Query 047344
Match_columns 80
No_of_seqs 123 out of 438
Neff 5.0
Searched_HMMs 29240
Date Mon Mar 25 17:55:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047344.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/047344hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4a17_V RPL7, 60S ribosomal pro 99.9 1.7E-27 5.8E-32 174.7 8.4 71 4-74 81-156 (239)
2 3izc_e 60S ribosomal protein R 99.9 1.6E-27 5.4E-32 175.3 6.7 71 4-74 84-159 (244)
3 3iz5_e 60S ribosomal protein L 99.9 1.9E-27 6.4E-32 174.9 6.5 71 4-74 86-161 (244)
4 3j21_Y 50S ribosomal protein L 99.9 6.6E-27 2.3E-31 162.2 8.1 68 1-68 1-73 (155)
5 1vq8_W 50S ribosomal protein L 99.9 2E-26 6.7E-31 159.7 7.8 70 4-73 2-76 (154)
6 2zkr_w 60S ribosomal protein L 99.9 7.2E-25 2.5E-29 163.2 1.5 70 4-73 112-186 (270)
7 3jyw_F 60S ribosomal protein L 99.9 5.9E-25 2E-29 158.0 -1.7 71 4-74 53-128 (213)
8 1bxy_A Protein (ribosomal prot 99.6 5.1E-15 1.8E-19 88.9 6.3 55 1-55 1-60 (60)
9 3r8s_Z 50S ribosomal protein L 99.3 4.2E-12 1.4E-16 75.7 5.6 53 1-53 1-58 (58)
10 2zjr_W 50S ribosomal protein L 99.2 3E-12 1E-16 75.6 2.9 49 5-53 2-55 (55)
11 2qh9_A UPF0215 protein AF_1433 45.3 12 0.00042 25.5 2.3 30 36-66 118-155 (184)
12 3tha_A Tryptophan synthase alp 45.3 7.1 0.00024 28.1 1.1 20 45-64 16-35 (252)
13 3nav_A Tryptophan synthase alp 40.5 9.3 0.00032 27.5 1.1 19 46-64 23-41 (271)
14 3fpn_B Geobacillus stearotherm 36.4 33 0.0011 21.2 3.0 28 53-80 22-54 (106)
15 3vnd_A TSA, tryptophan synthas 32.4 15 0.00051 26.3 1.1 20 45-64 20-39 (267)
16 3pg6_A E3 ubiquitin-protein li 31.0 58 0.002 22.3 3.8 15 29-43 80-94 (159)
17 2jni_A Arenicin-2; peptide, an 29.8 22 0.00074 17.3 1.1 9 4-12 5-13 (26)
18 4evu_A Putative periplasmic pr 26.3 41 0.0014 20.0 2.1 23 1-23 17-39 (72)
19 2lfp_A Bacteriophage SPP1 comp 22.2 34 0.0012 21.4 1.3 12 44-55 42-53 (139)
20 4adn_A FAR1; antibiotic resist 21.6 35 0.0012 24.4 1.3 55 14-71 59-115 (222)
21 1ex7_A Guanylate kinase; subst 21.1 1.9E+02 0.0063 19.1 4.9 49 19-68 85-137 (186)
No 1
>4a17_V RPL7, 60S ribosomal protein L7; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_V 4a1c_V 4a1e_V
Probab=99.94 E-value=1.7e-27 Score=174.73 Aligned_cols=71 Identities=27% Similarity=0.546 Sum_probs=68.9
Q ss_pred EEEEEeeeccCCCHHHHHHh-----hcceeEEEEecChhhHHHhhhccccEEEecCCHHHHHHHHHhcceeeeece
Q 047344 4 IGTITKSFKELFNPKIKKIL-----REIFNGIFLKANNTTIHMFHIFKHYITYGYPNLKNVRELIYMGGYTYFFLT 74 (80)
Q Consensus 4 ~~vIRiRG~~~v~p~v~ktL-----~ki~~~vfvk~~~~~~~ML~~VepYVt~G~p~l~tvreLi~KRG~~ki~~~ 74 (80)
++||||||++|+||++++|| +++|+|||+++||++.+||++|+|||+|||||++||++||+|||++++|..
