BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 047353
(921 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1GV2|A Chain A, Crystal Structure Of C-Myb R2r3
Length = 105
Score = 75.9 bits (185), Expect = 1e-13, Method: Composition-based stats.
Identities = 38/96 (39%), Positives = 49/96 (51%), Gaps = 43/96 (44%)
Query: 13 QEDEIIIELVNKYGPKKWSTIAQHLPGRIGKQCRE------------------------- 47
+ED+ +I+LV KYGPK+WS IA+HL GRIGKQCRE
Sbjct: 10 EEDQRVIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNPEVKKTSWTEEEDRIIYQ 69
Query: 48 ------------------RTDNAIKNHWNSSVKKKL 65
RTDNAIKNHWNS++++K+
Sbjct: 70 AHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRKV 105
>pdb|1H88|C Chain C, Crystal Structure Of Ternary Protein-Dna Complex1
pdb|1H89|C Chain C, Crystal Structure Of Ternary Protein-Dna Complex2
Length = 159
Score = 75.9 bits (185), Expect = 1e-13, Method: Composition-based stats.
Identities = 38/96 (39%), Positives = 49/96 (51%), Gaps = 43/96 (44%)
Query: 13 QEDEIIIELVNKYGPKKWSTIAQHLPGRIGKQCRE------------------------- 47
+ED+ +I+LV KYGPK+WS IA+HL GRIGKQCRE
Sbjct: 64 EEDQRVIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNPEVKKTSWTEEEDRIIYQ 123
Query: 48 ------------------RTDNAIKNHWNSSVKKKL 65
RTDNAIKNHWNS++++K+
Sbjct: 124 AHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRKV 159
Score = 36.6 bits (83), Expect = 0.066, Method: Composition-based stats.
Identities = 15/36 (41%), Positives = 21/36 (58%)
Query: 13 QEDEIIIELVNKYGPKKWSTIAQHLPGRIGKQCRER 48
+EDE + +LV + G W IA +LP R QC+ R
Sbjct: 12 EEDEKLKKLVEQNGTDDWKVIANYLPNRTDVQCQHR 47
>pdb|1MSE|C Chain C, Solution Structure Of A Specific Dna Complex Of The Myb
Dna- Binding Domain With Cooperative Recognition Helices
pdb|1MSF|C Chain C, Solution Structure Of A Specific Dna Complex Of The Myb
Dna- Binding Domain With Cooperative Recognition Helices
Length = 105
Score = 75.9 bits (185), Expect = 1e-13, Method: Composition-based stats.
Identities = 38/96 (39%), Positives = 49/96 (51%), Gaps = 43/96 (44%)
Query: 13 QEDEIIIELVNKYGPKKWSTIAQHLPGRIGKQCRE------------------------- 47
+ED+ +I+LV KYGPK+WS IA+HL GRIGKQCRE
Sbjct: 10 EEDQRVIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNPEVKKTSWTEEEDRIIYQ 69
Query: 48 ------------------RTDNAIKNHWNSSVKKKL 65
RTDNAIKNHWNS++++K+
Sbjct: 70 AHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRKV 105
>pdb|1A5J|A Chain A, Chicken B-Myb Dna Binding Domain, Repeat 2 And Repeat3,
Nmr, 32 Structures
Length = 110
Score = 75.1 bits (183), Expect = 1e-13, Method: Composition-based stats.
Identities = 37/98 (37%), Positives = 50/98 (51%), Gaps = 43/98 (43%)
Query: 13 QEDEIIIELVNKYGPKKWSTIAQHLPGRIGKQCRE------------------------- 47
+ED+ +IELV KYG K+W+ IA+HL GR+GKQCRE
Sbjct: 13 EEDQKVIELVKKYGTKQWTLIAKHLKGRLGKQCRERWHNHLNPEVKKSSWTEEEDRIIFE 72
Query: 48 ------------------RTDNAIKNHWNSSVKKKLDS 67
RTDNA+KNHWNS++K+K+D+
Sbjct: 73 AHKVLGNRWAEIAKLLPGRTDNAVKNHWNSTIKRKVDT 110
>pdb|1H8A|C Chain C, Crystal Structure Of Ternary Protein-Dna Complex3
Length = 128
Score = 73.6 bits (179), Expect = 5e-13, Method: Composition-based stats.
