Query 047345
Match_columns 176
No_of_seqs 140 out of 936
Neff 8.8
Searched_HMMs 29240
Date Mon Mar 25 17:57:03 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047345.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/047345hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2cj4_A Invertase inhibitor; pr 100.0 6.6E-36 2.3E-40 216.2 16.5 146 29-175 3-149 (150)
2 1xg2_B Pectinesterase inhibito 100.0 8.3E-35 2.8E-39 210.8 16.9 146 30-176 3-151 (153)
3 1x91_A Invertase/pectin methyl 100.0 4.7E-34 1.6E-38 207.0 14.2 145 29-176 4-151 (153)
4 3iqc_A FLIS, flagellar protein 65.3 13 0.00045 25.1 5.1 27 58-84 22-48 (131)
5 1vh6_A Flagellar protein FLIS; 63.5 15 0.0005 25.4 5.1 27 58-84 19-45 (145)
6 1orj_A Flagellar protein FLIS; 55.4 45 0.0015 22.5 7.4 26 58-83 15-40 (130)
7 1co7_I BPTI, bovine pancreatic 30.7 12 0.0004 24.1 0.2 20 31-50 33-52 (99)
8 1g92_A Poneratoxin, PAC-TX; ne 25.0 21 0.00072 16.4 0.5 11 8-18 1-11 (26)
9 3dxr_B Mitochondrial import in 23.6 1.4E+02 0.0049 18.8 4.5 31 91-122 56-86 (95)
10 2e2a_A Protein (enzyme IIA); h 20.4 1.5E+02 0.0052 19.0 4.2 21 113-133 23-43 (105)
No 1
>2cj4_A Invertase inhibitor; protein binding, four-helix bundle, helical hairpin; 1.63A {Nicotiana tabacum} SCOP: a.29.6.1 PDB: 2cj5_A 2cj6_A 2cj7_A 2cj8_A 1rj1_A 1rj4_A* 2xqr_B*
Probab=100.00 E-value=6.6e-36 Score=216.16 Aligned_cols=146 Identities=36% Similarity=0.561 Sum_probs=137.9
Q ss_pred hhhHHHHHhcCCCCcchhhhhcccCCCCccCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCHHHHHHHHHHHHHHHH
Q 047345 29 KTRLIKETCKHTEYYNLCVASLESDPRSLNADVKELAIILVELLQAKANETLWHVGDLFKKVSDPALYRFYGTCIEEYRA 108 (176)
Q Consensus 29 ~~~~i~~~C~~t~~~~~C~~~L~~~p~s~~ad~~~l~~~ai~~a~~~a~~~~~~i~~l~~~~~~~~~~~al~~C~~~y~~ 108 (176)
+.+.|+.+|++|+||++|+++|.++|++..+|+++|+.++++++..++..+..+++++.+..++++.+.+|++|.++|++
T Consensus 3 ~~~~I~~~C~~T~~~~~C~~sL~~~~~s~~ad~~~la~~ai~~~~~~a~~~~~~i~~l~~~~~~~~~~~al~dC~e~y~~ 82 (150)
T 2cj4_A 3 MNNLVETTCKNTPNYQLCLKTLLSDKRSATGDITTLALIMVDAIKAKANQAAVTISKLRHSNPPAAWKGPLKNCAFSYKV 82 (150)
T ss_dssp -CHHHHHHHHTSSCHHHHHHHHHTSGGGTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCCGGGHHHHHHHHHHHHH
T ss_pred chHHHHHHHcCCCCccHHHHHHhcCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHH
Confidence 45799999999999999999999999988789999999999999999999999999998776688999999999999999
Q ss_pred HH-HhhHHHHHHHHhCCChhhHHHHHHHHHhcHhHHHhhcCCCCCchhHhhHHHHHHHHHHHHHHHhh
Q 047345 109 IV-ERQIPEAIDALQSGDYMVSKKDAEAAAAHADSCEEQFAGETQPFSDQNKAVHGLSLVTSSILGIL 175 (176)
Q Consensus 109 a~-~~~L~~a~~~l~~~~~~~~~~~lsaa~~~~~tC~d~f~~~~~pl~~~~~~~~~l~~ial~i~~~l 175 (176)
++ + .|++++..++.++|+++++|+|+|++++++|+|||+|.++||..++.++.+|++|+|+|++.|
