consensus 77 eV~D~d~-~~D~~LG~~~IpL~~l~~~~ 103 (254)
+|||++. .+|++||++.|+|.++..-.
T Consensus 93 ~V~d~d~~~~d~~iG~~~i~l~~l~~~~ 120 (133)
T cd04009 93 TVKDYDLLGSNDFEGEAFLPLNDIPGVE 120 (133)
T ss_pred EEEecCCCCCCcEeEEEEEeHHHCCccc
Confidence 9999994 45999999999999987443
No 67
>cd08390 C2A_Synaptotagmin-15-17 C2A domain first repeat present in Synaptotagmins 15 and 17. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulat
Probab=99.72 E-value=1.1e-16 Score=126.81 Aligned_cols=105 Identities=21% Similarity=0.410 Sum_probs=85.4
Q ss_pred ccEEEEEEEeeeCCCCCCC-CCCCCCeEEEEEECC--cCeEEeEeecCCCCCCeeceEEEEEecCCCccCCCcEEEEEEE
Q 047341 3 TQILEIILISAQGLKSPSS-KMRRMQTYALVWIDS--STKLCTRVDRAGAESPIWNEKFLFKVTPEFLSSETSAISVEIY 79 (254)
Q Consensus 3 ~g~L~V~VisA~~L~~~~d-~~G~~DPYV~V~l~~--~~k~rTkv~k~gt~NP~WNE~f~F~v~~~~l~~~~~~L~veV~ 79 (254)
.+.|.|+|++|++|+.. + ..+..||||+|.+.+ ....+|++.++ +.||+|||.|.|.++...+ ....|.|+||
T Consensus 13 ~~~L~V~v~~a~~L~~~-~~~~~~~dpyV~v~l~~~~~~~~~T~v~~~-~~~P~wne~f~f~i~~~~l--~~~~l~i~v~ 88 (123)
T cd08390 13 EEQLTVSLIKARNLPPR-TKDVAHCDPFVKVCLLPDERRSLQSKVKRK-TQNPNFDETFVFQVSFKEL--QRRTLRLSVY 88 (123)
T ss_pred CCEEEEEEEEecCCCCc-cCCCCCCCcEEEEEEeeCCCCceEeeeEcC-CCCCccceEEEEEcCHHHh--cccEEEEEEE
Confidence 57899999999999988 6 578999999999854 34568988875 9999999999999976321 3468999999
Q ss_pred ecC-CCCCceeEEEEEeCccccccCCCCCCeeEEEEe
Q 047341 80 ASG-YLRDYLIGTVRFLVSNISLSVATKTPSFTAFQI 115 (254)
Q Consensus 80 D~d-~~~D~~LG~~~IpL~~l~~~~~~~~~~~~~~~L 115 (254)
|.+ ..++++||++.|+|.++..... ...|++|
T Consensus 89 d~~~~~~~~~iG~~~i~L~~l~~~~~----~~~w~~L 121 (123)
T cd08390 89 DVDRFSRHCIIGHVLFPLKDLDLVKG----GVVWRDL 121 (123)
T ss_pred ECCcCCCCcEEEEEEEeccceecCCC----ceEEEeC
Confidence 998 4468999999999999876543 2467776
No 68
>cd04018 C2C_Ferlin C2 domain third repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.72 E-value=9.4e-17 Score=133.46 Aligned_cols=107 Identities=21% Similarity=0.150 Sum_probs=85.7
Q ss_pred EEEEEEEeeeCCCCCCCCC--------------CCCCeEEEEEECCcCeEEeEeecCCCCCCeeceEEEEEecCCCccCC
Q 047341 5 ILEIILISAQGLKSPSSKM--------------RRMQTYALVWIDSSTKLCTRVDRAGAESPIWNEKFLFKVTPEFLSSE 70 (254)
Q Consensus 5 ~L~V~VisA~~L~~~~d~~--------------G~~DPYV~V~l~~~~k~rTkv~k~gt~NP~WNE~f~F~v~~~~l~~~ 70 (254)
.|.|+|++|++|+.+ +.. +.+||||+|.+++. +.+|+++++ +.||+|||+|.|++.... .
T Consensus 1 ~~~V~V~~A~dLp~~-d~~~~~~~~~~~~~~~~~~~DPYV~V~~~g~-~~kT~v~~~-t~nPvWNE~f~f~v~~p~---~ 74 (151)
T cd04018 1 RFIFKIYRAEDLPQM-DSGIMANVKKAFLGEKKELVDPYVEVSFAGQ-KVKTSVKKN-SYNPEWNEQIVFPEMFPP---L 74 (151)
T ss_pred CeEEEEEEeCCCCcc-ChhhhccceeccccCCCCCcCcEEEEEECCE-eeecceEcC-CCCCCcceEEEEEeeCCC---c
Confidence 478999999999998 644 36899999999876 569999875 899999999999975322 3
Q ss_pred CcEEEEEEEecC-CCCCceeEEEEEeCccccccCCCCC---CeeEEEEeeC
Q 047341 71 TSAISVEIYASG-YLRDYLIGTVRFLVSNISLSVATKT---PSFTAFQIRR 117 (254)
Q Consensus 71 ~~~L~veV~D~d-~~~D~~LG~~~IpL~~l~~~~~~~~---~~~~~~~L~~ 117 (254)
...|.|+|||++ ..+|++||.+.|+|.++......+. ..+.|+.+..
T Consensus 75 ~~~l~~~v~D~d~~~~dd~iG~~~l~l~~l~~~~~~~~lp~~~p~W~~lyg 125 (151)
T cd04018 75 CERIKIQIRDWDRVGNDDVIGTHFIDLSKISNSGDEGFLPTFGPSFVNLYG 125 (151)
T ss_pred CCEEEEEEEECCCCCCCCEEEEEEEeHHHhccCCccccCCccCceEEEeec
Confidence 579999999999 4589999999999999876553221 2357888764
No 69
>cd04013 C2_SynGAP_like C2 domain present in Ras GTPase activating protein (GAP) family. SynGAP, GAP1, RasGAP, and neurofibromin are all members of the Ras-specific GAP (GTPase-activating protein) family. SynGAP regulates the MAP kinase signaling pathway and is critical for cognition and synapse function. Mutations in this gene causes mental retardation in humans. SynGAP contains a PH-like domain, a C2 domain, and a Ras-GAP domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at leas
Probab=99.72 E-value=2.6e-16 Score=130.16 Aligned_cols=120 Identities=24% Similarity=0.367 Sum_probs=97.3
Q ss_pred cEEEEEEEeeeCCCCCCCCCCCCCeEEEEEECCcCeEEeEeecCCCCCCeeceEEEEEecCCCccCCCcEEEEEEEecC-
Q 047341 4 QILEIILISAQGLKSPSSKMRRMQTYALVWIDSSTKLCTRVDRAGAESPIWNEKFLFKVTPEFLSSETSAISVEIYASG- 82 (254)
Q Consensus 4 g~L~V~VisA~~L~~~~d~~G~~DPYV~V~l~~~~k~rTkv~k~gt~NP~WNE~f~F~v~~~~l~~~~~~L~veV~D~d- 82 (254)
..|.|.|++|++|+.. -+|||.|.+++....||++..+ +.||.|||.|.|.... ....|+|.||+.+
T Consensus 11 ~sL~v~V~EAk~Lp~~------~~~Y~~i~Ld~~~vaRT~v~~~-~~nP~W~E~F~f~~~~-----~~~~l~v~v~k~~~ 78 (146)
T cd04013 11 NSLKLWIIEAKGLPPK------KRYYCELCLDKTLYARTTSKLK-TDTLFWGEHFEFSNLP-----PVSVITVNLYRESD 78 (146)
T ss_pred EEEEEEEEEccCCCCc------CCceEEEEECCEEEEEEEEEcC-CCCCcceeeEEecCCC-----cccEEEEEEEEccC
Confidence 4689999999999876 3899999999887789999865 8999999999998654 3578999998654
Q ss_pred CC----CCceeEEEEEeCccccccCCCCCCeeEEEEeeCCCCC----------cceEEEEEEEEEeCCCCC
Q 047341 83 YL----RDYLIGTVRFLVSNISLSVATKTPSFTAFQIRRPSGR----------FQGVLSIGSMLIDGSDLP 139 (254)
Q Consensus 83 ~~----~D~~LG~~~IpL~~l~~~~~~~~~~~~~~~L~~~~g~----------~~G~I~lsl~f~p~~~~p 139 (254)
.. ++.+||.+.||+.++..+. ....||+|...++. ..+.|+++++|.+....|
T Consensus 79 ~~~~~~~~~~IG~V~Ip~~~l~~~~----~ve~Wfpl~~~~~~~~~~~~~~~~~~~~lrik~rf~~~~~lP 145 (146)
T cd04013 79 KKKKKDKSQLIGTVNIPVTDVSSRQ----FVEKWYPVSTPKGNGKSGGKEGKGESPSIRIKARYQSTRVLP 145 (146)
T ss_pred ccccccCCcEEEEEEEEHHHhcCCC----cccEEEEeecCCCCCccccccccCCCCEEEEEEEEEEeeeCC
Confidence 22 5789999999999988543 34689999875443 347999999999875544
No 70
>cd04032 C2_Perforin C2 domain of Perforin. Perforin contains a single copy of a C2 domain in its C-terminus and plays a role in lymphocyte-mediated cytotoxicity. Mutations in perforin leads to familial hemophagocytic lymphohistiocytosis type 2. The function of perforin is calcium dependent and the C2 domain is thought to confer this binding to target cell membranes. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few
Probab=99.71 E-value=8e-17 Score=130.21 Aligned_cols=92 Identities=21% Similarity=0.292 Sum_probs=77.7
Q ss_pred cccEEEEEEEeeeCCCCCCCCCCCCCeEEEEEECCcCeEEeEeecCCCCCCeeceEEEEEecCCCccCCCcEEEEEEEec
Q 047341 2 ATQILEIILISAQGLKSPSSKMRRMQTYALVWIDSSTKLCTRVDRAGAESPIWNEKFLFKVTPEFLSSETSAISVEIYAS 81 (254)
Q Consensus 2 ~~g~L~V~VisA~~L~~~~d~~G~~DPYV~V~l~~~~k~rTkv~k~gt~NP~WNE~f~F~v~~~~l~~~~~~L~veV~D~ 81 (254)
+.+.|+|+|++|++|+. +..+.+||||+|.+++. +++|+++++ +.||+|||+|.|..... .....|.|+|||+
T Consensus 26 ~~~~L~V~V~~A~~L~~--d~~g~~DPYVkV~~~~~-~~kT~vi~~-t~nPvWNE~F~f~~~~~---~~~~~L~v~V~D~ 98 (127)
T cd04032 26 GLATLTVTVLRATGLWG--DYFTSTDGYVKVFFGGQ-EKRTEVIWN-NNNPRWNATFDFGSVEL---SPGGKLRFEVWDR 98 (127)
T ss_pred CcEEEEEEEEECCCCCc--CcCCCCCeEEEEEECCc-cccCceecC-CCCCcCCCEEEEecccC---CCCCEEEEEEEeC
Confidence 35899999999999984 56789999999999765 779999975 89999999999975321 1478999999999
Q ss_pred C-CCCCceeEEEEEeCcccc
Q 047341 82 G-YLRDYLIGTVRFLVSNIS 100 (254)
Q Consensus 82 d-~~~D~~LG~~~IpL~~l~ 100 (254)
+ ...|++||++.++|....
T Consensus 99 d~~s~dd~IG~~~i~l~~~~ 118 (127)
T cd04032 99 DNGWDDDLLGTCSVVPEAGV 118 (127)
T ss_pred CCCCCCCeeEEEEEEecCCc
Confidence 9 558999999999998654
No 71
>cd04038 C2_ArfGAP C2 domain present in Arf GTPase Activating Proteins (GAP). ArfGAP is a GTPase activating protein which regulates the ADP ribosylation factor Arf, a member of the Ras superfamily of GTP-binding proteins. The GTP-bound form of Arf is involved in Golgi morphology and is involved in recruiting coat proteins. ArfGAP is responsible for the GDP-bound form of Arf which is necessary for uncoating the membrane and allowing the Golgi to fuse with an acceptor compartment. These proteins contain an N-terminal ArfGAP domain containing the characteristic zinc finger motif (Cys-x2-Cys-x(16,17)-x2-Cys) and C-terminal C2 domain. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances i
Probab=99.71 E-value=9.9e-17 Score=132.42 Aligned_cols=91 Identities=16% Similarity=0.373 Sum_probs=80.8
Q ss_pred cEEEEEEEeeeCCCCCCCCCCCCCeEEEEEECCcCeEEeEeecCCCCCCeeceEEEEEecCCCccCCCcEEEEEEEecC-
Q 047341 4 QILEIILISAQGLKSPSSKMRRMQTYALVWIDSSTKLCTRVDRAGAESPIWNEKFLFKVTPEFLSSETSAISVEIYASG- 82 (254)
Q Consensus 4 g~L~V~VisA~~L~~~~d~~G~~DPYV~V~l~~~~k~rTkv~k~gt~NP~WNE~f~F~v~~~~l~~~~~~L~veV~D~d- 82 (254)
|.|+|+|++|++|+.. +. +.+||||+|.++++ +.+|++.++ +.||+|||.|.|.+.. +...|.|+|||++
T Consensus 2 G~L~V~Vi~a~nL~~~-d~-~~sDPYV~v~~g~~-~~kT~vvk~-t~nP~WnE~f~f~i~~-----~~~~l~~~V~D~d~ 72 (145)
T cd04038 2 GLLKVRVVRGTNLAVR-DF-TSSDPYVVLTLGNQ-KVKTRVIKK-NLNPVWNEELTLSVPN-----PMAPLKLEVFDKDT 72 (145)
T ss_pred eEEEEEEEeeECCCCC-CC-CCcCcEEEEEECCE-EEEeeeEcC-CCCCeecccEEEEecC-----CCCEEEEEEEECCC
Confidence 7899999999999987 66 89999999999754 679999875 9999999999999976 4789999999999
Q ss_pred CCCCceeEEEEEeCccccccC
Q 047341 83 YLRDYLIGTVRFLVSNISLSV 103 (254)
Q Consensus 83 ~~~D~~LG~~~IpL~~l~~~~ 103 (254)
+.+|++||++.+++.++....
T Consensus 73 ~~~dd~iG~a~i~l~~l~~~~ 93 (145)
T cd04038 73 FSKDDSMGEAEIDLEPLVEAA 93 (145)
T ss_pred CCCCCEEEEEEEEHHHhhhhh
Confidence 667999999999999987654
No 72
>cd08676 C2A_Munc13-like C2 domain first repeat in Munc13 (mammalian uncoordinated)-like proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, sy
Probab=99.71 E-value=1e-16 Score=133.55 Aligned_cols=101 Identities=21% Similarity=0.369 Sum_probs=83.5
Q ss_pred CcccEEEEEEEeeeCCCCCCCCCCCCCeEEEEEECCc----------------------------CeEEeEeecCCCCCC
Q 047341 1 MATQILEIILISAQGLKSPSSKMRRMQTYALVWIDSS----------------------------TKLCTRVDRAGAESP 52 (254)
Q Consensus 1 M~~g~L~V~VisA~~L~~~~d~~G~~DPYV~V~l~~~----------------------------~k~rTkv~k~gt~NP 52 (254)
++...|+|+|++|++|.+. +..|.+||||+|.+.+. ...+|++.++ +.||
T Consensus 25 ~~~~~L~V~vi~a~~L~~~-d~~g~~DPyv~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kT~v~~~-tlnP 102 (153)
T cd08676 25 PPIFVLKVTVIEAKGLLAK-DVNGFSDPYCMLGIVPASRERNSEKSKKRKSHRKKAVLKDTVPAKSIKVTEVKPQ-TLNP 102 (153)
T ss_pred CCeEEEEEEEEeccCCccc-CCCCCCCceEEEEEcccccccccccccccccccccccccccccccccEecceecC-CCCC
Confidence 3568899999999999998 88899999999999642 2368888865 9999
Q ss_pred eeceEEEEEecCCCccCCCcEEEEEEEecCCCCCceeEEEEEeCccccccCCCCCCeeEEEEe
Q 047341 53 IWNEKFLFKVTPEFLSSETSAISVEIYASGYLRDYLIGTVRFLVSNISLSVATKTPSFTAFQI 115 (254)
Q Consensus 53 ~WNE~f~F~v~~~~l~~~~~~L~veV~D~d~~~D~~LG~~~IpL~~l~~~~~~~~~~~~~~~L 115 (254)
+|||+|.|.+... ....|.|+|||++ |++||++.|++.++.... ...||+|
T Consensus 103 ~WnE~F~f~v~~~----~~~~L~i~V~D~d---d~~IG~v~i~l~~l~~~~-----~d~W~~L 153 (153)
T cd08676 103 VWNETFRFEVEDV----SNDQLHLDIWDHD---DDFLGCVNIPLKDLPSCG-----LDSWFKL 153 (153)
T ss_pred ccccEEEEEeccC----CCCEEEEEEEecC---CCeEEEEEEEHHHhCCCC-----CCCeEeC
Confidence 9999999999652 4689999999987 899999999999987322 2456654
No 73
>cd08383 C2A_RasGAP C2 domain (first repeat) of Ras GTPase activating proteins (GAPs). RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain either a single C2 domain or two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2
Probab=99.71 E-value=2.8e-16 Score=123.05 Aligned_cols=113 Identities=21% Similarity=0.300 Sum_probs=84.5
Q ss_pred EEEEEEeeeCCCCCCCCCCCCCeEEEEEECCcCeEEeEeecCCCCCCeeceEEEEEecCCCccCCCcEEEEEEEecCCC-
Q 047341 6 LEIILISAQGLKSPSSKMRRMQTYALVWIDSSTKLCTRVDRAGAESPIWNEKFLFKVTPEFLSSETSAISVEIYASGYL- 84 (254)
Q Consensus 6 L~V~VisA~~L~~~~d~~G~~DPYV~V~l~~~~k~rTkv~k~gt~NP~WNE~f~F~v~~~~l~~~~~~L~veV~D~d~~- 84 (254)
|+|+|++|++|+.. |.+||||+|.+++...++|++.++ .||.|||+|.|.+....+ ....|.|.|||.+..
T Consensus 2 L~v~vi~a~~l~~~----~~~dpyv~v~~~~~~~~kT~~~~~--~~P~Wne~f~f~v~~~~~--~~~~l~i~v~d~~~~~ 73 (117)
T cd08383 2 LRLRILEAKNLPSK----GTRDPYCTVSLDQVEVARTKTVEK--LNPFWGEEFVFDDPPPDV--TFFTLSFYNKDKRSKD 73 (117)
T ss_pred eEEEEEEecCCCcC----CCCCceEEEEECCEEeEecceEEC--CCCcccceEEEecCCccc--cEEEEEEEEEecccCC
Confidence 78999999999864 789999999998765679998864 999999999999976321 246778888887733
Q ss_pred CCceeEEEEEeCccccccCCCCCCeeEEEEeeCC--CCCcceEEEEEEEE
Q 047341 85 RDYLIGTVRFLVSNISLSVATKTPSFTAFQIRRP--SGRFQGVLSIGSML 132 (254)
Q Consensus 85 ~D~~LG~~~IpL~~l~~~~~~~~~~~~~~~L~~~--~g~~~G~I~lsl~f 132 (254)
.+.++|. ++|..+..+. ....||+|... .+...|+|+|.++|
T Consensus 74 ~~~~~g~--v~l~~~~~~~----~~~~w~~L~~~~~~~~~~G~l~l~~~~ 117 (117)
T cd08383 74 RDIVIGK--VALSKLDLGQ----GKDEWFPLTPVDPDSEVQGSVRLRARY 117 (117)
T ss_pred CeeEEEE--EEecCcCCCC----cceeEEECccCCCCCCcCceEEEEEEC
Confidence 4555555 5555554432 23578888643 34669999999987
No 74
>cd08406 C2B_Synaptotagmin-12 C2 domain second repeat present in Synaptotagmin 12. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 12, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 13, do not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycl
Probab=99.70 E-value=6.5e-17 Score=132.07 Aligned_cols=92 Identities=21% Similarity=0.291 Sum_probs=78.5
Q ss_pred ccEEEEEEEeeeCCCCCCCCCCCCCeEEEEEECCc----CeEEeEeecCCCCCCeeceEEEEEecCCCccCCCcEEEEEE
Q 047341 3 TQILEIILISAQGLKSPSSKMRRMQTYALVWIDSS----TKLCTRVDRAGAESPIWNEKFLFKVTPEFLSSETSAISVEI 78 (254)
Q Consensus 3 ~g~L~V~VisA~~L~~~~d~~G~~DPYV~V~l~~~----~k~rTkv~k~gt~NP~WNE~f~F~v~~~~l~~~~~~L~veV 78 (254)
...|.|+|++|++|+.. +..|.+||||+|.+.+. .+.+|++.++ +.||+|||+|.|.|+...+ ....|.|.|
T Consensus 14 ~~~L~V~Vi~A~nL~~~-~~~g~~DpyVkv~l~~~~~~~~k~kT~v~k~-t~nP~~nE~f~F~v~~~~l--~~~~l~~~V 89 (136)
T cd08406 14 AERLTVVVVKARNLVWD-NGKTTADPFVKVYLLQDGRKISKKKTSVKRD-DTNPIFNEAMIFSVPAIVL--QDLSLRVTV 89 (136)
T ss_pred CCEEEEEEEEeeCCCCc-cCCCCCCeEEEEEEEeCCccccccCCccccC-CCCCeeceeEEEECCHHHh--CCcEEEEEE
Confidence 46799999999999988 78899999999999653 2558888875 8999999999999986433 678999999
Q ss_pred EecC-CCCCceeEEEEEeCcc
Q 047341 79 YASG-YLRDYLIGTVRFLVSN 98 (254)
Q Consensus 79 ~D~d-~~~D~~LG~~~IpL~~ 98 (254)
||++ ..++++||++.|+...
T Consensus 90 ~~~d~~~~~~~iG~v~lg~~~ 110 (136)
T cd08406 90 AESTEDGKTPNVGHVIIGPAA 110 (136)
T ss_pred EeCCCCCCCCeeEEEEECCCC
Confidence 9998 6789999999997653
No 75
>cd08407 C2B_Synaptotagmin-13 C2 domain second repeat present in Synaptotagmin 13. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recy
Probab=99.70 E-value=8.5e-17 Score=131.83 Aligned_cols=92 Identities=20% Similarity=0.348 Sum_probs=77.9
Q ss_pred ccEEEEEEEeeeCCCCCCC--CCCCCCeEEEEEECCc----CeEEeEeecCCCCCCeeceEEEEEecCCCccCCCcEEEE
Q 047341 3 TQILEIILISAQGLKSPSS--KMRRMQTYALVWIDSS----TKLCTRVDRAGAESPIWNEKFLFKVTPEFLSSETSAISV 76 (254)
Q Consensus 3 ~g~L~V~VisA~~L~~~~d--~~G~~DPYV~V~l~~~----~k~rTkv~k~gt~NP~WNE~f~F~v~~~~l~~~~~~L~v 76 (254)
.+.|.|+|++|+||... + ..+.+||||+|.+.+. .+.||++.++ +.||+|||.|.|.++.+.+ ....|.|
T Consensus 14 ~~~L~V~V~karnL~~~-d~~~~~~~DpYVKv~l~~~~~k~~kkkT~v~k~-t~nPvfNE~f~F~v~~~~L--~~~~L~~ 89 (138)
T cd08407 14 ANRLLVVVIKAKNLHSD-QLKLLLGIDVSVKVTLKHQNAKLKKKQTKRAKH-KINPVWNEMIMFELPSELL--AASSVEL 89 (138)
T ss_pred CCeEEEEEEEecCCCcc-ccCCCCCCCeEEEEEEEcCCcccceeccceeeC-CCCCccccEEEEECCHHHh--CccEEEE
Confidence 57899999999999988 5 2355899999999763 3568998875 9999999999999987543 5788999
Q ss_pred EEEecC-CCCCceeEEEEEeCcc
Q 047341 77 EIYASG-YLRDYLIGTVRFLVSN 98 (254)
Q Consensus 77 eV~D~d-~~~D~~LG~~~IpL~~ 98 (254)
+|||++ +.++++||++.+++..
T Consensus 90 ~V~d~d~~~~~d~iG~v~lg~~~ 112 (138)
T cd08407 90 EVLNQDSPGQSLPLGRCSLGLHT 112 (138)
T ss_pred EEEeCCCCcCcceeceEEecCcC
Confidence 999999 6679999999999864
No 76
>cd04037 C2E_Ferlin C2 domain fifth repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.70 E-value=1.2e-16 Score=127.91 Aligned_cols=119 Identities=13% Similarity=0.135 Sum_probs=89.5
Q ss_pred EEEEEEEeeeCCCCCCCCCCCCCeEEEEEECCcC-eEEeEeecCCCCCCeeceEEEEEecCCCccCCCcEEEEEEEecC-
Q 047341 5 ILEIILISAQGLKSPSSKMRRMQTYALVWIDSST-KLCTRVDRAGAESPIWNEKFLFKVTPEFLSSETSAISVEIYASG- 82 (254)
Q Consensus 5 ~L~V~VisA~~L~~~~d~~G~~DPYV~V~l~~~~-k~rTkv~k~gt~NP~WNE~f~F~v~~~~l~~~~~~L~veV~D~d- 82 (254)
+|+|.|++|++|++. +..|.+||||+|.+++.. ..+|.+.++ +.||+|||+|.|.+... ....|.|+|||++
T Consensus 1 ~lrV~Vi~a~~L~~~-d~~g~~DPYv~v~~~~~~~~~kT~~v~~-t~nP~Wne~f~f~~~~~----~~~~L~~~V~d~d~ 74 (124)
T cd04037 1 LVRVYVVRARNLQPK-DPNGKSDPYLKIKLGKKKINDRDNYIPN-TLNPVFGKMFELEATLP----GNSILKISVMDYDL 74 (124)
T ss_pred CEEEEEEECcCCCCC-CCCCCCCcEEEEEECCeeccceeeEEEC-CCCCccceEEEEEecCC----CCCEEEEEEEECCC
Confidence 489999999999998 788999999999997653 357777765 99999999999998642 4679999999999
Q ss_pred CCCCceeEEEEEeCccccccCCCCCCeeEEEEeeCCCCCcceEEEEEEEEEeC
Q 047341 83 YLRDYLIGTVRFLVSNISLSVATKTPSFTAFQIRRPSGRFQGVLSIGSMLIDG 135 (254)
Q Consensus 83 ~~~D~~LG~~~IpL~~l~~~~~~~~~~~~~~~L~~~~g~~~G~I~lsl~f~p~ 135 (254)
..+|++||++.|+|.+..-... +.++- ..++-...|.++...++.|.
T Consensus 75 ~~~dd~iG~~~i~l~~~~~~~~-----~~~~~-~~~~~~~~~~~~~~~~~~~~ 121 (124)
T cd04037 75 LGSDDLIGETVIDLEDRFFSKH-----RATCG-LPPTYEESGPNQWRDSLKPS 121 (124)
T ss_pred CCCCceeEEEEEeecccccchH-----HHhcc-CCCcccccCceecCcccCcc
Confidence 4579999999999988653210 11111 11222356777777776654
No 77
>cd08384 C2B_Rabphilin_Doc2 C2 domain second repeat present in Rabphilin and Double C2 domain. Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domai
Probab=99.69 E-value=1.5e-16 Score=128.10 Aligned_cols=92 Identities=14% Similarity=0.278 Sum_probs=78.6
Q ss_pred ccEEEEEEEeeeCCCCCCCCCCCCCeEEEEEECCc----CeEEeEeecCCCCCCeeceEEEEEecCCCccCCCcEEEEEE
Q 047341 3 TQILEIILISAQGLKSPSSKMRRMQTYALVWIDSS----TKLCTRVDRAGAESPIWNEKFLFKVTPEFLSSETSAISVEI 78 (254)
Q Consensus 3 ~g~L~V~VisA~~L~~~~d~~G~~DPYV~V~l~~~----~k~rTkv~k~gt~NP~WNE~f~F~v~~~~l~~~~~~L~veV 78 (254)
.+.|.|+|++|++|++. +..|..||||+|.+.+. .+.+|++.++ +.||+|||+|.|.+....+ ....|.|+|
T Consensus 12 ~~~L~V~Vi~a~~L~~~-d~~~~~DpyV~v~l~~~~~~~~~~kT~v~~~-t~nP~wne~f~f~~~~~~l--~~~~l~~~V 87 (133)
T cd08384 12 RRGLIVGIIRCVNLAAM-DANGYSDPFVKLYLKPDAGKKSKHKTQVKKK-TLNPEFNEEFFYDIKHSDL--AKKTLEITV 87 (133)
T ss_pred CCEEEEEEEEEcCCCCc-CCCCCCCcEEEEEEEcCCCccCCceeeeEec-cCCCCcccEEEEECCHHHh--CCCEEEEEE
Confidence 57899999999999998 78899999999999642 3579999875 9999999999999875322 357899999
Q ss_pred EecC-CCCCceeEEEEEeCcc
Q 047341 79 YASG-YLRDYLIGTVRFLVSN 98 (254)
Q Consensus 79 ~D~d-~~~D~~LG~~~IpL~~ 98 (254)
||++ ...|++||++.|++..
T Consensus 88 ~d~d~~~~~~~lG~~~i~l~~ 108 (133)
T cd08384 88 WDKDIGKSNDYIGGLQLGINA 108 (133)
T ss_pred EeCCCCCCccEEEEEEEecCC
Confidence 9998 4568999999999975
No 78
>cd04020 C2B_SLP_1-2-3-4 C2 domain second repeat present in Synaptotagmin-like proteins 1-4. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involvin
Probab=99.69 E-value=2.4e-16 Score=132.23 Aligned_cols=97 Identities=18% Similarity=0.316 Sum_probs=80.4
Q ss_pred cccEEEEEEEeeeCCCCCCCCCCCCCeEEEEEECC----cCeEEeEeecCCCCCCeeceEEEEEec-CCCccCCCcEEEE
Q 047341 2 ATQILEIILISAQGLKSPSSKMRRMQTYALVWIDS----STKLCTRVDRAGAESPIWNEKFLFKVT-PEFLSSETSAISV 76 (254)
Q Consensus 2 ~~g~L~V~VisA~~L~~~~d~~G~~DPYV~V~l~~----~~k~rTkv~k~gt~NP~WNE~f~F~v~-~~~l~~~~~~L~v 76 (254)
..+.|.|+|++|++|+.. +..+.+||||+|.+.+ ..++||+++++ +.||+|||+|.|.+. .+.+ ....|.|
T Consensus 25 ~~g~L~V~Vi~A~nL~~~-d~~g~~DPYVkv~l~~~~~~~~~~kT~vi~~-t~nP~WnE~f~f~~~~~~~l--~~~~L~i 100 (162)
T cd04020 25 STGELHVWVKEAKNLPAL-KSGGTSDSFVKCYLLPDKSKKSKQKTPVVKK-SVNPVWNHTFVYDGVSPEDL--SQACLEL 100 (162)
T ss_pred CCceEEEEEEeeeCCCCC-CCCCCCCCEEEEEEEcCCCCCcceeCCccCC-CCCCCCCCEEEEecCCHHHh--CCCEEEE
Confidence 357899999999999998 7789999999999853 35679999876 899999999999853 2111 3568999
Q ss_pred EEEecC-CCCCceeEEEEEeCcccccc
Q 047341 77 EIYASG-YLRDYLIGTVRFLVSNISLS 102 (254)
Q Consensus 77 eV~D~d-~~~D~~LG~~~IpL~~l~~~ 102 (254)
+|||++ ..+|++||++.|++.++...
