BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 047345
(176 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1RJ1|A Chain A, Crystal Structure Of A Cell Wall Invertase Inhibitor From
Tobacco
pdb|1RJ4|A Chain A, Structure Of A Cell Wall Invertase Inhibitor From Tobacco
In Complex With Cd2+
pdb|1RJ4|B Chain B, Structure Of A Cell Wall Invertase Inhibitor From Tobacco
In Complex With Cd2+
pdb|1RJ4|C Chain C, Structure Of A Cell Wall Invertase Inhibitor From Tobacco
In Complex With Cd2+
pdb|1RJ4|D Chain D, Structure Of A Cell Wall Invertase Inhibitor From Tobacco
In Complex With Cd2+
Length = 151
Score = 91.7 bits (226), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 52/144 (36%), Positives = 77/144 (53%), Gaps = 2/144 (1%)
Query: 30 TRLIKETCKHTEYYNLCVASLESDPRSLNADVKELAIILVELLQAKANETLWHVGDLFKK 89
L++ TCK+T Y LC+ +L SD RS D+ LA+I+V+ ++AKAN+ + L +
Sbjct: 5 NNLVETTCKNTPNYQLCLKTLLSDKRSATGDITTLALIMVDAIKAKANQAAVTISKL-RH 63
Query: 90 VSDPALYRF-YGTCIEEYRAIVERQIPEAIDALQSGDYMVSKKDXXXXXXXXDSCEEQFA 148
+ PA ++ C Y+ I+ +PEAI+AL GD ++ CEE F
Sbjct: 64 SNPPAAWKGPLKNCAFSYKVILTASLPEAIEALTKGDPKFAEDGMVGSSGDAQECEEYFK 123
Query: 149 GETQPFSDQNKAVHGLSLVTSSIL 172
G PFS N AVH LS V +I+
Sbjct: 124 GSKSPFSALNIAVHELSDVGRAIV 147
>pdb|2CJ4|A Chain A, Crystal Structure Of A Cell Wall Invertase Inhibitor From
Tobacco At Ph 4.6
pdb|2CJ4|B Chain B, Crystal Structure Of A Cell Wall Invertase Inhibitor From
Tobacco At Ph 4.6
pdb|2CJ5|A Chain A, Crystal Structure Of A Cell Wall Invertase Inhibitor From
Tobacco (Ph 5.0)
pdb|2CJ6|A Chain A, Crystal Structure Of A Cell Wall Invertase Inhibitor From
Tobacco (Ph 7.5)
pdb|2CJ7|A Chain A, Crystal Structure Of A Cell Wall Invertase Inhibitor From
Tobacco (ph 9.0)
pdb|2CJ8|A Chain A, Crystal Structure Of A Cell Wall Invertase Inhibitor From
Tobacco (Ph 9.5)
pdb|2CJ8|B Chain B, Crystal Structure Of A Cell Wall Invertase Inhibitor From
Tobacco (Ph 9.5)
Length = 150
Score = 91.7 bits (226), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 52/144 (36%), Positives = 77/144 (53%), Gaps = 2/144 (1%)
Query: 30 TRLIKETCKHTEYYNLCVASLESDPRSLNADVKELAIILVELLQAKANETLWHVGDLFKK 89
L++ TCK+T Y LC+ +L SD RS D+ LA+I+V+ ++AKAN+ + L +
Sbjct: 4 NNLVETTCKNTPNYQLCLKTLLSDKRSATGDITTLALIMVDAIKAKANQAAVTISKL-RH 62
Query: 90 VSDPALYRF-YGTCIEEYRAIVERQIPEAIDALQSGDYMVSKKDXXXXXXXXDSCEEQFA 148
+ PA ++ C Y+ I+ +PEAI+AL GD ++ CEE F
Sbjct: 63 SNPPAAWKGPLKNCAFSYKVILTASLPEAIEALTKGDPKFAEDGMVGSSGDAQECEEYFK 122
Query: 149 GETQPFSDQNKAVHGLSLVTSSIL 172
G PFS N AVH LS V +I+
Sbjct: 123 GSKSPFSALNIAVHELSDVGRAIV 146
