Query 047353
Match_columns 921
No_of_seqs 183 out of 1230
Neff 3.6
Searched_HMMs 29240
Date Mon Mar 25 18:04:27 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047353.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/047353hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1gv2_A C-MYB, MYB proto-oncoge 99.5 7.5E-15 2.5E-19 132.8 3.1 63 5-67 2-69 (105)
2 2k9n_A MYB24; R2R3 domain, DNA 99.4 3.8E-14 1.3E-18 129.2 4.0 42 7-48 1-42 (107)
3 1gvd_A MYB proto-oncogene prot 99.4 3.4E-14 1.2E-18 114.6 3.0 46 5-50 1-46 (52)
4 1w0t_A Telomeric repeat bindin 99.4 3.2E-14 1.1E-18 115.4 2.9 44 6-49 1-46 (53)
5 3zqc_A MYB3; transcription-DNA 99.4 2.3E-14 7.9E-19 134.9 2.2 42 7-48 2-43 (131)
6 1h8a_C AMV V-MYB, MYB transfor 99.4 3.3E-14 1.1E-18 133.1 2.4 63 5-67 25-92 (128)
7 1guu_A C-MYB, MYB proto-oncoge 99.4 4.5E-14 1.5E-18 113.7 2.8 45 5-49 1-45 (52)
8 3sjm_A Telomeric repeat-bindin 99.4 9.3E-14 3.2E-18 117.8 3.3 45 4-48 8-54 (64)
9 3osg_A MYB21; transcription-DN 99.4 1.3E-13 4.3E-18 129.3 4.3 45 3-48 7-51 (126)
10 2d9a_A B-MYB, MYB-related prot 99.4 1.1E-13 3.7E-18 114.6 2.8 45 4-48 5-49 (60)
11 1ity_A TRF1; helix-turn-helix, 99.4 1.2E-13 4E-18 117.6 2.9 56 3-66 6-63 (69)
12 2dim_A Cell division cycle 5-l 99.4 9.5E-14 3.3E-18 118.3 1.1 45 4-48 6-50 (70)
13 1h89_C C-MYB, MYB proto-oncoge 99.3 1.8E-13 6.3E-18 132.0 2.2 44 5-48 56-99 (159)
14 1x41_A Transcriptional adaptor 99.3 2.8E-13 9.4E-18 112.8 2.5 49 4-52 5-53 (60)
15 2cu7_A KIAA1915 protein; nucle 99.3 2.1E-12 7.1E-17 110.9 5.0 55 4-67 6-60 (72)
16 2din_A Cell division cycle 5-l 99.3 9.5E-13 3.3E-17 111.0 2.4 54 4-67 6-59 (66)
17 2elk_A SPCC24B10.08C protein; 99.3 1.4E-12 4.9E-17 108.0 3.0 44 6-49 8-52 (58)
18 2yum_A ZZZ3 protein, zinc fing 99.2 2.1E-12 7.3E-17 111.2 1.1 53 5-65 6-63 (75)
19 2llk_A Cyclin-D-binding MYB-li 99.2 7.9E-12 2.7E-16 109.0 2.6 45 5-59 21-65 (73)
20 2ltp_A Nuclear receptor corepr 98.7 8.9E-12 3E-16 111.5 0.0 50 5-63 14-63 (89)
21 2yus_A SWI/SNF-related matrix- 99.0 9.7E-11 3.3E-15 103.2 2.6 43 5-48 16-58 (79)
22 2cqr_A RSGI RUH-043, DNAJ homo 99.0 7.8E-11 2.7E-15 102.7 1.2 44 5-48 16-62 (73)
23 1h89_C C-MYB, MYB proto-oncoge 99.0 6E-11 2.1E-15 114.5 0.2 65 5-69 4-73 (159)
24 1gv2_A C-MYB, MYB proto-oncoge 99.0 1.6E-10 5.6E-15 104.4 2.9 52 5-65 54-105 (105)
25 2k9n_A MYB24; R2R3 domain, DNA 98.9 2.5E-10 8.6E-15 104.1 2.6 52 5-65 51-102 (107)
26 3zqc_A MYB3; transcription-DNA 98.9 3.1E-10 1E-14 106.9 3.2 55 4-67 51-105 (131)
27 2aje_A Telomere repeat-binding 98.9 7.1E-10 2.4E-14 102.8 5.3 54 3-64 9-66 (105)
28 2ckx_A NGTRF1, telomere bindin 98.9 8.4E-10 2.9E-14 98.3 5.3 50 8-65 1-54 (83)
29 3osg_A MYB21; transcription-DN 98.9 4.7E-10 1.6E-14 105.2 3.5 52 4-64 59-110 (126)
30 1h8a_C AMV V-MYB, MYB transfor 98.9 5.7E-10 1.9E-14 104.4 3.2 52 5-65 77-128 (128)
31 2juh_A Telomere binding protei 98.9 1E-09 3.5E-14 104.0 4.5 52 3-62 13-68 (121)
32 1ign_A Protein (RAP1); RAP1,ye 98.9 4.9E-10 1.7E-14 116.4 2.4 56 3-66 4-64 (246)
33 2roh_A RTBP1, telomere binding 98.8 1.6E-09 5.6E-14 102.8 5.1 53 3-63 27-83 (122)
34 1x58_A Hypothetical protein 49 98.8 1.9E-09 6.6E-14 91.8 4.3 51 4-63 5-58 (62)
35 2cjj_A Radialis; plant develop 98.7 9.6E-09 3.3E-13 93.4 4.4 51 5-63 6-59 (93)
36 2eqr_A N-COR1, N-COR, nuclear 98.5 7.4E-08 2.5E-12 80.6 3.5 45 3-48 8-52 (61)
37 2cqq_A RSGI RUH-037, DNAJ homo 98.2 6.7E-07 2.3E-11 77.8 3.8 50 5-63 6-58 (72)
38 2iw5_B Protein corest, REST co 98.0 2.8E-06 9.6E-11 88.0 3.3 49 5-62 131-179 (235)
39 3hm5_A DNA methyltransferase 1 97.8 1.7E-05 5.9E-10 72.4 5.2 58 6-67 29-86 (93)
40 1fex_A TRF2-interacting telome 97.6 1.9E-05 6.5E-10 66.3 2.0 42 7-48 2-52 (59)
41 1wgx_A KIAA1903 protein; MYB D 97.5 3.7E-05 1.3E-09 67.4 2.8 44 5-48 6-52 (73)
42 1ug2_A 2610100B20RIK gene prod 96.9 0.00054 1.8E-08 62.6 4.0 46 9-62 35-82 (95)
43 4eef_G F-HB80.4, designed hema 96.9 0.00018 6E-09 63.5 0.4 42 7-48 20-64 (74)
44 2lr8_A CAsp8-associated protei 95.5 0.00043 1.5E-08 60.3 0.0 45 9-62 16-62 (70)
45 2ebi_A DNA binding protein GT- 96.0 0.00089 3E-08 58.9 -0.6 44 5-48 2-58 (86)
46 4a69_C Nuclear receptor corepr 95.8 0.0058 2E-07 55.5 3.9 40 7-47 43-82 (94)
47 2yqk_A Arginine-glutamic acid 95.8 0.007 2.4E-07 51.1 4.2 41 5-46 7-48 (63)
48 2xag_B REST corepressor 1; ami 95.7 0.0047 1.6E-07 70.1 3.5 42 6-48 379-420 (482)
49 4iej_A DNA methyltransferase 1 95.6 0.012 4.2E-07 53.9 4.9 57 6-66 29-85 (93)
50 2crg_A Metastasis associated p 94.7 0.028 9.5E-07 48.5 4.4 41 5-46 6-47 (70)
51 1ign_A Protein (RAP1); RAP1,ye 92.6 0.077 2.6E-06 55.8 4.0 28 29-64 173-200 (246)
52 4b4c_A Chromodomain-helicase-D 87.9 0.32 1.1E-05 48.4 3.7 29 8-36 135-163 (211)
53 2xb0_X Chromo domain-containin 84.6 0.59 2E-05 49.7 3.8 27 9-35 170-196 (270)
54 1ofc_X ISWI protein; nuclear p 81.5 0.78 2.7E-05 49.6 3.2 58 6-63 211-275 (304)
55 1ofc_X ISWI protein; nuclear p 79.2 1.8 6.2E-05 46.8 5.1 41 8-56 111-151 (304)
56 2xag_B REST corepressor 1; ami 73.0 0.71 2.4E-05 52.7 0.0 40 8-48 190-229 (482)
57 1irz_A ARR10-B; helix-turn-hel 71.8 4.7 0.00016 34.7 4.7 47 4-58 4-54 (64)
58 2y9y_A Imitation switch protei 71.5 2.2 7.4E-05 47.5 3.3 62 6-67 227-295 (374)
59 2juh_A Telomere binding protei 56.6 3.3 0.00011 39.5 1.0 27 5-32 76-103 (121)
60 4b4c_A Chromodomain-helicase-D 55.0 7.1 0.00024 38.7 3.2 51 4-62 4-58 (211)
61 3au4_B Netrin receptor DCC; pr 34.6 9.2 0.00031 32.8 0.3 15 818-832 49-63 (63)
No 1
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A
Probab=99.48 E-value=7.5e-15 Score=132.76 Aligned_cols=63 Identities=46% Similarity=0.829 Sum_probs=50.9
Q ss_pred CcCCCCCHHHHHHHHHHHHHhCCCChHHHhhhCCCCCccccccCCchhh-----hhhCcHHHHhHhhh
Q 047353 5 SANCHICNQEDEIIIELVNKYGPKKWSTIAQHLPGRIGKQCRERTDNAI-----KNHWNSSVKKKLDS 67 (921)
Q Consensus 5 ~KKG~WTpEEDe~Li~LVekyG~k~Ws~IAk~LpGRTgKQCReRTDNaI-----KNrWns~lKKKL~k 67 (921)
.+||+||+|||++|+++|++||.++|..||++|+||+++|||+|+-+.+ +..|.......|..
T Consensus 2 l~k~~WT~eED~~L~~~v~~~g~~~W~~Ia~~l~~Rt~~qcr~Rw~~~l~p~~~~~~Wt~eEd~~L~~ 69 (105)
T 1gv2_A 2 LIKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNPEVKKTSWTEEEDRIIYQ 69 (105)
T ss_dssp CCCSCCCHHHHHHHHHHHHHHCTTCHHHHHTTSTTCCHHHHHHHHHHTTCCCCCCCCCCHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHhCCCcHHHHhhhhcCCCHHHHHHHHHhccCCcccccCCCHHHHHHHHH
Confidence 4789999999999999999999989999999999999999999933222 34466555544443
No 2
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A
Probab=99.43 E-value=3.8e-14 Score=129.25 Aligned_cols=42 Identities=38% Similarity=0.669 Sum_probs=41.1
Q ss_pred CCCCCHHHHHHHHHHHHHhCCCChHHHhhhCCCCCccccccC
Q 047353 7 NCHICNQEDEIIIELVNKYGPKKWSTIAQHLPGRIGKQCRER 48 (921)
Q Consensus 7 KG~WTpEEDe~Li~LVekyG~k~Ws~IAk~LpGRTgKQCReR 48 (921)
||+||+|||++|+++|++||.++|..||..|+||+++|||+|
T Consensus 1 K~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~~~~Rt~~qcr~R 42 (107)
T 2k9n_A 1 KVKFTEEEDLKLQQLVMRYGAKDWIRISQLMITRNPRQCRER 42 (107)
T ss_dssp CCSSCHHHHHHHHHHHHHHCSSCHHHHHHHTTTSCHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHCCCCHHHHhhhcCCCCHHHHHHH
Confidence 799999999999999999999899999999999999999999
No 3
>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A
Probab=99.43 E-value=3.4e-14 Score=114.57 Aligned_cols=46 Identities=57% Similarity=0.961 Sum_probs=42.6
Q ss_pred CcCCCCCHHHHHHHHHHHHHhCCCChHHHhhhCCCCCccccccCCc
Q 047353 5 SANCHICNQEDEIIIELVNKYGPKKWSTIAQHLPGRIGKQCRERTD 50 (921)
Q Consensus 5 ~KKG~WTpEEDe~Li~LVekyG~k~Ws~IAk~LpGRTgKQCReRTD 50 (921)
.+||+||+|||++|+++|.+||.++|..||++|+|||++|||+|+.
