BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 047355
(312 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3MKQ|A Chain A, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
pdb|3MKQ|C Chain C, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
pdb|3MKQ|E Chain E, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
Length = 814
Score = 365 bits (938), Expect = e-101, Method: Compositional matrix adjust.
Identities = 167/302 (55%), Positives = 223/302 (73%), Gaps = 3/302 (0%)
Query: 5 LELQIEKEFIQKSDRVKSVDFHPTQPWVLASLYSGTVCIWNYHSQTTEKSVKVTDSPVRT 64
++L I+K F +SDRVK +DFHPT+PWVL +LYSG V IWNY +Q +S++VT++PVR
Sbjct: 1 MKLDIKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVEIWNYETQVEVRSIQVTETPVRA 60
Query: 65 AKFVAREHWIVCGSDDKFIRVFDYNTMASVKEFEAHEDYIRSLAVHPTFPFVLTASDDKL 124
KF+AR++WI+ GSDD IRVF+YNT V +FEAH DYIRS+AVHPT P+VL+ SDD
Sbjct: 61 GKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLT 120
Query: 125 IKLWDWEKNWECTQTFEGHSHYVMQSAFNPKDLNTFASASLDGTIQIWNMDSSAAKFTL- 183
+KLW+WE NW QTFEGH H+VM AFNPKD +TFAS LD T+++W++ S FTL
Sbjct: 121 VKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLT 180
Query: 184 DAHEKGINCIDYFITSDKVYLITGSDDFTVKVWDYETKTCVQILEGHTNNVTAVCFHPEL 243
E+G+N +DY+ DK Y+IT SDD T+K+WDY+TK+CV LEGH +NV+ FHP L
Sbjct: 181 TGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTL 240
Query: 244 RIIITASEDGTILIWNATTFRLQNTLSSGLERVWSIG-YKKG-SNQVAFGCDNGTLIVKI 301
III+ SEDGT+ IWN++T++++ TL+ GLER W I + G N +A G DNG ++ +
Sbjct: 241 PIIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIATHPTGRKNYIASGFDNGFTVLSL 300
Query: 302 GN 303
GN
Sbjct: 301 GN 302
>pdb|2YNP|A Chain A, Yeast Betaprime Cop 1-604 With Ktktn Motif
Length = 604
Score = 364 bits (934), Expect = e-101, Method: Compositional matrix adjust.
Identities = 166/302 (54%), Positives = 223/302 (73%), Gaps = 3/302 (0%)
Query: 5 LELQIEKEFIQKSDRVKSVDFHPTQPWVLASLYSGTVCIWNYHSQTTEKSVKVTDSPVRT 64
++L I+K F +SDRVK +DFHPT+PWVL +LYSG V +WNY +Q +S++VT++PVR
Sbjct: 1 MKLDIKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRA 60
Query: 65 AKFVAREHWIVCGSDDKFIRVFDYNTMASVKEFEAHEDYIRSLAVHPTFPFVLTASDDKL 124
KF+AR++WI+ GSDD IRVF+YNT V +FEAH DYIRS+AVHPT P+VL+ SDD
Sbjct: 61 GKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLT 120
Query: 125 IKLWDWEKNWECTQTFEGHSHYVMQSAFNPKDLNTFASASLDGTIQIWNMDSSAAKFTL- 183
+KLW+WE NW QTFEGH H+VM AFNPKD +TFAS LD T+++W++ S FTL
Sbjct: 121 VKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLT 180
Query: 184 DAHEKGINCIDYFITSDKVYLITGSDDFTVKVWDYETKTCVQILEGHTNNVTAVCFHPEL 243
E+G+N +DY+ DK Y+IT SDD T+K+WDY+TK+CV LEGH +NV+ FHP L
Sbjct: 181 TGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTL 240
Query: 244 RIIITASEDGTILIWNATTFRLQNTLSSGLERVWSIG-YKKG-SNQVAFGCDNGTLIVKI 301
III+ SEDGT+ IWN++T++++ TL+ GLER W I + G N +A G DNG ++ +
Sbjct: 241 PIIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIATHPTGRKNYIASGFDNGFTVLSL 300
Query: 302 GN 303
GN
Sbjct: 301 GN 302
>pdb|2YNO|A Chain A, Yeast Betaprime Cop 1-304h6
pdb|2YNO|B Chain B, Yeast Betaprime Cop 1-304h6
Length = 310
Score = 362 bits (930), Expect = e-100, Method: Compositional matrix adjust.
Identities = 166/302 (54%), Positives = 223/302 (73%), Gaps = 3/302 (0%)
Query: 5 LELQIEKEFIQKSDRVKSVDFHPTQPWVLASLYSGTVCIWNYHSQTTEKSVKVTDSPVRT 64
++L I+K F +SDRVK +DFHPT+PWVL +LYSG V +WNY +Q +S++VT++PVR
Sbjct: 1 MKLDIKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRA 60
Query: 65 AKFVAREHWIVCGSDDKFIRVFDYNTMASVKEFEAHEDYIRSLAVHPTFPFVLTASDDKL 124
KF+AR++WI+ GSDD IRVF+YNT V +FEAH DYIRS+AVHPT P+VL+ SDD
Sbjct: 61 GKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLT 120
Query: 125 IKLWDWEKNWECTQTFEGHSHYVMQSAFNPKDLNTFASASLDGTIQIWNMDSSAAKFTL- 183
+KLW+WE NW QTFEGH H+VM AFNPKD +TFAS LD T+++W++ S FTL
Sbjct: 121 VKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLT 180
Query: 184 DAHEKGINCIDYFITSDKVYLITGSDDFTVKVWDYETKTCVQILEGHTNNVTAVCFHPEL 243
E+G+N +DY+ DK Y+IT SDD T+K+WDY+TK+CV LEGH +NV+ FHP L
Sbjct: 181 TGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTL 240
Query: 244 RIIITASEDGTILIWNATTFRLQNTLSSGLERVWSIG-YKKG-SNQVAFGCDNGTLIVKI 301
III+ SEDGT+ IWN++T++++ TL+ GLER W I + G N +A G DNG ++ +
Sbjct: 241 PIIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIATHPTGRKNYIASGFDNGFTVLSL 300
Query: 302 GN 303
GN
Sbjct: 301 GN 302
>pdb|2YNN|A Chain A, Yeast Betaprime Cop 1-304 With Ktktn Motif
Length = 304
Score = 362 bits (930), Expect = e-100, Method: Compositional matrix adjust.
Identities = 166/302 (54%), Positives = 223/302 (73%), Gaps = 3/302 (0%)
Query: 5 LELQIEKEFIQKSDRVKSVDFHPTQPWVLASLYSGTVCIWNYHSQTTEKSVKVTDSPVRT 64
++L I+K F +SDRVK +DFHPT+PWVL +LYSG V +WNY +Q +S++VT++PVR
Sbjct: 1 MKLDIKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRA 60
Query: 65 AKFVAREHWIVCGSDDKFIRVFDYNTMASVKEFEAHEDYIRSLAVHPTFPFVLTASDDKL 124
KF+AR++WI+ GSDD IRVF+YNT V +FEAH DYIRS+AVHPT P+VL+ SDD
Sbjct: 61 GKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLT 120
Query: 125 IKLWDWEKNWECTQTFEGHSHYVMQSAFNPKDLNTFASASLDGTIQIWNMDSSAAKFTL- 183
+KLW+WE NW QTFEGH H+VM AFNPKD +TFAS LD T+++W++ S FTL
Sbjct: 121 VKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLT 180
Query: 184 DAHEKGINCIDYFITSDKVYLITGSDDFTVKVWDYETKTCVQILEGHTNNVTAVCFHPEL 243
E+G+N +DY+ DK Y+IT SDD T+K+WDY+TK+CV LEGH +NV+ FHP L
Sbjct: 181 TGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTL 240
Query: 244 RIIITASEDGTILIWNATTFRLQNTLSSGLERVWSIG-YKKG-SNQVAFGCDNGTLIVKI 301
III+ SEDGT+ IWN++T++++ TL+ GLER W I + G N +A G DNG ++ +
Sbjct: 241 PIIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIATHPTGRKNYIASGFDNGFTVLSL 300
Query: 302 GN 303
GN
Sbjct: 301 GN 302
>pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure
pdb|2YMU|B Chain B, Structure Of A Highly Repetitive Propeller Structure
Length = 577
Score = 130 bits (326), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 91/299 (30%), Positives = 148/299 (49%), Gaps = 12/299 (4%)
Query: 8 QIEKEFIQKSDRVKSVDFHPTQPWVLASLYSGTVCIWNYHSQTTEKSVKVTDSPVRTAKF 67
Q+ + S V V F P + ++ TV +WN + Q + ++ S VR F
Sbjct: 48 QLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQLLQ-TLTGHSSSVRGVAF 106
Query: 68 VAREHWIVCGSDDKFIRVFDYNTMASVKEFEAHEDYIRSLAVHPTFPFVLTASDDKLIKL 127
I SDDK +++++ N ++ H + +A P + +ASDDK +KL
Sbjct: 107 SPDGQTIASASDDKTVKLWNRNGQL-LQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKL 165
Query: 128 WDWEKNWECTQTFEGHSHYVMQSAFNPKDLNTFASASLDGTIQIWNMDSSAAKFTLDAHE 187
W+ +N + QT GHS V AF+P D T ASAS D T+++WN + + TL H
Sbjct: 166 WN--RNGQLLQTLTGHSSSVWGVAFSP-DGQTIASASDDKTVKLWNRNGQLLQ-TLTGHS 221
Query: 188 KGINCIDYFITSDKVYLITGSDDFTVKVWDYETKTCVQILEGHTNNVTAVCFHPELRIII 247
+ + + + D + + SDD TVK+W+ + +Q L GH+++V V F P+ + I
Sbjct: 222 SSVRGVAF--SPDGQTIASASDDKTVKLWNRNGQ-LLQTLTGHSSSVNGVAFRPDGQTIA 278
Query: 248 TASEDGTILIWNATTFRLQNTLSSGLERVWSIGYKKGSNQVAFGCDNGTLIVKIGNSSG 306
+AS+D T+ +WN LQ TL+ VW + + +A D+ T VK+ N +G
Sbjct: 279 SASDDKTVKLWNRNGQLLQ-TLTGHSSSVWGVAFSPDGQTIASASDDKT--VKLWNRNG 334
Score = 130 bits (326), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 91/299 (30%), Positives = 148/299 (49%), Gaps = 12/299 (4%)
Query: 8 QIEKEFIQKSDRVKSVDFHPTQPWVLASLYSGTVCIWNYHSQTTEKSVKVTDSPVRTAKF 67
Q+ + S V+ V F P + ++ TV +WN + Q + ++ S V F
Sbjct: 89 QLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQ-TLTGHSSSVWGVAF 147
Query: 68 VAREHWIVCGSDDKFIRVFDYNTMASVKEFEAHEDYIRSLAVHPTFPFVLTASDDKLIKL 127
I SDDK +++++ N ++ H + +A P + +ASDDK +KL
Sbjct: 148 SPDGQTIASASDDKTVKLWNRNGQL-LQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKL 206
Query: 128 WDWEKNWECTQTFEGHSHYVMQSAFNPKDLNTFASASLDGTIQIWNMDSSAAKFTLDAHE 187
W+ +N + QT GHS V AF+P D T ASAS D T+++WN + + TL H
Sbjct: 207 WN--RNGQLLQTLTGHSSSVRGVAFSP-DGQTIASASDDKTVKLWNRNGQLLQ-TLTGHS 262
Query: 188 KGINCIDYFITSDKVYLITGSDDFTVKVWDYETKTCVQILEGHTNNVTAVCFHPELRIII 247
+N + + D + + SDD TVK+W+ + +Q L GH+++V V F P+ + I
Sbjct: 263 SSVNGVAFR--PDGQTIASASDDKTVKLWNRNGQ-LLQTLTGHSSSVWGVAFSPDGQTIA 319
Query: 248 TASEDGTILIWNATTFRLQNTLSSGLERVWSIGYKKGSNQVAFGCDNGTLIVKIGNSSG 306
+AS+D T+ +WN LQ TL+ VW + + +A D+ T VK+ N +G
Sbjct: 320 SASDDKTVKLWNRNGQHLQ-TLTGHSSSVWGVAFSPDGQTIASASDDKT--VKLWNRNG 375
Score = 129 bits (323), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 91/299 (30%), Positives = 148/299 (49%), Gaps = 12/299 (4%)
Query: 8 QIEKEFIQKSDRVKSVDFHPTQPWVLASLYSGTVCIWNYHSQTTEKSVKVTDSPVRTAKF 67
Q+ + S V V F P + ++ TV +WN + Q + ++ S VR F
Sbjct: 171 QLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQLLQ-TLTGHSSSVRGVAF 229
Query: 68 VAREHWIVCGSDDKFIRVFDYNTMASVKEFEAHEDYIRSLAVHPTFPFVLTASDDKLIKL 127
I SDDK +++++ N ++ H + +A P + +ASDDK +KL
Sbjct: 230 SPDGQTIASASDDKTVKLWNRNGQL-LQTLTGHSSSVNGVAFRPDGQTIASASDDKTVKL 288
Query: 128 WDWEKNWECTQTFEGHSHYVMQSAFNPKDLNTFASASLDGTIQIWNMDSSAAKFTLDAHE 187
W+ +N + QT GHS V AF+P D T ASAS D T+++WN + + TL H
Sbjct: 289 WN--RNGQLLQTLTGHSSSVWGVAFSP-DGQTIASASDDKTVKLWNRNGQHLQ-TLTGHS 344
Query: 188 KGINCIDYFITSDKVYLITGSDDFTVKVWDYETKTCVQILEGHTNNVTAVCFHPELRIII 247
+ + + + D + + SDD TVK+W+ + +Q L GH+++V V F P+ + I
Sbjct: 345 SSVWGVAF--SPDGQTIASASDDKTVKLWNRNGQ-LLQTLTGHSSSVRGVAFSPDGQTIA 401
Query: 248 TASEDGTILIWNATTFRLQNTLSSGLERVWSIGYKKGSNQVAFGCDNGTLIVKIGNSSG 306
+AS+D T+ +WN LQ TL+ VW + + +A D+ T VK+ N +G
Sbjct: 402 SASDDKTVKLWNRNGQLLQ-TLTGHSSSVWGVAFSPDDQTIASASDDKT--VKLWNRNG 457
Score = 126 bits (316), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 86/290 (29%), Positives = 142/290 (48%), Gaps = 10/290 (3%)
Query: 8 QIEKEFIQKSDRVKSVDFHPTQPWVLASLYSGTVCIWNYHSQTTEKSVKVTDSPVRTAKF 67
Q+ + S V V F P + ++ TV +WN + Q + ++ S V F
Sbjct: 294 QLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQHLQ-TLTGHSSSVWGVAF 352
Query: 68 VAREHWIVCGSDDKFIRVFDYNTMASVKEFEAHEDYIRSLAVHPTFPFVLTASDDKLIKL 127
I SDDK +++++ N ++ H +R +A P + +ASDDK +KL
Sbjct: 353 SPDGQTIASASDDKTVKLWNRNGQL-LQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKL 411
Query: 128 WDWEKNWECTQTFEGHSHYVMQSAFNPKDLNTFASASLDGTIQIWNMDSSAAKFTLDAHE 187
W+ +N + QT GHS V AF+P D T ASAS D T+++WN + + TL H
Sbjct: 412 WN--RNGQLLQTLTGHSSSVWGVAFSPDD-QTIASASDDKTVKLWNRNGQLLQ-TLTGHS 467
Query: 188 KGINCIDYFITSDKVYLITGSDDFTVKVWDYETKTCVQILEGHTNNVTAVCFHPELRIII 247
+ + + + D + + SDD TVK+W+ + +Q L GH+++V V F P+ + I
Sbjct: 468 SSVRGVAF--SPDGQTIASASDDKTVKLWNRNGQ-LLQTLTGHSSSVRGVAFSPDGQTIA 524
Query: 248 TASEDGTILIWNATTFRLQNTLSSGLERVWSIGYKKGSNQVAFGCDNGTL 297
+AS+D T+ +WN LQ TL+ VW + + +A + T+
Sbjct: 525 SASDDKTVKLWNRNGQLLQ-TLTGHSSSVWGVAFSPDGQTIASASSDKTV 573
Score = 124 bits (311), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 89/290 (30%), Positives = 146/290 (50%), Gaps = 12/290 (4%)
Query: 17 SDRVKSVDFHPTQPWVLASLYSGTVCIWNYHSQTTEKSVKVTDSPVRTAKFVAREHWIVC 76
S V+ V F P + ++ TV +WN + Q + ++ S V F I
Sbjct: 16 SSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQ-TLTGHSSSVWGVAFSPDGQTIAS 74
Query: 77 GSDDKFIRVFDYNTMASVKEFEAHEDYIRSLAVHPTFPFVLTASDDKLIKLWDWEKNWEC 136
SDDK +++++ N ++ H +R +A P + +ASDDK +KLW+ +N +
Sbjct: 75 ASDDKTVKLWNRNGQL-LQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWN--RNGQL 131
Query: 137 TQTFEGHSHYVMQSAFNPKDLNTFASASLDGTIQIWNMDSSAAKFTLDAHEKGINCIDYF 196
QT GHS V AF+P D T ASAS D T+++WN + + TL H + + +
Sbjct: 132 LQTLTGHSSSVWGVAFSP-DGQTIASASDDKTVKLWNRNGQLLQ-TLTGHSSSVWGVAF- 188
Query: 197 ITSDKVYLITGSDDFTVKVWDYETKTCVQILEGHTNNVTAVCFHPELRIIITASEDGTIL 256
+ D + + SDD TVK+W+ + +Q L GH+++V V F P+ + I +AS+D T+
Sbjct: 189 -SPDGQTIASASDDKTVKLWNRNGQ-LLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVK 246
Query: 257 IWNATTFRLQNTLSSGLERVWSIGYKKGSNQVAFGCDNGTLIVKIGNSSG 306
+WN LQ TL+ V + ++ +A D+ T VK+ N +G
Sbjct: 247 LWNRNGQLLQ-TLTGHSSSVNGVAFRPDGQTIASASDDKT--VKLWNRNG 293
Score = 120 bits (302), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 89/299 (29%), Positives = 146/299 (48%), Gaps = 12/299 (4%)
Query: 8 QIEKEFIQKSDRVKSVDFHPTQPWVLASLYSGTVCIWNYHSQTTEKSVKVTDSPVRTAKF 67
Q+ + S V V F P + ++ TV +WN + Q + ++ S V F
Sbjct: 253 QLLQTLTGHSSSVNGVAFRPDGQTIASASDDKTVKLWNRNGQLLQ-TLTGHSSSVWGVAF 311
Query: 68 VAREHWIVCGSDDKFIRVFDYNTMASVKEFEAHEDYIRSLAVHPTFPFVLTASDDKLIKL 127
I SDDK +++++ N ++ H + +A P + +ASDDK +KL
Sbjct: 312 SPDGQTIASASDDKTVKLWNRNGQ-HLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKL 370
Query: 128 WDWEKNWECTQTFEGHSHYVMQSAFNPKDLNTFASASLDGTIQIWNMDSSAAKFTLDAHE 187
W+ +N + QT GHS V AF+P D T ASAS D T+++WN + + TL H
Sbjct: 371 WN--RNGQLLQTLTGHSSSVRGVAFSP-DGQTIASASDDKTVKLWNRNGQLLQ-TLTGHS 426
Query: 188 KGINCIDYFITSDKVYLITGSDDFTVKVWDYETKTCVQILEGHTNNVTAVCFHPELRIII 247
+ + + + D + + SDD TVK+W+ + +Q L GH+++V V F P+ + I
Sbjct: 427 SSVWGVAF--SPDDQTIASASDDKTVKLWNRNGQ-LLQTLTGHSSSVRGVAFSPDGQTIA 483
Query: 248 TASEDGTILIWNATTFRLQNTLSSGLERVWSIGYKKGSNQVAFGCDNGTLIVKIGNSSG 306
+AS+D T+ +WN LQ TL+ V + + +A D+ T VK+ N +G
Sbjct: 484 SASDDKTVKLWNRNGQLLQ-TLTGHSSSVRGVAFSPDGQTIASASDDKT--VKLWNRNG 539
Score = 116 bits (290), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 76/216 (35%), Positives = 116/216 (53%), Gaps = 13/216 (6%)
Query: 94 VKE---FEAHEDYIRSLAVHPTFPFVLTASDDKLIKLWDWEKNWECTQTFEGHSHYVMQS 150
VKE EAH +R +A P + +ASDDK +KLW+ +N + QT GHS V
Sbjct: 6 VKERNRLEAHSSSVRGVAFSPDGQTIASASDDKTVKLWN--RNGQLLQTLTGHSSSVWGV 63
Query: 151 AFNPKDLNTFASASLDGTIQIWNMDSSAAKFTLDAHEKGINCIDYFITSDKVYLITGSDD 210
AF+P D T ASAS D T+++WN + + TL H + + + + D + + SDD
Sbjct: 64 AFSP-DGQTIASASDDKTVKLWNRNGQLLQ-TLTGHSSSVRGVAF--SPDGQTIASASDD 119
Query: 211 FTVKVWDYETKTCVQILEGHTNNVTAVCFHPELRIIITASEDGTILIWNATTFRLQNTLS 270
TVK+W+ + +Q L GH+++V V F P+ + I +AS+D T+ +WN LQ TL+
Sbjct: 120 KTVKLWNRNGQ-LLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQLLQ-TLT 177
Query: 271 SGLERVWSIGYKKGSNQVAFGCDNGTLIVKIGNSSG 306
VW + + +A D+ T VK+ N +G
Sbjct: 178 GHSSSVWGVAFSPDGQTIASASDDKT--VKLWNRNG 211
>pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|D Chain D, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|G Chain G, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|H Chain H, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|K Chain K, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|L Chain L, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|O Chain O, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|P Chain P, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|S Chain S, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|T Chain T, Paf-Ah Holoenzyme: Lis1ALFA2
Length = 410
Score = 120 bits (300), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 78/298 (26%), Positives = 140/298 (46%), Gaps = 20/298 (6%)
Query: 20 VKSVDFHPTQPWVLASLYSGTVCIWNYHSQTTEKSVKVTDSPVRTAKFVAREHWIVCGSD 79
V V FHP ++++ T+ +W+Y + E+++K V+ F + S
Sbjct: 111 VTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSA 170
Query: 80 DKFIRVFDYNTMASVKEFEAHEDYIRSLAVHPTFPFVLTASDDKLIKLWDWEKNWECTQT 139
D I+++D+ ++ H+ + S+++ P +++AS DK IK+W+ + + C +T
Sbjct: 171 DMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGY-CVKT 229
Query: 140 FEGHSHYVMQSAFNPKDLNTFASASLDGTIQIWNMDSSAAKFTLDAHEKGINCIDYFITS 199
F GH +V N +D AS S D T+++W + + K L H + CI + S
Sbjct: 230 FTGHREWVRMVRPN-QDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPES 288
Query: 200 D------------------KVYLITGSDDFTVKVWDYETKTCVQILEGHTNNVTAVCFHP 241
+L++GS D T+K+WD T C+ L GH N V V FH
Sbjct: 289 SYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHS 348
Query: 242 ELRIIITASEDGTILIWNATTFRLQNTLSSGLERVWSIGYKKGSNQVAFGCDNGTLIV 299
+ I++ ++D T+ +W+ R TL++ V S+ + K + V G + T+ V
Sbjct: 349 GGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKV 406
Score = 89.4 bits (220), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 59/268 (22%), Positives = 120/268 (44%), Gaps = 22/268 (8%)
Query: 10 EKEFIQKSDRVKSVDFHPTQPWVLASLYSGTVCIWNYHSQTTEKSVKVTDSPVRTAKFVA 69
E+ +D V+ + F + + + T+ +W++ +++ D V + +
Sbjct: 143 ERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMP 202
Query: 70 REHWIVCGSDDKFIRVFDYNTMASVKEFEAHEDYIRSLAVHPTFPFVLTASDDKLIKLWD 129
IV S DK I++++ T VK F H +++R + + + + S+D+ +++W
Sbjct: 203 NGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWV 262
Query: 130 WEKNWECTQTFEGHSHYVMQSAFNPKDLNT-------------------FASASLDGTIQ 170
EC H H V ++ P+ + S S D TI+
Sbjct: 263 VATK-ECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIK 321
Query: 171 IWNMDSSAAKFTLDAHEKGINCIDYFITSDKVYLITGSDDFTVKVWDYETKTCVQILEGH 230
+W++ + TL H+ + + S ++++ +DD T++VWDY+ K C++ L H
Sbjct: 322 MWDVSTGMCLMTLVGHDNWVRGV--LFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAH 379
Query: 231 TNNVTAVCFHPELRIIITASEDGTILIW 258
+ VT++ FH ++T S D T+ +W
Sbjct: 380 EHFVTSLDFHKTAPYVVTGSVDQTVKVW 407
Score = 80.1 bits (196), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 45/166 (27%), Positives = 82/166 (49%), Gaps = 4/166 (2%)
Query: 97 FEAHEDYIRSLAVHPTFPFVLTASDDKLIKLWDWEKNWECTQTFEGHSHYVMQSAFNPKD 156
H + + HP F +++AS+D IK+WD+E + +T +GH+ V +F+
Sbjct: 104 LSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETG-DFERTLKGHTDSVQDISFDHSG 162
Query: 157 LNTFASASLDGTIQIWNMDSSAAKFTLDAHEKGINCIDYFITSDKVYLITGSDDFTVKVW 216
AS S D TI++W+ T+ H+ ++ + D ++++ S D T+K+W
Sbjct: 163 -KLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGD--HIVSASRDKTIKMW 219
Query: 217 DYETKTCVQILEGHTNNVTAVCFHPELRIIITASEDGTILIWNATT 262
+ +T CV+ GH V V + + +I + S D T+ +W T
Sbjct: 220 EVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVAT 265
Score = 71.2 bits (173), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 48/170 (28%), Positives = 83/170 (48%), Gaps = 3/170 (1%)
Query: 140 FEGHSHYVMQSAFNPKDLNTFASASLDGTIQIWNMDSSAAKFTLDAHEKGINCIDYFITS 199
GH V + F+P + SAS D TI++W+ ++ + TL H + I F S
Sbjct: 104 LSGHRSPVTRVIFHPV-FSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDIS-FDHS 161
Query: 200 DKVYLITGSDDFTVKVWDYETKTCVQILEGHTNNVTAVCFHPELRIIITASEDGTILIWN 259
K+ L + S D T+K+WD++ C++ + GH +NV++V P I++AS D TI +W
Sbjct: 162 GKL-LASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWE 220
Query: 260 ATTFRLQNTLSSGLERVWSIGYKKGSNQVAFGCDNGTLIVKIGNSSGCDS 309
T T + E V + + +A ++ T+ V + + C +
Sbjct: 221 VQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKA 270
Score = 65.1 bits (157), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 55/218 (25%), Positives = 91/218 (41%), Gaps = 24/218 (11%)
Query: 20 VKSVDFHPTQPWVLASLYSGTVCIWNYHSQTTEKSVKVTDSPVRTAKFVAREHWIVCGSD 79
V SV P ++++ T+ +W + K+ VR + I S+
Sbjct: 195 VSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSN 254
Query: 80 DKFIRVFDYNTMASVKEFEAHEDYIRSLAVHP--------------------TFPFVLTA 119
D+ +RV+ T E H + ++ P PF+L+
Sbjct: 255 DQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSG 314
Query: 120 SDDKLIKLWDWEKNWECTQTFEGHSHYVMQSAFNPKDLNTFASASLDGTIQIWNMDSSAA 179
S DK IK+WD C T GH ++V F+ + A D T+++W+ +
Sbjct: 315 SRDKTIKMWDVSTGM-CLMTLVGHDNWVRGVLFHSGGKFILSCAD-DKTLRVWDYKNKRC 372
Query: 180 KFTLDAHEKGINCIDYFITSDKVYLITGSDDFTVKVWD 217
TL+AHE + +D+ T+ Y++TGS D TVKVW+
Sbjct: 373 MKTLNAHEHFVTSLDFHKTAP--YVVTGSVDQTVKVWE 408
>pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a)
Length = 315
Score = 101 bits (251), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 70/276 (25%), Positives = 125/276 (45%), Gaps = 12/276 (4%)
Query: 20 VKSVDFHPTQPWVLASLYSGTVCIWNYHSQTTEKSVKVTDSPVRTAKFVAREHWIVCGSD 79
V SV F P W+ AS + IW + EK++ + + + + +V SD
Sbjct: 29 VSSVKFSPNGEWLAASSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASD 88
Query: 80 DKFIRVFDYNTMASVKEFEAHEDYIRSLAVHPTFPFVLTASDDKLIKLWDWEKNWECTQT 139
DK ++++D ++ +K + H +Y+ +P +++ S D+ +++WD K +C +T
Sbjct: 89 DKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWD-VKTGKCLKT 147
Query: 140 FEGHSHYVMQSAFNPKDLNTFASASLDGTIQIWNMDSSAAKFTL-DAHEKGINCIDYFIT 198
HS V FN +D + S+S DG +IW+ S TL D ++ + + +
Sbjct: 148 LPAHSDPVSAVHFN-RDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKF--S 204
Query: 199 SDKVYLITGSDDFTVKVWDYETKTCVQILEGHTNNVTAVCFHPELRI-----IITASEDG 253
+ Y++ + D T+K+WDY C++ GH N C + I++ SED
Sbjct: 205 PNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNE--KYCIFANFSVTGGKWIVSGSEDN 262
Query: 254 TILIWNATTFRLQNTLSSGLERVWSIGYKKGSNQVA 289
+ IWN T + L + V S N +A
Sbjct: 263 LVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIA 298
Score = 85.9 bits (211), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 52/174 (29%), Positives = 94/174 (54%), Gaps = 6/174 (3%)
Query: 97 FEAHEDYIRSLAVHPTFPFVLTASDDKLIKLWD-WEKNWECTQTFEGHSHYVMQSAFNPK 155
H + S+ P ++ +S DKLIK+W ++ +E +T GH + A++
Sbjct: 22 LAGHTKAVSSVKFSPNGEWLAASSADKLIKIWGAYDGKFE--KTISGHKLGISDVAWS-S 78
Query: 156 DLNTFASASLDGTIQIWNMDSSAAKFTLDAHEKGINCIDYFITSDKVYLITGSDDFTVKV 215
D N SAS D T++IW++ S TL H + C ++ S+ +++GS D +V++
Sbjct: 79 DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSN--LIVSGSFDESVRI 136
Query: 216 WDYETKTCVQILEGHTNNVTAVCFHPELRIIITASEDGTILIWNATTFRLQNTL 269
WD +T C++ L H++ V+AV F+ + +I+++S DG IW+ + + TL
Sbjct: 137 WDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTL 190
Score = 79.0 bits (193), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 49/169 (28%), Positives = 87/169 (51%), Gaps = 13/169 (7%)
Query: 131 EKNWECTQTFEGHSHYVMQSAFNPKDLNTFASASLDGTIQIWNMDSSAAKFTLDAHEKGI 190
+ N+ T GH+ V F+P A++S D I+IW + T+ H+ GI
Sbjct: 13 KPNYALKFTLAGHTKAVSSVKFSPNG-EWLAASSADKLIKIWGAYDGKFEKTISGHKLGI 71
Query: 191 NCIDYFITSDKVYLITGSDDFTVKVWDYETKTCVQILEGHTNNVTAVCFHPELRIIITAS 250
+ D +SD L++ SDD T+K+WD + C++ L+GH+N V F+P+ +I++ S
Sbjct: 72 S--DVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGS 129
Query: 251 EDGTILIWNATTFRLQNTLSSGLERVWSIGYKKGSNQVAFGCDNGTLIV 299
D ++ IW+ T + TL + + V ++ + + +G+LIV
Sbjct: 130 FDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNR----------DGSLIV 168
Score = 64.7 bits (156), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 57/249 (22%), Positives = 98/249 (39%), Gaps = 50/249 (20%)
Query: 17 SDRVKSVDFHPTQPWVLASLYSGTVCIWNYHSQTTEKSVKVTDSPVRTAKFVAREHWIVC 76
S+ V +F+P +++ + +V IW+ + K++ PV F IV
Sbjct: 110 SNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVS 169
Query: 77 GSDDKFIRVFDYNTMASVKEF-EAHEDYIRSLAVHPTFPFVLTASDDKLIKLWDWEKNWE 135
S D R++D + +K + + + P ++L A+ D +KLWD+ K +
Sbjct: 170 SSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKG-K 228
Query: 136 CTQTFEGHSH--YVMQSAFNPKDLNTFASASLDGTIQIWNMDSSAAKFTLDAHEKGINCI 193
C +T+ GH + Y + + F+ S S D + IWN+
Sbjct: 229 CLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNL------------------- 269
Query: 194 DYFITSDKVYLITGSDDFTVKVWDYETKTCVQILEGHTNNVTAVCFHPELRIIITAS--E 251
+TK VQ L+GHT+ V + HP II +A+
Sbjct: 270 -------------------------QTKEIVQKLQGHTDVVISTACHPTENIIASAALEN 304
Query: 252 DGTILIWNA 260
D TI +W +
Sbjct: 305 DKTIKLWKS 313
>pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f)
Length = 315
Score = 100 bits (248), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 69/276 (25%), Positives = 125/276 (45%), Gaps = 12/276 (4%)
Query: 20 VKSVDFHPTQPWVLASLYSGTVCIWNYHSQTTEKSVKVTDSPVRTAKFVAREHWIVCGSD 79
V SV F P W+ +S + IW + EK++ + + + + +V SD
Sbjct: 29 VSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASD 88
Query: 80 DKFIRVFDYNTMASVKEFEAHEDYIRSLAVHPTFPFVLTASDDKLIKLWDWEKNWECTQT 139
DK ++++D ++ +K + H +Y+ +P +++ S D+ +++WD K +C +T
Sbjct: 89 DKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWD-VKTGKCLKT 147
Query: 140 FEGHSHYVMQSAFNPKDLNTFASASLDGTIQIWNMDSSAAKFTL-DAHEKGINCIDYFIT 198
HS V FN +D + S+S DG +IW+ S TL D ++ + + +
Sbjct: 148 LPAHSDPVSAVHFN-RDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKF--S 204
Query: 199 SDKVYLITGSDDFTVKVWDYETKTCVQILEGHTNNVTAVCFHPELRI-----IITASEDG 253
+ Y++ + D T+K+WDY C++ GH N C + I++ SED
Sbjct: 205 PNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNE--KYCIFANFSVTGGKWIVSGSEDN 262
Query: 254 TILIWNATTFRLQNTLSSGLERVWSIGYKKGSNQVA 289
+ IWN T + L + V S N +A
Sbjct: 263 LVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIA 298
Score = 86.7 bits (213), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 52/174 (29%), Positives = 95/174 (54%), Gaps = 6/174 (3%)
Query: 97 FEAHEDYIRSLAVHPTFPFVLTASDDKLIKLWD-WEKNWECTQTFEGHSHYVMQSAFNPK 155
H + S+ P ++ ++S DKLIK+W ++ +E +T GH + A++
Sbjct: 22 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFE--KTISGHKLGISDVAWS-S 78
Query: 156 DLNTFASASLDGTIQIWNMDSSAAKFTLDAHEKGINCIDYFITSDKVYLITGSDDFTVKV 215
D N SAS D T++IW++ S TL H + C ++ S+ +++GS D +V++
Sbjct: 79 DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSN--LIVSGSFDESVRI 136
Query: 216 WDYETKTCVQILEGHTNNVTAVCFHPELRIIITASEDGTILIWNATTFRLQNTL 269
WD +T C++ L H++ V+AV F+ + +I+++S DG IW+ + + TL
Sbjct: 137 WDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTL 190
Score = 80.1 bits (196), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 50/169 (29%), Positives = 87/169 (51%), Gaps = 13/169 (7%)
Query: 131 EKNWECTQTFEGHSHYVMQSAFNPKDLNTFASASLDGTIQIWNMDSSAAKFTLDAHEKGI 190
+ N+ T GH+ V F+P AS+S D I+IW + T+ H+ GI
Sbjct: 13 KPNYALKFTLAGHTKAVSSVKFSPNG-EWLASSSADKLIKIWGAYDGKFEKTISGHKLGI 71
Query: 191 NCIDYFITSDKVYLITGSDDFTVKVWDYETKTCVQILEGHTNNVTAVCFHPELRIIITAS 250
+ D +SD L++ SDD T+K+WD + C++ L+GH+N V F+P+ +I++ S
Sbjct: 72 S--DVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGS 129
Query: 251 EDGTILIWNATTFRLQNTLSSGLERVWSIGYKKGSNQVAFGCDNGTLIV 299
D ++ IW+ T + TL + + V ++ + + +G+LIV
Sbjct: 130 FDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNR----------DGSLIV 168
Score = 61.2 bits (147), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 56/249 (22%), Positives = 98/249 (39%), Gaps = 50/249 (20%)
Query: 17 SDRVKSVDFHPTQPWVLASLYSGTVCIWNYHSQTTEKSVKVTDSPVRTAKFVAREHWIVC 76
S+ V +F+P +++ + +V IW+ + K++ PV F IV
Sbjct: 110 SNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVS 169
Query: 77 GSDDKFIRVFDYNTMASVKEF-EAHEDYIRSLAVHPTFPFVLTASDDKLIKLWDWEKNWE 135
S D R++D + +K + + + P ++L A+ D +KLWD+ K +
Sbjct: 170 SSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKG-K 228
Query: 136 CTQTFEGHSH--YVMQSAFNPKDLNTFASASLDGTIQIWNMDSSAAKFTLDAHEKGINCI 193
C +T+ GH + Y + + F+ S S D + IWN+
Sbjct: 229 CLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNL------------------- 269
Query: 194 DYFITSDKVYLITGSDDFTVKVWDYETKTCVQILEGHTNNVTAVCFHPELRIIITAS--E 251
+TK VQ L+GHT+ V + HP II +A+
Sbjct: 270 -------------------------QTKEIVQKLQGHTDVVISTACHPTENIIASAALEN 304
Query: 252 DGTILIWNA 260
D TI ++ +
Sbjct: 305 DKTIKLFKS 313
>pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y)
Length = 315
Score = 100 bits (248), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 69/276 (25%), Positives = 125/276 (45%), Gaps = 12/276 (4%)
Query: 20 VKSVDFHPTQPWVLASLYSGTVCIWNYHSQTTEKSVKVTDSPVRTAKFVAREHWIVCGSD 79
V SV F P W+ +S + IW + EK++ + + + + +V SD
Sbjct: 29 VSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASD 88
Query: 80 DKFIRVFDYNTMASVKEFEAHEDYIRSLAVHPTFPFVLTASDDKLIKLWDWEKNWECTQT 139
DK ++++D ++ +K + H +Y+ +P +++ S D+ +++WD K +C +T
Sbjct: 89 DKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWD-VKTGKCLKT 147
Query: 140 FEGHSHYVMQSAFNPKDLNTFASASLDGTIQIWNMDSSAAKFTL-DAHEKGINCIDYFIT 198
HS V FN +D + S+S DG +IW+ S TL D ++ + + +
Sbjct: 148 LPAHSDPVSAVHFN-RDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKF--S 204
Query: 199 SDKVYLITGSDDFTVKVWDYETKTCVQILEGHTNNVTAVCFHPELRI-----IITASEDG 253
+ Y++ + D T+K+WDY C++ GH N C + I++ SED
Sbjct: 205 PNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNE--KYCIFANFSVTGGKWIVSGSEDN 262
Query: 254 TILIWNATTFRLQNTLSSGLERVWSIGYKKGSNQVA 289
+ IWN T + L + V S N +A
Sbjct: 263 LVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIA 298
Score = 86.7 bits (213), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 52/174 (29%), Positives = 95/174 (54%), Gaps = 6/174 (3%)
Query: 97 FEAHEDYIRSLAVHPTFPFVLTASDDKLIKLWD-WEKNWECTQTFEGHSHYVMQSAFNPK 155
H + S+ P ++ ++S DKLIK+W ++ +E +T GH + A++
Sbjct: 22 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFE--KTISGHKLGISDVAWS-S 78
Query: 156 DLNTFASASLDGTIQIWNMDSSAAKFTLDAHEKGINCIDYFITSDKVYLITGSDDFTVKV 215
D N SAS D T++IW++ S TL H + C ++ S+ +++GS D +V++
Sbjct: 79 DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSN--LIVSGSFDESVRI 136
Query: 216 WDYETKTCVQILEGHTNNVTAVCFHPELRIIITASEDGTILIWNATTFRLQNTL 269
WD +T C++ L H++ V+AV F+ + +I+++S DG IW+ + + TL
Sbjct: 137 WDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTL 190
Score = 80.1 bits (196), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 50/169 (29%), Positives = 87/169 (51%), Gaps = 13/169 (7%)
Query: 131 EKNWECTQTFEGHSHYVMQSAFNPKDLNTFASASLDGTIQIWNMDSSAAKFTLDAHEKGI 190
+ N+ T GH+ V F+P AS+S D I+IW + T+ H+ GI
Sbjct: 13 KPNYALKFTLAGHTKAVSSVKFSPNG-EWLASSSADKLIKIWGAYDGKFEKTISGHKLGI 71
Query: 191 NCIDYFITSDKVYLITGSDDFTVKVWDYETKTCVQILEGHTNNVTAVCFHPELRIIITAS 250
+ D +SD L++ SDD T+K+WD + C++ L+GH+N V F+P+ +I++ S
Sbjct: 72 S--DVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGS 129
Query: 251 EDGTILIWNATTFRLQNTLSSGLERVWSIGYKKGSNQVAFGCDNGTLIV 299
D ++ IW+ T + TL + + V ++ + + +G+LIV
Sbjct: 130 FDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNR----------DGSLIV 168
Score = 61.6 bits (148), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 56/249 (22%), Positives = 98/249 (39%), Gaps = 50/249 (20%)
Query: 17 SDRVKSVDFHPTQPWVLASLYSGTVCIWNYHSQTTEKSVKVTDSPVRTAKFVAREHWIVC 76
S+ V +F+P +++ + +V IW+ + K++ PV F IV
Sbjct: 110 SNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVS 169
Query: 77 GSDDKFIRVFDYNTMASVKEF-EAHEDYIRSLAVHPTFPFVLTASDDKLIKLWDWEKNWE 135
S D R++D + +K + + + P ++L A+ D +KLWD+ K +
Sbjct: 170 SSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKG-K 228
Query: 136 CTQTFEGHSH--YVMQSAFNPKDLNTFASASLDGTIQIWNMDSSAAKFTLDAHEKGINCI 193
C +T+ GH + Y + + F+ S S D + IWN+
Sbjct: 229 CLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNL------------------- 269
Query: 194 DYFITSDKVYLITGSDDFTVKVWDYETKTCVQILEGHTNNVTAVCFHPELRIIITAS--E 251
+TK VQ L+GHT+ V + HP II +A+
Sbjct: 270 -------------------------QTKEIVQKLQGHTDVVISTACHPTENIIASAALEN 304
Query: 252 DGTILIWNA 260
D TI ++ +
Sbjct: 305 DKTIKLYKS 313
>pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction
Length = 318
Score = 100 bits (248), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 69/276 (25%), Positives = 125/276 (45%), Gaps = 12/276 (4%)
Query: 20 VKSVDFHPTQPWVLASLYSGTVCIWNYHSQTTEKSVKVTDSPVRTAKFVAREHWIVCGSD 79
V SV F P W+ +S + IW + EK++ + + + + +V SD
Sbjct: 32 VSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASD 91
Query: 80 DKFIRVFDYNTMASVKEFEAHEDYIRSLAVHPTFPFVLTASDDKLIKLWDWEKNWECTQT 139
DK ++++D ++ +K + H +Y+ +P +++ S D+ +++WD K +C +T
Sbjct: 92 DKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWD-VKTGKCLKT 150
Query: 140 FEGHSHYVMQSAFNPKDLNTFASASLDGTIQIWNMDSSAAKFTL-DAHEKGINCIDYFIT 198
HS V FN +D + S+S DG +IW+ S TL D ++ + + +
Sbjct: 151 LPAHSDPVSAVHFN-RDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKF--S 207
Query: 199 SDKVYLITGSDDFTVKVWDYETKTCVQILEGHTNNVTAVCFHPELRI-----IITASEDG 253
+ Y++ + D T+K+WDY C++ GH N C + I++ SED
Sbjct: 208 PNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNE--KYCIFANFSVTGGKWIVSGSEDN 265
Query: 254 TILIWNATTFRLQNTLSSGLERVWSIGYKKGSNQVA 289
+ IWN T + L + V S N +A
Sbjct: 266 LVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIA 301
Score = 86.7 bits (213), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 52/174 (29%), Positives = 95/174 (54%), Gaps = 6/174 (3%)
Query: 97 FEAHEDYIRSLAVHPTFPFVLTASDDKLIKLWD-WEKNWECTQTFEGHSHYVMQSAFNPK 155
H + S+ P ++ ++S DKLIK+W ++ +E +T GH + A++
Sbjct: 25 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFE--KTISGHKLGISDVAWS-S 81
Query: 156 DLNTFASASLDGTIQIWNMDSSAAKFTLDAHEKGINCIDYFITSDKVYLITGSDDFTVKV 215
D N SAS D T++IW++ S TL H + C ++ S+ +++GS D +V++
Sbjct: 82 DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSN--LIVSGSFDESVRI 139
Query: 216 WDYETKTCVQILEGHTNNVTAVCFHPELRIIITASEDGTILIWNATTFRLQNTL 269
WD +T C++ L H++ V+AV F+ + +I+++S DG IW+ + + TL
Sbjct: 140 WDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTL 193
Score = 80.5 bits (197), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 50/169 (29%), Positives = 87/169 (51%), Gaps = 13/169 (7%)
Query: 131 EKNWECTQTFEGHSHYVMQSAFNPKDLNTFASASLDGTIQIWNMDSSAAKFTLDAHEKGI 190
+ N+ T GH+ V F+P AS+S D I+IW + T+ H+ GI
Sbjct: 16 KPNYALKFTLAGHTKAVSSVKFSPNG-EWLASSSADKLIKIWGAYDGKFEKTISGHKLGI 74
Query: 191 NCIDYFITSDKVYLITGSDDFTVKVWDYETKTCVQILEGHTNNVTAVCFHPELRIIITAS 250
+ D +SD L++ SDD T+K+WD + C++ L+GH+N V F+P+ +I++ S
Sbjct: 75 S--DVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGS 132
Query: 251 EDGTILIWNATTFRLQNTLSSGLERVWSIGYKKGSNQVAFGCDNGTLIV 299
D ++ IW+ T + TL + + V ++ + + +G+LIV
Sbjct: 133 FDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNR----------DGSLIV 171
Score = 63.9 bits (154), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 58/255 (22%), Positives = 99/255 (38%), Gaps = 50/255 (19%)
Query: 11 KEFIQKSDRVKSVDFHPTQPWVLASLYSGTVCIWNYHSQTTEKSVKVTDSPVRTAKFVAR 70
K S+ V +F+P +++ + +V IW+ + K++ PV F
Sbjct: 107 KTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRD 166
Query: 71 EHWIVCGSDDKFIRVFDYNTMASVKEF-EAHEDYIRSLAVHPTFPFVLTASDDKLIKLWD 129
IV S D R++D + +K + + + P ++L A+ D +KLWD
Sbjct: 167 GSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWD 226
Query: 130 WEKNWECTQTFEGHSH--YVMQSAFNPKDLNTFASASLDGTIQIWNMDSSAAKFTLDAHE 187
+ K +C +T+ GH + Y + + F+ S S D + IWN+
Sbjct: 227 YSKG-KCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNL------------- 272
Query: 188 KGINCIDYFITSDKVYLITGSDDFTVKVWDYETKTCVQILEGHTNNVTAVCFHPELRIII 247
+TK VQ L+GHT+ V + HP II
Sbjct: 273 -------------------------------QTKEIVQKLQGHTDVVISTACHPTENIIA 301
Query: 248 TAS--EDGTILIWNA 260
+A+ D TI +W +
Sbjct: 302 SAALENDKTIKLWKS 316
>pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX
pdb|2H14|A Chain A, Crystal Of Wdr5 (Apo-Form)
pdb|3P4F|A Chain A, Structural And Biochemical Insights Into Mll1 Core Complex
Assembly And Regulation
Length = 317
Score = 100 bits (248), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 69/276 (25%), Positives = 125/276 (45%), Gaps = 12/276 (4%)
Query: 20 VKSVDFHPTQPWVLASLYSGTVCIWNYHSQTTEKSVKVTDSPVRTAKFVAREHWIVCGSD 79
V SV F P W+ +S + IW + EK++ + + + + +V SD
Sbjct: 31 VSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASD 90
Query: 80 DKFIRVFDYNTMASVKEFEAHEDYIRSLAVHPTFPFVLTASDDKLIKLWDWEKNWECTQT 139
DK ++++D ++ +K + H +Y+ +P +++ S D+ +++WD K +C +T
Sbjct: 91 DKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWD-VKTGKCLKT 149
Query: 140 FEGHSHYVMQSAFNPKDLNTFASASLDGTIQIWNMDSSAAKFTL-DAHEKGINCIDYFIT 198
HS V FN +D + S+S DG +IW+ S TL D ++ + + +
Sbjct: 150 LPAHSDPVSAVHFN-RDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKF--S 206
Query: 199 SDKVYLITGSDDFTVKVWDYETKTCVQILEGHTNNVTAVCFHPELRI-----IITASEDG 253
+ Y++ + D T+K+WDY C++ GH N C + I++ SED
Sbjct: 207 PNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNE--KYCIFANFSVTGGKWIVSGSEDN 264
Query: 254 TILIWNATTFRLQNTLSSGLERVWSIGYKKGSNQVA 289
+ IWN T + L + V S N +A
Sbjct: 265 LVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIA 300
Score = 86.7 bits (213), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 52/174 (29%), Positives = 95/174 (54%), Gaps = 6/174 (3%)
