Query 047353
Match_columns 921
No_of_seqs 183 out of 1230
Neff 3.6
Searched_HMMs 46136
Date Fri Mar 29 10:17:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047353.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/047353hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0048 Transcription factor, 99.6 1.3E-16 2.7E-21 165.5 4.6 63 7-69 9-115 (238)
2 PLN03091 hypothetical protein; 99.5 2.3E-13 5E-18 151.5 13.8 66 3-68 10-119 (459)
3 PLN03212 Transcription repress 99.5 1.9E-14 4.2E-19 150.6 4.6 64 4-67 22-129 (249)
4 PF00249 Myb_DNA-binding: Myb- 99.1 4.4E-11 9.6E-16 96.1 1.5 42 7-48 1-43 (48)
5 PF13921 Myb_DNA-bind_6: Myb-l 98.8 4.8E-09 1E-13 87.0 3.6 38 10-48 1-38 (60)
6 smart00717 SANT SANT SWI3, AD 98.7 9.3E-09 2E-13 79.1 3.9 42 7-48 1-42 (49)
7 PLN03212 Transcription repress 98.7 7E-09 1.5E-13 109.5 2.7 51 5-56 76-126 (249)
8 PLN03091 hypothetical protein; 98.6 1.6E-08 3.5E-13 113.5 3.2 51 5-56 65-115 (459)
9 cd00167 SANT 'SWI3, ADA2, N-Co 98.6 4E-08 8.7E-13 74.7 3.1 40 9-48 1-40 (45)
10 KOG0048 Transcription factor, 98.5 4E-08 8.7E-13 102.6 2.9 56 5-61 60-115 (238)
11 KOG0049 Transcription factor, 98.3 2.3E-07 5E-12 107.4 2.3 78 5-82 358-444 (939)
12 KOG0049 Transcription factor, 97.1 0.00018 3.9E-09 84.4 1.7 45 4-48 409-453 (939)
13 COG5147 REB1 Myb superfamily p 97.1 0.00023 5E-09 82.6 2.5 49 1-49 14-62 (512)
14 KOG0051 RNA polymerase I termi 96.9 0.00067 1.5E-08 79.8 3.5 66 2-70 380-452 (607)
15 KOG0050 mRNA splicing protein 96.7 0.00075 1.6E-08 77.9 2.1 48 1-48 1-48 (617)
16 TIGR01557 myb_SHAQKYF myb-like 96.3 0.0037 8E-08 53.5 3.2 44 5-48 1-49 (57)
17 KOG0457 Histone acetyltransfer 96.2 0.0025 5.4E-08 72.5 2.5 43 7-49 72-114 (438)
18 COG5147 REB1 Myb superfamily p 95.0 0.013 2.8E-07 68.6 2.4 44 4-48 69-112 (512)
19 COG5259 RSC8 RSC chromatin rem 94.5 0.021 4.5E-07 65.9 2.5 44 4-48 276-319 (531)
20 KOG1279 Chromatin remodeling f 94.3 0.032 6.9E-07 65.4 3.5 44 4-48 250-293 (506)
21 PF08914 Myb_DNA-bind_2: Rap1 93.8 0.06 1.3E-06 47.4 3.3 54 7-68 2-64 (65)
22 PF13837 Myb_DNA-bind_4: Myb/S 93.5 0.011 2.5E-07 52.1 -1.7 42 7-48 1-59 (90)
23 PF13873 Myb_DNA-bind_5: Myb/S 93.1 0.15 3.3E-06 44.6 4.8 52 6-60 1-68 (78)
24 KOG0050 mRNA splicing protein 91.4 0.057 1.2E-06 63.0 -0.0 48 4-53 56-103 (617)
25 TIGR02894 DNA_bind_RsfA transc 91.0 0.18 3.8E-06 51.6 3.0 55 5-68 2-62 (161)
26 KOG0051 RNA polymerase I termi 89.7 0.25 5.3E-06 59.1 3.2 44 5-48 434-502 (607)
27 PF09111 SLIDE: SLIDE; InterP 87.4 0.39 8.5E-06 46.8 2.4 59 4-62 46-111 (118)
28 PRK13923 putative spore coat p 87.0 0.29 6.2E-06 50.6 1.3 55 5-67 3-62 (170)
29 COG5114 Histone acetyltransfer 80.8 0.8 1.7E-05 51.4 1.5 41 8-48 64-104 (432)
30 PF12776 Myb_DNA-bind_3: Myb/S 78.8 1.9 4E-05 38.7 3.0 53 9-65 1-65 (96)
31 KOG4282 Transcription factor G 73.6 1.7 3.7E-05 48.2 1.5 48 8-55 55-115 (345)
32 PLN03142 Probable chromatin-re 61.9 7.2 0.00016 50.0 3.8 59 6-64 925-987 (1033)
33 PF11626 Rap1_C: TRF2-interact 58.3 10 0.00022 34.8 3.2 26 7-35 47-80 (87)
34 COG5118 BDP1 Transcription ini 45.1 21 0.00045 41.5 3.6 42 6-48 364-405 (507)
35 PRK13250 phycoerythrobilin:fer 42.4 18 0.0004 39.6 2.6 63 464-526 84-176 (248)
36 PRK13247 dihydrobiliverdin:fer 38.8 25 0.00055 38.3 2.9 62 464-526 75-167 (238)
37 KOG2656 DNA methyltransferase 33.4 27 0.00058 40.7 2.2 51 7-66 130-186 (445)
38 PF08281 Sigma70_r4_2: Sigma-7 27.4 66 0.0014 26.1 3.0 38 12-59 12-49 (54)
39 KOG1194 Predicted DNA-binding 25.7 87 0.0019 37.5 4.5 50 4-62 184-233 (534)
40 PF13325 MCRS_N: N-terminal re 21.7 91 0.002 33.5 3.5 57 1-65 67-130 (199)
41 PRK02816 phycocyanobilin:ferre 21.2 57 0.0012 35.8 1.9 62 464-526 92-177 (243)
No 1
>KOG0048 consensus Transcription factor, Myb superfamily [Transcription]
Probab=99.63 E-value=1.3e-16 Score=165.52 Aligned_cols=63 Identities=35% Similarity=0.538 Sum_probs=61.3
Q ss_pred CCCCCHHHHHHHHHHHHHhCCCChHHHhhhCC-CCCccccccC-------------------------------------
Q 047353 7 NCHICNQEDEIIIELVNKYGPKKWSTIAQHLP-GRIGKQCRER------------------------------------- 48 (921)
Q Consensus 7 KG~WTpEEDe~Li~LVekyG~k~Ws~IAk~Lp-GRTgKQCReR------------------------------------- 48 (921)
||+||+|||++|+.+|++||+++|..||+.++ ||+|||||+|
T Consensus 9 kGpWt~EED~~L~~~V~~~G~~~W~~i~k~~gl~R~GKSCRlRW~NyLrP~ikrg~fT~eEe~~Ii~lH~~~GNrWs~IA 88 (238)
T KOG0048|consen 9 KGPWTQEEDLTQIRSIKSFGKHNGTALPKLAGLRRCGKSCRLRWTNYLRPDLKRGNFSDEEEDLIIKLHALLGNRWSLIA 88 (238)
T ss_pred CCCCChHHHHHHHHHHHHhCCCCcchhhhhcCCCccchHHHHHhhcccCCCccCCCCCHHHHHHHHHHHHHHCcHHHHHH
Confidence 69999999999999999999999999999999 9999999999
Q ss_pred ------CchhhhhhCcHHHHhHhhhhh
Q 047353 49 ------TDNAIKNHWNSSVKKKLDSYL 69 (921)
Q Consensus 49 ------TDNaIKNrWns~lKKKL~k~~ 69 (921)
|||+||||||++||||+.++.