T Consensus 1 l~k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~Rw~ 46 (52)
T 1gvd_A 1 LIKGPWTKEEDQRLIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWH 46 (52)
T ss_dssp CCCCSCCHHHHHHHHHHHHHHCTTCHHHHHTTSTTCCHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHHCcChHHHHHHHcCCCCHHHHHHHHH
Confidence 3789999999999999999999988999999999999999998843
No 4
>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A
Probab=99.43 E-value=3.2e-14 Score=115.44 Aligned_cols=44 Identities=27% Similarity=0.345 Sum_probs=41.3
Q ss_pred cCCCCCHHHHHHHHHHHHHhCCCChHHHhhhCC--CCCccccccCC
Q 047353 6 ANCHICNQEDEIIIELVNKYGPKKWSTIAQHLP--GRIGKQCRERT 49 (921)
Q Consensus 6 KKG~WTpEEDe~Li~LVekyG~k~Ws~IAk~Lp--GRTgKQCReRT 49 (921)
+||+||+|||++|+++|++||.++|..||..|+ |||++|||+|+
T Consensus 1 kr~~WT~eEd~~L~~~v~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw 46 (53)
T 1w0t_A 1 KRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRW 46 (53)
T ss_dssp CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHcCCCCCCHHHHHHHH
Confidence 689999999999999999999889999999999 99888888883
No 5
>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}
Probab=99.43 E-value=2.3e-14 Score=134.90 Aligned_cols=42 Identities=43% Similarity=0.803 Sum_probs=41.2
Q ss_pred CCCCCHHHHHHHHHHHHHhCCCChHHHhhhCCCCCccccccC
Q 047353 7 NCHICNQEDEIIIELVNKYGPKKWSTIAQHLPGRIGKQCRER 48 (921)
Q Consensus 7 KG~WTpEEDe~Li~LVekyG~k~Ws~IAk~LpGRTgKQCReR 48 (921)
||+||+|||++|+.+|.+||.++|..||.+||||+++|||+|
T Consensus 2 Kg~Wt~eED~~L~~~v~~~g~~~W~~Ia~~~~~Rt~~qcr~R 43 (131)
T 3zqc_A 2 KGPFTEAEDDLIREYVKENGPQNWPRITSFLPNRSPKQCRER 43 (131)
T ss_dssp CSSCCHHHHHHHHHHHHHHCSCCGGGGTTSCTTSCHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHhCcCCHHHHHHHHCCCCHHHHHHH
Confidence 799999999999999999998899999999999999999999
No 6
>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3
Probab=99.42 E-value=3.3e-14 Score=133.06 Aligned_cols=63 Identities=46% Similarity=0.814 Sum_probs=51.8
Q ss_pred CcCCCCCHHHHHHHHHHHHHhCCCChHHHhhhCCCCCccccccCCchhh-----hhhCcHHHHhHhhh
Q 047353 5 SANCHICNQEDEIIIELVNKYGPKKWSTIAQHLPGRIGKQCRERTDNAI-----KNHWNSSVKKKLDS 67 (921)
Q Consensus 5 ~KKG~WTpEEDe~Li~LVekyG~k~Ws~IAk~LpGRTgKQCReRTDNaI-----KNrWns~lKKKL~k 67 (921)
.++|+||+|||++|+++|++||.++|..||.+|+||+++|||+|+.+.+ +..|.....+.|..
T Consensus 25 ~~k~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~l~~Rt~~qcr~Rw~~~l~p~~~~~~WT~eEd~~L~~ 92 (128)
T 1h8a_C 25 LNKGPWTKEEDQRVIEHVQKYGPKRWSDIAKHLKGRIGKQCRERWHNHLNPEVKKTSWTEEEDRIIYQ 92 (128)
T ss_dssp CCCSCCCHHHHHHHHHHHHHTCSCCHHHHHHHSSSCCHHHHHHHHHHTTCSSSCCSCCCHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHhcCCcHHHHHHHHHHhcccccccccCCHHHHHHHHH
Confidence 4789999999999999999999988999999999999999999933322 44566655555544
No 7
>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A
Probab=99.42 E-value=4.5e-14 Score=113.68 Aligned_cols=45 Identities=33% Similarity=0.577 Sum_probs=40.9
Q ss_pred CcCCCCCHHHHHHHHHHHHHhCCCChHHHhhhCCCCCccccccCC
Q 047353 5 SANCHICNQEDEIIIELVNKYGPKKWSTIAQHLPGRIGKQCRERT 49 (921)
Q Consensus 5 ~KKG~WTpEEDe~Li~LVekyG~k~Ws~IAk~LpGRTgKQCReRT 49 (921)
.+||+||+|||++|+++|++||.++|..||++|+|||++|||+|+
T Consensus 1 i~~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~Rw 45 (52)
T 1guu_A 1 LGKTRWTREEDEKLKKLVEQNGTDDWKVIANYLPNRTDVQCQHRW 45 (52)
T ss_dssp --CCCCCHHHHHHHHHHHHHHCSSCHHHHHHTSTTCCHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHcCCCCHHHHHHHH
Confidence 378999999999999999999998999999999999998888883
No 8
>3sjm_A Telomeric repeat-binding factor 2; human telomeric repeat binding protein 2, telomere, telomeri homeodomain proteins amino acid sequence; HET: DNA; 1.35A {Homo sapiens} PDB: 1xg1_A 1vfc_A 1vf9_A 1w0u_A
Probab=99.39 E-value=9.3e-14 Score=117.82 Aligned_cols=45 Identities=24% Similarity=0.491 Sum_probs=40.9
Q ss_pred cCcCCCCCHHHHHHHHHHHHHhCCCChHHHhhhCC--CCCccccccC
Q 047353 4 LSANCHICNQEDEIIIELVNKYGPKKWSTIAQHLP--GRIGKQCRER 48 (921)
Q Consensus 4 ~~KKG~WTpEEDe~Li~LVekyG~k~Ws~IAk~Lp--GRTgKQCReR 48 (921)
..||++||+|||++|+++|++||.++|..||++++ |||++|||+|
T Consensus 8 ~~kk~~WT~eED~~L~~~V~~~G~~~W~~Ia~~~~~~~Rt~~qcr~R 54 (64)
T 3sjm_A 8 ITKKQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDR 54 (64)
T ss_dssp --CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHccCCCchHHHHhhcCCCCCCHHHHHHH
Confidence 46899999999999999999999989999999976 9999999888
No 9
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A
Probab=99.39 E-value=1.3e-13 Score=129.31 Aligned_cols=45 Identities=31% Similarity=0.631 Sum_probs=43.1
Q ss_pred ccCcCCCCCHHHHHHHHHHHHHhCCCChHHHhhhCCCCCccccccC
Q 047353 3 TLSANCHICNQEDEIIIELVNKYGPKKWSTIAQHLPGRIGKQCRER 48 (921)
Q Consensus 3 ~~~KKG~WTpEEDe~Li~LVekyG~k~Ws~IAk~LpGRTgKQCReR 48 (921)
...+||+||+|||++|+++|++||. +|..||+.|+||+++|||+|
T Consensus 7 ~~~kk~~WT~eED~~L~~~v~~~G~-~W~~Ia~~~~~Rt~~qcr~R 51 (126)
T 3osg_A 7 KAAKKQKFTPEEDEMLKRAVAQHGS-DWKMIAATFPNRNARQCRDR 51 (126)
T ss_dssp CBCSSCCCCHHHHHHHHHHHHHHTT-CHHHHHHTCTTCCHHHHHHH
T ss_pred CCCCCCCCCHHHHHHHHHHHHHhCC-CHHHHHHHcCCCCHHHHHHH
Confidence 3578999999999999999999999 99999999999999999999
No 10
>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus}
Probab=99.38 E-value=1.1e-13 Score=114.58 Aligned_cols=45 Identities=33% Similarity=0.686 Sum_probs=42.2
Q ss_pred cCcCCCCCHHHHHHHHHHHHHhCCCChHHHhhhCCCCCccccccC
Q 047353 4 LSANCHICNQEDEIIIELVNKYGPKKWSTIAQHLPGRIGKQCRER 48 (921)
Q Consensus 4 ~~KKG~WTpEEDe~Li~LVekyG~k~Ws~IAk~LpGRTgKQCReR 48 (921)
..+|++||+|||++|+++|++||.++|..||++|+|||++|||+|
T Consensus 5 ~~~k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~R 49 (60)
T 2d9a_A 5 SSGKVKWTHEEDEQLRALVRQFGQQDWKFLASHFPNRTDQQCQYR 49 (60)
T ss_dssp CCCCSCCCHHHHHHHHHHHHHTCTTCHHHHHHHCSSSCHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHccCCCHHHHHHH
Confidence 468999999999999999999998799999999999988888888
No 11
>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A
Probab=99.38 E-value=1.2e-13 Score=117.59 Aligned_cols=56 Identities=29% Similarity=0.386 Sum_probs=49.2
Q ss_pred ccCcCCCCCHHHHHHHHHHHHHhCCCChHHHhhhCC--CCCccccccCCchhhhhhCcHHHHhHhh
Q 047353 3 TLSANCHICNQEDEIIIELVNKYGPKKWSTIAQHLP--GRIGKQCRERTDNAIKNHWNSSVKKKLD 66 (921)
Q Consensus 3 ~~~KKG~WTpEEDe~Li~LVekyG~k~Ws~IAk~Lp--GRTgKQCReRTDNaIKNrWns~lKKKL~ 66 (921)
..+++++||+|||++|+++|++||.++|..||++|+ ||+++|||+| |+.+++..+.