>pdb|2XQR|B Chain B, Crystal Structure Of Plant Cell Wall Invertase In Complex
With A Specific Protein Inhibitor
pdb|2XQR|D Chain D, Crystal Structure Of Plant Cell Wall Invertase In Complex
With A Specific Protein Inhibitor
pdb|2XQR|F Chain F, Crystal Structure Of Plant Cell Wall Invertase In Complex
With A Specific Protein Inhibitor
pdb|2XQR|H Chain H, Crystal Structure Of Plant Cell Wall Invertase In Complex
With A Specific Protein Inhibitor
pdb|2XQR|J Chain J, Crystal Structure Of Plant Cell Wall Invertase In Complex
With A Specific Protein Inhibitor
pdb|2XQR|L Chain L, Crystal Structure Of Plant Cell Wall Invertase In Complex
With A Specific Protein Inhibitor
Length = 149
Score = 91.3 bits (225), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 52/144 (36%), Positives = 77/144 (53%), Gaps = 2/144 (1%)
Query: 30 TRLIKETCKHTEYYNLCVASLESDPRSLNADVKELAIILVELLQAKANETLWHVGDLFKK 89
L++ TCK+T Y LC+ +L SD RS D+ LA+I+V+ ++AKAN+ + L +
Sbjct: 3 NNLVETTCKNTPNYQLCLKTLLSDKRSATGDITTLALIMVDAIKAKANQAAVTISKL-RH 61
Query: 90 VSDPALYRF-YGTCIEEYRAIVERQIPEAIDALQSGDYMVSKKDXXXXXXXXDSCEEQFA 148
+ PA ++ C Y+ I+ +PEAI+AL GD ++ CEE F
Sbjct: 62 SNPPAAWKGPLKNCAFSYKVILTASLPEAIEALTKGDPKFAEDGMVGSSGDAQECEEYFK 121
Query: 149 GETQPFSDQNKAVHGLSLVTSSIL 172
G PFS N AVH LS V +I+
Sbjct: 122 GSKSPFSALNIAVHELSDVGRAIV 145
>pdb|1XG2|B Chain B, Crystal Structure Of The Complex Between Pectin
Methylesterase And Its Inhibitor Protein
Length = 153
Score = 67.4 bits (163), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 40/120 (33%), Positives = 58/120 (48%), Gaps = 1/120 (0%)
Query: 30 TRLIKETCKHTEYYNLCVASLESDPRSLNADVKELAIILVELLQAKANETLWHVGDLFKK 89
LI E C T +LC+ +LESDPRS + D+K L +++ QA A +T + L +
Sbjct: 3 NHLISEICPKTRNPSLCLQALESDPRSASKDLKGLGQFSIDIAQASAKQTSKIIASLTNQ 62
Query: 90 VSDPALYRFYGTCIEEYRAIVERQIPEAIDALQSGDYMVSKKDXXXXXXXXDSCEEQFAG 149
+DP L Y TC E Y ++ + +A L SGDY +CE+ F G
Sbjct: 63 ATDPKLKGRYETCSENYADAIDS-LGQAKQFLTSGDYNSLNIYASAAFDGAGTCEDSFEG 121
>pdb|1X91|A Chain A, Crystal Structure Of Mutant Form A Of A Pectin
Methylesterase Inhibitor From Arabidopsis
Length = 153
Score = 37.7 bits (86), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/107 (25%), Positives = 49/107 (45%), Gaps = 3/107 (2%)
Query: 37 CKHTEYYNLCVASLESDPRSLNADVKELAIILVELLQAKANETLWHVGDLFKKVSDPALY 96
C T + C+ L + + +A+++ LA ++ QA+A +TL + + DP
Sbjct: 12 CDKTLNPSFCLKFLNT--KFASANLQALAKTTLDSTQARATQTLKKLQSIIDGGVDPRSK 69
Query: 97 RFYGTCIEEYRAIVERQIPEAIDALQSGDYMVSKKDXXXXXXXXDSC 143
Y +C++EY + + + EA + L SGD M D+C
Sbjct: 70 LAYRSCVDEYESAIG-NLEEAFEHLASGDGMGMNMKVSAALDGADTC 115