Query: 97 FEAHEDYIRSLAVHPTFPFVLTASDDKLIKLWD-WEKNWECTQTFEGHSHYVMQSAFNPK 155
H + S+ P ++ ++S DKLIK+W ++ +E +T GH + A++
Sbjct: 24 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFE--KTISGHKLGISDVAWS-S 80
Query: 156 DLNTFASASLDGTIQIWNMDSSAAKFTLDAHEKGINCIDYFITSDKVYLITGSDDFTVKV 215
D N SAS D T++IW++ S TL H + C ++ S+ +++GS D +V++
Sbjct: 81 DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSN--LIVSGSFDESVRI 138
Query: 216 WDYETKTCVQILEGHTNNVTAVCFHPELRIIITASEDGTILIWNATTFRLQNTL 269
WD +T C++ L H++ V+AV F+ + +I+++S DG IW+ + + TL
Sbjct: 139 WDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTL 192
Score = 80.5 bits (197), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 50/169 (29%), Positives = 87/169 (51%), Gaps = 13/169 (7%)
Query: 131 EKNWECTQTFEGHSHYVMQSAFNPKDLNTFASASLDGTIQIWNMDSSAAKFTLDAHEKGI 190
+ N+ T GH+ V F+P AS+S D I+IW + T+ H+ GI
Sbjct: 15 KPNYALKFTLAGHTKAVSSVKFSPNG-EWLASSSADKLIKIWGAYDGKFEKTISGHKLGI 73
Query: 191 NCIDYFITSDKVYLITGSDDFTVKVWDYETKTCVQILEGHTNNVTAVCFHPELRIIITAS 250
+ D +SD L++ SDD T+K+WD + C++ L+GH+N V F+P+ +I++ S
Sbjct: 74 S--DVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGS 131
Query: 251 EDGTILIWNATTFRLQNTLSSGLERVWSIGYKKGSNQVAFGCDNGTLIV 299
D ++ IW+ T + TL + + V ++ + + +G+LIV
Sbjct: 132 FDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNR----------DGSLIV 170
Score = 64.3 bits (155), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 58/255 (22%), Positives = 99/255 (38%), Gaps = 50/255 (19%)
Query: 11 KEFIQKSDRVKSVDFHPTQPWVLASLYSGTVCIWNYHSQTTEKSVKVTDSPVRTAKFVAR 70
K S+ V +F+P +++ + +V IW+ + K++ PV F
Sbjct: 106 KTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRD 165
Query: 71 EHWIVCGSDDKFIRVFDYNTMASVKEF-EAHEDYIRSLAVHPTFPFVLTASDDKLIKLWD 129
IV S D R++D + +K + + + P ++L A+ D +KLWD
Sbjct: 166 GSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWD 225
Query: 130 WEKNWECTQTFEGHSH--YVMQSAFNPKDLNTFASASLDGTIQIWNMDSSAAKFTLDAHE 187
+ K +C +T+ GH + Y + + F+ S S D + IWN+
Sbjct: 226 YSKG-KCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNL------------- 271
Query: 188 KGINCIDYFITSDKVYLITGSDDFTVKVWDYETKTCVQILEGHTNNVTAVCFHPELRIII 247
+TK VQ L+GHT+ V + HP II
Sbjct: 272 -------------------------------QTKEIVQKLQGHTDVVISTACHPTENIIA 300
Query: 248 TAS--EDGTILIWNA 260
+A+ D TI +W +
Sbjct: 301 SAALENDKTIKLWKS 315
>pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel
Histone Mark That Supports Euchromatin Maintenance
Length = 318
Score = 99.8 bits (247), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 69/276 (25%), Positives = 125/276 (45%), Gaps = 12/276 (4%)
Query: 20 VKSVDFHPTQPWVLASLYSGTVCIWNYHSQTTEKSVKVTDSPVRTAKFVAREHWIVCGSD 79
V SV F P W+ +S + IW + EK++ + + + + +V SD
Sbjct: 32 VSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASD 91
Query: 80 DKFIRVFDYNTMASVKEFEAHEDYIRSLAVHPTFPFVLTASDDKLIKLWDWEKNWECTQT 139
DK ++++D ++ +K + H +Y+ +P +++ S D+ +++WD K +C +T
Sbjct: 92 DKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWD-VKTGKCLKT 150
Query: 140 FEGHSHYVMQSAFNPKDLNTFASASLDGTIQIWNMDSSAAKFTL-DAHEKGINCIDYFIT 198
HS V FN +D + S+S DG +IW+ S TL D ++ + + +
Sbjct: 151 LPAHSDPVSAVHFN-RDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKF--S 207
Query: 199 SDKVYLITGSDDFTVKVWDYETKTCVQILEGHTNNVTAVCFHPELRI-----IITASEDG 253
+ Y++ + D T+K+WDY C++ GH N C + I++ SED
Sbjct: 208 PNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNE--KYCIFANFSVTGGKWIVSGSEDN 265
Query: 254 TILIWNATTFRLQNTLSSGLERVWSIGYKKGSNQVA 289
+ IWN T + L + V S N +A
Sbjct: 266 LVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIA 301
Score = 86.7 bits (213), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 52/174 (29%), Positives = 95/174 (54%), Gaps = 6/174 (3%)
Query: 97 FEAHEDYIRSLAVHPTFPFVLTASDDKLIKLWD-WEKNWECTQTFEGHSHYVMQSAFNPK 155
H + S+ P ++ ++S DKLIK+W ++ +E +T GH + A++
Sbjct: 25 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFE--KTISGHKLGISDVAWS-S 81
Query: 156 DLNTFASASLDGTIQIWNMDSSAAKFTLDAHEKGINCIDYFITSDKVYLITGSDDFTVKV 215
D N SAS D T++IW++ S TL H + C ++ S+ +++GS D +V++
Sbjct: 82 DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSN--LIVSGSFDESVRI 139
Query: 216 WDYETKTCVQILEGHTNNVTAVCFHPELRIIITASEDGTILIWNATTFRLQNTL 269
WD +T C++ L H++ V+AV F+ + +I+++S DG IW+ + + TL
Sbjct: 140 WDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTL 193
Score = 80.5 bits (197), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 50/169 (29%), Positives = 87/169 (51%), Gaps = 13/169 (7%)
Query: 131 EKNWECTQTFEGHSHYVMQSAFNPKDLNTFASASLDGTIQIWNMDSSAAKFTLDAHEKGI 190
+ N+ T GH+ V F+P AS+S D I+IW + T+ H+ GI
Sbjct: 16 KPNYALKFTLAGHTKAVSSVKFSPNG-EWLASSSADKLIKIWGAYDGKFEKTISGHKLGI 74
Query: 191 NCIDYFITSDKVYLITGSDDFTVKVWDYETKTCVQILEGHTNNVTAVCFHPELRIIITAS 250
+ D +SD L++ SDD T+K+WD + C++ L+GH+N V F+P+ +I++ S
Sbjct: 75 S--DVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGS 132
Query: 251 EDGTILIWNATTFRLQNTLSSGLERVWSIGYKKGSNQVAFGCDNGTLIV 299
D ++ IW+ T + TL + + V ++ + + +G+LIV
Sbjct: 133 FDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNR----------DGSLIV 171
Score = 64.3 bits (155), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 58/255 (22%), Positives = 99/255 (38%), Gaps = 50/255 (19%)
Query: 11 KEFIQKSDRVKSVDFHPTQPWVLASLYSGTVCIWNYHSQTTEKSVKVTDSPVRTAKFVAR 70
K S+ V +F+P +++ + +V IW+ + K++ PV F
Sbjct: 107 KTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRD 166
Query: 71 EHWIVCGSDDKFIRVFDYNTMASVKEF-EAHEDYIRSLAVHPTFPFVLTASDDKLIKLWD 129
IV S D R++D + +K + + + P ++L A+ D +KLWD
Sbjct: 167 GSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWD 226
Query: 130 WEKNWECTQTFEGHSH--YVMQSAFNPKDLNTFASASLDGTIQIWNMDSSAAKFTLDAHE 187
+ K +C +T+ GH + Y + + F+ S S D + IWN+
Sbjct: 227 YSKG-KCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNL------------- 272
Query: 188 KGINCIDYFITSDKVYLITGSDDFTVKVWDYETKTCVQILEGHTNNVTAVCFHPELRIII 247
+TK VQ L+GHT+ V + HP II
Sbjct: 273 -------------------------------QTKEIVQKLQGHTDVVISTACHPTENIIA 301
Query: 248 TAS--EDGTILIWNA 260
+A+ D TI +W +
Sbjct: 302 SAALENDKTIKLWKS 316
>pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 311
Score = 99.8 bits (247), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 69/276 (25%), Positives = 125/276 (45%), Gaps = 12/276 (4%)
Query: 20 VKSVDFHPTQPWVLASLYSGTVCIWNYHSQTTEKSVKVTDSPVRTAKFVAREHWIVCGSD 79
V SV F P W+ +S + IW + EK++ + + + + +V SD
Sbjct: 25 VSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASD 84
Query: 80 DKFIRVFDYNTMASVKEFEAHEDYIRSLAVHPTFPFVLTASDDKLIKLWDWEKNWECTQT 139
DK ++++D ++ +K + H +Y+ +P +++ S D+ +++WD K +C +T
Sbjct: 85 DKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWD-VKTGKCLKT 143
Query: 140 FEGHSHYVMQSAFNPKDLNTFASASLDGTIQIWNMDSSAAKFTL-DAHEKGINCIDYFIT 198
HS V FN +D + S+S DG +IW+ S TL D ++ + + +
Sbjct: 144 LPAHSDPVSAVHFN-RDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKF--S 200
Query: 199 SDKVYLITGSDDFTVKVWDYETKTCVQILEGHTNNVTAVCFHPELRI-----IITASEDG 253
+ Y++ + D T+K+WDY C++ GH N C + I++ SED
Sbjct: 201 PNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNE--KYCIFANFSVTGGKWIVSGSEDN 258
Query: 254 TILIWNATTFRLQNTLSSGLERVWSIGYKKGSNQVA 289
+ IWN T + L + V S N +A
Sbjct: 259 LVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIA 294
Score = 86.3 bits (212), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 52/174 (29%), Positives = 95/174 (54%), Gaps = 6/174 (3%)
Query: 97 FEAHEDYIRSLAVHPTFPFVLTASDDKLIKLWD-WEKNWECTQTFEGHSHYVMQSAFNPK 155
H + S+ P ++ ++S DKLIK+W ++ +E +T GH + A++
Sbjct: 18 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFE--KTISGHKLGISDVAWS-S 74
Query: 156 DLNTFASASLDGTIQIWNMDSSAAKFTLDAHEKGINCIDYFITSDKVYLITGSDDFTVKV 215
D N SAS D T++IW++ S TL H + C ++ S+ +++GS D +V++
Sbjct: 75 DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSN--LIVSGSFDESVRI 132
Query: 216 WDYETKTCVQILEGHTNNVTAVCFHPELRIIITASEDGTILIWNATTFRLQNTL 269
WD +T C++ L H++ V+AV F+ + +I+++S DG IW+ + + TL
Sbjct: 133 WDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTL 186
Score = 80.1 bits (196), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 50/169 (29%), Positives = 87/169 (51%), Gaps = 13/169 (7%)
Query: 131 EKNWECTQTFEGHSHYVMQSAFNPKDLNTFASASLDGTIQIWNMDSSAAKFTLDAHEKGI 190
+ N+ T GH+ V F+P AS+S D I+IW + T+ H+ GI
Sbjct: 9 KPNYALKFTLAGHTKAVSSVKFSPNG-EWLASSSADKLIKIWGAYDGKFEKTISGHKLGI 67
Query: 191 NCIDYFITSDKVYLITGSDDFTVKVWDYETKTCVQILEGHTNNVTAVCFHPELRIIITAS 250
+ D +SD L++ SDD T+K+WD + C++ L+GH+N V F+P+ +I++ S
Sbjct: 68 S--DVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGS 125
Query: 251 EDGTILIWNATTFRLQNTLSSGLERVWSIGYKKGSNQVAFGCDNGTLIV 299
D ++ IW+ T + TL + + V ++ + + +G+LIV
Sbjct: 126 FDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNR----------DGSLIV 164
Score = 64.3 bits (155), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 58/255 (22%), Positives = 99/255 (38%), Gaps = 50/255 (19%)
Query: 11 KEFIQKSDRVKSVDFHPTQPWVLASLYSGTVCIWNYHSQTTEKSVKVTDSPVRTAKFVAR 70
K S+ V +F+P +++ + +V IW+ + K++ PV F
Sbjct: 100 KTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRD 159
Query: 71 EHWIVCGSDDKFIRVFDYNTMASVKEF-EAHEDYIRSLAVHPTFPFVLTASDDKLIKLWD 129
IV S D R++D + +K + + + P ++L A+ D +KLWD
Sbjct: 160 GSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWD 219
Query: 130 WEKNWECTQTFEGHSH--YVMQSAFNPKDLNTFASASLDGTIQIWNMDSSAAKFTLDAHE 187
+ K +C +T+ GH + Y + + F+ S S D + IWN+
Sbjct: 220 YSKG-KCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNL------------- 265
Query: 188 KGINCIDYFITSDKVYLITGSDDFTVKVWDYETKTCVQILEGHTNNVTAVCFHPELRIII 247
+TK VQ L+GHT+ V + HP II
Sbjct: 266 -------------------------------QTKEIVQKLQGHTDVVISTACHPTENIIA 294
Query: 248 TAS--EDGTILIWNA 260
+A+ D TI +W +
Sbjct: 295 SAALENDKTIKLWKS 309
>pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|C Chain C, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|D Chain D, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|4IA9|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 In Complex
With 2-
Chloro-4-Fluoro-3-Methyl-N-[2-(4-Methylpiperazin-1-Yl)-
5- Nitrophenyl]benzamide
Length = 312
Score = 99.8 bits (247), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 69/276 (25%), Positives = 125/276 (45%), Gaps = 12/276 (4%)
Query: 20 VKSVDFHPTQPWVLASLYSGTVCIWNYHSQTTEKSVKVTDSPVRTAKFVAREHWIVCGSD 79
V SV F P W+ +S + IW + EK++ + + + + +V SD
Sbjct: 26 VSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASD 85
Query: 80 DKFIRVFDYNTMASVKEFEAHEDYIRSLAVHPTFPFVLTASDDKLIKLWDWEKNWECTQT 139
DK ++++D ++ +K + H +Y+ +P +++ S D+ +++WD K +C +T
Sbjct: 86 DKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWD-VKTGKCLKT 144
Query: 140 FEGHSHYVMQSAFNPKDLNTFASASLDGTIQIWNMDSSAAKFTL-DAHEKGINCIDYFIT 198
HS V FN +D + S+S DG +IW+ S TL D ++ + + +
Sbjct: 145 LPAHSDPVSAVHFN-RDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKF--S 201
Query: 199 SDKVYLITGSDDFTVKVWDYETKTCVQILEGHTNNVTAVCFHPELRI-----IITASEDG 253
+ Y++ + D T+K+WDY C++ GH N C + I++ SED
Sbjct: 202 PNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNE--KYCIFANFSVTGGKWIVSGSEDN 259
Query: 254 TILIWNATTFRLQNTLSSGLERVWSIGYKKGSNQVA 289
+ IWN T + L + V S N +A
Sbjct: 260 LVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIA 295
Score = 86.3 bits (212), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 52/174 (29%), Positives = 95/174 (54%), Gaps = 6/174 (3%)
Query: 97 FEAHEDYIRSLAVHPTFPFVLTASDDKLIKLWD-WEKNWECTQTFEGHSHYVMQSAFNPK 155
H + S+ P ++ ++S DKLIK+W ++ +E +T GH + A++
Sbjct: 19 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFE--KTISGHKLGISDVAWS-S 75
Query: 156 DLNTFASASLDGTIQIWNMDSSAAKFTLDAHEKGINCIDYFITSDKVYLITGSDDFTVKV 215
D N SAS D T++IW++ S TL H + C ++ S+ +++GS D +V++
Sbjct: 76 DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSN--LIVSGSFDESVRI 133
Query: 216 WDYETKTCVQILEGHTNNVTAVCFHPELRIIITASEDGTILIWNATTFRLQNTL 269
WD +T C++ L H++ V+AV F+ + +I+++S DG IW+ + + TL
Sbjct: 134 WDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTL 187
Score = 80.1 bits (196), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 50/169 (29%), Positives = 87/169 (51%), Gaps = 13/169 (7%)
Query: 131 EKNWECTQTFEGHSHYVMQSAFNPKDLNTFASASLDGTIQIWNMDSSAAKFTLDAHEKGI 190
+ N+ T GH+ V F+P AS+S D I+IW + T+ H+ GI
Sbjct: 10 KPNYALKFTLAGHTKAVSSVKFSPNG-EWLASSSADKLIKIWGAYDGKFEKTISGHKLGI 68
Query: 191 NCIDYFITSDKVYLITGSDDFTVKVWDYETKTCVQILEGHTNNVTAVCFHPELRIIITAS 250
+ D +SD L++ SDD T+K+WD + C++ L+GH+N V F+P+ +I++ S
Sbjct: 69 S--DVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGS 126
Query: 251 EDGTILIWNATTFRLQNTLSSGLERVWSIGYKKGSNQVAFGCDNGTLIV 299
D ++ IW+ T + TL + + V ++ + + +G+LIV
Sbjct: 127 FDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNR----------DGSLIV 165
Score = 64.3 bits (155), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 58/255 (22%), Positives = 99/255 (38%), Gaps = 50/255 (19%)
Query: 11 KEFIQKSDRVKSVDFHPTQPWVLASLYSGTVCIWNYHSQTTEKSVKVTDSPVRTAKFVAR 70
K S+ V +F+P +++ + +V IW+ + K++ PV F
Sbjct: 101 KTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRD 160
Query: 71 EHWIVCGSDDKFIRVFDYNTMASVKEF-EAHEDYIRSLAVHPTFPFVLTASDDKLIKLWD 129
IV S D R++D + +K + + + P ++L A+ D +KLWD
Sbjct: 161 GSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWD 220
Query: 130 WEKNWECTQTFEGHSH--YVMQSAFNPKDLNTFASASLDGTIQIWNMDSSAAKFTLDAHE 187
+ K +C +T+ GH + Y + + F+ S S D + IWN+
Sbjct: 221 YSKG-KCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNL------------- 266
Query: 188 KGINCIDYFITSDKVYLITGSDDFTVKVWDYETKTCVQILEGHTNNVTAVCFHPELRIII 247
+TK VQ L+GHT+ V + HP II
Sbjct: 267 -------------------------------QTKEIVQKLQGHTDVVISTACHPTENIIA 295
Query: 248 TAS--EDGTILIWNA 260
+A+ D TI +W +
Sbjct: 296 SAALENDKTIKLWKS 310
>pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3PSL|B Chain B, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3UVK|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll2
pdb|3UVL|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll3
pdb|3UVM|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll4
pdb|3UVN|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVN|C Chain C, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVO|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1b
Length = 318
Score = 99.8 bits (247), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 69/276 (25%), Positives = 125/276 (45%), Gaps = 12/276 (4%)
Query: 20 VKSVDFHPTQPWVLASLYSGTVCIWNYHSQTTEKSVKVTDSPVRTAKFVAREHWIVCGSD 79
V SV F P W+ +S + IW + EK++ + + + + +V SD
Sbjct: 32 VSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASD 91
Query: 80 DKFIRVFDYNTMASVKEFEAHEDYIRSLAVHPTFPFVLTASDDKLIKLWDWEKNWECTQT 139
DK ++++D ++ +K + H +Y+ +P +++ S D+ +++WD K +C +T
Sbjct: 92 DKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWD-VKTGKCLKT 150
Query: 140 FEGHSHYVMQSAFNPKDLNTFASASLDGTIQIWNMDSSAAKFTL-DAHEKGINCIDYFIT 198
HS V FN +D + S+S DG +IW+ S TL D ++ + + +
Sbjct: 151 LPAHSDPVSAVHFN-RDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKF--S 207
Query: 199 SDKVYLITGSDDFTVKVWDYETKTCVQILEGHTNNVTAVCFHPELRI-----IITASEDG 253
+ Y++ + D T+K+WDY C++ GH N C + I++ SED
Sbjct: 208 PNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNE--KYCIFANFSVTGGKWIVSGSEDN 265
Query: 254 TILIWNATTFRLQNTLSSGLERVWSIGYKKGSNQVA 289
+ IWN T + L + V S N +A
Sbjct: 266 LVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIA 301
Score = 86.7 bits (213), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 52/174 (29%), Positives = 95/174 (54%), Gaps = 6/174 (3%)
Query: 97 FEAHEDYIRSLAVHPTFPFVLTASDDKLIKLWD-WEKNWECTQTFEGHSHYVMQSAFNPK 155
H + S+ P ++ ++S DKLIK+W ++ +E +T GH + A++
Sbjct: 25 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFE--KTISGHKLGISDVAWS-S 81
Query: 156 DLNTFASASLDGTIQIWNMDSSAAKFTLDAHEKGINCIDYFITSDKVYLITGSDDFTVKV 215
D N SAS D T++IW++ S TL H + C ++ S+ +++GS D +V++
Sbjct: 82 DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSN--LIVSGSFDESVRI 139
Query: 216 WDYETKTCVQILEGHTNNVTAVCFHPELRIIITASEDGTILIWNATTFRLQNTL 269
WD +T C++ L H++ V+AV F+ + +I+++S DG IW+ + + TL
Sbjct: 140 WDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTL 193
Score = 80.1 bits (196), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 50/169 (29%), Positives = 87/169 (51%), Gaps = 13/169 (7%)
Query: 131 EKNWECTQTFEGHSHYVMQSAFNPKDLNTFASASLDGTIQIWNMDSSAAKFTLDAHEKGI 190
+ N+ T GH+ V F+P AS+S D I+IW + T+ H+ GI
Sbjct: 16 KPNYALKFTLAGHTKAVSSVKFSPNG-EWLASSSADKLIKIWGAYDGKFEKTISGHKLGI 74
Query: 191 NCIDYFITSDKVYLITGSDDFTVKVWDYETKTCVQILEGHTNNVTAVCFHPELRIIITAS 250
+ D +SD L++ SDD T+K+WD + C++ L+GH+N V F+P+ +I++ S
Sbjct: 75 S--DVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGS 132
Query: 251 EDGTILIWNATTFRLQNTLSSGLERVWSIGYKKGSNQVAFGCDNGTLIV 299
D ++ IW+ T + TL + + V ++ + + +G+LIV
Sbjct: 133 FDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNR----------DGSLIV 171
Score = 64.3 bits (155), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 58/255 (22%), Positives = 99/255 (38%), Gaps = 50/255 (19%)
Query: 11 KEFIQKSDRVKSVDFHPTQPWVLASLYSGTVCIWNYHSQTTEKSVKVTDSPVRTAKFVAR 70
K S+ V +F+P +++ + +V IW+ + K++ PV F
Sbjct: 107 KTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRD 166
Query: 71 EHWIVCGSDDKFIRVFDYNTMASVKEF-EAHEDYIRSLAVHPTFPFVLTASDDKLIKLWD 129
IV S D R++D + +K + + + P ++L A+ D +KLWD
Sbjct: 167 GSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWD 226
Query: 130 WEKNWECTQTFEGHSH--YVMQSAFNPKDLNTFASASLDGTIQIWNMDSSAAKFTLDAHE 187
+ K +C +T+ GH + Y + + F+ S S D + IWN+
Sbjct: 227 YSKG-KCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNL------------- 272
Query: 188 KGINCIDYFITSDKVYLITGSDDFTVKVWDYETKTCVQILEGHTNNVTAVCFHPELRIII 247
+TK VQ L+GHT+ V + HP II
Sbjct: 273 -------------------------------QTKEIVQKLQGHTDVVISTACHPTENIIA 301
Query: 248 TAS--EDGTILIWNA 260
+A+ D TI +W +
Sbjct: 302 SAALENDKTIKLWKS 316
>pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H68|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|3EG6|A Chain A, Structure Of Wdr5 Bound To Mll1 Peptide
pdb|4ERQ|A Chain A, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|B Chain B, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|C Chain C, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERY|A Chain A, X-Ray Structure Of Wdr5-Mll3 Win Motif Peptide Binary
Complex
pdb|4ERZ|A Chain A, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|B Chain B, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|C Chain C, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ES0|A Chain A, X-Ray Structure Of Wdr5-Setd1b Win Motif Peptide Binary
Complex
pdb|4ESG|A Chain A, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4ESG|B Chain B, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4EWR|A Chain A, X-Ray Structure Of Wdr5-Setd1a Win Motif Peptide Binary
Complex
Length = 312
Score = 99.8 bits (247), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 69/276 (25%), Positives = 125/276 (45%), Gaps = 12/276 (4%)
Query: 20 VKSVDFHPTQPWVLASLYSGTVCIWNYHSQTTEKSVKVTDSPVRTAKFVAREHWIVCGSD 79
V SV F P W+ +S + IW + EK++ + + + + +V SD
Sbjct: 26 VSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASD 85
Query: 80 DKFIRVFDYNTMASVKEFEAHEDYIRSLAVHPTFPFVLTASDDKLIKLWDWEKNWECTQT 139
DK ++++D ++ +K + H +Y+ +P +++ S D+ +++WD K +C +T
Sbjct: 86 DKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWD-VKTGKCLKT 144
Query: 140 FEGHSHYVMQSAFNPKDLNTFASASLDGTIQIWNMDSSAAKFTL-DAHEKGINCIDYFIT 198
HS V FN +D + S+S DG +IW+ S TL D ++ + + +
Sbjct: 145 LPAHSDPVSAVHFN-RDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKF--S 201
Query: 199 SDKVYLITGSDDFTVKVWDYETKTCVQILEGHTNNVTAVCFHPELRI-----IITASEDG 253
+ Y++ + D T+K+WDY C++ GH N C + I++ SED
Sbjct: 202 PNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNE--KYCIFANFSVTGGKWIVSGSEDN 259
Query: 254 TILIWNATTFRLQNTLSSGLERVWSIGYKKGSNQVA 289
+ IWN T + L + V S N +A
Sbjct: 260 LVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIA 295
Score = 86.3 bits (212), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 52/174 (29%), Positives = 95/174 (54%), Gaps = 6/174 (3%)
Query: 97 FEAHEDYIRSLAVHPTFPFVLTASDDKLIKLWD-WEKNWECTQTFEGHSHYVMQSAFNPK 155
H + S+ P ++ ++S DKLIK+W ++ +E +T GH + A++
Sbjct: 19 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFE--KTISGHKLGISDVAWS-S 75
Query: 156 DLNTFASASLDGTIQIWNMDSSAAKFTLDAHEKGINCIDYFITSDKVYLITGSDDFTVKV 215
D N SAS D T++IW++ S TL H + C ++ S+ +++GS D +V++
Sbjct: 76 DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSN--LIVSGSFDESVRI 133
Query: 216 WDYETKTCVQILEGHTNNVTAVCFHPELRIIITASEDGTILIWNATTFRLQNTL 269
WD +T C++ L H++ V+AV F+ + +I+++S DG IW+ + + TL
Sbjct: 134 WDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTL 187
Score = 80.1 bits (196), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 50/169 (29%), Positives = 87/169 (51%), Gaps = 13/169 (7%)
Query: 131 EKNWECTQTFEGHSHYVMQSAFNPKDLNTFASASLDGTIQIWNMDSSAAKFTLDAHEKGI 190
+ N+ T GH+ V F+P AS+S D I+IW + T+ H+ GI
Sbjct: 10 KPNYALKFTLAGHTKAVSSVKFSPNG-EWLASSSADKLIKIWGAYDGKFEKTISGHKLGI 68
Query: 191 NCIDYFITSDKVYLITGSDDFTVKVWDYETKTCVQILEGHTNNVTAVCFHPELRIIITAS 250
+ D +SD L++ SDD T+K+WD + C++ L+GH+N V F+P+ +I++ S
Sbjct: 69 S--DVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGS 126
Query: 251 EDGTILIWNATTFRLQNTLSSGLERVWSIGYKKGSNQVAFGCDNGTLIV 299
D ++ IW+ T + TL + + V ++ + + +G+LIV
Sbjct: 127 FDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNR----------DGSLIV 165
Score = 63.9 bits (154), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 58/255 (22%), Positives = 99/255 (38%), Gaps = 50/255 (19%)
Query: 11 KEFIQKSDRVKSVDFHPTQPWVLASLYSGTVCIWNYHSQTTEKSVKVTDSPVRTAKFVAR 70
K S+ V +F+P +++ + +V IW+ + K++ PV F
Sbjct: 101 KTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRD 160
Query: 71 EHWIVCGSDDKFIRVFDYNTMASVKEF-EAHEDYIRSLAVHPTFPFVLTASDDKLIKLWD 129
IV S D R++D + +K + + + P ++L A+ D +KLWD
Sbjct: 161 GSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWD 220
Query: 130 WEKNWECTQTFEGHSH--YVMQSAFNPKDLNTFASASLDGTIQIWNMDSSAAKFTLDAHE 187
+ K +C +T+ GH + Y + + F+ S S D + IWN+
Sbjct: 221 YSKG-KCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNL------------- 266
Query: 188 KGINCIDYFITSDKVYLITGSDDFTVKVWDYETKTCVQILEGHTNNVTAVCFHPELRIII 247
+TK VQ L+GHT+ V + HP II
Sbjct: 267 -------------------------------QTKEIVQKLQGHTDVVISTACHPTENIIA 295
Query: 248 TAS--EDGTILIWNA 260
+A+ D TI +W +
Sbjct: 296 SAALENDKTIKLWKS 310
>pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
pdb|2G99|B Chain B, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 308
Score = 99.8 bits (247), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 69/276 (25%), Positives = 125/276 (45%), Gaps = 12/276 (4%)
Query: 20 VKSVDFHPTQPWVLASLYSGTVCIWNYHSQTTEKSVKVTDSPVRTAKFVAREHWIVCGSD 79
V SV F P W+ +S + IW + EK++ + + + + +V SD
Sbjct: 22 VSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASD 81
Query: 80 DKFIRVFDYNTMASVKEFEAHEDYIRSLAVHPTFPFVLTASDDKLIKLWDWEKNWECTQT 139
DK ++++D ++ +K + H +Y+ +P +++ S D+ +++WD K +C +T
Sbjct: 82 DKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWD-VKTGKCLKT 140
Query: 140 FEGHSHYVMQSAFNPKDLNTFASASLDGTIQIWNMDSSAAKFTL-DAHEKGINCIDYFIT 198
HS V FN +D + S+S DG +IW+ S TL D ++ + + +
Sbjct: 141 LPAHSDPVSAVHFN-RDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKF--S 197
Query: 199 SDKVYLITGSDDFTVKVWDYETKTCVQILEGHTNNVTAVCFHPELRI-----IITASEDG 253
+ Y++ + D T+K+WDY C++ GH N C + I++ SED
Sbjct: 198 PNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNE--KYCIFANFSVTGGKWIVSGSEDN 255
Query: 254 TILIWNATTFRLQNTLSSGLERVWSIGYKKGSNQVA 289
+ IWN T + L + V S N +A
Sbjct: 256 LVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIA 291
Score = 86.3 bits (212), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 52/174 (29%), Positives = 95/174 (54%), Gaps = 6/174 (3%)
Query: 97 FEAHEDYIRSLAVHPTFPFVLTASDDKLIKLWD-WEKNWECTQTFEGHSHYVMQSAFNPK 155
H + S+ P ++ ++S DKLIK+W ++ +E +T GH + A++
Sbjct: 15 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFE--KTISGHKLGISDVAWS-S 71
Query: 156 DLNTFASASLDGTIQIWNMDSSAAKFTLDAHEKGINCIDYFITSDKVYLITGSDDFTVKV 215
D N SAS D T++IW++ S TL H + C ++ S+ +++GS D +V++
Sbjct: 72 DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSN--LIVSGSFDESVRI 129
Query: 216 WDYETKTCVQILEGHTNNVTAVCFHPELRIIITASEDGTILIWNATTFRLQNTL 269
WD +T C++ L H++ V+AV F+ + +I+++S DG IW+ + + TL
Sbjct: 130 WDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTL 183
Score = 80.1 bits (196), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 50/169 (29%), Positives = 87/169 (51%), Gaps = 13/169 (7%)
Query: 131 EKNWECTQTFEGHSHYVMQSAFNPKDLNTFASASLDGTIQIWNMDSSAAKFTLDAHEKGI 190
+ N+ T GH+ V F+P AS+S D I+IW + T+ H+ GI
Sbjct: 6 KPNYALKFTLAGHTKAVSSVKFSPNG-EWLASSSADKLIKIWGAYDGKFEKTISGHKLGI 64
Query: 191 NCIDYFITSDKVYLITGSDDFTVKVWDYETKTCVQILEGHTNNVTAVCFHPELRIIITAS 250
+ D +SD L++ SDD T+K+WD + C++ L+GH+N V F+P+ +I++ S
Sbjct: 65 S--DVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGS 122
Query: 251 EDGTILIWNATTFRLQNTLSSGLERVWSIGYKKGSNQVAFGCDNGTLIV 299
D ++ IW+ T + TL + + V ++ + + +G+LIV
Sbjct: 123 FDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNR----------DGSLIV 161
Score = 63.9 bits (154), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 57/249 (22%), Positives = 98/249 (39%), Gaps = 50/249 (20%)
Query: 17 SDRVKSVDFHPTQPWVLASLYSGTVCIWNYHSQTTEKSVKVTDSPVRTAKFVAREHWIVC 76
S+ V +F+P +++ + +V IW+ + K++ PV F IV
Sbjct: 103 SNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVS 162
Query: 77 GSDDKFIRVFDYNTMASVKEF-EAHEDYIRSLAVHPTFPFVLTASDDKLIKLWDWEKNWE 135
S D R++D + +K + + + P ++L A+ D +KLWD+ K +
Sbjct: 163 SSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKG-K 221
Query: 136 CTQTFEGHSH--YVMQSAFNPKDLNTFASASLDGTIQIWNMDSSAAKFTLDAHEKGINCI 193
C +T+ GH + Y + + F+ S S D + IWN+
Sbjct: 222 CLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNL------------------- 262
Query: 194 DYFITSDKVYLITGSDDFTVKVWDYETKTCVQILEGHTNNVTAVCFHPELRIIITAS--E 251
+TK VQ L+GHT+ V + HP II +A+
Sbjct: 263 -------------------------QTKEIVQKLQGHTDVVISTACHPTENIIASAALEN 297
Query: 252 DGTILIWNA 260
D TI +W +
Sbjct: 298 DKTIKLWKS 306
>pdb|2H9L|A Chain A, Wdr5delta23
pdb|2H9P|A Chain A, Wdr5 In Complex With Trimethylated H3k4 Peptide
Length = 329
Score = 99.8 bits (247), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 69/276 (25%), Positives = 125/276 (45%), Gaps = 12/276 (4%)
Query: 20 VKSVDFHPTQPWVLASLYSGTVCIWNYHSQTTEKSVKVTDSPVRTAKFVAREHWIVCGSD 79
V SV F P W+ +S + IW + EK++ + + + + +V SD
Sbjct: 43 VSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASD 102
Query: 80 DKFIRVFDYNTMASVKEFEAHEDYIRSLAVHPTFPFVLTASDDKLIKLWDWEKNWECTQT 139
DK ++++D ++ +K + H +Y+ +P +++ S D+ +++WD K +C +T
Sbjct: 103 DKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWD-VKTGKCLKT 161
Query: 140 FEGHSHYVMQSAFNPKDLNTFASASLDGTIQIWNMDSSAAKFTL-DAHEKGINCIDYFIT 198
HS V FN +D + S+S DG +IW+ S TL D ++ + + +
Sbjct: 162 LPAHSDPVSAVHFN-RDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKF--S 218
Query: 199 SDKVYLITGSDDFTVKVWDYETKTCVQILEGHTNNVTAVCFHPELRI-----IITASEDG 253
+ Y++ + D T+K+WDY C++ GH N C + I++ SED
Sbjct: 219 PNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNE--KYCIFANFSVTGGKWIVSGSEDN 276
Query: 254 TILIWNATTFRLQNTLSSGLERVWSIGYKKGSNQVA 289
+ IWN T + L + V S N +A
Sbjct: 277 LVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIA 312
Score = 86.3 bits (212), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 52/174 (29%), Positives = 95/174 (54%), Gaps = 6/174 (3%)
Query: 97 FEAHEDYIRSLAVHPTFPFVLTASDDKLIKLWD-WEKNWECTQTFEGHSHYVMQSAFNPK 155
H + S+ P ++ ++S DKLIK+W ++ +E +T GH + A++
Sbjct: 36 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFE--KTISGHKLGISDVAWS-S 92
Query: 156 DLNTFASASLDGTIQIWNMDSSAAKFTLDAHEKGINCIDYFITSDKVYLITGSDDFTVKV 215
D N SAS D T++IW++ S TL H + C ++ S+ +++GS D +V++
Sbjct: 93 DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSN--LIVSGSFDESVRI 150
Query: 216 WDYETKTCVQILEGHTNNVTAVCFHPELRIIITASEDGTILIWNATTFRLQNTL 269
WD +T C++ L H++ V+AV F+ + +I+++S DG IW+ + + TL
Sbjct: 151 WDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTL 204
Score = 80.1 bits (196), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 50/169 (29%), Positives = 87/169 (51%), Gaps = 13/169 (7%)
Query: 131 EKNWECTQTFEGHSHYVMQSAFNPKDLNTFASASLDGTIQIWNMDSSAAKFTLDAHEKGI 190
+ N+ T GH+ V F+P AS+S D I+IW + T+ H+ GI
Sbjct: 27 KPNYALKFTLAGHTKAVSSVKFSPNG-EWLASSSADKLIKIWGAYDGKFEKTISGHKLGI 85
Query: 191 NCIDYFITSDKVYLITGSDDFTVKVWDYETKTCVQILEGHTNNVTAVCFHPELRIIITAS 250
+ D +SD L++ SDD T+K+WD + C++ L+GH+N V F+P+ +I++ S
Sbjct: 86 S--DVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGS 143
Query: 251 EDGTILIWNATTFRLQNTLSSGLERVWSIGYKKGSNQVAFGCDNGTLIV 299
D ++ IW+ T + TL + + V ++ + + +G+LIV
Sbjct: 144 FDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNR----------DGSLIV 182
Score = 63.9 bits (154), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 57/249 (22%), Positives = 98/249 (39%), Gaps = 50/249 (20%)
Query: 17 SDRVKSVDFHPTQPWVLASLYSGTVCIWNYHSQTTEKSVKVTDSPVRTAKFVAREHWIVC 76
S+ V +F+P +++ + +V IW+ + K++ PV F IV
Sbjct: 124 SNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVS 183
Query: 77 GSDDKFIRVFDYNTMASVKEF-EAHEDYIRSLAVHPTFPFVLTASDDKLIKLWDWEKNWE 135
S D R++D + +K + + + P ++L A+ D +KLWD+ K +
Sbjct: 184 SSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKG-K 242
Query: 136 CTQTFEGHSH--YVMQSAFNPKDLNTFASASLDGTIQIWNMDSSAAKFTLDAHEKGINCI 193
C +T+ GH + Y + + F+ S S D + IWN+
Sbjct: 243 CLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNL------------------- 283
Query: 194 DYFITSDKVYLITGSDDFTVKVWDYETKTCVQILEGHTNNVTAVCFHPELRIIITAS--E 251
+TK VQ L+GHT+ V + HP II +A+
Sbjct: 284 -------------------------QTKEIVQKLQGHTDVVISTACHPTENIIASAALEN 318
Query: 252 DGTILIWNA 260
D TI +W +
Sbjct: 319 DKTIKLWKS 327
>pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9M|C Chain C, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9N|A Chain A, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2H9N|C Chain C, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2O9K|A Chain A, Wdr5 In Complex With Dimethylated H3k4 Peptide
pdb|2O9K|C Chain C, Wdr5 In Complex With Dimethylated H3k4 Peptide
Length = 313
Score = 99.8 bits (247), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 69/276 (25%), Positives = 125/276 (45%), Gaps = 12/276 (4%)
Query: 20 VKSVDFHPTQPWVLASLYSGTVCIWNYHSQTTEKSVKVTDSPVRTAKFVAREHWIVCGSD 79
V SV F P W+ +S + IW + EK++ + + + + +V SD
Sbjct: 27 VSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASD 86
Query: 80 DKFIRVFDYNTMASVKEFEAHEDYIRSLAVHPTFPFVLTASDDKLIKLWDWEKNWECTQT 139
DK ++++D ++ +K + H +Y+ +P +++ S D+ +++WD K +C +T
Sbjct: 87 DKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWD-VKTGKCLKT 145
Query: 140 FEGHSHYVMQSAFNPKDLNTFASASLDGTIQIWNMDSSAAKFTL-DAHEKGINCIDYFIT 198
HS V FN +D + S+S DG +IW+ S TL D ++ + + +
Sbjct: 146 LPAHSDPVSAVHFN-RDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKF--S 202
Query: 199 SDKVYLITGSDDFTVKVWDYETKTCVQILEGHTNNVTAVCFHPELRI-----IITASEDG 253
+ Y++ + D T+K+WDY C++ GH N C + I++ SED
Sbjct: 203 PNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNE--KYCIFANFSVTGGKWIVSGSEDN 260
Query: 254 TILIWNATTFRLQNTLSSGLERVWSIGYKKGSNQVA 289
+ IWN T + L + V S N +A
Sbjct: 261 LVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIA 296
Score = 86.7 bits (213), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 52/174 (29%), Positives = 95/174 (54%), Gaps = 6/174 (3%)
Query: 97 FEAHEDYIRSLAVHPTFPFVLTASDDKLIKLWD-WEKNWECTQTFEGHSHYVMQSAFNPK 155
H + S+ P ++ ++S DKLIK+W ++ +E +T GH + A++
Sbjct: 20 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFE--KTISGHKLGISDVAWS-S 76
Query: 156 DLNTFASASLDGTIQIWNMDSSAAKFTLDAHEKGINCIDYFITSDKVYLITGSDDFTVKV 215
D N SAS D T++IW++ S TL H + C ++ S+ +++GS D +V++
Sbjct: 77 DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSN--LIVSGSFDESVRI 134
Query: 216 WDYETKTCVQILEGHTNNVTAVCFHPELRIIITASEDGTILIWNATTFRLQNTL 269
WD +T C++ L H++ V+AV F+ + +I+++S DG IW+ + + TL
Sbjct: 135 WDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTL 188
Score = 80.1 bits (196), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 50/169 (29%), Positives = 87/169 (51%), Gaps = 13/169 (7%)
Query: 131 EKNWECTQTFEGHSHYVMQSAFNPKDLNTFASASLDGTIQIWNMDSSAAKFTLDAHEKGI 190
+ N+ T GH+ V F+P AS+S D I+IW + T+ H+ GI
Sbjct: 11 KPNYALKFTLAGHTKAVSSVKFSPNG-EWLASSSADKLIKIWGAYDGKFEKTISGHKLGI 69
Query: 191 NCIDYFITSDKVYLITGSDDFTVKVWDYETKTCVQILEGHTNNVTAVCFHPELRIIITAS 250
+ D +SD L++ SDD T+K+WD + C++ L+GH+N V F+P+ +I++ S
Sbjct: 70 S--DVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGS 127
Query: 251 EDGTILIWNATTFRLQNTLSSGLERVWSIGYKKGSNQVAFGCDNGTLIV 299
D ++ IW+ T + TL + + V ++ + + +G+LIV
Sbjct: 128 FDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNR----------DGSLIV 166
Score = 63.9 bits (154), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 58/255 (22%), Positives = 99/255 (38%), Gaps = 50/255 (19%)
Query: 11 KEFIQKSDRVKSVDFHPTQPWVLASLYSGTVCIWNYHSQTTEKSVKVTDSPVRTAKFVAR 70
K S+ V +F+P +++ + +V IW+ + K++ PV F
Sbjct: 102 KTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRD 161
Query: 71 EHWIVCGSDDKFIRVFDYNTMASVKEF-EAHEDYIRSLAVHPTFPFVLTASDDKLIKLWD 129
IV S D R++D + +K + + + P ++L A+ D +KLWD
Sbjct: 162 GSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWD 221
Query: 130 WEKNWECTQTFEGHSH--YVMQSAFNPKDLNTFASASLDGTIQIWNMDSSAAKFTLDAHE 187
+ K +C +T+ GH + Y + + F+ S S D + IWN+
Sbjct: 222 YSKG-KCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNL------------- 267
Query: 188 KGINCIDYFITSDKVYLITGSDDFTVKVWDYETKTCVQILEGHTNNVTAVCFHPELRIII 247
+TK VQ L+GHT+ V + HP II
Sbjct: 268 -------------------------------QTKEIVQKLQGHTDVVISTACHPTENIIA 296
Query: 248 TAS--EDGTILIWNA 260
+A+ D TI +W +
Sbjct: 297 SAALENDKTIKLWKS 311
>pdb|2GNQ|A Chain A, Structure Of Wdr5
Length = 336
Score = 99.4 bits (246), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 69/276 (25%), Positives = 125/276 (45%), Gaps = 12/276 (4%)
Query: 20 VKSVDFHPTQPWVLASLYSGTVCIWNYHSQTTEKSVKVTDSPVRTAKFVAREHWIVCGSD 79
V SV F P W+ +S + IW + EK++ + + + + +V SD
Sbjct: 50 VSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASD 109
Query: 80 DKFIRVFDYNTMASVKEFEAHEDYIRSLAVHPTFPFVLTASDDKLIKLWDWEKNWECTQT 139
DK ++++D ++ +K + H +Y+ +P +++ S D+ +++WD K +C +T
Sbjct: 110 DKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWD-VKTGKCLKT 168
Query: 140 FEGHSHYVMQSAFNPKDLNTFASASLDGTIQIWNMDSSAAKFTL-DAHEKGINCIDYFIT 198
HS V FN +D + S+S DG +IW+ S TL D ++ + + +
Sbjct: 169 LPAHSDPVSAVHFN-RDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKF--S 225
Query: 199 SDKVYLITGSDDFTVKVWDYETKTCVQILEGHTNNVTAVCFHPELRI-----IITASEDG 253
+ Y++ + D T+K+WDY C++ GH N C + I++ SED
Sbjct: 226 PNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNE--KYCIFANFSVTGGKWIVSGSEDN 283
Query: 254 TILIWNATTFRLQNTLSSGLERVWSIGYKKGSNQVA 289