T Consensus 6 ~~~~r~~WT~eED~~L~~~v~~~G~~~W~~Ia~~~~~~~Rt~~qcr~R--------w~~~l~p~i~ 63 (69)
T 1ity_A 6 RARKRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDR--------WRTMKKLKLI 63 (69)
T ss_dssp CSSSCCCCCHHHHHHHHHHHHHHCSSCHHHHHHHSCCSSCCHHHHHHH--------HHHHHHTSCC
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHCCCcHHHHHHHcCcCCCCHHHHHHH--------HHHHcCCCCC
Confidence 357899999999999999999999889999999999 9988888877 7777776653
No 12
>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.36 E-value=9.5e-14 Score=118.29 Aligned_cols=45 Identities=40% Similarity=0.586 Sum_probs=42.8
Q ss_pred cCcCCCCCHHHHHHHHHHHHHhCCCChHHHhhhCCCCCccccccC
Q 047353 4 LSANCHICNQEDEIIIELVNKYGPKKWSTIAQHLPGRIGKQCRER 48 (921)
Q Consensus 4 ~~KKG~WTpEEDe~Li~LVekyG~k~Ws~IAk~LpGRTgKQCReR 48 (921)
..++|+||+|||++|+++|++||.++|..||.+|+||+++|||+|
T Consensus 6 ~~k~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~l~~Rt~~qcr~R 50 (70)
T 2dim_A 6 SGKGGVWRNTEDEILKAAVMKYGKNQWSRIASLLHRKSAKQCKAR 50 (70)
T ss_dssp CSTTCCCCHHHHHHHHHHHHHTCSSCHHHHHHHSTTCCHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHhcCCCHHHHHHH
Confidence 468999999999999999999997799999999999999999998
No 13
>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C
Probab=99.34 E-value=1.8e-13 Score=132.04 Aligned_cols=44 Identities=59% Similarity=1.030 Sum_probs=42.4
Q ss_pred CcCCCCCHHHHHHHHHHHHHhCCCChHHHhhhCCCCCccccccC
Q 047353 5 SANCHICNQEDEIIIELVNKYGPKKWSTIAQHLPGRIGKQCRER 48 (921)
Q Consensus 5 ~KKG~WTpEEDe~Li~LVekyG~k~Ws~IAk~LpGRTgKQCReR 48 (921)
.++|+||+|||++|+++|.+||.++|..||.+|+||+++|||+|
T Consensus 56 ~~~~~Wt~eEd~~L~~~v~~~g~~~W~~Ia~~l~~Rt~~qcr~R 99 (159)
T 1h89_C 56 LIKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKGRIGKQCRER 99 (159)
T ss_dssp CCCSCCCHHHHHHHHHHHHHHCSCCHHHHHHTSTTCCHHHHHHH
T ss_pred cCCCCCChHHHHHHHHHHHHhCcccHHHHHHHcCCCCHHHHHHH
Confidence 46899999999999999999998889999999999999999999
No 14
>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.33 E-value=2.8e-13 Score=112.77 Aligned_cols=49 Identities=18% Similarity=0.318 Sum_probs=44.0
Q ss_pred cCcCCCCCHHHHHHHHHHHHHhCCCChHHHhhhCCCCCccccccCCchh
Q 047353 4 LSANCHICNQEDEIIIELVNKYGPKKWSTIAQHLPGRIGKQCRERTDNA 52 (921)
Q Consensus 4 ~~KKG~WTpEEDe~Li~LVekyG~k~Ws~IAk~LpGRTgKQCReRTDNa 52 (921)
-.++++||+|||++|+++|++||.++|..||++|+|||++|||+|+.+.
T Consensus 5 ~~~~~~WT~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~r~~~~ 53 (60)
T 1x41_A 5 SSGDPSWTAQEEMALLEAVMDCGFGNWQDVANQMCTKTKEECEKHYMKY 53 (60)
T ss_dssp CCCCSSSCHHHHHHHHHHHHHTCTTCHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHHHCcCcHHHHHHHhCCCCHHHHHHHHHHH
Confidence 4678999999999999999999977999999999999999999884433
No 15
>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=99.28 E-value=2.1e-12 Score=110.88 Aligned_cols=55 Identities=20% Similarity=0.313 Sum_probs=48.5
Q ss_pred cCcCCCCCHHHHHHHHHHHHHhCCCChHHHhhhCCCCCccccccCCchhhhhhCcHHHHhHhhh
Q 047353 4 LSANCHICNQEDEIIIELVNKYGPKKWSTIAQHLPGRIGKQCRERTDNAIKNHWNSSVKKKLDS 67 (921)
Q Consensus 4 ~~KKG~WTpEEDe~Li~LVekyG~k~Ws~IAk~LpGRTgKQCReRTDNaIKNrWns~lKKKL~k 67 (921)
..++|+||+|||++|+++|++||. +|..||++|+|| |+++|||||+.+++++++.
T Consensus 6 ~~~~~~WT~eEd~~l~~~~~~~G~-~W~~Ia~~~~~R--------t~~q~k~r~~~~l~~~~~~ 60 (72)
T 2cu7_A 6 SGYSVKWTIEEKELFEQGLAKFGR-RWTKISKLIGSR--------TVLQVKSYARQYFKNKVKC 60 (72)
T ss_dssp SSCCCCCCHHHHHHHHHHHHHTCS-CHHHHHHHHSSS--------CHHHHHHHHHHHHHHHSCS
T ss_pred CcCCCCCCHHHHHHHHHHHHHHCc-CHHHHHHHcCCC--------CHHHHHHHHHHHHHHHHhc
Confidence 367999999999999999999999 999999999999 5666667799999887654
No 16
>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.27 E-value=9.5e-13 Score=110.97 Aligned_cols=54 Identities=24% Similarity=0.433 Sum_probs=46.8
Q ss_pred cCcCCCCCHHHHHHHHHHHHHhCCCChHHHhhhCCCCCccccccCCchhhhhhCcHHHHhHhhh
Q 047353 4 LSANCHICNQEDEIIIELVNKYGPKKWSTIAQHLPGRIGKQCRERTDNAIKNHWNSSVKKKLDS 67 (921)
Q Consensus 4 ~~KKG~WTpEEDe~Li~LVekyG~k~Ws~IAk~LpGRTgKQCReRTDNaIKNrWns~lKKKL~k 67 (921)
..+|++||+|||++|+++|++||. +|..||+ |+|||++|||+| |+.+++..++.
T Consensus 6 ~~~k~~WT~eED~~L~~~~~~~g~-~W~~Ia~-~~gRt~~qcr~R--------w~~~l~~~~~~ 59 (66)
T 2din_A 6 SGKKTEWSREEEEKLLHLAKLMPT-QWRTIAP-IIGRTAAQCLEH--------YEFLLDKAAQR 59 (66)
T ss_dssp SSSCCCCCHHHHHHHHHHHHHCTT-CHHHHHH-HHSSCHHHHHHH--------HHHHHHHHHHS
T ss_pred CCCCCCCCHHHHHHHHHHHHHcCC-CHHHHhc-ccCcCHHHHHHH--------HHHHhChHhcC
Confidence 367899999999999999999999 9999999 889977666666 88888877654
No 17
>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe}
Probab=99.26 E-value=1.4e-12 Score=108.04 Aligned_cols=44 Identities=20% Similarity=0.449 Sum_probs=41.5
Q ss_pred cCCCCCHHHHHHHHHHHHHhCCCChHHHhhhCC-CCCccccccCC
Q 047353 6 ANCHICNQEDEIIIELVNKYGPKKWSTIAQHLP-GRIGKQCRERT 49 (921)
Q Consensus 6 KKG~WTpEEDe~Li~LVekyG~k~Ws~IAk~Lp-GRTgKQCReRT 49 (921)
.+++||+|||++|+++|++||.++|..||++|+ |||++|||+|+
T Consensus 8 ~~~~WT~eED~~L~~~v~~~G~~~W~~IA~~~~~~Rt~~qcr~r~ 52 (58)
T 2elk_A 8 FDENWGADEELLLIDACETLGLGNWADIADYVGNARTKEECRDHY 52 (58)
T ss_dssp CCCCCCHHHHHHHHHHHHHTTTTCHHHHHHHHCSSCCHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHHCCCCCHHHHHHHH
Confidence 478999999999999999999879999999999 99999999984
No 18
>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.20 E-value=2.1e-12 Score=111.16 Aligned_cols=53 Identities=28% Similarity=0.384 Sum_probs=45.7
Q ss_pred CcCCCCCHHHHHHHHHHHHHhCC-----CChHHHhhhCCCCCccccccCCchhhhhhCcHHHHhHh
Q 047353 5 SANCHICNQEDEIIIELVNKYGP-----KKWSTIAQHLPGRIGKQCRERTDNAIKNHWNSSVKKKL 65 (921)
Q Consensus 5 ~KKG~WTpEEDe~Li~LVekyG~-----k~Ws~IAk~LpGRTgKQCReRTDNaIKNrWns~lKKKL 65 (921)
.++++||+|||++|+++|++||. .+|..||++|+|||++|||+| |+.++++.+
T Consensus 6 ~~~~~WT~eEd~~L~~~v~~~g~~~~~~~~W~~IA~~~~~Rt~~qcr~r--------~~~~l~~~~ 63 (75)
T 2yum_A 6 SGNQLWTVEEQKKLEQLLIKYPPEEVESRRWQKIADELGNRTAKQVASQ--------VQKYFIKLT 63 (75)
T ss_dssp CCSSCCCHHHHHHHHHHHHHSCCCSCHHHHHHHHHHHHSSSCHHHHHHH--------HHHHHGGGS
T ss_pred CCCCCCCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHhCCCCHHHHHHH--------HHHHHHHHH
Confidence 57899999999999999999995 589999999999988888777 766665544
No 19
>2llk_A Cyclin-D-binding MYB-like transcription factor 1; helix bundle, SGC, structural genomics consortium, NESG, NOR structural genomics consortium; NMR {Homo sapiens}
Probab=99.16 E-value=7.9e-12 Score=109.04 Aligned_cols=45 Identities=29% Similarity=0.403 Sum_probs=40.2
Q ss_pred CcCCCCCHHHHHHHHHHHHHhCCCChHHHhhhCCCCCccccccCCchhhhhhCcH
Q 047353 5 SANCHICNQEDEIIIELVNKYGPKKWSTIAQHLPGRIGKQCRERTDNAIKNHWNS 59 (921)
Q Consensus 5 ~KKG~WTpEEDe~Li~LVekyG~k~Ws~IAk~LpGRTgKQCReRTDNaIKNrWns 59 (921)
.+||+||+|||++|+++|++||+ +|+.||+.| || |+++|||||+.