T Consensus 81 ~fVirIRg~ig~~~~~rktL~~LgL~ki~~~Vfvk~npa~~gMLr~V~pyV~~G~pnlksv~eLi~KRG~~k~~~~ 156 (239)
T 4a17_V 81 AFAIRIRGVNQLHPDVKRVLRLFRLRQLHNGAFFRVNKASLNMIKRVLPFITFGYPTRNTISKLIYKRGFAKVNGQ 156 (239)
T ss_dssp EEEEECSCSSSCCHHHHHHHHHTTCCBTTEEEEEECCHHHHHTTGGGGGGEEEECCCHHHHHHHHHHSCEEEETTE
T ss_pred EEEEEecccCCCCHHHHHHHHHcCCCccCCeEEEeCCHHHHHHHHHhhhceeeecCCHHHHHHHHHhhCccccCCc
Confidence 67999999999999999999 999999999999999999999999999999999999999999999999873
No 2
>3izc_e 60S ribosomal protein RPL7 (L30P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins; NMR {Saccharomyces cerevisiae} PDB: 3izs_e 3o58_G 3o5h_G 3u5e_F 3u5i_F 4b6a_F
Probab=99.94 E-value=1.6e-27 Score=175.26 Aligned_cols=71 Identities=25% Similarity=0.553 Sum_probs=68.9
Q ss_pred EEEEEeeeccCCCHHHHHHh-----hcceeEEEEecChhhHHHhhhccccEEEecCCHHHHHHHHHhcceeeeece
Q 047344 4 IGTITKSFKELFNPKIKKIL-----REIFNGIFLKANNTTIHMFHIFKHYITYGYPNLKNVRELIYMGGYTYFFLT 74 (80)
Q Consensus 4 ~~vIRiRG~~~v~p~v~ktL-----~ki~~~vfvk~~~~~~~ML~~VepYVt~G~p~l~tvreLi~KRG~~ki~~~ 74 (80)
++||||||++++||++++|| +++|+|||+++||++.+||++|+|||+|||||++||++||+|||+++++..
T Consensus 84 ~fVirIRs~ig~~~~~rktL~~LgL~ki~~~Vfv~~npa~~gMLr~V~pyVt~G~pnlksv~eLi~KRG~~k~~~~ 159 (244)
T 3izc_e 84 VFVVRIKGINKIPPKPRKVLQLLRLTRINSGTFVKVTKATLELLKLIEPYVAYGYPSYSTIRQLVYKRGFGKINKQ 159 (244)
T ss_dssp EEEECCSCSSSCCHHHHHHHHHHTCCSTTEEEEECSCHHHHHHHHHHTTSCEEECCCHHHHHHHHHHHCCCCSSSC
T ss_pred EEEEEecCcCCCCHHHHHHHHHcCCCccCCeEEEeCCHHHHHHHHHHhhHhhcccCCHHHHHHHHHhhCccccCCc
Confidence 57999999999999999999 999999999999999999999999999999999999999999999999874
No 3
>3iz5_e 60S ribosomal protein L7 (L30P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_e
Probab=99.94 E-value=1.9e-27 Score=174.90 Aligned_cols=71 Identities=49% Similarity=0.793 Sum_probs=68.9
Q ss_pred EEEEEeeeccCCCHHHHHHh-----hcceeEEEEecChhhHHHhhhccccEEEecCCHHHHHHHHHhcceeeeece
Q 047344 4 IGTITKSFKELFNPKIKKIL-----REIFNGIFLKANNTTIHMFHIFKHYITYGYPNLKNVRELIYMGGYTYFFLT 74 (80)
Q Consensus 4 ~~vIRiRG~~~v~p~v~ktL-----~ki~~~vfvk~~~~~~~ML~~VepYVt~G~p~l~tvreLi~KRG~~ki~~~ 74 (80)
+.||||||++|+||++++|| +++|+|||+++||++.+||++|+|||+|||||++||++||+|||++++++.