T Consensus 101 ~V~d~d~~~~d~~lG~v~i~l~~~~~~ 127 (162)
T cd04020 101 TVWDHDKLSSNDFLGGVRLGLGTGKSY 127 (162)
T ss_pred EEEeCCCCCCCceEEEEEEeCCccccC
Confidence 999998 45699999999999997644
No 79
>cd08408 C2B_Synaptotagmin-14_16 C2 domain second repeat present in Synaptotagmins 14 and 16. Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle
Probab=99.68 E-value=2.7e-16 Score=128.58 Aligned_cols=93 Identities=22% Similarity=0.292 Sum_probs=79.5
Q ss_pred ccEEEEEEEeeeCCCCCCCCCCCCCeEEEEEECCc-----CeEEeEeecCCCCCCeeceEEEEEecCCCccCCCcEEEEE
Q 047341 3 TQILEIILISAQGLKSPSSKMRRMQTYALVWIDSS-----TKLCTRVDRAGAESPIWNEKFLFKVTPEFLSSETSAISVE 77 (254)
Q Consensus 3 ~g~L~V~VisA~~L~~~~d~~G~~DPYV~V~l~~~-----~k~rTkv~k~gt~NP~WNE~f~F~v~~~~l~~~~~~L~ve 77 (254)
.+.|.|+|++|+||+.. +..|..||||+|.+.+. .+.+|++.++ +.||+|||+|.|.++.+.+ ....|.|.
T Consensus 14 ~~~L~V~VikarnL~~~-~~~~~~dpyVkv~llp~~~~~~~~~kT~v~~~-t~nPvfnEtF~f~i~~~~l--~~~~L~~~ 89 (138)
T cd08408 14 TGRLSVEVIKGSNFKNL-AMNKAPDTYVKLTLLNSDGQEISKSKTSIRRG-QPDPEFKETFVFQVALFQL--SEVTLMFS 89 (138)
T ss_pred CCeEEEEEEEecCCCcc-ccCCCCCeeEEEEEEeCCCcceeeccceeecC-CCCCcEeeeEEEECCHHHh--CccEEEEE
Confidence 57899999999999998 78899999999999652 2568999875 8999999999999986433 57799999
Q ss_pred EEecC-CCCCceeEEEEEeCccc
Q 047341 78 IYASG-YLRDYLIGTVRFLVSNI 99 (254)
Q Consensus 78 V~D~d-~~~D~~LG~~~IpL~~l 99 (254)
|||.+ ..++++||++.|++...
T Consensus 90 V~~~~~~~~~~~iG~v~l~~~~~ 112 (138)
T cd08408 90 VYNKRKMKRKEMIGWFSLGLNSS 112 (138)
T ss_pred EEECCCCCCCcEEEEEEECCcCC
Confidence 99998 66899999999988643
No 80
>cd08409 C2B_Synaptotagmin-15 C2 domain second repeat present in Synaptotagmin 15. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 id
Probab=99.67 E-value=4.8e-16 Score=126.65 Aligned_cols=92 Identities=29% Similarity=0.390 Sum_probs=77.7
Q ss_pred ccEEEEEEEeeeCCCCCCCCCCCCCeEEEEEECCc----CeEEeEeecCCCCCCeeceEEEEEecCCCccCCCcEEEEEE
Q 047341 3 TQILEIILISAQGLKSPSSKMRRMQTYALVWIDSS----TKLCTRVDRAGAESPIWNEKFLFKVTPEFLSSETSAISVEI 78 (254)
Q Consensus 3 ~g~L~V~VisA~~L~~~~d~~G~~DPYV~V~l~~~----~k~rTkv~k~gt~NP~WNE~f~F~v~~~~l~~~~~~L~veV 78 (254)
.+.|.|+|++|+||... + .+.+||||+|.+.+. .+.+|++.+ ++.||+|||.|.|.++.+.+ ....|.|+|
T Consensus 14 ~~~L~V~V~~a~nL~~~-~-~~~~d~yVkv~l~~~~~~~~~~kT~v~~-~~~nP~fnE~F~f~i~~~~l--~~~~L~~~V 88 (137)
T cd08409 14 LNRLTVVVLRARGLRQL-D-HAHTSVYVKVSLMIHNKVVKTKKTEVVD-GAASPSFNESFSFKVTSRQL--DTASLSLSV 88 (137)
T ss_pred CCeEEEEEEEecCCCcc-c-CCCCCeEEEEEEEECCEEeeeeecccEe-CCCCCcccceEEEECCHHHh--CccEEEEEE
Confidence 46799999999999988 6 788999999999753 356898876 49999999999999986443 458999999
Q ss_pred EecC-CCCCceeEEEEEeCccc
Q 047341 79 YASG-YLRDYLIGTVRFLVSNI 99 (254)
Q Consensus 79 ~D~d-~~~D~~LG~~~IpL~~l 99 (254)
||.+ ..++++||++.|+....
T Consensus 89 ~~~~~~~~~~~lG~v~ig~~~~ 110 (137)
T cd08409 89 MQSGGVRKSKLLGRVVLGPFMY 110 (137)
T ss_pred EeCCCCCCcceEEEEEECCccc
Confidence 9998 66799999999986544
No 81
>cd08404 C2B_Synaptotagmin-4 C2 domain second repeat present in Synaptotagmin 4. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling s
Probab=99.67 E-value=3.4e-16 Score=126.80 Aligned_cols=92 Identities=22% Similarity=0.320 Sum_probs=78.1
Q ss_pred ccEEEEEEEeeeCCCCCCCCCCCCCeEEEEEECCc----CeEEeEeecCCCCCCeeceEEEEEecCCCccCCCcEEEEEE
Q 047341 3 TQILEIILISAQGLKSPSSKMRRMQTYALVWIDSS----TKLCTRVDRAGAESPIWNEKFLFKVTPEFLSSETSAISVEI 78 (254)
Q Consensus 3 ~g~L~V~VisA~~L~~~~d~~G~~DPYV~V~l~~~----~k~rTkv~k~gt~NP~WNE~f~F~v~~~~l~~~~~~L~veV 78 (254)
.+.|.|+|++|++|+.. +..|.+||||+|.+.+. .+.+|++.++ +.||+|||+|.|.+....+ ....|.|+|
T Consensus 14 ~~~L~V~vi~a~~L~~~-d~~g~~Dpyv~v~l~~~~~~~~~~kT~v~k~-t~nP~w~e~F~f~v~~~~~--~~~~l~~~v 89 (136)
T cd08404 14 TNRLTVVVLKARHLPKM-DVSGLADPYVKVNLYYGKKRISKKKTHVKKC-TLNPVFNESFVFDIPSEEL--EDISVEFLV 89 (136)
T ss_pred CCeEEEEEEEeeCCCcc-ccCCCCCeEEEEEEEcCCceeeeEcCccccC-CCCCccCceEEEECCHHHh--CCCEEEEEE
Confidence 46899999999999998 78899999999999642 2568888865 9999999999999975322 467899999
Q ss_pred EecC-CCCCceeEEEEEeCcc
Q 047341 79 YASG-YLRDYLIGTVRFLVSN 98 (254)
Q Consensus 79 ~D~d-~~~D~~LG~~~IpL~~ 98 (254)
||++ ..++++||++.|++..
T Consensus 90 ~d~d~~~~~~~iG~~~~~~~~ 110 (136)
T cd08404 90 LDSDRVTKNEVIGRLVLGPKA 110 (136)
T ss_pred EECCCCCCCccEEEEEECCcC
Confidence 9998 5578999999999987
No 82
>cd08402 C2B_Synaptotagmin-1 C2 domain second repeat present in Synaptotagmin 1. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of the class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis. It, like synaptotagmin-2, has an N-glycosylated N-terminus. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are:
Probab=99.67 E-value=3.6e-16 Score=126.51 Aligned_cols=92 Identities=20% Similarity=0.269 Sum_probs=77.0
Q ss_pred ccEEEEEEEeeeCCCCCCCCCCCCCeEEEEEECCc----CeEEeEeecCCCCCCeeceEEEEEecCCCccCCCcEEEEEE
Q 047341 3 TQILEIILISAQGLKSPSSKMRRMQTYALVWIDSS----TKLCTRVDRAGAESPIWNEKFLFKVTPEFLSSETSAISVEI 78 (254)
Q Consensus 3 ~g~L~V~VisA~~L~~~~d~~G~~DPYV~V~l~~~----~k~rTkv~k~gt~NP~WNE~f~F~v~~~~l~~~~~~L~veV 78 (254)
.+.|+|+|++|++|+.. +..|.+||||+|.+.+. .+.+|++.++ +.||+|||+|.|.+....+ ....|.|+|
T Consensus 14 ~~~l~V~Vi~a~~L~~~-d~~g~~dpyv~v~l~~~~~~~~~~kT~v~~~-t~nP~wne~f~f~i~~~~l--~~~~l~~~v 89 (136)
T cd08402 14 AGKLTVVILEAKNLKKM-DVGGLSDPYVKIHLMQNGKRLKKKKTTIKKR-TLNPYYNESFSFEVPFEQI--QKVHLIVTV 89 (136)
T ss_pred CCeEEEEEEEeeCCCcc-cCCCCCCCeEEEEEEECCcccceeeccceeC-CCCCcccceEEEECCHHHh--CCCEEEEEE
Confidence 47899999999999988 78899999999999532 3568888764 9999999999999875322 345899999
Q ss_pred EecC-CCCCceeEEEEEeCcc
Q 047341 79 YASG-YLRDYLIGTVRFLVSN 98 (254)
Q Consensus 79 ~D~d-~~~D~~LG~~~IpL~~ 98 (254)
||++ ..+|++||++.|++..
T Consensus 90 ~d~~~~~~~~~iG~~~i~~~~ 110 (136)
T cd08402 90 LDYDRIGKNDPIGKVVLGCNA 110 (136)
T ss_pred EeCCCCCCCceeEEEEECCcc
Confidence 9998 5578999999999975
No 83
>cd08405 C2B_Synaptotagmin-7 C2 domain second repeat present in Synaptotagmin 7. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves
Probab=99.67 E-value=3.2e-16 Score=126.82 Aligned_cols=93 Identities=22% Similarity=0.361 Sum_probs=78.0
Q ss_pred ccEEEEEEEeeeCCCCCCCCCCCCCeEEEEEECC----cCeEEeEeecCCCCCCeeceEEEEEecCCCccCCCcEEEEEE
Q 047341 3 TQILEIILISAQGLKSPSSKMRRMQTYALVWIDS----STKLCTRVDRAGAESPIWNEKFLFKVTPEFLSSETSAISVEI 78 (254)
Q Consensus 3 ~g~L~V~VisA~~L~~~~d~~G~~DPYV~V~l~~----~~k~rTkv~k~gt~NP~WNE~f~F~v~~~~l~~~~~~L~veV 78 (254)
.+.|.|+|++|++|+.. +..|..||||+|.+.+ ..+.+|++.++ +.||+|||+|.|.++.+.+ ....|.|+|
T Consensus 14 ~~~L~v~vi~a~~L~~~-~~~g~~dpyV~v~l~~~~~~~~~~kT~v~~~-t~~P~wne~F~f~i~~~~~--~~~~l~~~v 89 (136)
T cd08405 14 ANRITVNIIKARNLKAM-DINGTSDPYVKVWLMYKDKRVEKKKTVIKKR-TLNPVFNESFIFNIPLERL--RETTLIITV 89 (136)
T ss_pred CCeEEEEEEEeeCCCcc-ccCCCCCceEEEEEEeCCCccccccCcceeC-CCCCcccceEEEeCCHHHh--CCCEEEEEE
Confidence 47899999999999988 7889999999999843 13568988875 8999999999999874321 356899999
Q ss_pred EecC-CCCCceeEEEEEeCccc
Q 047341 79 YASG-YLRDYLIGTVRFLVSNI 99 (254)
Q Consensus 79 ~D~d-~~~D~~LG~~~IpL~~l 99 (254)
||.+ ..+|++||++.|++.+.
T Consensus 90 ~d~~~~~~~~~lG~~~i~~~~~ 111 (136)
T cd08405 90 MDKDRLSRNDLIGKIYLGWKSG 111 (136)
T ss_pred EECCCCCCCcEeEEEEECCccC
Confidence 9998 55789999999999875
No 84
>cd04026 C2_PKC_alpha_gamma C2 domain in Protein Kinase C (PKC) alpha and gamma. A single C2 domain is found in PKC alpha and gamma. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1(alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transd
Probab=99.67 E-value=7.3e-16 Score=123.71 Aligned_cols=105 Identities=20% Similarity=0.292 Sum_probs=87.5
Q ss_pred cEEEEEEEeeeCCCCCCCCCCCCCeEEEEEECC----cCeEEeEeecCCCCCCeeceEEEEEecCCCccCCCcEEEEEEE
Q 047341 4 QILEIILISAQGLKSPSSKMRRMQTYALVWIDS----STKLCTRVDRAGAESPIWNEKFLFKVTPEFLSSETSAISVEIY 79 (254)
Q Consensus 4 g~L~V~VisA~~L~~~~d~~G~~DPYV~V~l~~----~~k~rTkv~k~gt~NP~WNE~f~F~v~~~~l~~~~~~L~veV~ 79 (254)
+.|+|+|++|++|+.. +..+..||||+|.+.+ ..+.+|++.++ +.||.|||+|.|.+.... ....|.|+||
T Consensus 13 ~~l~v~i~~a~nL~~~-~~~~~~dpyv~v~~~~~~~~~~~~rT~v~~~-~~~P~wne~f~~~~~~~~---~~~~l~v~v~ 87 (131)
T cd04026 13 NKLTVEVREAKNLIPM-DPNGLSDPYVKLKLIPDPKNETKQKTKTIKK-TLNPVWNETFTFDLKPAD---KDRRLSIEVW 87 (131)
T ss_pred CEEEEEEEEeeCCCCc-CCCCCCCCcEEEEEEcCCCCCceecceeecC-CCCCCccceEEEeCCchh---cCCEEEEEEE
Confidence 6799999999999987 6778999999999964 25679999875 899999999999987521 3578999999
Q ss_pred ecC-CCCCceeEEEEEeCccccccCCCCCCeeEEEEeeCC
Q 047341 80 ASG-YLRDYLIGTVRFLVSNISLSVATKTPSFTAFQIRRP 118 (254)
Q Consensus 80 D~d-~~~D~~LG~~~IpL~~l~~~~~~~~~~~~~~~L~~~ 118 (254)
|.+ ...+++||++.++|.++.... ...||+|.+.
T Consensus 88 d~~~~~~~~~iG~~~~~l~~l~~~~-----~~~w~~L~~~ 122 (131)
T cd04026 88 DWDRTTRNDFMGSLSFGVSELIKMP-----VDGWYKLLNQ 122 (131)
T ss_pred ECCCCCCcceeEEEEEeHHHhCcCc-----cCceEECcCc
Confidence 998 457899999999999987542 3578998764
No 85
>cd08403 C2B_Synaptotagmin-3-5-6-9-10 C2 domain second repeat present in Synaptotagmins 3, 5, 6, 9, and 10. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 3, a member of class 3 synaptotagmins, is located in the brain and localized to the active zone and plasma membrane. It functions as a Ca2+ sensor for fast exocytosis. It, along with synaptotagmins 5,6, and 10, has disulfide bonds at its N-terminus. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and localized to the synaptic vesicles. It is thought to be a Ca2+-sensor for dense-core vesicle exocytosis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind
Probab=99.67 E-value=3.9e-16 Score=126.05 Aligned_cols=92 Identities=23% Similarity=0.309 Sum_probs=76.8
Q ss_pred cccEEEEEEEeeeCCCCCCCCCCCCCeEEEEEECC--c--CeEEeEeecCCCCCCeeceEEEEEecCCCccCCCcEEEEE
Q 047341 2 ATQILEIILISAQGLKSPSSKMRRMQTYALVWIDS--S--TKLCTRVDRAGAESPIWNEKFLFKVTPEFLSSETSAISVE 77 (254)
Q Consensus 2 ~~g~L~V~VisA~~L~~~~d~~G~~DPYV~V~l~~--~--~k~rTkv~k~gt~NP~WNE~f~F~v~~~~l~~~~~~L~ve 77 (254)
..+.|+|+|++|++|++. +..|.+||||+|.+.+ . .+.+|++.+ ++.||+|||+|.|.+..+.+ ....|.|+
T Consensus 12 ~~~~L~V~v~~A~~L~~~-d~~g~~dpyvkv~l~~~~~~~~~~kT~v~~-~t~nP~wne~f~f~i~~~~~--~~~~l~~~ 87 (134)
T cd08403 12 TAGRLTLTIIKARNLKAM-DITGFSDPYVKVSLMCEGRRLKKKKTSVKK-NTLNPTYNEALVFDVPPENV--DNVSLIIA 87 (134)
T ss_pred CCCEEEEEEEEeeCCCcc-ccCCCCCceEEEEEEeCCcccceecCCccc-CCCCCcccceEEEECCHHHh--CCCEEEEE
Confidence 467899999999999998 7889999999999853 1 356888875 49999999999999875322 34579999
Q ss_pred EEecC-CCCCceeEEEEEeCc
Q 047341 78 IYASG-YLRDYLIGTVRFLVS 97 (254)
Q Consensus 78 V~D~d-~~~D~~LG~~~IpL~ 97 (254)
|||++ ..++++||++.|++.
T Consensus 88 v~d~~~~~~~~~IG~~~l~~~ 108 (134)
T cd08403 88 VVDYDRVGHNELIGVCRVGPN 108 (134)
T ss_pred EEECCCCCCCceeEEEEECCC
Confidence 99998 456999999999986
No 86
>cd04048 C2A_Copine C2 domain first repeat in Copine. There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 doma
Probab=99.66 E-value=1.2e-15 Score=120.85 Aligned_cols=98 Identities=15% Similarity=0.229 Sum_probs=80.5
Q ss_pred EEEeeeCCCCCCCCCCCCCeEEEEEECCcC------eEEeEeecCCCCCCeeceEEEEEecCCCccCCCcEEEEEEEecC
Q 047341 9 ILISAQGLKSPSSKMRRMQTYALVWIDSST------KLCTRVDRAGAESPIWNEKFLFKVTPEFLSSETSAISVEIYASG 82 (254)
Q Consensus 9 ~VisA~~L~~~~d~~G~~DPYV~V~l~~~~------k~rTkv~k~gt~NP~WNE~f~F~v~~~~l~~~~~~L~veV~D~d 82 (254)
..++|++|++. +..|.+||||+|.+.+.. .++|+++++ +.||+|||+|.|.+..+ ....|.|+|||++
T Consensus 5 ~~i~a~~L~~~-d~~g~~DPyv~v~~~~~~~~~~~~~~kT~vi~~-t~nP~wne~f~f~~~~~----~~~~l~~~V~d~d 78 (120)
T cd04048 5 LSISCRNLLDK-DVLSKSDPFVVVYVKTGGSGQWVEIGRTEVIKN-NLNPDFVTTFTVDYYFE----EVQKLRFEVYDVD 78 (120)
T ss_pred EEEEccCCCCC-CCCCCCCcEEEEEEEcCCCCceEEeccEeEeCC-CCCCCceEEEEEEEEeE----eeeEEEEEEEEec
Confidence 34889999998 788999999999997653 479999976 99999999999986532 4678999999998
Q ss_pred C-----CCCceeEEEEEeCccccccCCCCCCeeEEEEee
Q 047341 83 Y-----LRDYLIGTVRFLVSNISLSVATKTPSFTAFQIR 116 (254)
Q Consensus 83 ~-----~~D~~LG~~~IpL~~l~~~~~~~~~~~~~~~L~ 116 (254)
. .+|++||++.+++.++..... ...++.|.
T Consensus 79 ~~~~~~~~~d~iG~~~i~l~~l~~~~~----~~~~~~l~ 113 (120)
T cd04048 79 SKSKDLSDHDFLGEAECTLGEIVSSPG----QKLTLPLK 113 (120)
T ss_pred CCcCCCCCCcEEEEEEEEHHHHhcCCC----cEEEEEcc
Confidence 4 578999999999999976532 34677773
No 87
>cd08410 C2B_Synaptotagmin-17 C2 domain second repeat present in Synaptotagmin 17. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-
Probab=99.66 E-value=6e-16 Score=125.61 Aligned_cols=91 Identities=21% Similarity=0.285 Sum_probs=75.2
Q ss_pred cccEEEEEEEeeeCCCCCCCCCCCCCeEEEEEECCc----CeEEeEeecCCCCCCeeceEEEEEecCCCccCCCcEEEEE
Q 047341 2 ATQILEIILISAQGLKSPSSKMRRMQTYALVWIDSS----TKLCTRVDRAGAESPIWNEKFLFKVTPEFLSSETSAISVE 77 (254)
Q Consensus 2 ~~g~L~V~VisA~~L~~~~d~~G~~DPYV~V~l~~~----~k~rTkv~k~gt~NP~WNE~f~F~v~~~~l~~~~~~L~ve 77 (254)
..+.|+|+|++|++|+.. +..|.+||||+|.+.+. .+.+|++.++ +.||+|||+|.|.+..+.+ ....|.|+
T Consensus 12 ~~~~L~V~vi~a~~L~~~-d~~g~~DPyV~v~l~~~~~~~~~~kT~v~~~-t~nP~wnE~F~f~i~~~~l--~~~~l~~~ 87 (135)
T cd08410 12 SAGRLNVDIIRAKQLLQT-DMSQGSDPFVKIQLVHGLKLIKTKKTSCMRG-TIDPFYNESFSFKVPQEEL--ENVSLVFT 87 (135)
T ss_pred CCCeEEEEEEEecCCCcc-cCCCCCCeEEEEEEEcCCcccceEcCccccC-CCCCccceeEEEeCCHHHh--CCCEEEEE
Confidence 357899999999999998 78899999999998432 3468888765 9999999999999965322 34579999
Q ss_pred EEecC-CCCCceeEEEEEeC
Q 047341 78 IYASG-YLRDYLIGTVRFLV 96 (254)
Q Consensus 78 V~D~d-~~~D~~LG~~~IpL 96 (254)
|||++ ..++++||++.|..
T Consensus 88 V~d~d~~~~~~~iG~~~l~~ 107 (135)
T cd08410 88 VYGHNVKSSNDFIGRIVIGQ 107 (135)
T ss_pred EEeCCCCCCCcEEEEEEEcC
Confidence 99998 56799999988764
No 88
>cd08675 C2B_RasGAP C2 domain second repeat of Ras GTPase activating proteins (GAPs). RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin
Probab=99.65 E-value=1.1e-15 Score=124.69 Aligned_cols=106 Identities=19% Similarity=0.329 Sum_probs=85.1
Q ss_pred EEEEEEeeeCCCCCCCCCCCCCeEEEEEECC---cCeEEeEeecCCCCCCeeceEEEEEecCCCc-----------cCCC
Q 047341 6 LEIILISAQGLKSPSSKMRRMQTYALVWIDS---STKLCTRVDRAGAESPIWNEKFLFKVTPEFL-----------SSET 71 (254)
Q Consensus 6 L~V~VisA~~L~~~~d~~G~~DPYV~V~l~~---~~k~rTkv~k~gt~NP~WNE~f~F~v~~~~l-----------~~~~ 71 (254)
|+|+|++|++|+.. ..|.+||||+|.+++ ..+.+|+++++ +.||.|||.|.|.+....- ....
T Consensus 1 L~V~Vi~A~~L~~~--~~g~~dPyv~v~~~~~~~~~~~rT~vv~~-t~nP~Wne~f~f~~~~~~~~~~~~~~~~~~~~~~ 77 (137)
T cd08675 1 LSVRVLECRDLALK--SNGTCDPFARVTLNYSSKTDTKRTKVKKK-TNNPRFDEAFYFELTIGFSYEKKSFKVEEEDLEK 77 (137)
T ss_pred CEEEEEEccCCCcc--cCCCCCcEEEEEEecCCcCCeeccceeeC-CCCCCcceEEEEEccccccccccccccccccccc
Confidence 68999999999876 468899999999984 45779999875 8999999999999876210 0135
Q ss_pred cEEEEEEEecCC-CCCceeEEEEEeCccccccCCCCCCeeEEEEeeCC
Q 047341 72 SAISVEIYASGY-LRDYLIGTVRFLVSNISLSVATKTPSFTAFQIRRP 118 (254)
Q Consensus 72 ~~L~veV~D~d~-~~D~~LG~~~IpL~~l~~~~~~~~~~~~~~~L~~~ 118 (254)
..|.|+|||.+. .++++||++.|+|.++..... ...||+|...
T Consensus 78 ~~l~i~V~d~~~~~~~~~IG~~~i~l~~l~~~~~----~~~W~~L~~~ 121 (137)
T cd08675 78 SELRVELWHASMVSGDDFLGEVRIPLQGLQQAGS----HQAWYFLQPR 121 (137)
T ss_pred cEEEEEEEcCCcCcCCcEEEEEEEehhhccCCCc----ccceEecCCc
Confidence 789999999984 479999999999999875432 3578888653
No 89
>cd04035 C2A_Rabphilin_Doc2 C2 domain first repeat present in Rabphilin and Double C2 domain. Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain
Probab=99.65 E-value=1.9e-15 Score=120.04 Aligned_cols=98 Identities=19% Similarity=0.301 Sum_probs=80.5
Q ss_pred cccEEEEEEEeeeCCCCCCCCCCCCCeEEEEEECC----cCeEEeEeecCCCCCCeeceEEEEE-ecCCCccCCCcEEEE
Q 047341 2 ATQILEIILISAQGLKSPSSKMRRMQTYALVWIDS----STKLCTRVDRAGAESPIWNEKFLFK-VTPEFLSSETSAISV 76 (254)
Q Consensus 2 ~~g~L~V~VisA~~L~~~~d~~G~~DPYV~V~l~~----~~k~rTkv~k~gt~NP~WNE~f~F~-v~~~~l~~~~~~L~v 76 (254)
..+.|+|+|++|++|++. +..+.+||||+|.+.+ ..+.+|+++++ +.||+|||.|.|. +....+ ....|.|
T Consensus 13 ~~~~L~V~v~~a~~L~~~-~~~~~~dpyv~v~~~~~~~~~~~~rT~v~~~-~~~P~Wne~f~f~~~~~~~~--~~~~l~~ 88 (123)
T cd04035 13 ANSALHCTIIRAKGLKAM-DANGLSDPYVKLNLLPGASKATKLRTKTVHK-TRNPEFNETLTYYGITEEDI--QRKTLRL 88 (123)
T ss_pred CCCEEEEEEEEeeCCCCC-CCCCCCCceEEEEEecCCCCCCceeeeeecC-CCCCCccceEEEcCCCHHHh--CCCEEEE
Confidence 357899999999999988 7788999999999854 23679999875 8999999999996 442111 3578999
Q ss_pred EEEecCCCCCceeEEEEEeCccccccC
Q 047341 77 EIYASGYLRDYLIGTVRFLVSNISLSV 103 (254)
Q Consensus 77 eV~D~d~~~D~~LG~~~IpL~~l~~~~ 103 (254)
+|||.+..++++||++.++|.++....
T Consensus 89 ~v~d~~~~~~~~iG~~~i~l~~l~~~~ 115 (123)
T cd04035 89 LVLDEDRFGNDFLGETRIPLKKLKPNQ 115 (123)
T ss_pred EEEEcCCcCCeeEEEEEEEcccCCCCc
Confidence 999998448999999999999987654
No 90
>cd08686 C2_ABR C2 domain in the Active BCR (Breakpoint cluster region) Related protein. The ABR protein is similar to the breakpoint cluster region protein. It has homology to guanine nucleotide exchange proteins and GTPase-activating proteins (GAPs). ABR is expressed primarily in the brain, but also includes non-neuronal tissues such as the heart. It has been associated with human diseases such as Miller-Dieker syndrome in which mental retardation and malformations of the heart are present. ABR contains a RhoGEF domain and a PH-like domain upstream of its C2 domain and a RhoGAP domain downstream of this domain. A few members also contain a Bcr-Abl oncoprotein oligomerization domain at the very N-terminal end. Splice variants of ABR have been identified. ABR is found in a wide variety of organisms including chimpanzee, dog, mouse, rat, fruit fly, and mosquito. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arr
Probab=99.64 E-value=1.6e-15 Score=121.06 Aligned_cols=80 Identities=29% Similarity=0.434 Sum_probs=67.9
Q ss_pred EEEEEEeeeCCCCCCCCCCCCCeEEEEEECCc----CeEEeEeecCCCCCCeeceEEEEEecCCCccCCCcEEEEEEEec
Q 047341 6 LEIILISAQGLKSPSSKMRRMQTYALVWIDSS----TKLCTRVDRAGAESPIWNEKFLFKVTPEFLSSETSAISVEIYAS 81 (254)
Q Consensus 6 L~V~VisA~~L~~~~d~~G~~DPYV~V~l~~~----~k~rTkv~k~gt~NP~WNE~f~F~v~~~~l~~~~~~L~veV~D~ 81 (254)
|.|+|++|+||+.. +||||++.+++. .+++|+++++ ++||+|||+|.|.+.. ...|.|.|||+
T Consensus 1 L~V~V~~A~~L~~~------sDPYV~l~v~~~~~~~~~~KTk~i~~-TlnPvWnE~F~i~l~~------s~~L~~~v~d~ 67 (118)
T cd08686 1 LNVIVHSAQGFKQS------ANLYCTLEVDSFGYFVKKAKTRVCRD-TTEPNWNEEFEIELEG------SQTLRILCYEK 67 (118)
T ss_pred CEEEEEeCCCCCCC------CCCEEEEEEcCccccceeeeeeeecC-CCCCccceEEEEEeCC------CCEEEEEEEEc
Confidence 68999999999743 799999999762 4689999975 9999999999999974 67999999998
Q ss_pred C--------CCCCceeEEEEEeCcc
Q 047341 82 G--------YLRDYLIGTVRFLVSN 98 (254)
Q Consensus 82 d--------~~~D~~LG~~~IpL~~ 98 (254)
. ...|+++|.+.|.|+-
T Consensus 68 ~~~~~~~d~~~~d~~~G~g~i~Ld~ 92 (118)
T cd08686 68 CYSKVKLDGEGTDAIMGKGQIQLDP 92 (118)
T ss_pred ccccccccccCcccEEEEEEEEECH
Confidence 3 2468999999998853
No 91
>cd00276 C2B_Synaptotagmin C2 domain second repeat present in Synaptotagmin. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. There are several classes of Synaptotagmins. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distin
Probab=99.64 E-value=1.5e-15 Score=121.53 Aligned_cols=93 Identities=23% Similarity=0.333 Sum_probs=79.5
Q ss_pred cccEEEEEEEeeeCCCCCCCCCCCCCeEEEEEECCc----CeEEeEeecCCCCCCeeceEEEEEecCCCccCCCcEEEEE
Q 047341 2 ATQILEIILISAQGLKSPSSKMRRMQTYALVWIDSS----TKLCTRVDRAGAESPIWNEKFLFKVTPEFLSSETSAISVE 77 (254)
Q Consensus 2 ~~g~L~V~VisA~~L~~~~d~~G~~DPYV~V~l~~~----~k~rTkv~k~gt~NP~WNE~f~F~v~~~~l~~~~~~L~ve 77 (254)
..+.|.|+|++|++|+.. +..+..||||+|.+.+. .+.+|++.++ +.||.|||+|.|.+....+ ....|.|+
T Consensus 12 ~~~~L~V~v~~a~~L~~~-~~~~~~dpyv~v~l~~~~~~~~~~~T~~~~~-~~~P~wne~f~f~i~~~~l--~~~~l~~~ 87 (134)
T cd00276 12 TAERLTVVVLKARNLPPS-DGKGLSDPYVKVSLLQGGKKLKKKKTSVKKG-TLNPVFNEAFSFDVPAEQL--EEVSLVIT 87 (134)
T ss_pred CCCEEEEEEEEeeCCCCc-cCCCCCCcEEEEEEEcCCeEeeeecCcceec-CCCCeeeeeEEEECCHHHh--CCcEEEEE
Confidence 457899999999999988 77889999999999754 3568888865 8999999999999986322 36789999
Q ss_pred EEecC-CCCCceeEEEEEeCcc
Q 047341 78 IYASG-YLRDYLIGTVRFLVSN 98 (254)
Q Consensus 78 V~D~d-~~~D~~LG~~~IpL~~ 98 (254)
|||.+ ..++++||.+.|++.+
T Consensus 88 v~d~~~~~~~~~lG~~~i~l~~ 109 (134)
T cd00276 88 VVDKDSVGRNEVIGQVVLGPDS 109 (134)
T ss_pred EEecCCCCCCceeEEEEECCCC
Confidence 99998 4678999999999988
No 92
>cd08692 C2B_Tac2-N C2 domain second repeat found in Tac2-N (Tandem C2 protein in Nucleus). Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polypho
Probab=99.62 E-value=2.7e-15 Score=122.46 Aligned_cols=92 Identities=21% Similarity=0.294 Sum_probs=75.7
Q ss_pred ccEEEEEEEeeeCCCCCCCCCCCCCeEEEEEECC--c--CeEEeEeecCCC-CCCeeceEEEEEecCCCccCCCcEEEEE
Q 047341 3 TQILEIILISAQGLKSPSSKMRRMQTYALVWIDS--S--TKLCTRVDRAGA-ESPIWNEKFLFKVTPEFLSSETSAISVE 77 (254)
Q Consensus 3 ~g~L~V~VisA~~L~~~~d~~G~~DPYV~V~l~~--~--~k~rTkv~k~gt-~NP~WNE~f~F~v~~~~l~~~~~~L~ve 77 (254)
.+.|.|+|++|++|++. ...+..||||+|.+-+ . .+.+|++.++ + .||+|||+|.|.|+.+. ....|.|+
T Consensus 13 ~~rLtV~VikarnL~~~-~~~~~~dpYVKV~L~~~~k~~~KkKT~v~k~-t~~~P~fNEsF~Fdv~~~~---~~v~l~v~ 87 (135)
T cd08692 13 NSRIQLQILEAQNLPSS-STPLTLSFFVKVGMFSTGGLLYKKKTRLVKS-SNGQVKWGETMIFPVTQQE---HGIQFLIK 87 (135)
T ss_pred CCeEEEEEEEccCCCcc-cCCCCCCcEEEEEEEECCCcceeecCccEEC-CCCCceecceEEEeCCchh---heeEEEEE
Confidence 57899999999999987 4566779999999853 2 4678988875 6 57999999999998742 35788899
Q ss_pred EEecC-CCCCceeEEEEEeCccc
Q 047341 78 IYASG-YLRDYLIGTVRFLVSNI 99 (254)
Q Consensus 78 V~D~d-~~~D~~LG~~~IpL~~l 99 (254)
|||++ ..++++||.+.++.+..