T Consensus 21 i~k~~wT~EED~~L~~l~~~~G~-kW~~IA~~l-gR--------t~~q~knRw~~ 65 (73)
T 2llk_A 21 NHVGKYTPEEIEKLKELRIKHGN-DWATIGAAL-GR--------SASSVKDRCRL 65 (73)
T ss_dssp CCCCSSCHHHHHHHHHHHHHHSS-CHHHHHHHH-TS--------CHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHHCC-CHHHHHHHh-CC--------CHHHHHHHHHH
Confidence 57899999999999999999999 699999999 99 66666666875
No 20
>2ltp_A Nuclear receptor corepressor 2; SMRT, TRAC, SGC, structural genomics consortium, NESG, north structural genomics consortium; NMR {Homo sapiens}
Probab=98.69 E-value=8.9e-12 Score=111.51 Aligned_cols=50 Identities=18% Similarity=0.191 Sum_probs=43.5
Q ss_pred CcCCCCCHHHHHHHHHHHHHhCCCChHHHhhhCCCCCccccccCCchhhhhhCcHHHHh
Q 047353 5 SANCHICNQEDEIIIELVNKYGPKKWSTIAQHLPGRIGKQCRERTDNAIKNHWNSSVKK 63 (921)
Q Consensus 5 ~KKG~WTpEEDe~Li~LVekyG~k~Ws~IAk~LpGRTgKQCReRTDNaIKNrWns~lKK 63 (921)
..+|+||+|||++|+++|.+||. +|..||.+|+|||++|||+| |+.++++
T Consensus 14 ~~~~~WT~eEd~~l~~~~~~~G~-~W~~IA~~l~gRt~~q~k~r--------~~~~lrk 63 (89)
T 2ltp_A 14 LYFQGWTEEEMGTAKKGLLEHGR-NWSAIARMVGSKTVSQCKNF--------YFNYKKR 63 (89)
Confidence 56899999999999999999999 89999999999977777666 6666554
No 21
>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens}
Probab=99.00 E-value=9.7e-11 Score=103.22 Aligned_cols=43 Identities=23% Similarity=0.505 Sum_probs=40.2
Q ss_pred CcCCCCCHHHHHHHHHHHHHhCCCChHHHhhhCCCCCccccccC
Q 047353 5 SANCHICNQEDEIIIELVNKYGPKKWSTIAQHLPGRIGKQCRER 48 (921)
Q Consensus 5 ~KKG~WTpEEDe~Li~LVekyG~k~Ws~IAk~LpGRTgKQCReR 48 (921)
..+++||+|||++|+++|++|| ++|..||++|++||++|||+|
T Consensus 16 ~~~~~WT~eEd~~Ll~~v~~~G-~~W~~IA~~v~~RT~~qcr~r 58 (79)
T 2yus_A 16 SAGREWTEQETLLLLEALEMYK-DDWNKVSEHVGSRTQDECILH 58 (79)
T ss_dssp CCSCCCCHHHHHHHHHHHHHSS-SCHHHHHHHHSSCCHHHHHHH
T ss_pred ccCCCcCHHHHHHHHHHHHHhC-CCHHHHHHHcCCCCHHHHHHH
Confidence 4579999999999999999999 599999999999999999888
No 22
>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=98.98 E-value=7.8e-11 Score=102.73 Aligned_cols=44 Identities=20% Similarity=0.444 Sum_probs=39.2
Q ss_pred CcCCCCCHHHHHHHHHHHHHhC---CCChHHHhhhCCCCCccccccC
Q 047353 5 SANCHICNQEDEIIIELVNKYG---PKKWSTIAQHLPGRIGKQCRER 48 (921)
Q Consensus 5 ~KKG~WTpEEDe~Li~LVekyG---~k~Ws~IAk~LpGRTgKQCReR 48 (921)
..+++||+|||++|++++++|| +.+|.+||++|||||++|||+|
T Consensus 16 ~~~~~WT~eEd~~L~~al~~~g~~~~~rW~~IA~~vpGRT~~qcr~R 62 (73)
T 2cqr_A 16 SAEEPWTQNQQKLLELALQQYPRGSSDCWDKIARCVPSKSKEDCIAR 62 (73)
T ss_dssp CSSCCCCHHHHHHHHHHHHHSCSSSHHHHHHHGGGCSSSCHHHHHHH
T ss_pred cCCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcCCCCHHHHHHH
Confidence 4578999999999999999999 3489999999999977777777
No 23
>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C
Probab=98.97 E-value=6e-11 Score=114.52 Aligned_cols=65 Identities=26% Similarity=0.527 Sum_probs=19.2
Q ss_pred CcCCCCCHHHHHHHHHHHHHhCCCChHHHhhhCCCCCccccccCCchhh-----hhhCcHHHHhHhhhhh
Q 047353 5 SANCHICNQEDEIIIELVNKYGPKKWSTIAQHLPGRIGKQCRERTDNAI-----KNHWNSSVKKKLDSYL 69 (921)
Q Consensus 5 ~KKG~WTpEEDe~Li~LVekyG~k~Ws~IAk~LpGRTgKQCReRTDNaI-----KNrWns~lKKKL~k~~ 69 (921)
.+||+||+|||++|+++|++||.++|..||+.|+||+++|||+|+.+.+ +..|......+|.++.
T Consensus 4 ~~k~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~l~~Rt~~qcr~Rw~~~l~p~~~~~~Wt~eEd~~L~~~v 73 (159)
T 1h89_C 4 LGKTRWTREEDEKLKKLVEQNGTDDWKVIANYLPNRTDVQCQHRWQKVLNPELIKGPWTKEEDQRVIKLV 73 (159)
T ss_dssp ---------------------------------------CHHHHHHTTTCTTCCCSCCCHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHcCCCCHHHHHHHHHHccCCCcCCCCCChHHHHHHHHHH
Confidence 5789999999999999999999889999999999999999999954443 6789998887776643
No 24
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A
Probab=98.97 E-value=1.6e-10 Score=104.39 Aligned_cols=52 Identities=46% Similarity=0.856 Sum_probs=45.5
Q ss_pred CcCCCCCHHHHHHHHHHHHHhCCCChHHHhhhCCCCCccccccCCchhhhhhCcHHHHhHh
Q 047353 5 SANCHICNQEDEIIIELVNKYGPKKWSTIAQHLPGRIGKQCRERTDNAIKNHWNSSVKKKL 65 (921)
Q Consensus 5 ~KKG~WTpEEDe~Li~LVekyG~k~Ws~IAk~LpGRTgKQCReRTDNaIKNrWns~lKKKL 65 (921)
.++|+||+|||++|+++|.+||. +|..||++|||| |+++|||||+.++++++
T Consensus 54 ~~~~~Wt~eEd~~L~~~~~~~G~-~W~~Ia~~l~gR--------t~~~~k~rw~~~~~~~~ 105 (105)
T 1gv2_A 54 VKKTSWTEEEDRIIYQAHKRLGN-RWAEIAKLLPGR--------TDNAIKNHWNSTMRRKV 105 (105)
T ss_dssp CCCCCCCHHHHHHHHHHHHHHSS-CHHHHHTTCTTC--------CHHHHHHHHHHHTC---
T ss_pred ccccCCCHHHHHHHHHHHHHhCC-CHHHHHHHcCCC--------CHHHHHHHHHHHHhccC
Confidence 47899999999999999999998 999999999999 77777888999888874
No 25
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A
Probab=98.93 E-value=2.5e-10 Score=104.10 Aligned_cols=52 Identities=29% Similarity=0.578 Sum_probs=46.9
Q ss_pred CcCCCCCHHHHHHHHHHHHHhCCCChHHHhhhCCCCCccccccCCchhhhhhCcHHHHhHh
Q 047353 5 SANCHICNQEDEIIIELVNKYGPKKWSTIAQHLPGRIGKQCRERTDNAIKNHWNSSVKKKL 65 (921)
Q Consensus 5 ~KKG~WTpEEDe~Li~LVekyG~k~Ws~IAk~LpGRTgKQCReRTDNaIKNrWns~lKKKL 65 (921)
.++|+||+|||++|+++|.+||+ +|..||++|||| |+++|||||+.++++..
T Consensus 51 i~~~~WT~eEd~~L~~~~~~~G~-~W~~Ia~~l~gR--------t~~~~k~rw~~l~r~~~ 102 (107)
T 2k9n_A 51 LRTDPWSPEEDMLLDQKYAEYGP-KWNKISKFLKNR--------SDNNIRNRWMMIARHRA 102 (107)
T ss_dssp CTTCCCCHHHHHHHHHHHHHTCS-CHHHHHHHHSSS--------CHHHHHHHHHHHHHHHH
T ss_pred ccccccCHHHHHHHHHHHHHhCc-CHHHHHHHCCCC--------CHHHHHHHHHHHHhhHH
Confidence 47899999999999999999998 999999999999 77777888998877654
No 26
>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}
Probab=98.93 E-value=3.1e-10 Score=106.91 Aligned_cols=55 Identities=47% Similarity=0.749 Sum_probs=49.1
Q ss_pred cCcCCCCCHHHHHHHHHHHHHhCCCChHHHhhhCCCCCccccccCCchhhhhhCcHHHHhHhhh
Q 047353 4 LSANCHICNQEDEIIIELVNKYGPKKWSTIAQHLPGRIGKQCRERTDNAIKNHWNSSVKKKLDS 67 (921)
Q Consensus 4 ~~KKG~WTpEEDe~Li~LVekyG~k~Ws~IAk~LpGRTgKQCReRTDNaIKNrWns~lKKKL~k 67 (921)
..++|+||+|||++|+++|.+||. +|..||++|+|| |+++|||||+.++++++..
T Consensus 51 ~~~~~~Wt~eEd~~L~~~~~~~G~-~W~~Ia~~l~gR--------t~~~~k~rw~~~l~~~~~~ 105 (131)
T 3zqc_A 51 AVVKHAWTPEEDETIFRNYLKLGS-KWSVIAKLIPGR--------TDNAIKNRWNSSISKRIST 105 (131)
T ss_dssp TCCCSCCCHHHHHHHHHHHHHSCS-CHHHHTTTSTTC--------CHHHHHHHHHHTTGGGCCC
T ss_pred cccCCCCCHHHHHHHHHHHHHHCc-CHHHHHHHcCCC--------CHHHHHHHHHHHHHHHhhc
Confidence 357899999999999999999998 999999999999 7777777799999888754
No 27
>2aje_A Telomere repeat-binding protein; DNA-binding, Trp, MYB motif, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.3
Probab=98.92 E-value=7.1e-10 Score=102.82 Aligned_cols=54 Identities=20% Similarity=0.356 Sum_probs=46.6
Q ss_pred ccCcCCCCCHHHHHHHHHHHHHhCCCChHHHhhhC----CCCCccccccCCchhhhhhCcHHHHhH
Q 047353 3 TLSANCHICNQEDEIIIELVNKYGPKKWSTIAQHL----PGRIGKQCRERTDNAIKNHWNSSVKKK 64 (921)
Q Consensus 3 ~~~KKG~WTpEEDe~Li~LVekyG~k~Ws~IAk~L----pGRTgKQCReRTDNaIKNrWns~lKKK 64 (921)
..+++++||+|||++|+.+|++||.++|..|++.+ +|| |++.||++|+.++|+.
T Consensus 9 ~rr~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~f~~R--------T~v~lKdrWrnllk~~ 66 (105)
T 2aje_A 9 QRRIRRPFSVAEVEALVQAVEKLGTGRWRDVKLCAFEDADHR--------TYVDLKDKWKTLVHTA 66 (105)
T ss_dssp CCCCCCSCCHHHHHHHHHHHHHHCSSSHHHHHSSSSSSTTCC--------CHHHHHHHHHHHHHTT
T ss_pred CCCCCCCCCHHHHHHHHHHHHHhCCCChHHHHHHhccccCCC--------CHHHHHHHHHHHHhhc
Confidence 46789999999999999999999999999999976 799 6666777788877644
No 28
>2ckx_A NGTRF1, telomere binding protein TBP1; nuclear protein; 1.9A {Nicotiana tabacum} SCOP: a.4.1.3 PDB: 2qhb_A
Probab=98.91 E-value=8.4e-10 Score=98.35 Aligned_cols=50 Identities=22% Similarity=0.402 Sum_probs=43.2
Q ss_pred CCCCHHHHHHHHHHHHHhCCCChHHHhhh----CCCCCccccccCCchhhhhhCcHHHHhHh
Q 047353 8 CHICNQEDEIIIELVNKYGPKKWSTIAQH----LPGRIGKQCRERTDNAIKNHWNSSVKKKL 65 (921)
Q Consensus 8 G~WTpEEDe~Li~LVekyG~k~Ws~IAk~----LpGRTgKQCReRTDNaIKNrWns~lKKKL 65 (921)
++||+|||++|+++|++||.++|..|++. ++|| |++.||++|+.++|+..
T Consensus 1 r~WT~eEd~~L~~gv~k~G~g~W~~I~~~~~~~~~~R--------T~~~lKdrWrnllk~~~ 54 (83)
T 2ckx_A 1 RPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHR--------TYVDLKDKWKTLVHTAS 54 (83)
T ss_dssp CCCCHHHHHHHHHHHHHHCSSCHHHHHHHHCTTCTTS--------CHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHCCCCcHHHHHhhccccCCC--------CHHHHHHHHHHHHHhcc
Confidence 58999999999999999999999999996 8999 66666677988877553
No 29
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A
Probab=98.90 E-value=4.7e-10 Score=105.15 Aligned_cols=52 Identities=33% Similarity=0.665 Sum_probs=45.6
Q ss_pred cCcCCCCCHHHHHHHHHHHHHhCCCChHHHhhhCCCCCccccccCCchhhhhhCcHHHHhH
Q 047353 4 LSANCHICNQEDEIIIELVNKYGPKKWSTIAQHLPGRIGKQCRERTDNAIKNHWNSSVKKK 64 (921)
Q Consensus 4 ~~KKG~WTpEEDe~Li~LVekyG~k~Ws~IAk~LpGRTgKQCReRTDNaIKNrWns~lKKK 64 (921)
..++|+||+|||++|+++|.+||. +|..||++|||| |+++|||||+.++++.