>pdb|1X90|A Chain A, Crystal Structure Of Mutant Form B Of A Pectin
Methylesterase Inhibitor From Arabidopsis
pdb|1X90|B Chain B, Crystal Structure Of Mutant Form B Of A Pectin
Methylesterase Inhibitor From Arabidopsis
Length = 152
Score = 37.7 bits (86), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/107 (25%), Positives = 49/107 (45%), Gaps = 3/107 (2%)
Query: 37 CKHTEYYNLCVASLESDPRSLNADVKELAIILVELLQAKANETLWHVGDLFKKVSDPALY 96
C T + C+ L + + +A+++ LA ++ QA+A +TL + + DP
Sbjct: 11 CDKTLNPSFCLKFLNT--KFASANLQALAKTTLDSTQARATQTLKKLQSIIDGGVDPRSK 68
Query: 97 RFYGTCIEEYRAIVERQIPEAIDALQSGDYMVSKKDXXXXXXXXDSC 143
Y +C++EY + + + EA + L SGD M D+C
Sbjct: 69 LAYRSCVDEYESAIG-NLEEAFEHLASGDGMGMNMKVSAALDGADTC 114
>pdb|1X8Z|A Chain A, Crystal Structure Of A Pectin Methylesterase Inhibitor
From Arabidopsis Thaliana
pdb|1X8Z|B Chain B, Crystal Structure Of A Pectin Methylesterase Inhibitor
From Arabidopsis Thaliana
pdb|1X8Z|C Chain C, Crystal Structure Of A Pectin Methylesterase Inhibitor
From Arabidopsis Thaliana
Length = 153
Score = 37.0 bits (84), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 28/107 (26%), Positives = 47/107 (43%), Gaps = 3/107 (2%)
Query: 37 CKHTEYYNLCVASLESDPRSLNADVKELAIILVELLQAKANETLWHVGDLFKKVSDPALY 96
C T + C+ L + S N ++ LA ++ QA+A +TL + + DP
Sbjct: 12 CDKTLNPSFCLKFLNTKFASPN--LQALAKTTLDSTQARATQTLKKLQSIIDGGVDPRSK 69
Query: 97 RFYGTCIEEYRAIVERQIPEAIDALQSGDYMVSKKDXXXXXXXXDSC 143
Y +C++EY + + + EA + L SGD M D+C
Sbjct: 70 LAYRSCVDEYESAIG-NLEEAFEHLASGDGMGMNMKVSAALDGADTC 115
>pdb|2O5U|A Chain A, Crystal Structure Of The Pa5185 Protein From Pseudomonas
Aeruginosa Strain Pao1- Orthorhombic Form (c222).
pdb|2O5U|B Chain B, Crystal Structure Of The Pa5185 Protein From Pseudomonas
Aeruginosa Strain Pao1- Orthorhombic Form (c222).
pdb|2O5U|C Chain C, Crystal Structure Of The Pa5185 Protein From Pseudomonas
Aeruginosa Strain Pao1- Orthorhombic Form (c222)
Length = 148
Score = 28.1 bits (61), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 12/43 (27%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
Query: 70 ELLQAKANETLWHVGDLFKKVSDPALYRFYGTCIEEYRAIVER 112
+ L + T WH D++ V++ Y F+ T + Y ++ER
Sbjct: 12 QYLHFQPISTRWHDNDIYGHVNNVTYYAFFDTAVNTY--LIER 52
>pdb|2O6B|A Chain A, Crystal Structure Of The Pa5185 Protein From Pseudomonas
Aeruginosa Strain Pao1- New Crystal Form.
pdb|2O6B|B Chain B, Crystal Structure Of The Pa5185 Protein From Pseudomonas
Aeruginosa Strain Pao1- New Crystal Form.
pdb|2O6T|A Chain A, Crystal Structure Of The Pa5185 Protein From Pseudomonas
Aeruginosa Strain Pao1- Orthorhombic Form (P2221).