+ IWN T + L + V S N +A
Sbjct: 284 LVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIA 319
Score = 86.7 bits (213), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 52/174 (29%), Positives = 95/174 (54%), Gaps = 6/174 (3%)
Query: 97 FEAHEDYIRSLAVHPTFPFVLTASDDKLIKLWD-WEKNWECTQTFEGHSHYVMQSAFNPK 155
H + S+ P ++ ++S DKLIK+W ++ +E +T GH + A++
Sbjct: 43 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFE--KTISGHKLGISDVAWS-S 99
Query: 156 DLNTFASASLDGTIQIWNMDSSAAKFTLDAHEKGINCIDYFITSDKVYLITGSDDFTVKV 215
D N SAS D T++IW++ S TL H + C ++ S+ +++GS D +V++
Sbjct: 100 DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSN--LIVSGSFDESVRI 157
Query: 216 WDYETKTCVQILEGHTNNVTAVCFHPELRIIITASEDGTILIWNATTFRLQNTL 269
WD +T C++ L H++ V+AV F+ + +I+++S DG IW+ + + TL
Sbjct: 158 WDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTL 211
Score = 80.5 bits (197), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 50/169 (29%), Positives = 87/169 (51%), Gaps = 13/169 (7%)
Query: 131 EKNWECTQTFEGHSHYVMQSAFNPKDLNTFASASLDGTIQIWNMDSSAAKFTLDAHEKGI 190
+ N+ T GH+ V F+P AS+S D I+IW + T+ H+ GI
Sbjct: 34 KPNYALKFTLAGHTKAVSSVKFSPNG-EWLASSSADKLIKIWGAYDGKFEKTISGHKLGI 92
Query: 191 NCIDYFITSDKVYLITGSDDFTVKVWDYETKTCVQILEGHTNNVTAVCFHPELRIIITAS 250
+ D +SD L++ SDD T+K+WD + C++ L+GH+N V F+P+ +I++ S
Sbjct: 93 S--DVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGS 150
Query: 251 EDGTILIWNATTFRLQNTLSSGLERVWSIGYKKGSNQVAFGCDNGTLIV 299
D ++ IW+ T + TL + + V ++ + + +G+LIV
Sbjct: 151 FDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNR----------DGSLIV 189
Score = 63.2 bits (152), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 57/249 (22%), Positives = 98/249 (39%), Gaps = 50/249 (20%)
Query: 17 SDRVKSVDFHPTQPWVLASLYSGTVCIWNYHSQTTEKSVKVTDSPVRTAKFVAREHWIVC 76
S+ V +F+P +++ + +V IW+ + K++ PV F IV
Sbjct: 131 SNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVS 190
Query: 77 GSDDKFIRVFDYNTMASVKEF-EAHEDYIRSLAVHPTFPFVLTASDDKLIKLWDWEKNWE 135
S D R++D + +K + + + P ++L A+ D +KLWD+ K +
Sbjct: 191 SSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKG-K 249
Query: 136 CTQTFEGHSH--YVMQSAFNPKDLNTFASASLDGTIQIWNMDSSAAKFTLDAHEKGINCI 193
C +T+ GH + Y + + F+ S S D + IWN+
Sbjct: 250 CLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNL------------------- 290
Query: 194 DYFITSDKVYLITGSDDFTVKVWDYETKTCVQILEGHTNNVTAVCFHPELRIIITAS--E 251
+TK VQ L+GHT+ V + HP II +A+
Sbjct: 291 -------------------------QTKEIVQKLQGHTDVVISTACHPTENIIASAALEN 325
Query: 252 DGTILIWNA 260
D TI +W +
Sbjct: 326 DKTIKLWKS 334
>pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL2|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL3|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
pdb|2XL3|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
Length = 334
Score = 99.4 bits (246), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 69/276 (25%), Positives = 125/276 (45%), Gaps = 12/276 (4%)
Query: 20 VKSVDFHPTQPWVLASLYSGTVCIWNYHSQTTEKSVKVTDSPVRTAKFVAREHWIVCGSD 79
V SV F P W+ +S + IW + EK++ + + + + +V SD
Sbjct: 48 VSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASD 107
Query: 80 DKFIRVFDYNTMASVKEFEAHEDYIRSLAVHPTFPFVLTASDDKLIKLWDWEKNWECTQT 139
DK ++++D ++ +K + H +Y+ +P +++ S D+ +++WD K +C +T
Sbjct: 108 DKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWD-VKTGKCLKT 166
Query: 140 FEGHSHYVMQSAFNPKDLNTFASASLDGTIQIWNMDSSAAKFTL-DAHEKGINCIDYFIT 198
HS V FN +D + S+S DG +IW+ S TL D ++ + + +
Sbjct: 167 LPAHSDPVSAVHFN-RDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKF--S 223
Query: 199 SDKVYLITGSDDFTVKVWDYETKTCVQILEGHTNNVTAVCFHPELRI-----IITASEDG 253
+ Y++ + D T+K+WDY C++ GH N C + I++ SED
Sbjct: 224 PNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNE--KYCIFANFSVTGGKWIVSGSEDN 281
Query: 254 TILIWNATTFRLQNTLSSGLERVWSIGYKKGSNQVA 289
+ IWN T + L + V S N +A
Sbjct: 282 LVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIA 317
Score = 86.3 bits (212), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 52/174 (29%), Positives = 95/174 (54%), Gaps = 6/174 (3%)
Query: 97 FEAHEDYIRSLAVHPTFPFVLTASDDKLIKLWD-WEKNWECTQTFEGHSHYVMQSAFNPK 155
H + S+ P ++ ++S DKLIK+W ++ +E +T GH + A++
Sbjct: 41 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFE--KTISGHKLGISDVAWS-S 97
Query: 156 DLNTFASASLDGTIQIWNMDSSAAKFTLDAHEKGINCIDYFITSDKVYLITGSDDFTVKV 215
D N SAS D T++IW++ S TL H + C ++ S+ +++GS D +V++
Sbjct: 98 DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSN--LIVSGSFDESVRI 155
Query: 216 WDYETKTCVQILEGHTNNVTAVCFHPELRIIITASEDGTILIWNATTFRLQNTL 269
WD +T C++ L H++ V+AV F+ + +I+++S DG IW+ + + TL
Sbjct: 156 WDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTL 209
Score = 80.5 bits (197), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 50/169 (29%), Positives = 87/169 (51%), Gaps = 13/169 (7%)
Query: 131 EKNWECTQTFEGHSHYVMQSAFNPKDLNTFASASLDGTIQIWNMDSSAAKFTLDAHEKGI 190
+ N+ T GH+ V F+P AS+S D I+IW + T+ H+ GI
Sbjct: 32 KPNYALKFTLAGHTKAVSSVKFSPNG-EWLASSSADKLIKIWGAYDGKFEKTISGHKLGI 90
Query: 191 NCIDYFITSDKVYLITGSDDFTVKVWDYETKTCVQILEGHTNNVTAVCFHPELRIIITAS 250
+ D +SD L++ SDD T+K+WD + C++ L+GH+N V F+P+ +I++ S
Sbjct: 91 S--DVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGS 148
Query: 251 EDGTILIWNATTFRLQNTLSSGLERVWSIGYKKGSNQVAFGCDNGTLIV 299
D ++ IW+ T + TL + + V ++ + + +G+LIV
Sbjct: 149 FDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNR----------DGSLIV 187
Score = 63.2 bits (152), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 57/249 (22%), Positives = 98/249 (39%), Gaps = 50/249 (20%)
Query: 17 SDRVKSVDFHPTQPWVLASLYSGTVCIWNYHSQTTEKSVKVTDSPVRTAKFVAREHWIVC 76
S+ V +F+P +++ + +V IW+ + K++ PV F IV
Sbjct: 129 SNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVS 188
Query: 77 GSDDKFIRVFDYNTMASVKEF-EAHEDYIRSLAVHPTFPFVLTASDDKLIKLWDWEKNWE 135
S D R++D + +K + + + P ++L A+ D +KLWD+ K +
Sbjct: 189 SSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKG-K 247
Query: 136 CTQTFEGHSH--YVMQSAFNPKDLNTFASASLDGTIQIWNMDSSAAKFTLDAHEKGINCI 193
C +T+ GH + Y + + F+ S S D + IWN+
Sbjct: 248 CLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNL------------------- 288
Query: 194 DYFITSDKVYLITGSDDFTVKVWDYETKTCVQILEGHTNNVTAVCFHPELRIIITAS--E 251
+TK VQ L+GHT+ V + HP II +A+
Sbjct: 289 -------------------------QTKEIVQKLQGHTDVVISTACHPTENIIASAALEN 323
Query: 252 DGTILIWNA 260
D TI +W +
Sbjct: 324 DKTIKLWKS 332
>pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1
Angstrom
pdb|2CO0|C Chain C, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 99.0 bits (245), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 69/276 (25%), Positives = 124/276 (44%), Gaps = 12/276 (4%)
Query: 20 VKSVDFHPTQPWVLASLYSGTVCIWNYHSQTTEKSVKVTDSPVRTAKFVAREHWIVCGSD 79
V SV F P W+ +S + IW + EK++ + + + + +V SD
Sbjct: 29 VSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASD 88
Query: 80 DKFIRVFDYNTMASVKEFEAHEDYIRSLAVHPTFPFVLTASDDKLIKLWDWEKNWECTQT 139
DK ++++D ++ +K + H +Y+ +P +++ S D+ +++WD K C +T
Sbjct: 89 DKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWD-VKTGMCLKT 147
Query: 140 FEGHSHYVMQSAFNPKDLNTFASASLDGTIQIWNMDSSAAKFTL-DAHEKGINCIDYFIT 198
HS V FN +D + S+S DG +IW+ S TL D ++ + + +
Sbjct: 148 LPAHSDPVSAVHFN-RDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKF--S 204
Query: 199 SDKVYLITGSDDFTVKVWDYETKTCVQILEGHTNNVTAVCFHPELRI-----IITASEDG 253
+ Y++ + D T+K+WDY C++ GH N C + I++ SED
Sbjct: 205 PNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNE--KYCIFANFSVTGGKWIVSGSEDN 262
Query: 254 TILIWNATTFRLQNTLSSGLERVWSIGYKKGSNQVA 289
+ IWN T + L + V S N +A
Sbjct: 263 MVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIA 298
Score = 86.3 bits (212), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 52/174 (29%), Positives = 95/174 (54%), Gaps = 6/174 (3%)
Query: 97 FEAHEDYIRSLAVHPTFPFVLTASDDKLIKLWD-WEKNWECTQTFEGHSHYVMQSAFNPK 155
H + S+ P ++ ++S DKLIK+W ++ +E +T GH + A++
Sbjct: 22 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFE--KTISGHKLGISDVAWS-S 78
Query: 156 DLNTFASASLDGTIQIWNMDSSAAKFTLDAHEKGINCIDYFITSDKVYLITGSDDFTVKV 215
D N SAS D T++IW++ S TL H + C ++ S+ +++GS D +V++
Sbjct: 79 DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSN--LIVSGSFDESVRI 136
Query: 216 WDYETKTCVQILEGHTNNVTAVCFHPELRIIITASEDGTILIWNATTFRLQNTL 269
WD +T C++ L H++ V+AV F+ + +I+++S DG IW+ + + TL
Sbjct: 137 WDVKTGMCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTL 190
Score = 79.0 bits (193), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 50/169 (29%), Positives = 86/169 (50%), Gaps = 13/169 (7%)
Query: 131 EKNWECTQTFEGHSHYVMQSAFNPKDLNTFASASLDGTIQIWNMDSSAAKFTLDAHEKGI 190
+ N+ T GH+ V F+P AS+S D I+IW + T+ H+ GI
Sbjct: 13 KPNYALMFTLAGHTKAVSSVKFSPNG-EWLASSSADKLIKIWGAYDGKFEKTISGHKLGI 71
Query: 191 NCIDYFITSDKVYLITGSDDFTVKVWDYETKTCVQILEGHTNNVTAVCFHPELRIIITAS 250
+ D +SD L++ SDD T+K+WD + C++ L+GH+N V F+P+ +I++ S
Sbjct: 72 S--DVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGS 129
Query: 251 EDGTILIWNATTFRLQNTLSSGLERVWSIGYKKGSNQVAFGCDNGTLIV 299
D ++ IW+ T TL + + V ++ + + +G+LIV
Sbjct: 130 FDESVRIWDVKTGMCLKTLPAHSDPVSAVHFNR----------DGSLIV 168
Score = 64.3 bits (155), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 58/255 (22%), Positives = 99/255 (38%), Gaps = 50/255 (19%)
Query: 11 KEFIQKSDRVKSVDFHPTQPWVLASLYSGTVCIWNYHSQTTEKSVKVTDSPVRTAKFVAR 70
K S+ V +F+P +++ + +V IW+ + K++ PV F
Sbjct: 104 KTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGMCLKTLPAHSDPVSAVHFNRD 163
Query: 71 EHWIVCGSDDKFIRVFDYNTMASVKEF-EAHEDYIRSLAVHPTFPFVLTASDDKLIKLWD 129
IV S D R++D + +K + + + P ++L A+ D +KLWD
Sbjct: 164 GSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWD 223
Query: 130 WEKNWECTQTFEGHSH--YVMQSAFNPKDLNTFASASLDGTIQIWNMDSSAAKFTLDAHE 187
+ K +C +T+ GH + Y + + F+ S S D + IWN+
Sbjct: 224 YSKG-KCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNMVYIWNL------------- 269
Query: 188 KGINCIDYFITSDKVYLITGSDDFTVKVWDYETKTCVQILEGHTNNVTAVCFHPELRIII 247
+TK VQ L+GHT+ V + HP II
Sbjct: 270 -------------------------------QTKEIVQKLQGHTDVVISTACHPTENIIA 298
Query: 248 TAS--EDGTILIWNA 260
+A+ D TI +W +
Sbjct: 299 SAALENDKTIKLWKS 313
>pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 96.7 bits (239), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 68/276 (24%), Positives = 123/276 (44%), Gaps = 12/276 (4%)
Query: 20 VKSVDFHPTQPWVLASLYSGTVCIWNYHSQTTEKSVKVTDSPVRTAKFVAREHWIVCGSD 79
V SV F P W+ +S + IW + EK++ + + + + +V SD
Sbjct: 29 VSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASD 88
Query: 80 DKFIRVFDYNTMASVKEFEAHEDYIRSLAVHPTFPFVLTASDDKLIKLWDWEKNWECTQT 139
DK ++++D ++ +K + H +Y+ +P +++ S D+ +++WD K C +T
Sbjct: 89 DKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWD-VKTGMCLKT 147
Query: 140 FEGHSHYVMQSAFNPKDLNTFASASLDGTIQIWNMDSSAAKFTL-DAHEKGINCIDYFIT 198
HS V FN +D + S+S DG +IW+ S TL D ++ + + +
Sbjct: 148 LPAHSDPVSAVHFN-RDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKF--S 204
Query: 199 SDKVYLITGSDDFTVKVWDYETKTCVQILEGHTNNVTAVCFHPELRI-----IITASEDG 253
+ Y++ + D +K+WDY C++ GH N C + I++ SED
Sbjct: 205 PNGKYILAATLDNDLKLWDYSKGKCLKTYTGHKNE--KYCIFANFSVTGGKWIVSGSEDN 262
Query: 254 TILIWNATTFRLQNTLSSGLERVWSIGYKKGSNQVA 289
+ IWN T + L + V S N +A
Sbjct: 263 MVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIA 298
Score = 86.3 bits (212), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 52/174 (29%), Positives = 95/174 (54%), Gaps = 6/174 (3%)
Query: 97 FEAHEDYIRSLAVHPTFPFVLTASDDKLIKLWD-WEKNWECTQTFEGHSHYVMQSAFNPK 155
H + S+ P ++ ++S DKLIK+W ++ +E +T GH + A++
Sbjct: 22 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFE--KTISGHKLGISDVAWS-S 78
Query: 156 DLNTFASASLDGTIQIWNMDSSAAKFTLDAHEKGINCIDYFITSDKVYLITGSDDFTVKV 215
D N SAS D T++IW++ S TL H + C ++ S+ +++GS D +V++
Sbjct: 79 DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSN--LIVSGSFDESVRI 136
Query: 216 WDYETKTCVQILEGHTNNVTAVCFHPELRIIITASEDGTILIWNATTFRLQNTL 269
WD +T C++ L H++ V+AV F+ + +I+++S DG IW+ + + TL
Sbjct: 137 WDVKTGMCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTL 190
Score = 79.0 bits (193), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 50/169 (29%), Positives = 86/169 (50%), Gaps = 13/169 (7%)
Query: 131 EKNWECTQTFEGHSHYVMQSAFNPKDLNTFASASLDGTIQIWNMDSSAAKFTLDAHEKGI 190
+ N+ T GH+ V F+P AS+S D I+IW + T+ H+ GI
Sbjct: 13 KPNYALMFTLAGHTKAVSSVKFSPNG-EWLASSSADKLIKIWGAYDGKFEKTISGHKLGI 71
Query: 191 NCIDYFITSDKVYLITGSDDFTVKVWDYETKTCVQILEGHTNNVTAVCFHPELRIIITAS 250
+ D +SD L++ SDD T+K+WD + C++ L+GH+N V F+P+ +I++ S
Sbjct: 72 S--DVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGS 129
Query: 251 EDGTILIWNATTFRLQNTLSSGLERVWSIGYKKGSNQVAFGCDNGTLIV 299
D ++ IW+ T TL + + V ++ + + +G+LIV
Sbjct: 130 FDESVRIWDVKTGMCLKTLPAHSDPVSAVHFNR----------DGSLIV 168
Score = 63.2 bits (152), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 58/255 (22%), Positives = 99/255 (38%), Gaps = 50/255 (19%)
Query: 11 KEFIQKSDRVKSVDFHPTQPWVLASLYSGTVCIWNYHSQTTEKSVKVTDSPVRTAKFVAR 70
K S+ V +F+P +++ + +V IW+ + K++ PV F
Sbjct: 104 KTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGMCLKTLPAHSDPVSAVHFNRD 163
Query: 71 EHWIVCGSDDKFIRVFDYNTMASVKEF-EAHEDYIRSLAVHPTFPFVLTASDDKLIKLWD 129
IV S D R++D + +K + + + P ++L A+ D +KLWD
Sbjct: 164 GSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNDLKLWD 223
Query: 130 WEKNWECTQTFEGHSH--YVMQSAFNPKDLNTFASASLDGTIQIWNMDSSAAKFTLDAHE 187
+ K +C +T+ GH + Y + + F+ S S D + IWN+
Sbjct: 224 YSKG-KCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNMVYIWNL------------- 269
Query: 188 KGINCIDYFITSDKVYLITGSDDFTVKVWDYETKTCVQILEGHTNNVTAVCFHPELRIII 247
+TK VQ L+GHT+ V + HP II
Sbjct: 270 -------------------------------QTKEIVQKLQGHTDVVISTACHPTENIIA 298
Query: 248 TAS--EDGTILIWNA 260
+A+ D TI +W +
Sbjct: 299 SAALENDKTIKLWKS 313
>pdb|2OVP|B Chain B, Structure Of The Skp1-Fbw7 Complex
pdb|2OVQ|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegc Complex
pdb|2OVR|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegn Complex
Length = 445
Score = 94.7 bits (234), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 60/207 (28%), Positives = 105/207 (50%), Gaps = 18/207 (8%)
Query: 74 IVCGSDDKFIRVFDYNTMASVKEFEAHEDYIRSLAVHPTFPFVLTASDDKLIKLWDWEKN 133
IV GSDD ++V+ T ++ H + S + +++ S D+ +K+W+ E
Sbjct: 132 IVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRDNI--IISGSTDRTLKVWNAETG 189
Query: 134 WECTQTFEGHSHYVMQSAFNPKDLNTFASASLDGTIQIWNMDSSAAKFTLDAHEKGINCI 193
EC T GH+ V + K + S S D T+++W++++ L H + C+
Sbjct: 190 -ECIHTLYGHTSTVRCMHLHEKRV---VSGSRDATLRVWDIETGQCLHVLMGHVAAVRCV 245
Query: 194 DYFITSDKVYLITGSDDFTVKVWDYETKTCVQILEGHTNNVTAVCFHPELRIIITASEDG 253
Y D +++G+ DF VKVWD ET+TC+ L+GHTN V ++ F + +++ S D
Sbjct: 246 QY----DGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQF--DGIHVVSGSLDT 299
Query: 254 TILIWNAT------TFRLQNTLSSGLE 274
+I +W+ T +L+SG+E
Sbjct: 300 SIRVWDVETGNCIHTLTGHQSLTSGME 326
Score = 94.7 bits (234), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 78/263 (29%), Positives = 124/263 (47%), Gaps = 18/263 (6%)
Query: 40 TVCIWNYHSQTTEKSVKVTDSPVRTAKFVAREHWIVCGSDDKFIRVFDYNTMASVKEFEA 99
T+ +WN + ++ S VR E +V GS D +RV+D T +
Sbjct: 180 TLKVWNAETGECIHTLYGHTSTVRCMHL--HEKRVVSGSRDATLRVWDIETGQCLHVLMG 237
Query: 100 HEDYIRSLAVHPTFPFVLTASDDKLIKLWDWEKNWECTQTFEGHSHYVMQSAFNPKDLNT 159
H +R V V++ + D ++K+WD E C T +GH++ V F D
Sbjct: 238 HVAAVR--CVQYDGRRVVSGAYDFMVKVWDPETE-TCLHTLQGHTNRVYSLQF---DGIH 291
Query: 160 FASASLDGTIQIWNMDSSAAKFTLDAHEKGINCIDYFITSDKVYLITGSDDFTVKVWDYE 219
S SLD +I++W++++ TL H+ + ++ D + L++G+ D TVK+WD +
Sbjct: 292 VVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMEL---KDNI-LVSGNADSTVKIWDIK 347
Query: 220 TKTCVQILEGHTNNVTAV-CFHPELRIIITASEDGTILIWNATT---FRLQNTLSSGLER 275
T C+Q L+G + +AV C +IT+S+DGT+ +W+ T R TL SG
Sbjct: 348 TGQCLQTLQGPNKHQSAVTCLQFNKNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSG 407
Query: 276 --VWSIGYKKGSNQVAFGCDNGT 296
VW I A G NGT
Sbjct: 408 GVVWRIRASNTKLVCAVGSRNGT 430
Score = 83.6 bits (205), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 50/204 (24%), Positives = 101/204 (49%), Gaps = 16/204 (7%)
Query: 70 REHWIVCGSDDKFIRVFDYNTMASVKEFEAHEDYIRSLAVHPTFPFVLTASDDKLIKLWD 129
R++ I+ GS D+ ++V++ T + H +R + +H V++ S D +++WD
Sbjct: 168 RDNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHE--KRVVSGSRDATLRVWD 225
Query: 130 WEKNWECTQTFEGHSHYVMQSAFNPKDLNTFASASLDGTIQIWNMDSSAAKFTLDAHEKG 189
E +C GH V ++ + + S + D +++W+ ++ TL H
Sbjct: 226 IETG-QCLHVLMGHVAAVRCVQYDGRRV---VSGAYDFMVKVWDPETETCLHTLQGHTNR 281
Query: 190 INCIDYFITSDKVYLITGSDDFTVKVWDYETKTCVQILEGHTNNVTAVCFHPELR--III 247
+ Y + D +++++GS D +++VWD ET C+ L GH + + + EL+ I++
Sbjct: 282 V----YSLQFDGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGM----ELKDNILV 333
Query: 248 TASEDGTILIWNATTFRLQNTLSS 271
+ + D T+ IW+ T + TL
Sbjct: 334 SGNADSTVKIWDIKTGQCLQTLQG 357
Score = 60.8 bits (146), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 36/124 (29%), Positives = 60/124 (48%), Gaps = 6/124 (4%)
Query: 158 NTFASASLDGTIQIWNMDSSAAKFTLDAHEKGINCIDYFITSDKVYLITGSDDFTVKVWD 217
N S S D T+++W+ + TL H G+ + +I+GS D T+KVW+
Sbjct: 130 NRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGV----WSSQMRDNIIISGSTDRTLKVWN 185
Query: 218 YETKTCVQILEGHTNNVTAVCFHPELRIIITASEDGTILIWNATTFRLQNTLSSGLERVW 277
ET C+ L GHT+ V C H + +++ S D T+ +W+ T + + L + V
Sbjct: 186 AETGECIHTLYGHTSTVR--CMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVR 243
Query: 278 SIGY 281
+ Y
Sbjct: 244 CVQY 247
Score = 30.8 bits (68), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
Query: 225 QILEGHTNNVTAVCFHPELRIIITASEDGTILIWNATTFRLQNTLSSGLERVWS 278
++L+GH ++V C I++ S+D T+ +W+A T + TL VWS
Sbjct: 112 KVLKGHDDHVIT-CLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWS 164
>pdb|3ZEY|7 Chain 7, High-resolution Cryo-electron Microscopy Structure Of The
Trypanosoma Brucei Ribosome
Length = 318
Score = 92.0 bits (227), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 50/179 (27%), Positives = 91/179 (50%), Gaps = 3/179 (1%)
Query: 95 KEFEAHEDYIRSLAVHPTFPFVLTASDDKLIKLWDWEKNWECTQTFEGHSHYVMQSAFNP 154
+ E H ++ +A+ F ++AS D ++LW+ + N +C F GH+ V+ AF+P
Sbjct: 61 RRLEGHSAFVSDVALSNNGNFAVSASWDHSLRLWNLQ-NGQCQYKFLGHTKDVLSVAFSP 119
Query: 155 KDLNTFASASLDGTIQIWNMDSSAAK-FTLDAHEKGINCIDYFITSDKVYLITGSDDFTV 213
D S D +++WN+ + AH ++C+ + + D +++G D V
Sbjct: 120 -DNRQIVSGGRDNALRVWNVKGECMHTLSRGAHTDWVSCVRFSPSLDAPVIVSGGWDNLV 178
Query: 214 KVWDYETKTCVQILEGHTNNVTAVCFHPELRIIITASEDGTILIWNATTFRLQNTLSSG 272
KVWD T V L+GHTN VT+V P+ + ++ +DG +W+ T + +++G
Sbjct: 179 KVWDLATGRLVTDLKGHTNYVTSVTVSPDGSLCASSDKDGVARLWDLTKGEALSEMAAG 237
Score = 52.8 bits (125), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 47/223 (21%), Positives = 90/223 (40%), Gaps = 24/223 (10%)
Query: 8 QIEKEFIQKSDRVKSVDFHPTQPWVLASLYSGTVCIWNYHSQTTEKSVK---------VT 58
Q + +F+ + V SV F P +++ + +WN + + V
Sbjct: 100 QCQYKFLGHTKDVLSVAFSPDNRQIVSGGRDNALRVWNVKGECMHTLSRGAHTDWVSCVR 159
Query: 59 DSPVRTAKFVAREHWIVCGSDDKFIRVFDYNTMASVKEFEAHEDYIRSLAVHPTFPFVLT 118
SP A IV G D ++V+D T V + + H +Y+ S+ V P +
Sbjct: 160 FSPSLDAPV------IVSGGWDNLVKVWDLATGRLVTDLKGHTNYVTSVTVSPDGSLCAS 213
Query: 119 ASDDKLIKLWDWEKNWECTQTFEGHSHYVMQSAFNPKDLNTFASASLDGTIQIWNMDSSA 178
+ D + +LWD K ++ G + Q F+P + A+ + I+I+++++
Sbjct: 214 SDKDGVARLWDLTKGEALSEMAAGAP--INQICFSPN--RYWMCAATEKGIRIFDLENKD 269
Query: 179 AKFTLDAHEKG-----INCIDYFITSDKVYLITGSDDFTVKVW 216
L +G C+ ++D L +G D ++VW
Sbjct: 270 IIVELAPEHQGSKKIVPECVSIAWSADGSTLYSGYTDNVIRVW 312
Score = 44.7 bits (104), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 34/182 (18%), Positives = 71/182 (39%), Gaps = 8/182 (4%)
Query: 75 VCGSDDKFIRVFDYNTMASVKEFEAHEDYIRSLAVHPTFPFVLTASDDKLIKLWDWEKNW 134
V S D +R+++ +F H + S+A P +++ D +++W+ +
Sbjct: 83 VSASWDHSLRLWNLQNGQCQYKFLGHTKDVLSVAFSPDNRQIVSGGRDNALRVWNVKG-- 140
Query: 135 ECTQTFE--GHSHYVMQSAFNPK-DLNTFASASLDGTIQIWNMDSSAAKFTLDAHEKGIN 191
EC T H+ +V F+P D S D +++W++ + L H +
Sbjct: 141 ECMHTLSRGAHTDWVSCVRFSPSLDAPVIVSGGWDNLVKVWDLATGRLVTDLKGHTNYVT 200
Query: 192 CIDYFITSDKVYLITGSDDFTVKVWDYETKTCVQILEGHTNNVTAVCFHPELRIIITASE 251
+ ++ D + D ++WD + + + +CF P + A+E
Sbjct: 201 SVT--VSPDGSLCASSDKDGVARLWDLTKGEALSEMAAGA-PINQICFSPNRYWMCAATE 257
Query: 252 DG 253
G
Sbjct: 258 KG 259
Score = 29.3 bits (64), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 18/73 (24%), Positives = 32/73 (43%)
Query: 227 LEGHTNNVTAVCFHPELRIIITASEDGTILIWNATTFRLQNTLSSGLERVWSIGYKKGSN 286
LEGH+ V+ V ++AS D ++ +WN + Q + V S+ + +
Sbjct: 63 LEGHSAFVSDVALSNNGNFAVSASWDHSLRLWNLQNGQCQYKFLGHTKDVLSVAFSPDNR 122
Query: 287 QVAFGCDNGTLIV 299
Q+ G + L V
Sbjct: 123 QIVSGGRDNALRV 135
>pdb|1P22|A Chain A, Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex:
Destruction Motif Binding And Lysine Specificity On The
Scfbeta-Trcp1 Ubiquitin Ligase
Length = 435
Score = 91.3 bits (225), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 64/230 (27%), Positives = 116/230 (50%), Gaps = 15/230 (6%)
Query: 32 VLASLYSGTVCIWNYHSQTTEKSVKVTDSPVRTAKFVAREHWIVCGSDDKFIRVFDYNTM 91
+++ L T+ IW+ ++ ++ + V ++ E I+ GS D +RV+D NT
Sbjct: 146 IVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQY--DERVIITGSSDSTVRVWDVNTG 203
Query: 92 ASVKEFEAHEDYIRSLAVHPTFPFVLTASDDKLIKLWDWEKNWECT--QTFEGHSHYVMQ 149
+ H + + L + ++T S D+ I +WD + T + GH V
Sbjct: 204 EMLNTLIHHCEAVLHLRFNNGM--MVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNV 261
Query: 150 SAFNPKDLNTFASASLDGTIQIWNMDSSAAKFTLDAHEKGINCIDYFITSDKVYLITGSD 209
F+ K SAS D TI++WN + TL+ H++GI C+ Y D++ +++GS
Sbjct: 262 VDFDDK---YIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQY---RDRL-VVSGSS 314
Query: 210 DFTVKVWDYETKTCVQILEGHTNNVTAVCFHPELRIIITASEDGTILIWN 259
D T+++WD E C+++LEGH V + F + + I++ + DG I +W+
Sbjct: 315 DNTIRLWDIECGACLRVLEGHEELVRCIRF--DNKRIVSGAYDGKIKVWD 362
Score = 65.9 bits (159), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 35/97 (36%), Positives = 53/97 (54%), Gaps = 6/97 (6%)
Query: 188 KGINCIDYFITSDKVYLITGSDDFTVKVWDYETKTCVQILEGHTNNVTAVCFHPELRIII 247
KG+ C+ Y D +++G D T+K+WD T C +IL GHT +V +C + R+II
Sbjct: 134 KGVYCLQY----DDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSV--LCLQYDERVII 187
Query: 248 TASEDGTILIWNATTFRLQNTLSSGLERVWSIGYKKG 284
T S D T+ +W+ T + NTL E V + + G
Sbjct: 188 TGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNNG 224
Score = 60.5 bits (145), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 51/190 (26%), Positives = 84/190 (44%), Gaps = 21/190 (11%)
Query: 131 EKNWECTQTFEGHSHYVMQSAFN----PKDLNTFASASLDGTIQIWNMDSSAAKFTLDAH 186
E NW C + H +++ D S D TI+IW+ ++ K L H
Sbjct: 113 ESNWRCGRHSLQRIHCRSETSKGVYCLQYDDQKIVSGLRDNTIKIWDKNTLECKRILTGH 172
Query: 187 EKGINCIDYFITSDKVYLITGSDDFTVKVWDYETKTCVQILEGHTNNVTAVCFHPELRII 246
+ C+ Y D+ +ITGS D TV+VWD T + L H V + F+ + +
Sbjct: 173 TGSVLCLQY----DERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNNGM--M 226
Query: 247 ITASEDGTILIWNATTFRLQNTLSSGLERVWSIGYKKGSNQVAFG-----CDNGTLIVKI 301
+T S+D +I +W+ + + L RV +G++ N V F +G +K+
Sbjct: 227 VTCSKDRSIAVWD-----MASPTDITLRRVL-VGHRAAVNVVDFDDKYIVSASGDRTIKV 280
Query: 302 GNSSGCDSVN 311
N+S C+ V
Sbjct: 281 WNTSTCEFVR 290
>pdb|3IZ6|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into
A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s
Ribosome
Length = 380
Score = 85.1 bits (209), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 65/276 (23%), Positives = 117/276 (42%), Gaps = 22/276 (7%)
Query: 4 PLELQIEKEFIQKSDRVKSVDFHPTQPWVLASLYSGTVCIWNYHSQTTEKSVKVTDSPVR 63
P +L + S +V S+D+ P + W++++ G + +WN + ++K+ V
Sbjct: 53 PTDLVCCRTLQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTHAIKLHCPWVM 112
Query: 64 TAKFVAREHWIVCGSDDKFIRVFDYNT-------MASVKEFEAHEDYIRSLAVHP-TFPF 115
F + CG D +F+ ++ M + H+ Y S P
Sbjct: 113 ECAFAPNGQSVACGGLDSACSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETR 172
Query: 116 VLTASDDKLIKLWDWEKNWEC----TQTFEGHSHYVMQSAFNPKDLNTFASASLDGTIQI 171
++T S D+ LWD ++ GH+ V+ + N + N F S S D T+++
Sbjct: 173 LITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSLNANMFISGSCDTTVRL 232
Query: 172 WNMD-SSAAKFTLDAHEKGINCIDYFITSDKVYLITGSDDFTVKVWDYETKTCVQILEGH 230
W++ +S A T HE IN + +F D TGSDD T +++D T +Q+
Sbjct: 233 WDLRITSRAVRTYHGHEGDINSVKFF--PDGQRFGTGSDDGTCRLFDMRTGHQLQVYNRE 290
Query: 231 TNN-------VTAVCFHPELRIIITASEDGTILIWN 259
+ VT+V F R++ +G +W+
Sbjct: 291 PDRNDNELPIVTSVAFSISGRLLFAGYSNGDCYVWD 326
Score = 42.0 bits (97), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 43/158 (27%), Positives = 70/158 (44%), Gaps = 20/158 (12%)
Query: 75 VCGSDDKFIRVFDYN-TMASVKEFEAHEDYIRSLAVHPTFPFVLTASDDKLIKLWDWEKN 133
+ GS D +R++D T +V+ + HE I S+ P T SDD +L+D
Sbjct: 222 ISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTG 281
Query: 134 WECTQTF-------EGHSHYVMQSAFNPKDLNTFASASLDGTIQIWNMDSSAAKFTLD-- 184
+ Q + + V AF+ FA S +G +W D+ A+ L+
Sbjct: 282 HQ-LQVYNREPDRNDNELPIVTSVAFSISGRLLFAGYS-NGDCYVW--DTLLAEMVLNLG 337
Query: 185 ----AHEKGINCIDYFITSDKVYLITGSDDFTVKVWDY 218
+HE I+C+ ++SD L TGS D +K+W +
Sbjct: 338 TLQNSHEGRISCLG--LSSDGSALCTGSWDKNLKIWAF 373
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 28/40 (70%)
Query: 223 CVQILEGHTNNVTAVCFHPELRIIITASEDGTILIWNATT 262
C + L+GH+ V ++ + PE I++AS+DG +++WNA T
Sbjct: 58 CCRTLQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALT 97
>pdb|3OW8|A Chain A, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|B Chain B, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|C Chain C, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|D Chain D, Crystal Structure Of The Wd Repeat-Containing Protein 61
Length = 321
Score = 83.2 bits (204), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 57/210 (27%), Positives = 105/210 (50%), Gaps = 6/210 (2%)
Query: 74 IVCGSDDKFIRVFDYN--TMASVKEFEAHEDYIRSLAVHPTFPFVLTASDDKLIKLWDWE 131
+V GS D ++V+ + + E H+ + S+ + T P ++S D I+LWD E
Sbjct: 51 VVTGSLDDLVKVWKWRDERLDLQWSLEGHQLGVVSVDISHTLPIAASSSLDAHIRLWDLE 110
Query: 132 KNWECTQTFEGHSHYVMQSAFNPKDLNTFASASLDGTIQIWNMDSSAAKFTLDAHEKGIN 191
N + ++ + AF+P D A+ + G + I+ ++S +++LD K I
Sbjct: 111 -NGKQIKSIDAGPVDAWTLAFSP-DSQYLATGTHVGKVNIFGVESGKKEYSLDTRGKFIL 168
Query: 192 CIDYFITSDKVYLITGSDDFTVKVWDYETKTCVQILEGHTNNVTAVCFHPELRIIITASE 251
I Y + D YL +G+ D + ++D T + LEGH + ++ F P+ ++++TAS+
Sbjct: 169 SIAY--SPDGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASD 226
Query: 252 DGTILIWNATTFRLQNTLSSGLERVWSIGY 281
DG I I++ L TLS V ++ +
Sbjct: 227 DGYIKIYDVQHANLAGTLSGHASWVLNVAF 256
Score = 68.6 bits (166), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 56/225 (24%), Positives = 101/225 (44%), Gaps = 14/225 (6%)
Query: 3 TPLELQIEKEFIQKSDRVKSVDFHPTQPWVLA----------SLYSGTVCIWNYHSQTTE 52
+ L+ I ++ ++KS+D P W LA + G V I+ S E
Sbjct: 98 SSLDAHIRLWDLENGKQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGKKE 157
Query: 53 KSVKVTDSPVRTAKFVAREHWIVCGSDDKFIRVFDYNTMASVKEFEAHEDYIRSLAVHPT 112
S+ + + + ++ G+ D I +FD T + E H IRSL P
Sbjct: 158 YSLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPD 217
Query: 113 FPFVLTASDDKLIKLWDWEKNWECTQTFEGHSHYVMQSAFNPKDLNTFASASLDGTIQIW 172
++TASDD IK++D ++ T GH+ +V+ AF P D + F S+S D ++++W
Sbjct: 218 SQLLVTASDDGYIKIYD-VQHANLAGTLSGHASWVLNVAFCPDDTH-FVSSSSDKSVKVW 275
Query: 173 NMDSSAAKFTLDAHEKGINCIDYFITSDKVYLITGSDDFTVKVWD 217
++ + T H+ + + Y K+ ++ DD + ++D
Sbjct: 276 DVGTRTCVHTFFDHQDQVWGVKYNGNGSKI--VSVGDDQEIHIYD 318
Score = 64.3 bits (155), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 61/255 (23%), Positives = 110/255 (43%), Gaps = 6/255 (2%)
Query: 5 LELQIEKEFIQKSDRVKSVDFHPTQPWVLASLYSGTVCIWNYHSQTTEKSVKVTDSPVRT 64
L+LQ E Q V SVD T P +S + +W+ + KS+ T
Sbjct: 70 LDLQWSLEGHQLG--VVSVDISHTLPIAASSSLDAHIRLWDLENGKQIKSIDAGPVDAWT 127
Query: 65 AKFVAREHWIVCGSDDKFIRVFDYNTMASVKEFEAHEDYIRSLAVHPTFPFVLTASDDKL 124
F ++ G+ + +F + + +I S+A P ++ + + D +
Sbjct: 128 LAFSPDSQYLATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAYSPDGKYLASGAIDGI 187
Query: 125 IKLWDWEKNWECTQTFEGHSHYVMQSAFNPKDLNTFASASLDGTIQIWNMDSSAAKFTLD 184
I ++D + T EGH+ + F+P D +AS DG I+I+++ + TL
Sbjct: 188 INIFDIATG-KLLHTLEGHAMPIRSLTFSP-DSQLLVTASDDGYIKIYDVQHANLAGTLS 245
Query: 185 AHEKGINCIDYFITSDKVYLITGSDDFTVKVWDYETKTCVQILEGHTNNVTAVCFHPELR 244
H + ++ D + ++ S D +VKVWD T+TCV H + V V ++
Sbjct: 246 GHASWV--LNVAFCPDDTHFVSSSSDKSVKVWDVGTRTCVHTFFDHQDQVWGVKYNGNGS 303
Query: 245 IIITASEDGTILIWN 259
I++ +D I I++
Sbjct: 304 KIVSVGDDQEIHIYD 318
Score = 63.5 bits (153), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 53/233 (22%), Positives = 104/233 (44%), Gaps = 14/233 (6%)
Query: 80 DKFIRVFDYNTMASVKEFEAHEDYIRSLAVHPTFPFVLTASDDKLIKLWDWEKNWECTQT 139
D IR++D +K +A +LA P ++ T + + ++ E + +
Sbjct: 101 DAHIRLWDLENGKQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESG-KKEYS 159
Query: 140 FEGHSHYVMQSAFNPKDLNTFASASLDGTIQIWNMDSSAAKFTLDAHEKGINCIDYFITS 199
+ +++ A++P D AS ++DG I I+++ + TL+ H I + + +
Sbjct: 160 LDTRGKFILSIAYSP-DGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTF--SP 216
Query: 200 DKVYLITGSDDFTVKVWDYETKTCVQILEGHTNNVTAVCFHPELRIIITASEDGTILIWN 259
D L+T SDD +K++D + L GH + V V F P+ +++S D ++ +W+
Sbjct: 217 DSQLLVTASDDGYIKIYDVQHANLAGTLSGHASWVLNVAFCPDDTHFVSSSSDKSVKVWD 276
Query: 260 ATTFRLQNTLSSGLERVWSIGYKKGSNQVAFGCDNGTLIVKIGNSSGCDSVNC 312
T +T ++VW + Y NG+ IV +G+ +C
Sbjct: 277 VGTRTCVHTFFDHQDQVWGVKYNG----------NGSKIVSVGDDQEIHIYDC 319
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/141 (19%), Positives = 65/141 (46%), Gaps = 4/141 (2%)
Query: 159 TFASASLDGTIQIWNMDSSAA--KFTLDAHEKGINCIDYFITSDKVYLITGSDDFTVKVW 216
T + SLD +++W +++L+ H+ G+ +D I+ + S D +++W
Sbjct: 50 TVVTGSLDDLVKVWKWRDERLDLQWSLEGHQLGVVSVD--ISHTLPIAASSSLDAHIRLW 107
Query: 217 DYETKTCVQILEGHTNNVTAVCFHPELRIIITASEDGTILIWNATTFRLQNTLSSGLERV 276
D E ++ ++ + + F P+ + + T + G + I+ + + + +L + + +
Sbjct: 108 DLENGKQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGKKEYSLDTRGKFI 167
Query: 277 WSIGYKKGSNQVAFGCDNGTL 297
SI Y +A G +G +
Sbjct: 168 LSIAYSPDGKYLASGAIDGII 188
>pdb|2PBI|B Chain B, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
pdb|2PBI|D Chain D, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
Length = 354
Score = 82.4 bits (202), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 63/262 (24%), Positives = 110/262 (41%), Gaps = 12/262 (4%)
Query: 7 LQIEKEFIQKSDRVKSVDFHPTQPWVLASLYSGTVCIWNYHSQTTEKSVKVTDSPVRTAK 66
++ + ++V +D+ + +++S G V +W+ + E +V + + V
Sbjct: 54 MKTRRTLKGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEHAVTMPCTWVMACA 113
Query: 67 FVAREHWIVCGSDDKFIRVF------DYNTMASVKEFEAHEDYIRSLAVHPTFPFVLTAS 120
+ I CG D V+ + N A K H +Y+ + + + +LTAS
Sbjct: 114 YAPSGCAIACGGLDNKCSVYPLTFDKNENMAAKKKSVAMHTNYLSACSFTNSDMQILTAS 173
Query: 121 DDKLIKLWDWEKNWECTQTFEGHSHYVMQSAFNPKDL-NTFASASLDGTIQIWNMDSSAA 179
D LWD E + Q+F GH V+ P + NTF S D +W+M S
Sbjct: 174 GDGTCALWDVESG-QLLQSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQC 232
Query: 180 KFTLDAHEKGINCIDYFITSDKVYLITGSDDFTVKVWDYETKTCVQIL--EGHTNNVTAV 237
+ HE +N + Y+ + D +GSDD T +++D V I E ++V
Sbjct: 233 VQAFETHESDVNSVRYYPSGDA--FASGSDDATCRLYDLRADREVAIYSKESIIFGASSV 290
Query: 238 CFHPELRIIITASEDGTILIWN 259
F R++ D TI +W+
Sbjct: 291 DFSLSGRLLFAGYNDYTINVWD 312
Score = 36.6 bits (83), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 29/132 (21%), Positives = 53/132 (40%), Gaps = 4/132 (3%)
Query: 43 IWNYHSQTTEKSVKVTDSPVRTAKFVAREHWIVCGSDDKFIRVFDYNTMASVKEFEAHED 102
+W+ S ++ + +S V + ++ GSDD R++D V +
Sbjct: 224 VWDMRSGQCVQAFETHESDVNSVRYYPSGDAFASGSDDATCRLYDLRADREVAIYSKESI 283
Query: 103 YIRSLAVHPTFP--FVLTASDDKLIKLWDWEKNWECTQTFEGHSHYVMQSAFNPKDLNTF 160
+ +V + + +D I +WD K + F GH + V +P D F
Sbjct: 284 IFGASSVDFSLSGRLLFAGYNDYTINVWDVLKGSRVSILF-GHENRVSTLRVSP-DGTAF 341
Query: 161 ASASLDGTIQIW 172
S S D T+++W
Sbjct: 342 CSGSWDHTLRVW 353
Score = 33.9 bits (76), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 16/67 (23%), Positives = 36/67 (53%)
Query: 225 QILEGHTNNVTAVCFHPELRIIITASEDGTILIWNATTFRLQNTLSSGLERVWSIGYKKG 284
+ L+GH N V + + + R I+++S+DG +++W++ T ++ ++ V + Y
Sbjct: 58 RTLKGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEHAVTMPCTWVMACAYAPS 117
Query: 285 SNQVAFG 291
+A G
Sbjct: 118 GCAIACG 124
Score = 31.2 bits (69), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 34/72 (47%), Gaps = 3/72 (4%)
Query: 230 HTNNVTAVCFHPELRIIITASEDGTILIWNATTFRLQNTLSSGLERVWSIGY---KKGSN 286
HTN ++A F I+TAS DGT +W+ + +L + V + + G+
Sbjct: 153 HTNYLSACSFTNSDMQILTASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAPSETGNT 212
Query: 287 QVAFGCDNGTLI 298
V+ GCD ++
Sbjct: 213 FVSGGCDKKAMV 224
>pdb|3IZA|A Chain A, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|B Chain B, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|C Chain C, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|D Chain D, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|E Chain E, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|F Chain F, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|G Chain G, Structure Of An Apoptosome-Procaspase-9 Card Complex
Length = 1263
Score = 79.7 bits (195), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 41/123 (33%), Positives = 67/123 (54%), Gaps = 1/123 (0%)
Query: 140 FEGHSHYVMQSAFNPKDLNTFASASLDGTIQIWNMDSSAAKFTLDAHEKGINCIDYFITS 199
+ H V+ AF+ D A+ S+D ++IWN + T D H + +NC + +S
Sbjct: 659 IKAHEDEVLCCAFSTDD-RFIATCSVDKKVKIWNSMTGELVHTYDEHSEQVNCCHFTNSS 717
Query: 200 DKVYLITGSDDFTVKVWDYETKTCVQILEGHTNNVTAVCFHPELRIIITASEDGTILIWN 259
+ L TGS D +K+WD K C + GHTN+V F P+ +++ + S DGT+ +W+
Sbjct: 718 HHLLLATGSSDCFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDKLLASCSADGTLKLWD 777
Query: 260 ATT 262
AT+
Sbjct: 778 ATS 780
Score = 62.8 bits (151), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 64/270 (23%), Positives = 111/270 (41%), Gaps = 59/270 (21%)
Query: 46 YHSQTTEK--SVKVTDSPVRTAKFVAREHWIVCGSDDKFIRVFDYNTMASVKEFEAHEDY 103
+ ++T EK +K + V F + +I S DK +++++ T V ++ H +
Sbjct: 648 FKAETGEKLLEIKAHEDEVLCCAFSTDDRFIATCSVDKKVKIWNSMTGELVHTYDEHSEQ 707
Query: 104 IRSLAVHPTFPFVL--TASDDKLIKLWDWEKNWECTQTFEGHSHYVMQSAFNPKDLNTFA 161
+ + +L T S D +KLWD + EC T GH++ V F+P D A
Sbjct: 708 VNCCHFTNSSHHLLLATGSSDCFLKLWDLNQK-ECRNTMFGHTNSVNHCRFSPDD-KLLA 765
Query: 162 SASLDGTIQIWNMDSS----------------------------------------AAK- 180
S S DGT+++W+ S+ AAK
Sbjct: 766 SCSADGTLKLWDATSANERKSINVKQFFLNLEDPQEDMEVIVKCCSWSADGARIMVAAKN 825
Query: 181 --FTLDAHEKGI---------NCIDYFITSDKVYL-ITGSDDFTVKVWDYETKTCVQILE 228
F D H G+ + I Y S + +L + + V++W+ ++++ V
Sbjct: 826 KIFLFDIHTSGLLGEIHTGHHSTIQYCDFSPQNHLAVVALSQYCVELWNTDSRSKVADCR 885
Query: 229 GHTNNVTAVCFHPELRIIITASEDGTILIW 258
GH + V V F P+ +T+S+D TI +W
Sbjct: 886 GHLSWVHGVMFSPDGSSFLTSSDDQTIRLW 915
Score = 58.2 bits (139), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 42/143 (29%), Positives = 69/143 (48%), Gaps = 5/143 (3%)
Query: 76 CGSDDKFIRVFDYNTMASVKEFEAHEDYIRSLAVHPTFPFVLTASDDKLIKLWDWEKNWE 135
CG+D K ++VF T + E +AHED + A F+ T S DK +K+W+ E
Sbjct: 639 CGAD-KTLQVFKAETGEKLLEIKAHEDEVLCCAFSTDDRFIATCSVDKKVKIWN-SMTGE 696
