BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 047344
(80 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3IZR|EE Chain e, Localization Of The Large Subunit Ribosomal Proteins Into
A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s
Ribosome
Length = 244
Score = 70.5 bits (171), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 35/59 (59%), Positives = 42/59 (71%), Gaps = 5/59 (8%)
Query: 15 FNPKIKKIL-----REIFNGIFLKANNTTIHMFHIFKHYITYGYPNLKNVRELIYMGGY 68
+PK KKIL R+IFNG+FLK N TI+M + Y+TYGYPNLK+VRELIY GY
Sbjct: 97 MHPKTKKILQLLRLRQIFNGVFLKVNKATINMLRRVEPYVTYGYPNLKSVRELIYKRGY 155
>pdb|2ZKR|WW Chain w, Structure Of A Mammalian Ribosomal 60s Subunit Within An
80s Complex Obtained By Docking Homology Models Of The
Rna And Proteins Into An 8.7 A Cryo-Em Map
Length = 270
Score = 64.3 bits (155), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 30/58 (51%), Positives = 41/58 (70%), Gaps = 5/58 (8%)
Query: 16 NPKIKKIL-----REIFNGIFLKANNTTIHMFHIFKHYITYGYPNLKNVRELIYMGGY 68
+PK++K+L R+IFNG F+K N +I+M I + YI +GYPNLK+V ELIY GY
Sbjct: 124 SPKVRKVLQLLRLRQIFNGTFVKLNKASINMLRIVEPYIAWGYPNLKSVNELIYKRGY 181
>pdb|3ZF7|WW Chain w, High-resolution Cryo-electron Microscopy Structure Of The
Trypanosoma Brucei Ribosome
Length = 257
Score = 48.1 bits (113), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 23/57 (40%), Positives = 34/57 (59%), Gaps = 5/57 (8%)
Query: 17 PKIKKIL-----REIFNGIFLKANNTTIHMFHIFKHYITYGYPNLKNVRELIYMGGY 68
PK +KIL R+IFN +F++ N +M + YI YGYP+L VR ++Y G+
Sbjct: 112 PKQRKILQLLRLRQIFNTVFVRLNKPMENMLRAVEPYIAYGYPSLSTVRAMVYKRGH 168
>pdb|3IZS|EE Chain e, Localization Of The Large Subunit Ribosomal Proteins Into
A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae
Translating 80s Ribosome
pdb|3O58|G Chain G, Yeast 80s Ribosome. This Entry Consists Of The 60s Subunit
Of The First 80s In The Asymmetric Unit.
pdb|3O5H|G Chain G, Yeast 80s Ribosome. This Entry Consists Of The 60s Subunit
Of The Second 80s In The Asymmetric Unit.
pdb|3U5E|F Chain F, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 60s
Subunit, Ribosome A
pdb|3U5I|F Chain F, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 60s
Subunit, Ribosome B
pdb|4B6A|F Chain F, Cryo-Em Structure Of The 60s Ribosomal Subunit In Complex
With Arx1 And Rei1
Length = 244
Score = 42.7 bits (99), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 33/57 (57%), Gaps = 5/57 (8%)
Query: 17 PKIKKILR-----EIFNGIFLKANNTTIHMFHIFKHYITYGYPNLKNVRELIYMGGY 68
PK +K+L+ I +G F+K T+ + + + Y+ YGYP+ +R+L+Y G+
Sbjct: 97 PKPRKVLQLLRLTRINSGTFVKVTKATLELLKLIEPYVAYGYPSYSTIRQLVYKRGF 153
>pdb|1S1I|F Chain F, Structure Of The Ribosomal 80s-Eef2-Sordarin Complex
From Yeast Obtained By Docking Atomic Models For Rna
And Protein Components Into A 11.7 A Cryo-Em Map. This
File, 1s1i, Contains 60s Subunit. The 40s Ribosomal
Subunit Is In File 1s1h
Length = 162
Score = 42.0 bits (97), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 33/57 (57%), Gaps = 5/57 (8%)
Query: 17 PKIKKILR-----EIFNGIFLKANNTTIHMFHIFKHYITYGYPNLKNVRELIYMGGY 68
PK +K+L+ I +G F+K T+ + + + Y+ YGYP+ +R+L+Y G+
Sbjct: 15 PKPRKVLQLLRLTRINSGTFVKVTKATLELLKLIEPYVAYGYPSYSTIRQLVYKRGF 71
>pdb|3JYW|F Chain F, Structure Of The 60s Proteins For Eukaryotic Ribosome
Based On Cryo-Em Map Of Thermomyces Lanuginosus Ribosome
At 8.9a Resolution
Length = 213
Score = 42.0 bits (97), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 33/57 (57%), Gaps = 5/57 (8%)
Query: 17 PKIKKILR-----EIFNGIFLKANNTTIHMFHIFKHYITYGYPNLKNVRELIYMGGY 68
PK +K+L+ I +G F+K T+ + + + Y+ YGYP+ +R+L+Y G+
Sbjct: 66 PKPRKVLQLLRLTRINSGTFVKVTKATLELLKLIEPYVAYGYPSYSTIRQLVYKRGF 122
>pdb|4A17|V Chain V, T.Thermophila 60s Ribosomal Subunit In Complex With
Initiation Factor 6. This File Contains 5s Rrna, 5.8s
Rrna And Proteins Of Molecule 2.