pdb|2O6T|C Chain C, Crystal Structure Of The Pa5185 Protein From Pseudomonas
Aeruginosa Strain Pao1- Orthorhombic Form (P2221).
pdb|2O6T|E Chain E, Crystal Structure Of The Pa5185 Protein From Pseudomonas
Aeruginosa Strain Pao1- Orthorhombic Form (P2221).
pdb|2O6T|G Chain G, Crystal Structure Of The Pa5185 Protein From Pseudomonas
Aeruginosa Strain Pao1- Orthorhombic Form (P2221).
pdb|2O6T|I Chain I, Crystal Structure Of The Pa5185 Protein From Pseudomonas
Aeruginosa Strain Pao1- Orthorhombic Form (P2221).
pdb|2O6T|K Chain K, Crystal Structure Of The Pa5185 Protein From Pseudomonas
Aeruginosa Strain Pao1- Orthorhombic Form (P2221).
pdb|2O6U|A Chain A, Crystal Structure Of The Pa5185 Protein From Pseudomonas
Aeruginosa Strain Pao1- New Crystal Form.
pdb|2O6U|B Chain B, Crystal Structure Of The Pa5185 Protein From Pseudomonas
Aeruginosa Strain Pao1- New Crystal Form
Length = 149
Score = 28.1 bits (61), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 12/43 (27%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
Query: 70 ELLQAKANETLWHVGDLFKKVSDPALYRFYGTCIEEYRAIVER 112
+ L + T WH D++ V++ Y F+ T + Y ++ER
Sbjct: 13 QYLHFQPISTRWHDNDIYGHVNNVTYYAFFDTAVNTY--LIER 53
>pdb|2AV9|A Chain A, Crystal Structure Of The Pa5185 Protein From Pseudomonas
Aeruginosa Strain Pao1.
pdb|2AV9|B Chain B, Crystal Structure Of The Pa5185 Protein From Pseudomonas
Aeruginosa Strain Pao1.
pdb|2AV9|C Chain C, Crystal Structure Of The Pa5185 Protein From Pseudomonas
Aeruginosa Strain Pao1.
pdb|2AV9|D Chain D, Crystal Structure Of The Pa5185 Protein From Pseudomonas
Aeruginosa Strain Pao1.
pdb|2AV9|E Chain E, Crystal Structure Of The Pa5185 Protein From Pseudomonas
Aeruginosa Strain Pao1.
pdb|2AV9|F Chain F, Crystal Structure Of The Pa5185 Protein From Pseudomonas
Aeruginosa Strain Pao1.
pdb|2AV9|G Chain G, Crystal Structure Of The Pa5185 Protein From Pseudomonas
Aeruginosa Strain Pao1.
pdb|2AV9|H Chain H, Crystal Structure Of The Pa5185 Protein From Pseudomonas
Aeruginosa Strain Pao1.
pdb|2AV9|I Chain I, Crystal Structure Of The Pa5185 Protein From Pseudomonas
Aeruginosa Strain Pao1.
pdb|2AV9|J Chain J, Crystal Structure Of The Pa5185 Protein From Pseudomonas
Aeruginosa Strain Pao1.
pdb|2AV9|K Chain K, Crystal Structure Of The Pa5185 Protein From Pseudomonas
Aeruginosa Strain Pao1.