T Consensus 89 ~~LPGRTDNeIKN~Wnt~lkkkl~~~~ 115 (238)
T KOG0048|consen 89 GRLPGRTDNEVKNHWNTHLKKKLLKMG 115 (238)
T ss_pred hhCCCcCHHHHHHHHHHHHHHHHHHcC
Confidence 999999999999999998876
No 2
>PLN03091 hypothetical protein; Provisional
Probab=99.48 E-value=2.3e-13 Score=151.46 Aligned_cols=66 Identities=41% Similarity=0.642 Sum_probs=61.6
Q ss_pred ccCcCCCCCHHHHHHHHHHHHHhCCCChHHHhhhCC-CCCccccccC---------------------------------
Q 047353 3 TLSANCHICNQEDEIIIELVNKYGPKKWSTIAQHLP-GRIGKQCRER--------------------------------- 48 (921)
Q Consensus 3 ~~~KKG~WTpEEDe~Li~LVekyG~k~Ws~IAk~Lp-GRTgKQCReR--------------------------------- 48 (921)
+..|||+||+|||++|+++|++||.++|..||++|+ ||++||||+|
T Consensus 10 qklrKg~WTpEEDe~L~~~V~kyG~~nWs~IAk~~g~gRT~KQCRERW~NyLdP~IkKgpWT~EED~lLLeL~k~~GnKW 89 (459)
T PLN03091 10 QKLRKGLWSPEEDEKLLRHITKYGHGCWSSVPKQAGLQRCGKSCRLRWINYLRPDLKRGTFSQQEENLIIELHAVLGNRW 89 (459)
T ss_pred CCCcCCCCCHHHHHHHHHHHHHhCcCCHHHHhhhhccCcCcchHhHHHHhccCCcccCCCCCHHHHHHHHHHHHHhCcch
Confidence 357899999999999999999999999999999985 9999999999
Q ss_pred ----------CchhhhhhCcHHHHhHhhhh
Q 047353 49 ----------TDNAIKNHWNSSVKKKLDSY 68 (921)
Q Consensus 49 ----------TDNaIKNrWns~lKKKL~k~ 68 (921)
|++.|||||+..+||+++..
T Consensus 90 skIAk~LPGRTDnqIKNRWnslLKKklr~~ 119 (459)
T PLN03091 90 SQIAAQLPGRTDNEIKNLWNSCLKKKLRQR 119 (459)
T ss_pred HHHHHhcCCCCHHHHHHHHHHHHHHHHHHc
Confidence 99999999999999998764
No 3
>PLN03212 Transcription repressor MYB5; Provisional
Probab=99.48 E-value=1.9e-14 Score=150.64 Aligned_cols=64 Identities=38% Similarity=0.618 Sum_probs=60.1
Q ss_pred cCcCCCCCHHHHHHHHHHHHHhCCCChHHHhhhC-CCCCccccccC----------------------------------
Q 047353 4 LSANCHICNQEDEIIIELVNKYGPKKWSTIAQHL-PGRIGKQCRER---------------------------------- 48 (921)
Q Consensus 4 ~~KKG~WTpEEDe~Li~LVekyG~k~Ws~IAk~L-pGRTgKQCReR---------------------------------- 48 (921)
-.+|++||+|||++|+++|++||..+|..||++| +||+++|||+|
T Consensus 22 glKRg~WT~EEDe~L~~lV~kyG~~nW~~IAk~~g~gRT~KQCReRW~N~L~P~I~kgpWT~EED~lLlel~~~~GnKWs 101 (249)
T PLN03212 22 GMKRGPWTVEEDEILVSFIKKEGEGRWRSLPKRAGLLRCGKSCRLRWMNYLRPSVKRGGITSDEEDLILRLHRLLGNRWS 101 (249)
T ss_pred CCcCCCCCHHHHHHHHHHHHHhCcccHHHHHHhhhcCCCcchHHHHHHHhhchhcccCCCChHHHHHHHHHHHhccccHH
Confidence 3689999999999999999999998999999999 59999999999
Q ss_pred ---------CchhhhhhCcHHHHhHhhh
Q 047353 49 ---------TDNAIKNHWNSSVKKKLDS 67 (921)
Q Consensus 49 ---------TDNaIKNrWns~lKKKL~k 67 (921)
|+|.|||||+.++|+++..
T Consensus 102 ~IAk~LpGRTDnqIKNRWns~LrK~l~r 129 (249)
T PLN03212 102 LIAGRIPGRTDNEIKNYWNTHLRKKLLR 129 (249)
T ss_pred HHHhhcCCCCHHHHHHHHHHHHhHHHHh
Confidence 9999999999999998765
No 4
>PF00249 Myb_DNA-binding: Myb-like DNA-binding domain; InterPro: IPR014778 The retroviral oncogene v-myb, and its cellular counterpart c-myb, encode nuclear DNA-binding proteins. These belong to the SANT domain family that specifically recognise the sequence YAAC(G/T)G [, ]. In myb, one of the most conserved regions consisting of three tandem repeats has been shown to be involved in DNA-binding [].; PDB: 1X41_A 2XAF_B 2XAG_B 2XAH_B 2UXN_B 2Y48_B 2XAQ_B 2X0L_B 2IW5_B 2XAJ_B ....
Probab=99.06 E-value=4.4e-11 Score=96.07 Aligned_cols=42 Identities=45% Similarity=0.867 Sum_probs=37.4
Q ss_pred CCCCCHHHHHHHHHHHHHhCCCChHHHhhhCC-CCCccccccC
Q 047353 7 NCHICNQEDEIIIELVNKYGPKKWSTIAQHLP-GRIGKQCRER 48 (921)
Q Consensus 7 KG~WTpEEDe~Li~LVekyG~k~Ws~IAk~Lp-GRTgKQCReR 48 (921)
|++||+|||++|+++|.+||.++|..||..|+ |||+.||+.|
T Consensus 1 r~~Wt~eE~~~l~~~v~~~g~~~W~~Ia~~~~~~Rt~~qc~~~ 43 (48)
T PF00249_consen 1 RGPWTEEEDEKLLEAVKKYGKDNWKKIAKRMPGGRTAKQCRSR 43 (48)
T ss_dssp S-SS-HHHHHHHHHHHHHSTTTHHHHHHHHHSSSSTHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHhCCcHHHHHHHHcCCCCCHHHHHHH
Confidence 78999999999999999999966999999999 9988888877
No 5
>PF13921 Myb_DNA-bind_6: Myb-like DNA-binding domain; PDB: 1A5J_A 1MBH_A 1GV5_A 1H89_C 1IDY_A 1MBK_A 1IDZ_A 1H88_C 1GVD_A 1MBG_A ....
Probab=98.77 E-value=4.8e-09 Score=87.05 Aligned_cols=38 Identities=53% Similarity=0.973 Sum_probs=32.5
Q ss_pred CCHHHHHHHHHHHHHhCCCChHHHhhhCCCCCccccccC
Q 047353 10 ICNQEDEIIIELVNKYGPKKWSTIAQHLPGRIGKQCRER 48 (921)
Q Consensus 10 WTpEEDe~Li~LVekyG~k~Ws~IAk~LpGRTgKQCReR 48 (921)
||+|||++|+++|.+||. +|..||++|+.|++.||+.|
T Consensus 1 WT~eEd~~L~~~~~~~g~-~W~~Ia~~l~~Rt~~~~~~r 38 (60)
T PF13921_consen 1 WTKEEDELLLELVKKYGN-DWKKIAEHLGNRTPKQCRNR 38 (60)
T ss_dssp S-HHHHHHHHHHHHHHTS--HHHHHHHSTTS-HHHHHHH
T ss_pred CCHHHHHHHHHHHHHHCc-CHHHHHHHHCcCCHHHHHHH
Confidence 999999999999999997 99999999977988777777
No 6
>smart00717 SANT SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains.