pdb|4A1A|V Chain V, T.Thermophila 60s Ribosomal Subunit In Complex With
Initiation Factor 6. This File Contains 5s Rrna, 5.8s
Rrna And Proteins Of Molecule 3.
pdb|4A1C|V Chain V, T.Thermophila 60s Ribosomal Subunit In Complex With
Initiation Factor 6. This File Contains 5s Rrna, 5.8s
Rrna And Proteins Of Molecule 4.
pdb|4A1E|V Chain V, T.Thermophila 60s Ribosomal Subunit In Complex With
Initiation Factor 6. This File Contains 5s Rrna, 5.8s
Rrna And Proteins Of Molecule 1
Length = 239
Score = 40.4 bits (93), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 33/60 (55%), Gaps = 5/60 (8%)
Query: 15 FNPKIKKILR-----EIFNGIFLKANNTTIHMFHIFKHYITYGYPNLKNVRELIYMGGYT 69
+P +K++LR ++ NG F + N +++M +IT+GYP + +LIY G+
Sbjct: 92 LHPDVKRVLRLFRLRQLHNGAFFRVNKASLNMIKRVLPFITFGYPTRNTISKLIYKRGFA 151
>pdb|1LRN|A Chain A, Aquifex Aeolicus Kdo8p Synthase H185g Mutant In Complex
With Cadmium
pdb|1LRN|B Chain B, Aquifex Aeolicus Kdo8p Synthase H185g Mutant In Complex
With Cadmium
pdb|1LRO|A Chain A, Aquifex Aeolicus Kdo8p Synthase H185g Mutant In Complex
With Pep And Cadmium
pdb|1LRO|B Chain B, Aquifex Aeolicus Kdo8p Synthase H185g Mutant In Complex
With Pep And Cadmium
pdb|1LRQ|A Chain A, Aquifex Aeolicus Kdo8p Synthase H185g Mutant In Complex
With Pep, A5p And Cadmium
pdb|1LRQ|B Chain B, Aquifex Aeolicus Kdo8p Synthase H185g Mutant In Complex
With Pep, A5p And Cadmium
Length = 267
Score = 30.8 bits (68), Expect = 0.21, Method: Composition-based stats.
Identities = 19/60 (31%), Positives = 30/60 (50%), Gaps = 11/60 (18%)
Query: 2 KEIGTITKSFKELFNPKIKKILREIFNGIFLKANNTTIHMFHIFKHYITYGYPNLKNVRE 61
+EI +++ FKE+ +F F KAN ++IH F H + YG L+ V+E
Sbjct: 24 EEIKRLSEKFKEV---------EFVFKSSFDKANRSSIHSFR--GHGLEYGVKALRKVKE 72
>pdb|1T8X|A Chain A, R106g Kdo8ps With Pep And A5p
pdb|1T8X|B Chain B, R106g Kdo8ps With Pep And A5p
pdb|1T96|A Chain A, R106g Kdo8ps With Pep
pdb|1T96|B Chain B, R106g Kdo8ps With Pep
pdb|1T99|A Chain A, R106g Kdo8ps Without Substrates
pdb|1T99|B Chain B, R106g Kdo8ps Without Substrates
pdb|1ZHA|A Chain A, A. Aeolicus Kdo8ps R106g Mutant In Complex With Pep And
R5p
pdb|1ZHA|B Chain B, A. Aeolicus Kdo8ps R106g Mutant In Complex With Pep And
R5p
pdb|1ZJI|A Chain A, Aquifex Aeolicus Kdo8ps R106g Mutant In Complex With
2pga And R5p
pdb|1ZJI|B Chain B, Aquifex Aeolicus Kdo8ps R106g Mutant In Complex With
2pga And R5p
Length = 267
Score = 30.8 bits (68), Expect = 0.21, Method: Composition-based stats.