T Consensus 88 v~d~~~~~~n~~IG~v~lG~~~~ 110 (135)
T cd08692 88 LYSRSSVRRKHFLGQVWISSDSS 110 (135)
T ss_pred EEeCCCCcCCceEEEEEECCccC
Confidence 99998 56799999999998763
No 93
>KOG0696 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=99.60 E-value=4.4e-16 Score=146.14 Aligned_cols=105 Identities=20% Similarity=0.349 Sum_probs=91.7
Q ss_pred ccEEEEEEEeeeCCCCCCCCCCCCCeEEEEEECCc----CeEEeEeecCCCCCCeeceEEEEEecCCCccCCCcEEEEEE
Q 047341 3 TQILEIILISAQGLKSPSSKMRRMQTYALVWIDSS----TKLCTRVDRAGAESPIWNEKFLFKVTPEFLSSETSAISVEI 78 (254)
Q Consensus 3 ~g~L~V~VisA~~L~~~~d~~G~~DPYV~V~l~~~----~k~rTkv~k~gt~NP~WNE~f~F~v~~~~l~~~~~~L~veV 78 (254)
...|.|+|..|+||.++ |.+|-+||||++.+-|. .|.+|++++. ++||+|||+|+|.+.++. ....|.|+|
T Consensus 179 ~~~l~v~i~ea~NLiPM-DpNGlSDPYvk~kliPD~~~~sKqKTkTik~-~LNP~wNEtftf~Lkp~D---kdrRlsiEv 253 (683)
T KOG0696|consen 179 RDVLTVTIKEAKNLIPM-DPNGLSDPYVKLKLIPDPKNESKQKTKTIKA-TLNPVWNETFTFKLKPSD---KDRRLSIEV 253 (683)
T ss_pred CceEEEEehhhcccccc-CCCCCCCcceeEEeccCCcchhhhhhhhhhh-hcCccccceeEEeccccc---ccceeEEEE
Confidence 35689999999999999 99999999999999653 5678999886 999999999999998753 589999999
Q ss_pred EecC-CCCCceeEEEEEeCccccccCCCCCCeeEEEEeeC
Q 047341 79 YASG-YLRDYLIGTVRFLVSNISLSVATKTPSFTAFQIRR 117 (254)
Q Consensus 79 ~D~d-~~~D~~LG~~~IpL~~l~~~~~~~~~~~~~~~L~~ 117 (254)
||+| ..+++|+|+..+.+++|...+. ..||.|..
T Consensus 254 WDWDrTsRNDFMGslSFgisEl~K~p~-----~GWyKlLs 288 (683)
T KOG0696|consen 254 WDWDRTSRNDFMGSLSFGISELQKAPV-----DGWYKLLS 288 (683)
T ss_pred ecccccccccccceecccHHHHhhcch-----hhHHHHhh
Confidence 9999 7789999999999999987765 35788765
No 94
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=99.59 E-value=4.2e-15 Score=160.76 Aligned_cols=120 Identities=13% Similarity=0.228 Sum_probs=99.8
Q ss_pred ccEEEEEEEeeeCCCCCCCCCCCCCeEEEEEECCcCeEEeEeecCCCCCCeeceEEEEEecCCCccCCCcEEEEEEEecC
Q 047341 3 TQILEIILISAQGLKSPSSKMRRMQTYALVWIDSSTKLCTRVDRAGAESPIWNEKFLFKVTPEFLSSETSAISVEIYASG 82 (254)
Q Consensus 3 ~g~L~V~VisA~~L~~~~d~~G~~DPYV~V~l~~~~k~rTkv~k~gt~NP~WNE~f~F~v~~~~l~~~~~~L~veV~D~d 82 (254)
.|.|.|+|++|+||. +.+|.+||||+|.++.+.+.||+++++ +.||+|||.|+|.+.... .+..|+|+|||++
T Consensus 1979 ~G~L~V~V~~a~nl~---~~~~~sdPyv~l~~g~~~~~kTkvvk~-~~nP~Wne~f~~~~~~p~---~~~~l~iev~d~d 2051 (2102)
T PLN03200 1979 PGSLTVTIKRGNNLK---QSMGNTNAFCKLTLGNGPPRQTKVVSH-SSSPEWKEGFTWAFDSPP---KGQKLHISCKSKN 2051 (2102)
T ss_pred CcceEEEEeeccccc---cccCCCCCeEEEEECCCCcccccccCC-CCCCCcccceeeeecCCC---CCCceEEEEEecC
Confidence 478999999999998 247899999999998665669999986 899999999998887632 3578999999999
Q ss_pred CCCCceeEEEEEeCccccccCCCCCCeeEEEEeeCCCCCcceE---EEEEEEEEe
Q 047341 83 YLRDYLIGTVRFLVSNISLSVATKTPSFTAFQIRRPSGRFQGV---LSIGSMLID 134 (254)
Q Consensus 83 ~~~D~~LG~~~IpL~~l~~~~~~~~~~~~~~~L~~~~g~~~G~---I~lsl~f~p 134 (254)
.++++.+|.+.|+|.++..++. ...+|+|.. +|+..|. |++.+.|.+
T Consensus 2052 ~f~kd~~G~~~i~l~~vv~~~~----~~~~~~L~~-~~~k~G~~~~~~~e~~w~~ 2101 (2102)
T PLN03200 2052 TFGKSSLGKVTIQIDRVVMEGT----YSGEYSLNP-ESNKDGSSRTLEIEFQWSN 2101 (2102)
T ss_pred ccCCCCCceEEEEHHHHhcCce----eeeeeecCc-ccccCCCcceEEEEEEecC
Confidence 6687899999999999987654 357889874 4566777 999988764
No 95
>cd04047 C2B_Copine C2 domain second repeat in Copine. There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 dom
Probab=99.58 E-value=2.9e-14 Score=110.98 Aligned_cols=92 Identities=16% Similarity=0.220 Sum_probs=73.2
Q ss_pred EEEEeeeCCCCCCCCCCCCCeEEEEEECCc-----CeEEeEeecCCCCCCeeceEEEEEecCCCccCCCcEEEEEEEecC
Q 047341 8 IILISAQGLKSPSSKMRRMQTYALVWIDSS-----TKLCTRVDRAGAESPIWNEKFLFKVTPEFLSSETSAISVEIYASG 82 (254)
Q Consensus 8 V~VisA~~L~~~~d~~G~~DPYV~V~l~~~-----~k~rTkv~k~gt~NP~WNE~f~F~v~~~~l~~~~~~L~veV~D~d 82 (254)
+-.++|++|+.. +..|.+||||+|.+.+. ..++|+++++ +.||+|| .|.|++..-.-......|.|+|||++
T Consensus 4 ~~~i~a~~L~~~-d~~~~~DPyv~v~~~~~~~~~~~~~kT~vi~~-t~nP~Wn-~f~~~~~~l~~~~~~~~l~~~V~d~d 80 (110)
T cd04047 4 ELQFSGKKLDKK-DFFGKSDPFLEISRQSEDGTWVLVYRTEVIKN-TLNPVWK-PFTIPLQKLCNGDYDRPIKIEVYDYD 80 (110)
T ss_pred EEEEEeCCCCCC-CCCCCCCeeEEEEEECCCCCEEEEEeeeEecc-CCCCceE-EEEEEHHHhcCCCcCCEEEEEEEEeC
Confidence 445699999998 88899999999998654 2579999975 8999999 68887642000012679999999999
Q ss_pred -CCCCceeEEEEEeCcccccc
Q 047341 83 -YLRDYLIGTVRFLVSNISLS 102 (254)
Q Consensus 83 -~~~D~~LG~~~IpL~~l~~~ 102 (254)
..+|++||++.+++.++...
T Consensus 81 ~~~~d~~iG~~~~~l~~l~~~ 101 (110)
T cd04047 81 SSGKHDLIGEFETTLDELLKS 101 (110)
T ss_pred CCCCCcEEEEEEEEHHHHhcC
Confidence 45789999999999998744
No 96
>PF00168 C2: C2 domain; InterPro: IPR000008 The C2 domain is a Ca2+-dependent membrane-targeting module found in many cellular proteins involved in signal transduction or membrane trafficking. C2 domains are unique among membrane targeting domains in that they show wide range of lipid selectivity for the major components of cell membranes, including phosphatidylserine and phosphatidylcholine. This C2 domain is about 116 amino-acid residues and is located between the two copies of the C1 domain in Protein Kinase C (that bind phorbol esters and diacylglycerol) (see PDOC00379 from PROSITEDOC) and the protein kinase catalytic domain (see PDOC00100 from PROSITEDOC). Regions with significant homology [] to the C2-domain have been found in many proteins. The C2 domain is thought to be involved in calcium-dependent phospholipid binding [] and in membrane targetting processes such as subcellular localisation. The 3D structure of the C2 domain of synaptotagmin has been reported [], the domain forms an eight-stranded beta sandwich constructed around a conserved 4-stranded motif, designated a C2 key []. Calcium binds in a cup-shaped depression formed by the N- and C-terminal loops of the C2-key motif. Structural analyses of several C2 domains have shown them to consist of similar ternary structures in which three Ca2+-binding loops are located at the end of an 8 stranded antiparallel beta sandwich. ; GO: 0005515 protein binding; PDB: 1RSY_A 1BYN_A 3NSJ_A 3QR1_D 3HN8_C 1DQV_A 3M7F_B 3KWU_A 3KWT_A 1V27_A ....
Probab=99.57 E-value=2.1e-14 Score=104.63 Aligned_cols=82 Identities=29% Similarity=0.543 Sum_probs=70.1
Q ss_pred EEEEEEeeeCCCCCCCCCCCCCeEEEEEECCcC--eEEeEeecCCCCCCeeceEEEEEecCCCccCCCcEEEEEEEecCC
Q 047341 6 LEIILISAQGLKSPSSKMRRMQTYALVWIDSST--KLCTRVDRAGAESPIWNEKFLFKVTPEFLSSETSAISVEIYASGY 83 (254)
Q Consensus 6 L~V~VisA~~L~~~~d~~G~~DPYV~V~l~~~~--k~rTkv~k~gt~NP~WNE~f~F~v~~~~l~~~~~~L~veV~D~d~ 83 (254)
|+|+|++|++|... +..+..||||++.+++.. .++|++.++ +.+|.|||.|.|.+... ....|.|+|||.+.
T Consensus 1 L~v~I~~a~~L~~~-~~~~~~~~yv~v~~~~~~~~~~~T~~~~~-~~~P~w~e~~~~~~~~~----~~~~l~~~V~~~~~ 74 (85)
T PF00168_consen 1 LTVTIHSARNLPSK-DSNGKPDPYVRVSVNGSESTKYKTKVKKN-TSNPVWNEEFEFPLDDP----DLDSLSFEVWDKDS 74 (85)
T ss_dssp EEEEEEEEESSSSS-STTSSBEEEEEEEEETTTCEEEEECCBSS-BSSEEEEEEEEEEESHG----CGTEEEEEEEEETS
T ss_pred CEEEEEEEECCCCc-ccCCcccccceeecceeeeeeeeeeeeec-cccceeeeeeeeeeecc----cccceEEEEEECCC
Confidence 78999999999987 677899999999998754 389998875 79999999999997764 35569999999995
Q ss_pred C-CCceeEEEE
Q 047341 84 L-RDYLIGTVR 93 (254)
Q Consensus 84 ~-~D~~LG~~~ 93 (254)
. .|++||++.
T Consensus 75 ~~~~~~iG~~~ 85 (85)
T PF00168_consen 75 FGKDELIGEVK 85 (85)
T ss_dssp SSSEEEEEEEE
T ss_pred CCCCCEEEEEC
Confidence 4 499999974
No 97
>COG5038 Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only]
Probab=99.47 E-value=2.5e-13 Score=139.12 Aligned_cols=124 Identities=19% Similarity=0.320 Sum_probs=105.0
Q ss_pred cccEEEEEEEeeeCCCCCCC--CCCCCCeEEEEEECCcCeEEeEeecCCCCCCeeceEEEEEecCCCccCCCcEEEEEEE
Q 047341 2 ATQILEIILISAQGLKSPSS--KMRRMQTYALVWIDSSTKLCTRVDRAGAESPIWNEKFLFKVTPEFLSSETSAISVEIY 79 (254)
Q Consensus 2 ~~g~L~V~VisA~~L~~~~d--~~G~~DPYV~V~l~~~~k~rTkv~k~gt~NP~WNE~f~F~v~~~~l~~~~~~L~veV~ 79 (254)
+.|+|.|+|.+|++|+.. + ..+.+|||+++........||++.++ +.||+|||+|+..+.. -...|.|+||
T Consensus 434 aIGVv~vkI~sa~~lk~~-d~~i~~~vDpyit~~~~~r~~gkT~v~~n-t~nPvwNEt~Yi~lns-----~~d~L~Lsly 506 (1227)
T COG5038 434 AIGVVEVKIKSAEGLKKS-DSTINGTVDPYITVTFSDRVIGKTRVKKN-TLNPVWNETFYILLNS-----FTDPLNLSLY 506 (1227)
T ss_pred eeEEEEEEEeeccCcccc-cccccCCCCceEEEEeccccCCccceeec-cCCccccceEEEEecc-----cCCceeEEEE
Confidence 579999999999999987 5 57899999999988766779999875 9999999999999986 3899999999
Q ss_pred ecC-CCCCceeEEEEEeCccccccCCCCCCeeEEEEeeCCCCCcceEEEEEEEEEeCC
Q 047341 80 ASG-YLRDYLIGTVRFLVSNISLSVATKTPSFTAFQIRRPSGRFQGVLSIGSMLIDGS 136 (254)
Q Consensus 80 D~d-~~~D~~LG~~~IpL~~l~~~~~~~~~~~~~~~L~~~~g~~~G~I~lsl~f~p~~ 136 (254)
|.+ ...|+.+|.+.++|..|...... ....|+++. +.+..|.|++.+.|.|.-
T Consensus 507 D~n~~~sd~vvG~~~l~L~~L~~~~~~---~ne~~e~~~-~~k~vGrL~yDl~ffp~~ 560 (1227)
T COG5038 507 DFNSFKSDKVVGSTQLDLALLHQNPVK---KNELYEFLR-NTKNVGRLTYDLRFFPVI 560 (1227)
T ss_pred eccccCCcceeeeEEechHHhhhcccc---ccceeeeec-cCccceEEEEeeeeeccc
Confidence 976 77899999999999988765532 233566654 578899999999999864
No 98
>smart00239 C2 Protein kinase C conserved region 2 (CalB). Ca2+-binding motif present in phospholipases, protein kinases C, and synaptotamins (among others). Some do not appear to contain Ca2+-binding sites. Particular C2s appear to bind phospholipids, inositol polyphosphates, and intracellular proteins. Unusual occurrence in perforin. Synaptotagmin and PLC C2s are permuted in sequence with respect to N- and C-terminal beta strands. SMART detects C2 domains using one or both of two profiles.
Probab=99.43 E-value=2.1e-12 Score=95.68 Aligned_cols=93 Identities=32% Similarity=0.523 Sum_probs=78.0
Q ss_pred EEEEEEEeeeCCCCCCCCCCCCCeEEEEEECCc--CeEEeEeecCCCCCCeeceEEEEEecCCCccCCCcEEEEEEEecC
Q 047341 5 ILEIILISAQGLKSPSSKMRRMQTYALVWIDSS--TKLCTRVDRAGAESPIWNEKFLFKVTPEFLSSETSAISVEIYASG 82 (254)
Q Consensus 5 ~L~V~VisA~~L~~~~d~~G~~DPYV~V~l~~~--~k~rTkv~k~gt~NP~WNE~f~F~v~~~~l~~~~~~L~veV~D~d 82 (254)
.|.|.|++|++|... ...+..+|||++.+.+. ...+|++..+ +.||.|||.|.|.+... ....|.|+|||..
T Consensus 1 ~l~i~i~~~~~l~~~-~~~~~~~~yv~v~~~~~~~~~~~T~~~~~-~~~P~w~e~~~~~~~~~----~~~~l~i~v~~~~ 74 (101)
T smart00239 1 TLTVKIISARNLPKK-DKKGKSDPYVKVSLDGDPKEKKKTKVVKN-TLNPVWNETFEFEVPPP----ELAELEIEVYDKD 74 (101)
T ss_pred CeEEEEEEeeCCCCC-CCCCCCCceEEEEEeCCccceEeeeEecC-CCCCcccceEEEEecCc----ccCEEEEEEEecC
Confidence 378999999999987 45567999999999875 5679988865 67999999999999862 2789999999998
Q ss_pred C-CCCceeEEEEEeCccccccC
Q 047341 83 Y-LRDYLIGTVRFLVSNISLSV 103 (254)
Q Consensus 83 ~-~~D~~LG~~~IpL~~l~~~~ 103 (254)
. .++.+||.+.+++.++..+.
T Consensus 75 ~~~~~~~~G~~~~~l~~~~~~~ 96 (101)
T smart00239 75 RFGRDDFIGQVTIPLSDLLLGG 96 (101)
T ss_pred CccCCceeEEEEEEHHHcccCc
Confidence 4 35899999999999886554
No 99
>cd08374 C2F_Ferlin C2 domain sixth repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.43 E-value=1.2e-12 Score=106.59 Aligned_cols=95 Identities=16% Similarity=0.312 Sum_probs=77.9
Q ss_pred EEEEEEeeeCCCCCC-CCCC--CCCeEEEEEECC--cCeEEeEeecCCCCC--CeeceEEEEEecC--------------
Q 047341 6 LEIILISAQGLKSPS-SKMR--RMQTYALVWIDS--STKLCTRVDRAGAES--PIWNEKFLFKVTP-------------- 64 (254)
Q Consensus 6 L~V~VisA~~L~~~~-d~~G--~~DPYV~V~l~~--~~k~rTkv~k~gt~N--P~WNE~f~F~v~~-------------- 64 (254)
|||.|..|+++.... ...| .+||||++++.+ ..+++|.|+.+ ++| |.||+.|.|++..
T Consensus 2 LRViIw~~~~v~~~~~~~~g~~~sD~yVK~~L~~~~~~kqkTDVHyr-slnG~~~FNwRfvF~~~~~~~~~~~~~~~~~~ 80 (133)
T cd08374 2 LRVIVWNTRDVLNDDTNITGEKMSDIYVKGWLDGLEEDKQKTDVHYR-SLDGEGNFNWRFVFPFDYLPAEKKIVVIKKEH 80 (133)
T ss_pred EEEEEEECcCCcccccccCCccccCeEEEEEEccCcccccccceEEe-cCCCCcEEeEEEEEeeecCCccceeEEEeecc
Confidence 899999999965431 3356 499999999987 36789999986 889 9999999998765
Q ss_pred -------CCccCCCcEEEEEEEecC-CCCCceeEEEEEeCccccccC
Q 047341 65 -------EFLSSETSAISVEIYASG-YLRDYLIGTVRFLVSNISLSV 103 (254)
Q Consensus 65 -------~~l~~~~~~L~veV~D~d-~~~D~~LG~~~IpL~~l~~~~ 103 (254)
+.+ ....|.|+|||.| +..|++||++.++|..+..+.
T Consensus 81 ~~~~~~~e~~--~~~~L~lqvwD~D~~s~dd~iG~~~l~l~~l~~~~ 125 (133)
T cd08374 81 FWSLDETEYK--IPPKLTLQVWDNDKFSPDDFLGSLELDLSILPRPA 125 (133)
T ss_pred ccccCcceEe--cCcEEEEEEEECcccCCCCcceEEEEEhhhccccc
Confidence 221 3678999999999 668999999999999887654
No 100
>PLN02270 phospholipase D alpha
Probab=99.43 E-value=2e-12 Score=130.16 Aligned_cols=130 Identities=15% Similarity=0.104 Sum_probs=107.4
Q ss_pred ccEEEEEEEeeeCCCCC-----------------CCCCCCCCeEEEEEECCcCeEEeEeecCCCCCCeeceEEEEEecCC
Q 047341 3 TQILEIILISAQGLKSP-----------------SSKMRRMQTYALVWIDSSTKLCTRVDRAGAESPIWNEKFLFKVTPE 65 (254)
Q Consensus 3 ~g~L~V~VisA~~L~~~-----------------~d~~G~~DPYV~V~l~~~~k~rTkv~k~gt~NP~WNE~f~F~v~~~ 65 (254)
.|+|+|+|..|++|++. ....+.+||||.|.+.+..-.||+++.+...||.|||.|.+++.-
T Consensus 7 hg~l~~~i~ea~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~tv~~~~a~v~rtr~~~~~~~~p~w~e~f~i~~ah- 85 (808)
T PLN02270 7 HGTLHATIYEVDKLHSGGGPGFLGKLVANVEETVGVGKGESQLYATIDLEKARVGRTRKIENEPKNPRWYESFHIYCAH- 85 (808)
T ss_pred ecceEEEEEEcccCCCcchhhHHHHHHhccchhccCCCCCCCceEEEEeCCcEEEEEeecCCCCCCCccccceEEeecc-
Confidence 57899999999999862 011246799999999988778999997655799999999999974
Q ss_pred CccCCCcEEEEEEEecCCCCCceeEEEEEeCccccccCCCCCCeeEEEEeeCCCCCcc---eEEEEEEEEEeCCCCCCc
Q 047341 66 FLSSETSAISVEIYASGYLRDYLIGTVRFLVSNISLSVATKTPSFTAFQIRRPSGRFQ---GVLSIGSMLIDGSDLPAF 141 (254)
Q Consensus 66 ~l~~~~~~L~veV~D~d~~~D~~LG~~~IpL~~l~~~~~~~~~~~~~~~L~~~~g~~~---G~I~lsl~f~p~~~~p~l 141 (254)
....|.|.|.|.+..+..+||.+.||+.++..+.. -..|+++...+|++. -.|++++.|.|....|.+
T Consensus 86 ----~~~~v~f~vkd~~~~g~~~ig~~~~p~~~~~~g~~----i~~~~~~~~~~~~p~~~~~~~~~~~~f~~~~~~~~~ 156 (808)
T PLN02270 86 ----MASNIIFTVKDDNPIGATLIGRAYIPVEEILDGEE----VDRWVEILDNDKNPIHGGSKIHVKLQYFEVTKDRNW 156 (808)
T ss_pred ----CcceEEEEEecCCccCceEEEEEEEEHHHhcCCCc----cccEEeccCCCCCcCCCCCEEEEEEEEEEcccCcch
Confidence 47899999999998899999999999999988754 347899988776542 389999999997765544
No 101
>PLN02223 phosphoinositide phospholipase C
Probab=99.41 E-value=3.4e-12 Score=123.99 Aligned_cols=107 Identities=21% Similarity=0.332 Sum_probs=84.1
Q ss_pred cEEEEEEEeeeCCC-CC---CCCCCCCCeEEEEEECCc----CeEEeEeecCCCCCCeeceEEEEEecCCCccCCCcEEE
Q 047341 4 QILEIILISAQGLK-SP---SSKMRRMQTYALVWIDSS----TKLCTRVDRAGAESPIWNEKFLFKVTPEFLSSETSAIS 75 (254)
Q Consensus 4 g~L~V~VisA~~L~-~~---~d~~G~~DPYV~V~l~~~----~k~rTkv~k~gt~NP~WNE~f~F~v~~~~l~~~~~~L~ 75 (254)
.+|.|+|++|+++. +. .+.....||||+|.|.|. .+.+|.|. +++.||+|||+|.|.|... +-..|.
T Consensus 409 ~~L~V~Visgq~~~~~~~k~~~~~s~~DpyV~VeI~Gvp~D~~~~kT~v~-nNg~nPvWne~F~F~i~~P----ELAlLr 483 (537)
T PLN02223 409 KILKVKIYMGDGWIVDFKKRIGRLSKPDLYVRISIAGVPHDEKIMKTTVK-NNEWKPTWGEEFTFPLTYP----DLALIS 483 (537)
T ss_pred eEEEEEEEEcccccCCcccccCCCCCCCeEEEEEEeeccCCcceeEEEeC-CCCcCceecceeEEEEEcc----CceEEE
Confidence 57999999999874 11 022346899999999752 35578654 5699999999999998753 457899
Q ss_pred EEEEecC-CCCCceeEEEEEeCccccccCCCCCCeeEEEEeeCCCCCc
Q 047341 76 VEIYASG-YLRDYLIGTVRFLVSNISLSVATKTPSFTAFQIRRPSGRF 122 (254)
Q Consensus 76 veV~D~d-~~~D~~LG~~~IpL~~l~~~~~~~~~~~~~~~L~~~~g~~ 122 (254)
|+|+|+| ...|+|||++.+|+..+..+. ++.+|++..|..
T Consensus 484 f~V~D~D~~~~ddfiGQ~~LPv~~Lr~Gy-------R~VpL~~~~g~~ 524 (537)
T PLN02223 484 FEVYDYEVSTADAFCGQTCLPVSELIEGI-------RAVPLYDERGKA 524 (537)
T ss_pred EEEEecCCCCCCcEEEEEecchHHhcCCc-------eeEeccCCCcCC
Confidence 9999999 457899999999999987664 677888777754
No 102
>COG5038 Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only]
Probab=99.38 E-value=4.7e-12 Score=129.93 Aligned_cols=153 Identities=19% Similarity=0.194 Sum_probs=113.4
Q ss_pred cccEEEEEEEeeeCCCCCCCCCCCCCeEEEEEECCcCeEEeEeecCCCCCCeeceEEEEEecCCCccCCCcEEEEEEEec
Q 047341 2 ATQILEIILISAQGLKSPSSKMRRMQTYALVWIDSSTKLCTRVDRAGAESPIWNEKFLFKVTPEFLSSETSAISVEIYAS 81 (254)
Q Consensus 2 ~~g~L~V~VisA~~L~~~~d~~G~~DPYV~V~l~~~~k~rTkv~k~gt~NP~WNE~f~F~v~~~~l~~~~~~L~veV~D~ 81 (254)
..|.++|.|..|.+|.+. ...|++|||++|.+++..++||-.. ..++||+||+..+.++.. ..+.|.++++|.
T Consensus 709 pIg~irv~v~~andl~n~-i~g~~~dPya~v~~n~~~k~rti~~-~~~~npiw~~i~Yv~v~s-----k~~r~~l~~~~~ 781 (1227)
T COG5038 709 PIGAIRVSVRKANDLRNE-IPGGKSDPYATVLVNNLVKYRTIYG-SSTLNPIWNEILYVPVTS-----KNQRLTLECMDY 781 (1227)
T ss_pred ccceEEEEeehhhccccc-ccCcccccceEEEecceeEEEEecc-cCccccceeeeEEEEecC-----CccEEeeeeecc
Confidence 578999999999999987 7889999999999999888999544 459999999999999987 578899999999
Q ss_pred C-CCCCceeEEEEEeCccccccCCCCCC-e-----eEEEEeeCCCCCcceEEEEEEEEEeCCCCCCcccccccccccccc
Q 047341 82 G-YLRDYLIGTVRFLVSNISLSVATKTP-S-----FTAFQIRRPSGRFQGVLSIGSMLIDGSDLPAFDEVSAIGYRDLMG 154 (254)
Q Consensus 82 d-~~~D~~LG~~~IpL~~l~~~~~~~~~-~-----~~~~~L~~~~g~~~G~I~lsl~f~p~~~~p~l~~~~~~~~~dl~~ 154 (254)
+ ...|++||++.|++.++....++... . ...-+|..+....+|+|+|.++|+|. +...+..+.++..+
T Consensus 782 ~~sgddr~lg~~~i~vsn~~~k~~~s~~~~~i~g~~~t~~l~~~~~~~~~tit~~~~f~p~-----~i~~s~ee~~~~~k 856 (1227)
T COG5038 782 EESGDDRNLGEVNINVSNVSKKDEDSALMETIDGAEETGKLSLTGKKVKGTITYKCRFYPA-----VIVLSLEEVRYVDK 856 (1227)
T ss_pred hhccccceeceeeeeeeeeeecCCCcceEEeecCcccccccccccCCcceeEEEEEEEEee-----cccCChHHhcchhh
Confidence 8 55689999999999998875542211 1 11112222234679999999999955 44444455555444
Q ss_pred chhHHHhhhhhc
Q 047341 155 ESKRKESLMTRK 166 (254)
Q Consensus 155 ~~~~~~~~~~~k 166 (254)
...+.++.+++|
T Consensus 857 ~~~e~~~~~~~~ 868 (1227)
T COG5038 857 VSSEKRKSEKRK 868 (1227)
T ss_pred hhhHHHHhhhhh
Confidence 444444433333
No 103
>KOG1011 consensus Neurotransmitter release regulator, UNC-13 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.38 E-value=7.4e-13 Score=129.10 Aligned_cols=116 Identities=21% Similarity=0.348 Sum_probs=93.4
Q ss_pred cEEEEEEEeeeCCCCCCCCCCCCCeEEEEEECCcCeEEeEeecCCCCCCeeceEEEEEecCCCccCCCcEEEEEEEecCC
Q 047341 4 QILEIILISAQGLKSPSSKMRRMQTYALVWIDSSTKLCTRVDRAGAESPIWNEKFLFKVTPEFLSSETSAISVEIYASGY 83 (254)
Q Consensus 4 g~L~V~VisA~~L~~~~d~~G~~DPYV~V~l~~~~k~rTkv~k~gt~NP~WNE~f~F~v~~~~l~~~~~~L~veV~D~d~ 83 (254)
..+.++|++|++|... |..|++||||.+.++.. +.||+++. +.+||+|||.|.|.+.+ ....|.+.|||++.