Probab=98.73 E-value=9.3e-09 Score=79.05 Aligned_cols=42 Identities=52% Similarity=0.994 Sum_probs=36.8
Q ss_pred CCCCCHHHHHHHHHHHHHhCCCChHHHhhhCCCCCccccccC
Q 047353 7 NCHICNQEDEIIIELVNKYGPKKWSTIAQHLPGRIGKQCRER 48 (921)
Q Consensus 7 KG~WTpEEDe~Li~LVekyG~k~Ws~IAk~LpGRTgKQCReR 48 (921)
++.||++||++|+.++.+||..+|..||..|++|++.+|+.|
T Consensus 1 ~~~Wt~~E~~~l~~~~~~~g~~~w~~Ia~~~~~rt~~~~~~~ 42 (49)
T smart00717 1 KGEWTEEEDELLIELVKKYGKNNWEKIAKELPGRTAEQCRER 42 (49)
T ss_pred CCCCCHHHHHHHHHHHHHHCcCCHHHHHHHcCCCCHHHHHHH
Confidence 578999999999999999995599999999999966555555
No 7
>PLN03212 Transcription repressor MYB5; Provisional
Probab=98.69 E-value=7e-09 Score=109.51 Aligned_cols=51 Identities=24% Similarity=0.519 Sum_probs=47.7
Q ss_pred CcCCCCCHHHHHHHHHHHHHhCCCChHHHhhhCCCCCccccccCCchhhhhh
Q 047353 5 SANCHICNQEDEIIIELVNKYGPKKWSTIAQHLPGRIGKQCRERTDNAIKNH 56 (921)
Q Consensus 5 ~KKG~WTpEEDe~Li~LVekyG~k~Ws~IAk~LpGRTgKQCReRTDNaIKNr 56 (921)
.+||+||+|||++|+++|.+||+ +|..||++|+|||+.|||+|+...++.+
T Consensus 76 I~kgpWT~EED~lLlel~~~~Gn-KWs~IAk~LpGRTDnqIKNRWns~LrK~ 126 (249)
T PLN03212 76 VKRGGITSDEEDLILRLHRLLGN-RWSLIAGRIPGRTDNEIKNYWNTHLRKK 126 (249)
T ss_pred cccCCCChHHHHHHHHHHHhccc-cHHHHHhhcCCCCHHHHHHHHHHHHhHH
Confidence 57899999999999999999998 8999999999999999999998877764
No 8
>PLN03091 hypothetical protein; Provisional
Probab=98.62 E-value=1.6e-08 Score=113.49 Aligned_cols=51 Identities=31% Similarity=0.566 Sum_probs=47.8
Q ss_pred CcCCCCCHHHHHHHHHHHHHhCCCChHHHhhhCCCCCccccccCCchhhhhh
Q 047353 5 SANCHICNQEDEIIIELVNKYGPKKWSTIAQHLPGRIGKQCRERTDNAIKNH 56 (921)
Q Consensus 5 ~KKG~WTpEEDe~Li~LVekyG~k~Ws~IAk~LpGRTgKQCReRTDNaIKNr 56 (921)
.+||+||+|||++|+++|++||+ +|..||++|+||++.|||.|+...+|.+
T Consensus 65 IkKgpWT~EED~lLLeL~k~~Gn-KWskIAk~LPGRTDnqIKNRWnslLKKk 115 (459)
T PLN03091 65 LKRGTFSQQEENLIIELHAVLGN-RWSQIAAQLPGRTDNEIKNLWNSCLKKK 115 (459)
T ss_pred ccCCCCCHHHHHHHHHHHHHhCc-chHHHHHhcCCCCHHHHHHHHHHHHHHH
Confidence 57899999999999999999998 9999999999999999999988877764
No 9
>cd00167 SANT 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is also found in regulatory transcriptional repressor complexes where it also binds DNA.
Probab=98.57 E-value=4e-08 Score=74.68 Aligned_cols=40 Identities=53% Similarity=0.988 Sum_probs=35.4
Q ss_pred CCCHHHHHHHHHHHHHhCCCChHHHhhhCCCCCccccccC
Q 047353 9 HICNQEDEIIIELVNKYGPKKWSTIAQHLPGRIGKQCRER 48 (921)
Q Consensus 9 ~WTpEEDe~Li~LVekyG~k~Ws~IAk~LpGRTgKQCReR 48 (921)
+||+|||++|+.++.+||..+|..||+.|++|++.||+.|
T Consensus 1 ~Wt~eE~~~l~~~~~~~g~~~w~~Ia~~~~~rs~~~~~~~ 40 (45)
T cd00167 1 PWTEEEDELLLEAVKKYGKNNWEKIAKELPGRTPKQCRER 40 (45)
T ss_pred CCCHHHHHHHHHHHHHHCcCCHHHHHhHcCCCCHHHHHHH
Confidence 5999999999999999996699999999999966666555
No 10
>KOG0048 consensus Transcription factor, Myb superfamily [Transcription]
Probab=98.53 E-value=4e-08 Score=102.64 Aligned_cols=56 Identities=25% Similarity=0.470 Sum_probs=51.5
Q ss_pred CcCCCCCHHHHHHHHHHHHHhCCCChHHHhhhCCCCCccccccCCchhhhhhCcHHH
Q 047353 5 SANCHICNQEDEIIIELVNKYGPKKWSTIAQHLPGRIGKQCRERTDNAIKNHWNSSV 61 (921)
Q Consensus 5 ~KKG~WTpEEDe~Li~LVekyG~k~Ws~IAk~LpGRTgKQCReRTDNaIKNrWns~l 61 (921)
.|||.||+|||++|+++++++|+ +|+.||++|||||+...+..|.-.||.++....
T Consensus 60 ikrg~fT~eEe~~Ii~lH~~~GN-rWs~IA~~LPGRTDNeIKN~Wnt~lkkkl~~~~ 115 (238)
T KOG0048|consen 60 LKRGNFSDEEEDLIIKLHALLGN-RWSLIAGRLPGRTDNEVKNHWNTHLKKKLLKMG 115 (238)
T ss_pred ccCCCCCHHHHHHHHHHHHHHCc-HHHHHHhhCCCcCHHHHHHHHHHHHHHHHHHcC
Confidence 58999999999999999999999 899999999999999999999888888876543
No 11
>KOG0049 consensus Transcription factor, Myb superfamily [Transcription]
Probab=98.31 E-value=2.3e-07 Score=107.40 Aligned_cols=78 Identities=28% Similarity=0.517 Sum_probs=64.6
Q ss_pred CcCCCCCHHHHHHHHHHHHHhCCCChHHHhhhCCCCCccccccCCchhh-----hhhCcHHHHhHh----hhhhcccccc
Q 047353 5 SANCHICNQEDEIIIELVNKYGPKKWSTIAQHLPGRIGKQCRERTDNAI-----KNHWNSSVKKKL----DSYLASGLLE 75 (921)
Q Consensus 5 ~KKG~WTpEEDe~Li~LVekyG~k~Ws~IAk~LpGRTgKQCReRTDNaI-----KNrWns~lKKKL----~k~~as~~~~ 75 (921)
.++|+||++||.+|+.+|++||.+.|.+|-+.+|||+..|||+|+.|-+ +.+|+-....+| .+|.+.++.+
T Consensus 358 ikhg~wt~~ED~~L~~AV~~Yg~kdw~k~R~~vPnRSdsQcR~RY~nvL~~s~K~~rW~l~edeqL~~~V~~YG~g~Wak 437 (939)
T KOG0049|consen 358 VKHGRWTDQEDVLLVCAVSRYGAKDWAKVRQAVPNRSDSQCRERYTNVLNRSAKVERWTLVEDEQLLYAVKVYGKGNWAK 437 (939)
T ss_pred ccCCCCCCHHHHHHHHHHHHhCccchhhHHHhcCCccHHHHHHHHHHHHHHhhccCceeecchHHHHHHHHHHccchHHH
Confidence 5789999999999999999999999999999999999999999976666 677986555554 4566677766
Q ss_pred cccCCCC
Q 047353 76 QFQGLPL 82 (921)
Q Consensus 76 q~~~lp~ 82 (921)
....||.
T Consensus 438 cA~~Lp~ 444 (939)
T KOG0049|consen 438 CAMLLPK 444 (939)
T ss_pred HHHHccc
Confidence 6555554
No 12
>KOG0049 consensus Transcription factor, Myb superfamily [Transcription]
Probab=97.13 E-value=0.00018 Score=84.37 Aligned_cols=45 Identities=29% Similarity=0.412 Sum_probs=40.4
Q ss_pred cCcCCCCCHHHHHHHHHHHHHhCCCChHHHhhhCCCCCccccccC
Q 047353 4 LSANCHICNQEDEIIIELVNKYGPKKWSTIAQHLPGRIGKQCRER 48 (921)
Q Consensus 4 ~~KKG~WTpEEDe~Li~LVekyG~k~Ws~IAk~LpGRTgKQCReR 48 (921)
..|+|.|+-.||+.|+.+|++||.++|.+||.+||.||++|-+.|
T Consensus 409 s~K~~rW~l~edeqL~~~V~~YG~g~WakcA~~Lp~~t~~q~~rr 453 (939)
T KOG0049|consen 409 SAKVERWTLVEDEQLLYAVKVYGKGNWAKCAMLLPKKTSRQLRRR 453 (939)
T ss_pred hhccCceeecchHHHHHHHHHHccchHHHHHHHccccchhHHHHH
Confidence 358899999999999999999999999999999999999764433
No 13
>COG5147 REB1 Myb superfamily proteins, including transcription factors and mRNA splicing factors [Transcription / RNA processing and modification / Cell division and chromosome partitioning]
Probab=97.12 E-value=0.00023 Score=82.58 Aligned_cols=49 Identities=37% Similarity=0.465 Sum_probs=45.0
Q ss_pred CcccCcCCCCCHHHHHHHHHHHHHhCCCChHHHhhhCCCCCccccccCC
Q 047353 1 MLTLSANCHICNQEDEIIIELVNKYGPKKWSTIAQHLPGRIGKQCRERT 49 (921)
Q Consensus 1 ml~~~KKG~WTpEEDe~Li~LVekyG~k~Ws~IAk~LpGRTgKQCReRT 49 (921)
|...++.|.|+..||+.|..+|+.||+.+|++||..+.-|+++||+.|+
T Consensus 14 ~~~~~k~gsw~~~EDe~l~~~vk~l~~nnws~vas~~~~~~~kq~~~rw 62 (512)
T COG5147 14 MQTKRKGGSWKRTEDEDLKALVKKLGPNNWSKVASLLISSTGKQSSNRW 62 (512)
T ss_pred ccceecCCCCCCcchhHHHHHHhhcccccHHHHHHHhcccccccccchh
Confidence 3456788999999999999999999999999999999999999999994
No 14
>KOG0051 consensus RNA polymerase I termination factor, Myb superfamily [Transcription]
Probab=96.88 E-value=0.00067 Score=79.81 Aligned_cols=66 Identities=24% Similarity=0.440 Sum_probs=54.9
Q ss_pred cccCcCCCCCHHHHHHHHHHHHHhCCCChHHHhhhCCCCCccccccCCc-------hhhhhhCcHHHHhHhhhhhc
Q 047353 2 LTLSANCHICNQEDEIIIELVNKYGPKKWSTIAQHLPGRIGKQCRERTD-------NAIKNHWNSSVKKKLDSYLA 70 (921)
Q Consensus 2 l~~~KKG~WTpEEDe~Li~LVekyG~k~Ws~IAk~LpGRTgKQCReRTD-------NaIKNrWns~lKKKL~k~~a 70 (921)
++. +||.||+||++.|..+|.++|. .|..|+..| ||.+..||+|+- +.=+++|......+|.+...