Identities = 19/60 (31%), Positives = 30/60 (50%), Gaps = 11/60 (18%)
Query: 2 KEIGTITKSFKELFNPKIKKILREIFNGIFLKANNTTIHMFHIFKHYITYGYPNLKNVRE 61
+EI +++ FKE+ +F F KAN ++IH F H + YG L+ V+E
Sbjct: 24 EEIKRLSEKFKEV---------EFVFKSSFDKANRSSIHSFR--GHGLEYGVKALRKVKE 72
>pdb|1FWN|A Chain A, Aquifex Aeolicus Kdo8p Synthase In Complex With Pep
pdb|1FWN|B Chain B, Aquifex Aeolicus Kdo8p Synthase In Complex With Pep
pdb|1FWS|A Chain A, Aquifex Aeolicus Kdo8p Synthase In Complex With Pep And
Cadmium
pdb|1FWS|B Chain B, Aquifex Aeolicus Kdo8p Synthase In Complex With Pep And
Cadmium
pdb|1FWT|A Chain A, Aquifex Aeolicus Kdo8p Synthase In Complex With Pep, E4p
And Cadmium
pdb|1FWT|B Chain B, Aquifex Aeolicus Kdo8p Synthase In Complex With Pep, E4p
And Cadmium
pdb|1FWW|A Chain A, Aquifex Aeolicus Kdo8p Synthase In Complex With Pep, A5p
And Cadmium
pdb|1FWW|B Chain B, Aquifex Aeolicus Kdo8p Synthase In Complex With Pep, A5p
And Cadmium
pdb|1FX6|A Chain A, Aquifex Aeolicus Kdo8p Synthase
pdb|1FX6|B Chain B, Aquifex Aeolicus Kdo8p Synthase
pdb|1FXP|A Chain A, Aquifex Aeolicus Kdo8p Synthase In Complex With Cadmium
pdb|1FXP|B Chain B, Aquifex Aeolicus Kdo8p Synthase In Complex With Cadmium
pdb|1FXQ|A Chain A, Aquifex Aeolicus Kdo8p Synthase In Complex With Pep And
A5p
pdb|1FXQ|B Chain B, Aquifex Aeolicus Kdo8p Synthase In Complex With Pep And
A5p
pdb|1FY6|A Chain A, Aquifex Aeolicus Kdo8p Synthase In Complex With Cadmium
And A5p
pdb|1FY6|B Chain B, Aquifex Aeolicus Kdo8p Synthase In Complex With Cadmium
And A5p
pdb|1JCX|A Chain A, Aquifex Aeolicus Kdo8p Synthase In Complex With Api And
Cadmium
pdb|1JCX|B Chain B, Aquifex Aeolicus Kdo8p Synthase In Complex With Api And
Cadmium
pdb|1JCY|A Chain A, Aquifex Aeolicus Kdo8p Synthase In Complex With R5p, Pep
And Cadmium
pdb|1JCY|B Chain B, Aquifex Aeolicus Kdo8p Synthase In Complex With R5p, Pep
And Cadmium
pdb|1PE1|A Chain A, Aquifex Aeolicus Kdo8ps In Complex With Cadmium And
2-Pga
pdb|1PE1|B Chain B, Aquifex Aeolicus Kdo8ps In Complex With Cadmium And
2-Pga
pdb|1PCK|A Chain A, Aquifex Aeolicus Kdo8ps In Complex With Z-Methyl-Pep
pdb|1PCK|B Chain B, Aquifex Aeolicus Kdo8ps In Complex With Z-Methyl-Pep
pdb|1PCW|A Chain A, Aquifex Aeolicus Kdo8ps In Complex With Cadmium And App,
A Bisubstrate Inhibitor
pdb|1PCW|B Chain B, Aquifex Aeolicus Kdo8ps In Complex With Cadmium And App,
A Bisubstrate Inhibitor
pdb|2A21|A Chain A, Aquifex Aeolicus Kdo8ps In Complex With Pep, Po4, And
Zn2+
pdb|2A21|B Chain B, Aquifex Aeolicus Kdo8ps In Complex With Pep, Po4, And
Zn2+
pdb|2A2I|A Chain A, Aquifex Aeolicus Kdo8ps In Complex With Pep, A5p, Zn2+
pdb|2A2I|B Chain B, Aquifex Aeolicus Kdo8ps In Complex With Pep, A5p, Zn2+
pdb|3E0I|A Chain A, Cu2+ Substituted Aquifex Aeolicus Kdo8ps In Complex With
Pep
pdb|3E0I|B Chain B, Cu2+ Substituted Aquifex Aeolicus Kdo8ps In Complex With
Pep
pdb|3E12|A Chain A, Cu2+ Substituted Aquifex Aeolicus Kdo8ps In Complex With
Kdo8p
pdb|3E12|B Chain B, Cu2+ Substituted Aquifex Aeolicus Kdo8ps In Complex With
Kdo8p
Length = 267
Score = 30.8 bits (68), Expect = 0.22, Method: Composition-based stats.