T Consensus 295 akitltvlcaqgl~ak-dktg~sdpyvt~qv~kt-krrtrti~-~~lnpvw~ekfhfechn-----stdrikvrvwded~ 366 (1283)
T KOG1011|consen 295 AKITLTVLCAQGLIAK-DKTGKSDPYVTAQVGKT-KRRTRTIH-QELNPVWNEKFHFECHN-----STDRIKVRVWDEDN 366 (1283)
T ss_pred eeeEEeeeecccceec-ccCCCCCCcEEEeeccc-chhhHhhh-hccchhhhhheeeeecC-----CCceeEEEEecCcc
Confidence 3578999999999998 89999999999999754 55888886 48999999999999987 47899999999873
Q ss_pred ------------CCCceeEEEEEeCccccccCCCCCCeeEEEEeeCC--CCCcceEEEEEEEEE
Q 047341 84 ------------LRDYLIGTVRFLVSNISLSVATKTPSFTAFQIRRP--SGRFQGVLSIGSMLI 133 (254)
Q Consensus 84 ------------~~D~~LG~~~IpL~~l~~~~~~~~~~~~~~~L~~~--~g~~~G~I~lsl~f~ 133 (254)
.+|+|||+..|-+..+...- ..||.|... +....|-|++.++..
T Consensus 367 dlksklrqkl~resddflgqtvievrtlsgem------dvwynlekrtdksavsgairlhisve 424 (1283)
T KOG1011|consen 367 DLKSKLRQKLTRESDDFLGQTVIEVRTLSGEM------DVWYNLEKRTDKSAVSGAIRLHISVE 424 (1283)
T ss_pred cHHHHHHHHhhhcccccccceeEEEEecccch------hhhcchhhccchhhccceEEEEEEEE
Confidence 25999999999887764322 378888532 445678777766654
No 104
>cd00030 C2 C2 domain. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions.
Probab=99.37 E-value=7.6e-12 Score=91.74 Aligned_cols=89 Identities=26% Similarity=0.472 Sum_probs=76.2
Q ss_pred EEEEEEeeeCCCCCCCCCCCCCeEEEEEECCcCeEEeEeecCCCCCCeeceEEEEEecCCCccCCCcEEEEEEEecCC-C
Q 047341 6 LEIILISAQGLKSPSSKMRRMQTYALVWIDSSTKLCTRVDRAGAESPIWNEKFLFKVTPEFLSSETSAISVEIYASGY-L 84 (254)
Q Consensus 6 L~V~VisA~~L~~~~d~~G~~DPYV~V~l~~~~k~rTkv~k~gt~NP~WNE~f~F~v~~~~l~~~~~~L~veV~D~d~-~ 84 (254)
|.|.|++|++|... ...+..+|||++.+.+....+|++..+ +.||.|||.|.|.+... ....|.|+||+.+. .
T Consensus 1 l~v~i~~~~~l~~~-~~~~~~~~~v~v~~~~~~~~~T~~~~~-~~~P~w~~~~~~~~~~~----~~~~l~i~v~~~~~~~ 74 (102)
T cd00030 1 LRVTVIEARNLPAK-DLNGKSDPYVKVSLGGKQKFKTKVVKN-TLNPVWNETFEFPVLDP----ESDTLTVEVWDKDRFS 74 (102)
T ss_pred CEEEEEeeeCCCCc-CCCCCCCcEEEEEeccCceEecceeCC-CCCCcccceEEEEccCC----CCCEEEEEEEecCCCC
Confidence 57999999999886 466789999999998756779988865 79999999999999752 36889999999984 4
Q ss_pred CCceeEEEEEeCcccc
Q 047341 85 RDYLIGTVRFLVSNIS 100 (254)
Q Consensus 85 ~D~~LG~~~IpL~~l~ 100 (254)
.+++||.+.+++.++.
T Consensus 75 ~~~~ig~~~~~l~~l~ 90 (102)
T cd00030 75 KDDFLGEVEIPLSELL 90 (102)
T ss_pred CCceeEEEEEeHHHhh
Confidence 5899999999999987
No 105
>PLN02952 phosphoinositide phospholipase C
Probab=99.37 E-value=8e-12 Score=123.30 Aligned_cols=117 Identities=17% Similarity=0.242 Sum_probs=92.0
Q ss_pred cEEEEEEEeeeCCCCCC-----CCCCCCCeEEEEEECC----cCeEEeEeecCCCCCCeeceEEEEEecCCCccCCCcEE
Q 047341 4 QILEIILISAQGLKSPS-----SKMRRMQTYALVWIDS----STKLCTRVDRAGAESPIWNEKFLFKVTPEFLSSETSAI 74 (254)
Q Consensus 4 g~L~V~VisA~~L~~~~-----d~~G~~DPYV~V~l~~----~~k~rTkv~k~gt~NP~WNE~f~F~v~~~~l~~~~~~L 74 (254)
..|.|+|++|++|+... +.....||||+|.+.| ..+.+|+++.+ +.||+|||+|.|++... +-..|
T Consensus 470 ~~L~V~VisGq~l~lp~~~~~~~~~~~~D~yV~V~i~G~p~D~~~~kTkvi~n-N~nPvWnE~F~F~i~~P----ELAll 544 (599)
T PLN02952 470 KTLKVKVYLGDGWRLDFSHTHFDSYSPPDFYTKMYIVGVPADNAKKKTKIIED-NWYPAWNEEFSFPLTVP----ELALL 544 (599)
T ss_pred ceEEEEEEECcccCCCCccccCCccCCCCceEEEEEeccCCCCcceeeeeccC-CCCcccCCeeEEEEEcC----CccEE
Confidence 57999999999975321 1223469999999975 25669999876 59999999999998763 45789
Q ss_pred EEEEEecC-CCCCceeEEEEEeCccccccCCCCCCeeEEEEeeCCCCCcceEEEEEEEE
Q 047341 75 SVEIYASG-YLRDYLIGTVRFLVSNISLSVATKTPSFTAFQIRRPSGRFQGVLSIGSML 132 (254)
Q Consensus 75 ~veV~D~d-~~~D~~LG~~~IpL~~l~~~~~~~~~~~~~~~L~~~~g~~~G~I~lsl~f 132 (254)
.|+|+|+| ...|+|+|++.|||..|..+. ++++|++..|...+...|-+.|
T Consensus 545 rf~V~D~D~~~~ddfiGq~~lPv~~Lr~Gy-------R~VpL~~~~G~~l~~a~Llv~f 596 (599)
T PLN02952 545 RIEVREYDMSEKDDFGGQTCLPVSELRPGI-------RSVPLHDKKGEKLKNVRLLMRF 596 (599)
T ss_pred EEEEEecCCCCCCCeEEEEEcchhHhcCCc-------eeEeCcCCCCCCCCCEEEEEEE
Confidence 99999998 457999999999999997764 5789987778776766666665
No 106
>KOG2059 consensus Ras GTPase-activating protein [Signal transduction mechanisms]
Probab=99.29 E-value=9.3e-12 Score=122.35 Aligned_cols=125 Identities=19% Similarity=0.272 Sum_probs=105.9
Q ss_pred cEEEEEEEeeeCCCCCCCCCCCCCeEEEEEECCcCeEEeEeecCCCCCCeeceEEEEEecCCCccCCCcEEEEEEEecCC
Q 047341 4 QILEIILISAQGLKSPSSKMRRMQTYALVWIDSSTKLCTRVDRAGAESPIWNEKFLFKVTPEFLSSETSAISVEIYASGY 83 (254)
Q Consensus 4 g~L~V~VisA~~L~~~~d~~G~~DPYV~V~l~~~~k~rTkv~k~gt~NP~WNE~f~F~v~~~~l~~~~~~L~veV~D~d~ 83 (254)
..|.|.|..|++|+.. +..|..||||+|.++.....||.++.+ ++.|.|.|.|+|.++.. -..|.|-|||+|.
T Consensus 5 ~sl~vki~E~knL~~~-~~~g~~D~yC~v~lD~E~v~RT~tv~k-sL~PF~gEe~~~~iP~~-----F~~l~fYv~D~d~ 77 (800)
T KOG2059|consen 5 QSLKVKIGEAKNLPSY-GPSGMRDCYCTVNLDQEEVCRTATVEK-SLCPFFGEEFYFEIPRT-----FRYLSFYVWDRDL 77 (800)
T ss_pred cceeEEEeecccCCCC-CCCCCcCcceEEeecchhhhhhhhhhh-hcCCccccceEEecCcc-----eeeEEEEEecccc
Confidence 4589999999999998 889999999999999877889998865 99999999999999984 5899999999998
Q ss_pred CCCceeEEEEEeCccccccCCCCCCeeEEEEeeCCCCCcceEEEEEEEEEeCCC
Q 047341 84 LRDYLIGTVRFLVSNISLSVATKTPSFTAFQIRRPSGRFQGVLSIGSMLIDGSD 137 (254)
Q Consensus 84 ~~D~~LG~~~IpL~~l~~~~~~~~~~~~~~~L~~~~g~~~G~I~lsl~f~p~~~ 137 (254)
.+|+.||.+.|.=.+|...+. ...|..++-.+++..++|+|++++.+.+...
T Consensus 78 ~~D~~IGKvai~re~l~~~~~--~d~W~~L~~VD~dsEVQG~v~l~l~~~e~~~ 129 (800)
T KOG2059|consen 78 KRDDIIGKVAIKREDLHMYPG--KDTWFSLQPVDPDSEVQGKVHLELALTEAIQ 129 (800)
T ss_pred ccccccceeeeeHHHHhhCCC--CccceeccccCCChhhceeEEEEEEeccccC
Confidence 889999999998877765442 2234444445678889999999999988644
No 107
>KOG0169 consensus Phosphoinositide-specific phospholipase C [Signal transduction mechanisms]
Probab=99.29 E-value=2.4e-11 Score=120.61 Aligned_cols=119 Identities=24% Similarity=0.322 Sum_probs=93.9
Q ss_pred EEEEEEEeeeCCCCCCCC---CCCCCeEEEEEECCc----CeEEeEeecCCCCCCeeceEEEEEecCCCccCCCcEEEEE
Q 047341 5 ILEIILISAQGLKSPSSK---MRRMQTYALVWIDSS----TKLCTRVDRAGAESPIWNEKFLFKVTPEFLSSETSAISVE 77 (254)
Q Consensus 5 ~L~V~VisA~~L~~~~d~---~G~~DPYV~V~l~~~----~k~rTkv~k~gt~NP~WNE~f~F~v~~~~l~~~~~~L~ve 77 (254)
+|.|.|++++++....+. ...+||||.|.+-|. .+.+|+++++++-||.|+|+|.|++... +-.-|+|+
T Consensus 617 tL~IkI~sGq~~~~~~~~~~~~~~~dP~v~VeI~Gvp~D~~~~~Tk~v~~NgfnP~W~e~f~F~l~vP----ELAliRF~ 692 (746)
T KOG0169|consen 617 TLKIKIISGQGWLPDFGKTKFGEISDPDVYVEIAGVPADCAEQKTKVVKNNGFNPIWDEEFEFQLSVP----ELALIRFE 692 (746)
T ss_pred eeEEEEEecCcccCCCCCCcccccCCCCEEEEEcccccchhhhhceeeccCCcCcccCCeEEEEEecc----ceeEEEEE
Confidence 699999999976543222 246899999999753 4679997788899999999999999874 46889999
Q ss_pred EEecCC-CCCceeEEEEEeCccccccCCCCCCeeEEEEeeCCCCCc--ceEEEEEEEEEe
Q 047341 78 IYASGY-LRDYLIGTVRFLVSNISLSVATKTPSFTAFQIRRPSGRF--QGVLSIGSMLID 134 (254)
Q Consensus 78 V~D~d~-~~D~~LG~~~IpL~~l~~~~~~~~~~~~~~~L~~~~g~~--~G~I~lsl~f~p 134 (254)
|+|+|. .+|+|+|+..+|+..|..+. +..+|.+..|.. .-+|.+.+.+.+
T Consensus 693 V~d~d~~~~ddF~GQ~tlP~~~L~~Gy-------RhVpL~~~~G~~~~~asLfv~i~~~~ 745 (746)
T KOG0169|consen 693 VHDYDYIGKDDFIGQTTLPVSELRQGY-------RHVPLLSREGEALSSASLFVRIAIVE 745 (746)
T ss_pred EEecCCCCcccccceeeccHHHhhCce-------eeeeecCCCCccccceeEEEEEEEec
Confidence 999994 56999999999999997764 677888766643 456777776653
No 108
>PLN02230 phosphoinositide phospholipase C 4
Probab=99.27 E-value=3.9e-11 Score=118.40 Aligned_cols=117 Identities=19% Similarity=0.250 Sum_probs=88.8
Q ss_pred cEEEEEEEeeeCCCCC--C---CCCCCCCeEEEEEECC----cCeEEeEeecCCCCCCeeceEEEEEecCCCccCCCcEE
Q 047341 4 QILEIILISAQGLKSP--S---SKMRRMQTYALVWIDS----STKLCTRVDRAGAESPIWNEKFLFKVTPEFLSSETSAI 74 (254)
Q Consensus 4 g~L~V~VisA~~L~~~--~---d~~G~~DPYV~V~l~~----~~k~rTkv~k~gt~NP~WNE~f~F~v~~~~l~~~~~~L 74 (254)
.+|.|+|++++++... . +....+||||+|.|.+ ..+.+|++.. ++.||+|||+|.|++.-. +-..|
T Consensus 469 ~~L~V~VisGq~~~l~~~k~~~~~~s~~DpyV~Vei~Gvp~D~~~~kT~v~~-n~~nP~Wneef~F~l~vP----ELAll 543 (598)
T PLN02230 469 KTLKVKVCMGDGWLLDFKKTHFDSYSPPDFFVRVGIAGAPVDEVMEKTKIEY-DTWTPIWNKEFIFPLAVP----ELALL 543 (598)
T ss_pred cEEEEEEEEccCccCCCccccCCCCCCCCceEEEEEEECCCCCcccceeccC-CCCCCccCCeeEEEEEcC----ceeEE
Confidence 5799999999986421 0 2223579999999964 2456888765 489999999999997653 46889
Q ss_pred EEEEEecCC-CCCceeEEEEEeCccccccCCCCCCeeEEEEeeCCCCCc--ceEEEEEEEE
Q 047341 75 SVEIYASGY-LRDYLIGTVRFLVSNISLSVATKTPSFTAFQIRRPSGRF--QGVLSIGSML 132 (254)
Q Consensus 75 ~veV~D~d~-~~D~~LG~~~IpL~~l~~~~~~~~~~~~~~~L~~~~g~~--~G~I~lsl~f 132 (254)
+|+|+|++. .+|+|||+..||+..|..+. +..+|++.+|.. .-.|.+.+.|
T Consensus 544 Rf~V~d~d~~~~ddfiGQ~~lPv~~Lr~Gy-------R~V~L~~~~G~~l~~~~Ll~~f~~ 597 (598)
T PLN02230 544 RVEVHEHDINEKDDFGGQTCLPVSEIRQGI-------HAVPLFNRKGVKYSSTRLLMRFEF 597 (598)
T ss_pred EEEEEECCCCCCCCEEEEEEcchHHhhCcc-------ceEeccCCCcCCCCCCeeEEEEEe
Confidence 999999994 68999999999999997764 567888776643 2355555554
No 109
>cd08689 C2_fungal_Pkc1p C2 domain found in protein kinase C (Pkc1p) in Saccharomyces cerevisiae. This family is named after the protein kinase C in Saccharomyces cerevisiae, Pkc1p. Protein kinase C is a member of a family of Ser/Thr phosphotransferases that are involved in many cellular signaling pathways. PKC has two antiparallel coiled-coiled regions (ACC finger domain) (AKA PKC homology region 1 (HR1)/ Rho binding domain) upstream of the C2 domain and two C1 domains downstream. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains, like those of PKC, are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that
Probab=99.26 E-value=1.7e-11 Score=95.85 Aligned_cols=86 Identities=22% Similarity=0.336 Sum_probs=74.3
Q ss_pred EEEEEEeeeCCCCCCC---CCCCCCeEEEEEECCcCeEEeEeecCCCCCCeeceEEEEEecCCCccCCCcEEEEEEEecC
Q 047341 6 LEIILISAQGLKSPSS---KMRRMQTYALVWIDSSTKLCTRVDRAGAESPIWNEKFLFKVTPEFLSSETSAISVEIYASG 82 (254)
Q Consensus 6 L~V~VisA~~L~~~~d---~~G~~DPYV~V~l~~~~k~rTkv~k~gt~NP~WNE~f~F~v~~~~l~~~~~~L~veV~D~d 82 (254)
|.|+|.+|+|+... . ..+++||||.|.++...++||++ +.||.|||.|.|+|.. ...+.|.|||+.
T Consensus 1 L~I~V~~~RdvdH~-~~~~~~~~~etyV~IKved~~kaRTr~----srnd~WnE~F~i~Vdk------~nEiel~VyDk~ 69 (109)
T cd08689 1 LTITITSARDVDHI-ASPRFSKRPETYVSIKVEDVERARTKP----SRNDRWNEDFEIPVEK------NNEEEVIVYDKG 69 (109)
T ss_pred CEEEEEEEecCccc-cchhhccCCCcEEEEEECCEEEEeccC----CCCCcccceEEEEecC------CcEEEEEEEeCC
Confidence 68999999999887 5 56789999999999888889976 5899999999999953 789999999997
Q ss_pred CCCCceeEEEEEeCcccccc
Q 047341 83 YLRDYLIGTVRFLVSNISLS 102 (254)
Q Consensus 83 ~~~D~~LG~~~IpL~~l~~~ 102 (254)
....-.||...|+|++|...
T Consensus 70 ~~~~~Pi~llW~~~sdi~Ee 89 (109)
T cd08689 70 GDQPVPVGLLWLRLSDIAEE 89 (109)
T ss_pred CCeecceeeehhhHHHHHHH
Confidence 65667899999999988643
No 110
>PLN02228 Phosphoinositide phospholipase C
Probab=99.26 E-value=7.9e-11 Score=115.71 Aligned_cols=120 Identities=14% Similarity=0.226 Sum_probs=93.9
Q ss_pred cEEEEEEEeeeCCCC---CC--CCCCCCCeEEEEEECCc----CeEEeEeecCCCCCCee-ceEEEEEecCCCccCCCcE
Q 047341 4 QILEIILISAQGLKS---PS--SKMRRMQTYALVWIDSS----TKLCTRVDRAGAESPIW-NEKFLFKVTPEFLSSETSA 73 (254)
Q Consensus 4 g~L~V~VisA~~L~~---~~--d~~G~~DPYV~V~l~~~----~k~rTkv~k~gt~NP~W-NE~f~F~v~~~~l~~~~~~ 73 (254)
..|.|+|++|++|.- .. +....+||||+|.+.+. .+.+|+++++ +.||+| ||+|.|.+... +-..
T Consensus 431 ~~L~I~ViSGq~l~lp~~~~~~~~~~~~DpyV~Vei~G~p~D~~~~rTk~~~n-~~nP~W~~e~f~F~~~~p----ELA~ 505 (567)
T PLN02228 431 TTLKVKIYTGEGWDLDFHLTHFDQYSPPDFFVKIGIAGVPRDTVSYRTETAVD-QWFPIWGNDEFLFQLRVP----ELAL 505 (567)
T ss_pred ceEEEEEEECCccCCCCCCCCCCCCCCCCcEEEEEEEecCCCCCcceeeccCC-CCCceECCCeEEEEEEcC----ceeE
Confidence 369999999998731 10 12234899999999642 4679998865 689999 99999998653 4578
Q ss_pred EEEEEEecC-CCCCceeEEEEEeCccccccCCCCCCeeEEEEeeCCCCCc--ceEEEEEEEEEeC
Q 047341 74 ISVEIYASG-YLRDYLIGTVRFLVSNISLSVATKTPSFTAFQIRRPSGRF--QGVLSIGSMLIDG 135 (254)
Q Consensus 74 L~veV~D~d-~~~D~~LG~~~IpL~~l~~~~~~~~~~~~~~~L~~~~g~~--~G~I~lsl~f~p~ 135 (254)
|.|.|+|++ ..+|+|||++.||+..|..+ .+..+|.+..|.. ..+|.+.+.+.+.
T Consensus 506 lRf~V~D~d~~~~d~figq~~lPv~~Lr~G-------YR~VpL~~~~G~~l~~atLfv~~~~~~~ 563 (567)
T PLN02228 506 LWFKVQDYDNDTQNDFAGQTCLPLPELKSG-------VRAVRLHDRAGKAYKNTRLLVSFALDPP 563 (567)
T ss_pred EEEEEEeCCCCCCCCEEEEEEcchhHhhCC-------eeEEEccCCCCCCCCCeEEEEEEEEcCc
Confidence 999999998 56799999999999998765 3677888877753 5678888888765
No 111
>PLN02222 phosphoinositide phospholipase C 2
Probab=99.23 E-value=1.5e-10 Score=114.00 Aligned_cols=117 Identities=19% Similarity=0.217 Sum_probs=88.4
Q ss_pred cEEEEEEEeeeCCC--CCC---CCCCCCCeEEEEEECC----cCeEEeEeecCCCCCCeeceEEEEEecCCCccCCCcEE
Q 047341 4 QILEIILISAQGLK--SPS---SKMRRMQTYALVWIDS----STKLCTRVDRAGAESPIWNEKFLFKVTPEFLSSETSAI 74 (254)
Q Consensus 4 g~L~V~VisA~~L~--~~~---d~~G~~DPYV~V~l~~----~~k~rTkv~k~gt~NP~WNE~f~F~v~~~~l~~~~~~L 74 (254)
.+|.|+|++++++. ... +....+||||+|.|.| ..+.+|+++.+ +.||+|||+|.|.+.-. +-..|
T Consensus 452 ~~L~V~Visgq~~~l~~~~~~~~~~~~~dpyV~Vei~G~p~D~~~~rTk~v~n-n~nP~W~e~f~F~i~~P----eLAll 526 (581)
T PLN02222 452 TTLRVTIYMGEGWYFDFRHTHFDQYSPPDFYTRVGIAGVPGDTVMKKTKTLED-NWIPAWDEVFEFPLTVP----ELALL 526 (581)
T ss_pred ceEEEEEEEcccccCCCCccccCCCCCCCeeEEEEEeccCCCcceeeeEecCC-CCCcccCCeeEEEEEcC----ceeEE
Confidence 47999999998742 111 1234679999999964 24679999876 58999999999997652 46889
Q ss_pred EEEEEecC-CCCCceeEEEEEeCccccccCCCCCCeeEEEEeeCCCCCc--ceEEEEEEEE
Q 047341 75 SVEIYASG-YLRDYLIGTVRFLVSNISLSVATKTPSFTAFQIRRPSGRF--QGVLSIGSML 132 (254)
Q Consensus 75 ~veV~D~d-~~~D~~LG~~~IpL~~l~~~~~~~~~~~~~~~L~~~~g~~--~G~I~lsl~f 132 (254)
+|+|+|+| ..+|+|||++.||+..|..+. +..+|++..|.. .-.|.+.+.|
T Consensus 527 Rf~V~d~D~~~~ddfigq~~lPv~~Lr~Gy-------R~V~L~~~~g~~l~~a~Lfv~~~~ 580 (581)
T PLN02222 527 RLEVHEYDMSEKDDFGGQTCLPVWELSQGI-------RAFPLHSRKGEKYKSVKLLVKVEF 580 (581)
T ss_pred EEEEEECCCCCCCcEEEEEEcchhhhhCcc-------ceEEccCCCcCCCCCeeEEEEEEe
Confidence 99999998 457999999999999987664 577888776643 3355555554
No 112
>KOG1028 consensus Ca2+-dependent phospholipid-binding protein Synaptotagmin, required for synaptic vesicle and secretory granule exocytosis [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.18 E-value=9.7e-11 Score=112.07 Aligned_cols=92 Identities=25% Similarity=0.360 Sum_probs=77.1
Q ss_pred ccEEEEEEEeeeCCCCCCCCCCCCCeEEEEEECCc----CeEEeEeecCCCCCCeeceEEEEEecCCCccCCCcEEEEEE
Q 047341 3 TQILEIILISAQGLKSPSSKMRRMQTYALVWIDSS----TKLCTRVDRAGAESPIWNEKFLFKVTPEFLSSETSAISVEI 78 (254)
Q Consensus 3 ~g~L~V~VisA~~L~~~~d~~G~~DPYV~V~l~~~----~k~rTkv~k~gt~NP~WNE~f~F~v~~~~l~~~~~~L~veV 78 (254)
.+.|.|.|++|++|+.. +..+..||||++.+-.. .+.+|.+.+. ++||+|||+|.|.|+.+.+ ....|.|+|
T Consensus 297 ~g~ltv~v~kar~L~~~-~~~~~~d~~Vk~~l~~~~~~~~kkkT~~~~~-~~npv~nesf~F~vp~~~l--~~~~l~l~V 372 (421)
T KOG1028|consen 297 AGRLTVVVIKARNLKSM-DVGGLSDPYVKVTLLDGDKRLSKKKTSVKKK-TLNPVFNETFVFDVPPEQL--AEVSLELTV 372 (421)
T ss_pred CCeEEEEEEEecCCCcc-cCCCCCCccEEEEEecCCceeeeeeeecccC-CCCCcccccEEEeCCHHHh--heeEEEEEE
Confidence 47899999999999998 78899999999999532 4668877764 9999999999999987544 567899999
Q ss_pred EecC-CCCCceeEEEEEeCcc
Q 047341 79 YASG-YLRDYLIGTVRFLVSN 98 (254)
Q Consensus 79 ~D~d-~~~D~~LG~~~IpL~~ 98 (254)
||++ ..++++||.+.+....
T Consensus 373 ~d~d~~~~~~~iG~~~lG~~~ 393 (421)
T KOG1028|consen 373 WDHDTLGSNDLIGRCILGSDS 393 (421)
T ss_pred EEcccccccceeeEEEecCCC
Confidence 9999 5567799988887654
No 113
>KOG1328 consensus Synaptic vesicle protein BAIAP3, involved in vesicle priming/regulation [Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms]
Probab=99.00 E-value=1.2e-10 Score=114.86 Aligned_cols=96 Identities=18% Similarity=0.264 Sum_probs=83.0
Q ss_pred cEEEEEEEeeeCCCCCCCCCCCCCeEEEEEECCcC------eEEeEeecCCCCCCeeceEEEEEecCCCccCCCcEEEEE
Q 047341 4 QILEIILISAQGLKSPSSKMRRMQTYALVWIDSST------KLCTRVDRAGAESPIWNEKFLFKVTPEFLSSETSAISVE 77 (254)
Q Consensus 4 g~L~V~VisA~~L~~~~d~~G~~DPYV~V~l~~~~------k~rTkv~k~gt~NP~WNE~f~F~v~~~~l~~~~~~L~ve 77 (254)
.+|.|.|+.|+++.+. |.+|-+||||+|.+.|.. ..+|+|++. ++||+|+|.|+|.|+.+...-+...|.|.
T Consensus 947 q~L~veVlhA~diipL-D~NGlSDPFVviEl~P~~~fp~v~~q~T~V~~r-tLnPVfDE~FeFsVp~e~c~te~Am~~FT 1024 (1103)
T KOG1328|consen 947 QTLVVEVLHAKDIIPL-DSNGLSDPFVVIELIPKFRFPAVPVQKTKVVSR-TLNPVFDETFEFSVPPEPCSTETAMLHFT 1024 (1103)
T ss_pred cchhhhhhcccccccc-CCCCCCCCeEEEEeccccccccchhhhhhhhhc-cccchhhhheeeecCccccccccceEEEE
Confidence 4678899999999999 999999999999998752 358999876 99999999999999987655557789999
Q ss_pred EEecCC-CCCceeEEEEEeCccccc
Q 047341 78 IYASGY-LRDYLIGTVRFLVSNISL 101 (254)
Q Consensus 78 V~D~d~-~~D~~LG~~~IpL~~l~~ 101 (254)
|||+|. ..++|-|++.+.|+++..
T Consensus 1025 VMDHD~L~sNDFaGEA~L~Lg~vpG 1049 (1103)
T KOG1328|consen 1025 VMDHDYLRSNDFAGEAFLELGDVPG 1049 (1103)
T ss_pred eeccceecccccchHHHHhhCCCCC
Confidence 999994 468999999999988753
No 114
>KOG1264 consensus Phospholipase C [Lipid transport and metabolism]
Probab=98.98 E-value=2.8e-09 Score=106.51 Aligned_cols=101 Identities=21% Similarity=0.334 Sum_probs=80.4
Q ss_pred cEEEEEEEeeeCCCCCCCCCCCCCeEEEEEECCc----CeEEeEeecCCCCCCeec-eEEEEEecCCCccCCCcEEEEEE
Q 047341 4 QILEIILISAQGLKSPSSKMRRMQTYALVWIDSS----TKLCTRVDRAGAESPIWN-EKFLFKVTPEFLSSETSAISVEI 78 (254)
Q Consensus 4 g~L~V~VisA~~L~~~~d~~G~~DPYV~V~l~~~----~k~rTkv~k~gt~NP~WN-E~f~F~v~~~~l~~~~~~L~veV 78 (254)
-+|.|.|+.|+.|+.. ..|...|||.|.+-|. .+++|.++.++|+||+|| |+|+|.|... +-..|+|.|
T Consensus 1065 ~~lsv~vigaRHL~k~--gr~i~cPfVevEiiGa~~Dt~~~~t~~V~dNGlnPiWn~e~ftFeI~nP----e~A~lRF~V 1138 (1267)
T KOG1264|consen 1065 MTLSVKVLGARHLPKL--GRSIACPFVEVEIIGAEYDTNKFKTTVVNDNGLNPIWNPEKFTFEIYNP----EFAFLRFVV 1138 (1267)
T ss_pred eEEEEEEeeccccccC--CCCccCCcEEEEEeccccCCCceEEEEeccCCCCCCCCCcceEEEeeCC----ceEEEEEEE
Confidence 4688999999999965 2355679999999652 455666666779999999 9999999874 468899999
Q ss_pred EecCCCC-CceeEEEEEeCccccccCCCCCCeeEEEEeeC
Q 047341 79 YASGYLR-DYLIGTVRFLVSNISLSVATKTPSFTAFQIRR 117 (254)
Q Consensus 79 ~D~d~~~-D~~LG~~~IpL~~l~~~~~~~~~~~~~~~L~~ 117 (254)
+|.|+.+ ..|||++.+|+..+..+ .++.+|++
T Consensus 1139 ~eeDmfs~~~FiaqA~yPv~~ik~G-------fRsVpLkN 1171 (1267)
T KOG1264|consen 1139 YEEDMFSDPNFLAQATYPVKAIKSG-------FRSVPLKN 1171 (1267)
T ss_pred ecccccCCcceeeeeecchhhhhcc-------ceeeeccc
Confidence 9999655 46999999999988655 35677764
No 115
>KOG1328 consensus Synaptic vesicle protein BAIAP3, involved in vesicle priming/regulation [Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms]
Probab=98.93 E-value=1.6e-10 Score=114.19 Aligned_cols=124 Identities=20% Similarity=0.314 Sum_probs=94.6
Q ss_pred EEEEEEeeeCCCCCCCCCCCCCeEEEEEECCcCe------------------------------EEeEeecCCCCCCeec
Q 047341 6 LEIILISAQGLKSPSSKMRRMQTYALVWIDSSTK------------------------------LCTRVDRAGAESPIWN 55 (254)
Q Consensus 6 L~V~VisA~~L~~~~d~~G~~DPYV~V~l~~~~k------------------------------~rTkv~k~gt~NP~WN 55 (254)
|.|.+..|+||.+. +.+|-+|||+...+-+..+ .-|.|.+ .|+||.|+
T Consensus 116 l~is~~~ak~l~ak-d~ngfSdP~~m~g~~p~~~~~~~pra~~eqrdgl~~~~~~~GpiPAKlIkatsvk~-~TLnPkW~ 193 (1103)
T KOG1328|consen 116 LNISLLEAKDLIAK-DVNGFSDPFAMMGVVPGTRKENSPRALHEQRDGLMHRFQDTGPIPAKLIKATSVKK-KTLNPKWS 193 (1103)
T ss_pred HHHHHHHhcCcccc-CCCCCCChhhhhccccccccccChhhhhhhhhhhhhccccCCCCcHHHhhhccccc-ccCCcchh
Confidence 44566789999988 8999999999988854210 1244444 59999999
Q ss_pred eEEEEEecCCCccCCCcEEEEEEEecCC----------------------------------C---CCceeEEEEEeCcc
Q 047341 56 EKFLFKVTPEFLSSETSAISVEIYASGY----------------------------------L---RDYLIGTVRFLVSN 98 (254)
Q Consensus 56 E~f~F~v~~~~l~~~~~~L~veV~D~d~----------------------------------~---~D~~LG~~~IpL~~ 98 (254)
|+|.|.|.+- ....+++.|||+|. + .|+|||.+.|||.+
T Consensus 194 EkF~F~IeDv----~tDqfHlDIWDHDDe~sv~dAvs~LNeV~G~kG~GRyFKqv~qSARans~d~tDDFLGciNipl~E 269 (1103)
T KOG1328|consen 194 EKFQFTIEDV----QTDQFHLDIWDHDDEESVLDAVSSLNEVTGFKGIGRYFKQVTQSARANSDDCTDDFLGCINIPLAE 269 (1103)
T ss_pred hheeeehhcc----ccceeeeecccCCccHHHHHHHHHHhhhhcchhHHHHHHHHHHHHhcCCCccccccccccccchhc
Confidence 9999999872 68899999999872 1 28999999999999
Q ss_pred ccccCCCCCCeeEEEEee--CCCCCcceEEEEEEEEEeCCCCCC
Q 047341 99 ISLSVATKTPSFTAFQIR--RPSGRFQGVLSIGSMLIDGSDLPA 140 (254)
Q Consensus 99 l~~~~~~~~~~~~~~~L~--~~~g~~~G~I~lsl~f~p~~~~p~ 140 (254)
+...+- ..|+.|. ..+.+++|.+++.+++.....-.+
T Consensus 270 iP~~Gl-----d~WFkLepRS~~S~VqG~~~LklwLsT~e~~~a 308 (1103)
T KOG1328|consen 270 IPPDGL-----DQWFKLEPRSDKSKVQGQVKLKLWLSTKEEGRA 308 (1103)
T ss_pred CCcchH-----HHHhccCcccccccccceEEEEEEEeeeccccc
Confidence 987654 2466664 335689999999999987654333
No 116
>PLN02352 phospholipase D epsilon
Probab=98.92 E-value=1e-08 Score=103.39 Aligned_cols=122 Identities=16% Similarity=0.179 Sum_probs=92.7
Q ss_pred ccEEEEEEEeeeCCCCCC---CCC-CCCCeEEEEEECCcCeEEeEeecCCCCCCeeceEEEEEecCCCccCCC-cEEEEE
Q 047341 3 TQILEIILISAQGLKSPS---SKM-RRMQTYALVWIDSSTKLCTRVDRAGAESPIWNEKFLFKVTPEFLSSET-SAISVE 77 (254)
Q Consensus 3 ~g~L~V~VisA~~L~~~~---d~~-G~~DPYV~V~l~~~~k~rTkv~k~gt~NP~WNE~f~F~v~~~~l~~~~-~~L~ve 77 (254)
-|+|+++|..|+-+...- +.. ...||||+|.+.+....|| . +..||.|||.|.+++.- .. ..|.|.