T Consensus 59 ~~~~~~WT~eEd~~L~~~v~~~G~-~W~~Ia~~l~gR--------t~~~~k~rw~~l~~k~ 110 (126)
T 3osg_A 59 SISHTPWTAEEDALLVQKIQEYGR-QWAIIAKFFPGR--------TDIHIKNRWVTISNKL 110 (126)
T ss_dssp TSCCSCCCHHHHHHHHHHHHHHCS-CHHHHHTTSTTC--------CHHHHHHHHHHHHHHT
T ss_pred ccccccCCHHHHHHHHHHHHHHCc-CHHHHHHHcCCC--------CHHHHHHHHHHHHHhc
Confidence 357899999999999999999997 999999999999 6677777798876654
No 30
>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3
Probab=98.88 E-value=5.7e-10 Score=104.41 Aligned_cols=52 Identities=44% Similarity=0.850 Sum_probs=46.7
Q ss_pred CcCCCCCHHHHHHHHHHHHHhCCCChHHHhhhCCCCCccccccCCchhhhhhCcHHHHhHh
Q 047353 5 SANCHICNQEDEIIIELVNKYGPKKWSTIAQHLPGRIGKQCRERTDNAIKNHWNSSVKKKL 65 (921)
Q Consensus 5 ~KKG~WTpEEDe~Li~LVekyG~k~Ws~IAk~LpGRTgKQCReRTDNaIKNrWns~lKKKL 65 (921)
.++|+||+|||++|+++|.+||+ +|..||++|||| |+++|||||+.++|+++
T Consensus 77 ~~~~~WT~eEd~~L~~~~~~~G~-~W~~Ia~~l~gR--------t~~~~k~r~~~~~~~~~ 128 (128)
T 1h8a_C 77 VKKTSWTEEEDRIIYQAHKRLGN-RWAEIAKLLPGR--------TDNAVKNHWNSTMRRKV 128 (128)
T ss_dssp SCCSCCCHHHHHHHHHHHHHHCS-CHHHHGGGSTTC--------CHHHHHHHHHTTTTC--
T ss_pred cccccCCHHHHHHHHHHHHHHCc-CHHHHHHHCCCC--------CHHHHHHHHHHHHhccC
Confidence 57899999999999999999998 999999999999 77888888999888764
No 31
>2juh_A Telomere binding protein TBP1; helix, nucleus, nuclear protein; NMR {Nicotiana glutinosa}
Probab=98.87 E-value=1e-09 Score=104.03 Aligned_cols=52 Identities=19% Similarity=0.356 Sum_probs=43.4
Q ss_pred ccCcCCCCCHHHHHHHHHHHHHhCCCChHHHhhhC----CCCCccccccCCchhhhhhCcHHHH
Q 047353 3 TLSANCHICNQEDEIIIELVNKYGPKKWSTIAQHL----PGRIGKQCRERTDNAIKNHWNSSVK 62 (921)
Q Consensus 3 ~~~KKG~WTpEEDe~Li~LVekyG~k~Ws~IAk~L----pGRTgKQCReRTDNaIKNrWns~lK 62 (921)
..++|++||+|||+.|+++|++||.++|..|++.+ +|||+ +.||++|+.+++
T Consensus 13 ~rr~r~~WT~EEd~~L~~gV~k~G~G~W~~Ia~~~~~~f~~RT~--------v~lKdRWrnllk 68 (121)
T 2juh_A 13 QRRIRRPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTY--------VDLKDKWKTLVH 68 (121)
T ss_dssp CCCSSCCCCHHHHHHHHHHHHHHGGGCHHHHHHHHCSCCSSCCS--------HHHHHHHHHHHH
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHhccccCCCCH--------HHHHHHHHHHHh
Confidence 46789999999999999999999999999999984 89955 455555666665
No 32
>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A
Probab=98.87 E-value=4.9e-10 Score=116.42 Aligned_cols=56 Identities=23% Similarity=0.519 Sum_probs=47.8
Q ss_pred ccCcCCCCCHHHHHHHHHHHHHhCCCC-----hHHHhhhCCCCCccccccCCchhhhhhCcHHHHhHhh
Q 047353 3 TLSANCHICNQEDEIIIELVNKYGPKK-----WSTIAQHLPGRIGKQCRERTDNAIKNHWNSSVKKKLD 66 (921)
Q Consensus 3 ~~~KKG~WTpEEDe~Li~LVekyG~k~-----Ws~IAk~LpGRTgKQCReRTDNaIKNrWns~lKKKL~ 66 (921)
...+|++||+|||++|+.+|++||+++ |..||++|||| |+|+|||||+.+|++++.
T Consensus 4 ~~~~k~~FT~EED~~Ile~v~k~Gn~r~ghk~W~~IAk~LpGR--------T~nsIRnRw~~~L~~~ln 64 (246)
T 1ign_A 4 PSHNKASFTDEEDEFILDVVRKNPTRRTTHTLYDEISHYVPNH--------TGNSIRHRFRVYLSKRLE 64 (246)
T ss_dssp ----CCCCCHHHHHHHHHHHHTSGGGTTCSHHHHHHTTTSTTS--------CHHHHHHHHHHTTGGGCC
T ss_pred CCCCCCCCCHHHHHHHHHHHHHhCcCccccccHHHHHHHcCCC--------CHHHHHHHHHHHHhhhcc
Confidence 346789999999999999999999853 99999999999 778888889999999875
No 33
>2roh_A RTBP1, telomere binding protein-1; plant, nucleus, DNA binding protein; NMR {Oryza sativa}
Probab=98.85 E-value=1.6e-09 Score=102.77 Aligned_cols=53 Identities=17% Similarity=0.353 Sum_probs=44.1
Q ss_pred ccCcCCCCCHHHHHHHHHHHHHhCCCChHHHhhhC----CCCCccccccCCchhhhhhCcHHHHh
Q 047353 3 TLSANCHICNQEDEIIIELVNKYGPKKWSTIAQHL----PGRIGKQCRERTDNAIKNHWNSSVKK 63 (921)
Q Consensus 3 ~~~KKG~WTpEEDe~Li~LVekyG~k~Ws~IAk~L----pGRTgKQCReRTDNaIKNrWns~lKK 63 (921)
..++|++||+|||+.|+++|++||.++|..|++.+ +|||++||++| |+.++|.
T Consensus 27 ~rr~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~~~~RT~vdlKdR--------Wrnllk~ 83 (122)
T 2roh_A 27 QRRIRRPFTVAEVELLVEAVEHLGTGRWRDVKFRAFENVHHRTYVDLKDK--------WKTLVHT 83 (122)
T ss_dssp CCCCCCCCCHHHHHHHHHHHHHHSSSCHHHHHHHHHSSSCCCCHHHHHHH--------HHHHHHH
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHCCCChHHHHHHhccccCCCCHHHHHHH--------HHHHHhh
Confidence 45789999999999999999999999999999974 89966666555 6666553
No 34
>1x58_A Hypothetical protein 4930532D21RIK; MUS musculus adult MALE testis cDNA, riken FULL-length enriched library, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1
Probab=98.83 E-value=1.9e-09 Score=91.81 Aligned_cols=51 Identities=16% Similarity=0.309 Sum_probs=45.9
Q ss_pred cCcCCCCCHHHHHHHHHHHHHhCCCChHHHh---hhCCCCCccccccCCchhhhhhCcHHHHh
Q 047353 4 LSANCHICNQEDEIIIELVNKYGPKKWSTIA---QHLPGRIGKQCRERTDNAIKNHWNSSVKK 63 (921)
Q Consensus 4 ~~KKG~WTpEEDe~Li~LVekyG~k~Ws~IA---k~LpGRTgKQCReRTDNaIKNrWns~lKK 63 (921)
...|.+||+|||+.|++.|++||. +|..|+ .++++| |+..||++|+.++|+
T Consensus 5 ~~~r~~WT~EE~~~L~~gV~k~G~-~W~~I~~~y~f~~~R--------T~VdLKdk~r~L~k~ 58 (62)
T 1x58_A 5 SSGRKDFTKEEVNYLFHGVKTMGN-HWNSILWSFPFQKGR--------RAVDLAHKYHRLISG 58 (62)
T ss_dssp CCCSSSCCHHHHHHHHHHHHHHCS-CHHHHHHHSCCCTTC--------CHHHHHHHHHHHHTC
T ss_pred CCCCCCCCHHHHHHHHHHHHHHhH-hHHHHHHhCCCccCc--------ccchHHHHHHHHHhc
Confidence 457899999999999999999998 999999 577899 889999999987664
No 35
>2cjj_A Radialis; plant development, DNA-binding protein, MYB transcription FA DNA-binding, nuclear protein, floral asymmetry; 1.9A {Antirrhinum majus} SCOP: a.4.1.3
Probab=98.68 E-value=9.6e-09 Score=93.35 Aligned_cols=51 Identities=20% Similarity=0.477 Sum_probs=41.0
Q ss_pred CcCCCCCHHHHHHHHHHHHHhC---CCChHHHhhhCCCCCccccccCCchhhhhhCcHHHHh
Q 047353 5 SANCHICNQEDEIIIELVNKYG---PKKWSTIAQHLPGRIGKQCRERTDNAIKNHWNSSVKK 63 (921)
Q Consensus 5 ~KKG~WTpEEDe~Li~LVekyG---~k~Ws~IAk~LpGRTgKQCReRTDNaIKNrWns~lKK 63 (921)
..+++||+|||++|.+++++|| +.+|.+||++|||||+ +.|++||+.+++.
T Consensus 6 ~~~~~WT~eEd~~L~~al~~~~~~~~~rW~~IA~~vpGRT~--------~q~k~ry~~l~~d 59 (93)
T 2cjj_A 6 GSGRPWSAKENKAFERALAVYDKDTPDRWANVARAVEGRTP--------EEVKKHYEILVED 59 (93)
T ss_dssp --CCSCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHSTTCCH--------HHHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcCCCCH--------HHHHHHHHHHHHH
Confidence 4578999999999999999998 4579999999999955 5555558876654
No 36
>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.46 E-value=7.4e-08 Score=80.65 Aligned_cols=45 Identities=16% Similarity=0.073 Sum_probs=39.6
Q ss_pred ccCcCCCCCHHHHHHHHHHHHHhCCCChHHHhhhCCCCCccccccC
Q 047353 3 TLSANCHICNQEDEIIIELVNKYGPKKWSTIAQHLPGRIGKQCRER 48 (921)
Q Consensus 3 ~~~KKG~WTpEEDe~Li~LVekyG~k~Ws~IAk~LpGRTgKQCReR 48 (921)
+....++||+||++++.+++.+||. +|..||.+||+|+..||+.+
T Consensus 8 ~r~~~~~WT~eE~~~F~~~~~~~gk-~w~~Ia~~l~~rt~~~~v~~ 52 (61)
T 2eqr_A 8 DRQFMNVWTDHEKEIFKDKFIQHPK-NFGLIASYLERKSVPDCVLY 52 (61)
T ss_dssp CCSCCCSCCHHHHHHHHHHHHHSTT-CHHHHHHHCTTSCHHHHHHH
T ss_pred ccccCCCCCHHHHHHHHHHHHHhCC-CHHHHHHHcCCCCHHHHHHH
Confidence 4456799999999999999999996 99999999999977777655
No 37
>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=98.21 E-value=6.7e-07 Score=77.83 Aligned_cols=50 Identities=18% Similarity=0.321 Sum_probs=41.4
Q ss_pred CcCCCCCHHHHHHHHHHHHHhC---CCChHHHhhhCCCCCccccccCCchhhhhhCcHHHHh
Q 047353 5 SANCHICNQEDEIIIELVNKYG---PKKWSTIAQHLPGRIGKQCRERTDNAIKNHWNSSVKK 63 (921)
Q Consensus 5 ~KKG~WTpEEDe~Li~LVekyG---~k~Ws~IAk~LpGRTgKQCReRTDNaIKNrWns~lKK 63 (921)
.+++.||.|||++|.+++++|+ +.+|.+||++| || |...|++||+.+++.