Identities = 19/60 (31%), Positives = 30/60 (50%), Gaps = 11/60 (18%)
Query: 2 KEIGTITKSFKELFNPKIKKILREIFNGIFLKANNTTIHMFHIFKHYITYGYPNLKNVRE 61
+EI +++ FKE+ +F F KAN ++IH F H + YG L+ V+E
Sbjct: 24 EEIKRLSEKFKEV---------EFVFKSSFDKANRSSIHSFR--GHGLEYGVKALRKVKE 72
>pdb|2NXG|A Chain A, Structural And Mechanistic Changes Along An Engineered
Path From Metallo To Non-Metallo Kdo8p Synthase.
pdb|2NXG|B Chain B, Structural And Mechanistic Changes Along An Engineered
Path From Metallo To Non-Metallo Kdo8p Synthase.
pdb|2NXH|A Chain A, Structural And Mechanistic Changes Along An Engineered
Path From Metallo To Non-Metallo Kdo8p Synthase.
pdb|2NXH|B Chain B, Structural And Mechanistic Changes Along An Engineered
Path From Metallo To Non-Metallo Kdo8p Synthase.
pdb|2NXH|C Chain C, Structural And Mechanistic Changes Along An Engineered
Path From Metallo To Non-Metallo Kdo8p Synthase.
pdb|2NXH|D Chain D, Structural And Mechanistic Changes Along An Engineered
Path From Metallo To Non-Metallo Kdo8p Synthase.
pdb|2NXH|E Chain E, Structural And Mechanistic Changes Along An Engineered
Path From Metallo To Non-Metallo Kdo8p Synthase.
pdb|2NXH|F Chain F, Structural And Mechanistic Changes Along An Engineered
Path From Metallo To Non-Metallo Kdo8p Synthase.
pdb|2NXH|G Chain G, Structural And Mechanistic Changes Along An Engineered
Path From Metallo To Non-Metallo Kdo8p Synthase.
pdb|2NXH|H Chain H, Structural And Mechanistic Changes Along An Engineered
Path From Metallo To Non-Metallo Kdo8p Synthase.
pdb|2NXH|I Chain I, Structural And Mechanistic Changes Along An Engineered
Path From Metallo To Non-Metallo Kdo8p Synthase.
pdb|2NXH|J Chain J, Structural And Mechanistic Changes Along An Engineered
Path From Metallo To Non-Metallo Kdo8p Synthase.
pdb|2NXH|K Chain K, Structural And Mechanistic Changes Along An Engineered
Path From Metallo To Non-Metallo Kdo8p Synthase.
pdb|2NXH|L Chain L, Structural And Mechanistic Changes Along An Engineered
Path From Metallo To Non-Metallo Kdo8p Synthase
Length = 263
Score = 30.4 bits (67), Expect = 0.26, Method: Composition-based stats.