T Consensus 380 FE~-~rg~wt~ee~eeL~~l~~~~g~-~W~~Ig~~l-gr~P~~crd~wr~~~~~g~~~~r~~Ws~eEe~~Llk~V~ 452 (607)
T KOG0051|consen 380 FEN-KRGKWTPEEEEELKKLVVEHGN-DWKEIGKAL-GRMPMDCRDRWRQYVKCGSKRNRGAWSIEEEEKLLKTVN 452 (607)
T ss_pred ccc-ccCCCCcchHHHHHHHHHHhcc-cHHHHHHHH-ccCcHHHHHHHHHhhccccccccCcchHHHHHHHHHHHH
Confidence 444 8999999999999999999998 999999655 688999999932 23467899998888877654
No 15
>KOG0050 consensus mRNA splicing protein CDC5 (Myb superfamily) [RNA processing and modification; Cell cycle control, cell division, chromosome partitioning]
Probab=96.70 E-value=0.00075 Score=77.87 Aligned_cols=48 Identities=35% Similarity=0.540 Sum_probs=44.5
Q ss_pred CcccCcCCCCCHHHHHHHHHHHHHhCCCChHHHhhhCCCCCccccccC
Q 047353 1 MLTLSANCHICNQEDEIIIELVNKYGPKKWSTIAQHLPGRIGKQCRER 48 (921)
Q Consensus 1 ml~~~KKG~WTpEEDe~Li~LVekyG~k~Ws~IAk~LpGRTgKQCReR 48 (921)
|.-.++-|.|+.-||+.|...|.+||.+.|++|++.++..+.+||+.|
T Consensus 1 ~~i~~kggvwrntEdeilkaav~kyg~nqws~i~sll~~kt~rqC~~r 48 (617)
T KOG0050|consen 1 MRIEIKGGVWRNTEDEVLKAAVMKYGKNQWSRIASLLNRKTARQCKAR 48 (617)
T ss_pred CceEEecceecccHHHHHHHHHHHcchHHHHHHHHHHhhcchhHHHHH
Confidence 344678899999999999999999999999999999999999999988
No 16
>TIGR01557 myb_SHAQKYF myb-like DNA-binding domain, SHAQKYF class. This model describes a DNA-binding domain restricted to (but common in) plant proteins, many of which also contain a response regulator domain. The domain appears related to the Myb-like DNA-binding domain described by Pfam model pfam00249. It is distinguished in part by a well-conserved motif SH[AL]QKY[RF] at the C-terminal end of the motif.
Probab=96.27 E-value=0.0037 Score=53.53 Aligned_cols=44 Identities=14% Similarity=0.238 Sum_probs=36.7
Q ss_pred CcCCCCCHHHHHHHHHHHHHhCCCCh---HHHhhhCC-CC-CccccccC
Q 047353 5 SANCHICNQEDEIIIELVNKYGPKKW---STIAQHLP-GR-IGKQCRER 48 (921)
Q Consensus 5 ~KKG~WTpEEDe~Li~LVekyG~k~W---s~IAk~Lp-GR-TgKQCReR 48 (921)
++|-.||+||..+.+..++.||.++| ..|++.|. .| |..||+.+
T Consensus 1 k~r~~WT~eeh~~Fl~ai~~~G~g~~a~pk~I~~~~~~~~lT~~qV~SH 49 (57)
T TIGR01557 1 KPRVVWTEDLHDRFLQAVQKLGGPDWATPKRILELMVVDGLTRDQVASH 49 (57)
T ss_pred CCCCCCCHHHHHHHHHHHHHhCCCcccchHHHHHHcCCCCCCHHHHHHH
Confidence 35778999999999999999998899 99999986 34 66666544
No 17
>KOG0457 consensus Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics]
Probab=96.22 E-value=0.0025 Score=72.52 Aligned_cols=43 Identities=23% Similarity=0.553 Sum_probs=39.4
Q ss_pred CCCCCHHHHHHHHHHHHHhCCCChHHHhhhCCCCCccccccCC
Q 047353 7 NCHICNQEDEIIIELVNKYGPKKWSTIAQHLPGRIGKQCRERT 49 (921)
Q Consensus 7 KG~WTpEEDe~Li~LVekyG~k~Ws~IAk~LpGRTgKQCReRT 49 (921)
...||.+|+-+|+++++.||-++|..||.++..|++.+|++..
T Consensus 72 ~~~WtadEEilLLea~~t~G~GNW~dIA~hIGtKtkeeck~hy 114 (438)
T KOG0457|consen 72 DPSWTADEEILLLEAAETYGFGNWQDIADHIGTKTKEECKEHY 114 (438)
T ss_pred CCCCChHHHHHHHHHHHHhCCCcHHHHHHHHcccchHHHHHHH
Confidence 4789999999999999999999999999999999887777764
No 18
>COG5147 REB1 Myb superfamily proteins, including transcription factors and mRNA splicing factors [Transcription / RNA processing and modification / Cell division and chromosome partitioning]
Probab=95.01 E-value=0.013 Score=68.60 Aligned_cols=44 Identities=36% Similarity=0.558 Sum_probs=39.9
Q ss_pred cCcCCCCCHHHHHHHHHHHHHhCCCChHHHhhhCCCCCccccccC
Q 047353 4 LSANCHICNQEDEIIIELVNKYGPKKWSTIAQHLPGRIGKQCRER 48 (921)
Q Consensus 4 ~~KKG~WTpEEDe~Li~LVekyG~k~Ws~IAk~LpGRTgKQCReR 48 (921)
..+++.|+.|||+.|+.+..++|+ .|..||..++||++-||-+|
T Consensus 69 ~lk~~~~~~eed~~li~l~~~~~~-~wstia~~~d~rt~~~~~er 112 (512)
T COG5147 69 QLKKKNWSEEEDEQLIDLDKELGT-QWSTIADYKDRRTAQQCVER 112 (512)
T ss_pred hcccccccHHHHHHHHHHHHhcCc-hhhhhccccCccchHHHHHH
Confidence 568899999999999999999999 79999999999977666666
No 19
>COG5259 RSC8 RSC chromatin remodeling complex subunit RSC8 [Chromatin structure and dynamics / Transcription]
Probab=94.54 E-value=0.021 Score=65.88 Aligned_cols=44 Identities=25% Similarity=0.481 Sum_probs=41.2
Q ss_pred cCcCCCCCHHHHHHHHHHHHHhCCCChHHHhhhCCCCCccccccC
Q 047353 4 LSANCHICNQEDEIIIELVNKYGPKKWSTIAQHLPGRIGKQCRER 48 (921)
Q Consensus 4 ~~KKG~WTpEEDe~Li~LVekyG~k~Ws~IAk~LpGRTgKQCReR 48 (921)
+.+...||.+|-.+|++.++.||. .|.+||.+++.|+.-||-.|
T Consensus 276 ~~~dk~WS~qE~~LLLEGIe~ygD-dW~kVA~HVgtKt~EqCIl~ 319 (531)
T COG5259 276 LIRDKNWSRQELLLLLEGIEMYGD-DWDKVARHVGTKTKEQCILH 319 (531)
T ss_pred ccccccccHHHHHHHHHHHHHhhh-hHHHHHHHhCCCCHHHHHHH
Confidence 346779999999999999999998 99999999999999999988
No 20
>KOG1279 consensus Chromatin remodeling factor subunit and related transcription factors [Chromatin structure and dynamics]
Probab=94.34 E-value=0.032 Score=65.38 Aligned_cols=44 Identities=27% Similarity=0.527 Sum_probs=41.0
Q ss_pred cCcCCCCCHHHHHHHHHHHHHhCCCChHHHhhhCCCCCccccccC
Q 047353 4 LSANCHICNQEDEIIIELVNKYGPKKWSTIAQHLPGRIGKQCRER 48 (921)
Q Consensus 4 ~~KKG~WTpEEDe~Li~LVekyG~k~Ws~IAk~LpGRTgKQCReR 48 (921)
-.-++.||.+|+-+|+..|++||. .|.+||.+...|+..||-.+
T Consensus 250 ~~~~~~WT~qE~lLLLE~ie~y~d-dW~kVa~hVg~ks~eqCI~k 293 (506)
T KOG1279|consen 250 ESARPNWTEQETLLLLEAIEMYGD-DWNKVADHVGTKSQEQCILK 293 (506)
T ss_pred ccCCCCccHHHHHHHHHHHHHhcc-cHHHHHhccCCCCHHHHHHH
Confidence 345789999999999999999999 99999999999999999887
No 21
>PF08914 Myb_DNA-bind_2: Rap1 Myb domain; InterPro: IPR015010 Rap1 Myb adopts a canonical three-helix bundle tertiary structure, with the second and third helices forming a helix-turn-helix variant motif. The function is unclear but it may either interact with DNA via an adaptor protein or it may be only involved in protein-protein interactions []. ; PDB: 1FEX_A.