T Consensus 6 ~~~~~WT~eE~k~fe~al~~~p~~t~~RW~~IA~~l-gR--------t~~eV~~~y~~L~~d 58 (72)
T 2cqq_A 6 SGAPEWTEEDLSQLTRSMVKFPGGTPGRWEKIAHEL-GR--------SVTDVTTKAKQLKDS 58 (72)
T ss_dssp CCCCCCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHH-TS--------CHHHHHHHHHHHHHS
T ss_pred CCCCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHh-CC--------CHHHHHHHHHHHHHh
Confidence 4678999999999999999998 45799999998 89 556666668776544
No 38
>2iw5_B Protein corest, REST corepressor 1; oxidoreductase-transcription regulator complex, oxidoreductase/repressor complex, histone demethylase, FAD; HET: FAD; 2.57A {Homo sapiens} SCOP: a.4.1.3 PDB: 2uxn_B* 2uxx_B* 2y48_B* 2v1d_B* 2x0l_B*
Probab=97.97 E-value=2.8e-06 Score=88.04 Aligned_cols=49 Identities=16% Similarity=0.364 Sum_probs=42.0
Q ss_pred CcCCCCCHHHHHHHHHHHHHhCCCChHHHhhhCCCCCccccccCCchhhhhhCcHHHH
Q 047353 5 SANCHICNQEDEIIIELVNKYGPKKWSTIAQHLPGRIGKQCRERTDNAIKNHWNSSVK 62 (921)
Q Consensus 5 ~KKG~WTpEEDe~Li~LVekyG~k~Ws~IAk~LpGRTgKQCReRTDNaIKNrWns~lK 62 (921)
+..++||+||++++++++.+||. +|..||+.+++| |.++||++|+.+.|
T Consensus 131 k~s~~WTeEE~~lFleAl~kYGK-DW~~IAk~VgTK--------T~~QcKnfY~~~kK 179 (235)
T 2iw5_B 131 KCNARWTTEEQLLAVQAIRKYGR-DFQAISDVIGNK--------SVVQVKNFFVNYRR 179 (235)
T ss_dssp CCCSSCCHHHHHHHHHHHHHHSS-CHHHHHHHHSSC--------CHHHHHHHHHHTTT
T ss_pred ccCCCCCHHHHHHHHHHHHHHCc-CHHHHHHHcCCC--------CHHHHHHHHHHHHH
Confidence 34689999999999999999997 999999999999 66666777776543
No 39
>3hm5_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin, structural genomics consortium, SGC, activator, chromatin regulator; HET: DNA; 1.80A {Homo sapiens}
Probab=97.80 E-value=1.7e-05 Score=72.37 Aligned_cols=58 Identities=12% Similarity=0.250 Sum_probs=46.4
Q ss_pred cCCCCCHHHHHHHHHHHHHhCCCChHHHhhhCCCCCccccccCCchhhhhhCcHHHHhHhhh
Q 047353 6 ANCHICNQEDEIIIELVNKYGPKKWSTIAQHLPGRIGKQCRERTDNAIKNHWNSSVKKKLDS 67 (921)
Q Consensus 6 KKG~WTpEEDe~Li~LVekyG~k~Ws~IAk~LpGRTgKQCReRTDNaIKNrWns~lKKKL~k 67 (921)
+-+.||.||++.|++|+++||- +|..|+.++... ....|+...||+||....++-+..
T Consensus 29 ~~~~WTkEETd~Lf~L~~~fdl-RW~vI~DRy~~~---~~~~Rt~EdLK~RyY~v~~~l~~~ 86 (93)
T 3hm5_A 29 HDDAWTKAETDHLFDLSRRFDL-RFVVIHDRYDHQ---QFKKRSVEDLKERYYHICAKLANV 86 (93)
T ss_dssp CBTTBCHHHHHHHHHHHHHTTT-CHHHHHHHSCTT---TSCCCCHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHhCC-CeeeehhhhccC---CCCCCCHHHHHHHHHHHHHHHHHh
Confidence 4589999999999999999998 999999999421 011239999999999976655543
No 40
>1fex_A TRF2-interacting telomeric RAP1 protein; helix turn helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Synthetic} SCOP: a.4.1.3
Probab=97.59 E-value=1.9e-05 Score=66.29 Aligned_cols=42 Identities=17% Similarity=0.370 Sum_probs=38.5
Q ss_pred CCCCCHHHHHHHHHHHHHh--------CCCChHHHhh-hCCCCCccccccC
Q 047353 7 NCHICNQEDEIIIELVNKY--------GPKKWSTIAQ-HLPGRIGKQCRER 48 (921)
Q Consensus 7 KG~WTpEEDe~Li~LVeky--------G~k~Ws~IAk-~LpGRTgKQCReR 48 (921)
|.+||+|||++|+.+|.+| |+.-|..+++ .++++|-.+||+|
T Consensus 2 R~~FT~edD~~L~~~v~~~~~~~~~~~Gn~iwk~la~~~~~~HtwqSwRdR 52 (59)
T 1fex_A 2 RIAFTDADDVAILTYVKENARSPSSVTGNALWKAMEKSSLTQHSWQSLKDR 52 (59)
T ss_dssp CCCCCHHHHHHHHHHHHHTCCSTTTTTSSHHHHHHHHSCSSSCCSHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHhccccCCCccHHHHHHHHHhHCCCCCHHHHHHH
Confidence 6799999999999999999 6667999999 8999988888888
No 41
>1wgx_A KIAA1903 protein; MYB DNA-binding domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=97.52 E-value=3.7e-05 Score=67.44 Aligned_cols=44 Identities=16% Similarity=0.243 Sum_probs=38.0
Q ss_pred CcCCCCCHHHHHHHHHHHHHhCC---CChHHHhhhCCCCCccccccC
Q 047353 5 SANCHICNQEDEIIIELVNKYGP---KKWSTIAQHLPGRIGKQCRER 48 (921)
Q Consensus 5 ~KKG~WTpEEDe~Li~LVekyG~---k~Ws~IAk~LpGRTgKQCReR 48 (921)
.....||.||+++|..+...|+. .+|.+||..++|||..+|+.|
T Consensus 6 ~~~~~WT~eE~k~fe~ALa~~~~~tp~rWe~IA~~V~gKT~eE~~~h 52 (73)
T 1wgx_A 6 SGDKEWNEKELQKLHCAFASLPKHKPGFWSEVAAAVGSRSPEECQRK 52 (73)
T ss_dssp CSSSCCCHHHHHHHHHHHHHSCSSSSSHHHHHHHHTTTSCHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHCCCCCccHHHHHHHHcCCCCHHHHHHH
Confidence 45678999999999999999975 479999999999977777665
No 42
>1ug2_A 2610100B20RIK gene product; hypothetical protein, MYB-like DNA binding domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.4.1.3
Probab=96.93 E-value=0.00054 Score=62.59 Aligned_cols=46 Identities=17% Similarity=0.387 Sum_probs=42.4
Q ss_pred CCCHHHHHHHHHHHHHhCC--CChHHHhhhCCCCCccccccCCchhhhhhCcHHHH
Q 047353 9 HICNQEDEIIIELVNKYGP--KKWSTIAQHLPGRIGKQCRERTDNAIKNHWNSSVK 62 (921)
Q Consensus 9 ~WTpEEDe~Li~LVekyG~--k~Ws~IAk~LpGRTgKQCReRTDNaIKNrWns~lK 62 (921)
.||.|||..|+..+++-|. +.|..||+.|.+| +.|.|+||+..+|+
T Consensus 35 lWTRe~DR~IL~~cQ~~G~s~~tFa~iA~~L~Nk--------s~nqV~~RFq~Lm~ 82 (95)
T 1ug2_A 35 LWTREADRVILTMCQEQGAQPHTFSVISQQLGNK--------TPVEVSHRFRELMQ 82 (95)
T ss_dssp SSCHHHHHHHHHHHHHTTSCTTTHHHHHHHHSSC--------CHHHHHHHHHHHHH
T ss_pred EeccccCHHHHHHHHhcCCChhHHHHHHHHHccC--------CHHHHHHHHHHHHH
Confidence 5999999999999999997 5899999999999 88999999998765
No 43
>4eef_G F-HB80.4, designed hemagglutinin binding protein; immunoglobulin, fusion of virus membrane with membrane, membrane fusion, sialic acid, virion; HET: NAG BMA; 2.70A {Artificial gene}
Probab=96.89 E-value=0.00018 Score=63.46 Aligned_cols=42 Identities=14% Similarity=0.200 Sum_probs=36.0
Q ss_pred CCCCCHHHHHHHHHHHHHhCCC---ChHHHhhhCCCCCccccccC
Q 047353 7 NCHICNQEDEIIIELVNKYGPK---KWSTIAQHLPGRIGKQCRER 48 (921)
Q Consensus 7 KG~WTpEEDe~Li~LVekyG~k---~Ws~IAk~LpGRTgKQCReR 48 (921)
.+.||.||++++.++.++|+.. +|.+||+.+||||..+|+.+
T Consensus 20 s~~WT~eE~K~FE~ALa~yp~~tpdRWekIA~~VpGKT~eEVk~h 64 (74)
T 4eef_G 20 GRPWKFSENIAFEIALSFTNKDTPDRWKKVAQYVKGRTPEEVKKH 64 (74)
T ss_dssp --CCCTTHHHHHHHHTSSSCSSCCSSSTTTGGGSCSSCHHHHHGG
T ss_pred CCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHcCCCCHHHHHHH
Confidence 4589999999999999999753 89999999999977777766
No 44
>2lr8_A CAsp8-associated protein 2; structural genomics, northeast structural genomics consortiu PSI-biology, apoptosis; NMR {Homo sapiens}
Probab=95.50 E-value=0.00043 Score=60.26 Aligned_cols=45 Identities=22% Similarity=0.438 Sum_probs=39.6
Q ss_pred CCCHHHHHHHHHHHHHhCC--CChHHHhhhCCCCCccccccCCchhhhhhCcHHHH
Q 047353 9 HICNQEDEIIIELVNKYGP--KKWSTIAQHLPGRIGKQCRERTDNAIKNHWNSSVK 62 (921)
Q Consensus 9 ~WTpEEDe~Li~LVekyG~--k~Ws~IAk~LpGRTgKQCReRTDNaIKNrWns~lK 62 (921)
.||.|||..|+..+++-|. +.|..||+.| +| +.+.|+||+..+|+
T Consensus 16 lWTReeDR~IL~~cq~~G~s~~tfa~iA~~L-nk--------s~~QV~~RF~~Lm~ 62 (70)
T 2lr8_A 16 LWTRNDDRVILLECQKRGPSSKTFAYLAAKL-DK--------NPNQVSERFQQLMK 62 (70)
Confidence 6999999999999999997 5799999999 99 77888888877654
