BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 047352
         (182 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1W36|D Chain D, Recbcd:dna Complex
 pdb|1W36|G Chain G, Recbcd:dna Complex
 pdb|3K70|D Chain D, Crystal Structure Of The Complete Initiation Complex Of
           Recbcd
 pdb|3K70|G Chain G, Crystal Structure Of The Complete Initiation Complex Of
           Recbcd
          Length = 608

 Score = 28.5 bits (62), Expect = 2.0,   Method: Composition-based stats.
 Identities = 11/23 (47%), Positives = 15/23 (65%)

Query: 67  FAMTINKSQGQSLKYVGLYLPKQ 89
           +AMT++KSQG    +  L LP Q
Sbjct: 534 WAMTVHKSQGSEFDHAALILPSQ 556


>pdb|4D93|A Chain A, Crystal Structure Of Tep1s
 pdb|4D93|B Chain B, Crystal Structure Of Tep1s
 pdb|4D93|C Chain C, Crystal Structure Of Tep1s
          Length = 1323

 Score = 26.9 bits (58), Expect = 6.7,   Method: Composition-based stats.
 Identities = 17/51 (33%), Positives = 23/51 (45%), Gaps = 1/51 (1%)

Query: 67  FAMTINKSQGQSLKYVGLYLPKQVFTNVFVKALTNLLTEKTTCSLHNALEF 117
           F + INK      K +   L   + T V +K L NLL   T C   N ++F
Sbjct: 797 FNLDINKKADNGSKKIEFRLNPNLLTMV-IKNLDNLLAVPTGCGEQNMVKF 846


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.323    0.137    0.431 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,900,842
Number of Sequences: 62578
Number of extensions: 173630
Number of successful extensions: 278
Number of sequences better than 100.0: 5
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 274
Number of HSP's gapped (non-prelim): 5
length of query: 182
length of database: 14,973,337
effective HSP length: 93
effective length of query: 89
effective length of database: 9,153,583
effective search space: 814668887
effective search space used: 814668887
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 48 (23.1 bits)