T Consensus 86 ~fVirIRg~ig~~~~~rktL~~LgL~ki~~~Vfv~~npa~~gML~~V~pyV~~G~pnlksv~eLi~KRG~~k~~~~ 161 (244)
T 3iz5_e 86 LFVVRIRGINAMHPKTKKILQLLRLRQIFNGVFLKVNKATINMLRRVEPYVTYGYPNLKSVRELIYKRGYGKLNKQ 161 (244)
T ss_dssp EEEECCSCSTTSCHHHHHHHHHTCCCSTTEEEEECSCHHHHHHHTTTGGGCEEECCCHHHHHHHHHHHCCCCTTSC
T ss_pred EEEEEecCcCCCCHHHHHHHHHcCCCccCCEEEEeCCHHHHHHHHHhhcceeeecCCHHHHHHHHHhhCeeccCCc
Confidence 67999999999999999999 999999999999999999999999999999999999999999999998874
No 4
>3j21_Y 50S ribosomal protein L30P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=99.94 E-value=6.6e-27 Score=162.15 Aligned_cols=68 Identities=19% Similarity=0.297 Sum_probs=67.2
Q ss_pred CceEEEEEeeeccCCCHHHHHHh-----hcceeEEEEecChhhHHHhhhccccEEEecCCHHHHHHHHHhcce
Q 047344 1 MKEIGTITKSFKELFNPKIKKIL-----REIFNGIFLKANNTTIHMFHIFKHYITYGYPNLKNVRELIYMGGY 68 (80)
Q Consensus 1 ~~~~~vIRiRG~~~v~p~v~ktL-----~ki~~~vfvk~~~~~~~ML~~VepYVt~G~p~l~tvreLi~KRG~ 68 (80)
|.++.|+||||..++||++++|| +++|++||+++||++.+||++|+|||+|||||++||+|||+|||+
T Consensus 1 m~~~~V~~irs~ig~~~~~r~tL~~LgL~ki~~~v~~~~tp~~~gMl~kV~~lV~vgep~~ksv~eLi~KRG~ 73 (155)
T 3j21_Y 1 MAKLAVIRIRGRVNVKRPVRDTLAMLRLHRVNHCVIVDDTPSYLGMLQKAKDYITWGEINAETLAKLIRKRGR 73 (155)
T ss_dssp CCEEEEEECSCSTTCCHHHHHHHHHTTCCSTTEEEEEECCHHHHHHHHHHTTTEEEEECCHHHHHHHHHHHCC
T ss_pred CCcEEEEEeCCCCCCCHHHHHHHHHcCCCcCCCEEEEcCCHHHHHHHHhhhcceEEEcCCHHHHHHHHHHhcc
Confidence 88999999999999999999999 999999999999999999999999999999999999999999999
No 5
>1vq8_W 50S ribosomal protein L30P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: d.59.1.1 PDB: 1jj2_V 1k73_X* 1k8a_X* 1k9m_X* 1kc8_X* 1kd1_X* 1kqs_V* 1m1k_X* 1m90_X* 1n8r_X* 1nji_X* 1q7y_X* 1q81_X* 1q82_X* 1q86_X* 1qvf_V 1qvg_V 1s72_W* 1vq4_W* 1vq5_W* ...
Probab=99.93 E-value=2e-26 Score=159.73 Aligned_cols=70 Identities=7% Similarity=0.093 Sum_probs=67.9
Q ss_pred EEEEEeeeccCCCHHHHHHh-----hcceeEEEEecChhhHHHhhhccccEEEecCCHHHHHHHHHhcceeeeec
Q 047344 4 IGTITKSFKELFNPKIKKIL-----REIFNGIFLKANNTTIHMFHIFKHYITYGYPNLKNVRELIYMGGYTYFFL 73 (80)
Q Consensus 4 ~~vIRiRG~~~v~p~v~ktL-----~ki~~~vfvk~~~~~~~ML~~VepYVt~G~p~l~tvreLi~KRG~~ki~~ 73 (80)
++|+||||..|+||++++|| +|+|++||+++||++.+||++|+|||+|||||++||++||+|||++++|.