Identities = 37/96 (38%), Positives = 48/96 (50%), Gaps = 43/96 (44%)
Query: 13 QEDEIIIELVNKYGPKKWSTIAQHLPGRIGKQCRE------------------------- 47
+ED+ +IE V KYGPK+WS IA+HL GRIGKQCRE
Sbjct: 33 EEDQRVIEHVQKYGPKRWSDIAKHLKGRIGKQCRERWHNHLNPEVKKTSWTEEEDRIIYQ 92
Query: 48 ------------------RTDNAIKNHWNSSVKKKL 65
RTDNA+KNHWNS++++K+
Sbjct: 93 AHKRLGNRWAEIAKLLPGRTDNAVKNHWNSTMRRKV 128
>pdb|1MBG|A Chain A, Mouse C-Myb Dna-Binding Domain Repeat 2
pdb|1MBH|A Chain A, Mouse C-Myb Dna-Binding Domain Repeat 2
Length = 53
Score = 68.6 bits (166), Expect = 2e-11, Method: Composition-based stats.
Identities = 28/39 (71%), Positives = 33/39 (84%)
Query: 13 QEDEIIIELVNKYGPKKWSTIAQHLPGRIGKQCRERTDN 51
+ED+ +IELV KYGPK+WS IA+HL GRIGKQCRER N
Sbjct: 9 EEDQRVIELVQKYGPKRWSVIAKHLKGRIGKQCRERWHN 47
>pdb|1GV5|A Chain A, Crystal Structure Of C-Myb R2
Length = 52
Score = 66.6 bits (161), Expect = 5e-11, Method: Composition-based stats.
Identities = 27/39 (69%), Positives = 33/39 (84%)
Query: 13 QEDEIIIELVNKYGPKKWSTIAQHLPGRIGKQCRERTDN 51
+ED+ +I+LV KYGPK+WS IA+HL GRIGKQCRER N
Sbjct: 9 EEDQRVIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHN 47
>pdb|1GVD|A Chain A, Crystal Structure Of C-Myb R2 V103l Mutant
Length = 52
Score = 66.2 bits (160), Expect = 7e-11, Method: Composition-based stats.
Identities = 27/39 (69%), Positives = 33/39 (84%)
Query: 13 QEDEIIIELVNKYGPKKWSTIAQHLPGRIGKQCRERTDN 51
+ED+ +I+LV KYGPK+WS IA+HL GRIGKQCRER N
Sbjct: 9 EEDQRLIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHN 47
>pdb|1MBJ|A Chain A, Mouse C-Myb Dna-Binding Domain Repeat 3
pdb|1MBK|A Chain A, Mouse C-Myb Dna-Binding Domain Repeat 3
Length = 53
Score = 50.4 bits (119), Expect = 4e-06, Method: Composition-based stats.
Identities = 24/53 (45%), Positives = 35/53 (66%), Gaps = 9/53 (16%)
Query: 13 QEDEIIIELVNKYGPKKWSTIAQHLPGRIGKQCRERTDNAIKNHWNSSVKKKL 65
+ED II + + G +W+ IA+ LPGR TDNAIKNHWNS++++K+
Sbjct: 9 EEDRIIYQAHKRLG-NRWAEIAKLLPGR--------TDNAIKNHWNSTMRRKV 52
>pdb|1IDY|A Chain A, Structure Of Myb Transforming Protein, Nmr, Minimized
Average Structure
pdb|1IDZ|A Chain A, Structure Of Myb Transforming Protein, Nmr, 20
Structures
Length = 54
Score = 49.3 bits (116), Expect = 9e-06, Method: Composition-based stats.