T Consensus 9 hg~l~~~i~~~~~~~~~~~~~~~~~~~~~~y~tv~~~~~~v~rt---~-~~~~p~w~e~f~i~~ah-----~~~~~~~f~ 79 (758)
T PLN02352 9 HGTLEATIFDATPYTPPFPFNCIFLNGKATYVTIKIGNKKVAKT---S-HEYDRVWNQTFQILCAH-----PLDSTITIT 79 (758)
T ss_pred ccceEEEEEEeeehhhcccccccccCCCCceEEEEeCCcEEecC---C-CCCCCccccceeEEeee-----ecCCcEEEE
Confidence 478999999998543320 111 1239999999988766788 2 35699999999999974 24 579999
Q ss_pred EEecCCCCCceeEEEEEeCccccccCCCCCCeeEEEEeeCCCCCc-ce-EEEEEEEEEeCCCCCC
Q 047341 78 IYASGYLRDYLIGTVRFLVSNISLSVATKTPSFTAFQIRRPSGRF-QG-VLSIGSMLIDGSDLPA 140 (254)
Q Consensus 78 V~D~d~~~D~~LG~~~IpL~~l~~~~~~~~~~~~~~~L~~~~g~~-~G-~I~lsl~f~p~~~~p~ 140 (254)
|.| +-.+||.+.||+.++..+.. ....|+++...+|++ .| .|++++.|.|....|.
T Consensus 80 vk~----~~~~ig~~~~p~~~~~~g~~---~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~ 137 (758)
T PLN02352 80 LKT----KCSILGRFHIQAHQIVTEAS---FINGFFPLIMENGKPNPELKLRFMLWFRPAELEPT 137 (758)
T ss_pred Eec----CCeEEEEEEEEHHHhhCCCc---ccceEEEcccCCCCCCCCCEEEEEEEEEEhhhCcc
Confidence 998 57899999999999987643 135789998776654 44 9999999999876543
No 117
>KOG1031 consensus Predicted Ca2+-dependent phospholipid-binding protein [General function prediction only]
Probab=98.80 E-value=1.5e-08 Score=98.53 Aligned_cols=124 Identities=19% Similarity=0.225 Sum_probs=99.1
Q ss_pred cEEEEEEEeeeCCCCCCCCC-CCCCeEEEEEECCcCeEEeEeecCCCCCCeece-EEEEEecCCCccCCCcEEEEEEEec
Q 047341 4 QILEIILISAQGLKSPSSKM-RRMQTYALVWIDSSTKLCTRVDRAGAESPIWNE-KFLFKVTPEFLSSETSAISVEIYAS 81 (254)
Q Consensus 4 g~L~V~VisA~~L~~~~d~~-G~~DPYV~V~l~~~~k~rTkv~k~gt~NP~WNE-~f~F~v~~~~l~~~~~~L~veV~D~ 81 (254)
|.|-|.|..|++|+.+ |.. ...|.||.|.+... .++|.|..+ ++||.||. -|.|.|++..+ +...|.|.++|+
T Consensus 3 gkl~vki~a~r~lpvm-dkasd~tdafveik~~n~-t~ktdvf~k-slnp~wnsdwfkfevddadl--qdeplqi~lld~ 77 (1169)
T KOG1031|consen 3 GKLGVKIKAARHLPVM-DKASDLTDAFVEIKFANT-TFKTDVFLK-SLNPQWNSDWFKFEVDDADL--QDEPLQIRLLDH 77 (1169)
T ss_pred CcceeEEEeccCCccc-ccccccchheeEEEeccc-ceehhhhhh-hcCCcccccceEEecChhhh--ccCCeeEEEecc
Confidence 6789999999999998 543 46899999999744 579999876 89999995 69999998665 678899999999
Q ss_pred C-CCCCceeEEEEEeCccccccCC------CCCCeeEEEEeeCCCCCcceEEEEEEEE
Q 047341 82 G-YLRDYLIGTVRFLVSNISLSVA------TKTPSFTAFQIRRPSGRFQGVLSIGSML 132 (254)
Q Consensus 82 d-~~~D~~LG~~~IpL~~l~~~~~------~~~~~~~~~~L~~~~g~~~G~I~lsl~f 132 (254)
+ ...++-||.+.|.++-+..... .+..-..|+++.+.-...+|+|++-+..
T Consensus 78 dtysandaigkv~i~idpl~~e~aaqavhgkgtvisgw~pifdtihgirgeinvivkv 135 (1169)
T KOG1031|consen 78 DTYSANDAIGKVNIDIDPLCLEEAAQAVHGKGTVISGWFPIFDTIHGIRGEINVIVKV 135 (1169)
T ss_pred cccccccccceeeeccChHHHHhHHhhhcCCceEEeeeeecceecccccceeEEEEEE
Confidence 9 6679999999999987654332 1233457888876545679999988764
No 118
>KOG1013 consensus Synaptic vesicle protein rabphilin-3A [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.79 E-value=1.1e-09 Score=100.20 Aligned_cols=177 Identities=16% Similarity=0.184 Sum_probs=119.2
Q ss_pred ccEEEEEEEeeeCCCCCCCCCCCCCeEEEEEECCc----CeEEeEeecCCCCCCeeceEEEEE--ecCCCccCCCcEEEE
Q 047341 3 TQILEIILISAQGLKSPSSKMRRMQTYALVWIDSS----TKLCTRVDRAGAESPIWNEKFLFK--VTPEFLSSETSAISV 76 (254)
Q Consensus 3 ~g~L~V~VisA~~L~~~~d~~G~~DPYV~V~l~~~----~k~rTkv~k~gt~NP~WNE~f~F~--v~~~~l~~~~~~L~v 76 (254)
..++..+|..|++|+++ ++.+..|||+.+.+.+. .+.+|++.. +++||.|||+.... ..+.. ....+.+
T Consensus 92 ~~~~~~tl~~a~~lk~~-~~~~~~d~~~~~~llpga~kl~slr~~t~~-n~lN~~w~etev~~~i~~~~~---~~K~~Rk 166 (362)
T KOG1013|consen 92 SRMLDTTLDRAKGLKPM-DINGLADPYVKLHLLPGAGKLNSLRTKTTR-NTLNPEWNETEVYEGITDDDT---HLKVLRK 166 (362)
T ss_pred hhhcceeechhcccchh-hhhhhcchHHhhhcccchhhhhhhhHHhhc-cCcCcceeccceecccccchh---hhhhhhe
Confidence 46788999999999999 89999999999999863 346777775 49999999875544 33321 4577888
Q ss_pred EEEecC-CCCCceeEEEEEeCccccccCCCCCCeeEEEEee--C---CCCCcceEEEEEEEEEeCCC--------CCCcc
Q 047341 77 EIYASG-YLRDYLIGTVRFLVSNISLSVATKTPSFTAFQIR--R---PSGRFQGVLSIGSMLIDGSD--------LPAFD 142 (254)
Q Consensus 77 eV~D~d-~~~D~~LG~~~IpL~~l~~~~~~~~~~~~~~~L~--~---~~g~~~G~I~lsl~f~p~~~--------~p~l~ 142 (254)
.|.|.+ +..++++|+.++++..+..........+....+- . ..-..+|.|.+++.|-.... +..+.
T Consensus 167 ~vcdn~~~~~~~sqGq~r~~lkKl~p~q~k~f~~cl~~~lp~~rad~~~~E~rg~i~isl~~~s~~~~l~vt~iRc~~l~ 246 (362)
T KOG1013|consen 167 VVCDNDKKTHNESQGQSRVSLKKLKPLQRKSFNICLEKSLPSERADRDEDEERGAILISLAYSSTTPGLIVTIIRCSHLA 246 (362)
T ss_pred eeccCcccccccCcccchhhhhccChhhcchhhhhhhccCCcccccccchhhccceeeeeccCcCCCceEEEEEEeeeee
Confidence 888887 6678999999999988876554211122222221 1 11257899999999876543 34456
Q ss_pred ccccccccccc-------cchhHHHhhhhhccccccccccCCCcccccc
Q 047341 143 EVSAIGYRDLM-------GESKRKESLMTRKSKSMADEFDAGDDESWEN 184 (254)
Q Consensus 143 ~~~~~~~~dl~-------~~~~~~~~~~~~k~~~~~~~f~~~~~~~~~~ 184 (254)
.++.++|.|+. ..+++.+++.+.|.++.--.|+..=+..-++
T Consensus 247 ssDsng~sDpyvS~~l~pdv~~~fkkKt~~~K~t~~p~fd~~~~~~i~p 295 (362)
T KOG1013|consen 247 SSDSNGYSDPYVSQRLSPDVGKKFKKKTQQKKKTLNPEFDEEFFYDIGP 295 (362)
T ss_pred ccccCCCCCccceeecCCCcchhhcccCcchhccCCccccccccccCCc
Confidence 68999999843 2334444444445555554444444433344
No 119
>KOG2059 consensus Ras GTPase-activating protein [Signal transduction mechanisms]
Probab=98.45 E-value=3.9e-07 Score=90.32 Aligned_cols=124 Identities=19% Similarity=0.294 Sum_probs=86.3
Q ss_pred EEEeeeCCCCCCCCCCCCCeEEEEEECCcC---eEEeEeecCCCCCCeeceEEEEEecCCC---------c-cC-CCcEE
Q 047341 9 ILISAQGLKSPSSKMRRMQTYALVWIDSST---KLCTRVDRAGAESPIWNEKFLFKVTPEF---------L-SS-ETSAI 74 (254)
Q Consensus 9 ~VisA~~L~~~~d~~G~~DPYV~V~l~~~~---k~rTkv~k~gt~NP~WNE~f~F~v~~~~---------l-~~-~~~~L 74 (254)
.+++++++-+. .++.+||||+|...+.. ..+|++.++ +.||.|||.|+|.+.... + .+ .-..|
T Consensus 136 ~~L~~r~~~P~--~~~~~dp~~~v~~~g~~~~~~~~T~~~kk-t~~p~~~Ev~~f~~~~~~~~s~ks~~~~~~e~~~l~i 212 (800)
T KOG2059|consen 136 HVLKTRQGLPI--INGQCDPFARVTLCGPSKLKEKKTKVKKK-TTNPQFDEVFYFEVTREESYSKKSLFMPEEEDDMLEI 212 (800)
T ss_pred hhhhhcccCce--eCCCCCcceEEeecccchhhccccceeee-ccCcchhhheeeeeccccccccchhcCcccCCceeeE
Confidence 34455565553 45679999999986542 258888876 999999999999997630 0 00 13568
Q ss_pred EEEEEecC--CCCCceeEEEEEeCccccccCCCCCCeeEEEEeeC-CC------CCcceEEEEEEEEEeCCCCC
Q 047341 75 SVEIYASG--YLRDYLIGTVRFLVSNISLSVATKTPSFTAFQIRR-PS------GRFQGVLSIGSMLIDGSDLP 139 (254)
Q Consensus 75 ~veV~D~d--~~~D~~LG~~~IpL~~l~~~~~~~~~~~~~~~L~~-~~------g~~~G~I~lsl~f~p~~~~p 139 (254)
.+++|+.. ...+.|+|++++|+..+..... ...||.|.. ++ +.--|.+++.+.|......|
T Consensus 213 rv~lW~~~~~~~~~~FlGevrv~v~~~~~~s~----p~~W~~Lqp~~~g~~~~~~~~lGslrl~v~y~~D~Vlp 282 (800)
T KOG2059|consen 213 RVDLWNDLNLVINDVFLGEVRVPVDVLRQKSS----PAAWYYLQPRPNGEKSSDGGDLGSLRLNVTYTEDHVLP 282 (800)
T ss_pred EEeeccchhhhhhhhhceeEEeehhhhhhccC----ccceEEEecCCCcccCCCCCCccceeeeEEeeeceecc
Confidence 88999844 4469999999999988763322 235777753 22 34579999999998764433
No 120
>KOG1265 consensus Phospholipase C [Lipid transport and metabolism]
Probab=98.34 E-value=2.6e-06 Score=86.29 Aligned_cols=102 Identities=23% Similarity=0.354 Sum_probs=80.3
Q ss_pred ccEEEEEEEeeeCCCCCCCCCCCCCeEEEEEECCc------CeEEeEeecCCCCCCeece-EEEEE--ecCCCccCCCcE
Q 047341 3 TQILEIILISAQGLKSPSSKMRRMQTYALVWIDSS------TKLCTRVDRAGAESPIWNE-KFLFK--VTPEFLSSETSA 73 (254)
Q Consensus 3 ~g~L~V~VisA~~L~~~~d~~G~~DPYV~V~l~~~------~k~rTkv~k~gt~NP~WNE-~f~F~--v~~~~l~~~~~~ 73 (254)
..+|.|+|++++-|... ++..||.|.+-+- ..+||++..+++.||+||| .|.|. |-+ +-..
T Consensus 702 A~t~sV~VISgqFLSdr-----kvgtyVEVdmfgLP~Dt~Rk~~rtrt~~~n~~npvy~eepfvF~KVvLp-----eLA~ 771 (1189)
T KOG1265|consen 702 AATLSVTVISGQFLSDR-----KVGTYVEVDMFGLPTDTIRKEFRTRTVQGNSFNPVYEEEPFVFRKVVLP-----ELAS 771 (1189)
T ss_pred EeeEEEEEEeeeecccc-----ccCceEEEEecCCCchhhhhhhhhccccCCCCCcccccCCcccceeccc-----chhh
Confidence 36799999999999876 2569999999642 4578999888999999997 58886 322 4689
Q ss_pred EEEEEEecCCCCCceeEEEEEeCccccccCCCCCCeeEEEEeeCCCCCcce
Q 047341 74 ISVEIYASGYLRDYLIGTVRFLVSNISLSVATKTPSFTAFQIRRPSGRFQG 124 (254)
Q Consensus 74 L~veV~D~d~~~D~~LG~~~IpL~~l~~~~~~~~~~~~~~~L~~~~g~~~G 124 (254)
|.|.||++ +.+|||+--+|+..+..+. +...|+.+.+.+-+
T Consensus 772 lRiavyeE---ggK~ig~RIlpvd~l~~GY-------rhv~LRse~Nqpl~ 812 (1189)
T KOG1265|consen 772 LRIAVYEE---GGKFIGQRILPVDGLNAGY-------RHVCLRSESNQPLT 812 (1189)
T ss_pred eeeeeecc---CCceeeeeccchhcccCcc-------eeEEecCCCCCccc
Confidence 99999986 4689999999999887664 45677776665544
No 121
>KOG0905 consensus Phosphoinositide 3-kinase [Signal transduction mechanisms]
Probab=98.21 E-value=1.2e-06 Score=90.77 Aligned_cols=106 Identities=21% Similarity=0.388 Sum_probs=83.4
Q ss_pred ccEEEEEEEeeeCCCCCCCCCCCCCeEEEEEECCc----CeEEeEeecCCCCCCeeceEEEEE-ecCCCccCCCcEEEEE
Q 047341 3 TQILEIILISAQGLKSPSSKMRRMQTYALVWIDSS----TKLCTRVDRAGAESPIWNEKFLFK-VTPEFLSSETSAISVE 77 (254)
Q Consensus 3 ~g~L~V~VisA~~L~~~~d~~G~~DPYV~V~l~~~----~k~rTkv~k~gt~NP~WNE~f~F~-v~~~~l~~~~~~L~ve 77 (254)
.++|.|.|..|++|.-. .-....||||+..+.|. .|.||+|+++ +.||+|||.+.+. .+-+.+ ....|.+.
T Consensus 1523 ~~~LtImV~H~K~L~~L-qdg~~P~pyVK~YLlPdp~k~sKRKTKvvrk-t~~PTfnE~LvY~g~p~~~l--~qReLQ~s 1598 (1639)
T KOG0905|consen 1523 NGTLTIMVMHAKGLALL-QDGQDPDPYVKTYLLPDPRKTSKRKTKVVRK-TRNPTFNEMLVYDGFPKEIL--QQRELQVS 1598 (1639)
T ss_pred CceEEEEhhhhcccccc-cCCCCCCcceeEEecCCchHhhhhhhccccc-cCCCchhhheeecCCchhhh--hhheeeee
Confidence 47899999999999765 34557899999999763 4679999986 9999999988766 333222 46899999
Q ss_pred EEecC-CCCCceeEEEEEeCccccccCCCCCCeeEEEEee
Q 047341 78 IYASG-YLRDYLIGTVRFLVSNISLSVATKTPSFTAFQIR 116 (254)
Q Consensus 78 V~D~d-~~~D~~LG~~~IpL~~l~~~~~~~~~~~~~~~L~ 116 (254)
||..+ ...+.++|.+.|||.++....+ ...||+|-
T Consensus 1599 Vls~~~~~en~~lg~v~i~L~~~~l~kE----~~~Wy~lg 1634 (1639)
T KOG0905|consen 1599 VLSNGGLLENVFLGGVNIPLLKVDLLKE----SVGWYNLG 1634 (1639)
T ss_pred eecccceeeeeeeeeeecchhhcchhhh----hcceeecc
Confidence 99988 5578999999999998765443 24788874
No 122
>KOG1013 consensus Synaptic vesicle protein rabphilin-3A [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.96 E-value=1e-05 Score=74.42 Aligned_cols=87 Identities=16% Similarity=0.207 Sum_probs=72.9
Q ss_pred cEEEEEEEeeeCCCCCCCCCCCCCeEEEEEECCc----CeEEeEeecCCCCCCeeceEEEEEecCCCccCCCcEEEEEEE
Q 047341 4 QILEIILISAQGLKSPSSKMRRMQTYALVWIDSS----TKLCTRVDRAGAESPIWNEKFLFKVTPEFLSSETSAISVEIY 79 (254)
Q Consensus 4 g~L~V~VisA~~L~~~~d~~G~~DPYV~V~l~~~----~k~rTkv~k~gt~NP~WNE~f~F~v~~~~l~~~~~~L~veV~ 79 (254)
.-|.|+++.+..|... |.+|.+||||.+++.+. .+.+|++.++ ++||+||+.|.|.+.+..| ....+.|.||
T Consensus 233 ~~l~vt~iRc~~l~ss-Dsng~sDpyvS~~l~pdv~~~fkkKt~~~K~-t~~p~fd~~~~~~i~pgdL--a~~kv~lsvg 308 (362)
T KOG1013|consen 233 PGLIVTIIRCSHLASS-DSNGYSDPYVSQRLSPDVGKKFKKKTQQKKK-TLNPEFDEEFFYDIGPGDL--AYKKVALSVG 308 (362)
T ss_pred CceEEEEEEeeeeecc-ccCCCCCccceeecCCCcchhhcccCcchhc-cCCccccccccccCCccch--hcceEEEeec
Confidence 4578999999999998 89999999999999763 3568888765 9999999999999998765 5789999999
Q ss_pred ecCCC-CCceeEEEEE
Q 047341 80 ASGYL-RDYLIGTVRF 94 (254)
Q Consensus 80 D~d~~-~D~~LG~~~I 94 (254)
|.+.. ..+++|-...
T Consensus 309 d~~~G~s~d~~GG~~~ 324 (362)
T KOG1013|consen 309 DYDIGKSNDSIGGSML 324 (362)
T ss_pred ccCCCcCccCCCcccc
Confidence 99955 6788885433
No 123
>KOG1326 consensus Membrane-associated protein FER-1 and related ferlins, contain multiple C2 domains [Cell wall/membrane/envelope biogenesis]
Probab=97.90 E-value=7e-06 Score=84.14 Aligned_cols=88 Identities=14% Similarity=0.206 Sum_probs=71.3
Q ss_pred EEEEEEEeeeCCCCCCCCCCCCCeEEEEEECCcC-eEEeEeecCCCCCCeeceEEEEEecCCCccCCCcEEEEEEEecC-
Q 047341 5 ILEIILISAQGLKSPSSKMRRMQTYALVWIDSST-KLCTRVDRAGAESPIWNEKFLFKVTPEFLSSETSAISVEIYASG- 82 (254)
Q Consensus 5 ~L~V~VisA~~L~~~~d~~G~~DPYV~V~l~~~~-k~rTkv~k~gt~NP~WNE~f~F~v~~~~l~~~~~~L~veV~D~d- 82 (254)
.+||.|+.|-+|.+. |.+|..|||+.|.+++.. .-++..+. +++||++++-|.+...-. ....|.++|||+|
T Consensus 614 LvrVyvv~A~~L~p~-D~ng~adpYv~l~lGk~~~~d~~~yip-~tlnPVfgkmfel~~~lp----~ek~l~v~vyd~D~ 687 (1105)
T KOG1326|consen 614 LVRVYVVEAFSLQPS-DGNGDADPYVKLLLGKKRTLDRAHYIP-NTLNPVFGKMFELECLLP----FEKDLIVEVYDHDL 687 (1105)
T ss_pred eEEEEEEEeeecccc-CCCCCcCceeeeeeccchhhhhhhcCc-CCCCcHHHHHHHhhcccc----hhhcceeEEEEeec
Confidence 578999999999998 999999999999998642 11333344 499999999887776542 3678899999999
Q ss_pred CCCCceeEEEEEeCcc
Q 047341 83 YLRDYLIGTVRFLVSN 98 (254)
Q Consensus 83 ~~~D~~LG~~~IpL~~ 98 (254)
..+|+.||+..|.|+.
T Consensus 688 ~~~d~~iget~iDLEn 703 (1105)
T KOG1326|consen 688 EAQDEKIGETTIDLEN 703 (1105)
T ss_pred ccccchhhceehhhhh
Confidence 5579999999999875
No 124
>cd08684 C2A_Tac2-N C2 domain first repeat found in Tac2-N (Tandem C2 protein in Nucleus). Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphos
Probab=97.82 E-value=3e-05 Score=59.11 Aligned_cols=90 Identities=18% Similarity=0.232 Sum_probs=68.2
Q ss_pred EEEEEeeeCCCCCCCCCCCCCeEEE--EEECCcCeEEeEeecCCCCCCeeceEEEEEecCCCccCCCcEEEEEEEecCCC
Q 047341 7 EIILISAQGLKSPSSKMRRMQTYAL--VWIDSSTKLCTRVDRAGAESPIWNEKFLFKVTPEFLSSETSAISVEIYASGYL 84 (254)
Q Consensus 7 ~V~VisA~~L~~~~d~~G~~DPYV~--V~l~~~~k~rTkv~k~gt~NP~WNE~f~F~v~~~~l~~~~~~L~veV~D~d~~ 84 (254)
-|+|+.++||.-++.......-|++ +.+......+|.+. .|..||+|+|+|.|.+.-.. .+...|.|.|+. ...
T Consensus 2 witv~~c~d~s~~~~~~e~~~i~ikg~~tl~kpv~~KsS~r-rgs~d~~f~ETFVFqi~l~q--L~~V~L~fsv~~-~~~ 77 (103)
T cd08684 2 WITVLKCKDLSWPSSCGENPTIYIKGILTLPKPVHFKSSAK-EGSNDIEFMETFVFAIKLQN--LQTVRLVFKIQT-QTP 77 (103)
T ss_pred EEEEEEecccccccccCcCCeeEEEEEEecCCCccccchhh-cCCCChhHHHHHHHHHHHhh--ccceEEEEEeec-cCC
Confidence 3789999999866433334556775 55555567788765 46999999999999987643 367889999998 555
Q ss_pred CCceeEEEEEeCcccc
Q 047341 85 RDYLIGTVRFLVSNIS 100 (254)
Q Consensus 85 ~D~~LG~~~IpL~~l~ 100 (254)
+.+.||.+.+.++++-
T Consensus 78 RKe~iG~~sL~l~s~g 93 (103)
T cd08684 78 RKRTIGECSLSLRTLS 93 (103)
T ss_pred ccceeeEEEeecccCC
Confidence 7899999999988763
No 125
>PLN02964 phosphatidylserine decarboxylase
Probab=97.67 E-value=6.7e-05 Score=75.35 Aligned_cols=88 Identities=10% Similarity=0.212 Sum_probs=70.4
Q ss_pred ccEEEEEEEeeeCCCCCCCCCCCCCeEEEEEECCcCeEEeEeecCCCCCCeeceEEEEEecCCCccCCCcEEEEEEEecC
Q 047341 3 TQILEIILISAQGLKSPSSKMRRMQTYALVWIDSSTKLCTRVDRAGAESPIWNEKFLFKVTPEFLSSETSAISVEIYASG 82 (254)
Q Consensus 3 ~g~L~V~VisA~~L~~~~d~~G~~DPYV~V~l~~~~k~rTkv~k~gt~NP~WNE~f~F~v~~~~l~~~~~~L~veV~D~d 82 (254)
.|.+.|+|++|+ + +. .|||..+-.-+.+.+||.+.+. |+||+||+...|.|.+. +....+|.|||.+
T Consensus 53 ~~~~~~~~~~~~----~-~~---~~~~~~~~~~g~~~f~t~~~~~-~~~p~~~~~~~~~~~~~----~~~~~~~~~~~~~ 119 (644)
T PLN02964 53 SGIALLTLVGAE----M-KF---KDKWLACVSFGEQTFRTETSDS-TDKPVWNSEKKLLLEKN----GPHLARISVFETN 119 (644)
T ss_pred cCeEEEEeehhh----h-cc---CCcEEEEEEecceeeeeccccc-cCCcccchhhceEeccC----CcceEEEEEEecC
Confidence 367889999987 4 22 4898776666677889988765 99999999999999875 3455799999999
Q ss_pred -CCCCceeEEEEEeCccccccC
Q 047341 83 -YLRDYLIGTVRFLVSNISLSV 103 (254)
Q Consensus 83 -~~~D~~LG~~~IpL~~l~~~~ 103 (254)
+..++++|.+.++|.++....
T Consensus 120 ~~s~n~lv~~~e~~~t~f~~kq 141 (644)
T PLN02964 120 RLSKNTLVGYCELDLFDFVTQE 141 (644)
T ss_pred CCCHHHhhhheeecHhhccHHH
Confidence 667999999999988876554
No 126
>KOG1011 consensus Neurotransmitter release regulator, UNC-13 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.65 E-value=0.00015 Score=72.11 Aligned_cols=106 Identities=17% Similarity=0.233 Sum_probs=81.1
Q ss_pred cEEEEEEEeeeCCCCCCCCCCCCCeEEEEEECC------cCeEEeEeecCCCCCCeeceEEEEEecCCCccCCCcEEEEE
Q 047341 4 QILEIILISAQGLKSPSSKMRRMQTYALVWIDS------STKLCTRVDRAGAESPIWNEKFLFKVTPEFLSSETSAISVE 77 (254)
Q Consensus 4 g~L~V~VisA~~L~~~~d~~G~~DPYV~V~l~~------~~k~rTkv~k~gt~NP~WNE~f~F~v~~~~l~~~~~~L~ve 77 (254)
..+.|.|+.|.+|+-. ..|.-.|||.|.+-| +.|+.|+.. .++-.|-+||+|.|-+..+. .-+.-.|.|.
T Consensus 1125 hkvtvkvvaandlkwq--tsgmFrPFVEV~ivGP~lsDKKRK~~TKtK-snnWaPKyNEtF~f~Lg~e~-~Pe~YEL~~~ 1200 (1283)
T KOG1011|consen 1125 HKVTVKVVAANDLKWQ--TSGMFRPFVEVHIVGPHLSDKKRKFSTKTK-SNNWAPKYNETFHFFLGNEG-GPEHYELQFC 1200 (1283)
T ss_pred ceEEEEEEecccccch--hccccccceEEEEecCcccchhhhcccccc-CCCcCcccCceeEEEeccCC-CCceEEEEEe
Confidence 4678999999999974 467789999999853 245566664 45778999999999987642 1245678888
Q ss_pred EEecCCCC-CceeEEEEEeCccccccCCCCCCeeEEEEeeC
Q 047341 78 IYASGYLR-DYLIGTVRFLVSNISLSVATKTPSFTAFQIRR 117 (254)
Q Consensus 78 V~D~d~~~-D~~LG~~~IpL~~l~~~~~~~~~~~~~~~L~~ 117 (254)
|.|+=+.+ |+.+|.+.++|.++...+. .-.|++|.+
T Consensus 1201 VKDYCFAReDRvvGl~VlqL~~va~kGS----~a~W~pLgr 1237 (1283)
T KOG1011|consen 1201 VKDYCFAREDRVVGLAVLQLRSVADKGS----CACWVPLGR 1237 (1283)
T ss_pred ehhheeecccceeeeeeeehhhHhhcCc----eeEeeeccc
Confidence 88887654 8899999999999987754 246888854
No 127
>KOG3837 consensus Uncharacterized conserved protein, contains DM14 and C2 domains [General function prediction only]
Probab=97.64 E-value=3.6e-05 Score=72.85 Aligned_cols=125 Identities=18% Similarity=0.230 Sum_probs=90.3
Q ss_pred EEEEEEEeeeCCCCCCCCCCCCCeEEEEEEC----CcCeEEeEeecCCCCCCeeceEEEEEecCCC-cc------CCCcE
Q 047341 5 ILEIILISAQGLKSPSSKMRRMQTYALVWID----SSTKLCTRVDRAGAESPIWNEKFLFKVTPEF-LS------SETSA 73 (254)
Q Consensus 5 ~L~V~VisA~~L~~~~d~~G~~DPYV~V~l~----~~~k~rTkv~k~gt~NP~WNE~f~F~v~~~~-l~------~~~~~ 73 (254)
.|++.|+.+.++... ...-..|.|+++++- ..++.+|.|+++ +..|.|+|.|.+.+.... +. .....