T Consensus 2 ~fV~rirs~ig~~~~~r~tL~~LgL~ki~~~v~~~~tp~~~gMl~kV~~~V~vge~~l~sv~~Li~KRG~~~~~~ 76 (154)
T 1vq8_W 2 HALVQLRGEVNMHTDIQDTLEMLNIHHVNHCTLVPETDAYRGMVAKVNDFVAFGEPSQETLETVLATRAEPLEGD 76 (154)
T ss_dssp EEEEECSCSTTSCHHHHHHHHHTTCCSTTEEEEECCCHHHHHHHHHSGGGEEEECCCHHHHHHHHHHHCCBSSSC
T ss_pred EEEEEeCCcCCCCHHHHHHHHHcCCCcCCCEEEEeCCHHHHHHHHhhCceEEEecCchhhHHHHHHhhCccccCC
Confidence 57999999999999999999 99999999999999999999999999999999999999999999998875
No 6
>2zkr_w 60S ribosomal protein L7; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=99.89 E-value=7.2e-25 Score=163.16 Aligned_cols=70 Identities=44% Similarity=0.722 Sum_probs=67.9
Q ss_pred EEEEEeeeccCCCHHHHHHh-----hcceeEEEEecChhhHHHhhhccccEEEecCCHHHHHHHHHhcceeeeec
Q 047344 4 IGTITKSFKELFNPKIKKIL-----REIFNGIFLKANNTTIHMFHIFKHYITYGYPNLKNVRELIYMGGYTYFFL 73 (80)
Q Consensus 4 ~~vIRiRG~~~v~p~v~ktL-----~ki~~~vfvk~~~~~~~ML~~VepYVt~G~p~l~tvreLi~KRG~~ki~~ 73 (80)
+.|+||||.+|++|++++|| +++|++||+++||++.|||++|+|||+|||||++||++||+|||++++|.
T Consensus 112 ~~V~rirs~ig~~~~~rktL~~LgLrki~~~V~v~dtpa~rgML~kV~~~V~vgepnlksv~eLi~KRG~~ki~~ 186 (270)
T 2zkr_w 112 AFVIRIRGINGVSPKVRKVLQLLRLRQIFNGTFVKLNKASINMLRIVEPYIAWGYPNLKSVNELIYKRGYGKINK 186 (270)
T ss_dssp EEEECCSCSSSSCTTSSSHHHHTCCCSSSEEEEECCCHHHHHTTTSSTTSCBCCCCCTTTHHHHHHHCCCCSSSS
T ss_pred eEEEEeCCcCCCCHHHHHHHHHcCCCcCCCeEEEeCCHHHHHHHHhcccceeEecCCHHHHHHHHHhhcccccCC
Confidence 56899999999999999999 99999999999999999999999999999999999999999999999886
No 7
>3jyw_F 60S ribosomal protein L7(A); eukaryotic ribosome, RACK1 protein, flexible fitting; 8.90A {Thermomyces lanuginosus} PDB: 1s1i_F
Probab=99.88 E-value=5.9e-25 Score=157.97 Aligned_cols=71 Identities=25% Similarity=0.553 Sum_probs=68.3
Q ss_pred EEEEEeeeccCCCHHHHHHh-----hcceeEEEEecChhhHHHhhhccccEEEecCCHHHHHHHHHhcceeeeece
Q 047344 4 IGTITKSFKELFNPKIKKIL-----REIFNGIFLKANNTTIHMFHIFKHYITYGYPNLKNVRELIYMGGYTYFFLT 74 (80)
Q Consensus 4 ~~vIRiRG~~~v~p~v~ktL-----~ki~~~vfvk~~~~~~~ML~~VepYVt~G~p~l~tvreLi~KRG~~ki~~~ 74 (80)
+.++|+||+++++|+++++| +++|+|+|++.|+++.+||++|+|||+|||||++||++||+|||++|++..
T Consensus 53 ~fVIRIrGin~ispk~rkvLqLLRL~rInsgvfvk~~k~t~~mL~~VepyV~~G~p~l~tv~eLi~KRg~~k~~~~ 128 (213)
T 3jyw_F 53 VFVVRIKGINKIPPKPRKVLQLLRLTRINSGTFVKVTKATLELLKLIEPYVAYGYPSYSTIRQLVYKRGFGKINKQ 128 (213)
T ss_dssp CCCCCCSCSSCCCHHHHHHHGGGCCCSSSCBCCCCCSSTTTTHHHHTTTTSCEECCCSSTTTSHHHHSCCCSSSCC
T ss_pred ceeeeecCccCCCCchHHHHHHcccceecceEEecCCHHHHHHHhhccchheeecCCHHHHHHHHHhcCcccCCCC
Confidence 46799999999999999999 999999999999999999999999999999999999999999999998874
No 8
>1bxy_A Protein (ribosomal protein L30); X-RAY crystallography, conformational changes, ribosome; 1.90A {Thermus thermophilus} SCOP: d.59.1.1 PDB: 1giy_X 1ml5_x* 1vsa_X 1vsp_X 1yl3_X 2b66_3 2b9n_3 2b9p_3 2hgj_2 2hgq_2 2hgu_2 2j01_3 2j03_3 2jl6_3 2jl8_3 2v47_3 2v49_3 2wdi_3 2wdj_3 2wdl_3 ...