Probab=93.78 E-value=0.06 Score=47.40 Aligned_cols=54 Identities=13% Similarity=0.371 Sum_probs=30.3
Q ss_pred CCCCCHHHHHHHHHHHHHhCC--------CChHHHhhhCC-CCCccccccCCchhhhhhCcHHHHhHhhhh
Q 047353 7 NCHICNQEDEIIIELVNKYGP--------KKWSTIAQHLP-GRIGKQCRERTDNAIKNHWNSSVKKKLDSY 68 (921)
Q Consensus 7 KG~WTpEEDe~Li~LVekyG~--------k~Ws~IAk~Lp-GRTgKQCReRTDNaIKNrWns~lKKKL~k~ 68 (921)
|-+||.|||++|+..|..+.. +=|..+++.-+ ++ |--+.++||..+|+.+...+
T Consensus 2 R~~fT~edD~~l~~~v~~~~~~~~~~~Gn~iwk~le~~~~t~H--------twQSwR~Ry~K~L~~~~~~~ 64 (65)
T PF08914_consen 2 RTPFTEEDDAALLDYVKENERQGGSVSGNKIWKELEEKHPTRH--------TWQSWRDRYLKHLRGRPRKY 64 (65)
T ss_dssp -----HHHHHHHHHHHHHT--STTTTTSSHHHHHHHHS-SSS----------SHHHHHHHHHHT-------
T ss_pred CCCCCHHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHcCCCC--------CHHHHHHHHHHHHhccccCC
Confidence 568999999999999976532 22999998887 55 76777787877777665543
No 22
>PF13837 Myb_DNA-bind_4: Myb/SANT-like DNA-binding domain; PDB: 2EBI_A 2JMW_A.
Probab=93.46 E-value=0.011 Score=52.13 Aligned_cols=42 Identities=31% Similarity=0.651 Sum_probs=28.6
Q ss_pred CCCCCHHHHHHHHHHHHH------hC---CC----ChHHHhhhCC----CCCccccccC
Q 047353 7 NCHICNQEDEIIIELVNK------YG---PK----KWSTIAQHLP----GRIGKQCRER 48 (921)
Q Consensus 7 KG~WTpEEDe~Li~LVek------yG---~k----~Ws~IAk~Lp----GRTgKQCReR 48 (921)
|..||.+|...|+.+... ++ .. -|..||..|. .|++.||+.|
T Consensus 1 R~~Wt~~et~~Li~~~~~~~~~~~~~~~~~~~~~~~w~~Ia~~l~~~G~~rt~~qc~~K 59 (90)
T PF13837_consen 1 RRNWTDEETKLLIELWKENLMELRFDNGGKKRNKKVWKEIAEELAEHGYNRTPEQCRNK 59 (90)
T ss_dssp --SS-HHHHHHHHHHHHH--HHHHHHH--SS--HHHHHHHHHHHHHHC----HHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 468999999999999887 22 11 3999999985 6777777766
No 23
>PF13873 Myb_DNA-bind_5: Myb/SANT-like DNA-binding domain
Probab=93.15 E-value=0.15 Score=44.58 Aligned_cols=52 Identities=29% Similarity=0.483 Sum_probs=41.1
Q ss_pred cCCCCCHHHHHHHHHHHHHh-----CC-----------CChHHHhhhCCCCCccccccCCchhhhhhCcHH
Q 047353 6 ANCHICNQEDEIIIELVNKY-----GP-----------KKWSTIAQHLPGRIGKQCRERTDNAIKNHWNSS 60 (921)
Q Consensus 6 KKG~WTpEEDe~Li~LVeky-----G~-----------k~Ws~IAk~LpGRTgKQCReRTDNaIKNrWns~ 60 (921)
|+..||++|.+.|+.+|++| |. .-|..|+..|....+ + .|+...+|..|...
T Consensus 1 R~~~fs~~E~~~Lv~~v~~~~~il~~k~~~~~~~~~k~~~W~~I~~~lN~~~~--~-~Rs~~~lkkkW~nl 68 (78)
T PF13873_consen 1 RKPNFSEEEKEILVELVEKHKDILENKFSDSVSNKEKRKAWEEIAEELNALGP--G-KRSWKQLKKKWKNL 68 (78)
T ss_pred CCCCCCHHHHHHHHHHHHHhHHHHhcccccHHHHHHHHHHHHHHHHHHHhcCC--C-CCCHHHHHHHHHHH
Confidence 57899999999999999987 41 129999999875444 2 56888888888873
No 24
>KOG0050 consensus mRNA splicing protein CDC5 (Myb superfamily) [RNA processing and modification; Cell cycle control, cell division, chromosome partitioning]
Probab=91.37 E-value=0.057 Score=63.03 Aligned_cols=48 Identities=31% Similarity=0.525 Sum_probs=40.8
Q ss_pred cCcCCCCCHHHHHHHHHHHHHhCCCChHHHhhhCCCCCccccccCCchhh
Q 047353 4 LSANCHICNQEDEIIIELVNKYGPKKWSTIAQHLPGRIGKQCRERTDNAI 53 (921)
Q Consensus 4 ~~KKG~WTpEEDe~Li~LVekyG~k~Ws~IAk~LpGRTgKQCReRTDNaI 53 (921)
..++.-|+.|||++|+.+....-+ .|..|| .+-||++.||-+|+.+.+
T Consensus 56 ~i~~tews~eederlLhlakl~p~-qwrtIa-~i~gr~~~qc~eRy~~ll 103 (617)
T KOG0050|consen 56 AIKKTEWSREEDERLLHLAKLEPT-QWRTIA-DIMGRTSQQCLERYNNLL 103 (617)
T ss_pred HHhhhhhhhhHHHHHHHHHHhcCC-ccchHH-HHhhhhHHHHHHHHHHHH
Confidence 357889999999999999999888 999999 456899999999954443
No 25
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=91.00 E-value=0.18 Score=51.64 Aligned_cols=55 Identities=22% Similarity=0.382 Sum_probs=40.2
Q ss_pred CcCCCCCHHHHHHHHHHHHHhCCCC------hHHHhhhCCCCCccccccCCchhhhhhCcHHHHhHhhhh
Q 047353 5 SANCHICNQEDEIIIELVNKYGPKK------WSTIAQHLPGRIGKQCRERTDNAIKNHWNSSVKKKLDSY 68 (921)
Q Consensus 5 ~KKG~WTpEEDe~Li~LVekyG~k~------Ws~IAk~LpGRTgKQCReRTDNaIKNrWns~lKKKL~k~ 68 (921)
.|...||.|||.+|-..|-.|=... ...++..| +||.-.|.-| ||+.+||++..-
T Consensus 2 ~RQDAWT~eeDlLLAEtVLrhIReG~TQL~AFeEvg~~L-~RTsAACGFR--------WNs~VRkqY~~~ 62 (161)
T TIGR02894 2 TRQDAWTHEEDLLLAETVLRHIREGSTQLSAFEEVGRAL-NRTAAACGFR--------WNAYVRKQYEEA 62 (161)
T ss_pred ccccccccHHHHHHHHHHHHHHhcchHHHHHHHHHHHHH-cccHHHhcch--------HHHHHHHHHHHH
Confidence 4778999999999999999884322 33333333 7977777777 888888877554
No 26
>KOG0051 consensus RNA polymerase I termination factor, Myb superfamily [Transcription]
Probab=89.75 E-value=0.25 Score=59.11 Aligned_cols=44 Identities=25% Similarity=0.446 Sum_probs=37.9
Q ss_pred CcCCCCCHHHHHHHHHHHH-------Hh-----------CC-------CChHHHhhhCCCCCccccccC
Q 047353 5 SANCHICNQEDEIIIELVN-------KY-----------GP-------KKWSTIAQHLPGRIGKQCRER 48 (921)
Q Consensus 5 ~KKG~WTpEEDe~Li~LVe-------ky-----------G~-------k~Ws~IAk~LpGRTgKQCReR 48 (921)
.++|+||.||.++|+++|+ +| -+ -+|..|++.+..|+.-|||..