No 45
>2ebi_A DNA binding protein GT-1; DNA-binding domain, phosphorylation; HET: DNA; NMR {Arabidopsis thaliana} PDB: 2jmw_A*
Probab=96.00 E-value=0.00089 Score=58.87 Aligned_cols=44 Identities=14% Similarity=0.293 Sum_probs=36.3
Q ss_pred CcCCCCCHHHHHHHHHHHHHhCC---------CChHHHhhhCC----CCCccccccC
Q 047353 5 SANCHICNQEDEIIIELVNKYGP---------KKWSTIAQHLP----GRIGKQCRER 48 (921)
Q Consensus 5 ~KKG~WTpEEDe~Li~LVekyG~---------k~Ws~IAk~Lp----GRTgKQCReR 48 (921)
+|...||.+|-..|+++...... ..|..||..|. .|++.||+.+
T Consensus 2 kR~~~Wt~~Et~~Li~~~~e~~~~f~~~~~~~~~W~~Ia~~m~~~G~~rs~~qC~~K 58 (86)
T 2ebi_A 2 KRAETWVQDETRSLIMFRRGMDGLFNTSKSNKHLWEQISSKMREKGFDRSPDMCTDK 58 (86)
T ss_dssp CCSCCCCHHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHCCCCHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 57899999999999999975221 14999999986 7988888888
No 46
>4a69_C Nuclear receptor corepressor 2; transcription, hydrolase; HET: I0P; 2.06A {Homo sapiens} PDB: 1xc5_A
Probab=95.84 E-value=0.0058 Score=55.49 Aligned_cols=40 Identities=20% Similarity=0.153 Sum_probs=36.6
Q ss_pred CCCCCHHHHHHHHHHHHHhCCCChHHHhhhCCCCCcccccc
Q 047353 7 NCHICNQEDEIIIELVNKYGPKKWSTIAQHLPGRIGKQCRE 47 (921)
Q Consensus 7 KG~WTpEEDe~Li~LVekyG~k~Ws~IAk~LpGRTgKQCRe 47 (921)
...||+||-++..+...+||. +|.+||+.|++|+..||-+
T Consensus 43 ~~~WT~eE~~~F~~~~~~~gK-~F~~Ia~~l~~Kt~~~cV~ 82 (94)
T 4a69_C 43 MNMWSEQEKETFREKFMQHPK-NFGLIASFLERKTVAECVL 82 (94)
T ss_dssp TCCCCHHHHHHHHHHHHHSTT-CHHHHHHTCTTCCHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHcCC-CHHHHHHHcCCCCHHHHHH
Confidence 478999999999999999997 9999999999998887764
No 47
>2yqk_A Arginine-glutamic acid dipeptide repeats protein; structure genomics, SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=95.84 E-value=0.007 Score=51.08 Aligned_cols=41 Identities=15% Similarity=0.211 Sum_probs=35.4
Q ss_pred CcCCCCCHHHHHHHHHHHHHhCCCChHHHhh-hCCCCCccccc
Q 047353 5 SANCHICNQEDEIIIELVNKYGPKKWSTIAQ-HLPGRIGKQCR 46 (921)
Q Consensus 5 ~KKG~WTpEEDe~Li~LVekyG~k~Ws~IAk-~LpGRTgKQCR 46 (921)
.+...||+||=++-.+.+.+||. +|..|++ .+++|+..||.
T Consensus 7 ~~~~~WT~eE~~~Fe~~l~~yGK-df~~I~~~~v~~Kt~~~~v 48 (63)
T 2yqk_A 7 GIEKCWTEDEVKRFVKGLRQYGK-NFFRIRKELLPNKETGELI 48 (63)
T ss_dssp CCCCSCCHHHHHHHHHHHHHTCS-CHHHHHHHSCTTSCHHHHH
T ss_pred cCCCCcCHHHHHHHHHHHHHhCc-cHHHHHHHHcCCCcHHHHH
Confidence 45679999999999999999998 9999999 59999665553
No 48
>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B*
Probab=95.73 E-value=0.0047 Score=70.07 Aligned_cols=42 Identities=17% Similarity=0.336 Sum_probs=38.6
Q ss_pred cCCCCCHHHHHHHHHHHHHhCCCChHHHhhhCCCCCccccccC
Q 047353 6 ANCHICNQEDEIIIELVNKYGPKKWSTIAQHLPGRIGKQCRER 48 (921)
Q Consensus 6 KKG~WTpEEDe~Li~LVekyG~k~Ws~IAk~LpGRTgKQCReR 48 (921)
...+||.||-+++++.+.+||. +|..||..++.|+..|||..
T Consensus 379 ~~~~WT~eE~~~f~~al~~yGk-dw~~IA~~VgTKT~~Qvk~f 420 (482)
T 2xag_B 379 CNARWTTEEQLLAVQAIRKYGR-DFQAISDVIGNKSVVQVKNF 420 (482)
T ss_dssp CCSCCCHHHHHHHHHHHHHHTT-CHHHHHHHHSSCCHHHHHHH
T ss_pred cCCCCCHHHHHHHHHHHHHHCc-CHHHHHHHhCCCCHHHHHHH
Confidence 4689999999999999999997 99999999999988888765
No 49
>4iej_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin regulator, repressor, structural joint center for structural genomics; HET: DNA; 1.45A {Homo sapiens} PDB: 3hm5_A*
Probab=95.57 E-value=0.012 Score=53.88 Aligned_cols=57 Identities=11% Similarity=0.233 Sum_probs=45.9
Q ss_pred cCCCCCHHHHHHHHHHHHHhCCCChHHHhhhCCCCCccccccCCchhhhhhCcHHHHhHhh
Q 047353 6 ANCHICNQEDEIIIELVNKYGPKKWSTIAQHLPGRIGKQCRERTDNAIKNHWNSSVKKKLD 66 (921)
Q Consensus 6 KKG~WTpEEDe~Li~LVekyG~k~Ws~IAk~LpGRTgKQCReRTDNaIKNrWns~lKKKL~ 66 (921)
+-..||.||...|+.|+++|+- +|..|+.+..... =..|+-..||.||....++-++
T Consensus 29 ~~~~WT~eETd~LfdLc~~fdl-Rw~vI~DRy~~~~---~~~RtvEdLK~RYY~V~~~l~~ 85 (93)
T 4iej_A 29 HDDAWTKAETDHLFDLSRRFDL-RFVVIHDRYDHQQ---FKKRSVEDLKERYYHICAKLAN 85 (93)
T ss_dssp CBTTBCHHHHHHHHHHHHHTTT-CHHHHHHHCCTTT---SCCCCHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHcCC-CeEEEeeccccCC---CCCCCHHHHHHHHHHHHHHHHH
Confidence 4578999999999999999998 9999999975321 1245999999999986665543
No 50
>2crg_A Metastasis associated protein MTA3; transcription factor, helix turn helix, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.3
Probab=94.70 E-value=0.028 Score=48.48 Aligned_cols=41 Identities=24% Similarity=0.258 Sum_probs=34.8
Q ss_pred CcCCCCCHHHHHHHHHHHHHhCCCChHHHhh-hCCCCCccccc
Q 047353 5 SANCHICNQEDEIIIELVNKYGPKKWSTIAQ-HLPGRIGKQCR 46 (921)
Q Consensus 5 ~KKG~WTpEEDe~Li~LVekyG~k~Ws~IAk-~LpGRTgKQCR 46 (921)
.....||+||=++-.+.+.+||. +|..|++ .|++|+..||.
T Consensus 6 ~~~~~WT~eE~~~Fe~~l~~yGK-df~~I~~~~v~~Kt~~~~v 47 (70)
T 2crg_A 6 SGMEEWSASEACLFEEALEKYGK-DFNDIRQDFLPWKSLTSII 47 (70)
T ss_dssp CSSCCCCHHHHHHHHHHHHHTCS-CHHHHHHTTCSSSCHHHHH
T ss_pred cCCCCCCHHHHHHHHHHHHHhCc-cHHHHHHHHcCCCCHHHHH
Confidence 44578999999999999999998 9999999 59999554443
No 51
>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A
Probab=92.60 E-value=0.077 Score=55.81 Aligned_cols=28 Identities=14% Similarity=0.223 Sum_probs=24.9
Q ss_pred ChHHHhhhCCCCCccccccCCchhhhhhCcHHHHhH
Q 047353 29 KWSTIAQHLPGRIGKQCRERTDNAIKNHWNSSVKKK 64 (921)
Q Consensus 29 ~Ws~IAk~LpGRTgKQCReRTDNaIKNrWns~lKKK 64 (921)
.|..||+.+|+| |++++|+||+..+++.
T Consensus 173 ~fk~ia~~~P~H--------T~~SWRdRyrKfl~~~ 200 (246)
T 1ign_A 173 FFKHFAEEHAAH--------TENAWRDRFRKFLLAY 200 (246)
T ss_dssp HHHHHHHHTTTS--------CHHHHHHHHHHTHHHH
T ss_pred HHHHHHHHCCCC--------ChhhHHHHHHHHHhhc
Confidence 699999999999 8999999999877654
No 52
>4b4c_A Chromodomain-helicase-DNA-binding protein 1; chromatin-remodeling, histone acetylation COMP chromatin regulation, transcription; 1.62A {Homo sapiens}
Probab=87.87 E-value=0.32 Score=48.40 Aligned_cols=29 Identities=17% Similarity=0.361 Sum_probs=26.4
Q ss_pred CCCCHHHHHHHHHHHHHhCCCChHHHhhh
Q 047353 8 CHICNQEDEIIIELVNKYGPKKWSTIAQH 36 (921)
Q Consensus 8 G~WTpEEDe~Li~LVekyG~k~Ws~IAk~ 36 (921)
..||.+||..|+..|.+||.++|..|-..
T Consensus 135 ~~W~~~~D~~LL~Gi~k~G~g~w~~Ir~D 163 (211)
T 4b4c_A 135 IDWGKEDDSNLLIGIYEYGYGSWEMIKMD 163 (211)
T ss_dssp SCCCHHHHHHHHHHHHHHCTTCHHHHHHC
T ss_pred CCccHHHHHHHHHHHHHHCcCcHHHHHhC
Confidence 35999999999999999999999999764
No 53
>2xb0_X Chromo domain-containing protein 1; hydrolase, DNA-binding protein, transcription, chromatin REG; HET: GOL; 2.00A {Saccharomyces cerevisiae} PDB: 3ted_A
Probab=84.63 E-value=0.59 Score=49.70 Aligned_cols=27 Identities=33% Similarity=0.538 Sum_probs=25.3
Q ss_pred CCCHHHHHHHHHHHHHhCCCChHHHhh
Q 047353 9 HICNQEDEIIIELVNKYGPKKWSTIAQ 35 (921)
Q Consensus 9 ~WTpEEDe~Li~LVekyG~k~Ws~IAk 35 (921)
.|+.+||..|+.-|.+||.++|..|..