Query: 136 CTQTFEGHSHYVMQSAF-NPKDLNTFASASLDGTIQIWNMDSSAAKFTLDAHEKGINCID 194
T++ HS V F N A+ S D +++W+++ + T+ H +N
Sbjct: 697 LVHTYDEHSEQVNCCHFTNSSHHLLLATGSSDCFLKLWDLNQKECRNTMFGHTNSVNHCR 756
Query: 195 YFITSDKVYLITGSDDFTVKVWD 217
+ + D L + S D T+K+WD
Sbjct: 757 F--SPDDKLLASCSADGTLKLWD 777
Score = 57.0 bits (136), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 39/150 (26%), Positives = 70/150 (46%), Gaps = 6/150 (4%)
Query: 116 VLTASDDKLIKLWDWEKNWECTQTFEGHSHYVMQSAFNPKDLNTFASASLDGTIQIWNMD 175
++++SDD I++W+W+ + +C GH V F + S S DGT+++WN+
Sbjct: 1024 LISSSDDAEIQVWNWQLD-KCI-FLRGHQETV--KDFRLLKNSRLLSWSFDGTVKVWNII 1079
Query: 176 SSAAKFTLDAHEKGINCIDYFITSDKVYLITGSDDFTVKVWDYETKTCVQILEGHTNNVT 235
+ + H+ + D I+ D + S D T K+W ++ + L GH V
Sbjct: 1080 TGNKEKDFVCHQGTVLSCD--ISHDATKFSSTSADKTAKIWSFDLLLPLHELRGHNGCVR 1137
Query: 236 AVCFHPELRIIITASEDGTILIWNATTFRL 265
F + ++ T ++G I IWN + L
Sbjct: 1138 CSAFSVDSTLLATGDDNGEIRIWNVSNGEL 1167
Score = 48.9 bits (115), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 50/238 (21%), Positives = 97/238 (40%), Gaps = 39/238 (16%)
Query: 60 SPVRTAKFVAREHWIVCGSDDKFIRVFDYNTMASVKEFEAHEDYIRSLAVHPTFPFVLTA 119
S ++ F + H V + +++ ++ + V + H ++ + P LT+
Sbjct: 847 STIQYCDFSPQNHLAVVALSQYCVELWNTDSRSKVADCRGHLSWVHGVMFSPDGSSFLTS 906
Query: 120 SDDKLIKLWDWEK---------NWECTQTFE----------------------GHSHYVM 148
SDD+ I+LW+ +K E F+ G Y+
Sbjct: 907 SDDQTIRLWETKKVCKNSAVMLKQEVDVVFQENEVMVLAVDHIRRLQLINGRTGQIDYLT 966
Query: 149 QSAFN----PKDLNTFASASLDGTIQIWNMDSSAAKFTLDAHEKGINCIDYFITSDKVYL 204
++ + L A +G I+I + ++ + H+K + I + T+D+ L
Sbjct: 967 EAQVSCCCLSPHLQYIAFGDENGAIEILELVNNRIFQSRFQHKKTVWHIQF--TADEKTL 1024
Query: 205 ITGSDDFTVKVWDYETKTCVQILEGHTNNVTAVCFHPELRIIITASEDGTILIWNATT 262
I+ SDD ++VW+++ C+ L GH V R +++ S DGT+ +WN T
Sbjct: 1025 ISSSDDAEIQVWNWQLDKCI-FLRGHQETVKDFRLLKNSR-LLSWSFDGTVKVWNIIT 1080
Score = 41.2 bits (95), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 57/297 (19%), Positives = 112/297 (37%), Gaps = 24/297 (8%)
Query: 17 SDRVKSVDFHPTQPWVLASLYSGTVCIWNYHSQTTEKSVKVT------DSP-------VR 63
++ V F P + + GT+ +W+ S KS+ V + P V+
Sbjct: 749 TNSVNHCRFSPDDKLLASCSADGTLKLWDATSANERKSINVKQFFLNLEDPQEDMEVIVK 808
Query: 64 TAKFVAREHWIVCGSDDKFIRVFDYNTMASVKEFE-AHEDYIRSLAVHPTFPFVLTASDD 122
+ A I+ + +K I +FD +T + E H I+ P + A
Sbjct: 809 CCSWSADGARIMVAAKNK-IFLFDIHTSGLLGEIHTGHHSTIQYCDFSPQNHLAVVALSQ 867
Query: 123 KLIKLWDWEKNWECTQTFEGHSHYVMQSAFNPKDLNTFASASLDGTIQIWNMDSSAAKFT 182
++LW+ + + GH +V F+P D ++F ++S D TI++W
Sbjct: 868 YCVELWNTDSRSKVADC-RGHLSWVHGVMFSP-DGSSFLTSSDDQTIRLWETKKVCKNSA 925
Query: 183 LDAHEKGINCIDYFITSDKVYLITGSDDFTVKVWDYETKTCVQILEGHTNNVTAVCFHPE 242
+ ++ +D ++V ++ +++ + T + E V+ C P
Sbjct: 926 VMLKQE----VDVVFQENEVMVLAVDHIRRLQLINGRTGQIDYLTEAQ---VSCCCLSPH 978
Query: 243 LRIIITASEDGTILIWNATTFRLQNTLSSGLERVWSIGYKKGSNQVAFGCDNGTLIV 299
L+ I E+G I I R+ + + VW I + + D+ + V
Sbjct: 979 LQYIAFGDENGAIEILELVNNRIFQSRFQHKKTVWHIQFTADEKTLISSSDDAEIQV 1035
Score = 32.3 bits (72), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 41/184 (22%), Positives = 72/184 (39%), Gaps = 10/184 (5%)
Query: 80 DKFIRVFDYNTMASVKEFEAHEDYIRSLAVHPTFPFVLTASDDKLIKLWDWEKNWECTQT 139
D ++V++ T K+F H+ + S + + S DK K+W ++ +
Sbjct: 1070 DGTVKVWNIITGNKEKDFVCHQGTVLSCDISHDATKFSSTSADKTAKIWSFDLLLPLHE- 1128
Query: 140 FEGHSHYVMQSAFNPKDLNTFASASLDGTIQIWNMDSS------AAKFTLDAHEKGINCI 193
GH+ V SAF+ D A+ +G I+IWN+ + A A G
Sbjct: 1129 LRGHNGCVRCSAFSV-DSTLLATGDDNGEIRIWNVSNGELLHLCAPLSEEGAATHGGWVT 1187
Query: 194 DYFITSDKVYLITGSDDFTVKVWDYETKTCVQILEGHTNNVTAVCFHPELRIIITASEDG 253
D + D LI+ +K W+ T Q + N+ + P+ + +T G
Sbjct: 1188 DLCFSPDGKMLISAGG--YIKWWNVVTGESSQTFYTNGTNLKKIHVSPDFKTYVTVDNLG 1245
Query: 254 TILI 257
+ I
Sbjct: 1246 ILYI 1249
>pdb|3MKS|B Chain B, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3MKS|D Chain D, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3V7D|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
pdb|3V7D|D Chain D, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
Length = 464
Score = 79.3 bits (194), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 57/221 (25%), Positives = 103/221 (46%), Gaps = 26/221 (11%)
Query: 71 EHWIVCGSDDKFIRVFDYNTMASVKEFEAHEDYIRSLAVHPTFPFVLTASDDKLIKLWDW 130
+++++ G+DDK IRV+D + + H+ + +L + +++ S D+ +++WD
Sbjct: 132 DNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALK-YAHGGILVSGSTDRTVRVWDI 190
Query: 131 EKNWECTQTFEGHSHYVM-QSAFNPKDLNTFASASLDGTIQIWNMDSSAA--------KF 181
+K CT FEGH+ V K++ + S D T+ +W + ++ +
Sbjct: 191 KKGC-CTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDY 249
Query: 182 TLDAHEKGINCIDYFITSDKVYL-------------ITGSDDFTVKVWDYETKTCVQILE 228
L H N YF+ + ++ ++GS D T+ VWD C+ IL
Sbjct: 250 PLVFHTPEEN--PYFVGVLRGHMASVRTVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILS 307
Query: 229 GHTNNVTAVCFHPELRIIITASEDGTILIWNATTFRLQNTL 269
GHT+ + + + E + I+AS D TI IW+ L TL
Sbjct: 308 GHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTL 348
Score = 55.8 bits (133), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 71/308 (23%), Positives = 130/308 (42%), Gaps = 64/308 (20%)
Query: 26 HPTQPWVLASLYSGTVCIWNYHSQTTEKSVKVTD--------------SPVRTAKFVARE 71
H W L + G + S +T+++V+V D S VR V +
Sbjct: 161 HDGGVWALKYAHGGILV-----SGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYK 215
Query: 72 H--WIVCGSDDKFIRVFDYNTMASVKEFEAHEDY-----------------------IRS 106
+ +IV GS D + V+ +SV + DY +R+
Sbjct: 216 NIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRT 275
Query: 107 LAVHPTFPFVLTASDDKLIKLWDWEKNWECTQTFEGHSHYVMQSAFNPKDLNTFASASLD 166
++ H V++ S D + +WD + +C GH+ + + ++ + SAS+D
Sbjct: 276 VSGHGNI--VVSGSYDNTLIVWDVAQ-MKCLYILSGHTDRIYSTIYD-HERKRCISASMD 331
Query: 167 GTIQIWNMDSSAAKFTLDAHEKGINCIDYFITSDKVYLITGSDDFTVKVW---DYETKTC 223
TI+IW++++ +TL H + + SDK +L++ + D +++ W DY K
Sbjct: 332 TTIRIWDLENGELMYTLQGHTALVGLLR---LSDK-FLVSAAADGSIRGWDANDYSRKFS 387
Query: 224 VQILEGHTNNVTAVCFHPELRIIITASEDGTILIWNATTFRL--QNTLSSGLERVWSIGY 281
HTN F+ I+++ SE+ I+N + +L N L +++WS+ +
Sbjct: 388 YH----HTNLSAITTFYVSDNILVSGSEN-QFNIYNLRSGKLVHANILKDA-DQIWSVNF 441
Query: 282 KKGSNQVA 289
KG VA
Sbjct: 442 -KGKTLVA 448
Score = 37.0 bits (84), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 41/79 (51%), Gaps = 6/79 (7%)
Query: 182 TLDAHEKG-INCIDYFITSDKVYLITGSDDFTVKVWDYETKTCVQILEGHTNNVTAVCFH 240
TL H I C+ + + Y+ITG+DD ++V+D K + L GH V A+ +
Sbjct: 116 TLRGHMTSVITCLQF----EDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKY- 170
Query: 241 PELRIIITASEDGTILIWN 259
I+++ S D T+ +W+
Sbjct: 171 AHGGILVSGSTDRTVRVWD 189
Score = 30.8 bits (68), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 26/96 (27%), Positives = 42/96 (43%), Gaps = 4/96 (4%)
Query: 200 DKVYLITGSDDFTVKVWDYETKTCVQ--ILEGHTNNVTAVCFHPELRIIITASEDGTILI 257
D++ L + F +K W Y K Q L GH +V C E +IT ++D I +
Sbjct: 89 DRLRLSFLENIFILKNW-YNPKFVPQRTTLRGHMTSVIT-CLQFEDNYVITGADDKMIRV 146
Query: 258 WNATTFRLQNTLSSGLERVWSIGYKKGSNQVAFGCD 293
+++ + LS VW++ Y G V+ D
Sbjct: 147 YDSINKKFLLQLSGHDGGVWALKYAHGGILVSGSTD 182
>pdb|1NEX|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
pdb|1NEX|D Chain D, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
Length = 464
Score = 78.2 bits (191), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 57/221 (25%), Positives = 103/221 (46%), Gaps = 26/221 (11%)
Query: 71 EHWIVCGSDDKFIRVFDYNTMASVKEFEAHEDYIRSLAVHPTFPFVLTASDDKLIKLWDW 130
+++++ G+DDK IRV+D + + H+ + +L + +++ S D+ +++WD
Sbjct: 132 DNYVITGADDKXIRVYDSINKKFLLQLSGHDGGVWALK-YAHGGILVSGSTDRTVRVWDI 190
Query: 131 EKNWECTQTFEGHSHYVM-QSAFNPKDLNTFASASLDGTIQIWNMDSSAA--------KF 181
+K CT FEGH+ V K++ + S D T+ +W + ++ +
Sbjct: 191 KKGC-CTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDY 249
Query: 182 TLDAHEKGINCIDYFITSDKVY-------------LITGSDDFTVKVWDYETKTCVQILE 228
L H N YF+ + + +++GS D T+ VWD C+ IL
Sbjct: 250 PLVFHTPEEN--PYFVGVLRGHXASVRTVSGHGNIVVSGSYDNTLIVWDVAQXKCLYILS 307
Query: 229 GHTNNVTAVCFHPELRIIITASEDGTILIWNATTFRLQNTL 269
GHT+ + + + E + I+AS D TI IW+ L TL
Sbjct: 308 GHTDRIYSTIYDHERKRCISASXDTTIRIWDLENGELXYTL 348
Score = 65.1 bits (157), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 48/190 (25%), Positives = 80/190 (42%), Gaps = 28/190 (14%)
Query: 115 FVLTASDDKLIKLWDWEKNWECTQTFEGHSHYVMQSAFNPKDLNTFASASLDGTIQIWNM 174
+V+T +DDK I+++D N + GH V A S S D T+++W++
Sbjct: 134 YVITGADDKXIRVYD-SINKKFLLQLSGHDGGVW--ALKYAHGGILVSGSTDRTVRVWDI 190
Query: 175 DSSAAKFTLDAHEKGINCIDYFITSDKVYLITGSDDFTVKVW---------------DY- 218
+ H + C+D + Y++TGS D T+ VW DY
Sbjct: 191 KKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYP 250
Query: 219 -------ETKTCVQILEGHTNNVTAVCFHPELRIIITASEDGTILIWNATTFRLQNTLSS 271
E V +L GH +V V H I+++ S D T+++W+ + LS
Sbjct: 251 LVFHTPEENPYFVGVLRGHXASVRTVSGHGN--IVVSGSYDNTLIVWDVAQXKCLYILSG 308
Query: 272 GLERVWSIGY 281
+R++S Y
Sbjct: 309 HTDRIYSTIY 318
Score = 52.8 bits (125), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 41/137 (29%), Positives = 66/137 (48%), Gaps = 7/137 (5%)
Query: 74 IVCGSDDKFIRVFDYNTMASVKEFEAHEDYIRSLAVHPTFPFVLTASDDKLIKLWDWEKN 133
+V GS D + V+D + H D I S ++AS D I++WD E N
Sbjct: 283 VVSGSYDNTLIVWDVAQXKCLYILSGHTDRIYSTIYDHERKRCISASXDTTIRIWDLE-N 341
Query: 134 WECTQTFEGHSHYVMQSAFNPKDLNTFASASLDGTIQIWNMDSSAAKFTLDAHEKGINCI 193
E T +GH+ V + K L SA+ DG+I+ W+ + + KF+ H ++ I
Sbjct: 342 GELXYTLQGHTALVGLLRLSDKFL---VSAAADGSIRGWDANDYSRKFSY--HHTNLSAI 396
Query: 194 DYFITSDKVYLITGSDD 210
F SD + L++GS++
Sbjct: 397 TTFYVSDNI-LVSGSEN 412
Score = 37.4 bits (85), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 41/79 (51%), Gaps = 6/79 (7%)
Query: 182 TLDAHEKG-INCIDYFITSDKVYLITGSDDFTVKVWDYETKTCVQILEGHTNNVTAVCFH 240
TL H I C+ + + Y+ITG+DD ++V+D K + L GH V A+ +
Sbjct: 116 TLRGHXTSVITCLQF----EDNYVITGADDKXIRVYDSINKKFLLQLSGHDGGVWALKY- 170
Query: 241 PELRIIITASEDGTILIWN 259
I+++ S D T+ +W+
Sbjct: 171 AHGGILVSGSTDRTVRVWD 189
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 26/96 (27%), Positives = 42/96 (43%), Gaps = 4/96 (4%)
Query: 200 DKVYLITGSDDFTVKVWDYETKTCVQ--ILEGHTNNVTAVCFHPELRIIITASEDGTILI 257
D++ L + F +K W Y K Q L GH +V C E +IT ++D I +
Sbjct: 89 DRLRLSFLENIFILKNW-YNPKFVPQRTTLRGHXTSVIT-CLQFEDNYVITGADDKXIRV 146
Query: 258 WNATTFRLQNTLSSGLERVWSIGYKKGSNQVAFGCD 293
+++ + LS VW++ Y G V+ D
Sbjct: 147 YDSINKKFLLQLSGHDGGVWALKYAHGGILVSGSTD 182
>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1
Length = 1249
Score = 77.8 bits (190), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 39/123 (31%), Positives = 66/123 (53%), Gaps = 1/123 (0%)
Query: 140 FEGHSHYVMQSAFNPKDLNTFASASLDGTIQIWNMDSSAAKFTLDAHEKGINCIDYFITS 199
+ H V+ AF+ D + A+ S D ++IW+ + T D H + +NC + S
Sbjct: 653 IKAHEDEVLCCAFSSDD-SYIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKS 711
Query: 200 DKVYLITGSDDFTVKVWDYETKTCVQILEGHTNNVTAVCFHPELRIIITASEDGTILIWN 259
+ + L TGS+DF +K+WD K C + GHTN+V F P+ ++ + S DGT+ +W+
Sbjct: 712 NHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWD 771
Query: 260 ATT 262
+
Sbjct: 772 VRS 774
Score = 66.2 bits (160), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 66/271 (24%), Positives = 111/271 (40%), Gaps = 61/271 (22%)
Query: 46 YHSQTTEK--SVKVTDSPVRTAKFVAREHWIVCGSDDKFIRVFDYNTMASVKEFEAHEDY 103
+ ++T EK +K + V F + + +I S DK ++++D T V ++ H +
Sbjct: 642 FKAETGEKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSATGKLVHTYDEHSEQ 701
Query: 104 IRS--LAVHPTFPFVLTASDDKLIKLWDWEKNWECTQTFEGHSHYVMQSAFNPKDLNTFA 161
+ + T S+D +KLWD + EC T GH++ V F+P D A
Sbjct: 702 VNCCHFTNKSNHLLLATGSNDFFLKLWDLNQK-ECRNTMFGHTNSVNHCRFSPDD-ELLA 759
Query: 162 SASLDGTIQIWNMDSS----------------------------------------AAK- 180
S S DGT+++W++ S+ AAK
Sbjct: 760 SCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKN 819
Query: 181 --FTLDAHEKGI---------NCIDY--FITSDKVYLITGSDDFTVKVWDYETKTCVQIL 227
D H G+ + I Y F D + +I S + V++W+ +++ V
Sbjct: 820 KVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYDHLAVIALSQ-YCVELWNIDSRLKVADC 878
Query: 228 EGHTNNVTAVCFHPELRIIITASEDGTILIW 258
GH + V V F P+ +TAS+D TI +W
Sbjct: 879 RGHLSWVHGVMFSPDGSSFLTASDDQTIRVW 909
Score = 61.6 bits (148), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 41/193 (21%), Positives = 85/193 (44%), Gaps = 6/193 (3%)
Query: 73 WIVCGSDDKFIRVFDYNTMASVKEFEAHEDYIRSLAVHPTFPFVLTASDDKLIKLWDWEK 132
++ G +D I++ + H+ +R + ++++S+D +I++W
Sbjct: 975 YVAFGDEDGAIKIIELPNNRVFSSGVGHKKAVRHIQFTADGKTLISSSEDSVIQVW---- 1030
Query: 133 NWECTQTFEGHSHYVMQSAFNPKDLNTFASASLDGTIQIWNMDSSAAKFTLDAHEKGINC 192
NW+ +H F + S S DGT+++WN+ + + H+ +
Sbjct: 1031 NWQTGDYVFLQAHQETVKDFRLLQDSRLLSWSFDGTVKVWNVITGRIERDFTCHQGTV-- 1088
Query: 193 IDYFITSDKVYLITGSDDFTVKVWDYETKTCVQILEGHTNNVTAVCFHPELRIIITASED 252
+ I+SD + S D T K+W ++ + + L+GH V F + ++ T ++
Sbjct: 1089 LSCAISSDATKFSSTSADKTAKIWSFDLLSPLHELKGHNGCVRCSAFSLDGILLATGDDN 1148
Query: 253 GTILIWNATTFRL 265
G I IWN + +L
Sbjct: 1149 GEIRIWNVSDGQL 1161
Score = 60.1 bits (144), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 55/215 (25%), Positives = 101/215 (46%), Gaps = 27/215 (12%)
Query: 62 VRTAKFVAREHWIVCGSDDKFIRVFDYNTMASVKEFEAHEDYIRSLAVHPTFPFVLTASD 121
VR +F A ++ S+D I+V+++ T V +AH++ ++ + +L+ S
Sbjct: 1006 VRHIQFTADGKTLISSSEDSVIQVWNWQTGDYVF-LQAHQETVKDFRLLQD-SRLLSWSF 1063
Query: 122 DKLIKLWD-----WEKNWECTQTFEGHSHYVMQSAFNPKDLNTFASASLDGTIQIWNMDS 176
D +K+W+ E+++ C H V+ A + D F+S S D T +IW+ D
Sbjct: 1064 DGTVKVWNVITGRIERDFTC------HQGTVLSCAIS-SDATKFSSTSADKTAKIWSFDL 1116
Query: 177 SAAKFTLDAHEKGINCIDYFITSDKVYLITGSDDFTVKVWDYE----TKTC--VQILEG- 229
+ L H + C + + D + L TG D+ +++W+ +C + + EG
Sbjct: 1117 LSPLHELKGHNGCVRCSAFSL--DGILLATGDDNGEIRIWNVSDGQLLHSCAPISVEEGT 1174
Query: 230 --HTNNVTAVCFHPELRIIITASEDGTILIWNATT 262
H VT VCF P+ + +++A G + WN T
Sbjct: 1175 ATHGGWVTDVCFSPDSKTLVSAG--GYLKWWNVAT 1207
Score = 56.2 bits (134), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 39/146 (26%), Positives = 71/146 (48%), Gaps = 5/146 (3%)
Query: 76 CGSDDKFIRVFDYNTMASVKEFEAHEDYIRSLAVHPTFPFVLTASDDKLIKLWDWEKNWE 135
CG+D K ++VF T + + +AHED + A ++ T S DK +K+WD +
Sbjct: 633 CGAD-KTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWD-SATGK 690
Query: 136 CTQTFEGHSHYVMQSAF-NPKDLNTFASASLDGTIQIWNMDSSAAKFTLDAHEKGINCID 194
T++ HS V F N + A+ S D +++W+++ + T+ H +N
Sbjct: 691 LVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCR 750
Query: 195 YFITSDKVYLITGSDDFTVKVWDYET 220
+ + D L + S D T+++WD +
Sbjct: 751 F--SPDDELLASCSADGTLRLWDVRS 774
Score = 52.4 bits (124), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 69/308 (22%), Positives = 119/308 (38%), Gaps = 38/308 (12%)
Query: 17 SDRVKSVDFHPTQPWVLASLYSGTVCIWNYHSQTTEKSVKVT-------DSP------VR 63
++ V F P + + GT+ +W+ S KS+ V D P V+
Sbjct: 743 TNSVNHCRFSPDDELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVK 802
Query: 64 TAKFVAREHWIVCGSDDKFIRVFDYNTMASVKEFE-AHEDYIRSLAVHPTFPFVLTASDD 122
+ A I+ + +K + +FD +T + E H I+ P + A
Sbjct: 803 CCSWSADGDKIIVAAKNKVL-LFDIHTSGLLAEIHTGHHSTIQYCDFSPYDHLAVIALSQ 861
Query: 123 KLIKLWDWEKNWECTQTFEGHSHYVMQSAFNPKDLNTFASASLDGTIQIWNMDSSAAKFT 182
++LW+ + + GH +V F+P D ++F +AS D TI++W
Sbjct: 862 YCVELWNIDSRLKVADC-RGHLSWVHGVMFSP-DGSSFLTASDDQTIRVWETKKVCKNSA 919
Query: 183 LDAHEKGINCIDYFITSDKVYLITGSDDFTVKVWDYETKTCVQILEGHTNNVTAVCFHPE 242
+ ++ ID ++ ++ + +++ +T + E V+ C P
Sbjct: 920 IVLKQE----IDVVFQENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQ---VSCCCLSPH 972
Query: 243 LRIIITASEDGTILIWNATTFRLQNTLSSGLERVWSIGYKKGSNQVAFGCDNGTLIVKIG 302
L + EDG I I R+ SSG +G+KK + F D TLI
Sbjct: 973 LEYVAFGDEDGAIKIIELPNNRV---FSSG------VGHKKAVRHIQFTADGKTLI---- 1019
Query: 303 NSSGCDSV 310
SS DSV
Sbjct: 1020 -SSSEDSV 1026
>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length
Murine Apaf-1
Length = 1256
Score = 77.8 bits (190), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 43/147 (29%), Positives = 76/147 (51%), Gaps = 2/147 (1%)
Query: 116 VLTASDDKLIKLWDWEKNWECTQTFEGHSHYVMQSAFNPKDLNTFASASLDGTIQIWNMD 175
+ + DK ++++ E E + H V+ AF+ D + A+ S D ++IW+
Sbjct: 637 IASCGADKTLQVFKAETG-EKLLDIKAHEDEVLCCAFSSDD-SYIATCSADKKVKIWDSA 694
Query: 176 SSAAKFTLDAHEKGINCIDYFITSDKVYLITGSDDFTVKVWDYETKTCVQILEGHTNNVT 235
+ T D H + +NC + S+ + L TGS+DF +K+WD K C + GHTN+V
Sbjct: 695 TGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVN 754
Query: 236 AVCFHPELRIIITASEDGTILIWNATT 262
F P+ ++ + S DGT+ +W+ +
Sbjct: 755 HCRFSPDDELLASCSADGTLRLWDVRS 781
Score = 66.2 bits (160), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 66/271 (24%), Positives = 111/271 (40%), Gaps = 61/271 (22%)
Query: 46 YHSQTTEK--SVKVTDSPVRTAKFVAREHWIVCGSDDKFIRVFDYNTMASVKEFEAHEDY 103
+ ++T EK +K + V F + + +I S DK ++++D T V ++ H +
Sbjct: 649 FKAETGEKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSATGKLVHTYDEHSEQ 708
Query: 104 IRS--LAVHPTFPFVLTASDDKLIKLWDWEKNWECTQTFEGHSHYVMQSAFNPKDLNTFA 161
+ + T S+D +KLWD + EC T GH++ V F+P D A
Sbjct: 709 VNCCHFTNKSNHLLLATGSNDFFLKLWDLNQK-ECRNTMFGHTNSVNHCRFSPDD-ELLA 766
Query: 162 SASLDGTIQIWNMDSS----------------------------------------AAK- 180
S S DGT+++W++ S+ AAK
Sbjct: 767 SCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKN 826
Query: 181 --FTLDAHEKGI---------NCIDY--FITSDKVYLITGSDDFTVKVWDYETKTCVQIL 227
D H G+ + I Y F D + +I S + V++W+ +++ V
Sbjct: 827 KVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYDHLAVIALSQ-YCVELWNIDSRLKVADC 885
Query: 228 EGHTNNVTAVCFHPELRIIITASEDGTILIW 258
GH + V V F P+ +TAS+D TI +W
Sbjct: 886 RGHLSWVHGVMFSPDGSSFLTASDDQTIRVW 916
Score = 61.6 bits (148), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 41/193 (21%), Positives = 85/193 (44%), Gaps = 6/193 (3%)
Query: 73 WIVCGSDDKFIRVFDYNTMASVKEFEAHEDYIRSLAVHPTFPFVLTASDDKLIKLWDWEK 132
++ G +D I++ + H+ +R + ++++S+D +I++W
Sbjct: 982 YVAFGDEDGAIKIIELPNNRVFSSGVGHKKAVRHIQFTADGKTLISSSEDSVIQVW---- 1037
Query: 133 NWECTQTFEGHSHYVMQSAFNPKDLNTFASASLDGTIQIWNMDSSAAKFTLDAHEKGINC 192
NW+ +H F + S S DGT+++WN+ + + H+ +
Sbjct: 1038 NWQTGDYVFLQAHQETVKDFRLLQDSRLLSWSFDGTVKVWNVITGRIERDFTCHQGTV-- 1095
Query: 193 IDYFITSDKVYLITGSDDFTVKVWDYETKTCVQILEGHTNNVTAVCFHPELRIIITASED 252
+ I+SD + S D T K+W ++ + + L+GH V F + ++ T ++
Sbjct: 1096 LSCAISSDATKFSSTSADKTAKIWSFDLLSPLHELKGHNGCVRCSAFSLDGILLATGDDN 1155
Query: 253 GTILIWNATTFRL 265
G I IWN + +L
Sbjct: 1156 GEIRIWNVSDGQL 1168
Score = 60.1 bits (144), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 55/215 (25%), Positives = 101/215 (46%), Gaps = 27/215 (12%)
Query: 62 VRTAKFVAREHWIVCGSDDKFIRVFDYNTMASVKEFEAHEDYIRSLAVHPTFPFVLTASD 121
VR +F A ++ S+D I+V+++ T V +AH++ ++ + +L+ S
Sbjct: 1013 VRHIQFTADGKTLISSSEDSVIQVWNWQTGDYVF-LQAHQETVKDFRLLQD-SRLLSWSF 1070
Query: 122 DKLIKLWD-----WEKNWECTQTFEGHSHYVMQSAFNPKDLNTFASASLDGTIQIWNMDS 176
D +K+W+ E+++ C H V+ A + D F+S S D T +IW+ D
Sbjct: 1071 DGTVKVWNVITGRIERDFTC------HQGTVLSCAIS-SDATKFSSTSADKTAKIWSFDL 1123
Query: 177 SAAKFTLDAHEKGINCIDYFITSDKVYLITGSDDFTVKVWDYE----TKTC--VQILEG- 229
+ L H + C + + D + L TG D+ +++W+ +C + + EG
Sbjct: 1124 LSPLHELKGHNGCVRCSAFSL--DGILLATGDDNGEIRIWNVSDGQLLHSCAPISVEEGT 1181
Query: 230 --HTNNVTAVCFHPELRIIITASEDGTILIWNATT 262
H VT VCF P+ + +++A G + WN T
Sbjct: 1182 ATHGGWVTDVCFSPDSKTLVSAG--GYLKWWNVAT 1214
Score = 56.2 bits (134), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 39/146 (26%), Positives = 71/146 (48%), Gaps = 5/146 (3%)
Query: 76 CGSDDKFIRVFDYNTMASVKEFEAHEDYIRSLAVHPTFPFVLTASDDKLIKLWDWEKNWE 135
CG+D K ++VF T + + +AHED + A ++ T S DK +K+WD +
Sbjct: 640 CGAD-KTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWD-SATGK 697
Query: 136 CTQTFEGHSHYVMQSAF-NPKDLNTFASASLDGTIQIWNMDSSAAKFTLDAHEKGINCID 194
T++ HS V F N + A+ S D +++W+++ + T+ H +N
Sbjct: 698 LVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCR 757
Query: 195 YFITSDKVYLITGSDDFTVKVWDYET 220
+ + D L + S D T+++WD +
Sbjct: 758 F--SPDDELLASCSADGTLRLWDVRS 781
Score = 52.4 bits (124), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 69/308 (22%), Positives = 119/308 (38%), Gaps = 38/308 (12%)
Query: 17 SDRVKSVDFHPTQPWVLASLYSGTVCIWNYHSQTTEKSVKVT-------DSP------VR 63
++ V F P + + GT+ +W+ S KS+ V D P V+
Sbjct: 750 TNSVNHCRFSPDDELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVK 809
Query: 64 TAKFVAREHWIVCGSDDKFIRVFDYNTMASVKEFE-AHEDYIRSLAVHPTFPFVLTASDD 122
+ A I+ + +K + +FD +T + E H I+ P + A
Sbjct: 810 CCSWSADGDKIIVAAKNKVL-LFDIHTSGLLAEIHTGHHSTIQYCDFSPYDHLAVIALSQ 868
Query: 123 KLIKLWDWEKNWECTQTFEGHSHYVMQSAFNPKDLNTFASASLDGTIQIWNMDSSAAKFT 182
++LW+ + + GH +V F+P D ++F +AS D TI++W
Sbjct: 869 YCVELWNIDSRLKVADC-RGHLSWVHGVMFSP-DGSSFLTASDDQTIRVWETKKVCKNSA 926
Query: 183 LDAHEKGINCIDYFITSDKVYLITGSDDFTVKVWDYETKTCVQILEGHTNNVTAVCFHPE 242
+ ++ ID ++ ++ + +++ +T + E V+ C P
Sbjct: 927 IVLKQE----IDVVFQENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQ---VSCCCLSPH 979
Query: 243 LRIIITASEDGTILIWNATTFRLQNTLSSGLERVWSIGYKKGSNQVAFGCDNGTLIVKIG 302
L + EDG I I R+ SSG +G+KK + F D TLI
Sbjct: 980 LEYVAFGDEDGAIKIIELPNNRV---FSSG------VGHKKAVRHIQFTADGKTLI---- 1026
Query: 303 NSSGCDSV 310
SS DSV
Sbjct: 1027 -SSSEDSV 1033
>pdb|3FM0|A Chain A, Crystal Structure Of Wd40 Protein Ciao1
Length = 345
Score = 75.1 bits (183), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 58/202 (28%), Positives = 95/202 (47%), Gaps = 12/202 (5%)
Query: 107 LAVHPTFPFVLTASDDKLIKLWDWEKN-WECTQTF-EGHSHYVMQSAFNPKDLNTFASAS 164
LA +P + + D+ I++W E + W C EGH V + A++P N ASAS
Sbjct: 22 LAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCG-NYLASAS 80
Query: 165 LDGTIQIW--NMDSSAAKFTLDAHEKGINCIDYFITSDKVYLITGSDDFTVKVWDYETK- 221
D T IW N D TL+ HE + + + + + L T S D +V VW+ + +
Sbjct: 81 FDATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGN--LLATCSRDKSVWVWEVDEED 138
Query: 222 --TCVQILEGHTNNVTAVCFHPELRIIITASEDGTILIWNATT--FRLQNTLSSGLERVW 277
CV +L HT +V V +HP ++ +AS D T+ ++ + TL VW
Sbjct: 139 EYECVSVLNSHTQDVKHVVWHPSQELLASASYDDTVKLYREEEDDWVCCATLEGHESTVW 198
Query: 278 SIGYKKGSNQVAFGCDNGTLIV 299
S+ + ++A D+ T+ +
Sbjct: 199 SLAFDPSGQRLASCSDDRTVRI 220
Score = 65.9 bits (159), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 53/195 (27%), Positives = 94/195 (48%), Gaps = 17/195 (8%)
Query: 76 CGSDDKFIRVFDYNTMASVKEF---EAHEDYIRSLAVHPTFPFVLTASDDKLIKLWDWEK 132
CG D + IR++ + + + E H+ +R +A P ++ +AS D +W +K
Sbjct: 34 CGGD-RRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASFDATTCIW--KK 90
Query: 133 N---WECTQTFEGHSHYVMQSAFNPKDLNTFASASLDGTIQIWNMDSS---AAKFTLDAH 186
N +EC T EGH + V A+ P N A+ S D ++ +W +D L++H
Sbjct: 91 NQDDFECVTTLEGHENEVKSVAWAPSG-NLLATCSRDKSVWVWEVDEEDEYECVSVLNSH 149
Query: 187 EKGINCIDYFITSDKVYLITGSDDFTVKVWDYETK--TCVQILEGHTNNVTAVCFHPELR 244
+ + + + + + L + S D TVK++ E C LEGH + V ++ F P +
Sbjct: 150 TQDVKHVVWHPSQE--LLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQ 207
Query: 245 IIITASEDGTILIWN 259
+ + S+D T+ IW
Sbjct: 208 RLASCSDDRTVRIWR 222
Score = 61.2 bits (147), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 60/276 (21%), Positives = 118/276 (42%), Gaps = 45/276 (16%)
Query: 20 VKSVDFHPTQPWVLASLYSGTVCIWNYHSQTTE--KSVKVTDSPVRTAKFVAREHWIVCG 77
V+ V + P ++ ++ + T CIW + E +++ ++ V++ + + +
Sbjct: 64 VRKVAWSPCGNYLASASFDATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATC 123
Query: 78 SDDKFIRVFDY---NTMASVKEFEAHEDYIRSLAVHPTFPFVLTASDDKLIKLW-DWEKN 133
S DK + V++ + V +H ++ + HP+ + +AS D +KL+ + E +
Sbjct: 124 SRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHPSQELLASASYDDTVKLYREEEDD 183
Query: 134 WECTQTFEGHSHYVMQSAFNPKDLNTFASASLDGTIQIWNMDSSAAKFTLDAHEKGINCI 193
W C T EGH V AF+P AS S D T++IW + L +E+G+ C
Sbjct: 184 WVCCATLEGHESTVWSLAFDPSG-QRLASCSDDRTVRIW-------RQYLPGNEQGVACS 235
Query: 194 DYFIT-----------SDKVY----------LITGSDDFTVKVWDYETKTCVQ------- 225
+ S +Y L T D ++V+ + + Q
Sbjct: 236 GSDPSWKCICTLSGFHSRTIYDIAWCQLTGALATACGDDAIRVFQEDPNSDPQQPTFSLT 295
Query: 226 --ILEGHTNNVTAVCFHP-ELRIIITASEDGTILIW 258
+ + H+ +V V ++P E ++ + S+DG + W
Sbjct: 296 AHLHQAHSQDVNCVAWNPKEPGLLASCSDDGEVAFW 331
Score = 57.8 bits (138), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 48/183 (26%), Positives = 81/183 (44%), Gaps = 14/183 (7%)
Query: 94 VKEFEAHEDYIRSLAVHPTFPFVLTASDDKLIKLW--DWEKNWECTQTFEGHSHYVMQSA 151
V E HE+ ++S+A P+ + T S DK + +W D E +EC H+ V
Sbjct: 98 VTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVV 157
Query: 152 FNPKDLNTFASASLDGTIQIWN--MDSSAAKFTLDAHEKGINCIDYFITSDKVYLITGSD 209
++P ASAS D T++++ D TL+ HE + + + + + L + SD
Sbjct: 158 WHPSQ-ELLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQR--LASCSD 214
Query: 210 DFTVKVWDYETKTCVQILEGHTNNVTAVCFHPELRIIITASEDGTILIWNATTFRLQNTL 269
D TV++W Q L G+ V P + I T S + I++ +L L
Sbjct: 215 DRTVRIWR-------QYLPGNEQGVACSGSDPSWKCICTLSGFHSRTIYDIAWCQLTGAL 267
Query: 270 SSG 272
++
Sbjct: 268 ATA 270
Score = 48.9 bits (115), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 51/231 (22%), Positives = 95/231 (41%), Gaps = 31/231 (13%)
Query: 18 DRVKSVDFHPTQPWVLASLYSGTVCIWNYHSQTTEKSVKVTDSPVRTAKFV---AREHWI 74
+ VKSV + P+ + +V +W + + V V +S + K V + +
Sbjct: 106 NEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHPSQELL 165
Query: 75 VCGSDDKFIRVF--DYNTMASVKEFEAHEDYIRSLAVHPTFPFVLTASDDKLIKLWDW-- 130
S D ++++ + + E HE + SLA P+ + + SDD+ +++W
Sbjct: 166 ASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIWRQYL 225
Query: 131 ------------EKNWECTQTFEG-HSHYVMQSAFNPKDLNTFASASLDGTIQIW----N 173
+ +W+C T G HS + A+ + A+A D I+++ N
Sbjct: 226 PGNEQGVACSGSDPSWKCICTLSGFHSRTIYDIAWC-QLTGALATACGDDAIRVFQEDPN 284
Query: 174 MDSSAAKFTL-----DAHEKGINCIDYFITSDKVYLITGSDDFTVKVWDYE 219
D F+L AH + +NC+ + + L + SDD V W Y+
Sbjct: 285 SDPQQPTFSLTAHLHQAHSQDVNCVAWN-PKEPGLLASCSDDGEVAFWKYQ 334
>pdb|3DM0|A Chain A, Maltose Binding Protein Fusion With Rack1 From A. Thaliana
Length = 694
Score = 74.3 bits (181), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 53/195 (27%), Positives = 91/195 (46%), Gaps = 12/195 (6%)
Query: 74 IVCGSDDKFIRVF-----DYNTMASVKEFEAHEDYIRSLAVHPTFPFVLTASDDKLIKLW 128
IV S DK I ++ D + + H ++ + + F L+ S D ++LW
Sbjct: 398 IVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDGQFALSGSWDGELRLW 457
Query: 129 DWEKNWECTQTFEGHSHYVMQSAFNPKDLNTFASASLDGTIQIWNMDSSAAKFTL----D 184
D T+ F GH+ V+ AF+ D SAS D TI++WN K+T+ +
Sbjct: 458 DLAAG-VSTRRFVGHTKDVLSVAFS-LDNRQIVSASRDRTIKLWNT-LGECKYTISEGGE 514
Query: 185 AHEKGINCIDYFITSDKVYLITGSDDFTVKVWDYETKTCVQILEGHTNNVTAVCFHPELR 244
H ++C+ + + + +++ S D TVKVW+ L GHT V+ V P+
Sbjct: 515 GHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGS 574
Query: 245 IIITASEDGTILIWN 259
+ + +DG +L+W+
Sbjct: 575 LCASGGKDGVVLLWD 589
Score = 70.1 bits (170), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 68/286 (23%), Positives = 124/286 (43%), Gaps = 31/286 (10%)
Query: 10 EKEFIQKSDRVKSVDFHPTQPWVLASLYSGTVCIWNYHSQTTEKSVKVTDSPVRTAKFVA 69
++ S V+ V + L+ + G + +W+ + + + V + F
Sbjct: 423 QRRLTGHSHFVEDVVLSSDGQFALSGSWDGELRLWDLAAGVSTRRFVGHTKDVLSVAFSL 482
Query: 70 REHWIVCGSDDKFIRVFDYNTMASVK-----EFEAHEDYIRSLAVHPTF--PFVLTASDD 122
IV S D+ I++ +NT+ K E H D++ + P P +++AS D
Sbjct: 483 DNRQIVSASRDRTIKL--WNTLGECKYTISEGGEGHRDWVSCVRFSPNTLQPTIVSASWD 540
Query: 123 KLIKLWDWEKNWECTQTFEGHSHYVMQSAFNPKDLNTFASASLDGTIQIWNMDSSAAKFT 182
K +K+W+ N + T GH+ YV A +P D + AS DG + +W++ ++
Sbjct: 541 KTVKVWNLS-NCKLRSTLAGHTGYVSTVAVSP-DGSLCASGGKDGVVLLWDLAEGKKLYS 598
Query: 183 LDAHEKGINCIDYFITSDKVYLITGSDDFTVKVWDYETKTCVQIL--------EGHTNNV 234
L+A+ + I S Y + + + +K+WD E+K+ V+ L E N+
Sbjct: 599 LEAN----SVIHALCFSPNRYWLCAATEHGIKIWDLESKSIVEDLKVDLKAEAEKADNSG 654
Query: 235 TAVCFHPELRIIITASEDGTILIWNATTFRLQNTLSSGLERVWSIG 280
A + ++I S L W+A L + + G+ RVW IG
Sbjct: 655 PAAT---KRKVIYCTS-----LNWSADGSTLFSGYTDGVIRVWGIG 692
Score = 57.4 bits (137), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 43/141 (30%), Positives = 68/141 (48%), Gaps = 8/141 (5%)
Query: 139 TFEGHSHYVMQSAFNPKDLNTFASASLDGTIQIWNM--DSSA---AKFTLDAHEKGINCI 193
T H+ V A + + SAS D +I +W + D A A+ L H +
Sbjct: 377 TMRAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVE-- 434
Query: 194 DYFITSDKVYLITGSDDFTVKVWDYETKTCVQILEGHTNNVTAVCFHPELRIIITASEDG 253
D ++SD + ++GS D +++WD + GHT +V +V F + R I++AS D
Sbjct: 435 DVVLSSDGQFALSGSWDGELRLWDLAAGVSTRRFVGHTKDVLSVAFSLDNRQIVSASRDR 494
Query: 254 TILIWNATTFRLQNTLSSGLE 274
TI +WN T + T+S G E
Sbjct: 495 TIKLWN-TLGECKYTISEGGE 514
>pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|B Chain B, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|C Chain C, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
Length = 393
Score = 74.3 bits (181), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 58/242 (23%), Positives = 107/242 (44%), Gaps = 19/242 (7%)
Query: 62 VRTAKFVAREHWIVCGSDDKFIRVFDYNTMASVKEFEAHEDYIRSLAVHPTFPFVLTASD 121
+R+ F ++ G++D+ IR++D V + HE I SL P+ +++ S
Sbjct: 126 IRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSG 185
Query: 122 DKLIKLWDWEKNWECTQTFEGHSHYVMQSAFNPKDLNTFASASLDGTIQIWNMDSSAAKF 181
D+ +++WD + +C+ T V A +P D A+ SLD +++W+ ++
Sbjct: 186 DRTVRIWDL-RTGQCSLTLSIEDG-VTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVE 243
Query: 182 TLDA-HEKGINCID----YFITSDKVYLITGSDDFTVKVWDYE------------TKTCV 224
LD+ +E G D T D +++GS D +VK+W+ + + TC
Sbjct: 244 RLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCE 303
Query: 225 QILEGHTNNVTAVCFHPELRIIITASEDGTILIWNATTFRLQNTLSSGLERVWSIGYKKG 284
GH + V +V I++ S+D +L W+ + L V S+ G
Sbjct: 304 VTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANG 363
Query: 285 SN 286
S+
Sbjct: 364 SS 365
Score = 73.2 bits (178), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 58/262 (22%), Positives = 111/262 (42%), Gaps = 25/262 (9%)
Query: 20 VKSVDFHPTQPWVLASLYSGTVCIWNYHSQTTEKSVKVTDSPVRTAKFVAREHWIVCGSD 79
++SV F P ++ + IW+ ++ ++ + + + + +V GS
Sbjct: 126 IRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSG 185
Query: 80 DKFIRVFDYNTMASVKEFEAHEDYIRSLAVHPT-FPFVLTASDDKLIKLWDWEKNWEC-- 136
D+ +R++D T ED + ++AV P ++ S D+ +++WD E +
Sbjct: 186 DRTVRIWDLRTGQCSLTLSI-EDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVER 244
Query: 137 ----TQTFEGHSHYVMQSAFNPKDLNTFASASLDGTIQIWNMDSSAAKFTLDAHEKGINC 192
++ GH V F +D + S SLD ++++WN+ ++ K G
Sbjct: 245 LDSENESGTGHKDSVYSVVFT-RDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCE 303
Query: 193 IDYF----------ITSDKVYLITGSDDFTVKVWDYETKTCVQILEGHTNNVTAVC---- 238
+ Y T + Y+++GS D V WD ++ + +L+GH N+V +V
Sbjct: 304 VTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANG 363
Query: 239 --FHPELRIIITASEDGTILIW 258
PE + T S D IW
Sbjct: 364 SSLGPEYNVFATGSGDCKARIW 385
Score = 53.9 bits (128), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 47/222 (21%), Positives = 88/222 (39%), Gaps = 23/222 (10%)
Query: 20 VKSVDFHPTQPWVLASLYSGTVCIWNYHSQTTEKSVKVTDSPVRTAKFVAREHWIVCGSD 79
+ S+D+ P+ +++ TV IW+ + ++ + D A +I GS
Sbjct: 168 IYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSL 227
Query: 80 DKFIRVFDYNTMASVKEFEA-------HEDYIRSLAVHPTFPFVLTASDDKLIKLWDWE- 131
D+ +RV+D T V+ ++ H+D + S+ V++ S D+ +KLW+ +
Sbjct: 228 DRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQN 287
Query: 132 ----------KNWECTQTFEGHSHYVMQSAFNPKDLNTFASASLDGTIQIWNMDSSAAKF 181
+ C T+ GH +V+ A D S S D + W+ S
Sbjct: 288 ANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQND-EYILSGSKDRGVLFWDKKSGNPLL 346
Query: 182 TLDAHEKGINCIDYF----ITSDKVYLITGSDDFTVKVWDYE 219
L H + + + + TGS D ++W Y+
Sbjct: 347 MLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWKYK 388
Score = 53.5 bits (127), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 53/101 (52%), Gaps = 5/101 (4%)
Query: 175 DSSAAKFTLDAHEKGINCIDYFITS-----DKVYLITGSDDFTVKVWDYETKTCVQILEG 229
DS+A K + + D +I S D +L TG++D +++WD E + V IL+G
Sbjct: 104 DSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQG 163
Query: 230 HTNNVTAVCFHPELRIIITASEDGTILIWNATTFRLQNTLS 270
H ++ ++ + P +++ S D T+ IW+ T + TLS
Sbjct: 164 HEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLS 204
Score = 34.7 bits (78), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 15/66 (22%), Positives = 34/66 (51%)
Query: 234 VTAVCFHPELRIIITASEDGTILIWNATTFRLQNTLSSGLERVWSIGYKKGSNQVAFGCD 293
+ +VCF P+ + + T +ED I IW+ ++ L + ++S+ Y +++ G
Sbjct: 126 IRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSG 185
Query: 294 NGTLIV 299
+ T+ +
Sbjct: 186 DRTVRI 191
>pdb|1A0R|B Chain B, Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-Gamma
Length = 340
Score = 73.6 bits (179), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 65/267 (24%), Positives = 113/267 (42%), Gaps = 13/267 (4%)
Query: 32 VLASLYSGTVCIWNYHSQTTEKSVKVTDSPVRTAKFVAREHWIVCGSDDKFIRVFDYNTM 91
+L++ G + IW+ ++ ++ + S V T + +++ CG D +++ T
Sbjct: 70 LLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTR 129
Query: 92 AS----VKEFEAHEDYIRSLAVHPTFPFVLTASDDKLIKLWDWEKNWECTQTFEGHSHYV 147
+E H Y+ S ++T+S D LWD E + T TF GH+ V
Sbjct: 130 EGNVRVSRELAGHTGYL-SCCRFLDDNQIVTSSGDTTCALWDIETGQQ-TTTFTGHTGDV 187
Query: 148 MQSAFNPKDLNTFASASLDGTIQIWNMDSSAAKFTLDAHEKGINCIDYFITSDKVYLITG 207
M + P D F S + D + ++W++ + T HE IN I +F + TG
Sbjct: 188 MSLSLAP-DTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNA--FATG 244
Query: 208 SDDFTVKVWDYETKTCVQILEGHTN---NVTAVCFHPELRIIITASEDGTILIWNATTFR 264
SDD T +++D + H N +T+V F R+++ +D +W+A
Sbjct: 245 SDDATCRLFDLRADQELMTYS-HDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKAD 303
Query: 265 LQNTLSSGLERVWSIGYKKGSNQVAFG 291
L+ RV +G VA G
Sbjct: 304 RAGVLAGHDNRVSCLGVTDDGMAVATG 330
Score = 71.2 bits (173), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 63/251 (25%), Positives = 106/251 (42%), Gaps = 13/251 (5%)
Query: 16 KSDRVKSVDFHPTQPWVLASLYSGTVCIWNYHSQTTEKSVKVTDSPVRTAKFVA-----R 70
+S V + + P+ +V I+N +T E +V+V+ +++
Sbjct: 96 RSSWVMTCAYAPSGNYVACGGLDNICSIYNL--KTREGNVRVSRELAGHTGYLSCCRFLD 153
Query: 71 EHWIVCGSDDKFIRVFDYNTMASVKEFEAHEDYIRSLAVHPTFPFVLTASDDKLIKLWDW 130
++ IV S D ++D T F H + SL++ P ++ + D KLWD
Sbjct: 154 DNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDV 213
Query: 131 EKNWECTQTFEGHSHYVMQSAFNPKDLNTFASASLDGTIQIWNM--DSSAAKFTLDAHEK 188
+ C QTF GH + F P N FA+ S D T +++++ D ++ D
Sbjct: 214 REGM-CRQTFTGHESDINAICFFPNG-NAFATGSDDATCRLFDLRADQELMTYSHDNIIC 271
Query: 189 GINCIDYFITSDKVYLITGSDDFTVKVWDYETKTCVQILEGHTNNVTAVCFHPELRIIIT 248
GI + + + L+ G DDF VWD +L GH N V+ + + + T
Sbjct: 272 GITSVSF--SKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVAT 329
Query: 249 ASEDGTILIWN 259
S D + IWN
Sbjct: 330 GSWDSFLKIWN 340
Score = 65.1 bits (157), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 43/197 (21%), Positives = 84/197 (42%), Gaps = 13/197 (6%)
Query: 72 HW------IVCGSDDKFIRVFDYNTMASVKEFEAHEDYIRSLAVHPTFPFVLTASDDKLI 125
HW ++ S D + ++D T V ++ + A P+ +V D +
Sbjct: 62 HWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNIC 121
Query: 126 KLWDW---EKNWECTQTFEGHSHYVMQSAFNPKDLNTFASASLDGTIQIWNMDSSAAKFT 182
+++ E N ++ GH+ Y+ F D N ++S D T +W++++ T
Sbjct: 122 SIYNLKTREGNVRVSRELAGHTGYLSCCRF--LDDNQIVTSSGDTTCALWDIETGQQTTT 179
Query: 183 LDAHEKGINCIDYFITSDKVYLITGSDDFTVKVWDYETKTCVQILEGHTNNVTAVCFHPE 242
H + + + D ++G+ D + K+WD C Q GH +++ A+CF P
Sbjct: 180 FTGHTGDV--MSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPN 237
Query: 243 LRIIITASEDGTILIWN 259
T S+D T +++
Sbjct: 238 GNAFATGSDDATCRLFD 254