T Consensus 434 ~~r~~Ws~eEe~~Llk~V~~~~~~~~q~q~~n~~~~~q~sp~s~~~d~I~Wt~vse~~~TR~~~qCr~K 502 (607)
T KOG0051|consen 434 RNRGAWSIEEEEKLLKTVNEMIREALQPQASNTDTGLQESPESTLKDDINWTLVSEMLGTRSRIQCRYK 502 (607)
T ss_pred cccCcchHHHHHHHHHHHHHHHHHhhcccccccchhhhcCccccccCCcchhhhhHhhcCCCcchHHHH
Confidence 5899999999999999996 34 11 159999999999999999998
No 27
>PF09111 SLIDE: SLIDE; InterPro: IPR015195 The SLIDE domain adopts a secondary structure comprising a main core of three alpha-helices. It has a role in DNA binding, contacting DNA target sites similar to c-Myb (IPR014778 from INTERPRO) repeats or homeodomains []. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides, 0006338 chromatin remodeling, 0005634 nucleus; PDB: 2NOG_A 2Y9Y_A 2Y9Z_A 1OFC_X.
Probab=87.39 E-value=0.39 Score=46.77 Aligned_cols=59 Identities=22% Similarity=0.373 Sum_probs=42.0
Q ss_pred cCcCCCCCHHHHHHHHHHHHHhCC---CChHHHhhhCC----CCCccccccCCchhhhhhCcHHHH
Q 047353 4 LSANCHICNQEDEIIIELVNKYGP---KKWSTIAQHLP----GRIGKQCRERTDNAIKNHWNSSVK 62 (921)
Q Consensus 4 ~~KKG~WTpEEDe~Li~LVekyG~---k~Ws~IAk~Lp----GRTgKQCReRTDNaIKNrWns~lK 62 (921)
..++..||.|||..|+-++.+||- +.|..|-..+. -|=+-=++.||...|..|-+.+|+
T Consensus 46 ~~~~k~yseeEDRfLl~~~~~~G~~~~~~~e~Ik~~Ir~~p~FrFDwf~kSRt~~el~rR~~tLi~ 111 (118)
T PF09111_consen 46 NNKKKVYSEEEDRFLLCMLYKYGYDAEGNWEKIKQEIRESPLFRFDWFFKSRTPQELQRRCNTLIK 111 (118)
T ss_dssp TSS-SSS-HHHHHHHHHHHHHHTTTSTTHHHHHHHHHHH-CGGCT-HHHHTS-HHHHHHHHHHHHH
T ss_pred CCCCCCcCcHHHHHHHHHHHHhCCCCCchHHHHHHHHHhCCCcccchhcccCCHHHHHHHHHHHHH
Confidence 356789999999999999999999 89999977653 343334555577777777666654
No 28
>PRK13923 putative spore coat protein regulator protein YlbO; Provisional
Probab=87.04 E-value=0.29 Score=50.58 Aligned_cols=55 Identities=20% Similarity=0.300 Sum_probs=40.7
Q ss_pred CcCCCCCHHHHHHHHHHHHHhCCCChHHHhhh-----CCCCCccccccCCchhhhhhCcHHHHhHhhh
Q 047353 5 SANCHICNQEDEIIIELVNKYGPKKWSTIAQH-----LPGRIGKQCRERTDNAIKNHWNSSVKKKLDS 67 (921)
Q Consensus 5 ~KKG~WTpEEDe~Li~LVekyG~k~Ws~IAk~-----LpGRTgKQCReRTDNaIKNrWns~lKKKL~k 67 (921)
.|...||.|||.+|-..|-.|+...=..++.+ .-+|+.-+|..| ||+.++++...
T Consensus 3 ~rqdawt~e~d~llae~vl~~i~eg~tql~afe~~g~~L~rt~aac~fR--------wNs~vrk~Yee 62 (170)
T PRK13923 3 TRQDAWTQERDGLLAEVVLRHIREGGTQLKAFEEVGDALKRTAAACGFR--------WNSVVRKQYQE 62 (170)
T ss_pred chhhhhhhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHhhhHHHHHhH--------HHHHHHHHHHH
Confidence 57889999999999999999876443444333 237878788887 77777776544
No 29
>COG5114 Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics]
Probab=80.82 E-value=0.8 Score=51.40 Aligned_cols=41 Identities=20% Similarity=0.366 Sum_probs=35.4
Q ss_pred CCCCHHHHHHHHHHHHHhCCCChHHHhhhCCCCCccccccC
Q 047353 8 CHICNQEDEIIIELVNKYGPKKWSTIAQHLPGRIGKQCRER 48 (921)
Q Consensus 8 G~WTpEEDe~Li~LVekyG~k~Ws~IAk~LpGRTgKQCReR 48 (921)
--|...|+-+|++.....|-++|..||.+++.|+...||++
T Consensus 64 e~WgadEEllli~~~~TlGlGNW~dIadyiGsr~kee~k~H 104 (432)
T COG5114 64 EGWGADEELLLIECLDTLGLGNWEDIADYIGSRAKEEIKSH 104 (432)
T ss_pred CCcCchHHHHHHHHHHhcCCCcHHHHHHHHhhhhhHHHHHH
Confidence 46999999999999999999999999999999955444443
No 30
>PF12776 Myb_DNA-bind_3: Myb/SANT-like DNA-binding domain; InterPro: IPR024752 This domain, found in a range of uncharacterised proteins, may be related to Myb/SANT-like DNA binding domains.
Probab=78.76 E-value=1.9 Score=38.73 Aligned_cols=53 Identities=23% Similarity=0.543 Sum_probs=38.7
Q ss_pred CCCHHHHHHHHHHHHHh---CCC---------ChHHHhhhCCCCCccccccCCchhhhhhCcHHHHhHh
Q 047353 9 HICNQEDEIIIELVNKY---GPK---------KWSTIAQHLPGRIGKQCRERTDNAIKNHWNSSVKKKL 65 (921)
Q Consensus 9 ~WTpEEDe~Li~LVeky---G~k---------~Ws~IAk~LpGRTgKQCReRTDNaIKNrWns~lKKKL 65 (921)
.||+++++.|+.+.... |.. .|..|+..|..+++... +...|||+|+. +|++.
T Consensus 1 ~Wt~~~~~~ll~~~~e~~~~g~~~~~~~fk~~~w~~i~~~~~~~~~~~~---t~~qlknk~~~-lk~~y 65 (96)
T PF12776_consen 1 SWTPEMTRFLLDLLIEQINKGNRPTNGGFKKEGWNNIAEEFNEKTGLNY---TKKQLKNKWKT-LKKDY 65 (96)
T ss_pred CCChHHHHHHHHHHHHHHHhCCCCCCCCcCHHHHHHHHHHHHHHhCCcc---cHHHHHHHHHH-HHHHH
Confidence 59999999999998654 433 29999999876555332 56788888887 45444
No 31
>KOG4282 consensus Transcription factor GT-2 and related proteins, contains trihelix DNA-binding/SANT domain [Transcription]
Probab=73.60 E-value=1.7 Score=48.17 Aligned_cols=48 Identities=23% Similarity=0.421 Sum_probs=36.6
Q ss_pred CCCCHHHHHHHHHHHHH----hCCC-----ChHHHhhhCC----CCCccccccCCchhhhh
Q 047353 8 CHICNQEDEIIIELVNK----YGPK-----KWSTIAQHLP----GRIGKQCRERTDNAIKN 55 (921)
Q Consensus 8 G~WTpEEDe~Li~LVek----yG~k-----~Ws~IAk~Lp----GRTgKQCReRTDNaIKN 55 (921)
..|+.+|-..|+.+... ++.. .|..||+.|. -|+++|||.|.+|..|.