pdb|2AV9|L Chain L, Crystal Structure Of The Pa5185 Protein From Pseudomonas
Aeruginosa Strain Pao1
Length = 147
Score = 28.1 bits (61), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 12/43 (27%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
Query: 70 ELLQAKANETLWHVGDLFKKVSDPALYRFYGTCIEEYRAIVER 112
+ L + T WH D++ V++ Y F+ T + Y ++ER
Sbjct: 11 QYLHFQPISTRWHDNDIYGHVNNVTYYAFFDTAVNTY--LIER 51
>pdb|2PB0|A Chain A, Structure Of Biosynthetic N-Acetylornithine
Aminotransferase From Salmonella Typhimurium: Studies On
Substrate Specificity And Inhibitor Binding
pdb|2PB0|B Chain B, Structure Of Biosynthetic N-Acetylornithine
Aminotransferase From Salmonella Typhimurium: Studies On
Substrate Specificity And Inhibitor Binding
pdb|2PB2|A Chain A, Structure Of Biosynthetic N-Acetylornithine
Aminotransferase From Salmonella Typhimurium: Studies On
Substrate Specificity And Inhibitor Binding
pdb|2PB2|B Chain B, Structure Of Biosynthetic N-Acetylornithine
Aminotransferase From Salmonella Typhimurium: Studies On
Substrate Specificity And Inhibitor Binding
Length = 420
Score = 27.3 bits (59), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 28/106 (26%), Positives = 46/106 (43%), Gaps = 15/106 (14%)
Query: 68 LVELLQAKANETLWHVGDLFKKVSDPALYRFYGTCIEEYRAIVERQIPEAIDALQSGDYM 127
LVE L+++ ETLWH ++F ++PAL R +++ E + + SG
Sbjct: 78 LVEALKSQ-GETLWHTSNVF--TNEPAL--------RLGRKLIDATFAERVLFMNSG--- 123
Query: 128 VSKKDXXXXXXXXDSCEEQFAGETQPFSDQNKAVHGLSLVTSSILG 173
+ +C +T+ + N A HG SL T S+ G
Sbjct: 124 TEANETAFKLARHYACVRHSPFKTKIIAFHN-AFHGRSLFTVSVGG 168
>pdb|1D7M|A Chain A, Coiled-Coil Dimerization Domain From Cortexillin I
pdb|1D7M|B Chain B, Coiled-Coil Dimerization Domain From Cortexillin I
Length = 101
Score = 27.3 bits (59), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 43/84 (51%), Gaps = 13/84 (15%)
Query: 37 CKHTEYYNLCVASLESDPRSLNADVKELAIILVELLQAKANETLWHVGDLFKKVSDPALY 96
K + N +ASLES+ ++E L+AK +ETL ++ +K++ L
Sbjct: 24 IKQKDQLNSLLASLESEGAEREKRLRE--------LEAKLDETLKNLE--LEKLARMELE 73
Query: 97 -RFYGTCIEEYRAIVERQIPEAID 119
R T E+ RAI+E ++ EAID
Sbjct: 74 ARLAKT--EKDRAILELKLAEAID 95
>pdb|3SXR|A Chain A, Crystal Structure Of Bmx Non-Receptor Tyrosine Kinase
Complex With Dasatinib
pdb|3SXR|B Chain B, Crystal Structure Of Bmx Non-Receptor Tyrosine Kinase
Complex With Dasatinib
pdb|3SXS|A Chain A, Crystal Structure Of Bmx Non-Receptor Tyrosine Kinase
Complexed With Pp2
Length = 268
Score = 27.3 bits (59), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 10/18 (55%), Positives = 13/18 (72%)
Query: 89 KVSDPALYRFYGTCIEEY 106
K+S P L +FYG C +EY
Sbjct: 59 KLSHPKLVKFYGVCSKEY 76
>pdb|1I7F|A Chain A, Crystal Structure Of The Hsp33 Domain With Constitutive
Chaperone Activity
Length = 292
Score = 26.6 bits (57), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 29/61 (47%), Gaps = 8/61 (13%)
Query: 70 ELLQAKANETLWHVGDLFKK----VSDPALYRFYGTCIEEYRAIVERQIP-EAIDALQSG 124
ELL ANE LW L+ + V DP F TC E A + +P E +D++ +
Sbjct: 199 ELLTLPANEVLWR---LYHEEEVTVYDPQDVEFKCTCSRERSADALKTLPDEEVDSILAE 255
Query: 125 D 125
D
Sbjct: 256 D 256
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.134 0.383
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,031,147
Number of Sequences: 62578
Number of extensions: 126687
Number of successful extensions: 297
Number of sequences better than 100.0: 15
Number of HSP's better than 100.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 281
Number of HSP's gapped (non-prelim): 15
length of query: 176
length of database: 14,973,337
effective HSP length: 92
effective length of query: 84
effective length of database: 9,216,161
effective search space: 774157524
effective search space used: 774157524
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 48 (23.1 bits)