Identities = 19/60 (31%), Positives = 30/60 (50%), Gaps = 11/60 (18%)
Query: 2 KEIGTITKSFKELFNPKIKKILREIFNGIFLKANNTTIHMFHIFKHYITYGYPNLKNVRE 61
+EI +++ FKE+ +F F KAN ++IH F H + YG L+ V+E
Sbjct: 23 EEIKRLSEKFKEV---------EFVFKSSFDKANRSSIHSFR--GHGLEYGVKALRKVKE 71
>pdb|2NX3|A Chain A, Structural And Mechanistic Changes Along An Engineered
Path From Metallo To Non-Metallo Kdo8p Synthase
pdb|2NX3|B Chain B, Structural And Mechanistic Changes Along An Engineered
Path From Metallo To Non-Metallo Kdo8p Synthase
pdb|2NX3|C Chain C, Structural And Mechanistic Changes Along An Engineered
Path From Metallo To Non-Metallo Kdo8p Synthase
pdb|2NX3|D Chain D, Structural And Mechanistic Changes Along An Engineered
Path From Metallo To Non-Metallo Kdo8p Synthase
pdb|2NX3|E Chain E, Structural And Mechanistic Changes Along An Engineered
Path From Metallo To Non-Metallo Kdo8p Synthase
pdb|2NX3|F Chain F, Structural And Mechanistic Changes Along An Engineered
Path From Metallo To Non-Metallo Kdo8p Synthase
pdb|2NX3|G Chain G, Structural And Mechanistic Changes Along An Engineered
Path From Metallo To Non-Metallo Kdo8p Synthase
pdb|2NX3|H Chain H, Structural And Mechanistic Changes Along An Engineered
Path From Metallo To Non-Metallo Kdo8p Synthase
pdb|2NX3|I Chain I, Structural And Mechanistic Changes Along An Engineered
Path From Metallo To Non-Metallo Kdo8p Synthase
pdb|2NX3|J Chain J, Structural And Mechanistic Changes Along An Engineered
Path From Metallo To Non-Metallo Kdo8p Synthase
pdb|2NX3|K Chain K, Structural And Mechanistic Changes Along An Engineered
Path From Metallo To Non-Metallo Kdo8p Synthase
pdb|2NX3|L Chain L, Structural And Mechanistic Changes Along An Engineered
Path From Metallo To Non-Metallo Kdo8p Synthase
Length = 267
Score = 30.4 bits (67), Expect = 0.26, Method: Composition-based stats.
Identities = 19/60 (31%), Positives = 30/60 (50%), Gaps = 11/60 (18%)
Query: 2 KEIGTITKSFKELFNPKIKKILREIFNGIFLKANNTTIHMFHIFKHYITYGYPNLKNVRE 61
+EI +++ FKE+ +F F KAN ++IH F H + YG L+ V+E
Sbjct: 24 EEIKRLSEKFKEV---------EFVFKSSFDKANRSSIHSFR--GHGLEYGVKALRKVKE 72
>pdb|2NWR|A Chain A, Crystal Structure Of C11n Mutant Of Kdo8p Synthase In
Complex With Pep
pdb|2NWR|B Chain B, Crystal Structure Of C11n Mutant Of Kdo8p Synthase In
Complex With Pep
pdb|2NWS|A Chain A, Structural And Mechanistic Changes Along An Engineered
Path From Metallo To Non-Metallo Kdo8p Synthase
pdb|2NWS|B Chain B, Structural And Mechanistic Changes Along An Engineered
Path From Metallo To Non-Metallo Kdo8p Synthase
pdb|2NX1|A Chain A, Structural And Mechanistic Changes Along An Engineered
Path From Metallo To Non-Metallo Kdo8p Synthase
pdb|2NX1|B Chain B, Structural And Mechanistic Changes Along An Engineered
Path From Metallo To Non-Metallo Kdo8p Synthase
Length = 267
Score = 30.4 bits (67), Expect = 0.26, Method: Composition-based stats.
Identities = 19/60 (31%), Positives = 30/60 (50%), Gaps = 11/60 (18%)
Query: 2 KEIGTITKSFKELFNPKIKKILREIFNGIFLKANNTTIHMFHIFKHYITYGYPNLKNVRE 61
+EI +++ FKE+ +F F KAN ++IH F H + YG L+ V+E
Sbjct: 24 EEIKRLSEKFKEV---------EFVFKSSFDKANRSSIHSFR--GHGLEYGVKALRKVKE 72
>pdb|2EF9|A Chain A, Structural And Mechanistic Changes Along An Engineered
Path From Metallo To Non-Metallo Kdo8p Synthase
pdb|2EF9|B Chain B, Structural And Mechanistic Changes Along An Engineered
Path From Metallo To Non-Metallo Kdo8p Synthase
Length = 267
Score = 30.4 bits (67), Expect = 0.27, Method: Composition-based stats.
