BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters
Threshold: 0.001
Maximum number of alignments shown: 100
BLAST filter: on

Query Sequence

>047352
ALNQIEGLCNDTRLIVTRLGKWSIGGDIISGTNIGQNVTIPRIIMSPNESRWPFKLNRRQ
LPLAPCFAMTINKSQGQSLKYVGLYLPKQVFTNVFVKALTNLLTEKTTCSLHNALEFWTP
YIHMSILWCHFMVRGTEQENQKGLTSQIHILLYGRSCTDSIHERNTTFTQISSRGRFCTK
GF

High Scoring Gene Products

Symbol, full name Information P value
AT5G28780 protein from Arabidopsis thaliana 1.6e-22
AT3G51690 protein from Arabidopsis thaliana 4.4e-14
AT3G51700 protein from Arabidopsis thaliana 1.4e-13

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Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  047352
        (182 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2184256 - symbol:AT5G28780 "AT5G28780" species...   261  1.6e-22   1
TAIR|locus:2098292 - symbol:AT3G51690 "AT3G51690" species...   185  4.4e-14   1
TAIR|locus:2098297 - symbol:AT3G51700 "AT3G51700" species...   181  1.4e-13   1


>TAIR|locus:2184256 [details] [associations]
            symbol:AT5G28780 "AT5G28780" species:3702 "Arabidopsis
            thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005634
            "nucleus" evidence=ISM] [GO:0008150 "biological_process"
            evidence=ND] EMBL:CP002688 GO:GO:0004386 KO:K15255
            InterPro:IPR010285 Pfam:PF05970 IPI:IPI00538073 RefSeq:NP_198230.1
            UniGene:At.51417 ProteinModelPortal:F4KA12
            EnsemblPlants:AT5G28780.1 GeneID:832993 KEGG:ath:AT5G28780
            OMA:APNTHES PhylomeDB:F4KA12 Uniprot:F4KA12
        Length = 337

 Score = 261 (96.9 bits), Expect = 1.6e-22, P = 1.6e-22
 Identities = 53/92 (57%), Positives = 67/92 (72%)

Query:     3 NQIEGLCNDTRLIVTRLGKWSIGGDIISGTNIGQNVTIPRIIMSPNESRWPFKLNRRQLP 62
             NQ EGLCN TRLIVT LG+  I   I++GT+ G+ V+IPR I+SP +S  PF L R+Q P
Sbjct:   199 NQKEGLCNGTRLIVTNLGEQVIEAQIVTGTHAGKMVSIPRFILSPPQSEHPFTLRRQQFP 258

Query:    63 LAPCFAMTINKSQGQSLKYVGLYLPKQVFTNV 94
             +  C+AMTI K+QGQSLK   LYLP  VF++V
Sbjct:   259 MRVCYAMTIIKNQGQSLKSDVLYLPNPVFSHV 290


>TAIR|locus:2098292 [details] [associations]
            symbol:AT3G51690 "AT3G51690" species:3702 "Arabidopsis
            thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005634
            "nucleus" evidence=ISM] [GO:0008150 "biological_process"
            evidence=ND] EMBL:CP002686 GO:GO:0004386 KO:K15255
            InterPro:IPR010285 Pfam:PF05970 EMBL:DQ132699 EMBL:DQ446757
            IPI:IPI00852275 RefSeq:NP_190737.2 UniGene:At.53894
            ProteinModelPortal:Q45GK3 SMR:Q45GK3 EnsemblPlants:AT3G51690.1
            GeneID:824332 KEGG:ath:AT3G51690 TAIR:At3g51690 InParanoid:Q45GK3
            PhylomeDB:Q45GK3 ProtClustDB:CLSN2684625 Genevestigator:Q45GK3
            Uniprot:Q45GK3
        Length = 331

 Score = 185 (70.2 bits), Expect = 4.4e-14, P = 4.4e-14
 Identities = 40/92 (43%), Positives = 57/92 (61%)

Query:     2 LNQIEGLCNDTRLIVTRLGKWSIGGDIISGTNIGQNVTIPRIIMSPNESRWPFKLNRRQL 61
             L+   G    TRL +TRL  + +   II+G   G+ + IPRI   P E+ +P ++ R Q 
Sbjct:   196 LDPSRGFFTGTRLQITRLCGFLLEAMIIAGNKHGKKIWIPRIASYPTETNFPLQMRRTQY 255

Query:    62 PLAPCFAMTINKSQGQSLKYVGLYLPKQVFTN 93
             PL   FAMTI++SQ  +L  VGLYLP+QVF++
Sbjct:   256 PLKLAFAMTIDESQVHTLSKVGLYLPRQVFSH 287


>TAIR|locus:2098297 [details] [associations]
            symbol:AT3G51700 "AT3G51700" species:3702 "Arabidopsis
            thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005634
            "nucleus" evidence=ISM] [GO:0008150 "biological_process"
            evidence=ND] EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0004386
            EMBL:AL132968 KO:K15255 InterPro:IPR010285 Pfam:PF05970
            ProtClustDB:CLSN2684625 IPI:IPI00546133 PIR:T46066
            RefSeq:NP_190738.1 UniGene:At.35362 ProteinModelPortal:Q9SCT8
            EnsemblPlants:AT3G51700.1 GeneID:824333 KEGG:ath:AT3G51700
            TAIR:At3g51700 eggNOG:NOG238239 HOGENOM:HOG000067940
            InParanoid:Q9SCT8 OMA:THASPND PhylomeDB:Q9SCT8
            Genevestigator:Q9SCT8 Uniprot:Q9SCT8
        Length = 344

 Score = 181 (68.8 bits), Expect = 1.4e-13, P = 1.4e-13
 Identities = 37/79 (46%), Positives = 54/79 (68%)

Query:    12 TRLIVTRLGKWSIGGDIISGTNIGQNVTIPRIIMSPNESRWPFKLNRRQLPLAPCFAMTI 71
             TRL +TR+  + +   II+G N G+ V IPRI     E+++P K+ RRQ P+   FAMTI
Sbjct:   210 TRLQITRVETFVLEAMIITGNNHGEKVLIPRIPSDLREAKFPIKMRRRQFPVKLAFAMTI 269

Query:    72 NKSQGQSLKYVGLYLPKQV 90
             ++SQ Q+L  VG+YLP+Q+
Sbjct:   270 DESQRQTLSKVGIYLPRQL 288


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.323   0.137   0.431    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      182       182   0.00098  109 3  11 22  0.38    32
                                                     31  0.40    35


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  3
  No. of states in DFA:  606 (64 KB)
  Total size of DFA:  169 KB (2099 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  14.74u 0.09s 14.83t   Elapsed:  00:00:01
  Total cpu time:  14.74u 0.09s 14.83t   Elapsed:  00:00:01
  Start:  Sat May 11 04:55:21 2013   End:  Sat May 11 04:55:22 2013

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