T Consensus 368 elel~ivrg~~~pvp-~gp~hld~fvr~efpl~nD~~qk~kt~vik~-t~SPdfde~fklni~rg~~~nr~fqR~fkr~g 445 (523)
T KOG3837|consen 368 ELELAIVRGQKNPVP-GGPMHLDQFVRLEFPLENDSRQKLKTDVIKV-TPSPDFDEDFKLNIRRGPGLNREFQRRFKRLG 445 (523)
T ss_pred HhHHHHhhcccCCCC-CCchhHHhhhcccccccccccccCccceeeC-CCCCCcccceeeeccCCCcccHHHHHHHHhcC
Confidence 466777888877765 223346789988772 235678999975 999999999999987611 00 01346
Q ss_pred EEEEEEecC-C-CCCceeEEEEEeCccccccCCCCCCeeEEEEeeCCCCCcceEEEEEEEEEeC
Q 047341 74 ISVEIYASG-Y-LRDYLIGTVRFLVSNISLSVATKTPSFTAFQIRRPSGRFQGVLSIGSMLIDG 135 (254)
Q Consensus 74 L~veV~D~d-~-~~D~~LG~~~IpL~~l~~~~~~~~~~~~~~~L~~~~g~~~G~I~lsl~f~p~ 135 (254)
+.|+||+++ + .+|.|+|++.|.|.-|..... ....|+|.+......|.|.+.|++..+
T Consensus 446 ~kfeifhkggf~rSdkl~gt~nikle~Len~ce----i~e~~~l~DGRK~vGGkLevKvRiR~P 505 (523)
T KOG3837|consen 446 KKFEIFHKGGFNRSDKLTGTGNIKLEILENMCE----ICEYLPLKDGRKAVGGKLEVKVRIRQP 505 (523)
T ss_pred eeEEEeeccccccccceeceeeeeehhhhcccc----hhhceeccccccccCCeeEEEEEEecc
Confidence 899999998 3 369999999999987755432 245678876555678999999998743
No 128
>KOG2060 consensus Rab3 effector RIM1 and related proteins, contain PDZ and C2 domains [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.40 E-value=0.00012 Score=68.53 Aligned_cols=107 Identities=18% Similarity=0.343 Sum_probs=83.0
Q ss_pred ccEEEEEEEeeeCCCCCCCCCCCCCeEEEEEECCc----CeEEeEeecCCCCCCeeceEEEEEecCCCccCCCcEEEEEE
Q 047341 3 TQILEIILISAQGLKSPSSKMRRMQTYALVWIDSS----TKLCTRVDRAGAESPIWNEKFLFKVTPEFLSSETSAISVEI 78 (254)
Q Consensus 3 ~g~L~V~VisA~~L~~~~d~~G~~DPYV~V~l~~~----~k~rTkv~k~gt~NP~WNE~f~F~v~~~~l~~~~~~L~veV 78 (254)
.|.|+|.|+.|++|.........++|||+|++.+. .+.+|+..++ +..|.+-+...|.-++ +...|.+.|
T Consensus 268 ~g~l~vEii~ar~l~~k~~~k~~~apyVkVYlL~~g~c~ak~ktk~A~k-T~~plyqq~l~f~~sp-----~~k~Lq~tv 341 (405)
T KOG2060|consen 268 KGDLEVEIIRARGLVVKPGSKSLPAPYVKVYLLENGFCIAKKKTKSARK-TLDPLYQQQLSFDQSP-----PGKYLQGTV 341 (405)
T ss_pred cCceeEEEEecccccccCCcccccCceeEEEEcCCCceecccccccccc-cCchhhhhhhhhccCC-----CccEEEEEE
Confidence 46799999999999765334446899999999753 4568888775 8888888888888876 588999999
Q ss_pred Ee-cC-CCCCceeEEEEEeCccccccCCCCCCeeEEEEeeCC
Q 047341 79 YA-SG-YLRDYLIGTVRFLVSNISLSVATKTPSFTAFQIRRP 118 (254)
Q Consensus 79 ~D-~d-~~~D~~LG~~~IpL~~l~~~~~~~~~~~~~~~L~~~ 118 (254)
|. +. ...+.|+|.++|-+.+|-... .+...||++...
T Consensus 342 ~gdygRmd~k~fmg~aqi~l~eL~ls~---~~~igwyKlfgs 380 (405)
T KOG2060|consen 342 WGDYGRMDHKSFMGVAQIMLDELNLSS---SPVIGWYKLFGS 380 (405)
T ss_pred eccccccchHHHhhHHHHHhhhhcccc---ccceeeeeccCC
Confidence 84 44 446789999999999886554 235789998753
No 129
>PF10358 NT-C2: N-terminal C2 in EEIG1 and EHBP1 proteins; InterPro: IPR019448 This entry represents the N-terminal 150 residues of a family of conserved proteins which are induced by oestrogen []. Proteins in this entry are usually annotated as Fam102A, Fam102B, or Eeig1 (early oestrogen-responsive gene product 1).
Probab=97.21 E-value=0.026 Score=45.49 Aligned_cols=127 Identities=13% Similarity=0.167 Sum_probs=80.9
Q ss_pred EEEEEEEeeeCCCCCCCCCCCCCeEEEEEECCcC--eEEeEeecCCCCCCeeceEEEEEecC----CCccCCCcEEEEEE
Q 047341 5 ILEIILISAQGLKSPSSKMRRMQTYALVWIDSST--KLCTRVDRAGAESPIWNEKFLFKVTP----EFLSSETSAISVEI 78 (254)
Q Consensus 5 ~L~V~VisA~~L~~~~d~~G~~DPYV~V~l~~~~--k~rTkv~k~gt~NP~WNE~f~F~v~~----~~l~~~~~~L~veV 78 (254)
.+.|+|....+++.. ....||+..-+... ...|.........-.|||.|.+.+.- ..-..+...+.|.|
T Consensus 8 ~~~l~i~~l~~~p~~-----~~~v~v~wkr~~~~~~~~~t~~~~~~~~~v~w~e~~~~~~tl~~~~k~~~~~~K~~~~~v 82 (143)
T PF10358_consen 8 QFDLTIHELENLPSS-----NGKVFVKWKRGDKSKGSGTTSRANVKNGKVQWNEEFSFPCTLYRDKKSKEFQPKELKFSV 82 (143)
T ss_pred EEEEEEEEeECcCCC-----CCEEEEEEEECCCCccceeeeeeeccccEEEEeeEEEEEEEEEEcCCCCcEeeEEEEEEE
Confidence 467888899888863 12334444433332 34665544445678999999887542 10012456788999
Q ss_pred EecCCCCC-ceeEEEEEeCccccccCCCCCCeeEEEEeeCCCCCcceEEEEEEEEEeCCCCC
Q 047341 79 YASGYLRD-YLIGTVRFLVSNISLSVATKTPSFTAFQIRRPSGRFQGVLSIGSMLIDGSDLP 139 (254)
Q Consensus 79 ~D~d~~~D-~~LG~~~IpL~~l~~~~~~~~~~~~~~~L~~~~g~~~G~I~lsl~f~p~~~~p 139 (254)
+.....+. ..||.+.|.|.++..... ......++|... ......|++++.+.+....|
T Consensus 83 ~~~~~~~~k~~lG~~~inLaey~~~~~--~~~~~~~~l~~~-~~~~a~L~isi~~~~~~~~~ 141 (143)
T PF10358_consen 83 FEVDGSGKKKVLGKVSINLAEYANEDE--EPITVRLLLKKC-KKSNATLSISISLSELREDP 141 (143)
T ss_pred EEecCCCccceEEEEEEEHHHhhCcCC--CcEEEEEeCccC-CCCCcEEEEEEEEEECccCC
Confidence 88753333 699999999999887542 223556666542 35677899999988765544
No 130
>cd08683 C2_C2cd3 C2 domain found in C2 calcium-dependent domain containing 3 (C2cd3) proteins. C2cd3 is a novel C2 domain-containing protein specific to vertebrates. C2cd3 functions in regulator of cilia formation, Hedgehog signaling, and mouse embryonic development. Mutations in C2cd3 mice resulted in lethality in some cases and exencephaly, a twisted body axis, and pericardial edema in others. The presence of calcium-dependent lipid-binding domains in C2cd3 suggests a potential role in vesicular transport. C2cd3 is also an interesting candidate for ciliopathy because of its orthology to certain cilia-related genetic disease loci on chromosome. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances inc
Probab=97.17 E-value=0.00089 Score=54.49 Aligned_cols=97 Identities=21% Similarity=0.290 Sum_probs=69.0
Q ss_pred EEEEEEeeeCCCCCC--------CC----CCCCCeEEEEEEC--C-cCeEEeEeecCCCCCCeeceEEEEEec-------
Q 047341 6 LEIILISAQGLKSPS--------SK----MRRMQTYALVWID--S-STKLCTRVDRAGAESPIWNEKFLFKVT------- 63 (254)
Q Consensus 6 L~V~VisA~~L~~~~--------d~----~G~~DPYV~V~l~--~-~~k~rTkv~k~gt~NP~WNE~f~F~v~------- 63 (254)
|.|.|+.|.+|+... +. .-..++||++.+. + ....+|+++.. +-.|.||..+.|+++
T Consensus 1 lsv~I~RA~GLqaAA~~la~~~~~l~y~a~VGVN~yv~i~lSFl~~~e~r~TrtVAr-SFcPeF~Hh~Efpc~lv~~~~~ 79 (143)
T cd08683 1 LSVQIHRASGLQAAARALAEQDPSLQYSATVGVNSYVTIHLSFLPEKELRRTRTVAR-SFCPEFNHHVEFPCNLVVQRNS 79 (143)
T ss_pred CeEEeehhhhHHHHHHHHhhhCcccccceecccceEEEEEeccCCCCceeeccchhh-hcCCCccceEEEecccEEEcCC
Confidence 467888888886421 00 1136999999963 3 34568888765 899999999999987
Q ss_pred -CC-Cc--cCCCcEEEEEEEecCC-----------CCCceeEEEEEeCccccccC
Q 047341 64 -PE-FL--SSETSAISVEIYASGY-----------LRDYLIGTVRFLVSNISLSV 103 (254)
Q Consensus 64 -~~-~l--~~~~~~L~veV~D~d~-----------~~D~~LG~~~IpL~~l~~~~ 103 (254)
+. .+ ..+...|.|+||+... .+|-+||.+.||+.+|+...
T Consensus 80 Ge~~sLAElLe~~eiil~vwHr~~~s~~~~~~~~~~~DilLG~v~IPl~~Ll~~r 134 (143)
T cd08683 80 GEAISLAELLESAEIILEVWHRNPKSAGDTIKIETSGDILLGTVKIPLRDLLTKR 134 (143)
T ss_pred CccccHHHHhhcceEEeeeeecCCccccceeccCcCCcEEEEEEEeeHHHHhhcc
Confidence 10 00 1246789999999762 25779999999999987654
No 131
>KOG1326 consensus Membrane-associated protein FER-1 and related ferlins, contain multiple C2 domains [Cell wall/membrane/envelope biogenesis]
Probab=97.04 E-value=0.00017 Score=74.23 Aligned_cols=116 Identities=18% Similarity=0.218 Sum_probs=79.5
Q ss_pred EEEEEEeeeCCCCCCCCCCCCCeEEEEEECCcCeEEeEeecCCCCCCeeceEEEEEe---cC--CCccCCCcEEEEEEEe
Q 047341 6 LEIILISAQGLKSPSSKMRRMQTYALVWIDSSTKLCTRVDRAGAESPIWNEKFLFKV---TP--EFLSSETSAISVEIYA 80 (254)
Q Consensus 6 L~V~VisA~~L~~~~d~~G~~DPYV~V~l~~~~k~rTkv~k~gt~NP~WNE~f~F~v---~~--~~l~~~~~~L~veV~D 80 (254)
+|+.|-+|+.|..+ +..+-+|||+.|..-++.+ .|-+.. +++||+||++..|.- .. ..+......+.|+|||
T Consensus 208 lR~yiyQar~L~a~-dk~~~sdp~a~v~f~~qs~-~T~~v~-~tl~ptwdq~~~f~~~ei~ge~~~~~~~ppi~v~e~yd 284 (1105)
T KOG1326|consen 208 LRSYIYQARALGAP-DKDDESDPDAAVEFCGQSK-ETEVVP-GTLNPTWDQTIIFDEVEIYGEAHLVLKNPPIRVFEVYD 284 (1105)
T ss_pred hHHHHHHHHhhcCC-CcccCCCchhhhhcccccc-eeEeec-CcCCCCccceeeccceeecCccchhhcCCCeEEEEeeh
Confidence 45666789999988 7888899999999987654 787775 599999999988862 21 1111223567899999
Q ss_pred cC-CCCCceeEEEEEeCccccccCCCCCCeeEEEEeeCCCCCcceEEEEEE
Q 047341 81 SG-YLRDYLIGTVRFLVSNISLSVATKTPSFTAFQIRRPSGRFQGVLSIGS 130 (254)
Q Consensus 81 ~d-~~~D~~LG~~~IpL~~l~~~~~~~~~~~~~~~L~~~~g~~~G~I~lsl 130 (254)
.+ ...++|+|.......-... . +...|+++.+ ++...|.+.++.
T Consensus 285 ~dr~g~~ef~gr~~~~p~V~~~-~----p~lkw~p~~r-g~~l~gd~l~a~ 329 (1105)
T KOG1326|consen 285 LDRSGINEFKGRKKQRPYVMVQ-C----PALKWVPTMR-GAFLDGDVLIAA 329 (1105)
T ss_pred hhhhchHHhhcccccceEEEec-C----CccceEEeec-ccccccchhHHH
Confidence 98 5568999976554322222 1 2346677654 455666666654
No 132
>PF15627 CEP76-C2: CEP76 C2 domain
Probab=96.31 E-value=0.074 Score=44.59 Aligned_cols=129 Identities=12% Similarity=0.156 Sum_probs=82.8
Q ss_pred cEEEEEEEeeeCCCC-CCCCCCCCCeEEEEEEC-CcCeEEeEeecCCCCCCeeceEEEEEecCCCc---------cCCCc
Q 047341 4 QILEIILISAQGLKS-PSSKMRRMQTYALVWID-SSTKLCTRVDRAGAESPIWNEKFLFKVTPEFL---------SSETS 72 (254)
Q Consensus 4 g~L~V~VisA~~L~~-~~d~~G~~DPYV~V~l~-~~~k~rTkv~k~gt~NP~WNE~f~F~v~~~~l---------~~~~~ 72 (254)
.-|+|.|..++-... ..+..+..+.-.++.+. ..++++|+.+.- +-+|.++|.|.|++..+.. .....
T Consensus 9 ~yL~l~vlgGkAFld~l~~~~~~~~s~~~l~l~f~~QRF~S~~Vp~-~~eP~f~e~Flf~l~~~~~~~~~~~~~lls~~~ 87 (156)
T PF15627_consen 9 RYLHLRVLGGKAFLDHLQEPEGQVCSTFTLHLHFRGQRFRSKPVPC-ACEPDFNEEFLFELPRDSFGAGSTATTLLSISD 87 (156)
T ss_pred eEEEEEEeCchhHhhhhhccCCCCceEEEEEEEecCceEecCCccc-ccCCCCCCcEEEEecccccccccchhHhhcCCC
Confidence 458889988865432 10111455666666664 457899988764 8999999999999987431 11235
Q ss_pred EEEEEEEecCCC-CCceeEEEEEeCccccccCCCCCCeeEEEEeeCCCC---CcceEEEEEEEEEeC
Q 047341 73 AISVEIYASGYL-RDYLIGTVRFLVSNISLSVATKTPSFTAFQIRRPSG---RFQGVLSIGSMLIDG 135 (254)
Q Consensus 73 ~L~veV~D~d~~-~D~~LG~~~IpL~~l~~~~~~~~~~~~~~~L~~~~g---~~~G~I~lsl~f~p~ 135 (254)
.|++.|...+.. ...++|+-.+.=..++..+.. .......|..... -+.|.|++++..+|.
T Consensus 88 pihivli~~d~~~~~~Lv~s~~ldWR~vL~s~~~--~~~~~vEL~G~~~e~kv~~GiL~l~lELlP~ 152 (156)
T PF15627_consen 88 PIHIVLIRTDPSGETTLVGSHFLDWRKVLCSGNG--STSFTVELCGVGPESKVPVGILDLRLELLPN 152 (156)
T ss_pred ceEEEEEEecCCCceEeeeeceehHHHHhccCCC--ccceeEEEeccCCCCccceeEEEEEEEeecC
Confidence 677778777643 346888777765555544321 1134455554332 379999999999976
No 133
>cd08398 C2_PI3K_class_I_alpha C2 domain present in class I alpha phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, alpha isoform PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a c
Probab=96.29 E-value=0.044 Score=45.98 Aligned_cols=88 Identities=14% Similarity=0.120 Sum_probs=58.7
Q ss_pred cEEEEEEEeeeCCCCCCCCCCCCCeEEEEEEC-CcC----eEEeEeecCCCCCCeeceEEEEEecCCCccCCCcEEEEEE
Q 047341 4 QILEIILISAQGLKSPSSKMRRMQTYALVWID-SST----KLCTRVDRAGAESPIWNEKFLFKVTPEFLSSETSAISVEI 78 (254)
Q Consensus 4 g~L~V~VisA~~L~~~~d~~G~~DPYV~V~l~-~~~----k~rTkv~k~gt~NP~WNE~f~F~v~~~~l~~~~~~L~veV 78 (254)
..++|+|++|.++.-. + ..|-||.+.+- +.. ...|+-.. ..++.|||-+.|++.-..+. ....|.|.|
T Consensus 8 ~~~~v~i~~~~~~~~~-~---~~~l~V~v~l~~g~~~L~~pv~T~~v~--~~~~~WnEwL~fpI~i~dLP-r~ArL~iti 80 (158)
T cd08398 8 SNLRIKILCATYVNVN-D---IDKIYVRTGIYHGGEPLCDNVNTQRVP--CSNPRWNEWLDYDIYIPDLP-RSARLCLSI 80 (158)
T ss_pred CCeEEEEEeeccCCCC-C---cCeEEEEEEEEECCEEccCeeEecccC--CCCCccceeEEcccchhcCC-hhheEEEEE
Confidence 4689999999988754 2 36888888662 221 12343222 46899999999987654331 367899999
Q ss_pred EecCCC-----CCceeEEEEEeCcc
Q 047341 79 YASGYL-----RDYLIGTVRFLVSN 98 (254)
Q Consensus 79 ~D~d~~-----~D~~LG~~~IpL~~ 98 (254)
|+.... ....||.+.++|=+
T Consensus 81 ~~~~~~~~~k~~~~~iG~~ni~LFd 105 (158)
T cd08398 81 CSVKGRKGAKEEHCPLAWGNINLFD 105 (158)
T ss_pred EEEecccCCCCceEEEEEEEEEEEC
Confidence 997621 12468888887643
No 134
>PF11618 DUF3250: Protein of unknown function (DUF3250); InterPro: IPR021656 This family of proteins represents a protein with unknown function. It may be the C2 domain from KIAA1005 however this cannot be confirmed. ; PDB: 2YRB_A.
Probab=96.26 E-value=0.025 Score=44.45 Aligned_cols=101 Identities=16% Similarity=0.035 Sum_probs=55.8
Q ss_pred EEEEEECCcCeEEeEeecCCCCCCeeceEEEEEecCCCcc---CCCcEEEEEEEecCCCCCceeEEEEEeCccccccCCC
Q 047341 29 YALVWIDSSTKLCTRVDRAGAESPIWNEKFLFKVTPEFLS---SETSAISVEIYASGYLRDYLIGTVRFLVSNISLSVAT 105 (254)
Q Consensus 29 YV~V~l~~~~k~rTkv~k~gt~NP~WNE~f~F~v~~~~l~---~~~~~L~veV~D~d~~~D~~LG~~~IpL~~l~~~~~~ 105 (254)
||.+.+-.-....|.+.. +.+|.+|-+-.|.|..+.+. .....|.||++..-...-+.||.++|++..++....
T Consensus 2 Fct~dFydfEtq~Tpvv~--G~~p~y~fts~y~V~~d~~fl~YLq~~~~~lELhqa~g~d~~tla~~~i~l~~ll~~~~- 78 (107)
T PF11618_consen 2 FCTYDFYDFETQTTPVVR--GLNPFYDFTSQYKVTMDDLFLHYLQTGSLTLELHQALGSDFETLAAGQISLRPLLESNG- 78 (107)
T ss_dssp EEEE-STT---EE---EE--SSS----EEEEEEE--SHHHHHHHHH--EEEEEEEE-SS-EEEEEEEEE--SHHHH--S-
T ss_pred EEEEEeeceeeeccccee--CCCccceeEEEEEEEcCHHHHHHhhcCCEEEEEEeeccCCeEEEEEEEeechhhhcCCC-
Confidence 555665544556888886 79999999988888763210 125789999998763345899999999999986553
Q ss_pred CCCeeEEEEeeCCCCCcceEEEEEEEEE
Q 047341 106 KTPSFTAFQIRRPSGRFQGVLSIGSMLI 133 (254)
Q Consensus 106 ~~~~~~~~~L~~~~g~~~G~I~lsl~f~ 133 (254)
........+...++..-|.|.+.++..
T Consensus 79 -~~i~~~~~l~g~~~~~~g~l~y~~rl~ 105 (107)
T PF11618_consen 79 -ERIHGSATLVGVSGEDFGTLEYWIRLR 105 (107)
T ss_dssp ---EEEEEEE-BSSS-TSEEEEEEEEEE
T ss_pred -ceEEEEEEEeccCCCeEEEEEEEEEec
Confidence 123445566666778999999999875
No 135
>cd08693 C2_PI3K_class_I_beta_delta C2 domain present in class I beta and delta phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, beta and delta isoforms of PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Ty
Probab=96.04 E-value=0.061 Score=45.64 Aligned_cols=74 Identities=20% Similarity=0.335 Sum_probs=49.8
Q ss_pred cEEEEEEEeeeCCCCCCCCCCCCCeEEEEEE--CCc---CeEEeEeecCCCCCCeeceEEEEEecCCCccCCCcEEEEEE
Q 047341 4 QILEIILISAQGLKSPSSKMRRMQTYALVWI--DSS---TKLCTRVDRAGAESPIWNEKFLFKVTPEFLSSETSAISVEI 78 (254)
Q Consensus 4 g~L~V~VisA~~L~~~~d~~G~~DPYV~V~l--~~~---~k~rTkv~k~gt~NP~WNE~f~F~v~~~~l~~~~~~L~veV 78 (254)
..++|+|+++.+|.-. + ...+-||.+.+ ++. ....|+... ...++.|||.+.|++.-..+. ....|.|.|
T Consensus 8 ~~f~i~i~~~~~~~~~-~--~~~~l~V~~~lyhG~~~L~~p~~T~~~~-~~~~~~Wnewl~F~I~i~dLP-r~ArLciti 82 (173)
T cd08693 8 EKFSITLHKISNLNAA-E--RTMKVGVQAGLFHGGESLCKTVKTSEVS-GKNDPVWNETLEFDINVCDLP-RMARLCFAI 82 (173)
T ss_pred CCEEEEEEEeccCccC-C--CCceEEEEEEEEECCEEccCceEccccC-CCCccccceeEEcccchhcCC-hhHeEEEEE
Confidence 4589999999998852 1 23677888765 322 123454332 246799999999987654331 367899999
Q ss_pred EecC
Q 047341 79 YASG 82 (254)
Q Consensus 79 ~D~d 82 (254)
|+..
T Consensus 83 ~~~~ 86 (173)
T cd08693 83 YEVS 86 (173)
T ss_pred EEec
Confidence 9865
No 136
>KOG1452 consensus Predicted Rho GTPase-activating protein [Signal transduction mechanisms]
Probab=95.97 E-value=0.015 Score=53.83 Aligned_cols=116 Identities=18% Similarity=0.175 Sum_probs=77.5
Q ss_pred ccEEEEEEEeeeCCCCCCCC-CCCCCeEEEEEECCcCeEEeEeecCCCCCCeeceEEEEEecCCCccCCCcEEEEEEEec
Q 047341 3 TQILEIILISAQGLKSPSSK-MRRMQTYALVWIDSSTKLCTRVDRAGAESPIWNEKFLFKVTPEFLSSETSAISVEIYAS 81 (254)
Q Consensus 3 ~g~L~V~VisA~~L~~~~d~-~G~~DPYV~V~l~~~~k~rTkv~k~gt~NP~WNE~f~F~v~~~~l~~~~~~L~veV~D~ 81 (254)
+|+|.|++..+++|+-.... .-..+-||++.++.+.+.||.|.. ++.-=.|.|.|...+-. ...+.+-||.|
T Consensus 50 tGiL~~H~~~GRGLr~~p~~kglt~~~ycVle~drqh~aRt~vrs-~~~~f~w~e~F~~Dvv~------~~vl~~lvySW 122 (442)
T KOG1452|consen 50 TGILYFHAYNGRGLRMTPQQKGLTVCFYCVLEPDRQHPARTRVRS-SGPGFAWAEDFKHDVVN------IEVLHYLVYSW 122 (442)
T ss_pred cceEEEEEecccccccChhccCceeeeeeeeeecccCcccccccc-CCCCccchhhceeeccc------ceeeeEEEeec
Confidence 58899999999999865322 346788999999988888997753 46777899999998864 68899999998
Q ss_pred CC-CCCce--eEEEEEeCccccccCCCCCCeeEEEEeeCCCCCcceEEEEEEEEEeC
Q 047341 82 GY-LRDYL--IGTVRFLVSNISLSVATKTPSFTAFQIRRPSGRFQGVLSIGSMLIDG 135 (254)
Q Consensus 82 d~-~~D~~--LG~~~IpL~~l~~~~~~~~~~~~~~~L~~~~g~~~G~I~lsl~f~p~ 135 (254)
+. .+.++ +| .|.+..+...+++ ..+.+ .-.++|.+.+.+.|.+.
T Consensus 123 ~pq~RHKLC~~g--~l~~~~v~rqspd-----~~~Al---~lePrgq~~~r~~~~Dp 169 (442)
T KOG1452|consen 123 PPQRRHKLCHLG--LLEAFVVDRQSPD-----RVVAL---YLEPRGQPPLRLPLADP 169 (442)
T ss_pred Cchhhccccccc--hhhhhhhhhcCCc-----ceeee---ecccCCCCceecccCCh
Confidence 83 33443 44 2333233333221 11122 23466777777776543
No 137
>cd08380 C2_PI3K_like C2 domain present in phosphatidylinositol 3-kinases (PI3Ks). C2 domain present in all classes of PI3Ks. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. In addition some PI3Ks contain a Ras-binding domain and/or a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm
Probab=95.11 E-value=0.2 Score=41.31 Aligned_cols=91 Identities=18% Similarity=0.209 Sum_probs=59.0
Q ss_pred cEEEEEEEeeeCCCCCCCCCCCCCeEEEEEE--CCc---CeEEeEeecCCCCCCeeceEEEEEecCCCccCCCcEEEEEE
Q 047341 4 QILEIILISAQGLKSPSSKMRRMQTYALVWI--DSS---TKLCTRVDRAGAESPIWNEKFLFKVTPEFLSSETSAISVEI 78 (254)
Q Consensus 4 g~L~V~VisA~~L~~~~d~~G~~DPYV~V~l--~~~---~k~rTkv~k~gt~NP~WNE~f~F~v~~~~l~~~~~~L~veV 78 (254)
..++|.|....++... .....+-||.+.+ ++. ....|+... ...++.|||.+.|++.-..+ -....|.|.|
T Consensus 8 ~~~~i~i~~~~~~~~~--~~~~~~l~V~~~l~~g~~~l~~~~~t~~~~-~~~~~~Wne~l~F~i~~~~L-P~~arL~itl 83 (156)
T cd08380 8 FNLRIKIHGITNINLL--DSEDLKLYVRVQLYHGGEPLCPPQSTKKVP-FSTSVTWNEWLTFDILISDL-PREARLCLSI 83 (156)
T ss_pred CCeEEEEEeecccccc--CCCceeEEEEEEEEECCEEccCceeccCCc-CCCCCcccceeEccchhhcC-ChhheEEEEE
Confidence 4578888888887642 1234677777766 332 122333322 23789999999998654332 1367899999
Q ss_pred EecCCC---CCceeEEEEEeCcc
Q 047341 79 YASGYL---RDYLIGTVRFLVSN 98 (254)
Q Consensus 79 ~D~d~~---~D~~LG~~~IpL~~ 98 (254)
|+.... .+..||.+.++|=+
T Consensus 84 ~~~~~~~~~~~~~iG~~~~~lFd 106 (156)
T cd08380 84 YAVSEPGSKKEVPLGWVNVPLFD 106 (156)
T ss_pred EEEecCCCCcceEEEEEeEEeEc
Confidence 997633 35799999998744
No 138
>KOG1327 consensus Copine [Signal transduction mechanisms]
Probab=94.96 E-value=0.044 Score=53.97 Aligned_cols=87 Identities=16% Similarity=0.230 Sum_probs=60.9
Q ss_pred EeeeCCCCCCCCCCCCCeEEEEEEC--Cc---CeEEeEeecCCCCCCeeceEEEEEecCCCccCCCcEEEEEEEecCCC-
Q 047341 11 ISAQGLKSPSSKMRRMQTYALVWID--SS---TKLCTRVDRAGAESPIWNEKFLFKVTPEFLSSETSAISVEIYASGYL- 84 (254)
Q Consensus 11 isA~~L~~~~d~~G~~DPYV~V~l~--~~---~k~rTkv~k~gt~NP~WNE~f~F~v~~~~l~~~~~~L~veV~D~d~~- 84 (254)
..|++|.+. +.++++|||..+.-- .. .-++|.+.++ ++||.|-.. .+.+..---......+.++|||++..
T Consensus 143 ~~~~~ld~k-d~f~ksd~~l~~~~~~~d~s~~~~~~tEv~~n-~l~p~w~~~-~i~~~~l~~~~~~~~~~i~~~d~~~~~ 219 (529)
T KOG1327|consen 143 FRAKNLDPK-DFFSKSDPYLEFYKRVDDGSTQMLYRTEVVKN-TLNPQWAPF-SISLQSLCSKDGNRPIQIECYDYDSNG 219 (529)
T ss_pred eeeeecCcc-cccccCCcceEEEEecCCCceeeccccceecc-CCCCccccc-ccchhhhcccCCCCceEEEEeccCCCC
Confidence 457888887 899999999876542 11 2358888775 999999862 22222100012467888999999944
Q ss_pred CCceeEEEEEeCcccc
Q 047341 85 RDYLIGTVRFLVSNIS 100 (254)
Q Consensus 85 ~D~~LG~~~IpL~~l~ 100 (254)
.+++||++..++.++.
