BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 047352
         (182 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q0R4F1|PIF1_XENLA ATP-dependent DNA helicase PIF1 OS=Xenopus laevis GN=pif1 PE=2 SV=1
          Length = 635

 Score = 36.2 bits (82), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 21/51 (41%), Positives = 32/51 (62%), Gaps = 8/51 (15%)

Query: 44  IMSPNESRWPFK------LNRRQLPLAPCFAMTINKSQGQSLKYVGLYLPK 88
           ++ P+  RW FK      L+R+QLPL   +A++I+KSQG SL  V + L +
Sbjct: 524 VIKPD--RWVFKGHGGIYLSRQQLPLKLAWAISIHKSQGMSLDCVEISLSR 572


>sp|Q7ZV90|PIF1_DANRE ATP-dependent DNA helicase PIF1 OS=Danio rerio GN=pif1 PE=2 SV=1
          Length = 639

 Score = 35.8 bits (81), Expect = 0.14,   Method: Composition-based stats.
 Identities = 19/44 (43%), Positives = 28/44 (63%), Gaps = 6/44 (13%)

Query: 51  RWPFK------LNRRQLPLAPCFAMTINKSQGQSLKYVGLYLPK 88
           RW FK      L+R+QLPL   +A++I+KSQG +L  V + L +
Sbjct: 528 RWMFKAPGGLYLSRQQLPLKLAWAISIHKSQGMTLDCVEISLAR 571


>sp|Q1HG60|PIF1_RAT ATP-dependent DNA helicase PIF1 OS=Rattus norvegicus GN=Pif1 PE=2
           SV=1
          Length = 637

 Score = 35.0 bits (79), Expect = 0.30,   Method: Composition-based stats.
 Identities = 17/31 (54%), Positives = 23/31 (74%)

Query: 56  LNRRQLPLAPCFAMTINKSQGQSLKYVGLYL 86
           L+R+QLPL   +AM+I+KSQG SL  V + L
Sbjct: 535 LSRQQLPLQLAWAMSIHKSQGMSLDCVEISL 565


>sp|P38766|RRM3_YEAST ATP-dependent helicase RRM3 OS=Saccharomyces cerevisiae (strain
           ATCC 204508 / S288c) GN=RRM3 PE=1 SV=1
          Length = 723

 Score = 33.9 bits (76), Expect = 0.54,   Method: Composition-based stats.
 Identities = 20/54 (37%), Positives = 37/54 (68%), Gaps = 4/54 (7%)

Query: 56  LNRRQLPLAPCFAMTINKSQGQSLKYVGLYLPKQVFT--NVFVKALTNLLTEKT 107
           L R Q+PL  C+A++I+K+QGQ+++ + + L +++F    V+V AL+  +T  T
Sbjct: 644 LERTQIPLMLCWALSIHKAQGQTIQRLKVDL-RRIFEAGQVYV-ALSRAVTMDT 695


>sp|Q9H611|PIF1_HUMAN ATP-dependent DNA helicase PIF1 OS=Homo sapiens GN=PIF1 PE=1 SV=2
          Length = 641

 Score = 33.9 bits (76), Expect = 0.62,   Method: Composition-based stats.
 Identities = 16/31 (51%), Positives = 23/31 (74%)

Query: 56  LNRRQLPLAPCFAMTINKSQGQSLKYVGLYL 86
           L+R+QLPL   +AM+I+KSQG +L  V + L
Sbjct: 539 LSRQQLPLQLAWAMSIHKSQGMTLDCVEISL 569


>sp|Q80SX8|PIF1_MOUSE ATP-dependent DNA helicase PIF1 OS=Mus musculus GN=Pif1 PE=1 SV=2
          Length = 650

 Score = 33.1 bits (74), Expect = 1.1,   Method: Composition-based stats.
 Identities = 16/31 (51%), Positives = 23/31 (74%)

Query: 56  LNRRQLPLAPCFAMTINKSQGQSLKYVGLYL 86
           L+R+QLPL   +A++I+KSQG SL  V + L
Sbjct: 548 LSRQQLPLQLAWAISIHKSQGMSLDCVEISL 578


>sp|P45158|EX5A_HAEIN Exodeoxyribonuclease V alpha chain OS=Haemophilus influenzae
           (strain ATCC 51907 / DSM 11121 / KW20 / Rd) GN=recD PE=3
           SV=1
          Length = 640

 Score = 32.3 bits (72), Expect = 1.8,   Method: Composition-based stats.
 Identities = 13/26 (50%), Positives = 17/26 (65%)

Query: 65  PCFAMTINKSQGQSLKYVGLYLPKQV 90
           P F MTI+KSQG   K+  + LP +V
Sbjct: 564 PAFMMTIHKSQGSEFKHTVMVLPTEV 589


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.323    0.137    0.431 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 61,309,489
Number of Sequences: 539616
Number of extensions: 2198719
Number of successful extensions: 4061
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 4054
Number of HSP's gapped (non-prelim): 8
length of query: 182
length of database: 191,569,459
effective HSP length: 110
effective length of query: 72
effective length of database: 132,211,699
effective search space: 9519242328
effective search space used: 9519242328
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 57 (26.6 bits)