Probab=99.57 E-value=5.1e-15 Score=88.85 Aligned_cols=55 Identities=11% Similarity=0.021 Sum_probs=53.3
Q ss_pred CceEEEEEeeeccCCCHHHHHHh-----hcceeEEEEecChhhHHHhhhccccEEEecCC
Q 047344 1 MKEIGTITKSFKELFNPKIKKIL-----REIFNGIFLKANNTTIHMFHIFKHYITYGYPN 55 (80)
Q Consensus 1 ~~~~~vIRiRG~~~v~p~v~ktL-----~ki~~~vfvk~~~~~~~ML~~VepYVt~G~p~ 55 (80)
|.++.|.++||..|.+|+.++|| +++|++|++++||++.||+++|++||+|+++|
T Consensus 1 m~~~kItlvrS~ig~~~~~r~tl~~LGL~k~~~~v~~~dtp~irGMI~kV~hlV~veev~ 60 (60)
T 1bxy_A 1 MPRLKVKLVKSPIGYPKDQKAALKALGLRRLQQERVLEDTPAIRGNVEKVAHLVRVEVVE 60 (60)
T ss_dssp CCEEEEEECSCCTTCCHHHHHHHHHHTCCSTTCEEEEECCHHHHHHHHHTTTTEEEEEEC
T ss_pred CCcEEEEEeecCCCCCHHHHHHHHHhCCCCCCCEEEecCCHHHHhHHHHhHheEEEEecC
Confidence 78899999999999999999999 99999999999999999999999999999875
No 9
>3r8s_Z 50S ribosomal protein L30; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 1p85_X 1p86_X 2awb_Y 2aw4_Y 2i2v_Z 2j28_Y 2i2t_Z* 2qao_Y* 2qba_Y* 2qbc_Y* 2qbe_Y 2qbg_Y 2qbi_Y* 2qbk_Y* 2qov_Y 2qox_Y 2qoz_Y* 2qp1_Y* 2rdo_Y 2vhm_Y ...
Probab=99.30 E-value=4.2e-12 Score=75.65 Aligned_cols=53 Identities=17% Similarity=0.029 Sum_probs=50.4
Q ss_pred CceEEEEEeeeccCCCHHHHHHh-----hcceeEEEEecChhhHHHhhhccccEEEec
Q 047344 1 MKEIGTITKSFKELFNPKIKKIL-----REIFNGIFLKANNTTIHMFHIFKHYITYGY 53 (80)
Q Consensus 1 ~~~~~vIRiRG~~~v~p~v~ktL-----~ki~~~vfvk~~~~~~~ML~~VepYVt~G~ 53 (80)
|+++-|.++||..|.+|+.++|| +++|++|++++||++.||+++|+++|+|-|
T Consensus 1 ~~~lkItlvrS~ig~~~~~r~tl~~LGL~k~~~~v~~~dtp~irGMI~kV~hLV~vee 58 (58)
T 3r8s_Z 1 AKTIKITQTRSAIGRLPKHKATLLGLGLRRIGHTVEREDTPAIRGMINAVSFMVKVEE 58 (58)
T ss_dssp CCEEEEEECSCSTTCCHHHHHHHHHHTCCSTTCCCEEECCHHHHHHHHHTGGGEEEEC
T ss_pred CCeEEEEEeecCCCCCHHHHHHHHHcCCCCCCCEEEecCCHHHHHHHHHHHheEEEeC
Confidence 57899999999999999999999 999999999999999999999999999853
No 10
>2zjr_W 50S ribosomal protein L30; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: d.59.1.1 PDB: 1nwx_X* 1nwy_X* 1pnu_X 1pny_X 1sm1_X* 1vor_Z 1vou_Z 1vow_Z 1voy_Z 1vp0_Z 1xbp_X* 2zjp_W* 2zjq_W 1nkw_X 3cf5_W* 3dll_W* 3pio_W* 3pip_W*
Probab=99.25 E-value=3e-12 Score=75.59 Aligned_cols=49 Identities=12% Similarity=-0.080 Sum_probs=46.8
Q ss_pred EEEEeeeccCCCHHHHHHh-----hcceeEEEEecChhhHHHhhhccccEEEec
Q 047344 5 GTITKSFKELFNPKIKKIL-----REIFNGIFLKANNTTIHMFHIFKHYITYGY 53 (80)