T Consensus 220 ~~~~ig~~~tt~~~~~ 235 (529)
T KOG1327|consen 220 KHDLIGKFQTTLSELQ 235 (529)
T ss_pred CcCceeEecccHHHhc
Confidence 5699999999888875
No 139
>cd04012 C2A_PI3K_class_II C2 domain first repeat present in class II phosphatidylinositol 3-kinases (PI3Ks). There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. Class II PIK3s act downstream of receptors for growth factors, integrins, and chemokines. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that c
Probab=94.91 E-value=0.16 Score=42.79 Aligned_cols=93 Identities=14% Similarity=0.155 Sum_probs=59.7
Q ss_pred ccEEEEEEEeeeCCCCCCCCCCCCCeEEEEEE--CCc---CeEEeEee---cCCCCCCeeceEEEEEecCCCccCCCcEE
Q 047341 3 TQILEIILISAQGLKSPSSKMRRMQTYALVWI--DSS---TKLCTRVD---RAGAESPIWNEKFLFKVTPEFLSSETSAI 74 (254)
Q Consensus 3 ~g~L~V~VisA~~L~~~~d~~G~~DPYV~V~l--~~~---~k~rTkv~---k~gt~NP~WNE~f~F~v~~~~l~~~~~~L 74 (254)
...++|+|.++.++... ......|-||.+.+ ++. ....|+.. +.-...+.|||.+.|++.-..+ --...|
T Consensus 7 ~~~~~i~v~~~h~~~~~-~~~~~~~~~v~~~l~~g~~~L~~~~~T~~~~~~~~f~~~~~Wnewl~F~i~i~~L-PrearL 84 (171)
T cd04012 7 TDLLSVTVSSLHRIPPT-WVQSFEDFYLSCSLYHGGRLLCSPVTTKPVKITKSFFPRVVWDEWIEFPIPVCQL-PRESRL 84 (171)
T ss_pred cccEEEEEEEeecCChH-HhhccccEEEEEEEEECCEECcCceeccccccccCccccccccceEECccchhcC-ChhHEE
Confidence 34688999999999876 43335788888866 322 12244321 1112357799999998765333 136789
Q ss_pred EEEEEecCCC----------CCceeEEEEEeCc
Q 047341 75 SVEIYASGYL----------RDYLIGTVRFLVS 97 (254)
Q Consensus 75 ~veV~D~d~~----------~D~~LG~~~IpL~ 97 (254)
.|.||+.... .+..||.+.++|=
T Consensus 85 ~itl~~~~~~~~~~~~~~~~~~~~lG~~~~~LF 117 (171)
T cd04012 85 VLTLYGTTSSPDGGSNKQRMGPEELGWVSLPLF 117 (171)
T ss_pred EEEEEEEecCCccccccccccceEEEEEeEeeE
Confidence 9999987632 2457787777763
No 140
>cd08399 C2_PI3K_class_I_gamma C2 domain present in class I gamma phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, gamma isoform PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a cir
Probab=94.80 E-value=0.45 Score=40.72 Aligned_cols=75 Identities=12% Similarity=0.205 Sum_probs=46.9
Q ss_pred cEEEEEEEeeeCCCCCCCCCCCCCeEEEEEE--CCc--CeEEeEeecCCCCCCeeceEEEEEecCCCccCCCcEEEEEEE
Q 047341 4 QILEIILISAQGLKSPSSKMRRMQTYALVWI--DSS--TKLCTRVDRAGAESPIWNEKFLFKVTPEFLSSETSAISVEIY 79 (254)
Q Consensus 4 g~L~V~VisA~~L~~~~d~~G~~DPYV~V~l--~~~--~k~rTkv~k~gt~NP~WNE~f~F~v~~~~l~~~~~~L~veV~ 79 (254)
..++|+|+++.. ++. +......-||.+.+ +.. ...+|.... -+.+|.|||-+.|++.-..+. ....|.|.||
T Consensus 10 ~~friki~~~~~-~~~-~~~~~~~l~V~~~Ly~g~~~l~~~~T~~~~-~~~~~~WnEwL~f~I~~~dLP-~~arLc~ti~ 85 (178)
T cd08399 10 RKFRVKILGIDI-PVL-PRNTDLTVFVEANIQHGQQVLCQRRTSPKP-FTEEVLWNTWLEFDIKIKDLP-KGALLNLQIY 85 (178)
T ss_pred CCEEEEEEeecc-cCc-CCCCceEEEEEEEEEECCeecccceeeccC-CCCCccccccEECccccccCC-hhhEEEEEEE
Confidence 357899999873 333 22333446666644 221 122554433 367799999999987654331 3689999999
Q ss_pred ecC
Q 047341 80 ASG 82 (254)
Q Consensus 80 D~d 82 (254)
+..
T Consensus 86 ~~~ 88 (178)
T cd08399 86 CGK 88 (178)
T ss_pred EEe
Confidence 964
No 141
>cd08397 C2_PI3K_class_III C2 domain present in class III phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. These are the only domains identified in the class III PI3Ks present in this cd. In addition some PI3Ks contain a Ras-binding domain and/or a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Ty
Probab=94.62 E-value=0.18 Score=42.32 Aligned_cols=70 Identities=13% Similarity=0.177 Sum_probs=48.0
Q ss_pred CCCeEEEEEE--CCc---CeEEeEeecCCCCCCeeceEEEEEecCCCccCCCcEEEEEEEecCCC-CCceeEEEEEeC
Q 047341 25 RMQTYALVWI--DSS---TKLCTRVDRAGAESPIWNEKFLFKVTPEFLSSETSAISVEIYASGYL-RDYLIGTVRFLV 96 (254)
Q Consensus 25 ~~DPYV~V~l--~~~---~k~rTkv~k~gt~NP~WNE~f~F~v~~~~l~~~~~~L~veV~D~d~~-~D~~LG~~~IpL 96 (254)
..|-||.+.+ ++. ....|+... -+..+.|||-+.|+|.-..+. ....|.|.||+.... ....||.+.++|
T Consensus 29 ~~~l~V~~~l~~~~~~L~~pv~T~~~~-f~~~~~WnEwl~fpI~i~dLP-~~a~L~iti~~~~~~~~~~~vg~~~~~l 104 (159)
T cd08397 29 NSDLFVTCQVFDDGKPLTLPVQTSYKP-FKNRRNWNEWLTLPIKYSDLP-RNSQLAITIWDVSGTGKAVPFGGTTLSL 104 (159)
T ss_pred CCCEEEEEEEEECCEeccCcEEccccC-CCCCcccceeEEcccchhcCC-hhheEEEEEEEecCCCCceEEEEEEEee
Confidence 4788888876 222 122443332 356788999999998764431 368999999998733 456889888876
No 142
>PF15625 CC2D2AN-C2: CC2D2A N-terminal C2 domain
Probab=94.37 E-value=0.23 Score=41.84 Aligned_cols=72 Identities=22% Similarity=0.266 Sum_probs=56.3
Q ss_pred CCCeEEEEEECCcCeEEeEeecC-CCCCCeeceEEEEEecCCCccCCCcEEEEEEEecCCCCCceeEEEEEeCccccc
Q 047341 25 RMQTYALVWIDSSTKLCTRVDRA-GAESPIWNEKFLFKVTPEFLSSETSAISVEIYASGYLRDYLIGTVRFLVSNISL 101 (254)
Q Consensus 25 ~~DPYV~V~l~~~~k~rTkv~k~-gt~NP~WNE~f~F~v~~~~l~~~~~~L~veV~D~d~~~D~~LG~~~IpL~~l~~ 101 (254)
+..-|++|.++++...+|+...- ....-.+||.|.+.+.. -...|.|+||......+.+|+++.||+-....
T Consensus 36 ~~~~~ikl~~N~k~V~~T~~~~l~~dF~v~f~~~f~v~i~~-----~Pesi~l~i~E~~~~~~~~la~v~vpvP~~~~ 108 (168)
T PF15625_consen 36 KTRYYIKLFFNDKEVSRTRSRPLWSDFRVHFNEIFNVQITR-----WPESIKLEIYEKSGLSDRLLAEVFVPVPGSTV 108 (168)
T ss_pred heeEEEEEEECCEEEEeeeeEecCCCeEEeccCEEEEEEec-----CCCEEEEEEEEccCccceEEEEEEeeCCCCcc
Confidence 45779999999887677765432 23335678999999976 37899999999888889999999999876543
No 143
>PF12416 DUF3668: Cep120 protein; InterPro: IPR022136 This domain family is found in eukaryotes, and is typically between 75 and 114 amino acids in length.
Probab=94.21 E-value=0.84 Score=42.94 Aligned_cols=124 Identities=14% Similarity=0.158 Sum_probs=89.3
Q ss_pred EEEEEEeeeCCCCCCCCCCCCCeEEEEEECCcCeEEeEeecCCCCCCeeceEEEEEecCCCc---cCCCcEEEEEEEecC
Q 047341 6 LEIILISAQGLKSPSSKMRRMQTYALVWIDSSTKLCTRVDRAGAESPIWNEKFLFKVTPEFL---SSETSAISVEIYASG 82 (254)
Q Consensus 6 L~V~VisA~~L~~~~d~~G~~DPYV~V~l~~~~k~rTkv~k~gt~NP~WNE~f~F~v~~~~l---~~~~~~L~veV~D~d 82 (254)
+.|.|+.|++.+.. .+..-++...+++. ...|.... ++..|.||..+.+.++...+ ..+...|.+++|..+
T Consensus 2 ivl~i~egr~F~~~----~~~~~vv~a~~ng~-~l~TDpv~-~~~~p~f~teL~WE~Dr~~l~~~r~~~tPiKl~c~a~~ 75 (340)
T PF12416_consen 2 IVLSILEGRNFPQR----PRHPIVVEAKFNGE-SLETDPVP-HTESPQFNTELAWECDRKALKQHRLQRTPIKLQCFAVD 75 (340)
T ss_pred EEEEEecccCCCCC----CCccEEEEEEeCCc-eeeecCCC-CCCCceeecceeeeccHHHHHHhhccCCceEEEEEEec
Confidence 56889999998765 13566788888876 45665443 48899999999998876322 124677999999987
Q ss_pred --CCCCceeEEEEEeCccc---cccCCCCCCeeEEEEeeCCCC---CcceEEEEEEEEEeCCC
Q 047341 83 --YLRDYLIGTVRFLVSNI---SLSVATKTPSFTAFQIRRPSG---RFQGVLSIGSMLIDGSD 137 (254)
Q Consensus 83 --~~~D~~LG~~~IpL~~l---~~~~~~~~~~~~~~~L~~~~g---~~~G~I~lsl~f~p~~~ 137 (254)
....+.||.+-++|... ..+. ......||+|..-+. +.+=+|.+.+...+.+.
T Consensus 76 ~~~~~re~iGyv~LdLRsa~~~~~~~--~~~~~~W~~LL~~~~~y~~~KPEl~l~l~ie~~~~ 136 (340)
T PF12416_consen 76 GSTGKRESIGYVVLDLRSAVVPQEKN--QKQKPKWYKLLSSSSKYKKHKPELLLSLSIEDDSK 136 (340)
T ss_pred CCCCcceeccEEEEEccccccccccc--cccCCCeeEccccccccccCCccEEEEEEEecccc
Confidence 44578999999999887 3321 135678999986422 34568999998887643
No 144
>PF14429 DOCK-C2: C2 domain in Dock180 and Zizimin proteins; PDB: 3L4C_A.
Probab=93.88 E-value=0.28 Score=41.67 Aligned_cols=57 Identities=11% Similarity=0.226 Sum_probs=35.1
Q ss_pred eEEeEeecCCCCCCeeceEEEEEecCCCccCCCcEEEEEEEecCC--CC--CceeEEEEEeCcc
Q 047341 39 KLCTRVDRAGAESPIWNEKFLFKVTPEFLSSETSAISVEIYASGY--LR--DYLIGTVRFLVSN 98 (254)
Q Consensus 39 k~rTkv~k~gt~NP~WNE~f~F~v~~~~l~~~~~~L~veV~D~d~--~~--D~~LG~~~IpL~~ 98 (254)
.+.|.|... ..+|.|+|+|.+.++... .+...|.|.+++... .+ +..+|-+.+||-+
T Consensus 60 ~~~S~v~yh-~k~P~f~deiKi~LP~~l--~~~~HLlFtf~h~s~~~~~~~~~~~g~a~lpL~~ 120 (184)
T PF14429_consen 60 SYYSSVYYH-NKNPQFNDEIKIQLPPDL--FPKHHLLFTFYHVSCKESKEKSKPFGYAFLPLMD 120 (184)
T ss_dssp -EE----TT--SS-EEEEEEEEEE-CCC--CTTEEEEEEEEE---SSSS-SS-EEEEEEEESB-
T ss_pred EEEEEEEec-CCCCCccEEEEEEcCchh--cccEEEEEEEEeeccccccCccceeEEEEEEeee
Confidence 456666654 689999999999998753 267899999999762 12 2699999999866
No 145
>cd08687 C2_PKN-like C2 domain in Protein kinase C-like (PKN) proteins. PKN is a lipid-activated serine/threonine kinase. It is a member of the protein kinase C (PKC) superfamily, but lacks a C1 domain. There are at least 3 different isoforms of PKN (PRK1/PKNalpha/PAK1; PKNbeta, and PRK2/PAK2/PKNgamma). The C-terminal region contains the Ser/Thr type protein kinase domain, while the N-terminal region of PKN contains three antiparallel coiled-coil (ACC) finger domains which are relatively rich in charged residues and contain a leucine zipper-like sequence. These domains binds to the small GTPase RhoA. Following these domains is a C2-like domain. Its C-terminal part functions as an auto-inhibitory region. PKNs are not activated by classical PKC activators such as diacylglycerol, phorbol ester or Ca2+, but instead are activated by phospholipids and unsaturated fatty acids. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 struct
Probab=93.67 E-value=0.59 Score=35.98 Aligned_cols=86 Identities=10% Similarity=0.146 Sum_probs=58.1
Q ss_pred CCCCeEEEEEECCcCeEEeEeecCCCCCCeeceEEEEEecCCCccCCCcEEEEEEEecCCCCCceeEEEEEeCccccccC
Q 047341 24 RRMQTYALVWIDSSTKLCTRVDRAGAESPIWNEKFLFKVTPEFLSSETSAISVEIYASGYLRDYLIGTVRFLVSNISLSV 103 (254)
Q Consensus 24 G~~DPYV~V~l~~~~k~rTkv~k~gt~NP~WNE~f~F~v~~~~l~~~~~~L~veV~D~d~~~D~~LG~~~IpL~~l~~~~ 103 (254)
|..+..|++.++......|.-.. -.+..|+++|.|.+.. ...|.|.||=.|. -.+=|...+.|.+...+
T Consensus 7 ~~~eV~avLklDn~~VgqT~Wk~--~s~q~WDQ~Fti~LdR------sRELEI~VywrD~--RslCav~~lrLEd~~~~- 75 (98)
T cd08687 7 GCSEVSAVLKLDNTVVGQTQWKP--KSNQAWDQSFTLELER------SRELEIAVYWRDW--RSLCAVKFLKLEDERHE- 75 (98)
T ss_pred cccceEEEEEEcCeEEeeccccc--cccccccceeEEEeec------ccEEEEEEEEecc--hhhhhheeeEhhhhccc-
Confidence 45688899999876556675432 4689999999999985 7999999997653 12445556667663211
Q ss_pred CCCCCeeEEEEeeCCCCCcceEEEEEEEE
Q 047341 104 ATKTPSFTAFQIRRPSGRFQGVLSIGSML 132 (254)
Q Consensus 104 ~~~~~~~~~~~L~~~~g~~~G~I~lsl~f 132 (254)
...+ -.++|.+...+.|
T Consensus 76 -------~~~~-----lepqg~l~~ev~f 92 (98)
T cd08687 76 -------VQLD-----MEPQLCLVAELTF 92 (98)
T ss_pred -------ceec-----cccccEEEEEEEe
Confidence 1222 2367777777776
No 146
>cd08695 C2_Dock-B C2 domains found in Dedicator Of CytoKinesis (Dock) class B proteins. Dock-B is one of 4 classes of Dock family proteins. The members here include: Dock3/MOCA (modifier of cell adhesion) and Dock4. Most of these members have been shown to be GEFs specific for Rac, although Dock4 has also been shown to interact indirectly with the Ras family GTPase Rap1, probably through Rap regulatory proteins. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-B members contain a SH3 domain upstream of the C2 domain and a proline-rich region downstream. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold int
Probab=93.37 E-value=0.52 Score=40.76 Aligned_cols=57 Identities=18% Similarity=0.192 Sum_probs=42.9
Q ss_pred CeEEeEeecCCCCCCeeceEEEEEecCCCccCCCcEEEEEEEecCCC--CC-ceeEEEEEeCc
Q 047341 38 TKLCTRVDRAGAESPIWNEKFLFKVTPEFLSSETSAISVEIYASGYL--RD-YLIGTVRFLVS 97 (254)
Q Consensus 38 ~k~rTkv~k~gt~NP~WNE~f~F~v~~~~l~~~~~~L~veV~D~d~~--~D-~~LG~~~IpL~ 97 (254)
..++|.|... ..+|.|||++.+.|+.+.. ....|.|++++.... ++ ..+|-+.+||-
T Consensus 53 se~~S~V~yH-~~~P~W~EtiKi~lP~~~~--~~~HL~FtfrH~S~~~k~~~~pfg~s~lpL~ 112 (189)
T cd08695 53 SEYRSFVLYH-NNSPRWNETIKLPIPIDKF--RGSHLRFEFRHCSTKDKGEKKLFGFSFVPLM 112 (189)
T ss_pred ceEEEEEEEc-CCCCCCceeEEEecChhhC--CCeeEEEEEEEeeeccCCCCCceEEEEEeec
Confidence 3567877654 7899999999999988643 678899988875521 22 67888888874
No 147
>cd08694 C2_Dock-A C2 domains found in Dedicator Of CytoKinesis (Dock) class A proteins. Dock-A is one of 4 classes of Dock family proteins. The members here include: Dock180/Dock1, Dock2, and Dock5. Most of these members have been shown to be GEFs specific for Rac. Dock5 has not been well characterized to date, but most likely also is a GEF specific for Rac. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-A members contain a proline-rich region and a SH3 domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=93.14 E-value=0.51 Score=41.01 Aligned_cols=57 Identities=12% Similarity=0.148 Sum_probs=42.9
Q ss_pred CeEEeEeecCCCCCCeeceEEEEEecCCCccCCCcEEEEEEEecCC--CCC---ceeEEEEEeCc
Q 047341 38 TKLCTRVDRAGAESPIWNEKFLFKVTPEFLSSETSAISVEIYASGY--LRD---YLIGTVRFLVS 97 (254)
Q Consensus 38 ~k~rTkv~k~gt~NP~WNE~f~F~v~~~~l~~~~~~L~veV~D~d~--~~D---~~LG~~~IpL~ 97 (254)
..++|.|..- ..+|.|||++.+.|+.+.. ....|.|.+++... .+| ..+|-+.+||-
T Consensus 53 se~~S~V~Yh-~~~P~W~EtIKl~lP~~~~--~~~HL~FtfrH~S~~~~kd~~e~pfg~s~lpL~ 114 (196)
T cd08694 53 DEYKSVIYYQ-VDKPKWFETFKVAIPIEDF--KSSHLRFTFKHRSSNEAKDKSEKPFALSFVKLM 114 (196)
T ss_pred eeEEEEEEee-cCCCCCceeEEEecChhhC--CCeEEEEEEEeeccccccCCCCCceEEEEEeee
Confidence 3568877553 6899999999999987643 68899999987642 123 67888888874
No 148
>PF00792 PI3K_C2: Phosphoinositide 3-kinase C2; InterPro: IPR002420 Phosphatidylinositol 3-kinase (PI3-kinase) (2.7.1.137 from EC) is an enzyme that phosphorylates phosphoinositides on the 3-hydroxyl group of the inositol ring. The usually N-terminal C2 domain interacts mainly with the scaffolding helical domain of the enzyme, and exhibits only minor interactions with the catalytic domain []. The domain consists of two four-stranded antiparallel beta-sheets that form a beta-sandwich. Isolated C2 domain binds multilamellar phospholipid vesicles which suggests that this domain could play a role in membrane association. Membrane attachment by C2 domains is typically mediated by the loops connecting beta-strand regions that in other C2 domain-containing proteins are calcium-binding region; GO: 0016303 1-phosphatidylinositol-3-kinase activity, 0046854 phosphatidylinositol phosphorylation, 0048015 phosphatidylinositol-mediated signaling, 0005942 phosphatidylinositol 3-kinase complex; PDB: 1E8W_A 1E8X_A 1E7V_A 1E90_A 1E7U_A 3L54_A 1E8Z_A 2CHX_A 3ML8_A 3OAW_A ....
Probab=92.21 E-value=0.88 Score=36.91 Aligned_cols=57 Identities=16% Similarity=0.255 Sum_probs=37.5
Q ss_pred EeEeecCCCCCCeeceEEEEEecCCCccCCCcEEEEEEEecCCCC-C----ceeEEEEEeCcc
Q 047341 41 CTRVDRAGAESPIWNEKFLFKVTPEFLSSETSAISVEIYASGYLR-D----YLIGTVRFLVSN 98 (254)
Q Consensus 41 rTkv~k~gt~NP~WNE~f~F~v~~~~l~~~~~~L~veV~D~d~~~-D----~~LG~~~IpL~~ 98 (254)
.|+...-...++.|||.+.|++.-..+. ....|.|.||...... . ..||.+.++|=+
T Consensus 23 ~T~~~~~~~~~~~W~e~l~F~i~i~~LP-r~a~L~~~l~~~~~~~~~~~~~~~lgw~n~~lFd 84 (142)
T PF00792_consen 23 STSYVPFSFSRPKWDEWLTFPIPISDLP-REARLCFTLYGVDSKKKSKKKKVPLGWVNLPLFD 84 (142)
T ss_dssp E-S-EESS-SSEEEEEEEEEEEEGGGS--TTEEEEEEEEEEECSTTT--EEEEEEEEEEESB-
T ss_pred eccccccccccceEeeEEEeecChHHCC-hhHeEEEEEEEecCCCccccceeEEEEEEEEeEC
Confidence 5554432126999999999987543331 4678999999877433 3 689998888744
No 149
>cd08679 C2_DOCK180_related C2 domains found in Dedicator Of CytoKinesis 1 (DOCK 180) and related proteins. Dock180 was first identified as an 180kd proto-oncogene product c-Crk-interacting protein involved in actin cytoskeletal changes. It is now known that it has Rac-specific GEF activity, but lacks the conventional Dbl homology (DH) domain. There are 10 additional related proteins that can be divided into four classes based on sequence similarity and domain organization: Dock-A which includes Dock180/Dock1, Dock2, and Dock5; Dock-B which includes Dock3/MOCA (modifier of cell adhesion) and Dock4; Dock-C which includes Dock6/Zir1, Dock7/Zir2, and Dock8/Zir3; and Dock-D, which includes Dock9/Zizimin1, Dock10/Zizimin3, and Dock11/Zizimin2/ACG (activated Cdc42-associated GEF). Most of members of classes Dock-A and Dock-B are the GEFs specific for Rac. Those of Dock-D are Cdc42-specific GEFs while those of Dock-C are the GEFs for both. All Dock180-related proteins have two common homolo
Probab=89.55 E-value=1.6 Score=36.96 Aligned_cols=55 Identities=9% Similarity=0.226 Sum_probs=40.3
Q ss_pred EEeEeecCCCCCCeeceEEEEEecCCCccCCCcEEEEEEEecCCC------CCceeEEEEEeCcc
Q 047341 40 LCTRVDRAGAESPIWNEKFLFKVTPEFLSSETSAISVEIYASGYL------RDYLIGTVRFLVSN 98 (254)
Q Consensus 40 ~rTkv~k~gt~NP~WNE~f~F~v~~~~l~~~~~~L~veV~D~d~~------~D~~LG~~~IpL~~ 98 (254)
++| +... ..+|.|+|+|.+.++... .+...|.|++++.... ....+|-+.+||-+
T Consensus 55 ~~s-v~~~-~k~p~f~deiKi~LP~~l--~~~~HLlFtf~hv~~~~~~~~~~~~~~g~a~lpL~~ 115 (178)
T cd08679 55 YTS-VVYY-HKNPVFNDEIKIQLPADL--TPQHHLLFTFYHVSSKKKQGDKEETPFGYAFLPLMD 115 (178)
T ss_pred EEE-EEEc-CCCCCCceeEEEecCCcc--CCCeEEEEEEEccccccccCCCccceEEEEEEeccc
Confidence 344 4434 389999999999997643 2578999999987622 25688988888864
No 150
>smart00142 PI3K_C2 Phosphoinositide 3-kinase, region postulated to contain C2 domain. Outlier of C2 family.
Probab=87.37 E-value=5.1 Score=30.61 Aligned_cols=74 Identities=18% Similarity=0.210 Sum_probs=45.1
Q ss_pred EEEEEEeeeCCCCCCCCCCCCCeEEEEEE--CCc---CeEEeEeecCCCCCCeeceEEEEEecCCCccCCCcEEEEEEEe
Q 047341 6 LEIILISAQGLKSPSSKMRRMQTYALVWI--DSS---TKLCTRVDRAGAESPIWNEKFLFKVTPEFLSSETSAISVEIYA 80 (254)
Q Consensus 6 L~V~VisA~~L~~~~d~~G~~DPYV~V~l--~~~---~k~rTkv~k~gt~NP~WNE~f~F~v~~~~l~~~~~~L~veV~D 80 (254)
+.+.+..++++.-. ......+-||.+.+ ++. ....|+.. .....+.|||-+.|++.-..+. ....|.|.||+
T Consensus 13 ~~~~~~~~~~~~l~-~~~~~~~l~v~~~l~~g~~~l~~pv~t~~~-~~~~~~~Wnewl~f~i~i~~LP-r~a~L~~~i~~ 89 (100)
T smart00142 13 LVITIALIHGIPLN-WSRDYSDLYVEIQLYHGGKLLCLPVSTSYK-PFFPSVKWNEWLTFPIQISDLP-REARLCITIYE 89 (100)
T ss_pred eEEEEEEeeCCCcc-cccCcceEEEEEEEEECCEEccCcEEeccc-CCCCCcccceeEEccCchhcCC-hhhEEEEEEEE
Confidence 55666777666543 22112478888876 222 12244432 3355699999999987654331 36789999998
Q ss_pred cC
Q 047341 81 SG 82 (254)
Q Consensus 81 ~d 82 (254)
..
T Consensus 90 ~~ 91 (100)
T smart00142 90 VK 91 (100)
T ss_pred ee
Confidence 54
No 151
>cd08696 C2_Dock-C C2 domains found in Dedicator Of CytoKinesis (Dock) class C proteins. Dock-C is one of 4 classes of Dock family proteins. The members here include: Dock6/Zir1, Dock7/Zir2, and Dock8/Zir3. Dock-C members are GEFs for both Rac and Cdc42. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-C members contain a functionally uncharacterized domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strand
Probab=85.41 E-value=3.7 Score=35.14 Aligned_cols=57 Identities=16% Similarity=0.239 Sum_probs=41.9
Q ss_pred CeEEeEeecCCCCCCeeceEEEEEecCCCccCCCcEEEEEEEecCCC----C---CceeEEEEEeCc
Q 047341 38 TKLCTRVDRAGAESPIWNEKFLFKVTPEFLSSETSAISVEIYASGYL----R---DYLIGTVRFLVS 97 (254)
Q Consensus 38 ~k~rTkv~k~gt~NP~WNE~f~F~v~~~~l~~~~~~L~veV~D~d~~----~---D~~LG~~~IpL~ 97 (254)
..+.|.|... +.+|.|+|.|.+.++... .+...|.|+.++.... + ...+|-+.+||-
T Consensus 54 ~~~~S~V~yH-nk~P~f~DEiKi~LP~~l--~~~hHLlFtF~Hvs~~~k~~~~~~e~~~Gys~lPL~ 117 (179)
T cd08696 54 TEAYTAVTYH-NKSPDFYDEIKIKLPADL--TDNHHLLFTFYHISCQKKQEGGSVETPIGYTWLPLL 117 (179)
T ss_pred eeEEEEEEEe-CCCCcccceEEEEcCCCC--CCCeEEEEEEEEeeccccccCCCccceEEEEEEeee
Confidence 3467777664 789999999999988743 2578899999986521 1 356888888874
No 152
>KOG1327 consensus Copine [Signal transduction mechanisms]
Probab=81.42 E-value=4 Score=40.50 Aligned_cols=59 Identities=24% Similarity=0.298 Sum_probs=44.9
Q ss_pred EEeEeecCCCCCCeeceEEEEEecCCCccCCCcEEEEEEEecCC-----CCCceeEEEEEeCccccccC
Q 047341 40 LCTRVDRAGAESPIWNEKFLFKVTPEFLSSETSAISVEIYASGY-----LRDYLIGTVRFLVSNISLSV 103 (254)
Q Consensus 40 ~rTkv~k~gt~NP~WNE~f~F~v~~~~l~~~~~~L~veV~D~d~-----~~D~~LG~~~IpL~~l~~~~ 103 (254)
.||.++++ .+||.|-++|.+..-- +..+.|.|+++|.+. ...+|+|++.-.+..+....
T Consensus 43 ~rte~i~~-~~~p~f~~~~~l~y~f----E~vQ~l~~~~~~~~~~~~~l~~~dflg~~~c~l~~ivs~~ 106 (529)
T KOG1327|consen 43 GRTEVIRN-VLNPFFTKKFLLQYRF----EKVQLLRFEVYDIDSRTPDLSSADFLGTAECTLSQIVSSS 106 (529)
T ss_pred cceeeeec-cCCccceeeechhhee----eeeeeEEEEEeecCCccCCcchhcccceeeeehhhhhhhh
Confidence 37777775 8999999988765432 146889999999873 24789999999998876544
No 153
>cd08697 C2_Dock-D C2 domains found in Dedicator Of CytoKinesis (Dock) class C proteins. Dock-D is one of 4 classes of Dock family proteins. The members here include: Dock9/Zizimin1, Dock10/Zizimin3, and Dock11/Zizimin2/ACG (activated Cdc42-associated GEF). Dock-D are Cdc42-specific GEFs. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-D members contain a functionally uncharacterized domain and a PH domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The PH domain broadly binds to phospholipids and is thought to be involved in targeting the plasma membrane. The C2 domain was first identified in PKC. C2 domains fold into an 8-stande
Probab=79.91 E-value=8.7 Score=33.09 Aligned_cols=57 Identities=9% Similarity=0.159 Sum_probs=42.1
Q ss_pred eEEeEeecCCCCCCeeceEEEEEecCCCccCCCcEEEEEEEecCCC----------CCceeEEEEEeCcc
Q 047341 39 KLCTRVDRAGAESPIWNEKFLFKVTPEFLSSETSAISVEIYASGYL----------RDYLIGTVRFLVSN 98 (254)
Q Consensus 39 k~rTkv~k~gt~NP~WNE~f~F~v~~~~l~~~~~~L~veV~D~d~~----------~D~~LG~~~IpL~~ 98 (254)
.+.|.|... +.+|.|+|++.+.++... .+...|.|+.|+.... ....+|-+.+||-.