T Consensus 83 a~~~-~L~~a~~~l~~~~~~~~~t~lsaAlt~~~tC~dgf~~~~~pl~~~~~~~~~l~s~aLaii~~l 149 (150)
T 2cj4_A 83 ILTA-SLPEAIEALTKGDPKFAEDGMVGSSGDAQECEEYFKGSKSPFSALNIAVHELSDVGRAIVRNL 149 (150)
T ss_dssp HHHT-HHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHTTTTSCCTTHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHH-HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHHHHHHhh
Confidence 99 5 999999999999999999999999999999999999777899999999999999999999876
No 2
>1xg2_B Pectinesterase inhibitor; protein-protein complex, beta helix,four helix bundle, hydrolase/hydrolase inhibitor complex; 1.90A {Actinidia chinensis}
Probab=100.00 E-value=8.3e-35 Score=210.79 Aligned_cols=146 Identities=32% Similarity=0.486 Sum_probs=137.5
Q ss_pred hhHHHHHhcCCCCcchhhhhcccCCCCccCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCHHHHHHHHHHHHHHHHH
Q 047345 30 TRLIKETCKHTEYYNLCVASLESDPRSLNADVKELAIILVELLQAKANETLWHVGDLFKKVSDPALYRFYGTCIEEYRAI 109 (176)
Q Consensus 30 ~~~i~~~C~~t~~~~~C~~~L~~~p~s~~ad~~~l~~~ai~~a~~~a~~~~~~i~~l~~~~~~~~~~~al~~C~~~y~~a 109 (176)
.+.|+.+|++|+||++|+++|.++|++..+|+++|+.++++++..++..+..+++++.+..++|+.+.+|++|.++|+++
T Consensus 3 ~~~i~~~C~~T~~~~~C~~sL~~~~~~~~~~~~~l~~~ai~~~~~~a~~~~~~~~~l~~~~~~~~~~~al~dC~e~y~~a 82 (153)
T 1xg2_B 3 NHLISEICPKTRNPSLCLQALESDPRSASKDLKGLGQFSIDIAQASAKQTSKIIASLTNQATDPKLKGRYETCSENYADA 82 (153)
T ss_dssp CHHHHHHGGGSSCHHHHHHHHHTCTTGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHH
T ss_pred HhHHHHHhcCCCChHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHH
Confidence 46899999999999999999999999888899999999999999999999999999987666899999999999999999
Q ss_pred HHhhHHHHHHHHhCCChhhHHHHHHHHHhcHhHHHhhcCCC---CCchhHhhHHHHHHHHHHHHHHHhhC
Q 047345 110 VERQIPEAIDALQSGDYMVSKKDAEAAAAHADSCEEQFAGE---TQPFSDQNKAVHGLSLVTSSILGILG 176 (176)
Q Consensus 110 ~~~~L~~a~~~l~~~~~~~~~~~lsaa~~~~~tC~d~f~~~---~~pl~~~~~~~~~l~~ial~i~~~l~ 176 (176)
+ ++|++++..++.++|+++++|+|+|+++++||+|||.+. ++||..++.++.+|++|+|+|+++|+
T Consensus 83 ~-~~L~~a~~~l~~~~~~d~~t~lSaAlt~~~tC~dgf~~~~~~~~~l~~~~~~~~~l~s~aLai~~~l~ 151 (153)
T 1xg2_B 83 I-DSLGQAKQFLTSGDYNSLNIYASAAFDGAGTCEDSFEGPPNIPTQLHQADLKLEDLCDIVLVISNLLP 151 (153)
T ss_dssp H-HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHCCSSSCCCHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred H-HHHHHHHHHHHhCCHHHHHHHHHHHhcccchHHHHhccCCCCCcHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 9 599999999999999999999999999999999999953 57899999999999999999999874
No 3
>1x91_A Invertase/pectin methylesterase inhibitor family protein; four-helix bundle, alpha hairpin, disulfide bridge, domain- swapping, linker; 1.50A {Arabidopsis thaliana} SCOP: a.29.6.1 PDB: 1x8z_A 1x90_A