Q Consensus 5 ~vIRiRG~~~v~p~v~ktL-----~ki~~~vfvk~~~~~~~ML~~VepYVt~G~ 53 (80)
-|.++||..|.+++.++|| +++|++|++++||++.||+++|++||+|++
T Consensus 2 kIt~vrS~ig~~~~~r~tl~~LGL~k~~~~v~~~dtp~irGMI~kV~hlV~vee 55 (55)
T 2zjr_W 2 KIKLVRSVIGRPGNQVKTVQALGLRKIGDSREVSDTPAVRGMVKTVKHLLEVQE 55 (55)
T ss_dssp EEEBCSCSTTSCHHHHHHHHHTTCCSTTCEEECCCSHHHHHHHHHTGGGBCCCC
T ss_pred EEEEEecCCCCCHHHHHHHHHhCCCCCCCEEEecCCHHHHHHHHHhHhhEEEeC
Confidence 3689999999999999999 999999999999999999999999999985
No 11
>2qh9_A UPF0215 protein AF_1433; structural genomics, PSI-2, MCSG, PR structure initiative; 1.80A {Archaeoglobus fulgidus}
Probab=45.35 E-value=12 Score=25.50 Aligned_cols=30 Identities=17% Similarity=0.230 Sum_probs=23.0
Q ss_pred hhhHHHhh------hccc-cE-EEecCCHHHHHHHHHhc
Q 047344 36 NTTIHMFH------IFKH-YI-TYGYPNLKNVRELIYMG 66 (80)
Q Consensus 36 ~~~~~ML~------~Vep-YV-t~G~p~l~tvreLi~KR 66 (80)
+...+.++ .++| || .+| .|+++..+++.+.
T Consensus 118 e~~~~~l~~~~~~~~v~pvyV~s~G-i~l~~A~~iv~~~ 155 (184)
T 2qh9_A 118 ELRRKIVEVAGEIHRIGDIYIQTAG-LTPSEAEKLVKAS 155 (184)
T ss_dssp HHHHHHHHHTCCCEEETTEEEEEES-SCHHHHHHHHHHH
T ss_pred eEEEEEEEeCCCccCceeEEEEECC-CCHHHHHHHHHHh
Confidence 44555555 4688 99 889 9999999998764
No 12
>3tha_A Tryptophan synthase alpha chain; structural genomics, center for structural genomics of infec diseases, csgid, lyase; 2.37A {Campylobacter jejuni}
Probab=45.26 E-value=7.1 Score=28.06 Aligned_cols=20 Identities=30% Similarity=0.599 Sum_probs=16.6
Q ss_pred ccccEEEecCCHHHHHHHHH
Q 047344 45 FKHYITYGYPNLKNVRELIY 64 (80)
Q Consensus 45 VepYVt~G~p~l~tvreLi~ 64 (80)
.=||+|-|+||+++-.+++.
T Consensus 16 li~yitaG~P~~~~t~~~~~ 35 (252)
T 3tha_A 16 NVAYTVLGYPNLQTSEAFLQ 35 (252)
T ss_dssp EEEEEETTSSCHHHHHHHHH
T ss_pred eEEEEeCCCCCHHHHHHHHH
Confidence 35899999999998877754
No 13
>3nav_A Tryptophan synthase alpha chain; alpha subunit, structural genomics, CSG center for structural genomics of infectious diseases; 2.10A {Vibrio cholerae o1 biovar el tor} SCOP: c.1.2.4
Probab=40.46 E-value=9.3 Score=27.51 Aligned_cols=19 Identities=21% Similarity=0.394 Sum_probs=15.8
Q ss_pred cccEEEecCCHHHHHHHHH
Q 047344 46 KHYITYGYPNLKNVRELIY 64 (80)
Q Consensus 46 epYVt~G~p~l~tvreLi~ 64 (80)
=||++-|+||+++-.+++.