T Consensus 170 ~W~~~dD~~LLvGIykyGyG~We~Ir~ 196 (270)
T 2xb0_X 170 NWTKEEDEKLLIGVFKYGYGSWTQIRD 196 (270)
T ss_dssp CCCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred CcChHHHHHHHHHHHHHcCCcHHHHhc
Confidence 499999999999999999999999964
No 54
>1ofc_X ISWI protein; nuclear protein, chromatin remodeling factor, ATPase, SANT domain, nucleosome recognition; HET: GLC G4D; 1.9A {Drosophila melanogaster} SCOP: a.4.1.3 a.4.1.13 a.187.1.1 PDB: 2nog_A
Probab=81.48 E-value=0.78 Score=49.62 Aligned_cols=58 Identities=14% Similarity=0.207 Sum_probs=41.2
Q ss_pred cCCCCCHHHHHHHHHHHHHhCC---CChHHHhhhCC----CCCccccccCCchhhhhhCcHHHHh
Q 047353 6 ANCHICNQEDEIIIELVNKYGP---KKWSTIAQHLP----GRIGKQCRERTDNAIKNHWNSSVKK 63 (921)
Q Consensus 6 KKG~WTpEEDe~Li~LVekyG~---k~Ws~IAk~Lp----GRTgKQCReRTDNaIKNrWns~lKK 63 (921)
++..||.|||..|+-++.+||. +.|..|...+. -|=+-=.+.||...|..|-+.+++-
T Consensus 211 k~k~yteeEDRfLL~~l~k~G~~~~g~we~Ir~~Ir~~p~FrFDwf~kSRTp~el~rRc~tLi~~ 275 (304)
T 1ofc_X 211 KGKNYTEIEDRFLVCMLHKLGFDKENVYEELRAAIRASPQFRFDWFIKSRTALELQRRCNTLITL 275 (304)
T ss_dssp CCSSCCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHCGGGTTCHHHHTCCHHHHHHHHHHHHHH
T ss_pred CCCccCHHHHHHHHHHHHHhcCCCcchHHHHHHHHHhCcchhhhHHHhcCCHHHHHHHHHHHHHH
Confidence 5678999999999999999999 89999974322 1222222223777777777776653
No 55
>1ofc_X ISWI protein; nuclear protein, chromatin remodeling factor, ATPase, SANT domain, nucleosome recognition; HET: GLC G4D; 1.9A {Drosophila melanogaster} SCOP: a.4.1.3 a.4.1.13 a.187.1.1 PDB: 2nog_A
Probab=79.16 E-value=1.8 Score=46.83 Aligned_cols=41 Identities=20% Similarity=0.309 Sum_probs=36.1
Q ss_pred CCCCHHHHHHHHHHHHHhCCCChHHHhhhCCCCCccccccCCchhhhhh
Q 047353 8 CHICNQEDEIIIELVNKYGPKKWSTIAQHLPGRIGKQCRERTDNAIKNH 56 (921)
Q Consensus 8 G~WTpEEDe~Li~LVekyG~k~Ws~IAk~LpGRTgKQCReRTDNaIKNr 56 (921)
+.||..+....+.++.+||..+|..||..|+|. |...|+.+
T Consensus 111 ~~W~rrdf~~Fi~a~~kyGr~~~~~IA~ev~~K--------t~eEV~~Y 151 (304)
T 1ofc_X 111 TAWTKRDFNQFIKANEKYGRDDIDNIAKDVEGK--------TPEEVIEY 151 (304)
T ss_dssp TTCCHHHHHHHHHHHHHHCTTCHHHHTTSSTTC--------CHHHHHHH
T ss_pred cccCHHHHHHHHHHHHHhCHHHHHHHHHHhcCC--------CHHHHHHH
Confidence 579999999999999999999999999999998 55555544
No 56
>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B*
Probab=73.02 E-value=0.71 Score=52.66 Aligned_cols=40 Identities=13% Similarity=0.083 Sum_probs=0.0
Q ss_pred CCCCHHHHHHHHHHHHHhCCCChHHHhhhCCCCCccccccC
Q 047353 8 CHICNQEDEIIIELVNKYGPKKWSTIAQHLPGRIGKQCRER 48 (921)
Q Consensus 8 G~WTpEEDe~Li~LVekyG~k~Ws~IAk~LpGRTgKQCReR 48 (921)
-.||++|-.+..+.+.+||. +|..|+++||+|+-.+|-.-
T Consensus 190 d~WT~eE~~lFe~al~~yGK-dF~~I~~~lp~Ksv~e~V~y 229 (482)
T 2xag_B 190 DEWTVEDKVLFEQAFSFHGK-TFHRIQQMLPDKSIASLVKF 229 (482)
T ss_dssp -----------------------------------------
T ss_pred cccCHHHHHHHHHHHHHcCc-cHHHHHHHcCCCCHHHHHHH
Confidence 37999999999999999998 99999999999988887665
No 57
>1irz_A ARR10-B; helix-turn-helix, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.11
Probab=71.77 E-value=4.7 Score=34.72 Aligned_cols=47 Identities=11% Similarity=0.107 Sum_probs=37.2
Q ss_pred cCcCCCCCHHHHHHHHHHHHHhCCC--ChHHHhhhCC--CCCccccccCCchhhhhhCc
Q 047353 4 LSANCHICNQEDEIIIELVNKYGPK--KWSTIAQHLP--GRIGKQCRERTDNAIKNHWN 58 (921)
Q Consensus 4 ~~KKG~WTpEEDe~Li~LVekyG~k--~Ws~IAk~Lp--GRTgKQCReRTDNaIKNrWn 58 (921)
.+.+-.||+|.-+.-+++|+++|.. .|..|.+.|. |. |-..||.|+.
T Consensus 4 ~k~r~~WT~elH~~Fv~Av~~LG~~~AtPk~Il~~M~v~gL--------T~~~VkSHLQ 54 (64)
T 1irz_A 4 KKPRVLWTHELHNKFLAAVDHLGVERAVPKKILDLMNVDKL--------TRENVASHLQ 54 (64)
T ss_dssp CCSSCSSCHHHHHHHHHHHHHHCTTTCCHHHHHHHHCCTTC--------CHHHHHHHHH
T ss_pred CCCCCcCCHHHHHHHHHHHHHhCCCCCCcHHHHHHcCCCCC--------CHHHHHHHHH
Confidence 4677899999999999999999953 3889999885 66 5566666543
No 58
>2y9y_A Imitation switch protein 1 (DEL_ATPase); transcription, nuclear protein complex, chromatin remodeling nucleosome remodeling; 3.25A {Saccharomyces cerevisiae} PDB: 2y9z_A
Probab=71.52 E-value=2.2 Score=47.46 Aligned_cols=62 Identities=16% Similarity=0.208 Sum_probs=44.9
Q ss_pred cCCCCCHHHHHHHHHHHHHhCC---CChHHHhhhCC----CCCccccccCCchhhhhhCcHHHHhHhhh
Q 047353 6 ANCHICNQEDEIIIELVNKYGP---KKWSTIAQHLP----GRIGKQCRERTDNAIKNHWNSSVKKKLDS 67 (921)
Q Consensus 6 KKG~WTpEEDe~Li~LVekyG~---k~Ws~IAk~Lp----GRTgKQCReRTDNaIKNrWns~lKKKL~k 67 (921)
++..||.|||..|+-++.+||- +.|..|-..+. =|=+==.+.||...|..|.+.+|+--.+.
T Consensus 227 k~k~yteeEDRfLL~~l~k~G~~~~g~we~Ir~~Ir~~p~FrFDwF~kSRT~~EL~rRc~tLi~~IeKE 295 (374)
T 2y9y_A 227 NKRTYSEEEDRFILLMLFKYGLDRDDVYELVRDEIRDCPLFELDFYFRSRTPVELARRGNTLLQCLEKE 295 (374)
T ss_dssp SCCCSCHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHCSGGGSCHHHHTCCHHHHHHHHHHHHHHHHTT
T ss_pred CCCccCHHHHHHHHHHHHHhccCCCChHHHHHHHHHhCcchhhhHHHhcCCHHHHHHHHHHHHHHHHHH
Confidence 5668999999999999999999 89999965532 12222233348888888888877644433
No 59
>2juh_A Telomere binding protein TBP1; helix, nucleus, nuclear protein; NMR {Nicotiana glutinosa}
Probab=56.57 E-value=3.3 Score=39.49 Aligned_cols=27 Identities=0% Similarity=-0.049 Sum_probs=24.1
Q ss_pred CcCC-CCCHHHHHHHHHHHHHhCCCChHH
Q 047353 5 SANC-HICNQEDEIIIELVNKYGPKKWST 32 (921)
Q Consensus 5 ~KKG-~WTpEEDe~Li~LVekyG~k~Ws~ 32 (921)
.++| +|++||+.+|+.++..+|+ +|.+
T Consensus 76 ~krg~~~p~e~~~rv~~~h~~~gn-~~~~ 103 (121)
T 2juh_A 76 QRRGEPVPQDLLDRVLAAHAYWSQ-QQGK 103 (121)
T ss_dssp TCCCSCCCHHHHHHHHHHHHHHHH-HHCC
T ss_pred ccCCCCCCHHHHHHHHHHHHHHcc-chhc
Confidence 4567 9999999999999999998 8876
No 60
>4b4c_A Chromodomain-helicase-DNA-binding protein 1; chromatin-remodeling, histone acetylation COMP chromatin regulation, transcription; 1.62A {Homo sapiens}
Probab=54.96 E-value=7.1 Score=38.73 Aligned_cols=51 Identities=14% Similarity=0.175 Sum_probs=39.2
Q ss_pred cCcCCCCCHHHHHHHHHHHHHhC--CCChHHHhhh--CCCCCccccccCCchhhhhhCcHHHH
Q 047353 4 LSANCHICNQEDEIIIELVNKYG--PKKWSTIAQH--LPGRIGKQCRERTDNAIKNHWNSSVK 62 (921)
Q Consensus 4 ~~KKG~WTpEEDe~Li~LVekyG--~k~Ws~IAk~--LpGRTgKQCReRTDNaIKNrWns~lK 62 (921)
......||..|=..|+..+.+|| ..+|..|++. |.++ +...|+.+....+.
T Consensus 4 ~~~~~~~t~~E~r~fira~~kfG~~~~r~~~I~~da~L~~K--------s~~~v~~y~~~f~~ 58 (211)
T 4b4c_A 4 RENIKGFSDAEIRRFIKSYKKFGGPLERLDAIARDAELVDK--------SETDLRRLGELVHN 58 (211)
T ss_dssp ----CCSCHHHHHHHHHHHTTCSSGGGCHHHHHHHTTCTTS--------CHHHHHHHHHHHHH
T ss_pred cccCCCCCHHHHHHHHHHHHHHCCchhHHHHHHHHhccCCC--------CHHHHHHHHHHHHH
Confidence 34567899999999999999999 5799999865 6788 77888876665443
No 61
>3au4_B Netrin receptor DCC; protein-protein complex, motor protein cargo transportation, protein-apoptosis complex; 1.90A {Homo sapiens} PDB: 3pzd_B
Probab=34.55 E-value=9.2 Score=32.85 Aligned_cols=15 Identities=53% Similarity=0.718 Sum_probs=11.1
Q ss_pred hHHHHHhhhhhHHHH
Q 047353 818 LGLMKQLSEHTAAAY 832 (921)
Q Consensus 818 iGLmKqise~tAaa~ 832 (921)
=||||+||.-|+.+|
T Consensus 49 EGLMkdLnAIt~~ef 63 (63)
T 3au4_B 49 EGLMKQLNAITGSAF 63 (63)
T ss_dssp HHHHHHHHHHHTC--
T ss_pred HHHHHHHHHHhhccC
Confidence 499999999887665
Done!