T Consensus 57 ~~~s~V~yh-~k~P~f~dEiKI~LP~~l--~~~hHLlFtFyHvsc~~~~k~~~~~~~e~~~Gys~lPLl~ 123 (185)
T cd08697 57 SAYAAVLHH-NQNPEFYDEIKIELPTQL--HEKHHLLFTFYHVSCDINKKGKKKDGVETPVGYAWLPLLK 123 (185)
T ss_pred EEEEEEEEc-CCCCccceeEEEecCCcC--CCCeeEEEEEEeeccccccccccCCCccceEEEEEEeeec
Confidence 457777765 699999999999988753 2677899999987521 13568888888744
No 154
>KOG1329 consensus Phospholipase D1 [Lipid transport and metabolism]
Probab=76.02 E-value=4 Score=42.69 Aligned_cols=102 Identities=13% Similarity=0.035 Sum_probs=72.1
Q ss_pred CCeEEEEEECCcCeEEeEeecCCCCCCeeceEEEEEecCCCccCCCcEEEEEEEecCCCC-CceeEEEEEeCccccccCC
Q 047341 26 MQTYALVWIDSSTKLCTRVDRAGAESPIWNEKFLFKVTPEFLSSETSAISVEIYASGYLR-DYLIGTVRFLVSNISLSVA 104 (254)
Q Consensus 26 ~DPYV~V~l~~~~k~rTkv~k~gt~NP~WNE~f~F~v~~~~l~~~~~~L~veV~D~d~~~-D~~LG~~~IpL~~l~~~~~ 104 (254)
.++|+.+.+....-.+|....+.-.+|.|.+.|.....- ....+.+.|-+.+..+ -..+|.+.+|.-.+..+..
T Consensus 138 ~e~Ylt~~l~~~~~~~t~~~~~f~e~s~~~f~~~~~~~h-----~~g~v~~~~~~~~~~G~s~~w~~v~~s~~~~~~~~~ 212 (887)
T KOG1329|consen 138 LENYLTVVLHKARYRRTHVIYEFLENSRWSFSFDIGFAH-----KAGYVIFRVKGARVPGWSKRWGRVKISFLQYCSGHR 212 (887)
T ss_pred ccchheeeechhhhhchhhhhcccccchhhhhccccccc-----cccEEEEeecCCccccceeEEEEeccchhhhhcccc
Confidence 589999999765555776665534899999988777654 4678888888888666 8899999999988877543
Q ss_pred CCCCeeEEEEeeCCCCCc---ceEEEEEEEEEeCC
Q 047341 105 TKTPSFTAFQIRRPSGRF---QGVLSIGSMLIDGS 136 (254)
Q Consensus 105 ~~~~~~~~~~L~~~~g~~---~G~I~lsl~f~p~~ 136 (254)
...++.+...++++ .-.+.+.+.|.+..
T Consensus 213 ----~~~~~~Il~~d~~~~~~~~~~~~~~~~~~~~ 243 (887)
T KOG1329|consen 213 ----IGGWFPILDNDGKPHQKGSNESLRLGFTPME 243 (887)
T ss_pred ----ccceeeeeccCCccccCCcccceEEeeEeec
Confidence 23456665433322 22566667777654
No 155
>PF14924 DUF4497: Protein of unknown function (DUF4497)
Probab=68.06 E-value=20 Score=27.92 Aligned_cols=77 Identities=18% Similarity=0.188 Sum_probs=47.4
Q ss_pred EEEEEecCCCccC--CCcEEEEEEEecC----CCCCceeEEEEEeCccccccCC----------CCCCeeEEEEeeCCCC
Q 047341 57 KFLFKVTPEFLSS--ETSAISVEIYASG----YLRDYLIGTVRFLVSNISLSVA----------TKTPSFTAFQIRRPSG 120 (254)
Q Consensus 57 ~f~F~v~~~~l~~--~~~~L~veV~D~d----~~~D~~LG~~~IpL~~l~~~~~----------~~~~~~~~~~L~~~~g 120 (254)
...|.+++..+.. ....|.+.+++.. .....+||.+.|++.+.+..-. ........|+|.++.+
T Consensus 12 ScLF~~~~~~L~~~l~~~pl~i~~~~~~~~~~~~~~~liG~~~i~l~~~~~~i~~~~~~~~~~p~s~~~k~~f~L~~~~~ 91 (112)
T PF14924_consen 12 SCLFALTPEDLQQSLSSFPLYIVVKKVPPGFPTPPPMLIGSCPISLAEAFNRILKDSAECNGQPSSKTIKGTFPLFDENG 91 (112)
T ss_pred EEEEEcCHHHHHHHhhCCceEEEEEecCCCCCCCccceeeEEEecHHHHHHHHHHHHHhhccCCCchhhcceeEeecCCC
Confidence 3455555433210 1344566555543 2345799999999987652211 0011246789998888
Q ss_pred CcceEEEEEEEEE
Q 047341 121 RFQGVLSIGSMLI 133 (254)
Q Consensus 121 ~~~G~I~lsl~f~ 133 (254)
...|+|.+.+++.
T Consensus 92 ~~~G~I~l~iRLs 104 (112)
T PF14924_consen 92 NPVGEISLYIRLS 104 (112)
T ss_pred ceeeeEEEEEEEe
Confidence 9999999998875
No 156
>KOG4269 consensus Rac GTPase-activating protein BCR/ABR [Signal transduction mechanisms]
Probab=63.04 E-value=3.6 Score=43.14 Aligned_cols=85 Identities=22% Similarity=0.227 Sum_probs=63.5
Q ss_pred ccEEEEEEEeeeCCCCCCCCCCCCCeEEEEEECC----cCeEEeEeecCCCCCCeeceEEEEEecCCCccCCCcEEEEEE
Q 047341 3 TQILEIILISAQGLKSPSSKMRRMQTYALVWIDS----STKLCTRVDRAGAESPIWNEKFLFKVTPEFLSSETSAISVEI 78 (254)
Q Consensus 3 ~g~L~V~VisA~~L~~~~d~~G~~DPYV~V~l~~----~~k~rTkv~k~gt~NP~WNE~f~F~v~~~~l~~~~~~L~veV 78 (254)
+|.+.+.+.+|..|+.- ..-||...++. ..+.+|+++++ +..|.||+.|..++-. .+.+.|+.
T Consensus 758 ygflh~~vhsat~lkqs------~~lY~Td~v~e~~~~~s~~st~~iad-T~~~~~npe~hv~~~~------sqS~r~~~ 824 (1112)
T KOG4269|consen 758 YGFLHVIVHSATGLKQS------RNLYCTDEVDEFGYFVSKASTRVIAD-TAEPQWNPEKHVPVIE------SQSSRLEK 824 (1112)
T ss_pred ccceeeeeccccccccc------cceeeehhhhhhccccccccceeeec-ccCCCCChhcccchhh------ccccchhh
Confidence 57788999999999875 47788887742 35779999986 9999999999988864 56777877
Q ss_pred EecCC-----------CCCceeEEEEEeCcccc
Q 047341 79 YASGY-----------LRDYLIGTVRFLVSNIS 100 (254)
Q Consensus 79 ~D~d~-----------~~D~~LG~~~IpL~~l~ 100 (254)
+++.. ..+...|.+++.+.-..
T Consensus 825 ~ek~~~~~k~~~~~~~~~~~~~~~~~~~l~~~~ 857 (1112)
T KOG4269|consen 825 TEKSTPVEKLIDSHSQNSQNEEKRSRMKLDPQP 857 (1112)
T ss_pred hcccchHHHhhhccchhhcccccccccccCccc
Confidence 77652 13566777777765433
No 157
>PF14186 Aida_C2: Cytoskeletal adhesion; PDB: 2QZQ_A 2QZ5_A.
Probab=60.33 E-value=45 Score=27.74 Aligned_cols=93 Identities=16% Similarity=0.095 Sum_probs=52.2
Q ss_pred EEEEEEEeeeCCCCCCCCCCCCCeEEEEEEC-Cc-----CeEEeEeecC-CCCCCeeceEEEEEecCCCccCCCcEEEEE
Q 047341 5 ILEIILISAQGLKSPSSKMRRMQTYALVWID-SS-----TKLCTRVDRA-GAESPIWNEKFLFKVTPEFLSSETSAISVE 77 (254)
Q Consensus 5 ~L~V~VisA~~L~~~~d~~G~~DPYV~V~l~-~~-----~k~rTkv~k~-gt~NP~WNE~f~F~v~~~~l~~~~~~L~ve 77 (254)
.|.|.|.+.. |+... ...|||+.|++- .+ ..+.|.+... .+..=.||....++.+-+.+. +...|.||
T Consensus 14 ~l~v~Iekig-lkda~---~~~~P~~tVSV~D~~G~~ve~~QdTpv~~~~~~~yv~f~~~v~lqtple~lp-~Gaai~fE 88 (147)
T PF14186_consen 14 YLSVFIEKIG-LKDAS---QYIDPYFTVSVKDGNGKDVEPPQDTPVGSRREDNYVHFNNTVHLQTPLEKLP-KGAAIFFE 88 (147)
T ss_dssp EEEEEEEEEE--TTGG---G-EEEEEEEEEE-TTS-BSS--EE--S-SEEETTEEEEEEEEE-SS-GGGS--TT-EEEEE
T ss_pred eEEEEEEEEE-ECChH---HccCCeEEEEEECCCCCCccccccCCCcccccCCEEEEcccEEEcCCHHHCC-CceEEEEE
Confidence 4677777766 77652 348999999993 21 2345665421 134455687666654443332 46789999
Q ss_pred EEecCCCCC--ceeEEEEEeCcccccc
Q 047341 78 IYASGYLRD--YLIGTVRFLVSNISLS 102 (254)
Q Consensus 78 V~D~d~~~D--~~LG~~~IpL~~l~~~ 102 (254)
+.++..... ...+.+-++++++..+
T Consensus 89 ~kH~K~kk~k~S~kcw~fme~dei~~g 115 (147)
T PF14186_consen 89 FKHYKPKKKKTSTKCWAFMELDEIKPG 115 (147)
T ss_dssp EEEEETTTTCEEEEEEEEEEGGG--SE
T ss_pred EEeeeccceeeeeeEEEEEEhhhccCC
Confidence 999774333 3578888999887655
No 158
>PTZ00447 apical membrane antigen 1-like protein; Provisional
Probab=55.56 E-value=1.5e+02 Score=28.36 Aligned_cols=99 Identities=11% Similarity=0.147 Sum_probs=63.8
Q ss_pred CCCeEEEEEECCcCeEEeEeecCCCCCC-eeceEEEEEecCCCccCCCcEEEEEEEecCCCCCceeEEEEEeCcc-cccc
Q 047341 25 RMQTYALVWIDSSTKLCTRVDRAGAESP-IWNEKFLFKVTPEFLSSETSAISVEIYASGYLRDYLIGTVRFLVSN-ISLS 102 (254)
Q Consensus 25 ~~DPYV~V~l~~~~k~rTkv~k~gt~NP-~WNE~f~F~v~~~~l~~~~~~L~veV~D~d~~~D~~LG~~~IpL~~-l~~~ 102 (254)
...-|+.++.+.. .++|..+.-+-.+- .-.+.....+.. -+.+|.|.+|-....+..-||.+.|.++. +..+
T Consensus 73 ~khiyIef~~Gr~-d~TT~~IpTsKK~RI~IqqRV~IkIRQ-----cDnTLkI~lfKKkLvkk~hIgdI~InIn~dIIdk 146 (508)
T PTZ00447 73 YKHIYIIFSTDKY-DFTTDEIPTNKKNRIHIDQRVDIKIRQ-----CDETLRVDLFTTKLTKKVHIGQIKIDINASVISK 146 (508)
T ss_pred ceeEEEEEEcCce-EEEccccccCcCceEEEeeeeeeeeee-----cCceEEEEEEeccccceeEEEEEEecccHHHHhc
Confidence 3567888887643 44553332211121 234444455543 36889999999988888999999999876 3332
Q ss_pred CCCCCCeeEEEEeeCCCCCcceEEEEEEEEE
Q 047341 103 VATKTPSFTAFQIRRPSGRFQGVLSIGSMLI 133 (254)
Q Consensus 103 ~~~~~~~~~~~~L~~~~g~~~G~I~lsl~f~ 133 (254)
. .+...||-+. ..|...+.|.+++.-+
T Consensus 147 ~---FPKnkWy~c~-kDGq~~cRIqLSFhKL 173 (508)
T PTZ00447 147 S---FPKNEWFVCF-KDGQEICKVQMSFYKI 173 (508)
T ss_pred c---CCccceEEEe-cCCceeeeEEEEehhh
Confidence 2 4567899884 4788888887765533
No 159
>KOG0694 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=53.58 E-value=9.1 Score=39.12 Aligned_cols=51 Identities=16% Similarity=0.147 Sum_probs=37.0
Q ss_pred CCCeEEEEEECCcCeEEeEeecCCCCCCeeceEEEEEecCCCccCCCcEEEEEEEecC
Q 047341 25 RMQTYALVWIDSSTKLCTRVDRAGAESPIWNEKFLFKVTPEFLSSETSAISVEIYASG 82 (254)
Q Consensus 25 ~~DPYV~V~l~~~~k~rTkv~k~gt~NP~WNE~f~F~v~~~~l~~~~~~L~veV~D~d 82 (254)
..+||+-|.+.-.+...+.+.+ .+.+|.||++|...|.. ...+.|.||...
T Consensus 27 al~~y~~v~vk~~~~~~~~~~~-~~~~~~~~~~F~~~v~~------~~~~~i~v~~~~ 77 (694)
T KOG0694|consen 27 ALQPYLAVELKVKQGAENMTKV-ELRIPELRETFHVEVVA------GGAKNIIVLLKS 77 (694)
T ss_pred hhhhhheeccceeecccccCCC-CCCCchhhhheeeeeec------CCceEEEEEecC
Confidence 4689999888633222333333 48999999999999875 678888888764
No 160
>KOG3543 consensus Ca2+-dependent activator protein [Signal transduction mechanisms]
Probab=47.90 E-value=1.6e+02 Score=30.41 Aligned_cols=114 Identities=20% Similarity=0.270 Sum_probs=70.8
Q ss_pred EEEEEEEeeeCCCCCCCCCCCCCeEEEEEECCcCeEEeEeecCCCCCCeeceEEEEEecCCCccCCCcEEEEEEEecC--
Q 047341 5 ILEIILISAQGLKSPSSKMRRMQTYALVWIDSSTKLCTRVDRAGAESPIWNEKFLFKVTPEFLSSETSAISVEIYASG-- 82 (254)
Q Consensus 5 ~L~V~VisA~~L~~~~d~~G~~DPYV~V~l~~~~k~rTkv~k~gt~NP~WNE~f~F~v~~~~l~~~~~~L~veV~D~d-- 82 (254)
.++|.|..-++|+.. ..+ .=.||+..+.+. |..|.-. ...-|.|...=-|.-.. +...+.+.+|-+.
T Consensus 342 smevvvmevqglksv-apn--rivyctmevege-klqtdqa--easkp~wgtqgdfstth-----plpvvkvklftestg 410 (1218)
T KOG3543|consen 342 SMEVVVMEVQGLKSV-APN--RIVYCTMEVEGE-KLQTDQA--EASKPKWGTQGDFSTTH-----PLPVVKVKLFTESTG 410 (1218)
T ss_pred eeeEEEeeecccccc-CCC--eeEEEEEEeccc-ccccchh--hhcCCCCCcCCCcccCC-----CCceeEEEEEeecce
Confidence 468889999999876 221 237999999874 6677543 26789999766666554 3567777787765
Q ss_pred --CCCCceeEEEEEeCccccccCCCCCCeeEEEEeeCCCCC--cceEEEEEEEEEeC
Q 047341 83 --YLRDYLIGTVRFLVSNISLSVATKTPSFTAFQIRRPSGR--FQGVLSIGSMLIDG 135 (254)
Q Consensus 83 --~~~D~~LG~~~IpL~~l~~~~~~~~~~~~~~~L~~~~g~--~~G~I~lsl~f~p~ 135 (254)
...|+-||.+-+.... +..+ ...|+...-|+.. ..=.|.+.++...+
T Consensus 411 vlaledkelgrvil~ptp----ns~k--s~ewh~mtvpknsqdqdlkiklavrmdkp 461 (1218)
T KOG3543|consen 411 VLALEDKELGRVILQPTP----NSAK--SPEWHTMTVPKNSQDQDLKIKLAVRMDKP 461 (1218)
T ss_pred eEEeechhhCeEEEecCC----CCcC--CccceeeecCCCCcCccceEEEEEeccCC
Confidence 2368899987764322 1111 2345555444332 23356666666544
No 161
>cd08406 C2B_Synaptotagmin-12 C2 domain second repeat present in Synaptotagmin 12. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 12, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 13, do not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycl
Probab=39.85 E-value=24 Score=28.43 Aligned_cols=14 Identities=7% Similarity=0.238 Sum_probs=9.3
Q ss_pred eEEEEEEEEEeCCC
Q 047341 124 GVLSIGSMLIDGSD 137 (254)
Q Consensus 124 G~I~lsl~f~p~~~ 137 (254)
|+|.|++.|.+...
T Consensus 2 G~i~~sL~Y~~~~~ 15 (136)
T cd08406 2 GEILLSLSYLPTAE 15 (136)
T ss_pred cEEEEEEEEcCCCC
Confidence 66777777766543
No 162
>PF07162 B9-C2: Ciliary basal body-associated, B9 protein; InterPro: IPR010796 Proteins in this entry include the MSK1 protein (Q9NXB0 from SWISSPROT) and other known or predicted flagellar basal body proteome components [] or cilia-containing species. Although the function is unknown, a cilia-specific role has been suggested for the poorly characterised B9 domain [, , ]. Mutations in MSK1 have been shown to cause Meckel syndrome type 1, a severe foetal development disorder that has been reported in most populations.
Probab=37.73 E-value=2.4e+02 Score=23.42 Aligned_cols=83 Identities=13% Similarity=0.165 Sum_probs=53.2
Q ss_pred EEEEEEeeeCCCCCCCCCCCCCeEEEEEEC--C-------cC-eEEeEeecCC----CCCCeeceEEEEEecCCCccCCC
Q 047341 6 LEIILISAQGLKSPSSKMRRMQTYALVWID--S-------ST-KLCTRVDRAG----AESPIWNEKFLFKVTPEFLSSET 71 (254)
Q Consensus 6 L~V~VisA~~L~~~~d~~G~~DPYV~V~l~--~-------~~-k~rTkv~k~g----t~NP~WNE~f~F~v~~~~l~~~~ 71 (254)
+.-.|.+|++... .+-||+-.+. + .. ...|.+.+.. ...-+||.-|.+.+..+.+ ..-
T Consensus 4 v~G~I~~a~~f~~-------~~l~~~y~~~~g~~W~~~~g~~~~G~Tq~~~~~~~~~~~~~~f~~P~d~~~~~~~~-~gw 75 (168)
T PF07162_consen 4 VIGEIESAEGFEE-------DNLYCRYQLVHGPDWKLISGLSLEGQTQISKSSSYGNDDVAVFNHPFDLHFKSTNP-QGW 75 (168)
T ss_pred EEEEEEEEECCCC-------CCEEEEEEEEeCCCeEECCCCcceEEcceeecCcccCCCceEEeccEEEEEEeCCC-CCC
Confidence 3446778876554 3678886663 1 23 4567666432 3457899987776554321 123
Q ss_pred cEEEEEEEecC-CCCCceeEEEEEeC
Q 047341 72 SAISVEIYASG-YLRDYLIGTVRFLV 96 (254)
Q Consensus 72 ~~L~veV~D~d-~~~D~~LG~~~IpL 96 (254)
-.|.|+||..| ..++.+.|-..+.|
T Consensus 76 P~L~l~V~~~D~~gr~~~~GYG~~~l 101 (168)
T PF07162_consen 76 PQLVLQVYSLDSWGRDRVEGYGFCHL 101 (168)
T ss_pred ceEEEEEEEEcccCCeEEeEEeEEEe
Confidence 68999999999 55688888766655
No 163
>cd08407 C2B_Synaptotagmin-13 C2 domain second repeat present in Synaptotagmin 13. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recy
Probab=34.08 E-value=37 Score=27.51 Aligned_cols=15 Identities=7% Similarity=0.231 Sum_probs=11.7
Q ss_pred ceEEEEEEEEEeCCC
Q 047341 123 QGVLSIGSMLIDGSD 137 (254)
Q Consensus 123 ~G~I~lsl~f~p~~~ 137 (254)
.|+|.|+|+|.|..+
T Consensus 1 ~Gel~~sL~Y~~~~~ 15 (138)
T cd08407 1 TGEVLLSISYLPAAN 15 (138)
T ss_pred CCEEEEEEEEeCCCC
Confidence 378888888887765
No 164
>KOG1032 consensus Uncharacterized conserved protein, contains GRAM domain [Function unknown]
Probab=33.25 E-value=54 Score=33.27 Aligned_cols=55 Identities=15% Similarity=-0.089 Sum_probs=37.8
Q ss_pred CCCCCCeEEEEEECCcCeEEeEeecCCCCCCeeceEEEEEecCCCccCCCcEEEEEEEecC
Q 047341 22 KMRRMQTYALVWIDSSTKLCTRVDRAGAESPIWNEKFLFKVTPEFLSSETSAISVEIYASG 82 (254)
Q Consensus 22 ~~G~~DPYV~V~l~~~~k~rTkv~k~gt~NP~WNE~f~F~v~~~~l~~~~~~L~veV~D~d 82 (254)
.++..+||..+...+.. .++-..-++.+|.|++.|.|+-.- + +-.+..|.++++.
T Consensus 114 ~n~~~~~~~l~~~~~ca--l~reillQGrmyis~~~icF~s~i-~---gw~~~~vIpf~eI 168 (590)
T KOG1032|consen 114 LNGVPDPEILLTDYSCA--LQREILLQGRMYISEEHICFNSNI-F---GWETKVVIPFDEI 168 (590)
T ss_pred hhcCCCcceeeeecchh--hccccccccccccccceeeecccc-c---CccceeEEeeeee
Confidence 44567899998887543 333333459999999999998654 1 3466667777765
No 165
>PF08151 FerI: FerI (NUC094) domain; InterPro: IPR012968 The ferlin gene family are characterised by multiple tandem C2 domains and a C-terminal transmembrane domain. They are found in a wide range of species and their function remains unknown, however, mutations in its two most well-characterised members, dysferlin and otoferlin, have been implicated in human disease []. This domain is present in proteins of the Ferlin family, which includes Otoferlin, Myoferlin and Dysferlin. It is often located between two C2 domains [].
Probab=32.20 E-value=1.3e+02 Score=21.87 Aligned_cols=36 Identities=17% Similarity=0.222 Sum_probs=26.2
Q ss_pred CeeEEEEeeCC---CCCcceEEEEEEEEEeCCCCCCccc
Q 047341 108 PSFTAFQIRRP---SGRFQGVLSIGSMLIDGSDLPAFDE 143 (254)
Q Consensus 108 ~~~~~~~L~~~---~g~~~G~I~lsl~f~p~~~~p~l~~ 143 (254)
....|..|..| +...+|+|.++|+.....+.+.+..
T Consensus 14 ~~~KW~~L~dP~D~~~G~kGYlKv~i~Vlg~GD~~~~~~ 52 (72)
T PF08151_consen 14 FYRKWALLTDPDDTSAGVKGYLKVDISVLGPGDEPPVEK 52 (72)
T ss_pred eEeceEEecCCCCCccCCceEEEEEEEEEcCCCcCCCCC
Confidence 34567777765 3467999999999998877554443
No 166
>KOG2419 consensus Phosphatidylserine decarboxylase [Lipid transport and metabolism]
Probab=31.46 E-value=13 Score=37.93 Aligned_cols=54 Identities=20% Similarity=0.217 Sum_probs=36.0
Q ss_pred EEEEeeeCCCCCCC---CCCCCCeEEEEEECCcCeEEeEeecCCCCCCeeceEEEEEecC
Q 047341 8 IILISAQGLKSPSS---KMRRMQTYALVWIDSSTKLCTRVDRAGAESPIWNEKFLFKVTP 64 (254)
Q Consensus 8 V~VisA~~L~~~~d---~~G~~DPYV~V~l~~~~k~rTkv~k~gt~NP~WNE~f~F~v~~ 64 (254)
++++.|.++.+..+ ..-+.+|++.+.++.+ .+||+.... +.+|+|||. .|++..
T Consensus 284 l~lI~a~~~~~i~~~~~~~f~~~~~~itsf~~~-~frt~~~~~-~e~piyNe~-~~E~~~ 340 (975)
T KOG2419|consen 284 LTLIGAEMKYDIVEDVAKLFKDKWLAITSFGEQ-TFRTEISDD-TEKPIYNED-EREDSD 340 (975)
T ss_pred HHHhhhhcccchhhhhhhccCCCchheeecchh-hhhhhhhcc-ccccccccc-cccccc
Confidence 34566666643211 1235789999998744 568887765 899999997 555543
No 167
>KOG0904 consensus Phosphatidylinositol 3-kinase catalytic subunit (p110) [Signal transduction mechanisms]
Probab=29.59 E-value=1.2e+02 Score=32.31 Aligned_cols=72 Identities=21% Similarity=0.331 Sum_probs=44.1
Q ss_pred cEEEEEEEeeeCCCCCCCCCCCCCeEEEEEEC---CcCe----EEeEeecCCCCCCeeceEEEEEecCCCccCCCcEEEE
Q 047341 4 QILEIILISAQGLKSPSSKMRRMQTYALVWID---SSTK----LCTRVDRAGAESPIWNEKFLFKVTPEFLSSETSAISV 76 (254)
Q Consensus 4 g~L~V~VisA~~L~~~~d~~G~~DPYV~V~l~---~~~k----~rTkv~k~gt~NP~WNE~f~F~v~~~~l~~~~~~L~v 76 (254)
+.++|+++++..+.-. .+.|-+|.|..+ |... ..|.- .++..+|.||+.+.|.+.-..+. ....|.|
T Consensus 343 ~~frI~l~~is~~n~~----~t~~~kV~V~~~lyhG~e~Lc~~~sTs~-v~~~~~~~Wn~~leFDI~i~DLP-r~ArLc~ 416 (1076)
T KOG0904|consen 343 RPFRIKLVGISKVNLP----ETVDLKVFVEAGLYHGTEVLCKTRSTSE-VPGCSFPLWNEWLEFDIYIKDLP-RMARLCL 416 (1076)
T ss_pred CceEEEEeeccccCCC----cccceEEEEEEEEEECCeehhcccccCC-CCCccchhccceeEeeeecCCCC-hhhhhee
Confidence 3578888888765443 245666666653 3211 12322 24578999999988886543221 3567888
Q ss_pred EEEec
Q 047341 77 EIYAS 81 (254)
Q Consensus 77 eV~D~ 81 (254)
.||..
T Consensus 417 ~i~~v 421 (1076)
T KOG0904|consen 417 AIYAV 421 (1076)
T ss_pred eeeEe
Confidence 88875
No 168
>cd05137 RasGAP_CLA2_BUD2 CLA2/BUD2 functions as a GTPase-activating protein (GAP) for BUD1/RSR1 and is necessary for proper bud-site selection in yeast. BUD2 has sequence similarity to the catalytic domain of RasGAPs, and stimulates the hydrolysis of BUD1-GTP to BUD1-GDP. Elimination of Bud2p activity by mutation causes a random budding pattern with no growth defect. Overproduction of Bud2p also alters the budding pattern.
Probab=27.80 E-value=83 Score=30.26 Aligned_cols=48 Identities=19% Similarity=0.108 Sum_probs=31.8
Q ss_pred eeEEEEEeCccccccCCCCCCeeEEEEeeCCCC--CcceEEEEEEEEEeCCCCC
Q 047341 88 LIGTVRFLVSNISLSVATKTPSFTAFQIRRPSG--RFQGVLSIGSMLIDGSDLP 139 (254)
Q Consensus 88 ~LG~~~IpL~~l~~~~~~~~~~~~~~~L~~~~g--~~~G~I~lsl~f~p~~~~p 139 (254)
++|.+.||+..+..... ....||++..... ...|.| +.++|....-.|
T Consensus 1 ~~G~v~i~~~~~~~~~~---~~e~w~~i~~~~~~~~~~~~l-lk~~~~~~~VLp 50 (395)
T cd05137 1 LVGRIDITLEMILDRGL---DKETWLPIFDVDNKSVGEGLI-IKVSSEENFVLP 50 (395)
T ss_pred CeeEEEeehhhhccCCC---CceeeeccccCCCCCcCcceE-EEEEeeeceecc
Confidence 48999999999655432 2458999986432 335666 688887653333
No 169
>PF12416 DUF3668: Cep120 protein; InterPro: IPR022136 This domain family is found in eukaryotes, and is typically between 75 and 114 amino acids in length.
Probab=23.08 E-value=4e+02 Score=25.11 Aligned_cols=92 Identities=8% Similarity=0.152 Sum_probs=56.2
Q ss_pred EEEEEEEeeeCCCCCC-----CCCCCCCeEEEEEECCcCeEEeEeecCCCCCCee--ceEEEEEecCC------CccCCC
Q 047341 5 ILEIILISAQGLKSPS-----SKMRRMQTYALVWIDSSTKLCTRVDRAGAESPIW--NEKFLFKVTPE------FLSSET 71 (254)
Q Consensus 5 ~L~V~VisA~~L~~~~-----d~~G~~DPYV~V~l~~~~k~rTkv~k~gt~NP~W--NE~f~F~v~~~------~l~~~~ 71 (254)
+|.|++..|++|...- +..+...-|....+.++. ..|..... ..+|.+ ++.-.|.+..+ ++ ...
T Consensus 193 vLsvti~~a~nL~~Lip~~l~~~~~~~~f~f~YsllGn~-Vt~~~F~~-l~~~~f~~er~s~vRirSS~~~L~~yf-~~~ 269 (340)
T PF12416_consen 193 VLSVTIKFAENLEQLIPSSLPEEQNHSGFFFYYSLLGND-VTTEPFKS-LSSPSFPPERASGVRIRSSLRVLRRYF-QQI 269 (340)
T ss_pred EEEEehhhhhhHHhhccccccccCCCccEEEEEEecCcE-eEeeeccc-cCCCCcCeeeeeEEeecccHHHHHHHH-hhC
Confidence 5778888999886541 111234556777777663 35544433 667765 34433666542 11 112
Q ss_pred cEEEEEEEecCCCCCceeEEEEEeCccccccC
Q 047341 72 SAISVEIYASGYLRDYLIGTVRFLVSNISLSV 103 (254)
Q Consensus 72 ~~L~veV~D~d~~~D~~LG~~~IpL~~l~~~~ 103 (254)
..|.|-++. ++..||.+.|++..+....
T Consensus 270 ~~L~I~Lc~----g~~~Lg~~~v~l~~Ll~~~ 297 (340)
T PF12416_consen 270 PKLQIHLCC----GNQSLGSTSVPLQPLLPKD 297 (340)
T ss_pred CCeEEEEee----CCcEEEEEEEEhhhccCCC
Confidence 456666654 6789999999999987654
No 170
>PF15084 DUF4550: Domain of unknown function (DUF4550)
Probab=21.68 E-value=1.1e+02 Score=23.75 Aligned_cols=53 Identities=21% Similarity=0.325 Sum_probs=32.0
Q ss_pred EEEEECCcCeEEeEeecCCCCCCeeceEEEEEecCCCc-cCCCcEEEEEEEecC
Q 047341 30 ALVWIDSSTKLCTRVDRAGAESPIWNEKFLFKVTPEFL-SSETSAISVEIYASG 82 (254)
Q Consensus 30 V~V~l~~~~k~rTkv~k~gt~NP~WNE~f~F~v~~~~l-~~~~~~L~veV~D~d 82 (254)
++|...+..|.-+....++..=..|.++|.+.|+.+.+ ..-...|.+.|||..
T Consensus 30 AKvF~e~~~K~~~~w~~gd~~Wv~W~~~~~i~vt~e~l~kl~~h~i~~kiwDtk 83 (99)
T PF15084_consen 30 AKVFLENESKTVKPWHEGDQVWVSWTHTFNINVTKELLKKLYFHKITLKIWDTK 83 (99)
T ss_pred eeEEEcCCceEeeeEecCCEEEEEEEEEEEeccCHHHHHHHHcCeEEEEEEcch
Confidence 45555444332222333333348899999999987543 123578999999853
Done!