Probab=100.00 E-value=4.7e-34 Score=206.95 Aligned_cols=145 Identities=23% Similarity=0.373 Sum_probs=134.1
Q ss_pred hhhHHHHHhcCCCCcchhhhhcccCCCCccCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCHHHHHHHHHHHHHHHH
Q 047345 29 KTRLIKETCKHTEYYNLCVASLESDPRSLNADVKELAIILVELLQAKANETLWHVGDLFKKVSDPALYRFYGTCIEEYRA 108 (176)
Q Consensus 29 ~~~~i~~~C~~t~~~~~C~~~L~~~p~s~~ad~~~l~~~ai~~a~~~a~~~~~~i~~l~~~~~~~~~~~al~~C~~~y~~ 108 (176)
+.+.|+.+|++|+||++|+++| +|++..+|+++|+.++++++..++..+..+++++.+...+++.+.+|++|.++|++
T Consensus 4 ~~~~i~~~C~~T~~~~~C~~sL--~p~~~~~~~~~l~~~a~~~~~~~a~~~~~~~~~l~~~~~~~~~~~al~dC~e~y~~ 81 (153)
T 1x91_A 4 DSSEMSTICDKTLNPSFCLKFL--NTKFASANLQALAKTTLDSTQARATQTLKKLQSIIDGGVDPRSKLAYRSCVDEYES 81 (153)
T ss_dssp -CCSTTTGGGGSSCHHHHHHHH--HHTTCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHhCCCCChhHHHHHh--CcCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 4568999999999999999999 56666679999999999999999999999999998776689999999999999999
Q ss_pred HHHhhHHHHHHHHhCCChhhHHHHHHHHHhcHhHHHhhcCC---CCCchhHhhHHHHHHHHHHHHHHHhhC
Q 047345 109 IVERQIPEAIDALQSGDYMVSKKDAEAAAAHADSCEEQFAG---ETQPFSDQNKAVHGLSLVTSSILGILG 176 (176)
Q Consensus 109 a~~~~L~~a~~~l~~~~~~~~~~~lsaa~~~~~tC~d~f~~---~~~pl~~~~~~~~~l~~ial~i~~~l~ 176 (176)
++ ++|++++..++.++|+++++|+|+|+++++||+|||++ .++||..++.++.+|++|+|+|++.|.
T Consensus 82 a~-~~L~~a~~~l~~~~~~d~~t~lSaAlt~~~tC~dgf~~~~~~~~~l~~~~~~~~~l~s~aLai~~~l~ 151 (153)
T 1x91_A 82 AI-GNLEEAFEHLASGDGMGMNMKVSAALDGADTCLDDVKRLRSVDSSVVNNSKTIKNLCGIALVISNMLP 151 (153)
T ss_dssp HH-HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred HH-HHHHHHHHHHHhcCHHHHHHHHHHHHccHhHHHHHhccCCCCcCHHHHHhHHHHHHHHHHHHHHHHcc
Confidence 99 59999999999999999999999999999999999995 357899999999999999999999873
No 4
>3iqc_A FLIS, flagellar protein; chaperone, flagellum; 2.70A {Helicobacter pylori} SCOP: a.24.19.0 PDB: 3k1i_A
Probab=65.33 E-value=13 Score=25.14 Aligned_cols=27 Identities=11% Similarity=0.019 Sum_probs=20.1
Q ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 047345 58 NADVKELAIILVELLQAKANETLWHVG 84 (176)
Q Consensus 58 ~ad~~~l~~~ai~~a~~~a~~~~~~i~ 84 (176)
+++|.+|..+-.+-+++....+...+.
T Consensus 22 tasP~~Li~mLydgal~~l~~A~~ai~ 48 (131)
T 3iqc_A 22 VESPAKLIEMLYEGILRFSSQAKRCIE 48 (131)
T ss_dssp -CCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 468888888888888877777776654
No 5
>1vh6_A Flagellar protein FLIS; structural genomics, unknown function; HET: MSE; 2.50A {Bacillus subtilis} SCOP: a.24.19.1
Probab=63.52 E-value=15 Score=25.43 Aligned_cols=27 Identities=15% Similarity=0.015 Sum_probs=18.6
Q ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 047345 58 NADVKELAIILVELLQAKANETLWHVG 84 (176)
Q Consensus 58 ~ad~~~l~~~ai~~a~~~a~~~~~~i~ 84 (176)
+++|.+|+.+..+-+++....+...+.