Score = 56.2 bits (134), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 47/210 (22%), Positives = 84/210 (40%), Gaps = 9/210 (4%)
Query: 91 MASVKEFEAHEDYIRSLAVHPTFPFVLTASDDKLIKLWDWEKNWECTQTFEGHSHYVMQS 150
M + + H I ++ +L+AS D + +WD + S +VM
Sbjct: 45 MRTRRTLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNK-VHAIPLRSSWVMTC 103
Query: 151 AFNPKDLNTFASASLDGTIQIWNMDSSAAKFT----LDAHEKGINCIDYFITSDKVYLIT 206
A+ P N A LD I+N+ + L H ++C + D ++T
Sbjct: 104 AYAPSG-NYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFL---DDNQIVT 159
Query: 207 GSDDFTVKVWDYETKTCVQILEGHTNNVTAVCFHPELRIIITASEDGTILIWNATTFRLQ 266
S D T +WD ET GHT +V ++ P+ R+ ++ + D + +W+ +
Sbjct: 160 SSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCR 219
Query: 267 NTLSSGLERVWSIGYKKGSNQVAFGCDNGT 296
T + + +I + N A G D+ T
Sbjct: 220 QTFTGHESDINAICFFPNGNAFATGSDDAT 249
>pdb|1GOT|B Chain B, Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimera And
The Gt-Beta-Gamma Subunits
pdb|2TRC|B Chain B, PhosducinTRANSDUCIN BETA-Gamma Complex
pdb|1B9X|A Chain A, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin
pdb|1B9Y|A Chain A, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin Beta-Gamma
Length = 340
Score = 73.6 bits (179), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 65/267 (24%), Positives = 113/267 (42%), Gaps = 13/267 (4%)
Query: 32 VLASLYSGTVCIWNYHSQTTEKSVKVTDSPVRTAKFVAREHWIVCGSDDKFIRVFDYNTM 91
+L++ G + IW+ ++ ++ + S V T + +++ CG D +++ T
Sbjct: 70 LLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTR 129
Query: 92 AS----VKEFEAHEDYIRSLAVHPTFPFVLTASDDKLIKLWDWEKNWECTQTFEGHSHYV 147
+E H Y+ S ++T+S D LWD E + T TF GH+ V
Sbjct: 130 EGNVRVSRELAGHTGYL-SCCRFLDDNQIVTSSGDTTCALWDIETGQQ-TTTFTGHTGDV 187
Query: 148 MQSAFNPKDLNTFASASLDGTIQIWNMDSSAAKFTLDAHEKGINCIDYFITSDKVYLITG 207
M + P D F S + D + ++W++ + T HE IN I +F + TG
Sbjct: 188 MSLSLAP-DTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNA--FATG 244
Query: 208 SDDFTVKVWDYETKTCVQILEGHTN---NVTAVCFHPELRIIITASEDGTILIWNATTFR 264
SDD T +++D + H N +T+V F R+++ +D +W+A
Sbjct: 245 SDDATCRLFDLRADQELMTYS-HDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKAD 303
Query: 265 LQNTLSSGLERVWSIGYKKGSNQVAFG 291
L+ RV +G VA G
Sbjct: 304 RAGVLAGHDNRVSCLGVTDDGMAVATG 330
Score = 71.2 bits (173), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 63/251 (25%), Positives = 106/251 (42%), Gaps = 13/251 (5%)
Query: 16 KSDRVKSVDFHPTQPWVLASLYSGTVCIWNYHSQTTEKSVKVTDSPVRTAKFVA-----R 70
+S V + + P+ +V I+N +T E +V+V+ +++
Sbjct: 96 RSSWVMTCAYAPSGNYVACGGLDNICSIYNL--KTREGNVRVSRELAGHTGYLSCCRFLD 153
Query: 71 EHWIVCGSDDKFIRVFDYNTMASVKEFEAHEDYIRSLAVHPTFPFVLTASDDKLIKLWDW 130
++ IV S D ++D T F H + SL++ P ++ + D KLWD
Sbjct: 154 DNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDV 213
Query: 131 EKNWECTQTFEGHSHYVMQSAFNPKDLNTFASASLDGTIQIWNM--DSSAAKFTLDAHEK 188
+ C QTF GH + F P N FA+ S D T +++++ D ++ D
Sbjct: 214 REGM-CRQTFTGHESDINAICFFPNG-NAFATGSDDATCRLFDLRADQELMTYSHDNIIC 271
Query: 189 GINCIDYFITSDKVYLITGSDDFTVKVWDYETKTCVQILEGHTNNVTAVCFHPELRIIIT 248
GI + + + L+ G DDF VWD +L GH N V+ + + + T
Sbjct: 272 GITSVSF--SKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVAT 329
Query: 249 ASEDGTILIWN 259
S D + IWN
Sbjct: 330 GSWDSFLKIWN 340
Score = 65.1 bits (157), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 43/197 (21%), Positives = 84/197 (42%), Gaps = 13/197 (6%)
Query: 72 HW------IVCGSDDKFIRVFDYNTMASVKEFEAHEDYIRSLAVHPTFPFVLTASDDKLI 125
HW ++ S D + ++D T V ++ + A P+ +V D +
Sbjct: 62 HWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNIC 121
Query: 126 KLWDW---EKNWECTQTFEGHSHYVMQSAFNPKDLNTFASASLDGTIQIWNMDSSAAKFT 182
+++ E N ++ GH+ Y+ F D N ++S D T +W++++ T
Sbjct: 122 SIYNLKTREGNVRVSRELAGHTGYLSCCRF--LDDNQIVTSSGDTTCALWDIETGQQTTT 179
Query: 183 LDAHEKGINCIDYFITSDKVYLITGSDDFTVKVWDYETKTCVQILEGHTNNVTAVCFHPE 242
H + + + D ++G+ D + K+WD C Q GH +++ A+CF P
Sbjct: 180 FTGHTGDV--MSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPN 237
Query: 243 LRIIITASEDGTILIWN 259
T S+D T +++
Sbjct: 238 GNAFATGSDDATCRLFD 254
Score = 56.6 bits (135), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 47/210 (22%), Positives = 84/210 (40%), Gaps = 9/210 (4%)
Query: 91 MASVKEFEAHEDYIRSLAVHPTFPFVLTASDDKLIKLWDWEKNWECTQTFEGHSHYVMQS 150
M + + H I ++ +L+AS D + +WD + S +VM
Sbjct: 45 MRTRRTLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNK-VHAIPLRSSWVMTC 103
Query: 151 AFNPKDLNTFASASLDGTIQIWNMDSSAAKFT----LDAHEKGINCIDYFITSDKVYLIT 206
A+ P N A LD I+N+ + L H ++C + D ++T
Sbjct: 104 AYAPSG-NYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFL---DDNQIVT 159
Query: 207 GSDDFTVKVWDYETKTCVQILEGHTNNVTAVCFHPELRIIITASEDGTILIWNATTFRLQ 266
S D T +WD ET GHT +V ++ P+ R+ ++ + D + +W+ +
Sbjct: 160 SSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCR 219
Query: 267 NTLSSGLERVWSIGYKKGSNQVAFGCDNGT 296
T + + +I + N A G D+ T
Sbjct: 220 QTFTGHESDINAICFFPNGNAFATGSDDAT 249
>pdb|1TRJ|A Chain A, Homology Model Of Yeast Rack1 Protein Fitted Into 11.7a
Cryo-em Map Of Yeast 80s Ribosome
Length = 314
Score = 72.8 bits (177), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 56/213 (26%), Positives = 93/213 (43%), Gaps = 16/213 (7%)
Query: 73 WIVCGSDDKFIRVFDYNTMASVKEFEAHEDYIRSLAVHPTFPFVLTASDDKLIKLWDWEK 132
W + G D KF V+ F+ H ++ + + L+AS DK ++LWD
Sbjct: 45 WKLTGDDQKF--------GVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVAT 96
Query: 133 NWECTQTFEGHSHYVMQSAFNPKDLNTFASASLDGTIQIWNMDSSAAKFTLDAHEKGINC 192
E Q F GH VM + K + S S D TI++W + TL H ++
Sbjct: 97 G-ETYQRFVGHKSDVMSVDIDKK-ASMIISGSRDKTIKVWTIKGQCLA-TLLGHNDWVSQ 153
Query: 193 IDYFITS----DKVYLITGSDDFTVKVWDYETKTCVQILEGHTNNVTAVCFHPELRIIIT 248
+ D V +I+ +D VK W+ GH +N+ + P+ +I +
Sbjct: 154 VRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIAS 213
Query: 249 ASEDGTILIWNATTFRLQNTLSSGLERVWSIGY 281
A +DG I++WN + TLS+ + V+S+ +
Sbjct: 214 AGKDGEIMLWNLAAKKAMYTLSA-QDEVFSLAF 245
Score = 60.8 bits (146), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 40/123 (32%), Positives = 61/123 (49%), Gaps = 3/123 (2%)
Query: 139 TFEGHSHYVMQSAFNPKDLNTFASASLDGTIQIWNMDSSAAKFTLDAHE-KGINCI--DY 195
T EGH+ +V A + N SAS D T+ W + KF + KG + I D
Sbjct: 12 TLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDC 71
Query: 196 FITSDKVYLITGSDDFTVKVWDYETKTCVQILEGHTNNVTAVCFHPELRIIITASEDGTI 255
+T+D Y ++ S D T+++WD T Q GH ++V +V + +II+ S D TI
Sbjct: 72 TLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTI 131
Query: 256 LIW 258
+W
Sbjct: 132 KVW 134
Score = 32.0 bits (71), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 25/131 (19%), Positives = 53/131 (40%), Gaps = 10/131 (7%)
Query: 6 ELQIEKEFIQKSDRVKSVDFHPTQPWVLASLYSGTVCIWNYHSQTTEKSVKVTDSPVRTA 65
+ QIE +FI + + ++ P + ++ G + +WN ++ ++ D V +
Sbjct: 185 QFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQDE-VFSL 243
Query: 66 KFVAREHWIVCGSDDKFIRVFDYNTMASVKEF--------EAHEDYIRSLAVHPTFPFVL 117
F +W+ + I+VF + V + +A E + SLA +
Sbjct: 244 AFSPNRYWLAAATATG-IKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLF 302
Query: 118 TASDDKLIKLW 128
D +I++W
Sbjct: 303 AGYTDNVIRVW 313
>pdb|3JYV|R Chain R, Structure Of The 40s Rrna And Proteins And PE TRNA FOR
EUKARYOTIC Ribosome Based On Cryo-Em Map Of Thermomyces
Lanuginosus Ribosome At 8.9a Resolution
Length = 313
Score = 72.8 bits (177), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 56/213 (26%), Positives = 93/213 (43%), Gaps = 16/213 (7%)
Query: 73 WIVCGSDDKFIRVFDYNTMASVKEFEAHEDYIRSLAVHPTFPFVLTASDDKLIKLWDWEK 132
W + G D KF V+ F+ H ++ + + L+AS DK ++LWD
Sbjct: 39 WKLTGDDQKF--------GVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVAT 90
Query: 133 NWECTQTFEGHSHYVMQSAFNPKDLNTFASASLDGTIQIWNMDSSAAKFTLDAHEKGINC 192
E Q F GH VM + K + S S D TI++W + TL H ++
Sbjct: 91 G-ETYQRFVGHKSDVMSVDIDKK-ASMIISGSRDKTIKVWTIKGQCLA-TLLGHNDWVSQ 147
Query: 193 IDYFITS----DKVYLITGSDDFTVKVWDYETKTCVQILEGHTNNVTAVCFHPELRIIIT 248
+ D V +I+ +D VK W+ GH +N+ + P+ +I +
Sbjct: 148 VRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIAS 207
Query: 249 ASEDGTILIWNATTFRLQNTLSSGLERVWSIGY 281
A +DG I++WN + TLS+ + V+S+ +
Sbjct: 208 AGKDGEIMLWNLAAKKAMYTLSA-QDEVFSLAF 239
Score = 60.8 bits (146), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 40/123 (32%), Positives = 61/123 (49%), Gaps = 3/123 (2%)
Query: 139 TFEGHSHYVMQSAFNPKDLNTFASASLDGTIQIWNMDSSAAKFTLDAHE-KGINCI--DY 195
T EGH+ +V A + N SAS D T+ W + KF + KG + I D
Sbjct: 6 TLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDC 65
Query: 196 FITSDKVYLITGSDDFTVKVWDYETKTCVQILEGHTNNVTAVCFHPELRIIITASEDGTI 255
+T+D Y ++ S D T+++WD T Q GH ++V +V + +II+ S D TI
Sbjct: 66 TLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTI 125
Query: 256 LIW 258
+W
Sbjct: 126 KVW 128
Score = 32.0 bits (71), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 25/131 (19%), Positives = 53/131 (40%), Gaps = 10/131 (7%)
Query: 6 ELQIEKEFIQKSDRVKSVDFHPTQPWVLASLYSGTVCIWNYHSQTTEKSVKVTDSPVRTA 65
+ QIE +FI + + ++ P + ++ G + +WN ++ ++ D V +
Sbjct: 179 QFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQDE-VFSL 237
Query: 66 KFVAREHWIVCGSDDKFIRVFDYNTMASVKEF--------EAHEDYIRSLAVHPTFPFVL 117
F +W+ + I+VF + V + +A E + SLA +
Sbjct: 238 AFSPNRYWLAAATATG-IKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLF 296
Query: 118 TASDDKLIKLW 128
D +I++W
Sbjct: 297 AGYTDNVIRVW 307
>pdb|3RFG|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P63
pdb|3RFG|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P63
Length = 319
Score = 72.8 bits (177), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 56/213 (26%), Positives = 93/213 (43%), Gaps = 16/213 (7%)
Query: 73 WIVCGSDDKFIRVFDYNTMASVKEFEAHEDYIRSLAVHPTFPFVLTASDDKLIKLWDWEK 132
W + G D KF V+ F+ H ++ + + L+AS DK ++LWD
Sbjct: 45 WKLTGDDQKF--------GVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVAT 96
Query: 133 NWECTQTFEGHSHYVMQSAFNPKDLNTFASASLDGTIQIWNMDSSAAKFTLDAHEKGINC 192
E Q F GH VM + K + S S D TI++W + TL H ++
Sbjct: 97 G-ETYQRFVGHKSDVMSVDIDKK-ASMIISGSRDKTIKVWTIKGQCLA-TLLGHNDWVSQ 153
Query: 193 IDYFITS----DKVYLITGSDDFTVKVWDYETKTCVQILEGHTNNVTAVCFHPELRIIIT 248
+ D V +I+ +D VK W+ GH +N+ + P+ +I +
Sbjct: 154 VRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIAS 213
Query: 249 ASEDGTILIWNATTFRLQNTLSSGLERVWSIGY 281
A +DG I++WN + TLS+ + V+S+ +
Sbjct: 214 AGKDGEIMLWNLAAKKAMYTLSA-QDEVFSLAF 245
Score = 60.8 bits (146), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 40/123 (32%), Positives = 61/123 (49%), Gaps = 3/123 (2%)
Query: 139 TFEGHSHYVMQSAFNPKDLNTFASASLDGTIQIWNMDSSAAKFTLDAHE-KGINCI--DY 195
T EGH+ +V A + N SAS D T+ W + KF + KG + I D
Sbjct: 12 TLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDC 71
Query: 196 FITSDKVYLITGSDDFTVKVWDYETKTCVQILEGHTNNVTAVCFHPELRIIITASEDGTI 255
+T+D Y ++ S D T+++WD T Q GH ++V +V + +II+ S D TI
Sbjct: 72 TLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTI 131
Query: 256 LIW 258
+W
Sbjct: 132 KVW 134
Score = 32.0 bits (71), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 25/131 (19%), Positives = 53/131 (40%), Gaps = 10/131 (7%)
Query: 6 ELQIEKEFIQKSDRVKSVDFHPTQPWVLASLYSGTVCIWNYHSQTTEKSVKVTDSPVRTA 65
+ QIE +FI + + ++ P + ++ G + +WN ++ ++ D V +
Sbjct: 185 QFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQDE-VFSL 243
Query: 66 KFVAREHWIVCGSDDKFIRVFDYNTMASVKEF--------EAHEDYIRSLAVHPTFPFVL 117
F +W+ + I+VF + V + +A E + SLA +
Sbjct: 244 AFSPNRYWLAAATATG-IKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLF 302
Query: 118 TASDDKLIKLW 128
D +I++W
Sbjct: 303 AGYTDNVIRVW 313
>pdb|3IZB|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into
A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae
Translating 80s Ribosome
pdb|3O2Z|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The First 80s In The Asymmetric Unit.
pdb|3O30|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The Second 80s In The Asymmetric Unit.
pdb|3U5C|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome A
pdb|3U5G|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome B
Length = 319
Score = 72.8 bits (177), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 56/213 (26%), Positives = 93/213 (43%), Gaps = 16/213 (7%)
Query: 73 WIVCGSDDKFIRVFDYNTMASVKEFEAHEDYIRSLAVHPTFPFVLTASDDKLIKLWDWEK 132
W + G D KF V+ F+ H ++ + + L+AS DK ++LWD
Sbjct: 45 WKLTGDDQKF--------GVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVAT 96
Query: 133 NWECTQTFEGHSHYVMQSAFNPKDLNTFASASLDGTIQIWNMDSSAAKFTLDAHEKGINC 192
E Q F GH VM + K + S S D TI++W + TL H ++
Sbjct: 97 G-ETYQRFVGHKSDVMSVDIDKK-ASMIISGSRDKTIKVWTIKGQCLA-TLLGHNDWVSQ 153
Query: 193 IDYFITS----DKVYLITGSDDFTVKVWDYETKTCVQILEGHTNNVTAVCFHPELRIIIT 248
+ D V +I+ +D VK W+ GH +N+ + P+ +I +
Sbjct: 154 VRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIAS 213
Query: 249 ASEDGTILIWNATTFRLQNTLSSGLERVWSIGY 281
A +DG I++WN + TLS+ + V+S+ +
Sbjct: 214 AGKDGEIMLWNLAAKKAMYTLSA-QDEVFSLAF 245
Score = 60.8 bits (146), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 40/123 (32%), Positives = 61/123 (49%), Gaps = 3/123 (2%)
Query: 139 TFEGHSHYVMQSAFNPKDLNTFASASLDGTIQIWNMDSSAAKFTLDAHE-KGINCI--DY 195
T EGH+ +V A + N SAS D T+ W + KF + KG + I D
Sbjct: 12 TLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDC 71
Query: 196 FITSDKVYLITGSDDFTVKVWDYETKTCVQILEGHTNNVTAVCFHPELRIIITASEDGTI 255
+T+D Y ++ S D T+++WD T Q GH ++V +V + +II+ S D TI
Sbjct: 72 TLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTI 131
Query: 256 LIW 258
+W
Sbjct: 132 KVW 134
Score = 32.0 bits (71), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 25/131 (19%), Positives = 53/131 (40%), Gaps = 10/131 (7%)
Query: 6 ELQIEKEFIQKSDRVKSVDFHPTQPWVLASLYSGTVCIWNYHSQTTEKSVKVTDSPVRTA 65
+ QIE +FI + + ++ P + ++ G + +WN ++ ++ D V +
Sbjct: 185 QFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQDE-VFSL 243
Query: 66 KFVAREHWIVCGSDDKFIRVFDYNTMASVKEF--------EAHEDYIRSLAVHPTFPFVL 117
F +W+ + I+VF + V + +A E + SLA +
Sbjct: 244 AFSPNRYWLAAATATG-IKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLF 302
Query: 118 TASDDKLIKLW 128
D +I++W
Sbjct: 303 AGYTDNVIRVW 313
>pdb|3RFH|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|C Chain C, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|D Chain D, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
Length = 319
Score = 72.8 bits (177), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 56/213 (26%), Positives = 93/213 (43%), Gaps = 16/213 (7%)
Query: 73 WIVCGSDDKFIRVFDYNTMASVKEFEAHEDYIRSLAVHPTFPFVLTASDDKLIKLWDWEK 132
W + G D KF V+ F+ H ++ + + L+AS DK ++LWD
Sbjct: 45 WKLTGDDQKF--------GVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVAT 96
Query: 133 NWECTQTFEGHSHYVMQSAFNPKDLNTFASASLDGTIQIWNMDSSAAKFTLDAHEKGINC 192
E Q F GH VM + K + S S D TI++W + TL H ++
Sbjct: 97 G-ETYQRFVGHKSDVMSVDIDKK-ASMIISGSRDKTIKVWTIKGQCLA-TLLGHNDWVSQ 153
Query: 193 IDYFITS----DKVYLITGSDDFTVKVWDYETKTCVQILEGHTNNVTAVCFHPELRIIIT 248
+ D V +I+ +D VK W+ GH +N+ + P+ +I +
Sbjct: 154 VRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIAS 213
Query: 249 ASEDGTILIWNATTFRLQNTLSSGLERVWSIGY 281
A +DG I++WN + TLS+ + V+S+ +
Sbjct: 214 AGKDGEIMLWNLAAKKAMYTLSA-QDEVFSLAF 245
Score = 60.8 bits (146), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 40/123 (32%), Positives = 61/123 (49%), Gaps = 3/123 (2%)
Query: 139 TFEGHSHYVMQSAFNPKDLNTFASASLDGTIQIWNMDSSAAKFTLDAHE-KGINCI--DY 195
T EGH+ +V A + N SAS D T+ W + KF + KG + I D
Sbjct: 12 TLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDC 71
Query: 196 FITSDKVYLITGSDDFTVKVWDYETKTCVQILEGHTNNVTAVCFHPELRIIITASEDGTI 255
+T+D Y ++ S D T+++WD T Q GH ++V +V + +II+ S D TI
Sbjct: 72 TLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTI 131
Query: 256 LIW 258
+W
Sbjct: 132 KVW 134
Score = 32.0 bits (71), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 25/131 (19%), Positives = 52/131 (39%), Gaps = 10/131 (7%)
Query: 6 ELQIEKEFIQKSDRVKSVDFHPTQPWVLASLYSGTVCIWNYHSQTTEKSVKVTDSPVRTA 65
+ QIE +FI + + ++ P + ++ G + +WN ++ ++ D V +
Sbjct: 185 QFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQDE-VFSL 243
Query: 66 KFVAREHWIVCGSDDKFIRVFDYNTMASVKEFE--------AHEDYIRSLAVHPTFPFVL 117
F +W+ + I+VF + V + A E + SLA +
Sbjct: 244 AFSPNRYWLAAATATG-IKVFSLDPQYLVDDLRPEFAGYSAAAEPHAVSLAWSADGQTLF 302
Query: 118 TASDDKLIKLW 128
D +I++W
Sbjct: 303 AGYTDNVIRVW 313
>pdb|2BCJ|B Chain B, Crystal Structure Of G Protein-coupled Receptor Kinase 2
In Complex With Galpha-q And Gbetagamma Subunits
Length = 340
Score = 72.4 bits (176), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 64/260 (24%), Positives = 109/260 (41%), Gaps = 13/260 (5%)
Query: 39 GTVCIWNYHSQTTEKSVKVTDSPVRTAKFVAREHWIVCGSDDKFIRVFDYNTMAS----V 94
G + IW+ ++ ++ + S V T + +++ CG D +++ T
Sbjct: 77 GKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVS 136
Query: 95 KEFEAHEDYIRSLAVHPTFPFVLTASDDKLIKLWDWEKNWECTQTFEGHSHYVMQSAFNP 154
+E H Y+ S ++T+S D LWD E + T TF GH+ VM + P
Sbjct: 137 RELAGHTGYL-SCCRFLDDNQIVTSSGDTTCALWDIETGQQ-TTTFTGHTGDVMSLSLAP 194
Query: 155 KDLNTFASASLDGTIQIWNMDSSAAKFTLDAHEKGINCIDYFITSDKVYLITGSDDFTVK 214
D F S + D + ++W++ + T HE IN I +F + TGSDD T +
Sbjct: 195 -DTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNA--FATGSDDATCR 251
Query: 215 VWDYETKTCVQILEGHTN---NVTAVCFHPELRIIITASEDGTILIWNATTFRLQNTLSS 271
++D + H N +T+V F R+++ +D +W+A L+
Sbjct: 252 LFDLRADQELMTYS-HDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAG 310
Query: 272 GLERVWSIGYKKGSNQVAFG 291
RV +G VA G
Sbjct: 311 HDNRVSCLGVTDDGMAVATG 330
Score = 71.2 bits (173), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 63/251 (25%), Positives = 106/251 (42%), Gaps = 13/251 (5%)
Query: 16 KSDRVKSVDFHPTQPWVLASLYSGTVCIWNYHSQTTEKSVKVTDSPVRTAKFVA-----R 70
+S V + + P+ +V I+N +T E +V+V+ +++
Sbjct: 96 RSSWVMTCAYAPSGNYVACGGLDNICSIYNL--KTREGNVRVSRELAGHTGYLSCCRFLD 153
Query: 71 EHWIVCGSDDKFIRVFDYNTMASVKEFEAHEDYIRSLAVHPTFPFVLTASDDKLIKLWDW 130
++ IV S D ++D T F H + SL++ P ++ + D KLWD
Sbjct: 154 DNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDV 213
Query: 131 EKNWECTQTFEGHSHYVMQSAFNPKDLNTFASASLDGTIQIWNM--DSSAAKFTLDAHEK 188
+ C QTF GH + F P N FA+ S D T +++++ D ++ D
Sbjct: 214 REGM-CRQTFTGHESDINAICFFPNG-NAFATGSDDATCRLFDLRADQELMTYSHDNIIC 271
Query: 189 GINCIDYFITSDKVYLITGSDDFTVKVWDYETKTCVQILEGHTNNVTAVCFHPELRIIIT 248
GI + + + L+ G DDF VWD +L GH N V+ + + + T
Sbjct: 272 GITSVSF--SKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVAT 329
Query: 249 ASEDGTILIWN 259
S D + IWN
Sbjct: 330 GSWDSFLKIWN 340
Score = 66.2 bits (160), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 44/197 (22%), Positives = 84/197 (42%), Gaps = 13/197 (6%)
Query: 72 HW------IVCGSDDKFIRVFDYNTMASVKEFEAHEDYIRSLAVHPTFPFVLTASDDKLI 125
HW +V S D + ++D T V ++ + A P+ +V D +
Sbjct: 62 HWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNIC 121
Query: 126 KLWDW---EKNWECTQTFEGHSHYVMQSAFNPKDLNTFASASLDGTIQIWNMDSSAAKFT 182
+++ E N ++ GH+ Y+ F D N ++S D T +W++++ T
Sbjct: 122 SIYNLKTREGNVRVSRELAGHTGYLSCCRF--LDDNQIVTSSGDTTCALWDIETGQQTTT 179
Query: 183 LDAHEKGINCIDYFITSDKVYLITGSDDFTVKVWDYETKTCVQILEGHTNNVTAVCFHPE 242
H + + + D ++G+ D + K+WD C Q GH +++ A+CF P
Sbjct: 180 FTGHTGDV--MSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPN 237
Query: 243 LRIIITASEDGTILIWN 259
T S+D T +++
Sbjct: 238 GNAFATGSDDATCRLFD 254
Score = 55.1 bits (131), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 46/210 (21%), Positives = 84/210 (40%), Gaps = 9/210 (4%)
Query: 91 MASVKEFEAHEDYIRSLAVHPTFPFVLTASDDKLIKLWDWEKNWECTQTFEGHSHYVMQS 150
M + + H I ++ +++AS D + +WD + S +VM
Sbjct: 45 MRTRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNK-VHAIPLRSSWVMTC 103
Query: 151 AFNPKDLNTFASASLDGTIQIWNMDSSAAKFT----LDAHEKGINCIDYFITSDKVYLIT 206
A+ P N A LD I+N+ + L H ++C + D ++T
Sbjct: 104 AYAPSG-NYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFL---DDNQIVT 159
Query: 207 GSDDFTVKVWDYETKTCVQILEGHTNNVTAVCFHPELRIIITASEDGTILIWNATTFRLQ 266
S D T +WD ET GHT +V ++ P+ R+ ++ + D + +W+ +
Sbjct: 160 SSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCR 219
Query: 267 NTLSSGLERVWSIGYKKGSNQVAFGCDNGT 296
T + + +I + N A G D+ T
Sbjct: 220 QTFTGHESDINAICFFPNGNAFATGSDDAT 249
>pdb|1GG2|B Chain B, G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Beta_1
Gamma_2 With Gdp Bound
pdb|1GP2|B Chain B, G Protein Heterotrimer Gi_alpha_1 Beta_1 Gamma_2 With Gdp
Bound
pdb|1TBG|A Chain A, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|B Chain B, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|C Chain C, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|D Chain D, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1OMW|B Chain B, Crystal Structure Of The Complex Between G Protein-Coupled
Receptor Kinase 2 And Heterotrimeric G Protein Beta 1
And Gamma 2 Subunits
pdb|1XHM|A Chain A, The Crystal Structure Of A Biologically Active Peptide
(Sigk) Bound To A G Protein Beta:gamma Heterodimer
pdb|3CIK|B Chain B, Human Grk2 In Complex With Gbetagamma Subunits
pdb|3KRW|B Chain B, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Soak)
pdb|3KRX|B Chain B, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Co-Crystal)
pdb|3AH8|B Chain B, Structure Of Heterotrimeric G Protein Galpha-Q Beta Gamma
In Complex With An Inhibitor Ym-254890
pdb|3PSC|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits
pdb|3PVU|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd101)
pdb|3PVW|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd103a)
pdb|3UZS|B Chain B, Structure Of The C13.28 Rna Aptamer Bound To The G
Protein-Coupled Receptor Kinase 2-Heterotrimeric G
Protein Beta 1 And Gamma 2 Subunit Complex
pdb|3V5W|B Chain B, Human G Protein-Coupled Receptor Kinase 2 In Complex With
Soluble Gbetagamma Subunits And Paroxetine
Length = 340
Score = 72.4 bits (176), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 64/260 (24%), Positives = 109/260 (41%), Gaps = 13/260 (5%)
Query: 39 GTVCIWNYHSQTTEKSVKVTDSPVRTAKFVAREHWIVCGSDDKFIRVFDYNTMAS----V 94
G + IW+ ++ ++ + S V T + +++ CG D +++ T
Sbjct: 77 GKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVS 136
Query: 95 KEFEAHEDYIRSLAVHPTFPFVLTASDDKLIKLWDWEKNWECTQTFEGHSHYVMQSAFNP 154
+E H Y+ S ++T+S D LWD E + T TF GH+ VM + P
Sbjct: 137 RELAGHTGYL-SCCRFLDDNQIVTSSGDTTCALWDIETGQQ-TTTFTGHTGDVMSLSLAP 194
Query: 155 KDLNTFASASLDGTIQIWNMDSSAAKFTLDAHEKGINCIDYFITSDKVYLITGSDDFTVK 214
D F S + D + ++W++ + T HE IN I +F + TGSDD T +
Sbjct: 195 -DTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNA--FATGSDDATCR 251
Query: 215 VWDYETKTCVQILEGHTN---NVTAVCFHPELRIIITASEDGTILIWNATTFRLQNTLSS 271
++D + H N +T+V F R+++ +D +W+A L+
Sbjct: 252 LFDLRADQELMTYS-HDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAG 310
Query: 272 GLERVWSIGYKKGSNQVAFG 291
RV +G VA G
Sbjct: 311 HDNRVSCLGVTDDGMAVATG 330
Score = 71.2 bits (173), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 63/251 (25%), Positives = 106/251 (42%), Gaps = 13/251 (5%)
Query: 16 KSDRVKSVDFHPTQPWVLASLYSGTVCIWNYHSQTTEKSVKVTDSPVRTAKFVA-----R 70
+S V + + P+ +V I+N +T E +V+V+ +++
Sbjct: 96 RSSWVMTCAYAPSGNYVACGGLDNICSIYNL--KTREGNVRVSRELAGHTGYLSCCRFLD 153
Query: 71 EHWIVCGSDDKFIRVFDYNTMASVKEFEAHEDYIRSLAVHPTFPFVLTASDDKLIKLWDW 130
++ IV S D ++D T F H + SL++ P ++ + D KLWD
Sbjct: 154 DNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDV 213
Query: 131 EKNWECTQTFEGHSHYVMQSAFNPKDLNTFASASLDGTIQIWNM--DSSAAKFTLDAHEK 188
+ C QTF GH + F P N FA+ S D T +++++ D ++ D
Sbjct: 214 REGM-CRQTFTGHESDINAICFFPNG-NAFATGSDDATCRLFDLRADQELMTYSHDNIIC 271
Query: 189 GINCIDYFITSDKVYLITGSDDFTVKVWDYETKTCVQILEGHTNNVTAVCFHPELRIIIT 248
GI + + + L+ G DDF VWD +L GH N V+ + + + T
Sbjct: 272 GITSVSF--SKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVAT 329
Query: 249 ASEDGTILIWN 259
S D + IWN
Sbjct: 330 GSWDSFLKIWN 340
Score = 66.2 bits (160), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 44/197 (22%), Positives = 84/197 (42%), Gaps = 13/197 (6%)
Query: 72 HW------IVCGSDDKFIRVFDYNTMASVKEFEAHEDYIRSLAVHPTFPFVLTASDDKLI 125
HW +V S D + ++D T V ++ + A P+ +V D +
Sbjct: 62 HWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNIC 121
Query: 126 KLWDW---EKNWECTQTFEGHSHYVMQSAFNPKDLNTFASASLDGTIQIWNMDSSAAKFT 182
+++ E N ++ GH+ Y+ F D N ++S D T +W++++ T
Sbjct: 122 SIYNLKTREGNVRVSRELAGHTGYLSCCRF--LDDNQIVTSSGDTTCALWDIETGQQTTT 179
Query: 183 LDAHEKGINCIDYFITSDKVYLITGSDDFTVKVWDYETKTCVQILEGHTNNVTAVCFHPE 242
H + + + D ++G+ D + K+WD C Q GH +++ A+CF P
Sbjct: 180 FTGHTGDV--MSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPN 237
Query: 243 LRIIITASEDGTILIWN 259
T S+D T +++
Sbjct: 238 GNAFATGSDDATCRLFD 254
Score = 55.1 bits (131), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 46/210 (21%), Positives = 84/210 (40%), Gaps = 9/210 (4%)
Query: 91 MASVKEFEAHEDYIRSLAVHPTFPFVLTASDDKLIKLWDWEKNWECTQTFEGHSHYVMQS 150
M + + H I ++ +++AS D + +WD + S +VM
Sbjct: 45 MRTRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNK-VHAIPLRSSWVMTC 103
Query: 151 AFNPKDLNTFASASLDGTIQIWNMDSSAAKFT----LDAHEKGINCIDYFITSDKVYLIT 206
A+ P N A LD I+N+ + L H ++C + D ++T
Sbjct: 104 AYAPSG-NYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFL---DDNQIVT 159
Query: 207 GSDDFTVKVWDYETKTCVQILEGHTNNVTAVCFHPELRIIITASEDGTILIWNATTFRLQ 266
S D T +WD ET GHT +V ++ P+ R+ ++ + D + +W+ +
Sbjct: 160 SSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCR 219
Query: 267 NTLSSGLERVWSIGYKKGSNQVAFGCDNGT 296
T + + +I + N A G D+ T
Sbjct: 220 QTFTGHESDINAICFFPNGNAFATGSDDAT 249
>pdb|3SN6|B Chain B, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs
Protein Complex
Length = 351
Score = 72.4 bits (176), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 64/260 (24%), Positives = 109/260 (41%), Gaps = 13/260 (5%)
Query: 39 GTVCIWNYHSQTTEKSVKVTDSPVRTAKFVAREHWIVCGSDDKFIRVFDYNTMAS----V 94
G + IW+ ++ ++ + S V T + +++ CG D +++ T
Sbjct: 88 GKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVS 147
Query: 95 KEFEAHEDYIRSLAVHPTFPFVLTASDDKLIKLWDWEKNWECTQTFEGHSHYVMQSAFNP 154
+E H Y+ S ++T+S D LWD E + T TF GH+ VM + P
Sbjct: 148 RELAGHTGYL-SCCRFLDDNQIVTSSGDTTCALWDIETGQQ-TTTFTGHTGDVMSLSLAP 205
Query: 155 KDLNTFASASLDGTIQIWNMDSSAAKFTLDAHEKGINCIDYFITSDKVYLITGSDDFTVK 214
D F S + D + ++W++ + T HE IN I +F + TGSDD T +
Sbjct: 206 -DTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNA--FATGSDDATCR 262
Query: 215 VWDYETKTCVQILEGHTN---NVTAVCFHPELRIIITASEDGTILIWNATTFRLQNTLSS 271
++D + H N +T+V F R+++ +D +W+A L+
Sbjct: 263 LFDLRADQELMTYS-HDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAG 321
Query: 272 GLERVWSIGYKKGSNQVAFG 291
RV +G VA G
Sbjct: 322 HDNRVSCLGVTDDGMAVATG 341
Score = 71.2 bits (173), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 63/251 (25%), Positives = 106/251 (42%), Gaps = 13/251 (5%)
Query: 16 KSDRVKSVDFHPTQPWVLASLYSGTVCIWNYHSQTTEKSVKVTDSPVRTAKFVA-----R 70
+S V + + P+ +V I+N +T E +V+V+ +++
Sbjct: 107 RSSWVMTCAYAPSGNYVACGGLDNICSIYNL--KTREGNVRVSRELAGHTGYLSCCRFLD 164
Query: 71 EHWIVCGSDDKFIRVFDYNTMASVKEFEAHEDYIRSLAVHPTFPFVLTASDDKLIKLWDW 130
++ IV S D ++D T F H + SL++ P ++ + D KLWD
Sbjct: 165 DNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDV 224
Query: 131 EKNWECTQTFEGHSHYVMQSAFNPKDLNTFASASLDGTIQIWNM--DSSAAKFTLDAHEK 188
+ C QTF GH + F P N FA+ S D T +++++ D ++ D
Sbjct: 225 REGM-CRQTFTGHESDINAICFFPNG-NAFATGSDDATCRLFDLRADQELMTYSHDNIIC 282
Query: 189 GINCIDYFITSDKVYLITGSDDFTVKVWDYETKTCVQILEGHTNNVTAVCFHPELRIIIT 248
GI + + + L+ G DDF VWD +L GH N V+ + + + T
Sbjct: 283 GITSVSF--SKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVAT 340
Query: 249 ASEDGTILIWN 259
S D + IWN
Sbjct: 341 GSWDSFLKIWN 351
Score = 66.2 bits (160), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 44/197 (22%), Positives = 84/197 (42%), Gaps = 13/197 (6%)
Query: 72 HW------IVCGSDDKFIRVFDYNTMASVKEFEAHEDYIRSLAVHPTFPFVLTASDDKLI 125
HW +V S D + ++D T V ++ + A P+ +V D +
Sbjct: 73 HWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNIC 132
Query: 126 KLWDW---EKNWECTQTFEGHSHYVMQSAFNPKDLNTFASASLDGTIQIWNMDSSAAKFT 182
+++ E N ++ GH+ Y+ F D N ++S D T +W++++ T
Sbjct: 133 SIYNLKTREGNVRVSRELAGHTGYLSCCRF--LDDNQIVTSSGDTTCALWDIETGQQTTT 190
Query: 183 LDAHEKGINCIDYFITSDKVYLITGSDDFTVKVWDYETKTCVQILEGHTNNVTAVCFHPE 242
H + + + D ++G+ D + K+WD C Q GH +++ A+CF P
Sbjct: 191 FTGHTGDV--MSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPN 248
Query: 243 LRIIITASEDGTILIWN 259
T S+D T +++
Sbjct: 249 GNAFATGSDDATCRLFD 265
Score = 55.1 bits (131), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 46/210 (21%), Positives = 84/210 (40%), Gaps = 9/210 (4%)
Query: 91 MASVKEFEAHEDYIRSLAVHPTFPFVLTASDDKLIKLWDWEKNWECTQTFEGHSHYVMQS 150
M + + H I ++ +++AS D + +WD + S +VM
Sbjct: 56 MRTRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNK-VHAIPLRSSWVMTC 114
Query: 151 AFNPKDLNTFASASLDGTIQIWNMDSSAAKFT----LDAHEKGINCIDYFITSDKVYLIT 206
A+ P N A LD I+N+ + L H ++C + D ++T
Sbjct: 115 AYAPSG-NYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFL---DDNQIVT 170
Query: 207 GSDDFTVKVWDYETKTCVQILEGHTNNVTAVCFHPELRIIITASEDGTILIWNATTFRLQ 266
S D T +WD ET GHT +V ++ P+ R+ ++ + D + +W+ +
Sbjct: 171 SSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCR 230
Query: 267 NTLSSGLERVWSIGYKKGSNQVAFGCDNGT 296
T + + +I + N A G D+ T
Sbjct: 231 QTFTGHESDINAICFFPNGNAFATGSDDAT 260
>pdb|2XZM|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 1
pdb|2XZN|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 2
Length = 343
Score = 72.0 bits (175), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 55/200 (27%), Positives = 96/200 (48%), Gaps = 18/200 (9%)
Query: 75 VCGSDDKFIRVFDYNTMASVKEFEAHEDYIRSLAVHPTFPFVLTASDDKLIKLWDWEKNW 134
+ S DK +R++D T + K F H+ + S+A P +L+A ++ IKLW+
Sbjct: 92 ISSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNILG-- 149
Query: 135 EC---TQTFEGHSHYVMQSAFNP--KDLNT-------FASASLDGTIQIWNMDSSAAKFT 182
EC + E HS +V ++P K N FAS DG +++WN + ++T
Sbjct: 150 ECKFSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNTNFQ-IRYT 208
Query: 183 LDAHEKGINCIDYFITSDKVYLITGSDDFTVKVWDYETKTCVQILEGHTNNVTAVCFHPE 242
AHE +N + I+ + Y+ TG D + +WD T Q + + + F+P+
Sbjct: 209 FKAHESNVNHLS--ISPNGKYIATGGKDKKLLIWDILNLTYPQREFDAGSTINQIAFNPK 266
Query: 243 LRIIITASEDGTILIWNATT 262
L+ + ++ G + I+N T
Sbjct: 267 LQWVAVGTDQG-VKIFNLMT 285
Score = 55.5 bits (132), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 36/130 (27%), Positives = 61/130 (46%), Gaps = 10/130 (7%)
Query: 140 FEGHSHYV--MQSAFNPK---DLNTFASASLDGTIQIWNMDSSAAKFTLDAHEKGINCID 194
EGHS +V + + F+ K D S S D T+ IW + K + +
Sbjct: 17 LEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHN 76
Query: 195 YFIT-----SDKVYLITGSDDFTVKVWDYETKTCVQILEGHTNNVTAVCFHPELRIIITA 249
+F++ + + I+ S D T+++WD T T + GH + V +V F P+ R I++A
Sbjct: 77 HFVSDLALSQENCFAISSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQILSA 136
Query: 250 SEDGTILIWN 259
+ I +WN
Sbjct: 137 GAEREIKLWN 146
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 55/239 (23%), Positives = 94/239 (39%), Gaps = 39/239 (16%)
Query: 11 KEFIQKSDRVKSVDFHPTQPWVLASLYSGTVCIWNYHSQTTEKSVK----------VTDS 60
K F+ V SV F P +L++ + +WN + S + V S
Sbjct: 112 KRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNILGECKFSSAEKENHSDWVSCVRYS 171
Query: 61 PVRT--------AKFVAREHWIVCGSDDKFIRVFDYNTMASVKEFEAHEDYIRSLAVHPT 112
P+ A + A W D ++V++ N F+AHE + L++ P
Sbjct: 172 PIMKSANKVQPFAPYFASVGW------DGRLKVWNTNFQIRYT-FKAHESNVNHLSISPN 224
Query: 113 FPFVLTASDDKLIKLWDWEKNWECTQTFEGHSHYVMQSAFNPKDLNTFASASLDGTIQIW 172
++ T DK + +WD + F+ S + Q AFNPK + + D ++I+
Sbjct: 225 GKYIATGGKDKKLLIWDILNLTYPQREFDAGS-TINQIAFNPKL--QWVAVGTDQGVKIF 281
Query: 173 NM--DSSAAKFTLDAH-------EKGIN--CIDYFITSDKVYLITGSDDFTVKVWDYET 220
N+ S A T++A +KG N C + L G D ++ + +ET
Sbjct: 282 NLMTQSKAPVCTIEAEPITKAEGQKGKNPQCTSLAWNALGKKLFAGFTDGVIRTFSFET 340
Score = 32.0 bits (71), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 25/96 (26%), Positives = 42/96 (43%), Gaps = 7/96 (7%)
Query: 200 DKVYLITGSDDFTVKVWD-YETKTCV------QILEGHTNNVTAVCFHPELRIIITASED 252
D LI+GS D TV +W YE + + L GH + V+ + E I++S D
Sbjct: 38 DSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENCFAISSSWD 97
Query: 253 GTILIWNATTFRLQNTLSSGLERVWSIGYKKGSNQV 288
T+ +W+ T V+S+ + + Q+
Sbjct: 98 KTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQI 133
>pdb|4AOW|A Chain A, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|B Chain B, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|C Chain C, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
Length = 340
Score = 71.6 bits (174), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 62/253 (24%), Positives = 113/253 (44%), Gaps = 23/253 (9%)
Query: 32 VLASLYSGTVCIWNYHSQTTEKSVKVTDSPVRTAKFVAREHWIVCGSDDKFIRVFDYNTM 91
L+ + GT+ +W+ + TT + V + F + IV GS DK I++ +NT+
Sbjct: 101 ALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKL--WNTL 158
Query: 92 ASVK---EFEAHEDYIRSLAVHP--TFPFVLTASDDKLIKLWDWEKNWECTQTFEGHSHY 146
K + E+H +++ + P + P +++ DKL+K+W+ N + GH+ Y
Sbjct: 159 GVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWN-LANCKLKTNHIGHTGY 217
Query: 147 VMQSAFNPKDLNTFASASLDGTIQIWNMDSSAAKFTLDAHEKGINCIDYFITSDKVYLIT 206
+ +P D + AS DG +W+++ +TLD G + I+ S Y +
Sbjct: 218 LNTVTVSP-DGSLCASGGKDGQAMLWDLNEGKHLYTLD----GGDIINALCFSPNRYWLC 272
Query: 207 GSDDFTVKVWDYETKTCVQILEGHTNNVTAVCFHPELRIIITASEDGTILIWNATTFRLQ 266
+ ++K+WD E K V L+ + ++ P+ T L W+A L
Sbjct: 273 AATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQC----------TSLAWSADGQTLF 322
Query: 267 NTLSSGLERVWSI 279
+ L RVW +
Sbjct: 323 AGYTDNLVRVWQV 335
Score = 71.2 bits (173), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 42/126 (33%), Positives = 66/126 (52%), Gaps = 7/126 (5%)
Query: 139 TFEGHSHYVMQSAFNPKDLNTFASASLDGTIQIWNMDSSAAKF-----TLDAHEKGINCI 193
T +GH+ +V Q A P+ + SAS D TI +W + + L H ++
Sbjct: 33 TLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVS-- 90
Query: 194 DYFITSDKVYLITGSDDFTVKVWDYETKTCVQILEGHTNNVTAVCFHPELRIIITASEDG 253
D I+SD + ++GS D T+++WD T T + GHT +V +V F + R I++ S D
Sbjct: 91 DVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDK 150
Query: 254 TILIWN 259
TI +WN
Sbjct: 151 TIKLWN 156
>pdb|2ZKQ|AA Chain a, Structure Of A Mammalian Ribosomal 40s Subunit Within An
80s Complex Obtained By Docking Homology Models Of The
Rna And Proteins Into An 8.7 A Cryo-Em Map
Length = 317
Score = 71.6 bits (174), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 62/253 (24%), Positives = 113/253 (44%), Gaps = 23/253 (9%)
Query: 32 VLASLYSGTVCIWNYHSQTTEKSVKVTDSPVRTAKFVAREHWIVCGSDDKFIRVFDYNTM 91
L+ + GT+ +W+ + TT + V + F + IV GS DK I++ +NT+
Sbjct: 78 ALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKL--WNTL 135
Query: 92 ASVK---EFEAHEDYIRSLAVHP--TFPFVLTASDDKLIKLWDWEKNWECTQTFEGHSHY 146
K + E+H +++ + P + P +++ DKL+K+W+ N + GH+ Y
Sbjct: 136 GVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWN-LANCKLKTNHIGHTGY 194
Query: 147 VMQSAFNPKDLNTFASASLDGTIQIWNMDSSAAKFTLDAHEKGINCIDYFITSDKVYLIT 206
+ +P D + AS DG +W+++ +TLD G + I+ S Y +