T Consensus 23 i~yi~aGdP~~~~~~~~~~ 41 (271)
T 3nav_A 23 VPFVTIGDPNPEQSLAIMQ 41 (271)
T ss_dssp EEEEETTSSCHHHHHHHHH
T ss_pred EEEEeCCCCCHHHHHHHHH
Confidence 4799999999998777764
No 14
>3fpn_B Geobacillus stearothermophilus UVRB interaction domain; UVRA, nucleotide excision repair, DNA repair, DNA binding protein; 1.80A {Geobacillus stearothermophilus}
Probab=36.42 E-value=33 Score=21.15 Aligned_cols=28 Identities=18% Similarity=-0.006 Sum_probs=22.5
Q ss_pred cCCHHHHHHHHHhcceeeee-----ceeeecCC
Q 047344 53 YPNLKNVRELIYMGGYTYFF-----LTFARRGN 80 (80)
Q Consensus 53 ~p~l~tvreLi~KRG~~ki~-----~~~~~~~~ 80 (80)
..+.+.+.+.|..-|+-+++ |+|+.||+
T Consensus 22 ~i~~~~l~~~L~~~GY~r~~~v~~~Gef~vRG~ 54 (106)
T 3fpn_B 22 EIERNALLRRLVDIQYDRNDIDFRRGTFRVRGD 54 (106)
T ss_dssp BCCHHHHHHHHHHTTCEECTTCCCTTEEEEETT
T ss_pred CcCHHHHHHHHHHcCCEECCccCCcEEEEEECC
Confidence 36888888888889998765 78998885
No 15
>3vnd_A TSA, tryptophan synthase alpha chain; psychrophilic enzyme, cold adaptation; HET: PE8; 2.60A {Shewanella frigidimarina}
Probab=32.41 E-value=15 Score=26.31 Aligned_cols=20 Identities=25% Similarity=0.426 Sum_probs=16.5
Q ss_pred ccccEEEecCCHHHHHHHHH
Q 047344 45 FKHYITYGYPNLKNVRELIY 64 (80)
Q Consensus 45 VepYVt~G~p~l~tvreLi~ 64 (80)
.=||++-|+||+++..+++.
T Consensus 20 li~yi~aGdP~~~~~~~~~~ 39 (267)
T 3vnd_A 20 FVPFVTIGDPSPELSLKIIQ 39 (267)
T ss_dssp EEEEEETTSSCHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHH
Confidence 45799999999998877764
No 16
>3pg6_A E3 ubiquitin-protein ligase DTX3L; DNA-damage, metal-binding, nucleus, phosphorylation, chromatin regulator, UBL conjugation pathway, zinc-finger; HET: CIT; 1.70A {Homo sapiens}
Probab=31.01 E-value=58 Score=22.27 Aligned_cols=15 Identities=13% Similarity=0.270 Sum_probs=9.6
Q ss_pred EEEEecChhhHHHhh
Q 047344 29 GIFLKANNTTIHMFH 43 (80)
Q Consensus 29 ~vfvk~~~~~~~ML~ 43 (80)
-.|+++|++-...|+
T Consensus 80 ~AYLPdn~eGr~VL~ 94 (159)
T 3pg6_A 80 TAYLPDNKEGRKVLK 94 (159)
T ss_dssp EEEEEESHHHHHHHH
T ss_pred EEECCCCHHHHHHHH
Confidence 357888877555544
No 17
>2jni_A Arenicin-2; peptide, antimicrobial, beta-sheet, antimicrobial protein; NMR {Arenicola marina} PDB: 2l8x_A 2jsb_A
Probab=29.77 E-value=22 Score=17.34 Aligned_cols=9 Identities=0% Similarity=-0.308 Sum_probs=7.0
Q ss_pred EEEEEeeec
Q 047344 4 IGTITKSFK 12 (80)
Q Consensus 4 ~~vIRiRG~ 12 (80)
+|-+||||.