Identities = 23/53 (43%), Positives = 35/53 (66%), Gaps = 9/53 (16%)
Query: 13 QEDEIIIELVNKYGPKKWSTIAQHLPGRIGKQCRERTDNAIKNHWNSSVKKKL 65
+ED I+ + + G +W+ IA+ LPGR TDNAIKNHWNS++++K+
Sbjct: 11 EEDRILYQAHKRLG-NRWAEIAKLLPGR--------TDNAIKNHWNSTMRRKV 54
>pdb|3ZQC|A Chain A, Structure Of The Trichomonas Vaginalis Myb3 Dna-Binding
Domain Bound To A Promoter Sequence Reveals A Unique C-
Terminal Beta-Hairpin Conformation
pdb|3ZQC|D Chain D, Structure Of The Trichomonas Vaginalis Myb3 Dna-Binding
Domain Bound To A Promoter Sequence Reveals A Unique C-
Terminal Beta-Hairpin Conformation
pdb|3ZQC|G Chain G, Structure Of The Trichomonas Vaginalis Myb3 Dna-Binding
Domain Bound To A Promoter Sequence Reveals A Unique C-
Terminal Beta-Hairpin Conformation
pdb|3ZQC|J Chain J, Structure Of The Trichomonas Vaginalis Myb3 Dna-Binding
Domain Bound To A Promoter Sequence Reveals A Unique C-
Terminal Beta-Hairpin Conformation
Length = 131
Score = 47.8 bits (112), Expect = 3e-05, Method: Composition-based stats.
Identities = 30/97 (30%), Positives = 38/97 (39%), Gaps = 43/97 (44%)
Query: 14 EDEIIIELVNKYGPKKWSTIAQHLPGRIGKQCRE-------------------------- 47
ED++I E V + GP+ W I LP R KQCRE
Sbjct: 9 EDDLIREYVKENGPQNWPRITSFLPNRSPKQCRERWFNHLDPAVVKHAWTPEEDETIFRN 68
Query: 48 -----------------RTDNAIKNHWNSSVKKKLDS 67
RTDNAIKN WNSS+ K++ +
Sbjct: 69 YLKLGSKWSVIAKLIPGRTDNAIKNRWNSSISKRIST 105
>pdb|2D9A|A Chain A, Solution Structure Of Rsgi Ruh-050, A Myb Dna-Binding
Domain In Mouse Cdna
Length = 60
Score = 38.5 bits (88), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 24/44 (54%)
Query: 5 SANCHICNQEDEIIIELVNKYGPKKWSTIAQHLPGRIGKQCRER 48
S ++EDE + LV ++G + W +A H P R +QC+ R
Sbjct: 6 SGKVKWTHEEDEQLRALVRQFGQQDWKFLASHFPNRTDQQCQYR 49
>pdb|2K9N|A Chain A, Solution Nmr Structure Of The R2r3 Dna Binding Domain Of
Myb1 Protein From Protozoan Parasite Trichomonas
Vaginalis
pdb|2KDZ|A Chain A, Structure Of The R2r3 Dna Binding Domain Of Myb1 Protein
From Protozoan Parasite Trichomonas Vaginalis In
Complex With Mre-1MRE-2r Dna
Length = 107
Score = 38.1 bits (87), Expect = 0.020, Method: Composition-based stats.
Identities = 18/41 (43%), Positives = 26/41 (63%)
Query: 13 QEDEIIIELVNKYGPKKWSTIAQHLPGRIGKQCRERTDNAI 53
+ED + +LV +YG K W I+Q + R +QCRER +N I
Sbjct: 7 EEDLKLQQLVMRYGAKDWIRISQLMITRNPRQCRERWNNYI 47
Score = 30.8 bits (68), Expect = 3.7, Method: Composition-based stats.
Identities = 15/45 (33%), Positives = 26/45 (57%), Gaps = 9/45 (20%)
Query: 13 QEDEIIIELVNKYGPKKWSTIAQHLPGRIGKQCRERTDNAIKNHW 57
+ED ++ + +YGPK W+ I++ L + R+DN I+N W
Sbjct: 59 EEDMLLDQKYAEYGPK-WNKISKFL--------KNRSDNNIRNRW 94
>pdb|2DIM|A Chain A, Solution Structure Of The Myb_dna-Binding Domain Of
Human Cell Division Cycle 5-Like Protein
Length = 70
Score = 38.1 bits (87), Expect = 0.021, Method: Composition-based stats.