Sbjct: 195 LNTVTVSP-DGSLCASGGKDGQAMLWDLNEGKHLYTLD----GGDIINALCFSPNRYWLC 249
Query: 207 GSDDFTVKVWDYETKTCVQILEGHTNNVTAVCFHPELRIIITASEDGTILIWNATTFRLQ 266
+ ++K+WD E K V L+ + ++ P+ T L W+A L
Sbjct: 250 AATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQC----------TSLAWSADGQTLF 299
Query: 267 NTLSSGLERVWSI 279
+ L RVW +
Sbjct: 300 AGYTDNLVRVWQV 312
Score = 71.6 bits (174), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 42/126 (33%), Positives = 66/126 (52%), Gaps = 7/126 (5%)
Query: 139 TFEGHSHYVMQSAFNPKDLNTFASASLDGTIQIWNMDSSAAKF-----TLDAHEKGINCI 193
T +GH+ +V Q A P+ + SAS D TI +W + + L H ++
Sbjct: 10 TLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVS-- 67
Query: 194 DYFITSDKVYLITGSDDFTVKVWDYETKTCVQILEGHTNNVTAVCFHPELRIIITASEDG 253
D I+SD + ++GS D T+++WD T T + GHT +V +V F + R I++ S D
Sbjct: 68 DVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDK 127
Query: 254 TILIWN 259
TI +WN
Sbjct: 128 TIKLWN 133
>pdb|3FRX|A Chain A, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|B Chain B, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|C Chain C, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|D Chain D, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1
Length = 319
Score = 68.6 bits (166), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 55/213 (25%), Positives = 91/213 (42%), Gaps = 16/213 (7%)
Query: 73 WIVCGSDDKFIRVFDYNTMASVKEFEAHEDYIRSLAVHPTFPFVLTASDDKLIKLWDWEK 132
W + G D KF V+ F+ H ++ + + L+AS DK ++LWD
Sbjct: 45 WKLTGDDQKF--------GVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVAT 96
Query: 133 NWECTQTFEGHSHYVMQSAFNPKDLNTFASASLDGTIQIWNMDSSAAKFTLDAHEKGINC 192
E Q F GH V + K + S S D TI++W + TL H ++
Sbjct: 97 G-ETYQRFVGHKSDVXSVDIDKK-ASXIISGSRDKTIKVWTIKGQCLA-TLLGHNDWVSQ 153
Query: 193 IDYFITS----DKVYLITGSDDFTVKVWDYETKTCVQILEGHTNNVTAVCFHPELRIIIT 248
+ D V +I+ +D VK W+ GH +N+ + P+ +I +
Sbjct: 154 VRVVPNEKADDDSVTIISAGNDKXVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIAS 213
Query: 249 ASEDGTILIWNATTFRLQNTLSSGLERVWSIGY 281
A +DG I +WN + TLS+ + V+S+ +
Sbjct: 214 AGKDGEIXLWNLAAKKAXYTLSA-QDEVFSLAF 245
Score = 60.1 bits (144), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 40/123 (32%), Positives = 60/123 (48%), Gaps = 3/123 (2%)
Query: 139 TFEGHSHYVMQSAFNPKDLNTFASASLDGTIQIWNMDSSAAKFTLDAHE-KGINCI--DY 195
T EGH+ +V A + N SAS D T+ W + KF + KG + I D
Sbjct: 12 TLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDC 71
Query: 196 FITSDKVYLITGSDDFTVKVWDYETKTCVQILEGHTNNVTAVCFHPELRIIITASEDGTI 255
+T+D Y ++ S D T+++WD T Q GH ++V +V + II+ S D TI
Sbjct: 72 TLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVXSVDIDKKASXIISGSRDKTI 131
Query: 256 LIW 258
+W
Sbjct: 132 KVW 134
Score = 32.0 bits (71), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 25/131 (19%), Positives = 53/131 (40%), Gaps = 10/131 (7%)
Query: 6 ELQIEKEFIQKSDRVKSVDFHPTQPWVLASLYSGTVCIWNYHSQTTEKSVKVTDSPVRTA 65
+ QIE +FI + + ++ P + ++ G + +WN ++ ++ D V +
Sbjct: 185 QFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIXLWNLAAKKAXYTLSAQDE-VFSL 243
Query: 66 KFVAREHWIVCGSDDKFIRVFDYNTMASVKEF--------EAHEDYIRSLAVHPTFPFVL 117
F +W+ + I+VF + V + +A E + SLA +
Sbjct: 244 AFSPNRYWLAAATATG-IKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLF 302
Query: 118 TASDDKLIKLW 128
D +I++W
Sbjct: 303 AGYTDNVIRVW 313
>pdb|4GGC|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site
Degron Recognition By ApcC
Length = 318
Score = 62.4 bits (150), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 60/258 (23%), Positives = 102/258 (39%), Gaps = 13/258 (5%)
Query: 7 LQIEKEFIQKSDRVKSVDFHPTQPWVLASLYSGTVCIWNYHSQTTEKSVKVTDSPVRTAK 66
LQ+E Q + + SV + ++ S V +W+ Q ++ +T R
Sbjct: 61 LQME----QPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQ--KRLRNMTSHSARVGS 114
Query: 67 FVAREHWIVCGSDDKFIRVFDYNTMAS-VKEFEAHEDYIRSLAVHPTFPFVLTASDDKLI 125
+ + GS I D V H + L P + + +D L+
Sbjct: 115 LSWNSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLV 174
Query: 126 KLWD---WEKNWECTQTFEGHSHYVMQSAFNPKDLNTFASA--SLDGTIQIWNMDSSAAK 180
+W E W QTF H V A+ P N A+ + D I+IWN+ S A
Sbjct: 175 NVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACL 234
Query: 181 FTLDAHEKGINCIDYFITSDKVYLITGSDDFTVKVWDYETKTCVQILEGHTNNVTAVCFH 240
+DAH + + I + ++ G + +W Y T V L+GHT+ V ++
Sbjct: 235 SAVDAHSQ-VCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMS 293
Query: 241 PELRIIITASEDGTILIW 258
P+ + +A+ D T+ +W
Sbjct: 294 PDGATVASAAADETLRLW 311
>pdb|4GGA|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site
Degron Recognition By ApcC
Length = 420
Score = 61.6 bits (148), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 61/260 (23%), Positives = 101/260 (38%), Gaps = 17/260 (6%)
Query: 7 LQIEKEFIQKSDRVKSVDFHPTQPWVLASLYSGTVCIWNYHSQTTEKSVKVTDSPVRTAK 66
LQ+E Q + + SV + ++ S V +W+ Q +++ T R
Sbjct: 141 LQME----QPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNM--TSHSARVGS 194
Query: 67 FVAREHWIVCGSDDKFIRVFDYNTMAS-VKEFEAHEDYIRSLAVHPTFPFVLTASDDKLI 125
+ + GS I D V H + L P + + +D L+
Sbjct: 195 LSWNSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLV 254
Query: 126 KLWD---WEKNWECTQTFEGHSHYVMQSAFNPKDLNTFASA--SLDGTIQIWNMDSSAAK 180
+W E W QTF H V A+ P N A+ + D I+IWN+ S A
Sbjct: 255 NVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACL 314
Query: 181 FTLDAHEKGINCIDYFITSDKVYLITGSD--DFTVKVWDYETKTCVQILEGHTNNVTAVC 238
+DAH + + LI+G + +W Y T V L+GHT+ V ++
Sbjct: 315 SAVDAHSQ---VCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLT 371
Query: 239 FHPELRIIITASEDGTILIW 258
P+ + +A+ D T+ +W
Sbjct: 372 MSPDGATVASAAADETLRLW 391
>pdb|2YBA|A Chain A, Crystal Structure Of Nurf55 In Complex With Histone H3
pdb|2YBA|B Chain B, Crystal Structure Of Nurf55 In Complex With Histone H3
pdb|2YB8|B Chain B, Crystal Structure Of Nurf55 In Complex With Su(Z)12
Length = 422
Score = 61.6 bits (148), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 55/199 (27%), Positives = 88/199 (44%), Gaps = 23/199 (11%)
Query: 83 IRVFDYNTMASVKE----------FEAHEDYIRSLAVHPTF-PFVLTASDDKLIKLWD-- 129
+ VFDY S E H+ L+ +P ++L+ASDD I LWD
Sbjct: 157 VLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDIN 216
Query: 130 ----WEKNWECTQTFEGHSHYVMQSAFNPKDLNTFASASLDGTIQIW---NMDSSAAKFT 182
+ + F GH+ V A++ + F S + D + IW N ++S T
Sbjct: 217 ATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHT 276
Query: 183 LDAHEKGINCIDYFITSDKVYLITGSDDFTVKVWDYET-KTCVQILEGHTNNVTAVCFHP 241
+DAH +NC+ + S+ + L TGS D TV +WD K + E H + + V + P
Sbjct: 277 VDAHTAEVNCLSFNPYSEFI-LATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSP 335
Query: 242 ELRIIITAS-EDGTILIWN 259
I+ +S D + +W+
Sbjct: 336 HNETILASSGTDRRLHVWD 354
Score = 48.5 bits (114), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 55/243 (22%), Positives = 100/243 (41%), Gaps = 47/243 (19%)
Query: 31 WVLASLYSGTVCIWNYHSQTTEKSVKVTDSP-VRTAKFVARE-------HWIVCGS--DD 80
++L++ T+C+W+ ++ T K +V D+ + T E H + GS DD
Sbjct: 200 YLLSASDDHTICLWDINA--TPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADD 257
Query: 81 KFIRVFD---YNTMASVKEFEAHEDYIRSLAVHPTFPFVL-TASDDKLIKLWDWEKNWEC 136
+ + ++D NT +AH + L+ +P F+L T S DK + LWD
Sbjct: 258 QKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLK 317
Query: 137 TQTFEGHSHYVMQSAFNPKDLNTFASASLDGTIQIWNMDSSAAKFTLDAHEKGINCIDYF 196
+FE H + Q ++P + AS+ D + +W++ + + + E G
Sbjct: 318 LHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDG------- 370
Query: 197 ITSDKVYLITGSDDFTVKVWDYETKTCVQILEGHTNNVTAVCFHP-ELRIIITASEDGTI 255
++ I G GHT ++ ++P E II + SED +
Sbjct: 371 --PPELLFIHG---------------------GHTAKISDFSWNPNEPWIICSVSEDNIM 407
Query: 256 LIW 258
+W
Sbjct: 408 QVW 410
Score = 38.9 bits (89), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 38/153 (24%), Positives = 64/153 (41%), Gaps = 19/153 (12%)
Query: 41 VCIWNYHSQTTEKSVKVTDS---PVRTAKFVAREHWIVC-GSDDKFIRVFDY-NTMASVK 95
+ IW+ + T K D+ V F +I+ GS DK + ++D N +
Sbjct: 260 LMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLH 319
Query: 96 EFEAHEDYIRSLAVHPTFPFVLTASD-DKLIKLWDWEKNWECTQTFE------------- 141
FE+H+D I + P +L +S D+ + +WD K E T +
Sbjct: 320 SFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHG 379
Query: 142 GHSHYVMQSAFNPKDLNTFASASLDGTIQIWNM 174
GH+ + ++NP + S S D +Q+W M
Sbjct: 380 GHTAKISDFSWNPNEPWIICSVSEDNIMQVWQM 412
>pdb|4GGD|A Chain A, Structural Analysis Of Human Cdc20 Supports Multisite
Degron Recognition By ApcC.
pdb|4GGD|B Chain B, Structural Analysis Of Human Cdc20 Supports Multisite
Degron Recognition By ApcC
Length = 431
Score = 61.6 bits (148), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 60/258 (23%), Positives = 102/258 (39%), Gaps = 13/258 (5%)
Query: 7 LQIEKEFIQKSDRVKSVDFHPTQPWVLASLYSGTVCIWNYHSQTTEKSVKVTDSPVRTAK 66
LQ+E Q + + SV + ++ S V +W+ Q +++ T R
Sbjct: 152 LQME----QPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNM--TSHSARVGS 205
Query: 67 FVAREHWIVCGSDDKFIRVFDYNTMAS-VKEFEAHEDYIRSLAVHPTFPFVLTASDDKLI 125
+ + GS I D V H + L P + + +D L+
Sbjct: 206 LSWNSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLV 265
Query: 126 KLWD---WEKNWECTQTFEGHSHYVMQSAFNPKDLNTFASA--SLDGTIQIWNMDSSAAK 180
+W E W QTF H V A+ P N A+ + D I+IWN+ S A
Sbjct: 266 NVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACL 325
Query: 181 FTLDAHEKGINCIDYFITSDKVYLITGSDDFTVKVWDYETKTCVQILEGHTNNVTAVCFH 240
+DAH + + I + ++ G + +W Y T V L+GHT+ V ++
Sbjct: 326 SAVDAHSQ-VCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMS 384
Query: 241 PELRIIITASEDGTILIW 258
P+ + +A+ D T+ +W
Sbjct: 385 PDGATVASAAADETLRLW 402
>pdb|3C99|A Chain A, Structural Basis Of Histone H4 Recognition By P55
pdb|3C9C|A Chain A, Structural Basis Of Histone H4 Recognition By P55
Length = 432
Score = 61.2 bits (147), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 55/199 (27%), Positives = 88/199 (44%), Gaps = 23/199 (11%)
Query: 83 IRVFDYNTMASVKE----------FEAHEDYIRSLAVHPTF-PFVLTASDDKLIKLWD-- 129
+ VFDY S E H+ L+ +P ++L+ASDD I LWD
Sbjct: 155 VLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDIN 214
Query: 130 ----WEKNWECTQTFEGHSHYVMQSAFNPKDLNTFASASLDGTIQIW---NMDSSAAKFT 182
+ + F GH+ V A++ + F S + D + IW N ++S T
Sbjct: 215 ATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHT 274
Query: 183 LDAHEKGINCIDYFITSDKVYLITGSDDFTVKVWDYET-KTCVQILEGHTNNVTAVCFHP 241
+DAH +NC+ + S+ + L TGS D TV +WD K + E H + + V + P
Sbjct: 275 VDAHTAEVNCLSFNPYSEFI-LATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSP 333
Query: 242 ELRIIITAS-EDGTILIWN 259
I+ +S D + +W+
Sbjct: 334 HNETILASSGTDRRLHVWD 352
Score = 48.5 bits (114), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 55/243 (22%), Positives = 100/243 (41%), Gaps = 47/243 (19%)
Query: 31 WVLASLYSGTVCIWNYHSQTTEKSVKVTDSP-VRTAKFVARE-------HWIVCGS--DD 80
++L++ T+C+W+ ++ T K +V D+ + T E H + GS DD
Sbjct: 198 YLLSASDDHTICLWDINA--TPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADD 255
Query: 81 KFIRVFDY---NTMASVKEFEAHEDYIRSLAVHPTFPFVL-TASDDKLIKLWDWEKNWEC 136
+ + ++D NT +AH + L+ +P F+L T S DK + LWD
Sbjct: 256 QKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLK 315
Query: 137 TQTFEGHSHYVMQSAFNPKDLNTFASASLDGTIQIWNMDSSAAKFTLDAHEKGINCIDYF 196
+FE H + Q ++P + AS+ D + +W++ + + + E G
Sbjct: 316 LHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDG------- 368
Query: 197 ITSDKVYLITGSDDFTVKVWDYETKTCVQILEGHTNNVTAVCFHP-ELRIIITASEDGTI 255
++ I G GHT ++ ++P E II + SED +
Sbjct: 369 --PPELLFIHG---------------------GHTAKISDFSWNPNEPWIICSVSEDNIM 405
Query: 256 LIW 258
+W
Sbjct: 406 QVW 408
Score = 38.9 bits (89), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 38/153 (24%), Positives = 64/153 (41%), Gaps = 19/153 (12%)
Query: 41 VCIWNYHSQTTEKSVKVTDS---PVRTAKFVAREHWIVC-GSDDKFIRVFDY-NTMASVK 95
+ IW+ + T K D+ V F +I+ GS DK + ++D N +
Sbjct: 258 LMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLH 317
Query: 96 EFEAHEDYIRSLAVHPTFPFVLTASD-DKLIKLWDWEKNWECTQTFE------------- 141
FE+H+D I + P +L +S D+ + +WD K E T +
Sbjct: 318 SFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHG 377
Query: 142 GHSHYVMQSAFNPKDLNTFASASLDGTIQIWNM 174
GH+ + ++NP + S S D +Q+W M
Sbjct: 378 GHTAKISDFSWNPNEPWIICSVSEDNIMQVWQM 410
>pdb|2XYI|A Chain A, Crystal Structure Of Nurf55 In Complex With A H4 Peptide
Length = 430
Score = 61.2 bits (147), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 55/199 (27%), Positives = 88/199 (44%), Gaps = 23/199 (11%)
Query: 83 IRVFDYNTMASVKE----------FEAHEDYIRSLAVHPTF-PFVLTASDDKLIKLWD-- 129
+ VFDY S E H+ L+ +P ++L+ASDD I LWD
Sbjct: 153 VLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDIN 212
Query: 130 ----WEKNWECTQTFEGHSHYVMQSAFNPKDLNTFASASLDGTIQIW---NMDSSAAKFT 182
+ + F GH+ V A++ + F S + D + IW N ++S T
Sbjct: 213 ATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHT 272
Query: 183 LDAHEKGINCIDYFITSDKVYLITGSDDFTVKVWDYET-KTCVQILEGHTNNVTAVCFHP 241
+DAH +NC+ + S+ + L TGS D TV +WD K + E H + + V + P
Sbjct: 273 VDAHTAEVNCLSFNPYSEFI-LATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSP 331
Query: 242 ELRIIITAS-EDGTILIWN 259
I+ +S D + +W+
Sbjct: 332 HNETILASSGTDRRLHVWD 350
Score = 48.5 bits (114), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 55/243 (22%), Positives = 100/243 (41%), Gaps = 47/243 (19%)
Query: 31 WVLASLYSGTVCIWNYHSQTTEKSVKVTDSP-VRTAKFVARE-------HWIVCGS--DD 80
++L++ T+C+W+ ++ T K +V D+ + T E H + GS DD
Sbjct: 196 YLLSASDDHTICLWDINA--TPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADD 253
Query: 81 KFIRVFD---YNTMASVKEFEAHEDYIRSLAVHPTFPFVL-TASDDKLIKLWDWEKNWEC 136
+ + ++D NT +AH + L+ +P F+L T S DK + LWD
Sbjct: 254 QKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLK 313
Query: 137 TQTFEGHSHYVMQSAFNPKDLNTFASASLDGTIQIWNMDSSAAKFTLDAHEKGINCIDYF 196
+FE H + Q ++P + AS+ D + +W++ + + + E G
Sbjct: 314 LHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDG------- 366
Query: 197 ITSDKVYLITGSDDFTVKVWDYETKTCVQILEGHTNNVTAVCFHP-ELRIIITASEDGTI 255
++ I G GHT ++ ++P E II + SED +
Sbjct: 367 --PPELLFIHG---------------------GHTAKISDFSWNPNEPWIICSVSEDNIM 403
Query: 256 LIW 258
+W
Sbjct: 404 QVW 406
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 38/153 (24%), Positives = 64/153 (41%), Gaps = 19/153 (12%)
Query: 41 VCIWNYHSQTTEKSVKVTDS---PVRTAKFVAREHWIVC-GSDDKFIRVFDY-NTMASVK 95
+ IW+ + T K D+ V F +I+ GS DK + ++D N +
Sbjct: 256 LMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLH 315
Query: 96 EFEAHEDYIRSLAVHPTFPFVLTASD-DKLIKLWDWEKNWECTQTFE------------- 141
FE+H+D I + P +L +S D+ + +WD K E T +
Sbjct: 316 SFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHG 375
Query: 142 GHSHYVMQSAFNPKDLNTFASASLDGTIQIWNM 174
GH+ + ++NP + S S D +Q+W M
Sbjct: 376 GHTAKISDFSWNPNEPWIICSVSEDNIMQVWQM 408
>pdb|2HES|X Chain X, Cytosolic Iron-sulphur Assembly Protein- 1
Length = 330
Score = 57.0 bits (136), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 41/140 (29%), Positives = 70/140 (50%), Gaps = 9/140 (6%)
Query: 84 RVFDYNTMASVKEFEAHEDYIRSLAVHPTFPFVLTASDDKLIKLWDWEKN---WECTQTF 140
R F+ + +A + E HE+ ++ +A ++ T S DK + +W+ +++ +EC
Sbjct: 93 RTFEMDLLAII---EGHENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGEEYECISVL 149
Query: 141 EGHSHYVMQSAFNPKDLNTFASASLDGTIQIWNM--DSSAAKFTLDAHEKGINCIDYFIT 198
+ HS V ++P + AS+S D T++IW D L+ HE + D+ T
Sbjct: 150 QEHSQDVKHVIWHPSEA-LLASSSYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKT 208
Query: 199 SDKVYLITGSDDFTVKVWDY 218
L +GSDD TV+VW Y
Sbjct: 209 EGVFRLCSGSDDSTVRVWKY 228
Score = 55.8 bits (133), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 53/204 (25%), Positives = 94/204 (46%), Gaps = 21/204 (10%)
Query: 74 IVCGSDDKFIRV----FDYNTMASVKEFEAHEDYIRSLAVHPTFPFVLTASDDKLIKLWD 129
+ GS D+ I++ +D T+ V + AH+ IRS+A P + S D + +W
Sbjct: 27 LATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRPHTSLLAAGSFDSTVSIWA 86
Query: 130 WEKNWECT------QTFEGHSHYVMQSAFNPKDLNTFASASLDGTIQIWNMDSSAAKF-- 181
E++ + T EGH + V A++ D A+ S D ++ IW D S ++
Sbjct: 87 KEESADRTFEMDLLAIIEGHENEVKGVAWS-NDGYYLATCSRDKSVWIWETDESGEEYEC 145
Query: 182 --TLDAHEKGINCIDYFITSDKVYLITGSDDFTVKVW-DYETK-TCVQILEGHTNNVTAV 237
L H + + + + + + L + S D TV++W DY+ CV +L GH V +
Sbjct: 146 ISVLQEHSQDVKHVIWHPS--EALLASSSYDDTVRIWKDYDDDWECVAVLNGHEGTVWSS 203
Query: 238 CFHPELRI--IITASEDGTILIWN 259
F + + + S+D T+ +W
Sbjct: 204 DFDKTEGVFRLCSGSDDSTVRVWK 227
Score = 55.8 bits (133), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 46/173 (26%), Positives = 80/173 (46%), Gaps = 18/173 (10%)
Query: 142 GHSHYVMQSAFNPKDLNTFASASLDGTIQIWNMDSSAAK-FTLD------AHEKGINCID 194
H + A+ P + A+ S D T+ IW + SA + F +D HE + +
Sbjct: 56 AHKKAIRSVAWRPH-TSLLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVA 114
Query: 195 YFITSDKVYLITGSDDFTVKVWDY----ETKTCVQILEGHTNNVTAVCFHPELRIIITAS 250
+ ++D YL T S D +V +W+ E C+ +L+ H+ +V V +HP ++ ++S
Sbjct: 115 W--SNDGYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHVIWHPSEALLASSS 172
Query: 251 EDGTILIWN--ATTFRLQNTLSSGLERVWSIGYKK--GSNQVAFGCDNGTLIV 299
D T+ IW + L+ VWS + K G ++ G D+ T+ V
Sbjct: 173 YDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRV 225
Score = 31.2 bits (69), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 51/214 (23%), Positives = 77/214 (35%), Gaps = 46/214 (21%)
Query: 15 QKSDRVKSVDFHPTQPWVLASLYSGTVCIWNYHSQTTE--KSVKVTDSPVRTAKFVARE- 71
+ S VK V +HP++ + +S Y TV IW + E + + V ++ F E
Sbjct: 151 EHSQDVKHVIWHPSEALLASSSYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEG 210
Query: 72 -HWIVCGSDDKFIRVFDYNTMASVKEFEAHEDYIRSLAVHPTFPFVLTASDDKLIKLWDW 130
+ GSDD +RV+ Y DD+ D
Sbjct: 211 VFRLCSGSDDSTVRVWKY------------------------------MGDDE-----DD 235
Query: 131 EKNWECTQTF-EGHSHYVMQSAFNPKDLNTFASASLDGTIQIW-NMDSSAAKFTLDAHEK 188
++ W C + H V A+ L AS DG + ++ +D F A
Sbjct: 236 QQEWVCEAILPDVHKRQVYNVAWGFNGL--IASVGADGVLAVYEEVDGEWKVFAKRALCH 293
Query: 189 G---INCIDYFITSDKVYLITGSDDFTVKVWDYE 219
G IN + + + K L TG DD V W E
Sbjct: 294 GVYEINVVKWLELNGKTILATGGDDGIVNFWSLE 327
>pdb|3CFS|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
Length = 414
Score = 55.1 bits (131), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 46/155 (29%), Positives = 72/155 (46%), Gaps = 12/155 (7%)
Query: 116 VLTASDDKLIKLWDWE------KNWECTQTFEGHSHYVMQSAFNPKDLNTFASASLDGTI 169
+L+ASDD + LWD K + F GHS V A++ + F S + D +
Sbjct: 195 LLSASDDHTVCLWDINAGPKEGKIVDAKAIFTGHSAVVEDVAWHLLHESLFGSVADDQKL 254
Query: 170 QIWNMDS---SAAKFTLDAHEKGINCIDYFITSDKVYLITGSDDFTVKVWDYET-KTCVQ 225
IW+ S S +DAH +NC+ + S+ + L TGS D TV +WD K +
Sbjct: 255 MIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYSEFI-LATGSADKTVALWDLRNLKLKLH 313
Query: 226 ILEGHTNNVTAVCFHPELRIIITAS-EDGTILIWN 259
E H + + V + P I+ +S D + +W+
Sbjct: 314 TFESHKDEIFQVHWSPHNETILASSGTDRRLNVWD 348
Score = 48.1 bits (113), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 54/241 (22%), Positives = 97/241 (40%), Gaps = 45/241 (18%)
Query: 32 VLASLYSGTVCIWNYHSQTTEKSVKVTDSPVRTAKFVARE-------HWIVCGS--DDKF 82
+L++ TVC+W+ ++ E + V + T E H + GS DD+
Sbjct: 195 LLSASDDHTVCLWDINAGPKEGKI-VDAKAIFTGHSAVVEDVAWHLLHESLFGSVADDQK 253
Query: 83 IRVFDYNTMASVKE---FEAHEDYIRSLAVHPTFPFVL-TASDDKLIKLWDWEKNWECTQ 138
+ ++D + + K +AH + L+ +P F+L T S DK + LWD
Sbjct: 254 LMIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLH 313
Query: 139 TFEGHSHYVMQSAFNPKDLNTFASASLDGTIQIWNMDSSAAKFTLDAHEKGINCIDYFIT 198
TFE H + Q ++P + AS+ D + +W++ + + + E G
Sbjct: 314 TFESHKDEIFQVHWSPHNETILASSGTDRRLNVWDLSKIGEEQSAEDAEDG--------- 364
Query: 199 SDKVYLITGSDDFTVKVWDYETKTCVQILEGHTNNVTAVCFHP-ELRIIITASEDGTILI 257
++ I G GHT ++ ++P E +I + SED + I
Sbjct: 365 PPELLFIHG---------------------GHTAKISDFSWNPNEPWVICSVSEDNIMQI 403
Query: 258 W 258
W
Sbjct: 404 W 404
Score = 41.6 bits (96), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 42/154 (27%), Positives = 67/154 (43%), Gaps = 21/154 (13%)
Query: 41 VCIWNYHSQTTEKSVKVTDS---PVRTAKFVAREHWIVC-GSDDKFIRVFDY-NTMASVK 95
+ IW+ S TT K + D+ V F +I+ GS DK + ++D N +
Sbjct: 254 LMIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLH 313
Query: 96 EFEAHEDYIRSLAVHPTFPFVLTASD-DKLIKLWDWEKNWECTQTFE------------- 141
FE+H+D I + P +L +S D+ + +WD K E Q+ E
Sbjct: 314 TFESHKDEIFQVHWSPHNETILASSGTDRRLNVWDLSKIGE-EQSAEDAEDGPPELLFIH 372
Query: 142 -GHSHYVMQSAFNPKDLNTFASASLDGTIQIWNM 174
GH+ + ++NP + S S D +QIW M
Sbjct: 373 GGHTAKISDFSWNPNEPWVICSVSEDNIMQIWQM 406
>pdb|3CFV|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
pdb|3CFV|A Chain A, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
Length = 414
Score = 55.1 bits (131), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 46/155 (29%), Positives = 72/155 (46%), Gaps = 12/155 (7%)
Query: 116 VLTASDDKLIKLWDWE------KNWECTQTFEGHSHYVMQSAFNPKDLNTFASASLDGTI 169
+L+ASDD + LWD K + F GHS V A++ + F S + D +
Sbjct: 195 LLSASDDHTVCLWDINAGPKEGKIVDAKAIFTGHSAVVEDVAWHLLHESLFGSVADDQKL 254
Query: 170 QIWNMDS---SAAKFTLDAHEKGINCIDYFITSDKVYLITGSDDFTVKVWDYET-KTCVQ 225
IW+ S S +DAH +NC+ + S+ + L TGS D TV +WD K +
Sbjct: 255 XIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYSEFI-LATGSADKTVALWDLRNLKLKLH 313
Query: 226 ILEGHTNNVTAVCFHPELRIIITAS-EDGTILIWN 259
E H + + V + P I+ +S D + +W+
Sbjct: 314 TFESHKDEIFQVHWSPHNETILASSGTDRRLNVWD 348
Score = 47.0 bits (110), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 54/241 (22%), Positives = 96/241 (39%), Gaps = 45/241 (18%)
Query: 32 VLASLYSGTVCIWNYHSQTTEKSVKVTDSPVRTAKFVARE-------HWIVCGS--DDKF 82
+L++ TVC+W+ ++ E + V + T E H + GS DD+
Sbjct: 195 LLSASDDHTVCLWDINAGPKEGKI-VDAKAIFTGHSAVVEDVAWHLLHESLFGSVADDQK 253
Query: 83 IRVFDYNTMASVKE---FEAHEDYIRSLAVHPTFPFVL-TASDDKLIKLWDWEKNWECTQ 138
+ ++D + + K +AH + L+ +P F+L T S DK + LWD
Sbjct: 254 LXIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLH 313
Query: 139 TFEGHSHYVMQSAFNPKDLNTFASASLDGTIQIWNMDSSAAKFTLDAHEKGINCIDYFIT 198
TFE H + Q ++P + AS+ D + +W++ + + + E G
Sbjct: 314 TFESHKDEIFQVHWSPHNETILASSGTDRRLNVWDLSKIGEEQSAEDAEDG--------- 364
Query: 199 SDKVYLITGSDDFTVKVWDYETKTCVQILEGHTNNVTAVCFHP-ELRIIITASEDGTILI 257
++ I G GHT ++ ++P E +I + SED I
Sbjct: 365 PPELLFIHG---------------------GHTAKISDFSWNPNEPWVICSVSEDNIXQI 403
Query: 258 W 258
W
Sbjct: 404 W 404
>pdb|3GFC|A Chain A, Crystal Structure Of Histone-Binding Protein Rbbp4
pdb|2XU7|A Chain A, Structural Basis For Rbap48 Binding To Fog-1
pdb|2XU7|B Chain B, Structural Basis For Rbap48 Binding To Fog-1
Length = 425
Score = 54.7 bits (130), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 53/199 (26%), Positives = 86/199 (43%), Gaps = 23/199 (11%)
Query: 83 IRVFDYNTMASVKE----------FEAHEDYIRSLAVHPTFP-FVLTASDDKLIKLWDWE 131
+ VFDY S + H+ L+ +P +L+ASDD I LWD
Sbjct: 149 VLVFDYTKHPSKPDPSGECNPDLRLRGHQKEGYGLSWNPNLSGHLLSASDDHTICLWDIS 208
Query: 132 ------KNWECTQTFEGHSHYVMQSAFNPKDLNTFASASLDGTIQIWNMDS---SAAKFT 182
K + F GH+ V +++ + F S + D + IW+ S S +
Sbjct: 209 AVPKEGKVVDAKTIFTGHTAVVEDVSWHLLHESLFGSVADDQKLMIWDTRSNNTSKPSHS 268
Query: 183 LDAHEKGINCIDYFITSDKVYLITGSDDFTVKVWDYET-KTCVQILEGHTNNVTAVCFHP 241
+DAH +NC+ + S+ + L TGS D TV +WD K + E H + + V + P
Sbjct: 269 VDAHTAEVNCLSFNPYSEFI-LATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSP 327
Query: 242 ELRIIITAS-EDGTILIWN 259
I+ +S D + +W+
Sbjct: 328 HNETILASSGTDRRLNVWD 346
Score = 46.2 bits (108), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 53/241 (21%), Positives = 95/241 (39%), Gaps = 45/241 (18%)
Query: 32 VLASLYSGTVCIWNYHSQTTEKSVKVTDSPVRTAKFVARE-------HWIVCGS--DDKF 82
+L++ T+C+W+ + E V V + T E H + GS DD+
Sbjct: 193 LLSASDDHTICLWDISAVPKEGKV-VDAKTIFTGHTAVVEDVSWHLLHESLFGSVADDQK 251
Query: 83 IRVFDY---NTMASVKEFEAHEDYIRSLAVHPTFPFVL-TASDDKLIKLWDWEKNWECTQ 138
+ ++D NT +AH + L+ +P F+L T S DK + LWD
Sbjct: 252 LMIWDTRSNNTSKPSHSVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLH 311
Query: 139 TFEGHSHYVMQSAFNPKDLNTFASASLDGTIQIWNMDSSAAKFTLDAHEKGINCIDYFIT 198
+FE H + Q ++P + AS+ D + +W++ + + + E G
Sbjct: 312 SFESHKDEIFQVQWSPHNETILASSGTDRRLNVWDLSKIGEEQSPEDAEDG--------- 362
Query: 199 SDKVYLITGSDDFTVKVWDYETKTCVQILEGHTNNVTAVCFHP-ELRIIITASEDGTILI 257
++ I G GHT ++ ++P E +I + SED + +
Sbjct: 363 PPELLFIHG---------------------GHTAKISDFSWNPNEPWVICSVSEDNIMQV 401
Query: 258 W 258
W
Sbjct: 402 W 402
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 41/154 (26%), Positives = 66/154 (42%), Gaps = 21/154 (13%)
Query: 41 VCIWNYHSQTTEK---SVKVTDSPVRTAKFVAREHWIVC-GSDDKFIRVFDY-NTMASVK 95
+ IW+ S T K SV + V F +I+ GS DK + ++D N +
Sbjct: 252 LMIWDTRSNNTSKPSHSVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLH 311
Query: 96 EFEAHEDYIRSLAVHPTFPFVLTASD-DKLIKLWDWEKNWECTQTFE------------- 141
FE+H+D I + P +L +S D+ + +WD K E Q+ E
Sbjct: 312 SFESHKDEIFQVQWSPHNETILASSGTDRRLNVWDLSKIGE-EQSPEDAEDGPPELLFIH 370
Query: 142 -GHSHYVMQSAFNPKDLNTFASASLDGTIQIWNM 174
GH+ + ++NP + S S D +Q+W M
Sbjct: 371 GGHTAKISDFSWNPNEPWVICSVSEDNIMQVWQM 404
Score = 38.1 bits (87), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 42/190 (22%), Positives = 78/190 (41%), Gaps = 26/190 (13%)
Query: 100 HEDYIRSLAVHPTFPFVL---TASDDKLIKLWDWEKN-------WECTQ--TFEGHSHYV 147
HE + P P ++ T S D L+ +D+ K+ EC GH
Sbjct: 123 HEGEVNRARYMPQNPCIIATKTPSSDVLV--FDYTKHPSKPDPSGECNPDLRLRGHQKEG 180
Query: 148 MQSAFNPKDLNTFASASLDGTIQIWNMDSSA-------AKFTLDAHEKGINCIDYFITSD 200
++NP SAS D TI +W++ + AK H + + + + +
Sbjct: 181 YGLSWNPNLSGHLLSASDDHTICLWDISAVPKEGKVVDAKTIFTGHTAVVEDVSWHLLHE 240
Query: 201 KVYLITGSDDFTVKVWDYETKTCVQI---LEGHTNNVTAVCFHPELRIII-TASEDGTIL 256
++ + +DD + +WD + + ++ HT V + F+P I+ T S D T+
Sbjct: 241 SLFG-SVADDQKLMIWDTRSNNTSKPSHSVDAHTAEVNCLSFNPYSEFILATGSADKTVA 299
Query: 257 IWNATTFRLQ 266
+W+ +L+
Sbjct: 300 LWDLRNLKLK 309
>pdb|3ODT|A Chain A, Crystal Structure Of Wd40 Beta Propeller Domain Of Doa1
pdb|3ODT|B Chain B, Crystal Structure Of Wd40 Beta Propeller Domain Of Doa1
Length = 313
Score = 54.7 bits (130), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 57/261 (21%), Positives = 105/261 (40%), Gaps = 17/261 (6%)
Query: 39 GTVCIWNYHSQTTEKSVKVTDSPVRTAKFVAREHWIVCGSDDKFIR---VFDYNTMASVK 95
GTV +W+ Q V + + + + + ++ G D I +F + +
Sbjct: 39 GTVRLWSKDDQWLGTVVYTGQGFLNSVCYDSEKELLLFGGKDTXINGVPLFATSGEDPLY 98
Query: 96 EFEAHEDYIRSLAVHPTFPFVLTASDDKLIKLWDWEKNWECTQTFEGHSHYVMQSAFNPK 155
H+ + SL+ V++ S DK K+W K + H+ V +
Sbjct: 99 TLIGHQGNVCSLSFQD--GVVISGSWDKTAKVW---KEGSLVYNLQAHNASVWDAKVVSF 153
Query: 156 DLNTFASASLDGTIQIWNMDSSAAKFTLDAHEKGI--NCIDYFITSDKVYLITGSDDFTV 213
N F +AS D TI++W D F+ GI + + + D + I+ S+D +
Sbjct: 154 SENKFLTASADKTIKLWQNDKVIKTFS------GIHNDVVRHLAVVDDGHFISCSNDGLI 207
Query: 214 KVWDYETKTCVQILEGHTNNVTAVCFHPELRIIITASEDGTILIWNATTFRLQNTLSSGL 273
K+ D T ++ EGH + V + P I+ + ED T+ IW+ L+ ++
Sbjct: 208 KLVDXHTGDVLRTYEGHESFVYCIKLLPNGDIV-SCGEDRTVRIWSKENGSLKQVITLPA 266
Query: 274 ERVWSIGYKKGSNQVAFGCDN 294
+WS+ + + DN
Sbjct: 267 ISIWSVDCXSNGDIIVGSSDN 287
Score = 32.7 bits (73), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 33/139 (23%), Positives = 60/139 (43%), Gaps = 11/139 (7%)
Query: 133 NWECTQTFEGHSHYVMQSAFNPKDLNTFASASLDGTIQIWNMDSSAAKFTLDAHEKGINC 192
++ + T +GH V + AS S DGT+++W+ D + + +N
Sbjct: 7 GYQLSATLKGHDQDVRDVVAVDD--SKVASVSRDGTVRLWSKDDQWLGTVVYTGQGFLNS 64
Query: 193 IDYFITSDKVYLITGSDDFT---VKVWDYETKTCVQILEGHTNNVTAVCFHPELRIIITA 249
+ Y S+K L+ G D V ++ + + L GH NV ++ F ++I+
Sbjct: 65 VCY--DSEKELLLFGGKDTXINGVPLFATSGEDPLYTLIGHQGNVCSLSFQD--GVVISG 120
Query: 250 SEDGTILIW--NATTFRLQ 266
S D T +W + + LQ
Sbjct: 121 SWDKTAKVWKEGSLVYNLQ 139
Score = 32.0 bits (71), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 38/147 (25%), Positives = 64/147 (43%), Gaps = 12/147 (8%)
Query: 116 VLTASDDKLIKLWDWEKNWECTQTFEGHSHYVMQSAFNPKDLNTFAS--ASLDGTIQIWN 173
V + S D ++LW + W T + G + K+L F ++G + ++
Sbjct: 32 VASVSRDGTVRLWSKDDQWLGTVVYTGQGFLNSVCYDSEKELLLFGGKDTXING-VPLFA 90
Query: 174 MDSSAAKFTLDAHEKGINCIDYFITSDKVYLITGSDDFTVKVWDYETKTCVQILEGHTNN 233
+TL H+ + + + D V +I+GS D T KVW + + V L+ H +
Sbjct: 91 TSGEDPLYTLIGHQGNVCSLSF---QDGV-VISGSWDKTAKVW--KEGSLVYNLQAHNAS 144
Query: 234 V--TAVCFHPELRIIITASEDGTILIW 258
V V E + +TAS D TI +W
Sbjct: 145 VWDAKVVSFSENK-FLTASADKTIKLW 170
>pdb|3ACP|A Chain A, Crystal Structure Of Yeast Rpn14, A Chaperone Of The 19s
Reg Particle Of The Proteasome
Length = 417
Score = 54.3 bits (129), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 50/188 (26%), Positives = 81/188 (43%), Gaps = 8/188 (4%)
Query: 18 DRVKSVDFHPTQPWVLASLYSGTVCIWNYHSQTTEKSVKVTD-SPVRTAKFVAREHWIVC 76
D K F + + G ++N + K +K D + V TAK R +
Sbjct: 54 DAGKGNTFEKVGSHLYKARLDGHDFLFNTIIRDGSKMLKRADYTAVDTAKLQMRR--FIL 111
Query: 77 GSDDKFIRVFDYNTMASVKEFEAHEDYIRSLAVHPTFPFVLTASDDKLIKLWDWEKNWEC 136
G+ + I+V D N + +AH I L P+ ++++S D +K+W K+
Sbjct: 112 GTTEGDIKVLDSNFNLQREIDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSV-KDGSN 170
Query: 137 TQTFEGHSHYVMQSAFNPKDLNTFASASLDGTIQIWNMDSSAAKFTLDAHEK---GINCI 193
+T GH V A + N SASLDGTI++W + T + E G+N I
Sbjct: 171 PRTLIGHRATVTDIAIIDRGRNVL-SASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSI 229
Query: 194 DYFITSDK 201
F+ +D+
Sbjct: 230 ALFVGTDR 237
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/106 (25%), Positives = 51/106 (48%), Gaps = 2/106 (1%)
Query: 157 LNTFASASLDGTIQIWNMDSSAAKFTLDAHEKGINCIDYFITSDKVYLITGSDDFTVKVW 216
+ F + +G I++ + + + + AH I + +F + + LI+ S D +K+W
Sbjct: 106 MRRFILGTTEGDIKVLDSNFNLQREIDQAHVSEITKLKFFPSGEA--LISSSQDMQLKIW 163
Query: 217 DYETKTCVQILEGHTNNVTAVCFHPELRIIITASEDGTILIWNATT 262
+ + + L GH VT + R +++AS DGTI +W T
Sbjct: 164 SVKDGSNPRTLIGHRATVTDIAIIDRGRNVLSASLDGTIRLWECGT 209
>pdb|3VL1|A Chain A, Crystal Structure Of Yeast Rpn14
pdb|3VL1|B Chain B, Crystal Structure Of Yeast Rpn14
Length = 420
Score = 54.3 bits (129), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 50/188 (26%), Positives = 81/188 (43%), Gaps = 8/188 (4%)
Query: 18 DRVKSVDFHPTQPWVLASLYSGTVCIWNYHSQTTEKSVKVTD-SPVRTAKFVAREHWIVC 76
D K F + + G ++N + K +K D + V TAK R +
Sbjct: 57 DAGKGNTFEKVGSHLYKARLDGHDFLFNTIIRDGSKMLKRADYTAVDTAKLQMRR--FIL 114
Query: 77 GSDDKFIRVFDYNTMASVKEFEAHEDYIRSLAVHPTFPFVLTASDDKLIKLWDWEKNWEC 136
G+ + I+V D N + +AH I L P+ ++++S D +K+W K+
Sbjct: 115 GTTEGDIKVLDSNFNLQREIDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSV-KDGSN 173
Query: 137 TQTFEGHSHYVMQSAFNPKDLNTFASASLDGTIQIWNMDSSAAKFTLDAHEK---GINCI 193
+T GH V A + N SASLDGTI++W + T + E G+N I
Sbjct: 174 PRTLIGHRATVTDIAIIDRGRNVL-SASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSI 232
Query: 194 DYFITSDK 201
F+ +D+
Sbjct: 233 ALFVGTDR 240
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/106 (25%), Positives = 51/106 (48%), Gaps = 2/106 (1%)
Query: 157 LNTFASASLDGTIQIWNMDSSAAKFTLDAHEKGINCIDYFITSDKVYLITGSDDFTVKVW 216
+ F + +G I++ + + + + AH I + +F + + LI+ S D +K+W
Sbjct: 109 MRRFILGTTEGDIKVLDSNFNLQREIDQAHVSEITKLKFFPSGEA--LISSSQDMQLKIW 166
Query: 217 DYETKTCVQILEGHTNNVTAVCFHPELRIIITASEDGTILIWNATT 262
+ + + L GH VT + R +++AS DGTI +W T
Sbjct: 167 SVKDGSNPRTLIGHRATVTDIAIIDRGRNVLSASLDGTIRLWECGT 212
>pdb|1PI6|A Chain A, Yeast Actin Interacting Protein 1 (Aip1), Orthorhombic
Crystal Form
Length = 615
Score = 53.9 bits (128), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 44/177 (24%), Positives = 82/177 (46%), Gaps = 11/177 (6%)
Query: 92 ASVKEFEAHEDYIRSLAVHP-TFPFVLTASDDKLIKLWDWEKNWECTQTFEGHSHYVMQS 150
AS + ++R + P + FV+T D+ I +D K+ E + E V
Sbjct: 197 ASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDG-KSGEFLKYIEDDQEPVQGG 255
Query: 151 AFNPK--DLNTFASASLDGTIQIWNMDSS--AAKFTLDAHEKGINCIDYFITSDKVYLIT 206
F D FA+ D TI++W++ +S K+TLD + G + T + +I+
Sbjct: 256 IFALSWLDSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNG-RIIS 314
Query: 207 GSDDFTVKVWDYETKTCVQILEGHTNNVTAVCFHPELRIIITASEDGTILIWNATTF 263
S D T+ ++ ++ + GH +TA+ +P +I+ S DG I+ W++++
Sbjct: 315 LSLDGTLNFYELGHDEVLKTISGHNKGITALTVNP----LISGSYDGRIMEWSSSSM 367
Score = 30.4 bits (67), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 42/163 (25%), Positives = 65/163 (39%), Gaps = 17/163 (10%)
Query: 62 VRTAKFV--AREHWIVCGSDDKFIRVFDYNTMASVKEFEAHEDYIR----SLAVHPTFPF 115
VR +F + E I GSD K I FD + +K E ++ ++ +L+ + F
Sbjct: 209 VRDVEFSPDSGEFVITVGSDRK-ISCFDGKSGEFLKYIEDDQEPVQGGIFALSWLDSQKF 267
Query: 116 VLTASDDKLIKLWDWEKNWECTQ--TFEGHSHYVMQSAFNPKDLNTFASASLDGTIQIWN 173
T D I++WD + +C Q T + Q S SLDGT+ +
Sbjct: 268 A-TVGADATIRVWDVTTS-KCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDGTLNFYE 325
Query: 174 MDSSAAKFTLDAHEKGINCIDYFITSDKVYLITGSDDFTVKVW 216
+ T+ H KGI + LI+GS D + W
Sbjct: 326 LGHDEVLKTISGHNKGITALTVN------PLISGSYDGRIMEW 362
>pdb|4A11|B Chain B, Structure Of The Hsddb1-Hscsa Complex
Length = 408
Score = 51.6 bits (122), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 39/174 (22%), Positives = 77/174 (44%), Gaps = 14/174 (8%)
Query: 100 HEDYIRSLAVHPT-FPFVLTASDDKLIKLWDWEKN-----WECTQTF-------EGHSHY 146
H I +L + P ++L+ D +I L+D E + + C + H +
Sbjct: 42 HGGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYS 101
Query: 147 VMQSAFNPKDLNTFASASLDGTIQIWNMDSSAAKFTLDAHEKGINCIDYFITSDKVYLIT 206
V + P D F S+S D T+++W+ ++ + E + +++ +
Sbjct: 102 VETVQWYPHDTGMFTSSSFDKTLKVWDTNTLQTADVFNFEETVYSHHMSPVSTKHCLVAV 161
Query: 207 GSDDFTVKVWDYETKTCVQILEGHTNNVTAVCFHPEL-RIIITASEDGTILIWN 259
G+ V++ D ++ +C IL+GH + AV + P I+ TAS D + +W+
Sbjct: 162 GTRGPKVQLCDLKSGSCSHILQGHRQEILAVSWSPRYDYILATASADSRVKLWD 215
Score = 48.1 bits (113), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 55/250 (22%), Positives = 105/250 (42%), Gaps = 38/250 (15%)
Query: 68 VAREHWIVC-GSDDKFIRVFDYNTMASVKEFEAHEDYIRSLAVHPTFPFVL-TASDDKLI 125
V+ +H +V G+ +++ D + + + H I +++ P + ++L TAS D +
Sbjct: 152 VSTKHCLVAVGTRGPKVQLCDLKSGSCSHILQGHRQEILAVSWSPRYDYILATASADSRV 211
Query: 126 KLWDWEKNWECTQTFEGHSHYVMQS------AFNPK--------DLNTFASASLDGTIQI 171
KLWD + C T + H+ Q+ A N K D + D +++
Sbjct: 212 KLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGTDNRMRL 271
Query: 172 WNMDSSAAKFTL-------DAHEKGIN-CIDYFITSDKVYLITGSDDFTVKVWDYETKTC 223
WN SS + TL + +KG+ + +S+ V++ GS T+ V+ +
Sbjct: 272 WN--SSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGS---TIAVYTVYSGEQ 326
Query: 224 VQILEGHTNNVTAVCFHPELRIIITASEDGTILIWNATTFR---------LQNTLSSGLE 274
+ +L+GH V F + + + S D IL W + + ++ L+ E
Sbjct: 327 ITMLKGHYKTVDCCVFQSNFQELYSGSRDCNILAWVPSLYEPVPDDDETTTKSQLNPAFE 386
Query: 275 RVWSIGYKKG 284
WS ++G
Sbjct: 387 DAWSSSDEEG 396
Score = 45.1 bits (105), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 37/157 (23%), Positives = 74/157 (47%), Gaps = 23/157 (14%)
Query: 80 DKFIRVFDYNTMASVKEFEAHEDYIRSLAVHPTFP---FVLTASDDKLIKLWDWEKNWEC 136
DK ++V+D NT+ + F E+ + S + P V + ++L D K+ C
Sbjct: 121 DKTLKVWDTNTLQTADVFN-FEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDL-KSGSC 178
Query: 137 TQTFEGHSHYVMQSAFNPKDLNTFASASLDGTIQIWNM-DSSAAKFTLD----------- 184
+ +GH ++ +++P+ A+AS D +++W++ +S TLD
Sbjct: 179 SHILQGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVE 238
Query: 185 ----AHEKGINCIDYFITSDKVYLITGSDDFTVKVWD 217
AH +N + + TSD ++L+T D +++W+
Sbjct: 239 SANTAHNGKVNGLCF--TSDGLHLLTVGTDNRMRLWN 273
>pdb|1NR0|A Chain A, Two Seven-Bladed Beta-Propeller Domains Revealed By The
Structure Of A C. Elegans Homologue Of Yeast Actin
Interacting Protein 1 (Aip1).