T Consensus 19 tAsP~~Li~mLydgal~~l~~A~~aie 45 (145)
T 1vh6_A 19 TATPGELTLMLYNGCLKFIRLAAQAIE 45 (145)
T ss_dssp -CCTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457778877777777777776666554
No 6
>1orj_A Flagellar protein FLIS; flagellin, flagellar export, chaperone, flagellum, four HELI; 2.25A {Aquifex aeolicus} SCOP: a.24.19.1 PDB: 1ory_A
Probab=55.44 E-value=45 Score=22.46 Aligned_cols=26 Identities=15% Similarity=0.009 Sum_probs=19.4
Q ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHH
Q 047345 58 NADVKELAIILVELLQAKANETLWHV 83 (176)
Q Consensus 58 ~ad~~~l~~~ai~~a~~~a~~~~~~i 83 (176)
+++|.+|..+..+-+++....+...+
T Consensus 15 tAsP~~Li~mLydgai~~l~~A~~ai 40 (130)
T 1orj_A 15 TATPLEQIILLYDKAIECLERAIEIY 40 (130)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHTG
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46888888888888877777666544
No 7
>1co7_I BPTI, bovine pancreatic trypsin inhibitor; complex (serine protease/inhibitor), hydrolase/hydrolase inhibitor complex; 1.90A {Bos taurus} SCOP: g.8.1.1
Probab=30.70 E-value=12 Score=24.07 Aligned_cols=20 Identities=20% Similarity=0.393 Sum_probs=6.6
Q ss_pred hHHHHHhcCCCCcchhhhhc
Q 047345 31 RLIKETCKHTEYYNLCVASL 50 (176)
Q Consensus 31 ~~i~~~C~~t~~~~~C~~~L 50 (176)
......|..-+++..|...+
T Consensus 33 ~~~~~~C~~p~~~G~C~~~~ 52 (99)
T 1co7_I 33 AQRPDFCLEPPYTGPCKARI 52 (99)
T ss_dssp ----------CCCCSBCCCE
T ss_pred CCCCccCCCCCcCCCCCCce
Confidence 35677898877777776544
No 8
>1g92_A Poneratoxin, PAC-TX; neurotoxin, sodium channel inhibitor; NMR {Synthetic} SCOP: j.19.1.2
Probab=24.99 E-value=21 Score=16.43 Aligned_cols=11 Identities=45% Similarity=0.875 Sum_probs=7.8
Q ss_pred HHHHHHHHhhh
Q 047345 8 FVPLLLQSSIS 18 (176)
Q Consensus 8 ~~~ll~~~~~~ 18 (176)
|++||++.|+.
T Consensus 1 flpllilgsll 11 (26)
T 1g92_A 1 FLPLLILGSLL 11 (26)
T ss_dssp CHHHHHHHTCS
T ss_pred CchHHHHHHHh
Confidence 57788877654
No 9
>3dxr_B Mitochondrial import inner membrane translocase subunit TIM10; alpha-propeller, helix-turn-helix, intramolecular disulfides., chaperone; 2.50A {Saccharomyces cerevisiae}
Probab=23.64 E-value=1.4e+02 Score=18.81 Aligned_cols=31 Identities=13% Similarity=0.231 Sum_probs=24.4
Q ss_pred CCHHHHHHHHHHHHHHHHHHHhhHHHHHHHHh
Q 047345 91 SDPALYRFYGTCIEEYRAIVERQIPEAIDALQ 122 (176)
Q Consensus 91 ~~~~~~~al~~C~~~y~~a~~~~L~~a~~~l~ 122 (176)
.+..+..+++.|.+-|-++- ..+.+.+..+.
T Consensus 56 L~~~E~~Ci~~Cv~Ky~d~~-~~V~~~~q~~~ 86 (95)
T 3dxr_B 56 LNKNESSCLDRCVAKYFETN-VQVGENMQKMG 86 (95)
T ss_dssp CCHHHHHHHHHHHHHHHHHH-HHHHHHHHHC-
T ss_pred CCchHHHHHHHHHHHHHHHH-HHHHHHHHHHH
Confidence 46788999999999999997 47777776554
No 10
>2e2a_A Protein (enzyme IIA); helical bundles, PTS, transferase, phosphotransferase system; 2.10A {Lactococcus lactis} SCOP: a.7.2.1 PDB: 1e2a_A
Probab=20.43 E-value=1.5e+02 Score=19.03 Aligned_cols=21 Identities=24% Similarity=0.428 Sum_probs=10.2
Q ss_pred hHHHHHHHHhCCChhhHHHHH
Q 047345 113 QIPEAIDALQSGDYMVSKKDA 133 (176)
Q Consensus 113 ~L~~a~~~l~~~~~~~~~~~l 133 (176)
..-+|++..+.|+|+.++..+
T Consensus 23 ~~~eAl~~Ak~g~fe~A~~~l 43 (105)
T 2e2a_A 23 KLLEALKAAENGDFAKADSLV 43 (105)
T ss_dssp HHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHH
Confidence 334444455555555554433
Done!