T Consensus 55 ~~Ws~~et~~Li~~~~~~~~~~~~~~~k~~~We~va~k~~~~g~~rs~~qck~K~~nl~k~ 115 (345)
T KOG4282|consen 55 PRWSEEETLTLIEIRGEMDVALRRGKLKGPLWEEVARKMAELGYPRSPKQCKAKIENLKKK 115 (345)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHhhhhcccHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHH
Confidence 78999999999988763 2222 4999999764 79888998886655554
No 32
>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional
Probab=61.89 E-value=7.2 Score=50.02 Aligned_cols=59 Identities=14% Similarity=0.238 Sum_probs=45.9
Q ss_pred cCCCCCHHHHHHHHHHHHHhCCCChHHHhhhCC----CCCccccccCCchhhhhhCcHHHHhH
Q 047353 6 ANCHICNQEDEIIIELVNKYGPKKWSTIAQHLP----GRIGKQCRERTDNAIKNHWNSSVKKK 64 (921)
Q Consensus 6 KKG~WTpEEDe~Li~LVekyG~k~Ws~IAk~Lp----GRTgKQCReRTDNaIKNrWns~lKKK 64 (921)
++..||.|||..|+-++.+||.++|.+|-..+. -|=+-=++.||...|+.|.+.+++--
T Consensus 925 ~~~~~~~~~d~~~~~~~~~~g~~~~~~~~~~i~~~~~f~fd~~~~srt~~~~~~r~~~l~~~~ 987 (1033)
T PLN03142 925 KGKLYNEECDRFMLCMVHKLGYGNWDELKAAFRTSPLFRFDWFVKSRTPQELARRCDTLIRLI 987 (1033)
T ss_pred CCCcCCHHHHHHHHHHHHHhccchHHHHHHHHHhCCceeeehhhccCCHHHHHHHHHHHHHHH
Confidence 456799999999999999999999999966542 34444455668888988888876543
No 33
>PF11626 Rap1_C: TRF2-interacting telomeric protein/Rap1 - C terminal domain; InterPro: IPR021661 This family of proteins represents the C-terminal domain of the protein Rap-1, which plays a distinct role in silencing at the silent mating-type loci and telomeres []. The Rap-1 C terminus adopts an all-helical fold. Rap1 carries out its function by recruiting the Sir3 and Sir4 proteins to chromatin via its C-terminal domain []. ; PDB: 3K6G_C 3CZ6_A 3OWT_A.
Probab=58.33 E-value=10 Score=34.76 Aligned_cols=26 Identities=23% Similarity=0.311 Sum_probs=15.7
Q ss_pred CCCCCHHHHHHH--------HHHHHHhCCCChHHHhh
Q 047353 7 NCHICNQEDEII--------IELVNKYGPKKWSTIAQ 35 (921)
Q Consensus 7 KG~WTpEEDe~L--------i~LVekyG~k~Ws~IAk 35 (921)
.|-||+|+|+.| .+|+++|| |..|+.
T Consensus 47 ~GiWT~eDD~~L~~~~~~~~~~L~~khG---~~~i~~ 80 (87)
T PF11626_consen 47 PGIWTPEDDEMLRSGDKDDIERLIKKHG---EERIER 80 (87)
T ss_dssp TT---HHHHHHHTS--HHHHHHHHHHH----HHHHHH
T ss_pred CCCcCHHHHHHHHcCCHHHHHHHHHHhC---HHHHHH
Confidence 678999999999 56667777 455543
No 34
>COG5118 BDP1 Transcription initiation factor TFIIIB, Bdp1 subunit [Transcription]
Probab=45.08 E-value=21 Score=41.49 Aligned_cols=42 Identities=21% Similarity=0.339 Sum_probs=38.3
Q ss_pred cCCCCCHHHHHHHHHHHHHhCCCChHHHhhhCCCCCccccccC
Q 047353 6 ANCHICNQEDEIIIELVNKYGPKKWSTIAQHLPGRIGKQCRER 48 (921)
Q Consensus 6 KKG~WTpEEDe~Li~LVekyG~k~Ws~IAk~LpGRTgKQCReR 48 (921)
.--+|+.+|=++.+++..++|. .++.|++.+|.|..+|.+..
T Consensus 364 ~~~~Ws~~e~ekFYKALs~wGt-dF~LIs~lfP~R~RkqIKaK 405 (507)
T COG5118 364 GALRWSKKEIEKFYKALSIWGT-DFSLISSLFPNRERKQIKAK 405 (507)
T ss_pred CCCcccHHHHHHHHHHHHHhcc-hHHHHHHhcCchhHHHHHHH
Confidence 3458999999999999999999 99999999999999998765
No 35
>PRK13250 phycoerythrobilin:ferredoxin oxidoreductase; Provisional
Probab=42.43 E-value=18 Score=39.63 Aligned_cols=63 Identities=25% Similarity=0.421 Sum_probs=40.9
Q ss_pred CCCccccccccccccCccc--cccCccc--------------------cccccCCcc--------cccCCcccCCCCCCC
Q 047353 464 SLDIPFFSCDLIQSGNDML--QEYSPLG--------------------IRQLMSSMN--------CITPFRLWDSPSRDG 513 (921)
Q Consensus 464 s~~vp~~sCDl~~S~~~~~--~eysp~g--------------------irq~ms~~~--------~~TP~~~~~sps~~~ 513 (921)
..|+|||-||++..+.-.. -+++|+. .|.+.+=.+ ||+|..+|-.|....
T Consensus 84 ~yDLPiFGaDlv~~~~~~laalDlqPl~~~~~~Y~~~~~~~l~~~~~~~r~l~~wg~~~~~e~~~~FSp~~lf~Rp~~~~ 163 (248)
T PRK13250 84 NYDLPFFGADLVTLPGGHLIALDMQPLFRDDPAYQAKYTEPILPLFNAHQAHLPWGGDFPEEAKPFFSPAFLWTRPQETE 163 (248)
T ss_pred CCCCCccceeeeecCCceEEEEECCcccCcHHHHHHHHHHhhHHHHhhhhhcCCccccCcchhHhhcCCceEEEecCChh
Confidence 4679999999998765321 2444443 223333244 999999999997766
Q ss_pred ChHHHHHHhhhhC
Q 047353 514 SPEAVLKSAAKTF 526 (921)
Q Consensus 514 Spds~Lk~AAktF 526 (921)
..+..|-.|.+.|
T Consensus 164 ~~e~~lf~af~~Y 176 (248)
T PRK13250 164 VVETRVFEAFKDY 176 (248)
T ss_pred HHHHHHHHHHHHH
Confidence 5566555555554
No 36
>PRK13247 dihydrobiliverdin:ferredoxin oxidoreductase; Provisional
Probab=38.79 E-value=25 Score=38.33 Aligned_cols=62 Identities=19% Similarity=0.410 Sum_probs=41.4
Q ss_pred CCCcccccccccccc-Cc-cc--cccCcc-------------------------ccccccC--CcccccCCcccCCCCCC
Q 047353 464 SLDIPFFSCDLIQSG-ND-ML--QEYSPL-------------------------GIRQLMS--SMNCITPFRLWDSPSRD 512 (921)
Q Consensus 464 s~~vp~~sCDl~~S~-~~-~~--~eysp~-------------------------girq~ms--~~~~~TP~~~~~sps~~ 512 (921)
..|+|||-||++..+ .. .. -+++|+ |.|.+.+ +..||+|..+|-.|. +
T Consensus 75 ~yDLPifG~Dlv~~~~~~~laAIlDlqPl~~~~~~~~~y~~~L~~l~~~~~~~~~~~~~~~~d~~~~FSp~~lf~R~~-~ 153 (238)
T PRK13247 75 NYDLPLMGIDLLWFGKKQKLVAVLDFQPLVQDKDYLDRYFEGLKSLKERFPDLNSEETMRFYDPNQYFSPWLLFCKGG-A 153 (238)
T ss_pred CCCCCccceeEeecCCCceEEEEEecCCCCcchhhhHHHHHHHHHHHHhhHhhcCCCCCCCccccccCCCceEEeeCC-c
Confidence 567999999999985 21 11 233333 2233332 278999999999994 5
Q ss_pred CChHHHHHHhhhhC
Q 047353 513 GSPEAVLKSAAKTF 526 (921)
Q Consensus 513 ~Spds~Lk~AAktF 526 (921)
...+..|-.|.+.|
T Consensus 154 ~~~~~~l~~af~~Y 167 (238)
T PRK13247 154 ETATNSLPKAFSAF 167 (238)
T ss_pred HHHHHHHHHHHHHH
Confidence 56777777776666
No 37
>KOG2656 consensus DNA methyltransferase 1-associated protein-1 [Chromatin structure and dynamics; Transcription]
Probab=33.37 E-value=27 Score=40.74 Aligned_cols=51 Identities=20% Similarity=0.379 Sum_probs=40.4
Q ss_pred CCCCCHHHHHHHHHHHHHhCCCChHHHhhhC-----CC-CCccccccCCchhhhhhCcHHHHhHhh
Q 047353 7 NCHICNQEDEIIIELVNKYGPKKWSTIAQHL-----PG-RIGKQCRERTDNAIKNHWNSSVKKKLD 66 (921)