Identities = 18/37 (48%), Positives = 22/37 (59%)
Query: 12 NQEDEIIIELVNKYGPKKWSTIAQHLPGRIGKQCRER 48
N EDEI+ V KYG +WS IA L + KQC+ R
Sbjct: 14 NTEDEILKAAVMKYGKNQWSRIASLLHRKSAKQCKAR 50
>pdb|1MBE|A Chain A, Mouse C-Myb Dna-Binding Domain Repeat 1
pdb|1MBF|A Chain A, Mouse C-Myb Dna-Binding Domain Repeat 1
Length = 53
Score = 36.2 bits (82), Expect = 0.097, Method: Composition-based stats.
Identities = 15/36 (41%), Positives = 21/36 (58%)
Query: 13 QEDEIIIELVNKYGPKKWSTIAQHLPGRIGKQCRER 48
+EDE + +LV + G W IA +LP R QC+ R
Sbjct: 9 EEDEKLKKLVEQNGTDDWKVIANYLPNRTDVQCQHR 44
>pdb|1GUU|A Chain A, Crystal Structure Of C-Myb R1
Length = 52
Score = 36.2 bits (82), Expect = 0.097, Method: Composition-based stats.
Identities = 15/36 (41%), Positives = 21/36 (58%)
Query: 13 QEDEIIIELVNKYGPKKWSTIAQHLPGRIGKQCRER 48
+EDE + +LV + G W IA +LP R QC+ R
Sbjct: 9 EEDEKLKKLVEQNGTDDWKVIANYLPNRTDVQCQHR 44
>pdb|3OSF|A Chain A, The Structure Of Protozoan Parasite Trichomonas
Vaginalis Myb2 In Complex With Mre-2f-13 Dna
pdb|3OSF|D Chain D, The Structure Of Protozoan Parasite Trichomonas
Vaginalis Myb2 In Complex With Mre-2f-13 Dna
pdb|3OSG|A Chain A, The Structure Of Protozoan Parasite Trichomonas
Vaginalis Myb2 In Complex With Mre-1-12 Dna
pdb|3OSG|D Chain D, The Structure Of Protozoan Parasite Trichomonas
Vaginalis Myb2 In Complex With Mre-1-12 Dna
Length = 126
Score = 33.9 bits (76), Expect = 0.44, Method: Composition-based stats.
Identities = 15/39 (38%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
Query: 13 QEDEIIIELVNKYGPKKWSTIAQHLPGRIGKQCRERTDN 51
+EDE++ V ++G W IA P R +QCR+R N
Sbjct: 17 EEDEMLKRAVAQHG-SDWKMIAATFPNRNARQCRDRWKN 54
>pdb|3HHS|B Chain B, Crystal Structure Of Manduca Sexta Prophenoloxidase
Length = 684
Score = 30.8 bits (68), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 11/41 (26%), Positives = 23/41 (56%)
Query: 8 CHICNQEDEIIIELVNKYGPKKWSTIAQHLPGRIGKQCRER 48
C + ED+++ E+ + Y P K+ +++ L R G + +R
Sbjct: 18 CFMQKGEDKVVFEIPDHYYPDKYKSLSNTLSNRFGNEATKR 58
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.311 0.128 0.372
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 27,206,972
Number of Sequences: 62578
Number of extensions: 1148360
Number of successful extensions: 2018
Number of sequences better than 100.0: 27
Number of HSP's better than 100.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 1984
Number of HSP's gapped (non-prelim): 43
length of query: 921
length of database: 14,973,337
effective HSP length: 108
effective length of query: 813
effective length of database: 8,214,913
effective search space: 6678724269
effective search space used: 6678724269
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 56 (26.2 bits)