pdb|1PEV|A Chain A, Crystal Structure Of The Actin Interacting Protein From
Caenorhabditis Elegans
Length = 611
Score = 51.6 bits (122), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 49/201 (24%), Positives = 86/201 (42%), Gaps = 10/201 (4%)
Query: 69 AREHWIVCGSDDKFIRVFDYNTMASVKEFEAHEDYIRSLAVHPTFPFVLTASDDKLIKLW 128
+R I+ GSDD + +F+ F H ++ S+ +P + D I L+
Sbjct: 158 SRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLY 217
Query: 129 DWEKNWECTQTFE-------GHSHYVMQSAFNPKDLNTFASASLDGTIQIWNMDSSAAKF 181
+ + T FE HS V ++P D ASAS D TI+IWN+ + +
Sbjct: 218 NGVDGTK-TGVFEDDSLKNVAHSGSVFGLTWSP-DGTKIASASADKTIKIWNVATLKVEK 275
Query: 182 TLDAHEKGINCIDYFITSDKVYLITGSDDFTVKVWDYETKTCVQILEGHTNNVTAVCFHP 241
T+ + I I K L++ S + + + E + Q+ GH +TA+
Sbjct: 276 TIPVGTR-IEDQQLGIIWTKQALVSISANGFINFVNPELGSIDQVRYGHNKAITALSSSA 334
Query: 242 ELRIIITASEDGTILIWNATT 262
+ + + +A +G I W+ +T
Sbjct: 335 DGKTLFSADAEGHINSWDIST 355
Score = 41.2 bits (95), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 33/140 (23%), Positives = 56/140 (40%), Gaps = 9/140 (6%)
Query: 140 FEGHSHYVMQSAFNPKDLNTFASASLDGTIQIWNMDSSAAKFTLDAHEKGINCIDYFITS 199
G + + F P S S D T+ I+ K T H K ++ + Y
Sbjct: 143 LTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRY--NP 200
Query: 200 DKVYLITGSDDFTVKVWDYETKTCVQILE-------GHTNNVTAVCFHPELRIIITASED 252
D + D T+ +++ T + E H+ +V + + P+ I +AS D
Sbjct: 201 DGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASAD 260
Query: 253 GTILIWNATTFRLQNTLSSG 272
TI IWN T +++ T+ G
Sbjct: 261 KTIKIWNVATLKVEKTIPVG 280
Score = 37.0 bits (84), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 29/151 (19%), Positives = 69/151 (45%), Gaps = 6/151 (3%)
Query: 71 EHWIVCGSDDKFIRVFDYNTMASVKEFE--AHEDYIRSLAVHPTFPFVLTASDDKLIKLW 128
+ ++ G D + V+ + ASV E + H I S+A F++ + + +
Sbjct: 460 KQFVAVGGQDSKVHVYKL-SGASVSEVKTIVHPAEITSVAFSNNGAFLVATDQSRKVIPY 518
Query: 129 DWEKNWEC--TQTFEGHSHYVMQSAFNPKDLNTFASASLDGTIQIWNMDSSAAKFTLDAH 186
N+E T ++ H+ V +++P ++ A+ SLD ++ +WNM+ + +
Sbjct: 519 SVANNFELAHTNSWTFHTAKVACVSWSPDNVR-LATGSLDNSVIVWNMNKPSDHPIIIKG 577
Query: 187 EKGINCIDYFITSDKVYLITGSDDFTVKVWD 217
++ ++ I ++ +++ D +K W+
Sbjct: 578 AHAMSSVNSVIWLNETTIVSAGQDSNIKFWN 608
>pdb|1PGU|A Chain A, Yeast Actin Interacting Protein 1 (aip1), Se-met Protein,
Monoclinic Crystal Form
pdb|1PGU|B Chain B, Yeast Actin Interacting Protein 1 (aip1), Se-met Protein,
Monoclinic Crystal Form
Length = 615
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 44/172 (25%), Positives = 77/172 (44%), Gaps = 11/172 (6%)
Query: 92 ASVKEFEAHEDYIRSLAVHP-TFPFVLTASDDKLIKLWDWEKNWECTQTFEGHSHYVMQS 150
AS + ++R + P + FV+T D+ I +D K+ E + E V
Sbjct: 197 ASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFD-GKSGEFLKYIEDDQEPVQGG 255
Query: 151 AFNPK--DLNTFASASLDGTIQIWNMDSS--AAKFTLDAHEKGINCIDYFITSDKVYLIT 206
F D FA+ D TI++W++ +S K+TLD + G + T + +I+
Sbjct: 256 IFALSWLDSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNG-RIIS 314
Query: 207 GSDDFTVKVWDYETKTCVQILEGHTNNVTAVCFHPELRIIITASEDGTILIW 258
S D T+ ++ ++ + GH +TA+ +P +I+ S DG I W
Sbjct: 315 LSLDGTLNFYELGHDEVLKTISGHNKGITALTVNP----LISGSYDGRIXEW 362
Score = 33.9 bits (76), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 52/228 (22%), Positives = 83/228 (36%), Gaps = 22/228 (9%)
Query: 17 SDRVKSVDFHPTQ--PWVLASLYSGTVCIWNY----HSQTTEKSVK----VTDSPVRTAK 66
S V +V F P + ++ + SG V +W + S + E +VK V P+
Sbjct: 64 SSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDIS 123
Query: 67 --FVAREHWIVCGSDDKFIRVFDYNTMASVKEFEAHEDYIRSLAVHPTFPF-VLTASDDK 123
F R +V D F +++ S+ E H I + + + P T DD
Sbjct: 124 WDFEGRRLCVVGEGRDNFGVFISWDSGNSLGEVSGHSQRINACHLKQSRPXRSXTVGDDG 183
Query: 124 LIKLWDWE--KNWECTQTFEGHSHYVMQSAFNPKDLNTFASASLDGTIQIWNMDSSA-AK 180
+ + K +T +V F+P + D I ++ S K
Sbjct: 184 SVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLK 243
Query: 181 FTLDAHEK---GINCIDYFITSDKVYLITGSDDFTVKVWDYETKTCVQ 225
+ D E GI + + D T D T++VWD T CVQ
Sbjct: 244 YIEDDQEPVQGGIFALSWL---DSQKFATVGADATIRVWDVTTSKCVQ 288
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 42/163 (25%), Positives = 65/163 (39%), Gaps = 17/163 (10%)
Query: 62 VRTAKFV--AREHWIVCGSDDKFIRVFDYNTMASVKEFEAHEDYIR----SLAVHPTFPF 115
VR +F + E I GSD K I FD + +K E ++ ++ +L+ + F
Sbjct: 209 VRDVEFSPDSGEFVITVGSDRK-ISCFDGKSGEFLKYIEDDQEPVQGGIFALSWLDSQKF 267
Query: 116 VLTASDDKLIKLWDWEKNWECTQ--TFEGHSHYVMQSAFNPKDLNTFASASLDGTIQIWN 173
T D I++WD + +C Q T + Q S SLDGT+ +
Sbjct: 268 A-TVGADATIRVWDVTTS-KCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDGTLNFYE 325
Query: 174 MDSSAAKFTLDAHEKGINCIDYFITSDKVYLITGSDDFTVKVW 216
+ T+ H KGI + LI+GS D + W
Sbjct: 326 LGHDEVLKTISGHNKGITALTVN------PLISGSYDGRIXEW 362
>pdb|2PM9|B Chain B, Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT OF THE
Copii Vesicular Coat
Length = 297
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 52/207 (25%), Positives = 85/207 (41%), Gaps = 26/207 (12%)
Query: 78 SDDKFIRVFDYN--TMASVKEFEAHEDYI-RSLAVHPTFPFVLTA-SDDKLIKLWDWEKN 133
S DK I++F+ T + HE + R HP F +L + S D + +W E
Sbjct: 28 SSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVMIWKEENG 87
Query: 134 -WECTQTFEGHSHYVMQSAFNPKDLN-TFASASLDGTIQI--WNMDSSAAKFTLDAHEKG 189
W HS V + P + AS DG + + + + + + +DAH G
Sbjct: 88 RWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSPIIIDAHAIG 147
Query: 190 INCIDYFI-----------TSDKVYLITGSDDFTVKVWDY----ETKTCVQILEGHTNNV 234
+N + T + +TG D VK+W Y +T LEGH++ V
Sbjct: 148 VNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWV 207
Query: 235 TAVCFHPELRI---IITASEDGTILIW 258
V + P + + + + S+D T +IW
Sbjct: 208 RDVAWSPTVLLRSYMASVSQDRTCIIW 234
>pdb|2PM6|B Chain B, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Native Version
pdb|2PM6|D Chain D, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Native Version
pdb|3IKO|A Chain A, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3IKO|D Chain D, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3IKO|G Chain G, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3MZK|A Chain A, Sec13SEC16 COMPLEX, S.CEREVISIAE
pdb|3MZK|D Chain D, Sec13SEC16 COMPLEX, S.CEREVISIAE
pdb|3MZL|A Chain A, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|C Chain C, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|E Chain E, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|G Chain G, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
Length = 297
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 52/207 (25%), Positives = 85/207 (41%), Gaps = 26/207 (12%)
Query: 78 SDDKFIRVFDYN--TMASVKEFEAHEDYI-RSLAVHPTFPFVLTA-SDDKLIKLWDWEKN 133
S DK I++F+ T + HE + R HP F +L + S D + +W E
Sbjct: 28 SSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENG 87
Query: 134 -WECTQTFEGHSHYVMQSAFNPKDLNTFA-SASLDGTIQI--WNMDSSAAKFTLDAHEKG 189
W HS V + P + AS DG + + + + + + +DAH G
Sbjct: 88 RWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIG 147
Query: 190 INCIDYFI-----------TSDKVYLITGSDDFTVKVWDY----ETKTCVQILEGHTNNV 234
+N + T + +TG D VK+W Y +T LEGH++ V
Sbjct: 148 VNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWV 207
Query: 235 TAVCFHPELRI---IITASEDGTILIW 258
V + P + + + + S+D T +IW
Sbjct: 208 RDVAWSPTVLLRSYLASVSQDRTCIIW 234
>pdb|3JRP|A Chain A, Sec13 With Nup145c (Aa109-179) Insertion Blade
Length = 379
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 52/207 (25%), Positives = 86/207 (41%), Gaps = 26/207 (12%)
Query: 78 SDDKFIRVFDYN--TMASVKEFEAHEDYI-RSLAVHPTFPFVLTA-SDDKLIKLWDWEKN 133
S DK I++F+ T + HE + R HP F +L + S D + +W E
Sbjct: 30 SSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENG 89
Query: 134 -WECTQTFEGHSHYVMQSAFNPKDLNTFA-SASLDGTIQI--WNMDSSAAKFTLDAHEKG 189
W HS V + P + AS DG + + + + + + +DAH G
Sbjct: 90 RWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIG 149
Query: 190 INCI-----------DYFITSDKVYLITGSDDFTVKVWDY----ETKTCVQILEGHTNNV 234
+N ++ T + +TG D VK+W Y +T LEGH++ V
Sbjct: 150 VNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWV 209
Query: 235 TAVCFHPELRI---IITASEDGTILIW 258
V + P + + + + S+D T +IW
Sbjct: 210 RDVAWSPTVLLRSYLASVSQDRTCIIW 236
>pdb|4G56|B Chain B, Crystal Structure Of Full Length Prmt5/mep50 Complexes
From Xenopus Laevis
pdb|4G56|D Chain D, Crystal Structure Of Full Length Prmt5/mep50 Complexes
From Xenopus Laevis
Length = 357
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/102 (29%), Positives = 50/102 (49%), Gaps = 7/102 (6%)
Query: 163 ASLDGTIQIWNMDSSAA----KFTLDAHEKGINCIDYFITSDKVYLITGSDDFTVKVWDY 218
AS G +++W + + KF H+ + + F SD ++G DF+VKVWD
Sbjct: 111 ASDSGAVELWEILEKESLLVNKFAKYEHDDIVKTLSVF--SDGTQAVSGGKDFSVKVWDL 168
Query: 219 ETKTCVQILEGHTNNVTAVCFHP-ELRIIITASEDGTILIWN 259
K ++ H++ V V P + I ++ EDG IL+W+
Sbjct: 169 SQKAVLKSYNAHSSEVNCVAACPGKDTIFLSCGEDGRILLWD 210
Score = 48.5 bits (114), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 56/216 (25%), Positives = 92/216 (42%), Gaps = 8/216 (3%)
Query: 32 VLASLYSGTVCIWNY---HSQTTEKSVKVT-DSPVRTAKFVAREHWIVCGSDDKFIRVFD 87
+L + SG V +W S K K D V+T + V G D ++V+D
Sbjct: 108 ILVASDSGAVELWEILEKESLLVNKFAKYEHDDIVKTLSVFSDGTQAVSGGKDFSVKVWD 167
Query: 88 YNTMASVKEFEAHEDYIRSLAVHPTFPFV-LTASDDKLIKLWDWEKNWECTQTFEGHSHY 146
+ A +K + AH + +A P + L+ +D I LWD K T+ S
Sbjct: 168 LSQKAVLKSYNAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKPATRIDFCASDT 227
Query: 147 VMQSA-FNPKDLNTFASASLDGTIQIWNMDSSAAKFTLDAHEKGINCIDYFITSDKVYLI 205
+ S ++P+ +TFA G + + N+ + + T H + I + Y S +L
Sbjct: 228 IPTSVTWHPEKDDTFACGDETGNVSLVNIKNPDSAQTSAVHSQNITGLAYSYHSSP-FLA 286
Query: 206 TGSDDFTVKVWDYETKTCVQILEGHTNNVTAVCFHP 241
+ S+D TV V D + + L H + VT V + P
Sbjct: 287 SISEDCTVAVLDADFSEVFRDLS-HRDFVTGVAWSP 321
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/131 (24%), Positives = 63/131 (48%), Gaps = 5/131 (3%)
Query: 116 VLTASDDKLIKLWD-WEKNWECTQTFEGHSHY-VMQSAFNPKDLNTFASASLDGTIQIWN 173
+L ASD ++LW+ EK F + H ++++ D S D ++++W+
Sbjct: 108 ILVASDSGAVELWEILEKESLLVNKFAKYEHDDIVKTLSVFSDGTQAVSGGKDFSVKVWD 167
Query: 174 MDSSAAKFTLDAHEKGINCIDYFITSDKVYLITGSDDFTVKVWD-YETKTCVQILEGHTN 232
+ A + +AH +NC+ D ++L G +D + +WD + K +I ++
Sbjct: 168 LSQKAVLKSYNAHSSEVNCVAACPGKDTIFLSCG-EDGRILLWDTRKPKPATRIDFCASD 226
Query: 233 NV-TAVCFHPE 242
+ T+V +HPE
Sbjct: 227 TIPTSVTWHPE 237
>pdb|2PM7|B Chain B, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Selenomethionine Version
pdb|2PM7|D Chain D, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Selenomethionine Version
Length = 297
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 52/207 (25%), Positives = 84/207 (40%), Gaps = 26/207 (12%)
Query: 78 SDDKFIRVFDYN--TMASVKEFEAHEDYI-RSLAVHPTFPFVLTA-SDDKLIKLWDWEKN 133
S DK I++F+ T + HE + R HP F +L + S D + +W E
Sbjct: 28 SSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVXIWKEENG 87
Query: 134 -WECTQTFEGHSHYVMQSAFNPKDLN-TFASASLDGTIQI--WNMDSSAAKFTLDAHEKG 189
W HS V + P + AS DG + + + + + + +DAH G
Sbjct: 88 RWSQIAVHAVHSASVNSVQWAPHEYGPXLLVASSDGKVSVVEFKENGTTSPIIIDAHAIG 147
Query: 190 INCIDYFI-----------TSDKVYLITGSDDFTVKVWDY----ETKTCVQILEGHTNNV 234
+N + T + +TG D VK+W Y +T LEGH++ V
Sbjct: 148 VNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWV 207
Query: 235 TAVCFHPELRI---IITASEDGTILIW 258
V + P + + + S+D T +IW
Sbjct: 208 RDVAWSPTVLLRSYXASVSQDRTCIIW 234
>pdb|4GQB|B Chain B, Crystal Structure Of The Human Prmt5:mep50 Complex
Length = 344
Score = 49.3 bits (116), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 36/153 (23%), Positives = 67/153 (43%), Gaps = 10/153 (6%)
Query: 163 ASLDGTIQIWNMDSS----AAKFTLDAHEKGINCIDYFITSDKVYLITGSDDFTVKVWDY 218
AS G +++W +D + +KF H+ ++ + + S ++GS D +KVWD
Sbjct: 99 ASDSGAVELWELDENETLIVSKFCKYEHDDIVSTVS--VLSSGTQAVSGSKDICIKVWDL 156
Query: 219 ETKTCVQILEGHTNNVTAVCFHPEL-RIIITASEDGTILIWNATTFRLQNTL---SSGLE 274
+ + H VT V P + ++ SED IL+W+ + + + + G
Sbjct: 157 AQQVVLSSYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQIGCSAPGYL 216
Query: 275 RVWSIGYKKGSNQVAFGCDNGTLIVKIGNSSGC 307
+ + S FG +NGT+ + S+ C
Sbjct: 217 PTSLAWHPQQSEVFVFGDENGTVSLVDTKSTSC 249
Score = 48.9 bits (115), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 47/206 (22%), Positives = 89/206 (43%), Gaps = 17/206 (8%)
Query: 71 EHWIVCGSDDKFIRV--FDYNTMASVKEF--EAHEDYIRSLAVHPTFPFVLTASDDKLIK 126
E I+ SD + + D N V +F H+D + +++V + ++ S D IK
Sbjct: 93 ERGILVASDSGAVELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKDICIK 152
Query: 127 LWDWEKNWECTQTFEGHSHYVMQSAFNPKDLNTFASASLDGTIQIWNMDSSAAKFTLDAH 186
+WD + ++ H+ V A +P + F S S D I +W+ + A
Sbjct: 153 VWDLAQQ-VVLSSYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDT-----RCPKPAS 206
Query: 187 EKGINCIDYFITS------DKVYLITGSDDFTVKVWDYETKTCVQILEGHTNNVTAVCFH 240
+ G + Y TS + G ++ TV + D ++ +CV H+ VT + F
Sbjct: 207 QIGCSAPGYLPTSLAWHPQQSEVFVFGDENGTVSLVDTKSTSCVLSSAVHSQCVTGLVFS 266
Query: 241 P-ELRIIITASEDGTILIWNATTFRL 265
P + + + SED ++ + +++ L
Sbjct: 267 PHSVPFLASLSEDCSLAVLDSSLSEL 292
Score = 41.6 bits (96), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 45/192 (23%), Positives = 78/192 (40%), Gaps = 7/192 (3%)
Query: 32 VLASLYSGTVCIWNYHSQTTEKSVKVT----DSPVRTAKFVAREHWIVCGSDDKFIRVFD 87
+L + SG V +W T K D V T ++ V GS D I+V+D
Sbjct: 96 ILVASDSGAVELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWD 155
Query: 88 YNTMASVKEFEAHEDYIRSLAVHPTFPFV-LTASDDKLIKLWDWEKNWECTQTFEGHSHY 146
+ + AH + +A P V L+ S+D I LWD +Q Y
Sbjct: 156 LAQQVVLSSYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQIGCSAPGY 215
Query: 147 VMQS-AFNPKDLNTFASASLDGTIQIWNMDSSAAKFTLDAHEKGINCIDYFITSDKVYLI 205
+ S A++P+ F +GT+ + + S++ + H + + + F +L
Sbjct: 216 LPTSLAWHPQQSEVFVFGDENGTVSLVDTKSTSCVLSSAVHSQCVTGL-VFSPHSVPFLA 274
Query: 206 TGSDDFTVKVWD 217
+ S+D ++ V D
Sbjct: 275 SLSEDCSLAVLD 286
>pdb|3JRO|A Chain A, Nup84-Nup145c-Sec13 Edge Element Of The Npc Lattice
Length = 753
Score = 48.1 bits (113), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 52/207 (25%), Positives = 86/207 (41%), Gaps = 26/207 (12%)
Query: 78 SDDKFIRVFDYN--TMASVKEFEAHEDYI-RSLAVHPTFPFVLTA-SDDKLIKLWDWEK- 132
S DK I++F+ T + HE + R HP F +L + S D + +W E
Sbjct: 28 SSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENG 87
Query: 133 NWECTQTFEGHSHYVMQSAFNPKDLNTFA-SASLDGTIQI--WNMDSSAAKFTLDAHEKG 189
W HS V + P + AS DG + + + + + + +DAH G
Sbjct: 88 RWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIG 147
Query: 190 INCI-----------DYFITSDKVYLITGSDDFTVKVWDY----ETKTCVQILEGHTNNV 234
+N ++ T + +TG D VK+W Y +T LEGH++ V
Sbjct: 148 VNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWV 207
Query: 235 TAVCFHPELRI---IITASEDGTILIW 258
V + P + + + + S+D T +IW
Sbjct: 208 RDVAWSPTVLLRSYLASVSQDRTCIIW 234
>pdb|3BG0|A Chain A, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG0|D Chain D, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG0|E Chain E, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG0|H Chain H, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|A Chain A, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|D Chain D, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|E Chain E, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|H Chain H, Architecture Of A Coat For The Nuclear Pore Membrane
Length = 316
Score = 45.4 bits (106), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 53/184 (28%), Positives = 76/184 (41%), Gaps = 30/184 (16%)
Query: 26 HPTQPWVLASL-YSGTVCIWNYHSQTTEKSVKVT--DSPVRTAKFVAREHWIV--CGSDD 80
HP +LAS Y V IW + T EKS + DS V + + ++ ++ CGS D
Sbjct: 67 HPMYGNILASCSYDRKVIIWREENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSD 126
Query: 81 KFIRVFDYNTMAS--VKEFE------------AHEDYIRSLAVHPT------FPFVLTAS 120
I + Y VK+ A SL HP+ +
Sbjct: 127 GAISLLTYTGEGQWEVKKINNAHTIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGG 186
Query: 121 DDKLIKLWDWEKN--WECTQTFEGHSHYVMQSAFNPK---DLNTFASASLDGTIQIWNMD 175
D LIKLW E++ W+ Q E HS +V A+ P +T AS S DG + IW D
Sbjct: 187 CDNLIKLWKEEEDGQWKEEQKLEAHSDWVRDVAWAPSIGLPTSTIASCSQDGRVFIWTCD 246
Query: 176 SSAA 179
+++
Sbjct: 247 DASS 250
>pdb|4E54|B Chain B, Damaged Dna Induced Uv-Damaged Dna-Binding Protein
(Uv-Ddb) Dimerization And Its Roles In Chromatinized Dna
Repair
Length = 435
Score = 45.4 bits (106), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 53/237 (22%), Positives = 94/237 (39%), Gaps = 16/237 (6%)
Query: 68 VAREHW--IVCGSDDKFIRVFD-YNTMASVKEFEAHEDYIRSLAVHPTFP-FVLTASDDK 123
+ R W + G F+ D Y + F+ SLA HPT P V S
Sbjct: 86 LGRASWPSVQQGLQQSFLHTLDSYRILQKAAPFDRRAT---SLAWHPTHPSTVAVGSKGG 142
Query: 124 LIKLWDWE-KNWECTQTFEGHSHYVMQSAFNPKDLNTFASASLDGTIQIWNMDSSAAKFT 182
I LW++ K+ G + FNP + N F ++S++GT ++ + + +
Sbjct: 143 DIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYASSMEGTTRLQDFKGNILRVF 202
Query: 183 LDAHEKGINCIDYFITSDKVYLITGSDDFTVKVWDYETKTCVQILEGHTNNVTAVCFHPE 242
+ I +++ ++TG + V + + + K L H VT V +P
Sbjct: 203 ASSDTINIWFCSLDVSASSRMVVTGDNVGNVILLNMDGKELWN-LRMHKKKVTHVALNPC 261
Query: 243 LR-IIITASEDGTILIWNATTFRLQNTLSSGLERVWSIGYKKGSNQVAFGCDNGTLI 298
+ TAS D T+ IW+ R + + ++S+ ++ N F D L+
Sbjct: 262 CDWFLATASVDQTVKIWDLRQVRGKASF------LYSLPHRHPVNAACFSPDGARLL 312
>pdb|3GRE|A Chain A, Crystal Structure Of Saccharomyces Cerevisiae Vps15 Wd
Repeat Domain
Length = 437
Score = 45.4 bits (106), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 52/213 (24%), Positives = 91/213 (42%), Gaps = 45/213 (21%)
Query: 97 FEAHEDYIRSLAVHP-TFPFVLTASDDKLIKLWDWEK-----------NWECTQTFEGHS 144
E + I S AV P P+++T SD +IK+W+ ++ ++C+ T
Sbjct: 59 MENEPNSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGEVYSSSLTYDCSST----- 113
Query: 145 HYVMQSAFNPKDLNTFASASLDGTIQIWNMD----SSAAKFTLDAHEKGINCIDY----- 195
V Q P + + FA +S DG I + ++ S KF + IN ++
Sbjct: 114 --VTQITMIP-NFDAFAVSSKDGQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEY 170
Query: 196 ------FITSDKVYLITGSDDFTVKVWDYETKTCVQILEGHTNN--VTAVCFHPELRIII 247
F+ +K L+ ++ V ++D T +QI+E + V+++C E ++I
Sbjct: 171 AVRMRAFVNEEKSLLVALTNLSRVIIFDIRTLERLQIIENSPRHGAVSSICIDEECCVLI 230
Query: 248 TASEDGTILIWNATTFRLQNTLSSGLERVWSIG 280
+ G I IW+ F + L R WS G
Sbjct: 231 LGTTRGIIDIWD-IRFNV-------LIRSWSFG 255
Score = 28.5 bits (62), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 25/54 (46%), Gaps = 1/54 (1%)
Query: 221 KTCVQILEGHTNNVTAVCFHP-ELRIIITASEDGTILIWNATTFRLQNTLSSGL 273
K ++E N++T+ P E +IT S+ G I IWN + SS L
Sbjct: 53 KLIATLMENEPNSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGEVYSSSL 106
>pdb|3EI4|B Chain B, Structure Of The Hsddb1-Hsddb2 Complex
pdb|3EI4|D Chain D, Structure Of The Hsddb1-Hsddb2 Complex
pdb|3EI4|F Chain F, Structure Of The Hsddb1-Hsddb2 Complex
Length = 436
Score = 45.4 bits (106), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 53/237 (22%), Positives = 94/237 (39%), Gaps = 16/237 (6%)
Query: 68 VAREHW--IVCGSDDKFIRVFD-YNTMASVKEFEAHEDYIRSLAVHPTFP-FVLTASDDK 123
+ R W + G F+ D Y + F+ SLA HPT P V S
Sbjct: 87 LGRASWPSVQQGLQQSFLHTLDSYRILQKAAPFDRRAT---SLAWHPTHPSTVAVGSKGG 143
Query: 124 LIKLWDWE-KNWECTQTFEGHSHYVMQSAFNPKDLNTFASASLDGTIQIWNMDSSAAKFT 182
I LW++ K+ G + FNP + N F ++S++GT ++ + + +
Sbjct: 144 DIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYASSMEGTTRLQDFKGNILRVF 203
Query: 183 LDAHEKGINCIDYFITSDKVYLITGSDDFTVKVWDYETKTCVQILEGHTNNVTAVCFHPE 242
+ I +++ ++TG + V + + + K L H VT V +P
Sbjct: 204 ASSDTINIWFCSLDVSASSRMVVTGDNVGNVILLNMDGKELWN-LRMHKKKVTHVALNPC 262
Query: 243 LR-IIITASEDGTILIWNATTFRLQNTLSSGLERVWSIGYKKGSNQVAFGCDNGTLI 298
+ TAS D T+ IW+ R + + ++S+ ++ N F D L+
Sbjct: 263 CDWFLATASVDQTVKIWDLRQVRGKASF------LYSLPHRHPVNAACFSPDGARLL 313
>pdb|4E5Z|B Chain B, Damaged Dna Induced Uv-Damaged Dna-Binding Protein
(Uv-Ddb) Dimerization And Its Roles In Chromatinized Dna
Repair
Length = 436
Score = 45.1 bits (105), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 53/237 (22%), Positives = 94/237 (39%), Gaps = 16/237 (6%)
Query: 68 VAREHW--IVCGSDDKFIRVFD-YNTMASVKEFEAHEDYIRSLAVHPTFP-FVLTASDDK 123
+ R W + G F+ D Y + F+ SLA HPT P V S
Sbjct: 86 LGRASWPSVQQGLQQSFLHTLDSYRILQKAAPFDRRAT---SLAWHPTHPSTVAVGSKGG 142
Query: 124 LIKLWDWE-KNWECTQTFEGHSHYVMQSAFNPKDLNTFASASLDGTIQIWNMDSSAAKFT 182
I LW++ K+ G + FNP + N F ++S++GT ++ + + +
Sbjct: 143 DIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYASSMEGTTRLQDFKGNILRVF 202
Query: 183 LDAHEKGINCIDYFITSDKVYLITGSDDFTVKVWDYETKTCVQILEGHTNNVTAVCFHPE 242
+ I +++ ++TG + V + + + K L H VT V +P
Sbjct: 203 ASSDTINIWFCSLDVSASSRMVVTGDNVGNVILLNMDGKELWN-LRMHKKKVTHVALNPC 261
Query: 243 LR-IIITASEDGTILIWNATTFRLQNTLSSGLERVWSIGYKKGSNQVAFGCDNGTLI 298
+ TAS D T+ IW+ R + + ++S+ ++ N F D L+
Sbjct: 262 CDWFLATASVDQTVKIWDLRQVRGKASF------LYSLPHRHPVNAACFSPDGARLL 312
>pdb|2AQ5|A Chain A, Crystal Structure Of Murine Coronin-1
Length = 402
Score = 44.7 bits (104), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 32/125 (25%), Positives = 56/125 (44%), Gaps = 10/125 (8%)
Query: 142 GHSHYVMQSAFNPKDLNTFASASLDGTIQIWNMDSSA-------AKFTLDAHEKGINCID 194
GH+ V+ A+ P + N AS S D T+ +W + TL+ H K + +
Sbjct: 79 GHTAPVLDIAWXPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVA 138
Query: 195 YFITSDKVYLITGSDDFTVKVWDYETKTCVQIL--EGHTNNVTAVCFHPELRIIITASED 252
+ T+ V L G D+ + VWD T V L + H + + +V + + +I T+ D
Sbjct: 139 WHPTAQNVLLSAGXDN-VILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGALICTSCRD 197
Query: 253 GTILI 257
+ +
Sbjct: 198 KRVRV 202
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/117 (27%), Positives = 51/117 (43%), Gaps = 10/117 (8%)
Query: 116 VLTASDDKLIKLWDWEKNW------ECTQTFEGHSHYVMQSAFNPKDLNTFASASLDGTI 169
+ + S+D + +W+ E T EGH+ V A++P N SA D I
Sbjct: 97 IASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGXDNVI 156
Query: 170 QIWNMDSSAAKFTL--DAHEKGINCIDYFITSDKVYLITGSDDFTVKVWDYETKTCV 224
+W++ + AA TL D H I +D+ + D + T D V+V + T V
Sbjct: 157 LVWDVGTGAAVLTLGPDVHPDTIYSVDW--SRDGALICTSCRDKRVRVIEPRKGTVV 211
Score = 28.1 bits (61), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 23/92 (25%), Positives = 40/92 (43%), Gaps = 10/92 (10%)
Query: 224 VQILEGHTNNVTAVCFHPEL-RIIITASEDGTILIW----NATTFRLQN---TLSSGLER 275
V ++ GHT V + + P +I + SED T+++W L+ TL +R
Sbjct: 74 VPLVXGHTAPVLDIAWXPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKR 133
Query: 276 VWSIGYKKGSNQVAF--GCDNGTLIVKIGNSS 305
V + + + V G DN L+ +G +
Sbjct: 134 VGIVAWHPTAQNVLLSAGXDNVILVWDVGTGA 165
>pdb|1GXR|A Chain A, Wd40 Region Of Human Groucho/tle1
pdb|1GXR|B Chain B, Wd40 Region Of Human Groucho/tle1
pdb|2CE8|A Chain A, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|B Chain B, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|C Chain C, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|D Chain D, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|A Chain A, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|B Chain B, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|C Chain C, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|D Chain D, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain
Length = 337
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 33/129 (25%), Positives = 55/129 (42%), Gaps = 8/129 (6%)
Query: 100 HEDYIRSLAVHPTFPFVLTASDDKLIKLWDWE---KNWECTQTFEGHSHYVMQSAFNPKD 156
++YIRS + P ++ + + +WD + T + Y + A +P
Sbjct: 96 RDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYAL--AISPDS 153
Query: 157 LNTFASASLDGTIQIWNMDSSAAKFTLDAHEKGINCIDYFITSDKVYLITGSDDFTVKVW 216
F+ S DG I +W++ + H G +CID I++D L TG D TV+ W
Sbjct: 154 KVCFSCCS-DGNIAVWDLHNQTLVRQFQGHTDGASCID--ISNDGTKLWTGGLDNTVRSW 210
Query: 217 DYETKTCVQ 225
D +Q
Sbjct: 211 DLREGRQLQ 219
Score = 41.2 bits (95), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 28/134 (20%), Positives = 57/134 (42%), Gaps = 5/134 (3%)
Query: 168 TIQIWNMDSSAAKFTLDAHEKGINCIDYFITSDKVYLITGSDDFTVKVWDYETKTCVQIL 227
T+ IW++ + + + C I+ D + D + VWD +T V+
Sbjct: 120 TLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQF 179
Query: 228 EGHTNNVTAVCFHPELRIIITASEDGTILIWNATTFR--LQNTLSSGLERVWSIGYKKGS 285
+GHT+ + + + + T D T+ W+ R Q+ +S +++S+GY
Sbjct: 180 QGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHDFTS---QIFSLGYCPTG 236
Query: 286 NQVAFGCDNGTLIV 299
+A G ++ + V
Sbjct: 237 EWLAVGMESSNVEV 250
Score = 32.3 bits (72), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 24/131 (18%), Positives = 51/131 (38%), Gaps = 2/131 (1%)
Query: 10 EKEFIQKSDRVKSVDFHPTQPWVLASLYSGTVCIWNYHSQTTEKSVKVTDSPVRTAKFVA 69
+ + + + + ++S P ++ + T+ IW+ + T ++T S
Sbjct: 90 QLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAI 149
Query: 70 REHWIVCGS--DDKFIRVFDYNTMASVKEFEAHEDYIRSLAVHPTFPFVLTASDDKLIKL 127
VC S D I V+D + V++F+ H D + + + T D ++
Sbjct: 150 SPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRS 209
Query: 128 WDWEKNWECTQ 138
WD + + Q
Sbjct: 210 WDLREGRQLQQ 220
>pdb|2B4E|A Chain A, Crystal Structure Of Murine Coronin-1: Monoclinic Form
Length = 402
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 32/125 (25%), Positives = 56/125 (44%), Gaps = 10/125 (8%)
Query: 142 GHSHYVMQSAFNPKDLNTFASASLDGTIQIWNMDSSA-------AKFTLDAHEKGINCID 194
GH+ V+ A+ P + N AS S D T+ +W + TL+ H K + +
Sbjct: 79 GHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVA 138
Query: 195 YFITSDKVYLITGSDDFTVKVWDYETKTCVQIL--EGHTNNVTAVCFHPELRIIITASED 252
+ T+ V L G D+ + VWD T V L + H + + +V + + +I T+ D
Sbjct: 139 WHPTAQNVLLSAGCDN-VILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGALICTSCRD 197
Query: 253 GTILI 257
+ +
Sbjct: 198 KRVRV 202
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/117 (27%), Positives = 51/117 (43%), Gaps = 10/117 (8%)
Query: 116 VLTASDDKLIKLWDWEKNW------ECTQTFEGHSHYVMQSAFNPKDLNTFASASLDGTI 169
+ + S+D + +W+ E T EGH+ V A++P N SA D I
Sbjct: 97 IASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVI 156
Query: 170 QIWNMDSSAAKFTL--DAHEKGINCIDYFITSDKVYLITGSDDFTVKVWDYETKTCV 224
+W++ + AA TL D H I +D+ + D + T D V+V + T V
Sbjct: 157 LVWDVGTGAAVLTLGPDVHPDTIYSVDW--SRDGALICTSCRDKRVRVIEPRKGTVV 211
Score = 30.4 bits (67), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 41/92 (44%), Gaps = 10/92 (10%)
Query: 224 VQILEGHTNNVTAVCFHPEL-RIIITASEDGTILIW----NATTFRLQN---TLSSGLER 275
V ++ GHT V + + P +I + SED T+++W L+ TL +R
Sbjct: 74 VPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKR 133
Query: 276 VWSIGYKKGSNQVAF--GCDNGTLIVKIGNSS 305
V + + + V GCDN L+ +G +
Sbjct: 134 VGIVAWHPTAQNVLLSAGCDNVILVWDVGTGA 165
>pdb|3JPX|A Chain A, Eed: A Novel Histone Trimethyllysine Binder Within The
Eed-Ezh2 Polycomb Complex
pdb|3JZG|A Chain A, Structure Of Eed In Complex With H3k27me3
pdb|3JZH|A Chain A, Eed-H3k79me3
Length = 402
Score = 43.5 bits (101), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/120 (21%), Positives = 60/120 (50%), Gaps = 6/120 (5%)
Query: 112 TFPFVLTASDDKLIKLWDWEKNWECTQTFEGHSHYVMQSAFNPKDLNTFASASLDGTIQI 171
+ P + A +I++ + +C + + GH + + + F+P+D N S S D +++
Sbjct: 120 SHPLLAVAGSRGIIRIIN-PITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRL 178
Query: 172 WNM--DSSAAKF-TLDAHEKGINCIDYFITSDKVYLITGSDDFTVKVWDYETKTCVQILE 228
WN+ D+ A F ++ H + DY + +K+ ++ D ++K+W +K + ++
Sbjct: 179 WNIQTDTLVAIFGGVEGHRDEVLSADYDLLGEKI--MSCGMDHSLKLWRINSKRMMNAIK 236
Score = 41.2 bits (95), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 33/140 (23%), Positives = 57/140 (40%), Gaps = 27/140 (19%)
Query: 42 CIWNYHSQTTEKSVKVTDSPVRTAKFVAREHWIVCGSDDKFIRVFDYNTMASVKEFEAHE 101
C W Y S T+ + V S IR+ + TM +K + H
Sbjct: 111 CAWTYDSNTSHPLLAVAGS-------------------RGIIRIINPITMQCIKHYVGHG 151
Query: 102 DYIRSLAVHPTFP-FVLTASDDKLIKLWDWEKNWECT--QTFEGHSHYVMQSAFNPKDL- 157
+ I L HP P +L+ S D ++LW+ + + EGH V+ + + DL
Sbjct: 152 NAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADY---DLL 208
Query: 158 -NTFASASLDGTIQIWNMDS 176
S +D ++++W ++S
Sbjct: 209 GEKIMSCGMDHSLKLWRINS 228
Score = 37.0 bits (84), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 28/113 (24%), Positives = 50/113 (44%), Gaps = 4/113 (3%)
Query: 160 FASASLDGTIQIWNMDSSAAKFTLDAHEKGINCIDYFITSDKVYLITGSDDFTVKVWDYE 219
A A G I+I N + H IN + F D L++ S D +++W+ +
Sbjct: 124 LAVAGSRGIIRIINPITMQCIKHYVGHGNAINELK-FHPRDPNLLLSVSKDHALRLWNIQ 182
Query: 220 TKTCVQI---LEGHTNNVTAVCFHPELRIIITASEDGTILIWNATTFRLQNTL 269
T T V I +EGH + V + + I++ D ++ +W + R+ N +
Sbjct: 183 TDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAI 235
Score = 33.5 bits (75), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 17/66 (25%), Positives = 35/66 (53%), Gaps = 2/66 (3%)
Query: 198 TSDKVYLITGSDDFTVKVWDYETKTCVQILEGHTNNVTAVCFHP-ELRIIITASEDGTIL 256
TS + + GS +++ + T C++ GH N + + FHP + ++++ S+D +
Sbjct: 119 TSHPLLAVAGSRGI-IRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALR 177
Query: 257 IWNATT 262
+WN T
Sbjct: 178 LWNIQT 183
>pdb|4AEZ|A Chain A, Crystal Structure Of Mitotic Checkpoint Complex
pdb|4AEZ|D Chain D, Crystal Structure Of Mitotic Checkpoint Complex
pdb|4AEZ|G Chain G, Crystal Structure Of Mitotic Checkpoint Complex
Length = 401
Score = 43.5 bits (101), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 52/248 (20%), Positives = 98/248 (39%), Gaps = 9/248 (3%)
Query: 16 KSDRVKSVDFHPTQPWVLASLYSGTVCIWNYHSQTTEKSVKVTDSPVRTAKFVAREHWIV 75
+S V SV + ++ L +G V I++ SQT +++ R H +
Sbjct: 133 ESTYVASVKWSHDGSFLSVGLGNGLVDIYDVESQTKLRTM--AGHQARVGCLSWNRHVLS 190
Query: 76 CGSDDKFIRVFDYNTMA-SVKEFEAHEDYIRSLAVHPTFPFVLTASDDKLIKLWDWEKNW 134
GS I D + + H + LA + + +D ++++WD ++
Sbjct: 191 SGSRSGAIHHHDVRIANHQIGTLQGHSSEVCGLAWRSDGLQLASGGNDNVVQIWD-ARSS 249
Query: 135 ECTQTFEGHSHYVMQSAFNPKDLNTFASA--SLDGTIQIWNMDSSAAKFTLDAHEKGINC 192
T H+ V A+ P N A+ ++D I WN + A T+DA + +
Sbjct: 250 IPKFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGARVNTVDAGSQ-VTS 308
Query: 193 IDYFITSDKVYLITGSDDFTVKVWDYETKTCVQILE--GHTNNVTAVCFHPELRIIITAS 250
+ + S ++ G D + +W Y + + ++ H V P+ RI+ TA+
Sbjct: 309 LIWSPHSKEIMSTHGFPDNNLSIWSYSSSGLTKQVDIPAHDTRVLYSALSPDGRILSTAA 368
Query: 251 EDGTILIW 258
D + W
Sbjct: 369 SDENLKFW 376
Score = 41.2 bits (95), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 49/238 (20%), Positives = 96/238 (40%), Gaps = 8/238 (3%)
Query: 32 VLASLYSGTVCIWNYHSQTTEKSVKVTDSP-VRTAKFVAREHWIVCGSDDKFIRVFDYNT 90
V+A V +WN S + + +S V + K+ ++ G + + ++D +
Sbjct: 106 VVAVALERNVYVWNADSGSVSALAETDESTYVASVKWSHDGSFLSVGLGNGLVDIYDVES 165
Query: 91 MASVKEFEAHEDYIRSLAVHPTFPFVLTASDDKLIKLWDWEKNWECTQTFEGHSHYVMQS 150
++ H+ + L+ + + + S I D T +GHS V
Sbjct: 166 QTKLRTMAGHQARVGCLSWNRHV--LSSGSRSGAIHHHDVRIANHQIGTLQGHSSEVCGL 223
Query: 151 AFNPKDLNTFASASLDGTIQIWNMDSSAAKFTLDAHEKGINCIDYFI-TSDKVYLITGSD 209
A+ L AS D +QIW+ SS KFT H + + + S+ + G+
Sbjct: 224 AWRSDGLQ-LASGGNDNVVQIWDARSSIPKFTKTNHNAAVKAVAWCPWQSNLLATGGGTM 282
Query: 210 DFTVKVWDYETKTCVQILEGHTNNVTAVCFHPELRIIITAS--EDGTILIWNATTFRL 265
D + W+ T V ++ + VT++ + P + I++ D + IW+ ++ L