Identities = 19/60 (31%), Positives = 30/60 (50%), Gaps = 11/60 (18%)
Query: 2 KEIGTITKSFKELFNPKIKKILREIFNGIFLKANNTTIHMFHIFKHYITYGYPNLKNVRE 61
+EI +++ FKE+ +F F KAN ++IH F H + YG L+ V+E
Sbjct: 24 EEIKRLSEKFKEV---------EFVFKSSFDKANRSSIHSFR--GHGLEYGVKALRKVKE 72
>pdb|2NXI|A Chain A, Structural And Mechanistic Changes Along An Engineered
Path From Metallo To Non-Metallo Kdo8p Synthase.
pdb|2NXI|B Chain B, Structural And Mechanistic Changes Along An Engineered
Path From Metallo To Non-Metallo Kdo8p Synthase.
pdb|2NXI|C Chain C, Structural And Mechanistic Changes Along An Engineered
Path From Metallo To Non-Metallo Kdo8p Synthase.
pdb|2NXI|D Chain D, Structural And Mechanistic Changes Along An Engineered
Path From Metallo To Non-Metallo Kdo8p Synthase.
pdb|2NXI|E Chain E, Structural And Mechanistic Changes Along An Engineered
Path From Metallo To Non-Metallo Kdo8p Synthase.
pdb|2NXI|F Chain F, Structural And Mechanistic Changes Along An Engineered
Path From Metallo To Non-Metallo Kdo8p Synthase.
pdb|2NXI|G Chain G, Structural And Mechanistic Changes Along An Engineered
Path From Metallo To Non-Metallo Kdo8p Synthase.
pdb|2NXI|H Chain H, Structural And Mechanistic Changes Along An Engineered
Path From Metallo To Non-Metallo Kdo8p Synthase.
pdb|2NXI|I Chain I, Structural And Mechanistic Changes Along An Engineered
Path From Metallo To Non-Metallo Kdo8p Synthase.
pdb|2NXI|J Chain J, Structural And Mechanistic Changes Along An Engineered
Path From Metallo To Non-Metallo Kdo8p Synthase.
pdb|2NXI|K Chain K, Structural And Mechanistic Changes Along An Engineered
Path From Metallo To Non-Metallo Kdo8p Synthase.
pdb|2NXI|L Chain L, Structural And Mechanistic Changes Along An Engineered
Path From Metallo To Non-Metallo Kdo8p Synthase
Length = 263
Score = 30.4 bits (67), Expect = 0.28, Method: Composition-based stats.
Identities = 19/60 (31%), Positives = 30/60 (50%), Gaps = 11/60 (18%)
Query: 2 KEIGTITKSFKELFNPKIKKILREIFNGIFLKANNTTIHMFHIFKHYITYGYPNLKNVRE 61
+EI +++ FKE+ +F F KAN ++IH F H + YG L+ V+E
Sbjct: 23 EEIKRLSEKFKEV---------EFVFKSSFDKANRSSIHSFR--GHGLEYGVKALRKVKE 71
>pdb|1URJ|A Chain A, Single Stranded Dna-Binding Protein(Icp8) From Herpes
Simplex Virus-1
pdb|1URJ|B Chain B, Single Stranded Dna-Binding Protein(Icp8) From Herpes
Simplex Virus-1
Length = 1136
Score = 26.2 bits (56), Expect = 4.4, Method: Composition-based stats.
Identities = 9/33 (27%), Positives = 20/33 (60%)
Query: 9 KSFKELFNPKIKKILREIFNGIFLKANNTTIHM 41
++F+ F P +++ + ++FN FL A T+ +
Sbjct: 701 RNFRNQFQPVLRRRVMDMFNNGFLSAKTLTVAL 733
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.330 0.147 0.444
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,495,166
Number of Sequences: 62578
Number of extensions: 90044
Number of successful extensions: 283
Number of sequences better than 100.0: 20
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 274
Number of HSP's gapped (non-prelim): 20
length of query: 80
length of database: 14,973,337
effective HSP length: 49
effective length of query: 31
effective length of database: 11,907,015
effective search space: 369117465
effective search space used: 369117465
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 45 (21.9 bits)