Q Consensus 7 KG~WTpEEDe~Li~LVekyG~k~Ws~IAk~L-----pG-RTgKQCReRTDNaIKNrWns~lKKKL~ 66 (921)
-..||.||-+.|..|++.|-= +|..||-+. +. | |-..||.||+...++-++
T Consensus 130 dn~WskeETD~LF~lck~fDL-Rf~VIaDRyd~qq~~~sR--------TvEdLKeRyY~v~r~l~k 186 (445)
T KOG2656|consen 130 DNSWSKEETDYLFDLCKRFDL-RFFVIADRYDNQQYKKSR--------TVEDLKERYYSVCRKLLK 186 (445)
T ss_pred cccccHHHHHHHHHHHHhcCe-eEEEEeeccchhhccccc--------cHHHHHHHHHHHHHHHHH
Confidence 367999999999999999997 999999773 33 6 777888887775554443
No 38
>PF08281 Sigma70_r4_2: Sigma-70, region 4; InterPro: IPR013249 The bacterial core RNA polymerase complex, which consists of five subunits, is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme []. RNA polymerase recruits alternative sigma factors as a means of switching on specific regulons. Most bacteria express a multiplicity of sigma factors. Two of these factors, sigma-70 (gene rpoD), generally known as the major or primary sigma factor, and sigma-54 (gene rpoN or ntrA) direct the transcription of a wide variety of genes. The other sigma factors, known as alternative sigma factors, are required for the transcription of specific subsets of genes. With regard to sequence similarity, sigma factors can be grouped into two classes, the sigma-54 and sigma-70 families. Sequence alignments of the sigma70 family members reveal four conserved regions that can be further divided into subregions eg. sub-region 2.2, which may be involved in the binding of the sigma factor to the core RNA polymerase; and sub-region 4.2, which seems to harbor a DNA-binding 'helix-turn-helix' motif involved in binding the conserved -35 region of promoters recognised by the major sigma factors [, ]. Region 4 of sigma-70 like sigma-factors are involved in binding to the -35 promoter element via a helix-turn-helix motif [].; GO: 0003677 DNA binding, 0003700 sequence-specific DNA binding transcription factor activity, 0016987 sigma factor activity, 0006352 transcription initiation, DNA-dependent, 0006355 regulation of transcription, DNA-dependent; PDB: 2LFW_A 1OR7_B 2H27_D 2O8X_B.
Probab=27.39 E-value=66 Score=26.14 Aligned_cols=38 Identities=21% Similarity=0.295 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHHhCCCChHHHhhhCCCCCccccccCCchhhhhhCcH
Q 047353 12 NQEDEIIIELVNKYGPKKWSTIAQHLPGRIGKQCRERTDNAIKNHWNS 59 (921)
Q Consensus 12 pEEDe~Li~LVekyG~k~Ws~IAk~LpGRTgKQCReRTDNaIKNrWns 59 (921)
++++..++.++...|- .|..||..+ |. +.+.|+++...
T Consensus 12 ~~~~r~i~~l~~~~g~-s~~eIa~~l-~~--------s~~~v~~~l~r 49 (54)
T PF08281_consen 12 PERQREIFLLRYFQGM-SYAEIAEIL-GI--------SESTVKRRLRR 49 (54)
T ss_dssp -HHHHHHHHHHHTS----HHHHHHHC-TS---------HHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCc-CHHHHHHHH-Cc--------CHHHHHHHHHH
Confidence 5778889999988898 999999888 46 66677665443
No 39
>KOG1194 consensus Predicted DNA-binding protein, contains Myb-like, SANT and ELM2 domains [Transcription]
Probab=25.69 E-value=87 Score=37.46 Aligned_cols=50 Identities=16% Similarity=0.165 Sum_probs=41.7
Q ss_pred cCcCCCCCHHHHHHHHHHHHHhCCCChHHHhhhCCCCCccccccCCchhhhhhCcHHHH
Q 047353 4 LSANCHICNQEDEIIIELVNKYGPKKWSTIAQHLPGRIGKQCRERTDNAIKNHWNSSVK 62 (921)
Q Consensus 4 ~~KKG~WTpEEDe~Li~LVekyG~k~Ws~IAk~LpGRTgKQCReRTDNaIKNrWns~lK 62 (921)
......||.||=-++-+....||. ++.+|-+.||.| +--.|..+|+..-|
T Consensus 184 ~~~~d~WT~Ed~vlFe~aF~~~GK-~F~kIrq~LP~r--------sLaSlvqyYy~~KK 233 (534)
T KOG1194|consen 184 TEFPDEWTAEDIVLFEQAFQFFGK-DFHKIRQALPHR--------SLASLVQYYYSWKK 233 (534)
T ss_pred CCCcccchHHHHHHHHHHHHHhcc-cHHHHHHHccCc--------cHHHHHHHHHHHHH
Confidence 345578999999999999999998 999999999999 77788877766433
No 40
>PF13325 MCRS_N: N-terminal region of micro-spherule protein
Probab=21.74 E-value=91 Score=33.49 Aligned_cols=57 Identities=12% Similarity=0.374 Sum_probs=0.0
Q ss_pred CcccCcCCCCCHHHHHHHHHHHHHhCCC--ChHHHhhhCC-----CCCccccccCCchhhhhhCcHHHHhHh
Q 047353 1 MLTLSANCHICNQEDEIIIELVNKYGPK--KWSTIAQHLP-----GRIGKQCRERTDNAIKNHWNSSVKKKL 65 (921)
Q Consensus 1 ml~~~KKG~WTpEEDe~Li~LVekyG~k--~Ws~IAk~Lp-----GRTgKQCReRTDNaIKNrWns~lKKKL 65 (921)
+....+|-+||.+||++|........+. .+..|-..=+ +| |...+.+||....+.++
T Consensus 67 ~~~iq~kalfS~~EE~lL~~v~s~~~p~le~Fq~LL~~n~~vFh~sR--------Tak~L~~HW~lmkqy~L 130 (199)
T PF13325_consen 67 IAAIQSKALFSKEEEQLLGTVASSSQPSLETFQELLDKNRSVFHPSR--------TAKSLQDHWRLMKQYHL 130 (199)
T ss_pred hhcccccCCCCHHHHHHHHhhhhccCCcHHHHHHHHHhChhhhcccc--------CHHHHHHHHHHHHHhch
No 41
>PRK02816 phycocyanobilin:ferredoxin oxidoreductase; Validated
Probab=21.23 E-value=57 Score=35.79 Aligned_cols=62 Identities=21% Similarity=0.405 Sum_probs=40.3
Q ss_pred CCCccccccccccccCcc-c--ccc---------------Cccc------cccccCCcccccCCcccCCCCCCCChHHHH
Q 047353 464 SLDIPFFSCDLIQSGNDM-L--QEY---------------SPLG------IRQLMSSMNCITPFRLWDSPSRDGSPEAVL 519 (921)
Q Consensus 464 s~~vp~~sCDl~~S~~~~-~--~ey---------------sp~g------irq~ms~~~~~TP~~~~~sps~~~Spds~L 519 (921)
..|+|||-||++..+.-. . -++ .+++ .|.+..=..||+|..+|-.|... ..+..+
T Consensus 92 ~yDlPiFGaDlv~~~~~~slaIlDlqPl~~~~~~~Y~~~l~~l~~~~f~~~r~lp~wg~~FSp~~lf~R~~~~-~e~~~~ 170 (243)
T PRK02816 92 RYDLPIFGADLVAGRGGISAAIVDLSPVSRTLPDAYIKALSALPKPAFSQPRELPEWGDIFSPYCLFIRPTNA-EEENQF 170 (243)
T ss_pred CCCCCccceeEeecCCceeEEEEecCcccccchHHHHHHHHhhcchhhhccccCCCccCccCcceEEecCCCH-HHHHHH
Confidence 357999999999955322 1 122 3432 23344446799999999998744 556666
Q ss_pred HHhhhhC
Q 047353 520 KSAAKTF 526 (921)
Q Consensus 520 k~AAktF 526 (921)
-.|.+.|
T Consensus 171 ~~~f~~y 177 (243)
T PRK02816 171 LDRVDEY 177 (243)
T ss_pred HHHHHHH
Confidence 6666665
Done!