Sbjct: 283 DKQIHFWNAATGARVNTVDAGS-QVTSLIWSPHSKEIMSTHGFPDNNLSIWSYSSSGL 339
Score = 35.8 bits (81), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 39/162 (24%), Positives = 67/162 (41%), Gaps = 10/162 (6%)
Query: 115 FVLTASDDKLIKLWDWEKNWECTQTFEGHSHYVMQSAFNPKDLNTFASASLDGTIQIWNM 174
F+ + L+ ++D E + +T GH V ++N + +S S G I ++
Sbjct: 148 FLSVGLGNGLVDIYDVESQTKL-RTMAGHQARVGCLSWN---RHVLSSGSRSGAIHHHDV 203
Query: 175 DSSAAKF-TLDAHEKGINCIDYFITSDKVYLITGSDDFTVKVWDYETKTCVQILEGHTNN 233
+ + TL H + + + SD + L +G +D V++WD + H
Sbjct: 204 RIANHQIGTLQGHSSEVCGLAW--RSDGLQLASGGNDNVVQIWDARSSIPKFTKTNHNAA 261
Query: 234 VTAVCFHP---ELRIIITASEDGTILIWNATTFRLQNTLSSG 272
V AV + P L + D I WNA T NT+ +G
Sbjct: 262 VKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGARVNTVDAG 303
>pdb|2QXV|A Chain A, Structural Basis Of Ezh2 Recognition By Eed
Length = 361
Score = 43.5 bits (101), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/120 (21%), Positives = 60/120 (50%), Gaps = 6/120 (5%)
Query: 112 TFPFVLTASDDKLIKLWDWEKNWECTQTFEGHSHYVMQSAFNPKDLNTFASASLDGTIQI 171
+ P + A +I++ + +C + + GH + + + F+P+D N S S D +++
Sbjct: 79 SHPLLAVAGSRGIIRIIN-PITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRL 137
Query: 172 WNM--DSSAAKF-TLDAHEKGINCIDYFITSDKVYLITGSDDFTVKVWDYETKTCVQILE 228
WN+ D+ A F ++ H + DY + +K+ ++ D ++K+W +K + ++
Sbjct: 138 WNIQTDTLVAIFGGVEGHRDEVLSADYDLLGEKI--MSCGMDHSLKLWRINSKRMMNAIK 195
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/138 (22%), Positives = 56/138 (40%), Gaps = 23/138 (16%)
Query: 42 CIWNYHSQTTEKSVKVTDSPVRTAKFVAREHWIVCGSDDKFIRVFDYNTMASVKEFEAHE 101
C W Y S T+ + V S IR+ + TM +K + H
Sbjct: 70 CAWTYDSNTSHPLLAVAGS-------------------RGIIRIINPITMQCIKHYVGHG 110
Query: 102 DYIRSLAVHPTFP-FVLTASDDKLIKLWDWEKNWECT--QTFEGHSHYVMQSAFNPKDLN 158
+ I L HP P +L+ S D ++LW+ + + EGH V+ + ++
Sbjct: 111 NAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLLG-E 169
Query: 159 TFASASLDGTIQIWNMDS 176
S +D ++++W ++S
Sbjct: 170 KIMSCGMDHSLKLWRINS 187
Score = 37.0 bits (84), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 28/113 (24%), Positives = 50/113 (44%), Gaps = 4/113 (3%)
Query: 160 FASASLDGTIQIWNMDSSAAKFTLDAHEKGINCIDYFITSDKVYLITGSDDFTVKVWDYE 219
A A G I+I N + H IN + F D L++ S D +++W+ +
Sbjct: 83 LAVAGSRGIIRIINPITMQCIKHYVGHGNAINELK-FHPRDPNLLLSVSKDHALRLWNIQ 141
Query: 220 TKTCVQI---LEGHTNNVTAVCFHPELRIIITASEDGTILIWNATTFRLQNTL 269
T T V I +EGH + V + + I++ D ++ +W + R+ N +
Sbjct: 142 TDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAI 194
Score = 33.5 bits (75), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 17/66 (25%), Positives = 35/66 (53%), Gaps = 2/66 (3%)
Query: 198 TSDKVYLITGSDDFTVKVWDYETKTCVQILEGHTNNVTAVCFHP-ELRIIITASEDGTIL 256
TS + + GS +++ + T C++ GH N + + FHP + ++++ S+D +
Sbjct: 78 TSHPLLAVAGSRGI-IRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALR 136
Query: 257 IWNATT 262
+WN T
Sbjct: 137 LWNIQT 142
>pdb|3IIW|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H3k27 Peptide
Length = 365
Score = 43.5 bits (101), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/120 (21%), Positives = 60/120 (50%), Gaps = 6/120 (5%)
Query: 112 TFPFVLTASDDKLIKLWDWEKNWECTQTFEGHSHYVMQSAFNPKDLNTFASASLDGTIQI 171
+ P + A +I++ + +C + + GH + + + F+P+D N S S D +++
Sbjct: 83 SHPLLAVAGSRGIIRIIN-PITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRL 141
Query: 172 WNM--DSSAAKF-TLDAHEKGINCIDYFITSDKVYLITGSDDFTVKVWDYETKTCVQILE 228
WN+ D+ A F ++ H + DY + +K+ ++ D ++K+W +K + ++
Sbjct: 142 WNIQTDTLVAIFGGVEGHRDEVLSADYDLLGEKI--MSCGMDHSLKLWRINSKRMMNAIK 199
Score = 40.8 bits (94), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 33/140 (23%), Positives = 57/140 (40%), Gaps = 27/140 (19%)
Query: 42 CIWNYHSQTTEKSVKVTDSPVRTAKFVAREHWIVCGSDDKFIRVFDYNTMASVKEFEAHE 101
C W Y S T+ + V S IR+ + TM +K + H
Sbjct: 74 CAWTYDSNTSHPLLAVAGS-------------------RGIIRIINPITMQCIKHYVGHG 114
Query: 102 DYIRSLAVHPTFP-FVLTASDDKLIKLWDWEKNWECT--QTFEGHSHYVMQSAFNPKDL- 157
+ I L HP P +L+ S D ++LW+ + + EGH V+ + + DL
Sbjct: 115 NAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADY---DLL 171
Query: 158 -NTFASASLDGTIQIWNMDS 176
S +D ++++W ++S
Sbjct: 172 GEKIMSCGMDHSLKLWRINS 191
Score = 37.0 bits (84), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 28/113 (24%), Positives = 50/113 (44%), Gaps = 4/113 (3%)
Query: 160 FASASLDGTIQIWNMDSSAAKFTLDAHEKGINCIDYFITSDKVYLITGSDDFTVKVWDYE 219
A A G I+I N + H IN + F D L++ S D +++W+ +
Sbjct: 87 LAVAGSRGIIRIINPITMQCIKHYVGHGNAINELK-FHPRDPNLLLSVSKDHALRLWNIQ 145
Query: 220 TKTCVQI---LEGHTNNVTAVCFHPELRIIITASEDGTILIWNATTFRLQNTL 269
T T V I +EGH + V + + I++ D ++ +W + R+ N +
Sbjct: 146 TDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAI 198
Score = 33.5 bits (75), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 17/66 (25%), Positives = 35/66 (53%), Gaps = 2/66 (3%)
Query: 198 TSDKVYLITGSDDFTVKVWDYETKTCVQILEGHTNNVTAVCFHP-ELRIIITASEDGTIL 256
TS + + GS +++ + T C++ GH N + + FHP + ++++ S+D +
Sbjct: 82 TSHPLLAVAGSRGI-IRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALR 140
Query: 257 IWNATT 262
+WN T
Sbjct: 141 LWNIQT 146
>pdb|3IIY|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H1k26 Peptide
pdb|3IJ0|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H3k9 Peptide
pdb|3IJ1|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H4k20 Peptide
pdb|3IJC|A Chain A, Crystal Structure Of Eed In Complex With Ndsb-195
Length = 365
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/120 (21%), Positives = 60/120 (50%), Gaps = 6/120 (5%)
Query: 112 TFPFVLTASDDKLIKLWDWEKNWECTQTFEGHSHYVMQSAFNPKDLNTFASASLDGTIQI 171
+ P + A +I++ + +C + + GH + + + F+P+D N S S D +++
Sbjct: 83 SHPLLAVAGSRGIIRIIN-PITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRL 141
Query: 172 WNM--DSSAAKF-TLDAHEKGINCIDYFITSDKVYLITGSDDFTVKVWDYETKTCVQILE 228
WN+ D+ A F ++ H + DY + +K+ ++ D ++K+W +K + ++
Sbjct: 142 WNIQTDTLVAIFGGVEGHRDEVLSADYDLLGEKI--MSCGMDHSLKLWRINSKRMMNAIK 199
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 33/140 (23%), Positives = 57/140 (40%), Gaps = 27/140 (19%)
Query: 42 CIWNYHSQTTEKSVKVTDSPVRTAKFVAREHWIVCGSDDKFIRVFDYNTMASVKEFEAHE 101
C W Y S T+ + V S IR+ + TM +K + H
Sbjct: 74 CAWTYDSNTSHPLLAVAGS-------------------RGIIRIINPITMQCIKHYVGHG 114
Query: 102 DYIRSLAVHPTFP-FVLTASDDKLIKLWDWEKNWECT--QTFEGHSHYVMQSAFNPKDL- 157
+ I L HP P +L+ S D ++LW+ + + EGH V+ + + DL
Sbjct: 115 NAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADY---DLL 171
Query: 158 -NTFASASLDGTIQIWNMDS 176
S +D ++++W ++S
Sbjct: 172 GEKIMSCGMDHSLKLWRINS 191
Score = 37.0 bits (84), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 28/113 (24%), Positives = 50/113 (44%), Gaps = 4/113 (3%)
Query: 160 FASASLDGTIQIWNMDSSAAKFTLDAHEKGINCIDYFITSDKVYLITGSDDFTVKVWDYE 219
A A G I+I N + H IN + F D L++ S D +++W+ +
Sbjct: 87 LAVAGSRGIIRIINPITMQCIKHYVGHGNAINELK-FHPRDPNLLLSVSKDHALRLWNIQ 145
Query: 220 TKTCVQI---LEGHTNNVTAVCFHPELRIIITASEDGTILIWNATTFRLQNTL 269
T T V I +EGH + V + + I++ D ++ +W + R+ N +
Sbjct: 146 TDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAI 198
Score = 33.5 bits (75), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 17/66 (25%), Positives = 35/66 (53%), Gaps = 2/66 (3%)
Query: 198 TSDKVYLITGSDDFTVKVWDYETKTCVQILEGHTNNVTAVCFHP-ELRIIITASEDGTIL 256
TS + + GS +++ + T C++ GH N + + FHP + ++++ S+D +
Sbjct: 82 TSHPLLAVAGSRGI-IRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALR 140
Query: 257 IWNATT 262
+WN T
Sbjct: 141 LWNIQT 146
>pdb|3JZN|A Chain A, Structure Of Eed In Apo Form
pdb|3K26|A Chain A, Complex Structure Of Eed And Trimethylated H3k4
pdb|3K27|A Chain A, Complex Structure Of Eed And Trimethylated H3k9
Length = 366
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/120 (21%), Positives = 60/120 (50%), Gaps = 6/120 (5%)
Query: 112 TFPFVLTASDDKLIKLWDWEKNWECTQTFEGHSHYVMQSAFNPKDLNTFASASLDGTIQI 171
+ P + A +I++ + +C + + GH + + + F+P+D N S S D +++
Sbjct: 84 SHPLLAVAGSRGIIRIIN-PITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRL 142
Query: 172 WNM--DSSAAKF-TLDAHEKGINCIDYFITSDKVYLITGSDDFTVKVWDYETKTCVQILE 228
WN+ D+ A F ++ H + DY + +K+ ++ D ++K+W +K + ++
Sbjct: 143 WNIQTDTLVAIFGGVEGHRDEVLSADYDLLGEKI--MSCGMDHSLKLWRINSKRMMNAIK 200
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 33/140 (23%), Positives = 57/140 (40%), Gaps = 27/140 (19%)
Query: 42 CIWNYHSQTTEKSVKVTDSPVRTAKFVAREHWIVCGSDDKFIRVFDYNTMASVKEFEAHE 101
C W Y S T+ + V S IR+ + TM +K + H
Sbjct: 75 CAWTYDSNTSHPLLAVAGS-------------------RGIIRIINPITMQCIKHYVGHG 115
Query: 102 DYIRSLAVHPTFP-FVLTASDDKLIKLWDWEKNWECT--QTFEGHSHYVMQSAFNPKDL- 157
+ I L HP P +L+ S D ++LW+ + + EGH V+ + + DL
Sbjct: 116 NAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADY---DLL 172
Query: 158 -NTFASASLDGTIQIWNMDS 176
S +D ++++W ++S
Sbjct: 173 GEKIMSCGMDHSLKLWRINS 192
Score = 37.0 bits (84), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 28/113 (24%), Positives = 50/113 (44%), Gaps = 4/113 (3%)
Query: 160 FASASLDGTIQIWNMDSSAAKFTLDAHEKGINCIDYFITSDKVYLITGSDDFTVKVWDYE 219
A A G I+I N + H IN + F D L++ S D +++W+ +
Sbjct: 88 LAVAGSRGIIRIINPITMQCIKHYVGHGNAINELK-FHPRDPNLLLSVSKDHALRLWNIQ 146
Query: 220 TKTCVQI---LEGHTNNVTAVCFHPELRIIITASEDGTILIWNATTFRLQNTL 269
T T V I +EGH + V + + I++ D ++ +W + R+ N +
Sbjct: 147 TDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAI 199
Score = 33.5 bits (75), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 17/66 (25%), Positives = 35/66 (53%), Gaps = 2/66 (3%)
Query: 198 TSDKVYLITGSDDFTVKVWDYETKTCVQILEGHTNNVTAVCFHP-ELRIIITASEDGTIL 256
TS + + GS +++ + T C++ GH N + + FHP + ++++ S+D +
Sbjct: 83 TSHPLLAVAGSRGI-IRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALR 141
Query: 257 IWNATT 262
+WN T
Sbjct: 142 LWNIQT 147
>pdb|4I79|A Chain A, Crystal Structure Of Human Nup43
pdb|4I79|B Chain B, Crystal Structure Of Human Nup43
Length = 399
Score = 42.4 bits (98), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/102 (27%), Positives = 47/102 (46%), Gaps = 7/102 (6%)
Query: 167 GTIQIWNMDSSAAK----FTLDAHEKGINCIDYFITSDKVYLITGSDDFTVKVWDYETKT 222
G ++IW+ + +L ++C+D V + TG D + +WD T
Sbjct: 212 GQLKIWDFRQQGNEPSQILSLTGDRVPLHCVDRHPNQQHV-VATGGQDGMLSIWDVRQGT 270
Query: 223 C-VQILEGHTNNVTAVCFHPE-LRIIITASEDGTILIWNATT 262
V +L+ H + V FHP + T SEDG++ W+A+T
Sbjct: 271 MPVSLLKAHEAEMWEVHFHPSNPEHLFTCSEDGSLWHWDAST 312
Score = 27.7 bits (60), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 14/74 (18%), Positives = 31/74 (41%)
Query: 116 VLTASDDKLIKLWDWEKNWECTQTFEGHSHYVMQSAFNPKDLNTFASASLDGTIQIWNMD 175
V T D ++ +WD + + H + + F+P + + S DG++ W+
Sbjct: 252 VATGGQDGMLSIWDVRQGTMPVSLLKAHEAEMWEVHFHPSNPEHLFTCSEDGSLWHWDAS 311
Query: 176 SSAAKFTLDAHEKG 189
+ + + H+ G
Sbjct: 312 TDVPEKSSLFHQGG 325
>pdb|2PM9|A Chain A, Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT OF THE
Copii Vesicular Coat
Length = 416
Score = 41.6 bits (96), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 44/164 (26%), Positives = 69/164 (42%), Gaps = 27/164 (16%)
Query: 140 FEGHSHYVMQSAFNPKDLNTFASASLDGTIQIWNMD---SSAAKFTLDAHEKGINCIDYF 196
F HS V FN K N AS +G I IW+M+ S + +T + ++ +D
Sbjct: 109 FSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQSMSSVDEV 168
Query: 197 I------TSDKVYLITGSDDFTVKVWDYETKTCVQIL------EGHTNNVTAVCFHPE-- 242
I + V+ GS +F +WD + K V L G ++ V +HP+
Sbjct: 169 ISLAWNQSLAHVFASAGSSNF-ASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNS 227
Query: 243 --LRIIITASEDGTILIWNATTFRLQNTLSSGLERVWSIGYKKG 284
+ + D +ILIW+ R NT L + G++KG
Sbjct: 228 TRVATATGSDNDPSILIWD---LRNANTPLQTLNQ----GHQKG 264
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 42/194 (21%), Positives = 88/194 (45%), Gaps = 26/194 (13%)
Query: 89 NTMASVKEFEAHEDYIRSLAVHPTFPFVL-TASDDKLIKLWDWEKNWECTQTFEGHSHY- 146
N + S+ F H ++++ + VL + ++ I +WD K CT++ ++
Sbjct: 101 NAINSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNK---CTESPSNYTPLT 157
Query: 147 ----------VMQSAFNPKDLNTFASASLDGTIQIWNMDSSAAKFTLD------AHEKGI 190
V+ A+N + FASA IW++ + L ++ +
Sbjct: 158 PGQSMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQL 217
Query: 191 NCIDYFI-TSDKVYLITGSD-DFTVKVWDYE-TKTCVQIL-EGHTNNVTAVCF-HPELRI 245
+ +++ S +V TGSD D ++ +WD T +Q L +GH + ++ + H + +
Sbjct: 218 SVVEWHPKNSTRVATATGSDNDPSILIWDLRNANTPLQTLNQGHQKGILSLDWCHQDEHL 277
Query: 246 IITASEDGTILIWN 259
++++ D T+L+WN
Sbjct: 278 LLSSGRDNTVLLWN 291
Score = 33.9 bits (76), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 47/188 (25%), Positives = 72/188 (38%), Gaps = 22/188 (11%)
Query: 12 EFIQKSDRVKSVDFHPTQPWVLASL-YSGTVCIW----------NYHSQTTEKSVKVTDS 60
F S VK+V F+ Q VLAS +G + IW NY T +S+ D
Sbjct: 108 RFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQSMSSVDE 167
Query: 61 PVRTAKFVAREHWIVCGSDDKFIRVFDYNTMASVKEFE---AHEDYIRSLAV---HP--- 111
+ A + H F ++D V + + L+V HP
Sbjct: 168 VISLAWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNS 227
Query: 112 TFPFVLTASD-DKLIKLWDWEKNWECTQTF-EGHSHYVMQSAFNPKDLNTFASASLDGTI 169
T T SD D I +WD QT +GH ++ + +D + S+ D T+
Sbjct: 228 TRVATATGSDNDPSILIWDLRNANTPLQTLNQGHQKGILSLDWCHQDEHLLLSSGRDNTV 287
Query: 170 QIWNMDSS 177
+WN +S+
Sbjct: 288 LLWNPESA 295
>pdb|3MMY|A Chain A, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|C Chain C, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|E Chain E, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|G Chain G, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
Length = 368
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 40/188 (21%), Positives = 87/188 (46%), Gaps = 14/188 (7%)
Query: 87 DYNTMASVKEFEAHEDYIRSLAVHP-TFP--FVLTASDDKLIKLWDWEKNWEC-TQTFEG 142
++N M ++ + +D I L+ P T P F++ S ++ W+ + + + + +
Sbjct: 25 NHNPMKDIEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQM 84
Query: 143 HSHYVMQSAFNPKDLNTFASASLDGTIQIWNMDSSAAKFTLDAHEKGINCIDYFITSDKV 202
H+ V+ ++ F +AS D T ++W++ S+ A + H+ + I + +
Sbjct: 85 HTGPVLDVCWSDDGSKVF-TASCDKTAKMWDLSSNQA-IQIAQHDAPVKTIHWIKAPNYS 142
Query: 203 YLITGSDDFTVKVWDYETKTCVQILEGHTNNVTAVCFHPELRIIITASEDGTILIWNATT 262
++TGS D T+K WD + + +L+ A +P ++ +E G I+
Sbjct: 143 CVMTGSWDKTLKFWDTRSSNPMMVLQLPERCYCADVIYP--MAVVATAERGLIV------ 194
Query: 263 FRLQNTLS 270
++L+N S
Sbjct: 195 YQLENQPS 202
Score = 29.6 bits (65), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 27/116 (23%), Positives = 53/116 (45%), Gaps = 9/116 (7%)
Query: 150 SAFNPKDLNTFASASLDGTIQIWNMDSSAAKFTLDAHEKGINCIDYFI-TSDKVYLITGS 208
S F + F SA+ D + +++ +++ + I C+ + T +LI GS
Sbjct: 8 SGFGTSGTSMFGSATTDNHNPMKDIEVTSSP------DDSIGCLSFSPPTLPGNFLIAGS 61
Query: 209 DDFTVKVWDYE--TKTCVQILEGHTNNVTAVCFHPELRIIITASEDGTILIWNATT 262
V+ W+ + +T + + HT V VC+ + + TAS D T +W+ ++
Sbjct: 62 WANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFTASCDKTAKMWDLSS 117
Score = 28.9 bits (63), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 44/211 (20%), Positives = 87/211 (41%), Gaps = 22/211 (10%)
Query: 59 DSPVRTAKFVAREHW--IVCGSDDKFIRVFDYNTMASVKEFEAHEDYIRSLAVHPTFPFV 116
D+PV+T ++ ++ ++ GS DK ++ +D + + + E R +P
Sbjct: 127 DAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMVLQLPE---RCYCADVIYPMA 183
Query: 117 LTASDDKLIKLWDWEKNWECTQTFEG---HSHYVMQSAFNPKDLNT-FASASLDGTIQIW 172
+ A+ ++ + ++ E + E H H + + ++ T FA S++G + I
Sbjct: 184 VVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIH 243
Query: 173 NMDS-SAAK--FTLDAHE-KGINCI---DYFITSDKVY------LITGSDDFTVKVWDYE 219
++ + AK FT H G N D + + + L T D WD +
Sbjct: 244 YINPPNPAKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKD 303
Query: 220 TKTCVQILEGHTNNVTAVCFHPELRIIITAS 250
+T ++ E ++A CF+ I AS
Sbjct: 304 ARTKLKTSEQLDQPISACCFNHNGNIFAYAS 334
>pdb|1R5M|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Sif2
Length = 425
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/104 (25%), Positives = 47/104 (45%), Gaps = 11/104 (10%)
Query: 79 DDKF--------IRVFDYNTMASVKEFEAHEDYIRSLAVHPTFPFVLTASDDKLIKLWDW 130
DDKF I V+ + H I L + T +L+ASDD +++W
Sbjct: 217 DDKFVIPGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFNDTNKLLLSASDDGTLRIWH- 275
Query: 131 EKNWECTQTFEGHSHYVMQSAFNPKDLNTFASASLDGTIQIWNM 174
N F GHS ++ +++ D S S+DG++++W++
Sbjct: 276 GGNGNSQNCFYGHSQSIVSASWVGDD--KVISCSMDGSVRLWSL 317
Score = 36.2 bits (82), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 36/165 (21%), Positives = 68/165 (41%), Gaps = 17/165 (10%)
Query: 116 VLTASDDKLIKLWDWEKNWECTQTFEGHSHYVMQSAFNPKDLNTFASASLDGTIQIWNMD 175
++T ++ ++LW+ K H ++ +N KD S ++ +WN+
Sbjct: 123 IVTGVENGELRLWN--KTGALLNVLNFHRAPIVSVKWN-KDGTHIISMDVENVTILWNVI 179
Query: 176 SSAAKFTLDAHEKG---INC----------IDYFITSDKVYLITGSDDFTVKVWDYETKT 222
S + E G IN +D D ++I G + V+ KT
Sbjct: 180 SGTVMQHFELKETGGSSINAENHSGDGSLGVDVEWVDDDKFVIPGPKG-AIFVYQITEKT 238
Query: 223 CVQILEGHTNNVTAVCFHPELRIIITASEDGTILIWNATTFRLQN 267
L GH ++ + F+ +++++AS+DGT+ IW+ QN
Sbjct: 239 PTGKLIGHHGPISVLEFNDTNKLLLSASDDGTLRIWHGGNGNSQN 283
Score = 33.5 bits (75), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 25/114 (21%), Positives = 52/114 (45%), Gaps = 7/114 (6%)
Query: 156 DLNTFASASLDGTIQIWNMDSSAAKFTLDAHEKGINCIDYFITSDKVYLITGSDDFTVKV 215
D + F G I ++ + L H I+ +++ T+ L++ SDD T+++
Sbjct: 216 DDDKFVIPGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFNDTNK--LLLSASDDGTLRI 273
Query: 216 WDYETKTCVQILEGHTNNVTAVCFHPELRIIITASEDGTILIWNATTFRLQNTL 269
W GH+ ++ + + + + +I+ S DG++ +W+ QNTL
Sbjct: 274 WHGGNGNSQNCFYGHSQSIVSASWVGDDK-VISCSMDGSVRLWSLK----QNTL 322
>pdb|3ZWL|B Chain B, Structure Of Eukaryotic Translation Initiation Factor
Eif3i Complex With Eif3b C-Terminus (655-700)
pdb|3ZWL|D Chain D, Structure Of Eukaryotic Translation Initiation Factor
Eif3i Complex With Eif3b C-Terminus (655-700)
Length = 369
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 39/83 (46%), Gaps = 3/83 (3%)
Query: 142 GHSHYVMQSAFNPKDLNTFASASLDGTIQIWNMDSSAAKFTLDAHEKGINCIDYFITSDK 201
GH + Q +N K+ + S S D + +W + TLD H I ID +
Sbjct: 30 GHERPLTQVKYN-KEGDLLFSCSKDSSASVWYSLNGERLGTLDGHTGTIWSID--VDCFT 86
Query: 202 VYLITGSDDFTVKVWDYETKTCV 224
Y +TGS D+++K+WD CV
Sbjct: 87 KYCVTGSADYSIKLWDVSNGQCV 109
Score = 35.8 bits (81), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 55/243 (22%), Positives = 100/243 (41%), Gaps = 30/243 (12%)
Query: 46 YHSQTTEKSVKVT--DSPVRTAKFVAREHWIVCGSDDKFIRVFDYNTMASVKEFEAHEDY 103
Y + K++K+T + P+ K+ + S D V+ + + H
Sbjct: 17 YFQGSHMKAIKLTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLGTLDGHTGT 76
Query: 104 IRSLAVHPTFPFVLTASDDKLIKLWDWEKNWECTQTFEGHSHYVMQSAFNPKDLNTFASA 163
I S+ V + +T S D IKLWD N +C T++ V + F+P + A
Sbjct: 77 IWSIDVDCFTKYCVTGSADYSIKLWDV-SNGQCVATWKSPVP-VKRVEFSP--CGNYFLA 132
Query: 164 SLD------GTIQIWNMDSSAAKFTL-DAHEKGINCIDYFITSDKV-------------Y 203
LD G+I I+ ++ +A L E+ I+ I IT + + Y
Sbjct: 133 ILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKI---ITHEGLDAATVAGWSTKGKY 189
Query: 204 LITGSDDFTVKVWDYETK-TCVQILEGHTNNVTAVCFHPELRIIITASEDGTILIWNATT 262
+I G D + +D V ++ H +++ + F P+L IT+S D + + +T
Sbjct: 190 IIAGHKDGKISKYDVSNNYEYVDSIDLHEKSISDMQFSPDLTYFITSSRDTNSFLVDVST 249
Query: 263 FRL 265
++
Sbjct: 250 LQV 252
Score = 28.5 bits (62), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 14/53 (26%), Positives = 25/53 (47%)
Query: 227 LEGHTNNVTAVCFHPELRIIITASEDGTILIWNATTFRLQNTLSSGLERVWSI 279
L GH +T V ++ E ++ + S+D + +W + TL +WSI
Sbjct: 28 LTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLGTLDGHTGTIWSI 80
>pdb|3I2N|A Chain A, Crystal Structure Of Wd40 Repeats Protein Wdr92
Length = 357
Score = 37.7 bits (86), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 41/165 (24%), Positives = 70/165 (42%), Gaps = 32/165 (19%)
Query: 157 LNTFASASLDGTIQIWNMDSSAAKFTLDAHE-KGINCIDYFITS-DKVYLITGSDDFTVK 214
+ FA + G IQ++ + K + + K I C + TS + YL TG +
Sbjct: 36 MGNFARGT--GVIQLYEIQHGDLKLLREIEKAKPIKCGTFGATSLQQRYLATGDFGGNLH 93
Query: 215 VWDYET-KTCVQILEGHTNNVTAVCFH---------PELRIIITASEDGTILIWNATTFR 264
+W+ E + V ++GH + A+ PE I+T S DGT+ +W+ R
Sbjct: 94 IWNLEAPEMPVYSVKGHKEIINAIDGIGGLGIGEGAPE---IVTGSRDGTVKVWDP---R 147
Query: 265 LQNTLSSGLERV--------WSIGYKKGSNQ----VAFGCDNGTL 297
++ + +E V W++ + NQ V G DNG +
Sbjct: 148 QKDDPVANMEPVQGENKRDCWTVAFGNAYNQEERVVCAGYDNGDI 192
Score = 35.0 bits (79), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 27/121 (22%), Positives = 53/121 (43%), Gaps = 14/121 (11%)
Query: 160 FASASLDGTIQIWNMDSSAAK-FTLDAHEKGINCIDYFITSDKVY----LITGSDDFTVK 214
A+ G + IWN+++ +++ H++ IN ID ++TGS D TVK
Sbjct: 83 LATGDFGGNLHIWNLEAPEMPVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVK 142
Query: 215 VWDYETK----TCVQILEGHTNN-----VTAVCFHPELRIIITASEDGTILIWNATTFRL 265
VWD K ++ ++G ++ E R++ ++G I +++ L
Sbjct: 143 VWDPRQKDDPVANMEPVQGENKRDCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRNMAL 202
Query: 266 Q 266
+
Sbjct: 203 R 203
>pdb|4A08|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 13 Bp Cpd-Duplex (
Purine At D-1 Position) At 3.0 A Resolution (Cpd 1)
pdb|4A09|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 15 Bp Cpd-Duplex
(Purine At D-1 Position) At 3.1 A Resolution (Cpd 2)
pdb|4A0A|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 16 Bp Cpd-Duplex (
Pyrimidine At D-1 Position) At 3.6 A Resolution (Cpd 3)
pdb|4A0B|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 16 Bp Cpd-Duplex (
Pyrimidine At D-1 Position) At 3.8 A Resolution (Cpd 4)
pdb|4A0B|D Chain D, Structure Of Hsddb1-Drddb2 Bound To A 16 Bp Cpd-Duplex (
Pyrimidine At D-1 Position) At 3.8 A Resolution (Cpd 4)
pdb|4A0K|D Chain D, Structure Of Ddb1-Ddb2-Cul4a-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
pdb|4A0L|B Chain B, Structure Of Ddb1-Ddb2-Cul4b-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
pdb|4A0L|D Chain D, Structure Of Ddb1-Ddb2-Cul4b-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
Length = 382
Score = 37.0 bits (84), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 36/141 (25%), Positives = 68/141 (48%), Gaps = 11/141 (7%)
Query: 143 HSHYVMQSAFNPKDLNTFASASLDGTIQIWNMDSSAAKFTLDA---HEKGINCIDYFITS 199
H V + FNP+ A++S+D T+++W++ + K + A HEK +N YF +
Sbjct: 202 HKAKVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKDKNSYIAEMPHEKPVNAA-YFNPT 260
Query: 200 DKVYLITGSDDFTVKVW-DYE-TKTCVQILEGHT--NNVTAV--CFHPELRIIITAS-ED 252
D L+T ++V+ Y+ +K I+ H ++T + +HP +I+ D
Sbjct: 261 DSTKLLTTDQRNEIRVYSSYDWSKPDQIIIHPHRQFQHLTPIKATWHPMYDLIVAGRYPD 320
Query: 253 GTILIWNATTFRLQNTLSSGL 273
+L+ + T + + S GL
Sbjct: 321 DQLLLNDKRTIDIYDANSGGL 341
>pdb|3EI1|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 14 Bp 6-4
Photoproduct Containing Dna-Duplex
pdb|3EI2|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 16 Bp Abasic Site
Containing Dna-Duplex
pdb|3EI3|B Chain B, Structure Of The Hsddb1-Drddb2 Complex
Length = 383
Score = 37.0 bits (84), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 36/141 (25%), Positives = 68/141 (48%), Gaps = 11/141 (7%)
Query: 143 HSHYVMQSAFNPKDLNTFASASLDGTIQIWNMDSSAAKFTLDA---HEKGINCIDYFITS 199
H V + FNP+ A++S+D T+++W++ + K + A HEK +N YF +
Sbjct: 203 HKAKVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKDKNSYIAEMPHEKPVNAA-YFNPT 261
Query: 200 DKVYLITGSDDFTVKVW-DYE-TKTCVQILEGHT--NNVTAV--CFHPELRIIITAS-ED 252
D L+T ++V+ Y+ +K I+ H ++T + +HP +I+ D
Sbjct: 262 DSTKLLTTDQRNEIRVYSSYDWSKPDQIIIHPHRQFQHLTPIKATWHPMYDLIVAGRYPD 321
Query: 253 GTILIWNATTFRLQNTLSSGL 273
+L+ + T + + S GL
Sbjct: 322 DQLLLNDKRTIDIYDANSGGL 342
>pdb|3DW8|B Chain B, Structure Of A Protein Phosphatase 2a Holoenzyme With B55
Subunit
pdb|3DW8|E Chain E, Structure Of A Protein Phosphatase 2a Holoenzyme With B55
Subunit
Length = 447
Score = 34.7 bits (78), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 48/195 (24%), Positives = 77/195 (39%), Gaps = 35/195 (17%)
Query: 87 DYNTMASVKEFEAHEDYIRSLAVHPTFPFV-----------LTASDDKLIKLW---DWEK 132
+YN ++ + E DY++SL + + L +++DK IKLW + +K
Sbjct: 70 EYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQKNAAQFLLSTNDKTIKLWKISERDK 129
Query: 133 NWECTQTFEGHSHYVMQSAFNPKDLNTFASASLDGTIQIWNMDSSAAKFTLDAHEKGINC 192
E E Y + + F L +++S + +AH IN
Sbjct: 130 RPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDL-------MVEASPRRIFANAHTYHINS 182
Query: 193 IDYFITSD-KVYLITGSDDFTVKVWDYE-TKTCVQI-------LEGHTNNVTAVCFHPE- 242
I I SD + YL +DD + +W E T I +E T +TA FHP
Sbjct: 183 IS--INSDYETYL--SADDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNS 238
Query: 243 LRIIITASEDGTILI 257
+ +S GTI +
Sbjct: 239 CNTFVYSSSKGTIRL 253
Score = 34.7 bits (78), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 44/87 (50%), Gaps = 8/87 (9%)
Query: 99 AHEDYIRSLAVHPTFPFVLTASDDKLIKLWDWE---KNWECTQ----TFEGHSHYVMQSA 151
AH +I S++++ + L+A DD I LW E +++ E + + +
Sbjct: 175 AHTYHINSISINSDYETYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAE 233
Query: 152 FNPKDLNTFASASLDGTIQIWNMDSSA 178
F+P NTF +S GTI++ +M +SA
Sbjct: 234 FHPNSCNTFVYSSSKGTIRLCDMRASA 260
>pdb|1S4U|X Chain X, Crystal Structure Analysis Of The Beta-Propeller Protein
Ski8p
Length = 407
Score = 33.5 bits (75), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 41/193 (21%), Positives = 76/193 (39%), Gaps = 39/193 (20%)
Query: 32 VLASLYSGTVCIWNYHSQTTEKSV------------KVTDSPVRTAKF-----VAREHWI 74
++A+ GT IW +H E + +SP+ ++F ++ I
Sbjct: 151 LVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERGLI 210
Query: 75 VCGSDDKFIRVFDYNTMASVKEFEAHE------DYIRSLAVHPTFPFVLTASDDK---LI 125
G ++ +++ + +T+ + FE+ + IRS+ P + A D I
Sbjct: 211 ATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCI 270
Query: 126 KLWDWEKNWE---------CTQTFEG---HSHYVMQSAFNPKDLNTFASASLDGTIQIWN 173
L++ E +Q G HS +VM +FN T SA DG ++ W+
Sbjct: 271 TLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSG-ETLCSAGWDGKLRFWD 329
Query: 174 MDSSAAKFTLDAH 186
+ + TL+ H
Sbjct: 330 VKTKERITTLNMH 342
>pdb|1SQ9|A Chain A, Structure Of Ski8p, A Wd Repeat Protein Involved In Mrna
Degradation And Meiotic Recombination
Length = 397
Score = 33.1 bits (74), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 41/193 (21%), Positives = 76/193 (39%), Gaps = 39/193 (20%)
Query: 32 VLASLYSGTVCIWNYHSQTTEKSV------------KVTDSPVRTAKF-----VAREHWI 74
++A+ GT IW +H E + +SP+ ++F ++ I
Sbjct: 141 LVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERGLI 200
Query: 75 VCGSDDKFIRVFDYNTMASVKEFEAHE------DYIRSLAVHPTFPFVLTASDDK---LI 125
G ++ +++ + +T+ + FE+ + IRS+ P + A D I
Sbjct: 201 ATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCI 260
Query: 126 KLWDWEKNWE---------CTQTFEG---HSHYVMQSAFNPKDLNTFASASLDGTIQIWN 173
L++ E +Q G HS +VM +FN T SA DG ++ W+
Sbjct: 261 TLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSG-ETLCSAGWDGKLRFWD 319
Query: 174 MDSSAAKFTLDAH 186
+ + TL+ H
Sbjct: 320 VKTKERITTLNMH 332
>pdb|3EWE|A Chain A, Crystal Structure Of The Nup85SEH1 COMPLEX
pdb|3EWE|C Chain C, Crystal Structure Of The Nup85SEH1 COMPLEX
Length = 349
Score = 33.1 bits (74), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 39/81 (48%), Gaps = 4/81 (4%)
Query: 99 AHEDYIRSLAVHPTFPFVLTASDDKLIKLWDWEK---NWECTQTFEGH-SHYVMQSAFNP 154
H+D + + V T S D+ IK++ +K NWE + ++ H S V +P
Sbjct: 7 GHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASP 66
Query: 155 KDLNTFASASLDGTIQIWNMD 175
+ ASAS D T+++W D
Sbjct: 67 EYGRIIASASYDKTVKLWEED 87
>pdb|3F3P|A Chain A, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|B Chain B, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|E Chain E, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|F Chain F, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|I Chain I, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|J Chain J, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
Length = 351
Score = 33.1 bits (74), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 39/81 (48%), Gaps = 4/81 (4%)
Query: 99 AHEDYIRSLAVHPTFPFVLTASDDKLIKLWDWEK---NWECTQTFEGH-SHYVMQSAFNP 154
H+D + + V T S D+ IK++ +K NWE + ++ H S V +P
Sbjct: 9 GHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASP 68
Query: 155 KDLNTFASASLDGTIQIWNMD 175
+ ASAS D T+++W D
Sbjct: 69 EYGRIIASASYDKTVKLWEED 89
>pdb|3F3F|A Chain A, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21
pdb|3F3F|B Chain B, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21
pdb|3F3F|E Chain E, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21
pdb|3F3F|F Chain F, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21
pdb|3F3G|A Chain A, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P212121
pdb|3F3G|B Chain B, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P212121
pdb|3F3G|E Chain E, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P212121
pdb|3F3G|F Chain F, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P212121
Length = 351
Score = 32.7 bits (73), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 39/81 (48%), Gaps = 4/81 (4%)
Query: 99 AHEDYIRSLAVHPTFPFVLTASDDKLIKLWDWEK---NWECTQTFEGH-SHYVMQSAFNP 154
H+D + + V T S D+ IK++ +K NWE + ++ H S V +P
Sbjct: 9 GHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASP 68
Query: 155 KDLNTFASASLDGTIQIWNMD 175
+ ASAS D T+++W D
Sbjct: 69 EYGRIIASASYDKTVKLWEED 89
>pdb|1BUE|A Chain A, Nmc-A Carbapenemase From Enterobacter Cloacae
pdb|1BUL|A Chain A, 6alpha-(Hydroxypropyl)penicillanate Acylated On Nmc-A
Beta- Lactamase From Enterobacter Cloacae
Length = 265
Score = 27.7 bits (60), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 38/166 (22%), Positives = 64/166 (38%), Gaps = 16/166 (9%)
Query: 137 TQTFEGHSHYVMQSAFNPKDLNTFASASLDGTIQIWNMDSSAAKFTLDAHEKGINCIDYF 196
T++ E HS + N L A+A+L + D+ A L+ + G + F
Sbjct: 73 TRSLEFHSPITTKYKDNGMSLGDMAAAALQYS------DNGATNIILERYIGGPEGMTKF 126
Query: 197 ITSDKVYLITGSDDFTVKVWDYETKTCVQILEGHTNNVTAVCFHPE---LRIIITASEDG 253
+ S G +DF + W+ + T + E T+ AV + L I++ E
Sbjct: 127 MRS------IGDEDFRLDRWELDLNTAIPGDERDTSTPAAVAKSLKTLALGNILSEHEKE 180
Query: 254 TILIWNATTFRLQNTLSSGLERVWSIGYKKGSNQVAFGCDNGTLIV 299
T W + + + W +G K GS A+G N +V
Sbjct: 181 TYQTWLKGNTTGAARIRASVPSDWVVGDKTGSCG-AYGTANDYAVV 225
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.133 0.418
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,756,003
Number of Sequences: 62578
Number of extensions: 388266
Number of successful extensions: 2282
Number of sequences better than 100.0: 109
Number of HSP's better than 100.0 without gapping: 83
Number of HSP's successfully gapped in prelim test: 26
Number of HSP's that attempted gapping in prelim test: 1004
Number of HSP's gapped (non-prelim): 423
length of query: 312
length of database: 14,973,337
effective HSP length: 99
effective length of query: 213
effective length of database: 8,778,115
effective search space: 1869738495
effective search space used: 1869738495
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (24.3 bits)