T Consensus 5 yayvrirgv 13 (26)
T 2jni_A 5 YAYVRIRGV 13 (26)
T ss_dssp EEEEEETTE
T ss_pred EEEEEEEEE
Confidence 677899885
No 18
>4evu_A Putative periplasmic protein YDGH; structural genomics, PSI-biology, program for the characteri secreted effector proteins, pcsep; HET: MSE; 1.45A {Salmonella enterica subsp}
Probab=26.32 E-value=41 Score=19.98 Aligned_cols=23 Identities=9% Similarity=-0.106 Sum_probs=21.5
Q ss_pred CceEEEEEeeeccCCCHHHHHHh
Q 047344 1 MKEIGTITKSFKELFNPKIKKIL 23 (80)
Q Consensus 1 ~~~~~vIRiRG~~~v~p~v~ktL 23 (80)
|+++.+|-+.|..+-|+++.+-|
T Consensus 17 lq~~gtVsvsg~~~sp~D~~~~l 39 (72)
T 4evu_A 17 MVPFDSVKFTGNYGNMTEISYQV 39 (72)
T ss_dssp SCCSEEEEEEECCSSHHHHHHHH
T ss_pred CeeccEEEECCccCChHHHHHHH
Confidence 67899999999999999999999
No 19
>2lfp_A Bacteriophage SPP1 complete nucleotide sequence; viral protein; NMR {Bacillus phage SPP1}
Probab=22.22 E-value=34 Score=21.40 Aligned_cols=12 Identities=17% Similarity=0.110 Sum_probs=10.3
Q ss_pred hccccEEEecCC
Q 047344 44 IFKHYITYGYPN 55 (80)
Q Consensus 44 ~VepYVt~G~p~ 55 (80)
..-|||+||+.+
T Consensus 42 ~~~Pyv~lg~~~ 53 (139)
T 2lfp_A 42 DPYPYVVIGDQS 53 (139)
T ss_dssp SCSSEEEEECCT
T ss_pred CCCCEEEEecce
Confidence 567999999876
No 20
>4adn_A FAR1; antibiotic resistance; 1.65A {Staphylococcus aureus} PDB: 4ado_A
Probab=21.55 E-value=35 Score=24.36 Aligned_cols=55 Identities=13% Similarity=0.329 Sum_probs=40.4
Q ss_pred CCCHHHHHHhhcceeEEEEe-cChhhHHHhhhccccE-EEecCCHHHHHHHHHhcceeee
Q 047344 14 LFNPKIKKILREIFNGIFLK-ANNTTIHMFHIFKHYI-TYGYPNLKNVRELIYMGGYTYF 71 (80)
Q Consensus 14 ~v~p~v~ktL~ki~~~vfvk-~~~~~~~ML~~VepYV-t~G~p~l~tvreLi~KRG~~ki 71 (80)
+.+++.++.|.++.+ ++ ..++....|...+||| .+=.++.+.|++++.|--.+++
T Consensus 59 ~~~~eq~~lL~~i~~---~~lt~~~~e~~L~~Lk~yV~pm~~lTe~qIrk~F~kaKkLkl 115 (222)
T 4adn_A 59 HIDDDIEESLKVLMN---IRLSNKEIEAILNKFLEYVVPFELPSPQKLQKVFKKVKKIKI 115 (222)
T ss_dssp SCCHHHHHHHHHHTS---TTCCHHHHHHHHHHHHTTBCCCCCCCHHHHHHHTTTSTTCCC
T ss_pred cCCHHHHHHHHHHhc---ccCCHHHHHHHHHHHHHHHcCCCCCCHHHHHHHhhhhhccCC
Confidence 556777777755555 34 2356888999999999 6777889999999988555554
No 21
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=21.14 E-value=1.9e+02 Score=19.09 Aligned_cols=49 Identities=8% Similarity=0.153 Sum_probs=32.7
Q ss_pred HHHHhhcceeEEEEecChhhHHHhhhc---ccc-EEEecCCHHHHHHHHHhcce
Q 047344 19 IKKILREIFNGIFLKANNTTIHMFHIF---KHY-ITYGYPNLKNVRELIYMGGY 68 (80)
Q Consensus 19 v~ktL~ki~~~vfvk~~~~~~~ML~~V---epY-Vt~G~p~l~tvreLi~KRG~ 68 (80)
+.+.|.+-..+ ++..+.+-...++.. +++ |..-.||.+.+++-|.+||+
T Consensus 85 v~~~l~~g~~v-il~id~~g~~~~k~~~~~~~~~Ifi~pps~e~L~~RL~~Rg~ 137 (186)
T 1ex7_A 85 VKQVSKSGKTC-ILDIDMQGVKSVKAIPELNARFLFIAPPSVEDLKKRLEGRGT 137 (186)
T ss_dssp HHHHHHHTSEE-EEECCHHHHHHHHTCGGGCCEEEEEECSCHHHHHHHHHHHCC
T ss_pred eeehhhCCCEE-EecCCHHHHHHHHHhcccCceEEEEeCCCHHHHHHHHHhcCC
Confidence 45555443444 455666666666654 343 56678899999999999995
Done!